Reference sequence (query): batch____ Identities normalised by aligned length. Colored by: property
HSP processing: ranked Search cycle: 2
1 [ . . . . : . . . . 1 . . . . : . . . . 2 . . ] 229
batch____ bits E-value N 100.0% 1:229 MYPMDRIQQKHARQIDLLENLTAVIQDYPNPACIRDETGKFIFCNTLFHESFLTQDQSAEKWLLSQRDFCELISVTEMEAYRNEHTHLNLVEDVFIQNRFWTISVQSFLNGHRNIILWQFYDAAHVRHKDSYNQKTIVSDDIRNIIRRMSDDSSVSSYVNDVFYLYSTGISHNAIARILNISISTSKKHASLICDYFSVSNKDELIILLYNKKFIYYLYEKAMCIINTR
1 UniRef50_P06626 Protein traJ n=12 Tax=Esche... 253 2e-66 1 100.0% 1:229 1:229 MYPMDRIQQKHARQIDLLENLTAVIQDYPNPACIRDETGKFIFCNTLFHESFLTQDQSAEKWLLSQRDFCELISVTEMEAYRNEHTHLNLVEDVFIQNRFWTISVQSFLNGHRNIILWQFYDAAHVRHKDSYNQKTIVSDDIRNIIRRMSDDSSVSSYVNDVFYLYSTGISHNAIARILNISISTSKKHASLICDYFSVSNKDELIILLYNKKFIYYLYEKAMCIINTR
2 UniRef50_P13972 Protein traJ n=8 Tax=root R... 196 5e-49 1 23.0% 1:226 1:219 MYPTDPRQLNTERQIYLDKQF--FVDVFSIPACVRNTNGDLSATNEKFSKEFIGSLDIKE-WFYSLPVQVATSFLREELDAMSLPSSMNKIQSVAIGDKLWLVQFIPLIYGEVVNVLWLFfkNSNVIVDYCRGLRTNITND------RMLEFKNKSTEIqkVFILYSFGFCHESIASLLSITNGSSRNAISEVYKFFGIHSKHDLLMIFHTSRMHSLFFDELFFIL---
3 UniRef50_Q00738 Protein traJ n=3 Tax=Escher... 196 7e-49 1 24.7% 1:227 1:214 MCAMDRRERALISQLHFTHSLGEAISFLKYPVCVRFEDGSFIKENNCFEKLIRSSFNSCDEWFDSLKLECKllSRAEIESCSSIYG-VNCNNDILLNNVLWSVIIESVITPCGYFFIWRFIWVAND------NLSSFVVSKYSNELIVPSDE-----YVGIEPYL--IGFSHHYSSAKMNITVSKSKKKTMKLFKRYGFSSRDLWLDEMIRTEKILPLYAKVKEILG--
4 UniRef50_P05837 Protein traJ n=21 Tax=Enter... 193 3e-48 1 18.8% 1:229 1:228 MCALDRRERPLNSQskYILNVQNIYRNSPVPVCVRNKNRKILYANGAFIELFSREDKPLseSYIRLQVEIFLSSL-ELECQALGHGSAFCRRFNF-HGEIYQIRMENVsyNDESVVLWQI----NPFPDYPF-FALNQSGSNTNTSDKLTIWNDLSPGTLVVFSFYMLGVGHATIARELGITDRASEDRIKPVKRKIkfEHFDLFRVSCIYKGEIDSLLSIIREFYGVK
5 UniRef50_A6TIF8 Expression of the tra opero... 186 4e-46 1 22.6% 4:229 1:221 ---MDRIENTNCSQLDFFREMQLTVNLSSHPACIRLRDGSFSHFNHSFATTFL-HNINVNIWFNRLEISSSllSALDAEVYSGDRKML-IEENLPINGNRWDFIIERMSFDGTEFTLWKF---CHLQRGG-----FLLSPVRSGFIKKLNEFKNALGFLTDvlALYSFGASHNQISEVLNIAVGTSKNRVNRILAALPIRTREEVFYFLFASGMAFSFCKVVTELIGSR
6 UniRef50_A6TIT1 Expression of the tra opero... 186 5e-46 1 23.5% 1:226 1:220 MYPMDRNEKDTCRQ-SLASSLEALIMHYSFPVCIHNQSGEFPAFNSAFLYEFGGALQSERSwlIGTDTF---LGLRELELlqIEQSNFHIERCIYINGKQFDFMIEEFVSDGAVHFLWKFGRA---------------SNSIKRITRSLPLHADVVNFMrdFFGFYAGGASHKIMGQFLGLENGSSRNKSSQILTKLNISSRDDAFIVLHLSELLEPVMKNVRDII---
7 UniRef50_C8T424 Putative uncharacterized pr... 174 2e-42 1 22.3% 21:226 1:209 --------------------MREMLNISSCPAFIRDSRGDVIHTSPTFDKVFLTSGGAGTFDTPSAPgfLDLSLEVKLELMQSELKSFslVKKNWLVDSLWTVFIETFTINEENYSKWVFIKEGDQIPQSSR-EYNEFSKKMQGYIERI-QRSAKSDWA--IFNLYAVGFSHASISRIIGIEVQTSKNTVSKIKKELNFDSRDYIILSSIYTLSYGRFVSNVLGIL---
8 UniRef50_Q8L368 TraJ n=1 Tax=Salmonella ent... 168 1e-40 1 64.4% 1:149 1:149 MYPMDRIQQGHDRQINLLENLITVIQHFHNPACIRNVSGKFLFCNALFRELFLKETYSAEKWLLSQPDFSELISITEMEVYRNEHTHLNLVEDIFIQNRFWTISVQFFYSKPDGIVVWEFFDATHVRHTNNYKPRFSGDYDIKKLIETI--------------------------------------------------------------------------------
9 UniRef50_B5N6H7 Regulatory protein n=1 Tax=... 101 2e-20 1 18.4% 105:229 1:123 --------------------------------------------------------------------------------------------------------MENISfnNEIIVLWQI----NLFPDHPF-FSPDTKTKNLSLSGTESFWNELSPGTLLVFSFYTLGVSHANIAKELGITIRASEDRIKPVKRKinYESFDSFRISCISKGKIISLIDIIREFYCVK
10 UniRef50_P33785 Protein traJ (Fragment) n=4... 81 2e-14 1 27.6% 1:76 1:72 MCVMDTRERALIRQ----SGLPEIILSAKYPVCVRTESGKFIDSNSVFLHLIKCQNSNSEIWFSGIDIDTQILFHT---------------------------------------------------------------------------------------------------------------------------------------------------------
11 UniRef50_Q46713 TraJ protein (Fragment) n=1... 75 2e-12 1 31.1% 1:61 1:59 MYPTDPRQLNTERQIYLDKQF--FVDVFSIPACVRNTNGDFIGYNEKFSKEFIGSLDIPQE------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12 UniRef50_B8GUD1 Two component transcription... 42 0.014 1 25.8% 149:214 147:212 ----------------------------------------------------------------------------------------------------------------------------------------------------PSPFDELTPREGEILALLAEGQSNKVIARNLGISDGTVKLHVKAILRKLGVHSRVEAAVLAVQQGL---------------
13 UniRef50_Q2SBZ5 Sensor protein n=1 Tax=Hahe... 42 0.017 1 21.3% 24:117 37:130 -----------------------FLNALPYPAVVHSHQGEFIACNTLFLREFSSDPKTLARLTSHRDSFLQLFQPVEAKDAHLKGDAFSLQAHCGETNAFYALNSAPFYDAEGERLL----------------------------------------------------------------------------------------------------------------
14 UniRef50_Q21T21 Two component transcription... 41 0.027 1 19.6% 126:217 163:260 -----------------------------------------------------------------------------------------------------------------------------DRRENNRVLAPVLSSSIAIKSEAtsQRGLLSPREQEVLALIARGFSYTEIARLQGLSVHTVQTHIKNLYGKLSVHSKSEAVFEATRMGLLSP------------
15 UniRef50_Q4ZV39 Regulatory protein, LuxR:Re... 41 0.038 1 21.1% 132:202 123:201 -----------------------------------------------------------------------------------------------------------------------------------RGEEALNSAVSARLLRRMTERNtlTPRERQVLGLVAGGFSNREIGEKLGITTGTAKAHVEKVIGKLGASDR---------------------------
16 UniRef50_B0C756 Two-component transcription... 41 0.038 1 20.4% 120:222 117:224 -----------------------------------------------------------------------------------------------------------------------FIQSIQQAHKGYLQLGPGLGQKLCQLLKtiEAFEGITPREQDVLKLVATGASNREISETLHITEKTVKNHVSSILSRVGVQSRTQLAIWANSAGEETSSFAVA-------
17 UniRef50_D1GLT1 LuxR-family transcriptional... 40 0.050 1 28.1% 149:205 867:923 ----------------------------------------------------------------------------------------------------------------------------------------------------PADIASLSSAERRVATLATLGYTNREISRKLHITVSTVEQHLTRVYRKLNVRHRTEI------------------------
18 UniRef50_D2QS64 RNA polymerase, sigma-24 su... 40 0.052 1 28.4% 126:192 108:169 -----------------------------------------------------------------------------------------------------------------------------VEPDYEWADTAVNENDLLRMVNQMPD------GYRTVFNLYAigYSHAEIAEMLGISEGTSKSQLSR-------------------------------------
19 UniRef50_A4XXY6 Putative PAS/PAC sensor pro... 40 0.054 1 23.0% 149:222 14:87 ----------------------------------------------------------------------------------------------------------------------------------------------------VPAWEELTEREGQTLALIGAGLSNKQIARELGISDGTVKIYVRSLLRKFRLSSRLELATRLHRRGASWRMSDEA-------
20 UniRef50_A7HPF0 Response regulator receiver... 40 0.058 1 21.3% 119:212 175:268 ----------------------------------------------------------------------------------------------------------------------QHFWALLDRQDNEEQDRSFQLHQILSTAYRRFGGDSLSDREKEVTNLLLKGLPPKSVGRMLGIAPGTVRNHIKRIYVKLDVRSQAELLALFFET-----------------
21 UniRef50_A6EES1 Putative RNA polymerase ECF... 40 0.060 1 24.4% 121:198 89:161 ------------------------------------------------------------------------------------------------------------------------IDDAFDQPSTGFDFSRLGMQDLMRIIQKLAD------GYRVVFNMYAigYSHKEIADTLGISEGASKSQLSRARAILK-------------------------------
22 UniRef50_C8WNS5 Transcriptional regulator, ... 40 0.060 1 20.3% 141:209 444:512 --------------------------------------------------------------------------------------------------------------------------------------------SMKHNAEEMGKQFLLSDREIEVMALYALGYTQKRVAEELFITQGTVHAHIKRIYAKTGLHSRQEILDYL--------------------
23 UniRef50_C8WGW7 Transcriptional regulator, ... 40 0.062 1 20.8% 135:206 392:463 --------------------------------------------------------------------------------------------------------------------------------------KPNLLSDLETCCNRVADKGGLSKREREVLLFLGRGYSPAYVAKKMFLSDSTVRSHIKSIYKKLDIHSREDLL-----------------------
24 UniRef50_C5C4U8 Two component transcription... 40 0.069 1 21.4% 130:213 131:214 ---------------------------------------------------------------------------------------------------------------------------------SPRATRALIDRIARAAPDAAAVAADLSPRERDVLALLARGFSNAEIARELFVAESTVKTHVSSLTRKVGVRDRLHVVVWAYRNG----------------
25 UniRef50_Q728G6 HAMP domain protein n=3 Tax... 40 0.082 1 23.5% 4:84 349:436 ---IDMRREVEGKARHRLEFLRSLMNAVPCPIFFRNREGAFIDCNDNFAELVLGVDIAepEDFPglPIYLEEMRRGEELLWRDG-------------------------------------------------------------------------------------------------------------------------------------------------
26 UniRef50_C7ML75 Response regulator containi... 39 0.094 1 20.0% 129:218 385:472 --------------------------------------------------------------------------------------------------------------------------------DNNQASSASFSRGLPRIPKSLSD--KLTNRENEILVFLGRGYSISYIAEKLFISESTVRTHVKHIYAKLGIHSREDLFALIDQSAEVETI-----------
27 UniRef50_B2JVP2 Two component transcription... 39 0.097 1 21.1% 137:207 134:204 ----------------------------------------------------------------------------------------------------------------------------------------SLVHALSGGQRIPAAQNDLTARELEVFDYLVAGLCNKAIARKLDISVGTVKVHVKHVLRKLDLHSRLEAVL----------------------
28 UniRef50_A3Z856 Transcriptional regulator, ... 39 0.099 1 20.2% 94:202 56:171 ---------------------------------------------------------------------------------------------IFLRRESQDVVMEAMDSGADGVVFIsfYKALERVVSGGTYIPSDVQDKIS--MIRPPGWDDLSKKELEVIYILADGLSNKEISEQLFVSIETVKSHLNSIYSKLAVRSR---------------------------
consensus/100% .....................................................................................................................................................................................................................................
consensus/90% .....................................................................................................................................................................................................................................
consensus/80% ....................................................................................................................................................................h...G.s.t..ut...lt.ttsp........................................
consensus/70% ..........................................................................................................................................................h..h...lh.hhshGhs.t.luc.l.ls.tssctphp.lhthhthpph........................
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