39 c3amkA_ Probab=100.00  E-value=0  Score=518.34  Aligned_columns=460  Identities=16%

Q ss_pred             CCCCCHHHHCEEEEEECCCCCCCCCCCCCCHHHHHHH-HHHHHHCCCCEEEECCCCCCCCC-CCCCCCCCCCCCCCCCCC
Q ss_conf             8787448708989982443225899988768999974-58799729989999886647799-887453523333655589
Q batch____         2 THLPHWWQNGVIYQIYPKSFQDTTGSGTGDLRGVIQH-LDYLHKLGVDAIWLTPFYVSPQV-DNGYDVANYTAIDPTYGT   79 (551)
Q Consensus         2 ~~~p~W~~~~viY~i~~~~F~d~~~~~~Gd~~gl~~~-Ldylk~LGv~~i~L~Pi~~~~~~-~~GY~~~d~~~id~~~Gt   79 (551)
                      ...|...++.||||+||+.|  +.....|+|++++++ |||||+||||+||||||++++.. +|||+|++|++|+++|||
T Consensus       167 ~~~~~~~~~~~iYE~hv~~~--~~~~~~~~~~~~~~~~l~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~y~av~~~yGt  244 (675)
T c3amkA_         167 HPRPPKPDAPRIYEAHVGMS--GEEPEVSTYREFADNVLPRIRANNYNTVQLMAIMEHSYYASFGYHVTNFFAVSSRSGT  244 (675)
T ss_dssp             SCCCCCCSSCEEEEECSTTC--SSSSSCCCHHHHHHHTHHHHHHTTCCEEEECSCEECSCGGGTTCSCSEEEEECGGGCC
T ss_pred             CCCCCCCCCCEEEEEEECCC--CCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             77888754564899852224--7898747589999989899997599799984862688989857655523560766789


Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf             99999999999988998999995345478654577521567876773352488888787565555687664416766642
Q batch____        80 LDDFDELVTQAKSRGIRIILDMVFNHTSTQHAWFREALNKESPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWHAESEQY  159 (551)
Q Consensus        80 ~~dfk~lV~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (551)
                      ++|||+||++||++||+||||+|+||++.+++|+....+...+...++++.+...                         
T Consensus       245 ~~dfk~LVd~~H~~GI~VIlDvV~NH~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-------------------------  299 (675)
T c3amkA_         245 PEDLKYLVDKAHSLGLRVLMDVVHSHASNNVTDGLNGYDVGQNTHESYFHTGDRG-------------------------  299 (675)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEECCSCEECCTTTSGGGGCSSCCGGGSSBCCGGGG-------------------------
T ss_pred             HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCC-------------------------
T ss_conf             9999999999998898899997125357853004453116888742334168876-------------------------


Q ss_pred             EECCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HCCCCEEEECCHHHHHHH---CCCCCCCCCCCHHHCCCCHHHHHHHHH
Q ss_conf             3127778771136889999999999999998-459989987457762221---134333344200100135368999999
Q batch____       160 YLHLFAPEQADLNWENPAVRAELKKVCEFWA-DRGVDGLRLDVVNLISKD---PRFPEDLDGDGRRFYTDGPRAHEFLHE  235 (551)
Q Consensus       160 ~~~~~~~~~~~ln~~~p~v~~~~~~~~~~w~-e~gvDGfR~D~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (551)
                        ....-+++++|+++|+|+++|+++++||+ +|||||||||++.++...   .....................++++++
T Consensus       300 --~~~~w~~~~~n~~~p~Vr~~i~d~~~~Wi~eygIDGfR~Dav~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~  377 (675)
T c3amkA_         300 --YHKLWDSRLFNYANWEVLRFLLSNLRYWMDEFMFDGFRFDGVTSMLYHHHGINKGFTGNYKEYFSLDTDVDAIVYMML  377 (675)
T ss_dssp             --EETTTTEECBCTTSHHHHHHHHHHHHHHHHHHCCSEEEETTHHHHHBTTTTTTCCCCSCHHHHSSTTBCHHHHHHHHH
T ss_pred             --CCCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEECCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             --167898521179899999999999999998629989998645530323345655444444333466566335899999


Q ss_pred             HHHHHHC-CCCEEEEEEECCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             9999740-598299996138888887662367765510124611345444210245433357889999997655104667
Q batch____       236 MNRDVFT-PRGLMTVGEMSSTSLEHCQRYAALTGSELSMTFNFHHLKVDYPGGEKWTLAKPDFVALKTLFRHWQQGMHNV  314 (551)
Q Consensus       236 ~~~~~~~-~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  314 (551)
                      +++.++. .|+.+++||.+............+ ..+....+++.+....................    +..........
T Consensus       378 ~~~~i~~~~p~~~~iaE~~~~~~~~~~~~~~g-g~gfd~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  452 (675)
T c3amkA_         378 ANHLMHKLLPEATIVAEDVSGMPVLCRPVDEG-GVGFDFRLAMAIPDRWIDYLKNKEDRKWSMSE----IVQTLTNRRYT  452 (675)
T ss_dssp             HHHHHHHHCTTCEEEECCSSCCTTTTSCGGGT-SCCCSEEECTTHHHHHHHHHHHCCGGGCCHHH----HHHHHHCSCTT
T ss_pred             HHHHHHHHCCCEEEEEEEECCCHHHHCCCCCC-CCCCCEEECCHHHHHHHHHHCCCCCCHHHHHH----HHHHHHCCCCC
T ss_conf             99999886698699974407863450001147-98701011736889999986348530136888----88666237682


Q ss_pred             CCEEEEECCCCCCCCCCCCCCCHHHH---------------HHHHHHHHHHHHHCCCCC-EEECCHHHHCCCCCCCCCHH
Q ss_conf             60234413567664211028520237---------------999999999999828970-46657154113788787010
Q batch____       315 AWNALFWCNHDQPRIVSRFGDEGEYR---------------VPAAKMLAMVLHGMQGTP-YIYQGEEIGMTNPHFTRITD  378 (551)
Q Consensus       315 ~~~~~~~~nhd~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~G~P-~iy~G~E~g~~~~~~~~~~~  378 (551)
                      ...++|++|||..+......+.....               .++.++++++++++||+| +||||+|+|+.+........
T Consensus       453 ~~~v~f~enHD~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~l~~~G~p~liy~G~E~G~~~~~d~~~~~  532 (675)
T c3amkA_         453 EKCIAYAESHDDKTIAFLLMDKEMYTGMSDLQPASPTINRGIALQKMIHFITMALGGDGYLNFMGNEFGHPEWIDFPREG  532 (675)
T ss_dssp             SCEEBCSCCCCCCCHHHHHHGGGHHHHTBTTSCCCHHHHHHHHHHHHHHHHHHHHHCSSEEEETTGGGTCCSCCCCCCGG
T ss_pred             CCEEEECCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCC
T ss_conf             01699610068662000126323310000244578677999999999999999948983178401011465788865457


Q ss_pred             CCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHH
Q ss_conf             07500000145654213330123332101476655444677888666766767565556680116877751075489999
Q batch____       379 YRDVESLNMFAELRNDGRDADELLAILASKSRDNSRTPMQWSNGDNAGFTAGEPWIGLGDNYQQINVEAALADDSSVFYT  458 (551)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~  458 (551)
                      .....                             .+.++.|+                       ..+.+.....++++|
T Consensus       533 ~~~~~-----------------------------~~~~~~w~-----------------------~~~~~~~~~~~L~~f  560 (675)
T c3amkA_         533 NNWSY-----------------------------DKCRRQWS-----------------------LVDTDHLRYKYMNAF  560 (675)
T ss_dssp             GTSCC-----------------------------TTSSCCHH-----------------------HHHCTTBSHHHHHHH
T ss_pred             CCCCC-----------------------------CCCCCCCC-----------------------CCCCCCCCHHHHHHH
T ss_conf             68885-----------------------------54665877-----------------------533333323799999


Q ss_pred             HHHHHHHHHHCHHHCCCCEEEEECCCCC-EEEEEEEECCCEEEEEEECCCCCE--EEECCCCC-CCEEEEECCCCCCCCC
Q ss_conf             9999999873811217857999838994-999999718905999998879878--99878677-7149997278776677
Q batch____       459 YQKLIALRKQEAILTWGNYQDLLPNSPV-LWCYRREWKGQTLLVIANLSREIQ--PWQAGQMR-GNWQLVMHNYEEASPQ  534 (551)
Q Consensus       459 ~~~L~~lR~~~~~l~~g~~~~~~~~~~~-v~a~~R~~~~~~~lVv~N~~~~~~--~~~l~~~~-~~~~~~~~~~~~~~~~  534 (551)
                      +|+|++||+++|+|+.|.......+++. |+||.|    +.+|||+|+++.++  .+.++.+. |+|++++++......+
T Consensus       561 ~k~Li~LRk~~paL~~g~~~~~~~~~~~~Viaf~R----~~llvV~N~~~~~~~~~~~i~~p~~G~y~~ilnSd~~~ygG  636 (675)
T c3amkA_         561 DQAMNALEEEFSFLSSSKQIVSDMNEKDKVIVFER----GDLVFVFNFHPNKTYKGYKVGCDLPGKYRVALDSDALVFGG  636 (675)
T ss_dssp             HHHHHHHHHHHCGGGCCCEEEEEEETTTTEEEEEE----TTEEEEEECCSSCCEEEEEEEESSCSEEEEEEETTSGGGTC
T ss_pred             HHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEE----CCEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCHHCCC
T ss_conf             99999998748302078289996338984999998----88899997649852433784328996599985075203088


Q ss_pred             C---------------------CEEEECCCEEEEEEEC
Q ss_conf             6---------------------1589889718999979
Q batch____       535 P---------------------CAMNLRPFEAVWWLQK  551 (551)
Q Consensus       535 ~---------------------~~~~L~p~~~~~l~~~  551 (551)
                      +                     .+|+|+|++++||.++
T Consensus       637 ~~~~~~~~~~~~~~~~~~~~~~~~i~lPp~s~~Vl~~~  674 (675)
T c3amkA_         637 HGRVGHDVDHFTSPEGMNRPNSFKVLSPPRTCVAYYRV  674 (675)
T ss_dssp             CCCSCSSCCEECEECCCCCSEEEEEEECTTEEEEEEEC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEC
T ss_conf             77566652001445547844028999389258999837