56 d1pama4 Probab=100.00  E-value=0  Score=507.77  Aligned_columns=367  Identities=26%

Q ss_pred             CCHHHHCEEEEEECCCCCCCCCCCC------------------CCHHHHHHHHH--HHHHCCCCEEEECCCCCCC-----
Q ss_conf             7448708989982443225899988------------------76899997458--7997299899998866477-----
Q batch____         5 PHWWQNGVIYQIYPKSFQDTTGSGT------------------GDLRGVIQHLD--YLHKLGVDAIWLTPFYVSP-----   59 (551)
Q Consensus         5 p~W~~~~viY~i~~~~F~d~~~~~~------------------Gd~~gl~~~Ld--ylk~LGv~~i~L~Pi~~~~-----   59 (551)
                      |+||+++|||||+|++|+|++.++.                  |||+||++|||  |||+||||+||||||++++     
T Consensus         9 ~~w~~~~viY~i~~~~F~~~d~~~~~~~~~~~~~~~~~~~~~gGd~~gi~~kLD~~YLk~LGv~~I~L~Pi~~~~~~~~~   88 (406)
T d1pama4           9 KQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGSCTNLRLYCGGDWQGIINKINDGYLTGMGITAIWISQPVENIYSVIN   88 (406)
T ss_dssp             CSCCTTCCEEECCGGGTCCSCGGGCCCGGGBCTTCCSTTSBCCCCHHHHHHHHHTTTTGGGTCCEEEECCCEEECCCCEE
T ss_pred             HHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHCCCCEEEECCCCCCCCCCCC
T ss_conf             33530282899821113577867676666666676665564688689999744988899629989998776346554445


Q ss_pred             ------CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHCCCCCCCCCCEEECCCC
Q ss_conf             ------99887453523333655589999999999999889989999953454786545775215678767733524888
Q batch____        60 ------QVDNGYDVANYTAIDPTYGTLDDFDELVTQAKSRGIRIILDMVFNHTSTQHAWFREALNKESPYRQFYIWRDGE  133 (551)
Q Consensus        60 ------~~~~GY~~~d~~~id~~~Gt~~dfk~lV~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~d~~~~~~~~  133 (551)
                            ..+|||+|+||++|||+|||++|||+||++||++||+||||+|+||||.+++|++........+.+++.+....
T Consensus        89 ~~~~~~~~~~GY~~~d~~~id~~~Gt~~dfk~Lv~~~H~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (406)
T d1pama4          89 YSGVNNTAYHGYWARDFKKTNPAYGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLYDNGNLLGGYT  168 (406)
T ss_dssp             ETTEEECCTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEECCSSCTTSTTTTCEEETTEEEECST
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC
T ss_conf             56667677777465745433734389999999999998789899997604524687632100002465556766466677


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCCCC
Q ss_conf             88787565555687664416766642312777877113688999999999999999845998998745776222113433
Q batch____       134 PETPPNNWRSKFGGSAWRWHAESEQYYLHLFAPEQADLNWENPAVRAELKKVCEFWADRGVDGLRLDVVNLISKDPRFPE  213 (551)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~~~~~~~~w~e~gvDGfR~D~~~~~~~~~~~~~  213 (551)
                      ......-......      +..........+...+++||+++|+|++++++++++|+++||||||+|++.+++.      
T Consensus       169 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~dln~~~p~v~~~~~~~~~~w~e~giDGfR~D~~~~~~~------  236 (406)
T d1pama4         169 NDTQNLFHHYGGT------DFSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMWLDLGVDGIRVDAVKHMPF------  236 (406)
T ss_dssp             TCTTCCBCCSCBC------CCSSHHHHHHSBSTTEEEBCTTSHHHHHHHHHHHHHHHHTTCCEEEETTGGGSCH------
T ss_pred             CCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCHHHCCH------
T ss_conf             6666734666777------7777676200685535431589889999999999999844997888757565898------


Q ss_pred             CCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf             33442001001353689999999999740598299996138888887662367765510124611345444210245433
Q batch____       214 DLDGDGRRFYTDGPRAHEFLHEMNRDVFTPRGLMTVGEMSSTSLEHCQRYAALTGSELSMTFNFHHLKVDYPGGEKWTLA  293 (551)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (551)
                                       .+++++++.++..++.++++|++....+................+++.+..........   .
T Consensus       237 -----------------~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  296 (406)
T d1pama4         237 -----------------GWQKSFMATINNYKPVFTFGEWFLGVNEISPEYHQFANESGMSLLDFRFAQKARQVFRD---N  296 (406)
T ss_dssp             -----------------HHHHHHHHHHHHHSCCEEEECCCCCTTCCCHHHHHHHHHSSSEEBCHHHHHHHHHHHTT---C
T ss_pred             -----------------HHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHC---C
T ss_conf             -----------------99999999985159639998311675245346652366677122071799999999708---8


Q ss_pred             CCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHCCCCCC
Q ss_conf             35788999999765510466760234413567664211028520237999999999999828970466571541137887
Q batch____       294 KPDFVALKTLFRHWQQGMHNVAWNALFWCNHDQPRIVSRFGDEGEYRVPAAKMLAMVLHGMQGTPYIYQGEEIGMTNPHF  373 (551)
Q Consensus       294 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~nhd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~P~iy~G~E~g~~~~~~  373 (551)
                      ......+.+.+.............++|++|||+.|..+..++     ..+++++++++|++||+|+||||+|+|+++...
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~R~~~~~~~-----~~~~~~a~~~~~~~pG~P~iy~G~E~g~~g~~d  371 (406)
T d1pama4         297 TDNMYGLKAMLEGSEVDYAQVNDQVTFIDNHDMERFHTSNGD-----RRKLEQALAFTLTSRGVPAIYYGSEQYMSGGND  371 (406)
T ss_dssp             SSCHHHHHHHHHHHHHHSTTGGGCEECSCCTTSCCSCCTTSC-----HHHHHHHHHHHHHSSSEEEEETTGGGTCCCCST
T ss_pred             CCCHHHHHHHHHHHHHHCCCHHHCEEECCCCCCCHHHHHCCC-----HHHHHHHHHHHHHHCCCEEEECCHHCCCCCCCC
T ss_conf             877899999985234315670210431678762235430582-----899999999999828971987671015078856


Q ss_pred             CCCHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHH
Q ss_conf             87010075000001456542133301233321014766554446778886667667675655566801168777510754
Q batch____       374 TRITDYRDVESLNMFAELRNDGRDADELLAILASKSRDNSRTPMQWSNGDNAGFTAGEPWIGLGDNYQQINVEAALADDS  453 (551)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~  453 (551)
                      +.                                     .|.+|.|.+....                            
T Consensus       372 ~~-------------------------------------~r~~~~~~~~~~~----------------------------  386 (406)
T d1pama4         372 PD-------------------------------------NRARLPSFSTTTT----------------------------  386 (406)
T ss_dssp             TG-------------------------------------GGCCCCCCCSCSH----------------------------
T ss_pred             HH-------------------------------------HCCCCCCCCCCHH----------------------------
T ss_conf             32-------------------------------------2454788756418----------------------------


Q ss_pred             HHHHHHHHHHHHHHHCHHHCC
Q ss_conf             899999999999873811217
Q batch____       454 SVFYTYQKLIALRKQEAILTW  474 (551)
Q Consensus       454 ~~~~~~~~L~~lR~~~~~l~~  474 (551)
                       +++++|+|++||+++|||+.
T Consensus       387 -~~~~~~~L~~lR~~~paL~~  406 (406)
T d1pama4         387 -AYQVIQKLAPLRKSNPAIAY  406 (406)
T ss_dssp             -HHHHHHHHTTHHHHCHHHHC
T ss_pred             -HHHHHHHHHHHHHHCCCCCC
T ss_conf             -99999999999987621359


