28 c1cygA_ Probab=100.00  E-value=0  Score=543.29  Aligned_columns=442  Identities=25%

Q ss_pred             CCHHHHCEEEEEECCCCCCCCCCCC------------------CCHHHHHHHHH--HHHHCCCCEEEECCCCC-------
Q ss_conf             7448708989982443225899988------------------76899997458--79972998999988664-------
Q batch____         5 PHWWQNGVIYQIYPKSFQDTTGSGT------------------GDLRGVIQHLD--YLHKLGVDAIWLTPFYV-------   57 (551)
Q Consensus         5 p~W~~~~viY~i~~~~F~d~~~~~~------------------Gd~~gl~~~Ld--ylk~LGv~~i~L~Pi~~-------   57 (551)
                      |.||+++|||||+|+||+|+|..+.                  |||+||++|||  |||+||||+||||||++       
T Consensus         6 ~~~w~~~~iY~i~~drF~~g~~~~~~~~~~~~~~~~~~~~~~gGd~~gi~~kLd~pYl~~LGv~~i~l~P~~~~~~~~~~   85 (680)
T c1cygA_           6 KVNFTSDVVYQIVVDRFVDGNTSNNPSGALFSSGCTNLRKYCGGDWQGIINKINDGYLTDMGVTAIWISQPVENVFSVMN   85 (680)
T ss_dssp             TTCCTTCCEEEECGGGTCCSCGGGCCCGGGBCGGGCSTTSBCCCCHHHHHHHHHTSTTTTTTCCEEEECCCEEECCCCCS
T ss_pred             HHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHCCCCEEEECCCCCCCCCCCC
T ss_conf             15641574699932001378888887665566676554441578599999762887799729989998775146665555


Q ss_pred             ---CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHCCCCCCCCCCEEECCCCC
Q ss_conf             ---77998874535233336555899999999999998899899999534547865457752156787677335248888
Q batch____        58 ---SPQVDNGYDVANYTAIDPTYGTLDDFDELVTQAKSRGIRIILDMVFNHTSTQHAWFREALNKESPYRQFYIWRDGEP  134 (551)
Q Consensus        58 ---~~~~~~GY~~~d~~~id~~~Gt~~dfk~lV~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  134 (551)
                         ....+|||++.||++|||+|||++|||+||++||++||+||||+|+||+|.++.|++........+.+++++.+..+
T Consensus        86 ~~~~~~~~~GY~~~d~~~id~~~Gt~~dfk~lV~~aH~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (680)
T c1cygA_          86 DASGSASYHGYWARDFKKPNPFFGTLSDFQRLVDAAHAKGIKVIIDFAPNHTSPASETNPSYMENGRLYDNGTLLGGYTN  165 (680)
T ss_dssp             SSSCCCSTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEECCSSCTTSTTTTCEEETTEEEECSTT
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             66676777775656243356332899999999999998898899999623368877543200015734546530467887


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCCCCC
Q ss_conf             87875655556876644167666423127778771136889999999999999998459989987457762221134333
Q batch____       135 ETPPNNWRSKFGGSAWRWHAESEQYYLHLFAPEQADLNWENPAVRAELKKVCEFWADRGVDGLRLDVVNLISKDPRFPED  214 (551)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~~~~~~~~w~e~gvDGfR~D~~~~~~~~~~~~~~  214 (551)
                           .....+....+.......+..++.+ .+++|||++||+|+++|++++++|+++||||||||+++++..       
T Consensus       166 -----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~n~~v~~~~~~~~~~w~~~giDGfR~D~~~~~~~-------  232 (680)
T c1cygA_         166 -----DANMYFHHNGGTTFSSLEDGIYRNL-FDLADLNHQNPVIDRYLKDAVKMWIDMGIDGIRMDAVKHMPF-------  232 (680)
T ss_dssp             -----CTTCCBCCSCBCCCSSHHHHHSSBS-TTEEEBCTTSHHHHHHHHHHHHHHHTTTCCEEEESCGGGSCS-------
T ss_pred             -----CCCCCCCCCCCCCCCCCCCCEECCC-CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCH-------
T ss_conf             -----6566533668875566563100577-888854689999999999999999844588377614103899-------


Q ss_pred             CCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf             34420010013536899999999997405982999961388888876623677655101246113454442102454333
Q batch____       215 LDGDGRRFYTDGPRAHEFLHEMNRDVFTPRGLMTVGEMSSTSLEHCQRYAALTGSELSMTFNFHHLKVDYPGGEKWTLAK  294 (551)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (551)
                                      ++++++++.++...+.++++|.+.....................+++.+..........   ..
T Consensus       233 ----------------~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  293 (680)
T c1cygA_         233 ----------------GWQKSLMDEIDNYRPVFTFGEWFLSENEVDANNHYFANESGMSLLDFRFGQKLRQVLRN---NS  293 (680)
T ss_dssp             ----------------HHHHHHHHHHHHHCCCEEEECCCCCTTCCCHHHHHHHHHSSCEEBCHHHHHHHHHHHTT---CS
T ss_pred             ----------------HHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHCCCCCCEEECCHHHHHHHHHHCC---CC
T ss_conf             ----------------89999999986218808999864477532201333036777145420799999998604---87


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHCCCCCCC
Q ss_conf             57889999997655104667602344135676642110285202379999999999998289704665715411378878
Q batch____       295 PDFVALKTLFRHWQQGMHNVAWNALFWCNHDQPRIVSRFGDEGEYRVPAAKMLAMVLHGMQGTPYIYQGEEIGMTNPHFT  374 (551)
Q Consensus       295 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~nhd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~P~iy~G~E~g~~~~~~~  374 (551)
                      .....+.+.+.............+.|++|||..|.....++.     ++.+++++++|++||+|+||||+|+|+.+...+
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~v~f~~nHD~~R~~~~~~~~-----~~~~~a~~~~l~~pG~P~iyyG~E~g~~~~~~~  368 (680)
T c1cygA_         294 DNWYGFNQMIQDTASAYDEVLDQVTFIDNHDMDRFMIDGGDP-----RKVDMALAVLLTSRGVPNIYYGTEQYMTGNGDP  368 (680)
T ss_dssp             CCHHHHHHHHHHHHHHCTTGGGCEECSCCTTSCCSCCTTCCT-----HHHHHHHHHHHHSSSEEEEETTGGGTCCCCSTT
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHCCCH-----HHHHHHHHHHHHHCCCEEEECCEECCCCCCCCC
T ss_conf             789999999988764188624328960578755032317999-----999999999999089719995635243687686


Q ss_pred             CCHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHH
Q ss_conf             70100750000014565421333012333210147665544467788866676676756555668011687775107548
Q batch____       375 RITDYRDVESLNMFAELRNDGRDADELLAILASKSRDNSRTPMQWSNGDNAGFTAGEPWIGLGDNYQQINVEAALADDSS  454 (551)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~  454 (551)
                      .                                     .|.+|.|.+....                             
T Consensus       369 ~-------------------------------------~r~~~~~~~~~~~-----------------------------  382 (680)
T c1cygA_         369 N-------------------------------------NRKMMSSFNKNTR-----------------------------  382 (680)
T ss_dssp             G-------------------------------------GGCCCCCCCSCSH-----------------------------
T ss_pred             C-------------------------------------CCCCCCCCCCCCH-----------------------------
T ss_conf             5-------------------------------------4321588988858-----------------------------


Q ss_pred             HHHHHHHHHHHHHHCHHHCCCCEEEEECCCCCEEEEEEEECCCEEEEEEECCCCCEEEECCCCCCCEEEEECCCCCCCCC
Q ss_conf             99999999999873811217857999838994999999718905999998879878998786777149997278776677
Q batch____       455 VFYTYQKLIALRKQEAILTWGNYQDLLPNSPVLWCYRREWKGQTLLVIANLSREIQPWQAGQMRGNWQLVMHNYEEASPQ  534 (551)
Q Consensus       455 ~~~~~~~L~~lR~~~~~l~~g~~~~~~~~~~~v~a~~R~~~~~~~lVv~N~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  534 (551)
                      +++++|+|++|||++|+|+.|.++.+..++ .|++|.|+.+++.++|++|++............................
T Consensus       383 ~~~~~~~L~~lR~~~~al~~G~~~~~~~~~-~v~af~R~~~~~~~~v~~N~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~  461 (680)
T c1cygA_         383 AYQVIQKLSSLRRNNPALAYGDTEQRWING-DVYVYERQFGKDVVLVAVNRSSSSNYSITGLFTALPAGTYTDQLGGLLD  461 (680)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHCEEEEEEECS-SEEEEEEEETTEEEEEEEECCSSCCEEECSCBCSSCSEEECCTTTTTTC
T ss_pred             HHHHHHHHHHHHHHCHHHHCCEEEEEEECC-CEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             999999999998768322157178995079-4899999629942998404555554311222223221222210013455


Q ss_pred             CCEEEECCCEEEEEEE
Q ss_conf             6158988971899997
Q batch____       535 PCAMNLRPFEAVWWLQ  550 (551)
Q Consensus       535 ~~~~~L~p~~~~~l~~  550 (551)
                      ...++...-.+++-+.
T Consensus       462 ~~~~t~~~~~~~~t~~  477 (680)
T c1cygA_         462 GNTIQVGSNGSVNAFD  477 (680)
T ss_dssp             CCCEEECGGGBBCCEE
T ss_pred             CCEEEECCCCCEEEEE
T ss_conf             5202320456403564