HHsearch 1.5 NAME batch____ FAM FILE query COM //bmm/www/servers/phyre2/HH/hhmake -i /bmm/www/servers/phyre2/public_html/phyre2_output/75bda8a866578675/query.a3m -o /bmm/www/servers/phyre2/public_html/phyre2_output/75bda8a866578675/query.hhm DATE Thu Jan 12 20:56:39 2012 LENG 103 match states, 103 columns in multiple alignment FILT 106 out of 226 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.5 EVD 0.4314 -0.4266 SEQ >ss_pred CEEEEEECCEEEEECCCCEEEEECCCCCCCCEEEEEEEEEEECCCEEEECCCEECCCEEEEEEEEECCCCEEEEEEECCCCCCEEEECCCCCEEEEEEEE EEC >ss_conf 9899998998769715998992034778888789716899943983598141746819999999732477099999327768546421036404999967 629 >Consensus MyAIixxgGkQyxVxxGdxixvxxlxxxxGxxixlxxVLxxxxxxxxxiGxPxvxxaxVxaxVxxxxrxxKixvxKxkrRKxxxrxxGhRqxxTxirIxx Ixa >batch____ MYAVFQSGGKQHRVSEGQTVRLEKLDIATGETVEFAEVLMIANGEEVKIGVPFVDGGVIKAEVVAHGRGEKVKIVKFRRRKHYRKQQGHRQWFTDVKITG ISA >UniRef50_A2BY51(17-118:146) 50S ribosomal protein L21 n=6 Tax=Prochlorococcus marinus RepID=RL21_PROM5 E=3e-10 s/c=0.65 id=30% cov=100% LYAIAETSGQQFWFEVDRYYDIDRLNAKEKDKITIDKILLIKDKENVSIGKPYIKNAKIELEVVSHKRDKKIIVYKMRPKKKTRRKMGHRQELTRVMVKS IS- >UniRef50_B0CU76(22-124:131) Predicted protein (Fragment) n=1 Tax=Laccaria bicolor S238N-H82 RepID=B0CU76_LACBS E=5e-19 s/c=0.93 id=28% cov=98% -YVVASFAGKKYILTPRDLLTVPRLrDVKVGDVLQLDEIHELGSREYTLRGNPVIPPsrVQVEATVVEHTKGTMEYIFKKKRRKGYQKTIQHKQPYTRLR IGDI-- >UniRef50_D0JA35(2-102:115) 50S ribosomal protein L21 n=2 Tax=Blattabacterium RepID=D0JA35_BLASP E=3e-18 s/c=0.92 id=30% cov=98% IYAIVDIQGIQFKLIENKYVYVPLLSSmSLGEKILLDRIFFFYKNGFPKIGSPFLENIKVEVEILQHLKGDKVIIFKKKRRKGYKVKNGFRPFFTKIKVI S--- >UniRef50_UPI0000E45F54(35-139:142) PREDICTED: similar to mitochondrial ribosomal protein L21 n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E45F54 E=1e-21 s/c=0.98 id=26% cov=100% -FAIVYVSGTQHKVTSGDLILLQNdLPADVGERIRLEKVLLLGGDNFTLIGKPMlsLDTVRVEATVIEKTISEKKVHFRFKKRKRVARYRETYTNLTVLR INSIEA >UniRef50_Q47MV4(1-102:103) 50S ribosomal protein L21 n=18 Tax=Actinobacteria (class) RepID=RL21_THEFY E=4e-20 s/c=0.97 id=30% cov=100% MYAIVRAGGRQEKVSVDDVVTIDRVAKEAGDTLNLEP-LLVVDNGKVVSDAAELNKYQVTAEVLGEVTGPKIKILKYKSKTGYKRRLGHRQKYTQIRVTG IAA >UniRef50_A5E6H7(80-184:186) Putative uncharacterized protein n=1 Tax=Lodderomyces elongisporus RepID=A5E6H7_LODEL E=1e-07 s/c=0.55 id=24% cov=99% -YAIFRIHNLPYLVTKGDKVYLPyKLKGvSTGDVLDLNDVTTLGTPNYTYHIPQGIDKSLFhlKASVLEITREPLYQVVRKRQRCRRKKTYQVEPFQTVL TINELS- >UniRef50_Q85FH8(13-117:127) 50S ribosomal protein L21, chloroplastic n=5 Tax=Embryophyta RepID=RK21_ADICA E=2e-16 s/c=0.82 id=27% cov=98% -YAIIDIGGKQLRVQPGRFYDVRHFPSNLNtrgsdTKVSMGRVLLIRDGSKIDIGSPWLANAVVKGRILHNCFEDKLVIKKIFSKRKTRGSRGCRGSIIR FAIDSI-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * 3851 * 5514 138 * * * * * * * * * 1 0 * * * * * * 4590 0 0 Y 2 * * 6098 5342 2053 * 5790 * 5646 6444 * 6208 * * * * * * 6141 638 2 0 * * * * * * 5540 0 0 A 3 235 5214 * * 5933 6062 * 6093 * * * * * * * 6906 * 3853 * * 3 0 * * * * * * 5547 0 0 V 4 * * * * * * * 1017 * 4844 * * * * * * 4780 1239 * 6488 4 0 * * * * * * 5547 0 0 F 5 3452 * * * 3054 * * 1267 * 4418 * * * * * * * 1617 * * 5 0 * * * * * * 5547 0 0 Q 6 5886 * 4830 1698 * * 4570 * 2266 6263 * 4921 * 3538 3027 4217 * 5267 * 4180 6 0 * * * * * * 5547 0 0 S 7 3394 4929 4194 * 5410 * 7037 1956 * 3803 * 5071 * 5334 * 3846 2155 3358 * 6531 7 0 * * * * * * 5547 0 0 G 8 4854 5576 * * * 817 3490 * 5234 4460 * 4144 * 5809 4701 3489 * 6186 * * 8 0 * * * * * * 5547 0 0 G 9 4741 * 6894 * * 396 * * * * * 3578 5977 * * 3399 * * * * 9 23 5977 * 0 * * * 5547 1000 0 K 10 * * * 6381 4318 6273 4271 6709 1102 5655 7376 6263 * 4342 2293 4966 4314 6666 * 6245 10 0 * * * * * * 5547 0 0 Q 11 * * * * * * * 6499 * * 6669 6186 3293 235 * * 6192 * * * 11 0 * * * * * * 5547 0 0 H 12 * * * 5132 2816 * 4117 * * 4052 5400 * * 6618 4759 * * 6828 5720 706 12 0 * * * * * * 5569 0 0 R 13 * * * 7122 5284 * * 4484 1340 2662 * 5647 * 6967 2321 7037 5975 5217 3608 6803 13 0 * * * * * * 5569 0 0 V 14 3960 * * * 7115 * * 3479 * 3612 5940 * * * * * 6791 451 * * 14 0 * * * * * * 5569 0 0 S 15 3882 * 7211 1833 6096 * 5690 5237 4019 * * * * 4089 3377 2893 2248 5482 * * 15 0 * * * * * * 5576 0 0 E 16 4650 6096 5724 1634 * * * * 3010 4622 * 6863 2238 4684 5440 4867 4047 4002 * * 16 0 * * * * * * 5576 0 0 G 17 * * 3519 5580 * 455 * * 6620 * * 3396 * * 4904 5390 * * * * 17 0 * * * * * * 5576 0 0 Q 18 7130 * 1060 3803 * * 5646 * 3954 * 6101 7092 * 3131 2919 3718 * * 6294 * 18 16 6513 * 1000 1000 * * 5576 1000 0 T 19 6190 * 5434 4067 3234 * 5352 3628 4058 3048 * 6513 * 5072 4576 4688 3784 2051 5521 4215 19 0 * * * * * * 5576 0 0 V 20 * * * * 4777 * * 1550 * 1826 * * * * * * * 2460 * 2658 20 0 * * * * * * 5593 0 0 R 21 5760 5180 2626 4693 4771 * 5689 4713 3139 3172 * 4396 * 5470 3284 5055 2911 5327 * 3754 21 0 * * * * * * 5593 0 0 L 22 * 5921 * * 6720 * * 1939 * 2411 5238 * * * * * 3904 1212 * * 22 0 * * * * * * 5593 0 0 E 23 5300 * 2174 1785 6539 6522 5336 * * * * 3165 2147 4700 5161 * * * * 6290 23 208 3046 6214 0 * * * 5593 3506 0 K 24 6462 * * * 4353 6250 3485 * 1755 3652 * 4294 5283 5361 2022 5041 5785 * 6610 4168 24 17 6441 * 0 * 0 * 5573 1000 1000 L 25 4943 * * * 4829 * 6520 2387 * 985 4444 * * * 5615 5514 4949 3994 5415 5768 25 179 3102 * 850 1168 * * 5593 3604 0 D 26 3517 * 2905 3751 * 4262 6290 * 2207 6299 * 3181 2569 5359 5650 4240 6242 7548 * 5952 26 118 3870 6626 216 2849 * * 5593 3132 0 I 27 2286 * 5393 5506 5029 2413 7161 6118 3762 3975 * 7673 4491 3983 * 4353 4860 2938 * 4452 27 108 3794 * 147 3368 * 0 5590 3205 1000 A 28 3315 * 2531 2139 6156 5641 * 6263 3127 6182 * 3246 6303 4133 5949 3499 6901 4793 * * 28 88 4314 6799 769 1275 0 * 5590 2848 1000 T 29 2646 * 6930 3069 * * * 4137 4386 3772 * * 2697 6047 6591 5010 4791 1795 * * 29 0 * * * * * 0 5593 0 1000 G 30 6188 * 5361 * * 366 * * 4230 * * 3656 5632 6390 6104 7163 * * * * 30 24 5929 * 2322 322 0 * 5593 1000 1000 E 31 4006 * 1349 3215 * 3899 * * 4309 * * 5101 * 4533 6539 2625 3740 * * * 31 0 * * * * * * 5593 0 0 T 32 5331 6579 4411 2499 6287 * 6989 3613 2432 6935 * 4978 7043 4522 3549 4469 3163 3060 * * 32 26 5812 * 0 * * * 5593 1534 0 V 33 6214 * * 6626 5090 * 6375 1556 6399 2001 * * 6598 * 6196 * * 1747 * 6440 33 19 * 6282 * * * * 5593 0 0 E 34 5791 * 3826 2011 5186 * 5078 4875 3996 4271 * 4204 6973 4354 3446 4786 3285 3583 * 4939 34 20 6164 * 3000 193 * 0 5578 1000 1000 F 35 6299 * * * 1867 * * 2778 6603 988 5062 * * * * * * 5452 * * 35 0 * * * * * 0 5578 0 1000 A 36 6265 * 2021 3097 * 3692 5925 * 3710 6392 * 2502 3790 5982 4234 4602 3819 * * 6412 36 19 * 6250 * * 0 * 5578 0 1000 E 37 5331 6473 2517 3252 * * 6294 * 1959 6280 * 4161 4766 5129 2447 4961 4864 5038 * * 37 30 * 5610 * * 0 * 5575 0 1000 V 38 4049 * * * * * * 2198 5661 4325 * * * * * 6669 * 639 * * 38 13 * 6836 * * 0 * 5575 0 1526 L 39 7050 * * 6285 6763 * 5279 4329 6443 528 4249 6895 * * * 4797 4080 5351 * 6778 39 14 * 6673 * * 0 * 5598 0 1000 M 40 2763 4797 * 4797 3564 6613 * 6908 * 1543 2473 * * * * * 4085 4163 * 4661 40 10 7127 * 0 * * 0 5595 1000 1000 I 41 4384 5766 * * 4073 7442 * 2642 6585 1886 5546 7127 * * 6929 6923 5279 1660 * 4636 41 11 * 7005 * * * 0 5595 0 1000 A 42 6430 6420 5372 6260 4668 1347 5425 5381 3207 6475 * 3295 * 5922 4945 2905 * 4421 * 6733 42 54 6373 5339 1000 1000 930 1074 5599 1000 1546 N 43 6073 6270 1750 3720 * 3585 5773 * 4187 * 5726 3656 * 5883 * 1974 3780 * * * 43 71 5092 5719 0 * 340 2250 5614 1615 2225 G 44 4794 * 2904 2584 * 1820 * * 3639 * 6785 3685 4801 * 3114 4468 6641 * * 7186 44 11 6981 * 0 * * 0 5586 1000 1758 E 45 3848 * 2009 2409 * 2752 6360 * 3900 * * 3011 * 4644 6956 4000 5985 * * 5982 45 98 4700 5212 1988 419 1443 661 5586 2453 1758 E 46 5772 * 4184 2638 2543 3736 * 7053 2711 4164 6462 3997 * 5651 5774 4485 4516 5792 5975 3858 46 39 6823 5810 0 * 2190 357 5581 1000 2408 V 47 4486 * * * 4530 * * 2765 4288 4281 6561 * 4211 * * 4010 1719 2194 6208 * 47 10 7160 * 0 * 603 1550 5574 1000 2657 K 48 5425 * 5926 4298 4267 * 6272 3633 3210 2311 5349 5080 * 4055 4811 4434 3517 3236 5927 4368 48 22 * 6016 * * * 0 5579 0 1544 I 49 5730 * 6833 6642 3579 * 5668 1751 4392 3127 6457 6217 * 6212 5235 4601 * 1867 6586 6743 49 19 6235 * 0 * 1000 1000 5580 1000 2183 G 50 4177 * 4342 6265 * 230 * 5704 * * * 6582 * * * * * * * * 50 11 * 7027 * * 929 1075 5594 0 1500 V 51 3768 * * 6263 4647 4658 4801 * 2720 5719 6349 5511 4199 3143 2654 3190 3063 5134 * 6804 51 36 5346 * 2910 206 * 0 5596 1587 1466 P 52 4250 * 6263 5922 * * * * 5361 6656 * * 245 5701 * * 5593 * * * 52 22 * 6075 * * * 0 5596 0 1466 F 53 5634 7158 5201 5654 2887 5143 6444 3728 5514 3367 6445 6163 * 6179 * * 2617 4441 4680 1893 53 68 5323 5555 568 1620 * 0 5599 1605 2110 V 54 6809 * 6243 * 6413 * * 2482 5613 1348 * * * * * * 5224 1526 * * 54 84 4148 * 3794 108 967 1034 5581 2656 2473 D 55 3372 * 2539 1962 * 5190 * * 2836 6279 * 3975 3813 5488 4914 3916 5195 6553 * * 55 61 4586 * 1644 556 569 1618 5589 2103 1903 G 56 4657 * 4566 4929 * 1618 * * 3372 4078 * 2069 6663 5909 5348 5292 4599 4952 * 6027 56 42 5120 * 2424 298 * 0 5596 1922 1000 G 57 1095 * * * 5488 4405 * 4063 * 6302 * * * * 4876 4000 6887 2092 * 4312 57 0 * * * * 0 * 5596 0 1000 V 58 4240 * * 6282 6545 6579 * 4594 1969 4324 6427 * * 4459 2488 3090 2818 4235 * 5744 58 31 5535 * 664 1438 * * 5593 1664 0 I 59 4606 5416 * * 4472 * * 2416 * 5367 * * * * * * * 586 * 6319 59 28 5712 * 1000 1000 * * 5593 1000 0 K 60 6522 * 4613 2228 * * 4407 4397 2427 4884 6949 6592 * 5654 4054 3955 2620 3718 * 5739 60 0 * * * * * * 5593 0 0 A 61 641 3685 * * * 2824 * * * 3602 * * * * * 6598 6745 4732 * * 61 35 5380 * 1000 1000 * * 5593 1203 0 E 62 * * 4833 2004 * * * 4155 2738 6375 * * * 4984 3670 5189 1980 3232 * * 62 0 * * * * * * 5593 0 0 V 63 * 6520 6406 * 6287 * * 1694 * 4862 * * 6282 * * * * 742 * 6575 63 0 * * * * * * 5593 0 0 V 64 6338 * * 3230 * 6579 * 2825 4883 1498 5765 * * 6309 * 6406 4852 1921 * * 64 0 * * * * * * 5593 0 0 A 65 3959 6371 4353 1418 * 2752 5161 * 3102 7172 * 4432 6196 4117 4770 4435 * * * * 65 11 7043 * 0 * * * 5593 1000 0 H 66 7060 6579 4409 3824 4997 * 1340 5006 3477 * 5743 4381 5776 2852 * 6427 4365 4893 * * 66 24 5915 * 0 * * * 5593 1587 0 G 67 3663 5936 4384 4485 3068 3158 * 3916 3592 3536 6598 7361 6374 * 5434 5339 2649 3341 * 6515 67 10 7172 * 2000 415 * * 5593 1000 0 R 68 * * 5610 6308 5936 * * 6455 1550 3673 6375 6710 * 5245 1352 4418 4933 * * * 68 35 * 5390 * * * * 5593 0 0 G 69 3695 6011 2706 3079 * 1226 5513 * 5464 * 6977 7139 * 6756 6183 4143 4153 * * 6293 69 15 6551 * 2000 415 957 1044 5573 1000 1750 E 70 4134 * 3097 3176 * 6024 4958 * 2371 * 6107 4414 1901 6591 3312 5482 * 6364 * * 70 0 * * * * * 0 5582 0 1000 K 71 * * * 5065 6194 * * 6196 381 4069 4780 6983 5106 * 6831 * 5296 * * 6985 71 0 * * * * * 0 5582 0 1000 V 72 * 5786 * 4011 * * * 1581 4768 3597 5101 * * 4308 4610 * 4888 1838 * 4952 72 0 * * * * 0 * 5582 0 1000 K 73 5778 * * 7043 7211 * 6306 1914 3525 2829 * 6782 6110 5712 3060 5990 3368 2776 * 4621 73 0 * * * * * * 5593 0 0 I 74 3748 6301 * * * 5416 4685 2017 3978 5693 5356 6511 * * 5363 4210 4196 1549 6535 * 74 17 6436 * 2322 322 * * 5589 1000 0 V 75 5948 * * 3733 1385 4696 5186 3808 5163 3769 * * * 5152 6278 * * 3464 * 2687 75 0 * * * * * * 5589 0 0 K 76 * * * * * * 4539 6276 546 * * * * 5046 2796 * 5740 4108 * 6927 76 13 * 6809 * * * * 5589 0 0 F 77 5914 * * * 2078 * 3829 5927 1900 6364 3231 * * 6092 7048 6297 3990 * * 2512 77 0 * * * * 0 * 5592 0 1000 R 78 * * * 6734 5933 * 6535 4726 886 5229 * 6811 * 6297 1666 6702 6436 * * * 78 0 * * * * * * 5589 0 0 R 79 4529 * * 6809 * 6734 * * 3525 * * 4749 2785 4935 930 3162 * * * * 79 0 * * * * * * 5589 0 0 R 80 * * * * * * 5766 * 1672 * * * * 5772 678 5354 * * * * 80 0 * * * * * * 5589 0 0 K 81 6212 5695 * 6809 * * 5196 * 522 * * 6210 * 3551 4008 * 4042 6278 * * 81 24 * 5948 * * * * 5589 0 0 H 82 5037 * 4311 * * 2110 2863 * 3702 * * 2271 * 4497 2427 5279 6639 * * * 82 0 * * * * 0 * 5557 0 1000 Y 83 * * * 6212 4183 6436 3360 6007 * * 6098 7205 * 6812 4436 2419 3562 5524 5315 1279 83 0 * * * * * * 5589 0 0 R 84 4677 6812 6278 5265 * * 3251 * 1896 5772 4497 * * 3924 1652 5545 6809 4004 * * 84 0 * * * * * * 5589 0 0 K 85 * * * * 5766 5933 * * 1427 4734 * * * 6437 1020 * 5681 4980 * * 85 0 * * * * * * 5589 0 0 Q 86 6297 * * 5677 4300 * 4405 5103 1554 3602 6192 7218 * 4576 3054 5249 2574 6278 * 5170 86 0 * * * * * * 5589 0 0 Q 87 4265 * * 6436 4914 * * 3309 2693 4411 6168 3156 * 3261 2810 * 3795 4445 4634 3849 87 0 * * * * * * 5589 0 0 G 88 * * * 5521 6511 436 * * 3964 6436 * 6276 * 5695 6007 4518 4974 6535 5766 * 88 0 * * * * * * 5589 0 0 H 89 * 5933 * 6101 4868 * 538 * 5766 * * * * * 6291 3525 6432 4146 * 4056 89 0 * * * * * * 5589 0 0 R 90 * * * 5695 * * * * 2975 * * * * 5725 335 5766 6369 * * 6432 90 0 * * * * * * 5589 0 0 Q 91 6297 * 4356 5317 * 5065 3309 5389 * 6436 * * 5134 642 5224 4659 6432 * * * 91 0 * * * * * * 5589 0 0 W 92 5858 6808 3582 2992 4318 4305 5207 * 2860 4815 6436 4580 3355 4294 3637 4369 6571 5146 3832 5392 92 0 * * * * * * 5589 0 0 F 93 5766 6811 * * 3135 7348 6369 4081 * 1927 3889 6900 * 5695 6511 * * 3690 6616 1622 93 0 * * * * * * 5589 0 0 T 94 * * * * * * 6591 5157 * 5736 * * * 5244 * 3450 347 5288 * 6277 94 0 * * * * * * 5589 0 0 D 95 5088 * 5606 3859 * 5504 * 4349 2706 4657 5414 6702 6192 5106 1745 5712 3944 2750 * 6571 95 0 * * * * * * 5589 0 0 V 96 * * * * 3910 * * 1526 * 1578 5068 * * * * * * 2175 * * 96 0 * * * * * * 5589 0 0 K 97 5933 * * 4899 7080 * * * 1782 3410 5611 * * 4953 1344 4898 4411 5617 * 6593 97 0 * * * * * * 5589 0 0 I 98 * * * * * * * 704 * * * * * * * * * 1373 * * 98 0 * * * * * * 5589 0 0 T 99 5927 * 2940 3136 * 4725 * 4087 3187 5164 4778 3476 * 6710 6883 3797 2339 3455 * * 99 0 * * * * * * 5573 0 0 G 100 5763 * 2252 2269 * 3616 6339 * 3445 * * 4406 * * 6623 1802 5571 * * 6245 100 0 * * * * * * 5568 0 0 I 101 * * * * * * * 477 * 3282 * * * * * * * 2484 * * 101 0 * * * * * * 5527 0 0 S 102 2737 * * 5128 * 4504 * 4028 * 4818 * 2354 * 5830 5527 1819 2816 5622 * * 102 0 * * * * * * 4752 0 0 A 103 388 * * * * * * * * * * * * * * 2084 * * * * 103 0 * * 0 * * * 4021 0 0 //