BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (569 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P16431 Formate hydrogenlyase subunit 5 n=104 Tax=Bacter... 1185 0.0 UniRef50_P77329 Hydrogenase-4 component G n=130 Tax=Bacteria Rep... 858 0.0 UniRef50_A1RWL3 NADH dehydrogenase (Ubiquinone), 30 kDa subunit ... 573 e-162 UniRef50_B6YTW8 Hydrogenase 4, component G or formate hydrogen l... 477 e-133 UniRef50_B6YWP8 Hydrogenase 4, subunit 5 n=1 Tax=Thermococcus on... 461 e-128 UniRef50_C5A3D4 Formate hydrogenlyase I subunit F (Mhy1F) n=2 Ta... 455 e-126 UniRef50_B7R5K6 Hydrogenase-4 component G n=1 Tax=Thermococcus s... 449 e-124 UniRef50_A3DNE9 NADH dehydrogenase (Ubiquinone), 30 kDa subunit ... 433 e-119 UniRef50_Q2RXM4 NADH-ubiquinone oxidoreductase n=1 Tax=Rhodospir... 420 e-116 UniRef50_B5YKR2 Hydrogenase-4 component G n=1 Tax=Thermodesulfov... 414 e-114 UniRef50_A1ASR5 NADH dehydrogenase (Ubiquinone), 30 kDa subunit ... 394 e-108 UniRef50_Q1PZL4 Similar to membrane-bound [NiFe]-hydrogenase-3, ... 367 e-100 UniRef50_C8W240 Hydrogenase, large subunit-like protein n=1 Tax=... 343 1e-92 UniRef50_Q0W2B9 Hydrogenase, large subunit-like protein (HycE-li... 337 8e-91 UniRef50_A1RZ40 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 ... 285 3e-75 UniRef50_B1ZSF2 NADH dehydrogenase (Quinone) n=1 Tax=Opitutus te... 284 5e-75 UniRef50_Q24ST8 Formate hydrogenlyase subunit 5 n=2 Tax=Desulfit... 284 7e-75 UniRef50_B8I2P5 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 275 5e-72 UniRef50_A1AUU6 Ech hydrogenase subunit E n=3 Tax=Bacteria RepID... 271 7e-71 UniRef50_Q0W6T4 [NiFe]-hydrogenase, large subunit (EchE-like) n=... 259 2e-67 UniRef50_A5GBN1 Ech hydrogenase subunit E n=20 Tax=cellular orga... 252 3e-65 UniRef50_C7NUN7 NADH dehydrogenase (Quinone) n=1 Tax=Halorhabdus... 250 1e-64 UniRef50_C6A407 Membrane-bound hydrogenase MBH 1, subunit Mbh1L ... 249 3e-64 UniRef50_Q2FTW4 Membrane bound hydrogenase subunit mbhL n=3 Tax=... 243 1e-62 UniRef50_C1TPP0 Ni,Fe-hydrogenase III large subunit n=2 Tax=Syne... 243 2e-62 UniRef50_B2V8R2 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 242 2e-62 UniRef50_P31895 Carbon monoxide-induced hydrogenase n=14 Tax=Bac... 242 3e-62 UniRef50_A7I7D0 NADH dehydrogenase (Ubiquinone), 30 kDa subunit ... 241 4e-62 UniRef50_B5IS38 Respiratory-chain NADH dehydrogenase, 49 Kd subu... 241 7e-62 UniRef50_C6A3Z3 Membrane-bound hydrogenase MBH 2, subunit Mbh2L ... 239 2e-61 UniRef50_B6YU98 Membrane bound hydrogenase, NiFe-hydrogenase lar... 238 3e-61 UniRef50_Q0W3I1 Ech hydrogenase, subunit E n=2 Tax=Euryarchaeota... 237 1e-60 UniRef50_D1Z1Z0 Putative [NiFe]-hydrogenase large subunit n=1 Ta... 232 2e-59 UniRef50_Q8U0Z6 Mbh12 membrane bound hydrogenase alpha (NADH deh... 231 4e-59 UniRef50_B3VS74 NADH-ubiquinone oxidoreductase chain 49kDa n=4 T... 230 1e-58 UniRef50_C5CEV3 NADH-ubiquinone oxidoreductase chain 49kDa n=1 T... 230 1e-58 UniRef50_B5Y915 EchE n=1 Tax=Coprothermobacter proteolyticus DSM... 228 3e-58 UniRef50_Q609T9 Hydrogenase subunit n=1 Tax=Methylococcus capsul... 226 1e-57 UniRef50_A3DKH4 NADH-ubiquinone oxidoreductase, chain 49kDa n=2 ... 226 2e-57 UniRef50_B9L8U2 Ech Hydrogenase, Subunit n=3 Tax=Epsilonproteoba... 221 5e-56 UniRef50_D2LAG1 NADH-ubiquinone oxidoreductase chain 49kDa n=1 T... 220 1e-55 UniRef50_Q0F384 Hydrogenase subunit n=1 Tax=Mariprofundus ferroo... 212 3e-53 UniRef50_C7N626 Ech hydrogenase subunit E n=25 Tax=cellular orga... 208 5e-52 UniRef50_D1YVS8 Ech hydrogenase subunit E n=1 Tax=Methanocella p... 207 7e-52 UniRef50_Q3ZW31 Hydrogenase, group 4, HycE subunit n=3 Tax=Dehal... 201 6e-50 UniRef50_B2HHH7 Formate hydrogenase HycE n=3 Tax=Actinomycetales... 199 2e-49 UniRef50_A6DAC0 Carbon monoxide-induced hydrogenase, large subun... 199 3e-49 UniRef50_D2LH96 NADH-ubiquinone oxidoreductase chain 49kDa n=1 T... 197 7e-49 UniRef50_Q5LH50 NADH-quinone oxidoreductase subunit C/D n=34 Tax... 195 4e-48 UniRef50_Q58433 Uncharacterized protein MJ1027 n=12 Tax=Methanoc... 192 2e-47 UniRef50_B6AS24 Putative NADH-ubiquinone oxidoreductase, 49 kDa ... 192 4e-47 UniRef50_Q2WAW4 Ni,Fe-hydrogenase III large subunit n=11 Tax=Alp... 191 7e-47 UniRef50_C8XAS3 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 191 1e-46 UniRef50_Q3A825 NADH-quinone oxidoreductase subunit B/C/D n=103 ... 190 1e-46 UniRef50_B3DZF5 Formate hydrogenlyase subunit 5 n=8 Tax=Bacteria... 190 2e-46 UniRef50_D2MJM9 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 ... 189 2e-46 UniRef50_Q5P2H0 Subunit of formate hydrogenlyase-like membrane c... 189 2e-46 UniRef50_A0B812 F420H2 dehydrogenase subunit C n=6 Tax=Archaea R... 187 1e-45 UniRef50_C6PUG2 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 184 7e-45 UniRef50_UPI0001C42022 energy-converting hydrogenase B subunit N... 183 2e-44 UniRef50_C6NX38 Ni,Fe-hydrogenase III large subunit n=1 Tax=Acid... 181 9e-44 UniRef50_C9LCY9 NADH dehydrogenase I, C/D subunit n=9 Tax=Bacter... 179 2e-43 UniRef50_Q2C5T4 NADH dehydrogenase I, B/C/D subunits n=2 Tax=Pho... 179 4e-43 UniRef50_B8J7E4 NADH-ubiquinone oxidoreductase chain 49kDa n=14 ... 177 9e-43 UniRef50_D0L1P0 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 177 1e-42 UniRef50_D2U4G0 NADH-quinone oxidoreductase chain C/D n=1 Tax=Ar... 177 1e-42 UniRef50_A1KEQ8 Possible formate hydrogenase hycQ (FHL) n=14 Tax... 175 5e-42 UniRef50_Q57935 Uncharacterized protein MJ0515 n=17 Tax=Euryarch... 175 5e-42 UniRef50_Q2NED9 EhbN n=5 Tax=Methanobacteriaceae RepID=Q2NED9_METST 173 1e-41 UniRef50_Q2YAA3 NADH-quinone oxidoreductase subunit C/D n=259 Ta... 173 2e-41 UniRef50_Q3JMD7 Hydrogenase subunit n=33 Tax=Burkholderia RepID=... 171 8e-41 UniRef50_C6HVM5 Putative hydrogenase-3 subunit (HycE) n=1 Tax=Le... 169 3e-40 UniRef50_C7I0C0 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 169 4e-40 UniRef50_Q6MDR3 NADH-quinone oxidoreductase subunit D n=2 Tax=Pa... 168 7e-40 UniRef50_D2RET0 NADH-quinone oxidoreductase, B subunit n=1 Tax=A... 167 7e-40 UniRef50_C0QBF7 HyfG n=3 Tax=Bacteria RepID=C0QBF7_DESAH 167 8e-40 UniRef50_D2R5G7 NADH dehydrogenase (Quinone) n=2 Tax=Planctomyce... 167 8e-40 UniRef50_A1RZ50 NADH dehydrogenase (Ubiquinone) n=6 Tax=Archaea ... 166 2e-39 UniRef50_D2PDB9 NADH dehydrogenase (Ubiquinone) n=10 Tax=Sulfolo... 165 4e-39 UniRef50_B9L172 NADH dehydrogenase I, D subunit n=1 Tax=Thermomi... 165 5e-39 UniRef50_D2L9H0 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 165 5e-39 UniRef50_C6NSM4 NADH dehydrogenase I, B/C/D subunits n=1 Tax=Aci... 162 3e-38 UniRef50_A8VSQ7 Diguanylate cyclase/phosphodiesterase with PAS/P... 161 6e-38 UniRef50_C1XWY7 Ni,Fe-hydrogenase III large subunit n=1 Tax=Meio... 161 8e-38 UniRef50_Q8TY43 Ni,Fe-hydrogenase III large subunit n=1 Tax=Meth... 160 9e-38 UniRef50_C7DI97 NADH dehydrogenase (Quinone) n=1 Tax=Candidatus ... 160 1e-37 UniRef50_Q6MIR5 NADH-quinone oxidoreductase subunit C/D n=1 Tax=... 158 4e-37 UniRef50_Q6APF2 Related to hydrogenase, component E-formate hydr... 158 6e-37 UniRef50_C0Z770 NADH-quinone oxidoreductase chain D n=2 Tax=Baci... 158 7e-37 UniRef50_A8A9X2 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 ... 157 1e-36 UniRef50_B1YB08 NADH dehydrogenase (Quinone) n=5 Tax=Thermoprote... 157 1e-36 UniRef50_B0R3U3 NADH dehydrogenase-like complex subunit CD n=16 ... 157 2e-36 UniRef50_C7LSU9 NADH-ubiquinone oxidoreductase chain 49kDa n=1 T... 156 2e-36 UniRef50_C1D0H4 Putative NADH dehydrogenase (Quinone), subunit D... 156 3e-36 UniRef50_C1XJB2 NADH dehydrogenase subunit D n=1 Tax=Meiothermus... 155 4e-36 UniRef50_D1C6X3 NADH dehydrogenase I, D subunit n=1 Tax=Sphaerob... 155 4e-36 UniRef50_Q1AVI6 NADH-quinone oxidoreductase subunit D n=1 Tax=Ru... 155 5e-36 UniRef50_A3CUR5 NADH dehydrogenase (Ubiquinone) n=3 Tax=Methanom... 154 7e-36 UniRef50_Q2K3U2 NADH-quinone oxidoreductase subunit D 2 n=7 Tax=... 154 9e-36 UniRef50_Q2S5J0 NADH-quinone oxidoreductase subunit D n=5 Tax=Ba... 153 2e-35 UniRef50_A4XCQ7 NADH-quinone oxidoreductase subunit D 2 n=22 Tax... 153 2e-35 UniRef50_UPI00016C492D NADH dehydrogenase subunit D n=1 Tax=Gemm... 152 2e-35 UniRef50_B9L625 NADH-ubiquinone oxidoreductase n=3 Tax=Epsilonpr... 152 4e-35 UniRef50_Q7NI12 NAD(P)H-quinone oxidoreductase subunit H 1 n=3 T... 150 1e-34 UniRef50_B3E6C1 NADH-ubiquinone oxidoreductase chain 49kDa n=2 T... 150 2e-34 UniRef50_Q1IS59 NADH-quinone oxidoreductase subunit D 1 n=2 Tax=... 150 2e-34 UniRef50_A6Q6W4 Ni-Fe hydrogenase, large subunit HycE n=3 Tax=Ep... 149 2e-34 UniRef50_B5YKI5 NADH-quinone oxidoreductase subunit D 1 n=12 Tax... 147 1e-33 UniRef50_Q64DY8 F420H2-quinone oxidoreductase 45 kD subunit n=8 ... 146 2e-33 UniRef50_A0LSU1 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 ... 146 2e-33 UniRef50_A5UXK3 NADH-quinone oxidoreductase subunit D 1 n=20 Tax... 145 3e-33 UniRef50_B1ZUJ2 NADH-quinone oxidoreductase subunit D 2 n=5 Tax=... 145 4e-33 UniRef50_Q979M3 NADH dehydrogenase I chain D n=6 Tax=Thermoplasm... 145 5e-33 UniRef50_B1W516 NADH-quinone oxidoreductase subunit D 1 n=24 Tax... 144 1e-32 UniRef50_B1VSH7 NADH-quinone oxidoreductase subunit D 2 n=6 Tax=... 144 1e-32 UniRef50_B8IYV5 NAD-dependent dehydrogenase subunit n=1 Tax=Desu... 142 2e-32 UniRef50_P56753 NAD(P)H-quinone oxidoreductase subunit H, chloro... 142 4e-32 UniRef50_Q2JFL7 NADH-quinone oxidoreductase subunit D n=81 Tax=B... 142 4e-32 UniRef50_A5FW46 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 ... 140 9e-32 UniRef50_B3TC54 Putative Respiratory-chain NADH dehydrogenase, 4... 140 1e-31 UniRef50_Q2RJU4 NADH-quinone oxidoreductase subunit D n=94 Tax=F... 140 1e-31 UniRef50_A5FKI7 NADH-quinone oxidoreductase subunit D n=17 Tax=B... 140 1e-31 UniRef50_C2BU22 NADH dehydrogenase (Quinone) n=4 Tax=cellular or... 139 2e-31 UniRef50_UPI00019012E4 NADH dehydrogenase subunit D n=1 Tax=Myco... 139 2e-31 UniRef50_A9B4Z7 NADH-quinone oxidoreductase subunit D 1 n=9 Tax=... 139 3e-31 UniRef50_A5UWP3 NADH-ubiquinone oxidoreductase, chain 49kDa n=2 ... 138 6e-31 UniRef50_B1ZRT0 NADH-quinone oxidoreductase subunit D 1 n=16 Tax... 138 6e-31 UniRef50_Q21TB4 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 ... 138 7e-31 UniRef50_B4SJH6 NADH-quinone oxidoreductase subunit D 1 n=211 Ta... 137 7e-31 UniRef50_A3DM94 Membrane bound protein complex subunit mbxL n=2 ... 135 3e-30 UniRef50_B5YL34 NADH-quinone oxidoreductase subunit D 2 n=1 Tax=... 135 4e-30 UniRef50_Q67P19 NADH-quinone oxidoreductase subunit D 1 n=1 Tax=... 135 5e-30 UniRef50_A8MBT0 NADH dehydrogenase (Quinone) n=1 Tax=Caldivirga ... 135 5e-30 UniRef50_Q30PI1 NADH-quinone oxidoreductase subunit D n=45 Tax=E... 134 8e-30 UniRef50_C9LVK3 Proton-translocating NADH-quinone oxidoreductase... 134 1e-29 UniRef50_A9B5Q0 NADH-ubiquinone oxidoreductase chain 49kDa n=1 T... 134 1e-29 UniRef50_B8DS05 NADH dehydrogenase (Quinone) n=7 Tax=Deltaproteo... 133 2e-29 UniRef50_B2V8J2 NADH-quinone oxidoreductase subunit C/D n=15 Tax... 132 3e-29 UniRef50_A0RMD1 NADH-quinone oxidoreductase subunit C/D n=5 Tax=... 131 7e-29 UniRef50_A7C1S4 NADH-ubiquinone oxidoreductase subunit n=3 Tax=c... 131 9e-29 UniRef50_C9RKY1 NADH dehydrogenase (Quinone) n=1 Tax=Fibrobacter... 129 4e-28 UniRef50_A1ALP2 NADH-quinone oxidoreductase subunit D n=1 Tax=Pe... 128 5e-28 UniRef50_A9FF67 NAD-dependent dehydrogenase subunit n=1 Tax=Sora... 128 5e-28 UniRef50_A6LMC4 NADH-quinone oxidoreductase subunit D n=14 Tax=c... 127 8e-28 UniRef50_Q4P4N9 Putative uncharacterized protein n=1 Tax=Ustilag... 127 1e-27 UniRef50_A0L9R4 Membrane bound protein complex subunit mbxL n=1 ... 126 2e-27 UniRef50_A4WMP9 NADH dehydrogenase (Ubiquinone) n=5 Tax=Thermopr... 125 4e-27 UniRef50_D2R4P3 NADH dehydrogenase (Quinone) n=3 Tax=Planctomyce... 125 5e-27 UniRef50_UPI0001C31275 NADH dehydrogenase I, D subunit n=1 Tax=C... 124 9e-27 UniRef50_C6X0Z4 NADH-ubiquinone oxidoreductase chain D n=1 Tax=F... 124 1e-26 UniRef50_Q1QP34 NADH-quinone oxidoreductase subunit D 1 n=9 Tax=... 122 3e-26 UniRef50_C6WGH3 NADH dehydrogenase (Quinone) n=1 Tax=Actinosynne... 119 3e-25 UniRef50_O75306 NADH dehydrogenase [ubiquinone] iron-sulfur prot... 114 8e-24 UniRef50_A9BJL6 NADH dehydrogenase (Quinone) n=3 Tax=Thermotogac... 114 1e-23 UniRef50_B3ES55 NADH-quinone oxidoreductase subunit D n=19 Tax=B... 113 2e-23 UniRef50_A3ZL03 NADH dehydrogenase (Ubiquinone) n=1 Tax=Blastopi... 113 3e-23 UniRef50_C1AB36 NADH-quinone oxidoreductase chain D n=1 Tax=Gemm... 112 3e-23 UniRef50_A9G9T3 NADH-quinone oxidoreductase subunit D 2 n=5 Tax=... 111 8e-23 UniRef50_A6UVJ6 Hydrogenase, component E-formate hydrogenlyase s... 109 3e-22 UniRef50_B3T914 Putative Respiratory-chain NADH dehydrogenase, 4... 108 7e-22 UniRef50_B8GAR8 NADH-ubiquinone oxidoreductase chain 49kDa n=3 T... 107 1e-21 UniRef50_A9A347 NADH dehydrogenase (Quinone) n=3 Tax=Thaumarchae... 106 3e-21 UniRef50_Q0BPG8 Formate hydrogenlyase subunit 5 n=1 Tax=Granulib... 103 2e-20 UniRef50_B0SCU7 Metal (Ni/Fe) hydrogenase, large subunit n=2 Tax... 100 1e-19 UniRef50_D1HPS0 Whole genome shotgun sequence of line PN40024, s... 96 3e-18 UniRef50_A7H9V5 NADH-quinone oxidoreductase subunit D 2 n=8 Tax=... 94 1e-17 UniRef50_UPI000186E11F NADH-ubiquinone oxidoreductase 49 kDa sub... 92 8e-17 UniRef50_C0SF51 NADH-ubiquinone oxidoreductase 49 kDa subunit n=... 91 1e-16 UniRef50_Q056K8 Metal (Ni/Fe) hydrogenase, large subunit n=4 Tax... 90 2e-16 UniRef50_UPI000038DF6E Ni,Fe-hydrogenase III large subunit n=1 T... 89 7e-16 UniRef50_Q5DUX5 NADH-ubiquinone oxidoreductase 49 kDa subunit n=... 88 9e-16 UniRef50_P15689 NADH-ubiquinone oxidoreductase 49 kDa subunit n=... 86 4e-15 UniRef50_Q6L0U1 Formate hydrogenlyase subunit 5 n=1 Tax=Picrophi... 86 4e-15 UniRef50_D1Y9R2 Respiratory-chain NADH dehydrogenase, 49 Kd subu... 84 1e-14 UniRef50_C7JEU8 NADH-ubiquinone oxidoreductase 49kDa subunit n=8... 83 3e-14 UniRef50_B5ZIZ9 Ni Fe-hydrogenase III large subunit-like protein... 78 8e-13 UniRef50_Q978D6 Formate hydrogenlyase subunit 3 n=1 Tax=Thermopl... 77 2e-12 UniRef50_B3QUS1 NADH-quinone oxidoreductase n=1 Tax=Chloroherpet... 75 5e-12 UniRef50_B5YL31 NADH-quinone oxidoreductase n=1 Tax=Thermodesulf... 75 7e-12 UniRef50_D1LDT9 NADH dehydrogenase subunit 7 (Fragment) n=2 Tax=... 73 3e-11 UniRef50_P19496 Coenzyme F420 hydrogenase subunit alpha n=2 Tax=... 72 6e-11 UniRef50_Q1WLV6 Mitochondrial NADH:ubiquinone oxidoreductase 49k... 72 7e-11 UniRef50_UPI0001693946 NADH dehydrogenase subunit C n=1 Tax=Paen... 70 2e-10 UniRef50_Q1PWG9 NADH-quinone oxidoreductase n=1 Tax=Candidatus K... 70 3e-10 UniRef50_Q2S5J1 NADH-quinone oxidoreductase n=3 Tax=Rhodothermac... 68 7e-10 UniRef50_P80489 Coenzyme F420 hydrogenase subunit alpha n=11 Tax... 68 9e-10 UniRef50_B6YTV8 Coenzyme F420 hydrogenase alpha subunit n=1 Tax=... 67 2e-09 UniRef50_Q2FTW5 Membrane bound hydrogenase subunit mbhK n=1 Tax=... 67 2e-09 UniRef50_Q5FU77 Putative uncharacterized protein n=1 Tax=Glucono... 65 1e-08 UniRef50_A1ALK5 NADH dehydrogenase (Ubiquinone), 30 kDa subunit ... 64 1e-08 UniRef50_C5A2R8 Coenzyme F420 hydrogenase subunit alpha (FrhA) n... 64 1e-08 UniRef50_P31883 Quinone-reactive Ni/Fe-hydrogenase large chain n... 64 1e-08 UniRef50_C1TPN9 Ni,Fe-hydrogenase III component G n=1 Tax=Dethio... 64 1e-08 UniRef50_A5UMA1 Coenzyme F420-reducing hydrogenase, alpha subuni... 64 1e-08 UniRef50_Q00404 F420-non-reducing hydrogenase vhc subunit A n=10... 64 2e-08 UniRef50_B8IZ17 Nickel-dependent hydrogenase large subunit n=17 ... 63 3e-08 UniRef50_A9VS96 NADH (Or F420H2) dehydrogenase, subunit C n=15 T... 63 4e-08 UniRef50_B5IS23 Respiratory-chain NADH dehydrogenase, 30 Kd subu... 63 4e-08 UniRef50_A8M620 NADH-quinone oxidoreductase subunit C n=14 Tax=A... 62 6e-08 UniRef50_Q7G6A6 NAD, putative n=3 Tax=Magnoliophyta RepID=Q7G6A6... 62 7e-08 UniRef50_A6DBU3 Nickel-dependent hydrogenase, large subunit n=1 ... 62 8e-08 UniRef50_P21852 Periplasmic [NiFe] hydrogenase large subunit n=1... 61 9e-08 UniRef50_A9G9T0 NADH-quinone oxidoreductase n=1 Tax=Sorangium ce... 61 1e-07 UniRef50_B4UIA3 NADH-quinone oxidoreductase n=4 Tax=Anaeromyxoba... 61 1e-07 UniRef50_A1SE29 NADH-quinone oxidoreductase subunit C n=166 Tax=... 60 2e-07 UniRef50_P0ACD8 Hydrogenase-1 large chain n=159 Tax=Bacteria Rep... 60 2e-07 UniRef50_A2SS22 NADH dehydrogenase (Ubiquinone), 30 kDa subunit ... 60 3e-07 UniRef50_Q00390 Coenzyme F420 hydrogenase subunit alpha n=9 Tax=... 60 3e-07 UniRef50_Q3AU04 Hydrogenase/sulfur reductase, alpha subunit n=10... 60 3e-07 UniRef50_A4J658 NADH-quinone oxidoreductase n=1 Tax=Desulfotomac... 59 4e-07 UniRef50_C6A408 Membrane-bound hydrogenase MBH 1, subunit Mbh1K ... 59 4e-07 UniRef50_B6YU97 Membrane bound hydrogenase, NiFe-hydrogenase lar... 59 4e-07 UniRef50_B3QY46 NADH-quinone oxidoreductase subunit C n=1 Tax=Ch... 59 4e-07 UniRef50_C9LVK2 NADH-quinone oxidoreductase n=1 Tax=Selenomonas ... 59 4e-07 UniRef50_P31891 Uptake hydrogenase large subunit n=45 Tax=root R... 59 5e-07 UniRef50_Q1NLI0 NADH dehydrogenase (Ubiquinone), 30 kDa subunit ... 58 8e-07 UniRef50_UPI0001985C72 PREDICTED: similar to NADH dehydrogenase ... 58 8e-07 UniRef50_A7NIW0 NADH-quinone oxidoreductase subunit C n=6 Tax=Ch... 58 8e-07 UniRef50_O66988 Hydrogenase large subunit n=1 Tax=Aquifex aeolic... 58 9e-07 UniRef50_B3E9J3 Nickel-dependent hydrogenase large subunit n=5 T... 58 9e-07 UniRef50_A9W1N1 NADH-quinone oxidoreductase subunit C n=9 Tax=Al... 58 1e-06 UniRef50_B5I9P0 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 57 1e-06 UniRef50_C1ZK67 NADH-quinone oxidoreductase n=1 Tax=Planctomyces... 57 2e-06 UniRef50_B5IS37 Respiratory-chain NADH dehydrogenase, 30 Kd subu... 57 2e-06 UniRef50_C4PZT7 NADH-ubiquinone oxidoreductase fe-s protein 2 (N... 57 2e-06 UniRef50_B5IEA3 Nickel-dependent hydrogenase superfamily n=3 Tax... 57 2e-06 UniRef50_P18188 Periplasmic [NiFe] hydrogenase large subunit n=2... 57 2e-06 UniRef50_Q11XR7 NADH-quinone oxidoreductase n=4 Tax=Sphingobacte... 57 2e-06 UniRef50_B9L8N1 Nickel-dependent hydrogenase, large subunit n=1 ... 57 2e-06 UniRef50_C1RIP5 NADH dehydrogenase subunit C n=2 Tax=Actinomycet... 57 3e-06 UniRef50_P0ACE1 Hydrogenase-2 large chain n=154 Tax=Bacteria Rep... 56 3e-06 UniRef50_A2BJ95 NAD(P)H-quinone oxidoreductase subunit J n=1 Tax... 56 4e-06 UniRef50_D1CCD3 NADH-quinone oxidoreductase n=1 Tax=Thermobaculu... 56 4e-06 UniRef50_C4V3S3 Possible NADH (Or F420H2) dehydrogenase, subunit... 55 5e-06 UniRef50_C1F9E1 NADH-quinone oxidoreductase n=1 Tax=Acidobacteri... 55 6e-06 UniRef50_D2R5G8 NADH (Or F420H2) dehydrogenase, subunit C n=1 Ta... 55 6e-06 UniRef50_C6A3Z4 Membrane-bound hydrogenase MBH 2, subunit Mbh2K ... 55 6e-06 UniRef50_A9BJL7 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 55 6e-06 UniRef50_B9L171 NADH-quinone oxidoreductase n=2 Tax=Thermomicrob... 55 7e-06 UniRef50_D1U6F4 Nickel-dependent hydrogenase large subunit n=1 T... 55 7e-06 UniRef50_A6Q3L3 Ni-Fe hydrogenase, large subunit HupV n=1 Tax=Ni... 55 8e-06 UniRef50_B5YHQ8 Hydrogenase/sulfur reductase, alpha subunit n=2 ... 55 1e-05 UniRef50_B0TH79 Proton-translocating NADH-ubiquinone oxidoreduct... 54 1e-05 UniRef50_A1W1H6 NADH-quinone oxidoreductase n=18 Tax=Campylobact... 54 1e-05 UniRef50_D2L5T2 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 54 1e-05 UniRef50_Q24X55 Hup-type Ni,Fe-hydrogenase large subunit n=6 Tax... 54 1e-05 UniRef50_Q02CU1 NADH-quinone oxidoreductase n=1 Tax=Candidatus S... 54 2e-05 UniRef50_C0VXU2 Hydrogenase (Acceptor) n=2 Tax=Corynebacterium g... 54 2e-05 UniRef50_B3TC55 Putative Respiratory-chain NADH dehydrogenase, 3... 54 2e-05 UniRef50_A8LIT7 NADH-quinone oxidoreductase subunit C n=51 Tax=A... 54 2e-05 >UniRef50_P16431 Formate hydrogenlyase subunit 5 n=104 Tax=Bacteria RepID=HYCE_ECOLI Length = 569 Score = 1185 bits (3066), Expect = 0.0, Method: Compositional matrix adjust. Identities = 569/569 (100%), Positives = 569/569 (100%) Query: 1 MSEEKLGQHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVL 60 MSEEKLGQHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVL Sbjct: 1 MSEEKLGQHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVL 60 Query: 61 FGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRD 120 FGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRD Sbjct: 61 FGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRD 120 Query: 121 MYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNN 180 MYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNN Sbjct: 121 MYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNN 180 Query: 181 VVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 240 VVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV Sbjct: 181 VVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 240 Query: 241 CGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG 300 CGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG Sbjct: 241 CGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG 300 Query: 301 FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELV 360 FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELV Sbjct: 301 FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELV 360 Query: 361 DVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVH 420 DVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVH Sbjct: 361 DVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVH 420 Query: 421 SEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGD 480 SEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGD Sbjct: 421 SEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGD 480 Query: 481 DIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTV 540 DIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTV Sbjct: 481 DIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTV 540 Query: 541 VDVRKKKSKVVPYKELERYSIERKNSPLK 569 VDVRKKKSKVVPYKELERYSIERKNSPLK Sbjct: 541 VDVRKKKSKVVPYKELERYSIERKNSPLK 569 >UniRef50_P77329 Hydrogenase-4 component G n=130 Tax=Bacteria RepID=HYFG_ECOLI Length = 555 Score = 858 bits (2217), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/568 (70%), Positives = 468/568 (82%), Gaps = 17/568 (2%) Query: 2 SEEKLGQHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVLF 61 S G+ LAAL FPG VLD QT +Q+T+TVK+N LP+VV++LYY+ GWL VLF Sbjct: 5 SSSNRGEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLF 64 Query: 62 GNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDM 121 GNDER LNGHYAVYY LSME KCWI V+ VDA+ E+PSVTPRVPAAVWGERE+RDM Sbjct: 65 GNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDM 124 Query: 122 YGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNV 181 YGLIPVGLPD+RRLVLPDDWP++++PLRKD+MDYR RP PTTD+ETY FINE G+ V Sbjct: 125 YGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINE-GNSDARV 183 Query: 182 VPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 241 +P+GPLH+TSDEPGHFRLFVDGE I+DADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC Sbjct: 184 IPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 243 Query: 242 GICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGF 301 GICGFAHS AYT SVENA+GI+VP+RA IR+ILLEVERLHSHLLNLGL+CHF GFD+GF Sbjct: 244 GICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGF 303 Query: 302 MQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVD 361 MQFFRVRE SM MAE+L G+RKTYGLNLIGG+RRD+LK+ +QT +L ++MR +V ELV+ Sbjct: 304 MQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVE 363 Query: 362 VLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHS 421 +LL+TPNMEQRT GIG LD +IARD R DHP+ YG +P + + Sbjct: 364 MLLATPNMEQRTQGIGILDRQIARDL----------------RFDHPYADYGNIPKTLFT 407 Query: 422 EQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDD 481 G DV SR+ VR+ E + +L M+++ LDN+P PL+ EGF+Y PH FALGF EAPRG+D Sbjct: 408 FTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGED 467 Query: 482 IHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVV 541 +HWSM GDNQKL+RWRCRAATYANWP LRYMLRGNTVSDAPLIIGSLDPCYSCTDR+T+V Sbjct: 468 VHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTLV 527 Query: 542 DVRKKKSKVVPYKELERYSIERKNSPLK 569 DVRK++SK VPYKE+ERY I+R SPLK Sbjct: 528 DVRKRQSKTVPYKEIERYGIDRNRSPLK 555 >UniRef50_A1RWL3 NADH dehydrogenase (Ubiquinone), 30 kDa subunit n=2 Tax=Archaea RepID=A1RWL3_THEPD Length = 567 Score = 573 bits (1478), Expect = e-162, Method: Compositional matrix adjust. Identities = 273/550 (49%), Positives = 381/550 (69%), Gaps = 9/550 (1%) Query: 20 GVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVLFGNDERKLNGHYAVYYVLS 79 G++L DQL + V+ LPEV ++YY+ GG+LS + G+DER L+G Y +YYV S Sbjct: 18 GLLLGVEKPYPDQLYLYVERTKLPEVCSYVYYELGGFLSTMAGSDERSLHGAYRLYYVFS 77 Query: 80 MEKG----TKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRL 135 +E+G K W+ V + + ++ SVTP++PAA W EREVRD+ GL+P PD RRL Sbjct: 78 IEEGYEDGKKPWVVVVTNIPPHDTKFSSVTPKIPAASWYEREVRDLLGLVPENHPDPRRL 137 Query: 136 VLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPG 195 VLPDDWP+ ++PLRK+ Y +RP A EF + + VPIGP+H +DEPG Sbjct: 138 VLPDDWPEGVHPLRKE-FTYTERPPSV--ARKCEFRPSVEGEGIMQVPIGPVHAVADEPG 194 Query: 196 HFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTS 255 FR+F+DGE ++D DYR+FYVHRG+EKLAE+R+ YN+V F+++R+CGICG+AHS AY + Sbjct: 195 QFRVFLDGEKVVDVDYRMFYVHRGIEKLAESRLTYNQVPFIAERICGICGYAHSCAYCQA 254 Query: 256 VENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMA 315 VE A+GI+VPERA IR ++LEVERLHSHLLNLGLACH GFD GFM FF+ RE M MA Sbjct: 255 VEQALGIEVPERALYIRTLMLEVERLHSHLLNLGLACHLAGFDWGFMAFFKAREKVMYMA 314 Query: 316 EILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVG 375 E+LTG RKTYG+N++GG+RRD+ +D + ++ +++ +E + ++D +LST + R Sbjct: 315 ELLTGGRKTYGMNVVGGVRRDITEDRAKKALEILKEVEKEYKAVLDAVLSTSTLVSRAKD 374 Query: 376 IGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRI 435 +G L ++AR S VGP+ R S RDTR DHP+ Y + +V DV++RL VR Sbjct: 375 VGVLPRDVARKVSVVGPVARGSSIKRDTRKDHPYAAYSEVDFKVPVHSEGDVLARLSVRA 434 Query: 436 NEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYR 495 E + +++I L+N+PGGP+ E Y P+ LG+ EAPRG+D+H+ +TG + K+YR Sbjct: 435 EETFETISIIRQVLENMPGGPIQAEVKEYRPYARGLGYVEAPRGEDVHFVITGPHSKVYR 494 Query: 496 WRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVVDVRKKKSKVVPYKE 555 WR RA+TY NWP + YM RG T++D PLIIGS+DPCYSCT+R+ VVDV+ +++V PY+ Sbjct: 495 WRVRASTYNNWPAIPYMCRGYTLADLPLIIGSIDPCYSCTERVIVVDVKSGRTRVFPYEY 554 Query: 556 LERYSIERKN 565 L S+ RK Sbjct: 555 L--VSLSRKG 562 >UniRef50_B6YTW8 Hydrogenase 4, component G or formate hydrogen lyase, subunit 5 n=5 Tax=Thermococcaceae RepID=B6YTW8_THEON Length = 584 Score = 477 bits (1228), Expect = e-133, Method: Compositional matrix adjust. Identities = 251/563 (44%), Positives = 350/563 (62%), Gaps = 12/563 (2%) Query: 5 KLGQHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGW----LSVL 60 K+ + YL + E F + D +Q +TV+ LPE+V + + W LS + Sbjct: 24 KVTREYLDEIIEKFGEKIRDVKQAAYNQWIITVEREDLPEIVLY-FLNHPEWKETQLSSM 82 Query: 61 FGNDERKLNGHYAVYYVLSME-KGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVR 119 DER LNG +++ Y LS+ K ++ VR + + P + S+ + A W ERE Sbjct: 83 VATDERPLNGKFSITYWLSVNGKAGDFYLGVRAYLPEDDPRFTSIAAKHRGANWYEREAM 142 Query: 120 DMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKN 179 +M GL G PD RRLVLPDDWP +YPLRKD Y P E + E K Sbjct: 143 EMLGLTAEGHPDPRRLVLPDDWPSCVYPLRKD-FHYSNSPP----GEKFYPYKE-PKKDE 196 Query: 180 NVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDR 239 VVP GP HV +E HFRL+V GE I D DYR FY HRG+EK++E R+ Y++V F+++R Sbjct: 197 IVVPYGPYHVALEEAAHFRLYVKGETITDVDYRGFYAHRGIEKISEGRLTYDQVCFIAER 256 Query: 240 VCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDS 299 +CGICG HSTAY +VENA GI+VPERA+ IR I+LE+ERLHSHLLN G+ H G+D Sbjct: 257 ICGICGCTHSTAYCQAVENAGGIEVPERAEYIRTIVLEIERLHSHLLNFGIVSHLVGYDY 316 Query: 300 GFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQEL 359 GFM+ +R+RE M +AE LTG RKTYG+ L+GG+RRDLL+ + ++++ E EL Sbjct: 317 GFMKAWRIREHVMWLAERLTGNRKTYGMLLVGGVRRDLLEYRKSLIEDVLKKIKTEFSEL 376 Query: 360 VDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEV 419 VD +ST +R G+G L ++A+++ GP+ R SG D R DHP+ Y L +V Sbjct: 377 VDEAISTSTFVKRLEGVGVLPYKVAKEWDVDGPLGRGSGRDFDVRRDHPYAAYKYLDFKV 436 Query: 420 HSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRG 479 + DV++R VRI EV+ ++ +I+ LD +PGG ++ E P+ A+G EAPRG Sbjct: 437 PVYKEGDVLARALVRIEEVFESIWIIEQALDQMPGGDILAEYKEIPPYSEAIGMTEAPRG 496 Query: 480 DDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMT 539 ++IH+ MTG+N K+YR+R RAATY N P + M+RG T++DAPLI+ S+DPCYSCT+R+ Sbjct: 497 ENIHYVMTGENNKVYRYRARAATYNNLPAVPDMMRGYTIADAPLIVASIDPCYSCTERVQ 556 Query: 540 VVDVRKKKSKVVPYKELERYSIE 562 VVDV K +V+ E + SI+ Sbjct: 557 VVDVESGKVRVLSETEFNKLSIK 579 >UniRef50_B6YWP8 Hydrogenase 4, subunit 5 n=1 Tax=Thermococcus onnurineus NA1 RepID=B6YWP8_THEON Length = 540 Score = 461 bits (1186), Expect = e-128, Method: Compositional matrix adjust. Identities = 229/528 (43%), Positives = 337/528 (63%), Gaps = 14/528 (2%) Query: 22 VLDHAWQTKDQLTVT-VKVNYLPEVVEFLYYKQGGWLSVLFGNDERKLNGHYAVYYVLSM 80 +L+H D++TV V + + E+ L+ ++G + S G DER +NG +A+Y++ + Sbjct: 11 ILEH----NDKMTVAEVGASNIREIARALF-ERGYYYSSGMGVDERPINGRFAMYHIFNC 65 Query: 81 EKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDD 140 + + ++ +++ PE PS+TP + A W ERE DM G++ G P RL+LPDD Sbjct: 66 DTEGR-YVVLKITSPEGSPEVPSITPVIKGAEWSEREAMDMLGIVFSGHPKPERLILPDD 124 Query: 141 WPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNV-VPIGPLHVTSDEPGHFRL 199 WP+ +YPLRKD Y ++ P+ E E KK+ + +P+GP H + EP +F L Sbjct: 125 WPEGVYPLRKD-FPYNKKLPPSKPIE-----KEREHKKDVMEIPLGPYHPSLHEPEYFEL 178 Query: 200 FVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENA 259 +V G+ ++DA+YR F++HRGMEKLAE+RM N++ FL++R+CGICG HS AY +VE+A Sbjct: 179 YVKGDKVVDAEYRGFHIHRGMEKLAESRMTINQIPFLAERICGICGCTHSAAYCQAVEDA 238 Query: 260 MGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILT 319 GI VPERAQ IR I+LEVER+HSHLL G+ CH GFDSGFM +R RE M +AE++T Sbjct: 239 AGIYVPERAQYIRTIMLEVERIHSHLLWFGVVCHLLGFDSGFMHIWRAREYIMDIAELIT 298 Query: 320 GARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRL 379 G RKTYG+N++GG+RRD+ +D +T +L + +E +E++D + + +R G+G L Sbjct: 299 GNRKTYGINIVGGVRRDITEDKKEKTLKLLDMVEKESREVLDNIAEMKELRERMEGVGVL 358 Query: 380 DPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVY 439 + AR+ VGPM R+SG D R DHP+ Y L +V + DV +R VR E++ Sbjct: 359 PKKEAREIGVVGPMARSSGIDTDVRRDHPYAAYKDLDFKVPVYKEGDVFARFLVRYEEIF 418 Query: 440 TALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCR 499 + NMI L+N+P G L+ + + P + +G EAPRG++IH +T +YRW R Sbjct: 419 ESFNMIRQALENMPPGELINDEYEIPPFKLGIGVTEAPRGENIHAVITWGENMIYRWHPR 478 Query: 500 AATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVVDVRKKK 547 AATY N P + MLRGN V+DAPLII S+DPC+SCTD ++++D K Sbjct: 479 AATYNNLPAVPIMLRGNDVADAPLIIASIDPCFSCTDHVSIIDSESGK 526 >UniRef50_C5A3D4 Formate hydrogenlyase I subunit F (Mhy1F) n=2 Tax=Thermococcus RepID=C5A3D4_THEGJ Length = 601 Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust. Identities = 234/564 (41%), Positives = 347/564 (61%), Gaps = 19/564 (3%) Query: 11 LAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLY----YKQGGWLSVLFGNDER 66 L EAF + + T Q + LP+ V + + +K+ LS G DER Sbjct: 40 LKEFYEAFKEHIRECKRMTYGQYMFVIDREVLPDAVLWWHNHPEFKETH-LSTAVGTDER 98 Query: 67 KLNGHYAVYYVLSME-----KGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDM 121 LNG + L+++ W+ ++ + A+ P +PSV ++PAA+W EREV+D+ Sbjct: 99 PLNGKFVYMPFLNVQVEPQNMDENYWVFLKAYMPADDPSFPSVAAKLPAALWIEREVKDL 158 Query: 122 YGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNV 181 G PVG PD RRL+LP+DWP+ +YPLRKD MDYR P E E + + Sbjct: 159 LGFNPVGHPDPRRLILPEDWPEGVYPLRKD-MDYRHSPMAEVKTEYRE-----TPEGTTL 212 Query: 182 VPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 241 VP+GP+H +EP HFRLFV GE I+D DYR FY HRG+EK E R+ YN+V FL++R+C Sbjct: 213 VPMGPVHAGIEEPAHFRLFVKGEEIVDVDYRGFYSHRGIEKTGEGRLTYNQVLFLAERIC 272 Query: 242 GICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGF 301 GICG+ HS +Y +VE + +P+RA+ IR ++LE+ER+H+HLL +G+A H G+D+GF Sbjct: 273 GICGYQHSVSYAMAVERLADVDIPDRARYIRTLMLELERIHNHLLWVGIAAHLVGYDTGF 332 Query: 302 MQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVD 361 M +R+RE M + E LTG RK YG+N++GG+RRD+L + ++ +Q+R E ++ +D Sbjct: 333 MHAWRIREPVMWLVERLTGNRKQYGMNIVGGVRRDILDYRKEEILKVVKQIREETKKFLD 392 Query: 362 VLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHP---FVGYGLLPME 418 + L+T +R G+G L ++A+ +S +GP RASG DTR D + Y + + Sbjct: 393 IALNTNTFIKRAEGVGILPYKVAKAYSVLGPTARASGRRIDTRLDQATKTAMAYNEVDFK 452 Query: 419 VHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPR 478 V + DV++R+ VR++E++ +L +++ +D +PGG +MV + ALGF EA R Sbjct: 453 VPVYKEGDVLARVLVRMDELFESLWIVEQLIDQMPGGDIMVPIGDLPEYEEALGFTEAHR 512 Query: 479 GDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRM 538 G+ +H+ MTG+ K+YRW+ RA TY N P + ML+G V+DAPLII S+DPCYSCT+R+ Sbjct: 513 GEVVHYVMTGEKNKVYRWKVRAPTYNNLPAVPEMLKGYHVADAPLIIASIDPCYSCTERV 572 Query: 539 TVVDVRKKKSKVVPYKELERYSIE 562 VDV K KV+ E SI+ Sbjct: 573 QFVDVETGKVKVLTEAEFNELSIK 596 >UniRef50_B7R5K6 Hydrogenase-4 component G n=1 Tax=Thermococcus sp. AM4 RepID=B7R5K6_9EURY Length = 545 Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust. Identities = 231/517 (44%), Positives = 327/517 (63%), Gaps = 16/517 (3%) Query: 31 DQLTVT-VKVNYLPEVVEFLYYKQGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWIT 89 D++TV V + E+ + L+ G + S G DER +N +A+Y+V + E + + Sbjct: 16 DRVTVAEVSPERVREIAKGLF-NAGCYYSCGMGVDERPVNMRFAMYHVFNCE-AERRHVI 73 Query: 90 VRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLR 149 +++ N+ PS+TP + A W ERE DM G+I G P+ RL+LP+DWP+ +YPLR Sbjct: 74 LKLTTPTNELTLPSITPVIEGASWSEREAMDMLGIIFEGHPEPERLILPEDWPEGVYPLR 133 Query: 150 KDSMDYRQRPAPTTDAETYEFINELGDKKNNV----VPIGPLHVTSDEPGHFRLFVDGEN 205 KD Y ++ P E G KK VP+GP H T EP +F L+V G+ Sbjct: 134 KD-FPYNKKLPPAKPKE--------GRKKPRPDIIEVPLGPYHPTLHEPEYFELYVKGDK 184 Query: 206 IIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVP 265 I+DA YR F++HRGMEKLAE+RM N+V FL++R+CGICG HSTAY +VE+A I VP Sbjct: 185 IVDAKYRGFHIHRGMEKLAESRMTLNQVPFLAERICGICGCTHSTAYCQAVEDATNIYVP 244 Query: 266 ERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTY 325 ERA+ IR I+LEVERLHSHLL G+ACH GFDSGFM +R RE M +AE++TG RKTY Sbjct: 245 ERARYIRTIMLEVERLHSHLLWFGVACHLLGFDSGFMHLWRAREYIMDIAELITGNRKTY 304 Query: 326 GLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIAR 385 G+NLIGG+RRD+ ++ + +L ++ +E++D ++ +++R +G L + R Sbjct: 305 GINLIGGVRRDIPEEKKRKVLELLDLAEKDSREILDNVVKMGELKERMENVGVLPKKKGR 364 Query: 386 DFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMI 445 + VGP+ RASG D R DHP+ YG L EV +G DV+SR VR +E + + +MI Sbjct: 365 EIGVVGPVARASGIDTDVRRDHPYAAYGDLDFEVPVYKGEDVLSRFLVRYDETFQSFSMI 424 Query: 446 DYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYAN 505 LDN+P G L+ E + + LG EAPRG+D+H +T K+YRW RA+TY N Sbjct: 425 RQALDNMPEGELINEDYEIPGFKLGLGVTEAPRGEDVHVVITWGENKVYRWHPRASTYNN 484 Query: 506 WPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVVD 542 P + MLRGN ++DAP+II S+DPC+SCTD ++++D Sbjct: 485 LPAVPVMLRGNDIADAPIIIASIDPCFSCTDHVSIID 521 >UniRef50_A3DNE9 NADH dehydrogenase (Ubiquinone), 30 kDa subunit n=2 Tax=Desulfurococcaceae RepID=A3DNE9_STAMF Length = 548 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 224/545 (41%), Positives = 326/545 (59%), Gaps = 17/545 (3%) Query: 4 EKLGQHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVLFGN 63 + + QH + L + +V + + L + + NYL + V+ ++ + + Sbjct: 6 DSVRQHIIEKLGD----IVKETKYIGDQALMLRIDRNYLRKAVDIIHNDLNAYFRTMVAV 61 Query: 64 DERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYG 123 DER LNG +A YY+ ++ I V+ A++P PS+ VPAA W E E D+ G Sbjct: 62 DERSLNGTFASYYIFGLD-AAHLNIIVKTHTSADEPVLPSIIDIVPAADWYELEAWDLLG 120 Query: 124 LIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVP 183 I R VLPD+WP+ +YPLRKD ++Y RP P +P Sbjct: 121 -IKFENRKVHRFVLPDEWPEGIYPLRKD-VEYTYRPKPRKVPRQ--------PPTGQRIP 170 Query: 184 IGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAET-RMGYNEVTFLSDRVCG 242 IGP H EP +F L+V+GE ++D +Y F+VHRG+EKLAE R Y ++ FL++R+CG Sbjct: 171 IGPYHPALHEPEYFELYVEGEKVVDVEYNGFHVHRGIEKLAEAPRFNYQKIPFLAERICG 230 Query: 243 ICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFM 302 ICGF HS +YT SVE A I VPERA+ IR+I+LE+ERLHSHLL +G+ CH G+D+GFM Sbjct: 231 ICGFVHSVSYTMSVERAAKIDVPERAEYIRSIILEIERLHSHLLWIGVVCHLLGYDAGFM 290 Query: 303 QFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDV 362 +R+RE M +AE+LTG+RKTYG+NL+GG+R+D+ D + + + +R E + L D+ Sbjct: 291 HTWRIREKVMVLAELLTGSRKTYGINLVGGVRKDINMDKIEAVKNTIEYIRSEFKHLSDL 350 Query: 363 LLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSE 422 + S + +R G G L + AR S VGP+ R SG RD R D+P+ Y + +V Sbjct: 351 ITSISQIVKRASGTGILSRDDARKLSVVGPVARGSGLDRDVRRDYPYAAYRDVYFKVPVY 410 Query: 423 QGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDI 482 D ++RL VRI+EV+ ++ +++ +D LPGGP+M E +G EAPRG+ I Sbjct: 411 NEGDNLARLLVRIDEVFESIYILEQLIDKLPGGPIMAEKLEVPEGVIGIGNVEAPRGEVI 470 Query: 483 HWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVVD 542 H ++TG + YRWR RA TY N P L+ MLR ++DAPL I S+DPC+SCTDR+ +VD Sbjct: 471 HVTITGHGRP-YRWRVRAPTYQNIPALKIMLRDAPLADAPLTIASIDPCFSCTDRIVIVD 529 Query: 543 VRKKK 547 +R + Sbjct: 530 LRSNR 534 >UniRef50_Q2RXM4 NADH-ubiquinone oxidoreductase n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RXM4_RHORT Length = 561 Score = 420 bits (1079), Expect = e-116, Method: Compositional matrix adjust. Identities = 223/554 (40%), Positives = 334/554 (60%), Gaps = 12/554 (2%) Query: 8 QHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVLFGNDERK 67 Q L +N FPG V D+L + ++ + +++ G L D Sbjct: 5 QTILDDINARFPGCVTRGLAPQPDRLYLRTTTEHIRTLAAYVFNDLKGRLVTGVCTDMGP 64 Query: 68 LNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPV 127 + G Y + Y S++ +T+ D P+ P++T +P A W ERE DM G++ Sbjct: 65 VTGEYDIIYAFSLD-AEGILLTLTEPTDPKDPKVPTLTDLIPGADWHERENYDMLGVVAE 123 Query: 128 GLPDERRLVLPDDWPDELYPLRKD-SMDYRQRPAPTTDAETYEFINELGDK-KNNVVPIG 185 G P+ RRL+L +DWP++L+P+RKD D++ P + T + LG++ K ++ +G Sbjct: 124 GHPNPRRLLLSEDWPEDLFPMRKDFPHDFK---PPKAEKITTPLRDPLGNESKATIISVG 180 Query: 186 PLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICG 245 P T DEP +FRLF +GE II +DYR F+ HRG+EKL++T + YN+V F+++RVCGICG Sbjct: 181 PFFPTLDEPAYFRLFCEGEEIIGSDYRGFFSHRGIEKLSDTVLDYNQVPFMAERVCGICG 240 Query: 246 FAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFF 305 F HS Y +VE+A GI++P RA+ IR+I++E+ERLHSHLL LGLA H+ GFD+ MQ + Sbjct: 241 FVHSACYCMAVEDAAGIEIPPRAKYIRSIMMELERLHSHLLWLGLAGHYLGFDTVLMQSW 300 Query: 306 RVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQ--QMRREVQELVDVL 363 R+RE M + E +TG RKTYG+NL+GG+RRDL D I + +A ++ E +EL+ + Sbjct: 301 RIREPIMWLVEEITGNRKTYGMNLVGGVRRDL--DSAICDKIMAAVTKIGIECEELISAV 358 Query: 364 LSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQ 423 +++ R V +G L E AR VGP RASG D RAD+P+ + L + + Sbjct: 359 AGDESLKMRMVKVGVLSHEDARGICVVGPTARASGVHIDARADYPYAAFPDLDFKPSFHE 418 Query: 424 GCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPH-RFALGFAEAPRGDDI 482 G D+ +R VR++EV +++++I + LP G +M GF IP R G AEAPRG+ + Sbjct: 419 GGDIWARTLVRVDEVRSSVDLIKQMITKLPEGEIMA-GFGPIPAWREGYGIAEAPRGECV 477 Query: 483 HWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVVD 542 H+ TG + + YRWR RAATY + ML+G ++ D P+IIGS+DPC+SCT+R+ VD Sbjct: 478 HYVQTGKDNRPYRWRVRAATYPQLQAVPLMLKGMSIGDFPIIIGSIDPCFSCTERVLTVD 537 Query: 543 VRKKKSKVVPYKEL 556 + K + K+L Sbjct: 538 TKSKAIRTYTEKDL 551 >UniRef50_B5YKR2 Hydrogenase-4 component G n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKR2_THEYD Length = 541 Score = 414 bits (1065), Expect = e-114, Method: Compositional matrix adjust. Identities = 211/536 (39%), Positives = 325/536 (60%), Gaps = 7/536 (1%) Query: 22 VLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVLFGNDERKLNGHYAVYYVLSME 81 + D T + L V K + + EV + L QG + L D + Y S+ Sbjct: 11 ITDKVETTDENLIVYSKPSQIKEVAKLLVM-QGARFAHLTAIDFINQKNQIELNYFFSLI 69 Query: 82 KGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDW 141 + + V++ ++A++ S++ +PA +W ERE D++G+ G PD RRLVLPD+W Sbjct: 70 DDSMN-VIVKIPLEASELSISSISEIIPAVIWSERECNDLFGINFEGHPDPRRLVLPDNW 128 Query: 142 PDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFV 201 P E++PLRK+ Y +P + + ++ V+PIGP + + +EP +FRL V Sbjct: 129 PQEVHPLRKN-FSYNSKPPESKQPAPLK----KPEEGKTVIPIGPFYPSLEEPAYFRLIV 183 Query: 202 DGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMG 261 DGE I D DYR FYVHRG+EKLAE+ + Y ++ FL++R+CGICGF HS AY +VE A G Sbjct: 184 DGEEIADFDYRGFYVHRGIEKLAESVLNYQQIPFLAERICGICGFVHSCAYCQAVEKAAG 243 Query: 262 IQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGA 321 I++P RA+ IR++ LE+ERLHSHLL +GLA H GFD+ FMQ +R+RE M + EI+TG Sbjct: 244 IEIPLRAKFIRSLFLELERLHSHLLWVGLAAHIVGFDTLFMQAWRIREPVMYICEIITGN 303 Query: 322 RKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDP 381 RKTYG+N++GG+ D+ + ++ Q+ +EV+EL +++L ++ R +G L Sbjct: 304 RKTYGINIVGGVTIDVHNQHLKDIDKVISQIEKEVRELREIILDDEVIQLRFKNVGVLKY 363 Query: 382 EIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTA 441 + A+ + GP+ R SG D R + P+ Y +L + + + DV +R VR+ E+ + Sbjct: 364 DDAKKYCVCGPVARGSGINIDMRTNFPYAAYPMLNIRIPLNKSGDVWARTIVRLEEILIS 423 Query: 442 LNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAA 501 +N+I L+N+P GP ++ P + A+ + EAPRG H+ MTG + YRW RA Sbjct: 424 INIIRQILENIPEGPTSIKISKIEPWKEAVSYIEAPRGQLFHYVMTGPEGRPYRWSVRAP 483 Query: 502 TYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVVDVRKKKSKVVPYKELE 557 +Y N+ L ML+G +++DAPLIIGS+DPC+SCT+R +VD++ KV +EL+ Sbjct: 484 SYQNYQALSVMLKGASIADAPLIIGSIDPCFSCTERYEIVDLKTNSIKVYTAEELK 539 >UniRef50_A1ASR5 NADH dehydrogenase (Ubiquinone), 30 kDa subunit n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1ASR5_PELPD Length = 557 Score = 394 bits (1013), Expect = e-108, Method: Compositional matrix adjust. Identities = 214/557 (38%), Positives = 321/557 (57%), Gaps = 7/557 (1%) Query: 11 LAALNEAFPGVVLDHAWQTKD-QLTVTVKVNYLPEVVEFLYYKQGGWLSVLFGNDERKLN 69 L L + F G + A D +L V + + + ++++ + G+D+R + Sbjct: 6 LQQLKDKF-GSAIQQADVVNDMRLLVYIDPASVKPICQYIFRDMDARYVISIGSDDRPYS 64 Query: 70 GHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGL 129 G + V++ + +K K ++ ++ P S++ +PAA W ERE++D+ G+ PVG Sbjct: 65 GKFLVFHQFAFDK-EKILFSIICQLPGENPRIDSISGIIPAANWAERELKDLLGIEPVGH 123 Query: 130 PDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHV 189 P +RLVLPD WPD +PLRKD + P E EF + VP GP H Sbjct: 124 PYPKRLVLPDAWPDGHHPLRKD---FAWNKIPEGYDEEREFDFDETPPGCTAVPFGPFHP 180 Query: 190 TSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHS 249 T DEP HFRL+VDGE + +YR F VHRG+EKL+E+ +GYN+V +++R+CGICG HS Sbjct: 181 TLDEPEHFRLYVDGEFVRGCEYRGFMVHRGIEKLSESVLGYNDVPMMAERICGICGCVHS 240 Query: 250 TAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRE 309 A+ +VEN G+ VP RA+ IR I+LE+ERLHSH + +GLACH GFD+ FMQ +R+RE Sbjct: 241 LAFCQAVENGAGVIVPPRAEFIRTIMLEIERLHSHPMWVGLACHLVGFDTLFMQAWRIRE 300 Query: 310 TSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNM 369 M +AE +TG RKTYGL +IGG+R D + + +TR + ++ E +++V + N+ Sbjct: 301 PIMWLAEKITGNRKTYGLGIIGGVRWDFTPELIAETRAVLDKLESEWRQVVAAVSKDKNI 360 Query: 370 EQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVIS 429 RT G+G D + ++ VGP+ R G D R DHP+ Y + +V + DV Sbjct: 361 MARTSGVGMADKALCKEMGLVGPVARGGGVDIDARRDHPYAAYDRVDFKVITHNTADVWG 420 Query: 430 RLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPH-RFALGFAEAPRGDDIHWSMTG 488 R+ VR+ EV+ ++N+I D +P GPL+ + T +P R EAPRG+ H+++TG Sbjct: 421 RVVVRMLEVFESINIIRQCFDKMPQGPLVADITTELPAGRVGYTSIEAPRGESHHFAITG 480 Query: 489 DNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVVDVRKKKS 548 D+ + RWR RA TY N + M++ ++D + +G +DPC SCTDRM +D+R Sbjct: 481 DDNRPRRWRARAPTYQNLQGIPAMIKDQRIADMQISLGGIDPCMSCTDRMETIDIRTGAR 540 Query: 549 KVVPYKELERYSIERKN 565 K EL S RK Sbjct: 541 KSWTKAELLSLSRSRKG 557 >UniRef50_Q1PZL4 Similar to membrane-bound [NiFe]-hydrogenase-3, large subunit (Chain E) n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZL4_9BACT Length = 531 Score = 367 bits (941), Expect = e-100, Method: Compositional matrix adjust. Identities = 191/532 (35%), Positives = 311/532 (58%), Gaps = 11/532 (2%) Query: 8 QHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVLFGNDERK 67 Q ++ L+ F G + ++++ V+ K L V ++ LS + NDER Sbjct: 7 QLHIDKLSGQFKGNITISRSFLENEIYVSTKKENLLNVCLYIKDIFNAVLSSMICNDERT 66 Query: 68 LNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPV 127 L+ H+ +YYV S+++ ++ V + V +PE+PS+TP++PAA W ERE++DM+GLIPV Sbjct: 67 LDKHFKIYYVFSLQR-EDTFLIVTIPVSEQQPEFPSITPQIPAAHWYEREIKDMFGLIPV 125 Query: 128 GLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPL 187 G P LVL ++P+ YPLRKD D + R P +++ F G+ + P+GP+ Sbjct: 126 GHPRPETLVLHGNFPENTYPLRKD-FDIQTR-IPHLESKL-PFFRVEGEGVFEI-PVGPI 181 Query: 188 HVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFA 247 H EPGHFR G++I D +LF+ H+G EK+ ET M Y + FL++R+CG+C + Sbjct: 182 HAGVIEPGHFRFSAVGDSIFYLDAKLFFTHKGTEKIFET-MPYTKALFLAERICGVCAAS 240 Query: 248 HSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRV 307 H+T Y ++E I++P RA+ IR I++E+ER+++H+ ++G C T F G FR+ Sbjct: 241 HATGYCQAIEKVAEIEIPPRARFIRTIVMELERIYNHIGDVGNICAGTAFLLGIAHGFRI 300 Query: 308 RETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTP 367 RE ++ E +TG R G+ IGG+R D+ D L ++++ ++L ++ + Sbjct: 301 REYLQQLNETITGNRYLRGMLAIGGVRFDINDDLEKHILSLLNHVKKDFKDLTKMMFKSS 360 Query: 368 NMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEV---HSEQG 424 ++ R GRL EIAR VG RASG +DTR +HP+ Y + ++ H E Sbjct: 361 SLLDRLETTGRLSEEIARGLGVVGVAARASGIVQDTRVNHPYAAYEEVDFDIPVFHYEG- 419 Query: 425 CDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHW 484 DV++R++VR++EVY ++ +I+ + + GPL P++ AL + E+PRG++I+W Sbjct: 420 -DVLARIRVRVDEVYQSIYIIEQCFEKMRPGPLKTPIKELPPYKQALSYVESPRGENIYW 478 Query: 485 SMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 MT KL+R++ R+ ++ NWP + + + GN V D PLI S + CYSCTD Sbjct: 479 IMTAPGNKLFRYKVRSPSFCNWPAIPFAVPGNIVPDFPLINKSFELCYSCTD 530 >UniRef50_C8W240 Hydrogenase, large subunit-like protein n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W240_DESAS Length = 525 Score = 343 bits (879), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 183/486 (37%), Positives = 282/486 (58%), Gaps = 10/486 (2%) Query: 53 QGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAV 112 +G +L + G DER NGH++VY V + G + ++ ++A P + S++P +P+A Sbjct: 49 EGAYLLTMTGVDERDYNGHFSVYSVFGL-PGDTTLVETKIVLNAENPTFTSISPVMPSAH 107 Query: 113 WGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFIN 172 W ERE++DM G++P G PD RR+ + DWP +++P+RKD + RQ P E +F Sbjct: 108 WLEREIKDMLGIVPYGHPDLRRVAVHPDWPQDVFPMRKDFIAGRQ--VPRVQGEM-QFCK 164 Query: 173 ELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNE 232 G+ V P+GP+H EPGHFR F GE++I+ +LFY HRG+EK AE + + + Sbjct: 165 VEGEGLYQV-PVGPVHAGIIEPGHFRFFTFGEDVINLQAQLFYTHRGIEKTAEGKH-FLD 222 Query: 233 VTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLAC 292 +++RVCG+C +H+ +Y ++E+ GI P RA+ IR +LLE+ERL++H+ ++G C Sbjct: 223 AVLVAERVCGVCSASHAVSYAQAIESLAGINAPLRARYIRTVLLEMERLYNHVGDIGNMC 282 Query: 293 HFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQM 352 GF G + ++E M+M L G R G + GG++ DL KD R L + Sbjct: 283 AGIGFSFGISRGAELKERLMRMNMKLAGHRYLRGTVVPGGVKIDL-KDTEGIGRAL-DTV 340 Query: 353 RREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGY 412 +RE++EL D +LS+ ++ R G L + ARD GP RASG RD R + P+ Y Sbjct: 341 KRELKELTDTMLSSQSLLDRMQTTGVLPTDAARDLGATGPAARASGVNRDLRREFPYAAY 400 Query: 413 GLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYI-PHRFAL 471 + +V + DV RL RI E + ++I +NLP G L TY+ P+ A+ Sbjct: 401 RRVSFQVPIQHEGDVYCRLIQRIEESEQSFDIIRQVFNNLPAGELQAP-ITYLQPYHTAV 459 Query: 472 GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPC 531 G+ E+ RG ++HW M+G + +YR+ R+A++ NWP + L GN V D PLI S + C Sbjct: 460 GYTESARGANVHWVMSGPDNTVYRYMVRSASHCNWPVVPLCLPGNIVPDFPLINKSFELC 519 Query: 532 YSCTDR 537 Y+C DR Sbjct: 520 YACLDR 525 >UniRef50_Q0W2B9 Hydrogenase, large subunit-like protein (HycE-like) n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W2B9_UNCMA Length = 524 Score = 337 bits (864), Expect = 8e-91, Method: Compositional matrix adjust. Identities = 184/536 (34%), Positives = 298/536 (55%), Gaps = 13/536 (2%) Query: 1 MSEEKLGQHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVL 60 M+ + + AA E + A + + V + LP V F+ + G L+ L Sbjct: 1 MTAKNITNEITAAFGEE-----MASARDVGNNVFVRAGKDALPYVASFVAKRYGASLATL 55 Query: 61 FGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRD 120 D R++ G Y +Y V+ + +++ EV + + S+TP + +A W ERE+ D Sbjct: 56 HVADTRQMTGGYTMYAVMPVAS-ENLIVSIEAEVPESPGTFQSLTPMIYSANWFEREIAD 114 Query: 121 MYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNN 180 M+GL PVG PD R LVL D WP++ +PLRKD+ P +TY + + + Sbjct: 115 MFGLTPVGHPDLRPLVLYDTWPEDYHPLRKDA------PGRPPKVDTYYPYHRVEGEGVF 168 Query: 181 VVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 240 +P+GP+H EPGHFR V GE ++ + R+ YVH+G+EK++E+ M Y++ FLS+R Sbjct: 169 EIPVGPVHAGVIEPGHFRFSVAGEPVLMLEIRMGYVHKGIEKISES-MTYDKGVFLSERT 227 Query: 241 CGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG 300 G G AHSTAY +VE GI+VP+RA+ IR + LE+ER+++HL ++G T ++ G Sbjct: 228 SGDNGMAHSTAYCQAVEQLAGIEVPDRARYIRTVFLEMERIYNHLGDVGGISLDTAYNVG 287 Query: 301 FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELV 360 + +RE +++ E +TG+R +N IGG+R+DL ++D+ + R + + + ++ V Sbjct: 288 AQHAYILRERMLQLNECITGSRLLRSVNKIGGVRQDLTREDIEKIRTAIIKAKLDFKDFV 347 Query: 361 DVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVH 420 D++ ++ RT G+L E A + VGP RASG +RD R DHP+ Y L VH Sbjct: 348 DLVNRQTSILDRTETTGKLPLEAAVSLNIVGPGARASGVSRDVRRDHPYAAYSDLNFAVH 407 Query: 421 SEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGD 480 + DV +R++V+I E+Y ++++I+ LD LP G + R + EAPRG+ Sbjct: 408 IRKEGDVNARMQVKIGEIYESMSIIEQALDRLPAGKIRAATGNIPQGRVGISLVEAPRGE 467 Query: 481 DIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 +HW ++G+N + +R + R ++ NW + GN V D PL+ S + YS D Sbjct: 468 LLHWILSGENDRPFRHKIRDPSFCNWLAMEIATPGNIVPDFPLVNKSFNLSYSGND 523 >UniRef50_A1RZ40 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 Tax=Thermofilum pendens Hrk 5 RepID=A1RZ40_THEPD Length = 537 Score = 285 bits (730), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 165/468 (35%), Positives = 264/468 (56%), Gaps = 9/468 (1%) Query: 90 VRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWP-DELYPL 148 V V++ P PS+ VP A + E+EVRD++G+ ++RR +LP+ +P D PL Sbjct: 59 VSVKLPRANPTLPSIAQVVPGADYYEKEVRDLFGVNFQDGAEKRRFILPECYPPDAPPPL 118 Query: 149 RKD----SMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGE 204 KD S+ APT + L ++ VVP+GP H EP +F L VDGE Sbjct: 119 LKDVDPASVKALVAEAPTCQVDAVGLHAPL-SPESVVVPVGPYHPAFKEPEYFSLVVDGE 177 Query: 205 NIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQV 264 I+ A R+ +VHRG+EK AE+R + ++ FL +R+CGIC +H+ + +VE + ++V Sbjct: 178 RIVKAFVRIGFVHRGIEKAAESRSFFRDI-FLVERICGICSTSHAWCFVEAVERLLNMEV 236 Query: 265 PERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKT 324 P RA +R ++ E+ER+HSH L LGL ++TGF++ FM + +RET M + E ++G R Sbjct: 237 PRRAAYLRTLVAELERIHSHALWLGLVGYWTGFETMFMWVWGLRETIMDLLEEISGNRVH 296 Query: 325 YGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIA 384 IGG+RRD+ + + + + RRE + L++ L + + RT GIGR + A Sbjct: 297 KSFVTIGGVRRDVPDALLRRVSERVETFRREFESLLESLSYSEEIISRTKGIGRYSLDDA 356 Query: 385 RDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNM 444 R + VGP+ RA+G D R P+ Y + EV + DV + ++VR+ EV + ++ Sbjct: 357 RKYCAVGPVRRAAGDPFDVRRIEPYGAYPEVEFEVPTSNEGDVYNLIRVRVKEVVESASI 416 Query: 445 IDYGLDNLPGG-PLMVEGFT-YIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAAT 502 I ++ +P G P+ + F +P A EAPRG+ ++ + YR + R T Sbjct: 417 IQQLVEKMPSGNPVPPKPFMGTVPEGEAYSRIEAPRGELFYYVKANNTHNPYRVKVRTPT 476 Query: 503 YANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVVDVRKKKSKV 550 AN +L G T+SD P+++ S+DPC+SC DR+T++D+ K+ +V Sbjct: 477 LANIQLAAKILEGQTLSDFPVVVTSIDPCFSCMDRVTIIDLSGKRREV 524 >UniRef50_B1ZSF2 NADH dehydrogenase (Quinone) n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZSF2_OPITP Length = 531 Score = 284 bits (727), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 175/524 (33%), Positives = 264/524 (50%), Gaps = 6/524 (1%) Query: 14 LNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVLFGNDERKLNGHYA 73 L + F G + D+L + + + LY K GG L +F D R + Sbjct: 14 LQQRFEGQLQRVDASQPDELHLHAPLELASALCSTLYRKSGGRLVSVFAEDGRAGGAGFY 73 Query: 74 VYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDER 133 VYY+ +++ ++ VRV V A +PE S+T V A W ERE++D++GL VG P+ R Sbjct: 74 VYYLYAVD-AAHGFVLVRVVVPAERPELISLTNAVHAVNWQEREIQDLFGLKLVGHPNPR 132 Query: 134 RLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDE 193 R VL DDWP E++PLRKD D Q P E ++F E+ + VP+GP+H E Sbjct: 133 RCVLHDDWP-EVFPLRKD-FDL-QTQLPPFSGERHKF-REVAGEGVFQVPVGPVHAGVIE 188 Query: 194 PGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYT 253 PGHF V GE ++ R+FYVH+G EKL E+ + L++ + G FAH+TA+ Sbjct: 189 PGHFLFSVAGEPVLYLQLRMFYVHKGTEKLFES-LPITHGVRLAESISGDSAFAHATAFC 247 Query: 254 TSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMK 313 ++E A G+ P R + +R + LE+ER+ +H+ ++G C F + M R++E ++ Sbjct: 248 HAIERAAGVAAPPRGRALRTLCLELERISNHVADIGAICTDVAFVTAQMHALRLKEQVLR 307 Query: 314 MAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRT 373 E LTG R G+ +GG+R D + + ++ ++LV+++ S R Sbjct: 308 WNEQLTGNRLLRGMACLGGVRFDFDSAQLDALAAFVDTLEQQFKDLVELIRSHSGTRDRL 367 Query: 374 VGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKV 433 G L P +ARD VG RASG D R D P Y + V DV R+ V Sbjct: 368 ETTGVLAPAVARDLGIVGIAGRASGIDHDLRRDCPTDFYDQVQFTVPVFTEGDVQRRMVV 427 Query: 434 RINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKL 493 R E++ +L +I L +PGG + R ALG+ E RG+ HW T +L Sbjct: 428 RREELFQSLGIIRQVLAKMPGGAIATPVGDVPADRIALGYVEGWRGEIFHWVHTAPGNRL 487 Query: 494 YRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 R + + + NWP L + GN + D P++ S + YS TDR Sbjct: 488 ARCKIKDPSLQNWPALSEAILGNIIPDFPVVNKSFNLSYSGTDR 531 >UniRef50_Q24ST8 Formate hydrogenlyase subunit 5 n=2 Tax=Desulfitobacterium hafniense RepID=Q24ST8_DESHY Length = 554 Score = 284 bits (726), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 187/541 (34%), Positives = 271/541 (50%), Gaps = 49/541 (9%) Query: 29 TKDQLTVTVKVNYLPEVVEFLYYKQGG--WLSVLFGNDERKLNGHYAVYYVLSMEKGTKC 86 TK++ V +K LPEV+E L+ K L GNDER L GH V Y+L G Sbjct: 31 TKNEGLVWLKPACLPEVMEQLWLKVPSRPLLMTHVGNDERSL-GHGFVIYLLLHFPGD-- 87 Query: 87 WITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELY 146 T+ + + +PS+T PA W EREVRD+ GL P G PD R LVL W Y Sbjct: 88 -FTLTLGARGIEKSFPSLTLLCPALNWPEREVRDLLGLHPDGHPDPRPLVLHPGWTGGFY 146 Query: 147 PLRK------------------DSMDYRQRPAPTTDAE---TYEFINELGDKKNNVVPIG 185 PLRK + + +P T+AE T+E +P+G Sbjct: 147 PLRKPCPETPASIGGECPGEALKEVSFNPQPLSFTEAEGEGTFE------------IPVG 194 Query: 186 PLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICG 245 P+H EPGHFR GE ++ D +LFY H+G+EKL E + E + +RVCG+C Sbjct: 195 PVHAGIIEPGHFRFQTIGETVLHLDAQLFYTHKGIEKLLEGK-DLEEGLKIVERVCGVCA 253 Query: 246 FAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFF 305 +H+ AY +VE G++VP R +L E+ERL++H+ ++G C GF G + Sbjct: 254 VSHALAYCEAVEKLKGMEVPRWILGWRTVLAELERLYNHVGDIGNLCAGVGFALGNVNAL 313 Query: 306 RVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLS 365 + +E ++ L G R G GG+++ ++ ++ ++ ++ +E + ++ Sbjct: 314 QNKEQLQRLNHQLFGHRFLRGNITPGGVKKIPQGEERAYLQRRLAELEQDFEEWLPLIQE 373 Query: 366 TPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGC 425 QR + G L + A D GP RASG ++D R H + Y L ME EQ Sbjct: 374 HDGFRQRAITTGVLSKQSALDLGVTGPAARASGISQDWRERHAHLLYEELKMEPQVEQEG 433 Query: 426 DVISRLKVRINEVYTALNMI------DYGLDNLPGGPLMVEG---FTYIPHRFALGFAEA 476 DV SRL VR+ EV + ++ D+ D + G + G F+ P+ FA G AE+ Sbjct: 434 DVWSRLMVRVREVKQSFALLAELLEGDFLQDTVEQGDFDLNGSGAFSPQPYSFAWGCAES 493 Query: 477 PRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 PRG D+ W M D K+YR R R+A+YANW + ++GN V D PLI S + CYSC D Sbjct: 494 PRGTDVIWLMLDDEGKIYRCRIRSASYANWAAVPLAVQGNIVPDFPLINKSFELCYSCCD 553 Query: 537 R 537 R Sbjct: 554 R 554 >UniRef50_B8I2P5 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=2 Tax=Clostridium RepID=B8I2P5_CLOCE Length = 530 Score = 275 bits (702), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 162/480 (33%), Positives = 258/480 (53%), Gaps = 9/480 (1%) Query: 60 LFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDAN-KPEYPSVTPRVPAAVWGEREV 118 LF ND ++ VYY ++ + + IT+ +++ + + S+ VPAA ERE+ Sbjct: 56 LFANDTTPIDNKLTVYYTFAV-RSSNTLITLYSKLENDGSAKVDSIALEVPAASLYEREI 114 Query: 119 RDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKK 178 DMYG++ LPD R LV ++P +++PLR++ P + E + I G + Sbjct: 115 HDMYGIVFEELPDSRELVHHGNFPLDVHPLRRNFKSNTHLPFQQRELE-FSTITGEGVFE 173 Query: 179 NNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSD 238 VP+GP+H EPGHFR V GE II+ + +L+YVHRG+EKL E + Y +V S+ Sbjct: 174 ---VPVGPVHAGIIEPGHFRFSVAGEPIINLEAKLYYVHRGLEKLCENQH-YMKVLLFSE 229 Query: 239 RVCGICGFAHSTAYTTSVENAMGIQ-VPERAQMIRAILLEVERLHSHLLNLGLACHFTGF 297 R+ G F +S A+ ++E GI +PERA R + E+ER+ HL ++ C T + Sbjct: 230 RISGDETFTNSLAFCQAIEKLNGITYIPERAVYSRVLFAELERICGHLGDIQGLCVDTAY 289 Query: 298 DSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQ 357 QF +R + E LTG+R N GG+RRD ++ + + ++ +E + Sbjct: 290 IFPSGQFAMMRRWIQLLNEQLTGSRFLRNTNKPGGLRRDFVRSNEKIILECINKLDKEFK 349 Query: 358 ELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPM 417 E V ++ + R G L+ IA D + VGP RASG D R + P+ Y L Sbjct: 350 ETVAIIKNNGMFIDRVEHTGILENSIAVDLNVVGPGGRASGVKTDVRKEFPYAAYSKLKF 409 Query: 418 EVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLP-GGPLMVEGFTYIPHRFALGFAEA 476 V CDV R+ V+I EV ++N+I L+ +P GP+ V+ P+ +A G E+ Sbjct: 410 NVPEHSNCDVNCRMNVKIEEVIESINIIKQVLEKMPEEGPVSVDIGELKPYSYAFGMTES 469 Query: 477 PRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 PRG+++H+ MTG+N ++R++ R ++ NWP L + + NT++D PLI S + Y+ D Sbjct: 470 PRGENLHFVMTGENNTIFRYKVRTPSFCNWPALCHAVNTNTLTDFPLINKSFNLSYAGND 529 >UniRef50_A1AUU6 Ech hydrogenase subunit E n=3 Tax=Bacteria RepID=A1AUU6_PELPD Length = 409 Score = 271 bits (692), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 146/387 (37%), Positives = 213/387 (55%), Gaps = 5/387 (1%) Query: 181 VVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 240 +PIGP H EP +F + V GE I+ RL Y HRG+EK E R Y + +L +R+ Sbjct: 5 TIPIGPQHPALKEPANFSITVTGEKIVTTSMRLGYNHRGIEKACEER-SYLQCLYLLERI 63 Query: 241 CGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG 300 CGIC HSTAY +VE G+ +P RA IR+++ E+ER+HSHLL LG+A H GFD+ Sbjct: 64 CGICSHTHSTAYIQAVEEIAGLTIPPRANYIRSLVGELERIHSHLLWLGVAGHEIGFDTL 123 Query: 301 FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELV 360 M +R RE M + L G R YG+N +GG+RRD+ + + R + + + Sbjct: 124 LMYSWRDRELVMDILAELGGNRVNYGINTLGGVRRDITPEQIEMIRNSVNTLEERTKYYI 183 Query: 361 DVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVH 420 +V P + R G+G L E A S VGP +RAS RD R D P+ YG L V Sbjct: 184 EVATEEPTLAARLAGVGYLSHEDALLLSAVGPTLRASNVDRDIRRDDPYAAYGSLDFRVI 243 Query: 421 SEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGD 480 ++ CDV R VR+ E+ + MI L+ LP G + V+ IP A EAPRG+ Sbjct: 244 TDDHCDVYGRTLVRVGELMESFRMIRQILNELPEGEVSVKAPRKIPAGEACSRYEAPRGE 303 Query: 481 DIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTV 540 H+ K R + RA+T+AN + M+ N ++D P+I+ ++DPC+SC DR Sbjct: 304 CFHYIRANGTDKPERVKVRASTFANIQAVAKMMENNNLADVPIIVAAIDPCFSCADR--C 361 Query: 541 VDVRKKKSKVVPYKELERYSIE--RKN 565 +++ + +++ + EL R +E R+N Sbjct: 362 LELLGEGRQLMEWSELRRRGVEWYRRN 388 >UniRef50_Q0W6T4 [NiFe]-hydrogenase, large subunit (EchE-like) n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W6T4_UNCMA Length = 486 Score = 259 bits (661), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 150/468 (32%), Positives = 246/468 (52%), Gaps = 18/468 (3%) Query: 86 CWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDEL 145 C +R +D P SVT P A W ERE+ + G+ PD R L LP +W Sbjct: 28 CHTILRTFLDRENPVLKSVTTLTPQADWSEREMIEFLGVRAEEHPDPRHLWLPLNW---- 83 Query: 146 YPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGEN 205 + AP ++ + + + + +P GP H E +F++ V+ E Sbjct: 84 ------EQMHTDEAAPEKKPQSIQASDHITTMPVSTIPYGPYHPAFIESNYFKMAVEDEV 137 Query: 206 IIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVP 265 + AD +L + HR + KL E R Y ++ +L++RVCG+C H+ ++ +VEN + VP Sbjct: 138 VKKADLKLGFNHRSIIKLMERRDYYKDI-YLAERVCGLCNAHHALSFCLAVENIGQVTVP 196 Query: 266 ERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTY 325 +RA +IR ++ E+ER+ SHL+ +G+ G+ + MQF R+RE E+++G R T+ Sbjct: 197 KRADIIRTMICEMERIQSHLMAIGILGDLVGYKTMLMQFLRIREDIQDSLELVSGQRVTH 256 Query: 326 GLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIAR 385 GL +GG+RRD+ ++ +++ VQ L D +LS + R +G L PE A Sbjct: 257 GLITLGGVRRDITPAQSNFVKRKLASLKKGVQTLYDEMLSNNVLIGRLKNVGVLPPEEAV 316 Query: 386 DFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMI 445 VGP R SG D R + P+ Y L ++ ++ GCD ++R++V++ E +++++ Sbjct: 317 RLGAVGPTARGSGQRLDVRKNTPYAYYENLDWDIVTDNGCDSLARVEVKMREALVSISIV 376 Query: 446 DYGLDNLPG-GPLMVEGFTYIPHRFALGFAEAPRGDDI-HWSMTGDNQKLYRWRCRAATY 503 + L+ L P ++ +P ALG E PRG+ + H + G N + R R T+ Sbjct: 377 EQCLEKLSTVPPEIITKLEELPCAEALGKTEPPRGELLYHVASNGTNTPEF-VRIRVPTF 435 Query: 504 ANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVVDVRKKKSKVV 551 + +L G+ V+D P I+GS+DPCYSCTDR+TV K +K+V Sbjct: 436 MTAYIMLKLLHGSYVADVPAIMGSIDPCYSCTDRVTV----HKDAKIV 479 >UniRef50_A5GBN1 Ech hydrogenase subunit E n=20 Tax=cellular organisms RepID=A5GBN1_GEOUR Length = 359 Score = 252 bits (643), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 138/360 (38%), Positives = 206/360 (57%), Gaps = 3/360 (0%) Query: 178 KNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLS 237 + N++PIGP H EP HF L + E +IDA + YVHRG+E+L E R + + ++ Sbjct: 3 QRNIIPIGPQHPILPEPIHFDLVTEDEKVIDAIPSISYVHRGLERLVEKR-DFIDFAHVA 61 Query: 238 DRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGF 297 DR+CG+C F HS Y +VE M I+VP+RA +R+I E+ R+HSH+ LG A GF Sbjct: 62 DRICGLCSFMHSLGYCQAVEEIMSIEVPQRALYLRSIWAELSRIHSHIFWLGAAADAFGF 121 Query: 298 DSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQ 357 +S FMQ R+RE + + E TG R G+ +GG+RRD+ D + ++ ++ Sbjct: 122 ESLFMQAMRLREPVLDIFEETTGGRVILGVCKVGGVRRDIDGDSLKGIVNRLTTLKGALE 181 Query: 358 ELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPM 417 EL +V L+ +++ R G+G L E A VGPM RASG A D RA + Y L + Sbjct: 182 ELSNVFLNDYSVQHRLAGVGFLSREDAYTLGCVGPMARASGLAIDMRA-LGYAAYKYLEV 240 Query: 418 EVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAP 477 E E D +R +VRI E++ A+++I + +P GP+ V+ T P E P Sbjct: 241 EPVVESAGDCHARCRVRIREIFHAIDLIRQAVGKIPAGPVDVK-VTGTPDGEYYSRVEQP 299 Query: 478 RGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 RG+ IH+ + L R+R R T++N P + +L+G+ ++D P II +LDPC SCT+R Sbjct: 300 RGEVIHYVKGNGARFLQRFRVRVPTFSNIPAMVKVLKGSQLADVPNIILTLDPCISCTER 359 >UniRef50_C7NUN7 NADH dehydrogenase (Quinone) n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NUN7_HALUD Length = 419 Score = 250 bits (638), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 141/398 (35%), Positives = 215/398 (54%), Gaps = 16/398 (4%) Query: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235 D +P+GP H + EP +F L VDGE I AD +L Y HRG+E+ ++ Y E + Sbjct: 4 DVSGTEIPVGPQHPSLKEPANFTLTVDGEVITGADLKLSYNHRGIEQAVLSK-SYLENIY 62 Query: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 295 L +R+CGIC AH+T++ VE+ + + VP RA IR ++ E+ER+HSH+L LG+A H Sbjct: 63 LLERICGICSHAHTTSFAIGVEDLLDLDVPRRANYIRTLIGELERIHSHMLWLGVAGHEI 122 Query: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 355 GFD+ + +R RE + + E +TG R Y +N IGG+R+DL + R+ + E Sbjct: 123 GFDTLWQYAWRDREIVLDLLEEITGNRIHYSINTIGGVRQDLTA----EQRETVLEKMDE 178 Query: 356 VQELVDVLLST-PNMEQ---RTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVG 411 ++E +D L T PN E R +G + E+AR++ GP+ RASG D R D P+ Sbjct: 179 LEERIDFYLETVPNEETVRMRCENVGTVSAELAREYCAAGPVGRASGLPVDVRRDAPYAA 238 Query: 412 YGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEG------FTYI 465 Y + +V ++ D+++R VRI E+ ++++I ++P G L I Sbjct: 239 YDEMDFDVITDTAGDLLARTTVRIREIAESISIIRQAAADIPDGDLKASPKPVQALLAQI 298 Query: 466 PHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLII 525 P + EAPRG+ IH+ R R T ANWPT+ LRG+ ++D P+++ Sbjct: 299 PEDDVVSRYEAPRGELIHYIRADGTDTPERVHIRVPTLANWPTVVEALRGSYIADTPIVV 358 Query: 526 GSLDPCYSCTDRMTV-VDVRKKKSKVVPYKELERYSIE 562 +DPC SCT R+ V D +EL Y +E Sbjct: 359 AGIDPCISCTSRIGVETDGSHGGEDSFNLEELREYGME 396 >UniRef50_C6A407 Membrane-bound hydrogenase MBH 1, subunit Mbh1L (NiFe hydrogenase catalytic subunit) n=4 Tax=Thermococcus RepID=C6A407_THESM Length = 430 Score = 249 bits (635), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 142/397 (35%), Positives = 217/397 (54%), Gaps = 16/397 (4%) Query: 182 VPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 241 +PIGP+H +EP F + +DGE II D +L Y RG+E +A R Y ++ +L +R+C Sbjct: 11 IPIGPIHPALEEPEKFIITLDGERIIHVDIKLGYNLRGLEWIA-MRRNYIQLLYLVERIC 69 Query: 242 GICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGF 301 GIC F+H+ YT +VE GI+VPERA+ IRAI+ E+ER+HSHLLNLG+ H G+D+ Sbjct: 70 GICSFSHNHTYTRAVEEMAGIEVPERAEYIRAIIGELERIHSHLLNLGVVGHAIGYDTVL 129 Query: 302 MQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELV- 360 + RE M + E + G R Y +N IGG+RRD+ + + + R EV V Sbjct: 130 HLSWLARERVMDILEAIGGNRVNYAMNTIGGVRRDIEEKHKRMILDMIKHYREEVMPKVE 189 Query: 361 DVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRAD-----HPFVGYG-L 414 ++ L P +E R G + IA ++S GP R SG +D R + +P +G + Sbjct: 190 EIFLYDPTVEARLRDAGVIPKRIALEYSAQGPTARGSGIKKDVRYNERLGVYPELGIKPI 249 Query: 415 LPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMV---EGFTYIPHRFA- 470 P E DV R+ VR+ E++ ++ +I+ D +P G + + T + A Sbjct: 250 TPKEFTGVIKGDVFDRMVVRVGELWQSMEIIEKAFDQMPEGKIKTFSKDNVTLTKLKKAE 309 Query: 471 ---LGFAEAPRGDDIHWSMTGDNQKL-YRWRCRAATYANWPTLRYMLRGNTVSDAPLIIG 526 +G EAPRG+ IH+ +W+ R T+ N + L G ++D P+ I Sbjct: 310 GAGIGRYEAPRGETIHYVRANPGTDTPAKWKAREPTFPNLFAVARALVGEQLADVPVAIA 369 Query: 527 SLDPCYSCTDRMTVVDVRKKKSKVVPYKELERYSIER 563 S+DPC SCTDR+ ++D K +V+ K+L + SIE+ Sbjct: 370 SIDPCLSCTDRVAIIDSETGKKRVLTEKDLLKASIEK 406 >UniRef50_Q2FTW4 Membrane bound hydrogenase subunit mbhL n=3 Tax=Euryarchaeota RepID=Q2FTW4_METHJ Length = 409 Score = 243 bits (621), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 137/396 (34%), Positives = 217/396 (54%), Gaps = 16/396 (4%) Query: 182 VPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 241 +PIGP+H EP +F ++GE I D+ HRG+E + R ++ L DR+C Sbjct: 10 LPIGPIHPALKEPINFTFQMNGEVIEKVDFAPGRAHRGIEWMG-MRRNPVQILHLCDRIC 68 Query: 242 GICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGF 301 GICG H+ + +VE I+VP+RA +R I+ E ER+ SH+L G+A H GFD+ F Sbjct: 69 GICGVHHALVFAQAVEQIADIEVPDRAYYVRTIIAEFERIQSHILWAGVAAHELGFDTLF 128 Query: 302 MQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVD 361 +++RE S+ + E +TG R YG+ ++GG RRD+ D + Q Q ++++V+ Sbjct: 129 YLAWQIREESVDVIEYITGNRVNYGIMMLGGTRRDITADMFPRLEQALQYYEGLLEKMVN 188 Query: 362 VLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYG------LL 415 + L+ + R G L A + + VGP RASG A D R D P+ YG +L Sbjct: 189 LFLNDKTIAMRCKDTGILTKRRALELATVGPTSRASGLAMDVRIDSPYAAYGDLDFDIVL 248 Query: 416 PMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEG-----FTYIPHRFA 470 P +SE DV R+ VRI E+ ++++I + +P GP++ E + Sbjct: 249 PDVYNSEGNGDVYDRIIVRIFEIKQSIDIIRQCMKQMPEGPVLAEEKYAKLLMNLKKASG 308 Query: 471 LGFA--EAPRGDDIHW-SMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGS 527 FA EAPRG+D+H+ M G + W+ +A+TY+N +L+G ++D P+I+ S Sbjct: 309 EAFARVEAPRGEDMHYVRMNGKQEAPEMWKVKASTYSNQMAWVEILQGEQIADIPIIVAS 368 Query: 528 LDPCYSCTDRMTVVDVRKKKSKVVPYKELERYSIER 563 +DPC SCTDR+ VV + + ++ + L R S+E+ Sbjct: 369 IDPCMSCTDRVAVVG-QDGNAGIMTKEHLHRLSVEK 403 >UniRef50_C1TPP0 Ni,Fe-hydrogenase III large subunit n=2 Tax=Synergistaceae RepID=C1TPP0_9BACT Length = 413 Score = 243 bits (619), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 140/406 (34%), Positives = 217/406 (53%), Gaps = 15/406 (3%) Query: 174 LGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEV 233 + + K +PIGP+HV EP L ++GE+I DA R +HRG+E +A R +V Sbjct: 1 MSETKTYKLPIGPVHVGLKEPITAWLDIEGEHIKDAVIRPGAIHRGVEFMARERNPI-QV 59 Query: 234 TFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACH 293 +L++RVCGIC F+H+ A+ +VE+A I+VP RAQ IR+++LE+ER+HSH+L G+AC+ Sbjct: 60 IYLAERVCGICSFSHAIAFVKAVEDAAQIEVPIRAQYIRSMVLELERIHSHILWSGVACY 119 Query: 294 FTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMR 353 GFDS F +RE M + E L+G R Y + +GG+R D+ + + R Sbjct: 120 TIGFDSAFHLGMMLREKVMDVLEALSGNRVNYAVTTVGGVRWDVTPAVVRTVMDMIHYYR 179 Query: 354 REVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYG 413 E + ++ P ++ R +G L E A + +GP R SG D R P+ Y Sbjct: 180 NEFASFYEAAINDPVVKARLRDVGVLTTEQAIKYCALGPTSRGSGVRADVRWSAPYDAYC 239 Query: 414 ------LLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEG-----F 462 ++P + E DV R VR+ EV +L++++ ++ LP G + E Sbjct: 240 DIHVEPVVPQDYTGEVHGDVYDRFLVRVYEVLQSLDILEKIMEGLPEGSITFEPKVNKLL 299 Query: 463 TYIPHRFALGFA--EAPRGDDIHW-SMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVS 519 T + +G+ EAPRGDD H + + + W+ RA TY+N + M + N ++ Sbjct: 300 TVLKKAEGVGYGCIEAPRGDDTHAVGLKAQQENVQWWKVRAPTYSNAVSWPLMFKDNELA 359 Query: 520 DAPLIIGSLDPCYSCTDRMTVVDVRKKKSKVVPYKELERYSIERKN 565 DAPLII S+DPC SC +RM + D VV +L + E+ + Sbjct: 360 DAPLIINSIDPCISCMERMVLSDTSSGTKSVVTKADLLKLCREKTD 405 >UniRef50_B2V8R2 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=3 Tax=Aquificales RepID=B2V8R2_SULSY Length = 524 Score = 242 bits (618), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 150/520 (28%), Positives = 275/520 (52%), Gaps = 12/520 (2%) Query: 21 VVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVLFGNDERKLNGH---YAVYYV 77 ++ D+++ T++++ + L +V ++L+ L+ + D+ + + YV Sbjct: 12 LITDYSFNTENEIVIHTSDFNLAKVSQYLFRDLDCELATVVATDDDDRFSDDRCFTIRYV 71 Query: 78 LSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVL 137 S K +I VE + K + S+ +PA W ERE+RDM+GL+P+ PD R LVL Sbjct: 72 YSYHKKNVFFI---VE-NKVKERFNSLANIIPALNWYEREIRDMFGLVPLNHPDPRPLVL 127 Query: 138 -PDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGH 196 P+++P +L+PLRKD D + RP + + YE+ G+ N++ +GP+H EPGH Sbjct: 128 FPENFPSDLHPLRKD-FDIKTRPEFKSYGK-YEYKEVEGEGVFNIL-VGPIHAGIIEPGH 184 Query: 197 FRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSV 256 FR + GE+I+ + R F+ HRG+EKLAE + EV + +V G +AH+ AY ++ Sbjct: 185 FRFSLAGEHILQLEIRHFWKHRGVEKLAEGKTA-EEVLEIVPKVSGDHSYAHTLAYVQAI 243 Query: 257 ENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAE 316 E ++P+RA+ IR + E+ERL +L ++ + G F ++E M++ + Sbjct: 244 EKLSNTEIPKRAKYIRVLFAELERLMCNLNDVAWLFQDVAYSFGAQGMFILKEEVMRLNK 303 Query: 317 ILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGI 376 LTG R + IGG+ DL ++ + + + + ++ + ++ R Sbjct: 304 ALTGNRFNKNVLKIGGVSVDLNQEKINLIIDKLGYITDKFEFYKKIIFDSASILDRFETT 363 Query: 377 GRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRIN 436 GR+ E ++ S +G RAS D R +HP++ Y L + + D +RLK R++ Sbjct: 364 GRILYETVKELSCIGYTARASDLKSDIRKEHPYLIYDKLTFTSQTFEEGDCFARLKCRLS 423 Query: 437 EVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRW 496 ++ ++++I L +LP G + + +R+ LG++E RG+ +++ T K+ R Sbjct: 424 DIEDSISIIKEVLSDLPDGEIFTQSNPLPANRWTLGYSEGQRGNIMYFVKTDKEGKIDRL 483 Query: 497 RCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 + R ++ NW +++ + G+ V+D PL+ SL+ Y+ TD Sbjct: 484 KIRDPSFNNWQAIQWAVLGDIVADFPLVNKSLNLSYAGTD 523 >UniRef50_P31895 Carbon monoxide-induced hydrogenase n=14 Tax=Bacteria RepID=COOH_RHORU Length = 361 Score = 242 bits (617), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 134/360 (37%), Positives = 192/360 (53%), Gaps = 8/360 (2%) Query: 182 VPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 241 +P+GPLHV +EP +FR+ VDGE ++ D +VHRG+E LA R Y + L++RVC Sbjct: 6 IPVGPLHVALEEPMYFRIEVDGEKVVSVDITAGHVHRGIEYLATKRNIYQNIV-LTERVC 64 Query: 242 GICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGF 301 +C +H Y ++E+ G+ VP RAQ +R I E +R+ SH+ N+ + H GFDS F Sbjct: 65 SLCSNSHPQTYCMALESITGMVVPPRAQYLRVIADETKRVASHMFNVAILAHIVGFDSLF 124 Query: 302 MQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDD----MIQTRQLAQQMRREVQ 357 M RE E + G R IGG++ DL KD + Q +L +R Sbjct: 125 MHVMEAREIMQDTKEAVFGNRMDIAAMAIGGVKYDLDKDGRDYFIGQLDKLEPTLR---D 181 Query: 358 ELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPM 417 E++ + + P++ RT GIG L D+ +GP+ R SGHA D R P+ Y L Sbjct: 182 EIIPLYQTNPSIVDRTRGIGVLSAADCVDYGLMGPVARGSGHAYDVRKQAPYAVYDRLDF 241 Query: 418 EVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAP 477 E+ + DV SR VR E T++ +I L ++P GP IP A+ EAP Sbjct: 242 EMALGEHGDVWSRAMVRWQEALTSIGLIRQCLRDMPDGPTKAGPVPPIPAGEAVAKTEAP 301 Query: 478 RGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 RG+ I++ T + R + R TY NW L M+ G +SD PLI+ S+DPC SCT+R Sbjct: 302 RGELIYYLKTNGTDRPERLKWRVPTYMNWDALNVMMAGARISDIPLIVNSIDPCISCTER 361 >UniRef50_A7I7D0 NADH dehydrogenase (Ubiquinone), 30 kDa subunit n=6 Tax=cellular organisms RepID=A7I7D0_METB6 Length = 526 Score = 241 bits (616), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 153/445 (34%), Positives = 231/445 (51%), Gaps = 14/445 (3%) Query: 97 NKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYR 156 N+ + S+ P+A W ERE RDMYG+ G D RRLVL + P YPL K + Sbjct: 90 NRKQATSIATIFPSATWPERECRDMYGIKFEGAFDTRRLVLHETCPAGFYPLEKS---VK 146 Query: 157 QRPAPTTD----AETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYR 212 P T AE Y F GD V P+GP+H EPGHFR V GE + + + R Sbjct: 147 NAPVATKKTVPPAEEYPFRTVSGDGVYQV-PVGPVHAGIIEPGHFRFSVIGETVFNLEIR 205 Query: 213 LFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIR 272 LFY HRG+EKLAE + V +++ V G A++T ++E GI VP+RA IR Sbjct: 206 LFYTHRGIEKLAEGKDPAACVR-VAEAVSGDESAANATGLCMAIERLSGITVPDRAWHIR 264 Query: 273 AILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGG 332 +L E ER+ SHL +L F G F +RE + E L+G+R G+ L GG Sbjct: 265 TVLCESERICSHLGDLSGMLTDVAFALGASHFAVLREEFFREQEKLSGSRFLRGMILPGG 324 Query: 333 IRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGP 392 I RD+ + + + R+ + +E + + ++LSTP++ R G + + + GP Sbjct: 325 ISRDIPVETLARYREFLARFAKEFRAGLAIVLSTPSVIDRFTQTGIIRKPLLGPLNITGP 384 Query: 393 MVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNL 452 + RASG RD R D P+ Y H DV++R V+ EV +L++I+ + + Sbjct: 385 VARASGSGRDVRVDSPYGMYDRFIPVPHPLNDGDVLARFTVKAAEVLDSLSLIEKVIAGM 444 Query: 453 PGGPLM-VEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRY 511 P GP++ +G + AL E PRG+++ W + +++R++ R A+Y NW + + Sbjct: 445 PEGPVISADG---VGDGAALALVEGPRGENLCWVEIREG-RVFRYKVRTASYCNWLAIEH 500 Query: 512 MLRGNTVSDAPLIIGSLDPCYSCTD 536 GN ++D P+I SL+ Y+ TD Sbjct: 501 AAPGNIIADFPVINKSLNLSYAGTD 525 >UniRef50_B5IS38 Respiratory-chain NADH dehydrogenase, 49 Kd subunit domain protein n=1 Tax=Thermococcus barophilus MP RepID=B5IS38_9EURY Length = 409 Score = 241 bits (614), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 128/395 (32%), Positives = 217/395 (54%), Gaps = 16/395 (4%) Query: 182 VPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 241 +PIGP+H EP V+GE I+ D + + HRG+E + R + +LS+R+C Sbjct: 8 IPIGPIHPALKEPIRVEAEVEGEKIVRVDVKRGFAHRGIEYMGMKRNAI-QTLYLSERIC 66 Query: 242 GICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGF 301 GIC +H A+ + E A+GI+ P RAQ IR I+ E+ER+HSH+L LG+ H GFDS Sbjct: 67 GICSISHPYAFVVTAEKALGIEAPPRAQYIRPIIAELERIHSHILWLGVIAHEMGFDSLL 126 Query: 302 MQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVD 361 ++ RE + + E+LTG R Y + +IGG+RRDL + + + + +++ + Sbjct: 127 FWTWKGREKVLDLLELLTGNRINYSVYMIGGVRRDLKESHIKAIKDAITYYWKFTEQMKE 186 Query: 362 VLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGY------GLL 415 ++LS P + RT G+ +L E+A + VGP+ RA+G D R D P+ Y ++ Sbjct: 187 IILSDPVYKARTRGVAQLSKEMALKLNVVGPVARAAGIRMDIRQDMPYDAYADIDVRAVV 246 Query: 416 PMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLM-VEGFTYIPHRF----- 469 P ++ E D VRI E+ +L++I+Y +DNLP G ++ + + + + Sbjct: 247 PQDIVGEAKGDAYDITMVRIYEIEQSLDIIEYCVDNLPEGKILAIPNYPALLAKIRRTKG 306 Query: 470 -ALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSL 528 A+G EAPRG+ +H+ W+ A +Y N + +L G V+D P+++ + Sbjct: 307 EAIGAHEAPRGEVVHYLKFDGRDGPSVWKVIAPSYNNINSWAPLLLGAEVADIPIVVAYI 366 Query: 529 DPCYSCTDRMTVVDVRKKKSKVVPYKELERYSIER 563 DPC C DR+ + ++ + KV+ Y+ + + ++E+ Sbjct: 367 DPCMCCNDRVAL--LKTPEGKVLGYEYIHKKAVEK 399 >UniRef50_C6A3Z3 Membrane-bound hydrogenase MBH 2, subunit Mbh2L (NiFe hydrogenase catalytic subunit) n=1 Tax=Thermococcus sibiricus MM 739 RepID=C6A3Z3_THESM Length = 412 Score = 239 bits (609), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 136/409 (33%), Positives = 212/409 (51%), Gaps = 27/409 (6%) Query: 177 KKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFL 236 K VPIGP+H EP V+GE I+ D + + HRG+E + R + +L Sbjct: 3 KTTYYVPIGPIHPALKEPIRVEAEVEGEKIVKVDVKRGFAHRGIEYMGMKRNAI-QTLYL 61 Query: 237 SDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTG 296 S+R+CGIC +H A+ E A+GI+ P RAQ IR I+ E+ER+HSH+L LG+ H G Sbjct: 62 SERICGICSISHPYAFVIGSEKALGIEAPPRAQYIRTIIAELERIHSHILWLGVIAHEIG 121 Query: 297 FDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREV 356 FDS ++ RE + + E +TG R Y + +IGG+RRDL + + + + Sbjct: 122 FDSLLFWTWKGREKVLDILEAITGNRINYSMYMIGGVRRDLKESHIRVLKDMITYYWEFT 181 Query: 357 QELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGY---- 412 + + +V LS P + RT G+ ++ ++A + VGP RA+G D R D P+ Y Sbjct: 182 EHMKEVFLSDPVYKARTRGVAQVSKDVALKLNLVGPTARAAGLRMDIRQDIPYDAYADID 241 Query: 413 --GLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFA 470 ++P ++ E D VRI E+ +L++I+Y +DNLP G ++ IP+ A Sbjct: 242 VKAVVPQDIVGEARGDAYDVTMVRIYEIEQSLDIIEYCIDNLPEGKILA-----IPNYIA 296 Query: 471 L------------GFAEAPRGDDIHW-SMTGDNQKLYRWRCRAATYANWPTLRYMLRGNT 517 L G EAPRG+ +H+ G W+ A +Y N + Y L G Sbjct: 297 LLNKIKKTEGEGIGAHEAPRGEVVHYFRYDGTRDGPAVWKVIAPSYNNINSWGYCLLGAE 356 Query: 518 VSDAPLIIGSLDPCYSCTDRMTVVDVRKKKSKVVPYKELERYSIERKNS 566 V+D P+++ +DPC C DR+ V V+ K++ Y L R ++E+ + Sbjct: 357 VADIPVVVAYIDPCMCCNDRVAV--VKDSTGKILDYSILHRKAVEKTRA 403 >UniRef50_B6YU98 Membrane bound hydrogenase, NiFe-hydrogenase large subunit 2 n=5 Tax=Euryarchaeota RepID=B6YU98_THEON Length = 426 Score = 238 bits (608), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 141/399 (35%), Positives = 224/399 (56%), Gaps = 21/399 (5%) Query: 182 VPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 241 +P GP+H +EP F L +DGE I++ D +L Y RG++ +A R Y ++ +L++R+C Sbjct: 11 IPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGLQWIA-YRRNYVQIMYLAERIC 69 Query: 242 GICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGF 301 GIC F+H+ YT +VE A GI+VPERA+ IRAI+ E+ER+HSHLLNLG+ H G+D+ Sbjct: 70 GICSFSHNHTYTRAVEEAAGIEVPERAEYIRAIIGELERVHSHLLNLGVLGHDIGYDTVL 129 Query: 302 MQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVD 361 + RE M + E ++G R Y + IGG+RRD+ + + + R + ++ + Sbjct: 130 HLTWLARERVMDVLEAISGNRVNYSMVTIGGVRRDIDEKGKRLILDMIKYYRSIMPQIEE 189 Query: 362 VLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTR-----ADHPFVGYG-LL 415 V L P +E R + +A + VGP RASG D R +P +G ++ Sbjct: 190 VFLHDPTIEARLRDCAVISKRVALEQGAVGPTARASGLKVDARWSERLGVYPDLGVKPVM 249 Query: 416 PMEVHSEQ-GCDVISRLKVRINEVYTALNMIDYGLDNLPGGP--------LMVEGFTYIP 466 P +V E+ DV R VRI E+Y +L+M+++ LD +P G ++V + Sbjct: 250 PQDVTGEKPHGDVFDRAAVRIGEIYQSLDMLEHALDQMPEGKIKTFPKDNILVAKLKIMV 309 Query: 467 HRFALGFAEAPRGDDIHW--SMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLI 524 +G EAPRG+ +H+ G ++ L RW+ R T+ N + + G+ V+D L Sbjct: 310 DGEGIGRYEAPRGELVHYVRGKKGSDKPL-RWKPREPTFPNLFAVAKGVTGDQVADFVLA 368 Query: 525 IGSLDPCYSCTDRMTVVDVRKKKSKVVPYKELERYSIER 563 + S+DPC SCTDR+ V V+ K +++ +L R SI++ Sbjct: 369 VASIDPCLSCTDRVAV--VQDGKKRILTETDLLRLSIKK 405 >UniRef50_Q0W3I1 Ech hydrogenase, subunit E n=2 Tax=Euryarchaeota RepID=Q0W3I1_UNCMA Length = 359 Score = 237 bits (604), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 131/360 (36%), Positives = 207/360 (57%), Gaps = 5/360 (1%) Query: 180 NVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDR 239 + V GP H EP +L +DGE + D + YVHRG+EK E YN+ +L++R Sbjct: 3 STVQFGPQHPVWIEPIRLKLALDGELVKDVELEAGYVHRGLEKKFE--WDYNKAAYLAER 60 Query: 240 VCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDS 299 VCGIC HST + +VE+ M +++P RA +IR I+LE+ERLHSHLL +GL GF++ Sbjct: 61 VCGICTQHHSTCFCLAVESTMKLEIPRRAAVIRNIMLELERLHSHLLAIGLTLEAIGFEN 120 Query: 300 GFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQEL 359 FM FR RE + + E TG R +G+NL+GG+ R++ + + + + ++L Sbjct: 121 LFMLCFRNREIVLDVFERTTGNRVLHGINLVGGVTRNIGPEMAQEIMDFCDTIEKRCRDL 180 Query: 360 VDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEV 419 D+++ + ++ R G+G L + A D+S VGP+ R SG D R D P++ YG L M+ Sbjct: 181 EDMIVHSRTIKDRMKGVGILSKQTALDYSVVGPIARGSGIPYDVRIDAPYLLYGELKMKH 240 Query: 420 HSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGP--LMVEGFTYIPHRFALGFAEAP 477 E+GCDV +R VR+ E++ ++++I + L G P ++ + T +P E P Sbjct: 241 VVEEGCDVWARSIVRVRELFQSIDLIRQLVPMLEGLPDDILAKSKT-MPDGDGFARVEPP 299 Query: 478 RGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 RG+ ++ +++L R + R +TYAN P L +++G ++D I S DPC C DR Sbjct: 300 RGELFYFVRGKKSKELDRVKVRTSTYANGPALIPVIKGCQLADVGPITISYDPCIGCFDR 359 >UniRef50_D1Z1Z0 Putative [NiFe]-hydrogenase large subunit n=1 Tax=Methanocella paludicola SANAE RepID=D1Z1Z0_METPS Length = 530 Score = 232 bits (592), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 151/502 (30%), Positives = 246/502 (49%), Gaps = 27/502 (5%) Query: 75 YYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERR 134 Y+ M++ ++ I +R +D P S+TP A W ERE+ + G+ G P+ Sbjct: 43 YFCFDMKEPSEHTI-LRTYLDRENPVVQSITPITDQADWSERELIEFLGVKVQGHPNPTH 101 Query: 135 LVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVV-------PIGPL 187 L LP +W D M RP + E ++N+V P GP Sbjct: 102 LWLPLNW---------DDMYLNGRPEADHETERINAAPPATTPRDNIVTLPVTAIPYGPY 152 Query: 188 HVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFA 247 H E ++ V+ E + D +L + HR + KL E R Y ++ FL++R+CG C Sbjct: 153 HPAFIESNFLKMSVEDEVVKKVDLKLGFNHRSVIKLMERRDYYKDI-FLAERICGFCNSH 211 Query: 248 HSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRV 307 H+ ++ SVE+ I +P +A++ R +L E+ER+ SHLL +GL TGF + M RV Sbjct: 212 HALSFARSVEDIASIDIPPKAKLARTLLCEMERIQSHLLAVGLIGDLTGFRTMLMHSLRV 271 Query: 308 RETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTP 367 RE E+++G R T+GL IGGIRRD+ + M++ V E D LS Sbjct: 272 REEMQDSLEVVSGQRVTHGLITIGGIRRDITPAQADFILNKLRIMKKSVPEFFDQALSND 331 Query: 368 NMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDV 427 + R +G L E + VGP R SG D R + P+ Y + ++ +E G D Sbjct: 332 VLVGRLENVGVLSLENSVKLGAVGPTARGSGLRIDVRKNSPYEAYEDVDWDIVTENGGDS 391 Query: 428 ISRLKVRINEVYTALNMIDYGLDNLPGGPL-MVEGFTYIPHRFALGFAEAPRGDDI-HWS 485 ++R+KV++ EV ++++ + + + P + +P A+ +E PRG+ + H + Sbjct: 392 LARMKVKMREVLMSMHIAEQCCEKIKTAPAGLATKVNELPCGEAISKSEPPRGELLYHVA 451 Query: 486 MTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVVDVRK 545 G N + R R T+ + +++G V D P IIGS+DPC+SCTDR+ + ++ Sbjct: 452 SNGTNTPDF-VRIRVPTFLTAHIMLRLIQGGWVGDVPAIIGSIDPCFSCTDRVAI--IKN 508 Query: 546 KKSKVVPYKELERYSIERKNSP 567 + VV + L ++ K +P Sbjct: 509 NEKSVVDMRTL----VDHKRTP 526 >UniRef50_Q8U0Z6 Mbh12 membrane bound hydrogenase alpha (NADH dehydrogenase) n=3 Tax=Pyrococcus RepID=Q8U0Z6_PYRFU Length = 427 Score = 231 bits (590), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 135/399 (33%), Positives = 222/399 (55%), Gaps = 21/399 (5%) Query: 182 VPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 241 +P GP+H +EP F + +DGE I++ D +L Y RG++ + R Y ++ +L++R+C Sbjct: 10 IPFGPIHPGLEEPEKFIITLDGERIVNVDVKLGYNLRGVQWIG-MRRNYVQIMYLAERMC 68 Query: 242 GICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGF 301 GIC F+H+ Y +VE GI+VPERA+ IR I+ E+ER+HSHLLNLG+ H G+D+ Sbjct: 69 GICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIVGELERIHSHLLNLGVVGHDIGYDTVL 128 Query: 302 MQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVD 361 + RE M + E ++G R Y + IGG+RRD+ + + + R + ++ D Sbjct: 129 HLTWLARERVMDVLEAVSGNRVNYSMVTIGGVRRDIGEKQKRLILDMIKYYREVLPQIED 188 Query: 362 VLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTR-----ADHPFVGYG-LL 415 V L +E R + + ++A + VGP R SG D+R +P +G + Sbjct: 189 VFLHDSTIEARLRDVAVVPKKLAIEMGAVGPTARGSGIKEDSRWSEQLGVYPDLGIKPVT 248 Query: 416 PMEVHSEQG-CDVISRLKVRINEVYTALNMIDYGLDNLPGGP--------LMVEGFTYIP 466 P +V E+ DV R+ VRI E++ +L+++++ LD +P G ++V + Sbjct: 249 PEDVTGEKARGDVYDRMAVRIGELWMSLDLLEHALDQMPEGKIKTFPKDNILVAKLKLLG 308 Query: 467 HRFALGFAEAPRGDDIHW--SMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLI 524 +G EAPRG+ +H+ G + + RW+ R T+ N T+ L GN ++D + Sbjct: 309 DGEGIGRYEAPRGELVHYVRGQKGRDGPV-RWKPREPTFPNLFTIAKALEGNELADLVVA 367 Query: 525 IGSLDPCYSCTDRMTVVDVRKKKSKVVPYKELERYSIER 563 I S+DPC SCTDR+ + V++ K V+ K+L + SIE+ Sbjct: 368 IASIDPCLSCTDRVAI--VKEGKKVVLTEKDLLKLSIEK 404 >UniRef50_B3VS74 NADH-ubiquinone oxidoreductase chain 49kDa n=4 Tax=Bacteria RepID=B3VS74_DESVM Length = 358 Score = 230 bits (586), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 127/358 (35%), Positives = 196/358 (54%), Gaps = 3/358 (0%) Query: 180 NVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDR 239 ++P GP H EP H +L V+ E I++A L YVHRG+E LA R YN++ ++ +R Sbjct: 4 TIIPFGPQHPVLPEPLHLKLVVEDETIVEAIPALGYVHRGLETLASIR-DYNQMVYIVER 62 Query: 240 VCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDS 299 VCGIC H+ Y +E M ++VP RA+ +R I E+ R+HSHLL LGL GF+S Sbjct: 63 VCGICSCIHAMCYCQGLETMMNVEVPSRAKYLRVIWSELHRIHSHLLWLGLFADGFGFES 122 Query: 300 GFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQEL 359 FMQF+++RE M + E G R +N++GG+RRDL K ++ +E+++L Sbjct: 123 LFMQFWKIRERVMDINEATAGNRVVISVNVVGGVRRDLDKTQQRWILDELDKLEKELRQL 182 Query: 360 VDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEV 419 + +L +++RTVG+G L E A VGP +R SG A+D R + + L E Sbjct: 183 MKTMLDDYTVKKRTVGVGVLTAEQAIQLGAVGPTLRGSGVAQDAR-QLGYAAFDELDFEP 241 Query: 420 HSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRG 479 + D +R KVR E +++++ + LP L + P + E PRG Sbjct: 242 VTSPEGDSWARSKVRFMETLQSMDIVRQAISRLPDSELAAK-VPGKPTGEVVCRVEQPRG 300 Query: 480 DDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + +++ ++ + R R R T+AN P L ML G ++D P+ ++DPC SCT+R Sbjct: 301 ELLYYLKGNGSKNMERVRIRTPTFANIPPLLAMLPGAQLADVPIAALTIDPCISCTER 358 >UniRef50_C5CEV3 NADH-ubiquinone oxidoreductase chain 49kDa n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CEV3_KOSOT Length = 402 Score = 230 bits (586), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 124/366 (33%), Positives = 204/366 (55%), Gaps = 4/366 (1%) Query: 182 VPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 241 +P+GP H +E +F++ +DGE ++D + ++HRG+EK++E +++ F+ +R+C Sbjct: 7 LPVGPFHPLLEEAEYFKIKLDGERVVDIEMETGWMHRGIEKISEEST-FDQSIFVVERIC 65 Query: 242 GICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGF 301 GIC +H A + E+ I+VP +A+ IR+++ E+ER+HSHLL LGLA HF G+D+ + Sbjct: 66 GICSASHPFACINAFEDIGEIEVPLKARYIRSLIGELERVHSHLLWLGLAGHFIGYDTLW 125 Query: 302 MQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVD 361 M ++ RE +++ E++TG R YG IGG+RRD + + +++ + Sbjct: 126 MWAWKYREPVLEVIEMITGNRNHYGTFKIGGVRRDYDVSLNSVVHEKLDFLEKKLTMVAK 185 Query: 362 VLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHS 421 + + P + R G+G L E A + VGP RASG A D R D P+ Y LL V Sbjct: 186 AVANDPVVRSRLCGVGVLTKEEAISYCAVGPTARASGVAIDVRKDEPYAAYDLLDFGVVV 245 Query: 422 EQGCDVISRLKVRINEVYTALNMIDYGLDNL--PGGPLMVEGFTYIPHRFALGFAEAPRG 479 + D+ ++ VRI EV+ ++ MI ++ L GP+ IP +G EAPRG Sbjct: 246 REEGDIFAKTVVRILEVFESIKMIRQIIEKLRKVKGPIY-NDVKEIPAGEGIGRHEAPRG 304 Query: 480 DDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMT 539 + H+ T + + R + RA +Y N PT + G ++D + + S+DPCY CT+R Sbjct: 305 EVFHYIRTDGSNRPVRHKIRAPSYVNIPTYKASCIGENLADVLITLASVDPCYCCTERSV 364 Query: 540 VVDVRK 545 + K Sbjct: 365 RLQTEK 370 >UniRef50_B5Y915 EchE n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y915_COPPD Length = 360 Score = 228 bits (582), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 129/356 (36%), Positives = 194/356 (54%), Gaps = 2/356 (0%) Query: 183 PIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCG 242 P+GP H +E + L ++GE ++DA+ ++ ++HR +EK A R ++ L +R CG Sbjct: 6 PLGPYHPAFEEGEYIELQLEGEMVVDAEIKIGFIHRAIEKSATKRTFIRDLG-LVERTCG 64 Query: 243 ICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFM 302 IC F HS AY +VE A G++VPERA+ IR + E+ER+HSHL+ LG H GFD+ FM Sbjct: 65 ICSFHHSWAYCLAVEKAAGLEVPERAEYIRVLTAELERIHSHLMYLGAMAHKMGFDTLFM 124 Query: 303 QFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDV 362 + RE M M E+L+G R Y +N +GG+RRD+ + Q + + + +L D Sbjct: 125 FTWSGREAVMDMLELLSGNRVNYAINTLGGVRRDVDESISSQIKAALETLEDLGLKLKDT 184 Query: 363 LLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSE 422 ++ RT +G + + A VGP R SG D R P+ Y LL ++ Sbjct: 185 WSKDASILARTKNVGIVSRKEAHLLGVVGPTARGSGIREDLRKTAPYAVYPLLDFDLVVL 244 Query: 423 QGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLM-VEGFTYIPHRFALGFAEAPRGDD 481 DV SR VR+ EV ++ +I LD +P G + + I +G EAPRG+ Sbjct: 245 DDGDVWSRTFVRVLEVLESIKIIRQVLDKMPAGQIKNPKPVLKIEPNDVIGRVEAPRGEL 304 Query: 482 IHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + +T K R + R T N P +M+RG+ ++DAP+I+G +DPC SC DR Sbjct: 305 AYHLITDGTDKPGRLKIRTPTLINLPASEHMMRGSNLADAPVIVGHIDPCMSCMDR 360 >UniRef50_Q609T9 Hydrogenase subunit n=1 Tax=Methylococcus capsulatus RepID=Q609T9_METCA Length = 527 Score = 226 bits (577), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 150/462 (32%), Positives = 227/462 (49%), Gaps = 2/462 (0%) Query: 75 YYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERR 134 + V ++ + + ++ +R + + PS TP P A ER RD+ GL +G PD+RR Sbjct: 67 WVVNALLEKSGDYLLLRTVLPPGRTGLPSHTPHFPGAARPERHTRDLLGLKFIGHPDDRR 126 Query: 135 LVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEP 194 V W + +PLR D Q PA T +Y F + G + N + P+GP+H EP Sbjct: 127 WVRHQAWGEREFPLRPDFPLAGQPPAVTAPDRSYGFASAHGPEVNEI-PVGPVHAGIIEP 185 Query: 195 GHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTT 254 GHFR GE +++ + RL YVH+G+EKLA R + L+ RV G H+ A Sbjct: 186 GHFRFLALGETVLNLEERLGYVHKGIEKLAVGR-DPEGLARLAGRVSGDTTVGHAWAACQ 244 Query: 255 SVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKM 314 ++E+A G+ PERA +RAI +E ER+ +HL ++G C+ T F G QF R+RE ++ Sbjct: 245 AMEHAAGVAPPERALWLRAIFIERERVANHLNDIGAICNDTAFAFGHSQFSRLRELWLRD 304 Query: 315 AEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTV 374 G R + GG+ DL + +R E++EL +L + + R V Sbjct: 305 NLRWFGHRLLMDRIVPGGVAVDLPAEATSAMPAAMAALRSELEELKPILDESTIFQDRVV 364 Query: 375 GIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVR 434 G G L I R+ +G + RA G RD R P Y L ++ + DV +RL VR Sbjct: 365 GAGVLSERIVRELGCLGYVARACGIGRDVRERAPHAPYDRLGVKAVTRGDGDVAARLYVR 424 Query: 435 INEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLY 494 E+ +L+++D L + GPL + T + LG E RG+ + + Sbjct: 425 YEELLASLDILDQCLRRIEPGPLRADWRTPPANAEGLGLVEGWRGEIATYVRFDGAGSIV 484 Query: 495 RWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 R+ R + NWP L ++ GN V D PL S++ YS D Sbjct: 485 RFFPRDPSVFNWPALEKLILGNIVPDFPLCNKSVNGSYSGHD 526 >UniRef50_A3DKH4 NADH-ubiquinone oxidoreductase, chain 49kDa n=2 Tax=Desulfurococcaceae RepID=A3DKH4_STAMF Length = 406 Score = 226 bits (576), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 129/382 (33%), Positives = 201/382 (52%), Gaps = 11/382 (2%) Query: 182 VPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 241 +P+GP H EP + + DGE I++ + Y HRG+EKL E Y ++ F+ RVC Sbjct: 15 IPVGPQHPALHEPVLLKAYADGEEIVNVEINTGYNHRGIEKLGEKNTFYRDI-FIVARVC 73 Query: 242 GICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGF 301 GIC H+ Y ++E + + ERA+ +R + +E ER+HSH+L + GFDS F Sbjct: 74 GICNLVHANCYVRALEEILDMHPNERAKYLRVLAMEFERVHSHMLINAVMAEIIGFDSLF 133 Query: 302 MQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQEL-- 359 M RE MK EI+TG R +IGG+RRD+ D ++ +L + + + + L Sbjct: 134 MNIMLDRENIMKAKEIITGNRVLSDYMMIGGVRRDI---DSVKKDKLLKIIDKVLPRLHY 190 Query: 360 -VDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPME 418 + + + +R V +G + ++ VGP RASG D R + YG +P Sbjct: 191 YKKLFMEDDTILKRLVDVGVIKRSDVTRYTFVGPPARASGVKIDVRVSEKYEVYGDIPFN 250 Query: 419 VHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFA---- 474 + + D +R+ VR +E +LNM Y L++LP V +P RF G A Sbjct: 251 MVTRNEGDSWARMIVRWDEAIESLNMAKYILEHLPNDGNPVPDERRLPRRFPPGEAFTRV 310 Query: 475 EAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSC 534 EAPRG+ ++ M+ K YR + + ++ N Y+ G+T++D P+I+ SLDPC SC Sbjct: 311 EAPRGELTYYVMSDGKPKPYRLKIKTPSFTNIINSGYLYVGHTIADLPVILVSLDPCISC 370 Query: 535 TDRMTVVDVRKKKSKVVPYKEL 556 +R+TV+D+ + VP KEL Sbjct: 371 MERVTVIDLENNTRRKVPIKEL 392 >UniRef50_B9L8U2 Ech Hydrogenase, Subunit n=3 Tax=Epsilonproteobacteria RepID=B9L8U2_NAUPA Length = 361 Score = 221 bits (563), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 122/363 (33%), Positives = 190/363 (52%), Gaps = 13/363 (3%) Query: 181 VVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 240 +VP G HV EP F E I D + YVHRG+EK A TR Y ++ +L RV Sbjct: 6 IVPFGSQHVALPEPVSFLFETQNEVITDVTVNIGYVHRGIEKAAITRFEYTQLPYLVARV 65 Query: 241 CGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG 300 CG+C H+ AYT +E +GI+ ++ +R +++E++R+HSH+L G G+++ Sbjct: 66 CGLCSITHAGAYTHGIEKLLGIETNKKIDYLRMLVVELDRIHSHMLANGHVAEVVGYENL 125 Query: 301 FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELV 360 FMQ FR RE M + E +TG R Y +IGG+ RD K+ R+ ++ ++L+ Sbjct: 126 FMQTFRYREDVMDILERITGNRVQYDYQIIGGVARDFDKETEDFAREKLLTLKANTEKLI 185 Query: 361 DVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVH 420 + + +T G+G + E+A F+ GP+ RASG D RA++ ++ + + ++ Sbjct: 186 EFFENDYTFALKTKGVGTISKEMAEKFNAAGPIARASGLETDARAEYDYLPFEEVGYKLQ 245 Query: 421 SEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMV------EGFTYIPHRFALGFA 474 + DV +R VR +E+ ++ M LD +P G V +G T++ Sbjct: 246 TRTEGDVWARNMVRFDEIMNSIEMCLNILDGIPEGEHRVKVKGRPDGETFVR-------V 298 Query: 475 EAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSC 534 EAPRG+ ++ + L R R R TYAN P L+ + G SDA I+ S DPC SC Sbjct: 299 EAPRGECFYYLKGNKTKVLERVRIRVPTYANIPVLKELFVGEKYSDAQAIVLSFDPCMSC 358 Query: 535 TDR 537 T R Sbjct: 359 TAR 361 >UniRef50_D2LAG1 NADH-ubiquinone oxidoreductase chain 49kDa n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2LAG1_9DELT Length = 409 Score = 220 bits (561), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 139/408 (34%), Positives = 205/408 (50%), Gaps = 52/408 (12%) Query: 180 NVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDR 239 ++P GP H EP H +L ++ E +I+A L YVHRG+E+L E R +N++ + +R Sbjct: 4 TILPFGPQHPVLPEPLHLKLTIENETVIEALPTLGYVHRGLERLCEIR-DFNQMIQIVER 62 Query: 240 VCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDS 299 VCGIC H+ Y VE MG++VP RA+ +R I E+ R+HSHLL LGL GF+S Sbjct: 63 VCGICSCLHALCYCEGVEQIMGVEVPRRAKYLRTIWGELHRMHSHLLWLGLFADAFGFES 122 Query: 300 GFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQEL 359 FMQF+RVRE M + E G R +N+IGG+RRDL + + Q +E+++L Sbjct: 123 LFMQFWRVRERIMDIMEATCGNRVVVSVNVIGGVRRDLSPEQCLWIEQQLALSEKEIKQL 182 Query: 360 VDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEV 419 +L+ +++RTVGIG L E A VGPM+R SG A+D R + + L E Sbjct: 183 QTTILNDYTVKKRTVGIGVLSKEKAYQLGAVGPMLRGSGWAQDARQTG-YAAFDELGFEP 241 Query: 420 HSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGG--PLMVEG---------------- 461 E G D +R VR E +++++ + +P G + VEG Sbjct: 242 VVEYGGDSYARCAVRFRETLQSIDIVRLAIARMPAGETSVNVEGAMEDDTPRPVVAGERR 301 Query: 462 -------------FTYIPH---RFALGFAEA-----PRGD----------DIHWSMTGDN 490 T P G A P G+ ++ + + G+ Sbjct: 302 DIMQAYNRDKHHKITAAPPPNLDLPTGLVAAKVKGKPDGEAVTRVEQPRGELMYYIKGNG 361 Query: 491 QK-LYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 K + R R R T+AN P L +L G ++D P+I+ S+DPC SCT+R Sbjct: 362 SKNMERVRIRTPTFANIPPLLAILPGCELADVPVIVLSIDPCISCTER 409 >UniRef50_Q0F384 Hydrogenase subunit n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F384_9PROT Length = 532 Score = 212 bits (540), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 140/466 (30%), Positives = 226/466 (48%), Gaps = 6/466 (1%) Query: 72 YAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPD 131 +A+Y ++ +R + A PE PS++ AA ER ++DM+G+ +PD Sbjct: 71 HAMYAYMAFAHPEHRHTLLRTPLAAENPELPSISGHYIAACRMERHMQDMFGIHITDIPD 130 Query: 132 ERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAE-TYEFINELGDKKNNVVPIGPLHVT 190 R + + WP E YPLR +D+ RP +A Y+++ G + +P+GP+H Sbjct: 131 PRPWIKHEHWPREAYPLR---VDFDARPPLLAEAHGDYDYVRS-GSEGVYEIPVGPVHAG 186 Query: 191 SDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHST 250 EPGHFR GE+I++ + RL YVH+G+E+ +++ E ++ R+ G AH+ Sbjct: 187 IIEPGHFRFLAVGEHILNMEERLGYVHKGIERAMQSKSA-EEGLKVASRISGDSTVAHAW 245 Query: 251 AYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRET 310 A+ + E A I VP RA IRAIL E ER+ +H+ ++G C+ F Q R+RE Sbjct: 246 AFAQACEYAGQIDVPRRASFIRAILCERERIANHIGDIGAVCNDAAFAFMLHQMHRLRED 305 Query: 311 SMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNME 370 ++ L G R + GG+ DL + + R+ + EV+ L + P+++ Sbjct: 306 MARLHLELFGHRLLMNTLIPGGVLVDLGERAIGLLREQTLAIANEVEHLRAIYADHPSIQ 365 Query: 371 QRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISR 430 R +G G + E A+D +G + RASGH D R + + Y L + V + DV +R Sbjct: 366 GRVIGSGMVPVEDAQDIGLLGYVGRASGHYPDERIEEAYAPYDELEVNVPQGKLGDVATR 425 Query: 431 LKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDN 490 + VR E+ + +I L+ +P GP++ P E RG+ W G+ Sbjct: 426 VWVRFEEIAESSRLISELLEKMPEGPIVANWLPPEPGVSGFAAIEGWRGEIAAWVRFGEG 485 Query: 491 QKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 ++ R R + NW L +R V D PL S + YS D Sbjct: 486 GQIDRCFVRDPSVINWLGLELAVREVPVPDFPLNNKSFNCSYSGND 531 >UniRef50_C7N626 Ech hydrogenase subunit E n=25 Tax=cellular organisms RepID=C7N626_SLAHD Length = 362 Score = 208 bits (529), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 126/366 (34%), Positives = 191/366 (52%), Gaps = 12/366 (3%) Query: 178 KNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLS 237 K V+P GP H EP H L V E +I+ ++ ++HRG+EKL E + ++ +++ Sbjct: 3 KATVIPFGPQHPVLPEPLHLDLVVQDEKVIEVIPQIGFIHRGLEKLVEKK-DIHQFIYVA 61 Query: 238 DRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGF 297 +R+CGIC F HS Y +VE MG++VP RA+ +R IL E+ R+HSHLL LGLA GF Sbjct: 62 ERICGICSFGHSLGYAETVEKLMGVEVPRRAEYLRVILHELSRIHSHLLWLGLAADAFGF 121 Query: 298 DSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQ 357 ++ FM +R+RE + + E TG R IGG+ RD+ +++ Q MR E Sbjct: 122 EALFMHSWRIRERVLDIFEATTGGRVILSAVQIGGVIRDIDDEELKQISATLDGMRSEYA 181 Query: 358 ELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVG---YGL 414 EL+ L+ ++ R V +GRL A D VGP RAS D R +G YG Sbjct: 182 ELMATFLNDTSVRSRLVNVGRLTQTQAEDLCMVGPFARASNVKFDCR----MLGNGAYGE 237 Query: 415 LP--MEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRF-AL 471 L + ++G D +R++VR EV ++++I + +P + P A Sbjct: 238 LENFQPILDDEG-DCYARVRVRCKEVIQSIDIIQELIAKIPHDGIGERSKLTPPDGAQAA 296 Query: 472 GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPC 531 E PRG+ +++ ++ L R R R T N L G ++D P I+ ++DPC Sbjct: 297 NVLEQPRGECYYYARGNGSKNLERMRMRTPTSQNLAGLVAACEGAELADVPNILLTIDPC 356 Query: 532 YSCTDR 537 SCT+R Sbjct: 357 ISCTER 362 >UniRef50_D1YVS8 Ech hydrogenase subunit E n=1 Tax=Methanocella paludicola SANAE RepID=D1YVS8_METPS Length = 360 Score = 207 bits (528), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 118/360 (32%), Positives = 193/360 (53%), Gaps = 4/360 (1%) Query: 180 NVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDR 239 + GP H EP +L DGE I D D YVHRG+EK E YN+ +LS+R Sbjct: 3 TTIQFGPQHPVWIEPLRLKLTTDGELIKDVDLEAGYVHRGLEKKFE--WDYNKAAYLSER 60 Query: 240 VCGICGFAHSTAYTTSVENAM-GIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFD 298 VC IC HST + VE M G+++P RA +IR I+LE+ERLHSH L +GL GF+ Sbjct: 61 VCAICTQHHSTCFCLGVEGTMAGLELPRRAAIIRTIMLELERLHSHFLAIGLTLEAIGFE 120 Query: 299 SGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQE 358 + FM FR RE + + E TG R +G+N++GG+ R++ + + + + E Sbjct: 121 NMFMLCFRHREQVLDVFERTTGNRVLHGINIVGGVTRNIGPEMAKEILDFCDDIEKRAHE 180 Query: 359 LVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPME 418 + +++S+ ++QR G+G + ++A++ VGP+ R S D R P + Y + + Sbjct: 181 IERIIVSSYTIKQRMQGVGVMTEKMAKELGVVGPVARGSNVPYDVRHAAPHLLYREVKVT 240 Query: 419 VHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGP-LMVEGFTYIPHRFALGFAEAP 477 E+ D +R VR+ E++ ++++I + L G P + +P + EAP Sbjct: 241 PIVEKDGDCWARSLVRVRELFQSIDLIRQLVPLLDGTPDELFAKSKAMPEGENIARVEAP 300 Query: 478 RGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 RG+ ++ +++L R + R +TY N + +++G+ ++D LI + DPC C DR Sbjct: 301 RGELFYYVRGKKSKELDRVKVRTSTYGNGLGIAPLIKGSHIADVGLITITFDPCIGCFDR 360 >UniRef50_Q3ZW31 Hydrogenase, group 4, HycE subunit n=3 Tax=Dehalococcoides RepID=Q3ZW31_DEHSC Length = 526 Score = 201 bits (511), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 147/485 (30%), Positives = 238/485 (49%), Gaps = 24/485 (4%) Query: 60 LFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVR 119 LFG + + ++ Y+ + + +R A+ P S+ P+A + ERE+R Sbjct: 57 LFGVEGFRGYQGLSLLYIFEKRNYSGTLVIIR---RADSP-VSSIAAIFPSACYFEREIR 112 Query: 120 DMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDY-RQRPAPTTDAETYEFINELGDKK 178 D YG D RRL L + +P +PL + PA + Y F G+ Sbjct: 113 DGYGCEFENAFDRRRLFLHETYPANFHPLANSFKNQPLSLPAGVENEALYPFKKISGEGV 172 Query: 179 NNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF--- 235 V +GP+H EPGHFR GE I++ + RLFY HRG+EKLA MG ++ F Sbjct: 173 YEV-GVGPVHAGIIEPGHFRFSAIGEPILNLEVRLFYTHRGLEKLA---MG-KDIDFGLK 227 Query: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 295 +++ + G A++ AY+++VE+ + P RA+ +R ILLE+ERL+SHL +L Sbjct: 228 IAEGISGDESAANTYAYSSAVEHICSSRPPRRAEQLRLILLEMERLYSHLADLSGMLTDV 287 Query: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 355 G+ G +RE M+ + LTG+R G+ GG+ +D+ + + + Sbjct: 288 GYPVGAASLSALREELMRWNKRLTGSRFLKGIIAPGGLLKDIPGELITELADYLYAFEGR 347 Query: 356 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415 E V+ L+ ++ R G ++ + + G RASG A DTR + P+ Y L Sbjct: 348 FSEQVEKALAKTSVVDRFETTGIVNNRLLIPLNITGVTARASGEAIDTRLNQPYGFYPEL 407 Query: 416 PMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHR----FAL 471 ++ DV++R +VR++EV T+L +I L + G IP + ++L Sbjct: 408 SFKLPVLPEGDVMARFRVRLSEVQTSLGLI------LKTAAKLSAGEYAIPLKPVNGYSL 461 Query: 472 GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPC 531 E+PRG +HW D K+ R++ R A+Y NW + + + G+ + D PLI SL+ Sbjct: 462 VLVESPRGQSLHWLWLRDG-KIERYKVRTASYCNWQAIEHAVLGDIIPDFPLINKSLNLS 520 Query: 532 YSCTD 536 Y+ TD Sbjct: 521 YAGTD 525 >UniRef50_B2HHH7 Formate hydrogenase HycE n=3 Tax=Actinomycetales RepID=B2HHH7_MYCMM Length = 498 Score = 199 bits (507), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 145/470 (30%), Positives = 227/470 (48%), Gaps = 23/470 (4%) Query: 74 VYYVLSMEKGTKCWITVRVEVDANKPEYPSVTP-RVPAAVWGEREVRDMYGLIPVGLPDE 132 VY +++ + + +T+R A P PS+ +PA + ERE+ D+YG+ PVG P Sbjct: 44 VYLLVAGQPDRRVELTLRT--GAANPSVPSLAELSIPAGRF-EREMMDLYGISPVGHPQP 100 Query: 133 RRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSD 192 RRLV WP + +P+R+D+ D P P + F+ G + P+GP+H Sbjct: 101 RRLVRHAHWPQDWHPMRRDAGD----PPPFDAVGRFPFVTVEGPGVYEI-PVGPVHAGLI 155 Query: 193 EPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETR--MGYNEVTFLSDRVCGICGFAHST 250 EPGHFR V GE+I+ RL++VHRG+EKL E R +G E L++R+ G AHS Sbjct: 156 EPGHFRFSVIGESILRLKARLWFVHRGVEKLFEGRNALGAREAVELAERISGDSSAAHSL 215 Query: 251 AYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRET 310 A+ +VE+A+G+ VPE +RA+L+E+ERL++H+ +LG + GF +RE Sbjct: 216 AHCLAVEDALGLDVPEPVHRLRALLVELERLYNHVTDLGALANDVGFALANAHAQGIRER 275 Query: 311 SMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNME 370 +++ +TG R GG+ L D +L + EV E+ ++ L + Sbjct: 276 VLRINRRVTGHRLLRAAMAPGGVVLQELPDPA----EL-HAVAAEVAEISELTLRNSVVY 330 Query: 371 QRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISR 430 R L E AR +G + RASG A D R DHP LP+ + G DV++R Sbjct: 331 DRFAETAVLHSEDARALGCLGYVARASGIATDARLDHP---TAELPVTAVAAGGGDVLAR 387 Query: 431 LKVRINEVYTALNMIDYGLDNLPG----GPLMVEGFTYIPHRFALGFAEAPRGDDIHWSM 486 +R +E ++ + + ++N G P +G E RG +H Sbjct: 388 YTIRRDEFAASVALACHLVENHHGRTRFAPPPAANGARSAVTSGVGIVEGWRGAVLHRVE 447 Query: 487 TGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 ++ R + ++ NWP L + V D PL S + Y+ D Sbjct: 448 VDGAGRITRCKIVDPSWFNWPALPVAMADTIVPDFPLANKSFNLSYAGND 497 >UniRef50_A6DAC0 Carbon monoxide-induced hydrogenase, large subunit n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DAC0_9PROT Length = 358 Score = 199 bits (505), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 122/360 (33%), Positives = 184/360 (51%), Gaps = 9/360 (2%) Query: 182 VPIGPLHVTSDEPGHFRLFVDGENII-DADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 240 + IGP + +EP +F+L VD I+ D + +VHRG+E L + + + L++R+ Sbjct: 4 INIGPFLASLEEPIYFKLDVDDNEIVRDVEIVNGFVHRGLEALTMQKNFFQNL-ILTERL 62 Query: 241 CGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG 300 C +C H +Y ++E I+V +RA +R I EV+R+ S++ NL + H Sbjct: 63 CALCSNNHPFSYCLALEKIAEIEVSKRADYLRVIADEVKRIASNMFNLSMLAHLVHDYEL 122 Query: 301 FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELV 360 RE + E + G R IGG++ +L K Q + +++ LV Sbjct: 123 MRDTMDTREIMQDVKETIWGNRMDLSAVTIGGVKYNLDK----QKSEFILNSLEKIEPLV 178 Query: 361 DVLLST-PNMEQ--RTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPM 417 D L N E+ +T GIG L + A +F GP+ R SG D R P+ Y L + Sbjct: 179 DKLFERFCNSEKIKKTKGIGVLTKQQALEFGVSGPVARGSGINNDVRVKAPYAAYDELEV 238 Query: 418 EVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAP 477 V E DV SR+KVR ++ A+ ++ ++NLP GP+ +E +IP A EAP Sbjct: 239 RVDLESDGDVYSRMKVRWYDIKNAIKILKNAINNLPSGPIHLEKRPHIPAGEATVRTEAP 298 Query: 478 RGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 RG+ I++ T QK R R R TY N+ L M++GN SD LI+ S+DPC SCTDR Sbjct: 299 RGELIYYVKTDGGQKPKRMRWRVPTYMNFQALEEMIKGNRASDVVLILNSIDPCVSCTDR 358 >UniRef50_D2LH96 NADH-ubiquinone oxidoreductase chain 49kDa n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LH96_RHOVA Length = 504 Score = 197 bits (502), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 135/452 (29%), Positives = 212/452 (46%), Gaps = 23/452 (5%) Query: 85 KCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDE 144 C V + + A YPSV P A+ ER +RD+YG IP G+PDERR + WP Sbjct: 75 NCRAIVSLSLKAGA--YPSVGLHHPPALRLERAMRDLYGAIPDGIPDERRWLDHGVWPGR 132 Query: 145 LYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGE 204 P Y F+ G+ + + P+GP+H EPGHFR +GE Sbjct: 133 -----------EHEPG-------YHFLPVEGNGLHQI-PVGPVHAGIIEPGHFRFTANGE 173 Query: 205 NIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQV 264 + + RL YVH+G+E LA+ + L+ R+ G A+S A++ +VE A+G ++ Sbjct: 174 TVARLEARLGYVHKGVEALAQG-ASIEKAAKLAARMSGDSTVAYSFAFSRAVEAALGWEI 232 Query: 265 PERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKT 324 P RAQ++R ++ E+ERL H+ ++G C+ + +RE ++ L G R Sbjct: 233 PPRAQILRGVMAELERLSHHVSDVGGICNDAAVAVLLARCSLIREDILRTQAALFGHRMM 292 Query: 325 YGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIA 384 + GG+ RD+ L +++ +V +P+++ RT G G + + Sbjct: 293 MDAIVPGGVARDIDAAGATAILALLERIEIGFHRVVRAYDQSPSIQNRTHGTGIVQLDFI 352 Query: 385 RDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNM 444 R F+ G + RA G A D RA P+ Y + +V + + DV +R+ +RI E+ + + Sbjct: 353 RQFAAGGFVGRAGGRAFDARASFPYPPYNAVAFKVPTREESDVDARIWIRIEEIAESAGI 412 Query: 445 IDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 504 I L L GP+ + P A EA RGD D ++ R A++ Sbjct: 413 IRQLLAKLEDGPIHAAPPPFQPGAGA-ALVEAFRGDLFLAVRIEDESRIAHMHARDASWF 471 Query: 505 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 WP L + GN V+D PL S + YS D Sbjct: 472 QWPLLETAIDGNIVADFPLCNKSFNCSYSGVD 503 >UniRef50_Q5LH50 NADH-quinone oxidoreductase subunit C/D n=34 Tax=Bacteroidetes RepID=NUOCD_BACFN Length = 530 Score = 195 bits (496), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 146/482 (30%), Positives = 224/482 (46%), Gaps = 21/482 (4%) Query: 73 AVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDE 132 VY++ S G + I + PE PSV+ AA + EREV D YG++ +G PD Sbjct: 53 VVYHLESTVTGERIAIKTSTN-NRETPEIPSVSDIWKAADFNEREVFDYYGIVFIGHPDM 111 Query: 133 RRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELG---------------DK 177 RRL L +DW +P+RKD+ + P + ETY+ E+ D Sbjct: 112 RRLYLRNDWVG--HPMRKDNNPEKDNPLRMDNEETYDTTREIELNPDGTYQTQENVIFDD 169 Query: 178 KNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLS 237 + VV IGP H + FR+ ++GE I D Y+HRG+EK+ E+ + Y + L+ Sbjct: 170 REYVVNIGPQHPATHGVMRFRVSLEGETIKKLDANCGYIHRGIEKMNES-LTYPQTLALT 228 Query: 238 DRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGF 297 DR+ + + A +E AMGI+V ER + IR I+ E++R+ SHLL G Sbjct: 229 DRLDYLGAHQNRHALCMCIEKAMGIEVSERVKYIRTIMDELQRIDSHLLFYSCLAMDLGA 288 Query: 298 DSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQ 357 + F FR RE + M E G R N IGG++ DL + + + ++ +R + Sbjct: 289 LTAFFYGFRDREMILDMFEETCGGRLIMNYNTIGGVQADLHPNFIPRVKKFIPYLRGIIH 348 Query: 358 ELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPM 417 E DV QR G+G L E A F G RASG A D R P+ Y + Sbjct: 349 EYHDVFTGNVIARQRLKGVGVLSREDAISFGCTGGTGRASGWACDVRKRMPYGVYDKVDF 408 Query: 418 EVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLM--VEGFTYIPHRFALGFAE 475 + D +R VR++E+ +LN+I+ +DN+P GP+ ++ +P E Sbjct: 409 KEIVYTEGDSFARYMVRMDEIMESLNIIEQLIDNIPEGPIQEKMKPIIRVPEGSYYTAVE 468 Query: 476 APRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCT 535 RG+ + + ++ YR R+ + + RG ++D I G+LD Sbjct: 469 GSRGEFGVFLESHGDKTPYRLHYRSTGLPLVSAVDTICRGAKIADLIAIGGTLDYVVPDI 528 Query: 536 DR 537 DR Sbjct: 529 DR 530 >UniRef50_Q58433 Uncharacterized protein MJ1027 n=12 Tax=Methanococcales RepID=Y1027_METJA Length = 377 Score = 192 bits (489), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 124/368 (33%), Positives = 189/368 (51%), Gaps = 5/368 (1%) Query: 182 VPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 241 + IGP+H T EP RLF++ E I +A+ + +RG+E + E + +++ LS+++C Sbjct: 10 IAIGPVHPTMLEPHRLRLFIEDEIIKEAELVIGVNYRGIELIMEG-LPPEKISILSEKIC 68 Query: 242 GICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGF 301 GIC H T E I+VPERA+ IRAI+ E+ERLHSH+L G A GF++ Sbjct: 69 GICSHIHVWCNVTVTERGCDIEVPERAEYIRAIVEELERLHSHMLLFGHAFEVLGFETMA 128 Query: 302 MQFFRVRETSMKMAEILTGARKTYGLNLIGGIR-RDLLKDDMIQT-RQLAQQMRREVQEL 359 + F +RE M++ +TG R Y +IGGIR R +K+ I + ++ +++L Sbjct: 129 FRAFMIREPIMQILGEITGGRAQYSCPIIGGIRPRCNIKESKIPALLERLEKFEENLKKL 188 Query: 360 VDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEV 419 ++ ++ P + R +G LD + A+ +GP R SG D R Y E Sbjct: 189 LERTVNDPMIMSRIKDVGVLDKKTAKKLHALGPTARGSGIHSDMRKMGQVPVYDNFEFEE 248 Query: 420 HSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFAL--GFAEAP 477 DV SRL VR E + ++ +I GL +LP + Y F + EA Sbjct: 249 IVFDDGDVFSRLAVRFYECFESVKIIRQGLKDLPNLDKRIYNPNYELKEFKPIDVYNEAQ 308 Query: 478 RGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 RG + +N ++ + + R T N + +L G+ VSDA LII S DPC++CTDR Sbjct: 309 RGQVYYSYGLDENGRVRQVKIRTPTATNLACMEAILPGHHVSDAELIIASCDPCFTCTDR 368 Query: 538 MTVVDVRK 545 M VV K Sbjct: 369 MIVVKENK 376 >UniRef50_B6AS24 Putative NADH-ubiquinone oxidoreductase, 49 kDa subunit n=2 Tax=Leptospirillum sp. Group II RepID=B6AS24_9BACT Length = 499 Score = 192 bits (487), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 146/485 (30%), Positives = 216/485 (44%), Gaps = 19/485 (3%) Query: 52 KQGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAA 111 +GG L+G D + +V + G +R V +PS+T P A Sbjct: 33 SRGGRFVSLWGTD-------HPEGFVYAALAGPDGLFVLRSPVSKESGTFPSLTALFPLA 85 Query: 112 VWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFI 171 ER VRD+YG IP GL D R + DD + R P D E + Sbjct: 86 SRPERAVRDVYGWIPEGLSDTRPWIRQDDHGGHGSGKERSPEGGRDYPFVRVDGEG---V 142 Query: 172 NELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYN 231 +E +P+GP+H EPGHFR V GE ++ + RL Y H+G+ L R Sbjct: 143 HE--------IPVGPVHAGIIEPGHFRFQVVGEKVLRMEERLGYTHKGIRGLLAHRP-VG 193 Query: 232 EVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLA 291 +VT LS R+ G A A+ +VE A PERA +RAILLE ER+ +HL +LG Sbjct: 194 DVTRLSSRISGDSAVAFQWAWAQAVECATQTSPPERAVWLRAILLERERIANHLGDLGAL 253 Query: 292 CHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQ 351 + GF G +QF R++E ++ + G R GG+ D + + R + Sbjct: 254 GNDAGFAFGLVQFGRLKEDLLRTNGQIFGHRYLMDTICPGGVAVDPGDGALSRLRSELPR 313 Query: 352 MRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVG 411 ++ E+ L + ++ R G G LDP +A + G + RASG D R DHP Sbjct: 314 LQEEIHVLKTIYDEHGGLQDRFAGTGVLDPLLAGAWGLGGVVGRASGQLLDLRHDHPVRP 373 Query: 412 YGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFAL 471 Y + + V + DV +R++VR E+ +L ++ L + P GP P Sbjct: 374 YDIERVPVALAKRGDVGARVQVRFQEIRHSLAFLESVLASFPPGPARRGLVCRSPKAEGF 433 Query: 472 GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPC 531 G+ E RG+ + W + + ++ WP L + GN V+D PLI S + Sbjct: 434 GWIEGFRGEVLAWVRLDRDGNVEDAHFHDPSWLLWPALERAVPGNLVADFPLINKSFNLS 493 Query: 532 YSCTD 536 YS D Sbjct: 494 YSGHD 498 >UniRef50_Q2WAW4 Ni,Fe-hydrogenase III large subunit n=11 Tax=Alphaproteobacteria RepID=Q2WAW4_MAGSA Length = 505 Score = 191 bits (485), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 126/430 (29%), Positives = 206/430 (47%), Gaps = 15/430 (3%) Query: 109 PAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETY 168 P + ER + D++GL PVGL D R + WP + PL M AP+ + + Y Sbjct: 88 PGVIRIERAIHDVWGLTPVGLEDRRHWLDHGRWPSRM-PLAAQPM------APSAEPDRY 140 Query: 169 EFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRM 228 F+ +GD + + P+GP+H EPGHFR GE ++ + RL Y H+G+E L + Sbjct: 141 PFLQAVGDGLHQI-PVGPVHAGVIEPGHFRFHCQGEAVVRLEQRLGYQHKGIEGLLQG-A 198 Query: 229 GYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNL 288 ++ + RV G A+S A+ +VE A G +VP RA +R ++ E+ER+ +H+ ++ Sbjct: 199 PLDKAARIVARVSGDSTVAYSLAFARAVEAATGCEVPARAHWLRGVMAEMERVANHVFDI 258 Query: 289 GLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQL 348 G C+ F +RE ++ ++L G R + GG+ DL + + + L Sbjct: 259 GAVCNDAAFAVMLSHMGVLREKVLRANDVLFGHRLNMDRIVPGGVSLDLSDEGVEALKHL 318 Query: 349 AQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHP 408 + +++ + +TP++ RTV G + + F G + RASG D R Sbjct: 319 LYGFGKLLEQGYQLYENTPSLSDRTVSTGIVQTSLIHRFGAGGFVGRASGRGHDARETPS 378 Query: 409 FVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHR 468 + Y L M V DV +R+ VR E +L++I+ L +P G + V +P Sbjct: 379 YPPYDKLDMTVPVLTEGDVNARVLVRFAEAKESLHLINRMLHEMPEGAVRVP----LPEV 434 Query: 469 F--ALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIG 526 +G AE+ RG+ + W G + + R ++ WP L + GN V+D PL Sbjct: 435 AGEGMGVAESFRGEVVVWLRLGADHVVERCHPHDPSWFQWPLLEAAIEGNIVADFPLCNK 494 Query: 527 SLDPCYSCTD 536 S + YS D Sbjct: 495 SFNCSYSGHD 504 >UniRef50_C8XAS3 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XAS3_NAKMY Length = 506 Score = 191 bits (484), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 159/492 (32%), Positives = 236/492 (47%), Gaps = 21/492 (4%) Query: 53 QGGWLSVLFGNDE-RKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAA 111 QG ++++ G+D+ + G V YV + GT + + + D P PS+ A Sbjct: 27 QGYRIALMAGHDDPAERGGTLRVVYVFT-RAGTDQRVELTLRCDPADPHLPSLAGLSFPA 85 Query: 112 VWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAE-TYEF 170 ERE+RD++G++P G P RLV WP +P+R+D+ P P D + Y F Sbjct: 86 GRFEREIRDLFGIVPDGHPMPSRLVRHFHWPRGWHPMRRDA----GPPPPFGDVDGPYPF 141 Query: 171 INELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGY 230 G + P+GP+H PGHFR V GE +++ RL++VHRG+EKL R Sbjct: 142 RTVEGPGVYEI-PVGPVHAGMIGPGHFRFSVVGETVLNLKARLWFVHRGLEKLFAGRAVA 200 Query: 231 NEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGL 290 V L++RV G H+ AY +VE+A G+ + AQ IRAILLE+ERL++H+ ++G Sbjct: 201 AGVE-LAERVSGDTTVGHALAYVRAVEDASGVTLDPAAQRIRAILLELERLYNHIGDIGA 259 Query: 291 ACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQ 350 + G R+RE +++ + +TG R G ++GG+R +L D +LA Sbjct: 260 LANDVGHGILNNHALRIRERLLRINDAVTGHRLMRGAIVVGGVRVRVLPD----AGELA- 314 Query: 351 QMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFV 410 + + E+VD+ L + R G L A D +G + RASG A D R DHP Sbjct: 315 AVAADCAEVVDLALGHSVVRDRFTGTAMLSHRQAVDLGTLGYVARASGVAVDARFDHPVP 374 Query: 411 GYGLLPME---VHSEQGCDVISRLKVRINEVYTALNMIDYGLDNL-PGGPLMVEGFTYIP 466 G P E H G DV SR VR E+ +++ MI + P V G T Sbjct: 375 GLVYDPAERLSTHPTDG-DVASRFLVRAQEIQSSVRMIAALAGQVDTTAPREVGGSTSSA 433 Query: 467 H--RFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLI 524 R +G E RG +H + +L R R ++ NWP L + V D PL Sbjct: 434 AGVRAGVGIVEGWRGTIVHRVELDADGRLTRVRIVDPSFFNWPALPLAMADTIVPDFPLA 493 Query: 525 IGSLDPCYSCTD 536 S + Y+ D Sbjct: 494 NKSFNLSYAGND 505 >UniRef50_Q3A825 NADH-quinone oxidoreductase subunit B/C/D n=103 Tax=cellular organisms RepID=NUBCD_PELCD Length = 794 Score = 190 bits (483), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 142/502 (28%), Positives = 234/502 (46%), Gaps = 43/502 (8%) Query: 74 VYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDER 133 VY++LS E+ ++ V+ + ++ E PS+T PAA W ERE DM+G+ G PD R Sbjct: 298 VYHLLSFERAG--YLRVKAPLRNDRAEVPSITGLWPAANWYEREAFDMFGVRFAGHPDLR 355 Query: 134 RLVLPDDWPDELYPLRKD-----------SMDYRQRPAPTTDAETYEFINELGDKKNNVV 182 R+++P+ W + +PLRK + D P + + + ++ +++ Sbjct: 356 RILMPEGW--QGHPLRKSHPSRATDMPPFTRDTATTMVPPEGSHFFSNRAPVDNQSLSIL 413 Query: 183 PIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCG 242 +GP H + L + GE I+D D + Y HRG EK+AE R +N+ +DR+ Sbjct: 414 NLGPQHPGTHGILRVILQLAGEEIVDLDSEIGYHHRGAEKIAE-RQHWNQYIPYTDRIDY 472 Query: 243 ICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFM 302 + G ++ AY SVE G++VP RA+ IR +L E+ R+ SHL+ LG H G + Sbjct: 473 LAGSLNNLAYLYSVETLCGVEVPPRARYIRVLLSELFRIASHLVWLGTFAHDVGAMTPVF 532 Query: 303 QFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDV 362 F RE + E++TG R IGG+ DL + + + E + Sbjct: 533 YAFDSREKIFDIIELITGGRMHPAWFRIGGVPDDLPDGWLAAVEAFTRDFEARIDEFDRL 592 Query: 363 LLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSE 422 L P RT GIG + + A + GP +RA+G A D R P+ GY +V + Sbjct: 593 LTGGPIFRARTEGIGTVSRQQAVELGFSGPNLRATGLAWDLRKSMPYGGYDEFDFDVVTA 652 Query: 423 QGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTY--------------IPHR 468 G D +R VR+ E+ +L ++ + +P G + + + Y + H Sbjct: 653 GGGDCFARYLVRLGELRQSLRIVRQAAEGMPQGRWISDQYRYAYPKREDGLQDIESLIHH 712 Query: 469 F---ALGFA----------EAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRG 515 F + G A E+ +G+ +++++ YR R R ++ + L + RG Sbjct: 713 FLHVSRGPAAPRGECYRAIESSKGECGYYAVSDGGTGAYRLRIRTPSFPHLQALPQLSRG 772 Query: 516 NTVSDAPLIIGSLDPCYSCTDR 537 V+D I+GSLD + DR Sbjct: 773 RLVADVITILGSLDYVLADLDR 794 >UniRef50_B3DZF5 Formate hydrogenlyase subunit 5 n=8 Tax=Bacteria RepID=B3DZF5_METI4 Length = 535 Score = 190 bits (482), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 130/437 (29%), Positives = 217/437 (49%), Gaps = 12/437 (2%) Query: 100 EYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRP 159 ++PSV P+A ER + D++GL G D R + W +P+ DS Sbjct: 110 KFPSVAVAYPSAARLERALYDLFGLQAQGSLDSRPWLDHGKWGVR-FPM-GDSY------ 161 Query: 160 APTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRG 219 P + + Y F G+ + V P+GP+H EPGHFR + GE ++ + RL Y H+G Sbjct: 162 -PDGEEKLYSFFPARGESLHQV-PVGPVHAGIIEPGHFRFTMSGEIVVRMEERLGYTHKG 219 Query: 220 MEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVE 279 +E L + ++ ++ R+ G A++ Y +VE A+GI P RA+ IRA++ E+E Sbjct: 220 IESLF-SGASIDKGMEIAGRISGDSTVAYAYGYALAVEEALGISPPPRAEWIRALMAELE 278 Query: 280 RLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLK 339 R+ +H ++G C+ F + +RE ++ A+ G R ++GG++ DL Sbjct: 279 RMANHFGDVGAICNDAAFPRILSRCALLREKILRCAQSCFGHRLMRDKIVVGGVKEDLNA 338 Query: 340 DDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGH 399 + + + R+L + ++ EV L D S +++ RTVG G LD +A F G + RASG Sbjct: 339 EGLSRIRELLETIKEEVVCLKDFYDSKNSLQDRTVGTGVLDRRLAELFGAGGFIGRASGR 398 Query: 400 ARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMV 459 D+R + Y L EV + DV +R+ +RI E+ ++ +++ L+ +P G + Sbjct: 399 NFDSRKAFAYKPYDSLSFEVPVLEDGDVNARVWIRILEIEQSVKLLEQILEGMPPGSICA 458 Query: 460 EGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVS 519 E L E+ RGD + W + N K+ R R ++ WP L ++ G ++ Sbjct: 459 ERIGGEGSGKGLSVVESFRGDILTW-IEIYNGKIIRCHPRDPSWFQWPLLEKVIVGGVIA 517 Query: 520 DAPLIIGSLDPCYSCTD 536 D PL S + YS D Sbjct: 518 DFPLCNKSFNCSYSGHD 534 >UniRef50_D2MJM9 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MJM9_9BACT Length = 583 Score = 189 bits (481), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 165/583 (28%), Positives = 260/583 (44%), Gaps = 60/583 (10%) Query: 11 LAALNEAFPGVVLD-HAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLS----VLFGNDE 65 L L+E FP VL + L+ V+ L EV FL+ G + + Sbjct: 5 LETLHERFPEAVLSVREDPQRGDLSAQVRAQDLVEVARFLHDDPGMAFDHLTDICSADYP 64 Query: 66 RKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLI 125 L +Y+ LS+ T+ I ++ V +P +VT A + EREV D+ G+ Sbjct: 65 DDLERFEVIYHFLSLPHNTR--IRLKTRVTEEQPTLGTVTSIWKGANFLEREVYDLMGIT 122 Query: 126 PVGLPDERRLVLPDDWPDELYPLRKD----------SMDYRQR-PAPTTDAETYEFINE- 173 G PD RR++LP+D+ +E +PLRKD + D+ R P ++ E + Sbjct: 123 FEGHPDLRRILLPEDY-EEGHPLRKDFPTEGKGWRSTFDFIPRLDEPESEWTEREIPQDQ 181 Query: 174 -----LGDKKNN-------VVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGME 221 GD + ++ +GP H ++ L +DGE + A + Y+HRG+E Sbjct: 182 RHMFLAGDAPESAKRTTELLLNMGPQHPSTHGVLRVVLELDGERVAKAVPDMGYLHRGVE 241 Query: 222 KLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERL 281 KLAE + Y +V +DR+ +C ++ AY +VE +G+ +PERA+ +R I+ EV+R+ Sbjct: 242 KLAEG-LHYMQVIPHTDRLDYVCAMTNNYAYVRAVEKLVGVTIPERAEYVRTIVAEVQRI 300 Query: 282 HSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDD 341 HL LG G + F FR RE + E L GAR T IGG+ DL Sbjct: 301 VGHLFWLGTQALDIGAMTVFFWTFREREVLLDFFEQLCGARLTLNYYRIGGVDGDLTPAL 360 Query: 342 MIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHAR 401 + + R + VQE +L RT + + E A +F GP +R SG A Sbjct: 361 IERLRGFLKTFPEHVQEYDTLLQRNRIWVARTKNVAVISAEDAINFGLTGPTLRGSGVAY 420 Query: 402 DTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEG 461 D R P+ Y + +V +G D R +R+ E+ + +I+ LD LP GP+M + Sbjct: 421 DVRKLEPYGVYDRVEWDVPVGKGGDTYDRYWIRVEEMKQSARIIEQCLDQLPEGPIMADM 480 Query: 462 FTYIP--------------HRFAL---GF----------AEAPRGDDIHWSMTGDNQKLY 494 IP H F + GF E P+G+ + ++ + + Y Sbjct: 481 PQVIPPAKPNVMRDMESLIHHFIIFTQGFKPPKGETYCGTEVPKGELGFFLISDGSPRPY 540 Query: 495 RWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 R + R+ ++ + +M RG +SD I G+ D DR Sbjct: 541 RMKIRSPSFVHMGAFDFMARGYLISDIITIFGTYDIVMGECDR 583 >UniRef50_Q5P2H0 Subunit of formate hydrogenlyase-like membrane complex, related to large subunit of hydrogenases n=15 Tax=Proteobacteria RepID=Q5P2H0_AZOSE Length = 551 Score = 189 bits (480), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 152/482 (31%), Positives = 230/482 (47%), Gaps = 9/482 (1%) Query: 55 GWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWG 114 G L L+G+D R + +AV + +G + + +D +P YP ++ AV Sbjct: 78 GRLVSLWGSDRRAMGDGFAVGAAYATAEGL---LWAELGLDVVRPAYPDISRFFVPAVRM 134 Query: 115 EREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINEL 174 +R D+ G+ D R + WP + +PLR ++ ++R AP D Y F+ Sbjct: 135 QRAAHDLVGIDAEDSGDSRPWLRHGAWPADYFPLRIENTG-QERFAPQPD--NYPFVFVE 191 Query: 175 GDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVT 234 GD + + +GP+H + EPGHFR V GE ++ + R Y H+G+E+ M +E Sbjct: 192 GDGVHEIA-VGPVHAGTIEPGHFRFSVVGEKVLRLEERFGYTHKGIERRF-MGMDIDEGA 249 Query: 235 FLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHF 294 L+ RV G A++ AY + E+A G+ VPERA +RA+LLE ER+ +HL +LG + Sbjct: 250 RLAGRVSGDSTVAYAWAYAMAAESAAGVAVPERAAWLRALLLERERVANHLGDLGALGND 309 Query: 295 TGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRR 354 F QF R+RE ++ G R GG+ RDL Q R+ A + Sbjct: 310 AAFGFALAQFSRLREDWLRANFEAFGHRLLMDCIRPGGVARDLDAAAAAQLRRDAVALVA 369 Query: 355 EVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGL 414 EV EL D+ ++ R V GR+ PE+A G RASG D R D P+ Y Sbjct: 370 EVAELKDIYDEHAGLQDRFVTTGRVAPELAARLGLTGLAGRASGQVADLRVDFPWPPYDK 429 Query: 415 LPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFA 474 L + ++ DV +R+ VR +E + +L +ID L LP GPL G+ Sbjct: 430 LAVTASTQFNGDVAARVAVRFDECFESLRLIDALLAALPDGPLDAP-VAIRDAASGAGWI 488 Query: 475 EAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSC 534 E RG+ T ++ R C ++ NWP + + N V+D PLI S + YS Sbjct: 489 EGWRGEIFVALETDARGRIARCHCHDPSWQNWPVIEHASIDNIVADFPLINKSFNLGYSA 548 Query: 535 TD 536 D Sbjct: 549 QD 550 >UniRef50_A0B812 F420H2 dehydrogenase subunit C n=6 Tax=Archaea RepID=A0B812_METTP Length = 390 Score = 187 bits (474), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 126/389 (32%), Positives = 193/389 (49%), Gaps = 15/389 (3%) Query: 157 QRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYV 216 +RP T E E E+ ++ +GP H P L ++GE + A + Y+ Sbjct: 9 ERPKYPTFREREE--AEIKSDSEMIMHMGPQHAIVPGPFLLDLLIEGERVKKAFLDVGYI 66 Query: 217 HRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILL 276 H+G+EK+ E R Y + +DR+C + ++ AY +VE +GI PERAQ IR IL Sbjct: 67 HKGIEKIMENRT-YLQGIVYTDRMCYLASITNNEAYCGAVEKLLGITPPERAQYIRVILA 125 Query: 277 EVERLHSHLLNLGLACHFTGFD--SGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIR 334 E+ R+ SHLL G G S F RE + + E +TGAR T+ GG+R Sbjct: 126 ELSRIQSHLLGTGEFLTLLGAATYSPFQYMIIDREDIVYLMESITGARITHTFVRFGGVR 185 Query: 335 RDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMV 394 DL + R + ++MR +E +D+L S P +R GIG L P AR GP + Sbjct: 186 NDLPDGFADKARPILKRMRERTEEYMDLLHSDPIYTRRMRGIGVLSPGDARRLGVSGPPL 245 Query: 395 RASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPG 454 RAS D R + P + Y L +V + + D +R++VR+ E+ ++++I+ LD +P Sbjct: 246 RASDTPYDMRREDPILVYPDLDFKVVTRKAGDAEARVEVRLEEILESIHIIEQCLDQIPD 305 Query: 455 GPLMVEGFTYIPHRFALGFAEA------PRGDDIHWSMTGDNQKLYRWRCRAATYANWPT 508 GP+ + +P + EA PRG+ + ++ ++K YR + R YA Sbjct: 306 GPIQEK----LPKKIKPEPGEAYYRVEDPRGEMGFYVVSDGSEKPYRVKVRGPVYAYMQA 361 Query: 509 LRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 L +L G V+D I GS+D C S DR Sbjct: 362 LPPLLEGAYVADVVAIAGSMDACTSEVDR 390 >UniRef50_C6PUG2 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PUG2_9CLOT Length = 526 Score = 184 bits (467), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 133/528 (25%), Positives = 242/528 (45%), Gaps = 11/528 (2%) Query: 14 LNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVLF---GNDERKLNG 70 E + + + K+++ V V+++++ ++ K F ++E Sbjct: 6 FKEELSNLKYNSEIKNKNEIYVDVEISHVKSLISLFLVKYKLKFIAQFCVDNSNEENAQN 65 Query: 71 HYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLP 130 + + +LS K + ++ VR + + E + + + ERE+ D++GL Sbjct: 66 DFMINIILSNSK-KRYFVIVRYKT---QEEIKTFQDILFQSHLFEREMCDLFGLKIKDGI 121 Query: 131 DERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVT 190 D R++V + WP+++YPLRK S Y + + Y+ GD + +GP+H Sbjct: 122 DTRKIVKHEKWPEDVYPLRK-SFPYGAKLEEKNEILPYKCKEAFGDGAYQI-SVGPVHAG 179 Query: 191 SDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHST 250 EPGHFR V GE I + + RL Y HRG+EK+ E + +++ + +R+ A++ Sbjct: 180 IIEPGHFRFSVIGEAIENLELRLNYKHRGIEKICEN-VDASKLNLVFERMACESSAAYAE 238 Query: 251 AYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRET 310 +Y VE + P+ + +R +LLE+ER+++ L ++ C GF +F E Sbjct: 239 SYALLVEKLLSYDTPQEIKALRVVLLELERIYNFLGDISGICVDIGFSYPAKRFGAFGEQ 298 Query: 311 SMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNME 370 K+ E +TG+R + + GI D K+ + ++ M++ + +++++ L + + Sbjct: 299 IHKLCERITGSRFMRNVIIPCGINIDFTKEHIEDIKKTLNGMKKRMDKIIEITLDSVSFL 358 Query: 371 QRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISR 430 R G + + A+ G RASG D R P+ YG+L ++ + V R Sbjct: 359 DRVENTGIVRNKTAKKLYMTGITGRASGINYDVRKSFPYEIYGILKKNNNTLEIGGVFER 418 Query: 431 LKVRINEVYTALNMIDYGLDNLPGGPLMVEG-FTYIPHRFALGFAEAPRGDDIHWSMTGD 489 K++I E+Y A N I LD + L + F + AL E +G+ I + G Sbjct: 419 YKLKIKEIYDAYNFIFASLDFINKDILKTKTEFKLVEETEALAAVETVKGELIVYGKVGK 478 Query: 490 NQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + K R + + NW L Y + G V D PL S + YS D+ Sbjct: 479 DNKFNRIYFKTPSVTNWNGLTYAVLGEIVPDFPLCNKSFNMSYSENDK 526 >UniRef50_UPI0001C42022 energy-converting hydrogenase B subunit N EhbN n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C42022 Length = 391 Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 110/359 (30%), Positives = 187/359 (52%), Gaps = 8/359 (2%) Query: 182 VPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 241 + +G +H + EP R FV+ E I DA+ + HRG+E++ E + + L++++C Sbjct: 16 IQMGTVHPAALEPYRVRFFVEDEIIKDAEITIGVNHRGIERVMEG-LPVEKANMLTEKIC 74 Query: 242 GICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGF 301 GIC +H+ + E +G++VP+RA IR I+ E+ERLHSHLL LG C ++ Sbjct: 75 GICSNSHTWNSVRTAEKGLGVEVPDRAVYIRVIVGELERLHSHLLYLGHGCETLAHETFS 134 Query: 302 MQFFRVRETSMKMAEILTGARKTYGLNLIGGIR-RDLLKDDMIQTRQL--AQQMRREVQE 358 M+ F +RET M + ++ G R YG ++IGG+R R L D+ IQ R L + + V + Sbjct: 135 MRVFYIRETIMDLLAMIGGNRVQYGCSIIGGVRPRCELDDNRIQ-RILDGMDLVEKNVLD 193 Query: 359 LVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPME 418 + + + R G G + E A + GP +RA+G RD R D Y + Sbjct: 194 FANRFVKDSVVASRISGTGYIPQEQALKLAVSGPTLRATGVKRDLRTD--MYEYDNFDYD 251 Query: 419 VHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPR 478 + ++ CDV ++L +R+ E++ A+ ++ + +LP G + + I + E PR Sbjct: 252 IITQDTCDVQAQLLMRVFEIFEAIKIVRQAIRDLPEGKITDRSWEMIDTDLIESYIEVPR 311 Query: 479 GDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 G H S ++ ++ R + +N ++Y N ++D L I DPC++C+DR Sbjct: 312 GTLYH-SYAIEDGRVRHCIIRTPSMSNIGAMQYACIDNHITDGQLCIVQCDPCFTCSDR 369 >UniRef50_C6NX38 Ni,Fe-hydrogenase III large subunit n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NX38_9GAMM Length = 527 Score = 181 bits (458), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 136/485 (28%), Positives = 221/485 (45%), Gaps = 10/485 (2%) Query: 52 KQGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAA 111 +QGG L ++G + + ++ + + W T+ + AN E+PS++ P A Sbjct: 52 QQGGRLLGIWGEHQDTAGANIHAFF---LTESGYLWCTL--PLPANLREFPSLSSVFPTA 106 Query: 112 VWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFI 171 ER +RD+ GL P+G PD R + WP ++PL D + Y + Sbjct: 107 CRQERAIRDLLGLEPLGNPDMRPWLRHAAWPANIHPLAMS--DIPEDILSCAGEIDYSYR 164 Query: 172 NELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYN 231 G + + P+GP+H + EPGHFR GE I+ + RL Y H+G+E+L + Sbjct: 165 APAGQDLHEI-PVGPVHAGTIEPGHFRFTCLGEQIVQLEERLGYCHKGIERLF-VGQPPD 222 Query: 232 EVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLA 291 L+ RV G A++ +Y +VE+ I++ +RA +R + LE ERL +HL +LG Sbjct: 223 AALRLAGRVSGDSSVAYAWSYAMAVESVAEIELSQRALALRGLCLERERLANHLGDLGAL 282 Query: 292 CHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQ 351 + G Q ++E ++ + G R + +GG+ DL + Q ++ Sbjct: 283 GNDAGLAFALTQLLAIKEELLRENAEIFGHRYLMDVVQLGGVAVDLDGRALQHIEQSSKA 342 Query: 352 MRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVG 411 RR ++ L +L + R V G + E A + G RASG A D R Sbjct: 343 WRRRLETLDLLLQEHAGLRDRLVATGPITAERAAYWGMAGLSGRASGQAWDLRTHFAPPP 402 Query: 412 YGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFAL 471 Y PME+ + DV +R VR EV+ L + + NLPGG V + L Sbjct: 403 YDRYPMEISLARRGDVAARWAVRFAEVFRCLRWQENVVANLPGGSPRVALKAFPKDGEGL 462 Query: 472 GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPC 531 G E RG ++ ++ ++ + R +++ WP L + + V+D PLI S + Sbjct: 463 GICEGWRG-EVFVALRLEDGHIARCHPHDPSWSLWPVLEEAVCQDIVADFPLINKSFNLS 521 Query: 532 YSCTD 536 YS D Sbjct: 522 YSGQD 526 >UniRef50_C9LCY9 NADH dehydrogenase I, C/D subunit n=9 Tax=Bacteroidales RepID=C9LCY9_9BACT Length = 558 Score = 179 bits (455), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 141/498 (28%), Positives = 223/498 (44%), Gaps = 21/498 (4%) Query: 56 WLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGE 115 +L L G D + +G VY + S + + + D P P+V+ A E Sbjct: 66 FLETLTGMDWGE-DGLGVVYNLWSTTQNKRISLKT-ATTDRENPFLPTVSDLWNIANIYE 123 Query: 116 REVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRP-----APTTDAETY-- 168 REV D +G+ +G PD RR+ L +DW YP+RKD + P P D T Sbjct: 124 REVFDFFGIKFLGHPDMRRIFLREDWNG--YPMRKDDKPEEENPLRMDNEPLADVTTQYD 181 Query: 169 -------EFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGME 221 N + + + VV IGP H ++ HFR+ ++GE I D L Y+HRG+E Sbjct: 182 RPDGSITTKENTIFTEDDYVVNIGPQHPSTHGVLHFRVALEGERIRKIDPILGYIHRGIE 241 Query: 222 KLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERL 281 KL E+ + Y + L++R+ + + A +E A GI+V ER Q IR I+ E +R+ Sbjct: 242 KLNES-LTYPQTLALTERLDYLGAMQNRHALCMCIEKAAGIEVSERVQYIRTIMDEFQRI 300 Query: 282 HSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDD 341 SH+L C G S F+ FR RE + + E G R N IGG+ D+ + Sbjct: 301 DSHILFFSCLCQDMGATSAFLYGFRDREQILDIFEETCGGRLILNYNTIGGVMADIHPNF 360 Query: 342 MIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHAR 401 + + ++ MR +QE D+ ++ R G+G L+ E F G RA+G + Sbjct: 361 VRRVKEFIPYMRHNLQEYYDIFVNNVIAHNRLEGVGVLNKEQVISFGCTGGTGRAAGWSN 420 Query: 402 DTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEG 461 D R P+ Y + + + D +RL VR+ E+ +L +I+ +D +P GP + Sbjct: 421 DLRKHQPYAAYDKVDFQEITYTEGDSFARLMVRMKEIEESLKIIEQLIDGIPEGPFQTKT 480 Query: 462 --FTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVS 519 IP E RG+ + ++ R R+ + + R N ++ Sbjct: 481 KPIIKIPAGTYYSAVEGSRGEFGVLLESKGDKFPSRLHYRSTGLPLVAAMDTICRDNFIA 540 Query: 520 DAPLIIGSLDPCYSCTDR 537 D I G++D DR Sbjct: 541 DLMAIGGTVDYVVPDIDR 558 >UniRef50_Q2C5T4 NADH dehydrogenase I, B/C/D subunits n=2 Tax=Photobacterium RepID=Q2C5T4_9GAMM Length = 565 Score = 179 bits (453), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 149/542 (27%), Positives = 247/542 (45%), Gaps = 41/542 (7%) Query: 34 TVTVKVNYLPEVVEFLYYKQGGWLSVLF---GNDERKLNGHYAVYYVLSMEKGTKCWITV 90 + VK +L + + FL + +LF DE + G +V+Y L K K +I++ Sbjct: 27 SFEVKKEHLIDTLHFLKNEASSRFEMLFDLSAIDECERGGGLSVFYYLLSVK-NKQFISI 85 Query: 91 RVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPD----ELY 146 R + + E P+V P A W EREV DM+G+ PD RR++ D W + Y Sbjct: 86 RTHIANDTIEVPTVVGLWPNANWYEREVYDMFGIKFTDHPDLRRILTFDFWKGHPLRKSY 145 Query: 147 PLRKDSMDY---RQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDG 203 P R MD + P ++Y+ I D + V+ IGP H +D ++ + G Sbjct: 146 PCRATLMDEPFDLEGPDFDDVMKSYD-IQGKQDDGSMVLNIGPNHPGTDGVIRLKVKMKG 204 Query: 204 ENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQ 263 E I D D + + HRG EK+AE +N + + +DR+ + G A Y +E GI+ Sbjct: 205 EFIEDLDQEIGFHHRGAEKIAERHTFHNYIPY-TDRIDYLGGVAGELPYLLGLEAMTGIE 263 Query: 264 VPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARK 323 VPERA+ +R +L E+ R+ SHL+ G H G + F RE + E++ G R Sbjct: 264 VPERAKTMRIMLCELFRISSHLVWFGSITHNLGGMAPAFYAFTEREKIFDVIELICGGRM 323 Query: 324 TYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEI 383 IGG+ +DL + Q + + V +L ++ + + RT I + Sbjct: 324 HPAFFRIGGVSQDLPDGWQDKVEHACQGIEQLVPDLEKLMTHSMIFKIRTQNIAVYSQSM 383 Query: 384 ARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALN 443 A D+ GP +RA+G D R D P++GY +V Q D +R +R+ EV +L Sbjct: 384 ALDWGLTGPNLRATGINFDMRKDFPYMGYEDYDFDVPVGQDGDAYTRTVLRVQEVVESLK 443 Query: 444 MIDYGLDNLPGGPLMVE-----GF----------TYIPHRF---ALGF----------AE 475 +I +P GP++ + GF + H F GF E Sbjct: 444 IIRQAAARMPEGPILADNAPSFGFPRKQNALRDIETLIHSFVDTGRGFNFPVAETFYATE 503 Query: 476 APRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCT 535 +G + +++ YR R R ++ ++ +++ + +G+ +S+ +IGS+D + Sbjct: 504 TAKGVTSYHTISNGTGCPYRVRIRTPSFTHFQSVKAVSKGDLLSNIICLIGSIDYVLADI 563 Query: 536 DR 537 DR Sbjct: 564 DR 565 >UniRef50_B8J7E4 NADH-ubiquinone oxidoreductase chain 49kDa n=14 Tax=Bacteria RepID=B8J7E4_ANAD2 Length = 521 Score = 177 bits (449), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 141/492 (28%), Positives = 221/492 (44%), Gaps = 27/492 (5%) Query: 51 YKQGGWLSVLFGNDERKLNGHYAVYYVLSME-KGTKCWITVRVEVDANKPEYPSVTPRVP 109 ++ GG L+ LFG + G V VL+ + +G + RV DA +PS+ +P Sbjct: 50 HRGGGRLAALFGRPD--AGGGVLVTAVLADDPEGRLALLATRV-ADA----FPSIAAELP 102 Query: 110 AAVWGEREVRDMYGLIPVGLPDERRLVLPDDW--PDELYPLRKDSMD--YRQRPAPTTDA 165 AA ERE+ + +GL P G P W P P R+ + D RQ P T Sbjct: 103 AAQAFERELAEQWGLRPEGHP----------WLKPLRFEPPRRAAPDPFGRQDPRATIPG 152 Query: 166 ETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAE 225 E Y F G++ + V +GP+H EPGHFR GE + + L Y HRG+E+L Sbjct: 153 E-YPFFRVEGEEVHEVA-VGPVHAGIIEPGHFRFQCHGERVFHLEIVLGYQHRGVERL-- 208 Query: 226 TRMGYNEVTF-LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSH 284 R G + + L++ + G H AY +VE+ G+ RA +R I LE+ER+ +H Sbjct: 209 LRGGPDRRSMALAESIAGDTAVGHGLAYAKAVESLAGVAPTARAMSLRGIGLELERIANH 268 Query: 285 LLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQ 344 + +LG GF +R + + G R L GG++ DL + Sbjct: 269 VGDLGALAGDVGFLPTASYCGALRAEFLNAVAEICGNRFGRSLVCPGGVKHDLDAEAARA 328 Query: 345 TRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTR 404 + + + ++ +P++ R G G + +A+ VGP RASG RD R Sbjct: 329 LAARVRAAWEKTRRAASLMFESPSVRARFEGTGTVPTALAQALGMVGPAARASGVDRDVR 388 Query: 405 ADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTY 464 DH F Y + V + + DV++R +R+ E ++ + L+ LPGGP Sbjct: 389 RDHAFGIYRFSHVAVTTAENGDVLARALIRLLEAERSVEFVLDQLERLPGGPSRTAPGPL 448 Query: 465 IPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLI 524 P + E RG+ H ++T +L ++ + ++ NW L LR +SD PL Sbjct: 449 APGALVVSMVEGWRGEIAHVAVTDAQGRLEAYKVKDPSFHNWFGLAMALRDGQISDFPLC 508 Query: 525 IGSLDPCYSCTD 536 S + Y+ D Sbjct: 509 NKSFNLSYAGHD 520 >UniRef50_D0L1P0 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=2 Tax=Gammaproteobacteria RepID=D0L1P0_HALNC Length = 518 Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 138/477 (28%), Positives = 221/477 (46%), Gaps = 17/477 (3%) Query: 66 RKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLI 125 R G ++V Y++S + + W VDA+ PS+ +P W ERE++D+YG+ Sbjct: 54 RDAEGKFSVRYIIS-QGANQPWGIW--SVDASSGTLPSLANVLPLLGWYEREIQDLYGIT 110 Query: 126 PVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIG 185 P+ L+L + + PL+ D + P AE + N +GD + P G Sbjct: 111 FTDHPEPYPLILHEGFIPAKPPLQT-GFDPKAEPI-RGQAEPFAEANMVGDDIQRL-PFG 167 Query: 186 PLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICG 245 P+ E F GE I+ RLFY HR ME E + + L++RV G+ Sbjct: 168 PIRADVVESAQFVFHYIGEGILHYHPRLFYKHRAMEARFEG-VPISAACVLAERVSGVDS 226 Query: 246 FAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFF 305 AH A++ ++E A+G Q P RAQ R +L E+ERL++HL G T + Sbjct: 227 VAHVLAFSQAMEAALGWQAPLRAQAWRVVLAELERLYNHLQFFGHLAKTTTLKVAEAEGI 286 Query: 306 RVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLS 365 + E ++ LTG+R G+ + GG+RRDL +I Q ++++ +D L + Sbjct: 287 WLEEQVKQINGRLTGSRFLRGVIVPGGLRRDLDATALIADLNALQP---QIEDYLDTLAN 343 Query: 366 TPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGC 425 T + R + G L ++A D GP+ RAS RD R DH + Y L V + Sbjct: 344 TRSYLDRLLTTGVLPRQVAFDQGATGPIERASDLDRDLRRDHGYALYPELQFAVPTATEG 403 Query: 426 DVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIP--HRFALGFAEAPRGD--- 480 D +R +VR E+ +L++I L+ L GP+ T P LG+AEA RG Sbjct: 404 DADARARVRDQEIRQSLHLIRQALNKLEPGPICRTESTIDPPMEGMGLGWAEAVRGGLIY 463 Query: 481 DIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 +HW ++L R + + +++NW + + + + D + S + DR Sbjct: 464 AVHWD--AKTERLTRVKIKEPSFSNWRVFPFTVNDSNMMDYAINEASFGLSVAGADR 518 >UniRef50_D2U4G0 NADH-quinone oxidoreductase chain C/D n=1 Tax=Arsenophonus nasoniae RepID=D2U4G0_9ENTR Length = 614 Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 150/556 (26%), Positives = 248/556 (44%), Gaps = 55/556 (9%) Query: 33 LTVTVKVNYLPEVVEFLYYKQGGWLSV--LFGNDERKL-------NGHYAVYY-VLSMEK 82 L + +K L V+EFL + ++ + L G DER+ + ++V+Y ++S+E+ Sbjct: 63 LVIWIKREQLLAVIEFLKKQPKPYVMLFDLHGVDERQRVYRHGLPDADFSVFYHLISIER 122 Query: 83 GTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWP 142 I ++V + PS+ P A W EREV DM+G+ G P+ RRL++P W Sbjct: 123 NRD--IMLKVALSEKDLNVPSLVSLFPNANWYEREVWDMFGITFTGHPNLRRLLMPVTWQ 180 Query: 143 D----ELYPLRKDSMD----YRQRPAPTTDAETYEFINELGDKKNN------VVPIGPLH 188 + YP R D +Q+ ++ T++ E G + N + +GP H Sbjct: 181 GHPLCKDYPARATEFDPFVLTKQKLDLEMESLTFK-PEEWGMARGNEHEDFMFLNLGPNH 239 Query: 189 VTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAH 248 +S L +DGE IID + Y HRG EK+ E R ++ +DR+ + G + Sbjct: 240 PSSHGAFRIVLQLDGEEIIDCVPDIGYHHRGAEKMGE-RQSWHSYIPYTDRIEYLGGCVN 298 Query: 249 STAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVR 308 Y +VE GI VPER IR +L E+ R++SHLL + G + F R Sbjct: 299 EMPYVLAVEKLAGIDVPERVMTIRVMLSELFRINSHLLYISTFIQDVGAMTPVFFAFTDR 358 Query: 309 ETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPN 368 + + E +TG R IGG+ DL + ++ M + + V L Sbjct: 359 QKIYDIIEAITGFRMHPAWFRIGGVAHDLPQGWQKLLQEFLDWMPKRLDSYVKAALQNSI 418 Query: 369 MEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVI 428 ++ R+VG+ + A D+ G +RA+G D R P+ GY EV D Sbjct: 419 LKGRSVGVAAYTTKEALDWGVTGAGLRATGLDFDIRKWRPYSGYENFEFEVPIGNNGDCY 478 Query: 429 SRLKVRINEVYTALNMIDYGLDNLPGGPL---------------------MVEGFTYI-- 465 R+ +++ E+ +L+++ L+N+P GP M+ F + Sbjct: 479 DRVMLKVEELRQSLHILKQCLNNMPAGPFKADHPLTTPPPKERTLQHIETMINHFLQVSW 538 Query: 466 ----PHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDA 521 P A EA +G + ++ + N YR R R ++A+ + ++RG+ VSD Sbjct: 539 GPVMPANEAFQMIEATKGINSYYLTSDGNTMSYRTRVRTPSFAHLQQIPAVIRGSLVSDL 598 Query: 522 PLIIGSLDPCYSCTDR 537 + +GS+D S DR Sbjct: 599 IVYLGSIDFVMSDVDR 614 >UniRef50_A1KEQ8 Possible formate hydrogenase hycQ (FHL) n=14 Tax=Actinomycetales RepID=A1KEQ8_MYCBP Length = 492 Score = 175 bits (443), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 137/447 (30%), Positives = 218/447 (48%), Gaps = 22/447 (4%) Query: 94 VDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSM 153 V A+ PE S+ A ERE+ D+YG+ PVG P RRLV WPD +P+R D+ Sbjct: 63 VPADNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWPD-WHPMRTDAG 121 Query: 154 DYRQRPAPT-TDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYR 212 PAP TD + F+ G + P+GP+H EPGHFR V GE I+ R Sbjct: 122 -----PAPEFTDTGAFPFLAVEGPGVYEI-PVGPVHAGLIEPGHFRFSVAGETIVRLKAR 175 Query: 213 LFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIR 272 L++VHRG+EKL R V L++R+ G AH+ A++ ++E+A+GI++P +R Sbjct: 176 LWFVHRGIEKLFHGRPATAAVD-LAERISGDTSAAHALAHSLAIEDALGIELPHEIHRLR 234 Query: 273 AILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGG 332 A+++E+ERL++H +LG + G+ R+RE ++ +TG R G GG Sbjct: 235 ALIVELERLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGG 294 Query: 333 IRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGP 392 + L D T +LA + ++ E+ + L+ + R G L P+ A +G Sbjct: 295 VALRALPD----TDELA-ALAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGY 349 Query: 393 MVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNL 452 + RASG D R +HP + +LP+ DV++R VR +E + + + +++ Sbjct: 350 VARASGLRSDARVEHPTI---VLPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVESH 406 Query: 453 PGGPLMVEGFTY---IPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTL 509 GP+ + P +G E RG +H + ++ R + ++ NWP L Sbjct: 407 T-GPIEYAATLHPVGAPSS-GIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPAL 464 Query: 510 RYMLRGNTVSDAPLIIGSLDPCYSCTD 536 + V D PL S + Y+ D Sbjct: 465 PVAMADTIVPDFPLANKSFNQSYAGND 491 >UniRef50_Q57935 Uncharacterized protein MJ0515 n=17 Tax=Euryarchaeota RepID=Y515_METJA Length = 380 Score = 175 bits (443), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 114/362 (31%), Positives = 184/362 (50%), Gaps = 7/362 (1%) Query: 182 VPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 241 +PIGP+H EP +L +DGE +DA+ + YVHRG+EK+ E + + + L++RVC Sbjct: 8 IPIGPIHPVLKEPLRIKLVLDGEKPVDAEIEMGYVHRGIEKIMEGKHCHKGI-HLAERVC 66 Query: 242 GICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGF 301 GIC + H+ + +E+ I++P++A+ +R + E+ER+HSHL+ + ++ Sbjct: 67 GICSYVHTMTFAECIEHISKIEIPDKAKYLRVVTCELERIHSHLIASAVYNLSIEHETLA 126 Query: 302 MQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVD 361 M VRE M + E++TG R G N+IGG+RRD+ ++ M + + E++ +++ Sbjct: 127 MWLLNVREIIMDLMEMITGNRVNMGYNVIGGVRRDINREMMDEIYKKLDIFEDELKNIIE 186 Query: 362 VLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHAR-DTRADHPFVGYGLLPME-V 419 V + P + R+ IG L VGP+ R SG D R H Y L + V Sbjct: 187 VFETGPLIALRSKEIGILPYHEVMRTRAVGPICRGSGLPESDWRLRHS--TYQELKFKPV 244 Query: 420 HSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRG 479 E+G D +R+ VR E+ ++ +I L++ + I EAPRG Sbjct: 245 WREEG-DNFARMMVRHEEIIESVRLIREALEHYEECSGDIRVKAEIKGGKGEWRNEAPRG 303 Query: 480 DDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGN-TVSDAPLIIGSLDPCYSCTDRM 538 + + D + R R T N +YML+ TV+DA S+DPC SCT+R Sbjct: 304 EVTYRMEITDGGIIKRIMIRTPTVMNLEAYKYMLKTCPTVADAVSAYTSIDPCVSCTERC 363 Query: 539 TV 540 V Sbjct: 364 IV 365 >UniRef50_Q2NED9 EhbN n=5 Tax=Methanobacteriaceae RepID=Q2NED9_METST Length = 383 Score = 173 bits (439), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 105/358 (29%), Positives = 183/358 (51%), Gaps = 6/358 (1%) Query: 182 VPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 241 + +G +H + EP RLFV+ E + DA+ + HRG+E++ E + + L+++VC Sbjct: 23 INMGTVHPAALEPYRVRLFVEDEIVKDAEITVGLNHRGIERIMEG-LPVEKANALTEKVC 81 Query: 242 GICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGF 301 GIC H E A+GI++PERA +R + E+ERLHSH+L LG ++ Sbjct: 82 GICSNGHIYNSCRVGEGALGIEIPERAVYLRVLAEELERLHSHMLYLGHGSEVLCHETFA 141 Query: 302 MQFFRVRETSMKMAEILTGARKTYGLNLIGGI--RRDLLKDDMIQTRQLAQQMRREVQEL 359 M+ F +RE+ M + ++ G R YG++++GG+ R DL + + + +V + Sbjct: 142 MRIFYIRESVMDLLYMMGGNRVQYGISVLGGVRPRADLNLKEQQRVLDTMDYIDEKVADF 201 Query: 360 VDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEV 419 + ++ P + R G G L + A D GP +RA+G+ D R + Y ++ Sbjct: 202 AERFIADPMVMHRITGTGELSQKQALDLHVTGPSLRATGYEYDFRTE--MFEYEPFEFDI 259 Query: 420 HSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRG 479 ++ G DV + + +R E++ + +I + NLP GP++ + + + E PRG Sbjct: 260 ITQDGGDVRANILMRATEIFESTKIIRQVIKNLPKGPIVTRDWDLVDSPVYKSYIEVPRG 319 Query: 480 DDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 H S ++ K+ R + +N ++ G+ + DA L I S DPC++CTDR Sbjct: 320 VCYH-SYGLEDGKVRHSIIRTPSMSNIGAMQESCIGHPIQDAQLAIVSCDPCFTCTDR 376 >UniRef50_Q2YAA3 NADH-quinone oxidoreductase subunit C/D n=259 Tax=cellular organisms RepID=NUOCD_NITMU Length = 608 Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 139/512 (27%), Positives = 228/512 (44%), Gaps = 59/512 (11%) Query: 74 VYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDER 133 +Y++LS E+ + ++V + P++T PAA W ERE+ DM+G++ G P R Sbjct: 108 IYHLLSFERNAD--VCLKVALTDTDLRMPTITDIWPAANWYEREIWDMFGIVFDGHPHLR 165 Query: 134 RLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGP------- 186 R++LP W + + LRKD PA T+ E + E + + + P Sbjct: 166 RILLPPWW--QGHALRKD------HPARATEMEPFHLSTEKEEAEQETLRFHPEEWGMRR 217 Query: 187 ---------LHVTSDEP---GHFRLFV--DGENIIDADYRLFYVHRGMEKLAETRMGYNE 232 L++ + P G FR+ + DGE IIDA + + HRG EK+ E R ++ Sbjct: 218 THDGTDFMFLNLGPNHPSVHGVFRIVLQLDGEEIIDAVPEIGFHHRGAEKMGE-RQSWHT 276 Query: 233 VTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLAC 292 +DR+ + G ++ Y +VE GI+VP+R +++R ++ E R+ SHL+ G Sbjct: 277 YIPYTDRIDYLGGVMNNLPYVLAVEKLAGIEVPDRVKVMRVMMAEFFRIASHLVFYGTFT 336 Query: 293 HFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQM 352 G S F RE + E + G R IGG+ +DL R M Sbjct: 337 QDLGALSPVFFMFTDRERVFDVVEAICGGRMHPSWYRIGGVAQDLPNGWDRMVRDFLDYM 396 Query: 353 RREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGY 412 + E + + ++ RT G+G + A ++ GP +RA G D R P+ GY Sbjct: 397 PARLDEYDKIAVGNRILKARTRGVGGYSIDEAIEWGVTGPNLRACGFEWDFRKARPYSGY 456 Query: 413 GLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGG------PLMVEGF---- 462 +V + Q D R VR+ E+ +L +ID L+N+P G PL Sbjct: 457 DQFEFDVPTGQHGDCYDRCAVRVQEIRQSLRIIDQCLENMPAGAHKADHPLTTPPLKKHT 516 Query: 463 -----TYIPHRFALGFA------------EAPRGDDIHWSMTGDNQKLYRWRCRAATYAN 505 T I H + + EA +G++ ++ ++ N YR R R ++ + Sbjct: 517 LHDIETLIDHFLGVSWGPVIPPGEAFVGIEATKGNNGYYLISDGNTTAYRVRIRTPSFPH 576 Query: 506 WPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + + RG +SD I+GS+D + DR Sbjct: 577 LQMIPLISRGLMISDLIAILGSIDFVMADVDR 608 >UniRef50_Q3JMD7 Hydrogenase subunit n=33 Tax=Burkholderia RepID=Q3JMD7_BURP1 Length = 567 Score = 171 bits (433), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 143/464 (30%), Positives = 216/464 (46%), Gaps = 32/464 (6%) Query: 100 EYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRP 159 YP ++ +A +R + D+ GL G D R + WP + +PLR+ + + Sbjct: 108 SYPDLSAIFASATRMQRALHDLVGLRARGAHDTRPWLAHGAWPRDYHPLRRRATGGERFE 167 Query: 160 APTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRG 219 T D Y F+ GD + + +GP+H EPGHFR V GE ++ + RL Y HRG Sbjct: 168 YATAD---YPFVPVAGDGVHEIA-VGPIHAGVIEPGHFRFSVVGEKVLRLEERLGYAHRG 223 Query: 220 MEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVE 279 +E+L E R + L+ R+ G A + AY ++E A+ I+VP+RA +RA+LLE E Sbjct: 224 VERLFE-RADALAGSRLAARIAGDSTVAFAWAYCMALEQALRIRVPDRALRLRALLLERE 282 Query: 280 RLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLK 339 R+ +HL +LG + GF G F R++E ++M + + G R + GG+ RD+ Sbjct: 283 RVANHLGDLGALGNDAGFAVGLAHFSRLKEDWLRMQDRIFGHRYLMDAIVPGGVARDIAA 342 Query: 340 DDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGH 399 DD ++ REV+ + + ++ R G GRLD + F G RASG Sbjct: 343 DDAAAIVAQCDRIEREVRAMQTIYDDQSGLQDRFAGTGRLDAQAVAHFGVCGLAARASGQ 402 Query: 400 ARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMV 459 RD RADH Y L ++V + DV +R+ VR E Y ++ I L +LP L Sbjct: 403 PRDVRADHRLAPYDALRIDVSRDARGDVAARVAVRFAETYESMRAIRALLADLPDDGLAA 462 Query: 460 E---GFT---------------------YIP---HRFALGFAEAPRGDDIHWSMTGDNQK 492 E G T + P R +G+ E RG Sbjct: 463 EIAPGATVPGARADAGGACEGEEGGDAAFCPGDARRRGIGWIEGWRGPVFVALELDARGA 522 Query: 493 LYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 + R C ++ NWP L + + GN V+D PLI S + Y+ D Sbjct: 523 VARCHCHDPSWHNWPALEHAIIGNIVADFPLINKSFNLNYAGHD 566 >UniRef50_C6HVM5 Putative hydrogenase-3 subunit (HycE) n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HVM5_9BACT Length = 512 Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 131/453 (28%), Positives = 204/453 (45%), Gaps = 16/453 (3%) Query: 88 ITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYP 147 + + + + + +PS++ P A ER + D++GLIP GL D R + W P Sbjct: 71 VLLSLSLPKDAVSFPSLSSIFPPAARFERTIHDLFGLIPDGLADLRPWIDHGLWSHP--P 128 Query: 148 LRKDSMDYRQRPAPTT---DAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGE 204 L P+P T Y F+ GD + + P+GP+H EPGHFR V GE Sbjct: 129 LS-------HTPSPLTRLAQGMDYPFVRVRGDGVHEI-PVGPVHAGIIEPGHFRFSVVGE 180 Query: 205 NIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQV 264 ++ + R+ Y H+G+ +L R E L+ R+ G A S A++ +VE A+ I++ Sbjct: 181 KVLRLETRMGYTHKGIARLFRGR-NLPEAARLASRISGDSAVATSLAFSKAVEEALDIEI 239 Query: 265 PERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKT 324 E + +RAILLE ER+ +HL +LG + G F +RE ++ L G R Sbjct: 240 SEGVRFVRAILLERERIANHLADLGALGNDAGLAVALSLFHPLREAMHRINLSLFGHRLL 299 Query: 325 YGLNLIGGIRRDLLKDDMIQTRQLA-QQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEI 383 + + GG+ L MI+T L ++++ EV L + ++ R G L PE+ Sbjct: 300 FDSVVPGGVSTG-LSGAMIETLLLENERLQAEVSLLERIYADHGGLQDRFQNTGILSPEV 358 Query: 384 ARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALN 443 A G RASG D R DH + + DV SR+++R E++ +L Sbjct: 359 AGRLGIGGVAGRASGQGWDLRVDHREDPVHRFAPALALDHIGDVASRVRIRFFEIFESLR 418 Query: 444 MIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATY 503 + L + PG + R G E RG+ + W + L + Sbjct: 419 LTHALLTSFPGPDICATIPDPPAPREGAGIVEGFRGEVLGWVRILPGKILADAHIADGSP 478 Query: 504 ANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 W L + GN V+D PLI S +P YS +D Sbjct: 479 LLWHALEASVPGNLVADFPLINKSFNPSYSASD 511 >UniRef50_C7I0C0 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=1 Tax=Thiomonas intermedia K12 RepID=C7I0C0_THIIN Length = 532 Score = 169 bits (427), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 133/443 (30%), Positives = 208/443 (46%), Gaps = 18/443 (4%) Query: 102 PSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAP 161 PS+ ++P W ERE+ D+YGL G P+ LVL + P + PL D AP Sbjct: 101 PSLANKLPLLGWYEREMMDLYGLRFEGHPEPNPLVLHEGEPRDPAPL-ASGFD---PAAP 156 Query: 162 TTD-AETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGM 220 D A + ++ +P GP+ E F F GE I+ RLFY HR M Sbjct: 157 ARDYAPLPPIVPQVQGPDIQRLPFGPVRADIVESAQFLFFYIGEGILHYHPRLFYKHRAM 216 Query: 221 E-KLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVE 279 E + + V L++RV GI AH+ A+ +VE AMG + P RA+ +R +L E+E Sbjct: 217 EGRFQGATLATGAV--LAERVSGIDSVAHALAFAQAVEGAMGWRAPPRARYLRVVLAELE 274 Query: 280 RLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLK 339 RL++HL LG T G + + E ++ LTG+R GL GG+RRDL Sbjct: 275 RLYNHLHYLGHLSKTTTLKVGEAEGHLLEERVKQINGRLTGSRFLRGLITPGGLRRDL-- 332 Query: 340 DDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGH 399 D+ + + E+ + L +T + R + GRL+ ++A D GP+ RAS Sbjct: 333 -DITGLDKALDSVNDEIDRYLQRLENTRSHLDRLMTTGRLERQVAFDQGACGPIERASNL 391 Query: 400 ARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMV 459 RD R DHP+ Y + V +QG D +R VR+ E+ +L +I + G ++ Sbjct: 392 DRDLRRDHPYANYEKVRFSVPVQQGGDAHARSMVRMEEIRESLAIIRQTIGRTKPGEVLR 451 Query: 460 EGFTYI----PHRFALGFAEAPRGDDIHW-SMTGDNQKLYRWRCRAATYANWPTLRYMLR 514 F + P LG+ EA RG ++ ++ D +L R + + +++NW + + Sbjct: 452 --FDVMEDADPQGEGLGWVEATRGGLLYAVHLSEDRTRLQRVKIKEPSFSNWRVFPFTVE 509 Query: 515 GNTVSDAPLIIGSLDPCYSCTDR 537 + + D + S + DR Sbjct: 510 DSNMMDYAINEASFGLSIAGADR 532 >UniRef50_Q6MDR3 NADH-quinone oxidoreductase subunit D n=2 Tax=Parachlamydiaceae RepID=NUOD_PARUW Length = 402 Score = 168 bits (425), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 113/381 (29%), Positives = 191/381 (50%), Gaps = 28/381 (7%) Query: 184 IGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGI 243 +GP H ++ +L ++GE ++ D + Y+H G+EK E+R Y++V L DR+ + Sbjct: 23 LGPQHPSTHGVLRLKLRLEGEVVLSCDPVIGYLHTGVEKECESRT-YHQVFTLVDRLDYL 81 Query: 244 CGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQ 303 G A A+ ++E M I+VPERAQ IR ILLE+ R+ SHLL G + S FM Sbjct: 82 SGPAEEQAFAGALERLMNIEVPERAQTIRIILLELSRIASHLLWAGTSALELNMSSVFMY 141 Query: 304 FFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVL 363 F RE + + E ++GAR L IGG+ +DL D + ++ ++ +EL +L Sbjct: 142 SFAEREKILDLFEQVSGARMFPSLWRIGGLAKDLNSDFISHLKEFISGFQKIWKELDRLL 201 Query: 364 LSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQ 423 +R G+ +D EI + + GP++RASG + D R +P++GY ++ + Sbjct: 202 TDNFVWCKRLQGVAVIDQEICKQYMCTGPVLRASGISYDIRKAYPYLGYENYNFDIPTHI 261 Query: 424 GCDVISRLKVRINEVYTALNMIDYGLDNL-PGGPL-------------MVEGFTYIPHRF 469 D +R VR+ E+ ++++I+ + L PG L + + H+F Sbjct: 262 DGDSYARYLVRMEEMLQSISIIEQAIARLKPGVVLTNDRKVALPPRKELARSMEAVIHQF 321 Query: 470 AL-------------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGN 516 L E+ RG+ H+ ++ K YR R R+ ++++ L+ +LRG+ Sbjct: 322 KLISEGLHPPVGSVYNCVESARGELGHYVISDGTPKPYRLRVRSPSFSHVEVLKKVLRGH 381 Query: 517 TVSDAPLIIGSLDPCYSCTDR 537 +SD + I S+DP DR Sbjct: 382 VISDVVVAIASVDPILGDVDR 402 >UniRef50_D2RET0 NADH-quinone oxidoreductase, B subunit n=1 Tax=Archaeoglobus profundus DSM 5631 RepID=D2RET0_ARCPR Length = 709 Score = 167 bits (424), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 138/459 (30%), Positives = 226/459 (49%), Gaps = 27/459 (5%) Query: 88 ITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYP 147 +T+ + P+ S++ P++ + ERE+ + +G++ G R L D + +P Sbjct: 251 VTLAKRISRKNPKVESLSDIFPSSDYMEREMHEFFGVVFEGNKWMGRNFLLDVSTPK-FP 309 Query: 148 LRKD----SMDYRQRPAPTTDAETYEFINELGDK----KNNVVPIGPLHVTSDEPGHFRL 199 LRKD S + D + + +L D+ ++ +GP H S GH RL Sbjct: 310 LRKDFRLESQSIEEERPFLQDFDGNLDVTKLPDEFVKGDEYILVVGPQHPGS---GHMRL 366 Query: 200 FV--DGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFA-HSTAYTTSV 256 V DG+ I D YVHRG+EK+AE+R+ Y + L +R C I FA + Y ++ Sbjct: 367 IVKLDGDIIKDVIPDPGYVHRGVEKIAESRI-YIKNIPLVERPC-ITDFANYDICYVKAI 424 Query: 257 ENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAE 316 E A+GI+V ERA+ IR IL E+ R+ +HL + G+ F G +GFM F +RE + Sbjct: 425 EEALGIEVSERAKYIRTILAELCRIGTHLYDAGILSIFLGHSTGFMWAFGLREFVCEALT 484 Query: 317 ILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGI 376 ILTGAR T + GG+R D+ + + + R++ MRR +++ + + P + R + Sbjct: 485 ILTGARVTGSFIVPGGVRWDVSDEKLRRVREIVLAMRRRLEKFEKMFVKNPTVVARLENV 544 Query: 377 GRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRIN 436 G L + A++ VGP +RAS D R + Y + +V + + D +RL VR+ Sbjct: 545 GILSKKDAKELGIVGPFLRASNVRHDWRL-KGYEAYDCVDWDVVTAEEGDSYARLLVRVE 603 Query: 437 EVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALG----FAEAPRGDDIHWSMTGDNQK 492 E+ ++ +ID + +LP G V+ + LG E RG I+ S+ D + Sbjct: 604 EINQSIKIIDQLVRDLPSGETKVDMWKLTDLVLPLGEFVSCVEGARG-TIYMSIVSDGES 662 Query: 493 LYRWRCRAATYANWPTLRYML---RGNTVSDAPLIIGSL 528 +R R T +W LR + +G ++D I GS Sbjct: 663 TTPYRFRIVT-PSWYNLRGFVEACKGERLADLQAIYGSF 700 >UniRef50_C0QBF7 HyfG n=3 Tax=Bacteria RepID=C0QBF7_DESAH Length = 503 Score = 167 bits (424), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 120/450 (26%), Positives = 199/450 (44%), Gaps = 19/450 (4%) Query: 89 TVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPL 148 +V V P + S+TP P ERE+ + + ++P G P W + Sbjct: 70 SVEVVAADTDPAFQSLTPDCPQVQAFEREIYEQWNVLPQGHP----------WLKSV--- 116 Query: 149 RKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIID 208 + A T +F + G++ + V +GP+H EPGHFR GE + Sbjct: 117 -RSHPPVVAAHGKAAHAGTTDFFSIDGEEAHEVA-VGPVHAGIIEPGHFRFQCHGETVYH 174 Query: 209 ADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERA 268 + L Y HRG+E + + + + + G H TA +E GI VP R Sbjct: 175 LEISLGYQHRGVEPALKDGPDKRTLHYF-ETLAGDTSIGHGTAGCCMIEALAGIDVPPRG 233 Query: 269 QMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLN 328 Q IRAI E+ER+ +H+ +LG GF R+R ++ + ++ G R GL Sbjct: 234 QAIRAIAAELERIANHIGDLGAISGDVGFLPTMSYCGRIRGDALNLTAMICGNRFGRGLV 293 Query: 329 LIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFS 388 + GG D+ + + ++ + ++++L+TP++ R G++ + AR+ Sbjct: 294 IPGGTAWDITHAQTGELLRRLDEIHADAHSAIELMLNTPSVLARLENTGQVPTQTAREIG 353 Query: 389 NVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYG 448 VG RASG +D R HP+ Y L P+ V + + D ++R ++R E+ + I Sbjct: 354 LVGLAARASGLKQDVRTSHPYENYRLTPLPVITRKTGDCLARAQIRWGEIQASFKFIRTL 413 Query: 449 LDNLPGGPL--MVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANW 506 L +LPGG + + EG P + A E RG+ H + T K ++ ++ NW Sbjct: 414 LADLPGGEVANLWEG-KLPPQKMATILVEGWRGEICHTAATDSAGKFSFYKIVDPSFHNW 472 Query: 507 PTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 + LR +SD PL S + Y D Sbjct: 473 FGVSLALRNQQISDFPLCNKSFNLSYCGHD 502 >UniRef50_D2R5G7 NADH dehydrogenase (Quinone) n=2 Tax=Planctomycetaceae RepID=D2R5G7_9PLAN Length = 404 Score = 167 bits (424), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 116/413 (28%), Positives = 195/413 (47%), Gaps = 45/413 (10%) Query: 157 QRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYV 216 ++P+ T +E Y + + GP H + L +DGE ++DA + Y+ Sbjct: 5 EKPSSTVKSEDYLW----------TLNFGPQHPATHTTLRLVLKLDGERVVDAVPDIGYL 54 Query: 217 HRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILL 276 H G EK+ E + +N+ ++DR+ I A++ A+ +VE MGI++ R + IR I+ Sbjct: 55 HSGFEKIGE-HLDFNQYVTVTDRMNYISPMANNVAWHGAVEKLMGIEITPRCKYIRTIIC 113 Query: 277 EVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRD 336 E+ R+ HLL+ G TG + F+ F RE + E L GAR T +GG+ +D Sbjct: 114 ELARISDHLLSTGAMGLDTGAFTFFLYAFYQRERIYDIFETLCGARFTNSYTRVGGLSQD 173 Query: 337 LLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRA 396 + + + R + + + ++ ++ R G+G L E A + S GP+ RA Sbjct: 174 MTPLVIEKIRDFLRTFPQTIDDMERLVNRNRIFVDRMKGVGLLSKERATNMSATGPVARA 233 Query: 397 SGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGP 456 SG RD R D P++ YG L +V D +R VR+ E+ +L ++ L+NLP GP Sbjct: 234 SGVTRDLRKDEPYLAYGDLDFQVCCATAGDCFARYYVRMAEMRESLKIVAQALENLPAGP 293 Query: 457 LMV-------------------------------EGFTYIPHRFALGFAEAPRGDDIHWS 485 + V GFT +P+ EAP G+ + + Sbjct: 294 VNVGMDDRAALPSKAEVYQTIEGTITHFELVMLNRGFT-VPNEEVYSAIEAPNGE-LGFY 351 Query: 486 MTGDNQKL-YRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + GD + YR RCR ++ ++ ++RG+T+SD ++GSL+ + DR Sbjct: 352 LVGDGSDVAYRARCRPPSFIHFSLFPELIRGHTLSDVVAVLGSLNIIAAELDR 404 >UniRef50_A1RZ50 NADH dehydrogenase (Ubiquinone) n=6 Tax=Archaea RepID=A1RZ50_THEPD Length = 404 Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 124/392 (31%), Positives = 188/392 (47%), Gaps = 34/392 (8%) Query: 175 GDKKNNVVPIGPLHVTSDEPGHFRLFV--DGENIIDADYRLFYVHRGMEKLAETRMGYNE 232 GD+ + IGP H +S GH R V G+ I+ D + YVHR MEKLAE R Sbjct: 18 GDESVYELFIGPQHPSS---GHMRFIVRLQGDVIVSVDPDIGYVHRTMEKLAEGREAIKA 74 Query: 233 VTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLAC 292 + L +R+ I + T++E + ++ P RA +R +L E+ R+ SHL +G+A Sbjct: 75 IPLL-ERLTIIDSHNATVGLVTAMERLLDVEPPPRALYLRTLLSEINRIASHLYGMGIAG 133 Query: 293 HFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQM 352 + FM F RE +++AE LTGAR T+ ++ GG+RRDL + + + A+ M Sbjct: 134 IMLNHSTMFMWAFGDREVWLQLAEELTGARLTHTYSVPGGVRRDLPQGFGEKFEKAARYM 193 Query: 353 RREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGY 412 R +Q+ + + L P + R G+G L A VGP +RASG D R + Y Sbjct: 194 ERRLQDYMRIFLENPQVVARYEGVGVLKKSEASRLGVVGPNLRASGVKYDARLADDYGAY 253 Query: 413 GLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMV------------- 459 L EV + + D ++R+ VR+ E+ ++++I L +P GP++ Sbjct: 254 KDLEFEVPTREEGDCMARMLVRVEEIKQSISIIRQVLRKMPDGPILSEKYLKLLPPKTRE 313 Query: 460 ----EGFTYIPHRF---------ALGFAEAPRGDDIHWSMTGD-NQKLYRWRCRAATYAN 505 EG P F A+ AE G +I + +TGD + K YR R ++ N Sbjct: 314 RVLQEGRVKFPALFASLKLPAGEAVARAEMGHG-EIFYHITGDGSAKPYRLRVVTPSFRN 372 Query: 506 WPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 RY+ G+ D P I GSLD DR Sbjct: 373 VILFRYLAPGHRFMDFPAIYGSLDYFPPEADR 404 >UniRef50_D2PDB9 NADH dehydrogenase (Ubiquinone) n=10 Tax=Sulfolobaceae RepID=D2PDB9_SULIS Length = 410 Score = 165 bits (418), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 116/383 (30%), Positives = 185/383 (48%), Gaps = 33/383 (8%) Query: 184 IGPLHVTSDEPGHFRLFV--DGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 241 +GP H S GH R+FV +G+ I D D + YVHR +EKL+E R Y + L +R Sbjct: 32 VGPQHPGS---GHMRIFVKLNGDIIEDVDLDVGYVHRTVEKLSENR-NYMHLIPLVERPA 87 Query: 242 GICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGF 301 + + Y +VE +G+ VPERAQ +R+ EV R+ SHL LG+ F G +GF Sbjct: 88 ILDSIHMNLGYIIAVEKILGVDVPERAQYLRSFAAEVNRIASHLYGLGILSIFLGHSTGF 147 Query: 302 MQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVD 361 M F RE + + E LTGAR T + GG+RRD+ ++ T + RR +++ Sbjct: 148 MWGFGDREVWVTILEALTGARVTNSYVIPGGVRRDISQEIKDMTLKAISYQRRRLEDWKK 207 Query: 362 VLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHS 421 + P++ R +G + E A + VGP +RASG D R P+ Y L E+ Sbjct: 208 IFFYNPSIRARLENVGVMSKENAIKWGAVGPNLRASGVYYDVRKIEPYGAYDKLDFEIPV 267 Query: 422 EQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGF--------------TY--- 464 + D ++R VR+ E+ ++ +++ + N+P G ++ + F TY Sbjct: 268 YKEGDGLARGLVRLEEIEQSMRILEQIIKNIPEGNILSDRFFKQIPPTRLKKYWETYRRI 327 Query: 465 ----------IPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLR 514 P A+ EA RG+ +++ ++ + K YR R +Y + + + + Sbjct: 328 VLPGYYASFRPPKGEAISRVEAGRGELVYYVVSDGSPKPYRLRMITPSYRSIYVFKELCK 387 Query: 515 GNTVSDAPLIIGSLDPCYSCTDR 537 G+ +D I GSLD DR Sbjct: 388 GSRYADLVSIYGSLDYFPPEADR 410 >UniRef50_B9L172 NADH dehydrogenase I, D subunit n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L172_THERP Length = 409 Score = 165 bits (417), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 122/413 (29%), Positives = 195/413 (47%), Gaps = 33/413 (7%) Query: 153 MDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYR 212 +D+ Q P P +E + ++ V+ +GP H ++ RL ++GE +I D Sbjct: 2 IDFSQ-PTPVILSEVRQITP---TRRELVLNMGPQHPSTHGVLRVRLTLEGETVIACDPV 57 Query: 213 LFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIR 272 + Y+HRG+EKL E+ Y + +DR + +++ Y +VE GIQ PERAQ R Sbjct: 58 IGYLHRGVEKLGESHR-YAQFVPWTDRTDYVAAPSNNLGYVLAVEKLCGIQAPERAQYWR 116 Query: 273 AILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGG 332 I+ E+ R+ SHL+ LG G S + FR RE + + E GAR T + IGG Sbjct: 117 MIMAELTRIASHLVWLGTHALDIGALSVSLYTFRDRELILDIFEKFCGARLTTNMMEIGG 176 Query: 333 IRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGP 392 R++ D R+ + + +++ D+L P RT G+G ++P++A ++ G Sbjct: 177 FSREIPPDLPEMVREFCRYFPKAIRQYEDLLTENPIWLARTKGVGVIEPDVAINYGLTGA 236 Query: 393 MVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNL 452 +R SG D R P++ Y + EV DV R VRI E+ AL +I+ L+ + Sbjct: 237 CLRGSGVNYDVRKAMPYLLYDRVEFEVPLGTHGDVYDRYLVRIEEMRQALRIIEQCLEQV 296 Query: 453 PG-GPLMVEGFTYI--PHRFALGFAE--------------APRGDDIH----------WS 485 P GPLM Y+ PH+ + AE P+G+ H + Sbjct: 297 PTDGPLMAYESPYVIPPHKTVMTTAEDMQRHFIWVIKGFSPPKGEVYHAVEHSKGELGYY 356 Query: 486 MTGDNQKL-YRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + D + YR R R + N +L YM +G ++D +IG++D DR Sbjct: 357 IVSDGSPIPYRVRIRTPDFVNLQSLPYMAQGAMLADIVALIGTIDIVLGSVDR 409 >UniRef50_D2L9H0 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L9H0_9DELT Length = 494 Score = 165 bits (417), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 133/441 (30%), Positives = 196/441 (44%), Gaps = 26/441 (5%) Query: 101 YPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPA 160 YPS+TP P W ERE+ + +G++P G P W L P+R + RP Sbjct: 74 YPSLTPDCPQCHWFERELYEQWGILPDGHP----------W---LKPIRFTTPPGAGRPR 120 Query: 161 PTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGM 220 P Y ++ ++ + V +GP+H EPGHFR GE + + L + HRG+ Sbjct: 121 PAPGVTDY---FQVRGEEVHEVAVGPVHAGIIEPGHFRFQCFGEEVFHLEISLGFQHRGI 177 Query: 221 EKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVER 280 E + V F+ + G HS A+ +E G P R + I LE+ER Sbjct: 178 EAMLAGGPDPRTVHFM-ETAAGDTSIGHSLAHAAVIEALSGRTAPPRGRAIGRAALELER 236 Query: 281 LHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKD 340 L +H +LG GF R+R + M +L G R GL GG D+ Sbjct: 237 LANHTGDLGALAGDVGFLPTLSYCGRIRGDFLNMTALLCGNRFGRGLVRPGGTAFDV--- 293 Query: 341 DMIQTRQLAQQMRREVQELV---DVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRAS 397 D R LA ++ + ++L ++ + R G G+L E A D VGP RA Sbjct: 294 DTGLLRVLAGRLEAARRAAFGAAELLFASSTVLARFEGTGKLTAEKALDLGLVGPPARAC 353 Query: 398 GHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPL 457 G ARD R P G G + + DV +R VR E+ +L+ +D L +LP GP Sbjct: 354 GLARDARRTFPQPGAGARDIALSLHDFGDVYARGLVRRLEMEASLDFLDGLLADLPDGPT 413 Query: 458 --MVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRG 515 ++ G P R A+G E RG+ H ++TG + + ++ ++ NW L LRG Sbjct: 414 RELLPG-RLPPGRLAVGLIEGWRGEIRHVAVTGPDGRFLAYKIIDPSFHNWFGLAQALRG 472 Query: 516 NTVSDAPLIIGSLDPCYSCTD 536 +SD PL S + Y D Sbjct: 473 QQISDFPLCNKSFNLSYCGHD 493 >UniRef50_C6NSM4 NADH dehydrogenase I, B/C/D subunits n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NSM4_9GAMM Length = 565 Score = 162 bits (410), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 149/516 (28%), Positives = 231/516 (44%), Gaps = 42/516 (8%) Query: 60 LFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVR 119 L DER G + + Y L + +RV + A + PS+T A W EREV Sbjct: 54 LTAMDERPSGGGFTLIYHL-FNYAVGELLRLRVPLPAGQETAPSLTDLYANANWYEREVY 112 Query: 120 DMYGLIPVGLPDERRLVLPDDWPDELYPLRKD-SMDYRQRPAPTTDAE-TYEFINE---- 173 D++GL G PD RR++LP W +PLRK+ ++ +RP D E E + E Sbjct: 113 DLFGLRFAGHPDLRRILLPPQW--RGHPLRKEEAIRATERPPIVIDREHLQERLGEYQRS 170 Query: 174 -----LGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRM 228 L D + V+ +GP H + + L + GE I+ D + Y HRG+EK+AE Sbjct: 171 PDGQALDDGETMVLNVGPHHPGTHGILRYILRLRGEEIVAVDPDIGYHHRGVEKIAEGHS 230 Query: 229 GYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNL 288 +N + + +DRV + G Y ++E I VPERA+ IR +L E+ R+ SHL+ L Sbjct: 231 YHNFIPY-TDRVDYLGGVLGEWPYLRAIEKLAAIHVPERAEGIRTLLAELCRISSHLVWL 289 Query: 289 GLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQL 348 G + G FR R +++ E TG R IGG+ DL + L Sbjct: 290 GSYGNDLGTMGPAFYAFRDRAWLLELMERFTGGRLHPQFFRIGGVADDLPEGWRSDLLAL 349 Query: 349 AQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHP 408 +++ + + + + + P RT G+G + E A + ++R++G A D R P Sbjct: 350 LRRIEKGLPDSERLTVENPIFRARTEGVGVVTAEQAERWCATSILLRSTGRAFDLRKAAP 409 Query: 409 FVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGP---------LMV 459 + Y + EV D SR + I E+ ++ ++ D LP GP LM Sbjct: 410 YGLYDRVDFEVPVTTAGDAWSRTWLHIAEIRESIRILRQLADILPEGPTLACDAPLALMP 469 Query: 460 EGFTYIP-----HRF-------------ALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAA 501 + T + H F ALG E+ RG ++ ++ K YR R R Sbjct: 470 KSRTLLDIETLIHHFEQMADAFGPPPGSALGLGESARGLLGYFVVSDGGPKPYRLRVRTG 529 Query: 502 TYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 ++A+ + + RG + D IGSLD + DR Sbjct: 530 SFAHVQMITELGRGLRLPDFIATIGSLDYVLADLDR 565 >UniRef50_A8VSQ7 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=2 Tax=Firmicutes RepID=A8VSQ7_9BACI Length = 371 Score = 161 bits (408), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 106/358 (29%), Positives = 176/358 (49%), Gaps = 6/358 (1%) Query: 184 IGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGI 243 +GP H ++ +L VDGE I A + Y+HRG EKLAE + Y + +DR+ + Sbjct: 14 MGPQHPSTHGVFRLQLEVDGETIQKATPIMGYLHRGSEKLAEGFL-YTQFIPYTDRLDYM 72 Query: 244 CGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQ 303 ++ Y ++E + +VPERA+ +R I +E+ R+ SHL+ G G S F+ Sbjct: 73 NAMTNNYVYCQTIEKLLDWEVPERAEYLRVITMELNRIASHLVWWGTYLLDIGAMSPFLY 132 Query: 304 FFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVL 363 FR RET + ++GAR T+ + IGG++ D + + + ++++ + E ++ Sbjct: 133 AFRDRETILDRLNEISGARMTFNYHRIGGVKWDAPEGWIDNVLETVEELKHNISEFDTLV 192 Query: 364 LSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQ 423 + RT+G+G L E ++ GP+ R SG D R P+ Y +V EQ Sbjct: 193 SGNEVFQARTIGVGVLSKEKVLNWGLSGPLARGSGVEVDVRKTEPYSVYDHFDFDVPVEQ 252 Query: 424 GCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLM-----VEGFTYIPHRFALGFAEAPR 478 DV +R KVRI E++ +L +I+ NLP G ++ P AEA + Sbjct: 253 EGDVYARYKVRIREMHESLKIIEQACKNLPEGDIIHKKGKKIMMIKPPEGEVYTRAEASK 312 Query: 479 GDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 G+ ++++ K YR + R ++ N L+ ML G ++ + I GSLD D Sbjct: 313 GEIGVYAISNGKNKPYRVKLRRPSFVNVSILQDMLIGESIQNLVAIFGSLDVVLGEVD 370 >UniRef50_C1XWY7 Ni,Fe-hydrogenase III large subunit n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XWY7_9DEIN Length = 426 Score = 161 bits (407), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 138/453 (30%), Positives = 201/453 (44%), Gaps = 51/453 (11%) Query: 101 YPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPA 160 +PS+ PA W ERE+ + +GL+P G P L PLR Y ++ Sbjct: 7 FPSLAEEFPALDWFERELWEDHGLVPEGHPS-------------LKPLRNHHSVYSRQAV 53 Query: 161 PTTDAET-YEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRG 219 P Y F G + VP+GP+H EPGHFR V GE I+ + RL Y HRG Sbjct: 54 PKGIVRLPYPFDRVEGLHE---VPVGPVHAGIIEPGHFRFSVLGERILHLEVRLGYQHRG 110 Query: 220 MEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVE 279 +E+L + + + L++R G AH+ A+ +VE A+G++VP RA +R +LLE+E Sbjct: 111 VEQLFQGK-SLEQALLLAERAGGEP-VAHALAFCQAVEAALGVEVPPRAYRLRRVLLELE 168 Query: 280 RLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNL--IGGIRRDL 337 RL HL +L G+ Q +VR E LTG R YG N +GG+ D+ Sbjct: 169 RLFGHLGHLAGLFTDIGYAYAATQVGKVRALLQGQLERLTGHR--YGRNALTVGGVGFDI 226 Query: 338 LKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRAS 397 + ++ R ++ E + + L P + R +G L AR VGP RA Sbjct: 227 DPETQVEVRGALAKLAAEAETHLAAALKHPMVLDRLRYVGTLTQAQARWLGLVGPAARAC 286 Query: 398 GHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGG-- 455 G RD R D Y V S G DV++R +V E+ +D L LP G Sbjct: 287 GLGRDLRQDDAL--YQTFTPVVRS--GGDVLARAQVYAEELRQGFVYLDRFLGALPQGEV 342 Query: 456 ------------PLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATY 503 P E ++ + EA RG+ +W N ++ R + ++ Sbjct: 343 ANGPTTPRVDPVPATAEAYSRV---------EAGRGELFYWVRLRGN-RVERVKIVDPSF 392 Query: 504 ANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 NW L +RG + D P+I S D Y+ D Sbjct: 393 KNWRALELAVRGMGLPDFPIINKSFDLSYAGCD 425 >UniRef50_Q8TY43 Ni,Fe-hydrogenase III large subunit n=1 Tax=Methanopyrus kandleri RepID=Q8TY43_METKA Length = 409 Score = 160 bits (406), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 112/370 (30%), Positives = 183/370 (49%), Gaps = 11/370 (2%) Query: 182 VPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 241 VP+GP H EP +L V GE ++D + Y HRG+EK+ E M + + FL++RVC Sbjct: 29 VPVGPNHPILKEPLRIKLAVRGEEVVDCKVEMGYCHRGIEKIMEG-MPWQKAAFLAERVC 87 Query: 242 GICGFAHSTAYTTSVEN-AMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG 300 GIC AH+ + VE A G P R +R ++ E++R+ SHL+ + ++ Sbjct: 88 GICSHAHNMCFIGGVEKLAEGDPAP-RGLFLRVLVQELDRIQSHLIANAAYFYSIEHETM 146 Query: 301 FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELV 360 F+ RE + E +TG R G N++GG+R D+ +D + + +R +V Sbjct: 147 FVWNMNTRERVLDCIEEITGNRILTGWNVVGGVRMDVTEDQLNNVLETLDAIRDDVITYR 206 Query: 361 DVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASG-HARDTRADHP-FVGYGLLPME 418 + + P ++ R+ G+G + + R + VGP RASG D R P + G P Sbjct: 207 RIAKNDPFIKLRSRGVGVITKDHIRKYRVVGPQARASGVPESDMRLQEPVYPELGFKP-- 264 Query: 419 VHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPR 478 V+ ++G D ++R+ VR +E ++ +I+ +D LP G E H EAPR Sbjct: 265 VYRKEG-DNLARILVRYDECLQSIELIERIVDELPEGRHRRELEVNAGH--VDNRVEAPR 321 Query: 479 GDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGN-TVSDAPLIIGSLDPCYSCTDR 537 G+ ++ + R R + N L + G+ +++DA SLDPC +C +R Sbjct: 322 GELVYDMELAPGGVVKRVTIRTPSVPNIRVLEAIAPGSPSIADAVATYASLDPCVACNER 381 Query: 538 MTVVDVRKKK 547 V+D R+ K Sbjct: 382 FVVIDEREGK 391 >UniRef50_C7DI97 NADH dehydrogenase (Quinone) n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DI97_9EURY Length = 387 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 111/365 (30%), Positives = 184/365 (50%), Gaps = 14/365 (3%) Query: 182 VPIGPLHVTSDEPGHFRLFVD--GENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDR 239 + +GP+H ++ G RL VD G+ I + + ++HRG+EKL E RM Y + +++ Sbjct: 28 INVGPIHPSTH--GVLRLLVDVDGDTIENMTCHIGFLHRGVEKLMENRM-YMQSPSYTEK 84 Query: 240 VCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTG-FD 298 + + Y +VE A+ +V E A+ R I++E +R+ SHL +G C+ G Sbjct: 85 LDYVAPLGWDDLYVHTVELALQKEVKETAKYARVIIMEFQRIASHLFFIGALCNDIGQMF 144 Query: 299 SGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQE 358 + FM FR R+ +K E ++G+R Y +GG+ R L D + +L + + +V+ Sbjct: 145 TMFMWAFRERDAVLKFLEDISGSRMFYVNMRVGGLMRPLPDDFYDRAYKLTEYIEYKVKG 204 Query: 359 LVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPME 418 DV+ +RT GIG + + A DF GP +RASG D R ++P+ Y L + Sbjct: 205 YKDVIDDNSIFMERTKGIGTISKKEAIDFGLSGPNLRASGVEYDVRKEYPYYAYDRLKFK 264 Query: 419 VHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLP------GGPLMVEGFTYIPHRFALG 472 V + D +R K+R E++ ++ +I LD +P G P+ + G P + Sbjct: 265 VPTSNAGDGYARYKMRYEEIFESIKIIRQALDKMPRDNDVVGLPIKLIGPEAKPD-IVIN 323 Query: 473 FAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCY 532 E PRG+ I + M D QK YR R R+ + + L ++ +G +D I G+LD Sbjct: 324 HHELPRGEGIIY-MVPDKQKPYRIRLRSPVFISLSALEHICKGAKFADLFSIAGTLDVVM 382 Query: 533 SCTDR 537 + DR Sbjct: 383 AEVDR 387 >UniRef50_Q6MIR5 NADH-quinone oxidoreductase subunit C/D n=1 Tax=Bdellovibrio bacteriovorus RepID=NUOCD_BDEBA Length = 560 Score = 158 bits (400), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 138/529 (26%), Positives = 229/529 (43%), Gaps = 49/529 (9%) Query: 48 FLYYKQGGWLSVLF---GNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSV 104 L+ ++ G L G D + V Y L K + R+ V A E S+ Sbjct: 42 LLFLRESGQFDFLMDVCGADYPSREKRFDVVYNLFNSKDSS-----RLRVKAQVGEGESI 96 Query: 105 TPRVPA---AVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAP 161 +PA A W ERE DM+G+I G P+ R+++ + +PLRKD Q+ Sbjct: 97 GTAIPAYRGADWFEREAYDMFGIIFEGHPNLRKILTHHQFVG--HPLRKDYDANNQQAC- 153 Query: 162 TTDAETYEFINELG------DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFY 215 T++ F NE G + K + IGP H +DGE I+ + + Y Sbjct: 154 -TNSLPIHFNNEPGSPGDVLNDKYLPLNIGPSHTAMHGTLRVMAEMDGETIVRCNNEIGY 212 Query: 216 VHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAIL 275 +HR EK+AET YN+V +DR+ ++ Y +VE +G+++P +AQ +R IL Sbjct: 213 LHRCFEKMAETH-PYNQVIPYTDRLNYCSAPMNNIGYCKAVERLLGVEIPPKAQAMRVIL 271 Query: 276 LEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRR 335 E+ R+ H + +G G + F F +RE + E L GAR T + IGG+ + Sbjct: 272 AELSRIIDHTIAIGTGAMDLGALTSFFYMFGMREKVYGLFEKLCGARLTVSMTRIGGMAQ 331 Query: 336 DLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVR 395 D + + L +++R+ E+ ++++ QRT + + A + GPM+R Sbjct: 332 DAPEGWFDEVLALVKEIRKGTDEMANMVIDNKIFIQRTKNVCPVSAADAIQWGYTGPMLR 391 Query: 396 ASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGG 455 A G D R P+ GY L +V D+ R VR E+ ++ +I+ N+PGG Sbjct: 392 ACGVNLDLRKAQPYYGYDALDFDVPVGTNGDIYDRYLVRFEEMRQSVRIIEQVCKNVPGG 451 Query: 456 PLM-----------------VEG----FTYI------PHRFALGFAEAPRGDDIHWSMTG 488 +EG F I P EA G+ + ++ Sbjct: 452 DYTIRDKGIVLPEKKDVYGNIEGLMNHFMLIIKGLRPPVGEVYDATEAANGELGFYLVSD 511 Query: 489 DNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + YR + R +A + + +++G ++DA + S++ DR Sbjct: 512 GSANPYRLKVRPPCFAIYQSFPTVVKGAMLADAIATVASMNLIAGELDR 560 >UniRef50_Q6APF2 Related to hydrogenase, component E-formate hydrogenlyase subunit 5 n=1 Tax=Desulfotalea psychrophila RepID=Q6APF2_DESPS Length = 509 Score = 158 bits (399), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 115/426 (26%), Positives = 195/426 (45%), Gaps = 15/426 (3%) Query: 115 EREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSM--DYRQRPAPTTDAETYEFIN 172 ERE+ + YG+ P G P + + + Y KD +Y + P Y F + Sbjct: 94 EREIAEQYGITPDGHPWLKMVRYHKN-----YAGAKDVFGNNYGKENIPGN----YPFFS 144 Query: 173 ELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNE 232 G+ + V +GP+H EPGHFR GE ++ + +L Y HRG+EK+ T + Sbjct: 145 VEGESIHEVA-VGPVHAGIIEPGHFRFQCAGEEVLHLEIQLGYQHRGIEKMLPT-LPQKR 202 Query: 233 VTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLAC 292 + + + G H + ++E GI V A++IR LE+ER+ +H+ +LG Sbjct: 203 FPIICESIAGDTSIGHGLSMCQAIEGLAGISVDRGAKIIRTTALELERICNHIGDLGALA 262 Query: 293 HFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQM 352 F+ F R+R + + ++L+G R GL GG+ + ++ R+ ++ Sbjct: 263 GDAAFNPPAAYFGRIRGEFLNLLQVLSGNRFGKGLVRPGGVTHIMREEQRKLIREKLLEV 322 Query: 353 RREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGY 412 E++ + D++ S ++ R G + E+A+D VG RASG A D R P Y Sbjct: 323 TGEIENICDLIFSAHTVQARFEHTGTVQHEMAKDLGLVGYSGRASGIAYDVRNSFPTECY 382 Query: 413 GLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNL--PGGPLMVEGFTYIPHRFA 470 LP + DV SR VR+ E+ +L +I+ ++ + ++ P+ F Sbjct: 383 RELPANENRVTNGDVNSRGMVRVEEIMHSLKLINILIEESENTASEVHMQDQILAPNAFI 442 Query: 471 LGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDP 530 + E RG+ H +T K+ R++ + ++ NW L LR +SD PL S + Sbjct: 443 ITLNEGWRGEISHCILTDKKGKVQRYKIKDPSFHNWTGLAMSLRNQEISDFPLCNKSFNL 502 Query: 531 CYSCTD 536 Y D Sbjct: 503 SYCGFD 508 >UniRef50_C0Z770 NADH-quinone oxidoreductase chain D n=2 Tax=Bacillales RepID=C0Z770_BREBN Length = 382 Score = 158 bits (399), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 106/358 (29%), Positives = 182/358 (50%), Gaps = 22/358 (6%) Query: 184 IGPLHVTSDEPGHFRLFV--DGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 241 +GP H ++ G FRL V DGE I +A + Y+HRG EKLAE + Y ++ +DR+ Sbjct: 27 VGPQHPSTH--GVFRLVVKIDGETIKEAIPVMGYLHRGTEKLAEN-LTYTQIIPYTDRMD 83 Query: 242 GICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGF 301 + ++ +VE MG+++PERAQ +R I +E+ R+ SHL+ G G F Sbjct: 84 YVSAMTNNYVLCHAVETMMGLEIPERAQFLRLIAMELNRVASHLVWWGTFLLDIGAMGPF 143 Query: 302 MQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVD 361 + FR RET + + L GAR T+ +GG++ D + + ++ Q M++E+ Sbjct: 144 LYAFRDRETILDLFNELCGARMTFNYMRVGGVKWDAPPGWVDKAKEFVQYMKKELNNYHQ 203 Query: 362 VLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHS 421 ++ R +GIG+ D + A D+S G M+R++G D R D P+ Y +V + Sbjct: 204 LVTGNEIFINRLIGIGKFDTKTALDYSLSGVMLRSTGVKWDLRKDEPYCIYDRFEFDVPT 263 Query: 422 EQGCDVISRLKVRINEVYTALNMIDYGLDNLPG-GPLMVE---------GFTYIPHRFAL 471 D ++R +R+ E+ +L +++ L+ P G +M + G TY+ Sbjct: 264 ATEGDCMARYHLRMAEIEQSLRILEQALEQFPSEGEVMGKVPRVIRPPAGETYVR----- 318 Query: 472 GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLD 529 E+PRG+ + + K +R + R ++ N L +L+G +S+ I+GS+D Sbjct: 319 --IESPRGEIGCYIASQGKDKPWRLKFRRPSFTNLQILPKLLQGENLSNMVAILGSID 374 >UniRef50_A8A9X2 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 Tax=Ignicoccus hospitalis KIN4/I RepID=A8A9X2_IGNH4 Length = 540 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 137/479 (28%), Positives = 219/479 (45%), Gaps = 36/479 (7%) Query: 88 ITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDE------RRLVLPDD- 140 + + +VD E PS++ P W E E +M+G+ G PD R+L+L +D Sbjct: 69 VVLSTKVDRENRELPSLSSLYPGVEWHENETYEMFGINFTGHPDYERWGRIRKLLLSEDP 128 Query: 141 --WPDELYPLRKDSMDYRQRPAPT------TDAETYEFINELGDKKNNVVPIGPLHVTSD 192 +P + +PL KDS Y+ P TD E +L V +GP H + Sbjct: 129 RLFPKDRFPLLKDSGGYKDLPKVNWAEIEGTDQEREGLREDL-----TYVYVGPQHPATH 183 Query: 193 EPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAY 252 P F L + GE + D RL YVHRG+E + E + Y +V L DR C I G Y Sbjct: 184 GPVGFLLGLKGEIVEDVIPRLGYVHRGVEWIYEQKE-YLKVIPLLDRQCYIDGIGWEWPY 242 Query: 253 TTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSM 312 ++E M ++V RAQ++R + E+ R+ SHLL +G + F R RE + Sbjct: 243 VMALEEIMDVKVDRRAQLLRILAAELSRIQSHLLYIGSFAENVNHLTAFAWTVRDREVFI 302 Query: 313 KMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQR 372 + E+LTG R T+ GG+ DL + ++ + + ++L++ L P + R Sbjct: 303 NLLEMLTGQRMTFNYLRPGGVAFDLPQGFKDVYEKVVARFHKHFEKLIETTLDNPTVAMR 362 Query: 373 TVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGY-GLLPMEVHSEQGCDVISRL 431 G+ ++ E A + GP +RASG A D R + P+ GY + E D + R+ Sbjct: 363 AEGVAQVSAEDAIKYGWSGPNLRASGVAWDLRINKPYGGYDDGIDFEGAVGSVGDNLDRM 422 Query: 432 KVRINEVYTALNMI--------DYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIH 483 VR E+ +L +I + G + L V F P A G+ ++PRG++ Sbjct: 423 LVRFEEIRQSLKIIRQVLRELTERGQNELGTHLKRVPPFPRKPG-IAYGYHDSPRGENGI 481 Query: 484 WSMTGDNQKLYR---WRC--RAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + + +R WR R+ + + +L+Y+ +G + D SLD C + DR Sbjct: 482 LLVANPSDPKWRTRPWRVHMRSPVFVHTMSLKYLGKGLLLQDFLAFYISLDTCVAEMDR 540 >UniRef50_B1YB08 NADH dehydrogenase (Quinone) n=5 Tax=Thermoproteaceae RepID=B1YB08_THENV Length = 407 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 112/387 (28%), Positives = 188/387 (48%), Gaps = 29/387 (7%) Query: 175 GDKKNNVVPIGPLHVTSDEPGHFRLFV--DGENIIDADYRLFYVHRGMEKLAETRMGYNE 232 G ++ VV +GP H S GH RLFV DG+ I + +VHRG+EKLAE R Y Sbjct: 26 GGERGLVVVVGPQHPGS---GHMRLFVVLDGDIIKEVVPDPGFVHRGVEKLAENR-PYWT 81 Query: 233 VTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLAC 292 + L ++ + + T ++E A+G++ P RA+ +R + E+ R+ +HL +L L Sbjct: 82 LIPLVEKASIMDSMNITLPITLALEKALGLEPPPRAKYLRTAMAELSRIRTHLYDLALLG 141 Query: 293 HFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQM 352 F G + FM F + + ++ +TGAR T + GG+RRD+ ++ + +L ++ Sbjct: 142 IFLGHSTAFMWGFALMDLYAEVFAKITGARTTVAYPVPGGVRRDVKREHIEAVEKLLRKT 201 Query: 353 RREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGY 412 ++++ V L P + R G+G +D + A + VGP RA+G D R P+ Y Sbjct: 202 EEKLRDFKTVFLDNPVTKARLEGVGVVDAKRAAELGVVGPFARAAGIDHDVRKAAPYDAY 261 Query: 413 GLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEG----------- 461 L EV +E+ D ++R+ VR E+Y +++++ L NLP G ++ + Sbjct: 262 PELDFEVVTEKAGDAMARVLVRWREMYVSMDIVRQALKNLPEGDVIDQALLFKNPEYRRE 321 Query: 462 --------FTYI---PHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLR 510 +TY+ P +A A IH TG Q++YR R ++ N + Sbjct: 322 GMGGVLGVYTYMYPEPGEYAAVAEAARGATYIHLWTTG-TQRVYRMRYVTPSWRNLKAMA 380 Query: 511 YMLRGNTVSDAPLIIGSLDPCYSCTDR 537 +RG ++D P + S DR Sbjct: 381 EAMRGERLADMPAVYMSFGYFPPEADR 407 >UniRef50_B0R3U3 NADH dehydrogenase-like complex subunit CD n=16 Tax=Halobacteriaceae RepID=B0R3U3_HALS3 Length = 562 Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 144/543 (26%), Positives = 241/543 (44%), Gaps = 29/543 (5%) Query: 17 AFPGVVLDHAWQTKDQLTV---TVKVNYLPEVVEFLYYKQGGWLSVLFGNDERKLNGHYA 73 A ++ DH + +D L ++ + + +V+ L + G+ + E + + Sbjct: 27 ALEALIEDHVLEREDHLNAPGFVIRADAVQDVLSTLK-TEAGFDHLSCVTAEEHEDRFES 85 Query: 74 VYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDER 133 +Y++ + T+ +++ V + P + P A W ERE D+ G+ P+ Sbjct: 86 IYHLRKYDDPTQ-EVSIIVPTSRDNPVSETAEPVFRTADWHEREAYDLVGVEYDDHPNLE 144 Query: 134 RLVLPDDWPDELYPLRKDSMDYRQ-RPAPTTDAE---TYEFINELGDKKNNV-VPIGPLH 188 R++LPD W + +PL +DY Q +P T E E + D + + + IGP H Sbjct: 145 RILLPDTW--QGHPL---GLDYNQNKPQIVTFDEHKNPLEGHEQAADDSDTMFLNIGPHH 199 Query: 189 VTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDR-VCGICGFA 247 + H +DGE + D + + Y+HR E++A+ +++ DR G G Sbjct: 200 PATHGVLHVETVLDGEQVADVNPDIGYLHRCEEQMAQKGTYRHQIMPYPDRWDYGPGGIL 259 Query: 248 HSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACH--FTGFDSGFMQFF 305 + AY + E+ I VPE AQ++R + E+ R+ H+L LG C + F + FM Sbjct: 260 NEWAYARTAEDLADIDVPEYAQILRTMGGELCRIACHMLALGTFCLDIYGDFTAIFMYAM 319 Query: 306 RVRETSMKMAEILTGARKTYGLNLIGGIRRDLLK---DDMIQTRQLAQQMRREVQELVDV 362 R RE + E LTG R +GG+ D+ + + R ++ + E D+ Sbjct: 320 RDREVVQNILEDLTGQRMMLNYLRLGGVVWDIPEPRAEFFESVRDFLDELPERLDEYSDL 379 Query: 363 LLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSE 422 + S + RTV G LD E A+D+ GP+ R SG D R D P+ Y L +V +E Sbjct: 380 ITSNEIFQARTVNTGVLDYETAKDYGVTGPVARGSGVDYDVRRDDPYGYYPELDWDVVTE 439 Query: 423 QGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGF------TYIPHRFALGF--A 474 G D SRL VR+ EV + +I+ +D L G P T P + Sbjct: 440 DGGDNYSRLLVRMEEVEQSARIIEQCVDLLEGWPEDERDIQANVPRTLKPEAGTETYRTV 499 Query: 475 EAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSC 534 E +G+ + +K R++ R+ ++N L+ M G + D +GSLD Sbjct: 500 EGAKGELGVYIRADGTEKPGRFKIRSPCFSNLSALKEMSTGEYIPDLVATLGSLDVILGE 559 Query: 535 TDR 537 DR Sbjct: 560 VDR 562 >UniRef50_C7LSU9 NADH-ubiquinone oxidoreductase chain 49kDa n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LSU9_DESBD Length = 493 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 124/438 (28%), Positives = 191/438 (43%), Gaps = 26/438 (5%) Query: 100 EYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRP 159 YPS+TP+ P A EREV + +GL+PVG P W L P+R + P Sbjct: 80 SYPSLTPKHPQAHLFEREVWEQHGLVPVGHP----------W---LKPVRHT---FENAP 123 Query: 160 APTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRG 219 A F G + + V +GP+H EPGHFR GE ++ + L Y HRG Sbjct: 124 A------NAPFFRVEGGEVHEVA-VGPVHAGVIEPGHFRFQCAGEEVLHLEIALGYQHRG 176 Query: 220 MEKLAETRMGYNEVTFLS-DRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEV 278 +E + G + T + V G AH+TA+ + +E G++ P RAQ +RA+ LE+ Sbjct: 177 IEDALQN--GPHPATMNQIETVAGDTTIAHATAHASVLEALGGVETPLRAQWLRAMALEL 234 Query: 279 ERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLL 338 ERL +H ++G F ++R + + +L G R GL GG R DL Sbjct: 235 ERLANHTGDMGALAMDVAFLPTSAACGKIRGDFLNLTALLCGNRFGRGLIRPGGCRHDLE 294 Query: 339 KDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASG 398 ++ + + + +V++ + ++ R +G + P A D VGP RA G Sbjct: 295 EERLKTLTERLKAHMADVEQAMAWFWDAASVRVRFRNVGVVHPSQATDIGLVGPAARACG 354 Query: 399 HARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLM 458 RD R DHP + V D+ +R +VR E+ + + L G + Sbjct: 355 LVRDVRFDHPAGWHRFSHSPVAVWPSGDIFARARVRSLEIQRSGRYLFDQLAAPVDGDIT 414 Query: 459 VEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTV 518 P A+ E RG+ H ++T + ++ ++ NW L LRG V Sbjct: 415 AALPAPQPESLAVALVEGWRGEVCHVALTDYFGRFRSYKITDPSFHNWTGLALSLRGTAV 474 Query: 519 SDAPLIIGSLDPCYSCTD 536 SD P+ S + Y D Sbjct: 475 SDFPICNKSFNLSYCGFD 492 >UniRef50_C1D0H4 Putative NADH dehydrogenase (Quinone), subunit D (NADH-quinone oxidoreductase, subunit D) n=1 Tax=Deinococcus deserti VCD115 RepID=C1D0H4_DEIDV Length = 412 Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 117/390 (30%), Positives = 170/390 (43%), Gaps = 46/390 (11%) Query: 184 IGPLHVTSDEPGHFRLFVD--GENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 241 +GP H ++ G RL VD GE + + Y+H G EK E R VT+ + R Sbjct: 33 VGPQHPSTH--GVLRLVVDMDGEYVRKVVPHMGYLHTGFEKTFEHRTYQQGVTY-APRTD 89 Query: 242 GICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGF 301 + F H AY SVE M QVP+RA MIR IL E+ R+HSHL+ +G G + F Sbjct: 90 YLHCFGHELAYVLSVEKLMQAQVPDRASMIRVILHELGRIHSHLVFVGTGLLDLGALTPF 149 Query: 302 MQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVD 361 FR +E+ + + E TG R G +GG+ RD+ +D Q QM R V E + Sbjct: 150 FYAFREKESCVDLFEEATGYRMNQGFFRVGGLSRDVPEDWPGHVAQFLDQMERGVDEYTN 209 Query: 362 VLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHS 421 + + P R G+G + ++A D GP +RASG D R HP+ GY V S Sbjct: 210 LFANNPIFLDRARGVGVIPTDVALDLGLTGPNLRASGVPLDVRKAHPYCGYEAYDFNVIS 269 Query: 422 EQGCDVISRLKVRINEVYTALNMIDYGLDNLPGG-------------------------- 455 D ++R +R+ E ++ +I L L G Sbjct: 270 STDGDSLARFTMRLLEFSESIKIIRQALARLKPGLIKDPNRKISLPPRHELETSMEAVIH 329 Query: 456 --PLMVEGF------TYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWP 507 L+ EGF Y+P E RG+ ++ ++ YR + RA ++ N Sbjct: 330 HFKLVTEGFHPPTGEVYVP-------VEGARGEVGYYIVSDGGSVPYRVKIRAPSFVNLQ 382 Query: 508 TLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 L Y G +D I+ ++DP DR Sbjct: 383 ALEYACVGAQFADLITILATIDPVLGDVDR 412 >UniRef50_C1XJB2 NADH dehydrogenase subunit D n=1 Tax=Meiothermus ruber DSM 1279 RepID=C1XJB2_MEIRU Length = 415 Score = 155 bits (392), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 114/393 (29%), Positives = 181/393 (46%), Gaps = 49/393 (12%) Query: 184 IGPLHVTSDEPGHFRLFVD--GENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 241 +GP H ++ G R+ VD GE I+ + Y+H G EK E R Y + + R+ Sbjct: 33 VGPQHPSTH--GVLRVVVDLSGEQILRLTPHIGYLHTGFEKNMEHRT-YTQCITYTPRMD 89 Query: 242 GICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGF 301 + F+H AY SVE +G QVP RAQ IR +L E+ R+ SHL+ LG G + F Sbjct: 90 YLHSFSHDLAYALSVEKLVGAQVPPRAQAIRVMLNELSRIASHLVFLGTGLLDFGALTPF 149 Query: 302 MQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVD 361 FR RE + + E ++G R + IGG++ DL + + + ++ QM + E Sbjct: 150 FYAFREREAVLDLFEWVSGQRFHHNYIRIGGLKEDLPPEFLGEVKKFIAQMPARIDEYEA 209 Query: 362 VLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHS 421 + +P +R G+ + PE+A + S G +RASG D R +P+ GY +V Sbjct: 210 LFRESPIFYERARGVAVIPPEVAINLSLTGGSLRASGVNYDVRKAYPYAGYETYDFDVPV 269 Query: 422 EQGCDVISRLKVRINEVYTALNMIDYGLDNLPG-GP------------------------ 456 G DV R+ +RI E+ ++ +I ++ L GP Sbjct: 270 LTGGDVFDRMVIRILEMRESVKIIRQAVERLEALGPGPIRDPNPQISLPPRHLLETSMEA 329 Query: 457 ------LMVEGF------TYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 504 L+ EGF Y+P E+ RG+ ++ ++ YR + RA ++ Sbjct: 330 VIYHFKLVTEGFHPALGEVYVP-------TESARGELGYYIVSDGGSMPYRVKVRAPSFV 382 Query: 505 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 N +L Y +G ++D ++I SLDP DR Sbjct: 383 NLQSLPYACKGVQMADMVVVIASLDPVMGDVDR 415 >UniRef50_D1C6X3 NADH dehydrogenase I, D subunit n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C6X3_SPHTD Length = 410 Score = 155 bits (392), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 116/407 (28%), Positives = 189/407 (46%), Gaps = 32/407 (7%) Query: 159 PAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHR 218 P P +E + + ++ V+ +GP H ++ RL ++GE I D + Y+HR Sbjct: 8 PTPVIISEERQISD---TRREMVLNMGPQHPSTHGVLRVRLTLEGETITACDPVIGYLHR 64 Query: 219 GMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEV 278 G+EK+ E++ Y + T +DR + +++ Y +VE +GI+ PERAQ R I+ E+ Sbjct: 65 GVEKIGESKR-YAQFTPWTDRTDYVAAPSNNLGYVLAVEKLLGIEAPERAQYWRMIMGEL 123 Query: 279 ERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLL 338 R+ SHL+ LG G S + FR RE + + E GAR T + IGG R + Sbjct: 124 ARIASHLVWLGTHALDIGALSMSLYCFRERELILDIFEKFCGARLTTNMMEIGGFSRPIP 183 Query: 339 KDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASG 398 R + + +E D+L + P RT G+G ++P++A ++ G +R SG Sbjct: 184 AGLPEMIRDFLKVFPQRQREYEDLLSANPIWLARTRGVGVIEPDVAINYGLTGACLRGSG 243 Query: 399 HARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLP-GGPL 457 D R P++ Y + EV DV R VR+ E+ +L +I+ LD +P GPL Sbjct: 244 VNYDVRKAQPYLLYDRIDFEVPLGTQGDVYDRYLVRMEEMRQSLKIIEQCLDQVPTDGPL 303 Query: 458 MVEGFTYI--PHRFALGFAE-------------APRGDDIHWSMTGDNQKL--------- 493 + Y+ PH L AE +P +++ S+ +L Sbjct: 304 KLAESNYVIPPHETVLTTAEDMQRHFIWVIKGFSPPKGEVYMSIEHSKGELGYYIVSDGS 363 Query: 494 ---YRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 YR R R + N +L Y+ G ++D +IG++D DR Sbjct: 364 PVPYRLRIRTPDFVNLQSLPYLAEGAMLADVVALIGTIDIVLGSVDR 410 >UniRef50_Q1AVI6 NADH-quinone oxidoreductase subunit D n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=NUOD_RUBXD Length = 396 Score = 155 bits (391), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 107/357 (29%), Positives = 175/357 (49%), Gaps = 4/357 (1%) Query: 184 IGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGI 243 +GP H L +DGE I+ D + Y+HR EK+AE R Y V L+DR+ Sbjct: 41 MGPQHPAMHGLLRLILELDGETIVRCDPVMGYLHRCQEKIAENRT-YPAVIPLTDRLDYF 99 Query: 244 CGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQ 303 + Y +VE+ +G+++P RA+ IR ++ E+ R+ SHL ++G G + + Sbjct: 100 ANMHNEHGYCLAVEDLLGVEIPPRAEYIRVLMCELMRIASHLPSIGFLLLELGAFTPILY 159 Query: 304 FFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQ-ELVDV 362 FR RE E +TGAR + IGG++ DL D + + + + + ++ + +D+ Sbjct: 160 AFRERERIQNFFEAVTGARMMFHYIRIGGVKADLPPDIPEKIWEYVEGLEKRIKPDFIDL 219 Query: 363 LLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSE 422 + +RT GI RL E A + GP +R +G A D R D+P+ Y L EV ++ Sbjct: 220 IEGNEIFIERTRGISRLTQEEAIELGLTGPPLRCTGVAFDVRRDYPYSVYPELDFEVVTD 279 Query: 423 QGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLM--VEGFTYIPHRFALGFAEAPRGD 480 DV + +VRI EVY ++ +I L+ +P G +M V P G E PRG+ Sbjct: 280 TAGDVEASYRVRIKEVYESIKIIRQCLEKMPEGEVMGDVGRRVRPPEGEGFGRVEGPRGE 339 Query: 481 DIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 ++ + YR R ++ N L+ + G+ + D I+G +DP D+ Sbjct: 340 FAVHVVSDGSDTPYRVHYRDPSFVNMQLLQEKMPGHYLPDIMPIMGLVDPVSGGWDK 396 >UniRef50_A3CUR5 NADH dehydrogenase (Ubiquinone) n=3 Tax=Methanomicrobiales RepID=A3CUR5_METMJ Length = 362 Score = 154 bits (390), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 102/359 (28%), Positives = 172/359 (47%), Gaps = 8/359 (2%) Query: 182 VPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 241 +P+GP+H EP + GE ++ + L Y+ +G+E++ R + EV FL++RVC Sbjct: 9 IPLGPMHPCWKEPVRLKCETAGERVLKTELELGYMKKGIERIMRGR-PWQEVMFLAERVC 67 Query: 242 GICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGF 301 GIC H+ + ++E I VP RA +R ++ E++R+ SH+L C+ ++ Sbjct: 68 GICSVVHNMVFIETMEEISDIPVPPRAAYLRVVVNELDRMASHILANFSYCYTIEHETLA 127 Query: 302 MQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVD 361 M +RET + E +TG+R + GG+R DLL +D ++ E++ V Sbjct: 128 MYLLNIRETVLDNLERITGSRINTAYMIPGGVRFDLLPEDAAALLADLAKVEEEMKRYVR 187 Query: 362 VLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASG-HARDTRADHPFVGYGLLPMEVH 420 + + P + R+ GIG + E A VGP RASG D R HP Y L Sbjct: 188 IFETGPLIALRSKGIGYMSREEAIRAHTVGPTARASGVEDSDLRLRHP--TYRELGFTQI 245 Query: 421 SEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGD 480 + D +R+ VR EV+ ++++I ++ LP GP+ G G EAPRG+ Sbjct: 246 TRTEGDNFARVMVRFQEVFQSIDLIRKCVETLPEGPIRGGGLCKAGEASYAG--EAPRGE 303 Query: 481 DIHWSMTGDNQKLYRWRCRAATYANWPTLRY--MLRGNTVSDAPLIIGSLDPCYSCTDR 537 + T + ++ R + N + ++ +++D S DPC +C +R Sbjct: 304 LTYTIKTDEYGRVVDIAIRTPSIMNIEACAHSMIVDAASIADVTSTFISSDPCIACNER 362 >UniRef50_Q2K3U2 NADH-quinone oxidoreductase subunit D 2 n=7 Tax=Proteobacteria RepID=NUOD2_RHIEC Length = 404 Score = 154 bits (389), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 106/383 (27%), Positives = 178/383 (46%), Gaps = 31/383 (8%) Query: 184 IGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGI 243 +GP H ++ L +DGE + D + Y+HRG EKLAE+ Y ++ L+DR+ + Sbjct: 24 LGPQHPSTHGVLRLVLELDGEFVERVDPHIGYLHRGTEKLAES-FTYTQIFPLTDRLDYL 82 Query: 244 CGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQ 303 C +++ A+ +VE +GI+ P RAQ IR ++ E+ R+ HLL G G + + Sbjct: 83 CPPSNNLAFALAVEKLLGIEAPIRAQYIRVMMAELARISGHLLITGALPMDLGAMTALLY 142 Query: 304 FFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVL 363 R RE M + E++TGAR +GG+R DL + R+ +++ +L Sbjct: 143 VMREREMIMDLLEMITGARMHTSFCRVGGVREDLPDGFFPKIREFCDIFPNRIRDYERLL 202 Query: 364 LSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQ 423 RT GIG + E A D GP +RASG D R D P+ Y L V + Sbjct: 203 EDNRVFLNRTKGIGVISAEDAVDLGLSGPNLRASGVDWDIRRDEPYEIYDRLDFNVITRD 262 Query: 424 GCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVE----------------------- 460 D +R + R++E+ ++ +I+ +D +P GP ++ Sbjct: 263 EGDCYARWRCRVDEMRESMRIIEQCIDQMPEGPFQIDMPTIAFPLDKDRVHCSMEALIQH 322 Query: 461 ------GFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLR 514 GF +P EAP+G+ + ++ + K +R + RA ++ N L + Sbjct: 323 FDLSAYGFK-VPKGEVYSAIEAPKGELGFYIISDGSPKPFRMKVRAPSFVNLQALFGVTN 381 Query: 515 GNTVSDAPLIIGSLDPCYSCTDR 537 ++D ++GSLDP + D+ Sbjct: 382 ARYLADMIAVLGSLDPVMAEVDK 404 >UniRef50_Q2S5J0 NADH-quinone oxidoreductase subunit D n=5 Tax=Bacteria RepID=NUOD_SALRD Length = 451 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 115/410 (28%), Positives = 189/410 (46%), Gaps = 39/410 (9%) Query: 158 RPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFV--DGENIIDADYRLFY 215 +P T +E NE+ ++ IGP H + G R V DGE I + + Y Sbjct: 51 KPPATQRSEVDPLENEM------ILNIGPQHPATH--GVLRCVVKMDGETIEKSVLDIGY 102 Query: 216 VHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAIL 275 +HRG+EKLAE + Y E +DR+ + ++++ A+ +VE I+VPERAQ IR I+ Sbjct: 103 LHRGIEKLAEHKT-YQEFMPYTDRMDYLSPYSNNVAWCLAVEKLADIEVPERAQWIRMIM 161 Query: 276 LEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRR 335 E+ R+ SH L LG+ G SGF+ F+ RE + + + GAR T + IGG+ Sbjct: 162 SELARISSHCLWLGVGMMDAGAVSGFVWTFQEREEIYSIMDEVAGARFTVSHSRIGGVAN 221 Query: 336 DLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVR 395 D + R + +L +R G+GR+ E A + GP +R Sbjct: 222 DFSPRAIEMIRDFVDTFPDRIAGWEGLLNKNRIWVERNKGVGRVTKEEALELGLTGPNLR 281 Query: 396 ASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGG 455 SG D R P++ Y + + + D ++R +R++E+ ++ +I+ LD + G Sbjct: 282 GSGVPYDVRRFEPYLKYDEVDFTIPVREEGDCLARYFLRLDEMKQSVRIIEQCLDRMTEG 341 Query: 456 PL---------------------MVEGFTY-----IPHRFALGF--AEAPRGDDIHWSMT 487 P+ M+ F Y +P + A + E P+G+ + + Sbjct: 342 PIRSDDAKEAYPSKEEVYYSMEGMIHDFMYTDVGTVPPKGAHSYHAIEGPKGELGFYLTS 401 Query: 488 GDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + +R R A ++ N + +ML G V+D +IIGSLDP D+ Sbjct: 402 DGTGRPWRVRINAPSFTNLQAMEHMLEGEMVADTVVIIGSLDPVMGEADK 451 >UniRef50_A4XCQ7 NADH-quinone oxidoreductase subunit D 2 n=22 Tax=Actinomycetales RepID=NUOD2_SALTO Length = 388 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 116/383 (30%), Positives = 188/383 (49%), Gaps = 24/383 (6%) Query: 162 TTDAETYEFINELGDK-----KNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYV 216 TTDA+ E G + V+ IGP H ++ RL +DGE ++ A+ + Y+ Sbjct: 5 TTDADLRELTVGTGAGGEQLGTDMVLNIGPQHPSTHGVLRLRLVLDGERVVSAEPVVGYM 64 Query: 217 HRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILL 276 HRG EKL E R Y ++ L++R + FA+ +VE +G++VPERA +R L Sbjct: 65 HRGAEKLFEVR-DYRQIIVLANRHDWLSAFANELGVVLAVERLLGMEVPERATWLRMALA 123 Query: 277 EVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRD 336 E+ R+ +HL+ LG G + FR RET E ++G R Y N +GG++ + Sbjct: 124 ELNRVLNHLMFLGSYPLEIGAITPMFYAFRERETLQTALEEVSGGRIHYMFNRVGGLKEE 183 Query: 337 LLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRA 396 + + R ++RR + +L +++ RTVG+G L A + GP+ RA Sbjct: 184 VPAGWTGRARAAIGEVRRSLPDLDNLIRRNEIFLARTVGVGVLSAAQAAAYGASGPVARA 243 Query: 397 SGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLP--G 454 SG D R D P++ Y L + V + D SR +V +++VY +L++ + LD + Sbjct: 244 SGLDLDLRRDEPYLAYDQLDVPVVTRTAGDCHSRFEVLLDQVYVSLDLAEQCLDRVDRLT 303 Query: 455 GPLMV---------EGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYAN 505 GP+ EG TY + E P G + ++ ++ + +R + R A+YAN Sbjct: 304 GPINTRLPKVLKAPEGHTY-------AWTENPLGINGYYLVSRGEKTPWRLKLRTASYAN 356 Query: 506 WPTLRYMLRGNTVSDAPLIIGSL 528 L +L G V D I+GS+ Sbjct: 357 VQALATLLPGCLVPDLVAILGSM 379 >UniRef50_UPI00016C492D NADH dehydrogenase subunit D n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C492D Length = 409 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 110/386 (28%), Positives = 176/386 (45%), Gaps = 33/386 (8%) Query: 184 IGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGI 243 GP H + L +DGE I+ A + Y+H G EKL E + +N+ + DR+ I Sbjct: 25 FGPQHPATHTTLRLILTLDGETIVKAVPDIGYLHSGFEKLGED-LDFNQYVTIVDRMNYI 83 Query: 244 CGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQ 303 FA+ A+ T+VE +GI++ R + +R IL E+ R+ HLL +G A G +GF+ Sbjct: 84 SPFANECAWFTTVEKLIGIELTPRCKYLRTILAELARISDHLLCVGAAALDLGALTGFLY 143 Query: 304 FFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVL 363 F RE + E +G R +GG+ D+ D + R + R+ ++ +L Sbjct: 144 AFNAREKVYNIMEAASGQRFHPSYCRVGGLMADVNDDVVALIRDFVKTFRKVHADICRLL 203 Query: 364 LSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL--PMEVHS 421 RT GIG L E A + S GP+ RASG RD R D P++ Y L ++ Sbjct: 204 NRNRIFIDRTKGIGVLSKEDAINTSCSGPVARASGVVRDLRKDEPYLAYKELSGAFKIVC 263 Query: 422 EQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVE----------GFTY------- 464 +G D +R VR+ E+ + +I+ ++NLP GP+ V+ TY Sbjct: 264 GKGGDCYNRYLVRMGEMLESWKIINAAVENLPSGPVNVDLNDKLTIPDKNATYRSIEGLI 323 Query: 465 -------------IPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRY 511 P G E G+ + + K +R R R ++ ++ Sbjct: 324 QHFELFMWNRRWETPVEEVYGANETANGELGFYLVADGTGKAFRARTRPPSFIHFAVFPM 383 Query: 512 MLRGNTVSDAPLIIGSLDPCYSCTDR 537 M+ G+ +SD P ++GSL+ + DR Sbjct: 384 MMEGHQISDVPAVLGSLNIIAAELDR 409 >UniRef50_B9L625 NADH-ubiquinone oxidoreductase n=3 Tax=Epsilonproteobacteria RepID=B9L625_NAUPA Length = 549 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 132/503 (26%), Positives = 216/503 (42%), Gaps = 41/503 (8%) Query: 64 DERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYG 123 DE K+ +Y ++ + W+ V +E D E S+TP +P+A W E E +G Sbjct: 59 DENKIEVNY---FLEDLFGKKNVWLKVDIERDLENCEIDSITPLMPSANWHELEAYSTFG 115 Query: 124 LIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELG-------- 175 + G PD R ++ D+ + +P RKD D++ + + IN++ Sbjct: 116 VKFKGHPDLRYFLISRDYYGK-FPFRKD-FDWKAH-----EENLIQNINDITEEYFEEYE 168 Query: 176 --------DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETR 227 + V+ GP H S P +++ +GENI + + YV R +E LAE R Sbjct: 169 EHEEKLGHEGSRTVLNWGPTHPASG-PIRLKVYTNGENIEKIEPDIGYVWRALEHLAE-R 226 Query: 228 MGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLN 287 + +R+C + Y+ +VE G ++ E A+ +R IL E R+ SHL++ Sbjct: 227 KDFIGTIVAVERICFMDNPNPMICYSQAVEEIAGKEITEFAKYMRVILGETGRIASHLIS 286 Query: 288 LGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDL--LKDDMIQT 345 LG G + M +RE + + E +GAR GG+R L K Sbjct: 287 LGGFFGTMGLHTFMMWCLDIREYFLDVLEDYSGARIATACVEPGGVRYPLNDYKAWFEGI 346 Query: 346 RQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRA 405 + ++ ++ D+ + P M R G G + ++ GP+ RASG D R Sbjct: 347 NKAIKKFEDTKADITDIFMKNPLMNTRAKGNGVFTLDDVAEYYLAGPIARASGAKIDVRI 406 Query: 406 DHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVE----- 460 D P+ Y L ME + + D RL + E+ A+++I + + G E Sbjct: 407 DEPYAAYDKLEMEYATCENGDARDRLYIIFKELEQAMDLIKQAMAKIEEGIEAGEMDPKK 466 Query: 461 -GFTYIPHRFALGFA----EAPRGDDI-HWSMTGDNQKLYRWRCRAATYANWPTLRYMLR 514 +P R G A E RG+ + H + YR + +A + + L +LR Sbjct: 467 DHLVKMPKRMPAGEAVSRIEWARGEILMHLVTQEKSTSPYRLKIKAPSVNHTMMLDKLLR 526 Query: 515 GNTVSDAPLIIGSLDPCYSCTDR 537 G T+SD PL+ GS+ C DR Sbjct: 527 GKTLSDIPLLYGSMHICQGDLDR 549 >UniRef50_Q7NI12 NAD(P)H-quinone oxidoreductase subunit H 1 n=3 Tax=cellular organisms RepID=NDHH1_GLOVI Length = 393 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 116/385 (30%), Positives = 176/385 (45%), Gaps = 31/385 (8%) Query: 181 VVPIGPLHVTSDEPGHFRLFV--DGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSD 238 V+ +GP H + G RL V DGEN++D L Y+HR MEK+AE+R + +++ Sbjct: 12 VINLGPHHPSMH--GVLRLIVTLDGENVVDCVPVLGYLHRSMEKIAESRTIIQYLPYVT- 68 Query: 239 RVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFD 298 R + + E G+QVP RA+ IR I+LE+ R+ SHLL LG G Sbjct: 69 RWDYLATMFTEAITVNAPEQLAGVQVPRRARYIRVIMLELSRIASHLLWLGPFMADIGAT 128 Query: 299 SGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQE 358 S F FR RE + E TG R + +GG+ DL + + R + ++ E Sbjct: 129 SPFFYIFREREMIYDLFEAATGMRMMHNYFRVGGVAVDLPYGWVDKARDFCNYLPPKIDE 188 Query: 359 LVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPME 418 ++ + P R G+G + E A ++ GPM+RASG D R + Y L Sbjct: 189 YERLITNNPIFRGRVEGLGYIGREDAINWGLSGPMLRASGVNWDLRKVDHYEIYDELDWN 248 Query: 419 VHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGP---LMVEGFTYIPHRFALGF-- 473 V + G D ++R VRI E+ ++ MI LD LPGGP L + + P GF Sbjct: 249 VAWDTGGDTLARYVVRIQEMRESVKMIRQALDQLPGGPYENLEAQRLSGGPKSEWNGFDY 308 Query: 474 ---------------------AEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYM 512 EAP+G+ + + D+ +RW+ R + N L + Sbjct: 309 QFIGKKSSPTFKMPRGEHYVRVEAPKGELGVYLIGDDSTFPWRWKIRPPGFINLAVLPKL 368 Query: 513 LRGNTVSDAPLIIGSLDPCYSCTDR 537 ++G ++D I+GS+D DR Sbjct: 369 VQGTKLADLMAILGSVDIIMGEVDR 393 >UniRef50_B3E6C1 NADH-ubiquinone oxidoreductase chain 49kDa n=2 Tax=Deltaproteobacteria RepID=B3E6C1_GEOLS Length = 506 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 124/456 (27%), Positives = 193/456 (42%), Gaps = 31/456 (6%) Query: 92 VEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLP--DERRLVLP-----DDWP-D 143 ++ N E+PS+ + P ERE+ + G+ VG P R V D W Sbjct: 70 MQTICNGTEFPSIAVQCPQLQLFEREIAEQCGIRFVGHPWFKPVRFVHSAVRGHDAWGRA 129 Query: 144 ELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDG 203 + P++ M+Y + E +E V +GP+H EPGHFR G Sbjct: 130 DDQPIQVGVMEYYR----VEGEEIHE------------VAVGPVHAGVIEPGHFRFQCHG 173 Query: 204 ENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQ 263 E + + L Y HRG+E+L + + + + G H AY +E+ Sbjct: 174 EQVFHLEISLGYQHRGIEQLL-LNGPHPQTLRQMEAIAGDTSIGHGLAYCMVLESLSKSH 232 Query: 264 VPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARK 323 P A +R I LE+ERL +H +LG G+ R+R + M+ + G+R Sbjct: 233 PPATAHALRGIALELERLANHTGDLGAIAGDVGYLPTASFCGRIRGDFLNMSAFICGSRF 292 Query: 324 TYGLNLIGGIRRDLLKDDMIQTRQLAQQM---RREVQELVDVLLSTPNMEQRTVGIGRLD 380 GL GG L D Q +L ++ R E+ +++L +TP++ R G G + Sbjct: 293 GRGLLKPGGTVFGL---DQAQREELQNRLATGRAELTSAIELLWNTPSVMSRLEGTGVVS 349 Query: 381 PEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYT 440 E A + VGP RA G RD R+D+PF Y + + + + DV SR VR E Sbjct: 350 AESAVEMGLVGPAARACGLKRDVRSDYPFGIYRMAQVPIATAHHGDVCSRSSVRWEECQK 409 Query: 441 ALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRA 500 +L+ L LP G E + + E RG+ H ++T + +++ Sbjct: 410 SLDFCVEQLRQLPKGAHAAELKPLQGDQLTVALTEGWRGEICHLAITDSAGRFRQYKITD 469 Query: 501 ATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 ++ NW L LR +SD PL S + Y D Sbjct: 470 PSFHNWQGLAMALRNEQISDFPLCNKSFNLSYCGFD 505 >UniRef50_Q1IS59 NADH-quinone oxidoreductase subunit D 1 n=2 Tax=Acidobacteria RepID=NUOD1_ACIBL Length = 381 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 107/377 (28%), Positives = 175/377 (46%), Gaps = 7/377 (1%) Query: 163 TDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEK 222 +D E F+ D V+ +GP H ++ L +DGE ++ + + Y+HRG+EK Sbjct: 10 SDLENKTFL----DSNELVLNMGPQHPSTHGVLRVILKLDGERVLGTECVIGYLHRGVEK 65 Query: 223 LAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLH 282 +AE R Y + DR+ + ++ Y +VE + +Q P RAQ +R IL E+ RL Sbjct: 66 IAENRT-YVQFNPYVDRMDYVAAVSNGLGYCEAVEKLIDVQAPPRAQFLRVILTELNRLA 124 Query: 283 SHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDM 342 SH++ LG G + FR RE +K+ E GAR T IGG + + Sbjct: 125 SHMVWLGTHALDIGALTPLFYTFRDREEVLKIFEKYCGARLTTHAFRIGGCIYEAYEGFE 184 Query: 343 IQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARD 402 ++ + E +L QRT GIG L+ + GP++RA+G D Sbjct: 185 KDVLDYCDKLGPRIDEYEGLLTGNRIWLQRTKGIGILNAADCKALGVTGPVLRAAGVKWD 244 Query: 403 TRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLM--VE 460 R P+ Y + +V + + D R VR+ E+ ++ ++ ++ LP GP M V Sbjct: 245 LRKAQPYAAYDQVDFDVPTGENGDTFDRYMVRMQEMRQSIRILRQAVEKLPAGPTMAKVP 304 Query: 461 GFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSD 520 P EAP+G+ ++ ++ + + YR R R ++ N L M+RG ++D Sbjct: 305 KVLKPPVGRIYHSIEAPKGELGYFIVSDGSLQPYRVRVRPPSFVNLQALDKMVRGALIAD 364 Query: 521 APLIIGSLDPCYSCTDR 537 +IG+LD DR Sbjct: 365 VVAVIGTLDIVLGEVDR 381 >UniRef50_A6Q6W4 Ni-Fe hydrogenase, large subunit HycE n=3 Tax=Epsilonproteobacteria RepID=A6Q6W4_SULNB Length = 455 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 117/448 (26%), Positives = 218/448 (48%), Gaps = 18/448 (4%) Query: 89 TVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPL 148 T R + P ++ + P+A+W ER++ D +G++ D+R L+ + +P ++P+ Sbjct: 25 TQRETISKENPVIRTLAKKHPSAIWFERKMSDDFGIVIEDAFDKRPLLHQERFPKAIHPM 84 Query: 149 RKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIID 208 +K +++ + Y++ GD V +GP+H EPGHF GE+++ Sbjct: 85 QKA---FQKNTLDFAEFTPYKYEAIQGDGVFQV-SVGPIHAGIIEPGHFHFSQAGEDMLH 140 Query: 209 ADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERA 268 + R FY +RG+EK+ E + E + +R+ G A+ TA+ V A G+++P Sbjct: 141 QEVRHFYKYRGIEKMLEGKT-LLEAKPVIERISGNESIAYQTAWRDIVCQAAGMELPLSL 199 Query: 269 QMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLN 328 + A LLE+ER+ HL +LG + GF + ++ E + + + +TG R +G + Sbjct: 200 RKRHAFLLEMERIIHHLTDLGFIPNDAGFGAALAFASKLSEDARRQLQNVTGHR--FGFD 257 Query: 329 LIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFS 388 IG + L D+ +++++ ++ P++ R G L + Sbjct: 258 AIGFENKVL---DISSLYDYLDGLQKDIAFFETWIMDIPSLWDRFDTTGILQKADVLKYD 314 Query: 389 NVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYG 448 VG + RASG + D R++ ++ +G E+ +EQ DV +R KVR+ EV ++ M+ + Sbjct: 315 TVGVVARASGFSLDRRSEPFYLEHGF---EIQTEQSGDVAARFKVRLQEVKNSIVMMKHF 371 Query: 449 LDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPT 508 L+ + +E I FAE+ G ++ ++ + + R+ R ++ NW T Sbjct: 372 LEE-DDTHIDIEK---IKDGDYTAFAESSLG-ELFMNIEIKDGVIERFFVRDPSFMNWQT 426 Query: 509 LRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 L M+ N ++D PLI S D Y+ D Sbjct: 427 LHLMMPNNIIADFPLINKSCDLSYAGND 454 >UniRef50_B5YKI5 NADH-quinone oxidoreductase subunit D 1 n=12 Tax=Bacteria RepID=NUOD1_THEYD Length = 397 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 110/396 (27%), Positives = 188/396 (47%), Gaps = 31/396 (7%) Query: 172 NELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYN 231 N++ K V +GP H + L ++GE I + Y+HRG+EKL+E + Y Sbjct: 3 NKIKTVKELTVNMGPQHPATHGVLRLVLELEGEVIKKCIPYIGYLHRGVEKLSED-LTYV 61 Query: 232 EVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLA 291 + ++DR+ + ++ + +VE MGIQ+PERA+ IR I+ E+ R+ SHL+ + Sbjct: 62 QSLPITDRMDYLSSMVNNVGFCVAVEKLMGIQIPERAKFIRTIMGEMARICSHLVWIATH 121 Query: 292 CHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQ 351 G + F+ R RE +++ E++TGAR T +GG+R D+ + + +T + ++ Sbjct: 122 ALDIGAMTVFLYAMRDREYLLELFEMVTGARLTVSYPRVGGVRCDVNNEFLDKTYKFIEE 181 Query: 352 MRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVG 411 R+V+E ++ +RT G+G + E A ++ GP +R SG D R P+ Sbjct: 182 FPRKVEEYETLIDRNRVWLKRTKGVGVISAEEAINWGLTGPTLRGSGVYYDVRKFFPYDA 241 Query: 412 YGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGF--------- 462 Y + EV + D+ R K R+ E + +I ++ LP G ++ E Sbjct: 242 YDKVDFEVPLGKNGDIYDRYKCRMLEFRQSAKIIKQCIERLPDGSILAENALRIRMPESP 301 Query: 463 -----------TYIP--------HRFALGFA--EAPRGDDIHWSMTGDNQKLYRWRCRAA 501 YI +F +A EAPRG+ + + ++ K YR R RA Sbjct: 302 LKIDKKDIIFDVYIEDKQIQEFIQKFTEVYASVEAPRGELGFYIVCDNSSKPYRMRVRAP 361 Query: 502 TYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 ++ + L + G+ V+D IGS+D DR Sbjct: 362 SFVHAGVLPKLCEGSLVADVIANIGSIDIVLGECDR 397 >UniRef50_Q64DY8 F420H2-quinone oxidoreductase 45 kD subunit n=8 Tax=Archaea RepID=Q64DY8_9ARCH Length = 788 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 136/484 (28%), Positives = 221/484 (45%), Gaps = 69/484 (14%) Query: 98 KPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDER-RLVLPDDWPDELYPLRKD-SMDY 155 +PE PS+T +A + ERE+ D +G+ G + + +L D PD PLRKD ++ Sbjct: 296 EPEIPSLTSLWESANYSERELHDFFGVKFKGNEGMKGKFLLAPDTPDT--PLRKDFKLEE 353 Query: 156 RQ----RPAPTTDAET-------------------------YEFINELGDKKNNVVP-IG 185 Q P T T YE + + +K + V IG Sbjct: 354 EQYTIEEGVPLTPTITPPHYMPPSSSLSYSESELEDLKMPAYEDVLKEAEKNDEFVAFIG 413 Query: 186 PLHVTSDEPGHFR--LFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGI 243 P H S GH R + + G+ I D YVHR MEK+AE R+ Y + L++R Sbjct: 414 PHHSGS---GHLRWVMRMKGDIIKDVIPDPGYVHRSMEKIAENRL-YIQNVPLTERPNIS 469 Query: 244 CGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQ 303 + Y ++ENA+GI+VPERA+ IR I+ E+ R+ + ++G+ F G +GFM Sbjct: 470 DPINMNLGYVRAIENALGIEVPERAKYIRTIMAELSRIGAFFYDMGIFPLFMGHSTGFMY 529 Query: 304 FFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVL 363 F +RE +++ +TG+R T + GGIRRD+ D + +TR+ + + +++ ++ Sbjct: 530 SFAIREMVLELMVRMTGSRCTPSFIVPGGIRRDIPDDVLDRTRKFTTAIHKRLKKYENIF 589 Query: 364 LSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQ 423 + P + R +G L E A VGP +RASG D R P+ Y L E + Sbjct: 590 VYNPVLISRMKEVGVLTREEAIRCGIVGPFLRASGVEYDVRKAEPYEVYDKLDWEATTGD 649 Query: 424 GCDVISRLKVRINEVYTALNMIDYGLD---NLPGGPLMVE--------------GFTY-- 464 D + R+ R+ E+ ++ ++ +D +P G ++ E G+ Y Sbjct: 650 AGDCLGRIFGRLEEMKQSVEIVRQAVDAVQEMPRGGVISEEILGDYKEASDDIRGYLYNV 709 Query: 465 -----IPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYML---RGN 516 +P EA RG + +S+ D + +R R T W LR ++ +G Sbjct: 710 YGDLVLPKGEWTSVTEAARG-TVLYSIISDGESNVPYRVRIITPC-WMNLRGIIEASKGE 767 Query: 517 TVSD 520 V+D Sbjct: 768 RVAD 771 >UniRef50_A0LSU1 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LSU1_ACIC1 Length = 499 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 122/450 (27%), Positives = 213/450 (47%), Gaps = 22/450 (4%) Query: 89 TVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPL 148 + V V YP+++ VPAA W ER++ D++GL P+G P L+LP L Sbjct: 53 AIDVAVPRGSTSYPALSAVVPAASWYERKIHDLFGLEPLGHPRLDPLILP------LREA 106 Query: 149 RKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIID 208 + + ++ P + + + +P GP+ E + + GE+I Sbjct: 107 QPRPLPGQRSAIPPLTPDEAAIPSRVLGHGVFTIPHGPVRSGVYESVEYLVETPGEDIPY 166 Query: 209 ADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERA 268 R+F HRG+E+ E + ++ L++RV GI AH+ A+ +VE+ G+ R Sbjct: 167 VGIRVFAKHRGIERRFED-LDVSDGVLLAERVEGIASVAHALAFCHAVEDLAGVIPSPRD 225 Query: 269 QMIRAILLEVERLHSHL-LNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGL 327 + +R I E+ER+ +HL + L LA G +F +E +++ G+R G+ Sbjct: 226 RSVRVIFAELERIANHLDVALKLA-DAAGLAVAVSRFGYHKERILRLIGAACGSRFGRGV 284 Query: 328 NLIGGIRRD-LLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARD 386 + GGI + + + + TR + REV D+L+ TP+ R G G LDP +AR Sbjct: 285 VVPGGIGCEPAISPNALLTRL--DDILREVFADADLLMQTPSFLDRLRGTGPLDPALARR 342 Query: 387 FSNVGPMVRASGHARDTRADHPFVGYGLLPM--EVHSEQGCDVISRLKVRINEVYTALNM 444 +GP+ RASG D R P+ Y LP V S G D ++RL++R +E+ ++ + Sbjct: 343 HGALGPIGRASGFDDDDRWHRPYDEYSDLPQFPAVSSGSG-DALARLEIRWSEIRSSAEL 401 Query: 445 IDYGLDNLPGGPLMVEGFTYIPHRF------ALGFAEAPRGDDIHWSMTGDNQKLYRWRC 498 I + ++ +P +G+AEAP+G ++ + + D+ ++ R Sbjct: 402 IRQAVAHIAALSAPTAEPADVPAAIDRISGRGIGWAEAPQG-EVVYVVECDDGRISRCAP 460 Query: 499 RAATYANWPTLRYMLRGNTVSDAPLIIGSL 528 R+A++ N + G+ ++D P I S Sbjct: 461 RSASFHNLVLFHDVFAGDILTDFPFIEASF 490 >UniRef50_A5UXK3 NADH-quinone oxidoreductase subunit D 1 n=20 Tax=cellular organisms RepID=NUOD1_ROSS1 Length = 374 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 108/369 (29%), Positives = 182/369 (49%), Gaps = 16/369 (4%) Query: 182 VPIGPLHVTSDEPGHFRLFV--DGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDR 239 + IGP H ++ G FR+ V DGE I+D Y+HR E+LAE + + +DR Sbjct: 9 INIGPQHPSTH--GVFRMIVTVDGETIVDLKPVFGYLHRNHEQLAEVSTYIQSMPY-TDR 65 Query: 240 VCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTG-FD 298 + A++ A +VE GI VP+RA+ IR +++E+ R+ +H +G + G + Sbjct: 66 LDYFNSMANNHALALAVEKLAGISVPQRAEYIRVLMVELTRILNHASAVGFLLNDMGAWQ 125 Query: 299 SGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQE 358 + M R RE + + E+ +GAR GG+ RDL + + Q ++L Q + E Sbjct: 126 TPLMFGMREREKILDLFEMASGARMMCNYFRFGGVWRDLPPEFIPQLKELMQGLPSFFDE 185 Query: 359 LVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPME 418 +L + RT+ +G L E+A +S GP++RASG D R P+ Y L + Sbjct: 186 FERLLKENEILLSRTINVGVLPKEVAVSYSVTGPVLRASGIPYDVRRAEPYSVYDELDFD 245 Query: 419 VHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLP---GG---PLMV----EGFTYIPHR 468 + DV R +RI E+ + ++ ++ LP GG P M + P Sbjct: 246 IPIGSVGDVYDRFLIRIEEMRQSYRILQQVIERLPDTTGGHINPAMANIGKQKALRPPPG 305 Query: 469 FALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSL 528 A E+P+G+ + ++ +++ YR++ RA ++ N L M RG+ V+D +I+GS+ Sbjct: 306 DAYARIESPKGELGFYLVSDGSERPYRYKVRAPSFINLTPLGDMCRGHKVADVVVILGSI 365 Query: 529 DPCYSCTDR 537 D D+ Sbjct: 366 DIVMGEVDK 374 >UniRef50_B1ZUJ2 NADH-quinone oxidoreductase subunit D 2 n=5 Tax=Bacteria RepID=NUOD2_OPITP Length = 399 Score = 145 bits (366), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 106/362 (29%), Positives = 170/362 (46%), Gaps = 8/362 (2%) Query: 181 VVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFL--SD 238 + +GP H + + +DGE + +A+ + Y+HR EK+ E R FL + Sbjct: 41 TINLGPQHPAAHGVLRVLMRMDGEWVENAEPVIGYIHRMHEKMGENR---TWAKFLPNTS 97 Query: 239 RVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFD 298 R+ + ++ A+ VE + I+VPERA+ IR I E+ R+ SH + G G Sbjct: 98 RIDYLSAMHYTHAWVGVVERGLKIEVPERAEYIRVITSELNRIASHQVWWGALLLDLGGF 157 Query: 299 SGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQE 358 + + F RE + + E L GAR TY GG+ D D + TR+ + MR ++ Sbjct: 158 TPILYAFDDREKILDLLEGLCGARLTYCYYRFGGLYNDADDDFLKGTREFVKYMRPRLKM 217 Query: 359 LVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPME 418 D++ + QR GIG + + R + GP++R SG A D R P+ Y L + Sbjct: 218 YRDLVTDNVILRQRLTGIGPISADTCRKYGATGPVIRGSGVAYDVRRAEPYSVYPKLQFK 277 Query: 419 VHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLM---VEGFTYIPHRFALGFAE 475 + + CD ++R VR++E+ +LN+I+ LD + GP M V +P E Sbjct: 278 IPTYPECDSMARYLVRMDEMEESLNIIEQCLDLIQPGPFMAPKVPRVIRLPAGDYTYAVE 337 Query: 476 APRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCT 535 A RG + ++ + YR R R ++ N RG + DA ++GSLD Sbjct: 338 AARGRFMVRVVSDGKENPYRARLRTPSFGNLSLFEETSRGMLLPDALAMMGSLDLVIPDI 397 Query: 536 DR 537 DR Sbjct: 398 DR 399 >UniRef50_Q979M3 NADH dehydrogenase I chain D n=6 Tax=Thermoplasmatales RepID=Q979M3_THEVO Length = 369 Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 97/369 (26%), Positives = 176/369 (47%), Gaps = 21/369 (5%) Query: 182 VPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 241 V GP H + ++ +DGE + D + + Y+HR EK+ E + + + + DR+ Sbjct: 9 VNFGPQHPSMHGVLRLKVKLDGEIVKDVEPIIGYLHRNAEKICELQFYCDNMIYF-DRMD 67 Query: 242 GICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGF 301 + Y + E + ++ P RA+ IR ++ E+ R+ SHL+ LG G + F Sbjct: 68 YVAAMNMEIGYLEAAEKLLDVEPPGRAKWIRVMMGELNRIASHLVWLGAFGLDLGMLTPF 127 Query: 302 MQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVD 361 F+ RE +K+ ++G+R+ IGG+ +D+ + + +Q + +E+ + + Sbjct: 128 FYCFKEREKILKIFTEVSGSRQQLNYMSIGGVYQDVTDEALDHIKQFITEFPKELNMIAN 187 Query: 362 VLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHS 421 + + RT G+G L E+A D+ GPM+RASG D R P++ Y + ++ Sbjct: 188 LFVKNDIFLSRTKGVGILSKEMAIDYGVTGPMLRASGVEYDVRKAEPYLVYDKVNFDIPV 247 Query: 422 EQGCDVISRLKVRINEVYTALNMIDYGLDNLPGG---------PLMV----EGFTYIPHR 468 D ++R VRI E+ ++ +ID + LP G PLM+ +G Y Sbjct: 248 SFKGDNLARFLVRIEEMRQSVKIIDQTIQKLPAGPYFNQKAKKPLMIRLRGQGEVY---- 303 Query: 469 FALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSL 528 E+P+G+ + + + + YR R R+ T+ N L + +G ++D I GS+ Sbjct: 304 ---ARTESPKGEFGVYIVGDGSLRPYRVRVRSPTFKNLSVLPALAKGQMIADLISIGGSI 360 Query: 529 DPCYSCTDR 537 D + DR Sbjct: 361 DLVFGEVDR 369 >UniRef50_B1W516 NADH-quinone oxidoreductase subunit D 1 n=24 Tax=Actinomycetales RepID=NUOD1_STRGG Length = 440 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 106/407 (26%), Positives = 178/407 (43%), Gaps = 46/407 (11%) Query: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235 D + +V +GP H ++ L +DGE + +A + Y+H G+EK E R TF Sbjct: 35 DDERIIVNMGPQHPSTHGVLRLILEIDGETVTEARCGIGYLHTGIEKNLEFRNWTQGTTF 94 Query: 236 LSDRVCGICGFAHSTAYTTSVENAMGI--QVPERAQMIRAILLEVERLHSHLLNLGLACH 293 ++ R+ + F + TAY VE +GI Q+P+RA ++R +L+E+ RL SHL+ + Sbjct: 95 VT-RMDYLTPFFNETAYCLGVEKLLGIEDQIPDRATVLRVLLMELNRLSSHLVCIATGGM 153 Query: 294 FTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMR 353 G + + FR RE + + E+ TG R + GG+ +DL + + R+ + M+ Sbjct: 154 ELGATTIMIYGFRDRELVLDLFELFTGLRMNHAFVRPGGLAQDLPPGAVDRLREFIKTMK 213 Query: 354 REVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYG 413 + + E + P + R +G LD GP++R++G D R P+ GY Sbjct: 214 KNLPEYDKLATGNPIFKARMQDVGYLDLTGCMALGATGPVLRSAGLPHDLRKSDPYCGYE 273 Query: 414 LLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVE------------- 460 EV + CD R +R+ E+ +L +I+ +D L GP+MV Sbjct: 274 TYDFEVPTADTCDSYGRFLIRLEEMRQSLRIIEQCIDRLEPGPVMVADKKIAWPAQLALG 333 Query: 461 -----------------GFTYIPHRFAL---GF----------AEAPRGDDIHWSMTGDN 490 + H F L GF E+P+G+ ++ Sbjct: 334 PDGLGNSLDHIRNIMGTSMEALIHHFKLVTEGFRVPPGQVYTAVESPKGELGVHVVSDGG 393 Query: 491 QKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + YR R ++ N + M G V+D + + S+DP DR Sbjct: 394 TRPYRVHFRDPSFTNLQAMAAMCEGGQVADVIVAVASIDPVMGGVDR 440 >UniRef50_B1VSH7 NADH-quinone oxidoreductase subunit D 2 n=6 Tax=Actinomycetales RepID=NUOD2_STRGG Length = 394 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 103/370 (27%), Positives = 177/370 (47%), Gaps = 8/370 (2%) Query: 166 ETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAE 225 ET I + + V+ IGP H ++ R+ +DGE + A+ + Y+HRG EKL E Sbjct: 17 ETTIGIGGAAESTDMVLNIGPQHPSTHGVLRLRIVLDGERVQHAEPVIGYMHRGAEKLFE 76 Query: 226 TRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHL 285 R Y ++ L++R + F++ +VE +G++VPERA R +L E+ R+ +HL Sbjct: 77 AR-DYRQIIMLANRHDWLSAFSNELGVVMAVERMLGMEVPERAVWTRTLLAELNRVLNHL 135 Query: 286 LNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQT 345 + LG G + FR RE + E ++G R Y N +GG++ D+ + Sbjct: 136 MFLGSYPLELGGITPVFHAFREREELQAVMEEVSGGRMHYMFNRVGGLKEDVPAGWAGRV 195 Query: 346 RQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRA 405 R +R + +++L RT +G L + GP+ RASG D R Sbjct: 196 RDAVASVRSRMDVYENLVLGNEIFRGRTRDVGVLSAAAVHAYGVSGPIARASGVDFDLRR 255 Query: 406 DHPFVGYGLL--PMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLD---NLPGGPL--M 458 D P++ YG L ++V + D ++R + + + +L++ D LD +L GP+ Sbjct: 256 DEPYLAYGELRDTLKVVTRTEGDCLARFECLLEQTLNSLDLADACLDRMAHLAPGPINQR 315 Query: 459 VEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTV 518 + P + E P G + ++ ++ + YR + R+A++ N L +L G V Sbjct: 316 LPKVLKAPEGHTYAWTENPLGVNGYYLVSKGEKTPYRLKLRSASFNNIQALTELLPGTLV 375 Query: 519 SDAPLIIGSL 528 +D I+GSL Sbjct: 376 ADMVAILGSL 385 >UniRef50_B8IYV5 NAD-dependent dehydrogenase subunit n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8IYV5_DESDA Length = 565 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 132/481 (27%), Positives = 193/481 (40%), Gaps = 49/481 (10%) Query: 101 YPSVTPRVPAAVWGEREVRDMYGLIPVGLP---DERRLVLPDDWPDELYPLR-------- 149 + S+TP +P + ERE+ + +G+ PVG P RR+ PD Sbjct: 88 FVSMTPELPQLHYFEREIYEQWGVEPVGHPWLKSVRRI--PDSAEAAARNAAESQTSSAA 145 Query: 150 --KDSMDYRQRPAPTTDAET----YEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDG 203 ++S + PA T A Y F G + V +GP+H EPGHFR G Sbjct: 146 PAQESAEVVPSPALTASARPQTLPYPFYRVEGADVHEVA-VGPVHAGIIEPGHFRFQCYG 204 Query: 204 ENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQ 263 EN++ + L Y HRG+E + T+ L + G AH+TA+ +E G Q Sbjct: 205 ENVLHLEIALGYQHRGLEAMI-TQGPAGRRLHLLECAAGDSTVAHATAHCVLLERMTGQQ 263 Query: 264 VPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARK 323 ERAQ++R I LE+ERL +H +LG TGF R+R + + L G R Sbjct: 264 PDERAQLLRRIGLELERLANHTGDLGAIAGDTGFLPTASWNGRIRGDFLNITASLCGNRF 323 Query: 324 TYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEI 383 GL GG+ DL + + + + VDV+L + R G ++P Sbjct: 324 GRGLLRPGGVAYDLAPSECADMLARVRAAWHDARGSVDVMLDAVTVRNRLADTGMVEPAT 383 Query: 384 ARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALN 443 AR+ VG RA G D R P E DV++R VR E+ +L Sbjct: 384 ARELGLVGVAARACGLDVDARFHMPLSDLPCEGCAPRLEITGDVMARTLVRSRELDDSLR 443 Query: 444 MIDYGLDNLPGGPLMVEGFT----------------------------YIPHRFALGFAE 475 ++++ L L P T P A+ E Sbjct: 444 LLEFDLARLGALPHTKNAATAESTVSAPATAAATNTSGTAAEAASFDALPPDTLAVALVE 503 Query: 476 APRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCT 535 RG+ H +T +L ++ ++ NW L LRGN +SD PL S + Y Sbjct: 504 GWRGEVCHVGLTDSRGRLLVYKVVDPSFHNWAGLAMALRGNQISDFPLCNKSFNLSYCGH 563 Query: 536 D 536 D Sbjct: 564 D 564 >UniRef50_P56753 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic n=201 Tax=cellular organisms RepID=NDHH_ARATH Length = 393 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 114/386 (29%), Positives = 175/386 (45%), Gaps = 33/386 (8%) Query: 181 VVPIGPLHVTSDEPGHFRLFV--DGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSD 238 +V +GP H + G RL V DGE+++D + L Y+HRGMEK+AE R + +++ Sbjct: 12 IVNMGPHHPSMH--GVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRAIIQYLPYVT- 68 Query: 239 RVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFD 298 R + E IQVP+RA IR I+LE+ R+ SHLL LG G Sbjct: 69 RWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQ 128 Query: 299 SGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQE 358 + F FR RE + E TG R + IGGI DL + + EV E Sbjct: 129 TPFFYIFREREFVYDLFEAATGMRMMHNFFRIGGIAADLPYGWIDKCLDFCDYFLTEVVE 188 Query: 359 LVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPME 418 ++ P +R G+G + E A ++ GPM+RASG D R + Y E Sbjct: 189 YQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIPWDLRKIDRYESYDEFEWE 248 Query: 419 VHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGP---LMVEGFT------------ 463 + ++ D ++R VR++E+ ++ +I L+ LPGGP L GF Sbjct: 249 IQWQKQGDSLARYLVRLSEMTESIKIIQQALEGLPGGPYENLESRGFDRKRNPEWNDFEY 308 Query: 464 -YIPHRFALGF----------AEAPRGDDIHWSMTGDNQKL-YRWRCRAATYANWPTLRY 511 +I + + F EAP+G ++ + GD +RW+ R + N L Sbjct: 309 RFISKKPSPTFELSKQELYVRVEAPKG-ELGIFLIGDQSGFPWRWKIRPPGFINLQILPE 367 Query: 512 MLRGNTVSDAPLIIGSLDPCYSCTDR 537 +++ ++D I+GS+D DR Sbjct: 368 LVKRMKLADIMTILGSIDIIMGEVDR 393 >UniRef50_Q2JFL7 NADH-quinone oxidoreductase subunit D n=81 Tax=Bacteria RepID=NUOD_FRASC Length = 482 Score = 142 bits (357), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 115/423 (27%), Positives = 185/423 (43%), Gaps = 48/423 (11%) Query: 162 TTDAETYEFINELGDKKNN--VVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRG 219 T +E I +G+++N VV +GP H ++ L ++GE + + + Y+H G Sbjct: 61 TVTGSDWEQILGVGEEENERIVVNMGPQHPSTHGVLRLVLEIEGETVTETRLVIGYLHTG 120 Query: 220 MEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGI--QVPERAQMIRAILLE 277 +EK E R VTFL+ R + + AY SVE +GI QVPERA +IR +++E Sbjct: 121 IEKSCEYRTWTQAVTFLT-RADYLSPLFNEAAYCLSVERLLGITEQVPERATVIRVMVME 179 Query: 278 VERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDL 337 ++R+ SHL+ L G + + FR RE + + E++TG R + GG+ +DL Sbjct: 180 LQRIASHLVWLATGGMELGATTAMIFGFREREKVLDLLELITGLRMNHAYIRPGGLAQDL 239 Query: 338 LKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRAS 397 R M + ++E +L P + R V + LD GP++RA+ Sbjct: 240 PDGAERAIRAFLADMPKRIREYHALLTGQPVWKARMVDVNVLDAAGCIALGTTGPVLRAA 299 Query: 398 GHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPL 457 G D R P+ GY +V + D +R VR+ E+ +L ++D LD L GP+ Sbjct: 300 GLPWDLRKTMPYCGYETYEFDVPTALEGDSFARYLVRLEEMGESLKIVDQCLDRLRPGPV 359 Query: 458 MV-------------------EGFTYIP-----------HRFAL---GF----------A 474 MV YI H F L GF Sbjct: 360 MVADKKIAWPSQLSVGSDGTGNSLAYIRKIMGTSMEALIHHFKLVTEGFRVPAGQVYTQI 419 Query: 475 EAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSC 534 E+PRG+ + ++ + +R R ++ N + + G V+D + + S+DP Sbjct: 420 ESPRGELGYHVVSDGGTRPFRVHVRDPSFVNLQAVPALTEGGQVADVIVGVASVDPVLGG 479 Query: 535 TDR 537 DR Sbjct: 480 VDR 482 >UniRef50_A5FW46 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FW46_ACICJ Length = 476 Score = 140 bits (354), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 127/427 (29%), Positives = 192/427 (44%), Gaps = 40/427 (9%) Query: 102 PSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDS-MDYRQRPA 160 PS+ P W ERE D G+ G P+ L+ P LR D D R+ P Sbjct: 65 PSIATIWPLLGWYERETADHRGIAFSGQPEPFSLIAP---------LRADEEADLRRLPG 115 Query: 161 PTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGM 220 + DA V+P GP+ E F F GE I+ LF HRGM Sbjct: 116 LSGDA-------------VQVLPFGPVRAGVVESAEFSFFYVGEAILHYVPHLFLKHRGM 162 Query: 221 E-----KLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAIL 275 E + ET + L++RV G+ AH+ AY ++E A + VP RA+ R I+ Sbjct: 163 EDRFVDQTPETGL------VLAERVSGVGSVAHALAYAQAMEAAAQVAVPGRARYQRVIV 216 Query: 276 LEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRR 335 E+ERL++HL LG T + + E ++ +TG+R G+ GG+RR Sbjct: 217 AELERLYNHLHYLGHLADTTTLKVAHAEGALLAERVKQIGARVTGSRFLRGVIAPGGLRR 276 Query: 336 DLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVR 395 +L + + +R ++ + L ++ + R G L E+A D GP+ R Sbjct: 277 ELRVEGLAGA---LDALRAPIRRYIARLDASESHFDRLATTGVLPREVAFDQGATGPVAR 333 Query: 396 ASGHARDTRADHPFVGYG--LLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLP 453 ASG RD R DH + Y L + V + D +R +VRI E+ AL MI + P Sbjct: 334 ASGLDRDLRRDHAYAAYDDPDLALAVATGTDGDAHARARVRIAEIENALLMIVRAIALTP 393 Query: 454 GGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYML 513 GG + V A+G+AE+PRG I+ G + +L R + ++ +++NW Y + Sbjct: 394 GGAIRVA-CAPAAGAEAMGWAESPRGTLIYAVHVGPDGRLARVKIKSPSFSNWRVFPYTV 452 Query: 514 RGNTVSD 520 G + D Sbjct: 453 HGTNMMD 459 >UniRef50_B3TC54 Putative Respiratory-chain NADH dehydrogenase, 49 Kd subunit n=1 Tax=uncultured marine microorganism HF4000_APKG10H11 RepID=B3TC54_9ZZZZ Length = 363 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 99/349 (28%), Positives = 169/349 (48%), Gaps = 8/349 (2%) Query: 185 GPLHVTSDEPGHFRLF--VDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCG 242 GP H + GHFR+ +DG+ + A+ + Y HRG+EKL E R + + +R Sbjct: 11 GPQHPVT---GHFRMIMTIDGDLCVGAEPTIGYTHRGIEKLLENRQFLVGIPMI-ERFNM 66 Query: 243 ICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFM 302 S +YT +VE+ M + P RAQ +R I+ E+ RL SHL NL L G + FM Sbjct: 67 TDTAPMSLSYTKAVESLMDFEAPPRAQYLRTIISEICRLSSHLYNLALYTVALGMYTPFM 126 Query: 303 QFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMR-REVQELVD 361 RE +K+ EIL+G R Y + GG+ +D+ D Q + + R R +++ Sbjct: 127 WAIGDREHFLKLGEILSGVRLAYNYPIPGGVYKDMPPDFPHQATKTIKYFRNRLLKDYKK 186 Query: 362 VLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHS 421 + T ++ R +G + E A + GP++RASG +D R P+ Y + +V + Sbjct: 187 FIYDTTAVKSRGEDVGIMSKEEALKWGVTGPVLRASGVKKDMRKVEPYGAYNEVDFDVIT 246 Query: 422 EQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDD 481 + D +R+ VR E+ +LN+++ + ++P G + +P EA RG+ Sbjct: 247 KNEGDSHARMLVRYEEMEQSLNILEQCIKDIPAGDYFTKVRPAVPAGETFTRVEAARGEV 306 Query: 482 IHWSMTGDNQKL-YRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLD 529 + + + + YR + ++ N L + G+ ++D I S+D Sbjct: 307 GVYLFNKETRNMPYRTKFSNPSFKNGYVLPKLFVGSVIADCAAIYHSID 355 >UniRef50_Q2RJU4 NADH-quinone oxidoreductase subunit D n=94 Tax=Firmicutes RepID=NUOD_MOOTA Length = 371 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 98/366 (26%), Positives = 172/366 (46%), Gaps = 23/366 (6%) Query: 184 IGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGI 243 +GP H ++ L +DGE ++ + + Y+HRG+EKLAE R Y +V +DR+ + Sbjct: 17 MGPQHPSTHGVYRALLTLDGEKVVGVENIIGYLHRGIEKLAEDRT-YTQVIPYTDRLDYL 75 Query: 244 CGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLG-LACHFTGFDSGFM 302 G ++ Y +VE +G++VPERA+ +R I+ E+ RL SH++ + +A +G+ + F Sbjct: 76 AGMLNNLGYVQTVEKLLGLEVPERAEYLRVIMAELSRLASHMVMVASMALDLSGWTAWFP 135 Query: 303 QFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDV 362 F R RE + + E+ G+R T IGG+ D+ + + R + E+ + Sbjct: 136 PF-RERERILDLFEMTCGSRLTVSYMRIGGVAADIPPGFLPALESFLNDLPRMIAEMNGL 194 Query: 363 LLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSE 422 + + R G+G++D E A + GP +RA G D R P+ Y ++ + Sbjct: 195 ITGNEIFKARCQGVGKIDLETALAYGITGPNLRACGLPFDLRKARPYSIYDRFDFDIPTL 254 Query: 423 QGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDI 482 D R +R+ E+ + +I ++ LP GP+ + +P L PRG+ Sbjct: 255 NNGDSYDRFVIRLLEMEQSARIIRQAMEQLPDGPVQAK----VPRVLKL-----PRGEVY 305 Query: 483 H-----------WSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPC 531 H + ++ K YR + ++ N L + G T+ D + I S+D Sbjct: 306 HQIEGAKGILGFYLVSDGGSKPYRLHIHSPSFVNLGALPRISVGGTIQDFVVNIASIDIV 365 Query: 532 YSCTDR 537 DR Sbjct: 366 LGEVDR 371 >UniRef50_A5FKI7 NADH-quinone oxidoreductase subunit D n=17 Tax=Bacteria RepID=NUOD_FLAJ1 Length = 412 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 102/378 (26%), Positives = 177/378 (46%), Gaps = 29/378 (7%) Query: 180 NVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDR 239 +V+ +GP H + L +DGE I++A+ + Y+HR EK+AE R Y ++T L+DR Sbjct: 28 SVLNLGPTHPATHGIFQNILLMDGERILEAEPTIGYIHRAFEKIAENRPFY-QITPLTDR 86 Query: 240 VCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDS 299 + ++ + ++E +GI+VP+RAQ +R I++E+ R+ H++ + TG + Sbjct: 87 MNYCSSPINNMGWWMTLEKLLGIEVPKRAQYLRVIVMELARITDHIICNSILGVDTGAYT 146 Query: 300 GFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQEL 359 GF+ F+ RE ++ E + GAR T + IGG RD + + + ++ +E Sbjct: 147 GFLYVFQFREKIYEIYEEICGARLTTNMGRIGGFERDWSPEAFRKLDKFLEEFPPAWKEF 206 Query: 360 VDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEV 419 ++ RTV +G + E A + GP +RA+G D R HP+ Y V Sbjct: 207 ENLFERNRIFLDRTVNVGGITAEKAMAYGFTGPNLRAAGVDYDVRVAHPYSSYEDFDFIV 266 Query: 420 HSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFT--YIP----------- 466 + D R VR EV+ +L++I L+ +P G Y+P Sbjct: 267 PVGKSGDTYDRFCVRNAEVWESLSIIRQALEKMPAGNEYHAEVPDYYLPPKEDVYNSMES 326 Query: 467 --HRFALGFAEAPRG-DDIHWSMTGDNQKL------------YRWRCRAATYANWPTLRY 511 + F + E P +I+ ++ G N +L YR R + + Sbjct: 327 LIYHFKIVMGEVPVPVSEIYHAVEGGNGELGFYLATDGSRTPYRLHFRRPCFIYYQAFPE 386 Query: 512 MLRGNTVSDAPLIIGSLD 529 M++G +SDA +I+ SL+ Sbjct: 387 MIKGALLSDAIIILSSLN 404 >UniRef50_C2BU22 NADH dehydrogenase (Quinone) n=4 Tax=cellular organisms RepID=C2BU22_9ACTO Length = 457 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 112/408 (27%), Positives = 173/408 (42%), Gaps = 55/408 (13%) Query: 181 VVPIGPLHVTSDEPGHFRLFVD--GENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSD 238 V +GP+H ++ G R+ V+ GE + D Y+H G+EK E R YN+ Sbjct: 54 AVNLGPVHPSTH--GVLRVIVELEGETVKDCRLGTGYLHTGIEKSMEYRT-YNQGVAYCS 110 Query: 239 RVCGICGFAHSTAYTTSVENAMGI--QVPERAQMIRAILLEVERLHSHLLNLGLACHFTG 296 R+ + F A+ +VE A+G+ QVP RA IR +L+E+ R+ SHL+ +G + G Sbjct: 111 RMDYVAPFFSEVAWCLAVEKALGVTDQVPRRASEIRVLLMELNRIASHLVAVGTGANELG 170 Query: 297 FDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREV 356 + FR RE +++ E +TG R GG+ DLL D + R+ ++R++ Sbjct: 171 ATTMLTTGFRGREEILRIFEHITGLRMNNTYMRPGGVSNDLLDDTIDMIREKLPLVKRDI 230 Query: 357 QELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLP 416 E+ D++++ P R +G L S GP +RA G D R P+ GY Sbjct: 231 GEMQDLIMANPIFIGRMKNVGWLPLSTMMALSLTGPCLRAGGLPLDMRKLQPYCGYEAYT 290 Query: 417 MEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNL---PGGPLMV-------------- 459 +V + D +R +VR E+Y +L ++ LD L G P+M+ Sbjct: 291 FDVPTRDHSDCYTRTEVRFEEMYQSLRIVYQVLDRLEQSEGEPVMIADPKFAYPSKLTIG 350 Query: 460 ------------------------------EGFTYIPHRFALGFAEAPRGDDIHWSMTGD 489 EGF P + A +H G Sbjct: 351 ADGQGQDPEHVSHILGHSMEELIHHFKLVTEGFRIPPGQVYAQVEHAKGIQGVHLVTDGG 410 Query: 490 NQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 YR R +YAN + M G +SD + IGS+DP + DR Sbjct: 411 THP-YRAHFRDPSYANLQSASMMCEGGLISDLVVSIGSIDPVFGGVDR 457 >UniRef50_UPI00019012E4 NADH dehydrogenase subunit D n=1 Tax=Mycobacterium tuberculosis T92 RepID=UPI00019012E4 Length = 424 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 83/282 (29%), Positives = 146/282 (51%), Gaps = 3/282 (1%) Query: 181 VVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 240 VV +GP H ++ L ++GE +++A + Y+H G+EK E R VTF++ R+ Sbjct: 40 VVNMGPQHPSTHGVLRLILEIEGETVVEARCGIGYLHTGIEKNLEYRYWTQGVTFVT-RM 98 Query: 241 CGICGFAHSTAYTTSVENAMGI--QVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFD 298 + F + TAY VE +GI ++PER +IR +++E+ R+ SHL+ L G Sbjct: 99 DYLSPFFNETAYCLGVEKLLGITDEIPERVNVIRVLMMELNRISSHLVALATGGMELGAM 158 Query: 299 SGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQE 358 + FR RE + + E +TG R GG+ +DL + + + +Q+R+ ++E Sbjct: 159 TPMFVGFRAREIVLTLFEKITGLRMNSAYIRPGGVAQDLPPNAATEIAEALKQLRQPLRE 218 Query: 359 LVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPME 418 + ++L + RT G+G LD GP++R++G D R P+ GY + Sbjct: 219 MGELLNENAIWKARTQGVGYLDLTGCMALGITGPILRSTGLPHDLRKSEPYCGYQHYEFD 278 Query: 419 VHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVE 460 V ++ CD R +R+ E++ ++ +++ LD L GP M+ Sbjct: 279 VITDDSCDAYGRYMIRVKEMWESMKIVEQCLDKLRPGPTMIS 320 >UniRef50_A9B4Z7 NADH-quinone oxidoreductase subunit D 1 n=9 Tax=Bacteria RepID=NUOD1_HERA2 Length = 422 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 108/393 (27%), Positives = 181/393 (46%), Gaps = 35/393 (8%) Query: 177 KKNNVVPIGPLHVTSDEPGHFRLFVD--GENIIDADYRLFYVHRGMEKLAETRMGYNEVT 234 +++ V+ +GP H ++ G RL V+ GEN++ + ++H G+EK ET+ Y + Sbjct: 33 EQSMVLSMGPQHPSTH--GVLRLAVELNGENVVQLAPDVGFLHTGIEKTIETKT-YTKSI 89 Query: 235 FLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHF 294 L+DR+ + +++ Y ++E M VPERAQ +R +LLE+ R++SHL+ LG Sbjct: 90 VLTDRMDYLAPMSNNMVYVAAIEKLMQQDVPERAQTLRVLLLELTRINSHLVWLGTHALD 149 Query: 295 TGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRR 354 S F R RE + + E+LTGAR +GG+ D+ D + Sbjct: 150 LAAMSVFFYAMREREYILDIFEMLTGARMMTSYFRVGGLAWDIPADFIPTVEDFLTHFLP 209 Query: 355 EVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGL 414 +V E D+L + +QRT G+G ++ A G +RASG D R P+ GY Sbjct: 210 KVDEYEDLLTNNLLWKQRTKGVGVVNAADAIALGLSGANLRASGVDWDLRKTMPYSGYET 269 Query: 415 LPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLD---NLPGGPLMVEGFTYIP----- 466 +V Q D+ R + R+ E+ ++ + ++ + G P + E P Sbjct: 270 YQFDVPVGQAGDIYDRYRCRVQEMRESVKIARQAIERVKQMHGQPYVTENRKVAPPPKSE 329 Query: 467 ---------HRFAL---GF----------AEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 504 H F L GF E+PRG+ + ++ K +R RA ++ Sbjct: 330 ITYSMESLIHHFKLWTEGFRPPRGSAYAAIESPRGEIGCYVVSDGTPKPWRVHFRAPSFI 389 Query: 505 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 N L ++ +G ++D +I S+DP DR Sbjct: 390 NLQALPHIAKGKLMADLVALIASIDPVLGEVDR 422 >UniRef50_A5UWP3 NADH-ubiquinone oxidoreductase, chain 49kDa n=2 Tax=Roseiflexus RepID=A5UWP3_ROSS1 Length = 358 Score = 138 bits (347), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 97/355 (27%), Positives = 161/355 (45%), Gaps = 4/355 (1%) Query: 184 IGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGM-EKLAETRMGYNEVTFLSDRVCG 242 +GP H P F L + + ++D +Y+ + RG E+L R+ + L R+CG Sbjct: 7 LGPFHPAWLGPQRFILHIADDRVVDVEYQNGFNERGCAERL--PRLPLPDALHLVARICG 64 Query: 243 ICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFM 302 C FAHS A+ ++E +V RA ++R + E+ER +HL G + Sbjct: 65 ECSFAHSLAFCQAIEQVQRRKVGARAALLRVAIAELERTAAHLYTARAVLDAIGMEQRGA 124 Query: 303 QFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDV 362 + S M ++TG R + GG+ RDL + + + M ++ +D Sbjct: 125 ILDHFCQQSRDMLALVTGGRIPPPVCAPGGLLRDLTPVERQEVLAMLPGMSADLYRFIDR 184 Query: 363 LLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSE 422 L+ + RTV +G L A F GP+ RASG RD R D P+ Y +L ++ + Sbjct: 185 LIDQRFLLMRTVEVGVLPRAAAEQFGVRGPLARASGIRRDVRVDQPYAAYSMLDVQPIIQ 244 Query: 423 QGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDI 482 +G DV +RL + + E Y + +++ L LP +VE +P A E PRG I Sbjct: 245 EGGDVYARLLLLLLEAYEGVKLVESALQRLPEEDPIVELPHELPRGQASSVVEGPRG-AI 303 Query: 483 HWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 +++ D +L R + + R +L + D I+ SL C +C ++ Sbjct: 304 RYTLESDGVRLTRVQIDTPRQCDRLLARTLLSRAQLDDVMAILASLAVCVACAEQ 358 >UniRef50_B1ZRT0 NADH-quinone oxidoreductase subunit D 1 n=16 Tax=Bacteria RepID=NUOD1_OPITP Length = 426 Score = 138 bits (347), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 111/392 (28%), Positives = 173/392 (44%), Gaps = 33/392 (8%) Query: 175 GDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVT 234 GD+ + + +GP H ++ ++ ++GE + AD + Y+HRG EK+AE M YN+ Sbjct: 39 GDRMS--LSMGPSHPSTHGVLRIQMELEGEILTKADPIIGYLHRGDEKIAEN-MTYNQFV 95 Query: 235 FLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHF 294 +DR+ + A++ AY +VE G+ VP R Q IR I E+ R+ SHL+ LG Sbjct: 96 PYTDRLDYLAPLANNMAYVIAVEKLAGLTVPPRCQAIRVITAELARISSHLMGLGAFGLD 155 Query: 295 TGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRR 354 G + + RE + E LTGAR T IGG+ RD+ + + Sbjct: 156 VGAWTVLVLSLNQREFLYNLFEDLTGARFTTSYTRIGGVTRDVPPGWLENVGTFCDKFLP 215 Query: 355 EVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGL 414 ++E++ +L RTVG+G + E A + GP R SG A D R D P+ GY Sbjct: 216 ALEEILSLLTRNKIFLDRTVGVGVISKEDAIAYGITGPNARGSGIATDLRKDRPYSGYEQ 275 Query: 415 LPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGP------------------ 456 +V D R VR E+ ++ +I + N PGG Sbjct: 276 YEFDVPVGTKGDCYDRYLVRGEEMRQSVRIIRQVIKNFPGGDWYATEAKKVFLPPKGKVL 335 Query: 457 -----------LMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYAN 505 L+ EG +P AE P+G + ++ YR + R+ ++ N Sbjct: 336 SSMEELIQQFMLVTEG-PQMPAGEVYFEAENPKGILGFYIVSKGGGVPYRLKIRSPSFCN 394 Query: 506 WPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + + +G +SD I+GSLD DR Sbjct: 395 LSLVPKLCQGVLISDVVAILGSLDFVMGECDR 426 >UniRef50_Q21TB4 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21TB4_RHOFD Length = 498 Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 131/494 (26%), Positives = 214/494 (43%), Gaps = 37/494 (7%) Query: 52 KQGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAA 111 + G L LFG +L + V + ++ + +R + Y +T + PAA Sbjct: 32 QAGERLLTLFGRPAPELGVNIIVVTAV-LQPAQGALVILRATAQRGE-HYRCLTAQHPAA 89 Query: 112 VWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFI 171 ERE+ + GL PDD P L P+R + + +QR Y F Sbjct: 90 QIFERELWEQTGL------------FPDDHP-WLKPVRFEG-ERQQR------MLEYPFF 129 Query: 172 NELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYN 231 G + + V +GP+H + EPGHFR GEN+ + +L Y HRG+E L R + Sbjct: 130 KVRGQEVHEV-GVGPIHASVIEPGHFRFMCLGENVHHLEIQLGYQHRGVEGLLLRRPVW- 187 Query: 232 EVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLA 291 ++T L + +CG A++ Y ++E V Q RAI LE+ER+ HL LG Sbjct: 188 QLTPLVESICGDSAVAYAWGYGAALELMSNQPVAPAIQASRAIALEMERIAMHLATLGGM 247 Query: 292 CHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIR--RDLLKDDMIQT-RQL 348 F G + R+R + ++ + G R G G + + L+ D+ +T R Sbjct: 248 ATDIAFLQGGATYGRLRTAIINASQRVCGNRFGRGWIRPGQAKPLSEALQQDLTRTLRAF 307 Query: 349 AQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHP 408 A + ++ ++L+ +++ R G G + + A D GP+ RASG A D R P Sbjct: 308 AP----DFTQINQLMLAARSVQARLHGTGTVSQQAALDLGLTGPVARASGVALDHRTQWP 363 Query: 409 FVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMI-----DYGLDNLPGGPLMVEGFT 463 YG P+ + +E D +R+++R+ EV +L + D L+ G Sbjct: 364 GAAYGHAPLPMVTEPDGDCWARMRLRMREVDASLAWLLQLLGDTTLNLSQAGQAQSSTPA 423 Query: 464 YI-PHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAP 522 + + E RG + T +L ++ + + ANW L + +R N +SD P Sbjct: 424 ALQAEALCVSLVEGTRGPVLQVLETSAKGELRHYKVQDPSTANWFGLAFAMRDNAISDFP 483 Query: 523 LIIGSLDPCYSCTD 536 + S D Y D Sbjct: 484 ICNKSFDLSYCGND 497 >UniRef50_B4SJH6 NADH-quinone oxidoreductase subunit D 1 n=211 Tax=Proteobacteria RepID=NUOD1_STRM5 Length = 436 Score = 137 bits (346), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 116/434 (26%), Positives = 190/434 (43%), Gaps = 63/434 (14%) Query: 159 PAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHR 218 PAP D I +N V+ +GP H + L +DGE ++ AD + +HR Sbjct: 11 PAPMRDGRRDTEI------RNYVMNLGPQHPAAHGVLRLVLEMDGETVVRADPHVGLLHR 64 Query: 219 GMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEV 278 G EKLAE++ +N+ DR+ + + AY ++E +GI+ P RAQ IR + E+ Sbjct: 65 GTEKLAESK-PFNQSIGYMDRLDYVSMMCNEHAYVRAIETLLGIEAPIRAQYIRTMFDEI 123 Query: 279 ERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLL 338 R+ +HL+N+G G + + FR RE M E ++GAR GG+ R+ L Sbjct: 124 TRILNHLMNIGTGALDLGAMAVMLYAFREREELMDCYEAVSGARMHATYYRPGGVYRE-L 182 Query: 339 KDDMIQTRQ----LAQQMRR----------------------EVQELVDVLLSTPNMEQR 372 + M + ++ +Q+RR + E +L +QR Sbjct: 183 PEQMPKYKESRWKTGKQLRRLNAAREGSLLDFIENFTREFPNRIDEYETLLTDNRIWKQR 242 Query: 373 TVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLK 432 TVGIG + P+ A ++ G M+R SG A D R P+ Y + ++ D R Sbjct: 243 TVGIGVVSPQQAMEWGMTGVMLRGSGVAWDLRKKRPYAKYDAVDFDIPVGTAGDCYDRYL 302 Query: 433 VRINEVYTALNMIDYGLDNLPG--GPLMVEGFTYIP--------------HRFAL----- 471 R+ E+ + +I +D L GP+M+ F P H F L Sbjct: 303 CRVAEMRQSNRIIRQCVDWLRANPGPVMLHNFKVAPPSRQEMKSDMEALIHHFKLFSEGY 362 Query: 472 --------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPL 523 EAP+G+ + ++ K +R RA +A+ +L ++RG+ ++D Sbjct: 363 QVPAGETYAAVEAPKGEFGCYLISDGANKPFRVHLRAPGFAHLSSLDEIVRGHMLADVVA 422 Query: 524 IIGSLDPCYSCTDR 537 +IG+ D + DR Sbjct: 423 MIGTYDIVFGEVDR 436 >UniRef50_A3DM94 Membrane bound protein complex subunit mbxL n=2 Tax=Desulfurococcaceae RepID=A3DM94_STAMF Length = 375 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 104/376 (27%), Positives = 170/376 (45%), Gaps = 13/376 (3%) Query: 174 LGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEV 233 + K V +GP H + F+L +DGE ++D D ++HRG EK+ E R ++ Sbjct: 1 MSKAKVLTVFLGPQHPGAPGNVGFKLLLDGERVLDIDLIPGFLHRGFEKMMEYRR-WDMD 59 Query: 234 TFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACH 293 +S R+C YT ++E GI+ PE+A+ +R I+ E RL SHLL + Sbjct: 60 LVMSARICVEDPDHIELTYTHAMEQIFGIEPPEKAKYVRVIVAEFSRLASHLLWMMYFAG 119 Query: 294 FTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMR 353 RE +K + ++G R + GG+R D+ D +T ++ + ++ Sbjct: 120 PIAARYATSWAIAAREEILKWFDYVSGHRIYHHYIFPGGVRWDIPSDFKEKTLKVLKVIK 179 Query: 354 REVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYG 413 + ++ D P E+R +GRL P A GP +R SG D R + YG Sbjct: 180 PLIDDIRDGFFYHPIFEKRARDMGRLKPGDAIRLGATGPTLRGSGVKFDLRKVLKYDAYG 239 Query: 414 LLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPG-GPLMVEGFTYIPHRFALG 472 + E+ S + D R VR+ E+Y ++ +I ++ +P GP IP +G Sbjct: 240 EIDFEIPSGEYGDSYDRALVRLREMYISMEIIRQAVEKMPTEGPYRYRLPATIPAGEGIG 299 Query: 473 FAEAPRGDDIHWSMT--------GDNQKLYRWRCRAATYANWPTLRYMLRGN---TVSDA 521 E+ RG+ + + YR + R T A+ T+ + N T++D Sbjct: 300 RVESARGEFLAHILQRPPGARRYSKPLSPYRIKFRGPTMAHLTTVLKHIVHNEEITIADL 359 Query: 522 PLIIGSLDPCYSCTDR 537 P++IGS DPC DR Sbjct: 360 PVLIGSFDPCPPDIDR 375 >UniRef50_B5YL34 NADH-quinone oxidoreductase subunit D 2 n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=NUOD2_THEYD Length = 401 Score = 135 bits (340), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 106/388 (27%), Positives = 176/388 (45%), Gaps = 32/388 (8%) Query: 181 VVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 240 V+ +GP H + +GE +I+ + Y+HRG+EKL+E++ Y L+DR+ Sbjct: 15 VLQMGPHHPATHGVLKLLCEFEGERVINIKPDVGYLHRGVEKLSESKT-YPGAMTLTDRL 73 Query: 241 CGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG 300 I ++ Y +VE MGI+ P RA+ IR ++ E+ RL SHLL L G + Sbjct: 74 DYISSMTNNIGYCLAVERLMGIEPPPRAKFIRTMVSEMTRLSSHLLWLATHALDIGAMTV 133 Query: 301 FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELV 360 F+ FR RE ++ E + GAR T IGG+R D+ + + + + M V E Sbjct: 134 FLYAFREREQILQFFEKICGARLTVSYPRIGGVRVDIKEHVLDEIYKFMDLMLIRVDEYE 193 Query: 361 DVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVH 420 +L RT G+G + PE A GP +R SG D R P+ Y + EV Sbjct: 194 TLLTENRIWIARTRGVGVIAPEDAVLLGLTGPALRGSGVYYDIRKQIPYDAYSEIDFEVP 253 Query: 421 SEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYI--PHRFA-------- 470 + D R RI E+ ++ ++ ++ +P G ++ + I PH+ Sbjct: 254 LGEKGDTYDRYLCRIREMRQSVLIVKQCIEKMPEGKILSDKSPDIDLPHQAKRKIEPGDS 313 Query: 471 -----LGFA----------------EAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTL 509 + F+ EAP+G+ + ++ + + YR R RA ++ + + Sbjct: 314 LWNGFIAFSEEKQEIMPKGEIYSAIEAPKGELGFYIVSDGSGRPYRMRVRAPSFIHISAI 373 Query: 510 RYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + G+ ++D IIG+LD DR Sbjct: 374 PKLCEGHLLADVIAIIGTLDIVMGEADR 401 >UniRef50_Q67P19 NADH-quinone oxidoreductase subunit D 1 n=1 Tax=Symbiobacterium thermophilum RepID=NUOD1_SYMTH Length = 404 Score = 135 bits (339), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 100/385 (25%), Positives = 175/385 (45%), Gaps = 32/385 (8%) Query: 184 IGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGI 243 IGP H + +L ++GE ++ A+ ++H G+EK AE + +N+ T + DR+ + Sbjct: 21 IGPHHPATHGVLRVKLELEGETVVKAEPETGFLHTGIEKTAE-HLTWNQATTVMDRMDYL 79 Query: 244 CGFAHSTAYTTSVENAMGIQ--VPERAQMIRAILLEVERLHSHLLNLGLA-CHFTGFDSG 300 +++T Y +VE +GI+ +PE+A++ R ILLE+ R+ SHL+ LG + + Sbjct: 80 SPISNNTGYVMAVEKLLGIEDRIPEKARVTRVILLELNRVASHLVGLGTGGLDYGNIGTP 139 Query: 301 FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELV 360 F +R+ + + E TG R +GG+ DL + + +QEL Sbjct: 140 IFWAFELRDRILDIFEHTTGQRMNPSYMRVGGLAYDLPHNFKEMVEDFLKVAPGRIQELK 199 Query: 361 DVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVH 420 DV+L P R G+ + E A + G +R +G D R +P++GY +V Sbjct: 200 DVMLHNPIFVDRAKGVSVITYEQALRYGLTGRNLRVTGSDYDVRKYYPYLGYENYDFKVP 259 Query: 421 SEQGCDVISRLKVRINEVYTALNMIDYGLDNLP----------------------GGPLM 458 D SR+ + +E++ +L +I LDNLP + Sbjct: 260 VYTDGDSWSRVAITFDEMFESLKIIRQALDNLPWDDRYIIDDRKLVLPPKQEVKHSMEAL 319 Query: 459 VEGFTYIPHRFALGFA------EAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYM 512 + F + H F + E+PRG+ + ++ K R R R ++ +L + Sbjct: 320 IHHFKLVHHGFDVPAGEVYVSIESPRGEIGFYVVSDGGNKPMRVRVRPPSFYAVYSLPVL 379 Query: 513 LRGNTVSDAPLIIGSLDPCYSCTDR 537 L G+ +SD I ++DP + DR Sbjct: 380 LEGHLLSDMVGAIATIDPVFGEVDR 404 >UniRef50_A8MBT0 NADH dehydrogenase (Quinone) n=1 Tax=Caldivirga maquilingensis IC-167 RepID=A8MBT0_CALMQ Length = 424 Score = 135 bits (339), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 108/378 (28%), Positives = 165/378 (43%), Gaps = 37/378 (9%) Query: 181 VVPIGPLHVTSDEPGHFRLFV--DGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSD 238 +V IGP H S GH R+ + G+ I++A YVHR +EKLAETR+ + + L + Sbjct: 43 LVLIGPAHPGS---GHMRIILRLKGDYIVEAVPDPGYVHRSVEKLAETRLFVHNIP-LVE 98 Query: 239 RVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFD 298 R Y ++E + VP RAQ +R I+ E+ R+ HL + G+ F G Sbjct: 99 RPTIAESSIMDHGYVRAIEELGQLDVPPRAQYLRVIMDELSRIGDHLYDTGILAVFLGHS 158 Query: 299 SGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQE 358 +G+M F +RE + +TGAR T + G+R D+ D + + + +++ E Sbjct: 159 TGYMWGFGLRELIVDALARMTGARITVSFVIPSGVRWDVHPDVLRYIYNMTFFIEKKIDE 218 Query: 359 LVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPME 418 L + P R +G L + VGP +RA G D R P+ Y L E Sbjct: 219 LGTIFTKNPVTVSRMKDVGVLTKDQCIKLGAVGPFLRACGVEYDNRRARPYAVYDQLEWE 278 Query: 419 VHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPL--------------------- 457 + D SR VR+ E+ +LN+I + N+P GP+ Sbjct: 279 IPVADEGDAYSRFLVRVEEIRQSLNIIRQAVKNIPEGPVIGNKLMTRVPPKEREKVAKDI 338 Query: 458 ------MVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQK--LYRWRCRAATYANWPTL 509 ++ G T +P A EA RG + +S+ D + YR R ++ N Sbjct: 339 RNYLFRLLIGLT-LPEGEATTLTEAARGT-LLYSLVSDGKSNVPYRLRMITPSWYNLKPF 396 Query: 510 RYMLRGNTVSDAPLIIGS 527 LRG + D P I GS Sbjct: 397 MESLRGYRLMDLPAIYGS 414 >UniRef50_Q30PI1 NADH-quinone oxidoreductase subunit D n=45 Tax=Epsilonproteobacteria RepID=NUOD_SULDN Length = 412 Score = 134 bits (338), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 107/403 (26%), Positives = 187/403 (46%), Gaps = 36/403 (8%) Query: 170 FINELGDKKNN--VVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETR 227 F N D+++N ++ GP H ++ L + E I+ A + Y+HRGMEK+AE Sbjct: 11 FENITFDREDNEMILNFGPQHPSAHGQLRLMLHLQQEMIVKAHPDIGYLHRGMEKMAEN- 69 Query: 228 MGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLN 287 M YNE +DR+ I A++ + +VE +G++VP RA++IR +LLE+ RL SHL Sbjct: 70 MIYNEFMPTTDRMDYIASSANNYGFALAVERLIGLEVPRRAKVIRMMLLEINRLMSHLFW 129 Query: 288 LGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQ 347 L G + F+ FR RE M + E GAR T+ IGG+ D+ + Q + Sbjct: 130 LATTALDIGAMTVFLFAFREREYLMDIMEGYCGARLTHAAIRIGGVPLDIQDTFITQLKT 189 Query: 348 LAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADH 407 ++ + +++ D+L + R +G + E+A + GPM+RASG A D R + Sbjct: 190 FLDKLPQNIKDYEDLLDTNRIWLMRMEEVGVISKEMALSWGCSGPMLRASGVAWDIRKEE 249 Query: 408 PFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLD----------------- 450 P+ Y + V D +R ++ + E+ + ++ +D Sbjct: 250 PYELYDEVEFRVPYSDKGDNFARYRIYMEEMRESAKILYQTIDMYEKCVKDNQTELMAHA 309 Query: 451 ----NLPGGPLMVEGFTYIPH--------RFALG----FAEAPRGDDIHWSMTGDNQKLY 494 + P +M + ++ + H R +G E+P+G+ + + Y Sbjct: 310 PKYISAPKLDIMTQNYSLMQHFVLVTQGMRPPVGEVYVATESPKGELGFYINSQGGPYPY 369 Query: 495 RWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 R + RA ++ + L +L G+ + D IIG+ + + DR Sbjct: 370 RLKLRAPSFWHTGILTDILPGHYIPDVVSIIGTTNIVFGEVDR 412 >UniRef50_C9LVK3 Proton-translocating NADH-quinone oxidoreductase, D subunit n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LVK3_9FIRM Length = 365 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 97/359 (27%), Positives = 171/359 (47%), Gaps = 3/359 (0%) Query: 174 LGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEV 233 + +K ++ +GP H ++ L + GE I A L Y+HRG+EKL E+R Y + Sbjct: 1 MAEKSTYILNMGPQHPSTHGVLQVELELSGERIERAKPILGYLHRGIEKLMESRT-YAQC 59 Query: 234 TFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACH 293 +D++ + ++ A+ T+VE GI+VP RA+ +R I E+ R+ SHL+ +G + Sbjct: 60 LPYTDKLDYVSSMNNNLAWCTAVEKLAGIRVPLRAEYLRVIAAELNRIASHLVFIGTLLN 119 Query: 294 FTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMR 353 G + F+ FR RE + + +++ GAR + +GG+ D ++ + +T+ + Sbjct: 120 DLGAATAFVYAFRDREKVLDLFDLICGARMSTSYIRLGGVAFDATEEFIEKTQAFLDYVP 179 Query: 354 REVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYG 413 ++E +++ R G+ + E A+ S G +RA+G A D R P+ Y Sbjct: 180 EMLEEYDNLITGNEIFYARMKGVSPMTAEEAKALSLSGANLRATGVAYDIRRVEPYSVYD 239 Query: 414 LLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPL--MVEGFTYIPHRFAL 471 L EV D R +VR+ E+ + +I L +P G +V P Sbjct: 240 RLDFEVPVGTLGDDWDRYEVRLKEIGESAKIIRQALKEMPEGSCRKVVSPNLRPPKGSVY 299 Query: 472 GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDP 530 E RG+ + ++ K YR R ++ N L + RG V+D+ ++ +LDP Sbjct: 300 HRVENTRGELGFYIVSDGTAKPYRVHIRRPSFVNLQALDPLCRGTLVADSVVVYSTLDP 358 >UniRef50_A9B5Q0 NADH-ubiquinone oxidoreductase chain 49kDa n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B5Q0_HERA2 Length = 368 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 102/361 (28%), Positives = 158/361 (43%), Gaps = 12/361 (3%) Query: 181 VVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGM-EKLAETRMGYNEVTFLSDR 239 V+P+GP H P L V+GE I D ++R Y +RG+ E+L TR + L Sbjct: 14 VLPLGPFHPDWQTPMRMVLRVEGEQIADVEFRDGYTNRGISERL--TRTTIPQGLHLVSH 71 Query: 240 VCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDS 299 +C AHS + ++E + I ERA +R + EVER HL + G Sbjct: 72 ICAADSHAHSLGFCLALEQLLKINASERAAALRLLACEVERATVHLSTMKEVLTILGLQR 131 Query: 300 GFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDM----IQTRQLAQQMRRE 355 ++ ++ + L G + GG+R+DL + +Q R+L + M R Sbjct: 132 DAEHVQKLHHGLFEVMQHLCGTSSPPNYIVPGGVRQDLSSTEQESMALQFRRLERLMYRF 191 Query: 356 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415 V +D + +R VG+G L E A F GPM RA+G D R D + Y Sbjct: 192 VDRFID----HRGVLRRCVGVGVLSREAAEQFGVRGPMARAAGIGFDARIDRAYGAYAQF 247 Query: 416 PMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAE 475 P +++ DV +RL + E + +L + L NLP G +P E Sbjct: 248 PPSRVTQERGDVYARLVIFSLEAFESLKLAIRVLANLPSGDWAGNAPDSVPQGSVTSNIE 307 Query: 476 APRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCT 535 + RG + +++ + KL R A + R +L G + DAPLII S C +C+ Sbjct: 308 SARG-TLRYTVQSNGVKLTSVRIDAPRQFDRLIARTILAGMNIDDAPLIIASASACTACS 366 Query: 536 D 536 + Sbjct: 367 E 367 >UniRef50_B8DS05 NADH dehydrogenase (Quinone) n=7 Tax=Deltaproteobacteria RepID=B8DS05_DESVM Length = 406 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 102/363 (28%), Positives = 166/363 (45%), Gaps = 9/363 (2%) Query: 181 VVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSD-- 238 ++ +GP H ++ L +DGE I+ A+ L Y+HR EK+AE + F+ + Sbjct: 47 ILNMGPQHPSTHGVLRVLLELDGEYIVRAEPVLGYLHRMHEKMAEVK---TPAQFMPNMG 103 Query: 239 RVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFD 298 RV + A + AY +VE GI++PERA+ +R I E+ R+ SHLL G G Sbjct: 104 RVDYLHALAWNWAYVGAVEKLAGIEIPERAEYLRVITCELNRISSHLLWWGAYLLDLGAF 163 Query: 299 SGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQE 358 + M F RE + + +++TG+R TY GG+ D + RQ +R + Sbjct: 164 TPIMYAFDDREMLLDLLQLMTGSRLTYSSFRFGGVYTDASPAFVQGVRQFIPHLRSRLPM 223 Query: 359 LVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPME 418 ++ + +R +G + ++ + GP+ R SG A D R P+ Y E Sbjct: 224 YTALVTENIILRRRIEEVGVIPQDMVTRYGASGPVARGSGIAYDVRRAEPYSVYDRFDYE 283 Query: 419 VHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALG---FA- 474 + ++R VR+ E+ +L +++ ++NLP G M + G FA Sbjct: 284 IPVRHEECSMARYMVRMAEIEQSLRIVEQAIENLPDGEHMHPKAPKPSFKLPAGESYFAV 343 Query: 475 EAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSC 534 E RG W + + YR + RA ++N RG ++DA I+GSLD Sbjct: 344 EGARGKIGVWIASDGGKTPYRVKLRAPGFSNLALFAECARGTLLADAVAILGSLDMVIPE 403 Query: 535 TDR 537 DR Sbjct: 404 IDR 406 >UniRef50_B2V8J2 NADH-quinone oxidoreductase subunit C/D n=15 Tax=Aquificales RepID=NUOCD_SULSY Length = 576 Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 123/494 (24%), Positives = 206/494 (41%), Gaps = 49/494 (9%) Query: 90 VRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLR 149 + V+ A P++T A W ERE DM+G+ G + R++L + +P +PLR Sbjct: 86 IIVKTWAENETLPTLTNLWKGAKWAEREAWDMFGIKFEGHENLVRMLLWETYP--YHPLR 143 Query: 150 KD------------SMDYRQRPAPTTDAETYEFIN---------ELGDKKNN-------V 181 KD S++ R Y+ ++ E+ KK V Sbjct: 144 KDFPLEGIKDTELPSLNETLRGENLEGLFNYDRMHTALPTMEDLEITQKKRMPVKTSQIV 203 Query: 182 VPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 241 + GPLH + F +DGE + D + +HRG+EKL E + + + +DR+ Sbjct: 204 LNWGPLHPGTHGTIWFLFDLDGEYVKQCDIIIGQLHRGVEKLGEN-VNWQQFIPYTDRMD 262 Query: 242 GICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGF 301 I + AY + E +GI+VPE+A+ IR ++ E+ R++SHLL LG G + F Sbjct: 263 YIAAINENHAYVLAAEKMLGIEVPEKAKWIRTMMAELSRINSHLLWLGTYALDLGALTMF 322 Query: 302 MQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVD 361 + FR RE M + E +TGAR T IGG+ DL + L + + + + + Sbjct: 323 LYTFREREKIMDIIEGITGARFTINYFRIGGVFADLPYGALDAIEHLIKDLPQRINDYET 382 Query: 362 VLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHS 421 +L R + + E + G + R SG D R + YG + ++ Sbjct: 383 LLTRNRVWLSRNKDVCVITEEDVYQYGLTGAVARGSGVPYDVRKIDKYDAYGEVEFDIPV 442 Query: 422 EQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFAL---------- 471 + D R VR+ E+ ++ +I+ + L F P L Sbjct: 443 GEKGDSYDRYLVRMEEMRQSIRIIEQCIAKLRKMSKDDPYFFQTPDEKKLKVTIDGRGMK 502 Query: 472 -------GFAEAPRGD-DIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPL 523 ++ PRG+ + D K +R R R+ + N + G ++DA Sbjct: 503 LPAGETYASSDNPRGELGFYIYNKKDGLKAHRMRIRSGAFYNLQVFTKAIIGRPIADAIT 562 Query: 524 IIGSLDPCYSCTDR 537 ++ ++DP TDR Sbjct: 563 LLSTIDPVVGETDR 576 >UniRef50_A0RMD1 NADH-quinone oxidoreductase subunit C/D n=5 Tax=Bacteria RepID=NUOCD_CAMFF Length = 561 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 137/564 (24%), Positives = 239/564 (42%), Gaps = 61/564 (10%) Query: 22 VLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSV-------LFGNDERKLNGHYAV 74 VL H+ T L+V + N + E V F+ G + L+ + E++ +++ Sbjct: 11 VLKHS-TTNGLLSVQINPNDIYEAVLFVRDNIGFEILADIVCVDNLYIDKEKR----FSL 65 Query: 75 YYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERR 134 YY+ K + + + +++D N+ SV +A WGERE D +G+ P+ +R Sbjct: 66 YYIF--RKISSENLCIYIDIDINQ-SVKSVESIYKSANWGERECFDQFGVKFENHPNLKR 122 Query: 135 LVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINE-----LGDKKNN-------VV 182 ++ D+ + YPLRKD + + +D E NE L ++N+ + Sbjct: 123 ILNHKDF--QGYPLRKDYPITKYQVLYESDDLVGEMKNEMQRAGLASEENDEFKTKYTFL 180 Query: 183 PIGPLHVTSDEPGHFRLFV--DGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 240 IGP H + G R FV DGE II + Y+HRG EK E Y ++ +DR+ Sbjct: 181 NIGPSHPATH--GTIRNFVALDGEKIISCVTEIGYLHRGFEKACENH-SYAQIIPYTDRL 237 Query: 241 CGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG 300 ++ Y +VE A+G+ +P+R +R IL E+ R+ H + LG G + Sbjct: 238 NYCSAMLNNVGYAKAVEEALGLNLPDRGIFMRVILGELARIIDHEVCLGAMFVDMGGLTN 297 Query: 301 FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELV 360 + + RE LTGAR T IGG+ D + + + + V + + Sbjct: 298 YWYLYNPRERIYNFLSKLTGARFTNSFARIGGMANDFYDGWKEELLAHLKDVEKGVDDTM 357 Query: 361 DVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVH 420 ++ R I +++ A + GP +RASG + D R D P+ Y V Sbjct: 358 ILIEKNRIFLDRVQNICKINANDALSYGFSGPNLRASGVSFDLRKDKPYYYYDSFDFSVP 417 Query: 421 SEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGF-TYIPHR----------- 468 D+ R+ VR E+ ++++I + +P G + V+ ++P + Sbjct: 418 VGSEGDIYDRMFVRFFEMRESISIIRQAIKLIPEGKISVDDKDVFLPSKDQVYSNIESLI 477 Query: 469 --FALGF-------------AEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYML 513 F L F +E G+ + + YR + R + M+ Sbjct: 478 NHFKLIFDGIKLPNGHFYSASEGANGELGFFIFSNSEPNPYRVKLRPPCFYALNAFSSMV 537 Query: 514 RGNTVSDAPLIIGSLDPCYSCTDR 537 +G+ ++D+ L +GSL+ DR Sbjct: 538 QGSLIADSILNLGSLNIIAGELDR 561 >UniRef50_A7C1S4 NADH-ubiquinone oxidoreductase subunit n=3 Tax=cellular organisms RepID=A7C1S4_9GAMM Length = 380 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 99/361 (27%), Positives = 166/361 (45%), Gaps = 8/361 (2%) Query: 184 IGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGI 243 GP H + ++ + G+ ++ Y+HRG EK+ E R+ V L R+C Sbjct: 21 FGPNHPGIEGNYALKVRLSGDEVVGVKADAGYLHRGFEKIMEERLWIQNVA-LVPRICVP 79 Query: 244 CGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQ 303 Y +VE G++VPERAQ IR ++LE+ R+ +HL G TG S Sbjct: 80 DPPPMEETYARAVEMLGGLEVPERAQWIRVMMLEMSRIAAHLFIAGGTSATTGQYSNMFW 139 Query: 304 FFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVL 363 R+ + + E LTGAR GG+RRD+ + + Q+ + + E D+ Sbjct: 140 GIADRDLILDLFEELTGARIYNMFITPGGVRRDIPDGFLDRLGQVLDFLEARLPEYDDLF 199 Query: 364 LSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQ 423 P +R GIG++ E A + GP +RA G D R + P++ Y L ++ +E Sbjct: 200 FDNPVFHRRAEGIGKMTQEQALAWGVTGPNLRACGLPFDVRRNDPYLVYEQLDFDIPTET 259 Query: 424 GCDVISRLKVRINEVYTALNMIDYGLDNLP--GGPL---MVEGFTY-IPHRFALGFAEAP 477 G DV+ R++VR +E+ + ++ + LP GP+ + + +P A EA Sbjct: 260 GGDVLDRIRVRRSEIIESTKILRQVIQRLPHVKGPIRCHLPNPLAWNVPEGDAYARTEAQ 319 Query: 478 RGDDIHWSMTGDNQKLYRWRCRAATYANW-PTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 +G+ ++++ K +R R + + L + G + D +I+ SLD C D Sbjct: 320 KGELGFYAVSTGGTKPWRVHVRGPSCMHAVQVLEKLCLGARIEDIAMIMFSLDACPPEVD 379 Query: 537 R 537 R Sbjct: 380 R 380 >UniRef50_C9RKY1 NADH dehydrogenase (Quinone) n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RKY1_FIBSS Length = 379 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 99/372 (26%), Positives = 173/372 (46%), Gaps = 14/372 (3%) Query: 176 DKKNNV----VPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYN 231 ++K+N + +GP H ++ L +DGE I++ Y+HRGMEK AE+ M Y Sbjct: 12 ERKSNTEEFFINMGPQHPSTHGALRLTLRMDGETIVEVVPHFGYIHRGMEKQAES-MSYL 70 Query: 232 EVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLA 291 + +SDR + ++ ++E M + VP R + IR +L E+ R+ SHL+ G Sbjct: 71 QYIAMSDRQDYLTAIQNNLGVVIALEKGMNVGVPLRGEYIRVMLQELGRIASHLVFYGCF 130 Query: 292 CHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQ 351 G + + F+ RE + E +TG+R T GG R D+ + + + Sbjct: 131 GGDLGGQTCLLFGFKEREMIHDILEEVTGSRLTTNFFRPGGSRYDVPDTFIPRVKAFLDH 190 Query: 352 MRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVG 411 M +++ L + +R++GIG L E A + GP++RASG D R +P+ Sbjct: 191 MEDTMKDYERFLSKNIIVLERSIGIGVLSKEDAIAYGCSGPVLRASGVNFDVRRANPYSI 250 Query: 412 YGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPG-GPLMVEGFTYIPHRFA 470 Y L +V D R K+RI E++ ++ ++ ++ P GP + P R Sbjct: 251 YDQLDFDVPVFHNGDCYDRYKIRIAEIHESMKILRQCVEKFPTEGPWRSKE---KPVRLP 307 Query: 471 LG--FAEAPRGDDIHWS---MTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLII 525 +G ++E ++ + +K YR R ++ + + M +G+ +SD I+ Sbjct: 308 VGRYYSEIETAKGLYATYVVAATTGEKPYRIHTRGPSFPHIAAINKMAQGHKISDLVTIM 367 Query: 526 GSLDPCYSCTDR 537 +LDP DR Sbjct: 368 ATLDPVIPEIDR 379 >UniRef50_A1ALP2 NADH-quinone oxidoreductase subunit D n=1 Tax=Pelobacter propionicus DSM 2379 RepID=NUOD_PELPD Length = 403 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 94/394 (23%), Positives = 172/394 (43%), Gaps = 28/394 (7%) Query: 171 INELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGY 230 + + D + +V +GP H + +DGE + AD Y+HRG EK +E Y Sbjct: 11 LEQTADPNHVLVNMGPSHPATHGTIQIIAALDGERVAKADIHCGYLHRGFEKESEHHT-Y 69 Query: 231 NEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGL 290 +++ +DR+ ++ AY VE +GI++ R +R +L E R+ H+ + Sbjct: 70 HKIIPFTDRLNYCSALNNNFAYVEGVEKLLGIELTPRCIYLRTLLAEYNRVADHVTCVAA 129 Query: 291 ACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQ 350 G + F+ +R+ + LTGAR TY +GG++ DL + + ++ Q Sbjct: 130 TVMEMGAMTAFLYLMTIRDYIFEHLNQLTGARLTYSFARVGGLKNDLPDGWLERLEEILQ 189 Query: 351 QMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFV 410 + + +L RT +G + PE A ++ GP++R++G D R D+P++ Sbjct: 190 FTEKYCGRIHGLLDRNRIFIDRTRDVGAMSPEHALNWGYTGPILRSTGAKIDIRKDNPYL 249 Query: 411 GYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEG--------- 461 Y L EV D R VR+ E+ +++M+ + LP GP+ ++ Sbjct: 250 AYADLDFEVPVGIKGDNYDRYYVRMREIDESISMVRQCMKKLPDGPVNIDDRRIMYPTKD 309 Query: 462 -----FTYIPHRFALGF-------------AEAPRGDDIHWSMTGDNQKLYRWRCRAATY 503 Y+ F L EAP G+ + ++ + + Y+ R+ ++ Sbjct: 310 KVYTKIEYLISHFKLVIDGIQVPAGEIYVSHEAPNGELGFYLISDGSGRPYKLHVRSPSF 369 Query: 504 ANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 A+ + +L G V+D GS++ DR Sbjct: 370 AHMGGMHTLLEGYQVADVIATFGSMNMIGGECDR 403 >UniRef50_A9FF67 NAD-dependent dehydrogenase subunit n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FF67_SORC5 Length = 495 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 99/365 (27%), Positives = 165/365 (45%), Gaps = 10/365 (2%) Query: 177 KKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFL 236 K+ + V +GP+H EPG FR GE + + L Y HRG+E+ R +T L Sbjct: 135 KEVHEVAVGPIHAGVIEPGSFRFMCLGEQVHHLEIHLGYQHRGVERRLLER-DPRSLTPL 193 Query: 237 SDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTG 296 + + G AH+ A+ +++E+ G ++ ++ RA+ LE+ER+ HL L G Sbjct: 194 IETIAGDTSVAHAWAHCSALESLAGCRLDIEIELARAVALELERVAMHLSTLAGMAADVG 253 Query: 297 FDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREV 356 F G + R+R T++ L G+R G GG+R L + + R ++ ++ Sbjct: 254 FLQGATTYGRLRTTAINTMMRLCGSRFGKGALRPGGVRMRLPPEALPDIRANLDLLQADL 313 Query: 357 QELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLP 416 + D L ++ R G L AR+ VG RASG D R Y ++P Sbjct: 314 PIINDCFLMARTVQHRLRSTGTLTTAQARELGLVGLAARASGIELDARHLVEHGAYSVVP 373 Query: 417 MEVHSEQGCDVISRLKVRINEVYTALNMID-----YGLDNLPGGPLMVEGFTYIPHRFAL 471 ++ D +R ++RI E+ +L+ + Y P P + E P + A+ Sbjct: 374 IQPVVLPDGDCWARARIRIAEIEASLSWVSAVIALYANWERP-RPSIGE---LAPDQLAI 429 Query: 472 GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPC 531 E RG+ +H TG + ++ ++ + + NW L +RGN +SD P+ S D Sbjct: 430 SLVEGFRGEVVHCVETGAHGEVVHYKVQDPSLRNWMGLALAVRGNEISDFPICNKSFDLS 489 Query: 532 YSCTD 536 Y D Sbjct: 490 YCGND 494 >UniRef50_A6LMC4 NADH-quinone oxidoreductase subunit D n=14 Tax=cellular organisms RepID=NUOD_THEM4 Length = 367 Score = 127 bits (320), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 94/361 (26%), Positives = 165/361 (45%), Gaps = 8/361 (2%) Query: 184 IGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGI 243 GP H ++V+G+ ++ A ++HRG EKL E R+ Y + + R+C Sbjct: 8 FGPNHPGMHGNFSVHMYVEGDTVVKARPLPGFLHRGFEKLMERRLWYQNLALIP-RICVP 66 Query: 244 CGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQ 303 + Y +VE I VPERAQ IR I+LE+ R+ +HL + G +G Sbjct: 67 EPDINELCYALAVEKIAKIDVPERAQWIRMIVLELARIANHLWSFSGIGGPIGLYTGSFW 126 Query: 304 FFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVL 363 R+ + + E LTGAR + + GG+R+DL + + + + ++ Sbjct: 127 GTADRDRILDIFENLTGARVYHMYIVPGGVRKDLTPKIEKMILETLDYIESRLPDYEKLI 186 Query: 364 LSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQ 423 L + R GI +LD E A + G +RA+G D R P++ Y + EV Sbjct: 187 LKNRIVHTRLKGIAKLDRETALEMGVTGVGLRATGVPYDIRKVDPYLFYDKVDFEVPFST 246 Query: 424 GCDVISRLKVRINEVYTALNMIDYGLDNLPGGPL---MVEGFTY---IPHRFALGFAEAP 477 D +R+ ++ E++ ++ ++ L+ +P G + + EG +P A E+ Sbjct: 247 DGDAFARVYLKFREIFQSIKIVKQALEKMPVGKVNTPISEGSALRFRVPKGQAYVHIEST 306 Query: 478 RGDDIHWSMTGDNQKLYRWRCRAATY-ANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 RG+ ++ ++ +K YR R A+Y + + L G + D P+ + ++D C D Sbjct: 307 RGEYGYYMVSDGGEKPYRVVVRGASYPQTFIGVEKYLPGTRIEDVPIWLSTMDVCAPEVD 366 Query: 537 R 537 R Sbjct: 367 R 367 >UniRef50_Q4P4N9 Putative uncharacterized protein n=1 Tax=Ustilago maydis RepID=Q4P4N9_USTMA Length = 498 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 111/432 (25%), Positives = 183/432 (42%), Gaps = 59/432 (13%) Query: 164 DAETYEFINELGDKKNN-----VVPIGPLHVTSDEPGHFRLFVDGENIIDADYR------ 212 D +E + E G +K+ V GP H + L ++GE I+ D Sbjct: 68 DKSAHEILREGGSRKDRSLRHFTVNFGPQHPAAHGVLRLILELNGEEILRTDLAICKANI 127 Query: 213 -------LFY-------------VHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAY 252 LF+ +HRG EKL E + Y + DR+ + + Y Sbjct: 128 ADSIQSCLFWPSGVCILQPHVGLLHRGTEKLIEYKT-YTQALPYFDRLDYVSMMTNELCY 186 Query: 253 TTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSM 312 + +VE + I+VPERA+ IR + E+ R+ +H + + G + F+ F RE M Sbjct: 187 SRAVEKLLNIEVPERAKWIRTMFGEITRILNHCMAVLSHVMDVGGLTPFLWAFEEREKLM 246 Query: 313 KMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQR 372 + E ++GAR GG+ DL + + A Q V E+ +V+ + R Sbjct: 247 EFYERVSGARLHAAYVRPGGVAYDLPPGLLDDIHKWATQFGSRVDEIEEVVTGNRIWKGR 306 Query: 373 TVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLK 432 T+GIG++ + A D+ G M+R SG D R P+ Y + +V + D R Sbjct: 307 TIGIGKVTAQEALDYGFSGVMLRGSGIPWDIRKVAPYDAYDQVEFDVPVGKNGDCYDRYL 366 Query: 433 VRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIP--------------HRFAL---GFA- 474 R+ E +L +I+ L+ +P G + V+ +P H F L G+A Sbjct: 367 CRVEEFRQSLRIIEQCLNKMPAGQIKVDDHKLVPPPRATMKESMESLIHHFKLFSEGYAV 426 Query: 475 ---------EAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLII 525 EAP+G+ + ++ + YR + RA +A+ +M R + + D II Sbjct: 427 PPGETYSAIEAPKGEMGVYLVSDGTNRPYRCKIRAPGFAHLAGADFMARHHYIPDMVAII 486 Query: 526 GSLDPCYSCTDR 537 G+LD + DR Sbjct: 487 GTLDLVFGEVDR 498 >UniRef50_A0L9R4 Membrane bound protein complex subunit mbxL n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L9R4_MAGSM Length = 391 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 100/357 (28%), Positives = 168/357 (47%), Gaps = 21/357 (5%) Query: 185 GPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGIC 244 GP H L + G+ I+DA + Y+HRG EKL E R + + + RVC Sbjct: 34 GPQHPGITGNMSVELTLCGDEIVDAKTHVGYLHRGFEKLMERRT-FIQCFPIVCRVCVPE 92 Query: 245 GFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQF 304 + Y +VE GI+ PERA+ IR ++LE+ R++S+L+ LG G Sbjct: 93 PDFNEYCYAAAVEELAGIECPERARWIRTLILEMGRINSYLMYLGGQSGAFGMGVIGQWT 152 Query: 305 FRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLL 364 +R+ + E LTGAR + L GG+R L + + + +++ ++++ DVL Sbjct: 153 TYIRDLMLDRFEELTGARIYHMFILPGGVRDGLPEGFEQRMEETLRELESTMKDVRDVLF 212 Query: 365 STPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQG 424 ++R+VG+G +DP + GP RA+G A+D R D P++ Y L E + Sbjct: 213 HNAVFKKRSVGVGVIDPAWLEPYGVTGPNARAAGVAKDVRIDQPYLVYPELSYEAIVGKD 272 Query: 425 CDVISRLKVRINEVYTALNMIDYGLDNLPG-GPLMV-----------EGFTYIPHRFALG 472 D+ +R VR ++ ++++I L +P GP+M +G TYI Sbjct: 273 SDIYTRADVRYRDLLQSVDLIRQILARMPHEGPVMAKLPNVLHWKIPQGETYI------- 325 Query: 473 FAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANW-PTLRYMLRGNTVSDAPLIIGSL 528 E RG+ ++ +T + R R +Y + L +M+ +SD ++ SL Sbjct: 326 RGECSRGEYGYYVVTDGSGYPRRINVRGPSYTHAVALLEHMIINQNISDVAGLMVSL 382 >UniRef50_A4WMP9 NADH dehydrogenase (Ubiquinone) n=5 Tax=Thermoproteaceae RepID=A4WMP9_PYRAR Length = 407 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 109/373 (29%), Positives = 162/373 (43%), Gaps = 36/373 (9%) Query: 185 GPLHVTSDEPGHFRLFV--DGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCG 242 GP H +S GH R V DG+ +++ YVHR MEKL ETR + L +R+ Sbjct: 33 GPQHPSS---GHTRFIVEVDGDIVVNVTPDPGYVHRTMEKLGETRHWIQNIP-LFERLSL 88 Query: 243 ICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFM 302 + AY +VE + V RAQ +R I+ E+ R+ +HL +LGL G +GFM Sbjct: 89 PDAINVTWAYAMAVERVAKLDVSPRAQYLRVIMAELSRISTHLYDLGLHAIMIGSSTGFM 148 Query: 303 QFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDV 362 F +RE +++ +++G+R T L GG+R QT+ + +++ E V + Sbjct: 149 WGFGLRELLVQLWAMVSGSRTTPTWVLPGGVRTAPPDAFYEQTKGFLDYLEKKIDEFVRL 208 Query: 363 LLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSE 422 ++ P R +G L E A GP R SG D R + + Y +V E Sbjct: 209 VVKNPVGYYRLKDVGYLSKEDAARLMATGPGARGSGIDWDARRVYKYGIYDEFEWDVCVE 268 Query: 423 QGCDVISRLKVRINEVYTALNMIDYGLDNLPG-GPLMVEGF------------------- 462 D ++R VRI E+ + +I LD +P GPL+ E Sbjct: 269 DAGDSLARTMVRICEIQQSAKIIRQALDRVPKDGPLVGEAVLHRIPPKQREKANEIIRLG 328 Query: 463 ----TYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLR---G 515 T +P +G E RG +K YR R + +W LR M+R G Sbjct: 329 ALYTTMLPQGEGVGVTEGGRGRYFFHVFGDGTEKPYRVRI---STPSWQNLRAMIRAFIG 385 Query: 516 NTVSDAPLIIGSL 528 + D P I GS Sbjct: 386 ARLMDLPAIYGSF 398 >UniRef50_D2R4P3 NADH dehydrogenase (Quinone) n=3 Tax=Planctomycetaceae RepID=D2R4P3_9PLAN Length = 401 Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 103/385 (26%), Positives = 171/385 (44%), Gaps = 32/385 (8%) Query: 181 VVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 240 +V +GP H ++ L DGE + + L Y+HR EK+ E + + +DR+ Sbjct: 21 LVNMGPQHPSTHGVLRLVLRTDGEIVSQVEPHLGYLHRCAEKIGENLTPRQWIPY-TDRM 79 Query: 241 CGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG 300 + + + +VE +G Q+ E+A+ +R I+ E+ R+ SHL+ +G G S Sbjct: 80 DYLAAMNMNLGWALTVEKLLGHQISEKARHLRVIIAEMGRIASHLVGMGAYGLDLGTFSP 139 Query: 301 FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELV 360 F+ FR RE + + E GAR TY GG DL K + + + +Q +QE Sbjct: 140 FLYAFREREKILDLFEEACGARLTYSYLTPGGATADLPKGWLQKCEEFLKQFEPVIQEYH 199 Query: 361 DVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRAD------HPFVGYGL 414 +L + +RT IG + E+A D+ GP++R SG D R D + GY Sbjct: 200 ALLTTNSIFVKRTAAIGIMSAEMAIDYGCTGPVLRGSGVDYDLRRDGEERYTEMYDGYAF 259 Query: 415 L----------------PMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLP----- 453 P+ + G D R VR+ EV +++++ ++ Sbjct: 260 EVIVSRNGHYPADHDYPPVPKEAVLG-DCWHRFYVRMLEVVQSIDLVRQAIERYSTASGD 318 Query: 454 -GGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYM 512 G P+ + T +P A E PRG + ++ N +R R R++++ N + Sbjct: 319 WGQPIKLT--TKLPKGEAYLETECPRGQMGFYIVSDGNAIPWRVRARSSSFCNLSITADL 376 Query: 513 LRGNTVSDAPLIIGSLDPCYSCTDR 537 RG ++D P I+GSLD DR Sbjct: 377 CRGCLIADVPAIVGSLDIVMGEIDR 401 >UniRef50_UPI0001C31275 NADH dehydrogenase I, D subunit n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31275 Length = 413 Score = 124 bits (311), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 104/419 (24%), Positives = 177/419 (42%), Gaps = 39/419 (9%) Query: 146 YPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGEN 205 Y R++S+ Y PA + +N +GP H ++ L ++GE Sbjct: 7 YRRREESISYSAEPAGMGLEQELMTVN-----------MGPHHPSTHGVLRLILTLEGEM 55 Query: 206 IIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVP 265 + D + YVH G+EK AE + Y +V + +R+ + + ++ A+ +VE + + VP Sbjct: 56 VRDVKPIIGYVHTGIEKTAEQK-AYWKVIPVVERMDYLSYYFNAYAFCGAVEKLLEVDVP 114 Query: 266 ERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTY 325 +RAQ +R I +E+ R+ SHL+ LG +C G + FR RE + + E+ +G R Sbjct: 115 KRAQYLRVIHMELNRIMSHLVWLGTSCIDLGAIGVWWYCFREREQVLDLFEMSSGQRMHT 174 Query: 326 GLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIAR 385 +GG+ D+ + + ++ + MR ++ +L QR G +D E Sbjct: 175 RYFQVGGVIEDIPRGWTERVKRFTKTMRERSEQYSALLDRNEIFLQRMRHTGTVDEETLL 234 Query: 386 DFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMI 445 GP++RA+G+ D R P+ Y + D R +VR E+ + +I Sbjct: 235 GLGVTGPLLRATGNPWDLRKAAPYCSYDDFRFRIPVGTEGDNYDRYRVRHAEILESCAII 294 Query: 446 DYGLDNLPGGPLMVE--------------GFTYIPHRFAL---GF----------AEAPR 478 D +D LP GP + E + H F L GF E+PR Sbjct: 295 DQAIDGLPEGPFITEDRKVALPPRHELATSMEALIHHFKLVTEGFRVPPGEVYHPIESPR 354 Query: 479 GDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 G+ + + + K R R ++ N R ++D + LDP DR Sbjct: 355 GELGCFVRSDGSSKPARVHMRDPSFVNLQATAAATRDTYIADLVATLAMLDPILGGVDR 413 >UniRef50_C6X0Z4 NADH-ubiquinone oxidoreductase chain D n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6X0Z4_FLAB3 Length = 420 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 96/377 (25%), Positives = 168/377 (44%), Gaps = 36/377 (9%) Query: 184 IGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGI 243 +GP H + L +DGE I+ ++ + Y+HR EK++E R + ++T L+DR+ Sbjct: 41 LGPTHPATHGIFQNVLTMDGERILHSEQTIGYIHRAYEKISERR-NFTQITTLTDRMNYC 99 Query: 244 CGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQ 303 ++ + +VE +G +VP+R +R I++E+ R+ H++ G+ G +G Sbjct: 100 SAPINNIGWHLTVEKLIGCEVPKRVDYMRVIMMELARIADHMVCNGVIAMDAGAITGLTY 159 Query: 304 FFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKD--DMIQTRQLAQQMRREVQELVD 361 F+ RE +M E + GAR T + IGG RD +++QT ++ + E Sbjct: 160 LFQEREKIYEMYEQVCGARMTTNMGRIGGFERDFNDKFHELLQT--WLKRFPKIWSEFCA 217 Query: 362 VLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHS 421 + RT+ +G + E A + GP +RA+G D R P+ Y + Sbjct: 218 LNERNRIFMDRTINVGPISAERALSYGFTGPNLRAAGVDYDVRVASPYSSYNDFDFIIPV 277 Query: 422 EQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLM--VEGFTYIPH------------ 467 D R VR EV+ +L +I+ NLP GP V F Y+P Sbjct: 278 GSAGDTYDRFMVRQQEVWESLKIINQAYKNLPDGPFHADVPEF-YLPEKADVYNNMEALI 336 Query: 468 ---RFALGFAEAPRGDDIHWSMTGDNQKL------------YRWRCRAATYANWPTLRYM 512 + +G + P G +++ + G N +L YR R + + M Sbjct: 337 YHFKIVMGETDVPIG-EVYNCVEGGNGELGFYLVSDGGRTPYRLHFRRPCFIYYQAYPEM 395 Query: 513 LRGNTVSDAPLIIGSLD 529 ++G +SDA + + S++ Sbjct: 396 IKGGMISDAVVTMCSMN 412 >UniRef50_Q1QP34 NADH-quinone oxidoreductase subunit D 1 n=9 Tax=cellular organisms RepID=NUOD1_NITHX Length = 396 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 102/392 (26%), Positives = 165/392 (42%), Gaps = 34/392 (8%) Query: 178 KNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLS 237 +N + GP H + L +DGE + D + +HRG EKL E + + + Sbjct: 7 RNFTINFGPQHPAAHGVLRLVLELDGEVVRRVDPHIGLLHRGTEKLIEHKTYLQALPYF- 65 Query: 238 DRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGF 297 DR+ + A+ + E + I +P+R Q+IR + E+ RL SHLLN+ G Sbjct: 66 DRLDYVAPMNQEHAFCLATEKLLNITIPKRGQLIRVLYCEIGRLLSHLLNVTTQAMDVGA 125 Query: 298 DSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQ 357 + + F RE M E +GAR +GG+ +DL + + Sbjct: 126 LTPPLWGFEEREKLMVFYERASGARMHANYFRVGGVHQDLPSKLLDDIWDFCDPFLKVCD 185 Query: 358 ELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPM 417 +L +L +QR VGI + A + G MVR SG A D R P+ Y L Sbjct: 186 DLEGLLTENRIFKQRNVGIAEVKLADAWGWGFSGVMVRGSGAAWDLRKAQPYECYSELDF 245 Query: 418 EVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNL----PGGPLMVEGFTYIP------- 466 ++ + D R VR+ E+ ++ ++ L+ L GP+ +P Sbjct: 246 DIPIGKHGDCYDRYLVRMEEMRQSVRIMKQCLEKLRLPEGQGPVATRDHKIVPPSRAEMK 305 Query: 467 ----------------HRFALG----FAEAPRGD-DIHWSMTGDNQKLYRWRCRAATYAN 505 HR G EAP+G+ ++ G NQ Y+ + RA ++A+ Sbjct: 306 RSMEAMIEHFKLYTEGHRVPAGEVYVAVEAPKGEFGVYLVSDGTNQP-YKCKIRAPSFAH 364 Query: 506 WPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + ++ RG+ ++D IIGSLD + DR Sbjct: 365 LSAMDFLTRGHMLADVSAIIGSLDIVFGEIDR 396 >UniRef50_C6WGH3 NADH dehydrogenase (Quinone) n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WGH3_ACTMD Length = 358 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 105/363 (28%), Positives = 159/363 (43%), Gaps = 25/363 (6%) Query: 179 NNVVPIGPLHVTSDEPGHFRLFV-DGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLS 237 + VV +GPLH ++ RL V D E I A+ + ++HRG EKL E R Y +V L+ Sbjct: 17 DRVVDLGPLHPSAHGAYRLRLTVRDDEVITSAEPLVGHLHRGAEKLFEVR-DYRQVLTLA 75 Query: 238 DRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGF 297 +R + F + A +VE G+ VP RAQ +RA+L E+ R+ +HL+ F Sbjct: 76 NRHDWLAAFCNELAVALAVERMTGMDVPPRAQWLRALLCELNRVMAHLV-------FLAP 128 Query: 298 DSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQ 357 + + R RE + E +G R + N IGG+R D + V Sbjct: 129 LTDPVAAARGREAVQAVLEEASGGRIHFMANRIGGLRED-----------VPAGWAERVA 177 Query: 358 ELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPM 417 +D + P + G+G L A GP+ RASG D R D P Y L + Sbjct: 178 GALDA-VEVPEVPTGLAGLGVLSRADALARGVTGPIGRASGVDLDLRRDDPLPAYRELDV 236 Query: 418 EVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGP--LMVEGFTYIPHRFALGFAE 475 G D +R+ ++++ A+ + L LPGGP L + P E Sbjct: 237 RPSVRDGGDAHARVACMVDDLAQAVALARECLRRLPGGPVNLRLPKAVKAPEGSVYTRVE 296 Query: 476 APRG-DDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSC 534 AP G +H + G+ +R + R ++ N L +L G V+ PL++GS Sbjct: 297 APLGVSGVHLASRGEKTP-WRLKLRTPSFNNVQALSALLPGTPVAQLPLVLGSFAVVVGD 355 Query: 535 TDR 537 DR Sbjct: 356 IDR 358 >UniRef50_O75306 NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial n=570 Tax=cellular organisms RepID=NDUS2_HUMAN Length = 463 Score = 114 bits (286), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 99/387 (25%), Positives = 168/387 (43%), Gaps = 28/387 (7%) Query: 178 KNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLS 237 KN + GP H + + + GE + D + +HRG EKL E + + + Sbjct: 78 KNITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYF- 136 Query: 238 DRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGF 297 DR+ + + AY+ +VE + I+ P RAQ IR + E+ RL +H++ + G Sbjct: 137 DRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGA 196 Query: 298 DSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQ 357 + F F RE + E ++GAR GG+ +DL M Q ++ + Sbjct: 197 MTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLD 256 Query: 358 ELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPM 417 EL ++L + RT+ IG + E A ++ G M+R SG D R P+ Y + Sbjct: 257 ELEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEF 316 Query: 418 EVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIP----------- 466 +V D R R+ E+ +L +I L+ +P G + V+ P Sbjct: 317 DVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLNKMPPGEIKVDDAKVSPPKRAEMKTSME 376 Query: 467 ---HRFAL---GFA----------EAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLR 510 H F L G+ EAP+G+ + ++ + + YR + +A +A+ L Sbjct: 377 SLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLD 436 Query: 511 YMLRGNTVSDAPLIIGSLDPCYSCTDR 537 M +G+ ++D IIG+ D + DR Sbjct: 437 KMSKGHMLADVVAIIGTQDIVFGEVDR 463 >UniRef50_A9BJL6 NADH dehydrogenase (Quinone) n=3 Tax=Thermotogaceae RepID=A9BJL6_PETMO Length = 369 Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 92/363 (25%), Positives = 161/363 (44%), Gaps = 10/363 (2%) Query: 184 IGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGI 243 +GP H ++VDG+ I+ A +HRG EKL E R+ N + + R+C Sbjct: 8 LGPNHPGMHGNFSVHMYVDGDTIVRARPMPGMLHRGFEKLMERRLWMNNLALIP-RICVP 66 Query: 244 CGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQ 303 + Y ++E GI+VPE+A IR I+LE+ R+ +HL++LG G +G Sbjct: 67 EPDINEMVYAMAIEELTGIEVPEKAHWIRMIILELARIANHLMSLGGIGGPVGLYTGPNW 126 Query: 304 FFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVL 363 R+ + + E +TGAR + + GG+R+DL ++ + + + + + E D++ Sbjct: 127 GLADRDLILDIFEEITGARIYHMYIVPGGVRKDLREETIEKIKSFLDYLENRLPEYEDLI 186 Query: 364 LSTPNMEQRTVGIGRLDPEIARDFSNVGPMVR-ASGHARDTRADHPFVGYGLLPMEVHSE 422 L ++RT L E+ + G +R A G A D R P+ Y + V + Sbjct: 187 LKNSLFQRRTKDKLLLPAEVVWELGVTGIGMRSAVGEAYDIRKVDPYARYDQVEFYVPTA 246 Query: 423 QGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFT-------YIPHRFALGFAE 475 D +R+ + E Y ++ +I L+ +P + + +P E Sbjct: 247 NYSDGYTRVYFKYLETYQSIKIIRQVLEKMPQKGKVWNKISNGSALRWRVPKGQVYTHVE 306 Query: 476 APRGDDIHWSMTGDNQKLYRWRCRAATYAN-WPTLRYMLRGNTVSDAPLIIGSLDPCYSC 534 RG+ ++ ++ K YR R A+Y + L G + DA L + ++ C Sbjct: 307 CARGEYGYYMVSEGEDKPYRVAVRGASYPQGLLGVEKYLPGTRIEDAALWMDTMGVCPPE 366 Query: 535 TDR 537 DR Sbjct: 367 IDR 369 >UniRef50_B3ES55 NADH-quinone oxidoreductase subunit D n=19 Tax=Bacteroidetes/Chlorobi group RepID=NUOD_AMOA5 Length = 403 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 95/374 (25%), Positives = 166/374 (44%), Gaps = 18/374 (4%) Query: 181 VVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 240 ++ IGP H + + +DGE ++D L Y+HR EK A T + YN+ DR+ Sbjct: 31 LINIGPQHPATHGILRLEVILDGEIVVDVVPHLGYLHRCFEKHAAT-LPYNQTIPFVDRL 89 Query: 241 CGICGFAHSTAYTTSVENAMGI--QVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFD 298 + A+ VE+ +G+ ++P R + IR ++ E+ RL SH + +G G Sbjct: 90 DYLAAMNSEHAFAMGVEHMLGLTGKLPRRVEYIRVLMAELNRLASHFMAIGTYGIDLGAF 149 Query: 299 SGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQE 358 + F+ R RE +++ E +GAR Y IGG+ DL + + ++ +++E Sbjct: 150 TSFLWLMRDREYILRLFEWASGARMLYNYIWIGGLYYDLPVGFEERCLEFITYLKPKLEE 209 Query: 359 LVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPME 418 + +L+ +RT +G L A + GP++RASG D R + Y L + Sbjct: 210 INQLLIDNTLFIKRTANVGVLPLATAINHGVSGPILRASGLRLDLRRIDGYSIYPELSFD 269 Query: 419 VHSEQGC-----DVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFT---YIPHRFA 470 + +G D R V+ E ++ + + L L F +P + Sbjct: 270 IPIGEGLMGHVGDCWDRTWVKFQECKESIKITEQCLVRLTSDLKRTADFNPQKMVPKKVR 329 Query: 471 LGF------AEAPRGDDIHWSMTGDN-QKLYRWRCRAATYANWPTLRYMLRGNTVSDAPL 523 AE PRG+ + DN K R + R+++++N + + +G ++D Sbjct: 330 TKAQDCYIRAENPRGELGFFFRASDNGDKPIRCKARSSSFSNLSVISSIAKGQVLADLIA 389 Query: 524 IIGSLDPCYSCTDR 537 IIGS+D DR Sbjct: 390 IIGSIDIVLGEIDR 403 >UniRef50_A3ZL03 NADH dehydrogenase (Ubiquinone) n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZL03_9PLAN Length = 418 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 103/388 (26%), Positives = 166/388 (42%), Gaps = 37/388 (9%) Query: 181 VVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 240 +V +GP H ++ L DGE + +A + Y+HR EK+ E + + +DR+ Sbjct: 37 LVNMGPQHPSTHGVLRLVLRTDGEVVSEATPHIGYLHRCAEKIGENLTPRQWIPY-TDRM 95 Query: 241 CGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG 300 + G + + +VE + +PE+A+ +R I+ E+ R+ SHL+ +G G S Sbjct: 96 DYLAGMNMNLGWALAVEKLIDYDLPEKARHLRVIIAELNRIASHLVGMGTYGLDLGSFSP 155 Query: 301 FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELV 360 F+ FR RE + + E GAR TY GG DL + + Q + + Sbjct: 156 FLYAFRERERILDLLEDACGARLTYSYLTPGGATADLPPGWLQKLTGFLDQFEPVILDYH 215 Query: 361 DVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHP------FVGYGL 414 +L + +RT IG + E+A D+ GP++R SG D R D + GY Sbjct: 216 ALLTNNAIFIKRTANIGVMSAEMAIDYGCSGPVLRGSGVDYDLRRDGEERYTSLYAGYAF 275 Query: 415 LPMEVHSEQG------------------CDVISRLKVRINEVYTALNMIDYGLDNLP--- 453 EV E+ D R VR+ EV A++++ G++ Sbjct: 276 ---EVIVEKNGSYPRDHEYPPVPSDAVLGDCWHRFYVRMLEVIQAIDLLRQGIEKYSQAT 332 Query: 454 ---GGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMT-GDNQKLYRWRCRAATYANWPTL 509 G P+ + T +P A E PRG + ++ G R R R++ + N Sbjct: 333 GDWGTPIKLA--TKLPKGEAYLETECPRGQMGFYIVSDGSGSIPLRARARSSCFCNLSVA 390 Query: 510 RYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + R ++D P IIGSLD DR Sbjct: 391 PELCRDCLIADVPAIIGSLDIVMGEIDR 418 >UniRef50_C1AB36 NADH-quinone oxidoreductase chain D n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AB36_GEMAT Length = 412 Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 77/280 (27%), Positives = 131/280 (46%), Gaps = 1/280 (0%) Query: 181 VVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 240 VV IGP H + +DGE ++ D Y+HRG EK E +N + ++ DR+ Sbjct: 30 VVNIGPSHPATHGTVQIIAELDGEKVLRTDVHCGYLHRGFEKECEDHTWHNLIPYV-DRL 88 Query: 241 CGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG 300 ++ AY VE MGI++ R + +R +L E RL HL + + G + Sbjct: 89 NYCSALINNFAYCDGVEQLMGIEITPRTKYLRTLLSEYSRLADHLTCVAASLMELGAMTA 148 Query: 301 FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELV 360 F+ VR++ + LTGAR TY IGG+ D+ + ++ + + + + Sbjct: 149 FLYLVTVRDSMYEHLAALTGARVTYSYGRIGGLAADVPDGWFKRLGEILRDYEQYAERVH 208 Query: 361 DVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVH 420 ++ R +G ++ A + GP++R++G RD R D P++ Y L +V Sbjct: 209 GLVDRNRIFIDRLRNVGTINTADALHWGFTGPVLRSTGAKRDLRKDTPYLAYAELDFDVP 268 Query: 421 SEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVE 460 D R VR+ E+ ++ MI +D +P GP+ V+ Sbjct: 269 VGIFGDNYDRYYVRMREMDESVYMIRQLMDMIPDGPINVD 308 >UniRef50_A9G9T3 NADH-quinone oxidoreductase subunit D 2 n=5 Tax=Myxococcales RepID=NUOD2_SORC5 Length = 388 Score = 111 bits (277), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 100/365 (27%), Positives = 162/365 (44%), Gaps = 14/365 (3%) Query: 184 IGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGI 243 +GP H ++ F + DGE I A + Y+HR +EK+ E R Y+ +DRV I Sbjct: 27 MGPHHPSTHGVLRFVISTDGEIIRKAVPDVGYLHRSIEKIGE-RCTYSGFMPYTDRVDYI 85 Query: 244 CGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQ 303 + A+ ++ E MGI+VP+RAQ +R I E+ R+ SH++ LG G + F Sbjct: 86 AAMFANEAWASACEKLMGIEVPKRAQYLRVISCELNRIGSHMIALGAMAMDVGAVTPFPW 145 Query: 304 FFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVL 363 R RE E L GAR T+ + IGG+ D+ K + + + + E D L Sbjct: 146 ALREREYINDFIEELCGARLTFNYHRIGGVSFDMPKGWADKVKHWLDRFEPIMVEF-DRL 204 Query: 364 LSTPNME-QRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSE 422 +S ++ +R + + E A+D+ VGP +R SG D R + + Y L +V Sbjct: 205 ISLNDIFIKRLANVAVVTAEEAKDWGLVGPNLRGSGVKWDLRKEDAYSVYPELEFDVPVG 264 Query: 423 QG-----CDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRF-----ALG 472 +G D R VR+ E + ++ LD + P + +P + A Sbjct: 265 RGRYGTVGDCWDRFYVRVEECRESAKILRQALDKIDEHP-EDDILGKLPKKMRPDGEAYA 323 Query: 473 FAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCY 532 E+ RGD + + ++ YR R R ++ + G ++D +I S D Sbjct: 324 RIESARGDMGCYVIGRGAEEAYRARFRTGSFTAMAMIEAKSPGLFLADLVALIASFDVVA 383 Query: 533 SCTDR 537 DR Sbjct: 384 PEIDR 388 >UniRef50_A6UVJ6 Hydrogenase, component E-formate hydrogenlyase subunit 5-like protein n=1 Tax=Methanococcus aeolicus Nankai-3 RepID=A6UVJ6_META3 Length = 518 Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 104/438 (23%), Positives = 187/438 (42%), Gaps = 32/438 (7%) Query: 115 EREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINEL 174 ERE+ + YG++P P + + ++ K + D Y F E+ Sbjct: 96 EREIAEQYGIVPKNHPWLKSVRYHKNY--------KGAPDVFGNNYTAPIPGNYPFY-EV 146 Query: 175 GDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVT 234 G ++ + V +GP+H EPGHFR GE I+ + + Y HRG+EK + EV Sbjct: 147 GGEEIHQVAVGPVHAGIIEPGHFRFNCIGETILSLEIQHGYQHRGIEK--QILNCKKEVL 204 Query: 235 -FLSDRVCGICGFAHSTAYTTSVE--NAMGIQVPERAQMIRAILLEVERLHSHLLNLGLA 291 + + + G +S ++ ++E + + E R +LLE+ER+ +H+ +G Sbjct: 205 PLIIESIAGDTVIGNSICFSEAIEWLSNCNYEANEPLYNYRRLLLEIERIANHIGTMGGL 264 Query: 292 CHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQ 351 G+ + R+R + M ++ G R G L D + + + +Q Sbjct: 265 AGDVGYIPTASYYGRIRGDFLNMFVLICGNRFGRSSVRPFGAPFKLSDDHIKELIKRFEQ 324 Query: 352 MRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFV- 410 +++EV ++ +++L P + R G +D + A+ VGP RASG D R Sbjct: 325 LKKEVIDVGNLMLDNPEVLGRFDYTGIVDTKTAKLIGLVGPAGRASGIKYDVRKSFSKAK 384 Query: 411 -----GYGLLPMEVHSEQGCDVISRLKVRINEVYTA-------LNMIDYGLDNLPGGPLM 458 G GL+ + + V SR K E + L + D+ +++ Sbjct: 385 NIYNRGIGLV-----ARKDGAVSSRAKTYFYETLDSIEFCIELLKVADFQINDSADKLEK 439 Query: 459 VEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTV 518 +E P+ F + EA RG+ H +T +N + R++ + ++ NW L ++R + Sbjct: 440 IEKTVLKPNSFIITMEEAWRGELSHCIITDENGNIIRYKIKDPSFHNWTALELVVRNEGI 499 Query: 519 SDAPLIIGSLDPCYSCTD 536 D PL S + Y D Sbjct: 500 YDFPLCNKSFNLSYCGFD 517 >UniRef50_B3T914 Putative Respiratory-chain NADH dehydrogenase, 49 Kd subunit n=2 Tax=environmental samples RepID=B3T914_9ARCH Length = 384 Score = 108 bits (269), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 100/366 (27%), Positives = 160/366 (43%), Gaps = 23/366 (6%) Query: 176 DKKNNVVPIGPLHVTSDEPGHFRLF--VDGENIIDADYRLFYVHRGMEKLAETRMGYNEV 233 D + + +GP H S GH R+ VDG+ I+ D YVHRG EK+AE R + Sbjct: 22 DDRIMTLNVGPQHPGS---GHMRIILKVDGDYIVHCDPDPGYVHRGEEKMAEYRNYITNI 78 Query: 234 TFLSDRVC-GICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLAC 292 L V C + Y VE +G++VPERA+ IR I E+ R L + Sbjct: 79 PHLERPVIHDSCNILY--PYCLGVEELLGLEVPERAKYIRVIAAELNRCVYTQYWLAIYG 136 Query: 293 HFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQM 352 F G + FM RE + + + +TGAR T+ + GG+R D+ + + Sbjct: 137 IFLGHSTMFMWPMGDRELVIDLLDKMTGARVTHSYFVPGGVRNDIPPNFEDVCLRQVNYF 196 Query: 353 RREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGY 412 + ++E D+ P + RT G L E A G ++RASG D R P+ Y Sbjct: 197 EKRLKEYADMFYDNPILISRTKDTGILSREDAIKLGTTGSVLRASGVDFDIRKKEPYDVY 256 Query: 413 GLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLP-GGPLMVE-------GFTY 464 L + + + D +R K+ +++ + +I L +P G + V+ G T Sbjct: 257 EELDFQTNVLKEGDSYARSKIPWLDMFESCRIIRDALKKMPKSGSVRVKLKPNPKGGDTE 316 Query: 465 IPHRFALGFAEAPRGD-DIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPL 523 + R E+ RG +H G Q YR + ++ N + ++L G + + P Sbjct: 317 VYRR-----VESGRGSLGMHIISRGKPQP-YRLKISVGSFRNLIAMPHLLTGEMLGNMPA 370 Query: 524 IIGSLD 529 + SL+ Sbjct: 371 VYWSLN 376 >UniRef50_B8GAR8 NADH-ubiquinone oxidoreductase chain 49kDa n=3 Tax=Chloroflexus RepID=B8GAR8_CHLAD Length = 365 Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 103/348 (29%), Positives = 150/348 (43%), Gaps = 24/348 (6%) Query: 196 HFRLFVDGENIIDADYRLF-----YVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHST 250 L V+GE I D +YR Y R ++ G + +VC C AH+ Sbjct: 18 QLTLTVEGEYIRDVEYRPATGDGAYAQRLLQG------GGESAVRAAAQVCPYCSVAHTL 71 Query: 251 AYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRET 310 A + ++E I P RAQ IR I+ E+ER SH+ L G +S R+ + Sbjct: 72 ALSLALEALAEITAPLRAQAIRVIVAELERAASHMNTLAALIAALGLNSAT----RLSQL 127 Query: 311 SMKMAEILTGARKTYGLNLI--GGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPN 368 ++ IL + I GG+ + + T + ++ + EL + + Sbjct: 128 ETRIRSILLALLGHHEAAYIRPGGLAEPPDEARLADTERAINELLPHMIELAEQTIPRRT 187 Query: 369 MEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVI 428 + R V IG L E AR F GP+ RAS D R D P+ GY +L + EQG DV Sbjct: 188 LVARMVDIGVLTTEAARQFGLAGPLGRASDITTDQRIDAPYAGYTVLTPALVVEQGGDVH 247 Query: 429 SRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFA--EAPRGDDIHWSM 486 +R V + E +L + L NLP G E +T R G A EAPRG + +++ Sbjct: 248 ARAVVLLIEAIESLRLAVRWLHNLPIG----ETYTAFTLRLGEGTATVEAPRG-PLRYTV 302 Query: 487 TGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSC 534 D Q+L A + R +L+ V D LI S DPC +C Sbjct: 303 RSDGQRLTAVEIGIAPQLDRLLARTLLQNAAVDDTLLIAISTDPCTAC 350 >UniRef50_A9A347 NADH dehydrogenase (Quinone) n=3 Tax=Thaumarchaeota RepID=A9A347_NITMS Length = 378 Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 98/363 (26%), Positives = 157/363 (43%), Gaps = 16/363 (4%) Query: 176 DKKNNVVPIGPLHVTSDEPGHFRLFV--DGENIIDADYRLFYVHRGMEKLAETRMGYNEV 233 D++ + +GP H S GH R+ V DG+ I+ D YVHRG EK+AE R V Sbjct: 15 DERIMTLNVGPQHPGS---GHMRIVVQIDGDYIVACDPDPGYVHRGEEKMAEYRNYITNV 71 Query: 234 TFLSDRVC-GICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLAC 292 L V C + Y E +GI+VPERA+ +R I E+ R + L + Sbjct: 72 PHLERPVIHDSCNVLY--PYVLGAEEILGIEVPERAKYVRVICSELNRCIYTMYWLAIYG 129 Query: 293 HFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQM 352 F G + FM RE + + E ++GAR T+ + GG+R DL + + Sbjct: 130 IFLGHSTMFMWPAGDRELLIDLMEKVSGARVTHAHFIPGGVRNDLPANFEDVCLRQVNYF 189 Query: 353 RREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGY 412 + ++E V P + RT G L E A + G ++RASG D R P+ Y Sbjct: 190 EKRIKEYAAVFYDNPILISRTQDTGVLSRENAIRYGTTGSVLRASGVDYDLRVKAPYDVY 249 Query: 413 GLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALG 472 L + + + D +R KV ++ + N+I L +P + P+ G Sbjct: 250 DELDVHTNVLKEGDSYARSKVPWLDMMESCNIIRQALQKMPKSGSVRTKLK--PNPKTKG 307 Query: 473 FA------EAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIG 526 A E+ RG + ++ + YR + ++ N + +L G + + P + Sbjct: 308 PATVYKRVESGRGSLGCYIVSDGKTEPYRVKMSVPSFRNLLAMPNLLIGEKLGNMPSVYW 367 Query: 527 SLD 529 SL+ Sbjct: 368 SLN 370 >UniRef50_Q0BPG8 Formate hydrogenlyase subunit 5 n=1 Tax=Granulibacter bethesdensis CGDNIH1 RepID=Q0BPG8_GRABC Length = 517 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 105/401 (26%), Positives = 169/401 (42%), Gaps = 29/401 (7%) Query: 101 YPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWP---DELYPLRKDSMDYRQ 157 +P+++P PAA W ER +RD++G D R + WP Q Sbjct: 77 FPALSPFRPAAAWQERAIRDLWGYEAEHGVDSRPWLDHGRWPISAPLSPRPGPPLPPPEQ 136 Query: 158 RPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVH 217 T F++ D + IGP+H EP RL + G I A++RL Y H Sbjct: 137 AEWRMTSPFASSFVSSRPDIALHERSIGPVHPLMREPAQLRLHLHGTLIRQAEWRLGYTH 196 Query: 218 RGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLE 277 RG++ L + + ++ R+ G AH A+ + E A+ ++ P RA ++R ++ E Sbjct: 197 RGIQWLMRGKP-LRDAIRIAARITGDAALAHGLAFARAAEAALRLEPPPRALLLRGLMNE 255 Query: 278 VERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDL 337 +ER HL L G D+ + RE ++ + G R L + GG+ DL Sbjct: 256 LERCAVHLHVLAATASAAGADTYAAKLSAWRERLLRAIQEAFGNRMMIDLLIPGGVLTDL 315 Query: 338 LKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTV-----GIGRLDPEIARDFSNVGP 392 L ++T + Q + R + EL++ + ++ + G L A + GP Sbjct: 316 LDGTALET--VLQALARTMPELIEGYETAASLSGHGLCACLRGCAVLSGSDAVSLAVPGP 373 Query: 393 MVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNL 452 RASG D R +G + V E G D +R++VR+ E+ +L + L++L Sbjct: 374 AGRASGRPHDLRTTWQQAPHGTVHRLV-LENG-DADARMRVRLAEIQESLRLALLFLESL 431 Query: 453 PGGPLM---------VEGFTYIPHRFALGFAEAPRGDDIHW 484 P GP+ G Y G E+ RG HW Sbjct: 432 PVGPIANPMPIGTGNASGEGY-------GGVESARGACWHW 465 >UniRef50_B0SCU7 Metal (Ni/Fe) hydrogenase, large subunit n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SCU7_LEPBA Length = 475 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 94/371 (25%), Positives = 166/371 (44%), Gaps = 23/371 (6%) Query: 184 IGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGM-EKLAETRMGYNEVTFLSDRVCG 242 +GP+H EPGHFR VDGE I RL + RG+ + L M N+V S+ + G Sbjct: 109 VGPIHAGIIEPGHFRFIVDGEVIRHLTIRLGFQKRGIRDHLLHKAM--NQVMPYSEMISG 166 Query: 243 ICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFM 302 ++ A++ E+ I V + ++ R+ILLE+ER+ H+ +LG G+ + Sbjct: 167 DTSVGYALAFSKIYEDLYEIPVSKEIRLFRSILLELERIAVHIGDLGGISEDIGYYPLYG 226 Query: 303 QFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDL-----LKDDMIQTRQLAQQMRREVQ 357 R ++ + E TG R +G +++ R L K +QL ++++ Sbjct: 227 VCVTERGAALGLMEAWTGHR--FGKSVVRPGRLYLNNRLNAKQAKESFKQLKNAYIKKIR 284 Query: 358 ELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADH-PFVGYGLLP 416 + LS +++R G G + ++F VG + R +G D R ++ + + LP Sbjct: 285 PQILRALSISTLKERMQGCGFISEMDVQNFGFVGMVARMAGVNEDLRIENFDYPNWNPLP 344 Query: 417 M-EVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHR------- 468 + E H DV +R+ +R +E+ +++ I+ ++ + L+ E +P++ Sbjct: 345 LKEEHHHYNGDVWARMYIRYSEIEQSMDWIEKTMEEI-NWDLLWEPKVKVPNQEILTKRT 403 Query: 469 ---FALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLII 525 F EA RG + +N + R + NW L +RG V+D PL Sbjct: 404 KPGFYYSAVEAWRGPLLVALQFDENGLVNNSYIRDPSVLNWHALELAVRGEQVADFPLNN 463 Query: 526 GSLDPCYSCTD 536 S + Y D Sbjct: 464 KSFNLSYVGFD 474 >UniRef50_D1HPS0 Whole genome shotgun sequence of line PN40024, scaffold_116.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1HPS0_VITVI Length = 441 Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 69/210 (32%), Positives = 101/210 (48%), Gaps = 3/210 (1%) Query: 249 STAYTTSVENAMG-IQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRV 307 + A T + +G IQVP+RA IR I+LE+ R+ SHLL LG G + F FR Sbjct: 3 TEAITANAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGVQTPFFYIFRE 62 Query: 308 RETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTP 367 RE + E TG R + IGG+ DL + + V E +++ P Sbjct: 63 RELVYDLFEATTGMRMMHNYFRIGGVVVDLPHGWIDKCLDFCDYFLTGVAEYQKLIMRNP 122 Query: 368 NMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARD-TRADHPFVGYGLLPMEVHSEQGCD 426 +R G+G + E A ++ GPM++ASG D + DH + Y EV ++ D Sbjct: 123 IFLERVEGVGIIGVEEAINWGLSGPMLQASGIQWDLLKVDH-YECYDEFDWEVQWQKEGD 181 Query: 427 VISRLKVRINEVYTALNMIDYGLDNLPGGP 456 +SR VRI E+ + +I L +PGGP Sbjct: 182 SLSRYLVRIGEMMAFIKIIQQALKGIPGGP 211 >UniRef50_A7H9V5 NADH-quinone oxidoreductase subunit D 2 n=8 Tax=Myxococcales RepID=NUOD2_ANADF Length = 431 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 84/371 (22%), Positives = 149/371 (40%), Gaps = 28/371 (7%) Query: 177 KKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFL 236 K V +GP H + +DGE I + ++HRG EK E + + + Sbjct: 45 SKLMTVNLGPSHPAMHGVTRAVVELDGEMIRSMKLDIGFLHRGFEKSCEN-VTWTQCFPY 103 Query: 237 SDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTG 296 +DR+ + ++ + +VE + VPERA+ +R + E+ R+ HL +G G Sbjct: 104 TDRLNYVSSIMNNVGFALAVEKLCKLDVPERAKYLRVVTSEIHRICDHLTLVGAMAMELG 163 Query: 297 FDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREV 356 + F+ R+ L GAR T IGG+ RD + +T + +++ V Sbjct: 164 AMTVFLYAIEARDIIYDRLAELCGARLTSNYGRIGGVARDTPDGWIEKTEKTLDRVKGYV 223 Query: 357 QELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLP 416 E+ ++ RT G G + A + GP +RASG D R P++ Y + Sbjct: 224 DEIDQLVSRNRIFIDRTRGTGVVPRADAIELGFTGPCLRASGEPYDLRKAAPYLVYDRID 283 Query: 417 MEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTY------------ 464 ++ D R ++R+ E+ + +I + G + V+ F Y Sbjct: 284 FDIPVGTNGDNFDRFQMRMEEMRQSDRIIRQCFAQMEPGEIAVQDFRYVLPPKPLVYGTI 343 Query: 465 ---------------IPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTL 509 +P A G+ EA G+ + ++ + Y+ RA + L Sbjct: 344 EGLMAHFKIIMEGIQVPAGEAYGYTEAANGELGFYVVSDGGGRPYKLGLRAPGWPMLAAL 403 Query: 510 RYMLRGNTVSD 520 +M G+ +SD Sbjct: 404 PFMSVGSLLSD 414 >UniRef50_UPI000186E11F NADH-ubiquinone oxidoreductase 49 kDa subunit, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186E11F Length = 369 Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 74/261 (28%), Positives = 119/261 (45%), Gaps = 14/261 (5%) Query: 143 DELYPLRKDSMDYRQR---PAPTTDAETYEFINELGDKKNN------VVPIGPLHVTSDE 193 ++ +P R+ +YR+ P P D +T E N D + N V+ GP H + Sbjct: 41 NKWFPDRRYFEEYRKDHPIPQPLIDRDTVEKYNPFLDDEPNTEIQNVVLNFGPQHPAAH- 99 Query: 194 PGHFRLFVD--GENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTA 251 G RL ++ GE + D + +HRG EKL E + Y + DR+ + + Sbjct: 100 -GVLRLILELRGERVAKCDPHIGLLHRGTEKLIEYKT-YTQALPYFDRLDYVSMMCNEQC 157 Query: 252 YTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETS 311 Y+ +VE + I+VP RA+ IR + E+ R+ +HL+ +G G + F FF RE Sbjct: 158 YSLAVEKLLNIEVPLRAKYIRTMFAELTRILNHLMGIGTHILDVGALTPFFWFFEEREKL 217 Query: 312 MKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQ 371 M+ E ++GAR GG+ +DL M Q + + ++ DVL + Sbjct: 218 MEFYERVSGARMHAAYIRPGGVSQDLPLGLMDDIHQFLTKFGSILDDVDDVLTNNRIWVD 277 Query: 372 RTVGIGRLDPEIARDFSNVGP 392 RT IG + E A ++ P Sbjct: 278 RTQNIGVISAEDALNYGYTVP 298 >UniRef50_C0SF51 NADH-ubiquinone oxidoreductase 49 kDa subunit n=1 Tax=Paracoccidioides brasiliensis Pb03 RepID=C0SF51_PARBP Length = 447 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 97/398 (24%), Positives = 174/398 (43%), Gaps = 45/398 (11%) Query: 161 PTTDAETYEFINELGDKK---NNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVH 217 P + AE +E+G+ + + V GP H + L ++GE I+ AD + +H Sbjct: 74 PGSYAEPSALESEVGNGRKIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLH 133 Query: 218 RGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLE 277 RG EKL E + + + DR+ + + ++ +VE + I++PERA+ IR + E Sbjct: 134 RGTEKLIEYKTYMQALPYF-DRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKWIRTMFGE 192 Query: 278 VERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDL 337 + R+ +HL+++ G + F+ F RE M+ E ++GAR GG+ +D+ Sbjct: 193 ITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYIRPGGVHQDI 252 Query: 338 ---LKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMV 394 L DD+ Q + +++ ++S G+L+P R F + + Sbjct: 253 PLGLLDDIYQWATHSATASTKLKNCSPKIVS-----------GKLEPRNRRRF--LPQRL 299 Query: 395 RASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTA--LNMIDYGLDNL 452 + A F G P ++ RI Y A + + DY + Sbjct: 300 SITALAESCSVAPLFHGMSANP---------NLRRLRPGRIRRAYAAGPVRVEDYKISPP 350 Query: 453 PGGPLMVEGFTYIPHRFAL---GFA----------EAPRGDDIHWSMTGDNQKLYRWRCR 499 P M E + H F L G+A EAP+G+ + ++ +++ YR + R Sbjct: 351 PRA-AMKENMEALIHHFLLFTKGYAVPPGETYSAIEAPKGEMGVFLVSDGSERPYRCKIR 409 Query: 500 AATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 A +A+ + RG+ ++DA IIG++D + DR Sbjct: 410 APGFAHLSCFDQISRGHLLADAVAIIGTMDLVFGEVDR 447 >UniRef50_Q056K8 Metal (Ni/Fe) hydrogenase, large subunit n=4 Tax=Leptospira RepID=Q056K8_LEPBL Length = 469 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 86/380 (22%), Positives = 157/380 (41%), Gaps = 47/380 (12%) Query: 184 IGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGI 243 +GP+H EPGHFR V GE I + D RL + RG+ L + + + + ++ + G Sbjct: 109 VGPIHAGVIEPGHFRFIVKGEEIRNLDIRLGFQKRGLIDLIKGKGSKDSFPY-AEAISGD 167 Query: 244 CGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQ 303 A++ A++ E A I VP+ R +LLE+ER+ +H+ ++G G+ Sbjct: 168 STIAYAIAFSRIFEEAQKIAVPQELDFARLVLLELERIATHIGDMGAIAGDVGYYPLQGV 227 Query: 304 FFRVRETSMKMAEILTGARKTYGLNLIGGI--RRDLLKDDMIQTRQLAQQMRREVQELVD 361 R + + E LTG R G G I R+ L ++ + +LA+++R ++V Sbjct: 228 CSLQRGVPLGVMEALTGNRFGRGALSPGKIVLRKGLNREKL---NELAERIRSVTADVVA 284 Query: 362 VLLSTPNME---QRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRA-DHPFVGYGLLPM 417 N+ +R G + + R +G + + +G +RD R+ + ++ + + Sbjct: 285 HFERAANVSTNRERLQSCGIIRQKQVRHLGFIGMVEKCTGLSRDLRSLEKSYMFSSPISL 344 Query: 418 EVHSEQ-GCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEA 476 E++ + D +R +R E+ + G +++ + F+L F + Sbjct: 345 ELNRDHMKGDAWARFYLRCEELKNS-------------GKWLIDAIPKLEAAFSLKFGKV 391 Query: 477 PRGDDIH----------W----------SMTGDNQKLYRWRCRAATYANWPTLRYMLRGN 516 P + W TG + Y R + NW L +RG Sbjct: 392 PSKSSVKKGTYYSAVEGWRGPVLVSLDLDATGSIENAY---IREVSVPNWHALELAVRGE 448 Query: 517 TVSDAPLIIGSLDPCYSCTD 536 + D PL S + Y D Sbjct: 449 YIGDFPLNNKSFNLSYVGVD 468 >UniRef50_UPI000038DF6E Ni,Fe-hydrogenase III large subunit n=1 Tax=Ferroplasma acidarmanus fer1 RepID=UPI000038DF6E Length = 384 Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 92/337 (27%), Positives = 145/337 (43%), Gaps = 28/337 (8%) Query: 185 GPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGIC 244 GP E +F L GE I D Y R ++ L + + +R+ G Sbjct: 50 GPSAGGLRESVNFSLLTPGETIRDVIIHPEYKKRDLKILGDP---VSRALLKVERINGFH 106 Query: 245 GFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQF 304 ++S Y +VE A+GI+ E M R + LE+ER+ S++ + C GF Q Sbjct: 107 AASNSIGYILAVEEALGIENSELNDM-RIVELELERIRSNIDVIKGMCESAGFAVPEKQL 165 Query: 305 FRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLL 364 +RE ++ G R + +N G + D I+ + +Q R ++ D LL Sbjct: 166 LYLREEVARIISRAFGHRYFFSVNGFGTVSGDF---STIKLNAIEKQFR----DIYDGLL 218 Query: 365 STPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGY-GLLPMEVHSEQ 423 S+ R G I ++ ++ GP RA+G D R D + Y P+ +E Sbjct: 219 SSKIFLDRIQENG-----IVKNENSTGPAARAAGFKFDARKDSKSLDYRNFTPV---TES 270 Query: 424 GCDVISRLKVRINEVYTALNMID-YGLDNLPG-GPLMVEGFTYIPHRFALGFAEAPRGDD 481 G D SRL VR EV+ A+N+ID YG+ N+ + G R E+P G D Sbjct: 271 GADSFSRLVVRSEEVFEAINIIDSYGVKNIKTRTKNELTGSGKGSARI-----ESPAG-D 324 Query: 482 IHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTV 518 I + + +N KL + + +Y N R L+ N + Sbjct: 325 IFYYVNIENGKLNDIQMVSPSYLNLRLFREALKNNNI 361 >UniRef50_Q5DUX5 NADH-ubiquinone oxidoreductase 49 kDa subunit n=3 Tax=Nyctotherus ovalis RepID=NDUS2_NYCOV Length = 412 Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 88/388 (22%), Positives = 165/388 (42%), Gaps = 34/388 (8%) Query: 181 VVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 240 ++ GP H S + + GE + D + ++HRG E+L E N F+ DR+ Sbjct: 28 ILNFGPQHPASHGVLRLVIVIIGEVVTKLDPHIGFLHRGTERLVEEHSYMNAAVFM-DRL 86 Query: 241 CGICGFAHSTAYTTSVENAMG-IQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDS 299 + AY +VE A+ ++ R Q++R I E+ R+ +HLL+ +A H + Sbjct: 87 DYTTVLTQTHAYCLAVEQALAKSRLCIRTQLLRTIFDELSRILNHLLS--IATHALDIGT 144 Query: 300 GFMQF--FRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMI-QTRQLAQQMRREV 356 M F F RE M++ E ++GAR L +L ++++ + ++ + Sbjct: 145 MAMLFWAFEDRERIMELYEYISGARMHTALYYPNQTLDHILTNELLAKILIFSRNSEKTY 204 Query: 357 QELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRA--DHPFVGYGL 414 E+ L + R GIG + EI+ + GP+ R++G D R+ ++ + Y Sbjct: 205 TEIYIALYNNRVWRLRLCGIGVVSTEISTSTTISGPVARSTGLQLDMRSGENYQYGYYAS 264 Query: 415 LPMEVHSEQGCDVISRLKVRINEVYTA--------------LNMIDYGLDNLPGGP---- 456 L + + D R +R+ E++ + +N+ Y + + P Sbjct: 265 LTLRIFLGISGDSFDRFIIRLRELFESTRLIYNSLIELSAYINISVYNMCSYSNNPHLKI 324 Query: 457 -LMVEGFTYIPHRFAL------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTL 509 ++E F Y + L GF E+ +G + + YR R+ Y + L Sbjct: 325 ESLIELFRYSLGEYLLNISLVSGFVESGKGIFGIMLAANNTNRPYRLYIRSPAYMHLQLL 384 Query: 510 RYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + G+ ++D ++GS+D + DR Sbjct: 385 PKLGAGHHIADLATLLGSIDVVFGEVDR 412 >UniRef50_P15689 NADH-ubiquinone oxidoreductase 49 kDa subunit n=10 Tax=cellular organisms RepID=NDUS2_PARTE Length = 400 Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 89/398 (22%), Positives = 157/398 (39%), Gaps = 45/398 (11%) Query: 182 VPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 241 V GP H + L ++GE + D + +HRG EKL ET+ + + DR+ Sbjct: 6 VNFGPQHPAAHGVLRLILQLNGEVVEKMDIHIGLLHRGSEKLMETKPYLQSMPYF-DRLD 64 Query: 242 GICGFAHSTAYTTSVENAMGI-QVPERAQMIRAILLEVERLHSHLLNLGLACHF--TGFD 298 + AY ++E + ++R + E+ R+ +H+L +ACH G Sbjct: 65 YVSMMVQEHAYCLAIEALLNTTNYTANFVLVRTMFDELTRILNHML--AIACHALDIGSM 122 Query: 299 SGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQ-TRQLAQQMRREVQ 357 S F RE M+ E + G R + + L ++ + + Sbjct: 123 SSIFWAFEEREKIMEFYERVCGRRMHAAFYRPNEVNLNFLSVKLLTDILEFNNNCLTTLS 182 Query: 358 ELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRAD--HPFVGYGLL 415 E+ ++L +QR V IG + + DF G M R++G RD R D + Y L Sbjct: 183 EMHNILTYNKIWKQRLVNIGSISYKDCLDFGLTGVMARSTGIKRDLRMDAFDTYANYYYL 242 Query: 416 PMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNL--------PGGPL---------- 457 ++ Q D R +R+NE+ ++N+I + L P L Sbjct: 243 NFRSYTGQAGDSYDRFLIRMNEMSESINIISQAIFKLTTSKNTCSPASILKALNKKKFIS 302 Query: 458 ------------MVEGFTY------IPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCR 499 ++ F Y I + E+P+G+ ++ + K YR + R Sbjct: 303 QTYKNEYSSMEKLITHFKYWSEGFKIQSNWTYQAVESPKGEFGVTLVSDGSNKPYRCKVR 362 Query: 500 AATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + Y + L M +G+ ++D +IG++D + DR Sbjct: 363 SPAYHHLQVLPKMSKGHLLADLSALIGTIDIVFGEIDR 400 >UniRef50_Q6L0U1 Formate hydrogenlyase subunit 5 n=1 Tax=Picrophilus torridus RepID=Q6L0U1_PICTO Length = 381 Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 64/263 (24%), Positives = 121/263 (46%), Gaps = 19/263 (7%) Query: 185 GPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGIC 244 GPL EP F + GE I +Y +Y ++ + + + + +R+ G Sbjct: 49 GPLTGGIPEPFRFDINTSGEKI---NYIKYYNYK-IRNIKLKGINIKDAIPYIERINGNF 104 Query: 245 GFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQF 304 +++ + +SV +A+ I++P +M I +E+ER+ +HL L C GF+ Sbjct: 105 AASYTICFLSSVMDALEIEIPYELKMYYIIEMELERIRNHLYVLARMCEPAGFNVPANML 164 Query: 305 FRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLL 364 ++E ++ +I G R +G+N + R D+ K + + E+ ++ LL Sbjct: 165 MHIKERFSRIIDITFGHRYFFGVNQLKSKRLDIHK--------MINVYKNEINDIYLNLL 216 Query: 365 STPNMEQRTVGIGR-LDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQ 423 ++ R GR LD ++ GP RA+G+ D+R D Y E+ ++ Sbjct: 217 NSRLFTDRLQDNGRILDDDMT------GPAARAAGYKYDSRYDFDIFYYNDTGYEIKTDD 270 Query: 424 GCDVISRLKVRINEVYTALNMID 446 D +SR VR NE+ ++++I+ Sbjct: 271 SGDAMSRFNVRFNEILNSIDIIE 293 >UniRef50_D1Y9R2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit n=3 Tax=Propionibacterium acnes RepID=D1Y9R2_PROAC Length = 382 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 98/361 (27%), Positives = 145/361 (40%), Gaps = 18/361 (4%) Query: 177 KKNNVVPIGPLHVTSDEPGHFRLF--VDGENIIDADYRLFYVHRGMEKLAETRMGYNEVT 234 KK V + H+ PG + VD + I + + +HRG EKL E R GY ++ Sbjct: 22 KKYEVTWLDLGHLHPSRPGLVTITTTVDDDVITSSQVNVGNLHRGDEKLFEAR-GYRQIP 80 Query: 235 FLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNL---GLA 291 L+ R F T ++E+AMGI +P R IR +L E R+ SH L G Sbjct: 81 MLASRHDWTAPFIGETGAAHAIEDAMGITIPTRVAWIRTLLAEFSRITSHFTFLSWVGHH 140 Query: 292 CHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQ 351 C G ++ E + ++ + +G R + IGG+R + + L + Sbjct: 141 CDDAGLENAIATAI---ENARRIWQRCSGNRIHPMITRIGGLR---IHPESEWQPTLGEW 194 Query: 352 MRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVG 411 + + LV L + + G+ + + + GP+ RASG DTR Sbjct: 195 L-DDANALVTWLRTALDATVGVRGVAVIPTNMIDRYGLSGPVSRASGVDLDTRRRTAVYD 253 Query: 412 YGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPG--GPLMVEGFTYI--PH 467 P EV E D SRL N+ + ++ LD LP GPL T I P Sbjct: 254 ELKWP-EVVIEPRGDAYSRLATLCNDAAVSSSLCRQILDRLPNLDGPLETRLPTTIKAPR 312 Query: 468 RFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGS 527 EAP G + + + +R R T+AN L +L G V D I S Sbjct: 313 GRTWTTIEAPWGRAGYLLESRGSTTPWRMALRTPTFANVQVLEAVLPGTRVDDVEATIAS 372 Query: 528 L 528 L Sbjct: 373 L 373 >UniRef50_C7JEU8 NADH-ubiquinone oxidoreductase 49kDa subunit n=8 Tax=Acetobacter pasteurianus RepID=C7JEU8_ACEP3 Length = 498 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 106/443 (23%), Positives = 176/443 (39%), Gaps = 22/443 (4%) Query: 101 YPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPA 160 YP+++P + ER + D+YG + D R L+ D W Q+ Sbjct: 72 YPALSPARDISCLYERRIYDLYGAEGMWATDVRPLLDHDVWSSSTPLAEHPGAGGGQKG- 130 Query: 161 PTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGM 220 + E +++ GD + GP + P H L + I A+ Y HRGM Sbjct: 131 -LIHFQPAEHMHQEGDMADG---WGPATGGMEPPLHVALAMQEGRIRAAETVTGYAHRGM 186 Query: 221 E-KLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVE 279 E + +R+ + LS RV AH A+ +VE+A QV +++R LLE+E Sbjct: 187 ELRWRNSRV--EDACKLSARVASGQSVAHQVAFCLAVEDACKEQVGPEIRLLRVALLELE 244 Query: 280 RLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGG--IRRDL 337 R+ HL L G +RE ++ A +TG+R + + GG +R Sbjct: 245 RICHHLFLLADMARLAGARLVASGCMGLREKLIQEAAPITGSRLLMDVCVPGGLSLRHAT 304 Query: 338 LKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRAS 397 DM +L + R+ L+ + P + + GIG++ ++ GP RA+ Sbjct: 305 QMGDMCG--RLCEVAERDYPALLALWQEYPGLSMQLAGIGKVTADLLERVGLDGPTARAA 362 Query: 398 GHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNL---PG 454 G D R P GY + Q R + + EV +L M+D + G Sbjct: 363 GWDCDGRRMMP--GYEGIWRFTSGRQDGTAEDRAMLLLEEVGESLRMLDEVASRIGLTAG 420 Query: 455 GPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLR 514 G + + + G E P G ++W + ++ + R + A T +L Sbjct: 421 GSVQLS----MQDSEGTGMVEGPWGGILYWVRLKEG-RVEQVFARNPSSAALLTFEAILP 475 Query: 515 GNTVSDAPLIIGSLDPCYSCTDR 537 G+ D L+ SLD + D+ Sbjct: 476 GHQPDDVALLARSLDINAAALDQ 498 >UniRef50_B5ZIZ9 Ni Fe-hydrogenase III large subunit-like protein n=3 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=B5ZIZ9_GLUDA Length = 510 Score = 78.2 bits (191), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 114/440 (25%), Positives = 176/440 (40%), Gaps = 33/440 (7%) Query: 109 PAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTT-DAET 167 PAA ER V D++G + D R + W +PL RP P + + Sbjct: 91 PAASLPERCVHDLWGFEAMEARDTRPWLDHGVW-TATWPLGP-------RPGPVSWPPDP 142 Query: 168 YEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIID-ADYRLFYVHRG-MEKLAE 225 EF + G ++ IGP PGH RL + G + + A++RL Y HRG M +L Sbjct: 143 PEFRPQPG--GGTILGIGPADGGHHTPGHLRLALGGRDTVGGAEWRLGYAHRGVMARLCG 200 Query: 226 TRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHL 285 + L+ R AH +A ++E A V + R +L E+ER+ +HL Sbjct: 201 --LDAPAAVRLAGRAAAGASVAHQSALCRAIEAASDSMVGTGTERCRVLLAEIERVATHL 258 Query: 286 LNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQT 345 ++ G + + +RE+ M + + G R L G D Sbjct: 259 HDVARTARAAGATALAAECEYLRESVMDLCGRMFGHRLLMDLVRPEGPDGHAGAGDAEDG 318 Query: 346 RQLAQQMRREVQELVDVLLST-------PNMEQRTVGIGRLDPEIARDFSNVGPMVRASG 398 +A + R+V +LV + P +E R VG G L AR G RAS Sbjct: 319 AAIA-AVARQVADLVRGRMRVVGRCRDWPGLEARVVGRGVLGEHTARMLGVGGVAGRASA 377 Query: 399 HARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMID-YGLDNLPGGPL 457 D R P GY L ++ + DV +R+ +R+ E+ ++ +++ G D GPL Sbjct: 378 REEDLRRLVP--GYRLGWLDTGVRRAGDVAARIDLRLAEIGGSVRILESAGAD----GPL 431 Query: 458 MVEGFTYIPHRFALGFAEAPRGDDIHW-SMTGDNQKLYRWRCRAATYANWPTLRYMLRGN 516 G +G AE PRG +W M G + R A+ L ++L G Sbjct: 432 PGTGTPPRRDGEGVGCAEGPRGAVWYWVRMEGGAVRAA--HVRDPALAHVAALEHVLAGA 489 Query: 517 TVSDAPLIIGSLDPCYSCTD 536 D +I+ S + D Sbjct: 490 DADDVAMIVRSFGLSAAAAD 509 >UniRef50_Q978D6 Formate hydrogenlyase subunit 3 n=1 Tax=Thermoplasma volcanium RepID=Q978D6_THEVO Length = 389 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 70/295 (23%), Positives = 125/295 (42%), Gaps = 26/295 (8%) Query: 232 EVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLA 291 + L +R+ G +H+ A+ +VE+A+ I VPE Q R I+LE+ER+ S+L + Sbjct: 95 DALLLVERINGFHAASHAVAFEMAVEDALNIDVPEEVQYSRIIMLELERMRSNLEVVKRL 154 Query: 292 CHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQ 351 C GF Q +RE ++ G R + + +GG + + L + + Sbjct: 155 CEPAGFGVPQNQIAYLRENIARIITSFAGHRYFFSSSYVGGCQFNGL-----VLESVIED 209 Query: 352 MRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADH---P 408 ++ E + + + LL + R G++ +GP RA+G D R D P Sbjct: 210 VKEEFEGIFNDLLQSKIFLNRLQNNGKISSS-----DMLGPAARAAGIEVDARIDEKRLP 264 Query: 409 FVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGL---DNLPGGPLMVEGFTYI 465 + G P+ V E D R VR E+ ++ ++I + N P P +E Sbjct: 265 YSKLGFKPI-VFDEP--DAFGRFYVRSKEILSSADLISKAIRFSGNSP--PAKIEK---- 315 Query: 466 PHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSD 520 + E+P+GD ++ D K+ + + + N + + GN +D Sbjct: 316 TNGEGAARVESPQGDLFYYVKINDG-KISDVQISSPSLLNIEAFKKSMIGNIFTD 369 >UniRef50_B3QUS1 NADH-quinone oxidoreductase n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QUS1_CHLT3 Length = 177 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 50/141 (35%), Positives = 81/141 (57%), Gaps = 7/141 (4%) Query: 13 ALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSV-LFGNDERKLNGH 71 AL AFP +L+ + +++LT VK + E+ +FL + G L V + G D Sbjct: 8 ALQSAFPKALLETT-KFRNELTFRVKKENIREISQFLKEELGFNLCVDICGADRFNEEPR 66 Query: 72 YAVYY-VLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLP 130 + V Y ++++E T+ I ++V ++ KP PSV PAA W ERE DM+G++ V P Sbjct: 67 FEVIYNLMNLEHNTR--IRLKVWLEEAKPHLPSVISVWPAADWYERETYDMFGIVFVNHP 124 Query: 131 DERRLVLPDDWPDELYPLRKD 151 D RR+ +P+D+ E +P+RK+ Sbjct: 125 DMRRIYMPEDF--EYFPMRKE 143 >UniRef50_B5YL31 NADH-quinone oxidoreductase n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YL31_THEYD Length = 201 Score = 75.1 bits (183), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 80/151 (52%), Gaps = 7/151 (4%) Query: 2 SEEKLGQHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQG-GWLSVL 60 +EE L Y L E FP V++ + + Q++V VK N + E++++L +QG L L Sbjct: 32 TEESLKIAY--KLKEQFPEEVIEIK-EFRGQVSVIVKSNKIKEILKYLKNQQGFNHLQDL 88 Query: 61 FGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRD 120 G D + + Y L + I VR +V+ PE SVT A W ERE D Sbjct: 89 CGVDYSPEKPRFEIVYNL-YSIWRRLHIRVRAKVNEETPELDSVTDLWEGANWHERECFD 147 Query: 121 MYGLIPVGLPDERRLVLPDDWPDELYPLRKD 151 M+G+ +G PD RR+++P+DW YPLRKD Sbjct: 148 MFGIRFIGHPDLRRILMPEDWNG--YPLRKD 176 >UniRef50_D1LDT9 NADH dehydrogenase subunit 7 (Fragment) n=2 Tax=Euplotidae RepID=D1LDT9_EUPCR Length = 462 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 93/413 (22%), Positives = 159/413 (38%), Gaps = 60/413 (14%) Query: 171 INELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGY 230 +N+L + ++ GP H S F L ++GE I AD + ++HRG EKL E R Sbjct: 53 LNKLEQTQTFMMNFGPQHPASHGVLRFVLQLEGEYIRHADANIGFLHRGTEKLIEQRTYL 112 Query: 231 NEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQV-PERAQMIRAILLEVERLHSHLLNLG 289 + + DR+ + + AY ++EN +G +RA+ E+ RL +H LG Sbjct: 113 KSLPYF-DRLDYVSMMSQEHAYCLAIENLLGSSTFTSFFVQVRALFDELTRLMNHF--LG 169 Query: 290 LACHFTGFDSGFMQ----FFRVRETSMKMAEILTGAR---KTYGLNLI--GGIRRDLLKD 340 ++ H D G M F RE M+ E ++GAR Y N + G+ D Sbjct: 170 ISTH--SLDVGNMSPAFWAFEERERLMEFYERVSGARMHAAFYRPNDLDWTGLNYQFFID 227 Query: 341 DMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHA 400 + + + E+ +L + R V IG +D F+ G + R++G Sbjct: 228 LLF----FLNNTYKSITEMFVILATNNIWRSRLVRIGVVDNAQVPLFAASGVVSRSAGFK 283 Query: 401 RDTR--ADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNL------ 452 +D R + Y L + + D R +RI E+ ++ +I + NL Sbjct: 284 KDLRILKTSTYSYYWFLKLRSFLGKMGDCYDRFIIRIREMLESVFIIYQIISNLLVVFES 343 Query: 453 -PGGPLMVEGFTYIPHRFALG--------------------------------FAEAPRG 479 P +Y+ F EAP+G Sbjct: 344 TTALPFWYNTESYVSATFTKSQFNKKSTSMEALITHFKHYSEGIKVPAGLVYQSVEAPKG 403 Query: 480 DDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCY 532 + ++ + K +R + R Y + + +RG+ +D I+GS D + Sbjct: 404 EFGVSLISDGSSKPFRCKIRTPAYHHLQFMSSQIRGHFFADMITILGSQDIVF 456 >UniRef50_P19496 Coenzyme F420 hydrogenase subunit alpha n=2 Tax=Methanobacteriaceae RepID=FRHA_METTH Length = 405 Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 86/394 (21%), Positives = 159/394 (40%), Gaps = 53/394 (13%) Query: 190 TSDEPGHFRLF--VDGENIIDADYRLFYVH--RGMEKLAETRMGYNEVTFLSDRVCGICG 245 TS + GH L VD E I+ R F + RG+EK+ T + R+CG+C Sbjct: 10 TSRQEGHAELVMEVDDEGIV-TKGRYFSITPVRGLEKIV-TGKAPETAPVIVQRICGVCP 67 Query: 246 FAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLL-NLGLACHFTG---FDSGF 301 H+ A ++++++ I+VP+ +++R + L ++SH + + +A F Sbjct: 68 IPHTLASVEAIDDSLDIEVPKAGRLLRELTLAAHHVNSHAIHHFLIAPDFVPENLMADAI 127 Query: 302 MQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVD 361 +R+ + + +++ G IGG+ ++ + + +Q++ +V E V+ Sbjct: 128 NSVSEIRKNAQYVVDMVAGEGIHPSDVRIGGMADNITELARKRLYARLKQLKPKVDEHVE 187 Query: 362 VLL---------------STPNMEQRTVGIGRL-----------------DPEIARDFSN 389 +++ + P + + R DPEIA+ + Sbjct: 188 LMIGLIEDKGLPKGLGVHNQPTLASHQIYGDRTKFDLDRFTEVMPESWYDDPEIAKRACS 247 Query: 390 VGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGL 449 P+ RA ++ + E+G V+++ R E+ TAL L Sbjct: 248 TIPLYDGRNVEVGPRAR-------MVEFQGFKERG--VVAQHVARALEMKTALARAIEIL 298 Query: 450 DNL-PGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPT 508 D L P+ + + +G E PRG D+H + +N K+ + T N PT Sbjct: 299 DELDTSAPVRADFDERGTGKLGVGAIEGPRGLDVHMAQV-ENGKIQFYSALVPTTWNIPT 357 Query: 509 LRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVVD 542 + G P +I + DPC SC + VVD Sbjct: 358 MGPATEGFHHEYGPHVIRAYDPCLSCATHVMVVD 391 >UniRef50_Q1WLV6 Mitochondrial NADH:ubiquinone oxidoreductase 49kD subunit 7 (Fragment) n=1 Tax=Chlamydomonas incerta RepID=Q1WLV6_CHLIN Length = 277 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 55/198 (27%), Positives = 92/198 (46%), Gaps = 5/198 (2%) Query: 179 NNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSD 238 N + GP H + L + GE I+ AD + +HRG EKL E + + + D Sbjct: 83 NFTLNFGPQHPAAHGVLRLVLEMQGEIIMRADPHIGLLHRGTEKLLEYKTYLQGLPYF-D 141 Query: 239 RVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHF--TG 296 R+ + +Y ++E + + VP R Q IR + E+ R+ +HL L + CH G Sbjct: 142 RLDYVSMMCMEHSYVLAIEQLLNLSVPLRGQYIRVLFSEITRVLNHL--LAITCHSMDVG 199 Query: 297 FDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREV 356 + F+ F RE + E ++GAR G +GG+ +DL + A+Q + Sbjct: 200 ALTPFLWAFEEREKLFEFYERVSGARMHAGYFRVGGVSQDLPIGLLRDVYDWARQFGLRL 259 Query: 357 QELVDVLLSTPNMEQRTV 374 E+ ++L ++RTV Sbjct: 260 DEMEELLTGNRIWKERTV 277 >UniRef50_UPI0001693946 NADH dehydrogenase subunit C n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693946 Length = 249 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/154 (35%), Positives = 81/154 (52%), Gaps = 23/154 (14%) Query: 1 MSEEKLGQHYLAALNEAFPGVVL--DHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLS 58 + EE + + Y+ LN P VV+ +H +Q +++ EF +LS Sbjct: 108 VHEEVIQEAYINELNGHLPCVVIHPEHWYQAAEEIHAHE---------EFA----CNYLS 154 Query: 59 VLFGNDERKLNGHYA-VYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGERE 117 L G D++ H VY++ S+ G + V+V+ D ++P PSVTP P A W ERE Sbjct: 155 NLTGIDQK---SHLEMVYHLRSIPSGRE--YMVKVKTDRDRPSIPSVTPIWPTANWNERE 209 Query: 118 VRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKD 151 V D+ G+ G PD RR+++PDDW +PLRKD Sbjct: 210 VYDLLGVDFPGHPDLRRIMMPDDWVG--HPLRKD 241 >UniRef50_Q1PWG9 NADH-quinone oxidoreductase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PWG9_9BACT Length = 166 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 84/152 (55%), Gaps = 10/152 (6%) Query: 11 LAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQ---GGWLSVLFGNDERK 67 + + FP + D + + +LT +K ++ +V EF + +LS + G D+ + Sbjct: 7 ITLVKSHFPEAITD-CYDFRGELTFVIKKEHIMQVAEFFKKNEELECDYLSDVCGVDKIE 65 Query: 68 LNGHY-AVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIP 126 NG + VY++ SM+K + + ++V V ++ P +VT A W ERE DM+G+ Sbjct: 66 TNGVFEVVYHLYSMQKKHR--VRLKVPVPSDNPTISTVTHIWKTANWHERETYDMFGIQF 123 Query: 127 VGLPDERRLVLPDDWPDELYPLRKD-SMDYRQ 157 G PD R++++P+D+ E +PLRKD +D RQ Sbjct: 124 QGHPDLRKILMPEDF--EGHPLRKDYPIDGRQ 153 >UniRef50_Q2S5J1 NADH-quinone oxidoreductase n=3 Tax=Rhodothermaceae RepID=Q2S5J1_SALRD Length = 234 Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 50/143 (34%), Positives = 78/143 (54%), Gaps = 7/143 (4%) Query: 11 LAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQG-GWLSVLFGNDERKLN 69 + AL E F VLD + ++ T+ V+ N + EV FL ++G + L G D Sbjct: 49 IDALREEFGAAVLD-VERYANEDTIYVEKNRIREVCRFLKEEEGFDYFVDLGGIDNFTAE 107 Query: 70 GHYAVYY-VLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVG 128 Y V+Y ++S E+ + + ++V+VD + PSVT AA W ERE DM+G V Sbjct: 108 DRYEVFYNLVSTERQKR--LRLKVQVDEGDMQVPSVTEVYRAANWNEREAYDMFGFSFVD 165 Query: 129 LPDERRLVLPDDWPDELYPLRKD 151 PD RR+ +P+D+ + +PLRK+ Sbjct: 166 HPDPRRMYMPEDF--DYHPLRKE 186 >UniRef50_P80489 Coenzyme F420 hydrogenase subunit alpha n=11 Tax=Methanomicrobia RepID=FRHA_METBF Length = 456 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 66/253 (26%), Positives = 113/253 (44%), Gaps = 27/253 (10%) Query: 179 NNVVPIGPLHVTSDEPGHFRLF--VDGENIID-ADYRLFYVHRGMEKLAETRMGYNEVTF 235 VV I P T+ GH +L VD + I++ D+ RG+EKLA + +V Sbjct: 2 TKVVEISP---TTRLEGHSKLTLKVDDQGIVERGDWLSITPVRGIEKLAIGKT-MEQVPK 57 Query: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLAC--- 292 ++ RVCGIC AH+ A T ++E ++G ++P A+++R IL R+HS L+ L Sbjct: 58 IASRVCGICPIAHTLASTEAMEASIGCEIPTDAKLLRTILHAANRIHSIALHNILILPDF 117 Query: 293 HFTGFDSGFMQF-------------FRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLK 339 + G + F F R+RE + + I G IGG+ ++ Sbjct: 118 YIPGTEKKFNLFANEQPARSVMARIVRIREIAQTIGAIAGGEAIHPSNPRIGGMYYNVSP 177 Query: 340 DDMIQTRQLAQQ----MRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVR 395 + LA++ + +++ + DV+ + N E V ++ + N G M Sbjct: 178 RAKQKMADLAKEGLVLVHEQMEFMFDVIRNMQNREFVEVAGKQIPLPKKLGYHNQGVMAT 237 Query: 396 ASGHARDTRADHP 408 AS + + D+P Sbjct: 238 ASMYGSSSLDDNP 250 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 3/79 (3%) Query: 470 ALGFA--EAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGS 527 ++G+A EAPRG +IH + D + L+ + T N+PT L G A +++ + Sbjct: 370 SMGWAANEAPRGSNIHLARVKDGKVLW-YDMLVPTTWNFPTCSRALTGAPWQIAEMVVRA 428 Query: 528 LDPCYSCTDRMTVVDVRKK 546 DPC SC M VV+ +K Sbjct: 429 YDPCVSCATHMIVVNEEEK 447 >UniRef50_B6YTV8 Coenzyme F420 hydrogenase alpha subunit n=1 Tax=Thermococcus onnurineus NA1 RepID=B6YTV8_THEON Length = 392 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 85/357 (23%), Positives = 151/357 (42%), Gaps = 50/357 (14%) Query: 218 RGMEKLAETRMGYNEVTFLSD--RVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAIL 275 RG EKL +G N + + R+CG+C +H A + ++ENA+GI P ++R L Sbjct: 39 RGFEKLV---VGKNPLFAVEAVMRICGLCHASHGIAMSEAIENAIGIIPPRNGILMREAL 95 Query: 276 LEVERLHSHLLN-LGLACHFTGFDSGFMQFFRVRETSMKMAEIL--TGARKTYGLNL-IG 331 V R+ SH+L L +A + F++ + K+++ L G T+ NL +G Sbjct: 96 GLVNRIQSHMLEFLMVAGDLLIEEKREEVLFQLMDFHAKISDYLLKMGGAATHPPNLTVG 155 Query: 332 GIRR-------------------------DLLKDDMIQTRQLAQQMRREVQELVDVLLST 366 G+ LL D+ IQT ++A ++R + E ++ S Sbjct: 156 GMFSVPKWSVFNNLKARLPKLTGQWEEIAHLLTDEDIQT-EVADELREKKAENNYLVSSL 214 Query: 367 PNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLP------MEVH 420 ++ + R++ ++ P H++++ F G + M+V+ Sbjct: 215 FYGDRFNINAERIETMPYYEYRKDNP------HSKESTTLIAFYGGEKVEAGPRARMKVY 268 Query: 421 SEQGCDVISRL-KVRINEVYTALNMIDYGLDNLP-GGPLMVEGFTYIPHRFALGFAEAPR 478 E + L R+ + AL ++ LD++ P + + P + +G EAPR Sbjct: 269 REFTDSSLYGLHTARVQDTTLALIRLEEILDSIKMDEPFRTKNIVFGPGK-GVGVYEAPR 327 Query: 479 GDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCT 535 G IH GD ++ + T N P + M +G +V A ++ DPC CT Sbjct: 328 GTLIHLIELGDEGRVVSSKIIVPTMFNIPVMEEMAKGLSVKAAEAVMRLYDPCIPCT 384 >UniRef50_Q2FTW5 Membrane bound hydrogenase subunit mbhK n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FTW5_METHJ Length = 210 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 30/70 (42%), Positives = 46/70 (65%) Query: 82 KGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDW 141 K + + V+V + P P+++ +P AV+ ERE +DM G+ G+PD RR+ LPDD+ Sbjct: 91 KHEEICVVFTVQVPKSDPHVPTISGLIPGAVYSEREKQDMIGVTVDGIPDSRRIFLPDDF 150 Query: 142 PDELYPLRKD 151 P+E+YP RKD Sbjct: 151 PEEIYPWRKD 160 >UniRef50_Q5FU77 Putative uncharacterized protein n=1 Tax=Gluconobacter oxydans RepID=Q5FU77_GLUOX Length = 479 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 111/472 (23%), Positives = 173/472 (36%), Gaps = 64/472 (13%) Query: 73 AVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDE 132 A YVL +E + VE + Y + + R A WGER D+YG+ Sbjct: 47 ARAYVLLLEGDRPLLASRAVE----ERRYLAPSSRFAGAEWGERVAYDLYGV-------- 94 Query: 133 RRLVLPDDWPDELYPLRKDSMDYRQRPAPTTD----AETYEFINELGDKKNNVVPIGPLH 188 ++MD R AP D T+ + G + P+ H Sbjct: 95 ------------------EAMDARGNGAPALDEGGWTSTWPLSSRPGPAAGGLRPLAGSH 136 Query: 189 VTSDE------PGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCG 242 + E P V + + HRG+ R + +S G Sbjct: 137 LLRPEQTGLSGPLELSFEVLKGKVRSVEVCAGGAHRGVVSRLLGRTPEEAMPLVSRMTAG 196 Query: 243 ICGF-AHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGF 301 GF AH A+ +V A G+ + + +LLE+ER+ HL + +A G D+ Sbjct: 197 --GFVAHPLAFARAVAQARGLVPGPGIRDVWMVLLEIERMSLHLFD--MARTARGVDAEL 252 Query: 302 MQFF--RVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMR-REVQE 358 + RE + +R+ + G R L + Q A Q R ++E Sbjct: 253 LATHCDHAREAIARACAEQGVSRRLMDMVACDGFRDGLEIVPLAQAVHAAMQPRLAALEE 312 Query: 359 LVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPME 418 L V P ++ G LD +A F+ G RASG + D R G L + Sbjct: 313 LHRVF--APRLD----GFAVLDVRLAERFAVGGVTGRASGRSMDMRRRE--AGMRLEALR 364 Query: 419 VHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRF--ALGFAEA 476 D +R +R+ E+ +L +++ L G + +E P R +G AE Sbjct: 365 ATGSSQGDARAREGLRLAEIRDSLKLLERIL-----GSIGLEDDEPAPDRTDEGIGVAEG 419 Query: 477 PRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSL 528 RGD +W + ++ R + P L MLRG VS P +GS+ Sbjct: 420 ARGDVWYWVRLKEG-RIESLHVRDPGVSLLPVLGAMLRGYPVSRVPAALGSI 470 >UniRef50_A1ALK5 NADH dehydrogenase (Ubiquinone), 30 kDa subunit n=2 Tax=Pelobacter propionicus DSM 2379 RepID=A1ALK5_PELPD Length = 159 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/151 (32%), Positives = 78/151 (51%), Gaps = 10/151 (6%) Query: 2 SEEKLGQHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQG-GWLSVL 60 EEK+ Q ++ FP + ++ V V EV++++ + G L ++ Sbjct: 3 GEEKVQQQFV----NRFPELSGSIRIVRSRRIFVDVPDQRFLEVLDYVRGELGFPILCLI 58 Query: 61 FGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRD 120 G DE + ++ V Y+L+ GT +T R+ D +P S+ R+P + ERE+ D Sbjct: 59 VGLDEGE---NFGVIYILASGDGTLASLTRRIPRD--EPVICSIYDRMPNSEIYERELVD 113 Query: 121 MYGLIPVGLPDERRLVLPDDWPDELYPLRKD 151 M+G+ GLPD R LPDDWP+ +PLRKD Sbjct: 114 MFGIHVTGLPDGSRYPLPDDWPEGQFPLRKD 144 >UniRef50_C5A2R8 Coenzyme F420 hydrogenase subunit alpha (FrhA) n=1 Tax=Thermococcus gammatolerans EJ3 RepID=C5A2R8_THEGJ Length = 393 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 89/370 (24%), Positives = 149/370 (40%), Gaps = 77/370 (20%) Query: 218 RGMEKLAETRMGYNEVTFLSD--RVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAIL 275 RG EK+ +G N + + R+CG+C +H A + ++E+A+G+ P +++R L Sbjct: 42 RGFEKMV---VGKNPLFAVEAVMRICGLCHASHGIAASEAIEHAIGVTPPRNGRLMREAL 98 Query: 276 LEVERLHSH-LLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILT--GARKTYGLNL-IG 331 + R SH LL L +A + F++ + K+++ L G T+ NL IG Sbjct: 99 GLINRAQSHALLFLMVAGDLIKEEKRNDVLFKLMDFHAKISDYLLKLGGAATHPPNLTIG 158 Query: 332 GI-------------------------RRDLLKDDMIQTRQLAQQMR---REVQELV--- 360 G+ +LL D+ IQT ++A ++R R + L Sbjct: 159 GMLSVPKWSVFNNLKARFKDLTASWEAAEELLIDEDIQT-EIADELREAKRPFKYLASGF 217 Query: 361 ----------DVLLSTPNMEQRTVGIGRLDPEIARDFSN----VGPMVRASGHARDTRAD 406 D + S P E R R + + GP R + R+ R D Sbjct: 218 FYGDRYNIEWDKVSSVPYYEFRKEEAARESTTLVSFYDGEKVETGPRARMITY-REFR-D 275 Query: 407 HPFVGYGLLPMEVHSEQGCDVISRLKV-RINEVYTALNMIDYGLDNLPGGPLMVEGFTYI 465 G L +E +RL + R+ E+ + + + P T+ Sbjct: 276 ESLYGLHLARIE---------DTRLAIQRLGEILDEIRIEE---------PFRTGDITFR 317 Query: 466 PHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLII 525 P + +G EAPRG IH+ G+ ++ + R T N P + M +G +V A ++ Sbjct: 318 PGK-GVGVYEAPRGTLIHYVELGEEGRVLKSRIVVPTMFNIPVMEEMAKGLSVKAAEAVM 376 Query: 526 GSLDPCYSCT 535 DPC CT Sbjct: 377 RLYDPCIPCT 386 >UniRef50_P31883 Quinone-reactive Ni/Fe-hydrogenase large chain n=39 Tax=root RepID=MBHL_WOLSU Length = 576 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 58/106 (54%), Gaps = 6/106 (5%) Query: 195 GHFRL--FVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAY 252 GH R+ VD N+I + + RG+E + + R + F + R+CG+C ++H A Sbjct: 15 GHLRIEVVVDENNVIQDAFSTATLWRGLETILKGR-DPRDAGFFTQRICGVCTYSHYKAG 73 Query: 253 TTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFD 298 ++VENA+GI+ P A++IR+++ LH H ++ H G D Sbjct: 74 ISAVENALGIKPPLNAELIRSLMSISLILHDHTVHF---YHLHGLD 116 >UniRef50_C1TPN9 Ni,Fe-hydrogenase III component G n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TPN9_9BACT Length = 186 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 67/127 (52%), Gaps = 7/127 (5%) Query: 29 TKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVLFGNDERKLNGHYAVYYVLSM----EKGT 84 T L +T+ + L + V+ L V+ G+DE H ++YY + E+G Sbjct: 50 TSHHLWMTIGKSRLLDFVDELGKFDFPNFHVVSGDDE---GDHISLYYHFDLYRAVERGV 106 Query: 85 KCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDE 144 +TV V V + S+ R+P + ERE+++M+G+ +GLP++ + LPDDW E Sbjct: 107 SLHVTVCVHVPKDDLTVDSLFSRIPGVEYSEREIQEMFGVDHIGLPNKALVFLPDDWNRE 166 Query: 145 LYPLRKD 151 ++P R+D Sbjct: 167 VFPWRRD 173 >UniRef50_A5UMA1 Coenzyme F420-reducing hydrogenase, alpha subunit, FrhA n=3 Tax=Methanobrevibacter RepID=A5UMA1_METS3 Length = 405 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 89/406 (21%), Positives = 154/406 (37%), Gaps = 69/406 (16%) Query: 190 TSDEPGHFRLF--VDGENII-DADYRLFYVHRGMEKLAETRMGYNEVT--FLSDRVCGIC 244 TS + GH L VD E I+ Y RG+EK+ G N T L R+CG+C Sbjct: 10 TSRQEGHAELVMEVDDEGIVTKGRYLSITPVRGLEKMV---AGKNPETAPVLCQRICGVC 66 Query: 245 GFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHF---------T 295 H+ A ++++++ I+VP+ +++R L +H +N HF Sbjct: 67 PIPHTLASVEAIDHSLDIEVPKAGKLLRQATLA-----AHGVNSAAIHHFLIAPDFVPEE 121 Query: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDL---LKDDMI-QTRQLAQQ 351 F + VR+ + ++L G +GG+ R++ KD +I + + Sbjct: 122 DFTTAVKSVSAVRKNVQYVVDMLAGEGIHPSDIRVGGMARNITSATKDKLIDRLKAFKPD 181 Query: 352 MRREVQELVDVLLSTPNMEQ-----------RTVGIGRL------------------DPE 382 M + V EL+ ++ + + + G L DPE Sbjct: 182 MEKHV-ELMKSFIAARELPEGLGVVDAPLLASSASYGNLDEFDYDNFSEVLPEAWYDDPE 240 Query: 383 IARDFSNVGPMVRASGHARDTRAD-HPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTA 441 I + P++ RA F G+ ++G V+++ R E+ Sbjct: 241 IGKKACTTIPLINGKNVETGPRARMDKFNGF--------KDKG--VVAQHVARAEEMLNN 290 Query: 442 LNMIDYGLDNL-PGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRA 500 N+ L+ + P + + +G E PRG ++H + D+ K+ + Sbjct: 291 YNLTIDLLEQIDTSAPARADYDDRGTGKLGIGVIEGPRGTNVHMANVKDS-KIQFYSAIV 349 Query: 501 ATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVVDVRKK 546 T N PT+ G +I + DPC SC + VVD K Sbjct: 350 PTTWNIPTMGPATEGFHHKYGADVIRAYDPCLSCATHVMVVDDEDK 395 >UniRef50_Q00404 F420-non-reducing hydrogenase vhc subunit A n=10 Tax=Euryarchaeota RepID=VHCA_METVO Length = 474 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 87/186 (46%), Gaps = 18/186 (9%) Query: 218 RGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLE 277 RG EK E R + + R+CGIC +H A +V+N G+++PE A M+R ++ + Sbjct: 39 RGFEKFLEGRY-IEDAPIFTPRICGICQVSHHLASAKAVDNVFGVKIPETANMLRNLIHQ 97 Query: 278 VERLHSHLLNLGLACH----FTGFDSGFMQ-FFRVRETSMKMAEILTGARKTYG--LNLI 330 +HSH L+ G+ F D + V +M M + RK + + Sbjct: 98 ASNVHSHALHFGMLASPDLMFPTTDDALKRNLLGVAGENMDMIKDSIAMRKVGQTIVQKV 157 Query: 331 GGIRRDLLKDDMI---QTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGR--LDPEIAR 385 GG R + I Q++ L ++ R E+ L D L+ T +RT+ +G+ ++ + Sbjct: 158 GG--RAIHPVTAIVGGQSKPLTEEERDELLTLSDNLVETA---ERTLNVGKEMVENLKEK 212 Query: 386 DFSNVG 391 D N+G Sbjct: 213 DLMNLG 218 >UniRef50_B8IZ17 Nickel-dependent hydrogenase large subunit n=17 Tax=Bacteria RepID=B8IZ17_DESDA Length = 604 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 58/106 (54%), Gaps = 6/106 (5%) Query: 195 GHFR--LFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAY 252 GH R + ++ +N+I + RG+E + + R + F ++R+CG+C H+ A Sbjct: 29 GHLRCEVNINDDNVITNAVSCGTIFRGIEIILKGRDPRDAWAF-TERICGVCTGTHALAS 87 Query: 253 TTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFD 298 +VENA+GI +P+ A +IR ++ H HL++L H TG D Sbjct: 88 VHAVENALGIDIPDNANIIRNLMQLCLMYHDHLVHL---YHLTGLD 130 >UniRef50_A9VS96 NADH (Or F420H2) dehydrogenase, subunit C n=15 Tax=cellular organisms RepID=A9VS96_BACWK Length = 485 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 44/126 (34%), Positives = 65/126 (51%), Gaps = 9/126 (7%) Query: 29 TKDQLTVTVKVNYLPEVVEFLYYKQG---GWLSVLFGNDERKLNGHYAVYYVLSMEKGTK 85 +KD T+ + + EV+E + +G ++S L D H VY L G K Sbjct: 358 SKDVPTLVAEPSKYYEVMELMRLHEGLAFDYMSELHATD---FVTHMEVYVHL-FSYGKK 413 Query: 86 CWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDEL 145 + V+V++D P+ SVTP A W ERE D+ G++ G P+ R+++PDDW Sbjct: 414 QSVAVKVKLDREAPQVKSVTPLWKGADWPERETYDLLGIVFEGHPNLSRILMPDDWVG-- 471 Query: 146 YPLRKD 151 YPLRKD Sbjct: 472 YPLRKD 477 >UniRef50_B5IS23 Respiratory-chain NADH dehydrogenase, 30 Kd subunit domain protein n=1 Tax=Thermococcus barophilus MP RepID=B5IS23_9EURY Length = 172 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 4/154 (2%) Query: 1 MSEEKLGQHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLY-YKQGGWLSV 59 M+ E+ + A E + + + ++ + V E+V FL S+ Sbjct: 1 MTPEEFAERIKAKFEEISIRITENKLPHPRKRVWIEVDRERFKELVRFLKEVNPTAQFSI 60 Query: 60 LFGNDE-RKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREV 118 + D +L Y ++ + E+G + V N P P++T P+++ EREV Sbjct: 61 IIAEDRGDRLTAKY--HWEMFWEQGESLSVIVGTSCPKNDPVLPTITDIFPSSLPYEREV 118 Query: 119 RDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDS 152 ++ G+ G+PD RRL LPDD+P+ +YPLR D Sbjct: 119 QEFLGIKYEGIPDPRRLFLPDDFPEGIYPLRLDE 152 >UniRef50_A8M620 NADH-quinone oxidoreductase subunit C n=14 Tax=Actinomycetales RepID=NUOC_SALAI Length = 245 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 49/149 (32%), Positives = 75/149 (50%), Gaps = 17/149 (11%) Query: 13 ALNEAFP--GVVLDHAWQTKDQLTVTVKVNYLPEVVEFLY------YKQGGWLSVL--FG 62 AL EA+P G ++ + +LT+ ++ + EV + L ++ +S + G Sbjct: 79 ALEEAYPAFGEAIEKVVVDRGELTLHIRPERIAEVCQVLRDDLALRFELCSSVSGVDYLG 138 Query: 63 NDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMY 122 D R+L +AVY + SM + I + V P PSVT P A W ERE DM+ Sbjct: 139 ADARRL---HAVYQLTSMT--YRRQIRLEAAVSVEDPHLPSVTGVYPTADWQEREAYDMF 193 Query: 123 GLIPVGLPDERRLVLPDDWPDELYPLRKD 151 G++ G P R+++PDDW E +P RKD Sbjct: 194 GIVFDGHPGLTRILMPDDW--EGHPQRKD 220 >UniRef50_Q7G6A6 NAD, putative n=3 Tax=Magnoliophyta RepID=Q7G6A6_ORYSJ Length = 352 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 57/230 (24%), Positives = 97/230 (42%), Gaps = 30/230 (13%) Query: 336 DLLKDDMIQTRQLAQQMRREVQELVDVLLS---TPNMEQRTVGIGRLDPEIARDFSNVGP 392 +L K D R L + + + Q L+ L P +R G+G + E A ++ GP Sbjct: 123 ELHKKDFSSERGLRRLLGKR-QRLLAYLAKKNRNPIFLERVEGVGFISGEEAVNWGLSGP 181 Query: 393 MVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNL 452 M+RASG D R + Y +V ++ D ++R VRI E+ ++ +I ++ + Sbjct: 182 MLRASGIQWDLRKVDLYESYNQFDWKVQWQKEGDSLARYLVRIGEMRESIKIIQQAVEKI 241 Query: 453 PGGP---LMVEGFTY--------IPHRF---------------ALGFAEAPRGDDIHWSM 486 PGGP L V F +RF EAP+G+ + + Sbjct: 242 PGGPYENLEVRCFKKAKNSEWNDFEYRFLGKKPSPNFELSKQELYARVEAPKGELGIYLV 301 Query: 487 TGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 D+ +RW+ R + N L +++ ++D I+GS+D D Sbjct: 302 GDDSLFPWRWKIRPPGFINLQILPQLVKKMKLADIMTILGSIDIIMGEVD 351 >UniRef50_A6DBU3 Nickel-dependent hydrogenase, large subunit n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DBU3_9PROT Length = 386 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 82/158 (51%), Gaps = 3/158 (1%) Query: 206 IIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVP 265 IID F+ +RG+E+ R + + ++ R+CGICG AH A ++ENA+ +++ Sbjct: 25 IIDFVEIFFWQYRGIEQYLVNR-HFLDALVINPRICGICGHAHLLATAKAIENALNLKIT 83 Query: 266 ERAQMIRAILLEVERLHSHLLNLGLACHFTGF-DSGFMQFFRVRETSMKMAEILTGARKT 324 ++A+++R I +E + +H+ L + T D ++ + + G + Sbjct: 84 KKAEILRDITSGLEIIQNHIKWFYLTLYPTQIKDKSYILKALNIVKKISKIIAIIGGQFP 143 Query: 325 YGLNLI-GGIRRDLLKDDMIQTRQLAQQMRREVQELVD 361 + +I GG+ DL D+I+ + L +++R ++ ++D Sbjct: 144 HNSYIIPGGVTCDLTNLDIIKIKNLLKKLREDIYTIID 181 >UniRef50_P21852 Periplasmic [NiFe] hydrogenase large subunit n=13 Tax=Bacteria RepID=PHNL_DESVM Length = 567 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 54/95 (56%), Gaps = 2/95 (2%) Query: 195 GHFRLFVDGEN-IIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYT 253 GH R+ V+ EN + Y + RG+E + + R + F + R CG+C + H+ A T Sbjct: 35 GHLRIEVEVENGKVKNAYSSSTLFRGLEIILKGRDPRDAQHF-TQRTCGVCTYTHALAST 93 Query: 254 TSVENAMGIQVPERAQMIRAILLEVERLHSHLLNL 288 V+NA+G+ +P+ A IR ++L + LH H+++ Sbjct: 94 RCVDNAVGVHIPKNATYIRNLVLGAQYLHDHIVHF 128 >UniRef50_A9G9T0 NADH-quinone oxidoreductase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G9T0_SORC5 Length = 182 Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 42/113 (37%), Positives = 58/113 (51%), Gaps = 11/113 (9%) Query: 56 WLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGE 115 +L + G D L VY++ S K + + ++V +D P ++ AA W E Sbjct: 58 YLECITGVDYPDLKKIVVVYHIYSYAKKHR--VVLKVFLDRESPAVSTLVDVWSAANWQE 115 Query: 116 REVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKD---SMDYR----QRPAP 161 RE D+ G+ G PD RRL+LPDDW E +PLRKD +YR QRP P Sbjct: 116 RECFDLLGVRFEGHPDLRRLLLPDDW--EGHPLRKDWQEKAEYRGIPTQRPNP 166 >UniRef50_B4UIA3 NADH-quinone oxidoreductase n=4 Tax=Anaeromyxobacter RepID=B4UIA3_ANASK Length = 196 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/119 (39%), Positives = 60/119 (50%), Gaps = 7/119 (5%) Query: 36 TVKVNYLPEVVEFLYYKQG---GWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWITVRV 92 VK + EV FL + G +L L D K N VY++LS I ++V Sbjct: 31 VVKAERIVEVSRFLATEPGLEMDFLEDLTAVDWPKRNVIEVVYHLLSYRHRHS--IVLKV 88 Query: 93 EVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKD 151 E D P P+V A W EREV D++G+ G PD RRL+LPDDW +PLRKD Sbjct: 89 EADRAAPVVPTVEGVWKTANWFEREVYDLFGVSFPGHPDLRRLMLPDDWVG--HPLRKD 145 >UniRef50_A1SE29 NADH-quinone oxidoreductase subunit C n=166 Tax=Bacteria RepID=NUOC_NOCSJ Length = 250 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/80 (42%), Positives = 46/80 (57%), Gaps = 4/80 (5%) Query: 72 YAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPD 131 +AVY++LSM + I + V V P PS+ P P W ERE DM+G+I G P Sbjct: 150 HAVYHLLSMTHNRR--IRLEVAVPDADPHIPSIVPVYPTNDWHERETYDMFGIIFDGHPA 207 Query: 132 ERRLVLPDDWPDELYPLRKD 151 R+++PDDWP +P RKD Sbjct: 208 LTRILMPDDWPG--HPQRKD 225 >UniRef50_P0ACD8 Hydrogenase-1 large chain n=159 Tax=Bacteria RepID=MBHL_ECOLI Length = 597 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 55/96 (57%), Gaps = 3/96 (3%) Query: 195 GHFR--LFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAY 252 GH R + ++ +N+I + RG+E + + R + F+ +R+CG+C H+ A Sbjct: 29 GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFV-ERICGVCTGVHALAS 87 Query: 253 TTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNL 288 ++E+A+GI+VP+ A +IR I+L H HL++ Sbjct: 88 VYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHF 123 >UniRef50_A2SS22 NADH dehydrogenase (Ubiquinone), 30 kDa subunit n=1 Tax=Methanocorpusculum labreanum Z RepID=A2SS22_METLZ Length = 193 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 4/121 (3%) Query: 35 VTVKVNYLPEVVEFLYYKQGGWLSVLFGNDERKLNGHYAVYYVLSMEKG---TKCWITVR 91 +T++ + VE L + LS + G D+ + + V Y+ S+ G T+C + Sbjct: 44 ITIQKEAIHFAVEELMKIRYPHLSCISGYDKGAKDPNLRVQYIFSLYGGIENTECMVIFS 103 Query: 92 VEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDER-RLVLPDDWPDELYPLRK 150 ++ P P++T + A + E+E R+ G+I GLP+ + + LP D+P +YPLRK Sbjct: 104 TDIPKADPHIPTITDLMEGAAFTEQEKREYLGIIVDGLPEAKHKFFLPQDFPSNIYPLRK 163 Query: 151 D 151 D Sbjct: 164 D 164 >UniRef50_Q00390 Coenzyme F420 hydrogenase subunit alpha n=9 Tax=Euryarchaeota RepID=FRHA_METVO Length = 398 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 83/396 (20%), Positives = 157/396 (39%), Gaps = 53/396 (13%) Query: 190 TSDEPGHFRLF--VDGENIID-ADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGF 246 T+ GH +L VD + I++ +Y RG EK + +S R CGIC Sbjct: 10 TTRHEGHTKLVLKVDDDGIVEKGNYLSVTPVRGFEKFLVGKPAEFAPIAVS-RFCGICPI 68 Query: 247 AHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLN-LGLACHFTGFDSGFMQFF 305 AH+T+ ++E+A GI P+ ++R + ++HSH L+ +A F Sbjct: 69 AHATSAVEAIEDACGIVPPKDGLLLRELTGLGNKMHSHPLHEFLIAPDFIPEKDRVEYIT 128 Query: 306 RV---RETSMKMAEILTGARKTYGLNL-IGGIRRDLLKDDMIQTRQLAQQMRREVQELVD 361 R+ R+T + + + G + N+ +GG+ + + + + ++ + +E V+ Sbjct: 129 RIQQMRKTGQYIVDTI-GGEAIHAPNIKVGGMLKSITPSAVSKIYYKCKEFEKLAKEQVE 187 Query: 362 VLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHAR----DTRADHPFVGYGLLPM 417 L+ P E RT+ G PE + + G + S + + + H + Y + Sbjct: 188 YLI--PIFENRTLVDGTEIPE-KLGYHDFGYLATDSTYGNRENIEQKKVHEYTPYDVYEK 244 Query: 418 EVHSEQGCDVISRLKVRINEV-------------------------YTALNMIDYGLDNL 452 EV + Q C + R+ EV Y + + ++ + Sbjct: 245 EV-AVQACQLFQEYNGRLMEVGPRARFAKFHDFKEKGAMAIHIARAYENVIHVKRAMEII 303 Query: 453 PGGPLMVEGFTYIP-------HRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYAN 505 L V+G T + LG EA RG + H + + ++ + AT N Sbjct: 304 E--ELNVDGLTRAKDPILGDGEKLGLGVHEAARGHNTHQASIDEKGRITYYNAIVATTWN 361 Query: 506 WPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVV 541 P + + + A ++ + DPC SC + ++ Sbjct: 362 IPLIGKAVEAH-YKFAEHVVRAYDPCVSCATQHDIL 396 >UniRef50_Q3AU04 Hydrogenase/sulfur reductase, alpha subunit n=10 Tax=Chlorobiaceae RepID=Q3AU04_CHLCH Length = 426 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 100/426 (23%), Positives = 158/426 (37%), Gaps = 92/426 (21%) Query: 188 HVTSDEPGHFRLFVDGEN--IIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICG 245 H+T E GH + + +N +++A + + R E + + M + FL+ R+CGIC Sbjct: 13 HLTRVE-GHANIHIHVKNGELVEAQWAIIETPRFFEVMLKG-MSAEQAPFLTSRICGICS 70 Query: 246 FAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLAC--HFTGFDS--GF 301 +HS A ++E AM I P A+++R + + E L SH L+L F G S Sbjct: 71 ISHSLANIRALERAMQITPPPLAEVVRRLAMHGETLQSHALHLFFLAVPDFAGLPSVLPL 130 Query: 302 MQFF-RVRETSMKMAE------ILTGARKTYGLNLI-GGIRRDLLKDDMIQTRQLAQQMR 353 M+ +V +++ E I R T+ ++L+ GGI + + + + Q+ + Sbjct: 131 MESHPQVVRAGLQLKELGNSISIAAAGRATHPVSLVLGGITKAPELQQLKELLTMTQERK 190 Query: 354 REVQELVDVL--LSTPNMEQRTVGIGRLD----PEIARDFSNVGPMVRASGHARDTRADH 407 + + V L PN + T I + P I G +V + G RD Sbjct: 191 LALAQAVTFFEELHIPNFTRETEFISLCNGVTYPAIG------GQLVSSDGITRDEN--- 241 Query: 408 PFVGYGLLPMEVHSEQGCDVISRLK---------VRINEVYTALN------MIDYGLDNL 452 Y L+ E + +RL R N Y L+ +GL + Sbjct: 242 ---DYLLMTNEYTRDFSTSKFTRLSRNSSAAGALARFNNNYHLLHPNAQAVAARFGLQPV 298 Query: 453 PGGPLM------VEGF-----------------------TYIPHR-FALGFAEAPRGDDI 482 P M VE Y P A G EAPRG Sbjct: 299 CHNPFMNNIAQLVECVHILEDAEELIGMVMDMKGEETKCHYTPQAGAATGAVEAPRGILY 358 Query: 483 HWSMTGDNQKLYRWRCRAATYANWPTL--------RYMLR-----GNTVSDAPLIIGSLD 529 H+ T D + R C T N + +LR G +++ S D Sbjct: 359 HYMETNDEGMVVRADCIIPTTQNNGNIYDDLQALAAELLREGKCDGEIQLQCEMLVRSYD 418 Query: 530 PCYSCT 535 PC SC+ Sbjct: 419 PCISCS 424 >UniRef50_A4J658 NADH-quinone oxidoreductase n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J658_DESRM Length = 147 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 2/64 (3%) Query: 88 ITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYP 147 + V+ +D N PE PS+ P A+W EREV D+ G++ PD RR++L DDW E +P Sbjct: 78 LHVKTRLDRNNPEVPSMVPIWGGAIWQEREVFDLLGIVFTDHPDLRRILLADDW--EGHP 135 Query: 148 LRKD 151 LR+D Sbjct: 136 LRRD 139 >UniRef50_C6A408 Membrane-bound hydrogenase MBH 1, subunit Mbh1K (Hydrogenase subunit) n=1 Tax=Thermococcus sibiricus MM 739 RepID=C6A408_THESM Length = 174 Score = 59.3 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 5/97 (5%) Query: 57 LSVLFGNDERKLNGHYAVYYVLSM--EKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWG 114 S++ G D H + Y L + E + V P+ PS+ P++V Sbjct: 57 FSIIIGEDR---GDHLSATYHLELFCENSPSLSVAVITSCPKEDPKIPSLGDVFPSSVPY 113 Query: 115 EREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKD 151 ERE ++ G+I G+PD RRL LPDD+P+ +YPLR D Sbjct: 114 ERENQEFLGIIFEGIPDSRRLFLPDDFPEGIYPLRLD 150 >UniRef50_B6YU97 Membrane bound hydrogenase, NiFe-hydrogenase large subunit 1 n=7 Tax=Thermococcaceae RepID=B6YU97_THEON Length = 189 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 45/81 (55%) Query: 72 YAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPD 131 Y + +L + + V V V + P P ++ P A+ ERE +M G++ G+PD Sbjct: 87 YMSHILLHYDNAPAVSLLVDVRVPKDDPVIPDISDIFPIALQYEREAAEMMGIVFEGIPD 146 Query: 132 ERRLVLPDDWPDELYPLRKDS 152 RRL LPDD+P+ +YPLR D Sbjct: 147 SRRLFLPDDFPEGIYPLRLDE 167 >UniRef50_B3QY46 NADH-quinone oxidoreductase subunit C n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=NUOC_CHLT3 Length = 240 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/83 (42%), Positives = 43/83 (51%), Gaps = 2/83 (2%) Query: 69 NGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVG 128 +G V Y K +TV+V P PSV A W ERE DMYG++ G Sbjct: 146 DGRLGVVYNFDALATHKHKLTVKVFCSKEDPRIPSVAEIWLTADWHEREAYDMYGIVFEG 205 Query: 129 LPDERRLVLPDDWPDELYPLRKD 151 PD RR++ PDDW + YPLRKD Sbjct: 206 HPDMRRILCPDDW--DGYPLRKD 226 >UniRef50_C9LVK2 NADH-quinone oxidoreductase n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LVK2_9FIRM Length = 165 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 75/155 (48%), Gaps = 16/155 (10%) Query: 1 MSEEKLGQHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQG----GW 56 M + + LA L E FP D ++ V P V+ L K+G G Sbjct: 1 MRTQYFSKERLAKLVEVFPKATFD---AEAEEPAFIVTAADFPAVLRALKEKEGFDRLGN 57 Query: 57 LSVLFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGER 116 L+ + D ++ VY++ +ME+ K + V+ +D+ P S T P A + ER Sbjct: 58 LTAVDWKDHIEM-----VYHLYNMEENVK--LEVKAALDSAAPVIESATSLYPGAEFEER 110 Query: 117 EVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKD 151 EV D+ G+ + PD RR+++PD++P +PLRKD Sbjct: 111 EVYDLMGVEFLSHPDLRRILMPDNYP--AHPLRKD 143 >UniRef50_P31891 Uptake hydrogenase large subunit n=45 Tax=root RepID=MBHL_RALEH Length = 618 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 54/96 (56%), Gaps = 3/96 (3%) Query: 195 GHFR--LFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAY 252 GH R + VD N+I + RG+E + + R + F+ +R+CG+C H+ A Sbjct: 28 GHMRCEVNVDANNVIRNAVSTGTMWRGLEVILKGRDPRDAWAFV-ERICGVCTGCHALAS 86 Query: 253 TTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNL 288 +VENA+ I++P+ A +IR I+ + ++H H ++ Sbjct: 87 VRAVENALDIRIPKNAHLIREIMAKTLQVHDHAVHF 122 >UniRef50_Q1NLI0 NADH dehydrogenase (Ubiquinone), 30 kDa subunit n=4 Tax=Deltaproteobacteria RepID=Q1NLI0_9DELT Length = 208 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 2/66 (3%) Query: 86 CWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDEL 145 C +T+RV V + P+ P+++ P A W ERE D +GL+ G PD L+LP+D + Sbjct: 142 CRVTLRVRVPRSLPQLPTISDIYPGANWHEREAHDFFGLVFTGHPDLSPLLLPED--ADF 199 Query: 146 YPLRKD 151 +PLRKD Sbjct: 200 HPLRKD 205 >UniRef50_UPI0001985C72 PREDICTED: similar to NADH dehydrogenase subunit 7 n=1 Tax=Vitis vinifera RepID=UPI0001985C72 Length = 238 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 69/153 (45%) Query: 243 ICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFM 302 + A A++++VE + +VP RAQ IR + E+ R+ +H L L G + + Sbjct: 82 VSTMAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRISNHSLALTTHAMDVGASTPSL 141 Query: 303 QFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDV 362 RE ++ E ++GAR GG+ +DL QQ + EL ++ Sbjct: 142 WASEEREKLLEFYERVSGARMHASFIRPGGVAQDLPLGLCRDIDSSTQQFASRIDELEEM 201 Query: 363 LLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVR 395 +QR V IG + + A+D+ G M+R Sbjct: 202 STGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLR 234 >UniRef50_A7NIW0 NADH-quinone oxidoreductase subunit C n=6 Tax=Chloroflexi (class) RepID=NUOC_ROSCS Length = 174 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 47/145 (32%), Positives = 73/145 (50%), Gaps = 9/145 (6%) Query: 11 LAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYK---QGGWLSVLFGNDERK 67 LA L A P +L + + + L+V V+ + +V FL + +L L G D Sbjct: 9 LARLQAALPDALLGSS-EFRGDLSVHVRPERIVDVARFLRDDPELRYHFLENLCGVDYLG 67 Query: 68 LNGHY-AVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIP 126 + VY++LS + I ++V V P PS+T P A + ERE DM+G++ Sbjct: 68 REPRFEVVYHLLSF--ANRHRICLKVGVSERNPSVPSLTELWPGANYHERETFDMFGIVF 125 Query: 127 VGLPDERRLVLPDDWPDELYPLRKD 151 G P R+++P+DW E +PLRKD Sbjct: 126 TGHPCLDRILMPEDW--EGHPLRKD 148 >UniRef50_O66988 Hydrogenase large subunit n=1 Tax=Aquifex aeolicus RepID=O66988_AQUAE Length = 416 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 4/94 (4%) Query: 214 FYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGI-QVPERAQMIR 272 FY RG+EK+ R + + ++ R+CGICG AH A ++ENA+GI ++PE+A++ R Sbjct: 33 FYSTRGIEKVLRER-PFMDALVINPRICGICGHAHLIATVRAIENAIGIKEIPEKAKITR 91 Query: 273 AILLEVERLHSHL--LNLGLACHFTGFDSGFMQF 304 + E + +H+ L + F F QF Sbjct: 92 LVTQITEMVQNHVKWFYLFVMPDFLKFKESLSQF 125 >UniRef50_B3E9J3 Nickel-dependent hydrogenase large subunit n=5 Tax=Geobacter RepID=B3E9J3_GEOLS Length = 479 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 52/199 (26%), Positives = 96/199 (48%), Gaps = 31/199 (15%) Query: 195 GHFRLFVDGENIIDADYRLFYVH--RGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAY 252 GH ++FV+ D V+ RG EK+ M N + ++ R+CG+C AH A Sbjct: 23 GHAKVFVNLAEDGSLDNAGLVVNELRGFEKIL-VGMEANRMPHITARICGVCPTAHHIAA 81 Query: 253 TTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACH---FTGFDS--------GF 301 + ++++A G+ P A ++R ++ +HSH L+L + G D+ G Sbjct: 82 SNALDHACGVVAPPAAMLLRELMYMGHIIHSHALSLFVLQGPDLVLGLDADPAIRNVVGI 141 Query: 302 MQ--------FFRVRETSMKMAEILTGARKTYGL-NLIGGI-------RRDLLKDDMIQT 345 +Q R+R ++ EI+ G R T+ + ++ GGI +R +L+ + + Sbjct: 142 VQANPEVAKKALRIRTVGQRLNEIV-GGRGTHPVTSVAGGITFVLDSEKRAMLQSLVDEG 200 Query: 346 RQLAQQMRREVQELVDVLL 364 +QLA+ + V++LV +L Sbjct: 201 KQLAKDLAPVVKQLVVTML 219 >UniRef50_A9W1N1 NADH-quinone oxidoreductase subunit C n=9 Tax=Alphaproteobacteria RepID=NUOC_METEP Length = 219 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/78 (44%), Positives = 48/78 (61%), Gaps = 5/78 (6%) Query: 74 VYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDER 133 VY++LS+ + + V+V+ DA P PS P PAA W ERE D+YG++ G PD R Sbjct: 94 VYHLLSLRHNMR--VRVKVQTDAATP-VPSAIPVFPAANWYERETYDLYGILFSGHPDLR 150 Query: 134 RLVLPDDWPDELYPLRKD 151 RL+ D+ E +PLRKD Sbjct: 151 RLLT--DYGFEGHPLRKD 166 >UniRef50_B5I9P0 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=1 Tax=Aciduliprofundum boonei T469 RepID=B5I9P0_9EURY Length = 176 Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 32/111 (28%), Positives = 59/111 (53%), Gaps = 3/111 (2%) Query: 41 YLPEVVEFLYYKQGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPE 100 ++ + E Y +SV ++ +L H+ + Y ++ T I++RV++ N Sbjct: 47 FMDLLFEIQDYPHFAVISVTDLGEDMELLYHFTIDYGKQNDEKT---ISLRVKLPKNDLR 103 Query: 101 YPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKD 151 ++T +P A+ ERE+ +M G+ +GL D R LP++WP+ YP R+D Sbjct: 104 IETITDLIPGAMISEREIHEMVGVDFIGLEDTRHFFLPENWPEGKYPWRRD 154 >UniRef50_C1ZK67 NADH-quinone oxidoreductase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZK67_PLALI Length = 179 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 10/86 (11%) Query: 74 VYYVLSMEKGTKCWITV--------RVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLI 125 VY++LS+ + + V + DA PE PS+ AA W ERE DM+G+ Sbjct: 83 VYHLLSLSRRQTLTLKVILPRPGGDELSKDAELPEIPSIADLWLAANWHEREAFDMFGIR 142 Query: 126 PVGLPDERRLVLPDDWPDELYPLRKD 151 G PD RR++ P+DW E YPLRKD Sbjct: 143 FKGHPDLRRILCPEDW--EGYPLRKD 166 >UniRef50_B5IS37 Respiratory-chain NADH dehydrogenase, 30 Kd subunit domain protein n=1 Tax=Thermococcus barophilus MP RepID=B5IS37_9EURY Length = 184 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 11/95 (11%) Query: 62 GNDERKLNGHYAVYYVLSMEKGTKCW----ITVRVEVDANKPEYPSVTPRVPAAVWGERE 117 G D K+ + V+Y + W IT++ ++ + P++T +P A ERE Sbjct: 72 GGDSIKMIYSFGVFY-------SNPWGEVSITLKFDLPKDSLILPTITDLMPGAETNERE 124 Query: 118 VRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDS 152 +R+M G+ GL ++R L LPDDWP+ YP R+D Sbjct: 125 IREMLGIEFEGLKNKRHLFLPDDWPEGKYPWRRDE 159 >UniRef50_C4PZT7 NADH-ubiquinone oxidoreductase fe-s protein 2 (Ndufs2), putative n=1 Tax=Schistosoma mansoni RepID=C4PZT7_SCHMA Length = 538 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/197 (24%), Positives = 81/197 (41%), Gaps = 27/197 (13%) Query: 358 ELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPM 417 ++ D+L P RT +G + E A D G M+R SG D R P+ Y + Sbjct: 128 QISDLLFDNPIWITRTKDVGIVSAEDALDLGFSGVMLRGSGIKWDLRKTQPYDAYEDMDF 187 Query: 418 EVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIP----------- 466 +V D R VR+ E+ +L +++ L+ +P G + V+ P Sbjct: 188 DVPVGVHGDCYDRFIVRMEEMRQSLRIMEQCLNKMPKGEIKVDDAKICPPKRAEMKSSME 247 Query: 467 ---HRFAL---GF----------AEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLR 510 H F L G+ EAP+G+ + ++ K YR + +A +A+ + Sbjct: 248 ALIHHFKLFSEGYLVPPGSTYTAVEAPKGEFGVYLVSDGTNKPYRCKIKAPGFAHMAAID 307 Query: 511 YMLRGNTVSDAPLIIGS 527 + RG + D +I S Sbjct: 308 KLCRGFMLPDVVAVIVS 324 >UniRef50_B5IEA3 Nickel-dependent hydrogenase superfamily n=3 Tax=Aciduliprofundum boonei T469 RepID=B5IEA3_9EURY Length = 421 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 95/413 (23%), Positives = 167/413 (40%), Gaps = 78/413 (18%) Query: 195 GHFRLFVDGENIIDADYR--LFYVHRGMEKLAETRMG--YNEVTFLSDRVCGICGFAHST 250 GH L ++ E D + + +F VH G +G Y + L+ R+CGIC AH Sbjct: 16 GHANLTIEIE---DENLKRVIFGVHEGSRYFEAFMVGKSYKYLPELAGRICGICTVAHEI 72 Query: 251 AYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLAC--HFTGFDSGF------- 301 A +VE+A+GI++ E + +R ++L + SH+L+L + +S Sbjct: 73 ASVRAVEDALGIEISEEVEDLRKLMLISSHIQSHILHLYFLALPDYRNVESIIELANKNV 132 Query: 302 ---MQFFRVRETSMKMAEILTGARKTYGLNLI-GGIRRDLLKDDMIQTRQLAQQMRREVQ 357 + F ++E S M E L G R ++ G + + + K+ + + + +++ + Sbjct: 133 NLVKKAFELKEASNYMTE-LIGGRAVQPCTIVPGKVSKRIGKETIERYIKKMKEIYPFLL 191 Query: 358 ELVDVLLST--PNMEQRTVGIGRLD--------PEIARDFSNVGPMVRASGHARD----- 402 + ++ LS P E+ + + D EIA S P + H R+ Sbjct: 192 DTAELFLSLEYPKYERESEYVALWDGHSIPLYKGEIATLSSIFDPH-QYQEHIREWVVEY 250 Query: 403 TRADHPFVG------YGLLPMEVH---SEQGCDVISRLKVR--------INEVYTALNMI 445 + A H + L + ++ E+ ++ R VR IN + AL + Sbjct: 251 SSAKHSLIEGRDYMVGALARLNINRNLREEARELAERYGVRFPSNRIAWIN-LAQALENV 309 Query: 446 DYGLDNLPGGPLMVEGFTYIPHRF--------ALGFAEAPRGDDIHWSMTGDNQKLYRWR 497 + L+ + + E Y PH+ +G EAPRG IH + + Y Sbjct: 310 HFALEAMEIAENLKE---YDPHKINIPRVSGEGVGVIEAPRGLLIHHYKIKNGKCTY-VN 365 Query: 498 CRAATYANWPTLRYMLRG---NTVS--------DAPLIIGSLDPCYSCTDRMT 539 T N + +L+G VS +A II + DPC SC+ +T Sbjct: 366 IITPTAMNTENIERILKGYISQIVSKNDEYIKMEAEKIIRAYDPCISCSVHVT 418 >UniRef50_P18188 Periplasmic [NiFe] hydrogenase large subunit n=22 Tax=Deltaproteobacteria RepID=PHNL_DESFR Length = 564 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 56/96 (58%), Gaps = 4/96 (4%) Query: 195 GHFRLFVDGEN--IIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAY 252 GH R+ V+ EN + DA + + RG+E + + R + F + R CG+C + H+ A Sbjct: 26 GHLRIMVEVENGKVKDA-WSSSQLFRGLEIILKGRDPRDAQHF-TQRACGVCTYVHALAS 83 Query: 253 TTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNL 288 + V++A+ + +P A+M+R +++ + LH HL++ Sbjct: 84 SRCVDDAVKVSIPANARMMRNLVMASQYLHDHLVHF 119 >UniRef50_Q11XR7 NADH-quinone oxidoreductase n=4 Tax=Sphingobacteriales RepID=Q11XR7_CYTH3 Length = 168 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/150 (34%), Positives = 69/150 (46%), Gaps = 15/150 (10%) Query: 12 AALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFL------YYKQGGWLSVLFGNDE 65 AA+ E F + Q + V+ +L ++ FL ++ Q LS L G D Sbjct: 10 AAIAERFGEAAITGEQAALAQPQLLVQKAFLKDICFFLRDDERFFFDQ---LSCLTGLDN 66 Query: 66 RKL-NGHYAVYYVLSMEKGTKCWITVRVEVDANK---PEYPSVTPRVPAAVWGEREVRDM 121 + N +Y++ S+ I V E K PE PSV A W ERE D+ Sbjct: 67 GPVKNTVEVIYHLYSIPFHLFLVIKVEAERGDGKDILPEIPSVEQVWRTADWHEREAFDL 126 Query: 122 YGLIPVGLPDERRLVLPDDWPDELYPLRKD 151 YG+ G PD RR++LP DW E YPLRKD Sbjct: 127 YGIRFSGHPDLRRILLPADW--EGYPLRKD 154 >UniRef50_B9L8N1 Nickel-dependent hydrogenase, large subunit n=1 Tax=Nautilia profundicola AmH RepID=B9L8N1_NAUPA Length = 387 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/180 (22%), Positives = 89/180 (49%), Gaps = 4/180 (2%) Query: 195 GHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTT 254 G L ++G+ ID F+ + G+E+ + + Y + ++ RVCGICG +H A Sbjct: 13 GEATLKIEGDKKIDFVQIEFWQYHGIEEYLKNK-NYMDALVINPRVCGICGHSHLHATVK 71 Query: 255 SVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSM-- 312 +E ++ ++AQ+ R + +E + +H+ + + T F V+ +S Sbjct: 72 VIEKVFKAKISKKAQIFREVTSLLEIVENHIKWFYITIYPTQIKDKEYLFKAVKFSSKIS 131 Query: 313 KMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE-VQELVDVLLSTPNMEQ 371 K IL G + GG+ D ++++ + L ++++ E ++E++D L++ ++E+ Sbjct: 132 KAIAILAGQFPHNSYMVPGGVTCDPTYMEIMRLKDLIKEIKEEYIKEIMDENLTSHDLER 191 >UniRef50_C1RIP5 NADH dehydrogenase subunit C n=2 Tax=Actinomycetales RepID=C1RIP5_9CELL Length = 309 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/130 (34%), Positives = 66/130 (50%), Gaps = 15/130 (11%) Query: 30 KDQLTVTVKVNYLPEVVEFL-------YYKQGGWLSVLFGNDE-RKLNGHYAVYYVLSME 81 + +LT+ V +L EVV+ L + G V F +D R+L +AVY ++S+ Sbjct: 162 RGELTLNVAREHLVEVVQQLRDDPDLRFELSLGVSGVHFPHDAGREL---HAVYQIVSVT 218 Query: 82 KGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDW 141 G + + + V V P PS T PA W ERE D +G++ G P R+ +PDDW Sbjct: 219 HGRR--LRLEVAVPEGDPHVPSTTAVYPANDWHERETWDFFGIVFDGHPGLARIQMPDDW 276 Query: 142 PDELYPLRKD 151 P +P RKD Sbjct: 277 PG--HPQRKD 284 >UniRef50_P0ACE1 Hydrogenase-2 large chain n=154 Tax=Bacteria RepID=MBHM_ECO57 Length = 567 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 2/95 (2%) Query: 195 GHFRLFVDGEN-IIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYT 253 GH R+ + EN ++ + + RGME++ + R + + R+CG+C H+ + Sbjct: 15 GHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNR-DPRDAWMIVQRICGVCTTTHALSSV 73 Query: 254 TSVENAMGIQVPERAQMIRAILLEVERLHSHLLNL 288 + E+A+ I VP AQ IR I+L H H+++ Sbjct: 74 RAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHF 108 >UniRef50_A2BJ95 NAD(P)H-quinone oxidoreductase subunit J n=1 Tax=Hyperthermus butylicus DSM 5456 RepID=A2BJ95_HYPBU Length = 174 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 1/118 (0%) Query: 34 TVTVKVNYLPEVVEFLYYKQGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVE 93 + V+ + + EVV L +L + G DE VY+ + + V Sbjct: 24 ALVVEPDRIREVVAELKNTGYDYLLSISGVDEPDAKRIRIVYH-FARSSNPGDVVAVETV 82 Query: 94 VDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKD 151 V ++P S+ PAA+ ERE +M G++ G PD R L+LP+DWP+ +YPLRKD Sbjct: 83 VPRDEPVIDSIHDVYPAALLHEREEHEMLGIVFRGNPDSRHLLLPEDWPEGVYPLRKD 140 >UniRef50_D1CCD3 NADH-quinone oxidoreductase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CCD3_THET1 Length = 179 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 4/79 (5%) Query: 73 AVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDE 132 VY++ S+ + VRV+ + PS+T A WGERE DM+G++ G PD Sbjct: 88 VVYHLYSIPLNHAIRMKVRVD---DGQHVPSLTGLWELANWGERETYDMFGIVFEGHPDL 144 Query: 133 RRLVLPDDWPDELYPLRKD 151 RR++LP+DW D +PLRKD Sbjct: 145 RRILLPEDWQDG-FPLRKD 162 >UniRef50_C4V3S3 Possible NADH (Or F420H2) dehydrogenase, subunit C n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V3S3_9FIRM Length = 162 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 2/65 (3%) Query: 87 WITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELY 146 W+T++V + + P PSVTP P A + EREV D+ G++ G PD RR+ DD+ + Sbjct: 83 WLTLKVTLPHDAPVLPSVTPVFPGAEFEEREVYDLMGIVFTGHPDLRRVFHADDFIG--H 140 Query: 147 PLRKD 151 PLRKD Sbjct: 141 PLRKD 145 >UniRef50_C1F9E1 NADH-quinone oxidoreductase n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F9E1_ACIC5 Length = 159 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 72/140 (51%), Gaps = 4/140 (2%) Query: 11 LAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVLFGNDERKLNG 70 + AL A PGV+ + +++LT+T+ + + E + + S D Sbjct: 16 IQALESAAPGVITGAKYD-RNELTLTIARDSIRRACEIVRAAGYNFFSDCTCVDWYPSEP 74 Query: 71 HYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLP 130 + V Y L + K + + V VD++ P S+T PAA + EREV D++G+ G P Sbjct: 75 RFQVTYHL-LSHRLKQRVRLCVMVDSSDPSVESITSIWPAANYYEREVWDLFGVRFHGHP 133 Query: 131 DERRLVLPDDWPDELYPLRK 150 D RR+++P++W E +PL+K Sbjct: 134 DLRRIMMPEEW--EGHPLQK 151 >UniRef50_D2R5G8 NADH (Or F420H2) dehydrogenase, subunit C n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R5G8_9PLAN Length = 166 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 3/86 (3%) Query: 66 RKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLI 125 R + + Y+L+ T ITVRV ++ + PS+ P A W ERE DM+G++ Sbjct: 64 RDAKDRFGLVYLLA-NTVTAERITVRVYLNEPELTIPSMVPLYAGANWLEREAFDMFGIV 122 Query: 126 PVGLPDERRLVLPDDWPDELYPLRKD 151 G PD RR+++P+++ E +PLRKD Sbjct: 123 FEGHPDLRRIMMPEEF--EAHPLRKD 146 >UniRef50_C6A3Z4 Membrane-bound hydrogenase MBH 2, subunit Mbh2K (Hydrogenase subunit) n=1 Tax=Thermococcus sibiricus MM 739 RepID=C6A3Z4_THESM Length = 186 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 40/65 (61%) Query: 88 ITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYP 147 I ++ ++ NK P++T + A ERE+R+M G+ GL ++R L LPDDWP+ YP Sbjct: 96 IVIKFDLPKNKLVLPTITDLMMGAETNEREIREMLGVEFDGLKNKRHLFLPDDWPEGKYP 155 Query: 148 LRKDS 152 R+D Sbjct: 156 WRRDE 160 >UniRef50_A9BJL7 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=2 Tax=Thermotogaceae RepID=A9BJL7_PETMO Length = 184 Score = 55.5 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 39/144 (27%), Positives = 72/144 (50%), Gaps = 9/144 (6%) Query: 22 VLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGW--LSVLFGNDERKLNGHYAVYYVLS 79 + D K+++++ V+ N LP ++ +L K GW LS++ D K N VY + + Sbjct: 20 IKDFTTPKKNEISIVVEQNNLPTILTYL--KDKGWKQLSLITCVDWIKENKFELVYVLFN 77 Query: 80 MEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPD 139 G V+ +++ PEY S+ P A + ER++ + +G+ G D + + + Sbjct: 78 WANGIT--FVVKTKIERENPEYISIIDIFPGARYYERDIHEFFGVKFEGNSDSEKPLFLE 135 Query: 140 DWPDELYPLRK--DSMDYRQRPAP 161 W D+ P+RK D ++Y +R P Sbjct: 136 LWDDKP-PMRKDFDPLEYSKRKFP 158 >UniRef50_B9L171 NADH-quinone oxidoreductase n=2 Tax=Thermomicrobia (class) RepID=B9L171_THERP Length = 204 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 76/147 (51%), Gaps = 17/147 (11%) Query: 14 LNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFL---------YYKQGGWLSVLFGND 64 + E FP + A +D++T+ V L +VV+FL + + +L+ + Sbjct: 36 VRERFPDA-FEEATVFRDEMTIRVARPALRDVVDFLRLHPELRYNHLTDITAVDLLYLRE 94 Query: 65 ERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGL 124 + + V ++ S+ + + + V+ VD + PS+ P A W ERE DM+G+ Sbjct: 95 RPRFD---VVVHLYSIPRRQR--LRVKCGVDDGE-MVPSLVPIFAGANWLERECYDMFGI 148 Query: 125 IPVGLPDERRLVLPDDWPDELYPLRKD 151 + G PD RR++LP+DW DE +PLRKD Sbjct: 149 VFEGHPDLRRILLPEDW-DEGHPLRKD 174 >UniRef50_D1U6F4 Nickel-dependent hydrogenase large subunit n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U6F4_9DELT Length = 572 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 46/174 (26%), Positives = 84/174 (48%), Gaps = 27/174 (15%) Query: 195 GHFRL--FVDGENIID--ADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHST 250 GH R+ V+ IID + +LF RG+E + + R + F + R CG+C + H+ Sbjct: 28 GHLRVEAVVENGKIIDVRSSSQLF---RGLEIILKGRDPRDAQHF-TQRSCGVCTYTHAL 83 Query: 251 AYTTSVENAMGIQ--VPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVR 308 A V+NA+G+ +P A +IR ++L + +H HL++ H D F+ Sbjct: 84 ASVRCVDNAVGVDKVLPRNATIIRNLVLAAQFMHDHLVHF---YHLHALD--FVDVSACL 138 Query: 309 ETSM-KMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVD 361 + K AE+ G +T +R+D + ++ ++ Q+ + V+ +VD Sbjct: 139 NADVAKAAEMAAGVAQT--------VRKDPV---LVSSKADLQKTKDTVKSIVD 181 >UniRef50_A6Q3L3 Ni-Fe hydrogenase, large subunit HupV n=1 Tax=Nitratiruptor sp. SB155-2 RepID=A6Q3L3_NITSB Length = 403 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 79/169 (46%), Gaps = 3/169 (1%) Query: 202 DGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMG 261 D + I D LF +RG+E++ R ++ + ++ R+CGICG AH A +E+ Sbjct: 20 DKQTITDVKV-LFPHYRGIEEILRGRDPWDALV-INPRICGICGHAHLQATAMVLESIFQ 77 Query: 262 IQVPERAQMIRAILLEVERLHSHLLNLGLAC-HFTGFDSGFMQFFRVRETSMKMAEILTG 320 + + ++A+ IR I E + +H+ L H F + + T K+ + +G Sbjct: 78 VNITQKAKNIREITRFCEIIQNHIKWFYLVIFHELNIPYDFTKVHHLIVTINKLLALFSG 137 Query: 321 ARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNM 369 ++GG+ D ++ Q + L QQ+R + +L+ L N+ Sbjct: 138 QWPHSSYCVVGGVTCDPTSLEIHQAKTLIQQIRDQFIQLIGKLHDPLNL 186 >UniRef50_B5YHQ8 Hydrogenase/sulfur reductase, alpha subunit n=2 Tax=Bacteria RepID=B5YHQ8_THEYD Length = 442 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/165 (23%), Positives = 80/165 (48%), Gaps = 14/165 (8%) Query: 232 EVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGL- 290 E ++ R+CGIC H+ A + E+A+GI+ E+ ++R +LL E+L SH+L++ L Sbjct: 55 EAPHITCRICGICSCGHTLASIQAAEDALGIKPTEQTVLLRKLLLHYEQLDSHILHIYLL 114 Query: 291 -ACHFTGFDS----------GFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLK 339 A G S ++ R++ ++ +IL G +IGG + + Sbjct: 115 VAPDLVGVPSFVPLIKSHPDVVIRALRMKRLCNELCDILVGRHVHPISAVIGGFTKLPSE 174 Query: 340 DDMIQTRQLAQQMRREVQELVDVL--LSTPNMEQRTVGIGRLDPE 382 D+ + + ++++++ +++ L P E+ T I ++ E Sbjct: 175 IDLEEMHKKLLALQKDIEVTIELFKDLKFPEFERDTEYIALVNDE 219 >UniRef50_B0TH79 Proton-translocating NADH-ubiquinone oxidoreductase, chain c n=2 Tax=Heliobacteriaceae RepID=B0TH79_HELMI Length = 149 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 4/87 (4%) Query: 65 ERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGL 124 +RK G VY + S++ + + V+ A + + PSVT P A W EREV D+ G+ Sbjct: 60 DRKDAGFEVVYQLFSLKH--RLDLRVKTRTAAEEAQVPSVTGIWPGADWMEREVFDLMGV 117 Query: 125 IPVGLPDERRLVLPDDWPDELYPLRKD 151 G P+ RL+LPD++ E +PLRKD Sbjct: 118 TFAGHPNMARLLLPDEF--EGHPLRKD 142 >UniRef50_A1W1H6 NADH-quinone oxidoreductase n=18 Tax=Campylobacter RepID=A1W1H6_CAMJJ Length = 263 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 7/89 (7%) Query: 69 NGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVG 128 NG Y +L++EK + I V V K SV A W ERE+ DM+G+ + Sbjct: 96 NGFEVFYQLLNLEKKLRVRIKTFVGV---KERLQSVAHVFKGANWSEREIYDMFGIFIIN 152 Query: 129 LPDERRLVLPDDWPD----ELYPLRKDSM 153 P+ +R+++PDDW + YPL+ D Sbjct: 153 HPNLKRILMPDDWFGHPLLKTYPLKGDEF 181 >UniRef50_D2L5T2 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=2 Tax=Desulfovibrio RepID=D2L5T2_9DELT Length = 182 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 73/155 (47%), Gaps = 17/155 (10%) Query: 5 KLGQHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVLFGND 64 KLG +A ++ A G L+VT+ + L V + K+G L + +D Sbjct: 8 KLGAVCMAPMDFATTGC----------SLSVTLAADTLRAAVA-VCDKEGYLLEDVMASD 56 Query: 65 ERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGL 124 L Y V Y LS+ G I +R+ V + PE P+++ P A W ERE D YG+ Sbjct: 57 ---LQEGYEVAYHLSLLDGAN-RIVLRLTVPHDAPEVPTISDIYPGADWHERECFDFYGI 112 Query: 125 IPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRP 159 G P+ L+LP+D + +PLRK + + P Sbjct: 113 RFAGHPNLYFLLLPEDTTE--HPLRKAASARKSLP 145 >UniRef50_Q24X55 Hup-type Ni,Fe-hydrogenase large subunit n=6 Tax=Bacteria RepID=Q24X55_DESHY Length = 518 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 56/105 (53%), Gaps = 5/105 (4%) Query: 195 GHFRLFVDGENIIDADYR-LFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYT 253 GH ++ V+ N + D + + ++RG E L R + T++++R CG+C +H A + Sbjct: 14 GHLKVEVEVTNGVVTDAKSIGTMYRGFEPLLRGR-DPRDATYVTERTCGVCAGSHGWASS 72 Query: 254 TSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFD 298 +++ A G +VP ++IR +++ LH H L+ H + D Sbjct: 73 LALDQAFGAKVPTGGRLIRNLMIGAMWLHDHPLHF---YHLSALD 114 >UniRef50_Q02CU1 NADH-quinone oxidoreductase n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q02CU1_SOLUE Length = 157 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 65/125 (52%), Gaps = 6/125 (4%) Query: 29 TKDQLTVTVKVNYLPEVVEFLYYKQGGW-LSVLFGNDERKLNGHYA-VYYVLSMEKGTKC 86 T +LT+ + V + + FL Y Q +S + D + VY++ S+E+ + Sbjct: 29 TFGELTLEIAVPKIASICGFLKYDQKFVRVSTVTAVDRYPAEPRFEIVYHLHSIERNQR- 87 Query: 87 WITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELY 146 + ++ + P SVT A W EREV D++G+ + PD RR+++PDDW E Y Sbjct: 88 -VRLKALLPGADPVIESVTGVWRGAGWYEREVFDLFGVRFLNHPDLRRILMPDDW--EGY 144 Query: 147 PLRKD 151 PLRKD Sbjct: 145 PLRKD 149 >UniRef50_C0VXU2 Hydrogenase (Acceptor) n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VXU2_9CORY Length = 584 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 53/95 (55%), Gaps = 2/95 (2%) Query: 195 GHFRLFVDGENI-IDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYT 253 GH R+ ++ ++ I + RG+E + + + F+ R+CG+C HS A Sbjct: 16 GHLRIELEADDKKISKAWAETTQFRGIETVVKGHDPRDVWAFVG-RICGVCTGTHSIASV 74 Query: 254 TSVENAMGIQVPERAQMIRAILLEVERLHSHLLNL 288 +VE+A I +P++A+ IR ++LE + +H H+++ Sbjct: 75 AAVEDAFDITLPDQARRIRELILESQEVHDHVVHF 109 >UniRef50_B3TC55 Putative Respiratory-chain NADH dehydrogenase, 30 Kd subunit n=1 Tax=uncultured marine microorganism HF4000_APKG10H11 RepID=B3TC55_9ZZZZ Length = 107 Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 4/84 (4%) Query: 69 NGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVG 128 + ++ + YV S E+G + +I V++ D KP+ S+ + W E+E+ +++G+ +G Sbjct: 20 DNYFLLLYVFSTEEGKQKFIEVKIPRD--KPKIQSIYKICDSVFWHEQEMSELFGVKFIG 77 Query: 129 LP-DERRLVLPDDWPDELYPLRKD 151 P D + L+L DDWP YP RKD Sbjct: 78 HPRDGKHLLLRDDWPSG-YPHRKD 100 >UniRef50_A8LIT7 NADH-quinone oxidoreductase subunit C n=51 Tax=Alphaproteobacteria RepID=NUOC_DINSH Length = 215 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 31 DQLTVTVKVNYLPEVVEFLYYKQGGWLSVLFG----NDERKLNGHYAVYYVLSMEKGTKC 86 D+LTV N + +V FL S L + + VY+ LSM + + Sbjct: 37 DELTVVATPNSIVGLVAFLKTDATCKFSTLIDITAVDYPERAQRFDVVYHFLSMYQNHRI 96 Query: 87 WITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELY 146 I V V D PS+ P+A W EREV DM+G++ G PD RR++ D+ Y Sbjct: 97 RIRVPVREDDI---VPSIISEHPSANWFEREVFDMFGILFSGHPDLRRILT--DYGFRGY 151 Query: 147 PLRKD 151 PLRKD Sbjct: 152 PLRKD 156 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P16431 Formate hydrogenlyase subunit 5 n=104 Tax=Bacter... 767 0.0 UniRef50_P77329 Hydrogenase-4 component G n=130 Tax=Bacteria Rep... 677 0.0 UniRef50_A1RWL3 NADH dehydrogenase (Ubiquinone), 30 kDa subunit ... 655 0.0 UniRef50_B6YTW8 Hydrogenase 4, component G or formate hydrogen l... 635 e-180 UniRef50_C5A3D4 Formate hydrogenlyase I subunit F (Mhy1F) n=2 Ta... 612 e-173 UniRef50_B6YWP8 Hydrogenase 4, subunit 5 n=1 Tax=Thermococcus on... 609 e-173 UniRef50_Q2RXM4 NADH-ubiquinone oxidoreductase n=1 Tax=Rhodospir... 603 e-171 UniRef50_B7R5K6 Hydrogenase-4 component G n=1 Tax=Thermococcus s... 594 e-168 UniRef50_B5YKR2 Hydrogenase-4 component G n=1 Tax=Thermodesulfov... 593 e-168 UniRef50_Q1PZL4 Similar to membrane-bound [NiFe]-hydrogenase-3, ... 592 e-167 UniRef50_A1ASR5 NADH dehydrogenase (Ubiquinone), 30 kDa subunit ... 585 e-165 UniRef50_A3DNE9 NADH dehydrogenase (Ubiquinone), 30 kDa subunit ... 574 e-162 UniRef50_Q0W2B9 Hydrogenase, large subunit-like protein (HycE-li... 561 e-158 UniRef50_Q3A825 NADH-quinone oxidoreductase subunit B/C/D n=103 ... 554 e-156 UniRef50_D2MJM9 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 ... 549 e-154 UniRef50_C8W240 Hydrogenase, large subunit-like protein n=1 Tax=... 548 e-154 UniRef50_B1ZSF2 NADH dehydrogenase (Quinone) n=1 Tax=Opitutus te... 539 e-152 UniRef50_A1RZ40 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 ... 525 e-147 UniRef50_Q2YAA3 NADH-quinone oxidoreductase subunit C/D n=259 Ta... 522 e-147 UniRef50_B8I2P5 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 518 e-145 UniRef50_D2U4G0 NADH-quinone oxidoreductase chain C/D n=1 Tax=Ar... 515 e-144 UniRef50_C9LCY9 NADH dehydrogenase I, C/D subunit n=9 Tax=Bacter... 507 e-142 UniRef50_Q5LH50 NADH-quinone oxidoreductase subunit C/D n=34 Tax... 507 e-142 UniRef50_Q6MIR5 NADH-quinone oxidoreductase subunit C/D n=1 Tax=... 506 e-142 UniRef50_Q2C5T4 NADH dehydrogenase I, B/C/D subunits n=2 Tax=Pho... 506 e-141 UniRef50_Q24ST8 Formate hydrogenlyase subunit 5 n=2 Tax=Desulfit... 504 e-141 UniRef50_B2V8J2 NADH-quinone oxidoreductase subunit C/D n=15 Tax... 492 e-137 UniRef50_B2V8R2 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 491 e-137 UniRef50_D1Z1Z0 Putative [NiFe]-hydrogenase large subunit n=1 Ta... 487 e-136 UniRef50_B0R3U3 NADH dehydrogenase-like complex subunit CD n=16 ... 485 e-135 UniRef50_C6NSM4 NADH dehydrogenase I, B/C/D subunits n=1 Tax=Aci... 485 e-135 UniRef50_Q0W6T4 [NiFe]-hydrogenase, large subunit (EchE-like) n=... 481 e-134 UniRef50_A0RMD1 NADH-quinone oxidoreductase subunit C/D n=5 Tax=... 477 e-133 UniRef50_Q609T9 Hydrogenase subunit n=1 Tax=Methylococcus capsul... 467 e-130 UniRef50_A7I7D0 NADH dehydrogenase (Ubiquinone), 30 kDa subunit ... 462 e-128 UniRef50_A1AUU6 Ech hydrogenase subunit E n=3 Tax=Bacteria RepID... 453 e-126 UniRef50_Q1IS59 NADH-quinone oxidoreductase subunit D 1 n=2 Tax=... 451 e-125 UniRef50_Q0F384 Hydrogenase subunit n=1 Tax=Mariprofundus ferroo... 450 e-125 UniRef50_Q2K3U2 NADH-quinone oxidoreductase subunit D 2 n=7 Tax=... 449 e-124 UniRef50_B3DZF5 Formate hydrogenlyase subunit 5 n=8 Tax=Bacteria... 447 e-124 UniRef50_D2RET0 NADH-quinone oxidoreductase, B subunit n=1 Tax=A... 446 e-123 UniRef50_B5YKI5 NADH-quinone oxidoreductase subunit D 1 n=12 Tax... 445 e-123 UniRef50_C0Z770 NADH-quinone oxidoreductase chain D n=2 Tax=Baci... 443 e-122 UniRef50_B8J7E4 NADH-ubiquinone oxidoreductase chain 49kDa n=14 ... 443 e-122 UniRef50_B6AS24 Putative NADH-ubiquinone oxidoreductase, 49 kDa ... 442 e-122 UniRef50_A8A9X2 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 ... 440 e-122 UniRef50_Q979M3 NADH dehydrogenase I chain D n=6 Tax=Thermoplasm... 440 e-122 UniRef50_C0QBF7 HyfG n=3 Tax=Bacteria RepID=C0QBF7_DESAH 440 e-122 UniRef50_C6NX38 Ni,Fe-hydrogenase III large subunit n=1 Tax=Acid... 439 e-121 UniRef50_C7NUN7 NADH dehydrogenase (Quinone) n=1 Tax=Halorhabdus... 438 e-121 UniRef50_C6PUG2 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 438 e-121 UniRef50_B2HHH7 Formate hydrogenase HycE n=3 Tax=Actinomycetales... 437 e-121 UniRef50_A8VSQ7 Diguanylate cyclase/phosphodiesterase with PAS/P... 436 e-120 UniRef50_B9L172 NADH dehydrogenase I, D subunit n=1 Tax=Thermomi... 435 e-120 UniRef50_Q3ZW31 Hydrogenase, group 4, HycE subunit n=3 Tax=Dehal... 435 e-120 UniRef50_Q2S5J0 NADH-quinone oxidoreductase subunit D n=5 Tax=Ba... 435 e-120 UniRef50_C9LVK3 Proton-translocating NADH-quinone oxidoreductase... 435 e-120 UniRef50_B5YL34 NADH-quinone oxidoreductase subunit D 2 n=1 Tax=... 434 e-120 UniRef50_C5CEV3 NADH-ubiquinone oxidoreductase chain 49kDa n=1 T... 433 e-120 UniRef50_B1ZRT0 NADH-quinone oxidoreductase subunit D 1 n=16 Tax... 432 e-119 UniRef50_B3VS74 NADH-ubiquinone oxidoreductase chain 49kDa n=4 T... 432 e-119 UniRef50_Q2RJU4 NADH-quinone oxidoreductase subunit D n=94 Tax=F... 431 e-119 UniRef50_D1C6X3 NADH dehydrogenase I, D subunit n=1 Tax=Sphaerob... 431 e-119 UniRef50_A9B4Z7 NADH-quinone oxidoreductase subunit D 1 n=9 Tax=... 430 e-118 UniRef50_B6YU98 Membrane bound hydrogenase, NiFe-hydrogenase lar... 428 e-118 UniRef50_Q7NI12 NAD(P)H-quinone oxidoreductase subunit H 1 n=3 T... 427 e-118 UniRef50_Q64DY8 F420H2-quinone oxidoreductase 45 kD subunit n=8 ... 427 e-118 UniRef50_Q2FTW4 Membrane bound hydrogenase subunit mbhL n=3 Tax=... 427 e-118 UniRef50_A5UXK3 NADH-quinone oxidoreductase subunit D 1 n=20 Tax... 426 e-118 UniRef50_Q2WAW4 Ni,Fe-hydrogenase III large subunit n=11 Tax=Alp... 426 e-117 UniRef50_B5IS38 Respiratory-chain NADH dehydrogenase, 49 Kd subu... 425 e-117 UniRef50_C6A407 Membrane-bound hydrogenase MBH 1, subunit Mbh1L ... 425 e-117 UniRef50_O75306 NADH dehydrogenase [ubiquinone] iron-sulfur prot... 425 e-117 UniRef50_Q8U0Z6 Mbh12 membrane bound hydrogenase alpha (NADH deh... 425 e-117 UniRef50_C1XJB2 NADH dehydrogenase subunit D n=1 Tax=Meiothermus... 425 e-117 UniRef50_B9L625 NADH-ubiquinone oxidoreductase n=3 Tax=Epsilonpr... 424 e-117 UniRef50_B3E6C1 NADH-ubiquinone oxidoreductase chain 49kDa n=2 T... 424 e-117 UniRef50_C6A3Z3 Membrane-bound hydrogenase MBH 2, subunit Mbh2L ... 423 e-116 UniRef50_D2R5G7 NADH dehydrogenase (Quinone) n=2 Tax=Planctomyce... 422 e-116 UniRef50_C8XAS3 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 422 e-116 UniRef50_B1W516 NADH-quinone oxidoreductase subunit D 1 n=24 Tax... 422 e-116 UniRef50_B5Y915 EchE n=1 Tax=Coprothermobacter proteolyticus DSM... 421 e-116 UniRef50_Q6APF2 Related to hydrogenase, component E-formate hydr... 419 e-115 UniRef50_A3DKH4 NADH-ubiquinone oxidoreductase, chain 49kDa n=2 ... 419 e-115 UniRef50_P31895 Carbon monoxide-induced hydrogenase n=14 Tax=Bac... 419 e-115 UniRef50_Q4P4N9 Putative uncharacterized protein n=1 Tax=Ustilag... 418 e-115 UniRef50_C1D0H4 Putative NADH dehydrogenase (Quinone), subunit D... 418 e-115 UniRef50_Q6MDR3 NADH-quinone oxidoreductase subunit D n=2 Tax=Pa... 416 e-115 UniRef50_A5GBN1 Ech hydrogenase subunit E n=20 Tax=cellular orga... 416 e-114 UniRef50_Q1AVI6 NADH-quinone oxidoreductase subunit D n=1 Tax=Ru... 416 e-114 UniRef50_Q5P2H0 Subunit of formate hydrogenlyase-like membrane c... 416 e-114 UniRef50_Q2JFL7 NADH-quinone oxidoreductase subunit D n=81 Tax=B... 416 e-114 UniRef50_P56753 NAD(P)H-quinone oxidoreductase subunit H, chloro... 415 e-114 UniRef50_D2LH96 NADH-ubiquinone oxidoreductase chain 49kDa n=1 T... 415 e-114 UniRef50_B8DS05 NADH dehydrogenase (Quinone) n=7 Tax=Deltaproteo... 415 e-114 UniRef50_D2LAG1 NADH-ubiquinone oxidoreductase chain 49kDa n=1 T... 415 e-114 UniRef50_C1TPP0 Ni,Fe-hydrogenase III large subunit n=2 Tax=Syne... 414 e-114 UniRef50_D0L1P0 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 411 e-113 UniRef50_Q0W3I1 Ech hydrogenase, subunit E n=2 Tax=Euryarchaeota... 410 e-113 UniRef50_Q30PI1 NADH-quinone oxidoreductase subunit D n=45 Tax=E... 408 e-112 UniRef50_C7LSU9 NADH-ubiquinone oxidoreductase chain 49kDa n=1 T... 408 e-112 UniRef50_Q1QP34 NADH-quinone oxidoreductase subunit D 1 n=9 Tax=... 408 e-112 UniRef50_B4SJH6 NADH-quinone oxidoreductase subunit D 1 n=211 Ta... 408 e-112 UniRef50_UPI00016C492D NADH dehydrogenase subunit D n=1 Tax=Gemm... 407 e-112 UniRef50_B1ZUJ2 NADH-quinone oxidoreductase subunit D 2 n=5 Tax=... 406 e-112 UniRef50_A0B812 F420H2 dehydrogenase subunit C n=6 Tax=Archaea R... 404 e-111 UniRef50_D2L9H0 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 404 e-111 UniRef50_UPI0001C31275 NADH dehydrogenase I, D subunit n=1 Tax=C... 403 e-111 UniRef50_C7N626 Ech hydrogenase subunit E n=25 Tax=cellular orga... 401 e-110 UniRef50_C6HVM5 Putative hydrogenase-3 subunit (HycE) n=1 Tax=Le... 400 e-110 UniRef50_D2PDB9 NADH dehydrogenase (Ubiquinone) n=10 Tax=Sulfolo... 400 e-110 UniRef50_D1YVS8 Ech hydrogenase subunit E n=1 Tax=Methanocella p... 398 e-109 UniRef50_A9G9T3 NADH-quinone oxidoreductase subunit D 2 n=5 Tax=... 398 e-109 UniRef50_D2R4P3 NADH dehydrogenase (Quinone) n=3 Tax=Planctomyce... 396 e-108 UniRef50_A1KEQ8 Possible formate hydrogenase hycQ (FHL) n=14 Tax... 396 e-108 UniRef50_Q21TB4 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 ... 396 e-108 UniRef50_C9RKY1 NADH dehydrogenase (Quinone) n=1 Tax=Fibrobacter... 395 e-108 UniRef50_C7I0C0 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 393 e-107 UniRef50_C1XWY7 Ni,Fe-hydrogenase III large subunit n=1 Tax=Meio... 392 e-107 UniRef50_A5FKI7 NADH-quinone oxidoreductase subunit D n=17 Tax=B... 390 e-107 UniRef50_Q3JMD7 Hydrogenase subunit n=33 Tax=Burkholderia RepID=... 390 e-107 UniRef50_Q67P19 NADH-quinone oxidoreductase subunit D 1 n=1 Tax=... 390 e-107 UniRef50_A3ZL03 NADH dehydrogenase (Ubiquinone) n=1 Tax=Blastopi... 390 e-106 UniRef50_B1VSH7 NADH-quinone oxidoreductase subunit D 2 n=6 Tax=... 389 e-106 UniRef50_A7H9V5 NADH-quinone oxidoreductase subunit D 2 n=8 Tax=... 388 e-106 UniRef50_A6LMC4 NADH-quinone oxidoreductase subunit D n=14 Tax=c... 388 e-106 UniRef50_C6X0Z4 NADH-ubiquinone oxidoreductase chain D n=1 Tax=F... 387 e-106 UniRef50_B9L8U2 Ech Hydrogenase, Subunit n=3 Tax=Epsilonproteoba... 386 e-105 UniRef50_A1ALP2 NADH-quinone oxidoreductase subunit D n=1 Tax=Pe... 386 e-105 UniRef50_A1RZ50 NADH dehydrogenase (Ubiquinone) n=6 Tax=Archaea ... 385 e-105 UniRef50_C7DI97 NADH dehydrogenase (Quinone) n=1 Tax=Candidatus ... 383 e-104 UniRef50_A7C1S4 NADH-ubiquinone oxidoreductase subunit n=3 Tax=c... 382 e-104 UniRef50_A6DAC0 Carbon monoxide-induced hydrogenase, large subun... 381 e-104 UniRef50_B3ES55 NADH-quinone oxidoreductase subunit D n=19 Tax=B... 380 e-104 UniRef50_B8IYV5 NAD-dependent dehydrogenase subunit n=1 Tax=Desu... 379 e-103 UniRef50_B3T914 Putative Respiratory-chain NADH dehydrogenase, 4... 378 e-103 UniRef50_C2BU22 NADH dehydrogenase (Quinone) n=4 Tax=cellular or... 376 e-102 UniRef50_B3TC54 Putative Respiratory-chain NADH dehydrogenase, 4... 376 e-102 UniRef50_A4XCQ7 NADH-quinone oxidoreductase subunit D 2 n=22 Tax... 374 e-102 UniRef50_A9A347 NADH dehydrogenase (Quinone) n=3 Tax=Thaumarchae... 373 e-102 UniRef50_C1AB36 NADH-quinone oxidoreductase chain D n=1 Tax=Gemm... 371 e-101 UniRef50_Q58433 Uncharacterized protein MJ1027 n=12 Tax=Methanoc... 368 e-100 UniRef50_A9FF67 NAD-dependent dehydrogenase subunit n=1 Tax=Sora... 366 1e-99 UniRef50_A6UVJ6 Hydrogenase, component E-formate hydrogenlyase s... 364 5e-99 UniRef50_Q8TY43 Ni,Fe-hydrogenase III large subunit n=1 Tax=Meth... 362 2e-98 UniRef50_Q57935 Uncharacterized protein MJ0515 n=17 Tax=Euryarch... 361 6e-98 UniRef50_UPI0001C42022 energy-converting hydrogenase B subunit N... 360 9e-98 UniRef50_A6Q6W4 Ni-Fe hydrogenase, large subunit HycE n=3 Tax=Ep... 359 2e-97 UniRef50_A3DM94 Membrane bound protein complex subunit mbxL n=2 ... 358 3e-97 UniRef50_A8MBT0 NADH dehydrogenase (Quinone) n=1 Tax=Caldivirga ... 358 3e-97 UniRef50_Q2NED9 EhbN n=5 Tax=Methanobacteriaceae RepID=Q2NED9_METST 353 1e-95 UniRef50_A9BJL6 NADH dehydrogenase (Quinone) n=3 Tax=Thermotogac... 352 3e-95 UniRef50_A4WMP9 NADH dehydrogenase (Ubiquinone) n=5 Tax=Thermopr... 352 3e-95 UniRef50_B1YB08 NADH dehydrogenase (Quinone) n=5 Tax=Thermoprote... 351 3e-95 UniRef50_P15689 NADH-ubiquinone oxidoreductase 49 kDa subunit n=... 351 4e-95 UniRef50_A0LSU1 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 ... 350 7e-95 UniRef50_A3CUR5 NADH dehydrogenase (Ubiquinone) n=3 Tax=Methanom... 343 9e-93 UniRef50_A0L9R4 Membrane bound protein complex subunit mbxL n=1 ... 343 1e-92 UniRef50_UPI00019012E4 NADH dehydrogenase subunit D n=1 Tax=Myco... 331 5e-89 UniRef50_A5FW46 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 ... 323 1e-86 UniRef50_C6WGH3 NADH dehydrogenase (Quinone) n=1 Tax=Actinosynne... 319 1e-85 UniRef50_D1LDT9 NADH dehydrogenase subunit 7 (Fragment) n=2 Tax=... 319 2e-85 UniRef50_Q5DUX5 NADH-ubiquinone oxidoreductase 49 kDa subunit n=... 311 4e-83 UniRef50_B0SCU7 Metal (Ni/Fe) hydrogenase, large subunit n=2 Tax... 307 6e-82 UniRef50_Q0BPG8 Formate hydrogenlyase subunit 5 n=1 Tax=Granulib... 305 3e-81 UniRef50_C0SF51 NADH-ubiquinone oxidoreductase 49 kDa subunit n=... 299 1e-79 UniRef50_A5UWP3 NADH-ubiquinone oxidoreductase, chain 49kDa n=2 ... 294 9e-78 UniRef50_A9B5Q0 NADH-ubiquinone oxidoreductase chain 49kDa n=1 T... 290 1e-76 UniRef50_C7JEU8 NADH-ubiquinone oxidoreductase 49kDa subunit n=8... 284 6e-75 UniRef50_Q056K8 Metal (Ni/Fe) hydrogenase, large subunit n=4 Tax... 275 3e-72 UniRef50_UPI000186E11F NADH-ubiquinone oxidoreductase 49 kDa sub... 267 8e-70 UniRef50_D1HPS0 Whole genome shotgun sequence of line PN40024, s... 264 6e-69 UniRef50_D1Y9R2 Respiratory-chain NADH dehydrogenase, 49 Kd subu... 262 2e-68 UniRef50_B5ZIZ9 Ni Fe-hydrogenase III large subunit-like protein... 258 4e-67 UniRef50_Q978D6 Formate hydrogenlyase subunit 3 n=1 Tax=Thermopl... 241 5e-62 UniRef50_UPI000038DF6E Ni,Fe-hydrogenase III large subunit n=1 T... 232 3e-59 UniRef50_D2PJN4 Formate hydrogenlyase subunit 5 (HycE) n=10 Tax=... 228 3e-58 UniRef50_Q5FU77 Putative uncharacterized protein n=1 Tax=Glucono... 228 4e-58 UniRef50_Q1WLV6 Mitochondrial NADH:ubiquinone oxidoreductase 49k... 224 7e-57 UniRef50_C4PZT7 NADH-ubiquinone oxidoreductase fe-s protein 2 (N... 222 2e-56 UniRef50_Q6L0U1 Formate hydrogenlyase subunit 5 n=1 Tax=Picrophi... 219 3e-55 UniRef50_P19496 Coenzyme F420 hydrogenase subunit alpha n=2 Tax=... 203 2e-50 UniRef50_Q7G6A6 NAD, putative n=3 Tax=Magnoliophyta RepID=Q7G6A6... 201 8e-50 UniRef50_A5UMA1 Coenzyme F420-reducing hydrogenase, alpha subuni... 201 8e-50 UniRef50_B8GAR8 NADH-ubiquinone oxidoreductase chain 49kDa n=3 T... 200 1e-49 UniRef50_Q00390 Coenzyme F420 hydrogenase subunit alpha n=9 Tax=... 185 5e-45 UniRef50_P80489 Coenzyme F420 hydrogenase subunit alpha n=11 Tax... 183 1e-44 UniRef50_B6YTV8 Coenzyme F420 hydrogenase alpha subunit n=1 Tax=... 170 2e-40 UniRef50_UPI0001985C72 PREDICTED: similar to NADH dehydrogenase ... 170 2e-40 UniRef50_Q60338 Coenzyme F420 hydrogenase subunit alpha n=15 Tax... 163 1e-38 UniRef50_A6DBU3 Nickel-dependent hydrogenase, large subunit n=1 ... 161 6e-38 UniRef50_C5A2R8 Coenzyme F420 hydrogenase subunit alpha (FrhA) n... 161 8e-38 UniRef50_B5IEA3 Nickel-dependent hydrogenase superfamily n=3 Tax... 157 1e-36 UniRef50_Q3AU04 Hydrogenase/sulfur reductase, alpha subunit n=10... 156 2e-36 UniRef50_B9L8N1 Nickel-dependent hydrogenase, large subunit n=1 ... 156 2e-36 UniRef50_O66988 Hydrogenase large subunit n=1 Tax=Aquifex aeolic... 153 2e-35 UniRef50_Q1PWG9 NADH-quinone oxidoreductase n=1 Tax=Candidatus K... 151 6e-35 UniRef50_A3Q228 Nickel-dependent hydrogenase, large subunit n=7 ... 151 6e-35 UniRef50_B1L3Q0 Coenzyme F420-reducing hydrogenase, alpha subuni... 151 9e-35 UniRef50_Q2LYD7 Nickel-dependent hydrogenase n=1 Tax=Syntrophus ... 150 1e-34 UniRef50_B5YL31 NADH-quinone oxidoreductase n=1 Tax=Thermodesulf... 150 2e-34 UniRef50_A6Q3L3 Ni-Fe hydrogenase, large subunit HupV n=1 Tax=Ni... 147 9e-34 UniRef50_A5I2W3 Hydrogenase large subunit n=15 Tax=Clostridium R... 143 1e-32 UniRef50_Q00404 F420-non-reducing hydrogenase vhc subunit A n=10... 141 6e-32 UniRef50_A7NIW0 NADH-quinone oxidoreductase subunit C n=6 Tax=Ch... 141 6e-32 UniRef50_B3QUS1 NADH-quinone oxidoreductase n=1 Tax=Chloroherpet... 140 1e-31 UniRef50_B5YHQ8 Hydrogenase/sulfur reductase, alpha subunit n=2 ... 140 1e-31 UniRef50_C1F9E1 NADH-quinone oxidoreductase n=1 Tax=Acidobacteri... 140 2e-31 UniRef50_D1CCD3 NADH-quinone oxidoreductase n=1 Tax=Thermobaculu... 138 8e-31 UniRef50_Q2W3I6 NADH-quinone oxidoreductase subunit C n=6 Tax=ce... 137 1e-30 UniRef50_B6BMW7 Nickel-dependent hydrogenase, large subunit n=1 ... 136 2e-30 UniRef50_Q2S5J1 NADH-quinone oxidoreductase n=3 Tax=Rhodothermac... 135 4e-30 UniRef50_A9G9T0 NADH-quinone oxidoreductase n=1 Tax=Sorangium ce... 133 2e-29 UniRef50_B5YKI4 NADH-quinone oxidoreductase n=1 Tax=Thermodesulf... 133 2e-29 UniRef50_UPI0001C31274 NADH (or F420H2) dehydrogenase, subunit C... 133 2e-29 UniRef50_C0Z771 NADH-quinone oxidoreductase n=1 Tax=Brevibacillu... 131 5e-29 UniRef50_A8M620 NADH-quinone oxidoreductase subunit C n=14 Tax=A... 130 1e-28 UniRef50_Q11XR7 NADH-quinone oxidoreductase n=4 Tax=Sphingobacte... 130 2e-28 UniRef50_B2UPT7 NADH-quinone oxidoreductase n=1 Tax=Akkermansia ... 130 2e-28 UniRef50_A4ITI5 NADH-quinone oxidoreductase chain C n=73 Tax=Bac... 129 4e-28 UniRef50_B3DXN6 NADH-quinone oxidoreductase n=1 Tax=Methylacidip... 128 4e-28 UniRef50_C7NPL2 Nickel-dependent hydrogenase large subunit n=1 T... 128 6e-28 UniRef50_Q9KGW7 NADH dehydrogenase I subunit C n=3 Tax=cellular ... 128 6e-28 UniRef50_Q28T74 NADH-quinone oxidoreductase subunit C n=7 Tax=Al... 128 9e-28 UniRef50_UPI0001693946 NADH dehydrogenase subunit C n=1 Tax=Paen... 127 9e-28 UniRef50_B4UIA3 NADH-quinone oxidoreductase n=4 Tax=Anaeromyxoba... 127 9e-28 UniRef50_Q0CI54 NADH-ubiquinone oxidoreductase 30.4 kDa subunit,... 127 1e-27 UniRef50_A2BJ95 NAD(P)H-quinone oxidoreductase subunit J n=1 Tax... 126 3e-27 UniRef50_D1RAG7 NADH-quinone oxidoreductase n=2 Tax=Parachlamydi... 126 3e-27 UniRef50_A8LIT7 NADH-quinone oxidoreductase subunit C n=51 Tax=A... 125 3e-27 UniRef50_P23710 NADH-ubiquinone oxidoreductase 30.4 kDa subunit,... 125 5e-27 UniRef50_C6A4M9 NiFe hydrogenase II, catalytic subunit alpha n=4... 125 6e-27 UniRef50_A9MAI1 NADH-quinone oxidoreductase subunit C n=86 Tax=c... 125 6e-27 UniRef50_Q02CU1 NADH-quinone oxidoreductase n=1 Tax=Candidatus S... 124 7e-27 Sequences not found previously or not previously below threshold: UniRef50_P21301 NADH-ubiquinone oxidoreductase 49 kDa subunit ho... 193 1e-47 UniRef50_D1ICJ9 Whole genome shotgun sequence of line PN40024, s... 182 3e-44 UniRef50_B5I9E7 Ni Fe-hydrogenase III large subunit-like protein... 164 8e-39 UniRef50_C1A0H7 Putative NiFe hydrogenase alpha subunit n=2 Tax=... 143 2e-32 UniRef50_Q1AZS0 Ni Fe-hydrogenase III large subunit-like protein... 136 2e-30 UniRef50_C0QP83 Nickel-dependent hydrogenase, large subunit n=2 ... 136 2e-30 UniRef50_A0L610 Nickel-dependent hydrogenase, large subunit n=1 ... 134 7e-30 UniRef50_B9S1B1 NADH-plastoquinone oxidoreductase 49 kD subunit,... 134 1e-29 UniRef50_A8UU10 Nickel-dependent hydrogenase, large subunit n=1 ... 131 6e-29 UniRef50_Q30QL7 Nickel-dependent hydrogenase, large subunit n=1 ... 130 1e-28 UniRef50_Q466A9 F420H2 dehydrogenase subunit C n=4 Tax=Methanosa... 128 6e-28 UniRef50_C7NU24 Nickel-dependent hydrogenase large subunit n=1 T... 127 1e-27 UniRef50_B5EQ52 Nickel-dependent hydrogenase large subunit n=10 ... 127 1e-27 UniRef50_B8HJR0 Coenzyme F420 hydrogenase n=14 Tax=Bacteria RepI... 126 2e-27 UniRef50_Q2J4F0 Nickel-dependent hydrogenase, large subunit n=4 ... 126 3e-27 UniRef50_Q50783 F420-non-reducing hydrogenase subunit A n=6 Tax=... 126 3e-27 >UniRef50_P16431 Formate hydrogenlyase subunit 5 n=104 Tax=Bacteria RepID=HYCE_ECOLI Length = 569 Score = 767 bits (1982), Expect = 0.0, Method: Composition-based stats. Identities = 569/569 (100%), Positives = 569/569 (100%) Query: 1 MSEEKLGQHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVL 60 MSEEKLGQHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVL Sbjct: 1 MSEEKLGQHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVL 60 Query: 61 FGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRD 120 FGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRD Sbjct: 61 FGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRD 120 Query: 121 MYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNN 180 MYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNN Sbjct: 121 MYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNN 180 Query: 181 VVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 240 VVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV Sbjct: 181 VVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 240 Query: 241 CGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG 300 CGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG Sbjct: 241 CGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG 300 Query: 301 FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELV 360 FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELV Sbjct: 301 FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELV 360 Query: 361 DVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVH 420 DVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVH Sbjct: 361 DVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVH 420 Query: 421 SEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGD 480 SEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGD Sbjct: 421 SEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGD 480 Query: 481 DIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTV 540 DIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTV Sbjct: 481 DIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTV 540 Query: 541 VDVRKKKSKVVPYKELERYSIERKNSPLK 569 VDVRKKKSKVVPYKELERYSIERKNSPLK Sbjct: 541 VDVRKKKSKVVPYKELERYSIERKNSPLK 569 >UniRef50_P77329 Hydrogenase-4 component G n=130 Tax=Bacteria RepID=HYFG_ECOLI Length = 555 Score = 677 bits (1747), Expect = 0.0, Method: Composition-based stats. Identities = 400/568 (70%), Positives = 468/568 (82%), Gaps = 17/568 (2%) Query: 2 SEEKLGQHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVLF 61 S G+ LAAL FPG VLD QT +Q+T+TVK+N LP+VV++LYY+ GWL VLF Sbjct: 5 SSSNRGEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLF 64 Query: 62 GNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDM 121 GNDER LNGHYAVYY LSME KCWI V+ VDA+ E+PSVTPRVPAAVWGERE+RDM Sbjct: 65 GNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDM 124 Query: 122 YGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNV 181 YGLIPVGLPD+RRLVLPDDWP++++PLRKD+MDYR RP PTTD+ETY FINE G+ V Sbjct: 125 YGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINE-GNSDARV 183 Query: 182 VPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 241 +P+GPLH+TSDEPGHFRLFVDGE I+DADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC Sbjct: 184 IPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 243 Query: 242 GICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGF 301 GICGFAHS AYT SVENA+GI+VP+RA IR+ILLEVERLHSHLLNLGL+CHF GFD+GF Sbjct: 244 GICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGF 303 Query: 302 MQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVD 361 MQFFRVRE SM MAE+L G+RKTYGLNLIGG+RRD+LK+ +QT +L ++MR +V ELV+ Sbjct: 304 MQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVE 363 Query: 362 VLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHS 421 +LL+TPNMEQRT GIG LD +IA RD R DHP+ YG +P + + Sbjct: 364 MLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKTLFT 407 Query: 422 EQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDD 481 G DV SR+ VR+ E + +L M+++ LDN+P PL+ EGF+Y PH FALGF EAPRG+D Sbjct: 408 FTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGED 467 Query: 482 IHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVV 541 +HWSM GDNQKL+RWRCRAATYANWP LRYMLRGNTVSDAPLIIGSLDPCYSCTDR+T+V Sbjct: 468 VHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTLV 527 Query: 542 DVRKKKSKVVPYKELERYSIERKNSPLK 569 DVRK++SK VPYKE+ERY I+R SPLK Sbjct: 528 DVRKRQSKTVPYKEIERYGIDRNRSPLK 555 >UniRef50_A1RWL3 NADH dehydrogenase (Ubiquinone), 30 kDa subunit n=2 Tax=Archaea RepID=A1RWL3_THEPD Length = 567 Score = 655 bits (1690), Expect = 0.0, Method: Composition-based stats. Identities = 269/559 (48%), Positives = 381/559 (68%), Gaps = 7/559 (1%) Query: 8 QHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVLFGNDERK 67 + + + G++L DQL + V+ LPEV ++YY+ GG+LS + G+DER Sbjct: 6 ERLEEKIRKEIGGLLLGVEKPYPDQLYLYVERTKLPEVCSYVYYELGGFLSTMAGSDERS 65 Query: 68 LNGHYAVYYVLSMEKG----TKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYG 123 L+G Y +YYV S+E+G K W+ V + + ++ SVTP++PAA W EREVRD+ G Sbjct: 66 LHGAYRLYYVFSIEEGYEDGKKPWVVVVTNIPPHDTKFSSVTPKIPAASWYEREVRDLLG 125 Query: 124 LIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVP 183 L+P PD RRLVLPDDWP+ ++PLRK+ + P + A EF + + VP Sbjct: 126 LVPENHPDPRRLVLPDDWPEGVHPLRKE---FTYTERPPSVARKCEFRPSVEGEGIMQVP 182 Query: 184 IGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGI 243 IGP+H +DEPG FR+F+DGE ++D DYR+FYVHRG+EKLAE+R+ YN+V F+++R+CGI Sbjct: 183 IGPVHAVADEPGQFRVFLDGEKVVDVDYRMFYVHRGIEKLAESRLTYNQVPFIAERICGI 242 Query: 244 CGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQ 303 CG+AHS AY +VE A+GI+VPERA IR ++LEVERLHSHLLNLGLACH GFD GFM Sbjct: 243 CGYAHSCAYCQAVEQALGIEVPERALYIRTLMLEVERLHSHLLNLGLACHLAGFDWGFMA 302 Query: 304 FFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVL 363 FF+ RE M MAE+LTG RKTYG+N++GG+RRD+ +D + ++ +++ +E + ++D + Sbjct: 303 FFKAREKVMYMAELLTGGRKTYGMNVVGGVRRDITEDRAKKALEILKEVEKEYKAVLDAV 362 Query: 364 LSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQ 423 LST + R +G L ++AR S VGP+ R S RDTR DHP+ Y + +V Sbjct: 363 LSTSTLVSRAKDVGVLPRDVARKVSVVGPVARGSSIKRDTRKDHPYAAYSEVDFKVPVHS 422 Query: 424 GCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIH 483 DV++RL VR E + +++I L+N+PGGP+ E Y P+ LG+ EAPRG+D+H Sbjct: 423 EGDVLARLSVRAEETFETISIIRQVLENMPGGPIQAEVKEYRPYARGLGYVEAPRGEDVH 482 Query: 484 WSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVVDV 543 + +TG + K+YRWR RA+TY NWP + YM RG T++D PLIIGS+DPCYSCT+R+ VVDV Sbjct: 483 FVITGPHSKVYRWRVRASTYNNWPAIPYMCRGYTLADLPLIIGSIDPCYSCTERVIVVDV 542 Query: 544 RKKKSKVVPYKELERYSIE 562 + +++V PY+ L S + Sbjct: 543 KSGRTRVFPYEYLVSLSRK 561 >UniRef50_B6YTW8 Hydrogenase 4, component G or formate hydrogen lyase, subunit 5 n=5 Tax=Thermococcaceae RepID=B6YTW8_THEON Length = 584 Score = 635 bits (1639), Expect = e-180, Method: Composition-based stats. Identities = 247/565 (43%), Positives = 347/565 (61%), Gaps = 10/565 (1%) Query: 5 KLGQHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQG---GWLSVLF 61 K+ + YL + E F + D +Q +TV+ LPE+V + LS + Sbjct: 24 KVTREYLDEIIEKFGEKIRDVKQAAYNQWIITVEREDLPEIVLYFLNHPEWKETQLSSMV 83 Query: 62 GNDERKLNGHYAVYYVLSME-KGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRD 120 DER LNG +++ Y LS+ K ++ VR + + P + S+ + A W ERE + Sbjct: 84 ATDERPLNGKFSITYWLSVNGKAGDFYLGVRAYLPEDDPRFTSIAAKHRGANWYEREAME 143 Query: 121 MYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNN 180 M GL G PD RRLVLPDDWP +YPLRKD + Y + D+ Sbjct: 144 MLGLTAEGHPDPRRLVLPDDWPSCVYPLRKDFHYSN----SPPGEKFYPYKEPKKDEI-- 197 Query: 181 VVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 240 VVP GP HV +E HFRL+V GE I D DYR FY HRG+EK++E R+ Y++V F+++R+ Sbjct: 198 VVPYGPYHVALEEAAHFRLYVKGETITDVDYRGFYAHRGIEKISEGRLTYDQVCFIAERI 257 Query: 241 CGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG 300 CGICG HSTAY +VENA GI+VPERA+ IR I+LE+ERLHSHLLN G+ H G+D G Sbjct: 258 CGICGCTHSTAYCQAVENAGGIEVPERAEYIRTIVLEIERLHSHLLNFGIVSHLVGYDYG 317 Query: 301 FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELV 360 FM+ +R+RE M +AE LTG RKTYG+ L+GG+RRDLL+ + ++++ E ELV Sbjct: 318 FMKAWRIREHVMWLAERLTGNRKTYGMLLVGGVRRDLLEYRKSLIEDVLKKIKTEFSELV 377 Query: 361 DVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVH 420 D +ST +R G+G L ++A+++ GP+ R SG D R DHP+ Y L +V Sbjct: 378 DEAISTSTFVKRLEGVGVLPYKVAKEWDVDGPLGRGSGRDFDVRRDHPYAAYKYLDFKVP 437 Query: 421 SEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGD 480 + DV++R VRI EV+ ++ +I+ LD +PGG ++ E P+ A+G EAPRG+ Sbjct: 438 VYKEGDVLARALVRIEEVFESIWIIEQALDQMPGGDILAEYKEIPPYSEAIGMTEAPRGE 497 Query: 481 DIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTV 540 +IH+ MTG+N K+YR+R RAATY N P + M+RG T++DAPLI+ S+DPCYSCT+R+ V Sbjct: 498 NIHYVMTGENNKVYRYRARAATYNNLPAVPDMMRGYTIADAPLIVASIDPCYSCTERVQV 557 Query: 541 VDVRKKKSKVVPYKELERYSIERKN 565 VDV K +V+ E + SI+ Sbjct: 558 VDVESGKVRVLSETEFNKLSIKASR 582 >UniRef50_C5A3D4 Formate hydrogenlyase I subunit F (Mhy1F) n=2 Tax=Thermococcus RepID=C5A3D4_THEGJ Length = 601 Score = 612 bits (1578), Expect = e-173, Method: Composition-based stats. Identities = 233/566 (41%), Positives = 345/566 (60%), Gaps = 17/566 (3%) Query: 11 LAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGG---WLSVLFGNDERK 67 L EAF + + T Q + LP+ V + + LS G DER Sbjct: 40 LKEFYEAFKEHIRECKRMTYGQYMFVIDREVLPDAVLWWHNHPEFKETHLSTAVGTDERP 99 Query: 68 LNGHYAVYYVLSME-----KGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMY 122 LNG + L+++ W+ ++ + A+ P +PSV ++PAA+W EREV+D+ Sbjct: 100 LNGKFVYMPFLNVQVEPQNMDENYWVFLKAYMPADDPSFPSVAAKLPAALWIEREVKDLL 159 Query: 123 GLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVV 182 G PVG PD RRL+LP+DWP+ +YPLRKD MDYR P E E + +V Sbjct: 160 GFNPVGHPDPRRLILPEDWPEGVYPLRKD-MDYRHSPMAEVKTEYRE-----TPEGTTLV 213 Query: 183 PIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCG 242 P+GP+H +EP HFRLFV GE I+D DYR FY HRG+EK E R+ YN+V FL++R+CG Sbjct: 214 PMGPVHAGIEEPAHFRLFVKGEEIVDVDYRGFYSHRGIEKTGEGRLTYNQVLFLAERICG 273 Query: 243 ICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFM 302 ICG+ HS +Y +VE + +P+RA+ IR ++LE+ER+H+HLL +G+A H G+D+GFM Sbjct: 274 ICGYQHSVSYAMAVERLADVDIPDRARYIRTLMLELERIHNHLLWVGIAAHLVGYDTGFM 333 Query: 303 QFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDV 362 +R+RE M + E LTG RK YG+N++GG+RRD+L + ++ +Q+R E ++ +D+ Sbjct: 334 HAWRIREPVMWLVERLTGNRKQYGMNIVGGVRRDILDYRKEEILKVVKQIREETKKFLDI 393 Query: 363 LLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPF---VGYGLLPMEV 419 L+T +R G+G L ++A+ +S +GP RASG DTR D + Y + +V Sbjct: 394 ALNTNTFIKRAEGVGILPYKVAKAYSVLGPTARASGRRIDTRLDQATKTAMAYNEVDFKV 453 Query: 420 HSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRG 479 + DV++R+ VR++E++ +L +++ +D +PGG +MV + ALGF EA RG Sbjct: 454 PVYKEGDVLARVLVRMDELFESLWIVEQLIDQMPGGDIMVPIGDLPEYEEALGFTEAHRG 513 Query: 480 DDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMT 539 + +H+ MTG+ K+YRW+ RA TY N P + ML+G V+DAPLII S+DPCYSCT+R+ Sbjct: 514 EVVHYVMTGEKNKVYRWKVRAPTYNNLPAVPEMLKGYHVADAPLIIASIDPCYSCTERVQ 573 Query: 540 VVDVRKKKSKVVPYKELERYSIERKN 565 VDV K KV+ E SI+ + Sbjct: 574 FVDVETGKVKVLTEAEFNELSIKYRG 599 >UniRef50_B6YWP8 Hydrogenase 4, subunit 5 n=1 Tax=Thermococcus onnurineus NA1 RepID=B6YWP8_THEON Length = 540 Score = 609 bits (1572), Expect = e-173, Method: Composition-based stats. Identities = 223/519 (42%), Positives = 329/519 (63%), Gaps = 8/519 (1%) Query: 30 KDQLTV-TVKVNYLPEVVEFLYYKQGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWI 88 D++TV V + + E+ L+ ++G + S G DER +NG +A+Y++ + + + ++ Sbjct: 15 NDKMTVAEVGASNIREIARALF-ERGYYYSSGMGVDERPINGRFAMYHIFNCDTEGR-YV 72 Query: 89 TVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPL 148 +++ PE PS+TP + A W ERE DM G++ G P RL+LPDDWP+ +YPL Sbjct: 73 VLKITSPEGSPEVPSITPVIKGAEWSEREAMDMLGIVFSGHPKPERLILPDDWPEGVYPL 132 Query: 149 RKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIID 208 RKD ++ P + E ++ +P+GP H + EP +F L+V G+ ++D Sbjct: 133 RKDFPYNKKLPPSKPIEKEREHKKDV-----MEIPLGPYHPSLHEPEYFELYVKGDKVVD 187 Query: 209 ADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERA 268 A+YR F++HRGMEKLAE+RM N++ FL++R+CGICG HS AY +VE+A GI VPERA Sbjct: 188 AEYRGFHIHRGMEKLAESRMTINQIPFLAERICGICGCTHSAAYCQAVEDAAGIYVPERA 247 Query: 269 QMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLN 328 Q IR I+LEVER+HSHLL G+ CH GFDSGFM +R RE M +AE++TG RKTYG+N Sbjct: 248 QYIRTIMLEVERIHSHLLWFGVVCHLLGFDSGFMHIWRAREYIMDIAELITGNRKTYGIN 307 Query: 329 LIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFS 388 ++GG+RRD+ +D +T +L + +E +E++D + + +R G+G L + AR+ Sbjct: 308 IVGGVRRDITEDKKEKTLKLLDMVEKESREVLDNIAEMKELRERMEGVGVLPKKEAREIG 367 Query: 389 NVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYG 448 VGPM R+SG D R DHP+ Y L +V + DV +R VR E++ + NMI Sbjct: 368 VVGPMARSSGIDTDVRRDHPYAAYKDLDFKVPVYKEGDVFARFLVRYEEIFESFNMIRQA 427 Query: 449 LDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPT 508 L+N+P G L+ + + P + +G EAPRG++IH +T +YRW RAATY N P Sbjct: 428 LENMPPGELINDEYEIPPFKLGIGVTEAPRGENIHAVITWGENMIYRWHPRAATYNNLPA 487 Query: 509 LRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVVDVRKKK 547 + MLRGN V+DAPLII S+DPC+SCTD ++++D K Sbjct: 488 VPIMLRGNDVADAPLIIASIDPCFSCTDHVSIIDSESGK 526 >UniRef50_Q2RXM4 NADH-ubiquinone oxidoreductase n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RXM4_RHORT Length = 561 Score = 603 bits (1556), Expect = e-171, Method: Composition-based stats. Identities = 215/555 (38%), Positives = 324/555 (58%), Gaps = 4/555 (0%) Query: 8 QHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVLFGNDERK 67 Q L +N FPG V D+L + ++ + +++ G L D Sbjct: 5 QTILDDINARFPGCVTRGLAPQPDRLYLRTTTEHIRTLAAYVFNDLKGRLVTGVCTDMGP 64 Query: 68 LNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPV 127 + G Y + Y S++ +T+ D P+ P++T +P A W ERE DM G++ Sbjct: 65 VTGEYDIIYAFSLD-AEGILLTLTEPTDPKDPKVPTLTDLIPGADWHERENYDMLGVVAE 123 Query: 128 GLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDK-KNNVVPIGP 186 G P+ RRL+L +DWP++L+P+RKD P + T + LG++ K ++ +GP Sbjct: 124 GHPNPRRLLLSEDWPEDLFPMRKDFPH--DFKPPKAEKITTPLRDPLGNESKATIISVGP 181 Query: 187 LHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGF 246 T DEP +FRLF +GE II +DYR F+ HRG+EKL++T + YN+V F+++RVCGICGF Sbjct: 182 FFPTLDEPAYFRLFCEGEEIIGSDYRGFFSHRGIEKLSDTVLDYNQVPFMAERVCGICGF 241 Query: 247 AHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFR 306 HS Y +VE+A GI++P RA+ IR+I++E+ERLHSHLL LGLA H+ GFD+ MQ +R Sbjct: 242 VHSACYCMAVEDAAGIEIPPRAKYIRSIMMELERLHSHLLWLGLAGHYLGFDTVLMQSWR 301 Query: 307 VRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLST 366 +RE M + E +TG RKTYG+NL+GG+RRDL + ++ E +EL+ + Sbjct: 302 IREPIMWLVEEITGNRKTYGMNLVGGVRRDLDSAICDKIMAAVTKIGIECEELISAVAGD 361 Query: 367 PNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCD 426 +++ R V +G L E AR VGP RASG D RAD+P+ + L + +G D Sbjct: 362 ESLKMRMVKVGVLSHEDARGICVVGPTARASGVHIDARADYPYAAFPDLDFKPSFHEGGD 421 Query: 427 VISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSM 486 + +R VR++EV +++++I + LP G +M R G AEAPRG+ +H+ Sbjct: 422 IWARTLVRVDEVRSSVDLIKQMITKLPEGEIMAGFGPIPAWREGYGIAEAPRGECVHYVQ 481 Query: 487 TGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVVDVRKK 546 TG + + YRWR RAATY + ML+G ++ D P+IIGS+DPC+SCT+R+ VD + K Sbjct: 482 TGKDNRPYRWRVRAATYPQLQAVPLMLKGMSIGDFPIIIGSIDPCFSCTERVLTVDTKSK 541 Query: 547 KSKVVPYKELERYSI 561 + K+L + Sbjct: 542 AIRTYTEKDLLALTR 556 >UniRef50_B7R5K6 Hydrogenase-4 component G n=1 Tax=Thermococcus sp. AM4 RepID=B7R5K6_9EURY Length = 545 Score = 594 bits (1532), Expect = e-168, Method: Composition-based stats. Identities = 226/519 (43%), Positives = 327/519 (63%), Gaps = 8/519 (1%) Query: 30 KDQLTV-TVKVNYLPEVVEFLYYKQGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWI 88 D++TV V + E+ + L+ G + S G DER +N +A+Y+V + E + + Sbjct: 15 DDRVTVAEVSPERVREIAKGLF-NAGCYYSCGMGVDERPVNMRFAMYHVFNCE-AERRHV 72 Query: 89 TVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPL 148 +++ N+ PS+TP + A W ERE DM G+I G P+ RL+LP+DWP+ +YPL Sbjct: 73 ILKLTTPTNELTLPSITPVIEGASWSEREAMDMLGIIFEGHPEPERLILPEDWPEGVYPL 132 Query: 149 RKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIID 208 RKD ++ P + ++ + VP+GP H T EP +F L+V G+ I+D Sbjct: 133 RKDFPYNKKLPPAKPKEGRKKPRPDIIE-----VPLGPYHPTLHEPEYFELYVKGDKIVD 187 Query: 209 ADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERA 268 A YR F++HRGMEKLAE+RM N+V FL++R+CGICG HSTAY +VE+A I VPERA Sbjct: 188 AKYRGFHIHRGMEKLAESRMTLNQVPFLAERICGICGCTHSTAYCQAVEDATNIYVPERA 247 Query: 269 QMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLN 328 + IR I+LEVERLHSHLL G+ACH GFDSGFM +R RE M +AE++TG RKTYG+N Sbjct: 248 RYIRTIMLEVERLHSHLLWFGVACHLLGFDSGFMHLWRAREYIMDIAELITGNRKTYGIN 307 Query: 329 LIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFS 388 LIGG+RRD+ ++ + +L ++ +E++D ++ +++R +G L + R+ Sbjct: 308 LIGGVRRDIPEEKKRKVLELLDLAEKDSREILDNVVKMGELKERMENVGVLPKKKGREIG 367 Query: 389 NVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYG 448 VGP+ RASG D R DHP+ YG L EV +G DV+SR VR +E + + +MI Sbjct: 368 VVGPVARASGIDTDVRRDHPYAAYGDLDFEVPVYKGEDVLSRFLVRYDETFQSFSMIRQA 427 Query: 449 LDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPT 508 LDN+P G L+ E + + LG EAPRG+D+H +T K+YRW RA+TY N P Sbjct: 428 LDNMPEGELINEDYEIPGFKLGLGVTEAPRGEDVHVVITWGENKVYRWHPRASTYNNLPA 487 Query: 509 LRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVVDVRKKK 547 + MLRGN ++DAP+II S+DPC+SCTD ++++D + Sbjct: 488 VPVMLRGNDIADAPIIIASIDPCFSCTDHVSIIDSENGR 526 >UniRef50_B5YKR2 Hydrogenase-4 component G n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKR2_THEYD Length = 541 Score = 593 bits (1530), Expect = e-168, Method: Composition-based stats. Identities = 209/536 (38%), Positives = 323/536 (60%), Gaps = 7/536 (1%) Query: 22 VLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVLFGNDERKLNGHYAVYYVLSME 81 + D T + L V K + + EV + L + G + L D + Y S+ Sbjct: 11 ITDKVETTDENLIVYSKPSQIKEVAKLLVMQ-GARFAHLTAIDFINQKNQIELNYFFSLI 69 Query: 82 KGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDW 141 + + V++ ++A++ S++ +PA +W ERE D++G+ G PD RRLVLPD+W Sbjct: 70 DDS-MNVIVKIPLEASELSISSISEIIPAVIWSERECNDLFGINFEGHPDPRRLVLPDNW 128 Query: 142 PDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFV 201 P E++PLRK+ + P + ++ V+PIGP + + +EP +FRL V Sbjct: 129 PQEVHPLRKNFSYNSKPPESKQ-----PAPLKKPEEGKTVIPIGPFYPSLEEPAYFRLIV 183 Query: 202 DGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMG 261 DGE I D DYR FYVHRG+EKLAE+ + Y ++ FL++R+CGICGF HS AY +VE A G Sbjct: 184 DGEEIADFDYRGFYVHRGIEKLAESVLNYQQIPFLAERICGICGFVHSCAYCQAVEKAAG 243 Query: 262 IQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGA 321 I++P RA+ IR++ LE+ERLHSHLL +GLA H GFD+ FMQ +R+RE M + EI+TG Sbjct: 244 IEIPLRAKFIRSLFLELERLHSHLLWVGLAAHIVGFDTLFMQAWRIREPVMYICEIITGN 303 Query: 322 RKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDP 381 RKTYG+N++GG+ D+ + ++ Q+ +EV+EL +++L ++ R +G L Sbjct: 304 RKTYGINIVGGVTIDVHNQHLKDIDKVISQIEKEVRELREIILDDEVIQLRFKNVGVLKY 363 Query: 382 EIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTA 441 + A+ + GP+ R SG D R + P+ Y +L + + + DV +R VR+ E+ + Sbjct: 364 DDAKKYCVCGPVARGSGINIDMRTNFPYAAYPMLNIRIPLNKSGDVWARTIVRLEEILIS 423 Query: 442 LNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAA 501 +N+I L+N+P GP ++ P + A+ + EAPRG H+ MTG + YRW RA Sbjct: 424 INIIRQILENIPEGPTSIKISKIEPWKEAVSYIEAPRGQLFHYVMTGPEGRPYRWSVRAP 483 Query: 502 TYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVVDVRKKKSKVVPYKELE 557 +Y N+ L ML+G +++DAPLIIGS+DPC+SCT+R +VD++ KV +EL+ Sbjct: 484 SYQNYQALSVMLKGASIADAPLIIGSIDPCFSCTERYEIVDLKTNSIKVYTAEELK 539 >UniRef50_Q1PZL4 Similar to membrane-bound [NiFe]-hydrogenase-3, large subunit (Chain E) n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZL4_9BACT Length = 531 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 186/531 (35%), Positives = 303/531 (57%), Gaps = 7/531 (1%) Query: 7 GQHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVLFGNDER 66 Q ++ L+ F G + ++++ V+ K L V ++ LS + NDER Sbjct: 6 RQLHIDKLSGQFKGNITISRSFLENEIYVSTKKENLLNVCLYIKDIFNAVLSSMICNDER 65 Query: 67 KLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIP 126 L+ H+ +YYV S+++ ++ V + V +PE+PS+TP++PAA W ERE++DM+GLIP Sbjct: 66 TLDKHFKIYYVFSLQR-EDTFLIVTIPVSEQQPEFPSITPQIPAAHWYEREIKDMFGLIP 124 Query: 127 VGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGP 186 VG P LVL ++P+ YPLRKD + F G+ +P+GP Sbjct: 125 VGHPRPETLVLHGNFPENTYPLRKDFDIQTR---IPHLESKLPFFRVEGEGVFE-IPVGP 180 Query: 187 LHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGF 246 +H EPGHFR G++I D +LF+ H+G EK+ ET M Y + FL++R+CG+C Sbjct: 181 IHAGVIEPGHFRFSAVGDSIFYLDAKLFFTHKGTEKIFET-MPYTKALFLAERICGVCAA 239 Query: 247 AHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFR 306 +H+T Y ++E I++P RA+ IR I++E+ER+++H+ ++G C T F G FR Sbjct: 240 SHATGYCQAIEKVAEIEIPPRARFIRTIVMELERIYNHIGDVGNICAGTAFLLGIAHGFR 299 Query: 307 VRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLST 366 +RE ++ E +TG R G+ IGG+R D+ D L ++++ ++L ++ + Sbjct: 300 IREYLQQLNETITGNRYLRGMLAIGGVRFDINDDLEKHILSLLNHVKKDFKDLTKMMFKS 359 Query: 367 PNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQ-GC 425 ++ R GRL EIAR VG RASG +DTR +HP+ Y + ++ Sbjct: 360 SSLLDRLETTGRLSEEIARGLGVVGVAARASGIVQDTRVNHPYAAYEEVDFDIPVFHYEG 419 Query: 426 DVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWS 485 DV++R++VR++EVY ++ +I+ + + GPL P++ AL + E+PRG++I+W Sbjct: 420 DVLARIRVRVDEVYQSIYIIEQCFEKMRPGPLKTPIKELPPYKQALSYVESPRGENIYWI 479 Query: 486 MTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 MT KL+R++ R+ ++ NWP + + + GN V D PLI S + CYSCTD Sbjct: 480 MTAPGNKLFRYKVRSPSFCNWPAIPFAVPGNIVPDFPLINKSFELCYSCTD 530 >UniRef50_A1ASR5 NADH dehydrogenase (Ubiquinone), 30 kDa subunit n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1ASR5_PELPD Length = 557 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 210/556 (37%), Positives = 317/556 (57%), Gaps = 5/556 (0%) Query: 11 LAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVLFGNDERKLNG 70 L L + F + +L V + + + ++++ + G+D+R +G Sbjct: 6 LQQLKDKFGSAIQQADVVNDMRLLVYIDPASVKPICQYIFRDMDARYVISIGSDDRPYSG 65 Query: 71 HYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLP 130 + V++ + +K K ++ ++ P S++ +PAA W ERE++D+ G+ PVG P Sbjct: 66 KFLVFHQFAFDK-EKILFSIICQLPGENPRIDSISGIIPAANWAERELKDLLGIEPVGHP 124 Query: 131 DERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVT 190 +RLVLPD WPD +PLRKD + P E EF + VP GP H T Sbjct: 125 YPKRLVLPDAWPDGHHPLRKD---FAWNKIPEGYDEEREFDFDETPPGCTAVPFGPFHPT 181 Query: 191 SDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHST 250 DEP HFRL+VDGE + +YR F VHRG+EKL+E+ +GYN+V +++R+CGICG HS Sbjct: 182 LDEPEHFRLYVDGEFVRGCEYRGFMVHRGIEKLSESVLGYNDVPMMAERICGICGCVHSL 241 Query: 251 AYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRET 310 A+ +VEN G+ VP RA+ IR I+LE+ERLHSH + +GLACH GFD+ FMQ +R+RE Sbjct: 242 AFCQAVENGAGVIVPPRAEFIRTIMLEIERLHSHPMWVGLACHLVGFDTLFMQAWRIREP 301 Query: 311 SMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNME 370 M +AE +TG RKTYGL +IGG+R D + + +TR + ++ E +++V + N+ Sbjct: 302 IMWLAEKITGNRKTYGLGIIGGVRWDFTPELIAETRAVLDKLESEWRQVVAAVSKDKNIM 361 Query: 371 QRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISR 430 RT G+G D + ++ VGP+ R G D R DHP+ Y + +V + DV R Sbjct: 362 ARTSGVGMADKALCKEMGLVGPVARGGGVDIDARRDHPYAAYDRVDFKVITHNTADVWGR 421 Query: 431 LKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHR-FALGFAEAPRGDDIHWSMTGD 489 + VR+ EV+ ++N+I D +P GPL+ + T +P EAPRG+ H+++TGD Sbjct: 422 VVVRMLEVFESINIIRQCFDKMPQGPLVADITTELPAGRVGYTSIEAPRGESHHFAITGD 481 Query: 490 NQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVVDVRKKKSK 549 + + RWR RA TY N + M++ ++D + +G +DPC SCTDRM +D+R K Sbjct: 482 DNRPRRWRARAPTYQNLQGIPAMIKDQRIADMQISLGGIDPCMSCTDRMETIDIRTGARK 541 Query: 550 VVPYKELERYSIERKN 565 EL S RK Sbjct: 542 SWTKAELLSLSRSRKG 557 >UniRef50_A3DNE9 NADH dehydrogenase (Ubiquinone), 30 kDa subunit n=2 Tax=Desulfurococcaceae RepID=A3DNE9_STAMF Length = 548 Score = 574 bits (1481), Expect = e-162, Method: Composition-based stats. Identities = 218/559 (38%), Positives = 323/559 (57%), Gaps = 17/559 (3%) Query: 4 EKLGQHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVLFGN 63 + + QH + E +V + + L + + NYL + V+ ++ + + Sbjct: 6 DSVRQHII----EKLGDIVKETKYIGDQALMLRIDRNYLRKAVDIIHNDLNAYFRTMVAV 61 Query: 64 DERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYG 123 DER LNG +A YY+ ++ I V+ A++P PS+ VPAA W E E D+ G Sbjct: 62 DERSLNGTFASYYIFGLDAAH-LNIIVKTHTSADEPVLPSIIDIVPAADWYELEAWDLLG 120 Query: 124 LIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVP 183 + R VLPD+WP+ +YPLRKD +P Sbjct: 121 IKFE-NRKVHRFVLPDEWPEGIYPLRKDVEYTY---------RPKPRKVPRQPPTGQRIP 170 Query: 184 IGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAE-TRMGYNEVTFLSDRVCG 242 IGP H EP +F L+V+GE ++D +Y F+VHRG+EKLAE R Y ++ FL++R+CG Sbjct: 171 IGPYHPALHEPEYFELYVEGEKVVDVEYNGFHVHRGIEKLAEAPRFNYQKIPFLAERICG 230 Query: 243 ICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFM 302 ICGF HS +YT SVE A I VPERA+ IR+I+LE+ERLHSHLL +G+ CH G+D+GFM Sbjct: 231 ICGFVHSVSYTMSVERAAKIDVPERAEYIRSIILEIERLHSHLLWIGVVCHLLGYDAGFM 290 Query: 303 QFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDV 362 +R+RE M +AE+LTG+RKTYG+NL+GG+R+D+ D + + + +R E + L D+ Sbjct: 291 HTWRIREKVMVLAELLTGSRKTYGINLVGGVRKDINMDKIEAVKNTIEYIRSEFKHLSDL 350 Query: 363 LLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSE 422 + S + +R G G L + AR S VGP+ R SG RD R D+P+ Y + +V Sbjct: 351 ITSISQIVKRASGTGILSRDDARKLSVVGPVARGSGLDRDVRRDYPYAAYRDVYFKVPVY 410 Query: 423 QGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDI 482 D ++RL VRI+EV+ ++ +++ +D LPGGP+M E +G EAPRG+ I Sbjct: 411 NEGDNLARLLVRIDEVFESIYILEQLIDKLPGGPIMAEKLEVPEGVIGIGNVEAPRGEVI 470 Query: 483 HWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVVD 542 H ++T + + YRWR RA TY N P L+ MLR ++DAPL I S+DPC+SCTDR+ +VD Sbjct: 471 HVTIT-GHGRPYRWRVRAPTYQNIPALKIMLRDAPLADAPLTIASIDPCFSCTDRIVIVD 529 Query: 543 VRKKKSKVVPYKELERYSI 561 +R + +++ + Sbjct: 530 LRSNRRFKASMEQIIKAGR 548 >UniRef50_Q0W2B9 Hydrogenase, large subunit-like protein (HycE-like) n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W2B9_UNCMA Length = 524 Score = 561 bits (1445), Expect = e-158, Method: Composition-based stats. Identities = 183/536 (34%), Positives = 297/536 (55%), Gaps = 13/536 (2%) Query: 1 MSEEKLGQHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVL 60 M+ + + AA E + A + + V + LP V F+ + G L+ L Sbjct: 1 MTAKNITNEITAAFGEE-----MASARDVGNNVFVRAGKDALPYVASFVAKRYGASLATL 55 Query: 61 FGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRD 120 D R++ G Y +Y V+ + +++ EV + + S+TP + +A W ERE+ D Sbjct: 56 HVADTRQMTGGYTMYAVMPVA-SENLIVSIEAEVPESPGTFQSLTPMIYSANWFEREIAD 114 Query: 121 MYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNN 180 M+GL PVG PD R LVL D WP++ +PLRKD+ +TY + + + Sbjct: 115 MFGLTPVGHPDLRPLVLYDTWPEDYHPLRKDAPG------RPPKVDTYYPYHRVEGEGVF 168 Query: 181 VVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 240 +P+GP+H EPGHFR V GE ++ + R+ YVH+G+EK++E+ M Y++ FLS+R Sbjct: 169 EIPVGPVHAGVIEPGHFRFSVAGEPVLMLEIRMGYVHKGIEKISES-MTYDKGVFLSERT 227 Query: 241 CGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG 300 G G AHSTAY +VE GI+VP+RA+ IR + LE+ER+++HL ++G T ++ G Sbjct: 228 SGDNGMAHSTAYCQAVEQLAGIEVPDRARYIRTVFLEMERIYNHLGDVGGISLDTAYNVG 287 Query: 301 FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELV 360 + +RE +++ E +TG+R +N IGG+R+DL ++D+ + R + + + ++ V Sbjct: 288 AQHAYILRERMLQLNECITGSRLLRSVNKIGGVRQDLTREDIEKIRTAIIKAKLDFKDFV 347 Query: 361 DVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVH 420 D++ ++ RT G+L E A + VGP RASG +RD R DHP+ Y L VH Sbjct: 348 DLVNRQTSILDRTETTGKLPLEAAVSLNIVGPGARASGVSRDVRRDHPYAAYSDLNFAVH 407 Query: 421 SEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGD 480 + DV +R++V+I E+Y ++++I+ LD LP G + R + EAPRG+ Sbjct: 408 IRKEGDVNARMQVKIGEIYESMSIIEQALDRLPAGKIRAATGNIPQGRVGISLVEAPRGE 467 Query: 481 DIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 +HW ++G+N + +R + R ++ NW + GN V D PL+ S + YS D Sbjct: 468 LLHWILSGENDRPFRHKIRDPSFCNWLAMEIATPGNIVPDFPLVNKSFNLSYSGND 523 >UniRef50_Q3A825 NADH-quinone oxidoreductase subunit B/C/D n=103 Tax=cellular organisms RepID=NUBCD_PELCD Length = 794 Score = 554 bits (1427), Expect = e-156, Method: Composition-based stats. Identities = 155/573 (27%), Positives = 250/573 (43%), Gaps = 53/573 (9%) Query: 11 LAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLY---YKQGGWLSVLFGNDE-- 65 L L E F V D T+ +PE++ FL + L L DE Sbjct: 229 LEQLRERFGDDVRQEE--GADMPTLVADPAQVPELLRFLKQDIDQPYERLEDLTAIDETA 286 Query: 66 ---RKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMY 122 R + VY++LS E+ ++ V+ + ++ E PS+T PAA W ERE DM+ Sbjct: 287 RSQRPAHDLTMVYHLLSFERA--GYLRVKAPLRNDRAEVPSITGLWPAANWYEREAFDMF 344 Query: 123 GLIPVGLPDERRLVLPDDWPDELYPLRKDSM-----------DYRQRPAPTTDAETYEFI 171 G+ G PD RR+++P+ W + +PLRK D P + + Sbjct: 345 GVRFAGHPDLRRILMPEGW--QGHPLRKSHPSRATDMPPFTRDTATTMVPPEGSHFFSNR 402 Query: 172 NELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYN 231 + ++ +++ +GP H + L + GE I+D D + Y HRG EK+AE R +N Sbjct: 403 APVDNQSLSILNLGPQHPGTHGILRVILQLAGEEIVDLDSEIGYHHRGAEKIAE-RQHWN 461 Query: 232 EVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLA 291 + +DR+ + G ++ AY SVE G++VP RA+ IR +L E+ R+ SHL+ LG Sbjct: 462 QYIPYTDRIDYLAGSLNNLAYLYSVETLCGVEVPPRARYIRVLLSELFRIASHLVWLGTF 521 Query: 292 CHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQ 351 H G + F RE + E++TG R IGG+ DL + + Sbjct: 522 AHDVGAMTPVFYAFDSREKIFDIIELITGGRMHPAWFRIGGVPDDLPDGWLAAVEAFTRD 581 Query: 352 MRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVG 411 + E +L P RT GIG + + A + GP +RA+G A D R P+ G Sbjct: 582 FEARIDEFDRLLTGGPIFRARTEGIGTVSRQQAVELGFSGPNLRATGLAWDLRKSMPYGG 641 Query: 412 YGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTY------- 464 Y +V + G D +R VR+ E+ +L ++ + +P G + + + Y Sbjct: 642 YDEFDFDVVTAGGGDCFARYLVRLGELRQSLRIVRQAAEGMPQGRWISDQYRYAYPKRED 701 Query: 465 --------------------IPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 504 P E+ +G+ +++++ YR R R ++ Sbjct: 702 GLQDIESLIHHFLHVSRGPAAPRGECYRAIESSKGECGYYAVSDGGTGAYRLRIRTPSFP 761 Query: 505 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + L + RG V+D I+GSLD + DR Sbjct: 762 HLQALPQLSRGRLVADVITILGSLDYVLADLDR 794 >UniRef50_D2MJM9 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MJM9_9BACT Length = 583 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 157/585 (26%), Positives = 249/585 (42%), Gaps = 60/585 (10%) Query: 9 HYLAALNEAFPGVVLDH-AWQTKDQLTVTVKVNYLPEVVEFLYYKQG---GWLSVLFGND 64 L L+E FP VL + L+ V+ L EV FL+ G L+ + D Sbjct: 3 RVLETLHERFPEAVLSVREDPQRGDLSAQVRAQDLVEVARFLHDDPGMAFDHLTDICSAD 62 Query: 65 ERKLNGHYAV-YYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYG 123 + V Y+ LS+ T+ I ++ V +P +VT A + EREV D+ G Sbjct: 63 YPDDLERFEVIYHFLSLPHNTR--IRLKTRVTEEQPTLGTVTSIWKGANFLEREVYDLMG 120 Query: 124 LIPVGLPDERRLVLPDDWPDELYPLRKDSMDY-------------------RQRPAPTTD 164 + G PD RR++LP+D+ +E +PLRKD Sbjct: 121 ITFEGHPDLRRILLPEDY-EEGHPLRKDFPTEGKGWRSTFDFIPRLDEPESEWTEREIPQ 179 Query: 165 AETYEFINELGDKK-----NNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRG 219 + + F+ + ++ +GP H ++ L +DGE + A + Y+HRG Sbjct: 180 DQRHMFLAGDAPESAKRTTELLLNMGPQHPSTHGVLRVVLELDGERVAKAVPDMGYLHRG 239 Query: 220 MEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVE 279 +EKLAE + Y +V +DR+ +C ++ AY +VE +G+ +PERA+ +R I+ EV+ Sbjct: 240 VEKLAEG-LHYMQVIPHTDRLDYVCAMTNNYAYVRAVEKLVGVTIPERAEYVRTIVAEVQ 298 Query: 280 RLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLK 339 R+ HL LG G + F FR RE + E L GAR T IGG+ DL Sbjct: 299 RIVGHLFWLGTQALDIGAMTVFFWTFREREVLLDFFEQLCGARLTLNYYRIGGVDGDLTP 358 Query: 340 DDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGH 399 + + R + VQE +L RT + + E A +F GP +R SG Sbjct: 359 ALIERLRGFLKTFPEHVQEYDTLLQRNRIWVARTKNVAVISAEDAINFGLTGPTLRGSGV 418 Query: 400 ARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMV 459 A D R P+ Y + +V +G D R +R+ E+ + +I+ LD LP GP+M Sbjct: 419 AYDVRKLEPYGVYDRVEWDVPVGKGGDTYDRYWIRVEEMKQSARIIEQCLDQLPEGPIMA 478 Query: 460 EGFT---------------------------YIPHRFALGFAEAPRGDDIHWSMTGDNQK 492 + P E P+G+ + ++ + + Sbjct: 479 DMPQVIPPAKPNVMRDMESLIHHFIIFTQGFKPPKGETYCGTEVPKGELGFFLISDGSPR 538 Query: 493 LYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 YR + R+ ++ + +M RG +SD I G+ D DR Sbjct: 539 PYRMKIRSPSFVHMGAFDFMARGYLISDIITIFGTYDIVMGECDR 583 >UniRef50_C8W240 Hydrogenase, large subunit-like protein n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W240_DESAS Length = 525 Score = 548 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 182/505 (36%), Positives = 284/505 (56%), Gaps = 9/505 (1%) Query: 33 LTVTVKVNYLPEVVEFLYYKQGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWITVRV 92 + + V E V+ L +G +L + G DER NGH++VY V + T + ++ Sbjct: 30 IKLGVPAASFMETVKRLK-AEGAYLLTMTGVDERDYNGHFSVYSVFGLPGDT-TLVETKI 87 Query: 93 EVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDS 152 ++A P + S++P +P+A W ERE++DM G++P G PD RR+ + DWP +++P+RKD Sbjct: 88 VLNAENPTFTSISPVMPSAHWLEREIKDMLGIVPYGHPDLRRVAVHPDWPQDVFPMRKDF 147 Query: 153 MDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYR 212 + RQ P + +F G+ V P+GP+H EPGHFR F GE++I+ + Sbjct: 148 IAGRQVPRVQGEM---QFCKVEGEGLYQV-PVGPVHAGIIEPGHFRFFTFGEDVINLQAQ 203 Query: 213 LFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIR 272 LFY HRG+EK AE + + V +++RVCG+C +H+ +Y ++E+ GI P RA+ IR Sbjct: 204 LFYTHRGIEKTAEGKHFLDAVL-VAERVCGVCSASHAVSYAQAIESLAGINAPLRARYIR 262 Query: 273 AILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGG 332 +LLE+ERL++H+ ++G C GF G + ++E M+M L G R G + GG Sbjct: 263 TVLLEMERLYNHVGDIGNMCAGIGFSFGISRGAELKERLMRMNMKLAGHRYLRGTVVPGG 322 Query: 333 IRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGP 392 ++ DL D + ++RE++EL D +LS+ ++ R G L + ARD GP Sbjct: 323 VKIDL--KDTEGIGRALDTVKRELKELTDTMLSSQSLLDRMQTTGVLPTDAARDLGATGP 380 Query: 393 MVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNL 452 RASG RD R + P+ Y + +V + DV RL RI E + ++I +NL Sbjct: 381 AARASGVNRDLRREFPYAAYRRVSFQVPIQHEGDVYCRLIQRIEESEQSFDIIRQVFNNL 440 Query: 453 PGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYM 512 P G L P+ A+G+ E+ RG ++HW M+G + +YR+ R+A++ NWP + Sbjct: 441 PAGELQAPITYLQPYHTAVGYTESARGANVHWVMSGPDNTVYRYMVRSASHCNWPVVPLC 500 Query: 513 LRGNTVSDAPLIIGSLDPCYSCTDR 537 L GN V D PLI S + CY+C DR Sbjct: 501 LPGNIVPDFPLINKSFELCYACLDR 525 >UniRef50_B1ZSF2 NADH dehydrogenase (Quinone) n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZSF2_OPITP Length = 531 Score = 539 bits (1390), Expect = e-152, Method: Composition-based stats. Identities = 174/528 (32%), Positives = 262/528 (49%), Gaps = 6/528 (1%) Query: 10 YLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVLFGNDERKLN 69 L + F G + D+L + + + LY K GG L +F D R Sbjct: 10 VFDELQQRFEGQLQRVDASQPDELHLHAPLELASALCSTLYRKSGGRLVSVFAEDGRAGG 69 Query: 70 GHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGL 129 + VYY+ +++ ++ VRV V A +PE S+T V A W ERE++D++GL VG Sbjct: 70 AGFYVYYLYAVDAAHG-FVLVRVVVPAERPELISLTNAVHAVNWQEREIQDLFGLKLVGH 128 Query: 130 PDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHV 189 P+ RR VL DDWP E++PLRKD Q P E ++F G+ V P+GP+H Sbjct: 129 PNPRRCVLHDDWP-EVFPLRKDFD--LQTQLPPFSGERHKFREVAGEGVFQV-PVGPVHA 184 Query: 190 TSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHS 249 EPGHF V GE ++ R+FYVH+G EKL E+ + L++ + G FAH+ Sbjct: 185 GVIEPGHFLFSVAGEPVLYLQLRMFYVHKGTEKLFES-LPITHGVRLAESISGDSAFAHA 243 Query: 250 TAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRE 309 TA+ ++E A G+ P R + +R + LE+ER+ +H+ ++G C F + M R++E Sbjct: 244 TAFCHAIERAAGVAAPPRGRALRTLCLELERISNHVADIGAICTDVAFVTAQMHALRLKE 303 Query: 310 TSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNM 369 ++ E LTG R G+ +GG+R D + + ++ ++LV+++ S Sbjct: 304 QVLRWNEQLTGNRLLRGMACLGGVRFDFDSAQLDALAAFVDTLEQQFKDLVELIRSHSGT 363 Query: 370 EQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVIS 429 R G L P +ARD VG RASG D R D P Y + V DV Sbjct: 364 RDRLETTGVLAPAVARDLGIVGIAGRASGIDHDLRRDCPTDFYDQVQFTVPVFTEGDVQR 423 Query: 430 RLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGD 489 R+ VR E++ +L +I L +PGG + R ALG+ E RG+ HW T Sbjct: 424 RMVVRREELFQSLGIIRQVLAKMPGGAIATPVGDVPADRIALGYVEGWRGEIFHWVHTAP 483 Query: 490 NQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 +L R + + + NWP L + GN + D P++ S + YS TDR Sbjct: 484 GNRLARCKIKDPSLQNWPALSEAILGNIIPDFPVVNKSFNLSYSGTDR 531 >UniRef50_A1RZ40 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 Tax=Thermofilum pendens Hrk 5 RepID=A1RZ40_THEPD Length = 537 Score = 525 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 170/522 (32%), Positives = 279/522 (53%), Gaps = 13/522 (2%) Query: 35 VTVKVNYLPEVVEFLYYKQGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEV 94 V V + E V L + L+ + D L + Y G + V V++ Sbjct: 10 VQVPPEGIREAVRRLVAEGYAHLTAITAVD---LQDSIELIYHFDGGGGYRH---VSVKL 63 Query: 95 DANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMD 154 P PS+ VP A + E+EVRD++G+ ++RR +LP+ +P + P +D Sbjct: 64 PRANPTLPSIAQVVPGADYYEKEVRDLFGVNFQDGAEKRRFILPECYPPDAPPPLLKDVD 123 Query: 155 YRQRPAPTTDAETYE----FINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDAD 210 A +A T + ++ ++ VVP+GP H EP +F L VDGE I+ A Sbjct: 124 PASVKALVAEAPTCQVDAVGLHAPLSPESVVVPVGPYHPAFKEPEYFSLVVDGERIVKAF 183 Query: 211 YRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQM 270 R+ +VHRG+EK AE+R + ++ FL +R+CGIC +H+ + +VE + ++VP RA Sbjct: 184 VRIGFVHRGIEKAAESRSFFRDI-FLVERICGICSTSHAWCFVEAVERLLNMEVPRRAAY 242 Query: 271 IRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLI 330 +R ++ E+ER+HSH L LGL ++TGF++ FM + +RET M + E ++G R I Sbjct: 243 LRTLVAELERIHSHALWLGLVGYWTGFETMFMWVWGLRETIMDLLEEISGNRVHKSFVTI 302 Query: 331 GGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNV 390 GG+RRD+ + + + + RRE + L++ L + + RT GIGR + AR + V Sbjct: 303 GGVRRDVPDALLRRVSERVETFRREFESLLESLSYSEEIISRTKGIGRYSLDDARKYCAV 362 Query: 391 GPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLD 450 GP+ RA+G D R P+ Y + EV + DV + ++VR+ EV + ++I ++ Sbjct: 363 GPVRRAAGDPFDVRRIEPYGAYPEVEFEVPTSNEGDVYNLIRVRVKEVVESASIIQQLVE 422 Query: 451 NLPGG-PLMVEGFT-YIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPT 508 +P G P+ + F +P A EAPRG+ ++ + YR + R T AN Sbjct: 423 KMPSGNPVPPKPFMGTVPEGEAYSRIEAPRGELFYYVKANNTHNPYRVKVRTPTLANIQL 482 Query: 509 LRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVVDVRKKKSKV 550 +L G T+SD P+++ S+DPC+SC DR+T++D+ K+ +V Sbjct: 483 AAKILEGQTLSDFPVVVTSIDPCFSCMDRVTIIDLSGKRREV 524 >UniRef50_Q2YAA3 NADH-quinone oxidoreductase subunit C/D n=259 Tax=cellular organisms RepID=NUOCD_NITMU Length = 608 Score = 522 bits (1346), Expect = e-147, Method: Composition-based stats. Identities = 153/598 (25%), Positives = 242/598 (40%), Gaps = 66/598 (11%) Query: 1 MSEEKLGQHYLAALNEAF-------PGVVLDHAWQTKDQL-TVTVKVNYLPEVVEFLYYK 52 M L L F PG + +T D L T V N + EV+ +L K Sbjct: 16 MGGASNASDVLEELKNRFGPPGTDNPGGPMGVVQKTGDDLPTQWVSRNRVHEVLHYLKLK 75 Query: 53 ---QGGWLSVLFGNDER--------KLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEY 101 L L DER + +Y++LS E+ + ++V + Sbjct: 76 AERPYRMLYDLTAIDERTRVHREDQPASRFTVIYHLLSFERNAD--VCLKVALTDTDLRM 133 Query: 102 PSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAP 161 P++T PAA W ERE+ DM+G++ G P RR++LP W + + LRKD P Sbjct: 134 PTITDIWPAANWYEREIWDMFGIVFDGHPHLRRILLPPWW--QGHALRKDHPARATEMEP 191 Query: 162 TT---------------DAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENI 206 E + + +GP H + L +DGE I Sbjct: 192 FHLSTEKEEAEQETLRFHPEEWGMRRTHDGTDFMFLNLGPNHPSVHGVFRIVLQLDGEEI 251 Query: 207 IDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPE 266 IDA + + HRG EK+ E R ++ +DR+ + G ++ Y +VE GI+VP+ Sbjct: 252 IDAVPEIGFHHRGAEKMGE-RQSWHTYIPYTDRIDYLGGVMNNLPYVLAVEKLAGIEVPD 310 Query: 267 RAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYG 326 R +++R ++ E R+ SHL+ G G S F RE + E + G R Sbjct: 311 RVKVMRVMMAEFFRIASHLVFYGTFTQDLGALSPVFFMFTDRERVFDVVEAICGGRMHPS 370 Query: 327 LNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARD 386 IGG+ +DL R M + E + + ++ RT G+G + A + Sbjct: 371 WYRIGGVAQDLPNGWDRMVRDFLDYMPARLDEYDKIAVGNRILKARTRGVGGYSIDEAIE 430 Query: 387 FSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMID 446 + GP +RA G D R P+ GY +V + Q D R VR+ E+ +L +ID Sbjct: 431 WGVTGPNLRACGFEWDFRKARPYSGYDQFEFDVPTGQHGDCYDRCAVRVQEIRQSLRIID 490 Query: 447 YGLDNLPGGPLMVEGF---------------------------TYIPHRFALGFAEAPRG 479 L+N+P G + IP A EA +G Sbjct: 491 QCLENMPAGAHKADHPLTTPPLKKHTLHDIETLIDHFLGVSWGPVIPPGEAFVGIEATKG 550 Query: 480 DDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 ++ ++ ++ N YR R R ++ + + + RG +SD I+GS+D + DR Sbjct: 551 NNGYYLISDGNTTAYRVRIRTPSFPHLQMIPLISRGLMISDLIAILGSIDFVMADVDR 608 >UniRef50_B8I2P5 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=2 Tax=Clostridium RepID=B8I2P5_CLOCE Length = 530 Score = 518 bits (1334), Expect = e-145, Method: Composition-based stats. Identities = 167/534 (31%), Positives = 274/534 (51%), Gaps = 9/534 (1%) Query: 6 LGQHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVLFGNDE 65 + L + +L+ ++++ + + + E +Y L LF ND Sbjct: 2 VSAAILDTIKRLLSSHILESRLINENEIYFCISPSTVKEDCINVYKNIECVLVGLFANDT 61 Query: 66 RKLNGHYAVYYVLSMEKGTKCWITVRVEVDAN-KPEYPSVTPRVPAAVWGEREVRDMYGL 124 ++ VYY ++ + + IT+ +++ + + S+ VPAA ERE+ DMYG+ Sbjct: 62 TPIDNKLTVYYTFAV-RSSNTLITLYSKLENDGSAKVDSIALEVPAASLYEREIHDMYGI 120 Query: 125 IPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPI 184 + LPD R LV ++P +++PLR++ P + E F G+ V P+ Sbjct: 121 VFEELPDSRELVHHGNFPLDVHPLRRNFKSNTHLPFQQRELE---FSTITGEGVFEV-PV 176 Query: 185 GPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGIC 244 GP+H EPGHFR V GE II+ + +L+YVHRG+EKL E + Y +V S+R+ G Sbjct: 177 GPVHAGIIEPGHFRFSVAGEPIINLEAKLYYVHRGLEKLCENQH-YMKVLLFSERISGDE 235 Query: 245 GFAHSTAYTTSVENAMGIQ-VPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQ 303 F +S A+ ++E GI +PERA R + E+ER+ HL ++ C T + Q Sbjct: 236 TFTNSLAFCQAIEKLNGITYIPERAVYSRVLFAELERICGHLGDIQGLCVDTAYIFPSGQ 295 Query: 304 FFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVL 363 F +R + E LTG+R N GG+RRD ++ + + ++ +E +E V ++ Sbjct: 296 FAMMRRWIQLLNEQLTGSRFLRNTNKPGGLRRDFVRSNEKIILECINKLDKEFKETVAII 355 Query: 364 LSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQ 423 + R G L+ IA D + VGP RASG D R + P+ Y L V Sbjct: 356 KNNGMFIDRVEHTGILENSIAVDLNVVGPGGRASGVKTDVRKEFPYAAYSKLKFNVPEHS 415 Query: 424 GCDVISRLKVRINEVYTALNMIDYGLDNLP-GGPLMVEGFTYIPHRFALGFAEAPRGDDI 482 CDV R+ V+I EV ++N+I L+ +P GP+ V+ P+ +A G E+PRG+++ Sbjct: 416 NCDVNCRMNVKIEEVIESINIIKQVLEKMPEEGPVSVDIGELKPYSYAFGMTESPRGENL 475 Query: 483 HWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 H+ MTG+N ++R++ R ++ NWP L + + NT++D PLI S + Y+ D Sbjct: 476 HFVMTGENNTIFRYKVRTPSFCNWPALCHAVNTNTLTDFPLINKSFNLSYAGND 529 >UniRef50_D2U4G0 NADH-quinone oxidoreductase chain C/D n=1 Tax=Arsenophonus nasoniae RepID=D2U4G0_9ENTR Length = 614 Score = 515 bits (1326), Expect = e-144, Method: Composition-based stats. Identities = 149/578 (25%), Positives = 241/578 (41%), Gaps = 53/578 (9%) Query: 10 YLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGW--LSVLFGNDERK 67 + AL F L + +K L V+EFL + + L L G DER+ Sbjct: 40 IILALRNQFSPDAFTIQSTRTGMLVIWIKREQLLAVIEFLKKQPKPYVMLFDLHGVDERQ 99 Query: 68 L-------NGHYAV-YYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVR 119 + ++V Y+++S+E+ I ++V + PS+ P A W EREV Sbjct: 100 RVYRHGLPDADFSVFYHLISIERNRD--IMLKVALSEKDLNVPSLVSLFPNANWYEREVW 157 Query: 120 DMYGLIPVGLPDERRLVLPDDWPDEL----YPLRKDSMDYRQRPAPTTDAETYEFINELG 175 DM+G+ G P+ RRL++P W YP R D D E + Sbjct: 158 DMFGITFTGHPNLRRLLMPVTWQGHPLCKDYPARATEFDPFVLTKQKLDLEMESLTFKPE 217 Query: 176 D---------KKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAET 226 + + + +GP H +S L +DGE IID + Y HRG EK+ E Sbjct: 218 EWGMARGNEHEDFMFLNLGPNHPSSHGAFRIVLQLDGEEIIDCVPDIGYHHRGAEKMGE- 276 Query: 227 RMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLL 286 R ++ +DR+ + G + Y +VE GI VPER IR +L E+ R++SHLL Sbjct: 277 RQSWHSYIPYTDRIEYLGGCVNEMPYVLAVEKLAGIDVPERVMTIRVMLSELFRINSHLL 336 Query: 287 NLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTR 346 + G + F R+ + E +TG R IGG+ DL + + Sbjct: 337 YISTFIQDVGAMTPVFFAFTDRQKIYDIIEAITGFRMHPAWFRIGGVAHDLPQGWQKLLQ 396 Query: 347 QLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRAD 406 + M + + V L ++ R+VG+ + A D+ G +RA+G D R Sbjct: 397 EFLDWMPKRLDSYVKAALQNSILKGRSVGVAAYTTKEALDWGVTGAGLRATGLDFDIRKW 456 Query: 407 HPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGF---- 462 P+ GY EV D R+ +++ E+ +L+++ L+N+P GP + Sbjct: 457 RPYSGYENFEFEVPIGNNGDCYDRVMLKVEELRQSLHILKQCLNNMPAGPFKADHPLTTP 516 Query: 463 -----------------------TYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCR 499 +P A EA +G + ++ + N YR R R Sbjct: 517 PPKERTLQHIETMINHFLQVSWGPVMPANEAFQMIEATKGINSYYLTSDGNTMSYRTRVR 576 Query: 500 AATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 ++A+ + ++RG+ VSD + +GS+D S DR Sbjct: 577 TPSFAHLQQIPAVIRGSLVSDLIVYLGSIDFVMSDVDR 614 >UniRef50_C9LCY9 NADH dehydrogenase I, C/D subunit n=9 Tax=Bacteroidales RepID=C9LCY9_9BACT Length = 558 Score = 507 bits (1306), Expect = e-142, Method: Composition-based stats. Identities = 142/531 (26%), Positives = 232/531 (43%), Gaps = 23/531 (4%) Query: 25 HAWQTKDQLTVT-VKVNYLPEVVEFLYYK-QGGWLSVLFGNDERKLNGHYAVYYVLSMEK 82 +++L + + L ++ L + +L L G D + +G VY + S + Sbjct: 33 ETKPAENELQLHYLAPEDLHAEMQRLKDEEHFDFLETLTGMDWGE-DGLGVVYNLWSTTQ 91 Query: 83 GTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWP 142 + + D P P+V+ A EREV D +G+ +G PD RR+ L +DW Sbjct: 92 NKRISLKTAT-TDRENPFLPTVSDLWNIANIYEREVFDFFGIKFLGHPDMRRIFLREDW- 149 Query: 143 DELYPLRKDSMDYRQRPAPT--------------TDAETYEFINELGDKKNNVVPIGPLH 188 YP+RKD + P D N + + + VV IGP H Sbjct: 150 -NGYPMRKDDKPEEENPLRMDNEPLADVTTQYDRPDGSITTKENTIFTEDDYVVNIGPQH 208 Query: 189 VTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAH 248 ++ HFR+ ++GE I D L Y+HRG+EKL E+ + Y + L++R+ + + Sbjct: 209 PSTHGVLHFRVALEGERIRKIDPILGYIHRGIEKLNES-LTYPQTLALTERLDYLGAMQN 267 Query: 249 STAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVR 308 A +E A GI+V ER Q IR I+ E +R+ SH+L C G S F+ FR R Sbjct: 268 RHALCMCIEKAAGIEVSERVQYIRTIMDEFQRIDSHILFFSCLCQDMGATSAFLYGFRDR 327 Query: 309 ETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPN 368 E + + E G R N IGG+ D+ + + + ++ MR +QE D+ ++ Sbjct: 328 EQILDIFEETCGGRLILNYNTIGGVMADIHPNFVRRVKEFIPYMRHNLQEYYDIFVNNVI 387 Query: 369 MEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVI 428 R G+G L+ E F G RA+G + D R P+ Y + + + D Sbjct: 388 AHNRLEGVGVLNKEQVISFGCTGGTGRAAGWSNDLRKHQPYAAYDKVDFQEITYTEGDSF 447 Query: 429 SRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFT--YIPHRFALGFAEAPRGDDIHWSM 486 +RL VR+ E+ +L +I+ +D +P GP + IP E RG+ Sbjct: 448 ARLMVRMKEIEESLKIIEQLIDGIPEGPFQTKTKPIIKIPAGTYYSAVEGSRGEFGVLLE 507 Query: 487 TGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + ++ R R+ + + R N ++D I G++D DR Sbjct: 508 SKGDKFPSRLHYRSTGLPLVAAMDTICRDNFIADLMAIGGTVDYVVPDIDR 558 >UniRef50_Q5LH50 NADH-quinone oxidoreductase subunit C/D n=34 Tax=Bacteroidetes RepID=NUOCD_BACFN Length = 530 Score = 507 bits (1305), Expect = e-142, Method: Composition-based stats. Identities = 155/529 (29%), Positives = 239/529 (45%), Gaps = 31/529 (5%) Query: 36 TVKVNYLPEVVEFLYY-KQGGWLSVLFGNDERKLN---------GHYAVYYVLSMEKGTK 85 ++ L + + L KQ +L L G D + G VY++ S G + Sbjct: 6 YIEPAALHDEMLRLRNEKQMDFLESLTGMDWGVADEGDAPNVTRGLGVVYHLESTVTGER 65 Query: 86 CWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDEL 145 I + PE PSV+ AA + EREV D YG++ +G PD RRL L +DW Sbjct: 66 IAIKTSTN-NRETPEIPSVSDIWKAADFNEREVFDYYGIVFIGHPDMRRLYLRNDWV--G 122 Query: 146 YPLRKDSMDYRQRPAPTTDAETYEFINELG---------------DKKNNVVPIGPLHVT 190 +P+RKD+ + P + ETY+ E+ D + VV IGP H Sbjct: 123 HPMRKDNNPEKDNPLRMDNEETYDTTREIELNPDGTYQTQENVIFDDREYVVNIGPQHPA 182 Query: 191 SDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHST 250 + FR+ ++GE I D Y+HRG+EK+ E+ + Y + L+DR+ + + Sbjct: 183 THGVMRFRVSLEGETIKKLDANCGYIHRGIEKMNES-LTYPQTLALTDRLDYLGAHQNRH 241 Query: 251 AYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRET 310 A +E AMGI+V ER + IR I+ E++R+ SHLL G + F FR RE Sbjct: 242 ALCMCIEKAMGIEVSERVKYIRTIMDELQRIDSHLLFYSCLAMDLGALTAFFYGFRDREM 301 Query: 311 SMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNME 370 + M E G R N IGG++ DL + + + ++ +R + E DV Sbjct: 302 ILDMFEETCGGRLIMNYNTIGGVQADLHPNFIPRVKKFIPYLRGIIHEYHDVFTGNVIAR 361 Query: 371 QRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISR 430 QR G+G L E A F G RASG A D R P+ Y + + D +R Sbjct: 362 QRLKGVGVLSREDAISFGCTGGTGRASGWACDVRKRMPYGVYDKVDFKEIVYTEGDSFAR 421 Query: 431 LKVRINEVYTALNMIDYGLDNLPGGPL--MVEGFTYIPHRFALGFAEAPRGDDIHWSMTG 488 VR++E+ +LN+I+ +DN+P GP+ ++ +P E RG+ + + Sbjct: 422 YMVRMDEIMESLNIIEQLIDNIPEGPIQEKMKPIIRVPEGSYYTAVEGSRGEFGVFLESH 481 Query: 489 DNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 ++ YR R+ + + RG ++D I G+LD DR Sbjct: 482 GDKTPYRLHYRSTGLPLVSAVDTICRGAKIADLIAIGGTLDYVVPDIDR 530 >UniRef50_Q6MIR5 NADH-quinone oxidoreductase subunit C/D n=1 Tax=Bdellovibrio bacteriovorus RepID=NUOCD_BDEBA Length = 560 Score = 506 bits (1303), Expect = e-142, Method: Composition-based stats. Identities = 133/541 (24%), Positives = 228/541 (42%), Gaps = 41/541 (7%) Query: 31 DQLTVTVKVNYLPEVVEFLYYK-QGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWIT 89 + V P ++ FL Q +L + G D + V Y L K + + Sbjct: 27 GDDVIEVPKEDAPALLLFLRESGQFDFLMDVCGADYPSREKRFDVVYNLFNSKDSS-RLR 85 Query: 90 VRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLR 149 V+ +V + + P A W ERE DM+G+I G P+ R+++ + +PLR Sbjct: 86 VKAQVGEGE-SIGTAIPAYRGADWFEREAYDMFGIIFEGHPNLRKILTHHQFV--GHPLR 142 Query: 150 KDSMDYRQRPAPTTDAETYEFINELG------DKKNNVVPIGPLHVTSDEPGHFRLFVDG 203 KD Q+ T++ F NE G + K + IGP H +DG Sbjct: 143 KDYDANNQQAC--TNSLPIHFNNEPGSPGDVLNDKYLPLNIGPSHTAMHGTLRVMAEMDG 200 Query: 204 ENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQ 263 E I+ + + Y+HR EK+AET YN+V +DR+ ++ Y +VE +G++ Sbjct: 201 ETIVRCNNEIGYLHRCFEKMAETH-PYNQVIPYTDRLNYCSAPMNNIGYCKAVERLLGVE 259 Query: 264 VPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARK 323 +P +AQ +R IL E+ R+ H + +G G + F F +RE + E L GAR Sbjct: 260 IPPKAQAMRVILAELSRIIDHTIAIGTGAMDLGALTSFFYMFGMREKVYGLFEKLCGARL 319 Query: 324 TYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEI 383 T + IGG+ +D + + L +++R+ E+ ++++ QRT + + Sbjct: 320 TVSMTRIGGMAQDAPEGWFDEVLALVKEIRKGTDEMANMVIDNKIFIQRTKNVCPVSAAD 379 Query: 384 ARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALN 443 A + GPM+RA G D R P+ GY L +V D+ R VR E+ ++ Sbjct: 380 AIQWGYTGPMLRACGVNLDLRKAQPYYGYDALDFDVPVGTNGDIYDRYLVRFEEMRQSVR 439 Query: 444 MIDYGLDNLPGGPLMVEGF---------------------------TYIPHRFALGFAEA 476 +I+ N+PGG + P EA Sbjct: 440 IIEQVCKNVPGGDYTIRDKGIVLPEKKDVYGNIEGLMNHFMLIIKGLRPPVGEVYDATEA 499 Query: 477 PRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 G+ + ++ + YR + R +A + + +++G ++DA + S++ D Sbjct: 500 ANGELGFYLVSDGSANPYRLKVRPPCFAIYQSFPTVVKGAMLADAIATVASMNLIAGELD 559 Query: 537 R 537 R Sbjct: 560 R 560 >UniRef50_Q2C5T4 NADH dehydrogenase I, B/C/D subunits n=2 Tax=Photobacterium RepID=Q2C5T4_9GAMM Length = 565 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 146/563 (25%), Positives = 245/563 (43%), Gaps = 45/563 (7%) Query: 14 LNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVLF---GNDERKLNG 70 L E F +H + + VK +L + + FL + +LF DE + G Sbjct: 9 LIERFDAKAPNHEIIGCE--SFEVKKEHLIDTLHFLKNEASSRFEMLFDLSAIDECERGG 66 Query: 71 HYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLP 130 +V+Y L + K +I++R + + E P+V P A W EREV DM+G+ P Sbjct: 67 GLSVFYYL-LSVKNKQFISIRTHIANDTIEVPTVVGLWPNANWYEREVYDMFGIKFTDHP 125 Query: 131 DERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINEL--------GDKKNNVV 182 D RR++ D W + +PLRK D E +F + + D + V+ Sbjct: 126 DLRRILTFDFW--KGHPLRKSYPCRATLMDEPFDLEGPDFDDVMKSYDIQGKQDDGSMVL 183 Query: 183 PIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCG 242 IGP H +D ++ + GE I D D + + HRG EK+AE R ++ +DR+ Sbjct: 184 NIGPNHPGTDGVIRLKVKMKGEFIEDLDQEIGFHHRGAEKIAE-RHTFHNYIPYTDRIDY 242 Query: 243 ICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFM 302 + G A Y +E GI+VPERA+ +R +L E+ R+ SHL+ G H G + Sbjct: 243 LGGVAGELPYLLGLEAMTGIEVPERAKTMRIMLCELFRISSHLVWFGSITHNLGGMAPAF 302 Query: 303 QFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDV 362 F RE + E++ G R IGG+ +DL + Q + + V +L + Sbjct: 303 YAFTEREKIFDVIELICGGRMHPAFFRIGGVSQDLPDGWQDKVEHACQGIEQLVPDLEKL 362 Query: 363 LLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSE 422 + + + RT I +A D+ GP +RA+G D R D P++GY +V Sbjct: 363 MTHSMIFKIRTQNIAVYSQSMALDWGLTGPNLRATGINFDMRKDFPYMGYEDYDFDVPVG 422 Query: 423 QGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTY------------------ 464 Q D +R +R+ EV +L +I +P GP++ + Sbjct: 423 QDGDAYTRTVLRVQEVVESLKIIRQAAARMPEGPILADNAPSFGFPRKQNALRDIETLIH 482 Query: 465 ----------IPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLR 514 P E +G + +++ YR R R ++ ++ +++ + + Sbjct: 483 SFVDTGRGFNFPVAETFYATETAKGVTSYHTISNGTGCPYRVRIRTPSFTHFQSVKAVSK 542 Query: 515 GNTVSDAPLIIGSLDPCYSCTDR 537 G+ +S+ +IGS+D + DR Sbjct: 543 GDLLSNIICLIGSIDYVLADIDR 565 >UniRef50_Q24ST8 Formate hydrogenlyase subunit 5 n=2 Tax=Desulfitobacterium hafniense RepID=Q24ST8_DESHY Length = 554 Score = 504 bits (1297), Expect = e-141, Method: Composition-based stats. Identities = 180/530 (33%), Positives = 262/530 (49%), Gaps = 27/530 (5%) Query: 29 TKDQLTVTVKVNYLPEVVEFLYYKQGGW--LSVLFGNDERKLNGHYAVYYVLSMEKGTKC 86 TK++ V +K LPEV+E L+ K L GNDER L + +Y +L Sbjct: 31 TKNEGLVWLKPACLPEVMEQLWLKVPSRPLLMTHVGNDERSLGHGFVIYLLLHFPGD--- 87 Query: 87 WITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELY 146 T+ + + +PS+T PA W EREVRD+ GL P G PD R LVL W Y Sbjct: 88 -FTLTLGARGIEKSFPSLTLLCPALNWPEREVRDLLGLHPDGHPDPRPLVLHPGWTGGFY 146 Query: 147 PLRKDSMDYRQRPAPTTDAE----------TYEFINELGDKKNNVVPIGPLHVTSDEPGH 196 PLRK + E F G+ +P+GP+H EPGH Sbjct: 147 PLRKPCPETPASIGGECPGEALKEVSFNPQPLSFTEAEGEGTFE-IPVGPVHAGIIEPGH 205 Query: 197 FRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSV 256 FR GE ++ D +LFY H+G+EKL E + E + +RVCG+C +H+ AY +V Sbjct: 206 FRFQTIGETVLHLDAQLFYTHKGIEKLLEGK-DLEEGLKIVERVCGVCAVSHALAYCEAV 264 Query: 257 ENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAE 316 E G++VP R +L E+ERL++H+ ++G C GF G + + +E ++ Sbjct: 265 EKLKGMEVPRWILGWRTVLAELERLYNHVGDIGNLCAGVGFALGNVNALQNKEQLQRLNH 324 Query: 317 ILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGI 376 L G R G GG+++ ++ ++ ++ ++ +E + ++ QR + Sbjct: 325 QLFGHRFLRGNITPGGVKKIPQGEERAYLQRRLAELEQDFEEWLPLIQEHDGFRQRAITT 384 Query: 377 GRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRIN 436 G L + A D GP RASG ++D R H + Y L ME EQ DV SRL VR+ Sbjct: 385 GVLSKQSALDLGVTGPAARASGISQDWRERHAHLLYEELKMEPQVEQEGDVWSRLMVRVR 444 Query: 437 EVYTALNMIDYGL------DNLPGGPLMVEG---FTYIPHRFALGFAEAPRGDDIHWSMT 487 EV + ++ L D + G + G F+ P+ FA G AE+PRG D+ W M Sbjct: 445 EVKQSFALLAELLEGDFLQDTVEQGDFDLNGSGAFSPQPYSFAWGCAESPRGTDVIWLML 504 Query: 488 GDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 D K+YR R R+A+YANW + ++GN V D PLI S + CYSC DR Sbjct: 505 DDEGKIYRCRIRSASYANWAAVPLAVQGNIVPDFPLINKSFELCYSCCDR 554 >UniRef50_B2V8J2 NADH-quinone oxidoreductase subunit C/D n=15 Tax=Aquificales RepID=NUOCD_SULSY Length = 576 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 132/574 (22%), Positives = 218/574 (37%), Gaps = 57/574 (9%) Query: 13 ALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYK---QGGWLSVLFGNDERKLN 69 L E F + K L+V V + E + FL Q L D + Sbjct: 11 KLEERFG---YPKVSEGKGVLSVEVPKDKFIEFLTFLKEDPEYQFKMFIDLTIIDHGEKE 67 Query: 70 GHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGL 129 V+ + I V+ A P++T A W ERE DM+G+ G Sbjct: 68 NPRFQGVVILFSPKNQERIIVKT--WAENETLPTLTNLWKGAKWAEREAWDMFGIKFEGH 125 Query: 130 PDERRLVLPDDWPDELYPLRKDSMDYR----------------------------QRPAP 161 + R++L + +P +PLRKD Sbjct: 126 ENLVRMLLWETYP--YHPLRKDFPLEGIKDTELPSLNETLRGENLEGLFNYDRMHTALPT 183 Query: 162 TTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGME 221 D E + V+ GPLH + F +DGE + D + +HRG+E Sbjct: 184 MEDLEITQKKRMPVKTSQIVLNWGPLHPGTHGTIWFLFDLDGEYVKQCDIIIGQLHRGVE 243 Query: 222 KLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERL 281 KL E + + + +DR+ I + AY + E +GI+VPE+A+ IR ++ E+ R+ Sbjct: 244 KLGEN-VNWQQFIPYTDRMDYIAAINENHAYVLAAEKMLGIEVPEKAKWIRTMMAELSRI 302 Query: 282 HSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDD 341 +SHLL LG G + F+ FR RE M + E +TGAR T IGG+ DL Sbjct: 303 NSHLLWLGTYALDLGALTMFLYTFREREKIMDIIEGITGARFTINYFRIGGVFADLPYGA 362 Query: 342 MIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHAR 401 + L + + + + + +L R + + E + G + R SG Sbjct: 363 LDAIEHLIKDLPQRINDYETLLTRNRVWLSRNKDVCVITEEDVYQYGLTGAVARGSGVPY 422 Query: 402 DTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEG 461 D R + YG + ++ + D R VR+ E+ ++ +I+ + L Sbjct: 423 DVRKIDKYDAYGEVEFDIPVGEKGDSYDRYLVRMEEMRQSIRIIEQCIAKLRKMSKDDPY 482 Query: 462 F-----------------TYIPHRFALGFAEAPRGDDIHWSMTGDNQ-KLYRWRCRAATY 503 F +P ++ PRG+ + + K +R R R+ + Sbjct: 483 FFQTPDEKKLKVTIDGRGMKLPAGETYASSDNPRGELGFYIYNKKDGLKAHRMRIRSGAF 542 Query: 504 ANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 N + G ++DA ++ ++DP TDR Sbjct: 543 YNLQVFTKAIIGRPIADAITLLSTIDPVVGETDR 576 >UniRef50_B2V8R2 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=3 Tax=Aquificales RepID=B2V8R2_SULSY Length = 524 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 149/530 (28%), Positives = 275/530 (51%), Gaps = 12/530 (2%) Query: 11 LAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVLFGNDERKLNG 70 + L + ++ D+++ T++++ + L +V ++L+ L+ + D+ Sbjct: 2 VEELLKPIKDLITDYSFNTENEIVIHTSDFNLAKVSQYLFRDLDCELATVVATDDDDRFS 61 Query: 71 H---YAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPV 127 + + YV S + V +V K + S+ +PA W ERE+RDM+GL+P+ Sbjct: 62 DDRCFTIRYVYSY-HKKNVFFIVENKV---KERFNSLANIIPALNWYEREIRDMFGLVPL 117 Query: 128 GLPDERRLVL-PDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGP 186 PD R LVL P+++P +L+PLRKD D + RP + YE+ G+ N++ +GP Sbjct: 118 NHPDPRPLVLFPENFPSDLHPLRKDF-DIKTRPEFKSYG-KYEYKEVEGEGVFNIL-VGP 174 Query: 187 LHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGF 246 +H EPGHFR + GE+I+ + R F+ HRG+EKLAE + EV + +V G + Sbjct: 175 IHAGIIEPGHFRFSLAGEHILQLEIRHFWKHRGVEKLAEGKTA-EEVLEIVPKVSGDHSY 233 Query: 247 AHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFR 306 AH+ AY ++E ++P+RA+ IR + E+ERL +L ++ + G F Sbjct: 234 AHTLAYVQAIEKLSNTEIPKRAKYIRVLFAELERLMCNLNDVAWLFQDVAYSFGAQGMFI 293 Query: 307 VRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLST 366 ++E M++ + LTG R + IGG+ DL ++ + + + + ++ + Sbjct: 294 LKEEVMRLNKALTGNRFNKNVLKIGGVSVDLNQEKINLIIDKLGYITDKFEFYKKIIFDS 353 Query: 367 PNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCD 426 ++ R GR+ E ++ S +G RAS D R +HP++ Y L + + D Sbjct: 354 ASILDRFETTGRILYETVKELSCIGYTARASDLKSDIRKEHPYLIYDKLTFTSQTFEEGD 413 Query: 427 VISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSM 486 +RLK R++++ ++++I L +LP G + + +R+ LG++E RG+ +++ Sbjct: 414 CFARLKCRLSDIEDSISIIKEVLSDLPDGEIFTQSNPLPANRWTLGYSEGQRGNIMYFVK 473 Query: 487 TGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 T K+ R + R ++ NW +++ + G+ V+D PL+ SL+ Y+ TD Sbjct: 474 TDKEGKIDRLKIRDPSFNNWQAIQWAVLGDIVADFPLVNKSLNLSYAGTD 523 >UniRef50_D1Z1Z0 Putative [NiFe]-hydrogenase large subunit n=1 Tax=Methanocella paludicola SANAE RepID=D1Z1Z0_METPS Length = 530 Score = 487 bits (1253), Expect = e-136, Method: Composition-based stats. Identities = 154/534 (28%), Positives = 257/534 (48%), Gaps = 12/534 (2%) Query: 35 VTVKVNYLPEVVEFLYYKQGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEV 94 V ++ + + + V L K+G L G D Y+ M++ ++ I +R + Sbjct: 4 VEIRPDAISDNVTEL-LKRGARLIYASGVDMGVRGIKVNYYFCFDMKEPSEHTI-LRTYL 61 Query: 95 DANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMD 154 D P S+TP A W ERE+ + G+ G P+ L LP +W D++Y + D Sbjct: 62 DRENPVVQSITPITDQADWSERELIEFLGVKVQGHPNPTHLWLPLNW-DDMYLNGRPEAD 120 Query: 155 YRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLF 214 + T N + +P GP H E ++ V+ E + D +L Sbjct: 121 HETERINAAPPATTPRDNIVTLPV-TAIPYGPYHPAFIESNFLKMSVEDEVVKKVDLKLG 179 Query: 215 YVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAI 274 + HR + KL E R Y ++ FL++R+CG C H+ ++ SVE+ I +P +A++ R + Sbjct: 180 FNHRSVIKLMERRDYYKDI-FLAERICGFCNSHHALSFARSVEDIASIDIPPKAKLARTL 238 Query: 275 LLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIR 334 L E+ER+ SHLL +GL TGF + M RVRE E+++G R T+GL IGGIR Sbjct: 239 LCEMERIQSHLLAVGLIGDLTGFRTMLMHSLRVREEMQDSLEVVSGQRVTHGLITIGGIR 298 Query: 335 RDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMV 394 RD+ + M++ V E D LS + R +G L E + VGP Sbjct: 299 RDITPAQADFILNKLRIMKKSVPEFFDQALSNDVLVGRLENVGVLSLENSVKLGAVGPTA 358 Query: 395 RASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPG 454 R SG D R + P+ Y + ++ +E G D ++R+KV++ EV ++++ + + + Sbjct: 359 RGSGLRIDVRKNSPYEAYEDVDWDIVTENGGDSLARMKVKMREVLMSMHIAEQCCEKIKT 418 Query: 455 GPL-MVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYML 513 P + +P A+ +E PRG+ ++ + R R T+ + ++ Sbjct: 419 APAGLATKVNELPCGEAISKSEPPRGELLYHVASNGTNTPDFVRIRVPTFLTAHIMLRLI 478 Query: 514 RGNTVSDAPLIIGSLDPCYSCTDRMTVVDVRKKKSKVVPYKELERYSIERKNSP 567 +G V D P IIGS+DPC+SCTDR+ ++ + + VV + L ++ K +P Sbjct: 479 QGGWVGDVPAIIGSIDPCFSCTDRVAII--KNNEKSVVDMRTL----VDHKRTP 526 >UniRef50_B0R3U3 NADH dehydrogenase-like complex subunit CD n=16 Tax=Halobacteriaceae RepID=B0R3U3_HALS3 Length = 562 Score = 485 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 139/540 (25%), Positives = 228/540 (42%), Gaps = 23/540 (4%) Query: 17 AFPGVVLDHAWQTKDQLT---VTVKVNYLPEVVEFLYYKQGGWLSVLFGNDERKLNGHYA 73 A ++ DH + +D L ++ + + +V+ L + G L + + Sbjct: 27 ALEALIEDHVLEREDHLNAPGFVIRADAVQDVLSTLKTEAG--FDHLSCVTAEEHEDRFE 84 Query: 74 VYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDER 133 Y L +++ V + P + P A W ERE D+ G+ P+ Sbjct: 85 SIYHLRKYDDPTQEVSIIVPTSRDNPVSETAEPVFRTADWHEREAYDLVGVEYDDHPNLE 144 Query: 134 RLVLPDDWPDELYPLRKDSMDYRQRPAPTTD-AETYEFINELGDKKNNV-VPIGPLHVTS 191 R++LPD W + +PL D + + + E + D + + + IGP H + Sbjct: 145 RILLPDTW--QGHPLGLDYNQNKPQIVTFDEHKNPLEGHEQAADDSDTMFLNIGPHHPAT 202 Query: 192 DEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC-GICGFAHST 250 H +DGE + D + + Y+HR E++A+ +++ DR G G + Sbjct: 203 HGVLHVETVLDGEQVADVNPDIGYLHRCEEQMAQKGTYRHQIMPYPDRWDYGPGGILNEW 262 Query: 251 AYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT--GFDSGFMQFFRVR 308 AY + E+ I VPE AQ++R + E+ R+ H+L LG C F + FM R R Sbjct: 263 AYARTAEDLADIDVPEYAQILRTMGGELCRIACHMLALGTFCLDIYGDFTAIFMYAMRDR 322 Query: 309 ETSMKMAEILTGARKTYGLNLIGGIRRDLLK---DDMIQTRQLAQQMRREVQELVDVLLS 365 E + E LTG R +GG+ D+ + + R ++ + E D++ S Sbjct: 323 EVVQNILEDLTGQRMMLNYLRLGGVVWDIPEPRAEFFESVRDFLDELPERLDEYSDLITS 382 Query: 366 TPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGC 425 + RTV G LD E A+D+ GP+ R SG D R D P+ Y L +V +E G Sbjct: 383 NEIFQARTVNTGVLDYETAKDYGVTGPVARGSGVDYDVRRDDPYGYYPELDWDVVTEDGG 442 Query: 426 DVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGF------TYIPHR--FALGFAEAP 477 D SRL VR+ EV + +I+ +D L G P T P E Sbjct: 443 DNYSRLLVRMEEVEQSARIIEQCVDLLEGWPEDERDIQANVPRTLKPEAGTETYRTVEGA 502 Query: 478 RGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 +G+ + +K R++ R+ ++N L+ M G + D +GSLD DR Sbjct: 503 KGELGVYIRADGTEKPGRFKIRSPCFSNLSALKEMSTGEYIPDLVATLGSLDVILGEVDR 562 >UniRef50_C6NSM4 NADH dehydrogenase I, B/C/D subunits n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NSM4_9GAMM Length = 565 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 144/547 (26%), Positives = 229/547 (41%), Gaps = 47/547 (8%) Query: 33 LTVTVKVNYLPEVVEFLYYK---QGGWLSVLFGNDERKLNGHYA-VYYVLSMEKGTKCWI 88 L ++ L + +L L L DER G + +Y++ + G + Sbjct: 24 LDFSLPTANLKPCLRYLRDDWRSPYRCLWDLTAMDERPSGGGFTLIYHLFNYAVGE--LL 81 Query: 89 TVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPL 148 +RV + A + PS+T A W EREV D++GL G PD RR++LP W +PL Sbjct: 82 RLRVPLPAGQETAPSLTDLYANANWYEREVYDLFGLRFAGHPDLRRILLPPQW--RGHPL 139 Query: 149 RKDS-----------MDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHF 197 RK+ +D + + L D + V+ +GP H + + Sbjct: 140 RKEEAIRATERPPIVIDREHLQERLGEYQRSPDGQALDDGETMVLNVGPHHPGTHGILRY 199 Query: 198 RLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVE 257 L + GE I+ D + Y HRG+EK+AE Y+ +DRV + G Y ++E Sbjct: 200 ILRLRGEEIVAVDPDIGYHHRGVEKIAEGH-SYHNFIPYTDRVDYLGGVLGEWPYLRAIE 258 Query: 258 NAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEI 317 I VPERA+ IR +L E+ R+ SHL+ LG + G FR R +++ E Sbjct: 259 KLAAIHVPERAEGIRTLLAELCRISSHLVWLGSYGNDLGTMGPAFYAFRDRAWLLELMER 318 Query: 318 LTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIG 377 TG R IGG+ DL + L +++ + + + + + P RT G+G Sbjct: 319 FTGGRLHPQFFRIGGVADDLPEGWRSDLLALLRRIEKGLPDSERLTVENPIFRARTEGVG 378 Query: 378 RLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINE 437 + E A + ++R++G A D R P+ Y + EV D SR + I E Sbjct: 379 VVTAEQAERWCATSILLRSTGRAFDLRKAAPYGLYDRVDFEVPVTTAGDAWSRTWLHIAE 438 Query: 438 VYTALNMIDYGLDNLPGGPLMVEGFTY---------------------------IPHRFA 470 + ++ ++ D LP GP + P A Sbjct: 439 IRESIRILRQLADILPEGPTLACDAPLALMPKSRTLLDIETLIHHFEQMADAFGPPPGSA 498 Query: 471 LGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDP 530 LG E+ RG ++ ++ K YR R R ++A+ + + RG + D IGSLD Sbjct: 499 LGLGESARGLLGYFVVSDGGPKPYRLRVRTGSFAHVQMITELGRGLRLPDFIATIGSLDY 558 Query: 531 CYSCTDR 537 + DR Sbjct: 559 VLADLDR 565 >UniRef50_Q0W6T4 [NiFe]-hydrogenase, large subunit (EchE-like) n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W6T4_UNCMA Length = 486 Score = 481 bits (1238), Expect = e-134, Method: Composition-based stats. Identities = 150/492 (30%), Positives = 249/492 (50%), Gaps = 17/492 (3%) Query: 61 FGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRD 120 G D+ Y+ + C +R +D P SVT P A W ERE+ + Sbjct: 4 TGVDKGVAGIRVDYYFGFDHLE-PGCHTILRTFLDRENPVLKSVTTLTPQADWSEREMIE 62 Query: 121 MYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNN 180 G+ PD R L LP +W + AP ++ + + + + Sbjct: 63 FLGVRAEEHPDPRHLWLPLNW----------EQMHTDEAAPEKKPQSIQASDHITTMPVS 112 Query: 181 VVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 240 +P GP H E +F++ V+ E + AD +L + HR + KL E R Y ++ +L++RV Sbjct: 113 TIPYGPYHPAFIESNYFKMAVEDEVVKKADLKLGFNHRSIIKLMERRDYYKDI-YLAERV 171 Query: 241 CGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG 300 CG+C H+ ++ +VEN + VP+RA +IR ++ E+ER+ SHL+ +G+ G+ + Sbjct: 172 CGLCNAHHALSFCLAVENIGQVTVPKRADIIRTMICEMERIQSHLMAIGILGDLVGYKTM 231 Query: 301 FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELV 360 MQF R+RE E+++G R T+GL +GG+RRD+ ++ +++ VQ L Sbjct: 232 LMQFLRIREDIQDSLELVSGQRVTHGLITLGGVRRDITPAQSNFVKRKLASLKKGVQTLY 291 Query: 361 DVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVH 420 D +LS + R +G L PE A VGP R SG D R + P+ Y L ++ Sbjct: 292 DEMLSNNVLIGRLKNVGVLPPEEAVRLGAVGPTARGSGQRLDVRKNTPYAYYENLDWDIV 351 Query: 421 SEQGCDVISRLKVRINEVYTALNMIDYGLDNLPG-GPLMVEGFTYIPHRFALGFAEAPRG 479 ++ GCD ++R++V++ E ++++++ L+ L P ++ +P ALG E PRG Sbjct: 352 TDNGCDSLARVEVKMREALVSISIVEQCLEKLSTVPPEIITKLEELPCAEALGKTEPPRG 411 Query: 480 DDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMT 539 + ++ + R R T+ + +L G+ V+D P I+GS+DPCYSCTDR+T Sbjct: 412 ELLYHVASNGTNTPEFVRIRVPTFMTAYIMLKLLHGSYVADVPAIMGSIDPCYSCTDRVT 471 Query: 540 VVDVRKKKSKVV 551 V K +K+V Sbjct: 472 V----HKDAKIV 479 >UniRef50_A0RMD1 NADH-quinone oxidoreductase subunit C/D n=5 Tax=Bacteria RepID=NUOCD_CAMFF Length = 561 Score = 477 bits (1229), Expect = e-133, Method: Composition-based stats. Identities = 129/569 (22%), Positives = 225/569 (39%), Gaps = 51/569 (8%) Query: 11 LAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQG-GWLSVLFGND--ERK 67 L + F VL H+ T L+V + N + E V F+ G L+ + D Sbjct: 2 LEKFSSKF--NVLKHS-TTNGLLSVQINPNDIYEAVLFVRDNIGFEILADIVCVDNLYID 58 Query: 68 LNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPV 127 +++YY+ I + +++ SV +A WGERE D +G+ Sbjct: 59 KEKRFSLYYIFRKISSENLCIYIDIDI---NQSVKSVESIYKSANWGERECFDQFGVKFE 115 Query: 128 GLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELG------------ 175 P+ +R++ D+ + YPLRKD + + +D E NE+ Sbjct: 116 NHPNLKRILNHKDF--QGYPLRKDYPITKYQVLYESDDLVGEMKNEMQRAGLASEENDEF 173 Query: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235 K + IGP H + + +DGE II + Y+HRG EK E Y ++ Sbjct: 174 KTKYTFLNIGPSHPATHGTIRNFVALDGEKIISCVTEIGYLHRGFEKACENH-SYAQIIP 232 Query: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 295 +DR+ ++ Y +VE A+G+ +P+R +R IL E+ R+ H + LG Sbjct: 233 YTDRLNYCSAMLNNVGYAKAVEEALGLNLPDRGIFMRVILGELARIIDHEVCLGAMFVDM 292 Query: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 355 G + + + RE LTGAR T IGG+ D + + + + Sbjct: 293 GGLTNYWYLYNPRERIYNFLSKLTGARFTNSFARIGGMANDFYDGWKEELLAHLKDVEKG 352 Query: 356 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415 V + + ++ R I +++ A + GP +RASG + D R D P+ Y Sbjct: 353 VDDTMILIEKNRIFLDRVQNICKINANDALSYGFSGPNLRASGVSFDLRKDKPYYYYDSF 412 Query: 416 PMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFT------------ 463 V D+ R+ VR E+ ++++I + +P G + V+ Sbjct: 413 DFSVPVGSEGDIYDRMFVRFFEMRESISIIRQAIKLIPEGKISVDDKDVFLPSKDQVYSN 472 Query: 464 ---------------YIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPT 508 +P+ +E G+ + + YR + R + Sbjct: 473 IESLINHFKLIFDGIKLPNGHFYSASEGANGELGFFIFSNSEPNPYRVKLRPPCFYALNA 532 Query: 509 LRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 M++G+ ++D+ L +GSL+ DR Sbjct: 533 FSSMVQGSLIADSILNLGSLNIIAGELDR 561 >UniRef50_Q609T9 Hydrogenase subunit n=1 Tax=Methylococcus capsulatus RepID=Q609T9_METCA Length = 527 Score = 467 bits (1201), Expect = e-130, Method: Composition-based stats. Identities = 150/460 (32%), Positives = 226/460 (49%), Gaps = 2/460 (0%) Query: 77 VLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLV 136 V ++ + + ++ +R + + PS TP P A ER RD+ GL +G PD+RR V Sbjct: 69 VNALLEKSGDYLLLRTVLPPGRTGLPSHTPHFPGAARPERHTRDLLGLKFIGHPDDRRWV 128 Query: 137 LPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGH 196 W + +PLR D Q PA T +Y F + G + N +P+GP+H EPGH Sbjct: 129 RHQAWGEREFPLRPDFPLAGQPPAVTAPDRSYGFASAHGPEVNE-IPVGPVHAGIIEPGH 187 Query: 197 FRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSV 256 FR GE +++ + RL YVH+G+EKLA R + L+ RV G H+ A ++ Sbjct: 188 FRFLALGETVLNLEERLGYVHKGIEKLAVGRDP-EGLARLAGRVSGDTTVGHAWAACQAM 246 Query: 257 ENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAE 316 E+A G+ PERA +RAI +E ER+ +HL ++G C+ T F G QF R+RE ++ Sbjct: 247 EHAAGVAPPERALWLRAIFIERERVANHLNDIGAICNDTAFAFGHSQFSRLRELWLRDNL 306 Query: 317 ILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGI 376 G R + GG+ DL + +R E++EL +L + + R VG Sbjct: 307 RWFGHRLLMDRIVPGGVAVDLPAEATSAMPAAMAALRSELEELKPILDESTIFQDRVVGA 366 Query: 377 GRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRIN 436 G L I R+ +G + RA G RD R P Y L ++ + DV +RL VR Sbjct: 367 GVLSERIVRELGCLGYVARACGIGRDVRERAPHAPYDRLGVKAVTRGDGDVAARLYVRYE 426 Query: 437 EVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRW 496 E+ +L+++D L + GPL + T + LG E RG+ + + R+ Sbjct: 427 ELLASLDILDQCLRRIEPGPLRADWRTPPANAEGLGLVEGWRGEIATYVRFDGAGSIVRF 486 Query: 497 RCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 R + NWP L ++ GN V D PL S++ YS D Sbjct: 487 FPRDPSVFNWPALEKLILGNIVPDFPLCNKSVNGSYSGHD 526 >UniRef50_A7I7D0 NADH dehydrogenase (Ubiquinone), 30 kDa subunit n=6 Tax=cellular organisms RepID=A7I7D0_METB6 Length = 526 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 170/538 (31%), Positives = 259/538 (48%), Gaps = 15/538 (2%) Query: 1 MSEEKLGQHYLAALNEAFP-GVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSV 59 M+ + G AA E F G+ A+ + + + V + L V L + LS Sbjct: 1 MTGKDTGAAATAA-QEIFGSGISGRLAYGSSRECILDVNADELDRAVPGLAARNF-VLSA 58 Query: 60 LFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVR 119 LF G Y + YV S + + N+ + S+ P+A W ERE R Sbjct: 59 LFATPVYAGEG-YILRYVFSHAGS-----ILVLSRALNRKQATSIATIFPSATWPERECR 112 Query: 120 DMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDA-ETYEFINELGDKK 178 DMYG+ G D RRLVL + P YPL K + T E Y F GD Sbjct: 113 DMYGIKFEGAFDTRRLVLHETCPAGFYPLEKSVKNAPVATKKTVPPAEEYPFRTVSGDGV 172 Query: 179 NNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSD 238 V P+GP+H EPGHFR V GE + + + RLFY HRG+EKLAE + +++ Sbjct: 173 YQV-PVGPVHAGIIEPGHFRFSVIGETVFNLEIRLFYTHRGIEKLAEGKDPA-ACVRVAE 230 Query: 239 RVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFD 298 V G A++T ++E GI VP+RA IR +L E ER+ SHL +L F Sbjct: 231 AVSGDESAANATGLCMAIERLSGITVPDRAWHIRTVLCESERICSHLGDLSGMLTDVAFA 290 Query: 299 SGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQE 358 G F +RE + E L+G+R G+ L GGI RD+ + + + R+ + +E + Sbjct: 291 LGASHFAVLREEFFREQEKLSGSRFLRGMILPGGISRDIPVETLARYREFLARFAKEFRA 350 Query: 359 LVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPME 418 + ++LSTP++ R G + + + GP+ RASG RD R D P+ Y Sbjct: 351 GLAIVLSTPSVIDRFTQTGIIRKPLLGPLNITGPVARASGSGRDVRVDSPYGMYDRFIPV 410 Query: 419 VHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPR 478 H DV++R V+ EV +L++I+ + +P GP++ + AL E PR Sbjct: 411 PHPLNDGDVLARFTVKAAEVLDSLSLIEKVIAGMPEGPVISADG--VGDGAALALVEGPR 468 Query: 479 GDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 G+++ W + +++R++ R A+Y NW + + GN ++D P+I SL+ Y+ TD Sbjct: 469 GENLCWVEIRE-GRVFRYKVRTASYCNWLAIEHAAPGNIIADFPVINKSLNLSYAGTD 525 >UniRef50_A1AUU6 Ech hydrogenase subunit E n=3 Tax=Bacteria RepID=A1AUU6_PELPD Length = 409 Score = 453 bits (1167), Expect = e-126, Method: Composition-based stats. Identities = 144/382 (37%), Positives = 210/382 (54%), Gaps = 3/382 (0%) Query: 181 VVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 240 +PIGP H EP +F + V GE I+ RL Y HRG+EK E R Y + +L +R+ Sbjct: 5 TIPIGPQHPALKEPANFSITVTGEKIVTTSMRLGYNHRGIEKACEER-SYLQCLYLLERI 63 Query: 241 CGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG 300 CGIC HSTAY +VE G+ +P RA IR+++ E+ER+HSHLL LG+A H GFD+ Sbjct: 64 CGICSHTHSTAYIQAVEEIAGLTIPPRANYIRSLVGELERIHSHLLWLGVAGHEIGFDTL 123 Query: 301 FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELV 360 M +R RE M + L G R YG+N +GG+RRD+ + + R + + + Sbjct: 124 LMYSWRDRELVMDILAELGGNRVNYGINTLGGVRRDITPEQIEMIRNSVNTLEERTKYYI 183 Query: 361 DVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVH 420 +V P + R G+G L E A S VGP +RAS RD R D P+ YG L V Sbjct: 184 EVATEEPTLAARLAGVGYLSHEDALLLSAVGPTLRASNVDRDIRRDDPYAAYGSLDFRVI 243 Query: 421 SEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGD 480 ++ CDV R VR+ E+ + MI L+ LP G + V+ IP A EAPRG+ Sbjct: 244 TDDHCDVYGRTLVRVGELMESFRMIRQILNELPEGEVSVKAPRKIPAGEACSRYEAPRGE 303 Query: 481 DIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTV 540 H+ K R + RA+T+AN + M+ N ++D P+I+ ++DPC+SC DR Sbjct: 304 CFHYIRANGTDKPERVKVRASTFANIQAVAKMMENNNLADVPIIVAAIDPCFSCADRC-- 361 Query: 541 VDVRKKKSKVVPYKELERYSIE 562 +++ + +++ + EL R +E Sbjct: 362 LELLGEGRQLMEWSELRRRGVE 383 >UniRef50_Q1IS59 NADH-quinone oxidoreductase subunit D 1 n=2 Tax=Acidobacteria RepID=NUOD1_ACIBL Length = 381 Score = 451 bits (1160), Expect = e-125, Method: Composition-based stats. Identities = 104/364 (28%), Positives = 170/364 (46%), Gaps = 3/364 (0%) Query: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235 D V+ +GP H ++ L +DGE ++ + + Y+HRG+EK+AE R Y + Sbjct: 19 DSNELVLNMGPQHPSTHGVLRVILKLDGERVLGTECVIGYLHRGVEKIAENRT-YVQFNP 77 Query: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 295 DR+ + ++ Y +VE + +Q P RAQ +R IL E+ RL SH++ LG Sbjct: 78 YVDRMDYVAAVSNGLGYCEAVEKLIDVQAPPRAQFLRVILTELNRLASHMVWLGTHALDI 137 Query: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 355 G + FR RE +K+ E GAR T IGG + + ++ Sbjct: 138 GALTPLFYTFRDREEVLKIFEKYCGARLTTHAFRIGGCIYEAYEGFEKDVLDYCDKLGPR 197 Query: 356 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415 + E +L QRT GIG L+ + GP++RA+G D R P+ Y + Sbjct: 198 IDEYEGLLTGNRIWLQRTKGIGILNAADCKALGVTGPVLRAAGVKWDLRKAQPYAAYDQV 257 Query: 416 PMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLM--VEGFTYIPHRFALGF 473 +V + + D R VR+ E+ ++ ++ ++ LP GP M V P Sbjct: 258 DFDVPTGENGDTFDRYMVRMQEMRQSIRILRQAVEKLPAGPTMAKVPKVLKPPVGRIYHS 317 Query: 474 AEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYS 533 EAP+G+ ++ ++ + + YR R R ++ N L M+RG ++D +IG+LD Sbjct: 318 IEAPKGELGYFIVSDGSLQPYRVRVRPPSFVNLQALDKMVRGALIADVVAVIGTLDIVLG 377 Query: 534 CTDR 537 DR Sbjct: 378 EVDR 381 >UniRef50_Q0F384 Hydrogenase subunit n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F384_9PROT Length = 532 Score = 450 bits (1157), Expect = e-125, Method: Composition-based stats. Identities = 146/536 (27%), Positives = 239/536 (44%), Gaps = 10/536 (1%) Query: 6 LGQHYLAALNEAFPGVVLDHAWQTKDQL----TVTVKVNYLPEVVEFLYYKQGGWLSVLF 61 + Q E + W + + ++ + G L L+ Sbjct: 1 MTQPINTWFVEHLGDCDIHSIWLNDHRPEHMPCLEIRRLDWAHAACEAR-RLGMRLVALW 59 Query: 62 GNDERKLNGH-YAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRD 120 G + + +A+Y ++ +R + A PE PS++ AA ER ++D Sbjct: 60 GAEAGCHDRDAHAMYAYMAFAHPEHRHTLLRTPLAAENPELPSISGHYIAACRMERHMQD 119 Query: 121 MYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNN 180 M+G+ +PD R + + WP E YPLR +D+ RP +A G + Sbjct: 120 MFGIHITDIPDPRPWIKHEHWPREAYPLR---VDFDARPPLLAEAHGDYDYVRSGSEGVY 176 Query: 181 VVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 240 +P+GP+H EPGHFR GE+I++ + RL YVH+G+E+ +++ E ++ R+ Sbjct: 177 EIPVGPVHAGIIEPGHFRFLAVGEHILNMEERLGYVHKGIERAMQSKSA-EEGLKVASRI 235 Query: 241 CGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG 300 G AH+ A+ + E A I VP RA IRAIL E ER+ +H+ ++G C+ F Sbjct: 236 SGDSTVAHAWAFAQACEYAGQIDVPRRASFIRAILCERERIANHIGDIGAVCNDAAFAFM 295 Query: 301 FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELV 360 Q R+RE ++ L G R + GG+ DL + + R+ + EV+ L Sbjct: 296 LHQMHRLREDMARLHLELFGHRLLMNTLIPGGVLVDLGERAIGLLREQTLAIANEVEHLR 355 Query: 361 DVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVH 420 + P+++ R +G G + E A+D +G + RASGH D R + + Y L + V Sbjct: 356 AIYADHPSIQGRVIGSGMVPVEDAQDIGLLGYVGRASGHYPDERIEEAYAPYDELEVNVP 415 Query: 421 SEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGD 480 + DV +R+ VR E+ + +I L+ +P GP++ P E RG+ Sbjct: 416 QGKLGDVATRVWVRFEEIAESSRLISELLEKMPEGPIVANWLPPEPGVSGFAAIEGWRGE 475 Query: 481 DIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 W G+ ++ R R + NW L +R V D PL S + YS D Sbjct: 476 IAAWVRFGEGGQIDRCFVRDPSVINWLGLELAVREVPVPDFPLNNKSFNCSYSGND 531 >UniRef50_Q2K3U2 NADH-quinone oxidoreductase subunit D 2 n=7 Tax=Proteobacteria RepID=NUOD2_RHIEC Length = 404 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 109/404 (26%), Positives = 184/404 (45%), Gaps = 32/404 (7%) Query: 165 AETYEFINELGDKKNN---VVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGME 221 E E G+ N ++ +GP H ++ L +DGE + D + Y+HRG E Sbjct: 2 TEVTELSRPEGEALNTREVLLNLGPQHPSTHGVLRLVLELDGEFVERVDPHIGYLHRGTE 61 Query: 222 KLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERL 281 KLAE+ Y ++ L+DR+ +C +++ A+ +VE +GI+ P RAQ IR ++ E+ R+ Sbjct: 62 KLAES-FTYTQIFPLTDRLDYLCPPSNNLAFALAVEKLLGIEAPIRAQYIRVMMAELARI 120 Query: 282 HSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDD 341 HLL G G + + R RE M + E++TGAR +GG+R DL Sbjct: 121 SGHLLITGALPMDLGAMTALLYVMREREMIMDLLEMITGARMHTSFCRVGGVREDLPDGF 180 Query: 342 MIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHAR 401 + R+ +++ +L RT GIG + E A D GP +RASG Sbjct: 181 FPKIREFCDIFPNRIRDYERLLEDNRVFLNRTKGIGVISAEDAVDLGLSGPNLRASGVDW 240 Query: 402 DTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEG 461 D R D P+ Y L V + D +R + R++E+ ++ +I+ +D +P GP ++ Sbjct: 241 DIRRDEPYEIYDRLDFNVITRDEGDCYARWRCRVDEMRESMRIIEQCIDQMPEGPFQIDM 300 Query: 462 FT----------------------------YIPHRFALGFAEAPRGDDIHWSMTGDNQKL 493 T +P EAP+G+ + ++ + K Sbjct: 301 PTIAFPLDKDRVHCSMEALIQHFDLSAYGFKVPKGEVYSAIEAPKGELGFYIISDGSPKP 360 Query: 494 YRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 +R + RA ++ N L + ++D ++GSLDP + D+ Sbjct: 361 FRMKVRAPSFVNLQALFGVTNARYLADMIAVLGSLDPVMAEVDK 404 >UniRef50_B3DZF5 Formate hydrogenlyase subunit 5 n=8 Tax=Bacteria RepID=B3DZF5_METI4 Length = 535 Score = 447 bits (1150), Expect = e-124, Method: Composition-based stats. Identities = 133/464 (28%), Positives = 222/464 (47%), Gaps = 15/464 (3%) Query: 73 AVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDE 132 VY L G+K + + + ++PSV P+A ER + D++GL G D Sbjct: 86 TVYLALLDRGGSKISL---FGLQVPEGKFPSVAVAYPSAARLERALYDLFGLQAQGSLDS 142 Query: 133 RRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSD 192 R + W +P+ D + + Y F G+ + V P+GP+H Sbjct: 143 RPWLDHGKWGVR-FPMGDSYPDG--------EEKLYSFFPARGESLHQV-PVGPVHAGII 192 Query: 193 EPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAY 252 EPGHFR + GE ++ + RL Y H+G+E L ++ ++ R+ G A++ Y Sbjct: 193 EPGHFRFTMSGEIVVRMEERLGYTHKGIESLFSG-ASIDKGMEIAGRISGDSTVAYAYGY 251 Query: 253 TTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSM 312 +VE A+GI P RA+ IRA++ E+ER+ +H ++G C+ F + +RE + Sbjct: 252 ALAVEEALGISPPPRAEWIRALMAELERMANHFGDVGAICNDAAFPRILSRCALLREKIL 311 Query: 313 KMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQR 372 + A+ G R ++GG++ DL + + + R+L + ++ EV L D S +++ R Sbjct: 312 RCAQSCFGHRLMRDKIVVGGVKEDLNAEGLSRIRELLETIKEEVVCLKDFYDSKNSLQDR 371 Query: 373 TVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLK 432 TVG G LD +A F G + RASG D+R + Y L EV + DV +R+ Sbjct: 372 TVGTGVLDRRLAELFGAGGFIGRASGRNFDSRKAFAYKPYDSLSFEVPVLEDGDVNARVW 431 Query: 433 VRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQK 492 +RI E+ ++ +++ L+ +P G + E L E+ RGD + W N K Sbjct: 432 IRILEIEQSVKLLEQILEGMPPGSICAERIGGEGSGKGLSVVESFRGDILTWIEI-YNGK 490 Query: 493 LYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 + R R ++ WP L ++ G ++D PL S + YS D Sbjct: 491 IIRCHPRDPSWFQWPLLEKVIVGGVIADFPLCNKSFNCSYSGHD 534 >UniRef50_D2RET0 NADH-quinone oxidoreductase, B subunit n=1 Tax=Archaeoglobus profundus DSM 5631 RepID=D2RET0_ARCPR Length = 709 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 138/535 (25%), Positives = 234/535 (43%), Gaps = 27/535 (5%) Query: 20 GVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVLFGNDERKLNGHYAVYYVLS 79 VL T + V+ + E L + + + D + + + + Sbjct: 185 EDVLGVRVYTVGKDHYYAFVDDVKRSAEILAHLGFDNVKDVNVLDVPHEDTFIVEFTLHN 244 Query: 80 MEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPD 139 E +T+ + P+ S++ P++ + ERE+ + +G++ G R L D Sbjct: 245 YENYK--LVTLAKRISRKNPKVESLSDIFPSSDYMEREMHEFFGVVFEGNKWMGRNFLLD 302 Query: 140 DWPDELYPLRKD----------SMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHV 189 +PLRKD + Q D GD+ ++ +GP H Sbjct: 303 V-STPKFPLRKDFRLESQSIEEERPFLQDFDGNLDVTKLPDEFVKGDE--YILVVGPQHP 359 Query: 190 TSDEPGHFRLFV--DGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFA 247 S GH RL V DG+ I D YVHRG+EK+AE+R+ + L +R C Sbjct: 360 GS---GHMRLIVKLDGDIIKDVIPDPGYVHRGVEKIAESRIYIKNIP-LVERPCITDFAN 415 Query: 248 HSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRV 307 + Y ++E A+GI+V ERA+ IR IL E+ R+ +HL + G+ F G +GFM F + Sbjct: 416 YDICYVKAIEEALGIEVSERAKYIRTILAELCRIGTHLYDAGILSIFLGHSTGFMWAFGL 475 Query: 308 RETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTP 367 RE + ILTGAR T + GG+R D+ + + + R++ MRR +++ + + P Sbjct: 476 REFVCEALTILTGARVTGSFIVPGGVRWDVSDEKLRRVREIVLAMRRRLEKFEKMFVKNP 535 Query: 368 NMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDV 427 + R +G L + A++ VGP +RAS D R + Y + +V + + D Sbjct: 536 TVVARLENVGILSKKDAKELGIVGPFLRASNVRHDWRLK-GYEAYDCVDWDVVTAEEGDS 594 Query: 428 ISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTY----IPHRFALGFAEAPRGDDIH 483 +RL VR+ E+ ++ +ID + +LP G V+ + +P + E RG Sbjct: 595 YARLLVRVEEINQSIKIIDQLVRDLPSGETKVDMWKLTDLVLPLGEFVSCVEGARGTIYM 654 Query: 484 WSMTGD-NQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 ++ + YR+R ++ N +G ++D I GS DR Sbjct: 655 SIVSDGESTTPYRFRIVTPSWYNLRGFVEACKGERLADLQAIYGSFGYFPPEADR 709 >UniRef50_B5YKI5 NADH-quinone oxidoreductase subunit D 1 n=12 Tax=Bacteria RepID=NUOD1_THEYD Length = 397 Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 107/390 (27%), Positives = 181/390 (46%), Gaps = 31/390 (7%) Query: 178 KNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLS 237 K V +GP H + L ++GE I + Y+HRG+EKL+E + Y + ++ Sbjct: 9 KELTVNMGPQHPATHGVLRLVLELEGEVIKKCIPYIGYLHRGVEKLSED-LTYVQSLPIT 67 Query: 238 DRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGF 297 DR+ + ++ + +VE MGIQ+PERA+ IR I+ E+ R+ SHL+ + G Sbjct: 68 DRMDYLSSMVNNVGFCVAVEKLMGIQIPERAKFIRTIMGEMARICSHLVWIATHALDIGA 127 Query: 298 DSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQ 357 + F+ R RE +++ E++TGAR T +GG+R D+ + + +T + ++ R+V+ Sbjct: 128 MTVFLYAMRDREYLLELFEMVTGARLTVSYPRVGGVRCDVNNEFLDKTYKFIEEFPRKVE 187 Query: 358 ELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPM 417 E ++ +RT G+G + E A ++ GP +R SG D R P+ Y + Sbjct: 188 EYETLIDRNRVWLKRTKGVGVISAEEAINWGLTGPTLRGSGVYYDVRKFFPYDAYDKVDF 247 Query: 418 EVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYI--PHR------- 468 EV + D+ R K R+ E + +I ++ LP G ++ E I P Sbjct: 248 EVPLGKNGDIYDRYKCRMLEFRQSAKIIKQCIERLPDGSILAENALRIRMPESPLKIDKK 307 Query: 469 ---------------------FALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWP 507 EAPRG+ + + ++ K YR R RA ++ + Sbjct: 308 DIIFDVYIEDKQIQEFIQKFTEVYASVEAPRGELGFYIVCDNSSKPYRMRVRAPSFVHAG 367 Query: 508 TLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 L + G+ V+D IGS+D DR Sbjct: 368 VLPKLCEGSLVADVIANIGSIDIVLGECDR 397 >UniRef50_C0Z770 NADH-quinone oxidoreductase chain D n=2 Tax=Bacillales RepID=C0Z770_BREBN Length = 382 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 101/362 (27%), Positives = 180/362 (49%), Gaps = 4/362 (1%) Query: 178 KNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLS 237 + ++ +GP H ++ + +DGE I +A + Y+HRG EKLAE + Y ++ + Sbjct: 21 EEMLLNVGPQHPSTHGVFRLVVKIDGETIKEAIPVMGYLHRGTEKLAEN-LTYTQIIPYT 79 Query: 238 DRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGF 297 DR+ + ++ +VE MG+++PERAQ +R I +E+ R+ SHL+ G G Sbjct: 80 DRMDYVSAMTNNYVLCHAVETMMGLEIPERAQFLRLIAMELNRVASHLVWWGTFLLDIGA 139 Query: 298 DSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQ 357 F+ FR RET + + L GAR T+ +GG++ D + + ++ Q M++E+ Sbjct: 140 MGPFLYAFRDRETILDLFNELCGARMTFNYMRVGGVKWDAPPGWVDKAKEFVQYMKKELN 199 Query: 358 ELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPM 417 ++ R +GIG+ D + A D+S G M+R++G D R D P+ Y Sbjct: 200 NYHQLVTGNEIFINRLIGIGKFDTKTALDYSLSGVMLRSTGVKWDLRKDEPYCIYDRFEF 259 Query: 418 EVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLP-GGPLM--VEGFTYIPHRFALGFA 474 +V + D ++R +R+ E+ +L +++ L+ P G +M V P Sbjct: 260 DVPTATEGDCMARYHLRMAEIEQSLRILEQALEQFPSEGEVMGKVPRVIRPPAGETYVRI 319 Query: 475 EAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSC 534 E+PRG+ + + K +R + R ++ N L +L+G +S+ I+GS+D Sbjct: 320 ESPRGEIGCYIASQGKDKPWRLKFRRPSFTNLQILPKLLQGENLSNMVAILGSIDIVLGE 379 Query: 535 TD 536 D Sbjct: 380 VD 381 >UniRef50_B8J7E4 NADH-ubiquinone oxidoreductase chain 49kDa n=14 Tax=Bacteria RepID=B8J7E4_ANAD2 Length = 521 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 132/499 (26%), Positives = 214/499 (42%), Gaps = 16/499 (3%) Query: 38 KVNYLPEVVEFLYYKQGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDAN 97 + E+V + + GG L+ LFG G V VL+ + + + DA Sbjct: 38 EPARFNEIVLAAH-RGGGRLAALFG--RPDAGGGVLVTAVLADDPEGRLALLATRVADA- 93 Query: 98 KPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQ 157 +PS+ +PAA ERE+ + +GL P G P + L P R + + Sbjct: 94 ---FPSIAAELPAAQAFERELAEQWGLRPEGHPWLKPLRF-------EPPRRAAPDPFGR 143 Query: 158 RPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVH 217 + T Y F G++ + V +GP+H EPGHFR GE + + L Y H Sbjct: 144 QDPRATIPGEYPFFRVEGEEVHEVA-VGPVHAGIIEPGHFRFQCHGERVFHLEIVLGYQH 202 Query: 218 RGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLE 277 RG+E+L + L++ + G H AY +VE+ G+ RA +R I LE Sbjct: 203 RGVERLLRGGPDRRSMA-LAESIAGDTAVGHGLAYAKAVESLAGVAPTARAMSLRGIGLE 261 Query: 278 VERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDL 337 +ER+ +H+ +LG GF +R + + G R L GG++ DL Sbjct: 262 LERIANHVGDLGALAGDVGFLPTASYCGALRAEFLNAVAEICGNRFGRSLVCPGGVKHDL 321 Query: 338 LKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRAS 397 + + + + ++ +P++ R G G + +A+ VGP RAS Sbjct: 322 DAEAARALAARVRAAWEKTRRAASLMFESPSVRARFEGTGTVPTALAQALGMVGPAARAS 381 Query: 398 GHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPL 457 G RD R DH F Y + V + + DV++R +R+ E ++ + L+ LPGGP Sbjct: 382 GVDRDVRRDHAFGIYRFSHVAVTTAENGDVLARALIRLLEAERSVEFVLDQLERLPGGPS 441 Query: 458 MVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNT 517 P + E RG+ H ++T +L ++ + ++ NW L LR Sbjct: 442 RTAPGPLAPGALVVSMVEGWRGEIAHVAVTDAQGRLEAYKVKDPSFHNWFGLAMALRDGQ 501 Query: 518 VSDAPLIIGSLDPCYSCTD 536 +SD PL S + Y+ D Sbjct: 502 ISDFPLCNKSFNLSYAGHD 520 >UniRef50_B6AS24 Putative NADH-ubiquinone oxidoreductase, 49 kDa subunit n=2 Tax=Leptospirillum sp. Group II RepID=B6AS24_9BACT Length = 499 Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 144/484 (29%), Positives = 215/484 (44%), Gaps = 19/484 (3%) Query: 53 QGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAV 112 +GG L+G D + +V + G +R V +PS+T P A Sbjct: 34 RGGRFVSLWGTDHPE-------GFVYAALAGPDGLFVLRSPVSKESGTFPSLTALFPLAS 86 Query: 113 WGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFIN 172 ER VRD+YG IP GL D R + DD + Y F+ Sbjct: 87 RPERAVRDVYGWIPEGLSDTRPWIRQDDHGGHGSGKERSP----------EGGRDYPFVR 136 Query: 173 ELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNE 232 G+ + +P+GP+H EPGHFR V GE ++ + RL Y H+G+ L R + Sbjct: 137 VDGEGVHE-IPVGPVHAGIIEPGHFRFQVVGEKVLRMEERLGYTHKGIRGLLAHR-PVGD 194 Query: 233 VTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLAC 292 VT LS R+ G A A+ +VE A PERA +RAILLE ER+ +HL +LG Sbjct: 195 VTRLSSRISGDSAVAFQWAWAQAVECATQTSPPERAVWLRAILLERERIANHLGDLGALG 254 Query: 293 HFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQM 352 + GF G +QF R++E ++ + G R GG+ D + + R ++ Sbjct: 255 NDAGFAFGLVQFGRLKEDLLRTNGQIFGHRYLMDTICPGGVAVDPGDGALSRLRSELPRL 314 Query: 353 RREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGY 412 + E+ L + ++ R G G LDP +A + G + RASG D R DHP Y Sbjct: 315 QEEIHVLKTIYDEHGGLQDRFAGTGVLDPLLAGAWGLGGVVGRASGQLLDLRHDHPVRPY 374 Query: 413 GLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALG 472 + + V + DV +R++VR E+ +L ++ L + P GP P G Sbjct: 375 DIERVPVALAKRGDVGARVQVRFQEIRHSLAFLESVLASFPPGPARRGLVCRSPKAEGFG 434 Query: 473 FAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCY 532 + E RG+ + W + + ++ WP L + GN V+D PLI S + Y Sbjct: 435 WIEGFRGEVLAWVRLDRDGNVEDAHFHDPSWLLWPALERAVPGNLVADFPLINKSFNLSY 494 Query: 533 SCTD 536 S D Sbjct: 495 SGHD 498 >UniRef50_A8A9X2 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 Tax=Ignicoccus hospitalis KIN4/I RepID=A8A9X2_IGNH4 Length = 540 Score = 440 bits (1133), Expect = e-122, Method: Composition-based stats. Identities = 145/544 (26%), Positives = 237/544 (43%), Gaps = 30/544 (5%) Query: 18 FPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVLFGNDERKLNGHYAVYYV 77 F G V W + L V V+ Y E L + + S+L D V+++ Sbjct: 3 FVGEVERKEW--SNALYVEVEPQYWYENAARLKDQGYLFPSMLTAVDW-PAEKKVQVFFL 59 Query: 78 LSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRL-- 135 + + + + +VD E PS++ P W E E +M+G+ G PD R Sbjct: 60 VHRIRDAS-SVVLSTKVDRENRELPSLSSLYPGVEWHENETYEMFGINFTGHPDYERWGR 118 Query: 136 ----VLPDD---WPDELYPLRKDSMDYRQ-RPAPTTDAETYEFINELGDKKNNVVPIGPL 187 +L +D +P + +PL KDS Y+ + E + E + V +GP Sbjct: 119 IRKLLLSEDPRLFPKDRFPLLKDSGGYKDLPKVNWAEIEGTDQEREGLREDLTYVYVGPQ 178 Query: 188 HVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFA 247 H + P F L + GE + D RL YVHRG+E + E + Y +V L DR C I G Sbjct: 179 HPATHGPVGFLLGLKGEIVEDVIPRLGYVHRGVEWIYEQKE-YLKVIPLLDRQCYIDGIG 237 Query: 248 HSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRV 307 Y ++E M ++V RAQ++R + E+ R+ SHLL +G + F R Sbjct: 238 WEWPYVMALEEIMDVKVDRRAQLLRILAAELSRIQSHLLYIGSFAENVNHLTAFAWTVRD 297 Query: 308 RETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTP 367 RE + + E+LTG R T+ GG+ DL + ++ + + ++L++ L P Sbjct: 298 REVFINLLEMLTGQRMTFNYLRPGGVAFDLPQGFKDVYEKVVARFHKHFEKLIETTLDNP 357 Query: 368 NMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGL-LPMEVHSEQGCD 426 + R G+ ++ E A + GP +RASG A D R + P+ GY + E D Sbjct: 358 TVAMRAEGVAQVSAEDAIKYGWSGPNLRASGVAWDLRINKPYGGYDDGIDFEGAVGSVGD 417 Query: 427 VISRLKVRINEVYTALNMIDYGLDNLPGGP--------LMVEGFTYIPHRFALGFAEAPR 478 + R+ VR E+ +L +I L L V F P A G+ ++PR Sbjct: 418 NLDRMLVRFEEIRQSLKIIRQVLRELTERGQNELGTHLKRVPPFPRKP-GIAYGYHDSPR 476 Query: 479 GDDIHWSMTGDN-----QKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYS 533 G++ + + + +R R+ + + +L+Y+ +G + D SLD C + Sbjct: 477 GENGILLVANPSDPKWRTRPWRVHMRSPVFVHTMSLKYLGKGLLLQDFLAFYISLDTCVA 536 Query: 534 CTDR 537 DR Sbjct: 537 EMDR 540 >UniRef50_Q979M3 NADH dehydrogenase I chain D n=6 Tax=Thermoplasmatales RepID=Q979M3_THEVO Length = 369 Score = 440 bits (1131), Expect = e-122, Method: Composition-based stats. Identities = 93/367 (25%), Positives = 173/367 (47%), Gaps = 7/367 (1%) Query: 177 KKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFL 236 ++ V GP H + ++ +DGE + D + + Y+HR EK+ E + + + + Sbjct: 4 EEWTEVNFGPQHPSMHGVLRLKVKLDGEIVKDVEPIIGYLHRNAEKICELQFYCDNMIYF 63 Query: 237 SDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTG 296 DR+ + Y + E + ++ P RA+ IR ++ E+ R+ SHL+ LG G Sbjct: 64 -DRMDYVAAMNMEIGYLEAAEKLLDVEPPGRAKWIRVMMGELNRIASHLVWLGAFGLDLG 122 Query: 297 FDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREV 356 + F F+ RE +K+ ++G+R+ IGG+ +D+ + + +Q + +E+ Sbjct: 123 MLTPFFYCFKEREKILKIFTEVSGSRQQLNYMSIGGVYQDVTDEALDHIKQFITEFPKEL 182 Query: 357 QELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLP 416 + ++ + RT G+G L E+A D+ GPM+RASG D R P++ Y + Sbjct: 183 NMIANLFVKNDIFLSRTKGVGILSKEMAIDYGVTGPMLRASGVEYDVRKAEPYLVYDKVN 242 Query: 417 MEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYI------PHRFA 470 ++ D ++R VRI E+ ++ +ID + LP GP + Sbjct: 243 FDIPVSFKGDNLARFLVRIEEMRQSVKIIDQTIQKLPAGPYFNQKAKKPLMIRLRGQGEV 302 Query: 471 LGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDP 530 E+P+G+ + + + + YR R R+ T+ N L + +G ++D I GS+D Sbjct: 303 YARTESPKGEFGVYIVGDGSLRPYRVRVRSPTFKNLSVLPALAKGQMIADLISIGGSIDL 362 Query: 531 CYSCTDR 537 + DR Sbjct: 363 VFGEVDR 369 >UniRef50_C0QBF7 HyfG n=3 Tax=Bacteria RepID=C0QBF7_DESAH Length = 503 Score = 440 bits (1131), Expect = e-122, Method: Composition-based stats. Identities = 119/450 (26%), Positives = 199/450 (44%), Gaps = 19/450 (4%) Query: 89 TVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPL 148 +V V P + S+TP P ERE+ + + ++P G P + + Sbjct: 70 SVEVVAADTDPAFQSLTPDCPQVQAFEREIYEQWNVLPQGHPWLKSV------------- 116 Query: 149 RKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIID 208 + A T +F + G++ + V +GP+H EPGHFR GE + Sbjct: 117 -RSHPPVVAAHGKAAHAGTTDFFSIDGEEAHEVA-VGPVHAGIIEPGHFRFQCHGETVYH 174 Query: 209 ADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERA 268 + L Y HRG+E + + + + + G H TA +E GI VP R Sbjct: 175 LEISLGYQHRGVEPALKDGPDKRTLHYF-ETLAGDTSIGHGTAGCCMIEALAGIDVPPRG 233 Query: 269 QMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLN 328 Q IRAI E+ER+ +H+ +LG GF R+R ++ + ++ G R GL Sbjct: 234 QAIRAIAAELERIANHIGDLGAISGDVGFLPTMSYCGRIRGDALNLTAMICGNRFGRGLV 293 Query: 329 LIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFS 388 + GG D+ + + ++ + ++++L+TP++ R G++ + AR+ Sbjct: 294 IPGGTAWDITHAQTGELLRRLDEIHADAHSAIELMLNTPSVLARLENTGQVPTQTAREIG 353 Query: 389 NVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYG 448 VG RASG +D R HP+ Y L P+ V + + D ++R ++R E+ + I Sbjct: 354 LVGLAARASGLKQDVRTSHPYENYRLTPLPVITRKTGDCLARAQIRWGEIQASFKFIRTL 413 Query: 449 LDNLPGGPL--MVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANW 506 L +LPGG + + EG P + A E RG+ H + T K ++ ++ NW Sbjct: 414 LADLPGGEVANLWEG-KLPPQKMATILVEGWRGEICHTAATDSAGKFSFYKIVDPSFHNW 472 Query: 507 PTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 + LR +SD PL S + Y D Sbjct: 473 FGVSLALRNQQISDFPLCNKSFNLSYCGHD 502 >UniRef50_C6NX38 Ni,Fe-hydrogenase III large subunit n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NX38_9GAMM Length = 527 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 136/486 (27%), Positives = 218/486 (44%), Gaps = 10/486 (2%) Query: 51 YKQGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPA 110 +QGG L ++G + + + + + W T+ + AN E+PS++ P Sbjct: 51 RQQGGRLLGIWGEHQDTAGANI---HAFFLTESGYLWCTL--PLPANLREFPSLSSVFPT 105 Query: 111 AVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEF 170 A ER +RD+ GL P+G PD R + WP ++PL D + Y + Sbjct: 106 ACRQERAIRDLLGLEPLGNPDMRPWLRHAAWPANIHPLAMS--DIPEDILSCAGEIDYSY 163 Query: 171 INELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGY 230 G + +P+GP+H + EPGHFR GE I+ + RL Y H+G+E+L + Sbjct: 164 RAPAGQDLHE-IPVGPVHAGTIEPGHFRFTCLGEQIVQLEERLGYCHKGIERLFVGQPP- 221 Query: 231 NEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGL 290 + L+ RV G A++ +Y +VE+ I++ +RA +R + LE ERL +HL +LG Sbjct: 222 DAALRLAGRVSGDSSVAYAWSYAMAVESVAEIELSQRALALRGLCLERERLANHLGDLGA 281 Query: 291 ACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQ 350 + G Q ++E ++ + G R + +GG+ DL + Q ++ Sbjct: 282 LGNDAGLAFALTQLLAIKEELLRENAEIFGHRYLMDVVQLGGVAVDLDGRALQHIEQSSK 341 Query: 351 QMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFV 410 RR ++ L +L + R V G + E A + G RASG A D R Sbjct: 342 AWRRRLETLDLLLQEHAGLRDRLVATGPITAERAAYWGMAGLSGRASGQAWDLRTHFAPP 401 Query: 411 GYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFA 470 Y PME+ + DV +R VR EV+ L + + NLPGG V + Sbjct: 402 PYDRYPMEISLARRGDVAARWAVRFAEVFRCLRWQENVVANLPGGSPRVALKAFPKDGEG 461 Query: 471 LGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDP 530 LG E RG+ ++ + R +++ WP L + + V+D PLI S + Sbjct: 462 LGICEGWRGEVFVALRL-EDGHIARCHPHDPSWSLWPVLEEAVCQDIVADFPLINKSFNL 520 Query: 531 CYSCTD 536 YS D Sbjct: 521 SYSGQD 526 >UniRef50_C7NUN7 NADH dehydrogenase (Quinone) n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NUN7_HALUD Length = 419 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 130/395 (32%), Positives = 209/395 (52%), Gaps = 8/395 (2%) Query: 175 GDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVT 234 D +P+GP H + EP +F L VDGE I AD +L Y HRG+E+ ++ + Sbjct: 3 EDVSGTEIPVGPQHPSLKEPANFTLTVDGEVITGADLKLSYNHRGIEQAVLSKSYLENI- 61 Query: 235 FLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHF 294 +L +R+CGIC AH+T++ VE+ + + VP RA IR ++ E+ER+HSH+L LG+A H Sbjct: 62 YLLERICGICSHAHTTSFAIGVEDLLDLDVPRRANYIRTLIGELERIHSHMLWLGVAGHE 121 Query: 295 TGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRR 354 GFD+ + +R RE + + E +TG R Y +N IGG+R+DL + + ++ Sbjct: 122 IGFDTLWQYAWRDREIVLDLLEEITGNRIHYSINTIGGVRQDLTAEQRETVLEKMDELEE 181 Query: 355 EVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGL 414 + ++ + + + R +G + E+AR++ GP+ RASG D R D P+ Y Sbjct: 182 RIDFYLETVPNEETVRMRCENVGTVSAELAREYCAAGPVGRASGLPVDVRRDAPYAAYDE 241 Query: 415 LPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFT------YIPHR 468 + +V ++ D+++R VRI E+ ++++I ++P G L IP Sbjct: 242 MDFDVITDTAGDLLARTTVRIREIAESISIIRQAAADIPDGDLKASPKPVQALLAQIPED 301 Query: 469 FALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSL 528 + EAPRG+ IH+ R R T ANWPT+ LRG+ ++D P+++ + Sbjct: 302 DVVSRYEAPRGELIHYIRADGTDTPERVHIRVPTLANWPTVVEALRGSYIADTPIVVAGI 361 Query: 529 DPCYSCTDRMTV-VDVRKKKSKVVPYKELERYSIE 562 DPC SCT R+ V D +EL Y +E Sbjct: 362 DPCISCTSRIGVETDGSHGGEDSFNLEELREYGME 396 >UniRef50_C6PUG2 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PUG2_9CLOT Length = 526 Score = 438 bits (1126), Expect = e-121, Method: Composition-based stats. Identities = 132/531 (24%), Positives = 239/531 (45%), Gaps = 11/531 (2%) Query: 11 LAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVLFGND---ERK 67 + E + + + K+++ V V+++++ ++ K F D E Sbjct: 3 IDLFKEELSNLKYNSEIKNKNEIYVDVEISHVKSLISLFLVKYKLKFIAQFCVDNSNEEN 62 Query: 68 LNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPV 127 + + +LS K + ++ VR + + + + ERE+ D++GL Sbjct: 63 AQNDFMINIILSNSKK-RYFVIVRYKTQEE---IKTFQDILFQSHLFEREMCDLFGLKIK 118 Query: 128 GLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPL 187 D R++V + WP+++YPLRK Y + + Y+ GD + +GP+ Sbjct: 119 DGIDTRKIVKHEKWPEDVYPLRKSF-PYGAKLEEKNEILPYKCKEAFGDGAYQ-ISVGPV 176 Query: 188 HVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFA 247 H EPGHFR V GE I + + RL Y HRG+EK+ E + +++ + +R+ A Sbjct: 177 HAGIIEPGHFRFSVIGEAIENLELRLNYKHRGIEKICEN-VDASKLNLVFERMACESSAA 235 Query: 248 HSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRV 307 ++ +Y VE + P+ + +R +LLE+ER+++ L ++ C GF +F Sbjct: 236 YAESYALLVEKLLSYDTPQEIKALRVVLLELERIYNFLGDISGICVDIGFSYPAKRFGAF 295 Query: 308 RETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTP 367 E K+ E +TG+R + + GI D K+ + ++ M++ + +++++ L + Sbjct: 296 GEQIHKLCERITGSRFMRNVIIPCGINIDFTKEHIEDIKKTLNGMKKRMDKIIEITLDSV 355 Query: 368 NMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDV 427 + R G + + A+ G RASG D R P+ YG+L ++ + V Sbjct: 356 SFLDRVENTGIVRNKTAKKLYMTGITGRASGINYDVRKSFPYEIYGILKKNNNTLEIGGV 415 Query: 428 ISRLKVRINEVYTALNMIDYGLDNLPGGPLMVE-GFTYIPHRFALGFAEAPRGDDIHWSM 486 R K++I E+Y A N I LD + L + F + AL E +G+ I + Sbjct: 416 FERYKLKIKEIYDAYNFIFASLDFINKDILKTKTEFKLVEETEALAAVETVKGELIVYGK 475 Query: 487 TGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 G + K R + + NW L Y + G V D PL S + YS D+ Sbjct: 476 VGKDNKFNRIYFKTPSVTNWNGLTYAVLGEIVPDFPLCNKSFNMSYSENDK 526 >UniRef50_B2HHH7 Formate hydrogenase HycE n=3 Tax=Actinomycetales RepID=B2HHH7_MYCMM Length = 498 Score = 437 bits (1123), Expect = e-121, Method: Composition-based stats. Identities = 151/507 (29%), Positives = 235/507 (46%), Gaps = 24/507 (4%) Query: 36 TVKVNYLPEVVEFLYYKQGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVD 95 TV L E V L +G L+++ +D+ VY +++ + + +T+R Sbjct: 9 TVSDAELAESVAEL-LAEGYRLALVAAHDDGDALR--VVYLLVAGQPDRRVELTLRTG-- 63 Query: 96 ANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDY 155 A P PS+ A ERE+ D+YG+ PVG P RRLV WP + +P+R+D+ D Sbjct: 64 AANPSVPSLAELSIPAGRFEREMMDLYGISPVGHPQPRRLVRHAHWPQDWHPMRRDAGD- 122 Query: 156 RQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFY 215 P P + F+ G +P+GP+H EPGHFR V GE+I+ RL++ Sbjct: 123 ---PPPFDAVGRFPFVTVEGPGVYE-IPVGPVHAGLIEPGHFRFSVIGESILRLKARLWF 178 Query: 216 VHRGMEKLAETRMGY--NEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRA 273 VHRG+EKL E R E L++R+ G AHS A+ +VE+A+G+ VPE +RA Sbjct: 179 VHRGVEKLFEGRNALGAREAVELAERISGDSSAAHSLAHCLAVEDALGLDVPEPVHRLRA 238 Query: 274 ILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGI 333 +L+E+ERL++H+ +LG + GF +RE +++ +TG R GG+ Sbjct: 239 LLVELERLYNHVTDLGALANDVGFALANAHAQGIRERVLRINRRVTGHRLLRAAMAPGGV 298 Query: 334 RRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPM 393 L D + EV E+ ++ L + R L E AR +G + Sbjct: 299 VLQELPDPAE-----LHAVAAEVAEISELTLRNSVVYDRFAETAVLHSEDARALGCLGYV 353 Query: 394 VRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLP 453 RASG A D R DHP LP+ + G DV++R +R +E ++ + + ++N Sbjct: 354 ARASGIATDARLDHPTA---ELPVTAVAAGGGDVLARYTIRRDEFAASVALACHLVENHH 410 Query: 454 G----GPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTL 509 G P +G E RG +H ++ R + ++ NWP L Sbjct: 411 GRTRFAPPPAANGARSAVTSGVGIVEGWRGAVLHRVEVDGAGRITRCKIVDPSWFNWPAL 470 Query: 510 RYMLRGNTVSDAPLIIGSLDPCYSCTD 536 + V D PL S + Y+ D Sbjct: 471 PVAMADTIVPDFPLANKSFNLSYAGND 497 >UniRef50_A8VSQ7 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=2 Tax=Firmicutes RepID=A8VSQ7_9BACI Length = 371 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 106/364 (29%), Positives = 179/364 (49%), Gaps = 6/364 (1%) Query: 178 KNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLS 237 ++ + +GP H ++ +L VDGE I A + Y+HRG EKLAE + Y + + Sbjct: 8 ESMTLNMGPQHPSTHGVFRLQLEVDGETIQKATPIMGYLHRGSEKLAEGFL-YTQFIPYT 66 Query: 238 DRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGF 297 DR+ + ++ Y ++E + +VPERA+ +R I +E+ R+ SHL+ G G Sbjct: 67 DRLDYMNAMTNNYVYCQTIEKLLDWEVPERAEYLRVITMELNRIASHLVWWGTYLLDIGA 126 Query: 298 DSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQ 357 S F+ FR RET + ++GAR T+ + IGG++ D + + + ++++ + Sbjct: 127 MSPFLYAFRDRETILDRLNEISGARMTFNYHRIGGVKWDAPEGWIDNVLETVEELKHNIS 186 Query: 358 ELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPM 417 E ++ + RT+G+G L E ++ GP+ R SG D R P+ Y Sbjct: 187 EFDTLVSGNEVFQARTIGVGVLSKEKVLNWGLSGPLARGSGVEVDVRKTEPYSVYDHFDF 246 Query: 418 EVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLM-----VEGFTYIPHRFALG 472 +V EQ DV +R KVRI E++ +L +I+ NLP G ++ P Sbjct: 247 DVPVEQEGDVYARYKVRIREMHESLKIIEQACKNLPEGDIIHKKGKKIMMIKPPEGEVYT 306 Query: 473 FAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCY 532 AEA +G+ ++++ K YR + R ++ N L+ ML G ++ + I GSLD Sbjct: 307 RAEASKGEIGVYAISNGKNKPYRVKLRRPSFVNVSILQDMLIGESIQNLVAIFGSLDVVL 366 Query: 533 SCTD 536 D Sbjct: 367 GEVD 370 >UniRef50_B9L172 NADH dehydrogenase I, D subunit n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L172_THERP Length = 409 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 114/405 (28%), Positives = 182/405 (44%), Gaps = 29/405 (7%) Query: 161 PTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGM 220 T E ++ V+ +GP H ++ RL ++GE +I D + Y+HRG+ Sbjct: 6 QPTPVILSEVRQITPTRRELVLNMGPQHPSTHGVLRVRLTLEGETVIACDPVIGYLHRGV 65 Query: 221 EKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVER 280 EKL E+ Y + +DR + +++ Y +VE GIQ PERAQ R I+ E+ R Sbjct: 66 EKLGESHR-YAQFVPWTDRTDYVAAPSNNLGYVLAVEKLCGIQAPERAQYWRMIMAELTR 124 Query: 281 LHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKD 340 + SHL+ LG G S + FR RE + + E GAR T + IGG R++ D Sbjct: 125 IASHLVWLGTHALDIGALSVSLYTFRDRELILDIFEKFCGARLTTNMMEIGGFSREIPPD 184 Query: 341 DMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHA 400 R+ + + +++ D+L P RT G+G ++P++A ++ G +R SG Sbjct: 185 LPEMVREFCRYFPKAIRQYEDLLTENPIWLARTKGVGVIEPDVAINYGLTGACLRGSGVN 244 Query: 401 RDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLP-GGPLMV 459 D R P++ Y + EV DV R VRI E+ AL +I+ L+ +P GPLM Sbjct: 245 YDVRKAMPYLLYDRVEFEVPLGTHGDVYDRYLVRIEEMRQALRIIEQCLEQVPTDGPLMA 304 Query: 460 EGFTY---------------------------IPHRFALGFAEAPRGDDIHWSMTGDNQK 492 Y P E +G+ ++ ++ + Sbjct: 305 YESPYVIPPHKTVMTTAEDMQRHFIWVIKGFSPPKGEVYHAVEHSKGELGYYIVSDGSPI 364 Query: 493 LYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 YR R R + N +L YM +G ++D +IG++D DR Sbjct: 365 PYRVRIRTPDFVNLQSLPYMAQGAMLADIVALIGTIDIVLGSVDR 409 >UniRef50_Q3ZW31 Hydrogenase, group 4, HycE subunit n=3 Tax=Dehalococcoides RepID=Q3ZW31_DEHSC Length = 526 Score = 435 bits (1118), Expect = e-120, Method: Composition-based stats. Identities = 138/485 (28%), Positives = 231/485 (47%), Gaps = 8/485 (1%) Query: 52 KQGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAA 111 + G L LFG + + ++ Y+ + + +R S+ P+A Sbjct: 49 EDGFGLIGLFGVEGFRGYQGLSLLYIFEKRNYSGTLVIIR----RADSPVSSIAAIFPSA 104 Query: 112 VWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFI 171 + ERE+RD YG D RRL L + +P +PL + + E Sbjct: 105 CYFEREIRDGYGCEFENAFDRRRLFLHETYPANFHPLANSFKNQPLSLPAGVENEALYPF 164 Query: 172 NELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYN 231 ++ + V +GP+H EPGHFR GE I++ + RLFY HRG+EKLA + + Sbjct: 165 KKISGEGVYEVGVGPVHAGIIEPGHFRFSAIGEPILNLEVRLFYTHRGLEKLAMGK-DID 223 Query: 232 EVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLA 291 +++ + G A++ AY+++VE+ + P RA+ +R ILLE+ERL+SHL +L Sbjct: 224 FGLKIAEGISGDESAANTYAYSSAVEHICSSRPPRRAEQLRLILLEMERLYSHLADLSGM 283 Query: 292 CHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQ 351 G+ G +RE M+ + LTG+R G+ GG+ +D+ + + + Sbjct: 284 LTDVGYPVGAASLSALREELMRWNKRLTGSRFLKGIIAPGGLLKDIPGELITELADYLYA 343 Query: 352 MRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVG 411 E V+ L+ ++ R G ++ + + G RASG A DTR + P+ Sbjct: 344 FEGRFSEQVEKALAKTSVVDRFETTGIVNNRLLIPLNITGVTARASGEAIDTRLNQPYGF 403 Query: 412 YGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFAL 471 Y L ++ DV++R +VR++EV T+L +I L G + + ++L Sbjct: 404 YPELSFKLPVLPEGDVMARFRVRLSEVQTSLGLILKTAAKLSAGEYAIPLKPV--NGYSL 461 Query: 472 GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPC 531 E+PRG +HW D K+ R++ R A+Y NW + + + G+ + D PLI SL+ Sbjct: 462 VLVESPRGQSLHWLWLRD-GKIERYKVRTASYCNWQAIEHAVLGDIIPDFPLINKSLNLS 520 Query: 532 YSCTD 536 Y+ TD Sbjct: 521 YAGTD 525 >UniRef50_Q2S5J0 NADH-quinone oxidoreductase subunit D n=5 Tax=Bacteria RepID=NUOD_SALRD Length = 451 Score = 435 bits (1118), Expect = e-120, Method: Composition-based stats. Identities = 106/432 (24%), Positives = 188/432 (43%), Gaps = 36/432 (8%) Query: 141 WP---DELYPLRKDSMDYRQRPAPTTDAETYEFINELGD----KKNNVVPIGPLHVTSDE 193 WP +++Y ++ + + + + + + ++ IGP H + Sbjct: 21 WPKHNEKIYERLENKHAWLEEKRAAAQGDGKPPATQRSEVDPLENEMILNIGPQHPATHG 80 Query: 194 PGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYT 253 + +DGE I + + Y+HRG+EKLAE + Y E +DR+ + ++++ A+ Sbjct: 81 VLRCVVKMDGETIEKSVLDIGYLHRGIEKLAEHKT-YQEFMPYTDRMDYLSPYSNNVAWC 139 Query: 254 TSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMK 313 +VE I+VPERAQ IR I+ E+ R+ SH L LG+ G SGF+ F+ RE Sbjct: 140 LAVEKLADIEVPERAQWIRMIMSELARISSHCLWLGVGMMDAGAVSGFVWTFQEREEIYS 199 Query: 314 MAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRT 373 + + + GAR T + IGG+ D + R + +L +R Sbjct: 200 IMDEVAGARFTVSHSRIGGVANDFSPRAIEMIRDFVDTFPDRIAGWEGLLNKNRIWVERN 259 Query: 374 VGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKV 433 G+GR+ E A + GP +R SG D R P++ Y + + + D ++R + Sbjct: 260 KGVGRVTKEEALELGLTGPNLRGSGVPYDVRRFEPYLKYDEVDFTIPVREEGDCLARYFL 319 Query: 434 RINEVYTALNMIDYGLDNLPGGPLMVE----------------------------GFTYI 465 R++E+ ++ +I+ LD + GP+ + G Sbjct: 320 RLDEMKQSVRIIEQCLDRMTEGPIRSDDAKEAYPSKEEVYYSMEGMIHDFMYTDVGTVPP 379 Query: 466 PHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLII 525 + E P+G+ + + + +R R A ++ N + +ML G V+D +II Sbjct: 380 KGAHSYHAIEGPKGELGFYLTSDGTGRPWRVRINAPSFTNLQAMEHMLEGEMVADTVVII 439 Query: 526 GSLDPCYSCTDR 537 GSLDP D+ Sbjct: 440 GSLDPVMGEADK 451 >UniRef50_C9LVK3 Proton-translocating NADH-quinone oxidoreductase, D subunit n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LVK3_9FIRM Length = 365 Score = 435 bits (1118), Expect = e-120, Method: Composition-based stats. Identities = 98/365 (26%), Positives = 171/365 (46%), Gaps = 3/365 (0%) Query: 174 LGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEV 233 + +K ++ +GP H ++ L + GE I A L Y+HRG+EKL E+R Y + Sbjct: 1 MAEKSTYILNMGPQHPSTHGVLQVELELSGERIERAKPILGYLHRGIEKLMESRT-YAQC 59 Query: 234 TFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACH 293 +D++ + ++ A+ T+VE GI+VP RA+ +R I E+ R+ SHL+ +G + Sbjct: 60 LPYTDKLDYVSSMNNNLAWCTAVEKLAGIRVPLRAEYLRVIAAELNRIASHLVFIGTLLN 119 Query: 294 FTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMR 353 G + F+ FR RE + + +++ GAR + +GG+ D ++ + +T+ + Sbjct: 120 DLGAATAFVYAFRDREKVLDLFDLICGARMSTSYIRLGGVAFDATEEFIEKTQAFLDYVP 179 Query: 354 REVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYG 413 ++E +++ R G+ + E A+ S G +RA+G A D R P+ Y Sbjct: 180 EMLEEYDNLITGNEIFYARMKGVSPMTAEEAKALSLSGANLRATGVAYDIRRVEPYSVYD 239 Query: 414 LLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLM--VEGFTYIPHRFAL 471 L EV D R +VR+ E+ + +I L +P G V P Sbjct: 240 RLDFEVPVGTLGDDWDRYEVRLKEIGESAKIIRQALKEMPEGSCRKVVSPNLRPPKGSVY 299 Query: 472 GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPC 531 E RG+ + ++ K YR R ++ N L + RG V+D+ ++ +LDP Sbjct: 300 HRVENTRGELGFYIVSDGTAKPYRVHIRRPSFVNLQALDPLCRGTLVADSVVVYSTLDPL 359 Query: 532 YSCTD 536 D Sbjct: 360 MGEVD 364 >UniRef50_B5YL34 NADH-quinone oxidoreductase subunit D 2 n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=NUOD2_THEYD Length = 401 Score = 434 bits (1117), Expect = e-120, Method: Composition-based stats. Identities = 103/392 (26%), Positives = 171/392 (43%), Gaps = 32/392 (8%) Query: 177 KKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFL 236 V+ +GP H + +GE +I+ + Y+HRG+EKL+E++ Y L Sbjct: 11 DTTFVLQMGPHHPATHGVLKLLCEFEGERVINIKPDVGYLHRGVEKLSESKT-YPGAMTL 69 Query: 237 SDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTG 296 +DR+ I ++ Y +VE MGI+ P RA+ IR ++ E+ RL SHLL L G Sbjct: 70 TDRLDYISSMTNNIGYCLAVERLMGIEPPPRAKFIRTMVSEMTRLSSHLLWLATHALDIG 129 Query: 297 FDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREV 356 + F+ FR RE ++ E + GAR T IGG+R D+ + + + + M V Sbjct: 130 AMTVFLYAFREREQILQFFEKICGARLTVSYPRIGGVRVDIKEHVLDEIYKFMDLMLIRV 189 Query: 357 QELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLP 416 E +L RT G+G + PE A GP +R SG D R P+ Y + Sbjct: 190 DEYETLLTENRIWIARTRGVGVIAPEDAVLLGLTGPALRGSGVYYDIRKQIPYDAYSEID 249 Query: 417 MEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFT------------- 463 EV + D R RI E+ ++ ++ ++ +P G ++ + Sbjct: 250 FEVPLGEKGDTYDRYLCRIREMRQSVLIVKQCIEKMPEGKILSDKSPDIDLPHQAKRKIE 309 Query: 464 ------------------YIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYAN 505 +P EAP+G+ + ++ + + YR R RA ++ + Sbjct: 310 PGDSLWNGFIAFSEEKQEIMPKGEIYSAIEAPKGELGFYIVSDGSGRPYRMRVRAPSFIH 369 Query: 506 WPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + + G+ ++D IIG+LD DR Sbjct: 370 ISAIPKLCEGHLLADVIAIIGTLDIVMGEADR 401 >UniRef50_C5CEV3 NADH-ubiquinone oxidoreductase chain 49kDa n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CEV3_KOSOT Length = 402 Score = 433 bits (1115), Expect = e-120, Method: Composition-based stats. Identities = 127/390 (32%), Positives = 212/390 (54%), Gaps = 7/390 (1%) Query: 182 VPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 241 +P+GP H +E +F++ +DGE ++D + ++HRG+EK++E +++ F+ +R+C Sbjct: 7 LPVGPFHPLLEEAEYFKIKLDGERVVDIEMETGWMHRGIEKISEE-STFDQSIFVVERIC 65 Query: 242 GICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGF 301 GIC +H A + E+ I+VP +A+ IR+++ E+ER+HSHLL LGLA HF G+D+ + Sbjct: 66 GICSASHPFACINAFEDIGEIEVPLKARYIRSLIGELERVHSHLLWLGLAGHFIGYDTLW 125 Query: 302 MQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVD 361 M ++ RE +++ E++TG R YG IGG+RRD + + +++ + Sbjct: 126 MWAWKYREPVLEVIEMITGNRNHYGTFKIGGVRRDYDVSLNSVVHEKLDFLEKKLTMVAK 185 Query: 362 VLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHS 421 + + P + R G+G L E A + VGP RASG A D R D P+ Y LL V Sbjct: 186 AVANDPVVRSRLCGVGVLTKEEAISYCAVGPTARASGVAIDVRKDEPYAAYDLLDFGVVV 245 Query: 422 EQGCDVISRLKVRINEVYTALNMIDYGLDNLP--GGPLMVEGFTYIPHRFALGFAEAPRG 479 + D+ ++ VRI EV+ ++ MI ++ L GP+ IP +G EAPRG Sbjct: 246 REEGDIFAKTVVRILEVFESIKMIRQIIEKLRKVKGPI-YNDVKEIPAGEGIGRHEAPRG 304 Query: 480 DDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMT 539 + H+ T + + R + RA +Y N PT + G ++D + + S+DPCY CT+R Sbjct: 305 EVFHYIRTDGSNRPVRHKIRAPSYVNIPTYKASCIGENLADVLITLASVDPCYCCTERSV 364 Query: 540 VVDVRKKKSKVVPYKELERYSIERKNSPLK 569 + K L + S ++ + +K Sbjct: 365 RLQTEKGMEIT---SNLLKLSQDKTDRLIK 391 >UniRef50_B1ZRT0 NADH-quinone oxidoreductase subunit D 1 n=16 Tax=Bacteria RepID=NUOD1_OPITP Length = 426 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 107/397 (26%), Positives = 167/397 (42%), Gaps = 29/397 (7%) Query: 169 EFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRM 228 + +GP H ++ ++ ++GE + AD + Y+HRG EK+AE M Sbjct: 31 PDEGGEFSGDRMSLSMGPSHPSTHGVLRIQMELEGEILTKADPIIGYLHRGDEKIAEN-M 89 Query: 229 GYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNL 288 YN+ +DR+ + A++ AY +VE G+ VP R Q IR I E+ R+ SHL+ L Sbjct: 90 TYNQFVPYTDRLDYLAPLANNMAYVIAVEKLAGLTVPPRCQAIRVITAELARISSHLMGL 149 Query: 289 GLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQL 348 G G + + RE + E LTGAR T IGG+ RD+ + Sbjct: 150 GAFGLDVGAWTVLVLSLNQREFLYNLFEDLTGARFTTSYTRIGGVTRDVPPGWLENVGTF 209 Query: 349 AQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHP 408 + ++E++ +L RTVG+G + E A + GP R SG A D R D P Sbjct: 210 CDKFLPALEEILSLLTRNKIFLDRTVGVGVISKEDAIAYGITGPNARGSGIATDLRKDRP 269 Query: 409 FVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPL----------- 457 + GY +V D R VR E+ ++ +I + N PGG Sbjct: 270 YSGYEQYEFDVPVGTKGDCYDRYLVRGEEMRQSVRIIRQVIKNFPGGDWYATEAKKVFLP 329 Query: 458 -----------------MVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRA 500 +V +P AE P+G + ++ YR + R+ Sbjct: 330 PKGKVLSSMEELIQQFMLVTEGPQMPAGEVYFEAENPKGILGFYIVSKGGGVPYRLKIRS 389 Query: 501 ATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 ++ N + + +G +SD I+GSLD DR Sbjct: 390 PSFCNLSLVPKLCQGVLISDVVAILGSLDFVMGECDR 426 >UniRef50_B3VS74 NADH-ubiquinone oxidoreductase chain 49kDa n=4 Tax=Bacteria RepID=B3VS74_DESVM Length = 358 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 127/358 (35%), Positives = 195/358 (54%), Gaps = 3/358 (0%) Query: 180 NVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDR 239 ++P GP H EP H +L V+ E I++A L YVHRG+E LA R YN++ ++ +R Sbjct: 4 TIIPFGPQHPVLPEPLHLKLVVEDETIVEAIPALGYVHRGLETLASIR-DYNQMVYIVER 62 Query: 240 VCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDS 299 VCGIC H+ Y +E M ++VP RA+ +R I E+ R+HSHLL LGL GF+S Sbjct: 63 VCGICSCIHAMCYCQGLETMMNVEVPSRAKYLRVIWSELHRIHSHLLWLGLFADGFGFES 122 Query: 300 GFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQEL 359 FMQF+++RE M + E G R +N++GG+RRDL K ++ +E+++L Sbjct: 123 LFMQFWKIRERVMDINEATAGNRVVISVNVVGGVRRDLDKTQQRWILDELDKLEKELRQL 182 Query: 360 VDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEV 419 + +L +++RTVG+G L E A VGP +R SG A+D R + + L E Sbjct: 183 MKTMLDDYTVKKRTVGVGVLTAEQAIQLGAVGPTLRGSGVAQDARQL-GYAAFDELDFEP 241 Query: 420 HSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRG 479 + D +R KVR E +++++ + LP L P + E PRG Sbjct: 242 VTSPEGDSWARSKVRFMETLQSMDIVRQAISRLPDSEL-AAKVPGKPTGEVVCRVEQPRG 300 Query: 480 DDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + +++ ++ + R R R T+AN P L ML G ++D P+ ++DPC SCT+R Sbjct: 301 ELLYYLKGNGSKNMERVRIRTPTFANIPPLLAMLPGAQLADVPIAALTIDPCISCTER 358 >UniRef50_Q2RJU4 NADH-quinone oxidoreductase subunit D n=94 Tax=Firmicutes RepID=NUOD_MOOTA Length = 371 Score = 431 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 93/358 (25%), Positives = 165/358 (46%), Gaps = 3/358 (0%) Query: 182 VPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 241 + +GP H ++ L +DGE ++ + + Y+HRG+EKLAE R Y +V +DR+ Sbjct: 15 LNMGPQHPSTHGVYRALLTLDGEKVVGVENIIGYLHRGIEKLAEDRT-YTQVIPYTDRLD 73 Query: 242 GICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGF 301 + G ++ Y +VE +G++VPERA+ +R I+ E+ RL SH++ + + + Sbjct: 74 YLAGMLNNLGYVQTVEKLLGLEVPERAEYLRVIMAELSRLASHMVMVASMALDLSGWTAW 133 Query: 302 MQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVD 361 FR RE + + E+ G+R T IGG+ D+ + + R + E+ Sbjct: 134 FPPFRERERILDLFEMTCGSRLTVSYMRIGGVAADIPPGFLPALESFLNDLPRMIAEMNG 193 Query: 362 VLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHS 421 ++ + R G+G++D E A + GP +RA G D R P+ Y ++ + Sbjct: 194 LITGNEIFKARCQGVGKIDLETALAYGITGPNLRACGLPFDLRKARPYSIYDRFDFDIPT 253 Query: 422 EQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPL--MVEGFTYIPHRFALGFAEAPRG 479 D R +R+ E+ + +I ++ LP GP+ V +P E +G Sbjct: 254 LNNGDSYDRFVIRLLEMEQSARIIRQAMEQLPDGPVQAKVPRVLKLPRGEVYHQIEGAKG 313 Query: 480 DDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + ++ K YR + ++ N L + G T+ D + I S+D DR Sbjct: 314 ILGFYLVSDGGSKPYRLHIHSPSFVNLGALPRISVGGTIQDFVVNIASIDIVLGEVDR 371 >UniRef50_D1C6X3 NADH dehydrogenase I, D subunit n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C6X3_SPHTD Length = 410 Score = 431 bits (1108), Expect = e-119, Method: Composition-based stats. Identities = 109/397 (27%), Positives = 179/397 (45%), Gaps = 29/397 (7%) Query: 169 EFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRM 228 E ++ V+ +GP H ++ RL ++GE I D + Y+HRG+EK+ E++ Sbjct: 15 EERQISDTRREMVLNMGPQHPSTHGVLRVRLTLEGETITACDPVIGYLHRGVEKIGESKR 74 Query: 229 GYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNL 288 Y + T +DR + +++ Y +VE +GI+ PERAQ R I+ E+ R+ SHL+ L Sbjct: 75 -YAQFTPWTDRTDYVAAPSNNLGYVLAVEKLLGIEAPERAQYWRMIMGELARIASHLVWL 133 Query: 289 GLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQL 348 G G S + FR RE + + E GAR T + IGG R + R Sbjct: 134 GTHALDIGALSMSLYCFRERELILDIFEKFCGARLTTNMMEIGGFSRPIPAGLPEMIRDF 193 Query: 349 AQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHP 408 + + +E D+L + P RT G+G ++P++A ++ G +R SG D R P Sbjct: 194 LKVFPQRQREYEDLLSANPIWLARTRGVGVIEPDVAINYGLTGACLRGSGVNYDVRKAQP 253 Query: 409 FVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLP-GGPLMVEGFTY--- 464 ++ Y + EV DV R VR+ E+ +L +I+ LD +P GPL + Y Sbjct: 254 YLLYDRIDFEVPLGTQGDVYDRYLVRMEEMRQSLKIIEQCLDQVPTDGPLKLAESNYVIP 313 Query: 465 ------------------------IPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRA 500 P E +G+ ++ ++ + YR R R Sbjct: 314 PHETVLTTAEDMQRHFIWVIKGFSPPKGEVYMSIEHSKGELGYYIVSDGSPVPYRLRIRT 373 Query: 501 ATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + N +L Y+ G ++D +IG++D DR Sbjct: 374 PDFVNLQSLPYLAEGAMLADVVALIGTIDIVLGSVDR 410 >UniRef50_A9B4Z7 NADH-quinone oxidoreductase subunit D 1 n=9 Tax=Bacteria RepID=NUOD1_HERA2 Length = 422 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 100/396 (25%), Positives = 176/396 (44%), Gaps = 31/396 (7%) Query: 172 NELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYN 231 + +++ V+ +GP H ++ + ++GEN++ + ++H G+EK ET+ Y Sbjct: 28 PDENGEQSMVLSMGPQHPSTHGVLRLAVELNGENVVQLAPDVGFLHTGIEKTIETKT-YT 86 Query: 232 EVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLA 291 + L+DR+ + +++ Y ++E M VPERAQ +R +LLE+ R++SHL+ LG Sbjct: 87 KSIVLTDRMDYLAPMSNNMVYVAAIEKLMQQDVPERAQTLRVLLLELTRINSHLVWLGTH 146 Query: 292 CHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQ 351 S F R RE + + E+LTGAR +GG+ D+ D + Sbjct: 147 ALDLAAMSVFFYAMREREYILDIFEMLTGARMMTSYFRVGGLAWDIPADFIPTVEDFLTH 206 Query: 352 MRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVG 411 +V E D+L + +QRT G+G ++ A G +RASG D R P+ G Sbjct: 207 FLPKVDEYEDLLTNNLLWKQRTKGVGVVNAADAIALGLSGANLRASGVDWDLRKTMPYSG 266 Query: 412 YGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDN---LPGGPLMVEGFT----- 463 Y +V Q D+ R + R+ E+ ++ + ++ + G P + E Sbjct: 267 YETYQFDVPVGQAGDIYDRYRCRVQEMRESVKIARQAIERVKQMHGQPYVTENRKVAPPP 326 Query: 464 ----------------------YIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAA 501 P A E+PRG+ + ++ K +R RA Sbjct: 327 KSEITYSMESLIHHFKLWTEGFRPPRGSAYAAIESPRGEIGCYVVSDGTPKPWRVHFRAP 386 Query: 502 TYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 ++ N L ++ +G ++D +I S+DP DR Sbjct: 387 SFINLQALPHIAKGKLMADLVALIASIDPVLGEVDR 422 >UniRef50_B6YU98 Membrane bound hydrogenase, NiFe-hydrogenase large subunit 2 n=5 Tax=Euryarchaeota RepID=B6YU98_THEON Length = 426 Score = 428 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 140/400 (35%), Positives = 218/400 (54%), Gaps = 19/400 (4%) Query: 182 VPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 241 +P GP+H +EP F L +DGE I++ D +L Y RG++ +A R Y ++ +L++R+C Sbjct: 11 IPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGLQWIA-YRRNYVQIMYLAERIC 69 Query: 242 GICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGF 301 GIC F+H+ YT +VE A GI+VPERA+ IRAI+ E+ER+HSHLLNLG+ H G+D+ Sbjct: 70 GICSFSHNHTYTRAVEEAAGIEVPERAEYIRAIIGELERVHSHLLNLGVLGHDIGYDTVL 129 Query: 302 MQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVD 361 + RE M + E ++G R Y + IGG+RRD+ + + + R + ++ + Sbjct: 130 HLTWLARERVMDVLEAISGNRVNYSMVTIGGVRRDIDEKGKRLILDMIKYYRSIMPQIEE 189 Query: 362 VLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL------ 415 V L P +E R + +A + VGP RASG D R Y L Sbjct: 190 VFLHDPTIEARLRDCAVISKRVALEQGAVGPTARASGLKVDARWSERLGVYPDLGVKPVM 249 Query: 416 PMEVHSEQ-GCDVISRLKVRINEVYTALNMIDYGLDNLPGGP--------LMVEGFTYIP 466 P +V E+ DV R VRI E+Y +L+M+++ LD +P G ++V + Sbjct: 250 PQDVTGEKPHGDVFDRAAVRIGEIYQSLDMLEHALDQMPEGKIKTFPKDNILVAKLKIMV 309 Query: 467 HRFALGFAEAPRGDDIHWSMT-GDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLII 525 +G EAPRG+ +H+ + K RW+ R T+ N + + G+ V+D L + Sbjct: 310 DGEGIGRYEAPRGELVHYVRGKKGSDKPLRWKPREPTFPNLFAVAKGVTGDQVADFVLAV 369 Query: 526 GSLDPCYSCTDRMTVVDVRKKKSKVVPYKELERYSIERKN 565 S+DPC SCTDR+ VV + K +++ +L R SI++ Sbjct: 370 ASIDPCLSCTDRVAVV--QDGKKRILTETDLLRLSIKKTR 407 >UniRef50_Q7NI12 NAD(P)H-quinone oxidoreductase subunit H 1 n=3 Tax=cellular organisms RepID=NDHH1_GLOVI Length = 393 Score = 427 bits (1099), Expect = e-118, Method: Composition-based stats. Identities = 112/390 (28%), Positives = 174/390 (44%), Gaps = 27/390 (6%) Query: 174 LGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEV 233 + V+ +GP H + + +DGEN++D L Y+HR MEK+AE+R + Sbjct: 5 ETRAERMVINLGPHHPSMHGVLRLIVTLDGENVVDCVPVLGYLHRSMEKIAESRTIIQYL 64 Query: 234 TFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACH 293 +++ R + + E G+QVP RA+ IR I+LE+ R+ SHLL LG Sbjct: 65 PYVT-RWDYLATMFTEAITVNAPEQLAGVQVPRRARYIRVIMLELSRIASHLLWLGPFMA 123 Query: 294 FTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMR 353 G S F FR RE + E TG R + +GG+ DL + + R + Sbjct: 124 DIGATSPFFYIFREREMIYDLFEAATGMRMMHNYFRVGGVAVDLPYGWVDKARDFCNYLP 183 Query: 354 REVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYG 413 ++ E ++ + P R G+G + E A ++ GPM+RASG D R + Y Sbjct: 184 PKIDEYERLITNNPIFRGRVEGLGYIGREDAINWGLSGPMLRASGVNWDLRKVDHYEIYD 243 Query: 414 LLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPL--------------MV 459 L V + G D ++R VRI E+ ++ MI LD LPGGP Sbjct: 244 ELDWNVAWDTGGDTLARYVVRIQEMRESVKMIRQALDQLPGGPYENLEAQRLSGGPKSEW 303 Query: 460 EGFTY------------IPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWP 507 GF Y +P EAP+G+ + + D+ +RW+ R + N Sbjct: 304 NGFDYQFIGKKSSPTFKMPRGEHYVRVEAPKGELGVYLIGDDSTFPWRWKIRPPGFINLA 363 Query: 508 TLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 L +++G ++D I+GS+D DR Sbjct: 364 VLPKLVQGTKLADLMAILGSVDIIMGEVDR 393 >UniRef50_Q64DY8 F420H2-quinone oxidoreductase 45 kD subunit n=8 Tax=Archaea RepID=Q64DY8_9ARCH Length = 788 Score = 427 bits (1099), Expect = e-118, Method: Composition-based stats. Identities = 141/595 (23%), Positives = 239/595 (40%), Gaps = 68/595 (11%) Query: 5 KLGQHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVLFGND 64 G+ + L G+ K+++ + L E L G Sbjct: 200 AFGKDLVKNLKAQLNGLYTSITVTDKNRIAIKTSPENLVETSRKLSDTMGVDHVKSVNVI 259 Query: 65 ERKLNGHYAVYYVLSMEKGTKCWITVRVEVD---ANKPEYPSVTPRVPAAVWGEREVRDM 121 + + V Y++S + + + + +PE PS+T +A + ERE+ D Sbjct: 260 DVPHERKFMVEYMVSGYTEELMPVILTIFTEIGREAEPEIPSLTSLWESANYSERELHDF 319 Query: 122 YGLIPVGLPDER-RLVLPDDWPDELYPLRKDSMDYRQR---------------------- 158 +G+ G + + +L D PD PLRKD ++ Sbjct: 320 FGVKFKGNEGMKGKFLLAPDTPDT--PLRKDFKLEEEQYTIEEGVPLTPTITPPHYMPPS 377 Query: 159 --------PAPTTDAETYEFINELGDKKNNVVP-IGPLHVTSDEPGHFR--LFVDGENII 207 YE + + +K + V IGP H S GH R + + G+ I Sbjct: 378 SSLSYSESELEDLKMPAYEDVLKEAEKNDEFVAFIGPHHSGS---GHLRWVMRMKGDIIK 434 Query: 208 DADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPER 267 D YVHR MEK+AE R+ V L++R + Y ++ENA+GI+VPER Sbjct: 435 DVIPDPGYVHRSMEKIAENRLYIQNVP-LTERPNISDPINMNLGYVRAIENALGIEVPER 493 Query: 268 AQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGL 327 A+ IR I+ E+ R+ + ++G+ F G +GFM F +RE +++ +TG+R T Sbjct: 494 AKYIRTIMAELSRIGAFFYDMGIFPLFMGHSTGFMYSFAIREMVLELMVRMTGSRCTPSF 553 Query: 328 NLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDF 387 + GGIRRD+ D + +TR+ + + +++ ++ + P + R +G L E A Sbjct: 554 IVPGGIRRDIPDDVLDRTRKFTTAIHKRLKKYENIFVYNPVLISRMKEVGVLTREEAIRC 613 Query: 388 SNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDY 447 VGP +RASG D R P+ Y L E + D + R+ R+ E+ ++ ++ Sbjct: 614 GIVGPFLRASGVEYDVRKAEPYEVYDKLDWEATTGDAGDCLGRIFGRLEEMKQSVEIVRQ 673 Query: 448 GLD---NLPGGPLMVE---------------------GFTYIPHRFALGFAEAPRGDDIH 483 +D +P G ++ E G +P EA RG ++ Sbjct: 674 AVDAVQEMPRGGVISEEILGDYKEASDDIRGYLYNVYGDLVLPKGEWTSVTEAARGTVLY 733 Query: 484 WSMTGDNQK-LYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 ++ YR R + N + +G V+D + S DR Sbjct: 734 SIISDGESNVPYRVRIITPCWMNLRGIIEASKGERVADFWTVYASFGYFPPEADR 788 >UniRef50_Q2FTW4 Membrane bound hydrogenase subunit mbhL n=3 Tax=Euryarchaeota RepID=Q2FTW4_METHJ Length = 409 Score = 427 bits (1099), Expect = e-118, Method: Composition-based stats. Identities = 133/400 (33%), Positives = 212/400 (53%), Gaps = 16/400 (4%) Query: 180 NVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDR 239 +PIGP+H EP +F ++GE I D+ HRG+E + R ++ L DR Sbjct: 8 YELPIGPIHPALKEPINFTFQMNGEVIEKVDFAPGRAHRGIEWMGMRRNPV-QILHLCDR 66 Query: 240 VCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDS 299 +CGICG H+ + +VE I+VP+RA +R I+ E ER+ SH+L G+A H GFD+ Sbjct: 67 ICGICGVHHALVFAQAVEQIADIEVPDRAYYVRTIIAEFERIQSHILWAGVAAHELGFDT 126 Query: 300 GFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQEL 359 F +++RE S+ + E +TG R YG+ ++GG RRD+ D + Q Q ++++ Sbjct: 127 LFYLAWQIREESVDVIEYITGNRVNYGIMMLGGTRRDITADMFPRLEQALQYYEGLLEKM 186 Query: 360 VDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEV 419 V++ L+ + R G L A + + VGP RASG A D R D P+ YG L ++ Sbjct: 187 VNLFLNDKTIAMRCKDTGILTKRRALELATVGPTSRASGLAMDVRIDSPYAAYGDLDFDI 246 Query: 420 HS------EQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGF-------TYIP 466 E DV R+ VRI E+ ++++I + +P GP++ E Sbjct: 247 VLPDVYNSEGNGDVYDRIIVRIFEIKQSIDIIRQCMKQMPEGPVLAEEKYAKLLMNLKKA 306 Query: 467 HRFALGFAEAPRGDDIHWSMTGDNQK-LYRWRCRAATYANWPTLRYMLRGNTVSDAPLII 525 A EAPRG+D+H+ Q+ W+ +A+TY+N +L+G ++D P+I+ Sbjct: 307 SGEAFARVEAPRGEDMHYVRMNGKQEAPEMWKVKASTYSNQMAWVEILQGEQIADIPIIV 366 Query: 526 GSLDPCYSCTDRMTVVDVRKKKSKVVPYKELERYSIERKN 565 S+DPC SCTDR+ VV + + ++ + L R S+E+ Sbjct: 367 ASIDPCMSCTDRVAVVG-QDGNAGIMTKEHLHRLSVEKTR 405 >UniRef50_A5UXK3 NADH-quinone oxidoreductase subunit D 1 n=20 Tax=cellular organisms RepID=NUOD1_ROSS1 Length = 374 Score = 426 bits (1097), Expect = e-118, Method: Composition-based stats. Identities = 104/367 (28%), Positives = 176/367 (47%), Gaps = 12/367 (3%) Query: 182 VPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 241 + IGP H ++ + VDGE I+D Y+HR E+LAE Y + +DR+ Sbjct: 9 INIGPQHPSTHGVFRMIVTVDGETIVDLKPVFGYLHRNHEQLAEV-STYIQSMPYTDRLD 67 Query: 242 GICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTG-FDSG 300 A++ A +VE GI VP+RA+ IR +++E+ R+ +H +G + G + + Sbjct: 68 YFNSMANNHALALAVEKLAGISVPQRAEYIRVLMVELTRILNHASAVGFLLNDMGAWQTP 127 Query: 301 FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELV 360 M R RE + + E+ +GAR GG+ RDL + + Q ++L Q + E Sbjct: 128 LMFGMREREKILDLFEMASGARMMCNYFRFGGVWRDLPPEFIPQLKELMQGLPSFFDEFE 187 Query: 361 DVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVH 420 +L + RT+ +G L E+A +S GP++RASG D R P+ Y L ++ Sbjct: 188 RLLKENEILLSRTINVGVLPKEVAVSYSVTGPVLRASGIPYDVRRAEPYSVYDELDFDIP 247 Query: 421 SEQGCDVISRLKVRINEVYTALNMIDYGLDNLPG------GPLMVE----GFTYIPHRFA 470 DV R +RI E+ + ++ ++ LP P M P A Sbjct: 248 IGSVGDVYDRFLIRIEEMRQSYRILQQVIERLPDTTGGHINPAMANIGKQKALRPPPGDA 307 Query: 471 LGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDP 530 E+P+G+ + ++ +++ YR++ RA ++ N L M RG+ V+D +I+GS+D Sbjct: 308 YARIESPKGELGFYLVSDGSERPYRYKVRAPSFINLTPLGDMCRGHKVADVVVILGSIDI 367 Query: 531 CYSCTDR 537 D+ Sbjct: 368 VMGEVDK 374 >UniRef50_Q2WAW4 Ni,Fe-hydrogenase III large subunit n=11 Tax=Alphaproteobacteria RepID=Q2WAW4_MAGSA Length = 505 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 122/440 (27%), Positives = 206/440 (46%), Gaps = 11/440 (2%) Query: 97 NKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYR 156 + + ++ P + ER + D++GL PVGL D R + WP + + Sbjct: 76 DDRRFLALGNVRPGVIRIERAIHDVWGLTPVGLEDRRHWLDHGRWPSRMPLAAQP----- 130 Query: 157 QRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYV 216 AP+ + + Y F+ +GD + +P+GP+H EPGHFR GE ++ + RL Y Sbjct: 131 --MAPSAEPDRYPFLQAVGDGLHQ-IPVGPVHAGVIEPGHFRFHCQGEAVVRLEQRLGYQ 187 Query: 217 HRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILL 276 H+G+E L + ++ + RV G A+S A+ +VE A G +VP RA +R ++ Sbjct: 188 HKGIEGLLQG-APLDKAARIVARVSGDSTVAYSLAFARAVEAATGCEVPARAHWLRGVMA 246 Query: 277 EVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRD 336 E+ER+ +H+ ++G C+ F +RE ++ ++L G R + GG+ D Sbjct: 247 EMERVANHVFDIGAVCNDAAFAVMLSHMGVLREKVLRANDVLFGHRLNMDRIVPGGVSLD 306 Query: 337 LLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRA 396 L + + + L + +++ + +TP++ RTV G + + F G + RA Sbjct: 307 LSDEGVEALKHLLYGFGKLLEQGYQLYENTPSLSDRTVSTGIVQTSLIHRFGAGGFVGRA 366 Query: 397 SGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGP 456 SG D R + Y L M V DV +R+ VR E +L++I+ L +P G Sbjct: 367 SGRGHDARETPSYPPYDKLDMTVPVLTEGDVNARVLVRFAEAKESLHLINRMLHEMPEGA 426 Query: 457 LMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGN 516 + V +G AE+ RG+ + W G + + R ++ WP L + GN Sbjct: 427 VRVPLPEV--AGEGMGVAESFRGEVVVWLRLGADHVVERCHPHDPSWFQWPLLEAAIEGN 484 Query: 517 TVSDAPLIIGSLDPCYSCTD 536 V+D PL S + YS D Sbjct: 485 IVADFPLCNKSFNCSYSGHD 504 >UniRef50_B5IS38 Respiratory-chain NADH dehydrogenase, 49 Kd subunit domain protein n=1 Tax=Thermococcus barophilus MP RepID=B5IS38_9EURY Length = 409 Score = 425 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 128/403 (31%), Positives = 213/403 (52%), Gaps = 16/403 (3%) Query: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235 K +PIGP+H EP V+GE I+ D + + HRG+E + R + + Sbjct: 2 PKTAYYIPIGPIHPALKEPIRVEAEVEGEKIVRVDVKRGFAHRGIEYMGMKRNAI-QTLY 60 Query: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 295 LS+R+CGIC +H A+ + E A+GI+ P RAQ IR I+ E+ER+HSH+L LG+ H Sbjct: 61 LSERICGICSISHPYAFVVTAEKALGIEAPPRAQYIRPIIAELERIHSHILWLGVIAHEM 120 Query: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 355 GFDS ++ RE + + E+LTG R Y + +IGG+RRDL + + + + Sbjct: 121 GFDSLLFWTWKGREKVLDLLELLTGNRINYSVYMIGGVRRDLKESHIKAIKDAITYYWKF 180 Query: 356 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415 +++ +++LS P + RT G+ +L E+A + VGP+ RA+G D R D P+ Y + Sbjct: 181 TEQMKEIILSDPVYKARTRGVAQLSKEMALKLNVVGPVARAAGIRMDIRQDMPYDAYADI 240 Query: 416 PM------EVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEG-------F 462 + ++ E D VRI E+ +L++I+Y +DNLP G ++ Sbjct: 241 DVRAVVPQDIVGEAKGDAYDITMVRIYEIEQSLDIIEYCVDNLPEGKILAIPNYPALLAK 300 Query: 463 TYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAP 522 A+G EAPRG+ +H+ W+ A +Y N + +L G V+D P Sbjct: 301 IRRTKGEAIGAHEAPRGEVVHYLKFDGRDGPSVWKVIAPSYNNINSWAPLLLGAEVADIP 360 Query: 523 LIIGSLDPCYSCTDRMTVVDVRKKKSKVVPYKELERYSIERKN 565 +++ +DPC C DR+ ++ + + KV+ Y+ + + ++E+ Sbjct: 361 IVVAYIDPCMCCNDRVALL--KTPEGKVLGYEYIHKKAVEKTR 401 >UniRef50_C6A407 Membrane-bound hydrogenase MBH 1, subunit Mbh1L (NiFe hydrogenase catalytic subunit) n=4 Tax=Thermococcus RepID=C6A407_THESM Length = 430 Score = 425 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 138/399 (34%), Positives = 215/399 (53%), Gaps = 16/399 (4%) Query: 182 VPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 241 +PIGP+H +EP F + +DGE II D +L Y RG+E +A R Y ++ +L +R+C Sbjct: 11 IPIGPIHPALEEPEKFIITLDGERIIHVDIKLGYNLRGLEWIAMRRN-YIQLLYLVERIC 69 Query: 242 GICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGF 301 GIC F+H+ YT +VE GI+VPERA+ IRAI+ E+ER+HSHLLNLG+ H G+D+ Sbjct: 70 GICSFSHNHTYTRAVEEMAGIEVPERAEYIRAIIGELERIHSHLLNLGVVGHAIGYDTVL 129 Query: 302 MQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREV-QELV 360 + RE M + E + G R Y +N IGG+RRD+ + + + R EV ++ Sbjct: 130 HLSWLARERVMDILEAIGGNRVNYAMNTIGGVRRDIEEKHKRMILDMIKHYREEVMPKVE 189 Query: 361 DVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVH 420 ++ L P +E R G + IA ++S GP R SG +D R + Y L ++ Sbjct: 190 EIFLYDPTVEARLRDAGVIPKRIALEYSAQGPTARGSGIKKDVRYNERLGVYPELGIKPI 249 Query: 421 SEQG------CDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMV---EGFTYIP----H 467 + + DV R+ VR+ E++ ++ +I+ D +P G + + T Sbjct: 250 TPKEFTGVIKGDVFDRMVVRVGELWQSMEIIEKAFDQMPEGKIKTFSKDNVTLTKLKKAE 309 Query: 468 RFALGFAEAPRGDDIHWSMTG-DNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIG 526 +G EAPRG+ IH+ +W+ R T+ N + L G ++D P+ I Sbjct: 310 GAGIGRYEAPRGETIHYVRANPGTDTPAKWKAREPTFPNLFAVARALVGEQLADVPVAIA 369 Query: 527 SLDPCYSCTDRMTVVDVRKKKSKVVPYKELERYSIERKN 565 S+DPC SCTDR+ ++D K +V+ K+L + SIE+ Sbjct: 370 SIDPCLSCTDRVAIIDSETGKKRVLTEKDLLKASIEKTK 408 >UniRef50_O75306 NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial n=570 Tax=cellular organisms RepID=NDUS2_HUMAN Length = 463 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 99/428 (23%), Positives = 174/428 (40%), Gaps = 32/428 (7%) Query: 141 WPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDK----KNNVVPIGPLHVTSDEPGH 196 W ++ ++ T + + + K KN + GP H + Sbjct: 37 WQPDVEWAQQFGGAVMYPSKETAHWKPPPWNDVDPPKDTIVKNITLNFGPQHPAAHGVLR 96 Query: 197 FRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSV 256 + + GE + D + +HRG EKL E + Y + DR+ + + AY+ +V Sbjct: 97 LVMELSGEMVRKCDPHIGLLHRGTEKLIEYKT-YLQALPYFDRLDYVSMMCNEQAYSLAV 155 Query: 257 ENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAE 316 E + I+ P RAQ IR + E+ RL +H++ + G + F F RE + E Sbjct: 156 EKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYE 215 Query: 317 ILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGI 376 ++GAR GG+ +DL M Q ++ + EL ++L + RT+ I Sbjct: 216 RVSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDI 275 Query: 377 GRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRIN 436 G + E A ++ G M+R SG D R P+ Y + +V D R R+ Sbjct: 276 GVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVE 335 Query: 437 EVYTALNMIDYGLDNLPGGPLMVEGFT---------------------------YIPHRF 469 E+ +L +I L+ +P G + V+ +P Sbjct: 336 EMRQSLRIIAQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGA 395 Query: 470 ALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLD 529 EAP+G+ + ++ + + YR + +A +A+ L M +G+ ++D IIG+ D Sbjct: 396 TYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQD 455 Query: 530 PCYSCTDR 537 + DR Sbjct: 456 IVFGEVDR 463 >UniRef50_Q8U0Z6 Mbh12 membrane bound hydrogenase alpha (NADH dehydrogenase) n=3 Tax=Pyrococcus RepID=Q8U0Z6_PYRFU Length = 427 Score = 425 bits (1092), Expect = e-117, Method: Composition-based stats. Identities = 131/400 (32%), Positives = 215/400 (53%), Gaps = 19/400 (4%) Query: 182 VPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 241 +P GP+H +EP F + +DGE I++ D +L Y RG++ + R Y ++ +L++R+C Sbjct: 10 IPFGPIHPGLEEPEKFIITLDGERIVNVDVKLGYNLRGVQWIGMRRN-YVQIMYLAERMC 68 Query: 242 GICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGF 301 GIC F+H+ Y +VE GI+VPERA+ IR I+ E+ER+HSHLLNLG+ H G+D+ Sbjct: 69 GICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIVGELERIHSHLLNLGVVGHDIGYDTVL 128 Query: 302 MQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVD 361 + RE M + E ++G R Y + IGG+RRD+ + + + R + ++ D Sbjct: 129 HLTWLARERVMDVLEAVSGNRVNYSMVTIGGVRRDIGEKQKRLILDMIKYYREVLPQIED 188 Query: 362 VLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHS 421 V L +E R + + ++A + VGP R SG D+R Y L ++ + Sbjct: 189 VFLHDSTIEARLRDVAVVPKKLAIEMGAVGPTARGSGIKEDSRWSEQLGVYPDLGIKPVT 248 Query: 422 EQG-------CDVISRLKVRINEVYTALNMIDYGLDNLPGGP--------LMVEGFTYIP 466 + DV R+ VRI E++ +L+++++ LD +P G ++V + Sbjct: 249 PEDVTGEKARGDVYDRMAVRIGELWMSLDLLEHALDQMPEGKIKTFPKDNILVAKLKLLG 308 Query: 467 HRFALGFAEAPRGDDIHWSMT-GDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLII 525 +G EAPRG+ +H+ RW+ R T+ N T+ L GN ++D + I Sbjct: 309 DGEGIGRYEAPRGELVHYVRGQKGRDGPVRWKPREPTFPNLFTIAKALEGNELADLVVAI 368 Query: 526 GSLDPCYSCTDRMTVVDVRKKKSKVVPYKELERYSIERKN 565 S+DPC SCTDR+ +V ++ K V+ K+L + SIE+ Sbjct: 369 ASIDPCLSCTDRVAIV--KEGKKVVLTEKDLLKLSIEKTK 406 >UniRef50_C1XJB2 NADH dehydrogenase subunit D n=1 Tax=Meiothermus ruber DSM 1279 RepID=C1XJB2_MEIRU Length = 415 Score = 425 bits (1092), Expect = e-117, Method: Composition-based stats. Identities = 105/390 (26%), Positives = 175/390 (44%), Gaps = 31/390 (7%) Query: 178 KNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLS 237 + + +GP H ++ + + GE I+ + Y+H G EK E R Y + + Sbjct: 27 EVMTLNVGPQHPSTHGVLRVVVDLSGEQILRLTPHIGYLHTGFEKNMEHRT-YTQCITYT 85 Query: 238 DRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGF 297 R+ + F+H AY SVE +G QVP RAQ IR +L E+ R+ SHL+ LG G Sbjct: 86 PRMDYLHSFSHDLAYALSVEKLVGAQVPPRAQAIRVMLNELSRIASHLVFLGTGLLDFGA 145 Query: 298 DSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQ 357 + F FR RE + + E ++G R + IGG++ DL + + + ++ QM + Sbjct: 146 LTPFFYAFREREAVLDLFEWVSGQRFHHNYIRIGGLKEDLPPEFLGEVKKFIAQMPARID 205 Query: 358 ELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPM 417 E + +P +R G+ + PE+A + S G +RASG D R +P+ GY Sbjct: 206 EYEALFRESPIFYERARGVAVIPPEVAINLSLTGGSLRASGVNYDVRKAYPYAGYETYDF 265 Query: 418 EVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLP---GGPLMVEGF--TYIPH----- 467 +V G DV R+ +RI E+ ++ +I ++ L GP+ + P Sbjct: 266 DVPVLTGGDVFDRMVIRILEMRESVKIIRQAVERLEALGPGPIRDPNPQISLPPRHLLET 325 Query: 468 --------------------RFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWP 507 E+ RG+ ++ ++ YR + RA ++ N Sbjct: 326 SMEAVIYHFKLVTEGFHPALGEVYVPTESARGELGYYIVSDGGSMPYRVKVRAPSFVNLQ 385 Query: 508 TLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 +L Y +G ++D ++I SLDP DR Sbjct: 386 SLPYACKGVQMADMVVVIASLDPVMGDVDR 415 >UniRef50_B9L625 NADH-ubiquinone oxidoreductase n=3 Tax=Epsilonproteobacteria RepID=B9L625_NAUPA Length = 549 Score = 424 bits (1091), Expect = e-117, Method: Composition-based stats. Identities = 129/522 (24%), Positives = 213/522 (40%), Gaps = 26/522 (4%) Query: 39 VNYLPEVVEFLYYKQGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANK 98 + L V++ L S + D N Y++ + W+ V +E D Sbjct: 31 KDDLLNVIKDLKQAGVKTCSTVSPTDFIDENKIEVNYFLEDLFGKKNVWLKVDIERDLEN 90 Query: 99 PEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQR 158 E S+TP +P+A W E E +G+ G PD R ++ D+ + +P RKD Sbjct: 91 CEIDSITPLMPSANWHELEAYSTFGVKFKGHPDLRYFLISRDYYGK-FPFRKDFDWKAHE 149 Query: 159 PAPTTDAETYEFINELG----------DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIID 208 + + V+ GP H S P +++ +GENI Sbjct: 150 ENLIQNINDITEEYFEEYEEHEEKLGHEGSRTVLNWGPTHPAS-GPIRLKVYTNGENIEK 208 Query: 209 ADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERA 268 + + YV R +E LAE R + +R+C + Y+ +VE G ++ E A Sbjct: 209 IEPDIGYVWRALEHLAE-RKDFIGTIVAVERICFMDNPNPMICYSQAVEEIAGKEITEFA 267 Query: 269 QMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLN 328 + +R IL E R+ SHL++LG G + M +RE + + E +GAR Sbjct: 268 KYMRVILGETGRIASHLISLGGFFGTMGLHTFMMWCLDIREYFLDVLEDYSGARIATACV 327 Query: 329 LIGGIRRDLLK--DDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARD 386 GG+R L + ++ ++ D+ + P M R G G + + Sbjct: 328 EPGGVRYPLNDYKAWFEGINKAIKKFEDTKADITDIFMKNPLMNTRAKGNGVFTLDDVAE 387 Query: 387 FSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMID 446 + GP+ RASG D R D P+ Y L ME + + D RL + E+ A+++I Sbjct: 388 YYLAGPIARASGAKIDVRIDEPYAAYDKLEMEYATCENGDARDRLYIIFKELEQAMDLIK 447 Query: 447 YGLDNLPGG----------PLMVEGFTYIPHRFALGFAEAPRGD-DIHWSMTGDNQKLYR 495 + + G +V+ +P A+ E RG+ +H + YR Sbjct: 448 QAMAKIEEGIEAGEMDPKKDHLVKMPKRMPAGEAVSRIEWARGEILMHLVTQEKSTSPYR 507 Query: 496 WRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + +A + + L +LRG T+SD PL+ GS+ C DR Sbjct: 508 LKIKAPSVNHTMMLDKLLRGKTLSDIPLLYGSMHICQGDLDR 549 >UniRef50_B3E6C1 NADH-ubiquinone oxidoreductase chain 49kDa n=2 Tax=Deltaproteobacteria RepID=B3E6C1_GEOLS Length = 506 Score = 424 bits (1091), Expect = e-117, Method: Composition-based stats. Identities = 121/484 (25%), Positives = 200/484 (41%), Gaps = 15/484 (3%) Query: 53 QGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAV 112 +G +S G +G +Y +L+ I + N E+PS+ + P Sbjct: 37 RGWRVSSYCG---FPADGAITLYCLLASPADGVLGIMQTI---CNGTEFPSIAVQCPQLQ 90 Query: 113 WGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFIN 172 ERE+ + G+ VG P + + ++ + + + E+ Sbjct: 91 LFEREIAEQCGIRFVGHPWFKPVRF-------VHSAVRGHDAWGRADDQPIQVGVMEYYR 143 Query: 173 ELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNE 232 G++ + V +GP+H EPGHFR GE + + L Y HRG+E+L + + Sbjct: 144 VEGEEIHEVA-VGPVHAGVIEPGHFRFQCHGEQVFHLEISLGYQHRGIEQLLLNG-PHPQ 201 Query: 233 VTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLAC 292 + + G H AY +E+ P A +R I LE+ERL +H +LG Sbjct: 202 TLRQMEAIAGDTSIGHGLAYCMVLESLSKSHPPATAHALRGIALELERLANHTGDLGAIA 261 Query: 293 HFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQM 352 G+ R+R + M+ + G+R GL GG L + + + Sbjct: 262 GDVGYLPTASFCGRIRGDFLNMSAFICGSRFGRGLLKPGGTVFGLDQAQREELQNRLATG 321 Query: 353 RREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGY 412 R E+ +++L +TP++ R G G + E A + VGP RA G RD R+D+PF Y Sbjct: 322 RAELTSAIELLWNTPSVMSRLEGTGVVSAESAVEMGLVGPAARACGLKRDVRSDYPFGIY 381 Query: 413 GLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALG 472 + + + + DV SR VR E +L+ L LP G E + + Sbjct: 382 RMAQVPIATAHHGDVCSRSSVRWEECQKSLDFCVEQLRQLPKGAHAAELKPLQGDQLTVA 441 Query: 473 FAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCY 532 E RG+ H ++T + +++ ++ NW L LR +SD PL S + Y Sbjct: 442 LTEGWRGEICHLAITDSAGRFRQYKITDPSFHNWQGLAMALRNEQISDFPLCNKSFNLSY 501 Query: 533 SCTD 536 D Sbjct: 502 CGFD 505 >UniRef50_C6A3Z3 Membrane-bound hydrogenase MBH 2, subunit Mbh2L (NiFe hydrogenase catalytic subunit) n=1 Tax=Thermococcus sibiricus MM 739 RepID=C6A3Z3_THESM Length = 412 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 130/404 (32%), Positives = 205/404 (50%), Gaps = 17/404 (4%) Query: 177 KKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFL 236 K VPIGP+H EP V+GE I+ D + + HRG+E + R + +L Sbjct: 3 KTTYYVPIGPIHPALKEPIRVEAEVEGEKIVKVDVKRGFAHRGIEYMGMKRNAI-QTLYL 61 Query: 237 SDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTG 296 S+R+CGIC +H A+ E A+GI+ P RAQ IR I+ E+ER+HSH+L LG+ H G Sbjct: 62 SERICGICSISHPYAFVIGSEKALGIEAPPRAQYIRTIIAELERIHSHILWLGVIAHEIG 121 Query: 297 FDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREV 356 FDS ++ RE + + E +TG R Y + +IGG+RRDL + + + + Sbjct: 122 FDSLLFWTWKGREKVLDILEAITGNRINYSMYMIGGVRRDLKESHIRVLKDMITYYWEFT 181 Query: 357 QELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLP 416 + + +V LS P + RT G+ ++ ++A + VGP RA+G D R D P+ Y + Sbjct: 182 EHMKEVFLSDPVYKARTRGVAQVSKDVALKLNLVGPTARAAGLRMDIRQDIPYDAYADID 241 Query: 417 M------EVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVE-------GFT 463 + ++ E D VRI E+ +L++I+Y +DNLP G ++ Sbjct: 242 VKAVVPQDIVGEARGDAYDVTMVRIYEIEQSLDIIEYCIDNLPEGKILAIPNYIALLNKI 301 Query: 464 YIPHRFALGFAEAPRGDDIHWSMTGDN-QKLYRWRCRAATYANWPTLRYMLRGNTVSDAP 522 +G EAPRG+ +H+ W+ A +Y N + Y L G V+D P Sbjct: 302 KKTEGEGIGAHEAPRGEVVHYFRYDGTRDGPAVWKVIAPSYNNINSWGYCLLGAEVADIP 361 Query: 523 LIIGSLDPCYSCTDRMTVVDVRKKKSKVVPYKELERYSIERKNS 566 +++ +DPC C DR+ VV K++ Y L R ++E+ + Sbjct: 362 VVVAYIDPCMCCNDRVAVVKDSTG--KILDYSILHRKAVEKTRA 403 >UniRef50_D2R5G7 NADH dehydrogenase (Quinone) n=2 Tax=Planctomycetaceae RepID=D2R5G7_9PLAN Length = 404 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 107/387 (27%), Positives = 180/387 (46%), Gaps = 31/387 (8%) Query: 181 VVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 240 + GP H + L +DGE ++DA + Y+H G EK+ E + +N+ ++DR+ Sbjct: 19 TLNFGPQHPATHTTLRLVLKLDGERVVDAVPDIGYLHSGFEKIGE-HLDFNQYVTVTDRM 77 Query: 241 CGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG 300 I A++ A+ +VE MGI++ R + IR I+ E+ R+ HLL+ G TG + Sbjct: 78 NYISPMANNVAWHGAVEKLMGIEITPRCKYIRTIICELARISDHLLSTGAMGLDTGAFTF 137 Query: 301 FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELV 360 F+ F RE + E L GAR T +GG+ +D+ + + R + + + ++ Sbjct: 138 FLYAFYQRERIYDIFETLCGARFTNSYTRVGGLSQDMTPLVIEKIRDFLRTFPQTIDDME 197 Query: 361 DVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVH 420 ++ R G+G L E A + S GP+ RASG RD R D P++ YG L +V Sbjct: 198 RLVNRNRIFVDRMKGVGLLSKERATNMSATGPVARASGVTRDLRKDEPYLAYGDLDFQVC 257 Query: 421 SEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTY---------------- 464 D +R VR+ E+ +L ++ L+NLP GP+ V Sbjct: 258 CATAGDCFARYYVRMAEMRESLKIVAQALENLPAGPVNVGMDDRAALPSKAEVYQTIEGT 317 Query: 465 --------------IPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLR 510 +P+ EAP G+ + + + YR RCR ++ ++ Sbjct: 318 ITHFELVMLNRGFTVPNEEVYSAIEAPNGELGFYLVGDGSDVAYRARCRPPSFIHFSLFP 377 Query: 511 YMLRGNTVSDAPLIIGSLDPCYSCTDR 537 ++RG+T+SD ++GSL+ + DR Sbjct: 378 ELIRGHTLSDVVAVLGSLNIIAAELDR 404 >UniRef50_C8XAS3 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XAS3_NAKMY Length = 506 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 150/490 (30%), Positives = 224/490 (45%), Gaps = 17/490 (3%) Query: 53 QGGWLSVLFGNDER-KLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAA 111 QG ++++ G+D+ + G V YV GT + + + D P PS+ A Sbjct: 27 QGYRIALMAGHDDPAERGGTLRVVYVF-TRAGTDQRVELTLRCDPADPHLPSLAGLSFPA 85 Query: 112 VWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFI 171 ERE+RD++G++P G P RLV WP +P+R+D+ P Y F Sbjct: 86 GRFEREIRDLFGIVPDGHPMPSRLVRHFHWPRGWHPMRRDAGP---PPPFGDVDGPYPFR 142 Query: 172 NELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYN 231 G +P+GP+H PGHFR V GE +++ RL++VHRG+EKL R Sbjct: 143 TVEGPGVYE-IPVGPVHAGMIGPGHFRFSVVGETVLNLKARLWFVHRGLEKLFAGR-AVA 200 Query: 232 EVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLA 291 L++RV G H+ AY +VE+A G+ + AQ IRAILLE+ERL++H+ ++G Sbjct: 201 AGVELAERVSGDTTVGHALAYVRAVEDASGVTLDPAAQRIRAILLELERLYNHIGDIGAL 260 Query: 292 CHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQ 351 + G R+RE +++ + +TG R G ++GG+R +L D Sbjct: 261 ANDVGHGILNNHALRIRERLLRINDAVTGHRLMRGAIVVGGVRVRVLPDAGE-----LAA 315 Query: 352 MRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVG 411 + + E+VD+ L + R G L A D +G + RASG A D R DHP G Sbjct: 316 VAADCAEVVDLALGHSVVRDRFTGTAMLSHRQAVDLGTLGYVARASGVAVDARFDHPVPG 375 Query: 412 --YGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNL-PGGPLMVEGFTYIPHR 468 Y DV SR VR E+ +++ MI + P V G T Sbjct: 376 LVYDPAERLSTHPTDGDVASRFLVRAQEIQSSVRMIAALAGQVDTTAPREVGGSTSSAAG 435 Query: 469 F--ALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIG 526 +G E RG +H + +L R R ++ NWP L + V D PL Sbjct: 436 VRAGVGIVEGWRGTIVHRVELDADGRLTRVRIVDPSFFNWPALPLAMADTIVPDFPLANK 495 Query: 527 SLDPCYSCTD 536 S + Y+ D Sbjct: 496 SFNLSYAGND 505 >UniRef50_B1W516 NADH-quinone oxidoreductase subunit D 1 n=24 Tax=Actinomycetales RepID=NUOD1_STRGG Length = 440 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 102/433 (23%), Positives = 179/433 (41%), Gaps = 46/433 (10%) Query: 150 KDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDA 209 + + + D + D + +V +GP H ++ L +DGE + +A Sbjct: 9 RATTEGTVYTVTGGDWDEVVESAVKSDDERIIVNMGPQHPSTHGVLRLILEIDGETVTEA 68 Query: 210 DYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQ--VPER 267 + Y+H G+EK E R TF++ R+ + F + TAY VE +GI+ +P+R Sbjct: 69 RCGIGYLHTGIEKNLEFRNWTQGTTFVT-RMDYLTPFFNETAYCLGVEKLLGIEDQIPDR 127 Query: 268 AQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGL 327 A ++R +L+E+ RL SHL+ + G + + FR RE + + E+ TG R + Sbjct: 128 ATVLRVLLMELNRLSSHLVCIATGGMELGATTIMIYGFRDRELVLDLFELFTGLRMNHAF 187 Query: 328 NLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDF 387 GG+ +DL + + R+ + M++ + E + P + R +G LD Sbjct: 188 VRPGGLAQDLPPGAVDRLREFIKTMKKNLPEYDKLATGNPIFKARMQDVGYLDLTGCMAL 247 Query: 388 SNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDY 447 GP++R++G D R P+ GY EV + CD R +R+ E+ +L +I+ Sbjct: 248 GATGPVLRSAGLPHDLRKSDPYCGYETYDFEVPTADTCDSYGRFLIRLEEMRQSLRIIEQ 307 Query: 448 GLDNLPGGPLMVEGFT-------------------------------------------Y 464 +D L GP+MV Sbjct: 308 CIDRLEPGPVMVADKKIAWPAQLALGPDGLGNSLDHIRNIMGTSMEALIHHFKLVTEGFR 367 Query: 465 IPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLI 524 +P E+P+G+ ++ + YR R ++ N + M G V+D + Sbjct: 368 VPPGQVYTAVESPKGELGVHVVSDGGTRPYRVHFRDPSFTNLQAMAAMCEGGQVADVIVA 427 Query: 525 IGSLDPCYSCTDR 537 + S+DP DR Sbjct: 428 VASIDPVMGGVDR 440 >UniRef50_B5Y915 EchE n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y915_COPPD Length = 360 Score = 421 bits (1082), Expect = e-116, Method: Composition-based stats. Identities = 129/356 (36%), Positives = 193/356 (54%), Gaps = 2/356 (0%) Query: 183 PIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCG 242 P+GP H +E + L ++GE ++DA+ ++ ++HR +EK A R ++ L +R CG Sbjct: 6 PLGPYHPAFEEGEYIELQLEGEMVVDAEIKIGFIHRAIEKSATKRTFIRDLG-LVERTCG 64 Query: 243 ICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFM 302 IC F HS AY +VE A G++VPERA+ IR + E+ER+HSHL+ LG H GFD+ FM Sbjct: 65 ICSFHHSWAYCLAVEKAAGLEVPERAEYIRVLTAELERIHSHLMYLGAMAHKMGFDTLFM 124 Query: 303 QFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDV 362 + RE M M E+L+G R Y +N +GG+RRD+ + Q + + + +L D Sbjct: 125 FTWSGREAVMDMLELLSGNRVNYAINTLGGVRRDVDESISSQIKAALETLEDLGLKLKDT 184 Query: 363 LLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSE 422 ++ RT +G + + A VGP R SG D R P+ Y LL ++ Sbjct: 185 WSKDASILARTKNVGIVSRKEAHLLGVVGPTARGSGIREDLRKTAPYAVYPLLDFDLVVL 244 Query: 423 QGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFT-YIPHRFALGFAEAPRGDD 481 DV SR VR+ EV ++ +I LD +P G + I +G EAPRG+ Sbjct: 245 DDGDVWSRTFVRVLEVLESIKIIRQVLDKMPAGQIKNPKPVLKIEPNDVIGRVEAPRGEL 304 Query: 482 IHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + +T K R + R T N P +M+RG+ ++DAP+I+G +DPC SC DR Sbjct: 305 AYHLITDGTDKPGRLKIRTPTLINLPASEHMMRGSNLADAPVIVGHIDPCMSCMDR 360 >UniRef50_Q6APF2 Related to hydrogenase, component E-formate hydrogenlyase subunit 5 n=1 Tax=Desulfotalea psychrophila RepID=Q6APF2_DESPS Length = 509 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 116/464 (25%), Positives = 206/464 (44%), Gaps = 16/464 (3%) Query: 76 YVLSMEKGTKCWITVRVEVDANKPEYPSVTPRV-PAAVWGEREVRDMYGLIPVGLPDERR 134 ++L++ + ++ + EV + S+T V ERE+ + YG+ P G P + Sbjct: 58 HLLAVVRNRDLYV-IGTEVGK---SFQSLTGAVSEKFHMFEREIAEQYGITPDGHPWLKM 113 Query: 135 LVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEP 194 + ++ + Y F + G+ + V +GP+H EP Sbjct: 114 VRYHKNYAGAK-------DVFGNNYGKENIPGNYPFFSVEGESIHEVA-VGPVHAGIIEP 165 Query: 195 GHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTT 254 GHFR GE ++ + +L Y HRG+EK+ T + + + + G H + Sbjct: 166 GHFRFQCAGEEVLHLEIQLGYQHRGIEKMLPT-LPQKRFPIICESIAGDTSIGHGLSMCQ 224 Query: 255 SVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKM 314 ++E GI V A++IR LE+ER+ +H+ +LG F+ F R+R + + Sbjct: 225 AIEGLAGISVDRGAKIIRTTALELERICNHIGDLGALAGDAAFNPPAAYFGRIRGEFLNL 284 Query: 315 AEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTV 374 ++L+G R GL GG+ + ++ R+ ++ E++ + D++ S ++ R Sbjct: 285 LQVLSGNRFGKGLVRPGGVTHIMREEQRKLIREKLLEVTGEIENICDLIFSAHTVQARFE 344 Query: 375 GIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVR 434 G + E+A+D VG RASG A D R P Y LP + DV SR VR Sbjct: 345 HTGTVQHEMAKDLGLVGYSGRASGIAYDVRNSFPTECYRELPANENRVTNGDVNSRGMVR 404 Query: 435 INEVYTALNMIDYGLDNLP--GGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQK 492 + E+ +L +I+ ++ + ++ P+ F + E RG+ H +T K Sbjct: 405 VEEIMHSLKLINILIEESENTASEVHMQDQILAPNAFIITLNEGWRGEISHCILTDKKGK 464 Query: 493 LYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 + R++ + ++ NW L LR +SD PL S + Y D Sbjct: 465 VQRYKIKDPSFHNWTGLAMSLRNQEISDFPLCNKSFNLSYCGFD 508 >UniRef50_A3DKH4 NADH-ubiquinone oxidoreductase, chain 49kDa n=2 Tax=Desulfurococcaceae RepID=A3DKH4_STAMF Length = 406 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 127/388 (32%), Positives = 199/388 (51%), Gaps = 5/388 (1%) Query: 182 VPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 241 +P+GP H EP + + DGE I++ + Y HRG+EKL E Y ++ F+ RVC Sbjct: 15 IPVGPQHPALHEPVLLKAYADGEEIVNVEINTGYNHRGIEKLGEKNTFYRDI-FIVARVC 73 Query: 242 GICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGF 301 GIC H+ Y ++E + + ERA+ +R + +E ER+HSH+L + GFDS F Sbjct: 74 GICNLVHANCYVRALEEILDMHPNERAKYLRVLAMEFERVHSHMLINAVMAEIIGFDSLF 133 Query: 302 MQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVD 361 M RE MK EI+TG R +IGG+RRD+ + ++ ++ + Sbjct: 134 MNIMLDRENIMKAKEIITGNRVLSDYMMIGGVRRDIDSVKKDKLLKIIDKVLPRLHYYKK 193 Query: 362 VLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHS 421 + + + +R V +G + ++ VGP RASG D R + YG +P + + Sbjct: 194 LFMEDDTILKRLVDVGVIKRSDVTRYTFVGPPARASGVKIDVRVSEKYEVYGDIPFNMVT 253 Query: 422 EQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALG----FAEAP 477 D +R+ VR +E +LNM Y L++LP V +P RF G EAP Sbjct: 254 RNEGDSWARMIVRWDEAIESLNMAKYILEHLPNDGNPVPDERRLPRRFPPGEAFTRVEAP 313 Query: 478 RGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 RG+ ++ M+ K YR + + ++ N Y+ G+T++D P+I+ SLDPC SC +R Sbjct: 314 RGELTYYVMSDGKPKPYRLKIKTPSFTNIINSGYLYVGHTIADLPVILVSLDPCISCMER 373 Query: 538 MTVVDVRKKKSKVVPYKELERYSIERKN 565 +TV+D+ + VP KEL +R N Sbjct: 374 VTVIDLENNTRRKVPIKELAGGGRKRVN 401 >UniRef50_P31895 Carbon monoxide-induced hydrogenase n=14 Tax=Bacteria RepID=COOH_RHORU Length = 361 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 131/361 (36%), Positives = 189/361 (52%), Gaps = 2/361 (0%) Query: 178 KNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLS 237 +P+GPLHV +EP +FR+ VDGE ++ D +VHRG+E LA R Y + L+ Sbjct: 2 STYTIPVGPLHVALEEPMYFRIEVDGEKVVSVDITAGHVHRGIEYLATKRNIYQNIV-LT 60 Query: 238 DRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGF 297 +RVC +C +H Y ++E+ G+ VP RAQ +R I E +R+ SH+ N+ + H GF Sbjct: 61 ERVCSLCSNSHPQTYCMALESITGMVVPPRAQYLRVIADETKRVASHMFNVAILAHIVGF 120 Query: 298 DSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREV- 356 DS FM RE E + G R IGG++ DL KD ++ + Sbjct: 121 DSLFMHVMEAREIMQDTKEAVFGNRMDIAAMAIGGVKYDLDKDGRDYFIGQLDKLEPTLR 180 Query: 357 QELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLP 416 E++ + + P++ RT GIG L D+ +GP+ R SGHA D R P+ Y L Sbjct: 181 DEIIPLYQTNPSIVDRTRGIGVLSAADCVDYGLMGPVARGSGHAYDVRKQAPYAVYDRLD 240 Query: 417 MEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEA 476 E+ + DV SR VR E T++ +I L ++P GP IP A+ EA Sbjct: 241 FEMALGEHGDVWSRAMVRWQEALTSIGLIRQCLRDMPDGPTKAGPVPPIPAGEAVAKTEA 300 Query: 477 PRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 PRG+ I++ T + R + R TY NW L M+ G +SD PLI+ S+DPC SCT+ Sbjct: 301 PRGELIYYLKTNGTDRPERLKWRVPTYMNWDALNVMMAGARISDIPLIVNSIDPCISCTE 360 Query: 537 R 537 R Sbjct: 361 R 361 >UniRef50_Q4P4N9 Putative uncharacterized protein n=1 Tax=Ustilago maydis RepID=Q4P4N9_USTMA Length = 498 Score = 418 bits (1074), Expect = e-115, Method: Composition-based stats. Identities = 99/413 (23%), Positives = 168/413 (40%), Gaps = 54/413 (13%) Query: 178 KNNVVPIGPLHVTSDEPGHFRLFVDGENIIDAD--------------------------Y 211 ++ V GP H + L ++GE I+ D Sbjct: 87 RHFTVNFGPQHPAAHGVLRLILELNGEEILRTDLAICKANIADSIQSCLFWPSGVCILQP 146 Query: 212 RLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMI 271 + +HRG EKL E + Y + DR+ + + Y+ +VE + I+VPERA+ I Sbjct: 147 HVGLLHRGTEKLIEYKT-YTQALPYFDRLDYVSMMTNELCYSRAVEKLLNIEVPERAKWI 205 Query: 272 RAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIG 331 R + E+ R+ +H + + G + F+ F RE M+ E ++GAR G Sbjct: 206 RTMFGEITRILNHCMAVLSHVMDVGGLTPFLWAFEEREKLMEFYERVSGARLHAAYVRPG 265 Query: 332 GIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVG 391 G+ DL + + A Q V E+ +V+ + RT+GIG++ + A D+ G Sbjct: 266 GVAYDLPPGLLDDIHKWATQFGSRVDEIEEVVTGNRIWKGRTIGIGKVTAQEALDYGFSG 325 Query: 392 PMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDN 451 M+R SG D R P+ Y + +V + D R R+ E +L +I+ L+ Sbjct: 326 VMLRGSGIPWDIRKVAPYDAYDQVEFDVPVGKNGDCYDRYLCRVEEFRQSLRIIEQCLNK 385 Query: 452 LPGGPLMVEGFTY---------------------------IPHRFALGFAEAPRGDDIHW 484 +P G + V+ +P EAP+G+ + Sbjct: 386 MPAGQIKVDDHKLVPPPRATMKESMESLIHHFKLFSEGYAVPPGETYSAIEAPKGEMGVY 445 Query: 485 SMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 ++ + YR + RA +A+ +M R + + D IIG+LD + DR Sbjct: 446 LVSDGTNRPYRCKIRAPGFAHLAGADFMARHHYIPDMVAIIGTLDLVFGEVDR 498 >UniRef50_C1D0H4 Putative NADH dehydrogenase (Quinone), subunit D (NADH-quinone oxidoreductase, subunit D) n=1 Tax=Deinococcus deserti VCD115 RepID=C1D0H4_DEIDV Length = 412 Score = 418 bits (1074), Expect = e-115, Method: Composition-based stats. Identities = 107/387 (27%), Positives = 163/387 (42%), Gaps = 28/387 (7%) Query: 178 KNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLS 237 + + +GP H ++ + +DGE + + Y+H G EK E R Y + + Sbjct: 27 EVMSLNVGPQHPSTHGVLRLVVDMDGEYVRKVVPHMGYLHTGFEKTFEHRT-YQQGVTYA 85 Query: 238 DRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGF 297 R + F H AY SVE M QVP+RA MIR IL E+ R+HSHL+ +G G Sbjct: 86 PRTDYLHCFGHELAYVLSVEKLMQAQVPDRASMIRVILHELGRIHSHLVFVGTGLLDLGA 145 Query: 298 DSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQ 357 + F FR +E+ + + E TG R G +GG+ RD+ +D Q QM R V Sbjct: 146 LTPFFYAFREKESCVDLFEEATGYRMNQGFFRVGGLSRDVPEDWPGHVAQFLDQMERGVD 205 Query: 358 ELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPM 417 E ++ + P R G+G + ++A D GP +RASG D R HP+ GY Sbjct: 206 EYTNLFANNPIFLDRARGVGVIPTDVALDLGLTGPNLRASGVPLDVRKAHPYCGYEAYDF 265 Query: 418 EVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTY------------- 464 V S D ++R +R+ E ++ +I L L G + Sbjct: 266 NVISSTDGDSLARFTMRLLEFSESIKIIRQALARLKPGLIKDPNRKISLPPRHELETSME 325 Query: 465 --------------IPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLR 510 P E RG+ ++ ++ YR + RA ++ N L Sbjct: 326 AVIHHFKLVTEGFHPPTGEVYVPVEGARGEVGYYIVSDGGSVPYRVKIRAPSFVNLQALE 385 Query: 511 YMLRGNTVSDAPLIIGSLDPCYSCTDR 537 Y G +D I+ ++DP DR Sbjct: 386 YACVGAQFADLITILATIDPVLGDVDR 412 >UniRef50_Q6MDR3 NADH-quinone oxidoreductase subunit D n=2 Tax=Parachlamydiaceae RepID=NUOD_PARUW Length = 402 Score = 416 bits (1071), Expect = e-115, Method: Composition-based stats. Identities = 109/391 (27%), Positives = 188/391 (48%), Gaps = 28/391 (7%) Query: 174 LGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEV 233 + +GP H ++ +L ++GE ++ D + Y+H G+EK E+R Y++V Sbjct: 13 EESGDVMELNLGPQHPSTHGVLRLKLRLEGEVVLSCDPVIGYLHTGVEKECESRT-YHQV 71 Query: 234 TFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACH 293 L DR+ + G A A+ ++E M I+VPERAQ IR ILLE+ R+ SHLL G + Sbjct: 72 FTLVDRLDYLSGPAEEQAFAGALERLMNIEVPERAQTIRIILLELSRIASHLLWAGTSAL 131 Query: 294 FTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMR 353 S FM F RE + + E ++GAR L IGG+ +DL D + ++ + Sbjct: 132 ELNMSSVFMYSFAEREKILDLFEQVSGARMFPSLWRIGGLAKDLNSDFISHLKEFISGFQ 191 Query: 354 REVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYG 413 + +EL +L +R G+ +D EI + + GP++RASG + D R +P++GY Sbjct: 192 KIWKELDRLLTDNFVWCKRLQGVAVIDQEICKQYMCTGPVLRASGISYDIRKAYPYLGYE 251 Query: 414 LLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFT---------- 463 ++ + D +R VR+ E+ ++++I+ + L G ++ Sbjct: 252 NYNFDIPTHIDGDSYARYLVRMEEMLQSISIIEQAIARLKPGVVLTNDRKVALPPRKELA 311 Query: 464 -----------------YIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANW 506 + P E+ RG+ H+ ++ K YR R R+ ++++ Sbjct: 312 RSMEAVIHQFKLISEGLHPPVGSVYNCVESARGELGHYVISDGTPKPYRLRVRSPSFSHV 371 Query: 507 PTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 L+ +LRG+ +SD + I S+DP DR Sbjct: 372 EVLKKVLRGHVISDVVVAIASVDPILGDVDR 402 >UniRef50_A5GBN1 Ech hydrogenase subunit E n=20 Tax=cellular organisms RepID=A5GBN1_GEOUR Length = 359 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 138/361 (38%), Positives = 206/361 (57%), Gaps = 3/361 (0%) Query: 177 KKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFL 236 + N++PIGP H EP HF L + E +IDA + YVHRG+E+L E R + + + Sbjct: 2 AQRNIIPIGPQHPILPEPIHFDLVTEDEKVIDAIPSISYVHRGLERLVEKR-DFIDFAHV 60 Query: 237 SDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTG 296 +DR+CG+C F HS Y +VE M I+VP+RA +R+I E+ R+HSH+ LG A G Sbjct: 61 ADRICGLCSFMHSLGYCQAVEEIMSIEVPQRALYLRSIWAELSRIHSHIFWLGAAADAFG 120 Query: 297 FDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREV 356 F+S FMQ R+RE + + E TG R G+ +GG+RRD+ D + ++ + Sbjct: 121 FESLFMQAMRLREPVLDIFEETTGGRVILGVCKVGGVRRDIDGDSLKGIVNRLTTLKGAL 180 Query: 357 QELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLP 416 +EL +V L+ +++ R G+G L E A VGPM RASG A D RA + Y L Sbjct: 181 EELSNVFLNDYSVQHRLAGVGFLSREDAYTLGCVGPMARASGLAIDMRAL-GYAAYKYLE 239 Query: 417 MEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEA 476 +E E D +R +VRI E++ A+++I + +P GP+ V+ T P E Sbjct: 240 VEPVVESAGDCHARCRVRIREIFHAIDLIRQAVGKIPAGPVDVK-VTGTPDGEYYSRVEQ 298 Query: 477 PRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 PRG+ IH+ + L R+R R T++N P + +L+G+ ++D P II +LDPC SCT+ Sbjct: 299 PRGEVIHYVKGNGARFLQRFRVRVPTFSNIPAMVKVLKGSQLADVPNIILTLDPCISCTE 358 Query: 537 R 537 R Sbjct: 359 R 359 >UniRef50_Q1AVI6 NADH-quinone oxidoreductase subunit D n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=NUOD_RUBXD Length = 396 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 106/359 (29%), Positives = 176/359 (49%), Gaps = 4/359 (1%) Query: 182 VPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 241 + +GP H L +DGE I+ D + Y+HR EK+AE R Y V L+DR+ Sbjct: 39 MNMGPQHPAMHGLLRLILELDGETIVRCDPVMGYLHRCQEKIAENRT-YPAVIPLTDRLD 97 Query: 242 GICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGF 301 + Y +VE+ +G+++P RA+ IR ++ E+ R+ SHL ++G G + Sbjct: 98 YFANMHNEHGYCLAVEDLLGVEIPPRAEYIRVLMCELMRIASHLPSIGFLLLELGAFTPI 157 Query: 302 MQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQ-ELV 360 + FR RE E +TGAR + IGG++ DL D + + + + + ++ + + Sbjct: 158 LYAFRERERIQNFFEAVTGARMMFHYIRIGGVKADLPPDIPEKIWEYVEGLEKRIKPDFI 217 Query: 361 DVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVH 420 D++ +RT GI RL E A + GP +R +G A D R D+P+ Y L EV Sbjct: 218 DLIEGNEIFIERTRGISRLTQEEAIELGLTGPPLRCTGVAFDVRRDYPYSVYPELDFEVV 277 Query: 421 SEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVE--GFTYIPHRFALGFAEAPR 478 ++ DV + +VRI EVY ++ +I L+ +P G +M + P G E PR Sbjct: 278 TDTAGDVEASYRVRIKEVYESIKIIRQCLEKMPEGEVMGDVGRRVRPPEGEGFGRVEGPR 337 Query: 479 GDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 G+ ++ + YR R ++ N L+ + G+ + D I+G +DP D+ Sbjct: 338 GEFAVHVVSDGSDTPYRVHYRDPSFVNMQLLQEKMPGHYLPDIMPIMGLVDPVSGGWDK 396 >UniRef50_Q5P2H0 Subunit of formate hydrogenlyase-like membrane complex, related to large subunit of hydrogenases n=15 Tax=Proteobacteria RepID=Q5P2H0_AZOSE Length = 551 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 148/484 (30%), Positives = 226/484 (46%), Gaps = 9/484 (1%) Query: 53 QGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAV 112 G L L+G+D R + +AV + +G + + +D +P YP ++ AV Sbjct: 76 AKGRLVSLWGSDRRAMGDGFAVGAAYATAEG---LLWAELGLDVVRPAYPDISRFFVPAV 132 Query: 113 WGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFIN 172 +R D+ G+ D R + WP + +PLR ++ + + Y F+ Sbjct: 133 RMQRAAHDLVGIDAEDSGDSRPWLRHGAWPADYFPLR---IENTGQERFAPQPDNYPFVF 189 Query: 173 ELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNE 232 GD + + +GP+H + EPGHFR V GE ++ + R Y H+G+E+ M +E Sbjct: 190 VEGDGVHE-IAVGPVHAGTIEPGHFRFSVVGEKVLRLEERFGYTHKGIERRFMG-MDIDE 247 Query: 233 VTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLAC 292 L+ RV G A++ AY + E+A G+ VPERA +RA+LLE ER+ +HL +LG Sbjct: 248 GARLAGRVSGDSTVAYAWAYAMAAESAAGVAVPERAAWLRALLLERERVANHLGDLGALG 307 Query: 293 HFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQM 352 + F QF R+RE ++ G R GG+ RDL Q R+ A + Sbjct: 308 NDAAFGFALAQFSRLREDWLRANFEAFGHRLLMDCIRPGGVARDLDAAAAAQLRRDAVAL 367 Query: 353 RREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGY 412 EV EL D+ ++ R V GR+ PE+A G RASG D R D P+ Y Sbjct: 368 VAEVAELKDIYDEHAGLQDRFVTTGRVAPELAARLGLTGLAGRASGQVADLRVDFPWPPY 427 Query: 413 GLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALG 472 L + ++ DV +R+ VR +E + +L +ID L LP GPL G Sbjct: 428 DKLAVTASTQFNGDVAARVAVRFDECFESLRLIDALLAALPDGPLDAP-VAIRDAASGAG 486 Query: 473 FAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCY 532 + E RG+ T ++ R C ++ NWP + + N V+D PLI S + Y Sbjct: 487 WIEGWRGEIFVALETDARGRIARCHCHDPSWQNWPVIEHASIDNIVADFPLINKSFNLGY 546 Query: 533 SCTD 536 S D Sbjct: 547 SAQD 550 >UniRef50_Q2JFL7 NADH-quinone oxidoreductase subunit D n=81 Tax=Bacteria RepID=NUOD_FRASC Length = 482 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 110/440 (25%), Positives = 183/440 (41%), Gaps = 49/440 (11%) Query: 146 YPL-RKDSMDYRQRPAPTTDAETYEFINELGDKKNN--VVPIGPLHVTSDEPGHFRLFVD 202 +P + T +E I +G+++N VV +GP H ++ L ++ Sbjct: 44 HPAYEAGFTESANGRVYTVTGSDWEQILGVGEEENERIVVNMGPQHPSTHGVLRLVLEIE 103 Query: 203 GENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGI 262 GE + + + Y+H G+EK E R VTFL+ R + + AY SVE +GI Sbjct: 104 GETVTETRLVIGYLHTGIEKSCEYRTWTQAVTFLT-RADYLSPLFNEAAYCLSVERLLGI 162 Query: 263 --QVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTG 320 QVPERA +IR +++E++R+ SHL+ L G + + FR RE + + E++TG Sbjct: 163 TEQVPERATVIRVMVMELQRIASHLVWLATGGMELGATTAMIFGFREREKVLDLLELITG 222 Query: 321 ARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLD 380 R + GG+ +DL R M + ++E +L P + R V + LD Sbjct: 223 LRMNHAYIRPGGLAQDLPDGAERAIRAFLADMPKRIREYHALLTGQPVWKARMVDVNVLD 282 Query: 381 PEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYT 440 GP++RA+G D R P+ GY +V + D +R VR+ E+ Sbjct: 283 AAGCIALGTTGPVLRAAGLPWDLRKTMPYCGYETYEFDVPTALEGDSFARYLVRLEEMGE 342 Query: 441 ALNMIDYGLDNLPGGPLMVEGFT------------------------------------- 463 +L ++D LD L GP+MV Sbjct: 343 SLKIVDQCLDRLRPGPVMVADKKIAWPSQLSVGSDGTGNSLAYIRKIMGTSMEALIHHFK 402 Query: 464 ------YIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNT 517 +P E+PRG+ + ++ + +R R ++ N + + G Sbjct: 403 LVTEGFRVPAGQVYTQIESPRGELGYHVVSDGGTRPFRVHVRDPSFVNLQAVPALTEGGQ 462 Query: 518 VSDAPLIIGSLDPCYSCTDR 537 V+D + + S+DP DR Sbjct: 463 VADVIVGVASVDPVLGGVDR 482 >UniRef50_P56753 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic n=201 Tax=cellular organisms RepID=NDHH_ARATH Length = 393 Score = 415 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 106/394 (26%), Positives = 170/394 (43%), Gaps = 27/394 (6%) Query: 170 FINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMG 229 + K +V +GP H + + +DGE+++D + L Y+HRGMEK+AE R Sbjct: 1 MKRPVTGKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRAI 60 Query: 230 YNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLG 289 + +++ R + E IQVP+RA IR I+LE+ R+ SHLL LG Sbjct: 61 IQYLPYVT-RWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLG 119 Query: 290 LACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLA 349 G + F FR RE + E TG R + IGGI DL + + Sbjct: 120 PFMADIGAQTPFFYIFREREFVYDLFEAATGMRMMHNFFRIGGIAADLPYGWIDKCLDFC 179 Query: 350 QQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPF 409 EV E ++ P +R G+G + E A ++ GPM+RASG D R + Sbjct: 180 DYFLTEVVEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIPWDLRKIDRY 239 Query: 410 VGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPL------------ 457 Y E+ ++ D ++R VR++E+ ++ +I L+ LPGGP Sbjct: 240 ESYDEFEWEIQWQKQGDSLARYLVRLSEMTESIKIIQQALEGLPGGPYENLESRGFDRKR 299 Query: 458 --MVEGFTY------------IPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATY 503 F Y + + EAP+G+ + + + +RW+ R + Sbjct: 300 NPEWNDFEYRFISKKPSPTFELSKQELYVRVEAPKGELGIFLIGDQSGFPWRWKIRPPGF 359 Query: 504 ANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 N L +++ ++D I+GS+D DR Sbjct: 360 INLQILPELVKRMKLADIMTILGSIDIIMGEVDR 393 >UniRef50_D2LH96 NADH-ubiquinone oxidoreductase chain 49kDa n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LH96_RHOVA Length = 504 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 132/468 (28%), Positives = 219/468 (46%), Gaps = 25/468 (5%) Query: 69 NGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVG 128 + H+ + ++ + +++ ++ A YPSV P A+ ER +RD+YG IP G Sbjct: 61 DDHHVRMALWDAQENCRAIVSLSLKAGA----YPSVGLHHPPALRLERAMRDLYGAIPDG 116 Query: 129 LPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLH 188 +PDERR + WP + Y F+ G+ + +P+GP+H Sbjct: 117 IPDERRWLDHGVWPGREHEPG------------------YHFLPVEGNGLHQ-IPVGPVH 157 Query: 189 VTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAH 248 EPGHFR +GE + + RL YVH+G+E LA+ + L+ R+ G A+ Sbjct: 158 AGIIEPGHFRFTANGETVARLEARLGYVHKGVEALAQG-ASIEKAAKLAARMSGDSTVAY 216 Query: 249 STAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVR 308 S A++ +VE A+G ++P RAQ++R ++ E+ERL H+ ++G C+ + +R Sbjct: 217 SFAFSRAVEAALGWEIPPRAQILRGVMAELERLSHHVSDVGGICNDAAVAVLLARCSLIR 276 Query: 309 ETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPN 368 E ++ L G R + GG+ RD+ L +++ +V +P+ Sbjct: 277 EDILRTQAALFGHRMMMDAIVPGGVARDIDAAGATAILALLERIEIGFHRVVRAYDQSPS 336 Query: 369 MEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVI 428 ++ RT G G + + R F+ G + RA G A D RA P+ Y + +V + + DV Sbjct: 337 IQNRTHGTGIVQLDFIRQFAAGGFVGRAGGRAFDARASFPYPPYNAVAFKVPTREESDVD 396 Query: 429 SRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTG 488 +R+ +RI E+ + +I L L GP+ + P EA RGD Sbjct: 397 ARIWIRIEEIAESAGIIRQLLAKLEDGPIHAAPPPFQP-GAGAALVEAFRGDLFLAVRIE 455 Query: 489 DNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 D ++ R A++ WP L + GN V+D PL S + YS D Sbjct: 456 DESRIAHMHARDASWFQWPLLETAIDGNIVADFPLCNKSFNCSYSGVD 503 >UniRef50_B8DS05 NADH dehydrogenase (Quinone) n=7 Tax=Deltaproteobacteria RepID=B8DS05_DESVM Length = 406 Score = 415 bits (1066), Expect = e-114, Method: Composition-based stats. Identities = 102/378 (26%), Positives = 168/378 (44%), Gaps = 6/378 (1%) Query: 165 AETYEFINELGD-KKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKL 223 + Y E G ++ ++ +GP H ++ L +DGE I+ A+ L Y+HR EK+ Sbjct: 30 GDGYTCRFEQGARPESLILNMGPQHPSTHGVLRVLLELDGEYIVRAEPVLGYLHRMHEKM 89 Query: 224 AETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHS 283 AE + + RV + A + AY +VE GI++PERA+ +R I E+ R+ S Sbjct: 90 AEVKTPA-QFMPNMGRVDYLHALAWNWAYVGAVEKLAGIEIPERAEYLRVITCELNRISS 148 Query: 284 HLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMI 343 HLL G G + M F RE + + +++TG+R TY GG+ D + Sbjct: 149 HLLWWGAYLLDLGAFTPIMYAFDDREMLLDLLQLMTGSRLTYSSFRFGGVYTDASPAFVQ 208 Query: 344 QTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDT 403 RQ +R + ++ + +R +G + ++ + GP+ R SG A D Sbjct: 209 GVRQFIPHLRSRLPMYTALVTENIILRRRIEEVGVIPQDMVTRYGASGPVARGSGIAYDV 268 Query: 404 RADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFT 463 R P+ Y E+ ++R VR+ E+ +L +++ ++NLP G M Sbjct: 269 RRAEPYSVYDRFDYEIPVRHEECSMARYMVRMAEIEQSLRIVEQAIENLPDGEHMHPKAP 328 Query: 464 YI----PHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVS 519 P + E RG W + + YR + RA ++N RG ++ Sbjct: 329 KPSFKLPAGESYFAVEGARGKIGVWIASDGGKTPYRVKLRAPGFSNLALFAECARGTLLA 388 Query: 520 DAPLIIGSLDPCYSCTDR 537 DA I+GSLD DR Sbjct: 389 DAVAILGSLDMVIPEIDR 406 >UniRef50_D2LAG1 NADH-ubiquinone oxidoreductase chain 49kDa n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2LAG1_9DELT Length = 409 Score = 415 bits (1066), Expect = e-114, Method: Composition-based stats. Identities = 135/408 (33%), Positives = 202/408 (49%), Gaps = 52/408 (12%) Query: 180 NVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDR 239 ++P GP H EP H +L ++ E +I+A L YVHRG+E+L E R +N++ + +R Sbjct: 4 TILPFGPQHPVLPEPLHLKLTIENETVIEALPTLGYVHRGLERLCEIR-DFNQMIQIVER 62 Query: 240 VCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDS 299 VCGIC H+ Y VE MG++VP RA+ +R I E+ R+HSHLL LGL GF+S Sbjct: 63 VCGICSCLHALCYCEGVEQIMGVEVPRRAKYLRTIWGELHRMHSHLLWLGLFADAFGFES 122 Query: 300 GFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQEL 359 FMQF+RVRE M + E G R +N+IGG+RRDL + + Q +E+++L Sbjct: 123 LFMQFWRVRERIMDIMEATCGNRVVVSVNVIGGVRRDLSPEQCLWIEQQLALSEKEIKQL 182 Query: 360 VDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEV 419 +L+ +++RTVGIG L E A VGPM+R SG A+D R + + L E Sbjct: 183 QTTILNDYTVKKRTVGIGVLSKEKAYQLGAVGPMLRGSGWAQDARQT-GYAAFDELGFEP 241 Query: 420 HSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGP----------------------- 456 E G D +R VR E +++++ + +P G Sbjct: 242 VVEYGGDSYARCAVRFRETLQSIDIVRLAIARMPAGETSVNVEGAMEDDTPRPVVAGERR 301 Query: 457 ---------------------------LMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGD 489 L+ P A+ E PRG+ +++ Sbjct: 302 DIMQAYNRDKHHKITAAPPPNLDLPTGLVAAKVKGKPDGEAVTRVEQPRGELMYYIKGNG 361 Query: 490 NQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 ++ + R R R T+AN P L +L G ++D P+I+ S+DPC SCT+R Sbjct: 362 SKNMERVRIRTPTFANIPPLLAILPGCELADVPVIVLSIDPCISCTER 409 >UniRef50_C1TPP0 Ni,Fe-hydrogenase III large subunit n=2 Tax=Synergistaceae RepID=C1TPP0_9BACT Length = 413 Score = 414 bits (1065), Expect = e-114, Method: Composition-based stats. Identities = 139/406 (34%), Positives = 212/406 (52%), Gaps = 15/406 (3%) Query: 174 LGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEV 233 + + K +PIGP+HV EP L ++GE+I DA R +HRG+E +A R +V Sbjct: 1 MSETKTYKLPIGPVHVGLKEPITAWLDIEGEHIKDAVIRPGAIHRGVEFMARERNPI-QV 59 Query: 234 TFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACH 293 +L++RVCGIC F+H+ A+ +VE+A I+VP RAQ IR+++LE+ER+HSH+L G+AC+ Sbjct: 60 IYLAERVCGICSFSHAIAFVKAVEDAAQIEVPIRAQYIRSMVLELERIHSHILWSGVACY 119 Query: 294 FTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMR 353 GFDS F +RE M + E L+G R Y + +GG+R D+ + + R Sbjct: 120 TIGFDSAFHLGMMLREKVMDVLEALSGNRVNYAVTTVGGVRWDVTPAVVRTVMDMIHYYR 179 Query: 354 REVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGY- 412 E + ++ P ++ R +G L E A + +GP R SG D R P+ Y Sbjct: 180 NEFASFYEAAINDPVVKARLRDVGVLTTEQAIKYCALGPTSRGSGVRADVRWSAPYDAYC 239 Query: 413 -----GLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFT---- 463 ++P + E DV R VR+ EV +L++++ ++ LP G + E Sbjct: 240 DIHVEPVVPQDYTGEVHGDVYDRFLVRVYEVLQSLDILEKIMEGLPEGSITFEPKVNKLL 299 Query: 464 ---YIPHRFALGFAEAPRGDDIHWSMTGD-NQKLYRWRCRAATYANWPTLRYMLRGNTVS 519 G EAPRGDD H + + W+ RA TY+N + M + N ++ Sbjct: 300 TVLKKAEGVGYGCIEAPRGDDTHAVGLKAQQENVQWWKVRAPTYSNAVSWPLMFKDNELA 359 Query: 520 DAPLIIGSLDPCYSCTDRMTVVDVRKKKSKVVPYKELERYSIERKN 565 DAPLII S+DPC SC +RM + D VV +L + E+ + Sbjct: 360 DAPLIINSIDPCISCMERMVLSDTSSGTKSVVTKADLLKLCREKTD 405 >UniRef50_D0L1P0 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=2 Tax=Gammaproteobacteria RepID=D0L1P0_HALNC Length = 518 Score = 411 bits (1056), Expect = e-113, Method: Composition-based stats. Identities = 140/509 (27%), Positives = 227/509 (44%), Gaps = 17/509 (3%) Query: 36 TVKVNYLPEVVEFLYYKQGGWLSVL----FGNDERKLNGHYAVYYVLSMEKGTKCWITVR 91 T++ + L E + L G S R G ++V Y++S I Sbjct: 20 TLRPDKLLEAAQSLLDDLGDTPSAHGRIQCAYALRDAEGKFSVRYIISQGANQPWGIW-- 77 Query: 92 VEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKD 151 VDA+ PS+ +P W ERE++D+YG+ P+ L+L + + PL+ Sbjct: 78 -SVDASSGTLPSLANVLPLLGWYEREIQDLYGITFTDHPEPYPLILHEGFIPAKPPLQTG 136 Query: 152 SMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADY 211 + AE + N +GD +P GP+ E F GE I+ Sbjct: 137 FDP--KAEPIRGQAEPFAEANMVGDD-IQRLPFGPIRADVVESAQFVFHYIGEGILHYHP 193 Query: 212 RLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMI 271 RLFY HR ME E + + L++RV G+ AH A++ ++E A+G Q P RAQ Sbjct: 194 RLFYKHRAMEARFEG-VPISAACVLAERVSGVDSVAHVLAFSQAMEAALGWQAPLRAQAW 252 Query: 272 RAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIG 331 R +L E+ERL++HL G T + + E ++ LTG+R G+ + G Sbjct: 253 RVVLAELERLYNHLQFFGHLAKTTTLKVAEAEGIWLEEQVKQINGRLTGSRFLRGVIVPG 312 Query: 332 GIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVG 391 G+RRDL +I ++ ++++ +D L +T + R + G L ++A D G Sbjct: 313 GLRRDLDATALI---ADLNALQPQIEDYLDTLANTRSYLDRLLTTGVLPRQVAFDQGATG 369 Query: 392 PMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDN 451 P+ RAS RD R DH + Y L V + D +R +VR E+ +L++I L+ Sbjct: 370 PIERASDLDRDLRRDHGYALYPELQFAVPTATEGDADARARVRDQEIRQSLHLIRQALNK 429 Query: 452 LPGGPLMVEGFTYIP--HRFALGFAEAPRGDDIHWSMTG-DNQKLYRWRCRAATYANWPT 508 L GP+ T P LG+AEA RG I+ ++L R + + +++NW Sbjct: 430 LEPGPICRTESTIDPPMEGMGLGWAEAVRGGLIYAVHWDAKTERLTRVKIKEPSFSNWRV 489 Query: 509 LRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + + + + D + S + DR Sbjct: 490 FPFTVNDSNMMDYAINEASFGLSVAGADR 518 >UniRef50_Q0W3I1 Ech hydrogenase, subunit E n=2 Tax=Euryarchaeota RepID=Q0W3I1_UNCMA Length = 359 Score = 410 bits (1055), Expect = e-113, Method: Composition-based stats. Identities = 130/358 (36%), Positives = 203/358 (56%), Gaps = 3/358 (0%) Query: 181 VVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 240 V GP H EP +L +DGE + D + YVHRG+EK E YN+ +L++RV Sbjct: 4 TVQFGPQHPVWIEPIRLKLALDGELVKDVELEAGYVHRGLEKKFE--WDYNKAAYLAERV 61 Query: 241 CGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG 300 CGIC HST + +VE+ M +++P RA +IR I+LE+ERLHSHLL +GL GF++ Sbjct: 62 CGICTQHHSTCFCLAVESTMKLEIPRRAAVIRNIMLELERLHSHLLAIGLTLEAIGFENL 121 Query: 301 FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELV 360 FM FR RE + + E TG R +G+NL+GG+ R++ + + + + ++L Sbjct: 122 FMLCFRNREIVLDVFERTTGNRVLHGINLVGGVTRNIGPEMAQEIMDFCDTIEKRCRDLE 181 Query: 361 DVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVH 420 D+++ + ++ R G+G L + A D+S VGP+ R SG D R D P++ YG L M+ Sbjct: 182 DMIVHSRTIKDRMKGVGILSKQTALDYSVVGPIARGSGIPYDVRIDAPYLLYGELKMKHV 241 Query: 421 SEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMV-EGFTYIPHRFALGFAEAPRG 479 E+GCDV +R VR+ E++ ++++I + L G P + +P E PRG Sbjct: 242 VEEGCDVWARSIVRVRELFQSIDLIRQLVPMLEGLPDDILAKSKTMPDGDGFARVEPPRG 301 Query: 480 DDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + ++ +++L R + R +TYAN P L +++G ++D I S DPC C DR Sbjct: 302 ELFYFVRGKKSKELDRVKVRTSTYANGPALIPVIKGCQLADVGPITISYDPCIGCFDR 359 >UniRef50_Q30PI1 NADH-quinone oxidoreductase subunit D n=45 Tax=Epsilonproteobacteria RepID=NUOD_SULDN Length = 412 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 103/403 (25%), Positives = 179/403 (44%), Gaps = 34/403 (8%) Query: 168 YEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETR 227 +E I + ++ GP H ++ L + E I+ A + Y+HRGMEK+AE Sbjct: 11 FENITFDREDNEMILNFGPQHPSAHGQLRLMLHLQQEMIVKAHPDIGYLHRGMEKMAEN- 69 Query: 228 MGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLN 287 M YNE +DR+ I A++ + +VE +G++VP RA++IR +LLE+ RL SHL Sbjct: 70 MIYNEFMPTTDRMDYIASSANNYGFALAVERLIGLEVPRRAKVIRMMLLEINRLMSHLFW 129 Query: 288 LGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQ 347 L G + F+ FR RE M + E GAR T+ IGG+ D+ + Q + Sbjct: 130 LATTALDIGAMTVFLFAFREREYLMDIMEGYCGARLTHAAIRIGGVPLDIQDTFITQLKT 189 Query: 348 LAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADH 407 ++ + +++ D+L + R +G + E+A + GPM+RASG A D R + Sbjct: 190 FLDKLPQNIKDYEDLLDTNRIWLMRMEEVGVISKEMALSWGCSGPMLRASGVAWDIRKEE 249 Query: 408 PFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNL--------------- 452 P+ Y + V D +R ++ + E+ + ++ +D Sbjct: 250 PYELYDEVEFRVPYSDKGDNFARYRIYMEEMRESAKILYQTIDMYEKCVKDNQTELMAHA 309 Query: 453 ------PGGPLMVEGFT------------YIPHRFALGFAEAPRGDDIHWSMTGDNQKLY 494 P +M + ++ P E+P+G+ + + Y Sbjct: 310 PKYISAPKLDIMTQNYSLMQHFVLVTQGMRPPVGEVYVATESPKGELGFYINSQGGPYPY 369 Query: 495 RWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 R + RA ++ + L +L G+ + D IIG+ + + DR Sbjct: 370 RLKLRAPSFWHTGILTDILPGHYIPDVVSIIGTTNIVFGEVDR 412 >UniRef50_C7LSU9 NADH-ubiquinone oxidoreductase chain 49kDa n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LSU9_DESBD Length = 493 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 123/485 (25%), Positives = 201/485 (41%), Gaps = 30/485 (6%) Query: 52 KQGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAA 111 + G L FG + + + VL+++ + + + YPS+TP+ P A Sbjct: 38 ESGARLCSWFGVPD---HDGTILVAVLALDSESILGVARSEPIS---GSYPSLTPKHPQA 91 Query: 112 VWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFI 171 EREV + +GL+PVG P + + R F Sbjct: 92 HLFEREVWEQHGLVPVGHPWLKPV----------------------RHTFENAPANAPFF 129 Query: 172 NELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYN 231 G + + V +GP+H EPGHFR GE ++ + L Y HRG+E + Sbjct: 130 RVEGGEVHEVA-VGPVHAGVIEPGHFRFQCAGEEVLHLEIALGYQHRGIEDALQNGPHPA 188 Query: 232 EVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLA 291 + + + V G AH+TA+ + +E G++ P RAQ +RA+ LE+ERL +H ++G Sbjct: 189 TMNQI-ETVAGDTTIAHATAHASVLEALGGVETPLRAQWLRAMALELERLANHTGDMGAL 247 Query: 292 CHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQ 351 F ++R + + +L G R GL GG R DL ++ + + + Sbjct: 248 AMDVAFLPTSAACGKIRGDFLNLTALLCGNRFGRGLIRPGGCRHDLEEERLKTLTERLKA 307 Query: 352 MRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVG 411 +V++ + ++ R +G + P A D VGP RA G RD R DHP Sbjct: 308 HMADVEQAMAWFWDAASVRVRFRNVGVVHPSQATDIGLVGPAARACGLVRDVRFDHPAGW 367 Query: 412 YGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFAL 471 + V D+ +R +VR E+ + + L G + P A+ Sbjct: 368 HRFSHSPVAVWPSGDIFARARVRSLEIQRSGRYLFDQLAAPVDGDITAALPAPQPESLAV 427 Query: 472 GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPC 531 E RG+ H ++T + ++ ++ NW L LRG VSD P+ S + Sbjct: 428 ALVEGWRGEVCHVALTDYFGRFRSYKITDPSFHNWTGLALSLRGTAVSDFPICNKSFNLS 487 Query: 532 YSCTD 536 Y D Sbjct: 488 YCGFD 492 >UniRef50_Q1QP34 NADH-quinone oxidoreductase subunit D 1 n=9 Tax=cellular organisms RepID=NUOD1_NITHX Length = 396 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 100/396 (25%), Positives = 164/396 (41%), Gaps = 32/396 (8%) Query: 173 ELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNE 232 +N + GP H + L +DGE + D + +HRG EKL E + Y + Sbjct: 2 VEAAPRNFTINFGPQHPAAHGVLRLVLELDGEVVRRVDPHIGLLHRGTEKLIEHKT-YLQ 60 Query: 233 VTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLAC 292 DR+ + A+ + E + I +P+R Q+IR + E+ RL SHLLN+ Sbjct: 61 ALPYFDRLDYVAPMNQEHAFCLATEKLLNITIPKRGQLIRVLYCEIGRLLSHLLNVTTQA 120 Query: 293 HFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQM 352 G + + F RE M E +GAR +GG+ +DL + Sbjct: 121 MDVGALTPPLWGFEEREKLMVFYERASGARMHANYFRVGGVHQDLPSKLLDDIWDFCDPF 180 Query: 353 RREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGY 412 + +L +L +QR VGI + A + G MVR SG A D R P+ Y Sbjct: 181 LKVCDDLEGLLTENRIFKQRNVGIAEVKLADAWGWGFSGVMVRGSGAAWDLRKAQPYECY 240 Query: 413 GLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDN--LPGG--------------- 455 L ++ + D R VR+ E+ ++ ++ L+ LP G Sbjct: 241 SELDFDIPIGKHGDCYDRYLVRMEEMRQSVRIMKQCLEKLRLPEGQGPVATRDHKIVPPS 300 Query: 456 --------PLMVEGFT------YIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAA 501 M+E F +P EAP+G+ + ++ + Y+ + RA Sbjct: 301 RAEMKRSMEAMIEHFKLYTEGHRVPAGEVYVAVEAPKGEFGVYLVSDGTNQPYKCKIRAP 360 Query: 502 TYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 ++A+ + ++ RG+ ++D IIGSLD + DR Sbjct: 361 SFAHLSAMDFLTRGHMLADVSAIIGSLDIVFGEIDR 396 >UniRef50_B4SJH6 NADH-quinone oxidoreductase subunit D 1 n=211 Tax=Proteobacteria RepID=NUOD1_STRM5 Length = 436 Score = 408 bits (1048), Expect = e-112, Method: Composition-based stats. Identities = 104/420 (24%), Positives = 178/420 (42%), Gaps = 55/420 (13%) Query: 172 NELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYN 231 + +N V+ +GP H + L +DGE ++ AD + +HRG EKLAE++ +N Sbjct: 18 RRDTEIRNYVMNLGPQHPAAHGVLRLVLEMDGETVVRADPHVGLLHRGTEKLAESK-PFN 76 Query: 232 EVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLA 291 + DR+ + + AY ++E +GI+ P RAQ IR + E+ R+ +HL+N+G Sbjct: 77 QSIGYMDRLDYVSMMCNEHAYVRAIETLLGIEAPIRAQYIRTMFDEITRILNHLMNIGTG 136 Query: 292 CHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLK------------ 339 G + + FR RE M E ++GAR GG+ R+L + Sbjct: 137 ALDLGAMAVMLYAFREREELMDCYEAVSGARMHATYYRPGGVYRELPEQMPKYKESRWKT 196 Query: 340 -------------DDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARD 386 + ++ + E +L +QRTVGIG + P+ A + Sbjct: 197 GKQLRRLNAAREGSLLDFIENFTREFPNRIDEYETLLTDNRIWKQRTVGIGVVSPQQAME 256 Query: 387 FSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMID 446 + G M+R SG A D R P+ Y + ++ D R R+ E+ + +I Sbjct: 257 WGMTGVMLRGSGVAWDLRKKRPYAKYDAVDFDIPVGTAGDCYDRYLCRVAEMRQSNRIIR 316 Query: 447 YGLDNLP--GGPLMVEGFT---------------------------YIPHRFALGFAEAP 477 +D L GP+M+ F +P EAP Sbjct: 317 QCVDWLRANPGPVMLHNFKVAPPSRQEMKSDMEALIHHFKLFSEGYQVPAGETYAAVEAP 376 Query: 478 RGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 +G+ + ++ K +R RA +A+ +L ++RG+ ++D +IG+ D + DR Sbjct: 377 KGEFGCYLISDGANKPFRVHLRAPGFAHLSSLDEIVRGHMLADVVAMIGTYDIVFGEVDR 436 >UniRef50_UPI00016C492D NADH dehydrogenase subunit D n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C492D Length = 409 Score = 407 bits (1046), Expect = e-112, Method: Composition-based stats. Identities = 110/403 (27%), Positives = 179/403 (44%), Gaps = 33/403 (8%) Query: 167 TYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAET 226 E I + + GP H + L +DGE I+ A + Y+H G EKL E Sbjct: 8 PVEDIAGADQEFLYTLNFGPQHPATHTTLRLILTLDGETIVKAVPDIGYLHSGFEKLGED 67 Query: 227 RMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLL 286 + +N+ + DR+ I FA+ A+ T+VE +GI++ R + +R IL E+ R+ HLL Sbjct: 68 -LDFNQYVTIVDRMNYISPFANECAWFTTVEKLIGIELTPRCKYLRTILAELARISDHLL 126 Query: 287 NLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTR 346 +G A G +GF+ F RE + E +G R +GG+ D+ D + R Sbjct: 127 CVGAAALDLGALTGFLYAFNAREKVYNIMEAASGQRFHPSYCRVGGLMADVNDDVVALIR 186 Query: 347 QLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRAD 406 + R+ ++ +L RT GIG L E A + S GP+ RASG RD R D Sbjct: 187 DFVKTFRKVHADICRLLNRNRIFIDRTKGIGVLSKEDAINTSCSGPVARASGVVRDLRKD 246 Query: 407 HPFVGYGLLP--MEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTY 464 P++ Y L ++ +G D +R VR+ E+ + +I+ ++NLP GP+ V+ Sbjct: 247 EPYLAYKELSGAFKIVCGKGGDCYNRYLVRMGEMLESWKIINAAVENLPSGPVNVDLNDK 306 Query: 465 I------------------------------PHRFALGFAEAPRGDDIHWSMTGDNQKLY 494 + P G E G+ + + K + Sbjct: 307 LTIPDKNATYRSIEGLIQHFELFMWNRRWETPVEEVYGANETANGELGFYLVADGTGKAF 366 Query: 495 RWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 R R R ++ ++ M+ G+ +SD P ++GSL+ + DR Sbjct: 367 RARTRPPSFIHFAVFPMMMEGHQISDVPAVLGSLNIIAAELDR 409 >UniRef50_B1ZUJ2 NADH-quinone oxidoreductase subunit D 2 n=5 Tax=Bacteria RepID=NUOD2_OPITP Length = 399 Score = 406 bits (1045), Expect = e-112, Method: Composition-based stats. Identities = 103/366 (28%), Positives = 170/366 (46%), Gaps = 4/366 (1%) Query: 175 GDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVT 234 + + +GP H + + +DGE + +A+ + Y+HR EK+ E R + + Sbjct: 35 APHETFTINLGPQHPAAHGVLRVLMRMDGEWVENAEPVIGYIHRMHEKMGENRT-WAKFL 93 Query: 235 FLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHF 294 + R+ + ++ A+ VE + I+VPERA+ IR I E+ R+ SH + G Sbjct: 94 PNTSRIDYLSAMHYTHAWVGVVERGLKIEVPERAEYIRVITSELNRIASHQVWWGALLLD 153 Query: 295 TGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRR 354 G + + F RE + + E L GAR TY GG+ D D + TR+ + MR Sbjct: 154 LGGFTPILYAFDDREKILDLLEGLCGARLTYCYYRFGGLYNDADDDFLKGTREFVKYMRP 213 Query: 355 EVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGL 414 ++ D++ + QR GIG + + R + GP++R SG A D R P+ Y Sbjct: 214 RLKMYRDLVTDNVILRQRLTGIGPISADTCRKYGATGPVIRGSGVAYDVRRAEPYSVYPK 273 Query: 415 LPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYI---PHRFAL 471 L ++ + CD ++R VR++E+ +LN+I+ LD + GP M + P Sbjct: 274 LQFKIPTYPECDSMARYLVRMDEMEESLNIIEQCLDLIQPGPFMAPKVPRVIRLPAGDYT 333 Query: 472 GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPC 531 EA RG + ++ + YR R R ++ N RG + DA ++GSLD Sbjct: 334 YAVEAARGRFMVRVVSDGKENPYRARLRTPSFGNLSLFEETSRGMLLPDALAMMGSLDLV 393 Query: 532 YSCTDR 537 DR Sbjct: 394 IPDIDR 399 >UniRef50_A0B812 F420H2 dehydrogenase subunit C n=6 Tax=Archaea RepID=A0B812_METTP Length = 390 Score = 404 bits (1039), Expect = e-111, Method: Composition-based stats. Identities = 119/369 (32%), Positives = 184/369 (49%), Gaps = 5/369 (1%) Query: 173 ELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNE 232 E+ ++ +GP H P L ++GE + A + Y+H+G+EK+ E R Y + Sbjct: 23 EIKSDSEMIMHMGPQHAIVPGPFLLDLLIEGERVKKAFLDVGYIHKGIEKIMENRT-YLQ 81 Query: 233 VTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLAC 292 +DR+C + ++ AY +VE +GI PERAQ IR IL E+ R+ SHLL G Sbjct: 82 GIVYTDRMCYLASITNNEAYCGAVEKLLGITPPERAQYIRVILAELSRIQSHLLGTGEFL 141 Query: 293 HFTGFDS--GFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQ 350 G + F RE + + E +TGAR T+ GG+R DL + R + + Sbjct: 142 TLLGAATYSPFQYMIIDREDIVYLMESITGARITHTFVRFGGVRNDLPDGFADKARPILK 201 Query: 351 QMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFV 410 +MR +E +D+L S P +R GIG L P AR GP +RAS D R + P + Sbjct: 202 RMRERTEEYMDLLHSDPIYTRRMRGIGVLSPGDARRLGVSGPPLRASDTPYDMRREDPIL 261 Query: 411 GYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPL--MVEGFTYIPHR 468 Y L +V + + D +R++VR+ E+ ++++I+ LD +P GP+ + Sbjct: 262 VYPDLDFKVVTRKAGDAEARVEVRLEEILESIHIIEQCLDQIPDGPIQEKLPKKIKPEPG 321 Query: 469 FALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSL 528 A E PRG+ + ++ ++K YR + R YA L +L G V+D I GS+ Sbjct: 322 EAYYRVEDPRGEMGFYVVSDGSEKPYRVKVRGPVYAYMQALPPLLEGAYVADVVAIAGSM 381 Query: 529 DPCYSCTDR 537 D C S DR Sbjct: 382 DACTSEVDR 390 >UniRef50_D2L9H0 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L9H0_9DELT Length = 494 Score = 404 bits (1039), Expect = e-111, Method: Composition-based stats. Identities = 130/457 (28%), Positives = 193/457 (42%), Gaps = 22/457 (4%) Query: 81 EKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDD 140 + + +D YPS+TP P W ERE+ + +G++P G P + Sbjct: 58 DHDGRLAFCRTAPLDR----YPSLTPDCPQCHWFERELYEQWGILPDGHPWLK------- 106 Query: 141 WPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLF 200 P+R + RP P Y G++ + V +GP+H EPGHFR Sbjct: 107 ------PIRFTTPPGAGRPRPAPGVTDY--FQVRGEEVHEVA-VGPVHAGIIEPGHFRFQ 157 Query: 201 VDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAM 260 GE + + L + HRG+E + V F+ + G HS A+ +E Sbjct: 158 CFGEEVFHLEISLGFQHRGIEAMLAGGPDPRTVHFM-ETAAGDTSIGHSLAHAAVIEALS 216 Query: 261 GIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTG 320 G P R + I LE+ERL +H +LG GF R+R + M +L G Sbjct: 217 GRTAPPRGRAIGRAALELERLANHTGDLGALAGDVGFLPTLSYCGRIRGDFLNMTALLCG 276 Query: 321 ARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLD 380 R GL GG D+ + + RR ++L ++ + R G G+L Sbjct: 277 NRFGRGLVRPGGTAFDVDTGLLRVLAGRLEAARRAAFGAAELLFASSTVLARFEGTGKLT 336 Query: 381 PEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYT 440 E A D VGP RA G ARD R P G G + + DV +R VR E+ Sbjct: 337 AEKALDLGLVGPPARACGLARDARRTFPQPGAGARDIALSLHDFGDVYARGLVRRLEMEA 396 Query: 441 ALNMIDYGLDNLPGGPLM-VEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCR 499 +L+ +D L +LP GP + P R A+G E RG+ H ++TG + + ++ Sbjct: 397 SLDFLDGLLADLPDGPTRELLPGRLPPGRLAVGLIEGWRGEIRHVAVTGPDGRFLAYKII 456 Query: 500 AATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 ++ NW L LRG +SD PL S + Y D Sbjct: 457 DPSFHNWFGLAQALRGQQISDFPLCNKSFNLSYCGHD 493 >UniRef50_UPI0001C31275 NADH dehydrogenase I, D subunit n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31275 Length = 413 Score = 403 bits (1036), Expect = e-111, Method: Composition-based stats. Identities = 94/389 (24%), Positives = 165/389 (42%), Gaps = 28/389 (7%) Query: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235 +++ V +GP H ++ L ++GE + D + YVH G+EK AE + Y +V Sbjct: 26 EQELMTVNMGPHHPSTHGVLRLILTLEGEMVRDVKPIIGYVHTGIEKTAEQK-AYWKVIP 84 Query: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 295 + +R+ + + ++ A+ +VE + + VP+RAQ +R I +E+ R+ SHL+ LG +C Sbjct: 85 VVERMDYLSYYFNAYAFCGAVEKLLEVDVPKRAQYLRVIHMELNRIMSHLVWLGTSCIDL 144 Query: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 355 G + FR RE + + E+ +G R +GG+ D+ + + ++ + MR Sbjct: 145 GAIGVWWYCFREREQVLDLFEMSSGQRMHTRYFQVGGVIEDIPRGWTERVKRFTKTMRER 204 Query: 356 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415 ++ +L QR G +D E GP++RA+G+ D R P+ Y Sbjct: 205 SEQYSALLDRNEIFLQRMRHTGTVDEETLLGLGVTGPLLRATGNPWDLRKAAPYCSYDDF 264 Query: 416 PMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFT------------ 463 + D R +VR E+ + +ID +D LP GP + E Sbjct: 265 RFRIPVGTEGDNYDRYRVRHAEILESCAIIDQAIDGLPEGPFITEDRKVALPPRHELATS 324 Query: 464 ---------------YIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPT 508 +P E+PRG+ + + + K R R ++ N Sbjct: 325 MEALIHHFKLVTEGFRVPPGEVYHPIESPRGELGCFVRSDGSSKPARVHMRDPSFVNLQA 384 Query: 509 LRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 R ++D + LDP DR Sbjct: 385 TAAATRDTYIADLVATLAMLDPILGGVDR 413 >UniRef50_C7N626 Ech hydrogenase subunit E n=25 Tax=cellular organisms RepID=C7N626_SLAHD Length = 362 Score = 401 bits (1031), Expect = e-110, Method: Composition-based stats. Identities = 124/363 (34%), Positives = 187/363 (51%), Gaps = 4/363 (1%) Query: 177 KKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFL 236 K V+P GP H EP H L V E +I+ ++ ++HRG+EKL E + ++ ++ Sbjct: 2 GKATVIPFGPQHPVLPEPLHLDLVVQDEKVIEVIPQIGFIHRGLEKLVEKK-DIHQFIYV 60 Query: 237 SDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTG 296 ++R+CGIC F HS Y +VE MG++VP RA+ +R IL E+ R+HSHLL LGLA G Sbjct: 61 AERICGICSFGHSLGYAETVEKLMGVEVPRRAEYLRVILHELSRIHSHLLWLGLAADAFG 120 Query: 297 FDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREV 356 F++ FM +R+RE + + E TG R IGG+ RD+ +++ Q MR E Sbjct: 121 FEALFMHSWRIRERVLDIFEATTGGRVILSAVQIGGVIRDIDDEELKQISATLDGMRSEY 180 Query: 357 QELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLP 416 EL+ L+ ++ R V +GRL A D VGP RAS D R YG L Sbjct: 181 AELMATFLNDTSVRSRLVNVGRLTQTQAEDLCMVGPFARASNVKFDCRMLGN-GAYGELE 239 Query: 417 -MEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHR-FALGFA 474 + + D +R++VR EV ++++I + +P + P A Sbjct: 240 NFQPILDDEGDCYARVRVRCKEVIQSIDIIQELIAKIPHDGIGERSKLTPPDGAQAANVL 299 Query: 475 EAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSC 534 E PRG+ +++ ++ L R R R T N L G ++D P I+ ++DPC SC Sbjct: 300 EQPRGECYYYARGNGSKNLERMRMRTPTSQNLAGLVAACEGAELADVPNILLTIDPCISC 359 Query: 535 TDR 537 T+R Sbjct: 360 TER 362 >UniRef50_C6HVM5 Putative hydrogenase-3 subunit (HycE) n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HVM5_9BACT Length = 512 Score = 400 bits (1028), Expect = e-110, Method: Composition-based stats. Identities = 124/453 (27%), Positives = 198/453 (43%), Gaps = 8/453 (1%) Query: 84 TKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPD 143 + + + + + + +PS++ P A ER + D++GLIP GL D R + W Sbjct: 67 REGLVLLSLSLPKDAVSFPSLSSIFPPAARFERTIHDLFGLIPDGLADLRPWIDHGLWSH 126 Query: 144 ELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDG 203 PL + Y F+ GD + +P+GP+H EPGHFR V G Sbjct: 127 --PPLSHTPSPLTR----LAQGMDYPFVRVRGDGVHE-IPVGPVHAGIIEPGHFRFSVVG 179 Query: 204 ENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQ 263 E ++ + R+ Y H+G+ +L R E L+ R+ G A S A++ +VE A+ I+ Sbjct: 180 EKVLRLETRMGYTHKGIARLFRGRN-LPEAARLASRISGDSAVATSLAFSKAVEEALDIE 238 Query: 264 VPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARK 323 + E + +RAILLE ER+ +HL +LG + G F +RE ++ L G R Sbjct: 239 ISEGVRFVRAILLERERIANHLADLGALGNDAGLAVALSLFHPLREAMHRINLSLFGHRL 298 Query: 324 TYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEI 383 + + GG+ L + ++++ EV L + ++ R G L PE+ Sbjct: 299 LFDSVVPGGVSTGLSGAMIETLLLENERLQAEVSLLERIYADHGGLQDRFQNTGILSPEV 358 Query: 384 ARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALN 443 A G RASG D R DH + + DV SR+++R E++ +L Sbjct: 359 AGRLGIGGVAGRASGQGWDLRVDHREDPVHRFAPALALDHIGDVASRVRIRFFEIFESLR 418 Query: 444 MIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATY 503 + L + PG + R G E RG+ + W + L + Sbjct: 419 LTHALLTSFPGPDICATIPDPPAPREGAGIVEGFRGEVLGWVRILPGKILADAHIADGSP 478 Query: 504 ANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 W L + GN V+D PLI S +P YS +D Sbjct: 479 LLWHALEASVPGNLVADFPLINKSFNPSYSASD 511 >UniRef50_D2PDB9 NADH dehydrogenase (Ubiquinone) n=10 Tax=Sulfolobaceae RepID=D2PDB9_SULIS Length = 410 Score = 400 bits (1027), Expect = e-110, Method: Composition-based stats. Identities = 119/415 (28%), Positives = 192/415 (46%), Gaps = 38/415 (9%) Query: 152 SMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFV--DGENIIDA 209 + Q + EFI G+ + +GP H S GH R+FV +G+ I D Sbjct: 5 PQNEAQEQLLAATGMSVEFIPVQGE-----LNVGPQHPGS---GHMRIFVKLNGDIIEDV 56 Query: 210 DYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQ 269 D + YVHR +EKL+E R Y + L +R + + Y +VE +G+ VPERAQ Sbjct: 57 DLDVGYVHRTVEKLSENRN-YMHLIPLVERPAILDSIHMNLGYIIAVEKILGVDVPERAQ 115 Query: 270 MIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNL 329 +R+ EV R+ SHL LG+ F G +GFM F RE + + E LTGAR T + Sbjct: 116 YLRSFAAEVNRIASHLYGLGILSIFLGHSTGFMWGFGDREVWVTILEALTGARVTNSYVI 175 Query: 330 IGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSN 389 GG+RRD+ ++ T + RR +++ + P++ R +G + E A + Sbjct: 176 PGGVRRDISQEIKDMTLKAISYQRRRLEDWKKIFFYNPSIRARLENVGVMSKENAIKWGA 235 Query: 390 VGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGL 449 VGP +RASG D R P+ Y L E+ + D ++R VR+ E+ ++ +++ + Sbjct: 236 VGPNLRASGVYYDVRKIEPYGAYDKLDFEIPVYKEGDGLARGLVRLEEIEQSMRILEQII 295 Query: 450 DNLPGGPLMVEGF---------------------------TYIPHRFALGFAEAPRGDDI 482 N+P G ++ + F P A+ EA RG+ + Sbjct: 296 KNIPEGNILSDRFFKQIPPTRLKKYWETYRRIVLPGYYASFRPPKGEAISRVEAGRGELV 355 Query: 483 HWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 ++ ++ + K YR R +Y + + + +G+ +D I GSLD DR Sbjct: 356 YYVVSDGSPKPYRLRMITPSYRSIYVFKELCKGSRYADLVSIYGSLDYFPPEADR 410 >UniRef50_D1YVS8 Ech hydrogenase subunit E n=1 Tax=Methanocella paludicola SANAE RepID=D1YVS8_METPS Length = 360 Score = 398 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 117/360 (32%), Positives = 192/360 (53%), Gaps = 4/360 (1%) Query: 180 NVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDR 239 + GP H EP +L DGE I D D YVHRG+EK E YN+ +LS+R Sbjct: 3 TTIQFGPQHPVWIEPLRLKLTTDGELIKDVDLEAGYVHRGLEKKFE--WDYNKAAYLSER 60 Query: 240 VCGICGFAHSTAYTTSVE-NAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFD 298 VC IC HST + VE G+++P RA +IR I+LE+ERLHSH L +GL GF+ Sbjct: 61 VCAICTQHHSTCFCLGVEGTMAGLELPRRAAIIRTIMLELERLHSHFLAIGLTLEAIGFE 120 Query: 299 SGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQE 358 + FM FR RE + + E TG R +G+N++GG+ R++ + + + + E Sbjct: 121 NMFMLCFRHREQVLDVFERTTGNRVLHGINIVGGVTRNIGPEMAKEILDFCDDIEKRAHE 180 Query: 359 LVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPME 418 + +++S+ ++QR G+G + ++A++ VGP+ R S D R P + Y + + Sbjct: 181 IERIIVSSYTIKQRMQGVGVMTEKMAKELGVVGPVARGSNVPYDVRHAAPHLLYREVKVT 240 Query: 419 VHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGP-LMVEGFTYIPHRFALGFAEAP 477 E+ D +R VR+ E++ ++++I + L G P + +P + EAP Sbjct: 241 PIVEKDGDCWARSLVRVRELFQSIDLIRQLVPLLDGTPDELFAKSKAMPEGENIARVEAP 300 Query: 478 RGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 RG+ ++ +++L R + R +TY N + +++G+ ++D LI + DPC C DR Sbjct: 301 RGELFYYVRGKKSKELDRVKVRTSTYGNGLGIAPLIKGSHIADVGLITITFDPCIGCFDR 360 >UniRef50_A9G9T3 NADH-quinone oxidoreductase subunit D 2 n=5 Tax=Myxococcales RepID=NUOD2_SORC5 Length = 388 Score = 398 bits (1022), Expect = e-109, Method: Composition-based stats. Identities = 97/370 (26%), Positives = 160/370 (43%), Gaps = 10/370 (2%) Query: 177 KKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFL 236 + +GP H ++ F + DGE I A + Y+HR +EK+ E R Y+ Sbjct: 20 DDEMTLNMGPHHPSTHGVLRFVISTDGEIIRKAVPDVGYLHRSIEKIGE-RCTYSGFMPY 78 Query: 237 SDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTG 296 +DRV I + A+ ++ E MGI+VP+RAQ +R I E+ R+ SH++ LG G Sbjct: 79 TDRVDYIAAMFANEAWASACEKLMGIEVPKRAQYLRVISCELNRIGSHMIALGAMAMDVG 138 Query: 297 FDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREV 356 + F R RE E L GAR T+ + IGG+ D+ K + + + + Sbjct: 139 AVTPFPWALREREYINDFIEELCGARLTFNYHRIGGVSFDMPKGWADKVKHWLDRFEPIM 198 Query: 357 QELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLP 416 E ++ +R + + E A+D+ VGP +R SG D R + + Y L Sbjct: 199 VEFDRLISLNDIFIKRLANVAVVTAEEAKDWGLVGPNLRGSGVKWDLRKEDAYSVYPELE 258 Query: 417 MEVHSEQG-----CDVISRLKVRINEVYTALNMIDYGLDNL---PGGPLMVEGFTYI-PH 467 +V +G D R VR+ E + ++ LD + P ++ + + P Sbjct: 259 FDVPVGRGRYGTVGDCWDRFYVRVEECRESAKILRQALDKIDEHPEDDILGKLPKKMRPD 318 Query: 468 RFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGS 527 A E+ RGD + + ++ YR R R ++ + G ++D +I S Sbjct: 319 GEAYARIESARGDMGCYVIGRGAEEAYRARFRTGSFTAMAMIEAKSPGLFLADLVALIAS 378 Query: 528 LDPCYSCTDR 537 D DR Sbjct: 379 FDVVAPEIDR 388 >UniRef50_D2R4P3 NADH dehydrogenase (Quinone) n=3 Tax=Planctomycetaceae RepID=D2R4P3_9PLAN Length = 401 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 101/385 (26%), Positives = 167/385 (43%), Gaps = 26/385 (6%) Query: 178 KNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLS 237 +V +GP H ++ L DGE + + L Y+HR EK+ E + + Sbjct: 18 DEMLVNMGPQHPSTHGVLRLVLRTDGEIVSQVEPHLGYLHRCAEKIGENLTP-RQWIPYT 76 Query: 238 DRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGF 297 DR+ + + + +VE +G Q+ E+A+ +R I+ E+ R+ SHL+ +G G Sbjct: 77 DRMDYLAAMNMNLGWALTVEKLLGHQISEKARHLRVIIAEMGRIASHLVGMGAYGLDLGT 136 Query: 298 DSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQ 357 S F+ FR RE + + E GAR TY GG DL K + + + +Q +Q Sbjct: 137 FSPFLYAFREREKILDLFEEACGARLTYSYLTPGGATADLPKGWLQKCEEFLKQFEPVIQ 196 Query: 358 ELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRAD--HPFVG-YGL 414 E +L + +RT IG + E+A D+ GP++R SG D R D + Y Sbjct: 197 EYHALLTTNSIFVKRTAAIGIMSAEMAIDYGCTGPVLRGSGVDYDLRRDGEERYTEMYDG 256 Query: 415 LPMEVHSEQG------------------CDVISRLKVRINEVYTALNMIDYGLDNLP--G 454 EV + D R VR+ EV +++++ ++ Sbjct: 257 YAFEVIVSRNGHYPADHDYPPVPKEAVLGDCWHRFYVRMLEVVQSIDLVRQAIERYSTAS 316 Query: 455 GPL--MVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYM 512 G ++ T +P A E PRG + ++ N +R R R++++ N + Sbjct: 317 GDWGQPIKLTTKLPKGEAYLETECPRGQMGFYIVSDGNAIPWRVRARSSSFCNLSITADL 376 Query: 513 LRGNTVSDAPLIIGSLDPCYSCTDR 537 RG ++D P I+GSLD DR Sbjct: 377 CRGCLIADVPAIVGSLDIVMGEIDR 401 >UniRef50_A1KEQ8 Possible formate hydrogenase hycQ (FHL) n=14 Tax=Actinomycetales RepID=A1KEQ8_MYCBP Length = 492 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 136/503 (27%), Positives = 225/503 (44%), Gaps = 23/503 (4%) Query: 36 TVKVNYLPEVVEFLYYKQGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVD 95 V L E L+ L+++ +D+ V Y+ + + + V Sbjct: 10 RVSERGLIATAEQLWADSF-RLALVAAHDD---GDSLRVVYLF-LAGYPDRRVELEYVVP 64 Query: 96 ANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDY 155 A+ PE S+ A ERE+ D+YG+ PVG P RRLV WP + +P+R D+ Sbjct: 65 ADNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWP-DWHPMRTDAGPA 123 Query: 156 RQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFY 215 TD + F+ G +P+GP+H EPGHFR V GE I+ RL++ Sbjct: 124 ----PEFTDTGAFPFLAVEGPGVYE-IPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWF 178 Query: 216 VHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAIL 275 VHRG+EKL R L++R+ G AH+ A++ ++E+A+GI++P +RA++ Sbjct: 179 VHRGIEKLFHGR-PATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEIHRLRALI 237 Query: 276 LEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRR 335 +E+ERL++H +LG + G+ R+RE ++ +TG R G GG+ Sbjct: 238 VELERLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVAL 297 Query: 336 DLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVR 395 L D + ++ E+ + L+ + R G L P+ A +G + R Sbjct: 298 RALPDTDE-----LAALAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVAR 352 Query: 396 ASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGG 455 ASG D R +HP + LP+ DV++R VR +E + + + +++ G Sbjct: 353 ASGLRSDARVEHPTIV---LPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVESH-TG 408 Query: 456 PLM--VEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYML 513 P+ +G E RG +H + ++ R + ++ NWP L + Sbjct: 409 PIEYAATLHPVGAPSSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAM 468 Query: 514 RGNTVSDAPLIIGSLDPCYSCTD 536 V D PL S + Y+ D Sbjct: 469 ADTIVPDFPLANKSFNQSYAGND 491 >UniRef50_Q21TB4 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21TB4_RHOFD Length = 498 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 122/508 (24%), Positives = 205/508 (40%), Gaps = 33/508 (6%) Query: 37 VKVNYLPEVVEFL--YYKQGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEV 94 + L E+++ + G L LFG +L + V + ++ + +R Sbjct: 15 IAATSLQELMQLCGQRLQAGERLLTLFGRPAPELGVNIIVVTAV-LQPAQGALVILRATA 73 Query: 95 DANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMD 154 + Y +T + PAA ERE+ + GL P P + + Sbjct: 74 QRGE-HYRCLTAQHPAAQIFERELWEQTGLFPDDHPWLKPV------------------- 113 Query: 155 YRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLF 214 R Y F G + + V +GP+H + EPGHFR GEN+ + +L Sbjct: 114 -RFEGERQQRMLEYPFFKVRGQEVHEV-GVGPIHASVIEPGHFRFMCLGENVHHLEIQLG 171 Query: 215 YVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAI 274 Y HRG+E L R ++T L + +CG A++ Y ++E V Q RAI Sbjct: 172 YQHRGVEGLLLRR-PVWQLTPLVESICGDSAVAYAWGYGAALELMSNQPVAPAIQASRAI 230 Query: 275 LLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIR 334 LE+ER+ HL LG F G + R+R + ++ + G R G G Sbjct: 231 ALEMERIAMHLATLGGMATDIAFLQGGATYGRLRTAIINASQRVCGNRFGRGWIRPGQ-A 289 Query: 335 RDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMV 394 + L + + + + ++ ++L+ +++ R G G + + A D GP+ Sbjct: 290 KPLSEALQQDLTRTLRAFAPDFTQINQLMLAARSVQARLHGTGTVSQQAALDLGLTGPVA 349 Query: 395 RASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLP- 453 RASG A D R P YG P+ + +E D +R+++R+ EV +L + L + Sbjct: 350 RASGVALDHRTQWPGAAYGHAPLPMVTEPDGDCWARMRLRMREVDASLAWLLQLLGDTTL 409 Query: 454 ----GGPLMVEGFTYI-PHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPT 508 G + + E RG + T +L ++ + + ANW Sbjct: 410 NLSQAGQAQSSTPAALQAEALCVSLVEGTRGPVLQVLETSAKGELRHYKVQDPSTANWFG 469 Query: 509 LRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 L + +R N +SD P+ S D Y D Sbjct: 470 LAFAMRDNAISDFPICNKSFDLSYCGND 497 >UniRef50_C9RKY1 NADH dehydrogenase (Quinone) n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RKY1_FIBSS Length = 379 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 97/370 (26%), Positives = 167/370 (45%), Gaps = 4/370 (1%) Query: 171 INELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGY 230 + + + + +GP H ++ L +DGE I++ Y+HRGMEK AE+ M Y Sbjct: 11 LERKSNTEEFFINMGPQHPSTHGALRLTLRMDGETIVEVVPHFGYIHRGMEKQAES-MSY 69 Query: 231 NEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGL 290 + +SDR + ++ ++E M + VP R + IR +L E+ R+ SHL+ G Sbjct: 70 LQYIAMSDRQDYLTAIQNNLGVVIALEKGMNVGVPLRGEYIRVMLQELGRIASHLVFYGC 129 Query: 291 ACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQ 350 G + + F+ RE + E +TG+R T GG R D+ + + + Sbjct: 130 FGGDLGGQTCLLFGFKEREMIHDILEEVTGSRLTTNFFRPGGSRYDVPDTFIPRVKAFLD 189 Query: 351 QMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFV 410 M +++ L + +R++GIG L E A + GP++RASG D R +P+ Sbjct: 190 HMEDTMKDYERFLSKNIIVLERSIGIGVLSKEDAIAYGCSGPVLRASGVNFDVRRANPYS 249 Query: 411 GYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLP-GGPLMV-EGFTYIPHR 468 Y L +V D R K+RI E++ ++ ++ ++ P GP E +P Sbjct: 250 IYDQLDFDVPVFHNGDCYDRYKIRIAEIHESMKILRQCVEKFPTEGPWRSKEKPVRLPVG 309 Query: 469 FALGFAEAPRGDDIHWSMTGDNQ-KLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGS 527 E +G + + K YR R ++ + + M +G+ +SD I+ + Sbjct: 310 RYYSEIETAKGLYATYVVAATTGEKPYRIHTRGPSFPHIAAINKMAQGHKISDLVTIMAT 369 Query: 528 LDPCYSCTDR 537 LDP DR Sbjct: 370 LDPVIPEIDR 379 >UniRef50_C7I0C0 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=1 Tax=Thiomonas intermedia K12 RepID=C7I0C0_THIIN Length = 532 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 127/448 (28%), Positives = 200/448 (44%), Gaps = 10/448 (2%) Query: 93 EVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDS 152 V PS+ ++P W ERE+ D+YGL G P+ LVL + P + PL Sbjct: 92 RVRPEDRTLPSLANKLPLLGWYEREMMDLYGLRFEGHPEPNPLVLHEGEPRDPAPLASGF 151 Query: 153 MDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYR 212 + ++ +P GP+ E F F GE I+ R Sbjct: 152 DPAAPARDYAPLP---PIVPQVQGPDIQRLPFGPVRADIVESAQFLFFYIGEGILHYHPR 208 Query: 213 LFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIR 272 LFY HR ME + L++RV GI AH+ A+ +VE AMG + P RA+ +R Sbjct: 209 LFYKHRAMEGRFQGATLATGAV-LAERVSGIDSVAHALAFAQAVEGAMGWRAPPRARYLR 267 Query: 273 AILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGG 332 +L E+ERL++HL LG T G + + E ++ LTG+R GL GG Sbjct: 268 VVLAELERLYNHLHYLGHLSKTTTLKVGEAEGHLLEERVKQINGRLTGSRFLRGLITPGG 327 Query: 333 IRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGP 392 +RRDL D+ + + E+ + L +T + R + GRL+ ++A D GP Sbjct: 328 LRRDL---DITGLDKALDSVNDEIDRYLQRLENTRSHLDRLMTTGRLERQVAFDQGACGP 384 Query: 393 MVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNL 452 + RAS RD R DHP+ Y + V +QG D +R VR+ E+ +L +I + Sbjct: 385 IERASNLDRDLRRDHPYANYEKVRFSVPVQQGGDAHARSMVRMEEIRESLAIIRQTIGRT 444 Query: 453 PGGPLMVEGF--TYIPHRFALGFAEAPRGDDIHWS-MTGDNQKLYRWRCRAATYANWPTL 509 G ++ P LG+ EA RG ++ ++ D +L R + + +++NW Sbjct: 445 KPGEVLRFDVMEDADPQGEGLGWVEATRGGLLYAVHLSEDRTRLQRVKIKEPSFSNWRVF 504 Query: 510 RYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + + + + D + S + DR Sbjct: 505 PFTVEDSNMMDYAINEASFGLSIAGADR 532 >UniRef50_C1XWY7 Ni,Fe-hydrogenase III large subunit n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XWY7_9DEIN Length = 426 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 130/446 (29%), Positives = 193/446 (43%), Gaps = 27/446 (6%) Query: 96 ANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDY 155 + +PS+ PA W ERE+ + +GL+P G P + L S+ Sbjct: 2 EAQGSFPSLAEEFPALDWFERELWEDHGLVPEGHPSLKPLRNH------------HSVYS 49 Query: 156 RQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFY 215 RQ Y F G + VP+GP+H EPGHFR V GE I+ + RL Y Sbjct: 50 RQAVPKGIVRLPYPFDRVEG---LHEVPVGPVHAGIIEPGHFRFSVLGERILHLEVRLGY 106 Query: 216 VHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAIL 275 HRG+E+L + + + L++R G AH+ A+ +VE A+G++VP RA +R +L Sbjct: 107 QHRGVEQLFQGK-SLEQALLLAER-AGGEPVAHALAFCQAVEAALGVEVPPRAYRLRRVL 164 Query: 276 LEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRR 335 LE+ERL HL +L G+ Q +VR E LTG R +GG+ Sbjct: 165 LELERLFGHLGHLAGLFTDIGYAYAATQVGKVRALLQGQLERLTGHRYGRNALTVGGVGF 224 Query: 336 DLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVR 395 D+ + ++ R ++ E + + L P + R +G L AR VGP R Sbjct: 225 DIDPETQVEVRGALAKLAAEAETHLAAALKHPMVLDRLRYVGTLTQAQARWLGLVGPAAR 284 Query: 396 ASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGG 455 A G RD R D G DV++R +V E+ +D L LP G Sbjct: 285 ACGLGRDLRQDDALYQ----TFTPVVRSGGDVLARAQVYAEELRQGFVYLDRFLGALPQG 340 Query: 456 PL----MVEGFTYIPH-RFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLR 510 + +P A EA RG+ +W N ++ R + ++ NW L Sbjct: 341 EVANGPTTPRVDPVPATAEAYSRVEAGRGELFYWVRLRGN-RVERVKIVDPSFKNWRALE 399 Query: 511 YMLRGNTVSDAPLIIGSLDPCYSCTD 536 +RG + D P+I S D Y+ D Sbjct: 400 LAVRGMGLPDFPIINKSFDLSYAGCD 425 >UniRef50_A5FKI7 NADH-quinone oxidoreductase subunit D n=17 Tax=Bacteria RepID=NUOD_FLAJ1 Length = 412 Score = 390 bits (1003), Expect = e-107, Method: Composition-based stats. Identities = 102/406 (25%), Positives = 178/406 (43%), Gaps = 29/406 (7%) Query: 159 PAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHR 218 P A+ + + + +V+ +GP H + L +DGE I++A+ + Y+HR Sbjct: 7 PPEHRYAKIIKERHNEDGSELSVLNLGPTHPATHGIFQNILLMDGERILEAEPTIGYIHR 66 Query: 219 GMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEV 278 EK+AE R Y ++T L+DR+ ++ + ++E +GI+VP+RAQ +R I++E+ Sbjct: 67 AFEKIAENRPFY-QITPLTDRMNYCSSPINNMGWWMTLEKLLGIEVPKRAQYLRVIVMEL 125 Query: 279 ERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLL 338 R+ H++ + TG +GF+ F+ RE ++ E + GAR T + IGG RD Sbjct: 126 ARITDHIICNSILGVDTGAYTGFLYVFQFREKIYEIYEEICGARLTTNMGRIGGFERDWS 185 Query: 339 KDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASG 398 + + + ++ +E ++ RTV +G + E A + GP +RA+G Sbjct: 186 PEAFRKLDKFLEEFPPAWKEFENLFERNRIFLDRTVNVGGITAEKAMAYGFTGPNLRAAG 245 Query: 399 HARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGG-PL 457 D R HP+ Y V + D R VR EV+ +L++I L+ +P G Sbjct: 246 VDYDVRVAHPYSSYEDFDFIVPVGKSGDTYDRFCVRNAEVWESLSIIRQALEKMPAGNEY 305 Query: 458 MVEGFTY---------------------------IPHRFALGFAEAPRGDDIHWSMTGDN 490 E Y +P E G+ + T + Sbjct: 306 HAEVPDYYLPPKEDVYNSMESLIYHFKIVMGEVPVPVSEIYHAVEGGNGELGFYLATDGS 365 Query: 491 QKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 + YR R + + M++G +SDA +I+ SL+ D Sbjct: 366 RTPYRLHFRRPCFIYYQAFPEMIKGALLSDAIIILSSLNVIAGELD 411 >UniRef50_Q3JMD7 Hydrogenase subunit n=33 Tax=Burkholderia RepID=Q3JMD7_BURP1 Length = 567 Score = 390 bits (1003), Expect = e-107, Method: Composition-based stats. Identities = 155/571 (27%), Positives = 241/571 (42%), Gaps = 68/571 (11%) Query: 23 LDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVLFGNDERKLNGHYAVYYVLSMEK 82 + A + +V + E + GG L L+G + G Y V ++ Sbjct: 7 IASAAGQPRAVFASVDADAWTRAAETIR-TAGGRLVTLWGGE--PAAGRYEVCAAYELDD 63 Query: 83 GTKCWITVRVEVDA------------------------------NKPEYPSVTPRVPAAV 112 G + +R+ V+ YP ++ +A Sbjct: 64 G---LLWLRLPVEPAANVGREAGDTSNAGNASNAGDADGVRQRGEAGSYPDLSAIFASAT 120 Query: 113 WGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFIN 172 +R + D+ GL G D R + WP + +PLR+ + + T D Y F+ Sbjct: 121 RMQRALHDLVGLRARGAHDTRPWLAHGAWPRDYHPLRRRATGGERFEYATAD---YPFVP 177 Query: 173 ELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNE 232 GD + + +GP+H EPGHFR V GE ++ + RL Y HRG+E+L E R Sbjct: 178 VAGDGVHE-IAVGPIHAGVIEPGHFRFSVVGEKVLRLEERLGYAHRGVERLFE-RADALA 235 Query: 233 VTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLAC 292 + L+ R+ G A + AY ++E A+ I+VP+RA +RA+LLE ER+ +HL +LG Sbjct: 236 GSRLAARIAGDSTVAFAWAYCMALEQALRIRVPDRALRLRALLLERERVANHLGDLGALG 295 Query: 293 HFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQM 352 + GF G F R++E ++M + + G R + GG+ RD+ DD ++ Sbjct: 296 NDAGFAVGLAHFSRLKEDWLRMQDRIFGHRYLMDAIVPGGVARDIAADDAAAIVAQCDRI 355 Query: 353 RREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGY 412 REV+ + + ++ R G GRLD + F G RASG RD RADH Y Sbjct: 356 EREVRAMQTIYDDQSGLQDRFAGTGRLDAQAVAHFGVCGLAARASGQPRDVRADHRLAPY 415 Query: 413 GLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFT--YIPH--- 467 L ++V + DV +R+ VR E Y ++ I L +LP L E +P Sbjct: 416 DALRIDVSRDARGDVAARVAVRFAETYESMRAIRALLADLPDDGLAAEIAPGATVPGARA 475 Query: 468 ----------------------RFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYAN 505 R +G+ E RG + R C ++ N Sbjct: 476 DAGGACEGEEGGDAAFCPGDARRRGIGWIEGWRGPVFVALELDARGAVARCHCHDPSWHN 535 Query: 506 WPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 WP L + + GN V+D PLI S + Y+ D Sbjct: 536 WPALEHAIIGNIVADFPLINKSFNLNYAGHD 566 >UniRef50_Q67P19 NADH-quinone oxidoreductase subunit D 1 n=1 Tax=Symbiobacterium thermophilum RepID=NUOD1_SYMTH Length = 404 Score = 390 bits (1002), Expect = e-107, Method: Composition-based stats. Identities = 101/400 (25%), Positives = 177/400 (44%), Gaps = 32/400 (8%) Query: 169 EFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRM 228 + E + + IGP H + +L ++GE ++ A+ ++H G+EK AE + Sbjct: 6 DLHLEEQRPERMTLSIGPHHPATHGVLRVKLELEGETVVKAEPETGFLHTGIEKTAE-HL 64 Query: 229 GYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQ--VPERAQMIRAILLEVERLHSHLL 286 +N+ T + DR+ + +++T Y +VE +GI+ +PE+A++ R ILLE+ R+ SHL+ Sbjct: 65 TWNQATTVMDRMDYLSPISNNTGYVMAVEKLLGIEDRIPEKARVTRVILLELNRVASHLV 124 Query: 287 NLGLACHFTG-FDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQT 345 LG G + F +R+ + + E TG R +GG+ DL + Sbjct: 125 GLGTGGLDYGNIGTPIFWAFELRDRILDIFEHTTGQRMNPSYMRVGGLAYDLPHNFKEMV 184 Query: 346 RQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRA 405 + +QEL DV+L P R G+ + E A + G +R +G D R Sbjct: 185 EDFLKVAPGRIQELKDVMLHNPIFVDRAKGVSVITYEQALRYGLTGRNLRVTGSDYDVRK 244 Query: 406 DHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLP------------ 453 +P++GY +V D SR+ + +E++ +L +I LDNLP Sbjct: 245 YYPYLGYENYDFKVPVYTDGDSWSRVAITFDEMFESLKIIRQALDNLPWDDRYIIDDRKL 304 Query: 454 ----------GGPLMVEGFTY------IPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWR 497 ++ F +P E+PRG+ + ++ K R R Sbjct: 305 VLPPKQEVKHSMEALIHHFKLVHHGFDVPAGEVYVSIESPRGEIGFYVVSDGGNKPMRVR 364 Query: 498 CRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 R ++ +L +L G+ +SD I ++DP + DR Sbjct: 365 VRPPSFYAVYSLPVLLEGHLLSDMVGAIATIDPVFGEVDR 404 >UniRef50_A3ZL03 NADH dehydrogenase (Ubiquinone) n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZL03_9PLAN Length = 418 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 99/386 (25%), Positives = 162/386 (41%), Gaps = 27/386 (6%) Query: 178 KNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLS 237 +V +GP H ++ L DGE + +A + Y+HR EK+ E + + Sbjct: 34 DEMLVNMGPQHPSTHGVLRLVLRTDGEVVSEATPHIGYLHRCAEKIGENLTP-RQWIPYT 92 Query: 238 DRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGF 297 DR+ + G + + +VE + +PE+A+ +R I+ E+ R+ SHL+ +G G Sbjct: 93 DRMDYLAGMNMNLGWALAVEKLIDYDLPEKARHLRVIIAELNRIASHLVGMGTYGLDLGS 152 Query: 298 DSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQ 357 S F+ FR RE + + E GAR TY GG DL + + Q + Sbjct: 153 FSPFLYAFRERERILDLLEDACGARLTYSYLTPGGATADLPPGWLQKLTGFLDQFEPVIL 212 Query: 358 ELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRAD--HPF-VGYGL 414 + +L + +RT IG + E+A D+ GP++R SG D R D + Y Sbjct: 213 DYHALLTNNAIFIKRTANIGVMSAEMAIDYGCSGPVLRGSGVDYDLRRDGEERYTSLYAG 272 Query: 415 LPMEVHSEQG------------------CDVISRLKVRINEVYTALNMIDYGLDNLPGG- 455 EV E+ D R VR+ EV A++++ G++ Sbjct: 273 YAFEVIVEKNGSYPRDHEYPPVPSDAVLGDCWHRFYVRMLEVIQAIDLLRQGIEKYSQAT 332 Query: 456 ---PLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQK-LYRWRCRAATYANWPTLRY 511 ++ T +P A E PRG + ++ + R R R++ + N Sbjct: 333 GDWGTPIKLATKLPKGEAYLETECPRGQMGFYIVSDGSGSIPLRARARSSCFCNLSVAPE 392 Query: 512 MLRGNTVSDAPLIIGSLDPCYSCTDR 537 + R ++D P IIGSLD DR Sbjct: 393 LCRDCLIADVPAIIGSLDIVMGEIDR 418 >UniRef50_B1VSH7 NADH-quinone oxidoreductase subunit D 2 n=6 Tax=Actinomycetales RepID=NUOD2_STRGG Length = 394 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 103/380 (27%), Positives = 178/380 (46%), Gaps = 8/380 (2%) Query: 165 AETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLA 224 ET I + + V+ IGP H ++ R+ +DGE + A+ + Y+HRG EKL Sbjct: 16 TETTIGIGGAAESTDMVLNIGPQHPSTHGVLRLRIVLDGERVQHAEPVIGYMHRGAEKLF 75 Query: 225 ETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSH 284 E R Y ++ L++R + F++ +VE +G++VPERA R +L E+ R+ +H Sbjct: 76 EAR-DYRQIIMLANRHDWLSAFSNELGVVMAVERMLGMEVPERAVWTRTLLAELNRVLNH 134 Query: 285 LLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQ 344 L+ LG G + FR RE + E ++G R Y N +GG++ D+ + Sbjct: 135 LMFLGSYPLELGGITPVFHAFREREELQAVMEEVSGGRMHYMFNRVGGLKEDVPAGWAGR 194 Query: 345 TRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTR 404 R +R + +++L RT +G L + GP+ RASG D R Sbjct: 195 VRDAVASVRSRMDVYENLVLGNEIFRGRTRDVGVLSAAAVHAYGVSGPIARASGVDFDLR 254 Query: 405 ADHPFVGYGLLP--MEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNL---PGGPL-- 457 D P++ YG L ++V + D ++R + + + +L++ D LD + GP+ Sbjct: 255 RDEPYLAYGELRDTLKVVTRTEGDCLARFECLLEQTLNSLDLADACLDRMAHLAPGPINQ 314 Query: 458 MVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNT 517 + P + E P G + ++ ++ + YR + R+A++ N L +L G Sbjct: 315 RLPKVLKAPEGHTYAWTENPLGVNGYYLVSKGEKTPYRLKLRSASFNNIQALTELLPGTL 374 Query: 518 VSDAPLIIGSLDPCYSCTDR 537 V+D I+GSL D+ Sbjct: 375 VADMVAILGSLFFVVGDIDK 394 >UniRef50_A7H9V5 NADH-quinone oxidoreductase subunit D 2 n=8 Tax=Myxococcales RepID=NUOD2_ANADF Length = 431 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 85/387 (21%), Positives = 154/387 (39%), Gaps = 28/387 (7%) Query: 178 KNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLS 237 K V +GP H + +DGE I + ++HRG EK E + + + + Sbjct: 46 KLMTVNLGPSHPAMHGVTRAVVELDGEMIRSMKLDIGFLHRGFEKSCEN-VTWTQCFPYT 104 Query: 238 DRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGF 297 DR+ + ++ + +VE + VPERA+ +R + E+ R+ HL +G G Sbjct: 105 DRLNYVSSIMNNVGFALAVEKLCKLDVPERAKYLRVVTSEIHRICDHLTLVGAMAMELGA 164 Query: 298 DSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQ 357 + F+ R+ L GAR T IGG+ RD + +T + +++ V Sbjct: 165 MTVFLYAIEARDIIYDRLAELCGARLTSNYGRIGGVARDTPDGWIEKTEKTLDRVKGYVD 224 Query: 358 ELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPM 417 E+ ++ RT G G + A + GP +RASG D R P++ Y + Sbjct: 225 EIDQLVSRNRIFIDRTRGTGVVPRADAIELGFTGPCLRASGEPYDLRKAAPYLVYDRIDF 284 Query: 418 EVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTY------------- 464 ++ D R ++R+ E+ + +I + G + V+ F Y Sbjct: 285 DIPVGTNGDNFDRFQMRMEEMRQSDRIIRQCFAQMEPGEIAVQDFRYVLPPKPLVYGTIE 344 Query: 465 --------------IPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLR 510 +P A G+ EA G+ + ++ + Y+ RA + L Sbjct: 345 GLMAHFKIIMEGIQVPAGEAYGYTEAANGELGFYVVSDGGGRPYKLGLRAPGWPMLAALP 404 Query: 511 YMLRGNTVSDAPLIIGSLDPCYSCTDR 537 +M G+ +SD S++ ++ Sbjct: 405 FMSVGSLLSDLIPTFDSINMIGGEVEQ 431 >UniRef50_A6LMC4 NADH-quinone oxidoreductase subunit D n=14 Tax=cellular organisms RepID=NUOD_THEM4 Length = 367 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 93/363 (25%), Positives = 163/363 (44%), Gaps = 8/363 (2%) Query: 182 VPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 241 + GP H ++V+G+ ++ A ++HRG EKL E R+ Y + L R+C Sbjct: 6 LFFGPNHPGMHGNFSVHMYVEGDTVVKARPLPGFLHRGFEKLMERRLWYQNLA-LIPRIC 64 Query: 242 GICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGF 301 + Y +VE I VPERAQ IR I+LE+ R+ +HL + G +G Sbjct: 65 VPEPDINELCYALAVEKIAKIDVPERAQWIRMIVLELARIANHLWSFSGIGGPIGLYTGS 124 Query: 302 MQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVD 361 R+ + + E LTGAR + + GG+R+DL + + + + Sbjct: 125 FWGTADRDRILDIFENLTGARVYHMYIVPGGVRKDLTPKIEKMILETLDYIESRLPDYEK 184 Query: 362 VLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHS 421 ++L + R GI +LD E A + G +RA+G D R P++ Y + EV Sbjct: 185 LILKNRIVHTRLKGIAKLDRETALEMGVTGVGLRATGVPYDIRKVDPYLFYDKVDFEVPF 244 Query: 422 EQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFT------YIPHRFALGFAE 475 D +R+ ++ E++ ++ ++ L+ +P G + +P A E Sbjct: 245 STDGDAFARVYLKFREIFQSIKIVKQALEKMPVGKVNTPISEGSALRFRVPKGQAYVHIE 304 Query: 476 APRGDDIHWSMTGDNQKLYRWRCRAATYAN-WPTLRYMLRGNTVSDAPLIIGSLDPCYSC 534 + RG+ ++ ++ +K YR R A+Y + + L G + D P+ + ++D C Sbjct: 305 STRGEYGYYMVSDGGEKPYRVVVRGASYPQTFIGVEKYLPGTRIEDVPIWLSTMDVCAPE 364 Query: 535 TDR 537 DR Sbjct: 365 VDR 367 >UniRef50_C6X0Z4 NADH-ubiquinone oxidoreductase chain D n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6X0Z4_FLAB3 Length = 420 Score = 387 bits (994), Expect = e-106, Method: Composition-based stats. Identities = 91/388 (23%), Positives = 161/388 (41%), Gaps = 28/388 (7%) Query: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235 D + + +GP H + L +DGE I+ ++ + Y+HR EK++E R + ++T Sbjct: 33 DGQLYTLNLGPTHPATHGIFQNVLTMDGERILHSEQTIGYIHRAYEKISERRN-FTQITT 91 Query: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 295 L+DR+ ++ + +VE +G +VP+R +R I++E+ R+ H++ G+ Sbjct: 92 LTDRMNYCSAPINNIGWHLTVEKLIGCEVPKRVDYMRVIMMELARIADHMVCNGVIAMDA 151 Query: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 355 G +G F+ RE +M E + GAR T + IGG RD + ++ + Sbjct: 152 GAITGLTYLFQEREKIYEMYEQVCGARMTTNMGRIGGFERDFNDKFHELLQTWLKRFPKI 211 Query: 356 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415 E + RT+ +G + E A + GP +RA+G D R P+ Y Sbjct: 212 WSEFCALNERNRIFMDRTINVGPISAERALSYGFTGPNLRAAGVDYDVRVASPYSSYNDF 271 Query: 416 PMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVE--------------- 460 + D R VR EV+ +L +I+ NLP GP + Sbjct: 272 DFIIPVGSAGDTYDRFMVRQQEVWESLKIINQAYKNLPDGPFHADVPEFYLPEKADVYNN 331 Query: 461 ------------GFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPT 508 G T +P E G+ + ++ + YR R + + Sbjct: 332 MEALIYHFKIVMGETDVPIGEVYNCVEGGNGELGFYLVSDGGRTPYRLHFRRPCFIYYQA 391 Query: 509 LRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 M++G +SDA + + S++ D Sbjct: 392 YPEMIKGGMISDAVVTMCSMNVIAGELD 419 >UniRef50_B9L8U2 Ech Hydrogenase, Subunit n=3 Tax=Epsilonproteobacteria RepID=B9L8U2_NAUPA Length = 361 Score = 386 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 121/357 (33%), Positives = 187/357 (52%), Gaps = 1/357 (0%) Query: 181 VVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 240 +VP G HV EP F E I D + YVHRG+EK A TR Y ++ +L RV Sbjct: 6 IVPFGSQHVALPEPVSFLFETQNEVITDVTVNIGYVHRGIEKAAITRFEYTQLPYLVARV 65 Query: 241 CGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG 300 CG+C H+ AYT +E +GI+ ++ +R +++E++R+HSH+L G G+++ Sbjct: 66 CGLCSITHAGAYTHGIEKLLGIETNKKIDYLRMLVVELDRIHSHMLANGHVAEVVGYENL 125 Query: 301 FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELV 360 FMQ FR RE M + E +TG R Y +IGG+ RD K+ R+ ++ ++L+ Sbjct: 126 FMQTFRYREDVMDILERITGNRVQYDYQIIGGVARDFDKETEDFAREKLLTLKANTEKLI 185 Query: 361 DVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVH 420 + + +T G+G + E+A F+ GP+ RASG D RA++ ++ + + ++ Sbjct: 186 EFFENDYTFALKTKGVGTISKEMAEKFNAAGPIARASGLETDARAEYDYLPFEEVGYKLQ 245 Query: 421 SEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGD 480 + DV +R VR +E+ ++ M LD +P G V+ P EAPRG+ Sbjct: 246 TRTEGDVWARNMVRFDEIMNSIEMCLNILDGIPEGEHRVKVKGR-PDGETFVRVEAPRGE 304 Query: 481 DIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 ++ + L R R R TYAN P L+ + G SDA I+ S DPC SCT R Sbjct: 305 CFYYLKGNKTKVLERVRIRVPTYANIPVLKELFVGEKYSDAQAIVLSFDPCMSCTAR 361 >UniRef50_A1ALP2 NADH-quinone oxidoreductase subunit D n=1 Tax=Pelobacter propionicus DSM 2379 RepID=NUOD_PELPD Length = 403 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 92/394 (23%), Positives = 170/394 (43%), Gaps = 28/394 (7%) Query: 171 INELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGY 230 + + D + +V +GP H + +DGE + AD Y+HRG EK +E Y Sbjct: 11 LEQTADPNHVLVNMGPSHPATHGTIQIIAALDGERVAKADIHCGYLHRGFEKESEHHT-Y 69 Query: 231 NEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGL 290 +++ +DR+ ++ AY VE +GI++ R +R +L E R+ H+ + Sbjct: 70 HKIIPFTDRLNYCSALNNNFAYVEGVEKLLGIELTPRCIYLRTLLAEYNRVADHVTCVAA 129 Query: 291 ACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQ 350 G + F+ +R+ + LTGAR TY +GG++ DL + + ++ Q Sbjct: 130 TVMEMGAMTAFLYLMTIRDYIFEHLNQLTGARLTYSFARVGGLKNDLPDGWLERLEEILQ 189 Query: 351 QMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFV 410 + + +L RT +G + PE A ++ GP++R++G D R D+P++ Sbjct: 190 FTEKYCGRIHGLLDRNRIFIDRTRDVGAMSPEHALNWGYTGPILRSTGAKIDIRKDNPYL 249 Query: 411 GYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTY------ 464 Y L EV D R VR+ E+ +++M+ + LP GP+ ++ Sbjct: 250 AYADLDFEVPVGIKGDNYDRYYVRMREIDESISMVRQCMKKLPDGPVNIDDRRIMYPTKD 309 Query: 465 ---------------------IPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATY 503 +P EAP G+ + ++ + + Y+ R+ ++ Sbjct: 310 KVYTKIEYLISHFKLVIDGIQVPAGEIYVSHEAPNGELGFYLISDGSGRPYKLHVRSPSF 369 Query: 504 ANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 A+ + +L G V+D GS++ DR Sbjct: 370 AHMGGMHTLLEGYQVADVIATFGSMNMIGGECDR 403 >UniRef50_A1RZ50 NADH dehydrogenase (Ubiquinone) n=6 Tax=Archaea RepID=A1RZ50_THEPD Length = 404 Score = 385 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 115/391 (29%), Positives = 182/391 (46%), Gaps = 28/391 (7%) Query: 173 ELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNE 232 GD+ + IGP H +S F + + G+ I+ D + YVHR MEKLAE R Sbjct: 16 REGDESVYELFIGPQHPSS-GHMRFIVRLQGDVIVSVDPDIGYVHRTMEKLAEGREAIKA 74 Query: 233 VTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLAC 292 + L +R+ I + T++E + ++ P RA +R +L E+ R+ SHL +G+A Sbjct: 75 IPLL-ERLTIIDSHNATVGLVTAMERLLDVEPPPRALYLRTLLSEINRIASHLYGMGIAG 133 Query: 293 HFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQM 352 + FM F RE +++AE LTGAR T+ ++ GG+RRDL + + + A+ M Sbjct: 134 IMLNHSTMFMWAFGDREVWLQLAEELTGARLTHTYSVPGGVRRDLPQGFGEKFEKAARYM 193 Query: 353 RREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGY 412 R +Q+ + + L P + R G+G L A VGP +RASG D R + Y Sbjct: 194 ERRLQDYMRIFLENPQVVARYEGVGVLKKSEASRLGVVGPNLRASGVKYDARLADDYGAY 253 Query: 413 GLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGF---------- 462 L EV + + D ++R+ VR+ E+ ++++I L +P GP++ E + Sbjct: 254 KDLEFEVPTREEGDCMARMLVRVEEIKQSISIIRQVLRKMPDGPILSEKYLKLLPPKTRE 313 Query: 463 ----------------TYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANW 506 +P A+ AE G+ + + K YR R ++ N Sbjct: 314 RVLQEGRVKFPALFASLKLPAGEAVARAEMGHGEIFYHITGDGSAKPYRLRVVTPSFRNV 373 Query: 507 PTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 RY+ G+ D P I GSLD DR Sbjct: 374 ILFRYLAPGHRFMDFPAIYGSLDYFPPEADR 404 >UniRef50_C7DI97 NADH dehydrogenase (Quinone) n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DI97_9EURY Length = 387 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 106/374 (28%), Positives = 183/374 (48%), Gaps = 10/374 (2%) Query: 171 INELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGY 230 + + + +GP+H ++ + VDG+ I + + ++HRG+EKL E RM Y Sbjct: 17 TQKSENMPVMRINVGPIHPSTHGVLRLLVDVDGDTIENMTCHIGFLHRGVEKLMENRM-Y 75 Query: 231 NEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGL 290 + ++++ + Y +VE A+ +V E A+ R I++E +R+ SHL +G Sbjct: 76 MQSPSYTEKLDYVAPLGWDDLYVHTVELALQKEVKETAKYARVIIMEFQRIASHLFFIGA 135 Query: 291 ACHFTG-FDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLA 349 C+ G + FM FR R+ +K E ++G+R Y +GG+ R L D + +L Sbjct: 136 LCNDIGQMFTMFMWAFRERDAVLKFLEDISGSRMFYVNMRVGGLMRPLPDDFYDRAYKLT 195 Query: 350 QQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPF 409 + + +V+ DV+ +RT GIG + + A DF GP +RASG D R ++P+ Sbjct: 196 EYIEYKVKGYKDVIDDNSIFMERTKGIGTISKKEAIDFGLSGPNLRASGVEYDVRKEYPY 255 Query: 410 VGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLP------GGPLMVEGFT 463 Y L +V + D +R K+R E++ ++ +I LD +P G P+ + G Sbjct: 256 YAYDRLKFKVPTSNAGDGYARYKMRYEEIFESIKIIRQALDKMPRDNDVVGLPIKLIGPE 315 Query: 464 YIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPL 523 P + E PRG+ I + + QK YR R R+ + + L ++ +G +D Sbjct: 316 AKPD-IVINHHELPRGEGIIYMVPDK-QKPYRIRLRSPVFISLSALEHICKGAKFADLFS 373 Query: 524 IIGSLDPCYSCTDR 537 I G+LD + DR Sbjct: 374 IAGTLDVVMAEVDR 387 >UniRef50_A7C1S4 NADH-ubiquinone oxidoreductase subunit n=3 Tax=cellular organisms RepID=A7C1S4_9GAMM Length = 380 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 101/380 (26%), Positives = 170/380 (44%), Gaps = 9/380 (2%) Query: 165 AETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLA 224 E Y+ + + + GP H + ++ + G+ ++ Y+HRG EK+ Sbjct: 3 PENYQPVEHPASHEYE-LYFGPNHPGIEGNYALKVRLSGDEVVGVKADAGYLHRGFEKIM 61 Query: 225 ETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSH 284 E R+ V L R+C Y +VE G++VPERAQ IR ++LE+ R+ +H Sbjct: 62 EERLWIQNVA-LVPRICVPDPPPMEETYARAVEMLGGLEVPERAQWIRVMMLEMSRIAAH 120 Query: 285 LLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQ 344 L G TG S R+ + + E LTGAR GG+RRD+ + + Sbjct: 121 LFIAGGTSATTGQYSNMFWGIADRDLILDLFEELTGARIYNMFITPGGVRRDIPDGFLDR 180 Query: 345 TRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTR 404 Q+ + + E D+ P +R GIG++ E A + GP +RA G D R Sbjct: 181 LGQVLDFLEARLPEYDDLFFDNPVFHRRAEGIGKMTQEQALAWGVTGPNLRACGLPFDVR 240 Query: 405 ADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLP--GGPLMVEGF 462 + P++ Y L ++ +E G DV+ R++VR +E+ + ++ + LP GP+ Sbjct: 241 RNDPYLVYEQLDFDIPTETGGDVLDRIRVRRSEIIESTKILRQVIQRLPHVKGPIRCHLP 300 Query: 463 TY----IPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYAN-WPTLRYMLRGNT 517 +P A EA +G+ ++++ K +R R + + L + G Sbjct: 301 NPLAWNVPEGDAYARTEAQKGELGFYAVSTGGTKPWRVHVRGPSCMHAVQVLEKLCLGAR 360 Query: 518 VSDAPLIIGSLDPCYSCTDR 537 + D +I+ SLD C DR Sbjct: 361 IEDIAMIMFSLDACPPEVDR 380 >UniRef50_A6DAC0 Carbon monoxide-induced hydrogenase, large subunit n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DAC0_9PROT Length = 358 Score = 381 bits (978), Expect = e-104, Method: Composition-based stats. Identities = 117/357 (32%), Positives = 183/357 (51%), Gaps = 3/357 (0%) Query: 182 VPIGPLHVTSDEPGHFRLFVDG-ENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 240 + IGP + +EP +F+L VD E + D + +VHRG+E L + + + L++R+ Sbjct: 4 INIGPFLASLEEPIYFKLDVDDNEIVRDVEIVNGFVHRGLEALTMQKNFFQNLI-LTERL 62 Query: 241 CGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG 300 C +C H +Y ++E I+V +RA +R I EV+R+ S++ NL + H Sbjct: 63 CALCSNNHPFSYCLALEKIAEIEVSKRADYLRVIADEVKRIASNMFNLSMLAHLVHDYEL 122 Query: 301 FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELV 360 RE + E + G R IGG++ +L K +++ V +L Sbjct: 123 MRDTMDTREIMQDVKETIWGNRMDLSAVTIGGVKYNLDKQKSEFILNSLEKIEPLVDKLF 182 Query: 361 DVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVH 420 + ++ +++ T GIG L + A +F GP+ R SG D R P+ Y L + V Sbjct: 183 ERFCNSEKIKK-TKGIGVLTKQQALEFGVSGPVARGSGINNDVRVKAPYAAYDELEVRVD 241 Query: 421 SEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGD 480 E DV SR+KVR ++ A+ ++ ++NLP GP+ +E +IP A EAPRG+ Sbjct: 242 LESDGDVYSRMKVRWYDIKNAIKILKNAINNLPSGPIHLEKRPHIPAGEATVRTEAPRGE 301 Query: 481 DIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 I++ T QK R R R TY N+ L M++GN SD LI+ S+DPC SCTDR Sbjct: 302 LIYYVKTDGGQKPKRMRWRVPTYMNFQALEEMIKGNRASDVVLILNSIDPCVSCTDR 358 >UniRef50_B3ES55 NADH-quinone oxidoreductase subunit D n=19 Tax=Bacteroidetes/Chlorobi group RepID=NUOD_AMOA5 Length = 403 Score = 380 bits (977), Expect = e-104, Method: Composition-based stats. Identities = 93/377 (24%), Positives = 166/377 (44%), Gaps = 18/377 (4%) Query: 178 KNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLS 237 + ++ IGP H + + +DGE ++D L Y+HR EK A T + YN+ Sbjct: 28 EEVLINIGPQHPATHGILRLEVILDGEIVVDVVPHLGYLHRCFEKHAAT-LPYNQTIPFV 86 Query: 238 DRVCGICGFAHSTAYTTSVENAMGI--QVPERAQMIRAILLEVERLHSHLLNLGLACHFT 295 DR+ + A+ VE+ +G+ ++P R + IR ++ E+ RL SH + +G Sbjct: 87 DRLDYLAAMNSEHAFAMGVEHMLGLTGKLPRRVEYIRVLMAELNRLASHFMAIGTYGIDL 146 Query: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 355 G + F+ R RE +++ E +GAR Y IGG+ DL + + ++ + Sbjct: 147 GAFTSFLWLMRDREYILRLFEWASGARMLYNYIWIGGLYYDLPVGFEERCLEFITYLKPK 206 Query: 356 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415 ++E+ +L+ +RT +G L A + GP++RASG D R + Y L Sbjct: 207 LEEINQLLIDNTLFIKRTANVGVLPLATAINHGVSGPILRASGLRLDLRRIDGYSIYPEL 266 Query: 416 PMEVHSEQG-----CDVISRLKVRINEVYTALNMIDYGLDNLPGG---------PLMVEG 461 ++ +G D R V+ E ++ + + L L MV Sbjct: 267 SFDIPIGEGLMGHVGDCWDRTWVKFQECKESIKITEQCLVRLTSDLKRTADFNPQKMVPK 326 Query: 462 FTYIPHRFALGFAEAPRGDDIHWSM-TGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSD 520 + AE PRG+ + + + K R + R+++++N + + +G ++D Sbjct: 327 KVRTKAQDCYIRAENPRGELGFFFRASDNGDKPIRCKARSSSFSNLSVISSIAKGQVLAD 386 Query: 521 APLIIGSLDPCYSCTDR 537 IIGS+D DR Sbjct: 387 LIAIIGSIDIVLGEIDR 403 >UniRef50_B8IYV5 NAD-dependent dehydrogenase subunit n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8IYV5_DESDA Length = 565 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 126/479 (26%), Positives = 188/479 (39%), Gaps = 45/479 (9%) Query: 101 YPSVTPRVPAAVWGEREVRDMYGLIPVGLPDE---RRLVLPDDWPDELYPLRKDSMDYRQ 157 + S+TP +P + ERE+ + +G+ PVG P RR+ + + S Sbjct: 88 FVSMTPELPQLHYFEREIYEQWGVEPVGHPWLKSVRRIPDSAEAAARNAAESQTSSAAPA 147 Query: 158 RPAPT------------TDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGEN 205 + + Y F G + V +GP+H EPGHFR GEN Sbjct: 148 QESAEVVPSPALTASARPQTLPYPFYRVEGADVHEVA-VGPVHAGIIEPGHFRFQCYGEN 206 Query: 206 IIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVP 265 ++ + L Y HRG+E + T+ L + G AH+TA+ +E G Q Sbjct: 207 VLHLEIALGYQHRGLEAMI-TQGPAGRRLHLLECAAGDSTVAHATAHCVLLERMTGQQPD 265 Query: 266 ERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTY 325 ERAQ++R I LE+ERL +H +LG TGF R+R + + L G R Sbjct: 266 ERAQLLRRIGLELERLANHTGDLGAIAGDTGFLPTASWNGRIRGDFLNITASLCGNRFGR 325 Query: 326 GLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIAR 385 GL GG+ DL + + + + VDV+L + R G ++P AR Sbjct: 326 GLLRPGGVAYDLAPSECADMLARVRAAWHDARGSVDVMLDAVTVRNRLADTGMVEPATAR 385 Query: 386 DFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMI 445 + VG RA G D R P E DV++R VR E+ +L ++ Sbjct: 386 ELGLVGVAARACGLDVDARFHMPLSDLPCEGCAPRLEITGDVMARTLVRSRELDDSLRLL 445 Query: 446 DYGLDNLPGGPLMVEGFT----------------------------YIPHRFALGFAEAP 477 ++ L L P T P A+ E Sbjct: 446 EFDLARLGALPHTKNAATAESTVSAPATAAATNTSGTAAEAASFDALPPDTLAVALVEGW 505 Query: 478 RGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 RG+ H +T +L ++ ++ NW L LRGN +SD PL S + Y D Sbjct: 506 RGEVCHVGLTDSRGRLLVYKVVDPSFHNWAGLAMALRGNQISDFPLCNKSFNLSYCGHD 564 >UniRef50_B3T914 Putative Respiratory-chain NADH dehydrogenase, 49 Kd subunit n=2 Tax=environmental samples RepID=B3T914_9ARCH Length = 384 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 95/367 (25%), Positives = 156/367 (42%), Gaps = 9/367 (2%) Query: 176 DKKNNVVPIGPLHVTSDEPGHFRLF--VDGENIIDADYRLFYVHRGMEKLAETRMGYNEV 233 D + + +GP H S GH R+ VDG+ I+ D YVHRG EK+AE R + Sbjct: 22 DDRIMTLNVGPQHPGS---GHMRIILKVDGDYIVHCDPDPGYVHRGEEKMAEYRNYITNI 78 Query: 234 TFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACH 293 L +R Y VE +G++VPERA+ IR I E+ R L + Sbjct: 79 PHL-ERPVIHDSCNILYPYCLGVEELLGLEVPERAKYIRVIAAELNRCVYTQYWLAIYGI 137 Query: 294 FTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMR 353 F G + FM RE + + + +TGAR T+ + GG+R D+ + + Sbjct: 138 FLGHSTMFMWPMGDRELVIDLLDKMTGARVTHSYFVPGGVRNDIPPNFEDVCLRQVNYFE 197 Query: 354 REVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYG 413 + ++E D+ P + RT G L E A G ++RASG D R P+ Y Sbjct: 198 KRLKEYADMFYDNPILISRTKDTGILSREDAIKLGTTGSVLRASGVDFDIRKKEPYDVYE 257 Query: 414 LLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPG-GPLMVEGFTYIPHR--FA 470 L + + + D +R K+ +++ + +I L +P G + V+ Sbjct: 258 ELDFQTNVLKEGDSYARSKIPWLDMFESCRIIRDALKKMPKSGSVRVKLKPNPKGGDTEV 317 Query: 471 LGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDP 530 E+ RG ++ + YR + ++ N + ++L G + + P + SL+ Sbjct: 318 YRRVESGRGSLGMHIISRGKPQPYRLKISVGSFRNLIAMPHLLTGEMLGNMPAVYWSLNY 377 Query: 531 CYSCTDR 537 DR Sbjct: 378 WPVEADR 384 >UniRef50_C2BU22 NADH dehydrogenase (Quinone) n=4 Tax=cellular organisms RepID=C2BU22_9ACTO Length = 457 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 107/404 (26%), Positives = 169/404 (41%), Gaps = 49/404 (12%) Query: 182 VPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 241 V +GP+H ++ + ++GE + D Y+H G+EK E R YN+ R+ Sbjct: 55 VNLGPVHPSTHGVLRVIVELEGETVKDCRLGTGYLHTGIEKSMEYRT-YNQGVAYCSRMD 113 Query: 242 GICGFAHSTAYTTSVENAMGI--QVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDS 299 + F A+ +VE A+G+ QVP RA IR +L+E+ R+ SHL+ +G + G + Sbjct: 114 YVAPFFSEVAWCLAVEKALGVTDQVPRRASEIRVLLMELNRIASHLVAVGTGANELGATT 173 Query: 300 GFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQEL 359 FR RE +++ E +TG R GG+ DLL D + R+ ++R++ E+ Sbjct: 174 MLTTGFRGREEILRIFEHITGLRMNNTYMRPGGVSNDLLDDTIDMIREKLPLVKRDIGEM 233 Query: 360 VDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEV 419 D++++ P R +G L S GP +RA G D R P+ GY +V Sbjct: 234 QDLIMANPIFIGRMKNVGWLPLSTMMALSLTGPCLRAGGLPLDMRKLQPYCGYEAYTFDV 293 Query: 420 HSEQGCDVISRLKVRINEVYTALNMIDYGLDNL---PGGPLMVEGFT------------- 463 + D +R +VR E+Y +L ++ LD L G P+M+ Sbjct: 294 PTRDHSDCYTRTEVRFEEMYQSLRIVYQVLDRLEQSEGEPVMIADPKFAYPSKLTIGADG 353 Query: 464 ------------------------------YIPHRFALGFAEAPRGDDIHWSMTGDNQKL 493 IP E +G +T Sbjct: 354 QGQDPEHVSHILGHSMEELIHHFKLVTEGFRIPPGQVYAQVEHAKGIQGVHLVTDGGTHP 413 Query: 494 YRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 YR R +YAN + M G +SD + IGS+DP + DR Sbjct: 414 YRAHFRDPSYANLQSASMMCEGGLISDLVVSIGSIDPVFGGVDR 457 >UniRef50_B3TC54 Putative Respiratory-chain NADH dehydrogenase, 49 Kd subunit n=1 Tax=uncultured marine microorganism HF4000_APKG10H11 RepID=B3TC54_9ZZZZ Length = 363 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 100/365 (27%), Positives = 170/365 (46%), Gaps = 8/365 (2%) Query: 177 KKNNVVPIGPLHVTSDEPGHFRL--FVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVT 234 + + GP H + GHFR+ +DG+ + A+ + Y HRG+EKL E R + Sbjct: 3 EGLVTLNWGPQHPVT---GHFRMIMTIDGDLCVGAEPTIGYTHRGIEKLLENRQFLVGIP 59 Query: 235 FLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHF 294 + +R S +YT +VE+ M + P RAQ +R I+ E+ RL SHL NL L Sbjct: 60 MI-ERFNMTDTAPMSLSYTKAVESLMDFEAPPRAQYLRTIISEICRLSSHLYNLALYTVA 118 Query: 295 TGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRR 354 G + FM RE +K+ EIL+G R Y + GG+ +D+ D Q + + R Sbjct: 119 LGMYTPFMWAIGDREHFLKLGEILSGVRLAYNYPIPGGVYKDMPPDFPHQATKTIKYFRN 178 Query: 355 EV-QELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYG 413 + ++ + T ++ R +G + E A + GP++RASG +D R P+ Y Sbjct: 179 RLLKDYKKFIYDTTAVKSRGEDVGIMSKEEALKWGVTGPVLRASGVKKDMRKVEPYGAYN 238 Query: 414 LLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGF 473 + +V ++ D +R+ VR E+ +LN+++ + ++P G + +P Sbjct: 239 EVDFDVITKNEGDSHARMLVRYEEMEQSLNILEQCIKDIPAGDYFTKVRPAVPAGETFTR 298 Query: 474 AEAPRGDDIHWSMTGDN-QKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCY 532 EA RG+ + + YR + ++ N L + G+ ++D I S+D Sbjct: 299 VEAARGEVGVYLFNKETRNMPYRTKFSNPSFKNGYVLPKLFVGSVIADCAAIYHSIDVWA 358 Query: 533 SCTDR 537 DR Sbjct: 359 LEMDR 363 >UniRef50_A4XCQ7 NADH-quinone oxidoreductase subunit D 2 n=22 Tax=Actinomycetales RepID=NUOD2_SALTO Length = 388 Score = 374 bits (960), Expect = e-102, Method: Composition-based stats. Identities = 108/365 (29%), Positives = 181/365 (49%), Gaps = 5/365 (1%) Query: 177 KKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFL 236 + V+ IGP H ++ RL +DGE ++ A+ + Y+HRG EKL E R Y ++ L Sbjct: 25 GTDMVLNIGPQHPSTHGVLRLRLVLDGERVVSAEPVVGYMHRGAEKLFEVR-DYRQIIVL 83 Query: 237 SDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTG 296 ++R + FA+ +VE +G++VPERA +R L E+ R+ +HL+ LG G Sbjct: 84 ANRHDWLSAFANELGVVLAVERLLGMEVPERATWLRMALAELNRVLNHLMFLGSYPLEIG 143 Query: 297 FDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREV 356 + FR RET E ++G R Y N +GG++ ++ + R ++RR + Sbjct: 144 AITPMFYAFRERETLQTALEEVSGGRIHYMFNRVGGLKEEVPAGWTGRARAAIGEVRRSL 203 Query: 357 QELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLP 416 +L +++ RTVG+G L A + GP+ RASG D R D P++ Y L Sbjct: 204 PDLDNLIRRNEIFLARTVGVGVLSAAQAAAYGASGPVARASGLDLDLRRDEPYLAYDQLD 263 Query: 417 MEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLP--GGPL--MVEGFTYIPHRFALG 472 + V + D SR +V +++VY +L++ + LD + GP+ + P Sbjct: 264 VPVVTRTAGDCHSRFEVLLDQVYVSLDLAEQCLDRVDRLTGPINTRLPKVLKAPEGHTYA 323 Query: 473 FAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCY 532 + E P G + ++ ++ + +R + R A+YAN L +L G V D I+GS+ Sbjct: 324 WTENPLGINGYYLVSRGEKTPWRLKLRTASYANVQALATLLPGCLVPDLVAILGSMFFVV 383 Query: 533 SCTDR 537 D+ Sbjct: 384 GDIDK 388 >UniRef50_A9A347 NADH dehydrogenase (Quinone) n=3 Tax=Thaumarchaeota RepID=A9A347_NITMS Length = 378 Score = 373 bits (959), Expect = e-102, Method: Composition-based stats. Identities = 99/382 (25%), Positives = 158/382 (41%), Gaps = 10/382 (2%) Query: 162 TTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFV--DGENIIDADYRLFYVHRG 219 TD + D++ + +GP H S GH R+ V DG+ I+ D YVHRG Sbjct: 1 MTDIMPPGLALKKVDERIMTLNVGPQHPGS---GHMRIVVQIDGDYIVACDPDPGYVHRG 57 Query: 220 MEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVE 279 EK+AE R V L +R Y E +GI+VPERA+ +R I E+ Sbjct: 58 EEKMAEYRNYITNVPHL-ERPVIHDSCNVLYPYVLGAEEILGIEVPERAKYVRVICSELN 116 Query: 280 RLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLK 339 R + L + F G + FM RE + + E ++GAR T+ + GG+R DL Sbjct: 117 RCIYTMYWLAIYGIFLGHSTMFMWPAGDRELLIDLMEKVSGARVTHAHFIPGGVRNDLPA 176 Query: 340 DDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGH 399 + + + ++E V P + RT G L E A + G ++RASG Sbjct: 177 NFEDVCLRQVNYFEKRIKEYAAVFYDNPILISRTQDTGVLSRENAIRYGTTGSVLRASGV 236 Query: 400 ARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMV 459 D R P+ Y L + + + D +R KV ++ + N+I L +P + Sbjct: 237 DYDLRVKAPYDVYDELDVHTNVLKEGDSYARSKVPWLDMMESCNIIRQALQKMPKSGSVR 296 Query: 460 EGFTYIPHRFA----LGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRG 515 P E+ RG + ++ + YR + ++ N + +L G Sbjct: 297 TKLKPNPKTKGPATVYKRVESGRGSLGCYIVSDGKTEPYRVKMSVPSFRNLLAMPNLLIG 356 Query: 516 NTVSDAPLIIGSLDPCYSCTDR 537 + + P + SL+ DR Sbjct: 357 EKLGNMPSVYWSLNYWPVEADR 378 >UniRef50_C1AB36 NADH-quinone oxidoreductase chain D n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AB36_GEMAT Length = 412 Score = 371 bits (952), Expect = e-101, Method: Composition-based stats. Identities = 90/388 (23%), Positives = 157/388 (40%), Gaps = 28/388 (7%) Query: 177 KKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFL 236 VV IGP H + +DGE ++ D Y+HRG EK E ++ + Sbjct: 26 DDTVVVNIGPSHPATHGTVQIIAELDGEKVLRTDVHCGYLHRGFEKECEDHT-WHNLIPY 84 Query: 237 SDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTG 296 DR+ ++ AY VE MGI++ R + +R +L E RL HL + + G Sbjct: 85 VDRLNYCSALINNFAYCDGVEQLMGIEITPRTKYLRTLLSEYSRLADHLTCVAASLMELG 144 Query: 297 FDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREV 356 + F+ VR++ + LTGAR TY IGG+ D+ + ++ + + Sbjct: 145 AMTAFLYLVTVRDSMYEHLAALTGARVTYSYGRIGGLAADVPDGWFKRLGEILRDYEQYA 204 Query: 357 QELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLP 416 + + ++ R +G ++ A + GP++R++G RD R D P++ Y L Sbjct: 205 ERVHGLVDRNRIFIDRLRNVGTINTADALHWGFTGPVLRSTGAKRDLRKDTPYLAYAELD 264 Query: 417 MEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGF-------------- 462 +V D R VR+ E+ ++ MI +D +P GP+ V+ Sbjct: 265 FDVPVGIFGDNYDRYYVRMREMDESVYMIRQLMDMIPDGPINVDDRRCVFPEKQLVYSEI 324 Query: 463 -------------TYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTL 509 +P A E G+ + ++ Y+ R+ ++ + Sbjct: 325 ESLINHFKLVMEGPAVPAGDAYVAHEGANGELGFYIVSTGEGVPYKVHVRSPSFVHMGGA 384 Query: 510 RYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 ML G ++D GS++ DR Sbjct: 385 HRMLDGYQLADIVTSFGSINMIGGECDR 412 >UniRef50_Q58433 Uncharacterized protein MJ1027 n=12 Tax=Methanococcales RepID=Y1027_METJA Length = 377 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 121/368 (32%), Positives = 188/368 (51%), Gaps = 5/368 (1%) Query: 182 VPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 241 + IGP+H T EP RLF++ E I +A+ + +RG+E + E + +++ LS+++C Sbjct: 10 IAIGPVHPTMLEPHRLRLFIEDEIIKEAELVIGVNYRGIELIMEG-LPPEKISILSEKIC 68 Query: 242 GICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGF 301 GIC H T E I+VPERA+ IRAI+ E+ERLHSH+L G A GF++ Sbjct: 69 GICSHIHVWCNVTVTERGCDIEVPERAEYIRAIVEELERLHSHMLLFGHAFEVLGFETMA 128 Query: 302 MQFFRVRETSMKMAEILTGARKTYGLNLIGGI--RRDLLKDDMIQTRQLAQQMRREVQEL 359 + F +RE M++ +TG R Y +IGGI R ++ + + + ++ +++L Sbjct: 129 FRAFMIREPIMQILGEITGGRAQYSCPIIGGIRPRCNIKESKIPALLERLEKFEENLKKL 188 Query: 360 VDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEV 419 ++ ++ P + R +G LD + A+ +GP R SG D R Y E Sbjct: 189 LERTVNDPMIMSRIKDVGVLDKKTAKKLHALGPTARGSGIHSDMRKMGQVPVYDNFEFEE 248 Query: 420 HSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFAL--GFAEAP 477 DV SRL VR E + ++ +I GL +LP + Y F + EA Sbjct: 249 IVFDDGDVFSRLAVRFYECFESVKIIRQGLKDLPNLDKRIYNPNYELKEFKPIDVYNEAQ 308 Query: 478 RGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 RG + +N ++ + + R T N + +L G+ VSDA LII S DPC++CTDR Sbjct: 309 RGQVYYSYGLDENGRVRQVKIRTPTATNLACMEAILPGHHVSDAELIIASCDPCFTCTDR 368 Query: 538 MTVVDVRK 545 M VV K Sbjct: 369 MIVVKENK 376 >UniRef50_A9FF67 NAD-dependent dehydrogenase subunit n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FF67_SORC5 Length = 495 Score = 366 bits (940), Expect = 1e-99, Method: Composition-based stats. Identities = 116/494 (23%), Positives = 198/494 (40%), Gaps = 31/494 (6%) Query: 44 EVVEFLYYKQGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPS 103 E+++ L + L+G R+ AV VL + V + Y Sbjct: 31 ELLKQLRADM--RVVTLYG---RRDVDRVAVTAVLQASDRSLHVSRTEVSAERG---YHE 82 Query: 104 VTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTT 163 +T A ERE+ + G G P + + R + Sbjct: 83 MTTEHAALHCFERELHEQTGARIAGHPWLKPI--------------------RYEGQEQS 122 Query: 164 DAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKL 223 ++ F G + + V +GP+H EPG FR GE + + L Y HRG+E+ Sbjct: 123 AMSSHPFYKIEGKEVHEVA-VGPIHAGVIEPGSFRFMCLGEQVHHLEIHLGYQHRGVERR 181 Query: 224 AETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHS 283 R +T L + + G AH+ A+ +++E+ G ++ ++ RA+ LE+ER+ Sbjct: 182 LLERDP-RSLTPLIETIAGDTSVAHAWAHCSALESLAGCRLDIEIELARAVALELERVAM 240 Query: 284 HLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMI 343 HL L GF G + R+R T++ L G+R G GG+R L + + Sbjct: 241 HLSTLAGMAADVGFLQGATTYGRLRTTAINTMMRLCGSRFGKGALRPGGVRMRLPPEALP 300 Query: 344 QTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDT 403 R ++ ++ + D L ++ R G L AR+ VG RASG D Sbjct: 301 DIRANLDLLQADLPIINDCFLMARTVQHRLRSTGTLTTAQARELGLVGLAARASGIELDA 360 Query: 404 RADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGF- 462 R Y ++P++ D +R ++RI E+ +L+ + + Sbjct: 361 RHLVEHGAYSVVPIQPVVLPDGDCWARARIRIAEIEASLSWVSAVIALYANWERPRPSIG 420 Query: 463 TYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAP 522 P + A+ E RG+ +H TG + ++ ++ + + NW L +RGN +SD P Sbjct: 421 ELAPDQLAISLVEGFRGEVVHCVETGAHGEVVHYKVQDPSLRNWMGLALAVRGNEISDFP 480 Query: 523 LIIGSLDPCYSCTD 536 + S D Y D Sbjct: 481 ICNKSFDLSYCGND 494 >UniRef50_A6UVJ6 Hydrogenase, component E-formate hydrogenlyase subunit 5-like protein n=1 Tax=Methanococcus aeolicus Nankai-3 RepID=A6UVJ6_META3 Length = 518 Score = 364 bits (935), Expect = 5e-99, Method: Composition-based stats. Identities = 108/504 (21%), Positives = 203/504 (40%), Gaps = 28/504 (5%) Query: 47 EFLYYKQGGWLSVLFGND---ERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPS 103 + L + + G++ F K N + Y + S+ + + V + S Sbjct: 28 KILKFTETGYVVQHFAIPSYNINKNNSNENKYKIYSVLRNDTELYVLSTMV---GTSFES 84 Query: 104 VTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTT 163 ++ ERE+ + YG++P P + + ++ K + D Sbjct: 85 LSQYNIKFQMFEREIAEQYGIVPKNHPWLKSVRYHKNY--------KGAPDVFGNNYTAP 136 Query: 164 DAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKL 223 Y F G++ + V +GP+H EPGHFR GE I+ + + Y HRG+EK Sbjct: 137 IPGNYPFYEVGGEEIHQVA-VGPVHAGIIEPGHFRFNCIGETILSLEIQHGYQHRGIEKQ 195 Query: 224 AETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENA--MGIQVPERAQMIRAILLEVERL 281 + + + + G +S ++ ++E + E R +LLE+ER+ Sbjct: 196 ILN-CKKEVLPLIIESIAGDTVIGNSICFSEAIEWLSNCNYEANEPLYNYRRLLLEIERI 254 Query: 282 HSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDD 341 +H+ +G G+ + R+R + M ++ G R G L D Sbjct: 255 ANHIGTMGGLAGDVGYIPTASYYGRIRGDFLNMFVLICGNRFGRSSVRPFGAPFKLSDDH 314 Query: 342 MIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHAR 401 + + + +Q+++EV ++ +++L P + R G +D + A+ VGP RASG Sbjct: 315 IKELIKRFEQLKKEVIDVGNLMLDNPEVLGRFDYTGIVDTKTAKLIGLVGPAGRASGIKY 374 Query: 402 DTRADHPFV--GYGLLPMEVHSEQGCDVISRLKVRINEVYTA-------LNMIDYGLDNL 452 D R Y + + + + V SR K E + L + D+ +++ Sbjct: 375 DVRKSFSKAKNIYNR-GIGLVARKDGAVSSRAKTYFYETLDSIEFCIELLKVADFQINDS 433 Query: 453 PGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYM 512 +E P+ F + EA RG+ H +T +N + R++ + ++ NW L + Sbjct: 434 ADKLEKIEKTVLKPNSFIITMEEAWRGELSHCIITDENGNIIRYKIKDPSFHNWTALELV 493 Query: 513 LRGNTVSDAPLIIGSLDPCYSCTD 536 +R + D PL S + Y D Sbjct: 494 VRNEGIYDFPLCNKSFNLSYCGFD 517 >UniRef50_Q8TY43 Ni,Fe-hydrogenase III large subunit n=1 Tax=Methanopyrus kandleri RepID=Q8TY43_METKA Length = 409 Score = 362 bits (929), Expect = 2e-98, Method: Composition-based stats. Identities = 108/394 (27%), Positives = 184/394 (46%), Gaps = 7/394 (1%) Query: 156 RQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFY 215 R+R ++ + + + ++ VP+GP H EP +L V GE ++D + Y Sbjct: 3 RRRREIQSNVQVVDVETGEIEPISHRVPVGPNHPILKEPLRIKLAVRGEEVVDCKVEMGY 62 Query: 216 VHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAIL 275 HRG+EK+ E M + + FL++RVCGIC AH+ + VE R +R ++ Sbjct: 63 CHRGIEKIMEG-MPWQKAAFLAERVCGICSHAHNMCFIGGVEKLAEGDPAPRGLFLRVLV 121 Query: 276 LEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRR 335 E++R+ SHL+ + ++ F+ RE + E +TG R G N++GG+R Sbjct: 122 QELDRIQSHLIANAAYFYSIEHETMFVWNMNTRERVLDCIEEITGNRILTGWNVVGGVRM 181 Query: 336 DLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVR 395 D+ +D + + +R +V + + P ++ R+ G+G + + R + VGP R Sbjct: 182 DVTEDQLNNVLETLDAIRDDVITYRRIAKNDPFIKLRSRGVGVITKDHIRKYRVVGPQAR 241 Query: 396 ASGHAR-DTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPG 454 ASG D R P Y L + + D ++R+ VR +E ++ +I+ +D LP Sbjct: 242 ASGVPESDMRLQEP--VYPELGFKPVYRKEGDNLARILVRYDECLQSIELIERIVDELPE 299 Query: 455 GPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLR 514 G E EAPRG+ ++ + R R + N L + Sbjct: 300 GRHRRELEVN--AGHVDNRVEAPRGELVYDMELAPGGVVKRVTIRTPSVPNIRVLEAIAP 357 Query: 515 GNT-VSDAPLIIGSLDPCYSCTDRMTVVDVRKKK 547 G+ ++DA SLDPC +C +R V+D R+ K Sbjct: 358 GSPSIADAVATYASLDPCVACNERFVVIDEREGK 391 >UniRef50_Q57935 Uncharacterized protein MJ0515 n=17 Tax=Euryarchaeota RepID=Y515_METJA Length = 380 Score = 361 bits (926), Expect = 6e-98, Method: Composition-based stats. Identities = 113/370 (30%), Positives = 184/370 (49%), Gaps = 6/370 (1%) Query: 181 VVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 240 +PIGP+H EP +L +DGE +DA+ + YVHRG+EK+ E + ++ L++RV Sbjct: 7 TIPIGPIHPVLKEPLRIKLVLDGEKPVDAEIEMGYVHRGIEKIMEGKHC-HKGIHLAERV 65 Query: 241 CGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG 300 CGIC + H+ + +E+ I++P++A+ +R + E+ER+HSHL+ + ++ Sbjct: 66 CGICSYVHTMTFAECIEHISKIEIPDKAKYLRVVTCELERIHSHLIASAVYNLSIEHETL 125 Query: 301 FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELV 360 M VRE M + E++TG R G N+IGG+RRD+ ++ M + + E++ ++ Sbjct: 126 AMWLLNVREIIMDLMEMITGNRVNMGYNVIGGVRRDINREMMDEIYKKLDIFEDELKNII 185 Query: 361 DVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHAR-DTRADHPFVGYGLLPMEV 419 +V + P + R+ IG L VGP+ R SG D R H Y L + Sbjct: 186 EVFETGPLIALRSKEIGILPYHEVMRTRAVGPICRGSGLPESDWRLRHST--YQELKFKP 243 Query: 420 HSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRG 479 + D +R+ VR E+ ++ +I L++ + I EAPRG Sbjct: 244 VWREEGDNFARMMVRHEEIIESVRLIREALEHYEECSGDIRVKAEIKGGKGEWRNEAPRG 303 Query: 480 DDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGN-TVSDAPLIIGSLDPCYSCTDRM 538 + + D + R R T N +YML+ TV+DA S+DPC SCT+R Sbjct: 304 EVTYRMEITDGGIIKRIMIRTPTVMNLEAYKYMLKTCPTVADAVSAYTSIDPCVSCTERC 363 Query: 539 TVVDVRKKKS 548 V V+ K Sbjct: 364 IVA-VKDGKE 372 >UniRef50_UPI0001C42022 energy-converting hydrogenase B subunit N EhbN n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C42022 Length = 391 Score = 360 bits (924), Expect = 9e-98, Method: Composition-based stats. Identities = 107/383 (27%), Positives = 191/383 (49%), Gaps = 9/383 (2%) Query: 169 EFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRM 228 E + + + +G +H + EP R FV+ E I DA+ + HRG+E++ E + Sbjct: 3 EKKAKKQEIIETEIQMGTVHPAALEPYRVRFFVEDEIIKDAEITIGVNHRGIERVMEG-L 61 Query: 229 GYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNL 288 + L++++CGIC +H+ + E +G++VP+RA IR I+ E+ERLHSHLL L Sbjct: 62 PVEKANMLTEKICGICSNSHTWNSVRTAEKGLGVEVPDRAVYIRVIVGELERLHSHLLYL 121 Query: 289 GLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGI--RRDLLKDDMIQTR 346 G C ++ M+ F +RET M + ++ G R YG ++IGG+ R +L + + + Sbjct: 122 GHGCETLAHETFSMRVFYIRETIMDLLAMIGGNRVQYGCSIIGGVRPRCELDDNRIQRIL 181 Query: 347 QLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRAD 406 + + V + + + + R G G + E A + GP +RA+G RD R D Sbjct: 182 DGMDLVEKNVLDFANRFVKDSVVASRISGTGYIPQEQALKLAVSGPTLRATGVKRDLRTD 241 Query: 407 HPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIP 466 Y ++ ++ CDV ++L +R+ E++ A+ ++ + +LP G + + I Sbjct: 242 M--YEYDNFDYDIITQDTCDVQAQLLMRVFEIFEAIKIVRQAIRDLPEGKITDRSWEMID 299 Query: 467 HRFALGFAEAPRGDDIH-WSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLII 525 + E PRG H +++ ++ R + +N ++Y N ++D L I Sbjct: 300 TDLIESYIEVPRGTLYHSYAIEDG--RVRHCIIRTPSMSNIGAMQYACIDNHITDGQLCI 357 Query: 526 GSLDPCYSCTDR-MTVVDVRKKK 547 DPC++C+DR + V D K Sbjct: 358 VQCDPCFTCSDRAIEVYDTNYNK 380 >UniRef50_A6Q6W4 Ni-Fe hydrogenase, large subunit HycE n=3 Tax=Epsilonproteobacteria RepID=A6Q6W4_SULNB Length = 455 Score = 359 bits (921), Expect = 2e-97, Method: Composition-based stats. Identities = 122/477 (25%), Positives = 218/477 (45%), Gaps = 25/477 (5%) Query: 60 LFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVR 119 L ++ G + + V E T R + P ++ + P+A+W ER++ Sbjct: 3 LIARYAKEREGTFEIVTVFESE-------TQRETISKENPVIRTLAKKHPSAIWFERKMS 55 Query: 120 DMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKN 179 D +G++ D+R L+ + +P ++P++K +++ + Y++ GD Sbjct: 56 DDFGIVIEDAFDKRPLLHQERFPKAIHPMQK---AFQKNTLDFAEFTPYKYEAIQGDGVF 112 Query: 180 NVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDR 239 V +GP+H EPGHF GE+++ + R FY +RG+EK+ E + E + +R Sbjct: 113 QV-SVGPIHAGIIEPGHFHFSQAGEDMLHQEVRHFYKYRGIEKMLEGKT-LLEAKPVIER 170 Query: 240 VCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDS 299 + G A+ TA+ V A G+++P + A LLE+ER+ HL +LG + GF + Sbjct: 171 ISGNESIAYQTAWRDIVCQAAGMELPLSLRKRHAFLLEMERIIHHLTDLGFIPNDAGFGA 230 Query: 300 GFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQEL 359 ++ E + + + +TG R G + IG + L D+ +++++ Sbjct: 231 ALAFASKLSEDARRQLQNVTGHRF--GFDAIGFENKVL---DISSLYDYLDGLQKDIAFF 285 Query: 360 VDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEV 419 ++ P++ R G L + VG + RASG + D R PF Y E+ Sbjct: 286 ETWIMDIPSLWDRFDTTGILQKADVLKYDTVGVVARASGFSLD-RRSEPF--YLEHGFEI 342 Query: 420 HSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRG 479 +EQ DV +R KVR+ EV ++ M+ + L+ I FAE+ G Sbjct: 343 QTEQSGDVAARFKVRLQEVKNSIVMMKHFLEE----DDTHIDIEKIKDGDYTAFAESSLG 398 Query: 480 DDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 + ++ + + R+ R ++ NW TL M+ N ++D PLI S D Y+ D Sbjct: 399 EL-FMNIEIKDGVIERFFVRDPSFMNWQTLHLMMPNNIIADFPLINKSCDLSYAGND 454 >UniRef50_A3DM94 Membrane bound protein complex subunit mbxL n=2 Tax=Desulfurococcaceae RepID=A3DM94_STAMF Length = 375 Score = 358 bits (920), Expect = 3e-97, Method: Composition-based stats. Identities = 103/373 (27%), Positives = 170/373 (45%), Gaps = 13/373 (3%) Query: 177 KKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFL 236 K V +GP H + F+L +DGE ++D D ++HRG EK+ E R ++ + Sbjct: 4 AKVLTVFLGPQHPGAPGNVGFKLLLDGERVLDIDLIPGFLHRGFEKMMEYRRWDMDLV-M 62 Query: 237 SDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTG 296 S R+C YT ++E GI+ PE+A+ +R I+ E RL SHLL + Sbjct: 63 SARICVEDPDHIELTYTHAMEQIFGIEPPEKAKYVRVIVAEFSRLASHLLWMMYFAGPIA 122 Query: 297 FDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREV 356 RE +K + ++G R + GG+R D+ D +T ++ + ++ + Sbjct: 123 ARYATSWAIAAREEILKWFDYVSGHRIYHHYIFPGGVRWDIPSDFKEKTLKVLKVIKPLI 182 Query: 357 QELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLP 416 ++ D P E+R +GRL P A GP +R SG D R + YG + Sbjct: 183 DDIRDGFFYHPIFEKRARDMGRLKPGDAIRLGATGPTLRGSGVKFDLRKVLKYDAYGEID 242 Query: 417 MEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLP-GGPLMVEGFTYIPHRFALGFAE 475 E+ S + D R VR+ E+Y ++ +I ++ +P GP IP +G E Sbjct: 243 FEIPSGEYGDSYDRALVRLREMYISMEIIRQAVEKMPTEGPYRYRLPATIPAGEGIGRVE 302 Query: 476 APRGDDIHWSMTGDNQ--------KLYRWRCRAATYANW-PTLRYMLRGN--TVSDAPLI 524 + RG+ + + YR + R T A+ L++++ T++D P++ Sbjct: 303 SARGEFLAHILQRPPGARRYSKPLSPYRIKFRGPTMAHLTTVLKHIVHNEEITIADLPVL 362 Query: 525 IGSLDPCYSCTDR 537 IGS DPC DR Sbjct: 363 IGSFDPCPPDIDR 375 >UniRef50_A8MBT0 NADH dehydrogenase (Quinone) n=1 Tax=Caldivirga maquilingensis IC-167 RepID=A8MBT0_CALMQ Length = 424 Score = 358 bits (920), Expect = 3e-97, Method: Composition-based stats. Identities = 105/400 (26%), Positives = 161/400 (40%), Gaps = 29/400 (7%) Query: 165 AETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLA 224 + E +V IGP H S L + G+ I++A YVHR +EKLA Sbjct: 27 PIPKNMVEEAYKSDEYLVLIGPAHPGS-GHMRIILRLKGDYIVEAVPDPGYVHRSVEKLA 85 Query: 225 ETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSH 284 ETR+ + + L +R Y ++E + VP RAQ +R I+ E+ R+ H Sbjct: 86 ETRLFVHNIP-LVERPTIAESSIMDHGYVRAIEELGQLDVPPRAQYLRVIMDELSRIGDH 144 Query: 285 LLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQ 344 L + G+ F G +G+M F +RE + +TGAR T + G+R D+ D + Sbjct: 145 LYDTGILAVFLGHSTGYMWGFGLRELIVDALARMTGARITVSFVIPSGVRWDVHPDVLRY 204 Query: 345 TRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTR 404 + + +++ EL + P R +G L + VGP +RA G D R Sbjct: 205 IYNMTFFIEKKIDELGTIFTKNPVTVSRMKDVGVLTKDQCIKLGAVGPFLRACGVEYDNR 264 Query: 405 ADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFT- 463 P+ Y L E+ D SR VR+ E+ +LN+I + N+P GP++ Sbjct: 265 RARPYAVYDQLEWEIPVADEGDAYSRFLVRVEEIRQSLNIIRQAVKNIPEGPVIGNKLMT 324 Query: 464 -------------------------YIPHRFALGFAEAPRGDDIHWSMTGDNQK-LYRWR 497 +P A EA RG ++ ++ YR R Sbjct: 325 RVPPKEREKVAKDIRNYLFRLLIGLTLPEGEATTLTEAARGTLLYSLVSDGKSNVPYRLR 384 Query: 498 CRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 ++ N LRG + D P I GS DR Sbjct: 385 MITPSWYNLKPFMESLRGYRLMDLPAIYGSWGYFPPEADR 424 >UniRef50_Q2NED9 EhbN n=5 Tax=Methanobacteriaceae RepID=Q2NED9_METST Length = 383 Score = 353 bits (906), Expect = 1e-95, Method: Composition-based stats. Identities = 104/363 (28%), Positives = 183/363 (50%), Gaps = 6/363 (1%) Query: 179 NNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSD 238 + +G +H + EP RLFV+ E + DA+ + HRG+E++ E + + L++ Sbjct: 20 ETEINMGTVHPAALEPYRVRLFVEDEIVKDAEITVGLNHRGIERIMEG-LPVEKANALTE 78 Query: 239 RVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFD 298 +VCGIC H E A+GI++PERA +R + E+ERLHSH+L LG + Sbjct: 79 KVCGICSNGHIYNSCRVGEGALGIEIPERAVYLRVLAEELERLHSHMLYLGHGSEVLCHE 138 Query: 299 SGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGI--RRDLLKDDMIQTRQLAQQMRREV 356 + M+ F +RE+ M + ++ G R YG++++GG+ R DL + + + +V Sbjct: 139 TFAMRIFYIRESVMDLLYMMGGNRVQYGISVLGGVRPRADLNLKEQQRVLDTMDYIDEKV 198 Query: 357 QELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLP 416 + + ++ P + R G G L + A D GP +RA+G+ D R + Y Sbjct: 199 ADFAERFIADPMVMHRITGTGELSQKQALDLHVTGPSLRATGYEYDFRTEM--FEYEPFE 256 Query: 417 MEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEA 476 ++ ++ G DV + + +R E++ + +I + NLP GP++ + + + E Sbjct: 257 FDIITQDGGDVRANILMRATEIFESTKIIRQVIKNLPKGPIVTRDWDLVDSPVYKSYIEV 316 Query: 477 PRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 PRG + S ++ K+ R + +N ++ G+ + DA L I S DPC++CTD Sbjct: 317 PRG-VCYHSYGLEDGKVRHSIIRTPSMSNIGAMQESCIGHPIQDAQLAIVSCDPCFTCTD 375 Query: 537 RMT 539 R Sbjct: 376 RAI 378 >UniRef50_A9BJL6 NADH dehydrogenase (Quinone) n=3 Tax=Thermotogaceae RepID=A9BJL6_PETMO Length = 369 Score = 352 bits (903), Expect = 3e-95, Method: Composition-based stats. Identities = 93/363 (25%), Positives = 161/363 (44%), Gaps = 10/363 (2%) Query: 184 IGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGI 243 +GP H ++VDG+ I+ A +HRG EKL E R+ N + L R+C Sbjct: 8 LGPNHPGMHGNFSVHMYVDGDTIVRARPMPGMLHRGFEKLMERRLWMNNLA-LIPRICVP 66 Query: 244 CGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQ 303 + Y ++E GI+VPE+A IR I+LE+ R+ +HL++LG G +G Sbjct: 67 EPDINEMVYAMAIEELTGIEVPEKAHWIRMIILELARIANHLMSLGGIGGPVGLYTGPNW 126 Query: 304 FFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVL 363 R+ + + E +TGAR + + GG+R+DL ++ + + + + + E D++ Sbjct: 127 GLADRDLILDIFEEITGARIYHMYIVPGGVRKDLREETIEKIKSFLDYLENRLPEYEDLI 186 Query: 364 LSTPNMEQRTVGIGRLDPEIARDFSNVGPMVR-ASGHARDTRADHPFVGYGLLPMEVHSE 422 L ++RT L E+ + G +R A G A D R P+ Y + V + Sbjct: 187 LKNSLFQRRTKDKLLLPAEVVWELGVTGIGMRSAVGEAYDIRKVDPYARYDQVEFYVPTA 246 Query: 423 QGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFT-------YIPHRFALGFAE 475 D +R+ + E Y ++ +I L+ +P + + +P E Sbjct: 247 NYSDGYTRVYFKYLETYQSIKIIRQVLEKMPQKGKVWNKISNGSALRWRVPKGQVYTHVE 306 Query: 476 APRGDDIHWSMTGDNQKLYRWRCRAATYAN-WPTLRYMLRGNTVSDAPLIIGSLDPCYSC 534 RG+ ++ ++ K YR R A+Y + L G + DA L + ++ C Sbjct: 307 CARGEYGYYMVSEGEDKPYRVAVRGASYPQGLLGVEKYLPGTRIEDAALWMDTMGVCPPE 366 Query: 535 TDR 537 DR Sbjct: 367 IDR 369 >UniRef50_A4WMP9 NADH dehydrogenase (Ubiquinone) n=5 Tax=Thermoproteaceae RepID=A4WMP9_PYRAR Length = 407 Score = 352 bits (903), Expect = 3e-95, Method: Composition-based stats. Identities = 105/388 (27%), Positives = 161/388 (41%), Gaps = 26/388 (6%) Query: 174 LGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEV 233 G ++ + GP H +S F + VDG+ +++ YVHR MEKL ETR + Sbjct: 22 EGKRRILDIFWGPQHPSS-GHTRFIVEVDGDIVVNVTPDPGYVHRTMEKLGETRHWIQNI 80 Query: 234 TFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACH 293 L +R+ + AY +VE + V RAQ +R I+ E+ R+ +HL +LGL Sbjct: 81 P-LFERLSLPDAINVTWAYAMAVERVAKLDVSPRAQYLRVIMAELSRISTHLYDLGLHAI 139 Query: 294 FTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMR 353 G +GFM F +RE +++ +++G+R T L GG+R QT+ + Sbjct: 140 MIGSSTGFMWGFGLRELLVQLWAMVSGSRTTPTWVLPGGVRTAPPDAFYEQTKGFLDYLE 199 Query: 354 REVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYG 413 +++ E V +++ P R +G L E A GP R SG D R + + Y Sbjct: 200 KKIDEFVRLVVKNPVGYYRLKDVGYLSKEDAARLMATGPGARGSGIDWDARRVYKYGIYD 259 Query: 414 LLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLP-GGPLMVEGF-TYIPHRFAL 471 +V E D ++R VRI E+ + +I LD +P GPL+ E IP + Sbjct: 260 EFEWDVCVEDAGDSLARTMVRICEIQQSAKIIRQALDRVPKDGPLVGEAVLHRIPPKQRE 319 Query: 472 GFAE----------------------APRGDDIHWSMTGDNQKLYRWRCRAATYANWPTL 509 E RG +K YR R ++ N + Sbjct: 320 KANEIIRLGALYTTMLPQGEGVGVTEGGRGRYFFHVFGDGTEKPYRVRISTPSWQNLRAM 379 Query: 510 RYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 G + D P I GS DR Sbjct: 380 IRAFIGARLMDLPAIYGSFGYFPPEQDR 407 >UniRef50_B1YB08 NADH dehydrogenase (Quinone) n=5 Tax=Thermoproteaceae RepID=B1YB08_THENV Length = 407 Score = 351 bits (902), Expect = 3e-95, Method: Composition-based stats. Identities = 106/390 (27%), Positives = 182/390 (46%), Gaps = 33/390 (8%) Query: 174 LGDKKNNVVPIGPLHVTSDEPGHFRLFV--DGENIIDADYRLFYVHRGMEKLAETRMGYN 231 G ++ VV +GP H S GH RLFV DG+ I + +VHRG+EKLAE R Y Sbjct: 25 RGGERGLVVVVGPQHPGS---GHMRLFVVLDGDIIKEVVPDPGFVHRGVEKLAENR-PYW 80 Query: 232 EVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLA 291 + L ++ + + T ++E A+G++ P RA+ +R + E+ R+ +HL +L L Sbjct: 81 TLIPLVEKASIMDSMNITLPITLALEKALGLEPPPRAKYLRTAMAELSRIRTHLYDLALL 140 Query: 292 CHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQ 351 F G + FM F + + ++ +TGAR T + GG+RRD+ ++ + +L ++ Sbjct: 141 GIFLGHSTAFMWGFALMDLYAEVFAKITGARTTVAYPVPGGVRRDVKREHIEAVEKLLRK 200 Query: 352 MRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVG 411 ++++ V L P + R G+G +D + A + VGP RA+G D R P+ Sbjct: 201 TEEKLRDFKTVFLDNPVTKARLEGVGVVDAKRAAELGVVGPFARAAGIDHDVRKAAPYDA 260 Query: 412 YGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFAL 471 Y L EV +E+ D ++R+ VR E+Y +++++ L NLP G ++ + + + Sbjct: 261 YPELDFEVVTEKAGDAMARVLVRWREMYVSMDIVRQALKNLPEGDVIDQALLF---KNPE 317 Query: 472 GFAEAPRGDDIHW------------------------SMTGDNQKLYRWRCRAATYANWP 507 E G + T Q++YR R ++ N Sbjct: 318 YRREGMGGVLGVYTYMYPEPGEYAAVAEAARGATYIHLWTTGTQRVYRMRYVTPSWRNLK 377 Query: 508 TLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + +RG ++D P + S DR Sbjct: 378 AMAEAMRGERLADMPAVYMSFGYFPPEADR 407 >UniRef50_P15689 NADH-ubiquinone oxidoreductase 49 kDa subunit n=10 Tax=cellular organisms RepID=NDUS2_PARTE Length = 400 Score = 351 bits (902), Expect = 4e-95, Method: Composition-based stats. Identities = 85/396 (21%), Positives = 150/396 (37%), Gaps = 41/396 (10%) Query: 182 VPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 241 V GP H + L ++GE + D + +HRG EKL ET+ Y + DR+ Sbjct: 6 VNFGPQHPAAHGVLRLILQLNGEVVEKMDIHIGLLHRGSEKLMETK-PYLQSMPYFDRLD 64 Query: 242 GICGFAHSTAYTTSVENAMGIQ-VPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG 300 + AY ++E + ++R + E+ R+ +H+L + G S Sbjct: 65 YVSMMVQEHAYCLAIEALLNTTNYTANFVLVRTMFDELTRILNHMLAIACHALDIGSMSS 124 Query: 301 FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRD-LLKDDMIQTRQLAQQMRREVQEL 359 F RE M+ E + G R + + L + + + E+ Sbjct: 125 IFWAFEEREKIMEFYERVCGRRMHAAFYRPNEVNLNFLSVKLLTDILEFNNNCLTTLSEM 184 Query: 360 VDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRAD--HPFVGYGLLPM 417 ++L +QR V IG + + DF G M R++G RD R D + Y L Sbjct: 185 HNILTYNKIWKQRLVNIGSISYKDCLDFGLTGVMARSTGIKRDLRMDAFDTYANYYYLNF 244 Query: 418 EVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGG---------------------- 455 ++ Q D R +R+NE+ ++N+I + L Sbjct: 245 RSYTGQAGDSYDRFLIRMNEMSESINIISQAIFKLTTSKNTCSPASILKALNKKKFISQT 304 Query: 456 --------PLMVEGFTYIPHRFA------LGFAEAPRGDDIHWSMTGDNQKLYRWRCRAA 501 ++ F Y F E+P+G+ ++ + K YR + R+ Sbjct: 305 YKNEYSSMEKLITHFKYWSEGFKIQSNWTYQAVESPKGEFGVTLVSDGSNKPYRCKVRSP 364 Query: 502 TYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 Y + L M +G+ ++D +IG++D + DR Sbjct: 365 AYHHLQVLPKMSKGHLLADLSALIGTIDIVFGEIDR 400 >UniRef50_A0LSU1 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LSU1_ACIC1 Length = 499 Score = 350 bits (899), Expect = 7e-95, Method: Composition-based stats. Identities = 118/495 (23%), Positives = 209/495 (42%), Gaps = 21/495 (4%) Query: 48 FLYYKQGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPR 107 L + LF + + ++ + V V YP+++ Sbjct: 17 ILDRLASNRFASLFATAPPESDLRLT-----ALLASAGSIDAIDVAVPRGSTSYPALSAV 71 Query: 108 VPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAET 167 VPAA W ER++ D++GL P+G P L+LP L + + ++ P + Sbjct: 72 VPAASWYERKIHDLFGLEPLGHPRLDPLILP------LREAQPRPLPGQRSAIPPLTPDE 125 Query: 168 YEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETR 227 + + +P GP+ E + + GE+I R+F HRG+E+ E Sbjct: 126 AAIPSRVLGHGVFTIPHGPVRSGVYESVEYLVETPGEDIPYVGIRVFAKHRGIERRFED- 184 Query: 228 MGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLN 287 + ++ L++RV GI AH+ A+ +VE+ G+ R + +R I E+ER+ +HL Sbjct: 185 LDVSDGVLLAERVEGIASVAHALAFCHAVEDLAGVIPSPRDRSVRVIFAELERIANHLDV 244 Query: 288 LGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQ 347 G +F +E +++ G+R G+ + GGI + Sbjct: 245 ALKLADAAGLAVAVSRFGYHKERILRLIGAACGSRFGRGVVVPGGIGCE-PAISPNALLT 303 Query: 348 LAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADH 407 + REV D+L+ TP+ R G G LDP +AR +GP+ RASG D R Sbjct: 304 RLDDILREVFADADLLMQTPSFLDRLRGTGPLDPALARRHGALGPIGRASGFDDDDRWHR 363 Query: 408 PFVGYGLLP-MEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIP 466 P+ Y LP S D ++RL++R +E+ ++ +I + ++ +P Sbjct: 364 PYDEYSDLPQFPAVSSGSGDALARLEIRWSEIRSSAELIRQAVAHIAALSAPTAEPADVP 423 Query: 467 H------RFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSD 520 +G+AEAP+G+ ++ D ++ R R+A++ N + G+ ++D Sbjct: 424 AAIDRISGRGIGWAEAPQGEVVYVVECDD-GRISRCAPRSASFHNLVLFHDVFAGDILTD 482 Query: 521 APLIIGSLDPCYSCT 535 P I S + Sbjct: 483 FPFIEASFGLSIAGV 497 >UniRef50_A3CUR5 NADH dehydrogenase (Ubiquinone) n=3 Tax=Methanomicrobiales RepID=A3CUR5_METMJ Length = 362 Score = 343 bits (881), Expect = 9e-93, Method: Composition-based stats. Identities = 102/359 (28%), Positives = 172/359 (47%), Gaps = 8/359 (2%) Query: 182 VPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 241 +P+GP+H EP + GE ++ + L Y+ +G+E++ R + EV FL++RVC Sbjct: 9 IPLGPMHPCWKEPVRLKCETAGERVLKTELELGYMKKGIERIMRGR-PWQEVMFLAERVC 67 Query: 242 GICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGF 301 GIC H+ + ++E I VP RA +R ++ E++R+ SH+L C+ ++ Sbjct: 68 GICSVVHNMVFIETMEEISDIPVPPRAAYLRVVVNELDRMASHILANFSYCYTIEHETLA 127 Query: 302 MQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVD 361 M +RET + E +TG+R + GG+R DLL +D ++ E++ V Sbjct: 128 MYLLNIRETVLDNLERITGSRINTAYMIPGGVRFDLLPEDAAALLADLAKVEEEMKRYVR 187 Query: 362 VLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGH-ARDTRADHPFVGYGLLPMEVH 420 + + P + R+ GIG + E A VGP RASG D R HP Y L Sbjct: 188 IFETGPLIALRSKGIGYMSREEAIRAHTVGPTARASGVEDSDLRLRHPT--YRELGFTQI 245 Query: 421 SEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGD 480 + D +R+ VR EV+ ++++I ++ LP GP+ G G EAPRG+ Sbjct: 246 TRTEGDNFARVMVRFQEVFQSIDLIRKCVETLPEGPIRGGGLCKAGEASYAG--EAPRGE 303 Query: 481 DIHWSMTGDNQKLYRWRCRAATYANWPTLRY--MLRGNTVSDAPLIIGSLDPCYSCTDR 537 + T + ++ R + N + ++ +++D S DPC +C +R Sbjct: 304 LTYTIKTDEYGRVVDIAIRTPSIMNIEACAHSMIVDAASIADVTSTFISSDPCIACNER 362 >UniRef50_A0L9R4 Membrane bound protein complex subunit mbxL n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L9R4_MAGSM Length = 391 Score = 343 bits (880), Expect = 1e-92, Method: Composition-based stats. Identities = 101/371 (27%), Positives = 171/371 (46%), Gaps = 7/371 (1%) Query: 173 ELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNE 232 +L K + GP H L + G+ I+DA + Y+HRG EKL E R + Sbjct: 22 DLASGKYLKLWHGPQHPGITGNMSVELTLCGDEIVDAKTHVGYLHRGFEKLMERRTFI-Q 80 Query: 233 VTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLAC 292 + RVC + Y +VE GI+ PERA+ IR ++LE+ R++S+L+ LG Sbjct: 81 CFPIVCRVCVPEPDFNEYCYAAAVEELAGIECPERARWIRTLILEMGRINSYLMYLGGQS 140 Query: 293 HFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQM 352 G +R+ + E LTGAR + L GG+R L + + + +++ Sbjct: 141 GAFGMGVIGQWTTYIRDLMLDRFEELTGARIYHMFILPGGVRDGLPEGFEQRMEETLREL 200 Query: 353 RREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGY 412 ++++ DVL ++R+VG+G +DP + GP RA+G A+D R D P++ Y Sbjct: 201 ESTMKDVRDVLFHNAVFKKRSVGVGVIDPAWLEPYGVTGPNARAAGVAKDVRIDQPYLVY 260 Query: 413 GLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLP-GGPLMVEGFT----YIPH 467 L E + D+ +R VR ++ ++++I L +P GP+M + IP Sbjct: 261 PELSYEAIVGKDSDIYTRADVRYRDLLQSVDLIRQILARMPHEGPVMAKLPNVLHWKIPQ 320 Query: 468 RFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYAN-WPTLRYMLRGNTVSDAPLIIG 526 E RG+ ++ +T + R R +Y + L +M+ +SD ++ Sbjct: 321 GETYIRGECSRGEYGYYVVTDGSGYPRRINVRGPSYTHAVALLEHMIINQNISDVAGLMV 380 Query: 527 SLDPCYSCTDR 537 SL +R Sbjct: 381 SLHTYPPEVER 391 >UniRef50_UPI00019012E4 NADH dehydrogenase subunit D n=1 Tax=Mycobacterium tuberculosis T92 RepID=UPI00019012E4 Length = 424 Score = 331 bits (849), Expect = 5e-89, Method: Composition-based stats. Identities = 85/300 (28%), Positives = 150/300 (50%), Gaps = 4/300 (1%) Query: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235 + VV +GP H ++ L ++GE +++A + Y+H G+EK E R VTF Sbjct: 35 PGERIVVNMGPQHPSTHGVLRLILEIEGETVVEARCGIGYLHTGIEKNLEYRYWTQGVTF 94 Query: 236 LSDRVCGICGFAHSTAYTTSVENAMGI--QVPERAQMIRAILLEVERLHSHLLNLGLACH 293 ++ R+ + F + TAY VE +GI ++PER +IR +++E+ R+ SHL+ L Sbjct: 95 VT-RMDYLSPFFNETAYCLGVEKLLGITDEIPERVNVIRVLMMELNRISSHLVALATGGM 153 Query: 294 FTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMR 353 G + FR RE + + E +TG R GG+ +DL + + + +Q+R Sbjct: 154 ELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYIRPGGVAQDLPPNAATEIAEALKQLR 213 Query: 354 REVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYG 413 + ++E+ ++L + RT G+G LD GP++R++G D R P+ GY Sbjct: 214 QPLREMGELLNENAIWKARTQGVGYLDLTGCMALGITGPILRSTGLPHDLRKSEPYCGYQ 273 Query: 414 LLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYI-PHRFALG 472 +V ++ CD R +R+ E++ ++ +++ LD L GP M+ P +G Sbjct: 274 HYEFDVITDDSCDAYGRYMIRVKEMWESMKIVEQCLDKLRPGPTMISDRKLAWPADLQVG 333 >UniRef50_A5FW46 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FW46_ACICJ Length = 476 Score = 323 bits (828), Expect = 1e-86, Method: Composition-based stats. Identities = 129/474 (27%), Positives = 199/474 (41%), Gaps = 32/474 (6%) Query: 66 RKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLI 125 + +G + YV S + V A PS+ P W ERE D G+ Sbjct: 33 PEADGRQTLRYVSSRPGIAGFEVW---SVPAG-GTVPSIATIWPLLGWYERETADHRGIA 88 Query: 126 PVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIG 185 G P+ L+ PLR D +R + V+P G Sbjct: 89 FSGQPEPFSLIA---------PLRADEEADLRRLPGLS------------GDAVQVLPFG 127 Query: 186 PLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICG 245 P+ E F F GE I+ LF HRGME + L++RV G+ Sbjct: 128 PVRAGVVESAEFSFFYVGEAILHYVPHLFLKHRGMEDRFVDQTP-ETGLVLAERVSGVGS 186 Query: 246 FAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFF 305 AH+ AY ++E A + VP RA+ R I+ E+ERL++HL LG T + Sbjct: 187 VAHALAYAQAMEAAAQVAVPGRARYQRVIVAELERLYNHLHYLGHLADTTTLKVAHAEGA 246 Query: 306 RVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLS 365 + E ++ +TG+R G+ GG+RR+L + + +R ++ + L + Sbjct: 247 LLAERVKQIGARVTGSRFLRGVIAPGGLRRELRVEGLAGA---LDALRAPIRRYIARLDA 303 Query: 366 TPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYG--LLPMEVHSEQ 423 + + R G L E+A D GP+ RASG RD R DH + Y L + V + Sbjct: 304 SESHFDRLATTGVLPREVAFDQGATGPVARASGLDRDLRRDHAYAAYDDPDLALAVATGT 363 Query: 424 GCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIH 483 D +R +VRI E+ AL MI + PGG + V A+G+AE+PRG I+ Sbjct: 364 DGDAHARARVRIAEIENALLMIVRAIALTPGGAIRVACAPAA-GAEAMGWAESPRGTLIY 422 Query: 484 WSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 G + +L R + ++ +++NW Y + G + D + S + R Sbjct: 423 AVHVGPDGRLARVKIKSPSFSNWRVFPYTVHGTNMMDYAINEASFGLTIAGCAR 476 >UniRef50_C6WGH3 NADH dehydrogenase (Quinone) n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WGH3_ACTMD Length = 358 Score = 319 bits (819), Expect = 1e-85, Method: Composition-based stats. Identities = 100/364 (27%), Positives = 152/364 (41%), Gaps = 23/364 (6%) Query: 177 KKNNVVPIGPLHVTSDEPGHFRLFV-DGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235 + VV +GPLH ++ RL V D E I A+ + ++HRG EKL E R Y +V Sbjct: 15 GVDRVVDLGPLHPSAHGAYRLRLTVRDDEVITSAEPLVGHLHRGAEKLFEVR-DYRQVLT 73 Query: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 295 L++R + F + A +VE G+ VP RAQ +RA+L E+ R+ +HL+ L Sbjct: 74 LANRHDWLAAFCNELAVALAVERMTGMDVPPRAQWLRALLCELNRVMAHLVFLAPLTDPV 133 Query: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 355 R RE + E +G R + N IGG+R D+ + + Sbjct: 134 AAA-------RGREAVQAVLEEASGGRIHFMANRIGGLREDVPAGWAERVAGALDAVE-- 184 Query: 356 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415 P + G+G L A GP+ RASG D R D P Y L Sbjct: 185 ----------VPEVPTGLAGLGVLSRADALARGVTGPIGRASGVDLDLRRDDPLPAYREL 234 Query: 416 PMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPL--MVEGFTYIPHRFALGF 473 + G D +R+ ++++ A+ + L LPGGP+ + P Sbjct: 235 DVRPSVRDGGDAHARVACMVDDLAQAVALARECLRRLPGGPVNLRLPKAVKAPEGSVYTR 294 Query: 474 AEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYS 533 EAP G + + +R + R ++ N L +L G V+ PL++GS Sbjct: 295 VEAPLGVSGVHLASRGEKTPWRLKLRTPSFNNVQALSALLPGTPVAQLPLVLGSFAVVVG 354 Query: 534 CTDR 537 DR Sbjct: 355 DIDR 358 >UniRef50_D1LDT9 NADH dehydrogenase subunit 7 (Fragment) n=2 Tax=Euplotidae RepID=D1LDT9_EUPCR Length = 462 Score = 319 bits (817), Expect = 2e-85, Method: Composition-based stats. Identities = 89/410 (21%), Positives = 152/410 (37%), Gaps = 44/410 (10%) Query: 171 INELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGY 230 +N+L + ++ GP H S F L ++GE I AD + ++HRG EKL E R Sbjct: 53 LNKLEQTQTFMMNFGPQHPASHGVLRFVLQLEGEYIRHADANIGFLHRGTEKLIEQRTYL 112 Query: 231 NEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQV-PERAQMIRAILLEVERLHSHLLNLG 289 + + DR+ + + AY ++EN +G +RA+ E+ RL +H L + Sbjct: 113 KSLPYF-DRLDYVSMMSQEHAYCLAIENLLGSSTFTSFFVQVRALFDELTRLMNHFLGIS 171 Query: 290 LACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRR-DLLKDDMIQTRQL 348 G S F RE M+ E ++GAR + L I Sbjct: 172 THSLDVGNMSPAFWAFEERERLMEFYERVSGARMHAAFYRPNDLDWTGLNYQFFIDLLFF 231 Query: 349 AQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTR--AD 406 + + E+ +L + R V IG +D F+ G + R++G +D R Sbjct: 232 LNNTYKSITEMFVILATNNIWRSRLVRIGVVDNAQVPLFAASGVVSRSAGFKKDLRILKT 291 Query: 407 HPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNL-------PGGPLMV 459 + Y L + + D R +RI E+ ++ +I + NL P Sbjct: 292 STYSYYWFLKLRSFLGKMGDCYDRFIIRIREMLESVFIIYQIISNLLVVFESTTALPFWY 351 Query: 460 EGFTY--------------------------------IPHRFALGFAEAPRGDDIHWSMT 487 +Y +P EAP+G+ ++ Sbjct: 352 NTESYVSATFTKSQFNKKSTSMEALITHFKHYSEGIKVPAGLVYQSVEAPKGEFGVSLIS 411 Query: 488 GDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + K +R + R Y + + +RG+ +D I+GS D + R Sbjct: 412 DGSSKPFRCKIRTPAYHHLQFMSSQIRGHFFADMITILGSQDIVFGEVIR 461 >UniRef50_Q5DUX5 NADH-ubiquinone oxidoreductase 49 kDa subunit n=3 Tax=Nyctotherus ovalis RepID=NDUS2_NYCOV Length = 412 Score = 311 bits (798), Expect = 4e-83, Method: Composition-based stats. Identities = 85/386 (22%), Positives = 158/386 (40%), Gaps = 30/386 (7%) Query: 181 VVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 240 ++ GP H S + + GE + D + ++HRG E+L E N F+ DR+ Sbjct: 28 ILNFGPQHPASHGVLRLVIVIIGEVVTKLDPHIGFLHRGTERLVEEHSYMNAAVFM-DRL 86 Query: 241 CGICGFAHSTAYTTSVENAM-GIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDS 299 + AY +VE A+ ++ R Q++R I E+ R+ +HLL++ G + Sbjct: 87 DYTTVLTQTHAYCLAVEQALAKSRLCIRTQLLRTIFDELSRILNHLLSIATHALDIGTMA 146 Query: 300 GFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDL-LKDDMIQTRQLAQQMRREVQE 358 F RE M++ E ++GAR L + + + + ++ + E Sbjct: 147 MLFWAFEDRERIMELYEYISGARMHTALYYPNQTLDHILTNELLAKILIFSRNSEKTYTE 206 Query: 359 LVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRA--DHPFVGYGLLP 416 + L + R GIG + EI+ + GP+ R++G D R+ ++ + Y L Sbjct: 207 IYIALYNNRVWRLRLCGIGVVSTEISTSTTISGPVARSTGLQLDMRSGENYQYGYYASLT 266 Query: 417 MEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNL-----------------PGGPL-- 457 + + D R +R+ E++ + +I L L P + Sbjct: 267 LRIFLGISGDSFDRFIIRLRELFESTRLIYNSLIELSAYINISVYNMCSYSNNPHLKIES 326 Query: 458 MVEGFTYIPHRFAL------GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRY 511 ++E F Y + L GF E+ +G + + YR R+ Y + L Sbjct: 327 LIELFRYSLGEYLLNISLVSGFVESGKGIFGIMLAANNTNRPYRLYIRSPAYMHLQLLPK 386 Query: 512 MLRGNTVSDAPLIIGSLDPCYSCTDR 537 + G+ ++D ++GS+D + DR Sbjct: 387 LGAGHHIADLATLLGSIDVVFGEVDR 412 >UniRef50_B0SCU7 Metal (Ni/Fe) hydrogenase, large subunit n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SCU7_LEPBA Length = 475 Score = 307 bits (787), Expect = 6e-82, Method: Composition-based stats. Identities = 91/384 (23%), Positives = 161/384 (41%), Gaps = 17/384 (4%) Query: 168 YEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETR 227 Y + +GP+H EPGHFR VDGE I RL + RG+ + Sbjct: 93 YHGLKVPFSDGEYSHAVGPIHAGIIEPGHFRFIVDGEVIRHLTIRLGFQKRGIRDHLLHK 152 Query: 228 MGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLN 287 N+V S+ + G ++ A++ E+ I V + ++ R+ILLE+ER+ H+ + Sbjct: 153 -AMNQVMPYSEMISGDTSVGYALAFSKIYEDLYEIPVSKEIRLFRSILLELERIAVHIGD 211 Query: 288 LGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLL---KDDMIQ 344 LG G+ + R ++ + E TG R + G + + K Sbjct: 212 LGGISEDIGYYPLYGVCVTERGAALGLMEAWTGHRFGKSVVRPGRLYLNNRLNAKQAKES 271 Query: 345 TRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTR 404 +QL ++++ + LS +++R G G + ++F VG + R +G D R Sbjct: 272 FKQLKNAYIKKIRPQILRALSISTLKERMQGCGFISEMDVQNFGFVGMVARMAGVNEDLR 331 Query: 405 AD-HPFVGYGLLPM-EVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGF 462 + + + LP+ E H DV +R+ +R +E+ +++ I+ ++ + L+ E Sbjct: 332 IENFDYPNWNPLPLKEEHHHYNGDVWARMYIRYSEIEQSMDWIEKTMEEI-NWDLLWEPK 390 Query: 463 TYIPH----------RFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYM 512 +P+ F EA RG + +N + R + NW L Sbjct: 391 VKVPNQEILTKRTKPGFYYSAVEAWRGPLLVALQFDENGLVNNSYIRDPSVLNWHALELA 450 Query: 513 LRGNTVSDAPLIIGSLDPCYSCTD 536 +RG V+D PL S + Y D Sbjct: 451 VRGEQVADFPLNNKSFNLSYVGFD 474 >UniRef50_Q0BPG8 Formate hydrogenlyase subunit 5 n=1 Tax=Granulibacter bethesdensis CGDNIH1 RepID=Q0BPG8_GRABC Length = 517 Score = 305 bits (782), Expect = 3e-81, Method: Composition-based stats. Identities = 107/458 (23%), Positives = 179/458 (39%), Gaps = 16/458 (3%) Query: 89 TVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWP---DEL 145 + V +P+++P PAA W ER +RD++G D R + WP Sbjct: 65 ILPVATPIEGGRFPALSPFRPAAAWQERAIRDLWGYEAEHGVDSRPWLDHGRWPISAPLS 124 Query: 146 YPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGEN 205 Q T F++ D + IGP+H EP RL + G Sbjct: 125 PRPGPPLPPPEQAEWRMTSPFASSFVSSRPDIALHERSIGPVHPLMREPAQLRLHLHGTL 184 Query: 206 IIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVP 265 I A++RL Y HRG++ L + + ++ R+ G AH A+ + E A+ ++ P Sbjct: 185 IRQAEWRLGYTHRGIQWLMRGK-PLRDAIRIAARITGDAALAHGLAFARAAEAALRLEPP 243 Query: 266 ERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTY 325 RA ++R ++ E+ER HL L G D+ + RE ++ + G R Sbjct: 244 PRALLLRGLMNELERCAVHLHVLAATASAAGADTYAAKLSAWRERLLRAIQEAFGNRMMI 303 Query: 326 GLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQR-----TVGIGRLD 380 L + GG+ DLL + Q + R + EL++ + ++ G L Sbjct: 304 DLLIPGGVLTDLLDGTA--LETVLQALARTMPELIEGYETAASLSGHGLCACLRGCAVLS 361 Query: 381 PEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYT 440 A + GP RASG D R +G + V + D +R++VR+ E+ Sbjct: 362 GSDAVSLAVPGPAGRASGRPHDLRTTWQQAPHGTVHRLV--LENGDADARMRVRLAEIQE 419 Query: 441 ALNMIDYGLDNLPGGPLMVEGF--TYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRC 498 +L + L++LP GP+ T G E+ RG HW + + Sbjct: 420 SLRLALLFLESLPVGPIANPMPIGTGNASGEGYGGVESARGACWHWLRI-EGGMVVSAHA 478 Query: 499 RAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 ++ P + L G + + + S + D Sbjct: 479 ADPSWRLIPAIEAALPGTDIDRLGVALASFALSPAGAD 516 >UniRef50_C0SF51 NADH-ubiquinone oxidoreductase 49 kDa subunit n=1 Tax=Paracoccidioides brasiliensis Pb03 RepID=C0SF51_PARBP Length = 447 Score = 299 bits (767), Expect = 1e-79, Method: Composition-based stats. Identities = 87/400 (21%), Positives = 168/400 (42%), Gaps = 25/400 (6%) Query: 149 RKDSMDYRQRPAPTTDAETYEFINELGDKK---NNVVPIGPLHVTSDEPGHFRLFVDGEN 205 ++ P + AE +E+G+ + + V GP H + L ++GE Sbjct: 62 APGGPKHQPIKPPGSYAEPSALESEVGNGRKIRHYTVNFGPQHPAAHGVLRLILELNGEE 121 Query: 206 IIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVP 265 I+ AD + +HRG EKL E + Y + DR+ + + ++ +VE + I++P Sbjct: 122 IVRADPHVGLLHRGTEKLIEYKT-YMQALPYFDRLDYVSMMTNEQCFSLAVEKLLNIEIP 180 Query: 266 ERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTY 325 ERA+ IR + E+ R+ +HL+++ G + F+ F RE M+ E ++GAR Sbjct: 181 ERAKWIRTMFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHA 240 Query: 326 GLNLIGGIRRDLLKDDMIQTRQLA---QQMRREVQELVDVLLSTPNMEQRTVGIGRLDPE 382 GG+ +D+ + Q A +++ ++S G+L+P Sbjct: 241 AYIRPGGVHQDIPLGLLDDIYQWATHSATASTKLKNCSPKIVS-----------GKLEPR 289 Query: 383 IARDFSNVGPMVRASGHARDTRADHPFVGYGLLP--MEVHSEQGCDVISRLKVRINEVYT 440 R F + + + A F G P + + + VR+ + Sbjct: 290 NRRRF--LPQRLSITALAESCSVAPLFHGMSANPNLRRLRPGRIRRAYAAGPVRVEDYKI 347 Query: 441 A---LNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWR 497 + + ++ L L+ +P EAP+G+ + ++ +++ YR + Sbjct: 348 SPPPRAAMKENMEALIHHFLLFTKGYAVPPGETYSAIEAPKGEMGVFLVSDGSERPYRCK 407 Query: 498 CRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 RA +A+ + RG+ ++DA IIG++D + DR Sbjct: 408 IRAPGFAHLSCFDQISRGHLLADAVAIIGTMDLVFGEVDR 447 >UniRef50_A5UWP3 NADH-ubiquinone oxidoreductase, chain 49kDa n=2 Tax=Roseiflexus RepID=A5UWP3_ROSS1 Length = 358 Score = 294 bits (752), Expect = 9e-78, Method: Composition-based stats. Identities = 95/357 (26%), Positives = 159/357 (44%), Gaps = 4/357 (1%) Query: 182 VPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRG-MEKLAETRMGYNEVTFLSDRV 240 + +GP H P F L + + ++D +Y+ + RG E+L R+ + L R+ Sbjct: 5 LALGPFHPAWLGPQRFILHIADDRVVDVEYQNGFNERGCAERL--PRLPLPDALHLVARI 62 Query: 241 CGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG 300 CG C FAHS A+ ++E +V RA ++R + E+ER +HL G + Sbjct: 63 CGECSFAHSLAFCQAIEQVQRRKVGARAALLRVAIAELERTAAHLYTARAVLDAIGMEQR 122 Query: 301 FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELV 360 + S M ++TG R + GG+ RDL + + + M ++ + Sbjct: 123 GAILDHFCQQSRDMLALVTGGRIPPPVCAPGGLLRDLTPVERQEVLAMLPGMSADLYRFI 182 Query: 361 DVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVH 420 D L+ + RTV +G L A F GP+ RASG RD R D P+ Y +L ++ Sbjct: 183 DRLIDQRFLLMRTVEVGVLPRAAAEQFGVRGPLARASGIRRDVRVDQPYAAYSMLDVQPI 242 Query: 421 SEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGD 480 ++G DV +RL + + E Y + +++ L LP +VE +P A E PRG Sbjct: 243 IQEGGDVYARLLLLLLEAYEGVKLVESALQRLPEEDPIVELPHELPRGQASSVVEGPRGA 302 Query: 481 DIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + + +L R + + R +L + D I+ SL C +C ++ Sbjct: 303 IRYTLESDG-VRLTRVQIDTPRQCDRLLARTLLSRAQLDDVMAILASLAVCVACAEQ 358 >UniRef50_A9B5Q0 NADH-ubiquinone oxidoreductase chain 49kDa n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B5Q0_HERA2 Length = 368 Score = 290 bits (742), Expect = 1e-76, Method: Composition-based stats. Identities = 98/359 (27%), Positives = 153/359 (42%), Gaps = 4/359 (1%) Query: 179 NNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGM-EKLAETRMGYNEVTFLS 237 + V+P+GP H P L V+GE I D ++R Y +RG+ E+L TR + L Sbjct: 12 SYVLPLGPFHPDWQTPMRMVLRVEGEQIADVEFRDGYTNRGISERL--TRTTIPQGLHLV 69 Query: 238 DRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGF 297 +C AHS + ++E + I ERA +R + EVER HL + G Sbjct: 70 SHICAADSHAHSLGFCLALEQLLKINASERAAALRLLACEVERATVHLSTMKEVLTILGL 129 Query: 298 DSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQ 357 ++ ++ + L G + GG+R+DL + +++ R + Sbjct: 130 QRDAEHVQKLHHGLFEVMQHLCGTSSPPNYIVPGGVRQDLSSTEQESMALQFRRLERLMY 189 Query: 358 ELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPM 417 VD + + +R VG+G L E A F GPM RA+G D R D + Y P Sbjct: 190 RFVDRFIDHRGVLRRCVGVGVLSREAAEQFGVRGPMARAAGIGFDARIDRAYGAYAQFPP 249 Query: 418 EVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAP 477 +++ DV +RL + E + +L + L NLP G +P E+ Sbjct: 250 SRVTQERGDVYARLVIFSLEAFESLKLAIRVLANLPSGDWAGNAPDSVPQGSVTSNIESA 309 Query: 478 RGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 RG + + KL R A + R +L G + DAPLII S C +C++ Sbjct: 310 RGTLRYTVQSNG-VKLTSVRIDAPRQFDRLIARTILAGMNIDDAPLIIASASACTACSE 367 >UniRef50_C7JEU8 NADH-ubiquinone oxidoreductase 49kDa subunit n=8 Tax=Acetobacter pasteurianus RepID=C7JEU8_ACEP3 Length = 498 Score = 284 bits (727), Expect = 6e-75, Method: Composition-based stats. Identities = 109/502 (21%), Positives = 187/502 (37%), Gaps = 33/502 (6%) Query: 41 YLPEVVEFLYYKQGGWLSV-LFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKP 99 ++V+ L + ++ + G D + L + G + + Sbjct: 25 AWRDLVDALKHDDLPFVGLWCDGTD----------VHALFLPDGQP----LAATLALEDG 70 Query: 100 EYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRP 159 YP+++P + ER + D+YG + D R L+ D W Q+ Sbjct: 71 RYPALSPARDISCLYERRIYDLYGAEGMWATDVRPLLDHDVWSSSTPLAEHPGAGGGQKG 130 Query: 160 APTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRG 219 + E +++ GD + GP + P H L + I A+ Y HRG Sbjct: 131 L--IHFQPAEHMHQEGDMADG---WGPATGGMEPPLHVALAMQEGRIRAAETVTGYAHRG 185 Query: 220 MEKLAETRMGY-NEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEV 278 ME R + LS RV AH A+ +VE+A QV +++R LLE+ Sbjct: 186 ME--LRWRNSRVEDACKLSARVASGQSVAHQVAFCLAVEDACKEQVGPEIRLLRVALLEL 243 Query: 279 ERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLL 338 ER+ HL L G +RE ++ A +TG+R + + GG+ Sbjct: 244 ERICHHLFLLADMARLAGARLVASGCMGLREKLIQEAAPITGSRLLMDVCVPGGLSLRHA 303 Query: 339 KDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASG 398 +L + R+ L+ + P + + GIG++ ++ GP RA+G Sbjct: 304 TQMGDMCGRLCEVAERDYPALLALWQEYPGLSMQLAGIGKVTADLLERVGLDGPTARAAG 363 Query: 399 HARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNL---PGG 455 D R P GY + Q R + + EV +L M+D + GG Sbjct: 364 WDCDGRRMMP--GYEGIWRFTSGRQDGTAEDRAMLLLEEVGESLRMLDEVASRIGLTAGG 421 Query: 456 PLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRG 515 + + + G E P G ++W + ++ + R + A T +L G Sbjct: 422 SVQLS----MQDSEGTGMVEGPWGGILYWVRLKE-GRVEQVFARNPSSAALLTFEAILPG 476 Query: 516 NTVSDAPLIIGSLDPCYSCTDR 537 + D L+ SLD + D+ Sbjct: 477 HQPDDVALLARSLDINAAALDQ 498 >UniRef50_Q056K8 Metal (Ni/Fe) hydrogenase, large subunit n=4 Tax=Leptospira RepID=Q056K8_LEPBL Length = 469 Score = 275 bits (704), Expect = 3e-72, Method: Composition-based stats. Identities = 78/377 (20%), Positives = 151/377 (40%), Gaps = 9/377 (2%) Query: 168 YEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETR 227 Y+ + + +GP+H EPGHFR V GE I + D RL + RG+ L + + Sbjct: 93 YKGLKVPIPASHYSHAVGPIHAGVIEPGHFRFIVKGEEIRNLDIRLGFQKRGLIDLIKGK 152 Query: 228 MGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLN 287 + + ++ + G A++ A++ E A I VP+ R +LLE+ER+ +H+ + Sbjct: 153 GSKDSFPY-AEAISGDSTIAYAIAFSRIFEEAQKIAVPQELDFARLVLLELERIATHIGD 211 Query: 288 LGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGG--IRRDLLKDDMIQT 345 +G G+ R + + E LTG R G G +R+ L ++ + + Sbjct: 212 MGAIAGDVGYYPLQGVCSLQRGVPLGVMEALTGNRFGRGALSPGKIVLRKGLNREKLNEL 271 Query: 346 RQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRA 405 + + + +V + + +R G + + R +G + + +G +RD R+ Sbjct: 272 AERIRSVTADVVAHFERAANVSTNRERLQSCGIIRQKQVRHLGFIGMVEKCTGLSRDLRS 331 Query: 406 DH-PFVGYGLLPMEVHSEQ-GCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLM----V 459 ++ + +E++ + D +R +R E+ + + + L + V Sbjct: 332 LEKSYMFSSPISLELNRDHMKGDAWARFYLRCEELKNSGKWLIDAIPKLEAAFSLKFGKV 391 Query: 460 EGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVS 519 + + E RG + + R + NW L +RG + Sbjct: 392 PSKSSVKKGTYYSAVEGWRGPVLVSLDLDATGSIENAYIREVSVPNWHALELAVRGEYIG 451 Query: 520 DAPLIIGSLDPCYSCTD 536 D PL S + Y D Sbjct: 452 DFPLNNKSFNLSYVGVD 468 >UniRef50_UPI000186E11F NADH-ubiquinone oxidoreductase 49 kDa subunit, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186E11F Length = 369 Score = 267 bits (683), Expect = 8e-70, Method: Composition-based stats. Identities = 67/271 (24%), Positives = 115/271 (42%), Gaps = 11/271 (4%) Query: 132 ERRLVLPDDWPD-ELYPLRKDSMDYRQRPAPTTD-------AETYEFINELGDKKNN--V 181 L+ W + +P R+ +YR+ + F+++ + + V Sbjct: 29 PSYLITSKRWGHNKWFPDRRYFEEYRKDHPIPQPLIDRDTVEKYNPFLDDEPNTEIQNVV 88 Query: 182 VPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 241 + GP H + L + GE + D + +HRG EKL E + Y + DR+ Sbjct: 89 LNFGPQHPAAHGVLRLILELRGERVAKCDPHIGLLHRGTEKLIEYKT-YTQALPYFDRLD 147 Query: 242 GICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGF 301 + + Y+ +VE + I+VP RA+ IR + E+ R+ +HL+ +G G + F Sbjct: 148 YVSMMCNEQCYSLAVEKLLNIEVPLRAKYIRTMFAELTRILNHLMGIGTHILDVGALTPF 207 Query: 302 MQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVD 361 FF RE M+ E ++GAR GG+ +DL M Q + + ++ D Sbjct: 208 FWFFEEREKLMEFYERVSGARMHAAYIRPGGVSQDLPLGLMDDIHQFLTKFGSILDDVDD 267 Query: 362 VLLSTPNMEQRTVGIGRLDPEIARDFSNVGP 392 VL + RT IG + E A ++ P Sbjct: 268 VLTNNRIWVDRTQNIGVISAEDALNYGYTVP 298 Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 37/73 (50%) Query: 465 IPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLI 524 +P EAP+G+ + ++ + K YR + +A +A+ L + +G ++D I Sbjct: 297 VPPGATYTAIEAPKGEFGVYLVSDGSSKPYRCKIKAPGFAHLAALDKIGKGLFLADIVAI 356 Query: 525 IGSLDPCYSCTDR 537 IG+LD + DR Sbjct: 357 IGTLDIVFGEVDR 369 >UniRef50_D1HPS0 Whole genome shotgun sequence of line PN40024, scaffold_116.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1HPS0_VITVI Length = 441 Score = 264 bits (675), Expect = 6e-69, Method: Composition-based stats. Identities = 73/276 (26%), Positives = 113/276 (40%), Gaps = 26/276 (9%) Query: 253 TTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSM 312 + E IQVP+RA IR I+LE+ R+ SHLL LG G + F FR RE Sbjct: 8 ANAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGVQTPFFYIFRERELVY 67 Query: 313 KMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQR 372 + E TG R + IGG+ DL + + V E +++ P +R Sbjct: 68 DLFEATTGMRMMHNYFRIGGVVVDLPHGWIDKCLDFCDYFLTGVAEYQKLIMRNPIFLER 127 Query: 373 TVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLK 432 G+G + E A ++ GPM++ASG D + Y EV ++ D +SR Sbjct: 128 VEGVGIIGVEEAINWGLSGPMLQASGIQWDLLKVDHYECYDEFDWEVQWQKEGDSLSRYL 187 Query: 433 VRINEVYTALNMIDYGLDNLPGGP---LMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGD 489 VRI E+ + +I L +PGGP L + F D Sbjct: 188 VRIGEMMAFIKIIQQALKGIPGGPYENLEIRCFDRARD-----------------LELND 230 Query: 490 NQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLII 525 + +R ++ N L +++ ++D I+ Sbjct: 231 ----FEYRFI--SFINLQILPQLVKRMKLADIMTIL 260 >UniRef50_D1Y9R2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit n=3 Tax=Propionibacterium acnes RepID=D1Y9R2_PROAC Length = 382 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 96/364 (26%), Positives = 142/364 (39%), Gaps = 18/364 (4%) Query: 182 VPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 241 + +G LH + VD + I + + +HRG EKL E R GY ++ L+ R Sbjct: 29 LDLGHLHPSRPGLVTITTTVDDDVITSSQVNVGNLHRGDEKLFEAR-GYRQIPMLASRHD 87 Query: 242 GICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSH---LLNLGLACHFTGFD 298 F T ++E+AMGI +P R IR +L E R+ SH L +G C G + Sbjct: 88 WTAPFIGETGAAHAIEDAMGITIPTRVAWIRTLLAEFSRITSHFTFLSWVGHHCDDAGLE 147 Query: 299 SGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQE 358 + E + ++ + +G R + IGG+R + + V Sbjct: 148 NAIATAI---ENARRIWQRCSGNRIHPMITRIGGLRIHPESEWQPTLGEWLDDANALVTW 204 Query: 359 LVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPM- 417 L L +T + G+ + + + GP+ RASG DTR Y L Sbjct: 205 LRTALDATVGV----RGVAVIPTNMIDRYGLSGPVSRASGVDLDTRRR--TAVYDELKWP 258 Query: 418 EVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLP--GGPLMVEGFT--YIPHRFALGF 473 EV E D SRL N+ + ++ LD LP GPL T P Sbjct: 259 EVVIEPRGDAYSRLATLCNDAAVSSSLCRQILDRLPNLDGPLETRLPTTIKAPRGRTWTT 318 Query: 474 AEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYS 533 EAP G + + + +R R T+AN L +L G V D I SL Sbjct: 319 IEAPWGRAGYLLESRGSTTPWRMALRTPTFANVQVLEAVLPGTRVDDVEATIASLGWTLG 378 Query: 534 CTDR 537 D+ Sbjct: 379 DLDK 382 >UniRef50_B5ZIZ9 Ni Fe-hydrogenase III large subunit-like protein n=3 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=B5ZIZ9_GLUDA Length = 510 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 112/524 (21%), Positives = 188/524 (35%), Gaps = 37/524 (7%) Query: 21 VVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVLFGNDERKLNGHYAVYYVLSM 80 ++ ++ ++V L L+ + + + L + Sbjct: 15 ALIRRGEAEAGAWRFRLEEEGWRDLVATLARDPLP-FVGLWADGQD--------VHALFL 65 Query: 81 EKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDD 140 E G + + V Y ++ PAA ER V D++G + D R + Sbjct: 66 EGGERVLV---ASVAPYGGRYLGLSGVRPAASLPERCVHDLWGFEAMEARDTRPWLDHGV 122 Query: 141 WPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLF 200 W +PL + EF + G ++ IGP PGH RL Sbjct: 123 W-TATWPLGPRPGPVSW------PPDPPEFRPQPGGG--TILGIGPADGGHHTPGHLRLA 173 Query: 201 VDG-ENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENA 259 + G + + A++RL Y HRG+ + L+ R AH +A ++E A Sbjct: 174 LGGRDTVGGAEWRLGYAHRGVMARLCG-LDAPAAVRLAGRAAAGASVAHQSALCRAIEAA 232 Query: 260 MGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILT 319 V + R +L E+ER+ +HL ++ G + + +RE+ M + + Sbjct: 233 SDSMVGTGTERCRVLLAEIERVATHLHDVARTARAAGATALAAECEYLRESVMDLCGRMF 292 Query: 320 GARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLST-------PNMEQR 372 G R L G D + R+V +LV + P +E R Sbjct: 293 GHRLLMDLVRPEGPDGHAGAGDAED-GAAIAAVARQVADLVRGRMRVVGRCRDWPGLEAR 351 Query: 373 TVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLK 432 VG G L AR G RAS D R P GY L ++ + DV +R+ Sbjct: 352 VVGRGVLGEHTARMLGVGGVAGRASAREEDLRRLVP--GYRLGWLDTGVRRAGDVAARID 409 Query: 433 VRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQK 492 +R+ E+ ++ +++ GPL G +G AE PRG +W + Sbjct: 410 LRLAEIGGSVRILESAGA---DGPLPGTGTPPRRDGEGVGCAEGPRGAVWYWVRM-EGGA 465 Query: 493 LYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 + R A+ L ++L G D +I+ S + D Sbjct: 466 VRAAHVRDPALAHVAALEHVLAGADADDVAMIVRSFGLSAAAAD 509 >UniRef50_Q978D6 Formate hydrogenlyase subunit 3 n=1 Tax=Thermoplasma volcanium RepID=Q978D6_THEVO Length = 389 Score = 241 bits (615), Expect = 5e-62, Method: Composition-based stats. Identities = 76/378 (20%), Positives = 135/378 (35%), Gaps = 17/378 (4%) Query: 157 QRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYV 216 + + GP E F GE I D + Sbjct: 23 YEHILSDQRREIPSESYRNLPGEFTFNYGPATGGLIESVAFDFHTPGELIKHVDVYPYIK 82 Query: 217 HRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILL 276 R K+ + + L +R+ G +H+ A+ +VE+A+ I VPE Q R I+L Sbjct: 83 TR---KIKVRGLSPEDALLLVERINGFHAASHAVAFEMAVEDALNIDVPEEVQYSRIIML 139 Query: 277 EVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRD 336 E+ER+ S+L + C GF Q +RE ++ G R + + +GG + + Sbjct: 140 ELERMRSNLEVVKRLCEPAGFGVPQNQIAYLRENIARIITSFAGHRYFFSSSYVGGCQFN 199 Query: 337 LLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRA 396 L + + ++ E + + + LL + R G++ +GP RA Sbjct: 200 GL-----VLESVIEDVKEEFEGIFNDLLQSKIFLNRLQNNGKISSSD-----MLGPAARA 249 Query: 397 SGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGP 456 +G D R D + Y L + D R VR E+ ++ ++I + P Sbjct: 250 AGIEVDARIDEKRLPYSKLGFKPIVFDEPDAFGRFYVRSKEILSSADLISKAIRFSGNSP 309 Query: 457 LMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGN 516 + E+P+GD ++ D K+ + + + N + + GN Sbjct: 310 ---PAKIEKTNGEGAARVESPQGDLFYYVKIND-GKISDVQISSPSLLNIEAFKKSMIGN 365 Query: 517 TVSDAPLIIGSLDPCYSC 534 +D S S Sbjct: 366 IFTDYHFNWESFGIWVSE 383 >UniRef50_UPI000038DF6E Ni,Fe-hydrogenase III large subunit n=1 Tax=Ferroplasma acidarmanus fer1 RepID=UPI000038DF6E Length = 384 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 91/390 (23%), Positives = 150/390 (38%), Gaps = 27/390 (6%) Query: 149 RKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIID 208 R + D T +F ++ + GP E +F L GE I D Sbjct: 16 RSKNYDIYASSIAPAVENTDQFADKNPGEIYF--NYGPSAGGLRESVNFSLLTPGETIRD 73 Query: 209 ADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERA 268 Y R + K+ + +R+ G ++S Y +VE A+GI+ E Sbjct: 74 VIIHPEYKKRDL-KIL--GDPVSRALLKVERINGFHAASNSIGYILAVEEALGIENSE-L 129 Query: 269 QMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLN 328 +R + LE+ER+ S++ + C GF Q +RE ++ G R + +N Sbjct: 130 NDMRIVELELERIRSNIDVIKGMCESAGFAVPEKQLLYLREEVARIISRAFGHRYFFSVN 189 Query: 329 LIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFS 388 G + D + ++ +++ D LLS+ R G + E + Sbjct: 190 GFGTVSGDFST-------IKLNAIEKQFRDIYDGLLSSKIFLDRIQENGIVKNE-----N 237 Query: 389 NVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMID-Y 447 + GP RA+G D R D + Y +E G D SRL VR EV+ A+N+ID Y Sbjct: 238 STGPAARAAGFKFDARKDSKSLDYRN--FTPVTESGADSFSRLVVRSEEVFEAINIIDSY 295 Query: 448 GLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWP 507 G+ N+ E+P GD ++ +N KL + + +Y N Sbjct: 296 GVKNIKT----RTKNELTGSGKGSARIESPAGDIFYYVNI-ENGKLNDIQMVSPSYLNLR 350 Query: 508 TLRYMLRGNTV-SDAPLIIGSLDPCYSCTD 536 R L+ N + +D + S S + Sbjct: 351 LFREALKNNNIFTDFFFVWESFGIWISELE 380 >UniRef50_D2PJN4 Formate hydrogenlyase subunit 5 (HycE) n=10 Tax=Sulfolobaceae RepID=D2PJN4_SULIS Length = 391 Score = 228 bits (583), Expect = 3e-58, Method: Composition-based stats. Identities = 64/351 (18%), Positives = 130/351 (37%), Gaps = 16/351 (4%) Query: 185 GPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGIC 244 GP E F + +GE I+ D + Y +R ++ + + ++ +R+ Sbjct: 52 GPSAGGLLETIKFIITTNGEKILGIDAEV-YKNR---EIVISGLTVDDALLRVERINAPF 107 Query: 245 GFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQF 304 +H+ ++ +VE+++ ++ Q+ R +E+ER+ +HL + T + Sbjct: 108 SASHTISFLLAVEDSLELEQDYPTQLKRIAEIELERIRNHLFVISRLTETTSLNVPTYHL 167 Query: 305 FRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLL 364 + E ++ + G R +G+N I G+ D ++++ + +E +++ D LL Sbjct: 168 LHLVEKVNRLIGKMCGHRYFFGVNAINGVNCDF--GNLLRIID----ITKEFKQIFDGLL 221 Query: 365 STPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQG 424 + R G++ D +++GP RA+G D R D + Y L Q Sbjct: 222 ESRIFIDRLQENGKI-----IDENSIGPAARAAGLTYDARKDFKALPYEDLGFRTVITQE 276 Query: 425 CDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHW 484 D R VR E+ + ++ D + L E+P GD ++ Sbjct: 277 ADSFGRFLVRGMEIIESAKILVELHDEIKNSNNERGKNHKQGGGEGLARVESPSGDLAYY 336 Query: 485 SMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCT 535 N + + N + +D S S Sbjct: 337 VKLN-NGIIDSVSLLTPSQVNLNLFLKSVINTIFTDFQFNWESFGIWVSEI 386 >UniRef50_Q5FU77 Putative uncharacterized protein n=1 Tax=Gluconobacter oxydans RepID=Q5FU77_GLUOX Length = 479 Score = 228 bits (582), Expect = 4e-58, Method: Composition-based stats. Identities = 99/482 (20%), Positives = 159/482 (32%), Gaps = 46/482 (9%) Query: 57 LSVLFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGER 116 L + +D R YVL +E + V + Y + + R A WGER Sbjct: 39 LISCWADDARA--------YVLLLEGDRPLLASRAV----EERRYLAPSSRFAGAEWGER 86 Query: 117 EVRDMYGLIPVGLP-DERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELG 175 D+YG+ + + + W PL P + Sbjct: 87 VAYDLYGVEAMDARGNGAPALDEGGWTSTW-PLSSRPGPAAGGLRPLAGSHLLR------ 139 Query: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235 P P V + + HRG+ R E Sbjct: 140 ----------PEQTGLSGPLELSFEVLKGKVRSVEVCAGGAHRGVVSRLLGRTP-EEAMP 188 Query: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 295 L R+ AH A+ +V A G+ + + +LLE+ER+ HL ++ Sbjct: 189 LVSRMTAGGFVAHPLAFARAVAQARGLVPGPGIRDVWMVLLEIERMSLHLFDMARTARGV 248 Query: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 355 + RE + +R+ + G R L + Q A M+ Sbjct: 249 DAELLATHCDHAREAIARACAEQGVSRRLMDMVACDGFRDGLEIVPLAQAVHAA--MQPR 306 Query: 356 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415 + L ++ R G LD +A F+ G RASG + D R G L Sbjct: 307 LAALEEL---HRVFAPRLDGFAVLDVRLAERFAVGGVTGRASGRSMDMRRRE--AGMRLE 361 Query: 416 PMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHR--FALGF 473 + D +R +R+ E+ +L +++ L G + +E P R +G Sbjct: 362 ALRATGSSQGDARAREGLRLAEIRDSLKLLERIL-----GSIGLEDDEPAPDRTDEGIGV 416 Query: 474 AEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYS 533 AE RGD +W + ++ R + P L MLRG VS P +GS+ + Sbjct: 417 AEGARGDVWYWVRLKE-GRIESLHVRDPGVSLLPVLGAMLRGYPVSRVPAALGSIGISPA 475 Query: 534 CT 535 Sbjct: 476 GI 477 >UniRef50_Q1WLV6 Mitochondrial NADH:ubiquinone oxidoreductase 49kD subunit 7 (Fragment) n=1 Tax=Chlamydomonas incerta RepID=Q1WLV6_CHLIN Length = 277 Score = 224 bits (571), Expect = 7e-57, Method: Composition-based stats. Identities = 53/196 (27%), Positives = 90/196 (45%), Gaps = 1/196 (0%) Query: 179 NNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSD 238 N + GP H + L + GE I+ AD + +HRG EKL E + + + D Sbjct: 83 NFTLNFGPQHPAAHGVLRLVLEMQGEIIMRADPHIGLLHRGTEKLLEYKTYLQGLPYF-D 141 Query: 239 RVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFD 298 R+ + +Y ++E + + VP R Q IR + E+ R+ +HLL + G Sbjct: 142 RLDYVSMMCMEHSYVLAIEQLLNLSVPLRGQYIRVLFSEITRVLNHLLAITCHSMDVGAL 201 Query: 299 SGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQE 358 + F+ F RE + E ++GAR G +GG+ +DL + A+Q + E Sbjct: 202 TPFLWAFEEREKLFEFYERVSGARMHAGYFRVGGVSQDLPIGLLRDVYDWARQFGLRLDE 261 Query: 359 LVDVLLSTPNMEQRTV 374 + ++L ++RTV Sbjct: 262 MEELLTGNRIWKERTV 277 >UniRef50_C4PZT7 NADH-ubiquinone oxidoreductase fe-s protein 2 (Ndufs2), putative n=1 Tax=Schistosoma mansoni RepID=C4PZT7_SCHMA Length = 538 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 85/222 (38%), Gaps = 28/222 (12%) Query: 333 IRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGP 392 IR D + + + + + ++ D+L P RT +G + E A D G Sbjct: 104 IRLDPHIGLLHRGTEKLIEY-KTYTQISDLLFDNPIWITRTKDVGIVSAEDALDLGFSGV 162 Query: 393 MVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNL 452 M+R SG D R P+ Y + +V D R VR+ E+ +L +++ L+ + Sbjct: 163 MLRGSGIKWDLRKTQPYDAYEDMDFDVPVGVHGDCYDRFIVRMEEMRQSLRIMEQCLNKM 222 Query: 453 PGGPLMVEGFT---------------------------YIPHRFALGFAEAPRGDDIHWS 485 P G + V+ +P EAP+G+ + Sbjct: 223 PKGEIKVDDAKICPPKRAEMKSSMEALIHHFKLFSEGYLVPPGSTYTAVEAPKGEFGVYL 282 Query: 486 MTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGS 527 ++ K YR + +A +A+ + + RG + D +I S Sbjct: 283 VSDGTNKPYRCKIKAPGFAHMAAIDKLCRGFMLPDVVAVIVS 324 Score = 79.2 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 1/81 (1%) Query: 150 KDSMDYRQRPAPTTDAETYEFINELGDKKNNV-VPIGPLHVTSDEPGHFRLFVDGENIID 208 K+S+ T + +F N + +V + GP H + + +DGE II Sbjct: 46 KESLYNPAVVKANTTVQPIDFFNVSHQEVQSVHLNFGPQHPAAHGVLRLIMELDGEKIIR 105 Query: 209 ADYRLFYVHRGMEKLAETRMG 229 D + +HRG EKL E + Sbjct: 106 LDPHIGLLHRGTEKLIEYKTY 126 >UniRef50_Q6L0U1 Formate hydrogenlyase subunit 5 n=1 Tax=Picrophilus torridus RepID=Q6L0U1_PICTO Length = 381 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 76/365 (20%), Positives = 143/365 (39%), Gaps = 22/365 (6%) Query: 166 ETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAE 225 + E NE + GPL EP F + GE I +Y +Y ++ + + Sbjct: 30 DDIEHENEKRTDFSFNFSYGPLTGGIPEPFRFDINTSGEKI---NYIKYYNYK-IRNIKL 85 Query: 226 TRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHL 285 + + +R+ G +++ + +SV +A+ I++P +M I +E+ER+ +HL Sbjct: 86 KGINIKDAIPYIERINGNFAASYTICFLSSVMDALEIEIPYELKMYYIIEMELERIRNHL 145 Query: 286 LNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQT 345 L C GF+ ++E ++ +I G R +G+N + R D+ Sbjct: 146 YVLARMCEPAGFNVPANMLMHIKERFSRIIDITFGHRYFFGVNQLKSKRLDIH------- 198 Query: 346 RQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRA 405 ++ + E+ ++ LL++ R GR+ + GP RA+G+ D+R Sbjct: 199 -KMINVYKNEINDIYLNLLNSRLFTDRLQDNGRILDDD-----MTGPAARAAGYKYDSRY 252 Query: 406 DHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYI 465 D Y E+ ++ D +SR VR NE+ ++++I+ + G Sbjct: 253 DFDIFYYNDTGYEIKTDDSGDAMSRFNVRFNEILNSIDIIENAENK--TGDSCYNILD-- 308 Query: 466 PHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLII 525 L E+P GD + N + + A N + G +D Sbjct: 309 GSGTGLTRVESPSGDVAFYVELS-NGVIKDLKIHTALERNMKSFLKSSTGTIFTDFHFNF 367 Query: 526 GSLDP 530 S Sbjct: 368 ESFGL 372 >UniRef50_P19496 Coenzyme F420 hydrogenase subunit alpha n=2 Tax=Methanobacteriaceae RepID=FRHA_METTH Length = 405 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 82/399 (20%), Positives = 153/399 (38%), Gaps = 51/399 (12%) Query: 189 VTSDEPGH--FRLFVDGENII-DADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICG 245 TS + GH + VD E I+ Y RG+EK+ + + R+CG+C Sbjct: 9 PTSRQEGHAELVMEVDDEGIVTKGRYFSITPVRGLEKIVTGKAP-ETAPVIVQRICGVCP 67 Query: 246 FAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTG----FDSGF 301 H+ A ++++++ I+VP+ +++R + L ++SH ++ L Sbjct: 68 IPHTLASVEAIDDSLDIEVPKAGRLLRELTLAAHHVNSHAIHHFLIAPDFVPENLMADAI 127 Query: 302 MQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVD 361 +R+ + + +++ G IGG+ ++ + + +Q++ +V E V+ Sbjct: 128 NSVSEIRKNAQYVVDMVAGEGIHPSDVRIGGMADNITELARKRLYARLKQLKPKVDEHVE 187 Query: 362 VLL---------------------STPNMEQRTV-----GIGRLD------PEIARDFSN 389 +++ S RT + PEIA+ + Sbjct: 188 LMIGLIEDKGLPKGLGVHNQPTLASHQIYGDRTKFDLDRFTEVMPESWYDDPEIAKRACS 247 Query: 390 VGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGL 449 P+ RA + + E+G V+++ R E+ TAL L Sbjct: 248 TIPLYDGRNVEVGPRARM-------VEFQGFKERG--VVAQHVARALEMKTALARAIEIL 298 Query: 450 DNL-PGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPT 508 D L P+ + + +G E PRG D+H + +N K+ + T N PT Sbjct: 299 DELDTSAPVRADFDERGTGKLGVGAIEGPRGLDVHMAQV-ENGKIQFYSALVPTTWNIPT 357 Query: 509 LRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVVDVRKKK 547 + G P +I + DPC SC + VVD + Sbjct: 358 MGPATEGFHHEYGPHVIRAYDPCLSCATHVMVVDDEDRS 396 >UniRef50_Q7G6A6 NAD, putative n=3 Tax=Magnoliophyta RepID=Q7G6A6_ORYSJ Length = 352 Score = 201 bits (511), Expect = 8e-50, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 88/221 (39%), Gaps = 26/221 (11%) Query: 343 IQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARD 402 + + R+ + + P +R G+G + E A ++ GPM+RASG D Sbjct: 132 ERGLRRLLGKRQRLLAYLAKKNRNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWD 191 Query: 403 TRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGP---LMV 459 R + Y +V ++ D ++R VRI E+ ++ +I ++ +PGGP L V Sbjct: 192 LRKVDLYESYNQFDWKVQWQKEGDSLARYLVRIGEMRESIKIIQQAVEKIPGGPYENLEV 251 Query: 460 EGFTYIPHRFA-----------------------LGFAEAPRGDDIHWSMTGDNQKLYRW 496 F + EAP+G+ + + D+ +RW Sbjct: 252 RCFKKAKNSEWNDFEYRFLGKKPSPNFELSKQELYARVEAPKGELGIYLVGDDSLFPWRW 311 Query: 497 RCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + R + N L +++ ++D I+GS+D D Sbjct: 312 KIRPPGFINLQILPQLVKKMKLADIMTILGSIDIIMGEVDH 352 >UniRef50_A5UMA1 Coenzyme F420-reducing hydrogenase, alpha subunit, FrhA n=3 Tax=Methanobrevibacter RepID=A5UMA1_METS3 Length = 405 Score = 201 bits (511), Expect = 8e-50, Method: Composition-based stats. Identities = 78/404 (19%), Positives = 147/404 (36%), Gaps = 61/404 (15%) Query: 189 VTSDEPGH--FRLFVDGENII-DADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICG 245 TS + GH + VD E I+ Y RG+EK+ + L R+CG+C Sbjct: 9 PTSRQEGHAELVMEVDDEGIVTKGRYLSITPVRGLEKMVAGKNP-ETAPVLCQRICGVCP 67 Query: 246 FAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT---------G 296 H+ A ++++++ I+VP+ +++R L +H +N HF Sbjct: 68 IPHTLASVEAIDHSLDIEVPKAGKLLRQATL-----AAHGVNSAAIHHFLIAPDFVPEED 122 Query: 297 FDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREV 356 F + VR+ + ++L G +GG+ R++ + + + ++ Sbjct: 123 FTTAVKSVSAVRKNVQYVVDMLAGEGIHPSDIRVGGMARNITSATKDKLIDRLKAFKPDM 182 Query: 357 QELVDVLLSTPNMEQRTVGIGRL--------------------------------DPEIA 384 ++ V+++ S + G+G + DPEI Sbjct: 183 EKHVELMKSFIAARELPEGLGVVDAPLLASSASYGNLDEFDYDNFSEVLPEAWYDDPEIG 242 Query: 385 RDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNM 444 + P++ RA ++G V+++ R E+ N+ Sbjct: 243 KKACTTIPLINGKNVETGPRARMD-------KFNGFKDKG--VVAQHVARAEEMLNNYNL 293 Query: 445 IDYGLDNL-PGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATY 503 L+ + P + + +G E PRG ++H + D+ K+ + T Sbjct: 294 TIDLLEQIDTSAPARADYDDRGTGKLGIGVIEGPRGTNVHMANVKDS-KIQFYSAIVPTT 352 Query: 504 ANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVVDVRKKK 547 N PT+ G +I + DPC SC + VVD K Sbjct: 353 WNIPTMGPATEGFHHKYGADVIRAYDPCLSCATHVMVVDDEDKS 396 >UniRef50_B8GAR8 NADH-ubiquinone oxidoreductase chain 49kDa n=3 Tax=Chloroflexus RepID=B8GAR8_CHLAD Length = 365 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 96/354 (27%), Positives = 141/354 (39%), Gaps = 17/354 (4%) Query: 186 PLHVTSDEPGHFRLFVDGENIIDADYRLF-----YVHRGMEKLAETRMGYNEVTFLSDRV 240 P+ L V+GE I D +YR Y R L + + +V Sbjct: 9 PVAGAWHSE-QLTLTVEGEYIRDVEYRPATGDGAYAQR----LLQGGG--ESAVRAAAQV 61 Query: 241 CGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG 300 C C AH+ A + ++E I P RAQ IR I+ E+ER SH+ L G +S Sbjct: 62 CPYCSVAHTLALSLALEALAEITAPLRAQAIRVIVAELERAASHMNTLAALIAALGLNSA 121 Query: 301 FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELV 360 + ++ + L G + GG+ + + T + ++ + EL Sbjct: 122 T-RLSQLETRIRSILLALLGHHE-AAYIRPGGLAEPPDEARLADTERAINELLPHMIELA 179 Query: 361 DVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVH 420 + + + R V IG L E AR F GP+ RAS D R D P+ GY +L + Sbjct: 180 EQTIPRRTLVARMVDIGVLTTEAARQFGLAGPLGRASDITTDQRIDAPYAGYTVLTPALV 239 Query: 421 SEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGD 480 EQG DV +R V + E +L + L NLP G + EAPRG Sbjct: 240 VEQGGDVHARAVVLLIEAIESLRLAVRWLHNLPIGETYTAFTLRL--GEGTATVEAPRGP 297 Query: 481 DIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSC 534 + + Q+L A + R +L+ V D LI S DPC +C Sbjct: 298 LRYTVRSDG-QRLTAVEIGIAPQLDRLLARTLLQNAAVDDTLLIAISTDPCTAC 350 >UniRef50_P21301 NADH-ubiquinone oxidoreductase 49 kDa subunit homolog n=3 Tax=Trypanosomatidae RepID=NDUS2_TRYBB Length = 386 Score = 193 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 69/377 (18%), Positives = 129/377 (34%), Gaps = 28/377 (7%) Query: 184 IGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGI 243 GP H + L+ GE I+ D + Y+HRG EKL E + + DR+ + Sbjct: 15 FGPQHPAAHGVLCCLLYFCGEFIVYIDCIIGYLHRGTEKLCEYK-SVEQCLPYFDRLDYV 73 Query: 244 CGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQ 303 + + E + + R +R +++E R + LL + G S + Sbjct: 74 SVCCNEHLLSLCFEYMLRCCLSLRCAFMRLLIVEFTRSFNGLLCISCMVLDLGCLSPLLW 133 Query: 304 FFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVL 363 F R+ M ++ G R ++ GI D + + L + + Sbjct: 134 SFEERDKLMTFFDLCCGCRMHLAFMVLLGILDDFVFGFVDFLLLLIISCLFVMDCYDLLF 193 Query: 364 LSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQ 423 + R G+ D S G + R+ G D R + Y + + Sbjct: 194 VGNRLFYLRLRGLSFFDLYDLVFNSLSGVLSRSLGMVWDCRLFSCYELYFMFCYDYCFCF 253 Query: 424 GCDVISRLKVRINEVYTALNMIDYG------------LDNLPGGPLMVEGFTYI------ 465 D RL +R+ ++ +L + L + + +E + Sbjct: 254 IGDAFDRLFLRLFDMRMSLLICKQCFFVGFFVFGFVCLFDYLYCDITIETIIMLFYSLWC 313 Query: 466 --PHRFALGFAEAPRGD---DIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSD 520 + E P+G+ + + + R R R A + + L LRG + D Sbjct: 314 CCLPGISFACVEHPKGEYCLLLCFCV----GLCSRLRLRCADFLHICLLDVCLRGFLLHD 369 Query: 521 APLIIGSLDPCYSCTDR 537 ++G++D + DR Sbjct: 370 LVAVLGNIDVVFGSVDR 386 >UniRef50_Q00390 Coenzyme F420 hydrogenase subunit alpha n=9 Tax=Euryarchaeota RepID=FRHA_METVO Length = 398 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 81/396 (20%), Positives = 149/396 (37%), Gaps = 51/396 (12%) Query: 189 VTSDEPGH--FRLFVDGENII-DADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICG 245 T+ GH L VD + I+ +Y RG EK + R CGIC Sbjct: 9 PTTRHEGHTKLVLKVDDDGIVEKGNYLSVTPVRGFEKFLVGK-PAEFAPIAVSRFCGICP 67 Query: 246 FAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLN-LGLACHFTGFDSGFMQF 304 AH+T+ ++E+A GI P+ ++R + ++HSH L+ +A F Sbjct: 68 IAHATSAVEAIEDACGIVPPKDGLLLRELTGLGNKMHSHPLHEFLIAPDFIPEKDRVEYI 127 Query: 305 FRV---RETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVD 361 R+ R+T + + + G +GG+ + + + + ++ + +E V+ Sbjct: 128 TRIQQMRKTGQYIVDTIGGEAIHAPNIKVGGMLKSITPSAVSKIYYKCKEFEKLAKEQVE 187 Query: 362 VLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGH----ARDTRADHPFVGYGLLPM 417 L+ P E RT+ G PE + + G + S + + + H + Y + Sbjct: 188 YLI--PIFENRTLVDGTEIPEK-LGYHDFGYLATDSTYGNRENIEQKKVHEYTPYDVYEK 244 Query: 418 EVHSEQGCDVISRLKVRINEV-------------------------YTALNMIDYGLDNL 452 EV Q C + R+ EV Y + + ++ + Sbjct: 245 EVAV-QACQLFQEYNGRLMEVGPRARFAKFHDFKEKGAMAIHIARAYENVIHVKRAMEII 303 Query: 453 PGGPLMVEGFTYIPH-------RFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYAN 505 L V+G T + LG EA RG + H + + ++ + AT N Sbjct: 304 EE--LNVDGLTRAKDPILGDGEKLGLGVHEAARGHNTHQASIDEKGRITYYNAIVATTWN 361 Query: 506 WPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVV 541 P + + + A ++ + DPC SC + ++ Sbjct: 362 IPLIGKAVEAHY-KFAEHVVRAYDPCVSCATQHDIL 396 >UniRef50_P80489 Coenzyme F420 hydrogenase subunit alpha n=11 Tax=Methanomicrobia RepID=FRHA_METBF Length = 456 Score = 183 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 99/441 (22%), Positives = 166/441 (37%), Gaps = 85/441 (19%) Query: 189 VTSDEPGH--FRLFVDGENII-DADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICG 245 T+ GH L VD + I+ D+ RG+EKLA + +V ++ RVCGIC Sbjct: 9 PTTRLEGHSKLTLKVDDQGIVERGDWLSITPVRGIEKLAIGKT-MEQVPKIASRVCGICP 67 Query: 246 FAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLN----------------LG 289 AH+ A T ++E ++G ++P A+++R IL R+HS L+ Sbjct: 68 IAHTLASTEAMEASIGCEIPTDAKLLRTILHAANRIHSIALHNILILPDFYIPGTEKKFN 127 Query: 290 LACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLA 349 L + S + R+RE + + I G IGG+ ++ + LA Sbjct: 128 LFANEQPARSVMARIVRIREIAQTIGAIAGGEAIHPSNPRIGGMYYNVSPRAKQKMADLA 187 Query: 350 QQ----MRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRA 405 ++ + +++ + DV+ + N E V ++ + N G M AS + + Sbjct: 188 KEGLVLVHEQMEFMFDVIRNMQNREFVEVAGKQIPLPKKLGYHNQGVMATASMYGSSSLD 247 Query: 406 DHP---------------FVG-----------------------------------YGLL 415 D+P ++G Y Sbjct: 248 DNPTWDFTRWKETRPWDWYMGEVTIDLEDPSYPIGGTTKIGTKANPQMEACTGVPTYDGQ 307 Query: 416 PMEV------HSEQGCD---VISRLKVRINEVYTALNMIDYGLDNL-PGGPLMVEGFTYI 465 P+EV + + D ++ R E I LDNL G ++ + Sbjct: 308 PVEVGPRARLATFKNFDEKGTFAQHIARQMEYPDCCYTILRCLDNLNTSGKVLADHIPQG 367 Query: 466 PHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLII 525 EAPRG +IH + D + L+ + T N+PT L G A +++ Sbjct: 368 DGSMGWAANEAPRGSNIHLARVKDGKVLW-YDMLVPTTWNFPTCSRALTGAPWQIAEMVV 426 Query: 526 GSLDPCYSCTDRMTVVDVRKK 546 + DPC SC M VV+ +K Sbjct: 427 RAYDPCVSCATHMIVVNEEEK 447 >UniRef50_D1ICJ9 Whole genome shotgun sequence of line PN40024, scaffold_246.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D1ICJ9_VITVI Length = 765 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 50/242 (20%), Positives = 91/242 (37%), Gaps = 14/242 (5%) Query: 242 GICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGF 301 + A A++++VE + +VP RAQ IR + E+ R+ +H L L G + Sbjct: 51 YVSTMAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRISNHSLALTTHAMDVGASTPS 110 Query: 302 MQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKD--DMIQTRQLAQQMRREVQEL 359 + RE ++ E ++GAR GG+ +DL + T +A ++ Sbjct: 111 LWASEEREKLLEFYERVSGARMHASFIRPGGVAQDLPLGLCHVTCTELVADWAFSLIKAD 170 Query: 360 VDVLLSTPNMEQR--------TVGIGRLDPEIARDF-SNVGPMVRASGHARDTRADHPFV 410 L + + R +G G + G R D+R P+ Sbjct: 171 PLAFLLSKSRSNRACPSPYPLCLGAGSAQERPVLWWYGRHGLRER---VCWDSRRAAPYD 227 Query: 411 GYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFA 470 + +V D R +RI E+ ++ +I + +P G + + P + Sbjct: 228 VHDQSDPDVPVGTRGDRYDRYCIRIEEMRQSVRIIVQCPNQMPSGMIKADDRKLCPPSRS 287 Query: 471 LG 472 LG Sbjct: 288 LG 289 Score = 81.9 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 33/73 (45%) Query: 465 IPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLI 524 +P EAP+G+ + ++ + + YR + RA A+ L M + + +D I Sbjct: 693 VPAPSTYTAVEAPKGEIGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSMSKHHMPADVVTI 752 Query: 525 IGSLDPCYSCTDR 537 IG+ D DR Sbjct: 753 IGTQDIVSGEVDR 765 >UniRef50_B6YTV8 Coenzyme F420 hydrogenase alpha subunit n=1 Tax=Thermococcus onnurineus NA1 RepID=B6YTV8_THEON Length = 392 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 73/362 (20%), Positives = 135/362 (37%), Gaps = 48/362 (13%) Query: 218 RGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLE 277 RG EKL + V + R+CG+C +H A + ++ENA+GI P ++R L Sbjct: 39 RGFEKLVVGKNPLFAVEAVM-RICGLCHASHGIAMSEAIENAIGIIPPRNGILMREALGL 97 Query: 278 VERLHSHLLNLGLACHFT----GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGI 333 V R+ SH+L + + Q + GA +GG+ Sbjct: 98 VNRIQSHMLEFLMVAGDLLIEEKREEVLFQLMDFHAKISDYLLKMGGAATHPPNLTVGGM 157 Query: 334 --------------------------RRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTP 367 L +D+ ++A ++R + E ++ S Sbjct: 158 FSVPKWSVFNNLKARLPKLTGQWEEIAHLLTDEDIQT--EVADELREKKAENNYLVSSLF 215 Query: 368 NMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLP------MEVHS 421 ++ + R++ ++ P H++++ F G + M+V+ Sbjct: 216 YGDRFNINAERIETMPYYEYRKDNP------HSKESTTLIAFYGGEKVEAGPRARMKVYR 269 Query: 422 E-QGCDVISRLKVRINEVYTALNMIDYGLDNLP-GGPLMVEGFTYIPHRFALGFAEAPRG 479 E + R+ + AL ++ LD++ P + + P + +G EAPRG Sbjct: 270 EFTDSSLYGLHTARVQDTTLALIRLEEILDSIKMDEPFRTKNIVFGPGK-GVGVYEAPRG 328 Query: 480 DDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMT 539 IH GD ++ + T N P + M +G +V A ++ DPC CT + Sbjct: 329 TLIHLIELGDEGRVVSSKIIVPTMFNIPVMEEMAKGLSVKAAEAVMRLYDPCIPCTTHVV 388 Query: 540 VV 541 + Sbjct: 389 RL 390 >UniRef50_UPI0001985C72 PREDICTED: similar to NADH dehydrogenase subunit 7 n=1 Tax=Vitis vinifera RepID=UPI0001985C72 Length = 238 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 69/155 (44%) Query: 242 GICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGF 301 + A A++++VE + +VP RAQ IR + E+ R+ +H L L G + Sbjct: 81 YVSTMAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRISNHSLALTTHAMDVGASTPS 140 Query: 302 MQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVD 361 + RE ++ E ++GAR GG+ +DL QQ + EL + Sbjct: 141 LWASEEREKLLEFYERVSGARMHASFIRPGGVAQDLPLGLCRDIDSSTQQFASRIDELEE 200 Query: 362 VLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRA 396 + +QR V IG + + A+D+ G M+R Sbjct: 201 MSTGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRG 235 >UniRef50_B5I9E7 Ni Fe-hydrogenase III large subunit-like protein n=2 Tax=Aciduliprofundum boonei T469 RepID=B5I9E7_9EURY Length = 412 Score = 164 bits (416), Expect = 8e-39, Method: Composition-based stats. Identities = 65/344 (18%), Positives = 116/344 (33%), Gaps = 30/344 (8%) Query: 197 FRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSV 256 F++ GE I L + R M A + + E +R+ G ++++ + V Sbjct: 89 FKIATCGERIDSLVPYLGFKKREMLNKAIGKEPW-EALPYVERITGQFSISYASLFYGLV 147 Query: 257 ENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAE 316 GI P+ + E+ER+H+H+ + M + E +++ Sbjct: 148 ---FGIDCPD---YL-LFAKELERVHNHIWVMHKLAGDASQKVANMHLAAITEEFLRLNL 200 Query: 317 ILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGI 376 G R G + + ++++ E + L + R Sbjct: 201 KTLGHRYGMNFLRTG-------PRKYDKFHENLSELKKWFLETAEELSDSRIFIDRLQTT 253 Query: 377 GRLDPEIARDFSNVGPMVRASGHARDTRA----DHPFVGYGLLPMEVHSEQGCDVISRLK 432 L VG RASG RD R + Y E D +SR Sbjct: 254 CILKKLDILRNDGVGIPARASGVLRDARKIGIFKDLYGDYS-----PPMESYGDSLSRFL 308 Query: 433 VRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQK 492 +R+ EV + +++ L + F G AEAP GD I+ + + + Sbjct: 309 IRVKEVEKSFEILESI--ELKECKVKRNAKK---DGFYEGMAEAPPGD-IYMGVKIEKGR 362 Query: 493 LYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 + R + + +RGN +D P + S +S D Sbjct: 363 VREIIIRPPSLVMYHAFSVGIRGNVFTDFPFALDSFGAYFSDAD 406 >UniRef50_Q60338 Coenzyme F420 hydrogenase subunit alpha n=15 Tax=Euryarchaeota RepID=FRHA_METJA Length = 415 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 83/405 (20%), Positives = 143/405 (35%), Gaps = 57/405 (14%) Query: 189 VTSDEPGH--FRLFVDGENIIDADYRLFYVH-RGMEKLAETRMGYNEVTFLSDRVCGICG 245 T+ GH L VD E I++ Y L RG E + + + R+CGIC Sbjct: 14 PTTRHEGHAKLILEVDEEGIVNKAYYLNTTPVRGFETMLKGK-PAEFAPIAVMRICGICQ 72 Query: 246 FAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG----- 300 H A ++ENA+ +VP+ ++R ++ RLHSH L+ L F Sbjct: 73 TTHGIASCEAIENAIDCEVPDDGLLLRELVGIGNRLHSHPLHHLLTIDD--FLKPDETDL 130 Query: 301 ----FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREV 356 R+R+ + +I+ G +IGG+R ++ + + +Q ++ Sbjct: 131 KIELIKLIQRMRKVGQLVVDIVGGEGIHPPNIVIGGMRTNITERAKSRLYYALRQYEKDA 190 Query: 357 QELVDVLLSTPNMEQR-TVGIGRLDPEIARDFSNVGPMVRASGHA-------RDTRADHP 408 EL + + +R IG + A ++ + + + D Sbjct: 191 YELYEKYTE---LIERYLEEIG-IPDLGAHEY---PYIATHTTYGDRYAINWDDVTEIPA 243 Query: 409 FVGYGLLPMEVHS--------------------------EQGCDVISRLKVRINEVYTAL 442 Y + + +G + R E A+ Sbjct: 244 QRYYDDEEAKQTTTIQIPLYAGVPAEGGPRARMVKFGNFREGGSAMDINIARAQENLGAV 303 Query: 443 NMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAAT 502 LD L Y F +G EAPR + H + G + K+ +R AA+ Sbjct: 304 YRALEILDELDLNGKTRAEVEY-KDGFGIGVHEAPRATNTHMAEVGKDGKIKSYRIIAAS 362 Query: 503 YANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVVDVRKKK 547 N+P + + G A +I+ + D C SC + V D K+ Sbjct: 363 TWNFPIVEKAIEGYPQQYAEVIMRAYDICASCATHVIVKDEETKE 407 >UniRef50_A6DBU3 Nickel-dependent hydrogenase, large subunit n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DBU3_9PROT Length = 386 Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 70/372 (18%), Positives = 146/372 (39%), Gaps = 46/372 (12%) Query: 204 ENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQ 263 + IID F+ +RG+E+ R + + ++ R+CGICG AH A ++ENA+ ++ Sbjct: 23 DGIIDFVEIFFWQYRGIEQYLVNRH-FLDALVINPRICGICGHAHLLATAKAIENALNLK 81 Query: 264 VPERAQMIRAILLEVERLHSHLLNLGLACHFTGF--DSGFMQFFRVRETSMKMAEILTGA 321 + ++A+++R I +E + +H+ L + T S ++ + + K+ I+ G Sbjct: 82 ITKKAEILRDITSGLEIIQNHIKWFYLTLYPTQIKDKSYILKALNIVKKISKIIAIIGGQ 141 Query: 322 RKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDP 381 + GG+ DL D+I+ + L +++R ++ ++D + ++E+ L Sbjct: 142 FPHNSYIIPGGVTCDLTNLDIIKIKNLLKKLREDIYTIIDENGKSHDLEKFFEN---LPK 198 Query: 382 EIARDFS---NVG------PMVRASGHA--------RDTRADHPFVGYGLL-------PM 417 I + + +G P + ++ + + G L + Sbjct: 199 NIGKSLNKFLVLGDNLFFKPNGTFTNVKEFSNNSFFKNVLYNEEYYEVGPLARNLQNKTI 258 Query: 418 EVHSEQGCDV-ISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGF---TYIPHRFALGF 473 E+ D +R+ R+ E+ L +I+Y + + + + F + Sbjct: 259 NTIYEKYQDSIYTRIFARLYEI---LLIINYLIKEIEDLDITQKSFLNYKKRTCGSGVSV 315 Query: 474 AEAPRGDDIHWSMTGDNQKLYRWRCRAATYANW--------PTLRYMLRGNTVSDAPLII 525 EAPRG IH +N+K+ + + + L + I Sbjct: 316 IEAPRGSLIHKIKI-ENEKIKFYDIVMPSQFYLSNGTKEKPSASQMALIREEIKFIDTIF 374 Query: 526 GSLDPCYSCTDR 537 D C C Sbjct: 375 KCFDICAVCVTH 386 >UniRef50_C5A2R8 Coenzyme F420 hydrogenase subunit alpha (FrhA) n=1 Tax=Thermococcus gammatolerans EJ3 RepID=C5A2R8_THEGJ Length = 393 Score = 161 bits (407), Expect = 8e-38, Method: Composition-based stats. Identities = 81/398 (20%), Positives = 142/398 (35%), Gaps = 71/398 (17%) Query: 193 EPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAY 252 L+ + + DA + RG EK+ + V + R+CG+C +H A Sbjct: 17 GEAKLILYEEDGVVQDALFIATAPVRGFEKMVVGKNPLFAVEAVM-RICGLCHASHGIAA 75 Query: 253 TTSVENAMGIQVPERAQMIRAILLEVERLHSH-LLNLGLACHFTGFDSGFMQFFRVRETS 311 + ++E+A+G+ P +++R L + R SH LL L +A + F++ + Sbjct: 76 SEAIEHAIGVTPPRNGRLMREALGLINRAQSHALLFLMVAGDLIKEEKRNDVLFKLMDFH 135 Query: 312 MKMAE---ILTGARKTYGLNLIGGIR---------------RDLLKDDMIQTRQLAQQ-- 351 K+++ L GA IGG+ +DL L + Sbjct: 136 AKISDYLLKLGGAATHPPNLTIGGMLSVPKWSVFNNLKARFKDLTASWEAAEELLIDEDI 195 Query: 352 ---MRREVQELV--------------------DVLLSTPNMEQRTVGIGRLDPEIARDFS 388 + E++E D + S P E R R + + Sbjct: 196 QTEIADELREAKRPFKYLASGFFYGDRYNIEWDKVSSVPYYEFRKEEAARESTTLVSFYD 255 Query: 389 N----VGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNM 444 GP R + R+ R + + + RI + A+ Sbjct: 256 GEKVETGPRARMITY-REFRDESLYGLH-------------------LARIEDTRLAIQR 295 Query: 445 IDYGLDNLP-GGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATY 503 + LD + P T+ P + +G EAPRG IH+ G+ ++ + R T Sbjct: 296 LGEILDEIRIEEPFRTGDITFRPGK-GVGVYEAPRGTLIHYVELGEEGRVLKSRIVVPTM 354 Query: 504 ANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVV 541 N P + M +G +V A ++ DPC CT + + Sbjct: 355 FNIPVMEEMAKGLSVKAAEAVMRLYDPCIPCTTHVVRL 392 >UniRef50_B5IEA3 Nickel-dependent hydrogenase superfamily n=3 Tax=Aciduliprofundum boonei T469 RepID=B5IEA3_9EURY Length = 421 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 80/413 (19%), Positives = 155/413 (37%), Gaps = 68/413 (16%) Query: 191 SDEPGHFRLFVDGENIIDADYRLFYVH---RGMEKLAETRMGYNEVTFLSDRVCGICGFA 247 + + + ++ EN+ +F VH R E + Y + L+ R+CGIC A Sbjct: 14 IEGHANLTIEIEDENLKRV---IFGVHEGSRYFEAFMVGK-SYKYLPELAGRICGICTVA 69 Query: 248 HSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLAC------------HFT 295 H A +VE+A+GI++ E + +R ++L + SH+L+L Sbjct: 70 HEIASVRAVEDALGIEISEEVEDLRKLMLISSHIQSHILHLYFLALPDYRNVESIIELAN 129 Query: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 355 + + F ++E S M E++ G + G + + + K+ + + + +++ Sbjct: 130 KNVNLVKKAFELKEASNYMTELIGGRAVQPCTIVPGKVSKRIGKETIERYIKKMKEIYPF 189 Query: 356 VQELVDVLLST--PNMEQRTVGIGRLD--------PEIARDFSNVGP----------MVR 395 + + ++ LS P E+ + + D EIA S P +V Sbjct: 190 LLDTAELFLSLEYPKYERESEYVALWDGHSIPLYKGEIATLSSIFDPHQYQEHIREWVVE 249 Query: 396 ASGHARDTRADHPFVGYGLLPMEVH---SEQGCDVISRLKVR-------INEVYTALNMI 445 S ++ L + ++ E+ ++ R VR + AL + Sbjct: 250 YSSAKHSLIEGRDYMVGALARLNINRNLREEARELAERYGVRFPSNRIAWINLAQALENV 309 Query: 446 DYGLDNLPGGPLMVEGFTYIPH-----RFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRA 500 + L+ + + E + + +G EAPRG IH + + Y Sbjct: 310 HFALEAMEIAENLKEYDPHKINIPRVSGEGVGVIEAPRGLLIHHYKIKNGKCTY-VNIIT 368 Query: 501 ATYANWPTLRYMLRGNTVSDAPL------------IIGSLDPCYSCTDRMTVV 541 T N + +L+G +S II + DPC SC+ +T + Sbjct: 369 PTAMNTENIERILKG-YISQIVSKNDEYIKMEAEKIIRAYDPCISCSVHVTRI 420 >UniRef50_Q3AU04 Hydrogenase/sulfur reductase, alpha subunit n=10 Tax=Chlorobiaceae RepID=Q3AU04_CHLCH Length = 426 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 93/436 (21%), Positives = 151/436 (34%), Gaps = 88/436 (20%) Query: 177 KKNNVVPIGPLHVTSDEPGHFRLFV---DGENIIDADYRLFYVHRGMEKLAETRMGYNEV 233 ++N + I H+T E GH + + +GE + +A + + R E + + M + Sbjct: 4 ERNLDINI--HHLTRVE-GHANIHIHVKNGELV-EAQWAIIETPRFFEVMLKG-MSAEQA 58 Query: 234 TFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLAC- 292 FL+ R+CGIC +HS A ++E AM I P A+++R + + E L SH L+L Sbjct: 59 PFLTSRICGICSISHSLANIRALERAMQITPPPLAEVVRRLAMHGETLQSHALHLFFLAV 118 Query: 293 -HFTGFDSGF----------MQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDD 341 F G S +++E ++ G ++GGI + Sbjct: 119 PDFAGLPSVLPLMESHPQVVRAGLQLKELGNSISIAAAGRATHPVSLVLGGITKAPELQQ 178 Query: 342 MIQTRQLAQQMRREVQELVDVL--LSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGH 399 + + + Q+ + + + V L PN + T I + G +V + G Sbjct: 179 LKELLTMTQERKLALAQAVTFFEELHIPNFTRETEFISLCNGVTYPAIG--GQLVSSDGI 236 Query: 400 ARDTRADHPFVGYGLLPMEVHSEQGCDVISRL---------KVRINEVYTALN------M 444 RD Y L+ E + +RL R N Y L+ Sbjct: 237 TRDE------NDYLLMTNEYTRDFSTSKFTRLSRNSSAAGALARFNNNYHLLHPNAQAVA 290 Query: 445 IDYGLDNLPGGPLM------------------------------VEGFTYIPHRFALGFA 474 +GL + P M + A G Sbjct: 291 ARFGLQPVCHNPFMNNIAQLVECVHILEDAEELIGMVMDMKGEETKCHYTPQAGAATGAV 350 Query: 475 EAPRGDDIHWSMTGDNQKLYRWRCRAATYAN-------WPTL-RYMLR-----GNTVSDA 521 EAPRG H+ T D + R C T N L +LR G Sbjct: 351 EAPRGILYHYMETNDEGMVVRADCIIPTTQNNGNIYDDLQALAAELLREGKCDGEIQLQC 410 Query: 522 PLIIGSLDPCYSCTDR 537 +++ S DPC SC+ Sbjct: 411 EMLVRSYDPCISCSVH 426 >UniRef50_B9L8N1 Nickel-dependent hydrogenase, large subunit n=1 Tax=Nautilia profundicola AmH RepID=B9L8N1_NAUPA Length = 387 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 69/396 (17%), Positives = 141/396 (35%), Gaps = 72/396 (18%) Query: 194 PGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYT 253 G L ++G+ ID F+ + G+E+ + + Y + ++ RVCGICG +H A Sbjct: 12 EGEATLKIEGDKKIDFVQIEFWQYHGIEEYLKNKN-YMDALVINPRVCGICGHSHLHATV 70 Query: 254 TSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG--FMQFFRVRETS 311 +E ++ ++AQ+ R + +E + +H+ + + T + + Sbjct: 71 KVIEKVFKAKISKKAQIFREVTSLLEIVENHIKWFYITIYPTQIKDKEYLFKAVKFSSKI 130 Query: 312 MKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE-VQELVDVLLSTPNME 370 K IL G + GG+ D ++++ + L ++++ E ++E++D L++ ++E Sbjct: 131 SKAIAILAGQFPHNSYMVPGGVTCDPTYMEIMRLKDLIKEIKEEYIKEIMDENLTSHDLE 190 Query: 371 QRTVGIGRLDPEIARDFSN---------------------------------------VG 391 + L +I + + VG Sbjct: 191 RFFEN---LPKDIGKSLNKFLVLGESNIFKSNGDYKNVKEERNKSLSKNALYNNEYYEVG 247 Query: 392 PMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDN 451 P+ R + + Y + +R+ RI E L+ I+ L Sbjct: 248 PLARMIINKNKN-IKKIYDIYSD-----------SIYTRMCARIYEPLLLLDYIEQKLSE 295 Query: 452 --LPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPT- 508 L + + A+ EAPRG IH ++ N+K+ + T N + Sbjct: 296 VDLCEPSFLKPNVR---NGKAIVAVEAPRGSLIH-EISIKNEKIDYYNIVVPTQFNLASS 351 Query: 509 -------LRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + L ++ + D C C Sbjct: 352 TKENPSPAQAALMNEDIAYVDSVFRCFDICAVCMSH 387 >UniRef50_O66988 Hydrogenase large subunit n=1 Tax=Aquifex aeolicus RepID=O66988_AQUAE Length = 416 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 78/418 (18%), Positives = 151/418 (36%), Gaps = 83/418 (19%) Query: 191 SDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHST 250 + L + I DA FY RG+EK+ R + + ++ R+CGICG AH Sbjct: 11 VEGEASLNLVWERGVIKDAKIS-FYSTRGIEKVLRER-PFMDALVINPRICGICGHAHLI 68 Query: 251 AYTTSVENAMGI-QVPERAQMIRAILLEVERLHSHLLNLGL--ACHFTGFDSGFMQFFRV 307 A ++ENA+GI ++PE+A++ R + E + +H+ L F F QF Sbjct: 69 ATVRAIENAIGIKEIPEKAKITRLVTQITEMVQNHVKWFYLFVMPDFLKFKESLSQFEPF 128 Query: 308 RET-----------SMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQ----M 352 + +K+ + G + GGI + + ++++ L ++ Sbjct: 129 KGERWKRAVQFSSQIVKIIALFGGQWPHSSYAVPGGITSNFSEREVLKALNLVKEGKTFF 188 Query: 353 RREVQELVDVLLS---------------------------TPNMEQRTVGIGR------- 378 + V E +++ L+ P+ + G G+ Sbjct: 189 EKNVSEDLELFLNLCEEFNLLSIGKAYNRFLSGGGLAYCFNPSYK---KGKGKVCKFNVR 245 Query: 379 -LDPEIARDFSNVGPMVRASGHARDTRADHPFV--GYGLLPMEVHSEQG-CDVIS-RLKV 433 + A D+S P+ R G + P P+ + + D + R+ Sbjct: 246 YVQELEAADYSKANPV-RYKGLPYE---TGPLARELISKNPLVLKLYKNYGDSYAVRVAA 301 Query: 434 RINEVYT----ALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGD 489 R+ E+ ++ +++L + E + G EA RG IH + + Sbjct: 302 RLAEIKDLLEILEKLLKELMNHLEEPSCLWEDRSD-ESGEGFGVVEAARGTLIHRVVI-E 359 Query: 490 NQKLYRWRCRAATYAN--------WPTLRYMLRG--NTVSDAPLIIGSLDPCYSCTDR 537 K+ ++ + N + G + + A +++ S D C CT + Sbjct: 360 KGKIKDYKVITPSQWNLGPRCKKYLGVAEKAIVGLDSELK-AQMVLRSFDLCSVCTTK 416 >UniRef50_Q1PWG9 NADH-quinone oxidoreductase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PWG9_9BACT Length = 166 Score = 151 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 45/148 (30%), Positives = 80/148 (54%), Gaps = 9/148 (6%) Query: 10 YLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQ---GGWLSVLFGNDER 66 + + FP + D + + +LT +K ++ +V EF + +LS + G D+ Sbjct: 6 IITLVKSHFPEAITDC-YDFRGELTFVIKKEHIMQVAEFFKKNEELECDYLSDVCGVDKI 64 Query: 67 KLNGHY-AVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLI 125 + NG + VY++ SM+K + + ++V V ++ P +VT A W ERE DM+G+ Sbjct: 65 ETNGVFEVVYHLYSMQKKHR--VRLKVPVPSDNPTISTVTHIWKTANWHERETYDMFGIQ 122 Query: 126 PVGLPDERRLVLPDDWPDELYPLRKDSM 153 G PD R++++P+D+ E +PLRKD Sbjct: 123 FQGHPDLRKILMPEDF--EGHPLRKDYP 148 >UniRef50_A3Q228 Nickel-dependent hydrogenase, large subunit n=7 Tax=Bacteria RepID=A3Q228_MYCSJ Length = 430 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 83/424 (19%), Positives = 142/424 (33%), Gaps = 77/424 (18%) Query: 191 SDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHST 250 + G + + + + ++ R E R Y E ++ RVCGIC A+ Sbjct: 16 VEGEGALHVTLTDGVVESVELNIYEPPRFFEAFLRGR-AYTEPPDITARVCGICPVAYQV 74 Query: 251 AYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLA--CHFTGFDSGFMQFFRVR 308 + ++E+A G+ + +R +L E +HSH L++ L F G+ R Sbjct: 75 SACNAIEDACGVTLDPELIELRRLLYCGEWIHSHALHIYLLHAPDFLGYPDAISFAKDHR 134 Query: 309 ETS----------MKMAEILTGARKTYGLNLIGGI----RRDLLKDDMIQTRQLAQQMRR 354 E ++ E + G +GG RRD L + R+ Sbjct: 135 EFLERGLALKKAGNRLMEQIGGRAIHPINVRLGGFYSVPRRDELGPLAEELRRALDDALF 194 Query: 355 EVQELVDVLLSTPNMEQRTVGIGRLDPE--------IARDFSNVGPMVRASGHARDTRAD 406 ++ + + P++E + P+ I R P+ S H R+ + Sbjct: 195 TLRSVAE--FDFPDVEFDHEFLALTQPDRYAIEDGAIVRSAGPAFPVADFSEHVREMQVP 252 Query: 407 HPFVGYGLLPMEVHSEQGCDVISRL-------------------------------KVRI 435 H + L E + ++R VR Sbjct: 253 HSTALHATLDGERYLTGP---LARYSLSSAALSPTARQAAAQAGLGAQCRNPFRSIVVRA 309 Query: 436 NEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFAL--GFAEAPRGDDIHWSMTGDNQKL 493 EV + I+ L + F +P R + G +EAPRG H GD+ + Sbjct: 310 VEV---VYAIEEALRIIEDYERPARPFVDVPARAGVGHGVSEAPRGLLYHRYEIGDDGLV 366 Query: 494 YRWRCRAATYANWPTLRY----MLRGNT-VSDAP---LIIGSL---DPCYSCTDRMTVVD 542 T N + Y ++ GN + DA L S+ DPC SC+ + Sbjct: 367 SAATMVPPTAQNQAAIEYEMGRLVAGNLTLDDAELTSLCERSIRNHDPCISCSAHFLTLT 426 Query: 543 VRKK 546 V + Sbjct: 427 VERG 430 >UniRef50_B1L3Q0 Coenzyme F420-reducing hydrogenase, alpha subunit n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L3Q0_KORCO Length = 427 Score = 151 bits (381), Expect = 9e-35, Method: Composition-based stats. Identities = 87/427 (20%), Positives = 149/427 (34%), Gaps = 81/427 (18%) Query: 189 VTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAH 248 + G + V+G+ + A R++ R E++ + Y EV ++ R+C IC + Sbjct: 10 ARVEGHGDIEVVVEGDAVKRAVLRIYEGPRFFERILIGKSYY-EVPDITARICSICPDPY 68 Query: 249 STAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLAC--HFTGFDSGF----- 301 A + ++E AMGI+V + + +R + L + +HSH L+L F G+ Sbjct: 69 QVASSRAIEKAMGIRVDRQVEALRELQLISDVIHSHALHLFFLALPDFLGYKDAIGMAAQ 128 Query: 302 -----MQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREV 356 +V+ + E++TG + GG + +D+ + R+ + Sbjct: 129 YPETVKLALKVKRAGNAIKEVITGRTVHGVVTKPGGYTKVPRAEDLERLRKQLESSIDGA 188 Query: 357 QELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVG-PMVRASGHARDTRADHPFVGYGLL 415 +E + V S E + + + G ++ + G HP Y L Sbjct: 189 REAIRVFSSLKMPEYSLDDNLYIAVDPGEHYGYSGEYLLVSDG------TRHPVEKYMDL 242 Query: 416 PMEVHSEQG--------CDVI-----SRLKV---RIN----EVYTALN------------ 443 EV E +RL + R+ E Y +L Sbjct: 243 TNEVTVEHSSAKHSSYKGSSFMTGALARLLLNEKRLYGEAKESYESLRDKIDPRNPFSNN 302 Query: 444 ----------------MIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMT 487 +ID LD LMVE + EAPRG H Sbjct: 303 MAQAIELLYSVQRAMDIIDGLLDEGIKDKLMVEVKPR--AGEGIAVVEAPRGLLYHHYKL 360 Query: 488 GDNQKLYRWRCRAATYANWPTLRYMLRGNT-----VSD------APLIIGSLDPCYSCTD 536 DN K+ T N + LR +SD +++ + DPC SC+ Sbjct: 361 DDNGKVVFANLVTPTAQNAANMDKYLRIAVRNLKDLSDDELKLKLEMLVRAYDPCISCSV 420 Query: 537 RMTVVDV 543 +T + V Sbjct: 421 HLTRIGV 427 >UniRef50_Q2LYD7 Nickel-dependent hydrogenase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LYD7_SYNAS Length = 441 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 72/423 (17%), Positives = 149/423 (35%), Gaps = 77/423 (18%) Query: 191 SDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHST 250 + G+ + V I ++++ R E + R + E ++ R+CGIC HS Sbjct: 16 VEGHGNIVIDVKEGKIDKCEFQVVESPRLFEGMLRGRSIF-EAQHITSRICGICSCGHSL 74 Query: 251 AYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLAC--HFTG----------FD 298 A + E+A+G+ E+ +R +LL+ E L SH+L++ L G + Sbjct: 75 ASIQAAEDALGVTPTEQTIKLRKLLLDYEFLDSHVLHVYLLAAPDVLGVPSFVPLVKTHN 134 Query: 299 SGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQE 358 + + R+++ + +IL G ++GG + D+ ++ + MR ++ E Sbjct: 135 AVVRRALRMKKLCNDVCDILVGRHVHPISAIVGGFTKLPRPKDLDAMLEMLESMRDDMAE 194 Query: 359 LVDVL--LSTPNMEQRTVGIGRLDPEIARDF--SNVGPM----------VRASGHARDTR 404 + + L P+ + T +G + + +VG +A+ D R Sbjct: 195 TLALAKTLQFPDFYRETEYVGLVSDDEEYPLLMGDVGSTDGKRLGKKDYRQATNEFIDPR 254 Query: 405 --------ADHPFVGYGLLPMEVHS-----------EQGC------DVISRLKVRINEVY 439 + ++ L ++S E+ + ++ E+ Sbjct: 255 SSAKFAKWSRDSYLVGALARFNLNSDKLHPTAKAIAEELGLKPICHNPYLNTVAQVVEIV 314 Query: 440 TALNMIDYGLDNLPGGPLMVEG----------FTYIPHRFALGFAEAPRGDDIHWSMTGD 489 + +L + + + +G E PRG H +T Sbjct: 315 HCYEHAIDLIKDLKKNGINYDEEIVVGVNEQQKIPVRAGDGVGAVEVPRGILFHNYVTDS 374 Query: 490 NQKLYRWRCRAATYANWPTLRY----MLRGNTVSD---------APLIIGSLDPCYSCTD 536 N + + C T N + Y +L + D +++ + DPC SC+ Sbjct: 375 NGIIEQANCIIPTNQNIANIEYDMMKLLP--EILDQTKEEITLKMEMLVRAYDPCISCSA 432 Query: 537 RMT 539 Sbjct: 433 HYL 435 >UniRef50_B5YL31 NADH-quinone oxidoreductase n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YL31_THEYD Length = 201 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 58/177 (32%), Positives = 87/177 (49%), Gaps = 8/177 (4%) Query: 2 SEEKLGQHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQG-GWLSVL 60 +EE L Y L E FP V++ + + Q++V VK N + E++++L +QG L L Sbjct: 32 TEESLKIAY--KLKEQFPEEVIEIK-EFRGQVSVIVKSNKIKEILKYLKNQQGFNHLQDL 88 Query: 61 FGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRD 120 G D + + Y L + I VR +V+ PE SVT A W ERE D Sbjct: 89 CGVDYSPEKPRFEIVYNL-YSIWRRLHIRVRAKVNEETPELDSVTDLWEGANWHERECFD 147 Query: 121 MYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDK 177 M+G+ +G PD RR+++P+DW YPLRKD + + E E + +K Sbjct: 148 MFGIRFIGHPDLRRILMPEDW--NGYPLRKD-YPLKGKELWRGFREIIESSSVEENK 201 >UniRef50_A6Q3L3 Ni-Fe hydrogenase, large subunit HupV n=1 Tax=Nitratiruptor sp. SB155-2 RepID=A6Q3L3_NITSB Length = 403 Score = 147 bits (372), Expect = 9e-34, Method: Composition-based stats. Identities = 77/403 (19%), Positives = 138/403 (34%), Gaps = 64/403 (15%) Query: 191 SDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHST 250 + D + I D LF +RG+E++ R + + ++ R+CGICG AH Sbjct: 9 IEGEAFLEFQKDKQTITDVKV-LFPHYRGIEEILRGRDPW-DALVINPRICGICGHAHLQ 66 Query: 251 AYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGL-ACHFTGFDSGFMQFFRVRE 309 A +E+ + + ++A+ IR I E + +H+ L H F + + Sbjct: 67 ATAMVLESIFQVNITQKAKNIREITRFCEIIQNHIKWFYLVIFHELNIPYDFTKVHHLIV 126 Query: 310 TSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNM 369 T K+ + +G ++GG+ D ++ Q + L QQ+R + +L+ L N+ Sbjct: 127 TINKLLALFSGQWPHSSYCVVGGVTCDPTSLEIHQAKTLIQQIRDQFIQLIGKLHDPLNL 186 Query: 370 EQRTVGIGRLDPEIARDFSNVG-PMVRASGHARDT------------RAD---------- 406 ++ VG R ++D+ R Sbjct: 187 TNDLQ--KLYRTLQEKELLLVGKSHDRFITFSQDSHVSNIKLLHGQKRKTKLTLIEENEQ 244 Query: 407 -HPFV--------GYGLLPMEVHSEQGCDVISRLKVR----------INEVYTALNMIDY 447 + Y P+ +Q D R R I +Y +I+ Sbjct: 245 KRSYAKNVTYNGKYYETGPLARLMQQT-DPFVRYFHRRFKDSITTRIIARIYEVSLLIEK 303 Query: 448 GLDNLPGGPLMVEGFT--YIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYAN 505 +D+L L + A+ EA RG IH + K+ + T N Sbjct: 304 IIDHLATIDLSQPSVVESKMQDGTAIISIEAARGSLIHQATIH-QGKIETYNFITPTQWN 362 Query: 506 W--------PTLRYMLRG---NTVSDAPLIIGSLDPCYSCTDR 537 ++ + G +++ LI S D C CT Sbjct: 363 LSNGTSQNPSVIQKAIVGTSDEKIAN--LIFRSFDICSVCTTH 403 >UniRef50_A5I2W3 Hydrogenase large subunit n=15 Tax=Clostridium RepID=A5I2W3_CLOBH Length = 471 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 76/473 (16%), Positives = 156/473 (32%), Gaps = 104/473 (21%) Query: 179 NNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSD 238 ++ I P+ ++ V+ I+D + + RG EK+ E R + + + ++ Sbjct: 2 GKIITIDPIT-RISGFLEIKVKVEDNIIVDGETS-GLLFRGFEKMLEGRPPLDSI-YFTE 58 Query: 239 RVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFD 298 R+CGIC AH+TA T ++ENA+ I IR ++ E + +HL + + Sbjct: 59 RICGICSTAHATASTLALENALNITPSINDIYIRDMMHGFEFIQNHLRQFYCFTVPSYVN 118 Query: 299 SGFMQFFRVRETS-----MKMAEILT--------------------GARKTYGLNL-IGG 332 ++ +E S K+ E ++ G + + + +GG Sbjct: 119 LPNIRPIYPQEYSDFRLPKKLNERISSHYEEGIKYSRLAHEALAVLGGKAPHSHGIFVGG 178 Query: 333 IRRDLLKDDMIQTRQLAQQMRRE-----------VQELVDVLLSTPNMEQRTVGIGRLDP 381 + ++ + + + + + +++ + + + N + G D Sbjct: 179 VTVNIDSYKLTKIQSILKAIKKFVNIYMLEDMNIIAQYYPEYFNLGNTYGNFMSFGVFDK 238 Query: 382 EIARDFSNVGP------------------MVRAS---------------GHARDTRADHP 408 ++ S V P +R + + D + + Sbjct: 239 YKDKNISYVKPGVIINNKLENFDRDKITENIRYAWYVSDTIIENPIMNNEYTVDLKKEGA 298 Query: 409 FVG-----YGLLPMEV--------HSEQGC--DVISRLKVRINEVYTALNMIDYGLDNLP 453 + Y LPMEV E + R R+ E +N++ + + Sbjct: 299 YSFVKAPRYADLPMEVGPLARLKIAGEYTGGNSSMDRNIARVLETKKIINILYNISEKIQ 358 Query: 454 GGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWP------ 507 + F G + RG H+ +N+ + + T N Sbjct: 359 LLSNNQSAYNIPEGAFGEGLIDTTRGALSHFIKI-ENKTIKYYNIITPTAWNISPKDSKG 417 Query: 508 ---TLRYMLRGNTVSDAPL------IIGSLDPCYSCTDRMTVVDVRKKKSKVV 551 L G+ + + II S DPC SC + + K +V+ Sbjct: 418 TRGVGEKSLIGSKIDNIEKPVEIGRIIRSFDPCISCATHLVSNNNEPVKVEVL 470 >UniRef50_C1A0H7 Putative NiFe hydrogenase alpha subunit n=2 Tax=Corynebacterineae RepID=C1A0H7_RHOE4 Length = 434 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 73/423 (17%), Positives = 125/423 (29%), Gaps = 71/423 (16%) Query: 189 VTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAH 248 + G V + A+ ++ R E R + E ++ R+CGIC A+ Sbjct: 18 ARVEGEGRLAFTVRHGRVEAAELNIYEPPRFFESFLRGR-DFREPPDITSRICGICPVAY 76 Query: 249 STAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLA--CHFTGFDSGFMQF-- 304 + ++E A G + + +R +L E + SH L++ L F G Sbjct: 77 QVSACNAIEQACGAHLTQPILDLRRLLYCGEWIASHTLHIYLLHAPDFLGASDAIELARI 136 Query: 305 --------FRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREV 356 +++ + +++ G +GG R ++ + + + Sbjct: 137 ARPDVERGLTLKKAGNAILDMIGGRSIHPVNVRLGGFYRTPTPSELAPLAEQLRWALDDA 196 Query: 357 QELVDVL--LSTPNMEQRTV------------GIGRLDPEIARDFS-------------- 388 V + P+ E T G L F+ Sbjct: 197 LATVQWVSHFEIPDAEVDTELLALAQPGRYAIEDGVLTTTSGSSFAPEEFCDHVAERQVP 256 Query: 389 --------------NVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVR 434 GP+ R S H+ D V ++ R Sbjct: 257 HSTALHAHLDGQAYLTGPLARYSLHSADLSETARQAATEAGLGTVCRNPFQSIVVRAVET 316 Query: 435 INEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLY 494 + V AL +I P P + G +EAPRG H ++ Sbjct: 317 VFAVDEALRLIREYYR--PESPYV---DMSPRAATGYGVSEAPRGVLYHLYQLDSEGRIL 371 Query: 495 RWRCRAATYANWPTLRYMLRGNT-----VSDAPL------IIGSLDPCYSCTDRMTVVDV 543 R T N + LR ++DA L I + DPC SC V + Sbjct: 372 RATIIPPTSQNQAAIENDLRNTLAANLTLTDAELTELCERTIRNYDPCISCATHFLDVTI 431 Query: 544 RKK 546 +K Sbjct: 432 NRK 434 >UniRef50_Q00404 F420-non-reducing hydrogenase vhc subunit A n=10 Tax=Euryarchaeota RepID=VHCA_METVO Length = 474 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 79/452 (17%), Positives = 148/452 (32%), Gaps = 107/452 (23%) Query: 189 VTSDEPGHFRLFV---DGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICG 245 + GH ++ + D + ++ + V RG EK E R + + R+CGIC Sbjct: 8 PVTRVEGHGKVTLSFDDSGKLDKVNFHVVEV-RGFEKFLEGR-YIEDAPIFTPRICGICQ 65 Query: 246 FAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLAC------------- 292 +H A +V+N G+++PE A M+R ++ + +HSH L+ G+ Sbjct: 66 VSHHLASAKAVDNVFGVKIPETANMLRNLIHQASNVHSHALHFGMLASPDLMFPTTDDAL 125 Query: 293 --HFTGF----DSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLK------- 339 + G +R+ + + + G ++GG + L + Sbjct: 126 KRNLLGVAGENMDMIKDSIAMRKVGQTIVQKVGGRAIHPVTAIVGGQSKPLTEEERDELL 185 Query: 340 -------DDMIQTRQLAQQMRREVQELVDVLLST-PNMEQRTVGIG----------RLDP 381 + +T + ++M ++E + L + V G ++ Sbjct: 186 TLSDNLVETAERTLNVGKEMVENLKEKDLMNLGYFESYHMGLVNNGAQDIYEGNIRVVNS 245 Query: 382 EIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVI-----SRLKV--- 433 E ++ P A+ R P+ L + +G SRL V Sbjct: 246 EGKIEYEFD-PAEYANYITEGVR---PYSYLKFLALLKRRGEGKGAYRVNTLSRLNVCDK 301 Query: 434 ------------------------------RINEVYTALNMIDYGL--DNLPGGPLMVEG 461 R+ E+ ++ +I L D + + E Sbjct: 302 MPTPIAQKYYEEFVKTYGKPAHQPMLFHYARLIELLSSSELIRKFLEDDKIVDTDVRAEV 361 Query: 462 FTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTL------------ 509 +G EAPRG IH T D + AT N P + Sbjct: 362 DPKNITGEGVGCVEAPRGTLIHHFKTDDRGIINDTNLVVATVQNNPAMDIGVQKVAEKYI 421 Query: 510 --RYMLRGNTVSDAPLIIGSLDPCYSCTDRMT 539 + + + ++ ++I + DPC SC Sbjct: 422 KTPEVAKPHILNHMEMVIRAYDPCLSCATHTI 453 >UniRef50_A7NIW0 NADH-quinone oxidoreductase subunit C n=6 Tax=Chloroflexi (class) RepID=NUOC_ROSCS Length = 174 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 7/172 (4%) Query: 9 HYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYK---QGGWLSVLFGNDE 65 LA L A P +L + + + L+V V+ + +V FL + +L L G D Sbjct: 7 TVLARLQAALPDALLGSS-EFRGDLSVHVRPERIVDVARFLRDDPELRYHFLENLCGVDY 65 Query: 66 RKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLI 125 + V Y L + + I ++V V P PS+T P A + ERE DM+G++ Sbjct: 66 LGREPRFEVVYHL-LSFANRHRICLKVGVSERNPSVPSLTELWPGANYHERETFDMFGIV 124 Query: 126 PVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDK 177 G P R+++P+DW E +PLRKD + A T + + + Sbjct: 125 FTGHPCLDRILMPEDW--EGHPLRKDVPLGAEEVAFTFNQDRIYAHKPFAKE 174 >UniRef50_B3QUS1 NADH-quinone oxidoreductase n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QUS1_CHLT3 Length = 177 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 49/143 (34%), Positives = 80/143 (55%), Gaps = 7/143 (4%) Query: 13 ALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWL-SVLFGNDERKLNGH 71 AL AFP +L+ + +++LT VK + E+ +FL + G L + G D Sbjct: 8 ALQSAFPKALLETT-KFRNELTFRVKKENIREISQFLKEELGFNLCVDICGADRFNEEPR 66 Query: 72 YAVYY-VLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLP 130 + V Y ++++E T+ I ++V ++ KP PSV PAA W ERE DM+G++ V P Sbjct: 67 FEVIYNLMNLEHNTR--IRLKVWLEEAKPHLPSVISVWPAADWYERETYDMFGIVFVNHP 124 Query: 131 DERRLVLPDDWPDELYPLRKDSM 153 D RR+ +P+D+ E +P+RK+ Sbjct: 125 DMRRIYMPEDF--EYFPMRKEFP 145 >UniRef50_B5YHQ8 Hydrogenase/sulfur reductase, alpha subunit n=2 Tax=Bacteria RepID=B5YHQ8_THEYD Length = 442 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 74/432 (17%), Positives = 147/432 (34%), Gaps = 79/432 (18%) Query: 191 SDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHST 250 + G+ + V + + R E R Y E ++ R+CGIC H+ Sbjct: 15 VEGHGNIVVEVKDGKLEICRLEIVESPRFFEAFLRGRSIY-EAPHITCRICGICSCGHTL 73 Query: 251 AYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLA--CHFTG----------FD 298 A + E+A+GI+ E+ ++R +LL E+L SH+L++ L G Sbjct: 74 ASIQAAEDALGIKPTEQTVLLRKLLLHYEQLDSHILHIYLLVAPDLVGVPSFVPLIKSHP 133 Query: 299 SGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQE 358 ++ R++ ++ +IL G +IGG + + D+ + + ++++++ Sbjct: 134 DVVIRALRMKRLCNELCDILVGRHVHPISAVIGGFTKLPSEIDLEEMHKKLLALQKDIEV 193 Query: 359 LVDVL--LSTPNMEQRTVGIGRLDPEIA--RDFSNVGPM--VRASGHARDTRADH---PF 409 +++ L P E+ T I ++ E + ++G R S + + P+ Sbjct: 194 TIELFKDLKFPEFERDTEYIALVNDEDEYPLLYGDIGSTDGYRVSKYEYKNVTNEFIVPY 253 Query: 410 VGYGLLPMEVHSEQGCDVISRLKVRINE-------------------------------- 437 S ++R + + Sbjct: 254 ASAKRTKWHRESYAVG-ALARFNLNYEKLHPKAKEAAATLGLKPKCINPYLNTVAQIVEC 312 Query: 438 ---VYTALNMIDYG------LDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTG 488 V A+ +I+ D + + G +G E PRG IH Sbjct: 313 VHCVEDAIRIIETLWQKGINYDEVVVPDINEHGLLPQRAGEGVGAVEVPRGLLIHHYECD 372 Query: 489 DNQKLYRWRCRAATYANWPTLRY-MLRGNTVSDAP------------LIIGSLDPCYSCT 535 + C T N + ML+ V + +++ + DPC SC+ Sbjct: 373 ERGIFRNANCIIPTNQNTHNIELDMLK--LVPEIINQSPEEIRLSLEMLVRAYDPCISCS 430 Query: 536 DRMTVVDVRKKK 547 M V + + Sbjct: 431 VHMVEVKLGDRD 442 >UniRef50_C1F9E1 NADH-quinone oxidoreductase n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F9E1_ACIC5 Length = 159 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 46/163 (28%), Positives = 79/163 (48%), Gaps = 9/163 (5%) Query: 1 MSEEKLGQHY-----LAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGG 55 MS+E + + + AL A PGV+ + +++LT+T+ + + E + Sbjct: 1 MSKEAVFEALKDNSAIQALESAAPGVITGAKYD-RNELTLTIARDSIRRACEIVRAAGYN 59 Query: 56 WLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGE 115 + S D + V Y L + K + + V VD++ P S+T PAA + E Sbjct: 60 FFSDCTCVDWYPSEPRFQVTYHL-LSHRLKQRVRLCVMVDSSDPSVESITSIWPAANYYE 118 Query: 116 REVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQR 158 REV D++G+ G PD RR+++P++W E +PL+K R Sbjct: 119 REVWDLFGVRFHGHPDLRRIMMPEEW--EGHPLQKTYPVEGYR 159 >UniRef50_D1CCD3 NADH-quinone oxidoreductase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CCD3_THET1 Length = 179 Score = 138 bits (347), Expect = 8e-31, Method: Composition-based stats. Identities = 44/160 (27%), Positives = 71/160 (44%), Gaps = 9/160 (5%) Query: 10 YLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYK---QGGWLSVLFGNDER 66 + L E PG + + + + T+ V V+ L ++ L Q +L + D Sbjct: 22 IINTLQEIIPGAI-EEVTVFRGETTIVVPVDRLIDIARTLRDNPAMQFNYLVDVTAVDWL 80 Query: 67 KLNGHY-AVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLI 125 + VY++ S+ + VRV + PS+T A WGERE DM+G++ Sbjct: 81 GRTPRFDVVYHLYSIPLNHAIRMKVRV---DDGQHVPSLTGLWELANWGERETYDMFGIV 137 Query: 126 PVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDA 165 G PD RR++LP+DW + +PLRKD + Sbjct: 138 FEGHPDLRRILLPEDW-QDGFPLRKDFPIGGYGIWAAENV 176 >UniRef50_Q2W3I6 NADH-quinone oxidoreductase subunit C n=6 Tax=cellular organisms RepID=NUOC_MAGSA Length = 199 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 46/156 (29%), Positives = 70/156 (44%), Gaps = 9/156 (5%) Query: 14 LNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGG---WLSVLFGNDERKLNG 70 + +A P VL +L++TVK + +V+ +L G L + G D Sbjct: 12 IAQALPQDVLGTEVNRCGELSLTVKAASIVKVMTYLKDDAGCLFKQLVDVCGVDWPGREQ 71 Query: 71 HY-AVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGL 129 + VY++LSM+ + + V + PSVT +A W EREV DMYG++ Sbjct: 72 RFDVVYHLLSMKHNQRVRVKVAT---DEETAVPSVTGVFSSAGWFEREVWDMYGVLFSDH 128 Query: 130 PDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDA 165 PD RR++ D+ E +PLRKD D Sbjct: 129 PDLRRILT--DYGFEGHPLRKDFPLTGYVEMRYDDE 162 >UniRef50_B6BMW7 Nickel-dependent hydrogenase, large subunit n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BMW7_9PROT Length = 419 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 74/431 (17%), Positives = 136/431 (31%), Gaps = 103/431 (23%) Query: 191 SDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHST 250 + GE I D F R +EK+ E + + ++ RVCGICG AH Sbjct: 8 IEGEAKLNFSFAGEEIDFVDIE-FMTARNIEKILEGKSAL-DALVINPRVCGICGHAHLI 65 Query: 251 AYTTSVENAM-GIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT-GFDSGFMQFFRVR 308 A ++E+ I++ ++A++IR + L E + +H L G ++ Sbjct: 66 ATVKALEDCYENIEISKKAEIIRELTLTFELIQNHFKWFYLTMRPLFGKKQEVLKATYPT 125 Query: 309 ETSMKMAEILTGARKTYGLNLIGGIRRDLLK----------------------------- 339 + K + G ++GG+ D+ + Sbjct: 126 QLMAKAIAVFGGQYPHTSYAIVGGVVCDITEIDIIKIKHYIEETIKFFETNLVQADTKDF 185 Query: 340 ---DDMIQTRQLAQQMRREVQELVDV-LLSTPNMEQRTVGIG-----------------R 378 D++ + + + ++E+ L R + G Sbjct: 186 LVCDNVDKVLKKNGDLPDILREIKKKKYLDHGKSYDRFIAFGENSYFTKGKSHKTITTHN 245 Query: 379 LDPEIARD----------------FSNVGPMVRASGHARDTRADHPFVGYGLLPM--EVH 420 + + ++ + VGP+ RA +P+ + H Sbjct: 246 ISIDYVKEQDNLNSLAKNVTYKDKYYEVGPLARA--------------MINKVPLVKDSH 291 Query: 421 SEQGCDVISRLKVRINEVYTALNMIDYGLDNLP-GGPLMVEGFTYI--PHRFALGFAEAP 477 G ++ SR+ R+ E+ LN L+ L P +E I + EA Sbjct: 292 RRYGDNIFSRIIARVCEIPQLLNHSKELLEKLDLSEPSYIEPNIDISQINASGESAVEAA 351 Query: 478 RGDDIHWSMTGDNQKLYRWRCRAATYA--------NWPTLRYMLRGNTVSDA---PLIIG 526 RG IH +N + + T N + + G + D L+ Sbjct: 352 RGSLIHKVEL-ENGIIKNYEIITPTQWNLGNGTRENLGVSQQAMVG--LKDVKTAELVFK 408 Query: 527 SLDPCYSCTDR 537 + D C CT Sbjct: 409 TFDVCSVCTTH 419 >UniRef50_Q1AZS0 Ni Fe-hydrogenase III large subunit-like protein n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZS0_RUBXD Length = 540 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 72/359 (20%), Positives = 118/359 (32%), Gaps = 53/359 (14%) Query: 183 PIGPLHVTSDEPGHFRLFVDGENIIDADYR-LFYVHRGMEKLAETRMGYNEVTFLSDRVC 241 P GPL +L +DG+ + +A + A L++R+ Sbjct: 231 PFGPLFPGLPGGLFLKLTLDGDTVAEASPSACGW--------ASPGPLTGPADALAERLA 282 Query: 242 GI---CGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFD 298 GI ++ +VE+A G ER RA LE ER SHL L + G Sbjct: 283 GIDPLSPASYRVLALRAVEDAAGAGADERTVRARAGALERERAASHLGWLSGFAYLIGHR 342 Query: 299 SGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQE 358 + ++ ++ G+ R LA+++ R Sbjct: 343 WLARRAAELQLAVLRA--------------EPAGM-----PGLRAAARSLARRIER---- 379 Query: 359 LVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPME 418 TP + +R GIG L GP+ RA+G D R Y L E Sbjct: 380 -------TPLLARRLEGIGALPGGT----GASGPVARAAGVRTDARCGE--GAYRALGFE 426 Query: 419 VHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPR 478 +G D ++RL+VR+ E+ +L + + E PR Sbjct: 427 PVVREGGDALARLRVRLAEIEESLGLAAAA----GSLDIPAPRAATGASGAGAATVETPR 482 Query: 479 GDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 G D + + + + + + ++DA + + SLD T R Sbjct: 483 GTATLRVALSDGE-VVSAELEGPSARHLALVGRVAEQRELADALVGVASLDLSPWETAR 540 >UniRef50_C0QP83 Nickel-dependent hydrogenase, large subunit n=2 Tax=Hydrogenothermaceae RepID=C0QP83_PERMH Length = 428 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 66/419 (15%), Positives = 145/419 (34%), Gaps = 64/419 (15%) Query: 191 SDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHST 250 + G LF + + D +F R +E + + + Y + ++ R+CGIC A+ Sbjct: 11 VEGEGSISLFYENGTLKDVKLNIFEPPRFIEGILKGKEYYR-IIDVTSRICGICPVAYQI 69 Query: 251 AYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACH----------FTGFDSG 300 + ++E+A G++V + +R + E + SH +++ G DS Sbjct: 70 SGVQAIEDAFGLKVSSEIEKLRRLYYFGEWIQSHAVHVFFLHLPDFLNKGSVFEVGKDSP 129 Query: 301 FMQFFR--VRETSMKMAEILTGARKTYGLNL-IGGIRRDLLKDDMIQTRQLAQQMRR--- 354 ++ ++ + + G R ++ +++ +GG + D + L ++ Sbjct: 130 EFLKIGTIIKNAGSEIIQKI-GGRVSHPVSISVGGFTKFADDDSLKSIIPLLEKALDLSV 188 Query: 355 --------------EVQELVDVLL---STPNMEQRTVGIG--RLDPEI----ARDFSNVG 391 E+ ++ + L P ++ V RL E +++ Sbjct: 189 YALKRFSEFNFPDNEIPDIHFLSLEEEEYPILKGDIVSNKGLRLTKEEFDNVIKEYQVDH 248 Query: 392 PMV-RASGHARDT-------RADHPFVGYGLLPMEVHSEQG-----CDVISRLKVRINEV 438 RA + RD R ++ + + ++ + + + +R+ E+ Sbjct: 249 STAKRAKLYGRDLYIVGPISRFNNSYEKLSYMALKSSKDIDLYPPIKNSFKTILIRMVEI 308 Query: 439 YTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRC 498 +L + + L +T + G +EAPRG H K+ + Sbjct: 309 IHSLERSIDLIKDYRKESLKNADYT-VKEGTGYGVSEAPRGILWHKYSFDSEGKIKKADI 367 Query: 499 RAATYANWPTLRYMLRG---------NTVSDAPLIIGSLDPCYSCTDRMTVVDVRKKKS 548 T N + +R + +I + DPC SC + + K Sbjct: 368 VPPTSQNQDIMEVSVRNMIMNRENIEEILKTGEKVIRNFDPCISCATHFLKIGEIRGKK 426 >UniRef50_Q2S5J1 NADH-quinone oxidoreductase n=3 Tax=Rhodothermaceae RepID=Q2S5J1_SALRD Length = 234 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 52/183 (28%), Positives = 81/183 (44%), Gaps = 12/183 (6%) Query: 9 HYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQG-GWLSVLFGNDERK 67 + AL E F VLD ++ T+ V+ N + EV FL ++G + L G D Sbjct: 47 AVIDALREEFGAAVLDVER-YANEDTIYVEKNRIREVCRFLKEEEGFDYFVDLGGIDNFT 105 Query: 68 LNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPV 127 Y V+Y L + + + ++V+VD + PSVT AA W ERE DM+G V Sbjct: 106 AEDRYEVFYNL-VSTERQKRLRLKVQVDEGDMQVPSVTEVYRAANWNEREAYDMFGFSFV 164 Query: 128 GLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPL 187 PD RR+ +P+D+ + +PLRK+ + + D + P Sbjct: 165 DHPDPRRMYMPEDF--DYHPLRKEF-------PQLGIPGSLPLPPQTPDGDLTMDPFAAA 215 Query: 188 HVT 190 H + Sbjct: 216 HGS 218 >UniRef50_A0L610 Nickel-dependent hydrogenase, large subunit n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L610_MAGSM Length = 432 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 78/429 (18%), Positives = 138/429 (32%), Gaps = 84/429 (19%) Query: 191 SDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHST 250 + G + V+ E I +F R E L + ++ + + RVC IC H+ Sbjct: 12 VEGHGGITVAVNEEGIQSCQMSIFEGARFYELLLKGKLA-RDAPGIVCRVCSICSAGHTL 70 Query: 251 AYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLAC--HFTGFDSGFMQFFRVR 308 A ++E+A+GI V + Q R +L + + SH L+L + G S Sbjct: 71 ASVMALESALGIHVSDTVQGFRTLLNLGQFIESHALHLFALAAPDYLGNASILQMASHFP 130 Query: 309 ETSMK---------MAEILTGARKTYGLNLI-GGIRRDLLKDDMIQTRQLAQQMRREVQE 358 E K + + + G R + +N+I GG+ R RQ Q + +++Q Sbjct: 131 EQVQKGLEIKRVGNLVQEVVGGRAIHPVNVIVGGLGRRP-------ARQAMQTLLQDLQN 183 Query: 359 LVDVLLSTPNMEQRTVG--------IGRLDPEIARDFSNVGPMVRASGHARDTRADHPF- 409 +D+ LS I + G + ASGH D H + Sbjct: 184 ALDLALSLRGFVASLQNPEMGLQPPILVALRASGARYGLTGTHLAASGHE-DIPVAHFYQ 242 Query: 410 --------------VGYGLLPMEVHSE----QGCDVISRLKVRINEVY------------ 439 Y P V + + ++ ++ E Sbjct: 243 RVNEKVVRHSTAKQSTYAKKPFMVGALARMVHNGERLTGEAAQLREALLPAQPTTLHNNA 302 Query: 440 ----TALNMIDYGL---DNLPGGPLMVEGFTYI---PHRFALGFAEAPRGDDIHWSMTGD 489 + ++ + + L GP ++ T + + L E PRG H Sbjct: 303 AQFVELVWALEEAVALCEALQEGPALIPPMTTMGFEGEQMGLAALEVPRGTLYHLYGVNG 362 Query: 490 NQKLYRWRCRAATYANWPTLR---YMLRGNTVS-----------DAPLIIGSLDPCYSCT 535 L + T N + G + +I + DPC SC+ Sbjct: 363 EGVLTQADIITPTAQNLAHVERDFAHGVGYWLEQPQRQQEQLRLYLEMIARAYDPCISCS 422 Query: 536 DRMTVVDVR 544 + + V+ Sbjct: 423 THLVDLTVQ 431 >UniRef50_B9S1B1 NADH-plastoquinone oxidoreductase 49 kD subunit, putative n=1 Tax=Ricinus communis RepID=B9S1B1_RICCO Length = 421 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 43/181 (23%), Positives = 62/181 (34%), Gaps = 58/181 (32%) Query: 275 LLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIR 334 +LE+ R+ SHLL LG G + F FR RE + E T Sbjct: 1 MLELSRIASHLLWLGPFMADIGAQTPFFYNFRERELVYDLFEAAT--------------- 45 Query: 335 RDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMV 394 +R G+G + E A ++ GPM+ Sbjct: 46 ------------------------------------ERVEGVGIVGAEEAINWGLSGPML 69 Query: 395 RASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPG 454 RASG D R + Y EV ++ D ++R VR + ++ LDN P Sbjct: 70 RASGVQWDLRQVDHYECYDEFDWEVQWQKEGDSLARYLVR-------IVFLNKFLDNKPK 122 Query: 455 G 455 G Sbjct: 123 G 123 >UniRef50_A9G9T0 NADH-quinone oxidoreductase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G9T0_SORC5 Length = 182 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 54/185 (29%), Positives = 74/185 (40%), Gaps = 13/185 (7%) Query: 1 MSEEKLGQHYLAALNEAFPGVVLDH--AWQTKDQLTVTVKVNYLPEVVEFLYYK---QGG 55 MS E + Q A L E V D + V + V L Sbjct: 1 MSPEAIFQALQAKLGE---DAVFDFHPVSAKDRDAWLQVAPAKIEPVCRLLREAPELDFD 57 Query: 56 WLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGE 115 +L + G D L VY++ S K + + ++V +D P ++ AA W E Sbjct: 58 YLECITGVDYPDLKKIVVVYHIYSYAKKHR--VVLKVFLDRESPAVSTLVDVWSAANWQE 115 Query: 116 REVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMD-YRQRPAPTTDAETYEFINEL 174 RE D+ G+ G PD RRL+LPDDW E +PLRKD + R PT E Sbjct: 116 RECFDLLGVRFEGHPDLRRLLLPDDW--EGHPLRKDWQEKAEYRGIPTQRPNPVELFKIK 173 Query: 175 GDKKN 179 KK+ Sbjct: 174 LPKKD 178 >UniRef50_B5YKI4 NADH-quinone oxidoreductase n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKI4_THEYD Length = 177 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 38/150 (25%), Positives = 68/150 (45%), Gaps = 10/150 (6%) Query: 9 HYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYK---QGGWLSVLFGNDE 65 + + + F VL +D+ ++ VK + +++ L + +L L D Sbjct: 5 EIIKRIRDKFSDEVLWF-ICFRDECSIVVKKEKIKDILSHLKNTPELEFDYLIDLTAVDY 63 Query: 66 --RKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYG 123 + VY+++S++ + I ++ +V SV A W ERE DM+G Sbjct: 64 LGFREPRFDVVYHLMSIKHKHR--IRIKAQVPEQGCCIDSVADLWATANWFERECYDMFG 121 Query: 124 LIPVGLPDERRLVLPDDWPDELYPLRKDSM 153 + G PD RR+++P+DW +PLRKD Sbjct: 122 IEFTGHPDLRRILMPEDW--NGFPLRKDYP 149 >UniRef50_UPI0001C31274 NADH (or F420H2) dehydrogenase, subunit C n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31274 Length = 169 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 4/162 (2%) Query: 8 QHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVLFGNDERK 67 + L + P VLD + + T+ V+ +V+ L K +L+ L G D Sbjct: 8 ELIAQDLRQKHPDAVLDT-LHFRGEATLIVEPARARDVLIVLREKGYRFLASLHGVDYYP 66 Query: 68 LNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPV 127 +V+Y L ++ T I V+V + + PSV P A EREV DM+G++ Sbjct: 67 EEPRLSVHYQL-LDMDTVDRIAVKVRMPLDDAHVPSVVDLWPGANHPEREVFDMFGVVFD 125 Query: 128 GLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYE 169 G PD RR+++P+D+ E +P R+D + T + + Sbjct: 126 GHPDMRRILMPEDY--EGHPQRRDFPIGGEPVIFTYNEDKIP 165 >UniRef50_C0Z771 NADH-quinone oxidoreductase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z771_BREBN Length = 424 Score = 131 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 46/156 (29%), Positives = 74/156 (47%), Gaps = 12/156 (7%) Query: 9 HYLAALNEAFPGVVLDHAWQT---KDQLTVTVKVNYLPEVVEFLYYKQ---GGWLSVLFG 62 Y++ ++EAF V++ ++ K+ T+T++ +V +FL + +LS L G Sbjct: 274 KYVSRISEAFGQEVIEASYINELGKEVPTLTIQNERWHQVAQFLRDDEQLSFEYLSDLHG 333 Query: 63 NDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMY 122 D VYY + + V+V+ + + SV A W ERE D+ Sbjct: 334 VDY---EDRLEVYYHF-YSYKNRQSLAVKVKTSREESKVASVMDLWHGANWNERETFDLL 389 Query: 123 GLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQR 158 G+ G D RR++LPDDW YPLRKD + Y + Sbjct: 390 GIHFPGHKDLRRILLPDDWV--GYPLRKDYVQYDEE 423 >UniRef50_A8UU10 Nickel-dependent hydrogenase, large subunit n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UU10_9AQUI Length = 419 Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats. Identities = 66/417 (15%), Positives = 131/417 (31%), Gaps = 83/417 (19%) Query: 191 SDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHST 250 + G + +GE + D +F R E+L + + ++V R+CG+C A+ Sbjct: 12 VEGLGRLSVLTEGEEVKDVRLEIFEPPRFFERLLKGKKP-DQVIDTVARICGLCPVAYQL 70 Query: 251 AYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACH-FTGFDSGFMQFFRVRE 309 + E+ ++VP + +R + E + SH ++ F++ R + Sbjct: 71 TAVEAFESIFELKVPRHIRELRRAIYCGEWVSSHSAHIFFLHLPDFYERESFLELMREKR 130 Query: 310 TSMK-----------MAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQE 358 ++ + E+L G +GG + + T + ++ Sbjct: 131 ELLEAGLQIRKTGNSIIELLGGRHIHPVNIRVGGFYKIPSAPRIENTLAEIESALPFAEK 190 Query: 359 LVDVLLS----------------TPNMEQRTVGIGR------LDPEIARDFSN------- 389 +++ L+ + T G ++ ++ Sbjct: 191 ALELFLNFDYPEMEKERIFVSLGNHEVYPITEGSAVSSEGMNIEKNEYEEYFVEYQLPHS 250 Query: 390 --------------VGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISR----- 430 VG + R + +G LP ++ + + +R Sbjct: 251 TALYSRLKDGKAYEVGALARI------------YNNFGKLPQDLREKVEGVLPARNPFKS 298 Query: 431 LKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDN 490 + RI EV AL + L+ GG VE +G EAPRG H Sbjct: 299 IIARIVEVIYALREAKHILEKFEGGEPHVEYSIR--EGEGVGITEAPRGILYHRYRVNSK 356 Query: 491 QKLYRWRCRAATYANWPTLRY--------MLRGNTVSDAPLIIGSLDPCYSCTDRMT 539 ++ T N + + G+ A ++ + DPC SC Sbjct: 357 GEVVFANIVPPTSQNQRAMEEDVLLGLKTLKNGDIRVLAEKLVRNFDPCISCASHFL 413 >UniRef50_A8M620 NADH-quinone oxidoreductase subunit C n=14 Tax=Actinomycetales RepID=NUOC_SALAI Length = 245 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 47/172 (27%), Positives = 70/172 (40%), Gaps = 11/172 (6%) Query: 9 HYLAALNEAFP--GVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWL---SVLFGN 63 AL EA+P G ++ + +LT+ ++ + EV + L S + G Sbjct: 75 EVADALEEAYPAFGEAIEKVVVDRGELTLHIRPERIAEVCQVLRDDLALRFELCSSVSGV 134 Query: 64 DERKLNGH--YAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDM 121 D + +AVY + SM + I + V P PSVT P A W ERE DM Sbjct: 135 DYLGADARRLHAVYQLTSMTY--RRQIRLEAAVSVEDPHLPSVTGVYPTADWQEREAYDM 192 Query: 122 YGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINE 173 +G++ G P R+++PDDW E +P RKD Sbjct: 193 FGIVFDGHPGLTRILMPDDW--EGHPQRKDYPLGGVPVEYKGAEIPPPDRRR 242 >UniRef50_Q30QL7 Nickel-dependent hydrogenase, large subunit n=1 Tax=Sulfurimonas denitrificans DSM 1251 RepID=Q30QL7_SULDN Length = 417 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 68/421 (16%), Positives = 137/421 (32%), Gaps = 85/421 (20%) Query: 191 SDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHST 250 + I D F R +E + + + + + ++ RVCGICG AH Sbjct: 8 IEGEAKLNFNFKENKIDFVDVE-FMSTRNIENILKGKRAF-DALVINPRVCGICGHAHLM 65 Query: 251 AYTTSVENAM-GIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT-GFDSGFMQFFRVR 308 A ++E+ + + ++A++IR + L E + +H L + G ++ Sbjct: 66 ATVQALESCYDNLILSDKAKIIRELTLNFELIQNHFKWFYLTLYPLFGKKQQILKATYPS 125 Query: 309 ETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRR-------------- 354 + K ++ G ++GG+ ++ + D+I+ + Q + Sbjct: 126 QLMSKAIAVIGGQYPHTSYAIVGGVACEITEIDLIKVQHYIAQTLKFVEQNLLKVESEVF 185 Query: 355 ------------EVQELVDVLLSTPNM-----EQRTVGIG-----------------RLD 380 ++ E++D + ++ + R + G + Sbjct: 186 LKTEDANSLYDGDLTEILDEIKNSELLGYGKSYDRFISFGENSFFKKGKSVKTKVTHNIS 245 Query: 381 PEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLP----------MEVHSEQGCDVISR 430 ++ S A++ + G L ++VH + G + SR Sbjct: 246 LVDVKESQIT------SSFAKNVSFKDKYYEVGPLSRAMINKTPLIIDVHKKYGDSIFSR 299 Query: 431 LKVRINEVYTALNMIDYGLDNLP-GGPLMVEGFTYIPH--RFALGFAEAPRGDDIHWSMT 487 + RI E+ L + + P +E I EA RG IH Sbjct: 300 ILARIYEISQLLEHSRGLIKKIDLSQPSYIEPSIDISKLSGSGYSAVEAARGTLIHRVEL 359 Query: 488 GDNQKLYRWRCRAATYANWP--------TLRYMLRGNTVSDA---PLIIGSLDPCYSCTD 536 ++ + + T N + + G +SD L+ S D C CT Sbjct: 360 -ESGIIKNYEIITPTQWNLSGGTRENHGVSQRAMVG--LSDVKIAELVFKSFDVCSVCTT 416 Query: 537 R 537 Sbjct: 417 H 417 >UniRef50_Q11XR7 NADH-quinone oxidoreductase n=4 Tax=Sphingobacteriales RepID=Q11XR7_CYTH3 Length = 168 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 49/161 (30%), Positives = 71/161 (44%), Gaps = 13/161 (8%) Query: 8 QHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQ---GGWLSVLFGND 64 Q AA+ E F + Q + V+ +L ++ FL + LS L G D Sbjct: 6 QDIKAAIAERFGEAAITGEQAALAQPQLLVQKAFLKDICFFLRDDERFFFDQLSCLTGLD 65 Query: 65 ERKLNGHYAV-YYVLSMEKGTKCWITVRVEVDANK-----PEYPSVTPRVPAAVWGEREV 118 + V Y++ S+ ++ ++VE + PE PSV A W ERE Sbjct: 66 NGPVKNTVEVIYHLYSIPF--HLFLVIKVEAERGDGKDILPEIPSVEQVWRTADWHEREA 123 Query: 119 RDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRP 159 D+YG+ G PD RR++LP DW E YPLRKD + Sbjct: 124 FDLYGIRFSGHPDLRRILLPADW--EGYPLRKDYTEQEYYH 162 >UniRef50_B2UPT7 NADH-quinone oxidoreductase n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UPT7_AKKM8 Length = 194 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 40/140 (28%), Positives = 68/140 (48%), Gaps = 5/140 (3%) Query: 15 NEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQG-GWLSVLFGNDERKLNGHYA 73 F ++ ++ + +T+TV + +VV +L G L L D + + Sbjct: 16 QNRFGKDIITDRYEFRGDITLTVARQAVADVVRWLRDSAGFDMLVNLSSVDNMGESPRFE 75 Query: 74 VYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDER 133 V Y L + T ++++ +VD + E PSVT +A W ERE D+ G+ G PD R Sbjct: 76 VNYTL-TQSETGANLSLKTKVDDGE-EVPSVTEIFQSANWHEREAWDLMGIKFSGHPDLR 133 Query: 134 RLVLPDDWPDELYPLRKDSM 153 R+++ + +P +PLRKD Sbjct: 134 RILMWEGYP--YFPLRKDFP 151 >UniRef50_A4ITI5 NADH-quinone oxidoreductase chain C n=73 Tax=Bacillaceae RepID=A4ITI5_GEOTN Length = 514 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 48/155 (30%), Positives = 73/155 (47%), Gaps = 14/155 (9%) Query: 8 QHYLAALNEAFPGVVLDHAWQTK---DQLTVTVKVNYLPEVVEFLYYKQ---GGWLSVLF 61 Q Y+ + E VL+ A+ + D T+ V +V EFL Y + +LS L Sbjct: 363 QKYVRVIEEHLGPDVLEDAYINRLAKDVPTLVVNKEAYYKVAEFLKYNEQLRFDYLSELH 422 Query: 62 GNDERKLNGHYAVY-YVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRD 120 G D H VY ++ S K + + ++V++D + PE S+ P P A W E E D Sbjct: 423 GTD---FQTHMEVYVHLYSYPK--RQPVALKVKIDRDNPEIDSLVPLWPGANWPECEAYD 477 Query: 121 MYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDY 155 + G+ G P+ R+ L + W +PLRKD Y Sbjct: 478 LLGIRFRGHPNLIRIFLGEQWV--GHPLRKDYEPY 510 >UniRef50_B3DXN6 NADH-quinone oxidoreductase n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DXN6_METI4 Length = 213 Score = 128 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 40/154 (25%), Positives = 73/154 (47%), Gaps = 6/154 (3%) Query: 25 HAWQTKDQLTVTVKVNYLPEVVEFLYYKQG-GWLSVLFGNDERKLNGHY-AVYYVLSMEK 82 + + + T+ + ++ + +V +L ++G G L + G D + VY+ +++K Sbjct: 22 EVKEFRGEWTLVMDLSIIQQVARYLKEEKGFGLLLDISGVDHWGEEPRFEVVYHFYNLQK 81 Query: 83 GTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWP 142 T + V+ V P P+++ P A W ERE DM+G+I G PD RR+++ + +P Sbjct: 82 AT--LLRVKGRVSEANPIVPTLSFIYPTANWHEREAYDMFGIIFEGHPDLRRILMWEGYP 139 Query: 143 DELYPLRKDSMDYRQRPAPTTDAETYEFINELGD 176 YPLRKD + + A + G Sbjct: 140 --YYPLRKDFPVEGKETDQSPVAFAKPAPLDGGP 171 >UniRef50_C7NPL2 Nickel-dependent hydrogenase large subunit n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NPL2_HALUD Length = 439 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 78/436 (17%), Positives = 140/436 (32%), Gaps = 93/436 (21%) Query: 194 PGHFRLFVDGE--NIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTA 251 GH + V+ E + ++++ R E + R + E ++ R+C IC +H+ A Sbjct: 16 EGHGSIVVNAEDGELDTCEWQVVESPRYFESMLVGR-SFEESHHVTSRICAICSVSHTIA 74 Query: 252 YTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLG--LACHFTG----------FDS 299 + E A+G+ V E+ + +R + L E L SH+L+LG G + Sbjct: 75 SLQATEAALGVSVSEQDRRLRKLALYGETLQSHVLHLGYLALPDLVGEKSVLPLADTHED 134 Query: 300 GFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQEL 359 + ++ E++TG + GGI + + ++ V EL Sbjct: 135 ELETVIDLHRLGNELTEVVTGRSVHAQRLVPGGISQLPEESELQALLDRLVNSWDAVAEL 194 Query: 360 VDVL----LSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415 D+L P E+ T I PE + ++ D + P Y + Sbjct: 195 ADLLAVLADEFPAFERETEYISLTHPEEYA-------FAEGTIYSSDV-GEIPVSDYRDV 246 Query: 416 PMEVHSEQGCDVISR-----LKV---------------RINEVY---------------- 439 E E +R V R E+ Sbjct: 247 ANEYVVEHSTAKFARHERESYMVGALARFNNNADQLAPRATEIADRFGLDAPVHNPYLNN 306 Query: 440 ------------TALNMIDYGLDN--LPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWS 485 ++ +I+ LD+ P V +G E PRG H Sbjct: 307 VAQLVEVAHLLGESVRLIEALLDDGLTPQSNYHVPEID-PTAGQGIGAIEVPRGVLFHEY 365 Query: 486 MTGDNQKLYRWRCRAATYANWPT----LRYMLRGNTVSD---------APLIIGSLDPCY 532 D ++ C T N + ++ T+ D +++ + DPC Sbjct: 366 AYDDTGEVTEANCVIPTNQNHGNIQRDMETLVP--TIVDHPEDEIKHSLEMLVRAYDPCI 423 Query: 533 SCTDRMTVVDVRKKKS 548 SC+ V+ + Sbjct: 424 SCSTHYLDVEFAGGEG 439 >UniRef50_Q466A9 F420H2 dehydrogenase subunit C n=4 Tax=Methanosarcinaceae RepID=Q466A9_METBF Length = 158 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 4/154 (2%) Query: 9 HYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYK-QGGWLSVLFGNDERK 67 L +L AFP + + +++ + V+ EV ++L Q L + G D K Sbjct: 5 EILKSLTGAFPEAISETTAESEIRARAYVEKEKTKEVCQYLKDSLQFDHLCSVCGVDYIK 64 Query: 68 LNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPV 127 N VY++ S +T++ ++ PE S+ A W ERE +++G++ Sbjct: 65 RNELEVVYHIASY--NHPVVLTLKAKLPRENPEIESIVSVYWNANWYERETYELFGILFK 122 Query: 128 GLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAP 161 P+ + L+LP+D E PLRKD + + A Sbjct: 123 NHPNLKPLILPEDMLGEW-PLRKDYEGFPNKTAR 155 >UniRef50_Q9KGW7 NADH dehydrogenase I subunit C n=3 Tax=cellular organisms RepID=Q9KGW7_PSEFL Length = 200 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 45/158 (28%), Positives = 68/158 (43%), Gaps = 15/158 (9%) Query: 8 QHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGW--LSVLFGNDE 65 Q + LN F + V L EV+ FL + L L G DE Sbjct: 17 QDVVVELNNRFGPEAFTAQPTRTGMPVLWVARAKLVEVLTFLRNLPKPYVMLYDLHGVDE 76 Query: 66 R--------KLNGHYAV-YYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGER 116 R + V Y+++S+E+ + + ++V + + P+VT P A W ER Sbjct: 77 RLRTKRQGLPDGVDFTVFYHLMSIERNSD--VMIKVALSESDLSVPTVTGIWPNANWYER 134 Query: 117 EVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMD 154 EV DM+G+ G P R+++P W E +PLRKD Sbjct: 135 EVWDMFGIDFPGHPHLTRIMMPPTW--EGHPLRKDPGP 170 >UniRef50_Q28T74 NADH-quinone oxidoreductase subunit C n=7 Tax=Alphaproteobacteria RepID=NUOC_JANSC Length = 207 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 40/156 (25%), Positives = 65/156 (41%), Gaps = 9/156 (5%) Query: 14 LNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVL---FGNDERKLNG 70 L+E V+ +L+VTV + +EFL + S L D + Sbjct: 12 LSEKRSDDVVSTDVNAMGELSVTVAPAQMVGFIEFLKTDRTCRFSTLIDITAVDYPSRDR 71 Query: 71 HY-AVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGL 129 + VY+ LSM + + + + + PS++ P A W ERE+ DM+G++ G Sbjct: 72 RFDVVYHFLSMYQNHRVRVRAAI---REEDTLPSISGVHPGAGWYEREIYDMFGILFTGH 128 Query: 130 PDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDA 165 D RRL+ D+ +PLRKD + Sbjct: 129 ADLRRLLT--DYGFRGHPLRKDFPTTGYTEVRYDEE 162 >UniRef50_UPI0001693946 NADH dehydrogenase subunit C n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693946 Length = 249 Score = 127 bits (320), Expect = 9e-28, Method: Composition-based stats. Identities = 50/160 (31%), Positives = 77/160 (48%), Gaps = 21/160 (13%) Query: 1 MSEEKLGQHYLAALNEAFPGVVL--DHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLS 58 + EE + + Y+ LN P VV+ +H +Q +++ +LS Sbjct: 108 VHEEVIQEAYINELNGHLPCVVIHPEHWYQAAEEIHAH-------------EEFACNYLS 154 Query: 59 VLFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREV 118 L G D++ VY++ S+ G + + V+ D ++P PSVTP P A W EREV Sbjct: 155 NLTGIDQKSH--LEMVYHLRSIPSGREYMVKVKT--DRDRPSIPSVTPIWPTANWNEREV 210 Query: 119 RDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQR 158 D+ G+ G PD RR+++PDDW +PLRKD Sbjct: 211 YDLLGVDFPGHPDLRRIMMPDDWV--GHPLRKDYEPLDPE 248 >UniRef50_B4UIA3 NADH-quinone oxidoreductase n=4 Tax=Anaeromyxobacter RepID=B4UIA3_ANASK Length = 196 Score = 127 bits (320), Expect = 9e-28, Method: Composition-based stats. Identities = 53/164 (32%), Positives = 70/164 (42%), Gaps = 8/164 (4%) Query: 7 GQHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQG---GWLSVLFGN 63 L F V + D V VK + EV FL + G +L L Sbjct: 3 THEIHERLKARFGDDVGPLSEPKIDAFCV-VKAERIVEVSRFLATEPGLEMDFLEDLTAV 61 Query: 64 DERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYG 123 D K N VY++LS + I ++VE D P P+V A W EREV D++G Sbjct: 62 DWPKRNVIEVVYHLLSYR--HRHSIVLKVEADRAAPVVPTVEGVWKTANWFEREVYDLFG 119 Query: 124 LIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAET 167 + G PD RRL+LPDDW +PLRKD + + E Sbjct: 120 VSFPGHPDLRRLMLPDDWV--GHPLRKDYQEAGGWHGISNVREN 161 >UniRef50_C7NU24 Nickel-dependent hydrogenase large subunit n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NU24_HALUD Length = 472 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 75/443 (16%), Positives = 130/443 (29%), Gaps = 102/443 (23%) Query: 191 SDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHST 250 + G + +D E ++ RG E+ E R E+ ++ R+CGIC +H Sbjct: 13 VEGHGKITIHLDDEGSVEDAQFHVTEFRGFEEFVEGR-PIWEMPEITARICGICPVSHQL 71 Query: 251 AYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLAC---HFTGFDS-------- 299 A + ++ M VPE A +R ++ + L SH L+ G+D+ Sbjct: 72 AAAKAADDVMDADVPESAHKLRELMHMGQVLQSHALSFFYLSSPDLVLGYDADPADRNIE 131 Query: 300 --------GFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQT------ 345 + +R + L + + GG+ L ++D Sbjct: 132 GVLAENPQLAERGIDLRSFGQNVIAALGEKKVHPDFAVAGGVSNTLDREDGEDLLEESQP 191 Query: 346 -----RQLAQQMRREVQELVDVLLSTP--------------------------------- 367 R+ ++ +E+ D L Sbjct: 192 LAGYVRETIDLLKDIFEEMDDDTLDYATYPTGYMGLVTEEGGLEHYDGDIRLVDESGDQL 251 Query: 368 ----------NMEQRTVGIGRLDPEIARDFSN------VGPMVRASGHARDTRADHPFVG 411 + +R+ L +D VGP+ R + D R Sbjct: 252 EEIDDGAYRDIIAERSKEWSYLKFPYYKDRGFEDGQYRVGPLARLNAVD-DVRTPQAH-- 308 Query: 412 YGLLPMEVHSEQGCDVISR----LKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPH 467 +E V R R+ E+ + I L++ + T Sbjct: 309 --EEWVEFMDAAEGAVHERSTYYHWARLIEMLYCVERIQELLEDDDVYDGITNIPTKPKA 366 Query: 468 RFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTL--------RYMLRGNTVS 519 +G EAPRG IH D K+ AT N + + G + Sbjct: 367 GTGVGVIEAPRGTLIHEYTIDDGGKVENANFIVATTHNNGAMNKGVTSAAETFIDGPEIP 426 Query: 520 D-----APLIIGSLDPCYSCTDR 537 + +I DPC SC+ Sbjct: 427 EGILNKMESVIRCYDPCLSCSTH 449 >UniRef50_Q0CI54 NADH-ubiquinone oxidoreductase 30.4 kDa subunit, mitochondrial n=7 Tax=Eukaryota RepID=Q0CI54_ASPTN Length = 688 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 47/165 (28%), Positives = 75/165 (45%), Gaps = 14/165 (8%) Query: 5 KLGQHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYK---QGGWLSVLF 61 K GQ+ +A L + + KD+L + V + V+ FL Y + +S + Sbjct: 32 KYGQYIMACLPKH-----VQQFSVWKDELVIYVPPTGVIPVMSFLKYHTAAEYTQISDIT 86 Query: 62 GNDERKLNGHYAVYY-VLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRD 120 D + + V Y +LS+ ++ I V+ D +P PSVT A+W EREV D Sbjct: 87 AVDFPTRDQRFEVVYNLLSVRYNSR--IRVKTYADEARP-VPSVTGLFEGALWYEREVYD 143 Query: 121 MYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDA 165 M+G+ G PD RR++ D+ + +PLRKD + Sbjct: 144 MFGVFFSGHPDLRRIMT--DYGFDGHPLRKDFPLTGYTELRYDEE 186 >UniRef50_B5EQ52 Nickel-dependent hydrogenase large subunit n=10 Tax=Proteobacteria RepID=B5EQ52_ACIF5 Length = 432 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 82/422 (19%), Positives = 136/422 (32%), Gaps = 62/422 (14%) Query: 186 PLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICG 245 P+ + G L V I R+F R EK E R Y E+ + R+CGIC Sbjct: 12 PVLARVEGEGALDLEVHDGRIQTLRLRIFEPPRLFEKFLEGRE-YQEIPDMVARICGICP 70 Query: 246 FAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLL--NLGLACHFTGFDSG--F 301 A+ + ++E G + +R + E + SH L +L A F G+ S Sbjct: 71 VAYQMSAVHAIEGIFGQAPGPWVRAMRRVFYCGEWIQSHSLHIHLLAAPDFLGYSSASEM 130 Query: 302 MQFFRV---RETSMKMAE----ILTGARKTYGL-NLIGGIRRDLLKDDMIQTRQLAQQMR 353 + R +++ G R + + +GG R + + R+ + Sbjct: 131 ARAHPDIVRRGLALQALGNEIIRFFGGRSVHPVGARVGGFHRAPSRAEAAVLREQVRAAL 190 Query: 354 REVQELVDV--LLSTPNMEQRTVGIGRLDPE--------IARDFSNVGPMVRASGHARDT 403 + LV L+ P+ Q V + P+ I P+ H R+ Sbjct: 191 PGAEALVAWTAALNLPDDPQDFVSVALRHPDEYPMNEGRIVSSDGLDIPIADYESHFREH 250 Query: 404 RADHPFVGYGLLPMEV----HSEQGCDVISRLKVRINE-------------VYTALNM-- 444 + H Y L + + RL + + E ++ ++ Sbjct: 251 QEPHSTALYAALDGRPYLVGPLARLNLNLDRLHMPVREALGRTGIAFPSRNMFHSIVARA 310 Query: 445 --IDYGLDNLPG-----GPLMVEGFTYIPH-RFALGFAEAPRGDDIHWSMTGDNQKLYRW 496 I Y L +P G EAPRG H ++ Sbjct: 311 AEIHYALLETSRLLEDYTEPEAPFVPAVPRVGIGYGCTEAPRGLLWHRYDLDAAGQVLHA 370 Query: 497 RCRAATYANWPTLRYMLR-----------GNTV-SDAPLIIGSLDPCYSCTDRMTVVDVR 544 R T N + LR G T+ A ++I + DPC SC V + Sbjct: 371 RIVPPTSQNQARMEADLRHSLETLGLDRDGETLRQQAEMVIRNYDPCISCATHFLKVRLE 430 Query: 545 KK 546 ++ Sbjct: 431 RR 432 >UniRef50_B8HJR0 Coenzyme F420 hydrogenase n=14 Tax=Bacteria RepID=B8HJR0_CYAP4 Length = 433 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 70/425 (16%), Positives = 134/425 (31%), Gaps = 74/425 (17%) Query: 191 SDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHST 250 + G + + + + ++F R E R Y+E ++ R+CGIC A+ Sbjct: 14 VEGEGAMYVQIRDNRVREVKLKIFEPPRFFEAFLRGRQ-YSEAPDITSRICGICPIAYMM 72 Query: 251 AYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLA--CHFTGFDSGFMQF---- 304 + ++E+ +G+ V + +R +L E + SH L++ + F G+DS Sbjct: 73 SAVQAMEDILGVAVAGGMRDLRRLLYCGEWIESHALHIFMLHAPDFLGYDSVIAMAGDYP 132 Query: 305 ------FRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQ------- 351 R+++ ++ ++ G +GG + + D+ + Sbjct: 133 DLVQRGLRLKKIGNQIISLIGGRAIHPINVRVGGFYKLPSRQDLHSLVADLEWAVAAAAE 192 Query: 352 ---------MRREVQELVDVLLST----PNMEQRTVGIGRLD------------------ 380 + V L P + R V LD Sbjct: 193 TVRWVAAFPFPDFAPDYEFVALHHGEEYPMNQGRLVSNKGLDIPIHQFYDQIEEQHRPHS 252 Query: 381 ---PEIARDFS--NVGPMVRASGHARDTRADHPFVGYGLLPMEV-HSEQGCDVISRLKVR 434 ++ +GP+ R + + M +I+R Sbjct: 253 TALQAQLKERGNYFLGPLARF-NLNFEQLTPRTQAVAQSVGMTPLCRNPFKSIIARSLEV 311 Query: 435 INEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLY 494 + AL +ID +P +V+ G EAPRG H+ + Sbjct: 312 MFAAEEALRLID---SYIPPAQSVVDYTVR--AGCGHGCTEAPRGSLYHYYQIDQQGDIL 366 Query: 495 RWRCRAATYAN--------WPTLRYML---RGNTVSDAPLIIGSLDPCYSCTDRMTVVDV 543 + T N W + + S +I + DPC SC+ ++V Sbjct: 367 AAQIAPPTAQNQSTIEQDLWQFVEEHIDLPENQLRSQCEQVIRNYDPCISCSTHFLKLEV 426 Query: 544 RKKKS 548 +K S Sbjct: 427 DRKSS 431 >UniRef50_Q2J4F0 Nickel-dependent hydrogenase, large subunit n=4 Tax=Bacteria RepID=Q2J4F0_FRASC Length = 430 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 76/423 (17%), Positives = 126/423 (29%), Gaps = 74/423 (17%) Query: 191 SDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHST 250 + G + + + +A ++F R E R Y E ++ R+CGIC A+ Sbjct: 15 VEGEGRLLIKITDGRVDEAHLKIFEPPRFFEAFLRGR-AYTEPPDITARICGICPVAYQM 73 Query: 251 AYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLG--LACHFTGFDSGFMQF---- 304 + ++E + V +R ++ E + SH L++ F G+DS Sbjct: 74 SALAAIEQICDVTVTGPPAALRRLIYCGEWIESHALHVFLLHLPDFLGYDSALHLAQDQP 133 Query: 305 ------FRVRETSMKMAEILTGARKTYGLNLIGGI-----RRDLLK--DDMIQTRQLAQQ 351 +++ + ++ G +GG RRDL + + Q R +A+ Sbjct: 134 ALVKLGLTLKKAGNTLMTVIGGRAIHPVNARVGGWYRAPRRRDLTELVGQLEQARDIARD 193 Query: 352 MRREV-------QELVDVLL------STPNMEQRTVGIGRLDPEIA-------------- 384 R EL + P R LD A Sbjct: 194 TARFTAALDFPEDELHQTFVALHQPGEYPVERGRIASTAGLDIAPADYDRHFTEEQVPWS 253 Query: 385 ------RDFS---NVGPMVR-ASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVR 434 GP+ R A G R A + + + VR Sbjct: 254 NALHSTLAAGGSYLTGPLARFALGAERLAPAARETAA--EIGLRPPERNP---YRSIIVR 308 Query: 435 INEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLY 494 E+ A + + + P G EAPRG H N + Sbjct: 309 CIEMVHAADEALRIIADYTE-PDPSALEAPPRAGTGYGVTEAPRGLLYHRYTIDHNGTIL 367 Query: 495 RWRCRAATYANWPTLRYMLRG-----NTVSDAPL------IIGSLDPCYSCTDRMTVVDV 543 + T N + LRG +S+ L I + DPC SC + + Sbjct: 368 DAKIVPPTAQNQRPIEEDLRGVVERFMNLSEPELALRCERAIRNYDPCISCATHFLTLHI 427 Query: 544 RKK 546 Sbjct: 428 EHG 430 >UniRef50_A2BJ95 NAD(P)H-quinone oxidoreductase subunit J n=1 Tax=Hyperthermus butylicus DSM 5456 RepID=A2BJ95_HYPBU Length = 174 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 1/146 (0%) Query: 35 VTVKVNYLPEVVEFLYYKQGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEV 94 + V+ + + EVV L +L + G DE VY+ + + V V Sbjct: 25 LVVEPDRIREVVAELKNTGYDYLLSISGVDEPDAKRIRIVYH-FARSSNPGDVVAVETVV 83 Query: 95 DANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMD 154 ++P S+ PAA+ ERE +M G++ G PD R L+LP+DWP+ +YPLRKD Sbjct: 84 PRDEPVIDSIHDVYPAALLHEREEHEMLGIVFRGNPDSRHLLLPEDWPEGVYPLRKDFKV 143 Query: 155 YRQRPAPTTDAETYEFINELGDKKNN 180 + T ++ + K+ Sbjct: 144 VEESHMSTKPSKPVWILKPELKPKDE 169 >UniRef50_D1RAG7 NADH-quinone oxidoreductase n=2 Tax=Parachlamydiaceae RepID=D1RAG7_9CHLA Length = 173 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 47/161 (29%), Positives = 71/161 (44%), Gaps = 6/161 (3%) Query: 7 GQHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVLFGNDER 66 + L P +L Q + T+ V+ L +V+ +L + L L G D Sbjct: 3 AAEAIENLKNHCPEAILAQK-QFLGETTLEVQKENLIKVLSYLKHD-YEVLMDLTGVDYV 60 Query: 67 KLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIP 126 + V Y L K + I V V V+ +P PSVT A W ERE+ D++G+ Sbjct: 61 DPTPYTKVVYWLHNPKNFE-RIRVIVFVEREEP-IPSVTCLWDGAAWYERELFDLFGVPI 118 Query: 127 VGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAET 167 G PD +R+++PDDW + +PLR+D Q E Sbjct: 119 EGHPDLKRILMPDDW--KGHPLRRDYPLTEQPVQFKHGVEP 157 >UniRef50_Q50783 F420-non-reducing hydrogenase subunit A n=6 Tax=Methanobacteriales RepID=MVHA_METTH Length = 472 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 83/461 (18%), Positives = 140/461 (30%), Gaps = 98/461 (21%) Query: 189 VTSDEPGHFRLFV---DGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICG 245 + GH ++ V D N+ D + RG EK + R E + R+CGIC Sbjct: 8 PVTRIEGHAKITVHLDDAGNVEDTRLHV-MEFRGFEKFLQGR-PIEEAPRIVPRICGICD 65 Query: 246 FAHSTAYTTSVENAMGIQ---VPERAQMIRAILLEVERLHSHLLNLGLAC--HFTG---- 296 H A +V+ G + V A +R I+ +HSH L+ F Sbjct: 66 VQHHLAAAKAVDACFGFEPEDVLPAAYKMREIMNWGSYMHSHGLHFYFLAAPDFIAGKDR 125 Query: 297 -----------FDSGFMQFFRVRETSMKMAEILTGAR-KTYGLNLIGGIRRDLLKDDMIQ 344 +Q +R+ ++++ TG R + GGI +L + Sbjct: 126 KTRNVFQIIKDAPDIALQAIELRKNALELV-RATGGRPIHPTSSTPGGISTELDDETQKD 184 Query: 345 TRQLAQQ----MRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARD--FSNVGPMVR--- 395 + AQ+ ++ V + ++ I + +D + +VR Sbjct: 185 LLKKAQRNVELAEATLELAVPIFEENIDLVNSLGNIETYHTGLVKDGVWDVYDGIVRIKD 244 Query: 396 --------------ASGHARDTR----ADHPF---VGYGLLPMEV-------HSEQGCDV 427 A A + P+ +GY V +++ D Sbjct: 245 KEGNMFREFKPADYADTIAEHVKPYSWLKFPYIKDLGYPDGVYRVSPLSRLNVADKMPDA 304 Query: 428 ISRLKVRINEVYTALNMIDYGL-----------------DNLPGGPLMVEGFT---YIPH 467 + + E L + G L E F Sbjct: 305 APKAQEHFKEFRENFGYAQQTLLYHWARLIELLACAECAADALEGDLSGEKFPDSLERQA 364 Query: 468 RFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLR---------YMLRGNTV 518 +G EAPRG H +N + + AT N P + Y+ G V Sbjct: 365 GDGVGIVEAPRGTLTHHYTCDENGLITKANIVVATIQNNPAMEMGIQKVAQDYIKPGVEV 424 Query: 519 SD-----APLIIGSLDPCYSCTDRMTVVDVRKKKSKVVPYK 554 D ++I + DPC SC +R +V + Sbjct: 425 DDKIFNLMEMVIRAYDPCLSCATHTIDSQMRLATLEVYDSE 465 >UniRef50_A8LIT7 NADH-quinone oxidoreductase subunit C n=51 Tax=Alphaproteobacteria RepID=NUOC_DINSH Length = 215 Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 47/162 (29%), Positives = 66/162 (40%), Gaps = 10/162 (6%) Query: 8 QHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVL---FGND 64 Q A + P V+ D+LTV N + +V FL S L D Sbjct: 15 QELAAHIEMKRPDCVISTEI-AHDELTVVATPNSIVGLVAFLKTDATCKFSTLIDITAVD 73 Query: 65 ERKLNGHY-AVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYG 123 + + VY+ LSM + + I V V PS+ P+A W EREV DM+G Sbjct: 74 YPERAQRFDVVYHFLSMYQNHRIRIRVPV---REDDIVPSIISEHPSANWFEREVFDMFG 130 Query: 124 LIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDA 165 ++ G PD RR++ D+ YPLRKD + Sbjct: 131 ILFSGHPDLRRILT--DYGFRGYPLRKDFPTTGYTEVRYDEE 170 >UniRef50_P23710 NADH-ubiquinone oxidoreductase 30.4 kDa subunit, mitochondrial n=65 Tax=Eukaryota RepID=NDUS3_NEUCR Length = 283 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 9/140 (6%) Query: 30 KDQLTVTVKVNYLPEVVEFLYYK---QGGWLSVLFGNDERKLNGHYAVYY-VLSMEKGTK 85 KD+LT+ + + V FL Y + +S + D + + V Y +LS+ ++ Sbjct: 95 KDELTIYISPAGVIPVFSFLKYNTAAEYTQVSDITAVDFPTKDQRFEVVYNLLSVRHNSR 154 Query: 86 CWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDEL 145 I V+ D P PS+TP A W EREV D++G+ G PD RR++ D+ + Sbjct: 155 --IRVKTYADEVSP-VPSITPLYDGANWYEREVYDLFGVFFTGHPDLRRIMT--DYGFDG 209 Query: 146 YPLRKDSMDYRQRPAPTTDA 165 +PLRKD + Sbjct: 210 HPLRKDFPMTGYTEIRYDEE 229 >UniRef50_C6A4M9 NiFe hydrogenase II, catalytic subunit alpha n=4 Tax=Thermococcus RepID=C6A4M9_THESM Length = 416 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 74/417 (17%), Positives = 130/417 (31%), Gaps = 78/417 (18%) Query: 191 SDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHST 250 + G + ++ + D ++F R E L R ++ V L R+C IC +HS Sbjct: 12 VEGNGGAEILIENGEVKDVKVKIFEGPRFFELLTLGRHYWD-VPDLEARICAICYLSHSV 70 Query: 251 AYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLA--CHFTGFDSGFMQFFRVR 308 A +E A+G+ VPE ++R + L E + SH L+L L G+ + Sbjct: 71 ASVLGIERALGVNVPEEITLLRELGLLGELIESHALHLYLLVAPDLFGYADAIRMASKHG 130 Query: 309 ETSM---------KMAEILTGARKTYGLNL-IGGIRRDLLKDDMIQTRQLAQQMRREVQE 358 E L G R+ +G+N+ GG R +++ Q + + R + Sbjct: 131 EVVKEGITIKAFGNYIRELLGGREIHGINIKPGGFGRYPTIEELEQIESQCEALLRPARR 190 Query: 359 LVDVLLS---------TPNMEQRTVGIGRLDPEIARDFS--------------------- 388 +V++ + +L E F Sbjct: 191 VVNIFAEQEPLGATVQHYIATNEYLYGDKLIAEDGEKFDYLEHIEEKTLPYSFAKQSRYK 250 Query: 389 ----NVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNM 444 VG + R D Y ++ S V N + A+ + Sbjct: 251 GNIFMVGALPRV-MLKHDMLTPMAKHFYEEHKEKLASG---------YVSFNNLAQAIEL 300 Query: 445 IDYGLDN--------LPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRW 496 + Y L+ L G +G+ EAPRG +H + + Sbjct: 301 L-YALEKAKEVAKTLLDKGIEGENVPIEPQEGEGIGYVEAPRGVLVHHYRIDEKGNIAYS 359 Query: 497 RCRAATYANWPTLRYML------------RGNTVSDAPLIIGSLDPCYSCTDRMTVV 541 T N + L + + + DPC SC+ + + Sbjct: 360 NIITPTAFNHGIMELSLYEEARKRYGSSDETTFLQKLEETVRAFDPCISCSVHIVRL 416 >UniRef50_A9MAI1 NADH-quinone oxidoreductase subunit C n=86 Tax=cellular organisms RepID=NUOC_BRUC2 Length = 202 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 73/156 (46%), Gaps = 9/156 (5%) Query: 1 MSEEKLGQHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYK---QGGWL 57 MSEE LG+ L+ G ++ A +LT+ V V L V+ FL Q L Sbjct: 1 MSEEALGE--LSGYIRERLGDAIEEANLAYGELTLCVPVASLIGVLTFLRDDVQCQFVNL 58 Query: 58 SVLFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGERE 117 + + G D + + V Y L + I V+V+ D + PS P A W ERE Sbjct: 59 TDISGVDYPQREKRFDVVYQL-LSPRQNQRIRVKVQADEDTL-VPSAVPVFFGAEWYERE 116 Query: 118 VRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSM 153 DMYG++ G PD RR++ D+ E +PLRKD Sbjct: 117 AYDMYGILFSGHPDLRRILT--DYGFEGHPLRKDFP 150 >UniRef50_Q02CU1 NADH-quinone oxidoreductase n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q02CU1_SOLUE Length = 157 Score = 124 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 50/160 (31%), Positives = 78/160 (48%), Gaps = 6/160 (3%) Query: 1 MSEEKLGQHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGG-WLSV 59 M E L ++ +AA EAF + T +LT+ + V + + FL Y Q +S Sbjct: 1 MLPENLKENAVAAAVEAFDADAVRGGKVTFGELTLEIAVPKIASICGFLKYDQKFVRVST 60 Query: 60 LFGNDERKLNGHYA-VYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREV 118 + D + VY++ S+E+ + + ++ + P SVT A W EREV Sbjct: 61 VTAVDRYPAEPRFEIVYHLHSIERNQR--VRLKALLPGADPVIESVTGVWRGAGWYEREV 118 Query: 119 RDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQR 158 D++G+ + PD RR+++PDDW E YPLRKD R Sbjct: 119 FDLFGVRFLNHPDLRRILMPDDW--EGYPLRKDYPVTGTR 156 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P16431 Formate hydrogenlyase subunit 5 n=104 Tax=Bacter... 613 e-174 UniRef50_B6YTW8 Hydrogenase 4, component G or formate hydrogen l... 571 e-161 UniRef50_A1RWL3 NADH dehydrogenase (Ubiquinone), 30 kDa subunit ... 561 e-158 UniRef50_P77329 Hydrogenase-4 component G n=130 Tax=Bacteria Rep... 549 e-155 UniRef50_B6YWP8 Hydrogenase 4, subunit 5 n=1 Tax=Thermococcus on... 539 e-152 UniRef50_Q2RXM4 NADH-ubiquinone oxidoreductase n=1 Tax=Rhodospir... 534 e-150 UniRef50_B5YKR2 Hydrogenase-4 component G n=1 Tax=Thermodesulfov... 530 e-149 UniRef50_C5A3D4 Formate hydrogenlyase I subunit F (Mhy1F) n=2 Ta... 528 e-148 UniRef50_B7R5K6 Hydrogenase-4 component G n=1 Tax=Thermococcus s... 521 e-146 UniRef50_D2MJM9 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 ... 516 e-145 UniRef50_A1ASR5 NADH dehydrogenase (Ubiquinone), 30 kDa subunit ... 511 e-143 UniRef50_Q3A825 NADH-quinone oxidoreductase subunit B/C/D n=103 ... 510 e-143 UniRef50_A3DNE9 NADH dehydrogenase (Ubiquinone), 30 kDa subunit ... 501 e-140 UniRef50_Q1PZL4 Similar to membrane-bound [NiFe]-hydrogenase-3, ... 500 e-140 UniRef50_Q2YAA3 NADH-quinone oxidoreductase subunit C/D n=259 Ta... 482 e-134 UniRef50_A1RZ40 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 ... 479 e-134 UniRef50_Q0W2B9 Hydrogenase, large subunit-like protein (HycE-li... 476 e-133 UniRef50_Q6MIR5 NADH-quinone oxidoreductase subunit C/D n=1 Tax=... 474 e-132 UniRef50_D2U4G0 NADH-quinone oxidoreductase chain C/D n=1 Tax=Ar... 468 e-130 UniRef50_C8W240 Hydrogenase, large subunit-like protein n=1 Tax=... 467 e-130 UniRef50_Q2C5T4 NADH dehydrogenase I, B/C/D subunits n=2 Tax=Pho... 465 e-129 UniRef50_C9LCY9 NADH dehydrogenase I, C/D subunit n=9 Tax=Bacter... 462 e-128 UniRef50_B1ZSF2 NADH dehydrogenase (Quinone) n=1 Tax=Opitutus te... 458 e-127 UniRef50_B2V8J2 NADH-quinone oxidoreductase subunit C/D n=15 Tax... 457 e-127 UniRef50_Q5LH50 NADH-quinone oxidoreductase subunit C/D n=34 Tax... 450 e-125 UniRef50_B0R3U3 NADH dehydrogenase-like complex subunit CD n=16 ... 449 e-124 UniRef50_D1Z1Z0 Putative [NiFe]-hydrogenase large subunit n=1 Ta... 442 e-122 UniRef50_C6NSM4 NADH dehydrogenase I, B/C/D subunits n=1 Tax=Aci... 441 e-122 UniRef50_A0RMD1 NADH-quinone oxidoreductase subunit C/D n=5 Tax=... 435 e-120 UniRef50_B8I2P5 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 435 e-120 UniRef50_Q24ST8 Formate hydrogenlyase subunit 5 n=2 Tax=Desulfit... 430 e-119 UniRef50_Q0W6T4 [NiFe]-hydrogenase, large subunit (EchE-like) n=... 426 e-118 UniRef50_B2V8R2 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 419 e-115 UniRef50_D2RET0 NADH-quinone oxidoreductase, B subunit n=1 Tax=A... 415 e-114 UniRef50_Q64DY8 F420H2-quinone oxidoreductase 45 kD subunit n=8 ... 407 e-112 UniRef50_A8A9X2 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 ... 402 e-110 UniRef50_A1AUU6 Ech hydrogenase subunit E n=3 Tax=Bacteria RepID... 398 e-109 UniRef50_A7I7D0 NADH dehydrogenase (Ubiquinone), 30 kDa subunit ... 396 e-108 UniRef50_Q1IS59 NADH-quinone oxidoreductase subunit D 1 n=2 Tax=... 395 e-108 UniRef50_Q609T9 Hydrogenase subunit n=1 Tax=Methylococcus capsul... 392 e-107 UniRef50_Q0F384 Hydrogenase subunit n=1 Tax=Mariprofundus ferroo... 390 e-107 UniRef50_C5CEV3 NADH-ubiquinone oxidoreductase chain 49kDa n=1 T... 388 e-106 UniRef50_C9LVK3 Proton-translocating NADH-quinone oxidoreductase... 388 e-106 UniRef50_Q2K3U2 NADH-quinone oxidoreductase subunit D 2 n=7 Tax=... 387 e-106 UniRef50_C7NUN7 NADH dehydrogenase (Quinone) n=1 Tax=Halorhabdus... 387 e-106 UniRef50_C0Z770 NADH-quinone oxidoreductase chain D n=2 Tax=Baci... 385 e-105 UniRef50_B5YKI5 NADH-quinone oxidoreductase subunit D 1 n=12 Tax... 385 e-105 UniRef50_Q3ZW31 Hydrogenase, group 4, HycE subunit n=3 Tax=Dehal... 385 e-105 UniRef50_B1ZRT0 NADH-quinone oxidoreductase subunit D 1 n=16 Tax... 383 e-105 UniRef50_B5YL34 NADH-quinone oxidoreductase subunit D 2 n=1 Tax=... 383 e-104 UniRef50_Q2RJU4 NADH-quinone oxidoreductase subunit D n=94 Tax=F... 382 e-104 UniRef50_B2HHH7 Formate hydrogenase HycE n=3 Tax=Actinomycetales... 382 e-104 UniRef50_A8VSQ7 Diguanylate cyclase/phosphodiesterase with PAS/P... 382 e-104 UniRef50_Q2S5J0 NADH-quinone oxidoreductase subunit D n=5 Tax=Ba... 381 e-104 UniRef50_B9L172 NADH dehydrogenase I, D subunit n=1 Tax=Thermomi... 380 e-104 UniRef50_Q979M3 NADH dehydrogenase I chain D n=6 Tax=Thermoplasm... 380 e-103 UniRef50_A9B4Z7 NADH-quinone oxidoreductase subunit D 1 n=9 Tax=... 379 e-103 UniRef50_D1C6X3 NADH dehydrogenase I, D subunit n=1 Tax=Sphaerob... 378 e-103 UniRef50_C6A407 Membrane-bound hydrogenase MBH 1, subunit Mbh1L ... 377 e-103 UniRef50_B6YU98 Membrane bound hydrogenase, NiFe-hydrogenase lar... 376 e-102 UniRef50_B3VS74 NADH-ubiquinone oxidoreductase chain 49kDa n=4 T... 376 e-102 UniRef50_B8J7E4 NADH-ubiquinone oxidoreductase chain 49kDa n=14 ... 375 e-102 UniRef50_C1XJB2 NADH dehydrogenase subunit D n=1 Tax=Meiothermus... 374 e-102 UniRef50_Q7NI12 NAD(P)H-quinone oxidoreductase subunit H 1 n=3 T... 374 e-102 UniRef50_B3DZF5 Formate hydrogenlyase subunit 5 n=8 Tax=Bacteria... 374 e-102 UniRef50_B5Y915 EchE n=1 Tax=Coprothermobacter proteolyticus DSM... 373 e-102 UniRef50_B9L625 NADH-ubiquinone oxidoreductase n=3 Tax=Epsilonpr... 373 e-101 UniRef50_C6NX38 Ni,Fe-hydrogenase III large subunit n=1 Tax=Acid... 373 e-101 UniRef50_Q8U0Z6 Mbh12 membrane bound hydrogenase alpha (NADH deh... 372 e-101 UniRef50_O75306 NADH dehydrogenase [ubiquinone] iron-sulfur prot... 372 e-101 UniRef50_A5UXK3 NADH-quinone oxidoreductase subunit D 1 n=20 Tax... 372 e-101 UniRef50_C0QBF7 HyfG n=3 Tax=Bacteria RepID=C0QBF7_DESAH 372 e-101 UniRef50_B1W516 NADH-quinone oxidoreductase subunit D 1 n=24 Tax... 371 e-101 UniRef50_D0L1P0 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 371 e-101 UniRef50_B6AS24 Putative NADH-ubiquinone oxidoreductase, 49 kDa ... 371 e-101 UniRef50_Q2FTW4 Membrane bound hydrogenase subunit mbhL n=3 Tax=... 369 e-100 UniRef50_B5IS38 Respiratory-chain NADH dehydrogenase, 49 Kd subu... 368 e-100 UniRef50_A3DKH4 NADH-ubiquinone oxidoreductase, chain 49kDa n=2 ... 368 e-100 UniRef50_D2R5G7 NADH dehydrogenase (Quinone) n=2 Tax=Planctomyce... 368 e-100 UniRef50_P31895 Carbon monoxide-induced hydrogenase n=14 Tax=Bac... 367 e-100 UniRef50_C1D0H4 Putative NADH dehydrogenase (Quinone), subunit D... 366 1e-99 UniRef50_P56753 NAD(P)H-quinone oxidoreductase subunit H, chloro... 366 2e-99 UniRef50_C6A3Z3 Membrane-bound hydrogenase MBH 2, subunit Mbh2L ... 365 2e-99 UniRef50_C8XAS3 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 365 2e-99 UniRef50_B8DS05 NADH dehydrogenase (Quinone) n=7 Tax=Deltaproteo... 365 4e-99 UniRef50_Q2JFL7 NADH-quinone oxidoreductase subunit D n=81 Tax=B... 365 4e-99 UniRef50_Q1AVI6 NADH-quinone oxidoreductase subunit D n=1 Tax=Ru... 364 5e-99 UniRef50_C1TPP0 Ni,Fe-hydrogenase III large subunit n=2 Tax=Syne... 362 2e-98 UniRef50_Q6APF2 Related to hydrogenase, component E-formate hydr... 362 2e-98 UniRef50_B3E6C1 NADH-ubiquinone oxidoreductase chain 49kDa n=2 T... 362 2e-98 UniRef50_Q6MDR3 NADH-quinone oxidoreductase subunit D n=2 Tax=Pa... 362 3e-98 UniRef50_A0B812 F420H2 dehydrogenase subunit C n=6 Tax=Archaea R... 362 3e-98 UniRef50_A5GBN1 Ech hydrogenase subunit E n=20 Tax=cellular orga... 361 5e-98 UniRef50_Q4P4N9 Putative uncharacterized protein n=1 Tax=Ustilag... 360 6e-98 UniRef50_D2LAG1 NADH-ubiquinone oxidoreductase chain 49kDa n=1 T... 360 6e-98 UniRef50_Q0W3I1 Ech hydrogenase, subunit E n=2 Tax=Euryarchaeota... 359 2e-97 UniRef50_C6PUG2 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 359 2e-97 UniRef50_B1ZUJ2 NADH-quinone oxidoreductase subunit D 2 n=5 Tax=... 358 3e-97 UniRef50_Q1QP34 NADH-quinone oxidoreductase subunit D 1 n=9 Tax=... 358 4e-97 UniRef50_C7N626 Ech hydrogenase subunit E n=25 Tax=cellular orga... 356 9e-97 UniRef50_C7I0C0 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 353 7e-96 UniRef50_B4SJH6 NADH-quinone oxidoreductase subunit D 1 n=211 Ta... 353 7e-96 UniRef50_Q30PI1 NADH-quinone oxidoreductase subunit D n=45 Tax=E... 353 1e-95 UniRef50_C7LSU9 NADH-ubiquinone oxidoreductase chain 49kDa n=1 T... 352 2e-95 UniRef50_UPI0001C31275 NADH dehydrogenase I, D subunit n=1 Tax=C... 351 3e-95 UniRef50_Q5P2H0 Subunit of formate hydrogenlyase-like membrane c... 350 6e-95 UniRef50_A9G9T3 NADH-quinone oxidoreductase subunit D 2 n=5 Tax=... 350 6e-95 UniRef50_UPI00016C492D NADH dehydrogenase subunit D n=1 Tax=Gemm... 350 6e-95 UniRef50_D2LH96 NADH-ubiquinone oxidoreductase chain 49kDa n=1 T... 348 3e-94 UniRef50_D2L9H0 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 347 5e-94 UniRef50_D1YVS8 Ech hydrogenase subunit E n=1 Tax=Methanocella p... 346 9e-94 UniRef50_Q2WAW4 Ni,Fe-hydrogenase III large subunit n=11 Tax=Alp... 346 2e-93 UniRef50_D2PDB9 NADH dehydrogenase (Ubiquinone) n=10 Tax=Sulfolo... 345 3e-93 UniRef50_D2R4P3 NADH dehydrogenase (Quinone) n=3 Tax=Planctomyce... 344 5e-93 UniRef50_A1KEQ8 Possible formate hydrogenase hycQ (FHL) n=14 Tax... 344 5e-93 UniRef50_A3ZL03 NADH dehydrogenase (Ubiquinone) n=1 Tax=Blastopi... 343 7e-93 UniRef50_C6HVM5 Putative hydrogenase-3 subunit (HycE) n=1 Tax=Le... 343 1e-92 UniRef50_C9RKY1 NADH dehydrogenase (Quinone) n=1 Tax=Fibrobacter... 343 1e-92 UniRef50_B9L8U2 Ech Hydrogenase, Subunit n=3 Tax=Epsilonproteoba... 343 1e-92 UniRef50_C1XWY7 Ni,Fe-hydrogenase III large subunit n=1 Tax=Meio... 341 4e-92 UniRef50_A6LMC4 NADH-quinone oxidoreductase subunit D n=14 Tax=c... 340 9e-92 UniRef50_A5FKI7 NADH-quinone oxidoreductase subunit D n=17 Tax=B... 340 1e-91 UniRef50_Q67P19 NADH-quinone oxidoreductase subunit D 1 n=1 Tax=... 339 2e-91 UniRef50_A7C1S4 NADH-ubiquinone oxidoreductase subunit n=3 Tax=c... 339 2e-91 UniRef50_A1ALP2 NADH-quinone oxidoreductase subunit D n=1 Tax=Pe... 339 2e-91 UniRef50_B1VSH7 NADH-quinone oxidoreductase subunit D 2 n=6 Tax=... 337 9e-91 UniRef50_A7H9V5 NADH-quinone oxidoreductase subunit D 2 n=8 Tax=... 336 2e-90 UniRef50_A1RZ50 NADH dehydrogenase (Ubiquinone) n=6 Tax=Archaea ... 335 3e-90 UniRef50_Q3JMD7 Hydrogenase subunit n=33 Tax=Burkholderia RepID=... 335 4e-90 UniRef50_A6DAC0 Carbon monoxide-induced hydrogenase, large subun... 333 8e-90 UniRef50_B3T914 Putative Respiratory-chain NADH dehydrogenase, 4... 332 2e-89 UniRef50_B3TC54 Putative Respiratory-chain NADH dehydrogenase, 4... 332 2e-89 UniRef50_Q57935 Uncharacterized protein MJ0515 n=17 Tax=Euryarch... 332 3e-89 UniRef50_C6X0Z4 NADH-ubiquinone oxidoreductase chain D n=1 Tax=F... 331 6e-89 UniRef50_C1AB36 NADH-quinone oxidoreductase chain D n=1 Tax=Gemm... 330 9e-89 UniRef50_C2BU22 NADH dehydrogenase (Quinone) n=4 Tax=cellular or... 330 1e-88 UniRef50_Q21TB4 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 ... 328 3e-88 UniRef50_A9A347 NADH dehydrogenase (Quinone) n=3 Tax=Thaumarchae... 328 3e-88 UniRef50_C7DI97 NADH dehydrogenase (Quinone) n=1 Tax=Candidatus ... 328 3e-88 UniRef50_B3ES55 NADH-quinone oxidoreductase subunit D n=19 Tax=B... 327 5e-88 UniRef50_Q8TY43 Ni,Fe-hydrogenase III large subunit n=1 Tax=Meth... 327 6e-88 UniRef50_Q58433 Uncharacterized protein MJ1027 n=12 Tax=Methanoc... 326 2e-87 UniRef50_A4XCQ7 NADH-quinone oxidoreductase subunit D 2 n=22 Tax... 324 7e-87 UniRef50_B8IYV5 NAD-dependent dehydrogenase subunit n=1 Tax=Desu... 323 1e-86 UniRef50_UPI0001C42022 energy-converting hydrogenase B subunit N... 321 4e-86 UniRef50_A0LSU1 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 ... 321 6e-86 UniRef50_A8MBT0 NADH dehydrogenase (Quinone) n=1 Tax=Caldivirga ... 319 1e-85 UniRef50_A6UVJ6 Hydrogenase, component E-formate hydrogenlyase s... 319 2e-85 UniRef50_A3DM94 Membrane bound protein complex subunit mbxL n=2 ... 317 7e-85 UniRef50_Q2NED9 EhbN n=5 Tax=Methanobacteriaceae RepID=Q2NED9_METST 313 1e-83 UniRef50_A9FF67 NAD-dependent dehydrogenase subunit n=1 Tax=Sora... 312 3e-83 UniRef50_A9BJL6 NADH dehydrogenase (Quinone) n=3 Tax=Thermotogac... 312 3e-83 UniRef50_A4WMP9 NADH dehydrogenase (Ubiquinone) n=5 Tax=Thermopr... 311 3e-83 UniRef50_P15689 NADH-ubiquinone oxidoreductase 49 kDa subunit n=... 310 1e-82 UniRef50_B1YB08 NADH dehydrogenase (Quinone) n=5 Tax=Thermoprote... 306 1e-81 UniRef50_A3CUR5 NADH dehydrogenase (Ubiquinone) n=3 Tax=Methanom... 306 2e-81 UniRef50_A0L9R4 Membrane bound protein complex subunit mbxL n=1 ... 300 1e-79 UniRef50_A6Q6W4 Ni-Fe hydrogenase, large subunit HycE n=3 Tax=Ep... 296 2e-78 UniRef50_UPI00019012E4 NADH dehydrogenase subunit D n=1 Tax=Myco... 291 5e-77 UniRef50_C6WGH3 NADH dehydrogenase (Quinone) n=1 Tax=Actinosynne... 283 1e-74 UniRef50_D1LDT9 NADH dehydrogenase subunit 7 (Fragment) n=2 Tax=... 283 1e-74 UniRef50_Q0BPG8 Formate hydrogenlyase subunit 5 n=1 Tax=Granulib... 280 8e-74 UniRef50_A5FW46 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 ... 276 1e-72 UniRef50_C0SF51 NADH-ubiquinone oxidoreductase 49 kDa subunit n=... 273 2e-71 UniRef50_B0SCU7 Metal (Ni/Fe) hydrogenase, large subunit n=2 Tax... 270 1e-70 UniRef50_A5UWP3 NADH-ubiquinone oxidoreductase, chain 49kDa n=2 ... 266 2e-69 UniRef50_A9B5Q0 NADH-ubiquinone oxidoreductase chain 49kDa n=1 T... 260 9e-68 UniRef50_Q5DUX5 NADH-ubiquinone oxidoreductase 49 kDa subunit n=... 259 3e-67 UniRef50_C7JEU8 NADH-ubiquinone oxidoreductase 49kDa subunit n=8... 254 6e-66 UniRef50_D1Y9R2 Respiratory-chain NADH dehydrogenase, 49 Kd subu... 246 3e-63 UniRef50_D1HPS0 Whole genome shotgun sequence of line PN40024, s... 241 5e-62 UniRef50_Q056K8 Metal (Ni/Fe) hydrogenase, large subunit n=4 Tax... 241 8e-62 UniRef50_Q978D6 Formate hydrogenlyase subunit 3 n=1 Tax=Thermopl... 237 1e-60 UniRef50_B5ZIZ9 Ni Fe-hydrogenase III large subunit-like protein... 236 2e-60 UniRef50_UPI000186E11F NADH-ubiquinone oxidoreductase 49 kDa sub... 230 1e-58 UniRef50_P21301 NADH-ubiquinone oxidoreductase 49 kDa subunit ho... 217 1e-54 UniRef50_P19496 Coenzyme F420 hydrogenase subunit alpha n=2 Tax=... 216 2e-54 UniRef50_A5UMA1 Coenzyme F420-reducing hydrogenase, alpha subuni... 214 1e-53 UniRef50_B1I3L1 Nickel-dependent hydrogenase, large subunit n=6 ... 212 4e-53 UniRef50_D2PJN4 Formate hydrogenlyase subunit 5 (HycE) n=10 Tax=... 211 4e-53 UniRef50_Q5FU77 Putative uncharacterized protein n=1 Tax=Glucono... 209 2e-52 UniRef50_P80489 Coenzyme F420 hydrogenase subunit alpha n=11 Tax... 209 2e-52 UniRef50_Q00390 Coenzyme F420 hydrogenase subunit alpha n=9 Tax=... 206 2e-51 UniRef50_UPI000038DF6E Ni,Fe-hydrogenase III large subunit n=1 T... 205 4e-51 UniRef50_Q60338 Coenzyme F420 hydrogenase subunit alpha n=15 Tax... 205 4e-51 UniRef50_A5I2W3 Hydrogenase large subunit n=15 Tax=Clostridium R... 204 8e-51 UniRef50_Q00404 F420-non-reducing hydrogenase vhc subunit A n=10... 202 3e-50 UniRef50_A6DBU3 Nickel-dependent hydrogenase, large subunit n=1 ... 201 6e-50 UniRef50_C1A0H7 Putative NiFe hydrogenase alpha subunit n=2 Tax=... 201 6e-50 UniRef50_Q6L0U1 Formate hydrogenlyase subunit 5 n=1 Tax=Picrophi... 200 1e-49 UniRef50_Q0W6J7 Coenzyme F420-non-reducing hydrogenase (Methyl v... 199 2e-49 UniRef50_B1I619 Hydrogen:quinone oxidoreductase n=2 Tax=Clostrid... 199 3e-49 UniRef50_Q2LYD7 Nickel-dependent hydrogenase n=1 Tax=Syntrophus ... 198 4e-49 UniRef50_Q1WLV6 Mitochondrial NADH:ubiquinone oxidoreductase 49k... 198 4e-49 UniRef50_Q58592 F420-non-reducing hydrogenase vhu subunit A n=22... 198 4e-49 UniRef50_B1L3Q0 Coenzyme F420-reducing hydrogenase, alpha subuni... 198 4e-49 UniRef50_Q50783 F420-non-reducing hydrogenase subunit A n=6 Tax=... 198 6e-49 UniRef50_B5YHQ8 Hydrogenase/sulfur reductase, alpha subunit n=2 ... 197 7e-49 UniRef50_C4PZT7 NADH-ubiquinone oxidoreductase fe-s protein 2 (N... 195 3e-48 UniRef50_UPI0001C41F73 methyl viologen-reducing hydrogenase alph... 195 4e-48 UniRef50_UPI0001C16F92 Nickel-dependent hydrogenase, large subun... 195 4e-48 UniRef50_A8ZNU6 Hydrogenase large subunit HoxH n=62 Tax=Bacteria... 194 1e-47 UniRef50_C7NU24 Nickel-dependent hydrogenase large subunit n=1 T... 193 1e-47 UniRef50_O66988 Hydrogenase large subunit n=1 Tax=Aquifex aeolic... 193 1e-47 UniRef50_B8HJR0 Coenzyme F420 hydrogenase n=14 Tax=Bacteria RepI... 193 1e-47 UniRef50_B5IEA3 Nickel-dependent hydrogenase superfamily n=3 Tax... 193 1e-47 UniRef50_B5EQ52 Nickel-dependent hydrogenase large subunit n=10 ... 193 2e-47 UniRef50_B9L8N1 Nickel-dependent hydrogenase, large subunit n=1 ... 192 2e-47 UniRef50_B6YTV8 Coenzyme F420 hydrogenase alpha subunit n=1 Tax=... 192 4e-47 UniRef50_A3Q228 Nickel-dependent hydrogenase, large subunit n=7 ... 191 5e-47 UniRef50_C0QP83 Nickel-dependent hydrogenase, large subunit n=2 ... 191 5e-47 UniRef50_Q3AU04 Hydrogenase/sulfur reductase, alpha subunit n=10... 191 7e-47 UniRef50_C5A2R8 Coenzyme F420 hydrogenase subunit alpha (FrhA) n... 190 1e-46 UniRef50_Q2J4F0 Nickel-dependent hydrogenase, large subunit n=4 ... 189 2e-46 UniRef50_A8UU10 Nickel-dependent hydrogenase, large subunit n=1 ... 186 2e-45 UniRef50_B6BMW7 Nickel-dependent hydrogenase, large subunit n=1 ... 186 2e-45 UniRef50_B8GAR8 NADH-ubiquinone oxidoreductase chain 49kDa n=3 T... 186 2e-45 UniRef50_Q7G6A6 NAD, putative n=3 Tax=Magnoliophyta RepID=Q7G6A6... 185 4e-45 UniRef50_Q24X55 Hup-type Ni,Fe-hydrogenase large subunit n=6 Tax... 184 7e-45 UniRef50_B2TM83 [Ni/Fe] hydrogenase, large subunit n=2 Tax=Clost... 184 1e-44 UniRef50_C8X545 Nickel-dependent hydrogenase large subunit n=1 T... 184 1e-44 UniRef50_Q0W6U1 Coenzyme F420-non-reducing hydrogenase (Methyl v... 183 1e-44 UniRef50_A6Q3L3 Ni-Fe hydrogenase, large subunit HupV n=1 Tax=Ni... 183 1e-44 UniRef50_C0GED6 Nickel-dependent hydrogenase large subunit n=1 T... 181 5e-44 UniRef50_C7NPL2 Nickel-dependent hydrogenase large subunit n=1 T... 181 6e-44 UniRef50_D1Z1J2 F420-non-reducing hydrogenase subunit A n=1 Tax=... 180 8e-44 UniRef50_A7BI76 Ni,Fe-hydrogenase large subunit n=1 Tax=Hydrogen... 180 1e-43 UniRef50_B3E0W8 Coenzyme F420-reducing hydrogenase, alpha subuni... 180 2e-43 UniRef50_B9M7G0 Nickel-dependent hydrogenase large subunit n=5 T... 179 3e-43 UniRef50_B5I9E7 Ni Fe-hydrogenase III large subunit-like protein... 179 3e-43 UniRef50_UPI0001B5108B coenzyme F420-reducing hydrogenase, alpha... 179 3e-43 UniRef50_C8QXK0 Nickel-dependent hydrogenase large subunit n=1 T... 178 5e-43 UniRef50_Q30QL7 Nickel-dependent hydrogenase, large subunit n=1 ... 178 6e-43 UniRef50_C0QPV5 Hydrogenase large subunit n=2 Tax=Hydrogenotherm... 178 6e-43 UniRef50_D1ICJ9 Whole genome shotgun sequence of line PN40024, s... 177 8e-43 UniRef50_O28899 Methylviologen-reducing hydrogenase, subunit alp... 177 9e-43 UniRef50_Q24ZF8 Hup-type Ni,Fe-hydrogenase large subunit n=2 Tax... 177 9e-43 UniRef50_A0L610 Nickel-dependent hydrogenase, large subunit n=1 ... 177 1e-42 UniRef50_C6A4M9 NiFe hydrogenase II, catalytic subunit alpha n=4... 176 2e-42 UniRef50_C6YT64 Predicted protein n=2 Tax=Francisella philomirag... 175 6e-42 UniRef50_C8WGI5 Nickel-dependent hydrogenase large subunit n=1 T... 174 9e-42 UniRef50_B4U5P5 Nickel-dependent hydrogenase large subunit n=1 T... 173 2e-41 UniRef50_P22320 NAD-reducing hydrogenase hoxS subunit beta n=5 T... 171 6e-41 UniRef50_A8UUB0 Hydrogenase large subunit n=1 Tax=Hydrogenivirga... 171 6e-41 UniRef50_B6YU79 Cytosolic NiFe-hydrogenase, alpha subunit n=11 T... 170 1e-40 UniRef50_B3E9J3 Nickel-dependent hydrogenase large subunit n=5 T... 170 2e-40 UniRef50_A0LQC1 F420-non-reducing hydrogenase subunit A n=5 Tax=... 169 2e-40 UniRef50_Q9XBW8 HoxH n=1 Tax=Rhodobacter capsulatus RepID=Q9XBW8... 169 2e-40 UniRef50_C1SPM3 Ni,Fe-hydrogenase I large subunit n=1 Tax=Denitr... 169 2e-40 UniRef50_A6QAV5 Ni-Fe hydrogenase, large subunit HupV n=1 Tax=Su... 169 4e-40 Sequences not found previously or not previously below threshold: >UniRef50_P16431 Formate hydrogenlyase subunit 5 n=104 Tax=Bacteria RepID=HYCE_ECOLI Length = 569 Score = 613 bits (1581), Expect = e-174, Method: Composition-based stats. Identities = 569/569 (100%), Positives = 569/569 (100%) Query: 1 MSEEKLGQHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVL 60 MSEEKLGQHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVL Sbjct: 1 MSEEKLGQHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVL 60 Query: 61 FGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRD 120 FGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRD Sbjct: 61 FGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRD 120 Query: 121 MYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNN 180 MYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNN Sbjct: 121 MYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNN 180 Query: 181 VVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 240 VVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV Sbjct: 181 VVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 240 Query: 241 CGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG 300 CGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG Sbjct: 241 CGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG 300 Query: 301 FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELV 360 FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELV Sbjct: 301 FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELV 360 Query: 361 DVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVH 420 DVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVH Sbjct: 361 DVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVH 420 Query: 421 SEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGD 480 SEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGD Sbjct: 421 SEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGD 480 Query: 481 DIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTV 540 DIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTV Sbjct: 481 DIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTV 540 Query: 541 VDVRKKKSKVVPYKELERYSIERKNSPLK 569 VDVRKKKSKVVPYKELERYSIERKNSPLK Sbjct: 541 VDVRKKKSKVVPYKELERYSIERKNSPLK 569 >UniRef50_B6YTW8 Hydrogenase 4, component G or formate hydrogen lyase, subunit 5 n=5 Tax=Thermococcaceae RepID=B6YTW8_THEON Length = 584 Score = 571 bits (1472), Expect = e-161, Method: Composition-based stats. Identities = 245/566 (43%), Positives = 345/566 (60%), Gaps = 10/566 (1%) Query: 5 KLGQHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQG---GWLSVLF 61 K+ + YL + E F + D +Q +TV+ LPE+V + LS + Sbjct: 24 KVTREYLDEIIEKFGEKIRDVKQAAYNQWIITVEREDLPEIVLYFLNHPEWKETQLSSMV 83 Query: 62 GNDERKLNGHYAVYYVLSMEKG-TKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRD 120 DER LNG +++ Y LS+ ++ VR + + P + S+ + A W ERE + Sbjct: 84 ATDERPLNGKFSITYWLSVNGKAGDFYLGVRAYLPEDDPRFTSIAAKHRGANWYEREAME 143 Query: 121 MYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNN 180 M GL G PD RRLVLPDDWP +YPLRKD + + + K Sbjct: 144 MLGLTAEGHPDPRRLVLPDDWPSCVYPLRKDF------HYSNSPPGEKFYPYKEPKKDEI 197 Query: 181 VVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 240 VVP GP HV +E HFRL+V GE I D DYR FY HRG+EK++E R+ Y++V F+++R+ Sbjct: 198 VVPYGPYHVALEEAAHFRLYVKGETITDVDYRGFYAHRGIEKISEGRLTYDQVCFIAERI 257 Query: 241 CGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG 300 CGICG HSTAY +VENA GI+VPERA+ IR I+LE+ERLHSHLLN G+ H G+D G Sbjct: 258 CGICGCTHSTAYCQAVENAGGIEVPERAEYIRTIVLEIERLHSHLLNFGIVSHLVGYDYG 317 Query: 301 FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELV 360 FM+ +R+RE M +AE LTG RKTYG+ L+GG+RRDLL+ + ++++ E ELV Sbjct: 318 FMKAWRIREHVMWLAERLTGNRKTYGMLLVGGVRRDLLEYRKSLIEDVLKKIKTEFSELV 377 Query: 361 DVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVH 420 D +ST +R G+G L ++A+++ GP+ R SG D R DHP+ Y L +V Sbjct: 378 DEAISTSTFVKRLEGVGVLPYKVAKEWDVDGPLGRGSGRDFDVRRDHPYAAYKYLDFKVP 437 Query: 421 SEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGD 480 + DV++R VRI EV+ ++ +I+ LD +PGG ++ E P+ A+G EAPRG+ Sbjct: 438 VYKEGDVLARALVRIEEVFESIWIIEQALDQMPGGDILAEYKEIPPYSEAIGMTEAPRGE 497 Query: 481 DIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTV 540 +IH+ MTG+N K+YR+R RAATY N P + M+RG T++DAPLI+ S+DPCYSCT+R+ V Sbjct: 498 NIHYVMTGENNKVYRYRARAATYNNLPAVPDMMRGYTIADAPLIVASIDPCYSCTERVQV 557 Query: 541 VDVRKKKSKVVPYKELERYSIERKNS 566 VDV K +V+ E + SI+ Sbjct: 558 VDVESGKVRVLSETEFNKLSIKASRR 583 >UniRef50_A1RWL3 NADH dehydrogenase (Ubiquinone), 30 kDa subunit n=2 Tax=Archaea RepID=A1RWL3_THEPD Length = 567 Score = 561 bits (1445), Expect = e-158, Method: Composition-based stats. Identities = 269/559 (48%), Positives = 379/559 (67%), Gaps = 7/559 (1%) Query: 8 QHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVLFGNDERK 67 + + + G++L DQL + V+ LPEV ++YY+ GG+LS + G+DER Sbjct: 6 ERLEEKIRKEIGGLLLGVEKPYPDQLYLYVERTKLPEVCSYVYYELGGFLSTMAGSDERS 65 Query: 68 LNGHYAVYYVLS----MEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYG 123 L+G Y +YYV S E G K W+ V + + ++ SVTP++PAA W EREVRD+ G Sbjct: 66 LHGAYRLYYVFSIEEGYEDGKKPWVVVVTNIPPHDTKFSSVTPKIPAASWYEREVRDLLG 125 Query: 124 LIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVP 183 L+P PD RRLVLPDDWP+ ++PLRK+ + P + A EF + + VP Sbjct: 126 LVPENHPDPRRLVLPDDWPEGVHPLRKEFTYTERPP---SVARKCEFRPSVEGEGIMQVP 182 Query: 184 IGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGI 243 IGP+H +DEPG FR+F+DGE ++D DYR+FYVHRG+EKLAE+R+ YN+V F+++R+CGI Sbjct: 183 IGPVHAVADEPGQFRVFLDGEKVVDVDYRMFYVHRGIEKLAESRLTYNQVPFIAERICGI 242 Query: 244 CGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQ 303 CG+AHS AY +VE A+GI+VPERA IR ++LEVERLHSHLLNLGLACH GFD GFM Sbjct: 243 CGYAHSCAYCQAVEQALGIEVPERALYIRTLMLEVERLHSHLLNLGLACHLAGFDWGFMA 302 Query: 304 FFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVL 363 FF+ RE M MAE+LTG RKTYG+N++GG+RRD+ +D + ++ +++ +E + ++D + Sbjct: 303 FFKAREKVMYMAELLTGGRKTYGMNVVGGVRRDITEDRAKKALEILKEVEKEYKAVLDAV 362 Query: 364 LSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQ 423 LST + R +G L ++AR S VGP+ R S RDTR DHP+ Y + +V Sbjct: 363 LSTSTLVSRAKDVGVLPRDVARKVSVVGPVARGSSIKRDTRKDHPYAAYSEVDFKVPVHS 422 Query: 424 GCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIH 483 DV++RL VR E + +++I L+N+PGGP+ E Y P+ LG+ EAPRG+D+H Sbjct: 423 EGDVLARLSVRAEETFETISIIRQVLENMPGGPIQAEVKEYRPYARGLGYVEAPRGEDVH 482 Query: 484 WSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVVDV 543 + +TG + K+YRWR RA+TY NWP + YM RG T++D PLIIGS+DPCYSCT+R+ VVDV Sbjct: 483 FVITGPHSKVYRWRVRASTYNNWPAIPYMCRGYTLADLPLIIGSIDPCYSCTERVIVVDV 542 Query: 544 RKKKSKVVPYKELERYSIE 562 + +++V PY+ L S + Sbjct: 543 KSGRTRVFPYEYLVSLSRK 561 >UniRef50_P77329 Hydrogenase-4 component G n=130 Tax=Bacteria RepID=HYFG_ECOLI Length = 555 Score = 549 bits (1416), Expect = e-155, Method: Composition-based stats. Identities = 399/568 (70%), Positives = 466/568 (82%), Gaps = 17/568 (2%) Query: 2 SEEKLGQHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVLF 61 S G+ LAAL FPG VLD QT +Q+T+TVK+N LP+VV++LYY+ GWL VLF Sbjct: 5 SSSNRGEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLF 64 Query: 62 GNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDM 121 GNDER LNGHYAVYY LSME KCWI V+ VDA+ E+PSVTPRVPAAVWGERE+RDM Sbjct: 65 GNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDM 124 Query: 122 YGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNV 181 YGLIPVGLPD+RRLVLPDDWP++++PLRKD+MDYR RP PTTD+ETY FINE V Sbjct: 125 YGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDA-RV 183 Query: 182 VPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 241 +P+GPLH+TSDEPGHFRLFVDGE I+DADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC Sbjct: 184 IPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 243 Query: 242 GICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGF 301 GICGFAHS AYT SVENA+GI+VP+RA IR+ILLEVERLHSHLLNLGL+CHF GFD+GF Sbjct: 244 GICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGF 303 Query: 302 MQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVD 361 MQFFRVRE SM MAE+L G+RKTYGLNLIGG+RRD+LK+ +QT +L ++MR +V ELV+ Sbjct: 304 MQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVE 363 Query: 362 VLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHS 421 +LL+TPNMEQRT GIG LD +IA RD R DHP+ YG +P + + Sbjct: 364 MLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKTLFT 407 Query: 422 EQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDD 481 G DV SR+ VR+ E + +L M+++ LDN+P PL+ EGF+Y PH FALGF EAPRG+D Sbjct: 408 FTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGED 467 Query: 482 IHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVV 541 +HWSM GDNQKL+RWRCRAATYANWP LRYMLRGNTVSDAPLIIGSLDPCYSCTDR+T+V Sbjct: 468 VHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTLV 527 Query: 542 DVRKKKSKVVPYKELERYSIERKNSPLK 569 DVRK++SK VPYKE+ERY I+R SPLK Sbjct: 528 DVRKRQSKTVPYKEIERYGIDRNRSPLK 555 >UniRef50_B6YWP8 Hydrogenase 4, subunit 5 n=1 Tax=Thermococcus onnurineus NA1 RepID=B6YWP8_THEON Length = 540 Score = 539 bits (1390), Expect = e-152, Method: Composition-based stats. Identities = 218/522 (41%), Positives = 318/522 (60%), Gaps = 7/522 (1%) Query: 27 WQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKC 86 V + + E+ L+ + + S G DER +NG +A+Y++ + + + Sbjct: 13 EHNDKMTVAEVGASNIREIARALFERGYYY-SSGMGVDERPINGRFAMYHIFNCDTEGR- 70 Query: 87 WITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELY 146 ++ +++ PE PS+TP + A W ERE DM G++ G P RL+LPDDWP+ +Y Sbjct: 71 YVVLKITSPEGSPEVPSITPVIKGAEWSEREAMDMLGIVFSGHPKPERLILPDDWPEGVY 130 Query: 147 PLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENI 206 PLRKD ++ K +P+GP H + EP +F L+V G+ + Sbjct: 131 PLRKDFPYNKKL-----PPSKPIEKEREHKKDVMEIPLGPYHPSLHEPEYFELYVKGDKV 185 Query: 207 IDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPE 266 +DA+YR F++HRGMEKLAE+RM N++ FL++R+CGICG HS AY +VE+A GI VPE Sbjct: 186 VDAEYRGFHIHRGMEKLAESRMTINQIPFLAERICGICGCTHSAAYCQAVEDAAGIYVPE 245 Query: 267 RAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYG 326 RAQ IR I+LEVER+HSHLL G+ CH GFDSGFM +R RE M +AE++TG RKTYG Sbjct: 246 RAQYIRTIMLEVERIHSHLLWFGVVCHLLGFDSGFMHIWRAREYIMDIAELITGNRKTYG 305 Query: 327 LNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARD 386 +N++GG+RRD+ +D +T +L + +E +E++D + + +R G+G L + AR+ Sbjct: 306 INIVGGVRRDITEDKKEKTLKLLDMVEKESREVLDNIAEMKELRERMEGVGVLPKKEARE 365 Query: 387 FSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMID 446 VGPM R+SG D R DHP+ Y L +V + DV +R VR E++ + NMI Sbjct: 366 IGVVGPMARSSGIDTDVRRDHPYAAYKDLDFKVPVYKEGDVFARFLVRYEEIFESFNMIR 425 Query: 447 YGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANW 506 L+N+P G L+ + + P + +G EAPRG++IH +T +YRW RAATY N Sbjct: 426 QALENMPPGELINDEYEIPPFKLGIGVTEAPRGENIHAVITWGENMIYRWHPRAATYNNL 485 Query: 507 PTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVVDVRKKKS 548 P + MLRGN V+DAPLII S+DPC+SCTD ++++D K Sbjct: 486 PAVPIMLRGNDVADAPLIIASIDPCFSCTDHVSIIDSESGKI 527 >UniRef50_Q2RXM4 NADH-ubiquinone oxidoreductase n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RXM4_RHORT Length = 561 Score = 534 bits (1375), Expect = e-150, Method: Composition-based stats. Identities = 213/554 (38%), Positives = 321/554 (57%), Gaps = 2/554 (0%) Query: 8 QHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVLFGNDERK 67 Q L +N FPG V D+L + ++ + +++ G L D Sbjct: 5 QTILDDINARFPGCVTRGLAPQPDRLYLRTTTEHIRTLAAYVFNDLKGRLVTGVCTDMGP 64 Query: 68 LNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPV 127 + G Y + Y S++ +T+ D P+ P++T +P A W ERE DM G++ Sbjct: 65 VTGEYDIIYAFSLD-AEGILLTLTEPTDPKDPKVPTLTDLIPGADWHERENYDMLGVVAE 123 Query: 128 GLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPL 187 G P+ RRL+L +DWP++L+P+RKD + +P T + K ++ +GP Sbjct: 124 GHPNPRRLLLSEDWPEDLFPMRKDFP-HDFKPPKAEKITTPLRDPLGNESKATIISVGPF 182 Query: 188 HVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFA 247 T DEP +FRLF +GE II +DYR F+ HRG+EKL++T + YN+V F+++RVCGICGF Sbjct: 183 FPTLDEPAYFRLFCEGEEIIGSDYRGFFSHRGIEKLSDTVLDYNQVPFMAERVCGICGFV 242 Query: 248 HSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRV 307 HS Y +VE+A GI++P RA+ IR+I++E+ERLHSHLL LGLA H+ GFD+ MQ +R+ Sbjct: 243 HSACYCMAVEDAAGIEIPPRAKYIRSIMMELERLHSHLLWLGLAGHYLGFDTVLMQSWRI 302 Query: 308 RETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTP 367 RE M + E +TG RKTYG+NL+GG+RRDL + ++ E +EL+ + Sbjct: 303 REPIMWLVEEITGNRKTYGMNLVGGVRRDLDSAICDKIMAAVTKIGIECEELISAVAGDE 362 Query: 368 NMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDV 427 +++ R V +G L E AR VGP RASG D RAD+P+ + L + +G D+ Sbjct: 363 SLKMRMVKVGVLSHEDARGICVVGPTARASGVHIDARADYPYAAFPDLDFKPSFHEGGDI 422 Query: 428 ISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMT 487 +R VR++EV +++++I + LP G +M R G AEAPRG+ +H+ T Sbjct: 423 WARTLVRVDEVRSSVDLIKQMITKLPEGEIMAGFGPIPAWREGYGIAEAPRGECVHYVQT 482 Query: 488 GDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVVDVRKKK 547 G + + YRWR RAATY + ML+G ++ D P+IIGS+DPC+SCT+R+ VD + K Sbjct: 483 GKDNRPYRWRVRAATYPQLQAVPLMLKGMSIGDFPIIIGSIDPCFSCTERVLTVDTKSKA 542 Query: 548 SKVVPYKELERYSI 561 + K+L + Sbjct: 543 IRTYTEKDLLALTR 556 >UniRef50_B5YKR2 Hydrogenase-4 component G n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKR2_THEYD Length = 541 Score = 530 bits (1365), Expect = e-149, Method: Composition-based stats. Identities = 211/535 (39%), Positives = 321/535 (60%), Gaps = 7/535 (1%) Query: 22 VLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVLFGNDERKLNGHYAVYYVLSME 81 + D T + L V K + + EV + L QG + L D + Y S+ Sbjct: 11 ITDKVETTDENLIVYSKPSQIKEVAKLL-VMQGARFAHLTAIDFINQKNQIELNYFFSLI 69 Query: 82 KGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDW 141 + + V++ ++A++ S++ +PA +W ERE D++G+ G PD RRLVLPD+W Sbjct: 70 DDS-MNVIVKIPLEASELSISSISEIIPAVIWSERECNDLFGINFEGHPDPRRLVLPDNW 128 Query: 142 PDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFV 201 P E++PLRK+ + P A + V+PIGP + + +EP +FRL V Sbjct: 129 PQEVHPLRKNFSYNSKPPESKQPAPLKKPEEGKT-----VIPIGPFYPSLEEPAYFRLIV 183 Query: 202 DGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMG 261 DGE I D DYR FYVHRG+EKLAE+ + Y ++ FL++R+CGICGF HS AY +VE A G Sbjct: 184 DGEEIADFDYRGFYVHRGIEKLAESVLNYQQIPFLAERICGICGFVHSCAYCQAVEKAAG 243 Query: 262 IQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGA 321 I++P RA+ IR++ LE+ERLHSHLL +GLA H GFD+ FMQ +R+RE M + EI+TG Sbjct: 244 IEIPLRAKFIRSLFLELERLHSHLLWVGLAAHIVGFDTLFMQAWRIREPVMYICEIITGN 303 Query: 322 RKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDP 381 RKTYG+N++GG+ D+ + ++ Q+ +EV+EL +++L ++ R +G L Sbjct: 304 RKTYGINIVGGVTIDVHNQHLKDIDKVISQIEKEVRELREIILDDEVIQLRFKNVGVLKY 363 Query: 382 EIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTA 441 + A+ + GP+ R SG D R + P+ Y +L + + + DV +R VR+ E+ + Sbjct: 364 DDAKKYCVCGPVARGSGINIDMRTNFPYAAYPMLNIRIPLNKSGDVWARTIVRLEEILIS 423 Query: 442 LNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAA 501 +N+I L+N+P GP ++ P + A+ + EAPRG H+ MTG + YRW RA Sbjct: 424 INIIRQILENIPEGPTSIKISKIEPWKEAVSYIEAPRGQLFHYVMTGPEGRPYRWSVRAP 483 Query: 502 TYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVVDVRKKKSKVVPYKEL 556 +Y N+ L ML+G +++DAPLIIGS+DPC+SCT+R +VD++ KV +EL Sbjct: 484 SYQNYQALSVMLKGASIADAPLIIGSIDPCFSCTERYEIVDLKTNSIKVYTAEEL 538 >UniRef50_C5A3D4 Formate hydrogenlyase I subunit F (Mhy1F) n=2 Tax=Thermococcus RepID=C5A3D4_THEGJ Length = 601 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 226/566 (39%), Positives = 340/566 (60%), Gaps = 17/566 (3%) Query: 11 LAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQG---GWLSVLFGNDERK 67 L EAF + + T Q + LP+ V + + LS G DER Sbjct: 40 LKEFYEAFKEHIRECKRMTYGQYMFVIDREVLPDAVLWWHNHPEFKETHLSTAVGTDERP 99 Query: 68 LNGHYAVYYVLSME-----KGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMY 122 LNG + L+++ W+ ++ + A+ P +PSV ++PAA+W EREV+D+ Sbjct: 100 LNGKFVYMPFLNVQVEPQNMDENYWVFLKAYMPADDPSFPSVAAKLPAALWIEREVKDLL 159 Query: 123 GLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVV 182 G PVG PD RRL+LP+DWP+ +YPLRKD + + + +V Sbjct: 160 GFNPVGHPDPRRLILPEDWPEGVYPLRKD------MDYRHSPMAEVKTEYRETPEGTTLV 213 Query: 183 PIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCG 242 P+GP+H +EP HFRLFV GE I+D DYR FY HRG+EK E R+ YN+V FL++R+CG Sbjct: 214 PMGPVHAGIEEPAHFRLFVKGEEIVDVDYRGFYSHRGIEKTGEGRLTYNQVLFLAERICG 273 Query: 243 ICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFM 302 ICG+ HS +Y +VE + +P+RA+ IR ++LE+ER+H+HLL +G+A H G+D+GFM Sbjct: 274 ICGYQHSVSYAMAVERLADVDIPDRARYIRTLMLELERIHNHLLWVGIAAHLVGYDTGFM 333 Query: 303 QFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDV 362 +R+RE M + E LTG RK YG+N++GG+RRD+L + ++ +Q+R E ++ +D+ Sbjct: 334 HAWRIREPVMWLVERLTGNRKQYGMNIVGGVRRDILDYRKEEILKVVKQIREETKKFLDI 393 Query: 363 LLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPF---VGYGLLPMEV 419 L+T +R G+G L ++A+ +S +GP RASG DTR D + Y + +V Sbjct: 394 ALNTNTFIKRAEGVGILPYKVAKAYSVLGPTARASGRRIDTRLDQATKTAMAYNEVDFKV 453 Query: 420 HSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRG 479 + DV++R+ VR++E++ +L +++ +D +PGG +MV + ALGF EA RG Sbjct: 454 PVYKEGDVLARVLVRMDELFESLWIVEQLIDQMPGGDIMVPIGDLPEYEEALGFTEAHRG 513 Query: 480 DDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMT 539 + +H+ MTG+ K+YRW+ RA TY N P + ML+G V+DAPLII S+DPCYSCT+R+ Sbjct: 514 EVVHYVMTGEKNKVYRWKVRAPTYNNLPAVPEMLKGYHVADAPLIIASIDPCYSCTERVQ 573 Query: 540 VVDVRKKKSKVVPYKELERYSIERKN 565 VDV K KV+ E SI+ + Sbjct: 574 FVDVETGKVKVLTEAEFNELSIKYRG 599 >UniRef50_B7R5K6 Hydrogenase-4 component G n=1 Tax=Thermococcus sp. AM4 RepID=B7R5K6_9EURY Length = 545 Score = 521 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 226/519 (43%), Positives = 324/519 (62%), Gaps = 8/519 (1%) Query: 31 DQLTV-TVKVNYLPEVVEFLYYKQGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWIT 89 D++TV V + E+ + L+ G + S G DER +N +A+Y+V + E + + Sbjct: 16 DRVTVAEVSPERVREIAKGLFN-AGCYYSCGMGVDERPVNMRFAMYHVFNCE-AERRHVI 73 Query: 90 VRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLR 149 +++ N+ PS+TP + A W ERE DM G+I G P+ RL+LP+DWP+ +YPLR Sbjct: 74 LKLTTPTNELTLPSITPVIEGASWSEREAMDMLGIIFEGHPEPERLILPEDWPEGVYPLR 133 Query: 150 KDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDA 209 KD ++ P + VP+GP H T EP +F L+V G+ I+DA Sbjct: 134 KDFPYNKKLPPAKPKEG-----RKKPRPDIIEVPLGPYHPTLHEPEYFELYVKGDKIVDA 188 Query: 210 DYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQ 269 YR F++HRGMEKLAE+RM N+V FL++R+CGICG HSTAY +VE+A I VPERA+ Sbjct: 189 KYRGFHIHRGMEKLAESRMTLNQVPFLAERICGICGCTHSTAYCQAVEDATNIYVPERAR 248 Query: 270 MIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNL 329 IR I+LEVERLHSHLL G+ACH GFDSGFM +R RE M +AE++TG RKTYG+NL Sbjct: 249 YIRTIMLEVERLHSHLLWFGVACHLLGFDSGFMHLWRAREYIMDIAELITGNRKTYGINL 308 Query: 330 IGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSN 389 IGG+RRD+ ++ + +L ++ +E++D ++ +++R +G L + R+ Sbjct: 309 IGGVRRDIPEEKKRKVLELLDLAEKDSREILDNVVKMGELKERMENVGVLPKKKGREIGV 368 Query: 390 VGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGL 449 VGP+ RASG D R DHP+ YG L EV +G DV+SR VR +E + + +MI L Sbjct: 369 VGPVARASGIDTDVRRDHPYAAYGDLDFEVPVYKGEDVLSRFLVRYDETFQSFSMIRQAL 428 Query: 450 DNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTL 509 DN+P G L+ E + + LG EAPRG+D+H +T K+YRW RA+TY N P + Sbjct: 429 DNMPEGELINEDYEIPGFKLGLGVTEAPRGEDVHVVITWGENKVYRWHPRASTYNNLPAV 488 Query: 510 RYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVVDVRKKKS 548 MLRGN ++DAP+II S+DPC+SCTD ++++D + Sbjct: 489 PVMLRGNDIADAPIIIASIDPCFSCTDHVSIIDSENGRV 527 >UniRef50_D2MJM9 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MJM9_9BACT Length = 583 Score = 516 bits (1329), Expect = e-145, Method: Composition-based stats. Identities = 157/586 (26%), Positives = 247/586 (42%), Gaps = 60/586 (10%) Query: 8 QHYLAALNEAFPGVVLDHAWQT-KDQLTVTVKVNYLPEVVEFLYYKQ---GGWLSVLFGN 63 L L+E FP VL + L+ V+ L EV FL+ L+ + Sbjct: 2 HRVLETLHERFPEAVLSVREDPQRGDLSAQVRAQDLVEVARFLHDDPGMAFDHLTDICSA 61 Query: 64 DERKLNGHYAV-YYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMY 122 D + V Y+ LS+ T+ I ++ V +P +VT A + EREV D+ Sbjct: 62 DYPDDLERFEVIYHFLSLPHNTR--IRLKTRVTEEQPTLGTVTSIWKGANFLEREVYDLM 119 Query: 123 GLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETY-------------- 168 G+ G PD RR++LP+D+ +E +PLRKD + T D Sbjct: 120 GITFEGHPDLRRILLPEDY-EEGHPLRKDFPTEGKGWRSTFDFIPRLDEPESEWTEREIP 178 Query: 169 ----------EFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHR 218 + ++ +GP H ++ L +DGE + A + Y+HR Sbjct: 179 QDQRHMFLAGDAPESAKRTTELLLNMGPQHPSTHGVLRVVLELDGERVAKAVPDMGYLHR 238 Query: 219 GMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEV 278 G+EKLAE + Y +V +DR+ +C ++ AY +VE +G+ +PERA+ +R I+ EV Sbjct: 239 GVEKLAEG-LHYMQVIPHTDRLDYVCAMTNNYAYVRAVEKLVGVTIPERAEYVRTIVAEV 297 Query: 279 ERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLL 338 +R+ HL LG G + F FR RE + E L GAR T IGG+ DL Sbjct: 298 QRIVGHLFWLGTQALDIGAMTVFFWTFREREVLLDFFEQLCGARLTLNYYRIGGVDGDLT 357 Query: 339 KDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASG 398 + + R + VQE +L RT + + E A +F GP +R SG Sbjct: 358 PALIERLRGFLKTFPEHVQEYDTLLQRNRIWVARTKNVAVISAEDAINFGLTGPTLRGSG 417 Query: 399 HARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLM 458 A D R P+ Y + +V +G D R +R+ E+ + +I+ LD LP GP+M Sbjct: 418 VAYDVRKLEPYGVYDRVEWDVPVGKGGDTYDRYWIRVEEMKQSARIIEQCLDQLPEGPIM 477 Query: 459 VEGFT---------------------------YIPHRFALGFAEAPRGDDIHWSMTGDNQ 491 + P E P+G+ + ++ + Sbjct: 478 ADMPQVIPPAKPNVMRDMESLIHHFIIFTQGFKPPKGETYCGTEVPKGELGFFLISDGSP 537 Query: 492 KLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + YR + R+ ++ + +M RG +SD I G+ D DR Sbjct: 538 RPYRMKIRSPSFVHMGAFDFMARGYLISDIITIFGTYDIVMGECDR 583 >UniRef50_A1ASR5 NADH dehydrogenase (Ubiquinone), 30 kDa subunit n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1ASR5_PELPD Length = 557 Score = 511 bits (1317), Expect = e-143, Method: Composition-based stats. Identities = 212/566 (37%), Positives = 319/566 (56%), Gaps = 10/566 (1%) Query: 1 MSEEKLGQHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVL 60 M +KL Q L + F + +L V + + + ++++ + Sbjct: 1 MVSKKLQQ-----LKDKFGSAIQQADVVNDMRLLVYIDPASVKPICQYIFRDMDARYVIS 55 Query: 61 FGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRD 120 G+D+R +G + V++ + + K ++ ++ P S++ +PAA W ERE++D Sbjct: 56 IGSDDRPYSGKFLVFHQFAFD-KEKILFSIICQLPGENPRIDSISGIIPAANWAERELKD 114 Query: 121 MYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNN 180 + G+ PVG P +RLVLPD WPD +PLRKD P E EF + Sbjct: 115 LLGIEPVGHPYPKRLVLPDAWPDGHHPLRKDF---AWNKIPEGYDEEREFDFDETPPGCT 171 Query: 181 VVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 240 VP GP H T DEP HFRL+VDGE + +YR F VHRG+EKL+E+ +GYN+V +++R+ Sbjct: 172 AVPFGPFHPTLDEPEHFRLYVDGEFVRGCEYRGFMVHRGIEKLSESVLGYNDVPMMAERI 231 Query: 241 CGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG 300 CGICG HS A+ +VEN G+ VP RA+ IR I+LE+ERLHSH + +GLACH GFD+ Sbjct: 232 CGICGCVHSLAFCQAVENGAGVIVPPRAEFIRTIMLEIERLHSHPMWVGLACHLVGFDTL 291 Query: 301 FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELV 360 FMQ +R+RE M +AE +TG RKTYGL +IGG+R D + + +TR + ++ E +++V Sbjct: 292 FMQAWRIREPIMWLAEKITGNRKTYGLGIIGGVRWDFTPELIAETRAVLDKLESEWRQVV 351 Query: 361 DVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVH 420 + N+ RT G+G D + ++ VGP+ R G D R DHP+ Y + +V Sbjct: 352 AAVSKDKNIMARTSGVGMADKALCKEMGLVGPVARGGGVDIDARRDHPYAAYDRVDFKVI 411 Query: 421 SEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRF-ALGFAEAPRG 479 + DV R+ VR+ EV+ ++N+I D +P GPL+ + T +P EAPRG Sbjct: 412 THNTADVWGRVVVRMLEVFESINIIRQCFDKMPQGPLVADITTELPAGRVGYTSIEAPRG 471 Query: 480 DDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMT 539 + H+++TGD+ + RWR RA TY N + M++ ++D + +G +DPC SCTDRM Sbjct: 472 ESHHFAITGDDNRPRRWRARAPTYQNLQGIPAMIKDQRIADMQISLGGIDPCMSCTDRME 531 Query: 540 VVDVRKKKSKVVPYKELERYSIERKN 565 +D+R K EL S RK Sbjct: 532 TIDIRTGARKSWTKAELLSLSRSRKG 557 >UniRef50_Q3A825 NADH-quinone oxidoreductase subunit B/C/D n=103 Tax=cellular organisms RepID=NUBCD_PELCD Length = 794 Score = 510 bits (1314), Expect = e-143, Method: Composition-based stats. Identities = 155/574 (27%), Positives = 250/574 (43%), Gaps = 53/574 (9%) Query: 10 YLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLY---YKQGGWLSVLFGNDE- 65 L L E F V D T+ +PE++ FL + L L DE Sbjct: 228 LLEQLRERFGDDVRQEE--GADMPTLVADPAQVPELLRFLKQDIDQPYERLEDLTAIDET 285 Query: 66 ----RKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDM 121 R + VY++LS E+ ++ V+ + ++ E PS+T PAA W ERE DM Sbjct: 286 ARSQRPAHDLTMVYHLLSFERAG--YLRVKAPLRNDRAEVPSITGLWPAANWYEREAFDM 343 Query: 122 YGLIPVGLPDERRLVLPDDWPDELYPLRKDSM-----------DYRQRPAPTTDAETYEF 170 +G+ G PD RR+++P+ W + +PLRK D P + + Sbjct: 344 FGVRFAGHPDLRRILMPEGW--QGHPLRKSHPSRATDMPPFTRDTATTMVPPEGSHFFSN 401 Query: 171 INELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGY 230 + ++ +++ +GP H + L + GE I+D D + Y HRG EK+AE R + Sbjct: 402 RAPVDNQSLSILNLGPQHPGTHGILRVILQLAGEEIVDLDSEIGYHHRGAEKIAE-RQHW 460 Query: 231 NEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGL 290 N+ +DR+ + G ++ AY SVE G++VP RA+ IR +L E+ R+ SHL+ LG Sbjct: 461 NQYIPYTDRIDYLAGSLNNLAYLYSVETLCGVEVPPRARYIRVLLSELFRIASHLVWLGT 520 Query: 291 ACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQ 350 H G + F RE + E++TG R IGG+ DL + + Sbjct: 521 FAHDVGAMTPVFYAFDSREKIFDIIELITGGRMHPAWFRIGGVPDDLPDGWLAAVEAFTR 580 Query: 351 QMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFV 410 + E +L P RT GIG + + A + GP +RA+G A D R P+ Sbjct: 581 DFEARIDEFDRLLTGGPIFRARTEGIGTVSRQQAVELGFSGPNLRATGLAWDLRKSMPYG 640 Query: 411 GYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTY------ 464 GY +V + G D +R VR+ E+ +L ++ + +P G + + + Y Sbjct: 641 GYDEFDFDVVTAGGGDCFARYLVRLGELRQSLRIVRQAAEGMPQGRWISDQYRYAYPKRE 700 Query: 465 ---------------------IPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATY 503 P E+ +G+ +++++ YR R R ++ Sbjct: 701 DGLQDIESLIHHFLHVSRGPAAPRGECYRAIESSKGECGYYAVSDGGTGAYRLRIRTPSF 760 Query: 504 ANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + L + RG V+D I+GSLD + DR Sbjct: 761 PHLQALPQLSRGRLVADVITILGSLDYVLADLDR 794 >UniRef50_A3DNE9 NADH dehydrogenase (Ubiquinone), 30 kDa subunit n=2 Tax=Desulfurococcaceae RepID=A3DNE9_STAMF Length = 548 Score = 501 bits (1289), Expect = e-140, Method: Composition-based stats. Identities = 215/549 (39%), Positives = 317/549 (57%), Gaps = 13/549 (2%) Query: 14 LNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVLFGNDERKLNGHYA 73 + E +V + + L + + NYL + V+ ++ + + DER LNG +A Sbjct: 12 IIEKLGDIVKETKYIGDQALMLRIDRNYLRKAVDIIHNDLNAYFRTMVAVDERSLNGTFA 71 Query: 74 VYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDER 133 YY+ ++ I V+ A++P PS+ VPAA W E E D+ G+ Sbjct: 72 SYYIFGLDAAH-LNIIVKTHTSADEPVLPSIIDIVPAADWYELEAWDLLGIKFEN-RKVH 129 Query: 134 RLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDE 193 R VLPD+WP+ +YPLRKD + +PIGP H E Sbjct: 130 RFVLPDEWPEGIYPLRKDVEYTYRPKPRKVP---------RQPPTGQRIPIGPYHPALHE 180 Query: 194 PGHFRLFVDGENIIDADYRLFYVHRGMEKLAE-TRMGYNEVTFLSDRVCGICGFAHSTAY 252 P +F L+V+GE ++D +Y F+VHRG+EKLAE R Y ++ FL++R+CGICGF HS +Y Sbjct: 181 PEYFELYVEGEKVVDVEYNGFHVHRGIEKLAEAPRFNYQKIPFLAERICGICGFVHSVSY 240 Query: 253 TTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSM 312 T SVE A I VPERA+ IR+I+LE+ERLHSHLL +G+ CH G+D+GFM +R+RE M Sbjct: 241 TMSVERAAKIDVPERAEYIRSIILEIERLHSHLLWIGVVCHLLGYDAGFMHTWRIREKVM 300 Query: 313 KMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQR 372 +AE+LTG+RKTYG+NL+GG+R+D+ D + + + +R E + L D++ S + +R Sbjct: 301 VLAELLTGSRKTYGINLVGGVRKDINMDKIEAVKNTIEYIRSEFKHLSDLITSISQIVKR 360 Query: 373 TVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLK 432 G G L + AR S VGP+ R SG RD R D+P+ Y + +V D ++RL Sbjct: 361 ASGTGILSRDDARKLSVVGPVARGSGLDRDVRRDYPYAAYRDVYFKVPVYNEGDNLARLL 420 Query: 433 VRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQK 492 VRI+EV+ ++ +++ +D LPGGP+M E +G EAPRG+ IH + + Sbjct: 421 VRIDEVFESIYILEQLIDKLPGGPIMAEKLEVPEGVIGIGNVEAPRGEVIH-VTITGHGR 479 Query: 493 LYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVVDVRKKKSKVVP 552 YRWR RA TY N P L+ MLR ++DAPL I S+DPC+SCTDR+ +VD+R + Sbjct: 480 PYRWRVRAPTYQNIPALKIMLRDAPLADAPLTIASIDPCFSCTDRIVIVDLRSNRRFKAS 539 Query: 553 YKELERYSI 561 +++ + Sbjct: 540 MEQIIKAGR 548 >UniRef50_Q1PZL4 Similar to membrane-bound [NiFe]-hydrogenase-3, large subunit (Chain E) n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZL4_9BACT Length = 531 Score = 500 bits (1287), Expect = e-140, Method: Composition-based stats. Identities = 185/530 (34%), Positives = 304/530 (57%), Gaps = 7/530 (1%) Query: 8 QHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVLFGNDERK 67 Q ++ L+ F G + ++++ V+ K L V ++ LS + NDER Sbjct: 7 QLHIDKLSGQFKGNITISRSFLENEIYVSTKKENLLNVCLYIKDIFNAVLSSMICNDERT 66 Query: 68 LNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPV 127 L+ H+ +YYV S+++ ++ V + V +PE+PS+TP++PAA W ERE++DM+GLIPV Sbjct: 67 LDKHFKIYYVFSLQR-EDTFLIVTIPVSEQQPEFPSITPQIPAAHWYEREIKDMFGLIPV 125 Query: 128 GLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPL 187 G P LVL ++P+ YPLRKD + E+ + + +P+GP+ Sbjct: 126 GHPRPETLVLHGNFPENTYPLRKDFDIQTR----IPHLESKLPFFRVEGEGVFEIPVGPI 181 Query: 188 HVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFA 247 H EPGHFR G++I D +LF+ H+G EK+ ET M Y + FL++R+CG+C + Sbjct: 182 HAGVIEPGHFRFSAVGDSIFYLDAKLFFTHKGTEKIFET-MPYTKALFLAERICGVCAAS 240 Query: 248 HSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRV 307 H+T Y ++E I++P RA+ IR I++E+ER+++H+ ++G C T F G FR+ Sbjct: 241 HATGYCQAIEKVAEIEIPPRARFIRTIVMELERIYNHIGDVGNICAGTAFLLGIAHGFRI 300 Query: 308 RETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTP 367 RE ++ E +TG R G+ IGG+R D+ D L ++++ ++L ++ + Sbjct: 301 REYLQQLNETITGNRYLRGMLAIGGVRFDINDDLEKHILSLLNHVKKDFKDLTKMMFKSS 360 Query: 368 NMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQ-GCD 426 ++ R GRL EIAR VG RASG +DTR +HP+ Y + ++ D Sbjct: 361 SLLDRLETTGRLSEEIARGLGVVGVAARASGIVQDTRVNHPYAAYEEVDFDIPVFHYEGD 420 Query: 427 VISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSM 486 V++R++VR++EVY ++ +I+ + + GPL P++ AL + E+PRG++I+W M Sbjct: 421 VLARIRVRVDEVYQSIYIIEQCFEKMRPGPLKTPIKELPPYKQALSYVESPRGENIYWIM 480 Query: 487 TGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 T KL+R++ R+ ++ NWP + + + GN V D PLI S + CYSCTD Sbjct: 481 TAPGNKLFRYKVRSPSFCNWPAIPFAVPGNIVPDFPLINKSFELCYSCTD 530 >UniRef50_Q2YAA3 NADH-quinone oxidoreductase subunit C/D n=259 Tax=cellular organisms RepID=NUOCD_NITMU Length = 608 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 149/598 (24%), Positives = 235/598 (39%), Gaps = 66/598 (11%) Query: 1 MSEEKLGQHYLAALNEAFPGVVLD--------HAWQTKDQLTVTVKVNYLPEVVEFLY-- 50 M L L F D D T V N + EV+ +L Sbjct: 16 MGGASNASDVLEELKNRFGPPGTDNPGGPMGVVQKTGDDLPTQWVSRNRVHEVLHYLKLK 75 Query: 51 -YKQGGWLSVLFGNDERKLNGHY--------AVYYVLSMEKGTKCWITVRVEVDANKPEY 101 + L L DER +Y++LS E+ + ++V + Sbjct: 76 AERPYRMLYDLTAIDERTRVHREDQPASRFTVIYHLLSFERNAD--VCLKVALTDTDLRM 133 Query: 102 PSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAP 161 P++T PAA W ERE+ DM+G++ G P RR++LP W + LRKD P Sbjct: 134 PTITDIWPAANWYEREIWDMFGIVFDGHPHLRRILLPPWWQ--GHALRKDHPARATEMEP 191 Query: 162 TT---------------DAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENI 206 E + + +GP H + L +DGE I Sbjct: 192 FHLSTEKEEAEQETLRFHPEEWGMRRTHDGTDFMFLNLGPNHPSVHGVFRIVLQLDGEEI 251 Query: 207 IDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPE 266 IDA + + HRG EK+ E R ++ +DR+ + G ++ Y +VE GI+VP+ Sbjct: 252 IDAVPEIGFHHRGAEKMGE-RQSWHTYIPYTDRIDYLGGVMNNLPYVLAVEKLAGIEVPD 310 Query: 267 RAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYG 326 R +++R ++ E R+ SHL+ G G S F RE + E + G R Sbjct: 311 RVKVMRVMMAEFFRIASHLVFYGTFTQDLGALSPVFFMFTDRERVFDVVEAICGGRMHPS 370 Query: 327 LNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARD 386 IGG+ +DL R M + E + + ++ RT G+G + A + Sbjct: 371 WYRIGGVAQDLPNGWDRMVRDFLDYMPARLDEYDKIAVGNRILKARTRGVGGYSIDEAIE 430 Query: 387 FSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMID 446 + GP +RA G D R P+ GY +V + Q D R VR+ E+ +L +ID Sbjct: 431 WGVTGPNLRACGFEWDFRKARPYSGYDQFEFDVPTGQHGDCYDRCAVRVQEIRQSLRIID 490 Query: 447 YGLDNLPGGPLMVEGF---------------------------TYIPHRFALGFAEAPRG 479 L+N+P G + IP A EA +G Sbjct: 491 QCLENMPAGAHKADHPLTTPPLKKHTLHDIETLIDHFLGVSWGPVIPPGEAFVGIEATKG 550 Query: 480 DDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 ++ ++ ++ N YR R R ++ + + + RG +SD I+GS+D + DR Sbjct: 551 NNGYYLISDGNTTAYRVRIRTPSFPHLQMIPLISRGLMISDLIAILGSIDFVMADVDR 608 >UniRef50_A1RZ40 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 Tax=Thermofilum pendens Hrk 5 RepID=A1RZ40_THEPD Length = 537 Score = 479 bits (1234), Expect = e-134, Method: Composition-based stats. Identities = 168/525 (32%), Positives = 275/525 (52%), Gaps = 13/525 (2%) Query: 35 VTVKVNYLPEVVEFLYYKQGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEV 94 V V + E V L + L+ + D L + Y G + V V++ Sbjct: 10 VQVPPEGIREAVRRLVAEGYAHLTAITAVD---LQDSIELIYHFDGGGGYRH---VSVKL 63 Query: 95 DANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMD 154 P PS+ VP A + E+EVRD++G+ ++RR +LP+ +P + P +D Sbjct: 64 PRANPTLPSIAQVVPGADYYEKEVRDLFGVNFQDGAEKRRFILPECYPPDAPPPLLKDVD 123 Query: 155 YRQRPAPTTDAETYEF----INELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDAD 210 A +A T + ++ ++ VVP+GP H EP +F L VDGE I+ A Sbjct: 124 PASVKALVAEAPTCQVDAVGLHAPLSPESVVVPVGPYHPAFKEPEYFSLVVDGERIVKAF 183 Query: 211 YRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQM 270 R+ +VHRG+EK AE+R + + FL +R+CGIC +H+ + +VE + ++VP RA Sbjct: 184 VRIGFVHRGIEKAAESRSFFRD-IFLVERICGICSTSHAWCFVEAVERLLNMEVPRRAAY 242 Query: 271 IRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLI 330 +R ++ E+ER+HSH L LGL ++TGF++ FM + +RET M + E ++G R I Sbjct: 243 LRTLVAELERIHSHALWLGLVGYWTGFETMFMWVWGLRETIMDLLEEISGNRVHKSFVTI 302 Query: 331 GGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNV 390 GG+RRD+ + + + + RRE + L++ L + + RT GIGR + AR + V Sbjct: 303 GGVRRDVPDALLRRVSERVETFRREFESLLESLSYSEEIISRTKGIGRYSLDDARKYCAV 362 Query: 391 GPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLD 450 GP+ RA+G D R P+ Y + EV + DV + ++VR+ EV + ++I ++ Sbjct: 363 GPVRRAAGDPFDVRRIEPYGAYPEVEFEVPTSNEGDVYNLIRVRVKEVVESASIIQQLVE 422 Query: 451 NLPGGPLMVEGFTY--IPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPT 508 +P G + +P A EAPRG+ ++ + YR + R T AN Sbjct: 423 KMPSGNPVPPKPFMGTVPEGEAYSRIEAPRGELFYYVKANNTHNPYRVKVRTPTLANIQL 482 Query: 509 LRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVVDVRKKKSKVVPY 553 +L G T+SD P+++ S+DPC+SC DR+T++D+ K+ +V Sbjct: 483 AAKILEGQTLSDFPVVVTSIDPCFSCMDRVTIIDLSGKRREVSSK 527 >UniRef50_Q0W2B9 Hydrogenase, large subunit-like protein (HycE-like) n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W2B9_UNCMA Length = 524 Score = 476 bits (1226), Expect = e-133, Method: Composition-based stats. Identities = 181/536 (33%), Positives = 295/536 (55%), Gaps = 13/536 (2%) Query: 1 MSEEKLGQHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVL 60 M+ + + AA E + A + + V + LP V F+ + G L+ L Sbjct: 1 MTAKNITNEITAAFGEE-----MASARDVGNNVFVRAGKDALPYVASFVAKRYGASLATL 55 Query: 61 FGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRD 120 D R++ G Y +Y V+ + +++ EV + + S+TP + +A W ERE+ D Sbjct: 56 HVADTRQMTGGYTMYAVMPVA-SENLIVSIEAEVPESPGTFQSLTPMIYSANWFEREIAD 114 Query: 121 MYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNN 180 M+GL PVG PD R LVL D WP++ +PLRKD+ + + + + Sbjct: 115 MFGLTPVGHPDLRPLVLYDTWPEDYHPLRKDAPGRPPKVDTYYPY------HRVEGEGVF 168 Query: 181 VVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 240 +P+GP+H EPGHFR V GE ++ + R+ YVH+G+EK++E+ M Y++ FLS+R Sbjct: 169 EIPVGPVHAGVIEPGHFRFSVAGEPVLMLEIRMGYVHKGIEKISES-MTYDKGVFLSERT 227 Query: 241 CGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG 300 G G AHSTAY +VE GI+VP+RA+ IR + LE+ER+++HL ++G T ++ G Sbjct: 228 SGDNGMAHSTAYCQAVEQLAGIEVPDRARYIRTVFLEMERIYNHLGDVGGISLDTAYNVG 287 Query: 301 FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELV 360 + +RE +++ E +TG+R +N IGG+R+DL ++D+ + R + + + ++ V Sbjct: 288 AQHAYILRERMLQLNECITGSRLLRSVNKIGGVRQDLTREDIEKIRTAIIKAKLDFKDFV 347 Query: 361 DVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVH 420 D++ ++ RT G+L E A + VGP RASG +RD R DHP+ Y L VH Sbjct: 348 DLVNRQTSILDRTETTGKLPLEAAVSLNIVGPGARASGVSRDVRRDHPYAAYSDLNFAVH 407 Query: 421 SEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGD 480 + DV +R++V+I E+Y ++++I+ LD LP G + R + EAPRG+ Sbjct: 408 IRKEGDVNARMQVKIGEIYESMSIIEQALDRLPAGKIRAATGNIPQGRVGISLVEAPRGE 467 Query: 481 DIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 +HW ++G+N + +R + R ++ NW + GN V D PL+ S + YS D Sbjct: 468 LLHWILSGENDRPFRHKIRDPSFCNWLAMEIATPGNIVPDFPLVNKSFNLSYSGND 523 >UniRef50_Q6MIR5 NADH-quinone oxidoreductase subunit C/D n=1 Tax=Bdellovibrio bacteriovorus RepID=NUOCD_BDEBA Length = 560 Score = 474 bits (1221), Expect = e-132, Method: Composition-based stats. Identities = 130/562 (23%), Positives = 228/562 (40%), Gaps = 38/562 (6%) Query: 8 QHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQ-GGWLSVLFGNDER 66 ++ L F D + + V P ++ FL +L + G D Sbjct: 5 ENLKQLLAGKFKIENFKFTHAVGDDV-IEVPKEDAPALLLFLRESGQFDFLMDVCGADYP 63 Query: 67 KLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIP 126 + V Y L K + + V+ +V + + P A W ERE DM+G+I Sbjct: 64 SREKRFDVVYNLFNSKDSS-RLRVKAQVGEGE-SIGTAIPAYRGADWFEREAYDMFGIIF 121 Query: 127 VGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELG----DKKNNVV 182 G P+ R+++ + +PLRKD Q+ + + + K + Sbjct: 122 EGHPNLRKILTHHQFV--GHPLRKDYDANNQQACTNSLPIHFNNEPGSPGDVLNDKYLPL 179 Query: 183 PIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCG 242 IGP H +DGE I+ + + Y+HR EK+AET YN+V +DR+ Sbjct: 180 NIGPSHTAMHGTLRVMAEMDGETIVRCNNEIGYLHRCFEKMAET-HPYNQVIPYTDRLNY 238 Query: 243 ICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFM 302 ++ Y +VE +G+++P +AQ +R IL E+ R+ H + +G G + F Sbjct: 239 CSAPMNNIGYCKAVERLLGVEIPPKAQAMRVILAELSRIIDHTIAIGTGAMDLGALTSFF 298 Query: 303 QFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDV 362 F +RE + E L GAR T + IGG+ +D + + L +++R+ E+ ++ Sbjct: 299 YMFGMREKVYGLFEKLCGARLTVSMTRIGGMAQDAPEGWFDEVLALVKEIRKGTDEMANM 358 Query: 363 LLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSE 422 ++ QRT + + A + GPM+RA G D R P+ GY L +V Sbjct: 359 VIDNKIFIQRTKNVCPVSAADAIQWGYTGPMLRACGVNLDLRKAQPYYGYDALDFDVPVG 418 Query: 423 QGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGF-------------------- 462 D+ R VR E+ ++ +I+ N+PGG + Sbjct: 419 TNGDIYDRYLVRFEEMRQSVRIIEQVCKNVPGGDYTIRDKGIVLPEKKDVYGNIEGLMNH 478 Query: 463 -------TYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRG 515 P EA G+ + ++ + YR + R +A + + +++G Sbjct: 479 FMLIIKGLRPPVGEVYDATEAANGELGFYLVSDGSANPYRLKVRPPCFAIYQSFPTVVKG 538 Query: 516 NTVSDAPLIIGSLDPCYSCTDR 537 ++DA + S++ DR Sbjct: 539 AMLADAIATVASMNLIAGELDR 560 >UniRef50_D2U4G0 NADH-quinone oxidoreductase chain C/D n=1 Tax=Arsenophonus nasoniae RepID=D2U4G0_9ENTR Length = 614 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 150/578 (25%), Positives = 239/578 (41%), Gaps = 53/578 (9%) Query: 10 YLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYY--KQGGWLSVLFGNDERK 67 + AL F L + +K L V+EFL K L L G DER+ Sbjct: 40 IILALRNQFSPDAFTIQSTRTGMLVIWIKREQLLAVIEFLKKQPKPYVMLFDLHGVDERQ 99 Query: 68 L-------NGHYAV-YYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVR 119 + ++V Y+++S+E+ I ++V + PS+ P A W EREV Sbjct: 100 RVYRHGLPDADFSVFYHLISIERNRD--IMLKVALSEKDLNVPSLVSLFPNANWYEREVW 157 Query: 120 DMYGLIPVGLPDERRLVLPDDWPDEL----YPLRKDSMDYRQRPAPTTDAET-------- 167 DM+G+ G P+ RRL++P W YP R D D E Sbjct: 158 DMFGITFTGHPNLRRLLMPVTWQGHPLCKDYPARATEFDPFVLTKQKLDLEMESLTFKPE 217 Query: 168 -YEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAET 226 + + + +GP H +S L +DGE IID + Y HRG EK+ E Sbjct: 218 EWGMARGNEHEDFMFLNLGPNHPSSHGAFRIVLQLDGEEIIDCVPDIGYHHRGAEKMGE- 276 Query: 227 RMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLL 286 R ++ +DR+ + G + Y +VE GI VPER IR +L E+ R++SHLL Sbjct: 277 RQSWHSYIPYTDRIEYLGGCVNEMPYVLAVEKLAGIDVPERVMTIRVMLSELFRINSHLL 336 Query: 287 NLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTR 346 + G + F R+ + E +TG R IGG+ DL + + Sbjct: 337 YISTFIQDVGAMTPVFFAFTDRQKIYDIIEAITGFRMHPAWFRIGGVAHDLPQGWQKLLQ 396 Query: 347 QLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRAD 406 + M + + V L ++ R+VG+ + A D+ G +RA+G D R Sbjct: 397 EFLDWMPKRLDSYVKAALQNSILKGRSVGVAAYTTKEALDWGVTGAGLRATGLDFDIRKW 456 Query: 407 HPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGF---- 462 P+ GY EV D R+ +++ E+ +L+++ L+N+P GP + Sbjct: 457 RPYSGYENFEFEVPIGNNGDCYDRVMLKVEELRQSLHILKQCLNNMPAGPFKADHPLTTP 516 Query: 463 -----------------------TYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCR 499 +P A EA +G + ++ + N YR R R Sbjct: 517 PPKERTLQHIETMINHFLQVSWGPVMPANEAFQMIEATKGINSYYLTSDGNTMSYRTRVR 576 Query: 500 AATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 ++A+ + ++RG+ VSD + +GS+D S DR Sbjct: 577 TPSFAHLQQIPAVIRGSLVSDLIVYLGSIDFVMSDVDR 614 >UniRef50_C8W240 Hydrogenase, large subunit-like protein n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W240_DESAS Length = 525 Score = 467 bits (1202), Expect = e-130, Method: Composition-based stats. Identities = 180/501 (35%), Positives = 281/501 (56%), Gaps = 9/501 (1%) Query: 37 VKVNYLPEVVEFLYYKQGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDA 96 V E V+ L + G +L + G DER NGH++VY V + T + ++ ++A Sbjct: 34 VPAASFMETVKRLKAE-GAYLLTMTGVDERDYNGHFSVYSVFGLPGDT-TLVETKIVLNA 91 Query: 97 NKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYR 156 P + S++P +P+A W ERE++DM G++P G PD RR+ + DWP +++P+RKD + R Sbjct: 92 ENPTFTSISPVMPSAHWLEREIKDMLGIVPYGHPDLRRVAVHPDWPQDVFPMRKDFIAGR 151 Query: 157 QRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYV 216 Q P + + + + VP+GP+H EPGHFR F GE++I+ +LFY Sbjct: 152 QVPRVQGEMQFCKVE----GEGLYQVPVGPVHAGIIEPGHFRFFTFGEDVINLQAQLFYT 207 Query: 217 HRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILL 276 HRG+EK AE + + V +++RVCG+C +H+ +Y ++E+ GI P RA+ IR +LL Sbjct: 208 HRGIEKTAEGKHFLDAVL-VAERVCGVCSASHAVSYAQAIESLAGINAPLRARYIRTVLL 266 Query: 277 EVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRD 336 E+ERL++H+ ++G C GF G + ++E M+M L G R G + GG++ D Sbjct: 267 EMERLYNHVGDIGNMCAGIGFSFGISRGAELKERLMRMNMKLAGHRYLRGTVVPGGVKID 326 Query: 337 LLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRA 396 L D + ++RE++EL D +LS+ ++ R G L + ARD GP RA Sbjct: 327 L--KDTEGIGRALDTVKRELKELTDTMLSSQSLLDRMQTTGVLPTDAARDLGATGPAARA 384 Query: 397 SGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGP 456 SG RD R + P+ Y + +V + DV RL RI E + ++I +NLP G Sbjct: 385 SGVNRDLRREFPYAAYRRVSFQVPIQHEGDVYCRLIQRIEESEQSFDIIRQVFNNLPAGE 444 Query: 457 LMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGN 516 L P+ A+G+ E+ RG ++HW M+G + +YR+ R+A++ NWP + L GN Sbjct: 445 LQAPITYLQPYHTAVGYTESARGANVHWVMSGPDNTVYRYMVRSASHCNWPVVPLCLPGN 504 Query: 517 TVSDAPLIIGSLDPCYSCTDR 537 V D PLI S + CY+C DR Sbjct: 505 IVPDFPLINKSFELCYACLDR 525 >UniRef50_Q2C5T4 NADH dehydrogenase I, B/C/D subunits n=2 Tax=Photobacterium RepID=Q2C5T4_9GAMM Length = 565 Score = 465 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 146/564 (25%), Positives = 244/564 (43%), Gaps = 47/564 (8%) Query: 14 LNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYK---QGGWLSVLFGNDERKLNG 70 L E F +H + + VK +L + + FL + + L L DE + G Sbjct: 9 LIERFDAKAPNHEIIGCE--SFEVKKEHLIDTLHFLKNEASSRFEMLFDLSAIDECERGG 66 Query: 71 HYAV-YYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGL 129 +V YY+LS++ +I++R + + E P+V P A W EREV DM+G+ Sbjct: 67 GLSVFYYLLSVKNKQ--FISIRTHIANDTIEVPTVVGLWPNANWYEREVYDMFGIKFTDH 124 Query: 130 PDERRLVLPDDWPDELYPLRKDSM--------DYRQRPAPTTDAETYEFINELGDKKNNV 181 PD RR++ D W + +PLRK + D I D + V Sbjct: 125 PDLRRILTFDFW--KGHPLRKSYPCRATLMDEPFDLEGPDFDDVMKSYDIQGKQDDGSMV 182 Query: 182 VPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 241 + IGP H +D ++ + GE I D D + + HRG EK+AE R ++ +DR+ Sbjct: 183 LNIGPNHPGTDGVIRLKVKMKGEFIEDLDQEIGFHHRGAEKIAE-RHTFHNYIPYTDRID 241 Query: 242 GICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGF 301 + G A Y +E GI+VPERA+ +R +L E+ R+ SHL+ G H G + Sbjct: 242 YLGGVAGELPYLLGLEAMTGIEVPERAKTMRIMLCELFRISSHLVWFGSITHNLGGMAPA 301 Query: 302 MQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVD 361 F RE + E++ G R IGG+ +DL + Q + + V +L Sbjct: 302 FYAFTEREKIFDVIELICGGRMHPAFFRIGGVSQDLPDGWQDKVEHACQGIEQLVPDLEK 361 Query: 362 VLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHS 421 ++ + + RT I +A D+ GP +RA+G D R D P++GY +V Sbjct: 362 LMTHSMIFKIRTQNIAVYSQSMALDWGLTGPNLRATGINFDMRKDFPYMGYEDYDFDVPV 421 Query: 422 EQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFT------------------ 463 Q D +R +R+ EV +L +I +P GP++ + Sbjct: 422 GQDGDAYTRTVLRVQEVVESLKIIRQAAARMPEGPILADNAPSFGFPRKQNALRDIETLI 481 Query: 464 ----------YIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYML 513 P E +G + +++ YR R R ++ ++ +++ + Sbjct: 482 HSFVDTGRGFNFPVAETFYATETAKGVTSYHTISNGTGCPYRVRIRTPSFTHFQSVKAVS 541 Query: 514 RGNTVSDAPLIIGSLDPCYSCTDR 537 +G+ +S+ +IGS+D + DR Sbjct: 542 KGDLLSNIICLIGSIDYVLADIDR 565 >UniRef50_C9LCY9 NADH dehydrogenase I, C/D subunit n=9 Tax=Bacteroidales RepID=C9LCY9_9BACT Length = 558 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 142/529 (26%), Positives = 233/529 (44%), Gaps = 19/529 (3%) Query: 25 HAWQTKDQLTVT-VKVNYLPEVVEFLYYKQ-GGWLSVLFGNDERKLNGHYAVYYVLSMEK 82 +++L + + L ++ L ++ +L L G D + +G VY + S + Sbjct: 33 ETKPAENELQLHYLAPEDLHAEMQRLKDEEHFDFLETLTGMDWGE-DGLGVVYNLWSTTQ 91 Query: 83 GTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDW- 141 + + D P P+V+ A EREV D +G+ +G PD RR+ L +DW Sbjct: 92 NKRISLK-TATTDRENPFLPTVSDLWNIANIYEREVFDFFGIKFLGHPDMRRIFLREDWN 150 Query: 142 ---------PDELYPLRKDSMDYRQ--RPAPTTDAETYEFINELGDKKNNVVPIGPLHVT 190 P+E PLR D+ D N + + + VV IGP H + Sbjct: 151 GYPMRKDDKPEEENPLRMDNEPLADVTTQYDRPDGSITTKENTIFTEDDYVVNIGPQHPS 210 Query: 191 SDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHST 250 + HFR+ ++GE I D L Y+HRG+EKL E+ + Y + L++R+ + + Sbjct: 211 THGVLHFRVALEGERIRKIDPILGYIHRGIEKLNES-LTYPQTLALTERLDYLGAMQNRH 269 Query: 251 AYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRET 310 A +E A GI+V ER Q IR I+ E +R+ SH+L C G S F+ FR RE Sbjct: 270 ALCMCIEKAAGIEVSERVQYIRTIMDEFQRIDSHILFFSCLCQDMGATSAFLYGFRDREQ 329 Query: 311 SMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNME 370 + + E G R N IGG+ D+ + + + ++ MR +QE D+ ++ Sbjct: 330 ILDIFEETCGGRLILNYNTIGGVMADIHPNFVRRVKEFIPYMRHNLQEYYDIFVNNVIAH 389 Query: 371 QRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISR 430 R G+G L+ E F G RA+G + D R P+ Y + + + D +R Sbjct: 390 NRLEGVGVLNKEQVISFGCTGGTGRAAGWSNDLRKHQPYAAYDKVDFQEITYTEGDSFAR 449 Query: 431 LKVRINEVYTALNMIDYGLDNLPGGPLMVEGFT--YIPHRFALGFAEAPRGDDIHWSMTG 488 L VR+ E+ +L +I+ +D +P GP + IP E RG+ + Sbjct: 450 LMVRMKEIEESLKIIEQLIDGIPEGPFQTKTKPIIKIPAGTYYSAVEGSRGEFGVLLESK 509 Query: 489 DNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 ++ R R+ + + R N ++D I G++D DR Sbjct: 510 GDKFPSRLHYRSTGLPLVAAMDTICRDNFIADLMAIGGTVDYVVPDIDR 558 >UniRef50_B1ZSF2 NADH dehydrogenase (Quinone) n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZSF2_OPITP Length = 531 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 172/528 (32%), Positives = 261/528 (49%), Gaps = 6/528 (1%) Query: 10 YLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVLFGNDERKLN 69 L + F G + D+L + + + LY K GG L +F D R Sbjct: 10 VFDELQQRFEGQLQRVDASQPDELHLHAPLELASALCSTLYRKSGGRLVSVFAEDGRAGG 69 Query: 70 GHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGL 129 + VYY+ +++ ++ VRV V A +PE S+T V A W ERE++D++GL VG Sbjct: 70 AGFYVYYLYAVDAAHG-FVLVRVVVPAERPELISLTNAVHAVNWQEREIQDLFGLKLVGH 128 Query: 130 PDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHV 189 P+ RR VL DDWP E++PLRKD Q P + + E+ + VP+GP+H Sbjct: 129 PNPRRCVLHDDWP-EVFPLRKDFDLQTQLPPFSGER---HKFREVAGEGVFQVPVGPVHA 184 Query: 190 TSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHS 249 EPGHF V GE ++ R+FYVH+G EKL E+ + L++ + G FAH+ Sbjct: 185 GVIEPGHFLFSVAGEPVLYLQLRMFYVHKGTEKLFES-LPITHGVRLAESISGDSAFAHA 243 Query: 250 TAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRE 309 TA+ ++E A G+ P R + +R + LE+ER+ +H+ ++G C F + M R++E Sbjct: 244 TAFCHAIERAAGVAAPPRGRALRTLCLELERISNHVADIGAICTDVAFVTAQMHALRLKE 303 Query: 310 TSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNM 369 ++ E LTG R G+ +GG+R D + + ++ ++LV+++ S Sbjct: 304 QVLRWNEQLTGNRLLRGMACLGGVRFDFDSAQLDALAAFVDTLEQQFKDLVELIRSHSGT 363 Query: 370 EQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVIS 429 R G L P +ARD VG RASG D R D P Y + V DV Sbjct: 364 RDRLETTGVLAPAVARDLGIVGIAGRASGIDHDLRRDCPTDFYDQVQFTVPVFTEGDVQR 423 Query: 430 RLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGD 489 R+ VR E++ +L +I L +PGG + R ALG+ E RG+ HW T Sbjct: 424 RMVVRREELFQSLGIIRQVLAKMPGGAIATPVGDVPADRIALGYVEGWRGEIFHWVHTAP 483 Query: 490 NQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 +L R + + + NWP L + GN + D P++ S + YS TDR Sbjct: 484 GNRLARCKIKDPSLQNWPALSEAILGNIIPDFPVVNKSFNLSYSGTDR 531 >UniRef50_B2V8J2 NADH-quinone oxidoreductase subunit C/D n=15 Tax=Aquificales RepID=NUOCD_SULSY Length = 576 Score = 457 bits (1177), Expect = e-127, Method: Composition-based stats. Identities = 131/577 (22%), Positives = 219/577 (37%), Gaps = 61/577 (10%) Query: 12 AALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQ---GGWLSVLFGNDERKL 68 L E F + K L+V V + E + FL L D + Sbjct: 10 KKLEERFG---YPKVSEGKGVLSVEVPKDKFIEFLTFLKEDPEYQFKMFIDLTIIDHGEK 66 Query: 69 N-GHYA-VYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIP 126 + V + S + I V+ P++T A W ERE DM+G+ Sbjct: 67 ENPRFQGVVILFS--PKNQERIIVKTWA--ENETLPTLTNLWKGAKWAEREAWDMFGIKF 122 Query: 127 VGLPDERRLVLPDDWPDELYPLRKDSMDYRQRP--------------------------- 159 G + R++L + +P +PLRKD + Sbjct: 123 EGHENLVRMLLWETYP--YHPLRKDFPLEGIKDTELPSLNETLRGENLEGLFNYDRMHTA 180 Query: 160 -APTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHR 218 D E + V+ GPLH + F +DGE + D + +HR Sbjct: 181 LPTMEDLEITQKKRMPVKTSQIVLNWGPLHPGTHGTIWFLFDLDGEYVKQCDIIIGQLHR 240 Query: 219 GMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEV 278 G+EKL E + + + +DR+ I + AY + E +GI+VPE+A+ IR ++ E+ Sbjct: 241 GVEKLGEN-VNWQQFIPYTDRMDYIAAINENHAYVLAAEKMLGIEVPEKAKWIRTMMAEL 299 Query: 279 ERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLL 338 R++SHLL LG G + F+ FR RE M + E +TGAR T IGG+ DL Sbjct: 300 SRINSHLLWLGTYALDLGALTMFLYTFREREKIMDIIEGITGARFTINYFRIGGVFADLP 359 Query: 339 KDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASG 398 + L + + + + + +L R + + E + G + R SG Sbjct: 360 YGALDAIEHLIKDLPQRINDYETLLTRNRVWLSRNKDVCVITEEDVYQYGLTGAVARGSG 419 Query: 399 HARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLM 458 D R + YG + ++ + D R VR+ E+ ++ +I+ + L Sbjct: 420 VPYDVRKIDKYDAYGEVEFDIPVGEKGDSYDRYLVRMEEMRQSIRIIEQCIAKLRKMSKD 479 Query: 459 VEGF-----------------TYIPHRFALGFAEAPRGDDIHWSMTGDNQ-KLYRWRCRA 500 F +P ++ PRG+ + + K +R R R+ Sbjct: 480 DPYFFQTPDEKKLKVTIDGRGMKLPAGETYASSDNPRGELGFYIYNKKDGLKAHRMRIRS 539 Query: 501 ATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + N + G ++DA ++ ++DP TDR Sbjct: 540 GAFYNLQVFTKAIIGRPIADAITLLSTIDPVVGETDR 576 >UniRef50_Q5LH50 NADH-quinone oxidoreductase subunit C/D n=34 Tax=Bacteroidetes RepID=NUOCD_BACFN Length = 530 Score = 450 bits (1159), Expect = e-125, Method: Composition-based stats. Identities = 152/527 (28%), Positives = 235/527 (44%), Gaps = 27/527 (5%) Query: 36 TVKVNYLPEVVEFLYYK-QGGWLSVLFGNDERKLNGHY---------AVYYVLSMEKGTK 85 ++ L + + L + Q +L L G D + VY++ S G + Sbjct: 6 YIEPAALHDEMLRLRNEKQMDFLESLTGMDWGVADEGDAPNVTRGLGVVYHLESTVTGER 65 Query: 86 CWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDW---- 141 I + PE PSV+ AA + EREV D YG++ +G PD RRL L +DW Sbjct: 66 IAIKTSTN-NRETPEIPSVSDIWKAADFNEREVFDYYGIVFIGHPDMRRLYLRNDWVGHP 124 Query: 142 ------PDELYPLRKDS---MDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSD 192 P++ PLR D+ D + D N + D + VV IGP H + Sbjct: 125 MRKDNNPEKDNPLRMDNEETYDTTREIELNPDGTYQTQENVIFDDREYVVNIGPQHPATH 184 Query: 193 EPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAY 252 FR+ ++GE I D Y+HRG+EK+ E+ + Y + L+DR+ + + A Sbjct: 185 GVMRFRVSLEGETIKKLDANCGYIHRGIEKMNES-LTYPQTLALTDRLDYLGAHQNRHAL 243 Query: 253 TTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSM 312 +E AMGI+V ER + IR I+ E++R+ SHLL G + F FR RE + Sbjct: 244 CMCIEKAMGIEVSERVKYIRTIMDELQRIDSHLLFYSCLAMDLGALTAFFYGFRDREMIL 303 Query: 313 KMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQR 372 M E G R N IGG++ DL + + + ++ +R + E DV QR Sbjct: 304 DMFEETCGGRLIMNYNTIGGVQADLHPNFIPRVKKFIPYLRGIIHEYHDVFTGNVIARQR 363 Query: 373 TVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLK 432 G+G L E A F G RASG A D R P+ Y + + D +R Sbjct: 364 LKGVGVLSREDAISFGCTGGTGRASGWACDVRKRMPYGVYDKVDFKEIVYTEGDSFARYM 423 Query: 433 VRINEVYTALNMIDYGLDNLPGGPL--MVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDN 490 VR++E+ +LN+I+ +DN+P GP+ ++ +P E RG+ + + + Sbjct: 424 VRMDEIMESLNIIEQLIDNIPEGPIQEKMKPIIRVPEGSYYTAVEGSRGEFGVFLESHGD 483 Query: 491 QKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + YR R+ + + RG ++D I G+LD DR Sbjct: 484 KTPYRLHYRSTGLPLVSAVDTICRGAKIADLIAIGGTLDYVVPDIDR 530 >UniRef50_B0R3U3 NADH dehydrogenase-like complex subunit CD n=16 Tax=Halobacteriaceae RepID=B0R3U3_HALS3 Length = 562 Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 132/537 (24%), Positives = 214/537 (39%), Gaps = 18/537 (3%) Query: 16 EAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYK-QGGWLSVLFGNDERKLNGHYAV 74 EA + + ++ + + +V+ L + LS + + + Sbjct: 29 EALIEDHVLEREDHLNAPGFVIRADAVQDVLSTLKTEAGFDHLSCVTAE---EHEDRFES 85 Query: 75 YYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERR 134 Y L +++ V + P + P A W ERE D+ G+ P+ R Sbjct: 86 IYHLRKYDDPTQEVSIIVPTSRDNPVSETAEPVFRTADWHEREAYDLVGVEYDDHPNLER 145 Query: 135 LVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEP 194 ++LPD W L + + D + IGP H + Sbjct: 146 ILLPDTWQGHPLGLDYNQNKPQIVTFDEHKNPLEGHEQAADDSDTMFLNIGPHHPATHGV 205 Query: 195 GHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC-GICGFAHSTAYT 253 H +DGE + D + + Y+HR E++A+ +++ DR G G + AY Sbjct: 206 LHVETVLDGEQVADVNPDIGYLHRCEEQMAQKGTYRHQIMPYPDRWDYGPGGILNEWAYA 265 Query: 254 TSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT--GFDSGFMQFFRVRETS 311 + E+ I VPE AQ++R + E+ R+ H+L LG C F + FM R RE Sbjct: 266 RTAEDLADIDVPEYAQILRTMGGELCRIACHMLALGTFCLDIYGDFTAIFMYAMRDREVV 325 Query: 312 MKMAEILTGARKTYGLNLIGGIRRDLLK---DDMIQTRQLAQQMRREVQELVDVLLSTPN 368 + E LTG R +GG+ D+ + + R ++ + E D++ S Sbjct: 326 QNILEDLTGQRMMLNYLRLGGVVWDIPEPRAEFFESVRDFLDELPERLDEYSDLITSNEI 385 Query: 369 MEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVI 428 + RTV G LD E A+D+ GP+ R SG D R D P+ Y L +V +E G D Sbjct: 386 FQARTVNTGVLDYETAKDYGVTGPVARGSGVDYDVRRDDPYGYYPELDWDVVTEDGGDNY 445 Query: 429 SRLKVRINEVYTALNMIDYGLDNLPGGPLM-------VEGFTYIPHR-FALGFAEAPRGD 480 SRL VR+ EV + +I+ +D L G P V E +G+ Sbjct: 446 SRLLVRMEEVEQSARIIEQCVDLLEGWPEDERDIQANVPRTLKPEAGTETYRTVEGAKGE 505 Query: 481 DIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + +K R++ R+ ++N L+ M G + D +GSLD DR Sbjct: 506 LGVYIRADGTEKPGRFKIRSPCFSNLSALKEMSTGEYIPDLVATLGSLDVILGEVDR 562 >UniRef50_D1Z1Z0 Putative [NiFe]-hydrogenase large subunit n=1 Tax=Methanocella paludicola SANAE RepID=D1Z1Z0_METPS Length = 530 Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 153/534 (28%), Positives = 256/534 (47%), Gaps = 12/534 (2%) Query: 35 VTVKVNYLPEVVEFLYYKQGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEV 94 V ++ + + + V L K+G L G D Y+ M++ ++ I +R + Sbjct: 4 VEIRPDAISDNVTEL-LKRGARLIYASGVDMGVRGIKVNYYFCFDMKEPSEHTI-LRTYL 61 Query: 95 DANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMD 154 D P S+TP A W ERE+ + G+ G P+ L LP +W D++Y + D Sbjct: 62 DRENPVVQSITPITDQADWSERELIEFLGVKVQGHPNPTHLWLPLNW-DDMYLNGRPEAD 120 Query: 155 YRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLF 214 + T + + +P GP H E ++ V+ E + D +L Sbjct: 121 HETERINAAPPATTP-RDNIVTLPVTAIPYGPYHPAFIESNFLKMSVEDEVVKKVDLKLG 179 Query: 215 YVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAI 274 + HR + KL E R Y + FL++R+CG C H+ ++ SVE+ I +P +A++ R + Sbjct: 180 FNHRSVIKLMERRDYYKD-IFLAERICGFCNSHHALSFARSVEDIASIDIPPKAKLARTL 238 Query: 275 LLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIR 334 L E+ER+ SHLL +GL TGF + M RVRE E+++G R T+GL IGGIR Sbjct: 239 LCEMERIQSHLLAVGLIGDLTGFRTMLMHSLRVREEMQDSLEVVSGQRVTHGLITIGGIR 298 Query: 335 RDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMV 394 RD+ + M++ V E D LS + R +G L E + VGP Sbjct: 299 RDITPAQADFILNKLRIMKKSVPEFFDQALSNDVLVGRLENVGVLSLENSVKLGAVGPTA 358 Query: 395 RASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPG 454 R SG D R + P+ Y + ++ +E G D ++R+KV++ EV ++++ + + + Sbjct: 359 RGSGLRIDVRKNSPYEAYEDVDWDIVTENGGDSLARMKVKMREVLMSMHIAEQCCEKIKT 418 Query: 455 GPL-MVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYML 513 P + +P A+ +E PRG+ ++ + R R T+ + ++ Sbjct: 419 APAGLATKVNELPCGEAISKSEPPRGELLYHVASNGTNTPDFVRIRVPTFLTAHIMLRLI 478 Query: 514 RGNTVSDAPLIIGSLDPCYSCTDRMTVVDVRKKKSKVVPYKELERYSIERKNSP 567 +G V D P IIGS+DPC+SCTDR+ ++ + + VV + L ++ K +P Sbjct: 479 QGGWVGDVPAIIGSIDPCFSCTDRVAII--KNNEKSVVDMRTL----VDHKRTP 526 >UniRef50_C6NSM4 NADH dehydrogenase I, B/C/D subunits n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NSM4_9GAMM Length = 565 Score = 441 bits (1134), Expect = e-122, Method: Composition-based stats. Identities = 148/570 (25%), Positives = 233/570 (40%), Gaps = 49/570 (8%) Query: 10 YLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYK---QGGWLSVLFGNDER 66 AL + F D L ++ L + +L L L DER Sbjct: 3 LAEALQKEFS--ATPFTAACDDCLDFSLPTANLKPCLRYLRDDWRSPYRCLWDLTAMDER 60 Query: 67 KLNGHYA-VYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLI 125 G + +Y++ + G + +RV + A + PS+T A W EREV D++GL Sbjct: 61 PSGGGFTLIYHLFNYAVGE--LLRLRVPLPAGQETAPSLTDLYANANWYEREVYDLFGLR 118 Query: 126 PVGLPDERRLVLPDDWPDELYPLRKDSM-----------DYRQRPAPTTDAETYEFINEL 174 G PD RR++LP W +PLRK+ D + + L Sbjct: 119 FAGHPDLRRILLPPQW--RGHPLRKEEAIRATERPPIVIDREHLQERLGEYQRSPDGQAL 176 Query: 175 GDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVT 234 D + V+ +GP H + + L + GE I+ D + Y HRG+EK+AE Y+ Sbjct: 177 DDGETMVLNVGPHHPGTHGILRYILRLRGEEIVAVDPDIGYHHRGVEKIAEG-HSYHNFI 235 Query: 235 FLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHF 294 +DRV + G Y ++E I VPERA+ IR +L E+ R+ SHL+ LG + Sbjct: 236 PYTDRVDYLGGVLGEWPYLRAIEKLAAIHVPERAEGIRTLLAELCRISSHLVWLGSYGND 295 Query: 295 TGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRR 354 G FR R +++ E TG R IGG+ DL + L +++ + Sbjct: 296 LGTMGPAFYAFRDRAWLLELMERFTGGRLHPQFFRIGGVADDLPEGWRSDLLALLRRIEK 355 Query: 355 EVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGL 414 + + + + P RT G+G + E A + ++R++G A D R P+ Y Sbjct: 356 GLPDSERLTVENPIFRARTEGVGVVTAEQAERWCATSILLRSTGRAFDLRKAAPYGLYDR 415 Query: 415 LPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTY---------- 464 + EV D SR + I E+ ++ ++ D LP GP + Sbjct: 416 VDFEVPVTTAGDAWSRTWLHIAEIRESIRILRQLADILPEGPTLACDAPLALMPKSRTLL 475 Query: 465 -----------------IPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWP 507 P ALG E+ RG ++ ++ K YR R R ++A+ Sbjct: 476 DIETLIHHFEQMADAFGPPPGSALGLGESARGLLGYFVVSDGGPKPYRLRVRTGSFAHVQ 535 Query: 508 TLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + + RG + D IGSLD + DR Sbjct: 536 MITELGRGLRLPDFIATIGSLDYVLADLDR 565 >UniRef50_A0RMD1 NADH-quinone oxidoreductase subunit C/D n=5 Tax=Bacteria RepID=NUOCD_CAMFF Length = 561 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 128/570 (22%), Positives = 224/570 (39%), Gaps = 51/570 (8%) Query: 10 YLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYK-QGGWLSVLFGND--ER 66 L + F VL H+ T L+V + N + E V F+ L+ + D Sbjct: 1 MLEKFSSKF--NVLKHS-TTNGLLSVQINPNDIYEAVLFVRDNIGFEILADIVCVDNLYI 57 Query: 67 KLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIP 126 +++YY+ I + +++ SV +A WGERE D +G+ Sbjct: 58 DKEKRFSLYYIFRKISSENLCIYIDIDI---NQSVKSVESIYKSANWGERECFDQFGVKF 114 Query: 127 VGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGD---------- 176 P+ +R++ D+ + YPLRKD + + +D E NE+ Sbjct: 115 ENHPNLKRILNHKDF--QGYPLRKDYPITKYQVLYESDDLVGEMKNEMQRAGLASEENDE 172 Query: 177 --KKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVT 234 K + IGP H + + +DGE II + Y+HRG EK E Y ++ Sbjct: 173 FKTKYTFLNIGPSHPATHGTIRNFVALDGEKIISCVTEIGYLHRGFEKACEN-HSYAQII 231 Query: 235 FLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHF 294 +DR+ ++ Y +VE A+G+ +P+R +R IL E+ R+ H + LG Sbjct: 232 PYTDRLNYCSAMLNNVGYAKAVEEALGLNLPDRGIFMRVILGELARIIDHEVCLGAMFVD 291 Query: 295 TGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRR 354 G + + + RE LTGAR T IGG+ D + + + + Sbjct: 292 MGGLTNYWYLYNPRERIYNFLSKLTGARFTNSFARIGGMANDFYDGWKEELLAHLKDVEK 351 Query: 355 EVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGL 414 V + + ++ R I +++ A + GP +RASG + D R D P+ Y Sbjct: 352 GVDDTMILIEKNRIFLDRVQNICKINANDALSYGFSGPNLRASGVSFDLRKDKPYYYYDS 411 Query: 415 LPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFT----------- 463 V D+ R+ VR E+ ++++I + +P G + V+ Sbjct: 412 FDFSVPVGSEGDIYDRMFVRFFEMRESISIIRQAIKLIPEGKISVDDKDVFLPSKDQVYS 471 Query: 464 ----------------YIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWP 507 +P+ +E G+ + + YR + R + Sbjct: 472 NIESLINHFKLIFDGIKLPNGHFYSASEGANGELGFFIFSNSEPNPYRVKLRPPCFYALN 531 Query: 508 TLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 M++G+ ++D+ L +GSL+ DR Sbjct: 532 AFSSMVQGSLIADSILNLGSLNIIAGELDR 561 >UniRef50_B8I2P5 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=2 Tax=Clostridium RepID=B8I2P5_CLOCE Length = 530 Score = 435 bits (1118), Expect = e-120, Method: Composition-based stats. Identities = 165/534 (30%), Positives = 274/534 (51%), Gaps = 9/534 (1%) Query: 6 LGQHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVLFGNDE 65 + L + +L+ ++++ + + + E +Y L LF ND Sbjct: 2 VSAAILDTIKRLLSSHILESRLINENEIYFCISPSTVKEDCINVYKNIECVLVGLFANDT 61 Query: 66 RKLNGHYAVYYVLSMEKGTKCWITVRVEVDANK-PEYPSVTPRVPAAVWGEREVRDMYGL 124 ++ VYY ++ + + IT+ +++ + + S+ VPAA ERE+ DMYG+ Sbjct: 62 TPIDNKLTVYYTFAV-RSSNTLITLYSKLENDGSAKVDSIALEVPAASLYEREIHDMYGI 120 Query: 125 IPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPI 184 + LPD R LV ++P +++PLR++ P + E + + + VP+ Sbjct: 121 VFEELPDSRELVHHGNFPLDVHPLRRNFKSNTHLPFQQRELEF----STITGEGVFEVPV 176 Query: 185 GPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGIC 244 GP+H EPGHFR V GE II+ + +L+YVHRG+EKL E + Y +V S+R+ G Sbjct: 177 GPVHAGIIEPGHFRFSVAGEPIINLEAKLYYVHRGLEKLCENQH-YMKVLLFSERISGDE 235 Query: 245 GFAHSTAYTTSVENAMGIQ-VPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQ 303 F +S A+ ++E GI +PERA R + E+ER+ HL ++ C T + Q Sbjct: 236 TFTNSLAFCQAIEKLNGITYIPERAVYSRVLFAELERICGHLGDIQGLCVDTAYIFPSGQ 295 Query: 304 FFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVL 363 F +R + E LTG+R N GG+RRD ++ + + ++ +E +E V ++ Sbjct: 296 FAMMRRWIQLLNEQLTGSRFLRNTNKPGGLRRDFVRSNEKIILECINKLDKEFKETVAII 355 Query: 364 LSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQ 423 + R G L+ IA D + VGP RASG D R + P+ Y L V Sbjct: 356 KNNGMFIDRVEHTGILENSIAVDLNVVGPGGRASGVKTDVRKEFPYAAYSKLKFNVPEHS 415 Query: 424 GCDVISRLKVRINEVYTALNMIDYGLDNLP-GGPLMVEGFTYIPHRFALGFAEAPRGDDI 482 CDV R+ V+I EV ++N+I L+ +P GP+ V+ P+ +A G E+PRG+++ Sbjct: 416 NCDVNCRMNVKIEEVIESINIIKQVLEKMPEEGPVSVDIGELKPYSYAFGMTESPRGENL 475 Query: 483 HWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 H+ MTG+N ++R++ R ++ NWP L + + NT++D PLI S + Y+ D Sbjct: 476 HFVMTGENNTIFRYKVRTPSFCNWPALCHAVNTNTLTDFPLINKSFNLSYAGND 529 >UniRef50_Q24ST8 Formate hydrogenlyase subunit 5 n=2 Tax=Desulfitobacterium hafniense RepID=Q24ST8_DESHY Length = 554 Score = 430 bits (1107), Expect = e-119, Method: Composition-based stats. Identities = 177/529 (33%), Positives = 261/529 (49%), Gaps = 25/529 (4%) Query: 29 TKDQLTVTVKVNYLPEVVEFLYYKQGGW--LSVLFGNDERKLNGHYAVYYVLSMEKGTKC 86 TK++ V +K LPEV+E L+ K L GNDER L + +Y +L Sbjct: 31 TKNEGLVWLKPACLPEVMEQLWLKVPSRPLLMTHVGNDERSLGHGFVIYLLLHFPGD--- 87 Query: 87 WITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELY 146 T+ + + +PS+T PA W EREVRD+ GL P G PD R LVL W Y Sbjct: 88 -FTLTLGARGIEKSFPSLTLLCPALNWPEREVRDLLGLHPDGHPDPRPLVLHPGWTGGFY 146 Query: 147 PLRKDSMDYRQRPAPTTDAETYEFINELGDK---------KNNVVPIGPLHVTSDEPGHF 197 PLRK + E + ++ +P+GP+H EPGHF Sbjct: 147 PLRKPCPETPASIGGECPGEALKEVSFNPQPLSFTEAEGEGTFEIPVGPVHAGIIEPGHF 206 Query: 198 RLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVE 257 R GE ++ D +LFY H+G+EKL E + E + +RVCG+C +H+ AY +VE Sbjct: 207 RFQTIGETVLHLDAQLFYTHKGIEKLLEGK-DLEEGLKIVERVCGVCAVSHALAYCEAVE 265 Query: 258 NAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEI 317 G++VP R +L E+ERL++H+ ++G C GF G + + +E ++ Sbjct: 266 KLKGMEVPRWILGWRTVLAELERLYNHVGDIGNLCAGVGFALGNVNALQNKEQLQRLNHQ 325 Query: 318 LTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIG 377 L G R G GG+++ ++ ++ ++ ++ +E + ++ QR + G Sbjct: 326 LFGHRFLRGNITPGGVKKIPQGEERAYLQRRLAELEQDFEEWLPLIQEHDGFRQRAITTG 385 Query: 378 RLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINE 437 L + A D GP RASG ++D R H + Y L ME EQ DV SRL VR+ E Sbjct: 386 VLSKQSALDLGVTGPAARASGISQDWRERHAHLLYEELKMEPQVEQEGDVWSRLMVRVRE 445 Query: 438 VYTALNMIDYGL------DNLPGGPLMVE---GFTYIPHRFALGFAEAPRGDDIHWSMTG 488 V + ++ L D + G + F+ P+ FA G AE+PRG D+ W M Sbjct: 446 VKQSFALLAELLEGDFLQDTVEQGDFDLNGSGAFSPQPYSFAWGCAESPRGTDVIWLMLD 505 Query: 489 DNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 D K+YR R R+A+YANW + ++GN V D PLI S + CYSC DR Sbjct: 506 DEGKIYRCRIRSASYANWAAVPLAVQGNIVPDFPLINKSFELCYSCCDR 554 >UniRef50_Q0W6T4 [NiFe]-hydrogenase, large subunit (EchE-like) n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W6T4_UNCMA Length = 486 Score = 426 bits (1096), Expect = e-118, Method: Composition-based stats. Identities = 151/496 (30%), Positives = 247/496 (49%), Gaps = 15/496 (3%) Query: 61 FGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRD 120 G D+ YY C +R +D P SVT P A W ERE+ + Sbjct: 4 TGVDKGVAGIRVD-YYFGFDHLEPGCHTILRTFLDRENPVLKSVTTLTPQADWSEREMIE 62 Query: 121 MYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNN 180 G+ PD R L LP +W + AP ++ + + + + Sbjct: 63 FLGVRAEEHPDPRHLWLPLNW----------EQMHTDEAAPEKKPQSIQASDHITTMPVS 112 Query: 181 VVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 240 +P GP H E +F++ V+ E + AD +L + HR + KL E R Y + +L++RV Sbjct: 113 TIPYGPYHPAFIESNYFKMAVEDEVVKKADLKLGFNHRSIIKLMERRDYYKD-IYLAERV 171 Query: 241 CGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG 300 CG+C H+ ++ +VEN + VP+RA +IR ++ E+ER+ SHL+ +G+ G+ + Sbjct: 172 CGLCNAHHALSFCLAVENIGQVTVPKRADIIRTMICEMERIQSHLMAIGILGDLVGYKTM 231 Query: 301 FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELV 360 MQF R+RE E+++G R T+GL +GG+RRD+ ++ +++ VQ L Sbjct: 232 LMQFLRIREDIQDSLELVSGQRVTHGLITLGGVRRDITPAQSNFVKRKLASLKKGVQTLY 291 Query: 361 DVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVH 420 D +LS + R +G L PE A VGP R SG D R + P+ Y L ++ Sbjct: 292 DEMLSNNVLIGRLKNVGVLPPEEAVRLGAVGPTARGSGQRLDVRKNTPYAYYENLDWDIV 351 Query: 421 SEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPL-MVEGFTYIPHRFALGFAEAPRG 479 ++ GCD ++R++V++ E ++++++ L+ L P ++ +P ALG E PRG Sbjct: 352 TDNGCDSLARVEVKMREALVSISIVEQCLEKLSTVPPEIITKLEELPCAEALGKTEPPRG 411 Query: 480 DDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMT 539 + ++ + R R T+ + +L G+ V+D P I+GS+DPCYSCTDR+T Sbjct: 412 ELLYHVASNGTNTPEFVRIRVPTFMTAYIMLKLLHGSYVADVPAIMGSIDPCYSCTDRVT 471 Query: 540 VVDVRKKKSKVVPYKE 555 V + K V +E Sbjct: 472 V--HKDAKIVVRSREE 485 >UniRef50_B2V8R2 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=3 Tax=Aquificales RepID=B2V8R2_SULSY Length = 524 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 142/531 (26%), Positives = 267/531 (50%), Gaps = 12/531 (2%) Query: 10 YLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVLFGNDERKLN 69 + L + ++ D+++ T++++ + L +V ++L+ L+ + D+ Sbjct: 1 MVEELLKPIKDLITDYSFNTENEIVIHTSDFNLAKVSQYLFRDLDCELATVVATDDDDRF 60 Query: 70 GH---YAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIP 126 + + YV S + V +V + S+ +PA W ERE+RDM+GL+P Sbjct: 61 SDDRCFTIRYVYSY-HKKNVFFIVENKVKE---RFNSLANIIPALNWYEREIRDMFGLVP 116 Query: 127 VGLPDERRLVL-PDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIG 185 + PD R LVL P+++P +L+PLRKD + + E+ + + +G Sbjct: 117 LNHPDPRPLVLFPENFPSDLHPLRKDFDIKTRPEFKSYGK---YEYKEVEGEGVFNILVG 173 Query: 186 PLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICG 245 P+H EPGHFR + GE+I+ + R F+ HRG+EKLAE + EV + +V G Sbjct: 174 PIHAGIIEPGHFRFSLAGEHILQLEIRHFWKHRGVEKLAEGKT-AEEVLEIVPKVSGDHS 232 Query: 246 FAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFF 305 +AH+ AY ++E ++P+RA+ IR + E+ERL +L ++ + G F Sbjct: 233 YAHTLAYVQAIEKLSNTEIPKRAKYIRVLFAELERLMCNLNDVAWLFQDVAYSFGAQGMF 292 Query: 306 RVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLS 365 ++E M++ + LTG R + IGG+ DL ++ + + + + ++ Sbjct: 293 ILKEEVMRLNKALTGNRFNKNVLKIGGVSVDLNQEKINLIIDKLGYITDKFEFYKKIIFD 352 Query: 366 TPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGC 425 + ++ R GR+ E ++ S +G RAS D R +HP++ Y L + + Sbjct: 353 SASILDRFETTGRILYETVKELSCIGYTARASDLKSDIRKEHPYLIYDKLTFTSQTFEEG 412 Query: 426 DVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWS 485 D +RLK R++++ ++++I L +LP G + + +R+ LG++E RG+ +++ Sbjct: 413 DCFARLKCRLSDIEDSISIIKEVLSDLPDGEIFTQSNPLPANRWTLGYSEGQRGNIMYFV 472 Query: 486 MTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 T K+ R + R ++ NW +++ + G+ V+D PL+ SL+ Y+ TD Sbjct: 473 KTDKEGKIDRLKIRDPSFNNWQAIQWAVLGDIVADFPLVNKSLNLSYAGTD 523 >UniRef50_D2RET0 NADH-quinone oxidoreductase, B subunit n=1 Tax=Archaeoglobus profundus DSM 5631 RepID=D2RET0_ARCPR Length = 709 Score = 415 bits (1066), Expect = e-114, Method: Composition-based stats. Identities = 130/531 (24%), Positives = 231/531 (43%), Gaps = 19/531 (3%) Query: 20 GVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVLFGNDERKLNGHYAVYYVLS 79 VL T + V+ + E L + + + D + + + + Sbjct: 185 EDVLGVRVYTVGKDHYYAFVDDVKRSAEILAHLGFDNVKDVNVLDVPHEDTFIVEFTLHN 244 Query: 80 MEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPD 139 E +T+ + P+ S++ P++ + ERE+ + +G++ G R L Sbjct: 245 YENYK--LVTLAKRISRKNPKVESLSDIFPSSDYMEREMHEFFGVVFEGNKWMGRNFLL- 301 Query: 140 DWPDELYPLRKDSM--------DYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTS 191 D +PLRKD + + + + +E ++ +GP H S Sbjct: 302 DVSTPKFPLRKDFRLESQSIEEERPFLQDFDGNLDVTKLPDEFVKGDEYILVVGPQHPGS 361 Query: 192 DEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTA 251 + +DG+ I D YVHRG+EK+AE+R+ + L +R C + Sbjct: 362 -GHMRLIVKLDGDIIKDVIPDPGYVHRGVEKIAESRIYIKNIP-LVERPCITDFANYDIC 419 Query: 252 YTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETS 311 Y ++E A+GI+V ERA+ IR IL E+ R+ +HL + G+ F G +GFM F +RE Sbjct: 420 YVKAIEEALGIEVSERAKYIRTILAELCRIGTHLYDAGILSIFLGHSTGFMWAFGLREFV 479 Query: 312 MKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQ 371 + ILTGAR T + GG+R D+ + + + R++ MRR +++ + + P + Sbjct: 480 CEALTILTGARVTGSFIVPGGVRWDVSDEKLRRVREIVLAMRRRLEKFEKMFVKNPTVVA 539 Query: 372 RTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRL 431 R +G L + A++ VGP +RAS D R + Y + +V + + D +RL Sbjct: 540 RLENVGILSKKDAKELGIVGPFLRASNVRHDWRL-KGYEAYDCVDWDVVTAEEGDSYARL 598 Query: 432 KVRINEVYTALNMIDYGLDNLPGGPLMVEGFTY----IPHRFALGFAEAPRGDDIHWSMT 487 VR+ E+ ++ +ID + +LP G V+ + +P + E RG ++ Sbjct: 599 LVRVEEINQSIKIIDQLVRDLPSGETKVDMWKLTDLVLPLGEFVSCVEGARGTIYMSIVS 658 Query: 488 GD-NQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + YR+R ++ N +G ++D I GS DR Sbjct: 659 DGESTTPYRFRIVTPSWYNLRGFVEACKGERLADLQAIYGSFGYFPPEADR 709 >UniRef50_Q64DY8 F420H2-quinone oxidoreductase 45 kD subunit n=8 Tax=Archaea RepID=Q64DY8_9ARCH Length = 788 Score = 407 bits (1046), Expect = e-112, Method: Composition-based stats. Identities = 134/592 (22%), Positives = 234/592 (39%), Gaps = 62/592 (10%) Query: 5 KLGQHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQG-GWLSVLFGN 63 G+ + L G+ K+++ + L E L G + + Sbjct: 200 AFGKDLVKNLKAQLNGLYTSITVTDKNRIAIKTSPENLVETSRKLSDTMGVDHVKSVNVI 259 Query: 64 DERKLNGHYAVYYVLSMEKGTKCWITVRVEVD---ANKPEYPSVTPRVPAAVWGEREVRD 120 D + V Y++S + + + + +PE PS+T +A + ERE+ D Sbjct: 260 DVPH-ERKFMVEYMVSGYTEELMPVILTIFTEIGREAEPEIPSLTSLWESANYSERELHD 318 Query: 121 MYGLIPVGLPDER-RLVLPDDWP-----------------DELYPLRKDSMDYRQRPAPT 162 +G+ G + + +L D P +E PL P + Sbjct: 319 FFGVKFKGNEGMKGKFLLAPDTPDTPLRKDFKLEEEQYTIEEGVPLTPTITPPHYMPPSS 378 Query: 163 TDAETYEFINELGDKKNNVV------------PIGPLHVTSDEPGHFRLFVDGENIIDAD 210 + + + + +L V IGP H S + + + G+ I D Sbjct: 379 SLSYSESELEDLKMPAYEDVLKEAEKNDEFVAFIGPHHSGS-GHLRWVMRMKGDIIKDVI 437 Query: 211 YRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQM 270 YVHR MEK+AE R+ V L++R + Y ++ENA+GI+VPERA+ Sbjct: 438 PDPGYVHRSMEKIAENRLYIQNVP-LTERPNISDPINMNLGYVRAIENALGIEVPERAKY 496 Query: 271 IRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLI 330 IR I+ E+ R+ + ++G+ F G +GFM F +RE +++ +TG+R T + Sbjct: 497 IRTIMAELSRIGAFFYDMGIFPLFMGHSTGFMYSFAIREMVLELMVRMTGSRCTPSFIVP 556 Query: 331 GGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNV 390 GGIRRD+ D + +TR+ + + +++ ++ + P + R +G L E A V Sbjct: 557 GGIRRDIPDDVLDRTRKFTTAIHKRLKKYENIFVYNPVLISRMKEVGVLTREEAIRCGIV 616 Query: 391 GPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLD 450 GP +RASG D R P+ Y L E + D + R+ R+ E+ ++ ++ +D Sbjct: 617 GPFLRASGVEYDVRKAEPYEVYDKLDWEATTGDAGDCLGRIFGRLEEMKQSVEIVRQAVD 676 Query: 451 NLPGGP------------------------LMVEGFTYIPHRFALGFAEAPRGDDIHWSM 486 + P V G +P EA RG ++ + Sbjct: 677 AVQEMPRGGVISEEILGDYKEASDDIRGYLYNVYGDLVLPKGEWTSVTEAARGTVLYSII 736 Query: 487 TGD-NQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + + YR R + N + +G V+D + S DR Sbjct: 737 SDGESNVPYRVRIITPCWMNLRGIIEASKGERVADFWTVYASFGYFPPEADR 788 >UniRef50_A8A9X2 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 Tax=Ignicoccus hospitalis KIN4/I RepID=A8A9X2_IGNH4 Length = 540 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 141/537 (26%), Positives = 234/537 (43%), Gaps = 28/537 (5%) Query: 25 HAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVLFGNDERKLNGHYAVYYVLSMEKGT 84 + + L V V+ Y E L + + S+L D V++++ + Sbjct: 8 ERKEWSNALYVEVEPQYWYENAARLKDQGYLFPSMLTAVDWP-AEKKVQVFFLVHRIRDA 66 Query: 85 KCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRL------VLP 138 + + +VD E PS++ P W E E +M+G+ G PD R +L Sbjct: 67 S-SVVLSTKVDRENRELPSLSSLYPGVEWHENETYEMFGINFTGHPDYERWGRIRKLLLS 125 Query: 139 DD---WPDELYPLRKDSMDYRQ-RPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEP 194 +D +P + +PL KDS Y+ + E + E + V +GP H + P Sbjct: 126 EDPRLFPKDRFPLLKDSGGYKDLPKVNWAEIEGTDQEREGLREDLTYVYVGPQHPATHGP 185 Query: 195 GHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTT 254 F L + GE + D RL YVHRG+E + E + Y +V L DR C I G Y Sbjct: 186 VGFLLGLKGEIVEDVIPRLGYVHRGVEWIYEQK-EYLKVIPLLDRQCYIDGIGWEWPYVM 244 Query: 255 SVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKM 314 ++E M ++V RAQ++R + E+ R+ SHLL +G + F R RE + + Sbjct: 245 ALEEIMDVKVDRRAQLLRILAAELSRIQSHLLYIGSFAENVNHLTAFAWTVRDREVFINL 304 Query: 315 AEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTV 374 E+LTG R T+ GG+ DL + ++ + + ++L++ L P + R Sbjct: 305 LEMLTGQRMTFNYLRPGGVAFDLPQGFKDVYEKVVARFHKHFEKLIETTLDNPTVAMRAE 364 Query: 375 GIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGL-LPMEVHSEQGCDVISRLKV 433 G+ ++ E A + GP +RASG A D R + P+ GY + E D + R+ V Sbjct: 365 GVAQVSAEDAIKYGWSGPNLRASGVAWDLRINKPYGGYDDGIDFEGAVGSVGDNLDRMLV 424 Query: 434 RINEVYTALNMIDYGLDNLPGGP--------LMVEGFTYIPHRFALGFAEAPRGDDIHWS 485 R E+ +L +I L L V F P A G+ ++PRG++ Sbjct: 425 RFEEIRQSLKIIRQVLRELTERGQNELGTHLKRVPPFPRKP-GIAYGYHDSPRGENGILL 483 Query: 486 MTGDN-----QKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + + + +R R+ + + +L+Y+ +G + D SLD C + DR Sbjct: 484 VANPSDPKWRTRPWRVHMRSPVFVHTMSLKYLGKGLLLQDFLAFYISLDTCVAEMDR 540 >UniRef50_A1AUU6 Ech hydrogenase subunit E n=3 Tax=Bacteria RepID=A1AUU6_PELPD Length = 409 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 144/390 (36%), Positives = 207/390 (53%), Gaps = 3/390 (0%) Query: 177 KKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFL 236 +PIGP H EP +F + V GE I+ RL Y HRG+EK E R Y + +L Sbjct: 1 MSPVTIPIGPQHPALKEPANFSITVTGEKIVTTSMRLGYNHRGIEKACEER-SYLQCLYL 59 Query: 237 SDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTG 296 +R+CGIC HSTAY +VE G+ +P RA IR+++ E+ER+HSHLL LG+A H G Sbjct: 60 LERICGICSHTHSTAYIQAVEEIAGLTIPPRANYIRSLVGELERIHSHLLWLGVAGHEIG 119 Query: 297 FDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREV 356 FD+ M +R RE M + L G R YG+N +GG+RRD+ + + R + Sbjct: 120 FDTLLMYSWRDRELVMDILAELGGNRVNYGINTLGGVRRDITPEQIEMIRNSVNTLEERT 179 Query: 357 QELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLP 416 + ++V P + R G+G L E A S VGP +RAS RD R D P+ YG L Sbjct: 180 KYYIEVATEEPTLAARLAGVGYLSHEDALLLSAVGPTLRASNVDRDIRRDDPYAAYGSLD 239 Query: 417 MEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEA 476 V ++ CDV R VR+ E+ + MI L+ LP G + V+ IP A EA Sbjct: 240 FRVITDDHCDVYGRTLVRVGELMESFRMIRQILNELPEGEVSVKAPRKIPAGEACSRYEA 299 Query: 477 PRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 PRG+ H+ K R + RA+T+AN + M+ N ++D P+I+ ++DPC+SC D Sbjct: 300 PRGECFHYIRANGTDKPERVKVRASTFANIQAVAKMMENNNLADVPIIVAAIDPCFSCAD 359 Query: 537 RMTVVDVRKKKSKVVPYKELERYSIERKNS 566 R + +++ + EL R +E Sbjct: 360 RCLELLGEG--RQLMEWSELRRRGVEWYRR 387 >UniRef50_A7I7D0 NADH dehydrogenase (Ubiquinone), 30 kDa subunit n=6 Tax=cellular organisms RepID=A7I7D0_METB6 Length = 526 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 163/537 (30%), Positives = 254/537 (47%), Gaps = 13/537 (2%) Query: 1 MSEEKLGQHYLAALNEAFPGVVL-DHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSV 59 M+ + G AA E F + A+ + + + V + L V L + LS Sbjct: 1 MTGKDTGAAATAA-QEIFGSGISGRLAYGSSRECILDVNADELDRAVPGLAARNFV-LSA 58 Query: 60 LFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVR 119 LF G Y + YV S + + ++ + S+ P+A W ERE R Sbjct: 59 LFATPVYAGEG-YILRYVFSHAGS---ILVLSRALNRKQAT--SIATIFPSATWPERECR 112 Query: 120 DMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKN 179 DMYG+ G D RRLVL + P YPL K + T + Sbjct: 113 DMYGIKFEGAFDTRRLVLHETCPAGFYPLEKSVKNAPVATKKTVPPAEEYPFRTVSGDGV 172 Query: 180 NVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDR 239 VP+GP+H EPGHFR V GE + + + RLFY HRG+EKLAE + +++ Sbjct: 173 YQVPVGPVHAGIIEPGHFRFSVIGETVFNLEIRLFYTHRGIEKLAEGKDPA-ACVRVAEA 231 Query: 240 VCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDS 299 V G A++T ++E GI VP+RA IR +L E ER+ SHL +L F Sbjct: 232 VSGDESAANATGLCMAIERLSGITVPDRAWHIRTVLCESERICSHLGDLSGMLTDVAFAL 291 Query: 300 GFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQEL 359 G F +RE + E L+G+R G+ L GGI RD+ + + + R+ + +E + Sbjct: 292 GASHFAVLREEFFREQEKLSGSRFLRGMILPGGISRDIPVETLARYREFLARFAKEFRAG 351 Query: 360 VDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEV 419 + ++LSTP++ R G + + + GP+ RASG RD R D P+ Y Sbjct: 352 LAIVLSTPSVIDRFTQTGIIRKPLLGPLNITGPVARASGSGRDVRVDSPYGMYDRFIPVP 411 Query: 420 HSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRG 479 H DV++R V+ EV +L++I+ + +P GP++ + AL E PRG Sbjct: 412 HPLNDGDVLARFTVKAAEVLDSLSLIEKVIAGMPEGPVISADG--VGDGAALALVEGPRG 469 Query: 480 DDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 +++ W + +++R++ R A+Y NW + + GN ++D P+I SL+ Y+ TD Sbjct: 470 ENLCWVEIRE-GRVFRYKVRTASYCNWLAIEHAAPGNIIADFPVINKSLNLSYAGTD 525 >UniRef50_Q1IS59 NADH-quinone oxidoreductase subunit D 1 n=2 Tax=Acidobacteria RepID=NUOD1_ACIBL Length = 381 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 103/368 (27%), Positives = 170/368 (46%), Gaps = 3/368 (0%) Query: 172 NELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYN 231 D V+ +GP H ++ L +DGE ++ + + Y+HRG+EK+AE R Y Sbjct: 15 KTFLDSNELVLNMGPQHPSTHGVLRVILKLDGERVLGTECVIGYLHRGVEKIAENRT-YV 73 Query: 232 EVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLA 291 + DR+ + ++ Y +VE + +Q P RAQ +R IL E+ RL SH++ LG Sbjct: 74 QFNPYVDRMDYVAAVSNGLGYCEAVEKLIDVQAPPRAQFLRVILTELNRLASHMVWLGTH 133 Query: 292 CHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQ 351 G + FR RE +K+ E GAR T IGG + + + Sbjct: 134 ALDIGALTPLFYTFRDREEVLKIFEKYCGARLTTHAFRIGGCIYEAYEGFEKDVLDYCDK 193 Query: 352 MRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVG 411 + + E +L QRT GIG L+ + GP++RA+G D R P+ Sbjct: 194 LGPRIDEYEGLLTGNRIWLQRTKGIGILNAADCKALGVTGPVLRAAGVKWDLRKAQPYAA 253 Query: 412 YGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFT--YIPHRF 469 Y + +V + + D R VR+ E+ ++ ++ ++ LP GP M + P Sbjct: 254 YDQVDFDVPTGENGDTFDRYMVRMQEMRQSIRILRQAVEKLPAGPTMAKVPKVLKPPVGR 313 Query: 470 ALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLD 529 EAP+G+ ++ ++ + + YR R R ++ N L M+RG ++D +IG+LD Sbjct: 314 IYHSIEAPKGELGYFIVSDGSLQPYRVRVRPPSFVNLQALDKMVRGALIADVVAVIGTLD 373 Query: 530 PCYSCTDR 537 DR Sbjct: 374 IVLGEVDR 381 >UniRef50_Q609T9 Hydrogenase subunit n=1 Tax=Methylococcus capsulatus RepID=Q609T9_METCA Length = 527 Score = 392 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 150/460 (32%), Positives = 226/460 (49%), Gaps = 2/460 (0%) Query: 77 VLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLV 136 V ++ + + ++ +R + + PS TP P A ER RD+ GL +G PD+RR V Sbjct: 69 VNALLEKSGDYLLLRTVLPPGRTGLPSHTPHFPGAARPERHTRDLLGLKFIGHPDDRRWV 128 Query: 137 LPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGH 196 W + +PLR D Q PA T +Y F + G + N +P+GP+H EPGH Sbjct: 129 RHQAWGEREFPLRPDFPLAGQPPAVTAPDRSYGFASAHGPEV-NEIPVGPVHAGIIEPGH 187 Query: 197 FRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSV 256 FR GE +++ + RL YVH+G+EKLA R + L+ RV G H+ A ++ Sbjct: 188 FRFLALGETVLNLEERLGYVHKGIEKLAVGRDP-EGLARLAGRVSGDTTVGHAWAACQAM 246 Query: 257 ENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAE 316 E+A G+ PERA +RAI +E ER+ +HL ++G C+ T F G QF R+RE ++ Sbjct: 247 EHAAGVAPPERALWLRAIFIERERVANHLNDIGAICNDTAFAFGHSQFSRLRELWLRDNL 306 Query: 317 ILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGI 376 G R + GG+ DL + +R E++EL +L + + R VG Sbjct: 307 RWFGHRLLMDRIVPGGVAVDLPAEATSAMPAAMAALRSELEELKPILDESTIFQDRVVGA 366 Query: 377 GRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRIN 436 G L I R+ +G + RA G RD R P Y L ++ + DV +RL VR Sbjct: 367 GVLSERIVRELGCLGYVARACGIGRDVRERAPHAPYDRLGVKAVTRGDGDVAARLYVRYE 426 Query: 437 EVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRW 496 E+ +L+++D L + GPL + T + LG E RG+ + + R+ Sbjct: 427 ELLASLDILDQCLRRIEPGPLRADWRTPPANAEGLGLVEGWRGEIATYVRFDGAGSIVRF 486 Query: 497 RCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 R + NWP L ++ GN V D PL S++ YS D Sbjct: 487 FPRDPSVFNWPALEKLILGNIVPDFPLCNKSVNGSYSGHD 526 >UniRef50_Q0F384 Hydrogenase subunit n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F384_9PROT Length = 532 Score = 390 bits (1003), Expect = e-107, Method: Composition-based stats. Identities = 144/536 (26%), Positives = 234/536 (43%), Gaps = 10/536 (1%) Query: 6 LGQHYLAALNEAFPGVVLDHAWQTKDQL----TVTVKVNYLPEVVEFLYYKQGGWLSVLF 61 + Q E + W + + ++ G L L+ Sbjct: 1 MTQPINTWFVEHLGDCDIHSIWLNDHRPEHMPCLEIRRLDWAHAACEARR-LGMRLVALW 59 Query: 62 GNDERKLNGH-YAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRD 120 G + + +A+Y ++ +R + A PE PS++ AA ER ++D Sbjct: 60 GAEAGCHDRDAHAMYAYMAFAHPEHRHTLLRTPLAAENPELPSISGHYIAACRMERHMQD 119 Query: 121 MYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNN 180 M+G+ +PD R + + WP E YPLR D +A G + Sbjct: 120 MFGIHITDIPDPRPWIKHEHWPREAYPLRVDFDARP---PLLAEAHGDYDYVRSGSEGVY 176 Query: 181 VVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 240 +P+GP+H EPGHFR GE+I++ + RL YVH+G+E+ +++ E ++ R+ Sbjct: 177 EIPVGPVHAGIIEPGHFRFLAVGEHILNMEERLGYVHKGIERAMQSK-SAEEGLKVASRI 235 Query: 241 CGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG 300 G AH+ A+ + E A I VP RA IRAIL E ER+ +H+ ++G C+ F Sbjct: 236 SGDSTVAHAWAFAQACEYAGQIDVPRRASFIRAILCERERIANHIGDIGAVCNDAAFAFM 295 Query: 301 FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELV 360 Q R+RE ++ L G R + GG+ DL + + R+ + EV+ L Sbjct: 296 LHQMHRLREDMARLHLELFGHRLLMNTLIPGGVLVDLGERAIGLLREQTLAIANEVEHLR 355 Query: 361 DVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVH 420 + P+++ R +G G + E A+D +G + RASGH D R + + Y L + V Sbjct: 356 AIYADHPSIQGRVIGSGMVPVEDAQDIGLLGYVGRASGHYPDERIEEAYAPYDELEVNVP 415 Query: 421 SEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGD 480 + DV +R+ VR E+ + +I L+ +P GP++ P E RG+ Sbjct: 416 QGKLGDVATRVWVRFEEIAESSRLISELLEKMPEGPIVANWLPPEPGVSGFAAIEGWRGE 475 Query: 481 DIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 W G+ ++ R R + NW L +R V D PL S + YS D Sbjct: 476 IAAWVRFGEGGQIDRCFVRDPSVINWLGLELAVREVPVPDFPLNNKSFNCSYSGND 531 >UniRef50_C5CEV3 NADH-ubiquinone oxidoreductase chain 49kDa n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CEV3_KOSOT Length = 402 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 126/395 (31%), Positives = 211/395 (53%), Gaps = 5/395 (1%) Query: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235 K +P+GP H +E +F++ +DGE ++D + ++HRG+EK++E +++ F Sbjct: 1 MSKEFNLPVGPFHPLLEEAEYFKIKLDGERVVDIEMETGWMHRGIEKISEE-STFDQSIF 59 Query: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 295 + +R+CGIC +H A + E+ I+VP +A+ IR+++ E+ER+HSHLL LGLA HF Sbjct: 60 VVERICGICSASHPFACINAFEDIGEIEVPLKARYIRSLIGELERVHSHLLWLGLAGHFI 119 Query: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 355 G+D+ +M ++ RE +++ E++TG R YG IGG+RRD + + ++ Sbjct: 120 GYDTLWMWAWKYREPVLEVIEMITGNRNHYGTFKIGGVRRDYDVSLNSVVHEKLDFLEKK 179 Query: 356 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415 + + + + P + R G+G L E A + VGP RASG A D R D P+ Y LL Sbjct: 180 LTMVAKAVANDPVVRSRLCGVGVLTKEEAISYCAVGPTARASGVAIDVRKDEPYAAYDLL 239 Query: 416 PMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPG-GPLMVEGFTYIPHRFALGFA 474 V + D+ ++ VRI EV+ ++ MI ++ L + IP +G Sbjct: 240 DFGVVVREEGDIFAKTVVRILEVFESIKMIRQIIEKLRKVKGPIYNDVKEIPAGEGIGRH 299 Query: 475 EAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSC 534 EAPRG+ H+ T + + R + RA +Y N PT + G ++D + + S+DPCY C Sbjct: 300 EAPRGEVFHYIRTDGSNRPVRHKIRAPSYVNIPTYKASCIGENLADVLITLASVDPCYCC 359 Query: 535 TDRMTVVDVRKKKSKVVPYKELERYSIERKNSPLK 569 T+R + K L + S ++ + +K Sbjct: 360 TERSVRLQTEKGMEIT---SNLLKLSQDKTDRLIK 391 >UniRef50_C9LVK3 Proton-translocating NADH-quinone oxidoreductase, D subunit n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LVK3_9FIRM Length = 365 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 98/365 (26%), Positives = 171/365 (46%), Gaps = 3/365 (0%) Query: 174 LGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEV 233 + +K ++ +GP H ++ L + GE I A L Y+HRG+EKL E+R Y + Sbjct: 1 MAEKSTYILNMGPQHPSTHGVLQVELELSGERIERAKPILGYLHRGIEKLMESRT-YAQC 59 Query: 234 TFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACH 293 +D++ + ++ A+ T+VE GI+VP RA+ +R I E+ R+ SHL+ +G + Sbjct: 60 LPYTDKLDYVSSMNNNLAWCTAVEKLAGIRVPLRAEYLRVIAAELNRIASHLVFIGTLLN 119 Query: 294 FTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMR 353 G + F+ FR RE + + +++ GAR + +GG+ D ++ + +T+ + Sbjct: 120 DLGAATAFVYAFRDREKVLDLFDLICGARMSTSYIRLGGVAFDATEEFIEKTQAFLDYVP 179 Query: 354 REVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYG 413 ++E +++ R G+ + E A+ S G +RA+G A D R P+ Y Sbjct: 180 EMLEEYDNLITGNEIFYARMKGVSPMTAEEAKALSLSGANLRATGVAYDIRRVEPYSVYD 239 Query: 414 LLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLM--VEGFTYIPHRFAL 471 L EV D R +VR+ E+ + +I L +P G V P Sbjct: 240 RLDFEVPVGTLGDDWDRYEVRLKEIGESAKIIRQALKEMPEGSCRKVVSPNLRPPKGSVY 299 Query: 472 GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPC 531 E RG+ + ++ K YR R ++ N L + RG V+D+ ++ +LDP Sbjct: 300 HRVENTRGELGFYIVSDGTAKPYRVHIRRPSFVNLQALDPLCRGTLVADSVVVYSTLDPL 359 Query: 532 YSCTD 536 D Sbjct: 360 MGEVD 364 >UniRef50_Q2K3U2 NADH-quinone oxidoreductase subunit D 2 n=7 Tax=Proteobacteria RepID=NUOD2_RHIEC Length = 404 Score = 387 bits (995), Expect = e-106, Method: Composition-based stats. Identities = 106/397 (26%), Positives = 182/397 (45%), Gaps = 29/397 (7%) Query: 169 EFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRM 228 E + + ++ +GP H ++ L +DGE + D + Y+HRG EKLAE+ Sbjct: 9 RPEGEALNTREVLLNLGPQHPSTHGVLRLVLELDGEFVERVDPHIGYLHRGTEKLAES-F 67 Query: 229 GYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNL 288 Y ++ L+DR+ +C +++ A+ +VE +GI+ P RAQ IR ++ E+ R+ HLL Sbjct: 68 TYTQIFPLTDRLDYLCPPSNNLAFALAVEKLLGIEAPIRAQYIRVMMAELARISGHLLIT 127 Query: 289 GLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQL 348 G G + + R RE M + E++TGAR +GG+R DL + R+ Sbjct: 128 GALPMDLGAMTALLYVMREREMIMDLLEMITGARMHTSFCRVGGVREDLPDGFFPKIREF 187 Query: 349 AQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHP 408 +++ +L RT GIG + E A D GP +RASG D R D P Sbjct: 188 CDIFPNRIRDYERLLEDNRVFLNRTKGIGVISAEDAVDLGLSGPNLRASGVDWDIRRDEP 247 Query: 409 FVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFT----- 463 + Y L V + D +R + R++E+ ++ +I+ +D +P GP ++ T Sbjct: 248 YEIYDRLDFNVITRDEGDCYARWRCRVDEMRESMRIIEQCIDQMPEGPFQIDMPTIAFPL 307 Query: 464 -----------------------YIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRA 500 +P EAP+G+ + ++ + K +R + RA Sbjct: 308 DKDRVHCSMEALIQHFDLSAYGFKVPKGEVYSAIEAPKGELGFYIISDGSPKPFRMKVRA 367 Query: 501 ATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 ++ N L + ++D ++GSLDP + D+ Sbjct: 368 PSFVNLQALFGVTNARYLADMIAVLGSLDPVMAEVDK 404 >UniRef50_C7NUN7 NADH dehydrogenase (Quinone) n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NUN7_HALUD Length = 419 Score = 387 bits (993), Expect = e-106, Method: Composition-based stats. Identities = 130/397 (32%), Positives = 208/397 (52%), Gaps = 8/397 (2%) Query: 173 ELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNE 232 D +P+GP H + EP +F L VDGE I AD +L Y HRG+E+ ++ Sbjct: 1 MSEDVSGTEIPVGPQHPSLKEPANFTLTVDGEVITGADLKLSYNHRGIEQAVLSKSYLEN 60 Query: 233 VTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLAC 292 +L +R+CGIC AH+T++ VE+ + + VP RA IR ++ E+ER+HSH+L LG+A Sbjct: 61 -IYLLERICGICSHAHTTSFAIGVEDLLDLDVPRRANYIRTLIGELERIHSHMLWLGVAG 119 Query: 293 HFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQM 352 H GFD+ + +R RE + + E +TG R Y +N IGG+R+DL + + ++ Sbjct: 120 HEIGFDTLWQYAWRDREIVLDLLEEITGNRIHYSINTIGGVRQDLTAEQRETVLEKMDEL 179 Query: 353 RREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGY 412 + ++ + + + R +G + E+AR++ GP+ RASG D R D P+ Y Sbjct: 180 EERIDFYLETVPNEETVRMRCENVGTVSAELAREYCAAGPVGRASGLPVDVRRDAPYAAY 239 Query: 413 GLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFT------YIP 466 + +V ++ D+++R VRI E+ ++++I ++P G L IP Sbjct: 240 DEMDFDVITDTAGDLLARTTVRIREIAESISIIRQAAADIPDGDLKASPKPVQALLAQIP 299 Query: 467 HRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIG 526 + EAPRG+ IH+ R R T ANWPT+ LRG+ ++D P+++ Sbjct: 300 EDDVVSRYEAPRGELIHYIRADGTDTPERVHIRVPTLANWPTVVEALRGSYIADTPIVVA 359 Query: 527 SLDPCYSCTDRMTV-VDVRKKKSKVVPYKELERYSIE 562 +DPC SCT R+ V D +EL Y +E Sbjct: 360 GIDPCISCTSRIGVETDGSHGGEDSFNLEELREYGME 396 >UniRef50_C0Z770 NADH-quinone oxidoreductase chain D n=2 Tax=Bacillales RepID=C0Z770_BREBN Length = 382 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 101/374 (27%), Positives = 180/374 (48%), Gaps = 4/374 (1%) Query: 166 ETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAE 225 + ++ +GP H ++ + +DGE I +A + Y+HRG EKLAE Sbjct: 9 HVDTSSETGLRTEEMLLNVGPQHPSTHGVFRLVVKIDGETIKEAIPVMGYLHRGTEKLAE 68 Query: 226 TRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHL 285 + Y ++ +DR+ + ++ +VE MG+++PERAQ +R I +E+ R+ SHL Sbjct: 69 N-LTYTQIIPYTDRMDYVSAMTNNYVLCHAVETMMGLEIPERAQFLRLIAMELNRVASHL 127 Query: 286 LNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQT 345 + G G F+ FR RET + + L GAR T+ +GG++ D + + Sbjct: 128 VWWGTFLLDIGAMGPFLYAFRDRETILDLFNELCGARMTFNYMRVGGVKWDAPPGWVDKA 187 Query: 346 RQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRA 405 ++ Q M++E+ ++ R +GIG+ D + A D+S G M+R++G D R Sbjct: 188 KEFVQYMKKELNNYHQLVTGNEIFINRLIGIGKFDTKTALDYSLSGVMLRSTGVKWDLRK 247 Query: 406 DHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLP-GGPLM--VEGF 462 D P+ Y +V + D ++R +R+ E+ +L +++ L+ P G +M V Sbjct: 248 DEPYCIYDRFEFDVPTATEGDCMARYHLRMAEIEQSLRILEQALEQFPSEGEVMGKVPRV 307 Query: 463 TYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAP 522 P E+PRG+ + + K +R + R ++ N L +L+G +S+ Sbjct: 308 IRPPAGETYVRIESPRGEIGCYIASQGKDKPWRLKFRRPSFTNLQILPKLLQGENLSNMV 367 Query: 523 LIIGSLDPCYSCTD 536 I+GS+D D Sbjct: 368 AILGSIDIVLGEVD 381 >UniRef50_B5YKI5 NADH-quinone oxidoreductase subunit D 1 n=12 Tax=Bacteria RepID=NUOD1_THEYD Length = 397 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 107/398 (26%), Positives = 183/398 (45%), Gaps = 31/398 (7%) Query: 170 FINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMG 229 N++ K V +GP H + L ++GE I + Y+HRG+EKL+E + Sbjct: 1 MQNKIKTVKELTVNMGPQHPATHGVLRLVLELEGEVIKKCIPYIGYLHRGVEKLSED-LT 59 Query: 230 YNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLG 289 Y + ++DR+ + ++ + +VE MGIQ+PERA+ IR I+ E+ R+ SHL+ + Sbjct: 60 YVQSLPITDRMDYLSSMVNNVGFCVAVEKLMGIQIPERAKFIRTIMGEMARICSHLVWIA 119 Query: 290 LACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLA 349 G + F+ R RE +++ E++TGAR T +GG+R D+ + + +T + Sbjct: 120 THALDIGAMTVFLYAMRDREYLLELFEMVTGARLTVSYPRVGGVRCDVNNEFLDKTYKFI 179 Query: 350 QQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPF 409 ++ R+V+E ++ +RT G+G + E A ++ GP +R SG D R P+ Sbjct: 180 EEFPRKVEEYETLIDRNRVWLKRTKGVGVISAEEAINWGLTGPTLRGSGVYYDVRKFFPY 239 Query: 410 VGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYI---- 465 Y + EV + D+ R K R+ E + +I ++ LP G ++ E I Sbjct: 240 DAYDKVDFEVPLGKNGDIYDRYKCRMLEFRQSAKIIKQCIERLPDGSILAENALRIRMPE 299 Query: 466 --------------------------PHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCR 499 EAPRG+ + + ++ K YR R R Sbjct: 300 SPLKIDKKDIIFDVYIEDKQIQEFIQKFTEVYASVEAPRGELGFYIVCDNSSKPYRMRVR 359 Query: 500 AATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 A ++ + L + G+ V+D IGS+D DR Sbjct: 360 APSFVHAGVLPKLCEGSLVADVIANIGSIDIVLGECDR 397 >UniRef50_Q3ZW31 Hydrogenase, group 4, HycE subunit n=3 Tax=Dehalococcoides RepID=Q3ZW31_DEHSC Length = 526 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 146/539 (27%), Positives = 244/539 (45%), Gaps = 17/539 (3%) Query: 1 MSEEKLGQHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVE---FLYYKQGGWL 57 M +L + L+ A + L+ L + E L G L Sbjct: 1 MKIPELHNYLAEFLSPAINPLKLEKGANKDYYLWL-----DWTEAAALYPKLAEDGFG-L 54 Query: 58 SVLFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGERE 117 LFG + + ++ Y+ + + +R S+ P+A + ERE Sbjct: 55 IGLFGVEGFRGYQGLSLLYIFEKRNYSGTLVIIR----RADSPVSSIAAIFPSACYFERE 110 Query: 118 VRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDK 177 +RD YG D RRL L + +P +PL + + E ++ + Sbjct: 111 IRDGYGCEFENAFDRRRLFLHETYPANFHPLANSFKNQPLSLPAGVENEALYPFKKISGE 170 Query: 178 KNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLS 237 V +GP+H EPGHFR GE I++ + RLFY HRG+EKLA + + ++ Sbjct: 171 GVYEVGVGPVHAGIIEPGHFRFSAIGEPILNLEVRLFYTHRGLEKLAMGK-DIDFGLKIA 229 Query: 238 DRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGF 297 + + G A++ AY+++VE+ + P RA+ +R ILLE+ERL+SHL +L G+ Sbjct: 230 EGISGDESAANTYAYSSAVEHICSSRPPRRAEQLRLILLEMERLYSHLADLSGMLTDVGY 289 Query: 298 DSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQ 357 G +RE M+ + LTG+R G+ GG+ +D+ + + + Sbjct: 290 PVGAASLSALREELMRWNKRLTGSRFLKGIIAPGGLLKDIPGELITELADYLYAFEGRFS 349 Query: 358 ELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPM 417 E V+ L+ ++ R G ++ + + G RASG A DTR + P+ Y L Sbjct: 350 EQVEKALAKTSVVDRFETTGIVNNRLLIPLNITGVTARASGEAIDTRLNQPYGFYPELSF 409 Query: 418 EVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAP 477 ++ DV++R +VR++EV T+L +I L G + + ++L E+P Sbjct: 410 KLPVLPEGDVMARFRVRLSEVQTSLGLILKTAAKLSAGEYAI--PLKPVNGYSLVLVESP 467 Query: 478 RGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 RG +HW D K+ R++ R A+Y NW + + + G+ + D PLI SL+ Y+ TD Sbjct: 468 RGQSLHWLWLRD-GKIERYKVRTASYCNWQAIEHAVLGDIIPDFPLINKSLNLSYAGTD 525 >UniRef50_B1ZRT0 NADH-quinone oxidoreductase subunit D 1 n=16 Tax=Bacteria RepID=NUOD1_OPITP Length = 426 Score = 383 bits (985), Expect = e-105, Method: Composition-based stats. Identities = 106/403 (26%), Positives = 165/403 (40%), Gaps = 29/403 (7%) Query: 163 TDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEK 222 + +GP H ++ ++ ++GE + AD + Y+HRG EK Sbjct: 25 PVRSGPPDEGGEFSGDRMSLSMGPSHPSTHGVLRIQMELEGEILTKADPIIGYLHRGDEK 84 Query: 223 LAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLH 282 +AE M YN+ +DR+ + A++ AY +VE G+ VP R Q IR I E+ R+ Sbjct: 85 IAEN-MTYNQFVPYTDRLDYLAPLANNMAYVIAVEKLAGLTVPPRCQAIRVITAELARIS 143 Query: 283 SHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDM 342 SHL+ LG G + + RE + E LTGAR T IGG+ RD+ + Sbjct: 144 SHLMGLGAFGLDVGAWTVLVLSLNQREFLYNLFEDLTGARFTTSYTRIGGVTRDVPPGWL 203 Query: 343 IQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARD 402 + ++E++ +L RTVG+G + E A + GP R SG A D Sbjct: 204 ENVGTFCDKFLPALEEILSLLTRNKIFLDRTVGVGVISKEDAIAYGITGPNARGSGIATD 263 Query: 403 TRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGF 462 R D P+ GY +V D R VR E+ ++ +I + N PGG Sbjct: 264 LRKDRPYSGYEQYEFDVPVGTKGDCYDRYLVRGEEMRQSVRIIRQVIKNFPGGDWYATEA 323 Query: 463 TY----------------------------IPHRFALGFAEAPRGDDIHWSMTGDNQKLY 494 +P AE P+G + ++ Y Sbjct: 324 KKVFLPPKGKVLSSMEELIQQFMLVTEGPQMPAGEVYFEAENPKGILGFYIVSKGGGVPY 383 Query: 495 RWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 R + R+ ++ N + + +G +SD I+GSLD DR Sbjct: 384 RLKIRSPSFCNLSLVPKLCQGVLISDVVAILGSLDFVMGECDR 426 >UniRef50_B5YL34 NADH-quinone oxidoreductase subunit D 2 n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=NUOD2_THEYD Length = 401 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 103/393 (26%), Positives = 171/393 (43%), Gaps = 32/393 (8%) Query: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235 V+ +GP H + +GE +I+ + Y+HRG+EKL+E++ Y Sbjct: 10 SDTTFVLQMGPHHPATHGVLKLLCEFEGERVINIKPDVGYLHRGVEKLSESKT-YPGAMT 68 Query: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 295 L+DR+ I ++ Y +VE MGI+ P RA+ IR ++ E+ RL SHLL L Sbjct: 69 LTDRLDYISSMTNNIGYCLAVERLMGIEPPPRAKFIRTMVSEMTRLSSHLLWLATHALDI 128 Query: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 355 G + F+ FR RE ++ E + GAR T IGG+R D+ + + + + M Sbjct: 129 GAMTVFLYAFREREQILQFFEKICGARLTVSYPRIGGVRVDIKEHVLDEIYKFMDLMLIR 188 Query: 356 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415 V E +L RT G+G + PE A GP +R SG D R P+ Y + Sbjct: 189 VDEYETLLTENRIWIARTRGVGVIAPEDAVLLGLTGPALRGSGVYYDIRKQIPYDAYSEI 248 Query: 416 PMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFT------------ 463 EV + D R RI E+ ++ ++ ++ +P G ++ + Sbjct: 249 DFEVPLGEKGDTYDRYLCRIREMRQSVLIVKQCIEKMPEGKILSDKSPDIDLPHQAKRKI 308 Query: 464 -------------------YIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYA 504 +P EAP+G+ + ++ + + YR R RA ++ Sbjct: 309 EPGDSLWNGFIAFSEEKQEIMPKGEIYSAIEAPKGELGFYIVSDGSGRPYRMRVRAPSFI 368 Query: 505 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + + + G+ ++D IIG+LD DR Sbjct: 369 HISAIPKLCEGHLLADVIAIIGTLDIVMGEADR 401 >UniRef50_Q2RJU4 NADH-quinone oxidoreductase subunit D n=94 Tax=Firmicutes RepID=NUOD_MOOTA Length = 371 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 92/364 (25%), Positives = 166/364 (45%), Gaps = 3/364 (0%) Query: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235 + + +GP H ++ L +DGE ++ + + Y+HRG+EKLAE R Y +V Sbjct: 9 RTEEIQLNMGPQHPSTHGVYRALLTLDGEKVVGVENIIGYLHRGIEKLAEDRT-YTQVIP 67 Query: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 295 +DR+ + G ++ Y +VE +G++VPERA+ +R I+ E+ RL SH++ + Sbjct: 68 YTDRLDYLAGMLNNLGYVQTVEKLLGLEVPERAEYLRVIMAELSRLASHMVMVASMALDL 127 Query: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 355 + + FR RE + + E+ G+R T IGG+ D+ + + R Sbjct: 128 SGWTAWFPPFRERERILDLFEMTCGSRLTVSYMRIGGVAADIPPGFLPALESFLNDLPRM 187 Query: 356 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415 + E+ ++ + R G+G++D E A + GP +RA G D R P+ Y Sbjct: 188 IAEMNGLITGNEIFKARCQGVGKIDLETALAYGITGPNLRACGLPFDLRKARPYSIYDRF 247 Query: 416 PMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFT--YIPHRFALGF 473 ++ + D R +R+ E+ + +I ++ LP GP+ + +P Sbjct: 248 DFDIPTLNNGDSYDRFVIRLLEMEQSARIIRQAMEQLPDGPVQAKVPRVLKLPRGEVYHQ 307 Query: 474 AEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYS 533 E +G + ++ K YR + ++ N L + G T+ D + I S+D Sbjct: 308 IEGAKGILGFYLVSDGGSKPYRLHIHSPSFVNLGALPRISVGGTIQDFVVNIASIDIVLG 367 Query: 534 CTDR 537 DR Sbjct: 368 EVDR 371 >UniRef50_B2HHH7 Formate hydrogenase HycE n=3 Tax=Actinomycetales RepID=B2HHH7_MYCMM Length = 498 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 147/507 (28%), Positives = 230/507 (45%), Gaps = 24/507 (4%) Query: 36 TVKVNYLPEVVEFLYYKQGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVD 95 TV L E V L + L+++ +D+ VY +++ + + +T+R Sbjct: 9 TVSDAELAESVAELLAEGY-RLALVAAHDDGDALR--VVYLLVAGQPDRRVELTLRTGA- 64 Query: 96 ANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDY 155 P PS+ A ERE+ D+YG+ PVG P RRLV WP + +P+R+D+ D Sbjct: 65 -ANPSVPSLAELSIPAGRFEREMMDLYGISPVGHPQPRRLVRHAHWPQDWHPMRRDAGDP 123 Query: 156 RQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFY 215 DA + +P+GP+H EPGHFR V GE+I+ RL++ Sbjct: 124 PP-----FDAVGRFPFVTVEGPGVYEIPVGPVHAGLIEPGHFRFSVIGESILRLKARLWF 178 Query: 216 VHRGMEKLAETRMGY--NEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRA 273 VHRG+EKL E R E L++R+ G AHS A+ +VE+A+G+ VPE +RA Sbjct: 179 VHRGVEKLFEGRNALGAREAVELAERISGDSSAAHSLAHCLAVEDALGLDVPEPVHRLRA 238 Query: 274 ILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGI 333 +L+E+ERL++H+ +LG + GF +RE +++ +TG R GG+ Sbjct: 239 LLVELERLYNHVTDLGALANDVGFALANAHAQGIRERVLRINRRVTGHRLLRAAMAPGGV 298 Query: 334 RRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPM 393 L D + EV E+ ++ L + R L E AR +G + Sbjct: 299 VLQELPDPAE-----LHAVAAEVAEISELTLRNSVVYDRFAETAVLHSEDARALGCLGYV 353 Query: 394 VRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLP 453 RASG A D R DHP LP+ + G DV++R +R +E ++ + + ++N Sbjct: 354 ARASGIATDARLDHPTA---ELPVTAVAAGGGDVLARYTIRRDEFAASVALACHLVENHH 410 Query: 454 G----GPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTL 509 G P +G E RG +H ++ R + ++ NWP L Sbjct: 411 GRTRFAPPPAANGARSAVTSGVGIVEGWRGAVLHRVEVDGAGRITRCKIVDPSWFNWPAL 470 Query: 510 RYMLRGNTVSDAPLIIGSLDPCYSCTD 536 + V D PL S + Y+ D Sbjct: 471 PVAMADTIVPDFPLANKSFNLSYAGND 497 >UniRef50_A8VSQ7 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=2 Tax=Firmicutes RepID=A8VSQ7_9BACI Length = 371 Score = 382 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 106/371 (28%), Positives = 179/371 (48%), Gaps = 6/371 (1%) Query: 171 INELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGY 230 + ++ + +GP H ++ +L VDGE I A + Y+HRG EKLAE Y Sbjct: 1 MPNELKTESMTLNMGPQHPSTHGVFRLQLEVDGETIQKATPIMGYLHRGSEKLAEG-FLY 59 Query: 231 NEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGL 290 + +DR+ + ++ Y ++E + +VPERA+ +R I +E+ R+ SHL+ G Sbjct: 60 TQFIPYTDRLDYMNAMTNNYVYCQTIEKLLDWEVPERAEYLRVITMELNRIASHLVWWGT 119 Query: 291 ACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQ 350 G S F+ FR RET + ++GAR T+ + IGG++ D + + + + Sbjct: 120 YLLDIGAMSPFLYAFRDRETILDRLNEISGARMTFNYHRIGGVKWDAPEGWIDNVLETVE 179 Query: 351 QMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFV 410 +++ + E ++ + RT+G+G L E ++ GP+ R SG D R P+ Sbjct: 180 ELKHNISEFDTLVSGNEVFQARTIGVGVLSKEKVLNWGLSGPLARGSGVEVDVRKTEPYS 239 Query: 411 GYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLM-----VEGFTYI 465 Y +V EQ DV +R KVRI E++ +L +I+ NLP G ++ Sbjct: 240 VYDHFDFDVPVEQEGDVYARYKVRIREMHESLKIIEQACKNLPEGDIIHKKGKKIMMIKP 299 Query: 466 PHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLII 525 P AEA +G+ ++++ K YR + R ++ N L+ ML G ++ + I Sbjct: 300 PEGEVYTRAEASKGEIGVYAISNGKNKPYRVKLRRPSFVNVSILQDMLIGESIQNLVAIF 359 Query: 526 GSLDPCYSCTD 536 GSLD D Sbjct: 360 GSLDVVLGEVD 370 >UniRef50_Q2S5J0 NADH-quinone oxidoreductase subunit D n=5 Tax=Bacteria RepID=NUOD_SALRD Length = 451 Score = 381 bits (978), Expect = e-104, Method: Composition-based stats. Identities = 107/434 (24%), Positives = 188/434 (43%), Gaps = 30/434 (6%) Query: 133 RRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVV-PIGPLHVTS 191 R ++ E + ++ ++ A +E+ +N ++ IGP H + Sbjct: 19 RFWPKHNEKIYERLENKHAWLEEKRAAAQGDGKPPATQRSEVDPLENEMILNIGPQHPAT 78 Query: 192 DEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTA 251 + +DGE I + + Y+HRG+EKLAE + Y E +DR+ + ++++ A Sbjct: 79 HGVLRCVVKMDGETIEKSVLDIGYLHRGIEKLAEHKT-YQEFMPYTDRMDYLSPYSNNVA 137 Query: 252 YTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETS 311 + +VE I+VPERAQ IR I+ E+ R+ SH L LG+ G SGF+ F+ RE Sbjct: 138 WCLAVEKLADIEVPERAQWIRMIMSELARISSHCLWLGVGMMDAGAVSGFVWTFQEREEI 197 Query: 312 MKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQ 371 + + + GAR T + IGG+ D + R + +L + Sbjct: 198 YSIMDEVAGARFTVSHSRIGGVANDFSPRAIEMIRDFVDTFPDRIAGWEGLLNKNRIWVE 257 Query: 372 RTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRL 431 R G+GR+ E A + GP +R SG D R P++ Y + + + D ++R Sbjct: 258 RNKGVGRVTKEEALELGLTGPNLRGSGVPYDVRRFEPYLKYDEVDFTIPVREEGDCLARY 317 Query: 432 KVRINEVYTALNMIDYGLDNLPGGPLMVEGFT---------------------------- 463 +R++E+ ++ +I+ LD + GP+ + Sbjct: 318 FLRLDEMKQSVRIIEQCLDRMTEGPIRSDDAKEAYPSKEEVYYSMEGMIHDFMYTDVGTV 377 Query: 464 YIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPL 523 + E P+G+ + + + +R R A ++ N + +ML G V+D + Sbjct: 378 PPKGAHSYHAIEGPKGELGFYLTSDGTGRPWRVRINAPSFTNLQAMEHMLEGEMVADTVV 437 Query: 524 IIGSLDPCYSCTDR 537 IIGSLDP D+ Sbjct: 438 IIGSLDPVMGEADK 451 >UniRef50_B9L172 NADH dehydrogenase I, D subunit n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L172_THERP Length = 409 Score = 380 bits (977), Expect = e-104, Method: Composition-based stats. Identities = 114/405 (28%), Positives = 182/405 (44%), Gaps = 29/405 (7%) Query: 161 PTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGM 220 T E ++ V+ +GP H ++ RL ++GE +I D + Y+HRG+ Sbjct: 6 QPTPVILSEVRQITPTRRELVLNMGPQHPSTHGVLRVRLTLEGETVIACDPVIGYLHRGV 65 Query: 221 EKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVER 280 EKL E+ Y + +DR + +++ Y +VE GIQ PERAQ R I+ E+ R Sbjct: 66 EKLGESHR-YAQFVPWTDRTDYVAAPSNNLGYVLAVEKLCGIQAPERAQYWRMIMAELTR 124 Query: 281 LHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKD 340 + SHL+ LG G S + FR RE + + E GAR T + IGG R++ D Sbjct: 125 IASHLVWLGTHALDIGALSVSLYTFRDRELILDIFEKFCGARLTTNMMEIGGFSREIPPD 184 Query: 341 DMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHA 400 R+ + + +++ D+L P RT G+G ++P++A ++ G +R SG Sbjct: 185 LPEMVREFCRYFPKAIRQYEDLLTENPIWLARTKGVGVIEPDVAINYGLTGACLRGSGVN 244 Query: 401 RDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLP-GGPLMV 459 D R P++ Y + EV DV R VRI E+ AL +I+ L+ +P GPLM Sbjct: 245 YDVRKAMPYLLYDRVEFEVPLGTHGDVYDRYLVRIEEMRQALRIIEQCLEQVPTDGPLMA 304 Query: 460 EGFTY---------------------------IPHRFALGFAEAPRGDDIHWSMTGDNQK 492 Y P E +G+ ++ ++ + Sbjct: 305 YESPYVIPPHKTVMTTAEDMQRHFIWVIKGFSPPKGEVYHAVEHSKGELGYYIVSDGSPI 364 Query: 493 LYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 YR R R + N +L YM +G ++D +IG++D DR Sbjct: 365 PYRVRIRTPDFVNLQSLPYMAQGAMLADIVALIGTIDIVLGSVDR 409 >UniRef50_Q979M3 NADH dehydrogenase I chain D n=6 Tax=Thermoplasmatales RepID=Q979M3_THEVO Length = 369 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 93/370 (25%), Positives = 174/370 (47%), Gaps = 7/370 (1%) Query: 174 LGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEV 233 + ++ V GP H + ++ +DGE + D + + Y+HR EK+ E + + + Sbjct: 1 MVMEEWTEVNFGPQHPSMHGVLRLKVKLDGEIVKDVEPIIGYLHRNAEKICELQFYCDNM 60 Query: 234 TFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACH 293 + DR+ + Y + E + ++ P RA+ IR ++ E+ R+ SHL+ LG Sbjct: 61 IYF-DRMDYVAAMNMEIGYLEAAEKLLDVEPPGRAKWIRVMMGELNRIASHLVWLGAFGL 119 Query: 294 FTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMR 353 G + F F+ RE +K+ ++G+R+ IGG+ +D+ + + +Q + Sbjct: 120 DLGMLTPFFYCFKEREKILKIFTEVSGSRQQLNYMSIGGVYQDVTDEALDHIKQFITEFP 179 Query: 354 REVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYG 413 +E+ + ++ + RT G+G L E+A D+ GPM+RASG D R P++ Y Sbjct: 180 KELNMIANLFVKNDIFLSRTKGVGILSKEMAIDYGVTGPMLRASGVEYDVRKAEPYLVYD 239 Query: 414 LLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYI------PH 467 + ++ D ++R VRI E+ ++ +ID + LP GP + Sbjct: 240 KVNFDIPVSFKGDNLARFLVRIEEMRQSVKIIDQTIQKLPAGPYFNQKAKKPLMIRLRGQ 299 Query: 468 RFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGS 527 E+P+G+ + + + + YR R R+ T+ N L + +G ++D I GS Sbjct: 300 GEVYARTESPKGEFGVYIVGDGSLRPYRVRVRSPTFKNLSVLPALAKGQMIADLISIGGS 359 Query: 528 LDPCYSCTDR 537 +D + DR Sbjct: 360 IDLVFGEVDR 369 >UniRef50_A9B4Z7 NADH-quinone oxidoreductase subunit D 1 n=9 Tax=Bacteria RepID=NUOD1_HERA2 Length = 422 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 102/419 (24%), Positives = 178/419 (42%), Gaps = 31/419 (7%) Query: 149 RKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIID 208 D A + +++ V+ +GP H ++ + ++GEN++ Sbjct: 5 AHAYPDIEIPTPSQIAAVALNNEPDENGEQSMVLSMGPQHPSTHGVLRLAVELNGENVVQ 64 Query: 209 ADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERA 268 + ++H G+EK ET+ Y + L+DR+ + +++ Y ++E M VPERA Sbjct: 65 LAPDVGFLHTGIEKTIETKT-YTKSIVLTDRMDYLAPMSNNMVYVAAIEKLMQQDVPERA 123 Query: 269 QMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLN 328 Q +R +LLE+ R++SHL+ LG S F R RE + + E+LTGAR Sbjct: 124 QTLRVLLLELTRINSHLVWLGTHALDLAAMSVFFYAMREREYILDIFEMLTGARMMTSYF 183 Query: 329 LIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFS 388 +GG+ D+ D + +V E D+L + +QRT G+G ++ A Sbjct: 184 RVGGLAWDIPADFIPTVEDFLTHFLPKVDEYEDLLTNNLLWKQRTKGVGVVNAADAIALG 243 Query: 389 NVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYG 448 G +RASG D R P+ GY +V Q D+ R + R+ E+ ++ + Sbjct: 244 LSGANLRASGVDWDLRKTMPYSGYETYQFDVPVGQAGDIYDRYRCRVQEMRESVKIARQA 303 Query: 449 LDN---LPGGPLMVEGFT---------------------------YIPHRFALGFAEAPR 478 ++ + G P + E P A E+PR Sbjct: 304 IERVKQMHGQPYVTENRKVAPPPKSEITYSMESLIHHFKLWTEGFRPPRGSAYAAIESPR 363 Query: 479 GDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 G+ + ++ K +R RA ++ N L ++ +G ++D +I S+DP DR Sbjct: 364 GEIGCYVVSDGTPKPWRVHFRAPSFINLQALPHIAKGKLMADLVALIASIDPVLGEVDR 422 >UniRef50_D1C6X3 NADH dehydrogenase I, D subunit n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C6X3_SPHTD Length = 410 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 110/404 (27%), Positives = 180/404 (44%), Gaps = 29/404 (7%) Query: 162 TTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGME 221 T E ++ V+ +GP H ++ RL ++GE I D + Y+HRG+E Sbjct: 8 PTPVIISEERQISDTRREMVLNMGPQHPSTHGVLRVRLTLEGETITACDPVIGYLHRGVE 67 Query: 222 KLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERL 281 K+ E++ Y + T +DR + +++ Y +VE +GI+ PERAQ R I+ E+ R+ Sbjct: 68 KIGESKR-YAQFTPWTDRTDYVAAPSNNLGYVLAVEKLLGIEAPERAQYWRMIMGELARI 126 Query: 282 HSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDD 341 SHL+ LG G S + FR RE + + E GAR T + IGG R + Sbjct: 127 ASHLVWLGTHALDIGALSMSLYCFRERELILDIFEKFCGARLTTNMMEIGGFSRPIPAGL 186 Query: 342 MIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHAR 401 R + + +E D+L + P RT G+G ++P++A ++ G +R SG Sbjct: 187 PEMIRDFLKVFPQRQREYEDLLSANPIWLARTRGVGVIEPDVAINYGLTGACLRGSGVNY 246 Query: 402 DTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLP-GGPLMVE 460 D R P++ Y + EV DV R VR+ E+ +L +I+ LD +P GPL + Sbjct: 247 DVRKAQPYLLYDRIDFEVPLGTQGDVYDRYLVRMEEMRQSLKIIEQCLDQVPTDGPLKLA 306 Query: 461 GFTY---------------------------IPHRFALGFAEAPRGDDIHWSMTGDNQKL 493 Y P E +G+ ++ ++ + Sbjct: 307 ESNYVIPPHETVLTTAEDMQRHFIWVIKGFSPPKGEVYMSIEHSKGELGYYIVSDGSPVP 366 Query: 494 YRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 YR R R + N +L Y+ G ++D +IG++D DR Sbjct: 367 YRLRIRTPDFVNLQSLPYLAEGAMLADVVALIGTIDIVLGSVDR 410 >UniRef50_C6A407 Membrane-bound hydrogenase MBH 1, subunit Mbh1L (NiFe hydrogenase catalytic subunit) n=4 Tax=Thermococcus RepID=C6A407_THESM Length = 430 Score = 377 bits (967), Expect = e-103, Method: Composition-based stats. Identities = 137/402 (34%), Positives = 213/402 (52%), Gaps = 16/402 (3%) Query: 179 NNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSD 238 +PIGP+H +EP F + +DGE II D +L Y RG+E +A R Y ++ +L + Sbjct: 8 WVKIPIGPIHPALEEPEKFIITLDGERIIHVDIKLGYNLRGLEWIAM-RRNYIQLLYLVE 66 Query: 239 RVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFD 298 R+CGIC F+H+ YT +VE GI+VPERA+ IRAI+ E+ER+HSHLLNLG+ H G+D Sbjct: 67 RICGICSFSHNHTYTRAVEEMAGIEVPERAEYIRAIIGELERIHSHLLNLGVVGHAIGYD 126 Query: 299 SGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREV-Q 357 + + RE M + E + G R Y +N IGG+RRD+ + + + R EV Sbjct: 127 TVLHLSWLARERVMDILEAIGGNRVNYAMNTIGGVRRDIEEKHKRMILDMIKHYREEVMP 186 Query: 358 ELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPM 417 ++ ++ L P +E R G + IA ++S GP R SG +D R + Y L + Sbjct: 187 KVEEIFLYDPTVEARLRDAGVIPKRIALEYSAQGPTARGSGIKKDVRYNERLGVYPELGI 246 Query: 418 EVHSEQG------CDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFT-------Y 464 + + + DV R+ VR+ E++ ++ +I+ D +P G + Sbjct: 247 KPITPKEFTGVIKGDVFDRMVVRVGELWQSMEIIEKAFDQMPEGKIKTFSKDNVTLTKLK 306 Query: 465 IPHRFALGFAEAPRGDDIHWSMTG-DNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPL 523 +G EAPRG+ IH+ +W+ R T+ N + L G ++D P+ Sbjct: 307 KAEGAGIGRYEAPRGETIHYVRANPGTDTPAKWKAREPTFPNLFAVARALVGEQLADVPV 366 Query: 524 IIGSLDPCYSCTDRMTVVDVRKKKSKVVPYKELERYSIERKN 565 I S+DPC SCTDR+ ++D K +V+ K+L + SIE+ Sbjct: 367 AIASIDPCLSCTDRVAIIDSETGKKRVLTEKDLLKASIEKTK 408 >UniRef50_B6YU98 Membrane bound hydrogenase, NiFe-hydrogenase large subunit 2 n=5 Tax=Euryarchaeota RepID=B6YU98_THEON Length = 426 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 137/403 (33%), Positives = 215/403 (53%), Gaps = 19/403 (4%) Query: 179 NNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSD 238 +P GP+H +EP F L +DGE I++ D +L Y RG++ +A R Y ++ +L++ Sbjct: 8 WIKIPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGLQWIA-YRRNYVQIMYLAE 66 Query: 239 RVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFD 298 R+CGIC F+H+ YT +VE A GI+VPERA+ IRAI+ E+ER+HSHLLNLG+ H G+D Sbjct: 67 RICGICSFSHNHTYTRAVEEAAGIEVPERAEYIRAIIGELERVHSHLLNLGVLGHDIGYD 126 Query: 299 SGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQE 358 + + RE M + E ++G R Y + IGG+RRD+ + + + R + + Sbjct: 127 TVLHLTWLARERVMDVLEAISGNRVNYSMVTIGGVRRDIDEKGKRLILDMIKYYRSIMPQ 186 Query: 359 LVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPME 418 + +V L P +E R + +A + VGP RASG D R Y L ++ Sbjct: 187 IEEVFLHDPTIEARLRDCAVISKRVALEQGAVGPTARASGLKVDARWSERLGVYPDLGVK 246 Query: 419 VHS-------EQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLM--------VEGFT 463 + DV R VRI E+Y +L+M+++ LD +P G + V Sbjct: 247 PVMPQDVTGEKPHGDVFDRAAVRIGEIYQSLDMLEHALDQMPEGKIKTFPKDNILVAKLK 306 Query: 464 YIPHRFALGFAEAPRGDDIHWSMT-GDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAP 522 + +G EAPRG+ +H+ + K RW+ R T+ N + + G+ V+D Sbjct: 307 IMVDGEGIGRYEAPRGELVHYVRGKKGSDKPLRWKPREPTFPNLFAVAKGVTGDQVADFV 366 Query: 523 LIIGSLDPCYSCTDRMTVVDVRKKKSKVVPYKELERYSIERKN 565 L + S+DPC SCTDR+ VV + K +++ +L R SI++ Sbjct: 367 LAVASIDPCLSCTDRVAVV--QDGKKRILTETDLLRLSIKKTR 407 >UniRef50_B3VS74 NADH-ubiquinone oxidoreductase chain 49kDa n=4 Tax=Bacteria RepID=B3VS74_DESVM Length = 358 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 127/361 (35%), Positives = 195/361 (54%), Gaps = 3/361 (0%) Query: 177 KKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFL 236 ++P GP H EP H +L V+ E I++A L YVHRG+E LA R YN++ ++ Sbjct: 1 MSRTIIPFGPQHPVLPEPLHLKLVVEDETIVEAIPALGYVHRGLETLASIR-DYNQMVYI 59 Query: 237 SDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTG 296 +RVCGIC H+ Y +E M ++VP RA+ +R I E+ R+HSHLL LGL G Sbjct: 60 VERVCGICSCIHAMCYCQGLETMMNVEVPSRAKYLRVIWSELHRIHSHLLWLGLFADGFG 119 Query: 297 FDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREV 356 F+S FMQF+++RE M + E G R +N++GG+RRDL K ++ +E+ Sbjct: 120 FESLFMQFWKIRERVMDINEATAGNRVVISVNVVGGVRRDLDKTQQRWILDELDKLEKEL 179 Query: 357 QELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLP 416 ++L+ +L +++RTVG+G L E A VGP +R SG A+D R + + L Sbjct: 180 RQLMKTMLDDYTVKKRTVGVGVLTAEQAIQLGAVGPTLRGSGVAQDARQL-GYAAFDELD 238 Query: 417 MEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEA 476 E + D +R KVR E +++++ + LP L P + E Sbjct: 239 FEPVTSPEGDSWARSKVRFMETLQSMDIVRQAISRLPDSEL-AAKVPGKPTGEVVCRVEQ 297 Query: 477 PRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 PRG+ +++ ++ + R R R T+AN P L ML G ++D P+ ++DPC SCT+ Sbjct: 298 PRGELLYYLKGNGSKNMERVRIRTPTFANIPPLLAMLPGAQLADVPIAALTIDPCISCTE 357 Query: 537 R 537 R Sbjct: 358 R 358 >UniRef50_B8J7E4 NADH-ubiquinone oxidoreductase chain 49kDa n=14 Tax=Bacteria RepID=B8J7E4_ANAD2 Length = 521 Score = 375 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 130/499 (26%), Positives = 211/499 (42%), Gaps = 16/499 (3%) Query: 38 KVNYLPEVVEFLYYKQGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDAN 97 + E+V + GG L+ LFG G V VL+ + + + + V Sbjct: 38 EPARFNEIVLAAHR-GGGRLAALFG--RPDAGGGVLVTAVLADDPEGRLAL-LATRVADA 93 Query: 98 KPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQ 157 +PS+ +PAA ERE+ + +GL P G P + L P R+ + D Sbjct: 94 ---FPSIAAELPAAQAFERELAEQWGLRPEGHPWLKPL--------RFEPPRRAAPDPFG 142 Query: 158 RPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVH 217 R P + ++ + V +GP+H EPGHFR GE + + L Y H Sbjct: 143 RQDPRATIPGEYPFFRVEGEEVHEVAVGPVHAGIIEPGHFRFQCHGERVFHLEIVLGYQH 202 Query: 218 RGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLE 277 RG+E+L L++ + G H AY +VE+ G+ RA +R I LE Sbjct: 203 RGVERLLRGGPDRRS-MALAESIAGDTAVGHGLAYAKAVESLAGVAPTARAMSLRGIGLE 261 Query: 278 VERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDL 337 +ER+ +H+ +LG GF +R + + G R L GG++ DL Sbjct: 262 LERIANHVGDLGALAGDVGFLPTASYCGALRAEFLNAVAEICGNRFGRSLVCPGGVKHDL 321 Query: 338 LKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRAS 397 + + + + ++ +P++ R G G + +A+ VGP RAS Sbjct: 322 DAEAARALAARVRAAWEKTRRAASLMFESPSVRARFEGTGTVPTALAQALGMVGPAARAS 381 Query: 398 GHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPL 457 G RD R DH F Y + V + + DV++R +R+ E ++ + L+ LPGGP Sbjct: 382 GVDRDVRRDHAFGIYRFSHVAVTTAENGDVLARALIRLLEAERSVEFVLDQLERLPGGPS 441 Query: 458 MVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNT 517 P + E RG+ H ++T +L ++ + ++ NW L LR Sbjct: 442 RTAPGPLAPGALVVSMVEGWRGEIAHVAVTDAQGRLEAYKVKDPSFHNWFGLAMALRDGQ 501 Query: 518 VSDAPLIIGSLDPCYSCTD 536 +SD PL S + Y+ D Sbjct: 502 ISDFPLCNKSFNLSYAGHD 520 >UniRef50_C1XJB2 NADH dehydrogenase subunit D n=1 Tax=Meiothermus ruber DSM 1279 RepID=C1XJB2_MEIRU Length = 415 Score = 374 bits (961), Expect = e-102, Method: Composition-based stats. Identities = 104/395 (26%), Positives = 173/395 (43%), Gaps = 31/395 (7%) Query: 173 ELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNE 232 + + +GP H ++ + + GE I+ + Y+H G EK E R Y + Sbjct: 22 PELKSEVMTLNVGPQHPSTHGVLRVVVDLSGEQILRLTPHIGYLHTGFEKNMEHRT-YTQ 80 Query: 233 VTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLAC 292 + R+ + F+H AY SVE +G QVP RAQ IR +L E+ R+ SHL+ LG Sbjct: 81 CITYTPRMDYLHSFSHDLAYALSVEKLVGAQVPPRAQAIRVMLNELSRIASHLVFLGTGL 140 Query: 293 HFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQM 352 G + F FR RE + + E ++G R + IGG++ DL + + + ++ QM Sbjct: 141 LDFGALTPFFYAFREREAVLDLFEWVSGQRFHHNYIRIGGLKEDLPPEFLGEVKKFIAQM 200 Query: 353 RREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGY 412 + E + +P +R G+ + PE+A + S G +RASG D R +P+ GY Sbjct: 201 PARIDEYEALFRESPIFYERARGVAVIPPEVAINLSLTGGSLRASGVNYDVRKAYPYAGY 260 Query: 413 GLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLP---GGPLMVEGFTY----- 464 +V G DV R+ +RI E+ ++ +I ++ L GP+ Sbjct: 261 ETYDFDVPVLTGGDVFDRMVIRILEMRESVKIIRQAVERLEALGPGPIRDPNPQISLPPR 320 Query: 465 ----------------------IPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAAT 502 E+ RG+ ++ ++ YR + RA + Sbjct: 321 HLLETSMEAVIYHFKLVTEGFHPALGEVYVPTESARGELGYYIVSDGGSMPYRVKVRAPS 380 Query: 503 YANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + N +L Y +G ++D ++I SLDP DR Sbjct: 381 FVNLQSLPYACKGVQMADMVVVIASLDPVMGDVDR 415 >UniRef50_Q7NI12 NAD(P)H-quinone oxidoreductase subunit H 1 n=3 Tax=cellular organisms RepID=NDHH1_GLOVI Length = 393 Score = 374 bits (961), Expect = e-102, Method: Composition-based stats. Identities = 109/390 (27%), Positives = 171/390 (43%), Gaps = 27/390 (6%) Query: 174 LGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEV 233 + V+ +GP H + + +DGEN++D L Y+HR MEK+AE+R + Sbjct: 5 ETRAERMVINLGPHHPSMHGVLRLIVTLDGENVVDCVPVLGYLHRSMEKIAESRTIIQYL 64 Query: 234 TFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACH 293 +++ R + + E G+QVP RA+ IR I+LE+ R+ SHLL LG Sbjct: 65 PYVT-RWDYLATMFTEAITVNAPEQLAGVQVPRRARYIRVIMLELSRIASHLLWLGPFMA 123 Query: 294 FTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMR 353 G S F FR RE + E TG R + +GG+ DL + + R + Sbjct: 124 DIGATSPFFYIFREREMIYDLFEAATGMRMMHNYFRVGGVAVDLPYGWVDKARDFCNYLP 183 Query: 354 REVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYG 413 ++ E ++ + P R G+G + E A ++ GPM+RASG D R + Y Sbjct: 184 PKIDEYERLITNNPIFRGRVEGLGYIGREDAINWGLSGPMLRASGVNWDLRKVDHYEIYD 243 Query: 414 LLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPL---------------- 457 L V + G D ++R VRI E+ ++ MI LD LPGGP Sbjct: 244 ELDWNVAWDTGGDTLARYVVRIQEMRESVKMIRQALDQLPGGPYENLEAQRLSGGPKSEW 303 Query: 458 ----------MVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWP 507 +P EAP+G+ + + D+ +RW+ R + N Sbjct: 304 NGFDYQFIGKKSSPTFKMPRGEHYVRVEAPKGELGVYLIGDDSTFPWRWKIRPPGFINLA 363 Query: 508 TLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 L +++G ++D I+GS+D DR Sbjct: 364 VLPKLVQGTKLADLMAILGSVDIIMGEVDR 393 >UniRef50_B3DZF5 Formate hydrogenlyase subunit 5 n=8 Tax=Bacteria RepID=B3DZF5_METI4 Length = 535 Score = 374 bits (960), Expect = e-102, Method: Composition-based stats. Identities = 128/462 (27%), Positives = 219/462 (47%), Gaps = 14/462 (3%) Query: 75 YYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERR 134 Y+ +++G ++V ++PSV P+A ER + D++GL G D R Sbjct: 87 VYLALLDRGGSKISLFGLQVPEG--KFPSVAVAYPSAARLERALYDLFGLQAQGSLDSRP 144 Query: 135 LVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEP 194 + W +P+ D ++ + + VP+GP+H EP Sbjct: 145 WLDHGKWGVR-FPMGDSYPDGEEKLYSFFP---------ARGESLHQVPVGPVHAGIIEP 194 Query: 195 GHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTT 254 GHFR + GE ++ + RL Y H+G+E L ++ ++ R+ G A++ Y Sbjct: 195 GHFRFTMSGEIVVRMEERLGYTHKGIESLFSG-ASIDKGMEIAGRISGDSTVAYAYGYAL 253 Query: 255 SVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKM 314 +VE A+GI P RA+ IRA++ E+ER+ +H ++G C+ F + +RE ++ Sbjct: 254 AVEEALGISPPPRAEWIRALMAELERMANHFGDVGAICNDAAFPRILSRCALLREKILRC 313 Query: 315 AEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTV 374 A+ G R ++GG++ DL + + + R+L + ++ EV L D S +++ RTV Sbjct: 314 AQSCFGHRLMRDKIVVGGVKEDLNAEGLSRIRELLETIKEEVVCLKDFYDSKNSLQDRTV 373 Query: 375 GIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVR 434 G G LD +A F G + RASG D+R + Y L EV + DV +R+ +R Sbjct: 374 GTGVLDRRLAELFGAGGFIGRASGRNFDSRKAFAYKPYDSLSFEVPVLEDGDVNARVWIR 433 Query: 435 INEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLY 494 I E+ ++ +++ L+ +P G + E L E+ RGD + W N K+ Sbjct: 434 ILEIEQSVKLLEQILEGMPPGSICAERIGGEGSGKGLSVVESFRGDILTWIEI-YNGKII 492 Query: 495 RWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 R R ++ WP L ++ G ++D PL S + YS D Sbjct: 493 RCHPRDPSWFQWPLLEKVIVGGVIADFPLCNKSFNCSYSGHD 534 >UniRef50_B5Y915 EchE n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y915_COPPD Length = 360 Score = 373 bits (958), Expect = e-102, Method: Composition-based stats. Identities = 129/359 (35%), Positives = 192/359 (53%), Gaps = 2/359 (0%) Query: 180 NVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDR 239 P+GP H +E + L ++GE ++DA+ ++ ++HR +EK A R + L +R Sbjct: 3 YKFPLGPYHPAFEEGEYIELQLEGEMVVDAEIKIGFIHRAIEKSATKRTFIRD-LGLVER 61 Query: 240 VCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDS 299 CGIC F HS AY +VE A G++VPERA+ IR + E+ER+HSHL+ LG H GFD+ Sbjct: 62 TCGICSFHHSWAYCLAVEKAAGLEVPERAEYIRVLTAELERIHSHLMYLGAMAHKMGFDT 121 Query: 300 GFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQEL 359 FM + RE M M E+L+G R Y +N +GG+RRD+ + Q + + + +L Sbjct: 122 LFMFTWSGREAVMDMLELLSGNRVNYAINTLGGVRRDVDESISSQIKAALETLEDLGLKL 181 Query: 360 VDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEV 419 D ++ RT +G + + A VGP R SG D R P+ Y LL ++ Sbjct: 182 KDTWSKDASILARTKNVGIVSRKEAHLLGVVGPTARGSGIREDLRKTAPYAVYPLLDFDL 241 Query: 420 HSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFT-YIPHRFALGFAEAPR 478 DV SR VR+ EV ++ +I LD +P G + I +G EAPR Sbjct: 242 VVLDDGDVWSRTFVRVLEVLESIKIIRQVLDKMPAGQIKNPKPVLKIEPNDVIGRVEAPR 301 Query: 479 GDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 G+ + +T K R + R T N P +M+RG+ ++DAP+I+G +DPC SC DR Sbjct: 302 GELAYHLITDGTDKPGRLKIRTPTLINLPASEHMMRGSNLADAPVIVGHIDPCMSCMDR 360 >UniRef50_B9L625 NADH-ubiquinone oxidoreductase n=3 Tax=Epsilonproteobacteria RepID=B9L625_NAUPA Length = 549 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 130/553 (23%), Positives = 221/553 (39%), Gaps = 30/553 (5%) Query: 11 LAALNEAFPGVVLDHAWQTKDQLTVTVK---VNYLPEVVEFLYYKQGGWLSVLFGNDERK 67 + + +++ + V K + L V++ L S + D Sbjct: 1 MENIKNILNKYDMEY-VEDYKSTWVKAKLKNKDDLLNVIKDLKQAGVKTCSTVSPTDFID 59 Query: 68 LNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPV 127 N Y++ + W+ V +E D E S+TP +P+A W E E +G+ Sbjct: 60 ENKIEVNYFLEDLFGKKNVWLKVDIERDLENCEIDSITPLMPSANWHELEAYSTFGVKFK 119 Query: 128 GLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAET----------YEFINELGDK 177 G PD R ++ D+ + +P RKD + + Sbjct: 120 GHPDLRYFLISRDYYGK-FPFRKDFDWKAHEENLIQNINDITEEYFEEYEEHEEKLGHEG 178 Query: 178 KNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLS 237 V+ GP H S P +++ +GENI + + YV R +E LAE + + Sbjct: 179 SRTVLNWGPTHPAS-GPIRLKVYTNGENIEKIEPDIGYVWRALEHLAERKDFIGTIVA-V 236 Query: 238 DRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGF 297 +R+C + Y+ +VE G ++ E A+ +R IL E R+ SHL++LG G Sbjct: 237 ERICFMDNPNPMICYSQAVEEIAGKEITEFAKYMRVILGETGRIASHLISLGGFFGTMGL 296 Query: 298 DSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLK--DDMIQTRQLAQQMRRE 355 + M +RE + + E +GAR GG+R L + ++ Sbjct: 297 HTFMMWCLDIREYFLDVLEDYSGARIATACVEPGGVRYPLNDYKAWFEGINKAIKKFEDT 356 Query: 356 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415 ++ D+ + P M R G G + ++ GP+ RASG D R D P+ Y L Sbjct: 357 KADITDIFMKNPLMNTRAKGNGVFTLDDVAEYYLAGPIARASGAKIDVRIDEPYAAYDKL 416 Query: 416 PMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGG----------PLMVEGFTYI 465 ME + + D RL + E+ A+++I + + G +V+ + Sbjct: 417 EMEYATCENGDARDRLYIIFKELEQAMDLIKQAMAKIEEGIEAGEMDPKKDHLVKMPKRM 476 Query: 466 PHRFALGFAEAPRGD-DIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLI 524 P A+ E RG+ +H + YR + +A + + L +LRG T+SD PL+ Sbjct: 477 PAGEAVSRIEWARGEILMHLVTQEKSTSPYRLKIKAPSVNHTMMLDKLLRGKTLSDIPLL 536 Query: 525 IGSLDPCYSCTDR 537 GS+ C DR Sbjct: 537 YGSMHICQGDLDR 549 >UniRef50_C6NX38 Ni,Fe-hydrogenase III large subunit n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NX38_9GAMM Length = 527 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 133/501 (26%), Positives = 223/501 (44%), Gaps = 11/501 (2%) Query: 36 TVKVNYLPEVVEFLYYKQGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVD 95 + +Y ++ + + +QGG L ++G + + + + + ++ + + Sbjct: 37 RLAADYWQQLGQRIR-QQGGRLLGIWGEHQDTAGANI---HAFFLTESG--YLWCTLPLP 90 Query: 96 ANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDY 155 AN E+PS++ P A ER +RD+ GL P+G PD R + WP ++PL + Sbjct: 91 ANLREFPSLSSVFPTACRQERAIRDLLGLEPLGNPDMRPWLRHAAWPANIHPLAMSDIPE 150 Query: 156 RQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFY 215 E + + +P+GP+H + EPGHFR GE I+ + RL Y Sbjct: 151 DILSCA---GEIDYSYRAPAGQDLHEIPVGPVHAGTIEPGHFRFTCLGEQIVQLEERLGY 207 Query: 216 VHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAIL 275 H+G+E+L + + L+ RV G A++ +Y +VE+ I++ +RA +R + Sbjct: 208 CHKGIERLFVGQPP-DAALRLAGRVSGDSSVAYAWSYAMAVESVAEIELSQRALALRGLC 266 Query: 276 LEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRR 335 LE ERL +HL +LG + G Q ++E ++ + G R + +GG+ Sbjct: 267 LERERLANHLGDLGALGNDAGLAFALTQLLAIKEELLRENAEIFGHRYLMDVVQLGGVAV 326 Query: 336 DLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVR 395 DL + Q ++ RR ++ L +L + R V G + E A + G R Sbjct: 327 DLDGRALQHIEQSSKAWRRRLETLDLLLQEHAGLRDRLVATGPITAERAAYWGMAGLSGR 386 Query: 396 ASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGG 455 ASG A D R Y PME+ + DV +R VR EV+ L + + NLPGG Sbjct: 387 ASGQAWDLRTHFAPPPYDRYPMEISLARRGDVAARWAVRFAEVFRCLRWQENVVANLPGG 446 Query: 456 PLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRG 515 V + LG E RG+ ++ + R +++ WP L + Sbjct: 447 SPRVALKAFPKDGEGLGICEGWRGEVFVALRL-EDGHIARCHPHDPSWSLWPVLEEAVCQ 505 Query: 516 NTVSDAPLIIGSLDPCYSCTD 536 + V+D PLI S + YS D Sbjct: 506 DIVADFPLINKSFNLSYSGQD 526 >UniRef50_Q8U0Z6 Mbh12 membrane bound hydrogenase alpha (NADH dehydrogenase) n=3 Tax=Pyrococcus RepID=Q8U0Z6_PYRFU Length = 427 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 131/403 (32%), Positives = 214/403 (53%), Gaps = 19/403 (4%) Query: 179 NNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSD 238 +P GP+H +EP F + +DGE I++ D +L Y RG++ + R Y ++ +L++ Sbjct: 7 WVKIPFGPIHPGLEEPEKFIITLDGERIVNVDVKLGYNLRGVQWIGM-RRNYVQIMYLAE 65 Query: 239 RVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFD 298 R+CGIC F+H+ Y +VE GI+VPERA+ IR I+ E+ER+HSHLLNLG+ H G+D Sbjct: 66 RMCGICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIVGELERIHSHLLNLGVVGHDIGYD 125 Query: 299 SGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQE 358 + + RE M + E ++G R Y + IGG+RRD+ + + + R + + Sbjct: 126 TVLHLTWLARERVMDVLEAVSGNRVNYSMVTIGGVRRDIGEKQKRLILDMIKYYREVLPQ 185 Query: 359 LVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPME 418 + DV L +E R + + ++A + VGP R SG D+R Y L ++ Sbjct: 186 IEDVFLHDSTIEARLRDVAVVPKKLAIEMGAVGPTARGSGIKEDSRWSEQLGVYPDLGIK 245 Query: 419 VHSEQG-------CDVISRLKVRINEVYTALNMIDYGLDNLPGGPLM--------VEGFT 463 + + DV R+ VRI E++ +L+++++ LD +P G + V Sbjct: 246 PVTPEDVTGEKARGDVYDRMAVRIGELWMSLDLLEHALDQMPEGKIKTFPKDNILVAKLK 305 Query: 464 YIPHRFALGFAEAPRGDDIHWSMT-GDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAP 522 + +G EAPRG+ +H+ RW+ R T+ N T+ L GN ++D Sbjct: 306 LLGDGEGIGRYEAPRGELVHYVRGQKGRDGPVRWKPREPTFPNLFTIAKALEGNELADLV 365 Query: 523 LIIGSLDPCYSCTDRMTVVDVRKKKSKVVPYKELERYSIERKN 565 + I S+DPC SCTDR+ +V ++ K V+ K+L + SIE+ Sbjct: 366 VAIASIDPCLSCTDRVAIV--KEGKKVVLTEKDLLKLSIEKTK 406 >UniRef50_O75306 NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial n=570 Tax=cellular organisms RepID=NDUS2_HUMAN Length = 463 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 98/428 (22%), Positives = 173/428 (40%), Gaps = 32/428 (7%) Query: 141 WPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKK----NNVVPIGPLHVTSDEPGH 196 W ++ ++ T + + + K N + GP H + Sbjct: 37 WQPDVEWAQQFGGAVMYPSKETAHWKPPPWNDVDPPKDTIVKNITLNFGPQHPAAHGVLR 96 Query: 197 FRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSV 256 + + GE + D + +HRG EKL E + Y + DR+ + + AY+ +V Sbjct: 97 LVMELSGEMVRKCDPHIGLLHRGTEKLIEYKT-YLQALPYFDRLDYVSMMCNEQAYSLAV 155 Query: 257 ENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAE 316 E + I+ P RAQ IR + E+ RL +H++ + G + F F RE + E Sbjct: 156 EKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYE 215 Query: 317 ILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGI 376 ++GAR GG+ +DL M Q ++ + EL ++L + RT+ I Sbjct: 216 RVSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDI 275 Query: 377 GRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRIN 436 G + E A ++ G M+R SG D R P+ Y + +V D R R+ Sbjct: 276 GVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVE 335 Query: 437 EVYTALNMIDYGLDNLPGGPLMVEGFT---------------------------YIPHRF 469 E+ +L +I L+ +P G + V+ +P Sbjct: 336 EMRQSLRIIAQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGA 395 Query: 470 ALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLD 529 EAP+G+ + ++ + + YR + +A +A+ L M +G+ ++D IIG+ D Sbjct: 396 TYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQD 455 Query: 530 PCYSCTDR 537 + DR Sbjct: 456 IVFGEVDR 463 >UniRef50_A5UXK3 NADH-quinone oxidoreductase subunit D 1 n=20 Tax=cellular organisms RepID=NUOD1_ROSS1 Length = 374 Score = 372 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 102/375 (27%), Positives = 178/375 (47%), Gaps = 12/375 (3%) Query: 174 LGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEV 233 + + + IGP H ++ + VDGE I+D Y+HR E+LAE Y + Sbjct: 1 MLQTQELQINIGPQHPSTHGVFRMIVTVDGETIVDLKPVFGYLHRNHEQLAE-VSTYIQS 59 Query: 234 TFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACH 293 +DR+ A++ A +VE GI VP+RA+ IR +++E+ R+ +H +G + Sbjct: 60 MPYTDRLDYFNSMANNHALALAVEKLAGISVPQRAEYIRVLMVELTRILNHASAVGFLLN 119 Query: 294 FTG-FDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQM 352 G + + M R RE + + E+ +GAR GG+ RDL + + Q ++L Q + Sbjct: 120 DMGAWQTPLMFGMREREKILDLFEMASGARMMCNYFRFGGVWRDLPPEFIPQLKELMQGL 179 Query: 353 RREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGY 412 E +L + RT+ +G L E+A +S GP++RASG D R P+ Y Sbjct: 180 PSFFDEFERLLKENEILLSRTINVGVLPKEVAVSYSVTGPVLRASGIPYDVRRAEPYSVY 239 Query: 413 GLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGG----------PLMVEGF 462 L ++ DV R +RI E+ + ++ ++ LP + + Sbjct: 240 DELDFDIPIGSVGDVYDRFLIRIEEMRQSYRILQQVIERLPDTTGGHINPAMANIGKQKA 299 Query: 463 TYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAP 522 P A E+P+G+ + ++ +++ YR++ RA ++ N L M RG+ V+D Sbjct: 300 LRPPPGDAYARIESPKGELGFYLVSDGSERPYRYKVRAPSFINLTPLGDMCRGHKVADVV 359 Query: 523 LIIGSLDPCYSCTDR 537 +I+GS+D D+ Sbjct: 360 VILGSIDIVMGEVDK 374 >UniRef50_C0QBF7 HyfG n=3 Tax=Bacteria RepID=C0QBF7_DESAH Length = 503 Score = 372 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 113/448 (25%), Positives = 188/448 (41%), Gaps = 17/448 (3%) Query: 90 VRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLR 149 V V P + S+TP P ERE+ + + ++P G P + + Sbjct: 71 VEVVAADTDPAFQSLTPDCPQVQAFEREIYEQWNVLPQGHPWLKSVRSH----------- 119 Query: 150 KDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDA 209 + ++ + V +GP+H EPGHFR GE + Sbjct: 120 ----PPVVAAHGKAAHAGTTDFFSIDGEEAHEVAVGPVHAGIIEPGHFRFQCHGETVYHL 175 Query: 210 DYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQ 269 + L Y HRG+E + + + G H TA +E GI VP R Q Sbjct: 176 EISLGYQHRGVEPALKDGPDKR-TLHYFETLAGDTSIGHGTAGCCMIEALAGIDVPPRGQ 234 Query: 270 MIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNL 329 IRAI E+ER+ +H+ +LG GF R+R ++ + ++ G R GL + Sbjct: 235 AIRAIAAELERIANHIGDLGAISGDVGFLPTMSYCGRIRGDALNLTAMICGNRFGRGLVI 294 Query: 330 IGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSN 389 GG D+ + + ++ + ++++L+TP++ R G++ + AR+ Sbjct: 295 PGGTAWDITHAQTGELLRRLDEIHADAHSAIELMLNTPSVLARLENTGQVPTQTAREIGL 354 Query: 390 VGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGL 449 VG RASG +D R HP+ Y L P+ V + + D ++R ++R E+ + I L Sbjct: 355 VGLAARASGLKQDVRTSHPYENYRLTPLPVITRKTGDCLARAQIRWGEIQASFKFIRTLL 414 Query: 450 DNLPGGPL-MVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPT 508 +LPGG + + P + A E RG+ H + T K ++ ++ NW Sbjct: 415 ADLPGGEVANLWEGKLPPQKMATILVEGWRGEICHTAATDSAGKFSFYKIVDPSFHNWFG 474 Query: 509 LRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 + LR +SD PL S + Y D Sbjct: 475 VSLALRNQQISDFPLCNKSFNLSYCGHD 502 >UniRef50_B1W516 NADH-quinone oxidoreductase subunit D 1 n=24 Tax=Actinomycetales RepID=NUOD1_STRGG Length = 440 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 102/419 (24%), Positives = 176/419 (42%), Gaps = 46/419 (10%) Query: 164 DAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKL 223 D + D + +V +GP H ++ L +DGE + +A + Y+H G+EK Sbjct: 23 DWDEVVESAVKSDDERIIVNMGPQHPSTHGVLRLILEIDGETVTEARCGIGYLHTGIEKN 82 Query: 224 AETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQ--VPERAQMIRAILLEVERL 281 E R TF++ R+ + F + TAY VE +GI+ +P+RA ++R +L+E+ RL Sbjct: 83 LEFRNWTQGTTFVT-RMDYLTPFFNETAYCLGVEKLLGIEDQIPDRATVLRVLLMELNRL 141 Query: 282 HSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDD 341 SHL+ + G + + FR RE + + E+ TG R + GG+ +DL Sbjct: 142 SSHLVCIATGGMELGATTIMIYGFRDRELVLDLFELFTGLRMNHAFVRPGGLAQDLPPGA 201 Query: 342 MIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHAR 401 + + R+ + M++ + E + P + R +G LD GP++R++G Sbjct: 202 VDRLREFIKTMKKNLPEYDKLATGNPIFKARMQDVGYLDLTGCMALGATGPVLRSAGLPH 261 Query: 402 DTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEG 461 D R P+ GY EV + CD R +R+ E+ +L +I+ +D L GP+MV Sbjct: 262 DLRKSDPYCGYETYDFEVPTADTCDSYGRFLIRLEEMRQSLRIIEQCIDRLEPGPVMVAD 321 Query: 462 FT-------------------------------------------YIPHRFALGFAEAPR 478 +P E+P+ Sbjct: 322 KKIAWPAQLALGPDGLGNSLDHIRNIMGTSMEALIHHFKLVTEGFRVPPGQVYTAVESPK 381 Query: 479 GDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 G+ ++ + YR R ++ N + M G V+D + + S+DP DR Sbjct: 382 GELGVHVVSDGGTRPYRVHFRDPSFTNLQAMAAMCEGGQVADVIVAVASIDPVMGGVDR 440 >UniRef50_D0L1P0 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=2 Tax=Gammaproteobacteria RepID=D0L1P0_HALNC Length = 518 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 134/509 (26%), Positives = 220/509 (43%), Gaps = 17/509 (3%) Query: 36 TVKVNYLPEVVEFLYYKQGGWLSVL----FGNDERKLNGHYAVYYVLSMEKGTKCWITVR 91 T++ + L E + L G S R G ++V Y++S I Sbjct: 20 TLRPDKLLEAAQSLLDDLGDTPSAHGRIQCAYALRDAEGKFSVRYIISQGANQPWGIW-- 77 Query: 92 VEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKD 151 VDA+ PS+ +P W ERE++D+YG+ P+ L+L + + PL+ Sbjct: 78 -SVDASSGTLPSLANVLPLLGWYEREIQDLYGITFTDHPEPYPLILHEGFIPAKPPLQTG 136 Query: 152 SMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADY 211 + + + +P GP+ E F GE I+ Sbjct: 137 FDPKAEPIRGQAEPFA---EANMVGDDIQRLPFGPIRADVVESAQFVFHYIGEGILHYHP 193 Query: 212 RLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMI 271 RLFY HR ME E + + L++RV G+ AH A++ ++E A+G Q P RAQ Sbjct: 194 RLFYKHRAMEARFEG-VPISAACVLAERVSGVDSVAHVLAFSQAMEAALGWQAPLRAQAW 252 Query: 272 RAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIG 331 R +L E+ERL++HL G T + + E ++ LTG+R G+ + G Sbjct: 253 RVVLAELERLYNHLQFFGHLAKTTTLKVAEAEGIWLEEQVKQINGRLTGSRFLRGVIVPG 312 Query: 332 GIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVG 391 G+RRDL ++ ++++ +D L +T + R + G L ++A D G Sbjct: 313 GLRRDLDAT---ALIADLNALQPQIEDYLDTLANTRSYLDRLLTTGVLPRQVAFDQGATG 369 Query: 392 PMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDN 451 P+ RAS RD R DH + Y L V + D +R +VR E+ +L++I L+ Sbjct: 370 PIERASDLDRDLRRDHGYALYPELQFAVPTATEGDADARARVRDQEIRQSLHLIRQALNK 429 Query: 452 LPGGPLMVEGFTYIP--HRFALGFAEAPRGDDIHWSMTG-DNQKLYRWRCRAATYANWPT 508 L GP+ T P LG+AEA RG I+ ++L R + + +++NW Sbjct: 430 LEPGPICRTESTIDPPMEGMGLGWAEAVRGGLIYAVHWDAKTERLTRVKIKEPSFSNWRV 489 Query: 509 LRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + + + + D + S + DR Sbjct: 490 FPFTVNDSNMMDYAINEASFGLSVAGADR 518 >UniRef50_B6AS24 Putative NADH-ubiquinone oxidoreductase, 49 kDa subunit n=2 Tax=Leptospirillum sp. Group II RepID=B6AS24_9BACT Length = 499 Score = 371 bits (952), Expect = e-101, Method: Composition-based stats. Identities = 146/484 (30%), Positives = 215/484 (44%), Gaps = 19/484 (3%) Query: 53 QGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAV 112 +GG L+G D + VY L+ G +R V +PS+T P A Sbjct: 34 RGGRFVSLWGTDHPEG----FVYAALAGPDG---LFVLRSPVSKESGTFPSLTALFPLAS 86 Query: 113 WGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFIN 172 ER VRD+YG IP GL D R + DD + R P D Sbjct: 87 RPERAVRDVYGWIPEGLSDTRPWIRQDDHGGHGSGKERSPEGGRDYPFVRVD-------- 138 Query: 173 ELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNE 232 + + +P+GP+H EPGHFR V GE ++ + RL Y H+G+ L R + Sbjct: 139 ---GEGVHEIPVGPVHAGIIEPGHFRFQVVGEKVLRMEERLGYTHKGIRGLLAHR-PVGD 194 Query: 233 VTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLAC 292 VT LS R+ G A A+ +VE A PERA +RAILLE ER+ +HL +LG Sbjct: 195 VTRLSSRISGDSAVAFQWAWAQAVECATQTSPPERAVWLRAILLERERIANHLGDLGALG 254 Query: 293 HFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQM 352 + GF G +QF R++E ++ + G R GG+ D + + R ++ Sbjct: 255 NDAGFAFGLVQFGRLKEDLLRTNGQIFGHRYLMDTICPGGVAVDPGDGALSRLRSELPRL 314 Query: 353 RREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGY 412 + E+ L + ++ R G G LDP +A + G + RASG D R DHP Y Sbjct: 315 QEEIHVLKTIYDEHGGLQDRFAGTGVLDPLLAGAWGLGGVVGRASGQLLDLRHDHPVRPY 374 Query: 413 GLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALG 472 + + V + DV +R++VR E+ +L ++ L + P GP P G Sbjct: 375 DIERVPVALAKRGDVGARVQVRFQEIRHSLAFLESVLASFPPGPARRGLVCRSPKAEGFG 434 Query: 473 FAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCY 532 + E RG+ + W + + ++ WP L + GN V+D PLI S + Y Sbjct: 435 WIEGFRGEVLAWVRLDRDGNVEDAHFHDPSWLLWPALERAVPGNLVADFPLINKSFNLSY 494 Query: 533 SCTD 536 S D Sbjct: 495 SGHD 498 >UniRef50_Q2FTW4 Membrane bound hydrogenase subunit mbhL n=3 Tax=Euryarchaeota RepID=Q2FTW4_METHJ Length = 409 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 134/409 (32%), Positives = 213/409 (52%), Gaps = 16/409 (3%) Query: 173 ELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNE 232 K +PIGP+H EP +F ++GE I D+ HRG+E + R + Sbjct: 1 MSQKKAPYELPIGPIHPALKEPINFTFQMNGEVIEKVDFAPGRAHRGIEWMGMRRNPV-Q 59 Query: 233 VTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLAC 292 + L DR+CGICG H+ + +VE I+VP+RA +R I+ E ER+ SH+L G+A Sbjct: 60 ILHLCDRICGICGVHHALVFAQAVEQIADIEVPDRAYYVRTIIAEFERIQSHILWAGVAA 119 Query: 293 HFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQM 352 H GFD+ F +++RE S+ + E +TG R YG+ ++GG RRD+ D + Q Q Sbjct: 120 HELGFDTLFYLAWQIREESVDVIEYITGNRVNYGIMMLGGTRRDITADMFPRLEQALQYY 179 Query: 353 RREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGY 412 ++++V++ L+ + R G L A + + VGP RASG A D R D P+ Y Sbjct: 180 EGLLEKMVNLFLNDKTIAMRCKDTGILTKRRALELATVGPTSRASGLAMDVRIDSPYAAY 239 Query: 413 GLLPMEVHS------EQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFT--- 463 G L ++ E DV R+ VRI E+ ++++I + +P GP++ E Sbjct: 240 GDLDFDIVLPDVYNSEGNGDVYDRIIVRIFEIKQSIDIIRQCMKQMPEGPVLAEEKYAKL 299 Query: 464 ----YIPHRFALGFAEAPRGDDIHWSMTGDNQK-LYRWRCRAATYANWPTLRYMLRGNTV 518 A EAPRG+D+H+ Q+ W+ +A+TY+N +L+G + Sbjct: 300 LMNLKKASGEAFARVEAPRGEDMHYVRMNGKQEAPEMWKVKASTYSNQMAWVEILQGEQI 359 Query: 519 SDAPLIIGSLDPCYSCTDRMTVVDVRKKKSKVVPYKELERYSIERKNSP 567 +D P+I+ S+DPC SCTDR+ VV + + ++ + L R S+E+ Sbjct: 360 ADIPIIVASIDPCMSCTDRVAVVG-QDGNAGIMTKEHLHRLSVEKTRRL 407 >UniRef50_B5IS38 Respiratory-chain NADH dehydrogenase, 49 Kd subunit domain protein n=1 Tax=Thermococcus barophilus MP RepID=B5IS38_9EURY Length = 409 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 129/407 (31%), Positives = 214/407 (52%), Gaps = 16/407 (3%) Query: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235 K +PIGP+H EP V+GE I+ D + + HRG+E + R + + Sbjct: 2 PKTAYYIPIGPIHPALKEPIRVEAEVEGEKIVRVDVKRGFAHRGIEYMGMKRNAI-QTLY 60 Query: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 295 LS+R+CGIC +H A+ + E A+GI+ P RAQ IR I+ E+ER+HSH+L LG+ H Sbjct: 61 LSERICGICSISHPYAFVVTAEKALGIEAPPRAQYIRPIIAELERIHSHILWLGVIAHEM 120 Query: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 355 GFDS ++ RE + + E+LTG R Y + +IGG+RRDL + + + + Sbjct: 121 GFDSLLFWTWKGREKVLDLLELLTGNRINYSVYMIGGVRRDLKESHIKAIKDAITYYWKF 180 Query: 356 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415 +++ +++LS P + RT G+ +L E+A + VGP+ RA+G D R D P+ Y + Sbjct: 181 TEQMKEIILSDPVYKARTRGVAQLSKEMALKLNVVGPVARAAGIRMDIRQDMPYDAYADI 240 Query: 416 PM------EVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEG-------F 462 + ++ E D VRI E+ +L++I+Y +DNLP G ++ Sbjct: 241 DVRAVVPQDIVGEAKGDAYDITMVRIYEIEQSLDIIEYCVDNLPEGKILAIPNYPALLAK 300 Query: 463 TYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAP 522 A+G EAPRG+ +H+ W+ A +Y N + +L G V+D P Sbjct: 301 IRRTKGEAIGAHEAPRGEVVHYLKFDGRDGPSVWKVIAPSYNNINSWAPLLLGAEVADIP 360 Query: 523 LIIGSLDPCYSCTDRMTVVDVRKKKSKVVPYKELERYSIERKNSPLK 569 +++ +DPC C DR+ ++ + + KV+ Y+ + + ++E+ K Sbjct: 361 IVVAYIDPCMCCNDRVALL--KTPEGKVLGYEYIHKKAVEKTRKIEK 405 >UniRef50_A3DKH4 NADH-ubiquinone oxidoreductase, chain 49kDa n=2 Tax=Desulfurococcaceae RepID=A3DKH4_STAMF Length = 406 Score = 368 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 125/389 (32%), Positives = 195/389 (50%), Gaps = 5/389 (1%) Query: 181 VVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 240 +P+GP H EP + + DGE I++ + Y HRG+EKL E Y + F+ RV Sbjct: 14 EIPVGPQHPALHEPVLLKAYADGEEIVNVEINTGYNHRGIEKLGEKNTFYRD-IFIVARV 72 Query: 241 CGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG 300 CGIC H+ Y ++E + + ERA+ +R + +E ER+HSH+L + GFDS Sbjct: 73 CGICNLVHANCYVRALEEILDMHPNERAKYLRVLAMEFERVHSHMLINAVMAEIIGFDSL 132 Query: 301 FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELV 360 FM RE MK EI+TG R +IGG+RRD+ + ++ ++ + Sbjct: 133 FMNIMLDRENIMKAKEIITGNRVLSDYMMIGGVRRDIDSVKKDKLLKIIDKVLPRLHYYK 192 Query: 361 DVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVH 420 + + + +R V +G + ++ VGP RASG D R + YG +P + Sbjct: 193 KLFMEDDTILKRLVDVGVIKRSDVTRYTFVGPPARASGVKIDVRVSEKYEVYGDIPFNMV 252 Query: 421 SEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEG----FTYIPHRFALGFAEA 476 + D +R+ VR +E +LNM Y L++LP V P A EA Sbjct: 253 TRNEGDSWARMIVRWDEAIESLNMAKYILEHLPNDGNPVPDERRLPRRFPPGEAFTRVEA 312 Query: 477 PRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 PRG+ ++ M+ K YR + + ++ N Y+ G+T++D P+I+ SLDPC SC + Sbjct: 313 PRGELTYYVMSDGKPKPYRLKIKTPSFTNIINSGYLYVGHTIADLPVILVSLDPCISCME 372 Query: 537 RMTVVDVRKKKSKVVPYKELERYSIERKN 565 R+TV+D+ + VP KEL +R N Sbjct: 373 RVTVIDLENNTRRKVPIKELAGGGRKRVN 401 >UniRef50_D2R5G7 NADH dehydrogenase (Quinone) n=2 Tax=Planctomycetaceae RepID=D2R5G7_9PLAN Length = 404 Score = 368 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 107/387 (27%), Positives = 180/387 (46%), Gaps = 31/387 (8%) Query: 181 VVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 240 + GP H + L +DGE ++DA + Y+H G EK+ E + +N+ ++DR+ Sbjct: 19 TLNFGPQHPATHTTLRLVLKLDGERVVDAVPDIGYLHSGFEKIGE-HLDFNQYVTVTDRM 77 Query: 241 CGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG 300 I A++ A+ +VE MGI++ R + IR I+ E+ R+ HLL+ G TG + Sbjct: 78 NYISPMANNVAWHGAVEKLMGIEITPRCKYIRTIICELARISDHLLSTGAMGLDTGAFTF 137 Query: 301 FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELV 360 F+ F RE + E L GAR T +GG+ +D+ + + R + + + ++ Sbjct: 138 FLYAFYQRERIYDIFETLCGARFTNSYTRVGGLSQDMTPLVIEKIRDFLRTFPQTIDDME 197 Query: 361 DVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVH 420 ++ R G+G L E A + S GP+ RASG RD R D P++ YG L +V Sbjct: 198 RLVNRNRIFVDRMKGVGLLSKERATNMSATGPVARASGVTRDLRKDEPYLAYGDLDFQVC 257 Query: 421 SEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTY---------------- 464 D +R VR+ E+ +L ++ L+NLP GP+ V Sbjct: 258 CATAGDCFARYYVRMAEMRESLKIVAQALENLPAGPVNVGMDDRAALPSKAEVYQTIEGT 317 Query: 465 --------------IPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLR 510 +P+ EAP G+ + + + YR RCR ++ ++ Sbjct: 318 ITHFELVMLNRGFTVPNEEVYSAIEAPNGELGFYLVGDGSDVAYRARCRPPSFIHFSLFP 377 Query: 511 YMLRGNTVSDAPLIIGSLDPCYSCTDR 537 ++RG+T+SD ++GSL+ + DR Sbjct: 378 ELIRGHTLSDVVAVLGSLNIIAAELDR 404 >UniRef50_P31895 Carbon monoxide-induced hydrogenase n=14 Tax=Bacteria RepID=COOH_RHORU Length = 361 Score = 367 bits (943), Expect = e-100, Method: Composition-based stats. Identities = 131/362 (36%), Positives = 189/362 (52%), Gaps = 2/362 (0%) Query: 177 KKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFL 236 +P+GPLHV +EP +FR+ VDGE ++ D +VHRG+E LA R Y + L Sbjct: 1 MSTYTIPVGPLHVALEEPMYFRIEVDGEKVVSVDITAGHVHRGIEYLATKRNIYQNIV-L 59 Query: 237 SDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTG 296 ++RVC +C +H Y ++E+ G+ VP RAQ +R I E +R+ SH+ N+ + H G Sbjct: 60 TERVCSLCSNSHPQTYCMALESITGMVVPPRAQYLRVIADETKRVASHMFNVAILAHIVG 119 Query: 297 FDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREV 356 FDS FM RE E + G R IGG++ DL KD ++ + Sbjct: 120 FDSLFMHVMEAREIMQDTKEAVFGNRMDIAAMAIGGVKYDLDKDGRDYFIGQLDKLEPTL 179 Query: 357 -QELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415 E++ + + P++ RT GIG L D+ +GP+ R SGHA D R P+ Y L Sbjct: 180 RDEIIPLYQTNPSIVDRTRGIGVLSAADCVDYGLMGPVARGSGHAYDVRKQAPYAVYDRL 239 Query: 416 PMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAE 475 E+ + DV SR VR E T++ +I L ++P GP IP A+ E Sbjct: 240 DFEMALGEHGDVWSRAMVRWQEALTSIGLIRQCLRDMPDGPTKAGPVPPIPAGEAVAKTE 299 Query: 476 APRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCT 535 APRG+ I++ T + R + R TY NW L M+ G +SD PLI+ S+DPC SCT Sbjct: 300 APRGELIYYLKTNGTDRPERLKWRVPTYMNWDALNVMMAGARISDIPLIVNSIDPCISCT 359 Query: 536 DR 537 +R Sbjct: 360 ER 361 >UniRef50_C1D0H4 Putative NADH dehydrogenase (Quinone), subunit D (NADH-quinone oxidoreductase, subunit D) n=1 Tax=Deinococcus deserti VCD115 RepID=C1D0H4_DEIDV Length = 412 Score = 366 bits (940), Expect = 1e-99, Method: Composition-based stats. Identities = 107/389 (27%), Positives = 163/389 (41%), Gaps = 28/389 (7%) Query: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235 + + +GP H ++ + +DGE + + Y+H G EK E R Y + Sbjct: 25 HTEVMSLNVGPQHPSTHGVLRLVVDMDGEYVRKVVPHMGYLHTGFEKTFEHRT-YQQGVT 83 Query: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 295 + R + F H AY SVE M QVP+RA MIR IL E+ R+HSHL+ +G Sbjct: 84 YAPRTDYLHCFGHELAYVLSVEKLMQAQVPDRASMIRVILHELGRIHSHLVFVGTGLLDL 143 Query: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 355 G + F FR +E+ + + E TG R G +GG+ RD+ +D Q QM R Sbjct: 144 GALTPFFYAFREKESCVDLFEEATGYRMNQGFFRVGGLSRDVPEDWPGHVAQFLDQMERG 203 Query: 356 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415 V E ++ + P R G+G + ++A D GP +RASG D R HP+ GY Sbjct: 204 VDEYTNLFANNPIFLDRARGVGVIPTDVALDLGLTGPNLRASGVPLDVRKAHPYCGYEAY 263 Query: 416 PMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTY----------- 464 V S D ++R +R+ E ++ +I L L G + Sbjct: 264 DFNVISSTDGDSLARFTMRLLEFSESIKIIRQALARLKPGLIKDPNRKISLPPRHELETS 323 Query: 465 ----------------IPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPT 508 P E RG+ ++ ++ YR + RA ++ N Sbjct: 324 MEAVIHHFKLVTEGFHPPTGEVYVPVEGARGEVGYYIVSDGGSVPYRVKIRAPSFVNLQA 383 Query: 509 LRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 L Y G +D I+ ++DP DR Sbjct: 384 LEYACVGAQFADLITILATIDPVLGDVDR 412 >UniRef50_P56753 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic n=201 Tax=cellular organisms RepID=NDHH_ARATH Length = 393 Score = 366 bits (939), Expect = 2e-99, Method: Composition-based stats. Identities = 106/394 (26%), Positives = 170/394 (43%), Gaps = 27/394 (6%) Query: 170 FINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMG 229 + K +V +GP H + + +DGE+++D + L Y+HRGMEK+AE R Sbjct: 1 MKRPVTGKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRAI 60 Query: 230 YNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLG 289 + +++ R + E IQVP+RA IR I+LE+ R+ SHLL LG Sbjct: 61 IQYLPYVT-RWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLG 119 Query: 290 LACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLA 349 G + F FR RE + E TG R + IGGI DL + + Sbjct: 120 PFMADIGAQTPFFYIFREREFVYDLFEAATGMRMMHNFFRIGGIAADLPYGWIDKCLDFC 179 Query: 350 QQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPF 409 EV E ++ P +R G+G + E A ++ GPM+RASG D R + Sbjct: 180 DYFLTEVVEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIPWDLRKIDRY 239 Query: 410 VGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGP------------- 456 Y E+ ++ D ++R VR++E+ ++ +I L+ LPGGP Sbjct: 240 ESYDEFEWEIQWQKQGDSLARYLVRLSEMTESIKIIQQALEGLPGGPYENLESRGFDRKR 299 Query: 457 -LMVEGFTY------------IPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATY 503 F Y + + EAP+G+ + + + +RW+ R + Sbjct: 300 NPEWNDFEYRFISKKPSPTFELSKQELYVRVEAPKGELGIFLIGDQSGFPWRWKIRPPGF 359 Query: 504 ANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 N L +++ ++D I+GS+D DR Sbjct: 360 INLQILPELVKRMKLADIMTILGSIDIIMGEVDR 393 >UniRef50_C6A3Z3 Membrane-bound hydrogenase MBH 2, subunit Mbh2L (NiFe hydrogenase catalytic subunit) n=1 Tax=Thermococcus sibiricus MM 739 RepID=C6A3Z3_THESM Length = 412 Score = 365 bits (938), Expect = 2e-99, Method: Composition-based stats. Identities = 131/407 (32%), Positives = 205/407 (50%), Gaps = 17/407 (4%) Query: 177 KKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFL 236 K VPIGP+H EP V+GE I+ D + + HRG+E + R + +L Sbjct: 3 KTTYYVPIGPIHPALKEPIRVEAEVEGEKIVKVDVKRGFAHRGIEYMGMKRNAI-QTLYL 61 Query: 237 SDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTG 296 S+R+CGIC +H A+ E A+GI+ P RAQ IR I+ E+ER+HSH+L LG+ H G Sbjct: 62 SERICGICSISHPYAFVIGSEKALGIEAPPRAQYIRTIIAELERIHSHILWLGVIAHEIG 121 Query: 297 FDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREV 356 FDS ++ RE + + E +TG R Y + +IGG+RRDL + + + + Sbjct: 122 FDSLLFWTWKGREKVLDILEAITGNRINYSMYMIGGVRRDLKESHIRVLKDMITYYWEFT 181 Query: 357 QELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLP 416 + + +V LS P + RT G+ ++ ++A + VGP RA+G D R D P+ Y + Sbjct: 182 EHMKEVFLSDPVYKARTRGVAQVSKDVALKLNLVGPTARAAGLRMDIRQDIPYDAYADID 241 Query: 417 MEVHSEQG------CDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEG-------FT 463 ++ Q D VRI E+ +L++I+Y +DNLP G ++ Sbjct: 242 VKAVVPQDIVGEARGDAYDVTMVRIYEIEQSLDIIEYCIDNLPEGKILAIPNYIALLNKI 301 Query: 464 YIPHRFALGFAEAPRGDDIHWSMTGDN-QKLYRWRCRAATYANWPTLRYMLRGNTVSDAP 522 +G EAPRG+ +H+ W+ A +Y N + Y L G V+D P Sbjct: 302 KKTEGEGIGAHEAPRGEVVHYFRYDGTRDGPAVWKVIAPSYNNINSWGYCLLGAEVADIP 361 Query: 523 LIIGSLDPCYSCTDRMTVVDVRKKKSKVVPYKELERYSIERKNSPLK 569 +++ +DPC C DR+ VV K++ Y L R ++E+ + K Sbjct: 362 VVVAYIDPCMCCNDRVAVVKDSTG--KILDYSILHRKAVEKTRALEK 406 >UniRef50_C8XAS3 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XAS3_NAKMY Length = 506 Score = 365 bits (938), Expect = 2e-99, Method: Composition-based stats. Identities = 151/508 (29%), Positives = 230/508 (45%), Gaps = 18/508 (3%) Query: 35 VTVKVNYLPEVVEFLYYKQGGWLSVLFGNDER-KLNGHYAVYYVLSMEKGTKCWITVRVE 93 V + L + L + ++++ G+D+ + G V YV GT + + + Sbjct: 10 VELSAGELIPTAQSLLGQGY-RIALMAGHDDPAERGGTLRVVYVF-TRAGTDQRVELTLR 67 Query: 94 VDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSM 153 D P PS+ A ERE+RD++G++P G P RLV WP +P+R+D+ Sbjct: 68 CDPADPHLPSLAGLSFPAGRFEREIRDLFGIVPDGHPMPSRLVRHFHWPRGWHPMRRDAG 127 Query: 154 DYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRL 213 P D + + +P+GP+H PGHFR V GE +++ RL Sbjct: 128 PP----PPFGDVDGPYPFRTVEGPGVYEIPVGPVHAGMIGPGHFRFSVVGETVLNLKARL 183 Query: 214 FYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRA 273 ++VHRG+EKL R L++RV G H+ AY +VE+A G+ + AQ IRA Sbjct: 184 WFVHRGLEKLFAGRA-VAAGVELAERVSGDTTVGHALAYVRAVEDASGVTLDPAAQRIRA 242 Query: 274 ILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGI 333 ILLE+ERL++H+ ++G + G R+RE +++ + +TG R G ++GG+ Sbjct: 243 ILLELERLYNHIGDIGALANDVGHGILNNHALRIRERLLRINDAVTGHRLMRGAIVVGGV 302 Query: 334 RRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPM 393 R +L D + + E+VD+ L + R G L A D +G + Sbjct: 303 RVRVLPDAGE-----LAAVAADCAEVVDLALGHSVVRDRFTGTAMLSHRQAVDLGTLGYV 357 Query: 394 VRASGHARDTRADHPFVGYGLLPMEVHSEQ--GCDVISRLKVRINEVYTALNMIDYGLDN 451 RASG A D R DHP G P E S DV SR VR E+ +++ MI Sbjct: 358 ARASGVAVDARFDHPVPGLVYDPAERLSTHPTDGDVASRFLVRAQEIQSSVRMIAALAGQ 417 Query: 452 LPGG-PLMVEGFTYIPHR--FALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPT 508 + P V G T +G E RG +H + +L R R ++ NWP Sbjct: 418 VDTTAPREVGGSTSSAAGVRAGVGIVEGWRGTIVHRVELDADGRLTRVRIVDPSFFNWPA 477 Query: 509 LRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 L + V D PL S + Y+ D Sbjct: 478 LPLAMADTIVPDFPLANKSFNLSYAGND 505 >UniRef50_B8DS05 NADH dehydrogenase (Quinone) n=7 Tax=Deltaproteobacteria RepID=B8DS05_DESVM Length = 406 Score = 365 bits (936), Expect = 4e-99, Method: Composition-based stats. Identities = 99/382 (25%), Positives = 165/382 (43%), Gaps = 5/382 (1%) Query: 160 APTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRG 219 + ++ ++ +GP H ++ L +DGE I+ A+ L Y+HR Sbjct: 26 DQIAGDGYTCRFEQGARPESLILNMGPQHPSTHGVLRVLLELDGEYIVRAEPVLGYLHRM 85 Query: 220 MEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVE 279 EK+AE + + RV + A + AY +VE GI++PERA+ +R I E+ Sbjct: 86 HEKMAEVKTPA-QFMPNMGRVDYLHALAWNWAYVGAVEKLAGIEIPERAEYLRVITCELN 144 Query: 280 RLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLK 339 R+ SHLL G G + M F RE + + +++TG+R TY GG+ D Sbjct: 145 RISSHLLWWGAYLLDLGAFTPIMYAFDDREMLLDLLQLMTGSRLTYSSFRFGGVYTDASP 204 Query: 340 DDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGH 399 + RQ +R + ++ + +R +G + ++ + GP+ R SG Sbjct: 205 AFVQGVRQFIPHLRSRLPMYTALVTENIILRRRIEEVGVIPQDMVTRYGASGPVARGSGI 264 Query: 400 ARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMV 459 A D R P+ Y E+ ++R VR+ E+ +L +++ ++NLP G M Sbjct: 265 AYDVRRAEPYSVYDRFDYEIPVRHEECSMARYMVRMAEIEQSLRIVEQAIENLPDGEHMH 324 Query: 460 EGFTYI----PHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRG 515 P + E RG W + + YR + RA ++N RG Sbjct: 325 PKAPKPSFKLPAGESYFAVEGARGKIGVWIASDGGKTPYRVKLRAPGFSNLALFAECARG 384 Query: 516 NTVSDAPLIIGSLDPCYSCTDR 537 ++DA I+GSLD DR Sbjct: 385 TLLADAVAILGSLDMVIPEIDR 406 >UniRef50_Q2JFL7 NADH-quinone oxidoreductase subunit D n=81 Tax=Bacteria RepID=NUOD_FRASC Length = 482 Score = 365 bits (936), Expect = 4e-99, Method: Composition-based stats. Identities = 103/405 (25%), Positives = 170/405 (41%), Gaps = 46/405 (11%) Query: 178 KNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLS 237 + VV +GP H ++ L ++GE + + + Y+H G+EK E R VTFL+ Sbjct: 79 ERIVVNMGPQHPSTHGVLRLVLEIEGETVTETRLVIGYLHTGIEKSCEYRTWTQAVTFLT 138 Query: 238 DRVCGICGFAHSTAYTTSVENAMGIQ--VPERAQMIRAILLEVERLHSHLLNLGLACHFT 295 R + + AY SVE +GI VPERA +IR +++E++R+ SHL+ L Sbjct: 139 -RADYLSPLFNEAAYCLSVERLLGITEQVPERATVIRVMVMELQRIASHLVWLATGGMEL 197 Query: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 355 G + + FR RE + + E++TG R + GG+ +DL R M + Sbjct: 198 GATTAMIFGFREREKVLDLLELITGLRMNHAYIRPGGLAQDLPDGAERAIRAFLADMPKR 257 Query: 356 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415 ++E +L P + R V + LD GP++RA+G D R P+ GY Sbjct: 258 IREYHALLTGQPVWKARMVDVNVLDAAGCIALGTTGPVLRAAGLPWDLRKTMPYCGYETY 317 Query: 416 PMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFT------------ 463 +V + D +R VR+ E+ +L ++D LD L GP+MV Sbjct: 318 EFDVPTALEGDSFARYLVRLEEMGESLKIVDQCLDRLRPGPVMVADKKIAWPSQLSVGSD 377 Query: 464 -------------------------------YIPHRFALGFAEAPRGDDIHWSMTGDNQK 492 +P E+PRG+ + ++ + Sbjct: 378 GTGNSLAYIRKIMGTSMEALIHHFKLVTEGFRVPAGQVYTQIESPRGELGYHVVSDGGTR 437 Query: 493 LYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 +R R ++ N + + G V+D + + S+DP DR Sbjct: 438 PFRVHVRDPSFVNLQAVPALTEGGQVADVIVGVASVDPVLGGVDR 482 >UniRef50_Q1AVI6 NADH-quinone oxidoreductase subunit D n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=NUOD_RUBXD Length = 396 Score = 364 bits (935), Expect = 5e-99, Method: Composition-based stats. Identities = 107/372 (28%), Positives = 179/372 (48%), Gaps = 4/372 (1%) Query: 169 EFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRM 228 I + + + +GP H L +DGE I+ D + Y+HR EK+AE R Sbjct: 26 PDIRDEFGLETLDMNMGPQHPAMHGLLRLILELDGETIVRCDPVMGYLHRCQEKIAENRT 85 Query: 229 GYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNL 288 Y V L+DR+ + Y +VE+ +G+++P RA+ IR ++ E+ R+ SHL ++ Sbjct: 86 -YPAVIPLTDRLDYFANMHNEHGYCLAVEDLLGVEIPPRAEYIRVLMCELMRIASHLPSI 144 Query: 289 GLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQL 348 G G + + FR RE E +TGAR + IGG++ DL D + + Sbjct: 145 GFLLLELGAFTPILYAFRERERIQNFFEAVTGARMMFHYIRIGGVKADLPPDIPEKIWEY 204 Query: 349 AQQMRREVQ-ELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADH 407 + + + ++ + +D++ +RT GI RL E A + GP +R +G A D R D+ Sbjct: 205 VEGLEKRIKPDFIDLIEGNEIFIERTRGISRLTQEEAIELGLTGPPLRCTGVAFDVRRDY 264 Query: 408 PFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVE--GFTYI 465 P+ Y L EV ++ DV + +VRI EVY ++ +I L+ +P G +M + Sbjct: 265 PYSVYPELDFEVVTDTAGDVEASYRVRIKEVYESIKIIRQCLEKMPEGEVMGDVGRRVRP 324 Query: 466 PHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLII 525 P G E PRG+ ++ + YR R ++ N L+ + G+ + D I+ Sbjct: 325 PEGEGFGRVEGPRGEFAVHVVSDGSDTPYRVHYRDPSFVNMQLLQEKMPGHYLPDIMPIM 384 Query: 526 GSLDPCYSCTDR 537 G +DP D+ Sbjct: 385 GLVDPVSGGWDK 396 >UniRef50_C1TPP0 Ni,Fe-hydrogenase III large subunit n=2 Tax=Synergistaceae RepID=C1TPP0_9BACT Length = 413 Score = 362 bits (930), Expect = 2e-98, Method: Composition-based stats. Identities = 139/406 (34%), Positives = 211/406 (51%), Gaps = 15/406 (3%) Query: 174 LGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEV 233 + + K +PIGP+HV EP L ++GE+I DA R +HRG+E +A R +V Sbjct: 1 MSETKTYKLPIGPVHVGLKEPITAWLDIEGEHIKDAVIRPGAIHRGVEFMARERNPI-QV 59 Query: 234 TFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACH 293 +L++RVCGIC F+H+ A+ +VE+A I+VP RAQ IR+++LE+ER+HSH+L G+AC+ Sbjct: 60 IYLAERVCGICSFSHAIAFVKAVEDAAQIEVPIRAQYIRSMVLELERIHSHILWSGVACY 119 Query: 294 FTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMR 353 GFDS F +RE M + E L+G R Y + +GG+R D+ + + R Sbjct: 120 TIGFDSAFHLGMMLREKVMDVLEALSGNRVNYAVTTVGGVRWDVTPAVVRTVMDMIHYYR 179 Query: 354 REVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYG 413 E + ++ P ++ R +G L E A + +GP R SG D R P+ Y Sbjct: 180 NEFASFYEAAINDPVVKARLRDVGVLTTEQAIKYCALGPTSRGSGVRADVRWSAPYDAYC 239 Query: 414 LLPMEVHS------EQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFT---- 463 + +E E DV R VR+ EV +L++++ ++ LP G + E Sbjct: 240 DIHVEPVVPQDYTGEVHGDVYDRFLVRVYEVLQSLDILEKIMEGLPEGSITFEPKVNKLL 299 Query: 464 ---YIPHRFALGFAEAPRGDDIHWSMTGD-NQKLYRWRCRAATYANWPTLRYMLRGNTVS 519 G EAPRGDD H + + W+ RA TY+N + M + N ++ Sbjct: 300 TVLKKAEGVGYGCIEAPRGDDTHAVGLKAQQENVQWWKVRAPTYSNAVSWPLMFKDNELA 359 Query: 520 DAPLIIGSLDPCYSCTDRMTVVDVRKKKSKVVPYKELERYSIERKN 565 DAPLII S+DPC SC +RM + D VV +L + E+ + Sbjct: 360 DAPLIINSIDPCISCMERMVLSDTSSGTKSVVTKADLLKLCREKTD 405 >UniRef50_Q6APF2 Related to hydrogenase, component E-formate hydrogenlyase subunit 5 n=1 Tax=Desulfotalea psychrophila RepID=Q6APF2_DESPS Length = 509 Score = 362 bits (930), Expect = 2e-98, Method: Composition-based stats. Identities = 113/464 (24%), Positives = 203/464 (43%), Gaps = 16/464 (3%) Query: 76 YVLSMEKGTKCWITVRVEVDANKPEYPSVTP-RVPAAVWGEREVRDMYGLIPVGLPDERR 134 ++L++ + ++ + EV + S+T ERE+ + YG+ P G P + Sbjct: 58 HLLAVVRNRDLYV-IGTEVGK---SFQSLTGAVSEKFHMFEREIAEQYGITPDGHPWLKM 113 Query: 135 LVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEP 194 + ++ D + + + + V +GP+H EP Sbjct: 114 VRYHKNYAGAK--------DVFGNNYGKENIPGNYPFFSVEGESIHEVAVGPVHAGIIEP 165 Query: 195 GHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTT 254 GHFR GE ++ + +L Y HRG+EK+ T + + + + G H + Sbjct: 166 GHFRFQCAGEEVLHLEIQLGYQHRGIEKMLPT-LPQKRFPIICESIAGDTSIGHGLSMCQ 224 Query: 255 SVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKM 314 ++E GI V A++IR LE+ER+ +H+ +LG F+ F R+R + + Sbjct: 225 AIEGLAGISVDRGAKIIRTTALELERICNHIGDLGALAGDAAFNPPAAYFGRIRGEFLNL 284 Query: 315 AEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTV 374 ++L+G R GL GG+ + ++ R+ ++ E++ + D++ S ++ R Sbjct: 285 LQVLSGNRFGKGLVRPGGVTHIMREEQRKLIREKLLEVTGEIENICDLIFSAHTVQARFE 344 Query: 375 GIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVR 434 G + E+A+D VG RASG A D R P Y LP + DV SR VR Sbjct: 345 HTGTVQHEMAKDLGLVGYSGRASGIAYDVRNSFPTECYRELPANENRVTNGDVNSRGMVR 404 Query: 435 INEVYTALNMIDYGLDNLPGG--PLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQK 492 + E+ +L +I+ ++ + ++ P+ F + E RG+ H +T K Sbjct: 405 VEEIMHSLKLINILIEESENTASEVHMQDQILAPNAFIITLNEGWRGEISHCILTDKKGK 464 Query: 493 LYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 + R++ + ++ NW L LR +SD PL S + Y D Sbjct: 465 VQRYKIKDPSFHNWTGLAMSLRNQEISDFPLCNKSFNLSYCGFD 508 >UniRef50_B3E6C1 NADH-ubiquinone oxidoreductase chain 49kDa n=2 Tax=Deltaproteobacteria RepID=B3E6C1_GEOLS Length = 506 Score = 362 bits (929), Expect = 2e-98, Method: Composition-based stats. Identities = 121/484 (25%), Positives = 194/484 (40%), Gaps = 15/484 (3%) Query: 53 QGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAV 112 +G +S G +G +Y +L+ I + N E+PS+ + P Sbjct: 37 RGWRVSSYCG---FPADGAITLYCLLASPADGVLGIMQTI---CNGTEFPSIAVQCPQLQ 90 Query: 113 WGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFIN 172 ERE+ + G+ VG P + + D R Sbjct: 91 LFEREIAEQCGIRFVGHPWFKPVRFVHS--------AVRGHDAWGRADDQPIQVGVMEYY 142 Query: 173 ELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNE 232 + ++ + V +GP+H EPGHFR GE + + L Y HRG+E+L + Sbjct: 143 RVEGEEIHEVAVGPVHAGVIEPGHFRFQCHGEQVFHLEISLGYQHRGIEQLLLNGPH-PQ 201 Query: 233 VTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLAC 292 + + G H AY +E+ P A +R I LE+ERL +H +LG Sbjct: 202 TLRQMEAIAGDTSIGHGLAYCMVLESLSKSHPPATAHALRGIALELERLANHTGDLGAIA 261 Query: 293 HFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQM 352 G+ R+R + M+ + G+R GL GG L + + + Sbjct: 262 GDVGYLPTASFCGRIRGDFLNMSAFICGSRFGRGLLKPGGTVFGLDQAQREELQNRLATG 321 Query: 353 RREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGY 412 R E+ +++L +TP++ R G G + E A + VGP RA G RD R+D+PF Y Sbjct: 322 RAELTSAIELLWNTPSVMSRLEGTGVVSAESAVEMGLVGPAARACGLKRDVRSDYPFGIY 381 Query: 413 GLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALG 472 + + + + DV SR VR E +L+ L LP G E + + Sbjct: 382 RMAQVPIATAHHGDVCSRSSVRWEECQKSLDFCVEQLRQLPKGAHAAELKPLQGDQLTVA 441 Query: 473 FAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCY 532 E RG+ H ++T + +++ ++ NW L LR +SD PL S + Y Sbjct: 442 LTEGWRGEICHLAITDSAGRFRQYKITDPSFHNWQGLAMALRNEQISDFPLCNKSFNLSY 501 Query: 533 SCTD 536 D Sbjct: 502 CGFD 505 >UniRef50_Q6MDR3 NADH-quinone oxidoreductase subunit D n=2 Tax=Parachlamydiaceae RepID=NUOD_PARUW Length = 402 Score = 362 bits (929), Expect = 3e-98, Method: Composition-based stats. Identities = 110/403 (27%), Positives = 188/403 (46%), Gaps = 28/403 (6%) Query: 162 TTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGME 221 T + +GP H ++ +L ++GE ++ D + Y+H G+E Sbjct: 1 MTKVSKERLKELEESGDVMELNLGPQHPSTHGVLRLKLRLEGEVVLSCDPVIGYLHTGVE 60 Query: 222 KLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERL 281 K E+R Y++V L DR+ + G A A+ ++E M I+VPERAQ IR ILLE+ R+ Sbjct: 61 KECESRT-YHQVFTLVDRLDYLSGPAEEQAFAGALERLMNIEVPERAQTIRIILLELSRI 119 Query: 282 HSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDD 341 SHLL G + S FM F RE + + E ++GAR L IGG+ +DL D Sbjct: 120 ASHLLWAGTSALELNMSSVFMYSFAEREKILDLFEQVSGARMFPSLWRIGGLAKDLNSDF 179 Query: 342 MIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHAR 401 + ++ ++ +EL +L +R G+ +D EI + + GP++RASG + Sbjct: 180 ISHLKEFISGFQKIWKELDRLLTDNFVWCKRLQGVAVIDQEICKQYMCTGPVLRASGISY 239 Query: 402 DTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEG 461 D R +P++GY ++ + D +R VR+ E+ ++++I+ + L G ++ Sbjct: 240 DIRKAYPYLGYENYNFDIPTHIDGDSYARYLVRMEEMLQSISIIEQAIARLKPGVVLTND 299 Query: 462 FTY---------------------------IPHRFALGFAEAPRGDDIHWSMTGDNQKLY 494 P E+ RG+ H+ ++ K Y Sbjct: 300 RKVALPPRKELARSMEAVIHQFKLISEGLHPPVGSVYNCVESARGELGHYVISDGTPKPY 359 Query: 495 RWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 R R R+ ++++ L+ +LRG+ +SD + I S+DP DR Sbjct: 360 RLRVRSPSFSHVEVLKKVLRGHVISDVVVAIASVDPILGDVDR 402 >UniRef50_A0B812 F420H2 dehydrogenase subunit C n=6 Tax=Archaea RepID=A0B812_METTP Length = 390 Score = 362 bits (928), Expect = 3e-98, Method: Composition-based stats. Identities = 120/389 (30%), Positives = 185/389 (47%), Gaps = 5/389 (1%) Query: 153 MDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYR 212 P E+ ++ +GP H P L ++GE + A Sbjct: 3 KAGVVPERPKYPTFREREEAEIKSDSEMIMHMGPQHAIVPGPFLLDLLIEGERVKKAFLD 62 Query: 213 LFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIR 272 + Y+H+G+EK+ E R Y + +DR+C + ++ AY +VE +GI PERAQ IR Sbjct: 63 VGYIHKGIEKIMENRT-YLQGIVYTDRMCYLASITNNEAYCGAVEKLLGITPPERAQYIR 121 Query: 273 AILLEVERLHSHLLNLGLACHFTGFDS--GFMQFFRVRETSMKMAEILTGARKTYGLNLI 330 IL E+ R+ SHLL G G + F RE + + E +TGAR T+ Sbjct: 122 VILAELSRIQSHLLGTGEFLTLLGAATYSPFQYMIIDREDIVYLMESITGARITHTFVRF 181 Query: 331 GGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNV 390 GG+R DL + R + ++MR +E +D+L S P +R GIG L P AR Sbjct: 182 GGVRNDLPDGFADKARPILKRMRERTEEYMDLLHSDPIYTRRMRGIGVLSPGDARRLGVS 241 Query: 391 GPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLD 450 GP +RAS D R + P + Y L +V + + D +R++VR+ E+ ++++I+ LD Sbjct: 242 GPPLRASDTPYDMRREDPILVYPDLDFKVVTRKAGDAEARVEVRLEEILESIHIIEQCLD 301 Query: 451 NLPGGPL--MVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPT 508 +P GP+ + A E PRG+ + ++ ++K YR + R YA Sbjct: 302 QIPDGPIQEKLPKKIKPEPGEAYYRVEDPRGEMGFYVVSDGSEKPYRVKVRGPVYAYMQA 361 Query: 509 LRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 L +L G V+D I GS+D C S DR Sbjct: 362 LPPLLEGAYVADVVAIAGSMDACTSEVDR 390 >UniRef50_A5GBN1 Ech hydrogenase subunit E n=20 Tax=cellular organisms RepID=A5GBN1_GEOUR Length = 359 Score = 361 bits (926), Expect = 5e-98, Method: Composition-based stats. Identities = 137/362 (37%), Positives = 203/362 (56%), Gaps = 3/362 (0%) Query: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235 + N++PIGP H EP HF L + E +IDA + YVHRG+E+L E R + Sbjct: 1 MAQRNIIPIGPQHPILPEPIHFDLVTEDEKVIDAIPSISYVHRGLERLVEKRDFI-DFAH 59 Query: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 295 ++DR+CG+C F HS Y +VE M I+VP+RA +R+I E+ R+HSH+ LG A Sbjct: 60 VADRICGLCSFMHSLGYCQAVEEIMSIEVPQRALYLRSIWAELSRIHSHIFWLGAAADAF 119 Query: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 355 GF+S FMQ R+RE + + E TG R G+ +GG+RRD+ D + ++ Sbjct: 120 GFESLFMQAMRLREPVLDIFEETTGGRVILGVCKVGGVRRDIDGDSLKGIVNRLTTLKGA 179 Query: 356 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415 ++EL +V L+ +++ R G+G L E A VGPM RASG A D R + Y L Sbjct: 180 LEELSNVFLNDYSVQHRLAGVGFLSREDAYTLGCVGPMARASGLAIDMR-ALGYAAYKYL 238 Query: 416 PMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAE 475 +E E D +R +VRI E++ A+++I + +P GP+ V T P E Sbjct: 239 EVEPVVESAGDCHARCRVRIREIFHAIDLIRQAVGKIPAGPVDV-KVTGTPDGEYYSRVE 297 Query: 476 APRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCT 535 PRG+ IH+ + L R+R R T++N P + +L+G+ ++D P II +LDPC SCT Sbjct: 298 QPRGEVIHYVKGNGARFLQRFRVRVPTFSNIPAMVKVLKGSQLADVPNIILTLDPCISCT 357 Query: 536 DR 537 +R Sbjct: 358 ER 359 >UniRef50_Q4P4N9 Putative uncharacterized protein n=1 Tax=Ustilago maydis RepID=Q4P4N9_USTMA Length = 498 Score = 360 bits (925), Expect = 6e-98, Method: Composition-based stats. Identities = 100/448 (22%), Positives = 171/448 (38%), Gaps = 54/448 (12%) Query: 143 DELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVD 202 P + + ++ V GP H + L ++ Sbjct: 52 APTSPATSAFTVEELHDKSAHEILREGGSRKDRSLRHFTVNFGPQHPAAHGVLRLILELN 111 Query: 203 GENIIDAD--------------------------YRLFYVHRGMEKLAETRMGYNEVTFL 236 GE I+ D + +HRG EKL E + Y + Sbjct: 112 GEEILRTDLAICKANIADSIQSCLFWPSGVCILQPHVGLLHRGTEKLIEYKT-YTQALPY 170 Query: 237 SDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTG 296 DR+ + + Y+ +VE + I+VPERA+ IR + E+ R+ +H + + G Sbjct: 171 FDRLDYVSMMTNELCYSRAVEKLLNIEVPERAKWIRTMFGEITRILNHCMAVLSHVMDVG 230 Query: 297 FDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREV 356 + F+ F RE M+ E ++GAR GG+ DL + + A Q V Sbjct: 231 GLTPFLWAFEEREKLMEFYERVSGARLHAAYVRPGGVAYDLPPGLLDDIHKWATQFGSRV 290 Query: 357 QELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLP 416 E+ +V+ + RT+GIG++ + A D+ G M+R SG D R P+ Y + Sbjct: 291 DEIEEVVTGNRIWKGRTIGIGKVTAQEALDYGFSGVMLRGSGIPWDIRKVAPYDAYDQVE 350 Query: 417 MEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTY------------ 464 +V + D R R+ E +L +I+ L+ +P G + V+ Sbjct: 351 FDVPVGKNGDCYDRYLCRVEEFRQSLRIIEQCLNKMPAGQIKVDDHKLVPPPRATMKESM 410 Query: 465 ---------------IPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTL 509 +P EAP+G+ + ++ + YR + RA +A+ Sbjct: 411 ESLIHHFKLFSEGYAVPPGETYSAIEAPKGEMGVYLVSDGTNRPYRCKIRAPGFAHLAGA 470 Query: 510 RYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 +M R + + D IIG+LD + DR Sbjct: 471 DFMARHHYIPDMVAIIGTLDLVFGEVDR 498 >UniRef50_D2LAG1 NADH-ubiquinone oxidoreductase chain 49kDa n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2LAG1_9DELT Length = 409 Score = 360 bits (925), Expect = 6e-98, Method: Composition-based stats. Identities = 135/411 (32%), Positives = 201/411 (48%), Gaps = 52/411 (12%) Query: 177 KKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFL 236 ++P GP H EP H +L ++ E +I+A L YVHRG+E+L E R +N++ + Sbjct: 1 MARTILPFGPQHPVLPEPLHLKLTIENETVIEALPTLGYVHRGLERLCEIR-DFNQMIQI 59 Query: 237 SDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTG 296 +RVCGIC H+ Y VE MG++VP RA+ +R I E+ R+HSHLL LGL G Sbjct: 60 VERVCGICSCLHALCYCEGVEQIMGVEVPRRAKYLRTIWGELHRMHSHLLWLGLFADAFG 119 Query: 297 FDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREV 356 F+S FMQF+RVRE M + E G R +N+IGG+RRDL + + Q +E+ Sbjct: 120 FESLFMQFWRVRERIMDIMEATCGNRVVVSVNVIGGVRRDLSPEQCLWIEQQLALSEKEI 179 Query: 357 QELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLP 416 ++L +L+ +++RTVGIG L E A VGPM+R SG A+D R + + L Sbjct: 180 KQLQTTILNDYTVKKRTVGIGVLSKEKAYQLGAVGPMLRGSGWAQDARQT-GYAAFDELG 238 Query: 417 MEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVE---------------- 460 E E G D +R VR E +++++ + +P G V Sbjct: 239 FEPVVEYGGDSYARCAVRFRETLQSIDIVRLAIARMPAGETSVNVEGAMEDDTPRPVVAG 298 Query: 461 ----------------------------------GFTYIPHRFALGFAEAPRGDDIHWSM 486 P A+ E PRG+ +++ Sbjct: 299 ERRDIMQAYNRDKHHKITAAPPPNLDLPTGLVAAKVKGKPDGEAVTRVEQPRGELMYYIK 358 Query: 487 TGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 ++ + R R R T+AN P L +L G ++D P+I+ S+DPC SCT+R Sbjct: 359 GNGSKNMERVRIRTPTFANIPPLLAILPGCELADVPVIVLSIDPCISCTER 409 >UniRef50_Q0W3I1 Ech hydrogenase, subunit E n=2 Tax=Euryarchaeota RepID=Q0W3I1_UNCMA Length = 359 Score = 359 bits (921), Expect = 2e-97, Method: Composition-based stats. Identities = 130/358 (36%), Positives = 203/358 (56%), Gaps = 3/358 (0%) Query: 181 VVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 240 V GP H EP +L +DGE + D + YVHRG+EK E YN+ +L++RV Sbjct: 4 TVQFGPQHPVWIEPIRLKLALDGELVKDVELEAGYVHRGLEKKFE--WDYNKAAYLAERV 61 Query: 241 CGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG 300 CGIC HST + +VE+ M +++P RA +IR I+LE+ERLHSHLL +GL GF++ Sbjct: 62 CGICTQHHSTCFCLAVESTMKLEIPRRAAVIRNIMLELERLHSHLLAIGLTLEAIGFENL 121 Query: 301 FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELV 360 FM FR RE + + E TG R +G+NL+GG+ R++ + + + + ++L Sbjct: 122 FMLCFRNREIVLDVFERTTGNRVLHGINLVGGVTRNIGPEMAQEIMDFCDTIEKRCRDLE 181 Query: 361 DVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVH 420 D+++ + ++ R G+G L + A D+S VGP+ R SG D R D P++ YG L M+ Sbjct: 182 DMIVHSRTIKDRMKGVGILSKQTALDYSVVGPIARGSGIPYDVRIDAPYLLYGELKMKHV 241 Query: 421 SEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMV-EGFTYIPHRFALGFAEAPRG 479 E+GCDV +R VR+ E++ ++++I + L G P + +P E PRG Sbjct: 242 VEEGCDVWARSIVRVRELFQSIDLIRQLVPMLEGLPDDILAKSKTMPDGDGFARVEPPRG 301 Query: 480 DDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + ++ +++L R + R +TYAN P L +++G ++D I S DPC C DR Sbjct: 302 ELFYFVRGKKSKELDRVKVRTSTYANGPALIPVIKGCQLADVGPITISYDPCIGCFDR 359 >UniRef50_C6PUG2 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PUG2_9CLOT Length = 526 Score = 359 bits (921), Expect = 2e-97, Method: Composition-based stats. Identities = 128/531 (24%), Positives = 234/531 (44%), Gaps = 11/531 (2%) Query: 11 LAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVLFGNDERKLNG 70 + E + + + K+++ V V+++++ ++ K F D Sbjct: 3 IDLFKEELSNLKYNSEIKNKNEIYVDVEISHVKSLISLFLVKYKLKFIAQFCVDNSNEEN 62 Query: 71 ---HYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPV 127 + + +LS K + ++ VR + + + + ERE+ D++GL Sbjct: 63 AQNDFMINIILSNSKK-RYFVIVRYKTQEE---IKTFQDILFQSHLFEREMCDLFGLKIK 118 Query: 128 GLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPL 187 D R++V + WP+++YPLRK + + E + +GP+ Sbjct: 119 DGIDTRKIVKHEKWPEDVYPLRKSFPYGAKLEEK--NEILPYKCKEAFGDGAYQISVGPV 176 Query: 188 HVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFA 247 H EPGHFR V GE I + + RL Y HRG+EK+ E + +++ + +R+ A Sbjct: 177 HAGIIEPGHFRFSVIGEAIENLELRLNYKHRGIEKICEN-VDASKLNLVFERMACESSAA 235 Query: 248 HSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRV 307 ++ +Y VE + P+ + +R +LLE+ER+++ L ++ C GF +F Sbjct: 236 YAESYALLVEKLLSYDTPQEIKALRVVLLELERIYNFLGDISGICVDIGFSYPAKRFGAF 295 Query: 308 RETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTP 367 E K+ E +TG+R + + GI D K+ + ++ M++ + +++++ L + Sbjct: 296 GEQIHKLCERITGSRFMRNVIIPCGINIDFTKEHIEDIKKTLNGMKKRMDKIIEITLDSV 355 Query: 368 NMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDV 427 + R G + + A+ G RASG D R P+ YG+L ++ + V Sbjct: 356 SFLDRVENTGIVRNKTAKKLYMTGITGRASGINYDVRKSFPYEIYGILKKNNNTLEIGGV 415 Query: 428 ISRLKVRINEVYTALNMIDYGLDNLPGGPLMVE-GFTYIPHRFALGFAEAPRGDDIHWSM 486 R K++I E+Y A N I LD + L + F + AL E +G+ I + Sbjct: 416 FERYKLKIKEIYDAYNFIFASLDFINKDILKTKTEFKLVEETEALAAVETVKGELIVYGK 475 Query: 487 TGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 G + K R + + NW L Y + G V D PL S + YS D+ Sbjct: 476 VGKDNKFNRIYFKTPSVTNWNGLTYAVLGEIVPDFPLCNKSFNMSYSENDK 526 >UniRef50_B1ZUJ2 NADH-quinone oxidoreductase subunit D 2 n=5 Tax=Bacteria RepID=NUOD2_OPITP Length = 399 Score = 358 bits (919), Expect = 3e-97, Method: Composition-based stats. Identities = 105/388 (27%), Positives = 171/388 (44%), Gaps = 4/388 (1%) Query: 153 MDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYR 212 TT + + +GP H + + +DGE + +A+ Sbjct: 13 PATSAPTLRTTAEIAATAAMGHAPHETFTINLGPQHPAAHGVLRVLMRMDGEWVENAEPV 72 Query: 213 LFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIR 272 + Y+HR EK+ E R + + R+ + ++ A+ VE + I+VPERA+ IR Sbjct: 73 IGYIHRMHEKMGENRTWA-KFLPNTSRIDYLSAMHYTHAWVGVVERGLKIEVPERAEYIR 131 Query: 273 AILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGG 332 I E+ R+ SH + G G + + F RE + + E L GAR TY GG Sbjct: 132 VITSELNRIASHQVWWGALLLDLGGFTPILYAFDDREKILDLLEGLCGARLTYCYYRFGG 191 Query: 333 IRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGP 392 + D D + TR+ + MR ++ D++ + QR GIG + + R + GP Sbjct: 192 LYNDADDDFLKGTREFVKYMRPRLKMYRDLVTDNVILRQRLTGIGPISADTCRKYGATGP 251 Query: 393 MVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNL 452 ++R SG A D R P+ Y L ++ + CD ++R VR++E+ +LN+I+ LD + Sbjct: 252 VIRGSGVAYDVRRAEPYSVYPKLQFKIPTYPECDSMARYLVRMDEMEESLNIIEQCLDLI 311 Query: 453 PGGPLMVEGFTYI---PHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTL 509 GP M + P EA RG + ++ + YR R R ++ N Sbjct: 312 QPGPFMAPKVPRVIRLPAGDYTYAVEAARGRFMVRVVSDGKENPYRARLRTPSFGNLSLF 371 Query: 510 RYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 RG + DA ++GSLD DR Sbjct: 372 EETSRGMLLPDALAMMGSLDLVIPDIDR 399 >UniRef50_Q1QP34 NADH-quinone oxidoreductase subunit D 1 n=9 Tax=cellular organisms RepID=NUOD1_NITHX Length = 396 Score = 358 bits (919), Expect = 4e-97, Method: Composition-based stats. Identities = 97/392 (24%), Positives = 161/392 (41%), Gaps = 32/392 (8%) Query: 177 KKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFL 236 +N + GP H + L +DGE + D + +HRG EKL E + Y + Sbjct: 6 PRNFTINFGPQHPAAHGVLRLVLELDGEVVRRVDPHIGLLHRGTEKLIEHKT-YLQALPY 64 Query: 237 SDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTG 296 DR+ + A+ + E + I +P+R Q+IR + E+ RL SHLLN+ G Sbjct: 65 FDRLDYVAPMNQEHAFCLATEKLLNITIPKRGQLIRVLYCEIGRLLSHLLNVTTQAMDVG 124 Query: 297 FDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREV 356 + + F RE M E +GAR +GG+ +DL + + Sbjct: 125 ALTPPLWGFEEREKLMVFYERASGARMHANYFRVGGVHQDLPSKLLDDIWDFCDPFLKVC 184 Query: 357 QELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLP 416 +L +L +QR VGI + A + G MVR SG A D R P+ Y L Sbjct: 185 DDLEGLLTENRIFKQRNVGIAEVKLADAWGWGFSGVMVRGSGAAWDLRKAQPYECYSELD 244 Query: 417 MEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLP----GGPLMVEGFT--------- 463 ++ + D R VR+ E+ ++ ++ L+ L GP+ Sbjct: 245 FDIPIGKHGDCYDRYLVRMEEMRQSVRIMKQCLEKLRLPEGQGPVATRDHKIVPPSRAEM 304 Query: 464 ------------------YIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYAN 505 +P EAP+G+ + ++ + Y+ + RA ++A+ Sbjct: 305 KRSMEAMIEHFKLYTEGHRVPAGEVYVAVEAPKGEFGVYLVSDGTNQPYKCKIRAPSFAH 364 Query: 506 WPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + ++ RG+ ++D IIGSLD + DR Sbjct: 365 LSAMDFLTRGHMLADVSAIIGSLDIVFGEIDR 396 >UniRef50_C7N626 Ech hydrogenase subunit E n=25 Tax=cellular organisms RepID=C7N626_SLAHD Length = 362 Score = 356 bits (915), Expect = 9e-97, Method: Composition-based stats. Identities = 122/363 (33%), Positives = 185/363 (50%), Gaps = 2/363 (0%) Query: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235 K V+P GP H EP H L V E +I+ ++ ++HRG+EKL E + ++ + Sbjct: 1 MGKATVIPFGPQHPVLPEPLHLDLVVQDEKVIEVIPQIGFIHRGLEKLVEKK-DIHQFIY 59 Query: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 295 +++R+CGIC F HS Y +VE MG++VP RA+ +R IL E+ R+HSHLL LGLA Sbjct: 60 VAERICGICSFGHSLGYAETVEKLMGVEVPRRAEYLRVILHELSRIHSHLLWLGLAADAF 119 Query: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 355 GF++ FM +R+RE + + E TG R IGG+ RD+ +++ Q MR E Sbjct: 120 GFEALFMHSWRIRERVLDIFEATTGGRVILSAVQIGGVIRDIDDEELKQISATLDGMRSE 179 Query: 356 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415 EL+ L+ ++ R V +GRL A D VGP RAS D R L Sbjct: 180 YAELMATFLNDTSVRSRLVNVGRLTQTQAEDLCMVGPFARASNVKFDCRMLGNGAYGELE 239 Query: 416 PMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHR-FALGFA 474 + + D +R++VR EV ++++I + +P + P A Sbjct: 240 NFQPILDDEGDCYARVRVRCKEVIQSIDIIQELIAKIPHDGIGERSKLTPPDGAQAANVL 299 Query: 475 EAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSC 534 E PRG+ +++ ++ L R R R T N L G ++D P I+ ++DPC SC Sbjct: 300 EQPRGECYYYARGNGSKNLERMRMRTPTSQNLAGLVAACEGAELADVPNILLTIDPCISC 359 Query: 535 TDR 537 T+R Sbjct: 360 TER 362 >UniRef50_C7I0C0 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=1 Tax=Thiomonas intermedia K12 RepID=C7I0C0_THIIN Length = 532 Score = 353 bits (907), Expect = 7e-96, Method: Composition-based stats. Identities = 128/464 (27%), Positives = 203/464 (43%), Gaps = 13/464 (2%) Query: 77 VLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLV 136 +LS + V PS+ ++P W ERE+ D+YGL G P+ LV Sbjct: 79 LLSQGTKQPYKVW---RVRPEDRTLPSLANKLPLLGWYEREMMDLYGLRFEGHPEPNPLV 135 Query: 137 LPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGH 196 L + P + PL + ++ +P GP+ E Sbjct: 136 LHEGEPRDPAPLASGFDPAAPARDYAP---LPPIVPQVQGPDIQRLPFGPVRADIVESAQ 192 Query: 197 FRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSV 256 F F GE I+ RLFY HR ME + L++RV GI AH+ A+ +V Sbjct: 193 FLFFYIGEGILHYHPRLFYKHRAMEGRFQGATLATGAV-LAERVSGIDSVAHALAFAQAV 251 Query: 257 ENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAE 316 E AMG + P RA+ +R +L E+ERL++HL LG T G + + E ++ Sbjct: 252 EGAMGWRAPPRARYLRVVLAELERLYNHLHYLGHLSKTTTLKVGEAEGHLLEERVKQING 311 Query: 317 ILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGI 376 LTG+R GL GG+RRDL D+ + + E+ + L +T + R + Sbjct: 312 RLTGSRFLRGLITPGGLRRDL---DITGLDKALDSVNDEIDRYLQRLENTRSHLDRLMTT 368 Query: 377 GRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRIN 436 GRL+ ++A D GP+ RAS RD R DHP+ Y + V +QG D +R VR+ Sbjct: 369 GRLERQVAFDQGACGPIERASNLDRDLRRDHPYANYEKVRFSVPVQQGGDAHARSMVRME 428 Query: 437 EVYTALNMIDYGLDNLPGGPLMVEGF--TYIPHRFALGFAEAPRGDDIHWSMTGDN-QKL 493 E+ +L +I + G ++ P LG+ EA RG ++ ++ +L Sbjct: 429 EIRESLAIIRQTIGRTKPGEVLRFDVMEDADPQGEGLGWVEATRGGLLYAVHLSEDRTRL 488 Query: 494 YRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 R + + +++NW + + + + D + S + DR Sbjct: 489 QRVKIKEPSFSNWRVFPFTVEDSNMMDYAINEASFGLSIAGADR 532 >UniRef50_B4SJH6 NADH-quinone oxidoreductase subunit D 1 n=211 Tax=Proteobacteria RepID=NUOD1_STRM5 Length = 436 Score = 353 bits (907), Expect = 7e-96, Method: Composition-based stats. Identities = 104/436 (23%), Positives = 178/436 (40%), Gaps = 55/436 (12%) Query: 156 RQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFY 215 + +N V+ +GP H + L +DGE ++ AD + Sbjct: 2 NTERTMAGGPAPMRDGRRDTEIRNYVMNLGPQHPAAHGVLRLVLEMDGETVVRADPHVGL 61 Query: 216 VHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAIL 275 +HRG EKLAE++ +N+ DR+ + + AY ++E +GI+ P RAQ IR + Sbjct: 62 LHRGTEKLAESK-PFNQSIGYMDRLDYVSMMCNEHAYVRAIETLLGIEAPIRAQYIRTMF 120 Query: 276 LEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRR 335 E+ R+ +HL+N+G G + + FR RE M E ++GAR GG+ R Sbjct: 121 DEITRILNHLMNIGTGALDLGAMAVMLYAFREREELMDCYEAVSGARMHATYYRPGGVYR 180 Query: 336 DLLKDD-------------------------MIQTRQLAQQMRREVQELVDVLLSTPNME 370 +L + + ++ + E +L + Sbjct: 181 ELPEQMPKYKESRWKTGKQLRRLNAAREGSLLDFIENFTREFPNRIDEYETLLTDNRIWK 240 Query: 371 QRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISR 430 QRTVGIG + P+ A ++ G M+R SG A D R P+ Y + ++ D R Sbjct: 241 QRTVGIGVVSPQQAMEWGMTGVMLRGSGVAWDLRKKRPYAKYDAVDFDIPVGTAGDCYDR 300 Query: 431 LKVRINEVYTALNMIDYGLDNLP--GGPLMVEGFT------------------------- 463 R+ E+ + +I +D L GP+M+ F Sbjct: 301 YLCRVAEMRQSNRIIRQCVDWLRANPGPVMLHNFKVAPPSRQEMKSDMEALIHHFKLFSE 360 Query: 464 --YIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDA 521 +P EAP+G+ + ++ K +R RA +A+ +L ++RG+ ++D Sbjct: 361 GYQVPAGETYAAVEAPKGEFGCYLISDGANKPFRVHLRAPGFAHLSSLDEIVRGHMLADV 420 Query: 522 PLIIGSLDPCYSCTDR 537 +IG+ D + DR Sbjct: 421 VAMIGTYDIVFGEVDR 436 >UniRef50_Q30PI1 NADH-quinone oxidoreductase subunit D n=45 Tax=Epsilonproteobacteria RepID=NUOD_SULDN Length = 412 Score = 353 bits (905), Expect = 1e-95, Method: Composition-based stats. Identities = 102/405 (25%), Positives = 176/405 (43%), Gaps = 34/405 (8%) Query: 166 ETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAE 225 +E I + ++ GP H ++ L + E I+ A + Y+HRGMEK+AE Sbjct: 9 PFFENITFDREDNEMILNFGPQHPSAHGQLRLMLHLQQEMIVKAHPDIGYLHRGMEKMAE 68 Query: 226 TRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHL 285 M YNE +DR+ I A++ + +VE +G++VP RA++IR +LLE+ RL SHL Sbjct: 69 N-MIYNEFMPTTDRMDYIASSANNYGFALAVERLIGLEVPRRAKVIRMMLLEINRLMSHL 127 Query: 286 LNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQT 345 L G + F+ FR RE M + E GAR T+ IGG+ D+ + Q Sbjct: 128 FWLATTALDIGAMTVFLFAFREREYLMDIMEGYCGARLTHAAIRIGGVPLDIQDTFITQL 187 Query: 346 RQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRA 405 + ++ + +++ D+L + R +G + E+A + GPM+RASG A D R Sbjct: 188 KTFLDKLPQNIKDYEDLLDTNRIWLMRMEEVGVISKEMALSWGCSGPMLRASGVAWDIRK 247 Query: 406 DHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDN------------LP 453 + P+ Y + V D +R ++ + E+ + ++ +D + Sbjct: 248 EEPYELYDEVEFRVPYSDKGDNFARYRIYMEEMRESAKILYQTIDMYEKCVKDNQTELMA 307 Query: 454 GGPLMVEGFT---------------------YIPHRFALGFAEAPRGDDIHWSMTGDNQK 492 P + P E+P+G+ + + Sbjct: 308 HAPKYISAPKLDIMTQNYSLMQHFVLVTQGMRPPVGEVYVATESPKGELGFYINSQGGPY 367 Query: 493 LYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 YR + RA ++ + L +L G+ + D IIG+ + + DR Sbjct: 368 PYRLKLRAPSFWHTGILTDILPGHYIPDVVSIIGTTNIVFGEVDR 412 >UniRef50_C7LSU9 NADH-ubiquinone oxidoreductase chain 49kDa n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LSU9_DESBD Length = 493 Score = 352 bits (903), Expect = 2e-95, Method: Composition-based stats. Identities = 123/485 (25%), Positives = 201/485 (41%), Gaps = 30/485 (6%) Query: 52 KQGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAA 111 + G L FG +G V VL+++ + + + YPS+TP+ P A Sbjct: 38 ESGARLCSWFGV--PDHDGTILV-AVLALDSESILGV---ARSEPISGSYPSLTPKHPQA 91 Query: 112 VWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFI 171 EREV + +GL+PVG P + + + P Sbjct: 92 HLFEREVWEQHGLVPVGHPWLKPVRHTFENAPANAP-----------------------F 128 Query: 172 NELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYN 231 + + + V +GP+H EPGHFR GE ++ + L Y HRG+E + Sbjct: 129 FRVEGGEVHEVAVGPVHAGVIEPGHFRFQCAGEEVLHLEIALGYQHRGIEDALQNGPHPA 188 Query: 232 EVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLA 291 + + + V G AH+TA+ + +E G++ P RAQ +RA+ LE+ERL +H ++G Sbjct: 189 TMNQI-ETVAGDTTIAHATAHASVLEALGGVETPLRAQWLRAMALELERLANHTGDMGAL 247 Query: 292 CHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQ 351 F ++R + + +L G R GL GG R DL ++ + + + Sbjct: 248 AMDVAFLPTSAACGKIRGDFLNLTALLCGNRFGRGLIRPGGCRHDLEEERLKTLTERLKA 307 Query: 352 MRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVG 411 +V++ + ++ R +G + P A D VGP RA G RD R DHP Sbjct: 308 HMADVEQAMAWFWDAASVRVRFRNVGVVHPSQATDIGLVGPAARACGLVRDVRFDHPAGW 367 Query: 412 YGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFAL 471 + V D+ +R +VR E+ + + L G + P A+ Sbjct: 368 HRFSHSPVAVWPSGDIFARARVRSLEIQRSGRYLFDQLAAPVDGDITAALPAPQPESLAV 427 Query: 472 GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPC 531 E RG+ H ++T + ++ ++ NW L LRG VSD P+ S + Sbjct: 428 ALVEGWRGEVCHVALTDYFGRFRSYKITDPSFHNWTGLALSLRGTAVSDFPICNKSFNLS 487 Query: 532 YSCTD 536 Y D Sbjct: 488 YCGFD 492 >UniRef50_UPI0001C31275 NADH dehydrogenase I, D subunit n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31275 Length = 413 Score = 351 bits (902), Expect = 3e-95, Method: Composition-based stats. Identities = 94/389 (24%), Positives = 165/389 (42%), Gaps = 28/389 (7%) Query: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235 +++ V +GP H ++ L ++GE + D + YVH G+EK AE + Y +V Sbjct: 26 EQELMTVNMGPHHPSTHGVLRLILTLEGEMVRDVKPIIGYVHTGIEKTAEQKA-YWKVIP 84 Query: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 295 + +R+ + + ++ A+ +VE + + VP+RAQ +R I +E+ R+ SHL+ LG +C Sbjct: 85 VVERMDYLSYYFNAYAFCGAVEKLLEVDVPKRAQYLRVIHMELNRIMSHLVWLGTSCIDL 144 Query: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 355 G + FR RE + + E+ +G R +GG+ D+ + + ++ + MR Sbjct: 145 GAIGVWWYCFREREQVLDLFEMSSGQRMHTRYFQVGGVIEDIPRGWTERVKRFTKTMRER 204 Query: 356 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415 ++ +L QR G +D E GP++RA+G+ D R P+ Y Sbjct: 205 SEQYSALLDRNEIFLQRMRHTGTVDEETLLGLGVTGPLLRATGNPWDLRKAAPYCSYDDF 264 Query: 416 PMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFT------------ 463 + D R +VR E+ + +ID +D LP GP + E Sbjct: 265 RFRIPVGTEGDNYDRYRVRHAEILESCAIIDQAIDGLPEGPFITEDRKVALPPRHELATS 324 Query: 464 ---------------YIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPT 508 +P E+PRG+ + + + K R R ++ N Sbjct: 325 MEALIHHFKLVTEGFRVPPGEVYHPIESPRGELGCFVRSDGSSKPARVHMRDPSFVNLQA 384 Query: 509 LRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 R ++D + LDP DR Sbjct: 385 TAAATRDTYIADLVATLAMLDPILGGVDR 413 >UniRef50_Q5P2H0 Subunit of formate hydrogenlyase-like membrane complex, related to large subunit of hydrogenases n=15 Tax=Proteobacteria RepID=Q5P2H0_AZOSE Length = 551 Score = 350 bits (899), Expect = 6e-95, Method: Composition-based stats. Identities = 145/502 (28%), Positives = 222/502 (44%), Gaps = 10/502 (1%) Query: 35 VTVKVNYLPEVVEFLYYKQGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEV 94 V + + +G L L+G+D R + +AV + +G + + + Sbjct: 59 ARVDATQWSALALAVATAKG-RLVSLWGSDRRAMGDGFAVGAAYATAEG---LLWAELGL 114 Query: 95 DANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMD 154 D +P YP ++ AV +R D+ G+ D R + WP + +PLR Sbjct: 115 DVVRPAYPDISRFFVPAVRMQRAAHDLVGIDAEDSGDSRPWLRHGAWPADYFPLR----I 170 Query: 155 YRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLF 214 + + + +GP+H + EPGHFR V GE ++ + R Sbjct: 171 ENTGQERFAPQPDNYPFVFVEGDGVHEIAVGPVHAGTIEPGHFRFSVVGEKVLRLEERFG 230 Query: 215 YVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAI 274 Y H+G+E+ M +E L+ RV G A++ AY + E+A G+ VPERA +RA+ Sbjct: 231 YTHKGIERRFMG-MDIDEGARLAGRVSGDSTVAYAWAYAMAAESAAGVAVPERAAWLRAL 289 Query: 275 LLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIR 334 LLE ER+ +HL +LG + F QF R+RE ++ G R GG+ Sbjct: 290 LLERERVANHLGDLGALGNDAAFGFALAQFSRLREDWLRANFEAFGHRLLMDCIRPGGVA 349 Query: 335 RDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMV 394 RDL Q R+ A + EV EL D+ ++ R V GR+ PE+A G Sbjct: 350 RDLDAAAAAQLRRDAVALVAEVAELKDIYDEHAGLQDRFVTTGRVAPELAARLGLTGLAG 409 Query: 395 RASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPG 454 RASG D R D P+ Y L + ++ DV +R+ VR +E + +L +ID L LP Sbjct: 410 RASGQVADLRVDFPWPPYDKLAVTASTQFNGDVAARVAVRFDECFESLRLIDALLAALPD 469 Query: 455 GPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLR 514 GPL G+ E RG+ T ++ R C ++ NWP + + Sbjct: 470 GPLDAPVAIR-DAASGAGWIEGWRGEIFVALETDARGRIARCHCHDPSWQNWPVIEHASI 528 Query: 515 GNTVSDAPLIIGSLDPCYSCTD 536 N V+D PLI S + YS D Sbjct: 529 DNIVADFPLINKSFNLGYSAQD 550 >UniRef50_A9G9T3 NADH-quinone oxidoreductase subunit D 2 n=5 Tax=Myxococcales RepID=NUOD2_SORC5 Length = 388 Score = 350 bits (899), Expect = 6e-95, Method: Composition-based stats. Identities = 97/376 (25%), Positives = 156/376 (41%), Gaps = 10/376 (2%) Query: 171 INELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGY 230 + +GP H ++ F + DGE I A + Y+HR +EK+ E R Y Sbjct: 14 EPGAEMDDEMTLNMGPHHPSTHGVLRFVISTDGEIIRKAVPDVGYLHRSIEKIGE-RCTY 72 Query: 231 NEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGL 290 + +DRV I + A+ ++ E MGI+VP+RAQ +R I E+ R+ SH++ LG Sbjct: 73 SGFMPYTDRVDYIAAMFANEAWASACEKLMGIEVPKRAQYLRVISCELNRIGSHMIALGA 132 Query: 291 ACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQ 350 G + F R RE E L GAR T+ + IGG+ D+ K + + Sbjct: 133 MAMDVGAVTPFPWALREREYINDFIEELCGARLTFNYHRIGGVSFDMPKGWADKVKHWLD 192 Query: 351 QMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFV 410 + + E ++ +R + + E A+D+ VGP +R SG D R + + Sbjct: 193 RFEPIMVEFDRLISLNDIFIKRLANVAVVTAEEAKDWGLVGPNLRGSGVKWDLRKEDAYS 252 Query: 411 GYGLLPMEVHSEQG-----CDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYI 465 Y L +V +G D R VR+ E + ++ LD + P Sbjct: 253 VYPELEFDVPVGRGRYGTVGDCWDRFYVRVEECRESAKILRQALDKIDEHPEDDILGKLP 312 Query: 466 ----PHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDA 521 P A E+ RGD + + ++ YR R R ++ + G ++D Sbjct: 313 KKMRPDGEAYARIESARGDMGCYVIGRGAEEAYRARFRTGSFTAMAMIEAKSPGLFLADL 372 Query: 522 PLIIGSLDPCYSCTDR 537 +I S D DR Sbjct: 373 VALIASFDVVAPEIDR 388 >UniRef50_UPI00016C492D NADH dehydrogenase subunit D n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C492D Length = 409 Score = 350 bits (899), Expect = 6e-95, Method: Composition-based stats. Identities = 108/395 (27%), Positives = 177/395 (44%), Gaps = 33/395 (8%) Query: 175 GDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVT 234 + + GP H + L +DGE I+ A + Y+H G EKL E + +N+ Sbjct: 16 DQEFLYTLNFGPQHPATHTTLRLILTLDGETIVKAVPDIGYLHSGFEKLGED-LDFNQYV 74 Query: 235 FLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHF 294 + DR+ I FA+ A+ T+VE +GI++ R + +R IL E+ R+ HLL +G A Sbjct: 75 TIVDRMNYISPFANECAWFTTVEKLIGIELTPRCKYLRTILAELARISDHLLCVGAAALD 134 Query: 295 TGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRR 354 G +GF+ F RE + E +G R +GG+ D+ D + R + R+ Sbjct: 135 LGALTGFLYAFNAREKVYNIMEAASGQRFHPSYCRVGGLMADVNDDVVALIRDFVKTFRK 194 Query: 355 EVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGL 414 ++ +L RT GIG L E A + S GP+ RASG RD R D P++ Y Sbjct: 195 VHADICRLLNRNRIFIDRTKGIGVLSKEDAINTSCSGPVARASGVVRDLRKDEPYLAYKE 254 Query: 415 LP--MEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYI------- 465 L ++ +G D +R VR+ E+ + +I+ ++NLP GP+ V+ + Sbjct: 255 LSGAFKIVCGKGGDCYNRYLVRMGEMLESWKIINAAVENLPSGPVNVDLNDKLTIPDKNA 314 Query: 466 -----------------------PHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAAT 502 P G E G+ + + K +R R R + Sbjct: 315 TYRSIEGLIQHFELFMWNRRWETPVEEVYGANETANGELGFYLVADGTGKAFRARTRPPS 374 Query: 503 YANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + ++ M+ G+ +SD P ++GSL+ + DR Sbjct: 375 FIHFAVFPMMMEGHQISDVPAVLGSLNIIAAELDR 409 >UniRef50_D2LH96 NADH-ubiquinone oxidoreductase chain 49kDa n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LH96_RHOVA Length = 504 Score = 348 bits (893), Expect = 3e-94, Method: Composition-based stats. Identities = 129/468 (27%), Positives = 215/468 (45%), Gaps = 25/468 (5%) Query: 69 NGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVG 128 + H+ + ++ + +++ ++ YPSV P A+ ER +RD+YG IP G Sbjct: 61 DDHHVRMALWDAQENCRAIVSLSLKA----GAYPSVGLHHPPALRLERAMRDLYGAIPDG 116 Query: 129 LPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLH 188 +PDERR + WP + E + + +P+GP+H Sbjct: 117 IPDERRWLDHGVWPGR-------------------EHEPGYHFLPVEGNGLHQIPVGPVH 157 Query: 189 VTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAH 248 EPGHFR +GE + + RL YVH+G+E LA+ + L+ R+ G A+ Sbjct: 158 AGIIEPGHFRFTANGETVARLEARLGYVHKGVEALAQG-ASIEKAAKLAARMSGDSTVAY 216 Query: 249 STAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVR 308 S A++ +VE A+G ++P RAQ++R ++ E+ERL H+ ++G C+ + +R Sbjct: 217 SFAFSRAVEAALGWEIPPRAQILRGVMAELERLSHHVSDVGGICNDAAVAVLLARCSLIR 276 Query: 309 ETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPN 368 E ++ L G R + GG+ RD+ L +++ +V +P+ Sbjct: 277 EDILRTQAALFGHRMMMDAIVPGGVARDIDAAGATAILALLERIEIGFHRVVRAYDQSPS 336 Query: 369 MEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVI 428 ++ RT G G + + R F+ G + RA G A D RA P+ Y + +V + + DV Sbjct: 337 IQNRTHGTGIVQLDFIRQFAAGGFVGRAGGRAFDARASFPYPPYNAVAFKVPTREESDVD 396 Query: 429 SRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTG 488 +R+ +RI E+ + +I L L GP+ + P EA RGD Sbjct: 397 ARIWIRIEEIAESAGIIRQLLAKLEDGPIHAAPPPFQP-GAGAALVEAFRGDLFLAVRIE 455 Query: 489 DNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 D ++ R A++ WP L + GN V+D PL S + YS D Sbjct: 456 DESRIAHMHARDASWFQWPLLETAIDGNIVADFPLCNKSFNCSYSGVD 503 >UniRef50_D2L9H0 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L9H0_9DELT Length = 494 Score = 347 bits (891), Expect = 5e-94, Method: Composition-based stats. Identities = 124/457 (27%), Positives = 187/457 (40%), Gaps = 22/457 (4%) Query: 81 EKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDD 140 + + +D YPS+TP P W ERE+ + +G++P G P + + Sbjct: 58 DHDGRLAFCRTAPLDR----YPSLTPDCPQCHWFERELYEQWGILPDGHPWLKPIRFTTP 113 Query: 141 WPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLF 200 P P A ++ ++ + V +GP+H EPGHFR Sbjct: 114 -PGAGRP---------------RPAPGVTDYFQVRGEEVHEVAVGPVHAGIIEPGHFRFQ 157 Query: 201 VDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAM 260 GE + + L + HRG+E + V + G HS A+ +E Sbjct: 158 CFGEEVFHLEISLGFQHRGIEAMLAGGPDPRTV-HFMETAAGDTSIGHSLAHAAVIEALS 216 Query: 261 GIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTG 320 G P R + I LE+ERL +H +LG GF R+R + M +L G Sbjct: 217 GRTAPPRGRAIGRAALELERLANHTGDLGALAGDVGFLPTLSYCGRIRGDFLNMTALLCG 276 Query: 321 ARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLD 380 R GL GG D+ + + RR ++L ++ + R G G+L Sbjct: 277 NRFGRGLVRPGGTAFDVDTGLLRVLAGRLEAARRAAFGAAELLFASSTVLARFEGTGKLT 336 Query: 381 PEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYT 440 E A D VGP RA G ARD R P G G + + DV +R VR E+ Sbjct: 337 AEKALDLGLVGPPARACGLARDARRTFPQPGAGARDIALSLHDFGDVYARGLVRRLEMEA 396 Query: 441 ALNMIDYGLDNLPGGPLMVEGFTYIPHRF-ALGFAEAPRGDDIHWSMTGDNQKLYRWRCR 499 +L+ +D L +LP GP +P A+G E RG+ H ++TG + + ++ Sbjct: 397 SLDFLDGLLADLPDGPTRELLPGRLPPGRLAVGLIEGWRGEIRHVAVTGPDGRFLAYKII 456 Query: 500 AATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 ++ NW L LRG +SD PL S + Y D Sbjct: 457 DPSFHNWFGLAQALRGQQISDFPLCNKSFNLSYCGHD 493 >UniRef50_D1YVS8 Ech hydrogenase subunit E n=1 Tax=Methanocella paludicola SANAE RepID=D1YVS8_METPS Length = 360 Score = 346 bits (889), Expect = 9e-94, Method: Composition-based stats. Identities = 117/360 (32%), Positives = 192/360 (53%), Gaps = 4/360 (1%) Query: 180 NVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDR 239 + GP H EP +L DGE I D D YVHRG+EK E YN+ +LS+R Sbjct: 3 TTIQFGPQHPVWIEPLRLKLTTDGELIKDVDLEAGYVHRGLEKKFE--WDYNKAAYLSER 60 Query: 240 VCGICGFAHSTAYTTSVE-NAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFD 298 VC IC HST + VE G+++P RA +IR I+LE+ERLHSH L +GL GF+ Sbjct: 61 VCAICTQHHSTCFCLGVEGTMAGLELPRRAAIIRTIMLELERLHSHFLAIGLTLEAIGFE 120 Query: 299 SGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQE 358 + FM FR RE + + E TG R +G+N++GG+ R++ + + + + E Sbjct: 121 NMFMLCFRHREQVLDVFERTTGNRVLHGINIVGGVTRNIGPEMAKEILDFCDDIEKRAHE 180 Query: 359 LVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPME 418 + +++S+ ++QR G+G + ++A++ VGP+ R S D R P + Y + + Sbjct: 181 IERIIVSSYTIKQRMQGVGVMTEKMAKELGVVGPVARGSNVPYDVRHAAPHLLYREVKVT 240 Query: 419 VHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGP-LMVEGFTYIPHRFALGFAEAP 477 E+ D +R VR+ E++ ++++I + L G P + +P + EAP Sbjct: 241 PIVEKDGDCWARSLVRVRELFQSIDLIRQLVPLLDGTPDELFAKSKAMPEGENIARVEAP 300 Query: 478 RGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 RG+ ++ +++L R + R +TY N + +++G+ ++D LI + DPC C DR Sbjct: 301 RGELFYYVRGKKSKELDRVKVRTSTYGNGLGIAPLIKGSHIADVGLITITFDPCIGCFDR 360 >UniRef50_Q2WAW4 Ni,Fe-hydrogenase III large subunit n=11 Tax=Alphaproteobacteria RepID=Q2WAW4_MAGSA Length = 505 Score = 346 bits (887), Expect = 2e-93, Method: Composition-based stats. Identities = 116/440 (26%), Positives = 197/440 (44%), Gaps = 11/440 (2%) Query: 97 NKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYR 156 + + ++ P + ER + D++GL PVGL D R + WP + + Sbjct: 76 DDRRFLALGNVRPGVIRIERAIHDVWGLTPVGLEDRRHWLDHGRWPSRMPLAAQPMAPSA 135 Query: 157 QRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYV 216 + + + +P+GP+H EPGHFR GE ++ + RL Y Sbjct: 136 EP--------DRYPFLQAVGDGLHQIPVGPVHAGVIEPGHFRFHCQGEAVVRLEQRLGYQ 187 Query: 217 HRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILL 276 H+G+E L + ++ + RV G A+S A+ +VE A G +VP RA +R ++ Sbjct: 188 HKGIEGLLQG-APLDKAARIVARVSGDSTVAYSLAFARAVEAATGCEVPARAHWLRGVMA 246 Query: 277 EVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRD 336 E+ER+ +H+ ++G C+ F +RE ++ ++L G R + GG+ D Sbjct: 247 EMERVANHVFDIGAVCNDAAFAVMLSHMGVLREKVLRANDVLFGHRLNMDRIVPGGVSLD 306 Query: 337 LLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRA 396 L + + + L + +++ + +TP++ RTV G + + F G + RA Sbjct: 307 LSDEGVEALKHLLYGFGKLLEQGYQLYENTPSLSDRTVSTGIVQTSLIHRFGAGGFVGRA 366 Query: 397 SGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGP 456 SG D R + Y L M V DV +R+ VR E +L++I+ L +P G Sbjct: 367 SGRGHDARETPSYPPYDKLDMTVPVLTEGDVNARVLVRFAEAKESLHLINRMLHEMPEGA 426 Query: 457 LMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGN 516 + V +G AE+ RG+ + W G + + R ++ WP L + GN Sbjct: 427 VRVPLPEV--AGEGMGVAESFRGEVVVWLRLGADHVVERCHPHDPSWFQWPLLEAAIEGN 484 Query: 517 TVSDAPLIIGSLDPCYSCTD 536 V+D PL S + YS D Sbjct: 485 IVADFPLCNKSFNCSYSGHD 504 >UniRef50_D2PDB9 NADH dehydrogenase (Ubiquinone) n=10 Tax=Sulfolobaceae RepID=D2PDB9_SULIS Length = 410 Score = 345 bits (885), Expect = 3e-93, Method: Composition-based stats. Identities = 109/394 (27%), Positives = 182/394 (46%), Gaps = 29/394 (7%) Query: 171 INELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGY 230 ++ + +GP H S + ++G+ I D D + YVHR +EKL+E R Y Sbjct: 19 MSVEFIPVQGELNVGPQHPGS-GHMRIFVKLNGDIIEDVDLDVGYVHRTVEKLSENR-NY 76 Query: 231 NEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGL 290 + L +R + + Y +VE +G+ VPERAQ +R+ EV R+ SHL LG+ Sbjct: 77 MHLIPLVERPAILDSIHMNLGYIIAVEKILGVDVPERAQYLRSFAAEVNRIASHLYGLGI 136 Query: 291 ACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQ 350 F G +GFM F RE + + E LTGAR T + GG+RRD+ ++ T + Sbjct: 137 LSIFLGHSTGFMWGFGDREVWVTILEALTGARVTNSYVIPGGVRRDISQEIKDMTLKAIS 196 Query: 351 QMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFV 410 RR +++ + P++ R +G + E A + VGP +RASG D R P+ Sbjct: 197 YQRRRLEDWKKIFFYNPSIRARLENVGVMSKENAIKWGAVGPNLRASGVYYDVRKIEPYG 256 Query: 411 GYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGF-------- 462 Y L E+ + D ++R VR+ E+ ++ +++ + N+P G ++ + F Sbjct: 257 AYDKLDFEIPVYKEGDGLARGLVRLEEIEQSMRILEQIIKNIPEGNILSDRFFKQIPPTR 316 Query: 463 -------------------TYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATY 503 P A+ EA RG+ +++ ++ + K YR R +Y Sbjct: 317 LKKYWETYRRIVLPGYYASFRPPKGEAISRVEAGRGELVYYVVSDGSPKPYRLRMITPSY 376 Query: 504 ANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + + + +G+ +D I GSLD DR Sbjct: 377 RSIYVFKELCKGSRYADLVSIYGSLDYFPPEADR 410 >UniRef50_D2R4P3 NADH dehydrogenase (Quinone) n=3 Tax=Planctomycetaceae RepID=D2R4P3_9PLAN Length = 401 Score = 344 bits (883), Expect = 5e-93, Method: Composition-based stats. Identities = 100/397 (25%), Positives = 167/397 (42%), Gaps = 26/397 (6%) Query: 166 ETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAE 225 + + +V +GP H ++ L DGE + + L Y+HR EK+ E Sbjct: 6 DDPRVVEFDVRTDEMLVNMGPQHPSTHGVLRLVLRTDGEIVSQVEPHLGYLHRCAEKIGE 65 Query: 226 TRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHL 285 + +DR+ + + + +VE +G Q+ E+A+ +R I+ E+ R+ SHL Sbjct: 66 NLTP-RQWIPYTDRMDYLAAMNMNLGWALTVEKLLGHQISEKARHLRVIIAEMGRIASHL 124 Query: 286 LNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQT 345 + +G G S F+ FR RE + + E GAR TY GG DL K + + Sbjct: 125 VGMGAYGLDLGTFSPFLYAFREREKILDLFEEACGARLTYSYLTPGGATADLPKGWLQKC 184 Query: 346 RQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRA 405 + +Q +QE +L + +RT IG + E+A D+ GP++R SG D R Sbjct: 185 EEFLKQFEPVIQEYHALLTTNSIFVKRTAAIGIMSAEMAIDYGCTGPVLRGSGVDYDLRR 244 Query: 406 DHP---FVGYGLLPMEVHSEQG------------------CDVISRLKVRINEVYTALNM 444 D Y EV + D R VR+ EV ++++ Sbjct: 245 DGEERYTEMYDGYAFEVIVSRNGHYPADHDYPPVPKEAVLGDCWHRFYVRMLEVVQSIDL 304 Query: 445 IDYGLDNLP----GGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRA 500 + ++ ++ T +P A E PRG + ++ N +R R R+ Sbjct: 305 VRQAIERYSTASGDWGQPIKLTTKLPKGEAYLETECPRGQMGFYIVSDGNAIPWRVRARS 364 Query: 501 ATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 +++ N + RG ++D P I+GSLD DR Sbjct: 365 SSFCNLSITADLCRGCLIADVPAIVGSLDIVMGEIDR 401 >UniRef50_A1KEQ8 Possible formate hydrogenase hycQ (FHL) n=14 Tax=Actinomycetales RepID=A1KEQ8_MYCBP Length = 492 Score = 344 bits (883), Expect = 5e-93, Method: Composition-based stats. Identities = 132/503 (26%), Positives = 222/503 (44%), Gaps = 23/503 (4%) Query: 36 TVKVNYLPEVVEFLYYKQGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVD 95 V L E L+ L+++ +D+ V Y+ + + + V Sbjct: 10 RVSERGLIATAEQLWADSF-RLALVAAHDDGDS---LRVVYLF-LAGYPDRRVELEYVVP 64 Query: 96 ANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDY 155 A+ PE S+ A ERE+ D+YG+ PVG P RRLV WP + +P+R D+ Sbjct: 65 ADNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWP-DWHPMRTDAGPA 123 Query: 156 RQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFY 215 + + +P+GP+H EPGHFR V GE I+ RL++ Sbjct: 124 PEFTDTGAFPFL-----AVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWF 178 Query: 216 VHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAIL 275 VHRG+EKL R L++R+ G AH+ A++ ++E+A+GI++P +RA++ Sbjct: 179 VHRGIEKLFHGR-PATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEIHRLRALI 237 Query: 276 LEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRR 335 +E+ERL++H +LG + G+ R+RE ++ +TG R G GG+ Sbjct: 238 VELERLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVAL 297 Query: 336 DLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVR 395 L D + ++ E+ + L+ + R G L P+ A +G + R Sbjct: 298 RALPDT-----DELAALAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVAR 352 Query: 396 ASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGG 455 ASG D R +HP + LP+ DV++R VR +E + + + +++ G Sbjct: 353 ASGLRSDARVEHPTIV---LPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVES-HTG 408 Query: 456 PLMVEGFTYI--PHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYML 513 P+ + +G E RG +H + ++ R + ++ NWP L + Sbjct: 409 PIEYAATLHPVGAPSSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAM 468 Query: 514 RGNTVSDAPLIIGSLDPCYSCTD 536 V D PL S + Y+ D Sbjct: 469 ADTIVPDFPLANKSFNQSYAGND 491 >UniRef50_A3ZL03 NADH dehydrogenase (Ubiquinone) n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZL03_9PLAN Length = 418 Score = 343 bits (881), Expect = 7e-93, Method: Composition-based stats. Identities = 99/393 (25%), Positives = 162/393 (41%), Gaps = 27/393 (6%) Query: 171 INELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGY 230 + +V +GP H ++ L DGE + +A + Y+HR EK+ E Sbjct: 27 VEIDVRTDEMLVNMGPQHPSTHGVLRLVLRTDGEVVSEATPHIGYLHRCAEKIGENLTP- 85 Query: 231 NEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGL 290 + +DR+ + G + + +VE + +PE+A+ +R I+ E+ R+ SHL+ +G Sbjct: 86 RQWIPYTDRMDYLAGMNMNLGWALAVEKLIDYDLPEKARHLRVIIAELNRIASHLVGMGT 145 Query: 291 ACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQ 350 G S F+ FR RE + + E GAR TY GG DL + + Sbjct: 146 YGLDLGSFSPFLYAFRERERILDLLEDACGARLTYSYLTPGGATADLPPGWLQKLTGFLD 205 Query: 351 QMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHP-- 408 Q + + +L + +RT IG + E+A D+ GP++R SG D R D Sbjct: 206 QFEPVILDYHALLTNNAIFIKRTANIGVMSAEMAIDYGCSGPVLRGSGVDYDLRRDGEER 265 Query: 409 -FVGYGLLPMEVHSEQG------------------CDVISRLKVRINEVYTALNMIDYGL 449 Y EV E+ D R VR+ EV A++++ G+ Sbjct: 266 YTSLYAGYAFEVIVEKNGSYPRDHEYPPVPSDAVLGDCWHRFYVRMLEVIQAIDLLRQGI 325 Query: 450 DNLP----GGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQ-KLYRWRCRAATYA 504 + ++ T +P A E PRG + ++ + R R R++ + Sbjct: 326 EKYSQATGDWGTPIKLATKLPKGEAYLETECPRGQMGFYIVSDGSGSIPLRARARSSCFC 385 Query: 505 NWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 N + R ++D P IIGSLD DR Sbjct: 386 NLSVAPELCRDCLIADVPAIIGSLDIVMGEIDR 418 >UniRef50_C6HVM5 Putative hydrogenase-3 subunit (HycE) n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HVM5_9BACT Length = 512 Score = 343 bits (880), Expect = 1e-92, Method: Composition-based stats. Identities = 120/450 (26%), Positives = 193/450 (42%), Gaps = 8/450 (1%) Query: 87 WITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELY 146 + + + + + +PS++ P A ER + D++GLIP GL D R + W Sbjct: 70 LVLLSLSLPKDAVSFPSLSSIFPPAARFERTIHDLFGLIPDGLADLRPWIDHGLWSHP-- 127 Query: 147 PLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENI 206 PL + + + +P+GP+H EPGHFR V GE + Sbjct: 128 PLSHTPSPLTRLAQGMDYPFV-----RVRGDGVHEIPVGPVHAGIIEPGHFRFSVVGEKV 182 Query: 207 IDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPE 266 + + R+ Y H+G+ +L R E L+ R+ G A S A++ +VE A+ I++ E Sbjct: 183 LRLETRMGYTHKGIARLFRGR-NLPEAARLASRISGDSAVATSLAFSKAVEEALDIEISE 241 Query: 267 RAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYG 326 + +RAILLE ER+ +HL +LG + G F +RE ++ L G R + Sbjct: 242 GVRFVRAILLERERIANHLADLGALGNDAGLAVALSLFHPLREAMHRINLSLFGHRLLFD 301 Query: 327 LNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARD 386 + GG+ L + ++++ EV L + ++ R G L PE+A Sbjct: 302 SVVPGGVSTGLSGAMIETLLLENERLQAEVSLLERIYADHGGLQDRFQNTGILSPEVAGR 361 Query: 387 FSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMID 446 G RASG D R DH + + DV SR+++R E++ +L + Sbjct: 362 LGIGGVAGRASGQGWDLRVDHREDPVHRFAPALALDHIGDVASRVRIRFFEIFESLRLTH 421 Query: 447 YGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANW 506 L + PG + R G E RG+ + W + L + W Sbjct: 422 ALLTSFPGPDICATIPDPPAPREGAGIVEGFRGEVLGWVRILPGKILADAHIADGSPLLW 481 Query: 507 PTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 L + GN V+D PLI S +P YS +D Sbjct: 482 HALEASVPGNLVADFPLINKSFNPSYSASD 511 >UniRef50_C9RKY1 NADH dehydrogenase (Quinone) n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RKY1_FIBSS Length = 379 Score = 343 bits (880), Expect = 1e-92, Method: Composition-based stats. Identities = 97/369 (26%), Positives = 166/369 (44%), Gaps = 4/369 (1%) Query: 172 NELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYN 231 + + + +GP H ++ L +DGE I++ Y+HRGMEK AE+ M Y Sbjct: 12 ERKSNTEEFFINMGPQHPSTHGALRLTLRMDGETIVEVVPHFGYIHRGMEKQAES-MSYL 70 Query: 232 EVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLA 291 + +SDR + ++ ++E M + VP R + IR +L E+ R+ SHL+ G Sbjct: 71 QYIAMSDRQDYLTAIQNNLGVVIALEKGMNVGVPLRGEYIRVMLQELGRIASHLVFYGCF 130 Query: 292 CHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQ 351 G + + F+ RE + E +TG+R T GG R D+ + + + Sbjct: 131 GGDLGGQTCLLFGFKEREMIHDILEEVTGSRLTTNFFRPGGSRYDVPDTFIPRVKAFLDH 190 Query: 352 MRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVG 411 M +++ L + +R++GIG L E A + GP++RASG D R +P+ Sbjct: 191 MEDTMKDYERFLSKNIIVLERSIGIGVLSKEDAIAYGCSGPVLRASGVNFDVRRANPYSI 250 Query: 412 YGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLP-GGPLMV-EGFTYIPHRF 469 Y L +V D R K+RI E++ ++ ++ ++ P GP E +P Sbjct: 251 YDQLDFDVPVFHNGDCYDRYKIRIAEIHESMKILRQCVEKFPTEGPWRSKEKPVRLPVGR 310 Query: 470 ALGFAEAPRGDDIHWSMTGDNQ-KLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSL 528 E +G + + K YR R ++ + + M +G+ +SD I+ +L Sbjct: 311 YYSEIETAKGLYATYVVAATTGEKPYRIHTRGPSFPHIAAINKMAQGHKISDLVTIMATL 370 Query: 529 DPCYSCTDR 537 DP DR Sbjct: 371 DPVIPEIDR 379 >UniRef50_B9L8U2 Ech Hydrogenase, Subunit n=3 Tax=Epsilonproteobacteria RepID=B9L8U2_NAUPA Length = 361 Score = 343 bits (879), Expect = 1e-92, Method: Composition-based stats. Identities = 121/362 (33%), Positives = 186/362 (51%), Gaps = 1/362 (0%) Query: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235 +VP G HV EP F E I D + YVHRG+EK A TR Y ++ + Sbjct: 1 MGNKIIVPFGSQHVALPEPVSFLFETQNEVITDVTVNIGYVHRGIEKAAITRFEYTQLPY 60 Query: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 295 L RVCG+C H+ AYT +E +GI+ ++ +R +++E++R+HSH+L G Sbjct: 61 LVARVCGLCSITHAGAYTHGIEKLLGIETNKKIDYLRMLVVELDRIHSHMLANGHVAEVV 120 Query: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 355 G+++ FMQ FR RE M + E +TG R Y +IGG+ RD K+ R+ ++ Sbjct: 121 GYENLFMQTFRYREDVMDILERITGNRVQYDYQIIGGVARDFDKETEDFAREKLLTLKAN 180 Query: 356 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415 ++L++ + +T G+G + E+A F+ GP+ RASG D RA++ ++ + + Sbjct: 181 TEKLIEFFENDYTFALKTKGVGTISKEMAEKFNAAGPIARASGLETDARAEYDYLPFEEV 240 Query: 416 PMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAE 475 ++ + DV +R VR +E+ ++ M LD +P G V P E Sbjct: 241 GYKLQTRTEGDVWARNMVRFDEIMNSIEMCLNILDGIPEGEHRV-KVKGRPDGETFVRVE 299 Query: 476 APRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCT 535 APRG+ ++ + L R R R TYAN P L+ + G SDA I+ S DPC SCT Sbjct: 300 APRGECFYYLKGNKTKVLERVRIRVPTYANIPVLKELFVGEKYSDAQAIVLSFDPCMSCT 359 Query: 536 DR 537 R Sbjct: 360 AR 361 >UniRef50_C1XWY7 Ni,Fe-hydrogenase III large subunit n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XWY7_9DEIN Length = 426 Score = 341 bits (875), Expect = 4e-92, Method: Composition-based stats. Identities = 124/446 (27%), Positives = 185/446 (41%), Gaps = 27/446 (6%) Query: 96 ANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDY 155 + +PS+ PA W ERE+ + +GL+P G P + L Sbjct: 2 EAQGSFPSLAEEFPALDWFERELWEDHGLVPEGHPSLKPLRNHH---------------S 46 Query: 156 RQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFY 215 + + VP+GP+H EPGHFR V GE I+ + RL Y Sbjct: 47 VYSRQAVPKGIVRLPYPFDRVEGLHEVPVGPVHAGIIEPGHFRFSVLGERILHLEVRLGY 106 Query: 216 VHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAIL 275 HRG+E+L + + + L++R G AH+ A+ +VE A+G++VP RA +R +L Sbjct: 107 QHRGVEQLFQGK-SLEQALLLAER-AGGEPVAHALAFCQAVEAALGVEVPPRAYRLRRVL 164 Query: 276 LEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRR 335 LE+ERL HL +L G+ Q +VR E LTG R +GG+ Sbjct: 165 LELERLFGHLGHLAGLFTDIGYAYAATQVGKVRALLQGQLERLTGHRYGRNALTVGGVGF 224 Query: 336 DLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVR 395 D+ + ++ R ++ E + + L P + R +G L AR VGP R Sbjct: 225 DIDPETQVEVRGALAKLAAEAETHLAAALKHPMVLDRLRYVGTLTQAQARWLGLVGPAAR 284 Query: 396 ASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLP-- 453 A G RD R D G DV++R +V E+ +D L LP Sbjct: 285 ACGLGRDLRQDDALYQ----TFTPVVRSGGDVLARAQVYAEELRQGFVYLDRFLGALPQG 340 Query: 454 ---GGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLR 510 GP A EA RG+ +W N ++ R + ++ NW L Sbjct: 341 EVANGPTTPRVDPVPATAEAYSRVEAGRGELFYWVRLRGN-RVERVKIVDPSFKNWRALE 399 Query: 511 YMLRGNTVSDAPLIIGSLDPCYSCTD 536 +RG + D P+I S D Y+ D Sbjct: 400 LAVRGMGLPDFPIINKSFDLSYAGCD 425 >UniRef50_A6LMC4 NADH-quinone oxidoreductase subunit D n=14 Tax=cellular organisms RepID=NUOD_THEM4 Length = 367 Score = 340 bits (872), Expect = 9e-92, Method: Composition-based stats. Identities = 93/368 (25%), Positives = 162/368 (44%), Gaps = 8/368 (2%) Query: 177 KKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFL 236 + GP H ++V+G+ ++ A ++HRG EKL E R+ Y L Sbjct: 1 MGEVKLFFGPNHPGMHGNFSVHMYVEGDTVVKARPLPGFLHRGFEKLMERRLWYQN-LAL 59 Query: 237 SDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTG 296 R+C + Y +VE I VPERAQ IR I+LE+ R+ +HL + G Sbjct: 60 IPRICVPEPDINELCYALAVEKIAKIDVPERAQWIRMIVLELARIANHLWSFSGIGGPIG 119 Query: 297 FDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREV 356 +G R+ + + E LTGAR + + GG+R+DL + + + Sbjct: 120 LYTGSFWGTADRDRILDIFENLTGARVYHMYIVPGGVRKDLTPKIEKMILETLDYIESRL 179 Query: 357 QELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLP 416 + ++L + R GI +LD E A + G +RA+G D R P++ Y + Sbjct: 180 PDYEKLILKNRIVHTRLKGIAKLDRETALEMGVTGVGLRATGVPYDIRKVDPYLFYDKVD 239 Query: 417 MEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFT------YIPHRFA 470 EV D +R+ ++ E++ ++ ++ L+ +P G + +P A Sbjct: 240 FEVPFSTDGDAFARVYLKFREIFQSIKIVKQALEKMPVGKVNTPISEGSALRFRVPKGQA 299 Query: 471 LGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATY-ANWPTLRYMLRGNTVSDAPLIIGSLD 529 E+ RG+ ++ ++ +K YR R A+Y + + L G + D P+ + ++D Sbjct: 300 YVHIESTRGEYGYYMVSDGGEKPYRVVVRGASYPQTFIGVEKYLPGTRIEDVPIWLSTMD 359 Query: 530 PCYSCTDR 537 C DR Sbjct: 360 VCAPEVDR 367 >UniRef50_A5FKI7 NADH-quinone oxidoreductase subunit D n=17 Tax=Bacteria RepID=NUOD_FLAJ1 Length = 412 Score = 340 bits (872), Expect = 1e-91, Method: Composition-based stats. Identities = 102/406 (25%), Positives = 178/406 (43%), Gaps = 29/406 (7%) Query: 159 PAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHR 218 P A+ + + + +V+ +GP H + L +DGE I++A+ + Y+HR Sbjct: 7 PPEHRYAKIIKERHNEDGSELSVLNLGPTHPATHGIFQNILLMDGERILEAEPTIGYIHR 66 Query: 219 GMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEV 278 EK+AE R Y ++T L+DR+ ++ + ++E +GI+VP+RAQ +R I++E+ Sbjct: 67 AFEKIAENRPFY-QITPLTDRMNYCSSPINNMGWWMTLEKLLGIEVPKRAQYLRVIVMEL 125 Query: 279 ERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLL 338 R+ H++ + TG +GF+ F+ RE ++ E + GAR T + IGG RD Sbjct: 126 ARITDHIICNSILGVDTGAYTGFLYVFQFREKIYEIYEEICGARLTTNMGRIGGFERDWS 185 Query: 339 KDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASG 398 + + + ++ +E ++ RTV +G + E A + GP +RA+G Sbjct: 186 PEAFRKLDKFLEEFPPAWKEFENLFERNRIFLDRTVNVGGITAEKAMAYGFTGPNLRAAG 245 Query: 399 HARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGG-PL 457 D R HP+ Y V + D R VR EV+ +L++I L+ +P G Sbjct: 246 VDYDVRVAHPYSSYEDFDFIVPVGKSGDTYDRFCVRNAEVWESLSIIRQALEKMPAGNEY 305 Query: 458 MVEGFTY---------------------------IPHRFALGFAEAPRGDDIHWSMTGDN 490 E Y +P E G+ + T + Sbjct: 306 HAEVPDYYLPPKEDVYNSMESLIYHFKIVMGEVPVPVSEIYHAVEGGNGELGFYLATDGS 365 Query: 491 QKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 + YR R + + M++G +SDA +I+ SL+ D Sbjct: 366 RTPYRLHFRRPCFIYYQAFPEMIKGALLSDAIIILSSLNVIAGELD 411 >UniRef50_Q67P19 NADH-quinone oxidoreductase subunit D 1 n=1 Tax=Symbiobacterium thermophilum RepID=NUOD1_SYMTH Length = 404 Score = 339 bits (870), Expect = 2e-91, Method: Composition-based stats. Identities = 100/396 (25%), Positives = 174/396 (43%), Gaps = 32/396 (8%) Query: 173 ELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNE 232 E + + IGP H + +L ++GE ++ A+ ++H G+EK AE + +N+ Sbjct: 10 EEQRPERMTLSIGPHHPATHGVLRVKLELEGETVVKAEPETGFLHTGIEKTAE-HLTWNQ 68 Query: 233 VTFLSDRVCGICGFAHSTAYTTSVENAMGIQ--VPERAQMIRAILLEVERLHSHLLNLGL 290 T + DR+ + +++T Y +VE +GI+ +PE+A++ R ILLE+ R+ SHL+ LG Sbjct: 69 ATTVMDRMDYLSPISNNTGYVMAVEKLLGIEDRIPEKARVTRVILLELNRVASHLVGLGT 128 Query: 291 ACHFTG-FDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLA 349 G + F +R+ + + E TG R +GG+ DL + Sbjct: 129 GGLDYGNIGTPIFWAFELRDRILDIFEHTTGQRMNPSYMRVGGLAYDLPHNFKEMVEDFL 188 Query: 350 QQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPF 409 + +QEL DV+L P R G+ + E A + G +R +G D R +P+ Sbjct: 189 KVAPGRIQELKDVMLHNPIFVDRAKGVSVITYEQALRYGLTGRNLRVTGSDYDVRKYYPY 248 Query: 410 VGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTY----- 464 +GY +V D SR+ + +E++ +L +I LDNLP + Sbjct: 249 LGYENYDFKVPVYTDGDSWSRVAITFDEMFESLKIIRQALDNLPWDDRYIIDDRKLVLPP 308 Query: 465 -----------------------IPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAA 501 +P E+PRG+ + ++ K R R R Sbjct: 309 KQEVKHSMEALIHHFKLVHHGFDVPAGEVYVSIESPRGEIGFYVVSDGGNKPMRVRVRPP 368 Query: 502 TYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 ++ +L +L G+ +SD I ++DP + DR Sbjct: 369 SFYAVYSLPVLLEGHLLSDMVGAIATIDPVFGEVDR 404 >UniRef50_A7C1S4 NADH-ubiquinone oxidoreductase subunit n=3 Tax=cellular organisms RepID=A7C1S4_9GAMM Length = 380 Score = 339 bits (869), Expect = 2e-91, Method: Composition-based stats. Identities = 100/380 (26%), Positives = 166/380 (43%), Gaps = 8/380 (2%) Query: 165 AETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLA 224 E + GP H + ++ + G+ ++ Y+HRG EK+ Sbjct: 2 RPENYQPVEHPASHEYELYFGPNHPGIEGNYALKVRLSGDEVVGVKADAGYLHRGFEKIM 61 Query: 225 ETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSH 284 E R+ V L R+C Y +VE G++VPERAQ IR ++LE+ R+ +H Sbjct: 62 EERLWIQNV-ALVPRICVPDPPPMEETYARAVEMLGGLEVPERAQWIRVMMLEMSRIAAH 120 Query: 285 LLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQ 344 L G TG S R+ + + E LTGAR GG+RRD+ + + Sbjct: 121 LFIAGGTSATTGQYSNMFWGIADRDLILDLFEELTGARIYNMFITPGGVRRDIPDGFLDR 180 Query: 345 TRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTR 404 Q+ + + E D+ P +R GIG++ E A + GP +RA G D R Sbjct: 181 LGQVLDFLEARLPEYDDLFFDNPVFHRRAEGIGKMTQEQALAWGVTGPNLRACGLPFDVR 240 Query: 405 ADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPG--GPLMVEGF 462 + P++ Y L ++ +E G DV+ R++VR +E+ + ++ + LP GP+ Sbjct: 241 RNDPYLVYEQLDFDIPTETGGDVLDRIRVRRSEIIESTKILRQVIQRLPHVKGPIRCHLP 300 Query: 463 TY----IPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYAN-WPTLRYMLRGNT 517 +P A EA +G+ ++++ K +R R + + L + G Sbjct: 301 NPLAWNVPEGDAYARTEAQKGELGFYAVSTGGTKPWRVHVRGPSCMHAVQVLEKLCLGAR 360 Query: 518 VSDAPLIIGSLDPCYSCTDR 537 + D +I+ SLD C DR Sbjct: 361 IEDIAMIMFSLDACPPEVDR 380 >UniRef50_A1ALP2 NADH-quinone oxidoreductase subunit D n=1 Tax=Pelobacter propionicus DSM 2379 RepID=NUOD_PELPD Length = 403 Score = 339 bits (869), Expect = 2e-91, Method: Composition-based stats. Identities = 92/404 (22%), Positives = 171/404 (42%), Gaps = 28/404 (6%) Query: 161 PTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGM 220 + + + D + +V +GP H + +DGE + AD Y+HRG Sbjct: 1 MEYKSPVRSNLEQTADPNHVLVNMGPSHPATHGTIQIIAALDGERVAKADIHCGYLHRGF 60 Query: 221 EKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVER 280 EK +E Y+++ +DR+ ++ AY VE +GI++ R +R +L E R Sbjct: 61 EKESE-HHTYHKIIPFTDRLNYCSALNNNFAYVEGVEKLLGIELTPRCIYLRTLLAEYNR 119 Query: 281 LHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKD 340 + H+ + G + F+ +R+ + LTGAR TY +GG++ DL Sbjct: 120 VADHVTCVAATVMEMGAMTAFLYLMTIRDYIFEHLNQLTGARLTYSFARVGGLKNDLPDG 179 Query: 341 DMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHA 400 + + ++ Q + + +L RT +G + PE A ++ GP++R++G Sbjct: 180 WLERLEEILQFTEKYCGRIHGLLDRNRIFIDRTRDVGAMSPEHALNWGYTGPILRSTGAK 239 Query: 401 RDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVE 460 D R D+P++ Y L EV D R VR+ E+ +++M+ + LP GP+ ++ Sbjct: 240 IDIRKDNPYLAYADLDFEVPVGIKGDNYDRYYVRMREIDESISMVRQCMKKLPDGPVNID 299 Query: 461 GFTYI---------------------------PHRFALGFAEAPRGDDIHWSMTGDNQKL 493 + P EAP G+ + ++ + + Sbjct: 300 DRRIMYPTKDKVYTKIEYLISHFKLVIDGIQVPAGEIYVSHEAPNGELGFYLISDGSGRP 359 Query: 494 YRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 Y+ R+ ++A+ + +L G V+D GS++ DR Sbjct: 360 YKLHVRSPSFAHMGGMHTLLEGYQVADVIATFGSMNMIGGECDR 403 >UniRef50_B1VSH7 NADH-quinone oxidoreductase subunit D 2 n=6 Tax=Actinomycetales RepID=NUOD2_STRGG Length = 394 Score = 337 bits (864), Expect = 9e-91, Method: Composition-based stats. Identities = 100/369 (27%), Positives = 175/369 (47%), Gaps = 8/369 (2%) Query: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235 + + V+ IGP H ++ R+ +DGE + A+ + Y+HRG EKL E R Y ++ Sbjct: 27 ESTDMVLNIGPQHPSTHGVLRLRIVLDGERVQHAEPVIGYMHRGAEKLFEAR-DYRQIIM 85 Query: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 295 L++R + F++ +VE +G++VPERA R +L E+ R+ +HL+ LG Sbjct: 86 LANRHDWLSAFSNELGVVMAVERMLGMEVPERAVWTRTLLAELNRVLNHLMFLGSYPLEL 145 Query: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 355 G + FR RE + E ++G R Y N +GG++ D+ + R +R Sbjct: 146 GGITPVFHAFREREELQAVMEEVSGGRMHYMFNRVGGLKEDVPAGWAGRVRDAVASVRSR 205 Query: 356 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415 + +++L RT +G L + GP+ RASG D R D P++ YG L Sbjct: 206 MDVYENLVLGNEIFRGRTRDVGVLSAAAVHAYGVSGPIARASGVDFDLRRDEPYLAYGEL 265 Query: 416 P--MEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPG---GPL--MVEGFTYIPHR 468 ++V + D ++R + + + +L++ D LD + GP+ + P Sbjct: 266 RDTLKVVTRTEGDCLARFECLLEQTLNSLDLADACLDRMAHLAPGPINQRLPKVLKAPEG 325 Query: 469 FALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSL 528 + E P G + ++ ++ + YR + R+A++ N L +L G V+D I+GSL Sbjct: 326 HTYAWTENPLGVNGYYLVSKGEKTPYRLKLRSASFNNIQALTELLPGTLVADMVAILGSL 385 Query: 529 DPCYSCTDR 537 D+ Sbjct: 386 FFVVGDIDK 394 >UniRef50_A7H9V5 NADH-quinone oxidoreductase subunit D 2 n=8 Tax=Myxococcales RepID=NUOD2_ANADF Length = 431 Score = 336 bits (861), Expect = 2e-90, Method: Composition-based stats. Identities = 86/409 (21%), Positives = 154/409 (37%), Gaps = 28/409 (6%) Query: 155 YRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLF 214 R ++ K V +GP H + +DGE I + Sbjct: 23 EPPRALGQAGLAAENELDAPLASKLMTVNLGPSHPAMHGVTRAVVELDGEMIRSMKLDIG 82 Query: 215 YVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAI 274 ++HRG EK E + +DR+ + ++ + +VE + VPERA+ +R + Sbjct: 83 FLHRGFEKSCENVTW-TQCFPYTDRLNYVSSIMNNVGFALAVEKLCKLDVPERAKYLRVV 141 Query: 275 LLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIR 334 E+ R+ HL +G G + F+ R+ L GAR T IGG+ Sbjct: 142 TSEIHRICDHLTLVGAMAMELGAMTVFLYAIEARDIIYDRLAELCGARLTSNYGRIGGVA 201 Query: 335 RDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMV 394 RD + +T + +++ V E+ ++ RT G G + A + GP + Sbjct: 202 RDTPDGWIEKTEKTLDRVKGYVDEIDQLVSRNRIFIDRTRGTGVVPRADAIELGFTGPCL 261 Query: 395 RASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPG 454 RASG D R P++ Y + ++ D R ++R+ E+ + +I + Sbjct: 262 RASGEPYDLRKAAPYLVYDRIDFDIPVGTNGDNFDRFQMRMEEMRQSDRIIRQCFAQMEP 321 Query: 455 GPLMVEGFTY---------------------------IPHRFALGFAEAPRGDDIHWSMT 487 G + V+ F Y +P A G+ EA G+ + ++ Sbjct: 322 GEIAVQDFRYVLPPKPLVYGTIEGLMAHFKIIMEGIQVPAGEAYGYTEAANGELGFYVVS 381 Query: 488 GDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 + Y+ RA + L +M G+ +SD S++ + Sbjct: 382 DGGGRPYKLGLRAPGWPMLAALPFMSVGSLLSDLIPTFDSINMIGGEVE 430 >UniRef50_A1RZ50 NADH dehydrogenase (Ubiquinone) n=6 Tax=Archaea RepID=A1RZ50_THEPD Length = 404 Score = 335 bits (859), Expect = 3e-90, Method: Composition-based stats. Identities = 115/391 (29%), Positives = 182/391 (46%), Gaps = 28/391 (7%) Query: 173 ELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNE 232 GD+ + IGP H +S F + + G+ I+ D + YVHR MEKLAE R + Sbjct: 16 REGDESVYELFIGPQHPSS-GHMRFIVRLQGDVIVSVDPDIGYVHRTMEKLAEGREAI-K 73 Query: 233 VTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLAC 292 L +R+ I + T++E + ++ P RA +R +L E+ R+ SHL +G+A Sbjct: 74 AIPLLERLTIIDSHNATVGLVTAMERLLDVEPPPRALYLRTLLSEINRIASHLYGMGIAG 133 Query: 293 HFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQM 352 + FM F RE +++AE LTGAR T+ ++ GG+RRDL + + + A+ M Sbjct: 134 IMLNHSTMFMWAFGDREVWLQLAEELTGARLTHTYSVPGGVRRDLPQGFGEKFEKAARYM 193 Query: 353 RREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGY 412 R +Q+ + + L P + R G+G L A VGP +RASG D R + Y Sbjct: 194 ERRLQDYMRIFLENPQVVARYEGVGVLKKSEASRLGVVGPNLRASGVKYDARLADDYGAY 253 Query: 413 GLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGF---------- 462 L EV + + D ++R+ VR+ E+ ++++I L +P GP++ E + Sbjct: 254 KDLEFEVPTREEGDCMARMLVRVEEIKQSISIIRQVLRKMPDGPILSEKYLKLLPPKTRE 313 Query: 463 ----------------TYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANW 506 +P A+ AE G+ + + K YR R ++ N Sbjct: 314 RVLQEGRVKFPALFASLKLPAGEAVARAEMGHGEIFYHITGDGSAKPYRLRVVTPSFRNV 373 Query: 507 PTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 RY+ G+ D P I GSLD DR Sbjct: 374 ILFRYLAPGHRFMDFPAIYGSLDYFPPEADR 404 >UniRef50_Q3JMD7 Hydrogenase subunit n=33 Tax=Burkholderia RepID=Q3JMD7_BURP1 Length = 567 Score = 335 bits (858), Expect = 4e-90, Method: Composition-based stats. Identities = 150/571 (26%), Positives = 235/571 (41%), Gaps = 68/571 (11%) Query: 23 LDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVLFGNDERKLNGHYAVYYVLSMEK 82 + A + +V + E + GG L L+G + G Y V ++ Sbjct: 7 IASAAGQPRAVFASVDADAWTRAAETIR-TAGGRLVTLWGGE--PAAGRYEVCAAYELDD 63 Query: 83 GTKCWITVRVEVDA------------------------------NKPEYPSVTPRVPAAV 112 G + +R+ V+ YP ++ +A Sbjct: 64 G---LLWLRLPVEPAANVGREAGDTSNAGNASNAGDADGVRQRGEAGSYPDLSAIFASAT 120 Query: 113 WGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFIN 172 +R + D+ GL G D R + WP + +PLR+ + + T D Sbjct: 121 RMQRALHDLVGLRARGAHDTRPWLAHGAWPRDYHPLRRRATGGERFEYATADYPFVP--- 177 Query: 173 ELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNE 232 + + + +GP+H EPGHFR V GE ++ + RL Y HRG+E+L E R Sbjct: 178 -VAGDGVHEIAVGPIHAGVIEPGHFRFSVVGEKVLRLEERLGYAHRGVERLFE-RADALA 235 Query: 233 VTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLAC 292 + L+ R+ G A + AY ++E A+ I+VP+RA +RA+LLE ER+ +HL +LG Sbjct: 236 GSRLAARIAGDSTVAFAWAYCMALEQALRIRVPDRALRLRALLLERERVANHLGDLGALG 295 Query: 293 HFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQM 352 + GF G F R++E ++M + + G R + GG+ RD+ DD ++ Sbjct: 296 NDAGFAVGLAHFSRLKEDWLRMQDRIFGHRYLMDAIVPGGVARDIAADDAAAIVAQCDRI 355 Query: 353 RREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGY 412 REV+ + + ++ R G GRLD + F G RASG RD RADH Y Sbjct: 356 EREVRAMQTIYDDQSGLQDRFAGTGRLDAQAVAHFGVCGLAARASGQPRDVRADHRLAPY 415 Query: 413 GLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYI------- 465 L ++V + DV +R+ VR E Y ++ I L +LP L E Sbjct: 416 DALRIDVSRDARGDVAARVAVRFAETYESMRAIRALLADLPDDGLAAEIAPGATVPGARA 475 Query: 466 --------------------PHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYAN 505 R +G+ E RG + R C ++ N Sbjct: 476 DAGGACEGEEGGDAAFCPGDARRRGIGWIEGWRGPVFVALELDARGAVARCHCHDPSWHN 535 Query: 506 WPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 WP L + + GN V+D PLI S + Y+ D Sbjct: 536 WPALEHAIIGNIVADFPLINKSFNLNYAGHD 566 >UniRef50_A6DAC0 Carbon monoxide-induced hydrogenase, large subunit n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DAC0_9PROT Length = 358 Score = 333 bits (855), Expect = 8e-90, Method: Composition-based stats. Identities = 117/360 (32%), Positives = 183/360 (50%), Gaps = 3/360 (0%) Query: 179 NNVVPIGPLHVTSDEPGHFRLFVDG-ENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLS 237 + IGP + +EP +F+L VD E + D + +VHRG+E L + + + L+ Sbjct: 1 MKKINIGPFLASLEEPIYFKLDVDDNEIVRDVEIVNGFVHRGLEALTMQKNFFQNLI-LT 59 Query: 238 DRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGF 297 +R+C +C H +Y ++E I+V +RA +R I EV+R+ S++ NL + H Sbjct: 60 ERLCALCSNNHPFSYCLALEKIAEIEVSKRADYLRVIADEVKRIASNMFNLSMLAHLVHD 119 Query: 298 DSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQ 357 RE + E + G R IGG++ +L K +++ V Sbjct: 120 YELMRDTMDTREIMQDVKETIWGNRMDLSAVTIGGVKYNLDKQKSEFILNSLEKIEPLVD 179 Query: 358 ELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPM 417 +L + ++ +++ T GIG L + A +F GP+ R SG D R P+ Y L + Sbjct: 180 KLFERFCNSEKIKK-TKGIGVLTKQQALEFGVSGPVARGSGINNDVRVKAPYAAYDELEV 238 Query: 418 EVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAP 477 V E DV SR+KVR ++ A+ ++ ++NLP GP+ +E +IP A EAP Sbjct: 239 RVDLESDGDVYSRMKVRWYDIKNAIKILKNAINNLPSGPIHLEKRPHIPAGEATVRTEAP 298 Query: 478 RGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 RG+ I++ T QK R R R TY N+ L M++GN SD LI+ S+DPC SCTDR Sbjct: 299 RGELIYYVKTDGGQKPKRMRWRVPTYMNFQALEEMIKGNRASDVVLILNSIDPCVSCTDR 358 >UniRef50_B3T914 Putative Respiratory-chain NADH dehydrogenase, 49 Kd subunit n=2 Tax=environmental samples RepID=B3T914_9ARCH Length = 384 Score = 332 bits (852), Expect = 2e-89, Method: Composition-based stats. Identities = 93/365 (25%), Positives = 153/365 (41%), Gaps = 5/365 (1%) Query: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235 D + + +GP H S L VDG+ I+ D YVHRG EK+AE R + Sbjct: 22 DDRIMTLNVGPQHPGS-GHMRIILKVDGDYIVHCDPDPGYVHRGEEKMAEYRNYITNIPH 80 Query: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 295 L +R Y VE +G++VPERA+ IR I E+ R L + F Sbjct: 81 L-ERPVIHDSCNILYPYCLGVEELLGLEVPERAKYIRVIAAELNRCVYTQYWLAIYGIFL 139 Query: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 355 G + FM RE + + + +TGAR T+ + GG+R D+ + + + Sbjct: 140 GHSTMFMWPMGDRELVIDLLDKMTGARVTHSYFVPGGVRNDIPPNFEDVCLRQVNYFEKR 199 Query: 356 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415 ++E D+ P + RT G L E A G ++RASG D R P+ Y L Sbjct: 200 LKEYADMFYDNPILISRTKDTGILSREDAIKLGTTGSVLRASGVDFDIRKKEPYDVYEEL 259 Query: 416 PMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPG-GPLMVEGFTYIPHR--FALG 472 + + + D +R K+ +++ + +I L +P G + V+ Sbjct: 260 DFQTNVLKEGDSYARSKIPWLDMFESCRIIRDALKKMPKSGSVRVKLKPNPKGGDTEVYR 319 Query: 473 FAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCY 532 E+ RG ++ + YR + ++ N + ++L G + + P + SL+ Sbjct: 320 RVESGRGSLGMHIISRGKPQPYRLKISVGSFRNLIAMPHLLTGEMLGNMPAVYWSLNYWP 379 Query: 533 SCTDR 537 DR Sbjct: 380 VEADR 384 >UniRef50_B3TC54 Putative Respiratory-chain NADH dehydrogenase, 49 Kd subunit n=1 Tax=uncultured marine microorganism HF4000_APKG10H11 RepID=B3TC54_9ZZZZ Length = 363 Score = 332 bits (851), Expect = 2e-89, Method: Composition-based stats. Identities = 96/359 (26%), Positives = 165/359 (45%), Gaps = 4/359 (1%) Query: 181 VVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 240 + GP H + + +DG+ + A+ + Y HRG+EKL E R + + +R Sbjct: 7 TLNWGPQHPVT-GHFRMIMTIDGDLCVGAEPTIGYTHRGIEKLLENRQFLVGIPMI-ERF 64 Query: 241 CGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG 300 S +YT +VE+ M + P RAQ +R I+ E+ RL SHL NL L G + Sbjct: 65 NMTDTAPMSLSYTKAVESLMDFEAPPRAQYLRTIISEICRLSSHLYNLALYTVALGMYTP 124 Query: 301 FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREV-QEL 359 FM RE +K+ EIL+G R Y + GG+ +D+ D Q + + R + ++ Sbjct: 125 FMWAIGDREHFLKLGEILSGVRLAYNYPIPGGVYKDMPPDFPHQATKTIKYFRNRLLKDY 184 Query: 360 VDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEV 419 + T ++ R +G + E A + GP++RASG +D R P+ Y + +V Sbjct: 185 KKFIYDTTAVKSRGEDVGIMSKEEALKWGVTGPVLRASGVKKDMRKVEPYGAYNEVDFDV 244 Query: 420 HSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRG 479 ++ D +R+ VR E+ +LN+++ + ++P G + +P EA RG Sbjct: 245 ITKNEGDSHARMLVRYEEMEQSLNILEQCIKDIPAGDYFTKVRPAVPAGETFTRVEAARG 304 Query: 480 DDIHWSMTGDN-QKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + + + YR + ++ N L + G+ ++D I S+D DR Sbjct: 305 EVGVYLFNKETRNMPYRTKFSNPSFKNGYVLPKLFVGSVIADCAAIYHSIDVWALEMDR 363 >UniRef50_Q57935 Uncharacterized protein MJ0515 n=17 Tax=Euryarchaeota RepID=Y515_METJA Length = 380 Score = 332 bits (851), Expect = 3e-89, Method: Composition-based stats. Identities = 111/375 (29%), Positives = 183/375 (48%), Gaps = 5/375 (1%) Query: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235 + +PIGP+H EP +L +DGE +DA+ + YVHRG+EK+ E + ++ Sbjct: 2 SENMATIPIGPIHPVLKEPLRIKLVLDGEKPVDAEIEMGYVHRGIEKIMEGKHC-HKGIH 60 Query: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 295 L++RVCGIC + H+ + +E+ I++P++A+ +R + E+ER+HSHL+ + Sbjct: 61 LAERVCGICSYVHTMTFAECIEHISKIEIPDKAKYLRVVTCELERIHSHLIASAVYNLSI 120 Query: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 355 ++ M VRE M + E++TG R G N+IGG+RRD+ ++ M + + E Sbjct: 121 EHETLAMWLLNVREIIMDLMEMITGNRVNMGYNVIGGVRRDINREMMDEIYKKLDIFEDE 180 Query: 356 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHAR-DTRADHPFVGYGL 414 ++ +++V + P + R+ IG L VGP+ R SG D R H Y Sbjct: 181 LKNIIEVFETGPLIALRSKEIGILPYHEVMRTRAVGPICRGSGLPESDWRLRHST--YQE 238 Query: 415 LPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFA 474 L + + D +R+ VR E+ ++ +I L++ + I Sbjct: 239 LKFKPVWREEGDNFARMMVRHEEIIESVRLIREALEHYEECSGDIRVKAEIKGGKGEWRN 298 Query: 475 EAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNT-VSDAPLIIGSLDPCYS 533 EAPRG+ + D + R R T N +YML+ V+DA S+DPC S Sbjct: 299 EAPRGEVTYRMEITDGGIIKRIMIRTPTVMNLEAYKYMLKTCPTVADAVSAYTSIDPCVS 358 Query: 534 CTDRMTVVDVRKKKS 548 CT+R V K+ Sbjct: 359 CTERCIVAVKDGKEI 373 >UniRef50_C6X0Z4 NADH-ubiquinone oxidoreductase chain D n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6X0Z4_FLAB3 Length = 420 Score = 331 bits (848), Expect = 6e-89, Method: Composition-based stats. Identities = 89/397 (22%), Positives = 161/397 (40%), Gaps = 28/397 (7%) Query: 167 TYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAET 226 + D + + +GP H + L +DGE I+ ++ + Y+HR EK++E Sbjct: 24 NQHDAKDQIDGQLYTLNLGPTHPATHGIFQNVLTMDGERILHSEQTIGYIHRAYEKISE- 82 Query: 227 RMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLL 286 R + ++T L+DR+ ++ + +VE +G +VP+R +R I++E+ R+ H++ Sbjct: 83 RRNFTQITTLTDRMNYCSAPINNIGWHLTVEKLIGCEVPKRVDYMRVIMMELARIADHMV 142 Query: 287 NLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTR 346 G+ G +G F+ RE +M E + GAR T + IGG RD + Sbjct: 143 CNGVIAMDAGAITGLTYLFQEREKIYEMYEQVCGARMTTNMGRIGGFERDFNDKFHELLQ 202 Query: 347 QLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRAD 406 ++ + E + RT+ +G + E A + GP +RA+G D R Sbjct: 203 TWLKRFPKIWSEFCALNERNRIFMDRTINVGPISAERALSYGFTGPNLRAAGVDYDVRVA 262 Query: 407 HPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTY-- 464 P+ Y + D R VR EV+ +L +I+ NLP GP + + Sbjct: 263 SPYSSYNDFDFIIPVGSAGDTYDRFMVRQQEVWESLKIINQAYKNLPDGPFHADVPEFYL 322 Query: 465 -------------------------IPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCR 499 +P E G+ + ++ + YR R Sbjct: 323 PEKADVYNNMEALIYHFKIVMGETDVPIGEVYNCVEGGNGELGFYLVSDGGRTPYRLHFR 382 Query: 500 AATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 + + M++G +SDA + + S++ D Sbjct: 383 RPCFIYYQAYPEMIKGGMISDAVVTMCSMNVIAGELD 419 >UniRef50_C1AB36 NADH-quinone oxidoreductase chain D n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AB36_GEMAT Length = 412 Score = 330 bits (846), Expect = 9e-89, Method: Composition-based stats. Identities = 91/412 (22%), Positives = 157/412 (38%), Gaps = 28/412 (6%) Query: 153 MDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYR 212 A VV IGP H + +DGE ++ D Sbjct: 2 PLSANPVILPPIANPVRAAFGPSRDDTVVVNIGPSHPATHGTVQIIAELDGEKVLRTDVH 61 Query: 213 LFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIR 272 Y+HRG EK E + + DR+ ++ AY VE MGI++ R + +R Sbjct: 62 CGYLHRGFEKECEDHTW-HNLIPYVDRLNYCSALINNFAYCDGVEQLMGIEITPRTKYLR 120 Query: 273 AILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGG 332 +L E RL HL + + G + F+ VR++ + LTGAR TY IGG Sbjct: 121 TLLSEYSRLADHLTCVAASLMELGAMTAFLYLVTVRDSMYEHLAALTGARVTYSYGRIGG 180 Query: 333 IRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGP 392 + D+ + ++ + + + + ++ R +G ++ A + GP Sbjct: 181 LAADVPDGWFKRLGEILRDYEQYAERVHGLVDRNRIFIDRLRNVGTINTADALHWGFTGP 240 Query: 393 MVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNL 452 ++R++G RD R D P++ Y L +V D R VR+ E+ ++ MI +D + Sbjct: 241 VLRSTGAKRDLRKDTPYLAYAELDFDVPVGIFGDNYDRYYVRMREMDESVYMIRQLMDMI 300 Query: 453 PGGPLMVEGF---------------------------TYIPHRFALGFAEAPRGDDIHWS 485 P GP+ V+ +P A E G+ + Sbjct: 301 PDGPINVDDRRCVFPEKQLVYSEIESLINHFKLVMEGPAVPAGDAYVAHEGANGELGFYI 360 Query: 486 MTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 ++ Y+ R+ ++ + ML G ++D GS++ DR Sbjct: 361 VSTGEGVPYKVHVRSPSFVHMGGAHRMLDGYQLADIVTSFGSINMIGGECDR 412 >UniRef50_C2BU22 NADH dehydrogenase (Quinone) n=4 Tax=cellular organisms RepID=C2BU22_9ACTO Length = 457 Score = 330 bits (846), Expect = 1e-88, Method: Composition-based stats. Identities = 106/438 (24%), Positives = 170/438 (38%), Gaps = 49/438 (11%) Query: 148 LRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENII 207 + + E V +GP+H ++ + ++GE + Sbjct: 21 ASDSVAGMPEFSVHDGEWSAMSADLESAHNDRIAVNLGPVHPSTHGVLRVIVELEGETVK 80 Query: 208 DADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQ--VP 265 D Y+H G+EK E R YN+ R+ + F A+ +VE A+G+ VP Sbjct: 81 DCRLGTGYLHTGIEKSMEYRT-YNQGVAYCSRMDYVAPFFSEVAWCLAVEKALGVTDQVP 139 Query: 266 ERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTY 325 RA IR +L+E+ R+ SHL+ +G + G + FR RE +++ E +TG R Sbjct: 140 RRASEIRVLLMELNRIASHLVAVGTGANELGATTMLTTGFRGREEILRIFEHITGLRMNN 199 Query: 326 GLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIAR 385 GG+ DLL D + R+ ++R++ E+ D++++ P R +G L Sbjct: 200 TYMRPGGVSNDLLDDTIDMIREKLPLVKRDIGEMQDLIMANPIFIGRMKNVGWLPLSTMM 259 Query: 386 DFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMI 445 S GP +RA G D R P+ GY +V + D +R +VR E+Y +L ++ Sbjct: 260 ALSLTGPCLRAGGLPLDMRKLQPYCGYEAYTFDVPTRDHSDCYTRTEVRFEEMYQSLRIV 319 Query: 446 DYGLDNLPGG---PLMVEGFT--------------------------------------- 463 LD L P+M+ Sbjct: 320 YQVLDRLEQSEGEPVMIADPKFAYPSKLTIGADGQGQDPEHVSHILGHSMEELIHHFKLV 379 Query: 464 ----YIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVS 519 IP E +G +T YR R +YAN + M G +S Sbjct: 380 TEGFRIPPGQVYAQVEHAKGIQGVHLVTDGGTHPYRAHFRDPSYANLQSASMMCEGGLIS 439 Query: 520 DAPLIIGSLDPCYSCTDR 537 D + IGS+DP + DR Sbjct: 440 DLVVSIGSIDPVFGGVDR 457 >UniRef50_Q21TB4 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21TB4_RHOFD Length = 498 Score = 328 bits (842), Expect = 3e-88, Method: Composition-based stats. Identities = 117/508 (23%), Positives = 204/508 (40%), Gaps = 33/508 (6%) Query: 37 VKVNYLPEVVEFL--YYKQGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEV 94 + L E+++ + G L LFG +L + V + ++ + +R Sbjct: 15 IAATSLQELMQLCGQRLQAGERLLTLFGRPAPELGVNIIVVTAV-LQPAQGALVILRATA 73 Query: 95 DANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMD 154 + Y +T + PAA ERE+ + GL P P + + + Sbjct: 74 QRGE-HYRCLTAQHPAAQIFERELWEQTGLFPDDHPWLKPVRFEGE-------------- 118 Query: 155 YRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLF 214 ++ ++ + V +GP+H + EPGHFR GEN+ + +L Sbjct: 119 -------RQQRMLEYPFFKVRGQEVHEVGVGPIHASVIEPGHFRFMCLGENVHHLEIQLG 171 Query: 215 YVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAI 274 Y HRG+E L R + ++T L + +CG A++ Y ++E V Q RAI Sbjct: 172 YQHRGVEGLLLRRPVW-QLTPLVESICGDSAVAYAWGYGAALELMSNQPVAPAIQASRAI 230 Query: 275 LLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIR 334 LE+ER+ HL LG F G + R+R + ++ + G R G G Sbjct: 231 ALEMERIAMHLATLGGMATDIAFLQGGATYGRLRTAIINASQRVCGNRFGRGWIRPGQ-A 289 Query: 335 RDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMV 394 + L + + + + ++ ++L+ +++ R G G + + A D GP+ Sbjct: 290 KPLSEALQQDLTRTLRAFAPDFTQINQLMLAARSVQARLHGTGTVSQQAALDLGLTGPVA 349 Query: 395 RASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPG 454 RASG A D R P YG P+ + +E D +R+++R+ EV +L + L + Sbjct: 350 RASGVALDHRTQWPGAAYGHAPLPMVTEPDGDCWARMRLRMREVDASLAWLLQLLGDTTL 409 Query: 455 GPLMV------EGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPT 508 + E RG + T +L ++ + + ANW Sbjct: 410 NLSQAGQAQSSTPAALQAEALCVSLVEGTRGPVLQVLETSAKGELRHYKVQDPSTANWFG 469 Query: 509 LRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 L + +R N +SD P+ S D Y D Sbjct: 470 LAFAMRDNAISDFPICNKSFDLSYCGND 497 >UniRef50_A9A347 NADH dehydrogenase (Quinone) n=3 Tax=Thaumarchaeota RepID=A9A347_NITMS Length = 378 Score = 328 bits (842), Expect = 3e-88, Method: Composition-based stats. Identities = 95/380 (25%), Positives = 155/380 (40%), Gaps = 6/380 (1%) Query: 162 TTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGME 221 TD + D++ + +GP H S + +DG+ I+ D YVHRG E Sbjct: 1 MTDIMPPGLALKKVDERIMTLNVGPQHPGS-GHMRIVVQIDGDYIVACDPDPGYVHRGEE 59 Query: 222 KLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERL 281 K+AE R V L +R Y E +GI+VPERA+ +R I E+ R Sbjct: 60 KMAEYRNYITNVPHL-ERPVIHDSCNVLYPYVLGAEEILGIEVPERAKYVRVICSELNRC 118 Query: 282 HSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDD 341 + L + F G + FM RE + + E ++GAR T+ + GG+R DL + Sbjct: 119 IYTMYWLAIYGIFLGHSTMFMWPAGDRELLIDLMEKVSGARVTHAHFIPGGVRNDLPANF 178 Query: 342 MIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHAR 401 + + ++E V P + RT G L E A + G ++RASG Sbjct: 179 EDVCLRQVNYFEKRIKEYAAVFYDNPILISRTQDTGVLSRENAIRYGTTGSVLRASGVDY 238 Query: 402 DTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEG 461 D R P+ Y L + + + D +R KV ++ + N+I L +P + Sbjct: 239 DLRVKAPYDVYDELDVHTNVLKEGDSYARSKVPWLDMMESCNIIRQALQKMPKSGSVRTK 298 Query: 462 FTYIPHRFA----LGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNT 517 P E+ RG + ++ + YR + ++ N + +L G Sbjct: 299 LKPNPKTKGPATVYKRVESGRGSLGCYIVSDGKTEPYRVKMSVPSFRNLLAMPNLLIGEK 358 Query: 518 VSDAPLIIGSLDPCYSCTDR 537 + + P + SL+ DR Sbjct: 359 LGNMPSVYWSLNYWPVEADR 378 >UniRef50_C7DI97 NADH dehydrogenase (Quinone) n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DI97_9EURY Length = 387 Score = 328 bits (841), Expect = 3e-88, Method: Composition-based stats. Identities = 105/373 (28%), Positives = 182/373 (48%), Gaps = 10/373 (2%) Query: 172 NELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYN 231 + + + +GP+H ++ + VDG+ I + + ++HRG+EKL E RM Y Sbjct: 18 QKSENMPVMRINVGPIHPSTHGVLRLLVDVDGDTIENMTCHIGFLHRGVEKLMENRM-YM 76 Query: 232 EVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLA 291 + ++++ + Y +VE A+ +V E A+ R I++E +R+ SHL +G Sbjct: 77 QSPSYTEKLDYVAPLGWDDLYVHTVELALQKEVKETAKYARVIIMEFQRIASHLFFIGAL 136 Query: 292 CHFTG-FDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQ 350 C+ G + FM FR R+ +K E ++G+R Y +GG+ R L D + +L + Sbjct: 137 CNDIGQMFTMFMWAFRERDAVLKFLEDISGSRMFYVNMRVGGLMRPLPDDFYDRAYKLTE 196 Query: 351 QMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFV 410 + +V+ DV+ +RT GIG + + A DF GP +RASG D R ++P+ Sbjct: 197 YIEYKVKGYKDVIDDNSIFMERTKGIGTISKKEAIDFGLSGPNLRASGVEYDVRKEYPYY 256 Query: 411 GYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGG------PLMVEGFTY 464 Y L +V + D +R K+R E++ ++ +I LD +P P+ + G Sbjct: 257 AYDRLKFKVPTSNAGDGYARYKMRYEEIFESIKIIRQALDKMPRDNDVVGLPIKLIGPEA 316 Query: 465 IPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLI 524 P + E PRG+ I + + QK YR R R+ + + L ++ +G +D I Sbjct: 317 KPD-IVINHHELPRGEGIIYMVPDK-QKPYRIRLRSPVFISLSALEHICKGAKFADLFSI 374 Query: 525 IGSLDPCYSCTDR 537 G+LD + DR Sbjct: 375 AGTLDVVMAEVDR 387 >UniRef50_B3ES55 NADH-quinone oxidoreductase subunit D n=19 Tax=Bacteroidetes/Chlorobi group RepID=NUOD_AMOA5 Length = 403 Score = 327 bits (839), Expect = 5e-88, Method: Composition-based stats. Identities = 95/399 (23%), Positives = 170/399 (42%), Gaps = 18/399 (4%) Query: 156 RQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFY 215 + + + ++ + ++ IGP H + + +DGE ++D L Y Sbjct: 6 QYQGGNFKNTAPTKYQPTDLKVEEVLINIGPQHPATHGILRLEVILDGEIVVDVVPHLGY 65 Query: 216 VHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQ--VPERAQMIRA 273 +HR EK A T + YN+ DR+ + A+ VE+ +G+ +P R + IR Sbjct: 66 LHRCFEKHAAT-LPYNQTIPFVDRLDYLAAMNSEHAFAMGVEHMLGLTGKLPRRVEYIRV 124 Query: 274 ILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGI 333 ++ E+ RL SH + +G G + F+ R RE +++ E +GAR Y IGG+ Sbjct: 125 LMAELNRLASHFMAIGTYGIDLGAFTSFLWLMRDREYILRLFEWASGARMLYNYIWIGGL 184 Query: 334 RRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPM 393 DL + + ++ +++E+ +L+ +RT +G L A + GP+ Sbjct: 185 YYDLPVGFEERCLEFITYLKPKLEEINQLLIDNTLFIKRTANVGVLPLATAINHGVSGPI 244 Query: 394 VRASGHARDTRADHPFVGYGLLPMEVHSEQG-----CDVISRLKVRINEVYTALNMIDYG 448 +RASG D R + Y L ++ +G D R V+ E ++ + + Sbjct: 245 LRASGLRLDLRRIDGYSIYPELSFDIPIGEGLMGHVGDCWDRTWVKFQECKESIKITEQC 304 Query: 449 LDNLPGG---------PLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQ-KLYRWRC 498 L L MV + AE PRG+ + DN K R + Sbjct: 305 LVRLTSDLKRTADFNPQKMVPKKVRTKAQDCYIRAENPRGELGFFFRASDNGDKPIRCKA 364 Query: 499 RAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 R+++++N + + +G ++D IIGS+D DR Sbjct: 365 RSSSFSNLSVISSIAKGQVLADLIAIIGSIDIVLGEIDR 403 >UniRef50_Q8TY43 Ni,Fe-hydrogenase III large subunit n=1 Tax=Methanopyrus kandleri RepID=Q8TY43_METKA Length = 409 Score = 327 bits (839), Expect = 6e-88, Method: Composition-based stats. Identities = 108/395 (27%), Positives = 185/395 (46%), Gaps = 7/395 (1%) Query: 156 RQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFY 215 R+R ++ + + + ++ VP+GP H EP +L V GE ++D + Y Sbjct: 3 RRRREIQSNVQVVDVETGEIEPISHRVPVGPNHPILKEPLRIKLAVRGEEVVDCKVEMGY 62 Query: 216 VHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAIL 275 HRG+EK+ E M + + FL++RVCGIC AH+ + VE R +R ++ Sbjct: 63 CHRGIEKIMEG-MPWQKAAFLAERVCGICSHAHNMCFIGGVEKLAEGDPAPRGLFLRVLV 121 Query: 276 LEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRR 335 E++R+ SHL+ + ++ F+ RE + E +TG R G N++GG+R Sbjct: 122 QELDRIQSHLIANAAYFYSIEHETMFVWNMNTRERVLDCIEEITGNRILTGWNVVGGVRM 181 Query: 336 DLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVR 395 D+ +D + + +R +V + + P ++ R+ G+G + + R + VGP R Sbjct: 182 DVTEDQLNNVLETLDAIRDDVITYRRIAKNDPFIKLRSRGVGVITKDHIRKYRVVGPQAR 241 Query: 396 ASGHAR-DTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPG 454 ASG D R P Y L + + D ++R+ VR +E ++ +I+ +D LP Sbjct: 242 ASGVPESDMRLQEP--VYPELGFKPVYRKEGDNLARILVRYDECLQSIELIERIVDELPE 299 Query: 455 GPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLR 514 G E + EAPRG+ ++ + R R + N L + Sbjct: 300 GRHRREL--EVNAGHVDNRVEAPRGELVYDMELAPGGVVKRVTIRTPSVPNIRVLEAIAP 357 Query: 515 GNT-VSDAPLIIGSLDPCYSCTDRMTVVDVRKKKS 548 G+ ++DA SLDPC +C +R V+D R+ K Sbjct: 358 GSPSIADAVATYASLDPCVACNERFVVIDEREGKV 392 >UniRef50_Q58433 Uncharacterized protein MJ1027 n=12 Tax=Methanococcales RepID=Y1027_METJA Length = 377 Score = 326 bits (835), Expect = 2e-87, Method: Composition-based stats. Identities = 121/369 (32%), Positives = 188/369 (50%), Gaps = 5/369 (1%) Query: 181 VVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 240 + IGP+H T EP RLF++ E I +A+ + +RG+E + E + +++ LS+++ Sbjct: 9 EIAIGPVHPTMLEPHRLRLFIEDEIIKEAELVIGVNYRGIELIMEG-LPPEKISILSEKI 67 Query: 241 CGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG 300 CGIC H T E I+VPERA+ IRAI+ E+ERLHSH+L G A GF++ Sbjct: 68 CGICSHIHVWCNVTVTERGCDIEVPERAEYIRAIVEELERLHSHMLLFGHAFEVLGFETM 127 Query: 301 FMQFFRVRETSMKMAEILTGARKTYGLNLIGGI--RRDLLKDDMIQTRQLAQQMRREVQE 358 + F +RE M++ +TG R Y +IGGI R ++ + + + ++ +++ Sbjct: 128 AFRAFMIREPIMQILGEITGGRAQYSCPIIGGIRPRCNIKESKIPALLERLEKFEENLKK 187 Query: 359 LVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPME 418 L++ ++ P + R +G LD + A+ +GP R SG D R Y E Sbjct: 188 LLERTVNDPMIMSRIKDVGVLDKKTAKKLHALGPTARGSGIHSDMRKMGQVPVYDNFEFE 247 Query: 419 VHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFAL--GFAEA 476 DV SRL VR E + ++ +I GL +LP + Y F + EA Sbjct: 248 EIVFDDGDVFSRLAVRFYECFESVKIIRQGLKDLPNLDKRIYNPNYELKEFKPIDVYNEA 307 Query: 477 PRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 RG + +N ++ + + R T N + +L G+ VSDA LII S DPC++CTD Sbjct: 308 QRGQVYYSYGLDENGRVRQVKIRTPTATNLACMEAILPGHHVSDAELIIASCDPCFTCTD 367 Query: 537 RMTVVDVRK 545 RM VV K Sbjct: 368 RMIVVKENK 376 >UniRef50_A4XCQ7 NADH-quinone oxidoreductase subunit D 2 n=22 Tax=Actinomycetales RepID=NUOD2_SALTO Length = 388 Score = 324 bits (830), Expect = 7e-87, Method: Composition-based stats. Identities = 108/364 (29%), Positives = 180/364 (49%), Gaps = 5/364 (1%) Query: 178 KNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLS 237 + V+ IGP H ++ RL +DGE ++ A+ + Y+HRG EKL E R Y ++ L+ Sbjct: 26 TDMVLNIGPQHPSTHGVLRLRLVLDGERVVSAEPVVGYMHRGAEKLFEVR-DYRQIIVLA 84 Query: 238 DRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGF 297 +R + FA+ +VE +G++VPERA +R L E+ R+ +HL+ LG G Sbjct: 85 NRHDWLSAFANELGVVLAVERLLGMEVPERATWLRMALAELNRVLNHLMFLGSYPLEIGA 144 Query: 298 DSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQ 357 + FR RET E ++G R Y N +GG++ ++ + R ++RR + Sbjct: 145 ITPMFYAFRERETLQTALEEVSGGRIHYMFNRVGGLKEEVPAGWTGRARAAIGEVRRSLP 204 Query: 358 ELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPM 417 +L +++ RTVG+G L A + GP+ RASG D R D P++ Y L + Sbjct: 205 DLDNLIRRNEIFLARTVGVGVLSAAQAAAYGASGPVARASGLDLDLRRDEPYLAYDQLDV 264 Query: 418 EVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLP--GGPLMVEGFT--YIPHRFALGF 473 V + D SR +V +++VY +L++ + LD + GP+ P + Sbjct: 265 PVVTRTAGDCHSRFEVLLDQVYVSLDLAEQCLDRVDRLTGPINTRLPKVLKAPEGHTYAW 324 Query: 474 AEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYS 533 E P G + ++ ++ + +R + R A+YAN L +L G V D I+GS+ Sbjct: 325 TENPLGINGYYLVSRGEKTPWRLKLRTASYANVQALATLLPGCLVPDLVAILGSMFFVVG 384 Query: 534 CTDR 537 D+ Sbjct: 385 DIDK 388 >UniRef50_B8IYV5 NAD-dependent dehydrogenase subunit n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8IYV5_DESDA Length = 565 Score = 323 bits (828), Expect = 1e-86, Method: Composition-based stats. Identities = 127/515 (24%), Positives = 198/515 (38%), Gaps = 47/515 (9%) Query: 64 DERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYG 123 D + ++ +L+ + + V A + S+TP +P + ERE+ + +G Sbjct: 55 DTPEQPRAVSLCCILAHDGTRRLMARCTPPVTA----FVSMTPELPQLHYFEREIYEQWG 110 Query: 124 LIPVGLPDERRLVLPDDWPDELY------------PLRKDSM--DYRQRPAPTTDAETYE 169 + PVG P + + D + P ++ + A Sbjct: 111 VEPVGHPWLKSVRRIPDSAEAAARNAAESQTSSAAPAQESAEVVPSPALTASARPQTLPY 170 Query: 170 FINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMG 229 + + V +GP+H EPGHFR GEN++ + L Y HRG+E + T+ Sbjct: 171 PFYRVEGADVHEVAVGPVHAGIIEPGHFRFQCYGENVLHLEIALGYQHRGLEAMI-TQGP 229 Query: 230 YNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLG 289 L + G AH+TA+ +E G Q ERAQ++R I LE+ERL +H +LG Sbjct: 230 AGRRLHLLECAAGDSTVAHATAHCVLLERMTGQQPDERAQLLRRIGLELERLANHTGDLG 289 Query: 290 LACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLA 349 TGF R+R + + L G R GL GG+ DL + Sbjct: 290 AIAGDTGFLPTASWNGRIRGDFLNITASLCGNRFGRGLLRPGGVAYDLAPSECADMLARV 349 Query: 350 QQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPF 409 + + + VDV+L + R G ++P AR+ VG RA G D R P Sbjct: 350 RAAWHDARGSVDVMLDAVTVRNRLADTGMVEPATARELGLVGVAARACGLDVDARFHMPL 409 Query: 410 VGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFT------ 463 E DV++R VR E+ +L ++++ L L P T Sbjct: 410 SDLPCEGCAPRLEITGDVMARTLVRSRELDDSLRLLEFDLARLGALPHTKNAATAESTVS 469 Query: 464 ----------------------YIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAA 501 P A+ E RG+ H +T +L ++ Sbjct: 470 APATAAATNTSGTAAEAASFDALPPDTLAVALVEGWRGEVCHVGLTDSRGRLLVYKVVDP 529 Query: 502 TYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 ++ NW L LRGN +SD PL S + Y D Sbjct: 530 SFHNWAGLAMALRGNQISDFPLCNKSFNLSYCGHD 564 >UniRef50_UPI0001C42022 energy-converting hydrogenase B subunit N EhbN n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C42022 Length = 391 Score = 321 bits (824), Expect = 4e-86, Method: Composition-based stats. Identities = 107/384 (27%), Positives = 189/384 (49%), Gaps = 7/384 (1%) Query: 167 TYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAET 226 E + + + +G +H + EP R FV+ E I DA+ + HRG+E++ E Sbjct: 1 MEEKKAKKQEIIETEIQMGTVHPAALEPYRVRFFVEDEIIKDAEITIGVNHRGIERVMEG 60 Query: 227 RMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLL 286 + + L++++CGIC +H+ + E +G++VP+RA IR I+ E+ERLHSHLL Sbjct: 61 -LPVEKANMLTEKICGICSNSHTWNSVRTAEKGLGVEVPDRAVYIRVIVGELERLHSHLL 119 Query: 287 NLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGI--RRDLLKDDMIQ 344 LG C ++ M+ F +RET M + ++ G R YG ++IGG+ R +L + + + Sbjct: 120 YLGHGCETLAHETFSMRVFYIRETIMDLLAMIGGNRVQYGCSIIGGVRPRCELDDNRIQR 179 Query: 345 TRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTR 404 + + V + + + + R G G + E A + GP +RA+G RD R Sbjct: 180 ILDGMDLVEKNVLDFANRFVKDSVVASRISGTGYIPQEQALKLAVSGPTLRATGVKRDLR 239 Query: 405 ADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTY 464 D Y ++ ++ CDV ++L +R+ E++ A+ ++ + +LP G + + Sbjct: 240 TDM--YEYDNFDYDIITQDTCDVQAQLLMRVFEIFEAIKIVRQAIRDLPEGKITDRSWEM 297 Query: 465 IPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLI 524 I + E PRG H ++ ++ R + +N ++Y N ++D L Sbjct: 298 IDTDLIESYIEVPRGTLYHSYAI-EDGRVRHCIIRTPSMSNIGAMQYACIDNHITDGQLC 356 Query: 525 IGSLDPCYSCTDRMT-VVDVRKKK 547 I DPC++C+DR V D K Sbjct: 357 IVQCDPCFTCSDRAIEVYDTNYNK 380 >UniRef50_A0LSU1 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LSU1_ACIC1 Length = 499 Score = 321 bits (822), Expect = 6e-86, Method: Composition-based stats. Identities = 118/495 (23%), Positives = 210/495 (42%), Gaps = 21/495 (4%) Query: 48 FLYYKQGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPR 107 L + LF + + + ++ + V V YP+++ Sbjct: 17 ILDRLASNRFASLFATAPPESDLR-----LTALLASAGSIDAIDVAVPRGSTSYPALSAV 71 Query: 108 VPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAET 167 VPAA W ER++ D++GL P+G P L+LP L + + ++ P + Sbjct: 72 VPAASWYERKIHDLFGLEPLGHPRLDPLILP------LREAQPRPLPGQRSAIPPLTPDE 125 Query: 168 YEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETR 227 + + +P GP+ E + + GE+I R+F HRG+E+ E Sbjct: 126 AAIPSRVLGHGVFTIPHGPVRSGVYESVEYLVETPGEDIPYVGIRVFAKHRGIERRFED- 184 Query: 228 MGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLN 287 + ++ L++RV GI AH+ A+ +VE+ G+ R + +R I E+ER+ +HL Sbjct: 185 LDVSDGVLLAERVEGIASVAHALAFCHAVEDLAGVIPSPRDRSVRVIFAELERIANHLDV 244 Query: 288 LGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQ 347 G +F +E +++ G+R G+ + GGI + Sbjct: 245 ALKLADAAGLAVAVSRFGYHKERILRLIGAACGSRFGRGVVVPGGIGCEPAISP-NALLT 303 Query: 348 LAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADH 407 + REV D+L+ TP+ R G G LDP +AR +GP+ RASG D R Sbjct: 304 RLDDILREVFADADLLMQTPSFLDRLRGTGPLDPALARRHGALGPIGRASGFDDDDRWHR 363 Query: 408 PFVGYGLLP-MEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIP 466 P+ Y LP S D ++RL++R +E+ ++ +I + ++ +P Sbjct: 364 PYDEYSDLPQFPAVSSGSGDALARLEIRWSEIRSSAELIRQAVAHIAALSAPTAEPADVP 423 Query: 467 H------RFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSD 520 +G+AEAP+G+ ++ D ++ R R+A++ N + G+ ++D Sbjct: 424 AAIDRISGRGIGWAEAPQGEVVYVVECDD-GRISRCAPRSASFHNLVLFHDVFAGDILTD 482 Query: 521 APLIIGSLDPCYSCT 535 P I S + Sbjct: 483 FPFIEASFGLSIAGV 497 >UniRef50_A8MBT0 NADH dehydrogenase (Quinone) n=1 Tax=Caldivirga maquilingensis IC-167 RepID=A8MBT0_CALMQ Length = 424 Score = 319 bits (818), Expect = 1e-85, Method: Composition-based stats. Identities = 106/400 (26%), Positives = 162/400 (40%), Gaps = 29/400 (7%) Query: 165 AETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLA 224 + E +V IGP H S L + G+ I++A YVHR +EKLA Sbjct: 27 PIPKNMVEEAYKSDEYLVLIGPAHPGS-GHMRIILRLKGDYIVEAVPDPGYVHRSVEKLA 85 Query: 225 ETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSH 284 ETR+ + + L +R Y ++E + VP RAQ +R I+ E+ R+ H Sbjct: 86 ETRLFVHNIP-LVERPTIAESSIMDHGYVRAIEELGQLDVPPRAQYLRVIMDELSRIGDH 144 Query: 285 LLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQ 344 L + G+ F G +G+M F +RE + +TGAR T + G+R D+ D + Sbjct: 145 LYDTGILAVFLGHSTGYMWGFGLRELIVDALARMTGARITVSFVIPSGVRWDVHPDVLRY 204 Query: 345 TRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTR 404 + + +++ EL + P R +G L + VGP +RA G D R Sbjct: 205 IYNMTFFIEKKIDELGTIFTKNPVTVSRMKDVGVLTKDQCIKLGAVGPFLRACGVEYDNR 264 Query: 405 ADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPL------- 457 P+ Y L E+ D SR VR+ E+ +LN+I + N+P GP+ Sbjct: 265 RARPYAVYDQLEWEIPVADEGDAYSRFLVRVEEIRQSLNIIRQAVKNIPEGPVIGNKLMT 324 Query: 458 MVEGFTY-------------------IPHRFALGFAEAPRGDDIHWSMTGD-NQKLYRWR 497 V +P A EA RG ++ ++ + YR R Sbjct: 325 RVPPKEREKVAKDIRNYLFRLLIGLTLPEGEATTLTEAARGTLLYSLVSDGKSNVPYRLR 384 Query: 498 CRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 ++ N LRG + D P I GS DR Sbjct: 385 MITPSWYNLKPFMESLRGYRLMDLPAIYGSWGYFPPEADR 424 >UniRef50_A6UVJ6 Hydrogenase, component E-formate hydrogenlyase subunit 5-like protein n=1 Tax=Methanococcus aeolicus Nankai-3 RepID=A6UVJ6_META3 Length = 518 Score = 319 bits (818), Expect = 2e-85, Method: Composition-based stats. Identities = 104/503 (20%), Positives = 196/503 (38%), Gaps = 26/503 (5%) Query: 47 EFLYYKQGGWLSVLFGND---ERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPS 103 + L + + G++ F K N + Y + S+ + + V + S Sbjct: 28 KILKFTETGYVVQHFAIPSYNINKNNSNENKYKIYSVLRNDTELYVLSTMV---GTSFES 84 Query: 104 VTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTT 163 ++ ERE+ + YG++P P + + ++ T Sbjct: 85 LSQYNIKFQMFEREIAEQYGIVPKNHPWLKSVRYHKNYKGA---------PDVFGNNYTA 135 Query: 164 DAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKL 223 E+G ++ + V +GP+H EPGHFR GE I+ + + Y HRG+EK Sbjct: 136 PIPGNYPFYEVGGEEIHQVAVGPVHAGIIEPGHFRFNCIGETILSLEIQHGYQHRGIEKQ 195 Query: 224 AETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENA--MGIQVPERAQMIRAILLEVERL 281 + + + + G +S ++ ++E + E R +LLE+ER+ Sbjct: 196 ILN-CKKEVLPLIIESIAGDTVIGNSICFSEAIEWLSNCNYEANEPLYNYRRLLLEIERI 254 Query: 282 HSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDD 341 +H+ +G G+ + R+R + M ++ G R G L D Sbjct: 255 ANHIGTMGGLAGDVGYIPTASYYGRIRGDFLNMFVLICGNRFGRSSVRPFGAPFKLSDDH 314 Query: 342 MIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHAR 401 + + + +Q+++EV ++ +++L P + R G +D + A+ VGP RASG Sbjct: 315 IKELIKRFEQLKKEVIDVGNLMLDNPEVLGRFDYTGIVDTKTAKLIGLVGPAGRASGIKY 374 Query: 402 DTRADHPFV-GYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLD-------NLP 453 D R + + + + V SR K E ++ L + Sbjct: 375 DVRKSFSKAKNIYNRGIGLVARKDGAVSSRAKTYFYETLDSIEFCIELLKVADFQINDSA 434 Query: 454 GGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYML 513 +E P+ F + EA RG+ H +T +N + R++ + ++ NW L ++ Sbjct: 435 DKLEKIEKTVLKPNSFIITMEEAWRGELSHCIITDENGNIIRYKIKDPSFHNWTALELVV 494 Query: 514 RGNTVSDAPLIIGSLDPCYSCTD 536 R + D PL S + Y D Sbjct: 495 RNEGIYDFPLCNKSFNLSYCGFD 517 >UniRef50_A3DM94 Membrane bound protein complex subunit mbxL n=2 Tax=Desulfurococcaceae RepID=A3DM94_STAMF Length = 375 Score = 317 bits (812), Expect = 7e-85, Method: Composition-based stats. Identities = 103/376 (27%), Positives = 169/376 (44%), Gaps = 13/376 (3%) Query: 174 LGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEV 233 + K V +GP H + F+L +DGE ++D D ++HRG EK+ E R ++ Sbjct: 1 MSKAKVLTVFLGPQHPGAPGNVGFKLLLDGERVLDIDLIPGFLHRGFEKMMEYRRWDMDL 60 Query: 234 TFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACH 293 +S R+C YT ++E GI+ PE+A+ +R I+ E RL SHLL + Sbjct: 61 V-MSARICVEDPDHIELTYTHAMEQIFGIEPPEKAKYVRVIVAEFSRLASHLLWMMYFAG 119 Query: 294 FTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMR 353 RE +K + ++G R + GG+R D+ D +T ++ + ++ Sbjct: 120 PIAARYATSWAIAAREEILKWFDYVSGHRIYHHYIFPGGVRWDIPSDFKEKTLKVLKVIK 179 Query: 354 REVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYG 413 + ++ D P E+R +GRL P A GP +R SG D R + YG Sbjct: 180 PLIDDIRDGFFYHPIFEKRARDMGRLKPGDAIRLGATGPTLRGSGVKFDLRKVLKYDAYG 239 Query: 414 LLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLP-GGPLMVEGFTYIPHRFALG 472 + E+ S + D R VR+ E+Y ++ +I ++ +P GP IP +G Sbjct: 240 EIDFEIPSGEYGDSYDRALVRLREMYISMEIIRQAVEKMPTEGPYRYRLPATIPAGEGIG 299 Query: 473 FAEAPRGDDIHWSMTGDNQ--------KLYRWRCRAATYANWPTLRYMLRGNT---VSDA 521 E+ RG+ + + YR + R T A+ T+ + N ++D Sbjct: 300 RVESARGEFLAHILQRPPGARRYSKPLSPYRIKFRGPTMAHLTTVLKHIVHNEEITIADL 359 Query: 522 PLIIGSLDPCYSCTDR 537 P++IGS DPC DR Sbjct: 360 PVLIGSFDPCPPDIDR 375 >UniRef50_Q2NED9 EhbN n=5 Tax=Methanobacteriaceae RepID=Q2NED9_METST Length = 383 Score = 313 bits (802), Expect = 1e-83, Method: Composition-based stats. Identities = 104/375 (27%), Positives = 183/375 (48%), Gaps = 6/375 (1%) Query: 169 EFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRM 228 + +G +H + EP RLFV+ E + DA+ + HRG+E++ E + Sbjct: 10 TCDKTERQVFETEINMGTVHPAALEPYRVRLFVEDEIVKDAEITVGLNHRGIERIMEG-L 68 Query: 229 GYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNL 288 + L+++VCGIC H E A+GI++PERA +R + E+ERLHSH+L L Sbjct: 69 PVEKANALTEKVCGICSNGHIYNSCRVGEGALGIEIPERAVYLRVLAEELERLHSHMLYL 128 Query: 289 GLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGI--RRDLLKDDMIQTR 346 G ++ M+ F +RE+ M + ++ G R YG++++GG+ R DL + + Sbjct: 129 GHGSEVLCHETFAMRIFYIRESVMDLLYMMGGNRVQYGISVLGGVRPRADLNLKEQQRVL 188 Query: 347 QLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRAD 406 + +V + + ++ P + R G G L + A D GP +RA+G+ D R + Sbjct: 189 DTMDYIDEKVADFAERFIADPMVMHRITGTGELSQKQALDLHVTGPSLRATGYEYDFRTE 248 Query: 407 HPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIP 466 Y ++ ++ G DV + + +R E++ + +I + NLP GP++ + + Sbjct: 249 MF--EYEPFEFDIITQDGGDVRANILMRATEIFESTKIIRQVIKNLPKGPIVTRDWDLVD 306 Query: 467 HRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIG 526 + E PRG H ++ K+ R + +N ++ G+ + DA L I Sbjct: 307 SPVYKSYIEVPRGVCYHSYGL-EDGKVRHSIIRTPSMSNIGAMQESCIGHPIQDAQLAIV 365 Query: 527 SLDPCYSCTDRMTVV 541 S DPC++CTDR + Sbjct: 366 SCDPCFTCTDRAIQI 380 >UniRef50_A9FF67 NAD-dependent dehydrogenase subunit n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FF67_SORC5 Length = 495 Score = 312 bits (799), Expect = 3e-83, Method: Composition-based stats. Identities = 115/494 (23%), Positives = 198/494 (40%), Gaps = 31/494 (6%) Query: 44 EVVEFLYYKQGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPS 103 E+++ L + L+G R+ AV VL + V + Y Sbjct: 31 ELLKQLRADM--RVVTLYG---RRDVDRVAVTAVLQASDRSLHVSRTEVSAERG---YHE 82 Query: 104 VTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTT 163 +T A ERE+ + G G P + + + Sbjct: 83 MTTEHAALHCFERELHEQTGARIAGHPWLKPI---------------------RYEGQEQ 121 Query: 164 DAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKL 223 A + ++ K+ + V +GP+H EPG FR GE + + L Y HRG+E+ Sbjct: 122 SAMSSHPFYKIEGKEVHEVAVGPIHAGVIEPGSFRFMCLGEQVHHLEIHLGYQHRGVERR 181 Query: 224 AETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHS 283 R +T L + + G AH+ A+ +++E+ G ++ ++ RA+ LE+ER+ Sbjct: 182 LLERDP-RSLTPLIETIAGDTSVAHAWAHCSALESLAGCRLDIEIELARAVALELERVAM 240 Query: 284 HLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMI 343 HL L GF G + R+R T++ L G+R G GG+R L + + Sbjct: 241 HLSTLAGMAADVGFLQGATTYGRLRTTAINTMMRLCGSRFGKGALRPGGVRMRLPPEALP 300 Query: 344 QTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDT 403 R ++ ++ + D L ++ R G L AR+ VG RASG D Sbjct: 301 DIRANLDLLQADLPIINDCFLMARTVQHRLRSTGTLTTAQARELGLVGLAARASGIELDA 360 Query: 404 RADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGF- 462 R Y ++P++ D +R ++RI E+ +L+ + + Sbjct: 361 RHLVEHGAYSVVPIQPVVLPDGDCWARARIRIAEIEASLSWVSAVIALYANWERPRPSIG 420 Query: 463 TYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAP 522 P + A+ E RG+ +H TG + ++ ++ + + NW L +RGN +SD P Sbjct: 421 ELAPDQLAISLVEGFRGEVVHCVETGAHGEVVHYKVQDPSLRNWMGLALAVRGNEISDFP 480 Query: 523 LIIGSLDPCYSCTD 536 + S D Y D Sbjct: 481 ICNKSFDLSYCGND 494 >UniRef50_A9BJL6 NADH dehydrogenase (Quinone) n=3 Tax=Thermotogaceae RepID=A9BJL6_PETMO Length = 369 Score = 312 bits (799), Expect = 3e-83, Method: Composition-based stats. Identities = 93/370 (25%), Positives = 163/370 (44%), Gaps = 10/370 (2%) Query: 177 KKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFL 236 K + +GP H ++VDG+ I+ A +HRG EKL E R+ N L Sbjct: 1 MKELKLYLGPNHPGMHGNFSVHMYVDGDTIVRARPMPGMLHRGFEKLMERRLWMNN-LAL 59 Query: 237 SDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTG 296 R+C + Y ++E GI+VPE+A IR I+LE+ R+ +HL++LG G Sbjct: 60 IPRICVPEPDINEMVYAMAIEELTGIEVPEKAHWIRMIILELARIANHLMSLGGIGGPVG 119 Query: 297 FDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREV 356 +G R+ + + E +TGAR + + GG+R+DL ++ + + + + + Sbjct: 120 LYTGPNWGLADRDLILDIFEEITGARIYHMYIVPGGVRKDLREETIEKIKSFLDYLENRL 179 Query: 357 QELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRAS-GHARDTRADHPFVGYGLL 415 E D++L ++RT L E+ + G +R++ G A D R P+ Y + Sbjct: 180 PEYEDLILKNSLFQRRTKDKLLLPAEVVWELGVTGIGMRSAVGEAYDIRKVDPYARYDQV 239 Query: 416 PMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFT-------YIPHR 468 V + D +R+ + E Y ++ +I L+ +P + + +P Sbjct: 240 EFYVPTANYSDGYTRVYFKYLETYQSIKIIRQVLEKMPQKGKVWNKISNGSALRWRVPKG 299 Query: 469 FALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYAN-WPTLRYMLRGNTVSDAPLIIGS 527 E RG+ ++ ++ K YR R A+Y + L G + DA L + + Sbjct: 300 QVYTHVECARGEYGYYMVSEGEDKPYRVAVRGASYPQGLLGVEKYLPGTRIEDAALWMDT 359 Query: 528 LDPCYSCTDR 537 + C DR Sbjct: 360 MGVCPPEIDR 369 >UniRef50_A4WMP9 NADH dehydrogenase (Ubiquinone) n=5 Tax=Thermoproteaceae RepID=A4WMP9_PYRAR Length = 407 Score = 311 bits (798), Expect = 3e-83, Method: Composition-based stats. Identities = 102/391 (26%), Positives = 158/391 (40%), Gaps = 26/391 (6%) Query: 171 INELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGY 230 G ++ + GP H +S F + VDG+ +++ YVHR MEKL ETR Sbjct: 19 EQLEGKRRILDIFWGPQHPSS-GHTRFIVEVDGDIVVNVTPDPGYVHRTMEKLGETRHWI 77 Query: 231 NEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGL 290 + L +R+ + AY +VE + V RAQ +R I+ E+ R+ +HL +LGL Sbjct: 78 QNIP-LFERLSLPDAINVTWAYAMAVERVAKLDVSPRAQYLRVIMAELSRISTHLYDLGL 136 Query: 291 ACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQ 350 G +GFM F +RE +++ +++G+R T L GG+R QT+ Sbjct: 137 HAIMIGSSTGFMWGFGLRELLVQLWAMVSGSRTTPTWVLPGGVRTAPPDAFYEQTKGFLD 196 Query: 351 QMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFV 410 + +++ E V +++ P R +G L E A GP R SG D R + + Sbjct: 197 YLEKKIDEFVRLVVKNPVGYYRLKDVGYLSKEDAARLMATGPGARGSGIDWDARRVYKYG 256 Query: 411 GYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFT--YIPHR 468 Y +V E D ++R VRI E+ + +I LD +P +V IP + Sbjct: 257 IYDEFEWDVCVEDAGDSLARTMVRICEIQQSAKIIRQALDRVPKDGPLVGEAVLHRIPPK 316 Query: 469 FALGFAE----------------------APRGDDIHWSMTGDNQKLYRWRCRAATYANW 506 E RG +K YR R ++ N Sbjct: 317 QREKANEIIRLGALYTTMLPQGEGVGVTEGGRGRYFFHVFGDGTEKPYRVRISTPSWQNL 376 Query: 507 PTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + G + D P I GS DR Sbjct: 377 RAMIRAFIGARLMDLPAIYGSFGYFPPEQDR 407 >UniRef50_P15689 NADH-ubiquinone oxidoreductase 49 kDa subunit n=10 Tax=cellular organisms RepID=NDUS2_PARTE Length = 400 Score = 310 bits (793), Expect = 1e-82, Method: Composition-based stats. Identities = 85/396 (21%), Positives = 150/396 (37%), Gaps = 41/396 (10%) Query: 182 VPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 241 V GP H + L ++GE + D + +HRG EKL ET+ Y + DR+ Sbjct: 6 VNFGPQHPAAHGVLRLILQLNGEVVEKMDIHIGLLHRGSEKLMETK-PYLQSMPYFDRLD 64 Query: 242 GICGFAHSTAYTTSVENAMGIQ-VPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG 300 + AY ++E + ++R + E+ R+ +H+L + G S Sbjct: 65 YVSMMVQEHAYCLAIEALLNTTNYTANFVLVRTMFDELTRILNHMLAIACHALDIGSMSS 124 Query: 301 FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRD-LLKDDMIQTRQLAQQMRREVQEL 359 F RE M+ E + G R + + L + + + E+ Sbjct: 125 IFWAFEEREKIMEFYERVCGRRMHAAFYRPNEVNLNFLSVKLLTDILEFNNNCLTTLSEM 184 Query: 360 VDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRAD--HPFVGYGLLPM 417 ++L +QR V IG + + DF G M R++G RD R D + Y L Sbjct: 185 HNILTYNKIWKQRLVNIGSISYKDCLDFGLTGVMARSTGIKRDLRMDAFDTYANYYYLNF 244 Query: 418 EVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLP------------------------ 453 ++ Q D R +R+NE+ ++N+I + L Sbjct: 245 RSYTGQAGDSYDRFLIRMNEMSESINIISQAIFKLTTSKNTCSPASILKALNKKKFISQT 304 Query: 454 ------GGPLMVEGFTYIPHRF------ALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAA 501 ++ F Y F E+P+G+ ++ + K YR + R+ Sbjct: 305 YKNEYSSMEKLITHFKYWSEGFKIQSNWTYQAVESPKGEFGVTLVSDGSNKPYRCKVRSP 364 Query: 502 TYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 Y + L M +G+ ++D +IG++D + DR Sbjct: 365 AYHHLQVLPKMSKGHLLADLSALIGTIDIVFGEIDR 400 >UniRef50_B1YB08 NADH dehydrogenase (Quinone) n=5 Tax=Thermoproteaceae RepID=B1YB08_THENV Length = 407 Score = 306 bits (784), Expect = 1e-81, Method: Composition-based stats. Identities = 100/408 (24%), Positives = 180/408 (44%), Gaps = 29/408 (7%) Query: 154 DYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRL 213 ++ G ++ VV +GP H S + +DG+ I + Sbjct: 5 EWPFNLQFGNTFYVQNEEELRGGERGLVVVVGPQHPGS-GHMRLFVVLDGDIIKEVVPDP 63 Query: 214 FYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRA 273 +VHRG+EKLAE R Y + L ++ + + T ++E A+G++ P RA+ +R Sbjct: 64 GFVHRGVEKLAENR-PYWTLIPLVEKASIMDSMNITLPITLALEKALGLEPPPRAKYLRT 122 Query: 274 ILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGI 333 + E+ R+ +HL +L L F G + FM F + + ++ +TGAR T + GG+ Sbjct: 123 AMAELSRIRTHLYDLALLGIFLGHSTAFMWGFALMDLYAEVFAKITGARTTVAYPVPGGV 182 Query: 334 RRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPM 393 RRD+ ++ + +L ++ ++++ V L P + R G+G +D + A + VGP Sbjct: 183 RRDVKREHIEAVEKLLRKTEEKLRDFKTVFLDNPVTKARLEGVGVVDAKRAAELGVVGPF 242 Query: 394 VRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLP 453 RA+G D R P+ Y L EV +E+ D ++R+ VR E+Y +++++ L NLP Sbjct: 243 ARAAGIDHDVRKAAPYDAYPELDFEVVTEKAGDAMARVLVRWREMYVSMDIVRQALKNLP 302 Query: 454 GGPLMVEGFTYIPHRFALGFAEAPRGDDIHW------------------------SMTGD 489 G ++ + + + E G + T Sbjct: 303 EGDVIDQALLF---KNPEYRREGMGGVLGVYTYMYPEPGEYAAVAEAARGATYIHLWTTG 359 Query: 490 NQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 Q++YR R ++ N + +RG ++D P + S DR Sbjct: 360 TQRVYRMRYVTPSWRNLKAMAEAMRGERLADMPAVYMSFGYFPPEADR 407 >UniRef50_A3CUR5 NADH dehydrogenase (Ubiquinone) n=3 Tax=Methanomicrobiales RepID=A3CUR5_METMJ Length = 362 Score = 306 bits (783), Expect = 2e-81, Method: Composition-based stats. Identities = 102/367 (27%), Positives = 172/367 (46%), Gaps = 8/367 (2%) Query: 174 LGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEV 233 + + +P+GP+H EP + GE ++ + L Y+ +G+E++ R EV Sbjct: 1 MKKTVDVSIPLGPMHPCWKEPVRLKCETAGERVLKTELELGYMKKGIERIMRGRPW-QEV 59 Query: 234 TFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACH 293 FL++RVCGIC H+ + ++E I VP RA +R ++ E++R+ SH+L C+ Sbjct: 60 MFLAERVCGICSVVHNMVFIETMEEISDIPVPPRAAYLRVVVNELDRMASHILANFSYCY 119 Query: 294 FTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMR 353 ++ M +RET + E +TG+R + GG+R DLL +D ++ Sbjct: 120 TIEHETLAMYLLNIRETVLDNLERITGSRINTAYMIPGGVRFDLLPEDAAALLADLAKVE 179 Query: 354 REVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGH-ARDTRADHPFVGY 412 E++ V + + P + R+ GIG + E A VGP RASG D R HP Y Sbjct: 180 EEMKRYVRIFETGPLIALRSKGIGYMSREEAIRAHTVGPTARASGVEDSDLRLRHPT--Y 237 Query: 413 GLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALG 472 L + D +R+ VR EV+ ++++I ++ LP GP+ G A Sbjct: 238 RELGFTQITRTEGDNFARVMVRFQEVFQSIDLIRKCVETLPEGPIRGGG--LCKAGEASY 295 Query: 473 FAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLR--GNTVSDAPLIIGSLDP 530 EAPRG+ + T + ++ R + N + + +++D S DP Sbjct: 296 AGEAPRGELTYTIKTDEYGRVVDIAIRTPSIMNIEACAHSMIVDAASIADVTSTFISSDP 355 Query: 531 CYSCTDR 537 C +C +R Sbjct: 356 CIACNER 362 >UniRef50_A0L9R4 Membrane bound protein complex subunit mbxL n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L9R4_MAGSM Length = 391 Score = 300 bits (768), Expect = 1e-79, Method: Composition-based stats. Identities = 100/366 (27%), Positives = 169/366 (46%), Gaps = 7/366 (1%) Query: 178 KNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLS 237 K + GP H L + G+ I+DA + Y+HRG EKL E R + + Sbjct: 27 KYLKLWHGPQHPGITGNMSVELTLCGDEIVDAKTHVGYLHRGFEKLMERRTFI-QCFPIV 85 Query: 238 DRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGF 297 RVC + Y +VE GI+ PERA+ IR ++LE+ R++S+L+ LG G Sbjct: 86 CRVCVPEPDFNEYCYAAAVEELAGIECPERARWIRTLILEMGRINSYLMYLGGQSGAFGM 145 Query: 298 DSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQ 357 +R+ + E LTGAR + L GG+R L + + + +++ ++ Sbjct: 146 GVIGQWTTYIRDLMLDRFEELTGARIYHMFILPGGVRDGLPEGFEQRMEETLRELESTMK 205 Query: 358 ELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPM 417 ++ DVL ++R+VG+G +DP + GP RA+G A+D R D P++ Y L Sbjct: 206 DVRDVLFHNAVFKKRSVGVGVIDPAWLEPYGVTGPNARAAGVAKDVRIDQPYLVYPELSY 265 Query: 418 EVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPG-GPLMVEGFT----YIPHRFALG 472 E + D+ +R VR ++ ++++I L +P GP+M + IP Sbjct: 266 EAIVGKDSDIYTRADVRYRDLLQSVDLIRQILARMPHEGPVMAKLPNVLHWKIPQGETYI 325 Query: 473 FAEAPRGDDIHWSMTGDNQKLYRWRCRAATYAN-WPTLRYMLRGNTVSDAPLIIGSLDPC 531 E RG+ ++ +T + R R +Y + L +M+ +SD ++ SL Sbjct: 326 RGECSRGEYGYYVVTDGSGYPRRINVRGPSYTHAVALLEHMIINQNISDVAGLMVSLHTY 385 Query: 532 YSCTDR 537 +R Sbjct: 386 PPEVER 391 >UniRef50_A6Q6W4 Ni-Fe hydrogenase, large subunit HycE n=3 Tax=Epsilonproteobacteria RepID=A6Q6W4_SULNB Length = 455 Score = 296 bits (757), Expect = 2e-78, Method: Composition-based stats. Identities = 119/470 (25%), Positives = 207/470 (44%), Gaps = 25/470 (5%) Query: 67 KLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIP 126 + G + + V E T R + P ++ + P+A+W ER++ D +G++ Sbjct: 10 EREGTFEIVTVFESE-------TQRETISKENPVIRTLAKKHPSAIWFERKMSDDFGIVI 62 Query: 127 VGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGP 186 D+R L+ + +P ++P++K A T + + V +GP Sbjct: 63 EDAFDKRPLLHQERFPKAIHPMQKAFQKNTLDFAEFTPYKY----EAIQGDGVFQVSVGP 118 Query: 187 LHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGF 246 +H EPGHF GE+++ + R FY +RG+EK+ E + E + +R+ G Sbjct: 119 IHAGIIEPGHFHFSQAGEDMLHQEVRHFYKYRGIEKMLEGKTLL-EAKPVIERISGNESI 177 Query: 247 AHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFR 306 A+ TA+ V A G+++P + A LLE+ER+ HL +LG + GF + + Sbjct: 178 AYQTAWRDIVCQAAGMELPLSLRKRHAFLLEMERIIHHLTDLGFIPNDAGFGAALAFASK 237 Query: 307 VRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLST 366 + E + + + +TG R + G +L D+ +++++ ++ Sbjct: 238 LSEDARRQLQNVTGHRFGFDAI---GFENKVL--DISSLYDYLDGLQKDIAFFETWIMDI 292 Query: 367 PNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCD 426 P++ R G L + VG + RASG + D R PF Y E+ +EQ D Sbjct: 293 PSLWDRFDTTGILQKADVLKYDTVGVVARASGFSLD-RRSEPF--YLEHGFEIQTEQSGD 349 Query: 427 VISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSM 486 V +R KVR+ EV ++ M+ + L+ I FAE+ G+ Sbjct: 350 VAARFKVRLQEVKNSIVMMKHFLEE----DDTHIDIEKIKDGDYTAFAESSLGELFMNIE 405 Query: 487 TGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 D + R+ R ++ NW TL M+ N ++D PLI S D Y+ D Sbjct: 406 IKD-GVIERFFVRDPSFMNWQTLHLMMPNNIIADFPLINKSCDLSYAGND 454 >UniRef50_UPI00019012E4 NADH dehydrogenase subunit D n=1 Tax=Mycobacterium tuberculosis T92 RepID=UPI00019012E4 Length = 424 Score = 291 bits (745), Expect = 5e-77, Method: Composition-based stats. Identities = 83/296 (28%), Positives = 147/296 (49%), Gaps = 3/296 (1%) Query: 172 NELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYN 231 + VV +GP H ++ L ++GE +++A + Y+H G+EK E R Sbjct: 31 RSADPGERIVVNMGPQHPSTHGVLRLILEIEGETVVEARCGIGYLHTGIEKNLEYRYWTQ 90 Query: 232 EVTFLSDRVCGICGFAHSTAYTTSVENAMGI--QVPERAQMIRAILLEVERLHSHLLNLG 289 VTF++ R+ + F + TAY VE +GI ++PER +IR +++E+ R+ SHL+ L Sbjct: 91 GVTFVT-RMDYLSPFFNETAYCLGVEKLLGITDEIPERVNVIRVLMMELNRISSHLVALA 149 Query: 290 LACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLA 349 G + FR RE + + E +TG R GG+ +DL + + + Sbjct: 150 TGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYIRPGGVAQDLPPNAATEIAEAL 209 Query: 350 QQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPF 409 +Q+R+ ++E+ ++L + RT G+G LD GP++R++G D R P+ Sbjct: 210 KQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCMALGITGPILRSTGLPHDLRKSEPY 269 Query: 410 VGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYI 465 GY +V ++ CD R +R+ E++ ++ +++ LD L GP M+ Sbjct: 270 CGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKIVEQCLDKLRPGPTMISDRKLA 325 >UniRef50_C6WGH3 NADH dehydrogenase (Quinone) n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WGH3_ACTMD Length = 358 Score = 283 bits (724), Expect = 1e-74, Method: Composition-based stats. Identities = 100/367 (27%), Positives = 152/367 (41%), Gaps = 23/367 (6%) Query: 174 LGDKKNNVVPIGPLHVTSDEPGHFRLFV-DGENIIDADYRLFYVHRGMEKLAETRMGYNE 232 + VV +GPLH ++ RL V D E I A+ + ++HRG EKL E R Y + Sbjct: 12 KHLGVDRVVDLGPLHPSAHGAYRLRLTVRDDEVITSAEPLVGHLHRGAEKLFEVR-DYRQ 70 Query: 233 VTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLAC 292 V L++R + F + A +VE G+ VP RAQ +RA+L E+ R+ +HL+ L Sbjct: 71 VLTLANRHDWLAAFCNELAVALAVERMTGMDVPPRAQWLRALLCELNRVMAHLVFLAPLT 130 Query: 293 HFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQM 352 R RE + E +G R + N IGG+R D+ + + Sbjct: 131 DPVAAA-------RGREAVQAVLEEASGGRIHFMANRIGGLREDVPAGWAERVAGALDAV 183 Query: 353 RREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGY 412 P + G+G L A GP+ RASG D R D P Y Sbjct: 184 E------------VPEVPTGLAGLGVLSRADALARGVTGPIGRASGVDLDLRRDDPLPAY 231 Query: 413 GLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPL--MVEGFTYIPHRFA 470 L + G D +R+ ++++ A+ + L LPGGP+ + P Sbjct: 232 RELDVRPSVRDGGDAHARVACMVDDLAQAVALARECLRRLPGGPVNLRLPKAVKAPEGSV 291 Query: 471 LGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDP 530 EAP G + + +R + R ++ N L +L G V+ PL++GS Sbjct: 292 YTRVEAPLGVSGVHLASRGEKTPWRLKLRTPSFNNVQALSALLPGTPVAQLPLVLGSFAV 351 Query: 531 CYSCTDR 537 DR Sbjct: 352 VVGDIDR 358 >UniRef50_D1LDT9 NADH dehydrogenase subunit 7 (Fragment) n=2 Tax=Euplotidae RepID=D1LDT9_EUPCR Length = 462 Score = 283 bits (724), Expect = 1e-74, Method: Composition-based stats. Identities = 88/418 (21%), Positives = 152/418 (36%), Gaps = 44/418 (10%) Query: 163 TDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEK 222 +N+L + ++ GP H S F L ++GE I AD + ++HRG EK Sbjct: 45 WTHNNSSKLNKLEQTQTFMMNFGPQHPASHGVLRFVLQLEGEYIRHADANIGFLHRGTEK 104 Query: 223 LAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGI-QVPERAQMIRAILLEVERL 281 L E R + + DR+ + + AY ++EN +G +RA+ E+ RL Sbjct: 105 LIEQRTYLKSLPYF-DRLDYVSMMSQEHAYCLAIENLLGSSTFTSFFVQVRALFDELTRL 163 Query: 282 HSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRR-DLLKD 340 +H L + G S F RE M+ E ++GAR + L Sbjct: 164 MNHFLGISTHSLDVGNMSPAFWAFEERERLMEFYERVSGARMHAAFYRPNDLDWTGLNYQ 223 Query: 341 DMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHA 400 I + + E+ +L + R V IG +D F+ G + R++G Sbjct: 224 FFIDLLFFLNNTYKSITEMFVILATNNIWRSRLVRIGVVDNAQVPLFAASGVVSRSAGFK 283 Query: 401 RDTR--ADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNL------ 452 +D R + Y L + + D R +RI E+ ++ +I + NL Sbjct: 284 KDLRILKTSTYSYYWFLKLRSFLGKMGDCYDRFIIRIREMLESVFIIYQIISNLLVVFES 343 Query: 453 ---------------------------PGGPLMVEGFT------YIPHRFALGFAEAPRG 479 ++ F +P EAP+G Sbjct: 344 TTALPFWYNTESYVSATFTKSQFNKKSTSMEALITHFKHYSEGIKVPAGLVYQSVEAPKG 403 Query: 480 DDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + ++ + K +R + R Y + + +RG+ +D I+GS D + R Sbjct: 404 EFGVSLISDGSSKPFRCKIRTPAYHHLQFMSSQIRGHFFADMITILGSQDIVFGEVIR 461 >UniRef50_Q0BPG8 Formate hydrogenlyase subunit 5 n=1 Tax=Granulibacter bethesdensis CGDNIH1 RepID=Q0BPG8_GRABC Length = 517 Score = 280 bits (717), Expect = 8e-74, Method: Composition-based stats. Identities = 105/458 (22%), Positives = 178/458 (38%), Gaps = 16/458 (3%) Query: 89 TVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWP---DEL 145 + V +P+++P PAA W ER +RD++G D R + WP Sbjct: 65 ILPVATPIEGGRFPALSPFRPAAAWQERAIRDLWGYEAEHGVDSRPWLDHGRWPISAPLS 124 Query: 146 YPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGEN 205 Q T F++ D + IGP+H EP RL + G Sbjct: 125 PRPGPPLPPPEQAEWRMTSPFASSFVSSRPDIALHERSIGPVHPLMREPAQLRLHLHGTL 184 Query: 206 IIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVP 265 I A++RL Y HRG++ L + + ++ R+ G AH A+ + E A+ ++ P Sbjct: 185 IRQAEWRLGYTHRGIQWLMRGK-PLRDAIRIAARITGDAALAHGLAFARAAEAALRLEPP 243 Query: 266 ERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTY 325 RA ++R ++ E+ER HL L G D+ + RE ++ + G R Sbjct: 244 PRALLLRGLMNELERCAVHLHVLAATASAAGADTYAAKLSAWRERLLRAIQEAFGNRMMI 303 Query: 326 GLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQR-----TVGIGRLD 380 L + GG+ DLL + Q + R + EL++ + ++ G L Sbjct: 304 DLLIPGGVLTDLLDGT--ALETVLQALARTMPELIEGYETAASLSGHGLCACLRGCAVLS 361 Query: 381 PEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYT 440 A + GP RASG D R +G + + D +R++VR+ E+ Sbjct: 362 GSDAVSLAVPGPAGRASGRPHDLRTTWQQAPHGTV--HRLVLENGDADARMRVRLAEIQE 419 Query: 441 ALNMIDYGLDNLPGGPLMVEGFTYIPH--RFALGFAEAPRGDDIHWSMTGDNQKLYRWRC 498 +L + L++LP GP+ + G E+ RG HW + + Sbjct: 420 SLRLALLFLESLPVGPIANPMPIGTGNASGEGYGGVESARGACWHWLRI-EGGMVVSAHA 478 Query: 499 RAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 ++ P + L G + + + S + D Sbjct: 479 ADPSWRLIPAIEAALPGTDIDRLGVALASFALSPAGAD 516 >UniRef50_A5FW46 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FW46_ACICJ Length = 476 Score = 276 bits (707), Expect = 1e-72, Method: Composition-based stats. Identities = 129/474 (27%), Positives = 198/474 (41%), Gaps = 32/474 (6%) Query: 66 RKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLI 125 + +G + YV S + V A PS+ P W ERE D G+ Sbjct: 33 PEADGRQTLRYVSSRPGIAGFEVW---SVPAG-GTVPSIATIWPLLGWYERETADHRGIA 88 Query: 126 PVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIG 185 G P+ L+ PLR D + + L V+P G Sbjct: 89 FSGQPEPFSLI---------APLRAD------------EEADLRRLPGLSGDAVQVLPFG 127 Query: 186 PLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICG 245 P+ E F F GE I+ LF HRGME + L++RV G+ Sbjct: 128 PVRAGVVESAEFSFFYVGEAILHYVPHLFLKHRGMEDRFVDQTP-ETGLVLAERVSGVGS 186 Query: 246 FAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFF 305 AH+ AY ++E A + VP RA+ R I+ E+ERL++HL LG T + Sbjct: 187 VAHALAYAQAMEAAAQVAVPGRARYQRVIVAELERLYNHLHYLGHLADTTTLKVAHAEGA 246 Query: 306 RVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLS 365 + E ++ +TG+R G+ GG+RR+L + +R ++ + L + Sbjct: 247 LLAERVKQIGARVTGSRFLRGVIAPGGLRRELR---VEGLAGALDALRAPIRRYIARLDA 303 Query: 366 TPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGY--GLLPMEVHSEQ 423 + + R G L E+A D GP+ RASG RD R DH + Y L + V + Sbjct: 304 SESHFDRLATTGVLPREVAFDQGATGPVARASGLDRDLRRDHAYAAYDDPDLALAVATGT 363 Query: 424 GCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIH 483 D +R +VRI E+ AL MI + PGG + V A+G+AE+PRG I+ Sbjct: 364 DGDAHARARVRIAEIENALLMIVRAIALTPGGAIRVACAPAA-GAEAMGWAESPRGTLIY 422 Query: 484 WSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 G + +L R + ++ +++NW Y + G + D + S + R Sbjct: 423 AVHVGPDGRLARVKIKSPSFSNWRVFPYTVHGTNMMDYAINEASFGLTIAGCAR 476 >UniRef50_C0SF51 NADH-ubiquinone oxidoreductase 49 kDa subunit n=1 Tax=Paracoccidioides brasiliensis Pb03 RepID=C0SF51_PARBP Length = 447 Score = 273 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 84/401 (20%), Positives = 162/401 (40%), Gaps = 16/401 (3%) Query: 142 PDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFV 201 + P + + + + ++ V GP H + L + Sbjct: 58 DPDFAPGGPKHQPIKPPGSYAEPSALESEVGNGRKIRHYTVNFGPQHPAAHGVLRLILEL 117 Query: 202 DGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMG 261 +GE I+ AD + +HRG EKL E + Y + DR+ + + ++ +VE + Sbjct: 118 NGEEIVRADPHVGLLHRGTEKLIEYKT-YMQALPYFDRLDYVSMMTNEQCFSLAVEKLLN 176 Query: 262 IQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGA 321 I++PERA+ IR + E+ R+ +HL+++ G + F+ F RE M+ E ++GA Sbjct: 177 IEIPERAKWIRTMFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGA 236 Query: 322 RKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDP 381 R GG+ +D+ + Q A +L + S + G+L+P Sbjct: 237 RLHAAYIRPGGVHQDIPLGLLDDIYQWATHSATASTKLKN--CSPKIVS------GKLEP 288 Query: 382 EIARDFSNVGPMVRASGHARDTRADHPFVGYGLLP--MEVHSEQGCDVISRLKVRINEVY 439 R F + + + A F G P + + + VR+ + Sbjct: 289 RNRRRF--LPQRLSITALAESCSVAPLFHGMSANPNLRRLRPGRIRRAYAAGPVRVEDYK 346 Query: 440 TA---LNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRW 496 + + ++ L L+ +P EAP+G+ + ++ +++ YR Sbjct: 347 ISPPPRAAMKENMEALIHHFLLFTKGYAVPPGETYSAIEAPKGEMGVFLVSDGSERPYRC 406 Query: 497 RCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + RA +A+ + RG+ ++DA IIG++D + DR Sbjct: 407 KIRAPGFAHLSCFDQISRGHLLADAVAIIGTMDLVFGEVDR 447 >UniRef50_B0SCU7 Metal (Ni/Fe) hydrogenase, large subunit n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SCU7_LEPBA Length = 475 Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats. Identities = 91/385 (23%), Positives = 161/385 (41%), Gaps = 17/385 (4%) Query: 167 TYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAET 226 Y + +GP+H EPGHFR VDGE I RL + RG+ Sbjct: 92 FYHGLKVPFSDGEYSHAVGPIHAGIIEPGHFRFIVDGEVIRHLTIRLGFQKRGIRDHLLH 151 Query: 227 RMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLL 286 + N+V S+ + G ++ A++ E+ I V + ++ R+ILLE+ER+ H+ Sbjct: 152 KA-MNQVMPYSEMISGDTSVGYALAFSKIYEDLYEIPVSKEIRLFRSILLELERIAVHIG 210 Query: 287 NLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLL---KDDMI 343 +LG G+ + R ++ + E TG R + G + + K Sbjct: 211 DLGGISEDIGYYPLYGVCVTERGAALGLMEAWTGHRFGKSVVRPGRLYLNNRLNAKQAKE 270 Query: 344 QTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDT 403 +QL ++++ + LS +++R G G + ++F VG + R +G D Sbjct: 271 SFKQLKNAYIKKIRPQILRALSISTLKERMQGCGFISEMDVQNFGFVGMVARMAGVNEDL 330 Query: 404 RAD-HPFVGYGLLPM-EVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEG 461 R + + + LP+ E H DV +R+ +R +E+ +++ I+ ++ + L+ E Sbjct: 331 RIENFDYPNWNPLPLKEEHHHYNGDVWARMYIRYSEIEQSMDWIEKTMEEI-NWDLLWEP 389 Query: 462 FTYIPH----------RFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRY 511 +P+ F EA RG + +N + R + NW L Sbjct: 390 KVKVPNQEILTKRTKPGFYYSAVEAWRGPLLVALQFDENGLVNNSYIRDPSVLNWHALEL 449 Query: 512 MLRGNTVSDAPLIIGSLDPCYSCTD 536 +RG V+D PL S + Y D Sbjct: 450 AVRGEQVADFPLNNKSFNLSYVGFD 474 >UniRef50_A5UWP3 NADH-ubiquinone oxidoreductase, chain 49kDa n=2 Tax=Roseiflexus RepID=A5UWP3_ROSS1 Length = 358 Score = 266 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 95/358 (26%), Positives = 158/358 (44%), Gaps = 4/358 (1%) Query: 180 NVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRG-MEKLAETRMGYNEVTFLSD 238 + +GP H P F L + + ++D +Y+ + RG E+L R+ + L Sbjct: 3 YSLALGPFHPAWLGPQRFILHIADDRVVDVEYQNGFNERGCAERL--PRLPLPDALHLVA 60 Query: 239 RVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFD 298 R+CG C FAHS A+ ++E +V RA ++R + E+ER +HL G + Sbjct: 61 RICGECSFAHSLAFCQAIEQVQRRKVGARAALLRVAIAELERTAAHLYTARAVLDAIGME 120 Query: 299 SGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQE 358 + S M ++TG R + GG+ RDL + + + M ++ Sbjct: 121 QRGAILDHFCQQSRDMLALVTGGRIPPPVCAPGGLLRDLTPVERQEVLAMLPGMSADLYR 180 Query: 359 LVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPME 418 +D L+ + RTV +G L A F GP+ RASG RD R D P+ Y +L ++ Sbjct: 181 FIDRLIDQRFLLMRTVEVGVLPRAAAEQFGVRGPLARASGIRRDVRVDQPYAAYSMLDVQ 240 Query: 419 VHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPR 478 ++G DV +RL + + E Y + +++ L LP +VE +P A E PR Sbjct: 241 PIIQEGGDVYARLLLLLLEAYEGVKLVESALQRLPEEDPIVELPHELPRGQASSVVEGPR 300 Query: 479 GDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 G + + +L R + + R +L + D I+ SL C +C + Sbjct: 301 GAIRYTLESDGV-RLTRVQIDTPRQCDRLLARTLLSRAQLDDVMAILASLAVCVACAE 357 >UniRef50_A9B5Q0 NADH-ubiquinone oxidoreductase chain 49kDa n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B5Q0_HERA2 Length = 368 Score = 260 bits (665), Expect = 9e-68, Method: Composition-based stats. Identities = 98/358 (27%), Positives = 152/358 (42%), Gaps = 4/358 (1%) Query: 180 NVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGM-EKLAETRMGYNEVTFLSD 238 V+P+GP H P L V+GE I D ++R Y +RG+ E+L TR + L Sbjct: 13 YVLPLGPFHPDWQTPMRMVLRVEGEQIADVEFRDGYTNRGISERL--TRTTIPQGLHLVS 70 Query: 239 RVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFD 298 +C AHS + ++E + I ERA +R + EVER HL + G Sbjct: 71 HICAADSHAHSLGFCLALEQLLKINASERAAALRLLACEVERATVHLSTMKEVLTILGLQ 130 Query: 299 SGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQE 358 ++ ++ + L G + GG+R+DL + +++ R + Sbjct: 131 RDAEHVQKLHHGLFEVMQHLCGTSSPPNYIVPGGVRQDLSSTEQESMALQFRRLERLMYR 190 Query: 359 LVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPME 418 VD + + +R VG+G L E A F GPM RA+G D R D + Y P Sbjct: 191 FVDRFIDHRGVLRRCVGVGVLSREAAEQFGVRGPMARAAGIGFDARIDRAYGAYAQFPPS 250 Query: 419 VHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPR 478 +++ DV +RL + E + +L + L NLP G +P E+ R Sbjct: 251 RVTQERGDVYARLVIFSLEAFESLKLAIRVLANLPSGDWAGNAPDSVPQGSVTSNIESAR 310 Query: 479 GDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 G + + KL R A + R +L G + DAPLII S C +C++ Sbjct: 311 GTLRYTVQSNGV-KLTSVRIDAPRQFDRLIARTILAGMNIDDAPLIIASASACTACSE 367 >UniRef50_Q5DUX5 NADH-ubiquinone oxidoreductase 49 kDa subunit n=3 Tax=Nyctotherus ovalis RepID=NDUS2_NYCOV Length = 412 Score = 259 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 83/395 (21%), Positives = 154/395 (38%), Gaps = 30/395 (7%) Query: 172 NELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYN 231 + + ++ GP H S + + GE + D + ++HRG E+L E Y Sbjct: 19 KDSTRFRILILNFGPQHPASHGVLRLVIVIIGEVVTKLDPHIGFLHRGTERLVEE-HSYM 77 Query: 232 EVTFLSDRVCGICGFAHSTAYTTSVENAM-GIQVPERAQMIRAILLEVERLHSHLLNLGL 290 DR+ + AY +VE A+ ++ R Q++R I E+ R+ +HLL++ Sbjct: 78 NAAVFMDRLDYTTVLTQTHAYCLAVEQALAKSRLCIRTQLLRTIFDELSRILNHLLSIAT 137 Query: 291 ACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGG-IRRDLLKDDMIQTRQLA 349 G + F RE M++ E ++GAR L + L + + + + Sbjct: 138 HALDIGTMAMLFWAFEDRERIMELYEYISGARMHTALYYPNQTLDHILTNELLAKILIFS 197 Query: 350 QQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTR--ADH 407 + + E+ L + R GIG + EI+ + GP+ R++G D R ++ Sbjct: 198 RNSEKTYTEIYIALYNNRVWRLRLCGIGVVSTEISTSTTISGPVARSTGLQLDMRSGENY 257 Query: 408 PFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGG------------ 455 + Y L + + D R +R+ E++ + +I L L Sbjct: 258 QYGYYASLTLRIFLGISGDSFDRFIIRLRELFESTRLIYNSLIELSAYINISVYNMCSYS 317 Query: 456 -------PLMVEGFTYIPH------RFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAAT 502 ++E F Y GF E+ +G + + YR R+ Sbjct: 318 NNPHLKIESLIELFRYSLGEYLLNISLVSGFVESGKGIFGIMLAANNTNRPYRLYIRSPA 377 Query: 503 YANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 Y + L + G+ ++D ++GS+D + DR Sbjct: 378 YMHLQLLPKLGAGHHIADLATLLGSIDVVFGEVDR 412 >UniRef50_C7JEU8 NADH-ubiquinone oxidoreductase 49kDa subunit n=8 Tax=Acetobacter pasteurianus RepID=C7JEU8_ACEP3 Length = 498 Score = 254 bits (649), Expect = 6e-66, Method: Composition-based stats. Identities = 104/498 (20%), Positives = 179/498 (35%), Gaps = 27/498 (5%) Query: 41 YLPEVVEFLYYKQGGWLSVLF-GNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKP 99 ++V+ L + ++ + G D + L + G + + Sbjct: 25 AWRDLVDALKHDDLPFVGLWCDGTD----------VHALFLPDGQP----LAATLALEDG 70 Query: 100 EYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRP 159 YP+++P + ER + D+YG + D R L+ D W Q+ Sbjct: 71 RYPALSPARDISCLYERRIYDLYGAEGMWATDVRPLLDHDVWSSSTPLAEHPGAGGGQKG 130 Query: 160 APTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRG 219 ++ + + + GP + P H L + I A+ Y HRG Sbjct: 131 LIH-----FQPAEHMHQEGDMADGWGPATGGMEPPLHVALAMQEGRIRAAETVTGYAHRG 185 Query: 220 MEKLAETRMG-YNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEV 278 ME R + LS RV AH A+ +VE+A QV +++R LLE+ Sbjct: 186 ME--LRWRNSRVEDACKLSARVASGQSVAHQVAFCLAVEDACKEQVGPEIRLLRVALLEL 243 Query: 279 ERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLL 338 ER+ HL L G +RE ++ A +TG+R + + GG+ Sbjct: 244 ERICHHLFLLADMARLAGARLVASGCMGLREKLIQEAAPITGSRLLMDVCVPGGLSLRHA 303 Query: 339 KDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASG 398 +L + R+ L+ + P + + GIG++ ++ GP RA+G Sbjct: 304 TQMGDMCGRLCEVAERDYPALLALWQEYPGLSMQLAGIGKVTADLLERVGLDGPTARAAG 363 Query: 399 HARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLM 458 D R P GY + Q R + + EV +L M+D + Sbjct: 364 WDCDGRRMMP--GYEGIWRFTSGRQDGTAEDRAMLLLEEVGESLRMLDEVASRIGLT-AG 420 Query: 459 VEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTV 518 + G E P G ++W + ++ + R + A T +L G+ Sbjct: 421 GSVQLSMQDSEGTGMVEGPWGGILYWVRLKE-GRVEQVFARNPSSAALLTFEAILPGHQP 479 Query: 519 SDAPLIIGSLDPCYSCTD 536 D L+ SLD + D Sbjct: 480 DDVALLARSLDINAAALD 497 >UniRef50_D1Y9R2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit n=3 Tax=Propionibacterium acnes RepID=D1Y9R2_PROAC Length = 382 Score = 246 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 92/364 (25%), Positives = 139/364 (38%), Gaps = 18/364 (4%) Query: 182 VPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 241 + +G LH + VD + I + + +HRG EKL E R GY ++ L+ R Sbjct: 29 LDLGHLHPSRPGLVTITTTVDDDVITSSQVNVGNLHRGDEKLFEAR-GYRQIPMLASRHD 87 Query: 242 GICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSH---LLNLGLACHFTGFD 298 F T ++E+AMGI +P R IR +L E R+ SH L +G C G + Sbjct: 88 WTAPFIGETGAAHAIEDAMGITIPTRVAWIRTLLAEFSRITSHFTFLSWVGHHCDDAGLE 147 Query: 299 SGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQE 358 + E + ++ + +G R + IGG+R + + V Sbjct: 148 NAIATAI---ENARRIWQRCSGNRIHPMITRIGGLRIHPESEWQPTLGEWLDDANALVTW 204 Query: 359 LVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPM- 417 L L +T + G+ + + + GP+ RASG DTR Y L Sbjct: 205 LRTALDATVGVR----GVAVIPTNMIDRYGLSGPVSRASGVDLDTRRR--TAVYDELKWP 258 Query: 418 EVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGP----LMVEGFTYIPHRFALGF 473 EV E D SRL N+ + ++ LD LP + P Sbjct: 259 EVVIEPRGDAYSRLATLCNDAAVSSSLCRQILDRLPNLDGPLETRLPTTIKAPRGRTWTT 318 Query: 474 AEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYS 533 EAP G + + + +R R T+AN L +L G V D I SL Sbjct: 319 IEAPWGRAGYLLESRGSTTPWRMALRTPTFANVQVLEAVLPGTRVDDVEATIASLGWTLG 378 Query: 534 CTDR 537 D+ Sbjct: 379 DLDK 382 >UniRef50_D1HPS0 Whole genome shotgun sequence of line PN40024, scaffold_116.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1HPS0_VITVI Length = 441 Score = 241 bits (615), Expect = 5e-62, Method: Composition-based stats. Identities = 73/276 (26%), Positives = 113/276 (40%), Gaps = 26/276 (9%) Query: 253 TTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSM 312 + E IQVP+RA IR I+LE+ R+ SHLL LG G + F FR RE Sbjct: 8 ANAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGVQTPFFYIFRERELVY 67 Query: 313 KMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQR 372 + E TG R + IGG+ DL + + V E +++ P +R Sbjct: 68 DLFEATTGMRMMHNYFRIGGVVVDLPHGWIDKCLDFCDYFLTGVAEYQKLIMRNPIFLER 127 Query: 373 TVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLK 432 G+G + E A ++ GPM++ASG D + Y EV ++ D +SR Sbjct: 128 VEGVGIIGVEEAINWGLSGPMLQASGIQWDLLKVDHYECYDEFDWEVQWQKEGDSLSRYL 187 Query: 433 VRINEVYTALNMIDYGLDNLPGGP---LMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGD 489 VRI E+ + +I L +PGGP L + F D Sbjct: 188 VRIGEMMAFIKIIQQALKGIPGGPYENLEIRCFDRARD-----------------LELND 230 Query: 490 NQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLII 525 + +R ++ N L +++ ++D I+ Sbjct: 231 ----FEYRFI--SFINLQILPQLVKRMKLADIMTIL 260 >UniRef50_Q056K8 Metal (Ni/Fe) hydrogenase, large subunit n=4 Tax=Leptospira RepID=Q056K8_LEPBL Length = 469 Score = 241 bits (614), Expect = 8e-62, Method: Composition-based stats. Identities = 79/377 (20%), Positives = 149/377 (39%), Gaps = 9/377 (2%) Query: 168 YEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETR 227 Y+ + + +GP+H EPGHFR V GE I + D RL + RG+ L + + Sbjct: 93 YKGLKVPIPASHYSHAVGPIHAGVIEPGHFRFIVKGEEIRNLDIRLGFQKRGLIDLIKGK 152 Query: 228 MGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLN 287 + ++ + G A++ A++ E A I VP+ R +LLE+ER+ +H+ + Sbjct: 153 GSKDSFP-YAEAISGDSTIAYAIAFSRIFEEAQKIAVPQELDFARLVLLELERIATHIGD 211 Query: 288 LGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGI--RRDLLKDDMIQT 345 +G G+ R + + E LTG R G G I R+ L ++ + + Sbjct: 212 MGAIAGDVGYYPLQGVCSLQRGVPLGVMEALTGNRFGRGALSPGKIVLRKGLNREKLNEL 271 Query: 346 RQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTR- 404 + + + +V + + +R G + + R +G + + +G +RD R Sbjct: 272 AERIRSVTADVVAHFERAANVSTNRERLQSCGIIRQKQVRHLGFIGMVEKCTGLSRDLRS 331 Query: 405 ADHPFVGYGLLPMEVHSEQ-GCDVISRLKVRINEVYTALNMIDYGLDNLPGGPL----MV 459 + ++ + +E++ + D +R +R E+ + + + L V Sbjct: 332 LEKSYMFSSPISLELNRDHMKGDAWARFYLRCEELKNSGKWLIDAIPKLEAAFSLKFGKV 391 Query: 460 EGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVS 519 + + E RG + + R + NW L +RG + Sbjct: 392 PSKSSVKKGTYYSAVEGWRGPVLVSLDLDATGSIENAYIREVSVPNWHALELAVRGEYIG 451 Query: 520 DAPLIIGSLDPCYSCTD 536 D PL S + Y D Sbjct: 452 DFPLNNKSFNLSYVGVD 468 >UniRef50_Q978D6 Formate hydrogenlyase subunit 3 n=1 Tax=Thermoplasma volcanium RepID=Q978D6_THEVO Length = 389 Score = 237 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 76/392 (19%), Positives = 137/392 (34%), Gaps = 17/392 (4%) Query: 143 DELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVD 202 E + + + GP E F Sbjct: 9 PEGRFVGNTEKYSVYEHILSDQRREIPSESYRNLPGEFTFNYGPATGGLIESVAFDFHTP 68 Query: 203 GENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGI 262 GE I D + R K+ + + L +R+ G +H+ A+ +VE+A+ I Sbjct: 69 GELIKHVDVYPYIKTR---KIKVRGLSPEDALLLVERINGFHAASHAVAFEMAVEDALNI 125 Query: 263 QVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGAR 322 VPE Q R I+LE+ER+ S+L + C GF Q +RE ++ G R Sbjct: 126 DVPEEVQYSRIIMLELERMRSNLEVVKRLCEPAGFGVPQNQIAYLRENIARIITSFAGHR 185 Query: 323 KTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPE 382 + + +GG + + + + + ++ E + + + LL + R G++ Sbjct: 186 YFFSSSYVGGCQFN-----GLVLESVIEDVKEEFEGIFNDLLQSKIFLNRLQNNGKISSS 240 Query: 383 IARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTAL 442 +GP RA+G D R D + Y L + D R VR E+ ++ Sbjct: 241 D-----MLGPAARAAGIEVDARIDEKRLPYSKLGFKPIVFDEPDAFGRFYVRSKEILSSA 295 Query: 443 NMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAAT 502 ++I + P + E+P+GD ++ D K+ + + + Sbjct: 296 DLISKAIRFSGNSP---PAKIEKTNGEGAARVESPQGDLFYYVKIND-GKISDVQISSPS 351 Query: 503 YANWPTLRYMLRGNTVSDAPLIIGSLDPCYSC 534 N + + GN +D S S Sbjct: 352 LLNIEAFKKSMIGNIFTDYHFNWESFGIWVSE 383 >UniRef50_B5ZIZ9 Ni Fe-hydrogenase III large subunit-like protein n=3 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=B5ZIZ9_GLUDA Length = 510 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 111/524 (21%), Positives = 185/524 (35%), Gaps = 37/524 (7%) Query: 21 VVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVLFGNDERKLNGHYAVYYVLSM 80 ++ ++ ++V L L+ D + + L + Sbjct: 15 ALIRRGEAEAGAWRFRLEEEGWRDLVATLARDPLP-FVGLWA-DGQD-------VHALFL 65 Query: 81 EKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDD 140 E G + + V Y ++ PAA ER V D++G + D R + Sbjct: 66 EGGERVLV---ASVAPYGGRYLGLSGVRPAASLPERCVHDLWGFEAMEARDTRPWLDHGV 122 Query: 141 WPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLF 200 W +PL P ++ IGP PGH RL Sbjct: 123 WTAT-WPLGPRPGPVSWPPD--------PPEFRPQPGGGTILGIGPADGGHHTPGHLRLA 173 Query: 201 VDG-ENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENA 259 + G + + A++RL Y HRG+ + L+ R AH +A ++E A Sbjct: 174 LGGRDTVGGAEWRLGYAHRGVMARLCG-LDAPAAVRLAGRAAAGASVAHQSALCRAIEAA 232 Query: 260 MGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILT 319 V + R +L E+ER+ +HL ++ G + + +RE+ M + + Sbjct: 233 SDSMVGTGTERCRVLLAEIERVATHLHDVARTARAAGATALAAECEYLRESVMDLCGRMF 292 Query: 320 GARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLST-------PNMEQR 372 G R L G D + R+V +LV + P +E R Sbjct: 293 GHRLLMDLVRPEGPDGHAGAGDAED-GAAIAAVARQVADLVRGRMRVVGRCRDWPGLEAR 351 Query: 373 TVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLK 432 VG G L AR G RAS D R P GY L ++ + DV +R+ Sbjct: 352 VVGRGVLGEHTARMLGVGGVAGRASAREEDLRRLVP--GYRLGWLDTGVRRAGDVAARID 409 Query: 433 VRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQK 492 +R+ E+ ++ +++ + GPL G +G AE PRG +W + Sbjct: 410 LRLAEIGGSVRILESAGAD---GPLPGTGTPPRRDGEGVGCAEGPRGAVWYWVRM-EGGA 465 Query: 493 LYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 + R A+ L ++L G D +I+ S + D Sbjct: 466 VRAAHVRDPALAHVAALEHVLAGADADDVAMIVRSFGLSAAAAD 509 >UniRef50_UPI000186E11F NADH-ubiquinone oxidoreductase 49 kDa subunit, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186E11F Length = 369 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 65/257 (25%), Positives = 104/257 (40%), Gaps = 1/257 (0%) Query: 136 VLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPG 195 PD E Y + + +N V+ GP H + Sbjct: 43 WFPDRRYFEEYRKDHPIPQPLIDRDTVEKYNPFLDDEPNTEIQNVVLNFGPQHPAAHGVL 102 Query: 196 HFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTS 255 L + GE + D + +HRG EKL E + Y + DR+ + + Y+ + Sbjct: 103 RLILELRGERVAKCDPHIGLLHRGTEKLIEYKT-YTQALPYFDRLDYVSMMCNEQCYSLA 161 Query: 256 VENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMA 315 VE + I+VP RA+ IR + E+ R+ +HL+ +G G + F FF RE M+ Sbjct: 162 VEKLLNIEVPLRAKYIRTMFAELTRILNHLMGIGTHILDVGALTPFFWFFEEREKLMEFY 221 Query: 316 EILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVG 375 E ++GAR GG+ +DL M Q + + ++ DVL + RT Sbjct: 222 ERVSGARMHAAYIRPGGVSQDLPLGLMDDIHQFLTKFGSILDDVDDVLTNNRIWVDRTQN 281 Query: 376 IGRLDPEIARDFSNVGP 392 IG + E A ++ P Sbjct: 282 IGVISAEDALNYGYTVP 298 Score = 92.0 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 76/201 (37%), Gaps = 15/201 (7%) Query: 348 LAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEI---ARDFSNVGPMVRASGHARDTR 404 A+ +R EL +L + + +G L P + R SG R Sbjct: 173 RAKYIRTMFAELTRILNHLMGIGTHILDVGALTPFFWFFEEREKLMEFYERVSG----AR 228 Query: 405 ADHPFVGYGLLPMEVHSEQGCDV---ISRLKVRINEVYTALNMIDYGLDN-----LPGGP 456 ++ G + ++ D+ +++ +++V L +D + Sbjct: 229 MHAAYIRPGGVSQDLPLGLMDDIHQFLTKFGSILDDVDDVLTNNRIWVDRTQNIGVISAE 288 Query: 457 LMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGN 516 + +P EAP+G+ + ++ + K YR + +A +A+ L + +G Sbjct: 289 DALNYGYTVPPGATYTAIEAPKGEFGVYLVSDGSSKPYRCKIKAPGFAHLAALDKIGKGL 348 Query: 517 TVSDAPLIIGSLDPCYSCTDR 537 ++D IIG+LD + DR Sbjct: 349 FLADIVAIIGTLDIVFGEVDR 369 >UniRef50_P21301 NADH-ubiquinone oxidoreductase 49 kDa subunit homolog n=3 Tax=Trypanosomatidae RepID=NDUS2_TRYBB Length = 386 Score = 217 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 69/381 (18%), Positives = 129/381 (33%), Gaps = 28/381 (7%) Query: 180 NVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDR 239 GP H + L+ GE I+ D + Y+HRG EKL E + + DR Sbjct: 11 YRFTFGPQHPAAHGVLCCLLYFCGEFIVYIDCIIGYLHRGTEKLCEYK-SVEQCLPYFDR 69 Query: 240 VCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDS 299 + + + + E + + R +R +++E R + LL + G S Sbjct: 70 LDYVSVCCNEHLLSLCFEYMLRCCLSLRCAFMRLLIVEFTRSFNGLLCISCMVLDLGCLS 129 Query: 300 GFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQEL 359 + F R+ M ++ G R ++ GI D + + L + Sbjct: 130 PLLWSFEERDKLMTFFDLCCGCRMHLAFMVLLGILDDFVFGFVDFLLLLIISCLFVMDCY 189 Query: 360 VDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEV 419 + + R G+ D S G + R+ G D R + Y + + Sbjct: 190 DLLFVGNRLFYLRLRGLSFFDLYDLVFNSLSGVLSRSLGMVWDCRLFSCYELYFMFCYDY 249 Query: 420 HSEQGCDVISRLKVRINEVYTALNMIDY------------GLDNLPGGPLMVEGFTYI-- 465 D RL +R+ ++ +L + L + + +E + Sbjct: 250 CFCFIGDAFDRLFLRLFDMRMSLLICKQCFFVGFFVFGFVCLFDYLYCDITIETIIMLFY 309 Query: 466 ------PHRFALGFAEAPRGD---DIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGN 516 + E P+G+ + + + R R R A + + L LRG Sbjct: 310 SLWCCCLPGISFACVEHPKGEYCLLLCFCV----GLCSRLRLRCADFLHICLLDVCLRGF 365 Query: 517 TVSDAPLIIGSLDPCYSCTDR 537 + D ++G++D + DR Sbjct: 366 LLHDLVAVLGNIDVVFGSVDR 386 >UniRef50_P19496 Coenzyme F420 hydrogenase subunit alpha n=2 Tax=Methanobacteriaceae RepID=FRHA_METTH Length = 405 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 79/396 (19%), Positives = 156/396 (39%), Gaps = 37/396 (9%) Query: 186 PLHVTSDEPGH--FRLFVDGENII-DADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCG 242 + TS + GH + VD E I+ Y RG+EK+ + + R+CG Sbjct: 6 VISPTSRQEGHAELVMEVDDEGIVTKGRYFSITPVRGLEKIVTGKAP-ETAPVIVQRICG 64 Query: 243 ICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFM 302 +C H+ A ++++++ I+VP+ +++R + L ++SH ++ L ++ Sbjct: 65 VCPIPHTLASVEAIDDSLDIEVPKAGRLLRELTLAAHHVNSHAIHHFLIAPDFVPENLMA 124 Query: 303 QFF----RVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQE 358 +R+ + + +++ G IGG+ ++ + + +Q++ +V E Sbjct: 125 DAINSVSEIRKNAQYVVDMVAGEGIHPSDVRIGGMADNITELARKRLYARLKQLKPKVDE 184 Query: 359 LVDVLL---------------------STPNMEQRTV-GIGRLDPEIARDFSNVGPMVR- 395 V++++ S RT + R + + + + + Sbjct: 185 HVELMIGLIEDKGLPKGLGVHNQPTLASHQIYGDRTKFDLDRFTEVMPESWYDDPEIAKR 244 Query: 396 -ASGHA-RDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLP 453 S D R ++ + E+G V+++ R E+ TAL LD L Sbjct: 245 ACSTIPLYDGRNVEVGPRARMVEFQGFKERG--VVAQHVARALEMKTALARAIEILDELD 302 Query: 454 GG-PLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYM 512 P+ + + +G E PRG D+H + +N K+ + T N PT+ Sbjct: 303 TSAPVRADFDERGTGKLGVGAIEGPRGLDVHMAQV-ENGKIQFYSALVPTTWNIPTMGPA 361 Query: 513 LRGNTVSDAPLIIGSLDPCYSCTDRMTVVDVRKKKS 548 G P +I + DPC SC + VVD + Sbjct: 362 TEGFHHEYGPHVIRAYDPCLSCATHVMVVDDEDRSV 397 >UniRef50_A5UMA1 Coenzyme F420-reducing hydrogenase, alpha subunit, FrhA n=3 Tax=Methanobrevibacter RepID=A5UMA1_METS3 Length = 405 Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 70/394 (17%), Positives = 146/394 (37%), Gaps = 33/394 (8%) Query: 186 PLHVTSDEPGH--FRLFVDGENII-DADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCG 242 + TS + GH + VD E I+ Y RG+EK+ + L R+CG Sbjct: 6 VISPTSRQEGHAELVMEVDDEGIVTKGRYLSITPVRGLEKMVAGKNP-ETAPVLCQRICG 64 Query: 243 ICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT----GFD 298 +C H+ A ++++++ I+VP+ +++R L ++S ++ L F Sbjct: 65 VCPIPHTLASVEAIDHSLDIEVPKAGKLLRQATLAAHGVNSAAIHHFLIAPDFVPEEDFT 124 Query: 299 SGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQE 358 + VR+ + ++L G +GG+ R++ + + + ++++ Sbjct: 125 TAVKSVSAVRKNVQYVVDMLAGEGIHPSDIRVGGMARNITSATKDKLIDRLKAFKPDMEK 184 Query: 359 LVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPME 418 V+++ S + G+G +D + ++ G + + + + Sbjct: 185 HVELMKSFIAARELPEGLGVVDAPLLASSASYGNLDEFDYDNFSEVLPEAWYDDPEIGKK 244 Query: 419 VHS-----------------------EQGCDVISRLKVRINEVYTALNMIDYGLDNLPGG 455 + + V+++ R E+ N+ L+ + Sbjct: 245 ACTTIPLINGKNVETGPRARMDKFNGFKDKGVVAQHVARAEEMLNNYNLTIDLLEQIDTS 304 Query: 456 -PLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLR 514 P + + +G E PRG ++H + D+ K+ + T N PT+ Sbjct: 305 APARADYDDRGTGKLGIGVIEGPRGTNVHMANVKDS-KIQFYSAIVPTTWNIPTMGPATE 363 Query: 515 GNTVSDAPLIIGSLDPCYSCTDRMTVVDVRKKKS 548 G +I + DPC SC + VVD K Sbjct: 364 GFHHKYGADVIRAYDPCLSCATHVMVVDDEDKSI 397 >UniRef50_B1I3L1 Nickel-dependent hydrogenase, large subunit n=6 Tax=Clostridia RepID=B1I3L1_DESAP Length = 485 Score = 212 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 70/476 (14%), Positives = 139/476 (29%), Gaps = 112/476 (23%) Query: 186 PLHVTSDEPGHFRLFVD-GENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGIC 244 + + GH ++ V+ N + + + RG+E + + R + ++ R+CG+ Sbjct: 8 VVDPVTRIEGHLKIEVELDGNRVHDAWSTGLLFRGLEIILKGRDP-RDAQHITQRICGVU 66 Query: 245 GFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHF---TGFDSGF 301 +H + +++A GI P+ +++R ++ + SH+L+ G ++ Sbjct: 67 PISHGISSVLCLDDAFGIIPPKNGRILRNLIQGANLIQSHILHFYHLAALDYVKGPETAP 126 Query: 302 M-----------------------QFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLL 338 Q +R + +MA I + + GG+ + Sbjct: 127 FVPRYEGDYRLPPDVTAVVVGHYIQALAMRRKAHEMAAIFGAKIPHTTVFIPGGVTSTVT 186 Query: 339 KDDMIQTRQLAQQMRRE-----VQELVDVLLSTPNMEQRTVGIGRLDPEIARDF------ 387 + + Q +++ + +++ V + + VG L A Sbjct: 187 AEQVEAYAQKLRELISFIDNVYIPDVLAVAGAYEDWFSVGVGTKNLLSYGAYPLTDEKDP 246 Query: 388 --------------------------------------SNVGPMVRASGHARDTR----- 404 P + A D R Sbjct: 247 NGKNLFFTRGVYAGGSFMPMSADHIREHVTHSWYESKAGGKHPFEGETVPAVDKRGGYSW 306 Query: 405 -ADHPFVGY---------GLLPMEVHSEQGCD----VISRLKVRINEVYTALNMIDYGLD 450 + Y + + D V+ R R E + + L+ Sbjct: 307 IKAPRYESYSCEVGALARQWVGRDPQVIGLGDKAFSVMGRHFARAIETTKVAHAMLGWLE 366 Query: 451 NLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANW---- 506 L G G EAPRG HW +N + ++ + N Sbjct: 367 ELEPGQPAFRPHDVPEKAKGFGLTEAPRGALGHWIEI-ENHVIKNYQAVVPSTWNIGPRD 425 Query: 507 -----PTLRYMLRGNTVSD------APLIIGSLDPCYSCTDRMTVVDVRKKKSKVV 551 L L G V+D I+ + DPC +C + V S+ V Sbjct: 426 DKGVRGPLEEALVGTEVADPDNPIELVRIVRAFDPCIACAVHVMEVRGGSGVSRFV 481 >UniRef50_D2PJN4 Formate hydrogenlyase subunit 5 (HycE) n=10 Tax=Sulfolobaceae RepID=D2PJN4_SULIS Length = 391 Score = 211 bits (538), Expect = 4e-53, Method: Composition-based stats. Identities = 68/393 (17%), Positives = 131/393 (33%), Gaps = 16/393 (4%) Query: 143 DELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVD 202 E + K T + N + GP E F + + Sbjct: 10 GEGRKIGKIGDYCLYEKTITEEKCEENKPNITQTYGSFKFIYGPSAGGLLETIKFIITTN 69 Query: 203 GENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGI 262 GE I+ D + Y +R ++ + + ++ +R+ +H+ ++ +VE+++ + Sbjct: 70 GEKILGIDAEV-YKNR---EIVISGLTVDDALLRVERINAPFSASHTISFLLAVEDSLEL 125 Query: 263 QVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGAR 322 + Q+ R +E+ER+ +HL + T + + E ++ + G R Sbjct: 126 EQDYPTQLKRIAEIELERIRNHLFVISRLTETTSLNVPTYHLLHLVEKVNRLIGKMCGHR 185 Query: 323 KTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPE 382 +G+N I G+ D + +E +++ D LL + R G++ E Sbjct: 186 YFFGVNAINGVNCDFGN------LLRIIDITKEFKQIFDGLLESRIFIDRLQENGKIIDE 239 Query: 383 IARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTAL 442 + GP RA+G D R D + Y L Q D R VR E+ + Sbjct: 240 NSI-----GPAARAAGLTYDARKDFKALPYEDLGFRTVITQEADSFGRFLVRGMEIIESA 294 Query: 443 NMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAAT 502 ++ D + L E+P GD ++ N + + Sbjct: 295 KILVELHDEIKNSNNERGKNHKQGGGEGLARVESPSGDLAYYVKLN-NGIIDSVSLLTPS 353 Query: 503 YANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCT 535 N + +D S S Sbjct: 354 QVNLNLFLKSVINTIFTDFQFNWESFGIWVSEI 386 >UniRef50_Q5FU77 Putative uncharacterized protein n=1 Tax=Gluconobacter oxydans RepID=Q5FU77_GLUOX Length = 479 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 94/482 (19%), Positives = 154/482 (31%), Gaps = 46/482 (9%) Query: 57 LSVLFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGER 116 L + +D R YVL +E + Y + + R A WGER Sbjct: 39 LISCWADDARA--------YVLLLEGDRPLL----ASRAVEERRYLAPSSRFAGAEWGER 86 Query: 117 EVRDMYGLIPVGLP-DERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELG 175 D+YG+ + + + W + Sbjct: 87 VAYDLYGVEAMDARGNGAPALDEGGWTSTWPLSSRPGPAAG-----------------GL 129 Query: 176 DKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235 + P P V + + HRG+ R E Sbjct: 130 RPLAGSHLLRPEQTGLSGPLELSFEVLKGKVRSVEVCAGGAHRGVVSRLLGRTP-EEAMP 188 Query: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT 295 L R+ AH A+ +V A G+ + + +LLE+ER+ HL ++ Sbjct: 189 LVSRMTAGGFVAHPLAFARAVAQARGLVPGPGIRDVWMVLLEIERMSLHLFDMARTARGV 248 Query: 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE 355 + RE + +R+ + G R L + Q M+ Sbjct: 249 DAELLATHCDHAREAIARACAEQGVSRRLMDMVACDGFRDGLEIVPLAQAVHA--AMQPR 306 Query: 356 VQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLL 415 + L ++ R G LD +A F+ G RASG + D R G L Sbjct: 307 LAALEEL---HRVFAPRLDGFAVLDVRLAERFAVGGVTGRASGRSMDMRRRE--AGMRLE 361 Query: 416 PMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHR--FALGF 473 + D +R +R+ E+ +L +++ L G + +E P R +G Sbjct: 362 ALRATGSSQGDARAREGLRLAEIRDSLKLLERIL-----GSIGLEDDEPAPDRTDEGIGV 416 Query: 474 AEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYS 533 AE RGD +W + ++ R + P L MLRG VS P +GS+ + Sbjct: 417 AEGARGDVWYWVRLKE-GRIESLHVRDPGVSLLPVLGAMLRGYPVSRVPAALGSIGISPA 475 Query: 534 CT 535 Sbjct: 476 GI 477 >UniRef50_P80489 Coenzyme F420 hydrogenase subunit alpha n=11 Tax=Methanomicrobia RepID=FRHA_METBF Length = 456 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 94/441 (21%), Positives = 158/441 (35%), Gaps = 85/441 (19%) Query: 189 VTSDEPGHFRLFV---DGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICG 245 T+ GH +L + D + D+ RG+EKLA + +V ++ RVCGIC Sbjct: 9 PTTRLEGHSKLTLKVDDQGIVERGDWLSITPVRGIEKLAIGKT-MEQVPKIASRVCGICP 67 Query: 246 FAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLN----------------LG 289 AH+ A T ++E ++G ++P A+++R IL R+HS L+ Sbjct: 68 IAHTLASTEAMEASIGCEIPTDAKLLRTILHAANRIHSIALHNILILPDFYIPGTEKKFN 127 Query: 290 LACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLA 349 L + S + R+RE + + I G IGG+ ++ + LA Sbjct: 128 LFANEQPARSVMARIVRIREIAQTIGAIAGGEAIHPSNPRIGGMYYNVSPRAKQKMADLA 187 Query: 350 QQ----MRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGH------ 399 ++ + +++ + DV+ + N E V ++ + N G M AS + Sbjct: 188 KEGLVLVHEQMEFMFDVIRNMQNREFVEVAGKQIPLPKKLGYHNQGVMATASMYGSSSLD 247 Query: 400 ---ARD---TRADHPFVGYGL---LPMEVHSEQGC------------------------- 425 D + P+ Y + +E S Sbjct: 248 DNPTWDFTRWKETRPWDWYMGEVTIDLEDPSYPIGGTTKIGTKANPQMEACTGVPTYDGQ 307 Query: 426 -------------------DVISRLKVRINEVYTALNMIDYGLDNL-PGGPLMVEGFTYI 465 ++ R E I LDNL G ++ + Sbjct: 308 PVEVGPRARLATFKNFDEKGTFAQHIARQMEYPDCCYTILRCLDNLNTSGKVLADHIPQG 367 Query: 466 PHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLII 525 EAPRG +IH + D K+ + T N+PT L G A +++ Sbjct: 368 DGSMGWAANEAPRGSNIHLARVKD-GKVLWYDMLVPTTWNFPTCSRALTGAPWQIAEMVV 426 Query: 526 GSLDPCYSCTDRMTVVDVRKK 546 + DPC SC M VV+ +K Sbjct: 427 RAYDPCVSCATHMIVVNEEEK 447 >UniRef50_Q00390 Coenzyme F420 hydrogenase subunit alpha n=9 Tax=Euryarchaeota RepID=FRHA_METVO Length = 398 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 75/395 (18%), Positives = 144/395 (36%), Gaps = 45/395 (11%) Query: 187 LHVTSDEPGH--FRLFVDGENII-DADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGI 243 ++ T+ GH L VD + I+ +Y RG EK + R CGI Sbjct: 7 INPTTRHEGHTKLVLKVDDDGIVEKGNYLSVTPVRGFEKFLVGK-PAEFAPIAVSRFCGI 65 Query: 244 CGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLN-LGLACHFTGFDSGFM 302 C AH+T+ ++E+A GI P+ ++R + ++HSH L+ +A F Sbjct: 66 CPIAHATSAVEAIEDACGIVPPKDGLLLRELTGLGNKMHSHPLHEFLIAPDFIPEKDRVE 125 Query: 303 QFFRV---RETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQEL 359 R+ R+T + + + G +GG+ + + + + ++ + +E Sbjct: 126 YITRIQQMRKTGQYIVDTIGGEAIHAPNIKVGGMLKSITPSAVSKIYYKCKEFEKLAKEQ 185 Query: 360 VDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGH----ARDTRADHPFVGYGLL 415 V+ L+ P E RT+ G PE + + G + S + + + H + Y + Sbjct: 186 VEYLI--PIFENRTLVDGTEIPEK-LGYHDFGYLATDSTYGNRENIEQKKVHEYTPYDVY 242 Query: 416 PMEVHSE---------------------------QGCDVISRLKVRINEVYTALNMIDYG 448 EV + + ++ R E + Sbjct: 243 EKEVAVQACQLFQEYNGRLMEVGPRARFAKFHDFKEKGAMAIHIARAYENVIHVKRAMEI 302 Query: 449 LDNLPGGPLMVEGFTYIPHRF--ALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANW 506 ++ L L + LG EA RG + H + + ++ + AT N Sbjct: 303 IEELNVDGLTRAKDPILGDGEKLGLGVHEAARGHNTHQASIDEKGRITYYNAIVATTWNI 362 Query: 507 PTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVV 541 P + + + A ++ + DPC SC + ++ Sbjct: 363 PLIGKAVEAHY-KFAEHVVRAYDPCVSCATQHDIL 396 >UniRef50_UPI000038DF6E Ni,Fe-hydrogenase III large subunit n=1 Tax=Ferroplasma acidarmanus fer1 RepID=UPI000038DF6E Length = 384 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 90/398 (22%), Positives = 149/398 (37%), Gaps = 25/398 (6%) Query: 141 WPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLF 200 + + S +Y + A + GP E +F L Sbjct: 6 FGESSGRYIGRSKNYDIYASSIAPAVENTDQFADKNPGEIYFNYGPSAGGLRESVNFSLL 65 Query: 201 VDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAM 260 GE I D Y R + K+ + +R+ G ++S Y +VE A+ Sbjct: 66 TPGETIRDVIIHPEYKKRDL-KIL--GDPVSRALLKVERINGFHAASNSIGYILAVEEAL 122 Query: 261 GIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTG 320 GI+ E +R + LE+ER+ S++ + C GF Q +RE ++ G Sbjct: 123 GIENSE-LNDMRIVELELERIRSNIDVIKGMCESAGFAVPEKQLLYLREEVARIISRAFG 181 Query: 321 ARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLD 380 R + +N G + D + ++ +++ D LLS+ R G + Sbjct: 182 HRYFFSVNGFGTVSGDFSTI-------KLNAIEKQFRDIYDGLLSSKIFLDRIQENGIVK 234 Query: 381 PEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYT 440 E ++ GP RA+G D R D + Y +E G D SRL VR EV+ Sbjct: 235 NE-----NSTGPAARAAGFKFDARKDSKSLDYR--NFTPVTESGADSFSRLVVRSEEVFE 287 Query: 441 ALNMID-YGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCR 499 A+N+ID YG+ N+ E+P GD ++ +N KL + Sbjct: 288 AINIIDSYGVKNIK----TRTKNELTGSGKGSARIESPAGDIFYYVNI-ENGKLNDIQMV 342 Query: 500 AATYANWPTLRYMLRGNTV-SDAPLIIGSLDPCYSCTD 536 + +Y N R L+ N + +D + S S + Sbjct: 343 SPSYLNLRLFREALKNNNIFTDFFFVWESFGIWISELE 380 >UniRef50_Q60338 Coenzyme F420 hydrogenase subunit alpha n=15 Tax=Euryarchaeota RepID=FRHA_METJA Length = 415 Score = 205 bits (521), Expect = 4e-51, Method: Composition-based stats. Identities = 83/402 (20%), Positives = 137/402 (34%), Gaps = 39/402 (9%) Query: 189 VTSDEPGH--FRLFVDGENIIDADYRLFYVH-RGMEKLAETRMGYNEVTFLSDRVCGICG 245 T+ GH L VD E I++ Y L RG E + + + R+CGIC Sbjct: 14 PTTRHEGHAKLILEVDEEGIVNKAYYLNTTPVRGFETMLKGK-PAEFAPIAVMRICGICQ 72 Query: 246 FAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDS------ 299 H A ++ENA+ +VP+ ++R ++ RLHSH L+ L Sbjct: 73 TTHGIASCEAIENAIDCEVPDDGLLLRELVGIGNRLHSHPLHHLLTIDDFLKPDETDLKI 132 Query: 300 -GFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQE 358 R+R+ + +I+ G +IGG+R ++ + + +Q ++ E Sbjct: 133 ELIKLIQRMRKVGQLVVDIVGGEGIHPPNIVIGGMRTNITERAKSRLYYALRQYEKDAYE 192 Query: 359 LVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPME 418 L + +GI L + D + P Y Sbjct: 193 LYEKYTELIERYLEEIGIPDLGAHEYPYIATHTTYGDRYAINWDDVTEIPAQRYYDDEEA 252 Query: 419 VHS---------------------------EQGCDVISRLKVRINEVYTALNMIDYGLDN 451 + +G + R E A+ LD Sbjct: 253 KQTTTIQIPLYAGVPAEGGPRARMVKFGNFREGGSAMDINIARAQENLGAVYRALEILDE 312 Query: 452 LPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRY 511 L Y F +G EAPR + H + G + K+ +R AA+ N+P + Sbjct: 313 LDLNGKTRAEVEY-KDGFGIGVHEAPRATNTHMAEVGKDGKIKSYRIIAASTWNFPIVEK 371 Query: 512 MLRGNTVSDAPLIIGSLDPCYSCTDRMTVVDVRKKKSKVVPY 553 + G A +I+ + D C SC + V D K+ V Sbjct: 372 AIEGYPQQYAEVIMRAYDICASCATHVIVKDEETKEIIEVRK 413 >UniRef50_A5I2W3 Hydrogenase large subunit n=15 Tax=Clostridium RepID=A5I2W3_CLOBH Length = 471 Score = 204 bits (519), Expect = 8e-51, Method: Composition-based stats. Identities = 76/469 (16%), Positives = 145/469 (30%), Gaps = 103/469 (21%) Query: 184 IGPLHVTSDEPGHFRLFVDGE-NIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCG 242 I + + G + V E NII + RG EK+ E R + + ++R+CG Sbjct: 4 IITIDPITRISGFLEIKVKVEDNIIVDGETSGLLFRGFEKMLEGRPPL-DSIYFTERICG 62 Query: 243 ICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFM 302 IC AH+TA T ++ENA+ I IR ++ E + +HL + + + Sbjct: 63 ICSTAHATASTLALENALNITPSINDIYIRDMMHGFEFIQNHLRQFYCFTVPSYVNLPNI 122 Query: 303 QFFRVRE--------------------------TSMKMAEILTGARKTYGLNLIGGIRRD 336 + +E + + +L G +GG+ + Sbjct: 123 RPIYPQEYSDFRLPKKLNERISSHYEEGIKYSRLAHEALAVLGGKAPHSHGIFVGGVTVN 182 Query: 337 LLKDDMIQTRQLAQQMRRE-----------VQELVDVLLSTPNMEQRTVGIGRLDPEIAR 385 + + + + + + +++ + + + N + G D + Sbjct: 183 IDSYKLTKIQSILKAIKKFVNIYMLEDMNIIAQYYPEYFNLGNTYGNFMSFGVFDKYKDK 242 Query: 386 DFSNVGP----------MVRASG-----------------------HARDTRADHPFVG- 411 + S V P R + D + + + Sbjct: 243 NISYVKPGVIINNKLENFDRDKITENIRYAWYVSDTIIENPIMNNEYTVDLKKEGAYSFV 302 Query: 412 ----YGLLPMEV----------HSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPL 457 Y LPMEV G + R R+ E +N++ + + Sbjct: 303 KAPRYADLPMEVGPLARLKIAGEYTGGNSSMDRNIARVLETKKIINILYNISEKIQLLSN 362 Query: 458 MVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTL-------- 509 + F G + RG H+ +N+ + + T N Sbjct: 363 NQSAYNIPEGAFGEGLIDTTRGALSHFIKI-ENKTIKYYNIITPTAWNISPKDSKGTRGV 421 Query: 510 -RYMLRGNTVSDAP------LIIGSLDPCYSCTDRMTVVDVRKKKSKVV 551 L G+ + + II S DPC SC + + K +V+ Sbjct: 422 GEKSLIGSKIDNIEKPVEIGRIIRSFDPCISCATHLVSNNNEPVKVEVL 470 >UniRef50_Q00404 F420-non-reducing hydrogenase vhc subunit A n=10 Tax=Euryarchaeota RepID=VHCA_METVO Length = 474 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 76/452 (16%), Positives = 147/452 (32%), Gaps = 107/452 (23%) Query: 189 VTSDEPGHFRLFV---DGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICG 245 + GH ++ + D + ++ + V RG EK E R + + R+CGIC Sbjct: 8 PVTRVEGHGKVTLSFDDSGKLDKVNFHVVEV-RGFEKFLEGR-YIEDAPIFTPRICGICQ 65 Query: 246 FAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLAC------------- 292 +H A +V+N G+++PE A M+R ++ + +HSH L+ G+ Sbjct: 66 VSHHLASAKAVDNVFGVKIPETANMLRNLIHQASNVHSHALHFGMLASPDLMFPTTDDAL 125 Query: 293 --HFTGF----DSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTR 346 + G +R+ + + + G ++GG + L +++ + Sbjct: 126 KRNLLGVAGENMDMIKDSIAMRKVGQTIVQKVGGRAIHPVTAIVGGQSKPLTEEERDELL 185 Query: 347 QLAQQMRREVQELVDV---------------LLSTPNMEQRTVGIG----------RLDP 381 L+ + + ++V L + V G ++ Sbjct: 186 TLSDNLVETAERTLNVGKEMVENLKEKDLMNLGYFESYHMGLVNNGAQDIYEGNIRVVNS 245 Query: 382 EIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVI-----SRL----- 431 E ++ P A+ R P+ L + +G SRL Sbjct: 246 EGKIEYEF-DPAEYANYITEGVR---PYSYLKFLALLKRRGEGKGAYRVNTLSRLNVCDK 301 Query: 432 ----------------------------KVRINEVYTALNMIDYGLDN--LPGGPLMVEG 461 R+ E+ ++ +I L++ + + E Sbjct: 302 MPTPIAQKYYEEFVKTYGKPAHQPMLFHYARLIELLSSSELIRKFLEDDKIVDTDVRAEV 361 Query: 462 FTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTL------------ 509 +G EAPRG IH T D + AT N P + Sbjct: 362 DPKNITGEGVGCVEAPRGTLIHHFKTDDRGIINDTNLVVATVQNNPAMDIGVQKVAEKYI 421 Query: 510 --RYMLRGNTVSDAPLIIGSLDPCYSCTDRMT 539 + + + ++ ++I + DPC SC Sbjct: 422 KTPEVAKPHILNHMEMVIRAYDPCLSCATHTI 453 >UniRef50_A6DBU3 Nickel-dependent hydrogenase, large subunit n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DBU3_9PROT Length = 386 Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 62/378 (16%), Positives = 143/378 (37%), Gaps = 35/378 (9%) Query: 192 DEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTA 251 + +++ I + F+ +RG+E+ R + ++ R+CGICG AH A Sbjct: 12 EGEAELKIYQKDGIIDFVEI-FFWQYRGIEQYLVNRHFL-DALVINPRICGICGHAHLLA 69 Query: 252 YTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHF--TGFDSGFMQFFRVRE 309 ++ENA+ +++ ++A+++R I +E + +H+ L + S ++ + + Sbjct: 70 TAKAIENALNLKITKKAEILRDITSGLEIIQNHIKWFYLTLYPTQIKDKSYILKALNIVK 129 Query: 310 TSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNM 369 K+ I+ G + GG+ DL D+I+ + L +++R ++ ++D + ++ Sbjct: 130 KISKIIAIIGGQFPHNSYIIPGGVTCDLTNLDIIKIKNLLKKLREDIYTIIDENGKSHDL 189 Query: 370 EQRTVGIGRLDPEIARDFSNVG------PMVRASGHAR--------DTRADHPFVGYGLL 415 E+ + + + F +G P + + + + G L Sbjct: 190 EKFFENLPKNIGKSLNKFLVLGDNLFFKPNGTFTNVKEFSNNSFFKNVLYNEEYYEVGPL 249 Query: 416 PMEVHSEQGC--------DVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPH 467 + ++ + +R+ R+ E+ +N + +++L + Sbjct: 250 ARNLQNKTINTIYEKYQDSIYTRIFARLYEILLIINYLIKEIEDLDITQKSFLNYKKRTC 309 Query: 468 RFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANW--------PTLRYMLRGNTVS 519 + EAPRG IH +N+K+ + + + L + Sbjct: 310 GSGVSVIEAPRGSLIHKIKI-ENEKIKFYDIVMPSQFYLSNGTKEKPSASQMALIREEIK 368 Query: 520 DAPLIIGSLDPCYSCTDR 537 I D C C Sbjct: 369 FIDTIFKCFDICAVCVTH 386 >UniRef50_C1A0H7 Putative NiFe hydrogenase alpha subunit n=2 Tax=Corynebacterineae RepID=C1A0H7_RHOE4 Length = 434 Score = 201 bits (511), Expect = 6e-50, Method: Composition-based stats. Identities = 68/424 (16%), Positives = 120/424 (28%), Gaps = 73/424 (17%) Query: 189 VTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAH 248 + G V + A+ ++ R E R + E ++ R+CGIC A+ Sbjct: 18 ARVEGEGRLAFTVRHGRVEAAELNIYEPPRFFESFLRGR-DFREPPDITSRICGICPVAY 76 Query: 249 STAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLA--CHFTGFDSGF----- 301 + ++E A G + + +R +L E + SH L++ L F G Sbjct: 77 QVSACNAIEQACGAHLTQPILDLRRLLYCGEWIASHTLHIYLLHAPDFLGASDAIELARI 136 Query: 302 -----MQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREV 356 + +++ + +++ G +GG R ++ + + + Sbjct: 137 ARPDVERGLTLKKAGNAILDMIGGRSIHPVNVRLGGFYRTPTPSELAPLAEQLRWALDDA 196 Query: 357 QELVDVLLSTPNMEQRTVGIGRLDPEIARDF----------------------------- 387 V + + V L + Sbjct: 197 LATVQWVSHFEIPDAE-VDTELLALAQPGRYAIEDGVLTTTSGSSFAPEEFCDHVAERQV 255 Query: 388 --------------SNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKV 433 GP+ R S H+ D V ++ R Sbjct: 256 PHSTALHAHLDGQAYLTGPLARYSLHSADLSETARQAATEAGLGTVCRNPFQSIVVRAVE 315 Query: 434 RINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKL 493 + V AL +I P G +EAPRG H ++ Sbjct: 316 TVFAVDEALRLIREYYR-----PESPYVDMSPRAATGYGVSEAPRGVLYHLYQLDSEGRI 370 Query: 494 YRWRCRAATYANWPTLRYMLRGNT-----VSDAPL------IIGSLDPCYSCTDRMTVVD 542 R T N + LR ++DA L I + DPC SC V Sbjct: 371 LRATIIPPTSQNQAAIENDLRNTLAANLTLTDAELTELCERTIRNYDPCISCATHFLDVT 430 Query: 543 VRKK 546 + +K Sbjct: 431 INRK 434 >UniRef50_Q6L0U1 Formate hydrogenlyase subunit 5 n=1 Tax=Picrophilus torridus RepID=Q6L0U1_PICTO Length = 381 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 78/376 (20%), Positives = 145/376 (38%), Gaps = 22/376 (5%) Query: 159 PAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHR 218 A T + + E NE + GPL EP F + GE I +Y +Y ++ Sbjct: 23 YARTYNYDDIEHENEKRTDFSFNFSYGPLTGGIPEPFRFDINTSGEKI---NYIKYYNYK 79 Query: 219 GMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEV 278 + + + + +R+ G +++ + +SV +A+ I++P +M I +E+ Sbjct: 80 -IRNIKLKGINIKDAIPYIERINGNFAASYTICFLSSVMDALEIEIPYELKMYYIIEMEL 138 Query: 279 ERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLL 338 ER+ +HL L C GF+ ++E ++ +I G R +G+N L Sbjct: 139 ERIRNHLYVLARMCEPAGFNVPANMLMHIKERFSRIIDITFGHRYFFGVNQ--------L 190 Query: 339 KDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASG 398 K + ++ + E+ ++ LL++ R GR+ + GP RA+G Sbjct: 191 KSKRLDIHKMINVYKNEINDIYLNLLNSRLFTDRLQDNGRILDDD-----MTGPAARAAG 245 Query: 399 HARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLM 458 + D+R D Y E+ ++ D +SR VR NE+ ++++I+ G Sbjct: 246 YKYDSRYDFDIFYYNDTGYEIKTDDSGDAMSRFNVRFNEILNSIDIIENA--ENKTGDSC 303 Query: 459 VEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTV 518 L E+P GD + N + + A N + G Sbjct: 304 YNILD--GSGTGLTRVESPSGDVAFYVEL-SNGVIKDLKIHTALERNMKSFLKSSTGTIF 360 Query: 519 SDAPLIIGSLDPCYSC 534 +D S + Sbjct: 361 TDFHFNFESFGLWAAD 376 >UniRef50_Q0W6J7 Coenzyme F420-non-reducing hydrogenase (Methyl viologen-reducing hydrogenase), alpha subunit n=2 Tax=Euryarchaeota RepID=Q0W6J7_UNCMA Length = 471 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 76/445 (17%), Positives = 137/445 (30%), Gaps = 96/445 (21%) Query: 186 PLHVTSDEPGHFRLFVD-GENIIDADYRLFYVH-RGMEKLAETRMGYNEVTFLSDRVCGI 243 + + GH ++ +D +N D RL + RG EK + R E + ++CGI Sbjct: 6 KVSPVTRIEGHAQITIDVDDNNKATDARLNIMEIRGFEKFLQGRA-VEEAPRIVTQICGI 64 Query: 244 CGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHF--------- 294 C +H A +V+ G++ P+ A M+R ++ + +HSH L+ Sbjct: 65 CPVSHHLAAAKAVDECFGVEAPQTANMLRELMQYGQYIHSHSLHFYFLGAPDFVFTPDGN 124 Query: 295 ---------TGFDSGFM-QFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQ 344 G + + R+ ++ E G + GGI + L + D+ + Sbjct: 125 PTQRNVFGIVGANPALATEAVMFRKIGQQIVEATAGRSINPVTYIPGGISKGLTQADVDR 184 Query: 345 TRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFS--------NVGPMVRA 396 +A+Q Q + + P Q I L + M+R Sbjct: 185 LLPMAKQAVTYAQNALALAK--PIFNQYIDAIKLLGEAESMHMGLVKNGNLELYDGMLRL 242 Query: 397 SGHARDTRAD----------------HPFV---GYGLLPME-----------VHSEQGCD 426 G + H ++ + + E ++ D Sbjct: 243 QGKDGSIIKEFKPQDYLQYISEYVYPHSYMKAPYWKEMGWENGMYRVSPLSRINVCDQID 302 Query: 427 -------------VISR--------LKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYI 465 R R+ E+ A L N + Sbjct: 303 TPLANAELQEFRKAFGRPAQMTLLYHYARLIELLYASEKAVELLSNKAITGKELRVPVKA 362 Query: 466 PHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGN--------- 516 +G EAPRG IH T + + + AT N + L+ Sbjct: 363 RAATGVGVIEAPRGTLIHDYDTDEKGMITKANIIVATAHNNKAINLGLKNTAQKIINSPT 422 Query: 517 ----TVSDAPLIIGSLDPCYSCTDR 537 ++ ++I + DPC+SC Sbjct: 423 PEEGILNRMEMVIRAYDPCFSCATH 447 >UniRef50_B1I619 Hydrogen:quinone oxidoreductase n=2 Tax=Clostridiales RepID=B1I619_DESAP Length = 475 Score = 199 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 70/458 (15%), Positives = 142/458 (31%), Gaps = 103/458 (22%) Query: 186 PLHVTSDEPGHFRLFVDGENIIDADYRLF-YVHRGMEKLAETRMGYNEVTFLSDRVCGIC 244 ++ T+ G ++ V E R V RG E + R + +++ R+CGIC Sbjct: 12 VINPTTRTLGASQVEVRVEAGRVIHARCGATVFRGFELILRDRDP-RDAAYITQRICGIC 70 Query: 245 GFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG---- 300 AH+ A + +VE+ G++ P ++R ++ + L +H+ + L Sbjct: 71 PTAHAIAASFAVEDLAGVRPPHNGNLLRNLIFAGDMLQNHIRHFYLFAVPDYVRGPECRP 130 Query: 301 ----------------------FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLL 338 + Q V + +++ +L G + GG + Sbjct: 131 LVPPPTTDYRLPRAKNERLVDSYFQAIDVSRKAYEISALLGGKAPHPHGIIPGGSSVPVT 190 Query: 339 KDDMIQTRQLAQQMRREVQE-----LVDVLLSTPNMEQ------RTVGIGRLDPE----- 382 ++ + + +++ V+E + + P+ + + G + Sbjct: 191 AITVLNLLSIVKSIQKFVEERMLPDVYTLAEHYPDYFEIGVRGADFLNFGLFPLDPEASG 250 Query: 383 -------------IARDFSNVGPMVRASGHARDTRADHP--------------FVGYGLL 415 A D + +R + H + HP + Sbjct: 251 HHFPGAAVIDGRMEAVDSGEISEHLRYT-HFEGEQLAHPARGETRPNPDKPGGYSWCKAP 309 Query: 416 PMEVHSEQGC---------------DVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVE 460 + +G V+ RL R ++ L L G + Sbjct: 310 RYRGRALEGGPLAQLWVRGDYRRGVSVMDRLIARALISREVAGLMRKWLTALRPGQPVFN 369 Query: 461 GFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWP---------TLRY 511 + +G A RG HW + ++ ++ T N+ + Sbjct: 370 RYQVPESGTGVGLTGAMRGGLGHWLEV-EGGRIKHYQIVTPTAWNYSPHDDQGGPGPVEE 428 Query: 512 MLRGNTVSD------APLIIGSLDPCYSCTDRMTVVDV 543 L G V+D ++ S DPC SC + V+D Sbjct: 429 ALIGTPVADAKEPVEIGRVLHSFDPCMSCVAHVIVLDE 466 >UniRef50_Q2LYD7 Nickel-dependent hydrogenase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LYD7_SYNAS Length = 441 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 71/426 (16%), Positives = 147/426 (34%), Gaps = 73/426 (17%) Query: 189 VTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAH 248 + G+ + V I ++++ R E + R + E ++ R+CGIC H Sbjct: 14 TRVEGHGNIVIDVKEGKIDKCEFQVVESPRLFEGMLRGRSIF-EAQHITSRICGICSCGH 72 Query: 249 STAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLAC--HFTG---------- 296 S A + E+A+G+ E+ +R +LL+ E L SH+L++ L G Sbjct: 73 SLASIQAAEDALGVTPTEQTIKLRKLLLDYEFLDSHVLHVYLLAAPDVLGVPSFVPLVKT 132 Query: 297 FDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREV 356 ++ + R+++ + +IL G ++GG + D+ ++ + MR ++ Sbjct: 133 HNAVVRRALRMKKLCNDVCDILVGRHVHPISAIVGGFTKLPRPKDLDAMLEMLESMRDDM 192 Query: 357 QELVDVL--LSTPNMEQRTVGIGRLDPEIARDF--SNVGPM----------VRASGHARD 402 E + + L P+ + T +G + + +VG +A+ D Sbjct: 193 AETLALAKTLQFPDFYRETEYVGLVSDDEEYPLLMGDVGSTDGKRLGKKDYRQATNEFID 252 Query: 403 TRADHPFVGYGLLPM-------------------EVHSEQGC------DVISRLKVRINE 437 R+ F + + +E+ + ++ E Sbjct: 253 PRSSAKFAKWSRDSYLVGALARFNLNSDKLHPTAKAIAEELGLKPICHNPYLNTVAQVVE 312 Query: 438 VYTALNMIDYGLDNLPGGPLMVEG----------FTYIPHRFALGFAEAPRGDDIHWSMT 487 + + +L + + + +G E PRG H +T Sbjct: 313 IVHCYEHAIDLIKDLKKNGINYDEEIVVGVNEQQKIPVRAGDGVGAVEVPRGILFHNYVT 372 Query: 488 GDNQKLYRWRCRAATYANWPTLRYMLRGNT--VSD---------APLIIGSLDPCYSCTD 536 N + + C T N + Y + + D +++ + DPC SC+ Sbjct: 373 DSNGIIEQANCIIPTNQNIANIEYDMMKLLPEILDQTKEEITLKMEMLVRAYDPCISCSA 432 Query: 537 RMTVVD 542 V Sbjct: 433 HYLNVK 438 >UniRef50_Q1WLV6 Mitochondrial NADH:ubiquinone oxidoreductase 49kD subunit 7 (Fragment) n=1 Tax=Chlamydomonas incerta RepID=Q1WLV6_CHLIN Length = 277 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 54/201 (26%), Positives = 90/201 (44%), Gaps = 1/201 (0%) Query: 174 LGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEV 233 N + GP H + L + GE I+ AD + +HRG EKL E + Y + Sbjct: 78 PAKVNNFTLNFGPQHPAAHGVLRLVLEMQGEIIMRADPHIGLLHRGTEKLLEYKT-YLQG 136 Query: 234 TFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACH 293 DR+ + +Y ++E + + VP R Q IR + E+ R+ +HLL + Sbjct: 137 LPYFDRLDYVSMMCMEHSYVLAIEQLLNLSVPLRGQYIRVLFSEITRVLNHLLAITCHSM 196 Query: 294 FTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMR 353 G + F+ F RE + E ++GAR G +GG+ +DL + A+Q Sbjct: 197 DVGALTPFLWAFEEREKLFEFYERVSGARMHAGYFRVGGVSQDLPIGLLRDVYDWARQFG 256 Query: 354 REVQELVDVLLSTPNMEQRTV 374 + E+ ++L ++RTV Sbjct: 257 LRLDEMEELLTGNRIWKERTV 277 >UniRef50_Q58592 F420-non-reducing hydrogenase vhu subunit A n=22 Tax=Methanococcales RepID=VHUA_METJA Length = 418 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 68/405 (16%), Positives = 129/405 (31%), Gaps = 81/405 (20%) Query: 189 VTSDEPGHFRLFV---DGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICG 245 S GH ++ + + D + RG E+ R EV + R+CGIC Sbjct: 8 PLSRLEGHGKVTITLDENGKPKDVKLHI-TALRGFEQFVVGR-PAEEVPRIVPRICGICQ 65 Query: 246 FAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLAC------------- 292 AH A +++ A G+++PE A+ +R ++ +HSH L+ Sbjct: 66 TAHHLASVKAIDAAWGVEIPEPAKKLRELMHIGNMIHSHALHFYFLAAPDFVLGPDADPA 125 Query: 293 --HFTG----FDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTR 346 + G Q +R+ K+ E + G + GG + L +++ + Sbjct: 126 IRNIVGVIDKAPDVAKQAIALRKFGQKIVEAVGGKAIHPVTGIPGGQAKRLTEEERDELL 185 Query: 347 QLAQQMRREVQELVDVLLS-TPNMEQRTVGIGRLD------------------------- 380 + A QM + V+++ ++ +G +D Sbjct: 186 KDADQMIEYAKNGVELIKQLNEQYMEQIKTLGVIDTYYLGLVKDGKHNFYDDTLRFLSPD 245 Query: 381 --------PEIARDF---------SNVGPMVRASGHARDTRADHPFVG------------ 411 PE ++ P + G+ P Sbjct: 246 GKEKVEFKPEEYLNYIGEYVVPYNYVKHPYYKKVGYPEGVYRVGPLAMLNVCDEMETPLA 305 Query: 412 --YGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRF 469 Y +E+ ++ R+ E+ A L++ ++ Sbjct: 306 EEYRKEFLEIFGFPANQSLAYNHARLIELVEACEKAKILLEDNDITSDDIKADVEPKAGN 365 Query: 470 ALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLR 514 +G APRG IH T +N + + AT N PT+ ++ Sbjct: 366 GVGVVYAPRGVLIHNYETDENGIVVKANMIVATTHNVPTMEKAIQ 410 >UniRef50_B1L3Q0 Coenzyme F420-reducing hydrogenase, alpha subunit n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L3Q0_KORCO Length = 427 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 86/426 (20%), Positives = 143/426 (33%), Gaps = 79/426 (18%) Query: 189 VTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAH 248 + G + V+G+ + A R++ R E++ + Y EV ++ R+C IC + Sbjct: 10 ARVEGHGDIEVVVEGDAVKRAVLRIYEGPRFFERILIGKSYY-EVPDITARICSICPDPY 68 Query: 249 STAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLAC--HFTGFDSGF----- 301 A + ++E AMGI+V + + +R + L + +HSH L+L F G+ Sbjct: 69 QVASSRAIEKAMGIRVDRQVEALRELQLISDVIHSHALHLFFLALPDFLGYKDAIGMAAQ 128 Query: 302 -----MQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREV 356 +V+ + E++TG + GG + +D+ + R+ + Sbjct: 129 YPETVKLALKVKRAGNAIKEVITGRTVHGVVTKPGGYTKVPRAEDLERLRKQLESSIDGA 188 Query: 357 QELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLP 416 +E + V S E + + + G + S HP Y L Sbjct: 189 REAIRVFSSLKMPEYSLDDNLYIAVDPGEHYGYSGEYLLVSD-----GTRHPVEKYMDLT 243 Query: 417 MEVHSEQ--------GCDVI------------SRLKVRINEVYTALN------------- 443 EV E RL E Y +L Sbjct: 244 NEVTVEHSSAKHSSYKGSSFMTGALARLLLNEKRLYGEAKESYESLRDKIDPRNPFSNNM 303 Query: 444 ---------------MIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTG 488 +ID LD LMVE + EAPRG H Sbjct: 304 AQAIELLYSVQRAMDIIDGLLDEGIKDKLMVE--VKPRAGEGIAVVEAPRGLLYHHYKLD 361 Query: 489 DNQKLYRWRCRAATYANWPTLRYMLRGNT-----VSD------APLIIGSLDPCYSCTDR 537 DN K+ T N + LR +SD +++ + DPC SC+ Sbjct: 362 DNGKVVFANLVTPTAQNAANMDKYLRIAVRNLKDLSDDELKLKLEMLVRAYDPCISCSVH 421 Query: 538 MTVVDV 543 +T + V Sbjct: 422 LTRIGV 427 >UniRef50_Q50783 F420-non-reducing hydrogenase subunit A n=6 Tax=Methanobacteriales RepID=MVHA_METTH Length = 472 Score = 198 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 73/464 (15%), Positives = 125/464 (26%), Gaps = 98/464 (21%) Query: 186 PLHVTSDEPGHFRLFV---DGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCG 242 + + GH ++ V D N+ D + RG EK + R E + R+CG Sbjct: 5 TMEPVTRIEGHAKITVHLDDAGNVEDTRLHV-MEFRGFEKFLQGR-PIEEAPRIVPRICG 62 Query: 243 ICGFAHSTAYTTSVENAMGIQ---VPERAQMIRAILLEVERLHSHLLNLGLACHF----- 294 IC H A +V+ G + V A +R I+ +HSH L+ Sbjct: 63 ICDVQHHLAAAKAVDACFGFEPEDVLPAAYKMREIMNWGSYMHSHGLHFYFLAAPDFIAG 122 Query: 295 ------------TGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDM 342 +Q +R+ ++++ G + GGI +L + Sbjct: 123 KDRKTRNVFQIIKDAPDIALQAIELRKNALELVRATGGRPIHPTSSTPGGISTELDDETQ 182 Query: 343 IQTRQL-----------AQQMRREVQELVDVLL---STPNMEQRTVGIGRLDPEI----- 383 + + +E +D++ + V G D Sbjct: 183 KDLLKKAQRNVELAEATLELAVPIFEENIDLVNSLGNIETYHTGLVKDGVWDVYDGIVRI 242 Query: 384 ----------------------------------ARDFSNVGPMVRAS-----GHARDTR 404 +D + R S A Sbjct: 243 KDKEGNMFREFKPADYADTIAEHVKPYSWLKFPYIKDLGYPDGVYRVSPLSRLNVADKMP 302 Query: 405 ADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTY 464 P + + R+ E+ L+ G Sbjct: 303 DAAPKAQEHFKEFRENFGYAQQTLLYHWARLIELLACAECAADALEGDLSGE-KFPDSLE 361 Query: 465 IPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYML---------RG 515 +G EAPRG H +N + + AT N P + + G Sbjct: 362 RQAGDGVGIVEAPRGTLTHHYTCDENGLITKANIVVATIQNNPAMEMGIQKVAQDYIKPG 421 Query: 516 NTVSD-----APLIIGSLDPCYSCTDRMTVVDVRKKKSKVVPYK 554 V D ++I + DPC SC +R +V + Sbjct: 422 VEVDDKIFNLMEMVIRAYDPCLSCATHTIDSQMRLATLEVYDSE 465 >UniRef50_B5YHQ8 Hydrogenase/sulfur reductase, alpha subunit n=2 Tax=Bacteria RepID=B5YHQ8_THEYD Length = 442 Score = 197 bits (502), Expect = 7e-49, Method: Composition-based stats. Identities = 73/434 (16%), Positives = 146/434 (33%), Gaps = 79/434 (18%) Query: 189 VTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAH 248 + G+ + V + + R E R Y E ++ R+CGIC H Sbjct: 13 TRVEGHGNIVVEVKDGKLEICRLEIVESPRFFEAFLRGRSIY-EAPHITCRICGICSCGH 71 Query: 249 STAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLA--CHFTG---------- 296 + A + E+A+GI+ E+ ++R +LL E+L SH+L++ L G Sbjct: 72 TLASIQAAEDALGIKPTEQTVLLRKLLLHYEQLDSHILHIYLLVAPDLVGVPSFVPLIKS 131 Query: 297 FDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREV 356 ++ R++ ++ +IL G +IGG + + D+ + + +++++ Sbjct: 132 HPDVVIRALRMKRLCNELCDILVGRHVHPISAVIGGFTKLPSEIDLEEMHKKLLALQKDI 191 Query: 357 QELVDVLLS--TPNMEQRTVGIGRLDPEIARD--FSNVGPM--VRASGHARDTRADH--- 407 + +++ P E+ T I ++ E + ++G R S + + Sbjct: 192 EVTIELFKDLKFPEFERDTEYIALVNDEDEYPLLYGDIGSTDGYRVSKYEYKNVTNEFIV 251 Query: 408 PFVGYGLLPMEVHSEQGCDVISRLKVRINE------------------------------ 437 P+ S ++R + + Sbjct: 252 PYASAKRTKWHRESYAVG-ALARFNLNYEKLHPKAKEAAATLGLKPKCINPYLNTVAQIV 310 Query: 438 -----VYTALNMIDYG------LDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSM 486 V A+ +I+ D + + G +G E PRG IH Sbjct: 311 ECVHCVEDAIRIIETLWQKGINYDEVVVPDINEHGLLPQRAGEGVGAVEVPRGLLIHHYE 370 Query: 487 TGDNQKLYRWRCRAATYANWPTLRY-MLRGNTVSDA------------PLIIGSLDPCYS 533 + C T N + ML+ V + +++ + DPC S Sbjct: 371 CDERGIFRNANCIIPTNQNTHNIELDMLK--LVPEIINQSPEEIRLSLEMLVRAYDPCIS 428 Query: 534 CTDRMTVVDVRKKK 547 C+ M V + + Sbjct: 429 CSVHMVEVKLGDRD 442 >UniRef50_C4PZT7 NADH-ubiquinone oxidoreductase fe-s protein 2 (Ndufs2), putative n=1 Tax=Schistosoma mansoni RepID=C4PZT7_SCHMA Length = 538 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 49/244 (20%), Positives = 91/244 (37%), Gaps = 37/244 (15%) Query: 311 SMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNME 370 +++ L G + IR D + + + + + ++ D+L P Sbjct: 91 VLRLIMELDGEKI---------IRLDPHIGLLHRGTEKLIEY-KTYTQISDLLFDNPIWI 140 Query: 371 QRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISR 430 RT +G + E A D G M+R SG D R P+ Y + +V D R Sbjct: 141 TRTKDVGIVSAEDALDLGFSGVMLRGSGIKWDLRKTQPYDAYEDMDFDVPVGVHGDCYDR 200 Query: 431 LKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTY-------------------------- 464 VR+ E+ +L +++ L+ +P G + V+ Sbjct: 201 FIVRMEEMRQSLRIMEQCLNKMPKGEIKVDDAKICPPKRAEMKSSMEALIHHFKLFSEGY 260 Query: 465 -IPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPL 523 +P EAP+G+ + ++ K YR + +A +A+ + + RG + D Sbjct: 261 LVPPGSTYTAVEAPKGEFGVYLVSDGTNKPYRCKIKAPGFAHMAAIDKLCRGFMLPDVVA 320 Query: 524 IIGS 527 +I S Sbjct: 321 VIVS 324 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 3/101 (2%) Query: 134 RLVLPDDWPDELY---PLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVT 190 + W + L++ + A TT F + ++ + GP H Sbjct: 28 PIRCCSRWVPDKKFMDELKESLYNPAVVKANTTVQPIDFFNVSHQEVQSVHLNFGPQHPA 87 Query: 191 SDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYN 231 + + +DGE II D + +HRG EKL E + Sbjct: 88 AHGVLRLIMELDGEKIIRLDPHIGLLHRGTEKLIEYKTYTQ 128 >UniRef50_UPI0001C41F73 methyl viologen-reducing hydrogenase alpha subunit MvhA n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41F73 Length = 470 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 76/467 (16%), Positives = 127/467 (27%), Gaps = 107/467 (22%) Query: 189 VTSDEPGHFRLFV---DGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICG 245 + GH ++ V + N+ D + RG EK + R EV + R+CGIC Sbjct: 3 PVTRIEGHAKITVHLDEAGNVEDTRLHV-MEFRGFEKFLQGR-PAEEVPRIVPRICGICD 60 Query: 246 FAHSTAYTTSVENAMGI---QVPERAQMIRAILLEVERLHSHLLNLGLACHF-------- 294 H A +V+ G + A +R ++ +HSH L+ Sbjct: 61 VQHHLAAAKAVDQIYGFNDDDILPAAYKMRELMNWGSYMHSHALHFYFLAAPDLVVPNGT 120 Query: 295 ----------TGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQ 344 +Q ++R + + G + GGI +L ++ Sbjct: 121 RKTRNVFQIIQDMPEVALQAIKIRRNGLDIVSATGGRPIHPTSSTPGGISTELDEETQAD 180 Query: 345 TRQLAQQ-----------MRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPM 393 A++ ++E +D++ + T G + + D+ Sbjct: 181 LLAKAKENVELAQATIELAVPILEEKIDLVKTLGYFGD-TRHCGIVTKDG--DWDVYNGK 237 Query: 394 VRAS-----------GHARDTRADHPFVGYGLLPMEVHSE---QGC-------------- 425 VR Y L E Sbjct: 238 VRIKDKDGSIYTEYRNLEYKDIVAEHVKPYSWLKFPYIKELGYPEGIYRVAPLSRINVCD 297 Query: 426 --------------DVISR----------LKVRINEVYTALNMIDYGLDNLPGGPLMVEG 461 D R R+ E+ + M L+ G Sbjct: 298 KMPDAAPLAQGALEDFRDRFGYAQYPLLFHWARLIELLASAEMAVDALEQDLSGD-KFPD 356 Query: 462 FTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYML-------- 513 G EA RG IH T D + + AT N P + + Sbjct: 357 ALERTAGEGAGIVEAARGTLIHHYTTDDEGLITQANIIVATIQNNPAMEMGIQQVAKDYI 416 Query: 514 -RGNTVSD-----APLIIGSLDPCYSCTDRMTVVDVRKKKSKVVPYK 554 G V D ++I + DPC SC +R +V + Sbjct: 417 KPGVEVDDKIFNLMEMVIRAHDPCLSCATHTMDSQMRLATVEVYDSE 463 >UniRef50_UPI0001C16F92 Nickel-dependent hydrogenase, large subunit n=2 Tax=Nostocaceae RepID=UPI0001C16F92 Length = 482 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 77/454 (16%), Positives = 142/454 (31%), Gaps = 103/454 (22%) Query: 186 PLHVTSDEPGHFRLFV--DGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGI 243 + + GH ++ + D E +D RG EK R + E+ ++ R+CGI Sbjct: 5 VIDPVTRIEGHAKISIYLDDEGHVDDARFHVTEFRGFEKFCVGR-PFPEMPGITARICGI 63 Query: 244 CGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLAC---HFTGFDS- 299 C +H A + + + + +PE A +R ++ + + SH L+ G DS Sbjct: 64 CPVSHLLASAKTGDKILSVTIPEVATKLRRLMNLGQIIQSHALSFFHLSAPDLLLGMDSE 123 Query: 300 ---------------GFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQ 344 R+R+ ++ E+L G + + GG+ L ++ Sbjct: 124 PAKRNVFGLIGVDPELARGGIRLRQFGQEIIELLGGKKIHPAWAVPGGVSDPLTTENRSH 183 Query: 345 TRQLAQQ-----------MRREVQELVDV-------------------LLSTPNMEQRTV 374 + + ++ ++ L T + R V Sbjct: 184 IQNRIPEAKSTVLNAIALFKKLLENYQKEAQTFGNFPSLFMGLVTPQGLWETYDGHLRFV 243 Query: 375 GIG---RLDPEIARDFS------------NVGPMVRASGHARD---TRADH--------- 407 G D A ++ P R G+ R D Sbjct: 244 DSGGNIVADKLEADNYHEFIGEAVQEDSYLKSPYYRPLGYPDSKDHCRLDSGMYRVGPLA 303 Query: 408 ----------PFVGYGLLPMEVH-SEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGP 456 P L + S R+ E+ ++ I+ LD+ Sbjct: 304 RLNICSQIGTPLADQELREFRTYGSGTVKSSFFYHYARLIEILASVEHIEILLDDPDILS 363 Query: 457 LMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTL------- 509 + I A+G +EAPRG H +N + + AT N + Sbjct: 364 TRLRAAAGINRLEAVGVSEAPRGTLFHHYRIDENGLIQKVNLIIATGQNNLAMNRTVAQI 423 Query: 510 -RYMLRGNTVSD-----APLIIGSLDPCYSCTDR 537 R+ ++G+ + + I + DPC SC+ Sbjct: 424 ARHFIQGSQIQEGMLNRVEAGIRAFDPCLSCSTH 457 >UniRef50_A8ZNU6 Hydrogenase large subunit HoxH n=62 Tax=Bacteria RepID=A8ZNU6_ACAM1 Length = 494 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 77/456 (16%), Positives = 148/456 (32%), Gaps = 108/456 (23%) Query: 187 LHVTSDEPGHFRLFV---DGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGI 243 + + GH ++ + D + DA + + RG EK E R + E+ ++ R+CGI Sbjct: 7 IDPVTRIEGHAKISIYLDDAGEVTDARFHV-TEFRGFEKFCEGRPFW-EMPGITPRICGI 64 Query: 244 CGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLAC---HFTGFDSG 300 C +H A + + + + +P A+ +R ++ + + SH L+ G++S Sbjct: 65 CPVSHLLASAKAGDQILAVHIPPAAEKLRRLMNLGQIIQSHALSFFHLSSPDLLLGWESD 124 Query: 301 FMQ----------------FFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQ 344 Q R+R+ ++ + L G + + GG+R L Q Sbjct: 125 PAQRNVFGLMAAEPDLARSGIRLRQFGQEVIQHLGGQKIHPAWAVPGGVRSALTDQGREQ 184 Query: 345 TRQLAQQMR----REVQELVDVLLSTPNMEQRTVGI------GRLDPEIARDF------- 387 R ++R ++ D+L + E R G G ++P+ + Sbjct: 185 IRAGLLEVRSTALSTLKRFKDLLEDHAS-EARIFGNFPSLFMGLINPKGLWEHYQGCLRF 243 Query: 388 --SNVGPMVRASG-----------HARDTRADHPF---VGYGLLPMEVHSEQGC----DV 427 S + D+ P+ +GY + + Sbjct: 244 VDSVGNIIADHLDPSQFQSFIGEAVQTDSYLKSPYYRPLGYPDQTPGLCRLESGMYRVGP 303 Query: 428 ISRLKV---------------------------------RINEVYTALNMIDYGLDNLPG 454 ++RL V R+ E+ + I+ +++ Sbjct: 304 LARLNVCDRMGTPLADQELQEFRQRGNGTVTSSFYYHYARLIEILACIERIEQQIEDPGL 363 Query: 455 GPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTL----- 509 + + +G +EAPRG H L AT N + Sbjct: 364 CQPPLRAQADVNQLEGVGVSEAPRGTLFHHYQVDATGLLQSVNLIIATGQNNLAMNRTVA 423 Query: 510 ---RYMLRGNTVSD-----APLIIGSLDPCYSCTDR 537 R+ L G + + I + DPC SC+ Sbjct: 424 QIARHYLHGPDIPESMLNRVEAGIRAFDPCLSCSTH 459 >UniRef50_C7NU24 Nickel-dependent hydrogenase large subunit n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NU24_HALUD Length = 472 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 73/447 (16%), Positives = 128/447 (28%), Gaps = 94/447 (21%) Query: 186 PLHVTSDEPGH--FRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGI 243 + + GH + +D E ++ RG E+ E R + E+ ++ R+CGI Sbjct: 6 VIDPVTRVEGHGKITIHLDDEGSVEDAQFHVTEFRGFEEFVEGRPIW-EMPEITARICGI 64 Query: 244 CGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLAC---HFTGFDS- 299 C +H A + ++ M VPE A +R ++ + L SH L+ G+D+ Sbjct: 65 CPVSHQLAAAKAADDVMDADVPESAHKLRELMHMGQVLQSHALSFFYLSSPDLVLGYDAD 124 Query: 300 ---------------GFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQ 344 + +R + L + + GG+ L ++D Sbjct: 125 PADRNIEGVLAENPQLAERGIDLRSFGQNVIAALGEKKVHPDFAVAGGVSNTLDREDGED 184 Query: 345 TRQLAQQMRREVQELVDVLLSTPNMEQR----------------TVGIGRLDPEIARDF- 387 + +Q + V+E +D+L T G + Sbjct: 185 LLEESQPLAGYVRETIDLLKDIFEEMDDDTLDYATYPTGYMGLVTEEGGLEHYDGDIRLV 244 Query: 388 ---------------------------SNVGPMVRASGHARDTRADHPFVGYGLLP---- 416 P + G P + Sbjct: 245 DESGDQLEEIDDGAYRDIIAERSKEWSYLKFPYYKDRGFEDGQYRVGPLARLNAVDDVRT 304 Query: 417 -------MEVHSEQGCDVISR----LKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYI 465 +E V R R+ E+ + I L++ + T Sbjct: 305 PQAHEEWVEFMDAAEGAVHERSTYYHWARLIEMLYCVERIQELLEDDDVYDGITNIPTKP 364 Query: 466 PHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTL--------RYMLRGNT 517 +G EAPRG IH D K+ AT N + + G Sbjct: 365 KAGTGVGVIEAPRGTLIHEYTIDDGGKVENANFIVATTHNNGAMNKGVTSAAETFIDGPE 424 Query: 518 VSD-----APLIIGSLDPCYSCTDRMT 539 + + +I DPC SC+ Sbjct: 425 IPEGILNKMESVIRCYDPCLSCSTHAI 451 >UniRef50_O66988 Hydrogenase large subunit n=1 Tax=Aquifex aeolicus RepID=O66988_AQUAE Length = 416 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 73/417 (17%), Positives = 148/417 (35%), Gaps = 77/417 (18%) Query: 189 VTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAH 248 + L + I DA FY RG+EK+ R + + ++ R+CGICG AH Sbjct: 9 TRVEGEASLNLVWERGVIKDAKIS-FYSTRGIEKVLRER-PFMDALVINPRICGICGHAH 66 Query: 249 STAYTTSVENAMGI-QVPERAQMIRAILLEVERLHSHLLNLGL--ACHFTGFDSGF---- 301 A ++ENA+GI ++PE+A++ R + E + +H+ L F F Sbjct: 67 LIATVRAIENAIGIKEIPEKAKITRLVTQITEMVQNHVKWFYLFVMPDFLKFKESLSQFE 126 Query: 302 -------MQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQ--- 351 + + +K+ + G + GGI + + ++++ L ++ Sbjct: 127 PFKGERWKRAVQFSSQIVKIIALFGGQWPHSSYAVPGGITSNFSEREVLKALNLVKEGKT 186 Query: 352 -MRREVQELVDVLLS---------------------------TPNMEQR-----TVGIGR 378 + V E +++ L+ P+ ++ + Sbjct: 187 FFEKNVSEDLELFLNLCEEFNLLSIGKAYNRFLSGGGLAYCFNPSYKKGKGKVCKFNVRY 246 Query: 379 LDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHS---EQGCDVIS-RLKVR 434 + A D+S P+ R G + P + + + D + R+ R Sbjct: 247 VQELEAADYSKANPV-RYKGLPYE---TGPLARELISKNPLVLKLYKNYGDSYAVRVAAR 302 Query: 435 INEVYT----ALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDN 490 + E+ ++ +++L + E + G EA RG IH + + Sbjct: 303 LAEIKDLLEILEKLLKELMNHLEEPSCLWEDRSD-ESGEGFGVVEAARGTLIHRVVI-EK 360 Query: 491 QKLYRWRCRAATYANWPT--------LRYMLRG--NTVSDAPLIIGSLDPCYSCTDR 537 K+ ++ + N + G + + A +++ S D C CT + Sbjct: 361 GKIKDYKVITPSQWNLGPRCKKYLGVAEKAIVGLDSELK-AQMVLRSFDLCSVCTTK 416 >UniRef50_B8HJR0 Coenzyme F420 hydrogenase n=14 Tax=Bacteria RepID=B8HJR0_CYAP4 Length = 433 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 72/427 (16%), Positives = 137/427 (32%), Gaps = 74/427 (17%) Query: 189 VTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAH 248 + G + + + + ++F R E R Y+E ++ R+CGIC A+ Sbjct: 12 GRVEGEGAMYVQIRDNRVREVKLKIFEPPRFFEAFLRGR-QYSEAPDITSRICGICPIAY 70 Query: 249 STAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLA--CHFTGFDSGFM---- 302 + ++E+ +G+ V + +R +L E + SH L++ + F G+DS Sbjct: 71 MMSAVQAMEDILGVAVAGGMRDLRRLLYCGEWIESHALHIFMLHAPDFLGYDSVIAMAGD 130 Query: 303 ------QFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQ----- 351 + R+++ ++ ++ G +GG + + D+ + Sbjct: 131 YPDLVQRGLRLKKIGNQIISLIGGRAIHPINVRVGGFYKLPSRQDLHSLVADLEWAVAAA 190 Query: 352 -----------MRREVQELVDVLLST----PNMEQRTVGIGRLDPEIARDFS-------- 388 + V L P + R V LD I + + Sbjct: 191 AETVRWVAAFPFPDFAPDYEFVALHHGEEYPMNQGRLVSNKGLDIPIHQFYDQIEEQHRP 250 Query: 389 ---------------NVGPMVRASGHARDTRADHPFVGYGLLPM-EVHSEQGCDVISRLK 432 +GP+ R + + M + +I+R Sbjct: 251 HSTALQAQLKERGNYFLGPLARF-NLNFEQLTPRTQAVAQSVGMTPLCRNPFKSIIARSL 309 Query: 433 VRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQK 492 + AL +ID +P +V+ G EAPRG H+ Sbjct: 310 EVMFAAEEALRLID---SYIPPAQSVVDYTVR--AGCGHGCTEAPRGSLYHYYQIDQQGD 364 Query: 493 LYRWRCRAATYANWPTLRYML-----------RGNTVSDAPLIIGSLDPCYSCTDRMTVV 541 + + T N T+ L S +I + DPC SC+ + Sbjct: 365 ILAAQIAPPTAQNQSTIEQDLWQFVEEHIDLPENQLRSQCEQVIRNYDPCISCSTHFLKL 424 Query: 542 DVRKKKS 548 +V +K S Sbjct: 425 EVDRKSS 431 >UniRef50_B5IEA3 Nickel-dependent hydrogenase superfamily n=3 Tax=Aciduliprofundum boonei T469 RepID=B5IEA3_9EURY Length = 421 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 78/409 (19%), Positives = 150/409 (36%), Gaps = 60/409 (14%) Query: 191 SDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHST 250 + + + ++ EN+ + + R E + Y + L+ R+CGIC AH Sbjct: 14 IEGHANLTIEIEDENLKRVIFGVHEGSRYFEAFMVGK-SYKYLPELAGRICGICTVAHEI 72 Query: 251 AYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT------------GFD 298 A +VE+A+GI++ E + +R ++L + SH+L+L Sbjct: 73 ASVRAVEDALGIEISEEVEDLRKLMLISSHIQSHILHLYFLALPDYRNVESIIELANKNV 132 Query: 299 SGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQE 358 + + F ++E S M E++ G + G + + + K+ + + + +++ + + Sbjct: 133 NLVKKAFELKEASNYMTELIGGRAVQPCTIVPGKVSKRIGKETIERYIKKMKEIYPFLLD 192 Query: 359 LVDVLLS--TPNMEQRTVGIGRLD--------PEIARDFSNVGP----------MVRASG 398 ++ LS P E+ + + D EIA S P +V S Sbjct: 193 TAELFLSLEYPKYERESEYVALWDGHSIPLYKGEIATLSSIFDPHQYQEHIREWVVEYSS 252 Query: 399 HARDTRADHPFVGYGLLPMEVH---SEQGCDVISRLKVR-------INEVYTALNMIDYG 448 ++ L + ++ E+ ++ R VR + AL + + Sbjct: 253 AKHSLIEGRDYMVGALARLNINRNLREEARELAERYGVRFPSNRIAWINLAQALENVHFA 312 Query: 449 LDNLPGGPLMVEGFT-----YIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATY 503 L+ + + E +G EAPRG IH N K T Sbjct: 313 LEAMEIAENLKEYDPHKINIPRVSGEGVGVIEAPRGLLIHHYKI-KNGKCTYVNIITPTA 371 Query: 504 ANWPTLRYMLRGNTVS-----------DAPLIIGSLDPCYSCTDRMTVV 541 N + +L+G +A II + DPC SC+ +T + Sbjct: 372 MNTENIERILKGYISQIVSKNDEYIKMEAEKIIRAYDPCISCSVHVTRI 420 >UniRef50_B5EQ52 Nickel-dependent hydrogenase large subunit n=10 Tax=Proteobacteria RepID=B5EQ52_ACIF5 Length = 432 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 78/423 (18%), Positives = 129/423 (30%), Gaps = 64/423 (15%) Query: 186 PLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICG 245 P+ + G L V I R+F R EK E R Y E+ + R+CGIC Sbjct: 12 PVLARVEGEGALDLEVHDGRIQTLRLRIFEPPRLFEKFLEGR-EYQEIPDMVARICGICP 70 Query: 246 FAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLAC--HFTGFDSG--- 300 A+ + ++E G + +R + E + SH L++ L F G+ S Sbjct: 71 VAYQMSAVHAIEGIFGQAPGPWVRAMRRVFYCGEWIQSHSLHIHLLAAPDFLGYSSASEM 130 Query: 301 -------FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMR 353 + ++ ++ G +GG R + + R+ + Sbjct: 131 ARAHPDIVRRGLALQALGNEIIRFFGGRSVHPVGARVGGFHRAPSRAEAAVLREQVRAAL 190 Query: 354 REVQELVDV--LLSTPNMEQRTVGIGRLDPEI--------ARDFSNVGPMVRASGHARDT 403 + LV L+ P+ Q V + P+ P+ H R+ Sbjct: 191 PGAEALVAWTAALNLPDDPQDFVSVALRHPDEYPMNEGRIVSSDGLDIPIADYESHFREH 250 Query: 404 RADHPFVGYGLLPMEV----HSEQGCDVISRL------------------------KVRI 435 + H Y L + + RL R Sbjct: 251 QEPHSTALYAALDGRPYLVGPLARLNLNLDRLHMPVREALGRTGIAFPSRNMFHSIVARA 310 Query: 436 NEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYR 495 E++ AL L++ G EAPRG H ++ Sbjct: 311 AEIHYALLETSRLLEDYTEPEAPF-VPAVPRVGIGYGCTEAPRGLLWHRYDLDAAGQVLH 369 Query: 496 WRCRAATYANWPTLRYMLR-----------GNTV-SDAPLIIGSLDPCYSCTDRMTVVDV 543 R T N + LR G T+ A ++I + DPC SC V + Sbjct: 370 ARIVPPTSQNQARMEADLRHSLETLGLDRDGETLRQQAEMVIRNYDPCISCATHFLKVRL 429 Query: 544 RKK 546 ++ Sbjct: 430 ERR 432 >UniRef50_B9L8N1 Nickel-dependent hydrogenase, large subunit n=1 Tax=Nautilia profundicola AmH RepID=B9L8N1_NAUPA Length = 387 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 66/379 (17%), Positives = 144/379 (37%), Gaps = 38/379 (10%) Query: 194 PGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYT 253 G L ++G+ ID F+ + G+E+ + + Y + ++ RVCGICG +H A Sbjct: 12 EGEATLKIEGDKKIDFVQIEFWQYHGIEEYLKNK-NYMDALVINPRVCGICGHSHLHATV 70 Query: 254 TSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG--FMQFFRVRETS 311 +E ++ ++AQ+ R + +E + +H+ + + T + + Sbjct: 71 KVIEKVFKAKISKKAQIFREVTSLLEIVENHIKWFYITIYPTQIKDKEYLFKAVKFSSKI 130 Query: 312 MKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRRE-VQELVDVLLSTPNME 370 K IL G + GG+ D ++++ + L ++++ E ++E++D L++ ++E Sbjct: 131 SKAIAILAGQFPHNSYMVPGGVTCDPTYMEIMRLKDLIKEIKEEYIKEIMDENLTSHDLE 190 Query: 371 QRTVGIGRLDPEIARDFSNVGPM--------------VRASGHARDTRADHPFVGYGLLP 416 + + + + F +G R +++ ++ + G L Sbjct: 191 RFFENLPKDIGKSLNKFLVLGESNIFKSNGDYKNVKEERNKSLSKNALYNNEYYEVGPLA 250 Query: 417 MEVHSEQGC----------DVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIP 466 + ++ + +R+ RI E L+ I+ L + + Sbjct: 251 RMIINKNKNIKKIYDIYSDSIYTRMCARIYEPLLLLDYIEQKLSEVDLCEPSF-LKPNVR 309 Query: 467 HRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANW--------PTLRYMLRGNTV 518 + A+ EAPRG IH + N+K+ + T N + L + Sbjct: 310 NGKAIVAVEAPRGSLIHEI-SIKNEKIDYYNIVVPTQFNLASSTKENPSPAQAALMNEDI 368 Query: 519 SDAPLIIGSLDPCYSCTDR 537 + + D C C Sbjct: 369 AYVDSVFRCFDICAVCMSH 387 >UniRef50_B6YTV8 Coenzyme F420 hydrogenase alpha subunit n=1 Tax=Thermococcus onnurineus NA1 RepID=B6YTV8_THEON Length = 392 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 69/383 (18%), Positives = 122/383 (31%), Gaps = 30/383 (7%) Query: 190 TSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHS 249 L+ + + DA + RG EKL + V + R+CG+C +H Sbjct: 11 RIAGEAKLVLYEENGTVQDALFIATAPIRGFEKLVVGKNPLFAVEAVM-RICGLCHASHG 69 Query: 250 TAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT----GFDSGFMQFF 305 A + ++ENA+GI P ++R L V R+ SH+L + + Q Sbjct: 70 IAMSEAIENAIGIIPPRNGILMREALGLVNRIQSHMLEFLMVAGDLLIEEKREEVLFQLM 129 Query: 306 RVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLS 365 + GA +GG+ + ++ + +E+ +L Sbjct: 130 DFHAKISDYLLKMGGAATHPPNLTVGGMFSVPKWSVFNNLKARLPKLTGQWEEIAHLLTD 189 Query: 366 TPN---MEQRTVGIGRLDPEIARDFSNVGPM----VRASGHAR-DTRADHPF-------- 409 + + + R + R D+P Sbjct: 190 EDIQTEVADELREKKAENNYLVSSLFYGDRFNINAERIETMPYYEYRKDNPHSKESTTLI 249 Query: 410 VGYGLLPME---------VHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVE 460 YG +E + R+ + AL ++ LD++ Sbjct: 250 AFYGGEKVEAGPRARMKVYREFTDSSLYGLHTARVQDTTLALIRLEEILDSIKMDEPFRT 309 Query: 461 GFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSD 520 +G EAPRG IH GD ++ + T N P + M +G +V Sbjct: 310 KNIVFGPGKGVGVYEAPRGTLIHLIELGDEGRVVSSKIIVPTMFNIPVMEEMAKGLSVKA 369 Query: 521 APLIIGSLDPCYSCTDRMTVVDV 543 A ++ DPC CT + + Sbjct: 370 AEAVMRLYDPCIPCTTHVVRLGG 392 >UniRef50_A3Q228 Nickel-dependent hydrogenase, large subunit n=7 Tax=Bacteria RepID=A3Q228_MYCSJ Length = 430 Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 80/423 (18%), Positives = 140/423 (33%), Gaps = 71/423 (16%) Query: 189 VTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAH 248 + G + + + + ++ R E R Y E ++ RVCGIC A+ Sbjct: 14 TRVEGEGALHVTLTDGVVESVELNIYEPPRFFEAFLRGRA-YTEPPDITARVCGICPVAY 72 Query: 249 STAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLA--CHFTGFDSGFMQFFR 306 + ++E+A G+ + +R +L E +HSH L++ L F G+ Sbjct: 73 QVSACNAIEDACGVTLDPELIELRRLLYCGEWIHSHALHIYLLHAPDFLGYPDAISFAKD 132 Query: 307 VRETS----------MKMAEILTGARKTYGLNLIGGIRRDLLKDDM----IQTRQLAQQM 352 RE ++ E + G +GG +D++ + R+ Sbjct: 133 HREFLERGLALKKAGNRLMEQIGGRAIHPINVRLGGFYSVPRRDELGPLAEELRRALDDA 192 Query: 353 RREVQELVDVLLSTPNMEQRTVGIGRLDPE--------IARDFSNVGPMVRASGHARDTR 404 ++ + + P++E + P+ I R P+ S H R+ + Sbjct: 193 LFTLRSVAEF--DFPDVEFDHEFLALTQPDRYAIEDGAIVRSAGPAFPVADFSEHVREMQ 250 Query: 405 ADHPFVGYGLLPMEVHSEQGCDVI----------SR------------------LKVRIN 436 H + L E + +R + VR Sbjct: 251 VPHSTALHATLDGERYLTGPLARYSLSSAALSPTARQAAAQAGLGAQCRNPFRSIVVRAV 310 Query: 437 EVYTALNMIDYGLDNLPGGPLMVEGFTYIP--HRFALGFAEAPRGDDIHWSMTGDNQKLY 494 EV A I+ L + F +P G +EAPRG H GD+ + Sbjct: 311 EVVYA---IEEALRIIEDYERPARPFVDVPARAGVGHGVSEAPRGLLYHRYEIGDDGLVS 367 Query: 495 RWRCRAATYANWPTLRY----MLRGNT-VSDAPLI------IGSLDPCYSCTDRMTVVDV 543 T N + Y ++ GN + DA L I + DPC SC+ + V Sbjct: 368 AATMVPPTAQNQAAIEYEMGRLVAGNLTLDDAELTSLCERSIRNHDPCISCSAHFLTLTV 427 Query: 544 RKK 546 + Sbjct: 428 ERG 430 >UniRef50_C0QP83 Nickel-dependent hydrogenase, large subunit n=2 Tax=Hydrogenothermaceae RepID=C0QP83_PERMH Length = 428 Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 65/425 (15%), Positives = 140/425 (32%), Gaps = 62/425 (14%) Query: 184 IGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGI 243 I L + G LF + + D +F R +E + + + Y + ++ R+CGI Sbjct: 4 IENLLTRVEGEGSISLFYENGTLKDVKLNIFEPPRFIEGILKGKEYYR-IIDVTSRICGI 62 Query: 244 CGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHF--------- 294 C A+ + ++E+A G++V + +R + E + SH +++ Sbjct: 63 CPVAYQISGVQAIEDAFGLKVSSEIEKLRRLYYFGEWIQSHAVHVFFLHLPDFLNKGSVF 122 Query: 295 -TGFDSGFMQFFR--VRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQ 351 G DS ++ ++ + + G +GG + D + L ++ Sbjct: 123 EVGKDSPEFLKIGTIIKNAGSEIIQKIGGRVSHPVSISVGGFTKFADDDSLKSIIPLLEK 182 Query: 352 MRR-----------------EVQELVDVLL---STPNMEQRTVGIGRLD------PEIAR 385 E+ ++ + L P ++ V L + + Sbjct: 183 ALDLSVYALKRFSEFNFPDNEIPDIHFLSLEEEEYPILKGDIVSNKGLRLTKEEFDNVIK 242 Query: 386 DFSNVGPMV-RASGHARDT-------RADHPFVGYGLLPMEVHSEQG-----CDVISRLK 432 ++ RA + RD R ++ + + ++ + + + Sbjct: 243 EYQVDHSTAKRAKLYGRDLYIVGPISRFNNSYEKLSYMALKSSKDIDLYPPIKNSFKTIL 302 Query: 433 VRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQK 492 +R+ E+ +L + + L +T + G +EAPRG H K Sbjct: 303 IRMVEIIHSLERSIDLIKDYRKESLKNADYT-VKEGTGYGVSEAPRGILWHKYSFDSEGK 361 Query: 493 LYRWRCRAATYANWPTLRYMLRGN---------TVSDAPLIIGSLDPCYSCTDRMTVVDV 543 + + T N + +R + +I + DPC SC + Sbjct: 362 IKKADIVPPTSQNQDIMEVSVRNMIMNRENIEEILKTGEKVIRNFDPCISCATHFLKIGE 421 Query: 544 RKKKS 548 + K Sbjct: 422 IRGKK 426 >UniRef50_Q3AU04 Hydrogenase/sulfur reductase, alpha subunit n=10 Tax=Chlorobiaceae RepID=Q3AU04_CHLCH Length = 426 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 81/431 (18%), Positives = 136/431 (31%), Gaps = 74/431 (17%) Query: 176 DKKNNVVPIGPLH-VTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVT 234 + I H + + + V +++A + + R E + + M + Sbjct: 1 MSIERNLDINIHHLTRVEGHANIHIHVKNGELVEAQWAIIETPRFFEVMLKG-MSAEQAP 59 Query: 235 FLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLAC-- 292 FL+ R+CGIC +HS A ++E AM I P A+++R + + E L SH L+L Sbjct: 60 FLTSRICGICSISHSLANIRALERAMQITPPPLAEVVRRLAMHGETLQSHALHLFFLAVP 119 Query: 293 HFTGFDSGF----------MQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDM 342 F G S +++E ++ G ++GGI + + Sbjct: 120 DFAGLPSVLPLMESHPQVVRAGLQLKELGNSISIAAAGRATHPVSLVLGGITKAPELQQL 179 Query: 343 IQTRQLAQQMRREVQELVDVL--LSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHA 400 + + Q+ + + + V L PN + T I + G +V + G Sbjct: 180 KELLTMTQERKLALAQAVTFFEELHIPNFTRETEFISLCNGVTYPAIG--GQLVSSDGIT 237 Query: 401 RD-----TRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALN------MIDYGL 449 RD + + S + R N Y L+ +GL Sbjct: 238 RDENDYLLMTNEYTRDFSTSKFTRLSRN--SSAAGALARFNNNYHLLHPNAQAVAARFGL 295 Query: 450 DNLPGGPLM------------------------------VEGFTYIPHRFALGFAEAPRG 479 + P M + A G EAPRG Sbjct: 296 QPVCHNPFMNNIAQLVECVHILEDAEELIGMVMDMKGEETKCHYTPQAGAATGAVEAPRG 355 Query: 480 DDIHWSMTGDNQKLYRWRCRAATYAN-------WPTL------RYMLRGNTVSDAPLIIG 526 H+ T D + R C T N L G +++ Sbjct: 356 ILYHYMETNDEGMVVRADCIIPTTQNNGNIYDDLQALAAELLREGKCDGEIQLQCEMLVR 415 Query: 527 SLDPCYSCTDR 537 S DPC SC+ Sbjct: 416 SYDPCISCSVH 426 >UniRef50_C5A2R8 Coenzyme F420 hydrogenase subunit alpha (FrhA) n=1 Tax=Thermococcus gammatolerans EJ3 RepID=C5A2R8_THEGJ Length = 393 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 62/381 (16%), Positives = 122/381 (32%), Gaps = 31/381 (8%) Query: 190 TSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHS 249 L+ + + DA + RG EK+ + V + R+CG+C +H Sbjct: 14 RIAGEAKLILYEEDGVVQDALFIATAPVRGFEKMVVGKNPLFAVEAVM-RICGLCHASHG 72 Query: 250 TAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT----GFDSGFMQFF 305 A + ++E+A+G+ P +++R L + R SH L + + + Sbjct: 73 IAASEAIEHAIGVTPPRNGRLMREALGLINRAQSHALLFLMVAGDLIKEEKRNDVLFKLM 132 Query: 306 RVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLS 365 L GA IGG+ + + + + ++L+ Sbjct: 133 DFHAKISDYLLKLGGAATHPPNLTIGGMLSVPKWSVFNNLKARFKDLTASWEAAEELLID 192 Query: 366 TPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLP--------- 416 +++ R + ++ D + P+ + Sbjct: 193 -EDIQTEIADELREAKRPFKYLASGFFYGDRYNIEWDKVSSVPYYEFRKEEAARESTTLV 251 Query: 417 ----------------MEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVE 460 + + + RI + A+ + LD + Sbjct: 252 SFYDGEKVETGPRARMITYREFRDESLYGLHLARIEDTRLAIQRLGEILDEIRIEEPFRT 311 Query: 461 GFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSD 520 G +G EAPRG IH+ G+ ++ + R T N P + M +G +V Sbjct: 312 GDITFRPGKGVGVYEAPRGTLIHYVELGEEGRVLKSRIVVPTMFNIPVMEEMAKGLSVKA 371 Query: 521 APLIIGSLDPCYSCTDRMTVV 541 A ++ DPC CT + + Sbjct: 372 AEAVMRLYDPCIPCTTHVVRL 392 >UniRef50_Q2J4F0 Nickel-dependent hydrogenase, large subunit n=4 Tax=Bacteria RepID=Q2J4F0_FRASC Length = 430 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 63/421 (14%), Positives = 118/421 (28%), Gaps = 66/421 (15%) Query: 189 VTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAH 248 + G + + + +A ++F R E R Y E ++ R+CGIC A+ Sbjct: 13 TRVEGEGRLLIKITDGRVDEAHLKIFEPPRFFEAFLRGRA-YTEPPDITARICGICPVAY 71 Query: 249 STAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLG--LACHFTGFDSGF----- 301 + ++E + V +R ++ E + SH L++ F G+DS Sbjct: 72 QMSALAAIEQICDVTVTGPPAALRRLIYCGEWIESHALHVFLLHLPDFLGYDSALHLAQD 131 Query: 302 -----MQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREV 356 +++ + ++ G +GG R + D+ + +Q R Sbjct: 132 QPALVKLGLTLKKAGNTLMTVIGGRAIHPVNARVGGWYRAPRRRDLTELVGQLEQARDIA 191 Query: 357 QELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGH-----ARDTRADHPFVG 411 ++ + E + G + +G D V Sbjct: 192 RDTARFTAALDFPEDELHQTFVALHQPGEYPVERGRIASTAGLDIAPADYDRHFTEEQVP 251 Query: 412 YGLLPMEVHSEQGCD----VISRL-------------------------------KVRIN 436 + + G ++R VR Sbjct: 252 WSNA-LHSTLAAGGSYLTGPLARFALGAERLAPAARETAAEIGLRPPERNPYRSIIVRCI 310 Query: 437 EVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRW 496 E+ A + + + G EAPRG H N + Sbjct: 311 EMVHAADEALRIIADYTEPDPSA-LEAPPRAGTGYGVTEAPRGLLYHRYTIDHNGTILDA 369 Query: 497 RCRAATYANWPTLRYMLRG-----NTVSD------APLIIGSLDPCYSCTDRMTVVDVRK 545 + T N + LRG +S+ I + DPC SC + + Sbjct: 370 KIVPPTAQNQRPIEEDLRGVVERFMNLSEPELALRCERAIRNYDPCISCATHFLTLHIEH 429 Query: 546 K 546 Sbjct: 430 G 430 >UniRef50_A8UU10 Nickel-dependent hydrogenase, large subunit n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UU10_9AQUI Length = 419 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 68/409 (16%), Positives = 131/409 (32%), Gaps = 59/409 (14%) Query: 189 VTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAH 248 + G + +GE + D +F R E+L + + ++V R+CG+C A+ Sbjct: 10 TRVEGLGRLSVLTEGEEVKDVRLEIFEPPRFFERLLKGKKP-DQVIDTVARICGLCPVAY 68 Query: 249 STAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACH-FTGFDSGFMQFFRV 307 + E+ ++VP + +R + E + SH ++ F++ R Sbjct: 69 QLTAVEAFESIFELKVPRHIRELRRAIYCGEWVSSHSAHIFFLHLPDFYERESFLELMRE 128 Query: 308 RETSMK-----------MAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREV 356 + ++ + E+L G +GG + + T + Sbjct: 129 KRELLEAGLQIRKTGNSIIELLGGRHIHPVNIRVGGFYKIPSAPRIENTLAEIESALPFA 188 Query: 357 QELVDVLLS----------------TPNMEQRTVGIGRLD----------PEIARDFSNV 390 ++ +++ L+ + T G E ++ Sbjct: 189 EKALELFLNFDYPEMEKERIFVSLGNHEVYPITEGSAVSSEGMNIEKNEYEEYFVEYQLP 248 Query: 391 GPMVRAS----GHARDTR-ADHPFVGYGLLPMEVHSEQGCDVISR-----LKVRINEVYT 440 S G A + + +G LP ++ + + +R + RI EV Sbjct: 249 HSTALYSRLKDGKAYEVGALARIYNNFGKLPQDLREKVEGVLPARNPFKSIIARIVEVIY 308 Query: 441 ALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRA 500 AL + L+ GG VE +G EAPRG H ++ Sbjct: 309 ALREAKHILEKFEGGEPHVEYSIR--EGEGVGITEAPRGILYHRYRVNSKGEVVFANIVP 366 Query: 501 ATYANWPTLRYMLR--------GNTVSDAPLIIGSLDPCYSCTDRMTVV 541 T N + + G+ A ++ + DPC SC V Sbjct: 367 PTSQNQRAMEEDVLLGLKTLKNGDIRVLAEKLVRNFDPCISCASHFLEV 415 >UniRef50_B6BMW7 Nickel-dependent hydrogenase, large subunit n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BMW7_9PROT Length = 419 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 71/415 (17%), Positives = 134/415 (32%), Gaps = 71/415 (17%) Query: 191 SDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHST 250 + GE I D F R +EK+ E + + ++ RVCGICG AH Sbjct: 8 IEGEAKLNFSFAGEEIDFVDIE-FMTARNIEKILEGKSAL-DALVINPRVCGICGHAHLI 65 Query: 251 AYTTSVENAM-GIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT-GFDSGFMQFFRVR 308 A ++E+ I++ ++A++IR + L E + +H L G ++ Sbjct: 66 ATVKALEDCYENIEISKKAEIIRELTLTFELIQNHFKWFYLTMRPLFGKKQEVLKATYPT 125 Query: 309 ETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQ----------- 357 + K + G ++GG+ D+ + D+I+ + ++ + + Sbjct: 126 QLMAKAIAVFGGQYPHTSYAIVGGVVCDITEIDIIKIKHYIEETIKFFETNLVQADTKDF 185 Query: 358 --------------ELVDVL--------LSTPNMEQRTVGIG-----------------R 378 +L D+L L R + G Sbjct: 186 LVCDNVDKVLKKNGDLPDILREIKKKKYLDHGKSYDRFIAFGENSYFTKGKSHKTITTHN 245 Query: 379 LDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPM----EVHSEQGCDVISRLKVR 434 + + ++ N+ + + + P + + + H G ++ SR+ R Sbjct: 246 ISIDYVKEQDNLNSLAKNVTYKDKYYEVGPLARAMINKVPLVKDSHRRYGDNIFSRIIAR 305 Query: 435 INEVYTALNMIDYGLDNLPGGPLMVEGFTY---IPHRFALGFAEAPRGDDIHWSMTGDNQ 491 + E+ LN L+ L + EA RG IH +N Sbjct: 306 VCEIPQLLNHSKELLEKLDLSEPSYIEPNIDISQINASGESAVEAARGSLIHKVEL-ENG 364 Query: 492 KLYRWRCRAATYA--------NWPTLRYMLRGNT-VSDAPLIIGSLDPCYSCTDR 537 + + T N + + G V A L+ + D C CT Sbjct: 365 IIKNYEIITPTQWNLGNGTRENLGVSQQAMVGLKDVKTAELVFKTFDVCSVCTTH 419 >UniRef50_B8GAR8 NADH-ubiquinone oxidoreductase chain 49kDa n=3 Tax=Chloroflexus RepID=B8GAR8_CHLAD Length = 365 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 95/360 (26%), Positives = 142/360 (39%), Gaps = 17/360 (4%) Query: 180 NVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLF-----YVHRGMEKLAETRMGYNEVT 234 + + P+ L V+GE I D +YR Y R L + Sbjct: 3 YQLTLHPVAGAWHSE-QLTLTVEGEYIRDVEYRPATGDGAYAQR----LLQGGG--ESAV 55 Query: 235 FLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHF 294 + +VC C AH+ A + ++E I P RAQ IR I+ E+ER SH+ N A Sbjct: 56 RAAAQVCPYCSVAHTLALSLALEALAEITAPLRAQAIRVIVAELERAASHM-NTLAALIA 114 Query: 295 TGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRR 354 + + ++ + L G + GG+ + + T + ++ Sbjct: 115 ALGLNSATRLSQLETRIRSILLALLGHHE-AAYIRPGGLAEPPDEARLADTERAINELLP 173 Query: 355 EVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGL 414 + EL + + + R V IG L E AR F GP+ RAS D R D P+ GY + Sbjct: 174 HMIELAEQTIPRRTLVARMVDIGVLTTEAARQFGLAGPLGRASDITTDQRIDAPYAGYTV 233 Query: 415 LPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFA 474 L + EQG DV +R V + E +L + L NLP G + Sbjct: 234 LTPALVVEQGGDVHARAVVLLIEAIESLRLAVRWLHNLPIGETYTAFTLRL--GEGTATV 291 Query: 475 EAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSC 534 EAPRG + + Q+L A + R +L+ V D LI S DPC +C Sbjct: 292 EAPRGPLRYTVRSDG-QRLTAVEIGIAPQLDRLLARTLLQNAAVDDTLLIAISTDPCTAC 350 >UniRef50_Q7G6A6 NAD, putative n=3 Tax=Magnoliophyta RepID=Q7G6A6_ORYSJ Length = 352 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 88/221 (39%), Gaps = 26/221 (11%) Query: 343 IQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARD 402 + + R+ + + P +R G+G + E A ++ GPM+RASG D Sbjct: 132 ERGLRRLLGKRQRLLAYLAKKNRNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWD 191 Query: 403 TRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGP---LMV 459 R + Y +V ++ D ++R VRI E+ ++ +I ++ +PGGP L V Sbjct: 192 LRKVDLYESYNQFDWKVQWQKEGDSLARYLVRIGEMRESIKIIQQAVEKIPGGPYENLEV 251 Query: 460 EGFTYIPHRFA-----------------------LGFAEAPRGDDIHWSMTGDNQKLYRW 496 F + EAP+G+ + + D+ +RW Sbjct: 252 RCFKKAKNSEWNDFEYRFLGKKPSPNFELSKQELYARVEAPKGELGIYLVGDDSLFPWRW 311 Query: 497 RCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 + R + N L +++ ++D I+GS+D D Sbjct: 312 KIRPPGFINLQILPQLVKKMKLADIMTILGSIDIIMGEVDH 352 >UniRef50_Q24X55 Hup-type Ni,Fe-hydrogenase large subunit n=6 Tax=Bacteria RepID=Q24X55_DESHY Length = 518 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 72/515 (13%), Positives = 143/515 (27%), Gaps = 153/515 (29%) Query: 186 PLHVTSDEPGHFRLFVDG-ENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGIC 244 + + GH ++ V+ ++ + ++RG E L R + T++++R CG+C Sbjct: 5 VIDPVTRIEGHLKVEVEVTNGVVTDAKSIGTMYRGFEPLLRGRDP-RDATYVTERTCGVC 63 Query: 245 GFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLA------------- 291 +H A + +++ A G +VP ++IR +++ LH H L+ Sbjct: 64 AGSHGWASSLALDQAFGAKVPTGGRLIRNLMIGAMWLHDHPLHFYHLSALDYLDITAVAK 123 Query: 292 --------------------CHFTGFDSG---------------------FMQFFRVRET 310 T + ++ ++ Sbjct: 124 YQGQDPGLLRVKDKISKLIAAGDTAPLTPRYEPDAFCVNDPELVTLAVSHYLHALNMQAK 183 Query: 311 SMKMAEILTGARKTYGLNLIGGIRRDLL----KDDMIQTRQLAQQMRREVQELVDVLLST 366 + KM+ + G + + GG+ + + + + V + Sbjct: 184 AKKMSALFAGKQPHQSSIVAGGVTMLPNIEVVEQFRSMLLEQIDYLENIYLQDVLTFGTG 243 Query: 367 PNMEQRTVGIG------------RLDPEIARDFSNVGPMVRAS--------------GHA 400 P + G+G LD E G ++ + G Sbjct: 244 PLLPLAQAGVGGGYGNFLAYGGFGLDDEGKDFLFKQGIVLDGNLSNVMPVDQSKITEGVT 303 Query: 401 RDTRADHPFVGYGLLPMEVHSEQGCDVI------------------SRLKV--------- 433 D+P + V D +R+ V Sbjct: 304 HAWYKDNPNGDHPYDSDTVPDLAKKDAYSFVKAPRYDGKPIEVGPLARMLVMQPQGLMDI 363 Query: 434 ----------------RINE----VYTALNMIDYGLDNLPGG--PLMVEGFTYIPHRFAL 471 R E +N ++ + G E + + Sbjct: 364 IAKYNIKPGAVARHAARAFETVILAKEMINWVNQLEAEMGKGLRIHDTEHWNPPATGQGI 423 Query: 472 GFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWP---------TLRYMLRGNTVSD-- 520 G E PRG HW D+ ++ T N+ L L G + D Sbjct: 424 GLTEVPRGALGHWIKIKDHVT-ENYQMVVPTTWNFSPKDAQGNYGPLEKALIGVPIPDEN 482 Query: 521 ----APLIIGSLDPCYSCTDRMTVVDVRKKKSKVV 551 +I S DPC +C + +D + + + Sbjct: 483 NPINIVRVIRSYDPCLACAIHL--IDPQTNEIRKF 515 >UniRef50_B2TM83 [Ni/Fe] hydrogenase, large subunit n=2 Tax=Clostridium botulinum RepID=B2TM83_CLOBB Length = 471 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 69/457 (15%), Positives = 135/457 (29%), Gaps = 105/457 (22%) Query: 186 PLHVTSDEPGHFRLFVDGENIIDADYRL-FYVHRGMEKLAETRMGYNEVTFLSDRVCGIC 244 + + G ++ VD EN D + RG EK+ + R ++ L+ R+CGIC Sbjct: 5 VIDPVTRISGLLKIEVDVENNKIVDAKSTGSQFRGFEKMFQGRPPL-DIIRLAPRICGIC 63 Query: 245 GFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLL--NLGLACHFTGFDSG-- 300 +H+ A T ++ENA+ I ++IR I E L +HL F + Sbjct: 64 STSHAIAATLALENALNITPDFNGKVIRDIAHGFEFLQNHLRTTYFFAFPDFVKITASNP 123 Query: 301 -------------------------FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRR 335 +++ + + +L G +GGI Sbjct: 124 LYKDGTDKELDYRLPEDITKKINEDYLEAVKYSRECHRAIAVLAGKAPHCHGIWVGGIST 183 Query: 336 DLLKDDMIQTRQLAQQMRREVQ-----------ELVDVLLSTPNMEQRTVGIGRLDPEIA 384 + + + ++ ++ + + + + G A Sbjct: 184 YIDVPEKESVKYTITVVKEFIENKLLEDVKIIAQYYNDYFNMGKGYGNLMDFGLYSDYKA 243 Query: 385 -RDFSNVGPMVRASGHARDT-------------------------------RADHPFVGY 412 ++ M+ D + Sbjct: 244 PIKYTEASAMINGKKENIDVNNITENVKYSYLDIPGGMVMPGVSSTPEPNPYKQDAYSWV 303 Query: 413 GLLPMEVHSEQGC---------------DVISRLKVRINEVYTALNMIDYGLDNLPGGPL 457 + +S +G + R+ R+ E I +D + G Sbjct: 304 DAARYKNYSMEGGPLARQILNGYYENKISAMDRILARVLESVKICESIIGLIDLMKLGQA 363 Query: 458 MVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWP---------T 508 + E + +G APRG HW + +N+++ + + N Sbjct: 364 VQEEWQIPSKVNGIGLIGAPRGALGHWL-SIENKQVSNYTLIPPSAWNLSPTDSNNIKGP 422 Query: 509 LRYMLRGNTVSDA------PLIIGSLDPCYSCTDRMT 539 + L G ++D I+ S DPC +C +T Sbjct: 423 VEAALIGTEINDMKNPVEIGRIVRSFDPCSNCAAHVT 459 >UniRef50_C8X545 Nickel-dependent hydrogenase large subunit n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X545_DESRD Length = 486 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 65/461 (14%), Positives = 135/461 (29%), Gaps = 110/461 (23%) Query: 186 PLHVTSDEPGHFRLFV---DGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCG 242 + + GH ++ + D + D+ +++ + RG E+ + R E+ ++ ++CG Sbjct: 6 SIDPLTRLEGHGKIDIFLNDDGTVQDSYFQVVEL-RGFEQFCQGR-PVEELPRITPKICG 63 Query: 243 ICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLAC---------- 292 +C AH A + + + G+ P A+ IR + HSH+L+ Sbjct: 64 VCPGAHHMASSKAADAVYGLTPPPAARKIRELFYNAHIAHSHILHFFALAAPDFMPGPEA 123 Query: 293 -----HFTGFDS-----GFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDM 342 + G + + R + K+ ++ G +L GG+ + + Sbjct: 124 GPGKRNILGLVDELGKGAVRRVLQNRGYAQKIQGLIAGHPIHPVASLPGGMAGPVSEKTR 183 Query: 343 IQTRQLAQQMRREVQELVDVLLSTPN--------------MEQRTVGIGRLDPEIARDFS 388 + +A ++R E + RT +G +D + +F Sbjct: 184 QEIAGMASEIR-EFAQFALWFFENHILAQDRNRELLTGELFTHRTHYMGLVDSQGRVNFY 242 Query: 389 NVG---------PMVRASGHARDTRADHPFVGYGLLPMEVHSEQG--------------C 425 + M + G + + + ++G Sbjct: 243 DGQLRVVTPEGETMAQFDGSDYLEHLAETVLPWSYMKFPYLRDKGWHGLIDGADSGVYRV 302 Query: 426 DVISR----------------------------------LKVRINEVYTALNMIDYGLDN 451 + ++R R+ E+ A + + Sbjct: 303 NSLARLNVADGMATPLAQEAYETMRAFYGGTPIHNTLAFHWARLVELMQAAEALVDLSQD 362 Query: 452 LPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRY 511 V +G EAPRG IH T N + AT N + Sbjct: 363 PEVTDTNVRSLPEGRPGEGVGVVEAPRGSLIHHYTTDANGLVKTVNLIVATVQNNAGMGM 422 Query: 512 MLRGN---TVSD----------APLIIGSLDPCYSCTDRMT 539 ++ + D + + DPC +C Sbjct: 423 SVKKAAQGLIQDGAPDEAVLDMIEMGYRAYDPCLACATHAL 463 >UniRef50_Q0W6U1 Coenzyme F420-non-reducing hydrogenase (Methyl viologen-reducing hydrogenase), alpha subunit n=2 Tax=Euryarchaeota RepID=Q0W6U1_UNCMA Length = 467 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 82/470 (17%), Positives = 139/470 (29%), Gaps = 114/470 (24%) Query: 186 PLHVTSDEPGHFRLFV---DGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCG 242 +H + GH + V D + DA + + RG EK E E ++ R+CG Sbjct: 5 TIHPITRIEGHASVTVQLDDKGEVADAHFHATEL-RGFEKFLEG-AAIEEAPRITPRICG 62 Query: 243 ICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHF---TGFDS 299 IC H A +V+ G +PE A +R +L+ + + SH L+L + + Sbjct: 63 ICPTVHHLAAAKAVDEVFGATIPEAAYKMRELLIAGQLISSHYLHLFMLSMPDYLLEGAT 122 Query: 300 GFMQ---------------FFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQ 344 + R+ ++ E G + GG+ L + + Sbjct: 123 PATRNVAGLAKANPDLARMAIEARKIGQRITEEAGGKPIHPVSAIPGGMSFSLTEQKRAE 182 Query: 345 TRQLAQQMRR-----------EVQELVDVLLSTPNMEQRTVGI----------------- 376 A++ E D + + ++ +G+ Sbjct: 183 LEAYAKRSLEIAVAAWNLVNGEFDRKADFVKTLGVVQTDFIGMTSGGKFETYDGPIRMMD 242 Query: 377 ---GRLDPEIARDFSNV-------------------------GPMVRAS-----GHAR-D 402 G L A+D+S+ GP+ R + G+ D Sbjct: 243 ANGGSLGEFQAKDYSSHIEEYAEPYSYMKFTKLKSGSGFYRVGPLARVNVADSMGYPEAD 302 Query: 403 TRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGF 462 YG P + RI EV A L + V Sbjct: 303 KMLAEFRAKYGRAPQQPALYN--------LARIIEVAAASERALALLQDRAITDKNVRNP 354 Query: 463 TY-IPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLR--------YML 513 I + +G EA RG IH D + AT N + + Sbjct: 355 VAGIKNTRGVGIVEATRGTLIHDYTVNDKGFITSANLIVATGHNNRAIDRGVFETAKKYI 414 Query: 514 RG----NTVSDAPLIIGSLDPCYSCTDRMT--------VVDVRKKKSKVV 551 G T++ +++ + DPC SC + D + V Sbjct: 415 HGDADEATLNKIEMLVRAYDPCVSCATHAIGRMPIILSLFDSEGNVIREV 464 >UniRef50_A6Q3L3 Ni-Fe hydrogenase, large subunit HupV n=1 Tax=Nitratiruptor sp. SB155-2 RepID=A6Q3L3_NITSB Length = 403 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 73/401 (18%), Positives = 132/401 (32%), Gaps = 60/401 (14%) Query: 191 SDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHST 250 + D + I D LF +RG+E++ R + + ++ R+CGICG AH Sbjct: 9 IEGEAFLEFQKDKQTITDVKV-LFPHYRGIEEILRGRDPW-DALVINPRICGICGHAHLQ 66 Query: 251 AYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGL-ACHFTGFDSGFMQFFRVRE 309 A +E+ + + ++A+ IR I E + +H+ L H F + + Sbjct: 67 ATAMVLESIFQVNITQKAKNIREITRFCEIIQNHIKWFYLVIFHELNIPYDFTKVHHLIV 126 Query: 310 TSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNM 369 T K+ + +G ++GG+ D ++ Q + L QQ+R + +L+ L N+ Sbjct: 127 TINKLLALFSGQWPHSSYCVVGGVTCDPTSLEIHQAKTLIQQIRDQFIQLIGKLHDPLNL 186 Query: 370 EQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRA-----------------------D 406 + + R ++D+ Sbjct: 187 TNDLQKL-YRTLQEKELLLVGKSHDRFITFSQDSHVSNIKLLHGQKRKTKLTLIEENEQK 245 Query: 407 HPFV-------GYGLLPMEVHSEQGCDVISRLKVR----------INEVYTALNMIDYGL 449 + Y Q D R R I +Y +I+ + Sbjct: 246 RSYAKNVTYNGKYYETGPLARLMQQTDPFVRYFHRRFKDSITTRIIARIYEVSLLIEKII 305 Query: 450 DNLPGGPLMVEGFT--YIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANW- 506 D+L L + A+ EA RG IH + K+ + T N Sbjct: 306 DHLATIDLSQPSVVESKMQDGTAIISIEAARGSLIHQATIH-QGKIETYNFITPTQWNLS 364 Query: 507 -------PTLRYMLRGN---TVSDAPLIIGSLDPCYSCTDR 537 ++ + G +++ LI S D C CT Sbjct: 365 NGTSQNPSVIQKAIVGTSDEKIAN--LIFRSFDICSVCTTH 403 >UniRef50_C0GED6 Nickel-dependent hydrogenase large subunit n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GED6_9FIRM Length = 427 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 66/416 (15%), Positives = 134/416 (32%), Gaps = 75/416 (18%) Query: 197 FRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSV 256 + + I +F R + R Y E+ ++ R+CGIC ++ ++ Sbjct: 20 LDVNLVNGTIESLKLNVFEPPRFFQNFLVGR-KYRELPDITARICGICPVSYQMTSINAI 78 Query: 257 ENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLAC--HFTGFDSGFMQ----------F 304 E+A ++V E+ +++R + + + SH+L++ + F G++S Sbjct: 79 EHAFDVEVSEQTRLLRKLFALSQFIQSHVLHVFMLAAPDFLGYESVISMAEDFPDEVKLA 138 Query: 305 FRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVL- 363 ++ + ++ G +GG ++ + Q + + ++ Sbjct: 139 LDLKRLGNDITALIGGREVHPVTPRVGGFSDLPSQEALKQAAERLEAALEGGMAAAKLVG 198 Query: 364 -LSTPNMEQRTVGIGR--------------------LDPEIARDF--------------- 387 LS P+M + +DP R+F Sbjct: 199 GLSVPDMSWDFTSVALSDKKEYAVNGGRLVSDNGLDIDPADYREFLHEAHVSPSHALHSS 258 Query: 388 -----SNVGPMVRASGHARDTR--ADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYT 440 VGP+ R D + + V +R+ ++ + Sbjct: 259 LSGNSFLVGPLARV-NLNFDRLSGKAKEAAALTGVSFPSKNPFH-SVDARVAELVHSIEE 316 Query: 441 ALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRA 500 +L +ID G P+ + + EAPRG H + + A Sbjct: 317 SLEIIDAL-----GKPVPEKNGYIVRPGCGAAITEAPRGILSHSYCFNELGVVEEADIVA 371 Query: 501 ATYANWPTLRYMLRGNT-----VSDAPLI------IGSLDPCYSCTDRMTVVDVRK 545 T N + LR +SD L I + DPC+SC+ + + + Sbjct: 372 PTSRNVKNMEEGLRRFIPEHLDLSDEELTLKCEMYIRNYDPCFSCSVHFLKLRINR 427 >UniRef50_C7NPL2 Nickel-dependent hydrogenase large subunit n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NPL2_HALUD Length = 439 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 73/435 (16%), Positives = 136/435 (31%), Gaps = 85/435 (19%) Query: 189 VTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAH 248 + G + + + ++++ R E + R + E ++ R+C IC +H Sbjct: 13 TRVEGHGSIVVNAEDGELDTCEWQVVESPRYFESMLVGR-SFEESHHVTSRICAICSVSH 71 Query: 249 STAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHF--TG---------- 296 + A + E A+G+ V E+ + +R + L E L SH+L+LG G Sbjct: 72 TIASLQATEAALGVSVSEQDRRLRKLALYGETLQSHVLHLGYLALPDLVGEKSVLPLADT 131 Query: 297 FDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREV 356 + + ++ E++TG + GGI + + ++ V Sbjct: 132 HEDELETVIDLHRLGNELTEVVTGRSVHAQRLVPGGISQLPEESELQALLDRLVNSWDAV 191 Query: 357 QELVDVL----LSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGY 412 EL D+L P E+ T I PE + ++ D + P Y Sbjct: 192 AELADLLAVLADEFPAFERETEYISLTHPEEYA-------FAEGTIYSSDV-GEIPVSDY 243 Query: 413 GLLPMEVHSEQGCDVISRL--------------------KVRINEVY------------- 439 + E E +R R E+ Sbjct: 244 RDVANEYVVEHSTAKFARHERESYMVGALARFNNNADQLAPRATEIADRFGLDAPVHNPY 303 Query: 440 ---------------TALNMIDYGLDNLPGGPLMVEGFTYIP-HRFALGFAEAPRGDDIH 483 ++ +I+ LD+ P +G E PRG H Sbjct: 304 LNNVAQLVEVAHLLGESVRLIEALLDDGLTPQSNYHVPEIDPTAGQGIGAIEVPRGVLFH 363 Query: 484 WSMTGDNQKLYRWRCRAATYANWPTLRYMLRGN--TVSD---------APLIIGSLDPCY 532 D ++ C T N ++ + T+ D +++ + DPC Sbjct: 364 EYAYDDTGEVTEANCVIPTNQNHGNIQRDMETLVPTIVDHPEDEIKHSLEMLVRAYDPCI 423 Query: 533 SCTDRMTVVDVRKKK 547 SC+ V+ + Sbjct: 424 SCSTHYLDVEFAGGE 438 >UniRef50_D1Z1J2 F420-non-reducing hydrogenase subunit A n=1 Tax=Methanocella paludicola SANAE RepID=D1Z1J2_METPS Length = 469 Score = 180 bits (458), Expect = 8e-44, Method: Composition-based stats. Identities = 82/466 (17%), Positives = 142/466 (30%), Gaps = 100/466 (21%) Query: 186 PLHVTSDEPGHFRLFV---DGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCG 242 +H S GH + + D + DA + + RG EK E E ++ R+CG Sbjct: 5 TIHPLSRIEGHASVTINLDDKGEVADAHFHATEL-RGFEKFLEG-AAVEEAPRITPRICG 62 Query: 243 ICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHL----------LNLG--- 289 IC H A +V+ G QVPE A +R +L + +HSH LG Sbjct: 63 ICPTVHHLASAKAVDEIFGAQVPETALKLRRLLDMGQFIHSHALHLFLLALPDYILGPDY 122 Query: 290 --LACHFTGFDSG----FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMI 343 + G R+ ++ E G + GG+ L + Sbjct: 123 NPALRNVVGLVQANPELAKMAIEGRKIGQRITEETGGKPIHPVSAVPGGMSFALANEKRA 182 Query: 344 QTRQLAQQ-----------MRREVQELVDVLLSTPNMEQRTVG---IGRLDPEI--ARDF 387 + +A++ + + + + D++ S ++ VG G+L+ R Sbjct: 183 ELEAMAKRSVEIARISWPVVMKMMDKYADLVNSVGLVQSDFVGLTRNGKLEFYDGNVRAI 242 Query: 388 SNVG-PMVRASGHARDTRADHPFVGYGLLPMEVHSEQGC----DVISR------------ 430 + G + G + + Y + + ++R Sbjct: 243 DSGGVQLADFPGKDYLSYIEETAEPYSYMKFTKLKKGNGFYRVGPLARVNIVDSIGTPEA 302 Query: 431 ---------------------LKVRINEVYTALNMIDYGLDNLPGGPLMVE-GFTYIPHR 468 R E A L + V T + + Sbjct: 303 DKMLAEFRAKYGRVPQQSLLYHAARTIEYMAASETALSLLQDSAITDKNVRTAVTGVKNT 362 Query: 469 FALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLR--------YMLRGNTVSD 520 +G EA RG IH D + + AT N + ++ G+ VS+ Sbjct: 363 RGIGVVEATRGTLIHDYTVNDKGFITKANLIVATGHNNRAIDRAVLQSSQKLIHGDNVSE 422 Query: 521 -----APLIIGSLDPCYSCTDRMT--------VVDVRKKKSKVVPY 553 +++ + DPC SC VVD + V Sbjct: 423 GTLNRIEMVVRAYDPCVSCATHAIGRMPVQLTVVDSEGNVIREVTK 468 >UniRef50_A7BI76 Ni,Fe-hydrogenase large subunit n=1 Tax=Hydrogenobacter thermophilus RepID=A7BI76_HYDTH Length = 438 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 77/435 (17%), Positives = 145/435 (33%), Gaps = 91/435 (20%) Query: 189 VTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAH 248 + L + I DA R+ RG+E++ E R + + ++ RVCGICG AH Sbjct: 9 ARVEGTAQLELVWENGRIRDARVRIPSS-RGIERVLEGR-PFMDALVITPRVCGICGHAH 66 Query: 249 STAYTTSVENAMG-IQVPERAQMIRAILLEVERLHSHLLNLGLACHF----TGFDSGFMQ 303 A ++E+A+G +++ ++A+++R I L VE + +H+ L G + Sbjct: 67 LMACVKALEDAIGHVRLSQKAKLVRDITLMVEMIQNHIKWFYLFVMPDFIRLGEKLDEFE 126 Query: 304 FFRVRE---------TSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRR 354 FR + ++K+ I G + GGI + D+ + L ++ Sbjct: 127 PFRGKRWKEAISVASEAIKVIAIFGGQWPHSSYAVPGGITSNFTSTDVSKALALVSRVEG 186 Query: 355 EVQELVDVLLSTPNMEQR-------TVGIGRLDPEIARDFSN------VGPMVR------ 395 E + + + R G +L ++ + G ++ Sbjct: 187 FFLESLVGMPVEAFLSLRKHGSWEGLKGDVKLFIDLCFKYGLERVGMSYGRLLTGGEVFP 246 Query: 396 -------------ASGHARDTRADH--PFVGYGLLPMEVHSEQGC--------------- 425 S + R P+ G + + Sbjct: 247 CITPGHFTGEKKLCSLNISKIREADGSPYSGAKRVRYNGMPYETGPLARQFLSGNPFVKR 306 Query: 426 ------DVI-SRLKVRINEVYTALNMIDYGLDNL------PGGPLMVEGFTYIPHRFALG 472 D R+ R+ EV+ + + L +L P + + I +G Sbjct: 307 LHKMYGDSYMVRVLSRLLEVWELTSTVKEKLTSLYSFIKEPSCQIPFQKPERI-TGEGVG 365 Query: 473 FAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPT--------LRYMLRG--NTVSDAP 522 EA RG IH + + + R+ + N + G N + A Sbjct: 366 IVEAARGTLIHRV-SIEKGVITRYHIITPSVWNLGPRCEKYLGVAEKAMIGLENPIH-AE 423 Query: 523 LIIGSLDPCYSCTDR 537 +++ S D C CT Sbjct: 424 MVLRSFDVCSVCTTH 438 >UniRef50_B3E0W8 Coenzyme F420-reducing hydrogenase, alpha subunit n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3E0W8_METI4 Length = 432 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 66/419 (15%), Positives = 117/419 (27%), Gaps = 73/419 (17%) Query: 190 TSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHS 249 + G + V+ + +F R E R Y ++ R+CGIC A+ Sbjct: 17 RVEGEGGISIEVEKGKVKSCKLHIFEAPRFFESFLIGRHFYEP-PDITARICGICPVAYQ 75 Query: 250 TAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLAC------------HFTGF 297 + T ++E + +PE +R +L E + SH L++ + Sbjct: 76 VSSTAAIEKGCNVLIPENLWQLRRLLYCGEWIESHSLHVFFLHAPGFLRYPSLMEMAKDY 135 Query: 298 DSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIR-----------RDLLKDDMIQTR 346 + ++++ + L G +GG D LK + T Sbjct: 136 PTEVGWGLQMKKAGNALIRTLGGREIHPVNVRVGGFYSLPEKKELKKLLDPLKKGLDNTL 195 Query: 347 QLAQQMRREV--------QELVDVLLSTPNMEQRTV-GIG----------------RLDP 381 + M V + +R G + D Sbjct: 196 AALKWMGSTFSFPPFQGAYRFVALRNDASYPIERGQLYCGQQPVPIEQFENFFKEEQTDY 255 Query: 382 EIARDF-------SNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVR 434 A + GP+ R + + VR Sbjct: 256 SNALRWLGNDSAPCVAGPLARF-NLNYYLLPPFLRDILKQTTLNYPCLNPFQS---ILVR 311 Query: 435 INEVYTALNMIDYGLDNL-PGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKL 493 + EV A + ++ P G F G +EAPRG H + + Sbjct: 312 LVEVAYAFDEAIRLIETYEPEGEPCCIDFKPC-ASLGQGISEAPRGILYHRYHVDEQGII 370 Query: 494 YRWRCRAATYANWPTLRYMLRG-----------NTVSDAPLIIGSLDPCYSCTDRMTVV 541 + T N + L+ N +D I+ + DPC SC + + Sbjct: 371 TGAKIVPPTCFNLVSAEEDLKAWIESHPHDSIENLSADCEQIVRNYDPCISCATHLIKL 429 >UniRef50_B9M7G0 Nickel-dependent hydrogenase large subunit n=5 Tax=Geobacter RepID=B9M7G0_GEOSF Length = 425 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 71/426 (16%), Positives = 130/426 (30%), Gaps = 66/426 (15%) Query: 181 VVPIGPLHVTSDEPGH--FRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSD 238 + I + + GH R+F+DG ++ + L R E L + + E+ + Sbjct: 1 MSNIIEIKPLTRVEGHGVVRVFMDGSHVDRVELALVEPPRLFEVLLRGKH-FREIPDIIC 59 Query: 239 RVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHF---- 294 R+C +C H +VE A GI V + R +++ + SH L+L Sbjct: 60 RICSLCSTIHRVTALMAVEKAFGIIVSSETYLYRQLIVLGGHIQSHALHLFCLALPDHFN 119 Query: 295 -TGFDSGFMQF-------FRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTR 346 GF R++ + E + G IGG+ + + +D+++ + Sbjct: 120 AAGFADLAKLAPDLLKLGLRIKAVGNDIQETIGGRLIHPINVKIGGMGQHIASNDLLRLQ 179 Query: 347 QLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRAS-GHAR---D 402 Q + + + V++ S L + G M+ S G A D Sbjct: 180 QSLKSILSDTIRTVELFSSFATPGPPLPPPVYLAVKDENAPPLFGDMLTTSTGIAVKGSD 239 Query: 403 TRA-------DHPFVGYGLLP-------------------------MEVHSEQ--GCDVI 428 R+ DH + + ++ D+ Sbjct: 240 YRSALKESVNDHSNGKFSHFDDTNIAVGALSRLNMNIRLTEAAGKAFDQAKKKLVNGDMW 299 Query: 429 SRLKVRINEVYTALNMIDYGLDNL--PGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSM 486 + E+ A+ +D+L G P EAPRG IH Sbjct: 300 QNNLAQAIELVFAVESAMEIIDSLLQTGHGHSATDGILSPKGEGTAITEAPRGVLIHSYS 359 Query: 487 TGDNQKLYRWRCRAATYANWPTLRY-------MLRGNTVSDA----PLIIGSLDPCYSCT 535 T N + G + +++ + DPC SC Sbjct: 360 FNSRGYCVGADIITPTAINQAAIEQDLLFLARATEGAGEQEMKFKLEMLVRAYDPCISCA 419 Query: 536 DRMTVV 541 + + Sbjct: 420 VHLISL 425 >UniRef50_B5I9E7 Ni Fe-hydrogenase III large subunit-like protein n=2 Tax=Aciduliprofundum boonei T469 RepID=B5I9E7_9EURY Length = 412 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 65/340 (19%), Positives = 115/340 (33%), Gaps = 22/340 (6%) Query: 197 FRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSV 256 F++ GE I L + R M A + + E +R+ G ++++ + V Sbjct: 89 FKIATCGERIDSLVPYLGFKKREMLNKAIGKEPW-EALPYVERITGQFSISYASLFYGLV 147 Query: 257 ENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAE 316 GI P+ + E+ER+H+H+ + M + E +++ Sbjct: 148 ---FGIDCPD---YL-LFAKELERVHNHIWVMHKLAGDASQKVANMHLAAITEEFLRLNL 200 Query: 317 ILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGI 376 G R G + + ++++ E + L + R Sbjct: 201 KTLGHRYGMNFLRTG-------PRKYDKFHENLSELKKWFLETAEELSDSRIFIDRLQTT 253 Query: 377 GRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRIN 436 L VG RASG RD R F E D +SR +R+ Sbjct: 254 CILKKLDILRNDGVGIPARASGVLRDARKIGIFKDLYG-DYSPPMESYGDSLSRFLIRVK 312 Query: 437 EVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRW 496 EV + +++ L + F G AEAP GD I+ + + ++ Sbjct: 313 EVEKSFEILESI--ELKECKVKRNAKK---DGFYEGMAEAPPGD-IYMGVKIEKGRVREI 366 Query: 497 RCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTD 536 R + + +RGN +D P + S +S D Sbjct: 367 IIRPPSLVMYHAFSVGIRGNVFTDFPFALDSFGAYFSDAD 406 >UniRef50_UPI0001B5108B coenzyme F420-reducing hydrogenase, alpha subunit n=1 Tax=Streptomyces griseoflavus Tu4000 RepID=UPI0001B5108B Length = 464 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 80/446 (17%), Positives = 137/446 (30%), Gaps = 90/446 (20%) Query: 186 PLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICG 245 P + RL + + +A ++ R E L R E L+ R+CGIC Sbjct: 14 PALTRVEGETALRLRIHDRTVTEARLSIYEAPRFFEALLRGRAH-TEPPDLTSRICGICP 72 Query: 246 FAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLA--CHFTGFDSGF-- 301 A+ + +VE+A G+ V R +R +L E + S L++ L F G D Sbjct: 73 VAYQLSACRAVEDACGVDVDGRLARLRRLLYCGEWIESQTLHIYLLHAPDFLGHDDVIGM 132 Query: 302 --------MQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDM----IQTRQLA 349 + R+++T + E+L G +GG R + ++ R Sbjct: 133 SRSEPAHVRRGLRLKQTGNAVVELLGGRAVHPVSVRLGGFHRTPTRTELRPLAEGLRVAL 192 Query: 350 QQMRREVQ------------ELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRAS 397 VQ E + L+ P G+ + P A + P+ Sbjct: 193 DDAWDTVQWVAGFDFPEAECEADLLALAEPGTYAIESGVPTVVPYDATHPAWSFPLRTFC 252 Query: 398 GHARDTRADHPFVGYGLLPM--------------------------------EVHSEQGC 425 H +T+ H + L + +G Sbjct: 253 DHVTETQVPHSTALHSRLDGRRHLTGSLARYAVSGHLLSPTALEAAASAGLDDPPLREGR 312 Query: 426 D----------VISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPH--RFALGF 473 D + VR EV+ A+ + L + + +P G Sbjct: 313 DGTGQGTVCRNPFRSILVRAVEVFYAV---EEALRIITEYERPASPYVPVPARSGVGHGA 369 Query: 474 AEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDA------------ 521 EAPRG H ++ R T N + LR + + Sbjct: 370 TEAPRGLLYHRYAFDREGRVTDARIIPPTAQNQGAIEEDLRRSVQAALDRGQDSEAELTR 429 Query: 522 --PLIIGSLDPCYSCTDRMTVVDVRK 545 +I + DPC SC+ +++ Sbjct: 430 LCERVIRNHDPCISCSAHFLDLNLET 455 >UniRef50_C8QXK0 Nickel-dependent hydrogenase large subunit n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QXK0_9DELT Length = 496 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 71/471 (15%), Positives = 127/471 (26%), Gaps = 121/471 (25%) Query: 186 PLHVTSDEPGHFRLFV---DGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCG 242 + + GH R+ + D + D + RG E R E+ L+ R CG Sbjct: 6 TIDPVTRIEGHARITITLDDRGLVEDCRLHV-TQLRGFEAFCVGR-PLAEMPSLTARTCG 63 Query: 243 ICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLAC---HFTGFDS 299 IC +H A + + + +++P A +R +L + + SH L+ G D+ Sbjct: 64 ICPVSHLLASAKACDELLAVRIPPAAVRLRQLLNYGQLVQSHALSFFHLASPDLLLGMDA 123 Query: 300 G----------------FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMI 343 + +R ++ E L G R + GG+ R L +++ Sbjct: 124 APEQRNIFGLAAARPEVAKEGIALRRFGQQLIERLAGKRIHPDWVVPGGVSRPLSRENGA 183 Query: 344 QTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDT 403 M + Q +++L +E T I + + G + + Sbjct: 184 AIAAELPGMLQAAQN--NLVLLQGVLENFTAEIAHFANFPSGWLALAGEAGQLEYYDGPL 241 Query: 404 RADHPF-----------------------VGYGLLPMEVHSEQGCDVI-----SRLKV-- 433 R Y P + +RL Sbjct: 242 RLLDQQGEELFSEADPLRYQQQLAEQSEADSYLKSPYHRPQGPEAGLYRVGPLARLNAAR 301 Query: 434 --------------------------------RINEVYTALNMIDYGLDNLPGGPLMVEG 461 R+ E+ L I L + V Sbjct: 302 RCGTPLADEALAAFRELSPQGPVTSSFHYHYARLIEIIHGLEKIQQLLADDTIYDPRVRA 361 Query: 462 FTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGN----- 516 +G EAPRG IH + ++ AT N ++ L+ Sbjct: 362 TAGANAPEGVGICEAPRGTLIHHYRIDEQGRISAVNMMIATGHNSLAIQRGLKQAARAFI 421 Query: 517 ----------------------------TVSDAPLIIGSLDPCYSCTDRMT 539 ++ ++ DPC SC+ Sbjct: 422 NGNGENDGESGKRAESREIAENKEIREGLLNRIEAVLRCYDPCLSCSTHAL 472 >UniRef50_Q30QL7 Nickel-dependent hydrogenase, large subunit n=1 Tax=Sulfurimonas denitrificans DSM 1251 RepID=Q30QL7_SULDN Length = 417 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 71/415 (17%), Positives = 139/415 (33%), Gaps = 73/415 (17%) Query: 191 SDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHST 250 + I D F R +E + + + + + ++ RVCGICG AH Sbjct: 8 IEGEAKLNFNFKENKIDFVDVE-FMSTRNIENILKGKRAF-DALVINPRVCGICGHAHLM 65 Query: 251 AYTTSVENAM-GIQVPERAQMIRAILLEVERLHSHLLNLGLACHFT-GFDSGFMQFFRVR 308 A ++E+ + + ++A++IR + L E + +H L + G ++ Sbjct: 66 ATVQALESCYDNLILSDKAKIIRELTLNFELIQNHFKWFYLTLYPLFGKKQQILKATYPS 125 Query: 309 ETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQ----------- 357 + K ++ G ++GG+ ++ + D+I+ + Q + V+ Sbjct: 126 QLMSKAIAVIGGQYPHTSYAIVGGVACEITEIDLIKVQHYIAQTLKFVEQNLLKVESEVF 185 Query: 358 ---------------ELVDVLLSTPNM-----EQRTVGIG---------RLDPEIARDFS 388 E++D + ++ + R + G + ++ + S Sbjct: 186 LKTEDANSLYDGDLTEILDEIKNSELLGYGKSYDRFISFGENSFFKKGKSVKTKVTHNIS 245 Query: 389 NVGPMVRA--SGHARDTRADHPFVGYGLLPM----------EVHSEQGCDVISRLKVRIN 436 V S A++ + G L +VH + G + SR+ RI Sbjct: 246 LVDVKESQITSSFAKNVSFKDKYYEVGPLSRAMINKTPLIIDVHKKYGDSIFSRILARIY 305 Query: 437 EVYTALNMIDYGLDNLP-GGPLMVEGFTYIPH--RFALGFAEAPRGDDIHWSMTGDNQKL 493 E+ L + + P +E I EA RG IH ++ + Sbjct: 306 EISQLLEHSRGLIKKIDLSQPSYIEPSIDISKLSGSGYSAVEAARGTLIHRVEL-ESGII 364 Query: 494 YRWRCRAATYANWP--------TLRYMLRGNTVSDA---PLIIGSLDPCYSCTDR 537 + T N + + G +SD L+ S D C CT Sbjct: 365 KNYEIITPTQWNLSGGTRENHGVSQRAMVG--LSDVKIAELVFKSFDVCSVCTTH 417 >UniRef50_C0QPV5 Hydrogenase large subunit n=2 Tax=Hydrogenothermaceae RepID=C0QPV5_PERMH Length = 457 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 71/450 (15%), Positives = 136/450 (30%), Gaps = 105/450 (23%) Query: 190 TSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHS 249 + +L + I DA + RG E + E R + ++ R+CGICG +H Sbjct: 11 RVEGEIQLKLIWENRRIKDAFIQN-LNFRGFEFILENRPPL-DALVITPRICGICGHSHL 68 Query: 250 TAYTTSVENAMG-----IQVPERAQMIRAILLEVERLHSHLLNLGL--ACHFTGFD---- 298 A ++E+ I + +A +IR + VE + +H+ L F + Sbjct: 69 IATVKALEDIYRKNGYSIDISYKASLIRNVTHTVEIIQNHIRWFYLFVMPDFLKLEKDKD 128 Query: 299 ----------SGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDM------ 342 + + + +K+ IL+G + GG+ D + D+ Sbjct: 129 ILEDFTPLKGDKWKKALGISNEILKIISILSGQWPHTSYAVPGGVMSDPINTDIVEAISI 188 Query: 343 -----------------------IQTRQLAQQMRR-EVQELVDVLLSTPN-----MEQRT 373 Q ++ + +++ +++ R Sbjct: 189 TDSVIRFFEEEIIGTDINTYLSVESFDQFMDKINKGDLRRFIELTFKNGMEKTGRAYDRF 248 Query: 374 VGIGRLDP-----EIARDFSNVGP-----MVRASGHARD----TRADHPFVGYGLLP--- 416 + + + P + P + S +D +R + + Sbjct: 249 ITVDAILPCVREGVKKKRSCKFDPSRIKEVDSHSFLTKDGTDFSRKRYSWAKAVRYDGLP 308 Query: 417 ----------------MEVHSEQGCDVI-SRLKVRINEV-YTALNMIDYGLDNLPGGPLM 458 + + D R+ RI+E+ AL + Y L P Sbjct: 309 METGPLARKAVSKNSLFQDLISRFGDSYLVRIWARIDEIGRMALTLKSYLLSINTKEPSY 368 Query: 459 VEGFTYIP--HRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANW--------PT 508 ++ I G EA RG +H + K+ ++ T N Sbjct: 369 IKPPVKIENLEGEGTGLIEAARGSLLHRLEL-EKGKIKKYTIITPTTWNLGPRCERYHSP 427 Query: 509 LRYMLRGNTVS-DAPLIIGSLDPCYSCTDR 537 + G S A +I+ S D C CT Sbjct: 428 AEKAIIGLESSLKAEMILRSFDVCSVCTTH 457 >UniRef50_D1ICJ9 Whole genome shotgun sequence of line PN40024, scaffold_246.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D1ICJ9_VITVI Length = 765 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 50/242 (20%), Positives = 91/242 (37%), Gaps = 14/242 (5%) Query: 242 GICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGF 301 + A A++++VE + +VP RAQ IR + E+ R+ +H L L G + Sbjct: 51 YVSTMAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRISNHSLALTTHAMDVGASTPS 110 Query: 302 MQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKD--DMIQTRQLAQQMRREVQEL 359 + RE ++ E ++GAR GG+ +DL + T +A ++ Sbjct: 111 LWASEEREKLLEFYERVSGARMHASFIRPGGVAQDLPLGLCHVTCTELVADWAFSLIKAD 170 Query: 360 VDVLLSTPNMEQR--------TVGIGRLDPEIARDF-SNVGPMVRASGHARDTRADHPFV 410 L + + R +G G + G R D+R P+ Sbjct: 171 PLAFLLSKSRSNRACPSPYPLCLGAGSAQERPVLWWYGRHGLRERVC---WDSRRAAPYD 227 Query: 411 GYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFA 470 + +V D R +RI E+ ++ +I + +P G + + P + Sbjct: 228 VHDQSDPDVPVGTRGDRYDRYCIRIEEMRQSVRIIVQCPNQMPSGMIKADDRKLCPPSRS 287 Query: 471 LG 472 LG Sbjct: 288 LG 289 Score = 78.5 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 1/88 (1%) Query: 450 DNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTL 509 ++ EGF+ +P EAP+G+ + ++ + + YR + RA A+ L Sbjct: 679 TSIHHFEPYTEGFS-VPAPSTYTAVEAPKGEIGVFLVSNGSNRPYRRKIRAPGSAHSQGL 737 Query: 510 RYMLRGNTVSDAPLIIGSLDPCYSCTDR 537 M + + +D IIG+ D DR Sbjct: 738 DSMSKHHMPADVVTIIGTQDIVSGEVDR 765 >UniRef50_O28899 Methylviologen-reducing hydrogenase, subunit alpha (VhuA) n=2 Tax=Archaeoglobaceae RepID=O28899_ARCFU Length = 458 Score = 177 bits (449), Expect = 9e-43, Method: Composition-based stats. Identities = 82/449 (18%), Positives = 148/449 (32%), Gaps = 74/449 (16%) Query: 187 LHVTSDEPGHFRLFVDGENIIDADYRLF--YVHRGMEKLAETRMGYNEVTFLSDRVCGIC 244 ++ S GH ++ + ++ + F RG EK+ + EV + +CGIC Sbjct: 5 INPVSRIEGHAKVTIFLDSSGKVENAFFQATEFRGYEKILSG-LPMEEVPRVVSTICGIC 63 Query: 245 GFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQ- 303 H TA + + G++ + A+++R +LL + H L+L F S + Sbjct: 64 RAIHFTAALKAADQVFGVEASDAAKIVREMLLCAHFIEDHTLSLLALALP-DFLSPEERN 122 Query: 304 --------------FFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLA 349 R R ++++ +IL G L GG + +++ + + Sbjct: 123 IFGVIRNLGELGRELLRKRGYAVRILQILGGRNIHPVTALPGGWAKAPTDEELGLIERYS 182 Query: 350 QQMR----REVQELVDVLLSTPNMEQRTVGIGR--------LDPEIARDFSNVGPMVRAS 397 +++ R V+ L L +E R +G D E ++R S Sbjct: 183 RELLDLGYRMVEVLEAALDMGDGLELRAATLGTEKKGLVNLYDGEQVVKDEEGKEVLRFS 242 Query: 398 GHAR-DTRADHPFVG-YGLLPMEVHSEQGCDV---ISR---------------------- 430 G D + Y L + V ++R Sbjct: 243 GKEYADIITEKSLSWSYSKLTEIKPLGEKLYVVGPLARLKTAELTPKASEIVKTYGVSNN 302 Query: 431 ----LKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSM 486 R E+ A + + GG ++ +G EAPRG IH Sbjct: 303 LLYNHFARAVEIIYAAERLLELSQSYRGG--RIQNEPQKVAGEGVGIVEAPRGTLIHHYW 360 Query: 487 TGDNQKLYRWRCRAATYANWPTLRYML--RGNTVSD-------APLIIGSLDPCYSCTDR 537 T + + AT N + +++ SD + I + DPC +C Sbjct: 361 TDEKGIVRGSNLIVATTHNVRAINHVVGKVAERASDTRNLAEKVEVAIRAFDPCMACATH 420 Query: 538 MTVVDVRKKKSKVVPYKELERYSIERKNS 566 V V + ++ ELE + S Sbjct: 421 -AVNGVIPIEIQIFRDGELEEVYRNYEES 448 >UniRef50_Q24ZF8 Hup-type Ni,Fe-hydrogenase large subunit n=2 Tax=Desulfitobacterium hafniense RepID=Q24ZF8_DESHY Length = 478 Score = 177 bits (449), Expect = 9e-43, Method: Composition-based stats. Identities = 68/452 (15%), Positives = 137/452 (30%), Gaps = 98/452 (21%) Query: 185 GPLHVTSDEPGHFRLFVDGEN-IIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGI 243 + + + EN +I + ++RG E++ E R + ++ + + R+CGI Sbjct: 18 KVIFPFTRIHNPMLVEAYLENGVIQDAFISDTLYRGFEQILEGRPAF-DMPYYTQRICGI 76 Query: 244 CGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG--- 300 C H+ A +VE A+G+ VP + R +++ + L +H+ + L F Sbjct: 77 CSSVHAVAAAFAVEQALGMTVPSNGLIQRNLIMGSDFLQNHIRHFYLMSMPDYFKGPDIP 136 Query: 301 -----------------------FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDL 337 + + + + + G + GG + Sbjct: 137 PFTPHLEGDIRFNTEENQRMTEHYFKAVEISRDAHAAFGVFGGKAPHGHGIVPGGCTMHV 196 Query: 338 LKDDMIQTRQLAQQMRRE-----VQELVDVLLSTPNMEQRTVG------IGRLDPEIARD 386 D + + R Q+ + ++ ++ P G +G Sbjct: 197 DADKINRFRGYLIQILEFINNFMIPDMEFLVERYPEYVHLGKGNGNFLSVGGFTQPDGGT 256 Query: 387 FSNVGPMVRASGHARDTRA---------------DHPF-----------VGYGLLPMEVH 420 G ++ D R HP+ GY + + Sbjct: 257 LFPHGVVLEDKHQPFDDRLILEEVTTAWYKPTPPAHPWQGTTEPDKNQPQGYTWVKAPRY 316 Query: 421 SEQGCDV------------------ISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGF 462 +V + R R+ E L+ L G + Sbjct: 317 QGHALEVGPLARAVIAKEKIIGYGTLGRHWSRVMETKKIAEAAMIWLERLVPGAETLNTK 376 Query: 463 TYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYM---------L 513 +G+ EA RG HW + ++ ++ + N+ + + Sbjct: 377 VQQESGMGIGYVEAMRGTLGHWIKI-EKGRVKHYQIITPSTWNFSSRDEAGNCSVGELSI 435 Query: 514 RGNTVSDAPL-----IIGSLDPCYSCTDRMTV 540 RG T+ L +I S DPC+SC+ + Sbjct: 436 RGLTIKHPELKEAGRVIRSFDPCFSCSVHLID 467 >UniRef50_A0L610 Nickel-dependent hydrogenase, large subunit n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L610_MAGSM Length = 432 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 76/430 (17%), Positives = 133/430 (30%), Gaps = 84/430 (19%) Query: 190 TSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHS 249 + G + V+ E I +F R E L + ++ + + RVC IC H+ Sbjct: 11 RVEGHGGITVAVNEEGIQSCQMSIFEGARFYELLLKGKL-ARDAPGIVCRVCSICSAGHT 69 Query: 250 TAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLAC--HFTGFDSGFMQFFRV 307 A ++E+A+GI V + Q R +L + + SH L+L + G S Sbjct: 70 LASVMALESALGIHVSDTVQGFRTLLNLGQFIESHALHLFALAAPDYLGNASILQMASHF 129 Query: 308 RETSMK----------MAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQ 357 E K + E++ G ++GG+ R RQ Q + +++Q Sbjct: 130 PEQVQKGLEIKRVGNLVQEVVGGRAIHPVNVIVGGLGRRP-------ARQAMQTLLQDLQ 182 Query: 358 ELVDVLLSTPNMEQRTVG--------IGRLDPEIARDFSNVGPMVRASGHARDTRADHPF 409 +D+ LS I + G + ASGH D H + Sbjct: 183 NALDLALSLRGFVASLQNPEMGLQPPILVALRASGARYGLTGTHLAASGHE-DIPVAHFY 241 Query: 410 VGYGLLPMEVHSEQGC---------DVISRLK---------------------------- 432 + + + ++R+ Sbjct: 242 QRVNEKVVRHSTAKQSTYAKKPFMVGALARMVHNGERLTGEAAQLREALLPAQPTTLHNN 301 Query: 433 -VRINEVYTALNMIDYGLDNLPGGPLMVEGFTYI---PHRFALGFAEAPRGDDIHWSMTG 488 + E+ AL + L GP ++ T + + L E PRG H Sbjct: 302 AAQFVELVWALEEAVALCEALQEGPALIPPMTTMGFEGEQMGLAALEVPRGTLYHLYGVN 361 Query: 489 DNQKLYRWRCRAATYANWPTLRYML---RGNTVS-----------DAPLIIGSLDPCYSC 534 L + T N + G + +I + DPC SC Sbjct: 362 GEGVLTQADIITPTAQNLAHVERDFAHGVGYWLEQPQRQQEQLRLYLEMIARAYDPCISC 421 Query: 535 TDRMTVVDVR 544 + + + V+ Sbjct: 422 STHLVDLTVQ 431 >UniRef50_C6A4M9 NiFe hydrogenase II, catalytic subunit alpha n=4 Tax=Thermococcus RepID=C6A4M9_THESM Length = 416 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 72/408 (17%), Positives = 124/408 (30%), Gaps = 56/408 (13%) Query: 189 VTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAH 248 + G + ++ + D ++F R E L R Y +V L R+C IC +H Sbjct: 10 TRVEGNGGAEILIENGEVKDVKVKIFEGPRFFELLTLGRH-YWDVPDLEARICAICYLSH 68 Query: 249 STAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLA--CHFTGFDSGFMQFFR 306 S A +E A+G+ VPE ++R + L E + SH L+L L G+ + Sbjct: 69 SVASVLGIERALGVNVPEEITLLRELGLLGELIESHALHLYLLVAPDLFGYADAIRMASK 128 Query: 307 VRETSMK----------MAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREV 356 E + + E+L G GG R +++ Q + + R Sbjct: 129 HGEVVKEGITIKAFGNYIRELLGGREIHGINIKPGGFGRYPTIEELEQIESQCEALLRPA 188 Query: 357 QELVDVLLS---------TPNMEQRTVGIGRLDPEIARDFSNVGPMV------------R 395 + +V++ + +L E F + + R Sbjct: 189 RRVVNIFAEQEPLGATVQHYIATNEYLYGDKLIAEDGEKFDYLEHIEEKTLPYSFAKQSR 248 Query: 396 ASG-------HARDTRADHPFVGYGLLPMEVHSEQGCDVISRL--KVRINEVYTALNMID 446 G R E H E+ + E+ AL Sbjct: 249 YKGNIFMVGALPRVMLKHDMLTPMAKHFYEEHKEKLASGYVSFNNLAQAIELLYALEKAK 308 Query: 447 YGLDNLPGGPLMVEGFTYIP-HRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYAN 505 L + E P +G+ EAPRG +H + + T N Sbjct: 309 EVAKTLLDKGIEGENVPIEPQEGEGIGYVEAPRGVLVHHYRIDEKGNIAYSNIITPTAFN 368 Query: 506 WPTLRYML------------RGNTVSDAPLIIGSLDPCYSCTDRMTVV 541 + L + + + DPC SC+ + + Sbjct: 369 HGIMELSLYEEARKRYGSSDETTFLQKLEETVRAFDPCISCSVHIVRL 416 >UniRef50_C6YT64 Predicted protein n=2 Tax=Francisella philomiragia RepID=C6YT64_9GAMM Length = 431 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 72/424 (16%), Positives = 139/424 (32%), Gaps = 67/424 (15%) Query: 186 PLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICG 245 P+ + G L + I + R++ R EK E R N + R+CGIC Sbjct: 10 PILARVEGEGALDLRIKDGKIDKCELRIYEPPRYFEKFLEGREP-NAIIDAVARICGICP 68 Query: 246 FAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLAC--HFTGFDSGFM- 302 A+ ++ + ++A I + +R ++ E + SH L++ L F G+ S Sbjct: 69 LAYQAGFSRAYDSAFDITRTQWIDDMRLLMFLGEWIESHYLHVHLLAAPDFLGYRSAIEM 128 Query: 303 ---------QFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMR 353 + +++ + ++L G +GG + L ++ + Sbjct: 129 AKDYPKEVVRGVKLQHLGNDILKLLGGRSVHPNGMKVGGFYKAPLVKEVHALIPKLKDAL 188 Query: 354 REVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVG-PMVRASGHA-----RDTRADH 407 +E +++V+ + ST + T+ + ++ G ++ + G D Sbjct: 189 KEAKDVVEWV-STLSFPDTTIPFKMVSLSHPTEYPVFGDDVITSDGEKFHISEYDDHFRE 247 Query: 408 PFVG--------------------------YGLLPMEV--------HSEQGCDVISRLKV 433 + LP + ++ + Sbjct: 248 FHAPQSTALHSTTVDGQPILLGPLPRINLNFDKLPKHIQEMAHATGVKWPSKNMFHSVVA 307 Query: 434 RINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKL 493 R E Y A+ +N +T + A G EAPRG I D Sbjct: 308 RAIEGYWAIERALQVCENYSYTDTPCVDYT-VKAADAWGAVEAPRGIQIDHIKVNDQGLA 366 Query: 494 YRWRCRAATYANWPTLRYMLR--------GNTVSDA----PLIIGSLDPCYSCTDRMTVV 541 + R A T N P + LR D ++I + DPC SC+ + Sbjct: 367 EKIRISAPTSQNLPCIEADLRIALENFGLDKPEDDIRLHAEMVIRNYDPCISCSAHFLTL 426 Query: 542 DVRK 545 ++ + Sbjct: 427 NIDR 430 >UniRef50_C8WGI5 Nickel-dependent hydrogenase large subunit n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WGI5_EGGLE Length = 430 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 66/431 (15%), Positives = 132/431 (30%), Gaps = 73/431 (16%) Query: 179 NNVVPIGPLH-VTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLS 237 I H + G+ + ++ + + + R E + R + E+ ++S Sbjct: 1 MTKTAIHVDHIARVEGHGNVHVVIEDGEVKTVEMNVVEPARLFESMVRGRR-FEEIPYIS 59 Query: 238 DRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLAC--HFT 295 R+CGIC +H ++E G++V +R + +R +L+ L +H +L + F Sbjct: 60 SRICGICSSSHVVTDLKAIERVFGVEVTDRTRALRELLVYGSYLQNHASHLFVFAAPDFL 119 Query: 296 GFDSG----------FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQT 345 G S F Q ++ ++ + G ++GG ++ + ++ Sbjct: 120 GMPSVFPLAQTDPELFEQALGLKALGNELCTKVGGRSIHPITAVVGGFTHEIEPAEYLEL 179 Query: 346 RQLAQQMRREVQELVDVLLSTPNMEQRTVG--IGRLDPEIARDFSNVGPMVRASGHARD- 402 E VD+ + T G + ++ + + +G D Sbjct: 180 ADKMDAAMDFALEAVDLFRGFEVPDIATAGDMLAMVEDDYYPVECSDQAFFLNAGIVFDA 239 Query: 403 -------------------TRADHPFVGYGLLPM--------------EVHSEQGC---- 425 R Y + +V + + Sbjct: 240 NEVQEHIEEHAVPHSAALLARVRETQSPYFTGALARVNASWQNLGQNAKVAAAKAGLRPP 299 Query: 426 --DVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIP----HRFALGFAEAPRG 479 + + E+ AL+ L + +P A+GF EAPRG Sbjct: 300 EANPFMNNVAQAVEIVDALDRCADLCRKLAEPGAIASSSLPVPFEVKAGRAVGFTEAPRG 359 Query: 480 DDIHWSMTGDNQKLYRWRCRAATYANWPTLRY---MLRGNTVSD----------APLIIG 526 H ++ T N L +L V+D ++ Sbjct: 360 ALFHDLTLDAEGRVTHASILTPTAQNVANLEADMRLLAEKLVADGAAEDVVRLEIEKLVR 419 Query: 527 SLDPCYSCTDR 537 + DPC SC+ Sbjct: 420 AYDPCLSCSVH 430 >UniRef50_B4U5P5 Nickel-dependent hydrogenase large subunit n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U5P5_HYDS0 Length = 439 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 67/432 (15%), Positives = 129/432 (29%), Gaps = 90/432 (20%) Query: 190 TSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHS 249 + +L I A L +R + + + + + + RVCGICG AH Sbjct: 10 RLEGEVELKLEYSKGKIAKAHI-LGTSNRDFSSILKAKPYLDSIILI-PRVCGICGHAHL 67 Query: 250 TAYTTSVENAMGIQVPE-----RAQMIRAILLEVERLHSHLLNLGLACH------FTGF- 297 A ++E+A + + +A ++R I L E + +H+ Sbjct: 68 MASVKAIEDAYKNECSDFHLSTKASLVRYITLLSEMIQNHIRWFYAYFMSEIPKLDRNMV 127 Query: 298 DSGFMQFFRVRETS------MKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQ 351 D + R +K+ + G + GGI D ++ + ++ Sbjct: 128 DYLPFDGEKWRRGIAISNYPIKIIALFGGQWPHNSYAVPGGITSDFTYYELNAAKSFCKE 187 Query: 352 MRREVQ-------------------------ELVDVLLSTPNMEQRTVGIGR---LDPEI 383 + + ++ ++ D + + + GI L Sbjct: 188 LLKSIETYIIGISIDKYLSFSKDELLNHKEGDIGDFIRLSSTFDFFHKGIAYKRFLTGGS 247 Query: 384 ARDFSNVGPMVRASGHARDTR----ADHPF--------VGYGLLPMEV------------ 419 + + + + D + +H F Y E Sbjct: 248 IKGYVDAAVFENGIKESFDVKNIDTKEHEFKKIKEITGAVYNKKRFETGPLARKINSSNS 307 Query: 420 ----HSEQGCDV-ISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPH--RFALG 472 E+ D R+ R++E+ + +I LD + +G Sbjct: 308 LFLELLEEFGDSLFLRVMARVDEIVSLTLLIKDALDAIDIRKPSYIKPPIKEPFTGKGVG 367 Query: 473 FAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANW-------PTLRYMLRGNTVSDAP--L 523 EA RG IH +N + ++ T N + + G + SD L Sbjct: 368 IVEAARGTLIHEINI-ENGFVKDYKIVTPTLWNLGNYDEDMSPAQKSIVGLS-SDVEAYL 425 Query: 524 IIGSLDPCYSCT 535 + S D C SC Sbjct: 426 SLRSFDVCASCV 437 >UniRef50_P22320 NAD-reducing hydrogenase hoxS subunit beta n=5 Tax=Bacteria RepID=HOXH_RALEH Length = 488 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 69/483 (14%), Positives = 137/483 (28%), Gaps = 116/483 (24%) Query: 186 PLHVTSDEPGHFRLFV---DGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCG 242 + + GH ++ V D ++DA + RG EK + + E R+CG Sbjct: 6 VIDPVTRIEGHGKVVVHLDDDNKVVDAKLHVVE-FRGFEKFVQGHPFW-EAPMFLQRICG 63 Query: 243 ICGFAHSTAYTTSVENA------MGIQVPERAQMIRAILLEVERLHSHLLNLGLAC---H 293 IC +H ++++ GI V A+ +R + + L SH Sbjct: 64 ICFVSHHLCGAKALDDMVGVGLKSGIHVTPTAEKMRRLGHYAQMLQSHTTAYFYLIVPEM 123 Query: 294 FTGFDSG----------------FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDL 337 G D+ + +R+ ++ + + G + ++ GG+ +L Sbjct: 124 LFGMDAPPAQRNVLGLIEANPDLVKRVVMLRKWGQEVIKAVFGKKMHGINSVPGGVNNNL 183 Query: 338 LKDDMIQTR----------QLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIA-RD 386 + + Q+ + ++ D + L + D Sbjct: 184 SIAERDRFLNGEEGLLSVDQVIDYAQDGLRLFYDFHQKHRAQVDSFADVPALSMCLVGDD 243 Query: 387 FSNVGPMVRASGHARDTRADHPFVGYGLLP----------------MEVHSEQGCDV--- 427 + R D F + L ++ + V Sbjct: 244 DNVDYYHGRLRIIDDDKHIVREFDYHDYLDHFSEAVEEWSYMKFPYLKELGREQGSVRVG 303 Query: 428 -ISRL----------------------------------KVRINEVYTALNMIDYGLD-- 450 + R+ R E+ A ++ L Sbjct: 304 PLGRMNVTKSLPTPLAQEALERFHAYTKGRTNNMTLHTNWARAIEILHAAEVVKELLHDP 363 Query: 451 NLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLR 510 +L L++ +G EAPRG +H + + AT N + Sbjct: 364 DLQKDQLVLTPPPNAWTGEGVGVVEAPRGTLLHHYRADERGNITFANLVVATTQNNQVMN 423 Query: 511 YMLR--------GN------TVSDAPLIIGSLDPCYSCTDRM-----TVVDVRKKKSKVV 551 +R G+ ++ + I + DPC SC VV V +++ Sbjct: 424 RTVRSVAEDYLGGHGEITEGMMNAIEVGIRAYDPCLSCATHALGQMPLVVSVFDAAGRLI 483 Query: 552 PYK 554 + Sbjct: 484 DER 486 >UniRef50_A8UUB0 Hydrogenase large subunit n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UUB0_9AQUI Length = 448 Score = 171 bits (433), Expect = 6e-41, Method: Composition-based stats. Identities = 67/441 (15%), Positives = 126/441 (28%), Gaps = 107/441 (24%) Query: 201 VDGENIIDADYRLFYV---------HRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTA 251 V+GE + ++ V +RG E+L + + + + RVCGICG AH A Sbjct: 11 VEGEIELKLLWKSGRVDDAFLCAMDYRGFERLLKGKPFL-DALVIVPRVCGICGHAHLMA 69 Query: 252 YTTSVENAMG-----IQVPERAQMIRAILLEVERLHSHLLNLGL--ACHFTGFDSGFM-- 302 ++E+A +Q+ ++A IR + L E L +HL + + Sbjct: 70 CVKAIEDAYSSEGYPVQLSDKALEIRKLTLMCEMLQNHLRWFYMYLLPDIVKLEPSIAEL 129 Query: 303 --------QFFRVRETSM--KMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQM 352 +R ++M K+ + G + GG+ D ++ Q +++ Sbjct: 130 YEPLRGRAWVEALRASNMPIKVIALFGGQWPHTSYAVPGGVVCDPTGYELSQAELFLERL 189 Query: 353 RREV---------QELVDV-----LLSTPNMEQRTVGIGRLD------------------ 380 + +E + + L R + Sbjct: 190 KTFFESWLLGMPLEEYLSLKGRNYLKDIRGDLGRFTEVAIEHNLHEEGRSYDRFITGGEL 249 Query: 381 -----------------PEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVH--- 420 ++ R +G A + G + Sbjct: 250 KPLFRSGFFTREGVSPFDADKVSENDEFTFFRRNGSAYTWSKAARYSGLPCETGPLARQL 309 Query: 421 -----------SEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGF---TYIP 466 G V+ R+ R++E L + + Sbjct: 310 VSGNRVIGSLFRRFGSSVLVRVVARMDEAVRLFTEAQRTLHRIKLDEPSWNRPSVDEKVF 369 Query: 467 HRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPT--------LRYMLRG--N 516 +G EA RG IH + ++ + T N L G + Sbjct: 370 SGRGVGVVEAARGTLIHELEI-EGGRIRSYNIITPTVWNLGPRDAEHLGVAERALLGLDS 428 Query: 517 TVSDAPLIIGSLDPCYSCTDR 537 + A +++ S D C CT Sbjct: 429 ELK-AEIVVRSFDVCSVCTTH 448 >UniRef50_B6YU79 Cytosolic NiFe-hydrogenase, alpha subunit n=11 Tax=Thermococcaceae RepID=B6YU79_THEON Length = 429 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 69/434 (15%), Positives = 134/434 (30%), Gaps = 74/434 (17%) Query: 177 KKNNVVPIGPLH-VTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTF 235 KN +PI H + G + V + + + + R E + + +E Sbjct: 1 MKNLYLPITVDHIARVEGKGGVEIVVGDDGVKEVKLNIIEGPRFFEAITIGK-KLDEALA 59 Query: 236 LSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGL--ACH 293 + R+C C AH + E A+G +V E Q +R +L + + SH L+L L Sbjct: 60 VYPRICSFCSAAHKLTAVEAAEKAVGFEVREEIQALREVLYIGDMIESHALHLYLLVLPD 119 Query: 294 FTGFDSGFMQFFRVRETSM----------KMAEILTGARKTYGLNLIGGIRRDLLKDDMI 343 + G+ + + ++ M + L ++GG + K + Sbjct: 120 YMGYSNPLKMLDKYKKEINIALDLKNLGSWMMDELGARAIHQENVVMGGFGKLPDKTTLE 179 Query: 344 QTRQLAQQMRREVQELVDVLLS------------TPNMEQRTVGIGRLDPEIARDFSNVG 391 + ++ Q+ + ++ + R G I+ Sbjct: 180 KMKKRLQEALPLAEYTFELFSKLEQYEEVEGPIIHMAVRPRGDVYGIYGDAISVSDGFEF 239 Query: 392 PMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDV-----ISRLKVRINEVYTA----- 441 P H + +H F + E G +L R E+Y + Sbjct: 240 PSEGYKKHMVERVVEHSFAKHSFYNGEKPFMTGAISRVVNHADKLYGRAKELYESHKDLL 299 Query: 442 -----------------------LNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPR 478 +++ID L P+ + F + EAPR Sbjct: 300 RPTNPFANNLAQALELVYFMERGIDLIDEALAK---WPIRPRDEVDVKDGFGVSTTEAPR 356 Query: 479 GDDIHWSMTGDNQKLYRWRCRAATYANWPTLR----YMLRGNTVSD-------APLIIGS 527 G ++ D ++ T N + M + D A +++ + Sbjct: 357 GILVYALEVKD-GRVAYADIITPTAFNLAMMEVHVRMMAEKHYNDDPERLKLLAEMVVRA 415 Query: 528 LDPCYSCTDRMTVV 541 DPC SC+ + + Sbjct: 416 YDPCISCSVHVARL 429 >UniRef50_B3E9J3 Nickel-dependent hydrogenase large subunit n=5 Tax=Geobacter RepID=B3E9J3_GEOLS Length = 479 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 78/448 (17%), Positives = 151/448 (33%), Gaps = 99/448 (22%) Query: 187 LHVTSDEPGHFRLFV---DGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGI 243 + + GH ++FV + ++ +A + + RG EK+ M N + ++ R+CG+ Sbjct: 15 IDPVTRIEGHAKVFVNLAEDGSLDNAGLVVNEL-RGFEKILVG-MEANRMPHITARICGV 72 Query: 244 CGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHF---TGFDS- 299 C AH A + ++++A G+ P A ++R ++ +HSH L+L + G D+ Sbjct: 73 CPTAHHIAASNALDHACGVVAPPAAMLLRELMYMGHIIHSHALSLFVLQGPDLVLGLDAD 132 Query: 300 ---------------GFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQ 344 + R+R ++ EI+ G ++ GGI L + Sbjct: 133 PAIRNVVGIVQANPEVAKKALRIRTVGQRLNEIVGGRGTHPVTSVAGGITFVLDSEKRAM 192 Query: 345 TRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMV-RASGHARDT 403 + L + ++ ++L V+ + L +A +S + R S + Sbjct: 193 LQSLVDEGKQLAKDLAPVVKQL-VVTMLERHPAMLTDWVAPSWSVGTVLDNRVSLIQGNI 251 Query: 404 R---------ADHPFVGYGLLPMEVHSE----------QGC-------DVISRL------ 431 R + P Y +E + +G ++R+ Sbjct: 252 RAVDENGITQVEFPVQDYDKYMVESVVDFSYMKRVGFKKGGLLHDYRVGPLARINAMQQF 311 Query: 432 ---------------------------KVRINEVYTALNMIDYGLDNLPGGPLMVEGFTY 464 ++ E+ A+ D L + P Sbjct: 312 STEWANREMEEMLKLGGYPCHITLFQAYAKLVEMIWAIERADDILRD-PAVNGETRVPVK 370 Query: 465 IPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPT----LRYMLRGNTV-- 518 A+G +EAPRG IH ++ + AT N+ + + + + + Sbjct: 371 FQGGRAVGHSEAPRGTLIHDYEIDEDGIVRAANLIVATQQNYAIINRSIEHAAKSHVIGK 430 Query: 519 SD-------APLIIGSLDPCYSCTDRMT 539 SD I DPC SC Sbjct: 431 SDDQALLNAIEFSIRCYDPCLSCATHAV 458 >UniRef50_A0LQC1 F420-non-reducing hydrogenase subunit A n=5 Tax=Deltaproteobacteria RepID=A0LQC1_SYNFM Length = 449 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 62/445 (13%), Positives = 121/445 (27%), Gaps = 103/445 (23%) Query: 187 LHVTSDEPGH--FRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGIC 244 + + GH + +D + F RG EK E + E+ + +R+CGIC Sbjct: 7 IQPVTRIEGHASIAIQLDDRGEVQDSRVHFMSLRGFEKFVEGK-PAEELPRIVNRICGIC 65 Query: 245 GFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHF---------- 294 + H A +V+ G+ P + +R ++ + +L+ Sbjct: 66 PWQHHLASNKAVDRCFGVTPPPAGRKLRELMQAISHSEDKILHFYFLAAPDFVMGPDSDY 125 Query: 295 ---------TGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQT 345 + R+R + + E G ++GG R LL++D + Sbjct: 126 GVRNVIGVAKAHPELAGRVVRMRYATKMILEKFAGKAIHPHAGVVGGFSRVLLEEDRREF 185 Query: 346 RQLAQQMRREVQELVDVLLSTPNMEQRTVGI-----------GRLDPEIARDFSNVGPMV 394 ++M +D T + + G +D A + + + Sbjct: 186 LGKMKEMLEFALFTID-FAKTQVFPKYLDAVASLGVINTGFIGTVDDHGALNLYDGKIRL 244 Query: 395 ---RASGHARDTRA---------------DHPFVGYGLLPMEV-HSEQGC----DVISR- 430 S D + P+ + + + ++R Sbjct: 245 MKPDGSFVDFDPQDYLDYLGEHVEPHSYGKFPYARCWNEGFSLDPLQPRGIYRANTLARI 304 Query: 431 --------------------------------LKVRINEVYTALNMIDYGLDNLPGGPLM 458 R+ E A L++ Sbjct: 305 NVADKMATPRAQAELEEFREKFGRPAQFTLLHHWARLIEEVYACEHAIELLEDPEITDPN 364 Query: 459 VEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYML----- 513 V +G EAPRG IH T + + T N + + Sbjct: 365 VRAKVEPKAGRGVGCLEAPRGTLIHDYTTDSAGMVTKANMIVGTTHNLGPISLSVNQAAR 424 Query: 514 ----RG----NTVSDAPLIIGSLDP 530 RG ++ + + + DP Sbjct: 425 TLIQRGVVDETILNKIEMAVRAYDP 449 >UniRef50_Q9XBW8 HoxH n=1 Tax=Rhodobacter capsulatus RepID=Q9XBW8_RHOCA Length = 503 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 76/446 (17%), Positives = 133/446 (29%), Gaps = 94/446 (21%) Query: 185 GPLHVTSDEPGHFRLFVDG-ENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGI 243 GP + G + +D + L + G+E L E R E+ R+CG+ Sbjct: 27 GPARGETAGQGRVTICLDARGQVRQVQLHLLDLC-GVETLLEGRA-IAEIPEAVQRLCGL 84 Query: 244 CGFAHSTAYTTSVENAMGIQ-VPERAQMIRAILLEVERLHSHLLNLGLACHF---TGFDS 299 C +H A +++ G + A+ +R ++ + + SH + L GFDS Sbjct: 85 CPVSHHLAAVKAMDRIAGYDRLTPTAEKLRRLMQYGQIVQSHAVQLYHLAEPDLLLGFDS 144 Query: 300 ----------------GFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMI 343 + +R ++ +TG R + GG+RR L + Sbjct: 145 EPARRGLVDVARAFPQLATEGVLMRRFGQEVVRAITGGRLRGAGAVPGGMRRPLPRAARD 204 Query: 344 QTRQ----LAQQMRREVQELVDVLLSTPNMEQ---------------------------- 371 Q R + ++ L + + P Sbjct: 205 QLRADVDQVIDWAAGALRVLERLHGTNPAFYDHPPRPAATSWRWSAPSGAVDFYDGRLRA 264 Query: 372 -RTVGIGRLDPEIARDF--------SNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSE 422 G D A + GP +RA G P + + + Sbjct: 265 RDARGATLFDAVPAAAYRGVLAEPSGPGGPHLRALGPETGWYRVGPLARLQVCDLLTSEK 324 Query: 423 QG----------------CDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIP 466 V R+ E+ A +I LD+ + P Sbjct: 325 AETERQRLLAPGDGKPLQGSVFH-HGARLVELLHAAELIRDLLDDPELLGTDLMADRGAP 383 Query: 467 HRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRG----------- 515 R A+G EAPRG + + ++ R +T N + L+G Sbjct: 384 QREAVGVIEAPRGTLLQRYEVDEAGRIRRCTLLLSTRNNSRAMDAALQGVAAQYCDGRRV 443 Query: 516 --NTVSDAPLIIGSLDPCYSCTDRMT 539 + ++ + I + DPC SC Sbjct: 444 TEDLLAHIEVAIRAFDPCLSCAAHAL 469 >UniRef50_C1SPM3 Ni,Fe-hydrogenase I large subunit n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SPM3_9BACT Length = 479 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 62/476 (13%), Positives = 135/476 (28%), Gaps = 126/476 (26%) Query: 186 PLHVTSDEPGHFRLFVDGENIIDADYRL-FYVHRGMEKLAETRMGYNEVTFLSDRVCGIC 244 + + GH + E+ ++ R+ ++RG E++ R + ++ R+CG+C Sbjct: 6 TVDPLTRIEGHMSVETAVESGKVSEVRIAGNMYRGFERMLLGRHPVDSA-RIAQRICGVC 64 Query: 245 GFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHF--TGFDSGFM 302 H + ++E GI P ++R ++L + + H+L+ C S Sbjct: 65 HEVHGVSSVMALEQIFGITPPANGIILRDMILGLHIVTDHILHFYNLCLPDYVNLSSAAG 124 Query: 303 QFFRVRE--------------------TSMKMAEILTGARKTYGLN-------------- 328 + R+ + + + R Sbjct: 125 YNGKDRDLRNISDWLSSSGTAFMQNRTEGNYIKDKDSARRFALNYFEAIKIRSQAAGGLA 184 Query: 329 ------------LIGGIRRDLLKDDMIQTRQLAQ---------------QMRREVQELVD 361 + GGI ++ D +++ + ++ + E D Sbjct: 185 ILGAKVPFIHALMPGGITTEITTDALMKYYRALDATAEFVSSSFMPDVIEIAQRFPEYFD 244 Query: 362 VLLSTPNMEQ-----------RTVGIGRLDPEIARDFSNVGPMVRASGHARD-------- 402 + + T G+ ++ D++ V ++ +S + D Sbjct: 245 IGEAYNTFYAHQSFNSAKGDLFTQGVIADGEKVDFDYNKVKELIGSSYYKADGSPDENAE 304 Query: 403 ----TRADHPFVGYG-------------LLPMEVHSEQGC------DVISRLKVRINEVY 439 + G + + V+ RL R +E Sbjct: 305 GAYSWIKAPRYDGIPLETGPIARAAVGNDEEFKSLLRRLGQKSIKSSVMGRLLARAHESV 364 Query: 440 TALNMIDYGLDNLPGGPLMVEGFTY--IPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWR 497 N + + G + +GF+ A RG +H T K+ ++ Sbjct: 365 MLCNYLYGRTEEYVIGKPAIRAVDLQAPVSGEGIGFSVAARGALVHHI-TAYKGKVTDYK 423 Query: 498 CRAATYAN--------WPTLRYMLRGNTVSD--------APLIIGSLDPCYSCTDR 537 + N + G V+ +I S DPC +C+ Sbjct: 424 MIVPSTWNFGPTVDGRLGVAEKAVLGTPVNYGGVSGSIEVGRVIRSFDPCTACSIH 479 >UniRef50_A6QAV5 Ni-Fe hydrogenase, large subunit HupV n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6QAV5_SULNB Length = 433 Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 75/434 (17%), Positives = 140/434 (32%), Gaps = 80/434 (18%) Query: 179 NNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSD 238 I L + +I D + +RG+E++ + + ++ Sbjct: 1 MKRTVIRKLIEKIEGEAELDYTFANGSIEDVRINFGF-YRGIEEILVGKDP-RDALVITP 58 Query: 239 RVCGICGFAHSTAYTTSVENAM---GIQV--PERAQMIRAILLEVERLHSHLLNLGL--- 290 RVCGIC AH A ++EN G +V +A+ IR L E L +H+ + + Sbjct: 59 RVCGICNHAHLIAAVRALENGYASAGWEVVLSPKAKAIREFTLSCELLQNHIKWMYMTIF 118 Query: 291 --ACHFTGFDSGFMQFFR---VRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQT 345 + +S + T K I G + GG+ D + D+IQ Sbjct: 119 PNLERYLKIESSENYAVKASYFSTTITKALAIFAGQWPHSSYAVPGGVTCDPTQLDIIQA 178 Query: 346 RQLAQQMRREVQEL-----VDVLLSTPNM----------------------------EQR 372 + L ++ R +++ ++ LS ++ R Sbjct: 179 QSLLEECVRFFEQMLTGCTLEAYLSIESVSSLHHIEGDFGKLLHLLGSNGMAKKGQSYDR 238 Query: 373 TV----------------GIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLP 416 + + ++D + + G M +A + P + Sbjct: 239 FIVFADSPLSPAGKSIATSVSKVDTKYVVESEQKGSMAKAVSYKNRMYEVGPLARGMVSK 298 Query: 417 MEV----HSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPL--MVEGFTYIPHRFA 470 + H +++R+ RI+EV L L ++ + + Sbjct: 299 EPIVKNLHKRYKDSMMTRVFARIHEVAQLLEKNREMLKSIRVDEPSCTLSDTLKLYEFEG 358 Query: 471 LGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWP---------TLRYMLRGNTVSDA 521 G EA RG IH T N K+ + T N ++ M+ ++ +A Sbjct: 359 TGTVEAARGSLIHR-TTVSNGKIANYEIITPTQWNLSHGDEKEKGIAVKAMVGSQSMEEA 417 Query: 522 PLIIGSLDPCYSCT 535 I + D C CT Sbjct: 418 DFIFRTFDVCSVCT 431 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.313 0.141 0.389 Lambda K H 0.267 0.0434 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,508,825,527 Number of Sequences: 3077464 Number of extensions: 161929746 Number of successful extensions: 413079 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 1403 Number of HSP's successfully gapped in prelim test: 245 Number of HSP's that attempted gapping in prelim test: 407906 Number of HSP's gapped (non-prelim): 2181 length of query: 569 length of database: 1,040,396,356 effective HSP length: 134 effective length of query: 435 effective length of database: 628,016,180 effective search space: 273187038300 effective search space used: 273187038300 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 96 (41.5 bits)