BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (229 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P06626 Protein traJ n=12 Tax=Escherichia RepID=TRAJ1_ECOLI 474 e-132 UniRef50_Q8L368 TraJ n=1 Tax=Salmonella enterica subsp. enterica... 206 6e-52 UniRef50_A6TIT1 Expression of the tra operon n=1 Tax=Klebsiella ... 69 1e-10 UniRef50_A6TIF8 Expression of the tra operon n=1 Tax=Klebsiella ... 64 5e-09 UniRef50_Q00738 Protein traJ n=3 Tax=Escherichia coli RepID=TRAJ... 58 3e-07 UniRef50_P13972 Protein traJ n=8 Tax=root RepID=TRAJ4_ECOLX 57 5e-07 UniRef50_C8T424 Putative uncharacterized protein n=1 Tax=Klebsie... 52 2e-05 UniRef50_Q988F5 Two component system response regulator n=1 Tax=... 42 0.018 >UniRef50_P06626 Protein traJ n=12 Tax=Escherichia RepID=TRAJ1_ECOLI Length = 229 Score = 474 bits (1220), Expect = e-132, Method: Compositional matrix adjust. Identities = 229/229 (100%), Positives = 229/229 (100%) Query: 1 MYPMDRIQQKHARQIDLLENLTAVIQDYPNPACIRDETGKFIFCNTLFHESFLTQDQSAE 60 MYPMDRIQQKHARQIDLLENLTAVIQDYPNPACIRDETGKFIFCNTLFHESFLTQDQSAE Sbjct: 1 MYPMDRIQQKHARQIDLLENLTAVIQDYPNPACIRDETGKFIFCNTLFHESFLTQDQSAE 60 Query: 61 KWLLSQRDFCELISVTEMEAYRNEHTHLNLVEDVFIQNRFWTISVQSFLNGHRNIILWQF 120 KWLLSQRDFCELISVTEMEAYRNEHTHLNLVEDVFIQNRFWTISVQSFLNGHRNIILWQF Sbjct: 61 KWLLSQRDFCELISVTEMEAYRNEHTHLNLVEDVFIQNRFWTISVQSFLNGHRNIILWQF 120 Query: 121 YDAAHVRHKDSYNQKTIVSDDIRNIIRRMSDDSSVSSYVNDVFYLYSTGISHNAIARILN 180 YDAAHVRHKDSYNQKTIVSDDIRNIIRRMSDDSSVSSYVNDVFYLYSTGISHNAIARILN Sbjct: 121 YDAAHVRHKDSYNQKTIVSDDIRNIIRRMSDDSSVSSYVNDVFYLYSTGISHNAIARILN 180 Query: 181 ISISTSKKHASLICDYFSVSNKDELIILLYNKKFIYYLYEKAMCIINTR 229 ISISTSKKHASLICDYFSVSNKDELIILLYNKKFIYYLYEKAMCIINTR Sbjct: 181 ISISTSKKHASLICDYFSVSNKDELIILLYNKKFIYYLYEKAMCIINTR 229 >UniRef50_Q8L368 TraJ n=1 Tax=Salmonella enterica subsp. enterica serovar Pullorum RepID=Q8L368_SALPU Length = 160 Score = 206 bits (523), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 96/146 (65%), Positives = 114/146 (78%) Query: 1 MYPMDRIQQKHARQIDLLENLTAVIQDYPNPACIRDETGKFIFCNTLFHESFLTQDQSAE 60 MYPMDRIQQ H RQI+LLENL VIQ + NPACIR+ +GKF+FCN LF E FL + SAE Sbjct: 1 MYPMDRIQQGHDRQINLLENLITVIQHFHNPACIRNVSGKFLFCNALFRELFLKETYSAE 60 Query: 61 KWLLSQRDFCELISVTEMEAYRNEHTHLNLVEDVFIQNRFWTISVQSFLNGHRNIILWQF 120 KWLLSQ DF ELIS+TEME YRNEHTHLNLVED+FIQNRFWTISVQ F + I++W+F Sbjct: 61 KWLLSQPDFSELISITEMEVYRNEHTHLNLVEDIFIQNRFWTISVQFFYSKPDGIVVWEF 120 Query: 121 YDAAHVRHKDSYNQKTIVSDDIRNII 146 +DA HVRH ++Y + DI+ +I Sbjct: 121 FDATHVRHTNNYKPRFSGDYDIKKLI 146 >UniRef50_A6TIT1 Expression of the tra operon n=1 Tax=Klebsiella pneumoniae subsp. pneumoniae MGH 78578 RepID=A6TIT1_KLEP7 Length = 228 Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 54/223 (24%), Positives = 102/223 (45%), Gaps = 32/223 (14%) Query: 1 MYPMDRIQQKHARQIDLLENLTAVIQDYPNPACIRDETGKFIFCNTLFHESFLTQDQSAE 60 MYPMDR ++ RQ L +L A+I Y P CI +++G+F N+ F F QS Sbjct: 1 MYPMDRNEKDTCRQ-SLASSLEALIMHYSFPVCIHNQSGEFPAFNSAFLYEFGGALQSER 59 Query: 61 KW--LLSQRDFCELISVTEMEAY-RNEHTHLNLVEDVFIQNRFWTISVQSFLNGHRNIIL 117 W L+ F + + E+E + E ++ ++ ++I + + ++ F++ L Sbjct: 60 SWEELIGTDTF---LGLRELELLIQIEQSNFHIERCIYINGKQFDFMIEEFVSDGAVHFL 116 Query: 118 WQFYDAAHVRHKDSYNQKTIVSDDIRNIIRRMSDDSSVSSYVN----------DVFYLYS 167 W+F A S+ I+ I R + + V +++ D F Y+ Sbjct: 117 WKFGRA---------------SNSIKRITRSLPLHADVVNFMRAVKRLDKSEYDFFGFYA 161 Query: 168 TGISHNAIARILNISISTSKKHASLICDYFSVSNKDELIILLY 210 G SH + + L + +S+ +S I ++S++D+ I+L+ Sbjct: 162 GGASHKIMGQFLGLENGSSRNKSSQILTKLNISSRDDAFIVLH 204 >UniRef50_A6TIF8 Expression of the tra operon n=1 Tax=Klebsiella pneumoniae subsp. pneumoniae MGH 78578 RepID=A6TIF8_KLEP7 Length = 228 Score = 63.5 bits (153), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 53/231 (22%), Positives = 97/231 (41%), Gaps = 15/231 (6%) Query: 4 MDRIQQKHARQIDLLENLTAVIQDYPNPACIRDETGKFIFCNTLFHESFLTQDQSAEKWL 63 MDRI+ + Q+D + + +PACIR G F N F +FL + + W Sbjct: 1 MDRIENTNCSQLDFFREMQLTVNLSSHPACIRLRDGSFSHFNHSFATTFL-HNINVNIWF 59 Query: 64 LSQRDFCEL-ISVTEMEAYRNEHTHLNLVEDVFIQNRFWTISVQSFLNGHRNIILWQFYD 122 L +S + E Y + L + E++ I W ++ LW+F Sbjct: 60 NRLEISSSLRLSALDAEVYSGDRKML-IEENLPINGNRWDFIIERMSFDGTEFTLWKF-- 116 Query: 123 AAHVRHKDSYNQKTIVSDDIRNIIRRMSDDSSVSSYVNDV----FYLYSTGISHNAIARI 178 H++ ++S I+++++ + ++ DV LYS G SHN I+ + Sbjct: 117 -CHLQRGG-----FLLSPVRSGFIKKLNEFKNALGFLTDVQIETLALYSFGASHNQISEV 170 Query: 179 LNISISTSKKHASLICDYFSVSNKDELIILLYNKKFIYYLYEKAMCIINTR 229 LNI++ TSK + I + ++E+ L+ + + +I +R Sbjct: 171 LNIAVGTSKNRVNRILAALPIRTREEVFYFLFASGMAFSFCKVVTELIGSR 221 >UniRef50_Q00738 Protein traJ n=3 Tax=Escherichia coli RepID=TRAJ9_ECOLX Length = 215 Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 57/228 (25%), Positives = 100/228 (43%), Gaps = 15/228 (6%) Query: 1 MYPMDRIQQKHARQIDLLENLTAVIQDYPNPACIRDETGKFIFCNTLFHESFLTQDQSAE 60 M MDR ++ Q+ +L I P C+R E G FI N F + + S + Sbjct: 1 MCAMDRRERALISQLHFTHSLGEAISFLKYPVCVRFEDGSFIKENNCFEKLIRSSFNSCD 60 Query: 61 KWLLSQRDFCEL-ISVTEMEAYRNEHTHLNLVEDVFIQNRFWTISVQSFLNGHRNIILWQ 119 +W S + C+L +S E+E+ + + +N D+ + N W++ ++S + +W+ Sbjct: 61 EWFDSLKLECKLQLSRAEIESCSSIYG-VNCNNDILLNNVLWSVIIESVITPCGYFFIWR 119 Query: 120 FYDAAHVRHKDSYNQKTIVSDDIRNIIRRMSDDSSVSSYVNDVFYLYSTGISHNAIARIL 179 F A+ N + V N + SD+ YV YL G SH+ + + Sbjct: 120 FIWVAND------NLSSFVVSKYSNELIVPSDE-----YVGIEPYL--IGFSHHYSSAKM 166 Query: 180 NISISTSKKHASLICDYFSVSNKDELIILLYNKKFIYYLYEKAMCIIN 227 NI++S SKK + + S++D + + + I LY K I+ Sbjct: 167 NITVSKSKKKTMKLFKRYGFSSRDLWLDEMIRTEKILPLYAKVKEILG 214 >UniRef50_P13972 Protein traJ n=8 Tax=root RepID=TRAJ4_ECOLX Length = 223 Score = 57.0 bits (136), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 51/215 (23%), Positives = 96/215 (44%), Gaps = 11/215 (5%) Query: 1 MYPMDRIQQKHARQIDLLENLTAVIQDYPNPACIRDETGKFIFCNTLFHESFLTQDQSAE 60 MYP D Q RQI L + + + PAC+R+ G N F + F+ E Sbjct: 1 MYPTDPRQLNTERQIYLDKQF--FVDVFSIPACVRNTNGDLSATNEKFSKEFIGSLDIKE 58 Query: 61 KWLLSQRDFCELISVTEMEAYRNEHTHLNLVEDVFIQNRFWTISVQSFLNGHRNIILWQF 120 W S + E + + +N ++ V I ++ W + + G +LW F Sbjct: 59 -WFYSLPVQVATSFLREELDAMSLPSSMNKIQSVAIGDKLWLVQFIPLIYGEVVNVLWLF 117 Query: 121 Y-DAAHVRHKDSYNQKTIVSDDIRNIIRRMSDDSSVSSYVN-DVFYLYSTGISHNAIARI 178 + ++V +T +++D RM + + S+ + VF LYS G H +IA + Sbjct: 118 FCKNSNVIVDYCRGLRTNITND------RMLEFKNKSTEIQWKVFILYSFGFCHESIASL 171 Query: 179 LNISISTSKKHASLICDYFSVSNKDELIILLYNKK 213 L+I+ +S+ S + +F + +K +L+++ + + Sbjct: 172 LSITNGSSRNAISEVYKFFGIHSKHDLLMIFHTSR 206 >UniRef50_C8T424 Putative uncharacterized protein n=1 Tax=Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884 RepID=C8T424_KLEPR Length = 219 Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 84/186 (45%), Gaps = 15/186 (8%) Query: 31 PACIRDETGKFIFCNTLFHESFLTQDQSAEKWLLSQRD--FCELISVTEMEAYRNEHTHL 88 PA IRD G I + F + FLT + S F +L ++E ++E Sbjct: 11 PAFIRDSRGDVIHTSPTFDKVFLTSGGAGTFDTPSAPGNWFLDLSLEVKLELMQSELKSF 70 Query: 89 N-----LVEDVFIQNRFWTISVQSFLNGHRNIILWQFYDAAHVRHKDS--YNQKTIVSDD 141 + LV+ ++ + WT+ +++F N W F + S YN+ S Sbjct: 71 SEGSAVLVKKNWLVDSLWTVFIETFTINEENYSKWVFIKEGDQIPQSSREYNE---FSKK 127 Query: 142 IRNIIRRMSDDSSVSSYVNDVFYLYSTGISHNAIARILNISISTSKKHASLICDYFSVSN 201 ++ I R+ S+ S + +F LY+ G SH +I+RI+ I + TSK S I + + Sbjct: 128 MQGYIERI-QRSAKSDWA--IFNLYAVGFSHASISRIIGIEVQTSKNTVSKIKKELNFDS 184 Query: 202 KDELII 207 +D +I+ Sbjct: 185 RDYIIL 190 >UniRef50_Q988F5 Two component system response regulator n=1 Tax=Mesorhizobium loti RepID=Q988F5_RHILO Length = 225 Score = 42.0 bits (97), Expect = 0.018, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 3/70 (4%) Query: 143 RNIIRRM---SDDSSVSSYVNDVFYLYSTGISHNAIARILNISISTSKKHASLICDYFSV 199 RN IR+ SD ++S DV L + G S+ IAR L+I+ +T+K HA+ I V Sbjct: 147 RNPIRQRVGSSDLGRLTSRQRDVLKLMAEGYSNKEIARNLDIAEATTKIHAAAILRELGV 206 Query: 200 SNKDELIILL 209 N+ E +LL Sbjct: 207 RNRTEAAVLL 216 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P06626 Protein traJ n=12 Tax=Escherichia RepID=TRAJ1_ECOLI 274 2e-72 UniRef50_Q00738 Protein traJ n=3 Tax=Escherichia coli RepID=TRAJ... 207 3e-52 UniRef50_A6TIF8 Expression of the tra operon n=1 Tax=Klebsiella ... 207 3e-52 UniRef50_P13972 Protein traJ n=8 Tax=root RepID=TRAJ4_ECOLX 199 7e-50 UniRef50_A6TIT1 Expression of the tra operon n=1 Tax=Klebsiella ... 192 6e-48 UniRef50_Q8L368 TraJ n=1 Tax=Salmonella enterica subsp. enterica... 174 2e-42 UniRef50_C8T424 Putative uncharacterized protein n=1 Tax=Klebsie... 159 4e-38 Sequences not found previously or not previously below threshold: UniRef50_Q46713 TraJ protein (Fragment) n=1 Tax=Plasmid R100 Rep... 72 2e-11 UniRef50_P05837 Protein traJ n=21 Tax=Enterobacteriaceae RepID=T... 57 6e-07 UniRef50_P33785 Protein traJ (Fragment) n=4 Tax=Enterobacteriace... 54 4e-06 UniRef50_C8WM28 Transcriptional regulator, LuxR family n=1 Tax=E... 43 0.008 UniRef50_Q4ZV39 Regulatory protein, LuxR:Response regulator rece... 42 0.019 UniRef50_C1BAW6 Putative LuxR family transcriptional regulator n... 42 0.020 UniRef50_C7ML75 Response regulator containing a CheY-like receiv... 41 0.034 UniRef50_Q5LQW4 DNA-binding response regulator, LuxR family n=2 ... 41 0.038 UniRef50_B0C756 Two-component transcriptional regulator, LuxR fa... 41 0.040 UniRef50_C6DKK0 Two component transcriptional regulator, LuxR fa... 40 0.056 UniRef50_A7HPF0 Response regulator receiver protein n=1 Tax=Parv... 40 0.066 UniRef50_Q2SBZ5 Sensor protein n=1 Tax=Hahella chejuensis KCTC 2... 39 0.094 >UniRef50_P06626 Protein traJ n=12 Tax=Escherichia RepID=TRAJ1_ECOLI Length = 229 Score = 274 bits (700), Expect = 2e-72, Method: Composition-based stats. Identities = 229/229 (100%), Positives = 229/229 (100%) Query: 1 MYPMDRIQQKHARQIDLLENLTAVIQDYPNPACIRDETGKFIFCNTLFHESFLTQDQSAE 60 MYPMDRIQQKHARQIDLLENLTAVIQDYPNPACIRDETGKFIFCNTLFHESFLTQDQSAE Sbjct: 1 MYPMDRIQQKHARQIDLLENLTAVIQDYPNPACIRDETGKFIFCNTLFHESFLTQDQSAE 60 Query: 61 KWLLSQRDFCELISVTEMEAYRNEHTHLNLVEDVFIQNRFWTISVQSFLNGHRNIILWQF 120 KWLLSQRDFCELISVTEMEAYRNEHTHLNLVEDVFIQNRFWTISVQSFLNGHRNIILWQF Sbjct: 61 KWLLSQRDFCELISVTEMEAYRNEHTHLNLVEDVFIQNRFWTISVQSFLNGHRNIILWQF 120 Query: 121 YDAAHVRHKDSYNQKTIVSDDIRNIIRRMSDDSSVSSYVNDVFYLYSTGISHNAIARILN 180 YDAAHVRHKDSYNQKTIVSDDIRNIIRRMSDDSSVSSYVNDVFYLYSTGISHNAIARILN Sbjct: 121 YDAAHVRHKDSYNQKTIVSDDIRNIIRRMSDDSSVSSYVNDVFYLYSTGISHNAIARILN 180 Query: 181 ISISTSKKHASLICDYFSVSNKDELIILLYNKKFIYYLYEKAMCIINTR 229 ISISTSKKHASLICDYFSVSNKDELIILLYNKKFIYYLYEKAMCIINTR Sbjct: 181 ISISTSKKHASLICDYFSVSNKDELIILLYNKKFIYYLYEKAMCIINTR 229 >UniRef50_Q00738 Protein traJ n=3 Tax=Escherichia coli RepID=TRAJ9_ECOLX Length = 215 Score = 207 bits (526), Expect = 3e-52, Method: Composition-based stats. Identities = 57/228 (25%), Positives = 100/228 (43%), Gaps = 15/228 (6%) Query: 1 MYPMDRIQQKHARQIDLLENLTAVIQDYPNPACIRDETGKFIFCNTLFHESFLTQDQSAE 60 M MDR ++ Q+ +L I P C+R E G FI N F + + S + Sbjct: 1 MCAMDRRERALISQLHFTHSLGEAISFLKYPVCVRFEDGSFIKENNCFEKLIRSSFNSCD 60 Query: 61 KWLLSQRDFCEL-ISVTEMEAYRNEHTHLNLVEDVFIQNRFWTISVQSFLNGHRNIILWQ 119 +W S + C+L +S E+E+ + + +N D+ + N W++ ++S + +W+ Sbjct: 61 EWFDSLKLECKLQLSRAEIESCSSIYG-VNCNNDILLNNVLWSVIIESVITPCGYFFIWR 119 Query: 120 FYDAAHVRHKDSYNQKTIVSDDIRNIIRRMSDDSSVSSYVNDVFYLYSTGISHNAIARIL 179 F A+ N + V N + SD+ YV YL G SH+ + + Sbjct: 120 FIWVAND------NLSSFVVSKYSNELIVPSDE-----YVGIEPYL--IGFSHHYSSAKM 166 Query: 180 NISISTSKKHASLICDYFSVSNKDELIILLYNKKFIYYLYEKAMCIIN 227 NI++S SKK + + S++D + + + I LY K I+ Sbjct: 167 NITVSKSKKKTMKLFKRYGFSSRDLWLDEMIRTEKILPLYAKVKEILG 214 >UniRef50_A6TIF8 Expression of the tra operon n=1 Tax=Klebsiella pneumoniae subsp. pneumoniae MGH 78578 RepID=A6TIF8_KLEP7 Length = 228 Score = 207 bits (526), Expect = 3e-52, Method: Composition-based stats. Identities = 53/231 (22%), Positives = 97/231 (41%), Gaps = 15/231 (6%) Query: 4 MDRIQQKHARQIDLLENLTAVIQDYPNPACIRDETGKFIFCNTLFHESFLTQDQSAEKWL 63 MDRI+ + Q+D + + +PACIR G F N F +FL + + W Sbjct: 1 MDRIENTNCSQLDFFREMQLTVNLSSHPACIRLRDGSFSHFNHSFATTFL-HNINVNIWF 59 Query: 64 LSQRDFCEL-ISVTEMEAYRNEHTHLNLVEDVFIQNRFWTISVQSFLNGHRNIILWQFYD 122 L +S + E Y + L + E++ I W ++ LW+F Sbjct: 60 NRLEISSSLRLSALDAEVYSGDRKML-IEENLPINGNRWDFIIERMSFDGTEFTLWKF-- 116 Query: 123 AAHVRHKDSYNQKTIVSDDIRNIIRRMSDDSSVSSYVNDV----FYLYSTGISHNAIARI 178 H++ ++S I+++++ + ++ DV LYS G SHN I+ + Sbjct: 117 -CHLQRGG-----FLLSPVRSGFIKKLNEFKNALGFLTDVQIETLALYSFGASHNQISEV 170 Query: 179 LNISISTSKKHASLICDYFSVSNKDELIILLYNKKFIYYLYEKAMCIINTR 229 LNI++ TSK + I + ++E+ L+ + + +I +R Sbjct: 171 LNIAVGTSKNRVNRILAALPIRTREEVFYFLFASGMAFSFCKVVTELIGSR 221 >UniRef50_P13972 Protein traJ n=8 Tax=root RepID=TRAJ4_ECOLX Length = 223 Score = 199 bits (505), Expect = 7e-50, Method: Composition-based stats. Identities = 52/228 (22%), Positives = 101/228 (44%), Gaps = 11/228 (4%) Query: 1 MYPMDRIQQKHARQIDLLENLTAVIQDYPNPACIRDETGKFIFCNTLFHESFLTQDQSAE 60 MYP D Q RQI L + + + PAC+R+ G N F + F+ E Sbjct: 1 MYPTDPRQLNTERQIYLDKQF--FVDVFSIPACVRNTNGDLSATNEKFSKEFIGSLDIKE 58 Query: 61 KWLLSQRDFCELISVTEMEAYRNEHTHLNLVEDVFIQNRFWTISVQSFLNGHRNIILWQF 120 W S + E + + +N ++ V I ++ W + + G +LW F Sbjct: 59 -WFYSLPVQVATSFLREELDAMSLPSSMNKIQSVAIGDKLWLVQFIPLIYGEVVNVLWLF 117 Query: 121 Y-DAAHVRHKDSYNQKTIVSDDIRNIIRRMSDDSSVSSYVN-DVFYLYSTGISHNAIARI 178 + ++V +T +++D RM + + S+ + VF LYS G H +IA + Sbjct: 118 FCKNSNVIVDYCRGLRTNITND------RMLEFKNKSTEIQWKVFILYSFGFCHESIASL 171 Query: 179 LNISISTSKKHASLICDYFSVSNKDELIILLYNKKFIYYLYEKAMCII 226 L+I+ +S+ S + +F + +K +L+++ + + +++ I+ Sbjct: 172 LSITNGSSRNAISEVYKFFGIHSKHDLLMIFHTSRMHSLFFDELFFIL 219 >UniRef50_A6TIT1 Expression of the tra operon n=1 Tax=Klebsiella pneumoniae subsp. pneumoniae MGH 78578 RepID=A6TIT1_KLEP7 Length = 228 Score = 192 bits (488), Expect = 6e-48, Method: Composition-based stats. Identities = 56/239 (23%), Positives = 108/239 (45%), Gaps = 32/239 (13%) Query: 1 MYPMDRIQQKHARQIDLLENLTAVIQDYPNPACIRDETGKFIFCNTLFHESFLTQDQSAE 60 MYPMDR ++ RQ L +L A+I Y P CI +++G+F N+ F F QS Sbjct: 1 MYPMDRNEKDTCRQ-SLASSLEALIMHYSFPVCIHNQSGEFPAFNSAFLYEFGGALQSER 59 Query: 61 KW--LLSQRDFCELISVTEMEAY-RNEHTHLNLVEDVFIQNRFWTISVQSFLNGHRNIIL 117 W L+ F + + E+E + E ++ ++ ++I + + ++ F++ L Sbjct: 60 SWEELIGTDTF---LGLRELELLIQIEQSNFHIERCIYINGKQFDFMIEEFVSDGAVHFL 116 Query: 118 WQFYDAAHVRHKDSYNQKTIVSDDIRNIIRRMSDDSSVSSYVN----------DVFYLYS 167 W+F A S+ I+ I R + + V +++ D F Y+ Sbjct: 117 WKFGRA---------------SNSIKRITRSLPLHADVVNFMRAVKRLDKSEYDFFGFYA 161 Query: 168 TGISHNAIARILNISISTSKKHASLICDYFSVSNKDELIILLYNKKFIYYLYEKAMCII 226 G SH + + L + +S+ +S I ++S++D+ I+L+ + + + + II Sbjct: 162 GGASHKIMGQFLGLENGSSRNKSSQILTKLNISSRDDAFIVLHLSELLEPVMKNVRDII 220 >UniRef50_Q8L368 TraJ n=1 Tax=Salmonella enterica subsp. enterica serovar Pullorum RepID=Q8L368_SALPU Length = 160 Score = 174 bits (441), Expect = 2e-42, Method: Composition-based stats. Identities = 96/149 (64%), Positives = 115/149 (77%) Query: 1 MYPMDRIQQKHARQIDLLENLTAVIQDYPNPACIRDETGKFIFCNTLFHESFLTQDQSAE 60 MYPMDRIQQ H RQI+LLENL VIQ + NPACIR+ +GKF+FCN LF E FL + SAE Sbjct: 1 MYPMDRIQQGHDRQINLLENLITVIQHFHNPACIRNVSGKFLFCNALFRELFLKETYSAE 60 Query: 61 KWLLSQRDFCELISVTEMEAYRNEHTHLNLVEDVFIQNRFWTISVQSFLNGHRNIILWQF 120 KWLLSQ DF ELIS+TEME YRNEHTHLNLVED+FIQNRFWTISVQ F + I++W+F Sbjct: 61 KWLLSQPDFSELISITEMEVYRNEHTHLNLVEDIFIQNRFWTISVQFFYSKPDGIVVWEF 120 Query: 121 YDAAHVRHKDSYNQKTIVSDDIRNIIRRM 149 +DA HVRH ++Y + DI+ +I + Sbjct: 121 FDATHVRHTNNYKPRFSGDYDIKKLIETI 149 >UniRef50_C8T424 Putative uncharacterized protein n=1 Tax=Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884 RepID=C8T424_KLEPR Length = 219 Score = 159 bits (403), Expect = 4e-38, Method: Composition-based stats. Identities = 47/194 (24%), Positives = 85/194 (43%), Gaps = 11/194 (5%) Query: 21 LTAVIQDYPNPACIRDETGKFIFCNTLFHESFLTQDQSAEKWLLSQRD--FCELISVTEM 78 + ++ PA IRD G I + F + FLT + S F +L ++ Sbjct: 1 MREMLNISSCPAFIRDSRGDVIHTSPTFDKVFLTSGGAGTFDTPSAPGNWFLDLSLEVKL 60 Query: 79 EAYRNEHTHLN-----LVEDVFIQNRFWTISVQSFLNGHRNIILWQFYDAAHVRHKDSYN 133 E ++E + LV+ ++ + WT+ +++F N W F + S Sbjct: 61 ELMQSELKSFSEGSAVLVKKNWLVDSLWTVFIETFTINEENYSKWVFIKEGDQIPQSSR- 119 Query: 134 QKTIVSDDIRNIIRRMSDDSSVSSYVNDVFYLYSTGISHNAIARILNISISTSKKHASLI 193 + S ++ I R+ S+ S + +F LY+ G SH +I+RI+ I + TSK S I Sbjct: 120 EYNEFSKKMQGYIERI-QRSAKSDWA--IFNLYAVGFSHASISRIIGIEVQTSKNTVSKI 176 Query: 194 CDYFSVSNKDELII 207 + ++D +I+ Sbjct: 177 KKELNFDSRDYIIL 190 >UniRef50_Q46713 TraJ protein (Fragment) n=1 Tax=Plasmid R100 RepID=Q46713_9ZZZZ Length = 60 Score = 71.8 bits (174), Expect = 2e-11, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 1 MYPMDRIQQKHARQIDLLENLTAVIQDYPNPACIRDETGKFIFCNTLFHESFLTQDQSAE 60 MYP D Q RQI L + + + PAC+R+ G FI N F + F+ + Sbjct: 1 MYPTDPRQLNTERQIYLDKQF--FVDVFSIPACVRNTNGDFIGYNEKFSKEFIGSLDIPQ 58 Query: 61 K 61 + Sbjct: 59 E 59 >UniRef50_P05837 Protein traJ n=21 Tax=Enterobacteriaceae RepID=TRAJ2_ECOLX Length = 228 Score = 56.7 bits (135), Expect = 6e-07, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 84/235 (35%), Gaps = 13/235 (5%) Query: 1 MYPMDRIQQKHARQI--DLLENLTAVIQDYPNPACIRDETGKFIFCNTLFHESFLTQDQS 58 M +DR ++ Q + N+ + ++ P P C+R++ K ++ N F E F +D+ Sbjct: 1 MCALDRRERPLNSQSVNKYILNVQNIYRNSPVPVCVRNKNRKILYANGAFIELFSREDKP 60 Query: 59 AE-KWLLSQRDFCELISVTEMEAYRNEHTHLNLVEDVFIQNRFWTISVQSFL-NGHRNII 116 + + + L S+ E+E H F + I +++ +++ Sbjct: 61 LSGESYIRLQVEIFLSSL-ELECQALGHGSAFCRRFNF-HGEIYQIRMENVSFYNDESVV 118 Query: 117 LWQFYDAAHVRHKDSYNQKTIVSDDIRNIIRRMSDDSSVSSYVNDVFYLYSTGISHNAIA 176 LWQ + + S N +++ + +S VF Y G+ H IA Sbjct: 119 LWQI----NPFPDYPF-FALNQSGSNTNTSDKLTIWNDLSPGTLVVFSFYMLGVGHATIA 173 Query: 177 RILNISISTSKKHASLICDYFS--VSNKDELIILLYNKKFIYYLYEKAMCIINTR 229 R L I+ S+ + + D + K I L + Sbjct: 174 RELGITDRASEDRIKPVKRKIKEFFEHFDLFRVSCIYKGEIDSLLSIIREFYGVK 228 >UniRef50_P33785 Protein traJ (Fragment) n=4 Tax=Enterobacteriaceae RepID=TRAJ7_ECOLX Length = 76 Score = 54.1 bits (128), Expect = 4e-06, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 4/76 (5%) Query: 1 MYPMDRIQQKHARQIDLLENLTAVIQDYPNPACIRDETGKFIFCNTLFHESFLTQDQSAE 60 M MD ++ RQ L +I P C+R E+GKFI N++F Q+ ++E Sbjct: 1 MCVMDTRERALIRQ----SGLPEIILSAKYPVCVRTESGKFIDSNSVFLHLIKCQNSNSE 56 Query: 61 KWLLSQRDFCELISVT 76 W +++ T Sbjct: 57 IWFSGIDIDTQILFHT 72 >UniRef50_C8WM28 Transcriptional regulator, LuxR family n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WM28_EGGLE Length = 493 Score = 42.9 bits (99), Expect = 0.008, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Query: 140 DDIRNIIRRMSDDSSVSSYVNDVFYLYSTGISHNAIARILNISISTSKKHASLICDYFSV 199 ++ R+++ ++ ++ ++ L + G S IA L IS +T++ H + + ++ Sbjct: 417 SEMLAYCRKLALENGLTPREAEILGLIAMGRSAKYIAEELTISHNTTRTHIKHVYEKLNI 476 Query: 200 SNKDELI-ILLYNKKFI 215 +K EL+ ++L+ I Sbjct: 477 HSKQELLDLVLFGSGLI 493 >UniRef50_Q4ZV39 Regulatory protein, LuxR:Response regulator receiver n=8 Tax=Pseudomonas RepID=Q4ZV39_PSEU2 Length = 222 Score = 41.7 bits (96), Expect = 0.019, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 34/80 (42%), Gaps = 8/80 (10%) Query: 131 SYNQKTIVSDDIRNIIRRMSDDSSVSSYV--------NDVFYLYSTGISHNAIARILNIS 182 + ++ + S ++RRM++ ++ + + V L + G S+ I L I+ Sbjct: 122 ARGEEALNSAVSARLLRRMTERNTSGAALPETLTPRERQVLGLVAGGFSNREIGEKLGIT 181 Query: 183 ISTSKKHASLICDYFSVSNK 202 T+K H + S++ Sbjct: 182 TGTAKAHVEKVIGKLGASDR 201 >UniRef50_C1BAW6 Putative LuxR family transcriptional regulator n=1 Tax=Rhodococcus opacus B4 RepID=C1BAW6_RHOOB Length = 372 Score = 41.7 bits (96), Expect = 0.020, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 27/56 (48%) Query: 160 NDVFYLYSTGISHNAIARILNISISTSKKHASLICDYFSVSNKDELIILLYNKKFI 215 +V L +TG ++ I+R L IS T K H I VS + E+ L N K + Sbjct: 314 REVLTLMATGATNATISRRLCISDGTVKSHVQRIFKKLGVSTRAEVAALCANTKTV 369 >UniRef50_C7ML75 Response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7ML75_CRYCD Length = 472 Score = 41.0 bits (94), Expect = 0.034, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 37/87 (42%), Gaps = 2/87 (2%) Query: 129 KDSYNQKTIVSDDIRNIIRRMSDDSSVSSYVNDVFYLYSTGISHNAIARILNISISTSKK 188 ++ S + I + +SD +++ N++ G S + IA L IS ST + Sbjct: 385 DNNQASSASFSRGLPRIPKSLSDK--LTNRENEILVFLGRGYSISYIAEKLFISESTVRT 442 Query: 189 HASLICDYFSVSNKDELIILLYNKKFI 215 H I + ++++L L+ + Sbjct: 443 HVKHIYAKLGIHSREDLFALIDQSAEV 469 >UniRef50_Q5LQW4 DNA-binding response regulator, LuxR family n=2 Tax=Rhodobacterales RepID=Q5LQW4_SILPO Length = 220 Score = 40.6 bits (93), Expect = 0.038, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 33/66 (50%) Query: 152 DSSVSSYVNDVFYLYSTGISHNAIARILNISISTSKKHASLICDYFSVSNKDELIILLYN 211 + +++ DVF L G+++ IAR+L++S ST K H S I +++ + I + Sbjct: 150 EQNLTPRQRDVFELMCKGLANKEIARLLDLSESTVKSHVSAIFKQIGTTSRSKTIAIFRQ 209 Query: 212 KKFIYY 217 + Sbjct: 210 EGVALP 215 >UniRef50_B0C756 Two-component transcriptional regulator, LuxR family n=1 Tax=Acaryochloris marina MBIC11017 RepID=B0C756_ACAM1 Length = 224 Score = 40.6 bits (93), Expect = 0.040, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 39/108 (36%), Gaps = 5/108 (4%) Query: 120 FYDAAHVRHKDSYNQKTIVSDDIRNIIRRMSD-----DSSVSSYVNDVFYLYSTGISHNA 174 F + HK + + +++ ++ DV L +TG S+ Sbjct: 117 FIQSIQQAHKGYLQLGPGLGQKLCQLLKTPVRPQIEAFEGITPREQDVLKLVATGASNRE 176 Query: 175 IARILNISISTSKKHASLICDYFSVSNKDELIILLYNKKFIYYLYEKA 222 I+ L+I+ T K H S I V ++ +L I + + A Sbjct: 177 ISETLHITEKTVKNHVSSILSRVGVQSRTQLAIWANSAGEETSSFAVA 224 >UniRef50_C6DKK0 Two component transcriptional regulator, LuxR family n=5 Tax=Pectobacterium RepID=C6DKK0_PECCP Length = 204 Score = 40.2 bits (92), Expect = 0.056, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 29/54 (53%) Query: 161 DVFYLYSTGISHNAIARILNISISTSKKHASLICDYFSVSNKDELIILLYNKKF 214 +V L ++G S+ I+R LNIS T K H I +V N+ + I+L ++ Sbjct: 150 EVLQLIASGASNKQISRTLNISAGTVKSHLESIFRRLNVRNRTQAAIVLLEEER 203 >UniRef50_A7HPF0 Response regulator receiver protein n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HPF0_PARL1 Length = 279 Score = 39.8 bits (91), Expect = 0.066, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 36/92 (39%) Query: 121 YDAAHVRHKDSYNQKTIVSDDIRNIIRRMSDDSSVSSYVNDVFYLYSTGISHNAIARILN 180 + A R + ++ I + R S+S +V L G+ ++ R+L Sbjct: 177 FWALLDRQDNEEQDRSFQLHQILSTAYRRFGGDSLSDREKEVTNLLLKGLPPKSVGRMLG 236 Query: 181 ISISTSKKHASLICDYFSVSNKDELIILLYNK 212 I+ T + H I V ++ EL+ L + Sbjct: 237 IAPGTVRNHIKRIYVKLDVRSQAELLALFFET 268 >UniRef50_Q2SBZ5 Sensor protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SBZ5_HAHCH Length = 391 Score = 39.4 bits (90), Expect = 0.094, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 37/94 (39%) Query: 24 VIQDYPNPACIRDETGKFIFCNTLFHESFLTQDQSAEKWLLSQRDFCELISVTEMEAYRN 83 + P PA + G+FI CNTLF F + ++ + + F +L E + Sbjct: 37 FLNALPYPAVVHSHQGEFIACNTLFLREFSSDPKTLARLTSHRDSFLQLFQPVEAKDAHL 96 Query: 84 EHTHLNLVEDVFIQNRFWTISVQSFLNGHRNIIL 117 + +L N F+ ++ F + +L Sbjct: 97 KGDAFSLQAHCGETNAFYALNSAPFYDAEGERLL 130 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P06626 Protein traJ n=12 Tax=Escherichia RepID=TRAJ1_ECOLI 253 3e-66 UniRef50_P13972 Protein traJ n=8 Tax=root RepID=TRAJ4_ECOLX 198 1e-49 UniRef50_Q00738 Protein traJ n=3 Tax=Escherichia coli RepID=TRAJ... 196 4e-49 UniRef50_A6TIF8 Expression of the tra operon n=1 Tax=Klebsiella ... 190 3e-47 UniRef50_A6TIT1 Expression of the tra operon n=1 Tax=Klebsiella ... 188 9e-47 UniRef50_P05837 Protein traJ n=21 Tax=Enterobacteriaceae RepID=T... 186 3e-46 UniRef50_C8T424 Putative uncharacterized protein n=1 Tax=Klebsie... 166 7e-40 UniRef50_Q8L368 TraJ n=1 Tax=Salmonella enterica subsp. enterica... 164 2e-39 UniRef50_P33785 Protein traJ (Fragment) n=4 Tax=Enterobacteriace... 81 3e-14 UniRef50_Q46713 TraJ protein (Fragment) n=1 Tax=Plasmid R100 Rep... 74 3e-12 Sequences not found previously or not previously below threshold: UniRef50_B5N6H7 Regulatory protein n=1 Tax=Salmonella enterica s... 71 4e-11 UniRef50_Q2SBZ5 Sensor protein n=1 Tax=Hahella chejuensis KCTC 2... 42 0.018 UniRef50_B8GUD1 Two component transcriptional regulator, LuxR fa... 41 0.023 UniRef50_Q4ZV39 Regulatory protein, LuxR:Response regulator rece... 41 0.030 UniRef50_C7ML75 Response regulator containing a CheY-like receiv... 41 0.034 UniRef50_Q1J2R1 Transcriptional regulator, LuxR family n=2 Tax=D... 41 0.035 UniRef50_B0C756 Two-component transcriptional regulator, LuxR fa... 41 0.048 UniRef50_Q21T21 Two component transcriptional regulator, LuxR fa... 40 0.055 UniRef50_C8WNS5 Transcriptional regulator, LuxR family n=1 Tax=E... 40 0.056 UniRef50_Q5LQW4 DNA-binding response regulator, LuxR family n=2 ... 40 0.056 UniRef50_D1GLT1 LuxR-family transcriptional regulator n=1 Tax=St... 40 0.070 UniRef50_A7HPF0 Response regulator receiver protein n=1 Tax=Parv... 40 0.072 UniRef50_C5C4U8 Two component transcriptional regulator, LuxR fa... 40 0.073 UniRef50_A4XXY6 Putative PAS/PAC sensor protein n=1 Tax=Pseudomo... 39 0.086 UniRef50_C8WGW7 Transcriptional regulator, LuxR family n=1 Tax=E... 39 0.087 UniRef50_Q1AVR6 Two component transcriptional regulator, LuxR fa... 39 0.094 UniRef50_B8G436 Transcriptional regulator, LuxR family n=3 Tax=C... 39 0.099 >UniRef50_P06626 Protein traJ n=12 Tax=Escherichia RepID=TRAJ1_ECOLI Length = 229 Score = 253 bits (647), Expect = 3e-66, Method: Composition-based stats. Identities = 229/229 (100%), Positives = 229/229 (100%) Query: 1 MYPMDRIQQKHARQIDLLENLTAVIQDYPNPACIRDETGKFIFCNTLFHESFLTQDQSAE 60 MYPMDRIQQKHARQIDLLENLTAVIQDYPNPACIRDETGKFIFCNTLFHESFLTQDQSAE Sbjct: 1 MYPMDRIQQKHARQIDLLENLTAVIQDYPNPACIRDETGKFIFCNTLFHESFLTQDQSAE 60 Query: 61 KWLLSQRDFCELISVTEMEAYRNEHTHLNLVEDVFIQNRFWTISVQSFLNGHRNIILWQF 120 KWLLSQRDFCELISVTEMEAYRNEHTHLNLVEDVFIQNRFWTISVQSFLNGHRNIILWQF Sbjct: 61 KWLLSQRDFCELISVTEMEAYRNEHTHLNLVEDVFIQNRFWTISVQSFLNGHRNIILWQF 120 Query: 121 YDAAHVRHKDSYNQKTIVSDDIRNIIRRMSDDSSVSSYVNDVFYLYSTGISHNAIARILN 180 YDAAHVRHKDSYNQKTIVSDDIRNIIRRMSDDSSVSSYVNDVFYLYSTGISHNAIARILN Sbjct: 121 YDAAHVRHKDSYNQKTIVSDDIRNIIRRMSDDSSVSSYVNDVFYLYSTGISHNAIARILN 180 Query: 181 ISISTSKKHASLICDYFSVSNKDELIILLYNKKFIYYLYEKAMCIINTR 229 ISISTSKKHASLICDYFSVSNKDELIILLYNKKFIYYLYEKAMCIINTR Sbjct: 181 ISISTSKKHASLICDYFSVSNKDELIILLYNKKFIYYLYEKAMCIINTR 229 >UniRef50_P13972 Protein traJ n=8 Tax=root RepID=TRAJ4_ECOLX Length = 223 Score = 198 bits (503), Expect = 1e-49, Method: Composition-based stats. Identities = 52/228 (22%), Positives = 101/228 (44%), Gaps = 11/228 (4%) Query: 1 MYPMDRIQQKHARQIDLLENLTAVIQDYPNPACIRDETGKFIFCNTLFHESFLTQDQSAE 60 MYP D Q RQI L + + + PAC+R+ G N F + F+ E Sbjct: 1 MYPTDPRQLNTERQIYLDKQF--FVDVFSIPACVRNTNGDLSATNEKFSKEFIGSLDIKE 58 Query: 61 KWLLSQRDFCELISVTEMEAYRNEHTHLNLVEDVFIQNRFWTISVQSFLNGHRNIILWQF 120 W S + E + + +N ++ V I ++ W + + G +LW F Sbjct: 59 -WFYSLPVQVATSFLREELDAMSLPSSMNKIQSVAIGDKLWLVQFIPLIYGEVVNVLWLF 117 Query: 121 Y-DAAHVRHKDSYNQKTIVSDDIRNIIRRMSDDSSVSSYVN-DVFYLYSTGISHNAIARI 178 + ++V +T +++D RM + + S+ + VF LYS G H +IA + Sbjct: 118 FCKNSNVIVDYCRGLRTNITND------RMLEFKNKSTEIQWKVFILYSFGFCHESIASL 171 Query: 179 LNISISTSKKHASLICDYFSVSNKDELIILLYNKKFIYYLYEKAMCII 226 L+I+ +S+ S + +F + +K +L+++ + + +++ I+ Sbjct: 172 LSITNGSSRNAISEVYKFFGIHSKHDLLMIFHTSRMHSLFFDELFFIL 219 >UniRef50_Q00738 Protein traJ n=3 Tax=Escherichia coli RepID=TRAJ9_ECOLX Length = 215 Score = 196 bits (499), Expect = 4e-49, Method: Composition-based stats. Identities = 57/228 (25%), Positives = 100/228 (43%), Gaps = 15/228 (6%) Query: 1 MYPMDRIQQKHARQIDLLENLTAVIQDYPNPACIRDETGKFIFCNTLFHESFLTQDQSAE 60 M MDR ++ Q+ +L I P C+R E G FI N F + + S + Sbjct: 1 MCAMDRRERALISQLHFTHSLGEAISFLKYPVCVRFEDGSFIKENNCFEKLIRSSFNSCD 60 Query: 61 KWLLSQRDFCEL-ISVTEMEAYRNEHTHLNLVEDVFIQNRFWTISVQSFLNGHRNIILWQ 119 +W S + C+L +S E+E+ + + +N D+ + N W++ ++S + +W+ Sbjct: 61 EWFDSLKLECKLQLSRAEIESCSSIYG-VNCNNDILLNNVLWSVIIESVITPCGYFFIWR 119 Query: 120 FYDAAHVRHKDSYNQKTIVSDDIRNIIRRMSDDSSVSSYVNDVFYLYSTGISHNAIARIL 179 F A+ N + V N + SD+ YV YL G SH+ + + Sbjct: 120 FIWVAND------NLSSFVVSKYSNELIVPSDE-----YVGIEPYL--IGFSHHYSSAKM 166 Query: 180 NISISTSKKHASLICDYFSVSNKDELIILLYNKKFIYYLYEKAMCIIN 227 NI++S SKK + + S++D + + + I LY K I+ Sbjct: 167 NITVSKSKKKTMKLFKRYGFSSRDLWLDEMIRTEKILPLYAKVKEILG 214 >UniRef50_A6TIF8 Expression of the tra operon n=1 Tax=Klebsiella pneumoniae subsp. pneumoniae MGH 78578 RepID=A6TIF8_KLEP7 Length = 228 Score = 190 bits (483), Expect = 3e-47, Method: Composition-based stats. Identities = 53/231 (22%), Positives = 97/231 (41%), Gaps = 15/231 (6%) Query: 4 MDRIQQKHARQIDLLENLTAVIQDYPNPACIRDETGKFIFCNTLFHESFLTQDQSAEKWL 63 MDRI+ + Q+D + + +PACIR G F N F +FL + + W Sbjct: 1 MDRIENTNCSQLDFFREMQLTVNLSSHPACIRLRDGSFSHFNHSFATTFL-HNINVNIWF 59 Query: 64 LSQRDFCEL-ISVTEMEAYRNEHTHLNLVEDVFIQNRFWTISVQSFLNGHRNIILWQFYD 122 L +S + E Y + L + E++ I W ++ LW+F Sbjct: 60 NRLEISSSLRLSALDAEVYSGDRKML-IEENLPINGNRWDFIIERMSFDGTEFTLWKF-- 116 Query: 123 AAHVRHKDSYNQKTIVSDDIRNIIRRMSDDSSVSSYVNDV----FYLYSTGISHNAIARI 178 H++ ++S I+++++ + ++ DV LYS G SHN I+ + Sbjct: 117 -CHLQRGG-----FLLSPVRSGFIKKLNEFKNALGFLTDVQIETLALYSFGASHNQISEV 170 Query: 179 LNISISTSKKHASLICDYFSVSNKDELIILLYNKKFIYYLYEKAMCIINTR 229 LNI++ TSK + I + ++E+ L+ + + +I +R Sbjct: 171 LNIAVGTSKNRVNRILAALPIRTREEVFYFLFASGMAFSFCKVVTELIGSR 221 >UniRef50_A6TIT1 Expression of the tra operon n=1 Tax=Klebsiella pneumoniae subsp. pneumoniae MGH 78578 RepID=A6TIT1_KLEP7 Length = 228 Score = 188 bits (478), Expect = 9e-47, Method: Composition-based stats. Identities = 56/239 (23%), Positives = 108/239 (45%), Gaps = 32/239 (13%) Query: 1 MYPMDRIQQKHARQIDLLENLTAVIQDYPNPACIRDETGKFIFCNTLFHESFLTQDQSAE 60 MYPMDR ++ RQ L +L A+I Y P CI +++G+F N+ F F QS Sbjct: 1 MYPMDRNEKDTCRQ-SLASSLEALIMHYSFPVCIHNQSGEFPAFNSAFLYEFGGALQSER 59 Query: 61 KW--LLSQRDFCELISVTEMEAY-RNEHTHLNLVEDVFIQNRFWTISVQSFLNGHRNIIL 117 W L+ F + + E+E + E ++ ++ ++I + + ++ F++ L Sbjct: 60 SWEELIGTDTF---LGLRELELLIQIEQSNFHIERCIYINGKQFDFMIEEFVSDGAVHFL 116 Query: 118 WQFYDAAHVRHKDSYNQKTIVSDDIRNIIRRMSDDSSVSSYVN----------DVFYLYS 167 W+F A S+ I+ I R + + V +++ D F Y+ Sbjct: 117 WKFGRA---------------SNSIKRITRSLPLHADVVNFMRAVKRLDKSEYDFFGFYA 161 Query: 168 TGISHNAIARILNISISTSKKHASLICDYFSVSNKDELIILLYNKKFIYYLYEKAMCII 226 G SH + + L + +S+ +S I ++S++D+ I+L+ + + + + II Sbjct: 162 GGASHKIMGQFLGLENGSSRNKSSQILTKLNISSRDDAFIVLHLSELLEPVMKNVRDII 220 >UniRef50_P05837 Protein traJ n=21 Tax=Enterobacteriaceae RepID=TRAJ2_ECOLX Length = 228 Score = 186 bits (473), Expect = 3e-46, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 84/235 (35%), Gaps = 13/235 (5%) Query: 1 MYPMDRIQQKHARQI--DLLENLTAVIQDYPNPACIRDETGKFIFCNTLFHESFLTQDQS 58 M +DR ++ Q + N+ + ++ P P C+R++ K ++ N F E F +D+ Sbjct: 1 MCALDRRERPLNSQSVNKYILNVQNIYRNSPVPVCVRNKNRKILYANGAFIELFSREDKP 60 Query: 59 AE-KWLLSQRDFCELISVTEMEAYRNEHTHLNLVEDVFIQNRFWTISVQSFL-NGHRNII 116 + + + L S+ E+E H F + I +++ +++ Sbjct: 61 LSGESYIRLQVEIFLSSL-ELECQALGHGSAFCRRFNF-HGEIYQIRMENVSFYNDESVV 118 Query: 117 LWQFYDAAHVRHKDSYNQKTIVSDDIRNIIRRMSDDSSVSSYVNDVFYLYSTGISHNAIA 176 LWQ + + S N +++ + +S VF Y G+ H IA Sbjct: 119 LWQI----NPFPDYPF-FALNQSGSNTNTSDKLTIWNDLSPGTLVVFSFYMLGVGHATIA 173 Query: 177 RILNISISTSKKHASLICDYFS--VSNKDELIILLYNKKFIYYLYEKAMCIINTR 229 R L I+ S+ + + D + K I L + Sbjct: 174 RELGITDRASEDRIKPVKRKIKEFFEHFDLFRVSCIYKGEIDSLLSIIREFYGVK 228 >UniRef50_C8T424 Putative uncharacterized protein n=1 Tax=Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884 RepID=C8T424_KLEPR Length = 219 Score = 166 bits (419), Expect = 7e-40, Method: Composition-based stats. Identities = 48/213 (22%), Positives = 88/213 (41%), Gaps = 11/213 (5%) Query: 21 LTAVIQDYPNPACIRDETGKFIFCNTLFHESFLTQDQSAEKWLLSQRD--FCELISVTEM 78 + ++ PA IRD G I + F + FLT + S F +L ++ Sbjct: 1 MREMLNISSCPAFIRDSRGDVIHTSPTFDKVFLTSGGAGTFDTPSAPGNWFLDLSLEVKL 60 Query: 79 EAYRNEHTHLN-----LVEDVFIQNRFWTISVQSFLNGHRNIILWQFYDAAHVRHKDSYN 133 E ++E + LV+ ++ + WT+ +++F N W F + S Sbjct: 61 ELMQSELKSFSEGSAVLVKKNWLVDSLWTVFIETFTINEENYSKWVFIKEGDQIPQSSR- 119 Query: 134 QKTIVSDDIRNIIRRMSDDSSVSSYVNDVFYLYSTGISHNAIARILNISISTSKKHASLI 193 + S ++ I R+ S+ S + +F LY+ G SH +I+RI+ I + TSK S I Sbjct: 120 EYNEFSKKMQGYIERI-QRSAKSDWA--IFNLYAVGFSHASISRIIGIEVQTSKNTVSKI 176 Query: 194 CDYFSVSNKDELIILLYNKKFIYYLYEKAMCII 226 + ++D +I+ + I+ Sbjct: 177 KKELNFDSRDYIILSSIYTLSYGRFVSNVLGIL 209 >UniRef50_Q8L368 TraJ n=1 Tax=Salmonella enterica subsp. enterica serovar Pullorum RepID=Q8L368_SALPU Length = 160 Score = 164 bits (415), Expect = 2e-39, Method: Composition-based stats. Identities = 96/149 (64%), Positives = 115/149 (77%) Query: 1 MYPMDRIQQKHARQIDLLENLTAVIQDYPNPACIRDETGKFIFCNTLFHESFLTQDQSAE 60 MYPMDRIQQ H RQI+LLENL VIQ + NPACIR+ +GKF+FCN LF E FL + SAE Sbjct: 1 MYPMDRIQQGHDRQINLLENLITVIQHFHNPACIRNVSGKFLFCNALFRELFLKETYSAE 60 Query: 61 KWLLSQRDFCELISVTEMEAYRNEHTHLNLVEDVFIQNRFWTISVQSFLNGHRNIILWQF 120 KWLLSQ DF ELIS+TEME YRNEHTHLNLVED+FIQNRFWTISVQ F + I++W+F Sbjct: 61 KWLLSQPDFSELISITEMEVYRNEHTHLNLVEDIFIQNRFWTISVQFFYSKPDGIVVWEF 120 Query: 121 YDAAHVRHKDSYNQKTIVSDDIRNIIRRM 149 +DA HVRH ++Y + DI+ +I + Sbjct: 121 FDATHVRHTNNYKPRFSGDYDIKKLIETI 149 >UniRef50_P33785 Protein traJ (Fragment) n=4 Tax=Enterobacteriaceae RepID=TRAJ7_ECOLX Length = 76 Score = 81.0 bits (198), Expect = 3e-14, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 4/76 (5%) Query: 1 MYPMDRIQQKHARQIDLLENLTAVIQDYPNPACIRDETGKFIFCNTLFHESFLTQDQSAE 60 M MD ++ RQ L +I P C+R E+GKFI N++F Q+ ++E Sbjct: 1 MCVMDTRERALIRQ----SGLPEIILSAKYPVCVRTESGKFIDSNSVFLHLIKCQNSNSE 56 Query: 61 KWLLSQRDFCELISVT 76 W +++ T Sbjct: 57 IWFSGIDIDTQILFHT 72 >UniRef50_Q46713 TraJ protein (Fragment) n=1 Tax=Plasmid R100 RepID=Q46713_9ZZZZ Length = 60 Score = 74.1 bits (180), Expect = 3e-12, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 1 MYPMDRIQQKHARQIDLLENLTAVIQDYPNPACIRDETGKFIFCNTLFHESFLTQDQSAE 60 MYP D Q RQI L + + + PAC+R+ G FI N F + F+ + Sbjct: 1 MYPTDPRQLNTERQIYLDKQF--FVDVFSIPACVRNTNGDFIGYNEKFSKEFIGSLDIPQ 58 Query: 61 K 61 + Sbjct: 59 E 59 >UniRef50_B5N6H7 Regulatory protein n=1 Tax=Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701 RepID=B5N6H7_SALET Length = 123 Score = 70.6 bits (171), Expect = 4e-11, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 46/128 (35%), Gaps = 8/128 (6%) Query: 105 VQSFLN-GHRNIILWQFYDAAHVRHKDSYNQKTIVSDDIRNIIRRMSDDSSVSSYVNDVF 163 +++ + I+LWQ ++ + ++ S + +S VF Sbjct: 1 MENISFDNNEIIVLWQI----NLFPDHPF-FSPDTKTKNLSLSGTESFWNELSPGTLLVF 55 Query: 164 YLYSTGISHNAIARILNISISTSKKHASLICDYF--SVSNKDELIILLYNKKFIYYLYEK 221 Y+ G+SH IA+ L I+I S+ + + + D I +K I L + Sbjct: 56 SFYTLGVSHANIAKELGITIRASEDRIKPVKRKIKRNYESFDSFRISCISKGKIISLIDI 115 Query: 222 AMCIINTR 229 + Sbjct: 116 IREFYCVK 123 >UniRef50_Q2SBZ5 Sensor protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SBZ5_HAHCH Length = 391 Score = 41.7 bits (96), Expect = 0.018, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 37/94 (39%) Query: 24 VIQDYPNPACIRDETGKFIFCNTLFHESFLTQDQSAEKWLLSQRDFCELISVTEMEAYRN 83 + P PA + G+FI CNTLF F + ++ + + F +L E + Sbjct: 37 FLNALPYPAVVHSHQGEFIACNTLFLREFSSDPKTLARLTSHRDSFLQLFQPVEAKDAHL 96 Query: 84 EHTHLNLVEDVFIQNRFWTISVQSFLNGHRNIIL 117 + +L N F+ ++ F + +L Sbjct: 97 KGDAFSLQAHCGETNAFYALNSAPFYDAEGERLL 130 >UniRef50_B8GUD1 Two component transcriptional regulator, LuxR family n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GUD1_THISH Length = 227 Score = 41.3 bits (95), Expect = 0.023, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 27/66 (40%) Query: 149 MSDDSSVSSYVNDVFYLYSTGISHNAIARILNISISTSKKHASLICDYFSVSNKDELIIL 208 S ++ ++ L + G S+ IAR L IS T K H I V ++ E +L Sbjct: 147 PSPFDELTPREGEILALLAEGQSNKVIARNLGISDGTVKLHVKAILRKLGVHSRVEAAVL 206 Query: 209 LYNKKF 214 + Sbjct: 207 AVQQGL 212 >UniRef50_Q4ZV39 Regulatory protein, LuxR:Response regulator receiver n=8 Tax=Pseudomonas RepID=Q4ZV39_PSEU2 Length = 222 Score = 40.9 bits (94), Expect = 0.030, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 8/79 (10%) Query: 132 YNQKTIVSDDIRNIIRRMSDDSS--------VSSYVNDVFYLYSTGISHNAIARILNISI 183 ++ + S ++RRM++ ++ ++ V L + G S+ I L I+ Sbjct: 123 RGEEALNSAVSARLLRRMTERNTSGAALPETLTPRERQVLGLVAGGFSNREIGEKLGITT 182 Query: 184 STSKKHASLICDYFSVSNK 202 T+K H + S++ Sbjct: 183 GTAKAHVEKVIGKLGASDR 201 >UniRef50_C7ML75 Response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7ML75_CRYCD Length = 472 Score = 40.9 bits (94), Expect = 0.034, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 2/90 (2%) Query: 129 KDSYNQKTIVSDDIRNIIRRMSDDSSVSSYVNDVFYLYSTGISHNAIARILNISISTSKK 188 ++ S + I + +SD +++ N++ G S + IA L IS ST + Sbjct: 385 DNNQASSASFSRGLPRIPKSLSD--KLTNRENEILVFLGRGYSISYIAEKLFISESTVRT 442 Query: 189 HASLICDYFSVSNKDELIILLYNKKFIYYL 218 H I + ++++L L+ + + Sbjct: 443 HVKHIYAKLGIHSREDLFALIDQSAEVETI 472 >UniRef50_Q1J2R1 Transcriptional regulator, LuxR family n=2 Tax=Deinococcus RepID=Q1J2R1_DEIGD Length = 180 Score = 40.9 bits (94), Expect = 0.035, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 2/74 (2%) Query: 148 RMSDDSSVSSYVNDVFYLYSTGISHNAIARILNISISTSKKHASLICDYFSVSNKDELII 207 + S ++ D+ L + G+++ IAR L I+ T + + + V + E I Sbjct: 107 TPAVRSPLTRAEGDLLRLVAHGLANKEIARELGIANQTVQNGLTRVFQKLGVEGRSEAI- 165 Query: 208 LLYNKKFIYYLYEK 221 L+ Y Sbjct: 166 -LHYWGLHSSSYRN 178 >UniRef50_B0C756 Two-component transcriptional regulator, LuxR family n=1 Tax=Acaryochloris marina MBIC11017 RepID=B0C756_ACAM1 Length = 224 Score = 40.5 bits (93), Expect = 0.048, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 32/75 (42%) Query: 148 RMSDDSSVSSYVNDVFYLYSTGISHNAIARILNISISTSKKHASLICDYFSVSNKDELII 207 ++ ++ DV L +TG S+ I+ L+I+ T K H S I V ++ +L I Sbjct: 150 QIEAFEGITPREQDVLKLVATGASNREISETLHITEKTVKNHVSSILSRVGVQSRTQLAI 209 Query: 208 LLYNKKFIYYLYEKA 222 + + A Sbjct: 210 WANSAGEETSSFAVA 224 >UniRef50_Q21T21 Two component transcriptional regulator, LuxR family n=2 Tax=Comamonadaceae RepID=Q21T21_RHOFD Length = 262 Score = 40.2 bits (92), Expect = 0.055, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 6/98 (6%) Query: 126 VRHKDSYNQKTIVSDDIRNIIRRM------SDDSSVSSYVNDVFYLYSTGISHNAIARIL 179 R +++ ++S I S +S +V L + G S+ IAR+ Sbjct: 163 DRRENNRVLAPVLSSSIAIKSEATEDGEAKSQRGLLSPREQEVLALIARGFSYTEIARLQ 222 Query: 180 NISISTSKKHASLICDYFSVSNKDELIILLYNKKFIYY 217 +S+ T + H + SV +K E + + Sbjct: 223 GLSVHTVQTHIKNLYGKLSVHSKSEAVFEATRMGLLSP 260 >UniRef50_C8WNS5 Transcriptional regulator, LuxR family n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WNS5_EGGLE Length = 517 Score = 40.2 bits (92), Expect = 0.056, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 28/69 (40%) Query: 141 DIRNIIRRMSDDSSVSSYVNDVFYLYSTGISHNAIARILNISISTSKKHASLICDYFSVS 200 +++ M +S +V LY+ G + +A L I+ T H I + Sbjct: 444 SMKHNAEEMGKQFLLSDREIEVMALYALGYTQKRVAEELFITQGTVHAHIKRIYAKTGLH 503 Query: 201 NKDELIILL 209 ++ E++ L Sbjct: 504 SRQEILDYL 512 >UniRef50_Q5LQW4 DNA-binding response regulator, LuxR family n=2 Tax=Rhodobacterales RepID=Q5LQW4_SILPO Length = 220 Score = 40.2 bits (92), Expect = 0.056, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 33/66 (50%) Query: 152 DSSVSSYVNDVFYLYSTGISHNAIARILNISISTSKKHASLICDYFSVSNKDELIILLYN 211 + +++ DVF L G+++ IAR+L++S ST K H S I +++ + I + Sbjct: 150 EQNLTPRQRDVFELMCKGLANKEIARLLDLSESTVKSHVSAIFKQIGTTSRSKTIAIFRQ 209 Query: 212 KKFIYY 217 + Sbjct: 210 EGVALP 215 >UniRef50_D1GLT1 LuxR-family transcriptional regulator n=1 Tax=Streptomyces lydicus RepID=D1GLT1_9ACTO Length = 943 Score = 39.8 bits (91), Expect = 0.070, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 43/91 (47%), Gaps = 3/91 (3%) Query: 118 WQFYDAAHVRHKDSYNQKTIVSDDIRNIIRR---MSDDSSVSSYVNDVFYLYSTGISHNA 174 W + T ++++ +R +D +S+SS V L + G ++ Sbjct: 833 WNAARHCQAEPLLRRLKPTGGAEEVDRPLRVQAGPADIASLSSAERRVATLATLGYTNRE 892 Query: 175 IARILNISISTSKKHASLICDYFSVSNKDEL 205 I+R L+I++ST ++H + + +V ++ E+ Sbjct: 893 ISRKLHITVSTVEQHLTRVYRKLNVRHRTEI 923 >UniRef50_A7HPF0 Response regulator receiver protein n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HPF0_PARL1 Length = 279 Score = 39.8 bits (91), Expect = 0.072, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 37/94 (39%) Query: 119 QFYDAAHVRHKDSYNQKTIVSDDIRNIIRRMSDDSSVSSYVNDVFYLYSTGISHNAIARI 178 Q + A R + ++ I + R S+S +V L G+ ++ R+ Sbjct: 175 QHFWALLDRQDNEEQDRSFQLHQILSTAYRRFGGDSLSDREKEVTNLLLKGLPPKSVGRM 234 Query: 179 LNISISTSKKHASLICDYFSVSNKDELIILLYNK 212 L I+ T + H I V ++ EL+ L + Sbjct: 235 LGIAPGTVRNHIKRIYVKLDVRSQAELLALFFET 268 >UniRef50_C5C4U8 Two component transcriptional regulator, LuxR family n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C4U8_BEUC1 Length = 216 Score = 39.8 bits (91), Expect = 0.073, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 34/84 (40%) Query: 130 DSYNQKTIVSDDIRNIIRRMSDDSSVSSYVNDVFYLYSTGISHNAIARILNISISTSKKH 189 + ++ R + + +S DV L + G S+ IAR L ++ ST K H Sbjct: 131 SPRATRALIDRIARAAPDAAAVAADLSPRERDVLALLARGFSNAEIARELFVAESTVKTH 190 Query: 190 ASLICDYFSVSNKDELIILLYNKK 213 S + V ++ +++ Y Sbjct: 191 VSSLTRKVGVRDRLHVVVWAYRNG 214 >UniRef50_A4XXY6 Putative PAS/PAC sensor protein n=1 Tax=Pseudomonas mendocina ymp RepID=A4XXY6_PSEMY Length = 221 Score = 39.4 bits (90), Expect = 0.086, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 28/65 (43%) Query: 149 MSDDSSVSSYVNDVFYLYSTGISHNAIARILNISISTSKKHASLICDYFSVSNKDELIIL 208 + ++ L G+S+ IAR L IS T K + + F +S++ EL Sbjct: 14 VPAWEELTEREGQTLALIGAGLSNKQIARELGISDGTVKIYVRSLLRKFRLSSRLELATR 73 Query: 209 LYNKK 213 L+ + Sbjct: 74 LHRRG 78 >UniRef50_C8WGW7 Transcriptional regulator, LuxR family n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WGW7_EGGLE Length = 478 Score = 39.4 bits (90), Expect = 0.087, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 37/84 (44%) Query: 137 IVSDDIRNIIRRMSDDSSVSSYVNDVFYLYSTGISHNAIARILNISISTSKKHASLICDY 196 + D+ R++D +S +V G S +A+ + +S ST + H I Sbjct: 394 NLLSDLETCCNRVADKGGLSKREREVLLFLGRGYSPAYVAKKMFLSDSTVRSHIKSIYKK 453 Query: 197 FSVSNKDELIILLYNKKFIYYLYE 220 + ++++L+ L+ N+ + + Sbjct: 454 LDIHSREDLLQLIENENEPSSMTD 477 >UniRef50_Q1AVR6 Two component transcriptional regulator, LuxR family n=17 Tax=Bacteria RepID=Q1AVR6_RUBXD Length = 220 Score = 39.4 bits (90), Expect = 0.094, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 26/56 (46%) Query: 161 DVFYLYSTGISHNAIARILNISISTSKKHASLICDYFSVSNKDELIILLYNKKFIY 216 +V L ++G S+ IAR L I+ T K H S I ++ + + + +I Sbjct: 163 EVLRLVASGASNREIARALYITEGTVKNHISSILRKLGFRDRTQAALYALERGWIE 218 >UniRef50_B8G436 Transcriptional regulator, LuxR family n=3 Tax=Chloroflexus RepID=B8G436_CHLAD Length = 508 Score = 39.4 bits (90), Expect = 0.099, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 33/67 (49%) Query: 149 MSDDSSVSSYVNDVFYLYSTGISHNAIARILNISISTSKKHASLICDYFSVSNKDELIIL 208 M+++S +S ++ L +TG ++ IA LNIS++T K H I V ++ E + Sbjct: 1 MTNESPISEREREILRLVATGATNQQIAVALNISVNTVKVHLRNIFAKIGVESRTEATVY 60 Query: 209 LYNKKFI 215 + Sbjct: 61 AIRTGIV 67 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.319 0.124 0.302 Lambda K H 0.267 0.0379 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 920,619,832 Number of Sequences: 3077464 Number of extensions: 26429286 Number of successful extensions: 118037 Number of sequences better than 1.0e-01: 41 Number of HSP's better than 0.1 without gapping: 56 Number of HSP's successfully gapped in prelim test: 25 Number of HSP's that attempted gapping in prelim test: 117940 Number of HSP's gapped (non-prelim): 82 length of query: 229 length of database: 1,040,396,356 effective HSP length: 124 effective length of query: 105 effective length of database: 658,790,820 effective search space: 69173036100 effective search space used: 69173036100 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.4 bits) S2: 90 (39.4 bits)