41 c3civA_ Probab=99.87   E-value=1.6e-23  Score=182.83  Aligned_columns=247  Identities=16%

Q ss_pred             EEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCC---------------------HHHHHHHHHCCCE
Q ss_conf             9975410476775564479999999999999829859995588885---------------------8998889773829
Q batch____       351 LIRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNH---------------------PLWYTLCDRYGLY  409 (1024)
Q Consensus       351 ~lrGvn~h~~~p~~G~~~~~e~~~~di~lmK~~n~N~vR~sHyP~~---------------------~~fydlcDe~Gl~  409 (1024)
                      |+||+|.+.+.+....  +....+++|.+||++|+|+||+.||+..                     ..+.++|++.||+
T Consensus         8 ~i~G~~~~~~~~~~~~--~~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~A~~~Gl~   85 (316)
T c3civA_           8 FIRGMTFGFVGQHGTW--GTDEARASMRALAEQPFNWVTLAFAGLMEHPGDPAIAYGPPVTVSDDEIASMAELAHALGLK   85 (316)
T ss_dssp             CEEEEEESTTCBTTGG--GSHHHHHHHHHHHHSSCSEEEEEEEEEESSTTCCCCBCSTTTBCCHHHHHHHHHHHHHTTCE
T ss_pred             CCCCEEECCCCCCCCC--CCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCE
T ss_conf             2156341441477888--83689999999998399899982324777767765444767767978999999999868987


Q ss_pred             EEEECCCCCCCCCCCC--CCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC-----------CCHHHHHHHHHHH
Q ss_conf             9972664324544546--65689999999999999999985799569999467788-----------7608899999999
Q batch____       410 VVDEANIETHGMVPMN--RLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNES-----------GHGANHDALYRWI  476 (1024)
Q Consensus       410 V~dEa~~e~hg~~~~~--~~~~~p~~~~~~~~~~~~mV~RdrNHPSIi~WSlGNEs-----------~~g~n~~~~~~~~  476 (1024)
                      |+-+..+..+.-.+..  .+..++.+.....++..++++|.+|||++++|.+|||.           .....+.++++.+
T Consensus        86 Vil~~h~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~nE~~~~gne~~~~~~~~~~~~~~~~~i  165 (316)
T c3civA_          86 VCLKPTVNCRDGTWRGEIRFEKEHGPDLESWEAWFGSYSDMMAHYAHVAKRTGCEMFCVGCEMTTAEPHEAMWRETIARV  165 (316)
T ss_dssp             EEEEEEEEETTCCCGGGCCCSBSCCTTSSBHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEESCTTTTTCHHHHHHHHHHH
T ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf             99972358888765556676786012557699999999999987999987419985850677776001467899999999


Q ss_pred             HHHCCCCEEECCCCCCC-----CCEEEEEECC-CCCHHHHHHCCCCCCCCCHHHHCCCCCCCCEEEEEECCCCCCCCCC-
Q ss_conf             98589971773888877-----5402077087-7897772110033322100110046789738996311227677789-
Q batch____       477 KSVDPSRPVQYEGGGAD-----TTATDIICPM-YARVDEDQPFPAVPKWSIKKWLSLPGETRPLILCEYAHAMGNSLGG-  549 (1024)
Q Consensus       477 k~~DptRpv~ye~~~~~-----~~~~Dv~s~m-Y~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~i~~EY~Hamgn~~G~-  549 (1024)
                      |+.||+++++.......     ....|+++.+ |+..................+      .||+++|||++.+.++.+. 
T Consensus       166 r~~dp~~~~~~~~~~~~~~~~~~~~~D~ig~~~Y~~~~~~~~~~~~~~~~~~~~------~kPi~i~E~G~~~~~g~~~~  239 (316)
T c3civA_         166 RTEYDGLVTYNCNHGREEHVRFWDAVDLISSSAYYPIDRWRDRVPVLREVAEAH------EKPLFFMEVGCPSRSGSGAC  239 (316)
T ss_dssp             HHHCCSEEEEEEETTCTTTCSCGGGSSEEEEECCCCGGGHHHHHHHHHHHHHHH------TCCEEEEEECCCSBTTGGGS
T ss_pred             HHHCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCC------CCCEEEEECCCCCCCCCCCC
T ss_conf             974699779944688633345333457676314777430688999865465305------88579970145223577667


Q ss_pred             ------------------HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCC
Q ss_conf             ------------------89999999874221021223236756316488844467733667899875550126138788
Q batch____       550 ------------------FAKYWQAFRQYPRLQGGFVWDWVDQSLIKYDENGNPWSAYGGDFGDTPNDRQFCMNGLVFAD  611 (1024)
Q Consensus       550 ------------------l~~yw~~~~~~~~~~GgfIW~~~D~~~~~~~~~g~~~~~yGgDfgd~p~d~nf~~~Giv~~d  611 (1024)
                                        ++.++..+.+.|.+.|.|.|+|.++....               .+.+.|..||..|     
T Consensus       240 ~~~~~~~~~~~~~~Qa~~~~~~~~~~~~~~~~~G~~~W~w~~~~~~~---------------~~~~~d~~f~~~~-----  299 (316)
T c3civA_         240 PWDYRHPGAVCLDEQARFYEAMFAAMPDEPWFKGYMLWEWPWKLYPR---------------EAASEDGSYCIYG-----  299 (316)
T ss_dssp             TTCTTCCCCBCHHHHHHHHHHHHHHSCCCTTEEEEEEEEECSSCCCG---------------GGGGGCCSSCCTT-----
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCC---------------CCCCCCCCCEECC-----
T ss_conf             65766644569899999999999998537780259998616878873---------------3256488520776-----


Q ss_pred             CCCCHHHHHHHHHHCCE
Q ss_conf             78278899988860475
Q batch____       612 RTPHPALTEAKHQQQFF  628 (1024)
Q Consensus       612 r~pkp~~~e~K~~~~Pv  628 (1024)
                         ||+...+|+.|+.+
T Consensus       300 ---Kpa~~v~~~~~~~~  313 (316)
T c3civA_         300 ---KPAEDVVARAFSAI  313 (316)
T ss_dssp             ---SHHHHHHHHHHHHH
T ss_pred             ---CCHHHHHHHHHHHH
T ss_conf             ---21899999999887