BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (150 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_A4WEY5 Ribosome maturation factor rimP n=181 Tax=Proteo... 288 4e-77 UniRef50_A1ST43 Ribosome maturation factor rimP n=90 Tax=Gammapr... 207 1e-52 UniRef50_Q15V74 Ribosome maturation factor rimP n=8 Tax=Gammapro... 192 2e-48 UniRef50_B0TQA4 Ribosome maturation factor rimP n=34 Tax=Gammapr... 173 2e-42 UniRef50_A6VU27 Ribosome maturation factor rimP n=18 Tax=Gammapr... 145 3e-34 UniRef50_A9N8V8 Ribosome maturation factor rimP n=6 Tax=Coxiella... 145 5e-34 UniRef50_Q3J9B4 Ribosome maturation factor rimP n=4 Tax=Gammapro... 143 2e-33 UniRef50_Q31GK7 Ribosome maturation factor rimP n=2 Tax=Gammapro... 139 3e-32 UniRef50_B1J268 Ribosome maturation factor rimP n=21 Tax=Gammapr... 137 1e-31 UniRef50_B5JRQ8 Putative uncharacterized protein n=2 Tax=Gammapr... 136 3e-31 UniRef50_D0L0S8 Putative uncharacterized protein n=1 Tax=Halothi... 135 4e-31 UniRef50_C8X0H0 Putative uncharacterized protein n=1 Tax=Desulfo... 134 7e-31 UniRef50_A1WXV3 Ribosome maturation factor rimP n=3 Tax=Gammapro... 129 2e-29 UniRef50_Q5WT34 Ribosome maturation factor rimP n=5 Tax=Legionel... 129 3e-29 UniRef50_A4BTQ0 Putative uncharacterized protein n=1 Tax=Nitroco... 129 3e-29 UniRef50_A8PNL6 15 kDa protein n=1 Tax=Rickettsiella grylli RepI... 128 4e-29 UniRef50_Q0A795 Ribosome maturation factor rimP n=1 Tax=Alkalili... 128 4e-29 UniRef50_B8GP00 Ribosome maturation factor rimP n=1 Tax=Thioalka... 128 5e-29 UniRef50_Q30WJ2 Ribosome maturation factor rimP n=1 Tax=Desulfov... 119 2e-26 UniRef50_A1AV97 Ribosome maturation factor rimP n=3 Tax=Bacteria... 119 3e-26 UniRef50_Q6FF42 Ribosome maturation factor rimP n=21 Tax=Moraxel... 118 6e-26 UniRef50_A1B584 Ribosome maturation factor rimP n=28 Tax=Bacteri... 117 9e-26 UniRef50_C8NBH5 BCR/YhbC family protein n=1 Tax=Cardiobacterium ... 116 2e-25 UniRef50_A5EWZ1 Ribosome maturation factor rimP n=1 Tax=Dichelob... 116 2e-25 UniRef50_B9ZLN5 Putative uncharacterized protein n=1 Tax=Thioalk... 114 9e-25 UniRef50_D1U698 Putative uncharacterized protein n=1 Tax=Desulfo... 112 3e-24 UniRef50_Q1GCH5 Ribosome maturation factor rimP n=5 Tax=Rhodobac... 112 4e-24 UniRef50_B9E1J8 Ribosome maturation factor rimP n=15 Tax=Clostri... 110 2e-23 UniRef50_C9R8Y0 Putative uncharacterized protein n=1 Tax=Ammonif... 109 2e-23 UniRef50_C7LRI2 Putative uncharacterized protein n=1 Tax=Desulfo... 109 3e-23 UniRef50_Q1GXD8 Ribosome maturation factor rimP n=16 Tax=Betapro... 107 1e-22 UniRef50_C7MNM1 Uncharacterized conserved protein n=4 Tax=Coriob... 107 1e-22 UniRef50_C6C0D6 Ribosome maturation factor rimP n=1 Tax=Desulfov... 107 1e-22 UniRef50_Q3IYN8 Ribosome maturation factor rimP n=10 Tax=Rhodoba... 107 2e-22 UniRef50_B5YEH1 Ribosome maturation factor rimP n=2 Tax=Dictyogl... 107 2e-22 UniRef50_Q2VZU7 Ribosome maturation factor rimP n=4 Tax=Alphapro... 106 2e-22 UniRef50_Q5F799 Ribosome maturation factor rimP n=27 Tax=Neisser... 105 3e-22 UniRef50_A4XL73 Ribosome maturation factor rimP n=2 Tax=Clostrid... 105 4e-22 UniRef50_B8FR10 Ribosome maturation factor rimP n=2 Tax=Desulfit... 105 5e-22 UniRef50_Q895K1 Ribosome maturation factor rimP n=1 Tax=Clostrid... 105 5e-22 UniRef50_B6IVF3 Ribosome maturation factor rimP n=1 Tax=Rhodospi... 104 7e-22 UniRef50_B5EMC8 Ribosome maturation factor rimP n=2 Tax=Acidithi... 104 8e-22 UniRef50_Q14K22 Ribosome maturation factor rimP n=15 Tax=Francis... 103 1e-21 UniRef50_B0K1E0 Ribosome maturation factor rimP n=18 Tax=Clostri... 103 1e-21 UniRef50_D1Y7J0 Putative uncharacterized protein n=1 Tax=Pyramid... 103 1e-21 UniRef50_A1AML8 Ribosome maturation factor rimP n=8 Tax=Desulfur... 103 2e-21 UniRef50_Q72EQ8 Ribosome maturation factor rimP n=3 Tax=Desulfov... 102 3e-21 UniRef50_Q1NIJ0 Putative uncharacterized protein n=2 Tax=Deltapr... 102 3e-21 UniRef50_C5VSJ6 Putative uncharacterized protein n=1 Tax=Clostri... 102 3e-21 UniRef50_Q97I55 Ribosome maturation factor rimP n=1 Tax=Clostrid... 102 3e-21 UniRef50_A8GW29 Ribosome maturation factor rimP n=13 Tax=Rickett... 102 5e-21 UniRef50_B2I724 Ribosome maturation factor rimP n=20 Tax=Xanthom... 102 5e-21 UniRef50_C6D2F6 Putative uncharacterized protein n=3 Tax=Bacilla... 100 1e-20 UniRef50_Q3A4B0 Ribosome maturation factor rimP n=3 Tax=Desulfur... 100 1e-20 UniRef50_C6LLB2 Putative uncharacterized protein n=4 Tax=Clostri... 100 1e-20 UniRef50_Q2RJM9 Ribosome maturation factor rimP n=1 Tax=Moorella... 100 1e-20 UniRef50_C0QTL6 Ribosome maturation factor rimP n=4 Tax=Hydrogen... 100 2e-20 UniRef50_C4Z5N3 Ribosome maturation factor rimP n=10 Tax=Bacteri... 99 3e-20 UniRef50_C0GUB7 Putative uncharacterized protein n=1 Tax=Desulfo... 99 4e-20 UniRef50_Q0SSD0 Ribosome maturation factor rimP n=16 Tax=Clostri... 99 5e-20 UniRef50_D0LZ93 Putative uncharacterized protein n=1 Tax=Haliang... 99 5e-20 UniRef50_B0THQ9 Ribosome maturation factor rimP n=1 Tax=Heliobac... 98 7e-20 UniRef50_B4U6H1 Ribosome maturation factor rimP n=3 Tax=Aquifica... 98 8e-20 UniRef50_A6NTX5 Putative uncharacterized protein n=1 Tax=Bactero... 97 1e-19 UniRef50_B1LX00 Ribosome maturation factor rimP n=6 Tax=Methylob... 97 2e-19 UniRef50_Q3AB94 Ribosome maturation factor rimP n=1 Tax=Carboxyd... 97 2e-19 UniRef50_C4V3N9 Protein of hypothetical function DUF150 n=1 Tax=... 96 3e-19 UniRef50_A8MHI0 Ribosome maturation factor rimP n=11 Tax=Clostri... 96 3e-19 UniRef50_Q8RHJ4 Ribosome maturation factor rimP n=9 Tax=Fusobact... 96 3e-19 UniRef50_D1BM56 Putative uncharacterized protein n=4 Tax=Veillon... 96 3e-19 UniRef50_D2RKW8 Putative uncharacterized protein n=2 Tax=Acidami... 96 4e-19 UniRef50_C6NSC0 Transcription termination protein NusA-like prot... 96 5e-19 UniRef50_A9HF10 Ribosome maturation factor rimP n=10 Tax=Acetoba... 95 5e-19 UniRef50_Q6AJY2 Ribosome maturation factor rimP n=1 Tax=Desulfot... 95 7e-19 UniRef50_A7HZ90 Ribosome maturation factor rimP n=1 Tax=Parvibac... 94 1e-18 UniRef50_A8EYF2 Ribosome maturation factor rimP n=1 Tax=Ricketts... 94 2e-18 UniRef50_Q09BT8 YlxS n=1 Tax=Stigmatella aurantiaca DW4/3-1 RepI... 93 2e-18 UniRef50_A0LHL6 Ribosome maturation factor rimP n=1 Tax=Syntroph... 93 3e-18 UniRef50_B8FCY3 Ribosome maturation factor rimP n=1 Tax=Desulfat... 92 4e-18 UniRef50_Q47D92 Ribosome maturation factor rimP n=2 Tax=Betaprot... 92 4e-18 UniRef50_Q2LWU4 Ribosome maturation factor rimP n=1 Tax=Syntroph... 92 4e-18 UniRef50_A6T0Z0 Ribosome maturation factor rimP n=7 Tax=Betaprot... 92 6e-18 UniRef50_B8GX01 Ribosome maturation factor rimP n=4 Tax=Caulobac... 91 9e-18 UniRef50_A5FV18 Ribosome maturation factor rimP n=2 Tax=Acetobac... 91 9e-18 UniRef50_A9G896 Ribosome maturation factor rimP n=1 Tax=Sorangiu... 91 9e-18 UniRef50_C6XRW8 Putative uncharacterized protein n=1 Tax=Hirschi... 91 1e-17 UniRef50_B5YJX5 Ribosome maturation factor rimP n=1 Tax=Thermode... 91 1e-17 UniRef50_D1B0G8 Putative uncharacterized protein n=1 Tax=Sulfuro... 91 1e-17 UniRef50_A9VT54 Ribosome maturation factor rimP n=6 Tax=Bacillus... 91 1e-17 UniRef50_A9KNW8 Ribosome maturation factor rimP n=13 Tax=Clostri... 91 1e-17 UniRef50_C3P5L9 Ribosome maturation factor rimP n=253 Tax=Firmic... 91 2e-17 UniRef50_B2A393 Ribosome maturation factor rimP n=1 Tax=Natranae... 89 3e-17 UniRef50_B9DPF1 Ribosome maturation factor rimP n=13 Tax=Bacilla... 89 4e-17 UniRef50_A4SY80 Ribosome maturation factor rimP n=2 Tax=Polynucl... 89 5e-17 UniRef50_Q2RMS3 Ribosome maturation factor rimP n=2 Tax=cellular... 89 5e-17 UniRef50_B8CW69 Ribosome maturation factor rimP n=1 Tax=Halother... 89 6e-17 UniRef50_B0T164 Ribosome maturation factor rimP n=6 Tax=Alphapro... 89 6e-17 UniRef50_C1TMK4 Uncharacterized conserved protein n=1 Tax=Dethio... 88 7e-17 UniRef50_A7H9F0 Ribosome maturation factor rimP n=5 Tax=Myxococc... 88 8e-17 UniRef50_Q1IIT1 Ribosome maturation factor rimP n=1 Tax=Candidat... 88 8e-17 UniRef50_Q0C5Z8 Ribosome maturation factor rimP n=1 Tax=Hyphomon... 88 8e-17 UniRef50_Q01W33 Ribosome maturation factor rimP n=1 Tax=Candidat... 88 9e-17 UniRef50_C0W7C6 YhbC family protein n=1 Tax=Actinomyces urogenit... 88 9e-17 UniRef50_Q67P90 Ribosome maturation factor rimP n=2 Tax=Clostrid... 87 1e-16 UniRef50_B1I359 Ribosome maturation factor rimP n=4 Tax=Clostrid... 87 1e-16 UniRef50_C9LLP6 Putative uncharacterized protein n=1 Tax=Dialist... 87 2e-16 UniRef50_A5CEN4 Ribosome maturation factor rimP n=2 Tax=Orientia... 86 3e-16 UniRef50_D1VSB6 Putative uncharacterized protein n=1 Tax=Peptoni... 86 4e-16 UniRef50_D2LJ62 Putative uncharacterized protein n=1 Tax=Rhodomi... 86 5e-16 UniRef50_B2IIK0 Ribosome maturation factor rimP n=19 Tax=Alphapr... 85 6e-16 UniRef50_A6GNL5 Putative uncharacterized protein n=1 Tax=Limnoba... 85 6e-16 UniRef50_Q5HX28 Ribosome maturation factor rimP n=18 Tax=Campylo... 85 6e-16 UniRef50_C7I1W8 Putative uncharacterized protein n=1 Tax=Thiomon... 85 8e-16 UniRef50_A8IG16 Ribosome maturation factor rimP n=3 Tax=Rhizobia... 85 8e-16 UniRef50_C1SH19 Uncharacterized conserved protein n=1 Tax=Denitr... 85 9e-16 UniRef50_A5VCZ9 Ribosome maturation factor rimP n=8 Tax=Sphingom... 84 1e-15 UniRef50_Q11BD1 Ribosome maturation factor rimP n=6 Tax=Rhizobia... 84 1e-15 UniRef50_C5NYH1 Putative uncharacterized protein n=1 Tax=Gemella... 84 2e-15 UniRef50_Q07V75 Ribosome maturation factor rimP n=14 Tax=Bradyrh... 82 4e-15 UniRef50_Q7MQU0 Ribosome maturation factor rimP n=1 Tax=Wolinell... 82 4e-15 UniRef50_UPI0001C373AC hypothetical protein RflaF_02144 n=1 Tax=... 82 5e-15 UniRef50_A6WWW8 Ribosome maturation factor rimP n=37 Tax=Rhizobi... 82 6e-15 UniRef50_B2KC93 Ribosome maturation factor rimP n=1 Tax=Elusimic... 82 8e-15 UniRef50_D0XR54 Putative uncharacterized protein n=1 Tax=Brevund... 81 1e-14 UniRef50_Q2NC14 Ribosome maturation factor rimP n=2 Tax=Erythrob... 80 1e-14 UniRef50_Q1J5B0 Ribosome maturation factor rimP n=71 Tax=Strepto... 80 2e-14 UniRef50_A8ST27 Putative uncharacterized protein n=1 Tax=Coproco... 80 2e-14 UniRef50_C7HSS3 Putative uncharacterized protein n=1 Tax=Anaeroc... 80 2e-14 UniRef50_A8S8G3 Putative uncharacterized protein n=1 Tax=Faecali... 80 2e-14 UniRef50_B6BVK2 Putative uncharacterized protein n=1 Tax=beta pr... 80 3e-14 UniRef50_C9RKT2 Putative uncharacterized protein n=1 Tax=Fibroba... 79 4e-14 UniRef50_C5F193 Putative uncharacterized protein n=2 Tax=Helicob... 79 5e-14 UniRef50_B8DN15 Ribosome maturation factor rimP n=1 Tax=Desulfov... 79 6e-14 UniRef50_B0PH19 Putative uncharacterized protein n=1 Tax=Anaerot... 78 8e-14 UniRef50_A8SMZ9 Putative uncharacterized protein n=1 Tax=Parvimo... 78 9e-14 UniRef50_B1MZH7 Ribosome maturation factor rimP n=3 Tax=Leuconos... 78 1e-13 UniRef50_C5CEP0 Putative uncharacterized protein n=1 Tax=Kosmoto... 78 1e-13 UniRef50_B6FZB3 Putative uncharacterized protein n=1 Tax=Clostri... 78 1e-13 UniRef50_A8ZZ67 Ribosome maturation factor rimP n=1 Tax=Desulfoc... 77 1e-13 UniRef50_C3WCG0 Putative uncharacterized protein n=6 Tax=Fusobac... 77 1e-13 UniRef50_A1UU47 Ribosome maturation factor rimP n=5 Tax=Bartonel... 77 2e-13 UniRef50_B9L6E1 Ribosome maturation factor rimP n=1 Tax=Nautilia... 77 2e-13 UniRef50_D2Q1L3 Putative uncharacterized protein n=1 Tax=Kribbel... 76 3e-13 UniRef50_A7VT55 Putative uncharacterized protein n=1 Tax=Clostri... 76 3e-13 UniRef50_Q7NFN6 Ribosome maturation factor rimP n=1 Tax=Gloeobac... 76 3e-13 UniRef50_C6HXJ9 Putative uncharacterized protein n=1 Tax=Leptosp... 76 3e-13 UniRef50_C8W721 Putative uncharacterized protein n=3 Tax=Atopobi... 76 3e-13 UniRef50_C9M6Q7 Putative uncharacterized protein n=1 Tax=Jonquet... 75 5e-13 UniRef50_D0GIT1 Putative uncharacterized protein n=1 Tax=Leptotr... 75 6e-13 UniRef50_UPI0001699731 15 kDa protein n=1 Tax=Endoriftia perseph... 75 6e-13 UniRef50_D2MK27 Putative uncharacterized protein n=1 Tax=Candida... 75 6e-13 UniRef50_D1PLN8 Putative uncharacterized protein n=1 Tax=Subdoli... 74 1e-12 UniRef50_A9ITY3 Ribosome maturation factor rimP n=11 Tax=Burkhol... 74 2e-12 UniRef50_C0QHM0 Ribosome maturation factor rimP n=1 Tax=Desulfob... 74 2e-12 UniRef50_C7NAM7 Putative uncharacterized protein n=2 Tax=Fusobac... 74 2e-12 UniRef50_C1B310 Ribosome maturation factor rimP n=3 Tax=Nocardia... 73 2e-12 UniRef50_B1CB57 Putative uncharacterized protein n=1 Tax=Anaerof... 73 3e-12 UniRef50_C4XIM4 Putative uncharacterized protein n=2 Tax=Desulfo... 73 3e-12 UniRef50_C9MWU5 UPF0090 protein n=2 Tax=Fusobacteriaceae RepID=C... 72 4e-12 UniRef50_A4E6V0 Putative uncharacterized protein n=3 Tax=Collins... 72 6e-12 UniRef50_B9K861 Ribosome maturation factor rimP n=6 Tax=Thermoto... 72 6e-12 UniRef50_B6W939 Putative uncharacterized protein n=1 Tax=Anaeroc... 72 7e-12 UniRef50_A6Q228 Ribosome maturation factor rimP n=3 Tax=Epsilonp... 72 7e-12 UniRef50_C9KKC0 Putative uncharacterized protein n=2 Tax=Veillon... 72 7e-12 UniRef50_C3XJ54 Putative uncharacterized protein n=1 Tax=Helicob... 71 1e-11 UniRef50_A3ER83 Putative uncharacterized protein n=2 Tax=Leptosp... 71 1e-11 UniRef50_Q72KG3 Ribosome maturation factor rimP n=3 Tax=Thermace... 71 1e-11 UniRef50_C7H124 Putative uncharacterized protein n=1 Tax=Eubacte... 70 2e-11 UniRef50_B1VYN8 Ribosome maturation factor rimP n=13 Tax=Strepto... 70 2e-11 UniRef50_A5ZWL4 Putative uncharacterized protein n=1 Tax=Ruminoc... 70 2e-11 UniRef50_D2SDW9 Putative uncharacterized protein n=1 Tax=Geoderm... 70 2e-11 UniRef50_C8PIF5 Putative uncharacterized protein n=1 Tax=Campylo... 70 3e-11 UniRef50_C7H6A0 Protein associated with NUS operon n=2 Tax=Clost... 69 3e-11 UniRef50_C1F695 Ribosome maturation factor rimP n=1 Tax=Acidobac... 69 4e-11 UniRef50_B1XY65 Ribosome maturation factor rimP n=57 Tax=Burkhol... 69 4e-11 UniRef50_A7ZC71 Ribosome maturation factor rimP n=3 Tax=Campylob... 69 4e-11 UniRef50_UPI0001C31DB5 protein of unknown function DUF150 n=1 Ta... 69 4e-11 UniRef50_Q6MMS8 Ribosome maturation factor rimP n=1 Tax=Bdellovi... 69 5e-11 UniRef50_B6WX92 Putative uncharacterized protein n=1 Tax=Desulfo... 69 5e-11 UniRef50_A0LE22 Ribosome maturation factor rimP n=1 Tax=Magnetoc... 69 6e-11 UniRef50_A0LV30 Ribosome maturation factor rimP n=1 Tax=Acidothe... 68 8e-11 UniRef50_C6XFV9 Putative uncharacterized protein n=1 Tax=Candida... 68 1e-10 UniRef50_C0W0C2 Protein of hypothetical function DUF150 n=1 Tax=... 67 1e-10 UniRef50_Q1MQZ0 Ribosome maturation factor rimP n=1 Tax=Lawsonia... 67 2e-10 UniRef50_A8F3W0 Ribosome maturation factor rimP n=1 Tax=Thermoto... 67 2e-10 UniRef50_B1GZN4 Ribosome maturation factor rimP n=1 Tax=uncultur... 67 2e-10 UniRef50_Q1IZ05 Ribosome maturation factor rimP n=4 Tax=Deinococ... 66 3e-10 UniRef50_A7HL08 Ribosome maturation factor rimP n=1 Tax=Fervidob... 66 4e-10 UniRef50_A8YVR1 Ribosome maturation factor rimP n=20 Tax=Lactoba... 65 5e-10 UniRef50_A7BD83 Putative uncharacterized protein n=1 Tax=Actinom... 65 6e-10 UniRef50_Q9ZM44 Ribosome maturation factor rimP n=14 Tax=Helicob... 65 8e-10 UniRef50_A1SLL0 Ribosome maturation factor rimP n=2 Tax=Actinomy... 65 1e-09 UniRef50_C3XMY5 Putative uncharacterized protein n=1 Tax=Helicob... 64 1e-09 UniRef50_P59821 Ribosome maturation factor rimP n=2 Tax=Helicoba... 64 1e-09 UniRef50_A4X4N4 Ribosome maturation factor rimP n=3 Tax=Actinomy... 64 1e-09 UniRef50_C1XJ52 Uncharacterized conserved protein n=1 Tax=Meioth... 64 1e-09 UniRef50_C7RGN7 Putative uncharacterized protein n=3 Tax=Anaeroc... 64 2e-09 UniRef50_A1ZEG3 15 kDa protein n=3 Tax=Sphingobacteriales RepID=... 64 2e-09 UniRef50_A6LMV9 Ribosome maturation factor rimP n=1 Tax=Thermosi... 64 2e-09 UniRef50_A3HY55 Putative uncharacterized protein n=1 Tax=Algorip... 63 2e-09 UniRef50_C9Z253 Putative uncharacterized protein n=4 Tax=Strepto... 63 2e-09 UniRef50_A4FM36 Ribosome maturation factor rimP n=4 Tax=Actinomy... 63 2e-09 UniRef50_A0RQZ2 Ribosome maturation factor rimP n=2 Tax=Epsilonp... 63 3e-09 UniRef50_C5BWS6 Ribosome maturation factor rimP n=1 Tax=Beutenbe... 62 4e-09 UniRef50_Q0AYJ1 Ribosome maturation factor rimP n=1 Tax=Syntroph... 62 4e-09 UniRef50_Q30SS4 Ribosome maturation factor rimP n=2 Tax=Campylob... 62 6e-09 UniRef50_Q2S1N5 Ribosome maturation factor rimP n=1 Tax=Saliniba... 62 8e-09 UniRef50_D1VB72 Putative uncharacterized protein n=1 Tax=Frankia... 61 9e-09 UniRef50_D0MI89 Putative uncharacterized protein n=1 Tax=Rhodoth... 61 1e-08 UniRef50_C0ZYA2 Ribosome maturation factor rimP n=2 Tax=Rhodococ... 61 1e-08 UniRef50_B0VFB7 Putative uncharacterized protein n=1 Tax=Candida... 60 1e-08 UniRef50_C2FW05 Protein of hypothetical function DUF150 n=2 Tax=... 60 2e-08 UniRef50_C3RL59 Putative uncharacterized protein n=4 Tax=Bacteri... 60 2e-08 UniRef50_B7IDT7 Ribosome maturation factor rimP n=1 Tax=Thermosi... 60 3e-08 UniRef50_UPI0001BCD1F0 hypothetical protein AmarD1_13863 n=1 Tax... 60 3e-08 UniRef50_C6VUJ7 Putative uncharacterized protein n=1 Tax=Dyadoba... 60 3e-08 UniRef50_C1A8N5 Ribosome maturation factor rimP n=1 Tax=Gemmatim... 59 4e-08 UniRef50_C5RBB8 Putative uncharacterized protein n=1 Tax=Weissel... 59 4e-08 UniRef50_A8R7M6 Putative uncharacterized protein n=1 Tax=Eubacte... 59 5e-08 UniRef50_Q0EZ70 Putative uncharacterized protein n=1 Tax=Maripro... 59 5e-08 UniRef50_B0S1E8 Ribosome maturation factor rimP n=2 Tax=Finegold... 59 5e-08 UniRef50_Q1AW57 Ribosome maturation factor rimP n=1 Tax=Rubrobac... 59 6e-08 UniRef50_C1RGC3 Uncharacterized conserved protein n=1 Tax=Cellul... 58 8e-08 UniRef50_B3QUN0 Ribosome maturation factor rimP n=1 Tax=Chlorohe... 58 9e-08 UniRef50_C4DMD6 Uncharacterized conserved protein n=4 Tax=Actino... 57 1e-07 UniRef50_D2QL24 Putative uncharacterized protein n=1 Tax=Spiroso... 57 2e-07 UniRef50_Q04GN4 Ribosome maturation factor rimP n=2 Tax=Oenococc... 57 2e-07 UniRef50_C9PWZ4 Putative uncharacterized protein n=8 Tax=Prevote... 57 2e-07 UniRef50_A9BH33 Ribosome maturation factor rimP n=1 Tax=Petrotog... 56 3e-07 UniRef50_C8PR25 Putative uncharacterized protein n=1 Tax=Trepone... 56 3e-07 UniRef50_B7CAI1 Putative uncharacterized protein n=1 Tax=Eubacte... 55 5e-07 UniRef50_D1B5D8 Putative uncharacterized protein n=1 Tax=Therman... 55 5e-07 UniRef50_B1MD92 Ribosome maturation factor rimP n=4 Tax=Mycobact... 55 6e-07 UniRef50_B8J1Y7 Ribosome maturation factor rimP n=1 Tax=Desulfov... 55 7e-07 UniRef50_C7NH15 Uncharacterized conserved protein n=1 Tax=Kytoco... 55 8e-07 UniRef50_A6GK80 Putative uncharacterized protein n=1 Tax=Plesioc... 55 9e-07 UniRef50_B2GKR8 Ribosome maturation factor rimP n=1 Tax=Kocuria ... 55 9e-07 UniRef50_Q73NP4 Ribosome maturation factor rimP n=1 Tax=Treponem... 54 1e-06 UniRef50_A3PY72 Ribosome maturation factor rimP n=18 Tax=Mycobac... 54 2e-06 UniRef50_A8L6F1 Ribosome maturation factor rimP n=2 Tax=Frankia ... 54 2e-06 UniRef50_Q11PK7 Ribosome maturation factor rimP n=1 Tax=Cytophag... 54 2e-06 UniRef50_D1C050 Putative uncharacterized protein n=1 Tax=Xylanim... 53 3e-06 UniRef50_C7QDY6 Putative uncharacterized protein n=1 Tax=Catenul... 52 5e-06 UniRef50_B3QQI4 Ribosome maturation factor rimP n=2 Tax=Chloroba... 52 5e-06 UniRef50_UPI0001C338FD hypothetical protein UCYN_07210 n=1 Tax=c... 52 5e-06 UniRef50_C7M5A8 Putative uncharacterized protein n=2 Tax=Capnocy... 52 7e-06 UniRef50_A1BDE9 Ribosome maturation factor rimP n=1 Tax=Chlorobi... 52 8e-06 UniRef50_A3TRX7 Putative uncharacterized protein n=1 Tax=Janibac... 51 1e-05 UniRef50_Q6A7M3 Ribosome maturation factor rimP n=2 Tax=Propioni... 51 1e-05 UniRef50_B1X3N5 Putative uncharacterized protein n=1 Tax=Pauline... 51 1e-05 >UniRef50_A4WEY5 Ribosome maturation factor rimP n=181 Tax=Proteobacteria RepID=RIMP_ENT38 Length = 160 Score = 288 bits (737), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 138/150 (92%), Positives = 144/150 (96%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSA 60 +STLEQKLTEMI APVEALG+ELVGIEFIR RTSTLRIYIDSEDGINVDDCADVSHQVSA Sbjct: 11 LSTLEQKLTEMIKAPVEALGYELVGIEFIRSRTSTLRIYIDSEDGINVDDCADVSHQVSA 70 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 VLDVEDPITVAYNLEVSSPGL RP+FTAEHY ++GEEV +VLRMAVQNRRKWQGVIKAV Sbjct: 71 VLDVEDPITVAYNLEVSSPGLHRPMFTAEHYTHYIGEEVAVVLRMAVQNRRKWQGVIKAV 130 Query: 121 DGEMITVTVEGKDEVFALSNIQKANLVPHF 150 DGEMITVTVEGKDEVFALSNIQKANLVPHF Sbjct: 131 DGEMITVTVEGKDEVFALSNIQKANLVPHF 160 >UniRef50_A1ST43 Ribosome maturation factor rimP n=90 Tax=Gammaproteobacteria RepID=RIMP_PSYIN Length = 153 Score = 207 bits (526), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 95/151 (62%), Positives = 125/151 (82%), Gaps = 1/151 (0%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVS 59 M++LE++LTEM+ VE LG+ELVG+E+IR G+ STLR+YID ++GI VDDCA VS QVS Sbjct: 1 MASLEERLTEMLAPSVEDLGYELVGVEYIRAGKHSTLRVYIDQDEGILVDDCAAVSRQVS 60 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 A++DVEDPIT Y+LEVSSPG++RPLF AEHY F GEEV + LRM +QNRR+W+GVI + Sbjct: 61 AIMDVEDPITNEYSLEVSSPGMNRPLFKAEHYQIFAGEEVKIQLRMPIQNRRRWKGVIVS 120 Query: 120 VDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 + E+I + +EG++E F+LSNIQKAN+VP F Sbjct: 121 AEDEIICLNIEGREERFSLSNIQKANIVPKF 151 >UniRef50_Q15V74 Ribosome maturation factor rimP n=8 Tax=Gammaproteobacteria RepID=RIMP_PSEA6 Length = 152 Score = 192 bits (489), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 95/152 (62%), Positives = 121/152 (79%), Gaps = 3/152 (1%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVS 59 MS LEQKLTEM+TAPVEALGFE+VGIEF+R G+ ST+R+YID DGI+VD CA+VSHQVS Sbjct: 1 MSQLEQKLTEMLTAPVEALGFEMVGIEFVRAGKHSTMRVYIDHPDGISVDHCAEVSHQVS 60 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQG-VIK 118 AVLDVEDPI YNLEVSSPG++RPLF +HY VGE VTL L+M + +RR ++G ++ Sbjct: 61 AVLDVEDPINTEYNLEVSSPGMERPLFKLQHYIESVGEVVTLRLKMPMGDRRNFKGKLLS 120 Query: 119 AVDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 DG M+T+ V+ ++ V A +NI+K N+VP F Sbjct: 121 EADG-MLTIEVDNQEFVLAFANIEKGNVVPTF 151 >UniRef50_B0TQA4 Ribosome maturation factor rimP n=34 Tax=Gammaproteobacteria RepID=RIMP_SHEHH Length = 151 Score = 173 bits (438), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 83/151 (54%), Positives = 112/151 (74%), Gaps = 1/151 (0%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVS 59 M+TLE+KL EM+ APVEALG +L G+E+I+ G+ S LR+YID+E GI ++DCA+ S QVS Sbjct: 1 MATLERKLVEMLKAPVEALGHQLWGLEYIQAGKHSILRLYIDNEKGIFIEDCAEASRQVS 60 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 AVLDVEDPIT Y LEVSSPG++R LFTAE Y ++GE V + L M V R +G + Sbjct: 61 AVLDVEDPITSEYTLEVSSPGVERLLFTAEQYKAYIGETVKVQLTMPVAGSRNLKGTVTG 120 Query: 120 VDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 VDG+M+ ++V+G + + AL NI+K NL+ F Sbjct: 121 VDGQMLNLSVDGNELIVALDNIRKGNLIAKF 151 >UniRef50_A6VU27 Ribosome maturation factor rimP n=18 Tax=Gammaproteobacteria RepID=RIMP_MARMS Length = 153 Score = 145 bits (367), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 76/153 (49%), Positives = 103/153 (67%), Gaps = 3/153 (1%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYI--DSEDGINVDDCADVSHQ 57 MS L E+I VE LGFE G+E++ G+ S LRIYI D+E GI+V+DCA VS Q Sbjct: 1 MSAKYTILEELIRPVVEGLGFEFWGMEYLSLGKDSVLRIYIETDAEKGIDVEDCARVSRQ 60 Query: 58 VSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI 117 VS++LDVEDPIT YNLEVSSPGLDRPLF+ Y ++G V+L LR+ RRK++G + Sbjct: 61 VSSILDVEDPITGEYNLEVSSPGLDRPLFSLAQYQAYIGSIVSLRLRVPFDGRRKFKGQL 120 Query: 118 KAVDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 ++ E I + V+ ++ + + I KAN+VP F Sbjct: 121 MGIESEDIVIRVDQEEYLLPIDLIDKANVVPQF 153 >UniRef50_A9N8V8 Ribosome maturation factor rimP n=6 Tax=Coxiella burnetii RepID=RIMP_COXBR Length = 153 Score = 145 bits (365), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 73/145 (50%), Positives = 101/145 (69%), Gaps = 2/145 (1%) Query: 8 LTEMITAPVEALGFELVGIE-FIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVED 66 L +I VEALGFELVG E F RG T+ L++++D GI +D+CA VS Q+SAVLDVED Sbjct: 7 LHRLIAPAVEALGFELVGCELFRRGATTILQVFVDKPGGIGLDECAKVSRQISAVLDVED 66 Query: 67 PITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG-EMI 125 PI Y LEVSSPGL+RPL+TA HY RF+G + + LR + +R+++G++ AVD E + Sbjct: 67 PIRGRYTLEVSSPGLERPLYTANHYRRFIGNKAKIRLREPREGQRQFRGMVVAVDNEEQV 126 Query: 126 TVTVEGKDEVFALSNIQKANLVPHF 150 T+ ++ K +L I+KANL+ F Sbjct: 127 TLQLDNKILKVSLGEIEKANLIADF 151 >UniRef50_Q3J9B4 Ribosome maturation factor rimP n=4 Tax=Gammaproteobacteria RepID=RIMP_NITOC Length = 151 Score = 143 bits (360), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 65/147 (44%), Positives = 102/147 (69%), Gaps = 2/147 (1%) Query: 5 EQKLTEMITAPVEALGFELVGIEFIR--GRTSTLRIYIDSEDGINVDDCADVSHQVSAVL 62 +++++E++ V ALG+ELVG+E + G+ + LRIYID+ GI +DDC SHQ+SA+L Sbjct: 4 DRRISELVEPVVAALGYELVGVERLSSVGKGALLRIYIDTPSGITIDDCERASHQISALL 63 Query: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 DVE+ + AY LE+SSPGL+RPLFT EH+ RF G E ++ L + RR+++G+++ + G Sbjct: 64 DVEELMASAYTLEISSPGLNRPLFTEEHFKRFTGVEASITLSKPLNGRREFKGLLRGIRG 123 Query: 123 EMITVTVEGKDEVFALSNIQKANLVPH 149 + + + V G++ L I+KA LVP Sbjct: 124 DRVVILVAGEEFELPLEGIKKARLVPE 150 >UniRef50_Q31GK7 Ribosome maturation factor rimP n=2 Tax=Gammaproteobacteria RepID=RIMP_THICR Length = 151 Score = 139 bits (349), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 71/150 (47%), Positives = 98/150 (65%), Gaps = 2/150 (1%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFI-RGRTSTLRIYIDSED-GINVDDCADVSHQVSA 60 TLE K+ ++ +E +GF+ G E++ G+ STLRIYID ++ G+ VDDC VS QVSA Sbjct: 2 TLEDKIENLLRPTIETMGFQFWGCEYLPAGKHSTLRIYIDKDEVGVTVDDCGKVSRQVSA 61 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 ++DVEDPI+ AY LEVSSPG+DRPLF E Y + G+EV + V R++++GV+ V Sbjct: 62 IMDVEDPISNAYMLEVSSPGMDRPLFHPEQYKAYEGQEVQVRTSSPVMGRKRFKGVMSQV 121 Query: 121 DGEMITVTVEGKDEVFALSNIQKANLVPHF 150 I V V+G+ S I KAN+VP F Sbjct: 122 SESDIAVEVDGELYEIPFSLIDKANVVPQF 151 >UniRef50_B1J268 Ribosome maturation factor rimP n=21 Tax=Gammaproteobacteria RepID=RIMP_PSEPW Length = 169 Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 72/150 (48%), Positives = 102/150 (68%), Gaps = 2/150 (1%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFI-RGRTSTLRIYIDSEDGINVDDCADVSHQVSA 60 S LEQ L ++ VE LG++ GIE++ +G+ S LRIYID E GI V+DC VS Q SA Sbjct: 20 SKLEQ-LQALLAPVVEGLGYQCWGIEYVSQGKHSVLRIYIDKEGGILVEDCEAVSRQASA 78 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 +LDVEDPI+ Y LEVSSPG+DRPLFT E +A GE+V + LR + RR +QG+++ V Sbjct: 79 ILDVEDPISSEYTLEVSSPGMDRPLFTLEQFASHAGEQVKIKLRTPFEGRRNFQGLLRGV 138 Query: 121 DGEMITVTVEGKDEVFALSNIQKANLVPHF 150 + + + V V+ + + + +I KAN++P F Sbjct: 139 EEQDVVVQVDSHEFLLPIDSIDKANIIPSF 168 >UniRef50_B5JRQ8 Putative uncharacterized protein n=2 Tax=Gammaproteobacteria RepID=B5JRQ8_9GAMM Length = 159 Score = 136 bits (342), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 66/151 (43%), Positives = 97/151 (64%), Gaps = 1/151 (0%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEF-IRGRTSTLRIYIDSEDGINVDDCADVSHQVS 59 M +K +I V+ LG+ELVG++F + L +YID ++G+N+DDCA +S +VS Sbjct: 1 MQHKARKEWSLIEPVVQDLGYELVGVDFRANASPAVLCVYIDRDEGVNIDDCAKISREVS 60 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 AVLDVEDPIT AYNLEVSSPGLDRPLF + ++ G + L + + RR ++G + Sbjct: 61 AVLDVEDPITSAYNLEVSSPGLDRPLFRESDFVKYKGHLAKVKLSIPYEERRNFKGQLNG 120 Query: 120 VDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 V+ M+ + V+ ++ + I+KANLVP F Sbjct: 121 VEDGMVLLIVDNEEYLLPYEQIEKANLVPQF 151 >UniRef50_D0L0S8 Putative uncharacterized protein n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L0S8_HALNC Length = 166 Score = 135 bits (340), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 66/152 (43%), Positives = 98/152 (64%), Gaps = 2/152 (1%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSA 60 M + + + ++ VEA G VG EF G LR+YID+E G+ +DDC VS +S Sbjct: 1 MQKIPESIEALLQPVVEAAGCAWVGGEFRGGPDGLLRVYIDTEAGVTLDDCTKVSDALSG 60 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 VLDVEDP Y LEVSSPG++RP+F A +A F+G++V + L + RR+++G++ AV Sbjct: 61 VLDVEDPFPGFYRLEVSSPGVERPMFRASDFALFIGQKVHVRLHRPLAQRRRFEGIVSAV 120 Query: 121 DGEMITVTVEGKDEVFA--LSNIQKANLVPHF 150 DGE I++++EG +VF S +++ANLV F Sbjct: 121 DGEQISLSIEGDQDVFTFPFSEVERANLVFEF 152 >UniRef50_C8X0H0 Putative uncharacterized protein n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X0H0_DESRD Length = 157 Score = 134 bits (338), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 59/144 (40%), Positives = 94/144 (65%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLD 63 L ++L+E+I + G ++ G+E R LR+Y+DS +G+++D CA +S +S LD Sbjct: 5 LYERLSELIKPLAASCGLDVWGMEIPASRGGVLRVYVDSPNGVSIDQCATLSRHISVTLD 64 Query: 64 VEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGE 123 VEDP+ Y LEVSSPGL+RP FT ++G+ V L L+ +Q R+KW+GV+ +G+ Sbjct: 65 VEDPLPGPYTLEVSSPGLERPFFTVSQLPPYIGQPVALKLQAPMQGRKKWRGVLIEAEGD 124 Query: 124 MITVTVEGKDEVFALSNIQKANLV 147 +T+ V+G + VFA +++KA LV Sbjct: 125 HLTLDVDGVEHVFAWEDVEKARLV 148 >UniRef50_A1WXV3 Ribosome maturation factor rimP n=3 Tax=Gammaproteobacteria RepID=RIMP_HALHL Length = 151 Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 69/143 (48%), Positives = 92/143 (64%), Gaps = 2/143 (1%) Query: 6 QKLTEMITAPVEALGFELVGIEFIRGRTS-TLRIYIDSEDGINVDDCADVSHQVSAVLDV 64 Q L ++ V LG+ELVG+E + + TLR+YID+ GI ++DC VSHQVS +LDV Sbjct: 5 QTLHSLLEPTVTGLGYELVGVELTGAKGNRTLRVYIDTPAGIRLEDCEAVSHQVSGLLDV 64 Query: 65 EDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEM 124 EDPI AYNLEVSSPGLDRP+F + Y RF GE + L L + RR+ +GV+ +DGE Sbjct: 65 EDPIEGAYNLEVSSPGLDRPIFKSADYDRFSGERIKLRLLELYEGRRRVKGVLLGLDGEF 124 Query: 125 ITVT-VEGKDEVFALSNIQKANL 146 + V V+G + L I +A L Sbjct: 125 VRVRDVDGVELRIPLELIDRARL 147 >UniRef50_Q5WT34 Ribosome maturation factor rimP n=5 Tax=Legionella RepID=RIMP_LEGPL Length = 147 Score = 129 bits (324), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 62/132 (46%), Positives = 89/132 (67%), Gaps = 1/132 (0%) Query: 16 VEALGFELVGIEFI-RGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPITVAYNL 74 ++ +G+EL G E++ +G+ S LRIYID DGI +DDC +VS QVSA+LDVEDPI Y+L Sbjct: 14 IKNMGYELWGCEYLSQGKHSLLRIYIDKPDGIGIDDCQEVSKQVSAMLDVEDPIPGHYSL 73 Query: 75 EVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTVEGKDE 134 E+SSPG+ RPLF+ Y R++G E+ + V +RK G+I + G+ I + + + + Sbjct: 74 EISSPGIPRPLFSIWQYQRYLGYEIHVKTFKPVNGKRKLSGIIVSASGDTIVLDINNEHQ 133 Query: 135 VFALSNIQKANL 146 LSNI KANL Sbjct: 134 EILLSNIVKANL 145 >UniRef50_A4BTQ0 Putative uncharacterized protein n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BTQ0_9GAMM Length = 150 Score = 129 bits (324), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 65/140 (46%), Positives = 94/140 (67%), Gaps = 1/140 (0%) Query: 8 LTEMITAPVEALGFELVGIEFIRGRT-STLRIYIDSEDGINVDDCADVSHQVSAVLDVED 66 LT+++ V A+G+ELVGIE+ ++ + LRIYID DGI+V+DCA VS+Q+S VLDVED Sbjct: 7 LTKVVEPVVAAMGYELVGIEYRPSKSQALLRIYIDKADGISVEDCALVSNQISGVLDVED 66 Query: 67 PITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMIT 126 P++ Y LEVSSPGL RP+F A Y RF GE V + +R + RR+ G+++ + + + Sbjct: 67 PLSGRYTLEVSSPGLRRPIFKASDYERFAGELVHIRIRGTLDGRRRIHGLLRGLRADCVI 126 Query: 127 VTVEGKDEVFALSNIQKANL 146 V G + L+ + KANL Sbjct: 127 VVENGIEISVPLNRVDKANL 146 >UniRef50_A8PNL6 15 kDa protein n=1 Tax=Rickettsiella grylli RepID=A8PNL6_9COXI Length = 153 Score = 128 bits (322), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 62/138 (44%), Positives = 92/138 (66%), Gaps = 1/138 (0%) Query: 12 ITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPITV 70 ++ +EALG+EL ++R G+ + LRIYIDSE GI + DC VS QV A+LDVED + Sbjct: 12 LSPTIEALGYELWACVYLREGQKNRLRIYIDSEKGITLSDCERVSRQVGALLDVEDLLQG 71 Query: 71 AYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTVE 130 Y+LEVSSPGLDRPL +H+ R+VG + + L+ + N+RK++G++++ I + E Sbjct: 72 HYHLEVSSPGLDRPLIKEDHFQRYVGYPIHVFLQSPIDNQRKFKGLLQSTRASGIVLNRE 131 Query: 131 GKDEVFALSNIQKANLVP 148 GK+ V NI AN++P Sbjct: 132 GKEFVLTWDNILHANVLP 149 >UniRef50_Q0A795 Ribosome maturation factor rimP n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=RIMP_ALHEH Length = 152 Score = 128 bits (322), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 2/149 (1%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFI-RGRTSTLRIYIDSEDGINVDDCADVSHQVS 59 M+ E L +I + +G+ELVGIE+ LRIYIDS DGI +DDC S Q+S Sbjct: 1 MAATEDTLYALIDPLLTGMGYELVGIEYGGPAGKRLLRIYIDSPDGITLDDCETCSRQIS 60 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 AVLDVEDPI Y LE+SSPGLDRP+F A Y RF GE++ + L + RR+++GV+ Sbjct: 61 AVLDVEDPIPGEYTLEISSPGLDRPIFKASDYDRFAGEQIKIRLSAPWEGRRRFKGVLAG 120 Query: 120 VDGEMITVTVEGKDEV-FALSNIQKANLV 147 + E + V DEV L I+KA L+ Sbjct: 121 LGDEGVRVVEAQGDEVQIPLDLIEKARLI 149 >UniRef50_B8GP00 Ribosome maturation factor rimP n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=RIMP_THISH Length = 154 Score = 128 bits (322), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 62/141 (43%), Positives = 94/141 (66%), Gaps = 1/141 (0%) Query: 7 KLTEMITAPVEALGFELVGIEF-IRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVE 65 +L ++ V +G++L G+EF + ++ LR++IDSE GI +DDC +VS QVSA++DVE Sbjct: 2 QLKALLEPLVTRMGYQLWGMEFRVAKHSALLRLFIDSEQGITLDDCTEVSRQVSALMDVE 61 Query: 66 DPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMI 125 DPI V Y LEVSSPG+DRPLF A YAR+VGE+V + + + +R + G I + D + + Sbjct: 62 DPIQVPYTLEVSSPGVDRPLFEAGQYARYVGEQVRVRTQWPIDGQRNFAGAIVSADEDSV 121 Query: 126 TVTVEGKDEVFALSNIQKANL 146 T+ V+G++ L I + L Sbjct: 122 TLDVDGREVRLPLEAIARGRL 142 >UniRef50_Q30WJ2 Ribosome maturation factor rimP n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=RIMP_DESDG Length = 173 Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 65/161 (40%), Positives = 97/161 (60%), Gaps = 11/161 (6%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSA 60 ++T+ ++L E+IT + + EL G++FI+G + LRIYID DG+ +D CA VS + Sbjct: 5 VTTIHEQLLEIITPVIRSFDLELWGMDFIQGGKAVLRIYIDGPDGVTIDQCATVSRHIGL 64 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQ---NRRKWQGVI 117 L+VED I AYNLEVSSPGL+RPLF+A A + G + LVLR R+K+ GV+ Sbjct: 65 ALEVEDIIAGAYNLEVSSPGLERPLFSAAQLAAYKGHKAELVLRAPCAQFPGRKKFTGVV 124 Query: 118 KAVDGEMITVTVE---GKDEV-----FALSNIQKANLVPHF 150 V+GE T+ ++ G D + +++KA L+ F Sbjct: 125 GNVEGENFTLQIDPLKGGDNLQEELSAHWDDVKKARLIYDF 165 >UniRef50_A1AV97 Ribosome maturation factor rimP n=3 Tax=Bacteria RepID=RIMP_RUTMC Length = 154 Score = 119 bits (298), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 64/154 (41%), Positives = 99/154 (64%), Gaps = 4/154 (2%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFI-RGRTSTLRIYIDSED-GINVDDCADVSHQV 58 M+ + K+T +I ++ + +ELVGIE++ G+ S LR++ID++ G+ V+DC VS Q+ Sbjct: 1 MARVTDKITHLIELVIKDMCYELVGIEYVASGKHSILRVFIDTDKKGVGVNDCEKVSRQL 60 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 S++ DVE+PI+ Y LEVSSPG++RPLF EHY RF+G V L + + RR + GVI Sbjct: 61 SSIFDVEEPISGQYTLEVSSPGIERPLFHKEHYQRFLGANVKLRMVRPIDGRRNFFGVIG 120 Query: 119 AVDGEMITVTVEGKDE--VFALSNIQKANLVPHF 150 V+ T + G+ + + + I+KANLV F Sbjct: 121 CVNEADNTFELVGELDLVILDIDLIEKANLVVDF 154 >UniRef50_Q6FF42 Ribosome maturation factor rimP n=21 Tax=Moraxellaceae RepID=RIMP_ACIAD Length = 174 Score = 118 bits (295), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 76/170 (44%), Positives = 98/170 (57%), Gaps = 24/170 (14%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFI-RGRTSTLRIYID-----------SEDG--- 45 +S Q L ++I V+A L GIEFI +G+ S LRI+ID +EDG Sbjct: 3 LSNKTQALHDLIAPAVQACDVNLWGIEFIPQGKRSLLRIFIDKPVDETAEPVLNEDGETE 62 Query: 46 ----INVDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTL 101 I V DC V+ QV A+LDV DPI+ Y LEVSSPG DRP F E + ++G++V L Sbjct: 63 LGRGIGVQDCVRVTQQVGAILDVHDPISGEYALEVSSPGWDRPFFQLEQMSAYIGQQVAL 122 Query: 102 VLRMAVQNRRKWQGVIKAVD--GEMITVTVEGKDEVFALS--NIQKANLV 147 L AV+NRRK+Q + VD EMI V V+GK V + NI KANL+ Sbjct: 123 RLISAVENRRKFQAKLLLVDLENEMIQVEVDGK-HVLEIDSHNIDKANLI 171 >UniRef50_A1B584 Ribosome maturation factor rimP n=28 Tax=Bacteria RepID=RIMP_PARDP Length = 206 Score = 117 bits (294), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 66/145 (45%), Positives = 93/145 (64%), Gaps = 9/145 (6%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDS-EDGINVDDCADVSHQVSA 60 + ++++L E+I+ +E LGFELV I G+T+TL+I D E GINVDDCAD+S VSA Sbjct: 8 TAIDRRLAEIISPVIEDLGFELVRIRLQGGKTATLQIMADRPEGGINVDDCADISTAVSA 67 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 +LDVEDP+ AY+LEVSSPG+DRPL + + F G E L + R++++GV+ V Sbjct: 68 ILDVEDPLEDAYHLEVSSPGIDRPLTRLKDFETFEGYEARLETNQPIDGRKRFKGVLAGV 127 Query: 121 DGEMITVTVEGKDEVFALSNIQKAN 145 + EG DEV L NI++ Sbjct: 128 E------KGEGGDEV--LLNIEEGG 144 >UniRef50_C8NBH5 BCR/YhbC family protein n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NBH5_9GAMM Length = 157 Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 66/154 (42%), Positives = 96/154 (62%), Gaps = 8/154 (5%) Query: 5 EQKLTEMITAPVEALGFELVGIEFIRGRTST-LRIYID-SEDGINVDDCADVSHQVSAVL 62 E+++TE++ VE++GFE VG+E+ + LRIY+D E GI+++ +V+ V+ +L Sbjct: 4 EERVTELLKPVVESMGFEWVGVEYHHNSVNAILRIYVDRPEGGIDMEGVVEVTEAVNPIL 63 Query: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD- 121 DVEDPI Y LEVSSPGLDRPLF+ + RF GE + L V RR+++GVI++ D Sbjct: 64 DVEDPINAPYTLEVSSPGLDRPLFSFADFVRFTGETAKVHLHAPVGKRRRFEGVIESTDE 123 Query: 122 -GEMITVTVEGKDEVFAL----SNIQKANLVPHF 150 + IT V V A+ +N+ KA LVP F Sbjct: 124 TAQRITFAVRQGRAVEAVEVDYANVDKARLVPVF 157 >UniRef50_A5EWZ1 Ribosome maturation factor rimP n=1 Tax=Dichelobacter nodosus VCS1703A RepID=RIMP_DICNV Length = 155 Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 65/152 (42%), Positives = 94/152 (61%), Gaps = 6/152 (3%) Query: 5 EQKLTEMITAPVEALGFELVGIEF-IRGRTSTLRIYIDS-EDGINVDDCADVSHQVSAVL 62 EQ +TE++ VE++GF G+E+ S LRIY+D+ E GI +DD ++ Q++ +L Sbjct: 4 EQVVTELLRPIVESMGFIWWGLEYHYNSMNSILRIYVDTQEGGIGIDDIVTITEQLNPIL 63 Query: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 DVE PIT Y LEVSSPGLDR LFT +F+G V LR + +RK+QG++ AVD Sbjct: 64 DVEQPITTNYTLEVSSPGLDRILFTLAQCEQFIGATVHCRLRFPFEGKRKFQGIMTAVDH 123 Query: 123 EMITVTV---EGKDEV-FALSNIQKANLVPHF 150 + T+++ +G EV + I KA +VP F Sbjct: 124 DKETISLTLADGAAEVHLPFTQIDKARIVPQF 155 >UniRef50_B9ZLN5 Putative uncharacterized protein n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZLN5_9GAMM Length = 151 Score = 114 bits (285), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 61/148 (41%), Positives = 86/148 (58%), Gaps = 1/148 (0%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRG-RTSTLRIYIDSEDGINVDDCADVSHQVS 59 M+ ++L ++ VE GF G+E+ G + LRIYIDS +G+ VDDCA VS Q Sbjct: 1 MAEKPEQLKTLLAPVVEGQGFVFWGLEYHPGSKPVMLRIYIDSPEGVTVDDCALVSEQAG 60 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 AVL+VE + Y LEVSSPG++RPLFT + Y ++G V + L RR ++G + Sbjct: 61 AVLEVEQALRGNYTLEVSSPGIERPLFTPDQYRGYIGHPVKVRLSWPEHGRRNYRGTLIG 120 Query: 120 VDGEMITVTVEGKDEVFALSNIQKANLV 147 VD EMI V V+G L+ I A ++ Sbjct: 121 VDEEMIEVEVDGTGYELPLNAIHNARVL 148 >UniRef50_D1U698 Putative uncharacterized protein n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U698_9DELT Length = 156 Score = 112 bits (280), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 66/153 (43%), Positives = 89/153 (58%), Gaps = 5/153 (3%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEF-IRGRTSTLRIYIDSEDGINVDDCADVSHQVSAV 61 T E L ++I VE LG L G+ +G +RIYID DG+ +D CA VS QVS + Sbjct: 4 TFEDTLADIIRPEVEGLGCTLWGLASPSKGERRIIRIYIDGPDGVTIDQCAKVSRQVSLL 63 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 L+VED I AY LEVSSPGLDR F+ A FVG++VT +L A RRK GV+K++ Sbjct: 64 LEVEDTIPGAYILEVSSPGLDRRFFSTAQMADFVGKQVTALLYEARDGRRKVTGVLKSIG 123 Query: 122 G----EMITVTVEGKDEVFALSNIQKANLVPHF 150 E T+ G+D A +++++ LV F Sbjct: 124 ADAGQESFTLDEGGQDVTLAWNDLKEVRLVHEF 156 >UniRef50_Q1GCH5 Ribosome maturation factor rimP n=5 Tax=Rhodobacterales RepID=RIMP_SILST Length = 203 Score = 112 bits (280), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 57/130 (43%), Positives = 85/130 (65%), Gaps = 1/130 (0%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSA 60 + ++++L E+IT +E LG+ELV I + G+T+TL+I D DG I VDDCA +S+ VSA Sbjct: 9 AAIDRRLAEIITPVIEDLGYELVRIRLMSGKTTTLQIMADRPDGGIEVDDCAAISNAVSA 68 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 LDVEDPI AY LEVSSPG+DRPL + + F G E L + RR+++G + + Sbjct: 69 TLDVEDPILDAYTLEVSSPGIDRPLTRLKDFDMFEGYEAKLETADLIDGRRRFKGELAGI 128 Query: 121 DGEMITVTVE 130 + + + + +E Sbjct: 129 EDDEVLINIE 138 >UniRef50_B9E1J8 Ribosome maturation factor rimP n=15 Tax=Clostridium RepID=RIMP_CLOK1 Length = 154 Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 59/145 (40%), Positives = 93/145 (64%), Gaps = 2/145 (1%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDG-INVDDCADVSHQVSAV 61 L +++ ++I V+ L FEL +EF R G + LRI+ID E+G I+++DC VS VS + Sbjct: 6 LVERVLKLIKPIVDNLNFELYHLEFKREGNNNYLRIFIDKEEGNISLEDCEAVSRAVSDI 65 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 LD EDPI Y LEVSSPG++R L+T EH R++G V + ++ ++ ++K+QG + + D Sbjct: 66 LDREDPIRDPYYLEVSSPGIERTLYTHEHLKRYIGFNVIVNIQGLLKGKKKYQGKLLSFD 125 Query: 122 GEMITVTVEGKDEVFALSNIQKANL 146 ++ V+ EG++ V S I NL Sbjct: 126 ESVLRVSCEGEEIVIPKSKISTVNL 150 >UniRef50_C9R8Y0 Putative uncharacterized protein n=1 Tax=Ammonifex degensii KC4 RepID=C9R8Y0_AMMDK Length = 161 Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 58/132 (43%), Positives = 81/132 (61%), Gaps = 1/132 (0%) Query: 17 EALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPITVAYNLE 75 E LG ELV +E+ + G LR++ID G+ +DDC +S + LDVEDPI +Y+LE Sbjct: 20 ERLGLELVDVEYKKEGGRWVLRVFIDKPSGVTLDDCEALSEALGEALDVEDPIPHSYSLE 79 Query: 76 VSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTVEGKDEV 135 VSSPG++RPL H+ RFVG EV + V+ +R++ GV+ A D E I + +GK+ Sbjct: 80 VSSPGVERPLKKPAHFQRFVGREVRVSTLAPVEGQRRFTGVLLAADEEGIRLETDGKELD 139 Query: 136 FALSNIQKANLV 147 I KANLV Sbjct: 140 LPYRLIAKANLV 151 >UniRef50_C7LRI2 Putative uncharacterized protein n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LRI2_DESBD Length = 162 Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 55/144 (38%), Positives = 89/144 (61%), Gaps = 3/144 (2%) Query: 7 KLTEMITAPVEALGFELVGIEFI---RGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLD 63 +L EM+T EA E+ GIE + GR +R+Y+DS+ G+ +D+C++VS +S LD Sbjct: 9 RLMEMVTPLCEARDLEVWGIELLFAAGGRHKIVRVYLDSQQGVGIDECSEVSRHLSLALD 68 Query: 64 VEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGE 123 VED I A+NLEVSSPGL+RP F+ E +VG+ V + L ++ R+ ++G + +++ Sbjct: 69 VEDIIPGAFNLEVSSPGLERPFFSTEQMLPYVGQTVRIRLDNPLEGRKNFKGRLLSIESP 128 Query: 124 MITVTVEGKDEVFALSNIQKANLV 147 M T++ + ++ KANLV Sbjct: 129 MFTLSDDSTTFELNWDDVGKANLV 152 >UniRef50_Q1GXD8 Ribosome maturation factor rimP n=16 Tax=Betaproteobacteria RepID=RIMP_METFK Length = 144 Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 56/145 (38%), Positives = 85/145 (58%), Gaps = 2/145 (1%) Query: 6 QKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVE 65 Q L ++ + LG+ELV +E + R +R++ID +GIN+DDC VS+ +S +L VE Sbjct: 2 QDLNALLERSLGQLGYELVDME-LANRGKLIRLFIDKPEGINIDDCVLVSNHLSNLLAVE 60 Query: 66 DPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMI 125 I LE+SSPGLDR L + RF GE + LRM ++ R+ + G+++ VD E + Sbjct: 61 HDIDYD-RLEISSPGLDRVLKKTSDFVRFAGERAQVKLRMPIEGRKNFLGILRGVDQEYL 119 Query: 126 TVTVEGKDEVFALSNIQKANLVPHF 150 + +G ++ SNI KA L P F Sbjct: 120 VLECDGVEQRVPFSNIDKARLSPEF 144 >UniRef50_C7MNM1 Uncharacterized conserved protein n=4 Tax=Coriobacteriaceae RepID=C7MNM1_CRYCD Length = 177 Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 55/149 (36%), Positives = 89/149 (59%), Gaps = 3/149 (2%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGRTS-TLRIYIDSEDGINVDDCADVSHQVS 59 ++ E +L E + G E+V IE + R + T+R++ID+ DG++ D A ++ Sbjct: 21 LTGKETRLLEALEPTAREKGIEIVSIEIVGSRKAPTIRVFIDTPDGVSFDALASAQSWIN 80 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 ++D DP AY LEVSSPG+DRPL T EH+ RF G+E +VLR + R K+ G++K Sbjct: 81 EIMDAIDPFPGAYMLEVSSPGIDRPLRTPEHFQRFSGQEAQIVLRAPIDGRSKFTGMLKG 140 Query: 120 VDGEMITVTVEGKDEVFALS--NIQKANL 146 + + V+G DEV +++ I++A+L Sbjct: 141 FADGAVLLLVDGADEVTSINYDAIKRAHL 169 >UniRef50_C6C0D6 Ribosome maturation factor rimP n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=RIMP_DESAD Length = 155 Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 51/150 (34%), Positives = 95/150 (63%), Gaps = 2/150 (1%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVL 62 +L +K+++ + +E++G L G+E + IYIDSE+G+++D CA+VS V +L Sbjct: 5 SLAKKVSQFVEPTIESMGLTLWGVEVTSANRPAVIIYIDSENGVSIDQCAEVSRDVGLML 64 Query: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 +VE+ I AY LEVSSPGL+R F E + +VG+++ + L +++ R+K++G+++ D Sbjct: 65 EVEEVIDSAYVLEVSSPGLERKFFKPEQMSAYVGKKIDIALVFSLEGRKKFKGLLQETDE 124 Query: 123 EMITVTVEGKDEVFALS--NIQKANLVPHF 150 E + + +E +++ + I+KA L+ F Sbjct: 125 EGLLLKLEDQEDPIKIEWDRIKKAKLIHEF 154 >UniRef50_Q3IYN8 Ribosome maturation factor rimP n=10 Tax=Rhodobacterales RepID=RIMP_RHOS4 Length = 204 Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 54/134 (40%), Positives = 87/134 (64%), Gaps = 2/134 (1%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSA 60 + ++++L +++T +E +GFELV + + G+T TL+I D DG I VD+CA++S VSA Sbjct: 8 TAIDRRLADIVTPVIEGMGFELVRLRLMSGKTRTLQIMADRPDGGIVVDECAEISTAVSA 67 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 LDVEDPI Y LEVSSPG+DRPL + + + G E + + RR+++G + Sbjct: 68 ALDVEDPIEENYTLEVSSPGIDRPLTRLKDFEVWTGYEARIETTELIDGRRRFKGELAGT 127 Query: 121 DGEMITVTVE-GKD 133 +G+ + +T+E G+D Sbjct: 128 EGDEVLITIEDGRD 141 >UniRef50_B5YEH1 Ribosome maturation factor rimP n=2 Tax=Dictyoglomus RepID=RIMP_DICT6 Length = 156 Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 56/146 (38%), Positives = 87/146 (59%), Gaps = 1/146 (0%) Query: 6 QKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDV 64 +KL E++ E +ELV +E+ R LR+YID G+ V+DCA +S ++S LD+ Sbjct: 11 KKLKEIVEPICEKYSYELVDLEYRREPHGWVLRVYIDKVGGVTVEDCAYLSEKISKELDI 70 Query: 65 EDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEM 124 +DPI +Y LEVSSPGLDRPL + R +GE+V + L ++ ++K++G I VD Sbjct: 71 KDPIPHSYILEVSSPGLDRPLKRKRDFERHMGEKVNITLLEEIEGKKKFEGKIFKVDESS 130 Query: 125 ITVTVEGKDEVFALSNIQKANLVPHF 150 +T+ ++ L I+KA L+ F Sbjct: 131 VTLKIDDSFVTIPLEKIKKAMLIVEF 156 >UniRef50_Q2VZU7 Ribosome maturation factor rimP n=4 Tax=Alphaproteobacteria RepID=RIMP_MAGSA Length = 166 Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 57/149 (38%), Positives = 93/149 (62%), Gaps = 5/149 (3%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGI--NVDDCADVSHQVSAV 61 L+ +L +I ++A+G+ELV ++ + TL+I D +DG+ VDDCAD+S VSA+ Sbjct: 3 LQSRLEALIAPSLDAMGYELVRVQLQGKQRLTLQIMADRKDGVMMAVDDCADISRSVSAL 62 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 LDVEDPI+ AY LEVSSPG+DRPL A+ + + G E + + R++++G + +D Sbjct: 63 LDVEDPISAAYTLEVSSPGIDRPLTRAKDFVAWAGFEAKMESCQPIDGRKRFRGKLLGLD 122 Query: 122 --GEMITVTVEGKDEV-FALSNIQKANLV 147 G + + +E E+ L++++ A LV Sbjct: 123 EAGVNVRLVIEAAGEIAIPLADVRGAKLV 151 >UniRef50_Q5F799 Ribosome maturation factor rimP n=27 Tax=Neisseria RepID=RIMP_NEIG1 Length = 149 Score = 105 bits (263), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 57/134 (42%), Positives = 79/134 (58%), Gaps = 6/134 (4%) Query: 18 ALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPITVAY-NLEV 76 LG+ELV E TLR++ID E GI V+DCA VS+ +S V VED + Y NLE+ Sbjct: 19 GLGYELVDFEL--AAQGTLRVFIDKEGGITVEDCATVSNHLSRVFMVED---IGYKNLEI 73 Query: 77 SSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTVEGKDEVF 136 SSPGLDRPL A + RF G+ + R+ + ++ + G I+ + + +TV+ +GK Sbjct: 74 SSPGLDRPLKKAADFVRFAGQNAKIKTRLPIGGQKNFIGKIEGCENDTVTVSFDGKTVQI 133 Query: 137 ALSNIQKANLVPHF 150 L NI KA L P F Sbjct: 134 ELGNIDKARLRPEF 147 >UniRef50_A4XL73 Ribosome maturation factor rimP n=2 Tax=Clostridia RepID=RIMP_CALS8 Length = 151 Score = 105 bits (262), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 54/151 (35%), Positives = 87/151 (57%), Gaps = 1/151 (0%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVS 59 MS + +K+ E++ +E GF+LV IEF + G+ LR+YID GI +DDC VS ++S Sbjct: 1 MSKVTKKVEELVKPILEKYGFDLVDIEFKKEGKKHFLRVYIDKPGGITIDDCQLVSEELS 60 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 LD+ DPI +Y LEVSSPG+DRPL + R G V + L+ + N K G + Sbjct: 61 NKLDIVDPIPFSYYLEVSSPGVDRPLVNDRDFIRNKGRVVDVFLKQPIMNTTKLTGELVE 120 Query: 120 VDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 + +++ + ++G++ N++K + F Sbjct: 121 KNEDVLIIMIDGENISIPFENVKKVKVAIRF 151 >UniRef50_B8FR10 Ribosome maturation factor rimP n=2 Tax=Desulfitobacterium hafniense RepID=RIMP_DESHD Length = 152 Score = 105 bits (261), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 63/151 (41%), Positives = 88/151 (58%), Gaps = 4/151 (2%) Query: 2 STLEQKLTEMITAPV-EALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVS 59 S +EQ E I APV G ELV +E+++ G LRIYID E G+++DDC +VSH VS Sbjct: 4 SIMEQ--VEAIIAPVITEQGLELVDVEYVKEGAHWYLRIYIDKEGGVDIDDCTNVSHLVS 61 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 VLD DPI AY LEVSSPGL+RPL E + RF G+ V ++ + Q +++ G + Sbjct: 62 EVLDKHDPIAQAYMLEVSSPGLERPLKKDEDFERFTGKLVRVLTKEVYQGYKEFTGYLVG 121 Query: 120 VDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 + + I + E + + + KANL F Sbjct: 122 LIEDDIVLEYEKERMAIPRAIVDKANLTFEF 152 >UniRef50_Q895K1 Ribosome maturation factor rimP n=1 Tax=Clostridium tetani RepID=RIMP_CLOTE Length = 153 Score = 105 bits (261), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 56/147 (38%), Positives = 84/147 (57%), Gaps = 1/147 (0%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSA 60 T L E+ V L +EL +EF+ + + LRIYIDSE GI ++DC VS VSA Sbjct: 4 KTFIDNLKELTEPIVNDLDYELYYLEFVNENKENYLRIYIDSESGIGLEDCEKVSRAVSA 63 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 +LD +DPI +Y LEVSSPGL+R L+ +H +G+ + L RK++G +K+ Sbjct: 64 MLDEKDPIDTSYYLEVSSPGLERQLYDDKHIEDNIGKTACVRLESLFNGGRKFEGKLKSF 123 Query: 121 DGEMITVTVEGKDEVFALSNIQKANLV 147 D E +T+ + +D I++ NL+ Sbjct: 124 DNENLTLEINAEDFKIPRKKIKRINLI 150 >UniRef50_B6IVF3 Ribosome maturation factor rimP n=1 Tax=Rhodospirillum centenum SW RepID=RIMP_RHOCS Length = 252 Score = 104 bits (260), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 50/126 (39%), Positives = 81/126 (64%), Gaps = 2/126 (1%) Query: 6 QKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG--INVDDCADVSHQVSAVLD 63 +++ +I VEA+G+ELV ++ G+ TL+I + DG + V+DCAD+S VSA+LD Sbjct: 5 ERIGRIIEPSVEAMGYELVRVQLSGGQRPTLQIMAERSDGAAMTVEDCADISRAVSALLD 64 Query: 64 VEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGE 123 VEDP+ AY LEVSSPG+DRPL + + RF G E L + V R++++G + ++ + Sbjct: 65 VEDPLPGAYTLEVSSPGIDRPLTRLKDFERFAGFEARLETKAPVDGRKRFRGFLAGIEDD 124 Query: 124 MITVTV 129 + + + Sbjct: 125 AVRLAL 130 >UniRef50_B5EMC8 Ribosome maturation factor rimP n=2 Tax=Acidithiobacillus ferrooxidans RepID=RIMP_ACIF5 Length = 153 Score = 104 bits (260), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 60/153 (39%), Positives = 84/153 (54%), Gaps = 3/153 (1%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSED--GINVDDCADVSHQ 57 M +E +L E I G LV +R GR L+++I+ ++ + ++DCA VS Q Sbjct: 1 MVNVEDRLYEGIAQQAGIAGCTLVDARMVRTGRAVALQVFIEKDETTAVTIEDCAAVSRQ 60 Query: 58 VSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI 117 +S LDVE+PI AY LEVSSPGLDRPL + RF G + + L Q RR+ QG + Sbjct: 61 LSLWLDVENPIHGAYRLEVSSPGLDRPLKNLHDFERFKGSQAEIHLHGLTQGRRRLQGEL 120 Query: 118 KAVDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 V+ + I + FAL +I KA LVP + Sbjct: 121 LGVEDQKIVLKNAEGRWTFALDDIHKARLVPQW 153 >UniRef50_Q14K22 Ribosome maturation factor rimP n=15 Tax=Francisella RepID=RIMP_FRAT1 Length = 152 Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 58/151 (38%), Positives = 88/151 (58%), Gaps = 1/151 (0%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSA 60 M L L E++ LG+ L GIE + T+RI+ID E+G++VDDC VS ++SA Sbjct: 1 MKMLLDDLYEIVEPITADLGYILWGIEVVGSGKLTIRIFIDHENGVSVDDCQIVSKEISA 60 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 V DVEDP++ Y LEVSSPG++R +F VG V V V ++ K++GV++ V Sbjct: 61 VFDVEDPVSGKYILEVSSPGMNRQIFNIIQAQALVGFNVKAVTLAPVGSQTKFKGVLERV 120 Query: 121 DGEMITVTVE-GKDEVFALSNIQKANLVPHF 150 +G + + +E GK+ F ++K + P F Sbjct: 121 EGNNVILNLEDGKEISFDFDELKKLRVSPDF 151 >UniRef50_B0K1E0 Ribosome maturation factor rimP n=18 Tax=Clostridia RepID=RIMP_THEPX Length = 151 Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 57/151 (37%), Positives = 85/151 (56%), Gaps = 1/151 (0%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVS 59 MS +EQ +++ +E FELV +E+ + G LR+YID E GI +DDC VS +S Sbjct: 1 MSKIEQIAKDLVMPILEKNNFELVDVEYKKEGSHWYLRVYIDKEGGITLDDCQLVSEYLS 60 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 LD DPI +Y LEVSSPGLDRPL + R +G+E+ + L + R+K++G + Sbjct: 61 DRLDEVDPIEHSYILEVSSPGLDRPLKKPRDFERNIGKEIEISLYTPIDKRKKFEGELIE 120 Query: 120 VDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 G+ I + G+ + F + N+ V F Sbjct: 121 FTGDKIIILYNGERKEFDMKNVSLVKPVIKF 151 >UniRef50_D1Y7J0 Putative uncharacterized protein n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y7J0_9BACT Length = 165 Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 56/144 (38%), Positives = 85/144 (59%), Gaps = 2/144 (1%) Query: 6 QKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLD- 63 +K++ + VE+LG+E VG E ++ + LR+YID + G+ +DDC + ++ A+LD Sbjct: 4 EKISGQLKTLVESLGYEFVGAETVKEAGSQILRVYIDRDGGVGLDDCERSAKEIGALLDT 63 Query: 64 VEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGE 123 D Y LEVSSPGL+RPLF AE YARF G V + L+ + RR+ VI+ V Sbjct: 64 AADAFEDHYLLEVSSPGLERPLFKAEDYARFAGRPVNVRLKGVYEGRRRVTAVIEGVKDG 123 Query: 124 MITVTVEGKDEVFALSNIQKANLV 147 + + G+ L+ IQ+A+LV Sbjct: 124 SVLLDCGGEPLDLPLAEIQRAHLV 147 >UniRef50_A1AML8 Ribosome maturation factor rimP n=8 Tax=Desulfuromonadales RepID=RIMP_PELPD Length = 161 Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 59/142 (41%), Positives = 85/142 (59%), Gaps = 7/142 (4%) Query: 16 VEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPITVAYNL 74 ++++ ELV +E+ R GR + LR++ID E G+ +DDCAD+S ++S +LDVED I Y+L Sbjct: 20 IDSMNLELVEVEYKRSGREAVLRLFIDKEGGVTLDDCADLSRELSTLLDVEDLIPCEYSL 79 Query: 75 EVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQ----NRRK-WQGVIKAV-DGEMITVT 128 EVSSPGLDRPL + Y RF G + + Q NRRK + G ++ + DG ++ Sbjct: 80 EVSSPGLDRPLKSEADYERFSGRLIKVRTYEPYQDDAGNRRKTFLGRLEGLKDGSVVMSL 139 Query: 129 VEGKDEVFALSNIQKANLVPHF 150 EG+ L I KA L F Sbjct: 140 TEGQTASIPLERIAKAQLEFEF 161 >UniRef50_Q72EQ8 Ribosome maturation factor rimP n=3 Tax=Desulfovibrio vulgaris RepID=RIMP_DESVH Length = 172 Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 57/156 (36%), Positives = 88/156 (56%), Gaps = 11/156 (7%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVL 62 L+ + +M + +LG EL GIE G + +R+++D +G+ +D CA+VS V L Sbjct: 5 ALDATIADMAGPFLASLGLELWGIELSYGGRTVVRLFVDGPEGVTIDQCAEVSRHVGLAL 64 Query: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVL---RMAVQNRRKWQGVIKA 119 +VED I+ AY LEVSSPGL+RP F AE + +VG ++ L L RRK++G + A Sbjct: 65 EVEDVISSAYVLEVSSPGLERPFFRAEQMSPYVGRQIELTLIDPTPEWPGRRKFRGELLA 124 Query: 120 VDGEMITVTVEGKDEVFA--------LSNIQKANLV 147 V+G+ + + EG A ++KANL+ Sbjct: 125 VEGDTVVLRPEGAPAPEAEEAVLRTSWQGVRKANLI 160 >UniRef50_Q1NIJ0 Putative uncharacterized protein n=2 Tax=Deltaproteobacteria RepID=Q1NIJ0_9DELT Length = 155 Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 57/147 (38%), Positives = 83/147 (56%), Gaps = 1/147 (0%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTS-TLRIYIDSEDGINVDDCADVSHQVSA 60 L +LTE++ VE G EL ++F R LR+ ID +DG+ +DDC +S +VS Sbjct: 6 KALSARLTELLQPVVEDHGLELADLQFRREPAGWVLRLVIDGDDGVTLDDCTRISREVSH 65 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 +L+VEDPI A+NLEVSSPGLDRPL + Y R G + LV R + G I + Sbjct: 66 LLEVEDPIEQAFNLEVSSPGLDRPLKREQDYRRCRGRKAKLVCREPIAGEPVVIGEIGEM 125 Query: 121 DGEMITVTVEGKDEVFALSNIQKANLV 147 +++T+ E L+ +++A LV Sbjct: 126 AEQVVTIITEAGPVAVPLAQVKRARLV 152 >UniRef50_C5VSJ6 Putative uncharacterized protein n=1 Tax=Clostridium botulinum D str. 1873 RepID=C5VSJ6_CLOBO Length = 154 Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 51/122 (41%), Positives = 76/122 (62%), Gaps = 1/122 (0%) Query: 7 KLTEMITAPVEALGFELVGIEFIRGRTST-LRIYIDSEDGINVDDCADVSHQVSAVLDVE 65 K+ E++ VE L +EL IE++R + LRIYIDS GIN++DC VS +VS +LD + Sbjct: 10 KINELVRPIVEGLNYELYYIEYVREQNENYLRIYIDSSKGINLEDCEKVSRKVSDMLDEK 69 Query: 66 DPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMI 125 DPI Y LEVSSPG++R L T EH +++ ++ + L + R+ QG + + E I Sbjct: 70 DPIEDGYYLEVSSPGIERVLHTDEHLHKYINNQIVIKLAKLFEGSREHQGKLLNFNDESI 129 Query: 126 TV 127 T+ Sbjct: 130 TI 131 >UniRef50_Q97I55 Ribosome maturation factor rimP n=1 Tax=Clostridium acetobutylicum RepID=RIMP_CLOAB Length = 149 Score = 102 bits (254), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 52/124 (41%), Positives = 78/124 (62%), Gaps = 1/124 (0%) Query: 7 KLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVE 65 KL E+I VE+LG+E IE ++ LR+YID E+GI++DDC VS +S +LD + Sbjct: 4 KLIEIIRPVVESLGYEFYHIEIVKEDGERYLRVYIDKENGISLDDCEKVSRAISDLLDEK 63 Query: 66 DPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMI 125 DPI +Y LEVSSPG+ R LFT EH +++G V + L+ +++ + G + V+ E I Sbjct: 64 DPIPYSYYLEVSSPGIYRTLFTEEHLKKYIGNTVDIKLKSSLEKSTNYSGKLIDVNEEDI 123 Query: 126 TVTV 129 + V Sbjct: 124 VIVV 127 >UniRef50_A8GW29 Ribosome maturation factor rimP n=13 Tax=Rickettsia RepID=RIMP_RICB8 Length = 168 Score = 102 bits (253), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 57/150 (38%), Positives = 91/150 (60%), Gaps = 4/150 (2%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGRTSTL-RIYIDSED--GINVDDCADVSHQ 57 M T+EQ++T++I + +GFELV + ++G +S + I ID D + ++DC S+ Sbjct: 1 MQTIEQQITDLIQETLSDMGFELVLVR-VKGLSSKVVEILIDRLDDQKVTIEDCTKASNT 59 Query: 58 VSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI 117 +SA+LDVED I AY LEVSS G++RPL E+Y RF+G EV + L+ + R ++QG I Sbjct: 60 ISAILDVEDLIEEAYYLEVSSSGVERPLVKFENYKRFIGREVKIKLKELLNGRSRYQGTI 119 Query: 118 KAVDGEMITVTVEGKDEVFALSNIQKANLV 147 + + + E ++ + I+ ANLV Sbjct: 120 IEAKDDKVYLKWEDQEVIINYDLIKSANLV 149 >UniRef50_B2I724 Ribosome maturation factor rimP n=20 Tax=Xanthomonadaceae RepID=RIMP_XYLF2 Length = 199 Score = 102 bits (253), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 62/159 (38%), Positives = 91/159 (57%), Gaps = 9/159 (5%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYID------SEDGINVDDCAD 53 MS ++ ++ VE LGF+L+G E++ + LR+YID E +++DDC Sbjct: 1 MSDKGIEIVNLLAPKVEMLGFDLLGAEYLLVPSGAILRLYIDIPFAMQPECMVSIDDCER 60 Query: 54 VSHQVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKW 113 VS +VSA LD+E+PI+ Y LEVSSPGLDR LFT E +AR V + L++ R+ Sbjct: 61 VSREVSAYLDLEEPISGNYTLEVSSPGLDRRLFTLEQFARHHNHLVKVGLKLQQHGSRRL 120 Query: 114 QGVIKAVD--GEMITVTVEGKDEVFALSNIQKANLVPHF 150 QG I V+ G + + V G + +NI KA +VP + Sbjct: 121 QGKIVRVEQVGGFVVLLVNGVELAVDFNNIDKARIVPDW 159 >UniRef50_C6D2F6 Putative uncharacterized protein n=3 Tax=Bacillales RepID=C6D2F6_PAESJ Length = 153 Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 55/149 (36%), Positives = 88/149 (59%), Gaps = 3/149 (2%) Query: 1 MSTLEQK--LTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQ 57 MST + K + M+T +++ GFELV IE+++ G LR+++D E GI++D+C VS Sbjct: 1 MSTSKIKTVVEAMVTPFLDSNGFELVDIEYVKEGSNYFLRVFVDKEGGIDIDECGKVSEF 60 Query: 58 VSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI 117 +S LD DP++ AY LEVSSPG +RPL + + VG+ V + + ++++G + Sbjct: 61 LSEELDKNDPVSDAYFLEVSSPGAERPLKKPDDVRKAVGKHVYITTYEPIDGSKEFEGQL 120 Query: 118 KAVDGEMITVTVEGKDEVFALSNIQKANL 146 A DGE TV + K+ V + + A L Sbjct: 121 TAFDGEQATVKIGKKEHVIPYAKVASARL 149 >UniRef50_Q3A4B0 Ribosome maturation factor rimP n=3 Tax=Desulfuromonadales RepID=RIMP_PELCD Length = 162 Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 59/159 (37%), Positives = 90/159 (56%), Gaps = 10/159 (6%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSA 60 T+ K+ ++ +E G ELV +E+ R G+ LR+YID G+ +D CA+VS +V Sbjct: 4 QTVLDKIRSLVLPVLEEKGRELVDVEYRREGQGWILRLYIDQPGGVTLDACAEVSREVGV 63 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAV------QNRRKWQ 114 +L+VEDPI AYNLEVSSPGLDRPL E Y RF G + R+++ + R+ + Sbjct: 64 LLEVEDPIDTAYNLEVSSPGLDRPLTKLEDYERFAGRLAKVKSRVSIDVDGKGRGRKTFV 123 Query: 115 GVIKAVDGEMITVTVEGKDEV---FALSNIQKANLVPHF 150 GV+ + + + ++ K+ +I+KANL F Sbjct: 124 GVLAGLSEGKVVLELKDKNGFRMEIPFEDIEKANLEIEF 162 >UniRef50_C6LLB2 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=C6LLB2_9FIRM Length = 201 Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 57/133 (42%), Positives = 85/133 (63%), Gaps = 3/133 (2%) Query: 5 EQKLTEMITAP-VEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVL 62 EQK TE I P V+A GFELV +E+++ G + LR YID GI VDDC VS + +L Sbjct: 54 EQK-TEAILQPIVDANGFELVDVEYVKEGGSWYLRAYIDKPGGITVDDCELVSRAANDIL 112 Query: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 D +D + +Y EVSSPGL RPL + + R +GEEV + A++ ++++ G++KA D Sbjct: 113 DEQDFVEESYIFEVSSPGLGRPLKKEKDFVRSIGEEVEIRTFRAIEKQKEFYGILKAFDK 172 Query: 123 EMITVTVEGKDEV 135 E +T+ +E + E+ Sbjct: 173 ESVTIVLEDESEM 185 >UniRef50_Q2RJM9 Ribosome maturation factor rimP n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=RIMP_MOOTA Length = 158 Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 58/149 (38%), Positives = 85/149 (57%), Gaps = 2/149 (1%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVS 59 MS L + E++ + +G+ELV +++ R G LR++ID +GI +DDC VS VS Sbjct: 1 MSKLTALIQELVEPLLTPMGYELVDLQYGREGGRYILRLFIDRPEGIGLDDCEQVSRVVS 60 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQG-VIK 118 A+LD +DPI +Y LEVSSPGL+RPL + RF G +V L + +R +QG ++ Sbjct: 61 ALLDEKDPIPHSYYLEVSSPGLERPLKKEADFNRFAGRKVKLRTFAPINGQRHFQGRLLG 120 Query: 119 AVDGEMITVTVEGKDEVFALSNIQKANLV 147 DG++ EG D L + A LV Sbjct: 121 YQDGQVRMHLEEGWDLAIPLEQVATARLV 149 >UniRef50_C0QTL6 Ribosome maturation factor rimP n=4 Tax=Hydrogenothermaceae RepID=RIMP_PERMH Length = 151 Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 85/141 (60%) Query: 6 QKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVE 65 +K+ EM+ +E G +LV IE++ LRIYI + +G ++DC +S ++ A+LD+E Sbjct: 7 EKVKEMLQPLLEERGLKLVDIEYVTEGKPVLRIYIYNPEGTTIEDCEWISRRIGALLDIE 66 Query: 66 DPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMI 125 D I V+Y LEVSSPGL+R L E Y F G ++ +VL+ V + +GV+K + I Sbjct: 67 DLIPVSYTLEVSSPGLERKLKNVEEYDIFKGRDIKIVLKEPVDKKNVIKGVLKGREDNNI 126 Query: 126 TVTVEGKDEVFALSNIQKANL 146 V EG++ L NI +ANL Sbjct: 127 IVEEEGEEVRIPLENIARANL 147 >UniRef50_C4Z5N3 Ribosome maturation factor rimP n=10 Tax=Bacteria RepID=RIMP_EUBE2 Length = 156 Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 51/140 (36%), Positives = 82/140 (58%), Gaps = 1/140 (0%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAV 61 + E K TE+I VEA G EL +++++ G LR+YID E G+ +DDC +VS + + Sbjct: 6 SYEAKTTELIQPVVEANGVELFDVDYVKEGSDWYLRVYIDKEGGVTIDDCQNVSRAFNEI 65 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 LD E+ I Y EVSSPGL RPL + Y + +G + + L V +++ GV+K D Sbjct: 66 LDRENYIDDQYIFEVSSPGLTRPLKKEKDYEKSIGRMIEIKLFSPVDKSKEYSGVLKEYD 125 Query: 122 GEMITVTVEGKDEVFALSNI 141 + +T++++ + F SN+ Sbjct: 126 KDTVTISIDDVTKTFDRSNL 145 >UniRef50_C0GUB7 Putative uncharacterized protein n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GUB7_9DELT Length = 154 Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 49/148 (33%), Positives = 86/148 (58%), Gaps = 4/148 (2%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIRG---RTSTLRIYIDSEDGINVDDCADVSHQVSA 60 +++++ E++ +G E G++F+ G + LR+++DS +G+++D CAD+S Q+S Sbjct: 6 IKKQVEELVQTNCRLMGLEPWGMDFVPGTGKQRGVLRVFVDSPEGVSIDQCADLSRQLSV 65 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 LDVED + +YNLEVSSPGL+R F E + + G +V + L+ R+ + G ++ Sbjct: 66 ALDVEDLVPGSYNLEVSSPGLNRRFFRPEQMSGYTGHKVKITLKEPRDGRKNFTGTLQEA 125 Query: 121 DGEMITV-TVEGKDEVFALSNIQKANLV 147 + E I++ T F I +A LV Sbjct: 126 ENETISIQTSPDCTWSFQWDEIDRARLV 153 >UniRef50_Q0SSD0 Ribosome maturation factor rimP n=16 Tax=Clostridium RepID=RIMP_CLOPS Length = 154 Score = 98.6 bits (244), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 55/140 (39%), Positives = 86/140 (61%), Gaps = 3/140 (2%) Query: 10 EMITAP-VEALGFELVGIEFIRGRTST-LRIYIDS-EDGINVDDCADVSHQVSAVLDVED 66 E + AP V+ G++L IE+++ LR+YI+ E+ I++ DC VS +S +LD+ED Sbjct: 11 EALCAPIVKEKGYDLYHIEYVKENNEYYLRLYIEKPEERISLRDCEIVSRALSDMLDIED 70 Query: 67 PITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMIT 126 PI AY LEVSSPGL+R L + EH+ RF+G+E+ + + ++ R+ +G++K V I Sbjct: 71 PIKDAYFLEVSSPGLNRRLHSDEHFNRFIGKEIFVGFKSSLSGRKNVKGILKDVQENEII 130 Query: 127 VTVEGKDEVFALSNIQKANL 146 V EG + I+ ANL Sbjct: 131 VECEGNEIKVPKDKIKTANL 150 >UniRef50_D0LZ93 Putative uncharacterized protein n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LZ93_HALO1 Length = 209 Score = 98.6 bits (244), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 90/168 (53%), Gaps = 20/168 (11%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIRGRTSTL-RIYIDSEDG--------------IN 47 ++ ++L + + G+ELV + + R L +++ID ++ Sbjct: 31 SMTEQLMRIAEPVCASAGYELVDLSLTQSRVGWLVQVFIDHMHSDETSTVAGGEEASEVS 90 Query: 48 VDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMA- 106 ++DC VS ++SAVLDVEDP+ AYNLEVSSPGLDRPL T H+ RF G EV + L Sbjct: 91 LEDCEHVSRELSAVLDVEDPLPFAYNLEVSSPGLDRPLRTVAHFQRFAGHEVKVRLDGTG 150 Query: 107 -VQNRRKWQGVIKAVDGEM---ITVTVEGKDEVFALSNIQKANLVPHF 150 RR ++G ++AV E I V V+G + +I+ A +VP + Sbjct: 151 DATGRRNFKGRLEAVSAEAPASIVVNVDGAPHTLLIDDIESARVVPDW 198 >UniRef50_B0THQ9 Ribosome maturation factor rimP n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=RIMP_HELMI Length = 154 Score = 98.2 bits (243), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 82/148 (55%), Gaps = 1/148 (0%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVL 62 LE +++ VE LG EL+ +E+++ G LRI+ID E GI ++DC +VS ++ +L Sbjct: 7 LEDRVSAWAMPIVEELGLELIDVEWVKEGGNWYLRIFIDKEAGIEMEDCQEVSRRIDEIL 66 Query: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 D EDP+ +Y+LEVSSPG+DRPL + Y RF GE V + V ++ G + + Sbjct: 67 DREDPVAHSYSLEVSSPGIDRPLKSDRDYERFRGETVRITTFAPVMGAKEHLGELAGKNE 126 Query: 123 EMITVTVEGKDEVFALSNIQKANLVPHF 150 I + ++ L+ + L P F Sbjct: 127 TSILIRKNDEEMAIPLTQVSSVRLYPGF 154 >UniRef50_B4U6H1 Ribosome maturation factor rimP n=3 Tax=Aquificaceae RepID=RIMP_HYDS0 Length = 154 Score = 98.2 bits (243), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 53/139 (38%), Positives = 79/139 (56%) Query: 8 LTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDP 67 + +++ + LGF L +EF LRI ID E G+ +DDC ++S +VSA+LDVED Sbjct: 11 VKDLVKPISDNLGFRLFDVEFKPENGWVLRIIIDKEGGVTIDDCEELSKRVSALLDVEDV 70 Query: 68 ITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITV 127 IT +Y LEVSSPGL R L HY F G+ L L+ + N++++ G I +V+ + + + Sbjct: 71 ITSSYFLEVSSPGLTRELKEKWHYEFFKGKYARLYLKEKIDNKQEYAGYIDSVEDDTLVL 130 Query: 128 TVEGKDEVFALSNIQKANL 146 + K I KA L Sbjct: 131 RLLDKTLKIPFDKIAKARL 149 >UniRef50_A6NTX5 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NTX5_9BACE Length = 151 Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 57/145 (39%), Positives = 84/145 (57%), Gaps = 5/145 (3%) Query: 7 KLTEMITA---PVEAL-GFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAV 61 K+TE++ A P+ A G + +E++R T LR+Y+D E G+N+DDC VS +S Sbjct: 3 KVTELVRALAQPIAAENGCSIWDVEYVREAGTWFLRVYLDKEGGVNIDDCEAVSRPLSDA 62 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 LD DPI +Y LEVSS G+DR L EH+ F+G EV + L V+ R+ G++KA D Sbjct: 63 LDEADPIEGSYTLEVSSAGIDRVLRHPEHFDAFLGAEVEVRLYRPVEGRKDHVGLLKAYD 122 Query: 122 GEMITVTVEGKDEVFALSNIQKANL 146 +TVT+ D F ++ + L Sbjct: 123 NGDVTVTLPSGDVTFPKKDVAQVRL 147 >UniRef50_B1LX00 Ribosome maturation factor rimP n=6 Tax=Methylobacterium RepID=RIMP_METRJ Length = 257 Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 48/128 (37%), Positives = 74/128 (57%), Gaps = 1/128 (0%) Query: 7 KLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVE 65 ++ + I P+ LGF LV + T++I + DG +DDC VS +S +LDV+ Sbjct: 23 RVAQAIEGPLAGLGFRLVRVRMSNVNGCTVQIMAERPDGTFTIDDCEAVSRAISPILDVD 82 Query: 66 DPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMI 125 DP+ AYNLEVSSPG+DRPL +AR+ G E + L + R++++G++ A D Sbjct: 83 DPVGGAYNLEVSSPGIDRPLVRVSDFARWAGYEAKVELSPPLDGRKRFRGILGAPDPTGT 142 Query: 126 TVTVEGKD 133 TV ++ D Sbjct: 143 TVPIDLPD 150 >UniRef50_Q3AB94 Ribosome maturation factor rimP n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=RIMP_CARHZ Length = 154 Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 57/151 (37%), Positives = 90/151 (59%), Gaps = 7/151 (4%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIR--GRTSTLRIYIDSEDGINVDDCADVSHQVSAV 61 +EQK+ + L E+V +EF++ GR LRIYID ++G+++DDC + S ++ + Sbjct: 7 IEQKVWPLAERVGGELNLEVVDVEFVKEAGRY-FLRIYIDKDEGVDLDDCQNFSERIGVI 65 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV- 120 LD EDPI +Y LEVSSPG++RPL + +F G E + A++ +++++G + V Sbjct: 66 LDEEDPIPQSYYLEVSSPGIERPLKKLADFEKFAGREAQIKTFAAIEGQKQFKGKLLGVR 125 Query: 121 DGEMITVTVEGKDEV-FALSNIQKANLVPHF 150 DG+++ GK EV L I KANL F Sbjct: 126 DGQVVIDA--GKGEVQIPLEQIAKANLTFDF 154 >UniRef50_C4V3N9 Protein of hypothetical function DUF150 n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V3N9_9FIRM Length = 163 Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 49/127 (38%), Positives = 76/127 (59%), Gaps = 1/127 (0%) Query: 2 STLEQKLTEMITAPVEAL-GFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSA 60 + +E+++ EM+ + L ELV +E+++ R S LR+YID GI++DDC +S ++ Sbjct: 17 AKIEERVEEMVRGLLTDLPAIELVDVEYVKERDSYLRVYIDKTGGIDIDDCQSLSERLEE 76 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 +LD ED I AY LEVSSPGLDR L + R G V + L + +++W G + Sbjct: 77 MLDREDFIPDAYILEVSSPGLDRVLRKERDFTREHGRTVDVTLYAPFEGKKQWTGTLAGY 136 Query: 121 DGEMITV 127 DGE +T+ Sbjct: 137 DGETLTL 143 >UniRef50_A8MHI0 Ribosome maturation factor rimP n=11 Tax=Clostridia RepID=RIMP_ALKOO Length = 154 Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 54/126 (42%), Positives = 74/126 (58%), Gaps = 2/126 (1%) Query: 6 QKLTEMITAPV-EALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLD 63 +K+TE + P+ + FELV +E+ + G LRIYID GI +DDC VS Q+ LD Sbjct: 7 EKITERLVMPIIQNENFELVDLEYKKEGSNWYLRIYIDKPGGITLDDCQKVSEQLGEELD 66 Query: 64 VEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGE 123 EDPI+ Y LEVSSPGLDRPL + RF GE V + L A+ + +G + ++ Sbjct: 67 REDPISENYFLEVSSPGLDRPLKKDSDFIRFAGEIVEVKLYEALNGNKVIEGELVGLEEN 126 Query: 124 MITVTV 129 MI + V Sbjct: 127 MIKINV 132 >UniRef50_Q8RHJ4 Ribosome maturation factor rimP n=9 Tax=Fusobacterium RepID=RIMP_FUSNN Length = 156 Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 95/147 (64%), Gaps = 4/147 (2%) Query: 6 QKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLD 63 +K+T ++ +E + LV +E+++ G +RI+I++ +G +N++DC+ +S ++ Sbjct: 9 EKITRIVNPFIEEMNLSLVDVEYVQDGGYWYVRIFIENLNGDLNIEDCSKLSSKIED--K 66 Query: 64 VEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGE 123 VE+ I + LEVSSPGL+RPL E Y RF+GE++TL L+ + ++++++ +IK V+G+ Sbjct: 67 VEELIEHKFFLEVSSPGLERPLKKLEDYTRFIGEKITLHLKHKLDDKKQFKTIIKEVNGD 126 Query: 124 MITVTVEGKDEVFALSNIQKANLVPHF 150 I ++ K+ + I+KAN++ F Sbjct: 127 NIIFLMDKKEVEIKFNEIRKANILFEF 153 >UniRef50_D1BM56 Putative uncharacterized protein n=4 Tax=Veillonellaceae RepID=D1BM56_VEIPT Length = 152 Score = 95.9 bits (237), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 51/147 (34%), Positives = 83/147 (56%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLD 63 +E+ ++ ++ + ELV ++++R R LR+Y+D G+++DDC VS ++SAVLD Sbjct: 6 VEEFVSSVVEGIIAGTDMELVDVDYVRERDWYLRVYLDKPGGVDLDDCQLVSEKLSAVLD 65 Query: 64 VEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGE 123 +DPIT Y LEVSSPGLDR L + R+ G +V + L A+ +++ G ++ Sbjct: 66 EKDPITENYLLEVSSPGLDRVLKKDKDLVRYNGRDVDIQLFKAINGSKQFTGALQGFTDT 125 Query: 124 MITVTVEGKDEVFALSNIQKANLVPHF 150 I T+ G+ F S I + L F Sbjct: 126 TIEFTINGESMTFERSTIAQIRLHLDF 152 >UniRef50_D2RKW8 Putative uncharacterized protein n=2 Tax=Acidaminococcus RepID=D2RKW8_ACIFE Length = 153 Score = 95.5 bits (236), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 56/149 (37%), Positives = 87/149 (58%), Gaps = 5/149 (3%) Query: 5 EQKLTEMIT---AP-VEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSA 60 ++K+TE +T AP VE G ELV +E++R R LR++ID GI++DDC+ VS+ ++ Sbjct: 3 KKKITERVTDLAAPIVEEAGLELVDVEYVRERDWFLRVFIDKAGGIDIDDCSAVSNALAK 62 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 LD ED I Y LEVSSPG+DRPL + G++V L + +++ V+K+ Sbjct: 63 KLDEEDFIKEKYYLEVSSPGIDRPLKKDKDLEAHYGQKVDLAFFAPYEGKKQLTAVLKSH 122 Query: 121 DGEMITVTVEGKDEVFALSNIQKANLVPH 149 D E + V + K + A+ A++ PH Sbjct: 123 DAEKL-VLEDAKKKKLAIERKLIASVRPH 150 >UniRef50_C6NSC0 Transcription termination protein NusA-like protein n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NSC0_9GAMM Length = 176 Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 62/149 (41%), Positives = 91/149 (61%), Gaps = 2/149 (1%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDG-INVDDCADVSHQVSAV 61 LE++L E I A+G +V + +R GR+ TL+++I+ ++G + ++DCA VS Q+S Sbjct: 28 LEERLLEGIAEQAAAMGCGVVDVRLLRVGRSVTLQVFIEKDEGAVTIEDCAAVSRQLSVW 87 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 LDVE+PI AY LEVSSPGLDRPL + RFVG + LR RR+W+G + Sbjct: 88 LDVENPIAGAYRLEVSSPGLDRPLKREADFQRFVGALAEIELRGLRDGRRRWRGRLLLAS 147 Query: 122 GEMITVTVEGKDEVFALSNIQKANLVPHF 150 + + V+G + F L+ I KA LVP + Sbjct: 148 PGSVALDVDGVRQEFLLAEILKAKLVPEW 176 >UniRef50_A9HF10 Ribosome maturation factor rimP n=10 Tax=Acetobacteraceae RepID=RIMP_GLUDA Length = 207 Score = 95.1 bits (235), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 56/151 (37%), Positives = 89/151 (58%), Gaps = 5/151 (3%) Query: 1 MSTLEQKLTEMITAPVEA-LGFELVGIEFIRGRTSTLRIYIDSEDG--INVDDCADVSHQ 57 ++ L+ K+ I APV A +GFELV + + + T++I D DG I ++DC +SH Sbjct: 8 LTGLDAKVA-AIVAPVLADMGFELVRVAILGRESPTVQIMADRADGTLIAIEDCEQISHA 66 Query: 58 VSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI 117 V AVLDVEDP+ A+ LEVSS G+DRPL A+ + RF G + + + R+++ G++ Sbjct: 67 VGAVLDVEDPLPGAWTLEVSSAGIDRPLTRAKDWTRFAGHLAKAEVNIPIDGRKRFSGIL 126 Query: 118 KAVDGEMITVTVEGKDEV-FALSNIQKANLV 147 + + +E EV LS++++A LV Sbjct: 127 LGAEDGFGRLRLEDGTEVALPLSDMRRARLV 157 >UniRef50_Q6AJY2 Ribosome maturation factor rimP n=1 Tax=Desulfotalea psychrophila RepID=RIMP_DESPS Length = 151 Score = 94.7 bits (234), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 52/144 (36%), Positives = 87/144 (60%), Gaps = 2/144 (1%) Query: 6 QKLTEMITAPVEALGFELVGIEF-IRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDV 64 +K+ + + ++++ ELV I+F G LR++ID E G+ +D CA VS +V LDV Sbjct: 7 EKIEGYVASVLQSMDVELVDIQFRCEGHGWVLRLFIDVEGGVTLDLCAQVSREVGQYLDV 66 Query: 65 EDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEM 124 ED I AY+LEVSSPG++RPL + ++ RF G++ + L + + ++G+I V+ Sbjct: 67 EDVIEQAYHLEVSSPGVERPLKSLANFERFAGKKARIKLHEPLNGEKTFEGIIGPVEDGE 126 Query: 125 ITVTVEGKDEV-FALSNIQKANLV 147 +++ V+GK V + + KA LV Sbjct: 127 VSLLVDGKIAVKCGIEQLNKARLV 150 >UniRef50_A7HZ90 Ribosome maturation factor rimP n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=RIMP_PARL1 Length = 207 Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 48/129 (37%), Positives = 82/129 (63%), Gaps = 3/129 (2%) Query: 6 QKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDV 64 +++ E + AP E GFE+V + F TL+I + DG + V+DCA++S +SA+LDV Sbjct: 32 RRVFEQLRAPAEGAGFEIVRVRFGVQDGQTLQIMAERPDGSMTVEDCAELSRMLSALLDV 91 Query: 65 EDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGE- 123 EDPI Y+LE+SS G+DRPL + + R+ G EV + L + R++++G+++ V+ + Sbjct: 92 EDPIPGEYHLEISSAGIDRPLTRPKDFERWSGFEVKVGLSEPLSGRKRFRGILQGVEDDE 151 Query: 124 -MITVTVEG 131 ++ +EG Sbjct: 152 VLVECDIEG 160 >UniRef50_A8EYF2 Ribosome maturation factor rimP n=1 Tax=Rickettsia canadensis str. McKiel RepID=RIMP_RICCK Length = 125 Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 50/122 (40%), Positives = 79/122 (64%), Gaps = 3/122 (2%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDS--EDGINVDDCADVSHQV 58 M T+EQ++T +I + +GFELV ++F + + I IDS + ++V+DC VS + Sbjct: 1 MQTIEQQITNVIEESLIDMGFELVLVKFKGVNSKVVEILIDSLNSEKVSVEDCTKVSRTI 60 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQG-VI 117 A+LDVE+ I A +LEV+S GL+RPL E+Y RF+G EV + L+ + ++ +QG +I Sbjct: 61 PAILDVENLIEDASSLEVASSGLERPLVKFENYNRFLGREVKITLKELLNDKTSYQGKII 120 Query: 118 KA 119 KA Sbjct: 121 KA 122 >UniRef50_Q09BT8 YlxS n=1 Tax=Stigmatella aurantiaca DW4/3-1 RepID=Q09BT8_STIAU Length = 249 Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/149 (38%), Positives = 83/149 (55%), Gaps = 5/149 (3%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIRGRTS-TLRIYIDSEDG-INVDDCADVSHQVSA 60 T+E++ ++ V G EL+ +EF+R R LR++ID G + +D+C+ VS V Sbjct: 97 TVEERAMTLLEPIVAGEGLELIDLEFVREREGWVLRLFIDKPGGRVGLDECSQVSRAVDP 156 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQN--RRKWQGVIK 118 LDVED + YNLEVSSPG++RPL HY R G++V + + + R+ + G + Sbjct: 157 ALDVEDLVPNEYNLEVSSPGVNRPLKKLSHYERVKGQKVKVKTFGPIGDPPRKNFSGTLT 216 Query: 119 AVDGEMITVTVEGKDEV-FALSNIQKANL 146 V E I V VEG L +I KANL Sbjct: 217 EVTAEGIAVEVEGAGAFRIPLKDIAKANL 245 >UniRef50_A0LHL6 Ribosome maturation factor rimP n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=RIMP_SYNFM Length = 168 Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 53/137 (38%), Positives = 81/137 (59%), Gaps = 2/137 (1%) Query: 12 ITAPV-EALGFELVGIEFIRGRTS-TLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPIT 69 +T PV A G E++ IE+ R LR+++D E G++VDDCA +S V +LDV D I Sbjct: 24 LTEPVIRAEGMEIIEIEYRRESPGWVLRVFVDQEGGVSVDDCARISRVVGDLLDVADIIH 83 Query: 70 VAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTV 129 Y+LEVSSPGL+RPL E +A+ VG+ + + + RR ++G++K V E I + Sbjct: 84 YPYHLEVSSPGLNRPLRKREQFAKVVGKVIEVKTLVPFGTRRNFKGILKEVGVERIRMDC 143 Query: 130 EGKDEVFALSNIQKANL 146 + + SN+ +A L Sbjct: 144 DNQLFEIPFSNMDRARL 160 >UniRef50_B8FCY3 Ribosome maturation factor rimP n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=RIMP_DESAA Length = 152 Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 54/142 (38%), Positives = 78/142 (54%), Gaps = 1/142 (0%) Query: 6 QKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDV 64 +++ ++ A +EA G +LV EF R G LR+Y+D E GI + DC VS V +LD Sbjct: 2 EQVRKLTGAALEAEGMDLVLAEFKREGGGYILRLYVDKEGGITLGDCTMVSRYVGDLLDA 61 Query: 65 EDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEM 124 Y LEVSSPGLDRPL +H+ RF G +V + + R+K++GV+ + Sbjct: 62 YADEMPRYRLEVSSPGLDRPLTREDHFRRFEGRTALIVTKEPREGRKKFRGVLSGALNGV 121 Query: 125 ITVTVEGKDEVFALSNIQKANL 146 IT+ + FAL I+ A L Sbjct: 122 ITLVADEVPMEFALHEIESARL 143 >UniRef50_Q47D92 Ribosome maturation factor rimP n=2 Tax=Betaproteobacteria RepID=RIMP_DECAR Length = 146 Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 56/148 (37%), Positives = 89/148 (60%), Gaps = 10/148 (6%) Query: 8 LTEMITAPVEALGFELVGIEFI-RGRTSTLRIYIDS---EDGINVDDCADVSHQVSAVLD 63 L ++ V LG+ELV +E RGRT +R++ID+ E GI+V+DCA VS+Q++ V + Sbjct: 3 LNTLLETTVVGLGYELVDVEMSPRGRT--IRVFIDAPAKETGIDVEDCAKVSNQLTRVFE 60 Query: 64 VEDPITVAYN-LEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 VE+ ++ LE+SSPGLDR + A + RF G+E+ + +R+ RR +QG + + Sbjct: 61 VEN---FDFDRLEISSPGLDRVVKKAADFERFSGQEIQIKVRIPQGGRRNFQGELLGLKD 117 Query: 123 EMITVTVEGKDEVFALSNIQKANLVPHF 150 + + + D +NI+KA LVP F Sbjct: 118 GKVGLRLAKDDVELEFTNIEKARLVPRF 145 >UniRef50_Q2LWU4 Ribosome maturation factor rimP n=1 Tax=Syntrophus aciditrophicus SB RepID=RIMP_SYNAS Length = 160 Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 58/156 (37%), Positives = 89/156 (57%), Gaps = 7/156 (4%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGRTSTL-RIYIDSEDGINVDDCADVSHQVS 59 + L + + ++ + + G ELV +E +R +T L RIY+D E G+ +DDC+++S+Q+ Sbjct: 6 VKKLREDIWQLAEPVIASEGLELVEVECLRMKTRWLVRIYMDREGGVTLDDCSEISNQLG 65 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 VLDV D Y LEVSSPGLDRPL + + R+ G EV++ L V R ++G + Sbjct: 66 DVLDVHDLPPDPYTLEVSSPGLDRPLVRDKDFVRYQGCEVSIRLEQKVDGIRNFRGRLLE 125 Query: 120 V---DGEMITVTVEGKDEVFALSN--IQKANLVPHF 150 DG I V +E +++ + I KANLV F Sbjct: 126 YVEEDGRKILV-IEMASKLYRIPRDLIVKANLVYRF 160 >UniRef50_A6T0Z0 Ribosome maturation factor rimP n=7 Tax=Betaproteobacteria RepID=RIMP_JANMA Length = 161 Score = 91.7 bits (226), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 60/156 (38%), Positives = 86/156 (55%), Gaps = 17/156 (10%) Query: 7 KLTEMITAPVEALGFELVGIEFIRGRTSTLRIYID--SEDG----INVDDCADVSHQVSA 60 +L+ +I V +G+ELV E + +R++ID ED I V+DC V+HQ+ Sbjct: 2 QLSALIEKTVVGMGYELVNFE--QAARGLVRVFIDFTPEDADKGAITVEDCEKVTHQLLH 59 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAV---QNRRKWQGVI 117 VL VE+ LEVSSPGLDRPL Y RF G E + LRM + NR+ +QG++ Sbjct: 60 VLTVEN--ANYERLEVSSPGLDRPLKKLSDYVRFAGAEALVKLRMPMPNAANRKSFQGIL 117 Query: 118 KAVDGEMITVTVEGKDEV----FALSNIQKANLVPH 149 + GE + + EG D F L+++ KA+LVP Sbjct: 118 QEPVGETLALEFEGNDGPAKLEFTLADVDKAHLVPQ 153 >UniRef50_B8GX01 Ribosome maturation factor rimP n=4 Tax=Caulobacteraceae RepID=RIMP_CAUCN Length = 191 Score = 91.3 bits (225), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 55/155 (35%), Positives = 88/155 (56%), Gaps = 13/155 (8%) Query: 5 EQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSE-----DG----INVDDCADVS 55 ++ L EM+ E+LG+E+V + + G T R+ I +E DG +NV+DCA +S Sbjct: 8 DRDLIEMLDPVAESLGYEIVRLRLMGG-TEQRRLQIMAEHPLLEDGSGGDMNVEDCAKLS 66 Query: 56 HQVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQG 115 VS VLD DPI Y LEVSSPG+DRPL + + + G E + L + R++++G Sbjct: 67 RAVSEVLDAADPIAGEYTLEVSSPGIDRPLTRLKDFDDYAGLEARIELDRVAEGRKRFKG 126 Query: 116 VIKAVDGEMITVTVEGKDEV---FALSNIQKANLV 147 + V+ + + + +EG+D+V F + + A LV Sbjct: 127 ELAGVEDDQVGLNIEGEDDVTVYFPFAWVIDAKLV 161 >UniRef50_A5FV18 Ribosome maturation factor rimP n=2 Tax=Acetobacteraceae RepID=RIMP_ACICJ Length = 201 Score = 91.3 bits (225), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 87/148 (58%), Gaps = 4/148 (2%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSED--GINVDDCADVSHQVSAV 61 LE ++ E+I +E++G+ELV + + +T T++I D D +++DDC +SH VSAV Sbjct: 38 LEGRIAELIAPGLESIGYELVRVAIMGKQTPTVQIMADRADQTPLSLDDCERISHLVSAV 97 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMA-VQNRRKWQGVIKAV 120 LDV+DPI+ A+ LEVSS G+DRPL + + R+ G + L + R++ G + Sbjct: 98 LDVDDPISSAWTLEVSSAGIDRPLTRVKDWNRYAGHLARIDLDVPTASGRKRLTGTVLGA 157 Query: 121 DGEMITVTVEGKDEV-FALSNIQKANLV 147 D V ++ + V ++I++A LV Sbjct: 158 DEAQARVKLDSGETVDLPHAHIRRAKLV 185 >UniRef50_A9G896 Ribosome maturation factor rimP n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=RIMP_SORC5 Length = 208 Score = 91.3 bits (225), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 64/144 (44%), Positives = 89/144 (61%), Gaps = 11/144 (7%) Query: 14 APVEAL-GFELVGIEFIRGRTS-TLRIYIDSED------GINVDDCADVSHQVSAVLDVE 65 APV A G LV +E+I R TLR+ I+ E+ G+ ++DCADVS VS+VLDVE Sbjct: 19 APVLASHGVTLVDLEWITERAGWTLRLTIERENADDAGGGVTLEDCADVSRDVSSVLDVE 78 Query: 66 DPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVL-RMAVQNRRKWQG-VIKAVDGE 123 D I YNLEVSSPGLDR L TA +ARF+G + L R A +R +G +++A +G+ Sbjct: 79 DLIPNHYNLEVSSPGLDRRLRTAAEFARFLGRTAKVKLARPAPDGQRLLRGELLEAPEGQ 138 Query: 124 MITVTVEGKDEVFALSNIQKANLV 147 + V V+GK +++ +A LV Sbjct: 139 -VAVLVDGKRIAVPFADVAEARLV 161 >UniRef50_C6XRW8 Putative uncharacterized protein n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XRW8_HIRBI Length = 203 Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 52/149 (34%), Positives = 87/149 (58%), Gaps = 2/149 (1%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVS 59 +S +E+++ ++I ++G E+V + + T L+I + DG ++V+DCA +S + Sbjct: 4 LSEIEKRILDIIEPEATSIGLEIVRVRMMGANTPILQIMAEKPDGTMDVEDCAKLSRAIG 63 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI-K 118 VLDVEDPI YNLEVSSPG+DRPL +A + EV + L + + RR++ G I Sbjct: 64 PVLDVEDPIHSEYNLEVSSPGIDRPLTREGDFANWKTYEVRIELGIPIDGRRRFHGTITD 123 Query: 119 AVDGEMITVTVEGKDEVFALSNIQKANLV 147 V+G + +G ++ ++ KA+LV Sbjct: 124 EVNGIVSLDLKDGSKAEISIVDMVKASLV 152 >UniRef50_B5YJX5 Ribosome maturation factor rimP n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=RIMP_THEYD Length = 164 Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 46/131 (35%), Positives = 76/131 (58%), Gaps = 1/131 (0%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIE-FIRGRTSTLRIYIDSEDGINVDDCADVSHQVS 59 + L+ K+T+ E G E+V +E + G+ TLRI+ID E G+ + DC + S + Sbjct: 3 IKELKDKITDYANIVGEQEGVEIVNVEIYPGGKGLTLRIFIDKEGGVTIKDCENFSRAIE 62 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 A+LDVEDPI +Y LEVSSPG+DRPL + + R +G +V + + + + + G I Sbjct: 63 AILDVEDPIKSSYTLEVSSPGIDRPLKNKKDFLRNIGRDVKITTKEKIADNTFFIGKIVD 122 Query: 120 VDGEMITVTVE 130 V + + + ++ Sbjct: 123 VGDDWVRIEIQ 133 >UniRef50_D1B0G8 Putative uncharacterized protein n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B0G8_SULD5 Length = 142 Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 50/137 (36%), Positives = 80/137 (58%), Gaps = 5/137 (3%) Query: 9 TEMITAPVEALGFELVGIEFIRG-RTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDP 67 TE + +E+ G L E + RIYI S++GIN+D CA+VS +S + DVE P Sbjct: 4 TEQLIKIIESCGVSLYDTEVVSEFDKKIFRIYITSKEGINLDKCAEVSRILSPIFDVEPP 63 Query: 68 ITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITV 127 + Y EVSSPG++R L EH++ VGE+V ++ ++N+ K+ G+++ + V Sbjct: 64 LEGEYLFEVSSPGIERKLLKPEHFSVSVGEKV----KIKLKNKEKFIGILEGFANNTLQV 119 Query: 128 TVEGKDEVFALSNIQKA 144 VE + + AL +I+KA Sbjct: 120 RVENEVKEIALDDIEKA 136 >UniRef50_A9VT54 Ribosome maturation factor rimP n=6 Tax=Bacillus RepID=RIMP_BACWK Length = 156 Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 48/129 (37%), Positives = 82/129 (63%), Gaps = 5/129 (3%) Query: 4 LEQKLTEMITA---P-VEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQV 58 +++K+TE++ A P VE L ELV +E+++ G+ LR++IDSE G+ +++C VS ++ Sbjct: 1 MDKKVTEIVEAFAQPIVEELNLELVDVEYVQEGQDWFLRVFIDSEKGVEIEECGAVSERL 60 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 S LD EDPI Y L+VSSPG +RPL + + + VG++V + + + ++G + Sbjct: 61 SEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYKPIDGEKMFEGKLL 120 Query: 119 AVDGEMITV 127 + DG IT+ Sbjct: 121 SYDGNTITL 129 >UniRef50_A9KNW8 Ribosome maturation factor rimP n=13 Tax=Clostridiales RepID=RIMP_CLOPH Length = 155 Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 57/148 (38%), Positives = 84/148 (56%), Gaps = 2/148 (1%) Query: 5 EQKLTEMITAPVEALGFELVGIEFIRGRTS-TLRIYIDSEDGINVDDCADVSHQVSAVLD 63 E K +++T +E FELV +E+++ + LR YID E GI VDDC VS + S +LD Sbjct: 8 ELKAEQLLTPIMEENNFELVDVEYVKEVGNWYLRAYIDKEGGITVDDCEVVSRRFSDLLD 67 Query: 64 VEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGE 123 +D I AY LEVSSPGL R L + + R +GEEV + L A+ ++ ++G++ D E Sbjct: 68 EKDFIPDAYILEVSSPGLGRQLKKDKDFKRSLGEEVEIKLYKAINKQKDFEGILTDFDQE 127 Query: 124 -MITVTVEGKDEVFALSNIQKANLVPHF 150 +I +G FA ++I L F Sbjct: 128 KLIIEQADGTTMEFARADIAMVRLALDF 155 >UniRef50_C3P5L9 Ribosome maturation factor rimP n=253 Tax=Firmicutes RepID=RIMP_BACAA Length = 156 Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 48/129 (37%), Positives = 83/129 (64%), Gaps = 5/129 (3%) Query: 4 LEQKLTEMITA---P-VEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQV 58 +++K+TE++ A P VE L ELV +E+++ G+ LR++IDSE G+++++C VS ++ Sbjct: 1 MDKKVTEVVEAFAQPIVEELNLELVDVEYVKEGQDWFLRVFIDSEKGVDIEECGAVSERL 60 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 S LD EDPI Y L+VSSPG +RPL + + + VG++V + + + ++G + Sbjct: 61 SEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYEPIDGEKMFEGKML 120 Query: 119 AVDGEMITV 127 + DG IT+ Sbjct: 121 SYDGTTITL 129 >UniRef50_B2A393 Ribosome maturation factor rimP n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=RIMP_NATTJ Length = 154 Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 50/143 (34%), Positives = 80/143 (55%), Gaps = 2/143 (1%) Query: 7 KLTEMITAPVEALGFELVGIEFI-RGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVE 65 ++ +I V LG++LV +E I + LR+YID GI +DDC VS+ + +LD Sbjct: 9 QIENIIEPAVRDLGYDLVDVELIMENQKWVLRVYIDHGKGIGLDDCELVSNSLDQLLDEH 68 Query: 66 DPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMI 125 DPI +Y LEVSSPG +RPL + + F G++V + + + R+ ++G + ++ E + Sbjct: 69 DPIPHSYVLEVSSPGAERPLKKKKDFVNFAGKKVQIKTYVKLDGRKNFKGKLLGLEDEHV 128 Query: 126 TVTVEGKDEV-FALSNIQKANLV 147 + EV L I KANL+ Sbjct: 129 VLETFNSGEVKIPLDKIAKANLL 151 >UniRef50_B9DPF1 Ribosome maturation factor rimP n=13 Tax=Bacillales RepID=RIMP_STACT Length = 155 Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 47/135 (34%), Positives = 82/135 (60%), Gaps = 1/135 (0%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVS 59 MS + +++ E+I ++ L FELV IEF + G+ LRI ID E G++++DC S ++S Sbjct: 1 MSKITEQIEEIIQPVLDDLNFELVEIEFTKEGKDHFLRISIDKEGGVDLNDCTLASEKIS 60 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 V++ EDPI Y L+V+SPG +RP+ T + V + V + L + ++W GV+++ Sbjct: 61 EVMNEEDPIEQMYYLDVASPGAERPIKTDKALHDAVEQPVFVSLYAPIDGSKEWLGVLQS 120 Query: 120 VDGEMITVTVEGKDE 134 V + I + + K++ Sbjct: 121 VTDDHIVIKAQVKEK 135 >UniRef50_A4SY80 Ribosome maturation factor rimP n=2 Tax=Polynucleobacter necessarius RepID=RIMP_POLSQ Length = 163 Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 62/155 (40%), Positives = 89/155 (57%), Gaps = 21/155 (13%) Query: 10 EMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG---INVDDCADVSHQVSAVLDVED 66 ++I A +E LG+ LV IE R LR+ I++ D I+V DC VSHQ+S L VE+ Sbjct: 5 QIIAAELENLGYTLVEIE--REAGGLLRVTIENPDYERLISVLDCEKVSHQLSYALPVEN 62 Query: 67 PITVAY-NLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA-VDGEM 124 + Y LE+SSPGLDRP+ +A + RF G EV L LR+A NR+ ++GV++ + GE+ Sbjct: 63 ---IPYERLEISSPGLDRPVKSAADFERFTGMEVDLKLRVAAGNRKNFRGVLQGLLSGEL 119 Query: 125 ------ITVTVEGKDEV-----FALSNIQKANLVP 148 + EG D F+L+ + K LVP Sbjct: 120 NSPDAKFGLLFEGADGAESQLEFSLAEVDKTRLVP 154 >UniRef50_Q2RMS3 Ribosome maturation factor rimP n=2 Tax=cellular organisms RepID=RIMP_RHORT Length = 225 Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 41/116 (35%), Positives = 71/116 (61%), Gaps = 2/116 (1%) Query: 8 LTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGI--NVDDCADVSHQVSAVLDVE 65 L +++ ++A+G+E+V + + + TL++ + DG+ V DC +S + A+LDVE Sbjct: 42 LEKLLAPTLDAMGYEVVRVTLLGSQNPTLQVMAERLDGVAMTVSDCETISRALGALLDVE 101 Query: 66 DPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 DPI Y+LE+SSPG+DRPL + YARF G E + ++ R+ +G++ +D Sbjct: 102 DPIAGRYSLEISSPGIDRPLTRPKDYARFAGHEARIETDRLIEGHRRMKGLLLGID 157 >UniRef50_B8CW69 Ribosome maturation factor rimP n=1 Tax=Halothermothrix orenii H 168 RepID=RIMP_HALOH Length = 159 Score = 88.6 bits (218), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 52/154 (33%), Positives = 86/154 (55%), Gaps = 4/154 (2%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDG-INVDDCADVSHQV 58 M + ++ ++ VE+ G ELV +E+++ G LR++I++ +G + +D C +VS + Sbjct: 1 MGKITDRVEDLAQPIVESQGLELVDVEYVKEGENRVLRVFIENPEGEVTLDHCENVSKNL 60 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 LD DPI +Y LEVSSPG++RPL E + RF G+ + V ++ G+IK Sbjct: 61 DEKLDEVDPIQESYILEVSSPGIERPLKKKEDFDRFSGKLAYIKTFAPVSGNKEITGIIK 120 Query: 119 AVDGEMITVTVEGKDEVFAL--SNIQKANLVPHF 150 DG+ I V + D+ + S I KA+L+ F Sbjct: 121 GRDGDNIKVLKKDDDKELEIPFSQIAKAHLMVDF 154 >UniRef50_B0T164 Ribosome maturation factor rimP n=6 Tax=Alphaproteobacteria RepID=RIMP_CAUSK Length = 199 Score = 88.6 bits (218), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 50/145 (34%), Positives = 83/145 (57%), Gaps = 5/145 (3%) Query: 8 LTEMITAPVEALGFELVGIEFIRG-RTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVE 65 L E++ E++G+E+V + + G L+I + DG +NV+DCA +S +S +LD Sbjct: 11 LVELLDPVAESVGYEIVRLRLMGGAEQRRLQIMAERPDGDMNVEDCAKLSRAISEILDAA 70 Query: 66 DPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMI 125 DPI+ Y LEVSSPG+DRPL + + + G EV + L + R++++G + V+ + Sbjct: 71 DPISGEYTLEVSSPGVDRPLTRLKDFETYAGLEVRIELDRVAEGRKRFKGELAGVEDGQV 130 Query: 126 TVTVEGKDEV---FALSNIQKANLV 147 + +EG+D+ F I A LV Sbjct: 131 GLNLEGEDDTTVYFPFEWIVDAKLV 155 >UniRef50_C1TMK4 Uncharacterized conserved protein n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TMK4_9BACT Length = 181 Score = 88.2 bits (217), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 52/134 (38%), Positives = 81/134 (60%), Gaps = 7/134 (5%) Query: 9 TEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDV--E 65 E I VE+LG+E +G+E + S +R+Y+DS GI+V DC VS +++ L+ E Sbjct: 8 KEEIREIVESLGYEFIGLEVKKESAASFVRVYMDSLGGISVRDCEIVSRRINNWLEESGE 67 Query: 66 DPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK-AVDGEM 124 D + Y LEVSSPGL+RPLF+ + + RF G+E ++ L V+ RR+ G++ + DG Sbjct: 68 DLLDDRYYLEVSSPGLERPLFSLDDFRRFSGKEASIRLNELVEGRRRINGIVSVSQDG-- 125 Query: 125 ITVTVEGKDEVFAL 138 ++ VE +D F Sbjct: 126 -SIRVENQDGAFEF 138 >UniRef50_A7H9F0 Ribosome maturation factor rimP n=5 Tax=Myxococcaceae RepID=RIMP_ANADF Length = 171 Score = 88.2 bits (217), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 54/147 (36%), Positives = 77/147 (52%), Gaps = 9/147 (6%) Query: 9 TEMITAPVEAL-GFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVED 66 T + PV A G+ELV +E++R G TLR+++D G+ ++DC VS V +LDVED Sbjct: 13 TRRVLEPVLARDGYELVEVEWLRQGSRWTLRLFVDKPGGVGIEDCQAVSRLVDPILDVED 72 Query: 67 PITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQN-------RRKWQGVIKA 119 I AY+LEVSSPGLDRPL + R+ G+ + V R+ W GV+ Sbjct: 73 FIEPAYDLEVSSPGLDRPLRKPADFDRYAGQRAHVKAYGPVAGTAPGSPARKNWTGVLVG 132 Query: 120 VDGEMITVTVEGKDEVFALSNIQKANL 146 + + V+G I KA+L Sbjct: 133 YRDGAVEIDVDGVVHRVPHDQIAKAHL 159 >UniRef50_Q1IIT1 Ribosome maturation factor rimP n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=RIMP_ACIBL Length = 169 Score = 88.2 bits (217), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 89/166 (53%), Gaps = 22/166 (13%) Query: 6 QKLTEMITAPVEALGFELVGIEFIRG-RTSTLRIYIDSEDGINVDDCADVSHQVSAVLDV 64 +K+ E++ G E+V +EF G + LRI ID +G+ DDC+ VS++VS +LDV Sbjct: 5 EKVREIVERVARDYGLEVVEVEFRGGGKARMLRITIDKPEGVTHDDCSHVSNEVSTILDV 64 Query: 65 EDPITVA-YNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA-VDG 122 ED + A Y LEVSSPGLDR + + RF G V + R + R ++G +++ DG Sbjct: 65 EDVVPGASYTLEVSSPGLDRKISKPADFERFTGSLVKVSTREPLDGNRHFEGRLESFADG 124 Query: 123 EMI------------------TVTVEGKDEVFALSNIQKANLVPHF 150 ++ VE K E+ AL++++KANLVP Sbjct: 125 KLTIDLNAVPQRGQKKQKGPKAPVVERKVEI-ALADVEKANLVPEI 169 >UniRef50_Q0C5Z8 Ribosome maturation factor rimP n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=RIMP_HYPNA Length = 199 Score = 88.2 bits (217), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 49/150 (32%), Positives = 84/150 (56%), Gaps = 3/150 (2%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG--INVDDCADVSHQV 58 ++ E++L ++ E LG E+V + GR L+I + G ++DCA +S + Sbjct: 4 LTEQERRLLSLVQPVAEGLGMEIVRLRVQGGRRPHLQIMAERAGGAPTGIEDCARLSRGM 63 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 S VL+ DPI+ AY LEVS+PG+DRPL +AR++G V + L + RR++ G I Sbjct: 64 SPVLEAADPISEAYTLEVSTPGIDRPLTRPGDFARWIGHAVRIELARPIDGRRRFTGTIT 123 Query: 119 AVDGEMITVTVEGKDE-VFALSNIQKANLV 147 D + + ++ + + V A+ + +A+LV Sbjct: 124 GEDNDGAHIELDDETKLVAAVHEMSRASLV 153 >UniRef50_Q01W33 Ribosome maturation factor rimP n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=RIMP_SOLUE Length = 153 Score = 87.8 bits (216), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 50/142 (35%), Positives = 75/142 (52%), Gaps = 2/142 (1%) Query: 7 KLTEMITAPVEALGFELVGIEFIRGRTSTL-RIYIDSEDGINVDDCADVSHQVSAVLDVE 65 K+ E+ ++ G ELV +E G ++ L RI ID +G+ DC VS +V +L+ E Sbjct: 8 KVEEVAQRVAQSEGLELVEVEVKGGGSARLVRISIDKPEGVTHADCQTVSDKVGEILEAE 67 Query: 66 DPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA-VDGEM 124 D I Y LEVSSPG++R L + Y RF G++ + +R V RR W+G + DG + Sbjct: 68 DAIPGHYTLEVSSPGVERKLLKPQDYQRFHGQKAKITVREEVDGRRTWEGTLAGFADGVI 127 Query: 125 ITVTVEGKDEVFALSNIQKANL 146 G+ ++KANL Sbjct: 128 SLEVAPGEIRRLPFDQVKKANL 149 >UniRef50_C0W7C6 YhbC family protein n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W7C6_9ACTO Length = 154 Score = 87.8 bits (216), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 53/149 (35%), Positives = 84/149 (56%), Gaps = 9/149 (6%) Query: 6 QKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDG---INVDDCADVSHQVSAV 61 ++LTE++T VE G L G+E R GR ST+R+ +D DG +++D A+V+ VS Sbjct: 11 ERLTELLTPVVEQAGLFLEGVETTRAGRYSTVRVIVDLPDGPGDLDLDAVAEVTQTVSDA 70 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 LD DP+ Y LEV+SPG +R L T + R G + L V + G +++ D Sbjct: 71 LDEADPVKGQYTLEVTSPGAERELTTPRTFRRATGHQARL-----VTAGQTLTGTVRSAD 125 Query: 122 GEMITVTVEGKDEVFALSNIQKANLVPHF 150 E +TV V+G ++ A +++ +A +V F Sbjct: 126 EETVTVEVDGSEQTIAYTDLLEARMVVVF 154 >UniRef50_Q67P90 Ribosome maturation factor rimP n=2 Tax=Clostridiales RepID=RIMP_SYMTH Length = 160 Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 57/145 (39%), Positives = 78/145 (53%), Gaps = 5/145 (3%) Query: 6 QKLTEMITAP-VEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLD 63 ++L E + AP ALG ELVG+E ++ G LR+YID E G+ DDC +S V A LD Sbjct: 9 EELVEELAAPHAAALGLELVGVELVKEGAYRYLRVYIDKEGGVGFDDCEALSRVVDAQLD 68 Query: 64 VEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA-VDG 122 P EVSSPGLDRPL +AR+VG +V + V ++ + G ++ VDG Sbjct: 69 EILPNPPYDFFEVSSPGLDRPLKREADFARYVGHKVVVTTYAPVDGQKSFVGELQGLVDG 128 Query: 123 EMITVTVEGK--DEVFALSNIQKAN 145 + EGK + AL Q A+ Sbjct: 129 RVTLTLTEGKGRGQTIALDRKQVAS 153 >UniRef50_B1I359 Ribosome maturation factor rimP n=4 Tax=Clostridiales RepID=RIMP_DESAP Length = 154 Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 55/152 (36%), Positives = 81/152 (53%), Gaps = 4/152 (2%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFI-RGRTSTLRIYIDSEDGINVDDCADVSHQVSA 60 S + ++ EM E G ELV ++++ G LR+++D GIN+DDC VS ++ Sbjct: 4 SDIAGRVEEMARPLAERKGLELVEVQYVTEGGRRYLRVFLDKPGGINLDDCEAVSRELDR 63 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 LD D I +Y LEVSSPGL+RPL AE Y RF G V + + R+K+ G + Sbjct: 64 ALDDVDFIPHSYVLEVSSPGLERPLKRAEDYVRFKGRLVQINTYAPLNGRKKFSGRLMGS 123 Query: 121 DGEMITVTVEGKDEVFAL--SNIQKANLVPHF 150 E +T+ + G+ E+ + I KA L F Sbjct: 124 GEEGVTILL-GEHELATIPWDQISKARLAVEF 154 >UniRef50_C9LLP6 Putative uncharacterized protein n=1 Tax=Dialister invisus DSM 15470 RepID=C9LLP6_9FIRM Length = 156 Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 40/100 (40%), Positives = 64/100 (64%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLD 63 +E + ++ ++ LG EL+ +E++R R LR++ID EDG++++DC +S + +LD Sbjct: 6 IELEAERLLEPALKQLGIELIDVEYVRERNWILRVFIDKEDGVDLNDCQQISEKAGELLD 65 Query: 64 VEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVL 103 D I+ Y LEVSSPGLDR L + + R+ GEEV + L Sbjct: 66 EADLISANYMLEVSSPGLDRVLKKDKDFLRYAGEEVDVKL 105 >UniRef50_A5CEN4 Ribosome maturation factor rimP n=2 Tax=Orientia tsutsugamushi RepID=RIMP_ORITB Length = 160 Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 53/148 (35%), Positives = 85/148 (57%), Gaps = 6/148 (4%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYID--SEDGINVDDCADVSHQVSAV 61 L K+ E+IT + LG++++ + FI + + L+I ID E +NV DC S +SAV Sbjct: 2 LNDKIKELITPTAKTLGYKVINVSFIV-KPAILKIVIDRFDEKKVNVLDCQVFSKAISAV 60 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 LDVE+ I Y LEV S G++R L E + +F+G + + L A+ +K+ GVI + Sbjct: 61 LDVENIIPGKYFLEVESAGIERSLMDLEDFIKFLGYTIQVKLVAAINENKKYIGVISNIK 120 Query: 122 GEMITVTVEGKDEVFAL--SNIQKANLV 147 G+ IT+ ++ D A+ NI+ A +V Sbjct: 121 GQEITLNLQN-DSTIAIDYDNIKVAKIV 147 >UniRef50_D1VSB6 Putative uncharacterized protein n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSB6_9FIRM Length = 153 Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 82/150 (54%), Gaps = 1/150 (0%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRG-RTSTLRIYIDSEDGINVDDCADVSHQVSA 60 + + ++ ++ E LG+E+V IE+ +G + L I+I ++GI++DDC +SH + Sbjct: 4 KSFKNQIFKIAQVSAEELGYEIVDIEYQKGNKHDLLSIFIFKKEGIDLDDCTMMSHNIEK 63 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 LD + ++ Y LE+SSPGLDRP+ T + Y R + EV + L ++++ G++K Sbjct: 64 NLDNLEILSRPYYLEISSPGLDRPIKTKDDYRRNLENEVEVKLYGPYNGKKEYVGILKDY 123 Query: 121 DGEMITVTVEGKDEVFALSNIQKANLVPHF 150 + + + VE + + NI V F Sbjct: 124 NEHNVIICVENDNIEIPIKNISSMKQVIRF 153 >UniRef50_D2LJ62 Putative uncharacterized protein n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LJ62_RHOVA Length = 221 Score = 85.5 bits (210), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 45/120 (37%), Positives = 72/120 (60%), Gaps = 2/120 (1%) Query: 8 LTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVED 66 L +I +E +GF LV + + +T++I D DG INVDDCA +S ++S +LD D Sbjct: 32 LAALIEPVLEDMGFRLVRVTMSKRDGATIQIMADKADGAINVDDCAQISRRISPLLDAHD 91 Query: 67 PITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV-DGEMI 125 PI Y LEVSSPG+DR L + + G E + L+ + R++++G+++ +GEM+ Sbjct: 92 PIKDRYYLEVSSPGIDRILVRPSDFEDWAGFETKVELKELIDGRKRFRGILEGYENGEML 151 >UniRef50_B2IIK0 Ribosome maturation factor rimP n=19 Tax=Alphaproteobacteria RepID=RIMP_BEII9 Length = 314 Score = 85.1 bits (209), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 44/113 (38%), Positives = 72/113 (63%), Gaps = 2/113 (1%) Query: 11 MITAPVEA-LGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVEDPI 68 ++ APV A LG LV ++ +T++I + DG ++V+ C VS +S VLDVEDP+ Sbjct: 42 VLAAPVLADLGLRLVRVKISGQNGTTVQIMAERPDGTMDVEACESVSEALSPVLDVEDPV 101 Query: 69 TVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 AY+LE+SSPG+DRPL + R +G+EV + L+ + R++++G I ++ Sbjct: 102 KQAYHLEISSPGIDRPLVRLSDFERALGQEVRVELKTGLAGRKRFRGTIGPIE 154 >UniRef50_A6GNL5 Putative uncharacterized protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GNL5_9BURK Length = 171 Score = 85.1 bits (209), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 53/145 (36%), Positives = 86/145 (59%), Gaps = 13/145 (8%) Query: 14 APVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPITVAY- 72 A + +LG E+ IE R LRI IDS G+ V+DC VSHQ++ + VE+ V Y Sbjct: 30 AVISSLGLEVADIE--REGNGLLRIMIDSPTGVTVEDCEKVSHQLTHLFTVEN---VNYE 84 Query: 73 NLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEM--ITVTVE 130 LE+SSPG+DR L + + RF+ +EV+L + A+ N+++++GV++ + + VT + Sbjct: 85 RLEISSPGVDRVLRRKKDFERFLDQEVSLKFKRAINNQKQFKGVLQKGKEQAWGVLVTPD 144 Query: 131 GKDEV-----FALSNIQKANLVPHF 150 GK+ F ++++ A LVPH Sbjct: 145 GKNAEPYLLDFEITDLAGARLVPHL 169 >UniRef50_Q5HX28 Ribosome maturation factor rimP n=18 Tax=Campylobacter RepID=RIMP_CAMJR Length = 140 Score = 85.1 bits (209), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 45/110 (40%), Positives = 70/110 (63%), Gaps = 6/110 (5%) Query: 37 RIYIDSEDGINVDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVG 96 RIY+ E G+N+DDCA +S +S + DVE P+ Y LEVSSPGL+R L EH+A+ +G Sbjct: 29 RIYVQKEGGVNLDDCARLSEILSPIFDVESPVNGEYFLEVSSPGLERKLSKIEHFAKSIG 88 Query: 97 EEVTLVLRMAVQNRRKWQGVIKAVDGEMITV-TVEGKDE-VFALSNIQKA 144 E ++++ + K++ I AVD E IT+ +E K++ ++I+KA Sbjct: 89 E----LVKITTNEKEKFEAKIIAVDDENITLENLENKEKTTINFNDIKKA 134 >UniRef50_C7I1W8 Putative uncharacterized protein n=1 Tax=Thiomonas intermedia K12 RepID=C7I1W8_THIIN Length = 191 Score = 84.7 bits (208), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 52/113 (46%), Positives = 71/113 (62%), Gaps = 10/113 (8%) Query: 9 TEMITAPVEALGFELVGIEFI-RGRTSTLRIYIDSEDG--INVDDCADVSHQVSAVLDVE 65 + I V +LG ELV +E + RG LR+ ID DG + V+DC V+ Q+ V +VE Sbjct: 4 AQAIDTAVTSLGLELVEVEHLPRG---LLRVTIDHADGAPVTVEDCERVTRQLQYVFEVE 60 Query: 66 DPITVAYN-LEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI 117 + V Y LEVSSPGLDRPL AE + RF G E+ +VLR+ Q R+K++GV+ Sbjct: 61 N---VDYGRLEVSSPGLDRPLRKAEDFVRFAGLEIDVVLRVPFQGRKKYRGVL 110 >UniRef50_A8IG16 Ribosome maturation factor rimP n=3 Tax=Rhizobiales RepID=RIMP_AZOC5 Length = 291 Score = 84.7 bits (208), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 44/127 (34%), Positives = 71/127 (55%), Gaps = 1/127 (0%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSA 60 S + ++ ++T + L LV ++ T +I + DG + +DDC S +S Sbjct: 19 SGVAARIAAIVTPVLADLNLRLVRVKVTARDGGTCQIMAERPDGSMTIDDCEAASRAISP 78 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 VLDVEDPIT AY LE+SSPG+DRPL + R+ G EV + + + V R++++G++ Sbjct: 79 VLDVEDPITGAYRLEISSPGIDRPLVRLTDFDRWAGHEVKVEMAVPVDGRKRFRGILIGT 138 Query: 121 DGEMITV 127 E+ V Sbjct: 139 RAELAVV 145 >UniRef50_C1SH19 Uncharacterized conserved protein n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SH19_9BACT Length = 169 Score = 84.7 bits (208), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 48/120 (40%), Positives = 70/120 (58%), Gaps = 5/120 (4%) Query: 36 LRIYIDSEDGINVDDCADVSHQVSAVLDVEDPITV--AYNLEVSSPGLDRPLFTAEHYAR 93 LRI ID E G ++DC + S +SA LD ED I Y+LEVS+PGL+RPL + + + R Sbjct: 50 LRITIDKETGPGIEDCTEASRAISAFLDGEDNIVPLDKYHLEVSTPGLERPLRSQQDFVR 109 Query: 94 FVGEEVTLV-LRMAVQNRRKWQGVIKAVDGEMITVTVEGKDEVF--ALSNIQKANLVPHF 150 G++ ++ + R+ + G I +VD +T+ VE + F +L NI KANLV F Sbjct: 110 QTGKKCKIITVNKDESGRKSYTGKIDSVDDSKVTLYVEKESAAFEISLDNISKANLVVEF 169 >UniRef50_A5VCZ9 Ribosome maturation factor rimP n=8 Tax=Sphingomonadales RepID=RIMP_SPHWW Length = 186 Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 52/144 (36%), Positives = 81/144 (56%), Gaps = 4/144 (2%) Query: 8 LTEMITAPVEALGFELVGIEFIRGRTS-TLRIYIDSEDGINVD--DCADVSHQVSAVLDV 64 LT++I +ALG +LV + F G++ TL++ + D +D DC +S ++S D Sbjct: 7 LTKLIEPEAKALGLDLVRVAFFGGKSDPTLQVMAERPDTRQLDIADCEALSRRISDKFDE 66 Query: 65 EDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEM 124 DPI AY LEVSSPG+DRPL + +A + G + + L + R+++ G I A DG+ Sbjct: 67 LDPIEDAYRLEVSSPGIDRPLTRVKDWADWSGFDARVKLAAPLDGRKQFDGRIVASDGDS 126 Query: 125 ITVTVEGKDEV-FALSNIQKANLV 147 +T+ V EV L+ I A L+ Sbjct: 127 VTLGVNKLGEVTVPLAQIASAKLI 150 >UniRef50_Q11BD1 Ribosome maturation factor rimP n=6 Tax=Rhizobiales RepID=RIMP_MESSB Length = 220 Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 48/118 (40%), Positives = 67/118 (56%), Gaps = 2/118 (1%) Query: 12 ITAPV-EALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVEDPIT 69 I PV +ALG+ LV + TL+I + DG + VDDC +VS VS LDVEDPI Sbjct: 19 IVMPVLDALGYRLVRVRLSAQDGLTLQIMAERPDGTMTVDDCEEVSRAVSPALDVEDPID 78 Query: 70 VAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITV 127 AY LE+SSPG+DRPL + +G + + V R++++G I GE +T+ Sbjct: 79 SAYQLEISSPGIDRPLVRLSDFQAALGHLAKVETSVMVDGRKRFRGQIVGCTGETLTI 136 >UniRef50_C5NYH1 Putative uncharacterized protein n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NYH1_9BACL Length = 154 Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/155 (36%), Positives = 82/155 (52%), Gaps = 6/155 (3%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVS 59 MS +E K+ + T E F L +E+++ G LRIY D + G+ +DDC +S +++ Sbjct: 1 MSIVE-KVKAIATKQAENTEFSLYDVEYVKEGTEYFLRIYFDKDGGLTLDDCVLLSEKLA 59 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 LD ED I+ Y LEVSSPG++R L E VG+ V + + N++++ G I A Sbjct: 60 EELDKEDFISDKYYLEVSSPGIERDLRDLEEVTNSVGKHVYIKTYEKIDNQKEFYGDILA 119 Query: 120 VDGEMITVTVEGKDEV----FALSNIQKANLVPHF 150 V+GE ITV + K V S I K L F Sbjct: 120 VEGEEITVEYKDKARVKKSTINYSKIAKIRLAVKF 154 >UniRef50_Q07V75 Ribosome maturation factor rimP n=14 Tax=Bradyrhizobiaceae RepID=RIMP_RHOP5 Length = 272 Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 41/117 (35%), Positives = 70/117 (59%), Gaps = 1/117 (0%) Query: 16 VEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVEDPITVAYNL 74 + +G+ LV I+ T++I + DG + ++DC +S +S VLDV DPI AY L Sbjct: 49 LHGMGYRLVRIKVSGELGCTVQIMAERPDGTMLIEDCEAISKALSPVLDVADPIDKAYRL 108 Query: 75 EVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTVEG 131 EVSSPG+DRPL + R+ G V + + + Q R++++G++ ++G+ + + EG Sbjct: 109 EVSSPGIDRPLVRRSDFERYAGYLVKIDMAVPHQGRKRFRGILGGIEGDAVHLQREG 165 >UniRef50_Q7MQU0 Ribosome maturation factor rimP n=1 Tax=Wolinella succinogenes RepID=RIMP_WOLSU Length = 142 Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 52/137 (37%), Positives = 79/137 (57%), Gaps = 8/137 (5%) Query: 10 EMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPI 68 E I V++ G L + ++ S LR+YI E G+++DDCA VS +S +LDVEDP+ Sbjct: 8 EKIEKLVQSCGCNLYDLLLLKENERSILRLYITKEVGVSLDDCAMVSDLISPLLDVEDPL 67 Query: 69 TVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVT 128 Y LEVSSPG++RPL HY +GE + R+ ++ + +G I+A D +V Sbjct: 68 AGEYFLEVSSPGIERPLKRPAHYQHALGE----LARIKFADKNEIEGEIEAAD--ETSVK 121 Query: 129 VEGKDEVFALSNIQKAN 145 ++G +E S I+KA Sbjct: 122 LKG-EEPIPYSLIKKAQ 137 >UniRef50_UPI0001C373AC hypothetical protein RflaF_02144 n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C373AC Length = 157 Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 49/148 (33%), Positives = 80/148 (54%), Gaps = 2/148 (1%) Query: 5 EQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLD 63 EQK+ ++I + LG+ L + +++ G LRI+ID ++GI++DDC + +S +LD Sbjct: 10 EQKVYDLIKPITDELGYYLWDVCYVKEGAMWYLRIFIDQDEGISIDDCERATAPISDILD 69 Query: 64 VEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGE 123 DP+ Y LEV S GL+R L EH+ G+ VTL AV ++ + + D + Sbjct: 70 EADPVPQQYMLEVGSAGLERELVKEEHFEVCKGDTVTLKFFRAVDGEKEIRAELVGADKD 129 Query: 124 MITVTVE-GKDEVFALSNIQKANLVPHF 150 ITV E G ++ L+++ L F Sbjct: 130 GITVIKEDGTEKTIPLADVSVVKLWLDF 157 >UniRef50_A6WWW8 Ribosome maturation factor rimP n=37 Tax=Rhizobiales RepID=RIMP_OCHA4 Length = 224 Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 46/125 (36%), Positives = 70/125 (56%), Gaps = 1/125 (0%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVL 62 ++ K+ +I + LGF LV + TL+I + DG + VDDC VS V+ VL Sbjct: 27 IDAKVASIIEPVINTLGFRLVRVRLSGLNGQTLQIMAERPDGTMTVDDCELVSRTVAPVL 86 Query: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 DVEDPI+ Y+LE+SSPG+DRPL +A + G + + + R+K++G I D Sbjct: 87 DVEDPISGKYHLEISSPGIDRPLVRKSDFADWAGHIAKVETSVVHEGRKKFRGRIVLGDA 146 Query: 123 EMITV 127 E + + Sbjct: 147 ESVVI 151 >UniRef50_B2KC93 Ribosome maturation factor rimP n=1 Tax=Elusimicrobium minutum Pei191 RepID=RIMP_ELUMP Length = 152 Score = 81.6 bits (200), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 66/119 (55%) Query: 30 RGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAE 89 +G + ++D E GIN+DD S + +++++E+ I AY LE SSPG+ R L E Sbjct: 30 QGSKKLFQFFVDKEGGINLDDVEKASRLIDSIIEMENLIEGAYILEASSPGIKRVLKKPE 89 Query: 90 HYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTVEGKDEVFALSNIQKANLVP 148 H+ +F+G+ + L+ ++NR + G+I + +T+ F +I+KANL P Sbjct: 90 HFKKFIGQRAKITLKQMIENRANFTGLIAGANETEMTLDDGTTQFKFKYEDIKKANLDP 148 >UniRef50_D0XR54 Putative uncharacterized protein n=1 Tax=Brevundimonas subvibrioides ATCC 15264 RepID=D0XR54_9CAUL Length = 232 Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 44/137 (32%), Positives = 79/137 (57%), Gaps = 9/137 (6%) Query: 5 EQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYID------SEDGINVDDCADVSHQV 58 ++++ E+I +++G +V + + G TLR + S++ I+V +CA +S + Sbjct: 43 DREILELIDPVADSIGLSIVRVRLMGG---TLRRRLQVMAERPSDNDIDVGECARLSRAM 99 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 S VLD DPI Y LEVSSPG+DRPL + + F G E L ++ R++++G++ Sbjct: 100 SEVLDAADPIAGEYLLEVSSPGIDRPLTRLKDFDLFEGLEARLESDRMIEGRKRFKGILA 159 Query: 119 AVDGEMITVTVEGKDEV 135 DG+ I + ++G+D+ Sbjct: 160 GTDGDNIAIDLDGEDDT 176 >UniRef50_Q2NC14 Ribosome maturation factor rimP n=2 Tax=Erythrobacter RepID=RIMP_ERYLH Length = 188 Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/153 (34%), Positives = 81/153 (52%), Gaps = 12/153 (7%) Query: 7 KLTEMITAPVEALGFELVGIEFIRGRTST--LRIYIDSEDGIN----VDDCADVSHQVSA 60 +LT +I +ALGFELV ++ + + I +ED ++ CA++S +VS Sbjct: 6 RLTALIEPEAKALGFELVRVKMMPSEAGDGGQALQIMAEDPATGQLLIEQCAELSRKVSD 65 Query: 61 VLDVEDP-----ITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQG 115 V+D + I AY+LEVSSPG+DRPL + +A + G E + L + R +G Sbjct: 66 VIDAAEESGEVLIEGAYHLEVSSPGIDRPLTRPKDFADWAGHEAKVSLVEKIDGHRNMRG 125 Query: 116 VIKAVDGEMITVTVEGKDEV-FALSNIQKANLV 147 ++ +DGE +T+ EV FAL I A LV Sbjct: 126 ILLGIDGETVTIADNRAGEVSFALEQIHSAKLV 158 >UniRef50_Q1J5B0 Ribosome maturation factor rimP n=71 Tax=Streptococcaceae RepID=RIMP_STRPF Length = 178 Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 47/123 (38%), Positives = 74/123 (60%), Gaps = 4/123 (3%) Query: 8 LTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDV-- 64 +T+ +T ++A +ELV +E+ + G L I +D E GI V+D +D+++ +S +LD Sbjct: 30 VTKTVTPEIKA-PYELVDVEYDKMGSDYILSILVDKEGGITVEDTSDLTNIISPLLDTID 88 Query: 65 EDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEM 124 DP Y LEVSSPGL+RPL TA+ VG + + L A+ + +QG + A DGE Sbjct: 89 PDPFPNQYMLEVSSPGLERPLKTADSLKAAVGSYINVSLYQAIDKVKVFQGDLLAFDGET 148 Query: 125 ITV 127 +T+ Sbjct: 149 LTI 151 >UniRef50_A8ST27 Putative uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8ST27_9FIRM Length = 129 Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 42/111 (37%), Positives = 67/111 (60%), Gaps = 1/111 (0%) Query: 26 IEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGLDRP 84 +E+++ G LR+Y D E GI ++DC V+ + +LD ED I+ AY LEVSSPGL RP Sbjct: 3 VEYVKEGSDYYLRVYADKEGGITINDCEIVNRALGDLLDQEDYISDAYILEVSSPGLTRP 62 Query: 85 LFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTVEGKDEV 135 L + R +G+ V + + + ++++GV+KA D +T+ E + EV Sbjct: 63 LKKENDFKRSIGKVVEIKTFVKINGAKEFEGVLKAYDDATVTIEFEDETEV 113 >UniRef50_C7HSS3 Putative uncharacterized protein n=1 Tax=Anaerococcus vaginalis ATCC 51170 RepID=C7HSS3_9FIRM Length = 152 Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 50/137 (36%), Positives = 72/137 (52%), Gaps = 5/137 (3%) Query: 7 KLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVE 65 KL E + + + LG+ELV IEF+ G+ LR +I + GI +DDC S+ +S LD Sbjct: 12 KLKENLESDINGLGYELVDIEFVNEGKNKILRFFIYKDGGITIDDCEKTSNFLSERLDEI 71 Query: 66 DPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMI 125 D I Y LEVSSP L RPL T R E +L + ++N K+ G IK + + Sbjct: 72 DLIKSFYYLEVSSPDLSRPLKTDRDLERNKDE----LLEIKLKNGEKFIGKIKEIKENSL 127 Query: 126 TVTVEGKDEVFALSNIQ 142 T+E + + S I+ Sbjct: 128 IFTLENEQKEIEKSEIK 144 >UniRef50_A8S8G3 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8S8G3_9FIRM Length = 161 Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 74/142 (52%), Gaps = 5/142 (3%) Query: 6 QKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDV 64 Q++ ++ VE +G L + F + G LRI ID + ++ D CA+VSH + +LD Sbjct: 11 QRVEALVRPTVEGMGLRLWDVVFEKEGPDWYLRILIDRDGTMDTDTCAEVSHALDPILDE 70 Query: 65 EDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEV-TLVLRMAVQNRRKWQGVIKAVDGE 123 DPI +Y LEV SPGL R L EHY G++V ++R R+ G++ +G Sbjct: 71 ADPIDQSYYLEVGSPGLGRKLTRPEHYEALKGQKVRAKLIRPNADGVRELSGILTGREGS 130 Query: 124 MITVTVEGKD---EVFALSNIQ 142 +T+ E EV A S +Q Sbjct: 131 TVTLETENGPVTFEVNAASGVQ 152 >UniRef50_B6BVK2 Putative uncharacterized protein n=1 Tax=beta proteobacterium KB13 RepID=B6BVK2_9PROT Length = 158 Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 51/143 (35%), Positives = 81/143 (56%), Gaps = 5/143 (3%) Query: 8 LTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDP 67 L ++I+ ++ +G+ELV E + +RI+ID+ + I+VDDC VS+ ++ VL VE Sbjct: 17 LEKIISESIQNIGYELVECEH-NHNSGLIRIFIDNGNLISVDDCVKVSNHLNRVLSVELD 75 Query: 68 ITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITV 127 + LEVSSPG+DR L Y RF GE++ + L + N++K+ G + A D + I + Sbjct: 76 YDFS-RLEVSSPGVDRKLIKLADYKRFEGEKIKIKLYSPINNQKKFDGKLIASDEKKIKI 134 Query: 128 TVEGKD--EVFALSNIQKANLVP 148 + + EV IQ A L P Sbjct: 135 LLSDEKILEV-PFDEIQMARLNP 156 >UniRef50_C9RKT2 Putative uncharacterized protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RKT2_FIBSS Length = 150 Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 48/130 (36%), Positives = 73/130 (56%), Gaps = 8/130 (6%) Query: 5 EQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLD 63 ++KL +I ++ LV + R G+ TLRI+ID +G+ +DDC +VSH +S LD Sbjct: 4 QEKLNSLIADACKSASVTLVEADVFRAGKRKTLRIFIDKPEGVTIDDCTNVSHFLSDALD 63 Query: 64 VEDP--ITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 + DP I AY LEVSSPG+DRPL + + R G +LR+ + G + D Sbjct: 64 L-DPELIEGAYTLEVSSPGIDRPLKSMADFERNKGR----LLRVTRSTGKPVTGELLNAD 118 Query: 122 GEMITVTVEG 131 E +T+ ++G Sbjct: 119 EENLTLKLKG 128 >UniRef50_C5F193 Putative uncharacterized protein n=2 Tax=Helicobacter RepID=C5F193_9HELI Length = 143 Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 47/143 (32%), Positives = 81/143 (56%), Gaps = 8/143 (5%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVL 62 + Q+L I VE+ G ++ I ++ LRI I + +++DDC +VS +S +L Sbjct: 3 ISQELQAKIQKLVESFGCKIYDITTLKENENQILRISITKKPSVSLDDCQEVSLALSPLL 62 Query: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 DVE P Y LEVSSPG++RPL T EH+ +GE ++++ +++ ++G + A+D Sbjct: 63 DVEIPNFEKYYLEVSSPGIERPLKTKEHFEDAIGE----LIKIKTISKQDFKGKLIAIDD 118 Query: 123 EMITVTVEGKDEVFALSNIQKAN 145 E + + E+ +S I+KA Sbjct: 119 ESLKLE---SGEIIPISEIKKAQ 138 >UniRef50_B8DN15 Ribosome maturation factor rimP n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=RIMP_DESVM Length = 226 Score = 78.6 bits (192), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 87/188 (46%), Gaps = 41/188 (21%) Query: 1 MST--LEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSE--------------- 43 MST L + + T +ALG L GIE I G LR+Y+D++ Sbjct: 1 MSTYPLRDAVAAIATPLADALGIALWGIEIIDGGRMVLRVYVDAKPGMPVPADTAEATES 60 Query: 44 -------------DGINVDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEH 90 +G+ +D CA +S Q+ LDVED + AY LEVSSPGL+RP F Sbjct: 61 ATPEGVALEGSTPEGVTIDQCARLSRQLGLALDVEDVVRDAYVLEVSSPGLERPFFEIAQ 120 Query: 91 YARFVGEEVTLVLRMA---VQNRRKWQGVIKAVDGEMITV---TVEGKDE-----VFALS 139 +VG + L L + RRK++ I V+G+ +T T DE A Sbjct: 121 VVPYVGRTIELTLAVPHPEWPGRRKFRADIVRVEGDTLTFLPDTAPRPDEDPAPISVAWD 180 Query: 140 NIQKANLV 147 +++KA+L+ Sbjct: 181 DVKKAHLI 188 >UniRef50_B0PH19 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PH19_9FIRM Length = 159 Score = 78.2 bits (191), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 42/125 (33%), Positives = 71/125 (56%), Gaps = 2/125 (1%) Query: 8 LTEMITAPV-EALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVE 65 + E + APV + +G L + F + G LR YID E G+ +D+C S +VS +LD Sbjct: 14 VCEALAAPVAQRMGLYLWDVAFEKEGAGWYLRYYIDREGGVTIDECEAFSREVSDLLDEA 73 Query: 66 DPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMI 125 DPI +Y LEV SPG++R L H+ +++G +V + L V+ R + G + + + ++ Sbjct: 74 DPIDQSYTLEVGSPGVERKLTKDWHFQKYIGAQVHVRLIRPVEGERDFVGALSSYENGVV 133 Query: 126 TVTVE 130 V ++ Sbjct: 134 AVLLD 138 >UniRef50_A8SMZ9 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SMZ9_9FIRM Length = 154 Score = 77.8 bits (190), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 73/123 (59%), Gaps = 1/123 (0%) Query: 20 GFELVGIEFIRG-RTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPITVAYNLEVSS 78 G V +E+++ + + LRI+ID + G+++D C S+ +S LD DPI +Y LEVSS Sbjct: 23 GIYFVNVEYVKEPKGNVLRIFIDKDGGVDLDSCEMTSNIISDWLDEVDPIEDSYFLEVSS 82 Query: 79 PGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTVEGKDEVFAL 138 PG++R + + E F+G++V + + N +++ G +K+ D E +T+ + +F+ Sbjct: 83 PGVEREIKSDEQLKTFIGKKVLVKCYKKINNEKEFIGYLKSFDREKLTLEIGKSSIIFSR 142 Query: 139 SNI 141 +I Sbjct: 143 KDI 145 >UniRef50_B1MZH7 Ribosome maturation factor rimP n=3 Tax=Leuconostoc RepID=RIMP_LEUCK Length = 158 Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 77/152 (50%), Gaps = 7/152 (4%) Query: 6 QKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDG--INVDDCADVSHQVSAVL 62 Q+++ +I + A L + + + G LRI ID + I +DD + V+ +L Sbjct: 7 QEISTLIEPLINAQQLLLWDVSYTKEGGQKVLRILIDKRNHEFITMDDITTFTQAVNELL 66 Query: 63 DV--EDPITVAYNLEVSSPGLDRPLFTAEHY--ARFVGEEVTLVLRMAVQNRRKWQGVIK 118 D DPI AY L++SSPG DRPL HY A+ GE + + +A ++KWQG I+ Sbjct: 67 DTIEPDPIPEAYMLDISSPGADRPLIRPWHYEWAKASGENILVAFFVAKNGQKKWQGKIE 126 Query: 119 AVDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 +D + IT+T + V I KA L F Sbjct: 127 TIDDKGITLTTSSETIVCTFDEIAKAVLDTQF 158 >UniRef50_C5CEP0 Putative uncharacterized protein n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CEP0_KOSOT Length = 167 Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 80/150 (53%), Gaps = 4/150 (2%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGRT-STLRIYIDSEDG-INVDDCADVSHQV 58 M L +KL ++ E LG+E+ + F +GR + L + ID EDG I++ DC + S Sbjct: 14 MYELTEKLRKLAEEVAEELGYEIYKLTFGKGRRRAVLTVAIDKEDGYISISDCENFSRAF 73 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 LD + I+ +YNL + SPG +R L + RF G+ V +VL+ ++NR G + Sbjct: 74 EKKLDETEIISSSYNLVIESPGAERELRKPGDFMRFTGKSVKIVLKEPLENRSVLVGQLI 133 Query: 119 AVDGEMITVTVEGKDEVFALSN--IQKANL 146 + +++T+ + F + I+KANL Sbjct: 134 NANEDLVTIIEADSNRTFEVEYRMIKKANL 163 >UniRef50_B6FZB3 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FZB3_9CLOT Length = 154 Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 76/129 (58%), Gaps = 1/129 (0%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSA 60 S + ++ +M+TA + G+E V +E+++ LR+ +D E GI++++C +VS ++S Sbjct: 4 SEIVDRVEKMVTAITDEKGYETVDVEYVKEAGQFYLRVVVDKEGGISLNECEEVSRELSP 63 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 LD D I Y LEVSSPG+DR L + + ++ G +V + L A+ ++++G + + Sbjct: 64 KLDENDFIEENYYLEVSSPGIDRALKRDKEFVKYKGRDVEIKLYKAIDGVKQFEGELVGL 123 Query: 121 DGEMITVTV 129 D E V + Sbjct: 124 DEENNIVVI 132 >UniRef50_A8ZZ67 Ribosome maturation factor rimP n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=RIMP_DESOH Length = 161 Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 48/145 (33%), Positives = 77/145 (53%), Gaps = 4/145 (2%) Query: 7 KLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDS---EDGINVDDCADVSHQVSAVL 62 ++ +++ A G ELV +EF + + LR+Y+ S + G+ ++DCA +S QV+ +L Sbjct: 10 QMWKLVEPVCSAEGMELVFVEFNKESQGRVLRLYLASGVPDRGVTLEDCAGISRQVNGLL 69 Query: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 DV P Y LEVSS GL+RPL + RF G V + V +R+ + G++ V Sbjct: 70 DVYLPELDNYTLEVSSAGLERPLAKEIDFERFAGSRVKIRTAAPVSDRKNFTGILLGVSD 129 Query: 123 EMITVTVEGKDEVFALSNIQKANLV 147 + + V+ K V I +A LV Sbjct: 130 GNVRLMVDDKTFVIPYGEITRAKLV 154 >UniRef50_C3WCG0 Putative uncharacterized protein n=6 Tax=Fusobacterium RepID=C3WCG0_FUSMR Length = 160 Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 87/148 (58%), Gaps = 5/148 (3%) Query: 6 QKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLD 63 +K+ +++T V +G LV IE+++ G +RIY+++ +G I +++CA +S ++ D Sbjct: 12 EKIEKIVTPVVNEMGLSLVDIEYMQDGGYWYVRIYVENLNGEITLEECAAISGKIDE--D 69 Query: 64 VEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI-KAVDG 122 V+ I + LEVSSPG++RPL E + RF GE++ + L+ + +++ ++G+I + D Sbjct: 70 VDKLIEQRFFLEVSSPGIERPLKKIEDFIRFKGEKIKVSLKHKINDKKSFEGIITECKDN 129 Query: 123 EMITVTVEGKDEVFALSNIQKANLVPHF 150 + E S ++KAN++ F Sbjct: 130 IIFLEIEEENIVEIPFSEVKKANIIYEF 157 >UniRef50_A1UU47 Ribosome maturation factor rimP n=5 Tax=Bartonella RepID=RIMP_BARBK Length = 209 Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 81/142 (57%), Gaps = 6/142 (4%) Query: 12 ITAPV-EALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVEDPIT 69 + AP+ + LG+ LV ++ + TL+I + DG + ++DC +S +S +LDV++ I Sbjct: 31 LVAPLLKPLGYRLVRVKLLGLNGLTLQIMAERADGTMTIEDCEIISKTISPLLDVQNVIE 90 Query: 70 VAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV--DGEMITV 127 Y+LE+SSPG+DRPL + + G + R V RRK++G ++ V DG ++ + Sbjct: 91 RKYHLEISSPGIDRPLVRKSDFFHWQGYTAKIETRTIVNGRRKFRGALENVTQDGFILNI 150 Query: 128 TVEGKDEV--FALSNIQKANLV 147 ++E + SNI A+LV Sbjct: 151 DAAPEEETVYVSFSNITNAHLV 172 >UniRef50_B9L6E1 Ribosome maturation factor rimP n=1 Tax=Nautilia profundicola AmH RepID=RIMP_NAUPA Length = 148 Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 47/138 (34%), Positives = 78/138 (56%), Gaps = 9/138 (6%) Query: 8 LTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVED 66 L ++I VE G +L IE G R+YI G++++DCA +++ +S + D+ED Sbjct: 6 LNDIIKNIVEDNGCDLYDIELSEEGGHKYFRVYITKPGGVSLNDCAKINNLISPIFDIED 65 Query: 67 PITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMIT 126 P+ Y LEVSSPGL+R L EH+ + +GE+V ++ + K +G +K+ + Sbjct: 66 PVEGKYFLEVSSPGLERKLTKPEHFEKSIGEKV----KVTTNDGTKLKGELKSF---IDN 118 Query: 127 VTVEGKDEVFALSNIQKA 144 V GK++V +I+KA Sbjct: 119 VAEIGKEKV-NFDDIKKA 135 >UniRef50_D2Q1L3 Putative uncharacterized protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2Q1L3_9ACTO Length = 178 Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 50/137 (36%), Positives = 71/137 (51%), Gaps = 6/137 (4%) Query: 16 VEALGFELVGIEFI-RGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPI-TVAYN 73 VE G +L E GR LR+ +D + GI++DD ADV+ +S LD +D + AY Sbjct: 21 VEQFGCDLEAAEVTPAGRRRLLRVLVDRDGGISLDDVADVTRAISKALDADDVMGDGAYT 80 Query: 74 LEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTVEGKD 133 LEVSSPG+DRPL H+ R + V + L + K G IK V E + V+G Sbjct: 81 LEVSSPGVDRPLTLPRHWRRNISRLVAVTL----HSGDKLTGRIKTVSDETADLDVDGTL 136 Query: 134 EVFALSNIQKANLVPHF 150 A +++ KA + F Sbjct: 137 RTVAYADVDKAKVQIEF 153 >UniRef50_A7VT55 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VT55_9CLOT Length = 167 Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 44/131 (33%), Positives = 71/131 (54%), Gaps = 10/131 (7%) Query: 16 VEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPITVAYNL 74 V+ G EL + +++ G LR+YID ++G+ ++DC +VS + LD DP+ +Y L Sbjct: 22 VKDFGLELWDVRYLKEGAQWYLRVYIDRQEGVTIEDCENVSRAIDEPLDRLDPVDQSYCL 81 Query: 75 EVSSPGLDRPLFTAEHYARFVGEEVTL-VLRMAVQNRRKWQGVIKAVD--------GEMI 125 EV SPGL+R L EH+ RF G V + ++R R++ GV+ + E Sbjct: 82 EVCSPGLERELVRPEHFQRFEGWPVMVKLIRPLDSGEREFNGVLGTYENGVFDLWVNETD 141 Query: 126 TVTVEGKDEVF 136 +++ KD VF Sbjct: 142 VISLAKKDTVF 152 >UniRef50_Q7NFN6 Ribosome maturation factor rimP n=1 Tax=Gloeobacter violaceus RepID=RIMP_GLOVI Length = 156 Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 79/147 (53%), Gaps = 7/147 (4%) Query: 8 LTEMITA---PV-EALGFELVGIEF-IRGRTSTLRIYI-DSEDGINVDDCADVSHQVSAV 61 + E +TA PV E LG +LV + + + +TLR+ I +G +DDC +S + A+ Sbjct: 6 IVEQVTALAEPVAEQLGLQLVAVAYQTHTKPATLRVDIRHPTEGTGLDDCEKMSRALEAL 65 Query: 62 LDVEDPITV-AYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 LD D + + AYNLEVSSPG++R L T + F G V + V +++W+G + Sbjct: 66 LDTRDDLIIGAYNLEVSSPGVERVLTTDREFMAFRGFPVMVKTFGPVDGKKQWEGRLLER 125 Query: 121 DGEMITVTVEGKDEVFALSNIQKANLV 147 DGE + +T+ G+ + + LV Sbjct: 126 DGENVYLTIAGRRVALPRPQVARVQLV 152 >UniRef50_C6HXJ9 Putative uncharacterized protein n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HXJ9_9BACT Length = 171 Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 42/115 (36%), Positives = 68/115 (59%) Query: 6 QKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVE 65 ++LTE IT ++++G L + + LR+++D +G+ +D VS +VS +LDV Sbjct: 11 ERLTEEITLLLDSMGLTLYDLVLPKKSGGVLRVFVDGPEGVTIDQIESVSRRVSVLLDVL 70 Query: 66 DPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 DP Y+LEVSSPGLDR L E + G+ V+L L A++ ++ +G I +V Sbjct: 71 DPFPGRYHLEVSSPGLDRLLKIPEDLRKNEGKWVSLKLVDAIEGQKVLKGRIGSV 125 >UniRef50_C8W721 Putative uncharacterized protein n=3 Tax=Atopobium RepID=C8W721_ATOPD Length = 164 Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 82/154 (53%), Gaps = 12/154 (7%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYID----SEDGINVDDCADVSH 56 +S LEQ + ++ + E+VG + +R+ ID +E+ I++D+ A + Sbjct: 11 LSALEQA---ALNHHIDIVDVEIVG----SSKNPLVRVRIDHDDETEETISLDEVAQETS 63 Query: 57 QVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGV 116 +S +D DP ++ LEVSSPG+ RPL A+ + RF G+EV L A + RRK+ G Sbjct: 64 WISETIDELDPFPASFTLEVSSPGMARPLRRAKDFVRFAGQEVQLQT-TATEGRRKFTGT 122 Query: 117 IKAVDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 + ++G I++ E + LS ++K + P F Sbjct: 123 LLGIEGTTISIQTEDEVCTIDLSELKKCVIKPAF 156 >UniRef50_C9M6Q7 Putative uncharacterized protein n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M6Q7_9BACT Length = 173 Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 77/145 (53%), Gaps = 1/145 (0%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLD 63 L +LT ++ V LG+ G++ + T+R++ID +G+ DDC VS + +L+ Sbjct: 8 LRGELTALLKPVVVELGYRWEGLQLEEIGSMTVRVFIDGPNGVTADDCEVVSKAIDPLLE 67 Query: 64 VEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGE 123 + Y LEVSSPGL+R LF + Y RF+GE + + ++ GV++AVD E Sbjct: 68 GAMADSNRYYLEVSSPGLERFLFELDDYRRFIGETARIRFHGEGSHIKRLTGVVEAVDEE 127 Query: 124 -MITVTVEGKDEVFALSNIQKANLV 147 +T+ E + +I + +LV Sbjct: 128 GRVTIHTEEETAAIPFEDIVEGSLV 152 >UniRef50_D0GIT1 Putative uncharacterized protein n=1 Tax=Leptotrichia goodfellowii F0264 RepID=D0GIT1_9FUSO Length = 178 Score = 75.1 bits (183), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 86/145 (59%), Gaps = 6/145 (4%) Query: 7 KLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGI-NVDDCADVSHQVSAVLDV 64 K + I +++L EL +E+I+ G + LR+Y++ +DG ++DDC ++S ++ + D Sbjct: 23 KFEKEIQDSLDSLDLELSDLEYIQEGGYNYLRVYVEKKDGTTSLDDCIELSSKIDGLAD- 81 Query: 65 EDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEM 124 + I + LEVS+PG++R L + + RF GE++ L + ++ ++ ++G ++ + + Sbjct: 82 -NLINEKFYLEVSTPGVERKLKKEKDFIRFSGEKIKLHSKSQIEGKKTFEGKLEKFENDT 140 Query: 125 ITVTVE--GKDEVFALSNIQKANLV 147 I + + GK LS ++KANL+ Sbjct: 141 IFLNDQNIGKTVEIPLSKLKKANLI 165 >UniRef50_UPI0001699731 15 kDa protein n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001699731 Length = 79 Score = 75.1 bits (183), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 33/65 (50%), Positives = 45/65 (69%) Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 +LDVEDPI Y+LEVSSPGLDRPLF A + RF G+ V + RM + N+R++ G + + Sbjct: 1 MLDVEDPIKEKYDLEVSSPGLDRPLFEAADFERFKGQRVRVKTRMKIGNQRRFSGTLCGL 60 Query: 121 DGEMI 125 +G I Sbjct: 61 EGNTI 65 >UniRef50_D2MK27 Putative uncharacterized protein n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MK27_9BACT Length = 157 Score = 75.1 bits (183), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 68/124 (54%), Gaps = 2/124 (1%) Query: 8 LTEMITAPV-EALGFELVGIE-FIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVE 65 L + I P+ +AL E++ +E +G + +R+ ++ E G+ + DC + LDV Sbjct: 7 LVQGIAEPIAKALRLEIIEVECHGQGAKTIVRVIVEKEGGVGIQDCEQFHQSLGRALDVA 66 Query: 66 DPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMI 125 DP+ AY L+VSSPGLDRPL + Y + VG + + + VQ + G + VD + I Sbjct: 67 DPVAHAYRLDVSSPGLDRPLKRRKDYDQAVGRTIRVKVHAPVQGKGTVVGQLAEVDDQGI 126 Query: 126 TVTV 129 T+ V Sbjct: 127 TLQV 130 >UniRef50_D1PLN8 Putative uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLN8_9FIRM Length = 163 Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 45/130 (34%), Positives = 68/130 (52%), Gaps = 3/130 (2%) Query: 7 KLTEMITAP-VEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDV 64 K E + P VE +G L + F + G LR+ ID ++ ++ D C VS + +LD Sbjct: 12 KTVETLVRPTVEGMGLRLWDVRFEKEGPDWFLRVLIDRDEPLDTDTCEAVSRAIDPILDE 71 Query: 65 EDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTL-VLRMAVQNRRKWQGVIKAVDGE 123 DPI +Y LEV SPGL R L EHY G++ ++R RR G+++ +DGE Sbjct: 72 ADPIDQSYYLEVGSPGLGRRLTRPEHYEALRGQKCAAHLIRPDEAGRRDVAGILQGLDGE 131 Query: 124 MITVTVEGKD 133 V+G++ Sbjct: 132 GNVTLVDGEE 141 >UniRef50_A9ITY3 Ribosome maturation factor rimP n=11 Tax=Burkholderiales RepID=RIMP_BORPD Length = 163 Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 74/142 (52%), Gaps = 20/142 (14%) Query: 22 ELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPITVAYN-LEVSSPG 80 ELV +E R LR+ ID G+ ++DC VS Q+S V +VE+ + Y LEV SPG Sbjct: 18 ELVDVE--RAALGLLRVTIDKAGGVRIEDCEQVSRQLSRVYEVEN---IDYKRLEVGSPG 72 Query: 81 LDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK-------AVDGEMITVTVE--- 130 +DRPL T RF GE + + LR + R+ + G++ A D + +E Sbjct: 73 VDRPLRTEAELRRFAGERIEIKLRQPLDGRKVFSGILSAPANDGAAADAQPAVFGLEFEA 132 Query: 131 GKDEV----FALSNIQKANLVP 148 KD++ F L ++++A L P Sbjct: 133 KKDDIQVLNFTLGDVERAKLDP 154 >UniRef50_C0QHM0 Ribosome maturation factor rimP n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=RIMP_DESAH Length = 155 Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/130 (34%), Positives = 67/130 (51%), Gaps = 1/130 (0%) Query: 18 ALGFELVGIEFIRGRTSTL-RIYIDSEDGINVDDCADVSHQVSAVLDVEDPITVAYNLEV 76 A GFELV +E + + + RIY+D GI +DDC ++ + ++DVE AY LE+ Sbjct: 25 AEGFELVHVECVSDQGGMIVRIYLDKPGGITLDDCVHMTRHLGDIIDVELEEISAYRLEI 84 Query: 77 SSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTVEGKDEVF 136 SSPG RPL + RF+G V + + R K+ G++ V + V V + VF Sbjct: 85 SSPGAKRPLKKLADFERFLGSRVKVEAVEPIGGRLKFTGILSKVQDGCVEVVVNNEPVVF 144 Query: 137 ALSNIQKANL 146 I K+ L Sbjct: 145 HFEQISKSRL 154 >UniRef50_C7NAM7 Putative uncharacterized protein n=2 Tax=Fusobacteriaceae RepID=C7NAM7_LEPBD Length = 163 Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 84/152 (55%), Gaps = 10/152 (6%) Query: 4 LEQKLTEM---ITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDG--INVDDCADVSHQ 57 +EQ L E I ++ + EL +E++R G + LR+Y++ EDG +DDC D S + Sbjct: 1 MEQILNEFEKRIELHLKEMKLELADLEYVRDGGYNYLRVYVEKEDGSTTTLDDCIDFSRE 60 Query: 58 VSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI 117 + V D D I + LEVS+PG++R L + + RF+GE++ + + + +K+ G + Sbjct: 61 IDGVAD--DLIDEKFFLEVSTPGVERRLKKPKDFLRFLGEKINVQAKSNIDGAKKFLGKL 118 Query: 118 KAVDGEMITVTVE--GKDEVFALSNIQKANLV 147 + + + I + E GK L ++KANL+ Sbjct: 119 EKFENDTIFLLDENLGKVVEIPLLKLKKANLI 150 >UniRef50_C1B310 Ribosome maturation factor rimP n=3 Tax=Nocardiaceae RepID=RIMP_RHOOB Length = 190 Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 50/146 (34%), Positives = 83/146 (56%), Gaps = 11/146 (7%) Query: 5 EQKLTEMITAPVEALGFELVGIEF-IRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLD 63 ++++TE+I+ V+ G+++ + + G+ S +RI +DS+ G+ +D A++SH++S V D Sbjct: 6 KERVTELISDLVQRQGYDVEDVAVTLAGKHSAVRIMVDSDAGLELDAVANLSHEISEVFD 65 Query: 64 -VEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 V D Y LEV+SPG+DRPL H+ R G + + L G I A+DG Sbjct: 66 SVSDFGESPYTLEVTSPGIDRPLTHERHWRRARGRKARIDL-----AHETVVGRIGALDG 120 Query: 123 EMITVTV---EGKD-EVFALSNIQKA 144 + + V + G D AL++IQKA Sbjct: 121 DSVAVVIGSRTGPDVRRIALADIQKA 146 >UniRef50_B1CB57 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CB57_9FIRM Length = 172 Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 78/133 (58%), Gaps = 2/133 (1%) Query: 20 GFELVGIEFIR-GRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVEDPITVAYNLEVS 77 G EL+ IEF + G LR+YI+ +G +++D+ + V+ +S +LD ED I Y LEVS Sbjct: 38 GCELIDIEFKKEGNNKVLRLYIERIEGKVSLDEISTVNRLLSDLLDEEDFIEEEYILEVS 97 Query: 78 SPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTVEGKDEVFA 137 SPG++R + + + +F G +V + L + ++++ G+++ + E + + ++G+ V Sbjct: 98 SPGVNRVIKKEKDFIKFKGSKVDVKLYKPLNGKKQFTGILEGYENENVLIDLDGEHLVIP 157 Query: 138 LSNIQKANLVPHF 150 +I K NL F Sbjct: 158 HKDISKVNLSFDF 170 >UniRef50_C4XIM4 Putative uncharacterized protein n=2 Tax=Desulfovibrio RepID=C4XIM4_DESMR Length = 189 Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 44/139 (31%), Positives = 77/139 (55%), Gaps = 11/139 (7%) Query: 12 ITAPVEA-LGFELVGIEFIR-GRTSTLRIYID-SED--------GINVDDCADVSHQVSA 60 + AP A LG + G+E G +R+Y+D + D G+ +D+CA VS + A Sbjct: 14 LIAPYAATLGLAVWGVELASAGHRQLVRLYLDLAADTPRTPERLGVTIDECARVSRHLGA 73 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 +L+V++ Y LEVSSPGL R F A +VG E+ L + + R++++G++ V Sbjct: 74 LLEVDEIFHNPYVLEVSSPGLSRRFFEAGQLLAYVGREIEAKLAVPREGRKRFKGILSGV 133 Query: 121 DGEMITVTVEGKDEVFALS 139 + +++TV+ + F++S Sbjct: 134 SDQTVSMTVDPGAKEFSIS 152 >UniRef50_C9MWU5 UPF0090 protein n=2 Tax=Fusobacteriaceae RepID=C9MWU5_9FUSO Length = 162 Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 85/151 (56%), Gaps = 9/151 (5%) Query: 4 LEQKLTEM---ITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGIN-VDDCADVSHQV 58 +EQ L E I ++ + EL +E++R G + LR+Y++ DG +DDC D S ++ Sbjct: 1 MEQILNEFEKKIKQHLKEMNLELADLEYVRDGGYNYLRVYVEKLDGTTTLDDCIDFSREI 60 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 + D D I + LEVS+PG++R L + + RF+GE + + + ++ +K+ G ++ Sbjct: 61 DGIAD--DLIEEKFFLEVSTPGVERRLRKPKDFVRFLGERINVQAKSNIEGAKKFIGKLE 118 Query: 119 AVDGEMITVTVEGKDEV--FALSNIQKANLV 147 + + + + + +++ LS ++KANL+ Sbjct: 119 KFENDTVFLLDDKLEKIVEIPLSKLKKANLI 149 >UniRef50_A4E6V0 Putative uncharacterized protein n=3 Tax=Collinsella RepID=A4E6V0_9ACTN Length = 170 Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 79/150 (52%), Gaps = 5/150 (3%) Query: 5 EQKLTEMITAPVEALGFELVGIEFIRG-RTSTLRIYIDSEDG--INVDDCADVSHQVSAV 61 EQ + + + A ++V +E + + +R+ I+ +G ++++D + V V Sbjct: 13 EQAIIDALEAVAPQHDIDIVDVELVGATKAPCVRVRIEGAEGQSLSLNDVTANTKWVGDV 72 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 ++ DPI+ +Y LEVSSPG+ RPL +ARFVGE L A + RRK+ G I + Sbjct: 73 IEELDPISSSYTLEVSSPGMARPLRRPSDFARFVGENCELT-STATEGRRKYAGKIASAT 131 Query: 122 GEMITVTVE-GKDEVFALSNIQKANLVPHF 150 +T+ +E G+ S+++K L P + Sbjct: 132 ETSVTLELEDGESVTLDFSDVKKCKLKPTY 161 >UniRef50_B9K861 Ribosome maturation factor rimP n=6 Tax=Thermotogaceae RepID=RIMP_THENN Length = 150 Score = 71.6 bits (174), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 52/138 (37%), Positives = 82/138 (59%), Gaps = 10/138 (7%) Query: 17 EALGFELVGIEFIR-GRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVEDPITVAYNL 74 E G E+ I++ R R LR+ ID+ G ++V DC S ++ LD ED I +Y L Sbjct: 19 EKQGLEIFDIQYRRESRGWVLRVVIDNPVGYVSVRDCELFSRELERFLDREDLIEHSYTL 78 Query: 75 EVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA-VDGEMITVTVE-GK 132 EVSSPGLDRPL + Y RF G+ + ++ ++ + + G I++ VDG ++T++ E GK Sbjct: 79 EVSSPGLDRPLRGPKDYQRFTGK----LAKIITKDGKTFIGRIESFVDG-IVTISDEKGK 133 Query: 133 DEVFALSNIQKANLVPHF 150 E+ + +++KANL F Sbjct: 134 HEI-DIEDVRKANLEIEF 150 >UniRef50_B6W939 Putative uncharacterized protein n=1 Tax=Anaerococcus hydrogenalis DSM 7454 RepID=B6W939_9FIRM Length = 146 Score = 71.6 bits (174), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 44/115 (38%), Positives = 61/115 (53%), Gaps = 5/115 (4%) Query: 7 KLTEMITAPVEALGFELVGIEFI-RGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVE 65 KL E + + + LG+ELV IEF+ G LR +I + GI +DDC S+ +S LD Sbjct: 6 KLKENLESDINNLGYELVDIEFVTEGNNKILRFFIYKDGGITIDDCEKTSNLLSERLDEI 65 Query: 66 DPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 D I Y LEVSSP L RPL T R E +L + ++N K+ I+ + Sbjct: 66 DLIKSFYYLEVSSPDLSRPLKTDRDLERNKDE----LLEVKLKNGEKFLANIEEI 116 >UniRef50_A6Q228 Ribosome maturation factor rimP n=3 Tax=Epsilonproteobacteria RepID=RIMP_NITSB Length = 142 Score = 71.6 bits (174), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 37/98 (37%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIRGRTSTL-RIYIDSEDGINVDDCADVSHQVSAV 61 +LEQ++ ++ VE+ G +L IE + R T+ R+ I + +G+++ C ++S+ +S + Sbjct: 2 SLEQEIKQI----VESCGAKLYDIETVSDRGKTIYRVTITAPEGVDLQKCVEISNLISPL 57 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEV 99 LDV P++ YNLEVSSPG++R L H+ VGE+V Sbjct: 58 LDVHPPVSGDYNLEVSSPGVERKLKKPSHFEHSVGEKV 95 >UniRef50_C9KKC0 Putative uncharacterized protein n=2 Tax=Veillonellaceae RepID=C9KKC0_9FIRM Length = 211 Score = 71.6 bits (174), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 42/125 (33%), Positives = 68/125 (54%), Gaps = 3/125 (2%) Query: 22 ELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGL 81 ELV E+++ LR+YID E GI+++DC +S ++ LD D + +Y LEVSSPG+ Sbjct: 86 ELVDAEYVKEHDWYLRVYIDKEGGIDIEDCQALSEKLEEALDKGDVVPDSYILEVSSPGI 145 Query: 82 DRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTVEGKDEVFALSNI 141 DR L + R G++V + L + ++ G + DG+ I + E K L++I Sbjct: 146 DRVLRKPRDFTREQGKKVDVTLYAPREGKKLVVGELTGFDGDAIELDGETK---IPLADI 202 Query: 142 QKANL 146 + L Sbjct: 203 AQVRL 207 >UniRef50_C3XJ54 Putative uncharacterized protein n=1 Tax=Helicobacter bilis ATCC 43879 RepID=C3XJ54_9HELI Length = 167 Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 73/123 (59%), Gaps = 5/123 (4%) Query: 6 QKLTEMITAPVEALGFELVGIEFIRGRTST-LRIYIDSEDGINVDDCADVSHQVSAVLDV 64 Q L + I + + G EL IE ++ S LRI I ++GI++DDC ++S ++ +LDV Sbjct: 4 QDLHDKIESLITQKGLELYDIELLKENESMILRISIFKKEGISLDDCENISTLIAPLLDV 63 Query: 65 EDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEM 124 E AY+LEVSSPG++R L +H+ +G++V + + N+ G++++ + + Sbjct: 64 ELSDLEAYHLEVSSPGVERNLKKPKHFLCSIGQKVAVTM----SNKTIINGILESYNTDE 119 Query: 125 ITV 127 IT+ Sbjct: 120 ITI 122 >UniRef50_A3ER83 Putative uncharacterized protein n=2 Tax=Leptospirillum sp. Group II RepID=A3ER83_9BACT Length = 167 Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 5/133 (3%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLD 63 E++L ++T LG L + ++++D G+ +D VS ++S +LD Sbjct: 3 FEKELDHILTP----LGLSLHDLVLPGKNRGVFKVFVDHPQGVGLDQLEAVSRRISDLLD 58 Query: 64 VEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD-G 122 V DP Y LEVSSPGLDR L E VG+ + + ++ Q +R ++G I +++ G Sbjct: 59 VLDPFPGKYRLEVSSPGLDRVLRIPEDLLLHVGKHIKVKMKEPFQGQRVFRGTIGSLEAG 118 Query: 123 EMITVTVEGKDEV 135 ++ +VEGK ++ Sbjct: 119 VLLISSVEGKKQL 131 >UniRef50_Q72KG3 Ribosome maturation factor rimP n=3 Tax=Thermaceae RepID=RIMP_THET2 Length = 157 Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 48/140 (34%), Positives = 67/140 (47%), Gaps = 8/140 (5%) Query: 8 LTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDP 67 L +++ V LG +++ + F RG +R+ E I V D + S + A LD EDP Sbjct: 19 LWQLVEEAVSPLGLDVLEVHFARGEL-LVRLERKDERPITVADLEEASRHIEAALDREDP 77 Query: 68 ITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITV 127 I +Y L V SPG RPLFT H+ RF G L+ V + G I V+GE + Sbjct: 78 IPGSYRLLVESPGPKRPLFTRRHFERFQG------LKAKVPGPEGFTGRILRVEGEEVVF 131 Query: 128 TVEGKDEVFALSNIQKANLV 147 V G +E +ANL Sbjct: 132 QV-GDEERRLRIGTFRANLA 150 >UniRef50_C7H124 Putative uncharacterized protein n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H124_9FIRM Length = 187 Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 49/183 (26%), Positives = 79/183 (43%), Gaps = 36/183 (19%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDS-------------------- 42 +E + E A + L E+ +E+ R G+ LR+YID Sbjct: 5 IENAVEEACKAKLAELSLEIYSVEYKREGKDWILRVYIDRMFCEDAVGIGYDKQAGMNTD 64 Query: 43 ---------------EDGINVDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGLDRPLFT 87 E I +D+C +S +S LD D I Y LEVS+PG+DR L Sbjct: 65 ARCQKAQGIKADSKREKPIGIDECTAISEAISEYLDKNDIIDNNYYLEVSTPGIDRELKK 124 Query: 88 AEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTVEGKDEVFALSNIQKANLV 147 + RF G V + L + +++++G + + E I V V+ +VF+ +++ K NL Sbjct: 125 DIDFIRFKGRSVDISLYKRIDGQKEYRGTLIEKNDEGIAVEVDESTKVFSNNDVAKVNLA 184 Query: 148 PHF 150 F Sbjct: 185 IEF 187 >UniRef50_B1VYN8 Ribosome maturation factor rimP n=13 Tax=Streptomyces RepID=RIMP_STRGG Length = 167 Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 43/99 (43%), Positives = 57/99 (57%), Gaps = 3/99 (3%) Query: 1 MSTLE-QKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQV 58 MST + ++L ++ V A +L IE R GR LRI +DSE+G+ +D CA++S + Sbjct: 1 MSTTQSERLRGLLEPLVSAQQLDLEEIEVSRAGRRGVLRIIVDSEEGVELDACAELSRAI 60 Query: 59 SAVLDVEDPITVA-YNLEVSSPGLDRPLFTAEHYARFVG 96 S LD D + Y LEVSSPG DRPL HY R G Sbjct: 61 SEKLDETDAMGEGEYVLEVSSPGADRPLTEHRHYVRATG 99 >UniRef50_A5ZWL4 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZWL4_9FIRM Length = 129 Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 39/82 (47%), Positives = 49/82 (59%), Gaps = 1/82 (1%) Query: 5 EQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLD 63 EQK ++ VE GFELV +E+++ LR YID GI V+DC VS S LD Sbjct: 35 EQKAEALLAPIVEGQGFELVDVEYVKEAGNWYLRGYIDKPGGITVNDCEAVSRAFSDKLD 94 Query: 64 VEDPITVAYNLEVSSPGLDRPL 85 D I +Y +E+SSPGLDRPL Sbjct: 95 ENDFIEDSYIMEISSPGLDRPL 116 >UniRef50_D2SDW9 Putative uncharacterized protein n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2SDW9_9ACTO Length = 196 Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 77/147 (52%), Gaps = 8/147 (5%) Query: 7 KLTEMITAPVEALGFELVGIEFI---RGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLD 63 ++ ++ VEA G++L E + GR S +R+ +D + G+ +DD A+VS VS LD Sbjct: 13 RMAGLVAPVVEAAGYDLE--ELVVTPAGRRSIVRVVVDRDAGVTLDDVAEVSRAVSTALD 70 Query: 64 VEDP--ITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 D + Y LEV+SPG+DRPL H+ R G VT+ + + + V++ VD Sbjct: 71 EHDGEFGSAPYVLEVTSPGVDRPLTEPRHWRRNTGRLVTVAVGREGSSEQVTARVLE-VD 129 Query: 122 GEMITVTVEGKDEVFALSNIQKANLVP 148 G+ +T+ VE K + A VP Sbjct: 130 GDGVTLAVEAKGKPGAKKRPPTRRQVP 156 >UniRef50_C8PIF5 Putative uncharacterized protein n=1 Tax=Campylobacter gracilis RM3268 RepID=C8PIF5_9PROT Length = 139 Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 71/136 (52%), Gaps = 7/136 (5%) Query: 12 ITAPVEALGFELVGIEFI--RGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPIT 69 + A G +L +E + GRT RI I G+ +DDC +S +S + DVE P+ Sbjct: 4 LEALARECGVQLYDVETVSENGRT-IYRISITKAGGVGLDDCERLSRLLSPIYDVEPPLE 62 Query: 70 VAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTV 129 + LEV SPGL+R L +H+A VGE ++R++ + +K G + +G ++ + Sbjct: 63 GEWTLEVGSPGLERKLSKPQHFANSVGE----LVRLSCTDGQKLSGEVLDCEGGVLRLRT 118 Query: 130 EGKDEVFALSNIQKAN 145 +G + L I+KA Sbjct: 119 DGGEVSVRLDEIKKAR 134 >UniRef50_C7H6A0 Protein associated with NUS operon n=2 Tax=Clostridiales RepID=C7H6A0_9FIRM Length = 163 Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/146 (34%), Positives = 77/146 (52%), Gaps = 4/146 (2%) Query: 6 QKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDD--CADVSHQVSAVL 62 Q++ ++ VE +G L + F + G LR+ ID DG +D CADVSH + +L Sbjct: 11 QRVEALVRPTVEGMGLRLWDVVFEKEGPDWYLRVLIDKTDGTTMDTDTCADVSHALDPIL 70 Query: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNR-RKWQGVIKAVD 121 D DPI +Y LEV SPGL R L EHY G++V++ L A +N +++ G++ + + Sbjct: 71 DEADPIEQSYYLEVGSPGLGRKLTRPEHYEAVQGQKVSVRLYRANENGVKEFSGLLTSRE 130 Query: 122 GEMITVTVEGKDEVFALSNIQKANLV 147 G IT+ F LS + L Sbjct: 131 GNTITLEGPAGPMQFELSAVSTVRLC 156 >UniRef50_C1F695 Ribosome maturation factor rimP n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=RIMP_ACIC5 Length = 201 Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 41/120 (34%), Positives = 57/120 (47%), Gaps = 16/120 (13%) Query: 45 GINVDDCADVSHQVSAVLDVED--PITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLV 102 G+ +DC+ S +LDVE+ P Y LEVSSPGLDR L + Y RF G V L Sbjct: 80 GVTHEDCSAFSTDFGTLLDVEELMPGASEYTLEVSSPGLDRKLQSRADYERFAGSLVKLS 139 Query: 103 LRMAVQNRRKWQGVIKAVDGEMITVTVEGKDEV--------------FALSNIQKANLVP 148 V R WQG + +DG+ + + + + AL N++KA L+P Sbjct: 140 TFEPVNGNRHWQGRMAGLDGDTLRLDLTAMKQKGKGKEKKSAAETVEIALGNVEKAQLIP 199 >UniRef50_B1XY65 Ribosome maturation factor rimP n=57 Tax=Burkholderiales RepID=RIMP_LEPCP Length = 183 Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 82/157 (52%), Gaps = 23/157 (14%) Query: 10 EMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG----------INVDDCADVSHQVS 59 + + V +G+ELV E R L +YID G + V+DC V+ Q+ Sbjct: 5 QAVETTVTGMGYELVECE--RSARGLLCVYIDRVPGSVYLTGPGEFVLVEDCELVTRQLR 62 Query: 60 AVLDVEDPITVAYN-LEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 + +VE+ V Y+ LEVSSPGLDRPL + RF+G +V + L+ Q R+ ++G+++ Sbjct: 63 YLFEVEN---VDYSRLEVSSPGLDRPLRKVGDFLRFLGSDVDVTLKAPFQGRKNYRGLLR 119 Query: 119 AV----DGEMITVTVEGKDEV---FALSNIQKANLVP 148 + V +GK++ FAL +++A LVP Sbjct: 120 QAGDTPEQGFELVFQDGKEDKVLGFALDEVREARLVP 156 >UniRef50_A7ZC71 Ribosome maturation factor rimP n=3 Tax=Campylobacter RepID=RIMP_CAMC1 Length = 138 Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 10/116 (8%) Query: 31 GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEH 90 GR + R+YI + G+++DDC VS +S + DV P++ YNLEVSSPGL+R L H Sbjct: 25 GR-AIFRVYITKDGGVSLDDCEKVSRLLSPIFDVTPPVSGDYNLEVSSPGLERKLSKPSH 83 Query: 91 YARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTVEGKDEVFA--LSNIQKA 144 + VGE V + K+ G + D E ++ VE ++ +F +S I+KA Sbjct: 84 FKASVGELVKVQTEA-----EKFAGRLVKADEE--SIAVENEEGIFEINISEIKKA 132 >UniRef50_UPI0001C31DB5 protein of unknown function DUF150 n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31DB5 Length = 139 Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 62/115 (53%), Gaps = 7/115 (6%) Query: 34 STLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYAR 93 +T+R++ID DG++++ C V+H ++ + + Y LEVSSPG +RPL H+ R Sbjct: 30 TTVRLFIDHPDGVSLELCERVTHHLAGIRE-------RYGLEVSSPGSERPLTKPAHFRR 82 Query: 94 FVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTVEGKDEVFALSNIQKANLVP 148 ++G+ + R A + + G + + +T+ E + I+++NLVP Sbjct: 83 YLGQRARVRTRGAHGGQGSFTGELVGANESEVTIAAETGVVAIPYTEIKRSNLVP 137 >UniRef50_Q6MMS8 Ribosome maturation factor rimP n=1 Tax=Bdellovibrio bacteriovorus RepID=RIMP_BDEBA Length = 174 Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 82/148 (55%), Gaps = 15/148 (10%) Query: 18 ALGFELVGIEFIR-GRTSTLRIYIDSED--GINVDDCADVSHQVSAVLDVEDPITVA--Y 72 A G L IEF+ G+ TLR++ID E+ I+++DC +VS +S +LD ++ + Y Sbjct: 21 AQGCVLYDIEFVGLGKGRTLRLFIDREEEGAISIEDCTNVSRGLSEILDADEEMIPGGEY 80 Query: 73 NLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQN----RRKWQG------VIKAVDG 122 NLEVS+PGLDR L H+ + +G++V + A+++ +KW+ V+++ D Sbjct: 81 NLEVSTPGLDRHLKKPWHFKKAIGKKVYIKTTKALESVGVEDKKWKNAKTVEEVLESADE 140 Query: 123 EMITVTVEGKDEVFALSNIQKANLVPHF 150 + + V+ + + I +A LV + Sbjct: 141 QGVRFVVKDVEIKIPYAMIDRAKLVFEY 168 >UniRef50_B6WX92 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WX92_9DELT Length = 244 Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 35/162 (21%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYID-------------------- 41 ++L++ +T + T V+A G E+ G+E + +T+R+++D Sbjct: 4 NSLKETVTRLATPLVQAQGLEIWGVEIAQAGRTTVRVFVDLPLEVKQAQAALSADSDPAD 63 Query: 42 ---------SEDGINVDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYA 92 + ++D C ++S Q+ L+VED I AY LEVS+PG R F+ + Sbjct: 64 NLEDSADIMAARSASIDQCEEISRQLGLALEVEDLIEQAYVLEVSTPGFSRLFFSLDQMR 123 Query: 93 RFVGE--EVTLVLRMAVQN----RRKWQGVIKAVDGEMITVT 128 +VG+ E+ +V A +N RR W+GV++ V + V Sbjct: 124 SYVGDMVELRMVSAYAPENAPAARRAWRGVLREVTDSAVRVA 165 >UniRef50_A0LE22 Ribosome maturation factor rimP n=1 Tax=Magnetococcus sp. MC-1 RepID=RIMP_MAGSM Length = 185 Score = 68.6 bits (166), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 81/162 (50%), Gaps = 12/162 (7%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDS-------EDGINVDDCA 52 MS + QK+ + + E+V + + R G +R+ D E I++D+C Sbjct: 24 MSDIAQKVEALAIQAAKTEDCEVVEVIYRREGGVYVVRVAADKLPDDQGQERHISLDECG 83 Query: 53 DVSHQVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGE--EVTLVLRMAVQN- 109 +S Q+S++LDV D I AY+LEVSSPG++RPL + RF G+ E+ M ++ Sbjct: 84 SISRQISSLLDVHDVIPNAYHLEVSSPGIERPLIKDGDFTRFAGKLVEIRTYQPMDTESG 143 Query: 110 -RRKWQGVIKAVDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 R+K++G + + M+ V + + KA+L F Sbjct: 144 PRKKFRGTLLGLQEAMVVVAEANGEVRIPWEQVAKAHLTFDF 185 >UniRef50_A0LV30 Ribosome maturation factor rimP n=1 Tax=Acidothermus cellulolyticus 11B RepID=RIMP_ACIC1 Length = 170 Score = 68.2 bits (165), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 42/108 (38%), Positives = 60/108 (55%), Gaps = 6/108 (5%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTST-LRIYIDSEDGINVDDCADVSHQVSA 60 ST Q+L E++ V G +L G+ + RTS LRI +D + G+ +D+ A S +S Sbjct: 4 STGAQRLAELLAPVVAGQGLDLEGVTLLDHRTSAHLRIVVDKDGGVQLDEIAAASQAISH 63 Query: 61 VLDVE---DPI--TVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVL 103 LD + D I +Y LEVSSPG+DRPL H+ R +G V + L Sbjct: 64 FLDNDAEADAIIGPRSYTLEVSSPGIDRPLVEPRHWRRAIGRLVRVQL 111 >UniRef50_C6XFV9 Putative uncharacterized protein n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XFV9_LIBAP Length = 192 Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 64/111 (57%), Gaps = 1/111 (0%) Query: 8 LTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVED 66 ++ +I +E + F V I + + L+I+++ +DG + + DC ++S +S +LDVE+ Sbjct: 25 ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84 Query: 67 PITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI 117 I Y LEVSSPG+DRP+ + R+ G V + ++ +++K G I Sbjct: 85 IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKI 135 >UniRef50_C0W0C2 Protein of hypothetical function DUF150 n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W0C2_9ACTO Length = 168 Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 72/134 (53%), Gaps = 7/134 (5%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG---INVDDCADVSHQV 58 + +E+K+ + + V+A G L ++ + +RI +D E+G ++ DD +VS ++ Sbjct: 4 TAIEEKVLDCVEPVVKAQGLFLEDVKVSERSETVVRIIVDLEEGTYLVSSDDLQEVSWKI 63 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 S LD DPI AY LE+S+PG +R L T HY R + V + L ++ + +G I+ Sbjct: 64 SEALDAADPIEQAYTLEISTPGAERKLHTPRHYRRSLNRLVEIKL----ADKSELRGFIR 119 Query: 119 AVDGEMITVTVEGK 132 V +T+ E K Sbjct: 120 EVGESELTLEEEAK 133 >UniRef50_Q1MQZ0 Ribosome maturation factor rimP n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=RIMP_LAWIP Length = 196 Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 42/175 (24%), Positives = 83/175 (47%), Gaps = 26/175 (14%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDS---------------EDGI 46 + L + +T++I+ + A G +L GIE I ++I++D+ + I Sbjct: 4 AALIETITQLISPLITAQGLKLWGIELINIPQPIIKIFVDTIETNRLHENNIINSKSEQI 63 Query: 47 NVDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMA 106 ++ CA +S + L+VE+ + LEVSSPGL+R FT + + ++ ++ + L+ Sbjct: 64 TIEQCASLSRLIGLTLEVEELFPNKWTLEVSSPGLERSFFTIQQLSNYINHDIDVTLKEQ 123 Query: 107 ---VQNRRKWQGVIKAVDGEMITVTV--------EGKDEVFALSNIQKANLVPHF 150 NR+K+ G + ++ + + E ++ ++KA LV HF Sbjct: 124 HPLWPNRKKFYGTLISITDNTFMLNLSLAHRKSDEPENVSINWQQVRKATLVHHF 178 >UniRef50_A8F3W0 Ribosome maturation factor rimP n=1 Tax=Thermotoga lettingae TMO RepID=RIMP_THELT Length = 152 Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 75/147 (51%), Gaps = 7/147 (4%) Query: 7 KLTEMITAPVEALGFELVGIEFIRGRTS-TLRIYIDS-EDGINVDDCADVSHQVSAVLDV 64 KL ++ + LG EL I R R LR+ ID E+ +++ C VS Q+ LD Sbjct: 10 KLRPVVIDILSQLGLELFDITLRRERRKLVLRVVIDDPENYVSIRQCEIVSSQIGNYLDE 69 Query: 65 EDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEM 124 D I +Y LEVSSPGLDRPL + Y RFVG + ++ +++ + G IK Sbjct: 70 ADLIDSSYILEVSSPGLDRPLREMKDYNRFVGR----LAKIWLKDGKVLVGNIKETTENT 125 Query: 125 ITVTVE-GKDEVFALSNIQKANLVPHF 150 +++ ++ G+ F+ I+K L F Sbjct: 126 VSIELKNGEIITFSFDQIKKGKLEIDF 152 >UniRef50_B1GZN4 Ribosome maturation factor rimP n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=RIMP_UNCTG Length = 151 Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 74/141 (52%), Gaps = 5/141 (3%) Query: 10 EMITAPVEAL-GFELVGIEFIRGRTSTL-RIYIDSEDGINVDDCADVSHQVSAVLDVEDP 67 E + APV A E+V +++ + + RI+ID + G+ + DC ++S A LD D Sbjct: 8 EDLLAPVAAREKIEIVDVQYSKKAGDWVARIFIDKDSGVTISDCENISCIFGAFLDESDI 67 Query: 68 ITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITV 127 + +Y LE+SSPG R L + + + RF+G + + + N+R + G + D I + Sbjct: 68 LKDSYVLEISSPGFKRVLKSEKSFRRFIGSKTRIRTFKPINNQRNFLGTLLNFDDGRIKI 127 Query: 128 T--VEGKDEVFALSNIQKANL 146 G E+ S+I+KAN+ Sbjct: 128 NDVTNGVVEI-EFSDIRKANI 147 >UniRef50_Q1IZ05 Ribosome maturation factor rimP n=4 Tax=Deinococci RepID=RIMP_DEIGD Length = 155 Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 65/131 (49%), Gaps = 10/131 (7%) Query: 16 VEALGFELVGIEFIR-GRTSTLRIYID--SEDGINVDDCADVSHQVSAVLDVEDPITVAY 72 ++ LG+E++ ++ GR + I +D E + V+D S V A D DPI Y Sbjct: 20 LQPLGYEVLDVQVQNPGRRPIVVIRMDRLDEQPVTVEDLETASRAVGAEFDRVDPIAGEY 79 Query: 73 NLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQ-NRRKWQGVIKAVDGEMITVTVEG 131 LE+ SPG RPL A HY R +G L+ V+ + + IKAVDGE +T V G Sbjct: 80 RLELESPGAKRPLTRARHYERMLG------LKARVRGDGHSFTAPIKAVDGEQVTFDVGG 133 Query: 132 KDEVFALSNIQ 142 +D + Q Sbjct: 134 EDVTLTVGTFQ 144 >UniRef50_A7HL08 Ribosome maturation factor rimP n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=RIMP_FERNB Length = 152 Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 41/102 (40%), Positives = 59/102 (57%), Gaps = 6/102 (5%) Query: 1 MSTLEQKLTEMITAPVE----ALGFELVGIEF-IRGRTSTLRIYIDS-EDGINVDDCADV 54 MS ++++ E + A E ++G EL +++ I+ L I ID +D ++ DC V Sbjct: 1 MSLSQKEIIERVRAIAEPIVTSMGLELFDVKYRIQAGKWVLSIIIDKLDDYVSTRDCELV 60 Query: 55 SHQVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVG 96 S+++ VLD D I Y LEVSSPGLDRPL E + RFVG Sbjct: 61 SYEIEKVLDSHDFIPGRYYLEVSSPGLDRPLKKIEDFRRFVG 102 >UniRef50_A8YVR1 Ribosome maturation factor rimP n=20 Tax=Lactobacillus RepID=RIMP_LACH4 Length = 158 Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 78/134 (58%), Gaps = 8/134 (5%) Query: 7 KLTEMITAPVEAL----GFELVGIEFIRGR-TSTLRIYIDSE-DGINVDDCADVSHQVSA 60 K+ +++ VE + G LV +E+++ + + LRIY+D + +GI++D+ A +S VS Sbjct: 3 KVVDLVRPVVETIIDEHGDMLVDMEYVKEKGQNYLRIYVDRQPNGIDIDEIAALSELVSE 62 Query: 61 VLDV--EDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 LD DP+ Y LE+SSPG +RP+ T + R + + V + L + +++ ++G +K Sbjct: 63 KLDTIDPDPLPDPYVLELSSPGAERPIKTEADWKRALNDYVHIGLYQKIDDKKVYEGTLK 122 Query: 119 AVDGEMITVTVEGK 132 + + I + V+ K Sbjct: 123 YYNNDEIVLEVKDK 136 >UniRef50_A7BD83 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BD83_9ACTO Length = 156 Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 51/150 (34%), Positives = 74/150 (49%), Gaps = 12/150 (8%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTST---LRIYIDS---EDGINVDDCADVS 55 ST E L E++ V G EL + IR R+ LR+ +++ GI+ D ADVS Sbjct: 4 STSEGPLEELLAPVVAQSGLELDSV--IRSRSDAMPLLRVIVEAPIGAGGIDSDTLADVS 61 Query: 56 HQVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQG 115 VS LDV DPI Y LEVS+PG +R L H+ R +G V + LR G Sbjct: 62 RAVSKALDVADPIDGEYLLEVSTPGAERELTKVGHWMRQIGRLVRIKLRAGGY----VSG 117 Query: 116 VIKAVDGEMITVTVEGKDEVFALSNIQKAN 145 + A + T+ V+G+ + +++KA Sbjct: 118 RVVAANETSATIDVDGETTIIDYQDMRKAR 147 >UniRef50_Q9ZM44 Ribosome maturation factor rimP n=14 Tax=Helicobacter RepID=RIMP_HELPJ Length = 146 Score = 64.7 bits (156), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 41/115 (35%), Positives = 67/115 (58%), Gaps = 6/115 (5%) Query: 6 QKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLD 63 +K+ E I +E+LG+ L + ++ LR+ + + +G +++D C VS +S +LD Sbjct: 3 KKIEEKIEGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPLLD 62 Query: 64 VEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 V D I AY LEVSS GL+R L T +H+ +GE+V + L N+ +Q V+K Sbjct: 63 VCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLI----NKESFQAVLK 113 >UniRef50_A1SLL0 Ribosome maturation factor rimP n=2 Tax=Actinomycetales RepID=RIMP_NOCSJ Length = 175 Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 72/132 (54%), Gaps = 6/132 (4%) Query: 15 PVEALGFELVGIEFI-RGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPI-TVAY 72 P+ ALG ++ +E G+ LR+ +D + G+ +D+ A+ + +V+ VLD + + Y Sbjct: 20 PLRALGLDIEAVEITPAGKRRILRVAVDKDGGVTLDEVAEATREVNRVLDGSEVMGEQPY 79 Query: 73 NLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTVEGK 132 LEV+S G+DRPL H+ R G ++++A + R G I + E +T+ V G Sbjct: 80 TLEVTSRGVDRPLTLPRHWRRNAGR----LVKVAFADGRAATGRILDSNEEQVTLDVGGT 135 Query: 133 DEVFALSNIQKA 144 + A + ++KA Sbjct: 136 RQQVAYAEVKKA 147 >UniRef50_C3XMY5 Putative uncharacterized protein n=1 Tax=Helicobacter winghamensis ATCC BAA-430 RepID=C3XMY5_9HELI Length = 150 Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/146 (32%), Positives = 77/146 (52%), Gaps = 7/146 (4%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSE---DGINVDDCADVSHQV 58 T+ L + I VE+LGF+L + ++ LRI I +++DDC +VS + Sbjct: 2 TISPNLEDKIKVLVESLGFDLYDVLTLKENENQILRICITKNMESKSVSLDDCQEVSLAL 61 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 S +LDVE P Y LEVSSPG++R L T HY + E + + + +++++G + Sbjct: 62 SPLLDVEMPDFEKYYLEVSSPGIERVLKTLAHYKGAINELIKVKTLQEIAGKKEFKGKLV 121 Query: 119 AVDGEMITVTVEGKDEVFALSNIQKA 144 +V E + V G + L+ I+KA Sbjct: 122 SV-SESVLVLENGVE--IPLNAIKKA 144 >UniRef50_P59821 Ribosome maturation factor rimP n=2 Tax=Helicobacter RepID=RIMP_HELHP Length = 157 Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 84/158 (53%), Gaps = 19/158 (12%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYI---------DSEDG--INVDDC 51 L Q I LG + I+F + LR+ I D ++G +++ DC Sbjct: 2 LSQHTQARIEQLAATLGLYIYDIDFFKEDNRPILRVSITRKAPMQKQDCKNGLAVSLQDC 61 Query: 52 ADVSHQVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRR 111 +VS +S +LDVED YNLEVSSPGL+R L +HY +GE+V++ L ++ Sbjct: 62 QNVSELISPLLDVEDENLKDYNLEVSSPGLERVLKKPQHYIYSLGEKVSIKL----MDKS 117 Query: 112 KWQGVIKAVDGEMITVTVEGKDEV--FALSNIQKANLV 147 +G++ V+ E ++++++ E+ F+ ++++K +V Sbjct: 118 VIEGILHDVN-ENVSISIDTGKEILSFSFADMKKIKVV 154 >UniRef50_A4X4N4 Ribosome maturation factor rimP n=3 Tax=Actinomycetales RepID=RIMP_SALTO Length = 220 Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 70/144 (48%), Gaps = 16/144 (11%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVS 59 +++ +L E++ V G++L + R GR +++ +D++ GI++D ADVS VS Sbjct: 35 LASRRARLHEVVEPVVGEAGYDLEELSISRAGRRHVVQVIVDADGGIDLDAVADVSRAVS 94 Query: 60 AVLDVE-----DPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQ 114 A LD D + Y LEVSSPG+ RPL H+ R G V + +R Sbjct: 95 AALDAAEEARGDIVAGEYQLEVSSPGVSRPLTLPRHWRRNAGRLVRVTVR---------- 144 Query: 115 GVIKAVDGEMITVTVEGKDEVFAL 138 G A D ++ VE DE L Sbjct: 145 GGPDAGDRQLTGRVVEADDEQVVL 168 >UniRef50_C1XJ52 Uncharacterized conserved protein n=1 Tax=Meiothermus ruber DSM 1279 RepID=C1XJ52_MEIRU Length = 153 Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/135 (35%), Positives = 73/135 (54%), Gaps = 12/135 (8%) Query: 7 KLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSED--GINVDDCADVSHQVSAVLD- 63 ++ E + AP LG+E++ G+ L + I+ +D I++ D + +SA LD Sbjct: 11 QVAESVLAP---LGYEVLEAGLKSGKNPVLLVRIERKDEVPISIADLERANRALSAHLDT 67 Query: 64 VEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGE 123 +E + Y L+V SPG DRPLFTA H+ RF G +V +R N + G I AV G+ Sbjct: 68 LEALLPARYLLQVESPGADRPLFTARHFERFAGLKVR--VRSPQGN---FTGRIGAVRGD 122 Query: 124 MITVTVEGKDEVFAL 138 M+ +E KDE +L Sbjct: 123 MVEFLLE-KDETRSL 136 >UniRef50_C7RGN7 Putative uncharacterized protein n=3 Tax=Anaerococcus RepID=C7RGN7_ANAPD Length = 147 Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/103 (38%), Positives = 59/103 (57%), Gaps = 3/103 (2%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIRGRTST--LRIYIDSEDGINVDDCADVSHQVSAV 61 L ++L E+ A +E LG+ELV IEF +G+ + L +I ++DGI ++DC VS + Sbjct: 3 LTKRLKEIFEADIENLGYELVDIEF-KGQKNNKILTFFIYNKDGITIEDCEKVSAFLDEK 61 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLR 104 LD D I +Y LEVSS L RP+ T R E + + L+ Sbjct: 62 LDEIDIIKDSYYLEVSSQDLSRPIKTDRDLERNKDELLKIKLK 104 >UniRef50_A1ZEG3 15 kDa protein n=3 Tax=Sphingobacteriales RepID=A1ZEG3_9SPHI Length = 152 Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 69/132 (52%), Gaps = 4/132 (3%) Query: 5 EQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDV 64 E+KLT +I +E F + I + + L + ID + G+++D CA +S + ++ Sbjct: 4 EEKLTTLIKEHLEPEYFLIDVILKNQKPKAKLTVLIDGDQGVSIDRCATLSRWLGKYIEE 63 Query: 65 EDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEM 124 E+ I AY LEVSSPG+D PL Y + +G +V + L GV++ V+ ++ Sbjct: 64 ENLIEGAYTLEVSSPGVDLPLKNQRQYIKNIGRKVKVSLNEGGNK----TGVLEKVEDKL 119 Query: 125 ITVTVEGKDEVF 136 I + E K ++ Sbjct: 120 IVIQPEKKGKII 131 >UniRef50_A6LMV9 Ribosome maturation factor rimP n=1 Tax=Thermosipho melanesiensis BI429 RepID=RIMP_THEM4 Length = 147 Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 72/149 (48%), Gaps = 9/149 (6%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIR--GRTSTLRIYIDSE-DGINVDDCADVSHQ 57 M + ++ ++ E EL +++ GR L I ID+ D I+ DC +VS + Sbjct: 1 MKDIVSQVKDIAQKICEEFHLELFDVKYYNKSGRW-FLEIIIDNPYDYISTKDCENVSRK 59 Query: 58 VSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI 117 + LD + I Y L VSSPGL+RPL + + RF G++ + R + G I Sbjct: 60 LEFELDKINIIPNKYYLTVSSPGLNRPLRNVKDFERFTGKKAKIKTR-----ENTYIGYI 114 Query: 118 KAVDGEMITVTVEGKDEVFALSNIQKANL 146 K V +IT +GK F I+KANL Sbjct: 115 KNVVDNIITFETDGKFIEFKFEEIKKANL 143 >UniRef50_A3HY55 Putative uncharacterized protein n=1 Tax=Algoriphagus sp. PR1 RepID=A3HY55_9SPHI Length = 157 Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 62/104 (59%), Gaps = 1/104 (0%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFI-RGRTSTLRIYIDSEDGINVDDCADVSHQVS 59 MS L+Q + E++ + +V + + + + L I ID++ G+NV CA+VS V+ Sbjct: 1 MSELKQAIEEIVEKHLPDESHFVVEVNLVPKSGKTVLSILIDADQGLNVQTCANVSRAVA 60 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVL 103 L+ ++ ++ AY LEVSSPG+D PL + + + +G E+ ++L Sbjct: 61 EELEAKELMSEAYILEVSSPGVDYPLSSRRQFQKNIGRELKVLL 104 >UniRef50_C9Z253 Putative uncharacterized protein n=4 Tax=Streptomyces RepID=C9Z253_STRSW Length = 169 Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/108 (37%), Positives = 62/108 (57%), Gaps = 5/108 (4%) Query: 1 MSTLE-QKLTEMITAPVEALGFEL--VGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQ 57 MST + ++L E++ V + G +L + ++ + GR LR+ +DS++G ++D ADVS Sbjct: 1 MSTTQSERLRELLEPLVRSQGLDLEEIAVDSV-GRKRVLRVVVDSDEGADLDAVADVSRA 59 Query: 58 VSAVLDVEDPITVA-YNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLR 104 +SA LD D + + Y LEV +PG +R L HY R V V LR Sbjct: 60 LSAKLDETDAMGQSEYTLEVGTPGAERALTEHRHYRRAVDRLVKFTLR 107 >UniRef50_A4FM36 Ribosome maturation factor rimP n=4 Tax=Actinomycetales RepID=RIMP_SACEN Length = 185 Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 76/132 (57%), Gaps = 13/132 (9%) Query: 7 KLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVE 65 +L ++ V A GF+L ++ + GR +++ +D+E+G+ +D+ +++S VS VLD Sbjct: 12 RLEPVVAEAVSAAGFDLEELDVQQAGRRRLVKVVVDAEEGVGLDEISEISRAVSKVLDAH 71 Query: 66 DPITV-AYNLEVSSPGLDRPLFTAEHY--ARF------VGEEVTLVLRMAVQNRRKWQGV 116 + + +Y LEV+SPG+DRPL H+ AR+ + + LV+R+ + +GV Sbjct: 72 EHVLAGSYTLEVTSPGVDRPLTRPRHWRRARYRLVRVRLADGSDLVVRVGEADD---EGV 128 Query: 117 IKAVDGEMITVT 128 + DGE+ T+ Sbjct: 129 VVLADGEIRTLA 140 >UniRef50_A0RQZ2 Ribosome maturation factor rimP n=2 Tax=Epsilonproteobacteria RepID=RIMP_CAMFF Length = 140 Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 70/132 (53%), Gaps = 8/132 (6%) Query: 16 VEALGFELVGIEFIR--GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPITVAYN 73 V G +L E + GR R+YI G+++++C VS +S + DV P++ + Sbjct: 8 VSQCGVDLYDAEVVNENGRV-IYRVYITKNGGVSLEECEAVSKLLSPIYDVMPPVSGEWI 66 Query: 74 LEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTVEGKD 133 LEVSSPGL+R L EH+ +GE ++L ++ + +G I +V + I + ++ + Sbjct: 67 LEVSSPGLERKLSKIEHFTLSIGEFAKIIL----NDKTEIKGKIVSVKDDNICINIKNNE 122 Query: 134 EV-FALSNIQKA 144 + NI+KA Sbjct: 123 SIEVKFENIKKA 134 >UniRef50_C5BWS6 Ribosome maturation factor rimP n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=RIMP_BEUC1 Length = 162 Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 43/115 (37%), Positives = 57/115 (49%), Gaps = 8/115 (6%) Query: 31 GRTSTLRIYIDSEDG---INVDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGLDRPLFT 87 GR +R+ +D DG + +D AD S VSA LD D +T Y LEVS+PG DRPL Sbjct: 37 GRRRRVRVTLDLADGPGALGSNDLADASRAVSAALDDADVVTGPYVLEVSTPGTDRPLTQ 96 Query: 88 AEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITV-TVEGKDEVFALSNI 141 H+ R G VTL L G + + D + I V T G FA +++ Sbjct: 97 PRHFRRAQGRLVTLTLAAGTH----VSGRLLSADDDGIHVRTDAGATTTFAYADV 147 >UniRef50_Q0AYJ1 Ribosome maturation factor rimP n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=RIMP_SYNWW Length = 139 Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 37/110 (33%), Positives = 59/110 (53%), Gaps = 3/110 (2%) Query: 24 VGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGLD 82 V IE+ + + LR++ID ++G+++D C+ + + D E I Y LEVSSPGLD Sbjct: 14 VNIEYRKENKEQFLRVFIDKDNGVDLDMCSQANRAIKESFD-EQEIPYDY-LEVSSPGLD 71 Query: 83 RPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTVEGK 132 R L + RF G V + R + ++ G++ D E I V +EG+ Sbjct: 72 RVLKKERDWERFSGYRVRIKTRKSFPGPQRITGILLGFDSENIAVELEGE 121 >UniRef50_Q30SS4 Ribosome maturation factor rimP n=2 Tax=Campylobacterales RepID=RIMP_SULDN Length = 149 Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 75/142 (52%), Gaps = 12/142 (8%) Query: 12 ITAPVEALGFELVGIEFIR-GRTSTLRIYIDS-------EDGINVDDCADVSHQVSAVLD 63 I + V++L EL I R G S R+ + S + G+++D+C +S +S +LD Sbjct: 7 IESFVKSLDLELYEISVARDGDDSIYRVNVLSTQIEDGKKKGVSLDECVHLSRLISPLLD 66 Query: 64 VEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGE 123 V P++ Y LEV +PG++R + T + + +GE V L L+ ++ K +G++ V+ Sbjct: 67 VTPPMSGEYRLEVGTPGIERKVSTLKQFVLSIGERVALTLK----SKEKLKGLLLRVEES 122 Query: 124 MITVTVEGKDEVFALSNIQKAN 145 I + V+ ++ + I KA Sbjct: 123 NIYLDVDAEEVCVEFAQISKAK 144 >UniRef50_Q2S1N5 Ribosome maturation factor rimP n=1 Tax=Salinibacter ruber DSM 13855 RepID=RIMP_SALRD Length = 155 Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 37/102 (36%), Positives = 59/102 (57%), Gaps = 7/102 (6%) Query: 1 MSTLEQKLTEMITAPVEAL----GFELVGIEFIRGRTST--LRIYIDSEDGINVDDCADV 54 M+ +Q L + ++ E + + LV +E +RG T + +YIDSE+ + DD A + Sbjct: 1 MNPTQQHLADRVSGLTEEVIVGTDYFLVDVE-VRGHKGTRVVEVYIDSEEEVGHDDLALI 59 Query: 55 SHQVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVG 96 S ++ +LDVED + +Y LE+SSPG+ RPL Y + VG Sbjct: 60 SKEIGFLLDVEDVVDGSYKLELSSPGIKRPLTMPAQYRKNVG 101 >UniRef50_D1VB72 Putative uncharacterized protein n=1 Tax=Frankia sp. EuI1c RepID=D1VB72_9ACTO Length = 277 Score = 61.2 bits (147), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 35/80 (43%), Positives = 48/80 (60%), Gaps = 3/80 (3%) Query: 20 GFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDV--EDPITVAYNLEV 76 GF+L + R G S LR+ +D +DGI++D AD S +S +LD E + AY LEV Sbjct: 36 GFDLDDLSLSRAGSRSVLRVAVDRDDGIDLDAVADASRLISDLLDQVDEGGLAGAYVLEV 95 Query: 77 SSPGLDRPLFTAEHYARFVG 96 +SPG+DRPL H+ R G Sbjct: 96 TSPGVDRPLTEPRHWRRARG 115 >UniRef50_D0MI89 Putative uncharacterized protein n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MI89_RHOM4 Length = 160 Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 72/150 (48%), Gaps = 13/150 (8%) Query: 8 LTEMITAPVEALGFELVGIEF------IRGRTST--LRIYIDSEDGINVDDCADVSHQVS 59 L E I A VE + L G F +RGR + I+ID + G ++ D +S ++ Sbjct: 11 LIEQIRARVEEV---LQGTTFFLIDVVVRGRRGAHVVEIFIDGDRGPSLRDLEQLSREIG 67 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVL-RMAVQNRRKWQGVIK 118 +LD +D + Y L VSSPG+DRPL Y + VG E+ + L +A + +G ++ Sbjct: 68 FLLDSDDLLPGPYTLNVSSPGVDRPLVHPRQYPKHVGRELEVKLVAVADAPAERLRGTLQ 127 Query: 119 AVDGEMITVTV-EGKDEVFALSNIQKANLV 147 D E I + + +G IQ A + Sbjct: 128 RADAEAIELRLPDGSQRRLRYEEIQSARVC 157 >UniRef50_C0ZYA2 Ribosome maturation factor rimP n=2 Tax=Rhodococcus erythropolis RepID=RIMP_RHOE4 Length = 206 Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 77/145 (53%), Gaps = 11/145 (7%) Query: 6 QKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLD- 63 +++ E+I+ V A G+++ + G+ S +RI +DS+ GI +D A++S VS + D Sbjct: 7 ERVIELISELVHAQGYDVEDVVVTSAGKHSAVRIMVDSDAGIELDAAAEISRLVSELFDS 66 Query: 64 VEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGE 123 +E+ Y LEV+SPG+DRPL H+ R G + + L G I ++ + Sbjct: 67 LEEIGETPYTLEVTSPGIDRPLTLERHWRRARGRKARIDL-----AGETVVGRIGTLNDD 121 Query: 124 MITVTVEGKDEV----FALSNIQKA 144 + V + G+ + AL ++QKA Sbjct: 122 SVAVVIGGRGGLTVREIALGDVQKA 146 >UniRef50_B0VFB7 Putative uncharacterized protein n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VFB7_9BACT Length = 156 Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 1/121 (0%) Query: 27 EFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGLDRPLF 86 E + G+ + +Y+ G+ +D+CA S+ + L++ D I Y LEVSSPGL+RPL Sbjct: 28 EKMSGKGRIITVYLTKIGGVTLDECAAFSNALGKELEIFDLIPERYFLEVSSPGLERPLK 87 Query: 87 TAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTVEGKDEVFALSNIQKANL 146 HY + E+V + + A + R+ G + V+ + I + G +I +A Sbjct: 88 LKSHYVSAINEKVAVQFQ-AGEERKSIMGTLTEVNQDTIVIDDRGSVTEIPFKSIIRAKT 146 Query: 147 V 147 V Sbjct: 147 V 147 >UniRef50_C2FW05 Protein of hypothetical function DUF150 n=2 Tax=Sphingobacterium spiritivorum RepID=C2FW05_9SPHI Length = 156 Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 47/95 (49%), Gaps = 4/95 (4%) Query: 33 TSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYA 92 L I +D + GI +DDC +S V L+ E+ I AY LEVSSPG+D PL Y Sbjct: 33 NGVLEILVDGDSGIAIDDCVKISRHVGFHLEEENVIETAYRLEVSSPGIDSPLVLIRQYE 92 Query: 93 RFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITV 127 + +G V R+ K +G + V IT+ Sbjct: 93 KNIGRNV----RVKNHEGEKREGKLLDVTESAITI 123 >UniRef50_C3RL59 Putative uncharacterized protein n=4 Tax=Bacteria RepID=C3RL59_9MOLU Length = 167 Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 36 LRIYIDSEDG-INVDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARF 94 LRI+++ +G +++D C VS +S +D EDPI Y LEVSSPG+++PL T E Sbjct: 48 LRIFVEKNEGSLDMDTCVAVSEAISLKMDEEDPIKGEYYLEVSSPGVEKPLKTFEQVKAS 107 Query: 95 VGEEVTLVLRMAVQNRRKWQGVIKAVDGEMI 125 VG+ V + +G IK ++ E I Sbjct: 108 VGKYVYAKFINPTAGMDEVEGFIKTIEDETI 138 >UniRef50_B7IDT7 Ribosome maturation factor rimP n=1 Tax=Thermosipho africanus TCF52B RepID=RIMP_THEAB Length = 148 Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 8/149 (5%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFI-RGRTSTLRIYIDSE-DGINVDDCADVSHQV 58 M + K+ E+ + + EL I++ + L I ID+ D ++ DC ++S +V Sbjct: 1 MKEIVSKVKEIAESACKKYNLELFDIKYYNKSGKWFLEIVIDNPLDYVSTKDCENISREV 60 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 LD D I Y L VSSPGLDRPL + + + RF+ +V + L G IK Sbjct: 61 EFQLDKLDIIPQRYYLTVSSPGLDRPLRSIDDFKRFINNKVKIKLENET-----IIGYIK 115 Query: 119 AVDGEMITVTVEGKD-EVFALSNIQKANL 146 V +I + K + + I+KANL Sbjct: 116 DVKDSVIFLEENNKKIKEIKYNQIKKANL 144 >UniRef50_UPI0001BCD1F0 hypothetical protein AmarD1_13863 n=1 Tax=Aeromicrobium marinum DSM 15272 RepID=UPI0001BCD1F0 Length = 160 Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 37/107 (34%), Positives = 59/107 (55%), Gaps = 8/107 (7%) Query: 4 LEQKLTEMITAPVEALGFELVGIEF-IRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVL 62 ++++ T ++ + VE G EL + GR LR+ +DS+DG+ +D V+ ++AVL Sbjct: 1 MDERFTALVRSCVEPEGLELDDLTISAAGRKRVLRVALDSDDGVGIDQITAVTRALNAVL 60 Query: 63 DVEDPITVA------YNLEVSSPGLDRPLFTAEHYARFVGEEVTLVL 103 D +DP VA Y LEV+S G+ PL + H+ R G V + L Sbjct: 61 D-DDPAAVAALGGTPYTLEVTSRGVSSPLTSPRHWRRNHGRLVKVEL 106 >UniRef50_C6VUJ7 Putative uncharacterized protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VUJ7_DYAFD Length = 160 Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 41/67 (61%) Query: 38 IYIDSEDGINVDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGE 97 I +DS++GI + C +S +++ L+ + T AY LEVSSPGLD+PL Y + VG Sbjct: 38 ILVDSDEGITIQQCTSISRRLAKQLEELEVFTQAYTLEVSSPGLDQPLLLPRQYKKNVGR 97 Query: 98 EVTLVLR 104 + + L+ Sbjct: 98 NLKITLK 104 >UniRef50_C1A8N5 Ribosome maturation factor rimP n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=RIMP_GEMAT Length = 155 Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 47/130 (36%), Positives = 66/130 (50%), Gaps = 16/130 (12%) Query: 11 MITAPVEALGFELVGIEFIRGRTST---LRIYIDS--EDGINVDDCADVSHQVSAVLDVE 65 ++T + LGF+LV E RG + L I ID E+ + +DDCA VS + A L+ Sbjct: 8 IVTQELAGLGFDLV--ELRRGGSRARPVLEIRIDRRDEEKVTIDDCARVSRALEARLEAA 65 Query: 66 DPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMI 125 + Y LEVSSPG DRPL A + RFVG T+ + ++ + E++ Sbjct: 66 ALVGEQYVLEVSSPGADRPLRHAADWRRFVGRRATVTSGLLAGGKQ---------EVEIV 116 Query: 126 TVTVEGKDEV 135 VT EG EV Sbjct: 117 AVTGEGGAEV 126 >UniRef50_C5RBB8 Putative uncharacterized protein n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RBB8_WEIPA Length = 235 Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 50/152 (32%), Positives = 84/152 (55%), Gaps = 12/152 (7%) Query: 7 KLTEMITAPVEAL----GFELVGIEFIRGRTS-TLRIYIDSEDG-INVDDCADVSHQVSA 60 K+TE + A ++ + GF+L + + + + LR+ +D DG IN+DD ++ +S Sbjct: 10 KVTENVQAILKPILAKKGFDLWDVLYEKQDSDFVLRVLVDRVDGEINMDDLVMLTEVISD 69 Query: 61 VLDV--EDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQG-VI 117 LD+ DP AY L+VSSPG DR L ++ VG+ + ++L V K+ G ++ Sbjct: 70 ELDMITPDPFPQAYLLDVSSPGADRELQQPGNFVWAVGKFIEVILNNPVAGLEKFTGQLV 129 Query: 118 KAVDGEM-ITVTVEGKDEVFA--LSNIQKANL 146 +D ++ I V ++ K ++ L NIQKANL Sbjct: 130 SFLDDKLTIDVALKTKHQLIEIDLDNIQKANL 161 >UniRef50_A8R7M6 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8R7M6_9FIRM Length = 181 Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 33/75 (44%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Query: 31 GRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAE 89 G+ L+I I +DG +++D CA+VS ++SA LD ED I Y LEV SPG +R L T E Sbjct: 57 GKNKILQIAIMRKDGTMDIDTCAEVSEKISAKLDEEDFIQSEYFLEVCSPGAERELKTYE 116 Query: 90 HYARFVGEEVTLVLR 104 +GE V + L+ Sbjct: 117 QIKDAIGEFVYVKLK 131 >UniRef50_Q0EZ70 Putative uncharacterized protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZ70_9PROT Length = 158 Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 1/95 (1%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIRG-RTSTLRIYIDSEDGINVDDCADVSHQVSAVL 62 +E K+ ++ V+ LG E++ I G L++ +D G++ +S ++ L Sbjct: 1 MESKIESLLRPIVDELGVEIIKISLGGGGHNPLLKVVVDKAGGVDSGMLERISRGLALQL 60 Query: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGE 97 DVED I A+ LEV++PGLD PL T + R+ GE Sbjct: 61 DVEDLIKSAFRLEVTTPGLDWPLTTNADFERYRGE 95 >UniRef50_B0S1E8 Ribosome maturation factor rimP n=2 Tax=Finegoldia magna RepID=RIMP_FINM2 Length = 154 Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 34/133 (25%), Positives = 71/133 (53%), Gaps = 2/133 (1%) Query: 16 VEALGFELVGIEFIRGR-TSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVEDPITVAYN 73 ++ G E +E+ + L YI+ +DG I++DDC +++++S LD DPI+ Y Sbjct: 18 IKDTGIEFYDVEYSNNNGKNILTFYIEKDDGLISIDDCELINNKISDKLDEIDPISDPYY 77 Query: 74 LEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTVEGKD 133 LE++S + P + + + +G V + L + ++++++G++ + I++ +E K+ Sbjct: 78 LEIASVDITTPFTRDKDFKKNLGNVVIVNLYQKLDSKKEFKGILTDFNDTEISLELEKKE 137 Query: 134 EVFALSNIQKANL 146 SNI L Sbjct: 138 IKIERSNISSIKL 150 >UniRef50_Q1AW57 Ribosome maturation factor rimP n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=RIMP_RUBXD Length = 152 Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 70/130 (53%), Gaps = 8/130 (6%) Query: 20 GFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVEDPITVAYNLEVSS 78 G ELV F RG TL +D E G ++ + CA + V+ L+ E + +EVSS Sbjct: 22 GTELVEARFSRGPLLTL--LVDREGGPVDHEFCARIISIVAPALEEEG---YSGMIEVSS 76 Query: 79 PGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV--DGEMITVTVEGKDEVF 136 PG++RPL H+ RF+G V + + V RR + GVI+ V G ++ ++ +G++ Sbjct: 77 PGIERPLTRPSHFRRFIGRRVRVRVGEPVDGRRNFTGVIERVADAGFVLRLSEDGEEVEL 136 Query: 137 ALSNIQKANL 146 ++ +A+L Sbjct: 137 PFGSVTRAHL 146 >UniRef50_C1RGC3 Uncharacterized conserved protein n=1 Tax=Cellulomonas flavigena DSM 20109 RepID=C1RGC3_9CELL Length = 177 Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 5/97 (5%) Query: 8 LTEMITAPVEALGFELVGIEFI-RGRTSTLRIYIDSEDG----INVDDCADVSHQVSAVL 62 + E++ V G L G+E GR++ +R+ +D D +++D DV+ VS L Sbjct: 1 MREVVETAVTGAGLLLDGLEVAGSGRSTVVRVTVDLADDDPGTLDLDRVGDVTRAVSDAL 60 Query: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEV 99 D D + AY LEV SPG +RPL A H+ R G V Sbjct: 61 DAADVLPGAYTLEVGSPGAERPLTLARHWRRARGRTV 97 >UniRef50_B3QUN0 Ribosome maturation factor rimP n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=RIMP_CHLT3 Length = 182 Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 67/129 (51%), Gaps = 13/129 (10%) Query: 23 LVGIEFIRGRT-STLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPITV----AYNLEVS 77 LV IE +T + ++ D++ GI+V++C +S +SA LD + + + L VS Sbjct: 34 LVDIEVHSNKTIDIIEVFADTDSGISVENCKFLSKHISAELDASEEMQALLPRHFKLVVS 93 Query: 78 SPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTVEGKDEV-F 136 SPGL RPL Y + +G ++++ QN G IK +DG I++ E + + Sbjct: 94 SPGLSRPLTMNRQYKKNIGR----LMQVTYQNA---DGEIKTIDGRFISLEEEAEASITL 146 Query: 137 ALSNIQKAN 145 ++ IQK+ Sbjct: 147 DITKIQKSK 155 >UniRef50_C4DMD6 Uncharacterized conserved protein n=4 Tax=Actinomycetales RepID=C4DMD6_9ACTO Length = 164 Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/100 (37%), Positives = 53/100 (53%), Gaps = 10/100 (10%) Query: 31 GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDP-----ITVAYNLEVSSPGLDRPL 85 GR + +R+ +D + G+++D A VS +S LD + T +Y LEVSSPG+DRPL Sbjct: 35 GRRTLVRVLVDRDAGVDLDAIASVSRVLSKALDKSEADDGPFATNSYTLEVSSPGVDRPL 94 Query: 86 FTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMI 125 H+ R VG V++ L A R I A D E + Sbjct: 95 TLPRHWRRNVGRLVSVRLSDATVTAR-----IHAADDENV 129 >UniRef50_D2QL24 Putative uncharacterized protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QL24_9SPHI Length = 170 Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 72/130 (55%), Gaps = 9/130 (6%) Query: 7 KLTEMITAPVEALGFELVGIEFIRGRTS---TLRIYIDSEDGINVDDCADVSHQVSAVLD 63 K+TE++ ++ F +V I+ + GR + I +DS+ GI +DDCAD+S ++ +D Sbjct: 6 KITELLQPYLKNDLFYIVDIQ-VAGRQGGRLKVTILLDSDAGITIDDCADISRRLGGQMD 64 Query: 64 VEDPI-TVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 + + LE+SSPG+D PL + + R VG ++ + L V + GV+++V Sbjct: 65 EMNFFGDSPFTLEISSPGVDYPLTFSRQFVRNVGRQLIVTLTDGVIRK----GVLESVAE 120 Query: 123 EMITVTVEGK 132 + I + +E + Sbjct: 121 DHIVLDIEAE 130 >UniRef50_Q04GN4 Ribosome maturation factor rimP n=2 Tax=Oenococcus oeni RepID=RIMP_OENOB Length = 156 Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 60/111 (54%), Gaps = 4/111 (3%) Query: 23 LVGIEFIRGRTSTLRIYIDSED--GINVDDCADVSHQVSAVLD-VE-DPITVAYNLEVSS 78 L + F G + L I ID +D I ++ ++V+ +S LD VE DP YNL++SS Sbjct: 24 LWDLSFFGGSPAVLTILIDGQDHQAIRMNQISEVTSLISDALDKVEPDPFPDRYNLDISS 83 Query: 79 PGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTV 129 PG+DR + T EH +G+ + L L + + +G++K+ I++ V Sbjct: 84 PGIDRSIKTDEHLDWALGQPIKLNLFEKIDGSKSAEGILKSFSDLEISLEV 134 >UniRef50_C9PWZ4 Putative uncharacterized protein n=8 Tax=Prevotella RepID=C9PWZ4_9BACT Length = 167 Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/101 (34%), Positives = 56/101 (55%), Gaps = 11/101 (10%) Query: 34 STLRIYIDSEDGINVDDCADVSHQVSAVL--DVEDPITVAYNLEVSSPGLDRPLFTAEHY 91 S + + ID DG+ ++DC ++S + L D ED Y LEV S GL +P + Y Sbjct: 44 SRIVVEIDHADGVWIEDCVELSRFIEEHLNRDEED-----YELEVGSAGLGQPFKVPQQY 98 Query: 92 ARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTVEGK 132 F+G+EV ++ + + +K++G +K+VDG VTV K Sbjct: 99 VNFIGKEVEVLDK----DGKKYKGTLKSVDGNDFVVTVNEK 135 >UniRef50_A9BH33 Ribosome maturation factor rimP n=1 Tax=Petrotoga mobilis SJ95 RepID=RIMP_PETMO Length = 157 Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 67/148 (45%), Gaps = 6/148 (4%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIRG--RTSTLRIYIDSEDG-INVDDCADVSHQVSA 60 ++Q + E LG E+ I I+G + L + ID DG +++ DC S Sbjct: 7 IKQLIWEKADNVASKLGLEIFDI-LIKGSNKNKILEVVIDKADGYVSIGDCERFSKAFDP 65 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 LD D +Y L VSSPGLDR L Y RF G+ +L+ G I + Sbjct: 66 WLDEIDLFDKSYELVVSSPGLDRKLRGKADYERFKGKLAKFILKGKETKHPVVIGYIDEI 125 Query: 121 DGEMITVTVEGKDEVFA--LSNIQKANL 146 + I +T + ++F L+ I KANL Sbjct: 126 LEDQIKITEKDSGKLFNIDLNEIDKANL 153 >UniRef50_C8PR25 Putative uncharacterized protein n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PR25_9SPIO Length = 186 Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 74/137 (54%), Gaps = 15/137 (10%) Query: 16 VEALGFELVGIEFIRGRTSTL-RIYIDSEDGINVDDCADVSH----QVSAVLDVEDPITV 70 V LG++LV ++ + +++ L + I S++G+ +DDC+ V + +L+ +D Sbjct: 56 VTGLGYKLVDLQIVHQKSAWLVKAVIYSKNGVGIDDCSKVHRALLSRAEVLLNSQDI--- 112 Query: 71 AYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKW-QGVIKAVDGEMITVTV 129 +EVSSPGL+R + A + F+GE + VL ++ + W +G + A D I + + Sbjct: 113 --QMEVSSPGLNRVIKNAAEFQAFIGENIK-VLEVSCPD---WLEGELLAADSTGIRLNI 166 Query: 130 EGKDEVFALSNIQKANL 146 G+ ++I+KA L Sbjct: 167 SGEQRDIRYADIKKAKL 183 >UniRef50_B7CAI1 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAI1_9FIRM Length = 173 Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/99 (35%), Positives = 54/99 (54%), Gaps = 2/99 (2%) Query: 8 LTEMITAPVEALGFELVGIEFIRGR-TSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVE 65 L E I + G L +E+I + T LR+ ++ EDG +++D CA S + +LD + Sbjct: 25 LKEWIEEVLNENGCHLYDLEWITNQGTPLLRVSVEKEDGTMDLDTCASCSDVIGQMLDEK 84 Query: 66 DPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLR 104 D + Y LEV SPG +R L T E R VG+ V + ++ Sbjct: 85 DWYSHEYMLEVCSPGAERELRTDEEVQRAVGKYVFVKMK 123 >UniRef50_D1B5D8 Putative uncharacterized protein n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B5D8_THEAS Length = 150 Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 9/145 (6%) Query: 8 LTEMITAPVEALGFELVGIEFIRG-RTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVE 65 + I VE LG+ V ++ +R +R+ IDS D I DC VS +V +LD E Sbjct: 9 FKDRIRRLVEDLGYICVEVKLVRDLGGQVVRVTIDSPDAPIGHGDCEAVSRKVGELLDGE 68 Query: 66 DP--ITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV-DG 122 + Y LEVSSPG +RPL + + + RF G ++ R++ +K I V D Sbjct: 69 GEGFLKGRYYLEVSSPGPNRPLLSLDDFRRFKGSKI----RVSTGKGKKRTYFIDDVFDD 124 Query: 123 EMITVTVEGKDEVFALSNIQKANLV 147 M+ + EG++ V +++ L Sbjct: 125 GMVRLVHEGEELVCPWGDLKNPRLC 149 >UniRef50_B1MD92 Ribosome maturation factor rimP n=4 Tax=Mycobacterium RepID=RIMP_MYCA9 Length = 189 Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 41/65 (63%) Query: 29 IRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGLDRPLFTA 88 + GR S + + +DS+ +++D A +S SA+LD D AY LE+++PG+DRPL T Sbjct: 45 VAGRPSRIAVVVDSDTPVDLDAVAGLSRTASALLDEADTGWQAYELEITTPGVDRPLTTV 104 Query: 89 EHYAR 93 H+ R Sbjct: 105 AHFRR 109 >UniRef50_B8J1Y7 Ribosome maturation factor rimP n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=RIMP_DESDA Length = 258 Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 14/102 (13%) Query: 47 NVDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMA 106 ++ C ++S ++ L+VED I AY LEVS+PGL R F+ E +VG+ V L Sbjct: 89 TIEQCEEISRHLALALEVEDSIADAYVLEVSTPGLSRLFFSLEQMIPYVGDVVEARLHTP 148 Query: 107 VQN---------RRKWQGVIKAVDGEM-----ITVTVEGKDE 134 V + RR W+G + AV+ + +TV+ EG+ E Sbjct: 149 VASTDPAAHGGPRRVWRGTLVAVEDDAFVLAPVTVSPEGEVE 190 >UniRef50_C7NH15 Uncharacterized conserved protein n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NH15_KYTSD Length = 160 Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 13/107 (12%) Query: 6 QKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSE-----------DGINVDDCAD 53 +++ E+ +A V LG E+ + G+ S +R+ ++ + I +D A+ Sbjct: 8 ERVWELSSAAVAPLGLEVPDVVITPAGKRSVVRVLVEPALPVDDAGDTVLEPITLDQVAE 67 Query: 54 VSHQVSAVLDVEDPI-TVAYNLEVSSPGLDRPLFTAEHYARFVGEEV 99 + VS +D +DP Y LEVSSPG+DRPL + EH+ R VG V Sbjct: 68 ATELVSTGIDADDPFGEQPYTLEVSSPGVDRPLTSLEHFRRAVGRRV 114 >UniRef50_A6GK80 Putative uncharacterized protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GK80_9DELT Length = 174 Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 37/108 (34%), Positives = 52/108 (48%), Gaps = 16/108 (14%) Query: 10 EMITAPVEA-LGFELVGIEFI-RGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVE-- 65 E PV A +G+E + IE+ G+ LR+++DS G+ + DC + + LD Sbjct: 2 EAAIEPVCADMGYEALLIEWSGSGQRRVLRVFLDSPKGVTIADCTRMGRLIGNSLDAAEA 61 Query: 66 -------DPITVA-----YNLEVSSPGLDRPLFTAEHYARFVGEEVTL 101 +P A Y LEVSSPG+DRPL H+ VG V L Sbjct: 62 AVEAGEGNPALAALLAPGYTLEVSSPGVDRPLAKKRHFTAQVGGRVKL 109 >UniRef50_B2GKR8 Ribosome maturation factor rimP n=1 Tax=Kocuria rhizophila DC2201 RepID=RIMP_KOCRD Length = 163 Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 5/86 (5%) Query: 16 VEALGFELVGIEFI-RGRTSTLRIYIDSEDG---INVDDCADVSHQVSAVLDVEDPIT-V 70 V A G L E +G T TL++ +D DG + +D A V+ ++S LD +DP+ Sbjct: 17 VAAAGLHLEECELKGQGATRTLQVLVDLPDGTEALGLDRVAAVAQEISDALDRDDPVPGP 76 Query: 71 AYNLEVSSPGLDRPLFTAEHYARFVG 96 Y LEVSSPG R L T H+ R VG Sbjct: 77 PYELEVSSPGATRTLETPRHWRRTVG 102 >UniRef50_Q73NP4 Ribosome maturation factor rimP n=1 Tax=Treponema denticola RepID=RIMP_TREDE Length = 148 Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 13/134 (9%) Query: 16 VEALGFELVGIEFIRGR-TSTLRIYIDSEDGINVDDCADVSH----QVSAVLDVEDPITV 70 VE LGF+LV + + + ++ I SE G+ + DC V ++ A++ +D Sbjct: 19 VEGLGFKLVDLNVLHKKDVWQVKAVIKSEKGVGIKDCTSVHRTLQPRIEALIGSQD---- 74 Query: 71 AYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTVE 130 +EVSSPG++R + A + FVGEE + ++ + R G+IK V+ E + + + Sbjct: 75 -VTMEVSSPGINRLVKRAVEFYAFVGEEAQ-IWDNSITDWR--HGIIKEVNSEGLVLNSD 130 Query: 131 GKDEVFALSNIQKA 144 +D +I+KA Sbjct: 131 NQDIQIPYQDIKKA 144 >UniRef50_A3PY72 Ribosome maturation factor rimP n=18 Tax=Mycobacterium RepID=RIMP_MYCSJ Length = 192 Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 75/154 (48%), Gaps = 15/154 (9%) Query: 5 EQKLTEMITAPVEALGFELVGIEFIRG-RTSTLRIYIDSEDGINVDDCADVSHQVSAVLD 63 ++++ E++ G+E+ + G R + + +D + +++D A +S S LD Sbjct: 15 QEQVKELLDGEFARAGYEIENVVIDGGARPPRITVVVDGDRPLDLDTVASLSRSASEQLD 74 Query: 64 VED---PITVA----YNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGV 116 D P A Y LEV+SPG+DRPL T +HY R G +V L L Q G Sbjct: 75 RVDESGPGVTADAATYVLEVTSPGVDRPLTTEKHYRRARGRKVELTLSDGSQ----LTGR 130 Query: 117 IKAV--DGEMITVTV-EGKDEVFALSNIQKANLV 147 I A+ DGE +++ V EG F++ + +V Sbjct: 131 IGALTADGESVSLVVREGARANFSVRELPLEGIV 164 >UniRef50_A8L6F1 Ribosome maturation factor rimP n=2 Tax=Frankia RepID=RIMP_FRASN Length = 308 Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/137 (35%), Positives = 67/137 (48%), Gaps = 34/137 (24%) Query: 20 GFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVED------------ 66 GF+L + R G S +R+ +D + GI++D AD S VSAVLD ED Sbjct: 48 GFDLEDVSVTRAGARSVVRVVVDRDGGIDLDAVADASRLVSAVLDGEDIGTDGAGGTGGS 107 Query: 67 ----------PITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGV 116 PI+ AY LEV+SPG+DRPL H+ R VG V + R+ GV Sbjct: 108 GGAAGGSGASPISGAYVLEVTSPGVDRPLVEPRHWRRAVGRLVVV---------RRADGV 158 Query: 117 IKAVDGEMITVTVEGKD 133 V+G +++ EG D Sbjct: 159 --EVEGRVLSADDEGAD 173 >UniRef50_Q11PK7 Ribosome maturation factor rimP n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=RIMP_CYTH3 Length = 167 Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 5/91 (5%) Query: 38 IYIDSEDGINVDDCADVSHQVSAVLDVEDPI-TVAYNLEVSSPGLDRPLFTAEHYARFVG 96 + +D + GI +D+C + S + +++ + AY LEVSSPG+DRPL + Y R +G Sbjct: 40 VILDKDSGILIDECGEFSRALGNLIEENNLFGDNAYVLEVSSPGMDRPLLVSRQYKRRIG 99 Query: 97 EEVTLVLRMAVQNRRKWQGVIKAVDGEMITV 127 ++ +L Q + V+++V E + V Sbjct: 100 NTLSFLLNDGTQ----FDAVLESVSEEGVVV 126 >UniRef50_D1C050 Putative uncharacterized protein n=1 Tax=Xylanimonas cellulosilytica DSM 15894 RepID=D1C050_XYLCX Length = 192 Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 8/150 (5%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYID-SEDGINV--DDCAD-VSH 56 S + + ++ V+A G L + R G S +R+ +D ED + D D VS Sbjct: 14 SATAEAVRRVVAPAVDAEGLFLESVSATRAGARSVVRVTVDLPEDAVGSLGSDALDAVSR 73 Query: 57 QVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGV 116 +SA LD +D + Y LEVS+PG RPL H+ R VTL L + + Q V Sbjct: 74 AISAALDADDVVRGVYVLEVSTPGTSRPLTELRHFKRARTRLVTLSLVDGGEAEGRLQDV 133 Query: 117 IKAVDGEMITVTVEGKDEVFALSNIQKANL 146 + DG+ + + G+ F ++ +++ + Sbjct: 134 VAGTDGDELVLEDGGR---FPVATVRQGRV 160 >UniRef50_C7QDY6 Putative uncharacterized protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QDY6_CATAD Length = 203 Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 35/96 (36%), Positives = 50/96 (52%), Gaps = 8/96 (8%) Query: 41 DSEDGINVDDCADVSHQVSAVLDVEDPITV----AYNLEVSSPGLDRPLFTAEHYARFVG 96 D +DG+++D +D++ VS VLD + + V Y LEV SPG DRPL +H+ R G Sbjct: 47 DGDDGVSLDAVSDITRVVSDVLDAPEGVAVMGEQPYVLEVGSPGTDRPLTLPKHWRRAKG 106 Query: 97 EEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTVEGK 132 V +LR N G + D E + + V GK Sbjct: 107 RLVRALLR----NGGDVTGRVLDSDDEGVLLEVPGK 138 >UniRef50_B3QQI4 Ribosome maturation factor rimP n=2 Tax=Chlorobaculum RepID=RIMP_CHLP8 Length = 170 Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 29/108 (26%), Positives = 63/108 (58%), Gaps = 6/108 (5%) Query: 29 IRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLD-VEDPITVA---YNLEVSSPGLDRP 84 +RG + + I+++ G+++D CA +S + A L+ E+ + +A + L VSSPG+ P Sbjct: 31 VRGGGRIIELTIEADKGVSIDQCAKLSRTIRARLEACEENLMLAAGDFELMVSSPGIGEP 90 Query: 85 LFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI--KAVDGEMITVTVE 130 + + Y R +G ++ +V + R++ +G + +++GE ++T+E Sbjct: 91 IRVSRQYLRHLGRKMKVVYLDSEGERKEIEGKLTEASLEGEEPSITIE 138 >UniRef50_UPI0001C338FD hypothetical protein UCYN_07210 n=1 Tax=cyanobacterium UCYN-A RepID=UPI0001C338FD Length = 125 Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 60/112 (53%), Gaps = 2/112 (1%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIRGRT-STLRIYI-DSEDGINVDDCADVSHQVSAV 61 L Q++ ++ T ++ +G ++V + F + S LR I + + I++DDCA VS + ++ Sbjct: 5 LIQQIIDLTTPVIKEMGIDIVNVVFHTNKCPSILRFDISNPAENISLDDCAKVSRTLESI 64 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKW 113 LD I AY LEVSSPG+ + L + + F G + ++ N+ + Sbjct: 65 LDETTIIPHAYVLEVSSPGISQILNSERDFTTFQGFAIGIMTSPPYLNKERM 116 >UniRef50_C7M5A8 Putative uncharacterized protein n=2 Tax=Capnocytophaga RepID=C7M5A8_CAPOD Length = 155 Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 68/135 (50%), Gaps = 23/135 (17%) Query: 31 GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEH 90 G +T+R+ ID + G+ +DDC ++S + LD E + + LEV+S G P Sbjct: 29 GTDNTIRVTIDGDKGVGIDDCIELSRAIENSLDRE---AMDFALEVTSFGATEPFVMERQ 85 Query: 91 YARFVGEEVTLVLRMAVQNRRKWQGVIKAV-DGEMI--------------TVTVEGKDEV 135 YA+ G V ++ + + +G++K + +G +I +TV+ K+ + Sbjct: 86 YAKNAGRTV----QITTLDGKTHEGLLKGIAEGNVIIETETREPKPVGKGKITVK-KEHL 140 Query: 136 FALSNIQKANLVPHF 150 FAL++I++ ++ F Sbjct: 141 FALTDIKETKIIIKF 155 >UniRef50_A1BDE9 Ribosome maturation factor rimP n=1 Tax=Chlorobium phaeobacteroides DSM 266 RepID=RIMP_CHLPD Length = 173 Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 5/89 (5%) Query: 13 TAPVEALGFELVGIEFI-RGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPITVA 71 TA + G LV + G+ +++ + +D++ GI +D CA +S ++ L+VE+ Sbjct: 16 TAGTKGEGVYLVSLSIKGSGKGTSIEVLVDTDTGIRIDQCAFLSRRIRECLEVEEESDGM 75 Query: 72 ----YNLEVSSPGLDRPLFTAEHYARFVG 96 +NL+V+SPGL + + YAR VG Sbjct: 76 SGDDFNLDVASPGLGKAIILQRQYARHVG 104 >UniRef50_A3TRX7 Putative uncharacterized protein n=1 Tax=Janibacter sp. HTCC2649 RepID=A3TRX7_9MICO Length = 187 Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 11/112 (9%) Query: 46 INVDDCADVSHQVSAVLDVEDPI-TVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLR 104 +++D+ A +H VS LD D + Y LEV+SPG+ RPL A H+ R VG V L Sbjct: 57 LSLDEIASATHTVSDALDESDVLGEQPYTLEVTSPGVSRPLTAASHFRRNVGRLVVLT-- 114 Query: 105 MAVQNRRKWQGVIKAVDGEMITVTVEG------KDEVFALSNIQKANLVPHF 150 Q+ G I + +T+ V +DE+FA + I +A++ F Sbjct: 115 --PQDGEPVTGRIVRAGDDDLTLLVPAVKKAPERDEIFAYAAIDRADVQVEF 164 >UniRef50_Q6A7M3 Ribosome maturation factor rimP n=2 Tax=Propionibacterium acnes RepID=RIMP_PROAC Length = 178 Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 76/155 (49%), Gaps = 13/155 (8%) Query: 6 QKLTEMITAPVEALGFELVGIEFI-RGRTSTLRIYIDSE----DGINVDDCADVSHQVSA 60 ++LT ++ V +G EL ++ + GR +R+ ID + G ++D+ ++ + ++S Sbjct: 4 ERLTRLLEPVVSQVGLELDRVDVVPAGRRRLVRVTIDGDGPDGHGPSLDEISEATAEISH 63 Query: 61 VLDVEDPITVA-YNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNR--RKWQGVI 117 LD + + Y LEVSS G+ PL HY R +G V L A + + + G I Sbjct: 64 CLDDSGAMGESPYTLEVSSRGVSTPLTQPRHYRRNIGHLVRFTLNPAEEQKSGETFDGRI 123 Query: 118 KAVDGEMITVTVEGKDE-----VFALSNIQKANLV 147 E++T+ VE ++ V+ +Q A++ Sbjct: 124 AEAGEEVVTLEVEAENSKPHKPVYTTREVQLADVA 158 >UniRef50_B1X3N5 Putative uncharacterized protein n=1 Tax=Paulinella chromatophora RepID=B1X3N5_PAUCH Length = 159 Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/100 (29%), Positives = 51/100 (51%) Query: 33 TSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYA 92 T ++I + SE ++++DC S QV LD + AY LEVSSPG++ L + Sbjct: 39 TLKIQISVSSERDVSINDCTVFSRQVEEALDNSSLLKEAYILEVSSPGINEELINDRDFR 98 Query: 93 RFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTVEGK 132 F G V +V+ + + +G++ D + I + + G+ Sbjct: 99 IFRGFPVEVVVNKSKTPTNRREGLLLERDDDSILINIRGR 138 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A4WEY5 Ribosome maturation factor rimP n=181 Tax=Proteo... 218 4e-56 UniRef50_A1ST43 Ribosome maturation factor rimP n=90 Tax=Gammapr... 203 1e-51 UniRef50_Q15V74 Ribosome maturation factor rimP n=8 Tax=Gammapro... 192 3e-48 UniRef50_C9R8Y0 Putative uncharacterized protein n=1 Tax=Ammonif... 189 2e-47 UniRef50_C8X0H0 Putative uncharacterized protein n=1 Tax=Desulfo... 188 4e-47 UniRef50_B5JRQ8 Putative uncharacterized protein n=2 Tax=Gammapr... 188 5e-47 UniRef50_Q31GK7 Ribosome maturation factor rimP n=2 Tax=Gammapro... 187 7e-47 UniRef50_B0TQA4 Ribosome maturation factor rimP n=34 Tax=Gammapr... 184 6e-46 UniRef50_Q2RJM9 Ribosome maturation factor rimP n=1 Tax=Moorella... 184 7e-46 UniRef50_D0L0S8 Putative uncharacterized protein n=1 Tax=Halothi... 184 1e-45 UniRef50_Q3J9B4 Ribosome maturation factor rimP n=4 Tax=Gammapro... 183 1e-45 UniRef50_Q5WT34 Ribosome maturation factor rimP n=5 Tax=Legionel... 183 1e-45 UniRef50_A9N8V8 Ribosome maturation factor rimP n=6 Tax=Coxiella... 182 2e-45 UniRef50_Q0A795 Ribosome maturation factor rimP n=1 Tax=Alkalili... 182 2e-45 UniRef50_B8FR10 Ribosome maturation factor rimP n=2 Tax=Desulfit... 180 2e-44 UniRef50_B1J268 Ribosome maturation factor rimP n=21 Tax=Gammapr... 180 2e-44 UniRef50_A6VU27 Ribosome maturation factor rimP n=18 Tax=Gammapr... 178 4e-44 UniRef50_B8GP00 Ribosome maturation factor rimP n=1 Tax=Thioalka... 178 4e-44 UniRef50_Q3AB94 Ribosome maturation factor rimP n=1 Tax=Carboxyd... 177 7e-44 UniRef50_B1I359 Ribosome maturation factor rimP n=4 Tax=Clostrid... 177 1e-43 UniRef50_B0K1E0 Ribosome maturation factor rimP n=18 Tax=Clostri... 177 1e-43 UniRef50_Q09BT8 YlxS n=1 Tax=Stigmatella aurantiaca DW4/3-1 RepI... 176 1e-43 UniRef50_A8PNL6 15 kDa protein n=1 Tax=Rickettsiella grylli RepI... 176 2e-43 UniRef50_A4XL73 Ribosome maturation factor rimP n=2 Tax=Clostrid... 175 3e-43 UniRef50_Q30WJ2 Ribosome maturation factor rimP n=1 Tax=Desulfov... 175 5e-43 UniRef50_B5YEH1 Ribosome maturation factor rimP n=2 Tax=Dictyogl... 174 7e-43 UniRef50_B9ZLN5 Putative uncharacterized protein n=1 Tax=Thioalk... 173 2e-42 UniRef50_B2A393 Ribosome maturation factor rimP n=1 Tax=Natranae... 172 3e-42 UniRef50_A7H9F0 Ribosome maturation factor rimP n=5 Tax=Myxococc... 172 3e-42 UniRef50_C6LLB2 Putative uncharacterized protein n=4 Tax=Clostri... 171 5e-42 UniRef50_B0THQ9 Ribosome maturation factor rimP n=1 Tax=Heliobac... 171 6e-42 UniRef50_C6D2F6 Putative uncharacterized protein n=3 Tax=Bacilla... 170 9e-42 UniRef50_A6NTX5 Putative uncharacterized protein n=1 Tax=Bactero... 168 6e-41 UniRef50_B8CW69 Ribosome maturation factor rimP n=1 Tax=Halother... 167 7e-41 UniRef50_D0LZ93 Putative uncharacterized protein n=1 Tax=Haliang... 167 8e-41 UniRef50_Q1NIJ0 Putative uncharacterized protein n=2 Tax=Deltapr... 167 1e-40 UniRef50_A1AML8 Ribosome maturation factor rimP n=8 Tax=Desulfur... 166 2e-40 UniRef50_A4BTQ0 Putative uncharacterized protein n=1 Tax=Nitroco... 166 2e-40 UniRef50_A1WXV3 Ribosome maturation factor rimP n=3 Tax=Gammapro... 165 2e-40 UniRef50_Q5F799 Ribosome maturation factor rimP n=27 Tax=Neisser... 165 3e-40 UniRef50_Q895K1 Ribosome maturation factor rimP n=1 Tax=Clostrid... 165 3e-40 UniRef50_A1AV97 Ribosome maturation factor rimP n=3 Tax=Bacteria... 165 5e-40 UniRef50_Q3A4B0 Ribosome maturation factor rimP n=3 Tax=Desulfur... 164 7e-40 UniRef50_B5EMC8 Ribosome maturation factor rimP n=2 Tax=Acidithi... 164 7e-40 UniRef50_C0GUB7 Putative uncharacterized protein n=1 Tax=Desulfo... 163 1e-39 UniRef50_A9VT54 Ribosome maturation factor rimP n=6 Tax=Bacillus... 163 1e-39 UniRef50_C4V3N9 Protein of hypothetical function DUF150 n=1 Tax=... 163 1e-39 UniRef50_A9HF10 Ribosome maturation factor rimP n=10 Tax=Acetoba... 163 1e-39 UniRef50_C3P5L9 Ribosome maturation factor rimP n=253 Tax=Firmic... 163 2e-39 UniRef50_C7LRI2 Putative uncharacterized protein n=1 Tax=Desulfo... 163 2e-39 UniRef50_C4Z5N3 Ribosome maturation factor rimP n=10 Tax=Bacteri... 162 2e-39 UniRef50_C7MNM1 Uncharacterized conserved protein n=4 Tax=Coriob... 162 3e-39 UniRef50_B4U6H1 Ribosome maturation factor rimP n=3 Tax=Aquifica... 162 3e-39 UniRef50_Q1GXD8 Ribosome maturation factor rimP n=16 Tax=Betapro... 162 4e-39 UniRef50_A9KNW8 Ribosome maturation factor rimP n=13 Tax=Clostri... 162 4e-39 UniRef50_B9E1J8 Ribosome maturation factor rimP n=15 Tax=Clostri... 161 6e-39 UniRef50_D1BM56 Putative uncharacterized protein n=4 Tax=Veillon... 160 8e-39 UniRef50_A8MHI0 Ribosome maturation factor rimP n=11 Tax=Clostri... 160 9e-39 UniRef50_C6C0D6 Ribosome maturation factor rimP n=1 Tax=Desulfov... 160 1e-38 UniRef50_B6IVF3 Ribosome maturation factor rimP n=1 Tax=Rhodospi... 160 1e-38 UniRef50_Q72EQ8 Ribosome maturation factor rimP n=3 Tax=Desulfov... 160 2e-38 UniRef50_Q2VZU7 Ribosome maturation factor rimP n=4 Tax=Alphapro... 159 2e-38 UniRef50_D2RKW8 Putative uncharacterized protein n=2 Tax=Acidami... 159 2e-38 UniRef50_Q67P90 Ribosome maturation factor rimP n=2 Tax=Clostrid... 159 3e-38 UniRef50_Q2LWU4 Ribosome maturation factor rimP n=1 Tax=Syntroph... 159 3e-38 UniRef50_A5EWZ1 Ribosome maturation factor rimP n=1 Tax=Dichelob... 159 3e-38 UniRef50_C8NBH5 BCR/YhbC family protein n=1 Tax=Cardiobacterium ... 158 4e-38 UniRef50_D1U698 Putative uncharacterized protein n=1 Tax=Desulfo... 158 5e-38 UniRef50_Q01W33 Ribosome maturation factor rimP n=1 Tax=Candidat... 158 5e-38 UniRef50_A8GW29 Ribosome maturation factor rimP n=13 Tax=Rickett... 157 8e-38 UniRef50_C9KKC0 Putative uncharacterized protein n=2 Tax=Veillon... 157 1e-37 UniRef50_C5VSJ6 Putative uncharacterized protein n=1 Tax=Clostri... 157 1e-37 UniRef50_Q1GCH5 Ribosome maturation factor rimP n=5 Tax=Rhodobac... 156 2e-37 UniRef50_C0QTL6 Ribosome maturation factor rimP n=4 Tax=Hydrogen... 155 3e-37 UniRef50_A0LHL6 Ribosome maturation factor rimP n=1 Tax=Syntroph... 155 3e-37 UniRef50_A1B584 Ribosome maturation factor rimP n=28 Tax=Bacteri... 155 4e-37 UniRef50_Q3IYN8 Ribosome maturation factor rimP n=10 Tax=Rhodoba... 154 6e-37 UniRef50_B0PH19 Putative uncharacterized protein n=1 Tax=Anaerot... 154 6e-37 UniRef50_A5FV18 Ribosome maturation factor rimP n=2 Tax=Acetobac... 154 7e-37 UniRef50_Q6AJY2 Ribosome maturation factor rimP n=1 Tax=Desulfot... 154 8e-37 UniRef50_A0LE22 Ribosome maturation factor rimP n=1 Tax=Magnetoc... 154 1e-36 UniRef50_D1Y7J0 Putative uncharacterized protein n=1 Tax=Pyramid... 153 1e-36 UniRef50_Q14K22 Ribosome maturation factor rimP n=15 Tax=Francis... 153 1e-36 UniRef50_A7HZ90 Ribosome maturation factor rimP n=1 Tax=Parvibac... 153 2e-36 UniRef50_Q0C5Z8 Ribosome maturation factor rimP n=1 Tax=Hyphomon... 153 2e-36 UniRef50_A9G896 Ribosome maturation factor rimP n=1 Tax=Sorangiu... 153 2e-36 UniRef50_B1CB57 Putative uncharacterized protein n=1 Tax=Anaerof... 152 2e-36 UniRef50_D1VSB6 Putative uncharacterized protein n=1 Tax=Peptoni... 152 3e-36 UniRef50_Q1IIT1 Ribosome maturation factor rimP n=1 Tax=Candidat... 152 4e-36 UniRef50_UPI0001C373AC hypothetical protein RflaF_02144 n=1 Tax=... 151 6e-36 UniRef50_B8FCY3 Ribosome maturation factor rimP n=1 Tax=Desulfat... 151 7e-36 UniRef50_A8ZZ67 Ribosome maturation factor rimP n=1 Tax=Desulfoc... 151 7e-36 UniRef50_B1LX00 Ribosome maturation factor rimP n=6 Tax=Methylob... 151 8e-36 UniRef50_Q2RMS3 Ribosome maturation factor rimP n=2 Tax=cellular... 150 1e-35 UniRef50_A8S8G3 Putative uncharacterized protein n=1 Tax=Faecali... 150 1e-35 UniRef50_Q7NFN6 Ribosome maturation factor rimP n=1 Tax=Gloeobac... 150 2e-35 UniRef50_A5VCZ9 Ribosome maturation factor rimP n=8 Tax=Sphingom... 150 2e-35 UniRef50_Q97I55 Ribosome maturation factor rimP n=1 Tax=Clostrid... 149 2e-35 UniRef50_D2LJ62 Putative uncharacterized protein n=1 Tax=Rhodomi... 149 2e-35 UniRef50_Q0SSD0 Ribosome maturation factor rimP n=16 Tax=Clostri... 149 2e-35 UniRef50_Q8RHJ4 Ribosome maturation factor rimP n=9 Tax=Fusobact... 149 2e-35 UniRef50_B6FZB3 Putative uncharacterized protein n=1 Tax=Clostri... 149 2e-35 UniRef50_D2Q1L3 Putative uncharacterized protein n=1 Tax=Kribbel... 149 3e-35 UniRef50_A8IG16 Ribosome maturation factor rimP n=3 Tax=Rhizobia... 149 4e-35 UniRef50_B5YJX5 Ribosome maturation factor rimP n=1 Tax=Thermode... 148 4e-35 UniRef50_Q11BD1 Ribosome maturation factor rimP n=6 Tax=Rhizobia... 148 5e-35 UniRef50_B9DPF1 Ribosome maturation factor rimP n=13 Tax=Bacilla... 148 5e-35 UniRef50_B2I724 Ribosome maturation factor rimP n=20 Tax=Xanthom... 148 6e-35 UniRef50_C9LLP6 Putative uncharacterized protein n=1 Tax=Dialist... 147 1e-34 UniRef50_B2IIK0 Ribosome maturation factor rimP n=19 Tax=Alphapr... 147 1e-34 UniRef50_A7VT55 Putative uncharacterized protein n=1 Tax=Clostri... 146 2e-34 UniRef50_B2KC93 Ribosome maturation factor rimP n=1 Tax=Elusimic... 146 2e-34 UniRef50_C6XRW8 Putative uncharacterized protein n=1 Tax=Hirschi... 145 5e-34 UniRef50_C6NSC0 Transcription termination protein NusA-like prot... 144 1e-33 UniRef50_B0T164 Ribosome maturation factor rimP n=6 Tax=Alphapro... 144 1e-33 UniRef50_Q6FF42 Ribosome maturation factor rimP n=21 Tax=Moraxel... 143 1e-33 UniRef50_C3WCG0 Putative uncharacterized protein n=6 Tax=Fusobac... 142 3e-33 UniRef50_C0W7C6 YhbC family protein n=1 Tax=Actinomyces urogenit... 142 4e-33 UniRef50_A4X4N4 Ribosome maturation factor rimP n=3 Tax=Actinomy... 142 4e-33 UniRef50_B9K861 Ribosome maturation factor rimP n=6 Tax=Thermoto... 141 6e-33 UniRef50_C7HSS3 Putative uncharacterized protein n=1 Tax=Anaeroc... 141 8e-33 UniRef50_B8DN15 Ribosome maturation factor rimP n=1 Tax=Desulfov... 140 9e-33 UniRef50_B9L6E1 Ribosome maturation factor rimP n=1 Tax=Nautilia... 140 1e-32 UniRef50_B1GZN4 Ribosome maturation factor rimP n=1 Tax=uncultur... 140 1e-32 UniRef50_A8ST27 Putative uncharacterized protein n=1 Tax=Coproco... 140 1e-32 UniRef50_Q47D92 Ribosome maturation factor rimP n=2 Tax=Betaprot... 140 1e-32 UniRef50_D1PLN8 Putative uncharacterized protein n=1 Tax=Subdoli... 140 1e-32 UniRef50_Q07V75 Ribosome maturation factor rimP n=14 Tax=Bradyrh... 140 1e-32 UniRef50_A6LMV9 Ribosome maturation factor rimP n=1 Tax=Thermosi... 140 1e-32 UniRef50_C7H124 Putative uncharacterized protein n=1 Tax=Eubacte... 140 2e-32 UniRef50_B1MZH7 Ribosome maturation factor rimP n=3 Tax=Leuconos... 139 2e-32 UniRef50_Q7MQU0 Ribosome maturation factor rimP n=1 Tax=Wolinell... 139 2e-32 UniRef50_A6WWW8 Ribosome maturation factor rimP n=37 Tax=Rhizobi... 139 2e-32 UniRef50_B8GX01 Ribosome maturation factor rimP n=4 Tax=Caulobac... 139 3e-32 UniRef50_C1SH19 Uncharacterized conserved protein n=1 Tax=Denitr... 139 3e-32 UniRef50_D2MK27 Putative uncharacterized protein n=1 Tax=Candida... 139 4e-32 UniRef50_C9M6Q7 Putative uncharacterized protein n=1 Tax=Jonquet... 139 4e-32 UniRef50_C0QHM0 Ribosome maturation factor rimP n=1 Tax=Desulfob... 138 7e-32 UniRef50_D0XR54 Putative uncharacterized protein n=1 Tax=Brevund... 137 1e-31 UniRef50_C9RKT2 Putative uncharacterized protein n=1 Tax=Fibroba... 137 1e-31 UniRef50_Q6MMS8 Ribosome maturation factor rimP n=1 Tax=Bdellovi... 137 1e-31 UniRef50_C5NYH1 Putative uncharacterized protein n=1 Tax=Gemella... 136 2e-31 UniRef50_C6HXJ9 Putative uncharacterized protein n=1 Tax=Leptosp... 136 2e-31 UniRef50_C7H6A0 Protein associated with NUS operon n=2 Tax=Clost... 135 3e-31 UniRef50_A6Q228 Ribosome maturation factor rimP n=3 Tax=Epsilonp... 135 3e-31 UniRef50_A1UU47 Ribosome maturation factor rimP n=5 Tax=Bartonel... 135 3e-31 UniRef50_C5CEP0 Putative uncharacterized protein n=1 Tax=Kosmoto... 135 4e-31 UniRef50_A7ZC71 Ribosome maturation factor rimP n=3 Tax=Campylob... 135 4e-31 UniRef50_D1B0G8 Putative uncharacterized protein n=1 Tax=Sulfuro... 134 9e-31 UniRef50_A6T0Z0 Ribosome maturation factor rimP n=7 Tax=Betaprot... 133 1e-30 UniRef50_B6BVK2 Putative uncharacterized protein n=1 Tax=beta pr... 133 1e-30 UniRef50_Q1MQZ0 Ribosome maturation factor rimP n=1 Tax=Lawsonia... 133 1e-30 UniRef50_Q2NC14 Ribosome maturation factor rimP n=2 Tax=Erythrob... 133 1e-30 UniRef50_C7NAM7 Putative uncharacterized protein n=2 Tax=Fusobac... 133 2e-30 UniRef50_B0S1E8 Ribosome maturation factor rimP n=2 Tax=Finegold... 133 2e-30 UniRef50_C4XIM4 Putative uncharacterized protein n=2 Tax=Desulfo... 133 2e-30 UniRef50_Q5HX28 Ribosome maturation factor rimP n=18 Tax=Campylo... 133 2e-30 UniRef50_A8SMZ9 Putative uncharacterized protein n=1 Tax=Parvimo... 133 2e-30 UniRef50_C5F193 Putative uncharacterized protein n=2 Tax=Helicob... 133 2e-30 UniRef50_D2SDW9 Putative uncharacterized protein n=1 Tax=Geoderm... 132 2e-30 UniRef50_B1VYN8 Ribosome maturation factor rimP n=13 Tax=Strepto... 132 3e-30 UniRef50_A1SLL0 Ribosome maturation factor rimP n=2 Tax=Actinomy... 132 3e-30 UniRef50_C1TMK4 Uncharacterized conserved protein n=1 Tax=Dethio... 132 3e-30 UniRef50_B6W939 Putative uncharacterized protein n=1 Tax=Anaeroc... 132 3e-30 UniRef50_C3XMY5 Putative uncharacterized protein n=1 Tax=Helicob... 132 4e-30 UniRef50_A3ER83 Putative uncharacterized protein n=2 Tax=Leptosp... 131 5e-30 UniRef50_C8W721 Putative uncharacterized protein n=3 Tax=Atopobi... 131 6e-30 UniRef50_UPI0001C31DB5 protein of unknown function DUF150 n=1 Ta... 131 6e-30 UniRef50_C5BWS6 Ribosome maturation factor rimP n=1 Tax=Beutenbe... 131 6e-30 UniRef50_C9MWU5 UPF0090 protein n=2 Tax=Fusobacteriaceae RepID=C... 131 7e-30 UniRef50_A4E6V0 Putative uncharacterized protein n=3 Tax=Collins... 131 7e-30 UniRef50_A7HL08 Ribosome maturation factor rimP n=1 Tax=Fervidob... 131 9e-30 UniRef50_B7IDT7 Ribosome maturation factor rimP n=1 Tax=Thermosi... 130 1e-29 UniRef50_A8YVR1 Ribosome maturation factor rimP n=20 Tax=Lactoba... 130 2e-29 UniRef50_C0W0C2 Protein of hypothetical function DUF150 n=1 Tax=... 129 2e-29 UniRef50_A8F3W0 Ribosome maturation factor rimP n=1 Tax=Thermoto... 129 2e-29 UniRef50_C4DMD6 Uncharacterized conserved protein n=4 Tax=Actino... 129 3e-29 UniRef50_Q0AYJ1 Ribosome maturation factor rimP n=1 Tax=Syntroph... 128 4e-29 UniRef50_A7BD83 Putative uncharacterized protein n=1 Tax=Actinom... 128 5e-29 UniRef50_C8PIF5 Putative uncharacterized protein n=1 Tax=Campylo... 128 6e-29 UniRef50_A5CEN4 Ribosome maturation factor rimP n=2 Tax=Orientia... 127 1e-28 UniRef50_B0VFB7 Putative uncharacterized protein n=1 Tax=Candida... 127 1e-28 UniRef50_A1ZEG3 15 kDa protein n=3 Tax=Sphingobacteriales RepID=... 127 2e-28 UniRef50_D0GIT1 Putative uncharacterized protein n=1 Tax=Leptotr... 126 2e-28 UniRef50_C1F695 Ribosome maturation factor rimP n=1 Tax=Acidobac... 126 2e-28 UniRef50_D0MI89 Putative uncharacterized protein n=1 Tax=Rhodoth... 125 4e-28 UniRef50_C5RBB8 Putative uncharacterized protein n=1 Tax=Weissel... 125 4e-28 UniRef50_C1B310 Ribosome maturation factor rimP n=3 Tax=Nocardia... 125 5e-28 UniRef50_C6XFV9 Putative uncharacterized protein n=1 Tax=Candida... 125 6e-28 UniRef50_A6GNL5 Putative uncharacterized protein n=1 Tax=Limnoba... 123 1e-27 UniRef50_Q2JX22 Ribosome maturation factor rimP n=30 Tax=Cyanoba... 123 1e-27 UniRef50_Q1J5B0 Ribosome maturation factor rimP n=71 Tax=Strepto... 123 1e-27 UniRef50_Q9ZM44 Ribosome maturation factor rimP n=14 Tax=Helicob... 123 2e-27 UniRef50_C3RL59 Putative uncharacterized protein n=4 Tax=Bacteri... 123 2e-27 UniRef50_C3XJ54 Putative uncharacterized protein n=1 Tax=Helicob... 123 2e-27 UniRef50_A0RQZ2 Ribosome maturation factor rimP n=2 Tax=Epsilonp... 123 2e-27 UniRef50_A0LV30 Ribosome maturation factor rimP n=1 Tax=Acidothe... 122 3e-27 UniRef50_P59821 Ribosome maturation factor rimP n=2 Tax=Helicoba... 121 7e-27 UniRef50_C0ZYA2 Ribosome maturation factor rimP n=2 Tax=Rhodococ... 120 1e-26 UniRef50_D1VB72 Putative uncharacterized protein n=1 Tax=Frankia... 120 1e-26 UniRef50_A5ZWL4 Putative uncharacterized protein n=1 Tax=Ruminoc... 120 1e-26 UniRef50_A0JUT7 Ribosome maturation factor rimP n=3 Tax=Arthroba... 120 1e-26 UniRef50_A8EYF2 Ribosome maturation factor rimP n=1 Tax=Ricketts... 120 2e-26 UniRef50_A4FM36 Ribosome maturation factor rimP n=4 Tax=Actinomy... 119 2e-26 UniRef50_A9ITY3 Ribosome maturation factor rimP n=11 Tax=Burkhol... 119 3e-26 UniRef50_B1XY65 Ribosome maturation factor rimP n=57 Tax=Burkhol... 118 4e-26 UniRef50_A9BH33 Ribosome maturation factor rimP n=1 Tax=Petrotog... 118 4e-26 UniRef50_Q6A7M3 Ribosome maturation factor rimP n=2 Tax=Propioni... 117 9e-26 UniRef50_Q2S1N5 Ribosome maturation factor rimP n=1 Tax=Saliniba... 117 9e-26 UniRef50_C9Z253 Putative uncharacterized protein n=4 Tax=Strepto... 117 1e-25 UniRef50_B7CAI1 Putative uncharacterized protein n=1 Tax=Eubacte... 117 2e-25 UniRef50_Q1IZ05 Ribosome maturation factor rimP n=4 Tax=Deinococ... 116 2e-25 UniRef50_C7I1W8 Putative uncharacterized protein n=1 Tax=Thiomon... 116 2e-25 UniRef50_Q1AW57 Ribosome maturation factor rimP n=1 Tax=Rubrobac... 116 2e-25 UniRef50_B9Y7V3 Putative uncharacterized protein n=1 Tax=Holdema... 116 2e-25 UniRef50_A4SY80 Ribosome maturation factor rimP n=2 Tax=Polynucl... 115 4e-25 UniRef50_D1B5D8 Putative uncharacterized protein n=1 Tax=Therman... 115 5e-25 UniRef50_A6GK80 Putative uncharacterized protein n=1 Tax=Plesioc... 115 5e-25 UniRef50_C7R3D7 Putative uncharacterized protein n=1 Tax=Jonesia... 114 9e-25 UniRef50_A8R7M6 Putative uncharacterized protein n=1 Tax=Eubacte... 114 1e-24 UniRef50_C7RGN7 Putative uncharacterized protein n=3 Tax=Anaeroc... 114 1e-24 UniRef50_C7QDY6 Putative uncharacterized protein n=1 Tax=Catenul... 113 1e-24 UniRef50_C6VUJ7 Putative uncharacterized protein n=1 Tax=Dyadoba... 113 1e-24 UniRef50_Q30SS4 Ribosome maturation factor rimP n=2 Tax=Campylob... 113 1e-24 UniRef50_D0WR24 Putative uncharacterized protein n=1 Tax=Actinom... 113 2e-24 UniRef50_Q72KG3 Ribosome maturation factor rimP n=3 Tax=Thermace... 112 3e-24 UniRef50_D2QL24 Putative uncharacterized protein n=1 Tax=Spiroso... 112 5e-24 UniRef50_C2FW05 Protein of hypothetical function DUF150 n=2 Tax=... 111 7e-24 UniRef50_Q04GN4 Ribosome maturation factor rimP n=2 Tax=Oenococc... 111 7e-24 UniRef50_B6WX92 Putative uncharacterized protein n=1 Tax=Desulfo... 111 9e-24 UniRef50_A5GVG1 Ribosome maturation factor rimP n=7 Tax=Cyanobac... 110 2e-23 UniRef50_A3HY55 Putative uncharacterized protein n=1 Tax=Algorip... 110 2e-23 UniRef50_C8PR25 Putative uncharacterized protein n=1 Tax=Trepone... 109 2e-23 UniRef50_Q47RV4 Ribosome maturation factor rimP n=1 Tax=Thermobi... 109 4e-23 UniRef50_UPI0001BCD1F0 hypothetical protein AmarD1_13863 n=1 Tax... 108 4e-23 UniRef50_UPI0001C338FD hypothetical protein UCYN_07210 n=1 Tax=c... 107 1e-22 UniRef50_D0LBI5 Putative uncharacterized protein n=1 Tax=Gordoni... 107 1e-22 UniRef50_B8J1Y7 Ribosome maturation factor rimP n=1 Tax=Desulfov... 107 1e-22 UniRef50_A3PY72 Ribosome maturation factor rimP n=18 Tax=Mycobac... 107 2e-22 UniRef50_Q73NP4 Ribosome maturation factor rimP n=1 Tax=Treponem... 107 2e-22 UniRef50_UPI000185BE37 conserved hypothetical protein n=1 Tax=Co... 106 3e-22 UniRef50_D1C050 Putative uncharacterized protein n=1 Tax=Xylanim... 106 3e-22 UniRef50_C1XJ52 Uncharacterized conserved protein n=1 Tax=Meioth... 106 3e-22 UniRef50_Q0EZ70 Putative uncharacterized protein n=1 Tax=Maripro... 104 8e-22 UniRef50_B2GKR8 Ribosome maturation factor rimP n=1 Tax=Kocuria ... 104 9e-22 UniRef50_C1A8N5 Ribosome maturation factor rimP n=1 Tax=Gemmatim... 104 1e-21 Sequences not found previously or not previously below threshold: UniRef50_Q8DHL1 Ribosome maturation factor rimP n=1 Tax=Thermosy... 110 1e-23 UniRef50_D1BJ69 Uncharacterized conserved protein n=1 Tax=Sangui... 106 2e-22 UniRef50_C2BRP0 Putative uncharacterized protein n=1 Tax=Mobilun... 104 8e-22 UniRef50_B5Y930 Ribosome maturation factor rimP n=1 Tax=Coprothe... 104 1e-21 >UniRef50_A4WEY5 Ribosome maturation factor rimP n=181 Tax=Proteobacteria RepID=RIMP_ENT38 Length = 160 Score = 218 bits (557), Expect = 4e-56, Method: Composition-based stats. Identities = 138/150 (92%), Positives = 144/150 (96%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSA 60 +STLEQKLTEMI APVEALG+ELVGIEFIR RTSTLRIYIDSEDGINVDDCADVSHQVSA Sbjct: 11 LSTLEQKLTEMIKAPVEALGYELVGIEFIRSRTSTLRIYIDSEDGINVDDCADVSHQVSA 70 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 VLDVEDPITVAYNLEVSSPGL RP+FTAEHY ++GEEV +VLRMAVQNRRKWQGVIKAV Sbjct: 71 VLDVEDPITVAYNLEVSSPGLHRPMFTAEHYTHYIGEEVAVVLRMAVQNRRKWQGVIKAV 130 Query: 121 DGEMITVTVEGKDEVFALSNIQKANLVPHF 150 DGEMITVTVEGKDEVFALSNIQKANLVPHF Sbjct: 131 DGEMITVTVEGKDEVFALSNIQKANLVPHF 160 >UniRef50_A1ST43 Ribosome maturation factor rimP n=90 Tax=Gammaproteobacteria RepID=RIMP_PSYIN Length = 153 Score = 203 bits (518), Expect = 1e-51, Method: Composition-based stats. Identities = 95/151 (62%), Positives = 125/151 (82%), Gaps = 1/151 (0%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVS 59 M++LE++LTEM+ VE LG+ELVG+E+IR G+ STLR+YID ++GI VDDCA VS QVS Sbjct: 1 MASLEERLTEMLAPSVEDLGYELVGVEYIRAGKHSTLRVYIDQDEGILVDDCAAVSRQVS 60 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 A++DVEDPIT Y+LEVSSPG++RPLF AEHY F GEEV + LRM +QNRR+W+GVI + Sbjct: 61 AIMDVEDPITNEYSLEVSSPGMNRPLFKAEHYQIFAGEEVKIQLRMPIQNRRRWKGVIVS 120 Query: 120 VDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 + E+I + +EG++E F+LSNIQKAN+VP F Sbjct: 121 AEDEIICLNIEGREERFSLSNIQKANIVPKF 151 >UniRef50_Q15V74 Ribosome maturation factor rimP n=8 Tax=Gammaproteobacteria RepID=RIMP_PSEA6 Length = 152 Score = 192 bits (489), Expect = 3e-48, Method: Composition-based stats. Identities = 93/151 (61%), Positives = 119/151 (78%), Gaps = 1/151 (0%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVS 59 MS LEQKLTEM+TAPVEALGFE+VGIEF+R G+ ST+R+YID DGI+VD CA+VSHQVS Sbjct: 1 MSQLEQKLTEMLTAPVEALGFEMVGIEFVRAGKHSTMRVYIDHPDGISVDHCAEVSHQVS 60 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 AVLDVEDPI YNLEVSSPG++RPLF +HY VGE VTL L+M + +RR ++G + + Sbjct: 61 AVLDVEDPINTEYNLEVSSPGMERPLFKLQHYIESVGEVVTLRLKMPMGDRRNFKGKLLS 120 Query: 120 VDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 M+T+ V+ ++ V A +NI+K N+VP F Sbjct: 121 EADGMLTIEVDNQEFVLAFANIEKGNVVPTF 151 >UniRef50_C9R8Y0 Putative uncharacterized protein n=1 Tax=Ammonifex degensii KC4 RepID=C9R8Y0_AMMDK Length = 161 Score = 189 bits (481), Expect = 2e-47, Method: Composition-based stats. Identities = 58/149 (38%), Positives = 87/149 (58%), Gaps = 1/149 (0%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAV 61 + + ++ + E LG ELV +E+ + G LR++ID G+ +DDC +S + Sbjct: 6 KVVEVVSRLAEPLAERLGLELVDVEYKKEGGRWVLRVFIDKPSGVTLDDCEALSEALGEA 65 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 LDVEDPI +Y+LEVSSPG++RPL H+ RFVG EV + V+ +R++ GV+ A D Sbjct: 66 LDVEDPIPHSYSLEVSSPGVERPLKKPAHFQRFVGREVRVSTLAPVEGQRRFTGVLLAAD 125 Query: 122 GEMITVTVEGKDEVFALSNIQKANLVPHF 150 E I + +GK+ I KANLV + Sbjct: 126 EEGIRLETDGKELDLPYRLIAKANLVFRW 154 >UniRef50_C8X0H0 Putative uncharacterized protein n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X0H0_DESRD Length = 157 Score = 188 bits (479), Expect = 4e-47, Method: Composition-based stats. Identities = 59/147 (40%), Positives = 94/147 (63%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVL 62 L ++L+E+I + G ++ G+E R LR+Y+DS +G+++D CA +S +S L Sbjct: 4 KLYERLSELIKPLAASCGLDVWGMEIPASRGGVLRVYVDSPNGVSIDQCATLSRHISVTL 63 Query: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 DVEDP+ Y LEVSSPGL+RP FT ++G+ V L L+ +Q R+KW+GV+ +G Sbjct: 64 DVEDPLPGPYTLEVSSPGLERPFFTVSQLPPYIGQPVALKLQAPMQGRKKWRGVLIEAEG 123 Query: 123 EMITVTVEGKDEVFALSNIQKANLVPH 149 + +T+ V+G + VFA +++KA LV Sbjct: 124 DHLTLDVDGVEHVFAWEDVEKARLVFQ 150 >UniRef50_B5JRQ8 Putative uncharacterized protein n=2 Tax=Gammaproteobacteria RepID=B5JRQ8_9GAMM Length = 159 Score = 188 bits (478), Expect = 5e-47, Method: Composition-based stats. Identities = 66/151 (43%), Positives = 97/151 (64%), Gaps = 1/151 (0%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGRTS-TLRIYIDSEDGINVDDCADVSHQVS 59 M +K +I V+ LG+ELVG++F + L +YID ++G+N+DDCA +S +VS Sbjct: 1 MQHKARKEWSLIEPVVQDLGYELVGVDFRANASPAVLCVYIDRDEGVNIDDCAKISREVS 60 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 AVLDVEDPIT AYNLEVSSPGLDRPLF + ++ G + L + + RR ++G + Sbjct: 61 AVLDVEDPITSAYNLEVSSPGLDRPLFRESDFVKYKGHLAKVKLSIPYEERRNFKGQLNG 120 Query: 120 VDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 V+ M+ + V+ ++ + I+KANLVP F Sbjct: 121 VEDGMVLLIVDNEEYLLPYEQIEKANLVPQF 151 >UniRef50_Q31GK7 Ribosome maturation factor rimP n=2 Tax=Gammaproteobacteria RepID=RIMP_THICR Length = 151 Score = 187 bits (477), Expect = 7e-47, Method: Composition-based stats. Identities = 71/150 (47%), Positives = 98/150 (65%), Gaps = 2/150 (1%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFI-RGRTSTLRIYIDSED-GINVDDCADVSHQVSA 60 TLE K+ ++ +E +GF+ G E++ G+ STLRIYID ++ G+ VDDC VS QVSA Sbjct: 2 TLEDKIENLLRPTIETMGFQFWGCEYLPAGKHSTLRIYIDKDEVGVTVDDCGKVSRQVSA 61 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 ++DVEDPI+ AY LEVSSPG+DRPLF E Y + G+EV + V R++++GV+ V Sbjct: 62 IMDVEDPISNAYMLEVSSPGMDRPLFHPEQYKAYEGQEVQVRTSSPVMGRKRFKGVMSQV 121 Query: 121 DGEMITVTVEGKDEVFALSNIQKANLVPHF 150 I V V+G+ S I KAN+VP F Sbjct: 122 SESDIAVEVDGELYEIPFSLIDKANVVPQF 151 >UniRef50_B0TQA4 Ribosome maturation factor rimP n=34 Tax=Gammaproteobacteria RepID=RIMP_SHEHH Length = 151 Score = 184 bits (469), Expect = 6e-46, Method: Composition-based stats. Identities = 83/151 (54%), Positives = 112/151 (74%), Gaps = 1/151 (0%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVS 59 M+TLE+KL EM+ APVEALG +L G+E+I+ G+ S LR+YID+E GI ++DCA+ S QVS Sbjct: 1 MATLERKLVEMLKAPVEALGHQLWGLEYIQAGKHSILRLYIDNEKGIFIEDCAEASRQVS 60 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 AVLDVEDPIT Y LEVSSPG++R LFTAE Y ++GE V + L M V R +G + Sbjct: 61 AVLDVEDPITSEYTLEVSSPGVERLLFTAEQYKAYIGETVKVQLTMPVAGSRNLKGTVTG 120 Query: 120 VDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 VDG+M+ ++V+G + + AL NI+K NL+ F Sbjct: 121 VDGQMLNLSVDGNELIVALDNIRKGNLIAKF 151 >UniRef50_Q2RJM9 Ribosome maturation factor rimP n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=RIMP_MOOTA Length = 158 Score = 184 bits (468), Expect = 7e-46, Method: Composition-based stats. Identities = 56/151 (37%), Positives = 83/151 (54%), Gaps = 2/151 (1%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVS 59 MS L + E++ + +G+ELV +++ R G LR++ID +GI +DDC VS VS Sbjct: 1 MSKLTALIQELVEPLLTPMGYELVDLQYGREGGRYILRLFIDRPEGIGLDDCEQVSRVVS 60 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 A+LD +DPI +Y LEVSSPGL+RPL + RF G +V L + +R +QG + Sbjct: 61 ALLDEKDPIPHSYYLEVSSPGLERPLKKEADFNRFAGRKVKLRTFAPINGQRHFQGRLLG 120 Query: 120 VDGEMITVTV-EGKDEVFALSNIQKANLVPH 149 + + + EG D L + A LV Sbjct: 121 YQDGQVRMHLEEGWDLAIPLEQVATARLVFD 151 >UniRef50_D0L0S8 Putative uncharacterized protein n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L0S8_HALNC Length = 166 Score = 184 bits (467), Expect = 1e-45, Method: Composition-based stats. Identities = 66/152 (43%), Positives = 98/152 (64%), Gaps = 2/152 (1%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSA 60 M + + + ++ VEA G VG EF G LR+YID+E G+ +DDC VS +S Sbjct: 1 MQKIPESIEALLQPVVEAAGCAWVGGEFRGGPDGLLRVYIDTEAGVTLDDCTKVSDALSG 60 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 VLDVEDP Y LEVSSPG++RP+F A +A F+G++V + L + RR+++G++ AV Sbjct: 61 VLDVEDPFPGFYRLEVSSPGVERPMFRASDFALFIGQKVHVRLHRPLAQRRRFEGIVSAV 120 Query: 121 DGEMITVTVEGKDEV--FALSNIQKANLVPHF 150 DGE I++++EG +V F S +++ANLV F Sbjct: 121 DGEQISLSIEGDQDVFTFPFSEVERANLVFEF 152 >UniRef50_Q3J9B4 Ribosome maturation factor rimP n=4 Tax=Gammaproteobacteria RepID=RIMP_NITOC Length = 151 Score = 183 bits (466), Expect = 1e-45, Method: Composition-based stats. Identities = 65/147 (44%), Positives = 102/147 (69%), Gaps = 2/147 (1%) Query: 5 EQKLTEMITAPVEALGFELVGIEFIR--GRTSTLRIYIDSEDGINVDDCADVSHQVSAVL 62 +++++E++ V ALG+ELVG+E + G+ + LRIYID+ GI +DDC SHQ+SA+L Sbjct: 4 DRRISELVEPVVAALGYELVGVERLSSVGKGALLRIYIDTPSGITIDDCERASHQISALL 63 Query: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 DVE+ + AY LE+SSPGL+RPLFT EH+ RF G E ++ L + RR+++G+++ + G Sbjct: 64 DVEELMASAYTLEISSPGLNRPLFTEEHFKRFTGVEASITLSKPLNGRREFKGLLRGIRG 123 Query: 123 EMITVTVEGKDEVFALSNIQKANLVPH 149 + + + V G++ L I+KA LVP Sbjct: 124 DRVVILVAGEEFELPLEGIKKARLVPE 150 >UniRef50_Q5WT34 Ribosome maturation factor rimP n=5 Tax=Legionella RepID=RIMP_LEGPL Length = 147 Score = 183 bits (466), Expect = 1e-45, Method: Composition-based stats. Identities = 63/146 (43%), Positives = 93/146 (63%), Gaps = 1/146 (0%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFI-RGRTSTLRIYIDSEDGINVDDCADVSHQVSAVL 62 + L ++ ++ +G+EL G E++ +G+ S LRIYID DGI +DDC +VS QVSA+L Sbjct: 2 INDDLIVLLEPIIKNMGYELWGCEYLSQGKHSLLRIYIDKPDGIGIDDCQEVSKQVSAML 61 Query: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 DVEDPI Y+LE+SSPG+ RPLF+ Y R++G E+ + V +RK G+I + G Sbjct: 62 DVEDPIPGHYSLEISSPGIPRPLFSIWQYQRYLGYEIHVKTFKPVNGKRKLSGIIVSASG 121 Query: 123 EMITVTVEGKDEVFALSNIQKANLVP 148 + I + + + + LSNI KANL Sbjct: 122 DTIVLDINNEHQEILLSNIVKANLTV 147 >UniRef50_A9N8V8 Ribosome maturation factor rimP n=6 Tax=Coxiella burnetii RepID=RIMP_COXBR Length = 153 Score = 182 bits (464), Expect = 2e-45, Method: Composition-based stats. Identities = 73/145 (50%), Positives = 101/145 (69%), Gaps = 2/145 (1%) Query: 8 LTEMITAPVEALGFELVGIE-FIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVED 66 L +I VEALGFELVG E F RG T+ L++++D GI +D+CA VS Q+SAVLDVED Sbjct: 7 LHRLIAPAVEALGFELVGCELFRRGATTILQVFVDKPGGIGLDECAKVSRQISAVLDVED 66 Query: 67 PITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD-GEMI 125 PI Y LEVSSPGL+RPL+TA HY RF+G + + LR + +R+++G++ AVD E + Sbjct: 67 PIRGRYTLEVSSPGLERPLYTANHYRRFIGNKAKIRLREPREGQRQFRGMVVAVDNEEQV 126 Query: 126 TVTVEGKDEVFALSNIQKANLVPHF 150 T+ ++ K +L I+KANL+ F Sbjct: 127 TLQLDNKILKVSLGEIEKANLIADF 151 >UniRef50_Q0A795 Ribosome maturation factor rimP n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=RIMP_ALHEH Length = 152 Score = 182 bits (464), Expect = 2e-45, Method: Composition-based stats. Identities = 67/151 (44%), Positives = 91/151 (60%), Gaps = 2/151 (1%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVS 59 M+ E L +I + +G+ELVGIE+ LRIYIDS DGI +DDC S Q+S Sbjct: 1 MAATEDTLYALIDPLLTGMGYELVGIEYGGPAGKRLLRIYIDSPDGITLDDCETCSRQIS 60 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 AVLDVEDPI Y LE+SSPGLDRP+F A Y RF GE++ + L + RR+++GV+ Sbjct: 61 AVLDVEDPIPGEYTLEISSPGLDRPIFKASDYDRFAGEQIKIRLSAPWEGRRRFKGVLAG 120 Query: 120 VDGEMI-TVTVEGKDEVFALSNIQKANLVPH 149 + E + V +G + L I+KA L+ Sbjct: 121 LGDEGVRVVEAQGDEVQIPLDLIEKARLILE 151 >UniRef50_B8FR10 Ribosome maturation factor rimP n=2 Tax=Desulfitobacterium hafniense RepID=RIMP_DESHD Length = 152 Score = 180 bits (457), Expect = 2e-44, Method: Composition-based stats. Identities = 56/149 (37%), Positives = 87/149 (58%), Gaps = 1/149 (0%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAV 61 ++ +++ +I + G ELV +E+++ G LRIYID E G+++DDC +VSH VS V Sbjct: 4 SIMEQVEAIIAPVITEQGLELVDVEYVKEGAHWYLRIYIDKEGGVDIDDCTNVSHLVSEV 63 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 LD DPI AY LEVSSPGL+RPL E + RF G+ V ++ + Q +++ G + + Sbjct: 64 LDKHDPIAQAYMLEVSSPGLERPLKKDEDFERFTGKLVRVLTKEVYQGYKEFTGYLVGLI 123 Query: 122 GEMITVTVEGKDEVFALSNIQKANLVPHF 150 + I + E + + + KANL F Sbjct: 124 EDDIVLEYEKERMAIPRAIVDKANLTFEF 152 >UniRef50_B1J268 Ribosome maturation factor rimP n=21 Tax=Gammaproteobacteria RepID=RIMP_PSEPW Length = 169 Score = 180 bits (457), Expect = 2e-44, Method: Composition-based stats. Identities = 69/151 (45%), Positives = 103/151 (68%), Gaps = 1/151 (0%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFI-RGRTSTLRIYIDSEDGINVDDCADVSHQVS 59 +S+ ++L ++ VE LG++ GIE++ +G+ S LRIYID E GI V+DC VS Q S Sbjct: 18 VSSKLEQLQALLAPVVEGLGYQCWGIEYVSQGKHSVLRIYIDKEGGILVEDCEAVSRQAS 77 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 A+LDVEDPI+ Y LEVSSPG+DRPLFT E +A GE+V + LR + RR +QG+++ Sbjct: 78 AILDVEDPISSEYTLEVSSPGMDRPLFTLEQFASHAGEQVKIKLRTPFEGRRNFQGLLRG 137 Query: 120 VDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 V+ + + V V+ + + + +I KAN++P F Sbjct: 138 VEEQDVVVQVDSHEFLLPIDSIDKANIIPSF 168 >UniRef50_A6VU27 Ribosome maturation factor rimP n=18 Tax=Gammaproteobacteria RepID=RIMP_MARMS Length = 153 Score = 178 bits (453), Expect = 4e-44, Method: Composition-based stats. Identities = 76/153 (49%), Positives = 103/153 (67%), Gaps = 3/153 (1%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYI--DSEDGINVDDCADVSHQ 57 MS L E+I VE LGFE G+E++ G+ S LRIYI D+E GI+V+DCA VS Q Sbjct: 1 MSAKYTILEELIRPVVEGLGFEFWGMEYLSLGKDSVLRIYIETDAEKGIDVEDCARVSRQ 60 Query: 58 VSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI 117 VS++LDVEDPIT YNLEVSSPGLDRPLF+ Y ++G V+L LR+ RRK++G + Sbjct: 61 VSSILDVEDPITGEYNLEVSSPGLDRPLFSLAQYQAYIGSIVSLRLRVPFDGRRKFKGQL 120 Query: 118 KAVDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 ++ E I + V+ ++ + + I KAN+VP F Sbjct: 121 MGIESEDIVIRVDQEEYLLPIDLIDKANVVPQF 153 >UniRef50_B8GP00 Ribosome maturation factor rimP n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=RIMP_THISH Length = 154 Score = 178 bits (453), Expect = 4e-44, Method: Composition-based stats. Identities = 63/141 (44%), Positives = 93/141 (65%), Gaps = 1/141 (0%) Query: 7 KLTEMITAPVEALGFELVGIEFIRGRTS-TLRIYIDSEDGINVDDCADVSHQVSAVLDVE 65 +L ++ V +G++L G+EF + S LR++IDSE GI +DDC +VS QVSA++DVE Sbjct: 2 QLKALLEPLVTRMGYQLWGMEFRVAKHSALLRLFIDSEQGITLDDCTEVSRQVSALMDVE 61 Query: 66 DPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMI 125 DPI V Y LEVSSPG+DRPLF A YAR+VGE+V + + + +R + G I + D + + Sbjct: 62 DPIQVPYTLEVSSPGVDRPLFEAGQYARYVGEQVRVRTQWPIDGQRNFAGAIVSADEDSV 121 Query: 126 TVTVEGKDEVFALSNIQKANL 146 T+ V+G++ L I + L Sbjct: 122 TLDVDGREVRLPLEAIARGRL 142 >UniRef50_Q3AB94 Ribosome maturation factor rimP n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=RIMP_CARHZ Length = 154 Score = 177 bits (451), Expect = 7e-44, Method: Composition-based stats. Identities = 49/150 (32%), Positives = 82/150 (54%), Gaps = 1/150 (0%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTST-LRIYIDSEDGINVDDCADVSHQVSA 60 +EQK+ + L E+V +EF++ LRIYID ++G+++DDC + S ++ Sbjct: 5 KGIEQKVWPLAERVGGELNLEVVDVEFVKEAGRYFLRIYIDKDEGVDLDDCQNFSERIGV 64 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 +LD EDPI +Y LEVSSPG++RPL + +F G E + A++ +++++G + V Sbjct: 65 ILDEEDPIPQSYYLEVSSPGIERPLKKLADFEKFAGREAQIKTFAAIEGQKQFKGKLLGV 124 Query: 121 DGEMITVTVEGKDEVFALSNIQKANLVPHF 150 + + + L I KANL F Sbjct: 125 RDGQVVIDAGKGEVQIPLEQIAKANLTFDF 154 >UniRef50_B1I359 Ribosome maturation factor rimP n=4 Tax=Clostridiales RepID=RIMP_DESAP Length = 154 Score = 177 bits (450), Expect = 1e-43, Method: Composition-based stats. Identities = 54/151 (35%), Positives = 78/151 (51%), Gaps = 2/151 (1%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFI-RGRTSTLRIYIDSEDGINVDDCADVSHQVSA 60 S + ++ EM E G ELV ++++ G LR+++D GIN+DDC VS ++ Sbjct: 4 SDIAGRVEEMARPLAERKGLELVEVQYVTEGGRRYLRVFLDKPGGINLDDCEAVSRELDR 63 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 LD D I +Y LEVSSPGL+RPL AE Y RF G V + + R+K+ G + Sbjct: 64 ALDDVDFIPHSYVLEVSSPGLERPLKRAEDYVRFKGRLVQINTYAPLNGRKKFSGRLMGS 123 Query: 121 DGEMITVTV-EGKDEVFALSNIQKANLVPHF 150 E +T+ + E + I KA L F Sbjct: 124 GEEGVTILLGEHELATIPWDQISKARLAVEF 154 >UniRef50_B0K1E0 Ribosome maturation factor rimP n=18 Tax=Clostridia RepID=RIMP_THEPX Length = 151 Score = 177 bits (450), Expect = 1e-43, Method: Composition-based stats. Identities = 57/151 (37%), Positives = 85/151 (56%), Gaps = 1/151 (0%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVS 59 MS +EQ +++ +E FELV +E+ + G LR+YID E GI +DDC VS +S Sbjct: 1 MSKIEQIAKDLVMPILEKNNFELVDVEYKKEGSHWYLRVYIDKEGGITLDDCQLVSEYLS 60 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 LD DPI +Y LEVSSPGLDRPL + R +G+E+ + L + R+K++G + Sbjct: 61 DRLDEVDPIEHSYILEVSSPGLDRPLKKPRDFERNIGKEIEISLYTPIDKRKKFEGELIE 120 Query: 120 VDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 G+ I + G+ + F + N+ V F Sbjct: 121 FTGDKIIILYNGERKEFDMKNVSLVKPVIKF 151 >UniRef50_Q09BT8 YlxS n=1 Tax=Stigmatella aurantiaca DW4/3-1 RepID=Q09BT8_STIAU Length = 249 Score = 176 bits (448), Expect = 1e-43, Method: Composition-based stats. Identities = 58/154 (37%), Positives = 84/154 (54%), Gaps = 5/154 (3%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGR-TSTLRIYIDSEDG-INVDDCADVSHQVS 59 T+E++ ++ V G EL+ +EF+R R LR++ID G + +D+C+ VS V Sbjct: 96 QTVEERAMTLLEPIVAGEGLELIDLEFVREREGWVLRLFIDKPGGRVGLDECSQVSRAVD 155 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQN--RRKWQGVI 117 LDVED + YNLEVSSPG++RPL HY R G++V + + + R+ + G + Sbjct: 156 PALDVEDLVPNEYNLEVSSPGVNRPLKKLSHYERVKGQKVKVKTFGPIGDPPRKNFSGTL 215 Query: 118 KAVDGEMITVTVEGKD-EVFALSNIQKANLVPHF 150 V E I V VEG L +I KANL F Sbjct: 216 TEVTAEGIAVEVEGAGAFRIPLKDIAKANLEFEF 249 >UniRef50_A8PNL6 15 kDa protein n=1 Tax=Rickettsiella grylli RepID=A8PNL6_9COXI Length = 153 Score = 176 bits (448), Expect = 2e-43, Method: Composition-based stats. Identities = 62/143 (43%), Positives = 93/143 (65%), Gaps = 1/143 (0%) Query: 8 LTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVED 66 + ++ +EALG+EL ++R G+ + LRIYIDSE GI + DC VS QV A+LDVED Sbjct: 8 IEARLSPTIEALGYELWACVYLREGQKNRLRIYIDSEKGITLSDCERVSRQVGALLDVED 67 Query: 67 PITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMIT 126 + Y+LEVSSPGLDRPL +H+ R+VG + + L+ + N+RK++G++++ I Sbjct: 68 LLQGHYHLEVSSPGLDRPLIKEDHFQRYVGYPIHVFLQSPIDNQRKFKGLLQSTRASGIV 127 Query: 127 VTVEGKDEVFALSNIQKANLVPH 149 + EGK+ V NI AN++P Sbjct: 128 LNREGKEFVLTWDNILHANVLPK 150 >UniRef50_A4XL73 Ribosome maturation factor rimP n=2 Tax=Clostridia RepID=RIMP_CALS8 Length = 151 Score = 175 bits (446), Expect = 3e-43, Method: Composition-based stats. Identities = 54/151 (35%), Positives = 87/151 (57%), Gaps = 1/151 (0%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVS 59 MS + +K+ E++ +E GF+LV IEF + G+ LR+YID GI +DDC VS ++S Sbjct: 1 MSKVTKKVEELVKPILEKYGFDLVDIEFKKEGKKHFLRVYIDKPGGITIDDCQLVSEELS 60 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 LD+ DPI +Y LEVSSPG+DRPL + R G V + L+ + N K G + Sbjct: 61 NKLDIVDPIPFSYYLEVSSPGVDRPLVNDRDFIRNKGRVVDVFLKQPIMNTTKLTGELVE 120 Query: 120 VDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 + +++ + ++G++ N++K + F Sbjct: 121 KNEDVLIIMIDGENISIPFENVKKVKVAIRF 151 >UniRef50_Q30WJ2 Ribosome maturation factor rimP n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=RIMP_DESDG Length = 173 Score = 175 bits (444), Expect = 5e-43, Method: Composition-based stats. Identities = 63/161 (39%), Positives = 96/161 (59%), Gaps = 11/161 (6%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSA 60 ++T+ ++L E+IT + + EL G++FI+G + LRIYID DG+ +D CA VS + Sbjct: 5 VTTIHEQLLEIITPVIRSFDLELWGMDFIQGGKAVLRIYIDGPDGVTIDQCATVSRHIGL 64 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMA---VQNRRKWQGVI 117 L+VED I AYNLEVSSPGL+RPLF+A A + G + LVLR R+K+ GV+ Sbjct: 65 ALEVEDIIAGAYNLEVSSPGLERPLFSAAQLAAYKGHKAELVLRAPCAQFPGRKKFTGVV 124 Query: 118 KAVDGEMITVTVE--------GKDEVFALSNIQKANLVPHF 150 V+GE T+ ++ ++ +++KA L+ F Sbjct: 125 GNVEGENFTLQIDPLKGGDNLQEELSAHWDDVKKARLIYDF 165 >UniRef50_B5YEH1 Ribosome maturation factor rimP n=2 Tax=Dictyoglomus RepID=RIMP_DICT6 Length = 156 Score = 174 bits (442), Expect = 7e-43, Method: Composition-based stats. Identities = 56/146 (38%), Positives = 87/146 (59%), Gaps = 1/146 (0%) Query: 6 QKLTEMITAPVEALGFELVGIEFIRGRT-STLRIYIDSEDGINVDDCADVSHQVSAVLDV 64 +KL E++ E +ELV +E+ R LR+YID G+ V+DCA +S ++S LD+ Sbjct: 11 KKLKEIVEPICEKYSYELVDLEYRREPHGWVLRVYIDKVGGVTVEDCAYLSEKISKELDI 70 Query: 65 EDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEM 124 +DPI +Y LEVSSPGLDRPL + R +GE+V + L ++ ++K++G I VD Sbjct: 71 KDPIPHSYILEVSSPGLDRPLKRKRDFERHMGEKVNITLLEEIEGKKKFEGKIFKVDESS 130 Query: 125 ITVTVEGKDEVFALSNIQKANLVPHF 150 +T+ ++ L I+KA L+ F Sbjct: 131 VTLKIDDSFVTIPLEKIKKAMLIVEF 156 >UniRef50_B9ZLN5 Putative uncharacterized protein n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZLN5_9GAMM Length = 151 Score = 173 bits (439), Expect = 2e-42, Method: Composition-based stats. Identities = 61/147 (41%), Positives = 84/147 (57%), Gaps = 1/147 (0%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGRTST-LRIYIDSEDGINVDDCADVSHQVS 59 M+ ++L ++ VE GF G+E+ G LRIYIDS +G+ VDDCA VS Q Sbjct: 1 MAEKPEQLKTLLAPVVEGQGFVFWGLEYHPGSKPVMLRIYIDSPEGVTVDDCALVSEQAG 60 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 AVL+VE + Y LEVSSPG++RPLFT + Y ++G V + L RR ++G + Sbjct: 61 AVLEVEQALRGNYTLEVSSPGIERPLFTPDQYRGYIGHPVKVRLSWPEHGRRNYRGTLIG 120 Query: 120 VDGEMITVTVEGKDEVFALSNIQKANL 146 VD EMI V V+G L+ I A + Sbjct: 121 VDEEMIEVEVDGTGYELPLNAIHNARV 147 >UniRef50_B2A393 Ribosome maturation factor rimP n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=RIMP_NATTJ Length = 154 Score = 172 bits (437), Expect = 3e-42, Method: Composition-based stats. Identities = 47/145 (32%), Positives = 79/145 (54%), Gaps = 2/145 (1%) Query: 7 KLTEMITAPVEALGFELVGIEF-IRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVE 65 ++ +I V LG++LV +E + + LR+YID GI +DDC VS+ + +LD Sbjct: 9 QIENIIEPAVRDLGYDLVDVELIMENQKWVLRVYIDHGKGIGLDDCELVSNSLDQLLDEH 68 Query: 66 DPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMI 125 DPI +Y LEVSSPG +RPL + + F G++V + + + R+ ++G + ++ E + Sbjct: 69 DPIPHSYVLEVSSPGAERPLKKKKDFVNFAGKKVQIKTYVKLDGRKNFKGKLLGLEDEHV 128 Query: 126 TVTV-EGKDEVFALSNIQKANLVPH 149 + + L I KANL+ Sbjct: 129 VLETFNSGEVKIPLDKIAKANLLLE 153 >UniRef50_A7H9F0 Ribosome maturation factor rimP n=5 Tax=Myxococcaceae RepID=RIMP_ANADF Length = 171 Score = 172 bits (437), Expect = 3e-42, Method: Composition-based stats. Identities = 51/156 (32%), Positives = 80/156 (51%), Gaps = 8/156 (5%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAV 61 ++ ++ ++ + G+ELV +E++R G TLR+++D G+ ++DC VS V + Sbjct: 8 SIAERTRRVLEPVLARDGYELVEVEWLRQGSRWTLRLFVDKPGGVGIEDCQAVSRLVDPI 67 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQN-------RRKWQ 114 LDVED I AY+LEVSSPGLDRPL + R+ G+ + V R+ W Sbjct: 68 LDVEDFIEPAYDLEVSSPGLDRPLRKPADFDRYAGQRAHVKAYGPVAGTAPGSPARKNWT 127 Query: 115 GVIKAVDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 GV+ + + V+G I KA+L F Sbjct: 128 GVLVGYRDGAVEIDVDGVVHRVPHDQIAKAHLEYDF 163 >UniRef50_C6LLB2 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=C6LLB2_9FIRM Length = 201 Score = 171 bits (435), Expect = 5e-42, Method: Composition-based stats. Identities = 56/148 (37%), Positives = 88/148 (59%), Gaps = 2/148 (1%) Query: 5 EQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLD 63 EQK ++ V+A GFELV +E+++ G + LR YID GI VDDC VS + +LD Sbjct: 54 EQKTEAILQPIVDANGFELVDVEYVKEGGSWYLRAYIDKPGGITVDDCELVSRAANDILD 113 Query: 64 VEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGE 123 +D + +Y EVSSPGL RPL + + R +GEEV + A++ ++++ G++KA D E Sbjct: 114 EQDFVEESYIFEVSSPGLGRPLKKEKDFVRSIGEEVEIRTFRAIEKQKEFYGILKAFDKE 173 Query: 124 MITVTVEGK-DEVFALSNIQKANLVPHF 150 +T+ +E + + A ++I L F Sbjct: 174 SVTIVLEDESEMQIARADIALIRLAFDF 201 >UniRef50_B0THQ9 Ribosome maturation factor rimP n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=RIMP_HELMI Length = 154 Score = 171 bits (434), Expect = 6e-42, Method: Composition-based stats. Identities = 52/148 (35%), Positives = 82/148 (55%), Gaps = 1/148 (0%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVL 62 LE +++ VE LG EL+ +E+++ G LRI+ID E GI ++DC +VS ++ +L Sbjct: 7 LEDRVSAWAMPIVEELGLELIDVEWVKEGGNWYLRIFIDKEAGIEMEDCQEVSRRIDEIL 66 Query: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 D EDP+ +Y+LEVSSPG+DRPL + Y RF GE V + V ++ G + + Sbjct: 67 DREDPVAHSYSLEVSSPGIDRPLKSDRDYERFRGETVRITTFAPVMGAKEHLGELAGKNE 126 Query: 123 EMITVTVEGKDEVFALSNIQKANLVPHF 150 I + ++ L+ + L P F Sbjct: 127 TSILIRKNDEEMAIPLTQVSSVRLYPGF 154 >UniRef50_C6D2F6 Putative uncharacterized protein n=3 Tax=Bacillales RepID=C6D2F6_PAESJ Length = 153 Score = 170 bits (433), Expect = 9e-42, Method: Composition-based stats. Identities = 53/150 (35%), Positives = 87/150 (58%), Gaps = 1/150 (0%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSA 60 S ++ + M+T +++ GFELV IE+++ G LR+++D E GI++D+C VS +S Sbjct: 4 SKIKTVVEAMVTPFLDSNGFELVDIEYVKEGSNYFLRVFVDKEGGIDIDECGKVSEFLSE 63 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 LD DP++ AY LEVSSPG +RPL + + VG+ V + + ++++G + A Sbjct: 64 ELDKNDPVSDAYFLEVSSPGAERPLKKPDDVRKAVGKHVYITTYEPIDGSKEFEGQLTAF 123 Query: 121 DGEMITVTVEGKDEVFALSNIQKANLVPHF 150 DGE TV + K+ V + + A L F Sbjct: 124 DGEQATVKIGKKEHVIPYAKVASARLAIVF 153 >UniRef50_A6NTX5 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NTX5_9BACE Length = 151 Score = 168 bits (426), Expect = 6e-41, Method: Composition-based stats. Identities = 52/150 (34%), Positives = 80/150 (53%), Gaps = 1/150 (0%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRG-RTSTLRIYIDSEDGINVDDCADVSHQVS 59 M+ + + + + G + +E++R T LR+Y+D E G+N+DDC VS +S Sbjct: 1 MAKVTELVRALAQPIAAENGCSIWDVEYVREAGTWFLRVYLDKEGGVNIDDCEAVSRPLS 60 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 LD DPI +Y LEVSS G+DR L EH+ F+G EV + L V+ R+ G++KA Sbjct: 61 DALDEADPIEGSYTLEVSSAGIDRVLRHPEHFDAFLGAEVEVRLYRPVEGRKDHVGLLKA 120 Query: 120 VDGEMITVTVEGKDEVFALSNIQKANLVPH 149 D +TVT+ D F ++ + L Sbjct: 121 YDNGDVTVTLPSGDVTFPKKDVAQVRLYVR 150 >UniRef50_B8CW69 Ribosome maturation factor rimP n=1 Tax=Halothermothrix orenii H 168 RepID=RIMP_HALOH Length = 159 Score = 167 bits (425), Expect = 7e-41, Method: Composition-based stats. Identities = 52/154 (33%), Positives = 85/154 (55%), Gaps = 4/154 (2%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDG-INVDDCADVSHQV 58 M + ++ ++ VE+ G ELV +E+++ G LR++I++ +G + +D C +VS + Sbjct: 1 MGKITDRVEDLAQPIVESQGLELVDVEYVKEGENRVLRVFIENPEGEVTLDHCENVSKNL 60 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 LD DPI +Y LEVSSPG++RPL E + RF G+ + V ++ G+IK Sbjct: 61 DEKLDEVDPIQESYILEVSSPGIERPLKKKEDFDRFSGKLAYIKTFAPVSGNKEITGIIK 120 Query: 119 AVDGEMITVT--VEGKDEVFALSNIQKANLVPHF 150 DG+ I V + K+ S I KA+L+ F Sbjct: 121 GRDGDNIKVLKKDDDKELEIPFSQIAKAHLMVDF 154 >UniRef50_D0LZ93 Putative uncharacterized protein n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LZ93_HALO1 Length = 209 Score = 167 bits (425), Expect = 8e-41, Method: Composition-based stats. Identities = 59/168 (35%), Positives = 91/168 (54%), Gaps = 20/168 (11%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIRGR-TSTLRIYIDS---------EDG-----IN 47 ++ ++L + + G+ELV + + R ++++ID G ++ Sbjct: 31 SMTEQLMRIAEPVCASAGYELVDLSLTQSRVGWLVQVFIDHMHSDETSTVAGGEEASEVS 90 Query: 48 VDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAV 107 ++DC VS ++SAVLDVEDP+ AYNLEVSSPGLDRPL T H+ RF G EV + L Sbjct: 91 LEDCEHVSRELSAVLDVEDPLPFAYNLEVSSPGLDRPLRTVAHFQRFAGHEVKVRLDGTG 150 Query: 108 Q--NRRKWQGVIKAVDGE---MITVTVEGKDEVFALSNIQKANLVPHF 150 RR ++G ++AV E I V V+G + +I+ A +VP + Sbjct: 151 DATGRRNFKGRLEAVSAEAPASIVVNVDGAPHTLLIDDIESARVVPDW 198 >UniRef50_Q1NIJ0 Putative uncharacterized protein n=2 Tax=Deltaproteobacteria RepID=Q1NIJ0_9DELT Length = 155 Score = 167 bits (424), Expect = 1e-40, Method: Composition-based stats. Identities = 57/150 (38%), Positives = 84/150 (56%), Gaps = 1/150 (0%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGR-TSTLRIYIDSEDGINVDDCADVSHQVSA 60 L +LTE++ VE G EL ++F R LR+ ID +DG+ +DDC +S +VS Sbjct: 6 KALSARLTELLQPVVEDHGLELADLQFRREPAGWVLRLVIDGDDGVTLDDCTRISREVSH 65 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 +L+VEDPI A+NLEVSSPGLDRPL + Y R G + LV R + G I + Sbjct: 66 LLEVEDPIEQAFNLEVSSPGLDRPLKREQDYRRCRGRKAKLVCREPIAGEPVVIGEIGEM 125 Query: 121 DGEMITVTVEGKDEVFALSNIQKANLVPHF 150 +++T+ E L+ +++A LV + Sbjct: 126 AEQVVTIITEAGPVAVPLAQVKRARLVIEW 155 >UniRef50_A1AML8 Ribosome maturation factor rimP n=8 Tax=Desulfuromonadales RepID=RIMP_PELPD Length = 161 Score = 166 bits (422), Expect = 2e-40, Method: Composition-based stats. Identities = 54/152 (35%), Positives = 87/152 (57%), Gaps = 7/152 (4%) Query: 6 QKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDV 64 ++ + ++++ ELV +E+ R GR + LR++ID E G+ +DDCAD+S ++S +LDV Sbjct: 10 DRIRTLALPVIDSMNLELVEVEYKRSGREAVLRLFIDKEGGVTLDDCADLSRELSTLLDV 69 Query: 65 EDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQN-----RRKWQGVIKA 119 ED I Y+LEVSSPGLDRPL + Y RF G + + Q+ R+ + G ++ Sbjct: 70 EDLIPCEYSLEVSSPGLDRPLKSEADYERFSGRLIKVRTYEPYQDDAGNRRKTFLGRLEG 129 Query: 120 VDGEMITVTV-EGKDEVFALSNIQKANLVPHF 150 + + +++ EG+ L I KA L F Sbjct: 130 LKDGSVVMSLTEGQTASIPLERIAKAQLEFEF 161 >UniRef50_A4BTQ0 Putative uncharacterized protein n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BTQ0_9GAMM Length = 150 Score = 166 bits (421), Expect = 2e-40, Method: Composition-based stats. Identities = 67/150 (44%), Positives = 97/150 (64%), Gaps = 2/150 (1%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGRTS-TLRIYIDSEDGINVDDCADVSHQVS 59 M+ L+ LT+++ V A+G+ELVGIE+ ++ LRIYID DGI+V+DCA VS+Q+S Sbjct: 1 MTALD-TLTKVVEPVVAAMGYELVGIEYRPSKSQALLRIYIDKADGISVEDCALVSNQIS 59 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 VLDVEDP++ Y LEVSSPGL RP+F A Y RF GE V + +R + RR+ G+++ Sbjct: 60 GVLDVEDPLSGRYTLEVSSPGLRRPIFKASDYERFAGELVHIRIRGTLDGRRRIHGLLRG 119 Query: 120 VDGEMITVTVEGKDEVFALSNIQKANLVPH 149 + + + V G + L+ + KANL Sbjct: 120 LRADCVIVVENGIEISVPLNRVDKANLELE 149 >UniRef50_A1WXV3 Ribosome maturation factor rimP n=3 Tax=Gammaproteobacteria RepID=RIMP_HALHL Length = 151 Score = 165 bits (420), Expect = 2e-40, Method: Composition-based stats. Identities = 71/151 (47%), Positives = 94/151 (62%), Gaps = 3/151 (1%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGR-TSTLRIYIDSEDGINVDDCADVSHQVS 59 MS + Q L ++ V LG+ELVG+E + TLR+YID+ GI ++DC VSHQVS Sbjct: 1 MSQI-QTLHSLLEPTVTGLGYELVGVELTGAKGNRTLRVYIDTPAGIRLEDCEAVSHQVS 59 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 +LDVEDPI AYNLEVSSPGLDRP+F + Y RF GE + L L + RR+ +GV+ Sbjct: 60 GLLDVEDPIEGAYNLEVSSPGLDRPIFKSADYDRFSGERIKLRLLELYEGRRRVKGVLLG 119 Query: 120 VDGEMITV-TVEGKDEVFALSNIQKANLVPH 149 +DGE + V V+G + L I +A L Sbjct: 120 LDGEFVRVRDVDGVELRIPLELIDRARLDLE 150 >UniRef50_Q5F799 Ribosome maturation factor rimP n=27 Tax=Neisseria RepID=RIMP_NEIG1 Length = 149 Score = 165 bits (420), Expect = 3e-40, Method: Composition-based stats. Identities = 56/143 (39%), Positives = 81/143 (56%), Gaps = 4/143 (2%) Query: 8 LTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDP 67 + ++ + LG+ELV E TLR++ID E GI V+DCA VS+ +S V VED Sbjct: 9 IQTILEKTLPGLGYELVDFEL--AAQGTLRVFIDKEGGITVEDCATVSNHLSRVFMVEDI 66 Query: 68 ITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITV 127 NLE+SSPGLDRPL A + RF G+ + R+ + ++ + G I+ + + +TV Sbjct: 67 --GYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIGGQKNFIGKIEGCENDTVTV 124 Query: 128 TVEGKDEVFALSNIQKANLVPHF 150 + +GK L NI KA L P F Sbjct: 125 SFDGKTVQIELGNIDKARLRPEF 147 >UniRef50_Q895K1 Ribosome maturation factor rimP n=1 Tax=Clostridium tetani RepID=RIMP_CLOTE Length = 153 Score = 165 bits (420), Expect = 3e-40, Method: Composition-based stats. Identities = 56/149 (37%), Positives = 84/149 (56%), Gaps = 1/149 (0%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSA 60 T L E+ V L +EL +EF+ + + LRIYIDSE GI ++DC VS VSA Sbjct: 4 KTFIDNLKELTEPIVNDLDYELYYLEFVNENKENYLRIYIDSESGIGLEDCEKVSRAVSA 63 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 +LD +DPI +Y LEVSSPGL+R L+ +H +G+ + L RK++G +K+ Sbjct: 64 MLDEKDPIDTSYYLEVSSPGLERQLYDDKHIEDNIGKTACVRLESLFNGGRKFEGKLKSF 123 Query: 121 DGEMITVTVEGKDEVFALSNIQKANLVPH 149 D E +T+ + +D I++ NL+ Sbjct: 124 DNENLTLEINAEDFKIPRKKIKRINLIYE 152 >UniRef50_A1AV97 Ribosome maturation factor rimP n=3 Tax=Bacteria RepID=RIMP_RUTMC Length = 154 Score = 165 bits (418), Expect = 5e-40, Method: Composition-based stats. Identities = 64/154 (41%), Positives = 98/154 (63%), Gaps = 4/154 (2%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFI-RGRTSTLRIYIDSED-GINVDDCADVSHQV 58 M+ + K+T +I ++ + +ELVGIE++ G+ S LR++ID++ G+ V+DC VS Q+ Sbjct: 1 MARVTDKITHLIELVIKDMCYELVGIEYVASGKHSILRVFIDTDKKGVGVNDCEKVSRQL 60 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 S++ DVE+PI+ Y LEVSSPG++RPLF EHY RF+G V L + + RR + GVI Sbjct: 61 SSIFDVEEPISGQYTLEVSSPGIERPLFHKEHYQRFLGANVKLRMVRPIDGRRNFFGVIG 120 Query: 119 AVDGEMITVTVEGK--DEVFALSNIQKANLVPHF 150 V+ T + G+ + + I+KANLV F Sbjct: 121 CVNEADNTFELVGELDLVILDIDLIEKANLVVDF 154 >UniRef50_Q3A4B0 Ribosome maturation factor rimP n=3 Tax=Desulfuromonadales RepID=RIMP_PELCD Length = 162 Score = 164 bits (417), Expect = 7e-40, Method: Composition-based stats. Identities = 59/159 (37%), Positives = 89/159 (55%), Gaps = 10/159 (6%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSA 60 T+ K+ ++ +E G ELV +E+ R G+ LR+YID G+ +D CA+VS +V Sbjct: 4 QTVLDKIRSLVLPVLEEKGRELVDVEYRREGQGWILRLYIDQPGGVTLDACAEVSREVGV 63 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQ------NRRKWQ 114 +L+VEDPI AYNLEVSSPGLDRPL E Y RF G + R+++ R+ + Sbjct: 64 LLEVEDPIDTAYNLEVSSPGLDRPLTKLEDYERFAGRLAKVKSRVSIDVDGKGRGRKTFV 123 Query: 115 GVIKAVDGEMITVTVEGKD---EVFALSNIQKANLVPHF 150 GV+ + + + ++ K+ +I+KANL F Sbjct: 124 GVLAGLSEGKVVLELKDKNGFRMEIPFEDIEKANLEIEF 162 >UniRef50_B5EMC8 Ribosome maturation factor rimP n=2 Tax=Acidithiobacillus ferrooxidans RepID=RIMP_ACIF5 Length = 153 Score = 164 bits (417), Expect = 7e-40, Method: Composition-based stats. Identities = 60/153 (39%), Positives = 84/153 (54%), Gaps = 3/153 (1%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSED--GINVDDCADVSHQ 57 M +E +L E I G LV +R GR L+++I+ ++ + ++DCA VS Q Sbjct: 1 MVNVEDRLYEGIAQQAGIAGCTLVDARMVRTGRAVALQVFIEKDETTAVTIEDCAAVSRQ 60 Query: 58 VSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI 117 +S LDVE+PI AY LEVSSPGLDRPL + RF G + + L Q RR+ QG + Sbjct: 61 LSLWLDVENPIHGAYRLEVSSPGLDRPLKNLHDFERFKGSQAEIHLHGLTQGRRRLQGEL 120 Query: 118 KAVDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 V+ + I + FAL +I KA LVP + Sbjct: 121 LGVEDQKIVLKNAEGRWTFALDDIHKARLVPQW 153 >UniRef50_C0GUB7 Putative uncharacterized protein n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GUB7_9DELT Length = 154 Score = 163 bits (414), Expect = 1e-39, Method: Composition-based stats. Identities = 48/150 (32%), Positives = 85/150 (56%), Gaps = 4/150 (2%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRG---RTSTLRIYIDSEDGINVDDCADVSHQV 58 +++++ E++ +G E G++F+ G + LR+++DS +G+++D CAD+S Q+ Sbjct: 4 QEIKKQVEELVQTNCRLMGLEPWGMDFVPGTGKQRGVLRVFVDSPEGVSIDQCADLSRQL 63 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 S LDVED + +YNLEVSSPGL+R F E + + G +V + L+ R+ + G ++ Sbjct: 64 SVALDVEDLVPGSYNLEVSSPGLNRRFFRPEQMSGYTGHKVKITLKEPRDGRKNFTGTLQ 123 Query: 119 AVDGEMITVTV-EGKDEVFALSNIQKANLV 147 + E I++ F I +A LV Sbjct: 124 EAENETISIQTSPDCTWSFQWDEIDRARLV 153 >UniRef50_A9VT54 Ribosome maturation factor rimP n=6 Tax=Bacillus RepID=RIMP_BACWK Length = 156 Score = 163 bits (414), Expect = 1e-39, Method: Composition-based stats. Identities = 47/154 (30%), Positives = 82/154 (53%), Gaps = 5/154 (3%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSA 60 + + + VE L ELV +E+++ G+ LR++IDSE G+ +++C VS ++S Sbjct: 3 KKVTEIVEAFAQPIVEELNLELVDVEYVQEGQDWFLRVFIDSEKGVEIEECGAVSERLSE 62 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 LD EDPI Y L+VSSPG +RPL + + + VG++V + + + ++G + + Sbjct: 63 ALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYKPIDGEKMFEGKLLSY 122 Query: 121 DGEMITVTV----EGKDEVFALSNIQKANLVPHF 150 DG IT+ + K+ + + A L F Sbjct: 123 DGNTITLLLTIKTRKKEIQIPMDKVANARLAVTF 156 >UniRef50_C4V3N9 Protein of hypothetical function DUF150 n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V3N9_9FIRM Length = 163 Score = 163 bits (414), Expect = 1e-39, Method: Composition-based stats. Identities = 51/150 (34%), Positives = 81/150 (54%), Gaps = 4/150 (2%) Query: 2 STLEQKLTEMITAPVEAL-GFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSA 60 + +E+++ EM+ + L ELV +E+++ R S LR+YID GI++DDC +S ++ Sbjct: 17 AKIEERVEEMVRGLLTDLPAIELVDVEYVKERDSYLRVYIDKTGGIDIDDCQSLSERLEE 76 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 +LD ED I AY LEVSSPGLDR L + R G V + L + +++W G + Sbjct: 77 MLDREDFIPDAYILEVSSPGLDRVLRKERDFTREHGRTVDVTLYAPFEGKKQWTGTLAGY 136 Query: 121 DGEMITVTVEGKDEVFALSNIQKANLVPHF 150 DGE +T+ + + + L F Sbjct: 137 DGETLTLDD---GVQIPMKQVSQVRLHIDF 163 >UniRef50_A9HF10 Ribosome maturation factor rimP n=10 Tax=Acetobacteraceae RepID=RIMP_GLUDA Length = 207 Score = 163 bits (414), Expect = 1e-39, Method: Composition-based stats. Identities = 50/150 (33%), Positives = 87/150 (58%), Gaps = 3/150 (2%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG--INVDDCADVSHQV 58 ++ L+ K+ ++ + +GFELV + + + T++I D DG I ++DC +SH V Sbjct: 8 LTGLDAKVAAIVAPVLADMGFELVRVAILGRESPTVQIMADRADGTLIAIEDCEQISHAV 67 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 AVLDVEDP+ A+ LEVSS G+DRPL A+ + RF G + + + R+++ G++ Sbjct: 68 GAVLDVEDPLPGAWTLEVSSAGIDRPLTRAKDWTRFAGHLAKAEVNIPIDGRKRFSGILL 127 Query: 119 AVDGEMITVTVE-GKDEVFALSNIQKANLV 147 + + +E G + LS++++A LV Sbjct: 128 GAEDGFGRLRLEDGTEVALPLSDMRRARLV 157 >UniRef50_C3P5L9 Ribosome maturation factor rimP n=253 Tax=Firmicutes RepID=RIMP_BACAA Length = 156 Score = 163 bits (413), Expect = 2e-39, Method: Composition-based stats. Identities = 47/154 (30%), Positives = 83/154 (53%), Gaps = 5/154 (3%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSA 60 + + + VE L ELV +E+++ G+ LR++IDSE G+++++C VS ++S Sbjct: 3 KKVTEVVEAFAQPIVEELNLELVDVEYVKEGQDWFLRVFIDSEKGVDIEECGAVSERLSE 62 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 LD EDPI Y L+VSSPG +RPL + + + VG++V + + + ++G + + Sbjct: 63 ALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYEPIDGEKMFEGKMLSY 122 Query: 121 DGEMITVTV----EGKDEVFALSNIQKANLVPHF 150 DG IT+ + K+ + + A L F Sbjct: 123 DGTTITLLLTIKTRKKEIQIPMDKVANARLAVTF 156 >UniRef50_C7LRI2 Putative uncharacterized protein n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LRI2_DESBD Length = 162 Score = 163 bits (413), Expect = 2e-39, Method: Composition-based stats. Identities = 55/151 (36%), Positives = 91/151 (60%), Gaps = 3/151 (1%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFI---RGRTSTLRIYIDSEDGINVDDCADVSHQV 58 + + +L EM+T EA E+ GIE + GR +R+Y+DS+ G+ +D+C++VS + Sbjct: 4 NEIHARLMEMVTPLCEARDLEVWGIELLFAAGGRHKIVRVYLDSQQGVGIDECSEVSRHL 63 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 S LDVED I A+NLEVSSPGL+RP F+ E +VG+ V + L ++ R+ ++G + Sbjct: 64 SLALDVEDIIPGAFNLEVSSPGLERPFFSTEQMLPYVGQTVRIRLDNPLEGRKNFKGRLL 123 Query: 119 AVDGEMITVTVEGKDEVFALSNIQKANLVPH 149 +++ M T++ + ++ KANLV Sbjct: 124 SIESPMFTLSDDSTTFELNWDDVGKANLVYE 154 >UniRef50_C4Z5N3 Ribosome maturation factor rimP n=10 Tax=Bacteria RepID=RIMP_EUBE2 Length = 156 Score = 162 bits (412), Expect = 2e-39, Method: Composition-based stats. Identities = 51/144 (35%), Positives = 82/144 (56%), Gaps = 1/144 (0%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAV 61 + E K TE+I VEA G EL +++++ G LR+YID E G+ +DDC +VS + + Sbjct: 6 SYEAKTTELIQPVVEANGVELFDVDYVKEGSDWYLRVYIDKEGGVTIDDCQNVSRAFNEI 65 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 LD E+ I Y EVSSPGL RPL + Y + +G + + L V +++ GV+K D Sbjct: 66 LDRENYIDDQYIFEVSSPGLTRPLKKEKDYEKSIGRMIEIKLFSPVDKSKEYSGVLKEYD 125 Query: 122 GEMITVTVEGKDEVFALSNIQKAN 145 + +T++++ + F SN+ Sbjct: 126 KDTVTISIDDVTKTFDRSNLAMIR 149 >UniRef50_C7MNM1 Uncharacterized conserved protein n=4 Tax=Coriobacteriaceae RepID=C7MNM1_CRYCD Length = 177 Score = 162 bits (411), Expect = 3e-39, Method: Composition-based stats. Identities = 55/149 (36%), Positives = 85/149 (57%), Gaps = 3/149 (2%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGRT-STLRIYIDSEDGINVDDCADVSHQVS 59 ++ E +L E + G E+V IE + R T+R++ID+ DG++ D A ++ Sbjct: 21 LTGKETRLLEALEPTAREKGIEIVSIEIVGSRKAPTIRVFIDTPDGVSFDALASAQSWIN 80 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 ++D DP AY LEVSSPG+DRPL T EH+ RF G+E +VLR + R K+ G++K Sbjct: 81 EIMDAIDPFPGAYMLEVSSPGIDRPLRTPEHFQRFSGQEAQIVLRAPIDGRSKFTGMLKG 140 Query: 120 VDGEMITVTVEGKDEV--FALSNIQKANL 146 + + V+G DEV I++A+L Sbjct: 141 FADGAVLLLVDGADEVTSINYDAIKRAHL 169 >UniRef50_B4U6H1 Ribosome maturation factor rimP n=3 Tax=Aquificaceae RepID=RIMP_HYDS0 Length = 154 Score = 162 bits (411), Expect = 3e-39, Method: Composition-based stats. Identities = 53/148 (35%), Positives = 80/148 (54%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAV 61 + + +++ + LGF L +EF LRI ID E G+ +DDC ++S +VSA+ Sbjct: 5 KKIATTVKDLVKPISDNLGFRLFDVEFKPENGWVLRIIIDKEGGVTIDDCEELSKRVSAL 64 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 LDVED IT +Y LEVSSPGL R L HY F G+ L L+ + N++++ G I +V+ Sbjct: 65 LDVEDVITSSYFLEVSSPGLTRELKEKWHYEFFKGKYARLYLKEKIDNKQEYAGYIDSVE 124 Query: 122 GEMITVTVEGKDEVFALSNIQKANLVPH 149 + + + + K I KA L Sbjct: 125 DDTLVLRLLDKTLKIPFDKIAKARLDVE 152 >UniRef50_Q1GXD8 Ribosome maturation factor rimP n=16 Tax=Betaproteobacteria RepID=RIMP_METFK Length = 144 Score = 162 bits (410), Expect = 4e-39, Method: Composition-based stats. Identities = 56/145 (38%), Positives = 84/145 (57%), Gaps = 2/145 (1%) Query: 6 QKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVE 65 Q L ++ + LG+ELV +E R +R++ID +GIN+DDC VS+ +S +L VE Sbjct: 2 QDLNALLERSLGQLGYELVDMEL-ANRGKLIRLFIDKPEGINIDDCVLVSNHLSNLLAVE 60 Query: 66 DPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMI 125 I LE+SSPGLDR L + RF GE + LRM ++ R+ + G+++ VD E + Sbjct: 61 HDIDYD-RLEISSPGLDRVLKKTSDFVRFAGERAQVKLRMPIEGRKNFLGILRGVDQEYL 119 Query: 126 TVTVEGKDEVFALSNIQKANLVPHF 150 + +G ++ SNI KA L P F Sbjct: 120 VLECDGVEQRVPFSNIDKARLSPEF 144 >UniRef50_A9KNW8 Ribosome maturation factor rimP n=13 Tax=Clostridiales RepID=RIMP_CLOPH Length = 155 Score = 162 bits (410), Expect = 4e-39, Method: Composition-based stats. Identities = 57/155 (36%), Positives = 86/155 (55%), Gaps = 5/155 (3%) Query: 1 MSTLEQ---KLTEMITAPVEALGFELVGIEFIRG-RTSTLRIYIDSEDGINVDDCADVSH 56 M+ E+ K +++T +E FELV +E+++ LR YID E GI VDDC VS Sbjct: 1 MTKREEYELKAEQLLTPIMEENNFELVDVEYVKEVGNWYLRAYIDKEGGITVDDCEVVSR 60 Query: 57 QVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGV 116 + S +LD +D I AY LEVSSPGL R L + + R +GEEV + L A+ ++ ++G+ Sbjct: 61 RFSDLLDEKDFIPDAYILEVSSPGLGRQLKKDKDFKRSLGEEVEIKLYKAINKQKDFEGI 120 Query: 117 IKAVDGEMITVT-VEGKDEVFALSNIQKANLVPHF 150 + D E + + +G FA ++I L F Sbjct: 121 LTDFDQEKLIIEQADGTTMEFARADIAMVRLALDF 155 >UniRef50_B9E1J8 Ribosome maturation factor rimP n=15 Tax=Clostridium RepID=RIMP_CLOK1 Length = 154 Score = 161 bits (409), Expect = 6e-39, Method: Composition-based stats. Identities = 59/145 (40%), Positives = 93/145 (64%), Gaps = 2/145 (1%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDG-INVDDCADVSHQVSAV 61 L +++ ++I V+ L FEL +EF R G + LRI+ID E+G I+++DC VS VS + Sbjct: 6 LVERVLKLIKPIVDNLNFELYHLEFKREGNNNYLRIFIDKEEGNISLEDCEAVSRAVSDI 65 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 LD EDPI Y LEVSSPG++R L+T EH R++G V + ++ ++ ++K+QG + + D Sbjct: 66 LDREDPIRDPYYLEVSSPGIERTLYTHEHLKRYIGFNVIVNIQGLLKGKKKYQGKLLSFD 125 Query: 122 GEMITVTVEGKDEVFALSNIQKANL 146 ++ V+ EG++ V S I NL Sbjct: 126 ESVLRVSCEGEEIVIPKSKISTVNL 150 >UniRef50_D1BM56 Putative uncharacterized protein n=4 Tax=Veillonellaceae RepID=D1BM56_VEIPT Length = 152 Score = 160 bits (407), Expect = 8e-39, Method: Composition-based stats. Identities = 51/148 (34%), Positives = 83/148 (56%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVL 62 +E+ ++ ++ + ELV ++++R R LR+Y+D G+++DDC VS ++SAVL Sbjct: 5 AVEEFVSSVVEGIIAGTDMELVDVDYVRERDWYLRVYLDKPGGVDLDDCQLVSEKLSAVL 64 Query: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 D +DPIT Y LEVSSPGLDR L + R+ G +V + L A+ +++ G ++ Sbjct: 65 DEKDPITENYLLEVSSPGLDRVLKKDKDLVRYNGRDVDIQLFKAINGSKQFTGALQGFTD 124 Query: 123 EMITVTVEGKDEVFALSNIQKANLVPHF 150 I T+ G+ F S I + L F Sbjct: 125 TTIEFTINGESMTFERSTIAQIRLHLDF 152 >UniRef50_A8MHI0 Ribosome maturation factor rimP n=11 Tax=Clostridia RepID=RIMP_ALKOO Length = 154 Score = 160 bits (407), Expect = 9e-39, Method: Composition-based stats. Identities = 55/148 (37%), Positives = 77/148 (52%), Gaps = 3/148 (2%) Query: 6 QKLTE-MITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLD 63 +K+TE ++ ++ FELV +E+ + G LRIYID GI +DDC VS Q+ LD Sbjct: 7 EKITERLVMPIIQNENFELVDLEYKKEGSNWYLRIYIDKPGGITLDDCQKVSEQLGEELD 66 Query: 64 VEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGE 123 EDPI+ Y LEVSSPGLDRPL + RF GE V + L A+ + +G + ++ Sbjct: 67 REDPISENYFLEVSSPGLDRPLKKDSDFIRFAGEIVEVKLYEALNGNKVIEGELVGLEEN 126 Query: 124 MITVTVEGKD-EVFALSNIQKANLVPHF 150 MI + V + L F Sbjct: 127 MIKINVANVGLLELPKEKVALTRLAVKF 154 >UniRef50_C6C0D6 Ribosome maturation factor rimP n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=RIMP_DESAD Length = 155 Score = 160 bits (407), Expect = 1e-38, Method: Composition-based stats. Identities = 51/150 (34%), Positives = 93/150 (62%), Gaps = 2/150 (1%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVL 62 +L +K+++ + +E++G L G+E + IYIDSE+G+++D CA+VS V +L Sbjct: 5 SLAKKVSQFVEPTIESMGLTLWGVEVTSANRPAVIIYIDSENGVSIDQCAEVSRDVGLML 64 Query: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 +VE+ I AY LEVSSPGL+R F E + +VG+++ + L +++ R+K++G+++ D Sbjct: 65 EVEEVIDSAYVLEVSSPGLERKFFKPEQMSAYVGKKIDIALVFSLEGRKKFKGLLQETDE 124 Query: 123 EMITVTVEGKD--EVFALSNIQKANLVPHF 150 E + + +E ++ I+KA L+ F Sbjct: 125 EGLLLKLEDQEDPIKIEWDRIKKAKLIHEF 154 >UniRef50_B6IVF3 Ribosome maturation factor rimP n=1 Tax=Rhodospirillum centenum SW RepID=RIMP_RHOCS Length = 252 Score = 160 bits (405), Expect = 1e-38, Method: Composition-based stats. Identities = 50/126 (39%), Positives = 81/126 (64%), Gaps = 2/126 (1%) Query: 6 QKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG--INVDDCADVSHQVSAVLD 63 +++ +I VEA+G+ELV ++ G+ TL+I + DG + V+DCAD+S VSA+LD Sbjct: 5 ERIGRIIEPSVEAMGYELVRVQLSGGQRPTLQIMAERSDGAAMTVEDCADISRAVSALLD 64 Query: 64 VEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGE 123 VEDP+ AY LEVSSPG+DRPL + + RF G E L + V R++++G + ++ + Sbjct: 65 VEDPLPGAYTLEVSSPGIDRPLTRLKDFERFAGFEARLETKAPVDGRKRFRGFLAGIEDD 124 Query: 124 MITVTV 129 + + + Sbjct: 125 AVRLAL 130 >UniRef50_Q72EQ8 Ribosome maturation factor rimP n=3 Tax=Desulfovibrio vulgaris RepID=RIMP_DESVH Length = 172 Score = 160 bits (405), Expect = 2e-38, Method: Composition-based stats. Identities = 58/160 (36%), Positives = 92/160 (57%), Gaps = 11/160 (6%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAV 61 L+ + +M + +LG EL GIE G + +R+++D +G+ +D CA+VS V Sbjct: 4 QALDATIADMAGPFLASLGLELWGIELSYGGRTVVRLFVDGPEGVTIDQCAEVSRHVGLA 63 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAV---QNRRKWQGVIK 118 L+VED I+ AY LEVSSPGL+RP F AE + +VG ++ L L RRK++G + Sbjct: 64 LEVEDVISSAYVLEVSSPGLERPFFRAEQMSPYVGRQIELTLIDPTPEWPGRRKFRGELL 123 Query: 119 AVDGEMITVTVEG------KDEVF--ALSNIQKANLVPHF 150 AV+G+ + + EG ++ V + ++KANL+ F Sbjct: 124 AVEGDTVVLRPEGAPAPEAEEAVLRTSWQGVRKANLIHVF 163 >UniRef50_Q2VZU7 Ribosome maturation factor rimP n=4 Tax=Alphaproteobacteria RepID=RIMP_MAGSA Length = 166 Score = 159 bits (404), Expect = 2e-38, Method: Composition-based stats. Identities = 55/150 (36%), Positives = 90/150 (60%), Gaps = 5/150 (3%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGI--NVDDCADVSHQVSA 60 L+ +L +I ++A+G+ELV ++ + TL+I D +DG+ VDDCAD+S VSA Sbjct: 2 DLQSRLEALIAPSLDAMGYELVRVQLQGKQRLTLQIMADRKDGVMMAVDDCADISRSVSA 61 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 +LDVEDPI+ AY LEVSSPG+DRPL A+ + + G E + + R++++G + + Sbjct: 62 LLDVEDPISAAYTLEVSSPGIDRPLTRAKDFVAWAGFEAKMESCQPIDGRKRFRGKLLGL 121 Query: 121 DGEMITVTV---EGKDEVFALSNIQKANLV 147 D + V + + L++++ A LV Sbjct: 122 DEAGVNVRLVIEAAGEIAIPLADVRGAKLV 151 >UniRef50_D2RKW8 Putative uncharacterized protein n=2 Tax=Acidaminococcus RepID=D2RKW8_ACIFE Length = 153 Score = 159 bits (404), Expect = 2e-38, Method: Composition-based stats. Identities = 48/150 (32%), Positives = 78/150 (52%), Gaps = 1/150 (0%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAV 61 + +++T++ VE G ELV +E++R R LR++ID GI++DDC+ VS+ ++ Sbjct: 4 KKITERVTDLAAPIVEEAGLELVDVEYVRERDWFLRVFIDKAGGIDIDDCSAVSNALAKK 63 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 LD ED I Y LEVSSPG+DRPL + G++V L + +++ V+K+ D Sbjct: 64 LDEEDFIKEKYYLEVSSPGIDRPLKKDKDLEAHYGQKVDLAFFAPYEGKKQLTAVLKSHD 123 Query: 122 GEMITVTV-EGKDEVFALSNIQKANLVPHF 150 E + + + K I F Sbjct: 124 AEKLVLEDAKKKKLAIERKLIASVRPHIDF 153 >UniRef50_Q67P90 Ribosome maturation factor rimP n=2 Tax=Clostridiales RepID=RIMP_SYMTH Length = 160 Score = 159 bits (403), Expect = 3e-38, Method: Composition-based stats. Identities = 54/155 (34%), Positives = 80/155 (51%), Gaps = 6/155 (3%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSA 60 LE+ + E+ ALG ELVG+E ++ G LR+YID E G+ DDC +S V A Sbjct: 6 KRLEELVEELAAPHAAALGLELVGVELVKEGAYRYLRVYIDKEGGVGFDDCEALSRVVDA 65 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 LD P EVSSPGLDRPL +AR+VG +V + V ++ + G ++ + Sbjct: 66 QLDEILPNPPYDFFEVSSPGLDRPLKREADFARYVGHKVVVTTYAPVDGQKSFVGELQGL 125 Query: 121 DGEMITVTV---EGKDEVFALS--NIQKANLVPHF 150 +T+T+ +G+ + AL + A L F Sbjct: 126 VDGRVTLTLTEGKGRGQTIALDRKQVASARLYVEF 160 >UniRef50_Q2LWU4 Ribosome maturation factor rimP n=1 Tax=Syntrophus aciditrophicus SB RepID=RIMP_SYNAS Length = 160 Score = 159 bits (402), Expect = 3e-38, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 84/155 (54%), Gaps = 5/155 (3%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGR-TSTLRIYIDSEDGINVDDCADVSHQVS 59 + L + + ++ + + G ELV +E +R + +RIY+D E G+ +DDC+++S+Q+ Sbjct: 6 VKKLREDIWQLAEPVIASEGLELVEVECLRMKTRWLVRIYMDREGGVTLDDCSEISNQLG 65 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 VLDV D Y LEVSSPGLDRPL + + R+ G EV++ L V R ++G + Sbjct: 66 DVLDVHDLPPDPYTLEVSSPGLDRPLVRDKDFVRYQGCEVSIRLEQKVDGIRNFRGRLLE 125 Query: 120 VDGE----MITVTVEGKDEVFALSNIQKANLVPHF 150 E ++ + + K I KANLV F Sbjct: 126 YVEEDGRKILVIEMASKLYRIPRDLIVKANLVYRF 160 >UniRef50_A5EWZ1 Ribosome maturation factor rimP n=1 Tax=Dichelobacter nodosus VCS1703A RepID=RIMP_DICNV Length = 155 Score = 159 bits (402), Expect = 3e-38, Method: Composition-based stats. Identities = 64/156 (41%), Positives = 92/156 (58%), Gaps = 7/156 (4%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFI-RGRTSTLRIYIDS-EDGINVDDCADVSHQV 58 MS EQ +TE++ VE++GF G+E+ S LRIY+D+ E GI +DD ++ Q+ Sbjct: 1 MSQ-EQVVTELLRPIVESMGFIWWGLEYHYNSMNSILRIYVDTQEGGIGIDDIVTITEQL 59 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 + +LDVE PIT Y LEVSSPGLDR LFT +F+G V LR + +RK+QG++ Sbjct: 60 NPILDVEQPITTNYTLEVSSPGLDRILFTLAQCEQFIGATVHCRLRFPFEGKRKFQGIMT 119 Query: 119 AVDGE----MITVTVEGKDEVFALSNIQKANLVPHF 150 AVD + +T+ + + I KA +VP F Sbjct: 120 AVDHDKETISLTLADGAAEVHLPFTQIDKARIVPQF 155 >UniRef50_C8NBH5 BCR/YhbC family protein n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NBH5_9GAMM Length = 157 Score = 158 bits (401), Expect = 4e-38, Method: Composition-based stats. Identities = 64/154 (41%), Positives = 94/154 (61%), Gaps = 8/154 (5%) Query: 5 EQKLTEMITAPVEALGFELVGIEFIRGR-TSTLRIYIDS-EDGINVDDCADVSHQVSAVL 62 E+++TE++ VE++GFE VG+E+ + LRIY+D E GI+++ +V+ V+ +L Sbjct: 4 EERVTELLKPVVESMGFEWVGVEYHHNSVNAILRIYVDRPEGGIDMEGVVEVTEAVNPIL 63 Query: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 DVEDPI Y LEVSSPGLDRPLF+ + RF GE + L V RR+++GVI++ D Sbjct: 64 DVEDPINAPYTLEVSSPGLDRPLFSFADFVRFTGETAKVHLHAPVGKRRRFEGVIESTDE 123 Query: 123 --EMITVTVEG----KDEVFALSNIQKANLVPHF 150 + IT V + +N+ KA LVP F Sbjct: 124 TAQRITFAVRQGRAVEAVEVDYANVDKARLVPVF 157 >UniRef50_D1U698 Putative uncharacterized protein n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U698_9DELT Length = 156 Score = 158 bits (401), Expect = 5e-38, Method: Composition-based stats. Identities = 66/153 (43%), Positives = 89/153 (58%), Gaps = 5/153 (3%) Query: 3 TLEQKLTEMITAPVEALGFELVGI-EFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAV 61 T E L ++I VE LG L G+ +G +RIYID DG+ +D CA VS QVS + Sbjct: 4 TFEDTLADIIRPEVEGLGCTLWGLASPSKGERRIIRIYIDGPDGVTIDQCAKVSRQVSLL 63 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 L+VED I AY LEVSSPGLDR F+ A FVG++VT +L A RRK GV+K++ Sbjct: 64 LEVEDTIPGAYILEVSSPGLDRRFFSTAQMADFVGKQVTALLYEARDGRRKVTGVLKSIG 123 Query: 122 G----EMITVTVEGKDEVFALSNIQKANLVPHF 150 E T+ G+D A +++++ LV F Sbjct: 124 ADAGQESFTLDEGGQDVTLAWNDLKEVRLVHEF 156 >UniRef50_Q01W33 Ribosome maturation factor rimP n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=RIMP_SOLUE Length = 153 Score = 158 bits (400), Expect = 5e-38, Method: Composition-based stats. Identities = 49/150 (32%), Positives = 78/150 (52%), Gaps = 2/150 (1%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIRGRT-STLRIYIDSEDGINVDDCADVSHQVSAV 61 + K+ E+ ++ G ELV +E G + +RI ID +G+ DC VS +V + Sbjct: 4 AVTSKVEEVAQRVAQSEGLELVEVEVKGGGSARLVRISIDKPEGVTHADCQTVSDKVGEI 63 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 L+ ED I Y LEVSSPG++R L + Y RF G++ + +R V RR W+G + Sbjct: 64 LEAEDAIPGHYTLEVSSPGVERKLLKPQDYQRFHGQKAKITVREEVDGRRTWEGTLAGFA 123 Query: 122 GEMITVTVE-GKDEVFALSNIQKANLVPHF 150 +I++ V G+ ++KANL + Sbjct: 124 DGVISLEVAPGEIRRLPFDQVKKANLKFEW 153 >UniRef50_A8GW29 Ribosome maturation factor rimP n=13 Tax=Rickettsia RepID=RIMP_RICB8 Length = 168 Score = 157 bits (399), Expect = 8e-38, Method: Composition-based stats. Identities = 54/149 (36%), Positives = 87/149 (58%), Gaps = 2/149 (1%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDS--EDGINVDDCADVSHQV 58 M T+EQ++T++I + +GFELV + + + I ID + + ++DC S+ + Sbjct: 1 MQTIEQQITDLIQETLSDMGFELVLVRVKGLSSKVVEILIDRLDDQKVTIEDCTKASNTI 60 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 SA+LDVED I AY LEVSS G++RPL E+Y RF+G EV + L+ + R ++QG I Sbjct: 61 SAILDVEDLIEEAYYLEVSSSGVERPLVKFENYKRFIGREVKIKLKELLNGRSRYQGTII 120 Query: 119 AVDGEMITVTVEGKDEVFALSNIQKANLV 147 + + + E ++ + I+ ANLV Sbjct: 121 EAKDDKVYLKWEDQEVIINYDLIKSANLV 149 >UniRef50_C9KKC0 Putative uncharacterized protein n=2 Tax=Veillonellaceae RepID=C9KKC0_9FIRM Length = 211 Score = 157 bits (397), Expect = 1e-37, Method: Composition-based stats. Identities = 44/150 (29%), Positives = 76/150 (50%), Gaps = 4/150 (2%) Query: 2 STLEQKLTEMITAPVEALG-FELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSA 60 +E + ++ ++ ELV E+++ LR+YID E GI+++DC +S ++ Sbjct: 65 QQVEDAVEAIVQELLKDQDVIELVDAEYVKEHDWYLRVYIDKEGGIDIEDCQALSEKLEE 124 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 LD D + +Y LEVSSPG+DR L + R G++V + L + ++ G + Sbjct: 125 ALDKGDVVPDSYILEVSSPGIDRVLRKPRDFTREQGKKVDVTLYAPREGKKLVVGELTGF 184 Query: 121 DGEMITVTVEGKDEVFALSNIQKANLVPHF 150 DG+ I + E K L++I + L F Sbjct: 185 DGDAIELDGETK---IPLADIAQVRLHIDF 211 >UniRef50_C5VSJ6 Putative uncharacterized protein n=1 Tax=Clostridium botulinum D str. 1873 RepID=C5VSJ6_CLOBO Length = 154 Score = 157 bits (397), Expect = 1e-37, Method: Composition-based stats. Identities = 55/146 (37%), Positives = 84/146 (57%), Gaps = 1/146 (0%) Query: 6 QKLTEMITAPVEALGFELVGIEFIRGRT-STLRIYIDSEDGINVDDCADVSHQVSAVLDV 64 K+ E++ VE L +EL IE++R + + LRIYIDS GIN++DC VS +VS +LD Sbjct: 9 DKINELVRPIVEGLNYELYYIEYVREQNENYLRIYIDSSKGINLEDCEKVSRKVSDMLDE 68 Query: 65 EDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEM 124 +DPI Y LEVSSPG++R L T EH +++ ++ + L + R+ QG + + E Sbjct: 69 KDPIEDGYYLEVSSPGIERVLHTDEHLHKYINNQIVIKLAKLFEGSREHQGKLLNFNDES 128 Query: 125 ITVTVEGKDEVFALSNIQKANLVPHF 150 IT+ + + I+K L F Sbjct: 129 ITIQKDNESISIPRDRIKKIILKGEF 154 >UniRef50_Q1GCH5 Ribosome maturation factor rimP n=5 Tax=Rhodobacterales RepID=RIMP_SILST Length = 203 Score = 156 bits (396), Expect = 2e-37, Method: Composition-based stats. Identities = 61/151 (40%), Positives = 90/151 (59%), Gaps = 5/151 (3%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSA 60 + ++++L E+IT +E LG+ELV I + G+T+TL+I D DG I VDDCA +S+ VSA Sbjct: 9 AAIDRRLAEIITPVIEDLGYELVRIRLMSGKTTTLQIMADRPDGGIEVDDCAAISNAVSA 68 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 LDVEDPI AY LEVSSPG+DRPL + + F G E L + RR+++G + + Sbjct: 69 TLDVEDPILDAYTLEVSSPGIDRPLTRLKDFDMFEGYEAKLETADLIDGRRRFKGELAGI 128 Query: 121 DGEMITVTVEGKDEVFA----LSNIQKANLV 147 + + + + +E E + A LV Sbjct: 129 EDDEVLINIEEHGETVTIGLKFDWLSDAKLV 159 >UniRef50_C0QTL6 Ribosome maturation factor rimP n=4 Tax=Hydrogenothermaceae RepID=RIMP_PERMH Length = 151 Score = 155 bits (394), Expect = 3e-37, Method: Composition-based stats. Identities = 56/148 (37%), Positives = 86/148 (58%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAV 61 + +K+ EM+ +E G +LV IE++ LRIYI + +G ++DC +S ++ A+ Sbjct: 3 QEIIEKVKEMLQPLLEERGLKLVDIEYVTEGKPVLRIYIYNPEGTTIEDCEWISRRIGAL 62 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 LD+ED I V+Y LEVSSPGL+R L E Y F G ++ +VL+ V + +GV+K + Sbjct: 63 LDIEDLIPVSYTLEVSSPGLERKLKNVEEYDIFKGRDIKIVLKEPVDKKNVIKGVLKGRE 122 Query: 122 GEMITVTVEGKDEVFALSNIQKANLVPH 149 I V EG++ L NI +ANL Sbjct: 123 DNNIIVEEEGEEVRIPLENIARANLEFK 150 >UniRef50_A0LHL6 Ribosome maturation factor rimP n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=RIMP_SYNFM Length = 168 Score = 155 bits (393), Expect = 3e-37, Method: Composition-based stats. Identities = 50/144 (34%), Positives = 84/144 (58%), Gaps = 1/144 (0%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVL 62 + +++ ++ + A G E++ IE+ R LR+++D E G++VDDCA +S V +L Sbjct: 17 IVRQVWDLTEPVIRAEGMEIIEIEYRRESPGWVLRVFVDQEGGVSVDDCARISRVVGDLL 76 Query: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 DV D I Y+LEVSSPGL+RPL E +A+ VG+ + + + RR ++G++K V Sbjct: 77 DVADIIHYPYHLEVSSPGLNRPLRKREQFAKVVGKVIEVKTLVPFGTRRNFKGILKEVGV 136 Query: 123 EMITVTVEGKDEVFALSNIQKANL 146 E I + + + SN+ +A L Sbjct: 137 ERIRMDCDNQLFEIPFSNMDRARL 160 >UniRef50_A1B584 Ribosome maturation factor rimP n=28 Tax=Bacteria RepID=RIMP_PARDP Length = 206 Score = 155 bits (393), Expect = 4e-37, Method: Composition-based stats. Identities = 64/155 (41%), Positives = 94/155 (60%), Gaps = 9/155 (5%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDS-EDGINVDDCADVSHQVSA 60 + ++++L E+I+ +E LGFELV I G+T+TL+I D E GINVDDCAD+S VSA Sbjct: 8 TAIDRRLAEIISPVIEDLGFELVRIRLQGGKTATLQIMADRPEGGINVDDCADISTAVSA 67 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 +LDVEDP+ AY+LEVSSPG+DRPL + + F G E L + R++++GV+ V Sbjct: 68 ILDVEDPLEDAYHLEVSSPGIDRPLTRLKDFETFEGYEARLETNQPIDGRKRFKGVLAGV 127 Query: 121 D----GEMITVTVEGKDEV----FALSNIQKANLV 147 + G+ + + +E E + A LV Sbjct: 128 EKGEGGDEVLLNIEEGGETQTIGLNFDWLSDAKLV 162 >UniRef50_Q3IYN8 Ribosome maturation factor rimP n=10 Tax=Rhodobacterales RepID=RIMP_RHOS4 Length = 204 Score = 154 bits (391), Expect = 6e-37, Method: Composition-based stats. Identities = 54/152 (35%), Positives = 89/152 (58%), Gaps = 6/152 (3%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSA 60 + ++++L +++T +E +GFELV + + G+T TL+I D DG I VD+CA++S VSA Sbjct: 8 TAIDRRLADIVTPVIEGMGFELVRLRLMSGKTRTLQIMADRPDGGIVVDECAEISTAVSA 67 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 LDVEDPI Y LEVSSPG+DRPL + + + G E + + RR+++G + Sbjct: 68 ALDVEDPIEENYTLEVSSPGIDRPLTRLKDFEVWTGYEARIETTELIDGRRRFKGELAGT 127 Query: 121 DGEMITVTVEGKDEV-----FALSNIQKANLV 147 +G+ + +T+E + + A L+ Sbjct: 128 EGDEVLITIEDGRDSYVTIGLKFDWLADAKLI 159 >UniRef50_B0PH19 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PH19_9FIRM Length = 159 Score = 154 bits (391), Expect = 6e-37, Method: Composition-based stats. Identities = 41/144 (28%), Positives = 72/144 (50%), Gaps = 2/144 (1%) Query: 9 TEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDP 67 + + +G L + F + G LR YID E G+ +D+C S +VS +LD DP Sbjct: 16 EALAAPVAQRMGLYLWDVAFEKEGAGWYLRYYIDREGGVTIDECEAFSREVSDLLDEADP 75 Query: 68 ITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITV 127 I +Y LEV SPG++R L H+ +++G +V + L V+ R + G + + + ++ V Sbjct: 76 IDQSYTLEVGSPGVERKLTKDWHFQKYIGAQVHVRLIRPVEGERDFVGALSSYENGVVAV 135 Query: 128 TVEGK-DEVFALSNIQKANLVPHF 150 ++ + + F+ L F Sbjct: 136 LLDDELEMTFSPGETAFVRLYEEF 159 >UniRef50_A5FV18 Ribosome maturation factor rimP n=2 Tax=Acetobacteraceae RepID=RIMP_ACICJ Length = 201 Score = 154 bits (391), Expect = 7e-37, Method: Composition-based stats. Identities = 52/150 (34%), Positives = 88/150 (58%), Gaps = 4/150 (2%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSED--GINVDDCADVSHQVS 59 + LE ++ E+I +E++G+ELV + + +T T++I D D +++DDC +SH VS Sbjct: 36 TGLEGRIAELIAPGLESIGYELVRVAIMGKQTPTVQIMADRADQTPLSLDDCERISHLVS 95 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQ-NRRKWQGVIK 118 AVLDV+DPI+ A+ LEVSS G+DRPL + + R+ G + L + R++ G + Sbjct: 96 AVLDVDDPISSAWTLEVSSAGIDRPLTRVKDWNRYAGHLARIDLDVPTASGRKRLTGTVL 155 Query: 119 AVDGEMITVTVE-GKDEVFALSNIQKANLV 147 D V ++ G+ ++I++A LV Sbjct: 156 GADEAQARVKLDSGETVDLPHAHIRRAKLV 185 >UniRef50_Q6AJY2 Ribosome maturation factor rimP n=1 Tax=Desulfotalea psychrophila RepID=RIMP_DESPS Length = 151 Score = 154 bits (390), Expect = 8e-37, Method: Composition-based stats. Identities = 51/144 (35%), Positives = 86/144 (59%), Gaps = 2/144 (1%) Query: 6 QKLTEMITAPVEALGFELVGIEFI-RGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDV 64 +K+ + + ++++ ELV I+F G LR++ID E G+ +D CA VS +V LDV Sbjct: 7 EKIEGYVASVLQSMDVELVDIQFRCEGHGWVLRLFIDVEGGVTLDLCAQVSREVGQYLDV 66 Query: 65 EDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEM 124 ED I AY+LEVSSPG++RPL + ++ RF G++ + L + + ++G+I V+ Sbjct: 67 EDVIEQAYHLEVSSPGVERPLKSLANFERFAGKKARIKLHEPLNGEKTFEGIIGPVEDGE 126 Query: 125 ITVTVEGK-DEVFALSNIQKANLV 147 +++ V+GK + + KA LV Sbjct: 127 VSLLVDGKIAVKCGIEQLNKARLV 150 >UniRef50_A0LE22 Ribosome maturation factor rimP n=1 Tax=Magnetococcus sp. MC-1 RepID=RIMP_MAGSM Length = 185 Score = 154 bits (389), Expect = 1e-36, Method: Composition-based stats. Identities = 47/162 (29%), Positives = 79/162 (48%), Gaps = 12/162 (7%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDS-------EDGINVDDCA 52 MS + QK+ + + E+V + + R G +R+ D E I++D+C Sbjct: 24 MSDIAQKVEALAIQAAKTEDCEVVEVIYRREGGVYVVRVAADKLPDDQGQERHISLDECG 83 Query: 53 DVSHQVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQN--- 109 +S Q+S++LDV D I AY+LEVSSPG++RPL + RF G+ V + + Sbjct: 84 SISRQISSLLDVHDVIPNAYHLEVSSPGIERPLIKDGDFTRFAGKLVEIRTYQPMDTESG 143 Query: 110 -RRKWQGVIKAVDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 R+K++G + + M+ V + + KA+L F Sbjct: 144 PRKKFRGTLLGLQEAMVVVAEANGEVRIPWEQVAKAHLTFDF 185 >UniRef50_D1Y7J0 Putative uncharacterized protein n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y7J0_9BACT Length = 165 Score = 153 bits (388), Expect = 1e-36, Method: Composition-based stats. Identities = 57/145 (39%), Positives = 85/145 (58%), Gaps = 2/145 (1%) Query: 6 QKLTEMITAPVEALGFELVGIEFIRGRTS-TLRIYIDSEDGINVDDCADVSHQVSAVLD- 63 +K++ + VE+LG+E VG E ++ S LR+YID + G+ +DDC + ++ A+LD Sbjct: 4 EKISGQLKTLVESLGYEFVGAETVKEAGSQILRVYIDRDGGVGLDDCERSAKEIGALLDT 63 Query: 64 VEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGE 123 D Y LEVSSPGL+RPLF AE YARF G V + L+ + RR+ VI+ V Sbjct: 64 AADAFEDHYLLEVSSPGLERPLFKAEDYARFAGRPVNVRLKGVYEGRRRVTAVIEGVKDG 123 Query: 124 MITVTVEGKDEVFALSNIQKANLVP 148 + + G+ L+ IQ+A+LV Sbjct: 124 SVLLDCGGEPLDLPLAEIQRAHLVY 148 >UniRef50_Q14K22 Ribosome maturation factor rimP n=15 Tax=Francisella RepID=RIMP_FRAT1 Length = 152 Score = 153 bits (388), Expect = 1e-36, Method: Composition-based stats. Identities = 58/151 (38%), Positives = 88/151 (58%), Gaps = 1/151 (0%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSA 60 M L L E++ LG+ L GIE + T+RI+ID E+G++VDDC VS ++SA Sbjct: 1 MKMLLDDLYEIVEPITADLGYILWGIEVVGSGKLTIRIFIDHENGVSVDDCQIVSKEISA 60 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 V DVEDP++ Y LEVSSPG++R +F VG V V V ++ K++GV++ V Sbjct: 61 VFDVEDPVSGKYILEVSSPGMNRQIFNIIQAQALVGFNVKAVTLAPVGSQTKFKGVLERV 120 Query: 121 DGEMITVTVE-GKDEVFALSNIQKANLVPHF 150 +G + + +E GK+ F ++K + P F Sbjct: 121 EGNNVILNLEDGKEISFDFDELKKLRVSPDF 151 >UniRef50_A7HZ90 Ribosome maturation factor rimP n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=RIMP_PARL1 Length = 207 Score = 153 bits (388), Expect = 2e-36, Method: Composition-based stats. Identities = 50/151 (33%), Positives = 87/151 (57%), Gaps = 7/151 (4%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVL 62 + +++ E + AP E GFE+V + F TL+I + DG + V+DCA++S +SA+L Sbjct: 30 VARRVFEQLRAPAEGAGFEIVRVRFGVQDGQTLQIMAERPDGSMTVEDCAELSRMLSALL 89 Query: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 DVEDPI Y+LE+SS G+DRPL + + R+ G EV + L + R++++G+++ V+ Sbjct: 90 DVEDPIPGEYHLEISSAGIDRPLTRPKDFERWSGFEVKVGLSEPLSGRKRFRGILQGVED 149 Query: 123 EMITVTVEGKDEV------FALSNIQKANLV 147 + + V + + + +A LV Sbjct: 150 DEVLVECDIEGFSEPQVLGLPFRQLSEAKLV 180 >UniRef50_Q0C5Z8 Ribosome maturation factor rimP n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=RIMP_HYPNA Length = 199 Score = 153 bits (387), Expect = 2e-36, Method: Composition-based stats. Identities = 48/150 (32%), Positives = 84/150 (56%), Gaps = 3/150 (2%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG--INVDDCADVSHQV 58 ++ E++L ++ E LG E+V + GR L+I + G ++DCA +S + Sbjct: 4 LTEQERRLLSLVQPVAEGLGMEIVRLRVQGGRRPHLQIMAERAGGAPTGIEDCARLSRGM 63 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 S VL+ DPI+ AY LEVS+PG+DRPL +AR++G V + L + RR++ G I Sbjct: 64 SPVLEAADPISEAYTLEVSTPGIDRPLTRPGDFARWIGHAVRIELARPIDGRRRFTGTIT 123 Query: 119 AVDGEMITVTVEGKDEVF-ALSNIQKANLV 147 D + + ++ + ++ A+ + +A+LV Sbjct: 124 GEDNDGAHIELDDETKLVAAVHEMSRASLV 153 >UniRef50_A9G896 Ribosome maturation factor rimP n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=RIMP_SORC5 Length = 208 Score = 153 bits (387), Expect = 2e-36, Method: Composition-based stats. Identities = 58/151 (38%), Positives = 84/151 (55%), Gaps = 8/151 (5%) Query: 7 KLTEMITAPVEALGFELVGIEFIRGR-TSTLRIYIDSE------DGINVDDCADVSHQVS 59 ++ + + + + G LV +E+I R TLR+ I+ E G+ ++DCADVS VS Sbjct: 13 RVRDAVAPVLASHGVTLVDLEWITERAGWTLRLTIERENADDAGGGVTLEDCADVSRDVS 72 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVL-RMAVQNRRKWQGVIK 118 +VLDVED I YNLEVSSPGLDR L TA +ARF+G + L R A +R +G + Sbjct: 73 SVLDVEDLIPNHYNLEVSSPGLDRRLRTAAEFARFLGRTAKVKLARPAPDGQRLLRGELL 132 Query: 119 AVDGEMITVTVEGKDEVFALSNIQKANLVPH 149 + V V+GK +++ +A LV Sbjct: 133 EAPEGQVAVLVDGKRIAVPFADVAEARLVFE 163 >UniRef50_B1CB57 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CB57_9FIRM Length = 172 Score = 152 bits (386), Expect = 2e-36, Method: Composition-based stats. Identities = 42/150 (28%), Positives = 84/150 (56%), Gaps = 2/150 (1%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDG-INVDDCADVSHQVSA 60 + ++ + ++ G EL+ IEF + G LR+YI+ +G +++D+ + V+ +S Sbjct: 21 KVIDRVEALSEDILKDNGCELIDIEFKKEGNNKVLRLYIERIEGKVSLDEISTVNRLLSD 80 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 +LD ED I Y LEVSSPG++R + + + +F G +V + L + ++++ G+++ Sbjct: 81 LLDEEDFIEEEYILEVSSPGVNRVIKKEKDFIKFKGSKVDVKLYKPLNGKKQFTGILEGY 140 Query: 121 DGEMITVTVEGKDEVFALSNIQKANLVPHF 150 + E + + ++G+ V +I K NL F Sbjct: 141 ENENVLIDLDGEHLVIPHKDISKVNLSFDF 170 >UniRef50_D1VSB6 Putative uncharacterized protein n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSB6_9FIRM Length = 153 Score = 152 bits (385), Expect = 3e-36, Method: Composition-based stats. Identities = 45/150 (30%), Positives = 82/150 (54%), Gaps = 1/150 (0%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRG-RTSTLRIYIDSEDGINVDDCADVSHQVSA 60 + + ++ ++ E LG+E+V IE+ +G + L I+I ++GI++DDC +SH + Sbjct: 4 KSFKNQIFKIAQVSAEELGYEIVDIEYQKGNKHDLLSIFIFKKEGIDLDDCTMMSHNIEK 63 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 LD + ++ Y LE+SSPGLDRP+ T + Y R + EV + L ++++ G++K Sbjct: 64 NLDNLEILSRPYYLEISSPGLDRPIKTKDDYRRNLENEVEVKLYGPYNGKKEYVGILKDY 123 Query: 121 DGEMITVTVEGKDEVFALSNIQKANLVPHF 150 + + + VE + + NI V F Sbjct: 124 NEHNVIICVENDNIEIPIKNISSMKQVIRF 153 >UniRef50_Q1IIT1 Ribosome maturation factor rimP n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=RIMP_ACIBL Length = 169 Score = 152 bits (384), Expect = 4e-36, Method: Composition-based stats. Identities = 54/164 (32%), Positives = 84/164 (51%), Gaps = 20/164 (12%) Query: 6 QKLTEMITAPVEALGFELVGIEFIRGRT-STLRIYIDSEDGINVDDCADVSHQVSAVLDV 64 +K+ E++ G E+V +EF G LRI ID +G+ DDC+ VS++VS +LDV Sbjct: 5 EKVREIVERVARDYGLEVVEVEFRGGGKARMLRITIDKPEGVTHDDCSHVSNEVSTILDV 64 Query: 65 EDPITVA-YNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGE 123 ED + A Y LEVSSPGLDR + + RF G V + R + R ++G +++ Sbjct: 65 EDVVPGASYTLEVSSPGLDRKISKPADFERFTGSLVKVSTREPLDGNRHFEGRLESFADG 124 Query: 124 MITVTVEG------------------KDEVFALSNIQKANLVPH 149 +T+ + + AL++++KANLVP Sbjct: 125 KLTIDLNAVPQRGQKKQKGPKAPVVERKVEIALADVEKANLVPE 168 >UniRef50_UPI0001C373AC hypothetical protein RflaF_02144 n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C373AC Length = 157 Score = 151 bits (382), Expect = 6e-36, Method: Composition-based stats. Identities = 47/148 (31%), Positives = 80/148 (54%), Gaps = 2/148 (1%) Query: 5 EQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLD 63 EQK+ ++I + LG+ L + +++ G LRI+ID ++GI++DDC + +S +LD Sbjct: 10 EQKVYDLIKPITDELGYYLWDVCYVKEGAMWYLRIFIDQDEGISIDDCERATAPISDILD 69 Query: 64 VEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGE 123 DP+ Y LEV S GL+R L EH+ G+ VTL AV ++ + + D + Sbjct: 70 EADPVPQQYMLEVGSAGLERELVKEEHFEVCKGDTVTLKFFRAVDGEKEIRAELVGADKD 129 Query: 124 MIT-VTVEGKDEVFALSNIQKANLVPHF 150 IT + +G ++ L+++ L F Sbjct: 130 GITVIKEDGTEKTIPLADVSVVKLWLDF 157 >UniRef50_B8FCY3 Ribosome maturation factor rimP n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=RIMP_DESAA Length = 152 Score = 151 bits (382), Expect = 7e-36, Method: Composition-based stats. Identities = 54/145 (37%), Positives = 78/145 (53%), Gaps = 1/145 (0%) Query: 6 QKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDV 64 +++ ++ A +EA G +LV EF R G LR+Y+D E GI + DC VS V +LD Sbjct: 2 EQVRKLTGAALEAEGMDLVLAEFKREGGGYILRLYVDKEGGITLGDCTMVSRYVGDLLDA 61 Query: 65 EDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEM 124 Y LEVSSPGLDRPL +H+ RF G +V + + R+K++GV+ + Sbjct: 62 YADEMPRYRLEVSSPGLDRPLTREDHFRRFEGRTALIVTKEPREGRKKFRGVLSGALNGV 121 Query: 125 ITVTVEGKDEVFALSNIQKANLVPH 149 IT+ + FAL I+ A L Sbjct: 122 ITLVADEVPMEFALHEIESARLQYK 146 >UniRef50_A8ZZ67 Ribosome maturation factor rimP n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=RIMP_DESOH Length = 161 Score = 151 bits (382), Expect = 7e-36, Method: Composition-based stats. Identities = 48/145 (33%), Positives = 77/145 (53%), Gaps = 4/145 (2%) Query: 7 KLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDS---EDGINVDDCADVSHQVSAVL 62 ++ +++ A G ELV +EF + + LR+Y+ S + G+ ++DCA +S QV+ +L Sbjct: 10 QMWKLVEPVCSAEGMELVFVEFNKESQGRVLRLYLASGVPDRGVTLEDCAGISRQVNGLL 69 Query: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 DV P Y LEVSS GL+RPL + RF G V + V +R+ + G++ V Sbjct: 70 DVYLPELDNYTLEVSSAGLERPLAKEIDFERFAGSRVKIRTAAPVSDRKNFTGILLGVSD 129 Query: 123 EMITVTVEGKDEVFALSNIQKANLV 147 + + V+ K V I +A LV Sbjct: 130 GNVRLMVDDKTFVIPYGEITRAKLV 154 >UniRef50_B1LX00 Ribosome maturation factor rimP n=6 Tax=Methylobacterium RepID=RIMP_METRJ Length = 257 Score = 151 bits (382), Expect = 8e-36, Method: Composition-based stats. Identities = 52/155 (33%), Positives = 84/155 (54%), Gaps = 9/155 (5%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGI-NVDDCADVSHQVSA 60 + + ++ + I P+ LGF LV + T++I + DG +DDC VS +S Sbjct: 18 AGVAARVAQAIEGPLAGLGFRLVRVRMSNVNGCTVQIMAERPDGTFTIDDCEAVSRAISP 77 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 +LDV+DP+ AYNLEVSSPG+DRPL +AR+ G E + L + R++++G++ A Sbjct: 78 ILDVDDPVGGAYNLEVSSPGIDRPLVRVSDFARWAGYEAKVELSPPLDGRKRFRGILGAP 137 Query: 121 DGEMITVTVEGKDEV--------FALSNIQKANLV 147 D TV ++ D L ++ +A+LV Sbjct: 138 DPTGTTVPIDLPDVKEGLPSRIDLPLKDLAEAHLV 172 >UniRef50_Q2RMS3 Ribosome maturation factor rimP n=2 Tax=cellular organisms RepID=RIMP_RHORT Length = 225 Score = 150 bits (380), Expect = 1e-35, Method: Composition-based stats. Identities = 48/151 (31%), Positives = 83/151 (54%), Gaps = 12/151 (7%) Query: 8 LTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGI--NVDDCADVSHQVSAVLDVE 65 L +++ ++A+G+E+V + + + TL++ + DG+ V DC +S + A+LDVE Sbjct: 42 LEKLLAPTLDAMGYEVVRVTLLGSQNPTLQVMAERLDGVAMTVSDCETISRALGALLDVE 101 Query: 66 DPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGE-M 124 DPI Y+LE+SSPG+DRPL + YARF G E + ++ R+ +G++ +D + Sbjct: 102 DPIAGRYSLEISSPGIDRPLTRPKDYARFAGHEARIETDRLIEGHRRMKGLLLGIDEDRT 161 Query: 125 ITVT-VEGK--------DEVFALSNIQKANL 146 + + +EGK + I KA L Sbjct: 162 VRLRLIEGKAAEDGTLPEVEIPFGAIVKAKL 192 >UniRef50_A8S8G3 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8S8G3_9FIRM Length = 161 Score = 150 bits (380), Expect = 1e-35, Method: Composition-based stats. Identities = 45/136 (33%), Positives = 69/136 (50%), Gaps = 2/136 (1%) Query: 6 QKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDV 64 Q++ ++ VE +G L + F + G LRI ID + ++ D CA+VSH + +LD Sbjct: 11 QRVEALVRPTVEGMGLRLWDVVFEKEGPDWYLRILIDRDGTMDTDTCAEVSHALDPILDE 70 Query: 65 EDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMA-VQNRRKWQGVIKAVDGE 123 DPI +Y LEV SPGL R L EHY G++V L R+ G++ +G Sbjct: 71 ADPIDQSYYLEVGSPGLGRKLTRPEHYEALKGQKVRAKLIRPNADGVRELSGILTGREGS 130 Query: 124 MITVTVEGKDEVFALS 139 +T+ E F ++ Sbjct: 131 TVTLETENGPVTFEVN 146 >UniRef50_Q7NFN6 Ribosome maturation factor rimP n=1 Tax=Gloeobacter violaceus RepID=RIMP_GLOVI Length = 156 Score = 150 bits (379), Expect = 2e-35, Method: Composition-based stats. Identities = 46/148 (31%), Positives = 78/148 (52%), Gaps = 3/148 (2%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEF-IRGRTSTLRIYIDSE-DGINVDDCADVSHQVSA 60 + +++T + E LG +LV + + + +TLR+ I +G +DDC +S + A Sbjct: 5 DIVEQVTALAEPVAEQLGLQLVAVAYQTHTKPATLRVDIRHPTEGTGLDDCEKMSRALEA 64 Query: 61 VLD-VEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 +LD +D I AYNLEVSSPG++R L T + F G V + V +++W+G + Sbjct: 65 LLDTRDDLIIGAYNLEVSSPGVERVLTTDREFMAFRGFPVMVKTFGPVDGKKQWEGRLLE 124 Query: 120 VDGEMITVTVEGKDEVFALSNIQKANLV 147 DGE + +T+ G+ + + LV Sbjct: 125 RDGENVYLTIAGRRVALPRPQVARVQLV 152 >UniRef50_A5VCZ9 Ribosome maturation factor rimP n=8 Tax=Sphingomonadales RepID=RIMP_SPHWW Length = 186 Score = 150 bits (379), Expect = 2e-35, Method: Composition-based stats. Identities = 50/151 (33%), Positives = 83/151 (54%), Gaps = 5/151 (3%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGR-TSTLRIYIDSEDG--INVDDCADVSHQ 57 M+ + LT++I +ALG +LV + F G+ TL++ + D +++ DC +S + Sbjct: 1 MADIA-ALTKLIEPEAKALGLDLVRVAFFGGKSDPTLQVMAERPDTRQLDIADCEALSRR 59 Query: 58 VSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI 117 +S D DPI AY LEVSSPG+DRPL + +A + G + + L + R+++ G I Sbjct: 60 ISDKFDELDPIEDAYRLEVSSPGIDRPLTRVKDWADWSGFDARVKLAAPLDGRKQFDGRI 119 Query: 118 KAVDGEMITVTVEG-KDEVFALSNIQKANLV 147 A DG+ +T+ V + L+ I A L+ Sbjct: 120 VASDGDSVTLGVNKLGEVTVPLAQIASAKLI 150 >UniRef50_Q97I55 Ribosome maturation factor rimP n=1 Tax=Clostridium acetobutylicum RepID=RIMP_CLOAB Length = 149 Score = 149 bits (378), Expect = 2e-35, Method: Composition-based stats. Identities = 53/132 (40%), Positives = 80/132 (60%), Gaps = 1/132 (0%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIRG-RTSTLRIYIDSEDGINVDDCADVSHQVSAVL 62 + KL E+I VE+LG+E IE ++ LR+YID E+GI++DDC VS +S +L Sbjct: 1 MIDKLIEIIRPVVESLGYEFYHIEIVKEDGERYLRVYIDKENGISLDDCEKVSRAISDLL 60 Query: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 D +DPI +Y LEVSSPG+ R LFT EH +++G V + L+ +++ + G + V+ Sbjct: 61 DEKDPIPYSYYLEVSSPGIYRTLFTEEHLKKYIGNTVDIKLKSSLEKSTNYSGKLIDVNE 120 Query: 123 EMITVTVEGKDE 134 E I + V E Sbjct: 121 EDIVIVVSDNRE 132 >UniRef50_D2LJ62 Putative uncharacterized protein n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LJ62_RHOVA Length = 221 Score = 149 bits (378), Expect = 2e-35, Method: Composition-based stats. Identities = 47/147 (31%), Positives = 79/147 (53%), Gaps = 7/147 (4%) Query: 8 LTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVED 66 L +I +E +GF LV + + +T++I D DG INVDDCA +S ++S +LD D Sbjct: 32 LAALIEPVLEDMGFRLVRVTMSKRDGATIQIMADKADGAINVDDCAQISRRISPLLDAHD 91 Query: 67 PITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEM-- 124 PI Y LEVSSPG+DR L + + G E + L+ + R++++G+++ + Sbjct: 92 PIKDRYYLEVSSPGIDRILVRPSDFEDWAGFETKVELKELIDGRKRFRGILEGYENGEML 151 Query: 125 --ITVTVEGKDEVF--ALSNIQKANLV 147 + + +G+ + + I A LV Sbjct: 152 LQVQLDEKGEPQTIGLPVDLIHDAKLV 178 >UniRef50_Q0SSD0 Ribosome maturation factor rimP n=16 Tax=Clostridium RepID=RIMP_CLOPS Length = 154 Score = 149 bits (378), Expect = 2e-35, Method: Composition-based stats. Identities = 54/145 (37%), Positives = 85/145 (58%), Gaps = 2/145 (1%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIRGRT-STLRIYIDS-EDGINVDDCADVSHQVSAV 61 L L + V+ G++L IE+++ LR+YI+ E+ I++ DC VS +S + Sbjct: 6 LVADLEALCAPIVKEKGYDLYHIEYVKENNEYYLRLYIEKPEERISLRDCEIVSRALSDM 65 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 LD+EDPI AY LEVSSPGL+R L + EH+ RF+G+E+ + + ++ R+ +G++K V Sbjct: 66 LDIEDPIKDAYFLEVSSPGLNRRLHSDEHFNRFIGKEIFVGFKSSLSGRKNVKGILKDVQ 125 Query: 122 GEMITVTVEGKDEVFALSNIQKANL 146 I V EG + I+ ANL Sbjct: 126 ENEIIVECEGNEIKVPKDKIKTANL 150 >UniRef50_Q8RHJ4 Ribosome maturation factor rimP n=9 Tax=Fusobacterium RepID=RIMP_FUSNN Length = 156 Score = 149 bits (378), Expect = 2e-35, Method: Composition-based stats. Identities = 49/149 (32%), Positives = 96/149 (64%), Gaps = 4/149 (2%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDG-INVDDCADVSHQVSAV 61 + +K+T ++ +E + LV +E+++ G +RI+I++ +G +N++DC+ +S ++ Sbjct: 7 IVEKITRIVNPFIEEMNLSLVDVEYVQDGGYWYVRIFIENLNGDLNIEDCSKLSSKIEDK 66 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 VE+ I + LEVSSPGL+RPL E Y RF+GE++TL L+ + ++++++ +IK V+ Sbjct: 67 --VEELIEHKFFLEVSSPGLERPLKKLEDYTRFIGEKITLHLKHKLDDKKQFKTIIKEVN 124 Query: 122 GEMITVTVEGKDEVFALSNIQKANLVPHF 150 G+ I ++ K+ + I+KAN++ F Sbjct: 125 GDNIIFLMDKKEVEIKFNEIRKANILFEF 153 >UniRef50_B6FZB3 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FZB3_9CLOT Length = 154 Score = 149 bits (377), Expect = 2e-35, Method: Composition-based stats. Identities = 45/151 (29%), Positives = 84/151 (55%), Gaps = 2/151 (1%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTS-TLRIYIDSEDGINVDDCADVSHQVSA 60 S + ++ +M+TA + G+E V +E+++ LR+ +D E GI++++C +VS ++S Sbjct: 4 SEIVDRVEKMVTAITDEKGYETVDVEYVKEAGQFYLRVVVDKEGGISLNECEEVSRELSP 63 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 LD D I Y LEVSSPG+DR L + + ++ G +V + L A+ ++++G + + Sbjct: 64 KLDENDFIEENYYLEVSSPGIDRALKRDKEFVKYKGRDVEIKLYKAIDGVKQFEGELVGL 123 Query: 121 DGE-MITVTVEGKDEVFALSNIQKANLVPHF 150 D E I V + ++ F ++ L F Sbjct: 124 DEENNIVVIINNEEMKFNRKDVAIIRLAIKF 154 >UniRef50_D2Q1L3 Putative uncharacterized protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2Q1L3_9ACTO Length = 178 Score = 149 bits (376), Expect = 3e-35, Method: Composition-based stats. Identities = 51/145 (35%), Positives = 72/145 (49%), Gaps = 6/145 (4%) Query: 8 LTEMITAPVEALGFELVGIEFI-RGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVED 66 L + VE G +L E GR LR+ +D + GI++DD ADV+ +S LD +D Sbjct: 13 LENFLRPLVEQFGCDLEAAEVTPAGRRRLLRVLVDRDGGISLDDVADVTRAISKALDADD 72 Query: 67 PI-TVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMI 125 + AY LEVSSPG+DRPL H+ R + V + L K G IK V E Sbjct: 73 VMGDGAYTLEVSSPGVDRPLTLPRHWRRNISRLVAVTLHS----GDKLTGRIKTVSDETA 128 Query: 126 TVTVEGKDEVFALSNIQKANLVPHF 150 + V+G A +++ KA + F Sbjct: 129 DLDVDGTLRTVAYADVDKAKVQIEF 153 >UniRef50_A8IG16 Ribosome maturation factor rimP n=3 Tax=Rhizobiales RepID=RIMP_AZOC5 Length = 291 Score = 149 bits (376), Expect = 4e-35, Method: Composition-based stats. Identities = 49/153 (32%), Positives = 81/153 (52%), Gaps = 7/153 (4%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSA 60 S + ++ ++T + L LV ++ T +I + DG + +DDC S +S Sbjct: 19 SGVAARIAAIVTPVLADLNLRLVRVKVTARDGGTCQIMAERPDGSMTIDDCEAASRAISP 78 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 VLDVEDPIT AY LE+SSPG+DRPL + R+ G EV + + + V R++++G++ Sbjct: 79 VLDVEDPITGAYRLEISSPGIDRPLVRLTDFDRWAGHEVKVEMAVPVDGRKRFRGILIGT 138 Query: 121 DGEMITVTV------EGKDEVFALSNIQKANLV 147 E+ V E + +++I +A LV Sbjct: 139 RAELAVVKRTDAPKGEEPEVSLPVADIGEAKLV 171 >UniRef50_B5YJX5 Ribosome maturation factor rimP n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=RIMP_THEYD Length = 164 Score = 148 bits (375), Expect = 4e-35, Method: Composition-based stats. Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 13/159 (8%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIE-FIRGRTSTLRIYIDSEDGINVDDCADVSHQVS 59 + L+ K+T+ E G E+V +E + G+ TLRI+ID E G+ + DC + S + Sbjct: 3 IKELKDKITDYANIVGEQEGVEIVNVEIYPGGKGLTLRIFIDKEGGVTIKDCENFSRAIE 62 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 A+LDVEDPI +Y LEVSSPG+DRPL + + R +G +V + + + + + G I Sbjct: 63 AILDVEDPIKSSYTLEVSSPGIDRPLKNKKDFLRNIGRDVKITTKEKIADNTFFIGKIVD 122 Query: 120 VDGEMITVTVEGKDEV------------FALSNIQKANL 146 V + + + ++ + I KA + Sbjct: 123 VGDDWVRIEIQETKIKGSKKKGKTELLFIPFNKIIKAQV 161 >UniRef50_Q11BD1 Ribosome maturation factor rimP n=6 Tax=Rhizobiales RepID=RIMP_MESSB Length = 220 Score = 148 bits (375), Expect = 5e-35, Method: Composition-based stats. Identities = 51/148 (34%), Positives = 76/148 (51%), Gaps = 7/148 (4%) Query: 7 KLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVE 65 ++ ++ ++ALG+ LV + TL+I + DG + VDDC +VS VS LDVE Sbjct: 15 RVAAIVMPVLDALGYRLVRVRLSAQDGLTLQIMAERPDGTMTVDDCEEVSRAVSPALDVE 74 Query: 66 DPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMI 125 DPI AY LE+SSPG+DRPL + +G + + V R++++G I GE + Sbjct: 75 DPIDSAYQLEISSPGIDRPLVRLSDFQAALGHLAKVETSVMVDGRKRFRGQIVGCTGETL 134 Query: 126 TVTVEGKDE------VFALSNIQKANLV 147 T+ + E L I A LV Sbjct: 135 TIERDKVAEGEAPLAEIPLDAISDAKLV 162 >UniRef50_B9DPF1 Ribosome maturation factor rimP n=13 Tax=Bacillales RepID=RIMP_STACT Length = 155 Score = 148 bits (374), Expect = 5e-35, Method: Composition-based stats. Identities = 50/150 (33%), Positives = 85/150 (56%), Gaps = 5/150 (3%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVS 59 MS + +++ E+I ++ L FELV IEF + G+ LRI ID E G++++DC S ++S Sbjct: 1 MSKITEQIEEIIQPVLDDLNFELVEIEFTKEGKDHFLRISIDKEGGVDLNDCTLASEKIS 60 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 V++ EDPI Y L+V+SPG +RP+ T + V + V + L + ++W GV+++ Sbjct: 61 EVMNEEDPIEQMYYLDVASPGAERPIKTDKALHDAVEQPVFVSLYAPIDGSKEWLGVLQS 120 Query: 120 VDGEMITV----TVEGKDEVFALSNIQKAN 145 V + I + + K+ + I KA Sbjct: 121 VTDDHIVIKAQVKEKKKEVEIPRNKIAKAR 150 >UniRef50_B2I724 Ribosome maturation factor rimP n=20 Tax=Xanthomonadaceae RepID=RIMP_XYLF2 Length = 199 Score = 148 bits (374), Expect = 6e-35, Method: Composition-based stats. Identities = 62/159 (38%), Positives = 91/159 (57%), Gaps = 9/159 (5%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFI-RGRTSTLRIYID------SEDGINVDDCAD 53 MS ++ ++ VE LGF+L+G E++ + LR+YID E +++DDC Sbjct: 1 MSDKGIEIVNLLAPKVEMLGFDLLGAEYLLVPSGAILRLYIDIPFAMQPECMVSIDDCER 60 Query: 54 VSHQVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKW 113 VS +VSA LD+E+PI+ Y LEVSSPGLDR LFT E +AR V + L++ R+ Sbjct: 61 VSREVSAYLDLEEPISGNYTLEVSSPGLDRRLFTLEQFARHHNHLVKVGLKLQQHGSRRL 120 Query: 114 QGVIKAVD--GEMITVTVEGKDEVFALSNIQKANLVPHF 150 QG I V+ G + + V G + +NI KA +VP + Sbjct: 121 QGKIVRVEQVGGFVVLLVNGVELAVDFNNIDKARIVPDW 159 >UniRef50_C9LLP6 Putative uncharacterized protein n=1 Tax=Dialister invisus DSM 15470 RepID=C9LLP6_9FIRM Length = 156 Score = 147 bits (372), Expect = 1e-34, Method: Composition-based stats. Identities = 46/153 (30%), Positives = 80/153 (52%), Gaps = 4/153 (2%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAV 61 +E + ++ ++ LG EL+ +E++R R LR++ID EDG++++DC +S + + Sbjct: 4 KEIELEAERLLEPALKQLGIELIDVEYVRERNWILRVFIDKEDGVDLNDCQQISEKAGEL 63 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQ---NRRKWQGVIK 118 LD D I+ Y LEVSSPGLDR L + + R+ GEEV + L ++ + + V+ Sbjct: 64 LDEADLISANYMLEVSSPGLDRVLKKDKDFLRYAGEEVDVKLFAPLEEVGGVKAFTAVLD 123 Query: 119 AV-DGEMITVTVEGKDEVFALSNIQKANLVPHF 150 + D I + + K I + + F Sbjct: 124 GLSDDGQIRLIFQDKTITLGKDKISQIRIHFSF 156 >UniRef50_B2IIK0 Ribosome maturation factor rimP n=19 Tax=Alphaproteobacteria RepID=RIMP_BEII9 Length = 314 Score = 147 bits (371), Expect = 1e-34, Method: Composition-based stats. Identities = 47/161 (29%), Positives = 85/161 (52%), Gaps = 15/161 (9%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSA 60 S + ++ + + LG LV ++ +T++I + DG ++V+ C VS +S Sbjct: 34 SGIAARVAVLAAPVLADLGLRLVRVKISGQNGTTVQIMAERPDGTMDVEACESVSEALSP 93 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 VLDVEDP+ AY+LE+SSPG+DRPL + R +G+EV + L+ + R++++G I + Sbjct: 94 VLDVEDPVKQAYHLEISSPGIDRPLVRLSDFERALGQEVRVELKTGLAGRKRFRGTIGPI 153 Query: 121 DGEM--------ITVT------VEGKDEVFALSNIQKANLV 147 + + +T E + + L ++ +A LV Sbjct: 154 EASSPIGGSKGALRLTRTDAKPEEETEVLLPLDDLHEARLV 194 >UniRef50_A7VT55 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VT55_9CLOT Length = 167 Score = 146 bits (370), Expect = 2e-34, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 75/137 (54%), Gaps = 3/137 (2%) Query: 6 QKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDV 64 + + ++ V+ G EL + +++ G LR+YID ++G+ ++DC +VS + LD Sbjct: 12 EAVWDLCEPIVKDFGLELWDVRYLKEGAQWYLRVYIDRQEGVTIEDCENVSRAIDEPLDR 71 Query: 65 EDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQ-NRRKWQGVIKAVDGE 123 DP+ +Y LEV SPGL+R L EH+ RF G V + L + R++ GV+ + Sbjct: 72 LDPVDQSYCLEVCSPGLERELVRPEHFQRFEGWPVMVKLIRPLDSGEREFNGVLGTYENG 131 Query: 124 MITVTVEGKDEVFALSN 140 + + V + +V +L+ Sbjct: 132 VFDLWV-NETDVISLAK 147 >UniRef50_B2KC93 Ribosome maturation factor rimP n=1 Tax=Elusimicrobium minutum Pei191 RepID=RIMP_ELUMP Length = 152 Score = 146 bits (369), Expect = 2e-34, Method: Composition-based stats. Identities = 41/144 (28%), Positives = 77/144 (53%), Gaps = 1/144 (0%) Query: 6 QKLTEMITAPVEALGFELVGIEFI-RGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDV 64 + + ++ + G+E+V + +G + ++D E GIN+DD S + +++++ Sbjct: 5 KAIESVVADGLANQGYEVVDLIVQNQGSKKLFQFFVDKEGGINLDDVEKASRLIDSIIEM 64 Query: 65 EDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEM 124 E+ I AY LE SSPG+ R L EH+ +F+G+ + L+ ++NR + G+I + Sbjct: 65 ENLIEGAYILEASSPGIKRVLKKPEHFKKFIGQRAKITLKQMIENRANFTGLIAGANETE 124 Query: 125 ITVTVEGKDEVFALSNIQKANLVP 148 +T+ F +I+KANL P Sbjct: 125 MTLDDGTTQFKFKYEDIKKANLDP 148 >UniRef50_C6XRW8 Putative uncharacterized protein n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XRW8_HIRBI Length = 203 Score = 145 bits (366), Expect = 5e-34, Method: Composition-based stats. Identities = 50/149 (33%), Positives = 88/149 (59%), Gaps = 2/149 (1%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVS 59 +S +E+++ ++I ++G E+V + + T L+I + DG ++V+DCA +S + Sbjct: 4 LSEIEKRILDIIEPEATSIGLEIVRVRMMGANTPILQIMAEKPDGTMDVEDCAKLSRAIG 63 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 VLDVEDPI YNLEVSSPG+DRPL +A + EV + L + + RR++ G I Sbjct: 64 PVLDVEDPIHSEYNLEVSSPGIDRPLTREGDFANWKTYEVRIELGIPIDGRRRFHGTITD 123 Query: 120 VDGEMITVTV-EGKDEVFALSNIQKANLV 147 ++++ + +G ++ ++ KA+LV Sbjct: 124 EVNGIVSLDLKDGSKAEISIVDMVKASLV 152 >UniRef50_C6NSC0 Transcription termination protein NusA-like protein n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NSC0_9GAMM Length = 176 Score = 144 bits (363), Expect = 1e-33, Method: Composition-based stats. Identities = 62/149 (41%), Positives = 91/149 (61%), Gaps = 2/149 (1%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDG-INVDDCADVSHQVSAV 61 LE++L E I A+G +V + +R GR+ TL+++I+ ++G + ++DCA VS Q+S Sbjct: 28 LEERLLEGIAEQAAAMGCGVVDVRLLRVGRSVTLQVFIEKDEGAVTIEDCAAVSRQLSVW 87 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 LDVE+PI AY LEVSSPGLDRPL + RFVG + LR RR+W+G + Sbjct: 88 LDVENPIAGAYRLEVSSPGLDRPLKREADFQRFVGALAEIELRGLRDGRRRWRGRLLLAS 147 Query: 122 GEMITVTVEGKDEVFALSNIQKANLVPHF 150 + + V+G + F L+ I KA LVP + Sbjct: 148 PGSVALDVDGVRQEFLLAEILKAKLVPEW 176 >UniRef50_B0T164 Ribosome maturation factor rimP n=6 Tax=Alphaproteobacteria RepID=RIMP_CAUSK Length = 199 Score = 144 bits (363), Expect = 1e-33, Method: Composition-based stats. Identities = 50/145 (34%), Positives = 83/145 (57%), Gaps = 5/145 (3%) Query: 8 LTEMITAPVEALGFELVGIEFIRGR-TSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVE 65 L E++ E++G+E+V + + G L+I + DG +NV+DCA +S +S +LD Sbjct: 11 LVELLDPVAESVGYEIVRLRLMGGAEQRRLQIMAERPDGDMNVEDCAKLSRAISEILDAA 70 Query: 66 DPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMI 125 DPI+ Y LEVSSPG+DRPL + + + G EV + L + R++++G + V+ + Sbjct: 71 DPISGEYTLEVSSPGVDRPLTRLKDFETYAGLEVRIELDRVAEGRKRFKGELAGVEDGQV 130 Query: 126 TVTVEGKDEV---FALSNIQKANLV 147 + +EG+D+ F I A LV Sbjct: 131 GLNLEGEDDTTVYFPFEWIVDAKLV 155 >UniRef50_Q6FF42 Ribosome maturation factor rimP n=21 Tax=Moraxellaceae RepID=RIMP_ACIAD Length = 174 Score = 143 bits (362), Expect = 1e-33, Method: Composition-based stats. Identities = 73/171 (42%), Positives = 93/171 (54%), Gaps = 22/171 (12%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFI-RGRTSTLRIYIDSE---------------- 43 +S Q L ++I V+A L GIEFI +G+ S LRI+ID Sbjct: 3 LSNKTQALHDLIAPAVQACDVNLWGIEFIPQGKRSLLRIFIDKPVDETAEPVLNEDGETE 62 Query: 44 --DGINVDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTL 101 GI V DC V+ QV A+LDV DPI+ Y LEVSSPG DRP F E + ++G++V L Sbjct: 63 LGRGIGVQDCVRVTQQVGAILDVHDPISGEYALEVSSPGWDRPFFQLEQMSAYIGQQVAL 122 Query: 102 VLRMAVQNRRKWQGVIKAVD--GEMITVTVEGKDE-VFALSNIQKANLVPH 149 L AV+NRRK+Q + VD EMI V V+GK NI KANL+ Sbjct: 123 RLISAVENRRKFQAKLLLVDLENEMIQVEVDGKHVLEIDSHNIDKANLIYQ 173 >UniRef50_C3WCG0 Putative uncharacterized protein n=6 Tax=Fusobacterium RepID=C3WCG0_FUSMR Length = 160 Score = 142 bits (360), Expect = 3e-33, Method: Composition-based stats. Identities = 45/152 (29%), Positives = 88/152 (57%), Gaps = 5/152 (3%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDG-INVDDCADVSHQVS 59 + +K+ +++T V +G LV IE+++ G +RIY+++ +G I +++CA +S ++ Sbjct: 8 QKIIEKIEKIVTPVVNEMGLSLVDIEYMQDGGYWYVRIYVENLNGEITLEECAAISGKID 67 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 DV+ I + LEVSSPG++RPL E + RF GE++ + L+ + +++ ++G+I Sbjct: 68 E--DVDKLIEQRFFLEVSSPGIERPLKKIEDFIRFKGEKIKVSLKHKINDKKSFEGIITE 125 Query: 120 VDGEMITV-TVEGKDEVFALSNIQKANLVPHF 150 +I + E S ++KAN++ F Sbjct: 126 CKDNIIFLEIEEENIVEIPFSEVKKANIIYEF 157 >UniRef50_C0W7C6 YhbC family protein n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W7C6_9ACTO Length = 154 Score = 142 bits (359), Expect = 4e-33, Method: Composition-based stats. Identities = 53/153 (34%), Positives = 84/153 (54%), Gaps = 9/153 (5%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGI---NVDDCADVSHQ 57 + ++LTE++T VE G L G+E R GR ST+R+ +D DG ++D A+V+ Sbjct: 7 TATTERLTELLTPVVEQAGLFLEGVETTRAGRYSTVRVIVDLPDGPGDLDLDAVAEVTQT 66 Query: 58 VSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI 117 VS LD DP+ Y LEV+SPG +R L T + R G + LV + G + Sbjct: 67 VSDALDEADPVKGQYTLEVTSPGAERELTTPRTFRRATGHQARLVTA-----GQTLTGTV 121 Query: 118 KAVDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 ++ D E +TV V+G ++ A +++ +A +V F Sbjct: 122 RSADEETVTVEVDGSEQTIAYTDLLEARMVVVF 154 >UniRef50_A4X4N4 Ribosome maturation factor rimP n=3 Tax=Actinomycetales RepID=RIMP_SALTO Length = 220 Score = 142 bits (358), Expect = 4e-33, Method: Composition-based stats. Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 7/157 (4%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVS 59 +++ +L E++ V G++L + R GR +++ +D++ GI++D ADVS VS Sbjct: 35 LASRRARLHEVVEPVVGEAGYDLEELSISRAGRRHVVQVIVDADGGIDLDAVADVSRAVS 94 Query: 60 AVLDVE-----DPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLR-MAVQNRRKW 113 A LD D + Y LEVSSPG+ RPL H+ R G V + +R R+ Sbjct: 95 AALDAAEEARGDIVAGEYQLEVSSPGVSRPLTLPRHWRRNAGRLVRVTVRGGPDAGDRQL 154 Query: 114 QGVIKAVDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 G + D E + + + ++ + + + F Sbjct: 155 TGRVVEADDEQVVLETDAGRAGWSYAELGPGRVQVEF 191 >UniRef50_B9K861 Ribosome maturation factor rimP n=6 Tax=Thermotogaceae RepID=RIMP_THENN Length = 150 Score = 141 bits (357), Expect = 6e-33, Method: Composition-based stats. Identities = 47/149 (31%), Positives = 79/149 (53%), Gaps = 6/149 (4%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDG-INVDDCADVSHQVSAV 61 + +K+ + E G E+ I++ R R LR+ ID+ G ++V DC S ++ Sbjct: 6 IVEKVRKEAERIAEKQGLEIFDIQYRRESRGWVLRVVIDNPVGYVSVRDCELFSRELERF 65 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 LD ED I +Y LEVSSPGLDRPL + Y RF G+ ++ + + + + G I++ Sbjct: 66 LDREDLIEHSYTLEVSSPGLDRPLRGPKDYQRFTGKLAKIITK----DGKTFIGRIESFV 121 Query: 122 GEMITVTVEGKDEVFALSNIQKANLVPHF 150 ++T++ E + +++KANL F Sbjct: 122 DGIVTISDEKGKHEIDIEDVRKANLEIEF 150 >UniRef50_C7HSS3 Putative uncharacterized protein n=1 Tax=Anaerococcus vaginalis ATCC 51170 RepID=C7HSS3_9FIRM Length = 152 Score = 141 bits (356), Expect = 8e-33, Method: Composition-based stats. Identities = 52/149 (34%), Positives = 74/149 (49%), Gaps = 5/149 (3%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAV 61 L KL E + + + LG+ELV IEF+ G+ LR +I + GI +DDC S+ +S Sbjct: 8 DLISKLKENLESDINGLGYELVDIEFVNEGKNKILRFFIYKDGGITIDDCEKTSNFLSER 67 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 LD D I Y LEVSSP L RPL T R E + + L+ N K+ G IK + Sbjct: 68 LDEIDLIKSFYYLEVSSPDLSRPLKTDRDLERNKDELLEIKLK----NGEKFIGKIKEIK 123 Query: 122 GEMITVTVEGKDEVFALSNIQKANLVPHF 150 + T+E + + S I+ + F Sbjct: 124 ENSLIFTLENEQKEIEKSEIKTIKIEIVF 152 >UniRef50_B8DN15 Ribosome maturation factor rimP n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=RIMP_DESVM Length = 226 Score = 140 bits (355), Expect = 9e-33, Method: Composition-based stats. Identities = 58/191 (30%), Positives = 85/191 (44%), Gaps = 41/191 (21%) Query: 1 MST--LEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYID----------------- 41 MST L + + T +ALG L GIE I G LR+Y+D Sbjct: 1 MSTYPLRDAVAAIATPLADALGIALWGIEIIDGGRMVLRVYVDAKPGMPVPADTAEATES 60 Query: 42 -----------SEDGINVDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEH 90 + +G+ +D CA +S Q+ LDVED + AY LEVSSPGL+RP F Sbjct: 61 ATPEGVALEGSTPEGVTIDQCARLSRQLGLALDVEDVVRDAYVLEVSSPGLERPFFEIAQ 120 Query: 91 YARFVGEEVTLVLRMA---VQNRRKWQGVIKAVDGEMITV--------TVEGKDEVFALS 139 +VG + L L + RRK++ I V+G+ +T + A Sbjct: 121 VVPYVGRTIELTLAVPHPEWPGRRKFRADIVRVEGDTLTFLPDTAPRPDEDPAPISVAWD 180 Query: 140 NIQKANLVPHF 150 +++KA+L+ F Sbjct: 181 DVKKAHLIHVF 191 >UniRef50_B9L6E1 Ribosome maturation factor rimP n=1 Tax=Nautilia profundicola AmH RepID=RIMP_NAUPA Length = 148 Score = 140 bits (355), Expect = 1e-32, Method: Composition-based stats. Identities = 44/145 (30%), Positives = 75/145 (51%), Gaps = 9/145 (6%) Query: 7 KLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVE 65 +L ++I VE G +L IE G R+YI G++++DCA +++ +S + D+E Sbjct: 5 ELNDIIKNIVEDNGCDLYDIELSEEGGHKYFRVYITKPGGVSLNDCAKINNLISPIFDIE 64 Query: 66 DPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMI 125 DP+ Y LEVSSPGL+R L EH+ + +GE+V + + K +G +K+ + Sbjct: 65 DPVEGKYFLEVSSPGLERKLTKPEHFEKSIGEKVKVTT----NDGTKLKGELKSFIDNVA 120 Query: 126 TVTVEGKDEVFALSNIQKANLVPHF 150 + E +I+KA + Sbjct: 121 EI----GKEKVNFDDIKKAKTYIEW 141 >UniRef50_B1GZN4 Ribosome maturation factor rimP n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=RIMP_UNCTG Length = 151 Score = 140 bits (355), Expect = 1e-32, Method: Composition-based stats. Identities = 38/146 (26%), Positives = 71/146 (48%), Gaps = 2/146 (1%) Query: 6 QKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDV 64 Q++ +++ E+V +++ + RI+ID + G+ + DC ++S A LD Sbjct: 5 QEIEDLLAPVAAREKIEIVDVQYSKKAGDWVARIFIDKDSGVTISDCENISCIFGAFLDE 64 Query: 65 EDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEM 124 D + +Y LE+SSPG R L + + + RF+G + + + N+R + G + D Sbjct: 65 SDILKDSYVLEISSPGFKRVLKSEKSFRRFIGSKTRIRTFKPINNQRNFLGTLLNFDDGR 124 Query: 125 ITV-TVEGKDEVFALSNIQKANLVPH 149 I + V S+I+KAN+ Sbjct: 125 IKINDVTNGVVEIEFSDIRKANIEAD 150 >UniRef50_A8ST27 Putative uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8ST27_9FIRM Length = 129 Score = 140 bits (354), Expect = 1e-32, Method: Composition-based stats. Identities = 42/126 (33%), Positives = 70/126 (55%), Gaps = 2/126 (1%) Query: 25 GIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGLDR 83 +E+++ G LR+Y D E GI ++DC V+ + +LD ED I+ AY LEVSSPGL R Sbjct: 2 DVEYVKEGSDYYLRVYADKEGGITINDCEIVNRALGDLLDQEDYISDAYILEVSSPGLTR 61 Query: 84 PLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTVEGK-DEVFALSNIQ 142 PL + R +G+ V + + + ++++GV+KA D +T+ E + + + +I Sbjct: 62 PLKKENDFKRSIGKVVEIKTFVKINGAKEFEGVLKAYDDATVTIEFEDETEVTISRKDIS 121 Query: 143 KANLVP 148 L Sbjct: 122 MIRLAF 127 >UniRef50_Q47D92 Ribosome maturation factor rimP n=2 Tax=Betaproteobacteria RepID=RIMP_DECAR Length = 146 Score = 140 bits (354), Expect = 1e-32, Method: Composition-based stats. Identities = 54/146 (36%), Positives = 84/146 (57%), Gaps = 6/146 (4%) Query: 8 LTEMITAPVEALGFELVGIEFIRGRTSTLRIYID---SEDGINVDDCADVSHQVSAVLDV 64 L ++ V LG+ELV +E R T+R++ID E GI+V+DCA VS+Q++ V +V Sbjct: 3 LNTLLETTVVGLGYELVDVEMSP-RGRTIRVFIDAPAKETGIDVEDCAKVSNQLTRVFEV 61 Query: 65 EDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEM 124 E+ LE+SSPGLDR + A + RF G+E+ + +R+ RR +QG + + Sbjct: 62 ENFDFD--RLEISSPGLDRVVKKAADFERFSGQEIQIKVRIPQGGRRNFQGELLGLKDGK 119 Query: 125 ITVTVEGKDEVFALSNIQKANLVPHF 150 + + + D +NI+KA LVP F Sbjct: 120 VGLRLAKDDVELEFTNIEKARLVPRF 145 >UniRef50_D1PLN8 Putative uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLN8_9FIRM Length = 163 Score = 140 bits (354), Expect = 1e-32, Method: Composition-based stats. Identities = 42/130 (32%), Positives = 67/130 (51%), Gaps = 2/130 (1%) Query: 6 QKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDV 64 + + ++ VE +G L + F + G LR+ ID ++ ++ D C VS + +LD Sbjct: 12 KTVETLVRPTVEGMGLRLWDVRFEKEGPDWFLRVLIDRDEPLDTDTCEAVSRAIDPILDE 71 Query: 65 EDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQ-NRRKWQGVIKAVDGE 123 DPI +Y LEV SPGL R L EHY G++ L + RR G+++ +DGE Sbjct: 72 ADPIDQSYYLEVGSPGLGRRLTRPEHYEALRGQKCAAHLIRPDEAGRRDVAGILQGLDGE 131 Query: 124 MITVTVEGKD 133 V+G++ Sbjct: 132 GNVTLVDGEE 141 >UniRef50_Q07V75 Ribosome maturation factor rimP n=14 Tax=Bradyrhizobiaceae RepID=RIMP_RHOP5 Length = 272 Score = 140 bits (353), Expect = 1e-32, Method: Composition-based stats. Identities = 45/139 (32%), Positives = 77/139 (55%), Gaps = 7/139 (5%) Query: 16 VEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVEDPITVAYNL 74 + +G+ LV I+ T++I + DG + ++DC +S +S VLDV DPI AY L Sbjct: 49 LHGMGYRLVRIKVSGELGCTVQIMAERPDGTMLIEDCEAISKALSPVLDVADPIDKAYRL 108 Query: 75 EVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTVEGKD- 133 EVSSPG+DRPL + R+ G V + + + Q R++++G++ ++G+ + + EG Sbjct: 109 EVSSPGIDRPLVRRSDFERYAGYLVKIDMAVPHQGRKRFRGILGGIEGDAVHLQREGVRG 168 Query: 134 -----EVFALSNIQKANLV 147 + + +I A LV Sbjct: 169 DDDPAVLLTIEDISDARLV 187 >UniRef50_A6LMV9 Ribosome maturation factor rimP n=1 Tax=Thermosipho melanesiensis BI429 RepID=RIMP_THEM4 Length = 147 Score = 140 bits (353), Expect = 1e-32, Method: Composition-based stats. Identities = 46/151 (30%), Positives = 71/151 (47%), Gaps = 7/151 (4%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFI-RGRTSTLRIYIDSE-DGINVDDCADVSHQV 58 M + ++ ++ E EL +++ + L I ID+ D I+ DC +VS ++ Sbjct: 1 MKDIVSQVKDIAQKICEEFHLELFDVKYYNKSGRWFLEIIIDNPYDYISTKDCENVSRKL 60 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 LD + I Y L VSSPGL+RPL + + RF G++ + R + G IK Sbjct: 61 EFELDKINIIPNKYYLTVSSPGLNRPLRNVKDFERFTGKKAKIKTRENT-----YIGYIK 115 Query: 119 AVDGEMITVTVEGKDEVFALSNIQKANLVPH 149 V +IT +GK F I+KANL Sbjct: 116 NVVDNIITFETDGKFIEFKFEEIKKANLEID 146 >UniRef50_C7H124 Putative uncharacterized protein n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H124_9FIRM Length = 187 Score = 140 bits (353), Expect = 2e-32, Method: Composition-based stats. Identities = 49/185 (26%), Positives = 79/185 (42%), Gaps = 36/185 (19%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDS------------------ 42 +E + E A + L E+ +E+ R G+ LR+YID Sbjct: 3 KEIENAVEEACKAKLAELSLEIYSVEYKREGKDWILRVYIDRMFCEDAVGIGYDKQAGMN 62 Query: 43 -----------------EDGINVDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGLDRPL 85 E I +D+C +S +S LD D I Y LEVS+PG+DR L Sbjct: 63 TDARCQKAQGIKADSKREKPIGIDECTAISEAISEYLDKNDIIDNNYYLEVSTPGIDREL 122 Query: 86 FTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTVEGKDEVFALSNIQKAN 145 + RF G V + L + +++++G + + E I V V+ +VF+ +++ K N Sbjct: 123 KKDIDFIRFKGRSVDISLYKRIDGQKEYRGTLIEKNDEGIAVEVDESTKVFSNNDVAKVN 182 Query: 146 LVPHF 150 L F Sbjct: 183 LAIEF 187 >UniRef50_B1MZH7 Ribosome maturation factor rimP n=3 Tax=Leuconostoc RepID=RIMP_LEUCK Length = 158 Score = 139 bits (352), Expect = 2e-32, Method: Composition-based stats. Identities = 50/156 (32%), Positives = 78/156 (50%), Gaps = 7/156 (4%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDG--INVDDCADVSHQV 58 + + Q+++ +I + A L + + + G LRI ID + I +DD + V Sbjct: 3 NKVAQEISTLIEPLINAQQLLLWDVSYTKEGGQKVLRILIDKRNHEFITMDDITTFTQAV 62 Query: 59 SAVLD--VEDPITVAYNLEVSSPGLDRPLFTAEHYA--RFVGEEVTLVLRMAVQNRRKWQ 114 + +LD DPI AY L++SSPG DRPL HY + GE + + +A ++KWQ Sbjct: 63 NELLDTIEPDPIPEAYMLDISSPGADRPLIRPWHYEWAKASGENILVAFFVAKNGQKKWQ 122 Query: 115 GVIKAVDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 G I+ +D + IT+T + V I KA L F Sbjct: 123 GKIETIDDKGITLTTSSETIVCTFDEIAKAVLDTQF 158 >UniRef50_Q7MQU0 Ribosome maturation factor rimP n=1 Tax=Wolinella succinogenes RepID=RIMP_WOLSU Length = 142 Score = 139 bits (352), Expect = 2e-32, Method: Composition-based stats. Identities = 49/137 (35%), Positives = 74/137 (54%), Gaps = 8/137 (5%) Query: 10 EMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPI 68 E I V++ G L + ++ S LR+YI E G+++DDCA VS +S +LDVEDP+ Sbjct: 8 EKIEKLVQSCGCNLYDLLLLKENERSILRLYITKEVGVSLDDCAMVSDLISPLLDVEDPL 67 Query: 69 TVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVT 128 Y LEVSSPG++RPL HY +GE + ++ + +G I+A D + + Sbjct: 68 AGEYFLEVSSPGIERPLKRPAHYQHALGELARIK----FADKNEIEGEIEAADETSVKL- 122 Query: 129 VEGKDEVFALSNIQKAN 145 +E S I+KA Sbjct: 123 --KGEEPIPYSLIKKAQ 137 >UniRef50_A6WWW8 Ribosome maturation factor rimP n=37 Tax=Rhizobiales RepID=RIMP_OCHA4 Length = 224 Score = 139 bits (352), Expect = 2e-32, Method: Composition-based stats. Identities = 51/153 (33%), Positives = 78/153 (50%), Gaps = 7/153 (4%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSA 60 + ++ K+ +I + LGF LV + TL+I + DG + VDDC VS V+ Sbjct: 25 TGIDAKVASIIEPVINTLGFRLVRVRLSGLNGQTLQIMAERPDGTMTVDDCELVSRTVAP 84 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 VLDVEDPI+ Y+LE+SSPG+DRPL +A + G + + + R+K++G I Sbjct: 85 VLDVEDPISGKYHLEISSPGIDRPLVRKSDFADWAGHIAKVETSVVHEGRKKFRGRIVLG 144 Query: 121 DGEMITVTVE----GKD--EVFALSNIQKANLV 147 D E + + + G + I A LV Sbjct: 145 DAESVVIESDQISYGSEPVVRIPFDLISDARLV 177 >UniRef50_B8GX01 Ribosome maturation factor rimP n=4 Tax=Caulobacteraceae RepID=RIMP_CAUCN Length = 191 Score = 139 bits (351), Expect = 3e-32, Method: Composition-based stats. Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 11/154 (7%) Query: 5 EQKLTEMITAPVEALGFELVGIEFIRG-RTSTLRIYIDSE-------DGINVDDCADVSH 56 ++ L EM+ E+LG+E+V + + G L+I + +NV+DCA +S Sbjct: 8 DRDLIEMLDPVAESLGYEIVRLRLMGGTEQRRLQIMAEHPLLEDGSGGDMNVEDCAKLSR 67 Query: 57 QVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGV 116 VS VLD DPI Y LEVSSPG+DRPL + + + G E + L + R++++G Sbjct: 68 AVSEVLDAADPIAGEYTLEVSSPGIDRPLTRLKDFDDYAGLEARIELDRVAEGRKRFKGE 127 Query: 117 IKAVDGEMITVTVEGKDEV---FALSNIQKANLV 147 + V+ + + + +EG+D+V F + + A LV Sbjct: 128 LAGVEDDQVGLNIEGEDDVTVYFPFAWVIDAKLV 161 >UniRef50_C1SH19 Uncharacterized conserved protein n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SH19_9BACT Length = 169 Score = 139 bits (350), Expect = 3e-32, Method: Composition-based stats. Identities = 51/142 (35%), Positives = 75/142 (52%), Gaps = 6/142 (4%) Query: 15 PVEALGFELVGIEFIRGRTS-TLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPIT--VA 71 + G EL + R LRI ID E G ++DC + S +SA LD ED I Sbjct: 28 VLSEKGLELFDMTLRSERGGKVLRITIDKETGPGIEDCTEASRAISAFLDGEDNIVPLDK 87 Query: 72 YNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQ-NRRKWQGVIKAVDGEMITVTVE 130 Y+LEVS+PGL+RPL + + + R G++ ++ + R+ + G I +VD +T+ VE Sbjct: 88 YHLEVSTPGLERPLRSQQDFVRQTGKKCKIITVNKDESGRKSYTGKIDSVDDSKVTLYVE 147 Query: 131 GKD--EVFALSNIQKANLVPHF 150 + +L NI KANLV F Sbjct: 148 KESAAFEISLDNISKANLVVEF 169 >UniRef50_D2MK27 Putative uncharacterized protein n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MK27_9BACT Length = 157 Score = 139 bits (350), Expect = 4e-32, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 7/157 (4%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFI-RGRTSTLRIYIDSEDGINVDDCADVSHQVS 59 M+ L + + +AL E++ +E +G + +R+ ++ E G+ + DC + Sbjct: 1 MNGLGSLVQGIAEPIAKALRLEIIEVECHGQGAKTIVRVIVEKEGGVGIQDCEQFHQSLG 60 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 LDV DP+ AY L+VSSPGLDRPL + Y + VG + + + VQ + G + Sbjct: 61 RALDVADPVAHAYRLDVSSPGLDRPLKRRKDYDQAVGRTIRVKVHAPVQGKGTVVGQLAE 120 Query: 120 VDGEMITVTVE------GKDEVFALSNIQKANLVPHF 150 VD + IT+ V + I A L + Sbjct: 121 VDDQGITLQVPVRKSRTPRRVALEWDAIAHAKLEIEW 157 >UniRef50_C9M6Q7 Putative uncharacterized protein n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M6Q7_9BACT Length = 173 Score = 139 bits (350), Expect = 4e-32, Method: Composition-based stats. Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 1/148 (0%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVL 62 L +LT ++ V LG+ G++ + T+R++ID +G+ DDC VS + +L Sbjct: 7 ALRGELTALLKPVVVELGYRWEGLQLEEIGSMTVRVFIDGPNGVTADDCEVVSKAIDPLL 66 Query: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 + + Y LEVSSPGL+R LF + Y RF+GE + + ++ GV++AVD Sbjct: 67 EGAMADSNRYYLEVSSPGLERFLFELDDYRRFIGETARIRFHGEGSHIKRLTGVVEAVDE 126 Query: 123 EM-ITVTVEGKDEVFALSNIQKANLVPH 149 E +T+ E + +I + +LV Sbjct: 127 EGRVTIHTEEETAAIPFEDIVEGSLVYK 154 >UniRef50_C0QHM0 Ribosome maturation factor rimP n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=RIMP_DESAH Length = 155 Score = 138 bits (348), Expect = 7e-32, Method: Composition-based stats. Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 1/140 (0%) Query: 8 LTEMITAPVEALGFELVGIEFIRGRTS-TLRIYIDSEDGINVDDCADVSHQVSAVLDVED 66 + + A GFELV +E + + +RIY+D GI +DDC ++ + ++DVE Sbjct: 15 IESIAEPLCIAEGFELVHVECVSDQGGMIVRIYLDKPGGITLDDCVHMTRHLGDIIDVEL 74 Query: 67 PITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMIT 126 AY LE+SSPG RPL + RF+G V + + R K+ G++ V + Sbjct: 75 EEISAYRLEISSPGAKRPLKKLADFERFLGSRVKVEAVEPIGGRLKFTGILSKVQDGCVE 134 Query: 127 VTVEGKDEVFALSNIQKANL 146 V V + VF I K+ L Sbjct: 135 VVVNNEPVVFHFEQISKSRL 154 >UniRef50_D0XR54 Putative uncharacterized protein n=1 Tax=Brevundimonas subvibrioides ATCC 15264 RepID=D0XR54_9CAUL Length = 232 Score = 137 bits (345), Expect = 1e-31, Method: Composition-based stats. Identities = 44/148 (29%), Positives = 82/148 (55%), Gaps = 5/148 (3%) Query: 5 EQKLTEMITAPVEALGFELVGIEFIRGR-TSTLRIYIDS--EDGINVDDCADVSHQVSAV 61 ++++ E+I +++G +V + + G L++ + ++ I+V +CA +S +S V Sbjct: 43 DREILELIDPVADSIGLSIVRVRLMGGTLRRRLQVMAERPSDNDIDVGECARLSRAMSEV 102 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 LD DPI Y LEVSSPG+DRPL + + F G E L ++ R++++G++ D Sbjct: 103 LDAADPIAGEYLLEVSSPGIDRPLTRLKDFDLFEGLEARLESDRMIEGRKRFKGILAGTD 162 Query: 122 GEMITVTVEGKDEV--FALSNIQKANLV 147 G+ I + ++G+D+ + A LV Sbjct: 163 GDNIAIDLDGEDDTALIPFDWLVDAKLV 190 >UniRef50_C9RKT2 Putative uncharacterized protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RKT2_FIBSS Length = 150 Score = 137 bits (345), Expect = 1e-31, Method: Composition-based stats. Identities = 47/149 (31%), Positives = 77/149 (51%), Gaps = 8/149 (5%) Query: 5 EQKLTEMITAPVEALGFELVGIE-FIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLD 63 ++KL +I ++ LV + F G+ TLRI+ID +G+ +DDC +VSH +S LD Sbjct: 4 QEKLNSLIADACKSASVTLVEADVFRAGKRKTLRIFIDKPEGVTIDDCTNVSHFLSDALD 63 Query: 64 VE-DPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 ++ + I AY LEVSSPG+DRPL + + R G + + + G + D Sbjct: 64 LDPELIEGAYTLEVSSPGIDRPLKSMADFERNKGRLLRVT----RSTGKPVTGELLNADE 119 Query: 123 EMITVTVEG--KDEVFALSNIQKANLVPH 149 E +T+ ++G + V S + A + Sbjct: 120 ENLTLKLKGNAGEIVIPRSEVLSAKVEVE 148 >UniRef50_Q6MMS8 Ribosome maturation factor rimP n=1 Tax=Bdellovibrio bacteriovorus RepID=RIMP_BDEBA Length = 174 Score = 137 bits (345), Expect = 1e-31, Method: Composition-based stats. Identities = 46/159 (28%), Positives = 83/159 (52%), Gaps = 15/159 (9%) Query: 7 KLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSE--DGINVDDCADVSHQVSAVLD 63 K+ ++ A G L IEF+ G+ TLR++ID E I+++DC +VS +S +LD Sbjct: 10 KVEKIANDVAAAQGCVLYDIEFVGLGKGRTLRLFIDREEEGAISIEDCTNVSRGLSEILD 69 Query: 64 VEDPI--TVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQ----------NRR 111 ++ + YNLEVS+PGLDR L H+ + +G++V + A++ N + Sbjct: 70 ADEEMIPGGEYNLEVSTPGLDRHLKKPWHFKKAIGKKVYIKTTKALESVGVEDKKWKNAK 129 Query: 112 KWQGVIKAVDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 + V+++ D + + V+ + + I +A LV + Sbjct: 130 TVEEVLESADEQGVRFVVKDVEIKIPYAMIDRAKLVFEY 168 >UniRef50_C5NYH1 Putative uncharacterized protein n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NYH1_9BACL Length = 154 Score = 136 bits (344), Expect = 2e-31, Method: Composition-based stats. Identities = 53/153 (34%), Positives = 81/153 (52%), Gaps = 5/153 (3%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAV 61 ++ +K+ + T E F L +E+++ G LRIY D + G+ +DDC +S +++ Sbjct: 2 SIVEKVKAIATKQAENTEFSLYDVEYVKEGTEYFLRIYFDKDGGLTLDDCVLLSEKLAEE 61 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 LD ED I+ Y LEVSSPG++R L E VG+ V + + N++++ G I AV+ Sbjct: 62 LDKEDFISDKYYLEVSSPGIERDLRDLEEVTNSVGKHVYIKTYEKIDNQKEFYGDILAVE 121 Query: 122 GEMITVTVEGKDEV----FALSNIQKANLVPHF 150 GE ITV + K V S I K L F Sbjct: 122 GEEITVEYKDKARVKKSTINYSKIAKIRLAVKF 154 >UniRef50_C6HXJ9 Putative uncharacterized protein n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HXJ9_9BACT Length = 171 Score = 136 bits (343), Expect = 2e-31, Method: Composition-based stats. Identities = 43/129 (33%), Positives = 72/129 (55%) Query: 6 QKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVE 65 ++LTE IT ++++G L + + LR+++D +G+ +D VS +VS +LDV Sbjct: 11 ERLTEEITLLLDSMGLTLYDLVLPKKSGGVLRVFVDGPEGVTIDQIESVSRRVSVLLDVL 70 Query: 66 DPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMI 125 DP Y+LEVSSPGLDR L E + G+ V+L L A++ ++ +G I +V Sbjct: 71 DPFPGRYHLEVSSPGLDRLLKIPEDLRKNEGKWVSLKLVDAIEGQKVLKGRIGSVGDAGF 130 Query: 126 TVTVEGKDE 134 + V+ + Sbjct: 131 FLHVDAGKK 139 >UniRef50_C7H6A0 Protein associated with NUS operon n=2 Tax=Clostridiales RepID=C7H6A0_9FIRM Length = 163 Score = 135 bits (342), Expect = 3e-31, Method: Composition-based stats. Identities = 51/146 (34%), Positives = 77/146 (52%), Gaps = 4/146 (2%) Query: 6 QKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDD--CADVSHQVSAVL 62 Q++ ++ VE +G L + F + G LR+ ID DG +D CADVSH + +L Sbjct: 11 QRVEALVRPTVEGMGLRLWDVVFEKEGPDWYLRVLIDKTDGTTMDTDTCADVSHALDPIL 70 Query: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNR-RKWQGVIKAVD 121 D DPI +Y LEV SPGL R L EHY G++V++ L A +N +++ G++ + + Sbjct: 71 DEADPIEQSYYLEVGSPGLGRKLTRPEHYEAVQGQKVSVRLYRANENGVKEFSGLLTSRE 130 Query: 122 GEMITVTVEGKDEVFALSNIQKANLV 147 G IT+ F LS + L Sbjct: 131 GNTITLEGPAGPMQFELSAVSTVRLC 156 >UniRef50_A6Q228 Ribosome maturation factor rimP n=3 Tax=Epsilonproteobacteria RepID=RIMP_NITSB Length = 142 Score = 135 bits (342), Expect = 3e-31, Method: Composition-based stats. Identities = 42/144 (29%), Positives = 73/144 (50%), Gaps = 5/144 (3%) Query: 8 LTEMITAPVEALGFELVGIEFIRGRTSTL-RIYIDSEDGINVDDCADVSHQVSAVLDVED 66 L + I VE+ G +L IE + R T+ R+ I + +G+++ C ++S+ +S +LDV Sbjct: 3 LEQEIKQIVESCGAKLYDIETVSDRGKTIYRVTITAPEGVDLQKCVEISNLISPLLDVHP 62 Query: 67 PITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMIT 126 P++ YNLEVSSPG++R L H+ VGE+V + + +GV+ +T Sbjct: 63 PVSGDYNLEVSSPGVERKLKKPSHFEHSVGEKVRVT----KNDGETIEGVLSDFRDHTLT 118 Query: 127 VTVEGKDEVFALSNIQKANLVPHF 150 + + L I A + + Sbjct: 119 LQTKNGPIEIPLDQITYAKTIFEW 142 >UniRef50_A1UU47 Ribosome maturation factor rimP n=5 Tax=Bartonella RepID=RIMP_BARBK Length = 209 Score = 135 bits (342), Expect = 3e-31, Method: Composition-based stats. Identities = 44/149 (29%), Positives = 80/149 (53%), Gaps = 5/149 (3%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVL 62 +E + ++ ++ LG+ LV ++ + TL+I + DG + ++DC +S +S +L Sbjct: 24 VEALVVALVAPLLKPLGYRLVRVKLLGLNGLTLQIMAERADGTMTIEDCEIISKTISPLL 83 Query: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 DV++ I Y+LE+SSPG+DRPL + + G + R V RRK++G ++ V Sbjct: 84 DVQNVIERKYHLEISSPGIDRPLVRKSDFFHWQGYTAKIETRTIVNGRRKFRGALENVTQ 143 Query: 123 EMITVTVEGKDEV----FALSNIQKANLV 147 + + ++ E + SNI A+LV Sbjct: 144 DGFILNIDAAPEEETVYVSFSNITNAHLV 172 >UniRef50_C5CEP0 Putative uncharacterized protein n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CEP0_KOSOT Length = 167 Score = 135 bits (341), Expect = 4e-31, Method: Composition-based stats. Identities = 48/153 (31%), Positives = 78/153 (50%), Gaps = 4/153 (2%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGRTS-TLRIYIDSEDG-INVDDCADVSHQV 58 M L +KL ++ E LG+E+ + F +GR L + ID EDG I++ DC + S Sbjct: 14 MYELTEKLRKLAEEVAEELGYEIYKLTFGKGRRRAVLTVAIDKEDGYISISDCENFSRAF 73 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 LD + I+ +YNL + SPG +R L + RF G+ V +VL+ ++NR G + Sbjct: 74 EKKLDETEIISSSYNLVIESPGAERELRKPGDFMRFTGKSVKIVLKEPLENRSVLVGQLI 133 Query: 119 AVDGEMITVTVEGKDEVF--ALSNIQKANLVPH 149 + +++T+ + F I+KANL Sbjct: 134 NANEDLVTIIEADSNRTFEVEYRMIKKANLRLE 166 >UniRef50_A7ZC71 Ribosome maturation factor rimP n=3 Tax=Campylobacter RepID=RIMP_CAMC1 Length = 138 Score = 135 bits (341), Expect = 4e-31, Method: Composition-based stats. Identities = 45/142 (31%), Positives = 66/142 (46%), Gaps = 6/142 (4%) Query: 10 EMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPI 68 + + + G EL E + R+YI + G+++DDC VS +S + DV P+ Sbjct: 2 DNLDKLIRECGVELYDSEIANENGRAIFRVYITKDGGVSLDDCEKVSRLLSPIFDVTPPV 61 Query: 69 TVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVT 128 + YNLEVSSPGL+R L H+ VGE V + K+ G + D E I V Sbjct: 62 SGDYNLEVSSPGLERKLSKPSHFKASVGELVKVQTEA-----EKFAGRLVKADEESIAVE 116 Query: 129 VEGKDEVFALSNIQKANLVPHF 150 E +S I+KA + Sbjct: 117 NEEGIFEINISEIKKAKTYLEW 138 >UniRef50_D1B0G8 Putative uncharacterized protein n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B0G8_SULD5 Length = 142 Score = 134 bits (338), Expect = 9e-31, Method: Composition-based stats. Identities = 51/143 (35%), Positives = 80/143 (55%), Gaps = 5/143 (3%) Query: 9 TEMITAPVEALGFELVGIEFIRG-RTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDP 67 TE + +E+ G L E + RIYI S++GIN+D CA+VS +S + DVE P Sbjct: 4 TEQLIKIIESCGVSLYDTEVVSEFDKKIFRIYITSKEGINLDKCAEVSRILSPIFDVEPP 63 Query: 68 ITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITV 127 + Y EVSSPG++R L EH++ VGE+V + L+ N+ K+ G+++ + V Sbjct: 64 LEGEYLFEVSSPGIERKLLKPEHFSVSVGEKVKIKLK----NKEKFIGILEGFANNTLQV 119 Query: 128 TVEGKDEVFALSNIQKANLVPHF 150 VE + + AL +I+KA + Sbjct: 120 RVENEVKEIALDDIEKARTYFEW 142 >UniRef50_A6T0Z0 Ribosome maturation factor rimP n=7 Tax=Betaproteobacteria RepID=RIMP_JANMA Length = 161 Score = 133 bits (336), Expect = 1e-30, Method: Composition-based stats. Identities = 58/156 (37%), Positives = 85/156 (54%), Gaps = 17/156 (10%) Query: 7 KLTEMITAPVEALGFELVGIEFIRGRTSTLRIYID------SEDGINVDDCADVSHQVSA 60 +L+ +I V +G+ELV F + +R++ID + I V+DC V+HQ+ Sbjct: 2 QLSALIEKTVVGMGYELVN--FEQAARGLVRVFIDFTPEDADKGAITVEDCEKVTHQLLH 59 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAV---QNRRKWQGVI 117 VL VE+ LEVSSPGLDRPL Y RF G E + LRM + NR+ +QG++ Sbjct: 60 VLTVENANYE--RLEVSSPGLDRPLKKLSDYVRFAGAEALVKLRMPMPNAANRKSFQGIL 117 Query: 118 KAVDGEMITVTVEGKD----EVFALSNIQKANLVPH 149 + GE + + EG D F L+++ KA+LVP Sbjct: 118 QEPVGETLALEFEGNDGPAKLEFTLADVDKAHLVPQ 153 >UniRef50_B6BVK2 Putative uncharacterized protein n=1 Tax=beta proteobacterium KB13 RepID=B6BVK2_9PROT Length = 158 Score = 133 bits (336), Expect = 1e-30, Method: Composition-based stats. Identities = 50/143 (34%), Positives = 80/143 (55%), Gaps = 3/143 (2%) Query: 8 LTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDP 67 L ++I+ ++ +G+ELV E + +RI+ID+ + I+VDDC VS+ ++ VL VE Sbjct: 17 LEKIISESIQNIGYELVECE-HNHNSGLIRIFIDNGNLISVDDCVKVSNHLNRVLSVELD 75 Query: 68 ITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITV 127 + LEVSSPG+DR L Y RF GE++ + L + N++K+ G + A D + I + Sbjct: 76 YDFS-RLEVSSPGVDRKLIKLADYKRFEGEKIKIKLYSPINNQKKFDGKLIASDEKKIKI 134 Query: 128 TV-EGKDEVFALSNIQKANLVPH 149 + + K IQ A L P Sbjct: 135 LLSDEKILEVPFDEIQMARLNPD 157 >UniRef50_Q1MQZ0 Ribosome maturation factor rimP n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=RIMP_LAWIP Length = 196 Score = 133 bits (336), Expect = 1e-30, Method: Composition-based stats. Identities = 42/175 (24%), Positives = 82/175 (46%), Gaps = 26/175 (14%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYID---------------SEDGI 46 + L + +T++I+ + A G +L GIE I ++I++D + I Sbjct: 4 AALIETITQLISPLITAQGLKLWGIELINIPQPIIKIFVDTIETNRLHENNIINSKSEQI 63 Query: 47 NVDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRM- 105 ++ CA +S + L+VE+ + LEVSSPGL+R FT + + ++ ++ + L+ Sbjct: 64 TIEQCASLSRLIGLTLEVEELFPNKWTLEVSSPGLERSFFTIQQLSNYINHDIDVTLKEQ 123 Query: 106 --AVQNRRKWQGVIKAVDGEMITVTV--------EGKDEVFALSNIQKANLVPHF 150 NR+K+ G + ++ + + E ++ ++KA LV HF Sbjct: 124 HPLWPNRKKFYGTLISITDNTFMLNLSLAHRKSDEPENVSINWQQVRKATLVHHF 178 >UniRef50_Q2NC14 Ribosome maturation factor rimP n=2 Tax=Erythrobacter RepID=RIMP_ERYLH Length = 188 Score = 133 bits (336), Expect = 1e-30, Method: Composition-based stats. Identities = 52/159 (32%), Positives = 83/159 (52%), Gaps = 13/159 (8%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFI----RGRTSTLRIYIDSE--DGINVDDCADV 54 M+ L +LT +I +ALGFELV ++ + L+I + + ++ CA++ Sbjct: 1 MADLA-RLTALIEPEAKALGFELVRVKMMPSEAGDGGQALQIMAEDPATGQLLIEQCAEL 59 Query: 55 SHQVSAVLDVED-----PITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQN 109 S +VS V+D + I AY+LEVSSPG+DRPL + +A + G E + L + Sbjct: 60 SRKVSDVIDAAEESGEVLIEGAYHLEVSSPGIDRPLTRPKDFADWAGHEAKVSLVEKIDG 119 Query: 110 RRKWQGVIKAVDGEMITVTVE-GKDEVFALSNIQKANLV 147 R +G++ +DGE +T+ + FAL I A LV Sbjct: 120 HRNMRGILLGIDGETVTIADNRAGEVSFALEQIHSAKLV 158 >UniRef50_C7NAM7 Putative uncharacterized protein n=2 Tax=Fusobacteriaceae RepID=C7NAM7_LEPBD Length = 163 Score = 133 bits (336), Expect = 2e-30, Method: Composition-based stats. Identities = 45/154 (29%), Positives = 83/154 (53%), Gaps = 7/154 (4%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDG--INVDDCADVSHQ 57 M + + + I ++ + EL +E++R G + LR+Y++ EDG +DDC D S + Sbjct: 1 MEQILNEFEKRIELHLKEMKLELADLEYVRDGGYNYLRVYVEKEDGSTTTLDDCIDFSRE 60 Query: 58 VSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI 117 + V D D I + LEVS+PG++R L + + RF+GE++ + + + +K+ G + Sbjct: 61 IDGVAD--DLIDEKFFLEVSTPGVERRLKKPKDFLRFLGEKINVQAKSNIDGAKKFLGKL 118 Query: 118 KAVDGEMITVTVE--GKDEVFALSNIQKANLVPH 149 + + + I + E GK L ++KANL+ Sbjct: 119 EKFENDTIFLLDENLGKVVEIPLLKLKKANLIYE 152 >UniRef50_B0S1E8 Ribosome maturation factor rimP n=2 Tax=Finegoldia magna RepID=RIMP_FINM2 Length = 154 Score = 133 bits (336), Expect = 2e-30, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 73/137 (53%), Gaps = 2/137 (1%) Query: 12 ITAPVEALGFELVGIEFIRG-RTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVEDPIT 69 ++ ++ G E +E+ + L YI+ +DG I++DDC +++++S LD DPI+ Sbjct: 14 LSPLIKDTGIEFYDVEYSNNNGKNILTFYIEKDDGLISIDDCELINNKISDKLDEIDPIS 73 Query: 70 VAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTV 129 Y LE++S + P + + + +G V + L + ++++++G++ + I++ + Sbjct: 74 DPYYLEIASVDITTPFTRDKDFKKNLGNVVIVNLYQKLDSKKEFKGILTDFNDTEISLEL 133 Query: 130 EGKDEVFALSNIQKANL 146 E K+ SNI L Sbjct: 134 EKKEIKIERSNISSIKL 150 >UniRef50_C4XIM4 Putative uncharacterized protein n=2 Tax=Desulfovibrio RepID=C4XIM4_DESMR Length = 189 Score = 133 bits (335), Expect = 2e-30, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 80/163 (49%), Gaps = 14/163 (8%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEF-IRGRTSTLRIYIDSED---------GINVDDC 51 + + + ++I LG + G+E G +R+Y+D G+ +D+C Sbjct: 5 NAVADAVRDLIAPYAATLGLAVWGVELASAGHRQLVRLYLDLAADTPRTPERLGVTIDEC 64 Query: 52 ADVSHQVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRR 111 A VS + A+L+V++ Y LEVSSPGL R F A +VG E+ L + + R+ Sbjct: 65 ARVSRHLGALLEVDEIFHNPYVLEVSSPGLSRRFFEAGQLLAYVGREIEAKLAVPREGRK 124 Query: 112 KWQGVIKAVDGEMITVTVEGKDEVFA----LSNIQKANLVPHF 150 +++G++ V + +++TV+ + F+ + K L+ F Sbjct: 125 RFKGILSGVSDQTVSMTVDPGAKEFSISFDFAEADKIRLIHAF 167 >UniRef50_Q5HX28 Ribosome maturation factor rimP n=18 Tax=Campylobacter RepID=RIMP_CAMJR Length = 140 Score = 133 bits (335), Expect = 2e-30, Method: Composition-based stats. Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 7/142 (4%) Query: 12 ITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPITV 70 + A + G E + RIY+ E G+N+DDCA +S +S + DVE P+ Sbjct: 3 LEALCKEAGLSFYDDELVSENGRKIYRIYVQKEGGVNLDDCARLSEILSPIFDVESPVNG 62 Query: 71 AYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVT-- 128 Y LEVSSPGL+R L EH+A+ +GE V + + K++ I AVD E IT+ Sbjct: 63 EYFLEVSSPGLERKLSKIEHFAKSIGELVKITT----NEKEKFEAKIIAVDDENITLENL 118 Query: 129 VEGKDEVFALSNIQKANLVPHF 150 + ++I+KA + Sbjct: 119 ENKEKTTINFNDIKKARTFVEW 140 >UniRef50_A8SMZ9 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SMZ9_9FIRM Length = 154 Score = 133 bits (335), Expect = 2e-30, Method: Composition-based stats. Identities = 40/142 (28%), Positives = 79/142 (55%), Gaps = 1/142 (0%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRG-RTSTLRIYIDSEDGINVDDCADVSHQVSA 60 + L + + + + G V +E+++ + + LRI+ID + G+++D C S+ +S Sbjct: 5 NELLKTIEKNFKTILLEKGIYFVNVEYVKEPKGNVLRIFIDKDGGVDLDSCEMTSNIISD 64 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 LD DPI +Y LEVSSPG++R + + E F+G++V + + N +++ G +K+ Sbjct: 65 WLDEVDPIEDSYFLEVSSPGVEREIKSDEQLKTFIGKKVLVKCYKKINNEKEFIGYLKSF 124 Query: 121 DGEMITVTVEGKDEVFALSNIQ 142 D E +T+ + +F+ +I Sbjct: 125 DREKLTLEIGKSSIIFSRKDIA 146 >UniRef50_C5F193 Putative uncharacterized protein n=2 Tax=Helicobacter RepID=C5F193_9HELI Length = 143 Score = 133 bits (335), Expect = 2e-30, Method: Composition-based stats. Identities = 47/148 (31%), Positives = 79/148 (53%), Gaps = 8/148 (5%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVL 62 + Q+L I VE+ G ++ I ++ LRI I + +++DDC +VS +S +L Sbjct: 3 ISQELQAKIQKLVESFGCKIYDITTLKENENQILRISITKKPSVSLDDCQEVSLALSPLL 62 Query: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 DVE P Y LEVSSPG++RPL T EH+ +GE + + ++ ++G + A+D Sbjct: 63 DVEIPNFEKYYLEVSSPGIERPLKTKEHFEDAIGELIKIKTIS----KQDFKGKLIAIDD 118 Query: 123 EMITVTVEGKDEVFALSNIQKANLVPHF 150 E + + E+ +S I+KA + Sbjct: 119 ESLKLE---SGEIIPISEIKKAQTYFEW 143 >UniRef50_D2SDW9 Putative uncharacterized protein n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2SDW9_9ACTO Length = 196 Score = 132 bits (334), Expect = 2e-30, Method: Composition-based stats. Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 15/158 (9%) Query: 7 KLTEMITAPVEALGFELVGIEFI-RGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVE 65 ++ ++ VEA G++L + GR S +R+ +D + G+ +DD A+VS VS LD Sbjct: 13 RMAGLVAPVVEAAGYDLEELVVTPAGRRSIVRVVVDRDAGVTLDDVAEVSRAVSTALDEH 72 Query: 66 D--PITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGE 123 D + Y LEV+SPG+DRPL H+ R G VT+ + + + + VDG+ Sbjct: 73 DGEFGSAPYVLEVTSPGVDRPLTEPRHWRRNTGRLVTVAVGR-EGSSEQVTARVLEVDGD 131 Query: 124 MITVTVEGKDE-----------VFALSNIQKANLVPHF 150 +T+ VE K + + + F Sbjct: 132 GVTLAVEAKGKPGAKKRPPTRRQVPWQELGAGRVQVEF 169 >UniRef50_B1VYN8 Ribosome maturation factor rimP n=13 Tax=Streptomyces RepID=RIMP_STRGG Length = 167 Score = 132 bits (334), Expect = 3e-30, Method: Composition-based stats. Identities = 56/159 (35%), Positives = 75/159 (47%), Gaps = 11/159 (6%) Query: 1 MSTLE-QKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQV 58 MST + ++L ++ V A +L IE R GR LRI +DSE+G+ +D CA++S + Sbjct: 1 MSTTQSERLRGLLEPLVSAQQLDLEEIEVSRAGRRGVLRIIVDSEEGVELDACAELSRAI 60 Query: 59 SAVLDVEDPI-TVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI 117 S LD D + Y LEVSSPG DRPL HY R G L A + I Sbjct: 61 SEKLDETDAMGEGEYVLEVSSPGADRPLTEHRHYVRATGRLARFHL--AGDGSGELVARI 118 Query: 118 KAVDGEMITVTVEGKD------EVFALSNIQKANLVPHF 150 AVD E + + V G A I +A + F Sbjct: 119 LAVDEEGLDLEVPGVKGRKPTARRLAFDEIARARVEIEF 157 >UniRef50_A1SLL0 Ribosome maturation factor rimP n=2 Tax=Actinomycetales RepID=RIMP_NOCSJ Length = 175 Score = 132 bits (334), Expect = 3e-30, Method: Composition-based stats. Identities = 42/146 (28%), Positives = 75/146 (51%), Gaps = 6/146 (4%) Query: 7 KLTEMITAPVEALGFELVGIEFI-RGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVE 65 ++ + P+ ALG ++ +E G+ LR+ +D + G+ +D+ A+ + +V+ VLD Sbjct: 12 QIEAELDDPLRALGLDIEAVEITPAGKRRILRVAVDKDGGVTLDEVAEATREVNRVLDGS 71 Query: 66 DPI-TVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEM 124 + + Y LEV+S G+DRPL H+ R G V + A + R G I + E Sbjct: 72 EVMGEQPYTLEVTSRGVDRPLTLPRHWRRNAGRLVKV----AFADGRAATGRILDSNEEQ 127 Query: 125 ITVTVEGKDEVFALSNIQKANLVPHF 150 +T+ V G + A + ++KA + F Sbjct: 128 VTLDVGGTRQQVAYAEVKKALVQVEF 153 >UniRef50_C1TMK4 Uncharacterized conserved protein n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TMK4_9BACT Length = 181 Score = 132 bits (334), Expect = 3e-30, Method: Composition-based stats. Identities = 53/141 (37%), Positives = 79/141 (56%), Gaps = 3/141 (2%) Query: 9 TEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDV--E 65 E I VE+LG+E +G+E + S +R+Y+DS GI+V DC VS +++ L+ E Sbjct: 8 KEEIREIVESLGYEFIGLEVKKESAASFVRVYMDSLGGISVRDCEIVSRRINNWLEESGE 67 Query: 66 DPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMI 125 D + Y LEVSSPGL+RPLF+ + + RF G+E ++ L V+ RR+ G++ I Sbjct: 68 DLLDDRYYLEVSSPGLERPLFSLDDFRRFSGKEASIRLNELVEGRRRINGIVSVSQDGSI 127 Query: 126 TVTVEGKDEVFALSNIQKANL 146 V + F L I A L Sbjct: 128 RVENQDGAFEFPLEMILSAKL 148 >UniRef50_B6W939 Putative uncharacterized protein n=1 Tax=Anaerococcus hydrogenalis DSM 7454 RepID=B6W939_9FIRM Length = 146 Score = 132 bits (333), Expect = 3e-30, Method: Composition-based stats. Identities = 48/149 (32%), Positives = 70/149 (46%), Gaps = 5/149 (3%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFI-RGRTSTLRIYIDSEDGINVDDCADVSHQVSAV 61 L KL E + + + LG+ELV IEF+ G LR +I + GI +DDC S+ +S Sbjct: 2 DLISKLKENLESDINNLGYELVDIEFVTEGNNKILRFFIYKDGGITIDDCEKTSNLLSER 61 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 LD D I Y LEVSSP L RPL T R E + + L+ N K+ I+ + Sbjct: 62 LDEIDLIKSFYYLEVSSPDLSRPLKTDRDLERNKDELLEVKLK----NGEKFLANIEEIK 117 Query: 122 GEMITVTVEGKDEVFALSNIQKANLVPHF 150 + E + + + I+ + F Sbjct: 118 ENSLVFKCEDEQKEVDKNEIKTIKIEIVF 146 >UniRef50_C3XMY5 Putative uncharacterized protein n=1 Tax=Helicobacter winghamensis ATCC BAA-430 RepID=C3XMY5_9HELI Length = 150 Score = 132 bits (332), Expect = 4e-30, Method: Composition-based stats. Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 7/152 (4%) Query: 3 TLEQKLTEMITAPVEALGFELVGI-EFIRGRTSTLRIYIDSE---DGINVDDCADVSHQV 58 T+ L + I VE+LGF+L + LRI I +++DDC +VS + Sbjct: 2 TISPNLEDKIKVLVESLGFDLYDVLTLKENENQILRICITKNMESKSVSLDDCQEVSLAL 61 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 S +LDVE P Y LEVSSPG++R L T HY + E + + + +++++G + Sbjct: 62 SPLLDVEMPDFEKYYLEVSSPGIERVLKTLAHYKGAINELIKVKTLQEIAGKKEFKGKLV 121 Query: 119 AVDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 +V ++ + L+ I+KA + Sbjct: 122 SVSESVLVLE---NGVEIPLNAIKKAQTYFEW 150 >UniRef50_A3ER83 Putative uncharacterized protein n=2 Tax=Leptospirillum sp. Group II RepID=A3ER83_9BACT Length = 167 Score = 131 bits (331), Expect = 5e-30, Method: Composition-based stats. Identities = 38/143 (26%), Positives = 71/143 (49%), Gaps = 4/143 (2%) Query: 7 KLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVED 66 + + + + LG L + ++++D G+ +D VS ++S +LDV D Sbjct: 2 RFEKELDHILTPLGLSLHDLVLPGKNRGVFKVFVDHPQGVGLDQLEAVSRRISDLLDVLD 61 Query: 67 PITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMIT 126 P Y LEVSSPGLDR L E VG+ + + ++ Q +R ++G I +++ ++ Sbjct: 62 PFPGKYRLEVSSPGLDRVLRIPEDLLLHVGKHIKVKMKEPFQGQRVFRGTIGSLEAGVLL 121 Query: 127 V-TVEGKDEV---FALSNIQKAN 145 + +VEGK ++ L + + Sbjct: 122 ISSVEGKKQLKHSIPLDLVAEVR 144 >UniRef50_C8W721 Putative uncharacterized protein n=3 Tax=Atopobium RepID=C8W721_ATOPD Length = 164 Score = 131 bits (331), Expect = 6e-30, Method: Composition-based stats. Identities = 45/152 (29%), Positives = 79/152 (51%), Gaps = 6/152 (3%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIRG-RTSTLRIYIDSED----GINVDDCADVSHQV 58 + QK+ + ++V +E + + +R+ ID +D I++D+ A + + Sbjct: 6 VTQKILSALEQAALNHHIDIVDVEIVGSSKNPLVRVRIDHDDETEETISLDEVAQETSWI 65 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 S +D DP ++ LEVSSPG+ RPL A+ + RF G+EV L A + RRK+ G + Sbjct: 66 SETIDELDPFPASFTLEVSSPGMARPLRRAKDFVRFAGQEVQLQT-TATEGRRKFTGTLL 124 Query: 119 AVDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 ++G I++ E + LS ++K + P F Sbjct: 125 GIEGTTISIQTEDEVCTIDLSELKKCVIKPAF 156 >UniRef50_UPI0001C31DB5 protein of unknown function DUF150 n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31DB5 Length = 139 Score = 131 bits (331), Expect = 6e-30, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 76/151 (50%), Gaps = 17/151 (11%) Query: 1 MSTLEQKLTEMI---TAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQ 57 MS +++++ + V E++ E + G +T+R++ID DG++++ C V+H Sbjct: 1 MSRIQEQIETTLSKTEPEV-----EVLLAEVLGG--TTVRLFIDHPDGVSLELCERVTHH 53 Query: 58 VSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI 117 ++ I Y LEVSSPG +RPL H+ R++G+ + R A + + G + Sbjct: 54 LAG-------IRERYGLEVSSPGSERPLTKPAHFRRYLGQRARVRTRGAHGGQGSFTGEL 106 Query: 118 KAVDGEMITVTVEGKDEVFALSNIQKANLVP 148 + +T+ E + I+++NLVP Sbjct: 107 VGANESEVTIAAETGVVAIPYTEIKRSNLVP 137 >UniRef50_C5BWS6 Ribosome maturation factor rimP n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=RIMP_BEUC1 Length = 162 Score = 131 bits (331), Expect = 6e-30, Method: Composition-based stats. Identities = 46/153 (30%), Positives = 67/153 (43%), Gaps = 9/153 (5%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFI-RGRTSTLRIYIDSEDGIN---VDDCADVSHQ 57 + L +L +++ G L + GR +R+ +D DG +D AD S Sbjct: 7 TALLGRLRDLLEPVAAGCGLHLEDVAVSPAGRRRRVRVTLDLADGPGALGSNDLADASRA 66 Query: 58 VSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI 117 VSA LD D +T Y LEVS+PG DRPL H+ R G VTL L G + Sbjct: 67 VSAALDDADVVTGPYVLEVSTPGTDRPLTQPRHFRRAQGRLVTLTLAAGTH----VSGRL 122 Query: 118 KAVDGEMITVTVE-GKDEVFALSNIQKANLVPH 149 + D + I V + G FA +++ + Sbjct: 123 LSADDDGIHVRTDAGATTTFAYADVATGRVEVE 155 >UniRef50_C9MWU5 UPF0090 protein n=2 Tax=Fusobacteriaceae RepID=C9MWU5_9FUSO Length = 162 Score = 131 bits (330), Expect = 7e-30, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 82/153 (53%), Gaps = 6/153 (3%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGIN-VDDCADVSHQV 58 M + + + I ++ + EL +E++R G + LR+Y++ DG +DDC D S ++ Sbjct: 1 MEQILNEFEKKIKQHLKEMNLELADLEYVRDGGYNYLRVYVEKLDGTTTLDDCIDFSREI 60 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 + D D I + LEVS+PG++R L + + RF+GE + + + ++ +K+ G ++ Sbjct: 61 DGIAD--DLIEEKFFLEVSTPGVERRLRKPKDFVRFLGERINVQAKSNIEGAKKFIGKLE 118 Query: 119 AVDGEMITVTVEG--KDEVFALSNIQKANLVPH 149 + + + + + K LS ++KANL+ Sbjct: 119 KFENDTVFLLDDKLEKIVEIPLSKLKKANLIYE 151 >UniRef50_A4E6V0 Putative uncharacterized protein n=3 Tax=Collinsella RepID=A4E6V0_9ACTN Length = 170 Score = 131 bits (330), Expect = 7e-30, Method: Composition-based stats. Identities = 45/153 (29%), Positives = 80/153 (52%), Gaps = 5/153 (3%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRG-RTSTLRIYIDSEDG--INVDDCADVSHQV 58 + EQ + + + A ++V +E + + +R+ I+ +G ++++D + V Sbjct: 10 TKTEQAIIDALEAVAPQHDIDIVDVELVGATKAPCVRVRIEGAEGQSLSLNDVTANTKWV 69 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 V++ DPI+ +Y LEVSSPG+ RPL +ARFVGE L A + RRK+ G I Sbjct: 70 GDVIEELDPISSSYTLEVSSPGMARPLRRPSDFARFVGENCEL-TSTATEGRRKYAGKIA 128 Query: 119 AVDGEMITVTVE-GKDEVFALSNIQKANLVPHF 150 + +T+ +E G+ S+++K L P + Sbjct: 129 SATETSVTLELEDGESVTLDFSDVKKCKLKPTY 161 >UniRef50_A7HL08 Ribosome maturation factor rimP n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=RIMP_FERNB Length = 152 Score = 131 bits (330), Expect = 9e-30, Method: Composition-based stats. Identities = 47/152 (30%), Positives = 78/152 (51%), Gaps = 10/152 (6%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEF-IRGRTSTLRIYIDS-EDGINVDDCADVSHQVS 59 + +++ + V ++G EL +++ I+ L I ID +D ++ DC VS+++ Sbjct: 6 KEIIERVRAIAEPIVTSMGLELFDVKYRIQAGKWVLSIIIDKLDDYVSTRDCELVSYEIE 65 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 VLD D I Y LEVSSPGLDRPL E + RFVG+ V + + ++G I Sbjct: 66 KVLDSHDFIPGRYYLEVSSPGLDRPLKKIEDFRRFVGKLVKVKTKK------TYRGYIVD 119 Query: 120 VDGEM--ITVTVEGKDEVFALSNIQKANLVPH 149 V+ E I + V+ ++ +++ ANL Sbjct: 120 VNMETKEIILRVDNENITIKYDDVKSANLEIE 151 >UniRef50_B7IDT7 Ribosome maturation factor rimP n=1 Tax=Thermosipho africanus TCF52B RepID=RIMP_THEAB Length = 148 Score = 130 bits (328), Expect = 1e-29, Method: Composition-based stats. Identities = 46/152 (30%), Positives = 71/152 (46%), Gaps = 8/152 (5%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFI-RGRTSTLRIYIDSE-DGINVDDCADVSHQV 58 M + K+ E+ + + EL I++ + L I ID+ D ++ DC ++S +V Sbjct: 1 MKEIVSKVKEIAESACKKYNLELFDIKYYNKSGKWFLEIVIDNPLDYVSTKDCENISREV 60 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 LD D I Y L VSSPGLDRPL + + + RF+ +V + L G IK Sbjct: 61 EFQLDKLDIIPQRYYLTVSSPGLDRPLRSIDDFKRFINNKVKIKLEN-----ETIIGYIK 115 Query: 119 AVDGEMITVTVEGKD-EVFALSNIQKANLVPH 149 V +I + K + + I+KANL Sbjct: 116 DVKDSVIFLEENNKKIKEIKYNQIKKANLEID 147 >UniRef50_A8YVR1 Ribosome maturation factor rimP n=20 Tax=Lactobacillus RepID=RIMP_LACH4 Length = 158 Score = 130 bits (327), Expect = 2e-29, Method: Composition-based stats. Identities = 43/158 (27%), Positives = 80/158 (50%), Gaps = 8/158 (5%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGRT-STLRIYIDS-EDGINVDDCADVSHQV 58 MS + + ++ ++ G LV +E+++ + + LRIY+D +GI++D+ A +S V Sbjct: 1 MSKVVDLVRPVVETIIDEHGDMLVDMEYVKEKGQNYLRIYVDRQPNGIDIDEIAALSELV 60 Query: 59 SAVLDVEDP--ITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGV 116 S LD DP + Y LE+SSPG +RP+ T + R + + V + L + +++ ++G Sbjct: 61 SEKLDTIDPDPLPDPYVLELSSPGAERPIKTEADWKRALNDYVHIGLYQKIDDKKVYEGT 120 Query: 117 IKAVDGEMITVTVEGKDE----VFALSNIQKANLVPHF 150 +K + + I + V+ K I K F Sbjct: 121 LKYYNNDEIVLEVKDKTRRKKLTIPRKLIAKIRFAIEF 158 >UniRef50_C0W0C2 Protein of hypothetical function DUF150 n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W0C2_9ACTO Length = 168 Score = 129 bits (326), Expect = 2e-29, Method: Composition-based stats. Identities = 48/164 (29%), Positives = 80/164 (48%), Gaps = 19/164 (11%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG---INVDDCADVSHQV 58 + +E+K+ + + V+A G L ++ + +RI +D E+G ++ DD +VS ++ Sbjct: 4 TAIEEKVLDCVEPVVKAQGLFLEDVKVSERSETVVRIIVDLEEGTYLVSSDDLQEVSWKI 63 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 S LD DPI AY LE+S+PG +R L T HY R + V + L ++ + +G I+ Sbjct: 64 SEALDAADPIEQAYTLEISTPGAERKLHTPRHYRRSLNRLVEIKL----ADKSELRGFIR 119 Query: 119 AVDGEMITVTVE------------GKDEVFALSNIQKANLVPHF 150 V +T+ E GK + NI KA + F Sbjct: 120 EVGESELTLEEEAKAPKPGMKPKPGKLVTVSFENISKARVRVDF 163 >UniRef50_A8F3W0 Ribosome maturation factor rimP n=1 Tax=Thermotoga lettingae TMO RepID=RIMP_THELT Length = 152 Score = 129 bits (326), Expect = 2e-29, Method: Composition-based stats. Identities = 50/153 (32%), Positives = 75/153 (49%), Gaps = 7/153 (4%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGRTS-TLRIYID-SEDGINVDDCADVSHQV 58 + + KL ++ + LG EL I R R LR+ ID E+ +++ C VS Q+ Sbjct: 4 VKKIIDKLRPVVIDILSQLGLELFDITLRRERRKLVLRVVIDDPENYVSIRQCEIVSSQI 63 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 LD D I +Y LEVSSPGLDRPL + Y RFVG + L+ + + G IK Sbjct: 64 GNYLDEADLIDSSYILEVSSPGLDRPLREMKDYNRFVGRLAKIWLK----DGKVLVGNIK 119 Query: 119 AVDGEMITVTVE-GKDEVFALSNIQKANLVPHF 150 +++ ++ G+ F+ I+K L F Sbjct: 120 ETTENTVSIELKNGEIITFSFDQIKKGKLEIDF 152 >UniRef50_C4DMD6 Uncharacterized conserved protein n=4 Tax=Actinomycetales RepID=C4DMD6_9ACTO Length = 164 Score = 129 bits (325), Expect = 3e-29, Method: Composition-based stats. Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 11/151 (7%) Query: 6 QKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDV 64 +++ ++ + G++L ++ + GR + +R+ +D + G+++D A VS +S LD Sbjct: 9 KRILAVLEPVLAEAGYDLEELKVSQAGRRTLVRVLVDRDAGVDLDAIASVSRVLSKALDK 68 Query: 65 EDPITVA-----YNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 + Y LEVSSPG+DRPL H+ R VG V++ L A I A Sbjct: 69 SEADDGPFATNSYTLEVSSPGVDRPLTLPRHWRRNVGRLVSVRLSDAT-----VTARIHA 123 Query: 120 VDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 D E + + + A ++ + F Sbjct: 124 ADDENVELELSDGTRRVAYGDLGPGRVQLEF 154 >UniRef50_Q0AYJ1 Ribosome maturation factor rimP n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=RIMP_SYNWW Length = 139 Score = 128 bits (324), Expect = 4e-29, Method: Composition-based stats. Identities = 40/128 (31%), Positives = 64/128 (50%), Gaps = 3/128 (2%) Query: 24 VGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGLD 82 V IE+ + + LR++ID ++G+++D C+ + + D ++ I Y LEVSSPGLD Sbjct: 14 VNIEYRKENKEQFLRVFIDKDNGVDLDMCSQANRAIKESFDEQE-IPYDY-LEVSSPGLD 71 Query: 83 RPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTVEGKDEVFALSNIQ 142 R L + RF G V + R + ++ G++ D E I V +EG+ I Sbjct: 72 RVLKKERDWERFSGYRVRIKTRKSFPGPQRITGILLGFDSENIAVELEGELLKVPREMIT 131 Query: 143 KANLVPHF 150 L P F Sbjct: 132 IIRLHPEF 139 >UniRef50_A7BD83 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BD83_9ACTO Length = 156 Score = 128 bits (323), Expect = 5e-29, Method: Composition-based stats. Identities = 50/153 (32%), Positives = 72/153 (47%), Gaps = 8/153 (5%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRG-RTSTLRIYIDSE---DGINVDDCADVSHQ 57 ST E L E++ V G EL + R LR+ +++ GI+ D ADVS Sbjct: 4 STSEGPLEELLAPVVAQSGLELDSVIRSRSDAMPLLRVIVEAPIGAGGIDSDTLADVSRA 63 Query: 58 VSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI 117 VS LDV DPI Y LEVS+PG +R L H+ R +G V + LR G + Sbjct: 64 VSKALDVADPIDGEYLLEVSTPGAERELTKVGHWMRQIGRLVRIKLRA----GGYVSGRV 119 Query: 118 KAVDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 A + T+ V+G+ + +++KA F Sbjct: 120 VAANETSATIDVDGETTIIDYQDMRKARSRVDF 152 >UniRef50_C8PIF5 Putative uncharacterized protein n=1 Tax=Campylobacter gracilis RM3268 RepID=C8PIF5_9PROT Length = 139 Score = 128 bits (322), Expect = 6e-29, Method: Composition-based stats. Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 5/140 (3%) Query: 12 ITAPVEALGFELVGIEFIRGRTSTL-RIYIDSEDGINVDDCADVSHQVSAVLDVEDPITV 70 + A G +L +E + T+ RI I G+ +DDC +S +S + DVE P+ Sbjct: 4 LEALARECGVQLYDVETVSENGRTIYRISITKAGGVGLDDCERLSRLLSPIYDVEPPLEG 63 Query: 71 AYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTVE 130 + LEV SPGL+R L +H+A VGE V L + + +K G + +G ++ + + Sbjct: 64 EWTLEVGSPGLERKLSKPQHFANSVGELVRL----SCTDGQKLSGEVLDCEGGVLRLRTD 119 Query: 131 GKDEVFALSNIQKANLVPHF 150 G + L I+KA + Sbjct: 120 GGEVSVRLDEIKKARTYVQW 139 >UniRef50_A5CEN4 Ribosome maturation factor rimP n=2 Tax=Orientia tsutsugamushi RepID=RIMP_ORITB Length = 160 Score = 127 bits (320), Expect = 1e-28, Method: Composition-based stats. Identities = 51/148 (34%), Positives = 81/148 (54%), Gaps = 4/148 (2%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDS--EDGINVDDCADVSHQVSAV 61 L K+ E+IT + LG++++ + FI + + L+I ID E +NV DC S +SAV Sbjct: 2 LNDKIKELITPTAKTLGYKVINVSFIV-KPAILKIVIDRFDEKKVNVLDCQVFSKAISAV 60 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 LDVE+ I Y LEV S G++R L E + +F+G + + L A+ +K+ GVI + Sbjct: 61 LDVENIIPGKYFLEVESAGIERSLMDLEDFIKFLGYTIQVKLVAAINENKKYIGVISNIK 120 Query: 122 GEMITVTV-EGKDEVFALSNIQKANLVP 148 G+ IT+ + NI+ A +V Sbjct: 121 GQEITLNLQNDSTIAIDYDNIKVAKIVF 148 >UniRef50_B0VFB7 Putative uncharacterized protein n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VFB7_9BACT Length = 156 Score = 127 bits (319), Expect = 1e-28, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 2/149 (1%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIE-FIRGRTSTLRIYIDSEDGINVDDCADVSHQVS 59 M ++ E+ + + + IE + G+ + +Y+ G+ +D+CA S+ + Sbjct: 1 MEFYRAQVEEIARKICQEMHLAVYDIEEKMSGKGRIITVYLTKIGGVTLDECAAFSNALG 60 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 L++ D I Y LEVSSPGL+RPL HY + E+V + A + R+ G + Sbjct: 61 KELEIFDLIPERYFLEVSSPGLERPLKLKSHYVSAINEKVAVQ-FQAGEERKSIMGTLTE 119 Query: 120 VDGEMITVTVEGKDEVFALSNIQKANLVP 148 V+ + I + G +I +A V Sbjct: 120 VNQDTIVIDDRGSVTEIPFKSIIRAKTVF 148 >UniRef50_A1ZEG3 15 kDa protein n=3 Tax=Sphingobacteriales RepID=A1ZEG3_9SPHI Length = 152 Score = 127 bits (319), Expect = 2e-28, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 12/153 (7%) Query: 5 EQKLTEMITAPVEALGFELVGIEFIRGR-TSTLRIYIDSEDGINVDDCADVSHQVSAVLD 63 E+KLT +I +E + L+ + + + L + ID + G+++D CA +S + ++ Sbjct: 4 EEKLTTLIKEHLEPE-YFLIDVILKNQKPKAKLTVLIDGDQGVSIDRCATLSRWLGKYIE 62 Query: 64 VEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGE 123 E+ I AY LEVSSPG+D PL Y + +G +V + L GV++ V+ + Sbjct: 63 EENLIEGAYTLEVSSPGVDLPLKNQRQYIKNIGRKVKVSLNEGGNK----TGVLEKVEDK 118 Query: 124 MITVTVEG------KDEVFALSNIQKANLVPHF 150 +I + E + E I K ++ F Sbjct: 119 LIVIQPEKKGKIIPEKEEIPFDQIMKTKVMISF 151 >UniRef50_D0GIT1 Putative uncharacterized protein n=1 Tax=Leptotrichia goodfellowii F0264 RepID=D0GIT1_9FUSO Length = 178 Score = 126 bits (318), Expect = 2e-28, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 87/153 (56%), Gaps = 6/153 (3%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGIN-VDDCADVSHQV 58 + + K + I +++L EL +E+I+ G + LR+Y++ +DG +DDC ++S ++ Sbjct: 17 LEEILSKFEKEIQDSLDSLDLELSDLEYIQEGGYNYLRVYVEKKDGTTSLDDCIELSSKI 76 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 + D + I + LEVS+PG++R L + + RF GE++ L + ++ ++ ++G ++ Sbjct: 77 DGLAD--NLINEKFYLEVSTPGVERKLKKEKDFIRFSGEKIKLHSKSQIEGKKTFEGKLE 134 Query: 119 AVDGEMITVTVE--GKDEVFALSNIQKANLVPH 149 + + I + + GK LS ++KANL+ Sbjct: 135 KFENDTIFLNDQNIGKTVEIPLSKLKKANLIYE 167 >UniRef50_C1F695 Ribosome maturation factor rimP n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=RIMP_ACIC5 Length = 201 Score = 126 bits (318), Expect = 2e-28, Method: Composition-based stats. Identities = 50/200 (25%), Positives = 77/200 (38%), Gaps = 51/200 (25%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRG-RTSTLRIYIDSE---------------- 43 M+ + + G ++V +E+ G + LRI+I+ Sbjct: 1 MAFDLDTIRSAAQRVASSHGLDVVDVEYQGGAKHRMLRIFIEKNAEERAKLAAQSSGRVE 60 Query: 44 ------------------DGINVDDCADVSHQVSAVLDVEDPITVA--YNLEVSSPGLDR 83 G+ +DC+ S +LDVE+ + A Y LEVSSPGLDR Sbjct: 61 TIEVHEEMPREGMNPEHFSGVTHEDCSAFSTDFGTLLDVEELMPGASEYTLEVSSPGLDR 120 Query: 84 PLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTV-------------- 129 L + Y RF G V L V R WQG + +DG+ + + + Sbjct: 121 KLQSRADYERFAGSLVKLSTFEPVNGNRHWQGRMAGLDGDTLRLDLTAMKQKGKGKEKKS 180 Query: 130 EGKDEVFALSNIQKANLVPH 149 + AL N++KA L+P Sbjct: 181 AAETVEIALGNVEKAQLIPE 200 >UniRef50_D0MI89 Putative uncharacterized protein n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MI89_RHOM4 Length = 160 Score = 125 bits (316), Expect = 4e-28, Method: Composition-based stats. Identities = 40/149 (26%), Positives = 73/149 (48%), Gaps = 5/149 (3%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIRGRTS--TLRIYIDSEDGINVDDCADVSHQVSA 60 L +++ + ++ F L+ + +RGR + I+ID + G ++ D +S ++ Sbjct: 10 ALIEQIRARVEEVLQGTTFFLIDV-VVRGRRGAHVVEIFIDGDRGPSLRDLEQLSREIGF 68 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVL-RMAVQNRRKWQGVIKA 119 +LD +D + Y L VSSPG+DRPL Y + VG E+ + L +A + +G ++ Sbjct: 69 LLDSDDLLPGPYTLNVSSPGVDRPLVHPRQYPKHVGRELEVKLVAVADAPAERLRGTLQR 128 Query: 120 VDGEMITVTV-EGKDEVFALSNIQKANLV 147 D E I + + +G IQ A + Sbjct: 129 ADAEAIELRLPDGSQRRLRYEEIQSARVC 157 >UniRef50_C5RBB8 Putative uncharacterized protein n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RBB8_WEIPA Length = 235 Score = 125 bits (315), Expect = 4e-28, Method: Composition-based stats. Identities = 46/154 (29%), Positives = 79/154 (51%), Gaps = 8/154 (5%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGRTS-TLRIYIDSEDG-INVDDCADVSHQV 58 M+ + + + ++ + GF+L + + + + LR+ +D DG IN+DD ++ + Sbjct: 8 MAKVTENVQAILKPILAKKGFDLWDVLYEKQDSDFVLRVLVDRVDGEINMDDLVMLTEVI 67 Query: 59 SAVLDVE--DPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGV 116 S LD+ DP AY L+VSSPG DR L ++ VG+ + ++L V K+ G Sbjct: 68 SDELDMITPDPFPQAYLLDVSSPGADRELQQPGNFVWAVGKFIEVILNNPVAGLEKFTGQ 127 Query: 117 IKAVDGEMITVTVEGKDE----VFALSNIQKANL 146 + + + +T+ V K + L NIQKANL Sbjct: 128 LVSFLDDKLTIDVALKTKHQLIEIDLDNIQKANL 161 Score = 48.9 bits (116), Expect = 4e-05, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 1/70 (1%) Query: 82 DRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTVE-GKDEVFALSN 140 DR L T E Y + V + + R+++ G + E + +T E + + Sbjct: 166 DRILTTEEDYEWARHKLVHISTYQKINGRKEFLGELNNFTPEDLIITDESNDELLIPRRA 225 Query: 141 IQKANLVPHF 150 + +A F Sbjct: 226 VAQARQSNDF 235 >UniRef50_C1B310 Ribosome maturation factor rimP n=3 Tax=Nocardiaceae RepID=RIMP_RHOOB Length = 190 Score = 125 bits (315), Expect = 5e-28, Method: Composition-based stats. Identities = 49/152 (32%), Positives = 83/152 (54%), Gaps = 11/152 (7%) Query: 5 EQKLTEMITAPVEALGFELVGIEFI-RGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLD 63 ++++TE+I+ V+ G+++ + G+ S +RI +DS+ G+ +D A++SH++S V D Sbjct: 6 KERVTELISDLVQRQGYDVEDVAVTLAGKHSAVRIMVDSDAGLELDAVANLSHEISEVFD 65 Query: 64 -VEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 V D Y LEV+SPG+DRPL H+ R G + + L G I A+DG Sbjct: 66 SVSDFGESPYTLEVTSPGIDRPLTHERHWRRARGRKARIDLA-----HETVVGRIGALDG 120 Query: 123 EMITVTVEGKD----EVFALSNIQKANLVPHF 150 + + V + + AL++IQKA + F Sbjct: 121 DSVAVVIGSRTGPDVRRIALADIQKAVVQVEF 152 >UniRef50_C6XFV9 Putative uncharacterized protein n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XFV9_LIBAP Length = 192 Score = 125 bits (314), Expect = 6e-28, Method: Composition-based stats. Identities = 40/154 (25%), Positives = 75/154 (48%), Gaps = 9/154 (5%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVL 62 L ++ +I +E + F V I + + L+I+++ +DG + + DC ++S +S +L Sbjct: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 Query: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 DVE+ I Y LEVSSPG+DRP+ + R+ G V + ++ +++K G I Sbjct: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 Query: 123 EMITVTVEGKDEV--------FALSNIQKANLVP 148 + E + E + ++ A L+ Sbjct: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 >UniRef50_A6GNL5 Putative uncharacterized protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GNL5_9BURK Length = 171 Score = 123 bits (311), Expect = 1e-27, Method: Composition-based stats. Identities = 51/145 (35%), Positives = 84/145 (57%), Gaps = 11/145 (7%) Query: 12 ITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPITVA 71 A + +LG E+ IE R LRI IDS G+ V+DC VSHQ++ + VE+ Sbjct: 28 ADAVISSLGLEVADIE--REGNGLLRIMIDSPTGVTVEDCEKVSHQLTHLFTVENVNYE- 84 Query: 72 YNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGE--MITVTV 129 LE+SSPG+DR L + + RF+ +EV+L + A+ N+++++GV++ + + VT Sbjct: 85 -RLEISSPGVDRVLRRKKDFERFLDQEVSLKFKRAINNQKQFKGVLQKGKEQAWGVLVTP 143 Query: 130 EGKDEV-----FALSNIQKANLVPH 149 +GK+ F ++++ A LVPH Sbjct: 144 DGKNAEPYLLDFEITDLAGARLVPH 168 >UniRef50_Q2JX22 Ribosome maturation factor rimP n=30 Tax=Cyanobacteria RepID=RIMP_SYNJA Length = 157 Score = 123 bits (311), Expect = 1e-27, Method: Composition-based stats. Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 4/148 (2%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIRGR-TSTLRIYI---DSEDGINVDDCADVSHQV 58 L +L + LG+ELV + F + LR+ I D E + DC +S + Sbjct: 4 PLIPQLESLARPLAARLGYELVQMVFHTNQYPPVLRVDIRPLDPEQETSHADCEAMSQAL 63 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 LD D I Y LEVSSPG+ L + + F G V + + + + W G + Sbjct: 64 EVELDRVDLIPGHYVLEVSSPGISNLLISDRDFVVFKGFAVEVTVDPPYKGKAVWSGHLL 123 Query: 119 AVDGEMITVTVEGKDEVFALSNIQKANL 146 D E + ++++G+ +++Q+ L Sbjct: 124 GRDEEKVALSLKGRRVQLPRASVQRVVL 151 >UniRef50_Q1J5B0 Ribosome maturation factor rimP n=71 Tax=Streptococcaceae RepID=RIMP_STRPF Length = 178 Score = 123 bits (310), Expect = 1e-27, Method: Composition-based stats. Identities = 49/156 (31%), Positives = 82/156 (52%), Gaps = 8/156 (5%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVS 59 ++++ +T+ +T ++A +ELV +E+ + G L I +D E GI V+D +D+++ +S Sbjct: 23 ITSIIDIVTKTVTPEIKA-PYELVDVEYDKMGSDYILSILVDKEGGITVEDTSDLTNIIS 81 Query: 60 AVLDVEDP--ITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI 117 +LD DP Y LEVSSPGL+RPL TA+ VG + + L A+ + +QG + Sbjct: 82 PLLDTIDPDPFPNQYMLEVSSPGLERPLKTADSLKAAVGSYINVSLYQAIDKVKVFQGDL 141 Query: 118 KAVDGEMITVTVEGKD----EVFALSNIQKANLVPH 149 A DGE +T+ K + K + Sbjct: 142 LAFDGETLTIDYLDKTRHKIVNIPYQAVAKVRMAVK 177 >UniRef50_Q9ZM44 Ribosome maturation factor rimP n=14 Tax=Helicobacter RepID=RIMP_HELPJ Length = 146 Score = 123 bits (310), Expect = 2e-27, Method: Composition-based stats. Identities = 42/150 (28%), Positives = 77/150 (51%), Gaps = 7/150 (4%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDG-INVDDCADVSHQVSAV 61 + +K+ E I +E+LG+ L + ++ LR+ + + +G +++D C VS +S + Sbjct: 1 MTKKIEEKIEGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL 60 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 LDV D I AY LEVSS GL+R L T +H+ +GE+V + L N+ +Q V+K + Sbjct: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLI----NKESFQAVLKDAN 116 Query: 122 GEMITVTVEGKDEV-FALSNIQKANLVPHF 150 ++ +++K + + Sbjct: 117 DLSADFELDNHAIKSVEYKDLKKVKTLFEW 146 >UniRef50_C3RL59 Putative uncharacterized protein n=4 Tax=Bacteria RepID=C3RL59_9MOLU Length = 167 Score = 123 bits (310), Expect = 2e-27, Method: Composition-based stats. Identities = 46/154 (29%), Positives = 70/154 (45%), Gaps = 6/154 (3%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIRGRT-STLRIYIDSEDG-INVDDCADVSHQVSA 60 L + +I +E L IE+++ LRI+++ +G +++D C VS +S Sbjct: 14 ELLDTIKTLIKPILENNDVYLDDIEYLQENGEWYLRIFVEKNEGSLDMDTCVAVSEAISL 73 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 +D EDPI Y LEVSSPG+++PL T E VG+ V + +G IK + Sbjct: 74 KMDEEDPIKGEYYLEVSSPGVEKPLKTFEQVKASVGKYVYAKFINPTAGMDEVEGFIKTI 133 Query: 121 DGEMITVTV----EGKDEVFALSNIQKANLVPHF 150 + E I K SNI+ L F Sbjct: 134 EDETIEFEYLVKNIKKRIKIDYSNIKFIRLAVKF 167 >UniRef50_C3XJ54 Putative uncharacterized protein n=1 Tax=Helicobacter bilis ATCC 43879 RepID=C3XJ54_9HELI Length = 167 Score = 123 bits (310), Expect = 2e-27, Method: Composition-based stats. Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 22/165 (13%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIRGRTS-TLRIYIDSEDGINVDDCADVSHQVSAVL 62 + Q L + I + + G EL IE ++ S LRI I ++GI++DDC ++S ++ +L Sbjct: 2 ITQDLHDKIESLITQKGLELYDIELLKENESMILRISIFKKEGISLDDCENISTLIAPLL 61 Query: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 DVE AY+LEVSSPG++R L +H+ +G++V + + N+ G++++ + Sbjct: 62 DVELSDLEAYHLEVSSPGVERNLKKPKHFLCSIGQKVAVTM----SNKTIINGILESYNT 117 Query: 123 EMITVTV-----------------EGKDEVFALSNIQKANLVPHF 150 + IT+ E K + L+ +K + + Sbjct: 118 DEITIKEILKPTKKKQNNLKESSQEVKTHIIKLNETKKVKTIFDW 162 >UniRef50_A0RQZ2 Ribosome maturation factor rimP n=2 Tax=Epsilonproteobacteria RepID=RIMP_CAMFF Length = 140 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 38/141 (26%), Positives = 71/141 (50%), Gaps = 6/141 (4%) Query: 12 ITAPVEALGFELVGIEFIRGRTSTL-RIYIDSEDGINVDDCADVSHQVSAVLDVEDPITV 70 ++ V G +L E + + R+YI G+++++C VS +S + DV P++ Sbjct: 4 LSNLVSQCGVDLYDAEVVNENGRVIYRVYITKNGGVSLEECEAVSKLLSPIYDVMPPVSG 63 Query: 71 AYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTVE 130 + LEVSSPGL+R L EH+ +GE ++L ++ + +G I +V + I + ++ Sbjct: 64 EWILEVSSPGLERKLSKIEHFTLSIGEFAKIIL----NDKTEIKGKIVSVKDDNICINIK 119 Query: 131 GKD-EVFALSNIQKANLVPHF 150 + NI+KA + Sbjct: 120 NNESIEVKFENIKKAKTYMEW 140 >UniRef50_A0LV30 Ribosome maturation factor rimP n=1 Tax=Acidothermus cellulolyticus 11B RepID=RIMP_ACIC1 Length = 170 Score = 122 bits (307), Expect = 3e-27, Method: Composition-based stats. Identities = 47/167 (28%), Positives = 77/167 (46%), Gaps = 22/167 (13%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTST-LRIYIDSEDGINVDDCADVSHQVSA 60 ST Q+L E++ V G +L G+ + RTS LRI +D + G+ +D+ A S +S Sbjct: 4 STGAQRLAELLAPVVAGQGLDLEGVTLLDHRTSAHLRIVVDKDGGVQLDEIAAASQAISH 63 Query: 61 VLD---VEDPI--TVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQG 115 LD D I +Y LEVSSPG+DRPL H+ R +G V + L Sbjct: 64 FLDNDAEADAIIGPRSYTLEVSSPGIDRPLVEPRHWRRAIGRLVRVQLPDLGP----VVA 119 Query: 116 VIKAVDGEMITVTVE------------GKDEVFALSNIQKANLVPHF 150 ++ V G+ + + +E ++ A++ ++ + F Sbjct: 120 RVQDVTGDQVRLGIEWQYTDDGACVRQYEERTVAIAEVRPGQIEVEF 166 >UniRef50_P59821 Ribosome maturation factor rimP n=2 Tax=Helicobacter RepID=RIMP_HELHP Length = 157 Score = 121 bits (305), Expect = 7e-27, Method: Composition-based stats. Identities = 46/159 (28%), Positives = 79/159 (49%), Gaps = 17/159 (10%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIRG-RTSTLRIYI---------DSEDG--INVDDC 51 L Q I LG + I+F + LR+ I D ++G +++ DC Sbjct: 2 LSQHTQARIEQLAATLGLYIYDIDFFKEDNRPILRVSITRKAPMQKQDCKNGLAVSLQDC 61 Query: 52 ADVSHQVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRR 111 +VS +S +LDVED YNLEVSSPGL+R L +HY +GE+V++ L ++ Sbjct: 62 QNVSELISPLLDVEDENLKDYNLEVSSPGLERVLKKPQHYIYSLGEKVSIKL----MDKS 117 Query: 112 KWQGVIKAVDGE-MITVTVEGKDEVFALSNIQKANLVPH 149 +G++ V+ I++ + F+ ++++K +V Sbjct: 118 VIEGILHDVNENVSISIDTGKEILSFSFADMKKIKVVFE 156 >UniRef50_C0ZYA2 Ribosome maturation factor rimP n=2 Tax=Rhodococcus erythropolis RepID=RIMP_RHOE4 Length = 206 Score = 120 bits (303), Expect = 1e-26, Method: Composition-based stats. Identities = 45/151 (29%), Positives = 77/151 (50%), Gaps = 11/151 (7%) Query: 6 QKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDV 64 +++ E+I+ V A G+++ + G+ S +RI +DS+ GI +D A++S VS + D Sbjct: 7 ERVIELISELVHAQGYDVEDVVVTSAGKHSAVRIMVDSDAGIELDAAAEISRLVSELFDS 66 Query: 65 EDPITV-AYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGE 123 + I Y LEV+SPG+DRPL H+ R G + + L G I ++ + Sbjct: 67 LEEIGETPYTLEVTSPGIDRPLTLERHWRRARGRKARIDLA-----GETVVGRIGTLNDD 121 Query: 124 MITVTVEGKD----EVFALSNIQKANLVPHF 150 + V + G+ AL ++QKA + F Sbjct: 122 SVAVVIGGRGGLTVREIALGDVQKAVVQVEF 152 >UniRef50_D1VB72 Putative uncharacterized protein n=1 Tax=Frankia sp. EuI1c RepID=D1VB72_9ACTO Length = 277 Score = 120 bits (303), Expect = 1e-26, Method: Composition-based stats. Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 18/158 (11%) Query: 7 KLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVE 65 ++ + + + GF+L + R G S LR+ +D +DGI++D AD S +S +LD Sbjct: 23 EIRDRLAEALARAGFDLDDLSLSRAGSRSVLRVAVDRDDGIDLDAVADASRLISDLLDQV 82 Query: 66 DP--ITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGE 123 D + AY LEV+SPG+DRPL H+ R G V + G + D E Sbjct: 83 DEGGLAGAYVLEVTSPGVDRPLTEPRHWRRARGRLVEAR----RVDGTVVLGRVLGADDE 138 Query: 124 MITVT-----------VEGKDEVFALSNIQKANLVPHF 150 + + V+ K E +++ +A + F Sbjct: 139 GVDLAVAAGPVRRGRPVKTKIERLRFADVARAVVQIEF 176 >UniRef50_A5ZWL4 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZWL4_9FIRM Length = 129 Score = 120 bits (303), Expect = 1e-26, Method: Composition-based stats. Identities = 39/88 (44%), Positives = 49/88 (55%), Gaps = 1/88 (1%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIRG-RTSTLRIYIDSEDGINVDDCADVSHQVSAV 61 EQK ++ VE GFELV +E+++ LR YID GI V+DC VS S Sbjct: 33 EYEQKAEALLAPIVEGQGFELVDVEYVKEAGNWYLRGYIDKPGGITVNDCEAVSRAFSDK 92 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAE 89 LD D I +Y +E+SSPGLDRPL Sbjct: 93 LDENDFIEDSYIMEISSPGLDRPLKRRR 120 >UniRef50_A0JUT7 Ribosome maturation factor rimP n=3 Tax=Arthrobacter RepID=RIMP_ARTS2 Length = 205 Score = 120 bits (302), Expect = 1e-26, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 70/162 (43%), Gaps = 21/162 (12%) Query: 6 QKLTEMITAPVEALGFELVGIEF-IRGRTSTLRIYIDSE----DGINVDDCADVSHQVSA 60 +++ ++ V+A L + + G + + +D G+++D A++S ++S Sbjct: 29 ERVRALLEPSVQAHRLYLEDVSIHVAGANRVVHVVVDLPQEETGGVSLDVIAEISKELSG 88 Query: 61 VLDVEDPITV-AYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 +LD + Y+LEVSSPG+ RPL H+ R G V + + G I++ Sbjct: 89 ILDGDPSYDSRPYDLEVSSPGVGRPLTEPRHWHRARGRMVKVNVIQ----GENLTGRIQS 144 Query: 120 VDGEMITVTVE-----------GKDEVFALSNIQKANLVPHF 150 VD + +T+ E G+ E I+ + F Sbjct: 145 VDDDGVTLVPEIAAKKGMKPKQGEPEKIPFDRIRNGKVEIEF 186 >UniRef50_A8EYF2 Ribosome maturation factor rimP n=1 Tax=Rickettsia canadensis str. McKiel RepID=RIMP_RICCK Length = 125 Score = 120 bits (302), Expect = 2e-26, Method: Composition-based stats. Identities = 48/124 (38%), Positives = 77/124 (62%), Gaps = 2/124 (1%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDS--EDGINVDDCADVSHQV 58 M T+EQ++T +I + +GFELV ++F + + I IDS + ++V+DC VS + Sbjct: 1 MQTIEQQITNVIEESLIDMGFELVLVKFKGVNSKVVEILIDSLNSEKVSVEDCTKVSRTI 60 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 A+LDVE+ I A +LEV+S GL+RPL E+Y RF+G EV + L+ + ++ +QG I Sbjct: 61 PAILDVENLIEDASSLEVASSGLERPLVKFENYNRFLGREVKITLKELLNDKTSYQGKII 120 Query: 119 AVDG 122 + Sbjct: 121 KAEN 124 >UniRef50_A4FM36 Ribosome maturation factor rimP n=4 Tax=Actinomycetales RepID=RIMP_SACEN Length = 185 Score = 119 bits (300), Expect = 2e-26, Method: Composition-based stats. Identities = 41/150 (27%), Positives = 77/150 (51%), Gaps = 6/150 (4%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAV 61 + +L ++ V A GF+L ++ + GR +++ +D+E+G+ +D+ +++S VS V Sbjct: 8 EVAARLEPVVAEAVSAAGFDLEELDVQQAGRRRLVKVVVDAEEGVGLDEISEISRAVSKV 67 Query: 62 LDV-EDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 LD E + +Y LEV+SPG+DRPL H+ R V + L + + Sbjct: 68 LDAHEHVLAGSYTLEVTSPGVDRPLTRPRHWRRARYRLVRVRL----ADGSDLVVRVGEA 123 Query: 121 DGEMITVTVEGKDEVFALSNIQKANLVPHF 150 D E + V +G+ A ++++A + F Sbjct: 124 DDEGVVVLADGEIRTLAYRDVERAVVEVEF 153 >UniRef50_A9ITY3 Ribosome maturation factor rimP n=11 Tax=Burkholderiales RepID=RIMP_BORPD Length = 163 Score = 119 bits (299), Expect = 3e-26, Method: Composition-based stats. Identities = 47/156 (30%), Positives = 73/156 (46%), Gaps = 20/156 (12%) Query: 8 LTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDP 67 L + + + ELV +E R LR+ ID G+ ++DC VS Q+S V +VE+ Sbjct: 4 LYALTQQALAGMDVELVDVE--RAALGLLRVTIDKAGGVRIEDCEQVSRQLSRVYEVENI 61 Query: 68 ITVAY-NLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMIT 126 Y LEV SPG+DRPL T RF GE + + LR + R+ + G++ A + Sbjct: 62 ---DYKRLEVGSPGVDRPLRTEAELRRFAGERIEIKLRQPLDGRKVFSGILSAPANDGAA 118 Query: 127 ---------VTVEGKDEVF-----ALSNIQKANLVP 148 + E K + L ++++A L P Sbjct: 119 ADAQPAVFGLEFEAKKDDIQVLNFTLGDVERAKLDP 154 >UniRef50_B1XY65 Ribosome maturation factor rimP n=57 Tax=Burkholderiales RepID=RIMP_LEPCP Length = 183 Score = 118 bits (298), Expect = 4e-26, Method: Composition-based stats. Identities = 48/156 (30%), Positives = 77/156 (49%), Gaps = 21/156 (13%) Query: 10 EMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG----------INVDDCADVSHQVS 59 + + V +G+ELV E R L +YID G + V+DC V+ Q+ Sbjct: 5 QAVETTVTGMGYELVECE--RSARGLLCVYIDRVPGSVYLTGPGEFVLVEDCELVTRQLR 62 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 + +VE+ LEVSSPGLDRPL + RF+G +V + L+ Q R+ ++G+++ Sbjct: 63 YLFEVENV--DYSRLEVSSPGLDRPLRKVGDFLRFLGSDVDVTLKAPFQGRKNYRGLLRQ 120 Query: 120 VDGE-----MITVTVEGKDEV--FALSNIQKANLVP 148 + +D+V FAL +++A LVP Sbjct: 121 AGDTPEQGFELVFQDGKEDKVLGFALDEVREARLVP 156 >UniRef50_A9BH33 Ribosome maturation factor rimP n=1 Tax=Petrotoga mobilis SJ95 RepID=RIMP_PETMO Length = 157 Score = 118 bits (298), Expect = 4e-26, Method: Composition-based stats. Identities = 45/152 (29%), Positives = 63/152 (41%), Gaps = 4/152 (2%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDG-INVDDCADVSHQVS 59 ++Q + E LG E+ I + L + ID DG +++ DC S Sbjct: 5 KEIKQLIWEKADNVASKLGLEIFDILIKGSNKNKILEVVIDKADGYVSIGDCERFSKAFD 64 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 LD D +Y L VSSPGLDR L Y RF G+ +L+ G I Sbjct: 65 PWLDEIDLFDKSYELVVSSPGLDRKLRGKADYERFKGKLAKFILKGKETKHPVVIGYIDE 124 Query: 120 VDGEMITVTVE--GKDEVFALSNIQKANLVPH 149 + + I +T + GK L+ I KANL Sbjct: 125 ILEDQIKITEKDSGKLFNIDLNEIDKANLEIE 156 >UniRef50_Q6A7M3 Ribosome maturation factor rimP n=2 Tax=Propionibacterium acnes RepID=RIMP_PROAC Length = 178 Score = 117 bits (295), Expect = 9e-26, Method: Composition-based stats. Identities = 41/162 (25%), Positives = 74/162 (45%), Gaps = 18/162 (11%) Query: 6 QKLTEMITAPVEALGFELVGIEFI-RGRTSTLRIYIDSED----GINVDDCADVSHQVSA 60 ++LT ++ V +G EL ++ + GR +R+ ID + G ++D+ ++ + ++S Sbjct: 4 ERLTRLLEPVVSQVGLELDRVDVVPAGRRRLVRVTIDGDGPDGHGPSLDEISEATAEISH 63 Query: 61 VLDVEDPI-TVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNR--RKWQGVI 117 LD + Y LEVSS G+ PL HY R +G V L A + + + G I Sbjct: 64 CLDDSGAMGESPYTLEVSSRGVSTPLTQPRHYRRNIGHLVRFTLNPAEEQKSGETFDGRI 123 Query: 118 KAVDGEMITVTVEGK----------DEVFALSNIQKANLVPH 149 E++T+ VE + L+++ KA + Sbjct: 124 AEAGEEVVTLEVEAENSKPHKPVYTTREVQLADVAKAVVQVE 165 >UniRef50_Q2S1N5 Ribosome maturation factor rimP n=1 Tax=Salinibacter ruber DSM 13855 RepID=RIMP_SALRD Length = 155 Score = 117 bits (295), Expect = 9e-26, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 3/147 (2%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRT-STLRIYIDSEDGINVDDCADVSHQVSA 60 L +++ + + + LV +E + + +YIDSE+ + DD A +S ++ Sbjct: 6 QHLADRVSGLTEEVIVGTDYFLVDVEVRGHKGTRVVEVYIDSEEEVGHDDLALISKEIGF 65 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 +LDVED + +Y LE+SSPG+ RPL Y + VG + + + + G + Sbjct: 66 LLDVEDVVDGSYKLELSSPGIKRPLTMPAQYRKNVGRTLRVR-FESDGDEEIVVGDLTDA 124 Query: 121 DGEMITVTVE-GKDEVFALSNIQKANL 146 D E I + + + + I +A + Sbjct: 125 DDEEIELELPSAERLQLPYTTITQARI 151 >UniRef50_C9Z253 Putative uncharacterized protein n=4 Tax=Streptomyces RepID=C9Z253_STRSW Length = 169 Score = 117 bits (295), Expect = 1e-25, Method: Composition-based stats. Identities = 51/159 (32%), Positives = 74/159 (46%), Gaps = 13/159 (8%) Query: 1 MSTLE-QKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQV 58 MST + ++L E++ V + G +L I GR LR+ +DS++G ++D ADVS + Sbjct: 1 MSTTQSERLRELLEPLVRSQGLDLEEIAVDSVGRKRVLRVVVDSDEGADLDAVADVSRAL 60 Query: 59 SAVLDVEDPITVA-YNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI 117 SA LD D + + Y LEV +PG +R L HY R V V LR + I Sbjct: 61 SAKLDETDAMGQSEYTLEVGTPGAERALTEHRHYRRAVDRLVKFTLREDGE----LIARI 116 Query: 118 KAVDGEMITVTVEGKD------EVFALSNIQKANLVPHF 150 VD E + + V G A I +A + F Sbjct: 117 LTVDDEGLDLEVPGVKGRRATSRRLAFDEIDRARVQVEF 155 >UniRef50_B7CAI1 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAI1_9FIRM Length = 173 Score = 117 bits (293), Expect = 2e-25, Method: Composition-based stats. Identities = 42/143 (29%), Positives = 66/143 (46%), Gaps = 6/143 (4%) Query: 6 QKLTEMITAPVEALGFELVGIEFIRGRT-STLRIYIDSEDG-INVDDCADVSHQVSAVLD 63 L E I + G L +E+I + LR+ ++ EDG +++D CA S + +LD Sbjct: 23 DNLKEWIEEVLNENGCHLYDLEWITNQGTPLLRVSVEKEDGTMDLDTCASCSDVIGQMLD 82 Query: 64 VEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGE 123 +D + Y LEV SPG +R L T E R VG+ V + ++ Q + G + Sbjct: 83 EKDWYSHEYMLEVCSPGAERELRTDEEVQRAVGKYVFVKMKDPKQGLDQVIGDLVEATEN 142 Query: 124 MITVTVEGKD----EVFALSNIQ 142 +T++ K SNIQ Sbjct: 143 DVTISYRDKTRTKKITIEKSNIQ 165 >UniRef50_Q1IZ05 Ribosome maturation factor rimP n=4 Tax=Deinococci RepID=RIMP_DEIGD Length = 155 Score = 116 bits (292), Expect = 2e-25, Method: Composition-based stats. Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 8/134 (5%) Query: 8 LTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDS--EDGINVDDCADVSHQVSAVLDV 64 L + ++ LG+E++ ++ GR + I +D E + V+D S V A D Sbjct: 12 LRTLAEGVLQPLGYEVLDVQVQNPGRRPIVVIRMDRLDEQPVTVEDLETASRAVGAEFDR 71 Query: 65 EDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEM 124 DPI Y LE+ SPG RPL A HY R +G + + + + IKAVDGE Sbjct: 72 VDPIAGEYRLELESPGAKRPLTRARHYERMLGLKARVR-----GDGHSFTAPIKAVDGEQ 126 Query: 125 ITVTVEGKDEVFAL 138 +T V G+D + Sbjct: 127 VTFDVGGEDVTLTV 140 >UniRef50_C7I1W8 Putative uncharacterized protein n=1 Tax=Thiomonas intermedia K12 RepID=C7I1W8_THIIN Length = 191 Score = 116 bits (292), Expect = 2e-25, Method: Composition-based stats. Identities = 48/117 (41%), Positives = 68/117 (58%), Gaps = 6/117 (5%) Query: 9 TEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG--INVDDCADVSHQVSAVLDVED 66 + I V +LG ELV +E + LR+ ID DG + V+DC V+ Q+ V +VE+ Sbjct: 4 AQAIDTAVTSLGLELVEVEHL--PRGLLRVTIDHADGAPVTVEDCERVTRQLQYVFEVEN 61 Query: 67 PITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGE 123 LEVSSPGLDRPL AE + RF G E+ +VLR+ Q R+K++GV+ + Sbjct: 62 VDYG--RLEVSSPGLDRPLRKAEDFVRFAGLEIDVVLRVPFQGRKKYRGVLLERSQD 116 >UniRef50_Q1AW57 Ribosome maturation factor rimP n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=RIMP_RUBXD Length = 152 Score = 116 bits (292), Expect = 2e-25, Method: Composition-based stats. Identities = 42/144 (29%), Positives = 73/144 (50%), Gaps = 9/144 (6%) Query: 6 QKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDV 64 +L+E + + G ELV F RG L + +D E G ++ + CA + V+ L+ Sbjct: 9 DRLSEAVERAL-PEGTELVEARFSRG--PLLTLLVDREGGPVDHEFCARIISIVAPALEE 65 Query: 65 EDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEM 124 E + +EVSSPG++RPL H+ RF+G V + + V RR + GVI+ V Sbjct: 66 E---GYSGMIEVSSPGIERPLTRPSHFRRFIGRRVRVRVGEPVDGRRNFTGVIERVADAG 122 Query: 125 ITVTV--EGKDEVFALSNIQKANL 146 + + +G++ ++ +A+L Sbjct: 123 FVLRLSEDGEEVELPFGSVTRAHL 146 >UniRef50_B9Y7V3 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y7V3_9FIRM Length = 156 Score = 116 bits (291), Expect = 2e-25, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 76/151 (50%), Gaps = 7/151 (4%) Query: 6 QKLTEMITAPVEALGFELVGIEFIRGRTS-TLRIYIDSEDG-INVDDCADVSHQVSAVLD 63 + + +I +++LG +L ++++ + S L+I + DG +++D CA VS ++S LD Sbjct: 5 ENIKTLILPVLDSLGIQLYDLKWVNEKKSRILQIAVMRADGSMDIDTCALVSEKISEALD 64 Query: 64 V-EDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 +D I+ Y LEV SPG +R L A +G+ V + L+ V++ + G + ++ Sbjct: 65 AHDDWISFEYFLEVCSPGAERELRNAGEIRGALGKHVCVRLKSPVKSMMEITGDLLEMNE 124 Query: 123 EMITVTVEGKDEV----FALSNIQKANLVPH 149 +T++ K L I+K L Sbjct: 125 TTLTLSYRDKAVTRKAQVELDQIEKIRLAVK 155 >UniRef50_A4SY80 Ribosome maturation factor rimP n=2 Tax=Polynucleobacter necessarius RepID=RIMP_POLSQ Length = 163 Score = 115 bits (289), Expect = 4e-25, Method: Composition-based stats. Identities = 60/155 (38%), Positives = 85/155 (54%), Gaps = 21/155 (13%) Query: 10 EMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG---INVDDCADVSHQVSAVLDVED 66 ++I A +E LG+ LV IE R LR+ I++ D I+V DC VSHQ+S L VE+ Sbjct: 5 QIIAAELENLGYTLVEIE--REAGGLLRVTIENPDYERLISVLDCEKVSHQLSYALPVEN 62 Query: 67 PITVAY-NLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV----- 120 Y LE+SSPGLDRP+ +A + RF G EV L LR+A NR+ ++GV++ + Sbjct: 63 I---PYERLEISSPGLDRPVKSAADFERFTGMEVDLKLRVAAGNRKNFRGVLQGLLSGEL 119 Query: 121 --DGEMITVTVEGKD-----EVFALSNIQKANLVP 148 + EG D F+L+ + K LVP Sbjct: 120 NSPDAKFGLLFEGADGAESQLEFSLAEVDKTRLVP 154 >UniRef50_D1B5D8 Putative uncharacterized protein n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B5D8_THEAS Length = 150 Score = 115 bits (289), Expect = 5e-25, Method: Composition-based stats. Identities = 44/144 (30%), Positives = 69/144 (47%), Gaps = 9/144 (6%) Query: 9 TEMITAPVEALGFELVGIEFIRG-RTSTLRIYIDSED-GINVDDCADVSHQVSAVLDVED 66 + I VE LG+ V ++ +R +R+ IDS D I DC VS +V +LD E Sbjct: 10 KDRIRRLVEDLGYICVEVKLVRDLGGQVVRVTIDSPDAPIGHGDCEAVSRKVGELLDGEG 69 Query: 67 --PITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV-DGE 123 + Y LEVSSPG +RPL + + + RF G ++ + +K I V D Sbjct: 70 EGFLKGRYYLEVSSPGPNRPLLSLDDFRRFKGSKIRVST----GKGKKRTYFIDDVFDDG 125 Query: 124 MITVTVEGKDEVFALSNIQKANLV 147 M+ + EG++ V +++ L Sbjct: 126 MVRLVHEGEELVCPWGDLKNPRLC 149 >UniRef50_A6GK80 Putative uncharacterized protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GK80_9DELT Length = 174 Score = 115 bits (289), Expect = 5e-25, Method: Composition-based stats. Identities = 45/173 (26%), Positives = 70/173 (40%), Gaps = 31/173 (17%) Query: 8 LTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVED 66 + I +G+E + IE+ G+ LR+++DS G+ + DC + + LD + Sbjct: 1 MEAAIEPVCADMGYEALLIEWSGSGQRRVLRVFLDSPKGVTIADCTRMGRLIGNSLDAAE 60 Query: 67 --------------PITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVL----RMAVQ 108 + Y LEVSSPG+DRPL H+ VG V L A Sbjct: 61 AAVEAGEGNPALAALLAPGYTLEVSSPGVDRPLAKKRHFTAQVGGRVKLKTWESPAAADA 120 Query: 109 NRRKWQGVIKAVDGE----------MITVTVEGKDEV--FALSNIQKANLVPH 149 + R + G + AV + + V +D L I++ANLV Sbjct: 121 DERSFNGRLVAVHDDDAAPEDQRRGTVVVHDPERDRTIPIPLPLIRRANLVWE 173 >UniRef50_C7R3D7 Putative uncharacterized protein n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R3D7_JONDD Length = 177 Score = 114 bits (286), Expect = 9e-25, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 66/148 (44%), Gaps = 12/148 (8%) Query: 7 KLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSE----DGINVDDCADVSHQVSAV 61 ++ + + V G L +E++ G T+T+R+ +D + ++ + VS +S Sbjct: 9 QVHDAVAPIVHDAGLFLEDLEYLGSGPTTTIRVTVDLPEDVSGPVGLETISSVSRDLSTA 68 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 LD + Y LEVSSPG RPL H+ R VG +++ N ++ + V Sbjct: 69 LDSVSVLHSQYTLEVSSPGTSRPLTQPRHFRRNVGRLISVKTV----NGERFTERLVEVT 124 Query: 122 GEMITVTVEGKDEVFALSNIQKANLVPH 149 + + AL++I++A + Sbjct: 125 DDAVLFDT---RRHVALADIRRAKVEVE 149 >UniRef50_A8R7M6 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8R7M6_9FIRM Length = 181 Score = 114 bits (286), Expect = 1e-24, Method: Composition-based stats. Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 7/150 (4%) Query: 6 QKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLD 63 +K+ ++++ + L + + + G+ L+I I +DG +++D CA+VS ++SA LD Sbjct: 32 EKIKQLVSDVLGDE-LVLYDVAWHQEGKNKILQIAIMRKDGTMDIDTCAEVSEKISAKLD 90 Query: 64 VEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGE 123 ED I Y LEV SPG +R L T E +GE V + L+ +G + + + Sbjct: 91 EEDFIQSEYFLEVCSPGAERELKTYEQIKDAIGEFVYVKLKDPKAGMCDVKGTLLSCEEN 150 Query: 124 MITVTVEGKDE----VFALSNIQKANLVPH 149 I + K ++NI L Sbjct: 151 SILIQYMDKAVKKKAEIEIANIALIRLSVK 180 >UniRef50_C7RGN7 Putative uncharacterized protein n=3 Tax=Anaerococcus RepID=C7RGN7_ANAPD Length = 147 Score = 114 bits (286), Expect = 1e-24, Method: Composition-based stats. Identities = 43/150 (28%), Positives = 73/150 (48%), Gaps = 6/150 (4%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIRGRTS-TLRIYIDSEDGINVDDCADVSHQVSAV 61 L ++L E+ A +E LG+ELV IEF + + L +I ++DGI ++DC VS + Sbjct: 2 DLTKRLKEIFEADIENLGYELVDIEFKGQKNNKILTFFIYNKDGITIEDCEKVSAFLDEK 61 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 LD D I +Y LEVSS L RP+ T R E + + L+ + + G I + Sbjct: 62 LDEIDIIKDSYYLEVSSQDLSRPIKTDRDLERNKDELLKIKLK----DGEIFLGKIINIG 117 Query: 122 GEMITVTVEGK-DEVFALSNIQKANLVPHF 150 + +E + + ++++ + F Sbjct: 118 EDFYEFILEDENTKNIKKEDVKEIYIEIVF 147 >UniRef50_C7QDY6 Putative uncharacterized protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QDY6_CATAD Length = 203 Score = 113 bits (285), Expect = 1e-24, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 69/156 (44%), Gaps = 15/156 (9%) Query: 6 QKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYI-DSEDGINVDDCADVSHQVSAVLDV 64 +L ++ V A G++L + + + D +DG+++D +D++ VS VLD Sbjct: 11 DRLQALLEPVVAAAGYDLESVRVSQVARRRRVEVVVDGDDGVSLDAVSDITRVVSDVLDA 70 Query: 65 EDPI----TVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 + + Y LEV SPG DRPL +H+ R G V +LR N G + Sbjct: 71 PEGVAVMGEQPYVLEVGSPGTDRPLTLPKHWRRAKGRLVRALLR----NGGDVTGRVLDS 126 Query: 121 DGEMITVTVEG------KDEVFALSNIQKANLVPHF 150 D E + + V G ++ S + KA + F Sbjct: 127 DDEGVLLEVPGKKKGQTEERRLEYSEVAKARVEIEF 162 >UniRef50_C6VUJ7 Putative uncharacterized protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VUJ7_DYAFD Length = 160 Score = 113 bits (285), Expect = 1e-24, Method: Composition-based stats. Identities = 42/162 (25%), Positives = 71/162 (43%), Gaps = 18/162 (11%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIRGR-TSTLRIYIDSEDGINVDDCADVSHQVSAV 61 T+++ L ++ +E LV I + + + I +DS++GI + C +S +++ Sbjct: 2 TVKEHLEVLLAPLLEDGDCFLVDIAIKPSKLSQKVTILVDSDEGITIQQCTSISRRLAKQ 61 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 L+ + T AY LEVSSPGLD+PL Y + VG + + L+ QG + Sbjct: 62 LEELEVFTQAYTLEVSSPGLDQPLLLPRQYKKNVGRNLKITLKS----GEILQGTLTDAG 117 Query: 122 GEMITVTVEGKD-------------EVFALSNIQKANLVPHF 150 IT+ + AL +I KA + F Sbjct: 118 DSDITIQLPAPKKKPKTPVDEASLVRTIALDDISKALIEISF 159 >UniRef50_Q30SS4 Ribosome maturation factor rimP n=2 Tax=Campylobacterales RepID=RIMP_SULDN Length = 149 Score = 113 bits (284), Expect = 1e-24, Method: Composition-based stats. Identities = 42/151 (27%), Positives = 77/151 (50%), Gaps = 12/151 (7%) Query: 8 LTEMITAPVEALGFELVGIEFIR-GRTSTLRIYI------D-SEDGINVDDCADVSHQVS 59 L + I + V++L EL I R G S R+ + D + G+++D+C +S +S Sbjct: 3 LEKDIESFVKSLDLELYEISVARDGDDSIYRVNVLSTQIEDGKKKGVSLDECVHLSRLIS 62 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 +LDV P++ Y LEV +PG++R + T + + +GE V L L+ + K +G++ Sbjct: 63 PLLDVTPPMSGEYRLEVGTPGIERKVSTLKQFVLSIGERVALTLKS----KEKLKGLLLR 118 Query: 120 VDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 V+ I + V+ ++ + I KA + Sbjct: 119 VEESNIYLDVDAEEVCVEFAQISKAKTYFEW 149 >UniRef50_D0WR24 Putative uncharacterized protein n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WR24_9ACTO Length = 160 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 35/150 (23%), Positives = 68/150 (45%), Gaps = 8/150 (5%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIRGRTS-TLRIYID---SEDGINVDDCADVSHQVS 59 + + ++ + V + G L ++ RG + +++ +D G++ D +VS +S Sbjct: 1 MTESISTALDEVVASRGLYLEAVKIGRGGKNLVVKVVVDLPSGPGGVDSDRLTEVSRDIS 60 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 LD D + AY LEVS+PG +R L H++R G V L + + G + + Sbjct: 61 QRLDDVDLVQGAYTLEVSTPGAERSLREPRHFSRAQGRLVELRTV----DGKSVVGRLVS 116 Query: 120 VDGEMITVTVEGKDEVFALSNIQKANLVPH 149 + G+ + V VEG ++ + + Sbjct: 117 LSGDALNVQVEGSRRSVPMAEVVSGRVKID 146 >UniRef50_Q72KG3 Ribosome maturation factor rimP n=3 Tax=Thermaceae RepID=RIMP_THET2 Length = 157 Score = 112 bits (281), Expect = 3e-24, Method: Composition-based stats. Identities = 46/139 (33%), Positives = 67/139 (48%), Gaps = 8/139 (5%) Query: 8 LTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDP 67 L +++ V LG +++ + F RG +R+ E I V D + S + A LD EDP Sbjct: 19 LWQLVEEAVSPLGLDVLEVHFARGE-LLVRLERKDERPITVADLEEASRHIEAALDREDP 77 Query: 68 ITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITV 127 I +Y L V SPG RPLFT H+ RF G L+ V + G I V+GE + Sbjct: 78 IPGSYRLLVESPGPKRPLFTRRHFERFQG------LKAKVPGPEGFTGRILRVEGEEVVF 131 Query: 128 TVEGKDEVFALSNIQKANL 146 V ++ + +ANL Sbjct: 132 QVGDEERRLRIGTF-RANL 149 >UniRef50_D2QL24 Putative uncharacterized protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QL24_9SPHI Length = 170 Score = 112 bits (280), Expect = 5e-24, Method: Composition-based stats. Identities = 42/170 (24%), Positives = 79/170 (46%), Gaps = 28/170 (16%) Query: 5 EQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYI--DSEDGINVDDCADVSHQVSAVL 62 + K+TE++ ++ F +V I+ + L++ I DS+ GI +DDCAD+S ++ + Sbjct: 4 KAKITELLQPYLKNDLFYIVDIQVAGRQGGRLKVTILLDSDAGITIDDCADISRRLGGQM 63 Query: 63 DVEDPITV-AYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 D + + LE+SSPG+D PL + + R VG ++ + L V + GV+++V Sbjct: 64 DEMNFFGDSPFTLEISSPGVDYPLTFSRQFVRNVGRQLIVTLTDGVIRK----GVLESVA 119 Query: 122 GEMITVTVEGKDEV---------------------FALSNIQKANLVPHF 150 + I + +E + + I+KA + F Sbjct: 120 EDHIVLDIEAEKKSKSKKKKDADVSPDLQPVGPTPILFGQIKKAQVEVSF 169 >UniRef50_C2FW05 Protein of hypothetical function DUF150 n=2 Tax=Sphingobacterium spiritivorum RepID=C2FW05_9SPHI Length = 156 Score = 111 bits (278), Expect = 7e-24, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 16/159 (10%) Query: 2 STLEQKLTEMI-TAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSA 60 + +EQ++ E++ + +V I+ L I +D + GI +DDC +S V Sbjct: 3 TKVEQRVEELVLEKIGDREDLFIVSIKMQGNG--VLEILVDGDSGIAIDDCVKISRHVGF 60 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 L+ E+ I AY LEVSSPG+D PL Y + +G V + K +G + V Sbjct: 61 HLEEENVIETAYRLEVSSPGIDSPLVLIRQYEKNIGRNVRVKNHE----GEKREGKLLDV 116 Query: 121 DGEMITVTVEGK---------DEVFALSNIQKANLVPHF 150 IT+ K + V I++ ++ F Sbjct: 117 TESAITIEESKKEKGKKAVPVESVIPFEQIKETKVLISF 155 >UniRef50_Q04GN4 Ribosome maturation factor rimP n=2 Tax=Oenococcus oeni RepID=RIMP_OENOB Length = 156 Score = 111 bits (278), Expect = 7e-24, Method: Composition-based stats. Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 5/146 (3%) Query: 6 QKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSED--GINVDDCADVSHQVSAVLD 63 + E I + L + F G + L I ID +D I ++ ++V+ +S LD Sbjct: 7 DTIKEKIQPILSEKHLLLWDLSFFGGSPAVLTILIDGQDHQAIRMNQISEVTSLISDALD 66 Query: 64 --VEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 DP YNL++SSPG+DR + T EH +G+ + L L + + +G++K+ Sbjct: 67 KVEPDPFPDRYNLDISSPGIDRSIKTDEHLDWALGQPIKLNLFEKIDGSKSAEGILKSFS 126 Query: 122 GEMITVTV-EGKDEVFALSNIQKANL 146 I++ V + + F I K +L Sbjct: 127 DLEISLEVSPAEVKNFPREKISKISL 152 >UniRef50_B6WX92 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WX92_9DELT Length = 244 Score = 111 bits (278), Expect = 9e-24, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 87/196 (44%), Gaps = 47/196 (23%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGI--------------- 46 ++L++ +T + T V+A G E+ G+E + +T+R+++D + Sbjct: 4 NSLKETVTRLATPLVQAQGLEIWGVEIAQAGRTTVRVFVDLPLEVKQAQAALSADSDPAD 63 Query: 47 --------------NVDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYA 92 ++D C ++S Q+ L+VED I AY LEVS+PG R F+ + Sbjct: 64 NLEDSADIMAARSASIDQCEEISRQLGLALEVEDLIEQAYVLEVSTPGFSRLFFSLDQMR 123 Query: 93 RFVGEEVTLVLRMAV------QNRRKWQGVIKAVDGEMIT-----VTVEG-------KDE 134 +VG+ V L + A RR W+GV++ V + V+ EG + Sbjct: 124 SYVGDMVELRMVSAYAPENAPAARRAWRGVLREVTDSAVRVAPASVSAEGDICPEAMDEV 183 Query: 135 VFALSNIQKANLVPHF 150 + +++A+ + F Sbjct: 184 LVPWDMVRRASRIHIF 199 >UniRef50_Q8DHL1 Ribosome maturation factor rimP n=1 Tax=Thermosynechococcus elongatus BP-1 RepID=RIMP_THEEB Length = 157 Score = 110 bits (276), Expect = 1e-23, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 56/141 (39%), Gaps = 2/141 (1%) Query: 8 LTEMITAPVEALGFELVGIEF-IRGRTSTLRIYI-DSEDGINVDDCADVSHQVSAVLDVE 65 + + + +LV +++ LR+ + E+ +++DC +S + LD Sbjct: 10 VQTLAQQVADQEHLDLVSVQWLTHQSPPILRVEVRHPENDTSLEDCERLSRALEMALDEL 69 Query: 66 DPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMI 125 AY LEVSSPGL L + + F G V + + + W+G + D + Sbjct: 70 PEFEFAYVLEVSSPGLSDYLSSDRDFDAFRGFPVRVTTTAPHRGKTLWEGNLIRRDEVNV 129 Query: 126 TVTVEGKDEVFALSNIQKANL 146 + G+ S I L Sbjct: 130 YLNQRGRSLAIPRSLIASVQL 150 >UniRef50_A5GVG1 Ribosome maturation factor rimP n=7 Tax=Cyanobacteria RepID=RIMP_SYNR3 Length = 155 Score = 110 bits (275), Expect = 2e-23, Method: Composition-based stats. Identities = 35/144 (24%), Positives = 66/144 (45%), Gaps = 3/144 (2%) Query: 6 QKLTEMITAPVEALGFELVGIEFIRGRTST-LRIYIDSEDG--INVDDCADVSHQVSAVL 62 + + + +A ++LGF + + R L + + DG +N+DDCA S L Sbjct: 7 EPIEALASATAQSLGFLMESVVLHSHRAPQALIVAVRKGDGSDVNLDDCASFSQAFGEAL 66 Query: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 + + +T AY LE++SPGL L + F G V + R A + +G + D Sbjct: 67 ETGELLTGAYVLEITSPGLGDVLQQDRDFRSFRGFPVCVRQRDAKGGEIQREGTLLGRDA 126 Query: 123 EMITVTVEGKDEVFALSNIQKANL 146 + + + + G+ + S++ + L Sbjct: 127 DAVELNLRGRIQRIPRSDVLEVRL 150 >UniRef50_A3HY55 Putative uncharacterized protein n=1 Tax=Algoriphagus sp. PR1 RepID=A3HY55_9SPHI Length = 157 Score = 110 bits (275), Expect = 2e-23, Method: Composition-based stats. Identities = 41/160 (25%), Positives = 82/160 (51%), Gaps = 14/160 (8%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFI-RGRTSTLRIYIDSEDGINVDDCADVSHQVS 59 MS L+Q + E++ + +V + + + + L I ID++ G+NV CA+VS V+ Sbjct: 1 MSELKQAIEEIVEKHLPDESHFVVEVNLVPKSGKTVLSILIDADQGLNVQTCANVSRAVA 60 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 L+ ++ ++ AY LEVSSPG+D PL + + + +G E+ ++L + ++ +G + Sbjct: 61 EELEAKELMSEAYILEVSSPGVDYPLSSRRQFQKNIGRELKVLL----TSGQELKGKLLE 116 Query: 120 VDGEMITVTV---------EGKDEVFALSNIQKANLVPHF 150 VD + + V ++ V + ++K + F Sbjct: 117 VDTTGVKMLVKKKEKGKKATEEEVVLSFEEMKKTIVQVSF 156 >UniRef50_C8PR25 Putative uncharacterized protein n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PR25_9SPIO Length = 186 Score = 109 bits (274), Expect = 2e-23, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 71/135 (52%), Gaps = 5/135 (3%) Query: 13 TAPVEALGFELVGIEFIRGRT-STLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPITVA 71 V LG++LV ++ + ++ ++ I S++G+ +DDC+ V + + +V + Sbjct: 53 EQLVTGLGYKLVDLQIVHQKSAWLVKAVIYSKNGVGIDDCSKVHRALLSRAEVL-LNSQD 111 Query: 72 YNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTVEG 131 +EVSSPGL+R + A + F+GE + + L ++ + +G + A D I + + G Sbjct: 112 IQMEVSSPGLNRVIKNAAEFQAFIGENIKV-LEVSCPDW--LEGELLAADSTGIRLNISG 168 Query: 132 KDEVFALSNIQKANL 146 + ++I+KA L Sbjct: 169 EQRDIRYADIKKAKL 183 >UniRef50_Q47RV4 Ribosome maturation factor rimP n=1 Tax=Thermobifida fusca YX RepID=RIMP_THEFY Length = 157 Score = 109 bits (273), Expect = 4e-23, Method: Composition-based stats. Identities = 40/147 (27%), Positives = 78/147 (53%), Gaps = 6/147 (4%) Query: 6 QKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDV 64 ++L +++ + G +L G++ G+ +R+ +DS+DG++++ +VS ++S LD Sbjct: 8 ERLAQLVAPILAEAGLDLEGLDITPVGKRRLVRVVVDSDDGVDLERIGEVSQKISTALDE 67 Query: 65 EDPITV-AYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGE 123 D + Y LEV+SPG+DRPL H+ R G V + + +G + D Sbjct: 68 VDVMGQSPYVLEVTSPGVDRPLTEPRHWRRARGRLVH----APLVAGGQVKGRVIDADET 123 Query: 124 MITVTVEGKDEVFALSNIQKANLVPHF 150 +T V+G+ +V+A S++ + + F Sbjct: 124 GVTFDVDGQSQVYAFSDLGRGKVQVEF 150 >UniRef50_UPI0001BCD1F0 hypothetical protein AmarD1_13863 n=1 Tax=Aeromicrobium marinum DSM 15272 RepID=UPI0001BCD1F0 Length = 160 Score = 108 bits (272), Expect = 4e-23, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 16/158 (10%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVL 62 ++++ T ++ + VE G EL + GR LR+ +DS+DG+ +D V+ ++AVL Sbjct: 1 MDERFTALVRSCVEPEGLELDDLTISAAGRKRVLRVALDSDDGVGIDQITAVTRALNAVL 60 Query: 63 D-----VEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI 117 D V Y LEV+S G+ PL + H+ R G V + L + G I Sbjct: 61 DDDPAAVAALGGTPYTLEVTSRGVSSPLTSPRHWRRNHGRLVKVEL----TDGAVETGRI 116 Query: 118 KAVDGEMITVTVEGKD------EVFALSNIQKANLVPH 149 + T+ + + A + +A + Sbjct: 117 TSSTDTHATLAQQERRGAPTDIREIAYPEVARALVQVE 154 >UniRef50_UPI0001C338FD hypothetical protein UCYN_07210 n=1 Tax=cyanobacterium UCYN-A RepID=UPI0001C338FD Length = 125 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 33/111 (29%), Positives = 60/111 (54%), Gaps = 2/111 (1%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIRGR-TSTLRIYIDSE-DGINVDDCADVSHQVSAV 61 L Q++ ++ T ++ +G ++V + F + S LR I + + I++DDCA VS + ++ Sbjct: 5 LIQQIIDLTTPVIKEMGIDIVNVVFHTNKCPSILRFDISNPAENISLDDCAKVSRTLESI 64 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRK 112 LD I AY LEVSSPG+ + L + + F G + ++ N+ + Sbjct: 65 LDETTIIPHAYVLEVSSPGISQILNSERDFTTFQGFAIGIMTSPPYLNKER 115 >UniRef50_D0LBI5 Putative uncharacterized protein n=1 Tax=Gordonia bronchialis DSM 43247 RepID=D0LBI5_GORB4 Length = 179 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 68/156 (43%), Gaps = 10/156 (6%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVS 59 M +L +++ V GF+L + R + +D + G ++D A++S ++ Sbjct: 1 MPIGSPELNDLVEKVVTDRGFDLEDVVVRRRDGRDEFSVVVDRDGGSDLDVLAELSTEIG 60 Query: 60 AVLDVEDPITVA-YNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 VLD + A Y LEV+SPG+DRPL H+ R +G V + G + Sbjct: 61 EVLDAVPALADAAYTLEVTSPGIDRPLTAPRHWRRALGRRVRIE----RDGSDAVVGRVG 116 Query: 119 AVDGEMITVTVEGKD----EVFALSNIQKANLVPHF 150 V G+ + + V K E ++ +A + F Sbjct: 117 QVSGDDVAIVVNHKGRLAVETVGFDSVTRAVVQVEF 152 >UniRef50_B8J1Y7 Ribosome maturation factor rimP n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=RIMP_DESDA Length = 258 Score = 107 bits (267), Expect = 1e-22, Method: Composition-based stats. Identities = 45/204 (22%), Positives = 79/204 (38%), Gaps = 61/204 (29%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYID-------------------- 41 + L + + + V LG + G+E R + +R+++D Sbjct: 4 NALRETIIRLAQPVVHTLGLVIWGVETARAGRTIVRLFVDVPTIPQRPGMPEGSEEPSSA 63 Query: 42 --------------------SEDGINVDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGL 81 + ++ C ++S ++ L+VED I AY LEVS+PGL Sbjct: 64 ITAPAPAHDPQESSGAEAPAAPTSATIEQCEEISRHLALALEVEDSIADAYVLEVSTPGL 123 Query: 82 DRPLFTAEHYARFVGEEVTLVLRMAVQN---------RRKWQGVIKAVDGEM-----ITV 127 R F+ E +VG+ V L V + RR W+G + AV+ + +TV Sbjct: 124 SRLFFSLEQMIPYVGDVVEARLHTPVASTDPAAHGGPRRVWRGTLVAVEDDAFVLAPVTV 183 Query: 128 TVEGKDE-------VFALSNIQKA 144 + EG+ E +++A Sbjct: 184 SPEGEVEDENQPPVRLPWEAVRRA 207 >UniRef50_A3PY72 Ribosome maturation factor rimP n=18 Tax=Mycobacterium RepID=RIMP_MYCSJ Length = 192 Score = 107 bits (267), Expect = 2e-22, Method: Composition-based stats. Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 20/162 (12%) Query: 5 EQKLTEMITAPVEALGFELVGIEFIRG-RTSTLRIYIDSEDGINVDDCADVSHQVSAVLD 63 ++++ E++ G+E+ + G R + + +D + +++D A +S S LD Sbjct: 15 QEQVKELLDGEFARAGYEIENVVIDGGARPPRITVVVDGDRPLDLDTVASLSRSASEQLD 74 Query: 64 VEDPITVA-------YNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGV 116 D Y LEV+SPG+DRPL T +HY R G +V L L + + G Sbjct: 75 RVDESGPGVTADAATYVLEVTSPGVDRPLTTEKHYRRARGRKVELTL----SDGSQLTGR 130 Query: 117 IKA--VDGEMITVTV-EGKD-----EVFALSNIQKANLVPHF 150 I A DGE +++ V EG L I KA + F Sbjct: 131 IGALTADGESVSLVVREGARANFSVRELPLEGIVKAVVQVEF 172 >UniRef50_Q73NP4 Ribosome maturation factor rimP n=1 Tax=Treponema denticola RepID=RIMP_TREDE Length = 148 Score = 107 bits (267), Expect = 2e-22, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 66/134 (49%), Gaps = 5/134 (3%) Query: 13 TAPVEALGFELVGIEFIRGRT-STLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPITVA 71 VE LGF+LV + + + ++ I SE G+ + DC V + ++ + Sbjct: 16 EPLVEGLGFKLVDLNVLHKKDVWQVKAVIKSEKGVGIKDCTSVHRTLQPRIEAL-IGSQD 74 Query: 72 YNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTVEG 131 +EVSSPG++R + A + FVGEE + ++ + R G+IK V+ E + + + Sbjct: 75 VTMEVSSPGINRLVKRAVEFYAFVGEEAQI-WDNSITDWR--HGIIKEVNSEGLVLNSDN 131 Query: 132 KDEVFALSNIQKAN 145 +D +I+KA Sbjct: 132 QDIQIPYQDIKKAR 145 >UniRef50_D1BJ69 Uncharacterized conserved protein n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BJ69_SANKS Length = 181 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 63/154 (40%), Gaps = 10/154 (6%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFI-RGRTSTLRIYID----SEDGINVDDCADVSH 56 S + +++ + + VE+ G L ++ G + +R+ +D + +D A+VS Sbjct: 4 SPIAEQVADAVRPGVESAGLVLEDVQVAPAGARTVVRVVLDLTEDQTGALGLDQVAEVSR 63 Query: 57 QVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGV 116 +S LD + + LEV+SPG RPL H+ R V + L + Sbjct: 64 VISDTLDTLPALPGKFTLEVTSPGTSRPLTELRHFKRARTRLVAVTLVEGAP----FTER 119 Query: 117 IKAVDGEMITVT-VEGKDEVFALSNIQKANLVPH 149 + +V+ E++ +G + + + Sbjct: 120 LTSVEDEVLVFEGADGAPHEVPFAAVSSGQVEVE 153 >UniRef50_UPI000185BE37 conserved hypothetical protein n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185BE37 Length = 190 Score = 106 bits (265), Expect = 3e-22, Method: Composition-based stats. Identities = 37/159 (23%), Positives = 73/159 (45%), Gaps = 15/159 (9%) Query: 6 QKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLD- 63 +K+ + ++ + +G ++ ++ +R G S + + ID+++ ++D +H+VS+ LD Sbjct: 7 EKIEQFVSPALAQIGLDVEDVKVVRAGAKSQVIVLIDADERPDLDVLEQATHEVSSALDA 66 Query: 64 -----VEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 D Y LEVS+PG+D PL H+ R G + L + G + Sbjct: 67 AEARGEADFGAQGYTLEVSTPGIDAPLTQPRHWRRNRGRIAEISLADGSAIAARI-GALS 125 Query: 119 AVDGEMITVTVEG-------KDEVFALSNIQKANLVPHF 150 + +I VT +G + L+N+ +A + F Sbjct: 126 PDEESIILVTSKGPKGRLKAVGQRVQLTNVARAVVQVEF 164 >UniRef50_D1C050 Putative uncharacterized protein n=1 Tax=Xylanimonas cellulosilytica DSM 15894 RepID=D1C050_XYLCX Length = 192 Score = 106 bits (265), Expect = 3e-22, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 8/153 (5%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSE----DGINVDDCADVSH 56 S + + ++ V+A G L + R G S +R+ +D + D VS Sbjct: 14 SATAEAVRRVVAPAVDAEGLFLESVSATRAGARSVVRVTVDLPEDAVGSLGSDALDAVSR 73 Query: 57 QVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGV 116 +SA LD +D + Y LEVS+PG RPL H+ R VTL L + + Q V Sbjct: 74 AISAALDADDVVRGVYVLEVSTPGTSRPLTELRHFKRARTRLVTLSLVDGGEAEGRLQDV 133 Query: 117 IKAVDGEMITVTVEGKDEVFALSNIQKANLVPH 149 + DG+ + + G+ F ++ +++ + Sbjct: 134 VAGTDGDELVLEDGGR---FPVATVRQGRVEVE 163 >UniRef50_C1XJ52 Uncharacterized conserved protein n=1 Tax=Meiothermus ruber DSM 1279 RepID=C1XJ52_MEIRU Length = 153 Score = 106 bits (265), Expect = 3e-22, Method: Composition-based stats. Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 8/128 (6%) Query: 9 TEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSED--GINVDDCADVSHQVSAVLDV-E 65 +++ + + LG+E++ G+ L + I+ +D I++ D + +SA LD E Sbjct: 10 SQVAESVLAPLGYEVLEAGLKSGKNPVLLVRIERKDEVPISIADLERANRALSAHLDTLE 69 Query: 66 DPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMI 125 + Y L+V SPG DRPLFTA H+ RF G +V + + + G I AV G+M+ Sbjct: 70 ALLPARYLLQVESPGADRPLFTARHFERFAGLKVRVR-----SPQGNFTGRIGAVRGDMV 124 Query: 126 TVTVEGKD 133 +E + Sbjct: 125 EFLLEKDE 132 >UniRef50_Q0EZ70 Putative uncharacterized protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZ70_9PROT Length = 158 Score = 104 bits (261), Expect = 8e-22, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 73/149 (48%), Gaps = 12/149 (8%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIRGR-TSTLRIYIDSEDGINVDDCADVSHQVSAVL 62 +E K+ ++ V+ LG E++ I G L++ +D G++ +S ++ L Sbjct: 1 MESKIESLLRPIVDELGVEIIKISLGGGGHNPLLKVVVDKAGGVDSGMLERISRGLALQL 60 Query: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGV-IKAVD 121 DVED I A+ LEV++PGLD PL T + R+ GE + ++ + +G + V Sbjct: 61 DVEDLIKSAFRLEVTTPGLDWPLTTNADFERYRGEWLKVM----FADGSSQEGRNLGPVS 116 Query: 122 GEMITVTVEG------KDEVFALSNIQKA 144 + VEG +++V ++++ K Sbjct: 117 DHAFMLLVEGSKRVKDQEQVIEMADVNKV 145 >UniRef50_C2BRP0 Putative uncharacterized protein n=1 Tax=Mobiluncus curtisii ATCC 43063 RepID=C2BRP0_9ACTO Length = 197 Score = 104 bits (261), Expect = 8e-22, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 64/149 (42%), Gaps = 9/149 (6%) Query: 6 QKLTEMITAPVEALGFELVGIEFIRGRT-STLRIYIDSEDGIN---VDDCADVSHQVSAV 61 + + +++ VEA G L I + + I +D DG++ D S + A Sbjct: 40 EAIIQVVNPVVEAAGLYLEKIAVTGPKHQRVVAISLDLPDGVDNLGSAQLEDASRAIGAA 99 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 LD DP++ AY LE+S+ G + L R +G++V + + G++ V Sbjct: 100 LDAADPLSGAYTLEISTLGAEHELTNLRLARRALGKDVEVRT-----GGQVRAGILTEVT 154 Query: 122 GEMITVTVEGKDEVFALSNIQKANLVPHF 150 ++V +G V+ +I+ V F Sbjct: 155 ETGLSVNDDGDVTVYPFEDIESVRTVILF 183 >UniRef50_B2GKR8 Ribosome maturation factor rimP n=1 Tax=Kocuria rhizophila DC2201 RepID=RIMP_KOCRD Length = 163 Score = 104 bits (260), Expect = 9e-22, Method: Composition-based stats. Identities = 37/126 (29%), Positives = 56/126 (44%), Gaps = 9/126 (7%) Query: 8 LTEMITAPVEALGFELVGIEFI-RGRTSTLRIYIDSEDG---INVDDCADVSHQVSAVLD 63 + + V A G L E +G T TL++ +D DG + +D A V+ ++S LD Sbjct: 9 IRATVEPVVAAAGLHLEECELKGQGATRTLQVLVDLPDGTEALGLDRVAAVAQEISDALD 68 Query: 64 VEDPITVA-YNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 +DP+ Y LEVSSPG R L T H+ R VG V + ++ + Sbjct: 69 RDDPVPGPPYELEVSSPGATRTLETPRHWRRTVGHLVRIRTLE----GERYTARLLEAHE 124 Query: 123 EMITVT 128 + V Sbjct: 125 DHAVVQ 130 >UniRef50_C1A8N5 Ribosome maturation factor rimP n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=RIMP_GEMAT Length = 155 Score = 104 bits (260), Expect = 1e-21, Method: Composition-based stats. Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 10/155 (6%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIRGR-TSTLRIYIDS--EDGINVDDCADVSHQVSA 60 + + + ++T + LGF+LV + R L I ID E+ + +DDCA VS + A Sbjct: 1 MGEAIEPIVTQELAGLGFDLVELRRGGSRARPVLEIRIDRRDEEKVTIDDCARVSRALEA 60 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 L+ + Y LEVSSPG DRPL A + RFVG T+ + +++ + I AV Sbjct: 61 RLEAAALVGEQYVLEVSSPGADRPLRHAADWRRFVGRRATVTSGLLAGGKQEVE--IVAV 118 Query: 121 DGEM-----ITVTVEGKDEVFALSNIQKANLVPHF 150 GE + +G++ L + +A L ++ Sbjct: 119 TGEGGAEVALVRDPKGREVSVPLREVSQARLAFNW 153 >UniRef50_B5Y930 Ribosome maturation factor rimP n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=RIMP_COPPD Length = 169 Score = 104 bits (260), Expect = 1e-21, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 59/143 (41%), Gaps = 2/143 (1%) Query: 8 LTEMITAPVEALGFELVGIEFIRGRTS-TLRIYIDSEDGINVDDCADVSHQVSAVLDVED 66 L E I+ V + GF + +E + + + + + E + + DC ++ + +L+ Sbjct: 10 LEERISKIVVSKGFYFIDLEERMEKGAHIISVVVHGEPSVTIGDCEKLTRAILPLLESFP 69 Query: 67 PITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMIT 126 +LEV+SPGLDR L Y F G + + + + + + E + Sbjct: 70 WYGDNDHLEVTSPGLDRVLKREWEYEIFKGRVIDIS-FDRDGKSQTIRAKLVGRENENVV 128 Query: 127 VTVEGKDEVFALSNIQKANLVPH 149 + EG ++KA LV Sbjct: 129 IEYEGNYFRIPFDQVRKAKLVFD 151 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_C9R8Y0 Putative uncharacterized protein n=1 Tax=Ammonif... 188 5e-47 UniRef50_A4WEY5 Ribosome maturation factor rimP n=181 Tax=Proteo... 186 2e-46 UniRef50_A1ST43 Ribosome maturation factor rimP n=90 Tax=Gammapr... 184 6e-46 UniRef50_C8X0H0 Putative uncharacterized protein n=1 Tax=Desulfo... 182 3e-45 UniRef50_B1I359 Ribosome maturation factor rimP n=4 Tax=Clostrid... 179 2e-44 UniRef50_Q0A795 Ribosome maturation factor rimP n=1 Tax=Alkalili... 179 2e-44 UniRef50_Q2RJM9 Ribosome maturation factor rimP n=1 Tax=Moorella... 178 4e-44 UniRef50_Q5WT34 Ribosome maturation factor rimP n=5 Tax=Legionel... 177 8e-44 UniRef50_B5JRQ8 Putative uncharacterized protein n=2 Tax=Gammapr... 177 1e-43 UniRef50_Q31GK7 Ribosome maturation factor rimP n=2 Tax=Gammapro... 176 1e-43 UniRef50_Q09BT8 YlxS n=1 Tax=Stigmatella aurantiaca DW4/3-1 RepI... 176 2e-43 UniRef50_D0L0S8 Putative uncharacterized protein n=1 Tax=Halothi... 176 2e-43 UniRef50_B8FR10 Ribosome maturation factor rimP n=2 Tax=Desulfit... 175 3e-43 UniRef50_Q3AB94 Ribosome maturation factor rimP n=1 Tax=Carboxyd... 175 3e-43 UniRef50_B8GP00 Ribosome maturation factor rimP n=1 Tax=Thioalka... 174 6e-43 UniRef50_Q15V74 Ribosome maturation factor rimP n=8 Tax=Gammapro... 174 8e-43 UniRef50_A9N8V8 Ribosome maturation factor rimP n=6 Tax=Coxiella... 174 8e-43 UniRef50_Q3J9B4 Ribosome maturation factor rimP n=4 Tax=Gammapro... 172 3e-42 UniRef50_A4XL73 Ribosome maturation factor rimP n=2 Tax=Clostrid... 171 5e-42 UniRef50_B5YEH1 Ribosome maturation factor rimP n=2 Tax=Dictyogl... 171 6e-42 UniRef50_B0K1E0 Ribosome maturation factor rimP n=18 Tax=Clostri... 171 7e-42 UniRef50_A6NTX5 Putative uncharacterized protein n=1 Tax=Bactero... 170 8e-42 UniRef50_A7H9F0 Ribosome maturation factor rimP n=5 Tax=Myxococc... 170 1e-41 UniRef50_B9ZLN5 Putative uncharacterized protein n=1 Tax=Thioalk... 170 1e-41 UniRef50_B0THQ9 Ribosome maturation factor rimP n=1 Tax=Heliobac... 168 4e-41 UniRef50_B0TQA4 Ribosome maturation factor rimP n=34 Tax=Gammapr... 168 6e-41 UniRef50_B2A393 Ribosome maturation factor rimP n=1 Tax=Natranae... 168 6e-41 UniRef50_C6D2F6 Putative uncharacterized protein n=3 Tax=Bacilla... 167 7e-41 UniRef50_Q30WJ2 Ribosome maturation factor rimP n=1 Tax=Desulfov... 167 8e-41 UniRef50_B1J268 Ribosome maturation factor rimP n=21 Tax=Gammapr... 167 1e-40 UniRef50_A8PNL6 15 kDa protein n=1 Tax=Rickettsiella grylli RepI... 167 1e-40 UniRef50_Q1NIJ0 Putative uncharacterized protein n=2 Tax=Deltapr... 165 5e-40 UniRef50_B8CW69 Ribosome maturation factor rimP n=1 Tax=Halother... 165 5e-40 UniRef50_A6VU27 Ribosome maturation factor rimP n=18 Tax=Gammapr... 164 6e-40 UniRef50_A1AML8 Ribosome maturation factor rimP n=8 Tax=Desulfur... 164 6e-40 UniRef50_D0LZ93 Putative uncharacterized protein n=1 Tax=Haliang... 164 7e-40 UniRef50_Q5F799 Ribosome maturation factor rimP n=27 Tax=Neisser... 163 2e-39 UniRef50_C6LLB2 Putative uncharacterized protein n=4 Tax=Clostri... 163 2e-39 UniRef50_Q3A4B0 Ribosome maturation factor rimP n=3 Tax=Desulfur... 162 2e-39 UniRef50_B4U6H1 Ribosome maturation factor rimP n=3 Tax=Aquifica... 162 3e-39 UniRef50_C4V3N9 Protein of hypothetical function DUF150 n=1 Tax=... 162 5e-39 UniRef50_A9VT54 Ribosome maturation factor rimP n=6 Tax=Bacillus... 160 9e-39 UniRef50_C7LRI2 Putative uncharacterized protein n=1 Tax=Desulfo... 160 9e-39 UniRef50_Q895K1 Ribosome maturation factor rimP n=1 Tax=Clostrid... 160 1e-38 UniRef50_C3P5L9 Ribosome maturation factor rimP n=253 Tax=Firmic... 160 1e-38 UniRef50_D1BM56 Putative uncharacterized protein n=4 Tax=Veillon... 160 2e-38 UniRef50_A1WXV3 Ribosome maturation factor rimP n=3 Tax=Gammapro... 159 3e-38 UniRef50_D2RKW8 Putative uncharacterized protein n=2 Tax=Acidami... 159 3e-38 UniRef50_Q67P90 Ribosome maturation factor rimP n=2 Tax=Clostrid... 159 4e-38 UniRef50_A9HF10 Ribosome maturation factor rimP n=10 Tax=Acetoba... 158 4e-38 UniRef50_C0GUB7 Putative uncharacterized protein n=1 Tax=Desulfo... 158 5e-38 UniRef50_C7MNM1 Uncharacterized conserved protein n=4 Tax=Coriob... 158 6e-38 UniRef50_A4BTQ0 Putative uncharacterized protein n=1 Tax=Nitroco... 158 6e-38 UniRef50_Q2LWU4 Ribosome maturation factor rimP n=1 Tax=Syntroph... 157 1e-37 UniRef50_A9KNW8 Ribosome maturation factor rimP n=13 Tax=Clostri... 157 1e-37 UniRef50_A8MHI0 Ribosome maturation factor rimP n=11 Tax=Clostri... 157 1e-37 UniRef50_Q01W33 Ribosome maturation factor rimP n=1 Tax=Candidat... 157 1e-37 UniRef50_C4Z5N3 Ribosome maturation factor rimP n=10 Tax=Bacteri... 157 1e-37 UniRef50_B5EMC8 Ribosome maturation factor rimP n=2 Tax=Acidithi... 157 1e-37 UniRef50_C9KKC0 Putative uncharacterized protein n=2 Tax=Veillon... 156 2e-37 UniRef50_B0PH19 Putative uncharacterized protein n=1 Tax=Anaerot... 156 2e-37 UniRef50_A1AV97 Ribosome maturation factor rimP n=3 Tax=Bacteria... 156 2e-37 UniRef50_A9G896 Ribosome maturation factor rimP n=1 Tax=Sorangiu... 156 2e-37 UniRef50_Q1GXD8 Ribosome maturation factor rimP n=16 Tax=Betapro... 155 3e-37 UniRef50_A8GW29 Ribosome maturation factor rimP n=13 Tax=Rickett... 155 4e-37 UniRef50_C0QTL6 Ribosome maturation factor rimP n=4 Tax=Hydrogen... 155 4e-37 UniRef50_B9E1J8 Ribosome maturation factor rimP n=15 Tax=Clostri... 154 7e-37 UniRef50_C5VSJ6 Putative uncharacterized protein n=1 Tax=Clostri... 154 1e-36 UniRef50_D2Q1L3 Putative uncharacterized protein n=1 Tax=Kribbel... 153 1e-36 UniRef50_C6C0D6 Ribosome maturation factor rimP n=1 Tax=Desulfov... 153 1e-36 UniRef50_A0LE22 Ribosome maturation factor rimP n=1 Tax=Magnetoc... 153 2e-36 UniRef50_B6IVF3 Ribosome maturation factor rimP n=1 Tax=Rhodospi... 153 2e-36 UniRef50_Q72EQ8 Ribosome maturation factor rimP n=3 Tax=Desulfov... 153 2e-36 UniRef50_Q2VZU7 Ribosome maturation factor rimP n=4 Tax=Alphapro... 153 2e-36 UniRef50_Q7NFN6 Ribosome maturation factor rimP n=1 Tax=Gloeobac... 153 2e-36 UniRef50_A0LHL6 Ribosome maturation factor rimP n=1 Tax=Syntroph... 152 2e-36 UniRef50_D1U698 Putative uncharacterized protein n=1 Tax=Desulfo... 152 3e-36 UniRef50_A8ZZ67 Ribosome maturation factor rimP n=1 Tax=Desulfoc... 152 4e-36 UniRef50_B1CB57 Putative uncharacterized protein n=1 Tax=Anaerof... 151 8e-36 UniRef50_Q6AJY2 Ribosome maturation factor rimP n=1 Tax=Desulfot... 150 1e-35 UniRef50_B8FCY3 Ribosome maturation factor rimP n=1 Tax=Desulfat... 150 2e-35 UniRef50_A5FV18 Ribosome maturation factor rimP n=2 Tax=Acetobac... 150 2e-35 UniRef50_C8NBH5 BCR/YhbC family protein n=1 Tax=Cardiobacterium ... 149 2e-35 UniRef50_Q2RMS3 Ribosome maturation factor rimP n=2 Tax=cellular... 149 3e-35 UniRef50_A4X4N4 Ribosome maturation factor rimP n=3 Tax=Actinomy... 149 3e-35 UniRef50_A5VCZ9 Ribosome maturation factor rimP n=8 Tax=Sphingom... 149 3e-35 UniRef50_Q14K22 Ribosome maturation factor rimP n=15 Tax=Francis... 149 3e-35 UniRef50_Q1IIT1 Ribosome maturation factor rimP n=1 Tax=Candidat... 149 3e-35 UniRef50_D1Y7J0 Putative uncharacterized protein n=1 Tax=Pyramid... 149 3e-35 UniRef50_A5EWZ1 Ribosome maturation factor rimP n=1 Tax=Dichelob... 149 4e-35 UniRef50_Q1GCH5 Ribosome maturation factor rimP n=5 Tax=Rhodobac... 148 4e-35 UniRef50_Q0C5Z8 Ribosome maturation factor rimP n=1 Tax=Hyphomon... 147 8e-35 UniRef50_B2IIK0 Ribosome maturation factor rimP n=19 Tax=Alphapr... 147 1e-34 UniRef50_B5YJX5 Ribosome maturation factor rimP n=1 Tax=Thermode... 147 1e-34 UniRef50_B9DPF1 Ribosome maturation factor rimP n=13 Tax=Bacilla... 147 1e-34 UniRef50_B6FZB3 Putative uncharacterized protein n=1 Tax=Clostri... 147 1e-34 UniRef50_A7HZ90 Ribosome maturation factor rimP n=1 Tax=Parvibac... 147 2e-34 UniRef50_A1B584 Ribosome maturation factor rimP n=28 Tax=Bacteri... 146 2e-34 UniRef50_UPI0001C373AC hypothetical protein RflaF_02144 n=1 Tax=... 146 2e-34 UniRef50_A8S8G3 Putative uncharacterized protein n=1 Tax=Faecali... 146 2e-34 UniRef50_Q3IYN8 Ribosome maturation factor rimP n=10 Tax=Rhodoba... 146 2e-34 UniRef50_A8IG16 Ribosome maturation factor rimP n=3 Tax=Rhizobia... 146 2e-34 UniRef50_D2MK27 Putative uncharacterized protein n=1 Tax=Candida... 145 4e-34 UniRef50_B2KC93 Ribosome maturation factor rimP n=1 Tax=Elusimic... 145 5e-34 UniRef50_Q11BD1 Ribosome maturation factor rimP n=6 Tax=Rhizobia... 145 5e-34 UniRef50_D1VSB6 Putative uncharacterized protein n=1 Tax=Peptoni... 145 6e-34 UniRef50_Q8RHJ4 Ribosome maturation factor rimP n=9 Tax=Fusobact... 145 6e-34 UniRef50_B1LX00 Ribosome maturation factor rimP n=6 Tax=Methylob... 145 6e-34 UniRef50_C9LLP6 Putative uncharacterized protein n=1 Tax=Dialist... 144 6e-34 UniRef50_Q0SSD0 Ribosome maturation factor rimP n=16 Tax=Clostri... 144 7e-34 UniRef50_A7VT55 Putative uncharacterized protein n=1 Tax=Clostri... 144 8e-34 UniRef50_D2LJ62 Putative uncharacterized protein n=1 Tax=Rhodomi... 143 1e-33 UniRef50_Q97I55 Ribosome maturation factor rimP n=1 Tax=Clostrid... 142 3e-33 UniRef50_B2I724 Ribosome maturation factor rimP n=20 Tax=Xanthom... 142 5e-33 UniRef50_B9K861 Ribosome maturation factor rimP n=6 Tax=Thermoto... 141 6e-33 UniRef50_B9L6E1 Ribosome maturation factor rimP n=1 Tax=Nautilia... 141 6e-33 UniRef50_C0W7C6 YhbC family protein n=1 Tax=Actinomyces urogenit... 141 8e-33 UniRef50_B1GZN4 Ribosome maturation factor rimP n=1 Tax=uncultur... 140 9e-33 UniRef50_A6LMV9 Ribosome maturation factor rimP n=1 Tax=Thermosi... 140 1e-32 UniRef50_C5BWS6 Ribosome maturation factor rimP n=1 Tax=Beutenbe... 140 1e-32 UniRef50_C1SH19 Uncharacterized conserved protein n=1 Tax=Denitr... 139 3e-32 UniRef50_C9RKT2 Putative uncharacterized protein n=1 Tax=Fibroba... 139 3e-32 UniRef50_A7ZC71 Ribosome maturation factor rimP n=3 Tax=Campylob... 138 4e-32 UniRef50_A1SLL0 Ribosome maturation factor rimP n=2 Tax=Actinomy... 138 4e-32 UniRef50_C3WCG0 Putative uncharacterized protein n=6 Tax=Fusobac... 138 4e-32 UniRef50_A6Q228 Ribosome maturation factor rimP n=3 Tax=Epsilonp... 138 5e-32 UniRef50_D2SDW9 Putative uncharacterized protein n=1 Tax=Geoderm... 138 5e-32 UniRef50_C6NSC0 Transcription termination protein NusA-like prot... 138 7e-32 UniRef50_B0T164 Ribosome maturation factor rimP n=6 Tax=Alphapro... 137 7e-32 UniRef50_C7H124 Putative uncharacterized protein n=1 Tax=Eubacte... 137 8e-32 UniRef50_C5NYH1 Putative uncharacterized protein n=1 Tax=Gemella... 137 1e-31 UniRef50_C0QHM0 Ribosome maturation factor rimP n=1 Tax=Desulfob... 137 1e-31 UniRef50_B8DN15 Ribosome maturation factor rimP n=1 Tax=Desulfov... 137 1e-31 UniRef50_C7HSS3 Putative uncharacterized protein n=1 Tax=Anaeroc... 137 1e-31 UniRef50_C9M6Q7 Putative uncharacterized protein n=1 Tax=Jonquet... 137 1e-31 UniRef50_Q5HX28 Ribosome maturation factor rimP n=18 Tax=Campylo... 137 2e-31 UniRef50_C6XRW8 Putative uncharacterized protein n=1 Tax=Hirschi... 136 2e-31 UniRef50_A8ST27 Putative uncharacterized protein n=1 Tax=Coproco... 136 2e-31 UniRef50_A6WWW8 Ribosome maturation factor rimP n=37 Tax=Rhizobi... 136 2e-31 UniRef50_C6HXJ9 Putative uncharacterized protein n=1 Tax=Leptosp... 136 3e-31 UniRef50_Q7MQU0 Ribosome maturation factor rimP n=1 Tax=Wolinell... 136 3e-31 UniRef50_C4DMD6 Uncharacterized conserved protein n=4 Tax=Actino... 135 3e-31 UniRef50_Q6MMS8 Ribosome maturation factor rimP n=1 Tax=Bdellovi... 135 3e-31 UniRef50_D1PLN8 Putative uncharacterized protein n=1 Tax=Subdoli... 135 3e-31 UniRef50_Q07V75 Ribosome maturation factor rimP n=14 Tax=Bradyrh... 135 6e-31 UniRef50_C3XMY5 Putative uncharacterized protein n=1 Tax=Helicob... 135 6e-31 UniRef50_Q47D92 Ribosome maturation factor rimP n=2 Tax=Betaprot... 134 6e-31 UniRef50_B1VYN8 Ribosome maturation factor rimP n=13 Tax=Strepto... 134 7e-31 UniRef50_C5F193 Putative uncharacterized protein n=2 Tax=Helicob... 134 8e-31 UniRef50_A3ER83 Putative uncharacterized protein n=2 Tax=Leptosp... 134 9e-31 UniRef50_B8GX01 Ribosome maturation factor rimP n=4 Tax=Caulobac... 134 1e-30 UniRef50_C0W0C2 Protein of hypothetical function DUF150 n=1 Tax=... 133 2e-30 UniRef50_D0XR54 Putative uncharacterized protein n=1 Tax=Brevund... 133 2e-30 UniRef50_B1MZH7 Ribosome maturation factor rimP n=3 Tax=Leuconos... 133 2e-30 UniRef50_D0MI89 Putative uncharacterized protein n=1 Tax=Rhodoth... 133 2e-30 UniRef50_A8YVR1 Ribosome maturation factor rimP n=20 Tax=Lactoba... 132 3e-30 UniRef50_C7H6A0 Protein associated with NUS operon n=2 Tax=Clost... 132 3e-30 UniRef50_C5CEP0 Putative uncharacterized protein n=1 Tax=Kosmoto... 132 3e-30 UniRef50_B0VFB7 Putative uncharacterized protein n=1 Tax=Candida... 132 3e-30 UniRef50_C8PIF5 Putative uncharacterized protein n=1 Tax=Campylo... 132 4e-30 UniRef50_A8SMZ9 Putative uncharacterized protein n=1 Tax=Parvimo... 132 4e-30 UniRef50_A1UU47 Ribosome maturation factor rimP n=5 Tax=Bartonel... 132 4e-30 UniRef50_B7IDT7 Ribosome maturation factor rimP n=1 Tax=Thermosi... 132 5e-30 UniRef50_Q1MQZ0 Ribosome maturation factor rimP n=1 Tax=Lawsonia... 131 6e-30 UniRef50_Q6FF42 Ribosome maturation factor rimP n=21 Tax=Moraxel... 131 6e-30 UniRef50_UPI0001C31DB5 protein of unknown function DUF150 n=1 Ta... 131 6e-30 UniRef50_C4XIM4 Putative uncharacterized protein n=2 Tax=Desulfo... 131 7e-30 UniRef50_C8W721 Putative uncharacterized protein n=3 Tax=Atopobi... 131 7e-30 UniRef50_C3RL59 Putative uncharacterized protein n=4 Tax=Bacteri... 131 8e-30 UniRef50_D1B0G8 Putative uncharacterized protein n=1 Tax=Sulfuro... 131 9e-30 UniRef50_C9MWU5 UPF0090 protein n=2 Tax=Fusobacteriaceae RepID=C... 130 1e-29 UniRef50_A8F3W0 Ribosome maturation factor rimP n=1 Tax=Thermoto... 130 1e-29 UniRef50_B6W939 Putative uncharacterized protein n=1 Tax=Anaeroc... 130 1e-29 UniRef50_A7HL08 Ribosome maturation factor rimP n=1 Tax=Fervidob... 130 1e-29 UniRef50_C7NAM7 Putative uncharacterized protein n=2 Tax=Fusobac... 130 2e-29 UniRef50_A7BD83 Putative uncharacterized protein n=1 Tax=Actinom... 130 2e-29 UniRef50_A1ZEG3 15 kDa protein n=3 Tax=Sphingobacteriales RepID=... 129 3e-29 UniRef50_C1B310 Ribosome maturation factor rimP n=3 Tax=Nocardia... 128 5e-29 UniRef50_A0JUT7 Ribosome maturation factor rimP n=3 Tax=Arthroba... 128 5e-29 UniRef50_C1F695 Ribosome maturation factor rimP n=1 Tax=Acidobac... 128 5e-29 UniRef50_B0S1E8 Ribosome maturation factor rimP n=2 Tax=Finegold... 128 5e-29 UniRef50_D1VB72 Putative uncharacterized protein n=1 Tax=Frankia... 128 5e-29 UniRef50_Q0AYJ1 Ribosome maturation factor rimP n=1 Tax=Syntroph... 128 6e-29 UniRef50_A0RQZ2 Ribosome maturation factor rimP n=2 Tax=Epsilonp... 128 6e-29 UniRef50_Q2NC14 Ribosome maturation factor rimP n=2 Tax=Erythrob... 128 7e-29 UniRef50_C5RBB8 Putative uncharacterized protein n=1 Tax=Weissel... 127 8e-29 UniRef50_C1TMK4 Uncharacterized conserved protein n=1 Tax=Dethio... 127 8e-29 UniRef50_A4FM36 Ribosome maturation factor rimP n=4 Tax=Actinomy... 127 9e-29 UniRef50_B6BVK2 Putative uncharacterized protein n=1 Tax=beta pr... 127 1e-28 UniRef50_A4E6V0 Putative uncharacterized protein n=3 Tax=Collins... 127 1e-28 UniRef50_A6T0Z0 Ribosome maturation factor rimP n=7 Tax=Betaprot... 125 4e-28 UniRef50_Q2S1N5 Ribosome maturation factor rimP n=1 Tax=Saliniba... 125 5e-28 UniRef50_Q2JX22 Ribosome maturation factor rimP n=30 Tax=Cyanoba... 124 9e-28 UniRef50_Q1J5B0 Ribosome maturation factor rimP n=71 Tax=Strepto... 124 9e-28 UniRef50_Q8DHL1 Ribosome maturation factor rimP n=1 Tax=Thermosy... 123 1e-27 UniRef50_D0GIT1 Putative uncharacterized protein n=1 Tax=Leptotr... 123 2e-27 UniRef50_C0ZYA2 Ribosome maturation factor rimP n=2 Tax=Rhodococ... 123 2e-27 UniRef50_C6XFV9 Putative uncharacterized protein n=1 Tax=Candida... 123 2e-27 UniRef50_B7CAI1 Putative uncharacterized protein n=1 Tax=Eubacte... 123 2e-27 UniRef50_A0LV30 Ribosome maturation factor rimP n=1 Tax=Acidothe... 122 3e-27 UniRef50_A9BH33 Ribosome maturation factor rimP n=1 Tax=Petrotog... 122 3e-27 UniRef50_Q6A7M3 Ribosome maturation factor rimP n=2 Tax=Propioni... 122 4e-27 UniRef50_A8R7M6 Putative uncharacterized protein n=1 Tax=Eubacte... 122 5e-27 UniRef50_A5CEN4 Ribosome maturation factor rimP n=2 Tax=Orientia... 122 5e-27 UniRef50_C9Z253 Putative uncharacterized protein n=4 Tax=Strepto... 121 6e-27 UniRef50_B9Y7V3 Putative uncharacterized protein n=1 Tax=Holdema... 121 6e-27 UniRef50_C7QDY6 Putative uncharacterized protein n=1 Tax=Catenul... 121 6e-27 UniRef50_C7R3D7 Putative uncharacterized protein n=1 Tax=Jonesia... 121 6e-27 UniRef50_Q9ZM44 Ribosome maturation factor rimP n=14 Tax=Helicob... 121 7e-27 UniRef50_P59821 Ribosome maturation factor rimP n=2 Tax=Helicoba... 121 9e-27 UniRef50_C6VUJ7 Putative uncharacterized protein n=1 Tax=Dyadoba... 120 1e-26 UniRef50_D0WR24 Putative uncharacterized protein n=1 Tax=Actinom... 120 1e-26 UniRef50_A6GK80 Putative uncharacterized protein n=1 Tax=Plesioc... 119 2e-26 UniRef50_C3XJ54 Putative uncharacterized protein n=1 Tax=Helicob... 119 2e-26 UniRef50_A6GNL5 Putative uncharacterized protein n=1 Tax=Limnoba... 118 6e-26 UniRef50_Q1IZ05 Ribosome maturation factor rimP n=4 Tax=Deinococ... 117 1e-25 UniRef50_A8EYF2 Ribosome maturation factor rimP n=1 Tax=Ricketts... 117 1e-25 UniRef50_A9ITY3 Ribosome maturation factor rimP n=11 Tax=Burkhol... 117 1e-25 UniRef50_A5GVG1 Ribosome maturation factor rimP n=7 Tax=Cyanobac... 117 1e-25 UniRef50_D2QL24 Putative uncharacterized protein n=1 Tax=Spiroso... 116 2e-25 UniRef50_Q47RV4 Ribosome maturation factor rimP n=1 Tax=Thermobi... 116 2e-25 UniRef50_D1BJ69 Uncharacterized conserved protein n=1 Tax=Sangui... 116 3e-25 UniRef50_A5ZWL4 Putative uncharacterized protein n=1 Tax=Ruminoc... 115 3e-25 UniRef50_UPI0001BCD1F0 hypothetical protein AmarD1_13863 n=1 Tax... 115 4e-25 UniRef50_B2GKR8 Ribosome maturation factor rimP n=1 Tax=Kocuria ... 115 5e-25 UniRef50_B1XY65 Ribosome maturation factor rimP n=57 Tax=Burkhol... 114 8e-25 UniRef50_A3PY72 Ribosome maturation factor rimP n=18 Tax=Mycobac... 114 8e-25 UniRef50_D0LBI5 Putative uncharacterized protein n=1 Tax=Gordoni... 114 8e-25 UniRef50_B5Y930 Ribosome maturation factor rimP n=1 Tax=Coprothe... 114 8e-25 UniRef50_C7RGN7 Putative uncharacterized protein n=3 Tax=Anaeroc... 114 1e-24 UniRef50_Q1AW57 Ribosome maturation factor rimP n=1 Tax=Rubrobac... 114 1e-24 UniRef50_C2KR51 Putative uncharacterized protein n=2 Tax=Mobilun... 113 1e-24 UniRef50_C2FW05 Protein of hypothetical function DUF150 n=2 Tax=... 113 1e-24 UniRef50_C2BRP0 Putative uncharacterized protein n=1 Tax=Mobilun... 113 1e-24 UniRef50_C8PR25 Putative uncharacterized protein n=1 Tax=Trepone... 113 2e-24 UniRef50_Q30SS4 Ribosome maturation factor rimP n=2 Tax=Campylob... 113 2e-24 UniRef50_A3HY55 Putative uncharacterized protein n=1 Tax=Algorip... 113 2e-24 UniRef50_B1MD92 Ribosome maturation factor rimP n=4 Tax=Mycobact... 113 2e-24 UniRef50_C7MBA4 Uncharacterized conserved protein n=1 Tax=Brachy... 113 2e-24 UniRef50_B3QUN0 Ribosome maturation factor rimP n=1 Tax=Chlorohe... 112 4e-24 UniRef50_D1C050 Putative uncharacterized protein n=1 Tax=Xylanim... 112 4e-24 UniRef50_Q04GN4 Ribosome maturation factor rimP n=2 Tax=Oenococc... 112 4e-24 UniRef50_C7I1W8 Putative uncharacterized protein n=1 Tax=Thiomon... 112 5e-24 UniRef50_Q0I7K5 Ribosome maturation factor rimP n=8 Tax=Chroococ... 111 7e-24 UniRef50_UPI000185BE37 conserved hypothetical protein n=1 Tax=Co... 110 1e-23 UniRef50_A9BCI2 Ribosome maturation factor rimP n=2 Tax=Prochlor... 110 1e-23 UniRef50_D1B5D8 Putative uncharacterized protein n=1 Tax=Therman... 110 1e-23 UniRef50_C1RGC3 Uncharacterized conserved protein n=1 Tax=Cellul... 110 2e-23 UniRef50_Q72KG3 Ribosome maturation factor rimP n=3 Tax=Thermace... 110 2e-23 UniRef50_B1X3N5 Putative uncharacterized protein n=1 Tax=Pauline... 108 6e-23 Sequences not found previously or not previously below threshold: >UniRef50_C9R8Y0 Putative uncharacterized protein n=1 Tax=Ammonifex degensii KC4 RepID=C9R8Y0_AMMDK Length = 161 Score = 188 bits (478), Expect = 5e-47, Method: Composition-based stats. Identities = 58/149 (38%), Positives = 87/149 (58%), Gaps = 1/149 (0%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAV 61 + + ++ + E LG ELV +E+ + G LR++ID G+ +DDC +S + Sbjct: 6 KVVEVVSRLAEPLAERLGLELVDVEYKKEGGRWVLRVFIDKPSGVTLDDCEALSEALGEA 65 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 LDVEDPI +Y+LEVSSPG++RPL H+ RFVG EV + V+ +R++ GV+ A D Sbjct: 66 LDVEDPIPHSYSLEVSSPGVERPLKKPAHFQRFVGREVRVSTLAPVEGQRRFTGVLLAAD 125 Query: 122 GEMITVTVEGKDEVFALSNIQKANLVPHF 150 E I + +GK+ I KANLV + Sbjct: 126 EEGIRLETDGKELDLPYRLIAKANLVFRW 154 >UniRef50_A4WEY5 Ribosome maturation factor rimP n=181 Tax=Proteobacteria RepID=RIMP_ENT38 Length = 160 Score = 186 bits (473), Expect = 2e-46, Method: Composition-based stats. Identities = 138/150 (92%), Positives = 144/150 (96%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSA 60 +STLEQKLTEMI APVEALG+ELVGIEFIR RTSTLRIYIDSEDGINVDDCADVSHQVSA Sbjct: 11 LSTLEQKLTEMIKAPVEALGYELVGIEFIRSRTSTLRIYIDSEDGINVDDCADVSHQVSA 70 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 VLDVEDPITVAYNLEVSSPGL RP+FTAEHY ++GEEV +VLRMAVQNRRKWQGVIKAV Sbjct: 71 VLDVEDPITVAYNLEVSSPGLHRPMFTAEHYTHYIGEEVAVVLRMAVQNRRKWQGVIKAV 130 Query: 121 DGEMITVTVEGKDEVFALSNIQKANLVPHF 150 DGEMITVTVEGKDEVFALSNIQKANLVPHF Sbjct: 131 DGEMITVTVEGKDEVFALSNIQKANLVPHF 160 >UniRef50_A1ST43 Ribosome maturation factor rimP n=90 Tax=Gammaproteobacteria RepID=RIMP_PSYIN Length = 153 Score = 184 bits (469), Expect = 6e-46, Method: Composition-based stats. Identities = 95/151 (62%), Positives = 125/151 (82%), Gaps = 1/151 (0%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVS 59 M++LE++LTEM+ VE LG+ELVG+E+IR G+ STLR+YID ++GI VDDCA VS QVS Sbjct: 1 MASLEERLTEMLAPSVEDLGYELVGVEYIRAGKHSTLRVYIDQDEGILVDDCAAVSRQVS 60 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 A++DVEDPIT Y+LEVSSPG++RPLF AEHY F GEEV + LRM +QNRR+W+GVI + Sbjct: 61 AIMDVEDPITNEYSLEVSSPGMNRPLFKAEHYQIFAGEEVKIQLRMPIQNRRRWKGVIVS 120 Query: 120 VDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 + E+I + +EG++E F+LSNIQKAN+VP F Sbjct: 121 AEDEIICLNIEGREERFSLSNIQKANIVPKF 151 >UniRef50_C8X0H0 Putative uncharacterized protein n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X0H0_DESRD Length = 157 Score = 182 bits (464), Expect = 3e-45, Method: Composition-based stats. Identities = 59/147 (40%), Positives = 94/147 (63%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVL 62 L ++L+E+I + G ++ G+E R LR+Y+DS +G+++D CA +S +S L Sbjct: 4 KLYERLSELIKPLAASCGLDVWGMEIPASRGGVLRVYVDSPNGVSIDQCATLSRHISVTL 63 Query: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 DVEDP+ Y LEVSSPGL+RP FT ++G+ V L L+ +Q R+KW+GV+ +G Sbjct: 64 DVEDPLPGPYTLEVSSPGLERPFFTVSQLPPYIGQPVALKLQAPMQGRKKWRGVLIEAEG 123 Query: 123 EMITVTVEGKDEVFALSNIQKANLVPH 149 + +T+ V+G + VFA +++KA LV Sbjct: 124 DHLTLDVDGVEHVFAWEDVEKARLVFQ 150 >UniRef50_B1I359 Ribosome maturation factor rimP n=4 Tax=Clostridiales RepID=RIMP_DESAP Length = 154 Score = 179 bits (456), Expect = 2e-44, Method: Composition-based stats. Identities = 53/151 (35%), Positives = 77/151 (50%), Gaps = 2/151 (1%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSA 60 S + ++ EM E G ELV ++++ G LR+++D GIN+DDC VS ++ Sbjct: 4 SDIAGRVEEMARPLAERKGLELVEVQYVTEGGRRYLRVFLDKPGGINLDDCEAVSRELDR 63 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 LD D I +Y LEVSSPGL+RPL AE Y RF G V + + R+K+ G + Sbjct: 64 ALDDVDFIPHSYVLEVSSPGLERPLKRAEDYVRFKGRLVQINTYAPLNGRKKFSGRLMGS 123 Query: 121 DGEMITVTVEGKDE-VFALSNIQKANLVPHF 150 E +T+ + + I KA L F Sbjct: 124 GEEGVTILLGEHELATIPWDQISKARLAVEF 154 >UniRef50_Q0A795 Ribosome maturation factor rimP n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=RIMP_ALHEH Length = 152 Score = 179 bits (455), Expect = 2e-44, Method: Composition-based stats. Identities = 67/151 (44%), Positives = 91/151 (60%), Gaps = 2/151 (1%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVS 59 M+ E L +I + +G+ELVGIE+ LRIYIDS DGI +DDC S Q+S Sbjct: 1 MAATEDTLYALIDPLLTGMGYELVGIEYGGPAGKRLLRIYIDSPDGITLDDCETCSRQIS 60 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 AVLDVEDPI Y LE+SSPGLDRP+F A Y RF GE++ + L + RR+++GV+ Sbjct: 61 AVLDVEDPIPGEYTLEISSPGLDRPIFKASDYDRFAGEQIKIRLSAPWEGRRRFKGVLAG 120 Query: 120 VDGEMI-TVTVEGKDEVFALSNIQKANLVPH 149 + E + V +G + L I+KA L+ Sbjct: 121 LGDEGVRVVEAQGDEVQIPLDLIEKARLILE 151 >UniRef50_Q2RJM9 Ribosome maturation factor rimP n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=RIMP_MOOTA Length = 158 Score = 178 bits (453), Expect = 4e-44, Method: Composition-based stats. Identities = 56/151 (37%), Positives = 83/151 (54%), Gaps = 2/151 (1%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVS 59 MS L + E++ + +G+ELV +++ R G LR++ID +GI +DDC VS VS Sbjct: 1 MSKLTALIQELVEPLLTPMGYELVDLQYGREGGRYILRLFIDRPEGIGLDDCEQVSRVVS 60 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 A+LD +DPI +Y LEVSSPGL+RPL + RF G +V L + +R +QG + Sbjct: 61 ALLDEKDPIPHSYYLEVSSPGLERPLKKEADFNRFAGRKVKLRTFAPINGQRHFQGRLLG 120 Query: 120 VDGEMITVTV-EGKDEVFALSNIQKANLVPH 149 + + + EG D L + A LV Sbjct: 121 YQDGQVRMHLEEGWDLAIPLEQVATARLVFD 151 >UniRef50_Q5WT34 Ribosome maturation factor rimP n=5 Tax=Legionella RepID=RIMP_LEGPL Length = 147 Score = 177 bits (451), Expect = 8e-44, Method: Composition-based stats. Identities = 63/146 (43%), Positives = 92/146 (63%), Gaps = 1/146 (0%) Query: 4 LEQKLTEMITAPVEALGFELVGIEF-IRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVL 62 + L ++ ++ +G+EL G E+ +G+ S LRIYID DGI +DDC +VS QVSA+L Sbjct: 2 INDDLIVLLEPIIKNMGYELWGCEYLSQGKHSLLRIYIDKPDGIGIDDCQEVSKQVSAML 61 Query: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 DVEDPI Y+LE+SSPG+ RPLF+ Y R++G E+ + V +RK G+I + G Sbjct: 62 DVEDPIPGHYSLEISSPGIPRPLFSIWQYQRYLGYEIHVKTFKPVNGKRKLSGIIVSASG 121 Query: 123 EMITVTVEGKDEVFALSNIQKANLVP 148 + I + + + + LSNI KANL Sbjct: 122 DTIVLDINNEHQEILLSNIVKANLTV 147 >UniRef50_B5JRQ8 Putative uncharacterized protein n=2 Tax=Gammaproteobacteria RepID=B5JRQ8_9GAMM Length = 159 Score = 177 bits (450), Expect = 1e-43, Method: Composition-based stats. Identities = 66/151 (43%), Positives = 97/151 (64%), Gaps = 1/151 (0%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGRTS-TLRIYIDSEDGINVDDCADVSHQVS 59 M +K +I V+ LG+ELVG++F + L +YID ++G+N+DDCA +S +VS Sbjct: 1 MQHKARKEWSLIEPVVQDLGYELVGVDFRANASPAVLCVYIDRDEGVNIDDCAKISREVS 60 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 AVLDVEDPIT AYNLEVSSPGLDRPLF + ++ G + L + + RR ++G + Sbjct: 61 AVLDVEDPITSAYNLEVSSPGLDRPLFRESDFVKYKGHLAKVKLSIPYEERRNFKGQLNG 120 Query: 120 VDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 V+ M+ + V+ ++ + I+KANLVP F Sbjct: 121 VEDGMVLLIVDNEEYLLPYEQIEKANLVPQF 151 >UniRef50_Q31GK7 Ribosome maturation factor rimP n=2 Tax=Gammaproteobacteria RepID=RIMP_THICR Length = 151 Score = 176 bits (448), Expect = 1e-43, Method: Composition-based stats. Identities = 71/150 (47%), Positives = 98/150 (65%), Gaps = 2/150 (1%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSED-GINVDDCADVSHQVSA 60 TLE K+ ++ +E +GF+ G E++ G+ STLRIYID ++ G+ VDDC VS QVSA Sbjct: 2 TLEDKIENLLRPTIETMGFQFWGCEYLPAGKHSTLRIYIDKDEVGVTVDDCGKVSRQVSA 61 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 ++DVEDPI+ AY LEVSSPG+DRPLF E Y + G+EV + V R++++GV+ V Sbjct: 62 IMDVEDPISNAYMLEVSSPGMDRPLFHPEQYKAYEGQEVQVRTSSPVMGRKRFKGVMSQV 121 Query: 121 DGEMITVTVEGKDEVFALSNIQKANLVPHF 150 I V V+G+ S I KAN+VP F Sbjct: 122 SESDIAVEVDGELYEIPFSLIDKANVVPQF 151 >UniRef50_Q09BT8 YlxS n=1 Tax=Stigmatella aurantiaca DW4/3-1 RepID=Q09BT8_STIAU Length = 249 Score = 176 bits (448), Expect = 2e-43, Method: Composition-based stats. Identities = 58/154 (37%), Positives = 84/154 (54%), Gaps = 5/154 (3%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGR-TSTLRIYIDSEDG-INVDDCADVSHQVS 59 T+E++ ++ V G EL+ +EF+R R LR++ID G + +D+C+ VS V Sbjct: 96 QTVEERAMTLLEPIVAGEGLELIDLEFVREREGWVLRLFIDKPGGRVGLDECSQVSRAVD 155 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQN--RRKWQGVI 117 LDVED + YNLEVSSPG++RPL HY R G++V + + + R+ + G + Sbjct: 156 PALDVEDLVPNEYNLEVSSPGVNRPLKKLSHYERVKGQKVKVKTFGPIGDPPRKNFSGTL 215 Query: 118 KAVDGEMITVTVEG-KDEVFALSNIQKANLVPHF 150 V E I V VEG L +I KANL F Sbjct: 216 TEVTAEGIAVEVEGAGAFRIPLKDIAKANLEFEF 249 >UniRef50_D0L0S8 Putative uncharacterized protein n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L0S8_HALNC Length = 166 Score = 176 bits (447), Expect = 2e-43, Method: Composition-based stats. Identities = 65/152 (42%), Positives = 96/152 (63%), Gaps = 2/152 (1%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSA 60 M + + + ++ VEA G VG EF G LR+YID+E G+ +DDC VS +S Sbjct: 1 MQKIPESIEALLQPVVEAAGCAWVGGEFRGGPDGLLRVYIDTEAGVTLDDCTKVSDALSG 60 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 VLDVEDP Y LEVSSPG++RP+F A +A F+G++V + L + RR+++G++ AV Sbjct: 61 VLDVEDPFPGFYRLEVSSPGVERPMFRASDFALFIGQKVHVRLHRPLAQRRRFEGIVSAV 120 Query: 121 DGEMITVTVEGKD--EVFALSNIQKANLVPHF 150 DGE I++++EG F S +++ANLV F Sbjct: 121 DGEQISLSIEGDQDVFTFPFSEVERANLVFEF 152 >UniRef50_B8FR10 Ribosome maturation factor rimP n=2 Tax=Desulfitobacterium hafniense RepID=RIMP_DESHD Length = 152 Score = 175 bits (446), Expect = 3e-43, Method: Composition-based stats. Identities = 56/149 (37%), Positives = 87/149 (58%), Gaps = 1/149 (0%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAV 61 ++ +++ +I + G ELV +E+++ G LRIYID E G+++DDC +VSH VS V Sbjct: 4 SIMEQVEAIIAPVITEQGLELVDVEYVKEGAHWYLRIYIDKEGGVDIDDCTNVSHLVSEV 63 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 LD DPI AY LEVSSPGL+RPL E + RF G+ V ++ + Q +++ G + + Sbjct: 64 LDKHDPIAQAYMLEVSSPGLERPLKKDEDFERFTGKLVRVLTKEVYQGYKEFTGYLVGLI 123 Query: 122 GEMITVTVEGKDEVFALSNIQKANLVPHF 150 + I + E + + + KANL F Sbjct: 124 EDDIVLEYEKERMAIPRAIVDKANLTFEF 152 >UniRef50_Q3AB94 Ribosome maturation factor rimP n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=RIMP_CARHZ Length = 154 Score = 175 bits (445), Expect = 3e-43, Method: Composition-based stats. Identities = 49/150 (32%), Positives = 82/150 (54%), Gaps = 1/150 (0%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTST-LRIYIDSEDGINVDDCADVSHQVSA 60 +EQK+ + L E+V +EF++ LRIYID ++G+++DDC + S ++ Sbjct: 5 KGIEQKVWPLAERVGGELNLEVVDVEFVKEAGRYFLRIYIDKDEGVDLDDCQNFSERIGV 64 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 +LD EDPI +Y LEVSSPG++RPL + +F G E + A++ +++++G + V Sbjct: 65 ILDEEDPIPQSYYLEVSSPGIERPLKKLADFEKFAGREAQIKTFAAIEGQKQFKGKLLGV 124 Query: 121 DGEMITVTVEGKDEVFALSNIQKANLVPHF 150 + + + L I KANL F Sbjct: 125 RDGQVVIDAGKGEVQIPLEQIAKANLTFDF 154 >UniRef50_B8GP00 Ribosome maturation factor rimP n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=RIMP_THISH Length = 154 Score = 174 bits (443), Expect = 6e-43, Method: Composition-based stats. Identities = 63/141 (44%), Positives = 93/141 (65%), Gaps = 1/141 (0%) Query: 7 KLTEMITAPVEALGFELVGIEFIRGRTS-TLRIYIDSEDGINVDDCADVSHQVSAVLDVE 65 +L ++ V +G++L G+EF + S LR++IDSE GI +DDC +VS QVSA++DVE Sbjct: 2 QLKALLEPLVTRMGYQLWGMEFRVAKHSALLRLFIDSEQGITLDDCTEVSRQVSALMDVE 61 Query: 66 DPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMI 125 DPI V Y LEVSSPG+DRPLF A YAR+VGE+V + + + +R + G I + D + + Sbjct: 62 DPIQVPYTLEVSSPGVDRPLFEAGQYARYVGEQVRVRTQWPIDGQRNFAGAIVSADEDSV 121 Query: 126 TVTVEGKDEVFALSNIQKANL 146 T+ V+G++ L I + L Sbjct: 122 TLDVDGREVRLPLEAIARGRL 142 >UniRef50_Q15V74 Ribosome maturation factor rimP n=8 Tax=Gammaproteobacteria RepID=RIMP_PSEA6 Length = 152 Score = 174 bits (442), Expect = 8e-43, Method: Composition-based stats. Identities = 93/151 (61%), Positives = 119/151 (78%), Gaps = 1/151 (0%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVS 59 MS LEQKLTEM+TAPVEALGFE+VGIEF+R G+ ST+R+YID DGI+VD CA+VSHQVS Sbjct: 1 MSQLEQKLTEMLTAPVEALGFEMVGIEFVRAGKHSTMRVYIDHPDGISVDHCAEVSHQVS 60 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 AVLDVEDPI YNLEVSSPG++RPLF +HY VGE VTL L+M + +RR ++G + + Sbjct: 61 AVLDVEDPINTEYNLEVSSPGMERPLFKLQHYIESVGEVVTLRLKMPMGDRRNFKGKLLS 120 Query: 120 VDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 M+T+ V+ ++ V A +NI+K N+VP F Sbjct: 121 EADGMLTIEVDNQEFVLAFANIEKGNVVPTF 151 >UniRef50_A9N8V8 Ribosome maturation factor rimP n=6 Tax=Coxiella burnetii RepID=RIMP_COXBR Length = 153 Score = 174 bits (442), Expect = 8e-43, Method: Composition-based stats. Identities = 75/152 (49%), Positives = 104/152 (68%), Gaps = 3/152 (1%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIE-FIRGRTSTLRIYIDSEDGINVDDCADVSHQVS 59 MS + L +I VEALGFELVG E F RG T+ L++++D GI +D+CA VS Q+S Sbjct: 1 MSQ-ARTLHRLIAPAVEALGFELVGCELFRRGATTILQVFVDKPGGIGLDECAKVSRQIS 59 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 AVLDVEDPI Y LEVSSPGL+RPL+TA HY RF+G + + LR + +R+++G++ A Sbjct: 60 AVLDVEDPIRGRYTLEVSSPGLERPLYTANHYRRFIGNKAKIRLREPREGQRQFRGMVVA 119 Query: 120 VD-GEMITVTVEGKDEVFALSNIQKANLVPHF 150 VD E +T+ ++ K +L I+KANL+ F Sbjct: 120 VDNEEQVTLQLDNKILKVSLGEIEKANLIADF 151 >UniRef50_Q3J9B4 Ribosome maturation factor rimP n=4 Tax=Gammaproteobacteria RepID=RIMP_NITOC Length = 151 Score = 172 bits (437), Expect = 3e-42, Method: Composition-based stats. Identities = 65/147 (44%), Positives = 102/147 (69%), Gaps = 2/147 (1%) Query: 5 EQKLTEMITAPVEALGFELVGIEFIR--GRTSTLRIYIDSEDGINVDDCADVSHQVSAVL 62 +++++E++ V ALG+ELVG+E + G+ + LRIYID+ GI +DDC SHQ+SA+L Sbjct: 4 DRRISELVEPVVAALGYELVGVERLSSVGKGALLRIYIDTPSGITIDDCERASHQISALL 63 Query: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 DVE+ + AY LE+SSPGL+RPLFT EH+ RF G E ++ L + RR+++G+++ + G Sbjct: 64 DVEELMASAYTLEISSPGLNRPLFTEEHFKRFTGVEASITLSKPLNGRREFKGLLRGIRG 123 Query: 123 EMITVTVEGKDEVFALSNIQKANLVPH 149 + + + V G++ L I+KA LVP Sbjct: 124 DRVVILVAGEEFELPLEGIKKARLVPE 150 >UniRef50_A4XL73 Ribosome maturation factor rimP n=2 Tax=Clostridia RepID=RIMP_CALS8 Length = 151 Score = 171 bits (435), Expect = 5e-42, Method: Composition-based stats. Identities = 54/151 (35%), Positives = 87/151 (57%), Gaps = 1/151 (0%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVS 59 MS + +K+ E++ +E GF+LV IEF + G+ LR+YID GI +DDC VS ++S Sbjct: 1 MSKVTKKVEELVKPILEKYGFDLVDIEFKKEGKKHFLRVYIDKPGGITIDDCQLVSEELS 60 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 LD+ DPI +Y LEVSSPG+DRPL + R G V + L+ + N K G + Sbjct: 61 NKLDIVDPIPFSYYLEVSSPGVDRPLVNDRDFIRNKGRVVDVFLKQPIMNTTKLTGELVE 120 Query: 120 VDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 + +++ + ++G++ N++K + F Sbjct: 121 KNEDVLIIMIDGENISIPFENVKKVKVAIRF 151 >UniRef50_B5YEH1 Ribosome maturation factor rimP n=2 Tax=Dictyoglomus RepID=RIMP_DICT6 Length = 156 Score = 171 bits (434), Expect = 6e-42, Method: Composition-based stats. Identities = 56/149 (37%), Positives = 87/149 (58%), Gaps = 1/149 (0%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIRGRT-STLRIYIDSEDGINVDDCADVSHQVSAV 61 +KL E++ E +ELV +E+ R LR+YID G+ V+DCA +S ++S Sbjct: 8 EFYKKLKEIVEPICEKYSYELVDLEYRREPHGWVLRVYIDKVGGVTVEDCAYLSEKISKE 67 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 LD++DPI +Y LEVSSPGLDRPL + R +GE+V + L ++ ++K++G I VD Sbjct: 68 LDIKDPIPHSYILEVSSPGLDRPLKRKRDFERHMGEKVNITLLEEIEGKKKFEGKIFKVD 127 Query: 122 GEMITVTVEGKDEVFALSNIQKANLVPHF 150 +T+ ++ L I+KA L+ F Sbjct: 128 ESSVTLKIDDSFVTIPLEKIKKAMLIVEF 156 >UniRef50_B0K1E0 Ribosome maturation factor rimP n=18 Tax=Clostridia RepID=RIMP_THEPX Length = 151 Score = 171 bits (434), Expect = 7e-42, Method: Composition-based stats. Identities = 57/151 (37%), Positives = 85/151 (56%), Gaps = 1/151 (0%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVS 59 MS +EQ +++ +E FELV +E+ + G LR+YID E GI +DDC VS +S Sbjct: 1 MSKIEQIAKDLVMPILEKNNFELVDVEYKKEGSHWYLRVYIDKEGGITLDDCQLVSEYLS 60 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 LD DPI +Y LEVSSPGLDRPL + R +G+E+ + L + R+K++G + Sbjct: 61 DRLDEVDPIEHSYILEVSSPGLDRPLKKPRDFERNIGKEIEISLYTPIDKRKKFEGELIE 120 Query: 120 VDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 G+ I + G+ + F + N+ V F Sbjct: 121 FTGDKIIILYNGERKEFDMKNVSLVKPVIKF 151 >UniRef50_A6NTX5 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NTX5_9BACE Length = 151 Score = 170 bits (433), Expect = 8e-42, Method: Composition-based stats. Identities = 51/149 (34%), Positives = 79/149 (53%), Gaps = 1/149 (0%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGRT-STLRIYIDSEDGINVDDCADVSHQVS 59 M+ + + + + G + +E++R LR+Y+D E G+N+DDC VS +S Sbjct: 1 MAKVTELVRALAQPIAAENGCSIWDVEYVREAGTWFLRVYLDKEGGVNIDDCEAVSRPLS 60 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 LD DPI +Y LEVSS G+DR L EH+ F+G EV + L V+ R+ G++KA Sbjct: 61 DALDEADPIEGSYTLEVSSAGIDRVLRHPEHFDAFLGAEVEVRLYRPVEGRKDHVGLLKA 120 Query: 120 VDGEMITVTVEGKDEVFALSNIQKANLVP 148 D +TVT+ D F ++ + L Sbjct: 121 YDNGDVTVTLPSGDVTFPKKDVAQVRLYV 149 >UniRef50_A7H9F0 Ribosome maturation factor rimP n=5 Tax=Myxococcaceae RepID=RIMP_ANADF Length = 171 Score = 170 bits (432), Expect = 1e-41, Method: Composition-based stats. Identities = 51/156 (32%), Positives = 80/156 (51%), Gaps = 8/156 (5%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAV 61 ++ ++ ++ + G+ELV +E++R G TLR+++D G+ ++DC VS V + Sbjct: 8 SIAERTRRVLEPVLARDGYELVEVEWLRQGSRWTLRLFVDKPGGVGIEDCQAVSRLVDPI 67 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQN-------RRKWQ 114 LDVED I AY+LEVSSPGLDRPL + R+ G+ + V R+ W Sbjct: 68 LDVEDFIEPAYDLEVSSPGLDRPLRKPADFDRYAGQRAHVKAYGPVAGTAPGSPARKNWT 127 Query: 115 GVIKAVDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 GV+ + + V+G I KA+L F Sbjct: 128 GVLVGYRDGAVEIDVDGVVHRVPHDQIAKAHLEYDF 163 >UniRef50_B9ZLN5 Putative uncharacterized protein n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZLN5_9GAMM Length = 151 Score = 170 bits (431), Expect = 1e-41, Method: Composition-based stats. Identities = 61/147 (41%), Positives = 84/147 (57%), Gaps = 1/147 (0%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGRTST-LRIYIDSEDGINVDDCADVSHQVS 59 M+ ++L ++ VE GF G+E+ G LRIYIDS +G+ VDDCA VS Q Sbjct: 1 MAEKPEQLKTLLAPVVEGQGFVFWGLEYHPGSKPVMLRIYIDSPEGVTVDDCALVSEQAG 60 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 AVL+VE + Y LEVSSPG++RPLFT + Y ++G V + L RR ++G + Sbjct: 61 AVLEVEQALRGNYTLEVSSPGIERPLFTPDQYRGYIGHPVKVRLSWPEHGRRNYRGTLIG 120 Query: 120 VDGEMITVTVEGKDEVFALSNIQKANL 146 VD EMI V V+G L+ I A + Sbjct: 121 VDEEMIEVEVDGTGYELPLNAIHNARV 147 >UniRef50_B0THQ9 Ribosome maturation factor rimP n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=RIMP_HELMI Length = 154 Score = 168 bits (427), Expect = 4e-41, Method: Composition-based stats. Identities = 52/149 (34%), Positives = 82/149 (55%), Gaps = 1/149 (0%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAV 61 LE +++ VE LG EL+ +E+++ G LRI+ID E GI ++DC +VS ++ + Sbjct: 6 RLEDRVSAWAMPIVEELGLELIDVEWVKEGGNWYLRIFIDKEAGIEMEDCQEVSRRIDEI 65 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 LD EDP+ +Y+LEVSSPG+DRPL + Y RF GE V + V ++ G + + Sbjct: 66 LDREDPVAHSYSLEVSSPGIDRPLKSDRDYERFRGETVRITTFAPVMGAKEHLGELAGKN 125 Query: 122 GEMITVTVEGKDEVFALSNIQKANLVPHF 150 I + ++ L+ + L P F Sbjct: 126 ETSILIRKNDEEMAIPLTQVSSVRLYPGF 154 >UniRef50_B0TQA4 Ribosome maturation factor rimP n=34 Tax=Gammaproteobacteria RepID=RIMP_SHEHH Length = 151 Score = 168 bits (426), Expect = 6e-41, Method: Composition-based stats. Identities = 83/151 (54%), Positives = 112/151 (74%), Gaps = 1/151 (0%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVS 59 M+TLE+KL EM+ APVEALG +L G+E+I+ G+ S LR+YID+E GI ++DCA+ S QVS Sbjct: 1 MATLERKLVEMLKAPVEALGHQLWGLEYIQAGKHSILRLYIDNEKGIFIEDCAEASRQVS 60 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 AVLDVEDPIT Y LEVSSPG++R LFTAE Y ++GE V + L M V R +G + Sbjct: 61 AVLDVEDPITSEYTLEVSSPGVERLLFTAEQYKAYIGETVKVQLTMPVAGSRNLKGTVTG 120 Query: 120 VDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 VDG+M+ ++V+G + + AL NI+K NL+ F Sbjct: 121 VDGQMLNLSVDGNELIVALDNIRKGNLIAKF 151 >UniRef50_B2A393 Ribosome maturation factor rimP n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=RIMP_NATTJ Length = 154 Score = 168 bits (426), Expect = 6e-41, Method: Composition-based stats. Identities = 47/145 (32%), Positives = 79/145 (54%), Gaps = 2/145 (1%) Query: 7 KLTEMITAPVEALGFELVGIE-FIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVE 65 ++ +I V LG++LV +E + + LR+YID GI +DDC VS+ + +LD Sbjct: 9 QIENIIEPAVRDLGYDLVDVELIMENQKWVLRVYIDHGKGIGLDDCELVSNSLDQLLDEH 68 Query: 66 DPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMI 125 DPI +Y LEVSSPG +RPL + + F G++V + + + R+ ++G + ++ E + Sbjct: 69 DPIPHSYVLEVSSPGAERPLKKKKDFVNFAGKKVQIKTYVKLDGRKNFKGKLLGLEDEHV 128 Query: 126 TVTV-EGKDEVFALSNIQKANLVPH 149 + + L I KANL+ Sbjct: 129 VLETFNSGEVKIPLDKIAKANLLLE 153 >UniRef50_C6D2F6 Putative uncharacterized protein n=3 Tax=Bacillales RepID=C6D2F6_PAESJ Length = 153 Score = 167 bits (425), Expect = 7e-41, Method: Composition-based stats. Identities = 53/150 (35%), Positives = 87/150 (58%), Gaps = 1/150 (0%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSA 60 S ++ + M+T +++ GFELV IE+++ G LR+++D E GI++D+C VS +S Sbjct: 4 SKIKTVVEAMVTPFLDSNGFELVDIEYVKEGSNYFLRVFVDKEGGIDIDECGKVSEFLSE 63 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 LD DP++ AY LEVSSPG +RPL + + VG+ V + + ++++G + A Sbjct: 64 ELDKNDPVSDAYFLEVSSPGAERPLKKPDDVRKAVGKHVYITTYEPIDGSKEFEGQLTAF 123 Query: 121 DGEMITVTVEGKDEVFALSNIQKANLVPHF 150 DGE TV + K+ V + + A L F Sbjct: 124 DGEQATVKIGKKEHVIPYAKVASARLAIVF 153 >UniRef50_Q30WJ2 Ribosome maturation factor rimP n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=RIMP_DESDG Length = 173 Score = 167 bits (425), Expect = 8e-41, Method: Composition-based stats. Identities = 63/160 (39%), Positives = 95/160 (59%), Gaps = 11/160 (6%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAV 61 +T+ ++L E+IT + + EL G++FI+G + LRIYID DG+ +D CA VS + Sbjct: 6 TTIHEQLLEIITPVIRSFDLELWGMDFIQGGKAVLRIYIDGPDGVTIDQCATVSRHIGLA 65 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMA---VQNRRKWQGVIK 118 L+VED I AYNLEVSSPGL+RPLF+A A + G + LVLR R+K+ GV+ Sbjct: 66 LEVEDIIAGAYNLEVSSPGLERPLFSAAQLAAYKGHKAELVLRAPCAQFPGRKKFTGVVG 125 Query: 119 AVDGEMITVTVE--------GKDEVFALSNIQKANLVPHF 150 V+GE T+ ++ ++ +++KA L+ F Sbjct: 126 NVEGENFTLQIDPLKGGDNLQEELSAHWDDVKKARLIYDF 165 >UniRef50_B1J268 Ribosome maturation factor rimP n=21 Tax=Gammaproteobacteria RepID=RIMP_PSEPW Length = 169 Score = 167 bits (424), Expect = 1e-40, Method: Composition-based stats. Identities = 69/150 (46%), Positives = 102/150 (68%), Gaps = 1/150 (0%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFI-RGRTSTLRIYIDSEDGINVDDCADVSHQVSA 60 S+ ++L ++ VE LG++ GIE++ +G+ S LRIYID E GI V+DC VS Q SA Sbjct: 19 SSKLEQLQALLAPVVEGLGYQCWGIEYVSQGKHSVLRIYIDKEGGILVEDCEAVSRQASA 78 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 +LDVEDPI+ Y LEVSSPG+DRPLFT E +A GE+V + LR + RR +QG+++ V Sbjct: 79 ILDVEDPISSEYTLEVSSPGMDRPLFTLEQFASHAGEQVKIKLRTPFEGRRNFQGLLRGV 138 Query: 121 DGEMITVTVEGKDEVFALSNIQKANLVPHF 150 + + + V V+ + + + +I KAN++P F Sbjct: 139 EEQDVVVQVDSHEFLLPIDSIDKANIIPSF 168 >UniRef50_A8PNL6 15 kDa protein n=1 Tax=Rickettsiella grylli RepID=A8PNL6_9COXI Length = 153 Score = 167 bits (424), Expect = 1e-40, Method: Composition-based stats. Identities = 63/150 (42%), Positives = 94/150 (62%), Gaps = 1/150 (0%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVS 59 M + ++ +EALG+EL ++R G+ + LRIYIDSE GI + DC VS QV Sbjct: 1 MIRNNSAIEARLSPTIEALGYELWACVYLREGQKNRLRIYIDSEKGITLSDCERVSRQVG 60 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 A+LDVED + Y+LEVSSPGLDRPL +H+ R+VG + + L+ + N+RK++G++++ Sbjct: 61 ALLDVEDLLQGHYHLEVSSPGLDRPLIKEDHFQRYVGYPIHVFLQSPIDNQRKFKGLLQS 120 Query: 120 VDGEMITVTVEGKDEVFALSNIQKANLVPH 149 I + EGK+ V NI AN++P Sbjct: 121 TRASGIVLNREGKEFVLTWDNILHANVLPK 150 >UniRef50_Q1NIJ0 Putative uncharacterized protein n=2 Tax=Deltaproteobacteria RepID=Q1NIJ0_9DELT Length = 155 Score = 165 bits (418), Expect = 5e-40, Method: Composition-based stats. Identities = 57/150 (38%), Positives = 84/150 (56%), Gaps = 1/150 (0%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGR-TSTLRIYIDSEDGINVDDCADVSHQVSA 60 L +LTE++ VE G EL ++F R LR+ ID +DG+ +DDC +S +VS Sbjct: 6 KALSARLTELLQPVVEDHGLELADLQFRREPAGWVLRLVIDGDDGVTLDDCTRISREVSH 65 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 +L+VEDPI A+NLEVSSPGLDRPL + Y R G + LV R + G I + Sbjct: 66 LLEVEDPIEQAFNLEVSSPGLDRPLKREQDYRRCRGRKAKLVCREPIAGEPVVIGEIGEM 125 Query: 121 DGEMITVTVEGKDEVFALSNIQKANLVPHF 150 +++T+ E L+ +++A LV + Sbjct: 126 AEQVVTIITEAGPVAVPLAQVKRARLVIEW 155 >UniRef50_B8CW69 Ribosome maturation factor rimP n=1 Tax=Halothermothrix orenii H 168 RepID=RIMP_HALOH Length = 159 Score = 165 bits (418), Expect = 5e-40, Method: Composition-based stats. Identities = 52/154 (33%), Positives = 85/154 (55%), Gaps = 4/154 (2%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDG-INVDDCADVSHQV 58 M + ++ ++ VE+ G ELV +E+++ G LR++I++ +G + +D C +VS + Sbjct: 1 MGKITDRVEDLAQPIVESQGLELVDVEYVKEGENRVLRVFIENPEGEVTLDHCENVSKNL 60 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 LD DPI +Y LEVSSPG++RPL E + RF G+ + V ++ G+IK Sbjct: 61 DEKLDEVDPIQESYILEVSSPGIERPLKKKEDFDRFSGKLAYIKTFAPVSGNKEITGIIK 120 Query: 119 AVDGEMITV--TVEGKDEVFALSNIQKANLVPHF 150 DG+ I V + K+ S I KA+L+ F Sbjct: 121 GRDGDNIKVLKKDDDKELEIPFSQIAKAHLMVDF 154 >UniRef50_A6VU27 Ribosome maturation factor rimP n=18 Tax=Gammaproteobacteria RepID=RIMP_MARMS Length = 153 Score = 164 bits (417), Expect = 6e-40, Method: Composition-based stats. Identities = 76/153 (49%), Positives = 103/153 (67%), Gaps = 3/153 (1%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYI--DSEDGINVDDCADVSHQ 57 MS L E+I VE LGFE G+E++ G+ S LRIYI D+E GI+V+DCA VS Q Sbjct: 1 MSAKYTILEELIRPVVEGLGFEFWGMEYLSLGKDSVLRIYIETDAEKGIDVEDCARVSRQ 60 Query: 58 VSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI 117 VS++LDVEDPIT YNLEVSSPGLDRPLF+ Y ++G V+L LR+ RRK++G + Sbjct: 61 VSSILDVEDPITGEYNLEVSSPGLDRPLFSLAQYQAYIGSIVSLRLRVPFDGRRKFKGQL 120 Query: 118 KAVDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 ++ E I + V+ ++ + + I KAN+VP F Sbjct: 121 MGIESEDIVIRVDQEEYLLPIDLIDKANVVPQF 153 >UniRef50_A1AML8 Ribosome maturation factor rimP n=8 Tax=Desulfuromonadales RepID=RIMP_PELPD Length = 161 Score = 164 bits (417), Expect = 6e-40, Method: Composition-based stats. Identities = 54/155 (34%), Positives = 88/155 (56%), Gaps = 7/155 (4%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAV 61 + ++ + ++++ ELV +E+ R GR + LR++ID E G+ +DDCAD+S ++S + Sbjct: 7 DICDRIRTLALPVIDSMNLELVEVEYKRSGREAVLRLFIDKEGGVTLDDCADLSRELSTL 66 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQN-----RRKWQGV 116 LDVED I Y+LEVSSPGLDRPL + Y RF G + + Q+ R+ + G Sbjct: 67 LDVEDLIPCEYSLEVSSPGLDRPLKSEADYERFSGRLIKVRTYEPYQDDAGNRRKTFLGR 126 Query: 117 IKAVDGEMITVTV-EGKDEVFALSNIQKANLVPHF 150 ++ + + +++ EG+ L I KA L F Sbjct: 127 LEGLKDGSVVMSLTEGQTASIPLERIAKAQLEFEF 161 >UniRef50_D0LZ93 Putative uncharacterized protein n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LZ93_HALO1 Length = 209 Score = 164 bits (417), Expect = 7e-40, Method: Composition-based stats. Identities = 59/168 (35%), Positives = 91/168 (54%), Gaps = 20/168 (11%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIRGR-TSTLRIYIDS---------EDG-----IN 47 ++ ++L + + G+ELV + + R ++++ID G ++ Sbjct: 31 SMTEQLMRIAEPVCASAGYELVDLSLTQSRVGWLVQVFIDHMHSDETSTVAGGEEASEVS 90 Query: 48 VDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAV 107 ++DC VS ++SAVLDVEDP+ AYNLEVSSPGLDRPL T H+ RF G EV + L Sbjct: 91 LEDCEHVSRELSAVLDVEDPLPFAYNLEVSSPGLDRPLRTVAHFQRFAGHEVKVRLDGTG 150 Query: 108 Q--NRRKWQGVIKAVDGE---MITVTVEGKDEVFALSNIQKANLVPHF 150 RR ++G ++AV E I V V+G + +I+ A +VP + Sbjct: 151 DATGRRNFKGRLEAVSAEAPASIVVNVDGAPHTLLIDDIESARVVPDW 198 >UniRef50_Q5F799 Ribosome maturation factor rimP n=27 Tax=Neisseria RepID=RIMP_NEIG1 Length = 149 Score = 163 bits (413), Expect = 2e-39, Method: Composition-based stats. Identities = 56/143 (39%), Positives = 81/143 (56%), Gaps = 4/143 (2%) Query: 8 LTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDP 67 + ++ + LG+ELV E TLR++ID E GI V+DCA VS+ +S V VED Sbjct: 9 IQTILEKTLPGLGYELVDFEL--AAQGTLRVFIDKEGGITVEDCATVSNHLSRVFMVEDI 66 Query: 68 ITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITV 127 NLE+SSPGLDRPL A + RF G+ + R+ + ++ + G I+ + + +TV Sbjct: 67 --GYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIGGQKNFIGKIEGCENDTVTV 124 Query: 128 TVEGKDEVFALSNIQKANLVPHF 150 + +GK L NI KA L P F Sbjct: 125 SFDGKTVQIELGNIDKARLRPEF 147 >UniRef50_C6LLB2 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=C6LLB2_9FIRM Length = 201 Score = 163 bits (413), Expect = 2e-39, Method: Composition-based stats. Identities = 56/148 (37%), Positives = 88/148 (59%), Gaps = 2/148 (1%) Query: 5 EQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLD 63 EQK ++ V+A GFELV +E+++ G + LR YID GI VDDC VS + +LD Sbjct: 54 EQKTEAILQPIVDANGFELVDVEYVKEGGSWYLRAYIDKPGGITVDDCELVSRAANDILD 113 Query: 64 VEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGE 123 +D + +Y EVSSPGL RPL + + R +GEEV + A++ ++++ G++KA D E Sbjct: 114 EQDFVEESYIFEVSSPGLGRPLKKEKDFVRSIGEEVEIRTFRAIEKQKEFYGILKAFDKE 173 Query: 124 MITVTVEGK-DEVFALSNIQKANLVPHF 150 +T+ +E + + A ++I L F Sbjct: 174 SVTIVLEDESEMQIARADIALIRLAFDF 201 >UniRef50_Q3A4B0 Ribosome maturation factor rimP n=3 Tax=Desulfuromonadales RepID=RIMP_PELCD Length = 162 Score = 162 bits (412), Expect = 2e-39, Method: Composition-based stats. Identities = 59/159 (37%), Positives = 88/159 (55%), Gaps = 10/159 (6%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSA 60 T+ K+ ++ +E G ELV +E+ R G+ LR+YID G+ +D CA+VS +V Sbjct: 4 QTVLDKIRSLVLPVLEEKGRELVDVEYRREGQGWILRLYIDQPGGVTLDACAEVSREVGV 63 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQ------NRRKWQ 114 +L+VEDPI AYNLEVSSPGLDRPL E Y RF G + R+++ R+ + Sbjct: 64 LLEVEDPIDTAYNLEVSSPGLDRPLTKLEDYERFAGRLAKVKSRVSIDVDGKGRGRKTFV 123 Query: 115 GVIKAVDGEMITVTVEGK---DEVFALSNIQKANLVPHF 150 GV+ + + + ++ K +I+KANL F Sbjct: 124 GVLAGLSEGKVVLELKDKNGFRMEIPFEDIEKANLEIEF 162 >UniRef50_B4U6H1 Ribosome maturation factor rimP n=3 Tax=Aquificaceae RepID=RIMP_HYDS0 Length = 154 Score = 162 bits (412), Expect = 3e-39, Method: Composition-based stats. Identities = 53/148 (35%), Positives = 80/148 (54%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAV 61 + + +++ + LGF L +EF LRI ID E G+ +DDC ++S +VSA+ Sbjct: 5 KKIATTVKDLVKPISDNLGFRLFDVEFKPENGWVLRIIIDKEGGVTIDDCEELSKRVSAL 64 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 LDVED IT +Y LEVSSPGL R L HY F G+ L L+ + N++++ G I +V+ Sbjct: 65 LDVEDVITSSYFLEVSSPGLTRELKEKWHYEFFKGKYARLYLKEKIDNKQEYAGYIDSVE 124 Query: 122 GEMITVTVEGKDEVFALSNIQKANLVPH 149 + + + + K I KA L Sbjct: 125 DDTLVLRLLDKTLKIPFDKIAKARLDVE 152 >UniRef50_C4V3N9 Protein of hypothetical function DUF150 n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V3N9_9FIRM Length = 163 Score = 162 bits (410), Expect = 5e-39, Method: Composition-based stats. Identities = 51/150 (34%), Positives = 81/150 (54%), Gaps = 4/150 (2%) Query: 2 STLEQKLTEMITAPVEALG-FELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSA 60 + +E+++ EM+ + L ELV +E+++ R S LR+YID GI++DDC +S ++ Sbjct: 17 AKIEERVEEMVRGLLTDLPAIELVDVEYVKERDSYLRVYIDKTGGIDIDDCQSLSERLEE 76 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 +LD ED I AY LEVSSPGLDR L + R G V + L + +++W G + Sbjct: 77 MLDREDFIPDAYILEVSSPGLDRVLRKERDFTREHGRTVDVTLYAPFEGKKQWTGTLAGY 136 Query: 121 DGEMITVTVEGKDEVFALSNIQKANLVPHF 150 DGE +T+ + + + L F Sbjct: 137 DGETLTLDDG---VQIPMKQVSQVRLHIDF 163 >UniRef50_A9VT54 Ribosome maturation factor rimP n=6 Tax=Bacillus RepID=RIMP_BACWK Length = 156 Score = 160 bits (407), Expect = 9e-39, Method: Composition-based stats. Identities = 47/154 (30%), Positives = 82/154 (53%), Gaps = 5/154 (3%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSA 60 + + + VE L ELV +E+++ G+ LR++IDSE G+ +++C VS ++S Sbjct: 3 KKVTEIVEAFAQPIVEELNLELVDVEYVQEGQDWFLRVFIDSEKGVEIEECGAVSERLSE 62 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 LD EDPI Y L+VSSPG +RPL + + + VG++V + + + ++G + + Sbjct: 63 ALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYKPIDGEKMFEGKLLSY 122 Query: 121 DGEMITVTV----EGKDEVFALSNIQKANLVPHF 150 DG IT+ + K+ + + A L F Sbjct: 123 DGNTITLLLTIKTRKKEIQIPMDKVANARLAVTF 156 >UniRef50_C7LRI2 Putative uncharacterized protein n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LRI2_DESBD Length = 162 Score = 160 bits (407), Expect = 9e-39, Method: Composition-based stats. Identities = 55/151 (36%), Positives = 91/151 (60%), Gaps = 3/151 (1%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFI---RGRTSTLRIYIDSEDGINVDDCADVSHQV 58 + + +L EM+T EA E+ GIE + GR +R+Y+DS+ G+ +D+C++VS + Sbjct: 4 NEIHARLMEMVTPLCEARDLEVWGIELLFAAGGRHKIVRVYLDSQQGVGIDECSEVSRHL 63 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 S LDVED I A+NLEVSSPGL+RP F+ E +VG+ V + L ++ R+ ++G + Sbjct: 64 SLALDVEDIIPGAFNLEVSSPGLERPFFSTEQMLPYVGQTVRIRLDNPLEGRKNFKGRLL 123 Query: 119 AVDGEMITVTVEGKDEVFALSNIQKANLVPH 149 +++ M T++ + ++ KANLV Sbjct: 124 SIESPMFTLSDDSTTFELNWDDVGKANLVYE 154 >UniRef50_Q895K1 Ribosome maturation factor rimP n=1 Tax=Clostridium tetani RepID=RIMP_CLOTE Length = 153 Score = 160 bits (407), Expect = 1e-38, Method: Composition-based stats. Identities = 56/149 (37%), Positives = 83/149 (55%), Gaps = 1/149 (0%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRT-STLRIYIDSEDGINVDDCADVSHQVSA 60 T L E+ V L +EL +EF+ + LRIYIDSE GI ++DC VS VSA Sbjct: 4 KTFIDNLKELTEPIVNDLDYELYYLEFVNENKENYLRIYIDSESGIGLEDCEKVSRAVSA 63 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 +LD +DPI +Y LEVSSPGL+R L+ +H +G+ + L RK++G +K+ Sbjct: 64 MLDEKDPIDTSYYLEVSSPGLERQLYDDKHIEDNIGKTACVRLESLFNGGRKFEGKLKSF 123 Query: 121 DGEMITVTVEGKDEVFALSNIQKANLVPH 149 D E +T+ + +D I++ NL+ Sbjct: 124 DNENLTLEINAEDFKIPRKKIKRINLIYE 152 >UniRef50_C3P5L9 Ribosome maturation factor rimP n=253 Tax=Firmicutes RepID=RIMP_BACAA Length = 156 Score = 160 bits (406), Expect = 1e-38, Method: Composition-based stats. Identities = 47/154 (30%), Positives = 83/154 (53%), Gaps = 5/154 (3%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSA 60 + + + VE L ELV +E+++ G+ LR++IDSE G+++++C VS ++S Sbjct: 3 KKVTEVVEAFAQPIVEELNLELVDVEYVKEGQDWFLRVFIDSEKGVDIEECGAVSERLSE 62 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 LD EDPI Y L+VSSPG +RPL + + + VG++V + + + ++G + + Sbjct: 63 ALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIKTYEPIDGEKMFEGKMLSY 122 Query: 121 DGEMITVTV----EGKDEVFALSNIQKANLVPHF 150 DG IT+ + K+ + + A L F Sbjct: 123 DGTTITLLLTIKTRKKEIQIPMDKVANARLAVTF 156 >UniRef50_D1BM56 Putative uncharacterized protein n=4 Tax=Veillonellaceae RepID=D1BM56_VEIPT Length = 152 Score = 160 bits (405), Expect = 2e-38, Method: Composition-based stats. Identities = 51/148 (34%), Positives = 83/148 (56%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVL 62 +E+ ++ ++ + ELV ++++R R LR+Y+D G+++DDC VS ++SAVL Sbjct: 5 AVEEFVSSVVEGIIAGTDMELVDVDYVRERDWYLRVYLDKPGGVDLDDCQLVSEKLSAVL 64 Query: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 D +DPIT Y LEVSSPGLDR L + R+ G +V + L A+ +++ G ++ Sbjct: 65 DEKDPITENYLLEVSSPGLDRVLKKDKDLVRYNGRDVDIQLFKAINGSKQFTGALQGFTD 124 Query: 123 EMITVTVEGKDEVFALSNIQKANLVPHF 150 I T+ G+ F S I + L F Sbjct: 125 TTIEFTINGESMTFERSTIAQIRLHLDF 152 >UniRef50_A1WXV3 Ribosome maturation factor rimP n=3 Tax=Gammaproteobacteria RepID=RIMP_HALHL Length = 151 Score = 159 bits (403), Expect = 3e-38, Method: Composition-based stats. Identities = 71/151 (47%), Positives = 94/151 (62%), Gaps = 3/151 (1%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGR-TSTLRIYIDSEDGINVDDCADVSHQVS 59 MS + Q L ++ V LG+ELVG+E + TLR+YID+ GI ++DC VSHQVS Sbjct: 1 MSQI-QTLHSLLEPTVTGLGYELVGVELTGAKGNRTLRVYIDTPAGIRLEDCEAVSHQVS 59 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 +LDVEDPI AYNLEVSSPGLDRP+F + Y RF GE + L L + RR+ +GV+ Sbjct: 60 GLLDVEDPIEGAYNLEVSSPGLDRPIFKSADYDRFSGERIKLRLLELYEGRRRVKGVLLG 119 Query: 120 VDGEMITV-TVEGKDEVFALSNIQKANLVPH 149 +DGE + V V+G + L I +A L Sbjct: 120 LDGEFVRVRDVDGVELRIPLELIDRARLDLE 150 >UniRef50_D2RKW8 Putative uncharacterized protein n=2 Tax=Acidaminococcus RepID=D2RKW8_ACIFE Length = 153 Score = 159 bits (402), Expect = 3e-38, Method: Composition-based stats. Identities = 48/150 (32%), Positives = 78/150 (52%), Gaps = 1/150 (0%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAV 61 + +++T++ VE G ELV +E++R R LR++ID GI++DDC+ VS+ ++ Sbjct: 4 KKITERVTDLAAPIVEEAGLELVDVEYVRERDWFLRVFIDKAGGIDIDDCSAVSNALAKK 63 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 LD ED I Y LEVSSPG+DRPL + G++V L + +++ V+K+ D Sbjct: 64 LDEEDFIKEKYYLEVSSPGIDRPLKKDKDLEAHYGQKVDLAFFAPYEGKKQLTAVLKSHD 123 Query: 122 GEMITVTV-EGKDEVFALSNIQKANLVPHF 150 E + + + K I F Sbjct: 124 AEKLVLEDAKKKKLAIERKLIASVRPHIDF 153 >UniRef50_Q67P90 Ribosome maturation factor rimP n=2 Tax=Clostridiales RepID=RIMP_SYMTH Length = 160 Score = 159 bits (402), Expect = 4e-38, Method: Composition-based stats. Identities = 54/155 (34%), Positives = 80/155 (51%), Gaps = 6/155 (3%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSA 60 LE+ + E+ ALG ELVG+E ++ G LR+YID E G+ DDC +S V A Sbjct: 6 KRLEELVEELAAPHAAALGLELVGVELVKEGAYRYLRVYIDKEGGVGFDDCEALSRVVDA 65 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 LD P EVSSPGLDRPL +AR+VG +V + V ++ + G ++ + Sbjct: 66 QLDEILPNPPYDFFEVSSPGLDRPLKREADFARYVGHKVVVTTYAPVDGQKSFVGELQGL 125 Query: 121 DGEMITVTV---EGKDEVFALS--NIQKANLVPHF 150 +T+T+ +G+ + AL + A L F Sbjct: 126 VDGRVTLTLTEGKGRGQTIALDRKQVASARLYVEF 160 >UniRef50_A9HF10 Ribosome maturation factor rimP n=10 Tax=Acetobacteraceae RepID=RIMP_GLUDA Length = 207 Score = 158 bits (401), Expect = 4e-38, Method: Composition-based stats. Identities = 49/150 (32%), Positives = 87/150 (58%), Gaps = 3/150 (2%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG--INVDDCADVSHQV 58 ++ L+ K+ ++ + +GFELV + + + T++I D DG I ++DC +SH V Sbjct: 8 LTGLDAKVAAIVAPVLADMGFELVRVAILGRESPTVQIMADRADGTLIAIEDCEQISHAV 67 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 AVLDVEDP+ A+ LEVSS G+DRPL A+ + RF G + + + R+++ G++ Sbjct: 68 GAVLDVEDPLPGAWTLEVSSAGIDRPLTRAKDWTRFAGHLAKAEVNIPIDGRKRFSGILL 127 Query: 119 AVDGEMITVTV-EGKDEVFALSNIQKANLV 147 + + + +G + LS++++A LV Sbjct: 128 GAEDGFGRLRLEDGTEVALPLSDMRRARLV 157 >UniRef50_C0GUB7 Putative uncharacterized protein n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GUB7_9DELT Length = 154 Score = 158 bits (401), Expect = 5e-38, Method: Composition-based stats. Identities = 48/150 (32%), Positives = 85/150 (56%), Gaps = 4/150 (2%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRG---RTSTLRIYIDSEDGINVDDCADVSHQV 58 +++++ E++ +G E G++F+ G + LR+++DS +G+++D CAD+S Q+ Sbjct: 4 QEIKKQVEELVQTNCRLMGLEPWGMDFVPGTGKQRGVLRVFVDSPEGVSIDQCADLSRQL 63 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 S LDVED + +YNLEVSSPGL+R F E + + G +V + L+ R+ + G ++ Sbjct: 64 SVALDVEDLVPGSYNLEVSSPGLNRRFFRPEQMSGYTGHKVKITLKEPRDGRKNFTGTLQ 123 Query: 119 AVDGEMITVTV-EGKDEVFALSNIQKANLV 147 + E I++ F I +A LV Sbjct: 124 EAENETISIQTSPDCTWSFQWDEIDRARLV 153 >UniRef50_C7MNM1 Uncharacterized conserved protein n=4 Tax=Coriobacteriaceae RepID=C7MNM1_CRYCD Length = 177 Score = 158 bits (400), Expect = 6e-38, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 84/155 (54%), Gaps = 5/155 (3%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGRT-STLRIYIDSEDGINVDDCADVSHQVS 59 ++ E +L E + G E+V IE + R T+R++ID+ DG++ D A ++ Sbjct: 21 LTGKETRLLEALEPTAREKGIEIVSIEIVGSRKAPTIRVFIDTPDGVSFDALASAQSWIN 80 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 ++D DP AY LEVSSPG+DRPL T EH+ RF G+E +VLR + R K+ G++K Sbjct: 81 EIMDAIDPFPGAYMLEVSSPGIDRPLRTPEHFQRFSGQEAQIVLRAPIDGRSKFTGMLKG 140 Query: 120 VDGEMITVTVEG--KDEVFALSNIQKANLV--PHF 150 + + V+G + I++A+L F Sbjct: 141 FADGAVLLLVDGADEVTSINYDAIKRAHLKGSVDF 175 >UniRef50_A4BTQ0 Putative uncharacterized protein n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BTQ0_9GAMM Length = 150 Score = 158 bits (400), Expect = 6e-38, Method: Composition-based stats. Identities = 67/150 (44%), Positives = 96/150 (64%), Gaps = 2/150 (1%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGRTS-TLRIYIDSEDGINVDDCADVSHQVS 59 M+ L LT+++ V A+G+ELVGIE+ ++ LRIYID DGI+V+DCA VS+Q+S Sbjct: 1 MTAL-DTLTKVVEPVVAAMGYELVGIEYRPSKSQALLRIYIDKADGISVEDCALVSNQIS 59 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 VLDVEDP++ Y LEVSSPGL RP+F A Y RF GE V + +R + RR+ G+++ Sbjct: 60 GVLDVEDPLSGRYTLEVSSPGLRRPIFKASDYERFAGELVHIRIRGTLDGRRRIHGLLRG 119 Query: 120 VDGEMITVTVEGKDEVFALSNIQKANLVPH 149 + + + V G + L+ + KANL Sbjct: 120 LRADCVIVVENGIEISVPLNRVDKANLELE 149 >UniRef50_Q2LWU4 Ribosome maturation factor rimP n=1 Tax=Syntrophus aciditrophicus SB RepID=RIMP_SYNAS Length = 160 Score = 157 bits (398), Expect = 1e-37, Method: Composition-based stats. Identities = 53/154 (34%), Positives = 82/154 (53%), Gaps = 5/154 (3%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGR-TSTLRIYIDSEDGINVDDCADVSHQVSA 60 L + + ++ + + G ELV +E +R + +RIY+D E G+ +DDC+++S+Q+ Sbjct: 7 KKLREDIWQLAEPVIASEGLELVEVECLRMKTRWLVRIYMDREGGVTLDDCSEISNQLGD 66 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 VLDV D Y LEVSSPGLDRPL + + R+ G EV++ L V R ++G + Sbjct: 67 VLDVHDLPPDPYTLEVSSPGLDRPLVRDKDFVRYQGCEVSIRLEQKVDGIRNFRGRLLEY 126 Query: 121 DGEM----ITVTVEGKDEVFALSNIQKANLVPHF 150 E + + + K I KANLV F Sbjct: 127 VEEDGRKILVIEMASKLYRIPRDLIVKANLVYRF 160 >UniRef50_A9KNW8 Ribosome maturation factor rimP n=13 Tax=Clostridiales RepID=RIMP_CLOPH Length = 155 Score = 157 bits (398), Expect = 1e-37, Method: Composition-based stats. Identities = 57/155 (36%), Positives = 86/155 (55%), Gaps = 5/155 (3%) Query: 1 MSTLEQ---KLTEMITAPVEALGFELVGIEFIRG-RTSTLRIYIDSEDGINVDDCADVSH 56 M+ E+ K +++T +E FELV +E+++ LR YID E GI VDDC VS Sbjct: 1 MTKREEYELKAEQLLTPIMEENNFELVDVEYVKEVGNWYLRAYIDKEGGITVDDCEVVSR 60 Query: 57 QVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGV 116 + S +LD +D I AY LEVSSPGL R L + + R +GEEV + L A+ ++ ++G+ Sbjct: 61 RFSDLLDEKDFIPDAYILEVSSPGLGRQLKKDKDFKRSLGEEVEIKLYKAINKQKDFEGI 120 Query: 117 IKAVDGEMITVT-VEGKDEVFALSNIQKANLVPHF 150 + D E + + +G FA ++I L F Sbjct: 121 LTDFDQEKLIIEQADGTTMEFARADIAMVRLALDF 155 >UniRef50_A8MHI0 Ribosome maturation factor rimP n=11 Tax=Clostridia RepID=RIMP_ALKOO Length = 154 Score = 157 bits (397), Expect = 1e-37, Method: Composition-based stats. Identities = 53/151 (35%), Positives = 76/151 (50%), Gaps = 2/151 (1%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSA 60 + +E+ ++ ++ FELV +E+ + G LRIYID GI +DDC VS Q+ Sbjct: 4 NRVEKITERLVMPIIQNENFELVDLEYKKEGSNWYLRIYIDKPGGITLDDCQKVSEQLGE 63 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 LD EDPI+ Y LEVSSPGLDRPL + RF GE V + L A+ + +G + + Sbjct: 64 ELDREDPISENYFLEVSSPGLDRPLKKDSDFIRFAGEIVEVKLYEALNGNKVIEGELVGL 123 Query: 121 DGEMITVTVEGKD-EVFALSNIQKANLVPHF 150 + MI + V + L F Sbjct: 124 EENMIKINVANVGLLELPKEKVALTRLAVKF 154 >UniRef50_Q01W33 Ribosome maturation factor rimP n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=RIMP_SOLUE Length = 153 Score = 157 bits (397), Expect = 1e-37, Method: Composition-based stats. Identities = 50/153 (32%), Positives = 79/153 (51%), Gaps = 3/153 (1%) Query: 1 MST-LEQKLTEMITAPVEALGFELVGIEFIRGRT-STLRIYIDSEDGINVDDCADVSHQV 58 M + K+ E+ ++ G ELV +E G + +RI ID +G+ DC VS +V Sbjct: 1 MQEAVTSKVEEVAQRVAQSEGLELVEVEVKGGGSARLVRISIDKPEGVTHADCQTVSDKV 60 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 +L+ ED I Y LEVSSPG++R L + Y RF G++ + +R V RR W+G + Sbjct: 61 GEILEAEDAIPGHYTLEVSSPGVERKLLKPQDYQRFHGQKAKITVREEVDGRRTWEGTLA 120 Query: 119 AVDGEMITVTV-EGKDEVFALSNIQKANLVPHF 150 +I++ V G+ ++KANL + Sbjct: 121 GFADGVISLEVAPGEIRRLPFDQVKKANLKFEW 153 >UniRef50_C4Z5N3 Ribosome maturation factor rimP n=10 Tax=Bacteria RepID=RIMP_EUBE2 Length = 156 Score = 157 bits (397), Expect = 1e-37, Method: Composition-based stats. Identities = 51/142 (35%), Positives = 81/142 (57%), Gaps = 1/142 (0%) Query: 5 EQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLD 63 E K TE+I VEA G EL +++++ G LR+YID E G+ +DDC +VS + +LD Sbjct: 8 EAKTTELIQPVVEANGVELFDVDYVKEGSDWYLRVYIDKEGGVTIDDCQNVSRAFNEILD 67 Query: 64 VEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGE 123 E+ I Y EVSSPGL RPL + Y + +G + + L V +++ GV+K D + Sbjct: 68 RENYIDDQYIFEVSSPGLTRPLKKEKDYEKSIGRMIEIKLFSPVDKSKEYSGVLKEYDKD 127 Query: 124 MITVTVEGKDEVFALSNIQKAN 145 +T++++ + F SN+ Sbjct: 128 TVTISIDDVTKTFDRSNLAMIR 149 >UniRef50_B5EMC8 Ribosome maturation factor rimP n=2 Tax=Acidithiobacillus ferrooxidans RepID=RIMP_ACIF5 Length = 153 Score = 157 bits (397), Expect = 1e-37, Method: Composition-based stats. Identities = 58/153 (37%), Positives = 83/153 (54%), Gaps = 3/153 (1%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGRTST-LRIYIDSED--GINVDDCADVSHQ 57 M +E +L E I G LV +R + L+++I+ ++ + ++DCA VS Q Sbjct: 1 MVNVEDRLYEGIAQQAGIAGCTLVDARMVRTGRAVALQVFIEKDETTAVTIEDCAAVSRQ 60 Query: 58 VSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI 117 +S LDVE+PI AY LEVSSPGLDRPL + RF G + + L Q RR+ QG + Sbjct: 61 LSLWLDVENPIHGAYRLEVSSPGLDRPLKNLHDFERFKGSQAEIHLHGLTQGRRRLQGEL 120 Query: 118 KAVDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 V+ + I + FAL +I KA LVP + Sbjct: 121 LGVEDQKIVLKNAEGRWTFALDDIHKARLVPQW 153 >UniRef50_C9KKC0 Putative uncharacterized protein n=2 Tax=Veillonellaceae RepID=C9KKC0_9FIRM Length = 211 Score = 156 bits (396), Expect = 2e-37, Method: Composition-based stats. Identities = 42/150 (28%), Positives = 75/150 (50%), Gaps = 4/150 (2%) Query: 2 STLEQKLTEMITAPVEALGF-ELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSA 60 +E + ++ ++ ELV E+++ LR+YID E GI+++DC +S ++ Sbjct: 65 QQVEDAVEAIVQELLKDQDVIELVDAEYVKEHDWYLRVYIDKEGGIDIEDCQALSEKLEE 124 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 LD D + +Y LEVSSPG+DR L + R G++V + L + ++ G + Sbjct: 125 ALDKGDVVPDSYILEVSSPGIDRVLRKPRDFTREQGKKVDVTLYAPREGKKLVVGELTGF 184 Query: 121 DGEMITVTVEGKDEVFALSNIQKANLVPHF 150 DG+ I + + L++I + L F Sbjct: 185 DGDAIELD---GETKIPLADIAQVRLHIDF 211 >UniRef50_B0PH19 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PH19_9FIRM Length = 159 Score = 156 bits (396), Expect = 2e-37, Method: Composition-based stats. Identities = 41/144 (28%), Positives = 72/144 (50%), Gaps = 2/144 (1%) Query: 9 TEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDP 67 + + +G L + F + G LR YID E G+ +D+C S +VS +LD DP Sbjct: 16 EALAAPVAQRMGLYLWDVAFEKEGAGWYLRYYIDREGGVTIDECEAFSREVSDLLDEADP 75 Query: 68 ITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITV 127 I +Y LEV SPG++R L H+ +++G +V + L V+ R + G + + + ++ V Sbjct: 76 IDQSYTLEVGSPGVERKLTKDWHFQKYIGAQVHVRLIRPVEGERDFVGALSSYENGVVAV 135 Query: 128 TVEGK-DEVFALSNIQKANLVPHF 150 ++ + + F+ L F Sbjct: 136 LLDDELEMTFSPGETAFVRLYEEF 159 >UniRef50_A1AV97 Ribosome maturation factor rimP n=3 Tax=Bacteria RepID=RIMP_RUTMC Length = 154 Score = 156 bits (395), Expect = 2e-37, Method: Composition-based stats. Identities = 64/154 (41%), Positives = 98/154 (63%), Gaps = 4/154 (2%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFI-RGRTSTLRIYIDSED-GINVDDCADVSHQV 58 M+ + K+T +I ++ + +ELVGIE++ G+ S LR++ID++ G+ V+DC VS Q+ Sbjct: 1 MARVTDKITHLIELVIKDMCYELVGIEYVASGKHSILRVFIDTDKKGVGVNDCEKVSRQL 60 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 S++ DVE+PI+ Y LEVSSPG++RPLF EHY RF+G V L + + RR + GVI Sbjct: 61 SSIFDVEEPISGQYTLEVSSPGIERPLFHKEHYQRFLGANVKLRMVRPIDGRRNFFGVIG 120 Query: 119 AVDGEMITVTVEGK--DEVFALSNIQKANLVPHF 150 V+ T + G+ + + I+KANLV F Sbjct: 121 CVNEADNTFELVGELDLVILDIDLIEKANLVVDF 154 >UniRef50_A9G896 Ribosome maturation factor rimP n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=RIMP_SORC5 Length = 208 Score = 156 bits (395), Expect = 2e-37, Method: Composition-based stats. Identities = 56/151 (37%), Positives = 82/151 (54%), Gaps = 8/151 (5%) Query: 7 KLTEMITAPVEALGFELVGIEFIRGR-TSTLRIYIDSE------DGINVDDCADVSHQVS 59 ++ + + + + G LV +E+I R TLR+ I+ E G+ ++DCADVS VS Sbjct: 13 RVRDAVAPVLASHGVTLVDLEWITERAGWTLRLTIERENADDAGGGVTLEDCADVSRDVS 72 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAV-QNRRKWQGVIK 118 +VLDVED I YNLEVSSPGLDR L TA +ARF+G + L +R +G + Sbjct: 73 SVLDVEDLIPNHYNLEVSSPGLDRRLRTAAEFARFLGRTAKVKLARPAPDGQRLLRGELL 132 Query: 119 AVDGEMITVTVEGKDEVFALSNIQKANLVPH 149 + V V+GK +++ +A LV Sbjct: 133 EAPEGQVAVLVDGKRIAVPFADVAEARLVFE 163 >UniRef50_Q1GXD8 Ribosome maturation factor rimP n=16 Tax=Betaproteobacteria RepID=RIMP_METFK Length = 144 Score = 155 bits (394), Expect = 3e-37, Method: Composition-based stats. Identities = 56/145 (38%), Positives = 84/145 (57%), Gaps = 2/145 (1%) Query: 6 QKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVE 65 Q L ++ + LG+ELV +E R +R++ID +GIN+DDC VS+ +S +L VE Sbjct: 2 QDLNALLERSLGQLGYELVDMEL-ANRGKLIRLFIDKPEGINIDDCVLVSNHLSNLLAVE 60 Query: 66 DPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMI 125 I LE+SSPGLDR L + RF GE + LRM ++ R+ + G+++ VD E + Sbjct: 61 HDIDYD-RLEISSPGLDRVLKKTSDFVRFAGERAQVKLRMPIEGRKNFLGILRGVDQEYL 119 Query: 126 TVTVEGKDEVFALSNIQKANLVPHF 150 + +G ++ SNI KA L P F Sbjct: 120 VLECDGVEQRVPFSNIDKARLSPEF 144 >UniRef50_A8GW29 Ribosome maturation factor rimP n=13 Tax=Rickettsia RepID=RIMP_RICB8 Length = 168 Score = 155 bits (393), Expect = 4e-37, Method: Composition-based stats. Identities = 54/149 (36%), Positives = 87/149 (58%), Gaps = 2/149 (1%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDS--EDGINVDDCADVSHQV 58 M T+EQ++T++I + +GFELV + + + I ID + + ++DC S+ + Sbjct: 1 MQTIEQQITDLIQETLSDMGFELVLVRVKGLSSKVVEILIDRLDDQKVTIEDCTKASNTI 60 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 SA+LDVED I AY LEVSS G++RPL E+Y RF+G EV + L+ + R ++QG I Sbjct: 61 SAILDVEDLIEEAYYLEVSSSGVERPLVKFENYKRFIGREVKIKLKELLNGRSRYQGTII 120 Query: 119 AVDGEMITVTVEGKDEVFALSNIQKANLV 147 + + + E ++ + I+ ANLV Sbjct: 121 EAKDDKVYLKWEDQEVIINYDLIKSANLV 149 >UniRef50_C0QTL6 Ribosome maturation factor rimP n=4 Tax=Hydrogenothermaceae RepID=RIMP_PERMH Length = 151 Score = 155 bits (393), Expect = 4e-37, Method: Composition-based stats. Identities = 56/148 (37%), Positives = 86/148 (58%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAV 61 + +K+ EM+ +E G +LV IE++ LRIYI + +G ++DC +S ++ A+ Sbjct: 3 QEIIEKVKEMLQPLLEERGLKLVDIEYVTEGKPVLRIYIYNPEGTTIEDCEWISRRIGAL 62 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 LD+ED I V+Y LEVSSPGL+R L E Y F G ++ +VL+ V + +GV+K + Sbjct: 63 LDIEDLIPVSYTLEVSSPGLERKLKNVEEYDIFKGRDIKIVLKEPVDKKNVIKGVLKGRE 122 Query: 122 GEMITVTVEGKDEVFALSNIQKANLVPH 149 I V EG++ L NI +ANL Sbjct: 123 DNNIIVEEEGEEVRIPLENIARANLEFK 150 >UniRef50_B9E1J8 Ribosome maturation factor rimP n=15 Tax=Clostridium RepID=RIMP_CLOK1 Length = 154 Score = 154 bits (391), Expect = 7e-37, Method: Composition-based stats. Identities = 59/145 (40%), Positives = 93/145 (64%), Gaps = 2/145 (1%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDG-INVDDCADVSHQVSAV 61 L +++ ++I V+ L FEL +EF R G + LRI+ID E+G I+++DC VS VS + Sbjct: 6 LVERVLKLIKPIVDNLNFELYHLEFKREGNNNYLRIFIDKEEGNISLEDCEAVSRAVSDI 65 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 LD EDPI Y LEVSSPG++R L+T EH R++G V + ++ ++ ++K+QG + + D Sbjct: 66 LDREDPIRDPYYLEVSSPGIERTLYTHEHLKRYIGFNVIVNIQGLLKGKKKYQGKLLSFD 125 Query: 122 GEMITVTVEGKDEVFALSNIQKANL 146 ++ V+ EG++ V S I NL Sbjct: 126 ESVLRVSCEGEEIVIPKSKISTVNL 150 >UniRef50_C5VSJ6 Putative uncharacterized protein n=1 Tax=Clostridium botulinum D str. 1873 RepID=C5VSJ6_CLOBO Length = 154 Score = 154 bits (389), Expect = 1e-36, Method: Composition-based stats. Identities = 55/147 (37%), Positives = 84/147 (57%), Gaps = 1/147 (0%) Query: 5 EQKLTEMITAPVEALGFELVGIEFIRGRT-STLRIYIDSEDGINVDDCADVSHQVSAVLD 63 K+ E++ VE L +EL IE++R + + LRIYIDS GIN++DC VS +VS +LD Sbjct: 8 IDKINELVRPIVEGLNYELYYIEYVREQNENYLRIYIDSSKGINLEDCEKVSRKVSDMLD 67 Query: 64 VEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGE 123 +DPI Y LEVSSPG++R L T EH +++ ++ + L + R+ QG + + E Sbjct: 68 EKDPIEDGYYLEVSSPGIERVLHTDEHLHKYINNQIVIKLAKLFEGSREHQGKLLNFNDE 127 Query: 124 MITVTVEGKDEVFALSNIQKANLVPHF 150 IT+ + + I+K L F Sbjct: 128 SITIQKDNESISIPRDRIKKIILKGEF 154 >UniRef50_D2Q1L3 Putative uncharacterized protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2Q1L3_9ACTO Length = 178 Score = 153 bits (388), Expect = 1e-36, Method: Composition-based stats. Identities = 51/145 (35%), Positives = 72/145 (49%), Gaps = 6/145 (4%) Query: 8 LTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVED 66 L + VE G +L E GR LR+ +D + GI++DD ADV+ +S LD +D Sbjct: 13 LENFLRPLVEQFGCDLEAAEVTPAGRRRLLRVLVDRDGGISLDDVADVTRAISKALDADD 72 Query: 67 PI-TVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMI 125 + AY LEVSSPG+DRPL H+ R + V + L K G IK V E Sbjct: 73 VMGDGAYTLEVSSPGVDRPLTLPRHWRRNISRLVAVTLHS----GDKLTGRIKTVSDETA 128 Query: 126 TVTVEGKDEVFALSNIQKANLVPHF 150 + V+G A +++ KA + F Sbjct: 129 DLDVDGTLRTVAYADVDKAKVQIEF 153 >UniRef50_C6C0D6 Ribosome maturation factor rimP n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=RIMP_DESAD Length = 155 Score = 153 bits (388), Expect = 1e-36, Method: Composition-based stats. Identities = 51/150 (34%), Positives = 93/150 (62%), Gaps = 2/150 (1%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVL 62 +L +K+++ + +E++G L G+E + IYIDSE+G+++D CA+VS V +L Sbjct: 5 SLAKKVSQFVEPTIESMGLTLWGVEVTSANRPAVIIYIDSENGVSIDQCAEVSRDVGLML 64 Query: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 +VE+ I AY LEVSSPGL+R F E + +VG+++ + L +++ R+K++G+++ D Sbjct: 65 EVEEVIDSAYVLEVSSPGLERKFFKPEQMSAYVGKKIDIALVFSLEGRKKFKGLLQETDE 124 Query: 123 EMITVTVEGKD--EVFALSNIQKANLVPHF 150 E + + +E ++ I+KA L+ F Sbjct: 125 EGLLLKLEDQEDPIKIEWDRIKKAKLIHEF 154 >UniRef50_A0LE22 Ribosome maturation factor rimP n=1 Tax=Magnetococcus sp. MC-1 RepID=RIMP_MAGSM Length = 185 Score = 153 bits (388), Expect = 2e-36, Method: Composition-based stats. Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 12/162 (7%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGRT-STLRIYIDS-------EDGINVDDCA 52 MS + QK+ + + E+V + + R +R+ D E I++D+C Sbjct: 24 MSDIAQKVEALAIQAAKTEDCEVVEVIYRREGGVYVVRVAADKLPDDQGQERHISLDECG 83 Query: 53 DVSHQVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQN--- 109 +S Q+S++LDV D I AY+LEVSSPG++RPL + RF G+ V + + Sbjct: 84 SISRQISSLLDVHDVIPNAYHLEVSSPGIERPLIKDGDFTRFAGKLVEIRTYQPMDTESG 143 Query: 110 -RRKWQGVIKAVDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 R+K++G + + M+ V + + KA+L F Sbjct: 144 PRKKFRGTLLGLQEAMVVVAEANGEVRIPWEQVAKAHLTFDF 185 >UniRef50_B6IVF3 Ribosome maturation factor rimP n=1 Tax=Rhodospirillum centenum SW RepID=RIMP_RHOCS Length = 252 Score = 153 bits (388), Expect = 2e-36, Method: Composition-based stats. Identities = 50/127 (39%), Positives = 81/127 (63%), Gaps = 2/127 (1%) Query: 5 EQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG--INVDDCADVSHQVSAVL 62 +++ +I VEA+G+ELV ++ G+ TL+I + DG + V+DCAD+S VSA+L Sbjct: 4 VERIGRIIEPSVEAMGYELVRVQLSGGQRPTLQIMAERSDGAAMTVEDCADISRAVSALL 63 Query: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 DVEDP+ AY LEVSSPG+DRPL + + RF G E L + V R++++G + ++ Sbjct: 64 DVEDPLPGAYTLEVSSPGIDRPLTRLKDFERFAGFEARLETKAPVDGRKRFRGFLAGIED 123 Query: 123 EMITVTV 129 + + + + Sbjct: 124 DAVRLAL 130 >UniRef50_Q72EQ8 Ribosome maturation factor rimP n=3 Tax=Desulfovibrio vulgaris RepID=RIMP_DESVH Length = 172 Score = 153 bits (387), Expect = 2e-36, Method: Composition-based stats. Identities = 57/160 (35%), Positives = 89/160 (55%), Gaps = 11/160 (6%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAV 61 L+ + +M + +LG EL GIE G + +R+++D +G+ +D CA+VS V Sbjct: 4 QALDATIADMAGPFLASLGLELWGIELSYGGRTVVRLFVDGPEGVTIDQCAEVSRHVGLA 63 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAV---QNRRKWQGVIK 118 L+VED I+ AY LEVSSPGL+RP F AE + +VG ++ L L RRK++G + Sbjct: 64 LEVEDVISSAYVLEVSSPGLERPFFRAEQMSPYVGRQIELTLIDPTPEWPGRRKFRGELL 123 Query: 119 AVDGEMITVTVEGKD--------EVFALSNIQKANLVPHF 150 AV+G+ + + EG + ++KANL+ F Sbjct: 124 AVEGDTVVLRPEGAPAPEAEEAVLRTSWQGVRKANLIHVF 163 >UniRef50_Q2VZU7 Ribosome maturation factor rimP n=4 Tax=Alphaproteobacteria RepID=RIMP_MAGSA Length = 166 Score = 153 bits (387), Expect = 2e-36, Method: Composition-based stats. Identities = 55/150 (36%), Positives = 90/150 (60%), Gaps = 5/150 (3%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGI--NVDDCADVSHQVSA 60 L+ +L +I ++A+G+ELV ++ + TL+I D +DG+ VDDCAD+S VSA Sbjct: 2 DLQSRLEALIAPSLDAMGYELVRVQLQGKQRLTLQIMADRKDGVMMAVDDCADISRSVSA 61 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 +LDVEDPI+ AY LEVSSPG+DRPL A+ + + G E + + R++++G + + Sbjct: 62 LLDVEDPISAAYTLEVSSPGIDRPLTRAKDFVAWAGFEAKMESCQPIDGRKRFRGKLLGL 121 Query: 121 DGEMITVTV---EGKDEVFALSNIQKANLV 147 D + V + + L++++ A LV Sbjct: 122 DEAGVNVRLVIEAAGEIAIPLADVRGAKLV 151 >UniRef50_Q7NFN6 Ribosome maturation factor rimP n=1 Tax=Gloeobacter violaceus RepID=RIMP_GLOVI Length = 156 Score = 153 bits (387), Expect = 2e-36, Method: Composition-based stats. Identities = 46/148 (31%), Positives = 78/148 (52%), Gaps = 3/148 (2%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIRG-RTSTLRIYIDSE-DGINVDDCADVSHQVSA 60 + +++T + E LG +LV + + + +TLR+ I +G +DDC +S + A Sbjct: 5 DIVEQVTALAEPVAEQLGLQLVAVAYQTHTKPATLRVDIRHPTEGTGLDDCEKMSRALEA 64 Query: 61 VLD-VEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 +LD +D I AYNLEVSSPG++R L T + F G V + V +++W+G + Sbjct: 65 LLDTRDDLIIGAYNLEVSSPGVERVLTTDREFMAFRGFPVMVKTFGPVDGKKQWEGRLLE 124 Query: 120 VDGEMITVTVEGKDEVFALSNIQKANLV 147 DGE + +T+ G+ + + LV Sbjct: 125 RDGENVYLTIAGRRVALPRPQVARVQLV 152 >UniRef50_A0LHL6 Ribosome maturation factor rimP n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=RIMP_SYNFM Length = 168 Score = 152 bits (386), Expect = 2e-36, Method: Composition-based stats. Identities = 50/145 (34%), Positives = 84/145 (57%), Gaps = 1/145 (0%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIRG-RTSTLRIYIDSEDGINVDDCADVSHQVSAV 61 + +++ ++ + A G E++ IE+ R LR+++D E G++VDDCA +S V + Sbjct: 16 RIVRQVWDLTEPVIRAEGMEIIEIEYRRESPGWVLRVFVDQEGGVSVDDCARISRVVGDL 75 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 LDV D I Y+LEVSSPGL+RPL E +A+ VG+ + + + RR ++G++K V Sbjct: 76 LDVADIIHYPYHLEVSSPGLNRPLRKREQFAKVVGKVIEVKTLVPFGTRRNFKGILKEVG 135 Query: 122 GEMITVTVEGKDEVFALSNIQKANL 146 E I + + + SN+ +A L Sbjct: 136 VERIRMDCDNQLFEIPFSNMDRARL 160 >UniRef50_D1U698 Putative uncharacterized protein n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U698_9DELT Length = 156 Score = 152 bits (386), Expect = 3e-36, Method: Composition-based stats. Identities = 66/153 (43%), Positives = 88/153 (57%), Gaps = 5/153 (3%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEF-IRGRTSTLRIYIDSEDGINVDDCADVSHQVSAV 61 T E L ++I VE LG L G+ +G +RIYID DG+ +D CA VS QVS + Sbjct: 4 TFEDTLADIIRPEVEGLGCTLWGLASPSKGERRIIRIYIDGPDGVTIDQCAKVSRQVSLL 63 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA-- 119 L+VED I AY LEVSSPGLDR F+ A FVG++VT +L A RRK GV+K+ Sbjct: 64 LEVEDTIPGAYILEVSSPGLDRRFFSTAQMADFVGKQVTALLYEARDGRRKVTGVLKSIG 123 Query: 120 --VDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 E T+ G+D A +++++ LV F Sbjct: 124 ADAGQESFTLDEGGQDVTLAWNDLKEVRLVHEF 156 >UniRef50_A8ZZ67 Ribosome maturation factor rimP n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=RIMP_DESOH Length = 161 Score = 152 bits (384), Expect = 4e-36, Method: Composition-based stats. Identities = 48/152 (31%), Positives = 79/152 (51%), Gaps = 4/152 (2%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRG-RTSTLRIYIDS---EDGINVDDCADVSHQ 57 + + ++ +++ A G ELV +EF + + LR+Y+ S + G+ ++DCA +S Q Sbjct: 5 NPVVAQMWKLVEPVCSAEGMELVFVEFNKESQGRVLRLYLASGVPDRGVTLEDCAGISRQ 64 Query: 58 VSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI 117 V+ +LDV P Y LEVSS GL+RPL + RF G V + V +R+ + G++ Sbjct: 65 VNGLLDVYLPELDNYTLEVSSAGLERPLAKEIDFERFAGSRVKIRTAAPVSDRKNFTGIL 124 Query: 118 KAVDGEMITVTVEGKDEVFALSNIQKANLVPH 149 V + + V+ K V I +A LV Sbjct: 125 LGVSDGNVRLMVDDKTFVIPYGEITRAKLVNE 156 >UniRef50_B1CB57 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CB57_9FIRM Length = 172 Score = 151 bits (382), Expect = 8e-36, Method: Composition-based stats. Identities = 42/150 (28%), Positives = 83/150 (55%), Gaps = 2/150 (1%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDS-EDGINVDDCADVSHQVSA 60 + ++ + ++ G EL+ IEF + G LR+YI+ E +++D+ + V+ +S Sbjct: 21 KVIDRVEALSEDILKDNGCELIDIEFKKEGNNKVLRLYIERIEGKVSLDEISTVNRLLSD 80 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 +LD ED I Y LEVSSPG++R + + + +F G +V + L + ++++ G+++ Sbjct: 81 LLDEEDFIEEEYILEVSSPGVNRVIKKEKDFIKFKGSKVDVKLYKPLNGKKQFTGILEGY 140 Query: 121 DGEMITVTVEGKDEVFALSNIQKANLVPHF 150 + E + + ++G+ V +I K NL F Sbjct: 141 ENENVLIDLDGEHLVIPHKDISKVNLSFDF 170 >UniRef50_Q6AJY2 Ribosome maturation factor rimP n=1 Tax=Desulfotalea psychrophila RepID=RIMP_DESPS Length = 151 Score = 150 bits (379), Expect = 1e-35, Method: Composition-based stats. Identities = 51/145 (35%), Positives = 86/145 (59%), Gaps = 2/145 (1%) Query: 5 EQKLTEMITAPVEALGFELVGIEFI-RGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLD 63 +K+ + + ++++ ELV I+F G LR++ID E G+ +D CA VS +V LD Sbjct: 6 VEKIEGYVASVLQSMDVELVDIQFRCEGHGWVLRLFIDVEGGVTLDLCAQVSREVGQYLD 65 Query: 64 VEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGE 123 VED I AY+LEVSSPG++RPL + ++ RF G++ + L + + ++G+I V+ Sbjct: 66 VEDVIEQAYHLEVSSPGVERPLKSLANFERFAGKKARIKLHEPLNGEKTFEGIIGPVEDG 125 Query: 124 MITVTVEGKD-EVFALSNIQKANLV 147 +++ V+GK + + KA LV Sbjct: 126 EVSLLVDGKIAVKCGIEQLNKARLV 150 >UniRef50_B8FCY3 Ribosome maturation factor rimP n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=RIMP_DESAA Length = 152 Score = 150 bits (379), Expect = 2e-35, Method: Composition-based stats. Identities = 54/145 (37%), Positives = 78/145 (53%), Gaps = 1/145 (0%) Query: 6 QKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDV 64 +++ ++ A +EA G +LV EF R G LR+Y+D E GI + DC VS V +LD Sbjct: 2 EQVRKLTGAALEAEGMDLVLAEFKREGGGYILRLYVDKEGGITLGDCTMVSRYVGDLLDA 61 Query: 65 EDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEM 124 Y LEVSSPGLDRPL +H+ RF G +V + + R+K++GV+ + Sbjct: 62 YADEMPRYRLEVSSPGLDRPLTREDHFRRFEGRTALIVTKEPREGRKKFRGVLSGALNGV 121 Query: 125 ITVTVEGKDEVFALSNIQKANLVPH 149 IT+ + FAL I+ A L Sbjct: 122 ITLVADEVPMEFALHEIESARLQYK 146 >UniRef50_A5FV18 Ribosome maturation factor rimP n=2 Tax=Acetobacteraceae RepID=RIMP_ACICJ Length = 201 Score = 150 bits (379), Expect = 2e-35, Method: Composition-based stats. Identities = 52/150 (34%), Positives = 88/150 (58%), Gaps = 4/150 (2%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSED--GINVDDCADVSHQVS 59 + LE ++ E+I +E++G+ELV + + +T T++I D D +++DDC +SH VS Sbjct: 36 TGLEGRIAELIAPGLESIGYELVRVAIMGKQTPTVQIMADRADQTPLSLDDCERISHLVS 95 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQ-NRRKWQGVIK 118 AVLDV+DPI+ A+ LEVSS G+DRPL + + R+ G + L + R++ G + Sbjct: 96 AVLDVDDPISSAWTLEVSSAGIDRPLTRVKDWNRYAGHLARIDLDVPTASGRKRLTGTVL 155 Query: 119 AVDGEMITVTVE-GKDEVFALSNIQKANLV 147 D V ++ G+ ++I++A LV Sbjct: 156 GADEAQARVKLDSGETVDLPHAHIRRAKLV 185 >UniRef50_C8NBH5 BCR/YhbC family protein n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NBH5_9GAMM Length = 157 Score = 149 bits (378), Expect = 2e-35, Method: Composition-based stats. Identities = 63/154 (40%), Positives = 92/154 (59%), Gaps = 8/154 (5%) Query: 5 EQKLTEMITAPVEALGFELVGIEFIRGR-TSTLRIYIDSE-DGINVDDCADVSHQVSAVL 62 E+++TE++ VE++GFE VG+E+ + LRIY+D GI+++ +V+ V+ +L Sbjct: 4 EERVTELLKPVVESMGFEWVGVEYHHNSVNAILRIYVDRPEGGIDMEGVVEVTEAVNPIL 63 Query: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 DVEDPI Y LEVSSPGLDRPLF+ + RF GE + L V RR+++GVI++ D Sbjct: 64 DVEDPINAPYTLEVSSPGLDRPLFSFADFVRFTGETAKVHLHAPVGKRRRFEGVIESTDE 123 Query: 123 EM--ITVTVEG----KDEVFALSNIQKANLVPHF 150 IT V + +N+ KA LVP F Sbjct: 124 TAQRITFAVRQGRAVEAVEVDYANVDKARLVPVF 157 >UniRef50_Q2RMS3 Ribosome maturation factor rimP n=2 Tax=cellular organisms RepID=RIMP_RHORT Length = 225 Score = 149 bits (377), Expect = 3e-35, Method: Composition-based stats. Identities = 48/151 (31%), Positives = 83/151 (54%), Gaps = 12/151 (7%) Query: 8 LTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGI--NVDDCADVSHQVSAVLDVE 65 L +++ ++A+G+E+V + + + TL++ + DG+ V DC +S + A+LDVE Sbjct: 42 LEKLLAPTLDAMGYEVVRVTLLGSQNPTLQVMAERLDGVAMTVSDCETISRALGALLDVE 101 Query: 66 DPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGE-M 124 DPI Y+LE+SSPG+DRPL + YARF G E + ++ R+ +G++ +D + Sbjct: 102 DPIAGRYSLEISSPGIDRPLTRPKDYARFAGHEARIETDRLIEGHRRMKGLLLGIDEDRT 161 Query: 125 ITVT-VEGK--------DEVFALSNIQKANL 146 + + +EGK + I KA L Sbjct: 162 VRLRLIEGKAAEDGTLPEVEIPFGAIVKAKL 192 >UniRef50_A4X4N4 Ribosome maturation factor rimP n=3 Tax=Actinomycetales RepID=RIMP_SALTO Length = 220 Score = 149 bits (377), Expect = 3e-35, Method: Composition-based stats. Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 7/157 (4%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVS 59 +++ +L E++ V G++L + R GR +++ +D++ GI++D ADVS VS Sbjct: 35 LASRRARLHEVVEPVVGEAGYDLEELSISRAGRRHVVQVIVDADGGIDLDAVADVSRAVS 94 Query: 60 AVLDVE-----DPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLR-MAVQNRRKW 113 A LD D + Y LEVSSPG+ RPL H+ R G V + +R R+ Sbjct: 95 AALDAAEEARGDIVAGEYQLEVSSPGVSRPLTLPRHWRRNAGRLVRVTVRGGPDAGDRQL 154 Query: 114 QGVIKAVDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 G + D E + + + ++ + + + F Sbjct: 155 TGRVVEADDEQVVLETDAGRAGWSYAELGPGRVQVEF 191 >UniRef50_A5VCZ9 Ribosome maturation factor rimP n=8 Tax=Sphingomonadales RepID=RIMP_SPHWW Length = 186 Score = 149 bits (377), Expect = 3e-35, Method: Composition-based stats. Identities = 50/151 (33%), Positives = 83/151 (54%), Gaps = 5/151 (3%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGR-TSTLRIYIDSEDG--INVDDCADVSHQ 57 M+ + LT++I +ALG +LV + F G+ TL++ + D +++ DC +S + Sbjct: 1 MADIAA-LTKLIEPEAKALGLDLVRVAFFGGKSDPTLQVMAERPDTRQLDIADCEALSRR 59 Query: 58 VSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI 117 +S D DPI AY LEVSSPG+DRPL + +A + G + + L + R+++ G I Sbjct: 60 ISDKFDELDPIEDAYRLEVSSPGIDRPLTRVKDWADWSGFDARVKLAAPLDGRKQFDGRI 119 Query: 118 KAVDGEMITVTVEG-KDEVFALSNIQKANLV 147 A DG+ +T+ V + L+ I A L+ Sbjct: 120 VASDGDSVTLGVNKLGEVTVPLAQIASAKLI 150 >UniRef50_Q14K22 Ribosome maturation factor rimP n=15 Tax=Francisella RepID=RIMP_FRAT1 Length = 152 Score = 149 bits (377), Expect = 3e-35, Method: Composition-based stats. Identities = 57/151 (37%), Positives = 88/151 (58%), Gaps = 1/151 (0%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSA 60 M L L E++ LG+ L GIE + T+RI+ID E+G++VDDC VS ++SA Sbjct: 1 MKMLLDDLYEIVEPITADLGYILWGIEVVGSGKLTIRIFIDHENGVSVDDCQIVSKEISA 60 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 V DVEDP++ Y LEVSSPG++R +F VG V V V ++ K++GV++ V Sbjct: 61 VFDVEDPVSGKYILEVSSPGMNRQIFNIIQAQALVGFNVKAVTLAPVGSQTKFKGVLERV 120 Query: 121 DGEMITVTV-EGKDEVFALSNIQKANLVPHF 150 +G + + + +GK+ F ++K + P F Sbjct: 121 EGNNVILNLEDGKEISFDFDELKKLRVSPDF 151 >UniRef50_Q1IIT1 Ribosome maturation factor rimP n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=RIMP_ACIBL Length = 169 Score = 149 bits (376), Expect = 3e-35, Method: Composition-based stats. Identities = 54/165 (32%), Positives = 84/165 (50%), Gaps = 20/165 (12%) Query: 5 EQKLTEMITAPVEALGFELVGIEFIRGRT-STLRIYIDSEDGINVDDCADVSHQVSAVLD 63 +K+ E++ G E+V +EF G LRI ID +G+ DDC+ VS++VS +LD Sbjct: 4 IEKVREIVERVARDYGLEVVEVEFRGGGKARMLRITIDKPEGVTHDDCSHVSNEVSTILD 63 Query: 64 VEDPITVA-YNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 VED + A Y LEVSSPGLDR + + RF G V + R + R ++G +++ Sbjct: 64 VEDVVPGASYTLEVSSPGLDRKISKPADFERFTGSLVKVSTREPLDGNRHFEGRLESFAD 123 Query: 123 EMITVTVEG------------------KDEVFALSNIQKANLVPH 149 +T+ + + AL++++KANLVP Sbjct: 124 GKLTIDLNAVPQRGQKKQKGPKAPVVERKVEIALADVEKANLVPE 168 >UniRef50_D1Y7J0 Putative uncharacterized protein n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y7J0_9BACT Length = 165 Score = 149 bits (376), Expect = 3e-35, Method: Composition-based stats. Identities = 57/145 (39%), Positives = 85/145 (58%), Gaps = 2/145 (1%) Query: 6 QKLTEMITAPVEALGFELVGIEFIRGRTS-TLRIYIDSEDGINVDDCADVSHQVSAVLD- 63 +K++ + VE+LG+E VG E ++ S LR+YID + G+ +DDC + ++ A+LD Sbjct: 4 EKISGQLKTLVESLGYEFVGAETVKEAGSQILRVYIDRDGGVGLDDCERSAKEIGALLDT 63 Query: 64 VEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGE 123 D Y LEVSSPGL+RPLF AE YARF G V + L+ + RR+ VI+ V Sbjct: 64 AADAFEDHYLLEVSSPGLERPLFKAEDYARFAGRPVNVRLKGVYEGRRRVTAVIEGVKDG 123 Query: 124 MITVTVEGKDEVFALSNIQKANLVP 148 + + G+ L+ IQ+A+LV Sbjct: 124 SVLLDCGGEPLDLPLAEIQRAHLVY 148 >UniRef50_A5EWZ1 Ribosome maturation factor rimP n=1 Tax=Dichelobacter nodosus VCS1703A RepID=RIMP_DICNV Length = 155 Score = 149 bits (376), Expect = 4e-35, Method: Composition-based stats. Identities = 64/156 (41%), Positives = 92/156 (58%), Gaps = 7/156 (4%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGR-TSTLRIYIDS-EDGINVDDCADVSHQV 58 MS EQ +TE++ VE++GF G+E+ S LRIY+D+ E GI +DD ++ Q+ Sbjct: 1 MSQ-EQVVTELLRPIVESMGFIWWGLEYHYNSMNSILRIYVDTQEGGIGIDDIVTITEQL 59 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 + +LDVE PIT Y LEVSSPGLDR LFT +F+G V LR + +RK+QG++ Sbjct: 60 NPILDVEQPITTNYTLEVSSPGLDRILFTLAQCEQFIGATVHCRLRFPFEGKRKFQGIMT 119 Query: 119 AVDGE----MITVTVEGKDEVFALSNIQKANLVPHF 150 AVD + +T+ + + I KA +VP F Sbjct: 120 AVDHDKETISLTLADGAAEVHLPFTQIDKARIVPQF 155 >UniRef50_Q1GCH5 Ribosome maturation factor rimP n=5 Tax=Rhodobacterales RepID=RIMP_SILST Length = 203 Score = 148 bits (375), Expect = 4e-35, Method: Composition-based stats. Identities = 60/151 (39%), Positives = 91/151 (60%), Gaps = 5/151 (3%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDS-EDGINVDDCADVSHQVSA 60 + ++++L E+IT +E LG+ELV I + G+T+TL+I D + GI VDDCA +S+ VSA Sbjct: 9 AAIDRRLAEIITPVIEDLGYELVRIRLMSGKTTTLQIMADRPDGGIEVDDCAAISNAVSA 68 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 LDVEDPI AY LEVSSPG+DRPL + + F G E L + RR+++G + + Sbjct: 69 TLDVEDPILDAYTLEVSSPGIDRPLTRLKDFDMFEGYEAKLETADLIDGRRRFKGELAGI 128 Query: 121 DGEMITVTVE--GKDEVF--ALSNIQKANLV 147 + + + + +E G+ + A LV Sbjct: 129 EDDEVLINIEEHGETVTIGLKFDWLSDAKLV 159 >UniRef50_Q0C5Z8 Ribosome maturation factor rimP n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=RIMP_HYPNA Length = 199 Score = 147 bits (373), Expect = 8e-35, Method: Composition-based stats. Identities = 48/150 (32%), Positives = 84/150 (56%), Gaps = 3/150 (2%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG--INVDDCADVSHQV 58 ++ E++L ++ E LG E+V + GR L+I + G ++DCA +S + Sbjct: 4 LTEQERRLLSLVQPVAEGLGMEIVRLRVQGGRRPHLQIMAERAGGAPTGIEDCARLSRGM 63 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 S VL+ DPI+ AY LEVS+PG+DRPL +AR++G V + L + RR++ G I Sbjct: 64 SPVLEAADPISEAYTLEVSTPGIDRPLTRPGDFARWIGHAVRIELARPIDGRRRFTGTIT 123 Query: 119 AVDGEMITVTVEGKDEVF-ALSNIQKANLV 147 D + + ++ + ++ A+ + +A+LV Sbjct: 124 GEDNDGAHIELDDETKLVAAVHEMSRASLV 153 >UniRef50_B2IIK0 Ribosome maturation factor rimP n=19 Tax=Alphaproteobacteria RepID=RIMP_BEII9 Length = 314 Score = 147 bits (372), Expect = 1e-34, Method: Composition-based stats. Identities = 47/161 (29%), Positives = 85/161 (52%), Gaps = 15/161 (9%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSA 60 S + ++ + + LG LV ++ +T++I + DG ++V+ C VS +S Sbjct: 34 SGIAARVAVLAAPVLADLGLRLVRVKISGQNGTTVQIMAERPDGTMDVEACESVSEALSP 93 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 VLDVEDP+ AY+LE+SSPG+DRPL + R +G+EV + L+ + R++++G I + Sbjct: 94 VLDVEDPVKQAYHLEISSPGIDRPLVRLSDFERALGQEVRVELKTGLAGRKRFRGTIGPI 153 Query: 121 DGEM--------ITVT------VEGKDEVFALSNIQKANLV 147 + + +T E + + L ++ +A LV Sbjct: 154 EASSPIGGSKGALRLTRTDAKPEEETEVLLPLDDLHEARLV 194 >UniRef50_B5YJX5 Ribosome maturation factor rimP n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=RIMP_THEYD Length = 164 Score = 147 bits (372), Expect = 1e-34, Method: Composition-based stats. Identities = 49/160 (30%), Positives = 82/160 (51%), Gaps = 13/160 (8%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIE-FIRGRTSTLRIYIDSEDGINVDDCADVSHQVS 59 + L+ K+T+ E G E+V +E + G+ TLRI+ID E G+ + DC + S + Sbjct: 3 IKELKDKITDYANIVGEQEGVEIVNVEIYPGGKGLTLRIFIDKEGGVTIKDCENFSRAIE 62 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 A+LDVEDPI +Y LEVSSPG+DRPL + + R +G +V + + + + + G I Sbjct: 63 AILDVEDPIKSSYTLEVSSPGIDRPLKNKKDFLRNIGRDVKITTKEKIADNTFFIGKIVD 122 Query: 120 VDGEMITVTVEG------------KDEVFALSNIQKANLV 147 V + + + ++ + + I KA + Sbjct: 123 VGDDWVRIEIQETKIKGSKKKGKTELLFIPFNKIIKAQVY 162 >UniRef50_B9DPF1 Ribosome maturation factor rimP n=13 Tax=Bacillales RepID=RIMP_STACT Length = 155 Score = 147 bits (372), Expect = 1e-34, Method: Composition-based stats. Identities = 50/150 (33%), Positives = 85/150 (56%), Gaps = 5/150 (3%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVS 59 MS + +++ E+I ++ L FELV IEF + G+ LRI ID E G++++DC S ++S Sbjct: 1 MSKITEQIEEIIQPVLDDLNFELVEIEFTKEGKDHFLRISIDKEGGVDLNDCTLASEKIS 60 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 V++ EDPI Y L+V+SPG +RP+ T + V + V + L + ++W GV+++ Sbjct: 61 EVMNEEDPIEQMYYLDVASPGAERPIKTDKALHDAVEQPVFVSLYAPIDGSKEWLGVLQS 120 Query: 120 VDGEMITV----TVEGKDEVFALSNIQKAN 145 V + I + + K+ + I KA Sbjct: 121 VTDDHIVIKAQVKEKKKEVEIPRNKIAKAR 150 >UniRef50_B6FZB3 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FZB3_9CLOT Length = 154 Score = 147 bits (371), Expect = 1e-34, Method: Composition-based stats. Identities = 45/151 (29%), Positives = 84/151 (55%), Gaps = 2/151 (1%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTS-TLRIYIDSEDGINVDDCADVSHQVSA 60 S + ++ +M+TA + G+E V +E+++ LR+ +D E GI++++C +VS ++S Sbjct: 4 SEIVDRVEKMVTAITDEKGYETVDVEYVKEAGQFYLRVVVDKEGGISLNECEEVSRELSP 63 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 LD D I Y LEVSSPG+DR L + + ++ G +V + L A+ ++++G + + Sbjct: 64 KLDENDFIEENYYLEVSSPGIDRALKRDKEFVKYKGRDVEIKLYKAIDGVKQFEGELVGL 123 Query: 121 DGE-MITVTVEGKDEVFALSNIQKANLVPHF 150 D E I V + ++ F ++ L F Sbjct: 124 DEENNIVVIINNEEMKFNRKDVAIIRLAIKF 154 >UniRef50_A7HZ90 Ribosome maturation factor rimP n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=RIMP_PARL1 Length = 207 Score = 147 bits (371), Expect = 2e-34, Method: Composition-based stats. Identities = 50/151 (33%), Positives = 87/151 (57%), Gaps = 7/151 (4%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVL 62 + +++ E + AP E GFE+V + F TL+I + DG + V+DCA++S +SA+L Sbjct: 30 VARRVFEQLRAPAEGAGFEIVRVRFGVQDGQTLQIMAERPDGSMTVEDCAELSRMLSALL 89 Query: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 DVEDPI Y+LE+SS G+DRPL + + R+ G EV + L + R++++G+++ V+ Sbjct: 90 DVEDPIPGEYHLEISSAGIDRPLTRPKDFERWSGFEVKVGLSEPLSGRKRFRGILQGVED 149 Query: 123 EMITVTVEGKDEV------FALSNIQKANLV 147 + + V + + + +A LV Sbjct: 150 DEVLVECDIEGFSEPQVLGLPFRQLSEAKLV 180 >UniRef50_A1B584 Ribosome maturation factor rimP n=28 Tax=Bacteria RepID=RIMP_PARDP Length = 206 Score = 146 bits (370), Expect = 2e-34, Method: Composition-based stats. Identities = 63/155 (40%), Positives = 95/155 (61%), Gaps = 9/155 (5%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSE-DGINVDDCADVSHQVSA 60 + ++++L E+I+ +E LGFELV I G+T+TL+I D GINVDDCAD+S VSA Sbjct: 8 TAIDRRLAEIISPVIEDLGFELVRIRLQGGKTATLQIMADRPEGGINVDDCADISTAVSA 67 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 +LDVEDP+ AY+LEVSSPG+DRPL + + F G E L + R++++GV+ V Sbjct: 68 ILDVEDPLEDAYHLEVSSPGIDRPLTRLKDFETFEGYEARLETNQPIDGRKRFKGVLAGV 127 Query: 121 D----GEMITVTVE--GKDEVF--ALSNIQKANLV 147 + G+ + + +E G+ + + A LV Sbjct: 128 EKGEGGDEVLLNIEEGGETQTIGLNFDWLSDAKLV 162 >UniRef50_UPI0001C373AC hypothetical protein RflaF_02144 n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C373AC Length = 157 Score = 146 bits (370), Expect = 2e-34, Method: Composition-based stats. Identities = 47/149 (31%), Positives = 80/149 (53%), Gaps = 2/149 (1%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVL 62 EQK+ ++I + LG+ L + +++ G LRI+ID ++GI++DDC + +S +L Sbjct: 9 TEQKVYDLIKPITDELGYYLWDVCYVKEGAMWYLRIFIDQDEGISIDDCERATAPISDIL 68 Query: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 D DP+ Y LEV S GL+R L EH+ G+ VTL AV ++ + + D Sbjct: 69 DEADPVPQQYMLEVGSAGLERELVKEEHFEVCKGDTVTLKFFRAVDGEKEIRAELVGADK 128 Query: 123 EMIT-VTVEGKDEVFALSNIQKANLVPHF 150 + IT + +G ++ L+++ L F Sbjct: 129 DGITVIKEDGTEKTIPLADVSVVKLWLDF 157 >UniRef50_A8S8G3 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8S8G3_9FIRM Length = 161 Score = 146 bits (370), Expect = 2e-34, Method: Composition-based stats. Identities = 46/146 (31%), Positives = 70/146 (47%), Gaps = 2/146 (1%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVL 62 Q++ ++ VE +G L + F + G LRI ID + ++ D CA+VSH + +L Sbjct: 9 TAQRVEALVRPTVEGMGLRLWDVVFEKEGPDWYLRILIDRDGTMDTDTCAEVSHALDPIL 68 Query: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMA-VQNRRKWQGVIKAVD 121 D DPI +Y LEV SPGL R L EHY G++V L R+ G++ + Sbjct: 69 DEADPIDQSYYLEVGSPGLGRKLTRPEHYEALKGQKVRAKLIRPNADGVRELSGILTGRE 128 Query: 122 GEMITVTVEGKDEVFALSNIQKANLV 147 G +T+ E F ++ L Sbjct: 129 GSTVTLETENGPVTFEVNAASGVQLC 154 >UniRef50_Q3IYN8 Ribosome maturation factor rimP n=10 Tax=Rhodobacterales RepID=RIMP_RHOS4 Length = 204 Score = 146 bits (370), Expect = 2e-34, Method: Composition-based stats. Identities = 53/152 (34%), Positives = 88/152 (57%), Gaps = 6/152 (3%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDS-EDGINVDDCADVSHQVSA 60 + ++++L +++T +E +GFELV + + G+T TL+I D + GI VD+CA++S VSA Sbjct: 8 TAIDRRLADIVTPVIEGMGFELVRLRLMSGKTRTLQIMADRPDGGIVVDECAEISTAVSA 67 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 LDVEDPI Y LEVSSPG+DRPL + + + G E + + RR+++G + Sbjct: 68 ALDVEDPIEENYTLEVSSPGIDRPLTRLKDFEVWTGYEARIETTELIDGRRRFKGELAGT 127 Query: 121 DGEMITVTVEGK-----DEVFALSNIQKANLV 147 +G+ + +T+E + A L+ Sbjct: 128 EGDEVLITIEDGRDSYVTIGLKFDWLADAKLI 159 >UniRef50_A8IG16 Ribosome maturation factor rimP n=3 Tax=Rhizobiales RepID=RIMP_AZOC5 Length = 291 Score = 146 bits (370), Expect = 2e-34, Method: Composition-based stats. Identities = 49/153 (32%), Positives = 81/153 (52%), Gaps = 7/153 (4%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSA 60 S + ++ ++T + L LV ++ T +I + DG + +DDC S +S Sbjct: 19 SGVAARIAAIVTPVLADLNLRLVRVKVTARDGGTCQIMAERPDGSMTIDDCEAASRAISP 78 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 VLDVEDPIT AY LE+SSPG+DRPL + R+ G EV + + + V R++++G++ Sbjct: 79 VLDVEDPITGAYRLEISSPGIDRPLVRLTDFDRWAGHEVKVEMAVPVDGRKRFRGILIGT 138 Query: 121 DGEMITVTV------EGKDEVFALSNIQKANLV 147 E+ V E + +++I +A LV Sbjct: 139 RAELAVVKRTDAPKGEEPEVSLPVADIGEAKLV 171 >UniRef50_D2MK27 Putative uncharacterized protein n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MK27_9BACT Length = 157 Score = 145 bits (367), Expect = 4e-34, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 7/157 (4%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVS 59 M+ L + + +AL E++ +E G + +R+ ++ E G+ + DC + Sbjct: 1 MNGLGSLVQGIAEPIAKALRLEIIEVECHGQGAKTIVRVIVEKEGGVGIQDCEQFHQSLG 60 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 LDV DP+ AY L+VSSPGLDRPL + Y + VG + + + VQ + G + Sbjct: 61 RALDVADPVAHAYRLDVSSPGLDRPLKRRKDYDQAVGRTIRVKVHAPVQGKGTVVGQLAE 120 Query: 120 VDGEMITVTVE------GKDEVFALSNIQKANLVPHF 150 VD + IT+ V + I A L + Sbjct: 121 VDDQGITLQVPVRKSRTPRRVALEWDAIAHAKLEIEW 157 >UniRef50_B2KC93 Ribosome maturation factor rimP n=1 Tax=Elusimicrobium minutum Pei191 RepID=RIMP_ELUMP Length = 152 Score = 145 bits (366), Expect = 5e-34, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 80/153 (52%), Gaps = 4/153 (2%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFI-RGRTSTLRIYIDSEDGINVDDCADVSHQVS 59 M ++ + ++ + G+E+V + +G + ++D E GIN+DD S + Sbjct: 1 MRDIKA-IESVVADGLANQGYEVVDLIVQNQGSKKLFQFFVDKEGGINLDDVEKASRLID 59 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 +++++E+ I AY LE SSPG+ R L EH+ +F+G+ + L+ ++NR + G+I Sbjct: 60 SIIEMENLIEGAYILEASSPGIKRVLKKPEHFKKFIGQRAKITLKQMIENRANFTGLIAG 119 Query: 120 VDGEMITVTVEGKDEVFALSNIQKANL--VPHF 150 + +T+ F +I+KANL V F Sbjct: 120 ANETEMTLDDGTTQFKFKYEDIKKANLDPVLEF 152 >UniRef50_Q11BD1 Ribosome maturation factor rimP n=6 Tax=Rhizobiales RepID=RIMP_MESSB Length = 220 Score = 145 bits (366), Expect = 5e-34, Method: Composition-based stats. Identities = 51/148 (34%), Positives = 76/148 (51%), Gaps = 7/148 (4%) Query: 7 KLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVE 65 ++ ++ ++ALG+ LV + TL+I + DG + VDDC +VS VS LDVE Sbjct: 15 RVAAIVMPVLDALGYRLVRVRLSAQDGLTLQIMAERPDGTMTVDDCEEVSRAVSPALDVE 74 Query: 66 DPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMI 125 DPI AY LE+SSPG+DRPL + +G + + V R++++G I GE + Sbjct: 75 DPIDSAYQLEISSPGIDRPLVRLSDFQAALGHLAKVETSVMVDGRKRFRGQIVGCTGETL 134 Query: 126 TVTVEGKDE------VFALSNIQKANLV 147 T+ + E L I A LV Sbjct: 135 TIERDKVAEGEAPLAEIPLDAISDAKLV 162 >UniRef50_D1VSB6 Putative uncharacterized protein n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSB6_9FIRM Length = 153 Score = 145 bits (366), Expect = 6e-34, Method: Composition-based stats. Identities = 45/150 (30%), Positives = 82/150 (54%), Gaps = 1/150 (0%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRG-RTSTLRIYIDSEDGINVDDCADVSHQVSA 60 + + ++ ++ E LG+E+V IE+ +G + L I+I ++GI++DDC +SH + Sbjct: 4 KSFKNQIFKIAQVSAEELGYEIVDIEYQKGNKHDLLSIFIFKKEGIDLDDCTMMSHNIEK 63 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 LD + ++ Y LE+SSPGLDRP+ T + Y R + EV + L ++++ G++K Sbjct: 64 NLDNLEILSRPYYLEISSPGLDRPIKTKDDYRRNLENEVEVKLYGPYNGKKEYVGILKDY 123 Query: 121 DGEMITVTVEGKDEVFALSNIQKANLVPHF 150 + + + VE + + NI V F Sbjct: 124 NEHNVIICVENDNIEIPIKNISSMKQVIRF 153 >UniRef50_Q8RHJ4 Ribosome maturation factor rimP n=9 Tax=Fusobacterium RepID=RIMP_FUSNN Length = 156 Score = 145 bits (366), Expect = 6e-34, Method: Composition-based stats. Identities = 49/151 (32%), Positives = 97/151 (64%), Gaps = 4/151 (2%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDG-INVDDCADVSHQVS 59 + + +K+T ++ +E + LV +E+++ G +RI+I++ +G +N++DC+ +S ++ Sbjct: 5 NQIVEKITRIVNPFIEEMNLSLVDVEYVQDGGYWYVRIFIENLNGDLNIEDCSKLSSKIE 64 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 VE+ I + LEVSSPGL+RPL E Y RF+GE++TL L+ + ++++++ +IK Sbjct: 65 DK--VEELIEHKFFLEVSSPGLERPLKKLEDYTRFIGEKITLHLKHKLDDKKQFKTIIKE 122 Query: 120 VDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 V+G+ I ++ K+ + I+KAN++ F Sbjct: 123 VNGDNIIFLMDKKEVEIKFNEIRKANILFEF 153 >UniRef50_B1LX00 Ribosome maturation factor rimP n=6 Tax=Methylobacterium RepID=RIMP_METRJ Length = 257 Score = 145 bits (366), Expect = 6e-34, Method: Composition-based stats. Identities = 51/155 (32%), Positives = 83/155 (53%), Gaps = 9/155 (5%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGI-NVDDCADVSHQVSA 60 + + ++ + I P+ LGF LV + T++I + DG +DDC VS +S Sbjct: 18 AGVAARVAQAIEGPLAGLGFRLVRVRMSNVNGCTVQIMAERPDGTFTIDDCEAVSRAISP 77 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 +LDV+DP+ AYNLEVSSPG+DRPL +AR+ G E + L + R++++G++ A Sbjct: 78 ILDVDDPVGGAYNLEVSSPGIDRPLVRVSDFARWAGYEAKVELSPPLDGRKRFRGILGAP 137 Query: 121 DGEMITVTVE--------GKDEVFALSNIQKANLV 147 D TV ++ L ++ +A+LV Sbjct: 138 DPTGTTVPIDLPDVKEGLPSRIDLPLKDLAEAHLV 172 >UniRef50_C9LLP6 Putative uncharacterized protein n=1 Tax=Dialister invisus DSM 15470 RepID=C9LLP6_9FIRM Length = 156 Score = 144 bits (365), Expect = 6e-34, Method: Composition-based stats. Identities = 46/153 (30%), Positives = 79/153 (51%), Gaps = 4/153 (2%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAV 61 +E + ++ ++ LG EL+ +E++R R LR++ID EDG++++DC +S + + Sbjct: 4 KEIELEAERLLEPALKQLGIELIDVEYVRERNWILRVFIDKEDGVDLNDCQQISEKAGEL 63 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMA---VQNRRKWQGVIK 118 LD D I+ Y LEVSSPGLDR L + + R+ GEEV + L V + + V+ Sbjct: 64 LDEADLISANYMLEVSSPGLDRVLKKDKDFLRYAGEEVDVKLFAPLEEVGGVKAFTAVLD 123 Query: 119 AVDGEM-ITVTVEGKDEVFALSNIQKANLVPHF 150 + + I + + K I + + F Sbjct: 124 GLSDDGQIRLIFQDKTITLGKDKISQIRIHFSF 156 >UniRef50_Q0SSD0 Ribosome maturation factor rimP n=16 Tax=Clostridium RepID=RIMP_CLOPS Length = 154 Score = 144 bits (365), Expect = 7e-34, Method: Composition-based stats. Identities = 53/149 (35%), Positives = 84/149 (56%), Gaps = 2/149 (1%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIRGRT-STLRIYIDSED-GINVDDCADVSHQVSA 60 L L + V+ G++L IE+++ LR+YI+ + I++ DC VS +S Sbjct: 5 QLVADLEALCAPIVKEKGYDLYHIEYVKENNEYYLRLYIEKPEERISLRDCEIVSRALSD 64 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 +LD+EDPI AY LEVSSPGL+R L + EH+ RF+G+E+ + + ++ R+ +G++K V Sbjct: 65 MLDIEDPIKDAYFLEVSSPGLNRRLHSDEHFNRFIGKEIFVGFKSSLSGRKNVKGILKDV 124 Query: 121 DGEMITVTVEGKDEVFALSNIQKANLVPH 149 I V EG + I+ ANL Sbjct: 125 QENEIIVECEGNEIKVPKDKIKTANLEGE 153 >UniRef50_A7VT55 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VT55_9CLOT Length = 167 Score = 144 bits (364), Expect = 8e-34, Method: Composition-based stats. Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 2/133 (1%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVL 62 + + ++ V+ G EL + +++ G LR+YID ++G+ ++DC +VS + L Sbjct: 10 TVEAVWDLCEPIVKDFGLELWDVRYLKEGAQWYLRVYIDRQEGVTIEDCENVSRAIDEPL 69 Query: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQ-NRRKWQGVIKAVD 121 D DP+ +Y LEV SPGL+R L EH+ RF G V + L + R++ GV+ + Sbjct: 70 DRLDPVDQSYCLEVCSPGLERELVRPEHFQRFEGWPVMVKLIRPLDSGEREFNGVLGTYE 129 Query: 122 GEMITVTVEGKDE 134 + + V D Sbjct: 130 NGVFDLWVNETDV 142 >UniRef50_D2LJ62 Putative uncharacterized protein n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LJ62_RHOVA Length = 221 Score = 143 bits (363), Expect = 1e-33, Method: Composition-based stats. Identities = 47/147 (31%), Positives = 79/147 (53%), Gaps = 7/147 (4%) Query: 8 LTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVED 66 L +I +E +GF LV + + +T++I D DG INVDDCA +S ++S +LD D Sbjct: 32 LAALIEPVLEDMGFRLVRVTMSKRDGATIQIMADKADGAINVDDCAQISRRISPLLDAHD 91 Query: 67 PITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEM-- 124 PI Y LEVSSPG+DR L + + G E + L+ + R++++G+++ + Sbjct: 92 PIKDRYYLEVSSPGIDRILVRPSDFEDWAGFETKVELKELIDGRKRFRGILEGYENGEML 151 Query: 125 --ITVTVEGKDEVF--ALSNIQKANLV 147 + + +G+ + + I A LV Sbjct: 152 LQVQLDEKGEPQTIGLPVDLIHDAKLV 178 >UniRef50_Q97I55 Ribosome maturation factor rimP n=1 Tax=Clostridium acetobutylicum RepID=RIMP_CLOAB Length = 149 Score = 142 bits (360), Expect = 3e-33, Method: Composition-based stats. Identities = 53/132 (40%), Positives = 80/132 (60%), Gaps = 1/132 (0%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIRGRT-STLRIYIDSEDGINVDDCADVSHQVSAVL 62 + KL E+I VE+LG+E IE ++ LR+YID E+GI++DDC VS +S +L Sbjct: 1 MIDKLIEIIRPVVESLGYEFYHIEIVKEDGERYLRVYIDKENGISLDDCEKVSRAISDLL 60 Query: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 D +DPI +Y LEVSSPG+ R LFT EH +++G V + L+ +++ + G + V+ Sbjct: 61 DEKDPIPYSYYLEVSSPGIYRTLFTEEHLKKYIGNTVDIKLKSSLEKSTNYSGKLIDVNE 120 Query: 123 EMITVTVEGKDE 134 E I + V E Sbjct: 121 EDIVIVVSDNRE 132 >UniRef50_B2I724 Ribosome maturation factor rimP n=20 Tax=Xanthomonadaceae RepID=RIMP_XYLF2 Length = 199 Score = 142 bits (358), Expect = 5e-33, Method: Composition-based stats. Identities = 62/159 (38%), Positives = 91/159 (57%), Gaps = 9/159 (5%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFI-RGRTSTLRIYID------SEDGINVDDCAD 53 MS ++ ++ VE LGF+L+G E++ + LR+YID E +++DDC Sbjct: 1 MSDKGIEIVNLLAPKVEMLGFDLLGAEYLLVPSGAILRLYIDIPFAMQPECMVSIDDCER 60 Query: 54 VSHQVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKW 113 VS +VSA LD+E+PI+ Y LEVSSPGLDR LFT E +AR V + L++ R+ Sbjct: 61 VSREVSAYLDLEEPISGNYTLEVSSPGLDRRLFTLEQFARHHNHLVKVGLKLQQHGSRRL 120 Query: 114 QGVIKAVD--GEMITVTVEGKDEVFALSNIQKANLVPHF 150 QG I V+ G + + V G + +NI KA +VP + Sbjct: 121 QGKIVRVEQVGGFVVLLVNGVELAVDFNNIDKARIVPDW 159 >UniRef50_B9K861 Ribosome maturation factor rimP n=6 Tax=Thermotogaceae RepID=RIMP_THENN Length = 150 Score = 141 bits (357), Expect = 6e-33, Method: Composition-based stats. Identities = 47/149 (31%), Positives = 79/149 (53%), Gaps = 6/149 (4%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIRG-RTSTLRIYIDSEDG-INVDDCADVSHQVSAV 61 + +K+ + E G E+ I++ R R LR+ ID+ G ++V DC S ++ Sbjct: 6 IVEKVRKEAERIAEKQGLEIFDIQYRRESRGWVLRVVIDNPVGYVSVRDCELFSRELERF 65 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 LD ED I +Y LEVSSPGLDRPL + Y RF G+ ++ + + + + G I++ Sbjct: 66 LDREDLIEHSYTLEVSSPGLDRPLRGPKDYQRFTGKLAKIITK----DGKTFIGRIESFV 121 Query: 122 GEMITVTVEGKDEVFALSNIQKANLVPHF 150 ++T++ E + +++KANL F Sbjct: 122 DGIVTISDEKGKHEIDIEDVRKANLEIEF 150 >UniRef50_B9L6E1 Ribosome maturation factor rimP n=1 Tax=Nautilia profundicola AmH RepID=RIMP_NAUPA Length = 148 Score = 141 bits (357), Expect = 6e-33, Method: Composition-based stats. Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 9/147 (6%) Query: 5 EQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLD 63 +L ++I VE G +L IE G R+YI G++++DCA +++ +S + D Sbjct: 3 RSELNDIIKNIVEDNGCDLYDIELSEEGGHKYFRVYITKPGGVSLNDCAKINNLISPIFD 62 Query: 64 VEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGE 123 +EDP+ Y LEVSSPGL+R L EH+ + +GE+V + + K +G +K+ Sbjct: 63 IEDPVEGKYFLEVSSPGLERKLTKPEHFEKSIGEKVKVTT----NDGTKLKGELKSFIDN 118 Query: 124 MITVTVEGKDEVFALSNIQKANLVPHF 150 + + E +I+KA + Sbjct: 119 VAEI----GKEKVNFDDIKKAKTYIEW 141 >UniRef50_C0W7C6 YhbC family protein n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W7C6_9ACTO Length = 154 Score = 141 bits (356), Expect = 8e-33, Method: Composition-based stats. Identities = 53/153 (34%), Positives = 84/153 (54%), Gaps = 9/153 (5%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGI---NVDDCADVSHQ 57 + ++LTE++T VE G L G+E R GR ST+R+ +D DG ++D A+V+ Sbjct: 7 TATTERLTELLTPVVEQAGLFLEGVETTRAGRYSTVRVIVDLPDGPGDLDLDAVAEVTQT 66 Query: 58 VSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI 117 VS LD DP+ Y LEV+SPG +R L T + R G + LV + G + Sbjct: 67 VSDALDEADPVKGQYTLEVTSPGAERELTTPRTFRRATGHQARLVTA-----GQTLTGTV 121 Query: 118 KAVDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 ++ D E +TV V+G ++ A +++ +A +V F Sbjct: 122 RSADEETVTVEVDGSEQTIAYTDLLEARMVVVF 154 >UniRef50_B1GZN4 Ribosome maturation factor rimP n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=RIMP_UNCTG Length = 151 Score = 140 bits (355), Expect = 9e-33, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 71/147 (48%), Gaps = 2/147 (1%) Query: 5 EQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLD 63 Q++ +++ E+V +++ + RI+ID + G+ + DC ++S A LD Sbjct: 4 VQEIEDLLAPVAAREKIEIVDVQYSKKAGDWVARIFIDKDSGVTISDCENISCIFGAFLD 63 Query: 64 VEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGE 123 D + +Y LE+SSPG R L + + + RF+G + + + N+R + G + D Sbjct: 64 ESDILKDSYVLEISSPGFKRVLKSEKSFRRFIGSKTRIRTFKPINNQRNFLGTLLNFDDG 123 Query: 124 MITV-TVEGKDEVFALSNIQKANLVPH 149 I + V S+I+KAN+ Sbjct: 124 RIKINDVTNGVVEIEFSDIRKANIEAD 150 >UniRef50_A6LMV9 Ribosome maturation factor rimP n=1 Tax=Thermosipho melanesiensis BI429 RepID=RIMP_THEM4 Length = 147 Score = 140 bits (355), Expect = 1e-32, Method: Composition-based stats. Identities = 46/151 (30%), Positives = 71/151 (47%), Gaps = 7/151 (4%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFI-RGRTSTLRIYIDSE-DGINVDDCADVSHQV 58 M + ++ ++ E EL +++ + L I ID+ D I+ DC +VS ++ Sbjct: 1 MKDIVSQVKDIAQKICEEFHLELFDVKYYNKSGRWFLEIIIDNPYDYISTKDCENVSRKL 60 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 LD + I Y L VSSPGL+RPL + + RF G++ + R + G IK Sbjct: 61 EFELDKINIIPNKYYLTVSSPGLNRPLRNVKDFERFTGKKAKIKTREN-----TYIGYIK 115 Query: 119 AVDGEMITVTVEGKDEVFALSNIQKANLVPH 149 V +IT +GK F I+KANL Sbjct: 116 NVVDNIITFETDGKFIEFKFEEIKKANLEID 146 >UniRef50_C5BWS6 Ribosome maturation factor rimP n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=RIMP_BEUC1 Length = 162 Score = 140 bits (354), Expect = 1e-32, Method: Composition-based stats. Identities = 46/153 (30%), Positives = 67/153 (43%), Gaps = 9/153 (5%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGIN---VDDCADVSHQ 57 + L +L +++ G L + GR +R+ +D DG +D AD S Sbjct: 7 TALLGRLRDLLEPVAAGCGLHLEDVAVSPAGRRRRVRVTLDLADGPGALGSNDLADASRA 66 Query: 58 VSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI 117 VSA LD D +T Y LEVS+PG DRPL H+ R G VTL L G + Sbjct: 67 VSAALDDADVVTGPYVLEVSTPGTDRPLTQPRHFRRAQGRLVTLTLAA----GTHVSGRL 122 Query: 118 KAVDGEMITVTVE-GKDEVFALSNIQKANLVPH 149 + D + I V + G FA +++ + Sbjct: 123 LSADDDGIHVRTDAGATTTFAYADVATGRVEVE 155 >UniRef50_C1SH19 Uncharacterized conserved protein n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SH19_9BACT Length = 169 Score = 139 bits (351), Expect = 3e-32, Method: Composition-based stats. Identities = 51/142 (35%), Positives = 75/142 (52%), Gaps = 6/142 (4%) Query: 15 PVEALGFELVGIEFIRGRTS-TLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPI--TVA 71 + G EL + R LRI ID E G ++DC + S +SA LD ED I Sbjct: 28 VLSEKGLELFDMTLRSERGGKVLRITIDKETGPGIEDCTEASRAISAFLDGEDNIVPLDK 87 Query: 72 YNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQ-NRRKWQGVIKAVDGEMITVTVE 130 Y+LEVS+PGL+RPL + + + R G++ ++ + R+ + G I +VD +T+ VE Sbjct: 88 YHLEVSTPGLERPLRSQQDFVRQTGKKCKIITVNKDESGRKSYTGKIDSVDDSKVTLYVE 147 Query: 131 GKD--EVFALSNIQKANLVPHF 150 + +L NI KANLV F Sbjct: 148 KESAAFEISLDNISKANLVVEF 169 >UniRef50_C9RKT2 Putative uncharacterized protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RKT2_FIBSS Length = 150 Score = 139 bits (351), Expect = 3e-32, Method: Composition-based stats. Identities = 47/149 (31%), Positives = 77/149 (51%), Gaps = 8/149 (5%) Query: 5 EQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLD 63 ++KL +I ++ LV + R G+ TLRI+ID +G+ +DDC +VSH +S LD Sbjct: 4 QEKLNSLIADACKSASVTLVEADVFRAGKRKTLRIFIDKPEGVTIDDCTNVSHFLSDALD 63 Query: 64 VE-DPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 ++ + I AY LEVSSPG+DRPL + + R G + + + G + D Sbjct: 64 LDPELIEGAYTLEVSSPGIDRPLKSMADFERNKGRLLRVT----RSTGKPVTGELLNADE 119 Query: 123 EMITVTVEG--KDEVFALSNIQKANLVPH 149 E +T+ ++G + V S + A + Sbjct: 120 ENLTLKLKGNAGEIVIPRSEVLSAKVEVE 148 >UniRef50_A7ZC71 Ribosome maturation factor rimP n=3 Tax=Campylobacter RepID=RIMP_CAMC1 Length = 138 Score = 138 bits (350), Expect = 4e-32, Method: Composition-based stats. Identities = 45/140 (32%), Positives = 65/140 (46%), Gaps = 6/140 (4%) Query: 12 ITAPVEALGFELVGIEFIRGRTSTL-RIYIDSEDGINVDDCADVSHQVSAVLDVEDPITV 70 + + G EL E + R+YI + G+++DDC VS +S + DV P++ Sbjct: 4 LDKLIRECGVELYDSEIANENGRAIFRVYITKDGGVSLDDCEKVSRLLSPIFDVTPPVSG 63 Query: 71 AYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTVE 130 YNLEVSSPGL+R L H+ VGE V + K+ G + D E I V E Sbjct: 64 DYNLEVSSPGLERKLSKPSHFKASVGELVKVQTEA-----EKFAGRLVKADEESIAVENE 118 Query: 131 GKDEVFALSNIQKANLVPHF 150 +S I+KA + Sbjct: 119 EGIFEINISEIKKAKTYLEW 138 >UniRef50_A1SLL0 Ribosome maturation factor rimP n=2 Tax=Actinomycetales RepID=RIMP_NOCSJ Length = 175 Score = 138 bits (350), Expect = 4e-32, Method: Composition-based stats. Identities = 42/146 (28%), Positives = 75/146 (51%), Gaps = 6/146 (4%) Query: 7 KLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVE 65 ++ + P+ ALG ++ +E G+ LR+ +D + G+ +D+ A+ + +V+ VLD Sbjct: 12 QIEAELDDPLRALGLDIEAVEITPAGKRRILRVAVDKDGGVTLDEVAEATREVNRVLDGS 71 Query: 66 DPI-TVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEM 124 + + Y LEV+S G+DRPL H+ R G V + A + R G I + E Sbjct: 72 EVMGEQPYTLEVTSRGVDRPLTLPRHWRRNAGRLVKV----AFADGRAATGRILDSNEEQ 127 Query: 125 ITVTVEGKDEVFALSNIQKANLVPHF 150 +T+ V G + A + ++KA + F Sbjct: 128 VTLDVGGTRQQVAYAEVKKALVQVEF 153 >UniRef50_C3WCG0 Putative uncharacterized protein n=6 Tax=Fusobacterium RepID=C3WCG0_FUSMR Length = 160 Score = 138 bits (350), Expect = 4e-32, Method: Composition-based stats. Identities = 45/152 (29%), Positives = 88/152 (57%), Gaps = 5/152 (3%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDG-INVDDCADVSHQVS 59 + +K+ +++T V +G LV IE+++ G +RIY+++ +G I +++CA +S ++ Sbjct: 8 QKIIEKIEKIVTPVVNEMGLSLVDIEYMQDGGYWYVRIYVENLNGEITLEECAAISGKID 67 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 DV+ I + LEVSSPG++RPL E + RF GE++ + L+ + +++ ++G+I Sbjct: 68 E--DVDKLIEQRFFLEVSSPGIERPLKKIEDFIRFKGEKIKVSLKHKINDKKSFEGIITE 125 Query: 120 VDGEMITV-TVEGKDEVFALSNIQKANLVPHF 150 +I + E S ++KAN++ F Sbjct: 126 CKDNIIFLEIEEENIVEIPFSEVKKANIIYEF 157 >UniRef50_A6Q228 Ribosome maturation factor rimP n=3 Tax=Epsilonproteobacteria RepID=RIMP_NITSB Length = 142 Score = 138 bits (349), Expect = 5e-32, Method: Composition-based stats. Identities = 42/144 (29%), Positives = 73/144 (50%), Gaps = 5/144 (3%) Query: 8 LTEMITAPVEALGFELVGIEFIRGRTSTL-RIYIDSEDGINVDDCADVSHQVSAVLDVED 66 L + I VE+ G +L IE + R T+ R+ I + +G+++ C ++S+ +S +LDV Sbjct: 3 LEQEIKQIVESCGAKLYDIETVSDRGKTIYRVTITAPEGVDLQKCVEISNLISPLLDVHP 62 Query: 67 PITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMIT 126 P++ YNLEVSSPG++R L H+ VGE+V + + +GV+ +T Sbjct: 63 PVSGDYNLEVSSPGVERKLKKPSHFEHSVGEKVRVT----KNDGETIEGVLSDFRDHTLT 118 Query: 127 VTVEGKDEVFALSNIQKANLVPHF 150 + + L I A + + Sbjct: 119 LQTKNGPIEIPLDQITYAKTIFEW 142 >UniRef50_D2SDW9 Putative uncharacterized protein n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2SDW9_9ACTO Length = 196 Score = 138 bits (349), Expect = 5e-32, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 15/161 (9%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVL 62 + ++ ++ VEA G++L + GR S +R+ +D + G+ +DD A+VS VS L Sbjct: 10 VATRMAGLVAPVVEAAGYDLEELVVTPAGRRSIVRVVVDRDAGVTLDDVAEVSRAVSTAL 69 Query: 63 DVED--PITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 D D + Y LEV+SPG+DRPL H+ R G VT+ + + + + V Sbjct: 70 DEHDGEFGSAPYVLEVTSPGVDRPLTEPRHWRRNTGRLVTVAVGRE-GSSEQVTARVLEV 128 Query: 121 DGEMITVTVEGK-----------DEVFALSNIQKANLVPHF 150 DG+ +T+ VE K + + F Sbjct: 129 DGDGVTLAVEAKGKPGAKKRPPTRRQVPWQELGAGRVQVEF 169 >UniRef50_C6NSC0 Transcription termination protein NusA-like protein n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NSC0_9GAMM Length = 176 Score = 138 bits (348), Expect = 7e-32, Method: Composition-based stats. Identities = 62/149 (41%), Positives = 91/149 (61%), Gaps = 2/149 (1%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDG-INVDDCADVSHQVSAV 61 LE++L E I A+G +V + +R GR+ TL+++I+ ++G + ++DCA VS Q+S Sbjct: 28 LEERLLEGIAEQAAAMGCGVVDVRLLRVGRSVTLQVFIEKDEGAVTIEDCAAVSRQLSVW 87 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 LDVE+PI AY LEVSSPGLDRPL + RFVG + LR RR+W+G + Sbjct: 88 LDVENPIAGAYRLEVSSPGLDRPLKREADFQRFVGALAEIELRGLRDGRRRWRGRLLLAS 147 Query: 122 GEMITVTVEGKDEVFALSNIQKANLVPHF 150 + + V+G + F L+ I KA LVP + Sbjct: 148 PGSVALDVDGVRQEFLLAEILKAKLVPEW 176 >UniRef50_B0T164 Ribosome maturation factor rimP n=6 Tax=Alphaproteobacteria RepID=RIMP_CAUSK Length = 199 Score = 137 bits (347), Expect = 7e-32, Method: Composition-based stats. Identities = 50/145 (34%), Positives = 83/145 (57%), Gaps = 5/145 (3%) Query: 8 LTEMITAPVEALGFELVGIEFIRGR-TSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVE 65 L E++ E++G+E+V + + G L+I + DG +NV+DCA +S +S +LD Sbjct: 11 LVELLDPVAESVGYEIVRLRLMGGAEQRRLQIMAERPDGDMNVEDCAKLSRAISEILDAA 70 Query: 66 DPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMI 125 DPI+ Y LEVSSPG+DRPL + + + G EV + L + R++++G + V+ + Sbjct: 71 DPISGEYTLEVSSPGVDRPLTRLKDFETYAGLEVRIELDRVAEGRKRFKGELAGVEDGQV 130 Query: 126 TVTVEGKDEV---FALSNIQKANLV 147 + +EG+D+ F I A LV Sbjct: 131 GLNLEGEDDTTVYFPFEWIVDAKLV 155 >UniRef50_C7H124 Putative uncharacterized protein n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H124_9FIRM Length = 187 Score = 137 bits (347), Expect = 8e-32, Method: Composition-based stats. Identities = 49/185 (26%), Positives = 79/185 (42%), Gaps = 36/185 (19%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDS------------------ 42 +E + E A + L E+ +E+ R G+ LR+YID Sbjct: 3 KEIENAVEEACKAKLAELSLEIYSVEYKREGKDWILRVYIDRMFCEDAVGIGYDKQAGMN 62 Query: 43 -----------------EDGINVDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGLDRPL 85 E I +D+C +S +S LD D I Y LEVS+PG+DR L Sbjct: 63 TDARCQKAQGIKADSKREKPIGIDECTAISEAISEYLDKNDIIDNNYYLEVSTPGIDREL 122 Query: 86 FTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTVEGKDEVFALSNIQKAN 145 + RF G V + L + +++++G + + E I V V+ +VF+ +++ K N Sbjct: 123 KKDIDFIRFKGRSVDISLYKRIDGQKEYRGTLIEKNDEGIAVEVDESTKVFSNNDVAKVN 182 Query: 146 LVPHF 150 L F Sbjct: 183 LAIEF 187 >UniRef50_C5NYH1 Putative uncharacterized protein n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NYH1_9BACL Length = 154 Score = 137 bits (346), Expect = 1e-31, Method: Composition-based stats. Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 5/153 (3%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIRGRTST-LRIYIDSEDGINVDDCADVSHQVSAV 61 ++ +K+ + T E F L +E+++ T LRIY D + G+ +DDC +S +++ Sbjct: 2 SIVEKVKAIATKQAENTEFSLYDVEYVKEGTEYFLRIYFDKDGGLTLDDCVLLSEKLAEE 61 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 LD ED I+ Y LEVSSPG++R L E VG+ V + + N++++ G I AV+ Sbjct: 62 LDKEDFISDKYYLEVSSPGIERDLRDLEEVTNSVGKHVYIKTYEKIDNQKEFYGDILAVE 121 Query: 122 GEMITVTVEGKDE----VFALSNIQKANLVPHF 150 GE ITV + K S I K L F Sbjct: 122 GEEITVEYKDKARVKKSTINYSKIAKIRLAVKF 154 >UniRef50_C0QHM0 Ribosome maturation factor rimP n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=RIMP_DESAH Length = 155 Score = 137 bits (346), Expect = 1e-31, Method: Composition-based stats. Identities = 45/147 (30%), Positives = 69/147 (46%), Gaps = 1/147 (0%) Query: 2 STLEQKLTEMITAPVEALGFELVGIE-FIRGRTSTLRIYIDSEDGINVDDCADVSHQVSA 60 + + + + A GFELV +E +RIY+D GI +DDC ++ + Sbjct: 9 NPIVTAIESIAEPLCIAEGFELVHVECVSDQGGMIVRIYLDKPGGITLDDCVHMTRHLGD 68 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 ++DVE AY LE+SSPG RPL + RF+G V + + R K+ G++ V Sbjct: 69 IIDVELEEISAYRLEISSPGAKRPLKKLADFERFLGSRVKVEAVEPIGGRLKFTGILSKV 128 Query: 121 DGEMITVTVEGKDEVFALSNIQKANLV 147 + V V + VF I K+ L Sbjct: 129 QDGCVEVVVNNEPVVFHFEQISKSRLA 155 >UniRef50_B8DN15 Ribosome maturation factor rimP n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=RIMP_DESVM Length = 226 Score = 137 bits (345), Expect = 1e-31, Method: Composition-based stats. Identities = 58/191 (30%), Positives = 85/191 (44%), Gaps = 41/191 (21%) Query: 1 MST--LEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYID----------------- 41 MST L + + T +ALG L GIE I G LR+Y+D Sbjct: 1 MSTYPLRDAVAAIATPLADALGIALWGIEIIDGGRMVLRVYVDAKPGMPVPADTAEATES 60 Query: 42 -----------SEDGINVDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEH 90 + +G+ +D CA +S Q+ LDVED + AY LEVSSPGL+RP F Sbjct: 61 ATPEGVALEGSTPEGVTIDQCARLSRQLGLALDVEDVVRDAYVLEVSSPGLERPFFEIAQ 120 Query: 91 YARFVGEEVTLVLRMAV---QNRRKWQGVIKAVDGEMITV--------TVEGKDEVFALS 139 +VG + L L + RRK++ I V+G+ +T + A Sbjct: 121 VVPYVGRTIELTLAVPHPEWPGRRKFRADIVRVEGDTLTFLPDTAPRPDEDPAPISVAWD 180 Query: 140 NIQKANLVPHF 150 +++KA+L+ F Sbjct: 181 DVKKAHLIHVF 191 >UniRef50_C7HSS3 Putative uncharacterized protein n=1 Tax=Anaerococcus vaginalis ATCC 51170 RepID=C7HSS3_9FIRM Length = 152 Score = 137 bits (345), Expect = 1e-31, Method: Composition-based stats. Identities = 52/149 (34%), Positives = 74/149 (49%), Gaps = 5/149 (3%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAV 61 L KL E + + + LG+ELV IEF+ G+ LR +I + GI +DDC S+ +S Sbjct: 8 DLISKLKENLESDINGLGYELVDIEFVNEGKNKILRFFIYKDGGITIDDCEKTSNFLSER 67 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 LD D I Y LEVSSP L RPL T R E + + L+ N K+ G IK + Sbjct: 68 LDEIDLIKSFYYLEVSSPDLSRPLKTDRDLERNKDELLEIKLK----NGEKFIGKIKEIK 123 Query: 122 GEMITVTVEGKDEVFALSNIQKANLVPHF 150 + T+E + + S I+ + F Sbjct: 124 ENSLIFTLENEQKEIEKSEIKTIKIEIVF 152 >UniRef50_C9M6Q7 Putative uncharacterized protein n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M6Q7_9BACT Length = 173 Score = 137 bits (345), Expect = 1e-31, Method: Composition-based stats. Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 1/148 (0%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVL 62 L +LT ++ V LG+ G++ + T+R++ID +G+ DDC VS + +L Sbjct: 7 ALRGELTALLKPVVVELGYRWEGLQLEEIGSMTVRVFIDGPNGVTADDCEVVSKAIDPLL 66 Query: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 + + Y LEVSSPGL+R LF + Y RF+GE + + ++ GV++AVD Sbjct: 67 EGAMADSNRYYLEVSSPGLERFLFELDDYRRFIGETARIRFHGEGSHIKRLTGVVEAVDE 126 Query: 123 EM-ITVTVEGKDEVFALSNIQKANLVPH 149 E +T+ E + +I + +LV Sbjct: 127 EGRVTIHTEEETAAIPFEDIVEGSLVYK 154 >UniRef50_Q5HX28 Ribosome maturation factor rimP n=18 Tax=Campylobacter RepID=RIMP_CAMJR Length = 140 Score = 137 bits (345), Expect = 2e-31, Method: Composition-based stats. Identities = 47/142 (33%), Positives = 72/142 (50%), Gaps = 7/142 (4%) Query: 12 ITAPVEALGFELVGIEFIRGRTSTL-RIYIDSEDGINVDDCADVSHQVSAVLDVEDPITV 70 + A + G E + + RIY+ E G+N+DDCA +S +S + DVE P+ Sbjct: 3 LEALCKEAGLSFYDDELVSENGRKIYRIYVQKEGGVNLDDCARLSEILSPIFDVESPVNG 62 Query: 71 AYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVT-- 128 Y LEVSSPGL+R L EH+A+ +GE V + + K++ I AVD E IT+ Sbjct: 63 EYFLEVSSPGLERKLSKIEHFAKSIGELVKITTNE----KEKFEAKIIAVDDENITLENL 118 Query: 129 VEGKDEVFALSNIQKANLVPHF 150 + ++I+KA + Sbjct: 119 ENKEKTTINFNDIKKARTFVEW 140 >UniRef50_C6XRW8 Putative uncharacterized protein n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XRW8_HIRBI Length = 203 Score = 136 bits (344), Expect = 2e-31, Method: Composition-based stats. Identities = 50/149 (33%), Positives = 88/149 (59%), Gaps = 2/149 (1%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVS 59 +S +E+++ ++I ++G E+V + + T L+I + DG ++V+DCA +S + Sbjct: 4 LSEIEKRILDIIEPEATSIGLEIVRVRMMGANTPILQIMAEKPDGTMDVEDCAKLSRAIG 63 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 VLDVEDPI YNLEVSSPG+DRPL +A + EV + L + + RR++ G I Sbjct: 64 PVLDVEDPIHSEYNLEVSSPGIDRPLTREGDFANWKTYEVRIELGIPIDGRRRFHGTITD 123 Query: 120 VDGEMITVTV-EGKDEVFALSNIQKANLV 147 ++++ + +G ++ ++ KA+LV Sbjct: 124 EVNGIVSLDLKDGSKAEISIVDMVKASLV 152 >UniRef50_A8ST27 Putative uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8ST27_9FIRM Length = 129 Score = 136 bits (344), Expect = 2e-31, Method: Composition-based stats. Identities = 42/126 (33%), Positives = 70/126 (55%), Gaps = 2/126 (1%) Query: 25 GIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGLDR 83 +E+++ G LR+Y D E GI ++DC V+ + +LD ED I+ AY LEVSSPGL R Sbjct: 2 DVEYVKEGSDYYLRVYADKEGGITINDCEIVNRALGDLLDQEDYISDAYILEVSSPGLTR 61 Query: 84 PLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTVEGK-DEVFALSNIQ 142 PL + R +G+ V + + + ++++GV+KA D +T+ E + + + +I Sbjct: 62 PLKKENDFKRSIGKVVEIKTFVKINGAKEFEGVLKAYDDATVTIEFEDETEVTISRKDIS 121 Query: 143 KANLVP 148 L Sbjct: 122 MIRLAF 127 >UniRef50_A6WWW8 Ribosome maturation factor rimP n=37 Tax=Rhizobiales RepID=RIMP_OCHA4 Length = 224 Score = 136 bits (343), Expect = 2e-31, Method: Composition-based stats. Identities = 50/153 (32%), Positives = 76/153 (49%), Gaps = 7/153 (4%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSA 60 + ++ K+ +I + LGF LV + TL+I + DG + VDDC VS V+ Sbjct: 25 TGIDAKVASIIEPVINTLGFRLVRVRLSGLNGQTLQIMAERPDGTMTVDDCELVSRTVAP 84 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 VLDVEDPI+ Y+LE+SSPG+DRPL +A + G + + + R+K++G I Sbjct: 85 VLDVEDPISGKYHLEISSPGIDRPLVRKSDFADWAGHIAKVETSVVHEGRKKFRGRIVLG 144 Query: 121 DGEMITVTVE------GKDEVFALSNIQKANLV 147 D E + + + I A LV Sbjct: 145 DAESVVIESDQISYGSEPVVRIPFDLISDARLV 177 >UniRef50_C6HXJ9 Putative uncharacterized protein n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HXJ9_9BACT Length = 171 Score = 136 bits (343), Expect = 3e-31, Method: Composition-based stats. Identities = 43/147 (29%), Positives = 74/147 (50%), Gaps = 4/147 (2%) Query: 6 QKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVE 65 ++LTE IT ++++G L + + LR+++D +G+ +D VS +VS +LDV Sbjct: 11 ERLTEEITLLLDSMGLTLYDLVLPKKSGGVLRVFVDGPEGVTIDQIESVSRRVSVLLDVL 70 Query: 66 DPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMI 125 DP Y+LEVSSPGLDR L E + G+ V+L L A++ ++ +G I +V Sbjct: 71 DPFPGRYHLEVSSPGLDRLLKIPEDLRKNEGKWVSLKLVDAIEGQKVLKGRIGSVGDAGF 130 Query: 126 TVTVEGKDE----VFALSNIQKANLVP 148 + V+ + ++ Sbjct: 131 FLHVDAGKKSRILEVPFLQLRSVQAEF 157 >UniRef50_Q7MQU0 Ribosome maturation factor rimP n=1 Tax=Wolinella succinogenes RepID=RIMP_WOLSU Length = 142 Score = 136 bits (343), Expect = 3e-31, Method: Composition-based stats. Identities = 49/143 (34%), Positives = 75/143 (52%), Gaps = 8/143 (5%) Query: 9 TEMITAPVEALGFELVGIEFIRGR-TSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDP 67 E I V++ G L + ++ S LR+YI E G+++DDCA VS +S +LDVEDP Sbjct: 7 QEKIEKLVQSCGCNLYDLLLLKENERSILRLYITKEVGVSLDDCAMVSDLISPLLDVEDP 66 Query: 68 ITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITV 127 + Y LEVSSPG++RPL HY +GE + ++ + +G I+A D + + Sbjct: 67 LAGEYFLEVSSPGIERPLKRPAHYQHALGELARIKF----ADKNEIEGEIEAADETSVKL 122 Query: 128 TVEGKDEVFALSNIQKANLVPHF 150 +E S I+KA + Sbjct: 123 ---KGEEPIPYSLIKKAQTFYRW 142 >UniRef50_C4DMD6 Uncharacterized conserved protein n=4 Tax=Actinomycetales RepID=C4DMD6_9ACTO Length = 164 Score = 135 bits (342), Expect = 3e-31, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 11/153 (7%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIRGRTSTL-RIYIDSEDGINVDDCADVSHQVSAVL 62 +++ ++ + G++L ++ + TL R+ +D + G+++D A VS +S L Sbjct: 7 TRKRILAVLEPVLAEAGYDLEELKVSQAGRRTLVRVLVDRDAGVDLDAIASVSRVLSKAL 66 Query: 63 DVEDPITVA-----YNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI 117 D + Y LEVSSPG+DRPL H+ R VG V++ L A I Sbjct: 67 DKSEADDGPFATNSYTLEVSSPGVDRPLTLPRHWRRNVGRLVSVRLSDA-----TVTARI 121 Query: 118 KAVDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 A D E + + + A ++ + F Sbjct: 122 HAADDENVELELSDGTRRVAYGDLGPGRVQLEF 154 >UniRef50_Q6MMS8 Ribosome maturation factor rimP n=1 Tax=Bdellovibrio bacteriovorus RepID=RIMP_BDEBA Length = 174 Score = 135 bits (342), Expect = 3e-31, Method: Composition-based stats. Identities = 46/159 (28%), Positives = 83/159 (52%), Gaps = 15/159 (9%) Query: 7 KLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSE--DGINVDDCADVSHQVSAVLD 63 K+ ++ A G L IEF+ G+ TLR++ID E I+++DC +VS +S +LD Sbjct: 10 KVEKIANDVAAAQGCVLYDIEFVGLGKGRTLRLFIDREEEGAISIEDCTNVSRGLSEILD 69 Query: 64 VEDPI--TVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQ----------NRR 111 ++ + YNLEVS+PGLDR L H+ + +G++V + A++ N + Sbjct: 70 ADEEMIPGGEYNLEVSTPGLDRHLKKPWHFKKAIGKKVYIKTTKALESVGVEDKKWKNAK 129 Query: 112 KWQGVIKAVDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 + V+++ D + + V+ + + I +A LV + Sbjct: 130 TVEEVLESADEQGVRFVVKDVEIKIPYAMIDRAKLVFEY 168 >UniRef50_D1PLN8 Putative uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLN8_9FIRM Length = 163 Score = 135 bits (342), Expect = 3e-31, Method: Composition-based stats. Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 3/146 (2%) Query: 5 EQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLD 63 + + ++ VE +G L + F + G LR+ ID ++ ++ D C VS + +LD Sbjct: 11 AKTVETLVRPTVEGMGLRLWDVRFEKEGPDWFLRVLIDRDEPLDTDTCEAVSRAIDPILD 70 Query: 64 VEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQ-NRRKWQGVIKAVDG 122 DPI +Y LEV SPGL R L EHY G++ L + RR G+++ +DG Sbjct: 71 EADPIDQSYYLEVGSPGLGRRLTRPEHYEALRGQKCAAHLIRPDEAGRRDVAGILQGLDG 130 Query: 123 EM-ITVTVEGKDEVFALSNIQKANLV 147 E +T+ + F + L Sbjct: 131 EGNVTLVDGEETYTFPVKAAGYVKLC 156 >UniRef50_Q07V75 Ribosome maturation factor rimP n=14 Tax=Bradyrhizobiaceae RepID=RIMP_RHOP5 Length = 272 Score = 135 bits (340), Expect = 6e-31, Method: Composition-based stats. Identities = 45/139 (32%), Positives = 77/139 (55%), Gaps = 7/139 (5%) Query: 16 VEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVEDPITVAYNL 74 + +G+ LV I+ T++I + DG + ++DC +S +S VLDV DPI AY L Sbjct: 49 LHGMGYRLVRIKVSGELGCTVQIMAERPDGTMLIEDCEAISKALSPVLDVADPIDKAYRL 108 Query: 75 EVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTVEGKD- 133 EVSSPG+DRPL + R+ G V + + + Q R++++G++ ++G+ + + EG Sbjct: 109 EVSSPGIDRPLVRRSDFERYAGYLVKIDMAVPHQGRKRFRGILGGIEGDAVHLQREGVRG 168 Query: 134 -----EVFALSNIQKANLV 147 + + +I A LV Sbjct: 169 DDDPAVLLTIEDISDARLV 187 >UniRef50_C3XMY5 Putative uncharacterized protein n=1 Tax=Helicobacter winghamensis ATCC BAA-430 RepID=C3XMY5_9HELI Length = 150 Score = 135 bits (340), Expect = 6e-31, Method: Composition-based stats. Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 7/152 (4%) Query: 3 TLEQKLTEMITAPVEALGFELVGI-EFIRGRTSTLRIYIDSE---DGINVDDCADVSHQV 58 T+ L + I VE+LGF+L + LRI I +++DDC +VS + Sbjct: 2 TISPNLEDKIKVLVESLGFDLYDVLTLKENENQILRICITKNMESKSVSLDDCQEVSLAL 61 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 S +LDVE P Y LEVSSPG++R L T HY + E + + + +++++G + Sbjct: 62 SPLLDVEMPDFEKYYLEVSSPGIERVLKTLAHYKGAINELIKVKTLQEIAGKKEFKGKLV 121 Query: 119 AVDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 +V ++ + L+ I+KA + Sbjct: 122 SVSESVLVLE---NGVEIPLNAIKKAQTYFEW 150 >UniRef50_Q47D92 Ribosome maturation factor rimP n=2 Tax=Betaproteobacteria RepID=RIMP_DECAR Length = 146 Score = 134 bits (339), Expect = 6e-31, Method: Composition-based stats. Identities = 54/146 (36%), Positives = 84/146 (57%), Gaps = 6/146 (4%) Query: 8 LTEMITAPVEALGFELVGIEFIRGRTSTLRIYID---SEDGINVDDCADVSHQVSAVLDV 64 L ++ V LG+ELV +E R T+R++ID E GI+V+DCA VS+Q++ V +V Sbjct: 3 LNTLLETTVVGLGYELVDVEMSP-RGRTIRVFIDAPAKETGIDVEDCAKVSNQLTRVFEV 61 Query: 65 EDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEM 124 E+ LE+SSPGLDR + A + RF G+E+ + +R+ RR +QG + + Sbjct: 62 ENF--DFDRLEISSPGLDRVVKKAADFERFSGQEIQIKVRIPQGGRRNFQGELLGLKDGK 119 Query: 125 ITVTVEGKDEVFALSNIQKANLVPHF 150 + + + D +NI+KA LVP F Sbjct: 120 VGLRLAKDDVELEFTNIEKARLVPRF 145 >UniRef50_B1VYN8 Ribosome maturation factor rimP n=13 Tax=Streptomyces RepID=RIMP_STRGG Length = 167 Score = 134 bits (339), Expect = 7e-31, Method: Composition-based stats. Identities = 56/159 (35%), Positives = 75/159 (47%), Gaps = 11/159 (6%) Query: 1 MSTLE-QKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQV 58 MST + ++L ++ V A +L IE R GR LRI +DSE+G+ +D CA++S + Sbjct: 1 MSTTQSERLRGLLEPLVSAQQLDLEEIEVSRAGRRGVLRIIVDSEEGVELDACAELSRAI 60 Query: 59 SAVLDVEDPI-TVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI 117 S LD D + Y LEVSSPG DRPL HY R G L A + I Sbjct: 61 SEKLDETDAMGEGEYVLEVSSPGADRPLTEHRHYVRATGRLARFHL--AGDGSGELVARI 118 Query: 118 KAVDGEMITVTVEGKD------EVFALSNIQKANLVPHF 150 AVD E + + V G A I +A + F Sbjct: 119 LAVDEEGLDLEVPGVKGRKPTARRLAFDEIARARVEIEF 157 >UniRef50_C5F193 Putative uncharacterized protein n=2 Tax=Helicobacter RepID=C5F193_9HELI Length = 143 Score = 134 bits (339), Expect = 8e-31, Method: Composition-based stats. Identities = 47/148 (31%), Positives = 79/148 (53%), Gaps = 8/148 (5%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIRGR-TSTLRIYIDSEDGINVDDCADVSHQVSAVL 62 + Q+L I VE+ G ++ I ++ LRI I + +++DDC +VS +S +L Sbjct: 3 ISQELQAKIQKLVESFGCKIYDITTLKENENQILRISITKKPSVSLDDCQEVSLALSPLL 62 Query: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 DVE P Y LEVSSPG++RPL T EH+ +GE + + ++ ++G + A+D Sbjct: 63 DVEIPNFEKYYLEVSSPGIERPLKTKEHFEDAIGELIKIKTIS----KQDFKGKLIAIDD 118 Query: 123 EMITVTVEGKDEVFALSNIQKANLVPHF 150 E + + E+ +S I+KA + Sbjct: 119 ESLKLE---SGEIIPISEIKKAQTYFEW 143 >UniRef50_A3ER83 Putative uncharacterized protein n=2 Tax=Leptospirillum sp. Group II RepID=A3ER83_9BACT Length = 167 Score = 134 bits (338), Expect = 9e-31, Method: Composition-based stats. Identities = 38/146 (26%), Positives = 70/146 (47%), Gaps = 4/146 (2%) Query: 7 KLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVED 66 + + + + LG L + ++++D G+ +D VS ++S +LDV D Sbjct: 2 RFEKELDHILTPLGLSLHDLVLPGKNRGVFKVFVDHPQGVGLDQLEAVSRRISDLLDVLD 61 Query: 67 PITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMIT 126 P Y LEVSSPGLDR L E VG+ + + ++ Q +R ++G I +++ ++ Sbjct: 62 PFPGKYRLEVSSPGLDRVLRIPEDLLLHVGKHIKVKMKEPFQGQRVFRGTIGSLEAGVLL 121 Query: 127 V-TVEGKDE---VFALSNIQKANLVP 148 + +VEGK + L + + Sbjct: 122 ISSVEGKKQLKHSIPLDLVAEVRAEF 147 >UniRef50_B8GX01 Ribosome maturation factor rimP n=4 Tax=Caulobacteraceae RepID=RIMP_CAUCN Length = 191 Score = 134 bits (338), Expect = 1e-30, Method: Composition-based stats. Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 11/154 (7%) Query: 5 EQKLTEMITAPVEALGFELVGIEFIRG-RTSTLRIYIDSE-------DGINVDDCADVSH 56 ++ L EM+ E+LG+E+V + + G L+I + +NV+DCA +S Sbjct: 8 DRDLIEMLDPVAESLGYEIVRLRLMGGTEQRRLQIMAEHPLLEDGSGGDMNVEDCAKLSR 67 Query: 57 QVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGV 116 VS VLD DPI Y LEVSSPG+DRPL + + + G E + L + R++++G Sbjct: 68 AVSEVLDAADPIAGEYTLEVSSPGIDRPLTRLKDFDDYAGLEARIELDRVAEGRKRFKGE 127 Query: 117 IKAVDGEMITVTVEGK---DEVFALSNIQKANLV 147 + V+ + + + +EG+ F + + A LV Sbjct: 128 LAGVEDDQVGLNIEGEDDVTVYFPFAWVIDAKLV 161 >UniRef50_C0W0C2 Protein of hypothetical function DUF150 n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W0C2_9ACTO Length = 168 Score = 133 bits (336), Expect = 2e-30, Method: Composition-based stats. Identities = 48/164 (29%), Positives = 80/164 (48%), Gaps = 19/164 (11%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG---INVDDCADVSHQV 58 + +E+K+ + + V+A G L ++ + +RI +D E+G ++ DD +VS ++ Sbjct: 4 TAIEEKVLDCVEPVVKAQGLFLEDVKVSERSETVVRIIVDLEEGTYLVSSDDLQEVSWKI 63 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 S LD DPI AY LE+S+PG +R L T HY R + V + L ++ + +G I+ Sbjct: 64 SEALDAADPIEQAYTLEISTPGAERKLHTPRHYRRSLNRLVEIKL----ADKSELRGFIR 119 Query: 119 AVDGEMITVTVE------------GKDEVFALSNIQKANLVPHF 150 V +T+ E GK + NI KA + F Sbjct: 120 EVGESELTLEEEAKAPKPGMKPKPGKLVTVSFENISKARVRVDF 163 >UniRef50_D0XR54 Putative uncharacterized protein n=1 Tax=Brevundimonas subvibrioides ATCC 15264 RepID=D0XR54_9CAUL Length = 232 Score = 133 bits (335), Expect = 2e-30, Method: Composition-based stats. Identities = 44/148 (29%), Positives = 82/148 (55%), Gaps = 5/148 (3%) Query: 5 EQKLTEMITAPVEALGFELVGIEFIRGR-TSTLRIYIDS--EDGINVDDCADVSHQVSAV 61 ++++ E+I +++G +V + + G L++ + ++ I+V +CA +S +S V Sbjct: 43 DREILELIDPVADSIGLSIVRVRLMGGTLRRRLQVMAERPSDNDIDVGECARLSRAMSEV 102 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 LD DPI Y LEVSSPG+DRPL + + F G E L ++ R++++G++ D Sbjct: 103 LDAADPIAGEYLLEVSSPGIDRPLTRLKDFDLFEGLEARLESDRMIEGRKRFKGILAGTD 162 Query: 122 GEMITVTVEGKDEV--FALSNIQKANLV 147 G+ I + ++G+D+ + A LV Sbjct: 163 GDNIAIDLDGEDDTALIPFDWLVDAKLV 190 >UniRef50_B1MZH7 Ribosome maturation factor rimP n=3 Tax=Leuconostoc RepID=RIMP_LEUCK Length = 158 Score = 133 bits (335), Expect = 2e-30, Method: Composition-based stats. Identities = 50/156 (32%), Positives = 78/156 (50%), Gaps = 7/156 (4%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDG--INVDDCADVSHQV 58 + + Q+++ +I + A L + + + G LRI ID + I +DD + V Sbjct: 3 NKVAQEISTLIEPLINAQQLLLWDVSYTKEGGQKVLRILIDKRNHEFITMDDITTFTQAV 62 Query: 59 SAVLD--VEDPITVAYNLEVSSPGLDRPLFTAEHYA--RFVGEEVTLVLRMAVQNRRKWQ 114 + +LD DPI AY L++SSPG DRPL HY + GE + + +A ++KWQ Sbjct: 63 NELLDTIEPDPIPEAYMLDISSPGADRPLIRPWHYEWAKASGENILVAFFVAKNGQKKWQ 122 Query: 115 GVIKAVDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 G I+ +D + IT+T + V I KA L F Sbjct: 123 GKIETIDDKGITLTTSSETIVCTFDEIAKAVLDTQF 158 >UniRef50_D0MI89 Putative uncharacterized protein n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MI89_RHOM4 Length = 160 Score = 133 bits (335), Expect = 2e-30, Method: Composition-based stats. Identities = 38/151 (25%), Positives = 70/151 (46%), Gaps = 3/151 (1%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIRGRT-STLRIYIDSEDGINVDDCADVSHQVSAV 61 L +++ + ++ F L+ + R + I+ID + G ++ D +S ++ + Sbjct: 10 ALIEQIRARVEEVLQGTTFFLIDVVVRGRRGAHVVEIFIDGDRGPSLRDLEQLSREIGFL 69 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRM-AVQNRRKWQGVIKAV 120 LD +D + Y L VSSPG+DRPL Y + VG E+ + L A + +G ++ Sbjct: 70 LDSDDLLPGPYTLNVSSPGVDRPLVHPRQYPKHVGRELEVKLVAVADAPAERLRGTLQRA 129 Query: 121 DGEMITVTV-EGKDEVFALSNIQKANLVPHF 150 D E I + + +G IQ A + + Sbjct: 130 DAEAIELRLPDGSQRRLRYEEIQSARVCLPW 160 >UniRef50_A8YVR1 Ribosome maturation factor rimP n=20 Tax=Lactobacillus RepID=RIMP_LACH4 Length = 158 Score = 132 bits (334), Expect = 3e-30, Method: Composition-based stats. Identities = 43/158 (27%), Positives = 80/158 (50%), Gaps = 8/158 (5%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGRT-STLRIYIDS-EDGINVDDCADVSHQV 58 MS + + ++ ++ G LV +E+++ + + LRIY+D +GI++D+ A +S V Sbjct: 1 MSKVVDLVRPVVETIIDEHGDMLVDMEYVKEKGQNYLRIYVDRQPNGIDIDEIAALSELV 60 Query: 59 SAVLDVEDP--ITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGV 116 S LD DP + Y LE+SSPG +RP+ T + R + + V + L + +++ ++G Sbjct: 61 SEKLDTIDPDPLPDPYVLELSSPGAERPIKTEADWKRALNDYVHIGLYQKIDDKKVYEGT 120 Query: 117 IKAVDGEMITVTVEGKDE----VFALSNIQKANLVPHF 150 +K + + I + V+ K I K F Sbjct: 121 LKYYNNDEIVLEVKDKTRRKKLTIPRKLIAKIRFAIEF 158 >UniRef50_C7H6A0 Protein associated with NUS operon n=2 Tax=Clostridiales RepID=C7H6A0_9FIRM Length = 163 Score = 132 bits (334), Expect = 3e-30, Method: Composition-based stats. Identities = 51/148 (34%), Positives = 77/148 (52%), Gaps = 4/148 (2%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDD--CADVSHQVSA 60 Q++ ++ VE +G L + F + G LR+ ID DG +D CADVSH + Sbjct: 9 TAQRVEALVRPTVEGMGLRLWDVVFEKEGPDWYLRVLIDKTDGTTMDTDTCADVSHALDP 68 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNR-RKWQGVIKA 119 +LD DPI +Y LEV SPGL R L EHY G++V++ L A +N +++ G++ + Sbjct: 69 ILDEADPIEQSYYLEVGSPGLGRKLTRPEHYEAVQGQKVSVRLYRANENGVKEFSGLLTS 128 Query: 120 VDGEMITVTVEGKDEVFALSNIQKANLV 147 +G IT+ F LS + L Sbjct: 129 REGNTITLEGPAGPMQFELSAVSTVRLC 156 >UniRef50_C5CEP0 Putative uncharacterized protein n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CEP0_KOSOT Length = 167 Score = 132 bits (333), Expect = 3e-30, Method: Composition-based stats. Identities = 47/153 (30%), Positives = 77/153 (50%), Gaps = 4/153 (2%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGRTS-TLRIYIDSEDG-INVDDCADVSHQV 58 M L +KL ++ E LG+E+ + F +GR L + ID EDG I++ DC + S Sbjct: 14 MYELTEKLRKLAEEVAEELGYEIYKLTFGKGRRRAVLTVAIDKEDGYISISDCENFSRAF 73 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 LD + I+ +YNL + SPG +R L + RF G+ V +VL+ ++NR G + Sbjct: 74 EKKLDETEIISSSYNLVIESPGAERELRKPGDFMRFTGKSVKIVLKEPLENRSVLVGQLI 133 Query: 119 AVDGEMITVTVEG--KDEVFALSNIQKANLVPH 149 + +++T+ + I+KANL Sbjct: 134 NANEDLVTIIEADSNRTFEVEYRMIKKANLRLE 166 >UniRef50_B0VFB7 Putative uncharacterized protein n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VFB7_9BACT Length = 156 Score = 132 bits (333), Expect = 3e-30, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 2/149 (1%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFI-RGRTSTLRIYIDSEDGINVDDCADVSHQVS 59 M ++ E+ + + + IE G+ + +Y+ G+ +D+CA S+ + Sbjct: 1 MEFYRAQVEEIARKICQEMHLAVYDIEEKMSGKGRIITVYLTKIGGVTLDECAAFSNALG 60 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 L++ D I Y LEVSSPGL+RPL HY + E+V + + + R+ G + Sbjct: 61 KELEIFDLIPERYFLEVSSPGLERPLKLKSHYVSAINEKVAVQFQAGEE-RKSIMGTLTE 119 Query: 120 VDGEMITVTVEGKDEVFALSNIQKANLVP 148 V+ + I + G +I +A V Sbjct: 120 VNQDTIVIDDRGSVTEIPFKSIIRAKTVF 148 >UniRef50_C8PIF5 Putative uncharacterized protein n=1 Tax=Campylobacter gracilis RM3268 RepID=C8PIF5_9PROT Length = 139 Score = 132 bits (333), Expect = 4e-30, Method: Composition-based stats. Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 5/140 (3%) Query: 12 ITAPVEALGFELVGIEFIRGRTSTL-RIYIDSEDGINVDDCADVSHQVSAVLDVEDPITV 70 + A G +L +E + T+ RI I G+ +DDC +S +S + DVE P+ Sbjct: 4 LEALARECGVQLYDVETVSENGRTIYRISITKAGGVGLDDCERLSRLLSPIYDVEPPLEG 63 Query: 71 AYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTVE 130 + LEV SPGL+R L +H+A VGE V L + + +K G + +G ++ + + Sbjct: 64 EWTLEVGSPGLERKLSKPQHFANSVGELVRL----SCTDGQKLSGEVLDCEGGVLRLRTD 119 Query: 131 GKDEVFALSNIQKANLVPHF 150 G + L I+KA + Sbjct: 120 GGEVSVRLDEIKKARTYVQW 139 >UniRef50_A8SMZ9 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SMZ9_9FIRM Length = 154 Score = 132 bits (333), Expect = 4e-30, Method: Composition-based stats. Identities = 40/149 (26%), Positives = 79/149 (53%), Gaps = 1/149 (0%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRG-RTSTLRIYIDSEDGINVDDCADVSHQVSA 60 + L + + + + G V +E+++ + + LRI+ID + G+++D C S+ +S Sbjct: 5 NELLKTIEKNFKTILLEKGIYFVNVEYVKEPKGNVLRIFIDKDGGVDLDSCEMTSNIISD 64 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 LD DPI +Y LEVSSPG++R + + E F+G++V + + N +++ G +K+ Sbjct: 65 WLDEVDPIEDSYFLEVSSPGVEREIKSDEQLKTFIGKKVLVKCYKKINNEKEFIGYLKSF 124 Query: 121 DGEMITVTVEGKDEVFALSNIQKANLVPH 149 D E +T+ + +F+ +I Sbjct: 125 DREKLTLEIGKSSIIFSRKDIAIIKSQIE 153 >UniRef50_A1UU47 Ribosome maturation factor rimP n=5 Tax=Bartonella RepID=RIMP_BARBK Length = 209 Score = 132 bits (333), Expect = 4e-30, Method: Composition-based stats. Identities = 43/149 (28%), Positives = 80/149 (53%), Gaps = 5/149 (3%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVL 62 +E + ++ ++ LG+ LV ++ + TL+I + DG + ++DC +S +S +L Sbjct: 24 VEALVVALVAPLLKPLGYRLVRVKLLGLNGLTLQIMAERADGTMTIEDCEIISKTISPLL 83 Query: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 DV++ I Y+LE+SSPG+DRPL + + G + R V RRK++G ++ V Sbjct: 84 DVQNVIERKYHLEISSPGIDRPLVRKSDFFHWQGYTAKIETRTIVNGRRKFRGALENVTQ 143 Query: 123 EMITVTVEG----KDEVFALSNIQKANLV 147 + + ++ + + SNI A+LV Sbjct: 144 DGFILNIDAAPEEETVYVSFSNITNAHLV 172 >UniRef50_B7IDT7 Ribosome maturation factor rimP n=1 Tax=Thermosipho africanus TCF52B RepID=RIMP_THEAB Length = 148 Score = 132 bits (332), Expect = 5e-30, Method: Composition-based stats. Identities = 46/152 (30%), Positives = 70/152 (46%), Gaps = 8/152 (5%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFI-RGRTSTLRIYIDSE-DGINVDDCADVSHQV 58 M + K+ E+ + + EL I++ + L I ID+ D ++ DC ++S +V Sbjct: 1 MKEIVSKVKEIAESACKKYNLELFDIKYYNKSGKWFLEIVIDNPLDYVSTKDCENISREV 60 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 LD D I Y L VSSPGLDRPL + + + RF+ +V + L G IK Sbjct: 61 EFQLDKLDIIPQRYYLTVSSPGLDRPLRSIDDFKRFINNKVKIKLEN-----ETIIGYIK 115 Query: 119 AVDGEMITVTVEGKDE-VFALSNIQKANLVPH 149 V +I + K + I+KANL Sbjct: 116 DVKDSVIFLEENNKKIKEIKYNQIKKANLEID 147 >UniRef50_Q1MQZ0 Ribosome maturation factor rimP n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=RIMP_LAWIP Length = 196 Score = 131 bits (331), Expect = 6e-30, Method: Composition-based stats. Identities = 42/175 (24%), Positives = 82/175 (46%), Gaps = 26/175 (14%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYID---------------SEDGI 46 + L + +T++I+ + A G +L GIE I ++I++D + I Sbjct: 4 AALIETITQLISPLITAQGLKLWGIELINIPQPIIKIFVDTIETNRLHENNIINSKSEQI 63 Query: 47 NVDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRM- 105 ++ CA +S + L+VE+ + LEVSSPGL+R FT + + ++ ++ + L+ Sbjct: 64 TIEQCASLSRLIGLTLEVEELFPNKWTLEVSSPGLERSFFTIQQLSNYINHDIDVTLKEQ 123 Query: 106 --AVQNRRKWQGVIKAVDGEMITVTV--------EGKDEVFALSNIQKANLVPHF 150 NR+K+ G + ++ + + E ++ ++KA LV HF Sbjct: 124 HPLWPNRKKFYGTLISITDNTFMLNLSLAHRKSDEPENVSINWQQVRKATLVHHF 178 >UniRef50_Q6FF42 Ribosome maturation factor rimP n=21 Tax=Moraxellaceae RepID=RIMP_ACIAD Length = 174 Score = 131 bits (331), Expect = 6e-30, Method: Composition-based stats. Identities = 73/171 (42%), Positives = 93/171 (54%), Gaps = 22/171 (12%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFI-RGRTSTLRIYIDSE---------------- 43 +S Q L ++I V+A L GIEFI +G+ S LRI+ID Sbjct: 3 LSNKTQALHDLIAPAVQACDVNLWGIEFIPQGKRSLLRIFIDKPVDETAEPVLNEDGETE 62 Query: 44 --DGINVDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTL 101 GI V DC V+ QV A+LDV DPI+ Y LEVSSPG DRP F E + ++G++V L Sbjct: 63 LGRGIGVQDCVRVTQQVGAILDVHDPISGEYALEVSSPGWDRPFFQLEQMSAYIGQQVAL 122 Query: 102 VLRMAVQNRRKWQGVIKAVD--GEMITVTVEGKDE-VFALSNIQKANLVPH 149 L AV+NRRK+Q + VD EMI V V+GK NI KANL+ Sbjct: 123 RLISAVENRRKFQAKLLLVDLENEMIQVEVDGKHVLEIDSHNIDKANLIYQ 173 >UniRef50_UPI0001C31DB5 protein of unknown function DUF150 n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31DB5 Length = 139 Score = 131 bits (331), Expect = 6e-30, Method: Composition-based stats. Identities = 39/148 (26%), Positives = 76/148 (51%), Gaps = 11/148 (7%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSA 60 MS +++++ ++ E++ E + G +T+R++ID DG++++ C V+H ++ Sbjct: 1 MSRIQEQIETTLSKT--EPEVEVLLAEVLGG--TTVRLFIDHPDGVSLELCERVTHHLAG 56 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 I Y LEVSSPG +RPL H+ R++G+ + R A + + G + Sbjct: 57 -------IRERYGLEVSSPGSERPLTKPAHFRRYLGQRARVRTRGAHGGQGSFTGELVGA 109 Query: 121 DGEMITVTVEGKDEVFALSNIQKANLVP 148 + +T+ E + I+++NLVP Sbjct: 110 NESEVTIAAETGVVAIPYTEIKRSNLVP 137 >UniRef50_C4XIM4 Putative uncharacterized protein n=2 Tax=Desulfovibrio RepID=C4XIM4_DESMR Length = 189 Score = 131 bits (331), Expect = 7e-30, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 14/163 (8%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEF-IRGRTSTLRIYIDSED---------GINVDDC 51 + + + ++I LG + G+E G +R+Y+D G+ +D+C Sbjct: 5 NAVADAVRDLIAPYAATLGLAVWGVELASAGHRQLVRLYLDLAADTPRTPERLGVTIDEC 64 Query: 52 ADVSHQVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRR 111 A VS + A+L+V++ Y LEVSSPGL R F A +VG E+ L + + R+ Sbjct: 65 ARVSRHLGALLEVDEIFHNPYVLEVSSPGLSRRFFEAGQLLAYVGREIEAKLAVPREGRK 124 Query: 112 KWQGVIKAVDGEMI--TVTVEGKDEVFALS--NIQKANLVPHF 150 +++G++ V + + TV K+ + K L+ F Sbjct: 125 RFKGILSGVSDQTVSMTVDPGAKEFSISFDFAEADKIRLIHAF 167 >UniRef50_C8W721 Putative uncharacterized protein n=3 Tax=Atopobium RepID=C8W721_ATOPD Length = 164 Score = 131 bits (331), Expect = 7e-30, Method: Composition-based stats. Identities = 45/152 (29%), Positives = 79/152 (51%), Gaps = 6/152 (3%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIRG-RTSTLRIYIDSED----GINVDDCADVSHQV 58 + QK+ + ++V +E + + +R+ ID +D I++D+ A + + Sbjct: 6 VTQKILSALEQAALNHHIDIVDVEIVGSSKNPLVRVRIDHDDETEETISLDEVAQETSWI 65 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 S +D DP ++ LEVSSPG+ RPL A+ + RF G+EV L A + RRK+ G + Sbjct: 66 SETIDELDPFPASFTLEVSSPGMARPLRRAKDFVRFAGQEVQLQT-TATEGRRKFTGTLL 124 Query: 119 AVDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 ++G I++ E + LS ++K + P F Sbjct: 125 GIEGTTISIQTEDEVCTIDLSELKKCVIKPAF 156 >UniRef50_C3RL59 Putative uncharacterized protein n=4 Tax=Bacteria RepID=C3RL59_9MOLU Length = 167 Score = 131 bits (330), Expect = 8e-30, Method: Composition-based stats. Identities = 46/154 (29%), Positives = 70/154 (45%), Gaps = 6/154 (3%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIRGRT-STLRIYIDSEDG-INVDDCADVSHQVSA 60 L + +I +E L IE+++ LRI+++ +G +++D C VS +S Sbjct: 14 ELLDTIKTLIKPILENNDVYLDDIEYLQENGEWYLRIFVEKNEGSLDMDTCVAVSEAISL 73 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 +D EDPI Y LEVSSPG+++PL T E VG+ V + +G IK + Sbjct: 74 KMDEEDPIKGEYYLEVSSPGVEKPLKTFEQVKASVGKYVYAKFINPTAGMDEVEGFIKTI 133 Query: 121 DGEMITVTV----EGKDEVFALSNIQKANLVPHF 150 + E I K SNI+ L F Sbjct: 134 EDETIEFEYLVKNIKKRIKIDYSNIKFIRLAVKF 167 >UniRef50_D1B0G8 Putative uncharacterized protein n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B0G8_SULD5 Length = 142 Score = 131 bits (330), Expect = 9e-30, Method: Composition-based stats. Identities = 51/143 (35%), Positives = 80/143 (55%), Gaps = 5/143 (3%) Query: 9 TEMITAPVEALGFELVGIEFIRG-RTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDP 67 TE + +E+ G L E + RIYI S++GIN+D CA+VS +S + DVE P Sbjct: 4 TEQLIKIIESCGVSLYDTEVVSEFDKKIFRIYITSKEGINLDKCAEVSRILSPIFDVEPP 63 Query: 68 ITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITV 127 + Y EVSSPG++R L EH++ VGE+V + L+ N+ K+ G+++ + V Sbjct: 64 LEGEYLFEVSSPGIERKLLKPEHFSVSVGEKVKIKLK----NKEKFIGILEGFANNTLQV 119 Query: 128 TVEGKDEVFALSNIQKANLVPHF 150 VE + + AL +I+KA + Sbjct: 120 RVENEVKEIALDDIEKARTYFEW 142 >UniRef50_C9MWU5 UPF0090 protein n=2 Tax=Fusobacteriaceae RepID=C9MWU5_9FUSO Length = 162 Score = 130 bits (329), Expect = 1e-29, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 82/153 (53%), Gaps = 6/153 (3%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGIN-VDDCADVSHQV 58 M + + + I ++ + EL +E++R G + LR+Y++ DG +DDC D S ++ Sbjct: 1 MEQILNEFEKKIKQHLKEMNLELADLEYVRDGGYNYLRVYVEKLDGTTTLDDCIDFSREI 60 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 + D D I + LEVS+PG++R L + + RF+GE + + + ++ +K+ G ++ Sbjct: 61 DGIAD--DLIEEKFFLEVSTPGVERRLRKPKDFVRFLGERINVQAKSNIEGAKKFIGKLE 118 Query: 119 AVDGEMITVTVEG--KDEVFALSNIQKANLVPH 149 + + + + + K LS ++KANL+ Sbjct: 119 KFENDTVFLLDDKLEKIVEIPLSKLKKANLIYE 151 >UniRef50_A8F3W0 Ribosome maturation factor rimP n=1 Tax=Thermotoga lettingae TMO RepID=RIMP_THELT Length = 152 Score = 130 bits (329), Expect = 1e-29, Method: Composition-based stats. Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 7/152 (4%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTS-TLRIYIDSE-DGINVDDCADVSHQVS 59 + KL ++ + LG EL I R R LR+ ID + +++ C VS Q+ Sbjct: 5 KKIIDKLRPVVIDILSQLGLELFDITLRRERRKLVLRVVIDDPENYVSIRQCEIVSSQIG 64 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 LD D I +Y LEVSSPGLDRPL + Y RFVG + L+ + + G IK Sbjct: 65 NYLDEADLIDSSYILEVSSPGLDRPLREMKDYNRFVGRLAKIWLK----DGKVLVGNIKE 120 Query: 120 VDGEMITVTVE-GKDEVFALSNIQKANLVPHF 150 +++ ++ G+ F+ I+K L F Sbjct: 121 TTENTVSIELKNGEIITFSFDQIKKGKLEIDF 152 >UniRef50_B6W939 Putative uncharacterized protein n=1 Tax=Anaerococcus hydrogenalis DSM 7454 RepID=B6W939_9FIRM Length = 146 Score = 130 bits (328), Expect = 1e-29, Method: Composition-based stats. Identities = 48/149 (32%), Positives = 70/149 (46%), Gaps = 5/149 (3%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAV 61 L KL E + + + LG+ELV IEF+ G LR +I + GI +DDC S+ +S Sbjct: 2 DLISKLKENLESDINNLGYELVDIEFVTEGNNKILRFFIYKDGGITIDDCEKTSNLLSER 61 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 LD D I Y LEVSSP L RPL T R E + + L+ N K+ I+ + Sbjct: 62 LDEIDLIKSFYYLEVSSPDLSRPLKTDRDLERNKDELLEVKLK----NGEKFLANIEEIK 117 Query: 122 GEMITVTVEGKDEVFALSNIQKANLVPHF 150 + E + + + I+ + F Sbjct: 118 ENSLVFKCEDEQKEVDKNEIKTIKIEIVF 146 >UniRef50_A7HL08 Ribosome maturation factor rimP n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=RIMP_FERNB Length = 152 Score = 130 bits (328), Expect = 1e-29, Method: Composition-based stats. Identities = 46/152 (30%), Positives = 79/152 (51%), Gaps = 10/152 (6%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFI-RGRTSTLRIYIDS-EDGINVDDCADVSHQVS 59 + +++ + V ++G EL +++ + L I ID +D ++ DC VS+++ Sbjct: 6 KEIIERVRAIAEPIVTSMGLELFDVKYRIQAGKWVLSIIIDKLDDYVSTRDCELVSYEIE 65 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 VLD D I Y LEVSSPGLDRPL E + RFVG+ + V+ ++ ++G I Sbjct: 66 KVLDSHDFIPGRYYLEVSSPGLDRPLKKIEDFRRFVGKL------VKVKTKKTYRGYIVD 119 Query: 120 VDGEM--ITVTVEGKDEVFALSNIQKANLVPH 149 V+ E I + V+ ++ +++ ANL Sbjct: 120 VNMETKEIILRVDNENITIKYDDVKSANLEIE 151 >UniRef50_C7NAM7 Putative uncharacterized protein n=2 Tax=Fusobacteriaceae RepID=C7NAM7_LEPBD Length = 163 Score = 130 bits (327), Expect = 2e-29, Method: Composition-based stats. Identities = 45/154 (29%), Positives = 83/154 (53%), Gaps = 7/154 (4%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDG--INVDDCADVSHQ 57 M + + + I ++ + EL +E++R G + LR+Y++ EDG +DDC D S + Sbjct: 1 MEQILNEFEKRIELHLKEMKLELADLEYVRDGGYNYLRVYVEKEDGSTTTLDDCIDFSRE 60 Query: 58 VSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI 117 + V D D I + LEVS+PG++R L + + RF+GE++ + + + +K+ G + Sbjct: 61 IDGVAD--DLIDEKFFLEVSTPGVERRLKKPKDFLRFLGEKINVQAKSNIDGAKKFLGKL 118 Query: 118 KAVDGEMITVTVE--GKDEVFALSNIQKANLVPH 149 + + + I + E GK L ++KANL+ Sbjct: 119 EKFENDTIFLLDENLGKVVEIPLLKLKKANLIYE 152 >UniRef50_A7BD83 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BD83_9ACTO Length = 156 Score = 130 bits (327), Expect = 2e-29, Method: Composition-based stats. Identities = 50/153 (32%), Positives = 72/153 (47%), Gaps = 8/153 (5%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRG-RTSTLRIYIDSE---DGINVDDCADVSHQ 57 ST E L E++ V G EL + R LR+ +++ GI+ D ADVS Sbjct: 4 STSEGPLEELLAPVVAQSGLELDSVIRSRSDAMPLLRVIVEAPIGAGGIDSDTLADVSRA 63 Query: 58 VSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI 117 VS LDV DPI Y LEVS+PG +R L H+ R +G V + LR G + Sbjct: 64 VSKALDVADPIDGEYLLEVSTPGAERELTKVGHWMRQIGRLVRIKLRA----GGYVSGRV 119 Query: 118 KAVDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 A + T+ V+G+ + +++KA F Sbjct: 120 VAANETSATIDVDGETTIIDYQDMRKARSRVDF 152 >UniRef50_A1ZEG3 15 kDa protein n=3 Tax=Sphingobacteriales RepID=A1ZEG3_9SPHI Length = 152 Score = 129 bits (325), Expect = 3e-29, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 12/153 (7%) Query: 5 EQKLTEMITAPVEALGFELVGIEFIRGRTS-TLRIYIDSEDGINVDDCADVSHQVSAVLD 63 E+KLT +I +E + L+ + + L + ID + G+++D CA +S + ++ Sbjct: 4 EEKLTTLIKEHLEPE-YFLIDVILKNQKPKAKLTVLIDGDQGVSIDRCATLSRWLGKYIE 62 Query: 64 VEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGE 123 E+ I AY LEVSSPG+D PL Y + +G +V + L GV++ V+ + Sbjct: 63 EENLIEGAYTLEVSSPGVDLPLKNQRQYIKNIGRKVKVSLNEGGNK----TGVLEKVEDK 118 Query: 124 MITVTVEG------KDEVFALSNIQKANLVPHF 150 +I + E + E I K ++ F Sbjct: 119 LIVIQPEKKGKIIPEKEEIPFDQIMKTKVMISF 151 >UniRef50_C1B310 Ribosome maturation factor rimP n=3 Tax=Nocardiaceae RepID=RIMP_RHOOB Length = 190 Score = 128 bits (323), Expect = 5e-29, Method: Composition-based stats. Identities = 49/152 (32%), Positives = 83/152 (54%), Gaps = 11/152 (7%) Query: 5 EQKLTEMITAPVEALGFELVGIEFI-RGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLD 63 ++++TE+I+ V+ G+++ + G+ S +RI +DS+ G+ +D A++SH++S V D Sbjct: 6 KERVTELISDLVQRQGYDVEDVAVTLAGKHSAVRIMVDSDAGLELDAVANLSHEISEVFD 65 Query: 64 -VEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 V D Y LEV+SPG+DRPL H+ R G + + L G I A+DG Sbjct: 66 SVSDFGESPYTLEVTSPGIDRPLTHERHWRRARGRKARIDLA-----HETVVGRIGALDG 120 Query: 123 EMITVTVEGKD----EVFALSNIQKANLVPHF 150 + + V + + AL++IQKA + F Sbjct: 121 DSVAVVIGSRTGPDVRRIALADIQKAVVQVEF 152 >UniRef50_A0JUT7 Ribosome maturation factor rimP n=3 Tax=Arthrobacter RepID=RIMP_ARTS2 Length = 205 Score = 128 bits (323), Expect = 5e-29, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 70/163 (42%), Gaps = 21/163 (12%) Query: 5 EQKLTEMITAPVEALGFELVGIEF-IRGRTSTLRIYIDSE----DGINVDDCADVSHQVS 59 +++ ++ V+A L + + G + + +D G+++D A++S ++S Sbjct: 28 AERVRALLEPSVQAHRLYLEDVSIHVAGANRVVHVVVDLPQEETGGVSLDVIAEISKELS 87 Query: 60 AVLDVEDPITV-AYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 +LD + Y+LEVSSPG+ RPL H+ R G V + + G I+ Sbjct: 88 GILDGDPSYDSRPYDLEVSSPGVGRPLTEPRHWHRARGRMVKVNVIQ----GENLTGRIQ 143 Query: 119 AVDGEMITVTVE-----------GKDEVFALSNIQKANLVPHF 150 +VD + +T+ E G+ E I+ + F Sbjct: 144 SVDDDGVTLVPEIAAKKGMKPKQGEPEKIPFDRIRNGKVEIEF 186 >UniRef50_C1F695 Ribosome maturation factor rimP n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=RIMP_ACIC5 Length = 201 Score = 128 bits (323), Expect = 5e-29, Method: Composition-based stats. Identities = 50/200 (25%), Positives = 77/200 (38%), Gaps = 51/200 (25%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRG-RTSTLRIYIDSE---------------- 43 M+ + + G ++V +E+ G + LRI+I+ Sbjct: 1 MAFDLDTIRSAAQRVASSHGLDVVDVEYQGGAKHRMLRIFIEKNAEERAKLAAQSSGRVE 60 Query: 44 ------------------DGINVDDCADVSHQVSAVLDVEDPITVA--YNLEVSSPGLDR 83 G+ +DC+ S +LDVE+ + A Y LEVSSPGLDR Sbjct: 61 TIEVHEEMPREGMNPEHFSGVTHEDCSAFSTDFGTLLDVEELMPGASEYTLEVSSPGLDR 120 Query: 84 PLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTV-------------- 129 L + Y RF G V L V R WQG + +DG+ + + + Sbjct: 121 KLQSRADYERFAGSLVKLSTFEPVNGNRHWQGRMAGLDGDTLRLDLTAMKQKGKGKEKKS 180 Query: 130 EGKDEVFALSNIQKANLVPH 149 + AL N++KA L+P Sbjct: 181 AAETVEIALGNVEKAQLIPE 200 >UniRef50_B0S1E8 Ribosome maturation factor rimP n=2 Tax=Finegoldia magna RepID=RIMP_FINM2 Length = 154 Score = 128 bits (323), Expect = 5e-29, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 75/147 (51%), Gaps = 2/147 (1%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRG-RTSTLRIYIDSEDG-INVDDCADVSHQVS 59 L + ++ ++ G E +E+ + L YI+ +DG I++DDC +++++S Sbjct: 4 KYLRDLMNNDLSPLIKDTGIEFYDVEYSNNNGKNILTFYIEKDDGLISIDDCELINNKIS 63 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 LD DPI+ Y LE++S + P + + + +G V + L + ++++++G++ Sbjct: 64 DKLDEIDPISDPYYLEIASVDITTPFTRDKDFKKNLGNVVIVNLYQKLDSKKEFKGILTD 123 Query: 120 VDGEMITVTVEGKDEVFALSNIQKANL 146 + I++ +E K+ SNI L Sbjct: 124 FNDTEISLELEKKEIKIERSNISSIKL 150 >UniRef50_D1VB72 Putative uncharacterized protein n=1 Tax=Frankia sp. EuI1c RepID=D1VB72_9ACTO Length = 277 Score = 128 bits (323), Expect = 5e-29, Method: Composition-based stats. Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 18/158 (11%) Query: 7 KLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVE 65 ++ + + + GF+L + R G S LR+ +D +DGI++D AD S +S +LD Sbjct: 23 EIRDRLAEALARAGFDLDDLSLSRAGSRSVLRVAVDRDDGIDLDAVADASRLISDLLDQV 82 Query: 66 DP--ITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGE 123 D + AY LEV+SPG+DRPL H+ R G V + G + D E Sbjct: 83 DEGGLAGAYVLEVTSPGVDRPLTEPRHWRRARGRLVEAR----RVDGTVVLGRVLGADDE 138 Query: 124 MITVT-----------VEGKDEVFALSNIQKANLVPHF 150 + + V+ K E +++ +A + F Sbjct: 139 GVDLAVAAGPVRRGRPVKTKIERLRFADVARAVVQIEF 176 >UniRef50_Q0AYJ1 Ribosome maturation factor rimP n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=RIMP_SYNWW Length = 139 Score = 128 bits (322), Expect = 6e-29, Method: Composition-based stats. Identities = 40/128 (31%), Positives = 63/128 (49%), Gaps = 3/128 (2%) Query: 24 VGIEFIRGRT-STLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGLD 82 V IE+ + LR++ID ++G+++D C+ + + D ++ I Y LEVSSPGLD Sbjct: 14 VNIEYRKENKEQFLRVFIDKDNGVDLDMCSQANRAIKESFDEQE-IPYDY-LEVSSPGLD 71 Query: 83 RPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTVEGKDEVFALSNIQ 142 R L + RF G V + R + ++ G++ D E I V +EG+ I Sbjct: 72 RVLKKERDWERFSGYRVRIKTRKSFPGPQRITGILLGFDSENIAVELEGELLKVPREMIT 131 Query: 143 KANLVPHF 150 L P F Sbjct: 132 IIRLHPEF 139 >UniRef50_A0RQZ2 Ribosome maturation factor rimP n=2 Tax=Epsilonproteobacteria RepID=RIMP_CAMFF Length = 140 Score = 128 bits (322), Expect = 6e-29, Method: Composition-based stats. Identities = 38/141 (26%), Positives = 71/141 (50%), Gaps = 6/141 (4%) Query: 12 ITAPVEALGFELVGIEFIRGRTSTL-RIYIDSEDGINVDDCADVSHQVSAVLDVEDPITV 70 ++ V G +L E + + R+YI G+++++C VS +S + DV P++ Sbjct: 4 LSNLVSQCGVDLYDAEVVNENGRVIYRVYITKNGGVSLEECEAVSKLLSPIYDVMPPVSG 63 Query: 71 AYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTVE 130 + LEVSSPGL+R L EH+ +GE ++L ++ + +G I +V + I + ++ Sbjct: 64 EWILEVSSPGLERKLSKIEHFTLSIGEFAKIIL----NDKTEIKGKIVSVKDDNICINIK 119 Query: 131 -GKDEVFALSNIQKANLVPHF 150 + NI+KA + Sbjct: 120 NNESIEVKFENIKKAKTYMEW 140 >UniRef50_Q2NC14 Ribosome maturation factor rimP n=2 Tax=Erythrobacter RepID=RIMP_ERYLH Length = 188 Score = 128 bits (322), Expect = 7e-29, Method: Composition-based stats. Identities = 52/159 (32%), Positives = 83/159 (52%), Gaps = 13/159 (8%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRG----RTSTLRIYIDSE--DGINVDDCADV 54 M+ L +LT +I +ALGFELV ++ + L+I + + ++ CA++ Sbjct: 1 MADLA-RLTALIEPEAKALGFELVRVKMMPSEAGDGGQALQIMAEDPATGQLLIEQCAEL 59 Query: 55 SHQVSAVLDVED-----PITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQN 109 S +VS V+D + I AY+LEVSSPG+DRPL + +A + G E + L + Sbjct: 60 SRKVSDVIDAAEESGEVLIEGAYHLEVSSPGIDRPLTRPKDFADWAGHEAKVSLVEKIDG 119 Query: 110 RRKWQGVIKAVDGEMITVTVE-GKDEVFALSNIQKANLV 147 R +G++ +DGE +T+ + FAL I A LV Sbjct: 120 HRNMRGILLGIDGETVTIADNRAGEVSFALEQIHSAKLV 158 >UniRef50_C5RBB8 Putative uncharacterized protein n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RBB8_WEIPA Length = 235 Score = 127 bits (321), Expect = 8e-29, Method: Composition-based stats. Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 8/156 (5%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGRTS-TLRIYIDSEDG-INVDDCADVSHQV 58 M+ + + + ++ + GF+L + + + + LR+ +D DG IN+DD ++ + Sbjct: 8 MAKVTENVQAILKPILAKKGFDLWDVLYEKQDSDFVLRVLVDRVDGEINMDDLVMLTEVI 67 Query: 59 SAVLDVE--DPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGV 116 S LD+ DP AY L+VSSPG DR L ++ VG+ + ++L V K+ G Sbjct: 68 SDELDMITPDPFPQAYLLDVSSPGADRELQQPGNFVWAVGKFIEVILNNPVAGLEKFTGQ 127 Query: 117 IKAVDGEMITVTVEGKD----EVFALSNIQKANLVP 148 + + + +T+ V K L NIQKANL Sbjct: 128 LVSFLDDKLTIDVALKTKHQLIEIDLDNIQKANLSV 163 Score = 48.8 bits (116), Expect = 5e-05, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 1/70 (1%) Query: 82 DRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTVE-GKDEVFALSN 140 DR L T E Y + V + + R+++ G + E + +T E + + Sbjct: 166 DRILTTEEDYEWARHKLVHISTYQKINGRKEFLGELNNFTPEDLIITDESNDELLIPRRA 225 Query: 141 IQKANLVPHF 150 + +A F Sbjct: 226 VAQARQSNDF 235 >UniRef50_C1TMK4 Uncharacterized conserved protein n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TMK4_9BACT Length = 181 Score = 127 bits (321), Expect = 8e-29, Method: Composition-based stats. Identities = 53/143 (37%), Positives = 79/143 (55%), Gaps = 3/143 (2%) Query: 9 TEMITAPVEALGFELVGIEFIRG-RTSTLRIYIDSEDGINVDDCADVSHQVSAVLDV--E 65 E I VE+LG+E +G+E + S +R+Y+DS GI+V DC VS +++ L+ E Sbjct: 8 KEEIREIVESLGYEFIGLEVKKESAASFVRVYMDSLGGISVRDCEIVSRRINNWLEESGE 67 Query: 66 DPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMI 125 D + Y LEVSSPGL+RPLF+ + + RF G+E ++ L V+ RR+ G++ I Sbjct: 68 DLLDDRYYLEVSSPGLERPLFSLDDFRRFSGKEASIRLNELVEGRRRINGIVSVSQDGSI 127 Query: 126 TVTVEGKDEVFALSNIQKANLVP 148 V + F L I A L Sbjct: 128 RVENQDGAFEFPLEMILSAKLKY 150 >UniRef50_A4FM36 Ribosome maturation factor rimP n=4 Tax=Actinomycetales RepID=RIMP_SACEN Length = 185 Score = 127 bits (321), Expect = 9e-29, Method: Composition-based stats. Identities = 41/150 (27%), Positives = 77/150 (51%), Gaps = 6/150 (4%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAV 61 + +L ++ V A GF+L ++ + GR +++ +D+E+G+ +D+ +++S VS V Sbjct: 8 EVAARLEPVVAEAVSAAGFDLEELDVQQAGRRRLVKVVVDAEEGVGLDEISEISRAVSKV 67 Query: 62 LDV-EDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 LD E + +Y LEV+SPG+DRPL H+ R V + L + + Sbjct: 68 LDAHEHVLAGSYTLEVTSPGVDRPLTRPRHWRRARYRLVRVRL----ADGSDLVVRVGEA 123 Query: 121 DGEMITVTVEGKDEVFALSNIQKANLVPHF 150 D E + V +G+ A ++++A + F Sbjct: 124 DDEGVVVLADGEIRTLAYRDVERAVVEVEF 153 >UniRef50_B6BVK2 Putative uncharacterized protein n=1 Tax=beta proteobacterium KB13 RepID=B6BVK2_9PROT Length = 158 Score = 127 bits (320), Expect = 1e-28, Method: Composition-based stats. Identities = 50/143 (34%), Positives = 80/143 (55%), Gaps = 3/143 (2%) Query: 8 LTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDP 67 L ++I+ ++ +G+ELV E + +RI+ID+ + I+VDDC VS+ ++ VL VE Sbjct: 17 LEKIISESIQNIGYELVECE-HNHNSGLIRIFIDNGNLISVDDCVKVSNHLNRVLSVELD 75 Query: 68 ITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITV 127 + LEVSSPG+DR L Y RF GE++ + L + N++K+ G + A D + I + Sbjct: 76 YDFS-RLEVSSPGVDRKLIKLADYKRFEGEKIKIKLYSPINNQKKFDGKLIASDEKKIKI 134 Query: 128 TV-EGKDEVFALSNIQKANLVPH 149 + + K IQ A L P Sbjct: 135 LLSDEKILEVPFDEIQMARLNPD 157 >UniRef50_A4E6V0 Putative uncharacterized protein n=3 Tax=Collinsella RepID=A4E6V0_9ACTN Length = 170 Score = 127 bits (320), Expect = 1e-28, Method: Composition-based stats. Identities = 44/151 (29%), Positives = 79/151 (52%), Gaps = 5/151 (3%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRG-RTSTLRIYIDSEDG--INVDDCADVSHQV 58 + EQ + + + A ++V +E + + +R+ I+ +G ++++D + V Sbjct: 10 TKTEQAIIDALEAVAPQHDIDIVDVELVGATKAPCVRVRIEGAEGQSLSLNDVTANTKWV 69 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 V++ DPI+ +Y LEVSSPG+ RPL +ARFVGE L A + RRK+ G I Sbjct: 70 GDVIEELDPISSSYTLEVSSPGMARPLRRPSDFARFVGENCEL-TSTATEGRRKYAGKIA 128 Query: 119 AVDGEMITVTV-EGKDEVFALSNIQKANLVP 148 + +T+ + +G+ S+++K L P Sbjct: 129 SATETSVTLELEDGESVTLDFSDVKKCKLKP 159 >UniRef50_A6T0Z0 Ribosome maturation factor rimP n=7 Tax=Betaproteobacteria RepID=RIMP_JANMA Length = 161 Score = 125 bits (315), Expect = 4e-28, Method: Composition-based stats. Identities = 57/156 (36%), Positives = 84/156 (53%), Gaps = 17/156 (10%) Query: 7 KLTEMITAPVEALGFELVGIEFIRGRTSTLRIYID------SEDGINVDDCADVSHQVSA 60 +L+ +I V +G+ELV E + +R++ID + I V+DC V+HQ+ Sbjct: 2 QLSALIEKTVVGMGYELVNFE--QAARGLVRVFIDFTPEDADKGAITVEDCEKVTHQLLH 59 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAV---QNRRKWQGVI 117 VL VE+ LEVSSPGLDRPL Y RF G E + LRM + NR+ +QG++ Sbjct: 60 VLTVENANYE--RLEVSSPGLDRPLKKLSDYVRFAGAEALVKLRMPMPNAANRKSFQGIL 117 Query: 118 KAVDGEMITVTVEGK----DEVFALSNIQKANLVPH 149 + GE + + EG F L+++ KA+LVP Sbjct: 118 QEPVGETLALEFEGNDGPAKLEFTLADVDKAHLVPQ 153 >UniRef50_Q2S1N5 Ribosome maturation factor rimP n=1 Tax=Salinibacter ruber DSM 13855 RepID=RIMP_SALRD Length = 155 Score = 125 bits (314), Expect = 5e-28, Method: Composition-based stats. Identities = 37/151 (24%), Positives = 70/151 (46%), Gaps = 3/151 (1%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRT-STLRIYIDSEDGINVDDCADVSHQVSA 60 L +++ + + + LV +E + + +YIDSE+ + DD A +S ++ Sbjct: 6 QHLADRVSGLTEEVIVGTDYFLVDVEVRGHKGTRVVEVYIDSEEEVGHDDLALISKEIGF 65 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 +LDVED + +Y LE+SSPG+ RPL Y + VG + + + + G + Sbjct: 66 LLDVEDVVDGSYKLELSSPGIKRPLTMPAQYRKNVGRTLRVRF-ESDGDEEIVVGDLTDA 124 Query: 121 DGEMITVTVE-GKDEVFALSNIQKANLVPHF 150 D E I + + + + I +A + + Sbjct: 125 DDEEIELELPSAERLQLPYTTITQARIELPW 155 >UniRef50_Q2JX22 Ribosome maturation factor rimP n=30 Tax=Cyanobacteria RepID=RIMP_SYNJA Length = 157 Score = 124 bits (312), Expect = 9e-28, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 66/147 (44%), Gaps = 4/147 (2%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIRGR-TSTLRIYI---DSEDGINVDDCADVSHQVS 59 L +L + LG+ELV + F + LR+ I D E + DC +S + Sbjct: 5 LIPQLESLARPLAARLGYELVQMVFHTNQYPPVLRVDIRPLDPEQETSHADCEAMSQALE 64 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 LD D I Y LEVSSPG+ L + + F G V + + + + W G + Sbjct: 65 VELDRVDLIPGHYVLEVSSPGISNLLISDRDFVVFKGFAVEVTVDPPYKGKAVWSGHLLG 124 Query: 120 VDGEMITVTVEGKDEVFALSNIQKANL 146 D E + ++++G+ +++Q+ L Sbjct: 125 RDEEKVALSLKGRRVQLPRASVQRVVL 151 >UniRef50_Q1J5B0 Ribosome maturation factor rimP n=71 Tax=Streptococcaceae RepID=RIMP_STRPF Length = 178 Score = 124 bits (312), Expect = 9e-28, Method: Composition-based stats. Identities = 49/156 (31%), Positives = 82/156 (52%), Gaps = 8/156 (5%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVS 59 ++++ +T+ +T ++A +ELV +E+ + G L I +D E GI V+D +D+++ +S Sbjct: 23 ITSIIDIVTKTVTPEIKA-PYELVDVEYDKMGSDYILSILVDKEGGITVEDTSDLTNIIS 81 Query: 60 AVLDVEDP--ITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI 117 +LD DP Y LEVSSPGL+RPL TA+ VG + + L A+ + +QG + Sbjct: 82 PLLDTIDPDPFPNQYMLEVSSPGLERPLKTADSLKAAVGSYINVSLYQAIDKVKVFQGDL 141 Query: 118 KAVDGEMITVTVEGKD----EVFALSNIQKANLVPH 149 A DGE +T+ K + K + Sbjct: 142 LAFDGETLTIDYLDKTRHKIVNIPYQAVAKVRMAVK 177 >UniRef50_Q8DHL1 Ribosome maturation factor rimP n=1 Tax=Thermosynechococcus elongatus BP-1 RepID=RIMP_THEEB Length = 157 Score = 123 bits (310), Expect = 1e-27, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 2/142 (1%) Query: 8 LTEMITAPVEALGFELVGIEF-IRGRTSTLRIYIDSE-DGINVDDCADVSHQVSAVLDVE 65 + + + +LV +++ LR+ + + +++DC +S + LD Sbjct: 10 VQTLAQQVADQEHLDLVSVQWLTHQSPPILRVEVRHPENDTSLEDCERLSRALEMALDEL 69 Query: 66 DPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMI 125 AY LEVSSPGL L + + F G V + + + W+G + D + Sbjct: 70 PEFEFAYVLEVSSPGLSDYLSSDRDFDAFRGFPVRVTTTAPHRGKTLWEGNLIRRDEVNV 129 Query: 126 TVTVEGKDEVFALSNIQKANLV 147 + G+ S I L Sbjct: 130 YLNQRGRSLAIPRSLIASVQLY 151 >UniRef50_D0GIT1 Putative uncharacterized protein n=1 Tax=Leptotrichia goodfellowii F0264 RepID=D0GIT1_9FUSO Length = 178 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 87/153 (56%), Gaps = 6/153 (3%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGIN-VDDCADVSHQV 58 + + K + I +++L EL +E+I+ G + LR+Y++ +DG +DDC ++S ++ Sbjct: 17 LEEILSKFEKEIQDSLDSLDLELSDLEYIQEGGYNYLRVYVEKKDGTTSLDDCIELSSKI 76 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 + D + I + LEVS+PG++R L + + RF GE++ L + ++ ++ ++G ++ Sbjct: 77 DGLAD--NLINEKFYLEVSTPGVERKLKKEKDFIRFSGEKIKLHSKSQIEGKKTFEGKLE 134 Query: 119 AVDGEMITVTVE--GKDEVFALSNIQKANLVPH 149 + + I + + GK LS ++KANL+ Sbjct: 135 KFENDTIFLNDQNIGKTVEIPLSKLKKANLIYE 167 >UniRef50_C0ZYA2 Ribosome maturation factor rimP n=2 Tax=Rhodococcus erythropolis RepID=RIMP_RHOE4 Length = 206 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 45/152 (29%), Positives = 77/152 (50%), Gaps = 11/152 (7%) Query: 5 EQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLD 63 +++ E+I+ V A G+++ + G+ S +RI +DS+ GI +D A++S VS + D Sbjct: 6 RERVIELISELVHAQGYDVEDVVVTSAGKHSAVRIMVDSDAGIELDAAAEISRLVSELFD 65 Query: 64 VEDPITV-AYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 + I Y LEV+SPG+DRPL H+ R G + + L G I ++ Sbjct: 66 SLEEIGETPYTLEVTSPGIDRPLTLERHWRRARGRKARIDLA-----GETVVGRIGTLND 120 Query: 123 EMITVTVEGKD----EVFALSNIQKANLVPHF 150 + + V + G+ AL ++QKA + F Sbjct: 121 DSVAVVIGGRGGLTVREIALGDVQKAVVQVEF 152 >UniRef50_C6XFV9 Putative uncharacterized protein n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XFV9_LIBAP Length = 192 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 74/154 (48%), Gaps = 9/154 (5%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSAVL 62 L ++ +I +E + F V I + + L+I+++ +DG + + DC ++S +S +L Sbjct: 21 LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80 Query: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 DVE+ I Y LEVSSPG+DRP+ + R+ G V + ++ +++K G I Sbjct: 81 DVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSE 140 Query: 123 EMITVTVEGK--------DEVFALSNIQKANLVP 148 + E + + ++ A L+ Sbjct: 141 TGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 >UniRef50_B7CAI1 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAI1_9FIRM Length = 173 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 6/150 (4%) Query: 6 QKLTEMITAPVEALGFELVGIEFIRGRT-STLRIYIDSEDG-INVDDCADVSHQVSAVLD 63 L E I + G L +E+I + LR+ ++ EDG +++D CA S + +LD Sbjct: 23 DNLKEWIEEVLNENGCHLYDLEWITNQGTPLLRVSVEKEDGTMDLDTCASCSDVIGQMLD 82 Query: 64 VEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGE 123 +D + Y LEV SPG +R L T E R VG+ V + ++ Q + G + Sbjct: 83 EKDWYSHEYMLEVCSPGAERELRTDEEVQRAVGKYVFVKMKDPKQGLDQVIGDLVEATEN 142 Query: 124 MITVTVEGKD----EVFALSNIQKANLVPH 149 +T++ K SNIQ Sbjct: 143 DVTISYRDKTRTKKITIEKSNIQLIMTAVK 172 >UniRef50_A0LV30 Ribosome maturation factor rimP n=1 Tax=Acidothermus cellulolyticus 11B RepID=RIMP_ACIC1 Length = 170 Score = 122 bits (308), Expect = 3e-27, Method: Composition-based stats. Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 22/167 (13%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTST-LRIYIDSEDGINVDDCADVSHQVSA 60 ST Q+L E++ V G +L G+ + RTS LRI +D + G+ +D+ A S +S Sbjct: 4 STGAQRLAELLAPVVAGQGLDLEGVTLLDHRTSAHLRIVVDKDGGVQLDEIAAASQAISH 63 Query: 61 VLD---VEDPITVA--YNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQG 115 LD D I Y LEVSSPG+DRPL H+ R +G V + L Sbjct: 64 FLDNDAEADAIIGPRSYTLEVSSPGIDRPLVEPRHWRRAIGRLVRVQLPDLGP----VVA 119 Query: 116 VIKAVDGEMITVTVE------------GKDEVFALSNIQKANLVPHF 150 ++ V G+ + + +E ++ A++ ++ + F Sbjct: 120 RVQDVTGDQVRLGIEWQYTDDGACVRQYEERTVAIAEVRPGQIEVEF 166 >UniRef50_A9BH33 Ribosome maturation factor rimP n=1 Tax=Petrotoga mobilis SJ95 RepID=RIMP_PETMO Length = 157 Score = 122 bits (307), Expect = 3e-27, Method: Composition-based stats. Identities = 45/152 (29%), Positives = 63/152 (41%), Gaps = 4/152 (2%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDG-INVDDCADVSHQVS 59 ++Q + E LG E+ I + L + ID DG +++ DC S Sbjct: 5 KEIKQLIWEKADNVASKLGLEIFDILIKGSNKNKILEVVIDKADGYVSIGDCERFSKAFD 64 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 LD D +Y L VSSPGLDR L Y RF G+ +L+ G I Sbjct: 65 PWLDEIDLFDKSYELVVSSPGLDRKLRGKADYERFKGKLAKFILKGKETKHPVVIGYIDE 124 Query: 120 VDGEMITVTVE--GKDEVFALSNIQKANLVPH 149 + + I +T + GK L+ I KANL Sbjct: 125 ILEDQIKITEKDSGKLFNIDLNEIDKANLEIE 156 >UniRef50_Q6A7M3 Ribosome maturation factor rimP n=2 Tax=Propionibacterium acnes RepID=RIMP_PROAC Length = 178 Score = 122 bits (307), Expect = 4e-27, Method: Composition-based stats. Identities = 41/163 (25%), Positives = 74/163 (45%), Gaps = 18/163 (11%) Query: 5 EQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSED----GINVDDCADVSHQVS 59 ++LT ++ V +G EL ++ + GR +R+ ID + G ++D+ ++ + ++S Sbjct: 3 AERLTRLLEPVVSQVGLELDRVDVVPAGRRRLVRVTIDGDGPDGHGPSLDEISEATAEIS 62 Query: 60 AVLDVEDPITV-AYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQ--NRRKWQGV 116 LD + Y LEVSS G+ PL HY R +G V L A + + + G Sbjct: 63 HCLDDSGAMGESPYTLEVSSRGVSTPLTQPRHYRRNIGHLVRFTLNPAEEQKSGETFDGR 122 Query: 117 IKAVDGEMITVTVEGK----------DEVFALSNIQKANLVPH 149 I E++T+ VE + L+++ KA + Sbjct: 123 IAEAGEEVVTLEVEAENSKPHKPVYTTREVQLADVAKAVVQVE 165 >UniRef50_A8R7M6 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8R7M6_9FIRM Length = 181 Score = 122 bits (306), Expect = 5e-27, Method: Composition-based stats. Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 7/150 (4%) Query: 6 QKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLD 63 +K+ ++++ + L + + + G+ L+I I +DG +++D CA+VS ++SA LD Sbjct: 32 EKIKQLVSDVLGDE-LVLYDVAWHQEGKNKILQIAIMRKDGTMDIDTCAEVSEKISAKLD 90 Query: 64 VEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGE 123 ED I Y LEV SPG +R L T E +GE V + L+ +G + + + Sbjct: 91 EEDFIQSEYFLEVCSPGAERELKTYEQIKDAIGEFVYVKLKDPKAGMCDVKGTLLSCEEN 150 Query: 124 MITVTVEGKDE----VFALSNIQKANLVPH 149 I + K ++NI L Sbjct: 151 SILIQYMDKAVKKKAEIEIANIALIRLSVK 180 >UniRef50_A5CEN4 Ribosome maturation factor rimP n=2 Tax=Orientia tsutsugamushi RepID=RIMP_ORITB Length = 160 Score = 122 bits (306), Expect = 5e-27, Method: Composition-based stats. Identities = 51/148 (34%), Positives = 81/148 (54%), Gaps = 4/148 (2%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDS--EDGINVDDCADVSHQVSAV 61 L K+ E+IT + LG++++ + FI + + L+I ID E +NV DC S +SAV Sbjct: 2 LNDKIKELITPTAKTLGYKVINVSFIV-KPAILKIVIDRFDEKKVNVLDCQVFSKAISAV 60 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 LDVE+ I Y LEV S G++R L E + +F+G + + L A+ +K+ GVI + Sbjct: 61 LDVENIIPGKYFLEVESAGIERSLMDLEDFIKFLGYTIQVKLVAAINENKKYIGVISNIK 120 Query: 122 GEMITVTV-EGKDEVFALSNIQKANLVP 148 G+ IT+ + NI+ A +V Sbjct: 121 GQEITLNLQNDSTIAIDYDNIKVAKIVF 148 >UniRef50_C9Z253 Putative uncharacterized protein n=4 Tax=Streptomyces RepID=C9Z253_STRSW Length = 169 Score = 121 bits (305), Expect = 6e-27, Method: Composition-based stats. Identities = 51/159 (32%), Positives = 74/159 (46%), Gaps = 13/159 (8%) Query: 1 MSTLE-QKLTEMITAPVEALGFELVGIEF-IRGRTSTLRIYIDSEDGINVDDCADVSHQV 58 MST + ++L E++ V + G +L I GR LR+ +DS++G ++D ADVS + Sbjct: 1 MSTTQSERLRELLEPLVRSQGLDLEEIAVDSVGRKRVLRVVVDSDEGADLDAVADVSRAL 60 Query: 59 SAVLDVEDPITVA-YNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI 117 SA LD D + + Y LEV +PG +R L HY R V V LR + I Sbjct: 61 SAKLDETDAMGQSEYTLEVGTPGAERALTEHRHYRRAVDRLVKFTLREDGE----LIARI 116 Query: 118 KAVDGEMITVTVEGKD------EVFALSNIQKANLVPHF 150 VD E + + V G A I +A + F Sbjct: 117 LTVDDEGLDLEVPGVKGRRATSRRLAFDEIDRARVQVEF 155 >UniRef50_B9Y7V3 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y7V3_9FIRM Length = 156 Score = 121 bits (305), Expect = 6e-27, Method: Composition-based stats. Identities = 39/151 (25%), Positives = 75/151 (49%), Gaps = 7/151 (4%) Query: 6 QKLTEMITAPVEALGFELVGIEFIRGRT-STLRIYIDSEDG-INVDDCADVSHQVSAVLD 63 + + +I +++LG +L ++++ + L+I + DG +++D CA VS ++S LD Sbjct: 5 ENIKTLILPVLDSLGIQLYDLKWVNEKKSRILQIAVMRADGSMDIDTCALVSEKISEALD 64 Query: 64 V-EDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 +D I+ Y LEV SPG +R L A +G+ V + L+ V++ + G + ++ Sbjct: 65 AHDDWISFEYFLEVCSPGAERELRNAGEIRGALGKHVCVRLKSPVKSMMEITGDLLEMNE 124 Query: 123 EMITVTVEGKDEV----FALSNIQKANLVPH 149 +T++ K L I+K L Sbjct: 125 TTLTLSYRDKAVTRKAQVELDQIEKIRLAVK 155 >UniRef50_C7QDY6 Putative uncharacterized protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QDY6_CATAD Length = 203 Score = 121 bits (305), Expect = 6e-27, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 68/157 (43%), Gaps = 15/157 (9%) Query: 5 EQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYI-DSEDGINVDDCADVSHQVSAVLD 63 +L ++ V A G++L + + + D +DG+++D +D++ VS VLD Sbjct: 10 ADRLQALLEPVVAAAGYDLESVRVSQVARRRRVEVVVDGDDGVSLDAVSDITRVVSDVLD 69 Query: 64 VEDPI----TVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 + + Y LEV SPG DRPL +H+ R G V +LR G + Sbjct: 70 APEGVAVMGEQPYVLEVGSPGTDRPLTLPKHWRRAKGRLVRALLRNGGD----VTGRVLD 125 Query: 120 VDGEMITVTVEG------KDEVFALSNIQKANLVPHF 150 D E + + V G ++ S + KA + F Sbjct: 126 SDDEGVLLEVPGKKKGQTEERRLEYSEVAKARVEIEF 162 >UniRef50_C7R3D7 Putative uncharacterized protein n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R3D7_JONDD Length = 177 Score = 121 bits (305), Expect = 6e-27, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 66/148 (44%), Gaps = 12/148 (8%) Query: 7 KLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSE----DGINVDDCADVSHQVSAV 61 ++ + + V G L +E++ G T+T+R+ +D + ++ + VS +S Sbjct: 9 QVHDAVAPIVHDAGLFLEDLEYLGSGPTTTIRVTVDLPEDVSGPVGLETISSVSRDLSTA 68 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 LD + Y LEVSSPG RPL H+ R VG +++ N ++ + V Sbjct: 69 LDSVSVLHSQYTLEVSSPGTSRPLTQPRHFRRNVGRLISVKTV----NGERFTERLVEVT 124 Query: 122 GEMITVTVEGKDEVFALSNIQKANLVPH 149 + + AL++I++A + Sbjct: 125 DDAVLFDT---RRHVALADIRRAKVEVE 149 >UniRef50_Q9ZM44 Ribosome maturation factor rimP n=14 Tax=Helicobacter RepID=RIMP_HELPJ Length = 146 Score = 121 bits (305), Expect = 7e-27, Method: Composition-based stats. Identities = 42/150 (28%), Positives = 77/150 (51%), Gaps = 7/150 (4%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIRGR-TSTLRIYIDSEDG-INVDDCADVSHQVSAV 61 + +K+ E I +E+LG+ L + ++ LR+ + + +G +++D C VS +S + Sbjct: 1 MTKKIEEKIEGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL 60 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 LDV D I AY LEVSS GL+R L T +H+ +GE+V + L N+ +Q V+K + Sbjct: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLI----NKESFQAVLKDAN 116 Query: 122 GEMITVTVEGKDEV-FALSNIQKANLVPHF 150 ++ +++K + + Sbjct: 117 DLSADFELDNHAIKSVEYKDLKKVKTLFEW 146 >UniRef50_P59821 Ribosome maturation factor rimP n=2 Tax=Helicobacter RepID=RIMP_HELHP Length = 157 Score = 121 bits (304), Expect = 9e-27, Method: Composition-based stats. Identities = 44/159 (27%), Positives = 76/159 (47%), Gaps = 17/159 (10%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIRG-RTSTLRIYIDSEDG-----------INVDDC 51 L Q I LG + I+F + LR+ I + +++ DC Sbjct: 2 LSQHTQARIEQLAATLGLYIYDIDFFKEDNRPILRVSITRKAPMQKQDCKNGLAVSLQDC 61 Query: 52 ADVSHQVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRR 111 +VS +S +LDVED YNLEVSSPGL+R L +HY +GE+V++ L ++ Sbjct: 62 QNVSELISPLLDVEDENLKDYNLEVSSPGLERVLKKPQHYIYSLGEKVSIKL----MDKS 117 Query: 112 KWQGVIKAVDGE-MITVTVEGKDEVFALSNIQKANLVPH 149 +G++ V+ I++ + F+ ++++K +V Sbjct: 118 VIEGILHDVNENVSISIDTGKEILSFSFADMKKIKVVFE 156 >UniRef50_C6VUJ7 Putative uncharacterized protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VUJ7_DYAFD Length = 160 Score = 120 bits (303), Expect = 1e-26, Method: Composition-based stats. Identities = 42/162 (25%), Positives = 71/162 (43%), Gaps = 18/162 (11%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIRGR-TSTLRIYIDSEDGINVDDCADVSHQVSAV 61 T+++ L ++ +E LV I + + + I +DS++GI + C +S +++ Sbjct: 2 TVKEHLEVLLAPLLEDGDCFLVDIAIKPSKLSQKVTILVDSDEGITIQQCTSISRRLAKQ 61 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 L+ + T AY LEVSSPGLD+PL Y + VG + + L+ QG + Sbjct: 62 LEELEVFTQAYTLEVSSPGLDQPLLLPRQYKKNVGRNLKITLKS----GEILQGTLTDAG 117 Query: 122 GEMITVTVEGKD-------------EVFALSNIQKANLVPHF 150 IT+ + AL +I KA + F Sbjct: 118 DSDITIQLPAPKKKPKTPVDEASLVRTIALDDISKALIEISF 159 >UniRef50_D0WR24 Putative uncharacterized protein n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WR24_9ACTO Length = 160 Score = 120 bits (303), Expect = 1e-26, Method: Composition-based stats. Identities = 34/150 (22%), Positives = 67/150 (44%), Gaps = 8/150 (5%) Query: 4 LEQKLTEMITAPVEALGFELVGIEF-IRGRTSTLRIYID---SEDGINVDDCADVSHQVS 59 + + ++ + V + G L ++ G+ +++ +D G++ D +VS +S Sbjct: 1 MTESISTALDEVVASRGLYLEAVKIGRGGKNLVVKVVVDLPSGPGGVDSDRLTEVSRDIS 60 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 LD D + AY LEVS+PG +R L H++R G V L + + G + + Sbjct: 61 QRLDDVDLVQGAYTLEVSTPGAERSLREPRHFSRAQGRLVELRTV----DGKSVVGRLVS 116 Query: 120 VDGEMITVTVEGKDEVFALSNIQKANLVPH 149 + G+ + V VEG ++ + + Sbjct: 117 LSGDALNVQVEGSRRSVPMAEVVSGRVKID 146 >UniRef50_A6GK80 Putative uncharacterized protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GK80_9DELT Length = 174 Score = 119 bits (300), Expect = 2e-26, Method: Composition-based stats. Identities = 45/173 (26%), Positives = 69/173 (39%), Gaps = 31/173 (17%) Query: 8 LTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDV-- 64 + I +G+E + IE+ G+ LR+++DS G+ + DC + + LD Sbjct: 1 MEAAIEPVCADMGYEALLIEWSGSGQRRVLRVFLDSPKGVTIADCTRMGRLIGNSLDAAE 60 Query: 65 ------------EDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVL----RMAVQ 108 + Y LEVSSPG+DRPL H+ VG V L A Sbjct: 61 AAVEAGEGNPALAALLAPGYTLEVSSPGVDRPLAKKRHFTAQVGGRVKLKTWESPAAADA 120 Query: 109 NRRKWQGVIKAVDGE----------MITVTVEGKDEV--FALSNIQKANLVPH 149 + R + G + AV + + V +D L I++ANLV Sbjct: 121 DERSFNGRLVAVHDDDAAPEDQRRGTVVVHDPERDRTIPIPLPLIRRANLVWE 173 >UniRef50_C3XJ54 Putative uncharacterized protein n=1 Tax=Helicobacter bilis ATCC 43879 RepID=C3XJ54_9HELI Length = 167 Score = 119 bits (300), Expect = 2e-26, Method: Composition-based stats. Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 22/165 (13%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIRGRTS-TLRIYIDSEDGINVDDCADVSHQVSAVL 62 + Q L + I + + G EL IE ++ S LRI I ++GI++DDC ++S ++ +L Sbjct: 2 ITQDLHDKIESLITQKGLELYDIELLKENESMILRISIFKKEGISLDDCENISTLIAPLL 61 Query: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 DVE AY+LEVSSPG++R L +H+ +G++V + + N+ G++++ + Sbjct: 62 DVELSDLEAYHLEVSSPGVERNLKKPKHFLCSIGQKVAVTM----SNKTIINGILESYNT 117 Query: 123 EMITVTV-----------------EGKDEVFALSNIQKANLVPHF 150 + IT+ E K + L+ +K + + Sbjct: 118 DEITIKEILKPTKKKQNNLKESSQEVKTHIIKLNETKKVKTIFDW 162 >UniRef50_A6GNL5 Putative uncharacterized protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GNL5_9BURK Length = 171 Score = 118 bits (297), Expect = 6e-26, Method: Composition-based stats. Identities = 51/145 (35%), Positives = 84/145 (57%), Gaps = 11/145 (7%) Query: 12 ITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPITVA 71 A + +LG E+ IE R LRI IDS G+ V+DC VSHQ++ + VE+ Sbjct: 28 ADAVISSLGLEVADIE--REGNGLLRIMIDSPTGVTVEDCEKVSHQLTHLFTVENVNYE- 84 Query: 72 YNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGE--MITVTV 129 LE+SSPG+DR L + + RF+ +EV+L + A+ N+++++GV++ + + VT Sbjct: 85 -RLEISSPGVDRVLRRKKDFERFLDQEVSLKFKRAINNQKQFKGVLQKGKEQAWGVLVTP 143 Query: 130 EGKDEV-----FALSNIQKANLVPH 149 +GK+ F ++++ A LVPH Sbjct: 144 DGKNAEPYLLDFEITDLAGARLVPH 168 >UniRef50_Q1IZ05 Ribosome maturation factor rimP n=4 Tax=Deinococci RepID=RIMP_DEIGD Length = 155 Score = 117 bits (294), Expect = 1e-25, Method: Composition-based stats. Identities = 43/132 (32%), Positives = 63/132 (47%), Gaps = 8/132 (6%) Query: 8 LTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDS--EDGINVDDCADVSHQVSAVLDV 64 L + ++ LG+E++ ++ GR + I +D E + V+D S V A D Sbjct: 12 LRTLAEGVLQPLGYEVLDVQVQNPGRRPIVVIRMDRLDEQPVTVEDLETASRAVGAEFDR 71 Query: 65 EDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEM 124 DPI Y LE+ SPG RPL A HY R +G + + + + IKAVDGE Sbjct: 72 VDPIAGEYRLELESPGAKRPLTRARHYERMLGLKARVR-----GDGHSFTAPIKAVDGEQ 126 Query: 125 ITVTVEGKDEVF 136 +T V G+D Sbjct: 127 VTFDVGGEDVTL 138 >UniRef50_A8EYF2 Ribosome maturation factor rimP n=1 Tax=Rickettsia canadensis str. McKiel RepID=RIMP_RICCK Length = 125 Score = 117 bits (294), Expect = 1e-25, Method: Composition-based stats. Identities = 48/124 (38%), Positives = 77/124 (62%), Gaps = 2/124 (1%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG--INVDDCADVSHQV 58 M T+EQ++T +I + +GFELV ++F + + I IDS + ++V+DC VS + Sbjct: 1 MQTIEQQITNVIEESLIDMGFELVLVKFKGVNSKVVEILIDSLNSEKVSVEDCTKVSRTI 60 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 A+LDVE+ I A +LEV+S GL+RPL E+Y RF+G EV + L+ + ++ +QG I Sbjct: 61 PAILDVENLIEDASSLEVASSGLERPLVKFENYNRFLGREVKITLKELLNDKTSYQGKII 120 Query: 119 AVDG 122 + Sbjct: 121 KAEN 124 >UniRef50_A9ITY3 Ribosome maturation factor rimP n=11 Tax=Burkholderiales RepID=RIMP_BORPD Length = 163 Score = 117 bits (294), Expect = 1e-25, Method: Composition-based stats. Identities = 46/155 (29%), Positives = 72/155 (46%), Gaps = 18/155 (11%) Query: 8 LTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDP 67 L + + + ELV +E R LR+ ID G+ ++DC VS Q+S V +VE+ Sbjct: 4 LYALTQQALAGMDVELVDVE--RAALGLLRVTIDKAGGVRIEDCEQVSRQLSRVYEVENI 61 Query: 68 ITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEM--- 124 LEV SPG+DRPL T RF GE + + LR + R+ + G++ A + Sbjct: 62 --DYKRLEVGSPGVDRPLRTEAELRRFAGERIEIKLRQPLDGRKVFSGILSAPANDGAAA 119 Query: 125 ------ITVTVEGKDEVF-----ALSNIQKANLVP 148 + E K + L ++++A L P Sbjct: 120 DAQPAVFGLEFEAKKDDIQVLNFTLGDVERAKLDP 154 >UniRef50_A5GVG1 Ribosome maturation factor rimP n=7 Tax=Cyanobacteria RepID=RIMP_SYNR3 Length = 155 Score = 117 bits (293), Expect = 1e-25, Method: Composition-based stats. Identities = 35/144 (24%), Positives = 66/144 (45%), Gaps = 3/144 (2%) Query: 6 QKLTEMITAPVEALGFELVGIEFIRGRTST-LRIYIDSEDG--INVDDCADVSHQVSAVL 62 + + + +A ++LGF + + R L + + DG +N+DDCA S L Sbjct: 7 EPIEALASATAQSLGFLMESVVLHSHRAPQALIVAVRKGDGSDVNLDDCASFSQAFGEAL 66 Query: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 + + +T AY LE++SPGL L + F G V + R A + +G + D Sbjct: 67 ETGELLTGAYVLEITSPGLGDVLQQDRDFRSFRGFPVCVRQRDAKGGEIQREGTLLGRDA 126 Query: 123 EMITVTVEGKDEVFALSNIQKANL 146 + + + + G+ + S++ + L Sbjct: 127 DAVELNLRGRIQRIPRSDVLEVRL 150 >UniRef50_D2QL24 Putative uncharacterized protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QL24_9SPHI Length = 170 Score = 116 bits (292), Expect = 2e-25, Method: Composition-based stats. Identities = 42/170 (24%), Positives = 79/170 (46%), Gaps = 28/170 (16%) Query: 5 EQKLTEMITAPVEALGFELVGIEF--IRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVL 62 + K+TE++ ++ F +V I+ +G + I +DS+ GI +DDCAD+S ++ + Sbjct: 4 KAKITELLQPYLKNDLFYIVDIQVAGRQGGRLKVTILLDSDAGITIDDCADISRRLGGQM 63 Query: 63 DVEDPITV-AYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 D + + LE+SSPG+D PL + + R VG ++ + L V +GV+++V Sbjct: 64 DEMNFFGDSPFTLEISSPGVDYPLTFSRQFVRNVGRQLIVTLTDGV----IRKGVLESVA 119 Query: 122 GEMITVTVEGKDEV---------------------FALSNIQKANLVPHF 150 + I + +E + + I+KA + F Sbjct: 120 EDHIVLDIEAEKKSKSKKKKDADVSPDLQPVGPTPILFGQIKKAQVEVSF 169 >UniRef50_Q47RV4 Ribosome maturation factor rimP n=1 Tax=Thermobifida fusca YX RepID=RIMP_THEFY Length = 157 Score = 116 bits (292), Expect = 2e-25, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 78/151 (51%), Gaps = 6/151 (3%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSA 60 ++L +++ + G +L G++ G+ +R+ +DS+DG++++ +VS ++S Sbjct: 4 QARRERLAQLVAPILAEAGLDLEGLDITPVGKRRLVRVVVDSDDGVDLERIGEVSQKIST 63 Query: 61 VLDVEDPITV-AYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 LD D + Y LEV+SPG+DRPL H+ R G V + + +G + Sbjct: 64 ALDEVDVMGQSPYVLEVTSPGVDRPLTEPRHWRRARGRLVH----APLVAGGQVKGRVID 119 Query: 120 VDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 D +T V+G+ +V+A S++ + + F Sbjct: 120 ADETGVTFDVDGQSQVYAFSDLGRGKVQVEF 150 >UniRef50_D1BJ69 Uncharacterized conserved protein n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BJ69_SANKS Length = 181 Score = 116 bits (291), Expect = 3e-25, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 63/154 (40%), Gaps = 10/154 (6%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYID----SEDGINVDDCADVSH 56 S + +++ + + VE+ G L ++ G + +R+ +D + +D A+VS Sbjct: 4 SPIAEQVADAVRPGVESAGLVLEDVQVAPAGARTVVRVVLDLTEDQTGALGLDQVAEVSR 63 Query: 57 QVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGV 116 +S LD + + LEV+SPG RPL H+ R V + L + Sbjct: 64 VISDTLDTLPALPGKFTLEVTSPGTSRPLTELRHFKRARTRLVAVTLVEGAP----FTER 119 Query: 117 IKAVDGEMITVT-VEGKDEVFALSNIQKANLVPH 149 + +V+ E++ +G + + + Sbjct: 120 LTSVEDEVLVFEGADGAPHEVPFAAVSSGQVEVE 153 >UniRef50_A5ZWL4 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZWL4_9FIRM Length = 129 Score = 115 bits (290), Expect = 3e-25, Method: Composition-based stats. Identities = 39/88 (44%), Positives = 49/88 (55%), Gaps = 1/88 (1%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIRG-RTSTLRIYIDSEDGINVDDCADVSHQVSAV 61 EQK ++ VE GFELV +E+++ LR YID GI V+DC VS S Sbjct: 33 EYEQKAEALLAPIVEGQGFELVDVEYVKEAGNWYLRGYIDKPGGITVNDCEAVSRAFSDK 92 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAE 89 LD D I +Y +E+SSPGLDRPL Sbjct: 93 LDENDFIEDSYIMEISSPGLDRPLKRRR 120 >UniRef50_UPI0001BCD1F0 hypothetical protein AmarD1_13863 n=1 Tax=Aeromicrobium marinum DSM 15272 RepID=UPI0001BCD1F0 Length = 160 Score = 115 bits (290), Expect = 4e-25, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 16/158 (10%) Query: 4 LEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVL 62 ++++ T ++ + VE G EL + GR LR+ +DS+DG+ +D V+ ++AVL Sbjct: 1 MDERFTALVRSCVEPEGLELDDLTISAAGRKRVLRVALDSDDGVGIDQITAVTRALNAVL 60 Query: 63 D-----VEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI 117 D V Y LEV+S G+ PL + H+ R G V + L + G I Sbjct: 61 DDDPAAVAALGGTPYTLEVTSRGVSSPLTSPRHWRRNHGRLVKVEL----TDGAVETGRI 116 Query: 118 KAVDGEMITVTVEGKD------EVFALSNIQKANLVPH 149 + T+ + + A + +A + Sbjct: 117 TSSTDTHATLAQQERRGAPTDIREIAYPEVARALVQVE 154 >UniRef50_B2GKR8 Ribosome maturation factor rimP n=1 Tax=Kocuria rhizophila DC2201 RepID=RIMP_KOCRD Length = 163 Score = 115 bits (289), Expect = 5e-25, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 62/158 (39%), Gaps = 20/158 (12%) Query: 8 LTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDG---INVDDCADVSHQVSAVLD 63 + + V A G L E G T TL++ +D DG + +D A V+ ++S LD Sbjct: 9 IRATVEPVVAAAGLHLEECELKGQGATRTLQVLVDLPDGTEALGLDRVAAVAQEISDALD 68 Query: 64 VEDPITVA-YNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 +DP+ Y LEVSSPG R L T H+ R VG V + ++ + Sbjct: 69 RDDPVPGPPYELEVSSPGATRTLETPRHWRRTVGHLVRIRTLE----GERYTARLLEAHE 124 Query: 123 EMITVTVEGKDE-----------VFALSNIQKANLVPH 149 + V + + ++I+ A Sbjct: 125 DHAVVQRSHQPKKGMPVKLLDPERVDYASIRTARSEVE 162 >UniRef50_B1XY65 Ribosome maturation factor rimP n=57 Tax=Burkholderiales RepID=RIMP_LEPCP Length = 183 Score = 114 bits (287), Expect = 8e-25, Method: Composition-based stats. Identities = 49/158 (31%), Positives = 78/158 (49%), Gaps = 23/158 (14%) Query: 9 TEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG----------INVDDCADVSHQV 58 + + V +G+ELV E R L +YID G + V+DC V+ Q+ Sbjct: 4 QQAVETTVTGMGYELVECE--RSARGLLCVYIDRVPGSVYLTGPGEFVLVEDCELVTRQL 61 Query: 59 SAVLDVEDPITVAY-NLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVI 117 + +VE+ Y LEVSSPGLDRPL + RF+G +V + L+ Q R+ ++G++ Sbjct: 62 RYLFEVENV---DYSRLEVSSPGLDRPLRKVGDFLRFLGSDVDVTLKAPFQGRKNYRGLL 118 Query: 118 KAVDGE-----MITVTVEGKDEV--FALSNIQKANLVP 148 + + +D+V FAL +++A LVP Sbjct: 119 RQAGDTPEQGFELVFQDGKEDKVLGFALDEVREARLVP 156 >UniRef50_A3PY72 Ribosome maturation factor rimP n=18 Tax=Mycobacterium RepID=RIMP_MYCSJ Length = 192 Score = 114 bits (287), Expect = 8e-25, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 20/162 (12%) Query: 5 EQKLTEMITAPVEALGFELVGIEFIRGRTS-TLRIYIDSEDGINVDDCADVSHQVSAVLD 63 ++++ E++ G+E+ + G + + +D + +++D A +S S LD Sbjct: 15 QEQVKELLDGEFARAGYEIENVVIDGGARPPRITVVVDGDRPLDLDTVASLSRSASEQLD 74 Query: 64 VEDPITVA-------YNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGV 116 D Y LEV+SPG+DRPL T +HY R G +V L L + + G Sbjct: 75 RVDESGPGVTADAATYVLEVTSPGVDRPLTTEKHYRRARGRKVELTL----SDGSQLTGR 130 Query: 117 IKA--VDGEMITVTVEGK------DEVFALSNIQKANLVPHF 150 I A DGE +++ V L I KA + F Sbjct: 131 IGALTADGESVSLVVREGARANFSVRELPLEGIVKAVVQVEF 172 >UniRef50_D0LBI5 Putative uncharacterized protein n=1 Tax=Gordonia bronchialis DSM 43247 RepID=D0LBI5_GORB4 Length = 179 Score = 114 bits (287), Expect = 8e-25, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 10/156 (6%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVS 59 M +L +++ V GF+L + R + +D + G ++D A++S ++ Sbjct: 1 MPIGSPELNDLVEKVVTDRGFDLEDVVVRRRDGRDEFSVVVDRDGGSDLDVLAELSTEIG 60 Query: 60 AVLDVEDPITVA-YNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 VLD + A Y LEV+SPG+DRPL H+ R +G V + G + Sbjct: 61 EVLDAVPALADAAYTLEVTSPGIDRPLTAPRHWRRALGRRVRIE----RDGSDAVVGRVG 116 Query: 119 AVDGEMITVTVEGKDE----VFALSNIQKANLVPHF 150 V G+ + + V K ++ +A + F Sbjct: 117 QVSGDDVAIVVNHKGRLAVETVGFDSVTRAVVQVEF 152 >UniRef50_B5Y930 Ribosome maturation factor rimP n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=RIMP_COPPD Length = 169 Score = 114 bits (287), Expect = 8e-25, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 58/143 (40%), Gaps = 2/143 (1%) Query: 8 LTEMITAPVEALGFELVGIEFIRGRT-STLRIYIDSEDGINVDDCADVSHQVSAVLDVED 66 L E I+ V + GF + +E + + + + E + + DC ++ + +L+ Sbjct: 10 LEERISKIVVSKGFYFIDLEERMEKGAHIISVVVHGEPSVTIGDCEKLTRAILPLLESFP 69 Query: 67 PITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMIT 126 +LEV+SPGLDR L Y F G + + + + + + E + Sbjct: 70 WYGDNDHLEVTSPGLDRVLKREWEYEIFKGRVIDISFDR-DGKSQTIRAKLVGRENENVV 128 Query: 127 VTVEGKDEVFALSNIQKANLVPH 149 + EG ++KA LV Sbjct: 129 IEYEGNYFRIPFDQVRKAKLVFD 151 >UniRef50_C7RGN7 Putative uncharacterized protein n=3 Tax=Anaerococcus RepID=C7RGN7_ANAPD Length = 147 Score = 114 bits (286), Expect = 1e-24, Method: Composition-based stats. Identities = 43/150 (28%), Positives = 73/150 (48%), Gaps = 6/150 (4%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIRGRTS-TLRIYIDSEDGINVDDCADVSHQVSAV 61 L ++L E+ A +E LG+ELV IEF + + L +I ++DGI ++DC VS + Sbjct: 2 DLTKRLKEIFEADIENLGYELVDIEFKGQKNNKILTFFIYNKDGITIEDCEKVSAFLDEK 61 Query: 62 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVD 121 LD D I +Y LEVSS L RP+ T R E + + L+ + + G I + Sbjct: 62 LDEIDIIKDSYYLEVSSQDLSRPIKTDRDLERNKDELLKIKLK----DGEIFLGKIINIG 117 Query: 122 GEMITVTVEGK-DEVFALSNIQKANLVPHF 150 + +E + + ++++ + F Sbjct: 118 EDFYEFILEDENTKNIKKEDVKEIYIEIVF 147 >UniRef50_Q1AW57 Ribosome maturation factor rimP n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=RIMP_RUBXD Length = 152 Score = 114 bits (286), Expect = 1e-24, Method: Composition-based stats. Identities = 43/148 (29%), Positives = 75/148 (50%), Gaps = 9/148 (6%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG-INVDDCADVSHQVSA 60 +T +L+E + + G ELV F RG L + +D E G ++ + CA + V+ Sbjct: 5 ATRLDRLSEAVERAL-PEGTELVEARFSRG--PLLTLLVDREGGPVDHEFCARIISIVAP 61 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 L+ E + +EVSSPG++RPL H+ RF+G V + + V RR + GVI+ V Sbjct: 62 ALEEE---GYSGMIEVSSPGIERPLTRPSHFRRFIGRRVRVRVGEPVDGRRNFTGVIERV 118 Query: 121 DGEMITVTV--EGKDEVFALSNIQKANL 146 + + +G++ ++ +A+L Sbjct: 119 ADAGFVLRLSEDGEEVELPFGSVTRAHL 146 >UniRef50_C2KR51 Putative uncharacterized protein n=2 Tax=Mobiluncus mulieris RepID=C2KR51_9ACTO Length = 178 Score = 113 bits (285), Expect = 1e-24, Method: Composition-based stats. Identities = 37/152 (24%), Positives = 66/152 (43%), Gaps = 9/152 (5%) Query: 3 TLEQKLTEMITAPVEALGFELVGIEFIRGRT-STLRIYIDSEDG---INVDDCADVSHQV 58 + ++++++ V LG L + + + I++D G I + S ++ Sbjct: 12 DIAAEVSQLLAPTVTQLGLFLEKVCVKGSKNSRQVEIFLDLPAGSGEIGFERLEAASQEI 71 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 S ++D DP+ YNLEVS+ G + L + R VG + + V +++ G I Sbjct: 72 SRLMDSADPVEGKYNLEVSTLGAEHALDNPRLFVRAVGRDAEIT----VAGQKRV-GRIL 126 Query: 119 AVDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 A T +GK E + S +Q A V F Sbjct: 127 AAGETDFTWEEDGKQETISFSALQSARTVVLF 158 >UniRef50_C2FW05 Protein of hypothetical function DUF150 n=2 Tax=Sphingobacterium spiritivorum RepID=C2FW05_9SPHI Length = 156 Score = 113 bits (285), Expect = 1e-24, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 16/159 (10%) Query: 2 STLEQKLTEMI-TAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSA 60 + +EQ++ E++ + +V I+ L I +D + GI +DDC +S V Sbjct: 3 TKVEQRVEELVLEKIGDREDLFIVSIKMQGNG--VLEILVDGDSGIAIDDCVKISRHVGF 60 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 L+ E+ I AY LEVSSPG+D PL Y + +G V + K +G + V Sbjct: 61 HLEEENVIETAYRLEVSSPGIDSPLVLIRQYEKNIGRNVRVKNHE----GEKREGKLLDV 116 Query: 121 DGEMITVTVEGK---------DEVFALSNIQKANLVPHF 150 IT+ K + V I++ ++ F Sbjct: 117 TESAITIEESKKEKGKKAVPVESVIPFEQIKETKVLISF 155 >UniRef50_C2BRP0 Putative uncharacterized protein n=1 Tax=Mobiluncus curtisii ATCC 43063 RepID=C2BRP0_9ACTO Length = 197 Score = 113 bits (285), Expect = 1e-24, Method: Composition-based stats. Identities = 35/150 (23%), Positives = 64/150 (42%), Gaps = 9/150 (6%) Query: 5 EQKLTEMITAPVEALGFELVGIEFIRGRT-STLRIYIDSEDGIN---VDDCADVSHQVSA 60 + + +++ VEA G L I + + I +D DG++ D S + A Sbjct: 39 VEAIIQVVNPVVEAAGLYLEKIAVTGPKHQRVVAISLDLPDGVDNLGSAQLEDASRAIGA 98 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 LD DP++ AY LE+S+ G + L R +G++V + + G++ V Sbjct: 99 ALDAADPLSGAYTLEISTLGAEHELTNLRLARRALGKDVEVRT-----GGQVRAGILTEV 153 Query: 121 DGEMITVTVEGKDEVFALSNIQKANLVPHF 150 ++V +G V+ +I+ V F Sbjct: 154 TETGLSVNDDGDVTVYPFEDIESVRTVILF 183 >UniRef50_C8PR25 Putative uncharacterized protein n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PR25_9SPIO Length = 186 Score = 113 bits (284), Expect = 2e-24, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 71/135 (52%), Gaps = 5/135 (3%) Query: 13 TAPVEALGFELVGIEFIRGRT-STLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPITVA 71 V LG++LV ++ + ++ ++ I S++G+ +DDC+ V + + +V + Sbjct: 53 EQLVTGLGYKLVDLQIVHQKSAWLVKAVIYSKNGVGIDDCSKVHRALLSRAEVL-LNSQD 111 Query: 72 YNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTVEG 131 +EVSSPGL+R + A + F+GE + + L ++ + +G + A D I + + G Sbjct: 112 IQMEVSSPGLNRVIKNAAEFQAFIGENIKV-LEVSCPDW--LEGELLAADSTGIRLNISG 168 Query: 132 KDEVFALSNIQKANL 146 + ++I+KA L Sbjct: 169 EQRDIRYADIKKAKL 183 >UniRef50_Q30SS4 Ribosome maturation factor rimP n=2 Tax=Campylobacterales RepID=RIMP_SULDN Length = 149 Score = 113 bits (284), Expect = 2e-24, Method: Composition-based stats. Identities = 42/151 (27%), Positives = 77/151 (50%), Gaps = 12/151 (7%) Query: 8 LTEMITAPVEALGFELVGIEFIR-GRTSTLRIYI------D-SEDGINVDDCADVSHQVS 59 L + I + V++L EL I R G S R+ + D + G+++D+C +S +S Sbjct: 3 LEKDIESFVKSLDLELYEISVARDGDDSIYRVNVLSTQIEDGKKKGVSLDECVHLSRLIS 62 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 +LDV P++ Y LEV +PG++R + T + + +GE V L L+ + K +G++ Sbjct: 63 PLLDVTPPMSGEYRLEVGTPGIERKVSTLKQFVLSIGERVALTLKS----KEKLKGLLLR 118 Query: 120 VDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 V+ I + V+ ++ + I KA + Sbjct: 119 VEESNIYLDVDAEEVCVEFAQISKAKTYFEW 149 >UniRef50_A3HY55 Putative uncharacterized protein n=1 Tax=Algoriphagus sp. PR1 RepID=A3HY55_9SPHI Length = 157 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 41/160 (25%), Positives = 82/160 (51%), Gaps = 14/160 (8%) Query: 1 MSTLEQKLTEMITAPVEALGFELVGIEFI-RGRTSTLRIYIDSEDGINVDDCADVSHQVS 59 MS L+Q + E++ + +V + + + + L I ID++ G+NV CA+VS V+ Sbjct: 1 MSELKQAIEEIVEKHLPDESHFVVEVNLVPKSGKTVLSILIDADQGLNVQTCANVSRAVA 60 Query: 60 AVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKA 119 L+ ++ ++ AY LEVSSPG+D PL + + + +G E+ ++L + ++ +G + Sbjct: 61 EELEAKELMSEAYILEVSSPGVDYPLSSRRQFQKNIGRELKVLL----TSGQELKGKLLE 116 Query: 120 VDGEMITVTV---------EGKDEVFALSNIQKANLVPHF 150 VD + + V ++ V + ++K + F Sbjct: 117 VDTTGVKMLVKKKEKGKKATEEEVVLSFEEMKKTIVQVSF 156 >UniRef50_B1MD92 Ribosome maturation factor rimP n=4 Tax=Mycobacterium RepID=RIMP_MYCA9 Length = 189 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 68/157 (43%), Gaps = 15/157 (9%) Query: 5 EQKLTEMITAPVEALGFELVGIEF----IRGRTSTLRIYIDSEDGINVDDCADVSHQVSA 60 + ++ E++ G E+ + + GR S + + +DS+ +++D A +S SA Sbjct: 17 DDQVLELLAPEFSRSGVEIESVVVSDGGVAGRPSRIAVVVDSDTPVDLDAVAGLSRTASA 76 Query: 61 VLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 +LD D AY LE+++PG+DRPL T H+ R + L N G I Sbjct: 77 LLDEADTGWQAYELEITTPGVDRPLTTVAHFRRAHLRLAQIRL----TNGEDLLGRIGIT 132 Query: 121 DGEMITVTVEG-------KDEVFALSNIQKANLVPHF 150 + + V + A S+I+ A + F Sbjct: 133 HDDGVQVVLRKPIKGTGWTVRDLAFSDIESAVVQVEF 169 >UniRef50_C7MBA4 Uncharacterized conserved protein n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MBA4_BRAFD Length = 220 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 41/175 (23%), Positives = 70/175 (40%), Gaps = 29/175 (16%) Query: 1 MSTLEQK--LTEMITAPVEALGFELVGIEFIRGRT-STLRIYIDSE----DGINVDDCAD 53 MS LE + L E T + + G L +E RG +R+ +D ++D A+ Sbjct: 1 MSALEDQTILRETATEVLASHGLVLEEVEIRRGGGTPQVRLIVDLPEDQLGSADLDTVAE 60 Query: 54 VSHQVSAVLDVEDPITV--AYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRR 111 S +S +D +D + LEV++PG+DR L H+ R G ++L Sbjct: 61 ASRALSEAVDADDAVLGSAPVLLEVTTPGVDRELTAPRHFRRARGRLLSLTTEE----GT 116 Query: 112 KWQGVIKAVDGEMITVTVE----------------GKDEVFALSNIQKANLVPHF 150 + + AVDGE + + E + L+ + +A + F Sbjct: 117 TLRARLLAVDGEELALRQEPGRDDRGRPLKLPAGTTERLRLPLAEVARARVEVEF 171 >UniRef50_B3QUN0 Ribosome maturation factor rimP n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=RIMP_CHLT3 Length = 182 Score = 112 bits (281), Expect = 4e-24, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 65/159 (40%), Gaps = 21/159 (13%) Query: 13 TAPVEALGFELVGIEFIRGRT-STLRIYIDSEDGINVDDCADVSHQVSAVLDVED----P 67 LV IE +T + ++ D++ GI+V++C +S +SA LD + Sbjct: 24 DPDGNEHEVFLVDIEVHSNKTIDIIEVFADTDSGISVENCKFLSKHISAELDASEEMQAL 83 Query: 68 ITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGE---M 124 + + L VSSPGL RPL Y + +G + + + A + G +++ E Sbjct: 84 LPRHFKLVVSSPGLSRPLTMNRQYKKNIGRLMQVTYQNADGEIKTIDGRFISLEEEAEAS 143 Query: 125 ITVTVEG-------------KDEVFALSNIQKANLVPHF 150 IT+ + + S IQKA + F Sbjct: 144 ITLDITKIQKSKPNAKPKPPELVTIPFSQIQKAIVQVEF 182 >UniRef50_D1C050 Putative uncharacterized protein n=1 Tax=Xylanimonas cellulosilytica DSM 15894 RepID=D1C050_XYLCX Length = 192 Score = 112 bits (281), Expect = 4e-24, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 8/153 (5%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSE----DGINVDDCADVSH 56 S + + ++ V+A G L + R G S +R+ +D + D VS Sbjct: 14 SATAEAVRRVVAPAVDAEGLFLESVSATRAGARSVVRVTVDLPEDAVGSLGSDALDAVSR 73 Query: 57 QVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGV 116 +SA LD +D + Y LEVS+PG RPL H+ R VTL L + + Q V Sbjct: 74 AISAALDADDVVRGVYVLEVSTPGTSRPLTELRHFKRARTRLVTLSLVDGGEAEGRLQDV 133 Query: 117 IKAVDGEMITVTVEGKDEVFALSNIQKANLVPH 149 + DG+ + + G F ++ +++ + Sbjct: 134 VAGTDGDELVLEDGG---RFPVATVRQGRVEVE 163 >UniRef50_Q04GN4 Ribosome maturation factor rimP n=2 Tax=Oenococcus oeni RepID=RIMP_OENOB Length = 156 Score = 112 bits (281), Expect = 4e-24, Method: Composition-based stats. Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 5/147 (3%) Query: 5 EQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSED--GINVDDCADVSHQVSAVL 62 + E I + L + F G + L I ID +D I ++ ++V+ +S L Sbjct: 6 IDTIKEKIQPILSEKHLLLWDLSFFGGSPAVLTILIDGQDHQAIRMNQISEVTSLISDAL 65 Query: 63 D--VEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV 120 D DP YNL++SSPG+DR + T EH +G+ + L L + + +G++K+ Sbjct: 66 DKVEPDPFPDRYNLDISSPGIDRSIKTDEHLDWALGQPIKLNLFEKIDGSKSAEGILKSF 125 Query: 121 DGEMITVTV-EGKDEVFALSNIQKANL 146 I++ V + + F I K +L Sbjct: 126 SDLEISLEVSPAEVKNFPREKISKISL 152 >UniRef50_C7I1W8 Putative uncharacterized protein n=1 Tax=Thiomonas intermedia K12 RepID=C7I1W8_THIIN Length = 191 Score = 112 bits (280), Expect = 5e-24, Method: Composition-based stats. Identities = 48/117 (41%), Positives = 68/117 (58%), Gaps = 6/117 (5%) Query: 10 EMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDG--INVDDCADVSHQVSAVLDVEDP 67 + I V +LG ELV +E + LR+ ID DG + V+DC V+ Q+ V +VE+ Sbjct: 5 QAIDTAVTSLGLELVEVEHL--PRGLLRVTIDHADGAPVTVEDCERVTRQLQYVFEVENV 62 Query: 68 ITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEM 124 LEVSSPGLDRPL AE + RF G E+ +VLR+ Q R+K++GV+ + Sbjct: 63 DYG--RLEVSSPGLDRPLRKAEDFVRFAGLEIDVVLRVPFQGRKKYRGVLLERSQDD 117 >UniRef50_Q0I7K5 Ribosome maturation factor rimP n=8 Tax=Chroococcales RepID=RIMP_SYNS3 Length = 157 Score = 111 bits (279), Expect = 7e-24, Method: Composition-based stats. Identities = 33/142 (23%), Positives = 62/142 (43%), Gaps = 3/142 (2%) Query: 8 LTEMITAPVEALGFELVGIEFIRG-RTSTLRIYIDSEDG--INVDDCADVSHQVSAVLDV 64 L ++ +A GFEL ++ + + T++I I G + +DDCA S + L+ Sbjct: 11 LKDLASATAVDHGFELADLQVLAHMQPMTVQIQIRRSSGDDVTLDDCAAFSAPMGEALEN 70 Query: 65 EDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEM 124 + AY LE+SSPG+ L + + F V ++ R +K G + Sbjct: 71 SAVLNEAYVLEISSPGIGDHLQSDRDFQTFRRYPVDVIHRDPDGAEQKHSGTLLERTENH 130 Query: 125 ITVTVEGKDEVFALSNIQKANL 146 + +++ G+ + +I L Sbjct: 131 LKISIHGRIKQIPRDSILSVEL 152 >UniRef50_UPI000185BE37 conserved hypothetical protein n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185BE37 Length = 190 Score = 110 bits (277), Expect = 1e-23, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 73/160 (45%), Gaps = 17/160 (10%) Query: 6 QKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVLD- 63 +K+ + ++ + +G ++ ++ +R G S + + ID+++ ++D +H+VS+ LD Sbjct: 7 EKIEQFVSPALAQIGLDVEDVKVVRAGAKSQVIVLIDADERPDLDVLEQATHEVSSALDA 66 Query: 64 -----VEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 D Y LEVS+PG+D PL H+ R G + L + G + Sbjct: 67 AEARGEADFGAQGYTLEVSTPGIDAPLTQPRHWRRNRGRIAEISLADGSAIAARI-GAL- 124 Query: 119 AVDGEMITV--------TVEGKDEVFALSNIQKANLVPHF 150 + D E I + ++ + L+N+ +A + F Sbjct: 125 SPDEESIILVTSKGPKGRLKAVGQRVQLTNVARAVVQVEF 164 >UniRef50_A9BCI2 Ribosome maturation factor rimP n=2 Tax=Prochlorococcus marinus RepID=RIMP_PROM4 Length = 155 Score = 110 bits (277), Expect = 1e-23, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 64/148 (43%), Gaps = 3/148 (2%) Query: 2 STLEQKLTEMITAPVEALGFELVGIEFIRGRTST-LRIYIDSE--DGINVDDCADVSHQV 58 + + L + + G E+V ++F +++ I + +++DDCA S + Sbjct: 3 NPIVTSLKILASNTAADKGLEVVELKFNPHSKPITIQVQIQKKPKKDVSLDDCAQFSELI 62 Query: 59 SAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 118 S +++ I Y LE+SSPGL L T + + F G + ++ + + G++ Sbjct: 63 SETIELSKLINEPYLLEISSPGLGDLLQTDKDFKTFKGFPIEVLFKNNENTKLTKSGLLH 122 Query: 119 AVDGEMITVTVEGKDEVFALSNIQKANL 146 E + + ++G+ ++ L Sbjct: 123 ERSKEYLLINIKGRISKIPREDVITVQL 150 >UniRef50_D1B5D8 Putative uncharacterized protein n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B5D8_THEAS Length = 150 Score = 110 bits (276), Expect = 1e-23, Method: Composition-based stats. Identities = 44/144 (30%), Positives = 69/144 (47%), Gaps = 9/144 (6%) Query: 9 TEMITAPVEALGFELVGIEFIRG-RTSTLRIYIDSED-GINVDDCADVSHQVSAVLDVED 66 + I VE LG+ V ++ +R +R+ IDS D I DC VS +V +LD E Sbjct: 10 KDRIRRLVEDLGYICVEVKLVRDLGGQVVRVTIDSPDAPIGHGDCEAVSRKVGELLDGEG 69 Query: 67 --PITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAV-DGE 123 + Y LEVSSPG +RPL + + + RF G ++ + +K I V D Sbjct: 70 EGFLKGRYYLEVSSPGPNRPLLSLDDFRRFKGSKIRVST----GKGKKRTYFIDDVFDDG 125 Query: 124 MITVTVEGKDEVFALSNIQKANLV 147 M+ + EG++ V +++ L Sbjct: 126 MVRLVHEGEELVCPWGDLKNPRLC 149 >UniRef50_C1RGC3 Uncharacterized conserved protein n=1 Tax=Cellulomonas flavigena DSM 20109 RepID=C1RGC3_9CELL Length = 177 Score = 110 bits (276), Expect = 2e-23, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 64/161 (39%), Gaps = 23/161 (14%) Query: 8 LTEMITAPVEALGFELVGIEFIRGRTS-TLRIYID----SEDGINVDDCADVSHQVSAVL 62 + E++ V G L G+E S +R+ +D +++D DV+ VS L Sbjct: 1 MREVVETAVTGAGLLLDGLEVAGSGRSTVVRVTVDLADDDPGTLDLDRVGDVTRAVSDAL 60 Query: 63 DVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDG 122 D D + AY LEV SPG +RPL A H+ R G V + + G + V Sbjct: 61 DAADVLPGAYTLEVGSPGAERPLTLARHWRRARGRTVLVR----RTDGTTLTGRLDGVAD 116 Query: 123 ----EMITVTVE----------GKDEVFALSNIQKANLVPH 149 E++ V V G A +++ A + Sbjct: 117 GDAPELVVVPVTDPGKGRRPVVGAPVTLAWDDVRDARVQVD 157 >UniRef50_Q72KG3 Ribosome maturation factor rimP n=3 Tax=Thermaceae RepID=RIMP_THET2 Length = 157 Score = 110 bits (275), Expect = 2e-23, Method: Composition-based stats. Identities = 46/140 (32%), Positives = 67/140 (47%), Gaps = 8/140 (5%) Query: 8 LTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDP 67 L +++ V LG +++ + F RG +R+ E I V D + S + A LD EDP Sbjct: 19 LWQLVEEAVSPLGLDVLEVHFARGE-LLVRLERKDERPITVADLEEASRHIEAALDREDP 77 Query: 68 ITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITV 127 I +Y L V SPG RPLFT H+ RF G L+ V + G I V+GE + Sbjct: 78 IPGSYRLLVESPGPKRPLFTRRHFERFQG------LKAKVPGPEGFTGRILRVEGEEVVF 131 Query: 128 TVEGKDEVFALSNIQKANLV 147 V ++ + +ANL Sbjct: 132 QVGDEERRLRIGTF-RANLA 150 >UniRef50_B1X3N5 Putative uncharacterized protein n=1 Tax=Paulinella chromatophora RepID=B1X3N5_PAUCH Length = 159 Score = 108 bits (271), Expect = 6e-23, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 56/115 (48%) Query: 36 LRIYIDSEDGINVDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFV 95 ++I + SE ++++DC S QV LD + AY LEVSSPG++ L + F Sbjct: 42 IQISVSSERDVSINDCTVFSRQVEEALDNSSLLKEAYILEVSSPGINEELINDRDFRIFR 101 Query: 96 GEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTVEGKDEVFALSNIQKANLVPHF 150 G V +V+ + + +G++ D + I + + G+ ++ +L+ F Sbjct: 102 GFPVEVVVNKSKTPTNRREGLLLERDDDSILINIRGRIHRIPREDVISVHLIMPF 156 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.314 0.182 0.536 Lambda K H 0.267 0.0557 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,147,689,234 Number of Sequences: 3077464 Number of extensions: 62504075 Number of successful extensions: 150890 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 888 Number of HSP's successfully gapped in prelim test: 91 Number of HSP's that attempted gapping in prelim test: 148614 Number of HSP's gapped (non-prelim): 1015 length of query: 150 length of database: 1,040,396,356 effective HSP length: 113 effective length of query: 37 effective length of database: 692,642,924 effective search space: 25627788188 effective search space used: 25627788188 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.0 bits) S2: 88 (38.1 bits)