BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (513 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q9ZIB7 Transcriptional regulatory protein tyrR n=263 Ta... 769 0.0 UniRef50_Q15RI2 Transcriptional regulator, TyrR n=12 Tax=Bacteri... 507 e-142 UniRef50_B4RUH9 Transcriptional regulatory protein tyrR n=6 Tax=... 499 e-140 UniRef50_Q12L04 Transcriptional regulator, TyrR n=3 Tax=Shewanel... 486 e-135 UniRef50_A6FE33 Sigma-54 dependent transcriptional regulator Tyr... 473 e-132 UniRef50_UPI0000E0E363 sigma-54 dependent transcriptional regula... 468 e-130 UniRef50_Q2FA16 TyrR n=1 Tax=Vibrio sp. DAT722 RepID=Q2FA16_9VIBR 449 e-124 UniRef50_Q48G07 Transcriptional regulator PhhR n=28 Tax=cellular... 408 e-112 UniRef50_A3Y5W7 Transcriptional regulatory protein n=1 Tax=Marin... 372 e-101 UniRef50_B1JB99 Sigma-54 factor interaction domain-containing pr... 368 e-100 UniRef50_A3YA14 Sigma-54 dependent transcriptional regulator n=1... 325 2e-87 UniRef50_Q484S1 Sigma-54 dependent transcriptional regulator n=1... 320 1e-85 UniRef50_Q3AAC4 Sigma-54 dependent transcriptional regulator n=2... 306 1e-81 UniRef50_P44694 Transcriptional regulatory protein tyrR n=31 Tax... 285 3e-75 UniRef50_B2A3R3 PAS modulated sigma54 specific transcriptional r... 281 5e-74 UniRef50_B8G264 Putative sigma54 specific transcriptional regula... 277 6e-73 UniRef50_C6Q1R8 PAS modulated sigma54 specific transcriptional r... 269 2e-70 UniRef50_A0Q207 Transcriptional regulator n=3 Tax=Clostridium Re... 265 3e-69 UniRef50_A6VW55 Sigma-54 factor interaction domain-containing pr... 259 1e-67 UniRef50_A1HQW3 Sigma54 specific transcriptional regulator, Fis ... 251 5e-65 UniRef50_A1VG32 Sigma54 specific transcriptional regulator, Fis ... 250 7e-65 UniRef50_B8F9P3 PAS modulated sigma54 specific transcriptional r... 250 1e-64 UniRef50_C4XRZ0 Fis family transcriptional regulator n=1 Tax=Des... 246 1e-63 UniRef50_Q5WE88 Transcriptional activator of the acetoin dehydro... 243 2e-62 UniRef50_A1HSG4 Putative PAS/PAC sensor protein n=1 Tax=Thermosi... 240 1e-61 UniRef50_C8X2X5 PAS modulated sigma54 specific transcriptional r... 238 3e-61 UniRef50_B2A7X5 Putative sigma54 specific transcriptional regula... 238 6e-61 UniRef50_A5D511 Transcriptional regulator n=1 Tax=Pelotomaculum ... 236 1e-60 UniRef50_B8DQH7 PAS modulated sigma54 specific transcriptional r... 236 2e-60 UniRef50_A4J593 Sigma54 specific transcriptional regulator, Fis ... 234 4e-60 UniRef50_Q2RKJ6 Sigma54 specific transcriptional regulator with ... 234 5e-60 UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional... 234 6e-60 UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional... 234 7e-60 UniRef50_A1HNH8 Sigma54 specific transcriptional regulator, Fis ... 232 3e-59 UniRef50_D0MEW0 Transcriptional regulator, NifA subfamily, Fis F... 231 5e-59 UniRef50_A1HRK7 Sigma54 specific transcriptional regulator, Fis ... 231 6e-59 UniRef50_B2A2S4 PAS modulated sigma54 specific transcriptional r... 231 7e-59 UniRef50_P30667 Nif-specific regulatory protein n=6 Tax=Bacteria... 230 8e-59 UniRef50_Q311G4 DNA-binding protein Fis / transcriptional regula... 230 8e-59 UniRef50_A6C0D3 Sigma-54 dependent transcriptional regulator/res... 230 1e-58 UniRef50_Q1JWW3 GAF modulated sigma54 specific transcriptional r... 229 2e-58 UniRef50_C0GRG2 PAS modulated sigma54 specific transcriptional r... 229 2e-58 UniRef50_A5D1E1 Transcriptional regulator n=3 Tax=Bacteria RepID... 229 2e-58 UniRef50_A8S4D9 Putative uncharacterized protein n=1 Tax=Clostri... 228 3e-58 UniRef50_A8ZU14 Two component, sigma54 specific, transcriptional... 228 3e-58 UniRef50_C6XRL0 Two component, sigma54 specific, transcriptional... 228 6e-58 UniRef50_A8S1K8 Putative uncharacterized protein n=1 Tax=Clostri... 227 7e-58 UniRef50_A1VAP6 Sigma54 specific transcriptional regulator, Fis ... 227 9e-58 UniRef50_C9RM62 Sigma54 specific transcriptional regulator, Fis ... 227 1e-57 UniRef50_B8F9K7 Two component, sigma54 specific, transcriptional... 226 1e-57 UniRef50_C1MDK5 Sigma-54 dependent transcriptional regulator n=3... 226 2e-57 UniRef50_D0LTW0 Two component, sigma54 specific, transcriptional... 226 2e-57 UniRef50_C8VXU8 Putative sigma54 specific transcriptional regula... 225 2e-57 UniRef50_C1PBV8 Putative sigma54 specific transcriptional regula... 225 3e-57 UniRef50_C0GH67 PAS modulated sigma54 specific transcriptional r... 225 3e-57 UniRef50_B0K647 Sigma54 specific transcriptional regulator, Fis ... 225 3e-57 UniRef50_C9KM56 Sigma-54 dependent transcriptional regulator/sen... 224 5e-57 UniRef50_C9XRA6 Probable sigma54-dependent transcriptional regul... 224 6e-57 UniRef50_Q07T09 Two component, sigma54 specific, transcriptional... 224 9e-57 UniRef50_Q24N84 Putative uncharacterized protein n=1 Tax=Desulfi... 223 9e-57 UniRef50_A4J599 Sigma54 specific transcriptional regulator, Fis ... 223 9e-57 UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC ... 223 9e-57 UniRef50_A0NV29 LuxO repressor protein n=3 Tax=Rhodobacteraceae ... 223 1e-56 UniRef50_Q3ACP6 Sigma-54 dependent transcriptional regulator n=4... 223 1e-56 UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator... 223 1e-56 UniRef50_UPI00016C5695 DNA-binding protein Fis / transcriptional... 223 2e-56 UniRef50_B2A661 PAS modulated sigma54 specific transcriptional r... 222 2e-56 UniRef50_B8FKE8 Sigma54 specific transcriptional regulator, Fis ... 222 2e-56 UniRef50_Q00934 Type 4 fimbriae expression regulatory protein pi... 222 2e-56 UniRef50_A5I3D4 Putative sigma-54 dependent transcriptional regu... 222 2e-56 UniRef50_B0TGM7 Sigma-54 dependent response regulator n=1 Tax=He... 222 3e-56 UniRef50_P12626 Nitrogen fixation protein anfA n=11 Tax=Bacteria... 222 3e-56 UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional... 222 3e-56 UniRef50_Q5WKW0 Transcriptional regulator n=1 Tax=Bacillus claus... 222 3e-56 UniRef50_Q7M8U4 TRANSCRIPTIONAL REGULATOR (NIFA FAMILY) n=1 Tax=... 221 5e-56 UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional... 221 6e-56 UniRef50_A8ZYR3 Two component, sigma54 specific, transcriptional... 221 6e-56 UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulato... 221 6e-56 UniRef50_A1HPH1 Putative PAS/PAC sensor protein n=1 Tax=Thermosi... 221 7e-56 UniRef50_UPI00016C44AF cetoacetate metabolism regulatory protein... 221 7e-56 UniRef50_Q3A203 Two component signal transduction response regul... 220 8e-56 UniRef50_C3ICC4 Sigma54 specific transcriptional regulator, Fis ... 220 9e-56 UniRef50_Q1IRB0 Two component, sigma54 specific, transcriptional... 220 9e-56 UniRef50_Q0AWW3 Sigma-L-dependent transcriptional regulator n=4 ... 220 9e-56 UniRef50_P0AFB9 Nitrogen regulation protein NR(I) n=502 Tax=Bact... 220 1e-55 UniRef50_A0LGU2 Two component, sigma54 specific, transcriptional... 220 1e-55 UniRef50_A8ARB9 Putative uncharacterized protein n=1 Tax=Citroba... 220 1e-55 UniRef50_Q1ITP4 Two component, sigma54 specific, transcriptional... 220 1e-55 UniRef50_Q0SQI9 Phosphocarrier HPr/sensory box protein/sigma-54 ... 219 2e-55 UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=... 219 2e-55 UniRef50_B8IZX3 Transcriptional regulator, NifA subfamily, Fis F... 219 2e-55 UniRef50_A6TPV3 Sigma54 specific transcriptional regulator, Fis ... 219 2e-55 UniRef50_A1AUC3 Two component, sigma54 specific, transcriptional... 219 2e-55 UniRef50_A6LVD4 Sigma54 specific transcriptional regulator, Fis ... 218 3e-55 UniRef50_Q897M6 Transcriptional regulatory protein n=1 Tax=Clost... 218 3e-55 UniRef50_D0LUW9 Sigma54 specific transcriptional regulator, Fis ... 218 3e-55 UniRef50_C0GEG9 PAS modulated sigma54 specific transcriptional r... 218 4e-55 UniRef50_A7GLU4 Putative PAS/PAC sensor protein n=1 Tax=Bacillus... 218 4e-55 UniRef50_A0LLZ0 Two component, sigma54 specific, transcriptional... 218 4e-55 UniRef50_B2A8I7 Putative sigma54 specific transcriptional regula... 218 4e-55 UniRef50_C3AI49 Sigma54 specific transcriptional regulator, Fis ... 218 4e-55 UniRef50_P28787 Nitrogen regulation protein NR(I) n=29 Tax=Gamma... 218 5e-55 UniRef50_A6TVV8 Sigma54 specific transcriptional regulator, Fis ... 218 5e-55 UniRef50_A0LIA2 Sigma54 specific transcriptional regulator, Fis ... 218 5e-55 UniRef50_C0QUD7 Nitrogen assimilation regulatory protein n=1 Tax... 218 5e-55 UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional... 218 5e-55 UniRef50_D0LWE6 Transcriptional regulator, NifA subfamily, Fis F... 218 5e-55 UniRef50_Q67SC0 Sigma-54-dependent transcriptional regulator n=2... 218 5e-55 UniRef50_P29267 Hydrogenase transcriptional regulatory protein h... 218 6e-55 UniRef50_A8UUR2 Transcriptional regulator (NtrC family) protein ... 218 6e-55 UniRef50_D2R3W1 Sigma54 specific transcriptional regulator, Fis ... 217 7e-55 UniRef50_B1KVR7 Sigma-54 dependent transcriptional regulator n=1... 217 7e-55 UniRef50_B5YI45 Transcriptional activator n=1 Tax=Thermodesulfov... 217 7e-55 UniRef50_C6HYM0 Sigma54 specific transcriptional regulator, Fis ... 217 8e-55 UniRef50_A1HS80 Sigma54 specific transcriptional regulator, Fis ... 217 8e-55 UniRef50_Q3ACI2 Sigma-54-dependent transcriptional regulator n=1... 217 9e-55 UniRef50_B3Q676 Transcriptional regulator, NifA subfamily, Fis F... 217 9e-55 UniRef50_B3E5G9 Sigma54 specific transcriptional regulator, Fis ... 217 1e-54 UniRef50_B8FIT8 PAS modulated sigma54 specific transcriptional r... 217 1e-54 UniRef50_B3E4E8 Putative sigma54 specific transcriptional regula... 217 1e-54 UniRef50_Q0SR73 Sigma-54 dependent transcriptional regulator n=1... 216 1e-54 UniRef50_B6WRE4 Putative uncharacterized protein n=1 Tax=Desulfo... 216 1e-54 UniRef50_D0LHM6 Sigma54 specific transcriptional regulator, Fis ... 216 1e-54 UniRef50_A3ERY0 Putative two component, sigma54 specific, transc... 216 1e-54 UniRef50_B5ZJF6 Transcriptional regulator, NifA, Fis Family n=4 ... 216 1e-54 UniRef50_B4RA20 Sigma-54-dependent transcriptional regulator (Ac... 216 1e-54 UniRef50_C0Q9L2 Sigma-54 dependent transcriptional regulator n=4... 216 1e-54 UniRef50_P09133 Nif-specific regulatory protein n=18 Tax=Rhizobi... 216 2e-54 UniRef50_B8JEK1 Sensor protein n=14 Tax=cellular organisms RepID... 216 2e-54 UniRef50_B4ULZ7 Transcriptional regulator, NifA, Fis Family n=2 ... 216 2e-54 UniRef50_D0XNN9 Two component, sigma54 specific, transcriptional... 216 2e-54 UniRef50_B9XM81 Sigma54 specific transcriptional regulator with ... 216 2e-54 UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC ... 216 2e-54 UniRef50_C5DAI7 PAS modulated sigma54 specific transcriptional r... 216 2e-54 UniRef50_Q9KBP6 Transcriptional regulator (Sigma-L-dependent) n=... 216 2e-54 UniRef50_Q2LXQ0 Response regulator with sigma 54 interaction dom... 216 2e-54 UniRef50_Q67RK7 Sigma-54-dependent transcriptional regulator n=1... 216 2e-54 UniRef50_UPI0001972FEB sigma-54 factor, interaction region n=1 T... 216 2e-54 UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional... 216 2e-54 UniRef50_B5YGW3 Acetoacetate metabolism regulatory protein AtoC ... 215 3e-54 UniRef50_A9EN62 Sigma-54 dependent transcriptional regulator n=1... 215 3e-54 UniRef50_Q81CD5 Sigma-54-dependent transcriptional activator n=3... 215 3e-54 UniRef50_A0LJL7 Two component, sigma54 specific, transcriptional... 215 3e-54 UniRef50_Q306N7 PilR2 n=17 Tax=Deltaproteobacteria RepID=Q306N7_... 215 3e-54 UniRef50_A5WGF4 Nitrogen metabolism transcriptional regulator, N... 215 4e-54 UniRef50_C1DNV1 Sigma54-dependent activator protein n=8 Tax=Gamm... 215 4e-54 UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Con... 214 4e-54 UniRef50_Q3AR86 DNA-binding protein Fis / transcriptional regula... 214 4e-54 UniRef50_Q2LRW3 Response regulator containing sigma 54 interacti... 214 5e-54 UniRef50_A8RIT6 Putative uncharacterized protein n=1 Tax=Clostri... 214 5e-54 UniRef50_C5EM87 Sigma54 specific transcriptional regulator n=1 T... 214 5e-54 UniRef50_A6CKR1 Putative uncharacterized protein n=1 Tax=Bacillu... 214 5e-54 UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Se... 214 5e-54 UniRef50_C5EWB0 Sigma-54 dependent transcriptional regulator n=1... 214 5e-54 UniRef50_A3EU11 Putative sigma54 specific transcriptional regula... 214 5e-54 UniRef50_Q1D5T0 Sigma-54 dependent DNA-binding reponse regulator... 214 5e-54 UniRef50_Q1D9F3 Sigma-54 dependent transcriptional regulator, Fi... 214 6e-54 UniRef50_A9GSC8 Sigma-54 dependent DNA-binding response regulato... 214 6e-54 UniRef50_A6LV27 Sigma54 specific transcriptional regulator, Fis ... 214 6e-54 UniRef50_B5EHD0 Two component, sigma54 specific, transcriptional... 214 7e-54 UniRef50_P17899 Transcriptional regulatory protein flbD n=24 Tax... 214 7e-54 UniRef50_B4UM36 Two component, sigma54 specific, transcriptional... 214 8e-54 UniRef50_A9VII1 PAS modulated sigma54 specific transcriptional r... 214 9e-54 UniRef50_B4UAL8 Two component, sigma54 specific, transcriptional... 214 9e-54 UniRef50_B8FD14 PAS modulated sigma54 specific transcriptional r... 214 9e-54 UniRef50_B0K4W6 GAF modulated sigma54 specific transcriptional r... 213 1e-53 UniRef50_A5D2K0 Transcriptional regulator n=2 Tax=Clostridia Rep... 213 1e-53 UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=C... 213 1e-53 UniRef50_B8FWA2 PAS modulated sigma54 specific transcriptional r... 213 1e-53 UniRef50_D2L4Q3 Two component, sigma54 specific, transcriptional... 213 1e-53 UniRef50_C6NRF1 Sigma54 specific transcriptional regulator, Fis ... 213 1e-53 UniRef50_A7GID7 Sigma-54 dependent transcriptional regulator n=1... 213 1e-53 UniRef50_P09434 Nif-specific regulatory protein n=7 Tax=Rhodobac... 213 1e-53 UniRef50_A9F816 Protein kinase n=12 Tax=Bacteria RepID=A9F816_SORC5 213 1e-53 UniRef50_A2SP83 Sigma-54 dependent transcriptional activator n=4... 213 1e-53 UniRef50_Q3A103 Two component, sigma54 specific, transcriptional... 213 1e-53 UniRef50_A9ET26 Transcriptional regulator n=2 Tax=Myxococcales R... 213 2e-53 UniRef50_A0LL20 Two component, sigma54 specific, transcriptional... 213 2e-53 UniRef50_A7JYI2 Transcriptional regulator n=10 Tax=Vibrionaceae ... 213 2e-53 UniRef50_C0GP34 Two component, sigma54 specific, transcriptional... 213 2e-53 UniRef50_Q2LQP1 Transcrption factor sigma 54 type n=4 Tax=Deltap... 212 2e-53 UniRef50_C1SMK9 Response regulator with CheY-like receiver, AAA-... 212 2e-53 UniRef50_A7GG75 Sensory box sigma-54 dependent transcriptional r... 212 3e-53 UniRef50_A5G7F8 Two component, sigma-54 specific, transcriptiona... 212 3e-53 UniRef50_A1HLP6 Sigma54 specific transcriptional regulator, Fis ... 212 3e-53 UniRef50_Q0A8W1 Two component, sigma54 specific, transcriptional... 212 3e-53 UniRef50_B5JMU1 Sigma-54 interaction domain family n=1 Tax=Verru... 212 3e-53 UniRef50_A9G869 Sigma-54 dependent DNA-binding response regulato... 212 3e-53 UniRef50_C6CDP8 Putative sigma54 specific transcriptional regula... 212 3e-53 UniRef50_C3WC69 Sigma-54 dependent transcriptional regulator n=5... 212 3e-53 UniRef50_A0LFR7 Transcriptional regulator, NifA subfamily, Fis F... 212 3e-53 UniRef50_C0QF87 Transcriptional regulator (PAS/PAC domain protei... 212 3e-53 UniRef50_Q0AWA7 Acetoin operon expression regulatory protein n=1... 212 3e-53 UniRef50_A6LV86 Sigma54 specific transcriptional regulator, Fis ... 212 3e-53 UniRef50_A8V246 Two component, sigma54 specific, transcriptional... 212 3e-53 UniRef50_A0RFE6 Sensory box sigma-54 dependent DNA-binding respo... 212 4e-53 UniRef50_B7HA57 Sensory box sigma-54 dependent DNA-binding respo... 211 4e-53 UniRef50_C0D6Q8 Putative uncharacterized protein n=1 Tax=Clostri... 211 4e-53 UniRef50_A6CEU3 Acetoacetate metabolism regulatory protein atoC ... 211 4e-53 UniRef50_Q2LUG8 Response regulator containing CheY-like receiver... 211 4e-53 UniRef50_B5YHF3 Acetoacetate metabolism regulatory protein AtoC ... 211 4e-53 UniRef50_C7PUT4 Two component, sigma54 specific, transcriptional... 211 4e-53 UniRef50_A0LH02 Transcriptional regulator, NifA subfamily, Fis F... 211 4e-53 UniRef50_C5MQI0 Putative uncharacterized protein n=1 Tax=Clostri... 211 5e-53 UniRef50_C1MAF5 Signal-transduction and transcriptional-control ... 211 5e-53 UniRef50_C8W392 Two component, sigma54 specific, transcriptional... 211 5e-53 UniRef50_B8IB91 Two component, sigma54 specific, transcriptional... 211 5e-53 UniRef50_C1PD04 Sigma54 specific transcriptional regulator, Fis ... 211 5e-53 UniRef50_C6BW44 Two component, sigma54 specific, transcriptional... 211 5e-53 UniRef50_C6MX44 Two component, sigma54 specific, transcriptional... 211 5e-53 UniRef50_B0TAR7 Sigma-54-dependent transcriptional activator (Ni... 211 6e-53 UniRef50_Q088E6 Sigma54 specific transcriptional regulator, Fis ... 211 6e-53 UniRef50_A4VJ57 Nitrogen fixation positive regulatory protein n=... 211 6e-53 UniRef50_B7DTW4 GAF modulated sigma54 specific transcriptional r... 211 6e-53 UniRef50_Q214B6 Sigma-54 factor, interaction region n=1 Tax=Rhod... 211 6e-53 UniRef50_C0GH19 Sigma54 specific transcriptional regulator, Fis ... 211 6e-53 UniRef50_B6WWW5 Putative uncharacterized protein n=1 Tax=Desulfo... 211 6e-53 UniRef50_C0QPW4 Sigma-54 specific transcriptional regulator, Fis... 211 6e-53 UniRef50_A5GDL0 Sigma-54 specific transcriptional regulator, Fis... 211 6e-53 UniRef50_A8USY5 Two component, sigma54 specific, transcriptional... 211 7e-53 UniRef50_C8SGD9 Two component, sigma54 specific, transcriptional... 211 7e-53 UniRef50_A0L4D4 Two component, sigma54 specific, transcriptional... 210 8e-53 UniRef50_Q027R3 Two component, sigma54 specific, transcriptional... 210 8e-53 UniRef50_C0Z5U4 Probable transcriptional regulator n=1 Tax=Brevi... 210 9e-53 UniRef50_Q220U8 Two component, sigma54 specific, transcriptional... 210 9e-53 UniRef50_UPI00016C4268 cetoacetate metabolism regulatory protein... 210 1e-52 UniRef50_A8MEG8 Putative sigma54 specific transcriptional regula... 210 1e-52 UniRef50_C0QG59 Response regulator n=1 Tax=Desulfobacterium auto... 210 1e-52 UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator ... 210 1e-52 UniRef50_A1HSK4 Sigma54 specific transcriptional regulator, Fis ... 210 1e-52 UniRef50_C4XT50 Fis family transcriptional regulator n=1 Tax=Des... 210 1e-52 UniRef50_B2A1V9 PAS modulated sigma54 specific transcriptional r... 210 1e-52 UniRef50_Q1IQW5 Two component, sigma54 specific, transcriptional... 210 1e-52 UniRef50_Q316Q6 Putative transcriptional regulator, Fis family n... 210 1e-52 UniRef50_C8WE21 Transcriptional regulator, NifA, Fis Family n=4 ... 210 1e-52 UniRef50_B8FXN8 Putative sigma54 specific transcriptional regula... 210 1e-52 UniRef50_A1HRA8 Sigma54 specific transcriptional regulator, Fis ... 210 1e-52 UniRef50_B8FXH0 PAS modulated sigma54 specific transcriptional r... 210 1e-52 UniRef50_D2MLD9 Two component, sigma54 specific, transcriptional... 209 1e-52 UniRef50_A8MFU8 PAS modulated sigma54 specific transcriptional r... 209 1e-52 UniRef50_C6PSK3 Putative sigma54 specific transcriptional regula... 209 1e-52 UniRef50_C6NWM8 Two component, sigma54 specific, transcriptional... 209 1e-52 UniRef50_UPI0001BC5B22 signal-transduction and transcriptional-c... 209 2e-52 UniRef50_D0MD30 Sigma54 specific transcriptional regulator, Fis ... 209 2e-52 UniRef50_Q5P3C3 Sigma-54 dependent DNA-binding response regulato... 209 2e-52 UniRef50_Q0VSC9 Sigma-54 dependent DNA-binding response regulato... 209 2e-52 UniRef50_B3QSR6 Transcriptional regulator, NifA, Fis Family n=2 ... 209 2e-52 UniRef50_D2U436 Two-component system, NtrC family, nitrogen regu... 209 2e-52 UniRef50_C5EGH7 Sigma-54 dependent transcriptional regulator n=1... 209 2e-52 UniRef50_A3WNQ8 Response regulator containing CheY-like receiver... 209 2e-52 >UniRef50_Q9ZIB7 Transcriptional regulatory protein tyrR n=263 Tax=Gammaproteobacteria RepID=TYRR_ENTAG Length = 521 Score = 769 bits (1985), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/520 (72%), Positives = 435/520 (83%), Gaps = 9/520 (1%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRR 60 MRLEVFC+DR+GL RELLDLLV R IDLRGIE+ GRIYLNF+ LEFE FS+LMAEIRR Sbjct: 1 MRLEVFCQDRIGLARELLDLLVARSIDLRGIEVAASGRIYLNFSTLEFEQFSNLMAEIRR 60 Query: 61 IAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRL 120 GVTDVRTVP+MPSEREH LSALL A+PEPV SVD+++KV++ANPA+ LF +++ Sbjct: 61 TPGVTDVRTVPYMPSEREHRVLSALLVAMPEPVFSVDLRTKVELANPAAQNLFNLDENKI 120 Query: 121 RNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQ-HVLTGAV 179 RN TA LINGFNF RWLESE + +HVVI G++FLME P+YL ++NDQ L GA+ Sbjct: 121 RNFTADHLINGFNFARWLESERVQAQAQHVVIEGRDFLMEAHPIYLSEDNDQADQLVGAM 180 Query: 180 VMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTG 239 VML+ST RMGRQLQN+ D + F IVAV+P+M+ VVEQA+KLAM APLLI GDTGTG Sbjct: 181 VMLKSTARMGRQLQNLVVTDETEFDHIVAVTPRMRQVVEQARKLAMHDAPLLIIGDTGTG 240 Query: 240 KDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAP-------EGKKGFFEQANG 292 KD+ A ACH S R P+LALNCAS+P+D ESELFGHA EGKKGFFEQANG Sbjct: 241 KDMLARACHLRSARGKMPFLALNCASLPDDVAESELFGHAAGAYPNALEGKKGFFEQANG 300 Query: 293 GSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMF 352 GSVLLDEIGEMSP MQ KLLRFLNDGTFRRVGE+HEVHV+VRVICATQKNL ELVQ+G F Sbjct: 301 GSVLLDEIGEMSPTMQTKLLRFLNDGTFRRVGEEHEVHVNVRVICATQKNLFELVQRGEF 360 Query: 353 REDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAW 412 REDL+YRLNVLTLNLPPLR+ QDIMPLTE+FVARFADEQG+PRP+L++ LN L RY W Sbjct: 361 REDLFYRLNVLTLNLPPLRERVQDIMPLTEIFVARFADEQGIPRPRLSSQLNAFLMRYNW 420 Query: 413 PGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSV 472 PGNVRQLKNA+YRALTQL+G+ELRPQDI+LP+ A V++GE+AMEG+LD+ITSRFERS+ Sbjct: 421 PGNVRQLKNALYRALTQLEGHELRPQDIVLPE-QALDVSLGEEAMEGTLDQITSRFERSI 479 Query: 473 LTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKKNE 512 LT+LY +YPSTRKLAKRLGVSHTAIANKLREYGL QK+ + Sbjct: 480 LTRLYLSYPSTRKLAKRLGVSHTAIANKLREYGLGQKRGD 519 >UniRef50_Q15RI2 Transcriptional regulator, TyrR n=12 Tax=Bacteria RepID=Q15RI2_PSEA6 Length = 518 Score = 507 bits (1306), Expect = e-142, Method: Compositional matrix adjust. Identities = 257/515 (49%), Positives = 351/515 (68%), Gaps = 7/515 (1%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRR 60 MRLE+ C+DRLG+T+++LD+LV +DLRGIEI+ +G+IYL+F ++FE F LM +IR+ Sbjct: 1 MRLEISCQDRLGITQDVLDILVSHEVDLRGIEINEMGKIYLSFPNMDFEHFQHLMPKIRK 60 Query: 61 IAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRL 120 IAG+ DV+T+P+MP ERE L ALL+ LP+PV SVD K ++ + N A + + L Sbjct: 61 IAGIDDVKTIPFMPLEREQNQLRALLQTLPDPVFSVDTKGRILLINDAVTASLETEREAL 120 Query: 121 RNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVV 180 +L+ GFN LRWLES+ S + V QN+L +I PV + D +L GAV Sbjct: 121 IGVDIDELVKGFNTLRWLESKKIASLTQKVRFIEQNYLADILPVMVPDSGGDPILAGAVF 180 Query: 181 MLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGK 240 ML+S R+G+QL + +F I A S MK VV +A+++A L P+++ G+TGTGK Sbjct: 181 MLKSEQRLGQQLTVFHEASLDSFMSIQASSKVMKKVVREAKRMAELDGPIILYGETGTGK 240 Query: 241 DLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA------PEGKKGFFEQANGGS 294 +L A+ACH+AS R +L LNCAS+P++ E+ELFG+A GK+G E A GGS Sbjct: 241 ELIAHACHEASRRKDASFLVLNCASLPDNVAETELFGYAAGAFGQSTGKEGLLELAQGGS 300 Query: 295 VLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFRE 354 + LDE+G+MSP++QAKLLR L DG FRRVG+ EV VDVR IC TQK+L +LVQ+G FRE Sbjct: 301 LFLDEVGDMSPQLQAKLLRVLQDGKFRRVGDTKEVKVDVRFICTTQKDLAQLVQEGRFRE 360 Query: 355 DLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPG 414 DLYYRLNVL+L +PPLR+ DI+PL E F+ + + G PKL + Y W G Sbjct: 361 DLYYRLNVLSLGIPPLRERKMDIIPLAETFLKQHSLTLGRKVPKLTKSCVDYIQAYPWFG 420 Query: 415 NVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLT 474 NVRQL+N +YRA++ L+G EL + I +P A V ED +GSLDE RFE+S+L Sbjct: 421 NVRQLENVLYRAVSLLEGNELGKEHIQIPSSANAMSFVTED-FDGSLDEEVKRFEKSILQ 479 Query: 475 QLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQK 509 +LY +YPS+R LAK+LG+SHTAIANKLR+YG+++K Sbjct: 480 RLYPSYPSSRLLAKKLGLSHTAIANKLRDYGINKK 514 >UniRef50_B4RUH9 Transcriptional regulatory protein tyrR n=6 Tax=Gammaproteobacteria RepID=B4RUH9_ALTMD Length = 518 Score = 499 bits (1286), Expect = e-140, Method: Compositional matrix adjust. Identities = 245/514 (47%), Positives = 350/514 (68%), Gaps = 7/514 (1%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRR 60 MRLE+ C+DRLG+T+++LD+LV + IDLRGIEIDP G+I+LNF +EF F LM +IRR Sbjct: 1 MRLEISCQDRLGITQDVLDILVTKEIDLRGIEIDPAGKIFLNFPNIEFADFQHLMPQIRR 60 Query: 61 IAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRL 120 I G+ DV+T +MP ERE LSA+L LP+PV S+D K + + N A + Sbjct: 61 IDGIDDVKTTLFMPGEREKNQLSAILRTLPDPVFSIDAKGNIVLCNEAVSAGLEMPTSDI 120 Query: 121 RNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVV 180 ++++ GFNF +W++ + + V Q++L ++ P+ + D + ++ GAVV Sbjct: 121 EGTEISEVVKGFNFTKWMDGKSPGPQSSKVKFIQQDYLADMLPITVPDGDKNMIMAGAVV 180 Query: 181 MLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGK 240 +L+S +R+G+Q +F + +A SP MK VV +A+++A L AP+LI G+TGTGK Sbjct: 181 ILKSEMRLGQQFTAFHQSPTDSFDRFIAQSPFMKRVVHEAKRIADLDAPILIFGETGTGK 240 Query: 241 DLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA------PEGKKGFFEQANGGS 294 ++ A ACHQ+S R+ +LALNCAS+P+ E+ELFG+A P K G EQA GG+ Sbjct: 241 EMIARACHQSSRRSEGAFLALNCASLPDSVAETELFGYAAGAFNQPNAKVGLLEQAKGGT 300 Query: 295 VLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFRE 354 +LLDEI +MS ++QAKLLR L DG FRRVG+ V VDVR IC T ++L +LV++G FR+ Sbjct: 301 LLLDEIADMSSQLQAKLLRVLEDGEFRRVGDAEPVKVDVRFICTTCRDLGQLVEEGRFRK 360 Query: 355 DLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPG 414 +LYYRLNVL+L +P L+D QDI+PL E F+ + + + G KL+ L +Y WPG Sbjct: 361 ELYYRLNVLSLVMPSLKDRRQDIVPLAESFIVQHSTKLGRRPAKLSKSCVDFLQQYPWPG 420 Query: 415 NVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLT 474 NVRQL+NA+YRAL+ LDG E+ +DI LP A +V ++ EG+LDE +FE+ +L Sbjct: 421 NVRQLQNALYRALSLLDGKEITKEDIQLPSC-APSVTYIDENFEGTLDEEVKKFEKDLLK 479 Query: 475 QLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQ 508 +LY +YPSTR+LAK+LG+SHTAIANKLREYG+++ Sbjct: 480 RLYPSYPSTRQLAKKLGLSHTAIANKLREYGINK 513 >UniRef50_Q12L04 Transcriptional regulator, TyrR n=3 Tax=Shewanella RepID=Q12L04_SHEDO Length = 512 Score = 486 bits (1250), Expect = e-135, Method: Compositional matrix adjust. Identities = 248/515 (48%), Positives = 342/515 (66%), Gaps = 8/515 (1%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRR 60 MRLEV C DR+GL +++L +L GI+L I+ G +YL FAE+ FE+ LM IR+ Sbjct: 1 MRLEVSCIDRVGLAKDILVILERYGINLIAIDASNRGFLYLQFAEISFETLRELMPLIRK 60 Query: 61 IAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRL 120 + V DVRTV +MPSE+EH AL LL+ LP+ V S++ K ++ + N ++ + Sbjct: 61 VESVHDVRTVSFMPSEQEHYALKTLLQTLPDSVFSINAKGRIRIVNESALLTLSMAEHEV 120 Query: 121 RNHTAAQLINGFNFLRWLESEPQD-SHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAV 179 + + + GFNF RWL SEPQ + V I +L E+ P+YL DEND +L GAV Sbjct: 121 LDESLNHWVQGFNFGRWL-SEPQVLAQATRVTIGTNEYLAEMLPIYLPDENDSQILAGAV 179 Query: 180 VMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTG 239 V L+S R+G+Q N + F ++A+S KMK V++QA+++A L APLLITG+TGTG Sbjct: 180 VSLKSPARVGKQF-NALQNQTTGFESVLAMSDKMKDVLKQARRMAQLDAPLLITGETGTG 238 Query: 240 KDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPEG---KKGFFEQANGGSVL 296 K+L A A H AS R KP++A+NCA++P+ A E ELFG +G K+G FE+A+GG+V Sbjct: 239 KELMARASHDASMRREKPFIAINCAALPDSAAEEELFGFVNQGTVVKRGLFEEASGGTVY 298 Query: 297 LDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDL 356 LDEI EMS Q KLLRFL DG FRR+G D EV DVR+IC+TQKNL EL Q FREDL Sbjct: 299 LDEIAEMSKTAQVKLLRFLQDGCFRRIGGDEEVRADVRIICSTQKNLAELCQTDEFREDL 358 Query: 357 YYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNV 416 YYR++VL+ ++P LR+ D++PLTE+F+ ++ + P +++A L YAWPGNV Sbjct: 359 YYRIHVLSYHMPALRERKVDVIPLTEMFLEHYSQQLSSPLRRISASCRDYLFSYAWPGNV 418 Query: 417 RQLKNAIYRALTQLDG-YELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQ 475 RQLKNA++RA++ DG EL + + LP Y A ++ EGSLD+ +E +L + Sbjct: 419 RQLKNAVFRAVSMWDGATELTVEQLKLPSY-AEGFGYFDEEFEGSLDDAMKEYEAGLLRR 477 Query: 476 LYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKK 510 LY YPSTR+LAK+LGVSHTAIANKLR+Y + +K+ Sbjct: 478 LYPAYPSTRQLAKKLGVSHTAIANKLRDYQIVKKR 512 >UniRef50_A6FE33 Sigma-54 dependent transcriptional regulator TyrR n=1 Tax=Moritella sp. PE36 RepID=A6FE33_9GAMM Length = 522 Score = 473 bits (1216), Expect = e-132, Method: Compositional matrix adjust. Identities = 238/525 (45%), Positives = 342/525 (65%), Gaps = 19/525 (3%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRR 60 MRLE+ CEDR+G++RE+LD + R I+L IEI RI++ LEF +LMA +RR Sbjct: 1 MRLELVCEDRVGISREILDCFLARDINLSAIEIQQPDRIFIKSPNLEFSDLQALMANLRR 60 Query: 61 IAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRL 120 I+GV DV+TV ++PSE EH + L+ LP+ V SVD+K V + N + G ++ Sbjct: 61 ISGVCDVKTVSYLPSELEHQEIQTLMTNLPDIVFSVDVKGLVSLVNTPALTALGLLESQV 120 Query: 121 RNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQ-------- 172 + H + + GF+ +WLESE + + + + ++F +I P+ + + +Q Sbjct: 121 KGHCISNFVKGFSITKWLESEEVCAQTQKLTLLDEDFFGDILPLSISSDVNQVTLSKAAV 180 Query: 173 ----HVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSA 228 H L GAV++L+S R+G+Q + +AF +I A S KM ++ A+K A+L A Sbjct: 181 SVKPHELVGAVIILKSVDRIGKQFNFLRTFQFAAFDEIFAKSDKMNKLINTAKKFAILDA 240 Query: 229 PLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAP---EGKKG 285 PL+I G+TG GK+L A ACHQAS R+ +LALNCA++P+ ESELFG E K+G Sbjct: 241 PLMILGETGAGKELIAKACHQASGRSQHQFLALNCAAVPDAVAESELFGVVTDDGETKRG 300 Query: 286 FFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVE 345 FE AN GSVLLDEIG+MSP +Q K LR L G FRRVG++ EV VDVR+IC TQ +L + Sbjct: 301 IFELANEGSVLLDEIGDMSPYLQTKFLRLLETGCFRRVGDEQEVRVDVRIICTTQNDLAK 360 Query: 346 LVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNT 405 L+ +G FR+DLYYRLNVL++ +P LR+ +DI+PL F + F+ E +P+L+ ++ Sbjct: 361 LISEGKFRQDLYYRLNVLSMTVPALRERKEDIIPLCHSFCSVFSHELQRTKPQLSRNVLE 420 Query: 406 VLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAM-EGSLDEI 464 +L Y WPGNVR+L+N +Y AL+ L+G L P D+ + A T ++A+ +GSLDE Sbjct: 421 LLQSYPWPGNVRELRNVLYHALSLLEGDVLNPCDL---NLSATTTETYDEALFDGSLDEA 477 Query: 465 TSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQK 509 RFE+ +L +LY +YPSTR+LAKRLGVSHTAIANKLR+Y +++K Sbjct: 478 CKRFEKLLLQRLYPSYPSTRQLAKRLGVSHTAIANKLRDYKITKK 522 >UniRef50_UPI0000E0E363 sigma-54 dependent transcriptional regulator TyrR n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0E363 Length = 518 Score = 468 bits (1203), Expect = e-130, Method: Compositional matrix adjust. Identities = 235/515 (45%), Positives = 340/515 (66%), Gaps = 9/515 (1%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRR 60 MRLE+ C+DRLG+ +++L+LL IDLRGIEI+ G+IYL+F +EF F M +IRR Sbjct: 1 MRLEISCQDRLGIAQDVLELLKAHEIDLRGIEINEAGKIYLSFPTIEFTDFQQFMPKIRR 60 Query: 61 IAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRL 120 I G+ DV+T +MP ERE L A+++ +P+PV S+D K ++ + N A+ ++ L Sbjct: 61 IEGIDDVKTTLFMPIERERNELKAIIQTMPDPVFSIDTKGRIVLFNDAAKFSVDNDINAL 120 Query: 121 RNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVV 180 + + GF F +WLES+ + + V Q+++ +I P+ + D +D+ +L GAVV Sbjct: 121 IKADIEEWVEGFKFEKWLESKETFAQTQKVKFVEQDYIADILPITVADNDDEEILAGAVV 180 Query: 181 MLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGK 240 +L+S +R+G+Q ++ +F + AVSP M VV +A ++A L P+LI G+TGTGK Sbjct: 181 ILKSELRLGQQFNTFHQKETDSFDKFHAVSPAMCKVVNEASRMADLDGPILIFGETGTGK 240 Query: 241 DLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPEG-------KKGFFEQANGG 293 +L A ACH+AS R P L LNC + +D +E+ELFG EG + G +A GG Sbjct: 241 ELIARACHEASSREEAPLLMLNCTANTDDIIETELFG-TIEGSFGTQILRDGLLVKAQGG 299 Query: 294 SVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFR 353 ++LLDEI +MS +Q+KLLR + DG FRR G++ + VDVR+IC T K+L LV+ G FR Sbjct: 300 TLLLDEIADMSAYLQSKLLRVIEDGEFRRSGDEAPIPVDVRIICTTSKDLGLLVESGRFR 359 Query: 354 EDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWP 413 +DLYYRLNVL+L +P LR+ QDI+PLTE F+ + G KL+ L Y WP Sbjct: 360 QDLYYRLNVLSLVMPALRERKQDIIPLTESFIKEHCIKLGRNVAKLSKSCVDYLNTYPWP 419 Query: 414 GNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVL 473 GNVRQL+NA+YRALT L+G E+ + I LP A TV+ ++ EG+LDE +FE+ +L Sbjct: 420 GNVRQLQNALYRALTLLEGNEITKEHIHLPSC-ATTVSYIDENFEGTLDEEVKKFEKDLL 478 Query: 474 TQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQ 508 +LY +YPSTR+LA++LG+SHTAIANKLREYG+++ Sbjct: 479 RKLYPSYPSTRQLARKLGLSHTAIANKLREYGINK 513 >UniRef50_Q2FA16 TyrR n=1 Tax=Vibrio sp. DAT722 RepID=Q2FA16_9VIBR Length = 460 Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust. Identities = 220/458 (48%), Positives = 307/458 (67%), Gaps = 7/458 (1%) Query: 55 MAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFG 114 MAEIRRI+GV DVR + +MP ER + L +L++ LP+PV ++D+K VDMAN A+ L G Sbjct: 1 MAEIRRISGVKDVRKIQFMPMERHNTELLSLVDNLPDPVFAIDLKGAVDMANMAALSLLG 60 Query: 115 QKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHV 174 Q + L+ F RW E + E +VI+G ++++E+ PVY++DE Sbjct: 61 QHKQDVIGTQIGTLLPSVRFSRWSEGVNARTR-ESLVIDGLDYILELMPVYIKDEAQNST 119 Query: 175 LTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITG 234 L ++ +RS+ + + + + + F V +S + + ++ QA+KL++L PLLI G Sbjct: 120 LASTLMTIRSSQQGSQIEETLPLHNQLGFEHFVGLSNRHRALINQAKKLSVLDQPLLIEG 179 Query: 235 DTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAP------EGKKGFFE 288 +TGTGK++ A ACH S RA KP+L L+CAS+P+D E+ELFGHAP +G KG FE Sbjct: 180 ETGTGKEMLAKACHSRSGRASKPFLVLSCASMPDDVAETELFGHAPGSFNHEQGHKGIFE 239 Query: 289 QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQ 348 QANGG+V LDEIGEMS +Q KLLRFL DG FRRVG + E+HVDVR+I +T+ NL EL + Sbjct: 240 QANGGTVFLDEIGEMSSHLQIKLLRFLQDGNFRRVGAEDEMHVDVRIIASTKHNLAELAE 299 Query: 349 KGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLT 408 G FREDLYYRLNVLTLN+PPLR D+ PL +LFV + A + G+ +P+L +L L Sbjct: 300 AGKFREDLYYRLNVLTLNIPPLRKRSNDVAPLLDLFVTKHAQQLGIDKPELDEELVDALA 359 Query: 409 RYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRF 468 Y WPGN+RQL N + RALT++DG+ L+ ++ LP A ++GSLDEI + Sbjct: 360 NYQWPGNMRQLDNMVLRALTEMDGHVLKAENFNLPQPQAMGGTSTTLNLDGSLDEIMRDY 419 Query: 469 ERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 E +L +LY+++PS+RKLAKRL VSHT+IANKLR+YG+ Sbjct: 420 ESQILERLYQSFPSSRKLAKRLNVSHTSIANKLRDYGI 457 >UniRef50_Q48G07 Transcriptional regulator PhhR n=28 Tax=cellular organisms RepID=Q48G07_PSE14 Length = 526 Score = 408 bits (1048), Expect = e-112, Method: Compositional matrix adjust. Identities = 228/522 (43%), Positives = 323/522 (61%), Gaps = 17/522 (3%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEI--DPIGRIYLNFAELEFESFSSLMAEI 58 MR++V C++R+G+ R++LDLLV G+++ E+ + IYL+ L F +L + Sbjct: 1 MRIKVHCQNRIGILRDILDLLVAYGVNVARGEVGGEHGDAIYLHCPNLINLQFQALRPKF 60 Query: 59 RRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLD 118 I GV V+ V MPSER H+ L+ALL AL PVLS+DM + AN A+ QL G ++D Sbjct: 61 EAITGVFGVKRVGLMPSERRHMELNALLGALEFPVLSIDMVGAIVAANRAAAQLLGVRVD 120 Query: 119 RLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDE-NDQHVLTG 177 + ++ F+ + + + V + G FL +I P LQ E +D + G Sbjct: 121 EVPGMPLSRYAEDFDLPELVRASQSRINGLRVKVRGDVFLADIAP--LQSEHDDSEAMAG 178 Query: 178 AVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTG 237 AV+ L R+G ++ NV Q++ Q S M VV +A+++A L APLLI G+TG Sbjct: 179 AVLTLHRADRVGERIYNVRKQELRGIFQ---SSKVMAAVVREARRMAPLDAPLLIEGETG 235 Query: 238 TGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAP--------EGKKGFFEQ 289 TGK+L A ACH ASPR P +ALNCA + E E ELFG+ P EG+ G E Sbjct: 236 TGKELLARACHLASPRGQSPLMALNCAGLSESMAEIELFGYDPGAFEGARAEGRLGLLEL 295 Query: 290 ANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQK 349 GG++ LD +GE+S RMQAKLLRF+ DG+FRRVG D ++ +DVRV+C+TQ L EL + Sbjct: 296 TAGGTLFLDGVGELSARMQAKLLRFIQDGSFRRVGSDEDMFLDVRVMCSTQVELSELCAQ 355 Query: 350 GMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTR 409 G+FR+DLY+RLNVL+L++PPLRDC + PL E F+ + + G P P +A L++ Sbjct: 356 GVFRQDLYHRLNVLSLHIPPLRDCLDGLEPLVEHFLDHASRQIGCPLPGIAPAAIKRLSQ 415 Query: 410 YAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFE 469 Y WPGNVRQL+N +++A++ DG +++ + I LPDY + + ++EG LD I RFE Sbjct: 416 YHWPGNVRQLENVLFQAVSLCDGSKVQAEHIRLPDY-GVRPGLSDVSLEGGLDAIIGRFE 474 Query: 470 RSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKKN 511 +SVL LY YPS+R+L KRLGVSHT IANKLR Y L ++ Sbjct: 475 KSVLEHLYAQYPSSRQLGKRLGVSHTTIANKLRGYELGRESG 516 >UniRef50_A3Y5W7 Transcriptional regulatory protein n=1 Tax=Marinomonas sp. MED121 RepID=A3Y5W7_9GAMM Length = 514 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 211/523 (40%), Positives = 314/523 (60%), Gaps = 28/523 (5%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEID-PIGRIYLNFAELEFESFSSLMAEIR 59 M+L + C DR G+ +++LD+L + IDL GIEI+ G +L+ ++ S ++MAEIR Sbjct: 1 MQLAIACTDRTGIAQDVLDILAHQDIDLTGIEINHEQGGFFLSTEQVALASMQTVMAEIR 60 Query: 60 RIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDR 119 ++ GV DV+T ++P L + + L EP+ S+D+ K M+N A+ LF L++ Sbjct: 61 KVEGVKDVKTTSYLPMSHSLYELENITDQLNEPLFSMDLNGKRVMSNQAANTLFSWPLEK 120 Query: 120 LRNHTAAQLINGFNFLRWLESEPQDSH--NEHVVINGQNFLMEITPVYLQDENDQHVLTG 177 ++ I+ L+ E Q H +++ N + FL EI + Q + D H L Sbjct: 121 TKHK-----IDCLALLQLTELPSQYGHPSYQNLQFNQRPFLAEIRLIQ-QKQLDSHYL-- 172 Query: 178 AVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTG 237 V L S + L + V+ + AVS KM+ +++ APLLI+G+TG Sbjct: 173 --VRLLSPKYLSNCLHQAQSNPVNP-EPLQAVSLKMRKLLKVIDVATRSEAPLLISGETG 229 Query: 238 TGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAP--------EGKKGFFEQ 289 TGKDL A H R + +L L+CA++P++ E+ELFGHAP EGKKG + Sbjct: 230 TGKDLLATMSHNQGSRKEQAFLVLSCATLPDNVAENELFGHAPFAFSNEDEEGKKGLLQL 289 Query: 290 ANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQK 349 A+ G++ LDE+G+MS +Q KLLRFL G FRRVG++ E+ VDVR+ICATQ ++++ VQ Sbjct: 290 ADKGTLYLDEVGDMSAILQVKLLRFLEQGKFRRVGDEKEIQVDVRIICATQHDILDKVQS 349 Query: 350 GMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTR 409 G FR+DLYYRLNVL++NLPPLR+ +DI+PL E FV F EQG P L+ D L Sbjct: 350 GEFRQDLYYRLNVLSVNLPPLRERKEDIIPLAEHFVHTFCAEQGKPALSLSEDCCQALIN 409 Query: 410 YAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDY----DAATVAVGEDAMEGSLDEIT 465 Y WPGNVRQLKN + +++ + +D+ LP Y D + + E EGSL++ Sbjct: 410 YPWPGNVRQLKNVLLPSVSMAQNTLIDAKDLALPQYQPTQDVQKLNLTE--FEGSLEQAM 467 Query: 466 SRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQ 508 ++E +L L+ +YPS+R LAK+LG+SHTAIANKL+E+G+++ Sbjct: 468 KQYECQLLKSLFPSYPSSRLLAKKLGLSHTAIANKLKEHGINK 510 >UniRef50_B1JB99 Sigma-54 factor interaction domain-containing protein n=22 Tax=Pseudomonadaceae RepID=B1JB99_PSEPW Length = 531 Score = 368 bits (944), Expect = e-100, Method: Compositional matrix adjust. Identities = 214/518 (41%), Positives = 299/518 (57%), Gaps = 24/518 (4%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRR 60 MR+ V DR+G+T+E+L LL R ++L +E+ P +Y++ L L + Sbjct: 29 MRIHVSFIDRVGITQEVLALLGARNLNLDAVEMVP-PNVYIDAPTLSPAVLEELHDALFE 87 Query: 61 IAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRL 120 + GV V V +P +R HL L ALL A+ +PVL+VD V +ANPA L G++ Sbjct: 88 VHGVQSVDVVDILPGQRRHLQLDALLAAMSDPVLAVDSAGLVLLANPALIALCGRES--- 144 Query: 121 RNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVV 180 + +L L+ L + +NGQ+ L++ TP+ G ++ Sbjct: 145 AGRSVGELFGDPGLLQALLDNNFHLPMREMQLNGQSLLLDATPI---------TNAGGLL 195 Query: 181 MLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGK 240 L RMG +L + F ++ SP ++ + +A ++A L APLL+ G+TGTGK Sbjct: 196 TLYPPNRMGERLSALHHDHAEGFDALLGESPAIRTLKARALRVAALDAPLLVHGETGTGK 255 Query: 241 DLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGFFEQANG 292 +L A ACH S R P+LALNCA++PE ESELFG+AP GK G E AN Sbjct: 256 ELVARACHAISSRQAAPFLALNCAALPESLAESELFGYAPGAFTGAQRGGKPGLMELANQ 315 Query: 293 GSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMF 352 G+V LDEIGEMSP +QAKLLRFL+DG+FRRVG D EV VDVR+I AT ++L +V +G F Sbjct: 316 GTVFLDEIGEMSPYLQAKLLRFLSDGSFRRVGGDREVKVDVRIISATHRDLERMVAEGTF 375 Query: 353 REDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAW 412 REDL+YRLNVL L +PPLRD QDI+ L F+ + + P +L ++ L W Sbjct: 376 REDLFYRLNVLNLQVPPLRDRGQDILMLAHYFMQQACTQIQRPACRLTPATHSALLANPW 435 Query: 413 PGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSV 472 PGNVRQL+N I+RA + + D+ D +VA G+D SL++ FER + Sbjct: 436 PGNVRQLQNVIFRAAAICESNLVDIGDL---DIAGTSVARGQDGEVASLEQAVGDFEREL 492 Query: 473 LTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKK 510 L +LY +YPSTR+LA RL SHTAIA +LR+YG+ + K Sbjct: 493 LQRLYASYPSTRQLAGRLQTSHTAIAQRLRKYGIPKAK 530 >UniRef50_A3YA14 Sigma-54 dependent transcriptional regulator n=1 Tax=Marinomonas sp. MED121 RepID=A3YA14_9GAMM Length = 529 Score = 325 bits (833), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 194/539 (35%), Positives = 301/539 (55%), Gaps = 44/539 (8%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRR 60 MRLE+ DR+G+++E+L + D+R +E+ G Y++ E ++ + ++ ++ Sbjct: 1 MRLEIRSNDRIGISQEILHIFSKSACDIRAMEV-VTGVTYVHVNE-SYQDSAKIIEQLYL 58 Query: 61 IAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRL 120 + GV + V MP+ER L+ALL +P+P++ +D + + N A+ L LDR Sbjct: 59 VQGVLSCQEVALMPAERRENHLTALLNRIPDPIIDLDENACILALNHAAIAL----LDRP 114 Query: 121 RNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVV 180 IN F L+ + ++ ++ + ++ EI+PV ++ + + GA++ Sbjct: 115 DETLEGLSINTFTDQNLLQGLGANLSSQSILFKQKAYMAEISPVLMEGK-----VRGALL 169 Query: 181 MLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGK 240 MLR+ +GRQ+ + +Q QI+ S ++ + +Q ++ A L P+LI G+TGTGK Sbjct: 170 MLRNMNSLGRQMSLMQSQKEQGLEQIIGESETVQLLKQQTRRFAQLQLPVLIQGETGTGK 229 Query: 241 DLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGFFEQANG 292 +L A HQ S + +LALNCAS+PE +ESELFG+A GK G E A+G Sbjct: 230 ELIARGLHQESEQRESAFLALNCASLPEHLLESELFGYASGAFTGAKKGGKPGLLELADG 289 Query: 293 GSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMF 352 G++ LDE+ EMS +QAKLLRFL D FRRVG HE+ V+VR+I AT ++L +L++ G F Sbjct: 290 GTLFLDEVAEMSIYLQAKLLRFLQDFRFRRVGGSHEISVNVRIISATHQDLQQLIETGRF 349 Query: 353 REDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAW 412 R DLYYR+NVL L LPPLR DI+ L + F+ A + +P PK++ L Y+W Sbjct: 350 RADLYYRINVLNLVLPPLRQRGDDILLLVKHFIHSAARQVDMPTPKISESALARLKAYSW 409 Query: 413 PGNVRQLKNAIYRALTQLDGYELRPQDI---------------LLPDYDAATV------A 451 PGN+RQL+N ++R + G L ++I PD + + Sbjct: 410 PGNIRQLQNLLFRIVALNRGEWLSDKEINESLNLTFASASKQDHQPDANLSVTPEVPLDK 469 Query: 452 VGEDAMEG----SLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 V +D +E S + FE S+L LY YPSTRKLAKRLGVSH +A KL+++ + Sbjct: 470 VFDDVIENENLVSWAGAQANFEASLLNHLYPLYPSTRKLAKRLGVSHNKVALKLKQHNI 528 >UniRef50_Q484S1 Sigma-54 dependent transcriptional regulator n=1 Tax=Colwellia psychrerythraea 34H RepID=Q484S1_COLP3 Length = 532 Score = 320 bits (819), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 187/540 (34%), Positives = 308/540 (57%), Gaps = 43/540 (7%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDP-IGRIYLNFAELEFESFSSLMAEIR 59 MR+ + DR+G+++E+L + + +L+ +EI +++ +A L S +A + Sbjct: 1 MRVVIESSDRIGISQEILAIFAKQAWNLKTVEITSCFTYVHVEYAALTLSSIRECLASV- 59 Query: 60 RIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDR 119 GV V + +PSE+ L ALL+ +PEP++ VD + N AS KL Sbjct: 60 --IGVNSVEVINLLPSEQRESHLQALLDKMPEPIIDVDSNGLILAMNKAS-----HKLKP 112 Query: 120 LRNHTAAQLINGFNFLRWLES---------EPQDSHNEHVVINGQNFLMEITPVY----- 165 ++ T +L+ + +E+ + ++ V I G+ ++++++PV Sbjct: 113 SKDATEPELVTTDYLGKPIEAFLGQINKTMLTNAATSQAVTIEGRAYILDVSPVISSNSS 172 Query: 166 -LQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLA 224 L+ +N V +G+V++ RS +GRQ+ + + +F I+ S + + Q+++ A Sbjct: 173 TLEQDNTGQV-SGSVLLFRSMNTLGRQISLMQSHQDHSFDSIIGQSKSISLIKAQSKRFA 231 Query: 225 MLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--- 281 L P+LI+G+TGTGK+L A A HQAS R+ P+LA+NC+++PE +ESELFG+A Sbjct: 232 ELDLPVLISGETGTGKELIARALHQASSRSKAPFLAINCSALPEHLLESELFGYASGAFT 291 Query: 282 -----GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVI 336 GK G E A GG + LDEI EMSP +QAKLLRFL D T+RRVG E+ ++R++ Sbjct: 292 GAQKGGKPGLIELAEGGCLFLDEIAEMSPYLQAKLLRFLQDLTYRRVGGTKELVANIRIV 351 Query: 337 CATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFA------D 390 A+ ++L +L+ + FREDLYYRLNVL+++LPPLR+ D+ L LF+ A Sbjct: 352 SASHQDLAKLISQKTFREDLYYRLNVLSIDLPPLRERMADMSLLANLFIENAAKQVSNSQ 411 Query: 391 EQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDIL-LPDYDAAT 449 + + +PKL A ++L +AWPGN+RQL+N ++ + +G ++ D+L + + A Sbjct: 412 QTDIAKPKLTAQALSLLQGFAWPGNIRQLQNVLFSVVALNNGGDICADDLLQVLNKHAGK 471 Query: 450 VAVGEDAMEGSLDEITSR---FERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 + D ++ + +S FE +L L+ +P+TRKLA+RL VSH IA KLRE+G+ Sbjct: 472 QQLSNDIDIQTIKDWSSAQADFEAKLLEHLHPLFPTTRKLAERLNVSHNKIAMKLREHGI 531 >UniRef50_Q3AAC4 Sigma-54 dependent transcriptional regulator n=2 Tax=Clostridia RepID=Q3AAC4_CARHZ Length = 516 Score = 306 bits (784), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 174/522 (33%), Positives = 303/522 (58%), Gaps = 25/522 (4%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRR 60 ++L + EDR+GL ++ ++ R +++ ++ P GR++L + + ++ ++ +++ Sbjct: 4 IKLSLDFEDRVGLVLDVSRVISARNLNIITFQVLP-GRMFLEIEKTDKKTLKQIIDDLKN 62 Query: 61 IAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRL 120 I V V + MP E++ L A+L+ + E ++++D + + N + ++FG ++R+ Sbjct: 63 IPKVLKVHPIEIMPYEQKEQQLRAVLDTVNEGIIAIDSHGTISICNQSCAEIFGIPVERV 122 Query: 121 RNHTAAQLI-NGFNFLRWLESEPQDSHNEHVVINGQ----NFLMEITPVYLQDENDQHVL 175 +L+ N L+ L++ + +N+ ++IN + ++L P+ + N + Sbjct: 123 IGQNVGKLLANDIPMLKTLKT-GESYNNQEIIINVEGRRLHYLTSGRPIKDRLGN----I 177 Query: 176 TGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGD 235 G V +L+ + + + +++F+ I+ S KM+ VVE A+K+A +LI G+ Sbjct: 178 VGVVAVLKPMSEVRELVYALTKPSLNSFNDIIYTSEKMRFVVEMAKKVARTDTTVLIRGE 237 Query: 236 TGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFF 287 +GTGK+LFA A H SPR KP++ LNCA++PE +ESELFG+ GK+G Sbjct: 238 SGTGKELFARAIHLESPRRTKPFVPLNCAAVPESLLESELFGYVEGAFTGAKKGGKQGLL 297 Query: 288 EQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELV 347 E A+ G++ LDEI E+ +QAKLLR L +G RR+G E+ VD+R+I AT +NL +V Sbjct: 298 EFAHEGTLFLDEIAELPTHLQAKLLRVLQEGKVRRIGGQEEIPVDIRIIAATNRNLEGMV 357 Query: 348 QKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVL 407 ++G FREDLY+RLNV L +PPLR+ +DI LT F+ FA +G+ ++ + L Sbjct: 358 REGKFREDLYFRLNVFPLQIPPLRERVEDIEVLTYHFLNTFAKRRGIQYFEITENALNKL 417 Query: 408 TRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSR 467 Y+WPGNVR+L+N I RALT D + +DI+L D T V +L+E ++ Sbjct: 418 KAYSWPGNVRELQNVIERALTLADDGVIEAKDIIL-DNPQNTYFVAR-----TLEEAVNQ 471 Query: 468 FERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQK 509 E+ ++ + + YPS R+ A+ LGV+HT + NK+++ L+ K Sbjct: 472 VEKELIERALKQYPSIRQAARSLGVTHTTLRNKIKKLKLTNK 513 >UniRef50_P44694 Transcriptional regulatory protein tyrR n=31 Tax=Pasteurellaceae RepID=TYRR_HAEIN Length = 318 Score = 285 bits (729), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 148/308 (48%), Positives = 200/308 (64%), Gaps = 3/308 (0%) Query: 203 FSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALN 262 F + S MK VE A++ AM APLLI G+TG+GKDL A ACH S R K ++A+N Sbjct: 12 FECFIVQSEAMKSAVENAKRFAMFDAPLLIQGETGSGKDLLAKACHYQSLRRDKKFIAVN 71 Query: 263 CASIPEDAVESELFGHAPEGKK--GFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTF 320 CA +P++ ESE+FG + GFFE AN G+VLLD I E+S +QAKLLRFL DG+F Sbjct: 72 CAGLPDEDAESEMFGRKVGDSETIGFFEYANKGTVLLDGIAELSLSLQAKLLRFLTDGSF 131 Query: 321 RRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPL 380 RRVGE+ E + +VRVIC +Q L LV++G R DL++RLNVLT+N+P LRD DI PL Sbjct: 132 RRVGEEKEHYANVRVICTSQVPLHLLVEQGKVRADLFHRLNVLTINVPALRDRMADIEPL 191 Query: 381 TELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDI 440 + F+ ++E + +P D L +Y W GNVR+L N +YRA + + L + + Sbjct: 192 AQGFLQEISEELKIAKPTFDKDFLLYLQKYDWKGNVRELYNTLYRACSLVQDNHLTIESL 251 Query: 441 LLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANK 500 L +A +++ E + +LDEI +E VL Y YPSTRKLA+RLGVSHTAIANK Sbjct: 252 NLALPQSAVISLDEFENK-TLDEIIGFYEAQVLKLFYAEYPSTRKLAQRLGVSHTAIANK 310 Query: 501 LREYGLSQ 508 L++YG+ + Sbjct: 311 LKQYGIGK 318 >UniRef50_B2A3R3 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A3R3_NATTJ Length = 541 Score = 281 bits (718), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 173/545 (31%), Positives = 288/545 (52%), Gaps = 53/545 (9%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESF--SSLMAEI 58 R +V DR+G+ ++L ++ L+ I++ +E+ P L + +L+F +L + + Sbjct: 4 FRYQVQTVDRVGMVLDVLRVVYLKNINITAMEVAP----QLIYLKLDFAPAMKGALESAV 59 Query: 59 RRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLD 118 + I GV + + +P E + L +L+ + E ++++D + M NP++ ++ + Sbjct: 60 KEIPGVRGIDEISLLPQEEKEQKLRGILDTIGEGIIALDKSGIITMINPSAEKILNLSEN 119 Query: 119 ----RLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVIN----GQNFLMEITPVYLQDEN 170 +R+ +A+L L+ L S +D N+ + + ++L P+ +N Sbjct: 120 IEGRDIRDILSAEL----PILKTL-SAGEDYDNKEIFVTLPGGKSHYLTSGRPI----KN 170 Query: 171 DQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPL 230 D GAV ++ + + + + + +F I+A S M + A+K+A + + Sbjct: 171 DDGNTVGAVAAIKDINEVRKLVHRITHPTMLSFDDIIAESSIMNETISFAKKIAHGDSTV 230 Query: 231 LITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH--------APEG 282 L+TG++GTGK+LFA A H SPR P++ LNCA+IPE +ESELFG+ G Sbjct: 231 LLTGESGTGKELFARAIHMESPRKDCPFVPLNCAAIPETLMESELFGYEEGAFTGAKKGG 290 Query: 283 KKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKN 342 K G FE AN G+V LDEIG ++P++Q KLLR L + RR+G E+ VD+RVI AT N Sbjct: 291 KHGLFELANKGTVFLDEIGNLNPQLQVKLLRVLQEREVRRIGGKEEISVDIRVITATNHN 350 Query: 343 LVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAAD 402 L +LV +G FREDLYYRLNV+ + LPPLR+ +DI+PL + + G + +L+ Sbjct: 351 LEKLVNEGYFREDLYYRLNVIPIKLPPLRNRKEDIIPLANHILGQMRTNHG-GQYQLSPK 409 Query: 403 LNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGE-------- 454 +L Y+WPGNVR+L+N I RA+ + + + + D + GE Sbjct: 410 SRELLKTYSWPGNVRELENIIERAVNLANDNIIEGEHLFFGQEDGFSNYEGEMENWEQNQ 469 Query: 455 -------------DAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKL 501 + + +I E+ +L ++ + S RK AK+LGVSHT I NK+ Sbjct: 470 QYQNGQSEAEISVNYKDKDFSQILQSVEKQILQKVLSEHASARKAAKQLGVSHTTILNKI 529 Query: 502 REYGL 506 ++YGL Sbjct: 530 KKYGL 534 >UniRef50_B8G264 Putative sigma54 specific transcriptional regulator n=2 Tax=Desulfitobacterium hafniense RepID=B8G264_DESHD Length = 540 Score = 277 bits (709), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 173/531 (32%), Positives = 282/531 (53%), Gaps = 41/531 (7%) Query: 9 DRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVR 68 DR GL ++ D +E+ ++ + F + E +L+ ++ + GV V Sbjct: 14 DRPGLGYDIFQRFEDHNADKIVMEVSHGQQMMIKFRSPDQEGSETLIRDLLTVQGVVSVT 73 Query: 69 TVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQL 128 V +MP ER L +L+ + E +++V+ KV N + Q+F + N A L Sbjct: 74 LVDYMPYERREQELKTILDLVSEGIIAVNTNHKVTHINEVAAQIFHTTPEEALNQDAELL 133 Query: 129 ING----FNFLR----WLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVV 180 F L+ + E + N+ ++ +FL P+ N + + G V+ Sbjct: 134 FEADAPIFETLKTGIPYSLKERKIRKNQKLI----HFLTSGVPIL----NKRGQIIGGVM 185 Query: 181 MLRSTIRMGRQLQNVAAQDVSA-FSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTG 239 ++ ++ L V + S F I+ S +M+ ++E A+ +A ++ +L+ G++GTG Sbjct: 186 TIKDFRQVEELLSKVERKPQSINFDSIIYESRRMRDLIETAKTVARGTSTILLRGESGTG 245 Query: 240 KDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH--------APEGKKGFFEQAN 291 K+LFA A H SPR+ + ++ +NCA++P+ +ESELFG+ GKKG FEQA+ Sbjct: 246 KELFAKAIHAESPRSRQAFIPINCAALPDTLLESELFGYEEGSFTGATKGGKKGLFEQAH 305 Query: 292 GGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGM 351 GG++ LDEIGE++P++Q +LLR L +GT RR+G E+ VDVR+I AT +NL EL+ KG Sbjct: 306 GGTLFLDEIGEITPQVQVRLLRVLQEGTIRRIGGSKEIPVDVRIIAATHRNLEELIDKGQ 365 Query: 352 FREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYA 411 FREDLYYRLNV+ L++P LR+ P+DI + ++ + A + G L + +L Sbjct: 366 FREDLYYRLNVIPLHIPSLRERPEDIPLIAQVLTRKIARKLGKSEVHLTKESADLLRAQK 425 Query: 412 WPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGS----------- 460 WPGNVRQL+N + R + E++P ++ T A+ E + Sbjct: 426 WPGNVRQLENLLERIINLNSNSEIKPDSFY--EWGDLTPALPVSESENTAHQLIIPFGEP 483 Query: 461 ---LDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQ 508 L +I ++ ER VL ++ +PS+RK K LGVS+T I NK+ YGL + Sbjct: 484 WPPLKDIVAQVERQVLLKVLAEHPSSRKAGKILGVSNTTILNKMNSYGLGK 534 >UniRef50_C6Q1R8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Clostridium RepID=C6Q1R8_9CLOT Length = 525 Score = 269 bits (688), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 165/523 (31%), Positives = 279/523 (53%), Gaps = 22/523 (4%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAEL-EFESFSSLMAEIR 59 +RLE+ +DR+G+ ++L L I + +E+ P ++Y+ L E S++ ++ Sbjct: 5 LRLEIISKDRIGMVLDILKKLYENNISIHSLEVFP-NKVYIKVENLQESAKKVSIIKKLL 63 Query: 60 RIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDR 119 I GV V+ V + E+ L A+++A+ + +L+++ ++++ N ++F K + Sbjct: 64 NIDGVIKVQEVELLSYEKNERKLLAIIDAVQDGILAINHNEQIELFNNYCEKIFHTKKEY 123 Query: 120 LRNHTAAQLINGFN--FLRWLESEPQDSHNEHVVINGQ-NFLMEITPVYLQDENDQHVLT 176 + QL+ GF+ + L++ + E N + NF + ++D+ Q T Sbjct: 124 IVGKNIRQLL-GFDAPIINLLKTGKDYDNIEIFTKNAKSNFHYITSGRSVKDDKGQ---T 179 Query: 177 GAVVMLRSTIRMGRQLQNV-AAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGD 235 A V I ++ NV +++ AF I+ S M + +A ++ +L+ G+ Sbjct: 180 LAAVASLKDINEAIEMTNVITSKEDLAFKDIIGNSASMVKTRKICMAVANGNSTILLRGE 239 Query: 236 TGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAP--------EGKKGFF 287 +GTGK+L+A A H+ S R+ K +LA+NCA++P++ +ESELFG+ +GK G F Sbjct: 240 SGTGKELYAKAIHKLSSRSSKNFLAINCAALPDNLIESELFGYEKGSFTGAIEKGKDGLF 299 Query: 288 EQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELV 347 + A+ G++ LDEIGE+S +QAKLLR L +GT R++G E +DVR+I AT +NL +++ Sbjct: 300 KAAHNGTLFLDEIGELSLSLQAKLLRVLQEGTIRKIGSTIEQKIDVRIIAATNRNLEDMI 359 Query: 348 QKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVL 407 K FREDLYYRLNV+ + +P L+D +DI L F+ + G L Sbjct: 360 SKNTFREDLYYRLNVIPIYIPCLKDRIEDIPMLVNFFIKNLNKQMGKNIKGAEMAFIEKL 419 Query: 408 TRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGS----LDE 463 WPGNVR+LKN + RA+ G L+ +++++ + D E + L + Sbjct: 420 VNSNWPGNVRELKNVVERAMNLCHGSLLKEENLIMDFEKNSNYETASDDYEFNFNFKLKD 479 Query: 464 ITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 + E+ L + Y S RK AK LGVSHT I NKL +Y + Sbjct: 480 VVEAAEKKALISAIKKYKSCRKAAKALGVSHTTIINKLNKYKI 522 >UniRef50_A0Q207 Transcriptional regulator n=3 Tax=Clostridium RepID=A0Q207_CLONN Length = 520 Score = 265 bits (677), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 152/518 (29%), Positives = 286/518 (55%), Gaps = 17/518 (3%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRR 60 +R ++ EDR+G+T ++L + I++ IE+ P +++ ++ + + ++ Sbjct: 5 IRFKIVTEDRIGITFDILKKIYDLNINIVSIEVFP-KTVFIKIEDIYSHNKDLIKKKLYE 63 Query: 61 IAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRL 120 ++G+ V + + E+ L A+++A+ + V+ V+ +++ N ++F D + Sbjct: 64 VSGIIMVCEINLLEYEKNERKLLAIIDAVDDGVIYVNKNLNIEIFNSYCEKIFNCNKDDI 123 Query: 121 RNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLME--ITPVYLQDENDQHV-LTG 177 + ++ + ++S +D N + IN + ++ T + ++D++ + + + Sbjct: 124 IDKDIRTVLEDPLIIDLIKS-GKDYKNVEIKINSKKGDIQYLTTGIAVKDDSGESIGVVS 182 Query: 178 AVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTG 237 ++ ++ I + V+ D AF I+ S +K V + ++ ++ +++ G++G Sbjct: 183 SITDIKKVIELASV---VSKMDKEAFGNIIGNSQAIKGVKNIVKTVSKSNSTVILRGESG 239 Query: 238 TGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAP--------EGKKGFFEQ 289 TGK+LFA A + S R K ++ LNCA++PE+ +ESELFG+ GK+G F++ Sbjct: 240 TGKELFARAIQRLSNRKDKRFVILNCAALPENLIESELFGYVKGSFTGANNNGKEGLFKE 299 Query: 290 ANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQK 349 AN G++ LDEIGE+S +QAKLLR L DG R++G E VDVR+I AT +NL E+V+K Sbjct: 300 ANEGTIFLDEIGELSMVLQAKLLRVLQDGVVRKIGSCTEEKVDVRIIAATNRNLEEMVKK 359 Query: 350 GMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTR 409 G FREDLYYRLNV+ + +P LR+ +DI + F+ + + + D L + Sbjct: 360 GEFREDLYYRLNVIPIFIPSLRERMEDIPDMVTFFIKKLNHKLSKKILGVKYDFIKELMK 419 Query: 410 YAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDY-DAATVAVGEDAMEGSLDEITSRF 468 Y WPGN+R+L+N + RA+ DG L + +++ Y + ++ ++A + L +I Sbjct: 420 YNWPGNIRELQNVVERAMNLCDGKLLTKKHLMINSYINPISLDEVKEASDLKLKDIVEAC 479 Query: 469 ERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 E+ + + + + RK AK LGVSHT I NK+++Y + Sbjct: 480 EKEAIIKALKKNKTFRKTAKVLGVSHTTIINKIKKYNI 517 >UniRef50_A6VW55 Sigma-54 factor interaction domain-containing protein n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VW55_MARMS Length = 498 Score = 259 bits (663), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 166/520 (31%), Positives = 278/520 (53%), Gaps = 36/520 (6%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGR-IYLNFAELEFESFSSLMAEIR 59 MRLE+ CEDR+G+ RE LDL + GID+R +E+D R IY F+++ F L+A+IR Sbjct: 1 MRLEIQCEDRIGMVREALDLFIPHGIDMRLVEVDTKRRCIYCGFSDIPFSKLQQLLADIR 60 Query: 60 RIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDR 119 R+ V DV+TV + PSEREH AL LLEALP+ V+SVD+K + M + + + Sbjct: 61 RLDSVEDVKTVMFTPSEREHNALYTLLEALPDGVISVDLKGNITMVTELAAEDLNVPVLN 120 Query: 120 LRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAV 179 L + Q I G N + + P+D ++ + I + L+E+ P+++ D+ G V Sbjct: 121 LLHKPVQQFIKGINVSKDTWANPRDGMSKRIRIRNKTLLLEMKPIFVSDDEGVANPAGTV 180 Query: 180 VMLRSTIRMGRQLQNVA-AQDV-----SAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLIT 233 + L+S R+ RQ +++ A D + F V S M+ + QA+ A + PLL+ Sbjct: 181 IYLKSKTRLDRQAESLKQAPDAENYLENYFRPAVMKSEAMRRTLLQAKAFAEVPMPLLVQ 240 Query: 234 GDTGTGKD-----LFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPEGKKGFFE 288 G+ G+GK LF Y R + + + ED + + G+F Sbjct: 241 GEVGSGKRDLVDALFQYWQKHQGDREAQLIVRHARELVREDI-------NKLDKISGWF- 292 Query: 289 QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQ 348 ++++I + ++Q L +L+ R GE + +VR+I + + +L Sbjct: 293 -------VIEDIECLDEQVQLDLAAWLS----RHPGESTSLDSNVRLISLSSLSQTQLSN 341 Query: 349 KGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLT 408 + LY+ L L L++P LRD +DI L + ++ A+ P P ++ T L Sbjct: 342 SETLNKTLYFSLATLVLSMPSLRDRKEDIEGLIQQVISAQAERYRFPVPSISKGALTKLA 401 Query: 409 RYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYD-AATVAVGEDAMEGSLDEITSR 467 Y+WPGN+++L+N + L + E + +DILLP+ + +A+ +D++E ++ + Sbjct: 402 LYSWPGNLKELQNTCLQTLLTIKDKEWQAEDILLPENNYMVDMALIDDSLEVTVKQ---- 457 Query: 468 FERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 +E +L +LY N+PSTR+LAK +G+SH+AIANKL+EY ++ Sbjct: 458 WEAELLKRLYPNFPSTRRLAKAVGMSHSAIANKLKEYEIN 497 >UniRef50_A1HQW3 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HQW3_9FIRM Length = 522 Score = 251 bits (641), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 162/520 (31%), Positives = 272/520 (52%), Gaps = 18/520 (3%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRR 60 MR+ + DR+ +T ++L + +++ +E+ IY+ F ++ ++ + AEI Sbjct: 7 MRIGIKTIDRVNMTFDILKVFAKYEVNIIWMEVYT-HIIYIKFDRVDAATWGKMHAEILA 65 Query: 61 IAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRL 120 ++GV ++ + + E + +L+A + + +D + + N + Q+ Q L Sbjct: 66 VSGVQELTEIDLIAFEEREQLIETILDASSDGFIVIDKDGTIKLTNSRAIQILRQA-GNL 124 Query: 121 RNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVV 180 + ++ + ++ S+ + N + +N+ V+ G ++ Sbjct: 125 EGKSIYTILPAPDIIKKALSKGIEISNHTLFYEHGGGTCHCLVSSRTLKNEAGVIQGLIL 184 Query: 181 MLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGK 240 LR + + ++ F+ IV SP M VV A+ +A ++ +LI G++GTGK Sbjct: 185 TLRDMHDVREMVYSITQARQITFNDIVTKSPSMLSVVALARNIAKNNSTVLIRGESGTGK 244 Query: 241 DLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH--------APEGKKGFFEQANG 292 +LFA A H A R KP++ LNCA+IP+ +ESELFG+ GK+G FE A+G Sbjct: 245 ELFARAIHAAGKRHNKPFIPLNCAAIPDTLIESELFGYEDGTFTGGKKGGKQGLFELAHG 304 Query: 293 GSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMF 352 G++ LDE+ E+S +QAKLLR L +G RRVG E+ VDVR+I AT +NL +++ G F Sbjct: 305 GTLFLDEVAELSAYVQAKLLRVLQEGMVRRVGGHKEIAVDVRIIAATNRNLEAMLKNGQF 364 Query: 353 REDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAW 412 REDL+YRLNV+ L +PPLR+ +DI L + F+ + G P ++ + RY W Sbjct: 365 REDLFYRLNVIPLYIPPLREHIEDIPLLIDHFIKVLGGKLGKPDIVVSPRAVEKMLRYPW 424 Query: 413 PGNVRQLKNAIYRALTQLDGYELRPQDILLP----DYDAATVAVGEDAMEGSLDEITSRF 468 PGNVR+L N + RA+ DG + I+ D AA V DA+ L E Sbjct: 425 PGNVRELSNVVERAIYLCDGRVITEDHIVFAQAAVDQPAAAV---NDAIP-LLREAVEAT 480 Query: 469 ERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQ 508 ER ++ + R Y S R+ AK LGV+HT + N++++ + + Sbjct: 481 ERKLIAEAIRRYGSLRQAAKALGVTHTLLINRMKKLNIHK 520 >UniRef50_A1VG32 Sigma54 specific transcriptional regulator, Fis family n=5 Tax=Desulfovibrionales RepID=A1VG32_DESVV Length = 539 Score = 250 bits (639), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 167/527 (31%), Positives = 272/527 (51%), Gaps = 28/527 (5%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEID---PIGRIYLNFAELEFESFSSLMAE 57 ++LE+ +DR+G+ ++ LL G + +E++ +++ +F++L Sbjct: 16 LKLELVFKDRVGIVSDVSSLLAGEGYSIVCMEVERRHDRSHVHIEADGAGEGAFAALRQR 75 Query: 58 IRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKL 117 + G+ + R V +P+E + +L+ + + V+S+D ++ N + + +G Sbjct: 76 FESMRGLLECREVQTLPAEERENRIKVVLDTIGDGVMSIDGGGRITSINKVAREAYGCAG 135 Query: 118 DRLRNHTAAQL-INGFNFLRWLES-EPQDSHNEHVVINGQ-NFLMEITPVYLQDENDQHV 174 + + + L + L L E D+ E G+ F + TP+ + Sbjct: 136 EDVTERSLTSLRLPDHGLLDCLHGRELHDARRELATPLGKLQFFVTRTPI----RDGVGR 191 Query: 175 LTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITG 234 + GAV + R + + + + D F IV P ++ + A+++A A + I G Sbjct: 192 IIGAVEIARDMREIRKLARTLVDADHVGFDDIVGHHPAIEAAIAFARRVAATDAVIAIRG 251 Query: 235 DTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAP--------EGKKGF 286 ++GTGK+LFA A H S R G P++ +NCA++PE +ESELFG+ EGK G Sbjct: 252 ESGTGKELFARAMHAESGRKG-PFVPINCAALPEQLLESELFGYERGAFTGGRREGKPGL 310 Query: 287 FEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVEL 346 FE A GG+V LDEIG+M QAK+LR + + RR+G + EV VD R+I AT + L + Sbjct: 311 FESARGGTVFLDEIGDMPLASQAKILRVMQEQRVRRIGGEAEVPVDARIITATNRPLERM 370 Query: 347 VQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTV 406 V+ G FR+DLYYR+NVL +++PPLR+ DI L F+ + A G P Sbjct: 371 VEDGRFRQDLYYRINVLPMHIPPLRERRGDIPLLANHFLQQLASRIGGAAPAFTDGALAR 430 Query: 407 LTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPD------YDAATVAVGEDAMEG- 459 L + WPGNVR+LKN + RA G + Q IL ++AA A A +G Sbjct: 431 LRSHEWPGNVRELKNVVERAAILAGGAVVDDQFILFSHELGKGVFNAARTASA--AGQGD 488 Query: 460 SLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 +L E + FE+ ++ + R PS RK AK LG+SHTA+ +K+R +G+ Sbjct: 489 TLKEQVANFEKKIVEDVVRRAPSIRKAAKILGISHTALLDKMRRHGV 535 >UniRef50_B8F9P3 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8F9P3_DESAA Length = 699 Score = 250 bits (638), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 160/491 (32%), Positives = 256/491 (52%), Gaps = 46/491 (9%) Query: 60 RIAGVT----DVRTVPWMPSEREH-----LALSALLEALPEPVLSVDMKSKVDMANPASC 110 RI G T D+ + + +E EH + L A++E+ + + D + + N A Sbjct: 213 RIVGATAVLQDISELEAISNELEHTRRISMELDAIIESSFDGIYVTDGEGRTLRVNKAYE 272 Query: 111 QLFGQKLDRLRNHTAAQLINGFNF-----LRWLESEPQDSHNEHVVINGQNFLMEITPVY 165 + G + + + HT A+L+ F +R LE+ +S + V G+ ++ TP++ Sbjct: 273 RTTGIRREDVVGHTMAELVEQGFFNESVSMRVLENRKGESLVQKVK-TGKTVMVTGTPIF 331 Query: 166 LQDENDQHVLTGAVVMLRSTIRMGRQLQNVAA-----------------QDVSAFSQIVA 208 +D+ ++ V +R + LQN + A +V Sbjct: 332 ----DDKGEISLVVTNVRDVTEL-YNLQNELGRMEVLRTWYENELEQLRESAGAAPSVVI 386 Query: 209 VSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPE 268 S KMK V E A +LA + A +L+ G++G GK++FA H SPR KP++ ++CA+IPE Sbjct: 387 RSKKMKEVHELAMRLARVDATVLVQGESGVGKEIFADLIHTNSPRKDKPFVKISCAAIPE 446 Query: 269 DAVESELFGH--------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTF 320 +ESELFG+ +GK G FE A+GG++ LDEIGEM +QAKLLR L D Sbjct: 447 QLLESELFGYEAGAFTGAKAKGKAGIFESADGGTIFLDEIGEMPLSLQAKLLRVLQDKKI 506 Query: 321 RRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPL 380 RVG +H + VD+R++ AT ++L ++V KG FR DLY+RLNV+ + +PPLR+ + I+ Sbjct: 507 MRVGANHSMDVDIRILAATNRDLSQMVHKGAFRNDLYFRLNVVPVVIPPLRERKEAIVNF 566 Query: 381 TELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDI 440 F+ ++ + G + ++A D+ +L Y WPGNVR+L+N + R + G + P D+ Sbjct: 567 AYHFLEKYNRKYGFAK-QIAPDVLDILYDYDWPGNVRELENTVERMVVVTKGDVIEPADL 625 Query: 441 LLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANK 500 A + GSL ER +L Q + ST K+AK LGV+ + + K Sbjct: 626 PEKLRIAPKSGLAHALGGGSLKSALEGLEREILQQALETHGSTHKVAKALGVNQSTVVRK 685 Query: 501 LREYGLSQKKN 511 L+ YG+ KK+ Sbjct: 686 LQRYGIDPKKS 696 >UniRef50_C4XRZ0 Fis family transcriptional regulator n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XRZ0_DESMR Length = 523 Score = 246 bits (629), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 166/524 (31%), Positives = 267/524 (50%), Gaps = 21/524 (4%) Query: 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSS----LMAE 57 +L + DR+G+ ++ LL RG ++ +E+ F E++ E LM+ Sbjct: 3 KLHLKFTDRVGVVADISALLASRGHNILSMEVAQEHGCAHVFLEIDHERGDCPRKDLMSM 62 Query: 58 IRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFG-QK 116 + G+ + + MP E++ L +L+ + E V+++D V + N + + F + Sbjct: 63 LAACPGLLRISCIEAMPHEKQANLLRTVLDNVDESVVAIDASGCVTLINNVARENFKCGR 122 Query: 117 LDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLT 176 D + H + L LE ++ ++V + + T + D +T Sbjct: 123 ADPVGRHVRELPLPDHAILGCLEGRRYNNVRKNVTVGRKRLQYFATGRPILDAEGG--VT 180 Query: 177 GAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDT 236 GAV + + + +++ FS I+ S M+ VV A+K+A A + I G++ Sbjct: 181 GAVEIAKDAQEIRDLAKSIYEPADVGFSDIIGASAAMRQVVAMAEKIASSEAIVTIRGES 240 Query: 237 GTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAP--------EGKKGFFE 288 GTGKD+ A A H AS G+ ++A+NCA++PE +ESELFG+ EGK G FE Sbjct: 241 GTGKDMLAQAMHAASGLPGQ-FVAINCAAVPETLMESELFGYVGGAFSGARREGKPGLFE 299 Query: 289 QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQ 348 A G+V DEI EM QAK+LR + +G RR+G+ E + R+I AT +NL + V+ Sbjct: 300 LAKDGTVFFDEIAEMPLAAQAKILRLIQNGRLRRLGDSRETQANARIITATNRNLEQFVE 359 Query: 349 KGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLT 408 KG+FREDLYYR+NVL L++PPLR+ P+DI L + F+ + + G L Sbjct: 360 KGLFREDLYYRINVLPLHIPPLRERPEDICALADHFLFQLSARLGKELTGFDPAARDKLV 419 Query: 409 RYAWPGNVRQLKNAIYRALTQLDGYELRPQDILL-----PDYDAATVAVGEDAMEGSLDE 463 R+ WPGNVR+LKN + RA D + + +LL D A AV + SL Sbjct: 420 RHGWPGNVRELKNVVERAAILCDQPVIGERHVLLVHELGRDPLAGGGAVSDVGGRLSLRA 479 Query: 464 ITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 R+ER +L + S R+ A+ LG+SHTA+ K++++ L+ Sbjct: 480 AMERYERDLLESALKGRKSLRQAARELGLSHTALLQKVKKHRLA 523 >UniRef50_Q5WE88 Transcriptional activator of the acetoin dehydrogenase operon n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WE88_BACSK Length = 647 Score = 243 bits (619), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 162/446 (36%), Positives = 235/446 (52%), Gaps = 43/446 (9%) Query: 77 REHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLR 136 R HL L LE + VLSVD+ ++ N + + +R +N T+ I F L+ Sbjct: 226 RHHLFLHTALEKMDHIVLSVDLSDQILTRNEGA-----NRSERFQNETS---IASFPELK 277 Query: 137 WL----ESEPQDSHNEHVVINGQN--FLMEITPVYLQDENDQHVLTGAVVMLRSTIRM-- 188 L + Q NE + N + + I PV QD + G V+ L+ R+ Sbjct: 278 ALVANVRTNGQQIVNEQIQDGSTNKRYQVSIYPVRFQDH-----IYGVVIFLQQDQRVVN 332 Query: 189 GRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACH 248 ++ A +FS +V VSP + +++QA+K A L + +LI+G+TGTGK++ A A H Sbjct: 333 KKKPSPRKATTRYSFSNMVGVSPTFQALLKQAEKAASLQSTILISGETGTGKEVLAQAIH 392 Query: 249 QASPRAGKPYLALNCASIPEDAVESELFGH--------APEGKKGFFEQANGGSVLLDEI 300 QAS R GKP++A+NC ++P +ESEL G+ +G G FEQANGG++ LDEI Sbjct: 393 QASNRGGKPFVAINCGAVPPSLLESELSGYEAGAFTGSKAKGSAGKFEQANGGTIFLDEI 452 Query: 301 GEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRL 360 G+M +Q LLR L + R+G + VDVRVI AT K+L E VQKG FREDLYYRL Sbjct: 453 GDMPLDLQVHLLRILEERVVTRIGGSVPIPVDVRVISATNKDLKEAVQKGTFREDLYYRL 512 Query: 361 NVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLK 420 VL + LPPLR+ +DI L + F+ E G L + T+L RY WPGN+R+LK Sbjct: 513 CVLQMELPPLRERSEDIPVLIQSFLPALCQEFGKQMISLTRETLTILERYHWPGNIRELK 572 Query: 421 NAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNY 480 N + +A+ +DG + P LP D+ D E ++ +L L + Sbjct: 573 NVLQQAMFVMDGDVIHPHH--LP--DSFYSQTQSDEYE----------KQKLLRALEQQE 618 Query: 481 PSTRKLAKRLGVSHTAIANKLREYGL 506 + K A L +S I +L++Y L Sbjct: 619 GNVTKAAASLNMSRATIYRRLKKYRL 644 >UniRef50_A1HSG4 Putative PAS/PAC sensor protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HSG4_9FIRM Length = 559 Score = 240 bits (612), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 148/403 (36%), Positives = 215/403 (53%), Gaps = 48/403 (11%) Query: 144 DSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNV-------- 195 DS HV+ GQ+ T Q V+TG+ V S R+ R + NV Sbjct: 152 DSVTIHVLKTGQSHTFSQTF----RSGRQSVITGSPV-FDSNNRIIRVVTNVRDMTEINR 206 Query: 196 -------AAQDVSAFSQIVAV--------------SPKMKHVVEQAQKLAMLSAPLLITG 234 + + ++ +SQIV S KM+ V + A K A + APLLITG Sbjct: 207 LKEELAESQKKLTQYSQIVETMTEEQMFNEKLIFRSRKMEVVRDSAIKFAKVDAPLLITG 266 Query: 235 DTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH--------APEGKKGF 286 ++G GK++ A ++ SPR G P+L +NC +IPE +ESELFG+ EG+ G Sbjct: 267 ESGVGKEVIADLVYRYSPRKGLPFLKINCGAIPETLLESELFGYEGGAFTGAKKEGRTGL 326 Query: 287 FEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVEL 346 FE ANGG+V+LDEIGE+ +Q KLLRF+ F RVG V VDVR+I AT ++L E+ Sbjct: 327 FEMANGGTVMLDEIGELPLALQVKLLRFVQQKEFYRVGGKKVVKVDVRLIAATNRDLQEM 386 Query: 347 VQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTV 406 V + FR DL+YRLNVL +++PPLR+ P+DI+PL + ++ + V + +++ D+ Sbjct: 387 VNQKQFRSDLFYRLNVLRIHIPPLRERPEDIIPLVNYLLDKYNKKYNVSK-RISGDVYHA 445 Query: 407 LTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGED---AMEGSLDE 463 T Y W GNVR+L+N I R + D E+ LPD + V D E + E Sbjct: 446 FTNYTWVGNVRELENLIERLVVICDRDEITLD--YLPDEMKKAIYVWRDDSIGREQTYKE 503 Query: 464 ITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 FER + Y S+R+ A++LG+ H+ I K +YG+ Sbjct: 504 AKEEFEREFFCRALEKYKSSRQAAEKLGLDHSTIVKKAAKYGI 546 >UniRef50_C8X2X5 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X2X5_DESRD Length = 525 Score = 238 bits (608), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 165/532 (31%), Positives = 279/532 (52%), Gaps = 31/532 (5%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSS---LMAE 57 ++L++ DR+G+ ++ +L I++ +E+D G + E + E S LM Sbjct: 2 IKLQLIFRDRVGIIADITAMLGEDSINILSMEVDASGDRTFVYFETQAEDLCSSDDLMRR 61 Query: 58 IRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKL 117 ++ I G+ ++ T+ MP E+ +L +L ++ + ++++D ++ +AN + +FG K Sbjct: 62 LKEIPGLLEISTIRTMPQEKRERSLEVILNSVSDGIVAIDEHRRIIVANRVARNIFGCKD 121 Query: 118 DRLRNHTAAQL-INGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLT 176 + L + + L L + + F + +D N + + Sbjct: 122 PEIIGRPIQALNLPDLSMLECLRGKRYHNVPRKCQTPAGLFHFFASAQPFKDSNGR--IV 179 Query: 177 GAVVMLRSTIRMGRQLQNVAAQDVS-AFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGD 235 GAV +++ + +QL N A F I+ SP + + A+++A +A + I G+ Sbjct: 180 GAVEVMKDMKEI-KQLANFVADPARITFEDIIGKSPAITSAIAFAKQVARSNAVISIRGE 238 Query: 236 TGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFF 287 +GTGK+LFA A H AS +G +L +NCA++PE +ESELFG+ +GK G F Sbjct: 239 SGTGKELFAQAIHHASGLSGL-FLPINCATLPEQLLESELFGYEGGSFTGADKQGKVGLF 297 Query: 288 EQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELV 347 E+A G++ LDEI EM P QAKLLR + + RR+G E+ ++ R++ AT KNL +V Sbjct: 298 EKAKDGTIFLDEIAEMPPNCQAKLLRVIQERRVRRIGGSAEIPINARIVTATSKNLESMV 357 Query: 348 QKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVL 407 + +FR+DLYYR+NVL + LP LR+ +DI L E F+ + + L L Sbjct: 358 RDNLFRDDLYYRINVLPIYLPALRERLEDIPLLAEHFLFQLNYKLNKGHQLLTKGALEKL 417 Query: 408 TRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGED--------AMEG 459 + +AWPGN+R+L+N I RA L G Q+ +L ++ ED ++EG Sbjct: 418 SGHAWPGNIRELRNVIERAAI-LGGANQISQECILFSFEVGQRQ--EDPGGVYPSCSVEG 474 Query: 460 SLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREY--GLSQK 509 D++ S ER +L Q S R+ A++L +SH+A+ NK+R++ GL QK Sbjct: 475 LRDQLDS-LERKLLQQALDRTASIRQAARQLRISHSALLNKMRKHKLGLVQK 525 >UniRef50_B2A7X5 Putative sigma54 specific transcriptional regulator n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A7X5_NATTJ Length = 594 Score = 238 bits (606), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 118/237 (49%), Positives = 155/237 (65%), Gaps = 8/237 (3%) Query: 197 AQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGK 256 +Q+ F I +VSPKM+HV+E A+++A A +LI G++GTGK+L A A HQ S R Sbjct: 258 SQEHYTFGNIFSVSPKMEHVIELAKQVAPTKATVLINGESGTGKELLANAIHQHSDRKDA 317 Query: 257 PYLALNCASIPEDAVESELFGHAP--------EGKKGFFEQANGGSVLLDEIGEMSPRMQ 308 P + +NC +IPE+ ESE FG+ EGK G FE A+GG++ LDEIG++ MQ Sbjct: 318 PLITINCGAIPENLAESEFFGYCSGAFTGAKKEGKPGAFEIADGGTLFLDEIGDLPLNMQ 377 Query: 309 AKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLP 368 AKLLR L +G+F RVG V VDVR+I AT +NL ELVQ FREDLYYR+NV L LP Sbjct: 378 AKLLRALQEGSFYRVGGIEPVSVDVRIIAATNQNLEELVQNNQFREDLYYRINVANLELP 437 Query: 369 PLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYR 425 PLR+ +DIMPLT+ F+ F+ G+ ++ + L Y WPGNVR+LKN I R Sbjct: 438 PLREKTEDIMPLTKRFIDHFSQVHGIEITEIEQAVMDTLEEYHWPGNVRELKNVIER 494 >UniRef50_A5D511 Transcriptional regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D511_PELTS Length = 478 Score = 236 bits (603), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 131/336 (38%), Positives = 198/336 (58%), Gaps = 30/336 (8%) Query: 203 FSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALN 262 F I+ SP + HV + AQK+A + ++I G++G+GK+L A++ H AS R+ KP++ +N Sbjct: 146 FEDIITCSPNLIHVKDLAQKVAPVDVNVMILGESGSGKELLAHSIHSASTRSSKPFVCIN 205 Query: 263 CASIPEDAVESELFGHAP--------EGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRF 314 CA+IPE+ +ESELFG+ P GK G E AN G+V LDEIG+M P MQAKLLRF Sbjct: 206 CAAIPENIMESELFGYEPGAFTNAKSNGKLGKLEIANNGTVFLDEIGDMPPFMQAKLLRF 265 Query: 315 LNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCP 374 L +G +VG V V+VRVICAT +N+ ++V+ G+FR DLYYRL+ + L +PPLR+ P Sbjct: 266 LQEGELEKVGSVKPVSVNVRVICATNRNIQKMVEDGIFRADLYYRLSSIILKIPPLRERP 325 Query: 375 QDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYE 434 +DI L + F+ ++ +P K+ + +L Y WPGNVR+L++ + DG Sbjct: 326 EDIELLCDHFLKSITEKWAIPLKKIDKEALEILKNYYWPGNVRELQHLLETLCCITDGNI 385 Query: 435 LRPQDILLPDY-----DAATVA-----------VGEDAMEGSL--DEITSRFERSVLTQL 476 ++ + LP Y D+A + + D + D I S+ E+ +L ++ Sbjct: 386 IKAK--ALPSYLFGQSDSAMLKNNELRRISLSNINSDGNNKYICSDVINSK-EKELLEEV 442 Query: 477 YRNY-PSTRKLAKRLGVSHTAIANKLREYGLSQKKN 511 RN + RK A+ LG+ T + KLR+Y + K N Sbjct: 443 LRNTGGNKRKAAEMLGIHRTTLYYKLRKYNMQYKVN 478 >UniRef50_B8DQH7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DQH7_DESVM Length = 604 Score = 236 bits (601), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 165/511 (32%), Positives = 252/511 (49%), Gaps = 65/511 (12%) Query: 52 SSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQ 111 ++L + RI + + R V +P+E LL+ L + VLS+D + +V N + + Sbjct: 100 AALFETLGRIPDLLEFRIVDTLPAEERANRFLVLLDNLRDGVLSIDAEGRVTSINKVARE 159 Query: 112 LFG-------QKLDRLRNHTAAQLINGF----------NFLRWLES-EPQDSHNEHVVIN 153 +G T A ++G L L E D+ E Sbjct: 160 AYGCTGAPGVSGTSGTPGGTPAADLSGLPLDALGLPDRGILDCLSGRELVDAKREVATPG 219 Query: 154 GQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKM 213 G +T ++D + + GAV + R + + +++ F IV P + Sbjct: 220 GGRLQFFVTRRPIRDGEGR--IIGAVEVARDMREIRKLARSITEPAQVTFGDIVGQHPAI 277 Query: 214 KHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVES 273 + A+++A + + I G++GTGK+LFA A H AS R G P++ +NCA++PE +ES Sbjct: 278 GFAISFARRVAATDSIIAIRGESGTGKELFARAIHTASGRQG-PFVPVNCAALPEQLLES 336 Query: 274 ELFGHAP--------EGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGE 325 ELFG+ +GK G FE A GG+VLLDEIG+M QAK+LR + +G+ RRVG Sbjct: 337 ELFGYEAGAFTGGRRDGKPGLFETARGGTVLLDEIGDMPLASQAKMLRVMQEGSVRRVGG 396 Query: 326 DHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFV 385 EV VDVR+I AT + L LV++G FR+DLYYR+NVL +++PPL++ P DI L E F+ Sbjct: 397 TAEVPVDVRIITATNRTLERLVEEGRFRQDLYYRINVLPIHIPPLKERPGDIAVLAEHFL 456 Query: 386 ARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDY 445 A G P L+ L + WPGNVR+LKN + RA L P D++ + Sbjct: 457 LGLAARLGGPVRSLSPGALARLAGHHWPGNVRELKNVVERAAI------LCPDDVVGARF 510 Query: 446 -------------DAATVAVGEDAM-----------------EGSLDEITSRFERSVLTQ 475 ++A +A G EG L ++ + FE+ ++ Sbjct: 511 ILFAHELEGGLFGESARLADGVADTVADAAALASGHEHHGDGEGRLKDMIAVFEKRIIVD 570 Query: 476 LYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 S RK A++LG+SHTA+ +KLR +GL Sbjct: 571 AVAAAGSVRKAARKLGISHTALLDKLRRHGL 601 >UniRef50_A4J593 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J593_DESRM Length = 582 Score = 234 bits (598), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 145/460 (31%), Positives = 237/460 (51%), Gaps = 43/460 (9%) Query: 82 LSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESE 141 +L+ + E + +D +V + NP + +L+ K +++ + + + + Sbjct: 133 FETVLDQVNESICGIDKLHRVMIWNPKAEELYNVKAEKILSGRIEDFFSNLRISNCMHEK 192 Query: 142 PQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTG--------AVVMLRSTIR------ 187 + H G + L+ PV+ + V+ G +V L + Sbjct: 193 KEVRGLYHQPCEGAHVLINSAPVF----DSGKVIGGLAVEKDITEIVQLNQELNKASTQV 248 Query: 188 --MGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAY 245 + ++++ ++ QD AF++++ S ++ ++ +K+++ A +L+ G++GTGK+L A Sbjct: 249 KLLEQEIRKISGQD-CAFNKLIGRSEAIQKLIVFGKKISVTEATVLLRGESGTGKELLAR 307 Query: 246 ACHQASPRAGKPYLALNCASIPEDAVESELFGHAP--------EGKKGFFEQANGGSVLL 297 A HQ SPR P++ +NC +IP + ESELFG+ +GK G FE ANGG++ L Sbjct: 308 AIHQNSPRHMNPFIVVNCGAIPNNLFESELFGYEGGAFTGADRKGKPGMFELANGGTLFL 367 Query: 298 DEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLY 357 DE+GEM MQAKLLR L +GTF RVG VHV+VRV+ AT +NL +++ + FREDLY Sbjct: 368 DEVGEMPIEMQAKLLRVLQEGTFYRVGGSQSVHVNVRVLAATHRNLEDMINRRQFREDLY 427 Query: 358 YRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVR 417 YRLNV+ L +PPLRD +DI L LF+ F + K+ + T Y WPGNVR Sbjct: 428 YRLNVVALEIPPLRDRREDIPELVHLFMQEFCQKYDKNIKKIEPAVMTAFLDYTWPGNVR 487 Query: 418 QLKNAIYRALTQLDGYELRPQDIL----LPD---YDAATVAVGEDAMEGSLDEITSRFER 470 +LKNA+ R + DG DI+ LP+ + V +G L + E+ Sbjct: 488 ELKNAVERLVVLTDG------DIIDEAALPENLRRNTYISLVTSPVSQGKLMNVAVEAEK 541 Query: 471 SVLTQLYRNYPSTRKLAKR-LGVSHTAIANKLREYGLSQK 509 ++ + + R A R LG+ + + KLR+ G+ K Sbjct: 542 QLILKTLQQVRGNRSEAARVLGIPRSTLYYKLRQLGIPAK 581 >UniRef50_Q2RKJ6 Sigma54 specific transcriptional regulator with PAS sensor, Fis family n=2 Tax=Bacteria RepID=Q2RKJ6_MOOTA Length = 636 Score = 234 bits (598), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 151/438 (34%), Positives = 235/438 (53%), Gaps = 22/438 (5%) Query: 82 LSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESE 141 A+L+ E +++ D + ++ + NPA+ ++ G R+ A +++ G + L+S Sbjct: 195 FKAILDFAYEGIVATDQEGRITLVNPAAEKILGLAAHRVVGRPAREVLPGVPLNQVLQSG 254 Query: 142 PQDSHNEHVVINGQNFLME-ITPVYLQDENDQHVLT-GAVVMLRSTIRMGRQ---LQNVA 196 + H G + E I PV E V T V L++ RQ L+ Sbjct: 255 QKRLGELHRA--GNTLVAENIIPVIAGRETVGAVATFQDVSHLQAVEARARQELYLKGHV 312 Query: 197 AQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGK 256 A+ F IV SP M ++E+A++ A A +LI G+TGTGK++ A + H AS R Sbjct: 313 AR--YTFEDIVTQSPVMAKIIERARQFAAAEATVLINGETGTGKEMVAQSIHNASRRRNG 370 Query: 257 PYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQ 308 P++A+NCA++PE+ +ESELFG+ GKKG FE A+GG++ LDEIGE+S +Q Sbjct: 371 PFVAVNCAAVPENLLESELFGYEEGAFTGARKGGKKGLFELAHGGTLFLDEIGELSLNLQ 430 Query: 309 AKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLP 368 A+LLR L RVG D + VDVR+I AT +NL + + + FR DLYYRLNVL +NLP Sbjct: 431 ARLLRVLQQKAIMRVGGDRVLPVDVRIIAATHRNLKDAIARDAFRRDLYYRLNVLQINLP 490 Query: 369 PLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALT 428 PLR+ P+D+ L + V + + G P + ++ + Y+WPGNVR+L+N + R + Sbjct: 491 PLRERPEDLPLLIKALVEKISRRAGRLPPIFSEEIIARMQAYSWPGNVRELENILERLVV 550 Query: 429 QLDGYELRPQDI--LLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKL 486 G E+ D+ +L + V + A+ G+L E+ R L N T Sbjct: 551 LRSGEEVEAGDLDEILEPAENQPQPVLQLALRGTLAEMEGEIIRRTLALTGNNKEET--- 607 Query: 487 AKRLGVSHTAIANKLREY 504 +RLG+S T + +L+ + Sbjct: 608 CRRLGLSKTTLWRRLKSW 625 >UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Ammonifex degensii KC4 RepID=C9RBQ4_AMMDK Length = 470 Score = 234 bits (597), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 131/323 (40%), Positives = 192/323 (59%), Gaps = 17/323 (5%) Query: 206 IVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCAS 265 ++ SP M+ V + ++A +LI G++GTGK+L A A H SPR GKP++ ++C + Sbjct: 139 LIGCSPAMQEVYKTIGRIADSDVTVLIQGESGTGKELVAEAIHYNSPRQGKPFVKIDCTA 198 Query: 266 IPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDG 318 IPE+ +ESELFGH A K G FE A+GG+V LDEIG++SP +QAKLLRFL + Sbjct: 199 IPENLLESELFGHEKGAFTGAHTRKLGKFELADGGTVFLDEIGDISPALQAKLLRFLQEK 258 Query: 319 TFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIM 378 F RVG VDVR+I AT K+L E V+ G+FREDLYYRLNV+ + LPPLR+ +DIM Sbjct: 259 AFERVGGTETRRVDVRIIAATNKDLEERVKSGLFREDLYYRLNVVEIKLPPLRERKEDIM 318 Query: 379 PLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQ 438 L + FV+ + G L + +L +Y WPGNVR+L+N RA+ G + P+ Sbjct: 319 LLVDYFVSLSNRKFGKQVTGLTRSVADILLQYNWPGNVRELRNVCERAVLMARGNVITPE 378 Query: 439 DILLPDYDAATVAVGEDAMEGS-------LDEITSRFERSVLTQLYRNYPSTRK-LAKRL 490 LP+Y V +A + L E+ + ERS + + Y + +A+ L Sbjct: 379 S--LPEYLLRAVRGRTEAWHPAEDRGVLPLKEMVAEMERSAILRALEEYRGNKTAVARAL 436 Query: 491 GVSHTAIANKLREYGLSQKKNEE 513 G+S T + K++E G++ +N++ Sbjct: 437 GMSRTTLYAKMKELGIADPENKD 459 >UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=A7HIM1_ANADF Length = 495 Score = 234 bits (596), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 135/323 (41%), Positives = 194/323 (60%), Gaps = 19/323 (5%) Query: 206 IVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCAS 265 +V S M+ V++Q +K+A A +L+ G++GTGK+L A A H ASPR +P+++++CA+ Sbjct: 175 LVGSSEPMRRVLDQVRKVASTGATVLVLGESGTGKELVARAIHDASPRREQPFVSISCAA 234 Query: 266 IPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDG 318 IPE +ESELFGH A K G FE ANGG++ LDE+GE+ +Q KLLR L + Sbjct: 235 IPEGLLESELFGHEKGAFTGAIRRKLGRFELANGGTLFLDEVGEIPHAVQVKLLRVLQER 294 Query: 319 TFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIM 378 F RVG + V VDVRV+ AT +NL ++V+ G FREDLYYRLNV+ + LPPLRD P D+ Sbjct: 295 QFERVGGEETVEVDVRVVSATNRNLAQMVESGRFREDLYYRLNVVPILLPPLRDRPGDVE 354 Query: 379 PLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQ 438 L FVAR A LA + +L R+ WPGNVR+L+N I +AL +G +RP+ Sbjct: 355 ELARFFVARLAPRMSRAVTGLAPEALELLRRHRWPGNVRELENVIEQALVFAEGELVRPR 414 Query: 439 DI-----LLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTR-KLAKRLGV 492 D+ P + V G+ SL +I ER ++ Y + + A+ LG+ Sbjct: 415 DLPEGVRKAPPAPSLPVPSGDR----SLTDILEDLERQLILAAYEKARGVKAETARLLGI 470 Query: 493 SHTAIANKLREYGL--SQKKNEE 513 +A+ KL +YG+ + +K EE Sbjct: 471 KPSALYYKLEKYGIVKAGEKAEE 493 >UniRef50_A1HNH8 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Clostridiales RepID=A1HNH8_9FIRM Length = 637 Score = 232 bits (591), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 153/494 (30%), Positives = 257/494 (52%), Gaps = 50/494 (10%) Query: 43 FAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKV 102 F E E+ + E +R+A VR SE+ +L+ E +++VD + Sbjct: 166 FIETGREAIYHALREAKRVA---RVRRQEQERSEQ----FRTILDYSTEGIITVDAAGAI 218 Query: 103 DMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEIT 162 ++ N A+ ++ G + + +L+ R L S + E +NGQ + Sbjct: 219 NLVNAAAMKITGLSGEAV-GLAVDKLLPQLGLSRVLAS-GRAELGEVETVNGQQVAVNRV 276 Query: 163 PVYLQDENDQHVLTGAVVMLRSTIRM----GRQLQNVAAQDVSA---FSQIVAVSPKMKH 215 P+ ++ + GAV + + G+ Q + + + A F I+ SP ++ Sbjct: 277 PIIIRGQA-----VGAVATFQPVADIQALEGKIRQKIYKRGLVARLTFDDILGDSPAIRQ 331 Query: 216 VVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESEL 275 + A++ + +++ +LITG+TGTGK++FA + H AS R P++A+NCA++PE+ +ESEL Sbjct: 332 TIAIAREFSKVNSNVLITGETGTGKEIFAQSIHNASSRRKGPFVAVNCAALPENLLESEL 391 Query: 276 FGHAPE--------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDH 327 FG+A GK G FE A+GG++ LDEI E+SP++Q +LLR L + R+G+D Sbjct: 392 FGYAEGAFTGAARGGKMGLFELAHGGTIFLDEISEISPKLQGRLLRVLQEREIMRLGDDR 451 Query: 328 EVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVAR 387 + VDVR+I AT ++L +++Q G+FR+DLYYR++VL L LPPLR+ +DI+PL + F+ Sbjct: 452 VIPVDVRIIAATNRDLYQMMQAGLFRQDLYYRVDVLKLVLPPLRERQEDIIPLMQHFLKL 511 Query: 388 FADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDA 447 + P ++ D +L RY WPGNVR+L+N R G + +DI Sbjct: 512 YCLRSNRPVKEIGPDAQAMLRRYHWPGNVRELRNIAERLAVLASGPVIGARDI------- 564 Query: 448 ATVAVGEDAMEGSLDEITSR-----------FERSVLTQLYR--NYPSTRKLAKRLGVSH 494 A V GE +++E R++L + +Y R A RLG+S Sbjct: 565 AAVLTGETGRRKAINETAEPAAALAGANDVDLNRAILLKALEEADYHYGRA-AARLGISR 623 Query: 495 TAIANKLREYGLSQ 508 T + +L++Y + + Sbjct: 624 TTLWRRLKQYQVGE 637 >UniRef50_D0MEW0 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MEW0_RHOM4 Length = 495 Score = 231 bits (589), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 133/314 (42%), Positives = 183/314 (58%), Gaps = 14/314 (4%) Query: 198 QDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKP 257 Q + F +IV SP M+ V + ++ A +LI G++GTGK+L A A H S R KP Sbjct: 184 QRLHGFDEIVGQSPAMREVFDTMARVLDTDATVLIEGESGTGKELIARAIHYNSERKDKP 243 Query: 258 YLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAK 310 ++ + C S+P++ +ESELFG+ A KKG FE A+GG+V LDE+G++SPRMQ Sbjct: 244 FVVVFCGSLPDELLESELFGYKKGAFTGALSDKKGLFEVADGGTVFLDEVGDLSPRMQTA 303 Query: 311 LLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPL 370 LLR L +G RRVG+ VDVRVI AT K L ELVQ+G FREDLYYRLN + + +PPL Sbjct: 304 LLRVLQEGEIRRVGDTQVRKVDVRVISATNKPLRELVQQGKFREDLYYRLNTIQITVPPL 363 Query: 371 RDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQL 430 R DI L F+ ++A ++ + +L RY WPGNVR+L+N I RA+ Sbjct: 364 RHRRGDIPLLAHHFLDKYAVKKRAHIKGFTPEALELLERYHWPGNVRELENTIERAVVLA 423 Query: 431 DGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRL 490 G + P+D+ LPD D G D E L + R VL L R+ + + A+ L Sbjct: 424 RGELITPEDLRLPDTD------GADPFEPDLP-LKEVERRVVLRTLKRHGGNISETARVL 476 Query: 491 GVSHTAIANKLREY 504 GVS + KL+E+ Sbjct: 477 GVSRRWLHYKLKEW 490 >UniRef50_A1HRK7 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRK7_9FIRM Length = 575 Score = 231 bits (588), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 156/470 (33%), Positives = 236/470 (50%), Gaps = 39/470 (8%) Query: 72 WMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLING 131 W R+ L+A+ + + E + VD KV + N + QL+G + + H + + Sbjct: 115 WEQFRRQQAVLTAVADIVGEALTVVDTSGKVSLWNKRAEQLYGIAPEMILGHPIEEFFSN 174 Query: 132 FNFLRWLESEPQDSHNEHVVINGQNFLMEITPV--------YLQDENDQHVLTGAVVMLR 183 L S S H G + L+ P+ + E D + L Sbjct: 175 LIITAVLASSQAISDKYHQPKPGAHVLINAAPICCDGSIIGSIAAERDITEIVNLTQQLC 234 Query: 184 ST----IRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTG 239 +T + + R+++ + AQ F+ I + ++ + A+K+A+ S P+LI G++GTG Sbjct: 235 ATNAKVMSLKREIKEINAQP-DPFAAICGHNTVLRQEIATARKIAISSVPVLIRGESGTG 293 Query: 240 KDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAP--------EGKKGFFEQAN 291 K++FA A H AS R G P++ +NC +IP ESE FG+ P +GK G FE A+ Sbjct: 294 KEVFARAIHTASRRRG-PFVVVNCGAIPPTLFESEFFGYQPGAFTGADKKGKPGLFELAH 352 Query: 292 GGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGM 351 GG++ LDEIGE+ MQ KLLR L D +F RVG D V VDVR+I AT +NL ++++ Sbjct: 353 GGTLFLDEIGELPKEMQVKLLRVLQDKSFYRVGGDRPVQVDVRIIAATHRNLEAMIEQQE 412 Query: 352 FREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYA 411 FR DLYYRLNV++L LPPLR DI L + +FA G K+ ++ V Y Sbjct: 413 FRHDLYYRLNVVSLYLPPLRQRRDDIPELVHRGIQQFASLHGREIVKVEPEVMAVFLEYD 472 Query: 412 WPGNVRQLKNAIYRALTQLDGYELR----PQD-----ILLPDYDAATVAVGEDAMEGSLD 462 WPGNVR+L N + R + DG L+ P D +LLP T A +L Sbjct: 473 WPGNVRELYNVLERLVILADGGVLKFADLPADLQQFGLLLPKKINLTAA-------QNLP 525 Query: 463 EITSRFERSVLTQ-LYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKKN 511 T R ER+++ Q L + AK+LG+ + + K++ GL+ + Sbjct: 526 AATERMERTIIMQALAAAGFRKAQAAKKLGIPRSTLYYKMQRLGLNTSET 575 >UniRef50_B2A2S4 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Clostridia RepID=B2A2S4_NATTJ Length = 471 Score = 231 bits (588), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 149/451 (33%), Positives = 232/451 (51%), Gaps = 30/451 (6%) Query: 85 LLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQD 144 + + +P PV+ VD K + M N A L + A ++ + + L+S D Sbjct: 18 IFDVIPVPVILVDEKGIIRMINRAFADLLKVSKQQAIGRPAVEVDHNSKWPVVLKSGEFD 77 Query: 145 SHNEHVVI-NGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQL----------- 192 +H G++ ++ P+Y D + ++ G ++L ++ R L Sbjct: 78 IAKKHKFARTGEDAVVHRIPIY--DYDSGEIVGGFGMVLFQNLKELRDLADKNKLLEKKL 135 Query: 193 ----QNVAAQDVSAFS--QIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYA 246 Q V + +S I S KM+ + A+K A +LITG++G GK++FA A Sbjct: 136 DHYKQRVRQIYSTKYSWDNIKTCSSKMEACKQNAKKAARTDLNVLITGESGVGKEIFAQA 195 Query: 247 CHQASPRAGKPYLALNCASIPEDAVESELFGH--------APEGKKGFFEQANGGSVLLD 298 H S R+ P++ +NCA+IPE+ +ESELFG+ + EGK G FE A+ G++ D Sbjct: 196 IHNESHRSDHPFIKVNCAAIPENLLESELFGYQGGAFTGASKEGKPGKFELADKGTLFFD 255 Query: 299 EIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYY 358 EIG+M +MQAKLLR + +G R+G E VDVR+I AT KNL ELV FREDL+Y Sbjct: 256 EIGDMPKKMQAKLLRVIQEGEVERLGGQKEQEVDVRIIAATNKNLEELVATDDFREDLFY 315 Query: 359 RLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQ 418 R+NVLTLN+PPL+D +DI L E F+ E G +++ + VL +Y WPGN+RQ Sbjct: 316 RINVLTLNIPPLKDRKEDIALLAEDFLYETKQEMG-ENKQISQEAVEVLQKYDWPGNIRQ 374 Query: 419 LKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYR 478 LKN I R + + DI + ++ E L+EI + E+ V+ + Sbjct: 375 LKNIIQRLAVNAETTVIEKSDIPIKLLKQLQISESPSYPEEGLNEIVEQVEKKVIRETLE 434 Query: 479 NYPSTRKLAKR-LGVSHTAIANKLREYGLSQ 508 Y + +A L + + + K+++YGL + Sbjct: 435 LYDFNKSMAASILNIPRSTLYRKMKKYGLKE 465 >UniRef50_P30667 Nif-specific regulatory protein n=6 Tax=Bacteria RepID=NIFA_AZOBR Length = 625 Score = 230 bits (587), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 122/256 (47%), Positives = 164/256 (64%), Gaps = 12/256 (4%) Query: 181 MLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGK 240 M+R T RM ++L+ VAA + +V SP M V+ Q ++A + +LI G++GTGK Sbjct: 184 MMRETFRMQKELRPVAA----PINDVVCTSPNMLEVMAQVHRVAPFKSTVLIRGESGTGK 239 Query: 241 DLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGG 293 +L A A H SPR P++ +NCA++PE +ESELFGH A + KG FE A+GG Sbjct: 240 ELIARAIHNMSPRKDAPFIRVNCAALPESLLESELFGHEKGAFTGAQKDHKGRFELASGG 299 Query: 294 SVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFR 353 ++ LDEIG++SP QAKLLR L + F RVG + DVR+ICAT NL E V G FR Sbjct: 300 TLFLDEIGDISPNFQAKLLRVLQEQEFERVGGSKTIKTDVRLICATNLNLEEAVGHGKFR 359 Query: 354 EDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWP 413 DLY+R+NV+T++LPPLR+ QDI PL FVA+FA + G+ + + VL R WP Sbjct: 360 ADLYFRINVVTIHLPPLRERRQDIGPLARHFVAKFAKDNGMAL-VMEDEALEVLNRCTWP 418 Query: 414 GNVRQLKNAIYRALTQ 429 GNVR+L+N I RA TQ Sbjct: 419 GNVRELENCIERAATQ 434 >UniRef50_Q311G4 DNA-binding protein Fis / transcriptional regulator, Fis family n=10 Tax=Desulfovibrionales RepID=Q311G4_DESDG Length = 576 Score = 230 bits (587), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 136/356 (38%), Positives = 209/356 (58%), Gaps = 25/356 (7%) Query: 165 YLQDE--NDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQK 222 YLQ+E +H++T ++ +VA V A + IVA S M+ V+ Q + Sbjct: 226 YLQEEMARQKHMMTQGLIG-----------GDVAENTVQA-ANIVAASKSMRLVLNQVAQ 273 Query: 223 LAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH---- 278 + A L+ G++GTGK+L A A HQASPR P + LNCA++P D VESELFG+ Sbjct: 274 VGPSRATALLRGESGTGKELLAEAIHQASPRRDMPLIKLNCAALPSDLVESELFGYQKGA 333 Query: 279 ---APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRV 335 A + KKG FE A+ G++ LDEIGE+S QAK+LR + + +R+G + + VDVR+ Sbjct: 334 FTGAVQNKKGLFELAHKGTLFLDEIGELSASAQAKVLRAIQEQEIQRLGSEQTISVDVRL 393 Query: 336 ICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVP 395 ICAT ++L ELV+ G FREDLYYR+NV + +PPLR+ +DI+P+ E F+ +A+E Sbjct: 394 ICATHQHLEELVESGSFREDLYYRINVFPVFIPPLRERREDILPVAEHFLKEYAEEYQKS 453 Query: 396 RPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGED 455 +++ +LT+Y WPGN+R+LKN I RA+ D +R + P A + Sbjct: 454 IKRISTPAIDLLTQYHWPGNIRELKNCIERAVLVCDEQVIRTYH-MPPSLQTAESTATDS 512 Query: 456 AMEGSLDEITSRFERSVLTQ-LYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKK 510 ++ S E ++FE+ +L L + + + A+ L VS+ + K+++YG+ KK Sbjct: 513 SL--SFCEAVAKFEQELLVDALKKARGNMLQAARDLRVSYRIVNYKVKKYGIDAKK 566 >UniRef50_A6C0D3 Sigma-54 dependent transcriptional regulator/response regulator n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C0D3_9PLAN Length = 462 Score = 230 bits (586), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 141/362 (38%), Positives = 207/362 (57%), Gaps = 34/362 (9%) Query: 170 NDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSA---------FSQIVAVSPKMKHVVEQA 220 N Q ++ + +RST AA VSA F IV S M+ + E A Sbjct: 107 NSQKLIQSVITCMRST--------RNAAPAVSASQHRPSQRGFENIVGQSGAMQEIFEDA 158 Query: 221 QKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH-- 278 +++A + +LITG++GTGK+L A A H+ SPRA +P++ +N A++PE VESELFGH Sbjct: 159 RRVAQTDSTVLITGESGTGKELIAEAIHRNSPRAAEPFVTVNMAAVPEHLVESELFGHTK 218 Query: 279 -----APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDV 333 A E ++G FE A+ G++ +DEIG+ QAKLLR L + T +G + + HV+V Sbjct: 219 GSFTGATESRRGRFEAAHHGTLFIDEIGDFKLESQAKLLRVLENHTITPIGSNQDRHVNV 278 Query: 334 RVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQG 393 RV+ AT +L +LV+KG FREDLYYRLNV+ L LPPLR+ +DI L + F+ + + Sbjct: 279 RVVAATSHHLEKLVEKGRFREDLYYRLNVINLKLPPLRERNEDIALLVDSFMNQICQQIQ 338 Query: 394 VPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDY--DAATVA 451 RP+L+A+L+ L + WPGNVRQL+N + + L D LPD + V Sbjct: 339 RERPELSAELHQYLVNHTWPGNVRQLRNCLESMVVLSKSGRLTLDD--LPDMLRNGEGVH 396 Query: 452 VGEDAMEG-SLDEITSRFERSVLTQ-LYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQK 509 G EG L+E+ ER+ + Q L RN+ + AK LG+S + KL+ +G+ ++ Sbjct: 397 DGIVIPEGIRLEEL----ERTAIQQTLSRNHGNRTHSAKSLGMSVRTLQRKLKAWGIREQ 452 Query: 510 KN 511 N Sbjct: 453 AN 454 >UniRef50_Q1JWW3 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JWW3_DESAC Length = 658 Score = 229 bits (584), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 162/464 (34%), Positives = 246/464 (53%), Gaps = 62/464 (13%) Query: 82 LSALLEALPEPVLSVDMKSKVDMANPASCQLFG-----QKLDRLRNHTAAQ---LINGFN 133 LS L + + + L +D +V NP + ++FG +KL+R+ TAA LI+ + Sbjct: 215 LSHLFQTMSDGALVIDADGRVIQVNPVARKVFGKELSGEKLNRII--TAADSPDLISSTH 272 Query: 134 FLRWL------ESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIR 187 + L E+EP ++ L+ + P L+D+N +GAVV + IR Sbjct: 273 SCKDLDVVLHTETEPVEA------------LLTVKP--LKDDNSDQ--SGAVVFF-NPIR 315 Query: 188 MGRQLQNV--AAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAY 245 ++L N AQ FS I+ +K + A+K A + +LI G++GTGK+L A Sbjct: 316 KMKKLVNRFGGAQATFHFSDIIGEHDSVKAAINMARKAADNLSHVLILGESGTGKELLAQ 375 Query: 246 ACHQASPRAGKPYLALNCASIPEDAVESELFGH--------APEGKKGFFEQANGGSVLL 297 A H S R P+LA+NCA++P D + SELFG+ +P+G+ G FE A+GG++LL Sbjct: 376 AIHNHSMRRNGPFLAVNCAALPRDLIASELFGYTSGAFTGASPKGRPGKFEMASGGTLLL 435 Query: 298 DEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLY 357 DEIG+M QA LLR L D R+G + + VDVRVICAT KNL++ V KG FR+DLY Sbjct: 436 DEIGDMPLDQQATLLRVLQDKHVTRLGSERAIPVDVRVICATNKNLLDAVSKGHFRQDLY 495 Query: 358 YRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVR 417 YRLNV +++PPLR+ +D+ L + + + RP + + T L Y WPGNVR Sbjct: 496 YRLNVTRIDVPPLRERGRDVELLFRFLLKKISLRLHQARPHVDEAVVTALLHYGWPGNVR 555 Query: 418 QLKNAIYRALTQLDGYELR----PQDIL--------LPDYDAATVAVGEDAMEGSLDEIT 465 +L+N + R + ++ L P++I LPD +V +DA +L ++ Sbjct: 556 ELENVVERMIHTVEEETLHCAHLPREICCETPVGRALPD----SVVTTQDA--ATLKQVV 609 Query: 466 SRFERSVLTQLYRNYPSTRKL-AKRLGVSHTAIANKLREYGLSQ 508 ER +L L + Y L A+ + VS I K+ Y +S+ Sbjct: 610 GEQERRLLVDLLQRYQGNISLIAREMAVSRNTIYRKMHHYNISR 653 >UniRef50_C0GRG2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GRG2_9DELT Length = 464 Score = 229 bits (584), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 146/464 (31%), Positives = 248/464 (53%), Gaps = 29/464 (6%) Query: 73 MPSEREHLALSALLEALPEPVLSVDMKSKVDMANPA--------SCQLFGQKLDRLRNHT 124 + ++R ++ ++E + E +L V + M N A +L GQ + Sbjct: 2 LKNQRVNIYCKDIVEIMQEGLLVVAEDGTIQMVNHALENITGYSKEELLGQPCSIFKCDA 61 Query: 125 AAQLINGFN--FLRWLESEPQDSHNEHVVINGQNFLMEI-TPVYLQDENDQHVLTGAVVM 181 L + + R E + Q H++ +++ + T L D DQ GAV + Sbjct: 62 CKLLRQASSGAWCRLFERKEQVKRKCHLMRKDGSYITVLKTAAVLSD--DQGQTMGAVEI 119 Query: 182 ---LRSTIRMGRQLQNVAA--QDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDT 236 + R+ RQL+ + + S+F IV S +MK++ E +K A P+ I G++ Sbjct: 120 VTDISEMDRLDRQLRQLTRTLDEESSFQGIVGHSRQMKNLFELVEKAAQSDFPVFICGES 179 Query: 237 GTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQ 289 GTGK+L A A H SPRA +PY+ +NCA++ E +ESELFGH A + +KG FE Sbjct: 180 GTGKELVAQAIHNLSPRAEQPYIQVNCAALNESLLESELFGHVKGAFTGALQHRKGRFEA 239 Query: 290 ANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQK 349 A+ G + LDEIG++ MQ KLLR L TF RVG++ + VD+R I AT KNL +L+ + Sbjct: 240 AHKGDIFLDEIGDLPMAMQVKLLRVLETKTFERVGDNRTISVDLRFITATNKNLPDLIAR 299 Query: 350 GMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTR 409 G FREDL+YR+NV+ ++LPPLR+ +D+ L + F+ R + + L+ + + + Sbjct: 300 GGFREDLFYRINVIPIHLPPLRERKEDVPHLVDFFIKRLSRKNKKNIQGLSPEAMRIFMQ 359 Query: 410 YAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDY--DAATVAVGEDAMEGSLDEITSR 467 Y+WPGNVR+LK+A+ + +G +R ++ LP+Y D D + + R Sbjct: 360 YSWPGNVRELKSALEYSYVLAEGDRIRSEN--LPEYLKDGGNDFQAVDLPPAPAENLQQR 417 Query: 468 FERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKKN 511 ++ ++ L ++ + + A+ LG++ + N++R+YG+ +++ Sbjct: 418 QKQELIEALKQSSGNKSQAARLLGINRVTVLNRMRKYGIDLQRD 461 >UniRef50_A5D1E1 Transcriptional regulator n=3 Tax=Bacteria RepID=A5D1E1_PELTS Length = 507 Score = 229 bits (583), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 155/479 (32%), Positives = 246/479 (51%), Gaps = 48/479 (10%) Query: 67 VRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAA 126 VR + + + R L +LEA + + D + + N A ++ G D + A Sbjct: 21 VRNMGILEARRFASELEQVLEASHDGIFITDGQGVILRVNSAWERICGISRDFVVGKNAQ 80 Query: 127 QLIN-GFNFLRWLESEP--------------QDSHNEHVVINGQNFLMEITPVYLQDEND 171 ++++ GF W ES + + E V GQ + PV + N Sbjct: 81 EMVDKGF----WSESAAICALKAKKEVTIMLKMTKGEKV---GQKIMATGIPVMDDEGNI 133 Query: 172 QHVLTGA-----VVMLRSTIRMGRQLQNVAAQDVSA-------FSQIVAVSPKMKHVVEQ 219 + V+ +V LR + +QL A ++ + IVA SPK K V++ Sbjct: 134 KRVVVNVRDITEIVNLRDQLEETQQLNEKYAAELEQMRIQHVQYDNIVASSPKTKRVLDM 193 Query: 220 AQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA 279 A ++A + + +LITG++G GK++ A H S R+ P + +NC +IPE+ +ESELFG+ Sbjct: 194 AAQVAKVDSTVLITGESGVGKEIVANVIHCLSHRSKGPLIKINCGAIPENLLESELFGYE 253 Query: 280 P--------EGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHV 331 P +GK G FE A G++ LDE+GE+S +Q KLLR L D RVG + V Sbjct: 254 PGAFTGARKQGKPGMFELAEKGTLFLDEVGELSLNLQVKLLRVLQDHEVLRVGGLKPIPV 313 Query: 332 DVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADE 391 DVR++ AT K+L+E+V+K FR+DLYYRLNV+++ +PPLR+ +DI L F+ + + Sbjct: 314 DVRIVAATNKDLMEMVRKEKFRDDLYYRLNVVSIEIPPLRERREDIPLLALHFLEKINKK 373 Query: 392 QGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVA 451 G + + A D+ L+ Y WPGN+R+L+N I R + E+R I LP + Sbjct: 374 YGFNK-RFAPDVIDRLSAYPWPGNIRELENVIERVMVMTKSDEIRT--IHLPGNIKNLSS 430 Query: 452 VGEDAMEGS---LDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 + D M L + E+ ++ Q + Y STRK+A+ L V+ + I K+++Y LS Sbjct: 431 LQNDIMFSEIMPLKKAVEHVEKHLIEQALKKYGSTRKVARALKVNQSTIVRKIKKYKLS 489 >UniRef50_A8S4D9 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S4D9_9CLOT Length = 645 Score = 228 bits (582), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 130/352 (36%), Positives = 208/352 (59%), Gaps = 22/352 (6%) Query: 177 GAVVMLRSTIRM----GRQLQNVAAQDVSA---FSQIVAVSPKMKHVVEQAQKLAMLSAP 229 GA+++ R T ++ + Q++A Q ++A F I+ SP ++ + A++ + + + Sbjct: 299 GAIIVARYTEQIIEAETKIRQSLAKQGLTAKYSFDDIIGSSPAIRENILMAKRYSRVDSN 358 Query: 230 LLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAP--------E 281 +LI G+TGTGK+LFA++ H+ S R+ +P++ALNCA++PE+ +ESELFG+ P Sbjct: 359 VLIVGETGTGKELFAHSIHRESRRSAEPFVALNCAALPENLLESELFGYEPGAFSGASKN 418 Query: 282 GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQK 341 GK G FE A+ G++ LDEIGE+ +QAKLLR L + RR+G + VDVRVI AT Sbjct: 419 GKTGLFELAHKGTIFLDEIGEIPISLQAKLLRVLQEREIRRIGSNRVQPVDVRVISATNI 478 Query: 342 NLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAA 401 N+ E +Q+G FR DLYYRLN+L + +PPLR+ DI + + ++ RFA E G P P+L+ Sbjct: 479 NIEEKIQEGQFRADLYYRLNLLDITIPPLRERGDDIREMVDFYLTRFACEMGKPIPRLSK 538 Query: 402 DLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSL 461 + ++T Y WPGNVR+L+N R + D E+ ++I + E + G+ Sbjct: 539 EAVDLMTHYGWPGNVRELRNICERLIVLSDTTEIGLREIQM----LKIFRKKEGPLPGTQ 594 Query: 462 --DEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKKN 511 D+ T + E ++ + + +AK LGVS T + ++ + QKK Sbjct: 595 TPDKETDQPETGIVYANLKPRKKKQDIAKELGVSRTTLW-RMEKMAREQKKQ 645 >UniRef50_A8ZU14 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=A8ZU14_DESOH Length = 468 Score = 228 bits (582), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 133/341 (39%), Positives = 201/341 (58%), Gaps = 32/341 (9%) Query: 185 TIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFA 244 T+ RQ + + +D F +IV PKMKH+ +++A +LITG++GTGK+L A Sbjct: 125 TVEQERQALDNSLEDHLYFERIVGSHPKMKHIYNMVRQVAQTRTRILITGESGTGKELIA 184 Query: 245 YACHQASPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLL 297 A H+ S RA P++ +NC IPE+ +ESELFGH A KKG F A+ G++ L Sbjct: 185 RAIHEQSDRANHPFVVVNCGGIPENLMESELFGHRKGSFTGAVMDKKGLFTIAHKGTIFL 244 Query: 298 DEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLY 357 DEIGE+S +Q KLLR + DG F++VG E+ VD R++ AT KNL + V G FREDL+ Sbjct: 245 DEIGELSMPLQVKLLRVVQDGAFKQVGGTEEISVDARILSATNKNLSQEVIDGNFREDLF 304 Query: 358 YRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVR 417 YRLNV+ LN+PPLR+ DI L + FV +F+ + G KL++ +L +Y++PGNVR Sbjct: 305 YRLNVIELNVPPLRERKSDIRVLAQFFVEKFSKDLGKEVIKLSSYALDMLEKYSFPGNVR 364 Query: 418 QLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVG---------------EDAMEG-SL 461 +L+N I R++ L +I+LP ++ ++AV E+ +G +L Sbjct: 365 ELENLIERSVA------LSTTNIILP--ESLSLAVHKRRWIEGVPGRRFDLEEVTKGVAL 416 Query: 462 DEITSRFERSVLTQ-LYRNYPSTRKLAKRLGVSHTAIANKL 501 DEI + ER+ L + L + + + A+ LG+S + +L Sbjct: 417 DEILADIERAYLKKALESSGGNKNRAAELLGISFRSFRYRL 457 >UniRef50_C6XRL0 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Alphaproteobacteria RepID=C6XRL0_HIRBI Length = 498 Score = 228 bits (580), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 132/349 (37%), Positives = 196/349 (56%), Gaps = 39/349 (11%) Query: 202 AFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLAL 261 F ++A +P M+ VV Q+ A + P+LITG++G GK++ + AS RAGKP++ + Sbjct: 146 GFDDMIAGAPLMRQVVRLGQRAAKSNIPILITGESGVGKEVASQCIQSASERAGKPFITV 205 Query: 262 NCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRF 314 NC +IPE+ VES LFGH A E K G F +A+GG++ LDE+GE+ MQ KLLR Sbjct: 206 NCGAIPENLVESILFGHEKGAFTGAHEKKLGKFAEADGGTLFLDEVGELPLDMQVKLLRV 265 Query: 315 LNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCP 374 L +G VG VDVR+I AT ++L + V +G FREDLYYRLNV + +P LRD Sbjct: 266 LQEGEVDAVGSRKPTKVDVRIISATNRDLAQAVSEGRFREDLYYRLNVFPIEMPSLRDRK 325 Query: 375 QDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYE 434 +D+ L + F+ RF ++G+ + + ++ + WPGNVRQL+N+I+RA+ +G E Sbjct: 326 EDLPALVDHFIRRFNAQEGMSITGASLETMGMIAAHDWPGNVRQLENSIFRAMILSEGDE 385 Query: 435 LRPQDI-----LLPDY-------------DAATVAVGEDAMEGSLDEITS---------R 467 L+P D L P+Y DAAT A ++ G I Sbjct: 386 LQPVDFPHISGLTPNYEILKTPNNGASISDAATTATQLNSPLGGPVSIVDDNGELRPLES 445 Query: 468 FERSVL---TQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKKNEE 513 ER ++ LY + S ++A+RLG+ + + K+REY L + +EE Sbjct: 446 VERDLIQYAIDLYSGHMS--QVARRLGIGRSTLYRKVREYDLRVRDDEE 492 >UniRef50_A8S1K8 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S1K8_9CLOT Length = 637 Score = 227 bits (579), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 130/365 (35%), Positives = 205/365 (56%), Gaps = 18/365 (4%) Query: 152 INGQNFLMEITPVYLQDENDQHVLT---GAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVA 208 INGQN+ ++ + + + +Q ++ G + R+ +L+N F IVA Sbjct: 276 INGQNYYVKKSTA--RSKTNQRIIAVFQGTHNIQYQEQRVRSELRNNGFMAKYTFEDIVA 333 Query: 209 VSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPE 268 S MK ++++A+ A +A +LI G++GTGK+L A + H ASPR +P++A+NCA+IP Sbjct: 334 ESALMKSLMDKARLYASTNAGILINGNSGTGKELLAQSIHNASPRHNQPFVAVNCAAIPA 393 Query: 269 DAVESELFGH--------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTF 320 +ESELFG+ GK+G FE A+ G++ LDEI M +Q+ LLR + + Sbjct: 394 SLLESELFGYEEGAFSGAKKGGKRGLFELAHKGTIFLDEINSMPIELQSVLLRTIQEKEI 453 Query: 321 RRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPL 380 RRVG ++VD+R+I A KN+ EL+ G FR DLYYRLN L L +P L +DI PL Sbjct: 454 RRVGAQKNIYVDIRIISACNKNMEELIADGKFRADLYYRLNTLKLTMPDLETRKEDIPPL 513 Query: 381 TELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDI 440 F+ R++ + VP P L+ + + +L + +WPGNVR+L+N ++R + D Sbjct: 514 CGYFLKRYSAKYSVPIPALSPEDSEILLKRSWPGNVRELENTMHRYVILSSLQHCSVNDC 573 Query: 441 L--LPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIA 498 L P AA+ + +EG+L ++ R L + N+ S K AK+LG+S + + Sbjct: 574 LDGTPPEQAASSGASQPPLEGTLAQMELALIRKCLEE---NHGSREKTAKQLGISRSTLW 630 Query: 499 NKLRE 503 KL + Sbjct: 631 KKLSQ 635 >UniRef50_A1VAP6 Sigma54 specific transcriptional regulator, Fis family n=7 Tax=Bacteria RepID=A1VAP6_DESVV Length = 473 Score = 227 bits (578), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 135/328 (41%), Positives = 188/328 (57%), Gaps = 25/328 (7%) Query: 204 SQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNC 263 SQ V S M+ V++ Q++A A +LI G+TG GKD+FA H+ SPR+ K +L ++C Sbjct: 146 SQPVFESEVMQQVLDLLQRVAATDANILILGETGVGKDVFARLAHEYSPRSSKMFLKVDC 205 Query: 264 ASIPEDAVESELFGHAP--------EGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFL 315 SI E+ +ESELFG+ P +GK G+FE A+GG+V LDEIGE+ MQAKLLR L Sbjct: 206 GSIAENLIESELFGYVPGAFSGASSKGKAGYFEIADGGTVFLDEIGELPLPMQAKLLRVL 265 Query: 316 NDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQ 375 D RVG VDVR+I AT ++L E + G FR DLYYRLNV L+LPPLR+ Q Sbjct: 266 QDREVMRVGSSQARKVDVRIIAATNRDLAEDAKAGKFRSDLYYRLNVAVLDLPPLRERQQ 325 Query: 376 DIMPLTELFVARFADE--QGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGY 433 DI+PL E F+ RF + + + PK L Y WPGNVR+++N I + +G+ Sbjct: 326 DIIPLVERFLDRFNAKYRRNMTLPK---GTRQALQNYKWPGNVREMQNLIQSLVVTCEGH 382 Query: 434 ELRPQDILLPDY--------DAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRK 485 ++P+ LP + A T +DA L EI + ER +L + R + S K Sbjct: 383 SIKPEH--LPPHIQKAARNRTAYTPPAPDDAR--PLKEIMADIEREILEEAVRTHGSVCK 438 Query: 486 LAKRLGVSHTAIANKLREYGLSQKKNEE 513 +A+ +S T + KLR L+ +E Sbjct: 439 VARMYKISRTTLFRKLRGSSLAGVSGDE 466 >UniRef50_C9RM62 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RM62_FIBSS Length = 484 Score = 227 bits (578), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 132/333 (39%), Positives = 191/333 (57%), Gaps = 32/333 (9%) Query: 192 LQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQAS 251 L+NV +D IV S M V+ A KL+ L P++I G+TGTGK++ A H+ S Sbjct: 165 LKNVVRKD-----GIVYSSKAMVDVIAMADKLSPLPLPVIIRGETGTGKEVMARYIHKHS 219 Query: 252 PRAGKPYLALNCASIPEDAVESELFGHAP-------EGKKGFFEQANGGSVLLDEIGEMS 304 PRA KP++A+NC +IPE +ES +FGHA E KKGFFE+A+GG++ LDEIGE+ Sbjct: 220 PRAEKPFIAVNCGAIPEHLMESLMFGHAKGSFTGAIENKKGFFEEADGGTIFLDEIGELP 279 Query: 305 PRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLT 364 MQ KLLR L + RVG++ E+ V+VRVI AT +L E V++ FREDLY+R+ VL Sbjct: 280 LNMQVKLLRVLQEKHITRVGDNREIPVNVRVISATHVDLEEAVREKRFREDLYFRIQVLP 339 Query: 365 LNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIY 424 L LPPLRD QD++ L E F+ R+ E G + L+ + L Y WPGNVR+L+N + Sbjct: 340 LELPPLRDRGQDVVLLAENFIQRYGAEYGRGKFHLSRNAEKALLGYHWPGNVRELENRVQ 399 Query: 425 RALTQLDGYELRPQDILLPDYDAATVAVGEDAMEG-------SLDEITSRFERSVLTQLY 477 + L Q ++P+D+ G D M+G +L E ER V+++ Sbjct: 400 KGLVQAVHGVIQPKDL------------GLDDMQGQAKESPRTLKEAREAVEREVISRAL 447 Query: 478 RNYPSTRKLAKR-LGVSHTAIANKLREYGLSQK 509 ++ + LA LG+ + + GL ++ Sbjct: 448 KDTNANLTLASTILGIDRKVLREIMERLGLKKE 480 >UniRef50_B8F9K7 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8F9K7_DESAA Length = 464 Score = 226 bits (577), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 127/320 (39%), Positives = 182/320 (56%), Gaps = 15/320 (4%) Query: 203 FSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALN 262 F+ IV SP+M+ + E K + +A +LITG++GTGK+L A A H P P++A+N Sbjct: 142 FTNIVGQSPQMQILFESIHKASKSTANVLITGESGTGKELAAKAVHYNGPLKEGPFVAVN 201 Query: 263 CASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFL 315 C++ +ESELFGH A G FE AN G++ LDE+G++ +Q KLLR L Sbjct: 202 CSAFSSGTLESELFGHVKGAFTDAHRDHMGRFELANKGTLFLDEVGDIPADIQVKLLRVL 261 Query: 316 NDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQ 375 D TF RVG +H D R++ AT ++L +LV+KG FREDL+YRLNV+ + P LR+ P+ Sbjct: 262 QDKTFERVGAQEPIHSDFRLVAATNRDLKDLVRKGKFREDLFYRLNVIGMTTPALREHPE 321 Query: 376 DIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYEL 435 DI L F+ R+ G L+ ++ Y WPGNVRQL+NAI A DG + Sbjct: 322 DIPLLISHFLKRYGQVGGRSIKTLSMHAMKIMQEYRWPGNVRQLENAIESAAAMCDGSMI 381 Query: 436 R----PQDILLPDYDAATVAVGEDAMEGSLDEITSRFERS-VLTQLYRNYPSTRKLAKRL 490 R P +I P + + EDA G+L E+ R E+ +L L +N A+ L Sbjct: 382 RTADLPLEITAPQSED---PLREDAYRGTLPEVVERIEKHMILRALEQNQWVKAHAARTL 438 Query: 491 GVSHTAIANKLREYGLSQKK 510 GVS ++ K+ YGL++ K Sbjct: 439 GVSERVVSYKMANYGLTKDK 458 >UniRef50_C1MDK5 Sigma-54 dependent transcriptional regulator n=3 Tax=Enterobacteriaceae RepID=C1MDK5_9ENTR Length = 400 Score = 226 bits (575), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 128/312 (41%), Positives = 182/312 (58%), Gaps = 13/312 (4%) Query: 203 FSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALN 262 FS I+ S M ++E+A K++ +LI GDTGTGK+L A A H + R P++ +N Sbjct: 90 FSDIICSSQSMHALIEKAIKISDSKYTVLIRGDTGTGKELLARAIHNSGQRRFYPFIPVN 149 Query: 263 CASIPEDAVESELFGHAP--------EGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRF 314 C+++PE +ESE FG+ +GKKG FE A+ G++ LDE GEMS +QAKLLR Sbjct: 150 CSALPESLMESEFFGYEKGAFSGADCKGKKGLFEMADKGTLFLDEFGEMSLSLQAKLLRV 209 Query: 315 LNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCP 374 L DG RRVG + V+VR+I AT NL E+V++ + R DLYYR+NVL+L +PPLR+ P Sbjct: 210 LQDGGIRRVGGAQIIPVNVRIIVATNANLEEMVEQRLLRADLYYRINVLSLTIPPLRERP 269 Query: 375 QDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYE 434 QDI L FV ++A E R L L + WPGNVR+L+N I R + + Sbjct: 270 QDISLLIRHFVQKYAKEFQ-RRIILDKACFDALHHHTWPGNVRELENTIIRLMLMAESDV 328 Query: 435 LRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSH 494 + +++ + + AV E E ER ++ Q+ + S+R +AK LGVSH Sbjct: 329 ITREELGMVNLP----AVERGPTERPFKEQVLCAERQLIEQMVEDNVSSRHIAKALGVSH 384 Query: 495 TAIANKLREYGL 506 T + NK+R Y L Sbjct: 385 TTVLNKIRGYQL 396 >UniRef50_D0LTW0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LTW0_HALO1 Length = 472 Score = 226 bits (575), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 134/326 (41%), Positives = 191/326 (58%), Gaps = 23/326 (7%) Query: 202 AFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLAL 261 F I+A S +M+ ++ ++A +A +L+TG++GTGK+L A A H SPRA ++A+ Sbjct: 155 GFDNIIAHSSEMRELLSLVSRVATSTASVLLTGESGTGKELVARAIHYNSPRAEGAFVAV 214 Query: 262 NCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRF 314 N A++PE VESELFGH A + K G F +A+GG++ LDEI EM+ +QAKLLR Sbjct: 215 NLAAVPEALVESELFGHTKGAFTDARQSKAGLFNEADGGTIFLDEIAEMAAPLQAKLLRA 274 Query: 315 LNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCP 374 L + R VG VDVRV+ AT ++L E + +G FREDLYYRLNV+ + LPPLR P Sbjct: 275 LQEQEIRPVGATRPQRVDVRVVAATNRDLQERMAEGDFREDLYYRLNVIQIELPPLRRRP 334 Query: 375 QDIMPLTELFVARFADEQGVPRP-KLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGY 433 DI+PL E F+A + PR +LAA+ +L Y WPGNVR+L N I R LT G Sbjct: 335 DDILPLAEHFLALASARLTPPRSVRLAAETQRILHSYPWPGNVRELANVIERGLTLCRGD 394 Query: 434 ELRPQDILLPDY-------DAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKL 486 + P+D LP++ D + AV A +L ++ F +L + N T Sbjct: 395 LIAPED--LPNHVRERKSNDFLSAAV---ARRMNLAQLEREFIERILKEEGGNKTRT--- 446 Query: 487 AKRLGVSHTAIANKLREYGLSQKKNE 512 A+RLG+ + KL EY + K+++ Sbjct: 447 AQRLGLDRKTLYRKLDEYARADKRDD 472 >UniRef50_C8VXU8 Putative sigma54 specific transcriptional regulator n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VXU8_DESAS Length = 710 Score = 225 bits (574), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 122/313 (38%), Positives = 189/313 (60%), Gaps = 17/313 (5%) Query: 205 QIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCA 264 +V S KM+++++ +LA + + +LITG++GTGK+L A H S R KP++ +NC Sbjct: 383 NLVVTSAKMRNLLDMVVRLASVDSTVLITGESGTGKELIAEIIHSNSSRRDKPFIKVNCG 442 Query: 265 SIPEDAVESELFGH--------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLN 316 +IPE+ +ESELFG+ EGK G+ E A+GG++ LDEIGEM +Q K+LRFL Sbjct: 443 AIPENLLESELFGYDGGAFTGAKKEGKSGYIELASGGTLFLDEIGEMPLNLQVKMLRFLQ 502 Query: 317 DGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQD 376 + RVG + ++VDVR++ AT +NL+E+VQ+ FREDLYYRLNV+ +++PPLRD D Sbjct: 503 NKEIIRVGGTNYINVDVRIVTATNRNLLEMVQQKQFREDLYYRLNVVPVHIPPLRDRKDD 562 Query: 377 IMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYR-ALTQLDGYEL 435 I PL F+ F + + K++ + +L +Y WPGN+R+L+N I R +T +D + Sbjct: 563 IPPLAAHFIEVF-NHKYKKNKKISPGVVDILMQYDWPGNIRELENLIERMVVTTMDDI-I 620 Query: 436 RPQDILLPDYDAATVAVGEDAMEGS----LDEITSRFERSVLTQLYRNYPSTRKLAKRLG 491 +D LP Y V + + S L + E+ +L + Y Y +TR++AK L Sbjct: 621 TSED--LPSYLRDKVGISSSYIIVSGIVPLRDAVESVEKQLLERAYAKYRTTRQMAKELK 678 Query: 492 VSHTAIANKLREY 504 V + + K +Y Sbjct: 679 VDASTVVRKAAKY 691 >UniRef50_C1PBV8 Putative sigma54 specific transcriptional regulator n=1 Tax=Bacillus coagulans 36D1 RepID=C1PBV8_BACCO Length = 553 Score = 225 bits (574), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 144/445 (32%), Positives = 235/445 (52%), Gaps = 37/445 (8%) Query: 79 HLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWL 138 HL L++++ EP VD ++ N LF ++ L Q I +W Sbjct: 123 HLETRKLIQSITEPFCLVDQDGRIQEMNEHMASLFRKRRTTLMGEKITQYITK---EKWE 179 Query: 139 ESEPQDSHNEHVV----INGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQN 194 + +E VV I G+ + I V +N Q +++ +++ Q Sbjct: 180 SIKSGKEKDETVVQVPRIKGEAYFATIQLV----KNKQGIVSYMILLKSKKTEKPEQ--- 232 Query: 195 VAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRA 254 A + + F I+ VS +K ++ A++++ +++ G++GTGK++FA A H S R Sbjct: 233 -AGRRLYHFEDILGVSEILKQTIQSAKRVSKSDVTIMLRGESGTGKEMFAQAIHHESERK 291 Query: 255 GKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRM 307 +P++ALNCA+IPE+ +ESELFG+ A + K G FE AN G++ LDEIG+MS + Sbjct: 292 NQPFVALNCAAIPENLLESELFGYEKGAFTGAEKEKPGRFELANHGTLFLDEIGDMSLYL 351 Query: 308 QAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNL 367 QAK+LR L + T R+G + +DVR+I AT +NL EL++KG FREDLYYR++V+ + + Sbjct: 352 QAKILRVLQEKTLERIGSNKSRKIDVRIITATHRNLEELIRKGEFREDLYYRISVIPIYI 411 Query: 368 PPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRAL 427 PPLR +D+ L E F+ +F+ + LAA+ L +Y WPGN+R+L+N + + Sbjct: 412 PPLRARKEDLPILIEHFIQKFSKDLNRDSKNLAAETLDRLMQYDWPGNIRELQNVVRHFV 471 Query: 428 TQLDGYELRPQDILLPDYDAATVAVGEDAMEGSL-----DEITSRFE-RSVLTQLYRNYP 481 EL+ D + + +++ G + S+ + +R E R VL L RN Sbjct: 472 ------ELQIGDTVTLESLPSSLQRGAKSFPPSVKPKRTNHYQTRLEKRKVLELLERNGW 525 Query: 482 ST---RKLAKRLGVSHTAIANKLRE 503 ST +K A LG+S + L++ Sbjct: 526 STEGKKKTAADLGISLATLYRYLKK 550 >UniRef50_C0GH67 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GH67_9FIRM Length = 569 Score = 225 bits (574), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 150/451 (33%), Positives = 236/451 (52%), Gaps = 31/451 (6%) Query: 82 LSALLEALPEPVLSVDMKSKVDMANPASCQLFG-QKLDRLRNHTAAQLINGFNFLRWLES 140 L A+L ++ E + D + NPA ++ G + R+ + +G ++ Sbjct: 124 LWAILNSVQEAIEVADNSGLIKYTNPAFTRVTGIPEAQRVGKNIFEASPHGALAQALVKQ 183 Query: 141 EPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLR---STIRMGRQLQ---- 193 +P + V +G + P+ ++ E + GAVV+ + +++ +LQ Sbjct: 184 KPVVGYRSKVGGSGVEVISNAAPILVEGE-----VEGAVVVFQPITDILKLMDELQKSTT 238 Query: 194 ---NVAAQ------DVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFA 244 N+ A+ F + S ++ A+K A +P+L+TG++GTGK+L+A Sbjct: 239 IIENLYAKIDQITGSKYTFDDLTGSSKVFAATIDMAKKAAKSDSPVLLTGESGTGKELYA 298 Query: 245 YACHQASPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLL 297 +A HQAS R GKP++ + CAS+PE+ +ESELFGH A + K G E ANGG++ L Sbjct: 299 HAIHQASQRRGKPFIKIGCASVPEELLESELFGHEKGAFTGAVKTKLGKVELANGGTLFL 358 Query: 298 DEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLY 357 DEIGEM+P +Q KL+R L D F RVG + DVRVI AT +L LV+KG FRE+LY Sbjct: 359 DEIGEMNPYLQGKLMRLLQDQEFERVGGSETIRSDVRVITATNIDLKSLVRKGRFREELY 418 Query: 358 YRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVR 417 + LNV+ LNLPPLR +DI L E F+ + + G +A D +L+ Y WPGN+R Sbjct: 419 FLLNVIELNLPPLRQRREDIPVLVEHFIGKLNRKLGKKVRGVAPDALQLLSGYDWPGNIR 478 Query: 418 QLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAME-GSLDEITSRFERSVLTQL 476 +L+N I RA+ ++ E+ + P T A E LD++ ++ L + Sbjct: 479 ELENVIERAMVSVE-TEVIGRQHFSPYIGQFTNAETTQCTEIVPLDKMEQMMLKAALARY 537 Query: 477 YRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 + +K A+ L +S + NKL++Y S Sbjct: 538 GESLEGKKKAAQALNISLATLYNKLKKYKAS 568 >UniRef50_B0K647 Sigma54 specific transcriptional regulator, Fis family n=12 Tax=Firmicutes RepID=B0K647_THEPX Length = 544 Score = 225 bits (574), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 147/446 (32%), Positives = 234/446 (52%), Gaps = 32/446 (7%) Query: 80 LALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLE 139 +A + ++ ++ D + + N A+ + G +D+ ++++ L+ Sbjct: 109 IAYEKIFNSIGSGLIVTDENGAIMIFNKAAESITGINMDQAIGKKIQEVMSDIKIADVLK 168 Query: 140 SEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQD 199 + ++ N+ + I L ITP+Y + + GAV++ ++ L+N +D Sbjct: 169 T-GKEEMNKKLKIGTNVVLTNITPIYTGTK-----IEGAVIVFYDFPQI-EYLENELKRD 221 Query: 200 VS---AFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGK 256 AF I+ S K+K + A K A + +LI G++GTGK+L A A H AS R K Sbjct: 222 RKLDKAFDIIIGNSGKLKDALTIASKAAETDSTVLIRGESGTGKELVANAIHYASKRKDK 281 Query: 257 PYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQA 309 P++ +NCA+IP +ESELFGH A K G FE A+GG++ LDEIG++ P +Q Sbjct: 282 PFIRVNCAAIPVTLLESELFGHERGAFTGAVTQKIGKFELADGGTIFLDEIGDIPPEIQV 341 Query: 310 KLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPP 369 KLLR + + F RVG + VDVR+I AT K+L + +++G FREDLYYRLNV+ + LPP Sbjct: 342 KLLRVIQEKEFERVGGIKTIKVDVRIIAATNKDLEKAIKEGTFREDLYYRLNVIPVILPP 401 Query: 370 LRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQ 429 LR+ DI L E F+ + + K+ L Y WPGN+R+L+N I R +T Sbjct: 402 LRERRGDIPLLVEHFIEKLNKKLNKNVKKVTKKAMQALIYYDWPGNIRELENIIERCITL 461 Query: 430 LDGYELRPQDILLPDY---------DAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNY 480 D + +D LP Y D + +GE++ +++E +E ++ + Y Sbjct: 462 SDTDYIDYED--LPQYIRNETTTVSDDDIIYLGENSELLTMEE----YEYKIIKAAIQRY 515 Query: 481 PSTRKLAKRLGVSHTAIANKLREYGL 506 S K K LG++H IA K R++GL Sbjct: 516 KSFNKAGKVLGLTHKTIAAKARKFGL 541 >UniRef50_C9KM56 Sigma-54 dependent transcriptional regulator/sensory box protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KM56_9FIRM Length = 560 Score = 224 bits (572), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 155/491 (31%), Positives = 239/491 (48%), Gaps = 42/491 (8%) Query: 41 LNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKS 100 + F E +F +M E I GV + + ER L +LE++ + + VD Sbjct: 86 VRFLESDF-----IMNEASEIHGVDKLLHENALMQER----LQMILESVQDGICVVDRSG 136 Query: 101 KVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLME 160 +V NP+ ++ + + + + N L S + +G + Sbjct: 137 EVTYVNPSYLRIVHKTPEMVVGQNVFETAADGNRCAVLRSGIARIGSIRHKKDGTTIVAN 196 Query: 161 ITPVYLQDENDQHVLTGAVVMLRSTIRMG---RQLQNVAAQ-------------DVSAFS 204 + P+++ E + G V +++ + +L V+A+ AF+ Sbjct: 197 VNPIFVDGE-----IAGVVSVIKDITEIQTLMERLSQVSAKAEYLEQELLRTKKTAQAFA 251 Query: 205 QIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCA 264 + S K+ V+ A K A SA +LI G++GTGK++ A H AS R P++ +NC Sbjct: 252 NYIGKSGKVVDVLALASKAADSSANVLIRGESGTGKEVIAEGIHYASGRRRGPFIRVNCG 311 Query: 265 SIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLND 317 +IP +ESELFGH A K G FE AN G++ LDEIGE+ +Q KLLR L Sbjct: 312 AIPGALLESELFGHEKGAFTGAVRRKLGKFELANHGTIFLDEIGELDKNLQVKLLRVLQQ 371 Query: 318 GTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDI 377 F RVG + +HVDVR+I AT ++L +V++G FR+DLYYRLNV+ + LPPLRD P DI Sbjct: 372 KEFDRVGGEETIHVDVRIIAATNRDLEAMVREGTFRDDLYYRLNVIPIILPPLRDRPDDI 431 Query: 378 MPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRP 437 L E F+ + + E + D + Y WPGNVR+L+N I R +T +D + Sbjct: 432 PLLVEHFIEKISKENKKDVRGITPDAMQMFMHYRWPGNVRELENVIERVITLMDTDLITA 491 Query: 438 QDILLPDYDAATVAVGEDAMEGSLDEIT--SRFERSVLTQLYRNYPSTRKLAKRLGVSHT 495 +LP Y +A G + + D + +E+ ++ R S AK L +SH Sbjct: 492 A--MLPSYIKGDIA-GREVQSLADDTVLPWEEYEKQIIANALRQGTSFNGAAKLLRISHK 548 Query: 496 AIANKLREYGL 506 +A K R+YGL Sbjct: 549 TVAAKARKYGL 559 >UniRef50_C9XRA6 Probable sigma54-dependent transcriptional regulator n=7 Tax=Clostridium difficile RepID=C9XRA6_CLODC Length = 605 Score = 224 bits (571), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 150/464 (32%), Positives = 245/464 (52%), Gaps = 51/464 (10%) Query: 75 SEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNF 134 S R+ + ++E + + V+ +D+ SK+ N + + KLD +N N Sbjct: 156 SSRKMDMMIEIIENVEKGVIILDINSKISYINNIALK----KLDIYKNIIE-------NI 204 Query: 135 LRWLESEPQDSHNEHVVINGQNFLM----EITPVY-LQDENDQHVLTGAVVMLRSTIRMG 189 + + E + +E + I+ N + +I PVY ++ D+ ++ ++ I Sbjct: 205 VNIVSVESSSNGHELLEIDIDNKIYNINAKIIPVYPYINQYDK-----IIIFDKTYINHK 259 Query: 190 RQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQ 249 + + S I+ S M V E+ +KLA ++ +LITG++GTGK+L A A H Sbjct: 260 GHGKVNSGWGNSDIESIIGNSEAMLKVKERTKKLAKSNSTVLITGESGTGKELIARAIHA 319 Query: 250 ASPRAGKPYLALNCASIPEDAVESELFGH--------APEGKKGFFEQANGGSVLLDEIG 301 R KP++A+NCA+IPE+ +ESELFG+ + GK G FE AN G + LDEIG Sbjct: 320 EGSRWNKPFIAINCAAIPENLLESELFGYIKGAFSGASSGGKVGKFELANEGVIFLDEIG 379 Query: 302 EMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLN 361 ++S +QAKLLR L + F R+G + + +D+RVI AT KNL++LV +G FR+DLYYRLN Sbjct: 380 DLSMPLQAKLLRVLQERKFARIGSNKLIDLDIRVIAATNKNLLKLVNEGKFRDDLYYRLN 439 Query: 362 VLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKN 421 V+ +NLPPLR+ DI + F ++++ E G+ K+ ++ +L Y WPGN+R+L+N Sbjct: 440 VIPINLPPLRERKDDIEAIMMKFASKYSLELGIQLNKIEENVMNMLINYNWPGNIRELEN 499 Query: 422 AIYRALTQL--DGY---ELRPQDILLPDYDAATVA-------VGEDAMEG---------- 459 A+ + + DG ++ P DIL V + ED + G Sbjct: 500 AVEYMMNLVGDDGIIYKDMLPLDILNYYNINGNVCKNKDINIIFEDDIVGGIVENQERIL 559 Query: 460 SLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLRE 503 S+ E+ + +L + R+ + +K+AK LG+ + KL E Sbjct: 560 SIKELELTYINKLLNKYGRDTKTKKKIAKDLGIGLATLYRKLEE 603 >UniRef50_Q07T09 Two component, sigma54 specific, transcriptional regulator, Fis family n=20 Tax=Alphaproteobacteria RepID=Q07T09_RHOP5 Length = 460 Score = 224 bits (570), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 126/311 (40%), Positives = 184/311 (59%), Gaps = 19/311 (6%) Query: 213 MKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVE 272 M VV+ AQ++A A +++TG++GTGK++ A H S RA KP++++NCA+IPE +E Sbjct: 127 MAKVVKLAQQIATSDASVMVTGESGTGKEVLARYVHSRSNRAKKPFISINCAAIPEHLLE 186 Query: 273 SELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGE 325 SELFGH A + G FE+A GG++LLDEI EM R+Q+KLLR + + RVG Sbjct: 187 SELFGHEKGAFTGAVARRIGKFEEAGGGTLLLDEISEMDVRLQSKLLRAIQERVIDRVGG 246 Query: 326 DHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFV 385 V +D+R+I + +NL + V++G FREDL +RLNV+ L +PPLR+ P DI+ L + F Sbjct: 247 TKPVPIDIRIIATSNRNLQDAVREGSFREDLLFRLNVVNLKIPPLRERPADILELAQHFA 306 Query: 386 ARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDY 445 ++AD GVP +AA+ VLT W GNVR+L+N ++RA+ G E+ + I+ PD Sbjct: 307 KKYADANGVPLRPIAAEARRVLTSNRWQGNVRELENTMHRAVLMASGDEIGAEAIISPDG 366 Query: 446 D-------AATVAVGEDAMEGSLDEITSR----FERSVLTQLYRNYPSTRKLAKR-LGVS 493 D A VA A E + R ER ++ + ++ R A LG+S Sbjct: 367 DRLDLAKTAPAVAHATLAAEQVTRALVGRTVADVERDLILETLKHCLGNRTHAANILGIS 426 Query: 494 HTAIANKLREY 504 + NKL EY Sbjct: 427 IRTLRNKLNEY 437 >UniRef50_Q24N84 Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense Y51 RepID=Q24N84_DESHY Length = 650 Score = 223 bits (569), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 133/371 (35%), Positives = 211/371 (56%), Gaps = 26/371 (7%) Query: 157 FLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVS-AFSQIVAVSPKMKH 215 FL I P+ +D+ ++G +V+L+ T + + ++ A V F I+ SP+ Sbjct: 286 FLTSIKPIKSKDK-----ISGYIVLLKETDHIKKAAKSPYAAMVKFTFDTIIGSSPQSMK 340 Query: 216 VVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESEL 275 + A+K A ++ +LI G++GTGKD++A A H + R PY+A+NCA+IP++ + SEL Sbjct: 341 LKSMAKKFAHFNSNILIQGESGTGKDVYAQAIHFEN-RPNGPYIAVNCAAIPQNLIASEL 399 Query: 276 FGHAP--------EGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDH 327 FG+ +GK G E ANGG++ LDEIG+M +QA LLR L D VG Sbjct: 400 FGYEGGAFTGAERQGKPGKIELANGGTLFLDEIGDMPLELQAVLLRVLEDKMIMHVGGSR 459 Query: 328 EVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVAR 387 + VD R+I AT KNL++LV+ FREDLYYR++V L++PPLR+ DI+ L E F+ Sbjct: 460 YIPVDFRLITATNKNLLDLVKNNQFREDLYYRISVFKLSVPPLRERGSDIVQLIEHFIRI 519 Query: 388 FADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDI---LLPD 444 ++ QG+ P L+ +L +Y WPGNVRQL+N I A+ + +RP+++ +L Sbjct: 520 YSSNQGIDEPILSNSAKYLLLQYNWPGNVRQLQNTISYAVCMSNEGIIRPENLPEEILSY 579 Query: 445 YDAATVAVGEDAMEGS-----LDEITSRFE---RSVLTQLYRNYPSTRKLAKRLGVSHTA 496 + + + + E S LD S E ++++ L+ + R AK LG+S + Sbjct: 580 QPPSGLTLAQPEPEPSPNEIILDNTPSMKEIEKKAIMKALHESNNHIRGAAKILGLSKST 639 Query: 497 IANKLREYGLS 507 + K++EY +S Sbjct: 640 LYRKIKEYEIS 650 >UniRef50_A4J599 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J599_DESRM Length = 575 Score = 223 bits (569), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 145/455 (31%), Positives = 229/455 (50%), Gaps = 42/455 (9%) Query: 82 LSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESE 141 ++A++E + E V VD V N + +L+G K + R + Sbjct: 132 INAVVETVDEAVCIVDNNDMVTSWNSRAEELYGIKAQDIIGKPICSFFTNLVVTRVNKEW 191 Query: 142 PQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRST---IRMGRQLQNVAAQ 198 + H + G + L+ TPV L + + G V R +++ ++L ++Q Sbjct: 192 QEIRSLHHQPVPGTHVLINATPVRLGPK-----VIGGVTAERDVTEIVQLNQKLNQASSQ 246 Query: 199 -------------DVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAY 245 D + F+ + ++ ++ A+K A+ SA +L+ G++GTGK+LFA Sbjct: 247 VQRLEKEIDKFSTDRNPFAAVKGHHKRLTELINVARKAALTSAVVLLRGESGTGKELFAK 306 Query: 246 ACHQASPRAGKPYLALNCASIPEDAVESELFGHAP--------EGKKGFFEQANGGSVLL 297 A H+ASPR K + +NCA+IP ESE+FG+ +GK G FE A+GG++ L Sbjct: 307 AIHEASPRIDKKFCVINCAAIPPSLFESEMFGYESGAFTGADKKGKIGVFEMADGGTLFL 366 Query: 298 DEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLY 357 DEI E+ MQ KLLR L DG F R+G + VDVR+I AT ++L +++ G FREDLY Sbjct: 367 DEISELPLDMQVKLLRVLQDGVFFRIGGSTPIKVDVRIIAATNRSLEDMMAHGTFREDLY 426 Query: 358 YRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVR 417 YRLNV++L +PPLR+ +DI L LF+ F+ KL + Y+WPGN+R Sbjct: 427 YRLNVVSLEIPPLRERREDIPELVYLFLQEFSQLYNKQISKLEPGVMATFLAYSWPGNIR 486 Query: 418 QLKNAIYRALTQLDGYELR----PQDILLPD-YDAATVAVGEDAMEGSLDEITSRFERSV 472 QLKN I R + +G + P+ + L D AT +G L +T + ER + Sbjct: 487 QLKNIIERMVILTEGDTVLESAIPESLKLSSRQDQATATIG-------LASVTEQTEREL 539 Query: 473 LTQLYRNYPSTRKLAKR-LGVSHTAIANKLREYGL 506 + + + R A R LG+ + + K+ + G+ Sbjct: 540 IIRTLKQVNGNRSEAARMLGIPRSTLYYKMHQLGI 574 >UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC n=32 Tax=Proteobacteria RepID=ATOC_ECOLI Length = 461 Score = 223 bits (569), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 129/318 (40%), Positives = 185/318 (58%), Gaps = 17/318 (5%) Query: 203 FSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALN 262 + I+ SP M + + K+A+ A +LI+G++GTGK+L A A H S RA P++ +N Sbjct: 142 WGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVN 201 Query: 263 CASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFL 315 CA++PE +ESELFGH A ++G FE+AN G++LLDEIGEM +QAKLLR L Sbjct: 202 CAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRIL 261 Query: 316 NDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQ 375 + F R+G + VD+R+I AT ++L +V++G FREDL+YRLNV+ L LPPLRD + Sbjct: 262 QEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRRE 321 Query: 376 DIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDG--- 432 DI L F+ +F+ E + ++LT ++WPGN+R+L N I RA+ G Sbjct: 322 DISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNSGPII 381 Query: 433 -YELRPQDILLPDYDAA---TVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAK 488 E P I P +A T VGE ++ + + R VL Q N T A Sbjct: 382 FSEDLPPQIRQPVCNAGEVKTAPVGERNLKEEIKRVEKRIIMEVLEQQEGNRTRT---AL 438 Query: 489 RLGVSHTAIANKLREYGL 506 LG+S A+ KL+EYG+ Sbjct: 439 MLGISRRALMYKLQEYGI 456 >UniRef50_A0NV29 LuxO repressor protein n=3 Tax=Rhodobacteraceae RepID=A0NV29_9RHOB Length = 497 Score = 223 bits (569), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 112/250 (44%), Positives = 161/250 (64%), Gaps = 11/250 (4%) Query: 199 DVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPY 258 + S +++V S +M+ + +Q ++A AP+ ITG++GTGK+L A A H S R + Sbjct: 166 ETSGMNRLVGTSAQMRDIHDQIARMAPSQAPVFITGESGTGKELCAAAVHDLSERRSNRF 225 Query: 259 LALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKL 311 + LNCA+IP D +ESE+FG+ A + ++G EQANGG++ LDEIGEM +Q+KL Sbjct: 226 VTLNCAAIPRDLIESEIFGYVRGAFTGATDNREGAAEQANGGTLFLDEIGEMDLLLQSKL 285 Query: 312 LRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLR 371 LRFL GTF+R+G+ H VD R+ICAT +N V+ + G FREDLYYRL+VL ++LPPLR Sbjct: 286 LRFLQTGTFQRLGDTHTRKVDARIICATNRNPVQEISAGRFREDLYYRLHVLPIHLPPLR 345 Query: 372 DCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLD 431 + DI+PL E F+ R++ E+ AD + Y WPGNVRQL+N I + + D Sbjct: 346 ERRDDILPLAETFLERYSAEERRGFRGFDADAEARIISYPWPGNVRQLENTIRQIVVMND 405 Query: 432 G----YELRP 437 G Y++ P Sbjct: 406 GAAVTYDMLP 415 >UniRef50_Q3ACP6 Sigma-54 dependent transcriptional regulator n=4 Tax=Thermoanaerobacteraceae RepID=Q3ACP6_CARHZ Length = 630 Score = 223 bits (568), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 141/462 (30%), Positives = 246/462 (53%), Gaps = 40/462 (8%) Query: 68 RTVPWMPSEREHLA-LSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAA 126 R + SE+E + +++ + + +++VD ++ + N + ++F + + Sbjct: 183 RLAEAIKSEKEKTEQIKTIVDFVHDGIIAVDKDGRISIYNKMAEKIFKKLPSEVIGKKVE 242 Query: 127 QLINGFNFLRWLES-EPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRST 185 +I +++ +P+ + I+G P+ + +E + GAV + Sbjct: 243 TVIPNTRLYEVIKTGKPEIGKIQE--ISGTMIATNRVPIVVGNE-----VVGAVATFQDV 295 Query: 186 I-------RMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGT 238 ++ R+L + F I+ +S KMK VV QA+K A+L + +LI G+TGT Sbjct: 296 AEIQNMEQKIRRRLADKGLIASFKFDDIIFISDKMKDVVNQAKKYALLDSTVLILGETGT 355 Query: 239 GKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQA 290 GK+LFA + H AS R P++A+NCA++PE+ +ESELFG+A GK G FE A Sbjct: 356 GKELFAQSIHNASERKNGPFVAINCAALPENLLESELFGYAEGAFTGARKGGKAGLFELA 415 Query: 291 NGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKG 350 + G++ LDEIGEM +Q+KLLR + + R+G+D + VDVR+ICAT +NL+E++ +G Sbjct: 416 HKGTIFLDEIGEMPMGLQSKLLRVIQEKKVMRIGDDRLIPVDVRIICATNRNLIEMINEG 475 Query: 351 MFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFA-----DEQGVPRPKLAADLNT 405 F+ DL+YR+++L +++P LR+ +DI L F+ +++ QG+ + Sbjct: 476 KFKRDLFYRISILQIHIPSLRERKEDIEVLVPYFIKKYSLICKKHIQGITSRGM-----E 530 Query: 406 VLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDI-LLPDYDAATVAVGEDAM--EGSLD 462 +L ++ +PGNVR+L++ I RA +G + +DI L D D+ V + LD Sbjct: 531 LLKKWDYPGNVRELESIIERACAICEGNIIDVRDIKLYNDQDSMENKVSSQSFLEIKPLD 590 Query: 463 EITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREY 504 EI + + V+ N AK+LG+S T + KL+ + Sbjct: 591 EIEKEYIKKVIKFTDGNLSEA---AKKLGISRTTLWRKLKNF 629 >UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator Nla6 n=8 Tax=Cystobacterineae RepID=Q1D552_MYXXD Length = 484 Score = 223 bits (568), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 129/332 (38%), Positives = 195/332 (58%), Gaps = 19/332 (5%) Query: 182 LRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKD 241 +R + R+L+ + + D ++A S M+ V+E +K+A A + I+G++GTGK+ Sbjct: 125 MREVQTLRRRLKQLGSSD------LIAQSVGMRKVIELVEKVAPSKASVSISGESGTGKE 178 Query: 242 LFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGS 294 + + A H S R KP++A+NCASIP +ESELFGH A + + G FE A+GG+ Sbjct: 179 VVSRAVHNLSLRRDKPFIAINCASIPATLIESELFGHERGAFTGADQRRPGVFEMAHGGT 238 Query: 295 VLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFRE 354 + LDE+GE+ +QAKLLR L +G RR+G E+ VDVRV+CAT ++L + ++ G FRE Sbjct: 239 LFLDELGEIPIELQAKLLRVLEEGKLRRLGGKVEIEVDVRVLCATNRDLKQEIKNGRFRE 298 Query: 355 DLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPG 414 DLY+RLNV ++LPPLR+ D+ L + FV +F + G + + VL Y WPG Sbjct: 299 DLYFRLNVFQIHLPPLRERRDDVPILVQHFVDKFRGDSGKRVSGVHPEAMEVLKNYDWPG 358 Query: 415 NVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEG--SLDEITSRFERSV 472 N+R+L+NA+ RA+ DG EL ++ L PD + + SLD + + + Sbjct: 359 NIRELRNAVERAVILCDG-ELITREHLPPDMAGKSPERHTFRLPFGLSLDAVEREY---I 414 Query: 473 LTQLYRNYPSTRKLAKRLGVSHTAIANKLREY 504 L L RN + + A+ LGVS + NKL Y Sbjct: 415 LGSLQRNGNNKARTAEVLGVSEKTLYNKLNRY 446 >UniRef50_UPI00016C5695 DNA-binding protein Fis / transcriptional regulator, Fis family n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5695 Length = 635 Score = 223 bits (567), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 143/345 (41%), Positives = 192/345 (55%), Gaps = 19/345 (5%) Query: 175 LTGAVVMLRSTIRMGRQLQNVAAQD----VSAFSQIVAVSPKMKHVVEQAQKLAMLSAPL 230 +T V+M R R+ Q QNV Q+ F +IV SP + V+++ K+A + + Sbjct: 293 VTERVLMEREQARL--QQQNVYLQEELKAAHNFDEIVGQSPALVSVLQRVSKVAGTDSTV 350 Query: 231 LITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH-------APEGK 283 LITG+TGTGK+L A A H ASPR KP + LNCA++P VESELFGH A K Sbjct: 351 LITGETGTGKELVARAVHSASPRKAKPLIKLNCAALPTHLVESELFGHEKGAFTGAVARK 410 Query: 284 KGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNL 343 G FE A+GG++ LDE+GE+S QAKLLR L + F RVG V VDVRVI AT ++L Sbjct: 411 PGRFELADGGTLFLDEVGELSLEAQAKLLRVLQEREFERVGGTAPVKVDVRVIAATNRDL 470 Query: 344 VELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADL 403 +LV++G FR DL YRLNV + LP LR+ P DI L FV +FA G +++ D Sbjct: 471 AQLVKEGAFRADLLYRLNVFPVRLPALRERPGDIPLLVRFFVTKFAGRLGKRIERVSGDT 530 Query: 404 NTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAAT--VAVGEDAMEGSL 461 L Y WPGN+R+L+N I RA DG EL ++ PD T A A SL Sbjct: 531 LDALVGYDWPGNIRELENVIERAAILSDGPEL----VIDPDVLPVTRGGAAPAGAGGQSL 586 Query: 462 DEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 + + RSVL Q A LG+ + +++++ G+ Sbjct: 587 VAVEADHIRSVLAQTGWVIEGPNGAATVLGLHPNTLRSRMKKLGI 631 >UniRef50_B2A661 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A661_NATTJ Length = 577 Score = 222 bits (566), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 124/317 (39%), Positives = 191/317 (60%), Gaps = 13/317 (4%) Query: 205 QIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCA 264 +IVA S K ++ QA ++A + +LITG+TG GK++ A HQ S R+ +P++ +NC Sbjct: 264 EIVAKSKVKKRLLAQAARVAAFDSTVLITGETGVGKEIVAKYIHQNSNRSEQPFIKINCG 323 Query: 265 SIPEDAVESELFGHAP--------EGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLN 316 +IPE+ +ESELFGH P GK G FE ANGG++LLDEIGE+S +Q KLLR L Sbjct: 324 AIPENLLESELFGHEPGSFTGASKNGKPGKFEIANGGTLLLDEIGELSKDLQVKLLRALQ 383 Query: 317 DGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQD 376 D R+G +DV++I T ++L E+V +G FREDLYYRL+V+ L +PPLR+ P D Sbjct: 384 DQEITRIGGVKPRQLDVKIIACTNRDLEEMVSQGEFREDLYYRLSVVPLYIPPLRERPDD 443 Query: 377 IMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELR 436 I L ++ ++ ++ GV + ++ L L Y WPGNVR+L+N I R + + + Sbjct: 444 IPFLIRHYIRKYNEKYGVNKGLSSSALEE-LVSYNWPGNVRELENMIERLVIMVPENLIE 502 Query: 437 PQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTA 496 D L + V + E+ SL + S+ E+ +L + +TR+ A+ LGV+ + Sbjct: 503 TSD-LPQQIKESNVKILENL---SLPDAVSKLEKRMLQKAMEQSNNTREAAQILGVAQST 558 Query: 497 IANKLREYGLSQKKNEE 513 + KL +YGL+ K +++ Sbjct: 559 VVRKLDKYGLNYKHDDQ 575 >UniRef50_B8FKE8 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FKE8_DESAA Length = 460 Score = 222 bits (566), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 120/313 (38%), Positives = 183/313 (58%), Gaps = 12/313 (3%) Query: 202 AFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLAL 261 + I+ SP + A++ A +P+LI G++GTGK+LFA+A H S R + + Sbjct: 151 SLDSILGDSPDIIQAKRLAEQAAGADSPVLIMGESGTGKELFAHAIHGLSQRGSGALVKV 210 Query: 262 NCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLR 313 NCA+IP + +E+ELFG+ +GK G FE A+GG++ LDEIG+M MQ K+LR Sbjct: 211 NCAAIPGELLEAELFGYEEGAFTGARKKGKAGKFELAHGGTIFLDEIGDMPLPMQIKILR 270 Query: 314 FLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDC 373 L + RVG + VD R+ICAT ++L +L+++G+FR+DLYYR+NV+TL LPPLRDC Sbjct: 271 VLQEREVERVGSNRPKKVDFRLICATNRDLPKLMRQGLFRQDLYYRINVMTLKLPPLRDC 330 Query: 374 PQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGY 433 DI PL + F +R + P PK+ + +L +Y+WPGNVR+L+N RAL Sbjct: 331 RDDIFPLFQHF-SRILGREKTP-PKILPGVKEILEKYSWPGNVRELRNVTERALIVCRDN 388 Query: 434 ELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVS 493 + P D LPD V + SL + + E+ ++ Q S + A+ LG+ Sbjct: 389 TVSPAD--LPDLSQQEVLPQVIEEKASLKALMDQAEKKIIEQALVQASSRAEAARNLGIH 446 Query: 494 HTAIANKLREYGL 506 T + K++++G+ Sbjct: 447 RTGLYQKMKKHGI 459 >UniRef50_Q00934 Type 4 fimbriae expression regulatory protein pilR n=65 Tax=Proteobacteria RepID=PILR_PSEAE Length = 445 Score = 222 bits (566), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 123/337 (36%), Positives = 197/337 (58%), Gaps = 15/337 (4%) Query: 182 LRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKD 241 LR + +L+N A++ ++++ SP M+ + Q KLA AP+ I+G++G+GK+ Sbjct: 111 LRELVATALRLRNPEAEEAPVDNRLLGESPPMRALRNQIGKLARSQAPVYISGESGSGKE 170 Query: 242 LFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGS 294 L A H+ PR +P++ +NC +IP + +ESE FGH A E K+G F+ A+GG+ Sbjct: 171 LVARLIHEQGPRIERPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAASGGT 230 Query: 295 VLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFRE 354 + LDE+ ++ MQ KLLR + + R VG EV VDVR++CAT K+L V G FR+ Sbjct: 231 LFLDEVADLPMAMQVKLLRAIQEKAVRAVGGQQEVAVDVRILCATHKDLAAEVGAGRFRQ 290 Query: 355 DLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPG 414 DLYYRLNV+ L +PPLR+ +DI L E + R A + G+P +L D L Y +PG Sbjct: 291 DLYYRLNVIELRVPPLRERREDIPLLAERILKRLAGDTGLPAARLTGDAQEKLKNYRFPG 350 Query: 415 NVRQLKNAIYRALTQLDGYELRPQDILLPDYDAAT----VAVGE-DAMEGSLDEITSRFE 469 NVR+L+N + RA T + +++P D+ L D A+ ++ E D +E L++I + Sbjct: 351 NVRELENMLERAYTLCEDDQIQPHDLRLADAPGASQEGAASLSEIDNLEDYLEDIERKLI 410 Query: 470 RSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 L + N + A+RLG++ ++ +L++ G+ Sbjct: 411 MQALEETRWNRTAA---AQRLGLTFRSMRYRLKKLGI 444 >UniRef50_A5I3D4 Putative sigma-54 dependent transcriptional regulator n=10 Tax=Clostridium RepID=A5I3D4_CLOBH Length = 591 Score = 222 bits (566), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 135/488 (27%), Positives = 258/488 (52%), Gaps = 38/488 (7%) Query: 41 LNFAELEFESFSSLMAEIRR--IAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDM 98 LN EF+S + + + + + T+ + + E + ++++L ++ VD Sbjct: 122 LNMISKEFDSMITFLNRLSTLLVGNIIYYDTIKKLQIQTEET--NHIIDSLSHGIMCVDN 179 Query: 99 KSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQN-- 156 + N +L K L N I+ FN ++ L E + + + I+G+N Sbjct: 180 NGILKYINHKGKKLLDIKEKSLVNTNIKDTISNFN-IKLLSKEYK---GKRISIHGKNES 235 Query: 157 FLMEITPVYLQDENDQHVL--TGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMK 214 FL++ +P+ + E +++ + +++ ++ A+ + F I+ S +K Sbjct: 236 FLIKSSPIIFKGERVSNIIEFNKKIDEVQAAYKL------FASSKIIKFEDIMGSSNNIK 289 Query: 215 HVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESE 274 +V A+ +A + +L+ G++GTGK+LFA A H S R P++A+NCASIP++ +ESE Sbjct: 290 NVKLIAKNIAKTDSTVLLRGESGTGKELFARAIHFESQRCDAPFIAVNCASIPDNLLESE 349 Query: 275 LFGH--------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGED 326 FG+ EG+ G FE ANGG++ LDEIG++ +Q K+LR L + +F ++G Sbjct: 350 FFGYEGGAFSGAKREGQMGKFELANGGTIFLDEIGDLPLHLQPKILRVLQEQSFTKIGGK 409 Query: 327 HEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVA 386 E+ VDVR+I AT ++L +V+ G FR+DLYYRLNV+ + LP L+D +DI+ L+E + Sbjct: 410 EEICVDVRIIAATNRDLEAMVKHGQFRQDLYYRLNVIPIYLPSLKDRGEDIILLSEYLMD 469 Query: 387 RFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDY- 445 +F + + +L+ ++ +Y+WPGN+R+L+N I + ++I+ ++ Sbjct: 470 KFCERSNLKIKQLSKEVKDSFKKYSWPGNIRELENVIEYIVNT------TKENIIYNEHL 523 Query: 446 -DAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNY----PSTRKLAKRLGVSHTAIANK 500 + ++ ++ SL + ++E+++L + Y ++AK L ++ + + K Sbjct: 524 PKSFKISKEDEKSNKSLQDRLYKYEKNLLISMMEEYGEDGKGKERIAKELDINLSTLYRK 583 Query: 501 LREYGLSQ 508 L +Y L + Sbjct: 584 LNKYNLQK 591 >UniRef50_B0TGM7 Sigma-54 dependent response regulator n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TGM7_HELMI Length = 516 Score = 222 bits (566), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 126/312 (40%), Positives = 181/312 (58%), Gaps = 9/312 (2%) Query: 202 AFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLAL 261 A + ++A P V+EQA+ +A +L+ G++G GK++FA H+ S R+ P++A+ Sbjct: 200 AVNDLIACDPATCAVLEQARLVAETDTTVLLLGESGVGKEVFAGVIHRLSKRSAGPFVAV 259 Query: 262 NCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRF 314 NCA++P +ESELFGH A K G FEQA GG++ LDEIGE+ +QAKLLR Sbjct: 260 NCAALPTSLIESELFGHERGAFTGAHTMKIGRFEQATGGTLFLDEIGELEATVQAKLLRV 319 Query: 315 LNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCP 374 L + F R+G + D R+I AT ++L VQ+ FR DLYYRL V + +PPL P Sbjct: 320 LQEKRFERIGGTRSIAADCRIIAATNRDLKAAVQERQFRSDLYYRLAVFPIEIPPLCRRP 379 Query: 375 QDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYE 434 DI+PL F+ RFA + G P+L L + WPGNVR+L NAI RAL G Sbjct: 380 ADILPLATHFLTRFAGKNGRDLPQLTEAALAALQEHPWPGNVRELANAIERALILCAGGP 439 Query: 435 LRPQDILLPDYDAATVAVGEDAMEGSLDE-ITSRFER-SVLTQLYRNYPSTRKLAKRLGV 492 + P+ + L + A G A+ S D+ I + ER ++L L N + +K A++LG+ Sbjct: 440 IEPRHLGLAHREKARADQGVKALADSTDDGILKQQERDTILRVLAANGNNRQKTAQQLGI 499 Query: 493 SHTAIANKLREY 504 S + NKL+EY Sbjct: 500 SVRTLRNKLKEY 511 >UniRef50_P12626 Nitrogen fixation protein anfA n=11 Tax=Bacteria RepID=ANFA_AZOVI Length = 533 Score = 222 bits (565), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 128/319 (40%), Positives = 182/319 (57%), Gaps = 21/319 (6%) Query: 204 SQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNC 263 S I+ S M+ V E K+A A +LI G++G GK+L A A H SP A + NC Sbjct: 217 SNIIGNSKPMQEVYELIHKVASTKATVLILGESGVGKELVANAIHYNSPNAEAALVTSNC 276 Query: 264 ASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLN 316 A +PE+ ESELFGH A KG FEQA+GG++ LDE+GE+SP +QAKL+R L Sbjct: 277 APLPENLAESELFGHEKGSFTGALTMHKGCFEQADGGTIFLDEVGELSPTVQAKLVRVLQ 336 Query: 317 DGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQD 376 + TF RVG V VDVR+I AT +NLVE+V++G FREDLYYRLNV + +PPLR+ D Sbjct: 337 NRTFERVGGSKPVKVDVRIIAATNRNLVEMVEQGTFREDLYYRLNVFPITVPPLRERGSD 396 Query: 377 IMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLD----- 431 ++ L + FV+ F+ E G +++ +L Y WPGNVR+L+N + RA+ D Sbjct: 397 VIALADHFVSAFSRENGKNVKRISTPALNMLMSYHWPGNVRELENVMERAVILSDDDVIH 456 Query: 432 GYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPS-TRKLAKRL 490 Y L P L ++ T A +L+E E ++ + +N + AK L Sbjct: 457 SYNLPPS--LQTSKESGT------AFGLTLEEKIKAVECEMIVEALKNSSGHIGEAAKEL 508 Query: 491 GVSHTAIANKLREYGLSQK 509 G++ + ++ YG+S K Sbjct: 509 GLARRMLGVRMERYGISYK 527 >UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B8FJT8_DESAA Length = 464 Score = 222 bits (565), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 120/313 (38%), Positives = 183/313 (58%), Gaps = 14/313 (4%) Query: 203 FSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALN 262 F V SP+++ V E +K+A + +LITG++GTGK+L A A H SPR P + +N Sbjct: 145 FENFVGDSPQIQRVFELIEKVADTDSTVLITGESGTGKELIARAIHYNSPRRDDPMVIIN 204 Query: 263 CASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFL 315 C +IPE+ +ESELFGH A + + G FE ANGG++ LDEIG+MSP +Q KLLR + Sbjct: 205 CGAIPEELLESELFGHEKGAFTGAHKTRIGRFEVANGGTIFLDEIGDMSPNLQVKLLRVI 264 Query: 316 NDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQ 375 + F R+G +HVD+R++ AT K+L+E V+K FREDLYYRLNV+ + +PPLRD Sbjct: 265 QEQAFERIGSTRTMHVDIRILAATNKDLMEAVEKKEFREDLYYRLNVIPIEVPPLRDRKS 324 Query: 376 DIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYEL 435 DI L + F+ + A E+ P +++ L + WPGNVR+L+N + R L G + Sbjct: 325 DIPLLIDFFINKLAAEKERPVKRISQAAMNALMGHHWPGNVRELENVVERVLILSSGDTI 384 Query: 436 RPQDI--LLPDYDAATVAVGEDAMEGSL--DEITSRFERSVLTQLYR--NYPSTRKLAKR 489 +D+ + D+ G G + D +E++++ Q N+ T+ AK Sbjct: 385 DKEDLPATILGLDSKEPEAGLKLPSGGIRFDHAVEEYEKNLIVQALEEANWVKTQA-AKL 443 Query: 490 LGVSHTAIANKLR 502 L ++ T + K++ Sbjct: 444 LHINRTTLVEKMK 456 >UniRef50_Q5WKW0 Transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WKW0_BACSK Length = 451 Score = 222 bits (565), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 138/385 (35%), Positives = 211/385 (54%), Gaps = 35/385 (9%) Query: 152 INGQNFLMEITPVYLQDENDQHVLTGAVVM---------LRSTIRMGRQLQNVAAQDVSA 202 +NG+ +L+++ P++ D+ + GAV + L TI +Q Q V A Sbjct: 72 VNGREYLVDMAPIFDGDQ-----VVGAVSICKGKQEVLDLTKTIEQQKQQIQWLQQKVEA 126 Query: 203 -------FSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAG 255 F I+ + +K V A+K A P+LITG++GTGK+LFA A H+ A Sbjct: 127 SFQAAHHFESIIGYNQGLKEVTAIARKAATAPFPVLITGESGTGKELFAQAIHRGGKNAS 186 Query: 256 KPYLALNCASIPEDAVESELFGH--------APEGKKGFFEQANGGSVLLDEIGEMSPRM 307 +P++ +NCA+IP D +ESELFG+ GK G FE A+ G++ LDEIGE+ + Sbjct: 187 QPFVPINCAAIPTDLLESELFGYETGAFTGAQKNGKLGLFELADNGTLFLDEIGELPLSL 246 Query: 308 QAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNL 367 Q+KLLR L +GT RR+G E V R+I AT +NL +LV KG+FREDLYYRL V L++ Sbjct: 247 QSKLLRVLQEGTIRRLGALKEKRVCTRIIAATNQNLADLVSKGLFREDLYYRLCVFQLHI 306 Query: 368 PPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRAL 427 PPLR+ +DI L + +A +D + V + ++ + L Y WPGNVR+LKNA+ AL Sbjct: 307 PPLRERKEDIPLLAKTLLASQSDAKAVGQVNISDEALERLKHYHWPGNVRELKNALQFAL 366 Query: 428 TQLDGYELRPQDI---LLPDYDAATVAVG---EDAMEGSLDEITSRFERSVLTQLYRNYP 481 +D L P + L D + + +++ L+E + +VL + Sbjct: 367 CMMDEPVLHPSHLPPHLATDQWQRSTPMSFTPPTSLKAGLEEAERQLITNVLANCDNHLE 426 Query: 482 STRKLAKRLGVSHTAIANKLREYGL 506 ++ AKRL +S + NK++++ L Sbjct: 427 GKKQAAKRLNISLATLYNKMKKHRL 451 >UniRef50_Q7M8U4 TRANSCRIPTIONAL REGULATOR (NIFA FAMILY) n=1 Tax=Wolinella succinogenes RepID=Q7M8U4_WOLSU Length = 512 Score = 221 bits (563), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 127/314 (40%), Positives = 187/314 (59%), Gaps = 23/314 (7%) Query: 204 SQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNC 263 S+I+ SP +K V E K+A SA +LI G+TGTGK+L A A H SPR KPY+ LNC Sbjct: 200 SEIIGYSPPIKRVSEIIAKIAPSSATVLIRGETGTGKELIAKAIHNYSPRKEKPYIKLNC 259 Query: 264 ASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLN 316 A+IPE+ +ESELFGH A E +KG FE A+GG++ LDE+G++S +QAK+LR L Sbjct: 260 AAIPENLLESELFGHEKGAFTDARETRKGRFELADGGTLFLDEVGDLSLPLQAKILRILQ 319 Query: 317 DGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQD 376 + F RVG + VDVR++ AT ++L E+V+ G FREDL+YRLNV+ + PPLRD D Sbjct: 320 EQEFERVGGSKTIKVDVRIVAATNRDLEEMVRMGDFREDLFYRLNVIPIFSPPLRDRGDD 379 Query: 377 IMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELR 436 ++ L+ F+ RF L +L Y WPGN+R+L+N+I R L L E Sbjct: 380 VILLSRYFLERFCKRHA-KELHLTPKAEELLKHYDWPGNIRELENSIER-LVLLAPSESI 437 Query: 437 PQDILLPDYDAATVAVGEDAMEGSLDEITSR-----FERSVLTQLYRNYPSTR-KLAKRL 490 ++++L +V + G E+ +R ERS + + + + + AK+L Sbjct: 438 DEEVVL--------SVLPGRVHGYTKEVKTRADLEELERSAIIKALKECHGIKLQAAKKL 489 Query: 491 GVSHTAIANKLREY 504 G+++ I K+++Y Sbjct: 490 GITNRQIGYKIQKY 503 >UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JZC1_DESAC Length = 455 Score = 221 bits (562), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 123/314 (39%), Positives = 185/314 (58%), Gaps = 13/314 (4%) Query: 206 IVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCAS 265 +V SP M+ + Q ++A +LITG++GTGK+L A A H+ SPR+ K +++NCA+ Sbjct: 141 LVGNSPAMESLRNQIAQVAPAKTSILITGESGTGKELVAQALHRLSPRSNKALVSINCAA 200 Query: 266 IPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDG 318 E+ +ESELFGH A E KKG E ++GG++ LDEIGE +Q KLLR L + Sbjct: 201 FAENLLESELFGHERGAFTGALERKKGLMEVSDGGTLFLDEIGEFPLNLQPKLLRVLQEK 260 Query: 319 TFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIM 378 TFRRVG E+ D+R+I AT +NL +++ +G FREDLYYRLNV++L+LPPLR +DI Sbjct: 261 TFRRVGGTAEISSDIRIIAATHRNLEQMITEGTFREDLYYRLNVVSLHLPPLRHRREDIP 320 Query: 379 PLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELR-- 436 L++LF+ R + + G P P+L++ L Y WPGNVR+L+N + R L DG L Sbjct: 321 LLSQLFLERLSRDMGCPLPQLSSQAQHDLYHYEWPGNVRELQNILERGLLFCDGPTLEQN 380 Query: 437 --PQDI--LLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGV 492 PQ P ++ + + + + + ++ + L K A+ LG+ Sbjct: 381 HLPQQFHSQAPHHNGCSETAAMPLQQPLPEHLETIEQKLIQAALIDARGVQAKAAELLGI 440 Query: 493 SHTAIANKLREYGL 506 S + + KL++Y L Sbjct: 441 SRSNLQYKLKKYHL 454 >UniRef50_A8ZYR3 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=A8ZYR3_DESOH Length = 485 Score = 221 bits (562), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 122/305 (40%), Positives = 181/305 (59%), Gaps = 22/305 (7%) Query: 181 MLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGK 240 M+R+ + M NVA D + I+ SP M+ V + ++A A +LI G++GTGK Sbjct: 122 MMRARVEM-----NVAP-DSARPGAIIGSSPPMQEVYKAIGRVAQTDATVLIRGESGTGK 175 Query: 241 DLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGG 293 +L A A +Q S RAGKP+L +NC ++PE +ESELFG+ A + G EQANGG Sbjct: 176 ELVARAIYQHSKRAGKPFLVINCVALPETLLESELFGYEKGAFTGAASRRIGKIEQANGG 235 Query: 294 SVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFR 353 +V LDEIG+M +QAK+LR L + + +G + + VDVR++ AT +NL + ++ +FR Sbjct: 236 TVFLDEIGDMPLSIQAKILRLLQERSLEPLGGNASIDVDVRILAATNRNLEKAIENEVFR 295 Query: 354 EDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWP 413 EDLYYRL V+T+NLPPLRD D+ L + F+ F+ E + P L + ++ + WP Sbjct: 296 EDLYYRLKVVTVNLPPLRDRVNDVNLLADYFMTLFSKEMKMDNPGLTDEARKMIRHHPWP 355 Query: 414 GNVRQLKNAIYRALTQLDGYELRPQD----ILLPDYDAATVAVGEDAMEGSLDEITSRFE 469 GNVR+L NA+ ++L GY +RP+D I PD +V G D +D + + Sbjct: 356 GNVRELANALKKSLIFSRGYPVRPEDISQVIAGPDQAGPSVTDGSD-----MDRVVGEWA 410 Query: 470 RSVLT 474 R +LT Sbjct: 411 REMLT 415 >UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulator n=3 Tax=Myxococcus RepID=Q1D4K8_MYXXD Length = 471 Score = 221 bits (562), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 139/364 (38%), Positives = 207/364 (56%), Gaps = 29/364 (7%) Query: 156 NFLMEITPVYLQDENDQHVLT-GAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMK 214 NFL++ P+ + DQ ++T G V+ RS + L++ V F I+ SP+++ Sbjct: 100 NFLLK--PL----DADQVLVTLGKVLEKRSLRQEAEALRDQVRSRVRRFHDIIGESPQLQ 153 Query: 215 HVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESE 274 + + ++ A A +LI G++GTGK+L A A HQ SPR KP++ ++CA++ E+ +ESE Sbjct: 154 GIYDVIRRAAGTRATVLILGESGTGKELIAQALHQESPRKDKPFIRVHCAALSENLLESE 213 Query: 275 LFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDH 327 LFGH A K+G FE A+GG++ LDEIGE+SP +Q KLLR L F RVG Sbjct: 214 LFGHEKGSFTGALARKEGRFELADGGTLFLDEIGEISPAVQVKLLRVLQQREFERVGGTQ 273 Query: 328 EVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVAR 387 + VDVR++ AT ++LV V+ G FREDLYYRLNV+++ LPPLRD D+ L F+ + Sbjct: 274 TLKVDVRIVAATHRDLVAEVKAGRFREDLYYRLNVVSVTLPPLRDRKSDVPALVNHFLEK 333 Query: 388 FADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLP---- 443 ++D G LA L + WPGN+R+L+NAI RA+ G EL D LP Sbjct: 334 YSDSYGKQVRGLAPGTLQALLSHDWPGNIRELENAIERAVVLAQGQELSTDD--LPPVLR 391 Query: 444 ---DYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANK 500 + +T A+ A +++ ++L L ST + A+ LG+S I + Sbjct: 392 GPRPHGTSTGALIPGATLAAIE------REAILRTLEMVQGSTSRAAEVLGISVRKIQYR 445 Query: 501 LREY 504 L+EY Sbjct: 446 LKEY 449 >UniRef50_A1HPH1 Putative PAS/PAC sensor protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HPH1_9FIRM Length = 478 Score = 221 bits (562), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 127/313 (40%), Positives = 186/313 (59%), Gaps = 13/313 (4%) Query: 206 IVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCAS 265 I+ S + VVE A K+A + + +LITG++GTGK+LFA H+ +P++ +NC + Sbjct: 168 IIFRSRAIAAVVELATKVADVDSTVLITGESGTGKELFAKLIHRHGRGDNRPFIKINCGA 227 Query: 266 IPEDAVESELFGH--------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLND 317 IPE +ESELFG+ EGK G FE A+GG++ LDEIGEM P +Q KLLR + + Sbjct: 228 IPETLLESELFGYDGGAFTGAKREGKPGLFELADGGTLFLDEIGEMPPVLQVKLLRVIQE 287 Query: 318 GTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDI 377 RVG + V+VR+I AT ++L +VQ+G FREDLYYRL V+ L++PPLR+ +DI Sbjct: 288 KAVIRVGGVKQKSVNVRIIAATNRDLAHMVQQGTFREDLYYRLMVVPLHIPPLRERKEDI 347 Query: 378 MPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRP 437 L + F+ +F + G + L D+ LT Y+WPGNVRQL+N I R + G E+ Sbjct: 348 PLLVKHFLDKFNKKFGFNKVIL-PDVIDRLTEYSWPGNVRQLENIIERLVVTTPGNEITA 406 Query: 438 QDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAI 497 +LP A + + + + L E + E+ +LT+ +R Y + K+A LG+ T Sbjct: 407 D--MLPQQVNARIPLPKTGTK--LKEAVAATEKYLLTETFRQYGNWNKVADVLGIDRTTA 462 Query: 498 ANKLREYGLSQKK 510 K +YGL KK Sbjct: 463 CRKAVKYGLISKK 475 >UniRef50_UPI00016C44AF cetoacetate metabolism regulatory protein atoC n=5 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C44AF Length = 490 Score = 221 bits (562), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 139/341 (40%), Positives = 191/341 (56%), Gaps = 34/341 (9%) Query: 198 QDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKP 257 +D + QIV P M V + ++A P+LI G++GTGK+L A A + SPR+ KP Sbjct: 136 EDSADTEQIVGQCPAMLDVYKAIGRIAPQDVPVLILGESGTGKELVARALYLHSPRSDKP 195 Query: 258 YLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAK 310 ++A+NCA+IP+ +ESELFGH A + G FEQA GG+V LDEIG+M P QAK Sbjct: 196 FVAINCAAIPDALLESELFGHEKGAFTGADRRRVGKFEQAQGGTVFLDEIGDMPPAAQAK 255 Query: 311 LLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPL 370 +LR L D F RVG + V DVRVI AT ++L LV+ FREDL YRLN T+ LPPL Sbjct: 256 MLRLLQDQRFERVGGNESVQTDVRVIAATNRDLSALVRDSKFREDLLYRLNSFTVTLPPL 315 Query: 371 RDCPQDIMPLTELFVARF-----ADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYR 425 RD DI PL FV + +GV LA VL + WPGNVR+L+NA+ Sbjct: 316 RDRTGDIEPLVSHFVTAANRKLKKNVRGVDAAALA-----VLESHRWPGNVRELQNAMRY 370 Query: 426 ALTQLDGYELRPQDILLPDYDAATVAVGEDAME-----------GSLD---EITSRFERS 471 A+ Q G + P LP A DA+E G+ D ++T +R+ Sbjct: 371 AVVQAVGEVITPD--CLPASLRGAAAPPGDALELTALITSLLRVGATDIYRQVTHTVDRA 428 Query: 472 VLTQLYRN-YPSTRKLAKRLGVSHTAIANKLREYGLSQKKN 511 +LT + + + + ++ A RLG+S T + KL+ GL +K+ Sbjct: 429 LLTAVLEHVHGNQKQAADRLGISRTTLRAKLQTLGLGVEKH 469 >UniRef50_Q3A203 Two component signal transduction response regulator n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A203_PELCD Length = 575 Score = 220 bits (561), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 146/447 (32%), Positives = 241/447 (53%), Gaps = 40/447 (8%) Query: 82 LSALLEALPEPVLSVDMKSKVDMANPASCQLFG-------QKLDRLRNHTAAQLINGFNF 134 L+A+ E++ + +LSVD V N A+ +L G +K+D L A + Sbjct: 140 LAAIFESVKDGLLSVDASGCVTDFNQAASRLCGWSKDDRGEKIDALSMPCAGTCRDLLT- 198 Query: 135 LRWLES----EPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGR 190 R LE E + EH+ GQ + +P+ +N + + GAV+++R R+ Sbjct: 199 -RTLEEGKSMELKRMECEHLERAGQVVSLSTSPL----QNKEGDVFGAVMVVRDETRLDD 253 Query: 191 QLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQA 250 +++ + +F +++A S KM+ V + LA + + +LI G++GTGK+L A A H + Sbjct: 254 LERSLNKR--QSFHRMIATSSKMQQVFGLIETLAQVPSTVLILGESGTGKELVAEALHLS 311 Query: 251 SPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEM 303 PR +P + +NCA++ + +ESELFGH A + G F++A+GG++ LDEIG++ Sbjct: 312 GPRKNRPLVKVNCAALSDTLLESELFGHVKGSFTGAVKDHVGRFQKADGGTIFLDEIGDI 371 Query: 304 SPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVL 363 SPRMQ +LLR L + R+G+ V VDVR++ AT ++L E V+ G FR+DLYYRL V+ Sbjct: 372 SPRMQLRLLRVLQEKEVERIGDSTPVKVDVRIVAATNQDLEEKVRSGEFRQDLYYRLKVI 431 Query: 364 TLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAI 423 TL LPPLR+ +DI P+ + F+ R+ + G + ++ + Y WPGNVRQL++AI Sbjct: 432 TLALPPLRERKEDIPPMVDHFIQRYNEVLGRNLQGVDQEVMRAMQAYDWPGNVRQLEHAI 491 Query: 424 YRALTQ----LDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRN 479 L L P++IL GE A+ + + ++ +L L + Sbjct: 492 EHILIHCTEPLASLAHVPEEILQ----------GEQAVGKYCADSEEQEQQQILAALDKT 541 Query: 480 YPSTRKLAKRLGVSHTAIANKLREYGL 506 + K A+ LG+ + K+ ++GL Sbjct: 542 DWNKAKAARLLGIDRKTLYRKIEKFGL 568 >UniRef50_C3ICC4 Sigma54 specific transcriptional regulator, Fis n=4 Tax=Bacillus thuringiensis RepID=C3ICC4_BACTU Length = 693 Score = 220 bits (561), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 121/320 (37%), Positives = 182/320 (56%), Gaps = 21/320 (6%) Query: 202 AFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLAL 261 +F +I+ S + + A K+A + +LITG++GTGK+L A H+ S R KP++ + Sbjct: 369 SFLEIIGCSDVLMETLFIANKVAKSDSTVLITGESGTGKELIAKGIHKVSLRKDKPFIRV 428 Query: 262 NCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRF 314 NCA+IP + +ESELFGH A ++G FEQAN G++ LDEIG++ +Q KLLR Sbjct: 429 NCAAIPPNLIESELFGHEKGAFTGALHMRRGKFEQANNGTIFLDEIGDLKLDLQVKLLRV 488 Query: 315 LNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCP 374 L + RVG D + ++VRV+ AT NL ++V FREDLYYRLNV+ +++PPLR+ Sbjct: 489 LQEKEIVRVGGDKTIKLNVRVLAATNGNLQKMVHDREFREDLYYRLNVIPIHIPPLRERK 548 Query: 375 QDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYE 434 DI L E F F D L +Y WPGN+R+L+N I RA+ Sbjct: 549 ADIQSLIEYFRGHFNTSLNKEIHSYTDDFLHALMKYNWPGNIRELQNVIERAMN------ 602 Query: 435 LRPQDIL----LPD---YDAATVAVGEDAMEGSLDEIT-SRFERSVLTQLYRNYPSTRKL 486 L D+L LPD ++ ++ + +E + +T S +E+ +L + + YPS Sbjct: 603 LSENDVLEIGDLPDNINMNSQQNSIINNQIENTETVLTMSEYEKKILKHVIQFYPSFNAA 662 Query: 487 AKRLGVSHTAIANKLREYGL 506 K LG++H +A K+R+Y L Sbjct: 663 GKALGLTHKTVAAKVRKYNL 682 >UniRef50_Q1IRB0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IRB0_ACIBL Length = 458 Score = 220 bits (561), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 127/324 (39%), Positives = 190/324 (58%), Gaps = 23/324 (7%) Query: 202 AFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLAL 261 F +I+ P M++ + Q++A + +L+ G++GTGK+LFA A HQ S R+ +P++AL Sbjct: 138 GFPRIIGEHPTMQNSAREMQRIAGSDSTVLLLGESGTGKELFARAIHQLSIRSTQPFVAL 197 Query: 262 NCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRF 314 NCA++PE +E+ELFGH A K G FE AN G++ LDEIGE+ +Q+KLLR Sbjct: 198 NCAAMPEGLIENELFGHEKGAFTGANTRKSGKFEMANRGTIFLDEIGELPLNLQSKLLRV 257 Query: 315 LNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCP 374 L + R+G + +DVRV+ AT + L + V+ G FR DLYYRL V + +PPLR+ Sbjct: 258 LEEHVVERLGSTMPLQLDVRVVAATNRELEQAVEAGAFRRDLYYRLAVFPIRIPPLRERG 317 Query: 375 QDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYE 434 +D++ + E F+A F E PR LA D L + WPGNVR+L+N I RA L E Sbjct: 318 EDVILIAEHFLAHFRQELKKPRLSLAPDALAALRAHLWPGNVRELQNTIERAAI-LHDTE 376 Query: 435 LRPQDILLPD--YDAATVAVGEDA--MEGSLDEITSRFERSV--------LTQLYRNYPS 482 + D+ L AA V++GE + M GSL E++++ R++ L + N + Sbjct: 377 VTAADLGLSANLRSAAAVSLGEHSIDMGGSLPEVSAQASRTIEKAKIEATLRECKWNKSA 436 Query: 483 TRKLAKRLGVSHTAIANKLREYGL 506 A+RLG+S+ + K+ YGL Sbjct: 437 A---AERLGISYKTLLTKIHGYGL 457 >UniRef50_Q0AWW3 Sigma-L-dependent transcriptional regulator n=4 Tax=Clostridiales RepID=Q0AWW3_SYNWW Length = 696 Score = 220 bits (561), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 120/317 (37%), Positives = 191/317 (60%), Gaps = 12/317 (3%) Query: 201 SAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLA 260 S +I++ S +M+ ++E +LA + + +LI G++GTGK+L A H S RA KP++ Sbjct: 378 SGTDKIISKSTEMRKLLETVVRLAEVDSTILINGESGTGKELIAETIHNHSARAKKPFIK 437 Query: 261 LNCASIPEDAVESELFGH--------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLL 312 +NC +IPE+ +ESELFG+ EGK G+FE A+ G++ LDEIG++ +Q KLL Sbjct: 438 VNCGAIPENLMESELFGYEYGAFTGAKKEGKAGYFELAHEGTLFLDEIGDLPFNLQVKLL 497 Query: 313 RFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRD 372 R L RVG + VD R++ AT +NL+E+VQK FREDLYYRL+V+ + +PPLRD Sbjct: 498 RVLQSKEINRVGGRQALKVDTRILAATNRNLLEMVQKKQFREDLYYRLHVIPVIIPPLRD 557 Query: 373 CPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDG 432 +DI L F+A F + + + +++ D+ +L Y WPGNVR+L+N I R L + Sbjct: 558 RKEDIPSLIVHFIALFNRKYKLNK-RISPDVVDILMAYDWPGNVRELENLIER-LVVISS 615 Query: 433 YELRPQDILLPDYDAATVAVGEDAMEG--SLDEITSRFERSVLTQLYRNYPSTRKLAKRL 490 ++ +D L +A V + ++ L E ER +L + + Y +TR++A++L Sbjct: 616 SDIISRDELPVHLSSAAVDNPQVSVSAIIPLKEAVESVERQLLERAFAQYRTTRQMAQKL 675 Query: 491 GVSHTAIANKLREYGLS 507 V+ + + K +YG+S Sbjct: 676 EVNASTVVRKAAKYGIS 692 >UniRef50_P0AFB9 Nitrogen regulation protein NR(I) n=502 Tax=Bacteria RepID=NTRC_ECO57 Length = 469 Score = 220 bits (561), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 134/331 (40%), Positives = 186/331 (56%), Gaps = 28/331 (8%) Query: 204 SQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNC 263 + I+ +P M+ V +L+ S +LI G++GTGK+L A+A H+ SPRA P++ALN Sbjct: 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNM 197 Query: 264 ASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLN 316 A+IP+D +ESELFGH A ++G FEQA+GG++ LDEIG+M +Q +LLR L Sbjct: 198 AAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLA 257 Query: 317 DGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQD 376 DG F RVG V VDVR+I AT +NL + VQ+G FREDL++RLNV+ ++LPPLR+ +D Sbjct: 258 DGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERRED 317 Query: 377 IMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELR 436 I L F+ A E GV L + LTR AWPGNVRQL+N G E+ Sbjct: 318 IPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVL 377 Query: 437 PQDI---------------LLPDYDAATVAVGED-----AMEGSLDEITSRFERSVLTQL 476 QD+ + PD A +A D + L E ER++LT Sbjct: 378 IQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSEAQPELERTLLTTA 437 Query: 477 YRNYPSTRKLAKR-LGVSHTAIANKLREYGL 506 R+ ++ A R LG + KL+E G+ Sbjct: 438 LRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 >UniRef50_A0LGU2 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LGU2_SYNFM Length = 452 Score = 220 bits (560), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 125/336 (37%), Positives = 190/336 (56%), Gaps = 16/336 (4%) Query: 182 LRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKD 241 LR I R+ Q++ + F I+A S MKH + +KLA + +L+TG+TGTGK Sbjct: 121 LRDEIDYLRRQQDI----IYDFDGIIAASASMKHAMSTIRKLAHSDSVVLMTGETGTGKS 176 Query: 242 LFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGS 294 + + A H S R KP++ +NCA+IPE +ESELFGH A + + G EQANGGS Sbjct: 177 ILSGAIHFNSARRRKPFVKINCANIPEALLESELFGHEKGAFTSANKTRVGRLEQANGGS 236 Query: 295 VLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFRE 354 V LDEIGE+S +QAK LR L + F R+G + +H D+R+I AT KNL E V G FRE Sbjct: 237 VFLDEIGELSLALQAKFLRVLEEKAFERLGGNQTIHSDIRIIAATNKNLDEQVTNGAFRE 296 Query: 355 DLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPG 414 DLYYR+NVL ++LPPLR+ + I PL+ + + ++ + Y WPG Sbjct: 297 DLYYRVNVLRVHLPPLRNRRECIEPLSYHLLGKICRTARKRIEGFLPEVIALFKDYHWPG 356 Query: 415 NVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLT 474 N+R+L N I R++ + + +++ LP A D + +L E+T R + +L Sbjct: 357 NIRELSNTIERSVFLEENRVIHAENVFLP-----LPARRSDRTDSTLKELTLREKEMILD 411 Query: 475 QLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKK 510 L + + + A LG++ + K+++YG++ + Sbjct: 412 ALEACHWTQKDAASMLGITPRMLNYKVKKYGITHPR 447 >UniRef50_A8ARB9 Putative uncharacterized protein n=1 Tax=Citrobacter koseri ATCC BAA-895 RepID=A8ARB9_CITK8 Length = 385 Score = 220 bits (560), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 130/316 (41%), Positives = 181/316 (57%), Gaps = 21/316 (6%) Query: 203 FSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALN 262 FS I+ S M+ ++E+A K+A +LI G+TGTGK+L A A H + R P++ +N Sbjct: 75 FSDIICSSQSMQVLIEKALKIADSKYTVLIRGETGTGKELLARAIHNSGQRRFYPFIPVN 134 Query: 263 CASIPEDAVESELFGHAP--------EGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRF 314 C+++PE +ESELFG+ GKKG FE A+ G++ LDE GEM +QAKLLR Sbjct: 135 CSTLPEALMESELFGYEKGAFSGADGRGKKGLFEMADKGTLFLDEFGEMPLNLQAKLLRV 194 Query: 315 LNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCP 374 L DG RRVG + V+ R+I AT NL E+V++ + R DL+YR+NVLTL +PPLR+ P Sbjct: 195 LQDGGIRRVGGAQVIPVNARIIVATNANLEEMVEQRLLRADLWYRINVLTLTIPPLRERP 254 Query: 375 QDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYE 434 DI L FV ++A E R L L + WPGNVR+L+N I R + Sbjct: 255 SDITLLISHFVQKYAKEFQ-RRLILDKACFESLRHHHWPGNVRELENTIIRLML------ 307 Query: 435 LRPQDILLPDYDAATVAVGEDAMEGSLD----EITSRFERSVLTQLYRNYPSTRKLAKRL 490 + D++ D D V + A+ G D E ER ++ Q+ S+R +AK L Sbjct: 308 MSESDVITCD-DLGLSTVSQ-ALPGHPDRPFKEQVQHAERQLIEQMVEENVSSRHIAKAL 365 Query: 491 GVSHTAIANKLREYGL 506 GVSHT + NK+R Y L Sbjct: 366 GVSHTTVLNKIRSYQL 381 >UniRef50_Q1ITP4 Two component, sigma54 specific, transcriptional regulator, Fis family n=8 Tax=Bacteria RepID=Q1ITP4_ACIBL Length = 485 Score = 220 bits (560), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 113/244 (46%), Positives = 159/244 (65%), Gaps = 8/244 (3%) Query: 202 AFSQIVAVSPKMKHVVEQAQKLAMLSAP-LLITGDTGTGKDLFAYACHQASPRAGKPYLA 260 + IV VS KM ++ K+A A +L+ G++GTGKDL A A H S R KP++A Sbjct: 140 GYHDIVGVSQKMTELMVFVAKIATSEATTILVQGESGTGKDLVAKAIHYQSRRQEKPFVA 199 Query: 261 LNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLR 313 +NC++IPE +E+ELFGH A KKG FE A+GG++ LDEIGE+SP +QAKLLR Sbjct: 200 INCSAIPETLMEAELFGHEKGAFTDAKAMKKGLFEAADGGTLFLDEIGELSPLLQAKLLR 259 Query: 314 FLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDC 373 L D RRVG ++ VDVRVI A+ ++L ++V+ G FR+DLYYRL ++++ LPPLRD Sbjct: 260 VLEDQVIRRVGGVRDMQVDVRVIAASNRDLEKMVRDGTFRQDLYYRLAIISVFLPPLRDR 319 Query: 374 PQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGY 433 +DI+PL E F+ R+ + + + +L ++ WPGNVR+LKNAI RA+ + Sbjct: 320 KEDILPLVEFFIERYNRKFKKSIRGVTDNTRRLLMKHDWPGNVRELKNAIERAMILDEAE 379 Query: 434 ELRP 437 LRP Sbjct: 380 NLRP 383 >UniRef50_Q0SQI9 Phosphocarrier HPr/sensory box protein/sigma-54 dependent transcriptional regulator n=21 Tax=Clostridium RepID=Q0SQI9_CLOPS Length = 668 Score = 219 bits (559), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 121/319 (37%), Positives = 182/319 (57%), Gaps = 12/319 (3%) Query: 201 SAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLA 260 S+F+ I+ + +K ++ QK + ++ +LI G++GTGK+L A A H S R KP++ Sbjct: 353 SSFNNIIGSTRTLKDIMYMCQKASETTSTVLIRGESGTGKELIAKAIHNNSNRKNKPFVR 412 Query: 261 LNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLR 313 +NCASIPE+ +ESELFG+ A + K G F A+ G++ LDEIG+M MQ KLLR Sbjct: 413 VNCASIPENLLESELFGYEKGAFTGAVQSKPGKFAIADTGTIFLDEIGDMPLSMQVKLLR 472 Query: 314 FLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDC 373 L + VG ++DVRVI AT +NL E+++ G FREDLYYRLNVL +NLPPLR+ Sbjct: 473 VLQEREIESVGGITPKNIDVRVIAATNRNLEEMIEDGSFREDLYYRLNVLGINLPPLRER 532 Query: 374 PQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGY 433 +DI L E F+ + + + D +L Y+WPGN+R+L+N + RA+ DG Sbjct: 533 KEDIPELAEHFITKLNKKLHKTILGIKQDALNLLIEYSWPGNIRELENIMERAINLCDGD 592 Query: 434 ELRPQDILLPDYDAATVAVGEDAMEGSLDEIT--SRFERSVLTQLYRNYPSTRKLAKRLG 491 + LP Y V + +D I +E+ ++ + Y S K K LG Sbjct: 593 YIDSS--YLPSY-LKPVESKSFNLNIDIDHILPFEEYEKQIIEAAMKKYKSFNKAGKALG 649 Query: 492 VSHTAIANKLREYGLSQKK 510 ++H ++ K ++Y + KK Sbjct: 650 LTHRTVSLKCKKYNIEVKK 668 >UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=Aquificales RepID=C0QRG3_PERMH Length = 442 Score = 219 bits (559), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 114/311 (36%), Positives = 183/311 (58%), Gaps = 14/311 (4%) Query: 204 SQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNC 263 + I+A SP+MK V+E A+K+A +LITG++GTGK++ A H+ S R +P++A+NC Sbjct: 136 TDIIAESPQMKQVLETAKKIAPFDTTVLITGESGTGKEMIANFIHKNSLRKERPFIAINC 195 Query: 264 ASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLN 316 +IP + +ESELFG+ A KKG E+A GG++ LDEIGE+ +Q KLLR L Sbjct: 196 GAIPSELLESELFGYKKGAFTGANTDKKGLIEEAEGGTLFLDEIGELPLDLQVKLLRVLQ 255 Query: 317 DGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQD 376 + + +G + +DVR I AT ++L ++V++G FREDLYYR+NV+ +++PPLR+ +D Sbjct: 256 ENEIKPIGSNRPKKIDVRFIAATNRDLKKMVEEGKFREDLYYRINVIPIHIPPLRERKED 315 Query: 377 IMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELR 436 I+PL + F+ +F G+P+ +L+ L Y + GNVR+L+N I RA+ +G E+ Sbjct: 316 IIPLAQYFINKFCSRYGIPKKRLSEKAREKLLNYDYKGNVRELENIIERAVLTTEGEEIT 375 Query: 437 PQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYP-STRKLAKRLGVSHT 495 +P + + ++ E FE S L L + K +K G++ Sbjct: 376 D----IPVTVSKRYILSQEL--KPFKEAKKEFEESYLKNLLEKTDFNISKASKIAGITRA 429 Query: 496 AIANKLREYGL 506 I ++ YG+ Sbjct: 430 QIYRMIKRYGI 440 >UniRef50_B8IZX3 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8IZX3_DESDA Length = 522 Score = 219 bits (558), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 129/321 (40%), Positives = 184/321 (57%), Gaps = 16/321 (4%) Query: 206 IVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCAS 265 V S M+ V Q ++A + + G++GTGK+L A A H S RAGKP+++LNCA+ Sbjct: 194 FVGNSEGMQKVYAQIAQVAPSVTTVFLQGESGTGKELAARAIHSGSARAGKPFISLNCAA 253 Query: 266 IPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDG 318 +PE+ +ESELFGH A +KG FE A+GG++ LDE+GE+S QAKLLR L + Sbjct: 254 LPENLIESELFGHERGAFTGASATRKGRFELAHGGTLFLDEVGELSLMTQAKLLRVLQER 313 Query: 319 TFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIM 378 F R+G +VDVR I AT +NL +V K FR DL+YRLNV + LPPLR P+DI+ Sbjct: 314 AFERLGGMETHYVDVRFITATNRNLEHMVAKESFRRDLFYRLNVFPIYLPPLRGRPEDIL 373 Query: 379 PLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQ 438 PL F+ +FA G +L+ + +L RYAWPGN+R+L+N + RA+ L L Sbjct: 374 PLANHFIRKFAQANGRENVRLSLSVMDMLQRYAWPGNIRELENVMERAVLLLGREGLVLP 433 Query: 439 DILLPDYDAATVA--VGEDA------MEGSLDEITSRFER-SVLTQLYRNYPSTRKLAKR 489 L P A A GE A GSL + ER S++ L + K A Sbjct: 434 QHLPPALHGAHCAGISGESACAARPGFSGSLQDQLDELERASIVEALEFSQGQMGKAAAS 493 Query: 490 LGVSHTAIANKLREYGLSQKK 510 LG++ +A ++++Y ++ K+ Sbjct: 494 LGLTERIMALRMKKYEINYKE 514 >UniRef50_A6TPV3 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TPV3_ALKMQ Length = 627 Score = 219 bits (558), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 115/314 (36%), Positives = 188/314 (59%), Gaps = 9/314 (2%) Query: 202 AFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLAL 261 AF +I+ S +M+H+ A K A S+ +L+ G++GTGK + A A H+A + ++ + Sbjct: 307 AFPEIIGDSEEMRHIRMMAAKAAKTSSNVLLLGESGTGKTILAKAIHRAGEKESMAFVQI 366 Query: 262 NCASIPEDAVESELFGHAP--------EGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLR 313 NC SIPE+ +ESE+FG+ EGKKG FE A+GG++ LDEIGE+ +Q KLL Sbjct: 367 NCGSIPENLLESEMFGYEKGAFTGANKEGKKGLFEVADGGTLFLDEIGELPSALQVKLLH 426 Query: 314 FLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDC 373 + +F RVG + +++V+VR+I AT +NL E +++G FREDLYYR+NVL + +PPLR Sbjct: 427 VIQHRSFYRVGGNEKINVNVRIIAATNRNLEEEMRQGRFREDLYYRINVLPIWIPPLRQR 486 Query: 374 PQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGY 433 DI L + + R + GV L+A+ L +Y WPGN+R+L+N + RA+ D Sbjct: 487 KDDIQLLVKKLLHRTCQQAGVEEKLLSAEALLKLRKYHWPGNIRELENTLERAMHLSDSR 546 Query: 434 ELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLA-KRLGV 492 L +++ D+ E+A ++ E + E+ ++ + +++ RK A ++LG+ Sbjct: 547 ILLSGQMMVKVTDSFVQYQYEEAPLPTIKEAVRKCEKELINETLKHFKGNRKKAMQQLGI 606 Query: 493 SHTAIANKLREYGL 506 + T K++EY + Sbjct: 607 AKTRFYEKIKEYKI 620 >UniRef50_A1AUC3 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Desulfuromonadales RepID=A1AUC3_PELPD Length = 465 Score = 219 bits (558), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 122/285 (42%), Positives = 169/285 (59%), Gaps = 19/285 (6%) Query: 169 ENDQHVLTGAVVMLR-STIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLS 227 E D VLT R +R R LQ A + ++ P+M V K+A + Sbjct: 111 ERDNLVLTLQRAFERIGLVRENRVLQKRVAS-TTPIPSMLGDHPRMAEVFRVVAKIAATT 169 Query: 228 APLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH-------AP 280 + +LI G++GTGK+L A A H+ S R P++A+NCA+IPE +ESELFGH A Sbjct: 170 STVLIVGESGTGKELVARAIHEGSQRRDNPFMAINCAAIPETLIESELFGHEKGSFTGAH 229 Query: 281 EGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQ 340 + G FE ANGG+V LDEIGEM+ MQAKLLR + + RRVG + +DVR+I AT Sbjct: 230 ARELGVFEAANGGTVFLDEIGEMNVSMQAKLLRAIQEKEVRRVGGRVNIPLDVRIISATN 289 Query: 341 KNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFA-----DEQGVP 395 K L + +++G FREDLYYRLNV+ +NLPPLR+ D+ L E FV +++ D +G+ Sbjct: 290 KELEQEIRRGSFREDLYYRLNVIRINLPPLRERGSDVKTLAEFFVKKYSLATGIDVEGIS 349 Query: 396 RPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDI 440 RP L +L Y+WPGNVRQL++ I RA+ + + P D+ Sbjct: 350 RPAL-----KLLMNYSWPGNVRQLESVIERAVLMAESSVIEPGDL 389 >UniRef50_A6LVD4 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LVD4_CLOB8 Length = 689 Score = 218 bits (556), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 132/394 (33%), Positives = 209/394 (53%), Gaps = 46/394 (11%) Query: 153 NGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTI---RMGRQLQNVAAQDV--------- 200 NG + + P+ + E +TG V ++++ ++ +L V+A+ Sbjct: 301 NGVIIVSNVNPIVIDGE-----ITGVVSIVKNVTEVQKLSEKLTQVSAKADYLEEELMRT 355 Query: 201 ----SAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGK 256 SAFS+ + S K+ + K A +LI G++GTGK+L A H +S + Sbjct: 356 KKPDSAFSKYIGHSGKILDALATTLKAAKTDTTVLIRGESGTGKELIAEGIHFSSKNSKG 415 Query: 257 PYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQA 309 P++ +NCA+IP++ +ESELFG+ A + K G FE A G++LLDEIGEM MQA Sbjct: 416 PFIRVNCAAIPQNLLESELFGYEKGAFTGAIKRKLGKFELAQNGTILLDEIGEMDKSMQA 475 Query: 310 KLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPP 369 K+LR + + F+R+G + + ++VR+I AT +NL E+V+ FREDLYYRLNV+ + LPP Sbjct: 476 KVLRVIQEKEFQRIGGEETIKINVRIIAATHRNLEEMVKSMEFREDLYYRLNVIPIFLPP 535 Query: 370 LRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYR--AL 427 LR+ QDI PL E F+ + + D L Y WPGN+R+L+N + R AL Sbjct: 536 LRERKQDIAPLLEHFIDKIGKRINKRITVVTNDAMESLLEYKWPGNIRELENLVERIMAL 595 Query: 428 TQLDGYELRPQDILLPDYDAATVAVGEDAMEGS----------LDEI--TSRFERSVLTQ 475 + + EL LP Y + ++A++ DEI +E+ ++ + Sbjct: 596 NETEVIELSD----LPAYMRKDINTVKNAIKSKNNNEIDMLIETDEILPLKEYEKIIIEK 651 Query: 476 LYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQK 509 + Y S K LG++H +A K R+YG+ +K Sbjct: 652 ALKKYGSYNAAGKALGLTHKTVAAKARQYGIEKK 685 >UniRef50_Q897M6 Transcriptional regulatory protein n=1 Tax=Clostridium tetani RepID=Q897M6_CLOTE Length = 567 Score = 218 bits (556), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 118/317 (37%), Positives = 191/317 (60%), Gaps = 17/317 (5%) Query: 202 AFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLAL 261 +F I+ S K+ + A+K A ++ +LI G++GTGK+LFA+A H S R ++ L Sbjct: 256 SFDNIIGKSDKINKTKDLAKKAAKTNSNVLIRGESGTGKELFAHAIHMESERVYGNFIKL 315 Query: 262 NCASIPEDAVESELFGH--------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLR 313 NCA+IP D +ESELFG+ EGK G FE A+GG++ LDEIG+M MQAKLLR Sbjct: 316 NCAAIPRDLLESELFGYEGGAFTGAKKEGKIGKFELADGGTIFLDEIGDMPLHMQAKLLR 375 Query: 314 FLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDC 373 L + R+G +DVRVI AT ++L +++++G FREDLYYRLNV+T+N+PPLR+ Sbjct: 376 VLQEREVERIGATRSKKIDVRVISATNRDLEKMIKEGEFREDLYYRLNVVTVNIPPLRER 435 Query: 374 PQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGY 433 +DI L+E + + + + G + + + L Y W G VRQL+N I RA+ ++ Sbjct: 436 REDIKILSEYLLEKISKKLGKKTKSFSKEAMSCLMNYKWEGGVRQLENIIERAVNLVEHN 495 Query: 434 ELRPQDILLPDYDAATVAVGEDAMEGS-LDEITSRFERSVL--TQLYRNYPSTRKLAKRL 490 E+ + P + + + +E S L+++ ++ E+ ++ T +Y N+ T AK+L Sbjct: 496 EM-----IEPKHFPGNIVSNKYIVEDSDLNKLINQVEKDIILETLIYCNWNKTLA-AKKL 549 Query: 491 GVSHTAIANKLREYGLS 507 +S T++ K+ ++ ++ Sbjct: 550 NISRTSLYEKIAKHNIA 566 >UniRef50_D0LUW9 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LUW9_HALO1 Length = 623 Score = 218 bits (556), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 129/338 (38%), Positives = 192/338 (56%), Gaps = 37/338 (10%) Query: 205 QIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCA 264 ++V P+M+ V +K+A + +LI G+TG GK++ A A H++ R +P++ LNCA Sbjct: 292 ELVIRDPQMQRVHALVRKVADTNITVLILGETGVGKEVVAEAVHRSGGRQQRPFVRLNCA 351 Query: 265 SIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLND 317 SIP + +ESELFGH A G+FE A+GG++ LDEIGEM +QAKLLR L Sbjct: 352 SIPGNLLESELFGHVKGAFTGADRQHTGYFEAASGGTLFLDEIGEMPAALQAKLLRVLEQ 411 Query: 318 GTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDI 377 RVG+ E+ VD RV+CAT ++L + V++G FREDLY+R++V T+ +PPLRD +I Sbjct: 412 RRITRVGDTREIAVDTRVVCATHRDLEDEVRQGRFREDLYFRISVFTVLVPPLRDRVSEI 471 Query: 378 MPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRP 437 PL F R A EQG P+L+ + VL + WPGNVR+L+NA+ RA L+ Sbjct: 472 APLAHWFARRAAREQGGAAPRLSDEALAVLEGHQWPGNVRELRNAVERACV------LQE 525 Query: 438 QDILLPDY----------------------DAATVAVGEDAMEGSLDEITSRFER-SVLT 474 ++LP++ AA+ A G A E + E + ER +++ Sbjct: 526 AGVILPEHLPERLRDARAPAGPGALAGANTSAASAADGPPA-EVDVREYIATVERDAIVA 584 Query: 475 QLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKKNE 512 L + A+RLG+S ++ KL +YGL +K + Sbjct: 585 ALEECGGNQTHAARRLGMSRRSLIYKLEKYGLKKKPGQ 622 >UniRef50_C0GEG9 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GEG9_9FIRM Length = 476 Score = 218 bits (556), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 119/324 (36%), Positives = 185/324 (57%), Gaps = 26/324 (8%) Query: 205 QIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCA 264 ++V +S KMK + E+A ++A +LI+G +G+GK++ A H +SPR P++ +NC Sbjct: 160 EMVVISRKMKDICERAIRVAQTDTNVLISGPSGSGKEMIAKLIHNSSPRKSGPFVQINCG 219 Query: 265 SIPEDAVESELFGH--------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLN 316 +IPE +ESELFG+ +GK G E A+ G++LLDEIG++SP +Q KLLR + Sbjct: 220 AIPETLLESELFGYEKGAFTGAGRQGKIGLMEMADLGTILLDEIGDLSPLVQVKLLRAIQ 279 Query: 317 DGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQD 376 + RVG + ++VR+I AT KNL ++V++ +FREDLYYRLNV+ +++PPLR+ + Sbjct: 280 EQVIYRVGSTTPIKLNVRIIAATNKNLEKMVEENLFREDLYYRLNVIPIHIPPLRERREA 339 Query: 377 IMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELR 436 I+PL F+ F + G + L+ ++ Y WPGNVR+L+N I R + D Sbjct: 340 IVPLALHFLKSFNQKHGTDK-SLSPEVCACFEEYDWPGNVRELENLIERMVVISD----- 393 Query: 437 PQDILLPDYDAATVAVG-----------EDAMEGSLDEITSRFERSVLTQLYRNYPSTRK 485 + +L P + V+ G E E SL + ER + + + S RK Sbjct: 394 -EKVLTPYWLPRNVSSGQAPRSDMSPKQECTAEISLKQARESAERDAICRALSLHGSIRK 452 Query: 486 LAKRLGVSHTAIANKLREYGLSQK 509 AK LGV H+ + K++ GL K Sbjct: 453 AAKSLGVDHSTVVRKMKSLGLEHK 476 >UniRef50_A7GLU4 Putative PAS/PAC sensor protein n=1 Tax=Bacillus cytotoxicus NVH 391-98 RepID=A7GLU4_BACCN Length = 457 Score = 218 bits (556), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 123/318 (38%), Positives = 190/318 (59%), Gaps = 14/318 (4%) Query: 197 AQDVSAFSQ-IVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAG 255 + D + F Q I+ + KMK++++ +K+A +LI G++GTGK + A HQ S R Sbjct: 139 SHDDNLFGQTILTNNEKMKNLIKFCEKVASTDTTVLIQGESGTGKGVLANYIHQMSKRRK 198 Query: 256 KPYLALNCASIPEDAVESELFGHAP--------EGKKGFFEQANGGSVLLDEIGEMSPRM 307 P+L +NCA+IPE+ +ESELFG++ G+ G FE AN G++ LDEIGE+S ++ Sbjct: 199 GPFLTVNCAAIPEELLESELFGYSKGAFTGAKRSGQVGLFETANHGTIFLDEIGEISLKV 258 Query: 308 QAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNL 367 QAK+L+ + + F VG + VDVR+I AT +NL E+VQ+ FREDLYYRLNV+ + L Sbjct: 259 QAKILQVIQERQFIPVGGRNLKKVDVRIIAATNQNLYEMVQQKQFREDLYYRLNVIDIKL 318 Query: 368 PPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRAL 427 PPLR+ +D + LT F+ +F + V R ++ D+ +++RY WPGNVRQL+N I R + Sbjct: 319 PPLRERMEDAISLTYYFLNKFNKKYQVNRI-VSQDVLDMISRYLWPGNVRQLENVIERLV 377 Query: 428 TQLDGYELRPQDILLPDYDAATVAVGE-DAMEGSLDEITSRFERSVLTQLYRNYPSTRKL 486 D ++ D LP+ + + +LD E ++ Y+ + STRK+ Sbjct: 378 VTSDSV-IQSSD--LPEMILQAAETKQFYSRPTALDAAIRELEEQMVVNSYKKFGSTRKV 434 Query: 487 AKRLGVSHTAIANKLREY 504 A L +S T + +R+Y Sbjct: 435 AADLSISQTRASKLIRKY 452 >UniRef50_A0LLZ0 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LLZ0_SYNFM Length = 466 Score = 218 bits (556), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 127/342 (37%), Positives = 190/342 (55%), Gaps = 24/342 (7%) Query: 181 MLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGK 240 +LR + + R +Q AF +V S +M+ V E Q +A +LITG++GTGK Sbjct: 125 LLRENLNLQRHVQMH-----EAFQNLVGKSARMQRVYEAIQMVAKTDLTVLITGESGTGK 179 Query: 241 DLFAYACHQASPRAGKPYLALNCASIPEDAVESELFG-------HAPEGKKGFFEQANGG 293 DL A H S R P++A+NC +IPE+ +ESELFG HA + + G F++A+ G Sbjct: 180 DLACRAIHALSQRRSNPFVAVNCPAIPENILESELFGYRKGAFTHATQNRTGLFQEAHKG 239 Query: 294 SVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFR 353 ++ LDEIG++SP +QAKLLR L + + +G+ V VDVRV+ +T ++L + +++G FR Sbjct: 240 TIFLDEIGDISPNIQAKLLRVLQEKVIKPLGDTKSVSVDVRVVASTNRDLGDRIRRGEFR 299 Query: 354 EDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWP 413 EDL+YRLNVL + +P LR+ P+DI L + + PR +A +L + R WP Sbjct: 300 EDLFYRLNVLPIVMPSLRERPEDIPLLVNHLIEKHCAALNRPRKSVAPELTEIFLRAPWP 359 Query: 414 GNVRQLKNAIYRALTQLDGYELRPQDI--------LLPDYDAATVAVG-EDAMEGSLDEI 464 GNVR+L+N I R L E+ P+D+ +P DA + V +DA E +L Sbjct: 360 GNVRELENVIVRGLLFAPRDEILPEDVGFHRPVKGRIPGKDAPSTNVPYKDAKEEALRGF 419 Query: 465 TSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 + + VLT N KL G+ A+ LR YG+ Sbjct: 420 HAEYFGGVLTATRGNVSHAAKLC---GLERQALQQLLRRYGI 458 >UniRef50_B2A8I7 Putative sigma54 specific transcriptional regulator n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A8I7_NATTJ Length = 601 Score = 218 bits (555), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 155/485 (31%), Positives = 263/485 (54%), Gaps = 32/485 (6%) Query: 41 LNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKS 100 L +AE ++ SF M+E+ +A + + + + +SA++ ++ E +L+VD + Sbjct: 129 LTYAEEKYRSFIKKMSEL--LADSFSNEQI-ILEKTKAYAQVSAIVNSVYEGILAVDDYN 185 Query: 101 KVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQD-SHNEHVVINGQNFLM 159 +V N A L + D + ++ F + + H ++ G + L+ Sbjct: 186 EVIACNDAVRDLLDIRGDII-GQNVENVVPELPFEGVITTGTSKLGHEQYFSKVGIHCLV 244 Query: 160 EITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVS-AFSQIVAVSPKMKHVVE 218 + P+ + ++ + GAV +R T + + V+ +F+ I++ + +K + E Sbjct: 245 NMKPIKMNNK-----VVGAVATVRDTKEIEKLAFRVSGNTAGFSFNAIISKNNNIKELKE 299 Query: 219 QAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH 278 +A+K++ + +LI G++GTGK+L+A A H ASPR P++ ++C +IPE +ESELFG+ Sbjct: 300 KAKKVSQTDSTVLIRGESGTGKELYARAIHSASPRWKGPFVPVHCGAIPETLLESELFGY 359 Query: 279 APEG--------KKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVH 330 K G FE A GG++ LDEIG+M +Q KLLR + DGTF R+G + Sbjct: 360 ESGAFTGAKKGGKIGKFELAEGGTIFLDEIGDMPIHLQTKLLRVMQDGTFERIGSPETIK 419 Query: 331 VDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFAD 390 +DVRV+ AT + L E ++K FR DL+YRLNV+ L +P LR+ +DI L F+ ++A+ Sbjct: 420 IDVRVLAATHQPLEEFIEKNKFRRDLFYRLNVVPLFIPALRERREDISLLLNHFLNKYAN 479 Query: 391 EQGVPRPKLAADLNTVLTRYAWPGNVRQLKN-AIYRALTQLDGY------ELRPQDILLP 443 + +P L+ +L + L +Y+WPGNVR+L+N A Y GY +D LL Sbjct: 480 KLKREQPALSRELMSFLEQYSWPGNVRELENVAEYFININEKGYLDLGDLPKNMKDKLLE 539 Query: 444 DYDAATVAVGEDAMEGSLDEITSR-FERSVLTQLYRNYPSTRKL-AKRLGVSHTAIANKL 501 D VG+D + L+E+ R FE++V ++Y ++L A +LGVS + KL Sbjct: 540 TQDYQK-NVGDDEIL-PLEELEKRSFEKAV--KIYGISEQGKQLMAGKLGVSRATVYRKL 595 Query: 502 REYGL 506 ++YGL Sbjct: 596 KKYGL 600 >UniRef50_C3AI49 Sigma54 specific transcriptional regulator, Fis n=5 Tax=Bacillus RepID=C3AI49_BACMY Length = 465 Score = 218 bits (555), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 143/452 (31%), Positives = 234/452 (51%), Gaps = 28/452 (6%) Query: 81 ALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRL--RNHTAAQLINGFNFLRWL 138 L LL ++ E + V+ K + N A+ +++ K +++ RN L L+ L Sbjct: 11 TLHTLLSSVEEAISIVNTKGIMLYWNEAAEKMYDIKKEKIIGRNVQEFFLKEDIMNLKVL 70 Query: 139 ESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHV--------LTGAVVMLRSTIRMGR 190 E++ H+ ++ L+ TP+Y +EN++ + +T + + Sbjct: 71 ENQQPVRDIYHLPRPDKHVLISTTPIY--NENNELIGSMSVEKDITATIKLNEKLTSTSE 128 Query: 191 QLQNVAAQDVS-----AFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAY 245 +LQ + Q + FS I + ++H++ +K+A A +LITG++G GK+LFA Sbjct: 129 ELQQLKQQMIQNNRDDPFSNIKGNNLAIQHIIHDMKKVAKTDATILITGESGVGKELFAQ 188 Query: 246 ACHQASPRAGKPYLALNCASIPEDAVESELFGH--------APEGKKGFFEQANGGSVLL 297 A H+AS R+ K ++ +NC +IP ESELFG+ A GK G E A+GG++ L Sbjct: 189 AIHEASLRSKKAFIPINCGAIPNALFESELFGYESGAYTGAAKGGKPGKIELADGGTLFL 248 Query: 298 DEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLY 357 DE+GE+ MQ KLLR L + R+G +DVR+I AT + L ++V G FR DL+ Sbjct: 249 DEVGELPLDMQVKLLRALQEKEIYRIGGQTPKKIDVRIIAATNRILEDMVLNGTFRSDLF 308 Query: 358 YRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVR 417 YRLNV T +PPLR+ DI L F F+ + P P + + L Y+WPGN+R Sbjct: 309 YRLNVFTACIPPLRERTDDISYLAHHFFKEFSFKYNKPTPFVHQEATKRLHAYSWPGNIR 368 Query: 418 QLKNAIYRALTQLDGYELRPQDI--LLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQ 475 +L+N I R + +G E+ DI LLP + + V + + + DE S + +L Sbjct: 369 ELRNFIERLIVLHEGSEIYESDILKLLPQAKSFSEPVSQTTLSLT-DERESLEKTRILQT 427 Query: 476 LYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 L + Y + AK+LG+S + K+++Y ++ Sbjct: 428 LQQTYGNKSITAKKLGMSRANLYKKIKKYRIT 459 >UniRef50_P28787 Nitrogen regulation protein NR(I) n=29 Tax=Gammaproteobacteria RepID=NTRC_PROVU Length = 473 Score = 218 bits (555), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 137/344 (39%), Positives = 193/344 (56%), Gaps = 33/344 (9%) Query: 194 NVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPR 253 N A + + S ++ +P M+ V +L+ S +LI G++GTGK+L A+A H+ SPR Sbjct: 129 NNAENILQSVSDMIGEAPAMQEVYRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPR 188 Query: 254 AGKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPR 306 A P++ALN A+IP+D +ESELFGH A + ++G FEQANGGS+ LDEIG+M Sbjct: 189 ALAPFIALNMAAIPKDLIESELFGHEKGAFTGASQVRQGRFEQANGGSLFLDEIGDMPLD 248 Query: 307 MQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLN 366 +Q +LLR L +G F RVG V VDVR+I AT ++L + V +G FREDLY+RLNV+ + Sbjct: 249 IQTRLLRVLAEGQFYRVGGYAPVKVDVRIIAATHQDLEKRVNEGDFREDLYHRLNVIRIQ 308 Query: 367 LPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRA 426 LPPLRD +DI L F+ + A E GV L + Y W GNVRQL+N + R Sbjct: 309 LPPLRDRTEDIPSLARYFLQKTAKELGVETKSLHEQSLKTMMEYVWSGNVRQLEN-VCRW 367 Query: 427 LTQLDG-YELRPQD----ILLPDYDAATV------------------AVGEDAMEGSLDE 463 LT + E+ PQD I L D A + A+GE E L++ Sbjct: 368 LTVMTASQEIMPQDLPSEIRLADEKAKNINRLTSQHWSQHLSLWADEALGE-GKENILND 426 Query: 464 ITSRFERS-VLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 +FER+ +L+ L + A+ LG + KL+E G+ Sbjct: 427 ALPQFERTLLLSALAYTQGHKQDAARLLGWGRNTLTRKLKELGI 470 >UniRef50_A6TVV8 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Alkaliphilus RepID=A6TVV8_ALKMQ Length = 470 Score = 218 bits (555), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 117/316 (37%), Positives = 191/316 (60%), Gaps = 11/316 (3%) Query: 202 AFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLAL 261 +F IV + +M ++ E A+K A ++ +LI G++GTGK+ FA+A H+AS R ++ + Sbjct: 157 SFEHIVTQNRQMIYLKELARKAAESNSTVLIQGESGTGKEFFAHAIHRASLRRYGSFITI 216 Query: 262 NCASIPEDAVESELFGH--------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLR 313 NCA+IP + +ESELFG+ +GK G FE NGG+++LDEIG M MQAK+LR Sbjct: 217 NCAAIPNELLESELFGYDAGAFTGAKKQGKVGKFELGNGGTIVLDEIGAMPLEMQAKILR 276 Query: 314 FLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDC 373 L F R+G + + +DVR+I AT + L E +++G FR+DLYYRLNV+ + +PPLR+ Sbjct: 277 ILESREFERIGGNDRIQLDVRIIAATNEPLEEAIKEGRFRQDLYYRLNVIPIEIPPLRER 336 Query: 374 PQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGY 433 +DI L + + + A + G+ +L + VL +Y WPGNVR+L+N + RAL + G Sbjct: 337 IEDIPILAQRILEKLAVDLGIEMKELTFETIEVLKKYQWPGNVRELRNTLERALNIVQGD 396 Query: 434 ELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKL-AKRLGV 492 + P+D LP + + + + L +I ++ E + R+ + + AK+LG+ Sbjct: 397 MIYPED--LPGHLIESSSKSSYSHSLLLKDIMAKTEIEAIQSALRDSNGNKSVAAKQLGI 454 Query: 493 SHTAIANKLREYGLSQ 508 TA+ K++ Y +++ Sbjct: 455 HRTALYKKIQAYEMNK 470 >UniRef50_A0LIA2 Sigma54 specific transcriptional regulator, Fis family n=7 Tax=Proteobacteria RepID=A0LIA2_SYNFM Length = 1139 Score = 218 bits (555), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 134/366 (36%), Positives = 195/366 (53%), Gaps = 36/366 (9%) Query: 155 QNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMK 214 QN L+EI + Q E D L V +L S IVA SP M+ Sbjct: 801 QNRLLEIERLKGQLEQDNIALREEVSLL------------------SPHDDIVARSPAMR 842 Query: 215 HVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESE 274 V+ + +++A + +LITG+TGTGK+L A A H S R G+P + +NCAS+P +ESE Sbjct: 843 QVLLRVEQVAPTDSTVLITGETGTGKELIARAVHNLSARKGRPLVTVNCASLPPTLMESE 902 Query: 275 LFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDH 327 LFG A G FE A+GG++ LDE+GE+ P +QAK+LR L +G F R+G Sbjct: 903 LFGREKGAYTGALSRMAGRFEVADGGTLFLDEVGELPPELQAKMLRVLEEGRFERLGSTK 962 Query: 328 EVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVAR 387 +HV+VR++ AT ++L +LVQ G FR DLYYRLNV + +PPLR+ P+DI PL F+ + Sbjct: 963 SLHVNVRILAATNRDLAQLVQAGRFRRDLYYRLNVFPIAIPPLRERPEDIPPLVWAFIHQ 1022 Query: 388 FADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELR--PQDILLPDY 445 F G ++ L R+AWPGNVR+L+N I A+ G L+ P I D Sbjct: 1023 FEKRMGKHVQRVLKRSMDALERHAWPGNVRELRNVIEHAMIVSSGSTLKVFPPMIRAEDS 1082 Query: 446 DAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYG 505 A + +L+E R VLT A+ LG+ T + ++++ G Sbjct: 1083 SAEVL---------NLEESERRHILRVLTLAGWRVAGKGGAAEILGLKPTTLEARMKKLG 1133 Query: 506 LSQKKN 511 + + ++ Sbjct: 1134 VRRPRS 1139 >UniRef50_C0QUD7 Nitrogen assimilation regulatory protein n=1 Tax=Persephonella marina EX-H1 RepID=C0QUD7_PERMH Length = 456 Score = 218 bits (555), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 126/344 (36%), Positives = 202/344 (58%), Gaps = 35/344 (10%) Query: 192 LQNVAAQD---VSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACH 248 +N +AQD I+ SP+++ + + A ++A P+LITG+TGTGK+L A Sbjct: 119 FRNRSAQDGVLCQYLCSIIGSSPQLREICKLAGEVAPTDLPVLITGETGTGKELLARGIW 178 Query: 249 QASPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIG 301 + S R+ KP++A+NCA+IPE+ +ESELFG+ A + K+G FE A+GG++ LDEIG Sbjct: 179 KLSKRSNKPFIAINCAAIPENLLESELFGYEKGAFTGAEKTKEGKFELADGGTIFLDEIG 238 Query: 302 EMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLN 361 E+ Q+KLLR L +GTF RVG + E+ VDVRV+ AT ++L ++V KG FREDLYYRLN Sbjct: 239 ELPLSAQSKLLRVLQEGTFYRVGGNKEIKVDVRVMAATNRDLEDMVAKGKFREDLYYRLN 298 Query: 362 VLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKN 421 ++ L+LPPLR+ +DI + E V ++ + + + VL W GN+R+L+N Sbjct: 299 LIHLHLPPLRERKEDIPYIVECIVNKYNQKLSKSIAGASKEYMEVLKDQRWEGNIRELEN 358 Query: 422 AIYRA-------------LTQLDGYELRPQ-----DILLPDYDAATVAVGEDAMEGSLDE 463 + R+ LT L ++PQ + +L + A++ EGS++E Sbjct: 359 TVVRSMILCRDNILTVNDLTFLREKRVKPQIEDNFEEILKNRVLASLE------EGSIEE 412 Query: 464 ITSRFERSVL-TQLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 I + ++ ++ T L + K ++ LG++ + K+++YGL Sbjct: 413 IKEKIDKIIVQTALEYTKHNQVKASQLLGINRATLRKKIQKYGL 456 >UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=A7HBA5_ANADF Length = 466 Score = 218 bits (555), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 127/352 (36%), Positives = 198/352 (56%), Gaps = 14/352 (3%) Query: 168 DENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLS 227 D + ++ +V +S +R L+ Q+ F +++ SP M+ V E A+ A + Sbjct: 109 DPEELSIMMQKIVSQQSLVRENAVLRQALKQEYR-FRDLLSKSPAMQSVFELARTAARSN 167 Query: 228 APLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH-------AP 280 + +L+ G++G+GK++ A A H SPRAG P++A++CA++ E +ESELFGH A Sbjct: 168 STILVLGESGSGKEVLARAVHAESPRAGGPFVAVSCAALTESLLESELFGHEKGSFTGAI 227 Query: 281 EGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQ 340 +KG FE A+GG++ LDE+G++ P++Q LLR L + F RVG + + VDVR+I AT Sbjct: 228 SRRKGKFEAAHGGTLFLDEVGDIGPKLQLDLLRVLEERRFHRVGGNEPIEVDVRIIAATN 287 Query: 341 KNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLA 400 ++L +G FREDL+YRLNV+ + +PPLR+ +DI L E FV R + E ++ Sbjct: 288 RDLRRAAHEGKFREDLFYRLNVIPILVPPLRERREDIPLLVENFVERLSVEMKRRIEGVS 347 Query: 401 ADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGS 460 D L + WPGNVR+L+N + R G ++ D+ LP A G A S Sbjct: 348 PDAMGALMAHDWPGNVRELRNVLERGAVVATGTVIQLSDLGLPTRLEAASKPGTLA---S 404 Query: 461 LDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKKNE 512 L+E+ R +VL N + A+ LG+ + NK+R+YGL + E Sbjct: 405 LEEVEKRHVAAVLAHANGNVSQS---ARILGIDRVTLYNKMRKYGLRRDGEE 453 >UniRef50_D0LWE6 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LWE6_HALO1 Length = 684 Score = 218 bits (555), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 121/313 (38%), Positives = 180/313 (57%), Gaps = 9/313 (2%) Query: 203 FSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALN 262 F I+ S M+ + +Q +K+ A + I G+TGTGK+L A A H S R K ++A N Sbjct: 372 FENIIGESSAMQAIFDQLRKVVDTRATVCIEGETGTGKELIATAIHYESNRRDKMFVAQN 431 Query: 263 CASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFL 315 CA++PE+ +ESELFGH A KKG FE A+GG++ LDEIGEM +QAK+LR L Sbjct: 432 CAALPENLLESELFGHKKGAFTSADTDKKGLFEIADGGTLFLDEIGEMPLSLQAKVLRVL 491 Query: 316 NDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQ 375 +GT R +G E VD R+ICAT ++L V+KG FR+DLYYRL V + LPPLR+ + Sbjct: 492 QEGTIRPLGSTRERQVDARIICATNRDLAAEVEKGSFRQDLYYRLVVFPIRLPPLRERRE 551 Query: 376 DIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYEL 435 DI PL E F+ R++ E + + V++ Y WPGN+R+L+N + R + Q D Sbjct: 552 DIPPLCEHFLKRYSREFRQEVLGFSQECLDVMSTYQWPGNIRELENEVQRLVIQTDAGSW 611 Query: 436 RPQDILLPDYDAATVAVGEDA-MEGSLDEITSRFERSVLTQLYRNYPSTR-KLAKRLGVS 493 L P + A +G+L + + ER +L + R + + + + A+ LG++ Sbjct: 612 IEVSELSPRLRKVEGTLARIAPKKGTLKAMMEQVERWLLAEALREHDNNKTRTAQSLGIT 671 Query: 494 HTAIANKLREYGL 506 + KL +Y + Sbjct: 672 REGLHKKLSKYSM 684 >UniRef50_Q67SC0 Sigma-54-dependent transcriptional regulator n=2 Tax=Symbiobacterium thermophilum RepID=Q67SC0_SYMTH Length = 479 Score = 218 bits (554), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 156/464 (33%), Positives = 239/464 (51%), Gaps = 57/464 (12%) Query: 85 LLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEP-- 142 +L++L + V++VD + V AN A+ ++ G D++ ++++ + L L S Sbjct: 32 VLDSLHDGVVAVDSEGYVIYANEANTRITGLTRDQVVGRHVSEVVPNSHILDVLASRTPL 91 Query: 143 ---QDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRS---TIRMGRQL---- 192 + +HVV++ I PVY Q + GAV + R + + RQL Sbjct: 92 LGVRTRVFDHVVVS------NIVPVYHQGR-----MVGAVSVFRDITEVLALSRQLDEAR 140 Query: 193 -------QNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAY 245 +N+ A V+ I+ SP + + A+K A + +P+LI G++GTGK++ A Sbjct: 141 NTIDLLRENLTAAPVAEDGVIIGQSPAAQRMYLTARKAATVDSPVLIEGESGTGKEVMAR 200 Query: 246 ACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLL 297 H S R +P +A+NCA+IP +ESELFG+ G+ G F+ A+GG++ L Sbjct: 201 LIHNRSARRSQPLIAVNCAAIPGTLLESELFGYEEGAFTGSRKGGRPGLFQLADGGTLFL 260 Query: 298 DEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLY 357 DEIG+M P +QAKLLR L G RRVG V+VR+I AT +NL +LV++ FREDLY Sbjct: 261 DEIGDMDPGLQAKLLRALQSGEIRRVGGTTVQKVNVRIISATNQNLAQLVREKRFREDLY 320 Query: 358 YRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVR 417 YRL V+ L LPPLR+ D+ E + R + G P + + L Y +PGN+R Sbjct: 321 YRLRVIHLVLPPLRERRADLPLFLEHAMRRVCERLGRPPARFSPAALRALMAYPFPGNIR 380 Query: 418 QLKNAIYRALTQLDGYELRPQDILLPD-YDAATVAVGEDAMEG-------------SLDE 463 +L+N + +A+ +G + D L PD A T A G G +L+E Sbjct: 381 ELENVVEQAVVLAEGDVIDVGD-LPPDVVGAETAAAGPADRSGDGWLGLNDPGTFPTLEE 439 Query: 464 ITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 + ER VL R + S +LA+ LG+S + KL YGL+ Sbjct: 440 V----ERRVLEAGLRAFDSKAELARHLGLSRATLYRKLARYGLA 479 >UniRef50_P29267 Hydrogenase transcriptional regulatory protein hoxA n=22 Tax=Proteobacteria RepID=HOXA_RALEH Length = 482 Score = 218 bits (554), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 136/359 (37%), Positives = 194/359 (54%), Gaps = 21/359 (5%) Query: 169 ENDQHVLTGAVVMLRSTIRMGRQLQN---VAAQDVSAFSQIV-AVSPKMKHVVEQAQKLA 224 + D H L + LR++ + RQ + +AQ F +IV A + V E A ++A Sbjct: 127 QGDMHRLD---LELRTSTPVLRQRSSQKLASAQSAFNFERIVRAPGSPLDAVCEVAARVA 183 Query: 225 MLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH------ 278 P+++ G++GTGK+L A A H ASPRA + +++ NCA++P++ +ESELFGH Sbjct: 184 RYDLPVMVLGESGTGKELLARAIHYASPRAARAFVSENCAAVPDNLLESELFGHKRGAFT 243 Query: 279 -APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVIC 337 A E G F++ANGG++ LDEIG+ SP Q KLLR L +G R VG + VDVRVI Sbjct: 244 GAYEDHAGLFQRANGGTIFLDEIGDTSPAFQVKLLRVLQEGEVRPVGSPRWIPVDVRVIA 303 Query: 338 ATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRP 397 AT NL V G FREDLYYR+ +T+++PPLR+ D+ P+ + + A E P Sbjct: 304 ATHCNLESDVHAGRFREDLYYRIAGVTISMPPLRERSGDLQPIAAKLLEQVAQELARPGL 363 Query: 398 KLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQ--DILLPDYDAATVAVGED 455 D + Y WPGN+R+L+N IYRA+ G E+R Q + TV G Sbjct: 364 YFGGDALAAMMAYPWPGNIRELRNEIYRAVALSSGEEIRAQLFSRKVLHGQPGTVKRGPH 423 Query: 456 A----MEGSLDEITSRFERSVLTQ-LYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQK 509 G+L E E VL + L R+ + AK LG+S + KL +GL +K Sbjct: 424 VQTFPQSGTLQERLDAIEAVVLKEALLRHRWNKTHAAKELGLSRVGLRQKLLRFGLEEK 482 >UniRef50_A8UUR2 Transcriptional regulator (NtrC family) protein n=2 Tax=Aquificaceae RepID=A8UUR2_9AQUI Length = 441 Score = 218 bits (554), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 123/312 (39%), Positives = 179/312 (57%), Gaps = 17/312 (5%) Query: 203 FSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALN 262 + V S MK V+E+ ++A P+LITG++G GK++ A H+ S RA KP +ALN Sbjct: 138 YGGFVFESRAMKEVIEKVDRIACSDCPVLITGESGVGKEVIASIIHRNSDRADKPMVALN 197 Query: 263 CASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFL 315 ASIP++ +E+ELFG+ A GK+GFFE A+G ++ LDEIGEM +QAKLLR + Sbjct: 198 IASIPKELIEAELFGYEKGAFTGADSGKEGFFELADGSTLFLDEIGEMDMSLQAKLLRAI 257 Query: 316 NDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQ 375 F R+G E+ +VR+I AT ++L ELV++G FREDLYYRLNV+ +N+PPLR+ + Sbjct: 258 ETSKFYRIGGRREIESNVRIITATNRHLGELVRRGEFREDLYYRLNVVEINIPPLRERRE 317 Query: 376 DIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYEL 435 DI+PL F+ F + A LT Y W GNVR+LKN + RA+ DG + Sbjct: 318 DILPLAYHFLDLFNRKYSKNIKGFTARAENSLTSYPWYGNVRELKNIVERAVLFSDGDRI 377 Query: 436 RPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYP-STRKLAKRLGVSH 494 +DI + + S I ER +T++ + + RK ++ LG+ Sbjct: 378 DSEDI--------SCLFTHQESKKSFKTIKD-VEREYITEILKQVNFNKRKASEILGIPL 428 Query: 495 TAIANKLREYGL 506 + KL YG+ Sbjct: 429 RTLYRKLESYGI 440 >UniRef50_D2R3W1 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Planctomycetaceae RepID=D2R3W1_9PLAN Length = 611 Score = 217 bits (553), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 129/321 (40%), Positives = 181/321 (56%), Gaps = 20/321 (6%) Query: 199 DVSAFS-QIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKP 257 D SA S +++ S M + + ++A + +L+ G++G GK+L A A H++S R+ +P Sbjct: 301 DKSAVSDELIGDSKPMDDLRSRIARVARATGSVLVRGESGVGKELVARAVHRSSNRSDRP 360 Query: 258 YLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAK 310 L++NCA++P D +ES+LFGH A G+F+QA+ G++ LDE+GEM+ QAK Sbjct: 361 MLSVNCAALPRDLMESQLFGHKKGAFTGADSDHVGWFQQAHTGTLFLDEVGEMTLEGQAK 420 Query: 311 LLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPL 370 LLR L F VG EV VDVRVI AT ++L E V++G FREDLYYRL+V L +PPL Sbjct: 421 LLRILEGHPFLPVGGTKEVSVDVRVIAATNRDLAEFVREGRFREDLYYRLSVFELYIPPL 480 Query: 371 RDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQL 430 R+ DI L + FV F + G P L+ D L Y WPGNVRQL+N I A+ Sbjct: 481 RERGSDIRKLIDFFVDHFRRQHGRPSLTLSVDAREKLEGYQWPGNVRQLRNVIDSAVVMC 540 Query: 431 DGYELRPQDILLPDYDAATVAVGEDAMEGSL--DEITSRFERSVLTQLYRNYPSTRKLAK 488 +G + P D+ L D VG A SL D R + L + N P KL Sbjct: 541 EGSIILPDDLGLRD-------VGNAAELESLRMDYWERRLIQEALKRTSGNVPEAAKL-- 591 Query: 489 RLGVSHTAIANKLREYGLSQK 509 LG+ + K+ EYG+ +K Sbjct: 592 -LGLGRATLYRKIEEYGIERK 611 >UniRef50_B1KVR7 Sigma-54 dependent transcriptional regulator n=11 Tax=Clostridium RepID=B1KVR7_CLOBM Length = 470 Score = 217 bits (553), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 143/451 (31%), Positives = 228/451 (50%), Gaps = 38/451 (8%) Query: 80 LALSALLEALP---EPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLR 136 L++S L A E ++ +D + N + D+L+ ++ +I + F+ Sbjct: 23 LSISVLQTAFNVAYEGLILIDENYNILKINTMGLNILNSTEDKLKKYSIKDIIRNYKFID 82 Query: 137 -WLESEPQD-SHNEHVVINGQNF--LMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQL 192 L++ S + +IN + + I PV LQD + GA++ +R T + + + Sbjct: 83 DCLQNGIHKLSIDSSFLINNNSIRCITNIMPVKLQDS-----IIGAIISIRDTRHIHKLV 137 Query: 193 QNVAAQDVS-AFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQAS 251 NV S F I+ + KMK ++E A+K + +LI G++GTGK+LFA A H S Sbjct: 138 NNVVGYKASYTFDDIITKNQKMKSIIELAKKASESDCSILIDGNSGTGKELFAQAIHNHS 197 Query: 252 PRAGKPYLALNCASIPEDAVESELFGH--------APEGKKGFFEQANGGSVLLDEIGEM 303 R P++A+NCA+IP + VESELFG+ + G G FE A+GG++ LDEIGE+ Sbjct: 198 NRCHGPFVAVNCAAIPRELVESELFGYEKGAFTGASKGGYPGKFELADGGTIFLDEIGEL 257 Query: 304 SPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVL 363 +Q+KLLR L++ RVG HE +D+RV+ AT +NL E V FR DLYYRLNV+ Sbjct: 258 PLDIQSKLLRVLDNLKIMRVGGTHEKKIDIRVLAATNRNLSEEVSNKNFRGDLYYRLNVI 317 Query: 364 TLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAI 423 ++L PL+D +D+ LT FV + + K+A + L Y WPGNVR+L+N + Sbjct: 318 NVHLIPLKDRVEDVEALTNCFVDKLNIKNPGNFKKIAPEFMDKLKAYHWPGNVRELRNIV 377 Query: 424 YRALTQLDGYELRPQDILLPDY--------DAATVAVGEDAMEGSLDEITSRFERSVLTQ 475 R+ Y + +I+ + + +G++ LD + + L Sbjct: 378 ERS------YYICEDNIITDKFLNNKLMKNEHHNCCIGKEEPIVPLDILEHKAIEKALIH 431 Query: 476 LYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 N +L LG+S I K+ +Y + Sbjct: 432 CKGNIVQASEL---LGISRATIYRKINKYNI 459 >UniRef50_B5YI45 Transcriptional activator n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YI45_THEYD Length = 424 Score = 217 bits (553), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 124/326 (38%), Positives = 192/326 (58%), Gaps = 22/326 (6%) Query: 192 LQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQAS 251 L+++ ++ + +IVA S +M+ ++E +++A +L+TG++G GK++ A H+ S Sbjct: 109 LKSLVSRLIPEQDEIVAESREMRRILEIVKEIARTDITVLLTGESGVGKEVIARYIHKHS 168 Query: 252 PRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMS 304 PR+ +P++A+NCA+I E +E+ELFGH A E K G FE AN G++LLDEI EM+ Sbjct: 169 PRSNQPFVAINCAAITETLLEAELFGHEKGAFTGATERKPGKFELANKGTILLDEISEMA 228 Query: 305 PRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLT 364 R+QAKLLR + + RVG + +DVR+I T K+L E V+KG FREDL+YR+NV Sbjct: 229 YRLQAKLLRVIQEKEIDRVGGTKPIPIDVRIIATTNKDLAEEVKKGNFREDLFYRINVFP 288 Query: 365 LNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIY 424 + +PPLR+ DI+PL E F+ R +++ + D+ L + +W GNVR+L+N IY Sbjct: 289 IRIPPLRERSDDIIPLAEFFLKRLSNKMS-KNFTITEDMKKFLLKKSWQGNVRELENFIY 347 Query: 425 RA--LTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPS 482 R+ L+Q L +I L + + A G L + ER ++ + Sbjct: 348 RSAVLSQDGILRLHEDEINLFEEEKPVKA-------GKLKDA----ERELIVDALKKTEG 396 Query: 483 TR-KLAKRLGVSHTAIANKLREYGLS 507 R K AK LG+S + NK+ EYGL Sbjct: 397 NRTKAAKILGISVRTLRNKINEYGLK 422 >UniRef50_C6HYM0 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Leptospirillum RepID=C6HYM0_9BACT Length = 508 Score = 217 bits (553), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 115/307 (37%), Positives = 178/307 (57%), Gaps = 15/307 (4%) Query: 210 SPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPED 269 SP++ +V + + + +L G+TG GK++FA CH+ R P++ +NC +IP D Sbjct: 200 SPEIVEIVRKVKMVGPSGLSILFLGETGVGKEMFARLCHEVGGRPAAPFIPVNCGAIPHD 259 Query: 270 AVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRR 322 ES FGH A G+ E A+ G++ LDEIGE+SP +Q KLLR L + TF R Sbjct: 260 LAESLFFGHEKGSFSGAVNQATGYLEAADKGTLFLDEIGELSPPLQVKLLRVLQERTFTR 319 Query: 323 VGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTE 382 VG E+ + RV+CAT +NL E V+KG FREDL+YR+N LT+ +PPLR+ DI+P+ + Sbjct: 320 VGSTRELPFEARVVCATNRNLAEEVRKGTFREDLFYRINGLTIEIPPLRNRLSDILPMAD 379 Query: 383 LFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILL 442 F+ + + +P + + L Y+WPGN R+L N IYRA DG E+R +D+ L Sbjct: 380 YFLRKICLDNSLPPKTIGREAALALQGYSWPGNARELHNVIYRAAIISDGTEIREEDVGL 439 Query: 443 PDYDAATVAVGEDAMEGSLDEITSRFERSVLTQ-LYRNYPSTRKLAKRLGVSHTAIANKL 501 P D + A + +L EI FE+ VL + L R+ + +++ L +S + + Sbjct: 440 P-IDKSRQA------KPTLKEIREIFEKEVLLESLVRHNGNVAAVSEELDISKPTVYAFI 492 Query: 502 REYGLSQ 508 +++ LS+ Sbjct: 493 KKHNLSR 499 >UniRef50_A1HS80 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HS80_9FIRM Length = 648 Score = 217 bits (553), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 131/398 (32%), Positives = 214/398 (53%), Gaps = 40/398 (10%) Query: 49 ESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPA 108 E+ + E +RI V D ++ L +L + + V+++D K+ + NP+ Sbjct: 175 EAVCEAIEEAQRIIKVQD-------KEKKSAEQLRTILSFIHDGVIAIDNTGKITVINPS 227 Query: 109 SCQLFGQKLDRLRNHTAAQLINGFNFLRWLE------SEPQDSHNEHVVINGQNFLMEIT 162 + +F K ++ Q+I L L+ + Q++ + VV N Sbjct: 228 AESIFKLKNTQVIGKNIKQVIPNTKMLDVLKHGKAEIEQLQNTPSGMVVTNR-------V 280 Query: 163 PVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVS-------AFSQIVAVSPKMKH 215 P+ + E + G V + R+ + Q + + S +F I+A P+M+ Sbjct: 281 PIEINGE-----IMGVVATFKEAGRIQQTEQKIRTKLYSQGLYAKYSFENIMAWDPEMRR 335 Query: 216 VVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESEL 275 ++E+A++ A +LI ++G GK+LFA + HQAS R P++A+NC+++P +ESEL Sbjct: 336 IIERAKRYARTDGTVLIEAESGCGKELFAQSIHQASSRCRGPFVAINCSALPTQLLESEL 395 Query: 276 FGHA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDH 327 FG+ EGK G E A+GG++ LDEIG+M +QA+LLR L + R+G D Sbjct: 396 FGYVEGAFTGARKEGKPGLIELAHGGTLFLDEIGDMELTLQARLLRVLEERQVMRLGADK 455 Query: 328 EVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVAR 387 + VD+R++ AT L + V +G FR DL++RLNVL L++PPLR +DI+PL E F+A Sbjct: 456 WLPVDIRIVAATNAPLKQRVLRGQFRMDLFHRLNVLNLSIPPLRHRREDIIPLAEYFLAE 515 Query: 388 FADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYR 425 FA++ G +L A +L RY+WPGNVR+L+N + R Sbjct: 516 FANKYGQRPIELTAAAKDILLRYSWPGNVRELRNIMER 553 >UniRef50_Q3ACI2 Sigma-54-dependent transcriptional regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ACI2_CARHZ Length = 589 Score = 217 bits (552), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 121/333 (36%), Positives = 189/333 (56%), Gaps = 25/333 (7%) Query: 196 AAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAG 255 A QD F + SP MK V+ +A ++A +LI G++GTGK++ A H S R Sbjct: 253 AQQDFKGF---IIKSPLMKDVIYKALRVARTDTTVLIIGESGTGKEVIARFIHFNSLRKD 309 Query: 256 KPYLALNCASIPEDAVESELFGHAP--------EGKKGFFEQANGGSVLLDEIGEMSPRM 307 K +L +NC +IPE+ +ESE FG+ P GK GFFE A GG++ LDE+GE+ + Sbjct: 310 KAFLPVNCGAIPENLMESEFFGYEPGAFTGALKTGKMGFFELAQGGTLFLDEVGELPLHL 369 Query: 308 QAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNL 367 Q KLLR L R+G + VDVR+I AT +NL +LV++G FREDLYYRLNV+++ + Sbjct: 370 QVKLLRALQTKEIMRLGSTKPIKVDVRIIAATNRNLAKLVEEGKFREDLYYRLNVISIEI 429 Query: 368 PPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRAL 427 PPLR ++I+P+ F+ R ++ G + K ++ +L Y WPGN+R+L+N I A Sbjct: 430 PPLRKRKEEIIPMAMEFLTRINEKYGSEK-KFTREVLEILKEYKWPGNIRELENVIEHAY 488 Query: 428 TQLDGYELRPQDILLPDY------DAATVAVGEDAMEG----SLDEITSRFERSVLTQLY 477 + E+ +D LP + + +A+ ++ +LDE S E+ ++ Sbjct: 489 V-VSQDEINVED--LPIHLDSLYGEPGNIALIRKTLQNRENITLDEAISLVEKKLIEDAL 545 Query: 478 RNYPSTRKLAKRLGVSHTAIANKLREYGLSQKK 510 Y + + A LGV+ + I+ K+++Y + KK Sbjct: 546 LKYGTETRAASVLGVNQSTISRKIKKYNIDVKK 578 >UniRef50_B3Q676 Transcriptional regulator, NifA subfamily, Fis Family n=9 Tax=Bacteria RepID=B3Q676_RHOPT Length = 561 Score = 217 bits (552), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 123/319 (38%), Positives = 181/319 (56%), Gaps = 21/319 (6%) Query: 204 SQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNC 263 + I+ S M+ V K+A A +L+ G++G GK+L A A H SP A P++ NC Sbjct: 240 ANIIGNSKPMQEVYAMVHKVASTKATVLLLGESGVGKELVASALHYNSPVADGPFIKANC 299 Query: 264 ASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLN 316 A++PE ESELFGH A KG+FEQA+GG++ LDE+GE+S QAKLLR L Sbjct: 300 AALPEALAESELFGHERGAFTSAIATHKGYFEQASGGTIFLDEVGELSLPTQAKLLRVLQ 359 Query: 317 DGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQD 376 + TF RVG V VDVR+I AT +NL E+V +G FREDL+YRLNV + +PPLRD D Sbjct: 360 ERTFERVGGAKPVKVDVRIIAATNRNLAEMVAEGTFREDLFYRLNVFPITIPPLRDRGSD 419 Query: 377 IMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALT-----QLD 431 ++ L + FV ++ E G P +++ +L Y WPGNVR+L+N I R++ + Sbjct: 420 VITLADHFVTTYSAEIGKPIKRISTPAINMLMSYHWPGNVRELENVIERSVILAEEGVIH 479 Query: 432 GYELRPQDILLPDYDAATVAVGEDAMEGSL-DEITSRFERSVLTQLYRNYPSTRKLAKRL 490 GY+L P L + T G+L D +T+ ++ L + + + A L Sbjct: 480 GYDLPPS--LQTPTETGT------GFSGTLEDRVTAVEYEMIVEALKASNGNVGQAATTL 531 Query: 491 GVSHTAIANKLREYGLSQK 509 G++ + ++ +GL+ K Sbjct: 532 GLTRRMLGLRMERHGLTYK 550 >UniRef50_B3E5G9 Sigma54 specific transcriptional regulator, Fis family n=9 Tax=Proteobacteria RepID=B3E5G9_GEOLS Length = 568 Score = 217 bits (552), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 118/307 (38%), Positives = 181/307 (58%), Gaps = 13/307 (4%) Query: 206 IVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCAS 265 +++ S MK+VV+ A ++A + + +L+TG++G+GK+L A H SPRA +P++A+NC + Sbjct: 236 VMSRSRAMKNVVDMAWRVAKVDSSVLVTGESGSGKELMARFIHDQSPRAAQPFIAVNCGA 295 Query: 266 IPEDAVESELFGHAP-------EGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDG 318 + E +ESELFGHA + G FE A GG++ LDEIGE+SP MQ KLLR L + Sbjct: 296 LTETLLESELFGHAKGSFTGADRDRPGLFEAAAGGTLFLDEIGEVSPAMQVKLLRALQER 355 Query: 319 TFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIM 378 RRVGE+ +DVRV+ AT +NL + + +G FR+DLYYRL V+ L +PPLR+ +DI+ Sbjct: 356 EVRRVGENKSRKIDVRVVTATNRNLADEIAQGRFRQDLYYRLRVIELQVPPLRERNEDIL 415 Query: 379 PLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQ 438 PLT +F+A+ + + + RY+WPGNVR+L+NA+ A+ G ++ Sbjct: 416 PLTRMFLAKLVKQMKLQITGFTSKAAAQFLRYSWPGNVRELQNAVEYAVAMCQGAQIDVD 475 Query: 439 DILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKL-AKRLGVSHTAI 497 D+ + V D + L+EI ER + + R + L A L + + Sbjct: 476 DLPCDLRALSLRPVVSDCIR-PLEEI----ERDYIIGVLRALGGNKVLAASELNIGLATL 530 Query: 498 ANKLREY 504 KL+EY Sbjct: 531 YRKLKEY 537 >UniRef50_B8FIT8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FIT8_DESAA Length = 588 Score = 217 bits (552), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 152/468 (32%), Positives = 236/468 (50%), Gaps = 45/468 (9%) Query: 64 VTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNH 123 VTD R M + L A+ ++ + +++VD KV AN A+ L G ++N+ Sbjct: 134 VTDRRKAE-MELAKHKTRLEAIFRSVKDAIVTVDQDLKVIDANKAAATLCGIAAKNVKNN 192 Query: 124 ---------------TAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQD 168 A+ + +R + E Q + P+ QD Sbjct: 193 PFALCPTDCCQACRDVLAETLKRKTAIREFQVECNHKQRPQ-----QKVSLSSAPLESQD 247 Query: 169 ENDQHVLTGAVVMLRSTIRM---GRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAM 225 GAV+++R R+ R+LQ + + F I+ S KM+ V + + LA Sbjct: 248 GE----FLGAVLVIRDITRLVDLERELQ-----ERNQFHNIIGASHKMQAVYQLLENLAD 298 Query: 226 LSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH------- 278 +LITG++GTGK+L A A H RA KP++++NC+++ E+ +ESELFGH Sbjct: 299 FETTVLITGESGTGKELVAKALHHTGSRAFKPFVSVNCSALAENLLESELFGHVKGAFTG 358 Query: 279 APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICA 338 A +G F+ A+ G++LLDEIG++SPR+Q KLLR L + F RVG+ + VDVRVI Sbjct: 359 AIRDYQGRFQAAHTGTLLLDEIGDISPRIQLKLLRVLQEREFERVGDVQPIKVDVRVIAC 418 Query: 339 TQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPK 398 T ++L E V G FREDLYYRLNV+ + LPPLR+ +DI L + F ARF + + P Sbjct: 419 TNQDLKEKVGLGEFREDLYYRLNVMEIKLPPLRERREDIPLLADHFTARFEKKFNITIPG 478 Query: 399 LAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAME 458 ++ + Y WPGNVR+L+++I RA + + I +A +++ + Sbjct: 479 VSDKVMNAFMNYHWPGNVRELEHSIERATVLCRDKMISLEHIPGEIAEAYSLSGPRLKKQ 538 Query: 459 GSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 + DE ++ L R + K A+ LGVS I K+ +YG+ Sbjct: 539 PAADE-----PNEIIDALKRTGWNKAKAARLLGVSRKTIYRKIEKYGI 581 >UniRef50_B3E4E8 Putative sigma54 specific transcriptional regulator n=1 Tax=Geobacter lovleyi SZ RepID=B3E4E8_GEOLS Length = 408 Score = 217 bits (552), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 120/313 (38%), Positives = 185/313 (59%), Gaps = 17/313 (5%) Query: 203 FSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALN 262 FS I+ SP+++ ++ +A+++A ++ITG+TGTGK+LFA A H SPR+ KP++A+N Sbjct: 103 FSSILGTSPQIRELIGKAERIADSRLSVIITGETGTGKELFAKAIHFNSPRSAKPFVAVN 162 Query: 263 CASIPEDAVESELFG------HAPEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLN 316 C++IPE ESE+FG E + G +QA GG++ LDE+GEM ++QAKLLR L Sbjct: 163 CSAIPETIFESEMFGIEKGVATGVEARIGKIQQAQGGTLFLDEVGEMPLQLQAKLLRVLE 222 Query: 317 DGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQD 376 + T RVG + VD+R+I AT ++L + + KG FREDLYYRLN +TL +PPLR+ D Sbjct: 223 ERTLERVGSRTAIPVDLRIIAATNRDLTKEIAKGSFREDLYYRLNGVTLRIPPLRERKGD 282 Query: 377 IMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELR 436 I + F+ ++ G P ++A + L Y WPGNVR+L N I RA+ G + Sbjct: 283 IDLIARQFLEKWGRSCGRPPMRIAKEALERLRGYTWPGNVRELDNEIERAVALAYGDTIT 342 Query: 437 PQDILLPDYDAATV--AVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTR-KLAKRLGVS 493 D+ P T+ A G+ ++ S E+ ++ Q + + + A+RLG+S Sbjct: 343 MTDLSDPLQQQTTLPAAGGKSLLKDS--------EKQLIEQALKEAKGNKTQAAERLGMS 394 Query: 494 HTAIANKLREYGL 506 + KL+ G+ Sbjct: 395 REGLRKKLKRLGM 407 >UniRef50_Q0SR73 Sigma-54 dependent transcriptional regulator n=1 Tax=Clostridium perfringens SM101 RepID=Q0SR73_CLOPS Length = 455 Score = 216 bits (551), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 134/448 (29%), Positives = 231/448 (51%), Gaps = 27/448 (6%) Query: 82 LSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESE 141 L L +P ++ + ++K+D N + K + N N L S Sbjct: 11 LENLTNHIPLGLIFISPENKIDFINKKAESFLNSKSKSVENIDIFSFFPQLNELINNSSS 70 Query: 142 PQDSHNEHVV--INGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQD 199 +++ + +V ++G + ++I P+ ND + G +++L+ + + + Q+ Sbjct: 71 KKNNQKDALVTSLDGNKYNLDICPI-----NDGDIFVGWLLILKDLKEIISTVNKYSNQE 125 Query: 200 VS-AFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPY 258 + F I+ SP++K V+ A+ ++ + +LITG++G GK+L A + H AS + P+ Sbjct: 126 AAYTFDDIIGESPQLKKVLRDAELISKSPSTVLITGESGCGKELLAQSIHNASNVSNGPF 185 Query: 259 LALNCASIPEDAVESELFGHAPE--------GKKGFFEQANGGSVLLDEIGEMSPRMQAK 310 +ALNC +IP+ +ESELFG+ GK G FE A+GG++ LDEI EM MQ Sbjct: 186 IALNCGAIPKTLIESELFGYEEASFTGSRKGGKPGKFELADGGTIFLDEICEMPIEMQVT 245 Query: 311 LLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPL 370 LLR + +G R+G ++ ++VR+I AT KNL E ++KG FREDLYYRLNV+ L+LPPL Sbjct: 246 LLRVIQEGVVTRIGGKTQIPINVRIIAATNKNLKEEIKKGTFREDLYYRLNVMPLHLPPL 305 Query: 371 RDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQL 430 +D D+ L F+ + + P + L + Y WPGN+R+L+N + + L Sbjct: 306 KDRLGDVPILINYFLNIKSQKLHKGIPNINQKLYKKMISYCWPGNIRELENCV-ENIVNL 364 Query: 431 DG---YELR-------PQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNY 480 +G YE+ D L + ++ + E E S+ + + ++ L Sbjct: 365 NGSTSYEINFDECHCLKTDNLGNPINPNSLDLPESYNENSIKPLIILEKEAIEKALCTFD 424 Query: 481 PSTRKLAKRLGVSHTAIANKLREYGLSQ 508 + K + LG+S A+ NK++ YG+++ Sbjct: 425 GNITKASNALGISRNALYNKIKRYGINK 452 >UniRef50_B6WRE4 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WRE4_9DELT Length = 521 Score = 216 bits (551), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 137/375 (36%), Positives = 207/375 (55%), Gaps = 38/375 (10%) Query: 169 ENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQ----------------IVAVSPK 212 E D+ +LT M+ R QNV + V+A + V S Sbjct: 146 EEDERILTIIASMIAHA---ARARQNVMDERVAAIEENMRLRNALSAPLRPHGFVGNSDA 202 Query: 213 MKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVE 272 M+ V EQ ++A S +L+ G++GTGK+L A+A H A R+ P+++LNCA++PE+ +E Sbjct: 203 MRLVYEQISQVAPSSTTVLLYGESGTGKELAAHAIHSAGKRSKGPFISLNCAALPENLIE 262 Query: 273 SELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGE 325 SELFGH A +KG FE A+GG++ LDE+GE+S QAKLLR L + F R+G Sbjct: 263 SELFGHEKGAFTGASGIRKGRFELADGGTLFLDEVGELSLLTQAKLLRVLQERCFERLGG 322 Query: 326 DHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFV 385 + VDVR+I AT ++L +V++G FR DLYYRLNV +++PPLR+ DI PL FV Sbjct: 323 TESLSVDVRIITATNRDLARMVEEGTFRRDLYYRLNVFPIHMPPLRERQNDIQPLAAYFV 382 Query: 386 ARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRA--LTQLDGYELRPQDI--- 440 ++A G +++ + +L RY WPGN+R+L+N + RA L DG L PQ + Sbjct: 383 DKYAAANGRSGIRISLAVMDMLQRYTWPGNIRELENVMERAVLLVGQDGLIL-PQHLPRE 441 Query: 441 ----LLPDYDAATVA-VGEDAMEGSLDEITSRFERSVLTQ-LYRNYPSTRKLAKRLGVSH 494 P AA V A G+L + ER+ +T L R+ A+ LG++ Sbjct: 442 LHSTHCPFGPAAHKGPVEPYAASGTLQDRLDELERACITDALARHKGHMGHAAQALGLTE 501 Query: 495 TAIANKLREYGLSQK 509 +A +++++G++ K Sbjct: 502 RVMALRMKKHGINYK 516 >UniRef50_D0LHM6 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LHM6_HALO1 Length = 493 Score = 216 bits (551), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 128/333 (38%), Positives = 184/333 (55%), Gaps = 32/333 (9%) Query: 206 IVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCAS 265 +V S +K V K+A A +LITG++GTGK+L A A H AS R GK ++A+NC + Sbjct: 161 MVGASAAIKDVFATIDKVARHKAAVLITGESGTGKELVARAIHDASQRKGKNFVAINCGA 220 Query: 266 IPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDG 318 IP + +ESELFG+ A K G FE A+GG++ LDEIGE+ +Q KLLR L + Sbjct: 221 IPANLLESELFGYRRGAFTDAVRDKTGLFEVADGGTLFLDEIGELPLNLQVKLLRVLQEE 280 Query: 319 TFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIM 378 RR+G++ +DVR++ AT +NL E + G FREDL+YRLNVL + LP LR+ DI Sbjct: 281 EIRRIGDNRTTKIDVRIVAATLRNLGEDAENGRFREDLFYRLNVLNIVLPALRERRADIA 340 Query: 379 PLTELFVARFADEQGVPRPK---LAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYEL 435 PL E FVA + +P+ ++ +L YAWPGN+R+L+N I RA+ DG + Sbjct: 341 PLAEHFVAAYRKRHKSSQPRAEGISEAAMGLLEAYAWPGNIRELENTIERAMVLADGPLI 400 Query: 436 RPQ---------------------DILLPDYDAATVAVGEDAMEGSLDEITSRF-ERSVL 473 P D D +VA+ D + S+ + T F ER V Sbjct: 401 EPHLLDAKIAQFAPAGAAQTAPAASASASDEDLRSVAIALDGDDLSIKKHTRLFEERLVR 460 Query: 474 TQLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 L + + +K LG+S+ A+ K++EYG+ Sbjct: 461 IALGKTDGNRHNASKLLGISYRALLYKIKEYGI 493 >UniRef50_A3ERY0 Putative two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Leptospirillum sp. Group II RepID=A3ERY0_9BACT Length = 471 Score = 216 bits (551), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 121/330 (36%), Positives = 192/330 (58%), Gaps = 18/330 (5%) Query: 196 AAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAG 255 +A++ + F IV +P MK ++ QK++ +LITG++GTGK+LFA A H+ SPR Sbjct: 148 SAEESNPFPGIVTKNPGMKEMLRILQKISATDVSVLITGESGTGKELFARAIHERSPRKN 207 Query: 256 KPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQ 308 P++A+NC +IPE +ESELFGH A E + G FE A+ G++ LDE+ E+ +Q Sbjct: 208 GPFVAINCGAIPESLLESELFGHEKGAFTGATESRAGKFEAAHHGTLFLDEVAELQIELQ 267 Query: 309 AKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLP 368 KLLR L D RVG + +DVR+I AT + L EL+ +G FREDLYYRL+V++ +LP Sbjct: 268 VKLLRVLQDKIVERVGSRNGKQLDVRIIAATNQPLNELMARGRFREDLYYRLSVMSFHLP 327 Query: 369 PLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLN----TVLTRYAWPGNVRQLKNAIY 424 PLRD +D++ L + F+ +F E P+ D N V+ ++ WPGN+R+L+N I Sbjct: 328 PLRDRGEDVLLLAQHFLEKFRTEYNKPQ---VIDFNRECLDVIRKHDWPGNIRELENRIQ 384 Query: 425 RALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRN-YPST 483 RA+ G + +D+ D + GE + +L E+ +L + + + Sbjct: 385 RAVIIASGKWVTREDL---DIGLDSRKHGESTLSMNLTGAREEAEKRMLVEAFEQARGNI 441 Query: 484 RKLAKRLGVSHTAIANKLREYGLSQKKNEE 513 +A+ +G S + ++++GLS K+ +E Sbjct: 442 SHVARMIGTSRPTVHALIKKHGLSPKEFKE 471 >UniRef50_B5ZJF6 Transcriptional regulator, NifA, Fis Family n=4 Tax=Gluconacetobacter diazotrophicus RepID=B5ZJF6_GLUDA Length = 581 Score = 216 bits (551), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 118/249 (47%), Positives = 157/249 (63%), Gaps = 8/249 (3%) Query: 199 DVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPY 258 D + IV SP ++ V+++ + +A +L+ G++GTGK+LFA A HQASPR KP+ Sbjct: 209 DGGGYMGIVGDSPALRAVLQKVEIVARSDVTVLLRGESGTGKELFAQAIHQASPRHRKPF 268 Query: 259 LALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKL 311 + LNCA++PE +ESELFGH A +KG FE A+GG++ +DEIGE+SP QAKL Sbjct: 269 VKLNCAALPESVLESELFGHEKGAFTGAIGQRKGRFELADGGTLFMDEIGEISPSFQAKL 328 Query: 312 LRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLR 371 LR L +G F RVG + VDVRV+ AT +NL E V KG FR DLYYRL+V+ + LPPLR Sbjct: 329 LRVLQEGEFERVGGTRTLKVDVRVVTATNRNLEEAVSKGRFRADLYYRLSVIPIFLPPLR 388 Query: 372 DCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLD 431 D P DI L F+ RF +E +A+D VLT +PGNVR+L+N I R T Sbjct: 389 DRPTDIPMLANEFLRRF-NETNRTSLTIASDGMDVLTTCYFPGNVRELENCIRRTATLAP 447 Query: 432 GYELRPQDI 440 G + D Sbjct: 448 GQTIGAADF 456 >UniRef50_B4RA20 Sigma-54-dependent transcriptional regulator (Activator) protein n=13 Tax=Alphaproteobacteria RepID=B4RA20_PHEZH Length = 495 Score = 216 bits (551), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 135/376 (35%), Positives = 193/376 (51%), Gaps = 52/376 (13%) Query: 179 VVMLRSTIRMGRQLQNV-----AAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLIT 233 +V +R+ + MG V A + F ++ SP M V ++ A S P+LIT Sbjct: 112 IVSIRNALSMGALKGEVDRLKKHASGRTTFDDLIGASPAMVMVKRLGERAARSSIPILIT 171 Query: 234 GDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGF 286 G++G GK++ A A H +S RAGKP++A+NC +IPE+ VES LFGH A + G Sbjct: 172 GESGVGKEVIARAVHGSSDRAGKPFVAVNCGAIPENLVESILFGHEKGSFTGATDKHLGK 231 Query: 287 FEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVEL 346 F++ANGG++ LDE+GE+ MQ KLLR L + +G V VDVR++ AT ++L + Sbjct: 232 FQEANGGTLFLDEVGELPLDMQVKLLRALQESEIDPIGSKRSVKVDVRIVSATNRDLSQA 291 Query: 347 VQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTV 406 V +G FREDLYYRLNV + P LR+ +DI L + F+ RF E+G A + Sbjct: 292 VAEGRFREDLYYRLNVFPIEAPSLRERKEDIPALVDAFIRRFNVEEGKAVVGAAPETLAC 351 Query: 407 LTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDI------------------LLPDYDAA 448 LT + WPGNVRQL+NA+YRA+ D L+P D + Sbjct: 352 LTGFDWPGNVRQLENAVYRAIVLADAPYLQPHDFPAISGIAAPPPEALAPKAVTASAPGP 411 Query: 449 TVAVGEDAME-----------------GSLDEITSRFERSVLTQLYRNYPS-TRKLAKRL 490 + GE A E LDEI ER ++ Y ++A+RL Sbjct: 412 VPSAGELAAELPQPQAPVPILDARGHIRPLDEI----ERDLIQHAIEVYSGHMSEVARRL 467 Query: 491 GVSHTAIANKLREYGL 506 G+ + + K+RE GL Sbjct: 468 GIGRSTLYRKVRENGL 483 >UniRef50_C0Q9L2 Sigma-54 dependent transcriptional regulator n=4 Tax=Deltaproteobacteria RepID=C0Q9L2_DESAH Length = 503 Score = 216 bits (550), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 109/235 (46%), Positives = 155/235 (65%), Gaps = 11/235 (4%) Query: 203 FSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALN 262 FSQI+ SP M+ V+ +AQ +A+ S P+LI G++GTGK+LFA A H ASPR KP++ +N Sbjct: 181 FSQIIHKSPIMQRVIAKAQHVAVRSVPVLIEGESGTGKELFARAIHNASPRKDKPFITVN 240 Query: 263 CASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFL 315 C +IP D VES+LFGH A + +KG+FE+A+ GS+ LDEIGE+ Q KLLR L Sbjct: 241 CGAIPADLVESQLFGHVKGAFTGAEKAQKGYFEEADKGSLFLDEIGELPLLSQVKLLRTL 300 Query: 316 NDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQ 375 +G RVG V +DVR+I AT ++L++ + +G FR DL+YRL V L +PPLR+ Sbjct: 301 QEGEVVRVGTATPVKIDVRIIAATNRSLIDEIHEGRFRSDLFYRLAVAILKIPPLRERSG 360 Query: 376 DIMPLTELFVARF----ADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRA 426 D+ L + FVA+ +E G K++ D ++ +++WPGNVR+L N I RA Sbjct: 361 DLSFLVDHFVAQVNTDSKNEPGYKDKKISPDAKNLMFQHSWPGNVRELLNTIQRA 415 >UniRef50_P09133 Nif-specific regulatory protein n=18 Tax=Rhizobiales RepID=NIFA_AZOC5 Length = 615 Score = 216 bits (550), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 116/242 (47%), Positives = 158/242 (65%), Gaps = 8/242 (3%) Query: 206 IVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCAS 265 IV SP +K ++ AQ +A ++ +L+ G++GTGK+LFA A H+ SPR GKP++ +NCA+ Sbjct: 256 IVGDSPLVKRLIATAQVVARSNSTVLLRGESGTGKELFARAIHELSPRKGKPFVKVNCAA 315 Query: 266 IPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDG 318 +PE +ESELFGH A ++G FE A+GG++ LDEIGE++P QAKLLR L +G Sbjct: 316 LPESVLESELFGHEKGAFTGALNMRQGRFELAHGGTLFLDEIGEITPAFQAKLLRVLQEG 375 Query: 319 TFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIM 378 F RVG + + VDVR++CAT KNL E V KG FR DLYYR++V+ L LPPLR+ P DI Sbjct: 376 EFERVGGNRTLKVDVRLVCATNKNLEEAVSKGEFRADLYYRIHVVPLILPPLRERPGDIP 435 Query: 379 PLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQ 438 L + F+ RF E + L+A VL R +PGNVR+L+N I R T + P Sbjct: 436 KLAKNFLDRFNKENKL-HMMLSAPAIDVLRRCYFPGNVRELENCIRRTATLAHDAVITPH 494 Query: 439 DI 440 D Sbjct: 495 DF 496 >UniRef50_B8JEK1 Sensor protein n=14 Tax=cellular organisms RepID=B8JEK1_ANAD2 Length = 1079 Score = 216 bits (550), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 131/346 (37%), Positives = 193/346 (55%), Gaps = 32/346 (9%) Query: 183 RSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDL 242 R +R+ +L+ A F +IV +P M+ V +++A A +L+ G+TGTGK+L Sbjct: 742 RDVLRLRGELERAAG-----FEEIVGTAPAMREVFAMVEQVAPADATVLLRGETGTGKEL 796 Query: 243 FAYACHQASPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSV 295 A A H+ SPR +P++A+NC +IP+D +ESE FGH A + G FEQA+G ++ Sbjct: 797 VARAIHRRSPRRDRPFVAVNCTAIPKDLMESEFFGHEKGAFTGAVARRVGRFEQADGSTL 856 Query: 296 LLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFRED 355 LDE+G++ +QAKLLR L + RVG + VDVR++ AT ++L LV +G FR+D Sbjct: 857 FLDEVGDLDLAIQAKLLRVLQEQEITRVGARDPLKVDVRIVAATNRDLEALVHEGRFRDD 916 Query: 356 LYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGN 415 L+YRLNV+ L LPPLR+ PQD+ L E F+ FA G P DL Y WPGN Sbjct: 917 LFYRLNVIPLRLPPLRERPQDLPALLEHFLRSFAQRYGRTSPVPPPDLLAAARAYPWPGN 976 Query: 416 VRQLKNAIYRALTQLDGYELRPQDILLPDYDA-ATVAVGEDAMEG-----------SLDE 463 VR+L+N RA+ L G+ + P + A A V DA G + Sbjct: 977 VRELRNLCERAV--LMGWA-----AVAPIFGAGAGVTPRPDAGAGVPVDTSLPLLEARQR 1029 Query: 464 ITSRFERSVLTQLYRNYPS-TRKLAKRLGVSHTAIANKLREYGLSQ 508 + RFER LT+L + ++A+ G++ + K++ YGLS+ Sbjct: 1030 LVERFEREYLTRLLKERRGRIGEVARAAGIAERNLYEKMKAYGLSR 1075 >UniRef50_B4ULZ7 Transcriptional regulator, NifA, Fis Family n=2 Tax=Anaeromyxobacter RepID=B4ULZ7_ANASK Length = 535 Score = 216 bits (550), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 124/288 (43%), Positives = 175/288 (60%), Gaps = 19/288 (6%) Query: 170 NDQHVLTGAVVMLRSTIRMGRQL---QNVAAQDVSA-------FSQIVAVSPKMKHVVEQ 219 D +LT ++ + +R+ QL Q AAQD+ F +V +M+ V+ Sbjct: 151 RDVRLLTAVAHLMGARVRL-MQLESPQRRAAQDLPPVAPELERFPGVVGHGQRMREVLRL 209 Query: 220 AQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH- 278 ++A A +L+ G++GTGK+LFA+A H+ASPRA +P++A+NCA++PE VESELFGH Sbjct: 210 VSRVARSRATVLLRGESGTGKELFAHALHEASPRAERPFVAVNCAALPEALVESELFGHE 269 Query: 279 ------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVD 332 A + G FEQA+GG++ LDE+GE+SP QAKLLR L + F R+G V VD Sbjct: 270 KGAFTGAAAARPGRFEQADGGTLFLDEVGELSPGAQAKLLRALQERQFERIGGRRTVTVD 329 Query: 333 VRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQ 392 VR++ AT ++L E+V+ G FR DLY+RL+V+TL LPPLRD P+D+ L + F+A A+E Sbjct: 330 VRLVAATNRDLEEMVRAGTFRLDLYHRLSVVTLELPPLRDRPEDLAALAQHFLAALAEEH 389 Query: 393 GVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDI 440 G P L + VL GN RQL+N + RAL G L D Sbjct: 390 GRP-ASLGPGVLEVLRACRLSGNARQLRNCLERALVSSTGDALGRDDF 436 >UniRef50_D0XNN9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Brevundimonas subvibrioides ATCC 15264 RepID=D0XNN9_9CAUL Length = 465 Score = 216 bits (550), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 123/322 (38%), Positives = 184/322 (57%), Gaps = 23/322 (7%) Query: 206 IVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCAS 265 +++ P M+ V++ A ++A A +LITG++G GK++ A H S RA +P++++NCA+ Sbjct: 120 LISADPSMQAVIKLADQVARSEASILITGESGVGKEVMARYLHTHSKRAERPFISVNCAA 179 Query: 266 IPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDG 318 IP++ +ESELFGH A + G FE+A+GG++LLDEI EM R+QAKLLR + + Sbjct: 180 IPDNLLESELFGHEKGAFTGAVARRIGKFEEADGGTLLLDEISEMDTRLQAKLLRAIQER 239 Query: 319 TFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIM 378 RVG V V++R+I + ++L + V +G FREDL YRLNV+ L LP LR+ P D+ Sbjct: 240 IIDRVGGTKPVPVNIRIIATSNRDLAKAVAEGTFREDLLYRLNVVNLRLPALRERPGDVA 299 Query: 379 PLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQ 438 L + FV ++A GVP L+ D L + WPGNVR+L+NA++RA+ G E+ + Sbjct: 300 VLADHFVKKYAAANGVPVRPLSLDARRALAAHRWPGNVRELENAMHRAVLLAVGPEIDAE 359 Query: 439 DILLPDYDAATVAVG---EDAMEGSLDEITSRFERSVLTQLYRNYPSTRKL--------- 486 I LPD AVG ++ + G + R+ + Q T L Sbjct: 360 AIRLPDGQPLMGAVGGAVDNGLAGRAAQTADAVSRAYVGQTVAQMEKTLILDTLTHCLGN 419 Query: 487 ----AKRLGVSHTAIANKLREY 504 A LG+S + NKL EY Sbjct: 420 RTHAANILGISIRTLRNKLNEY 441 >UniRef50_B9XM81 Sigma54 specific transcriptional regulator with PAS/PAC sensor, Fis family n=1 Tax=bacterium Ellin514 RepID=B9XM81_9BACT Length = 501 Score = 216 bits (550), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 112/232 (48%), Positives = 151/232 (65%), Gaps = 7/232 (3%) Query: 203 FSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALN 262 F I+A SP +K V++Q + +A A +LI G++GTGK+L A A H S R GKP + +N Sbjct: 177 FGAIIASSPALKKVLQQIEVVAPTQANVLILGESGTGKELVARAIHDLSERKGKPLVRVN 236 Query: 263 CASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFL 315 CASIP++ ESE FGH A + + G FE ANGGS+ LDEIGE+ +Q+KLLR L Sbjct: 237 CASIPKELFESEFFGHVRGAFTGAIKDRVGRFELANGGSLFLDEIGEIPLDLQSKLLRVL 296 Query: 316 NDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQ 375 +G F RVGED V+VR+I AT ++L+ + G FR DLYYRL+V + +P LR+ P+ Sbjct: 297 QEGQFERVGEDRTRTVNVRIIAATNRDLLTEAKAGRFRLDLYYRLSVFPIEIPALRERPE 356 Query: 376 DIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRAL 427 DI PL E FV + A+ GV RP+L L Y WPGNVR+L+N + RA+ Sbjct: 357 DIGPLAEHFVKQSANRLGVTRPRLTKADVRELEGYDWPGNVRELQNVVERAV 408 >UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC n=3 Tax=Bacteria RepID=B5YL21_THEYD Length = 446 Score = 216 bits (550), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 138/404 (34%), Positives = 214/404 (52%), Gaps = 34/404 (8%) Query: 129 INGFNFLRWLE----SEPQDSHNEHVVINGQNFLMEITPV-YLQDENDQHVLTGAVVMLR 183 ++G + LRWL+ S P + I M++ YL D +L + + Sbjct: 58 MDGIDLLRWLKHCEMSIPTVMLTAYGTIEKAVEAMKLGAYHYLIKPVDTELLLNVI---K 114 Query: 184 STIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLF 243 I + +Q + + + F +I+ S ++ + Q +A +A +LITG++GTGK+L Sbjct: 115 EAIEKSKGIQKLEKIE-TPFPEIIGKSKTIQEIFYIMQMVAESNANVLITGESGTGKELV 173 Query: 244 AYACHQASPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVL 296 A A H+ S R KP++ ++C +IPE+ +ESELFGH A E K G E AN G+V Sbjct: 174 ARAIHKNSLRKSKPFIIVDCTTIPENLLESELFGHEKGAFTGATERKTGLIELANEGTVF 233 Query: 297 LDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDL 356 LDEIGE+ +Q KLLRFL + +R+G + VDVRVI AT K+L + +++G FREDL Sbjct: 234 LDEIGELPMLLQKKLLRFLQEKEIQRIGSTQRIKVDVRVISATNKDLEKAIKEGSFREDL 293 Query: 357 YYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNV 416 Y+RLNV+ +NLPPLR+ +DI L F+ +F+ E P P+L ++ L Y WPGN+ Sbjct: 294 YWRLNVVRINLPPLRERKEDIPLLVNHFLNKFSKENNKPIPQLEPEVMNALINYYWPGNI 353 Query: 417 RQLKNAIYRALTQLDGYELRPQDIL----LP---DYDAATVAVGEDAMEGSLDEITSRFE 469 R+L N I RA+ L P ++ LP + + E+ +L E+ Sbjct: 354 RELANVIERAVV------LSPSGLISIKHLPRRIQENTGWTIIKENTF--NLLEVEKAL- 404 Query: 470 RSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKKNEE 513 +L L + K A+ LG+S + K++ +G + EE Sbjct: 405 --ILKALNSTGWNQTKAAEILGISRKQLRTKMKHHGFLTQSEEE 446 >UniRef50_C5DAI7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=4 Tax=Geobacillus RepID=C5DAI7_GEOSW Length = 569 Score = 216 bits (550), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 115/304 (37%), Positives = 176/304 (57%), Gaps = 18/304 (5%) Query: 205 QIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCA 264 QIV SP MK + ++ +++A +L+TG +G GK++ A H SPR KP++ +NC Sbjct: 258 QIVFRSPSMKQLFDKVEQIAPYPTTVLLTGPSGVGKEVIANLIHHLSPRKNKPFIKVNCG 317 Query: 265 SIPEDAVESELFGHAP--------EGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLN 316 +IPE +ESELFG+ +GK G E A+ G+++LDEIGEM +Q KLLR L Sbjct: 318 AIPEPLLESELFGYEKGAFTGARQDGKIGLLELADKGTIMLDEIGEMPLSLQVKLLRVLQ 377 Query: 317 DGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQD 376 + +R+G +DVR+I AT +NL EL+ +G FREDLYYRL V+ + +PPL + P+D Sbjct: 378 EKQVQRIGSHKTKKLDVRIIAATNQNLKELISQGKFREDLYYRLQVIEMYIPPLAERPED 437 Query: 377 IMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELR 436 I PL + + + + + + L+ +L RY WPGNVR+LKN + + + + Sbjct: 438 IEPLIDHYFSFYCKLYRINK-HLSPKTKEILQRYHWPGNVRELKNLMENMVVSVPSQLIE 496 Query: 437 PQDILLPDYD--AATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSH 494 P D+ L YD AAT + +L E +FER ++ + S RK A++LG+ H Sbjct: 497 PHDLPLHIYDQTAATSPL-------TLKERVEQFERRLIYEAIEKNTSLRKAAQQLGIDH 549 Query: 495 TAIA 498 + + Sbjct: 550 STLV 553 >UniRef50_Q9KBP6 Transcriptional regulator (Sigma-L-dependent) n=1 Tax=Bacillus halodurans RepID=Q9KBP6_BACHD Length = 555 Score = 216 bits (550), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 123/365 (33%), Positives = 204/365 (55%), Gaps = 30/365 (8%) Query: 155 QNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMK 214 + + ++I P Y+Q E V++ + L+ +Q +++ + +F I+ S + Sbjct: 201 EKWHVQIKPTYVQGE----VVSFMIKFLKKETNQFKQSKDL----LYSFQDIIGSSEAIH 252 Query: 215 HVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESE 274 E A+++A +L+ G++GTGK++FA A H+ S RA P++A+NCA+IP++ +ESE Sbjct: 253 FAREMARRIAGQDITILLRGESGTGKEMFAQAVHRESQRAQGPFVAINCAAIPDNLLESE 312 Query: 275 LFGHAP--------EGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGED 326 LFG+ +GK G FE A+GG++ LDEIG+MS +QAKLLR L + RVG Sbjct: 313 LFGYESGAFTGAQRQGKAGRFELAHGGTIFLDEIGDMSLHLQAKLLRVLQERKVERVGGT 372 Query: 327 HEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVA 386 V+VDVR+I AT +NL E+VQK FREDLYYRLNV+ + +PP+R+ +D+ L E F+ Sbjct: 373 QSVYVDVRIIAATHRNLEEMVQKKTFREDLYYRLNVIPITIPPVRERKEDLPILIEYFMK 432 Query: 387 RFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYD 446 R ++++ + D ++ RY WPGNVR++ N + + L D++ D Sbjct: 433 RLSNKEKKQPKYFSKDAYDLIFRYPWPGNVREIVNMVEHVIY------LETGDLITADSL 486 Query: 447 AATVAVGEDAMEGSLD-EITSRFERSVLTQLY-------RNYPSTRKLAKRLGVSHTAIA 498 A + + E L + E S Q+ R+ +++AK +G+S + Sbjct: 487 PAYLKIKEGKSTSQLQINVAPHGEESFKQQVLHLLDVYGRHTEGKKRIAKEMGISLPTLY 546 Query: 499 NKLRE 503 +L++ Sbjct: 547 RRLKK 551 >UniRef50_Q2LXQ0 Response regulator with sigma 54 interaction domain n=2 Tax=Deltaproteobacteria RepID=Q2LXQ0_SYNAS Length = 502 Score = 216 bits (550), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 103/253 (40%), Positives = 160/253 (63%), Gaps = 8/253 (3%) Query: 195 VAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRA 254 +A +++ + IV S K++ + + +K+A +LITG+TGTGK+L A+A H+ SPR Sbjct: 129 LAEEEIDKYG-IVGCSEKIREIYKTIEKVASTKTTILITGETGTGKELIAHAIHRGSPRK 187 Query: 255 GKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRM 307 Y+ +NC +I ++ +E+ELFG+ A K G FE A+ G++ LDEIGE+ M Sbjct: 188 DNAYIKINCGAIAKNLIEAELFGYEKGAFTGAASAKPGKFELADQGTIFLDEIGEIPRDM 247 Query: 308 QAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNL 367 Q KLL+ L D TF RVG + VDVR+I AT ++L++ +++G FREDLYYRLNV+ + + Sbjct: 248 QVKLLQVLQDQTFERVGGIKTIQVDVRIIAATNRDLIKEIKEGNFREDLYYRLNVVPIKM 307 Query: 368 PPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRAL 427 PPLR+ +DI+PLT F+ RF D+ + + + +Y WPGN+R+L+N I R + Sbjct: 308 PPLRERKEDIIPLTHYFLDRFNDKLNMDIKGIDPQVLECFKKYNWPGNIRELENLIERII 367 Query: 428 TQLDGYELRPQDI 440 G + P+D+ Sbjct: 368 LLTKGNTISPEDV 380 >UniRef50_Q67RK7 Sigma-54-dependent transcriptional regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67RK7_SYMTH Length = 465 Score = 216 bits (549), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 144/460 (31%), Positives = 238/460 (51%), Gaps = 46/460 (10%) Query: 82 LSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFL-----R 136 + ALL+ L E VL+V ++ + N A QL G RL + A L +G ++ R Sbjct: 19 VRALLDGLAEGVLAVAPDGRIRLVNGAMAQLLGTPRARLLDRRPADLEDGDKWVPPVLRR 78 Query: 137 WLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTI----RMGRQL 192 LE+ + +V+ + +T V L + G V+ I R+ RQ+ Sbjct: 79 CLET----GERQAMVLERAGRRLALTAVPLPE--------GWVLATARDITELDRLERQV 126 Query: 193 QNVAAQ-------------DVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTG 239 + + + + +++V S M+ V++ +++A + + +L+ G++G G Sbjct: 127 ERMTQERERYRHELAGLRAGQAGRAEVVGSSLAMQRVMDLIRRVAPVDSTILLLGESGVG 186 Query: 240 KDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAP--------EGKKGFFEQAN 291 K + A H+ SPR P++ ++CA++P +ESELF ++P EGK G EQA+ Sbjct: 187 KGVLAAEIHRLSPRRSGPFVRIDCAALPGSLLESELFDYSPGSFTGARREGKPGLIEQAH 246 Query: 292 GGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGM 351 GG++ +DEIG++ +Q KLL + + R+G VD+R+I AT ++L +V +G Sbjct: 247 GGTLFIDEIGDVPLELQVKLLHVIQERRIIRLGAVTPTAVDIRIIAATHRDLEAMVAEGR 306 Query: 352 FREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYA 411 FR DLYYRLNV+ + +PPLR+ P+DI L F+ RF V R L + L Y+ Sbjct: 307 FRADLYYRLNVVPVKIPPLRERPEDIPVLARTFLDRFCARYRVER-TLTPEAVERLVAYS 365 Query: 412 WPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERS 471 WPGNVR+L+N + R + LD E+RP+ + LP V V E L E + E Sbjct: 366 WPGNVRELENLVERLVVTLDEREIRPEHLPLPAPGGPPVQVREIV---PLKEAVAALELE 422 Query: 472 VLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKKN 511 ++ + YR + S+ K+ + LG+ T A K+RE+ Q++ Sbjct: 423 LVGEAYRRFGSSVKVGRALGIHQTTAARKIREWKARQERT 462 >UniRef50_UPI0001972FEB sigma-54 factor, interaction region n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001972FEB Length = 638 Score = 216 bits (549), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 129/315 (40%), Positives = 185/315 (58%), Gaps = 18/315 (5%) Query: 201 SAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLA 260 S F I+ S +K + A+K A + +LITG+TGTGK+LFA + H S RA +P++A Sbjct: 330 SHFEDIIGESRVLKDTIHLARKYARSQSSVLITGETGTGKELFAQSIHNESSRADEPFVA 389 Query: 261 LNCASIPEDAVESELFGHAP--------EGKKGFFEQANGGSVLLDEIGEMSPRMQAKLL 312 +NCA++P+ +ESELFG+ EGK G FE A+ G+V LDEIGEM +QAKLL Sbjct: 390 INCAALPQSLLESELFGYVKGAFTGANKEGKMGIFEMAHRGTVFLDEIGEMDLNVQAKLL 449 Query: 313 RFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRD 372 R L + R+G+D + VD+R+I AT KNL ELV++ +FREDL YRLNVL LNLPPLR Sbjct: 450 RVLQEREVCRLGDDRIIPVDIRIISATNKNLYELVEQKLFREDLLYRLNVLELNLPPLRS 509 Query: 373 CPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDG 432 D+ L V + Q P L D +L+R PGNVRQL N + R +T DG Sbjct: 510 RTGDV----PLLVNAYMKRQNRPVTFL-PDAMELLSREPCPGNVRQLFNLLERIVTLSDG 564 Query: 433 YELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQ-LYRNYPSTRKLAKRLG 491 E+ + + + + + + G L++ E++ + L +N+ + K AK LG Sbjct: 565 REISASWL----KNIFSFSGKTEPLPGLLEDTVGNCEQTEIEHALRKNHGNRAKTAKDLG 620 Query: 492 VSHTAIANKLREYGL 506 +S + K+++YGL Sbjct: 621 ISTATLWRKMKKYGL 635 >UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Anaeromyxobacter RepID=B8JAZ2_ANAD2 Length = 481 Score = 216 bits (549), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 125/320 (39%), Positives = 185/320 (57%), Gaps = 18/320 (5%) Query: 202 AFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLAL 261 IV SP M+ V+++ ++A A +L+TG++GTGK+L A A H S R+ KP++ + Sbjct: 165 GLEHIVGRSPAMREVLDRVLRVAPTDATVLVTGESGTGKELVARALHVTSRRSDKPFVPV 224 Query: 262 NCASIPEDAVESELFGHA-------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRF 314 NCA+I + +ESELFGHA ++G FE+ANGG++ +DEIGE SP QAKLLR Sbjct: 225 NCAAITDTLLESELFGHARGAFTGATRARRGMFEEANGGTLFIDEIGETSPGFQAKLLRA 284 Query: 315 LNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCP 374 L +G RRVGE V V+VR+I AT ++L + + FREDL+YRLNV+ L +PPLR+ Sbjct: 285 LQEGEIRRVGESSPVQVNVRIIAATNQDLRRAIAERRFREDLFYRLNVVPLRIPPLRERR 344 Query: 375 QDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYE 434 +D+ L F+ RF G R L + L + WPGNVR+L+N I +A G E Sbjct: 345 EDVPLLAAHFLQRFVQRTGSER-VLTPEAVASLVAHDWPGNVRELENIIEQAAALCTGRE 403 Query: 435 LRPQDILLPDYDAATVAVG---EDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLG 491 +R D+ + A G DA+E T R R++ L R ++A+ LG Sbjct: 404 IRAADVQIEARAAPAGGAGVTLADAVED-----TER--RAITAALARCGNDLGRVARDLG 456 Query: 492 VSHTAIANKLREYGLSQKKN 511 +S T + K++ G+ +++ Sbjct: 457 ISGTTLWRKMKRLGIEAREH 476 >UniRef50_B5YGW3 Acetoacetate metabolism regulatory protein AtoC n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YGW3_THEYD Length = 449 Score = 215 bits (548), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 124/311 (39%), Positives = 193/311 (62%), Gaps = 17/311 (5%) Query: 206 IVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCAS 265 I+ S ++K + E+ +K+A +L+ G+TGTGK+LFA A H+AS R KP++A+NCAS Sbjct: 142 IIGESVEIKLLFEKIRKIANTPTNVLLLGETGTGKELFARAIHEASYRRKKPFVAINCAS 201 Query: 266 IPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDG 318 +PE+ +ESELFG A KKG E A+GG+V LDEIG++ +QAKLLR L D Sbjct: 202 LPENLLESELFGFIKGAFTGAASDKKGLLEIADGGTVFLDEIGDLPLSLQAKLLRVLEDR 261 Query: 319 TFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIM 378 R +G VD+R I AT K+L+E V++G FREDL++RLNV+TL++PPLR+ +DI Sbjct: 262 EIRPLGSVISKKVDLRFISATNKDLIEEVKEGKFREDLFFRLNVITLSIPPLRERGRDIE 321 Query: 379 PLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQ 438 L F+ +FA + G K+ + +L ++ WPGN+R+L+N I +A+ + + P+ Sbjct: 322 ILAHHFMRKFAIKMGKNLKKIDSQALKLLYKHPWPGNIRELQNVIEQAVVFCETDTIMPE 381 Query: 439 DILLPDYDAATVAVGEDAMEG---SLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHT 495 D LP+Y + A E S++E T F +L Y++ + ++LA LG++ Sbjct: 382 D--LPEYIQHPEKFFDRAKEIPVLSIEEYTKEF---ILK--YQSIYTEQELADMLGITRK 434 Query: 496 AIANKLREYGL 506 A+ K +++G+ Sbjct: 435 ALWEKRKKWGI 445 >UniRef50_A9EN62 Sigma-54 dependent transcriptional regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9EN62_SORC5 Length = 648 Score = 215 bits (548), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 125/310 (40%), Positives = 174/310 (56%), Gaps = 9/310 (2%) Query: 206 IVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCAS 265 I+ S M+ V+ Q K+ +LI G+TGTGK+L A A H S R K ++A NCA+ Sbjct: 339 IIGNSDAMRKVIGQLDKVVDTRVTVLIEGETGTGKELIAAAVHYRSRRRDKLFVAQNCAA 398 Query: 266 IPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDG 318 + E +ESELFGH A E KKG FE A+GG++ LDEI E +Q+KLLR L +G Sbjct: 399 LAESLLESELFGHKKGSFTGATEEKKGLFEIADGGTLFLDEITETPLSLQSKLLRALQEG 458 Query: 319 TFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIM 378 R VG HV+VR++ AT +NL + V KG FREDLYYRL V + LPPLR+ DI Sbjct: 459 EIRPVGATSPKHVNVRIVAATNRNLEDEVAKGRFREDLYYRLKVFPIRLPPLRERRDDIS 518 Query: 379 PLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQ 438 L F+ R+ADE G P + ++ Y WPGNVR+L+N + R + QL+ Sbjct: 519 LLAAHFLERYADEIGKPCGGFSQQAMELMVAYDWPGNVRELQNEVQRIVIQLEPGAFGTP 578 Query: 439 DILLPDYDAATVAVGEDAM-EGSLDEITSRFERSVLTQLYRNYPSTR-KLAKRLGVSHTA 496 ++L P V +GSL E+ E+ L + R + + + AK LG++ Sbjct: 579 ELLSPRIRQVEGLVARAGTPKGSLKEMMDAVEKFFLLEALRGHNNNKTNAAKSLGITREG 638 Query: 497 IANKLREYGL 506 + KLR+YG+ Sbjct: 639 LHKKLRQYGI 648 >UniRef50_Q81CD5 Sigma-54-dependent transcriptional activator n=3 Tax=Bacillaceae RepID=Q81CD5_BACCR Length = 469 Score = 215 bits (548), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 135/382 (35%), Positives = 210/382 (54%), Gaps = 40/382 (10%) Query: 158 LMEITPVYLQDENDQHVLTGAVV--------------MLRSTIRMGRQLQNVAA--QDVS 201 L+ PVY DE + GAVV + + M R Q VA + Sbjct: 94 LINSNPVYCNDE-----IIGAVVSETDVTNQVALNEKLFNMSHEMHRLEQEVAKYKDESD 148 Query: 202 AFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLAL 261 F + SP ++ ++ A+K+ + + +LI G++G GK++FA A H+AS A P++++ Sbjct: 149 PFLAMNGKSPVIQRTIQLARKVCSVKSTVLILGESGVGKEVFAKAIHEASEAAKAPFISI 208 Query: 262 NCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLR 313 NC +IPE ESELFG+ +GKKG E A GG++ LDEIGEM MQ KLLR Sbjct: 209 NCGAIPEALFESELFGYERGAFSGANSKGKKGKIELAQGGTLFLDEIGEMPLDMQVKLLR 268 Query: 314 FLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDC 373 L + + RVG + E+++D R+I AT ++L E ++KG FREDLYYRLNV++L++PPLR+ Sbjct: 269 VLQERKYYRVGGEKEINIDFRIIAATNRDLQEEMRKGTFREDLYYRLNVVSLHIPPLRER 328 Query: 374 PQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALT-QLDG 432 +DI+ LT F+ F+ P L + + L Y WPGN+R+L+N + R + DG Sbjct: 329 REDIIELTYSFLNDFSINYNRPIRDLPSSIMHELLHYNWPGNIRELRNVVERLVVFATDG 388 Query: 433 YELRPQDIL-------LPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTR- 484 + Q+ L L ++ A ++ + + SL E E+ V+ + R + Sbjct: 389 --IIKQEYLPFHTTETLDNHTAHSLLLSNNNTILSLQEEMDEHEKKVIERALRILNGNKL 446 Query: 485 KLAKRLGVSHTAIANKLREYGL 506 + AK+LGV+ + N+L++ GL Sbjct: 447 ECAKQLGVTRATLYNRLKKLGL 468 >UniRef50_A0LJL7 Two component, sigma54 specific, transcriptional regulator, Fis family n=21 Tax=Bacteria RepID=A0LJL7_SYNFM Length = 476 Score = 215 bits (548), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 125/324 (38%), Positives = 190/324 (58%), Gaps = 12/324 (3%) Query: 198 QDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKP 257 Q S + S ++ + EQ ++ A +A +LITG+ GTGK+L A HQ S R+ +P Sbjct: 132 QKAHRTSHMTGRSEAVESLREQIRRAAPTNATVLITGENGTGKELAARMIHQLSKRSHRP 191 Query: 258 YLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAK 310 + +NCA+IPED +ESELFGH A E ++G F+ ANGG++ LDEIG+MS R QAK Sbjct: 192 MVEVNCAAIPEDLIESELFGHEKGAFTGAHERRRGRFDVANGGTLFLDEIGDMSLRTQAK 251 Query: 311 LLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPL 370 +LR L + F RVG + VDVRV+ AT K++ ++ G FR+DLYYRLNV+ + +PPL Sbjct: 252 ILRILQEQVFERVGGSRTIQVDVRVVAATNKDIQREIEAGRFRQDLYYRLNVIPIFVPPL 311 Query: 371 RDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQL 430 RD QDI L E F+ A E + R ++ + L +Y+WPGN+R+L+N I R + Sbjct: 312 RDRLQDIPLLVEDFLDDMAAESAMGRKEIDPAVFGPLQQYSWPGNIRELRNFIERMVIMT 371 Query: 431 DGYELRPQDILLPDYDAATVAVGEDAME---GSLDEITSRFERSVLTQLYRNYPSTRKL- 486 G + P+D+ L D+ E+A +L E S FER+ L + + L Sbjct: 372 PGQRIGPRDLPL-DFLNRLPKPPEEAGPYQCATLREARSVFERAYLLRKLDEFAWNVSLT 430 Query: 487 AKRLGVSHTAIANKLREYGLSQKK 510 A ++G+ + + K++ G+ +++ Sbjct: 431 AAQVGLERSHLHRKMKALGIRERE 454 >UniRef50_Q306N7 PilR2 n=17 Tax=Deltaproteobacteria RepID=Q306N7_MYXXD Length = 474 Score = 215 bits (548), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 131/348 (37%), Positives = 192/348 (55%), Gaps = 21/348 (6%) Query: 186 IRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAY 245 +R R+L+ A+ + I+ SP + ++ Q +LA + +LI+G++GTGK+L A Sbjct: 126 VRENRRLKQ-ASLPSTPGGHILGESPALHALLRQVARLAPVDTTVLISGESGTGKELIAR 184 Query: 246 ACHQASPRAGKPYLALNCASIPEDAVESELFGHAP-------EGKKGFFEQANGGSVLLD 298 H SPRA ++A+NC +IP +ESELFGHA K+G F +A+GG++ LD Sbjct: 185 ELHVRSPRAPMSFVAVNCGAIPSGLIESELFGHAKGAFTDARTAKRGLFAEADGGTLFLD 244 Query: 299 EIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYY 358 E+GE+ Q KLLR L +G R VGE+ V+VRV+ AT ++L LV KG FREDLYY Sbjct: 245 EVGELPLAAQVKLLRVLQEGEIRPVGENRVEKVNVRVVAATLRDLSRLVAKGDFREDLYY 304 Query: 359 RLNVLTLNLPPLRDCPQDIMPLTELFVARFADE--QGVPRPKLAADLNTVLTRYAWPGNV 416 RLNV+ L +PPLR+ +D+ L F+ARF E + P L A+ +L YAWPGNV Sbjct: 305 RLNVVNLRVPPLRERREDVPLLARAFIARFNRELNREPPVAGLTAEAEALLKSYAWPGNV 364 Query: 417 RQLKNAIYRALTQLDGYELRPQDI------LLPDYDAATVAVGEDAMEG----SLDEITS 466 R+L+NA+ RA+ D + P ++ P G+ ++G SL Sbjct: 365 RELENAMERAVLLADEPHILPANLPERLWAASPPGPHGEKPHGDPVLQGGGDLSLKRAIR 424 Query: 467 RFERSVLTQLYRNYPSTR-KLAKRLGVSHTAIANKLREYGLSQKKNEE 513 E S + R R + A+ L +SH A+ K++EYG+ E Sbjct: 425 ELEESYIRAALRKTKGNRTRAAELLDISHRALLYKIKEYGIDPDAEAE 472 >UniRef50_A5WGF4 Nitrogen metabolism transcriptional regulator, NtrC, Fis Family n=3 Tax=Psychrobacter RepID=A5WGF4_PSYWF Length = 602 Score = 215 bits (547), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 118/255 (46%), Positives = 156/255 (61%), Gaps = 8/255 (3%) Query: 197 AQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGK 256 A S + I+ SP M+ V +LA +LITG++GTGK+L A A HQ SPR K Sbjct: 192 ASAASESTPIIGQSPAMQTVFRAIGRLASSPITVLITGESGTGKELVAGALHQNSPRQKK 251 Query: 257 PYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQA 309 P++ALN A+IP + +ESELFGH A + G FEQANGG++ LDEIG+M Q Sbjct: 252 PFIALNMAAIPHELIESELFGHEKGAFTGATTLRHGRFEQANGGTLFLDEIGDMPFSTQT 311 Query: 310 KLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPP 369 +LLR L +G F RVG + VDVR+I AT +NL +LV++G FREDL+YRLNV+ L LPP Sbjct: 312 RLLRVLANGEFFRVGGQKPITVDVRIIAATHQNLEQLVKEGKFREDLFYRLNVIRLPLPP 371 Query: 370 LRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQ 429 LR P DI L E F+++ A E + +L + ++ + WPGNVRQL+NA Sbjct: 372 LRARPDDIPDLVEFFMSKAATEMKTDKKQLTTEALHIMQAFDWPGNVRQLENACRWITVM 431 Query: 430 LDGYELRPQDILLPD 444 G L +D L PD Sbjct: 432 ATGERLGVED-LPPD 445 >UniRef50_C1DNV1 Sigma54-dependent activator protein n=8 Tax=Gammaproteobacteria RepID=C1DNV1_AZOVD Length = 667 Score = 215 bits (547), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 155/442 (35%), Positives = 220/442 (49%), Gaps = 34/442 (7%) Query: 85 LLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQD 144 LLE L E ++ +D + + N + QLF + D L G F R E D Sbjct: 232 LLEVLNEGLVVLDERGCIKALNRYARQLFRVERDLL----------GAPFHRLGRGERVD 281 Query: 145 SHNEHVVINGQNFLMEITPVYLQDENDQHVLT----------GAVVMLRSTIRMGRQLQN 194 S +++ L ++ + LQ + H+ G +V LR R+ + Sbjct: 282 S----LLLRADEGLHDLD-ITLQLHDGTHLSCLASVCPTERGGRIVSLRENRRIREITRR 336 Query: 195 VAAQDVS-AFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPR 253 + S F I+ S M+ + A+ + + LI G++GTGK+LFA A H AS R Sbjct: 337 IIGTQASYTFETILGGSRAMQDTLRLARIASRGDSTTLILGESGTGKELFAQAIHNASER 396 Query: 254 AGKPYLALNCASIPEDAVESELFGH--------APEGKKGFFEQANGGSVLLDEIGEMSP 305 G P++A+NC +IP D V+SELFG+ A G G FE A+GG++ LDEIG+M Sbjct: 397 CGGPFVAVNCGAIPRDLVQSELFGYIEGAFTGSARGGSAGKFELADGGTIFLDEIGDMPF 456 Query: 306 RMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTL 365 QA LLR L +G RVG VDVR++ AT +NL V G FREDLYYRLNVL+L Sbjct: 457 DAQASLLRVLQEGEVTRVGAKRSQPVDVRIVAATNRNLSRAVADGSFREDLYYRLNVLSL 516 Query: 366 NLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYR 425 ++PPLR +DI L + F+ R A P + + +L +AWPGNVR+L+N I R Sbjct: 517 SVPPLRMRREDIPTLAQHFLERCARSLRKPVRGIVREALDILMAHAWPGNVRELENTIER 576 Query: 426 ALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRK 485 A G + +D+ L A A G+ ++ S ++ L + R Sbjct: 577 AANLAGGELIEAEDLPLELAQVARRAAEPAVRCGAAMDLGSHEMNAIAAALRECRGNVRL 636 Query: 486 LAKRLGVSHTAIANKLREYGLS 507 AKRLGVS + NK+ YGLS Sbjct: 637 AAKRLGVSRGGLYNKMNRYGLS 658 >UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Contains REC, AAA-type ATPase, and DNA-binding Fis domains) n=4 Tax=Verrucomicrobia RepID=B3DZ60_METI4 Length = 464 Score = 214 bits (546), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 122/317 (38%), Positives = 186/317 (58%), Gaps = 12/317 (3%) Query: 202 AFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLAL 261 +I+ S MK V E+ +++A A +L+ G++GTGK+L A+A HQ SPR P++ + Sbjct: 143 GLEKIIGNSAAMKAVFEKIKQVASSKATVLLEGESGTGKELVAHAIHQLSPRKNFPFVVV 202 Query: 262 NCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRF 314 +CA++ +ESELFGH A E + G FE+A G++ LDEIGE+ Q KLLR Sbjct: 203 HCAALSPQLLESELFGHEKGAFTGAIERRIGRFEEAARGTLFLDEIGEIDLPTQVKLLRA 262 Query: 315 LNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCP 374 L + T +RVG + V VDVRVI AT KNL ++V++G FREDL++RLNV+ + +PPLR+ Sbjct: 263 LGEKTIQRVGSNKVVAVDVRVIAATNKNLEKMVEEGKFREDLFFRLNVVRIVMPPLRERK 322 Query: 375 QDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYE 434 +DI L + F+A FA E G +L+ + +L Y WPGNVR+LK AI + G E Sbjct: 323 EDIPLLAQAFLAEFAAENGKKIDRLSPEAMKILLEYDWPGNVRELKMAIEHGVVLCQGEE 382 Query: 435 LRPQD----ILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRL 490 +RP+D I +P + + ++ E + +R +L L AK+L Sbjct: 383 IRPRDLPERIRIP-RPLLSAPISVESSEPDCFNLKEAEKRLILHALRVCQGKKTSAAKKL 441 Query: 491 GVSHTAIANKLREYGLS 507 G+S + K++++ L+ Sbjct: 442 GISRKTLQRKIKQFELT 458 >UniRef50_Q3AR86 DNA-binding protein Fis / transcriptional regulator, Fis family n=11 Tax=Chlorobiaceae RepID=Q3AR86_CHLCH Length = 549 Score = 214 bits (546), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 123/321 (38%), Positives = 186/321 (57%), Gaps = 23/321 (7%) Query: 204 SQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNC 263 + I+ + M + K+A SA L+ G++G GK+L A A H S RA KP++ NC Sbjct: 235 ANIIGNTKPMVSLYSMIDKIAKTSATTLVLGESGVGKELVASAIHFKSRRAEKPFIKFNC 294 Query: 264 ASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLN 316 A++PE+ VESELFGH A + G FE AN G++ LDE+GE+S +QAKLLR L Sbjct: 295 AALPENIVESELFGHEKGAFTGALATRHGRFEMANNGTIFLDEVGELSLSVQAKLLRILQ 354 Query: 317 DGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQD 376 + F RVG + VDVRVI AT +NL EL+++G FREDL+YRLN+ + +PPLR+ D Sbjct: 355 EKEFERVGGSKTIKVDVRVIAATNRNLEELIRQGQFREDLFYRLNIFPITVPPLRERKTD 414 Query: 377 IMPLTELFVARF--ADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRAL-----TQ 429 I+ L + FV ++ A+++GV R ++ +L RY WPGNVR+L+N I RA+ Sbjct: 415 ILLLADYFVEKYNKANQKGVRR--ISTTAIDMLMRYHWPGNVRELQNCIERAVILSEDNV 472 Query: 430 LDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKR 489 + GY L P L + T G +++ LD I ++ L R + + A + Sbjct: 473 IHGYHLPP--TLQTAESSGTPYTG--SLQQKLDAIEKEM---IIEALKRTQGNMSRAAMQ 525 Query: 490 LGVSHTAIANKLREYGLSQKK 510 LG+S + +++++ + +K Sbjct: 526 LGLSERIMGLRIKKFNIDYRK 546 >UniRef50_Q2LRW3 Response regulator containing sigma 54 interaction domain n=3 Tax=Bacteria RepID=Q2LRW3_SYNAS Length = 457 Score = 214 bits (546), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 126/351 (35%), Positives = 201/351 (57%), Gaps = 14/351 (3%) Query: 175 LTGAVVMLRSTIRMGR-QLQNVA-AQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLI 232 L ++ L+ + + R + +NV Q ++ ++ SP + ++E +A +A +LI Sbjct: 107 LEKIILTLKHALDLSRLEEENVLLKQKINRDYELTGKSPPIIELMEMISIVAPTNAWILI 166 Query: 233 TGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKG 285 G+ GTGK+L A A H+ S RA KP + +NCA+IPE+ +ESELFGH A E K+G Sbjct: 167 MGENGTGKELVARAIHRQSKRADKPMVEVNCAAIPEELIESELFGHEKGAFTGATEKKRG 226 Query: 286 FFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVE 345 F+ A+ G++ LDE+ +MS + QAK+LR L + F RVG + + +DVRV+ AT K+L + Sbjct: 227 KFDIAHEGTIFLDEVADMSLKAQAKILRILQEKKFERVGGNKVIQLDVRVLAATNKDLEK 286 Query: 346 LVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNT 405 +++G FR+DL+YRLNV+ L +PPLR +DI L E F++ FA ++G P + D Sbjct: 287 EMEEGRFRQDLFYRLNVIPLKVPPLRSRKEDIPLLAERFLSDFALKEGEPGKTIQDDALA 346 Query: 406 VLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATV----AVGEDAMEGSL 461 +L ++WPGNVR+LKN I R + DI D V G + + GS Sbjct: 347 LLMEHSWPGNVRELKNFIERLAIMTTSNVITVHDIPPLPRDGHKVEPFREPGFELLAGSF 406 Query: 462 DEITSRFERSVLTQLYRNYP-STRKLAKRLGVSHTAIANKLREYGLSQKKN 511 E FE+ +++ R + + K A+ +G+ + + K++ YGL K + Sbjct: 407 REAKMDFEKQYISRKLREFDGNISKTAESIGLERSNLHKKIKAYGLESKND 457 >UniRef50_A8RIT6 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RIT6_9CLOT Length = 639 Score = 214 bits (546), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 150/466 (32%), Positives = 250/466 (53%), Gaps = 39/466 (8%) Query: 67 VRTVPWMPSEREHLAL-SALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTA 125 VRTV + ERE A+ + + + + VL VD++ + + NPA+ +++ +L+ Sbjct: 184 VRTVDVVRMERERSAMFTTITQTAMDGVLYVDIQQTIKICNPAALKMYTGPKKKLQ---G 240 Query: 126 AQLINGFNFLRWLESEPQDSHNE--HVVINGQNFLMEIT--PVYLQDENDQHVLTGAVVM 181 L + F FL S + E + +I +N+ + T PV + +TG VV Sbjct: 241 LSLQSAFPFLSEPVSTVISTGTELPNQLIRWKNYTINATIHPVIINSR-----ITGIVVT 295 Query: 182 LRST-------IRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITG 234 + I++ +++ + F+ I+ SP++ +V+E+A+K A +S+ +LI G Sbjct: 296 FQDVTQIQQVEIQIRKKMTDKGLNAHYHFNDIIHESPEIDYVIEKAKKFASVSSNILIEG 355 Query: 235 DTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH--------APEGKKGF 286 +TGTGK+LFA + H AS R P++A+NCA++PE+ +ESELFG+ A GK G Sbjct: 356 ETGTGKELFAQSIHNASTRCNGPFVAVNCAALPENLLESELFGYVEGAFTGTAKGGKTGL 415 Query: 287 FEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVEL 346 FE A+ G++ LDEI E+ +Q KLLR L + RRVG D + VDVR+I AT +L + Sbjct: 416 FELAHKGTLFLDEISEIPLSIQGKLLRVLQEHEVRRVGGDRVISVDVRIIAATNHSLSRI 475 Query: 347 VQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTV 406 ++G FR+DL YRLNVL L LPPLR D L ++ + + G P +A + Sbjct: 476 TEQGRFRQDLLYRLNVLKLFLPPLRRRCGDTKILFLHYLNLYYRQLGRIIPHVATAAIQM 535 Query: 407 LTRYAWPGNVRQLKNAIYR-ALTQLDGYELRPQDI---LLPDYDAATVAVGEDAMEGSLD 462 L+ Y +PGN+R+L+N R + +D E+ D+ L P+ + V + + + Sbjct: 536 LSDYHFPGNIRELRNVTERLVVICMDKEEITADDMREALHPE----ELPVKFQSTDMPIP 591 Query: 463 EITSRFERSVLTQLYR--NYPSTRKLAKRLGVSHTAIANKLREYGL 506 ER L ++ NY T A++LG++ T + +++++G+ Sbjct: 592 PFYQDGEREFLIRILEESNYNQTLT-AEKLGINRTTLWRRMKKHGI 636 >UniRef50_C5EM87 Sigma54 specific transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EM87_9FIRM Length = 642 Score = 214 bits (546), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 146/464 (31%), Positives = 240/464 (51%), Gaps = 32/464 (6%) Query: 67 VRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAA 126 ++ + + ++ E L L L E + + ++ VD + ++ +AN ++F + R Sbjct: 186 LKNMEYEANQMEFLRL--LAENVTDGLIFVDDRERIGIANANVGRIFPNR----RPVAGK 239 Query: 127 QLINGFNFL--RWLES--EPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLT----GA 178 F F+ +L++ E Q NE N ++ TPV + E ++T G Sbjct: 240 GFQESFPFMAKNYLKACREKQHLDNEIYRTRDMNIAVDFTPVMIGGEYKGMIITIHDIGR 299 Query: 179 VVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGT 238 + + IR +L + FS I+ SP M+HV+E+A+K A +++ +LI G+TGT Sbjct: 300 LQQREAQIR--SKLNEMGLYAKYQFSDIIHQSPVMEHVIERAEKFAAVTSNVLIYGETGT 357 Query: 239 GKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH--------APEGKKGFFEQA 290 GK+L A + H AS R P++A+NCAS PE+ +ESELFG+ GK G FEQA Sbjct: 358 GKELVAQSIHNASKRKSGPFVAINCASFPENLLESELFGYEEGAFTGAVKGGKPGLFEQA 417 Query: 291 NGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKG 350 +GG++ LDE+ E+ Q KLLR L + RRVG V +DVR+I AT KNL ++ G Sbjct: 418 HGGTLFLDEVSELPVSFQGKLLRVLQEREVRRVGGKKVVKIDVRIIAATNKNLKQMTLDG 477 Query: 351 MFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRY 410 +FREDL YRL+VL L LPPLR +DI L E ++ + ++ D T+L+ Y Sbjct: 478 LFREDLLYRLDVLNLPLPPLRKRREDIRLLAEHYLMEYKEQFETCADHFTEDAMTLLSSY 537 Query: 411 AWPGNVRQLKNAIYRALTQLDGYELRPQDIL----LPDYDAATVAVGEDAM---EGSLDE 463 + GN+R+L+N + R ++ D+ L +YD G+ + + Sbjct: 538 PFMGNIRELRNIVERISVTAQDTAVQVLDVEESLGLGEYDRQIQTAGQVGRIQDQAAAPA 597 Query: 464 ITSRFERSVLTQLYRNYPSTR-KLAKRLGVSHTAIANKLREYGL 506 ++ + +L + + ++A+RLG++ T + K+ + GL Sbjct: 598 YIRNIQKEEIERLLKECGYNKSEVARRLGLNRTTLWRKMGKMGL 641 >UniRef50_A6CKR1 Putative uncharacterized protein n=1 Tax=Bacillus sp. SG-1 RepID=A6CKR1_9BACI Length = 685 Score = 214 bits (546), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 123/316 (38%), Positives = 184/316 (58%), Gaps = 13/316 (4%) Query: 202 AFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLAL 261 + I++ P M + + A K A + +LI G++GTGK+LFA+A H +S R+ ++ + Sbjct: 373 TWDHILSKHPYMDKLKKSAAKAAKGRSTVLIRGESGTGKELFAHAIHNSSARSDGKFVIV 432 Query: 262 NCASIPEDAVESELFGH--------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLR 313 NCA+IPED +ESE FG+ GK G F+ ANGG++ LDEIG+MS +QAKLLR Sbjct: 433 NCAAIPEDLLESEFFGYDEGAFTGAKQRGKVGKFDLANGGTLFLDEIGDMSVALQAKLLR 492 Query: 314 FLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDC 373 L + F RVG + + VDVR+I AT ++L ++V++G FREDLYYRLNV++L +PPLR+ Sbjct: 493 VLQEREFYRVGGNSRIKVDVRIIAATNRDLEKMVKEGEFREDLYYRLNVISLKIPPLRER 552 Query: 374 PQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGY 433 D+ LT + G ++ L +Y WPGNVR+LKN + RA+T + Sbjct: 553 IHDVEYLTSQLMIELNSMLGTSITGISPKAKESLLQYNWPGNVRELKNILERAMTFAEHG 612 Query: 434 ELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVS 493 ++ +D LPDY + + + G ++ R LTQ N +L LG+S Sbjct: 613 NIQVED--LPDYLIDQLTIPKKEKNGLAEDAELEAIRKALTQANGNKAQAARL---LGIS 667 Query: 494 HTAIANKLREYGLSQK 509 + + KL++Y LS K Sbjct: 668 RSGLYEKLKKYELSAK 683 >UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Sensor HydH) n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZK3_9PROT Length = 463 Score = 214 bits (546), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 120/333 (36%), Positives = 190/333 (57%), Gaps = 22/333 (6%) Query: 195 VAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRA 254 V +QD + + ++ P ++ + E LA + +LITG++G GK++ A A H++ R+ Sbjct: 136 VRSQDQN--TGLIGQCPAIQKLTETVSLLANSDSTVLITGESGCGKEVLAKALHKSGSRS 193 Query: 255 GKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRM 307 GKP +++NC +IPE+ +ESELFGH A + G FE ANGG++ LDEIG+MS ++ Sbjct: 194 GKPLVSINCGAIPEELLESELFGHVKGAFTGAVRARPGRFEIANGGTIFLDEIGDMSAKL 253 Query: 308 QAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNL 367 Q KLLR L + F VG +HVDVRVI AT ++L + G FREDLYYRLNV+ L L Sbjct: 254 QVKLLRVLQERCFEPVGSQQSIHVDVRVIAATHRDLEAEIAAGRFREDLYYRLNVIPLTL 313 Query: 368 PPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRAL 427 PPLR+ DI+ LT+ F+ RF ++ ++ ++ ++ Y WPGNVR+L+N I R Sbjct: 314 PPLRERGDDILLLTDHFITRFNQQKKADITGVSDEVKRIILNYQWPGNVRELQNLIERVT 373 Query: 428 TQLDGYELRPQDI---LLPDYDAATVAVGEDA-------MEGSLDEITSRFERSVLTQLY 477 T + +D+ ++ D + + D ++ ++DE S +L+ L Sbjct: 374 TLKRHGIMELEDLPSRMISDKERVLQSFRMDVENAECIDLKSTVDEFESHL---ILSALQ 430 Query: 478 RNYPSTRKLAKRLGVSHTAIANKLREYGLSQKK 510 R + + A L ++ T + K+++ GL K Sbjct: 431 RFQWNKNQAANFLAMNRTTLVEKIKKKGLQPTK 463 >UniRef50_C5EWB0 Sigma-54 dependent transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EWB0_9FIRM Length = 696 Score = 214 bits (546), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 133/361 (36%), Positives = 203/361 (56%), Gaps = 34/361 (9%) Query: 81 ALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLES 140 + +L++ + +L ++ + V + N + + G+ L A +L F +L + Sbjct: 216 SFQSLIDIMEIGILGINEQGAVFICNKKAETIVGRNLADAIGQQAEEL---FPYLPF--E 270 Query: 141 EPQDSHNE----HVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLR-------STIRMG 189 E + +H + V IN + I P+ +N G +VML+ ++ Sbjct: 271 ECRRTHRKIDAKLVKINQNPVTVGIYPISHNQKN-----MGFLVMLQHFGEEEEKQHKIR 325 Query: 190 RQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQ 249 QL N F I+ +SP + V E A+K+A A +LITG++GTGK+LFA A H Sbjct: 326 NQLLNKGHTAKYTFDNIIGISPSIDRVREIAKKMAGTRASILITGESGTGKELFAQAIHN 385 Query: 250 ASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIG 301 AS R +P++ALNCA++PE+ +ESELFG+ G+ G FE A+ G++ LDE+ Sbjct: 386 ASDRRVEPFIALNCAALPENLLESELFGYVDGAFTGAKKGGRLGLFEFAHNGTLFLDEVE 445 Query: 302 EMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLN 361 MSP +Q KLLR + + R+G+ + +DVR+I AT +NL +LVQKG FREDLYYRLN Sbjct: 446 GMSPMLQVKLLRVIQEHEVMRLGDTRLISIDVRIIAATNRNLEQLVQKGEFREDLYYRLN 505 Query: 362 VLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKN 421 L +NLPPLR+ +DI+PL ++ FA+E G R +L+ + L + W GNVR+LKN Sbjct: 506 TLPINLPPLRERTEDIIPLIQM----FAEENG-SRFQLSGPVCEALKSHCWRGNVRELKN 560 Query: 422 A 422 Sbjct: 561 C 561 >UniRef50_A3EU11 Putative sigma54 specific transcriptional regulator, Fis family n=2 Tax=Leptospirillum sp. Group II RepID=A3EU11_9BACT Length = 463 Score = 214 bits (546), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 125/317 (39%), Positives = 181/317 (57%), Gaps = 11/317 (3%) Query: 197 AQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGK 256 ++D A S +V SP M +K+A A +LITG++GTGK+L A A H+ S R+ Sbjct: 150 SRDHVAESDMVGSSPSMMECFRSIRKIAGTDACVLITGESGTGKELVARAIHERSKRSSG 209 Query: 257 PYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQA 309 P++ LNC +IP + ++SELFG+ A K G E AN G+++LDEIG+M +Q Sbjct: 210 PFITLNCGAIPSNLIQSELFGYEKGAFTGAHSRKIGHIEAANHGTIMLDEIGDMPFELQV 269 Query: 310 KLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPP 369 LLR L G +RVG E+ VDVR+I AT +L + ++G FREDLYYRL+VL ++LPP Sbjct: 270 NLLRVLQFGKIQRVGSSAEIPVDVRIIAATHIDLEKACREGRFREDLYYRLHVLRVSLPP 329 Query: 370 LRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQ 429 LRD DI L F RF+ E G +A+ V+ Y+WPGNVR+L N I A+ Sbjct: 330 LRDRGADISLLARYFCKRFSAEYGATSKPFSAEALEVIQAYSWPGNVRELINKIKSAVLM 389 Query: 430 LDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKR 489 +G + P+D+ L + G+ E + EIT R Q + N S + A+ Sbjct: 390 SEGPLIEPRDLQLENMPHPAKKSGKTLRE--IREITERETLRETLQKFENNVS--RTARE 445 Query: 490 LGVSHTAIANKLREYGL 506 LGV+ T + + L+++ L Sbjct: 446 LGVTRTTLYDLLKKHKL 462 >UniRef50_Q1D5T0 Sigma-54 dependent DNA-binding reponse regulator n=9 Tax=Cystobacterineae RepID=Q1D5T0_MYXXD Length = 477 Score = 214 bits (546), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 129/328 (39%), Positives = 181/328 (55%), Gaps = 20/328 (6%) Query: 205 QIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCA 264 +V VS M + + Q+ +LITG++GTGK+ A A +ASPRA +P+L NCA Sbjct: 148 SLVFVSEPMARLAQLVQRAGSRDVTVLITGESGTGKERVADALVRASPRANRPFLRFNCA 207 Query: 265 SIPEDAVESELFGHAP-------EGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLND 317 ++ E+ E+ELFGHA + G F +A+GG++LLDE+GE++P +QA+LLR L + Sbjct: 208 ALTEELAEAELFGHARGAFTGAHRARPGLFREADGGTLLLDEVGELAPTLQARLLRVLQE 267 Query: 318 GTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDI 377 G R VGED V VDVR+I AT ++L L +G FREDLYYRLNV+ L +PPLR+ P+DI Sbjct: 268 GEVRPVGEDRPVTVDVRIIAATHRDLRRLALEGAFREDLYYRLNVVQLRVPPLRERPEDI 327 Query: 378 MPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRA----------L 427 L +F+ RF D K+ L WPGNVR+L+N + L Sbjct: 328 PVLARVFLDRFIDRFHTGPLKIPDGFFEQLRALPWPGNVRELENTLESLVALSSEGRLDL 387 Query: 428 TQLDGYELRPQDILLPDYDAATVAVG-EDAMEGS-LDEITSRFERSVLTQLYRNYPSTR- 484 QL E D P + V G +D G+ L E +ER ++ R R Sbjct: 388 GQLPSAEPAGADSGFPGASSDPVRPGPQDGAPGAGLKERVEAYERGLVLDALRIAGGNRS 447 Query: 485 KLAKRLGVSHTAIANKLREYGLSQKKNE 512 + A+RLG+ + +KLR+YGL E Sbjct: 448 EAARRLGIGRATLHDKLRKYGLDDGGEE 475 >UniRef50_Q1D9F3 Sigma-54 dependent transcriptional regulator, Fis family n=3 Tax=Cystobacterineae RepID=Q1D9F3_MYXXD Length = 546 Score = 214 bits (545), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 124/332 (37%), Positives = 196/332 (59%), Gaps = 24/332 (7%) Query: 198 QDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKP 257 ++ ++F I+ P ++ + E +++A SA + I G++GTGK+L A A H S RA +P Sbjct: 223 KEPTSFHGIIGGDPSVRQLSELIERVAPSSAAVTILGESGTGKELVARAIHACSQRANRP 282 Query: 258 YLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAK 310 + +NCA+I ++ +ESELFGH A +KG FE+A+GG++ LDEIGE+ +QAK Sbjct: 283 LVPVNCAAISKELIESELFGHEKGSFTGAMGARKGAFEEADGGTLFLDEIGELPLDLQAK 342 Query: 311 LLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPL 370 LLR L G +RVG VDVRV+ AT ++L+ ++G FREDLYYRL V+ L+LPPL Sbjct: 343 LLRALEGGEIKRVGASRPQTVDVRVVAATNRDLLAAAREGRFREDLYYRLCVIPLHLPPL 402 Query: 371 RDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTR---YAWPGNVRQLKNAIYRAL 427 R D+ L E FV +A PR + L R +AWPGN+R+L+N ++RAL Sbjct: 403 RSRKADLGSLAEHFVRTYA-----PRGQSVRFTPAALERLQHHAWPGNIRELRNVVHRAL 457 Query: 428 TQLDGYELRPQDILLPDYDA-----ATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPS 482 G + DI +D +AV E +L+++ + ER ++ R Y + Sbjct: 458 LLRKGPLIDAGDI---SFDQELNRETGIAVPELPPGMTLEQMLEKLERQIVEAALRRYNN 514 Query: 483 TR-KLAKRLGVSHTAIANKLREYGLSQKKNEE 513 R ++A+ LGV+ + + +L+++GL+++ +E Sbjct: 515 NRERVARELGVARSTLFKRLKDWGLTKQDEQE 546 >UniRef50_A9GSC8 Sigma-54 dependent DNA-binding response regulator n=3 Tax=Myxococcales RepID=A9GSC8_SORC5 Length = 503 Score = 214 bits (545), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 114/264 (43%), Positives = 168/264 (63%), Gaps = 9/264 (3%) Query: 170 NDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAP 229 N + VL G L+++ R+ R+++++ AQ V A +++ S M+ + ++ ++A A Sbjct: 129 NRERVLVGVKNALQNS-RLAREVEDLKAQ-VQARYEMIGQSAAMQRLFKEIDRVAPTKAS 186 Query: 230 LLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH-------APEG 282 +LITG++GTGK+L + A H+ SPRA P++ +NCA+IP + +ESELFGH A Sbjct: 187 VLITGESGTGKELVSRAIHRLSPRARGPFVRVNCAAIPRELIESELFGHERGAFTGASGP 246 Query: 283 KKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKN 342 K+GFFEQA+GG++ LDEIG+M QAK+LR L G RVG +H HVDVRV+ AT K+ Sbjct: 247 KRGFFEQAHGGTLFLDEIGDMDLAAQAKVLRALQSGEICRVGSEHSRHVDVRVLAATNKD 306 Query: 343 LVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAAD 402 L V FREDL++RL V + P LRD +D+ L + F+A F +E G+ + + Sbjct: 307 LSREVAALRFREDLFFRLAVFPIKSPALRDRMEDLRALADAFMAAFCNENGLKQKAIDPV 366 Query: 403 LNTVLTRYAWPGNVRQLKNAIYRA 426 + L R +WPGNVR+LKN I RA Sbjct: 367 VYAALERRSWPGNVRELKNVIERA 390 >UniRef50_A6LV27 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Clostridium RepID=A6LV27_CLOB8 Length = 568 Score = 214 bits (545), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 128/357 (35%), Positives = 193/357 (54%), Gaps = 14/357 (3%) Query: 161 ITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFS--QIVAVSPKMKHVVE 218 + V +D +D H L+ ++ L + + +A + +S I+ S K++ V + Sbjct: 213 VGKVVFKDISDFHALSKKLLDLEKEVEFYKS--KIAENKTAKYSVENIIGHSNKIRKVKD 270 Query: 219 QAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH 278 K+A ++ +LI G++GTGK++ A++ H +S R P++ +NCASIP + +ESELFG+ Sbjct: 271 LIGKVANTNSNVLINGESGTGKEMIAHSIHNSSKRYLAPFIKINCASIPAELLESELFGY 330 Query: 279 APEGKKG--------FFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVH 330 G FE ANGGS+ LDEIG+M+ MQAK+LR + + +G Sbjct: 331 EEGAFTGAKKGGKKGKFELANGGSIFLDEIGDMNINMQAKILRVIQEREIESIGGSGVKS 390 Query: 331 VDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFAD 390 VDVR+I AT KNL ELV+KG FREDLYYRLNV+ + PPLR+ +DI L + A Sbjct: 391 VDVRIITATNKNLEELVKKGEFREDLYYRLNVVKIVSPPLRERKEDIPALANALRIKIAK 450 Query: 391 EQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATV 450 V ++ D L Y WPGN+R+L+N I RA+ LD + + L + +A Sbjct: 451 RLDVYVEGISKDAIECLGNYDWPGNIRELENVIERAINLLDSNIMIKTEHLSKRFTSAKY 510 Query: 451 AVGEDAMEGSLDEITSRFERSVLTQ-LYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 D E L I E+ V+ + L RN + K A+ LG+S + K+ E+ L Sbjct: 511 KRYSDKNE-YLKTIVEEVEKEVILECLNRNNWNKNKTAQILGISRAGLYKKIEEFNL 566 >UniRef50_B5EHD0 Two component, sigma54 specific, transcriptional regulator, Fis family n=7 Tax=Desulfuromonadales RepID=B5EHD0_GEOBB Length = 458 Score = 214 bits (545), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 124/321 (38%), Positives = 183/321 (57%), Gaps = 18/321 (5%) Query: 204 SQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNC 263 S I+ S + + Q +++A + + +LITG++GTGK++ A A H S R + ++A+NC Sbjct: 140 SPIIGKSEAFQEMAAQVREIARIPSTVLITGESGTGKEVVARAIHDLSDRKEQAFIAINC 199 Query: 264 ASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLN 316 ASIP +ESELFGH A KKG FE+A+ G++ LDEIGEM MQ KLLR L Sbjct: 200 ASIPAPLLESELFGHEKGAFTGASGRKKGLFEEAHHGTIFLDEIGEMDMAMQVKLLRVLQ 259 Query: 317 DGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQD 376 + T RRVG ++ +D RVI AT +NL + +++ FREDL+YRLNV +N+PPLR+ P D Sbjct: 260 ERTIRRVGAVKDIEIDARVIAATNRNLAKRIEEKSFREDLFYRLNVFPINIPPLRERPAD 319 Query: 377 IMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELR 436 I L F+ F+ G ++ + ++ +YAWPGNVR+L+N I R G L Sbjct: 320 IAALAVYFLDSFSRSFGRDFRDVSPEAEQLMAQYAWPGNVRELRNVIERICIMRSGPTLL 379 Query: 437 PQDILLPDYDAATVAVGED--------AMEGSLDEITSRFERSVLTQ-LYRNYPSTRKLA 487 P+ LP +TVA A + L+E S E+S++ Q L + + + A Sbjct: 380 PEH--LPQEIRSTVAPPPLPAELPISIAADLGLEEAVSAIEKSLIQQALQKTGWNVLQTA 437 Query: 488 KRLGVSHTAIANKLREYGLSQ 508 L + + K+ +YGL Q Sbjct: 438 ANLKIPRGTLRYKMEKYGLIQ 458 >UniRef50_P17899 Transcriptional regulatory protein flbD n=24 Tax=Alphaproteobacteria RepID=FLBD_CAUCR Length = 455 Score = 214 bits (545), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 121/318 (38%), Positives = 185/318 (58%), Gaps = 19/318 (5%) Query: 206 IVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCAS 265 +V P M+ V++ A ++A A +LITG++G+GK++ A H S RA P++++NCA+ Sbjct: 120 MVVRDPAMEQVIKLADQVAPSEASILITGESGSGKEVMARYVHGKSRRAKAPFISVNCAA 179 Query: 266 IPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDG 318 IPE+ +ESELFGH A + G FE+A+GG++LLDEI EM R+QAKLLR + + Sbjct: 180 IPENLLESELFGHEKGAFTGAMARRIGKFEEADGGTLLLDEISEMDVRLQAKLLRAIQER 239 Query: 319 TFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIM 378 RVG V V++R++ + ++L + V+ G FREDL YRLNV+ L LPPLR+ P D++ Sbjct: 240 EIDRVGGSKPVKVNIRILATSNRDLAQAVKDGTFREDLLYRLNVVNLRLPPLRERPADVI 299 Query: 379 PLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQ 438 L E FV +++ G+ ++A+ L + WPGNVR+L+NA++RA+ G E+ Sbjct: 300 SLCEFFVKKYSAANGIEEKPISAEAKRRLIAHRWPGNVRELENAMHRAVLLSAGPEIEEF 359 Query: 439 DILLPD----YDAATVAVGEDAMEGS-------LDEITSRFERSVLTQLYRNYPSTRKLA 487 I LPD A VAV A + + + E+ ++ + R A Sbjct: 360 AIRLPDGQPMAPAPDVAVARGAQMAADAASRAFVGSTVAEVEQQLIIDTLEHCLGNRTHA 419 Query: 488 KR-LGVSHTAIANKLREY 504 LG+S + NKL+EY Sbjct: 420 ANILGISIRTLRNKLKEY 437 >UniRef50_B4UM36 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Anaeromyxobacter sp. K RepID=B4UM36_ANASK Length = 465 Score = 214 bits (544), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 126/310 (40%), Positives = 180/310 (58%), Gaps = 14/310 (4%) Query: 206 IVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCAS 265 ++ S M+ V ++ A P+L+TG+TGTGKDL A H+ S RAG+P++ +NCA+ Sbjct: 138 VLGDSAPMRRVRDRLDAAAASDVPVLVTGETGTGKDLCARTIHERSHRAGRPFVVVNCAA 197 Query: 266 IPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDG 318 IPE ESELFGH A + G FE A+GG++ LDE+GE++ QAKLLR L Sbjct: 198 IPEALFESELFGHEKGAFTGADRKRIGRFEAADGGTLFLDEVGELAASSQAKLLRALESS 257 Query: 319 TFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIM 378 TF VG + V VDVRVI AT ++L + +G FR+DLYYRLNV+ L+ PPLR+ D+ Sbjct: 258 TFEPVGSNRSVRVDVRVIAATNRDLASAIARGAFRKDLYYRLNVIDLHAPPLRERRGDVP 317 Query: 379 PLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQ 438 LT F+AR A G P P+L + L + +PGNVR+L++A+ RA+ G +R + Sbjct: 318 VLTAAFLARIAGRLGRPVPQLEPAVVAALAAHDYPGNVRELQHALERAVALARGGPIRLE 377 Query: 439 DILLPDYDAATVAVGEDAMEGS----LDEITSRFERSVLTQLYRNYPSTR-KLAKRLGVS 493 L PD A + GE A G L E +FE+ + + R + A LG+S Sbjct: 378 H-LPPDL-AGPLPAGEAAPAGEGLARLGEAVEQFEQQYIRRALEKTGGHRARAAALLGIS 435 Query: 494 HTAIANKLRE 503 ++ +LR+ Sbjct: 436 RKSLWERLRD 445 >UniRef50_A9VII1 PAS modulated sigma54 specific transcriptional regulator, Fis family n=16 Tax=Bacillales RepID=A9VII1_BACWK Length = 553 Score = 214 bits (544), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 135/380 (35%), Positives = 209/380 (55%), Gaps = 36/380 (9%) Query: 158 LMEITPVYLQDENDQHVLTGAVV--------------MLRSTIRMGRQLQNVAA-QDVS- 201 L+ PVY DE + GAVV + + M R Q VA +D S Sbjct: 178 LINSNPVYCNDE-----IIGAVVSETDVTNQVALNEKLFNMSHEMHRLEQEVAKYKDTSD 232 Query: 202 AFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLAL 261 F + SP ++ ++ A+K+ + + +LI G++G GK++FA A H+AS A P++++ Sbjct: 233 PFLAMNGKSPVIQRTIQLARKVCSVKSTVLILGESGVGKEVFAKAIHEASETANAPFISI 292 Query: 262 NCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLR 313 NC +IPE ESELFG+ +GKKG E A GG++ LDEIGEM MQ KLLR Sbjct: 293 NCGAIPEALFESELFGYERGAFSGANSKGKKGKIELAQGGTLFLDEIGEMPLDMQVKLLR 352 Query: 314 FLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDC 373 L + + RVG + E+++D R+I AT ++L E ++KG FREDLYYRLNV++L++PPLR+ Sbjct: 353 VLQERKYYRVGGEKEINIDFRIIAATNRDLQEEMRKGTFREDLYYRLNVVSLHIPPLRER 412 Query: 374 PQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALT-QLDG 432 +DI+ LT F+ F+ P L + + L Y WPGN+R+L+N + R + DG Sbjct: 413 REDIIELTYTFLNDFSINYNRPIRDLPSSIMHELLHYNWPGNIRELRNVVERLVVFATDG 472 Query: 433 Y---ELRP--QDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTR-KL 486 E P + L + + ++ + + SL E E+ ++ + R + + Sbjct: 473 IIKQEYLPFHTNDTLENETSHSLLLSNNNTILSLQEEMDEHEKKIIERALRILDGNKLEC 532 Query: 487 AKRLGVSHTAIANKLREYGL 506 AK+LGV+ + N+L+ GL Sbjct: 533 AKQLGVTRATLYNRLKRLGL 552 >UniRef50_B4UAL8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Anaeromyxobacter RepID=B4UAL8_ANASK Length = 461 Score = 214 bits (544), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 142/370 (38%), Positives = 202/370 (54%), Gaps = 28/370 (7%) Query: 156 NFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAA--QDVSAFSQIVAVSPKM 213 +FL++ P DE + L + +R RQ+ + + + SA +V S M Sbjct: 102 DFLVKPFPFQQLDEAVERAL--------ANVRTRRQIATLTSDKRGASAVEAVVGSSAAM 153 Query: 214 KHVVEQAQKLAML-SAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVE 272 + V +LA + +LI G++G+GK++ A A H S RA KP L +NCA++PE +E Sbjct: 154 EQVRSMISRLAGSDTTTVLIEGESGSGKEVVARAIHFRSARADKPILQVNCAALPEHLLE 213 Query: 273 SELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGE 325 SELFGH A K+G FE A GGSV+LDEIG++ P QAKLLR L + TFRRVG Sbjct: 214 SELFGHERGAFTDAHAQKRGLFETAEGGSVMLDEIGDLPPGGQAKLLRLLENKTFRRVGG 273 Query: 326 DHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFV 385 E+ DVRVI AT NL E V +G FR DL++RLNV+ + +PPLR+ D+ LT FV Sbjct: 274 VQELRADVRVIAATNVNLEERVAEGRFRADLFFRLNVVRIVVPPLREHLDDVPILTAHFV 333 Query: 386 ARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGY-ELRPQDILLPD 444 ARF E +A +L Y WPGNVR+L+N I RA G E+RP+ LP Sbjct: 334 ARFDQEMKRQVKGVAPAAMELLRAYHWPGNVRELRNVIERAFILHAGADEIRPEH--LPP 391 Query: 445 YDAATVAVGEDAMEGSLDEITSR------FERSVLTQ-LYRNYPSTRKLAKRLGVSHTAI 497 A G E + ++T ER ++ + + R + K A+ LGVS + Sbjct: 392 ELRKAAAPGGKRPEKLVPQVTGEGLVLDDVERKLIAEAMERASGNQSKAARLLGVSRDTL 451 Query: 498 ANKLREYGLS 507 +L+++G++ Sbjct: 452 RYRLKKHGMA 461 >UniRef50_B8FD14 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfobacteraceae RepID=B8FD14_DESAA Length = 470 Score = 214 bits (544), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 126/357 (35%), Positives = 201/357 (56%), Gaps = 13/357 (3%) Query: 164 VYLQDENDQHVLTGAVVMLRSTIRMGR-QLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQK 222 V +D D L + +L S +++ +L N+ + + + I+ VS +K + E+A + Sbjct: 112 VLFKDVKDLSRLASELKVLESKVKLYEAELLNLRSTRYT-LNSIIGVSGPIKELKEEALR 170 Query: 223 LAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA--- 279 A P+LI G++GTGK+LFA A H AS R P++ +NCA+IP+D +E+ELFG+ Sbjct: 171 AAATHYPVLICGESGTGKELFAQAIHHASNRKLFPFVRINCAAIPKDLLEAELFGYEKGA 230 Query: 280 -----PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVR 334 +GK G FE A+ G++ LDE+G++ MQ KLLR L D F RVG + + D+R Sbjct: 231 FTGARSDGKPGKFELAHQGTLFLDEVGDLPLEMQPKLLRALEDREFERVGGNKIIRSDLR 290 Query: 335 VICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGV 394 +I AT ++L +++ G FR+DL+YRLNV+ +N+PPLR DI+P E + + A E + Sbjct: 291 IIAATNQDLDQMMADGRFRKDLFYRLNVIPINIPPLRKRKNDIIPSAEYILRQLAAEANL 350 Query: 395 PRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGE 454 P + L + WPGNVR+L N + R L+ L+G + D LP Y Sbjct: 351 PDISMDKSAQAALRNHQWPGNVRELSNVLERTLSALNGRTIGLSD--LPFYLHQDRKPLS 408 Query: 455 DAMEGSLDEITSRFER-SVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKK 510 + SL + +R ER S+ + L + + K A+ LG+ T + K+++Y + +K Sbjct: 409 NGGSSSLKAVQARIERESICSALEQTGYNKVKAAELLGIHRTLLYKKIKKYAIPLEK 465 >UniRef50_B0K4W6 GAF modulated sigma54 specific transcriptional regulator, Fis family n=5 Tax=Thermoanaerobacteraceae RepID=B0K4W6_THEPX Length = 576 Score = 213 bits (543), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 140/439 (31%), Positives = 233/439 (53%), Gaps = 25/439 (5%) Query: 85 LLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQD 144 LE +P+L +D ++ N AS ++ G K + L A ++ + + +L Q Sbjct: 149 FLENNSDPLLVMDNTGRLIKVNYASEKVLGWKKEDLIGRRADEIFDNSQEILFLIKARQS 208 Query: 145 SHNEHVVINGQNFLM----EITPVY-LQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQD 199 + +++ + ++ +++P+ +EN A++ L+ + G Q + Sbjct: 209 IKGKEILVQSKKGILRCSADVSPISGYYNEN-----VAALIALK--MHEGSQFYISSPPA 261 Query: 200 VSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYL 259 + F I+ P ++ + AQ A AP+LI G+TGTGKDLFA A H+AS R G P++ Sbjct: 262 LKGFEVILGNHPCLRESIRLAQIAANSDAPVLILGETGTGKDLFARAIHEASGRKG-PFV 320 Query: 260 ALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKL 311 A+N ++P + + SELFG+ PEGK G FEQA GG++ LDEIG+M +Q L Sbjct: 321 AINGGALPRELIGSELFGYVGGAFTGARPEGKPGKFEQAQGGTLFLDEIGDMPMDIQVYL 380 Query: 312 LRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLR 371 LR L + R+G E+ +DVR+I AT +L +LV++ FREDLY+RL VLT++L PLR Sbjct: 381 LRVLEEKKVVRIGGHKEIPLDVRIIAATNSDLTKLVREKKFREDLYFRLRVLTIHLCPLR 440 Query: 372 DCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLD 431 + DI L + F+ +F+ + G + + +L Y WPGN+R+L+N A+ + Sbjct: 441 ERKSDIPLLFQHFIHKFSQKLGKNITNIDPSIWPLLGNYDWPGNIRELRNVAEWAVNIAE 500 Query: 432 GYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPST-RKLAKRL 490 + LP Y + + + E++ S + E+ ++QL +Y K+AK L Sbjct: 501 VNTISVSH--LPSYLSGSQTIRENSNSFSSTSLI-ELEKQEISQLLEHYGGNITKVAKAL 557 Query: 491 GVSHTAIANKLREYGLSQK 509 G++ + KL +YGL + Sbjct: 558 GIARNTLYRKLYKYGLKTR 576 >UniRef50_A5D2K0 Transcriptional regulator n=2 Tax=Clostridia RepID=A5D2K0_PELTS Length = 568 Score = 213 bits (543), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 114/317 (35%), Positives = 183/317 (57%), Gaps = 8/317 (2%) Query: 202 AFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLAL 261 +F I+ SP+++ + A+K A ++ +LI G++GTGK+L A+A H AS R P++ + Sbjct: 253 SFDDIIGDSPELRKCITLAEKSAQSNSTVLILGESGTGKELLAHAIHAASMRRENPFIKV 312 Query: 262 NCASIPEDAVESELFGHAP-------EGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRF 314 NCA+IP+ +ESE FG+A + K G FE A+GG++ LDEIG+M+ +QAKLLR Sbjct: 313 NCAAIPDTLLESEFFGYAKGAFTGAVKSKIGKFELAHGGTIFLDEIGDMNLLLQAKLLRV 372 Query: 315 LNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCP 374 L + F RVG + + VDVRVI AT +NL EL+++G FREDLYYRLNV+ + +PPLR Sbjct: 373 LQEMEFERVGGNQTIKVDVRVIAATNRNLRELIRQGRFREDLYYRLNVVEITMPPLRARK 432 Query: 375 QDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYE 434 +D+ L + + G ++ D VL Y WPGNVR+L+N I R + D E Sbjct: 433 EDLPALVSHLITSLNRKLGKNVKGISKDAEEVLFSYDWPGNVRELENVIERVMVTAD-EE 491 Query: 435 LRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSH 494 + + + + ++ D ++++ R +++ R+ A+ L +S Sbjct: 492 ILTKKNFIQHVNQFRMSSERDVDLMPIEQMEEMLIRKAISKFGNTVEGKRRAAQALNISL 551 Query: 495 TAIANKLREYGLSQKKN 511 + NKL++ ++ K+ Sbjct: 552 ATLYNKLKKIKVANYKS 568 >UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYM7_9BACT Length = 469 Score = 213 bits (543), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 120/330 (36%), Positives = 190/330 (57%), Gaps = 34/330 (10%) Query: 206 IVAVSPKMKHVVEQAQKLAMLSAP-LLITGDTGTGKDLFAYACHQASPRAGKPYLALNCA 264 I+ SP+MK + +++A S+ +LI G++GTGK+L A A H+ S R ++ +NCA Sbjct: 147 IIGNSPQMKEIYSLIKQVAKSSSTTVLIQGESGTGKELVARAVHRLSARKSGRFVDINCA 206 Query: 265 SIPEDAVESELFGH--------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLN 316 ++ E +E+ELFG+ A GK G FE A+ G+V LDEIGEM +QAKLLR L Sbjct: 207 ALTESLLEAELFGYEKGAFTGAATAGKPGLFEIADKGTVFLDEIGEMGVLLQAKLLRILQ 266 Query: 317 DGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQD 376 + F+RVG ++ +DVR+I +T +NL E + G FR+DLYYRL VL + +PPLR+ +D Sbjct: 267 ERQFKRVGGIQDIKIDVRIIASTNRNLEEEIASGNFRKDLYYRLKVLPIYVPPLRERRED 326 Query: 377 IMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELR 436 IM L + F+ ++ +E G + D +L Y WPGN+R+LKN + R + +G L Sbjct: 327 IMLLVKYFIHKYNNEFGKNICDIPPDTERILLEYGWPGNIRELKNVVERGVLIANGSALS 386 Query: 437 PQDILLPDYDAATVAVGED--------AMEGSLDEITSR---------FERSVLTQLYRN 479 P+ + A ++VG+ ++G+ D ++S E+ + + + Sbjct: 387 PKYV-------ANISVGKKESESLAGITVDGNTDCVSSDGLDARSLAFMEKQHIENVLKE 439 Query: 480 YPSTRKLAKR-LGVSHTAIANKLREYGLSQ 508 R A R LG++ T + NK++EYG++Q Sbjct: 440 TSWRRTEAARVLGINRTTLYNKIKEYGIAQ 469 >UniRef50_B8FWA2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FWA2_DESHD Length = 597 Score = 213 bits (543), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 127/333 (38%), Positives = 193/333 (57%), Gaps = 28/333 (8%) Query: 193 QNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASP 252 +N AQD+ +VA SP+MK + ++ +A ++ +LITG++GTGK+ A+A H S Sbjct: 274 KNRTAQDI--MKDMVAESPQMKKLKDEISIVATSTSTVLITGESGTGKEGVAHAIHLGSD 331 Query: 253 RAGKPYLALNCASIPEDAVESELFGH--------APEGKKGFFEQANGGSVLLDEIGEMS 304 R P++ +NCASIPE +ESE+FG+ A GK G E+A+GG++ LDEIGEM Sbjct: 332 RGKGPFIKVNCASIPESLMESEMFGYVGGAFTGAAKNGKPGRIERADGGTLFLDEIGEMP 391 Query: 305 PRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLT 364 +QAKLLR L D R+G + V++R++ AT K L + KG FR+DLYYRLNV+ Sbjct: 392 LALQAKLLRVLQDREIERLGSTETIKVNIRILAATNKKLSNAIAKGEFRQDLYYRLNVIN 451 Query: 365 LNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIY 424 L+LPPLR+ +DI PLT F+++F D + + L +Y+WPGN+R+L+N + Sbjct: 452 LHLPPLRERLEDIEPLTHFFISKFNDILKANVSGITPNAMATLLQYSWPGNIRELENVVE 511 Query: 425 RAL--TQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSR-------FERSVL-T 474 RA+ T+ EL I LP + G A+ +++ T R ER ++ Sbjct: 512 RAVNYTRSGLIEL----IHLPHQ----IISGNTALGQVMNKKTIRHQDRLGQIERDMIAA 563 Query: 475 QLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 L + + K AK L +S + + +KL +Y L+ Sbjct: 564 ALEKAGGNKTKAAKLLNLSRSRLYDKLNKYDLN 596 >UniRef50_D2L4Q3 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Desulfovibrio RepID=D2L4Q3_9DELT Length = 453 Score = 213 bits (543), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 125/315 (39%), Positives = 178/315 (56%), Gaps = 15/315 (4%) Query: 204 SQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNC 263 S +V S M+ + +++A +L+ G++GTGK+L A H+ SPR P + ++C Sbjct: 141 SGLVGQSEAMRDLAAMIERVAPRDVNVLVLGESGTGKELVANLIHRRSPRKNGPLVTVDC 200 Query: 264 ASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLN 316 S P +ESELFGH A + KKG EQAN G++ LDEIG +S MQ +LLRFL Sbjct: 201 GSTPAGLLESELFGHVKGSFTHAVKDKKGLIEQANQGTLFLDEIGNISTEMQIRLLRFLE 260 Query: 317 DGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQD 376 + RR+G+ E+ VD RVI AT ++ E V +G+FREDL YRL V+T+N+PPLR+ +D Sbjct: 261 NHRIRRIGDVREIQVDCRVIAATNADIFEQVAEGVFREDLLYRLKVVTINVPPLRERRED 320 Query: 377 IMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELR 436 I L E F +F QG+P + A+ L Y WPGNVRQL+NA+ + G L Sbjct: 321 IPILAEHFTRQFCAAQGMPPVTVPAETMAYLMAYPWPGNVRQLRNALEAGVVLCTGGVLA 380 Query: 437 PQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKR-LGVSHT 495 P+D+ LP GE SLDE E++ + + +K A LGVS Sbjct: 381 PKDLQLPLAGKGPDRAGESL---SLDE----SEKTAIVRALEQANWVQKAAAPLLGVSRR 433 Query: 496 AIANKLREYGLSQKK 510 A+ K+++YG+ K Sbjct: 434 ALNYKIQKYGIEIPK 448 >UniRef50_C6NRF1 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NRF1_9GAMM Length = 466 Score = 213 bits (543), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 117/311 (37%), Positives = 183/311 (58%), Gaps = 15/311 (4%) Query: 205 QIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCA 264 ++V SP M+ + + +K+A AP+LITG++GTGK+L A A H+ S R P++A+NC Sbjct: 157 EMVGASPVMQQIYQDIRKVASTDAPVLITGESGTGKELAAQAIHERSSRKDGPFVAVNCG 216 Query: 265 SIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLND 317 ++P + + SELFGH A E K G E A+GG++ LDEIG++ +Q LLRFL + Sbjct: 217 ALPANLIHSELFGHEKGSFTGAHERKIGRIESASGGTLFLDEIGDLPLDLQVNLLRFLQE 276 Query: 318 GTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDI 377 T +RVG ++ VDVRV+ AT +L + +Q G FR+DLYYRLNVL + +PPLRD DI Sbjct: 277 QTIQRVGGREDIAVDVRVLAATHVDLEKAIQLGNFRQDLYYRLNVLQIRMPPLRDREGDI 336 Query: 378 MPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRP 437 L + RFADE+G + D ++ Y WPGN+R+L N + RA+ D + + Sbjct: 337 PLLAQYVFNRFADERGQRVKGFSEDALQIMANYDWPGNIRELINRVRRAMVMCDKFLITA 396 Query: 438 QDILLPDYDAATVAVGEDAMEGSLDEITSRFER-SVLTQLYRNYPSTRKLAKRLGVSHTA 496 D+ L + + V SL++ ER ++ + L N S + A++L +S + Sbjct: 397 ADLGLERRRNSRIRV-------SLNQARDLAERDAIRSALADNLGSVTRAAEQLQISRVS 449 Query: 497 IANKLREYGLS 507 + + ++G++ Sbjct: 450 LYRLMEKHGIT 460 >UniRef50_A7GID7 Sigma-54 dependent transcriptional regulator n=10 Tax=Clostridium RepID=A7GID7_CLOBL Length = 542 Score = 213 bits (543), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 123/357 (34%), Positives = 196/357 (54%), Gaps = 13/357 (3%) Query: 161 ITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQA 220 I + +D ND + L G + ++T + + F IV S + ++ A Sbjct: 187 IGKIMFKDVNDFYFLYGKLNKSKNTHKCYDNKSEKNRRAKYFFKDIVGDSSESNNIKSLA 246 Query: 221 QKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAP 280 +K A ++ +LI G++GTGK+L+A++ H AS R P++ +NC +IP + +ESELFG+ Sbjct: 247 KKSANTNSNVLIVGESGTGKELYAHSIHNASNRRLGPFIKINCGAIPAELLESELFGYED 306 Query: 281 EGKKG--------FFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVD 332 G FE ANGG++ LDEIG+M MQ KLLR + + +VG + +D Sbjct: 307 GAFTGAKKGGKKGKFELANGGTIFLDEIGDMPMCMQVKLLRVIQEREVEKVGGNILKKID 366 Query: 333 VRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQ 392 VR+I AT KNL +LV+K FREDLYYRLNV+ +N+P LR+ +DI+ +++ V + + Sbjct: 367 VRIIAATNKNLEKLVEKNKFREDLYYRLNVIRINVPSLRERKEDILLISDFLVKKVSHRL 426 Query: 393 GVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDG-YELRPQDILLPDYDAATVA 451 G+ ++ + L Y WPGN+R+L+N I R+ LD + ++P+ LP + Sbjct: 427 GICIKGISKEAKEYLCNYNWPGNIRELENVIERSANLLDSDFVIKPKH--LPKEILKSYI 484 Query: 452 VGEDAMEGS-LDEITSRFERSVLTQ-LYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 V E L +I S E+ V+ L +N + K +K LG+S + K+ EY + Sbjct: 485 VKAPTKENKYLKDIISEVEKEVICNCLEKNNGNKNKTSKILGISRANLYKKISEYNI 541 >UniRef50_P09434 Nif-specific regulatory protein n=7 Tax=Rhodobacter RepID=NIFA_RHOCA Length = 579 Score = 213 bits (543), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 115/254 (45%), Positives = 157/254 (61%), Gaps = 12/254 (4%) Query: 190 RQLQNVAAQDVSA----FSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAY 245 R LQ V Q A IV SP + VV Q +++A P+L+ G++GTGK+LFA Sbjct: 206 RMLQTVTEQRGPAAPVSLDGIVGSSPAIAEVVAQIKRVASTRMPVLLRGESGTGKELFAR 265 Query: 246 ACHQASPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLD 298 A H SPRA P++ +NCA++ E +ESELFGH A KKG FE A+GG++ LD Sbjct: 266 AVHAQSPRAKGPFIRVNCAALSETLLESELFGHEKGAFTGATALKKGRFELADGGTLFLD 325 Query: 299 EIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYY 358 EIGE+SP Q+KLLR L +G F RVG + VD R++ AT ++L + V +G FR DLY+ Sbjct: 326 EIGEISPAFQSKLLRVLQEGEFERVGGAKTIKVDTRIVAATNRDLEDAVARGQFRADLYF 385 Query: 359 RLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQ 418 R+ V+ + LPPLR+ DI PL +LF+ RF ++Q K AAD + R +PGNVR+ Sbjct: 386 RICVVPIVLPPLRNRKSDIKPLAQLFLDRF-NKQNATNVKFAADAFDQICRCQFPGNVRE 444 Query: 419 LKNAIYRALTQLDG 432 L+N + RA DG Sbjct: 445 LENCVNRAAALSDG 458 >UniRef50_A9F816 Protein kinase n=12 Tax=Bacteria RepID=A9F816_SORC5 Length = 1673 Score = 213 bits (542), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 124/332 (37%), Positives = 184/332 (55%), Gaps = 15/332 (4%) Query: 187 RMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYA 246 R+ +L+ A F +I S M+ V+ +++A + +TG++GTGK+L A A Sbjct: 1349 RLSHELERTRADARRDFPEIAGRSAPMRAVLALCERVAESDVTVTVTGESGTGKELVARA 1408 Query: 247 CHQASPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDE 299 H PR P++A+NCA++PE +ESELFGH A G F A GG++ LDE Sbjct: 1409 IHAGGPRRDGPFVAVNCAALPEALLESELFGHVKGAFTGAVRDHGGLFLSARGGTLFLDE 1468 Query: 300 IGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHV-DVRVICATQKNLVELVQKGMFREDLYY 358 +GE+ +QAKLLR L + + R VG D V V DVRV+CAT ++L + V +G FREDLYY Sbjct: 1469 LGEVPLGVQAKLLRALQERSIRPVGSDRSVSVADVRVVCATNRDLRDEVARGRFREDLYY 1528 Query: 359 RLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQ 418 R++V+ + LPPLRD P+DI + + V + A QG P +L+ L+ Y WPGNVRQ Sbjct: 1529 RVSVIEIRLPPLRDRPEDIPAIAQAIVEKLAARQGRPAFRLSRGALRRLSSYGWPGNVRQ 1588 Query: 419 LKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYR 478 L+N + RA G E+ DI LP A +G+ +E + L Sbjct: 1589 LENVLSRACVLSPGPEIGAADIQLPAAAPAPRGRSRAEHQGAEEE-------RIRAALDL 1641 Query: 479 NYPSTRKLAKRLGVSHTAIANKLREYGLSQKK 510 + + ++++ LG+ + KL YGL +K+ Sbjct: 1642 SRWNVSEVSRSLGIPRMTLYRKLARYGLLRKE 1673 >UniRef50_A2SP83 Sigma-54 dependent transcriptional activator n=4 Tax=Burkholderiales RepID=A2SP83_METPP Length = 664 Score = 213 bits (542), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 117/331 (35%), Positives = 178/331 (53%), Gaps = 20/331 (6%) Query: 194 NVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPR 253 A + V F + + P + + + Q++A +LI G+TGTGK+L A H SPR Sbjct: 328 TTAIEQVGRFGEFASRDPDTRRMFDDLQRIAAAEVNVLIIGETGTGKELLARQVHACSPR 387 Query: 254 AGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGEMSP 305 +PYL +NC +I E +ES FG+ P G+ G+FE A GG++ LDE+GE+ P Sbjct: 388 HNEPYLPVNCGAISEHLMESTFFGYVKGAFSGADPRGRAGYFESAKGGTLFLDEVGELPP 447 Query: 306 RMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTL 365 MQ LLR L DG+F+RVG + R+I AT +NL EL+ +G FR+DLY+RL V+ Sbjct: 448 AMQVALLRVLEDGSFQRVGSCETIRASCRIIAATHRNLEELIAQGRFRQDLYFRLKVVQR 507 Query: 366 NLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYR 425 + PLR+ P DI L + F + + A+ L RY WPGN R+++NAI Sbjct: 508 TIKPLRERPCDIDVLVDQFAEVMRRKHRLVAVNFTAEARDALKRYHWPGNAREVRNAIEA 567 Query: 426 ALTQLD---GYELRPQDILL---PDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRN 479 AL D G E P ++L P+ D + AV ++M D +ER ++ + R Sbjct: 568 ALLCSDGDIGLECLPPEVLRRAEPE-DRSASAVPIESMASVRD-----YERQIIVGMLRK 621 Query: 480 YPSTRKLAKRLGVSHTAIANKLREYGLSQKK 510 Y ++A+ LG++ + + K E ++Q + Sbjct: 622 YRKVNQVAQALGIARSTLYRKFAELNINQSE 652 >UniRef50_Q3A103 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A103_PELCD Length = 467 Score = 213 bits (542), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 113/273 (41%), Positives = 166/273 (60%), Gaps = 10/273 (3%) Query: 165 YLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQ--IVAVSPKMKHVVEQAQK 222 YL+ L V IR+ ++L + +Q + Q IVA S +M V+E K Sbjct: 112 YLRKPISAEELAAVVQRTLENIRLRKELACLRSQKGGCYDQPSIVACSREMGQVLEMVDK 171 Query: 223 LAML-SAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH--- 278 +A +A + I G++GTGK+L A A H S RA +P++A+NCA++P+ +ESEL GH Sbjct: 172 IASSDAATVFIQGESGTGKELVARAIHYQSARASQPFMAINCAAVPQTLLESELMGHEKG 231 Query: 279 ----APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVR 334 A KKG FE A+GG+V LDEIG+M P MQAKLLR L + TFRRVG ++ VDVR Sbjct: 232 AFTDAKNVKKGLFELADGGTVFLDEIGDMDPAMQAKLLRVLEERTFRRVGGTRDIKVDVR 291 Query: 335 VICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGV 394 ++ AT ++L + ++ FR DLYYR+ V+ + +PPLR+ DI+PL E F+ +F E Sbjct: 292 IVSATNRDLHKAMEDKSFRPDLYYRIGVIPVQIPPLRERRDDILPLAEFFIRQFNREFNK 351 Query: 395 PRPKLAADLNTVLTRYAWPGNVRQLKNAIYRAL 427 ++ +L Y+WPGN+R+L+N I R++ Sbjct: 352 KVRGISRMAQKILLEYSWPGNIRELRNVIERSV 384 >UniRef50_A9ET26 Transcriptional regulator n=2 Tax=Myxococcales RepID=A9ET26_SORC5 Length = 648 Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 119/303 (39%), Positives = 177/303 (58%), Gaps = 16/303 (5%) Query: 203 FSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALN 262 F +I+ P M V + QK+A +LITG+TGTGK+L A H+ SPR G P++ +N Sbjct: 329 FGEIIGACPSMLEVFRKLQKVAATDISVLITGETGTGKELIARELHRRSPRDGGPFVTIN 388 Query: 263 CASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFL 315 C +IPE+ +ESELFGH A + G F+ A+ G++ LDEIGE+ +Q KLLR L Sbjct: 389 CGAIPENLIESELFGHVKGAFTGAIASRPGKFQIADKGTLFLDEIGELPLNLQVKLLRAL 448 Query: 316 NDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQ 375 + RVG+ VD+R++ AT +NL E ++ G FREDLYYRLNV+ L LPPLR+ Sbjct: 449 QERVVFRVGDSKPEKVDIRIVAATNRNLEEEIRAGNFREDLYYRLNVVNLWLPPLRERGD 508 Query: 376 DIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYEL 435 D++ + ++ ++++ADE G + + + +Y WPGN+RQL+N I +AL D L Sbjct: 509 DVLIIAKVLLSKYADELGSAVRGFSPAALSAIKKYPWPGNIRQLENRIKKALVLCDQALL 568 Query: 436 RPQDI-LLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSH 494 +D+ L P + A + +E + +E R+ VL L RN + + A+ LGV Sbjct: 569 AVEDLDLGPGAETAIM-----PLEKAKEEFQRRY---VLEALERNNGNRTQTARDLGVDP 620 Query: 495 TAI 497 I Sbjct: 621 RTI 623 >UniRef50_A0LL20 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LL20_SYNFM Length = 441 Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 128/306 (41%), Positives = 179/306 (58%), Gaps = 15/306 (4%) Query: 206 IVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCAS 265 I+ S M V E + A SA +LI G++GTGK+L A A H S RAG P++ +NC Sbjct: 142 IIGESRAMMQVYEAIEHAASSSATVLIQGESGTGKELIARAIHYGSRRAGFPFVPVNCGG 201 Query: 266 IPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDG 318 IPE +ESELFG+ A + GFF+ A+ G++LLDEI E S MQ KLLR L +G Sbjct: 202 IPEPLLESELFGYTKGAFTGAAGSRAGFFQTADRGTILLDEISEASLPMQIKLLRVLQEG 261 Query: 319 TFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIM 378 +G V++R++ AT + L ELV++G+FREDL+YRLNV+T++ PPLRD DI+ Sbjct: 262 EICMLGSSKPRKVNIRIVAATNRVLHELVRQGLFREDLFYRLNVITIDAPPLRDRGDDIV 321 Query: 379 PLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQ 438 L FV F++ G P+L+ L +L Y WPGNVR+L+N I+R L+ L Sbjct: 322 LLVNHFVKTFSERYGRTPPRLSEALLGILRAYHWPGNVRELENVIHRLLSMPSSTTLDIP 381 Query: 439 DILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKR-LGVSHTAI 497 D LP + + AVGE ++ +L E+ + R VL + N + LA R LGV + Sbjct: 382 D--LPPFMRFS-AVGEGSLNRTLAEVEAEHVRRVLDSVGGN----KTLAARILGVDRKTL 434 Query: 498 ANKLRE 503 KLR+ Sbjct: 435 RAKLRK 440 >UniRef50_A7JYI2 Transcriptional regulator n=10 Tax=Vibrionaceae RepID=A7JYI2_VIBSE Length = 543 Score = 213 bits (541), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 127/335 (37%), Positives = 194/335 (57%), Gaps = 30/335 (8%) Query: 202 AFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLAL 261 A+ +A S +M +V+ + K+ L +L+ G+TG GK++ A H+ S R+ +P + Sbjct: 207 AYQGPIAESEEMLNVLNRLDKVLSLPVDVLLRGETGAGKEVIAKYIHENSNRSEQPLIVQ 266 Query: 262 NCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRF 314 NCA+IPE +ESELFGH A + K G FE ANGG++ LDEIG+M +QAKLLR Sbjct: 267 NCAAIPEQLLESELFGHKKGSFTGADKDKVGLFEAANGGTLFLDEIGDMPMLLQAKLLRV 326 Query: 315 LNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCP 374 L + R +G E+ VDVRVI AT NL++ ++ G FR DL+YRLNV + LPPLR Sbjct: 327 LQERKVRPIGTSKEIEVDVRVIAATHCNLMQQIRDGGFRADLFYRLNVFPITLPPLRARK 386 Query: 375 QDIMPLTELFVARFADEQGVPR-PKLAADLNTVLTRYAWPGNVRQLKNAIYRA------- 426 DI+PL E FV + G+P+ P L+A++ L Y +PGNVR+LKN I R+ Sbjct: 387 SDIIPLAEHFVQHTTNTLGLPQAPGLSANVRKQLLAYQYPGNVRELKNIIERSVLLSDFE 446 Query: 427 -LTQLDGYELRPQDILLPDYDAATVAVGEDAME-----------GSLDEITSRFERSVLT 474 +T ++ E P+ + D AA+ + A E SL ++ S++ER+V+ Sbjct: 447 TITHIEFGEQIPESVPSIDMKAASPTPEQPAYEQQAQADLEDVSKSLKDVVSQYERTVII 506 Query: 475 QLYR--NYPSTRKLAKRLGVSHTAIANKLREYGLS 507 N+ T+K A++L + + + +K+++Y +S Sbjct: 507 DCLNACNW-HTKKAAEQLALPMSTLNHKMKKYDIS 540 >UniRef50_C0GP34 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GP34_9DELT Length = 459 Score = 213 bits (541), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 115/319 (36%), Positives = 188/319 (58%), Gaps = 21/319 (6%) Query: 203 FSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALN 262 +IVA +P M+ ++ +K A + LL+TG+TGTGK A A H SPR +P++ +N Sbjct: 140 LDRIVASTPAMQDILSWTRKYAQTESNLLLTGETGTGKSFLAGAVHFNSPRKKRPFIKIN 199 Query: 263 CASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFL 315 CA++PE+ +ESELFGH A + + G EQA GG+V LDEIGEM+P +QAK L+ + Sbjct: 200 CANLPENLLESELFGHEKGAFTDATQTRVGRLEQAAGGTVFLDEIGEMTPALQAKFLQVV 259 Query: 316 NDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQ 375 + F+R+G + ++ D+R+I AT +NL ++++ FR DLYYRLN+L L+LPPLR+ Q Sbjct: 260 EEKNFQRLGGNRTIYSDIRIIVATNRNLEQMMEASDFRSDLYYRLNILKLHLPPLRERKQ 319 Query: 376 DIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYEL 435 I PLT + + R + ++ + +L Y WPGN+R+L N + RA+ L Sbjct: 320 CIEPLTRMLLERICRQLRKKMMDISPEALEILGAYHWPGNIRELSNVLERAIL------L 373 Query: 436 RPQDILLPD--YDAATVAVGEDAMEGSLDEITSRFE----RSVLTQLYRNYPSTRKLAKR 489 D++ + + + + + E++ + S SR E RS++ L N + A + Sbjct: 374 EHSDVITAESIHLNSGLHLQENSYQNSPS--ASRLENTEYRSIIQALEDNLWVQKHAAAQ 431 Query: 490 LGVSHTAIANKLREYGLSQ 508 LG+S ++ K+++ G++ Sbjct: 432 LGISPRSLNYKIKKLGITH 450 >UniRef50_Q2LQP1 Transcrption factor sigma 54 type n=4 Tax=Deltaproteobacteria RepID=Q2LQP1_SYNAS Length = 555 Score = 212 bits (540), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 138/431 (32%), Positives = 216/431 (50%), Gaps = 25/431 (5%) Query: 96 VDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWL-----ESEPQDSHNE-H 149 +D K KV M +PA+ + FG + + +QL G + + E D H E Sbjct: 121 IDTKGKVTMFSPANEKWFGLESGGGMGLSLSQLAPGTHLTKVARTGVGERAVVDLHGETK 180 Query: 150 VVIN-----GQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFS 204 + IN + + Q L V + + L + + +F Sbjct: 181 ITINLPVRKDNRVIGAFGRILFQSPEQLEKLADRVRAMERKVERYETLLDEMRRHRFSFE 240 Query: 205 QIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCA 264 I+ +P M+ ++EQA+++A SA +LI G++GTGK+LFA A H+AS R P++A+NC Sbjct: 241 NILTQNPDMQRIIEQARRIAASSATVLILGESGTGKELFAQALHEASHRRKGPFVAINCG 300 Query: 265 SIPEDAVESELFGH--------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLN 316 +IP +ESELFG+ + +GK G FE A G++ LDEIGE+ QAKLLR L Sbjct: 301 AIPHTLIESELFGYEEGAFSGASKKGKPGKFELACDGTLFLDEIGELPIDSQAKLLRVLE 360 Query: 317 DGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQD 376 + R+G + VD R++ AT ++L L G FR DL+YR+N + +PPLR D Sbjct: 361 ERKIDRLGGTAPIAVDFRLVVATNRDLTALANSGKFRSDLFYRINEFPIEIPPLRQRLDD 420 Query: 377 IMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELR 436 I L E F+ + ++G+ PK + + VL Y WPGNVR+L++ I + + G + Sbjct: 421 IPLLAEHFLTKACQQEGLAMPKFSEEAIKVLMSYEWPGNVRELRSLIRQMAWKFQGMTVE 480 Query: 437 PQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKR-LGVSHT 495 ++ + V M G+L+E +R ER+ + + R LA R LG+ T Sbjct: 481 LHNLPQAFHKERKV-----TMSGTLEEQLARAERNAIETALQTSNGNRALAARMLGIHRT 535 Query: 496 AIANKLREYGL 506 A+ K+ G+ Sbjct: 536 ALYKKMNRLGV 546 >UniRef50_C1SMK9 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SMK9_9BACT Length = 535 Score = 212 bits (540), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 118/311 (37%), Positives = 174/311 (55%), Gaps = 20/311 (6%) Query: 206 IVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCAS 265 +V S KM+ V + A + A ++ +LI G++G GK++ A H SP + KP++A+NC + Sbjct: 235 MVVRSKKMQEVTDLAHRAARVNTTILICGESGVGKEVLARYIHSKSPDSDKPFVAVNCGA 294 Query: 266 IPEDAVESELFGHAP-------EGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDG 318 E +ESELFGHA + KG FE+A GG++ LDEIGE S MQ KLLR + + Sbjct: 295 FSESLLESELFGHAKGSFTGAEKEHKGLFEEAEGGTLFLDEIGETSKNMQVKLLRVIQEK 354 Query: 319 TFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIM 378 RRVGE+ +++R+I AT KNL + VQ+G FR+DL+YRLNV+ + +PPL +DI+ Sbjct: 355 EIRRVGENQPRKINLRIISATNKNLEKEVQEGNFRKDLFYRLNVINIKIPPLCQRTEDIL 414 Query: 379 PLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQ 438 PL F+ A+E V +A + L RY WPGNVR+L N I+RA D + Sbjct: 415 PLAHCFIKSAAEEMNVQVTGIAPSASEALLRYNWPGNVRELHNVIHRAAALADSSMIEEN 474 Query: 439 DI---LLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHT 495 D+ LL A + + SL E+ R+ L N ++ A+ L + Sbjct: 475 DLPPELLTSCSAPSTPI-------SLAEMEKEHIRNCLII---NNGDKKRTAQTLNIGIA 524 Query: 496 AIANKLREYGL 506 + K++EY L Sbjct: 525 TLYRKIKEYQL 535 >UniRef50_A7GG75 Sensory box sigma-54 dependent transcriptional regulator n=10 Tax=Clostridium RepID=A7GG75_CLOBL Length = 584 Score = 212 bits (539), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 114/316 (36%), Positives = 183/316 (57%), Gaps = 14/316 (4%) Query: 202 AFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLAL 261 +FS I+ S K+ + A+K+A SA +LITG++GTGK++FA A H+AS R G ++A+ Sbjct: 271 SFSSIIGKSQKIIENIAIAKKVAPTSASVLITGESGTGKEVFAKAIHKASGRTGN-FVAI 329 Query: 262 NCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLR 313 NC++IPE+ ESELFG+ EGK G FE AN G++ LDEIG+M MQAKLLR Sbjct: 330 NCSAIPENLFESELFGYVGGTFTGSLKEGKIGKFEFANNGTLFLDEIGDMPLSMQAKLLR 389 Query: 314 FLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDC 373 L DG R+G V+ R++ AT ++L ++++ FREDL+YR V+ + LPPLR+ Sbjct: 390 VLQDGVVYRIGSQKGTKVNCRILAATNRDLQSMIKENTFREDLFYRFAVVHIELPPLRER 449 Query: 374 PQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGY 433 DI +LF+ + ++++G+ + ++ +L Y W GN+RQLKN + R + Sbjct: 450 RDDIKDFIDLFINQISEKEGIKINTIDKEVYDILCSYKWEGNIRQLKNVVERMVVLSTNG 509 Query: 434 ELRPQDILLPDYDAATVA--VGEDAMEGSLDEITSRFERSVLTQLYR-NYPSTRKLAKRL 490 E+ + P++ V GE L+E+ E+ ++ ++ + +K A+ L Sbjct: 510 EVTISSV--PNHIVQDVEEIEGESHHRYDLNEVVKNTEKKIIKEVMEITKGNKKKAAEIL 567 Query: 491 GVSHTAIANKLREYGL 506 + + + KL +Y L Sbjct: 568 NIKRSTLYYKLNQYDL 583 >UniRef50_A5G7F8 Two component, sigma-54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5G7F8_GEOUR Length = 457 Score = 212 bits (539), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 126/331 (38%), Positives = 194/331 (58%), Gaps = 19/331 (5%) Query: 191 QLQNVAAQ-DVSAFSQ--IVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYAC 247 +L+N+ + ++S Q IV S ++ V+E ++ +LI G++G GK+LFA A Sbjct: 131 RLENINLKLEISKLDQHRIVGKSQVIQKVLETVRRWGATDEHVLICGESGAGKELFARAV 190 Query: 248 HQASPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEI 300 H AS RA KP++ +NC + + ESELFGH A +G+ G FE A+ G++ +DEI Sbjct: 191 HDASRRANKPFVTVNCGRLSANTAESELFGHVQGAFTGANKGRAGLFELADTGTLFMDEI 250 Query: 301 GEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRL 360 EM +Q KLLR L GTFRR+G +H++ VDVR + A+ K L + V +G FREDL++R+ Sbjct: 251 SEMPLDVQVKLLRILETGTFRRMGGNHDISVDVRFVFASNKKLEDCVNRGEFREDLFHRI 310 Query: 361 NVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLK 420 N+L +N+PPLR+ P+DI+PL+ F+ + A+E G +++ + L Y+WPGNVR+L+ Sbjct: 311 NLLPINIPPLRERPEDIIPLSYYFL-KSANESGSANWEISEEAMAALCAYSWPGNVRELR 369 Query: 421 NAIYRALTQLDGYELRPQDIL--LPDYDAATVAVG--EDAMEGSLDEITSRFERSVLTQL 476 N I RA + L ++ D+L P A + AV D + L + + + VL +L Sbjct: 370 NTIRRA-SILATDQIISSDLLPFSPPKTAPSFAVTGLPDVLPLPLWVVERDYIQKVLEKL 428 Query: 477 YRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 N K AK L + + KL YGL+ Sbjct: 429 EGN---KSKAAKVLEIDRKTLYTKLERYGLA 456 >UniRef50_A1HLP6 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Firmicutes RepID=A1HLP6_9FIRM Length = 635 Score = 212 bits (539), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 154/475 (32%), Positives = 247/475 (52%), Gaps = 68/475 (14%) Query: 75 SEREHLAL-SALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFN 133 SERE L ++ + + ++++D ++ + NP + ++FG I N Sbjct: 188 SERERAELFRIIVNSSHDGIIAIDDAERITLFNPVAEKVFGIPAAAAVGAKIRDKIPNTN 247 Query: 134 FLRWL-ESEPQDSHNEHV---VINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMG 189 R L + +D ++V VI Q F +++ + GAV R + Sbjct: 248 LPRILRQGGSEDGELQYVGEKVIVTQRFAIKVN----------GRVVGAVANFRDVTELQ 297 Query: 190 RQLQNVAAQDVSA--------FSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKD 241 R L+ + Q + A + I+ S +K ++E+A+K A + A +LI G+TGTGK+ Sbjct: 298 R-LERLVRQKLHAKGLVARIRLADIIGESAALKGLIERARKFAAVDATVLIVGETGTGKE 356 Query: 242 LFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGG 293 + A H AS RA P++A+NCA++PE+ +ESELFG+A GK G FE A+GG Sbjct: 357 MLAQGIHNASHRANGPFVAVNCAALPENLLESELFGYAEGAFTGAKKGGKPGLFELAHGG 416 Query: 294 SVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFR 353 ++ LDEI EM +Q++LLR L + R+G D + VDVR+I A+ +NL LV+KG+FR Sbjct: 417 TIFLDEISEMPLPLQSRLLRVLQEREVLRIGGDRIIPVDVRIIAASNRNLRNLVEKGLFR 476 Query: 354 EDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNT----VLTR 409 +DLYYRL++LTL PPLR+ +DI L F+ + + L +D+++ +L Sbjct: 477 DDLYYRLHLLTLTAPPLRERKEDIPLLVRAFLRKHSHLN-----PLVSDIDSLAVQLLAE 531 Query: 410 YAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEG---------- 459 Y WPGNVR+L+NAI R + L + I+ AA A+ E+ G Sbjct: 532 YEWPGNVRELENAIQRLII------LSEEQII---GKAAVSALLEELQGGQTLPFRGKQQ 582 Query: 460 ---SLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKKN 511 SL ++ +++ +VL + N + AKRLG+ + + KLR G+ + N Sbjct: 583 AAPSLADLEAQYIAAVLAEENNN---KSRAAKRLGIDRSTLWRKLR--GVEKSNN 632 >UniRef50_Q0A8W1 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Proteobacteria RepID=Q0A8W1_ALHEH Length = 473 Score = 212 bits (539), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 130/334 (38%), Positives = 181/334 (54%), Gaps = 36/334 (10%) Query: 199 DVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPY 258 D F +V S M+ + +Q ++LA + P+LI G++G+GK+L A A HQ S RA P+ Sbjct: 141 DEPEFHGMVGNSRAMRVLCDQIKRLARGTGPVLILGESGSGKELVARAIHQESERAAAPF 200 Query: 259 LALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKL 311 A+NCA IP + +ESE FGH A KG F QA+GG++ LDEIGEM +QAKL Sbjct: 201 QAVNCAGIPSELLESEFFGHEAGAFTGAQRAHKGLFRQADGGTLFLDEIGEMPLALQAKL 260 Query: 312 LRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLR 371 LR L DG R VG + VDVRV+CAT +++ E V +G FREDL+YRL TL +PPLR Sbjct: 261 LRVLQDGVIRPVGGQRDYAVDVRVVCATHRDIEERVAEGSFREDLFYRLETFTLQVPPLR 320 Query: 372 DCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTR---YAWPGNVRQLKNAIYRALT 428 D D L F++RFA G R ++ L R Y +PGN+R+L+NA+ RA+T Sbjct: 321 DREGDAELLAMRFLSRFAARLG--REEITGFSGEALQRLRAYDYPGNIRELENAVERAVT 378 Query: 429 QLDGYELR------------PQDILLPDYDAATVAVGEDAMEG---------SLDEITSR 467 DG E+R P + + D A GE ++ +L E+ R Sbjct: 379 FCDGSEIRTEHLPARMRAAGPAGVRTGEGDGAPGVTGEHILQQLVSGGPVLPTLQELERR 438 Query: 468 FERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKL 501 + VL Q+ N R+ A L + + +L Sbjct: 439 YIDYVLAQVDGN---KRRAAAILDIGRRTLYRRL 469 >UniRef50_B5JMU1 Sigma-54 interaction domain family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JMU1_9BACT Length = 539 Score = 212 bits (539), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 116/309 (37%), Positives = 178/309 (57%), Gaps = 11/309 (3%) Query: 206 IVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCAS 265 I+ S M+ V +++A + +LI G++GTGK+L A A H+ S R KP++ NCA+ Sbjct: 227 IIGSSSTMRSVYYHIEQVANSATTVLIRGESGTGKELVAKALHEKSSRRNKPFVKFNCAA 286 Query: 266 IPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDG 318 +P+ +ESELFGH A +KG FE ANGG++ LDEIG++S Q KLLR L + Sbjct: 287 LPDSIIESELFGHEKGAFTGALAMRKGRFESANGGTIFLDEIGDISLSTQVKLLRVLQER 346 Query: 319 TFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIM 378 F RVG VDVRVI AT +NL E+++ G FREDLYYRLNV + +PPLR+ DI+ Sbjct: 347 EFERVGSQETRRVDVRVIAATSRNLEEMMEAGTFREDLYYRLNVFPIYMPPLRERKCDIL 406 Query: 379 PLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQ 438 L + F+ +FA G ++++ +L Y W GNVR+L+N I RA+ G ++ Sbjct: 407 MLADHFIEKFAKRMGRKPIRISSAAIDMLVSYHWAGNVRELENCIERAVLLAKGQSIKAH 466 Query: 439 DILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPST-RKLAKRLGVSHTAI 497 L P + A E + +L++ ER ++ + S + ++RLG++ Sbjct: 467 H-LPPTLQKKSRA--ESSEVATLEDAIQALEREMIVDALKETGSNLAEASRRLGLTERKA 523 Query: 498 ANKLREYGL 506 ++++YG+ Sbjct: 524 GLRVKKYGI 532 >UniRef50_A9G869 Sigma-54 dependent DNA-binding response regulator n=2 Tax=Myxococcales RepID=A9G869_SORC5 Length = 475 Score = 212 bits (539), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 147/362 (40%), Positives = 203/362 (56%), Gaps = 22/362 (6%) Query: 165 YLQDENDQHVLTGAVVMLRSTIRMGRQLQN-----VAAQDVSAFSQIVAVSPKMKHVVEQ 219 YL D VL AVV+ R+ R R LQ ++ +AF ++A P M V+ Sbjct: 102 YLTKPLDFSVL--AVVVERAVER-ARLLQENSRLRERLRERNAFGHVIASHPSMAKVLRL 158 Query: 220 AQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH- 278 +++A A +LI G+TGTGK+L A H+ASPRA P + LNCA++ E +ESELFGH Sbjct: 159 VEQVAPSRASVLIVGETGTGKELIAEMIHRASPRAKAPLVRLNCAALSESLLESELFGHE 218 Query: 279 ------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVD 332 A ++G FEQA+GG++ LDE+ E+ Q KLLRFL + TF RVG + + VD Sbjct: 219 RGAFTGAVGRREGRFEQASGGTLFLDEVSEIPLATQVKLLRFLQERTFERVGGNETLKVD 278 Query: 333 VRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQ 392 VR++ A+ ++L + + +G+FREDLYYRLNV+TL +PPLR+ DI L F+ R+A E Sbjct: 279 VRILAASNRDLRQRIAEGVFREDLYYRLNVVTLEIPPLRERRSDIPELATFFLGRYAQEN 338 Query: 393 GVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDG--YELRPQDILLPDYDAATV 450 G + + LT Y++PGNVR+L+NAI RA DG ELR LP ++ Sbjct: 339 GKRIEGFTDEALSALTSYSFPGNVRELENAIERAAVLCDGARIELRH----LPAQMSSEP 394 Query: 451 AVGEDAMEGSLDEITSRFER-SVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQK 509 A DAM ER ++L L ST K A LG+S I KL EY + Sbjct: 395 AESVDAMPRVPGSTIYDLERYAILRTLEACKGSTSKAATILGISPRKIQYKLHEYSAANA 454 Query: 510 KN 511 + Sbjct: 455 RG 456 >UniRef50_C6CDP8 Putative sigma54 specific transcriptional regulator n=1 Tax=Dickeya dadantii Ech703 RepID=C6CDP8_DICDC Length = 485 Score = 212 bits (539), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 135/396 (34%), Positives = 206/396 (52%), Gaps = 39/396 (9%) Query: 149 HVVINGQNFLMEITPVYLQDENDQHVLTGAVV-------------MLRSTIRMGRQLQNV 195 H ++ G++ + P+Y Q +HV++ V LR +G+ Sbjct: 88 HPLLPGKSAFVSGRPIYDQHRALKHVVSILYVDSFFQRLHTHFNYPLRQICSLGKVPSQA 147 Query: 196 AAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAG 255 + ++ S +K + ++A + P+LITG++GTGK++ A A + S RA Sbjct: 148 TLTGDTLPIPLIGRSDTLKRIRTLLTRIAPTNVPVLITGESGTGKEVIASAIQRFSARAD 207 Query: 256 KPYLALNCASIPEDAVESELFGH--------APEGKKGFFEQANGGSVLLDEIGEMSPRM 307 KP++ +NCA+IP +ESELFG+ P+GK GFFEQANGG++ LDEIGE+ Sbjct: 208 KPFIKVNCAAIPTSLLESELFGYDKGAFTGATPQGKAGFFEQANGGTLFLDEIGELPWEA 267 Query: 308 QAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNL 367 QAKLLR L +R+G + +DVR+I AT +L E +Q+ +FR DLYYRL+++ L+L Sbjct: 268 QAKLLRVLQHQEIQRLGSTRSIMLDVRIIAATNASLQEKIQQRLFRSDLYYRLSIIPLHL 327 Query: 368 PPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAI---- 423 PPLR+ P+DI L E F F D+Q + AD L R+ WPGNVR+L+N + Sbjct: 328 PPLRERPEDIPLLIEFFSGVF-DQQYQRIIRFDADGIDRLKRHVWPGNVRELRNFLEYMY 386 Query: 424 ------YRALTQLDGYEL-----RPQDI--LLPDYDAATVAVGEDAMEGSLDEITSRFER 470 + +T ++ + L +P D P + + M+ L I ER Sbjct: 387 ICAEENFVDITTIEHWLLGNRTEQPTDTSSQCPASELESFCQSMLEMDVPLKTIIDEVER 446 Query: 471 SVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 VL Q + +T +AK+LGV+ I KL + L Sbjct: 447 CVLRQSLATHKTTYAVAKKLGVAQPTIVRKLHGHNL 482 >UniRef50_C3WC69 Sigma-54 dependent transcriptional regulator n=5 Tax=Bacteria RepID=C3WC69_FUSMR Length = 591 Score = 212 bits (539), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 101/239 (42%), Positives = 158/239 (66%), Gaps = 8/239 (3%) Query: 193 QNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASP 252 +N A + I++ S KM + E+ +K+A + +LITG++GTGK+L A A H S Sbjct: 259 KNKYAANNIFLEDIISKSEKMSKLKEKIRKIAKTQSTVLITGESGTGKELIARAIHNCSD 318 Query: 253 RAGKPYLALNCASIPEDAVESELFGH--------APEGKKGFFEQANGGSVLLDEIGEMS 304 RA +P++A+NC +IPE+ +ESELFG+ + EG+ G FE AN G + LDEIGEM Sbjct: 319 RAKQPFIAINCGAIPENLLESELFGYVKGAFSGASNEGRVGKFELANNGVIFLDEIGEMP 378 Query: 305 PRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLT 364 +Q KLLR L + T R+G + +++++RVI AT KNL++LV++G FREDLYYRLNV+ Sbjct: 379 FFLQVKLLRVLQERTIVRIGSNKLINLNIRVIAATNKNLLKLVKEGKFREDLYYRLNVIP 438 Query: 365 LNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAI 423 L +P LR+ +DI+ L + +++ G + + D+N + +++WPGNVR+L+N++ Sbjct: 439 LKVPALRERQEDILLLRDYLNTKYSKSLGSSKIVMDDDINEIFLKHSWPGNVRELENSV 497 >UniRef50_A0LFR7 Transcriptional regulator, NifA subfamily, Fis Family n=7 Tax=Deltaproteobacteria RepID=A0LFR7_SYNFM Length = 508 Score = 212 bits (539), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 128/350 (36%), Positives = 195/350 (55%), Gaps = 22/350 (6%) Query: 175 LTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITG 234 L G VV R+ +L+ + A+ + I+ S ++ V+ ++A + +LI+G Sbjct: 160 LLGKVVHFRAVEEENSRLRRMLAEARRPTTNIIGRSKVIQEVLRAIDQVADTNTTVLISG 219 Query: 235 DTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGFF 287 +TGTGK+L A A H S RA P + +NCA++P+ +ESELFGH A ++G F Sbjct: 220 ETGTGKELVARAIHDNSRRAKGPLVQVNCAAMPDTLLESELFGHEKGAFTGAVTRRRGRF 279 Query: 288 EQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELV 347 E+A GG++ LDE+GE+SP QAKLLR L + F+ +G V VDVRVI A+ K+L + V Sbjct: 280 EEAQGGTIFLDEVGELSPIAQAKLLRVLQEREFQPLGSSRTVKVDVRVITASNKDLEKEV 339 Query: 348 QKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVL 407 G FR DLYYRLNV + LPPLR+ DI+ L + FV ++A E ++ +L Sbjct: 340 ALGTFRSDLYYRLNVFPIFLPPLRERGPDILLLADYFVLKYARELDKDVKRITTSAIDML 399 Query: 408 TRYAWPGNVRQLKNAIYRAL-----TQLDGYELRPQDILLPDYDAATVAVG-EDAMEGSL 461 Y WPGNVR+L+N I RA+ +D + L P + P VG ++ G L Sbjct: 400 MCYHWPGNVRELENCIERAVLLAGGNAVDSWHLPPTLQMKP--------VGMQNVSRGKL 451 Query: 462 DEITSRFERSVLTQLYRNYPSTRKLAKR-LGVSHTAIANKLREYGLSQKK 510 + + S FER ++T ++ + A R LG + + K+ +YG+ ++ Sbjct: 452 EALVSAFERDLITDALKDVRGNQSQAARLLGTTKRIVQYKVEKYGIDPRR 501 >UniRef50_C0QF87 Transcriptional regulator (PAS/PAC domain protein) n=2 Tax=Bacteria RepID=C0QF87_DESAH Length = 710 Score = 212 bits (539), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 140/460 (30%), Positives = 227/460 (49%), Gaps = 42/460 (9%) Query: 81 ALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLES 140 L +++E + ++ +D K + MAN + + + + +I + +++ Sbjct: 259 TLQSVMEIAYDGIIVIDKKGVITMANQSIADFLHKSRENMVGKPVEDIIENSRLRKVIKT 318 Query: 141 EPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQL-------- 192 + H ING ++ P+ D L ++L S + R L Sbjct: 319 GVAELHQLQF-INGNPHVVSRMPIV----RDGKALGAVGMILFSNFKDVRNLAQKFIRLD 373 Query: 193 ------QNVAAQDVS---AFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLF 243 +N D+S F QI+ K + E+A+ A S+ +LITG++GTGK+L Sbjct: 374 QKVAYYKNQIRNDMSNKITFDQIITSHEAFKKIKERAEIAAQSSSSILITGESGTGKELM 433 Query: 244 AYACHQASPRAGKPYLALNCASIPEDAVESELFGHAP--------EGKKGFFEQANGGSV 295 A + H+A K + +NCA+IP D +ESE FG+AP +GK G A+GG++ Sbjct: 434 AQSIHEAGVSRDKRLVKVNCAAIPADLLESEFFGYAPGAFTGAQKQGKLGKLALADGGTL 493 Query: 296 LLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFRED 355 LDEIG+MSP +Q+KLLR L D +F +G + HV RVI AT ++L ++VQ+ FR D Sbjct: 494 FLDEIGDMSPNLQSKLLRVLQDKSFEPIGSNKTTHVSFRVIAATNQDLHQMVQEKRFRGD 553 Query: 356 LYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGN 415 LYYRLNV+ ++PPLR+ PQDI+ L F+ ++ G ++ D TVL + WPGN Sbjct: 554 LYYRLNVIHFHIPPLRERPQDIILLVHFFIEKYNHILGSAIQDISDDAMTVLLEHTWPGN 613 Query: 416 VRQLKNAIYRALTQLDGY---------ELRPQDILLPDYDAATVAVGEDAMEGSLDEITS 466 VR+L+N + R + G L+ ++ P + A + + + S D+ Sbjct: 614 VRELENVVERVANFVKGNLVDIDDLPPNLKEKEKKSPSFMAGSPLSTKQRLHKSRDDHDK 673 Query: 467 RFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 +S L + N K AK LG+S + + K+ + L Sbjct: 674 LAIQSALREADGNKA---KAAKILGISRSWLYTKMARFDL 710 >UniRef50_Q0AWA7 Acetoin operon expression regulatory protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWA7_SYNWW Length = 671 Score = 212 bits (539), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 148/449 (32%), Positives = 231/449 (51%), Gaps = 31/449 (6%) Query: 82 LSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLIN-GFNFLRWLES 140 L + + + ++ +DM+ + NPA ++ GQ ++ +L G L+S Sbjct: 224 LGYIYNTVSDGIMVIDMQGIITQINPAVERILGQNSRKIMGIPVKELFEPGQRVEEMLDS 283 Query: 141 EPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQN--VAAQ 198 S++E + G+ ++ + DE Q + G V+ + + I + L N AQ Sbjct: 284 GRDFSYSELTLGIGEAVQCLVSGKAIMDE--QGKVNGGVIFI-NPINHIKSLVNRFSGAQ 340 Query: 199 DVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPY 258 FS I+ S ++ VV A A + +L+ G++GTGK++FA A H AS R P+ Sbjct: 341 ASLHFSDIIGQSQELSRVVRIASLAASSESNILLEGESGTGKEVFAQAIHNASSRRDAPF 400 Query: 259 LALNCASIPEDAVESELFGHAPE--------GKKGFFEQANGGSVLLDEIGEMSPRMQAK 310 +A+NC +IP + + SELFG+ G+ G FE A+GG++ LDEIGEM Q Sbjct: 401 IAVNCGAIPRELLGSELFGYVDGAFTGARRGGRPGKFELASGGTIFLDEIGEMPLGKQVS 460 Query: 311 LLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPL 370 LLR L + T R+G D + VDVRVICA+ + L E V+KG FR DL+YRLNV+ + LPPL Sbjct: 461 LLRVLQERTVTRIGGDKVIPVDVRVICASNRKLHEEVEKGNFRRDLFYRLNVIAITLPPL 520 Query: 371 RDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQL 430 R +DI L F+ + + GV P++ ++ L Y WPGNVR+L+N + R + Sbjct: 521 RQRKEDIPLLFHHFLQDISQKLGVKTPQVETEVIHSLQDYDWPGNVRELQNVVERMVNIA 580 Query: 431 D----GYELRPQDILLPDYDA-ATVAVGEDAMEGSLDEITSRFERS----------VLTQ 475 + E PQ+I P + +A ED+ SL T R +R ++ Sbjct: 581 EESRISREHLPQEISHPAARSLKELANCEDSQLLSLS--TERRKRKEMEQEREQEEIMAL 638 Query: 476 LYRNYPSTRKLAKRLGVSHTAIANKLREY 504 L + + ++AK LGVS I K+++Y Sbjct: 639 LVLHGGNVSQVAKSLGVSRNTIYRKIKQY 667 >UniRef50_A6LV86 Sigma54 specific transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=A6LV86_CLOB8 Length = 590 Score = 212 bits (539), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 109/313 (34%), Positives = 178/313 (56%), Gaps = 15/313 (4%) Query: 204 SQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNC 263 S+IVA K +++ A ++A + +L+ G+TG GKD A H+ S R+ K ++ +NC Sbjct: 276 SEIVAEDHKTIEIIQLANRIAKVDTTILMLGETGAGKDQIAKYIHKVSKRSKKQFIKVNC 335 Query: 264 ASIPEDAVESELFGHAP--------EGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFL 315 ++P +ESE FG+ EGK G FE A+GG++ LDE+GE+ MQ KLLR L Sbjct: 336 GAVPASLIESEFFGYEKGAFTGANKEGKIGLFEMASGGTIFLDEVGELPMDMQVKLLRVL 395 Query: 316 NDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQ 375 + R+G + +DVRV+ AT ++L ++++K FREDLYYRLNV+ L +PPLR+ Sbjct: 396 QEMEVVRIGGTKPIKIDVRVLAATNRDLEDMIKKKQFREDLYYRLNVIPLYIPPLRERKH 455 Query: 376 DIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYEL 435 DI+PL F+ + + + A+D + Y WPGNVR+LKN + RA+ + ++ Sbjct: 456 DILPLINFFLTQLNKKYNFNKI-FASDALNCMYEYNWPGNVRELKNIVERAVIMSEDDKI 514 Query: 436 R----PQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLG 491 + P++I+ + T+ E+ + +L E E+ ++ + Y Y + R AK LG Sbjct: 515 KRSDLPKNIIGSNGMIVTLNTFEEGI--NLKETLDAIEKKLIKKAYDKYGNVRAAAKSLG 572 Query: 492 VSHTAIANKLREY 504 + + K ++Y Sbjct: 573 IDASTFVRKRQKY 585 >UniRef50_A8V246 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V246_9AQUI Length = 454 Score = 212 bits (539), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 106/230 (46%), Positives = 149/230 (64%), Gaps = 7/230 (3%) Query: 206 IVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCAS 265 I+ SP MK++ + A ++A P+LI G+TGTGK+LFA + S R KP++A+NCA+ Sbjct: 134 IIGSSPYMKNICKLAGEVAPTDLPVLIIGETGTGKELFARGLWKLSKRKDKPFIAINCAA 193 Query: 266 IPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDG 318 IPE+ +ESELFG+ A KKG FE ANGG++ LDEIGEM Q+KLLR L +G Sbjct: 194 IPENLIESELFGYEKGAFTGAETQKKGKFEIANGGTIFLDEIGEMPLEAQSKLLRVLQEG 253 Query: 319 TFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIM 378 +F RVG + E++VDVRVI AT K+L ++V++G FREDLYYRLNV+T LPPLR+ +DI Sbjct: 254 SFYRVGGEEEINVDVRVIAATNKDLSQMVKEGKFREDLYYRLNVITFKLPPLRERKEDIP 313 Query: 379 PLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALT 428 + E + + + D L W GN+R+L+N + R++ Sbjct: 314 YIVECIINKNNKKINKNIEGFTKDYIEKLKSRYWKGNIRELENVVIRSMV 363 >UniRef50_A0RFE6 Sensory box sigma-54 dependent DNA-binding response regulator n=18 Tax=Bacillus cereus group RepID=A0RFE6_BACAH Length = 579 Score = 212 bits (539), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 122/328 (37%), Positives = 186/328 (56%), Gaps = 25/328 (7%) Query: 202 AFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLAL 261 +F I+ S KMK V A K++ + +LI G++GTGK+LFA+A H+ASPRA ++ L Sbjct: 255 SFQSIIGESAKMKEVKMMALKVSKSRSTVLIRGESGTGKELFAHAVHRASPRASGTFIRL 314 Query: 262 NCASIPEDAVESELFGHAPEG---------KKGFFEQANGGSVLLDEIGEMSPRMQAKLL 312 NCA+IP D +E+ELFG+ EG K G E A G++ LDEIG+MS MQ KLL Sbjct: 315 NCAAIPRDLLEAELFGY-EEGAFTGAKKGGKPGKIELAEKGTLFLDEIGDMSLDMQVKLL 373 Query: 313 RFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRD 372 R L + R+G VDVR I AT +NL E+VQ+G FREDLYYRLNV + +PPLR+ Sbjct: 374 RVLQEKEIERIGGTKIQKVDVRFIAATHRNLREMVQRGEFREDLYYRLNVFEIAIPPLRE 433 Query: 373 CPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDG 432 +D++ +TE + + E G + + + WPGN+R+L+N + RA+ ++G Sbjct: 434 RKEDMIHITEFLIKKLNGELGSNVISFDERVREIFMEHDWPGNIRELENVLERAMNVIEG 493 Query: 433 YELRPQDILLPDY------------DAATVAVGEDAMEGSLD-EITSRFERSVLTQLYRN 479 ++ LP Y D T+ ++ E SL E+ S +R++ L + Sbjct: 494 MIIQVHH--LPAYLRKKDKEEELYHDIFTIDQKQNEGEYSLQAEVESAEKRAITRALEKT 551 Query: 480 YPSTRKLAKRLGVSHTAIANKLREYGLS 507 + ++ A+ LG+ ++ K+ +Y +S Sbjct: 552 AGNIKEAARLLGIHRASLYRKIEKYEIS 579 >UniRef50_B7HA57 Sensory box sigma-54 dependent DNA-binding response regulator n=58 Tax=Bacillus cereus group RepID=B7HA57_BACC4 Length = 553 Score = 211 bits (538), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 134/382 (35%), Positives = 208/382 (54%), Gaps = 40/382 (10%) Query: 158 LMEITPVYLQDENDQHVLTGAVV--------------MLRSTIRMGRQLQNVAA--QDVS 201 L+ PVY DE + GAVV + + M R Q VA + Sbjct: 178 LINSNPVYCNDE-----IIGAVVSETDVTNQVALNEKLFNMSHEMHRLEQEVAKYKDESD 232 Query: 202 AFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLAL 261 F + SP ++ ++ A+K+ + + +LI G++G GK++FA A H+AS A P++++ Sbjct: 233 PFLAMNGKSPVIQRTIQLARKVCSVKSTVLILGESGVGKEVFAKAIHEASEAAKAPFISI 292 Query: 262 NCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLR 313 NC +IPE ESELFG+ +GKKG E A GG++ LDEIGEM MQ KLLR Sbjct: 293 NCGAIPEALFESELFGYERGAFSGANSKGKKGKIELAQGGTLFLDEIGEMPLDMQVKLLR 352 Query: 314 FLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDC 373 L + + RVG + E+++D R+I AT ++L E ++KG FREDLYYRLNV++L +PPLR+ Sbjct: 353 VLQERKYYRVGGEKEINIDFRIIAATNRDLQEEMRKGTFREDLYYRLNVVSLQIPPLRER 412 Query: 374 PQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALT-QLDG 432 +DI+ LT F+ F+ P L + + L Y WPGN+R+L+N + R + DG Sbjct: 413 REDIIELTYSFLNDFSINYNRPIRDLPSSIMHELLHYNWPGNIRELRNVVERLVVFATDG 472 Query: 433 YELRPQDIL-------LPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTR- 484 + Q+ L L ++ A ++ + + SL E E+ V+ + R + Sbjct: 473 --IIKQEYLPFHTTETLDNHTAHSLLLSNNNTILSLQEEMDEHEKKVIERALRILNGNKL 530 Query: 485 KLAKRLGVSHTAIANKLREYGL 506 + AK+LGV+ + N+L++ L Sbjct: 531 ECAKQLGVTRATLYNRLKKLRL 552 >UniRef50_C0D6Q8 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D6Q8_9CLOT Length = 476 Score = 211 bits (538), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 147/464 (31%), Positives = 237/464 (51%), Gaps = 57/464 (12%) Query: 70 VPW--MPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQ 127 +PW PSE L++++ + VL D + + N A + +G + +++ + + Sbjct: 12 IPWNLHPSE-----FQRLIDSMYDEVLIYDNQYTIVYINDACSRHYGYQPEQMIGKSFFE 66 Query: 128 LING----FNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLR 183 ++G + L + + + + G L P++ + Q L ++ +R Sbjct: 67 FVDGNCWDISVLPVIYEKKKTYAVKQKTKLGSELLTIAVPIF----DSQKNLAYVIMNVR 122 Query: 184 STIRMGRQLQN---VAAQDVSAFSQI-VAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTG 239 + G +L N + + ++S + + S +M+ V++ A++++ + ++TG++GTG Sbjct: 123 DNLS-GVKLFNPDYIYRKSSLSYSTVPMCKSREMEQVIQFAERISQVDVTCILTGESGTG 181 Query: 240 KDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAP--------EGKKGFFEQAN 291 K + A H SPR +P+++LNCASIP + VESELFG+ +GKKG FE A+ Sbjct: 182 KTMVARYIHSISPRNARPFISLNCASIPNELVESELFGYIKGAFTGANTQGKKGLFEAAS 241 Query: 292 GGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGM 351 GG++LLDEI E+S QAKLL L D F +G V VDVR+I AT KNL ++V G Sbjct: 242 GGTLLLDEIAELSLSTQAKLLHVLQDHEFIPIGGSSPVKVDVRIIAATNKNLRQMVADGQ 301 Query: 352 FREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYA 411 FREDL+YRLNV+ + LPPLR DI L + F+ F ++ + R + L T L Y Sbjct: 302 FREDLFYRLNVVEIYLPPLRKRKADIPDLIQQFLKEFNEKYNLSRSLDSHALET-LVNYE 360 Query: 412 WPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSR---- 467 W GNVR+L++ I R + + G D T M GS D T+R Sbjct: 361 WKGNVRELRHMIERLVVTVTG-------------DLITTGHLPQNMTGSTDTGTAREVPK 407 Query: 468 ----------FERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKL 501 FE +++ + Y+ S+RK+A L +S T AN+L Sbjct: 408 ITDYHTRMQNFEEAMIREAYQKCGSSRKMAAYLNISQTK-ANRL 450 >UniRef50_A6CEU3 Acetoacetate metabolism regulatory protein atoC n=2 Tax=Planctomycetaceae RepID=A6CEU3_9PLAN Length = 346 Score = 211 bits (538), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 126/346 (36%), Positives = 195/346 (56%), Gaps = 40/346 (11%) Query: 199 DVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPY 258 D +V +SP M+++ ++ A S+ +L+TG+TGTGK+L A A H+ SPRA P+ Sbjct: 4 DRPILEDMVGLSPAMRNIYRLTRRAAATSSTVLLTGETGTGKELIARAIHELSPRATGPF 63 Query: 259 LALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKL 311 + +NC ++ E +ESELFGH A E + G FE A+GG++ LDEI +S +Q KL Sbjct: 64 IRVNCGALSESLLESELFGHIKGAFTSAVENRTGRFEAAHGGTIFLDEINSVSFTLQVKL 123 Query: 312 LRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLR 371 LR L + F RVG+ + VD R++ AT ++L++ ++ FREDLYYRLNV+ +NLPPLR Sbjct: 124 LRVLQEHEFERVGDTRSIQVDCRIVAATNRDLLDEIEAERFREDLYYRLNVIPINLPPLR 183 Query: 372 DCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYR--ALTQ 429 + +DI L F +F+ E+ +P P+ + ++ + Y+WPGNVR+L+N + R L+ Sbjct: 184 ERAEDIPELVHFFAKQFSAEEKIPLPEFSEEVLSTFKNYSWPGNVRELQNYVERLIVLSG 243 Query: 430 LDGYELRPQDILLPDY---------------DAATVA----------VGEDAMEGSLDEI 464 LDG P LLP + D T+ VGE + + +I Sbjct: 244 LDG----PSLDLLPGHVTGKSLARSLPSKAQDPETMCRDLVNMELQRVGESSTDVH-TQI 298 Query: 465 TSRFERSVLTQLYRNYPSTR-KLAKRLGVSHTAIANKLREYGLSQK 509 S E+ V+ Q+ R+ + K A RLG++ + K+ EY L + Sbjct: 299 VSLVEKEVILQVLRSCQGVQTKTATRLGINRNTLHKKISEYELESE 344 >UniRef50_Q2LUG8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=6 Tax=Bacteria RepID=Q2LUG8_SYNAS Length = 456 Score = 211 bits (538), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 122/331 (36%), Positives = 195/331 (58%), Gaps = 23/331 (6%) Query: 190 RQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQ 249 RQL++ Q V+ I+ S KM + A ++A A +L+ G++GTGK+L A HQ Sbjct: 133 RQLKD---QGVTT-DAIIFTSQKMAALTSMAARVASSRATVLLQGESGTGKELLARLIHQ 188 Query: 250 ASPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGE 302 SPR+ +P + +NC ++PE +ESELFGH A + G FE+A+GG++ LDEIGE Sbjct: 189 LSPRSTRPIITVNCGALPESLIESELFGHEKGAFTGATSRRIGRFEEADGGTLFLDEIGE 248 Query: 303 MSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNV 362 ++ +Q KLLRFL + F+RVG + + DVR+I AT ++L +V++ FREDLYYRLNV Sbjct: 249 LTMPVQVKLLRFLQEREFQRVGGNTNIRADVRIISATNRDLETMVKEEKFREDLYYRLNV 308 Query: 363 LTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNA 422 + +++PPLR+ +DI L + F+ RFA E G ++++ +L +Y +PGNVR+L+N Sbjct: 309 VVMSIPPLRERREDIPALIDHFLERFAAENGKKISGISSEARDLLMKYDYPGNVRELENI 368 Query: 423 IYRALTQLDGYELRPQDILLPDYDAATVAV-------GEDAMEGSLDEITSRFERSVLTQ 475 I RA+ + +D LP + VA GE + G+++ + + + Sbjct: 369 IERAVVIARNEIIYMED--LPFREDTLVATSGGVPEEGEGRLRGAIENLEKQM---IQDA 423 Query: 476 LYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 + + + A+ LG+S + KL++YGL Sbjct: 424 MEKAGDHQTRAAEMLGLSERMLRYKLKKYGL 454 >UniRef50_B5YHF3 Acetoacetate metabolism regulatory protein AtoC n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHF3_THEYD Length = 455 Score = 211 bits (538), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 124/316 (39%), Positives = 184/316 (58%), Gaps = 16/316 (5%) Query: 203 FSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALN 262 F IV+ S MK + ++ +A P+LI G++GTGK+L A A + S R KPY+ +N Sbjct: 140 FEGIVSTSSVMKEIFDKIDAVAKTDVPVLIQGESGTGKELIANAIQKQSLRKEKPYIKIN 199 Query: 263 CASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFL 315 CA+IPE ESELFG+ A E KKG FE ANGG++ DEIG+M +QAKLLR + Sbjct: 200 CAAIPETLFESELFGYEKGAFTGATETKKGKFELANGGTIFFDEIGDMPLSLQAKLLRVI 259 Query: 316 NDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQ 375 DG R+G + ++VR I AT KNL EL++ FREDL+YR+NV+ + +PPL++ + Sbjct: 260 EDGIVYRLGGKEPIKINVRCIYATSKNLKELIKAEKFREDLFYRINVMPIAIPPLKERKE 319 Query: 376 DIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRA-LTQLDGYE 434 DI L E F+ F+++ G ++ L Y +PGNVR+LK+AI RA L DG Sbjct: 320 DIPVLIEKFLKIFSEKYGKQNITISPSAYEALLSYDYPGNVRELKHAIERALLLSKDGV- 378 Query: 435 LRPQDIL-LPDYDAATVAVGEDAM--EGSLDEITSRFERSVLTQLYRNYPSTR-KLAKRL 490 DI LP+ + + + SL E FE++++ + + + + AK+L Sbjct: 379 ---IDIKHLPEEFSPLSSFQKKCFISNFSLKECIENFEKNLIIKALQECGWKKTEAAKKL 435 Query: 491 GVSHTAIANKLREYGL 506 G+S A+ K++ YG+ Sbjct: 436 GISRKALWEKIKFYGI 451 >UniRef50_C7PUT4 Two component, sigma54 specific, transcriptional regulator, Fis family n=36 Tax=Bacteroidetes RepID=C7PUT4_CHIPD Length = 449 Score = 211 bits (538), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 120/320 (37%), Positives = 180/320 (56%), Gaps = 20/320 (6%) Query: 202 AFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLAL 261 +F I+ S ++ +EQA K+A +L+ G+TGTGK++FA A H S R GKP++AL Sbjct: 139 SFDTILGTSRPIRDAIEQASKVAPADTTVLLLGETGTGKEVFAQAIHNNSKRNGKPFVAL 198 Query: 262 NCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRF 314 NC++ + +ESELFG+ A KKG E+AN G++ LDEIGEM +Q+KLLR Sbjct: 199 NCSAFSRELLESELFGYKAGAFTNANRDKKGLIEEANTGTIFLDEIGEMPLDLQSKLLRV 258 Query: 315 LNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCP 374 L G F +VG+ V+VR+I AT ++L E QKG FREDLYYRLNV + LPPLR+ Sbjct: 259 LETGEFIKVGDTKPTKVNVRIIAATNRDLKEESQKGHFREDLYYRLNVFAITLPPLRERK 318 Query: 375 QDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYE 434 +DI L E FV F+ + + K+ L + W GN+R+LKN + RA+ G + Sbjct: 319 KDIPQLAEYFVGIFSAKINQRKQKVTPAFIEKLQLHEWKGNIRELKNVLERAVIMAGGDD 378 Query: 435 LR----PQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRL 490 L P D+ + D + + S ++ S + ++ LY + + A+ L Sbjct: 379 LAVEHLPLDLQIADKASTPL---------SAFDLASVEKLHIIRVLYHTKNNKTEAARLL 429 Query: 491 GVSHTAIANKLREYGLSQKK 510 + + K+ EYGL+ ++ Sbjct: 430 NIGLATLYRKIEEYGLNHQQ 449 >UniRef50_A0LH02 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LH02_SYNFM Length = 510 Score = 211 bits (538), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 124/314 (39%), Positives = 180/314 (57%), Gaps = 21/314 (6%) Query: 206 IVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCAS 265 +V SP M V +K+A A +L+ G++GTGK L A H+ S R+ P++ +NCAS Sbjct: 198 MVGRSPSMLVVQRHIEKVAPSKASVLLLGESGTGKTLVAQMLHELSIRSSAPFVKINCAS 257 Query: 266 IPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDG 318 +PE+ +ESELFG+ A K G E+A GG+V LDE+GE++P +QAKLLRFL D Sbjct: 258 LPENLLESELFGYEKGAFTGAVRSKPGRIEEAEGGTVFLDEVGELTPALQAKLLRFLQDK 317 Query: 319 TFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIM 378 F R+G VDVRV+ AT ++L +V +G FREDLYYRLNV + +PPLR +DI Sbjct: 318 EFERLGSTRTRVVDVRVLAATNRDLAAVVAEGTFREDLYYRLNVFPIQIPPLRARKEDIP 377 Query: 379 PLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQ 438 L F+ R + E G R + +L Y WPGNVR+++N + R + D E+ Sbjct: 378 DLLHHFLDRISREYG-RRIGITNAAMALLAGYDWPGNVREMENLVERMVIMADEDEIGVN 436 Query: 439 DILLPDYDAATVAVGEDAMEGSLDEITSRFE----RSVLTQLYRNYPSTRKLAKRLGVSH 494 +LP + + + M GS E SR E + +L L RN + + AK LG++ Sbjct: 437 --VLPPFLS-------EQMTGSGGETLSRIEKMERKEILAALERNGWNQTRTAKELGITL 487 Query: 495 TAIANKLREYGLSQ 508 I ++R++GL + Sbjct: 488 RQIGYRVRKFGLDR 501 >UniRef50_C5MQI0 Putative uncharacterized protein n=1 Tax=Clostridium difficile RepID=C5MQI0_CLODI Length = 627 Score = 211 bits (538), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 124/321 (38%), Positives = 183/321 (57%), Gaps = 20/321 (6%) Query: 201 SAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLA 260 S F+ I+ S + H V A+K A + ++ITG++GTGK++FA + H S R P++A Sbjct: 312 STFNDILGSSDALMHSVNMAKKFAKSDSTIIITGESGTGKEIFAQSIHNYSNRFNGPFVA 371 Query: 261 LNCASIPEDAVESELFGHAP--------EGKKGFFEQANGGSVLLDEIGEMSPRMQAKLL 312 +NCA+IPE+ +ESELFG+ EGK G FE A+ G++ LDEIGE+S +Q KLL Sbjct: 372 INCAAIPENILESELFGYVKGAFTGARNEGKAGVFELAHNGTIFLDEIGEISKDVQVKLL 431 Query: 313 RFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRD 372 R L + R+G+ V ++VRVI AT KNLVE + FREDL+YRL VL L+LPPLR+ Sbjct: 432 RVLQEREVTRIGDTKVVPINVRVITATNKNLVEQIDNNNFREDLFYRLCVLKLDLPPLRE 491 Query: 373 CPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDG 432 +DI LT ++ + + L +L+RY +PGN+RQLKN + R + D Sbjct: 492 RKEDIEQLTYSIISHYNKPVSISDSALK-----LLSRYDFPGNIRQLKNIVERLVVMCDD 546 Query: 433 Y---ELRPQDILL--PDY--DAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRK 485 E DIL+ P + D + + S ++I ++ +L L +N Sbjct: 547 NFVDEHLVSDILISEPHFRKDINLIPAINYSPVLSDNKIVDYEKKLILETLEKNNGVKSI 606 Query: 486 LAKRLGVSHTAIANKLREYGL 506 A +LG+S T + KL++Y L Sbjct: 607 TANQLGISTTTLWRKLKKYKL 627 >UniRef50_C1MAF5 Signal-transduction and transcriptional-control protein n=5 Tax=Enterobacteriaceae RepID=C1MAF5_9ENTR Length = 582 Score = 211 bits (538), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 119/324 (36%), Positives = 179/324 (55%), Gaps = 30/324 (9%) Query: 205 QIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCA 264 +++ SP M+ + K+A A +LITG++G+GK++ A+A HQ+SPR P++ +NCA Sbjct: 267 RLIGHSPSMEQLRSTIGKIANSYASVLITGESGSGKEVVAFAIHQSSPRKAAPFVTINCA 326 Query: 265 SIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLN 316 +IPE +ESELFG+ P+G+ G FE ANGGS+ LDEIG+M +QAKLLR L Sbjct: 327 AIPEQLLESELFGYVRGAFSGADPKGRMGKFELANGGSLFLDEIGDMPLHLQAKLLRVLQ 386 Query: 317 DGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQD 376 + RVG ++ +++DVR+I AT KN+ +V+ FREDL+YRLNV+ L LP LR+ D Sbjct: 387 EKAITRVGSNNTINIDVRIIAATNKNINAMVENNQFREDLFYRLNVVPLVLPSLRERRAD 446 Query: 377 IMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQ------L 430 I L + F F+ P KL D+ L + WPGN+R+L+N I + Sbjct: 447 IAVLAQYFADEFSVSYQRPPQKLPDDVINRLYAWHWPGNIRELRNVIEYIFVMRGEAAGI 506 Query: 431 DGYELRPQDILLPDYDAATVAV--------GEDAMEGSLDEITSRFERSVLTQLYRNYPS 482 + L P + D T+ G+ A +++ + RF SV Sbjct: 507 NASHLPPYLLTAADGRKTTMTAQPRQLASKGKQAEREAIENVIQRFGSSV--------EG 558 Query: 483 TRKLAKRLGVSHTAIANKLREYGL 506 ++ A LG+S + K++ YGL Sbjct: 559 KKQAATELGISIATLYRKIKLYGL 582 >UniRef50_C8W392 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W392_DESAS Length = 459 Score = 211 bits (537), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 126/350 (36%), Positives = 192/350 (54%), Gaps = 23/350 (6%) Query: 179 VVMLRSTIRMGRQLQNVAA------QDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLI 232 V+ ++ +I+M R + VA Q+ + + S M+ V + K+ +LI Sbjct: 110 VLAVQKSIKMQRLVSEVAILREELDQETDSVDSFIGQSRHMQDVFKTIGKVVDSDITVLI 169 Query: 233 TGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKG 285 G++GTGK++ A H S R+ +P++ +NCA+IPE +ESELFGH A K G Sbjct: 170 QGESGTGKEVVARTIHSNSRRSSRPFIKINCATIPEQLMESELFGHEKGSFTGAVSQKAG 229 Query: 286 FFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVE 345 FE A+ G V LDEIGE+ QAKLLR L + F RVG + VDVR++ AT +NL + Sbjct: 230 KFEIAHNGIVFLDEIGELPLHTQAKLLRVLQEKEFERVGGTKSIEVDVRILAATNRNLED 289 Query: 346 LVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNT 405 +VQ+G FREDLYYRLNV+ + LPPLR+ +DI L FV +FA + ++ + Sbjct: 290 MVQEGKFREDLYYRLNVVNVKLPPLRERKEDISLLINYFVKKFARKYNKNISGISQEAMI 349 Query: 406 VLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDI--------LLPDYDAATVAVGEDAM 457 +YAWPGNVR++KN +A+ L D+ L + A +++ + Sbjct: 350 FAEKYAWPGNVREIKNVCEQAVVMARNSVLMLDDMPLIGNGNGFLEFKNNAKISLDTND- 408 Query: 458 EGSLDEITSRFERSV-LTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 + SL +I + E+ V L L N + + AK LG++ ++ K++EY L Sbjct: 409 KRSLKDIVAEVEKQVILKSLNENNWNRQNTAKALGLNRRSLYAKMKEYDL 458 >UniRef50_B8IB91 Two component, sigma54 specific, transcriptional regulator, Fis family n=19 Tax=Proteobacteria RepID=B8IB91_METNO Length = 466 Score = 211 bits (537), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 125/312 (40%), Positives = 178/312 (57%), Gaps = 10/312 (3%) Query: 206 IVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCAS 265 +V S M+ V + A A +L+ G+TGTGK++ A A H R P++ +NCA+ Sbjct: 140 LVGSSEAMRRVQKAIGLAADSDATVLLQGETGTGKEVVARALHDHGRRWSAPFVPVNCAA 199 Query: 266 IPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDG 318 IP + +ESELFGH A + G F +A GG++ LDEIG+M P MQAK+LR + D Sbjct: 200 IPAELLESELFGHVKGAFTGAAADRPGAFREAQGGTLFLDEIGDMPPAMQAKILRAIQDK 259 Query: 319 TFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIM 378 VG V V++RV+ AT ++L LV G FR+DLYYRLNV+ + LPPLR+ DI+ Sbjct: 260 VVTPVG-GRPVAVEMRVVAATHRDLPALVASGGFRQDLYYRLNVIPIVLPPLRERLADIL 318 Query: 379 PLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQ 438 PL E F+A A GVPR +L L RY WPGNVR+L+N I RA + G + Sbjct: 319 PLAEHFLALGAGGGGVPR-RLTPQAAARLLRYDWPGNVRELRNIIERAAVLVRGEVIDAA 377 Query: 439 DILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTR-KLAKRLGVSHTAI 497 D+ LP +D ED + G L +R E++++ + + R + AKRLG+ + Sbjct: 378 DLDLPGFDRPGGPAPEDWLSGDLPTAVARLEKAMIARALQESSGNRAQAAKRLGIQRQLL 437 Query: 498 ANKLREYGLSQK 509 K+ YGL+ + Sbjct: 438 YAKIERYGLADR 449 >UniRef50_C1PD04 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Bacillus RepID=C1PD04_BACCO Length = 950 Score = 211 bits (537), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 130/327 (39%), Positives = 186/327 (56%), Gaps = 26/327 (7%) Query: 201 SAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLA 260 ++F I+ V A+ A A +LI G++GTGK+LFA A H S R KP++A Sbjct: 633 TSFQNIIGKEHAFLDAVHIAETAAKTDANVLIIGESGTGKELFANAIHHESLRKDKPFIA 692 Query: 261 LNCASIPEDAVESELFGHAPEG---------KKGFFEQANGGSVLLDEIGEMSPRMQAKL 311 +NC ++P+D + SE FG++ EG KKG FE+ANGG+V LDEIGEM +Q L Sbjct: 693 INCGAVPKDLIHSEFFGYS-EGAFTGSKKGGKKGLFEEANGGTVFLDEIGEMPLDLQVTL 751 Query: 312 LRFLNDGTFRRVGEDHEVHVDVRVICATQKNLV-ELVQKGMFREDLYYRLNVLTLNLPPL 370 LR L + R+GE V VDVR+I AT KNL E+ G FR DLYYRLNV + LPPL Sbjct: 752 LRVLQEREITRIGEHKPVPVDVRIIAATNKNLRDEIAYNGSFRSDLYYRLNVFQIELPPL 811 Query: 371 RDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQL 430 R P DI L+E F+++ + G R + AAD +L +Y WPGN+R+L+N I R+ L Sbjct: 812 RKRPGDIQELSEYFLSQLNRKNGT-RKEFAADAVQILKQYEWPGNIRELENIIERSY-YL 869 Query: 431 DGYELRPQDILLPDY------DAATVAVGEDAM-EGSLDEITSRFERSVLTQLYRNYPST 483 G+ ++LP++ + +D M EG E + + +L L + Sbjct: 870 SGF----HSVILPEFLDPYLLNTYKHTQQQDQMIEGKETEEPEK--QHLLALLEETGFNI 923 Query: 484 RKLAKRLGVSHTAIANKLREYGLSQKK 510 K+++ LGVS T + KL++YG+ K+ Sbjct: 924 SKISRILGVSRTTVYKKLQQYGIKLKR 950 >UniRef50_C6BW44 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Desulfovibrionales RepID=C6BW44_DESAD Length = 444 Score = 211 bits (537), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 130/335 (38%), Positives = 188/335 (56%), Gaps = 15/335 (4%) Query: 175 LTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITG 234 L GA+ + + R L+ V D + IV SP M+ V + K A +A +LI+G Sbjct: 112 LQGAMDRIVERVHRRRALKAVEVPDET--YGIVGNSPGMQLVFRRIGKAAATNANVLISG 169 Query: 235 DTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGFF 287 D+GTGK+L A A H S R P++ +NCA+IP+ VESELFGH A E + GFF Sbjct: 170 DSGTGKELVARAVHYHSDRRAAPFVPVNCAAIPDSLVESELFGHVKGAFTGAKEARAGFF 229 Query: 288 EQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELV 347 E ANGG+V LDEIG+ SP MQAKLLR L + +VG VD R++ AT K+L LV Sbjct: 230 EIANGGTVFLDEIGDASPNMQAKLLRILQSKEYCKVGSSVVHTVDTRILAATHKDLKRLV 289 Query: 348 QKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVL 407 + G FREDLYYRL+V+ + +P L + DI+ L F+ +F+ P P + + T L Sbjct: 290 EDGSFREDLYYRLHVVDIPVPSLAERGDDILILISNFLVKFSKTMQCPTPSITDEALTAL 349 Query: 408 TRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSR 467 Y+WPGNVR+L+N I R + +D + D LP ++ + E+ ++ SL E+ Sbjct: 350 RNYSWPGNVRELENLIQRMVVIVDHDPIEVTD--LPPNMRFSLPM-EERVDRSLAEVEQE 406 Query: 468 FERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLR 502 ++VL N + A+ LG++ + KL+ Sbjct: 407 HIKNVLIMTDNN---KTRAAEILGINRKTLREKLK 438 >UniRef50_C6MX44 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter sp. M18 RepID=C6MX44_9DELT Length = 460 Score = 211 bits (537), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 124/313 (39%), Positives = 178/313 (56%), Gaps = 10/313 (3%) Query: 203 FSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALN 262 F +IV+ SP M V Q A + ++I G++GTGK+L A A H SPR KP++ +N Sbjct: 139 FEEIVSNSPSMLSVFNLIQMAAKTDSSVIIYGESGTGKELVANAVHNRSPRLDKPFIKVN 198 Query: 263 CASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFL 315 CA+IPE+ +E+E+ G+ A + KKG E A+GG+ DEIG+MS +QAKLLR L Sbjct: 199 CAAIPENLLEAEMCGYEKGAFTGALQRKKGKLETADGGTFFFDEIGDMSFPLQAKLLRVL 258 Query: 316 NDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQ 375 +F RVG VHVD+R I AT + L + ++KG FREDLYYR+NVL + LPPLR+ Sbjct: 259 ETRSFERVGGTEPVHVDIRFIFATMRRLPDEIRKGKFREDLYYRINVLPITLPPLRERAD 318 Query: 376 DIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYEL 435 DI L FVA F +QG +A + +L Y +PGNVR+LK+A+ A+T + Sbjct: 319 DIPLLLHFFVAHFCRKQGRQVLDIAPEAMELLRSYPYPGNVRELKHAVEMAVTFCSDRVI 378 Query: 436 RPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKL--AKRLGVS 493 P + + + G G+L+ ER + + + RK+ AK LG+S Sbjct: 379 TPSCLPGEIREGSPALQGWRGDAGALESSRKETERQTIINVLKK-TGGRKMAAAKALGIS 437 Query: 494 HTAIANKLREYGL 506 + KL+EY + Sbjct: 438 RETLWRKLKEYNV 450 >UniRef50_B0TAR7 Sigma-54-dependent transcriptional activator (Nifa/ntrc family) n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TAR7_HELMI Length = 767 Score = 211 bits (537), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 132/365 (36%), Positives = 187/365 (51%), Gaps = 57/365 (15%) Query: 201 SAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLA 260 AF++ + S K++ + A+K A A +LI G++GTGK+L A H++ PR+ P++ Sbjct: 389 GAFARFIGQSGKVRDALAMAEKAAEGPATVLIRGESGTGKELVAEGIHESGPRSKGPFIR 448 Query: 261 LNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLR 313 +NCA+IPE +ESELFGH A + K G FE A+ G++ LDEIGE+ MQAKLLR Sbjct: 449 VNCAAIPETLLESELFGHEKGAFTGAIKRKLGKFELAHKGTLFLDEIGELDKGMQAKLLR 508 Query: 314 FLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDC 373 L + R+G + VDV++I AT ++L LV +G FREDLYYRLNV+ + LPPLR+ Sbjct: 509 VLQEKEISRIGGEETFTVDVKIIAATNQDLERLVAEGRFREDLYYRLNVIPILLPPLRER 568 Query: 374 PQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGY 433 +DI L E F+ + EQG + +D L Y+WPGNVR+L N I R +T DG Sbjct: 569 KEDIPLLVEHFLQQTGREQGKALRGIHSDALEALMHYSWPGNVRELANLIERVVTLSDGP 628 Query: 434 ELRPQDILLPDY-------------------DAATVAVGEDAMEGSLDEITSR------- 467 + D LP Y GE G +I Sbjct: 629 WITDSD--LPTYLRERAAEENHEGRPLEERPAGGRYGAGERGYNGREHKIGRSVGGISGS 686 Query: 468 --------------------FERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 +E+ ++T R + S AK LG++H +A K R+YG+ Sbjct: 687 LFRENRWEEQGDAPLLTWEAYEQQIITLALRRHGSFNAAAKALGLTHKTVAAKARKYGID 746 Query: 508 QKKNE 512 KNE Sbjct: 747 --KNE 749 >UniRef50_Q088E6 Sigma54 specific transcriptional regulator, Fis family protein n=2 Tax=Proteobacteria RepID=Q088E6_SHEFN Length = 547 Score = 211 bits (537), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 118/299 (39%), Positives = 172/299 (57%), Gaps = 11/299 (3%) Query: 213 MKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVE 272 MK ++E A +A + + +TG++G GK+ H+ S R KP LA+NC ++ E ++ Sbjct: 246 MKKLIEMAINVAKVPTSIFVTGESGVGKEKLVDFIHRLSDRNNKPLLAINCGALTESLLD 305 Query: 273 SELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGE 325 SELFGH A K G E ANGG++ LDE+GE+SP MQ KLLR + + RRVG+ Sbjct: 306 SELFGHVKGAFTGAENNKMGLIESANGGTLFLDEVGELSPSMQTKLLRVIQEKQIRRVGD 365 Query: 326 DHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFV 385 ++ VDVR+I AT K+L V+ G FR+DLYYRLNV+ L +PPLR+ +DI+PL F+ Sbjct: 366 NNIKDVDVRIISATNKDLEAAVEAGDFRQDLYYRLNVIELKIPPLRNRGEDILPLARCFL 425 Query: 386 ARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDY 445 + F ++ G +L Y WPGN+RQL N I RA+ G ++ P+D+ + Sbjct: 426 SDFNEKLGRKITGFNYKTADLLLNYDWPGNIRQLANTIERAVVLSPGPQIMPEDLPEEFH 485 Query: 446 DAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREY 504 T + ++ L+ I + SVL L N T AK+LG+S + KL+EY Sbjct: 486 QNITKPSINNGIK-PLNTIEKDYIVSVLETLNNNKALT---AKKLGMSLATLYRKLKEY 540 >UniRef50_A4VJ57 Nitrogen fixation positive regulatory protein n=10 Tax=cellular organisms RepID=A4VJ57_PSEU5 Length = 521 Score = 211 bits (537), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 129/316 (40%), Positives = 189/316 (59%), Gaps = 17/316 (5%) Query: 206 IVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCAS 265 +V + M+ V +Q +++A ++ +LI G++GTGK+L A A H SPRA +P + LNCA+ Sbjct: 211 VVGHTASMRRVFDQVRRVAKWNSTVLILGESGTGKELIASAIHYNSPRAHQPLVRLNCAA 270 Query: 266 IPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDG 318 +PE +ESELFGH A + +KG FEQA+GG++ LDEIGE+SP QAKLLR L +G Sbjct: 271 LPETLLESELFGHEKGAFTGAVKQRKGRFEQADGGTLFLDEIGEISPMFQAKLLRVLQEG 330 Query: 319 TFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIM 378 RVG V V+VR++ AT ++L V++G FREDLYYRLNV+ + +PPLR+ DI Sbjct: 331 ELERVGGSQTVKVNVRIVAATNRDLEHEVEQGKFREDLYYRLNVMAIRVPPLRERSADIP 390 Query: 379 PLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYR-ALTQLDGYELRP 437 L E + + A +QG + KL +L + WPGNVR+L+N + R A+ DG R Sbjct: 391 ELAEFLLDKIARQQG-RKLKLTDSALRLLMSHRWPGNVRELENCLERSAIMSEDGTISRD 449 Query: 438 QDILLP-DYDAATVA-VGE-DAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSH 494 L D+DA +A V E D + SLD+ V+ L + K A+ LG++ Sbjct: 450 VVSLTGLDHDATPLAPVPEVDLADDSLDD-----RERVIAALEQAGWVQAKAARLLGMTP 504 Query: 495 TAIANKLREYGLSQKK 510 IA +++ + +K Sbjct: 505 RQIAYRVQTLNIHMRK 520 >UniRef50_B7DTW4 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DTW4_9BACL Length = 668 Score = 211 bits (537), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 127/358 (35%), Positives = 201/358 (56%), Gaps = 25/358 (6%) Query: 170 NDQHVLTGAVVML----RSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAM 225 N Q V G +++L +S G ++ + A + I+ S ++ +++AQ +A Sbjct: 309 NGQQV--GCIILLARDSQSRHTRGHRVTDNAINVNHPWRTIIGSSRVIQRAIQRAQIVAA 366 Query: 226 LSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAP----- 280 +AP+LITG++GTGK+LFA A H+ASPR +P++A+N A++P + + SELFG+ P Sbjct: 367 TNAPVLITGESGTGKELFARAIHEASPRGKQPFVAVNIAALPRELIASELFGYEPGAFTG 426 Query: 281 ---EGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVIC 337 GKKG FE+ANGG++ LDEIG+M +Q LLR L + R+G VDVR+I Sbjct: 427 AHPRGKKGKFEEANGGTLFLDEIGDMPLELQVYLLRVLQEKKITRLGSTTSEAVDVRIIA 486 Query: 338 ATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRP 397 AT +NL + V G FR DL+YRLNV+ + LPPLRD D+ + + F++ FA + Sbjct: 487 ATNQNLAQRVANGEFRLDLFYRLNVVEIELPPLRDRLADVPSIAQHFLSLFAQKHDKSVE 546 Query: 398 KLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVG---- 453 + ++ + +Y WPGNVR+L+N I ++ + + D LPDY ++ Sbjct: 547 RFDPEVLNLFKQYHWPGNVRELQNVIEYSVIFSETDSITVND--LPDYLTRSIFKNLEVS 604 Query: 454 ----EDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 D +E S D I + R + L + + ++A++L S T I K++ YGL+ Sbjct: 605 DKPIYDTIEMS-DAIENEERRLIAYWLEKTNGNISQVARQLRRSRTTIYRKIKHYGLN 661 >UniRef50_Q214B6 Sigma-54 factor, interaction region n=1 Tax=Rhodopseudomonas palustris BisB18 RepID=Q214B6_RHOPB Length = 628 Score = 211 bits (537), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 129/331 (38%), Positives = 181/331 (54%), Gaps = 21/331 (6%) Query: 193 QNVAAQDVSA--FSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQA 250 Q++A V+ F IV + H +E+A+K A+ + +LI G+TGTGK+LFA + H Sbjct: 302 QHIAKGHVARIRFEDIVGKGEAIHHTIERAKKFALSESSVLIIGETGTGKELFAQSIHNH 361 Query: 251 SPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGE 302 S R KP++A+NCA++P + +ESELFG+ GK G FE A+GGSV LDEIGE Sbjct: 362 SRRHSKPFVAINCAALPNNVLESELFGYVRGAFTGAKDAGKSGIFELAHGGSVFLDEIGE 421 Query: 303 MSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNV 362 + MQAKLLR + + +R+G+D V VDVRVI AT KN+ V+ G FREDLY+RLN Sbjct: 422 IPIEMQAKLLRVIQERQVQRIGDDKLVPVDVRVISATNKNVDNEVKLGRFREDLYFRLNT 481 Query: 363 LTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNA 422 L L LPPLR+ D+ L F+ R G D L Y+WPGNVRQL N Sbjct: 482 LELELPPLRERTGDVPTLIRHFMGR----AGRREVSFTPDAQRFLNVYSWPGNVRQLGNF 537 Query: 423 IYRALTQLDGYELRPQDI--LLPDYDAATVAVGEDAMEGSL----DEITSRFERSVLTQL 476 I R D + ++ LL A+V +L + + + ER ++ + Sbjct: 538 IERLNVLYDQPSMSLSEVCDLLGTAAGASVQGAAQQRPSTLAPDDENVLEKMERDLIAEA 597 Query: 477 YRNYPSTRKLAK-RLGVSHTAIANKLREYGL 506 R+ A LG+S + + K ++YGL Sbjct: 598 LDITTGNREKASIILGISPSTLGRKKKQYGL 628 >UniRef50_C0GH19 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GH19_9FIRM Length = 739 Score = 211 bits (537), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 123/316 (38%), Positives = 180/316 (56%), Gaps = 20/316 (6%) Query: 205 QIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCA 264 QI+ S K+K K A ++ +L+ G++GTGK LFA A H + R P++ +NC+ Sbjct: 429 QIIGDSKKVKTAKNFVLKAAQSASTVLLLGESGTGKGLFARAIHFSGNRKDGPFIKVNCS 488 Query: 265 SIPEDAVESELFGH--------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLN 316 +IPE +ESELFG+ GK G FE ANGG++ LDEIG+M MQAK+LR L Sbjct: 489 AIPETLLESELFGYEEGSFTGAQKGGKIGKFELANGGTIFLDEIGDMPFNMQAKMLRVLQ 548 Query: 317 DGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQD 376 + R+G H + +DVRVI AT ++L E ++ FREDLYYRL+VL++++PPLR+ D Sbjct: 549 EREIERIGGHHSIPIDVRVIAATNRDLREEIKANRFREDLYYRLDVLSISIPPLREMASD 608 Query: 377 IMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELR 436 I LT+ + R + VP K++ ++ V RY WPGNVR+L+N + R L ++ Sbjct: 609 IPVLTQSLIERICKKHHVPPKKVSEEVMGVFCRYPWPGNVRELENMLERLLNLVE----- 663 Query: 437 PQDIL----LPDYDAATVAVGEDAMEG-SLDEITSRFERSVLTQLYRNYPSTR-KLAKRL 490 +DI+ LP + + G SLD +TS ER + + + R K AK L Sbjct: 664 -EDIINIDHLPAHLWQHIQSSRYLASGHSLDNMTSEVERDAIINALKATKNNRSKAAKLL 722 Query: 491 GVSHTAIANKLREYGL 506 G+ + KL+ Y L Sbjct: 723 GLHRSTFYEKLKRYDL 738 >UniRef50_B6WWW5 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WWW5_9DELT Length = 606 Score = 211 bits (536), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 108/240 (45%), Positives = 151/240 (62%), Gaps = 9/240 (3%) Query: 194 NVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPR 253 +VA + F V SP++K + + +A ++ L+I GDTGTGK + A A H ASPR Sbjct: 284 SVARLNTFTFDGFVTNSPRLKETIAYMKGVAASNSTLIIYGDTGTGKSVLAAAIHDASPR 343 Query: 254 AGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGEMSP 305 KP+++ NCA+IPE +ESELFG+ +GKKG+FE A+GG++ LDE+ E+S Sbjct: 344 RDKPFISFNCATIPETLIESELFGYYGGAFTGANKKGKKGYFELAHGGTIFLDEVNELSQ 403 Query: 306 RMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTL 365 Q K+L+FL D TF +G + V VDVRVICAT L +L+++G FR+DLYYRL+V Sbjct: 404 SAQTKILKFLEDRTFIPIGSEESVSVDVRVICATNGRLRQLMEQGAFRKDLYYRLSVFEF 463 Query: 366 NLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYR 425 +PPLR+ P+DI P+ FVA F + +L L L + +PGNVRQL+N I R Sbjct: 464 IIPPLRERPEDIAPIASKFVAEF-NRVHQHNFRLTPALIRRLRDHDYPGNVRQLRNVIER 522 >UniRef50_C0QPW4 Sigma-54 specific transcriptional regulator, Fis family n=1 Tax=Persephonella marina EX-H1 RepID=C0QPW4_PERMH Length = 443 Score = 211 bits (536), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 121/314 (38%), Positives = 184/314 (58%), Gaps = 11/314 (3%) Query: 204 SQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNC 263 +++ S MK V + +K A P+LI G+TGTGK+L A A H+ S RA KP++ +NC Sbjct: 129 KEMIGTSEAMKKVFQLIRKFAPTDYPVLIIGETGTGKELTARAIHERSNRADKPFVVVNC 188 Query: 264 ASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLN 316 A+IP D +E+ELFG+ A + + G E ANGG++ LDEIG+M +Q+K+LRFL Sbjct: 189 AAIPHDLLEAELFGYEKGAFTGADKKRIGKIEYANGGTLFLDEIGDMPYDLQSKILRFLQ 248 Query: 317 DGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQD 376 + TF R+G + DVR+I AT +L + V++G FR DLYYRL+VLT+ LPPLRD +D Sbjct: 249 EYTFERIGSNETKTADVRIIAATNVDLDQAVKEGKFRRDLYYRLSVLTIKLPPLRDRGED 308 Query: 377 IMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELR 436 + + + FV R++ E G L AD V+ + WPGNVR+L N I +A+ D + Sbjct: 309 PVIMAKYFVERYSKELGKNIKGLTADALEVIRDHPWPGNVRELINTIRKAVVLTDKEFID 368 Query: 437 PQDILLP-DYDAATVAVGEDAMEGSLDEITSRFERSVLTQLY-RNYPSTRKLAKRLGVSH 494 +D+ L + GED + +L ER +L + + + K+AK LG+S Sbjct: 369 VEDLDLKVKCNPQGSGNGEDIL--NLKRNIEDLERRLLKEAFILAKGNISKVAKMLGISR 426 Query: 495 TAIANKLREYGLSQ 508 + + ++G+ + Sbjct: 427 PKVYKLMEKHGIGE 440 >UniRef50_A5GDL0 Sigma-54 specific transcriptional regulator, Fis family n=4 Tax=Geobacter RepID=A5GDL0_GEOUR Length = 591 Score = 211 bits (536), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 121/317 (38%), Positives = 189/317 (59%), Gaps = 18/317 (5%) Query: 205 QIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCA 264 +++A SP M + QA K++ + + +LI G++G GK L A H+ S RA KP + +NC Sbjct: 279 RVIARSPVMLKALHQAIKVSTVDSSVLILGESGVGKGLIADLIHKNSLRAKKPLIKINCG 338 Query: 265 SIPEDAVESELFGH--------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLN 316 +IPE +ESELFG+ GK G+FE A+GG++ LDEI E+ Q KLLRFL Sbjct: 339 AIPESLIESELFGYEKGAFTGAQAGGKPGYFELADGGTLFLDEIAELPLSSQVKLLRFLE 398 Query: 317 DGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQD 376 DG R+G + VDVR++ AT +NL E+V +G FR DLYYRL V+ + +P +R+ Sbjct: 399 DGRITRLGGTNGRTVDVRILAATHRNLEEMVSQGKFRLDLYYRLKVIPIYVPSVRERKDC 458 Query: 377 IMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYR--ALTQLDGYE 434 I+PL ++ F + G+ + +L + +L Y +PGNVR+L N R +++++ + Sbjct: 459 ILPLIHHYIDFFGTKTGI-KKRLTRAASDILMSYPYPGNVRELMNICERLVVMSEMELID 517 Query: 435 LR--PQDIL--LPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRL 490 L+ P DI+ + + A++A E E SL + ER+VL Q Y + ++A+ L Sbjct: 518 LKDLPGDIVARVEETGKASMAWPE---EMSLQQAIDSVERNVLAQAVERYGNQCRMAEVL 574 Query: 491 GVSHTAIANKLREYGLS 507 GV+ + IA KL++YGL+ Sbjct: 575 GVNQSTIARKLKKYGLT 591 >UniRef50_A8USY5 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8USY5_9AQUI Length = 349 Score = 211 bits (536), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 122/329 (37%), Positives = 188/329 (57%), Gaps = 14/329 (4%) Query: 189 GRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACH 248 GR + V ++ + V +M V + ++ A P+LI G+TGTGK+L A A H Sbjct: 25 GRLPEEVKSKVCEENTDFVGSCERMTRVFDLIRRFAPTDYPVLILGETGTGKELTARAIH 84 Query: 249 QASPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIG 301 + SPR K ++A+NC +IP + +E+ELFG+ A K G EQANGG++ LDEIG Sbjct: 85 EKSPRREKAFIAINCGAIPGELLEAELFGYEKGAFTGAHRRKPGKIEQANGGTLFLDEIG 144 Query: 302 EMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLN 361 E+ +Q KLLRFL D TF RVG + + DVR+I AT +L ELV+KG FREDLYYRL Sbjct: 145 ELPLELQVKLLRFLEDYTFSRVGGNETIKADVRLIAATNGDLRELVRKGKFREDLYYRLK 204 Query: 362 VLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKN 421 VL++ LPPLRD +D + + + F+ +F EQ + ++ Y+WPGNVR+L N Sbjct: 205 VLSIELPPLRDRGEDKVLMAKYFLEKFKREQEKSIEGFTDEAIELIENYSWPGNVRELIN 264 Query: 422 AIYRALTQLDGYELRPQDILLPDYDAATVA--VGEDAMEGSLDEITSRFERSVLTQLYR- 478 + +A+ D + D+ D D + V+ +G + +L E + E+ ++ + + Sbjct: 265 VMKKAVVMTDKRFIDAVDL---DVDTSKVSKNIGGQRL-FNLKEHMDKLEKELVEKAFNV 320 Query: 479 NYPSTRKLAKRLGVSHTAIANKLREYGLS 507 + + K+A LGVS + + ++ L+ Sbjct: 321 SKGNISKMASMLGVSRPTVYKLIEKHNLA 349 >UniRef50_C8SGD9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Mesorhizobium opportunistum WSM2075 RepID=C8SGD9_9RHIZ Length = 485 Score = 211 bits (536), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 128/324 (39%), Positives = 185/324 (57%), Gaps = 23/324 (7%) Query: 203 FSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALN 262 F ++V VS KM + E A++ A P+LI G+TGTGK+L A A H S R P L N Sbjct: 161 FEKLVYVSEKMAELCELARQAARTELPILIEGETGTGKELLARAIHYNSTRRASPLLVQN 220 Query: 263 CASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFL 315 C +P++ ++SELFGH A + G F A+GG+V LDEI E+SP Q LLRFL Sbjct: 221 CGGVPDELLQSELFGHKRGSFTGAISDRLGLFRAADGGTVFLDEISEVSPSFQVSLLRFL 280 Query: 316 NDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQ 375 +G + +G D H DVR+I A+ + L LV +G FR+DLY+RL +P LR+ P+ Sbjct: 281 QEGEVKPLGSDRVTHCDVRIIVASNRRLKNLVARGEFRQDLYFRLKGFEFEVPALRERPE 340 Query: 376 DIMPLTELFVARFADEQGVPRPKLAADLNTV--LTRYAWPGNVRQLKNAIYR--ALTQLD 431 DI PL E F A+ AD G R L NT+ L+ +PGNVR+L+N I R AL + D Sbjct: 341 DIGPLAEFFAAKHADAIG--RKILGITANTIEKLSGGEFPGNVRELENEIRRMVALAK-D 397 Query: 432 GYELRPQDI---LL---PDYDAATVAVGEDAMEGSLDEITSRFERSVLTQ-LYRNYPSTR 484 G L +++ LL P + VA + + +L + ER ++++ L RN+ + Sbjct: 398 GEYLTTRNMSATLLAAPPRRSSEAVAFLPEGV--TLKDQVESLERQIVSRALVRNHWNQS 455 Query: 485 KLAKRLGVSHTAIANKLREYGLSQ 508 + A LG+S +ANK++ Y L++ Sbjct: 456 RTANELGLSRVGLANKIKRYSLNE 479 >UniRef50_A0L4D4 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=cellular organisms RepID=A0L4D4_MAGSM Length = 457 Score = 210 bits (535), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 122/325 (37%), Positives = 181/325 (55%), Gaps = 27/325 (8%) Query: 205 QIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCA 264 ++V P M ++ Q ++++ +A +LI G++GTGK+L A HQ S RA P++A+NCA Sbjct: 132 RLVTADPAMLKLLGQVRRVSNSNATVLIQGESGTGKELMARYVHQVSDRANGPFVAINCA 191 Query: 265 SIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLND 317 ++PE+ +ESELFGH A +KG F QANGG++ LDEI EM+ +QAKLLR L + Sbjct: 192 ALPENLLESELFGHIKGAFTGATSDRKGKFLQANGGTIFLDEISEMTLNLQAKLLRVLQE 251 Query: 318 GTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDI 377 VG H + +DVRVI +T ++L E G+FREDLYYRLNV + + PLR P+D+ Sbjct: 252 KEVDPVGGKHPIALDVRVIASTNRDLKEYAADGLFREDLYYRLNVFPVFITPLRQRPKDV 311 Query: 378 MPLTELFVARFADEQG---VPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYE 434 + L +LF RF E G +P A D L RY WPGN+R+L+N + RAL + Sbjct: 312 VLLADLFRQRFIKELGRNDIPFDAAAMD---ALVRYRWPGNIRELENVVQRALLIAEDDA 368 Query: 435 LRPQDILLP-------------DYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYP 481 + D+++ D D +A+ D + + E ++ + Sbjct: 369 VSSHDLMIEVSGSAAPSPSMTRDADEMGMALDGDHIHMPVGTTVREMEEILIRRTLDEVD 428 Query: 482 STR-KLAKRLGVSHTAIANKLREYG 505 R + A+ LG+S + NKL EY Sbjct: 429 GNRTRAAEILGISIRTLRNKLNEYA 453 >UniRef50_Q027R3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Bacteria RepID=Q027R3_SOLUE Length = 477 Score = 210 bits (535), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 128/330 (38%), Positives = 179/330 (54%), Gaps = 22/330 (6%) Query: 201 SAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLA 260 + ++V SP+M+ + Q+ A +LITG++GTGK++ A H SPR P++A Sbjct: 141 GSLGEMVGKSPRMQEIFALLQQAGPSRAGVLITGESGTGKEMVARTLHALSPRRQGPFVA 200 Query: 261 LNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLR 313 +NCA++PE +ESELFGH A E + G FE A G++LLDEIGEM QAKLLR Sbjct: 201 INCAALPESLIESELFGHEKGSFTGATERRAGCFELAQNGTLLLDEIGEMPMATQAKLLR 260 Query: 314 FLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDC 373 L D RR+G E VDVRV+ AT K E VQ G REDL+YRLNV ++LPPLRD Sbjct: 261 ILEDSKVRRLGGRTEFEVDVRVVAATNKVPEEAVQGGHLREDLFYRLNVFHVHLPPLRDR 320 Query: 374 PQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRA--LTQLD 431 DI + + +A + ++AA + T L R+ WPGNVR+L+N + RA L Sbjct: 321 KDDIQAMADALIADLNRKHECRVTEIAAAVMTCLQRHNWPGNVRELRNVLERAVILAGEG 380 Query: 432 GYELRPQDILLPDYDAATVAVGE---------DAMEGSLDEITSRFERS----VLTQLYR 478 E++ + L + A VA E D +E I + E + +L L Sbjct: 381 TIEVKHLPVFLQNRPATVVASDEPAAVAATAADDLETVRFLIGTTVEEAEKGLILRTLEH 440 Query: 479 NYPSTRKLAKRLGVSHTAIANKLREYGLSQ 508 + + A LG+S + NKL+EYG + Sbjct: 441 TNNNKTRAADILGISLKTLHNKLKEYGAKE 470 >UniRef50_C0Z5U4 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z5U4_BREBN Length = 548 Score = 210 bits (535), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 153/494 (30%), Positives = 246/494 (49%), Gaps = 90/494 (18%) Query: 82 LSALLEALPEPVLSVDMKSKVDMANPAS--------CQLFGQKLDRLRNHTAAQLINGFN 133 L L++ + E V VD ++ V N A+ Q+ G LD H A++ I + Sbjct: 74 LRTLMDTMSEAVTIVDSRNVVQHWNRAAETIYEIDRAQVVGTSLD---EHFASESIRLLD 130 Query: 134 FLRWLESEPQDSH----NEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVM---LRSTI 186 LR S + H + HV+IN P+ + E + GA+ + + + Sbjct: 131 ALRQGTSVQRVYHIPRPDSHVLINA-------APIRREGE-----IIGAISIEQDITELV 178 Query: 187 RMGRQLQNVAA------QDVSAFSQ-------IVAVSPKMKHVVEQAQKLAMLSAPLLIT 233 R+ +L + A Q++S F I S ++ + A+K+A A +LI Sbjct: 179 RLNEELAHTTAHLHNLQQEMSRFQAADDPFYAIKGHSASIQSAIGSAKKVAQTDATVLIY 238 Query: 234 GDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKG 285 G++G GK+LFA A HQAS R KP++A+NC +IP ESELFG+ +GK G Sbjct: 239 GESGVGKELFAQAIHQASRRHEKPFIAINCGAIPAALFESELFGYQGGAFTGAEKKGKPG 298 Query: 286 FFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVE 345 E A+GG++ LDEIGE+ +Q KLLR L + F RVG + V+ R++ AT + L + Sbjct: 299 KLELAHGGTLFLDEIGELPLELQVKLLRALQERQFYRVGGTEPITVNTRIVAATNRQLEQ 358 Query: 346 LVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARF--ADEQGVPRPKLAADL 403 +V G FREDLYYRLNV +L +PPLR+ +D+ L ++F+ + A +Q VPR ++ ++ Sbjct: 359 MVADGRFREDLYYRLNVFSLEIPPLRERREDLPELVQIFIHEYSVAHDQSVPR--ISPEV 416 Query: 404 NTVLTRYAWPGNVRQLKNAIYR-ALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLD 462 L Y WPGN+RQL+N I R ++ Q +G ++LP++ + + + SL Sbjct: 417 MQALFEYTWPGNIRQLRNVIERLSILQENG-------VILPEHLPSVIRSHTEPTHVSLH 469 Query: 463 --------------------EITSRFERS-------VLTQLYRNYPSTRKLAKRLGVSHT 495 I + S +L L R Y + + A+ LGVS Sbjct: 470 TPMGGTYAPPTTTPPPIIRPSIAIAYPSSPANEKERILAALERTYGNKKAAAELLGVSRG 529 Query: 496 AIANKLREYGLSQK 509 + NK++++ ++++ Sbjct: 530 TLYNKMKKFNINEE 543 >UniRef50_Q220U8 Two component, sigma54 specific, transcriptional regulator, Fis family n=14 Tax=Proteobacteria RepID=Q220U8_RHOFD Length = 453 Score = 210 bits (535), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 123/330 (37%), Positives = 186/330 (56%), Gaps = 19/330 (5%) Query: 187 RMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYA 246 R R+LQ A Q A + ++ P+M + +K+A +A +++ G++GTGK++ A Sbjct: 132 RENRRLQ--ALQQPDAMAGLITRDPEMLRICRTIEKVASSNATVMLLGESGTGKEVLARG 189 Query: 247 CHQASPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDE 299 HQASPR + ++A+NCA+IPE+ +ESELFG+ A + G E A+GG+++LDE Sbjct: 190 LHQASPRRAEKFVAINCAAIPENLLESELFGYEKGAFTGAAKMTLGKIEMAHGGTLMLDE 249 Query: 300 IGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYR 359 IG++ +QAKLLRFL + RVG E+ VDVR++CAT ++L L + G FREDLYYR Sbjct: 250 IGDLPLSLQAKLLRFLQERVIERVGGRQEIAVDVRIVCATHQDLAALSKDGRFREDLYYR 309 Query: 360 LNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQL 419 L + +N+PPLR+ D L FV RFA EQ L D + + WPGN+R+L Sbjct: 310 LAEIVVNIPPLRERVGDAALLAHAFVRRFAQEQNRSAMTLTEDAVQAVENHLWPGNIREL 369 Query: 420 KNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFE---RSVLTQL 476 +N I RA DG ++ D+ L ++ D + SLD R + R+++ L Sbjct: 370 ENCIRRAAIMADGSQIGCDDLGLK-------SLQNDETDTSLDLRVIRDDAEKRAIVAAL 422 Query: 477 YRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 R + + A LGVS + + + L Sbjct: 423 GRVNGNMVRAADLLGVSRPTLYDLMHRLAL 452 >UniRef50_UPI00016C4268 cetoacetate metabolism regulatory protein atoC n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4268 Length = 475 Score = 210 bits (535), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 129/336 (38%), Positives = 183/336 (54%), Gaps = 27/336 (8%) Query: 199 DVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPY 258 D I+ P M V + ++A P+LITG++GTGK+L A A HQ S RAG+P+ Sbjct: 135 DDGGTGPIIGSCPAMMEVYKAVGRVAPQDVPVLITGESGTGKELVARAVHQYSRRAGRPF 194 Query: 259 LALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKL 311 +ALNCA+IPE +ESELFGH A + G FEQ +GG++ LDEIG+M +Q+KL Sbjct: 195 VALNCAAIPEQLLESELFGHEKGAFTGADRRRIGRFEQCDGGTLFLDEIGDMPLALQSKL 254 Query: 312 LRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLR 371 LR L + F RVG V DVR+I AT ++L G FR DLYYRL V T+ LPPLR Sbjct: 255 LRVLQEQAFERVGGGETVRTDVRIISATHRDLKARAAAGTFRPDLYYRLGVFTMRLPPLR 314 Query: 372 DCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLD 431 D +D+ L F+ RF E G ++A+ LT+YAWPGN+R+L++ + +AL + Sbjct: 315 DRAEDLPLLVRHFLGRFNRELGRRVSDISAEALARLTQYAWPGNLRELQSVLKQALLRTT 374 Query: 432 GYELRPQ---DILLPDYDAATVAVG------------EDAMEGSLDEIT---SRFERSVL 473 G L P D+ P A+ D E L+E RF ++ Sbjct: 375 GTVLLPSALADMAGPSAAPASEPPARADLHQFVRRRLSDGSENLLEEARLELDRFLLPMV 434 Query: 474 TQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQK 509 +L R + + A+ LGV+ + +L E G++ + Sbjct: 435 MELTRG--NQVRAARVLGVARLTLRRRLHELGIAPR 468 >UniRef50_A8MEG8 Putative sigma54 specific transcriptional regulator n=3 Tax=Clostridiaceae RepID=A8MEG8_ALKOO Length = 700 Score = 210 bits (535), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 138/410 (33%), Positives = 213/410 (51%), Gaps = 30/410 (7%) Query: 82 LSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESE 141 L LL+ + + ++ +D K + + N + ++ G + + + L F LE+ Sbjct: 214 LDILLQVIDDGLIGIDAKGSIFLYNENAGEIVGYTREDVVHRDGILLFPQIPFKDVLEN- 272 Query: 142 PQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVS 201 + + ING + ++ + P+ + L GAV ++R Q + A+ + Sbjct: 273 LRSVREILIKINGVDLIVSVDPIVHSER-----LYGAVAIIRRFSDAESQQHRLRAKVIG 327 Query: 202 A-------FSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRA 254 F IV S +K +E A+++A ++ +LITG++GTGK+LFA A H S R Sbjct: 328 KGHKAKYNFGDIVGESENIKKTIEIAKRMARSNSSILITGESGTGKELFAQAIHNNSKRR 387 Query: 255 GKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGEMSPR 306 ++A+NC ++PE +ESELFG+ GK G FE A+ G++ LDEIGEM P Sbjct: 388 NFQFVAINCGALPESLLESELFGYEEGAFTGARKGGKSGLFELAHNGTLFLDEIGEMPPS 447 Query: 307 MQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLN 366 +Q +LLR L + R+G D ++VD+R+I AT KNL E++ G FREDLYYRLNVL L Sbjct: 448 LQMRLLRVLQEREVMRLGGDSIINVDIRIIAATNKNLKEMMATGGFREDLYYRLNVLPLK 507 Query: 367 LPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRA 426 +PPLR +DI L + F A F ++A D VL Y W GNVR+LKN I Sbjct: 508 IPPLRSRKKDIETLVDRFRAEF--RGSFVLSQMAKD---VLLSYNWKGNVRELKNYI-EY 561 Query: 427 LTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQL 476 L L+ E+ +D+ ++ G +E + I S ER++ L Sbjct: 562 LVSLEIKEVDVKDLPFEIFEEVE---GNILLEEDAEAIVSSEERNIYNDL 608 >UniRef50_C0QG59 Response regulator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QG59_DESAH Length = 465 Score = 210 bits (535), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 121/324 (37%), Positives = 183/324 (56%), Gaps = 27/324 (8%) Query: 203 FSQIVAVSPKMKHVVEQAQKLAML-SAPLLITGDTGTGKDLFAYACHQASPRAGKPYLAL 261 I+ SP M + + +KL+ + + +LI G++GTGKDL A A H +PR+G+P++ + Sbjct: 139 LENIIGDSPPMLELYKTVKKLSHVKTTTVLIRGESGTGKDLLAKAIHNLNPRSGRPFIEI 198 Query: 262 NCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRF 314 NCAS+PE +ESELFGH A K G E AN G++ LDEIGE+S +QAKLL+F Sbjct: 199 NCASLPEHLLESELFGHEKGAFTDAKNRKTGLVEIANNGTLFLDEIGELSILLQAKLLKF 258 Query: 315 LNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCP 374 + TFRRVG EV V+V +I AT +NL + +++ FR+DL+YRLNV+ L PPLRD Sbjct: 259 IETKTFRRVGGTSEVSVNVFIITATNRNLEQAIREQTFRQDLFYRLNVVPLFSPPLRDRK 318 Query: 375 QDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYE 434 +DI+ +T+ ++ + + G +A D + Y WPGNVR+LKN I R + DG Sbjct: 319 EDILKITDYYLDHYCRKFGKDLLSMALDAQHIFLNYDWPGNVRELKNLIERLVILSDGAT 378 Query: 435 LRPQDILLPDYDAATVAVGE-------------DAMEGS---LDEITSRFERSVLTQLYR 478 + + LPD +A E D G +DEI + E+ ++ Sbjct: 379 ITGRH--LPDGMIQPIAASERENRFDPMHVFKQDFSRGEQIPMDEILTAVEKKMIVNALE 436 Query: 479 NYPSTR-KLAKRLGVSHTAIANKL 501 + + + AK LG+S ++ ++ Sbjct: 437 KADNVKTRAAKALGISRYSLLRRI 460 >UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYK0_9BACT Length = 456 Score = 210 bits (534), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 119/329 (36%), Positives = 187/329 (56%), Gaps = 14/329 (4%) Query: 190 RQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQ 249 R NV + +S+ + KM + EQ +K+A A +LI G++GTGK+L A A H Sbjct: 132 RSASNVDEKSEPVYSK----NSKMSQIYEQLKKIAQSKASVLIQGESGTGKELVARAIHY 187 Query: 250 ASPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGE 302 SPR KP++ +NCA++ E +ESELFGH A + G FE AN G++LLDE+ E Sbjct: 188 FSPRCEKPFIRVNCAALAESLLESELFGHERGAYTGAVAKRIGRFELANEGTLLLDEVSE 247 Query: 303 MSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNV 362 +SP +QAKLLR L + F RVG + + +DVR++ T ++L + +QKG FREDL+YRLNV Sbjct: 248 ISPNIQAKLLRVLEEEEFERVGGEKTIKIDVRIVATTNRDLAKEIQKGTFREDLFYRLNV 307 Query: 363 LTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNA 422 + ++LPPLR+ +DI L ++ +++ E + L++Y WPGNVR+LKN Sbjct: 308 VPIHLPPLRERREDIPLLANTYLEKYSSENNSSVKSIEKRAMDYLSQYNWPGNVRELKNI 367 Query: 423 IYRALTQLDGYELRPQDIL-LPDYDAATVAVGEDA--MEGSLDEITSRFERSVLTQLYRN 479 + RA+ EL ++ L D + + D+ ++ + I + + T L + Sbjct: 368 MQRAVVMGSSEELGLENFTSLIDIKKSEHTMCNDSVNIKKNGQSIEDAEKELIFTTLEKT 427 Query: 480 YPSTRKLAKRLGVSHTAIANKLREYGLSQ 508 + K A L ++ + NKL +Y ++Q Sbjct: 428 GGNKTKAAGLLKITTRTLRNKLNKYVIAQ 456 >UniRef50_A1HSK4 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HSK4_9FIRM Length = 628 Score = 210 bits (534), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 111/240 (46%), Positives = 151/240 (62%), Gaps = 26/240 (10%) Query: 210 SPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPED 269 +P M+ V+++A++ A + A +LI G+TG GK+ FA+A H ASPR P++A+NCA+IP Sbjct: 323 APAMRAVIDEARRFAAVDATILIQGETGVGKEYFAHAIHAASPRRYGPFVAVNCAAIPAT 382 Query: 270 AVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFR 321 +ESELFG+A GK G FEQA+GG++ LDEIGEM+ +QA+LLR L + Sbjct: 383 VLESELFGYAEGAFTGAKKGGKVGLFEQAHGGTIFLDEIGEMAEELQARLLRVLQEHEIY 442 Query: 322 RVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLT 381 R+G+D + VD+RVI AT ++L +V G FREDLYYRL+VL L +PPLR QDI Sbjct: 443 RIGDDRVIPVDIRVIAATNRDLRAMVAAGRFREDLYYRLDVLALEVPPLRARKQDI---- 498 Query: 382 ELFVARFADE---------QGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDG 432 LFV +F DE QG+ LA +L Y WPGNVR+L N + R + G Sbjct: 499 PLFVRKFIDEFNHKYRRAVQGIDDEGLA-----LLAAYDWPGNVRELHNVVDRLMALAAG 553 >UniRef50_C4XT50 Fis family transcriptional regulator n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XT50_DESMR Length = 480 Score = 210 bits (534), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 123/331 (37%), Positives = 174/331 (52%), Gaps = 30/331 (9%) Query: 201 SAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLA 260 + +A + MK +++ +++A A L+ G+TG GK+LFA H+ASPR KP++ Sbjct: 148 GGITSFIAENSAMKRLMDLLRRVAATDAVALVLGETGVGKELFARMIHEASPRREKPFVK 207 Query: 261 LNCASIPEDAVESELFGHAP--------EGKKGFFEQANGGSVLLDEIGEMSPRMQAKLL 312 ++CASIPE+ +ESELFG+AP +G+ GFFE A GG++ LDEIGEM +Q+KLL Sbjct: 208 VDCASIPENLIESELFGYAPGAFTGAHPKGRVGFFEMAEGGTIFLDEIGEMPLPLQSKLL 267 Query: 313 RFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRD 372 R L D VG +VRVI AT +NL + G FR DL++RL V L +PPLRD Sbjct: 268 RVLQDRELTPVGSSKSRKTNVRVIAATNRNLEAEAKVGTFRSDLFFRLRVAVLEIPPLRD 327 Query: 373 CPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDG 432 P DI+PL +F+ RF R L+ + +L Y WPGNVR+L+N I + D Sbjct: 328 RPDDILPLARMFLQRFGSRY-RKRTTLSLESERILAHYNWPGNVRELENLIEGLVITCDS 386 Query: 433 YELRPQDILLPDYDAATVAVGEDA--------------------MEGSLDEITSRFERSV 472 + D L + DA E E+ + FER Sbjct: 387 GRIE-ADELPTAMRVTECPLASDAPRPTGPATLAPPPMAAPEPDWERPYKEVIAAFERDY 445 Query: 473 LTQLYRNYPSTRKLAKRLGVSHTAIANKLRE 503 L ++ S + AKRLG+ T I KL++ Sbjct: 446 LEGAIEHFGSVGEAAKRLGLDRTTIFRKLKK 476 >UniRef50_B2A1V9 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A1V9_NATTJ Length = 585 Score = 210 bits (534), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 118/329 (35%), Positives = 183/329 (55%), Gaps = 25/329 (7%) Query: 203 FSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALN 262 F IV S K+ E A+ + + +LI G++GTGK+LFA+A H S R ++ +N Sbjct: 258 FENIVGSSKKIIEAKEMAKIASQSDSTVLIRGESGTGKELFAHAIHDGSLRRYGAFIRVN 317 Query: 263 CASIPEDAVESELFGHAP--------EGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRF 314 CA+IPE+ +E+ELFG+ EGK G FE ANGG++ LDEIG+M MQ KLLR Sbjct: 318 CAAIPENLLEAELFGYEKGAFTGANKEGKPGKFELANGGTIFLDEIGDMPFDMQVKLLRA 377 Query: 315 LNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCP 374 L + +R+G + + +DVR+I +T +NL +L+ + FREDLYYRLNV +N+PPLR+ Sbjct: 378 LQEREVQRIGSERVIDLDVRIIASTNRNLEQLIAQDKFREDLYYRLNVFNINVPPLREMK 437 Query: 375 QDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYE 434 D+ L + DE G+ ++++ N +L Y WPGN+R+LKN + R++ G Sbjct: 438 DDLEKLINFIIKDLNDEMGLNVNGVSSEANKILNSYHWPGNIRELKNVLERSMNVAKG-N 496 Query: 435 LRPQDILLPDYDAATVAVGEDAMEGS-------------LDEITSRFER-SVLTQLYRNY 480 + +D +P Y T A E+ S L + E+ ++ T L + Sbjct: 497 IITKD-CIPQY-LLTWAGAEEQQNNSNSKSHEINLHNLELRSVVKEAEKLAIETALKQTN 554 Query: 481 PSTRKLAKRLGVSHTAIANKLREYGLSQK 509 + +K A+ L + + + KL EY +S + Sbjct: 555 NNKKKAAELLNIHRSGLYKKLEEYNISDQ 583 >UniRef50_Q1IQW5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidobacteria RepID=Q1IQW5_ACIBL Length = 461 Score = 210 bits (534), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 124/312 (39%), Positives = 176/312 (56%), Gaps = 14/312 (4%) Query: 205 QIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCA 264 +IV M+ V+ Q ++A A + I G+TGTGK+L A H+ SPR P++ LNCA Sbjct: 140 EIVWKGEAMRRVMAQIDRVAASEARVCIYGETGTGKELAARTLHEKSPRKAGPFITLNCA 199 Query: 265 SIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLND 317 ++P + +ESELFGH A + G FEQA+ G++ LDEIG+M MQAKLLR L + Sbjct: 200 AVPAELIESELFGHEKGSFTGAAQRHIGKFEQAHRGTLFLDEIGDMPLAMQAKLLRVLEE 259 Query: 318 GTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDI 377 G RVG D + VDVRVI AT +NL +LV++G FR+DL++R+ V L LPPLR +DI Sbjct: 260 GEVERVGGDKSIPVDVRVIVATHRNLEDLVKEGKFRQDLFHRVYVFPLILPPLRTRREDI 319 Query: 378 MPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYEL-- 435 L E F A+ + G A+ L RY+WPGNVR+++N + R L E+ Sbjct: 320 PVLLEHFAAQVCLQNGWKPVPFTAEAVEALQRYSWPGNVREMRNVVERLLLLAVAGEVDR 379 Query: 436 RPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSV-LTQLYRNYPSTRKLAKRLGVSH 494 ++ LP+ AT D G L +++ER V L +L R AK LG+ Sbjct: 380 ATVELALPEAQTAT----SDTGSGPLSSRVAQYEREVILAELQRQKHHITNTAKALGLER 435 Query: 495 TAIANKLREYGL 506 + + K + G+ Sbjct: 436 SHLYKKCQALGI 447 >UniRef50_Q316Q6 Putative transcriptional regulator, Fis family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q316Q6_DESDG Length = 633 Score = 210 bits (534), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 132/380 (34%), Positives = 194/380 (51%), Gaps = 31/380 (8%) Query: 148 EHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDV----SAF 203 E V + G + +T D D + T V R ++ + A D F Sbjct: 258 ELVTVGGSKLAVTVTGTMHDDAMDALICTFHDV--RQIEQLEHSFRKSAKPDTPTARHTF 315 Query: 204 SQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNC 263 S IV SP M + +A++ A + +L+ G+TGTGK+LFA + H SPRA ++A+NC Sbjct: 316 SSIVHRSPAMHRCIARAEQFAATQSSILLVGETGTGKELFAQSIHNHSPRAQGNFVAINC 375 Query: 264 ASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFL 315 ++PED +ESELFG+A GK G FE A+ G++ LDE+ SP++Q +LLR L Sbjct: 376 GALPEDLLESELFGYAGGAFTGALKSGKAGMFELAHNGTLFLDEVNATSPKLQTRLLRTL 435 Query: 316 NDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQ 375 + RVG + V+VRVI A+ L V G FR DL+YRLNVL + +PPLR+ P+ Sbjct: 436 QEHEVMRVGSTAVIPVNVRVIAASNAPLEAEVSAGRFRADLFYRLNVLDIRIPPLRERPE 495 Query: 376 DIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKN-----AIYRALTQL 430 DI+ L +F+ RF+ EQ P + + + WPGNVR+L+N AI Sbjct: 496 DILLLFNMFLERFSAEQHRSTPPVPRGTERKIMAHGWPGNVRELQNYAEKYAILYPEEAA 555 Query: 431 DGYELRP---------QDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYP 481 G ++ P + P Y A V D + G+L++IT +VL + N Sbjct: 556 LGADITPWTPHAALTAEHAHTPAYGTAAAPVSRDLLHGTLEDITRAAVAAVLHEENGNLS 615 Query: 482 STRKLAKRLGVSHTAIANKL 501 S A+RLG+S + +L Sbjct: 616 SA---ARRLGISRNTLRRRL 632 >UniRef50_C8WE21 Transcriptional regulator, NifA, Fis Family n=4 Tax=Alphaproteobacteria RepID=C8WE21_ZYMMN Length = 568 Score = 210 bits (534), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 122/282 (43%), Positives = 167/282 (59%), Gaps = 19/282 (6%) Query: 175 LTGAVVMLRSTIR-----MGRQLQNVAAQDVS--AFSQIVAVSPKMKHVVEQAQKLAMLS 227 L G L IR + RQ + A Q +I+ SP ++ ++E+ +A + Sbjct: 177 LLGQTARLHQMIRREHEFLLRQSSHTAPQQAEDMPHPRIIGDSPIIRSILEKINLIAKNN 236 Query: 228 APLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH-------AP 280 +L+ G++GTGK+LFA A HQASPR G P++ LNCA++PE +ESELFGH A Sbjct: 237 VTVLLRGESGTGKELFAQAIHQASPRKGLPFIKLNCAALPESVLESELFGHEKGAFTGAA 296 Query: 281 EGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQ 340 + +KG FE A+GG++ LDEIGE+SP QAKLLR L +G F RVG + V+VRVI AT Sbjct: 297 QMRKGRFELADGGTLFLDEIGEISPNFQAKLLRVLQEGEFERVGGTKTLKVNVRVIAATN 356 Query: 341 KNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLA 400 NL E V +G FR DLYYRL+V+ + LPPLR+ P DI L + F+ F E + L Sbjct: 357 VNLEEAVSRGNFRADLYYRLSVIPIFLPPLREHPSDIPLLAKEFLRHFNLEN---KTHLT 413 Query: 401 ADLNT--VLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDI 440 D N VL+ +PGN+R+L+N I R T E+ +D Sbjct: 414 IDQNALDVLSHCYFPGNIRELENCIRRTATLARNTEITAEDF 455 >UniRef50_B8FXN8 Putative sigma54 specific transcriptional regulator n=2 Tax=Desulfitobacterium hafniense RepID=B8FXN8_DESHD Length = 574 Score = 210 bits (534), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 135/454 (29%), Positives = 239/454 (52%), Gaps = 40/454 (8%) Query: 82 LSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLIN-GFNFLRWLES 140 L A++E++ + ++ + AN A Q+ G + +LIN G+ E Sbjct: 128 LDAIIESVADGIVVGSADGMILRANSAYLQITGIQEKEFVGKNVRELINQGYMNKSVTEM 187 Query: 141 EPQDSHNEHVVI--NGQNFLMEITPVYLQDENDQHVLTGAVVMLR--------------- 183 + +VV +G+ LM PV+ N++ +T V ++R Sbjct: 188 VFRTKSRVNVVDIRSGKELLMTGAPVF----NEEKEVTRVVTIVRDISELTELKGKLEQA 243 Query: 184 --STIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKD 241 + R ++L++ +Q+ AF +I+ + M+ ++ A +A + + +LI G++G GK+ Sbjct: 244 EDAKNRYLKELEHFRSQN--AFKKIITKNNDMQKKLDTAYHVARVDSTVLILGESGVGKE 301 Query: 242 LFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAP--------EGKKGFFEQANGG 293 L A H+AS R+ KP++ +NC +IP + +ESE FG+ EGKKG FE A+GG Sbjct: 302 LIAQLIHRASHRSEKPFIKINCGAIPANLLESEFFGYEAGSFTGALKEGKKGLFELADGG 361 Query: 294 SVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFR 353 ++ LDE+GE+ Q K+LR + + RVG + +D+R+I AT ++L ++++ FR Sbjct: 362 TLFLDEVGELPLEHQVKVLRAIQEKEILRVGGKKTIKLDIRIIAATNRDLEAMIREKAFR 421 Query: 354 EDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWP 413 EDLYYRLNV+ + +PPLR +D++P+ +AR+ G + + ++ L Y WP Sbjct: 422 EDLYYRLNVVPMTIPPLRQRKEDVIPIALELLARYNTAYGYQKW-IHPEVMDCLLNYDWP 480 Query: 414 GNVRQLKNAIYR-ALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSV 472 GN+R+L+N I R +T +D + + D G +++ L+ + E + Sbjct: 481 GNIRELENTIERLVVTSMDDCITKDAMAEIKYIDVHPAPNGLTSLKAFLE----KEENRL 536 Query: 473 LTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 L + YR STRK A LG+S +++ K+++YG+ Sbjct: 537 LEEAYRLMGSTRKAAAVLGISQSSMVKKMKKYGI 570 >UniRef50_A1HRA8 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRA8_9FIRM Length = 621 Score = 210 bits (534), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 126/314 (40%), Positives = 176/314 (56%), Gaps = 21/314 (6%) Query: 203 FSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALN 262 F IV SP+++H V AQ+ A + +LI G+TGTGK++FA + H AS RA P++A+N Sbjct: 318 FEDIVGDSPQIRHTVHIAQEFAQTHSSVLILGETGTGKEVFAQSIHNASARANGPFVAIN 377 Query: 263 CASIPEDAVESELFGH--------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRF 314 CA++P +ESELFG+ + +GK G FE A+GG++ LDEI EM Q KLLR Sbjct: 378 CAALPSQILESELFGYVGGAFTGASQKGKPGLFELAHGGTIFLDEIAEMDYVTQGKLLRV 437 Query: 315 LNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCP 374 L + R+G D + VDVRVI AT +NL LV++ FR DLYYRLNVL L LPPLR+ Sbjct: 438 LQEKKVMRLGSDRVIPVDVRVIAATNQNLSRLVRENKFRADLYYRLNVLRLKLPPLRERG 497 Query: 375 QDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYE 434 DI+ E F+ + + Q A L L R+ WPGNVR+L+N I R + Sbjct: 498 ADIIRYAEFFLEKHSAAQNRRLAFTPAALER-LARHPWPGNVRELQNTIERIVAVCR--- 553 Query: 435 LRPQDILLPDYDAATVA-VGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKR-LGV 492 P DA VA + ED + ++ + E+ + Q + A R LGV Sbjct: 554 -------QPQVDAGLVAQMLEDDADSGIEVAAADSEKEQIRQALAIAKGKQGEAARLLGV 606 Query: 493 SHTAIANKLREYGL 506 S + + K+++ GL Sbjct: 607 SRSTLWRKMKKLGL 620 >UniRef50_B8FXH0 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FXH0_DESHD Length = 703 Score = 210 bits (534), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 117/313 (37%), Positives = 181/313 (57%), Gaps = 13/313 (4%) Query: 203 FSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALN 262 F I+ SP+MK A + + ++ +LI G++GTGK++F++A H++S R+ PY+ +N Sbjct: 393 FDDIIGESPRMKKAKSLAHRASQTTSTILILGESGTGKEVFSHAIHKSSIRSNGPYIKVN 452 Query: 263 CASIPEDAVESELFGH--------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRF 314 CA++PED +ESELFG+ GK G FE A+ G++ LDEIG+MS MQAKLLR Sbjct: 453 CAALPEDLLESELFGYDEGAFTGARKGGKPGKFELADKGTIFLDEIGDMSLGMQAKLLRV 512 Query: 315 LNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCP 374 L + R+G + VDVR+I AT ++L ++V + FR DLYYRLNVLT++LPPLR+ Sbjct: 513 LQERELERLGGTEPIKVDVRIIAATNRDLHKMVMEHKFRLDLYYRLNVLTIDLPPLRERK 572 Query: 375 QDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYE 434 +DI + + + G + + T L Y WPGN+R+L+N + RA+ D Sbjct: 573 EDIGFIARGLIEKINKRLGTDIQGVRPESITHLCAYDWPGNIRELENILERAIVICDEAW 632 Query: 435 LRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKR-LGVS 493 + P+ + LP T+ +G E +L+ ER +L + R + A R LG+ Sbjct: 633 ILPKHLALPGV-METITLG---AEQTLEYALQAAEREILDKTLRRVQGNKVQAARILGIH 688 Query: 494 HTAIANKLREYGL 506 + + KL +Y + Sbjct: 689 RSVLYKKLAKYNI 701 >UniRef50_D2MLD9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MLD9_9BACT Length = 480 Score = 209 bits (533), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 127/335 (37%), Positives = 193/335 (57%), Gaps = 24/335 (7%) Query: 203 FSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALN 262 F +V + +M+ V+E+ + +A A +LI G++GTGK++ A A H+ SPR G+ + ++ Sbjct: 140 FDGMVGKNERMRQVLEKVKLVATTDATVLIFGESGTGKEVIANAIHRNSPRCGQALIKVS 199 Query: 263 CASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFL 315 CA++PE +E+ELFGH A + + G FE A+ G++ LDEIGE++P +Q KLLR L Sbjct: 200 CAALPETLLEAELFGHERGAFTGALKQRLGRFELAHKGTLFLDEIGEIAPMVQVKLLRVL 259 Query: 316 NDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQ 375 + F RVG + DVR++CATQKNL E V+ G FREDL+YRLNV+ + LPPLR+ + Sbjct: 260 QEKRFERVGGTETIGSDVRLVCATQKNLKEEVEAGRFREDLFYRLNVVQVALPPLRERKE 319 Query: 376 DIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALT-QLDGYE 434 DI+ L E + R + VL Y++PGNVR+L+NAI RA+ +G E Sbjct: 320 DILVLAEHLLQRSTSRVQRVMKGFSVAARDVLLHYSFPGNVRELENAIERAVALAQEGDE 379 Query: 435 LRPQDI----LLP----------DYDAATVAVGEDAME-GSLDEITSRFERS-VLTQLYR 478 ++ D+ + P + V+ +A + G+L E+ R ER +L L R Sbjct: 380 IQAWDLCGQTVCPFLGGPLQSGCGFCQEGVSNVTNARQTGTLAEVRERCEREYILAVLER 439 Query: 479 NYPSTRKLAKRLGVSHTAIANKLREYGLSQKKNEE 513 S +K LG+S A+ K + YGL+ +E Sbjct: 440 EGWSRTAASKSLGLSRKALWEKCKRYGLATPDTDE 474 >UniRef50_A8MFU8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=A8MFU8_ALKOO Length = 469 Score = 209 bits (533), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 130/464 (28%), Positives = 229/464 (49%), Gaps = 31/464 (6%) Query: 76 EREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFL 135 +R +L + + VD + V N C G + + + I+ + Sbjct: 6 DRYKYIFDEILTMTDDGFIVVDREGVVTDINDQYCDFLGTSKENVIGRNIKETISNSKMI 65 Query: 136 RWLESEPQDSHNEHVVINGQ-----NFLMEITPVYLQDENDQHVLTGAVVMLR------- 183 +++ ++ H ++G+ N + ++ + DE + + + A V R Sbjct: 66 DIMKNACREEGAIHKFVDGETKEVDNKFLLVSRSCVFDEKQEVIASVAQVKFRLQTLDCA 125 Query: 184 -------STIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDT 236 S + R+ N + + F ++ +S + + + + A S P+L+TG+T Sbjct: 126 QKLMKEYSALEFYREEYNKISTNQYTFDGMIGISKRFLGIKKMGMRAAKNSFPVLLTGET 185 Query: 237 GTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPEGK---------KGFF 287 GTGK++FA A H S R+ KP +++NC +IP + +ESELFG+ EG G F Sbjct: 186 GTGKEVFARAIHNGSDRSSKPMVSINCGAIPSELLESELFGY-EEGSFTGAKKGGKIGKF 244 Query: 288 EQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELV 347 QA+GG++ LDEIG+M P MQ KLLR L + ++G V VD+RVI AT++NLV++V Sbjct: 245 IQADGGTIFLDEIGDMPPDMQVKLLRVLQEKEVDKIGGTEPVSVDIRVIAATRQNLVKMV 304 Query: 348 QKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVL 407 ++G FREDLYYRLNV+ + + PLR+ +DI+ F+ + E L+ ++ Sbjct: 305 REGKFREDLYYRLNVINIEMIPLRERREDILIFANYFLNKINIEYKT-NTTLSKEVKRCF 363 Query: 408 TRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSR 467 Y+WPGN+R+L N I + D + ++ D+ + V + E L + Sbjct: 364 QGYSWPGNIRELDNVIRSSYASCDEFIIQLTDLPAKMVSSHNVNSFSGSGEKMLKNMVDS 423 Query: 468 FERSVLTQLYRNYPSTRKL-AKRLGVSHTAIANKLREYGLSQKK 510 +E S++ ++ + +L A LG+ + + K+ ++G+ KK Sbjct: 424 YESSIIKEVLKKCNWNCQLTANELGIHRSLLYKKMDKFGIKVKK 467 >UniRef50_C6PSK3 Putative sigma54 specific transcriptional regulator n=2 Tax=Clostridium RepID=C6PSK3_9CLOT Length = 607 Score = 209 bits (533), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 102/243 (41%), Positives = 151/243 (62%), Gaps = 15/243 (6%) Query: 188 MGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYAC 247 + ++L+N F I S MK + A+K+A LI G++GTGK+L A + Sbjct: 257 LNKKLRNKGLVAKYNFDYIKTCSTSMKECINLARKIASSDLTALIIGESGTGKELLAQSI 316 Query: 248 HQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDE 299 H ASPRA +P++A+NCA++PE+ +ESELFG+ EGK G FEQAN G++ LDE Sbjct: 317 HSASPRAKQPFVAINCAALPENLLESELFGYEGGSFTGALKEGKIGLFEQANNGTIFLDE 376 Query: 300 IGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYR 359 IG+M +QA++LR L + R+G + ++VRVI AT + L+E+V +G FREDL+YR Sbjct: 377 IGDMPLSLQARILRVLQERQVMRIGSQSVIDINVRVISATNRKLMEMVDQGKFREDLFYR 436 Query: 360 LNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQL 419 LNVL +N+PPLR+ DI+ + F+ R K++ ++ +L Y WPGNVR+L Sbjct: 437 LNVLPINIPPLRERKDDIISTMKDFITR-------KELKISDEVKNILLNYRWPGNVREL 489 Query: 420 KNA 422 +N Sbjct: 490 QNV 492 >UniRef50_C6NWM8 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Proteobacteria RepID=C6NWM8_9GAMM Length = 447 Score = 209 bits (533), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 133/397 (33%), Positives = 212/397 (53%), Gaps = 16/397 (4%) Query: 116 KLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVL 175 + D + + Q ++G+ L L ++P H V++ + E D V Sbjct: 49 QFDLILSDAQMQPMDGYGLLAALRAQP--GHPPVVMMTAWGTIDEAVRALQNGAVDYLVK 106 Query: 176 TGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGD 235 A+ L + ++ +LQ A + +A SP M + +A+++A A +L+TG+ Sbjct: 107 PFAMQELLTKLQRHERLQP------GAELEPLAHSPVMLETLIKARRVAQTEASVLLTGE 160 Query: 236 TGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGFFE 288 +G GK++ A H+ S RA +P++A+NCA+IPE +E+ LFGH A + G FE Sbjct: 161 SGVGKEVLARFIHRESNRAREPFVAVNCAAIPESLLEATLFGHEKGAFTGASQSSPGKFE 220 Query: 289 QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQ 348 QA GG++LLDE+ EM+ +QAKLLR L + RVG + +DVRVI + ++L + V Sbjct: 221 QAQGGTLLLDEVTEMALPLQAKLLRVLQERELERVGGRRTIRLDVRVIATSNRDLRQAVS 280 Query: 349 KGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLT 408 +G FREDLYYRL V+ L +PPLR +DI+PL + +A+ + + L + VL Sbjct: 281 EGKFREDLYYRLQVIPLCVPPLRQRREDILPLAQRLLAKHCERMAIAPKSLDPEAQAVLL 340 Query: 409 RYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRF 468 Y WPGNVR+L NA+ RA +R D+ L A E + L+++ SR Sbjct: 341 SYPWPGNVRELDNALQRAAIFSADTVIRSDDLGLEIRGTLDDARSEGSSRPILEDVRSRQ 400 Query: 469 ERSVLTQLYRNYPSTR-KLAKRLGVSHTAIANKLREY 504 E+ + + R +R + A+RLG+S + +KL+ Y Sbjct: 401 EQETIVSVLRECRGSRNEAARRLGISPRTLRHKLQRY 437 >UniRef50_UPI0001BC5B22 signal-transduction and transcriptional-control protein n=1 Tax=Fusobacterium ulcerans ATCC 49185 RepID=UPI0001BC5B22 Length = 577 Score = 209 bits (533), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 115/316 (36%), Positives = 183/316 (57%), Gaps = 21/316 (6%) Query: 205 QIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCA 264 +I+ VS K+ + E+ Q +A ++ + ITG++GTGK+L A A H S R P++A NCA Sbjct: 269 KILGVSSKIMSIKEKIQIIAPSASSVFITGESGTGKELVATALHSESERKNFPFIAFNCA 328 Query: 265 SIPEDAVESELFGHAP--------EGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLN 316 SIPE+ +ESELFG+ +G+ G FE ANGG++ LDE+G+M +Q KLLR L Sbjct: 329 SIPENLLESELFGYVKGAFTGADNKGRIGIFEAANGGTLFLDEVGDMPSYLQVKLLRVLE 388 Query: 317 DGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQD 376 R+G + + +DVR+I AT KN+ ELV KG FREDLYYRLNV+ + LPPLR+ +D Sbjct: 389 RKEITRLGSNQVIKIDVRLIAATNKNMEELVTKGEFREDLYYRLNVIPIKLPPLRERKED 448 Query: 377 IMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRAL-----TQLD 431 I L + F+ +++ + + + Y+WPGNVR+L+N++ + T++ Sbjct: 449 IKILAKNFIDKYSSILNKTVSGIDQNFWRKMEEYSWPGNVRELQNSMEYVVNMMKYTEVI 508 Query: 432 GYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRK-LAKRL 490 + L P +L + + E+ +L+ + R +L +Y P ++ +AK+L Sbjct: 509 NFRLLPHKVL-----GKHITIDEEE-NFNLEHMEKRMIEKLLN-IYGYSPEAKQEIAKKL 561 Query: 491 GVSHTAIANKLREYGL 506 G+ + K++ Y L Sbjct: 562 GIGIATLYRKIKVYEL 577 >UniRef50_D0MD30 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MD30_RHOM4 Length = 442 Score = 209 bits (533), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 105/244 (43%), Positives = 152/244 (62%), Gaps = 12/244 (4%) Query: 206 IVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCAS 265 IV S +++V+++A+ +A +L+ G++G GK+L A+A H SPR P++ +NC + Sbjct: 12 IVGQSAAIRNVIDRARMVARTDITVLLQGESGVGKELIAHAIHGMSPRRHGPFVIVNCGA 71 Query: 266 IPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDG 318 IPE +ESELFG A E +KG+FE+A+GG++ LDEIGEM Q +LLR L G Sbjct: 72 IPEGLIESELFGAEKGAYTGAVERRKGYFEEADGGTIFLDEIGEMPLAAQVRLLRVLETG 131 Query: 319 TFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIM 378 F RVG + DVR+I AT K+L + V+ G FREDLYYR++ + + +PPLR+ +DI+ Sbjct: 132 EFTRVGSSRPIKTDVRIIAATNKDLAKAVRAGHFREDLYYRISTVIIEIPPLRERREDII 191 Query: 379 PLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKN-----AIYRALTQLDGY 433 PL E F+ R A G P +L +L RY WPGNVR+L+N A+ T + Sbjct: 192 PLFEYFLHRAAQRYGTPLRRLDESARQLLLRYHWPGNVRELRNVAEQVAVLLTKTTITAE 251 Query: 434 ELRP 437 +LRP Sbjct: 252 DLRP 255 >UniRef50_Q5P3C3 Sigma-54 dependent DNA-binding response regulator n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5P3C3_AZOSE Length = 447 Score = 209 bits (533), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 149/445 (33%), Positives = 231/445 (51%), Gaps = 32/445 (7%) Query: 82 LSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLR----- 136 L L++L E VL +D +V N A+ ++ G RL + L G R Sbjct: 7 LRVFLDSLEEGVLFLDRARRVLEMNSAAARMIGHDNRRLVDELCPTLFEGTECARACVAR 66 Query: 137 ----WLESEPQDSHNEHVVIN--GQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGR 190 ++ +D + VV + G + + + + L ND + V+ RS R Sbjct: 67 GECSLTPTKGEDKVQDIVVRSPTGVDIPLRMWAMLLPP-NDSGLYCAIVLRDRS-----R 120 Query: 191 QLQ-NVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQ 249 +L+ +D + S M+ + ++ ++A A +LITG++G GK+L A A H Sbjct: 121 ELELEAEVRDRWQLGGLTGRSRAMQDLYQKVLRVAASEANVLITGESGVGKELVARALHD 180 Query: 250 ASPRAGKPYLALNCASIPEDAVESELFGHAPE-------GKKGFFEQANGGSVLLDEIGE 302 S RA PY+A++CAS+PE+ ESELFGHA + G FE ANGG++LLDEIGE Sbjct: 181 NSTRAKGPYVAVHCASLPENLEESELFGHAKGSFSGATGARLGRFEAANGGTLLLDEIGE 240 Query: 303 MSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNV 362 +SP Q +LLR L + RVGE+H VDVRV+ AT ++L +V +G FREDLYYRL+V Sbjct: 241 ISPATQTRLLRVLQEREIVRVGENHPRKVDVRVVAATHRDLAGMVGRGEFREDLYYRLHV 300 Query: 363 LTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNA 422 L L++P LR+ +DI L + + P +L+ + + ++WPGNVRQL NA Sbjct: 301 LPLHVPALRERREDIALLASRLLGELGERYRRPDLRLSPEAIVAMESFSWPGNVRQLFNA 360 Query: 423 IYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSL-----DEITSRFERSVLTQLY 477 + A+ DG + PQ LLP+ + E + L ++T E++ + ++ Sbjct: 361 LEYAVVNSDGATILPQH-LLPEVVTPVESTREALLPLPLTRYYATQVTPDEEQAQIQRML 419 Query: 478 RNYPSTR-KLAKRLGVSHTAIANKL 501 + R + A+RLG+S T + +L Sbjct: 420 QQCGGNRAEAARRLGMSRTTLWKRL 444 >UniRef50_Q0VSC9 Sigma-54 dependent DNA-binding response regulator n=12 Tax=Proteobacteria RepID=Q0VSC9_ALCBS Length = 464 Score = 209 bits (533), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 112/318 (35%), Positives = 184/318 (57%), Gaps = 17/318 (5%) Query: 206 IVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCAS 265 ++ +P M + Q +KLA AP+ I+G++G+GK+ A H PR KP++A+NC + Sbjct: 136 LIGDAPSMVALKSQVRKLARSQAPIYISGESGSGKERIARLIHTLGPRREKPFVAVNCGA 195 Query: 266 IPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDG 318 IP + +ESE FGH A E +KG F +A+GG++ LDE+ ++ MQ KLLR + + Sbjct: 196 IPSELMESEFFGHRKGAFTGAVEDRKGLFREADGGTLFLDEVADLPLHMQVKLLRAIQEK 255 Query: 319 TFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIM 378 + R VGE E V++R++CAT KNL + +++G FR+DL+YRLNV+ ++PPLR+ +DI Sbjct: 256 SVRPVGEAKEFQVNLRILCATHKNLEDEMEEGRFRQDLFYRLNVIEAHVPPLRERREDIP 315 Query: 379 PLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQ 438 L + R + +P P +++D + YA+PGNVR+L+N + RALT DG + P+ Sbjct: 316 KLVRHILDRLSQAWEIPPPSVSSDAVNAIGNYAFPGNVRELENTLERALTLCDGNTILPE 375 Query: 439 DILLPDYDAATVAVGEDA---------MEGSLDEITSRFERS-VLTQLYRNYPSTRKLAK 488 + LP + + E SL+E E+ +L L + + AK Sbjct: 376 HLRLPSNRSGLASNRSSTSTSPPPIRPSEQSLEEFLQEIEKQEILKALDTTHWNRTAAAK 435 Query: 489 RLGVSHTAIANKLREYGL 506 +LG++ ++ +L++ L Sbjct: 436 KLGMTFRSLRYRLKKLEL 453 >UniRef50_B3QSR6 Transcriptional regulator, NifA, Fis Family n=2 Tax=Bacteria RepID=B3QSR6_CHLT3 Length = 557 Score = 209 bits (532), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 106/246 (43%), Positives = 151/246 (61%), Gaps = 12/246 (4%) Query: 204 SQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNC 263 + I+ + M+ V + K+A +A +LI G++G GK+L A A H S RA P++ NC Sbjct: 241 ANIIGNAKSMRVVFKMIDKIAPTNATVLILGESGVGKELVANAIHYKSQRAASPFIKFNC 300 Query: 264 ASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLN 316 A++PE VESELFGH A +KG FE AN G++ LDE+GE+S +QAKLLR L Sbjct: 301 AALPESIVESELFGHERGAFTGASATRKGRFELANTGTIFLDEVGELSLSIQAKLLRILQ 360 Query: 317 DGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQD 376 + F RVG + + DVR+I AT +NL E +Q+G FREDL+YRLN+ + +PPLR+ D Sbjct: 361 EKEFERVGGNKTIKADVRIIAATNRNLEEEIQEGKFREDLFYRLNIFPVTVPPLRERKSD 420 Query: 377 IMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLD----- 431 I+ L + FV ++ G +++ +L RY WPGNVR+L+N + RA+ D Sbjct: 421 ILLLADYFVEKYNQMNGKGVRRISTTAIDMLMRYHWPGNVRELENCVERAVILSDDGVIH 480 Query: 432 GYELRP 437 GY L P Sbjct: 481 GYHLPP 486 >UniRef50_D2U436 Two-component system, NtrC family, nitrogen regulation response regulator n=2 Tax=Proteobacteria RepID=D2U436_9ENTR Length = 475 Score = 209 bits (532), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 127/341 (37%), Positives = 188/341 (55%), Gaps = 34/341 (9%) Query: 200 VSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYL 259 +A S+I+ +P M+ V +L+ S +LI G++GTGK+L A A H+ SP+A P++ Sbjct: 136 TAAVSKIIGEAPAMQEVYRIIGRLSRSSISVLINGESGTGKELIADALHRHSPKATGPFI 195 Query: 260 ALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLL 312 ALN A+IP+D +ESELFGH A + ++G FEQA+GGS+ LDEIG+M +Q +LL Sbjct: 196 ALNMAAIPKDLIESELFGHEKGAFTGASQVRQGRFEQAHGGSLFLDEIGDMPLDIQTRLL 255 Query: 313 RFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRD 372 R L +G F RVG + VDVR+I AT + L +LVQ+G FREDL++RLNV+ + LPPLR+ Sbjct: 256 RVLAEGQFYRVGGYTPIKVDVRIIAATHQCLEQLVQEGKFREDLFHRLNVIRIPLPPLRE 315 Query: 373 CPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDG 432 +DI L F+ + A + GV LA T+L W GNVRQL+N Sbjct: 316 RTEDIPHLARYFLHQTAQQLGVESKILAPQTETILMSLPWSGNVRQLENVCSWLTVMSSS 375 Query: 433 YELRPQDI-------------------------LLPDYDAATVAVGEDAMEGSLDEITSR 467 + PQD+ L P + A+ E+ + L ++ + Sbjct: 376 QMILPQDLPSDLQQNQQFLYSPKKTLATNNEKWLDPLANWTKTAL-ENNKQNLLQQVLPQ 434 Query: 468 FERSVL-TQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 ER++L L ++ A+ LG + KL+E+G+S Sbjct: 435 IERTMLECALTYTKGHKQEAARLLGWGRNTLTRKLKEFGMS 475 >UniRef50_C5EGH7 Sigma-54 dependent transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EGH7_9FIRM Length = 698 Score = 209 bits (532), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 122/359 (33%), Positives = 192/359 (53%), Gaps = 25/359 (6%) Query: 82 LSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESE 141 L+ L+ + E ++ D+ +V + N + QL + ++++ GFN L Sbjct: 213 LNTLMNLMNEGIIITDVVGRVYLCNEKARQLMSHR---------SRVLLGFNIEELLPEL 263 Query: 142 PQDSHNEHVVINGQ-NFLMEITPVYLQDENDQHVLTGAVVMLRSTIR--MGRQLQNVAAQ 198 S E ++ G+ N + + D+ H++T T + M +L + + Sbjct: 264 DVKSAWEKLIKTGESNLIASAVEIRSGDKVAGHIITLKDFEEAETRQHDMRSKLYGTSHR 323 Query: 199 DVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPY 258 F I+ S ++ V +++A A ++ITG++GTGK++FA H S R + Sbjct: 324 ARYTFEDIIGTSRAIREAVNNGRQMARSDAAVMITGESGTGKEMFAQGIHNESARKNYNF 383 Query: 259 LALNCASIPEDAVESELFGH--------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAK 310 +A+NCA+IP+ +ESE+FG+ GK G+FE A+ G++ LDEIGEM +Q+K Sbjct: 384 VAVNCAAIPDSLLESEMFGYEEGSFTGAKKGGKMGYFELAHRGTIFLDEIGEMPMSLQSK 443 Query: 311 LLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPL 370 LLR L + R+G D + VDVRVI AT K+L +V+ G FREDL+YRLNVL LN+PPL Sbjct: 444 LLRVLEERKVDRIGSDKSIDVDVRVIAATNKDLFTMVENGGFREDLFYRLNVLPLNVPPL 503 Query: 371 RDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQ 429 R+ QDI+P+ F R + L + +LT Y W GNVR+L+N + LT+ Sbjct: 504 RERTQDILPIFYFFAGRNRSDMA-----LTPEAEAILTGYPWRGNVRELRNVVEFLLTK 557 >UniRef50_A3WNQ8 Response regulator containing CheY-like receiver, AAA-type ATPase,and DNA-binding domains n=2 Tax=Idiomarina RepID=A3WNQ8_9GAMM Length = 448 Score = 209 bits (532), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 106/242 (43%), Positives = 153/242 (63%), Gaps = 7/242 (2%) Query: 206 IVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCAS 265 ++ SP M+ + Q ++L +LITG++GTGK+L A A H+ S R K + A+NCA Sbjct: 140 LIGQSPAMRKLYHQIERLGTAGGSVLITGESGTGKELVARAIHELSERRDKSFQAVNCAG 199 Query: 266 IPEDAVESELFGH------APEGKK-GFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDG 318 IP + +ESE FGH +GK+ G F+Q +GG++LLDEIGEM +QAKLLR L +G Sbjct: 200 IPSELMESEFFGHTQGAFTGAQGKRLGLFKQVDGGTLLLDEIGEMPLALQAKLLRVLQEG 259 Query: 319 TFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIM 378 T R VG D E VDVR+I AT +NL + V+ G FREDL+YRL ++ +P LR+ +D+ Sbjct: 260 TLRAVGSDEEEKVDVRIIAATHQNLEQRVRDGEFREDLFYRLETFSVKVPALRERGEDVE 319 Query: 379 PLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQ 438 L F++ +A+ G + D +L RY +PGNVR+L+NAI RA+T + L+ Sbjct: 320 RLAHHFISVYAERAGKRITDIDTDALDILYRYRFPGNVRELQNAIERAVTFAQSHHLQVD 379 Query: 439 DI 440 D+ Sbjct: 380 DL 381 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q9ZIB7 Transcriptional regulatory protein tyrR n=263 Ta... 658 0.0 UniRef50_B4RUH9 Transcriptional regulatory protein tyrR n=6 Tax=... 655 0.0 UniRef50_Q15RI2 Transcriptional regulator, TyrR n=12 Tax=Bacteri... 649 0.0 UniRef50_UPI0000E0E363 sigma-54 dependent transcriptional regula... 618 e-175 UniRef50_Q3AAC4 Sigma-54 dependent transcriptional regulator n=2... 613 e-174 UniRef50_Q12L04 Transcriptional regulator, TyrR n=3 Tax=Shewanel... 607 e-172 UniRef50_A6FE33 Sigma-54 dependent transcriptional regulator Tyr... 595 e-168 UniRef50_A1HQW3 Sigma54 specific transcriptional regulator, Fis ... 584 e-165 UniRef50_B1JB99 Sigma-54 factor interaction domain-containing pr... 581 e-164 UniRef50_B2A3R3 PAS modulated sigma54 specific transcriptional r... 577 e-163 UniRef50_A0Q207 Transcriptional regulator n=3 Tax=Clostridium Re... 576 e-163 UniRef50_B8G264 Putative sigma54 specific transcriptional regula... 570 e-161 UniRef50_C6Q1R8 PAS modulated sigma54 specific transcriptional r... 561 e-158 UniRef50_A1VG32 Sigma54 specific transcriptional regulator, Fis ... 557 e-157 UniRef50_C4XRZ0 Fis family transcriptional regulator n=1 Tax=Des... 549 e-154 UniRef50_C8X2X5 PAS modulated sigma54 specific transcriptional r... 547 e-154 UniRef50_A3YA14 Sigma-54 dependent transcriptional regulator n=1... 540 e-152 UniRef50_Q48G07 Transcriptional regulator PhhR n=28 Tax=cellular... 534 e-150 UniRef50_A3Y5W7 Transcriptional regulatory protein n=1 Tax=Marin... 531 e-149 UniRef50_Q2FA16 TyrR n=1 Tax=Vibrio sp. DAT722 RepID=Q2FA16_9VIBR 529 e-149 UniRef50_C9KM56 Sigma-54 dependent transcriptional regulator/sen... 528 e-148 UniRef50_B8DQH7 PAS modulated sigma54 specific transcriptional r... 524 e-147 UniRef50_Q484S1 Sigma-54 dependent transcriptional regulator n=1... 523 e-147 UniRef50_A5D1E1 Transcriptional regulator n=3 Tax=Bacteria RepID... 522 e-146 UniRef50_A5D2K0 Transcriptional regulator n=2 Tax=Clostridia Rep... 522 e-146 UniRef50_A4J593 Sigma54 specific transcriptional regulator, Fis ... 520 e-146 UniRef50_B8F9P3 PAS modulated sigma54 specific transcriptional r... 520 e-146 UniRef50_Q3ACP6 Sigma-54 dependent transcriptional regulator n=4... 518 e-145 UniRef50_C3AI49 Sigma54 specific transcriptional regulator, Fis ... 517 e-145 UniRef50_A1HRK7 Sigma54 specific transcriptional regulator, Fis ... 514 e-144 UniRef50_C0GRG2 PAS modulated sigma54 specific transcriptional r... 513 e-144 UniRef50_B8FXH0 PAS modulated sigma54 specific transcriptional r... 513 e-144 UniRef50_A1HPH1 Putative PAS/PAC sensor protein n=1 Tax=Thermosi... 511 e-143 UniRef50_A5D421 Transcriptional regulator n=1 Tax=Pelotomaculum ... 511 e-143 UniRef50_C9RXL1 GAF modulated sigma54 specific transcriptional r... 509 e-143 UniRef50_C8W252 PAS modulated sigma54 specific transcriptional r... 508 e-142 UniRef50_C0Z5U4 Probable transcriptional regulator n=1 Tax=Brevi... 508 e-142 UniRef50_A4J599 Sigma54 specific transcriptional regulator, Fis ... 508 e-142 UniRef50_Q897M6 Transcriptional regulatory protein n=1 Tax=Clost... 508 e-142 UniRef50_Q0SQI9 Phosphocarrier HPr/sensory box protein/sigma-54 ... 506 e-142 UniRef50_A5I3D4 Putative sigma-54 dependent transcriptional regu... 506 e-141 UniRef50_A1HNH8 Sigma54 specific transcriptional regulator, Fis ... 504 e-141 UniRef50_B0K647 Sigma54 specific transcriptional regulator, Fis ... 504 e-141 UniRef50_Q2RKJ6 Sigma54 specific transcriptional regulator with ... 504 e-141 UniRef50_B8FIT8 PAS modulated sigma54 specific transcriptional r... 504 e-141 UniRef50_B8FWA2 PAS modulated sigma54 specific transcriptional r... 503 e-141 UniRef50_Q1K388 Sigma54 specific transcriptional regulator, Fis ... 502 e-140 UniRef50_C6HY50 Sigma54 specific transcriptional regulator, Fis ... 501 e-140 UniRef50_Q3ACE2 Sigma-54 dependent transcriptional regulator n=1... 500 e-140 UniRef50_B2A2S4 PAS modulated sigma54 specific transcriptional r... 500 e-140 UniRef50_Q67SC0 Sigma-54-dependent transcriptional regulator n=2... 499 e-140 UniRef50_B0TAR7 Sigma-54-dependent transcriptional activator (Ni... 499 e-139 UniRef50_Q3A203 Two component signal transduction response regul... 498 e-139 UniRef50_A4IPF8 Transcriptional regulator n=6 Tax=Bacillales Rep... 498 e-139 UniRef50_B2A661 PAS modulated sigma54 specific transcriptional r... 497 e-139 UniRef50_UPI0001C424D6 transcriptional regulator n=1 Tax=Bacillu... 497 e-139 UniRef50_B2A1V9 PAS modulated sigma54 specific transcriptional r... 495 e-138 UniRef50_C0GH67 PAS modulated sigma54 specific transcriptional r... 494 e-138 UniRef50_Q5WKW0 Transcriptional regulator n=1 Tax=Bacillus claus... 493 e-138 UniRef50_A7GG75 Sensory box sigma-54 dependent transcriptional r... 493 e-138 UniRef50_A9VII1 PAS modulated sigma54 specific transcriptional r... 493 e-138 UniRef50_C8VXU8 Putative sigma54 specific transcriptional regula... 492 e-137 UniRef50_A1HRA8 Sigma54 specific transcriptional regulator, Fis ... 491 e-137 UniRef50_Q3ACI2 Sigma-54-dependent transcriptional regulator n=1... 491 e-137 UniRef50_C0QF87 Transcriptional regulator (PAS/PAC domain protei... 491 e-137 UniRef50_C1DNV1 Sigma54-dependent activator protein n=8 Tax=Gamm... 490 e-137 UniRef50_Q0AVM6 Transcriptional regulator containing PAS AAA-typ... 490 e-137 UniRef50_Q0AWA7 Acetoin operon expression regulatory protein n=1... 490 e-137 UniRef50_A6LVD4 Sigma54 specific transcriptional regulator, Fis ... 489 e-137 UniRef50_C7LR14 PAS modulated sigma54 specific transcriptional r... 488 e-136 UniRef50_A1HLP6 Sigma54 specific transcriptional regulator, Fis ... 488 e-136 UniRef50_A4J1E1 Transcriptional regulator n=1 Tax=Desulfotomacul... 488 e-136 UniRef50_A7GID7 Sigma-54 dependent transcriptional regulator n=1... 487 e-136 UniRef50_A6CKR1 Putative uncharacterized protein n=1 Tax=Bacillu... 487 e-136 UniRef50_Q81CD5 Sigma-54-dependent transcriptional activator n=3... 486 e-136 UniRef50_Q9KBP6 Transcriptional regulator (Sigma-L-dependent) n=... 486 e-136 UniRef50_A3ESE7 Sigma54 specific transcriptional regulator, Fis ... 486 e-136 UniRef50_A1VFM6 Sigma54 specific transcriptional regulator, Fis ... 486 e-136 UniRef50_B0K4W6 GAF modulated sigma54 specific transcriptional r... 485 e-135 UniRef50_Q5WE88 Transcriptional activator of the acetoin dehydro... 485 e-135 UniRef50_Q0SR73 Sigma-54 dependent transcriptional regulator n=1... 484 e-135 UniRef50_Q5WJF2 Transcriptional regulator n=2 Tax=Bacillus RepID... 484 e-135 UniRef50_C5ESD9 PAS modulated sigma54 specific transcriptional r... 484 e-135 UniRef50_B7HA57 Sensory box sigma-54 dependent DNA-binding respo... 484 e-135 UniRef50_A5D511 Transcriptional regulator n=1 Tax=Pelotomaculum ... 484 e-135 UniRef50_B2A8I7 Putative sigma54 specific transcriptional regula... 483 e-135 UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional... 483 e-135 UniRef50_A8MFU8 PAS modulated sigma54 specific transcriptional r... 483 e-134 UniRef50_UPI00016C5695 DNA-binding protein Fis / transcriptional... 482 e-134 UniRef50_C1PBV8 Putative sigma54 specific transcriptional regula... 482 e-134 UniRef50_A1HS80 Sigma54 specific transcriptional regulator, Fis ... 482 e-134 UniRef50_B8FXN8 Putative sigma54 specific transcriptional regula... 482 e-134 UniRef50_C5DAI7 PAS modulated sigma54 specific transcriptional r... 481 e-134 UniRef50_C9S255 Proprionate catabolism activator, Fis family n=2... 481 e-134 UniRef50_Q5WF71 Sigma-L-dependent transcriptional regulator n=2 ... 481 e-134 UniRef50_A8RIT6 Putative uncharacterized protein n=1 Tax=Clostri... 479 e-134 UniRef50_Q1JWW3 GAF modulated sigma54 specific transcriptional r... 479 e-134 UniRef50_A1HSG4 Putative PAS/PAC sensor protein n=1 Tax=Thermosi... 479 e-133 UniRef50_C0GEG9 PAS modulated sigma54 specific transcriptional r... 479 e-133 UniRef50_Q0AWW3 Sigma-L-dependent transcriptional regulator n=4 ... 479 e-133 UniRef50_B8FD14 PAS modulated sigma54 specific transcriptional r... 478 e-133 UniRef50_Q2RHS4 Sigma54 specific transcriptional regulator, Fis ... 478 e-133 UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional... 477 e-133 UniRef50_Q2LQP1 Transcrption factor sigma 54 type n=4 Tax=Deltap... 477 e-133 UniRef50_A8S4D9 Putative uncharacterized protein n=1 Tax=Clostri... 476 e-133 UniRef50_B3E653 PAS modulated sigma54 specific transcriptional r... 475 e-132 UniRef50_C0Z9N5 Probable transcriptional regulator n=1 Tax=Brevi... 475 e-132 UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3... 475 e-132 UniRef50_Q6AL05 Related to transcription activator Stc n=1 Tax=D... 474 e-132 UniRef50_B8FQM8 PAS modulated sigma54 specific transcriptional r... 474 e-132 UniRef50_B4DAQ1 Transcriptional regulator, NifA subfamily, Fis F... 473 e-132 UniRef50_B8FKE8 Sigma54 specific transcriptional regulator, Fis ... 473 e-132 UniRef50_B2A7X5 Putative sigma54 specific transcriptional regula... 472 e-131 UniRef50_Q67RR4 Sigma-54-dependent transcriptional regulator n=1... 472 e-131 UniRef50_B1KVR7 Sigma-54 dependent transcriptional regulator n=1... 471 e-131 UniRef50_A8ZTX6 PAS modulated sigma54 specific transcriptional r... 471 e-131 UniRef50_C0GD56 PAS modulated sigma54 specific transcriptional r... 471 e-131 UniRef50_A4J8D6 Putative PAS/PAC sensor protein n=1 Tax=Desulfot... 470 e-131 UniRef50_A5D2Z2 Transcriptional regulator n=1 Tax=Pelotomaculum ... 470 e-131 UniRef50_B7HB38 Sensory box sigma-54 dependent DNA-binding respo... 470 e-131 UniRef50_Q0AVD1 Putative uncharacterized protein n=1 Tax=Syntrop... 470 e-131 UniRef50_A6LV27 Sigma54 specific transcriptional regulator, Fis ... 470 e-131 UniRef50_A6LJ55 Sigma54 specific transcriptional regulator, Fis ... 470 e-131 UniRef50_A4IRU9 Sigma-54-dependent transcriptional activator n=3... 470 e-131 UniRef50_C8WQE7 PAS modulated sigma54 specific transcriptional r... 469 e-130 UniRef50_Q24N84 Putative uncharacterized protein n=1 Tax=Desulfi... 469 e-130 UniRef50_A6TVV8 Sigma54 specific transcriptional regulator, Fis ... 468 e-130 UniRef50_C4XT50 Fis family transcriptional regulator n=1 Tax=Des... 467 e-130 UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Cl... 467 e-130 UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulato... 467 e-130 UniRef50_D0MEW0 Transcriptional regulator, NifA subfamily, Fis F... 467 e-130 UniRef50_C6PY17 GAF modulated sigma54 specific transcriptional r... 466 e-130 UniRef50_C6BZ70 PAS modulated sigma54 specific transcriptional r... 466 e-130 UniRef50_B5WAL2 PAS modulated sigma54 specific transcriptional r... 466 e-130 UniRef50_C6PWR5 Putative sigma54 specific transcriptional regula... 466 e-129 UniRef50_A1HSK4 Sigma54 specific transcriptional regulator, Fis ... 466 e-129 UniRef50_A1VAP6 Sigma54 specific transcriptional regulator, Fis ... 465 e-129 UniRef50_C8QHJ7 Sigma54 specific transcriptional regulator, Fis ... 465 e-129 UniRef50_C1MAF5 Signal-transduction and transcriptional-control ... 465 e-129 UniRef50_A5GDL0 Sigma-54 specific transcriptional regulator, Fis... 465 e-129 UniRef50_Q24ZH2 Putative uncharacterized protein n=1 Tax=Desulfi... 465 e-129 UniRef50_B8G0V4 Sigma54 specific transcriptional regulator, Fis ... 465 e-129 UniRef50_D2LAE8 PAS modulated sigma54 specific transcriptional r... 464 e-129 UniRef50_Q5WL87 Transcriptional regulator n=1 Tax=Bacillus claus... 464 e-129 UniRef50_A6LV86 Sigma54 specific transcriptional regulator, Fis ... 464 e-129 UniRef50_Q1K2I9 Sigma54 specific transcriptional regulator, Fis ... 464 e-129 UniRef50_Q1JY50 Sigma54 specific transcriptional regulator, Fis ... 464 e-129 UniRef50_D1U6M0 PAS modulated sigma54 specific transcriptional r... 463 e-129 UniRef50_C5EM87 Sigma54 specific transcriptional regulator n=1 T... 463 e-129 UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=... 463 e-129 UniRef50_B3Q676 Transcriptional regulator, NifA subfamily, Fis F... 462 e-128 UniRef50_C8W392 Two component, sigma54 specific, transcriptional... 462 e-128 UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional... 462 e-128 UniRef50_B9XM81 Sigma54 specific transcriptional regulator with ... 462 e-128 UniRef50_C4XPI1 Fis family transcriptional regulator n=2 Tax=Des... 461 e-128 UniRef50_C0D6Q8 Putative uncharacterized protein n=1 Tax=Clostri... 461 e-128 UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC ... 461 e-128 UniRef50_Q02BY0 Sigma54 specific transcriptional regulator, Fis ... 461 e-128 UniRef50_Q183V3 Putative sigma-54 dependent regulatory protein n... 461 e-128 UniRef50_C7PQF6 Transcriptional regulator, NifA subfamily, Fis F... 461 e-128 UniRef50_A0N0V6 Putative regulatory protein n=2 Tax=Azoarcus ana... 460 e-128 UniRef50_Q2RH79 Sigma54 specific transcriptional regulator with ... 459 e-128 UniRef50_P12626 Nitrogen fixation protein anfA n=11 Tax=Bacteria... 459 e-128 UniRef50_C3ICC4 Sigma54 specific transcriptional regulator, Fis ... 459 e-127 UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional... 459 e-127 UniRef50_A4J616 Two component, sigma54 specific, transcriptional... 459 e-127 UniRef50_A9VKT7 PAS modulated sigma54 specific transcriptional r... 459 e-127 UniRef50_B7DTW4 GAF modulated sigma54 specific transcriptional r... 458 e-127 UniRef50_A8MEE7 Putative sigma54 specific transcriptional regula... 458 e-127 UniRef50_Q89W03 Transcriptional regulatory protein n=1 Tax=Brady... 457 e-127 UniRef50_A6EHB3 Sigma-54-dependent transcriptional regulator n=1... 457 e-127 UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional... 457 e-127 UniRef50_Q67RK7 Sigma-54-dependent transcriptional regulator n=1... 457 e-127 UniRef50_A0LFR7 Transcriptional regulator, NifA subfamily, Fis F... 457 e-127 UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional... 457 e-127 UniRef50_A0RFE6 Sensory box sigma-54 dependent DNA-binding respo... 457 e-127 UniRef50_Q2LXW8 Nif-specific regulatory protein with sigma 54 in... 456 e-127 UniRef50_A9HYL1 Propionate catabolism operon regulator n=3 Tax=B... 456 e-127 UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional... 456 e-127 UniRef50_Q2LUG8 Response regulator containing CheY-like receiver... 456 e-126 UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional... 456 e-126 UniRef50_B4D0Z8 Two component, sigma54 specific, transcriptional... 456 e-126 UniRef50_UPI0001972FEB sigma-54 factor, interaction region n=1 T... 455 e-126 UniRef50_A8S1K8 Putative uncharacterized protein n=1 Tax=Clostri... 455 e-126 UniRef50_Q5P3C3 Sigma-54 dependent DNA-binding response regulato... 455 e-126 UniRef50_C0Z7K7 Putative transcriptional regulator protein n=1 T... 455 e-126 UniRef50_Q2SEE5 Sigma 54-dependent transcriptional activator n=2... 455 e-126 UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator... 454 e-126 Sequences not found previously or not previously below threshold: UniRef50_P26047 Signal-transduction and transcriptional-control ... 499 e-140 UniRef50_C1P9P9 PAS modulated sigma54 specific transcriptional r... 497 e-139 UniRef50_A6TX18 Sigma54 specific transcriptional regulator, Fis ... 494 e-138 UniRef50_C4FI59 AAA family ATPase n=1 Tax=Sulfurihydrogenibium y... 491 e-137 UniRef50_C2W7W3 Transcriptional regulator n=4 Tax=Bacillus RepID... 487 e-136 UniRef50_A6LYP8 Sigma54 specific transcriptional regulator, Fis ... 486 e-135 UniRef50_C9S238 PAS modulated sigma54 specific transcriptional r... 485 e-135 UniRef50_A0LPB0 Sigma54 specific transcriptional regulator, Fis ... 485 e-135 UniRef50_C0GGJ4 Putative sigma54 specific transcriptional regula... 482 e-134 UniRef50_C8X1R7 PAS modulated sigma54 specific transcriptional r... 482 e-134 UniRef50_B9M8I7 PAS modulated sigma54 specific transcriptional r... 480 e-134 UniRef50_B0K2Z9 Sigma54 specific transcriptional regulator, Fis ... 479 e-133 UniRef50_B6FY43 Putative uncharacterized protein n=1 Tax=Clostri... 477 e-133 UniRef50_A6TL20 Sigma54 specific transcriptional regulator, Fis ... 477 e-133 UniRef50_Q8R5U6 NtrC family Transcriptional regulator, ATPase do... 476 e-133 UniRef50_C9XRJ3 Sigma-54-dependent transcriptional activator n=5... 476 e-133 UniRef50_A6TWZ7 Sigma54 specific transcriptional regulator, Fis ... 476 e-132 UniRef50_A1AME4 GAF modulated sigma54 specific transcriptional r... 474 e-132 UniRef50_Q30XH6 Putative transcriptional regulator, Fis family n... 474 e-132 UniRef50_P54529 Putative sigma L-dependent transcriptional regul... 473 e-132 UniRef50_C8WZA1 Sigma54 specific transcriptional regulator, Fis ... 473 e-132 UniRef50_A4J4R9 Sigma54 specific transcriptional regulator, Fis ... 472 e-131 UniRef50_A4J4M1 Sigma54 specific transcriptional regulator, Fis ... 471 e-131 UniRef50_C8X5E7 PAS modulated sigma54 specific transcriptional r... 471 e-131 UniRef50_A4J443 Two component, sigma54 specific, transcriptional... 470 e-131 UniRef50_Q9K633 Transcriptional regulator n=2 Tax=Bacillus RepID... 468 e-130 UniRef50_B8FTG8 PAS modulated sigma54 specific transcriptional r... 468 e-130 UniRef50_Q46802 Uncharacterized sigma-54-dependent transcription... 468 e-130 UniRef50_C0GJ16 GAF modulated sigma54 specific transcriptional r... 467 e-130 UniRef50_A4IPD5 Transcriptional regulator n=6 Tax=Geobacillus Re... 466 e-130 UniRef50_C0GEJ3 PAS modulated sigma54 specific transcriptional r... 466 e-129 UniRef50_B8D1H9 Putative PAS/PAC sensor protein n=1 Tax=Halother... 464 e-129 UniRef50_A6TL57 Sigma54 specific transcriptional regulator, Fis ... 464 e-129 UniRef50_C0QEM3 Sigma-54 dependent transcriptional regulator (PA... 464 e-129 UniRef50_B3E3G2 PAS modulated sigma54 specific transcriptional r... 463 e-129 UniRef50_Q17ZX8 Putative sigma-54 interacting protein n=8 Tax=Cl... 463 e-129 UniRef50_A6TJU2 Putative PAS/PAC sensor protein n=1 Tax=Alkaliph... 463 e-129 UniRef50_A8IQ96 Transcriptional regulator n=18 Tax=Proteobacteri... 463 e-129 UniRef50_Q3ACC6 Sigma-54 dependent transcriptional regulator n=1... 462 e-128 UniRef50_Q0AVA7 Transcriptional regulator containing PAS AAA-typ... 462 e-128 UniRef50_C0ZHT6 Probable transcriptional regulator n=1 Tax=Brevi... 461 e-128 UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional... 461 e-128 UniRef50_A6SWE4 Sigma-54-dependent transcriptional activator n=4... 460 e-128 UniRef50_Q3A356 Two component, sigma54 specific, transcriptional... 459 e-127 UniRef50_Q2LRH6 Transcriptional regulator with sigma 54 interact... 459 e-127 UniRef50_B8FIH6 PAS modulated sigma54 specific transcriptional r... 458 e-127 UniRef50_Q8EN58 Transcriptional regulator n=1 Tax=Oceanobacillus... 458 e-127 UniRef50_B8FQQ1 Sigma54 specific transcriptional regulator, Fis ... 458 e-127 UniRef50_A4IJQ7 Sigma-54-dependent transcriptional activator n=5... 458 e-127 UniRef50_Q1Q6P9 Similar to Sigma-54 dependent transcriptional re... 457 e-127 UniRef50_B8DQ12 PAS modulated sigma54 specific transcriptional r... 457 e-127 UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulato... 457 e-127 UniRef50_A5CY60 Transcriptional activator of acetoin/glycerol me... 456 e-127 UniRef50_C5JBC1 Sensory box protein/sigma-54 dependent DNA-bindi... 456 e-127 UniRef50_Q8EMV1 Transcriptional regulator n=2 Tax=Bacillaceae Re... 456 e-126 UniRef50_B8FM80 PAS modulated sigma54 specific transcriptional r... 456 e-126 UniRef50_B8FV05 Sigma54 specific transcriptional regulator, Fis ... 456 e-126 UniRef50_B8FUC3 PAS modulated sigma54 specific transcriptional r... 455 e-126 UniRef50_B1YLR1 PAS modulated sigma54 specific transcriptional r... 455 e-126 UniRef50_Q39TT6 Transcriptional regulator, Fis family / DNA-bind... 454 e-126 UniRef50_C6PP25 Proprionate catabolism activator, Fis family n=1... 454 e-126 UniRef50_UPI0001C34ECA sigma-54 dependent transcriptional regula... 454 e-126 >UniRef50_Q9ZIB7 Transcriptional regulatory protein tyrR n=263 Tax=Gammaproteobacteria RepID=TYRR_ENTAG Length = 521 Score = 658 bits (1698), Expect = 0.0, Method: Composition-based stats. Identities = 375/520 (72%), Positives = 435/520 (83%), Gaps = 9/520 (1%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRR 60 MRLEVFC+DR+GL RELLDLLV R IDLRGIE+ GRIYLNF+ LEFE FS+LMAEIRR Sbjct: 1 MRLEVFCQDRIGLARELLDLLVARSIDLRGIEVAASGRIYLNFSTLEFEQFSNLMAEIRR 60 Query: 61 IAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRL 120 GVTDVRTVP+MPSEREH LSALL A+PEPV SVD+++KV++ANPA+ LF +++ Sbjct: 61 TPGVTDVRTVPYMPSEREHRVLSALLVAMPEPVFSVDLRTKVELANPAAQNLFNLDENKI 120 Query: 121 RNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQH-VLTGAV 179 RN TA LINGFNF RWLESE + +HVVI G++FLME P+YL ++NDQ L GA+ Sbjct: 121 RNFTADHLINGFNFARWLESERVQAQAQHVVIEGRDFLMEAHPIYLSEDNDQADQLVGAM 180 Query: 180 VMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTG 239 VML+ST RMGRQLQN+ D + F IVAV+P+M+ VVEQA+KLAM APLLI GDTGTG Sbjct: 181 VMLKSTARMGRQLQNLVVTDETEFDHIVAVTPRMRQVVEQARKLAMHDAPLLIIGDTGTG 240 Query: 240 KDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAP-------EGKKGFFEQANG 292 KD+ A ACH S R P+LALNCAS+P+D ESELFGHA EGKKGFFEQANG Sbjct: 241 KDMLARACHLRSARGKMPFLALNCASLPDDVAESELFGHAAGAYPNALEGKKGFFEQANG 300 Query: 293 GSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMF 352 GSVLLDEIGEMSP MQ KLLRFLNDGTFRRVGE+HEVHV+VRVICATQKNL ELVQ+G F Sbjct: 301 GSVLLDEIGEMSPTMQTKLLRFLNDGTFRRVGEEHEVHVNVRVICATQKNLFELVQRGEF 360 Query: 353 REDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAW 412 REDL+YRLNVLTLNLPPLR+ QDIMPLTE+FVARFADEQG+PRP+L++ LN L RY W Sbjct: 361 REDLFYRLNVLTLNLPPLRERVQDIMPLTEIFVARFADEQGIPRPRLSSQLNAFLMRYNW 420 Query: 413 PGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSV 472 PGNVRQLKNA+YRALTQL+G+ELRPQDI+LP+ A V++GE+AMEG+LD+ITSRFERS+ Sbjct: 421 PGNVRQLKNALYRALTQLEGHELRPQDIVLPE-QALDVSLGEEAMEGTLDQITSRFERSI 479 Query: 473 LTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKKNE 512 LT+LY +YPSTRKLAKRLGVSHTAIANKLREYGL QK+ + Sbjct: 480 LTRLYLSYPSTRKLAKRLGVSHTAIANKLREYGLGQKRGD 519 >UniRef50_B4RUH9 Transcriptional regulatory protein tyrR n=6 Tax=Gammaproteobacteria RepID=B4RUH9_ALTMD Length = 518 Score = 655 bits (1690), Expect = 0.0, Method: Composition-based stats. Identities = 244/514 (47%), Positives = 349/514 (67%), Gaps = 7/514 (1%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRR 60 MRLE+ C+DRLG+T+++LD+LV + IDLRGIEIDP G+I+LNF +EF F LM +IRR Sbjct: 1 MRLEISCQDRLGITQDVLDILVTKEIDLRGIEIDPAGKIFLNFPNIEFADFQHLMPQIRR 60 Query: 61 IAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRL 120 I G+ DV+T +MP ERE LSA+L LP+PV S+D K + + N A + Sbjct: 61 IDGIDDVKTTLFMPGEREKNQLSAILRTLPDPVFSIDAKGNIVLCNEAVSAGLEMPTSDI 120 Query: 121 RNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVV 180 ++++ GFNF +W++ + + V Q++L ++ P+ + D + ++ GAVV Sbjct: 121 EGTEISEVVKGFNFTKWMDGKSPGPQSSKVKFIQQDYLADMLPITVPDGDKNMIMAGAVV 180 Query: 181 MLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGK 240 +L+S +R+G+Q +F + +A SP MK VV +A+++A L AP+LI G+TGTGK Sbjct: 181 ILKSEMRLGQQFTAFHQSPTDSFDRFIAQSPFMKRVVHEAKRIADLDAPILIFGETGTGK 240 Query: 241 DLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE------GKKGFFEQANGGS 294 ++ A ACHQ+S R+ +LALNCAS+P+ E+ELFG+A K G EQA GG+ Sbjct: 241 EMIARACHQSSRRSEGAFLALNCASLPDSVAETELFGYAAGAFNQPNAKVGLLEQAKGGT 300 Query: 295 VLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFRE 354 +LLDEI +MS ++QAKLLR L DG FRRVG+ V VDVR IC T ++L +LV++G FR+ Sbjct: 301 LLLDEIADMSSQLQAKLLRVLEDGEFRRVGDAEPVKVDVRFICTTCRDLGQLVEEGRFRK 360 Query: 355 DLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPG 414 +LYYRLNVL+L +P L+D QDI+PL E F+ + + + G KL+ L +Y WPG Sbjct: 361 ELYYRLNVLSLVMPSLKDRRQDIVPLAESFIVQHSTKLGRRPAKLSKSCVDFLQQYPWPG 420 Query: 415 NVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLT 474 NVRQL+NA+YRAL+ LDG E+ +DI LP A +V ++ EG+LDE +FE+ +L Sbjct: 421 NVRQLQNALYRALSLLDGKEITKEDIQLPSC-APSVTYIDENFEGTLDEEVKKFEKDLLK 479 Query: 475 QLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQ 508 +LY +YPSTR+LAK+LG+SHTAIANKLREYG+++ Sbjct: 480 RLYPSYPSTRQLAKKLGLSHTAIANKLREYGINK 513 >UniRef50_Q15RI2 Transcriptional regulator, TyrR n=12 Tax=Bacteria RepID=Q15RI2_PSEA6 Length = 518 Score = 649 bits (1674), Expect = 0.0, Method: Composition-based stats. Identities = 257/515 (49%), Positives = 351/515 (68%), Gaps = 7/515 (1%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRR 60 MRLE+ C+DRLG+T+++LD+LV +DLRGIEI+ +G+IYL+F ++FE F LM +IR+ Sbjct: 1 MRLEISCQDRLGITQDVLDILVSHEVDLRGIEINEMGKIYLSFPNMDFEHFQHLMPKIRK 60 Query: 61 IAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRL 120 IAG+ DV+T+P+MP ERE L ALL+ LP+PV SVD K ++ + N A + + L Sbjct: 61 IAGIDDVKTIPFMPLEREQNQLRALLQTLPDPVFSVDTKGRILLINDAVTASLETEREAL 120 Query: 121 RNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVV 180 +L+ GFN LRWLES+ S + V QN+L +I PV + D +L GAV Sbjct: 121 IGVDIDELVKGFNTLRWLESKKIASLTQKVRFIEQNYLADILPVMVPDSGGDPILAGAVF 180 Query: 181 MLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGK 240 ML+S R+G+QL + +F I A S MK VV +A+++A L P+++ G+TGTGK Sbjct: 181 MLKSEQRLGQQLTVFHEASLDSFMSIQASSKVMKKVVREAKRMAELDGPIILYGETGTGK 240 Query: 241 DLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE------GKKGFFEQANGGS 294 +L A+ACH+AS R +L LNCAS+P++ E+ELFG+A GK+G E A GGS Sbjct: 241 ELIAHACHEASRRKDASFLVLNCASLPDNVAETELFGYAAGAFGQSTGKEGLLELAQGGS 300 Query: 295 VLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFRE 354 + LDE+G+MSP++QAKLLR L DG FRRVG+ EV VDVR IC TQK+L +LVQ+G FRE Sbjct: 301 LFLDEVGDMSPQLQAKLLRVLQDGKFRRVGDTKEVKVDVRFICTTQKDLAQLVQEGRFRE 360 Query: 355 DLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPG 414 DLYYRLNVL+L +PPLR+ DI+PL E F+ + + G PKL + Y W G Sbjct: 361 DLYYRLNVLSLGIPPLRERKMDIIPLAETFLKQHSLTLGRKVPKLTKSCVDYIQAYPWFG 420 Query: 415 NVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLT 474 NVRQL+N +YRA++ L+G EL + I +P A V ED +GSLDE RFE+S+L Sbjct: 421 NVRQLENVLYRAVSLLEGNELGKEHIQIPSSANAMSFVTED-FDGSLDEEVKRFEKSILQ 479 Query: 475 QLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQK 509 +LY +YPS+R LAK+LG+SHTAIANKLR+YG+++K Sbjct: 480 RLYPSYPSSRLLAKKLGLSHTAIANKLRDYGINKK 514 >UniRef50_UPI0000E0E363 sigma-54 dependent transcriptional regulator TyrR n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0E363 Length = 518 Score = 618 bits (1595), Expect = e-175, Method: Composition-based stats. Identities = 233/514 (45%), Positives = 338/514 (65%), Gaps = 7/514 (1%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRR 60 MRLE+ C+DRLG+ +++L+LL IDLRGIEI+ G+IYL+F +EF F M +IRR Sbjct: 1 MRLEISCQDRLGIAQDVLELLKAHEIDLRGIEINEAGKIYLSFPTIEFTDFQQFMPKIRR 60 Query: 61 IAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRL 120 I G+ DV+T +MP ERE L A+++ +P+PV S+D K ++ + N A+ ++ L Sbjct: 61 IEGIDDVKTTLFMPIERERNELKAIIQTMPDPVFSIDTKGRIVLFNDAAKFSVDNDINAL 120 Query: 121 RNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVV 180 + + GF F +WLES+ + + V Q+++ +I P+ + D +D+ +L GAVV Sbjct: 121 IKADIEEWVEGFKFEKWLESKETFAQTQKVKFVEQDYIADILPITVADNDDEEILAGAVV 180 Query: 181 MLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGK 240 +L+S +R+G+Q ++ +F + AVSP M VV +A ++A L P+LI G+TGTGK Sbjct: 181 ILKSELRLGQQFNTFHQKETDSFDKFHAVSPAMCKVVNEASRMADLDGPILIFGETGTGK 240 Query: 241 DLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPEG------KKGFFEQANGGS 294 +L A ACH+AS R P L LNC + +D +E+ELFG + G +A GG+ Sbjct: 241 ELIARACHEASSREEAPLLMLNCTANTDDIIETELFGTIEGSFGTQILRDGLLVKAQGGT 300 Query: 295 VLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFRE 354 +LLDEI +MS +Q+KLLR + DG FRR G++ + VDVR+IC T K+L LV+ G FR+ Sbjct: 301 LLLDEIADMSAYLQSKLLRVIEDGEFRRSGDEAPIPVDVRIICTTSKDLGLLVESGRFRQ 360 Query: 355 DLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPG 414 DLYYRLNVL+L +P LR+ QDI+PLTE F+ + G KL+ L Y WPG Sbjct: 361 DLYYRLNVLSLVMPALRERKQDIIPLTESFIKEHCIKLGRNVAKLSKSCVDYLNTYPWPG 420 Query: 415 NVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLT 474 NVRQL+NA+YRALT L+G E+ + I LP A TV+ ++ EG+LDE +FE+ +L Sbjct: 421 NVRQLQNALYRALTLLEGNEITKEHIHLPSC-ATTVSYIDENFEGTLDEEVKKFEKDLLR 479 Query: 475 QLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQ 508 +LY +YPSTR+LA++LG+SHTAIANKLREYG+++ Sbjct: 480 KLYPSYPSTRQLARKLGLSHTAIANKLREYGINK 513 >UniRef50_Q3AAC4 Sigma-54 dependent transcriptional regulator n=2 Tax=Clostridia RepID=Q3AAC4_CARHZ Length = 516 Score = 613 bits (1581), Expect = e-174, Method: Composition-based stats. Identities = 169/521 (32%), Positives = 300/521 (57%), Gaps = 23/521 (4%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRR 60 ++L + EDR+GL ++ ++ R +++ ++ P GR++L + + ++ ++ +++ Sbjct: 4 IKLSLDFEDRVGLVLDVSRVISARNLNIITFQVLP-GRMFLEIEKTDKKTLKQIIDDLKN 62 Query: 61 IAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRL 120 I V V + MP E++ L A+L+ + E ++++D + + N + ++FG ++R+ Sbjct: 63 IPKVLKVHPIEIMPYEQKEQQLRAVLDTVNEGIIAIDSHGTISICNQSCAEIFGIPVERV 122 Query: 121 RNHTAAQLING-FNFLRWLESEPQDSHNEHVV-INGQ--NFLMEITPVYLQDENDQHVLT 176 +L+ L+ L++ ++ E ++ + G+ ++L P+ + N + Sbjct: 123 IGQNVGKLLANDIPMLKTLKTGESYNNQEIIINVEGRRLHYLTSGRPIKDRLGN----IV 178 Query: 177 GAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDT 236 G V +L+ + + + +++F+ I+ S KM+ VVE A+K+A +LI G++ Sbjct: 179 GVVAVLKPMSEVRELVYALTKPSLNSFNDIIYTSEKMRFVVEMAKKVARTDTTVLIRGES 238 Query: 237 GTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH--------APEGKKGFFE 288 GTGK+LFA A H SPR KP++ LNCA++PE +ESELFG+ GK+G E Sbjct: 239 GTGKELFARAIHLESPRRTKPFVPLNCAAVPESLLESELFGYVEGAFTGAKKGGKQGLLE 298 Query: 289 QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQ 348 A+ G++ LDEI E+ +QAKLLR L +G RR+G E+ VD+R+I AT +NL +V+ Sbjct: 299 FAHEGTLFLDEIAELPTHLQAKLLRVLQEGKVRRIGGQEEIPVDIRIIAATNRNLEGMVR 358 Query: 349 KGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLT 408 +G FREDLY+RLNV L +PPLR+ +DI LT F+ FA +G+ ++ + L Sbjct: 359 EGKFREDLYFRLNVFPLQIPPLRERVEDIEVLTYHFLNTFAKRRGIQYFEITENALNKLK 418 Query: 409 RYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRF 468 Y+WPGNVR+L+N I RALT D + +DI+L + + +L+E ++ Sbjct: 419 AYSWPGNVRELQNVIERALTLADDGVIEAKDIILDNPQNTYF------VARTLEEAVNQV 472 Query: 469 ERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQK 509 E+ ++ + + YPS R+ A+ LGV+HT + NK+++ L+ K Sbjct: 473 EKELIERALKQYPSIRQAARSLGVTHTTLRNKIKKLKLTNK 513 >UniRef50_Q12L04 Transcriptional regulator, TyrR n=3 Tax=Shewanella RepID=Q12L04_SHEDO Length = 512 Score = 607 bits (1565), Expect = e-172, Method: Composition-based stats. Identities = 244/514 (47%), Positives = 338/514 (65%), Gaps = 6/514 (1%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRR 60 MRLEV C DR+GL +++L +L GI+L I+ G +YL FAE+ FE+ LM IR+ Sbjct: 1 MRLEVSCIDRVGLAKDILVILERYGINLIAIDASNRGFLYLQFAEISFETLRELMPLIRK 60 Query: 61 IAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRL 120 + V DVRTV +MPSE+EH AL LL+ LP+ V S++ K ++ + N ++ + Sbjct: 61 VESVHDVRTVSFMPSEQEHYALKTLLQTLPDSVFSINAKGRIRIVNESALLTLSMAEHEV 120 Query: 121 RNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVV 180 + + + GFNF RWL + V I +L E+ P+YL DEND +L GAVV Sbjct: 121 LDESLNHWVQGFNFGRWLSEPQVLAQATRVTIGTNEYLAEMLPIYLPDENDSQILAGAVV 180 Query: 181 MLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGK 240 L+S R+G+Q N + F ++A+S KMK V++QA+++A L APLLITG+TGTGK Sbjct: 181 SLKSPARVGKQF-NALQNQTTGFESVLAMSDKMKDVLKQARRMAQLDAPLLITGETGTGK 239 Query: 241 DLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPEG---KKGFFEQANGGSVLL 297 +L A A H AS R KP++A+NCA++P+ A E ELFG +G K+G FE+A+GG+V L Sbjct: 240 ELMARASHDASMRREKPFIAINCAALPDSAAEEELFGFVNQGTVVKRGLFEEASGGTVYL 299 Query: 298 DEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLY 357 DEI EMS Q KLLRFL DG FRR+G D EV DVR+IC+TQKNL EL Q FREDLY Sbjct: 300 DEIAEMSKTAQVKLLRFLQDGCFRRIGGDEEVRADVRIICSTQKNLAELCQTDEFREDLY 359 Query: 358 YRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVR 417 YR++VL+ ++P LR+ D++PLTE+F+ ++ + P +++A L YAWPGNVR Sbjct: 360 YRIHVLSYHMPALRERKVDVIPLTEMFLEHYSQQLSSPLRRISASCRDYLFSYAWPGNVR 419 Query: 418 QLKNAIYRALTQLDG-YELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQL 476 QLKNA++RA++ DG EL + + LP Y A ++ EGSLD+ +E +L +L Sbjct: 420 QLKNAVFRAVSMWDGATELTVEQLKLPSY-AEGFGYFDEEFEGSLDDAMKEYEAGLLRRL 478 Query: 477 YRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKK 510 Y YPSTR+LAK+LGVSHTAIANKLR+Y + +K+ Sbjct: 479 YPAYPSTRQLAKKLGVSHTAIANKLRDYQIVKKR 512 >UniRef50_A6FE33 Sigma-54 dependent transcriptional regulator TyrR n=1 Tax=Moritella sp. PE36 RepID=A6FE33_9GAMM Length = 522 Score = 595 bits (1534), Expect = e-168, Method: Composition-based stats. Identities = 237/524 (45%), Positives = 338/524 (64%), Gaps = 17/524 (3%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRR 60 MRLE+ CEDR+G++RE+LD + R I+L IEI RI++ LEF +LMA +RR Sbjct: 1 MRLELVCEDRVGISREILDCFLARDINLSAIEIQQPDRIFIKSPNLEFSDLQALMANLRR 60 Query: 61 IAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRL 120 I+GV DV+TV ++PSE EH + L+ LP+ V SVD+K V + N + G ++ Sbjct: 61 ISGVCDVKTVSYLPSELEHQEIQTLMTNLPDIVFSVDVKGLVSLVNTPALTALGLLESQV 120 Query: 121 RNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQ-------- 172 + H + + GF+ +WLESE + + + + ++F +I P+ + + +Q Sbjct: 121 KGHCISNFVKGFSITKWLESEEVCAQTQKLTLLDEDFFGDILPLSISSDVNQVTLSKAAV 180 Query: 173 ----HVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSA 228 H L GAV++L+S R+G+Q + +AF +I A S KM ++ A+K A+L A Sbjct: 181 SVKPHELVGAVIILKSVDRIGKQFNFLRTFQFAAFDEIFAKSDKMNKLINTAKKFAILDA 240 Query: 229 PLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPEG---KKG 285 PL+I G+TG GK+L A ACHQAS R+ +LALNCA++P+ ESELFG + K+G Sbjct: 241 PLMILGETGAGKELIAKACHQASGRSQHQFLALNCAAVPDAVAESELFGVVTDDGETKRG 300 Query: 286 FFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVE 345 FE AN GSVLLDEIG+MSP +Q K LR L G FRRVG++ EV VDVR+IC TQ +L + Sbjct: 301 IFELANEGSVLLDEIGDMSPYLQTKFLRLLETGCFRRVGDEQEVRVDVRIICTTQNDLAK 360 Query: 346 LVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNT 405 L+ +G FR+DLYYRLNVL++ +P LR+ +DI+PL F + F+ E +P+L+ ++ Sbjct: 361 LISEGKFRQDLYYRLNVLSMTVPALRERKEDIIPLCHSFCSVFSHELQRTKPQLSRNVLE 420 Query: 406 VLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEIT 465 +L Y WPGNVR+L+N +Y AL+ L+G L P D+ L T E +GSLDE Sbjct: 421 LLQSYPWPGNVRELRNVLYHALSLLEGDVLNPCDLNL--SATTTETYDEALFDGSLDEAC 478 Query: 466 SRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQK 509 RFE+ +L +LY +YPSTR+LAKRLGVSHTAIANKLR+Y +++K Sbjct: 479 KRFEKLLLQRLYPSYPSTRQLAKRLGVSHTAIANKLRDYKITKK 522 >UniRef50_A1HQW3 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HQW3_9FIRM Length = 522 Score = 584 bits (1506), Expect = e-165, Method: Composition-based stats. Identities = 156/516 (30%), Positives = 266/516 (51%), Gaps = 10/516 (1%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRR 60 MR+ + DR+ +T ++L + +++ +E+ IY+ F ++ ++ + AEI Sbjct: 7 MRIGIKTIDRVNMTFDILKVFAKYEVNIIWMEVYT-HIIYIKFDRVDAATWGKMHAEILA 65 Query: 61 IAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRL 120 ++GV ++ + + E + +L+A + + +D + + N + Q+ Q L Sbjct: 66 VSGVQELTEIDLIAFEEREQLIETILDASSDGFIVIDKDGTIKLTNSRAIQILRQAG-NL 124 Query: 121 RNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVV 180 + ++ + ++ S+ + N + +N+ V+ G ++ Sbjct: 125 EGKSIYTILPAPDIIKKALSKGIEISNHTLFYEHGGGTCHCLVSSRTLKNEAGVIQGLIL 184 Query: 181 MLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGK 240 LR + + ++ F+ IV SP M VV A+ +A ++ +LI G++GTGK Sbjct: 185 TLRDMHDVREMVYSITQARQITFNDIVTKSPSMLSVVALARNIAKNNSTVLIRGESGTGK 244 Query: 241 DLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPEG--------KKGFFEQANG 292 +LFA A H A R KP++ LNCA+IP+ +ESELFG+ K+G FE A+G Sbjct: 245 ELFARAIHAAGKRHNKPFIPLNCAAIPDTLIESELFGYEDGTFTGGKKGGKQGLFELAHG 304 Query: 293 GSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMF 352 G++ LDE+ E+S +QAKLLR L +G RRVG E+ VDVR+I AT +NL +++ G F Sbjct: 305 GTLFLDEVAELSAYVQAKLLRVLQEGMVRRVGGHKEIAVDVRIIAATNRNLEAMLKNGQF 364 Query: 353 REDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAW 412 REDL+YRLNV+ L +PPLR+ +DI L + F+ + G P ++ + RY W Sbjct: 365 REDLFYRLNVIPLYIPPLREHIEDIPLLIDHFIKVLGGKLGKPDIVVSPRAVEKMLRYPW 424 Query: 413 PGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSV 472 PGNVR+L N + RA+ DG + I+ A + L E ER + Sbjct: 425 PGNVRELSNVVERAIYLCDGRVITEDHIVFAQAAVDQPAAAVNDAIPLLREAVEATERKL 484 Query: 473 LTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQ 508 + + R Y S R+ AK LGV+HT + N++++ + + Sbjct: 485 IAEAIRRYGSLRQAAKALGVTHTLLINRMKKLNIHK 520 >UniRef50_B1JB99 Sigma-54 factor interaction domain-containing protein n=22 Tax=Pseudomonadaceae RepID=B1JB99_PSEPW Length = 531 Score = 581 bits (1498), Expect = e-164, Method: Composition-based stats. Identities = 214/518 (41%), Positives = 299/518 (57%), Gaps = 24/518 (4%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRR 60 MR+ V DR+G+T+E+L LL R ++L +E+ P +Y++ L L + Sbjct: 29 MRIHVSFIDRVGITQEVLALLGARNLNLDAVEMVPPN-VYIDAPTLSPAVLEELHDALFE 87 Query: 61 IAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRL 120 + GV V V +P +R HL L ALL A+ +PVL+VD V +ANPA L G++ Sbjct: 88 VHGVQSVDVVDILPGQRRHLQLDALLAAMSDPVLAVDSAGLVLLANPALIALCGRES--- 144 Query: 121 RNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVV 180 + +L L+ L + +NGQ+ L++ TP+ G ++ Sbjct: 145 AGRSVGELFGDPGLLQALLDNNFHLPMREMQLNGQSLLLDATPITN---------AGGLL 195 Query: 181 MLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGK 240 L RMG +L + F ++ SP ++ + +A ++A L APLL+ G+TGTGK Sbjct: 196 TLYPPNRMGERLSALHHDHAEGFDALLGESPAIRTLKARALRVAALDAPLLVHGETGTGK 255 Query: 241 DLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGFFEQANG 292 +L A ACH S R P+LALNCA++PE ESELFG+AP GK G E AN Sbjct: 256 ELVARACHAISSRQAAPFLALNCAALPESLAESELFGYAPGAFTGAQRGGKPGLMELANQ 315 Query: 293 GSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMF 352 G+V LDEIGEMSP +QAKLLRFL+DG+FRRVG D EV VDVR+I AT ++L +V +G F Sbjct: 316 GTVFLDEIGEMSPYLQAKLLRFLSDGSFRRVGGDREVKVDVRIISATHRDLERMVAEGTF 375 Query: 353 REDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAW 412 REDL+YRLNVL L +PPLRD QDI+ L F+ + + P +L ++ L W Sbjct: 376 REDLFYRLNVLNLQVPPLRDRGQDILMLAHYFMQQACTQIQRPACRLTPATHSALLANPW 435 Query: 413 PGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSV 472 PGNVRQL+N I+RA + + D+ D +VA G+D SL++ FER + Sbjct: 436 PGNVRQLQNVIFRAAAICESNLVDIGDL---DIAGTSVARGQDGEVASLEQAVGDFEREL 492 Query: 473 LTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKK 510 L +LY +YPSTR+LA RL SHTAIA +LR+YG+ + K Sbjct: 493 LQRLYASYPSTRQLAGRLQTSHTAIAQRLRKYGIPKAK 530 >UniRef50_B2A3R3 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A3R3_NATTJ Length = 541 Score = 577 bits (1489), Expect = e-163, Method: Composition-based stats. Identities = 170/542 (31%), Positives = 283/542 (52%), Gaps = 45/542 (8%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFES--FSSLMAEI 58 R +V DR+G+ ++L ++ L+ I++ +E+ P L + +L+F +L + + Sbjct: 4 FRYQVQTVDRVGMVLDVLRVVYLKNINITAMEVAPQ----LIYLKLDFAPAMKGALESAV 59 Query: 59 RRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLD 118 + I GV + + +P E + L +L+ + E ++++D + M NP++ ++ + Sbjct: 60 KEIPGVRGIDEISLLPQEEKEQKLRGILDTIGEGIIALDKSGIITMINPSAEKILNLS-E 118 Query: 119 RLRNHTAAQLIN-GFNFLRWLESEP-QDSHNEHVVING--QNFLMEITPVYLQDENDQHV 174 + +++ L+ L + D+ V + G ++L P+ +ND Sbjct: 119 NIEGRDIRDILSAELPILKTLSAGEDYDNKEIFVTLPGGKSHYLTSGRPI----KNDDGN 174 Query: 175 LTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITG 234 GAV ++ + + + + + +F I+A S M + A+K+A + +L+TG Sbjct: 175 TVGAVAAIKDINEVRKLVHRITHPTMLSFDDIIAESSIMNETISFAKKIAHGDSTVLLTG 234 Query: 235 DTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGF 286 ++GTGK+LFA A H SPR P++ LNCA+IPE +ESELFG+ GK G Sbjct: 235 ESGTGKELFARAIHMESPRKDCPFVPLNCAAIPETLMESELFGYEEGAFTGAKKGGKHGL 294 Query: 287 FEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVEL 346 FE AN G+V LDEIG ++P++Q KLLR L + RR+G E+ VD+RVI AT NL +L Sbjct: 295 FELANKGTVFLDEIGNLNPQLQVKLLRVLQEREVRRIGGKEEISVDIRVITATNHNLEKL 354 Query: 347 VQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTV 406 V +G FREDLYYRLNV+ + LPPLR+ +DI+PL + + G +L+ + Sbjct: 355 VNEGYFREDLYYRLNVIPIKLPPLRNRKEDIIPLANHILGQMRTNHGGQY-QLSPKSREL 413 Query: 407 LTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGE------------ 454 L Y+WPGNVR+L+N I RA+ + + + + D + GE Sbjct: 414 LKTYSWPGNVRELENIIERAVNLANDNIIEGEHLFFGQEDGFSNYEGEMENWEQNQQYQN 473 Query: 455 ---------DAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYG 505 + + +I E+ +L ++ + S RK AK+LGVSHT I NK+++YG Sbjct: 474 GQSEAEISVNYKDKDFSQILQSVEKQILQKVLSEHASARKAAKQLGVSHTTILNKIKKYG 533 Query: 506 LS 507 L Sbjct: 534 LQ 535 >UniRef50_A0Q207 Transcriptional regulator n=3 Tax=Clostridium RepID=A0Q207_CLONN Length = 520 Score = 576 bits (1485), Expect = e-163, Method: Composition-based stats. Identities = 152/515 (29%), Positives = 279/515 (54%), Gaps = 11/515 (2%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRR 60 +R ++ EDR+G+T ++L + I++ IE+ P +++ ++ + + ++ Sbjct: 5 IRFKIVTEDRIGITFDILKKIYDLNINIVSIEVFPK-TVFIKIEDIYSHNKDLIKKKLYE 63 Query: 61 IAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRL 120 ++G+ V + + E+ L A+++A+ + V+ V+ +++ N ++F D + Sbjct: 64 VSGIIMVCEINLLEYEKNERKLLAIIDAVDDGVIYVNKNLNIEIFNSYCEKIFNCNKDDI 123 Query: 121 RNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVV 180 + ++ + ++S +D N + IN + ++ + ++D G V Sbjct: 124 IDKDIRTVLEDPLIIDLIKSG-KDYKNVEIKINSKKGDIQYLTTGIAVKDDSGESIGVVS 182 Query: 181 MLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGK 240 + ++ V+ D AF I+ S +K V + ++ ++ +++ G++GTGK Sbjct: 183 SITDIKKVIELASVVSKMDKEAFGNIIGNSQAIKGVKNIVKTVSKSNSTVILRGESGTGK 242 Query: 241 DLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGFFEQANG 292 +LFA A + S R K ++ LNCA++PE+ +ESELFG+ GK+G F++AN Sbjct: 243 ELFARAIQRLSNRKDKRFVILNCAALPENLIESELFGYVKGSFTGANNNGKEGLFKEANE 302 Query: 293 GSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMF 352 G++ LDEIGE+S +QAKLLR L DG R++G E VDVR+I AT +NL E+V+KG F Sbjct: 303 GTIFLDEIGELSMVLQAKLLRVLQDGVVRKIGSCTEEKVDVRIIAATNRNLEEMVKKGEF 362 Query: 353 REDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAW 412 REDLYYRLNV+ + +P LR+ +DI + F+ + + + D L +Y W Sbjct: 363 REDLYYRLNVIPIFIPSLRERMEDIPDMVTFFIKKLNHKLSKKILGVKYDFIKELMKYNW 422 Query: 413 PGNVRQLKNAIYRALTQLDGYELRPQDILLPDY-DAATVAVGEDAMEGSLDEITSRFERS 471 PGN+R+L+N + RA+ DG L + +++ Y + ++ ++A + L +I E+ Sbjct: 423 PGNIRELQNVVERAMNLCDGKLLTKKHLMINSYINPISLDEVKEASDLKLKDIVEACEKE 482 Query: 472 VLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 + + + + RK AK LGVSHT I NK+++Y + Sbjct: 483 AIIKALKKNKTFRKTAKVLGVSHTTIINKIKKYNI 517 >UniRef50_B8G264 Putative sigma54 specific transcriptional regulator n=2 Tax=Desulfitobacterium hafniense RepID=B8G264_DESHD Length = 540 Score = 570 bits (1469), Expect = e-161, Method: Composition-based stats. Identities = 174/536 (32%), Positives = 281/536 (52%), Gaps = 29/536 (5%) Query: 3 LEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRRIA 62 + + DR GL ++ D +E+ ++ + F + E +L+ ++ + Sbjct: 8 VRIDFVDRPGLGYDIFQRFEDHNADKIVMEVSHGQQMMIKFRSPDQEGSETLIRDLLTVQ 67 Query: 63 GVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRN 122 GV V V +MP ER L +L+ + E +++V+ KV N + Q+F + N Sbjct: 68 GVVSVTLVDYMPYERREQELKTILDLVSEGIIAVNTNHKVTHINEVAAQIFHTTPEEALN 127 Query: 123 HTAAQLIN-GFNFLRWLESEPQDSHNEHVVINGQ---NFLMEITPVYLQDENDQHVLTGA 178 A L L++ S E + Q +FL P+ N + + G Sbjct: 128 QDAELLFEADAPIFETLKTGIPYSLKERKIRKNQKLIHFLTSGVPIL----NKRGQIIGG 183 Query: 179 VVMLRSTIRMGRQLQNVAAQDVS-AFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTG 237 V+ ++ ++ L V + S F I+ S +M+ ++E A+ +A ++ +L+ G++G Sbjct: 184 VMTIKDFRQVEELLSKVERKPQSINFDSIIYESRRMRDLIETAKTVARGTSTILLRGESG 243 Query: 238 TGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQ 289 TGK+LFA A H SPR+ + ++ +NCA++P+ +ESELFG+ GKKG FEQ Sbjct: 244 TGKELFAKAIHAESPRSRQAFIPINCAALPDTLLESELFGYEEGSFTGATKGGKKGLFEQ 303 Query: 290 ANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQK 349 A+GG++ LDEIGE++P++Q +LLR L +GT RR+G E+ VDVR+I AT +NL EL+ K Sbjct: 304 AHGGTLFLDEIGEITPQVQVRLLRVLQEGTIRRIGGSKEIPVDVRIIAATHRNLEELIDK 363 Query: 350 GMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTR 409 G FREDLYYRLNV+ L++P LR+ P+DI + ++ + A + G L + +L Sbjct: 364 GQFREDLYYRLNVIPLHIPSLRERPEDIPLIAQVLTRKIARKLGKSEVHLTKESADLLRA 423 Query: 410 YAWPGNVRQLKNAIYRALTQLDGYELRPQDI--------LLPDYDAATVA----VGEDAM 457 WPGNVRQL+N + R + E++P LP ++ A + Sbjct: 424 QKWPGNVRQLENLLERIINLNSNSEIKPDSFYEWGDLTPALPVSESENTAHQLIIPFGEP 483 Query: 458 EGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKKNEE 513 L +I ++ ER VL ++ +PS+RK K LGVS+T I NK+ YGL + E Sbjct: 484 WPPLKDIVAQVERQVLLKVLAEHPSSRKAGKILGVSNTTILNKMNSYGLGKMDEPE 539 >UniRef50_C6Q1R8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Clostridium RepID=C6Q1R8_9CLOT Length = 525 Score = 561 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 160/522 (30%), Positives = 273/522 (52%), Gaps = 18/522 (3%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAEL-EFESFSSLMAEIR 59 +RLE+ +DR+G+ ++L L I + +E+ P ++Y+ L E S++ ++ Sbjct: 5 LRLEIISKDRIGMVLDILKKLYENNISIHSLEVFP-NKVYIKVENLQESAKKVSIIKKLL 63 Query: 60 RIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDR 119 I GV V+ V + E+ L A+++A+ + +L+++ ++++ N ++F K + Sbjct: 64 NIDGVIKVQEVELLSYEKNERKLLAIIDAVQDGILAINHNEQIELFNNYCEKIFHTKKEY 123 Query: 120 LRNHTAAQLIN-GFNFLRWLESEPQDSHNEHVVINGQ-NFLMEITPVYLQDENDQHVLTG 177 + QL+ + L++ + E N + NF + ++D+ Q + Sbjct: 124 IVGKNIRQLLGFDAPIINLLKTGKDYDNIEIFTKNAKSNFHYITSGRSVKDDKGQTL--A 181 Query: 178 AVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTG 237 AV L+ + +++ AF I+ S M + +A ++ +L+ G++G Sbjct: 182 AVASLKDINEAIEMTNVITSKEDLAFKDIIGNSASMVKTRKICMAVANGNSTILLRGESG 241 Query: 238 TGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGFFEQ 289 TGK+L+A A H+ S R+ K +LA+NCA++P++ +ESELFG+ GK G F+ Sbjct: 242 TGKELYAKAIHKLSSRSSKNFLAINCAALPDNLIESELFGYEKGSFTGAIEKGKDGLFKA 301 Query: 290 ANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQK 349 A+ G++ LDEIGE+S +QAKLLR L +GT R++G E +DVR+I AT +NL +++ K Sbjct: 302 AHNGTLFLDEIGELSLSLQAKLLRVLQEGTIRKIGSTIEQKIDVRIIAATNRNLEDMISK 361 Query: 350 GMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTR 409 FREDLYYRLNV+ + +P L+D +DI L F+ + G L Sbjct: 362 NTFREDLYYRLNVIPIYIPCLKDRIEDIPMLVNFFIKNLNKQMGKNIKGAEMAFIEKLVN 421 Query: 410 YAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGS----LDEIT 465 WPGNVR+LKN + RA+ G L+ +++++ + D E + L ++ Sbjct: 422 SNWPGNVRELKNVVERAMNLCHGSLLKEENLIMDFEKNSNYETASDDYEFNFNFKLKDVV 481 Query: 466 SRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 E+ L + Y S RK AK LGVSHT I NKL +Y + Sbjct: 482 EAAEKKALISAIKKYKSCRKAAKALGVSHTTIINKLNKYKID 523 >UniRef50_A1VG32 Sigma54 specific transcriptional regulator, Fis family n=5 Tax=Desulfovibrionales RepID=A1VG32_DESVV Length = 539 Score = 557 bits (1437), Expect = e-157, Method: Composition-based stats. Identities = 162/525 (30%), Positives = 264/525 (50%), Gaps = 24/525 (4%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIG---RIYLNFAELEFESFSSLMAE 57 ++LE+ +DR+G+ ++ LL G + +E++ +++ +F++L Sbjct: 16 LKLELVFKDRVGIVSDVSSLLAGEGYSIVCMEVERRHDRSHVHIEADGAGEGAFAALRQR 75 Query: 58 IRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKL 117 + G+ + R V +P+E + +L+ + + V+S+D ++ N + + +G Sbjct: 76 FESMRGLLECREVQTLPAEERENRIKVVLDTIGDGVMSIDGGGRITSINKVAREAYGCAG 135 Query: 118 DRLRNHTAAQL-INGFNFLRWLES-EPQDSHNEHVVINGQ-NFLMEITPVYLQDENDQHV 174 + + + L + L L E D+ E G+ F + TP+ + Sbjct: 136 EDVTERSLTSLRLPDHGLLDCLHGRELHDARRELATPLGKLQFFVTRTPI----RDGVGR 191 Query: 175 LTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITG 234 + GAV + R + + + + D F IV P ++ + A+++A A + I G Sbjct: 192 IIGAVEIARDMREIRKLARTLVDADHVGFDDIVGHHPAIEAAIAFARRVAATDAVIAIRG 251 Query: 235 DTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAP--------EGKKGF 286 ++GTGK+LFA A H S R P++ +NCA++PE +ESELFG+ EGK G Sbjct: 252 ESGTGKELFARAMHAESGRK-GPFVPINCAALPEQLLESELFGYERGAFTGGRREGKPGL 310 Query: 287 FEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVEL 346 FE A GG+V LDEIG+M QAK+LR + + RR+G + EV VD R+I AT + L + Sbjct: 311 FESARGGTVFLDEIGDMPLASQAKILRVMQEQRVRRIGGEAEVPVDARIITATNRPLERM 370 Query: 347 VQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTV 406 V+ G FR+DLYYR+NVL +++PPLR+ DI L F+ + A G P Sbjct: 371 VEDGRFRQDLYYRINVLPMHIPPLRERRGDIPLLANHFLQQLASRIGGAAPAFTDGALAR 430 Query: 407 LTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDA-----ATVAVGEDAMEGSL 461 L + WPGNVR+LKN + RA G + Q IL A +L Sbjct: 431 LRSHEWPGNVRELKNVVERAAILAGGAVVDDQFILFSHELGKGVFNAARTASAAGQGDTL 490 Query: 462 DEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 E + FE+ ++ + R PS RK AK LG+SHTA+ +K+R +G+ Sbjct: 491 KEQVANFEKKIVEDVVRRAPSIRKAAKILGISHTALLDKMRRHGV 535 >UniRef50_C4XRZ0 Fis family transcriptional regulator n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XRZ0_DESMR Length = 523 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 165/524 (31%), Positives = 265/524 (50%), Gaps = 21/524 (4%) Query: 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSS----LMAE 57 +L + DR+G+ ++ LL RG ++ +E+ F E++ E LM+ Sbjct: 3 KLHLKFTDRVGVVADISALLASRGHNILSMEVAQEHGCAHVFLEIDHERGDCPRKDLMSM 62 Query: 58 IRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKL 117 + G+ + + MP E++ L +L+ + E V+++D V + N + + F Sbjct: 63 LAACPGLLRISCIEAMPHEKQANLLRTVLDNVDESVVAIDASGCVTLINNVARENFKCGR 122 Query: 118 DRLRNHTAAQL-INGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLT 176 +L + L LE ++ ++V + + T + D +T Sbjct: 123 ADPVGRHVRELPLPDHAILGCLEGRRYNNVRKNVTVGRKRLQYFATGRPILDAEGG--VT 180 Query: 177 GAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDT 236 GAV + + + +++ FS I+ S M+ VV A+K+A A + I G++ Sbjct: 181 GAVEIAKDAQEIRDLAKSIYEPADVGFSDIIGASAAMRQVVAMAEKIASSEAIVTIRGES 240 Query: 237 GTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFE 288 GTGKD+ A A H AS G+ ++A+NCA++PE +ESELFG+ EGK G FE Sbjct: 241 GTGKDMLAQAMHAASGLPGQ-FVAINCAAVPETLMESELFGYVGGAFSGARREGKPGLFE 299 Query: 289 QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQ 348 A G+V DEI EM QAK+LR + +G RR+G+ E + R+I AT +NL + V+ Sbjct: 300 LAKDGTVFFDEIAEMPLAAQAKILRLIQNGRLRRLGDSRETQANARIITATNRNLEQFVE 359 Query: 349 KGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLT 408 KG+FREDLYYR+NVL L++PPLR+ P+DI L + F+ + + G L Sbjct: 360 KGLFREDLYYRINVLPLHIPPLRERPEDICALADHFLFQLSARLGKELTGFDPAARDKLV 419 Query: 409 RYAWPGNVRQLKNAIYRALTQLDGYELRPQDILL-----PDYDAATVAVGEDAMEGSLDE 463 R+ WPGNVR+LKN + RA D + + +LL D A AV + SL Sbjct: 420 RHGWPGNVRELKNVVERAAILCDQPVIGERHVLLVHELGRDPLAGGGAVSDVGGRLSLRA 479 Query: 464 ITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 R+ER +L + S R+ A+ LG+SHTA+ K++++ L+ Sbjct: 480 AMERYERDLLESALKGRKSLRQAARELGLSHTALLQKVKKHRLA 523 >UniRef50_C8X2X5 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X2X5_DESRD Length = 525 Score = 547 bits (1411), Expect = e-154, Method: Composition-based stats. Identities = 153/523 (29%), Positives = 262/523 (50%), Gaps = 19/523 (3%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSS---LMAE 57 ++L++ DR+G+ ++ +L I++ +E+D G + E + E S LM Sbjct: 2 IKLQLIFRDRVGIIADITAMLGEDSINILSMEVDASGDRTFVYFETQAEDLCSSDDLMRR 61 Query: 58 IRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKL 117 ++ I G+ ++ T+ MP E+ +L +L ++ + ++++D ++ +AN + +FG K Sbjct: 62 LKEIPGLLEISTIRTMPQEKRERSLEVILNSVSDGIVAIDEHRRIIVANRVARNIFGCKD 121 Query: 118 DRLRNHTAAQL-INGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLT 176 + L + + L L + + F + +D N + + Sbjct: 122 PEIIGRPIQALNLPDLSMLECLRGKRYHNVPRKCQTPAGLFHFFASAQPFKDSNGR--IV 179 Query: 177 GAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDT 236 GAV +++ + + VA F I+ SP + + A+++A +A + I G++ Sbjct: 180 GAVEVMKDMKEIKQLANFVADPARITFEDIIGKSPAITSAIAFAKQVARSNAVISIRGES 239 Query: 237 GTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFE 288 GTGK+LFA A H AS +L +NCA++PE +ESELFG+ +GK G FE Sbjct: 240 GTGKELFAQAIHHASG-LSGLFLPINCATLPEQLLESELFGYEGGSFTGADKQGKVGLFE 298 Query: 289 QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQ 348 +A G++ LDEI EM P QAKLLR + + RR+G E+ ++ R++ AT KNL +V+ Sbjct: 299 KAKDGTIFLDEIAEMPPNCQAKLLRVIQERRVRRIGGSAEIPINARIVTATSKNLESMVR 358 Query: 349 KGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLT 408 +FR+DLYYR+NVL + LP LR+ +DI L E F+ + + L L+ Sbjct: 359 DNLFRDDLYYRINVLPIYLPALRERLEDIPLLAEHFLFQLNYKLNKGHQLLTKGALEKLS 418 Query: 409 RYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLP----DYDAATVAVGEDAMEGSLDEI 464 +AWPGN+R+L+N I RA ++ + IL V L + Sbjct: 419 GHAWPGNIRELRNVIERAAILGGANQISQECILFSFEVGQRQEDPGGVYPSCSVEGLRDQ 478 Query: 465 TSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 ER +L Q S R+ A++L +SH+A+ NK+R++ L Sbjct: 479 LDSLERKLLQQALDRTASIRQAARQLRISHSALLNKMRKHKLG 521 >UniRef50_A3YA14 Sigma-54 dependent transcriptional regulator n=1 Tax=Marinomonas sp. MED121 RepID=A3YA14_9GAMM Length = 529 Score = 540 bits (1391), Expect = e-152, Method: Composition-based stats. Identities = 188/540 (34%), Positives = 297/540 (55%), Gaps = 44/540 (8%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRR 60 MRLE+ DR+G+++E+L + D+R +E+ G Y++ E ++ + ++ ++ Sbjct: 1 MRLEIRSNDRIGISQEILHIFSKSACDIRAMEVVT-GVTYVHVNE-SYQDSAKIIEQLYL 58 Query: 61 IAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRL 120 + GV + V MP+ER L+ALL +P+P++ +D + + N A+ L + + L Sbjct: 59 VQGVLSCQEVALMPAERRENHLTALLNRIPDPIIDLDENACILALNHAAIALLDRPDETL 118 Query: 121 RNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVV 180 + + L+ + ++ ++ + ++ EI+PV ++ + + GA++ Sbjct: 119 EGLSINTFTDQ----NLLQGLGANLSSQSILFKQKAYMAEISPVLMEGK-----VRGALL 169 Query: 181 MLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGK 240 MLR+ +GRQ+ + +Q QI+ S ++ + +Q ++ A L P+LI G+TGTGK Sbjct: 170 MLRNMNSLGRQMSLMQSQKEQGLEQIIGESETVQLLKQQTRRFAQLQLPVLIQGETGTGK 229 Query: 241 DLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANG 292 +L A HQ S + +LALNCAS+PE +ESELFG+A GK G E A+G Sbjct: 230 ELIARGLHQESEQRESAFLALNCASLPEHLLESELFGYASGAFTGAKKGGKPGLLELADG 289 Query: 293 GSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMF 352 G++ LDE+ EMS +QAKLLRFL D FRRVG HE+ V+VR+I AT ++L +L++ G F Sbjct: 290 GTLFLDEVAEMSIYLQAKLLRFLQDFRFRRVGGSHEISVNVRIISATHQDLQQLIETGRF 349 Query: 353 REDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAW 412 R DLYYR+NVL L LPPLR DI+ L + F+ A + +P PK++ L Y+W Sbjct: 350 RADLYYRINVLNLVLPPLRQRGDDILLLVKHFIHSAARQVDMPTPKISESALARLKAYSW 409 Query: 413 PGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGED---------AMEGSLDE 463 PGN+RQL+N ++R + G L ++I A +D E LD+ Sbjct: 410 PGNIRQLQNLLFRIVALNRGEWLSDKEINESLNLTFASASKQDHQPDANLSVTPEVPLDK 469 Query: 464 ----------------ITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 + FE S+L LY YPSTRKLAKRLGVSH +A KL+++ + Sbjct: 470 VFDDVIENENLVSWAGAQANFEASLLNHLYPLYPSTRKLAKRLGVSHNKVALKLKQHNIK 529 >UniRef50_Q48G07 Transcriptional regulator PhhR n=28 Tax=cellular organisms RepID=Q48G07_PSE14 Length = 526 Score = 534 bits (1377), Expect = e-150, Method: Composition-based stats. Identities = 225/522 (43%), Positives = 321/522 (61%), Gaps = 15/522 (2%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEI--DPIGRIYLNFAELEFESFSSLMAEI 58 MR++V C++R+G+ R++LDLLV G+++ E+ + IYL+ L F +L + Sbjct: 1 MRIKVHCQNRIGILRDILDLLVAYGVNVARGEVGGEHGDAIYLHCPNLINLQFQALRPKF 60 Query: 59 RRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLD 118 I GV V+ V MPSER H+ L+ALL AL PVLS+DM + AN A+ QL G ++D Sbjct: 61 EAITGVFGVKRVGLMPSERRHMELNALLGALEFPVLSIDMVGAIVAANRAAAQLLGVRVD 120 Query: 119 RLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGA 178 + ++ F+ + + + V + G FL +I P + +D + GA Sbjct: 121 EVPGMPLSRYAEDFDLPELVRASQSRINGLRVKVRGDVFLADIAP-LQSEHDDSEAMAGA 179 Query: 179 VVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGT 238 V+ L R+G ++ NV Q++ I S M VV +A+++A L APLLI G+TGT Sbjct: 180 VLTLHRADRVGERIYNVRKQELRG---IFQSSKVMAAVVREARRMAPLDAPLLIEGETGT 236 Query: 239 GKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAP--------EGKKGFFEQA 290 GK+L A ACH ASPR P +ALNCA + E E ELFG+ P EG+ G E Sbjct: 237 GKELLARACHLASPRGQSPLMALNCAGLSESMAEIELFGYDPGAFEGARAEGRLGLLELT 296 Query: 291 NGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKG 350 GG++ LD +GE+S RMQAKLLRF+ DG+FRRVG D ++ +DVRV+C+TQ L EL +G Sbjct: 297 AGGTLFLDGVGELSARMQAKLLRFIQDGSFRRVGSDEDMFLDVRVMCSTQVELSELCAQG 356 Query: 351 MFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRY 410 +FR+DLY+RLNVL+L++PPLRDC + PL E F+ + + G P P +A L++Y Sbjct: 357 VFRQDLYHRLNVLSLHIPPLRDCLDGLEPLVEHFLDHASRQIGCPLPGIAPAAIKRLSQY 416 Query: 411 AWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFER 470 WPGNVRQL+N +++A++ DG +++ + I LPDY + + ++EG LD I RFE+ Sbjct: 417 HWPGNVRQLENVLFQAVSLCDGSKVQAEHIRLPDY-GVRPGLSDVSLEGGLDAIIGRFEK 475 Query: 471 SVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKKNE 512 SVL LY YPS+R+L KRLGVSHT IANKLR Y L ++ Sbjct: 476 SVLEHLYAQYPSSRQLGKRLGVSHTTIANKLRGYELGRESGR 517 >UniRef50_A3Y5W7 Transcriptional regulatory protein n=1 Tax=Marinomonas sp. MED121 RepID=A3Y5W7_9GAMM Length = 514 Score = 531 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 209/521 (40%), Positives = 311/521 (59%), Gaps = 24/521 (4%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDP-IGRIYLNFAELEFESFSSLMAEIR 59 M+L + C DR G+ +++LD+L + IDL GIEI+ G +L+ ++ S ++MAEIR Sbjct: 1 MQLAIACTDRTGIAQDVLDILAHQDIDLTGIEINHEQGGFFLSTEQVALASMQTVMAEIR 60 Query: 60 RIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDR 119 ++ GV DV+T ++P L + + L EP+ S+D+ K M+N A+ LF L++ Sbjct: 61 KVEGVKDVKTTSYLPMSHSLYELENITDQLNEPLFSMDLNGKRVMSNQAANTLFSWPLEK 120 Query: 120 LRNHTAAQLINGFNFLRWLESEPQDSHN--EHVVINGQNFLMEITPVYLQDENDQHVLTG 177 ++ I+ L+ E Q H +++ N + FL EI + Q + D H L Sbjct: 121 TKHK-----IDCLALLQLTELPSQYGHPSYQNLQFNQRPFLAEIRLIQ-QKQLDSHYL-- 172 Query: 178 AVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTG 237 V L S + L + V+ + AVS KM+ +++ APLLI+G+TG Sbjct: 173 --VRLLSPKYLSNCLHQAQSNPVNP-EPLQAVSLKMRKLLKVIDVATRSEAPLLISGETG 229 Query: 238 TGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAP--------EGKKGFFEQ 289 TGKDL A H R + +L L+CA++P++ E+ELFGHAP EGKKG + Sbjct: 230 TGKDLLATMSHNQGSRKEQAFLVLSCATLPDNVAENELFGHAPFAFSNEDEEGKKGLLQL 289 Query: 290 ANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQK 349 A+ G++ LDE+G+MS +Q KLLRFL G FRRVG++ E+ VDVR+ICATQ ++++ VQ Sbjct: 290 ADKGTLYLDEVGDMSAILQVKLLRFLEQGKFRRVGDEKEIQVDVRIICATQHDILDKVQS 349 Query: 350 GMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTR 409 G FR+DLYYRLNVL++NLPPLR+ +DI+PL E FV F EQG P L+ D L Sbjct: 350 GEFRQDLYYRLNVLSVNLPPLRERKEDIIPLAEHFVHTFCAEQGKPALSLSEDCCQALIN 409 Query: 410 YAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAAT--VAVGEDAMEGSLDEITSR 467 Y WPGNVRQLKN + +++ + +D+ LP Y + EGSL++ + Sbjct: 410 YPWPGNVRQLKNVLLPSVSMAQNTLIDAKDLALPQYQPTQDVQKLNLTEFEGSLEQAMKQ 469 Query: 468 FERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQ 508 +E +L L+ +YPS+R LAK+LG+SHTAIANKL+E+G+++ Sbjct: 470 YECQLLKSLFPSYPSSRLLAKKLGLSHTAIANKLKEHGINK 510 >UniRef50_Q2FA16 TyrR n=1 Tax=Vibrio sp. DAT722 RepID=Q2FA16_9VIBR Length = 460 Score = 529 bits (1364), Expect = e-149, Method: Composition-based stats. Identities = 220/460 (47%), Positives = 307/460 (66%), Gaps = 7/460 (1%) Query: 55 MAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFG 114 MAEIRRI+GV DVR + +MP ER + L +L++ LP+PV ++D+K VDMAN A+ L G Sbjct: 1 MAEIRRISGVKDVRKIQFMPMERHNTELLSLVDNLPDPVFAIDLKGAVDMANMAALSLLG 60 Query: 115 QKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHV 174 Q + L+ F RW E + E +VI+G ++++E+ PVY++DE Sbjct: 61 QHKQDVIGTQIGTLLPSVRFSRWSEGVNARTR-ESLVIDGLDYILELMPVYIKDEAQNST 119 Query: 175 LTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITG 234 L ++ +RS+ + + + + + F V +S + + ++ QA+KL++L PLLI G Sbjct: 120 LASTLMTIRSSQQGSQIEETLPLHNQLGFEHFVGLSNRHRALINQAKKLSVLDQPLLIEG 179 Query: 235 DTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE------GKKGFFE 288 +TGTGK++ A ACH S RA KP+L L+CAS+P+D E+ELFGHAP G KG FE Sbjct: 180 ETGTGKEMLAKACHSRSGRASKPFLVLSCASMPDDVAETELFGHAPGSFNHEQGHKGIFE 239 Query: 289 QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQ 348 QANGG+V LDEIGEMS +Q KLLRFL DG FRRVG + E+HVDVR+I +T+ NL EL + Sbjct: 240 QANGGTVFLDEIGEMSSHLQIKLLRFLQDGNFRRVGAEDEMHVDVRIIASTKHNLAELAE 299 Query: 349 KGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLT 408 G FREDLYYRLNVLTLN+PPLR D+ PL +LFV + A + G+ +P+L +L L Sbjct: 300 AGKFREDLYYRLNVLTLNIPPLRKRSNDVAPLLDLFVTKHAQQLGIDKPELDEELVDALA 359 Query: 409 RYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRF 468 Y WPGN+RQL N + RALT++DG+ L+ ++ LP A ++GSLDEI + Sbjct: 360 NYQWPGNMRQLDNMVLRALTEMDGHVLKAENFNLPQPQAMGGTSTTLNLDGSLDEIMRDY 419 Query: 469 ERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQ 508 E +L +LY+++PS+RKLAKRL VSHT+IANKLR+YG+ + Sbjct: 420 ESQILERLYQSFPSSRKLAKRLNVSHTSIANKLRDYGIRK 459 >UniRef50_C9KM56 Sigma-54 dependent transcriptional regulator/sensory box protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KM56_9FIRM Length = 560 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 152/493 (30%), Positives = 238/493 (48%), Gaps = 44/493 (8%) Query: 40 YLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMK 99 + F E +F +M E I GV + + ER L +LE++ + + VD Sbjct: 85 MVRFLESDF-----IMNEASEIHGVDKLLHENALMQER----LQMILESVQDGICVVDRS 135 Query: 100 SKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLM 159 +V NP+ ++ + + + + N L S + +G + Sbjct: 136 GEVTYVNPSYLRIVHKTPEMVVGQNVFETAADGNRCAVLRSGIARIGSIRHKKDGTTIVA 195 Query: 160 EITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVA----------------AQDVSAF 203 + P+++ E + G V +++ + ++ ++ + AF Sbjct: 196 NVNPIFVDGE-----IAGVVSVIKDITEIQTLMERLSQVSAKAEYLEQELLRTKKTAQAF 250 Query: 204 SQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNC 263 + + S K+ V+ A K A SA +LI G++GTGK++ A H AS R P++ +NC Sbjct: 251 ANYIGKSGKVVDVLALASKAADSSANVLIRGESGTGKEVIAEGIHYASGRRRGPFIRVNC 310 Query: 264 ASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLN 316 +IP +ESELFGH A K G FE AN G++ LDEIGE+ +Q KLLR L Sbjct: 311 GAIPGALLESELFGHEKGAFTGAVRRKLGKFELANHGTIFLDEIGELDKNLQVKLLRVLQ 370 Query: 317 DGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQD 376 F RVG + +HVDVR+I AT ++L +V++G FR+DLYYRLNV+ + LPPLRD P D Sbjct: 371 QKEFDRVGGEETIHVDVRIIAATNRDLEAMVREGTFRDDLYYRLNVIPIILPPLRDRPDD 430 Query: 377 IMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELR 436 I L E F+ + + E + D + Y WPGNVR+L+N I R +T +D + Sbjct: 431 IPLLVEHFIEKISKENKKDVRGITPDAMQMFMHYRWPGNVRELENVIERVITLMDTDLIT 490 Query: 437 PQDILLPDYDAATVAVGEDAMEGSLDEIT---SRFERSVLTQLYRNYPSTRKLAKRLGVS 493 +LP Y +A E ++ D+ +E+ ++ R S AK L +S Sbjct: 491 AA--MLPSYIKGDIAGRE--VQSLADDTVLPWEEYEKQIIANALRQGTSFNGAAKLLRIS 546 Query: 494 HTAIANKLREYGL 506 H +A K R+YGL Sbjct: 547 HKTVAAKARKYGL 559 >UniRef50_B8DQH7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DQH7_DESVM Length = 604 Score = 524 bits (1350), Expect = e-147, Method: Composition-based stats. Identities = 168/605 (27%), Positives = 262/605 (43%), Gaps = 103/605 (17%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGR---------------------- 38 +R+E DR+G+ +L LL + + + +E++ Sbjct: 3 LRMECIFRDRVGIVSDLSSLLAGQALSIVSMEVERRPGGAAATLPTCAIADLTPGPASAP 62 Query: 39 ------------------------IYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMP 74 +YL ++L + RI + + R V +P Sbjct: 63 PPSPAPSPVPGPAHAPAFGMDRAFVYLEADSSRDVDRAALFETLGRIPDLLEFRIVDTLP 122 Query: 75 SEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQ----------------KLD 118 +E LL+ L + VLS+D + +V N + + +G Sbjct: 123 AEERANRFLVLLDNLRDGVLSIDAEGRVTSINKVAREAYGCTGAPGVSGTSGTPGGTPAA 182 Query: 119 RLRNHTAAQL-INGFNFLRWLESEPQDSHNEHVVINGQ---NFLMEITPVYLQDENDQHV 174 L L + L L V G F + P+ + + Sbjct: 183 DLSGLPLDALGLPDRGILDCLSGRELVDAKREVATPGGGRLQFFVTRRPI----RDGEGR 238 Query: 175 LTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITG 234 + GAV + R + + +++ F IV P + + A+++A + + I G Sbjct: 239 IIGAVEVARDMREIRKLARSITEPAQVTFGDIVGQHPAIGFAISFARRVAATDSIIAIRG 298 Query: 235 DTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGF 286 ++GTGK+LFA A H AS R P++ +NCA++PE +ESELFG+ GK G Sbjct: 299 ESGTGKELFARAIHTASGR-QGPFVPVNCAALPEQLLESELFGYEAGAFTGGRRDGKPGL 357 Query: 287 FEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVEL 346 FE A GG+VLLDEIG+M QAK+LR + +G+ RRVG EV VDVR+I AT + L L Sbjct: 358 FETARGGTVLLDEIGDMPLASQAKMLRVMQEGSVRRVGGTAEVPVDVRIITATNRTLERL 417 Query: 347 VQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTV 406 V++G FR+DLYYR+NVL +++PPL++ P DI L E F+ A G P L+ Sbjct: 418 VEEGRFRQDLYYRINVLPIHIPPLKERPGDIAVLAEHFLLGLAARLGGPVRSLSPGALAR 477 Query: 407 LTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAM--------- 457 L + WPGNVR+LKN + RA + + IL + + Sbjct: 478 LAGHHWPGNVRELKNVVERAAILCPDDVVGARFILFAHELEGGLFGESARLADGVADTVA 537 Query: 458 ---------------EGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLR 502 EG L ++ + FE+ ++ S RK A++LG+SHTA+ +KLR Sbjct: 538 DAAALASGHEHHGDGEGRLKDMIAVFEKRIIVDAVAAAGSVRKAARKLGISHTALLDKLR 597 Query: 503 EYGLS 507 +GL Sbjct: 598 RHGLR 602 >UniRef50_Q484S1 Sigma-54 dependent transcriptional regulator n=1 Tax=Colwellia psychrerythraea 34H RepID=Q484S1_COLP3 Length = 532 Score = 523 bits (1349), Expect = e-147, Method: Composition-based stats. Identities = 181/539 (33%), Positives = 301/539 (55%), Gaps = 39/539 (7%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDP-IGRIYLNFAELEFESFSSLMAEIR 59 MR+ + DR+G+++E+L + + +L+ +EI +++ +A L S +A Sbjct: 1 MRVVIESSDRIGISQEILAIFAKQAWNLKTVEITSCFTYVHVEYAALTLSSIRECLAS-- 58 Query: 60 RIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQK--- 116 + GV V + +PSE+ L ALL+ +PEP++ VD + N AS +L K Sbjct: 59 -VIGVNSVEVINLLPSEQRESHLQALLDKMPEPIIDVDSNGLILAMNKASHKLKPSKDAT 117 Query: 117 -----LDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQD--- 168 + N + + ++ V I G+ ++++++PV + Sbjct: 118 EPELVTTDYLGKPIEAFLGQINKTMLTNA----ATSQAVTIEGRAYILDVSPVISSNSST 173 Query: 169 --ENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAML 226 +++ ++G+V++ RS +GRQ+ + + +F I+ S + + Q+++ A L Sbjct: 174 LEQDNTGQVSGSVLLFRSMNTLGRQISLMQSHQDHSFDSIIGQSKSISLIKAQSKRFAEL 233 Query: 227 SAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA------- 279 P+LI+G+TGTGK+L A A HQAS R+ P+LA+NC+++PE +ESELFG+A Sbjct: 234 DLPVLISGETGTGKELIARALHQASSRSKAPFLAINCSALPEHLLESELFGYASGAFTGA 293 Query: 280 -PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICA 338 GK G E A GG + LDEI EMSP +QAKLLRFL D T+RRVG E+ ++R++ A Sbjct: 294 QKGGKPGLIELAEGGCLFLDEIAEMSPYLQAKLLRFLQDLTYRRVGGTKELVANIRIVSA 353 Query: 339 TQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFA------DEQ 392 + ++L +L+ + FREDLYYRLNVL+++LPPLR+ D+ L LF+ A + Sbjct: 354 SHQDLAKLISQKTFREDLYYRLNVLSIDLPPLRERMADMSLLANLFIENAAKQVSNSQQT 413 Query: 393 GVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDIL-LPDYDAATVA 451 + +PKL A ++L +AWPGN+RQL+N ++ + +G ++ D+L + + A Sbjct: 414 DIAKPKLTAQALSLLQGFAWPGNIRQLQNVLFSVVALNNGGDICADDLLQVLNKHAGKQQ 473 Query: 452 VGEDAMEGSLDE---ITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 + D ++ + + FE +L L+ +P+TRKLA+RL VSH IA KLRE+G+ Sbjct: 474 LSNDIDIQTIKDWSSAQADFEAKLLEHLHPLFPTTRKLAERLNVSHNKIAMKLREHGIK 532 >UniRef50_A5D1E1 Transcriptional regulator n=3 Tax=Bacteria RepID=A5D1E1_PELTS Length = 507 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 147/472 (31%), Positives = 243/472 (51%), Gaps = 34/472 (7%) Query: 67 VRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAA 126 VR + + + R L +LEA + + D + + N A ++ G D + A Sbjct: 21 VRNMGILEARRFASELEQVLEASHDGIFITDGQGVILRVNSAWERICGISRDFVVGKNAQ 80 Query: 127 QLINGFNFLR-----WLESEPQDSHNEHVVIN---GQNFLMEITPVYLQDENDQHVLTGA 178 ++++ + L+++ + + + GQ + PV + N + V+ Sbjct: 81 EMVDKGFWSESAAICALKAKKEVTIMLKMTKGEKVGQKIMATGIPVMDDEGNIKRVVVNV 140 Query: 179 -----VVMLRSTIRMGRQLQNVAAQDVSA-------FSQIVAVSPKMKHVVEQAQKLAML 226 +V LR + +QL A ++ + IVA SPK K V++ A ++A + Sbjct: 141 RDITEIVNLRDQLEETQQLNEKYAAELEQMRIQHVQYDNIVASSPKTKRVLDMAAQVAKV 200 Query: 227 SAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA------- 279 + +LITG++G GK++ A H S R+ P + +NC +IPE+ +ESELFG+ Sbjct: 201 DSTVLITGESGVGKEIVANVIHCLSHRSKGPLIKINCGAIPENLLESELFGYEPGAFTGA 260 Query: 280 -PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICA 338 +GK G FE A G++ LDE+GE+S +Q KLLR L D RVG + VDVR++ A Sbjct: 261 RKQGKPGMFELAEKGTLFLDEVGELSLNLQVKLLRVLQDHEVLRVGGLKPIPVDVRIVAA 320 Query: 339 TQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPK 398 T K+L+E+V+K FR+DLYYRLNV+++ +PPLR+ +DI L F+ + + G + Sbjct: 321 TNKDLMEMVRKEKFRDDLYYRLNVVSIEIPPLRERREDIPLLALHFLEKINKKYGFN-KR 379 Query: 399 LAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGED--- 455 A D+ L+ Y WPGN+R+L+N I R + E+R I LP ++ D Sbjct: 380 FAPDVIDRLSAYPWPGNIRELENVIERVMVMTKSDEIRT--IHLPGNIKNLSSLQNDIMF 437 Query: 456 AMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 + L + E+ ++ Q + Y STRK+A+ L V+ + I K+++Y LS Sbjct: 438 SEIMPLKKAVEHVEKHLIEQALKKYGSTRKVARALKVNQSTIVRKIKKYKLS 489 >UniRef50_A5D2K0 Transcriptional regulator n=2 Tax=Clostridia RepID=A5D2K0_PELTS Length = 568 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 139/515 (26%), Positives = 245/515 (47%), Gaps = 21/515 (4%) Query: 8 EDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDV 67 +D + +T +L+ +D+ IE + + ++ S + + A+ + Sbjct: 48 KDGVFVTENFCELVKFNNLDVI-IETTGVPEVQEKLRQIRGNSTALMEAQAANLMMAILK 106 Query: 68 RTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQ 127 + +R LSA+L ++ E + D+ + NPA ++ G + Sbjct: 107 EKEELLEFKRIQGELSAILNSMQEAIEVADINGVIKYVNPAFSRITGIPEKERIGQNIFE 166 Query: 128 LINGFNFLRWLESEPQD-SHNEHVVINGQNFLMEITPVYLQDENDQHV--------LTGA 178 L++ V + + + P+ + + + V + Sbjct: 167 ASPDGALATVLKTGKVVFGQRTKVGGSNADVVSNSAPIVVDGKMEGAVCVFQHFTDIMNL 226 Query: 179 VVMLRSTIRMGRQLQNVAAQ---DVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGD 235 + L+ + + L + Q +F I+ SP+++ + A+K A ++ +LI G+ Sbjct: 227 MEELKKSTTIIENLTDKLGQVTTSKYSFDDIIGDSPELRKCITLAEKSAQSNSTVLILGE 286 Query: 236 TGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPEG-------KKGFFE 288 +GTGK+L A+A H AS R P++ +NCA+IP+ +ESE FG+A K G FE Sbjct: 287 SGTGKELLAHAIHAASMRRENPFIKVNCAAIPDTLLESEFFGYAKGAFTGAVKSKIGKFE 346 Query: 289 QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQ 348 A+GG++ LDEIG+M+ +QAKLLR L + F RVG + + VDVRVI AT +NL EL++ Sbjct: 347 LAHGGTIFLDEIGDMNLLLQAKLLRVLQEMEFERVGGNQTIKVDVRVIAATNRNLRELIR 406 Query: 349 KGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLT 408 +G FREDLYYRLNV+ + +PPLR +D+ L + + G ++ D VL Sbjct: 407 QGRFREDLYYRLNVVEITMPPLRARKEDLPALVSHLITSLNRKLGKNVKGISKDAEEVLF 466 Query: 409 RYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRF 468 Y WPGNVR+L+N I R + D L ++ + + ++ D ++++ Sbjct: 467 SYDWPGNVRELENVIERVMVTADEEILTKKNFIQ-HVNQFRMSSERDVDLMPIEQMEEML 525 Query: 469 ERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLRE 503 R +++ R+ A+ L +S + NKL++ Sbjct: 526 IRKAISKFGNTVEGKRRAAQALNISLATLYNKLKK 560 >UniRef50_A4J593 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J593_DESRM Length = 582 Score = 520 bits (1341), Expect = e-146, Method: Composition-based stats. Identities = 137/450 (30%), Positives = 235/450 (52%), Gaps = 23/450 (5%) Query: 82 LSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESE 141 +L+ + E + +D +V + NP + +L+ K +++ + + + + Sbjct: 133 FETVLDQVNESICGIDKLHRVMIWNPKAEELYNVKAEKILSGRIEDFFSNLRISNCMHEK 192 Query: 142 PQDSHNEHVVINGQNFLMEITPVYLQDENDQHV-----LTGAVVMLRSTIR-------MG 189 + H G + L+ PV+ + + +T V + + + + Sbjct: 193 KEVRGLYHQPCEGAHVLINSAPVFDSGKVIGGLAVEKDITEIVQLNQELNKASTQVKLLE 252 Query: 190 RQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQ 249 ++++ ++ QD AF++++ S ++ ++ +K+++ A +L+ G++GTGK+L A A HQ Sbjct: 253 QEIRKISGQDC-AFNKLIGRSEAIQKLIVFGKKISVTEATVLLRGESGTGKELLARAIHQ 311 Query: 250 ASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIG 301 SPR P++ +NC +IP + ESELFG+ +GK G FE ANGG++ LDE+G Sbjct: 312 NSPRHMNPFIVVNCGAIPNNLFESELFGYEGGAFTGADRKGKPGMFELANGGTLFLDEVG 371 Query: 302 EMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLN 361 EM MQAKLLR L +GTF RVG VHV+VRV+ AT +NL +++ + FREDLYYRLN Sbjct: 372 EMPIEMQAKLLRVLQEGTFYRVGGSQSVHVNVRVLAATHRNLEDMINRRQFREDLYYRLN 431 Query: 362 VLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKN 421 V+ L +PPLRD +DI L LF+ F + K+ + T Y WPGNVR+LKN Sbjct: 432 VVALEIPPLRDRREDIPELVHLFMQEFCQKYDKNIKKIEPAVMTAFLDYTWPGNVRELKN 491 Query: 422 AIYRALTQLDGYELRPQDILLPDYDAATVA-VGEDAMEGSLDEITSRFERSVLTQLYRN- 479 A+ R + DG + + ++ V +G L + E+ ++ + + Sbjct: 492 AVERLVVLTDGDIIDEAALPENLRRNTYISLVTSPVSQGKLMNVAVEAEKQLILKTLQQV 551 Query: 480 YPSTRKLAKRLGVSHTAIANKLREYGLSQK 509 + + A+ LG+ + + KLR+ G+ K Sbjct: 552 RGNRSEAARVLGIPRSTLYYKLRQLGIPAK 581 >UniRef50_B8F9P3 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8F9P3_DESAA Length = 699 Score = 520 bits (1340), Expect = e-146, Method: Composition-based stats. Identities = 153/482 (31%), Positives = 249/482 (51%), Gaps = 40/482 (8%) Query: 64 VTDVRTVPWMPSEREH-----LALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLD 118 + D+ + + +E EH + L A++E+ + + D + + N A + G + + Sbjct: 221 LQDISELEAISNELEHTRRISMELDAIIESSFDGIYVTDGEGRTLRVNKAYERTTGIRRE 280 Query: 119 RLRNHTAAQLINGFNF-----LRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQH 173 + HT A+L+ F +R LE+ +S + V G+ ++ TP++ +D+ Sbjct: 281 DVVGHTMAELVEQGFFNESVSMRVLENRKGESLVQKV-KTGKTVMVTGTPIF----DDKG 335 Query: 174 VLTGAVVMLRSTIRMGRQLQNVAAQD----------------VSAFSQIVAVSPKMKHVV 217 ++ V +R + + + A +V S KMK V Sbjct: 336 EISLVVTNVRDVTELYNLQNELGRMEVLRTWYENELEQLRESAGAAPSVVIRSKKMKEVH 395 Query: 218 EQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFG 277 E A +LA + A +L+ G++G GK++FA H SPR KP++ ++CA+IPE +ESELFG Sbjct: 396 ELAMRLARVDATVLVQGESGVGKEIFADLIHTNSPRKDKPFVKISCAAIPEQLLESELFG 455 Query: 278 HAPE--------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEV 329 + GK G FE A+GG++ LDEIGEM +QAKLLR L D RVG +H + Sbjct: 456 YEAGAFTGAKAKGKAGIFESADGGTIFLDEIGEMPLSLQAKLLRVLQDKKIMRVGANHSM 515 Query: 330 HVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFA 389 VD+R++ AT ++L ++V KG FR DLY+RLNV+ + +PPLR+ + I+ F+ ++ Sbjct: 516 DVDIRILAATNRDLSQMVHKGAFRNDLYFRLNVVPVVIPPLRERKEAIVNFAYHFLEKYN 575 Query: 390 DEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAAT 449 + G ++A D+ +L Y WPGNVR+L+N + R + G + P D+ A Sbjct: 576 RKYGF-AKQIAPDVLDILYDYDWPGNVRELENTVERMVVVTKGDVIEPADLPEKLRIAPK 634 Query: 450 VAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQK 509 + GSL ER +L Q + ST K+AK LGV+ + + KL+ YG+ K Sbjct: 635 SGLAHALGGGSLKSALEGLEREILQQALETHGSTHKVAKALGVNQSTVVRKLQRYGIDPK 694 Query: 510 KN 511 K+ Sbjct: 695 KS 696 Score = 73.9 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 67/166 (40%), Gaps = 19/166 (11%) Query: 54 LMAEIRRIAGVTDVRTVPWMPSEREH-------LALSALLEALPEPVLSVDMKSKVDMAN 106 L+AE RI GV V SE+ H +S L+++ PV+++D + V N Sbjct: 96 LVAESGRIIGVVSRSRV----SEQIHKGSLSVMRRMSIFLDSIYNPVVAIDAEGLVIFCN 151 Query: 107 PASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYL 166 + ++ G+ ++ + L +R + + +S + V + G+ ++ TP+++ Sbjct: 152 KSLAKVSGKSVEEILGKPIGDLFEDSQLIRIIRTGKAES-TQKVRLGGKVYMTNRTPIFM 210 Query: 167 QDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSA--FSQIVAVS 210 + GA +L+ + + + I+ S Sbjct: 211 -----GGRIVGATAVLQDISELEAISNELEHTRRISMELDAIIESS 251 >UniRef50_Q3ACP6 Sigma-54 dependent transcriptional regulator n=4 Tax=Thermoanaerobacteraceae RepID=Q3ACP6_CARHZ Length = 630 Score = 518 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 136/457 (29%), Positives = 241/457 (52%), Gaps = 28/457 (6%) Query: 68 RTVPWMPSEREHLA-LSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAA 126 R + SE+E + +++ + + +++VD ++ + N + ++F + + Sbjct: 183 RLAEAIKSEKEKTEQIKTIVDFVHDGIIAVDKDGRISIYNKMAEKIFKKLPSEVIGKKVE 242 Query: 127 QLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRST- 185 +I +++ + + I+G P+ + +E + GAV + Sbjct: 243 TVIPNTRLYEVIKTGKPEI-GKIQEISGTMIATNRVPIVVGNE-----VVGAVATFQDVA 296 Query: 186 ------IRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTG 239 ++ R+L + F I+ +S KMK VV QA+K A+L + +LI G+TGTG Sbjct: 297 EIQNMEQKIRRRLADKGLIASFKFDDIIFISDKMKDVVNQAKKYALLDSTVLILGETGTG 356 Query: 240 KDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQAN 291 K+LFA + H AS R P++A+NCA++PE+ +ESELFG+A GK G FE A+ Sbjct: 357 KELFAQSIHNASERKNGPFVAINCAALPENLLESELFGYAEGAFTGARKGGKAGLFELAH 416 Query: 292 GGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGM 351 G++ LDEIGEM +Q+KLLR + + R+G+D + VDVR+ICAT +NL+E++ +G Sbjct: 417 KGTIFLDEIGEMPMGLQSKLLRVIQEKKVMRIGDDRLIPVDVRIICATNRNLIEMINEGK 476 Query: 352 FREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYA 411 F+ DL+YR+++L +++P LR+ +DI L F+ +++ + + +L ++ Sbjct: 477 FKRDLFYRISILQIHIPSLRERKEDIEVLVPYFIKKYSLICKKHIQGITSRGMELLKKWD 536 Query: 412 WPGNVRQLKNAIYRALTQLDGYELRPQDILL---PDYDAATVAVGEDAMEGSLDEITSRF 468 +PGNVR+L++ I RA +G + +DI L D V+ LDEI + Sbjct: 537 YPGNVRELESIIERACAICEGNIIDVRDIKLYNDQDSMENKVSSQSFLEIKPLDEIEKEY 596 Query: 469 ERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYG 505 + V+ + + AK+LG+S T + KL+ + Sbjct: 597 IKKVIKF---TDGNLSEAAKKLGISRTTLWRKLKNFN 630 >UniRef50_C3AI49 Sigma54 specific transcriptional regulator, Fis n=5 Tax=Bacillus RepID=C3AI49_BACMY Length = 465 Score = 517 bits (1332), Expect = e-145, Method: Composition-based stats. Identities = 139/455 (30%), Positives = 230/455 (50%), Gaps = 24/455 (5%) Query: 81 ALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLI--NGFNFLRWL 138 L LL ++ E + V+ K + N A+ +++ K +++ + L+ L Sbjct: 11 TLHTLLSSVEEAISIVNTKGIMLYWNEAAEKMYDIKKEKIIGRNVQEFFLKEDIMNLKVL 70 Query: 139 ESEPQDSHNEHVVINGQNFLMEITPVYLQDEN------DQHVLTGAVVMLRSTIRMGRQL 192 E++ H+ ++ L+ TP+Y ++ + +T + + +L Sbjct: 71 ENQQPVRDIYHLPRPDKHVLISTTPIYNENNELIGSMSVEKDITATIKLNEKLTSTSEEL 130 Query: 193 QNVAAQ-----DVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYAC 247 Q + Q FS I + ++H++ +K+A A +LITG++G GK+LFA A Sbjct: 131 QQLKQQMIQNNRDDPFSNIKGNNLAIQHIIHDMKKVAKTDATILITGESGVGKELFAQAI 190 Query: 248 HQASPRAGKPYLALNCASIPEDAVESELFGH--------APEGKKGFFEQANGGSVLLDE 299 H+AS R+ K ++ +NC +IP ESELFG+ A GK G E A+GG++ LDE Sbjct: 191 HEASLRSKKAFIPINCGAIPNALFESELFGYESGAYTGAAKGGKPGKIELADGGTLFLDE 250 Query: 300 IGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYR 359 +GE+ MQ KLLR L + R+G +DVR+I AT + L ++V G FR DL+YR Sbjct: 251 VGELPLDMQVKLLRALQEKEIYRIGGQTPKKIDVRIIAATNRILEDMVLNGTFRSDLFYR 310 Query: 360 LNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQL 419 LNV T +PPLR+ DI L F F+ + P P + + L Y+WPGN+R+L Sbjct: 311 LNVFTACIPPLRERTDDISYLAHHFFKEFSFKYNKPTPFVHQEATKRLHAYSWPGNIREL 370 Query: 420 KNAIYRALTQLDGYELRPQDI--LLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLY 477 +N I R + +G E+ DI LLP + + V + + + DE S + +L L Sbjct: 371 RNFIERLIVLHEGSEIYESDILKLLPQAKSFSEPVSQTTLSLT-DERESLEKTRILQTLQ 429 Query: 478 RNYPSTRKLAKRLGVSHTAIANKLREYGLSQKKNE 512 + Y + AK+LG+S + K+++Y ++ K + Sbjct: 430 QTYGNKSITAKKLGMSRANLYKKIKKYRITFDKAD 464 >UniRef50_A1HRK7 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRK7_9FIRM Length = 575 Score = 514 bits (1325), Expect = e-144, Method: Composition-based stats. Identities = 146/464 (31%), Positives = 225/464 (48%), Gaps = 35/464 (7%) Query: 72 WMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLING 131 W R+ L+A+ + + E + VD KV + N + QL+G + + H + + Sbjct: 115 WEQFRRQQAVLTAVADIVGEALTVVDTSGKVSLWNKRAEQLYGIAPEMILGHPIEEFFSN 174 Query: 132 FNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIR---- 187 L S S H G + L+ P+ + G++ R Sbjct: 175 LIITAVLASSQAISDKYHQPKPGAHVLINAAPICCDGS-----IIGSIAAERDITEIVNL 229 Query: 188 -------------MGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITG 234 + R+++ + AQ F+ I + ++ + A+K+A+ S P+LI G Sbjct: 230 TQQLCATNAKVMSLKREIKEINAQP-DPFAAICGHNTVLRQEIATARKIAISSVPVLIRG 288 Query: 235 DTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGF 286 ++GTGK++FA A H AS R P++ +NC +IP ESE FG+ +GK G Sbjct: 289 ESGTGKEVFARAIHTASRRR-GPFVVVNCGAIPPTLFESEFFGYQPGAFTGADKKGKPGL 347 Query: 287 FEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVEL 346 FE A+GG++ LDEIGE+ MQ KLLR L D +F RVG D V VDVR+I AT +NL + Sbjct: 348 FELAHGGTLFLDEIGELPKEMQVKLLRVLQDKSFYRVGGDRPVQVDVRIIAATHRNLEAM 407 Query: 347 VQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTV 406 +++ FR DLYYRLNV++L LPPLR DI L + +FA G K+ ++ V Sbjct: 408 IEQQEFRHDLYYRLNVVSLYLPPLRQRRDDIPELVHRGIQQFASLHGREIVKVEPEVMAV 467 Query: 407 LTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDIL--LPDYDAATVAVGEDAMEGSLDEI 464 Y WPGNVR+L N + R + DG L+ D+ L + +L Sbjct: 468 FLEYDWPGNVRELYNVLERLVILADGGVLKFADLPADLQQFGLLLPKKINLTAAQNLPAA 527 Query: 465 TSRFERSVLTQLYRNYP-STRKLAKRLGVSHTAIANKLREYGLS 507 T R ER+++ Q + AK+LG+ + + K++ GL+ Sbjct: 528 TERMERTIIMQALAAAGFRKAQAAKKLGIPRSTLYYKMQRLGLN 571 >UniRef50_C0GRG2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GRG2_9DELT Length = 464 Score = 513 bits (1323), Expect = e-144, Method: Composition-based stats. Identities = 136/460 (29%), Positives = 240/460 (52%), Gaps = 21/460 (4%) Query: 73 MPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQL---- 128 + ++R ++ ++E + E +L V + M N A + G + L + Sbjct: 2 LKNQRVNIYCKDIVEIMQEGLLVVAEDGTIQMVNHALENITGYSKEELLGQPCSIFKCDA 61 Query: 129 ------INGFNFLRWLESEPQDSHNEHVVINGQNFL--MEITPVYLQDENDQHVLTGAVV 180 + + R E + Q H++ +++ ++ V D+ V Sbjct: 62 CKLLRQASSGAWCRLFERKEQVKRKCHLMRKDGSYITVLKTAAVLSDDQGQTMGAVEIVT 121 Query: 181 MLRSTIRMGRQLQNVAAQ--DVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGT 238 + R+ RQL+ + + S+F IV S +MK++ E +K A P+ I G++GT Sbjct: 122 DISEMDRLDRQLRQLTRTLDEESSFQGIVGHSRQMKNLFELVEKAAQSDFPVFICGESGT 181 Query: 239 GKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQAN 291 GK+L A A H SPRA +PY+ +NCA++ E +ESELFGH A + +KG FE A+ Sbjct: 182 GKELVAQAIHNLSPRAEQPYIQVNCAALNESLLESELFGHVKGAFTGALQHRKGRFEAAH 241 Query: 292 GGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGM 351 G + LDEIG++ MQ KLLR L TF RVG++ + VD+R I AT KNL +L+ +G Sbjct: 242 KGDIFLDEIGDLPMAMQVKLLRVLETKTFERVGDNRTISVDLRFITATNKNLPDLIARGG 301 Query: 352 FREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYA 411 FREDL+YR+NV+ ++LPPLR+ +D+ L + F+ R + + L+ + + +Y+ Sbjct: 302 FREDLFYRINVIPIHLPPLRERKEDVPHLVDFFIKRLSRKNKKNIQGLSPEAMRIFMQYS 361 Query: 412 WPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERS 471 WPGNVR+LK+A+ + +G +R +++ D D + + R ++ Sbjct: 362 WPGNVRELKSALEYSYVLAEGDRIRSENLPEYLKDGGNDFQAVDLPPAPAENLQQRQKQE 421 Query: 472 VLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKKN 511 ++ L ++ + + A+ LG++ + N++R+YG+ +++ Sbjct: 422 LIEALKQSSGNKSQAARLLGINRVTVLNRMRKYGIDLQRD 461 >UniRef50_B8FXH0 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FXH0_DESHD Length = 703 Score = 513 bits (1323), Expect = e-144, Method: Composition-based stats. Identities = 133/469 (28%), Positives = 231/469 (49%), Gaps = 29/469 (6%) Query: 63 GVTDVRTVP--WMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRL 120 +T++ V +E+ L A++E E ++ +D + + + N + G K+ + Sbjct: 239 DITELEEVSHRLNSNEKLMATLEAVVENSYEGMVVIDDQENIVLMNQFFLDVIGVKVQDV 298 Query: 121 RNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPV-------------YLQ 167 + + + L+S E + G++F++ P+ + Sbjct: 299 IGKKINDISPNSSLPQTLKSGKAQF-GETWHLKGRDFIIMRVPIEREGKVVGALAKTLFK 357 Query: 168 DENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLS 227 + + V+ L + ++ F I+ SP+MK A + + + Sbjct: 358 NMEIAKMFAKKVMRLEENLAYYKEELGKFHSSQFVFDDIIGESPRMKKAKSLAHRASQTT 417 Query: 228 APLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH--------A 279 + +LI G++GTGK++F++A H++S R+ PY+ +NCA++PED +ESELFG+ Sbjct: 418 STILILGESGTGKEVFSHAIHKSSIRSNGPYIKVNCAALPEDLLESELFGYDEGAFTGAR 477 Query: 280 PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICAT 339 GK G FE A+ G++ LDEIG+MS MQAKLLR L + R+G + VDVR+I AT Sbjct: 478 KGGKPGKFELADKGTIFLDEIGDMSLGMQAKLLRVLQERELERLGGTEPIKVDVRIIAAT 537 Query: 340 QKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKL 399 ++L ++V + FR DLYYRLNVLT++LPPLR+ +DI + + + G + Sbjct: 538 NRDLHKMVMEHKFRLDLYYRLNVLTIDLPPLRERKEDIGFIARGLIEKINKRLGTDIQGV 597 Query: 400 AADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEG 459 + T L Y WPGN+R+L+N + RA+ D + P+ + LP + E Sbjct: 598 RPESITHLCAYDWPGNIRELENILERAIVICDEAWILPKHLALP----GVMETITLGAEQ 653 Query: 460 SLDEITSRFERSVLTQLYRN-YPSTRKLAKRLGVSHTAIANKLREYGLS 507 +L+ ER +L + R + + A+ LG+ + + KL +Y + Sbjct: 654 TLEYALQAAEREILDKTLRRVQGNKVQAARILGIHRSVLYKKLAKYNIQ 702 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 17/119 (14%), Positives = 45/119 (37%), Gaps = 6/119 (5%) Query: 82 LSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESE 141 +S +EA+ V+++D + ++ NP++ +L G + + + L + Sbjct: 143 ISQTIEAVHNAVVAIDAQGRIVFFNPSAEKLLGFHAEEVLGKPIKNFFPDSLTFKALATG 202 Query: 142 PQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDV 200 ++ + N + P+ L H + GAV + + + + + + Sbjct: 203 -EELRGIPMSYGELNTKADFLPIIL-----GHKVLGAVAVFKDITELEEVSHRLNSNEK 255 >UniRef50_A1HPH1 Putative PAS/PAC sensor protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HPH1_9FIRM Length = 478 Score = 511 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 148/461 (32%), Positives = 232/461 (50%), Gaps = 38/461 (8%) Query: 80 LALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLI-----NGFNF 134 L A++++ + + D K+ V N A ++ G K + L+ + Sbjct: 25 TELEAIIDSSYDGIFITDGKANVLRLNAAYERITGIKAAEVVGRNMVDLVREGLYDQSVT 84 Query: 135 LRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQN 194 L LE + + ++ V N ++ L+ PV+ + + V +R + R Sbjct: 85 LLVLEQRARVTIDQIVKRNNKHILVTGNPVFDKRGG----IFRVVTNVRDVTDLNRLQNQ 140 Query: 195 VAAQDVSAF----------------SQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGT 238 + I+ S + VVE A K+A + + +LITG++GT Sbjct: 141 LTKTQEETLKYQTELNHLRALHIKDPDIIFRSRAIAAVVELATKVADVDSTVLITGESGT 200 Query: 239 GKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH--------APEGKKGFFEQA 290 GK+LFA H+ +P++ +NC +IPE +ESELFG+ EGK G FE A Sbjct: 201 GKELFAKLIHRHGRGDNRPFIKINCGAIPETLLESELFGYDGGAFTGAKREGKPGLFELA 260 Query: 291 NGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKG 350 +GG++ LDEIGEM P +Q KLLR + + RVG + V+VR+I AT ++L +VQ+G Sbjct: 261 DGGTLFLDEIGEMPPVLQVKLLRVIQEKAVIRVGGVKQKSVNVRIIAATNRDLAHMVQQG 320 Query: 351 MFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRY 410 FREDLYYRL V+ L++PPLR+ +DI L + F+ +F + G + L D+ LT Y Sbjct: 321 TFREDLYYRLMVVPLHIPPLRERKEDIPLLVKHFLDKFNKKFGFNKVIL-PDVIDRLTEY 379 Query: 411 AWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFER 470 +WPGNVRQL+N I R + G E+ +LP A + + + + L E + E+ Sbjct: 380 SWPGNVRQLENIIERLVVTTPGNEITAD--MLPQQVNARIPLPKTGTK--LKEAVAATEK 435 Query: 471 SVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKKN 511 +LT+ +R Y + K+A LG+ T K +YGL KK Sbjct: 436 YLLTETFRQYGNWNKVADVLGIDRTTACRKAVKYGLISKKQ 476 >UniRef50_A5D421 Transcriptional regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D421_PELTS Length = 597 Score = 511 bits (1316), Expect = e-143, Method: Composition-based stats. Identities = 140/476 (29%), Positives = 234/476 (49%), Gaps = 19/476 (3%) Query: 52 SSLMAEIRRIAGVTDVRTVPW-MPSERE--HLALSALLEALPEPVLSVDMKSKVDMANPA 108 SL+ I R+A + + V + +ER L A+++A+ E V++VD + N + Sbjct: 124 DSLIEFIGRMADLISSKVVEQEIMAERTVLANRLEAVVDAVGEGVMAVDRDGCITHFNRS 183 Query: 109 SCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVV-INGQNFLMEITPVYLQ 167 + ++FG K +++ + L L+ + E + G+ + T ++ Sbjct: 184 AERIFGAKKEQVIGKDSKILFPSLPLSSVLQDGIGFNSKEVFINYEGRKLHLLSTAKPIK 243 Query: 168 DENDQHVLTGAVVMLRSTIRMGRQLQNVA-AQDVSAFSQIVAVSPKMKHVVEQAQKLAML 226 +N Q + G V + + + ++ F IV S + V +A+K++ Sbjct: 244 VKNGQ--VAGVVASFQDFKETQKLAYEIMNTHEMIGFDDIVGASKPLLEVKAKAKKISAS 301 Query: 227 SAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE----- 281 ++ +LI G++GTGK++FA A H A P KP++A+NC ++PE+ +E ELFG+ Sbjct: 302 NSNVLIVGESGTGKEIFARAIHSAGPYGHKPFVAINCGAMPENLLEIELFGYVEGAFSGA 361 Query: 282 ---GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICA 338 GK G FE ANGG++ LDE+G MS +Q KLLR L + RVG V V++R+I A Sbjct: 362 RRGGKPGKFELANGGTIFLDEVGNMSLYLQTKLLRVLKERVIERVGGTRPVPVEIRIIAA 421 Query: 339 TQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPK 398 T +L E VQK +FR+DLYY L+V+ L +PPLR +DI L + ++ RF G Sbjct: 422 TNSDLQEKVQKNLFRDDLYYLLSVIPLVIPPLRTRQEDIPLLLDFYMKRFNRLLGKDIKG 481 Query: 399 LAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAME 458 + +Y WPGNVR+L A+ A+ + + P+ + + A + Sbjct: 482 FTDEAMEACIKYPWPGNVRELVYAVEYAVNLEEEPLISPESLPPAIREGARKRTRDGIAG 541 Query: 459 GSLDEITSRFERSVLTQLYRNYP----STRKLAKRLGVSHTAIANKLREYGLSQKK 510 G ++ E+ +T Y K A+ LG+S I K++++ LS K Sbjct: 542 GGQLLQLAQLEKEAITAALEQYGWSDEGKTKAARALGISRATIYRKIQKFKLSPPK 597 >UniRef50_C9RXL1 GAF modulated sigma54 specific transcriptional regulator, Fis family n=6 Tax=Geobacillus RepID=C9RXL1_GEOSY Length = 643 Score = 509 bits (1313), Expect = e-143, Method: Composition-based stats. Identities = 135/479 (28%), Positives = 239/479 (49%), Gaps = 27/479 (5%) Query: 43 FAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKV 102 + ++ + +++ ++ I + + L A + E +L +D K+ Sbjct: 175 YEKVHSHTLGMVVSAVKAIEYQLKLHE-NAEKNVMMQRFLEATTNNMKEGILIIDRDGKI 233 Query: 103 DMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQ------N 156 AN +LF +L L N + + P N+ + ++ + + Sbjct: 234 VKANNQLKKLFRIPQLQLEEKKLDDLFNDPSIC---SNHPLHLQNQELHLSVKPSNAVHH 290 Query: 157 FLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAA-QDVSAFSQIVAVSPKMKH 215 L++ P+Y + E G++++++ ++ + + +++ Q F+ ++ P Sbjct: 291 VLVDKIPIYEKKER-----IGSMIIVKEIEKVRQFVNHLSGNQAKITFADMIGQHPCFIE 345 Query: 216 VVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESEL 275 + +A+ A + +LI G++GTGK++ A A H S R KP++A+NC IP D + SEL Sbjct: 346 KMNEARLAAATDSNVLILGESGTGKEMVAQAIHNESKRRNKPFIAINCGGIPRDLLGSEL 405 Query: 276 FGH--------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDH 327 FG+ G G FE ANGG++ LDEIGEMS MQ LLR + + R+G Sbjct: 406 FGYVDGAFTGAKKGGSAGKFELANGGTLFLDEIGEMSLEMQVLLLRVIQEKEVMRIGGHK 465 Query: 328 EVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVAR 387 + VDVR+I AT K+L VQKG FREDL++RLNV+ + LPPLR+ +DI L F+ R Sbjct: 466 VIPVDVRIIAATNKDLRREVQKGSFREDLFFRLNVMPIVLPPLRERKEDIPLLVRHFIER 525 Query: 388 FADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDA 447 A ++ P P++ +D L +Y WPGN+R+L+N I R L Q L D+ + Sbjct: 526 LAHKRDKPFPEIRSDFLEALMQYDWPGNIRELQNMIERVLNQCTKPVLTAADLPEEIFQP 585 Query: 448 ATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 + + + ++ S +EI + S++ L + + K A+ LG+S + ++ ++ + Sbjct: 586 SCSSQVRENVDISRNEIKKQ---SIIEALKQCNGNISKAARYLGISRSTFYRQMDKWNI 641 >UniRef50_C8W252 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W252_DESAS Length = 591 Score = 508 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 136/472 (28%), Positives = 228/472 (48%), Gaps = 37/472 (7%) Query: 65 TDVRTVPWMPSERE-----HLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDR 119 D+ + + +E L +++ + L V+ + V N A +L + Sbjct: 127 QDITELQQIANELNSVNEMKSTLETIIDTGHDGYLVVNKEGYVITLNKAYAELIDINPED 186 Query: 120 LRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAV 179 ++I L + + E + + G+ ++ P+ N + GAV Sbjct: 187 AIGRHIKEVIPETE-LHLVSQTGKTQIGEVLRVKGREAVVMRYPI-----NKDGRIIGAV 240 Query: 180 --VMLRSTIRM----------GRQLQ---NVAAQDVSAFSQIVAVSPKMKHVVEQAQKLA 224 VM R + R+++ A ++ S M + E +++A Sbjct: 241 SKVMFRDVNQFITSAKTVYSSQRRIKGEPEQWASARYTVDNLIGKSHPMLRLKETVRRVA 300 Query: 225 MLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH------ 278 + + +LI G++GTGK+L A++ H S R P++ +NCA++PE+ +ESELFG+ Sbjct: 301 LGPSTVLIRGESGTGKELLAHSLHVGSNRCLGPFVKVNCAAVPENLLESELFGYVEGAFT 360 Query: 279 --APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVI 336 G+ G FEQANGG++ LDEIG+M MQAKLLR L + R+G++ HV+VRV+ Sbjct: 361 GAKKGGQIGKFEQANGGTIFLDEIGDMPLLMQAKLLRVLQEKEIERLGDNRARHVEVRVV 420 Query: 337 CATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPR 396 AT + L +++ FREDLYYRLNV+TL +P LR+ D+ L E F+A++ G+ Sbjct: 421 AATNRPLEQMIADNTFREDLYYRLNVVTLQIPSLRERIDDLKDLVEYFLAKYNHAFGLNI 480 Query: 397 PKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDA 456 L+AD + Y WPGNVR+L+N + RA +DG+ + LP Y + Sbjct: 481 TGLSADALELFENYNWPGNVRELENVVERAFNLVDGHIIDVMH--LPPYLQKFGKSKRHS 538 Query: 457 MEGSLDEITSRFERSVLTQLYR-NYPSTRKLAKRLGVSHTAIANKLREYGLS 507 + SL + + E+ + + + AK LG+S + K+ +YG+ Sbjct: 539 INKSLPSLLEQVEKEAIADALSVTNGNKMQAAKILGISRAWLYKKIAQYGIK 590 Score = 65.5 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 52/125 (41%), Gaps = 8/125 (6%) Query: 85 LLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQD 144 +L A+ V++VD K+ + N +LF ++ ++++ L+ L++ Sbjct: 35 VLNAIYNVVIAVDYSGKIIVYNHGCERLFKVPAEKAMGRFVSEVVPMTGLLKVLKTGNSH 94 Query: 145 SHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAA--QDVSA 202 + V N +++ TP+ ++ + GAV + + + + + + + S Sbjct: 95 IGRKFVQGNSL-YIVNRTPILHDNK-----VVGAVGVAQDITELQQIANELNSVNEMKST 148 Query: 203 FSQIV 207 I+ Sbjct: 149 LETII 153 >UniRef50_C0Z5U4 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z5U4_BREBN Length = 548 Score = 508 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 129/475 (27%), Positives = 223/475 (46%), Gaps = 52/475 (10%) Query: 82 LSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLI--NGFNFLRWLE 139 L L++ + E V VD ++ V N A+ ++ ++ + + L L Sbjct: 74 LRTLMDTMSEAVTIVDSRNVVQHWNRAAETIYEIDRAQVVGTSLDEHFASESIRLLDALR 133 Query: 140 SEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVA--- 196 H+ + L+ P+ + + GA+ + + + R + +A Sbjct: 134 QGTSVQRVYHIPRPDSHVLINAAPI-----RREGEIIGAISIEQDITELVRLNEELAHTT 188 Query: 197 -------------AQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLF 243 F I S ++ + A+K+A A +LI G++G GK+LF Sbjct: 189 AHLHNLQQEMSRFQAADDPFYAIKGHSASIQSAIGSAKKVAQTDATVLIYGESGVGKELF 248 Query: 244 AYACHQASPRAGKPYLALNCASIPEDAVESELFGH--------APEGKKGFFEQANGGSV 295 A A HQAS R KP++A+NC +IP ESELFG+ +GK G E A+GG++ Sbjct: 249 AQAIHQASRRHEKPFIAINCGAIPAALFESELFGYQGGAFTGAEKKGKPGKLELAHGGTL 308 Query: 296 LLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFRED 355 LDEIGE+ +Q KLLR L + F RVG + V+ R++ AT + L ++V G FRED Sbjct: 309 FLDEIGELPLELQVKLLRALQERQFYRVGGTEPITVNTRIVAATNRQLEQMVADGRFRED 368 Query: 356 LYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGN 415 LYYRLNV +L +PPLR+ +D+ L ++F+ ++ P+++ ++ L Y WPGN Sbjct: 369 LYYRLNVFSLEIPPLRERREDLPELVQIFIHEYSVAHDQSVPRISPEVMQALFEYTWPGN 428 Query: 416 VRQLKNAIYRALTQLDGYELRPQDILL-------PDYDAATVAVG--------------E 454 +RQL+N I R + + P+ + P + + +G Sbjct: 429 IRQLRNVIERLSILQENGVILPEHLPSVIRSHTEPTHVSLHTPMGGTYAPPTTTPPPIIR 488 Query: 455 DAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQK 509 ++ + + + +L L R Y + + A+ LGVS + NK++++ ++++ Sbjct: 489 PSIAIAYPSSPANEKERILAALERTYGNKKAAAELLGVSRGTLYNKMKKFNINEE 543 >UniRef50_A4J599 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J599_DESRM Length = 575 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 148/503 (29%), Positives = 241/503 (47%), Gaps = 40/503 (7%) Query: 42 NFAELEFESFS----SLMAEIR-----------RIAGVTDVRTV---PWMPSEREHLALS 83 +F+ L+ E + + E+R I GV V + ++ Sbjct: 74 DFSSLDEEDLEREILAFLPELRYHALVCRNNQGDILGVLSYDQVFHDLALRVCETEARIN 133 Query: 84 ALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQ 143 A++E + E V VD V N + +L+G K + R + + Sbjct: 134 AVVETVDEAVCIVDNNDMVTSWNSRAEELYGIKAQDIIGKPICSFFTNLVVTRVNKEWQE 193 Query: 144 DSHNEHVVINGQNFLMEITPVYLQDENDQHV-----LTGAVVMLRSTIRMGRQLQNVAAQ 198 H + G + L+ TPV L + V +T V + + + Q+Q + + Sbjct: 194 IRSLHHQPVPGTHVLINATPVRLGPKVIGGVTAERDVTEIVQLNQKLNQASSQVQRLEKE 253 Query: 199 ------DVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASP 252 D + F+ + ++ ++ A+K A+ SA +L+ G++GTGK+LFA A H+ASP Sbjct: 254 IDKFSTDRNPFAAVKGHHKRLTELINVARKAALTSAVVLLRGESGTGKELFAKAIHEASP 313 Query: 253 RAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGEMS 304 R K + +NCA+IP ESE+FG+ +GK G FE A+GG++ LDEI E+ Sbjct: 314 RIDKKFCVINCAAIPPSLFESEMFGYESGAFTGADKKGKIGVFEMADGGTLFLDEISELP 373 Query: 305 PRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLT 364 MQ KLLR L DG F R+G + VDVR+I AT ++L +++ G FREDLYYRLNV++ Sbjct: 374 LDMQVKLLRVLQDGVFFRIGGSTPIKVDVRIIAATNRSLEDMMAHGTFREDLYYRLNVVS 433 Query: 365 LNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIY 424 L +PPLR+ +DI L LF+ F+ KL + Y+WPGN+RQLKN I Sbjct: 434 LEIPPLRERREDIPELVYLFLQEFSQLYNKQISKLEPGVMATFLAYSWPGNIRQLKNIIE 493 Query: 425 RALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRN-YPST 483 R + +G + I P+ + + L +T + ER ++ + + + Sbjct: 494 RMVILTEGDTVLESAI--PESLKLSSRQDQATATIGLASVTEQTERELIIRTLKQVNGNR 551 Query: 484 RKLAKRLGVSHTAIANKLREYGL 506 + A+ LG+ + + K+ + G+ Sbjct: 552 SEAARMLGIPRSTLYYKMHQLGI 574 >UniRef50_Q897M6 Transcriptional regulatory protein n=1 Tax=Clostridium tetani RepID=Q897M6_CLOTE Length = 567 Score = 508 bits (1308), Expect = e-142, Method: Composition-based stats. Identities = 140/472 (29%), Positives = 237/472 (50%), Gaps = 35/472 (7%) Query: 62 AGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLR 121 A V DV E+ LS +LE + ++ +D + M N G +R Sbjct: 104 ANVIDVMYEELKAKEKNLKILSFILELAYDGLVVIDKYGYITMINKTYADFLGVDQERSI 163 Query: 122 NHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVM 181 ++I ++ ++ + + G+ + PV EN + V V+ Sbjct: 164 GKHVTEVIESTRMHIVAKTGIAET-AQLQKVKGKYMIANRIPVI---ENGELVAVAGKVL 219 Query: 182 LRSTIRMG------RQLQNVAAQ----------DVSAFSQIVAVSPKMKHVVEQAQKLAM 225 ++ + R ++N + +F I+ S K+ + A+K A Sbjct: 220 FKNIKELDLLYKKIRNIENEYKKYKGQFDESNSASYSFDNIIGKSDKINKTKDLAKKAAK 279 Query: 226 LSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA------ 279 ++ +LI G++GTGK+LFA+A H S R ++ LNCA+IP D +ESELFG+ Sbjct: 280 TNSNVLIRGESGTGKELFAHAIHMESERVYGNFIKLNCAAIPRDLLESELFGYEGGAFTG 339 Query: 280 --PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVIC 337 EGK G FE A+GG++ LDEIG+M MQAKLLR L + R+G +DVRVI Sbjct: 340 AKKEGKIGKFELADGGTIFLDEIGDMPLHMQAKLLRVLQEREVERIGATRSKKIDVRVIS 399 Query: 338 ATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRP 397 AT ++L +++++G FREDLYYRLNV+T+N+PPLR+ +DI L+E + + + + G Sbjct: 400 ATNRDLEKMIKEGEFREDLYYRLNVVTVNIPPLRERREDIKILSEYLLEKISKKLGKKTK 459 Query: 398 KLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYE-LRPQDILLPDYDAATVAVGEDA 456 + + + L Y W G VRQL+N I RA+ ++ E + P+ P + + ED+ Sbjct: 460 SFSKEAMSCLMNYKWEGGVRQLENIIERAVNLVEHNEMIEPKHF--PGNIVSNKYIVEDS 517 Query: 457 MEGSLDEITSRFERSVL-TQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 L+++ ++ E+ ++ L + AK+L +S T++ K+ ++ ++ Sbjct: 518 ---DLNKLINQVEKDIILETLIYCNWNKTLAAKKLNISRTSLYEKIAKHNIA 566 >UniRef50_Q0SQI9 Phosphocarrier HPr/sensory box protein/sigma-54 dependent transcriptional regulator n=21 Tax=Clostridium RepID=Q0SQI9_CLOPS Length = 668 Score = 506 bits (1305), Expect = e-142, Method: Composition-based stats. Identities = 145/473 (30%), Positives = 232/473 (49%), Gaps = 26/473 (5%) Query: 58 IRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKL 117 I I+ + DV + M + + +LE + + VD ++ NPA + F + Sbjct: 202 IGAISVIQDVSDIIGMK--EINEKFTKILENSQDMICFVDENGIINYLNPAYIKNFSKVS 259 Query: 118 DRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTG 177 + + + + + + H NG N + I P+++ + + T Sbjct: 260 SDVIGKSIFDIAPNGLRAKVFKEKTLLKDVIH-KKNGINVISTIDPLFIDGQFKGVISTS 318 Query: 178 AVVML---------RSTIRMGRQLQNVAAQ--DVSAFSQIVAVSPKMKHVVEQAQKLAML 226 V L +S + Q S+F+ I+ + +K ++ QK + Sbjct: 319 RPVSLIKELMSKLNKSEQELDYYKNEFLRQLSKNSSFNNIIGSTRTLKDIMYMCQKASET 378 Query: 227 SAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH-------A 279 ++ +LI G++GTGK+L A A H S R KP++ +NCASIPE+ +ESELFG+ A Sbjct: 379 TSTVLIRGESGTGKELIAKAIHNNSNRKNKPFVRVNCASIPENLLESELFGYEKGAFTGA 438 Query: 280 PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICAT 339 + K G F A+ G++ LDEIG+M MQ KLLR L + VG ++DVRVI AT Sbjct: 439 VQSKPGKFAIADTGTIFLDEIGDMPLSMQVKLLRVLQEREIESVGGITPKNIDVRVIAAT 498 Query: 340 QKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKL 399 +NL E+++ G FREDLYYRLNVL +NLPPLR+ +DI L E F+ + + + Sbjct: 499 NRNLEEMIEDGSFREDLYYRLNVLGINLPPLRERKEDIPELAEHFITKLNKKLHKTILGI 558 Query: 400 AADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEG 459 D +L Y+WPGN+R+L+N + RA+ DG + LP Y V + Sbjct: 559 KQDALNLLIEYSWPGNIRELENIMERAINLCDGDYIDSS--YLPSYLK-PVESKSFNLNI 615 Query: 460 SLDEIT--SRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKK 510 +D I +E+ ++ + Y S K K LG++H ++ K ++Y + KK Sbjct: 616 DIDHILPFEEYEKQIIEAAMKKYKSFNKAGKALGLTHRTVSLKCKKYNIEVKK 668 Score = 64.7 bits (157), Expect = 8e-09, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 54/131 (41%), Gaps = 11/131 (8%) Query: 83 SALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEP 142 +LE+LP ++ +D+ + N + + G ++ ++I + S Sbjct: 115 EQVLESLPIGIVVIDIDQNIITINQYALRFIGCNKKDVKGKKINEVIPSSQLPHVMLSNL 174 Query: 143 QDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSA 202 + + + IN + L+ +P+++ D+ + GA+ +++ + + Sbjct: 175 KK-YGSTLHINNRVGLVNSSPLFINDK-----IIGAISVIQDVSDII-----GMKEINEK 223 Query: 203 FSQIVAVSPKM 213 F++I+ S M Sbjct: 224 FTKILENSQDM 234 >UniRef50_A5I3D4 Putative sigma-54 dependent transcriptional regulator n=10 Tax=Clostridium RepID=A5I3D4_CLOBH Length = 591 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 135/503 (26%), Positives = 254/503 (50%), Gaps = 28/503 (5%) Query: 20 LLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRR--IAGVTDVRTVPWMPSER 77 ++ I + GI I + LN EF+S + + + + + T+ + + Sbjct: 103 IMEDEVIGVIGINIFNEKQ--LNMISKEFDSMITFLNRLSTLLVGNIIYYDTIKKLQIQT 160 Query: 78 EHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRW 137 E + ++++L ++ VD + N +L K L N I+ FN Sbjct: 161 EET--NHIIDSLSHGIMCVDNNGILKYINHKGKKLLDIKEKSLVNTNIKDTISNFNIK-- 216 Query: 138 LESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAA 197 L S+ + ++FL++ +P+ + E ++ + + + + A+ Sbjct: 217 LLSKEYKGKRISIHGKNESFLIKSSPIIFKGER----VSNIIEFNKKIDEVQAAYKLFAS 272 Query: 198 QDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKP 257 + F I+ S +K+V A+ +A + +L+ G++GTGK+LFA A H S R P Sbjct: 273 SKIIKFEDIMGSSNNIKNVKLIAKNIAKTDSTVLLRGESGTGKELFARAIHFESQRCDAP 332 Query: 258 YLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQA 309 ++A+NCASIP++ +ESE FG+ EG+ G FE ANGG++ LDEIG++ +Q Sbjct: 333 FIAVNCASIPDNLLESEFFGYEGGAFSGAKREGQMGKFELANGGTIFLDEIGDLPLHLQP 392 Query: 310 KLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPP 369 K+LR L + +F ++G E+ VDVR+I AT ++L +V+ G FR+DLYYRLNV+ + LP Sbjct: 393 KILRVLQEQSFTKIGGKEEICVDVRIIAATNRDLEAMVKHGQFRQDLYYRLNVIPIYLPS 452 Query: 370 LRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQ 429 L+D +DI+ L+E + +F + + +L+ ++ +Y+WPGN+R+L+N I + Sbjct: 453 LKDRGEDIILLSEYLMDKFCERSNLKIKQLSKEVKDSFKKYSWPGNIRELENVIEYIVNT 512 Query: 430 LDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYP----STRK 485 + + + + ++ ++ SL + ++E+++L + Y + Sbjct: 513 TKENIIYNEHLP----KSFKISKEDEKSNKSLQDRLYKYEKNLLISMMEEYGEDGKGKER 568 Query: 486 LAKRLGVSHTAIANKLREYGLSQ 508 +AK L ++ + + KL +Y L + Sbjct: 569 IAKELDINLSTLYRKLNKYNLQK 591 >UniRef50_A1HNH8 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Clostridiales RepID=A1HNH8_9FIRM Length = 637 Score = 504 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 148/497 (29%), Positives = 251/497 (50%), Gaps = 34/497 (6%) Query: 28 LRGIEIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLE 87 + +I + F E E+ + E +R+A VR SE +L+ Sbjct: 151 VMSTQIAERLGLKTVFIETGREAIYHALREAKRVA---RVRRQEQERSE----QFRTILD 203 Query: 88 ALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHN 147 E +++VD +++ N A+ ++ G + + +L+ R L S + Sbjct: 204 YSTEGIITVDAAGAINLVNAAAMKITGLSGEAV-GLAVDKLLPQLGLSRVLASGRAEL-G 261 Query: 148 EHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTI-------RMGRQLQNVAAQDV 200 E +NGQ + P+ ++ + GAV + ++ +++ Sbjct: 262 EVETVNGQQVAVNRVPIIIRGQA-----VGAVATFQPVADIQALEGKIRQKIYKRGLVAR 316 Query: 201 SAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLA 260 F I+ SP ++ + A++ + +++ +LITG+TGTGK++FA + H AS R P++A Sbjct: 317 LTFDDILGDSPAIRQTIAIAREFSKVNSNVLITGETGTGKEIFAQSIHNASSRRKGPFVA 376 Query: 261 LNCASIPEDAVESELFGHAPE--------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLL 312 +NCA++PE+ +ESELFG+A GK G FE A+GG++ LDEI E+SP++Q +LL Sbjct: 377 VNCAALPENLLESELFGYAEGAFTGAARGGKMGLFELAHGGTIFLDEISEISPKLQGRLL 436 Query: 313 RFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRD 372 R L + R+G+D + VDVR+I AT ++L +++Q G+FR+DLYYR++VL L LPPLR+ Sbjct: 437 RVLQEREIMRLGDDRVIPVDVRIIAATNRDLYQMMQAGLFRQDLYYRVDVLKLVLPPLRE 496 Query: 373 CPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDG 432 +DI+PL + F+ + P ++ D +L RY WPGNVR+L+N R G Sbjct: 497 RQEDIIPLMQHFLKLYCLRSNRPVKEIGPDAQAMLRRYHWPGNVRELRNIAERLAVLASG 556 Query: 433 YELRPQDI--LLPDYDAATVAVGEDAMEGSLDEITSRF---ERSVLTQLYRNYPSTRKLA 487 + +DI +L A+ E A + + +L L + A Sbjct: 557 PVIGARDIAAVLTGETGRRKAINETAEPAAALAGANDVDLNRAILLKALEEADYHYGRAA 616 Query: 488 KRLGVSHTAIANKLREY 504 RLG+S T + +L++Y Sbjct: 617 ARLGISRTTLWRRLKQY 633 >UniRef50_B0K647 Sigma54 specific transcriptional regulator, Fis family n=12 Tax=Firmicutes RepID=B0K647_THEPX Length = 544 Score = 504 bits (1299), Expect = e-141, Method: Composition-based stats. Identities = 142/441 (32%), Positives = 220/441 (49%), Gaps = 22/441 (4%) Query: 83 SALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEP 142 + ++ ++ D + + N A+ + G +D+ ++++ L++ Sbjct: 112 EKIFNSIGSGLIVTDENGAIMIFNKAAESITGINMDQAIGKKIQEVMSDIKIADVLKTGK 171 Query: 143 QDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDV-- 200 ++ N+ + I L ITP+Y + GAV++ ++ + Sbjct: 172 EE-MNKKLKIGTNVVLTNITPIY-----TGTKIEGAVIVFYDFPQIEYLENELKRDRKLD 225 Query: 201 SAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLA 260 AF I+ S K+K + A K A + +LI G++GTGK+L A A H AS R KP++ Sbjct: 226 KAFDIIIGNSGKLKDALTIASKAAETDSTVLIRGESGTGKELVANAIHYASKRKDKPFIR 285 Query: 261 LNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLR 313 +NCA+IP +ESELFGH A K G FE A+GG++ LDEIG++ P +Q KLLR Sbjct: 286 VNCAAIPVTLLESELFGHERGAFTGAVTQKIGKFELADGGTIFLDEIGDIPPEIQVKLLR 345 Query: 314 FLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDC 373 + + F RVG + VDVR+I AT K+L + +++G FREDLYYRLNV+ + LPPLR+ Sbjct: 346 VIQEKEFERVGGIKTIKVDVRIIAATNKDLEKAIKEGTFREDLYYRLNVIPVILPPLRER 405 Query: 374 PQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGY 433 DI L E F+ + + K+ L Y WPGN+R+L+N I R +T D Sbjct: 406 RGDIPLLVEHFIEKLNKKLNKNVKKVTKKAMQALIYYDWPGNIRELENIIERCITLSDTD 465 Query: 434 ELRPQDILLPDYDAATVAVGEDAMEGSLDE-----ITSRFERSVLTQLYRNYPSTRKLAK 488 + +D LP Y D L E +E ++ + Y S K K Sbjct: 466 YIDYED--LPQYIRNETTTVSDDDIIYLGENSELLTMEEYEYKIIKAAIQRYKSFNKAGK 523 Query: 489 RLGVSHTAIANKLREYGLSQK 509 LG++H IA K R++GL + Sbjct: 524 VLGLTHKTIAAKARKFGLVDR 544 >UniRef50_Q2RKJ6 Sigma54 specific transcriptional regulator with PAS sensor, Fis family n=2 Tax=Bacteria RepID=Q2RKJ6_MOOTA Length = 636 Score = 504 bits (1299), Expect = e-141, Method: Composition-based stats. Identities = 149/473 (31%), Positives = 237/473 (50%), Gaps = 33/473 (6%) Query: 49 ESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPA 108 E+ S + E R +A V A+L+ E +++ D + ++ + NPA Sbjct: 169 EAISQAIREAREVAMVRRRERAR-------AEQFKAILDFAYEGIVATDQEGRITLVNPA 221 Query: 109 SCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQD 168 + ++ G R+ A +++ G + L+S + H I PV Sbjct: 222 AEKILGLAAHRVVGRPAREVLPGVPLNQVLQSGQKRLGELH-RAGNTLVAENIIPVIAGR 280 Query: 169 ENDQHVLTGAVVMLRSTIRM-------GRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQ 221 E GAV + + ++L F IV SP M ++E+A+ Sbjct: 281 ET-----VGAVATFQDVSHLQAVEARARQELYLKGHVARYTFEDIVTQSPVMAKIIERAR 335 Query: 222 KLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA-- 279 + A A +LI G+TGTGK++ A + H AS R P++A+NCA++PE+ +ESELFG+ Sbjct: 336 QFAAAEATVLINGETGTGKEMVAQSIHNASRRRNGPFVAVNCAAVPENLLESELFGYEEG 395 Query: 280 ------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDV 333 GKKG FE A+GG++ LDEIGE+S +QA+LLR L RVG D + VDV Sbjct: 396 AFTGARKGGKKGLFELAHGGTLFLDEIGELSLNLQARLLRVLQQKAIMRVGGDRVLPVDV 455 Query: 334 RVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQG 393 R+I AT +NL + + + FR DLYYRLNVL +NLPPLR+ P+D+ L + V + + G Sbjct: 456 RIIAATHRNLKDAIARDAFRRDLYYRLNVLQINLPPLRERPEDLPLLIKALVEKISRRAG 515 Query: 394 VPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDI--LLPDYDAATVA 451 P + ++ + Y+WPGNVR+L+N + R + G E+ D+ +L + Sbjct: 516 RLPPIFSEEIIARMQAYSWPGNVRELENILERLVVLRSGEEVEAGDLDEILEPAENQPQP 575 Query: 452 VGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREY 504 V + A+ G+L E+ R L + + +RLG+S T + +L+ + Sbjct: 576 VLQLALRGTLAEMEGEIIRRTLAL---TGNNKEETCRRLGLSKTTLWRRLKSW 625 >UniRef50_B8FIT8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FIT8_DESAA Length = 588 Score = 504 bits (1298), Expect = e-141, Method: Composition-based stats. Identities = 150/466 (32%), Positives = 235/466 (50%), Gaps = 29/466 (6%) Query: 61 IAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRL 120 + VTD R M + L A+ ++ + +++VD KV AN A+ L G + Sbjct: 131 MRDVTDRRKAE-MELAKHKTRLEAIFRSVKDAIVTVDQDLKVIDANKAAATLCGIAAKNV 189 Query: 121 RNHTAAQLING------FNFLRWLESEPQDSHNE----HVVINGQNFLMEITPVYLQDEN 170 +N+ A L+ + + H Q + P+ QD Sbjct: 190 KNNPFALCPTDCCQACRDVLAETLKRKTAIREFQVECNHKQRPQQKVSLSSAPLESQDGE 249 Query: 171 DQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPL 230 GAV+++R R+ + + Q+ + F I+ S KM+ V + + LA + Sbjct: 250 ----FLGAVLVIRDITRLVDLEREL--QERNQFHNIIGASHKMQAVYQLLENLADFETTV 303 Query: 231 LITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH-------APEGK 283 LITG++GTGK+L A A H RA KP++++NC+++ E+ +ESELFGH A Sbjct: 304 LITGESGTGKELVAKALHHTGSRAFKPFVSVNCSALAENLLESELFGHVKGAFTGAIRDY 363 Query: 284 KGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNL 343 +G F+ A+ G++LLDEIG++SPR+Q KLLR L + F RVG+ + VDVRVI T ++L Sbjct: 364 QGRFQAAHTGTLLLDEIGDISPRIQLKLLRVLQEREFERVGDVQPIKVDVRVIACTNQDL 423 Query: 344 VELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADL 403 E V G FREDLYYRLNV+ + LPPLR+ +DI L + F ARF + + P ++ + Sbjct: 424 KEKVGLGEFREDLYYRLNVMEIKLPPLRERREDIPLLADHFTARFEKKFNITIPGVSDKV 483 Query: 404 NTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDE 463 Y WPGNVR+L+++I RA + + I +A +++ + + DE Sbjct: 484 MNAFMNYHWPGNVRELEHSIERATVLCRDKMISLEHIPGEIAEAYSLSGPRLKKQPAADE 543 Query: 464 ITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQK 509 ++ L R + K A+ LGVS I K+ +YG+ Sbjct: 544 PN-----EIIDALKRTGWNKAKAARLLGVSRKTIYRKIEKYGIQSP 584 >UniRef50_B8FWA2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FWA2_DESHD Length = 597 Score = 503 bits (1297), Expect = e-141, Method: Composition-based stats. Identities = 132/453 (29%), Positives = 227/453 (50%), Gaps = 26/453 (5%) Query: 79 HLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWL 138 + +L + + ++ VD K K+ + N A + + A++++ N L + Sbjct: 146 NETFDTVLNIIRDGIVVVDEKGKITLVNQAMADFLTLPPEEMIGKPIAEIMSS-NQLHHV 204 Query: 139 ESEPQDSHNEHVVINGQNFLMEITPVYLQDE-------------NDQHVLTGAVVMLRST 185 +E + I G+ ++ +P+ + + L V L Sbjct: 205 ACTGLSQTSEVLTIRGKPLIVSNSPIIKGGKVVGAVGKAVFPHLAEAQELAEKVRCLEHK 264 Query: 186 IRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAY 245 + ++ +VA SP+MK + ++ +A ++ +LITG++GTGK+ A+ Sbjct: 265 VTFFQEELQKNRTAQDIMKDMVAESPQMKKLKDEISIVATSTSTVLITGESGTGKEGVAH 324 Query: 246 ACHQASPRAGKPYLALNCASIPEDAVESELFGH--------APEGKKGFFEQANGGSVLL 297 A H S R P++ +NCASIPE +ESE+FG+ A GK G E+A+GG++ L Sbjct: 325 AIHLGSDRGKGPFIKVNCASIPESLMESEMFGYVGGAFTGAAKNGKPGRIERADGGTLFL 384 Query: 298 DEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLY 357 DEIGEM +QAKLLR L D R+G + V++R++ AT K L + KG FR+DLY Sbjct: 385 DEIGEMPLALQAKLLRVLQDREIERLGSTETIKVNIRILAATNKKLSNAIAKGEFRQDLY 444 Query: 358 YRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVR 417 YRLNV+ L+LPPLR+ +DI PLT F+++F D + + L +Y+WPGN+R Sbjct: 445 YRLNVINLHLPPLRERLEDIEPLTHFFISKFNDILKANVSGITPNAMATLLQYSWPGNIR 504 Query: 418 QLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLD--EITSRFERSVL-T 474 +L+N + RA+ + + + A+G+ + ++ + + ER ++ Sbjct: 505 ELENVVERAVNYTRSGLIELIHLP-HQIISGNTALGQVMNKKTIRHQDRLGQIERDMIAA 563 Query: 475 QLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 L + + K AK L +S + + +KL +Y L+ Sbjct: 564 ALEKAGGNKTKAAKLLNLSRSRLYDKLNKYDLN 596 >UniRef50_Q1K388 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K388_DESAC Length = 648 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 131/433 (30%), Positives = 218/433 (50%), Gaps = 14/433 (3%) Query: 83 SALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEP 142 +++++ E ++ VD ++ N ++ G +++ + L Sbjct: 219 DTIIQSMSEGLVIVDPAGEITKINQVGARILGVSAREAIGLHISKMFGDNAPVLDLLRTG 278 Query: 143 QDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSA 202 N+ V+++G + L+D+ Q + +V+ RS+ + R L + + Sbjct: 279 IAYENKEVMLDGGQRAFYCSATLLRDDYGQMIGAVSVLRPRSSSKRSRCL-PTTQRARYS 337 Query: 203 FSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALN 262 F +++ S MK A++ + + +LI G++GTGK+L A H AS R G+P++A+N Sbjct: 338 FDEMIGDSDAMKKTRHMAERASRSLSTVLIQGESGTGKELIAQGIHNASSRHGQPFVAVN 397 Query: 263 CASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRF 314 CA+I E +ESELFG+ G+ G E ANGG++ LDEIG+M +MQ KLLR Sbjct: 398 CAAITETLLESELFGYEEGSFTGAKKGGQPGKVEMANGGTLFLDEIGDMPLQMQVKLLRM 457 Query: 315 LNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCP 374 L + RVG E+ +DVR+I AT +NL + VQ+G FR+DLYYRLNVL + +PPLR+ Sbjct: 458 LQERRICRVGSSEEISIDVRIIAATHQNLKQAVQEGCFRKDLYYRLNVLPITIPPLRERM 517 Query: 375 QDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQL-DGY 433 D+ L + V + + G +++ Y WPGN+R+L+N I RA+ + DG Sbjct: 518 DDLPALAKFLVTKLSGRFGKEPVAISSLFMRACQSYDWPGNIRELENVIERAMNMVDDGD 577 Query: 434 ELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVS 493 L + I L + D + L E+ V+ L + + + LG+S Sbjct: 578 ALTAEMIDLDPVELPADHAIPDGVR-PLKEVEMEM---VVRALEMSRGNIVHASSLLGIS 633 Query: 494 HTAIANKLREYGL 506 I K++EY + Sbjct: 634 RNTIYRKIKEYDI 646 >UniRef50_C6HY50 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HY50_9BACT Length = 477 Score = 501 bits (1290), Expect = e-140, Method: Composition-based stats. Identities = 133/440 (30%), Positives = 224/440 (50%), Gaps = 25/440 (5%) Query: 84 ALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFN------FLRW 137 +L++L E V+++ + KV N A+ ++ G + + + + Sbjct: 42 NILDSLEEGVIAIGLDKKVLYLNRAAREMLGLSQGEVFGMDCQKAMRSSVCSARCLIEKT 101 Query: 138 LESEPQDSHNEHVVING--QNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNV 195 +ES + E + + + L+ + L+D + + G V + ++ + + Sbjct: 102 IESGEPYRNYEISLTDRHRRTRLVRVNTALLKDADGH--VVGGVEIFHDVTQLAELKKEL 159 Query: 196 AAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAG 255 + AF +I+ S KM+ + + +A + +LI G++GTGK+L A+A H+ SPR Sbjct: 160 KGR--YAFGKIIGQSEKMRELFDLLPVVAQSKSTVLIEGESGTGKELIAHAIHENSPRKD 217 Query: 256 KPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQ 308 P++ +NCA++ E +ESELFGH A K G FE A+GG++ LDEIGE+S MQ Sbjct: 218 GPFIKVNCAALSEGVLESELFGHVRGAFTGAVSSKPGRFELASGGTLFLDEIGEISASMQ 277 Query: 309 AKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLP 368 KLLR L + F RVG + VDVRVI AT ++L + G FR DLYYRL V+ L LP Sbjct: 278 VKLLRVLQEEEFERVGGTKTLKVDVRVIAATNRDLKAAIDAGTFRRDLYYRLRVVPLFLP 337 Query: 369 PLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALT 428 PLR+ +DI L F++R+ E G L+ + +L +++PGN+R+L+N I A+ Sbjct: 338 PLRERREDIPLLISSFLSRYNAEFGKNVVGLSQEAQNILMNHSYPGNIRELQNIIEHAVL 397 Query: 429 QLDGYELRPQDI---LLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRK 485 G + +++ L P + ++ A + +L + R + + + + Sbjct: 398 LSTGRTIGVRELPRDLAPIPEESSFADVALSRSNALRTMEDVMIR---KAVEKTQGNMSQ 454 Query: 486 LAKRLGVSHTAIANKLREYG 505 AK LG+ + + KLRE G Sbjct: 455 AAKLLGIGRSTLWRKLREMG 474 >UniRef50_Q3ACE2 Sigma-54 dependent transcriptional regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ACE2_CARHZ Length = 573 Score = 500 bits (1289), Expect = e-140, Method: Composition-based stats. Identities = 146/496 (29%), Positives = 237/496 (47%), Gaps = 32/496 (6%) Query: 33 IDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEP 92 + +Y + + + E++ IA ++ V + L +LEA E Sbjct: 86 VVNRTPLYYKGKIIGAIGVAQEINELKNIAD--ELENVLAL-----KQTLETILEAGQEG 138 Query: 93 VLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVI 152 + +D+ V AN A LFG KL + N L F ES D E V I Sbjct: 139 YMVLDLDKTVTHANKAIADLFGLKLSDIVNKPINSLTANPFFCELPESA-DDIKTEVVEI 197 Query: 153 NGQNFLMEITPVY-------------LQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQD 199 NG+ + P+ Q+ +D L V L S + + Sbjct: 198 NGRQVVAFKYPIVKDYKLYGGVIKVIFQEVSDLLALAEKVNQLNSELSYYKNELTKYTSK 257 Query: 200 VSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYL 259 ++I+ P + + E +K+A + +LI G++GTGK+L A+A H S R ++ Sbjct: 258 QFTENKIIGNHPSIVRLKEIIKKIAPYNTTVLIRGESGTGKELVAHALHVESGRP-GSFI 316 Query: 260 ALNCASIPEDAVESELFGH--------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKL 311 +NCA+IPE+ E+ELFG+ G+ G FE AN G++ LDEIG+M MQAKL Sbjct: 317 KVNCAAIPENLFEAELFGYVEGAFTGAKKGGQIGKFELANNGTIFLDEIGDMPLTMQAKL 376 Query: 312 LRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLR 371 LR L + R+G+ ++VRVI AT +NL EL++K FREDLYYRLNV++L +P LR Sbjct: 377 LRVLQEKEVERLGDRKTRKINVRVIAATNQNLEELIKKKKFREDLYYRLNVISLYVPALR 436 Query: 372 DCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLD 431 + +D+ L + F+ +F E G ++ ++ + Y+WPGN+R+L+N + R ++ Sbjct: 437 ERIEDLPLLIKYFIEKFNKEYGTNVTGISPEVMDIFMNYSWPGNIRELENVLERCFNLVE 496 Query: 432 GYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLT-QLYRNYPSTRKLAKRL 490 G + + L P + E + SL + +E+ ++ L + + K A L Sbjct: 497 GKVIEKK-YLPPYILGEELKNKEFPLGQSLTNLLEAYEKELIKAALLKAKGNKSKAANLL 555 Query: 491 GVSHTAIANKLREYGL 506 G+S + +L+ + L Sbjct: 556 GISRQWLHKRLKYFNL 571 Score = 72.8 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 53/120 (44%), Gaps = 3/120 (2%) Query: 78 EHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRW 137 HL+L +L+++ ++++D + KV + N AS ++F + +++ + Sbjct: 7 NHLSLLNILDSIHNAIVAIDEEGKVIIFNKASERVFNYPAKKALGKNINEVLPFSGLNKV 66 Query: 138 LESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAA 197 L++ + I +++ TP+Y + + + G + + +L+NV A Sbjct: 67 LKTGESHIGRK-FKIGDNLYVVNRTPLYYKGKIIGAI--GVAQEINELKNIADELENVLA 123 >UniRef50_B2A2S4 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Clostridia RepID=B2A2S4_NATTJ Length = 471 Score = 500 bits (1288), Expect = e-140, Method: Composition-based stats. Identities = 146/449 (32%), Positives = 226/449 (50%), Gaps = 26/449 (5%) Query: 85 LLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQD 144 + + +P PV+ VD K + M N A L + A ++ + + L+S D Sbjct: 18 IFDVIPVPVILVDEKGIIRMINRAFADLLKVSKQQAIGRPAVEVDHNSKWPVVLKSGEFD 77 Query: 145 SHNEH-VVINGQNFLMEITPVYLQDENDQHVLTGAVV---------------MLRSTIRM 188 +H G++ ++ P+Y D + G V+ +L + Sbjct: 78 IAKKHKFARTGEDAVVHRIPIYDYDSGEIVGGFGMVLFQNLKELRDLADKNKLLEKKLDH 137 Query: 189 GRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACH 248 +Q ++ I S KM+ + A+K A +LITG++G GK++FA A H Sbjct: 138 YKQRVRQIYSTKYSWDNIKTCSSKMEACKQNAKKAARTDLNVLITGESGVGKEIFAQAIH 197 Query: 249 QASPRAGKPYLALNCASIPEDAVESELFGH--------APEGKKGFFEQANGGSVLLDEI 300 S R+ P++ +NCA+IPE+ +ESELFG+ + EGK G FE A+ G++ DEI Sbjct: 198 NESHRSDHPFIKVNCAAIPENLLESELFGYQGGAFTGASKEGKPGKFELADKGTLFFDEI 257 Query: 301 GEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRL 360 G+M +MQAKLLR + +G R+G E VDVR+I AT KNL ELV FREDL+YR+ Sbjct: 258 GDMPKKMQAKLLRVIQEGEVERLGGQKEQEVDVRIIAATNKNLEELVATDDFREDLFYRI 317 Query: 361 NVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLK 420 NVLTLN+PPL+D +DI L E F+ E G +++ + VL +Y WPGN+RQLK Sbjct: 318 NVLTLNIPPLKDRKEDIALLAEDFLYETKQEMG-ENKQISQEAVEVLQKYDWPGNIRQLK 376 Query: 421 NAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNY 480 N I R + + DI + ++ E L+EI + E+ V+ + Y Sbjct: 377 NIIQRLAVNAETTVIEKSDIPIKLLKQLQISESPSYPEEGLNEIVEQVEKKVIRETLELY 436 Query: 481 P-STRKLAKRLGVSHTAIANKLREYGLSQ 508 + A L + + + K+++YGL + Sbjct: 437 DFNKSMAASILNIPRSTLYRKMKKYGLKE 465 >UniRef50_Q67SC0 Sigma-54-dependent transcriptional regulator n=2 Tax=Symbiobacterium thermophilum RepID=Q67SC0_SYMTH Length = 479 Score = 499 bits (1287), Expect = e-140, Method: Composition-based stats. Identities = 149/454 (32%), Positives = 229/454 (50%), Gaps = 37/454 (8%) Query: 85 LLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQD 144 +L++L + V++VD + V AN A+ ++ G D++ ++++ + L L S Sbjct: 32 VLDSLHDGVVAVDSEGYVIYANEANTRITGLTRDQVVGRHVSEVVPNSHILDVLASRTP- 90 Query: 145 SHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIR---MGRQL--------- 192 + + I PVY Q + GAV + R + RQL Sbjct: 91 LLGVRTRVFDHVVVSNIVPVYHQG-----RMVGAVSVFRDITEVLALSRQLDEARNTIDL 145 Query: 193 --QNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQA 250 +N+ A V+ I+ SP + + A+K A + +P+LI G++GTGK++ A H Sbjct: 146 LRENLTAAPVAEDGVIIGQSPAAQRMYLTARKAATVDSPVLIEGESGTGKEVMARLIHNR 205 Query: 251 SPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGE 302 S R +P +A+NCA+IP +ESELFG+ G+ G F+ A+GG++ LDEIG+ Sbjct: 206 SARRSQPLIAVNCAAIPGTLLESELFGYEEGAFTGSRKGGRPGLFQLADGGTLFLDEIGD 265 Query: 303 MSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNV 362 M P +QAKLLR L G RRVG V+VR+I AT +NL +LV++ FREDLYYRL V Sbjct: 266 MDPGLQAKLLRALQSGEIRRVGGTTVQKVNVRIISATNQNLAQLVREKRFREDLYYRLRV 325 Query: 363 LTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNA 422 + L LPPLR+ D+ E + R + G P + + L Y +PGN+R+L+N Sbjct: 326 IHLVLPPLRERRADLPLFLEHAMRRVCERLGRPPARFSPAALRALMAYPFPGNIRELENV 385 Query: 423 IYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGS----LDE-----ITSRFERSVL 473 + +A+ +G + D+ A T A G G L++ ER VL Sbjct: 386 VEQAVVLAEGDVIDVGDLPPDVVGAETAAAGPADRSGDGWLGLNDPGTFPTLEEVERRVL 445 Query: 474 TQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 R + S +LA+ LG+S + KL YGL+ Sbjct: 446 EAGLRAFDSKAELARHLGLSRATLYRKLARYGLA 479 >UniRef50_P26047 Signal-transduction and transcriptional-control protein n=10 Tax=Clostridium RepID=STC_CLOBE Length = 632 Score = 499 bits (1287), Expect = e-140, Method: Composition-based stats. Identities = 129/470 (27%), Positives = 228/470 (48%), Gaps = 15/470 (3%) Query: 49 ESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPA 108 + ++A ++ I V+ + + L+ + +++ + +VD K + N + Sbjct: 169 HTLGLVVAAVKSIENHLKVKKTQN-ELVKTYQYLNKITDSVNLGIFAVDTKGIIKAINKS 227 Query: 109 SCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQD 168 +C + + + N +++ + + Q +E ++ + + I ++D Sbjct: 228 ACDMLHINEEDVINKNVDTVLDSWKHILQRLRNGQSYEDEEIMYSDKKKRFNINVYPIKD 287 Query: 169 ENDQHVLTGAVVMLRSTIRMGRQLQN-VAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLS 227 +N +TG V + + + + + F I+ S MK + EQ + ++ Sbjct: 288 KNS--NITGMVGIFKDIQNVYNLVNKYINRTAKYTFDDIIGQSEAMKRLKEQIKSISNSP 345 Query: 228 APLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE------ 281 + +LI G++GTGK+L A + H S R K ++A+NC +IP+ +ESELFG+ Sbjct: 346 STVLIQGESGTGKELIAQSIHNNSNRRSKSFVAINCGAIPKSLIESELFGYEEGAFTGAK 405 Query: 282 --GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICAT 339 G G FE AN G++ LDEIGEM MQ LLR L +G R+G + V VDVR+I AT Sbjct: 406 RGGCPGKFELANEGTLFLDEIGEMPLDMQVNLLRVLQEGCITRIGGNKCVDVDVRIIAAT 465 Query: 340 QKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKL 399 KNL + ++ G FREDLYYRL+V+ + +PPLR+ DI L E F+ AD+ G P++ Sbjct: 466 NKNLKKEIEDGNFREDLYYRLSVIPIYVPPLRERNGDIGILIEHFLKIKADKLGKLIPEI 525 Query: 400 AADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEG 459 ++ L Y WPGNVR+L+N I + ++ + V + Sbjct: 526 RKNIYENLLSYGWPGNVRELENCIENIVNMNGNTSFNFENRTIKKDVNCYSDVSLEYDMC 585 Query: 460 SLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQK 509 SL+E+ R + Q + K + LG++ + + K+++Y + + Sbjct: 586 SLEELEKRAISICINQ---CGGNISKACRILGINRSTLYIKIKKYNIKVR 632 >UniRef50_B0TAR7 Sigma-54-dependent transcriptional activator (Nifa/ntrc family) n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TAR7_HELMI Length = 767 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 153/530 (28%), Positives = 237/530 (44%), Gaps = 83/530 (15%) Query: 48 FESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANP 107 FE S+L + V +++ L +LE++ + + VD + V NP Sbjct: 236 FEDISALEKVTHELHEVKELKE-----------RLQLVLESVQDGICVVDREGCVTYVNP 284 Query: 108 ASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQ 167 A ++ + + L L + LE+ + + + P+ + Sbjct: 285 AYARIVNGRREDLIGRDVRNLSPRGARRQALETGKPVLGHLAQKDGDVTVIADAYPIIVD 344 Query: 168 DENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVS-------------AFSQIVAVSPKMK 214 E + V L + +L +AA+ AF++ + S K++ Sbjct: 345 GEVTG--VVSIVKTLTDVQTLAEKLNRMAARAEYLEQELRRAKKPGGAFARFIGQSGKVR 402 Query: 215 HVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESE 274 + A+K A A +LI G++GTGK+L A H++ PR+ P++ +NCA+IPE +ESE Sbjct: 403 DALAMAEKAAEGPATVLIRGESGTGKELVAEGIHESGPRSKGPFIRVNCAAIPETLLESE 462 Query: 275 LFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDH 327 LFGH A + K G FE A+ G++ LDEIGE+ MQAKLLR L + R+G + Sbjct: 463 LFGHEKGAFTGAIKRKLGKFELAHKGTLFLDEIGELDKGMQAKLLRVLQEKEISRIGGEE 522 Query: 328 EVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVAR 387 VDV++I AT ++L LV +G FREDLYYRLNV+ + LPPLR+ +DI L E F+ + Sbjct: 523 TFTVDVKIIAATNQDLERLVAEGRFREDLYYRLNVIPILLPPLRERKEDIPLLVEHFLQQ 582 Query: 388 FADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDA 447 EQG + +D L Y+WPGNVR+L N I R +T DG + D LP Y Sbjct: 583 TGREQGKALRGIHSDALEALMHYSWPGNVRELANLIERVVTLSDGPWITDSD--LPTYLR 640 Query: 448 ATVAVGEDAMEGSLDEIT------------------------------------------ 465 A L+E Sbjct: 641 ERAAEENHEGR-PLEERPAGGRYGAGERGYNGREHKIGRSVGGISGSLFRENRWEEQGDA 699 Query: 466 -----SRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKK 510 +E+ ++T R + S AK LG++H +A K R+YG+ + + Sbjct: 700 PLLTWEAYEQQIITLALRRHGSFNAAAKALGLTHKTVAAKARKYGIDKNE 749 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 41/113 (36%), Gaps = 6/113 (5%) Query: 85 LLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQD 144 + ++ + ++ D V + NPA+ ++ G + + A +I G E+ + Sbjct: 145 VFASMADGLIVTDAHDVVTVFNPAAERIMGMRASDVIGRKAKAVIAGSRMHIVAETGQPE 204 Query: 145 SHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAA 197 +I L TP+ + + + GAV + + + + Sbjct: 205 L-GRRQMIGDAVILTNRTPIVVDGQ-----VKGAVAVFEDISALEKVTHELHE 251 >UniRef50_Q3A203 Two component signal transduction response regulator n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A203_PELCD Length = 575 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 139/447 (31%), Positives = 234/447 (52%), Gaps = 28/447 (6%) Query: 79 HLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWL 138 L+A+ E++ + +LSVD V N A+ +L G D A + R L Sbjct: 137 RTNLAAIFESVKDGLLSVDASGCVTDFNQAASRLCGWSKDDRGEKIDALSMPCAGTCRDL 196 Query: 139 ES---------EPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMG 189 + E + EH+ GQ + +P+ +N + + GAV+++R R+ Sbjct: 197 LTRTLEEGKSMELKRMECEHLERAGQVVSLSTSPL----QNKEGDVFGAVMVVRDETRLD 252 Query: 190 RQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQ 249 +++ + +F +++A S KM+ V + LA + + +LI G++GTGK+L A A H Sbjct: 253 DLERSLNKRQ--SFHRMIATSSKMQQVFGLIETLAQVPSTVLILGESGTGKELVAEALHL 310 Query: 250 ASPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGE 302 + PR +P + +NCA++ + +ESELFGH A + G F++A+GG++ LDEIG+ Sbjct: 311 SGPRKNRPLVKVNCAALSDTLLESELFGHVKGSFTGAVKDHVGRFQKADGGTIFLDEIGD 370 Query: 303 MSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNV 362 +SPRMQ +LLR L + R+G+ V VDVR++ AT ++L E V+ G FR+DLYYRL V Sbjct: 371 ISPRMQLRLLRVLQEKEVERIGDSTPVKVDVRIVAATNQDLEEKVRSGEFRQDLYYRLKV 430 Query: 363 LTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNA 422 +TL LPPLR+ +DI P+ + F+ R+ + G + ++ + Y WPGNVRQL++A Sbjct: 431 ITLALPPLRERKEDIPPMVDHFIQRYNEVLGRNLQGVDQEVMRAMQAYDWPGNVRQLEHA 490 Query: 423 IYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPS 482 I L + + GE A+ + + ++ +L L + + Sbjct: 491 IEHILIHCTEPLASLAHVP------EEILQGEQAVGKYCADSEEQEQQQILAALDKTDWN 544 Query: 483 TRKLAKRLGVSHTAIANKLREYGLSQK 509 K A+ LG+ + K+ ++GL + Sbjct: 545 KAKAARLLGIDRKTLYRKIEKFGLVEP 571 >UniRef50_A4IPF8 Transcriptional regulator n=6 Tax=Bacillales RepID=A4IPF8_GEOTN Length = 571 Score = 498 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 131/461 (28%), Positives = 218/461 (47%), Gaps = 33/461 (7%) Query: 77 REHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLR 136 R + +L+A E V+ VD V N A CQ G + + ++I Sbjct: 111 RLAETMKTVLDAAYEGVVVVDGNGMVREINRAYCQFLGIRREDAIGKHVTEVIENTRLHI 170 Query: 137 WLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHV-------LTGAVVMLRSTIRMG 189 ++S + I GQ ++ P++ + V ++ + + + Sbjct: 171 CVQSGIPE-RGYIQKIYGQPMVVHRIPIWRDGKVIGAVGMLIFQGVSEVYAIFQRLQELS 229 Query: 190 RQL------------QNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTG 237 R+ Q A +I+ P + V + ++ A + + +LITG++G Sbjct: 230 REASRKEKNEAEASKQEAVASAAVGVERIIGRHPTIAAVKQMIRRAARVPSTVLITGESG 289 Query: 238 TGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPEG--------KKGFFEQ 289 TGK++ A A H+A A P++++NCA+IPE +E+ELFG+ K G F+ Sbjct: 290 TGKEVVARAIHEAGAHADGPFVSVNCAAIPEALLEAELFGYEDGAFTGAKKGGKPGKFQL 349 Query: 290 ANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQK 349 A+GG++ LDEIG+M MQAK+LR L + +VG E VDVR+I AT K L E+V+ Sbjct: 350 AHGGTLFLDEIGDMPLAMQAKILRVLEEKKVEKVGGLSETEVDVRIIAATNKPLEEMVRD 409 Query: 350 GMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTR 409 G FREDL+YRLN++ ++LPPLR+ DI L + R + GV A + VL Sbjct: 410 GTFREDLFYRLNIIRIHLPPLRERKTDIPALLAHHMERLCRQFGVVSKSFAKEAMEVLIN 469 Query: 410 YAWPGNVRQLKNAIYRALTQLDGYELRPQDIL----LPDYDAATVAVGEDAMEGSLDEIT 465 Y+WPGN+R+L N + ++ ++G + + + + G + EI Sbjct: 470 YSWPGNIRELVNVVEWLISMVEGENIEREHLPAYLSTIHPSVTPMPDGGANIADQWKEIV 529 Query: 466 SRFERSVLTQLY-RNYPSTRKLAKRLGVSHTAIANKLREYG 505 + ER + + + A+RLG+ + + KL++YG Sbjct: 530 YQSERERIAAALVAANGNKAEAARRLGIHRSTLYEKLKKYG 570 >UniRef50_B2A661 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A661_NATTJ Length = 577 Score = 497 bits (1281), Expect = e-139, Method: Composition-based stats. Identities = 146/479 (30%), Positives = 245/479 (51%), Gaps = 37/479 (7%) Query: 65 TDVRTVPWMPSEREHL-----ALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDR 119 D+ + + E L A++E+ + D + M N + ++ G K + Sbjct: 104 QDISELEHISQELAKTKAINDELRAIIESSYDGFWITDGEGYTIMINSSYERISGAKAEE 163 Query: 120 LRNHTAAQLING-----FNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHV 174 + +L L+ LE + + + H + +G+ ++ PV+ D N V Sbjct: 164 VVGRHMKELEEEGFCSESVTLKVLEQKERVTLM-HELFSGKKVMVTGNPVFDSDGNITKV 222 Query: 175 LTGA------------VVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQK 222 +T + ++ R ++ + ++ +IVA S K ++ QA + Sbjct: 223 VTNVRDISELLELKDELEKTQALTRHYKE-KLTEMEEKLGEGEIVAKSKVKKRLLAQAAR 281 Query: 223 LAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE- 281 +A + +LITG+TG GK++ A HQ S R+ +P++ +NC +IPE+ +ESELFGH P Sbjct: 282 VAAFDSTVLITGETGVGKEIVAKYIHQNSNRSEQPFIKINCGAIPENLLESELFGHEPGS 341 Query: 282 -------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVR 334 GK G FE ANGG++LLDEIGE+S +Q KLLR L D R+G +DV+ Sbjct: 342 FTGASKNGKPGKFEIANGGTLLLDEIGELSKDLQVKLLRALQDQEITRIGGVKPRQLDVK 401 Query: 335 VICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGV 394 +I T ++L E+V +G FREDLYYRL+V+ L +PPLR+ P DI L ++ ++ ++ GV Sbjct: 402 IIACTNRDLEEMVSQGEFREDLYYRLSVVPLYIPPLRERPDDIPFLIRHYIRKYNEKYGV 461 Query: 395 PRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGE 454 L++ L Y WPGNVR+L+N I R + + + D LP + Sbjct: 462 N-KGLSSSALEELVSYNWPGNVRELENMIERLVIMVPENLIETSD--LPQQIKESNVKIL 518 Query: 455 DAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKKNEE 513 + + SL + S+ E+ +L + +TR+ A+ LGV+ + + KL +YGL+ K +++ Sbjct: 519 ENL--SLPDAVSKLEKRMLQKAMEQSNNTREAAQILGVAQSTVVRKLDKYGLNYKHDDQ 575 Score = 77.4 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 59/135 (43%), Gaps = 8/135 (5%) Query: 78 EHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRW 137 ++ L +L+++ +++++ + ++++ N ++ ++ G + + ++I + Sbjct: 5 QNSDLEIILDSVYNGIIAINKEGEINLFNKSASEILGMSKEEVLGCDIREIIPETGLFKV 64 Query: 138 LESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAA 197 LES Q E V+N + L +P++ + E L GA+ + + + Q +A Sbjct: 65 LESS-QTFTTEKFVVNKKTLLTNRSPIFKEGE-----LIGALGIFQDISELEHISQELAK 118 Query: 198 QDV--SAFSQIVAVS 210 I+ S Sbjct: 119 TKAINDELRAIIESS 133 >UniRef50_UPI0001C424D6 transcriptional regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C424D6 Length = 567 Score = 497 bits (1280), Expect = e-139, Method: Composition-based stats. Identities = 135/501 (26%), Positives = 227/501 (45%), Gaps = 32/501 (6%) Query: 33 IDPIGRIYLNF------AELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALL 86 I I+++F E + + + + + V + + SE+ L L ++ Sbjct: 72 IAEGTNIHIDFRGHTFVLRKEHTTINDQLYYVYLFSSVKGLEEILSASSEKTEL-LETVM 130 Query: 87 EALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSH 146 E + V+ VD + M + + +++ + A +I ++ + Sbjct: 131 EFAFDGVVMVDKDGYITMLSKEYAEFLNVRVEDVIGKHATDVIENTRMHIVAKTGKPEVA 190 Query: 147 NEHVVINGQNFLMEITPVYLQDENDQHV-------------LTGAVVMLRSTIRMGRQLQ 193 + I G + P+ E V L V ++ + ++ + Sbjct: 191 DLQ-RIKGDYMIATRVPIIKNGEITGAVGRVLFQNVGGFNSLYKRVKLMETELKKYKGEF 249 Query: 194 NVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPR 253 + F IV S + QA++ A + +L+ G++GTGK+LFA+A H A R Sbjct: 250 REQNKATYTFHHIVGDSDSIIKAKHQAERAANSDSNVLLLGESGTGKELFAHAIHNAGSR 309 Query: 254 AGKPYLALNCASIPEDAVESELFGHAPEGKKG--------FFEQANGGSVLLDEIGEMSP 305 A ++ +NCA+IP D +ESELFG+ G FE A+GG++ LDEIGE+ Sbjct: 310 APGSFVKVNCAAIPPDLLESELFGYEEGSFTGAKKGGKKGKFEAADGGTIFLDEIGELPL 369 Query: 306 RMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTL 365 MQ K LR L + RVG +DVRVI AT +NL E+V KG FR DL+YRLNV+ + Sbjct: 370 HMQVKFLRVLQEKEVERVGSTTSKPIDVRVIAATNRNLEEMVDKGEFRLDLFYRLNVVAI 429 Query: 366 NLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYR 425 ++PPLRD +D+ L F+ + ++ D +L +Y WPGN+R+L+N I R Sbjct: 430 HIPPLRDREKDLGQLCLHFIEKLNPIMKKKVDGISKDAQRLLHQYKWPGNIRELENVIER 489 Query: 426 ALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRK 485 AL LD + + L +++ S+++ +++ L + + K Sbjct: 490 ALNMLDNGTVIKSEHLPAKLTDTPSNHSVESLAVSIEKAEKT---ALMNALKQTKGNRSK 546 Query: 486 LAKRLGVSHTAIANKLREYGL 506 A LG+S + KL +Y L Sbjct: 547 AASLLGISRSTFYEKLTKYQL 567 Score = 48.1 bits (114), Expect = 9e-04, Method: Composition-based stats. Identities = 22/134 (16%), Positives = 47/134 (35%), Gaps = 6/134 (4%) Query: 76 EREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFL 135 ER + + A++ +LP + D+ + N ++F + DR+ ++ Sbjct: 11 ERSYEQMEAIIRSLPFGTILTDLDQTILFHNETVQKIFKRPADRINGEVLTTYVD----- 65 Query: 136 RWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNV 195 L + N H+ G F++ + D+ L +V L + + + Sbjct: 66 PNLLDGIAEGTNIHIDFRGHTFVLRKEHTTINDQLYYVYLFSSVKGLEEILSASSEKTEL 125 Query: 196 AAQ-DVSAFSQIVA 208 AF +V Sbjct: 126 LETVMEFAFDGVVM 139 >UniRef50_C1P9P9 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Bacillaceae RepID=C1P9P9_BACCO Length = 457 Score = 497 bits (1280), Expect = e-139, Method: Composition-based stats. Identities = 132/457 (28%), Positives = 226/457 (49%), Gaps = 31/457 (6%) Query: 78 EHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLI--NGFNFL 135 E L A+L A + + V+ K +V N A+ + + + + + L Sbjct: 4 ELSYLQAVLSAENDAITIVNEKKEVIYWNDAAVRTYNIPKEMILTKKITDFFRDDDLMVL 63 Query: 136 RWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNV 195 + L ++ + + H ++ ++ P++ +++ L GAV + R ++ R N+ Sbjct: 64 KVLRTKARITDQYHRPRPDKHVVVNARPIF----DNRGRLIGAVSVERDITQIVRLNDNL 119 Query: 196 AAQ---------------DVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGK 240 + + + FS++ S ++ ++ A K A A LI G++GTGK Sbjct: 120 VSTSIELNELRQKMYTSYEETPFSKLKGKSRALRDTIQIAAKAAKTDAVTLILGESGTGK 179 Query: 241 DLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANG 292 ++ A A H+AS R P++ +NC SIP ESELFG+ +GK G E+A+G Sbjct: 180 EICARAIHEASARKNGPFIPVNCGSIPSALFESELFGYEPGTFTGAEKKGKAGKIEEADG 239 Query: 293 GSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMF 352 G++ LDEIGE+ MQ KLLR L + R+G+ ++VR I AT +++ +++++ F Sbjct: 240 GTLFLDEIGELPLDMQVKLLRVLQEKVIYRIGDASGRKINVRFIAATNQDIEKMMKEKTF 299 Query: 353 REDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAW 412 R DLYYRLNV+ + +PPLR DI L F+ +FA + +P P+LA D + L Y W Sbjct: 300 RSDLYYRLNVIQITMPPLRVRTDDIPVLARYFLKQFAVQYKMPEPELAPDALSFLQAYHW 359 Query: 413 PGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAME-GSLDEITSRFERS 471 PGNVR+L+N + R + + + +L T G E G+L E+ Sbjct: 360 PGNVRELRNLMERMVILSEKPFIDRASLLRFFQGNETQPSGSAIPESGTLPVEKENMEKQ 419 Query: 472 VLTQLYRN-YPSTRKLAKRLGVSHTAIANKLREYGLS 507 ++ + R + AK LG+S + KL+++G+ Sbjct: 420 LIEKALRKAGGNKSAAAKELGISRVTLYQKLKKFGIG 456 >UniRef50_B2A1V9 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A1V9_NATTJ Length = 585 Score = 495 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 134/481 (27%), Positives = 223/481 (46%), Gaps = 40/481 (8%) Query: 65 TDVRTVPWMPSERE-HLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNH 123 V+ + + R A+ +LE + ++ +D + N A Q G Sbjct: 107 DSVKLKRELSNARSSANAMENVLEKAYDGIVMIDHNGIITKFNSAYQQFTGISEQEALGK 166 Query: 124 TAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLR 183 ++I + LE+ + E I G + P+Y + E + G V+ R Sbjct: 167 HVTEVIENTRMHKVLETGKPEI-GEIQKIKGCEMVATRVPIYEEGEIVG--VLGKVL-FR 222 Query: 184 STIRMGRQLQNVAAQ----------------DVSAFSQIVAVSPKMKHVVEQAQKLAMLS 227 + + + A F IV S K+ E A+ + Sbjct: 223 DIKEVKALAERLDAATNELDYYKGEVRKLKGSKYNFENIVGSSKKIIEAKEMAKIASQSD 282 Query: 228 APLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAP------- 280 + +LI G++GTGK+LFA+A H S R ++ +NCA+IPE+ +E+ELFG+ Sbjct: 283 STVLIRGESGTGKELFAHAIHDGSLRRYGAFIRVNCAAIPENLLEAELFGYEKGAFTGAN 342 Query: 281 -EGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICAT 339 EGK G FE ANGG++ LDEIG+M MQ KLLR L + +R+G + + +DVR+I +T Sbjct: 343 KEGKPGKFELANGGTIFLDEIGDMPFDMQVKLLRALQEREVQRIGSERVIDLDVRIIAST 402 Query: 340 QKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKL 399 +NL +L+ + FREDLYYRLNV +N+PPLR+ D+ L + DE G+ + Sbjct: 403 NRNLEQLIAQDKFREDLYYRLNVFNINVPPLREMKDDLEKLINFIIKDLNDEMGLNVNGV 462 Query: 400 AADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILL----------PDYDAAT 449 +++ N +L Y WPGN+R+LKN + R++ G + I ++ + Sbjct: 463 SSEANKILNSYHWPGNIRELKNVLERSMNVAKGNIITKDCIPQYLLTWAGAEEQQNNSNS 522 Query: 450 VAVGEDAMEGSLDEITSRFERSVLT-QLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQ 508 + + L + E+ + L + + +K A+ L + + + KL EY +S Sbjct: 523 KSHEINLHNLELRSVVKEAEKLAIETALKQTNNNKKKAAELLNIHRSGLYKKLEEYNISD 582 Query: 509 K 509 + Sbjct: 583 Q 583 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 21/142 (14%), Positives = 52/142 (36%), Gaps = 14/142 (9%) Query: 82 LSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAA-QLINGFNFLRWLES 140 +L+ A+ + ++ D +K++ N + + F + L I + Sbjct: 2 FDSLMNAINDALIVTDEHNKIECFNYKAEETFNISHNHLGEKIEGIIFIPDDLKKSDTIT 61 Query: 141 EPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVM--LRSTIRMGRQLQNVAAQ 198 E + + G+ + TP+ +Q L + + ++++ R+L N + Sbjct: 62 EGKKESQRRINYYGKTLSVIKTPIIEPTIENQCHLGNYYIFEDISDSVKLKRELSNARSS 121 Query: 199 DVSAFSQIVAVSPKMKHVVEQA 220 M++V+E+A Sbjct: 122 AN-----------AMENVLEKA 132 >UniRef50_C0GH67 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GH67_9FIRM Length = 569 Score = 494 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 150/521 (28%), Positives = 249/521 (47%), Gaps = 30/521 (5%) Query: 8 EDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDV 67 +D++ +T L +L+ ID+ IE + +L+ + + + A + Sbjct: 51 KDKVFVTDSLEELVTKPEIDVI-IEATGSSEVQRKIHKLKHQGTAVMEALAGNLLMSILQ 109 Query: 68 RTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQ 127 + ++ L A+L ++ E + D + NPA ++ G + + Sbjct: 110 AKEELLEVKKLKSELWAILNSVQEAIEVADNSGLIKYTNPAFTRVTGIPEAQRVGKNIFE 169 Query: 128 LINGFNFLRWL-ESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTI 186 + L + +P + V +G + P+ ++ E + GAVV+ + Sbjct: 170 ASPHGALAQALVKQKPVVGYRSKVGGSGVEVISNAAPILVEGE-----VEGAVVVFQPIT 224 Query: 187 RMGRQLQNVAAQ----------------DVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPL 230 + + + + F + S ++ A+K A +P+ Sbjct: 225 DILKLMDELQKSTTIIENLYAKIDQITGSKYTFDDLTGSSKVFAATIDMAKKAAKSDSPV 284 Query: 231 LITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH-------APEGK 283 L+TG++GTGK+L+A+A HQAS R GKP++ + CAS+PE+ +ESELFGH A + K Sbjct: 285 LLTGESGTGKELYAHAIHQASQRRGKPFIKIGCASVPEELLESELFGHEKGAFTGAVKTK 344 Query: 284 KGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNL 343 G E ANGG++ LDEIGEM+P +Q KL+R L D F RVG + DVRVI AT +L Sbjct: 345 LGKVELANGGTLFLDEIGEMNPYLQGKLMRLLQDQEFERVGGSETIRSDVRVITATNIDL 404 Query: 344 VELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADL 403 LV+KG FRE+LY+ LNV+ LNLPPLR +DI L E F+ + + G +A D Sbjct: 405 KSLVRKGRFREELYFLLNVIELNLPPLRQRREDIPVLVEHFIGKLNRKLGKKVRGVAPDA 464 Query: 404 NTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDE 463 +L+ Y WPGN+R+L+N I RA+ ++ + Q + LD+ Sbjct: 465 LQLLSGYDWPGNIRELENVIERAMVSVETEVIGRQHFSPYIGQFTNAETTQCTEIVPLDK 524 Query: 464 ITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREY 504 + ++ L + + +K A+ L +S + NKL++Y Sbjct: 525 MEQMMLKAALARYGESLEGKKKAAQALNISLATLYNKLKKY 565 >UniRef50_A6TX18 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Alkaliphilus RepID=A6TX18_ALKMQ Length = 593 Score = 494 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 132/475 (27%), Positives = 226/475 (47%), Gaps = 27/475 (5%) Query: 52 SSLMAEIRRIAGVTDVRTVPWMPSEREH---LALSALLEALPEPVLSVDMKSKVDMANPA 108 +LM + ++A + + + +++ L +L+++ +++VD K+ N Sbjct: 123 KNLMEFLNKMADLISSKVIEQESTDQIKFLVKELETVLDSVDRGIIAVDGTGKIIHYNKR 182 Query: 109 SCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVI---NGQNFLMEITPVY 165 + LF + + + L+ F+ + Q + V +G + + P+ Sbjct: 183 AIGLFKLSENEVCDRNIKDLLEEFDVNLLFKKSRQVKNRAFVYRGKGDGFRGVFDANPIR 242 Query: 166 LQDENDQHVLTGAVVMLRSTIRMGRQLQNVA-AQDVSAFSQIVAVSPKMKHVVEQAQKLA 224 + EN G V + + + ++ + F I+ S V Q +K A Sbjct: 243 IGSEN-----FGIVFTFSNISDVLGIINDMTTGTMIMKFDDIIGESQLFNEVKIQGEKAA 297 Query: 225 MLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--- 281 S+ +LI G++GTGK+LFA A H S R KP++ +NCA+IPE +ESELFG+ Sbjct: 298 QSSSTVLIQGESGTGKELFARAIHFHSQRCKKPFIPINCAAIPEQLLESELFGYEEGAFT 357 Query: 282 -----GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVI 336 GK G FE ANGG++ LDEIG+M +Q KLLR L + +VG + +D R+I Sbjct: 358 GAKRGGKSGKFELANGGTIFLDEIGDMPLHLQTKLLRVLQEQVIEKVGGKDFIPIDARII 417 Query: 337 CATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPR 396 AT K+L V +G FR+DL+YR+NV+ L++PPLR +D+M L + + ++ G Sbjct: 418 AATNKDLENRVLEGEFRQDLFYRINVIPLHIPPLRQRGEDLMILVSYLLNKCNEKLGKYI 477 Query: 397 PKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDA 456 ++ + V Y WPGNVR+L+N I A+ G + +D+ T + E Sbjct: 478 QEVHPGVFDVFMSYQWPGNVRELENTIEYAVNMCSGSIIMERDLPKRLSRRQTESKDESF 537 Query: 457 MEGSLDEITSRFERSVLTQLYRNYPSTRK----LAKRLGVSHTAIANKLREYGLS 507 + ER + + + +T++ A LG+ + KL+ YG+ Sbjct: 538 RGIT---SIQELERKEMIKAIAYFGNTKQAITMAATALGIGRATLYRKLKIYGIK 589 >UniRef50_Q5WKW0 Transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WKW0_BACSK Length = 451 Score = 493 bits (1271), Expect = e-138, Method: Composition-based stats. Identities = 142/454 (31%), Positives = 228/454 (50%), Gaps = 36/454 (7%) Query: 83 SALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEP 142 A+L+A+ + +L +D + V N ++ G + ++ + L+ + Sbjct: 4 HAILDAIQDGILVIDKQGIVKKINNEYTRITGVCAQDIIGKPLLEVRPEAQLVSTLKDKS 63 Query: 143 QDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAA----- 197 +NG+ +L+++ P++ D+ + GAV + + + + + Sbjct: 64 VRVGVYR-KVNGREYLVDMAPIFDGDQ-----VVGAVSICKGKQEVLDLTKTIEQQKQQI 117 Query: 198 -----------QDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYA 246 Q F I+ + +K V A+K A P+LITG++GTGK+LFA A Sbjct: 118 QWLQQKVEASFQAAHHFESIIGYNQGLKEVTAIARKAATAPFPVLITGESGTGKELFAQA 177 Query: 247 CHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGFFEQANGGSVLLD 298 H+ A +P++ +NCA+IP D +ESELFG+ GK G FE A+ G++ LD Sbjct: 178 IHRGGKNASQPFVPINCAAIPTDLLESELFGYETGAFTGAQKNGKLGLFELADNGTLFLD 237 Query: 299 EIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYY 358 EIGE+ +Q+KLLR L +GT RR+G E V R+I AT +NL +LV KG+FREDLYY Sbjct: 238 EIGELPLSLQSKLLRVLQEGTIRRLGALKEKRVCTRIIAATNQNLADLVSKGLFREDLYY 297 Query: 359 RLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQ 418 RL V L++PPLR+ +DI L + +A +D + V + ++ + L Y WPGNVR+ Sbjct: 298 RLCVFQLHIPPLRERKEDIPLLAKTLLASQSDAKAVGQVNISDEALERLKHYHWPGNVRE 357 Query: 419 LKNAIYRALTQLDGYELRPQDIL--LPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQL 476 LKNA+ AL +D L P + L SL ER ++T + Sbjct: 358 LKNALQFALCMMDEPVLHPSHLPPHLATDQWQRSTPMSFTPPTSLKAGLEEAERQLITNV 417 Query: 477 YRNYPS----TRKLAKRLGVSHTAIANKLREYGL 506 N + ++ AKRL +S + NK++++ L Sbjct: 418 LANCDNHLEGKKQAAKRLNISLATLYNKMKKHRL 451 >UniRef50_A7GG75 Sensory box sigma-54 dependent transcriptional regulator n=10 Tax=Clostridium RepID=A7GG75_CLOBL Length = 584 Score = 493 bits (1270), Expect = e-138, Method: Composition-based stats. Identities = 132/483 (27%), Positives = 232/483 (48%), Gaps = 33/483 (6%) Query: 56 AEIRRIAGVTDVRTVPWMPSEREHLALSA-----------LLEALPEPVLSVDMKSKVDM 104 +I R+ V + + + + + + L +LE + E V + K V Sbjct: 102 NKIERLPIVHNRKIIGIVHLDDLNNELYTNVEELYALQDRILENMHEAVCITNNKGVVIY 161 Query: 105 ANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPV 164 N +S L+G K + L+ L++ + ++ + G+ ++ P+ Sbjct: 162 WNKSSEDLYGVKRQEIIGKYLGSFFPNALILKVLKNPRKITNVNNEPSPGKTVILSAVPI 221 Query: 165 Y------------LQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPK 212 + +D + L+ ++ + + +FS I+ S K Sbjct: 222 FNSKNKLIAVASTDRDITEVISLSKELMQEKKKVEFFESAYKKEIASNYSFSSIIGKSQK 281 Query: 213 MKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVE 272 + + A+K+A SA +LITG++GTGK++FA A H+AS R ++A+NC++IPE+ E Sbjct: 282 IIENIAIAKKVAPTSASVLITGESGTGKEVFAKAIHKASGR-TGNFVAINCSAIPENLFE 340 Query: 273 SELFGHA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVG 324 SELFG+ EGK G FE AN G++ LDEIG+M MQAKLLR L DG R+G Sbjct: 341 SELFGYVGGTFTGSLKEGKIGKFEFANNGTLFLDEIGDMPLSMQAKLLRVLQDGVVYRIG 400 Query: 325 EDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELF 384 V+ R++ AT ++L ++++ FREDL+YR V+ + LPPLR+ DI +LF Sbjct: 401 SQKGTKVNCRILAATNRDLQSMIKENTFREDLFYRFAVVHIELPPLRERRDDIKDFIDLF 460 Query: 385 VARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPD 444 + + ++++G+ + ++ +L Y W GN+RQLKN + R + E+ + Sbjct: 461 INQISEKEGIKINTIDKEVYDILCSYKWEGNIRQLKNVVERMVVLSTNGEVTISSVPNHI 520 Query: 445 YDAATVAVGEDAMEGSLDEITSRFERSVLTQLYR-NYPSTRKLAKRLGVSHTAIANKLRE 503 GE L+E+ E+ ++ ++ + +K A+ L + + + KL + Sbjct: 521 VQDVEEIEGESHHRYDLNEVVKNTEKKIIKEVMEITKGNKKKAAEILNIKRSTLYYKLNQ 580 Query: 504 YGL 506 Y L Sbjct: 581 YDL 583 >UniRef50_A9VII1 PAS modulated sigma54 specific transcriptional regulator, Fis family n=16 Tax=Bacillales RepID=A9VII1_BACWK Length = 553 Score = 493 bits (1269), Expect = e-138, Method: Composition-based stats. Identities = 136/453 (30%), Positives = 228/453 (50%), Gaps = 28/453 (6%) Query: 83 SALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLIN--GFNFLRWLES 140 + +++ V +D K V + ++F K + + + + L+ L Sbjct: 101 NTVIQTTDSSVTVIDEKECVRTWTDGAEKIFSVKHNEIIGQPITRFFDYKDLEILQSLHD 160 Query: 141 EPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVV---------MLRSTIRMGRQ 191 H L+ PVY DE V++ V + + M R Sbjct: 161 GKSIIAQFHQPRPDLFVLINSNPVYCNDEIIGAVVSETDVTNQVALNEKLFNMSHEMHRL 220 Query: 192 LQNVAAQDVSA--FSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQ 249 Q VA ++ F + SP ++ ++ A+K+ + + +LI G++G GK++FA A H+ Sbjct: 221 EQEVAKYKDTSDPFLAMNGKSPVIQRTIQLARKVCSVKSTVLILGESGVGKEVFAKAIHE 280 Query: 250 ASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIG 301 AS A P++++NC +IPE ESELFG+ +GKKG E A GG++ LDEIG Sbjct: 281 ASETANAPFISINCGAIPEALFESELFGYERGAFSGANSKGKKGKIELAQGGTLFLDEIG 340 Query: 302 EMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLN 361 EM MQ KLLR L + + RVG + E+++D R+I AT ++L E ++KG FREDLYYRLN Sbjct: 341 EMPLDMQVKLLRVLQERKYYRVGGEKEINIDFRIIAATNRDLQEEMRKGTFREDLYYRLN 400 Query: 362 VLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKN 421 V++L++PPLR+ +DI+ LT F+ F+ P L + + L Y WPGN+R+L+N Sbjct: 401 VVSLHIPPLRERREDIIELTYTFLNDFSINYNRPIRDLPSSIMHELLHYNWPGNIRELRN 460 Query: 422 AIYRALTQLDGYELRPQDIL------LPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQ 475 + R + ++ + + L + + ++ + + SL E E+ ++ + Sbjct: 461 VVERLVVFATDGIIKQEYLPFHTNDTLENETSHSLLLSNNNTILSLQEEMDEHEKKIIER 520 Query: 476 LYRN-YPSTRKLAKRLGVSHTAIANKLREYGLS 507 R + + AK+LGV+ + N+L+ GL Sbjct: 521 ALRILDGNKLECAKQLGVTRATLYNRLKRLGLQ 553 >UniRef50_C8VXU8 Putative sigma54 specific transcriptional regulator n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VXU8_DESAS Length = 710 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 147/530 (27%), Positives = 252/530 (47%), Gaps = 46/530 (8%) Query: 15 RELLDLLVLRGIDLRGIEIDPIGRIY----LNFAELEFESFSSLMAEIRRIAG----VTD 66 + +LD+L + +++ G++ + + F S S + + +I G + D Sbjct: 168 KNILDVLSTSNL----MDVIETGKVETLKKVKLNDRYFISNRSPIKKDGKIIGAVAVLQD 223 Query: 67 VRTVPWMPSE-----REHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLR 121 + + M E + L A++E+ + + D K + N A L G Sbjct: 224 ISELDKMSKELCYVKELNEELDAIVESSFDGLFITDGKGIILRYNKAFELLTGIDAHEYL 283 Query: 122 NHTAAQL----INGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTG 177 + + I + E + G+ L PV + V+ Sbjct: 284 GLSVEDIRRDGIISEPVTCHVLEEKKSITIMQTSKTGKLTLTTGNPVIDANGEIIRVVCN 343 Query: 178 AVVMLRS-------------TIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLA 224 + + QL+ + + ++ +V S KM+++++ +LA Sbjct: 344 VRDITELNLLKHKLKKAQGLSQHYENQLRTLKLRYDNS-ENLVVTSAKMRNLLDMVVRLA 402 Query: 225 MLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH------ 278 + + +LITG++GTGK+L A H S R KP++ +NC +IPE+ +ESELFG+ Sbjct: 403 SVDSTVLITGESGTGKELIAEIIHSNSSRRDKPFIKVNCGAIPENLLESELFGYDGGAFT 462 Query: 279 --APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVI 336 EGK G+ E A+GG++ LDEIGEM +Q K+LRFL + RVG + ++VDVR++ Sbjct: 463 GAKKEGKSGYIELASGGTLFLDEIGEMPLNLQVKMLRFLQNKEIIRVGGTNYINVDVRIV 522 Query: 337 CATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPR 396 AT +NL+E+VQ+ FREDLYYRLNV+ +++PPLRD DI PL F+ F + Sbjct: 523 TATNRNLLEMVQQKQFREDLYYRLNVVPVHIPPLRDRKDDIPPLAAHFIEVFNHKYKKN- 581 Query: 397 PKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDIL--LPDYDAATVAVGE 454 K++ + +L +Y WPGN+R+L+N I R + + +D+ L D + + Sbjct: 582 KKISPGVVDILMQYDWPGNIRELENLIERMVVTTMDDIITSEDLPSYLRDKVGISSSYII 641 Query: 455 DAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREY 504 + L + E+ +L + Y Y +TR++AK L V + + K +Y Sbjct: 642 VSGIVPLRDAVESVEKQLLERAYAKYRTTRQMAKELKVDASTVVRKAAKY 691 Score = 78.2 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 33/202 (16%), Positives = 81/202 (40%), Gaps = 19/202 (9%) Query: 22 VLRGIDLRG-IEIDPIGRIYLNFAELEFESFSS-------LMAEIRRIAGVT---DVRTV 70 + +GID+ +E I + + EF + ++ E R+ G+ D+ Sbjct: 56 ISKGIDMNTKVEALMTREILTGYPDDEFGDVVNATVPRLPVVDEKGRVVGIITRGDIAKA 115 Query: 71 PWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLIN 130 + L L ++ + ++SVD K + + N ++ +L G + + +++ Sbjct: 116 FFNSYRNISLELDTIMNSTHNAIVSVDEKGIIKVWNLSAARLLGIEAEAATGKNILDVLS 175 Query: 131 GFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGR 190 N + +E+ ++ + V +N + F+ +P+ + + GAV +L+ + + Sbjct: 176 TSNLMDVIETGKVETL-KKVKLNDRYFISNRSPIKKDGK-----IIGAVAVLQDISELDK 229 Query: 191 QLQNV--AAQDVSAFSQIVAVS 210 + + + IV S Sbjct: 230 MSKELCYVKELNEELDAIVESS 251 >UniRef50_A1HRA8 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRA8_9FIRM Length = 621 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 136/449 (30%), Positives = 217/449 (48%), Gaps = 33/449 (7%) Query: 76 EREHLAL-SALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNF 134 E+ +L +L+ + ++SV+ ++ + NP + +L + Sbjct: 189 EKAKASLFRTVLDFAYDGIISVNQDQRITIFNPIAERLTKIDGAAAIGKKITDIWPELGL 248 Query: 135 LRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRS-------TIR 187 + L + +D + + ++G L P+ + + GAV + R Sbjct: 249 EKVLTTG-RDELGQLLKVSGTRVLCNKVPIVVNGK-----PVGAVATFQDAGNIQQMEAR 302 Query: 188 MGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYAC 247 + R++ F IV SP+++H V AQ+ A + +LI G+TGTGK++FA + Sbjct: 303 IRREIYARGHVATFTFEDIVGDSPQIRHTVHIAQEFAQTHSSVLILGETGTGKEVFAQSI 362 Query: 248 HQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDE 299 H AS RA P++A+NCA++P +ESELFG+ +GK G FE A+GG++ LDE Sbjct: 363 HNASARANGPFVAINCAALPSQILESELFGYVGGAFTGASQKGKPGLFELAHGGTIFLDE 422 Query: 300 IGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYR 359 I EM Q KLLR L + R+G D + VDVRVI AT +NL LV++ FR DLYYR Sbjct: 423 IAEMDYVTQGKLLRVLQEKKVMRLGSDRVIPVDVRVIAATNQNLSRLVRENKFRADLYYR 482 Query: 360 LNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQL 419 LNVL L LPPLR+ DI+ E F+ + + Q L R+ WPGNVR+L Sbjct: 483 LNVLRLKLPPLRERGADIIRYAEFFLEKHSAAQNRRL-AFTPAALERLARHPWPGNVREL 541 Query: 420 KNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRN 479 +N I R + ++ + ED + ++ + E+ + Q Sbjct: 542 QNTIERIVAVCRQPQVDA---------GLVAQMLEDDADSGIEVAAADSEKEQIRQALAI 592 Query: 480 YPSTR-KLAKRLGVSHTAIANKLREYGLS 507 + + A+ LGVS + + K+++ GL Sbjct: 593 AKGKQGEAARLLGVSRSTLWRKMKKLGLR 621 >UniRef50_Q3ACI2 Sigma-54-dependent transcriptional regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ACI2_CARHZ Length = 589 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 144/509 (28%), Positives = 242/509 (47%), Gaps = 53/509 (10%) Query: 51 FSSLMAEIRRIAG-VTDVRTVPWMPSERE-------HLALSALLEALPEPVLSVDMKSKV 102 S++ E+ R+ V V+TV ++ L A++E+ + + D K Sbjct: 74 VESIIEEVDRLDDLVIKVKTVKISSLLKKIKELSFLQEELEAIIESSYDGIYVSDCTGKT 133 Query: 103 DMANPASCQLFGQKLDRLRNHTAAQL-----INGFNFLRWLESEPQDSHNEHVVINGQNF 157 N A ++ G K D + +L + + + ++ + + + + N + Sbjct: 134 LRINKAYERITGIKKDEVIGRRLDELKAEGYFSEIVYKQVVKEKRPVTILQKI-KNEKEV 192 Query: 158 LMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSA--------------- 202 ++ PV + V+T V + + R+L V + Sbjct: 193 VVTGNPVLDNSGEVKRVVTN-VRDISELNMLRRELAEVKEKSKHYQRKIVELQEKLTLFC 251 Query: 203 -----FSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKP 257 F + SP MK V+ +A ++A +LI G++GTGK++ A H S R K Sbjct: 252 QAQQDFKGFIIKSPLMKDVIYKALRVARTDTTVLIIGESGTGKEVIARFIHFNSLRKDKA 311 Query: 258 YLALNCASIPEDAVESELFGHAPE--------GKKGFFEQANGGSVLLDEIGEMSPRMQA 309 +L +NC +IPE+ +ESE FG+ P GK GFFE A GG++ LDE+GE+ +Q Sbjct: 312 FLPVNCGAIPENLMESEFFGYEPGAFTGALKTGKMGFFELAQGGTLFLDEVGELPLHLQV 371 Query: 310 KLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPP 369 KLLR L R+G + VDVR+I AT +NL +LV++G FREDLYYRLNV+++ +PP Sbjct: 372 KLLRALQTKEIMRLGSTKPIKVDVRIIAATNRNLAKLVEEGKFREDLYYRLNVISIEIPP 431 Query: 370 LRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQ 429 LR ++I+P+ F+ R ++ G K ++ +L Y WPGN+R+L+N I A Sbjct: 432 LRKRKEEIIPMAMEFLTRINEKYGSE-KKFTREVLEILKEYKWPGNIRELENVIEHAYVV 490 Query: 430 LDGYELRPQDILL--------PDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYP 481 E+ +D+ + P A ++ +LDE S E+ ++ Y Sbjct: 491 SQ-DEINVEDLPIHLDSLYGEPGNIALIRKTLQNRENITLDEAISLVEKKLIEDALLKYG 549 Query: 482 STRKLAKRLGVSHTAIANKLREYGLSQKK 510 + + A LGV+ + I+ K+++Y + KK Sbjct: 550 TETRAASVLGVNQSTISRKIKKYNIDVKK 578 >UniRef50_C0QF87 Transcriptional regulator (PAS/PAC domain protein) n=2 Tax=Bacteria RepID=C0QF87_DESAH Length = 710 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 132/477 (27%), Positives = 227/477 (47%), Gaps = 36/477 (7%) Query: 62 AGVTDVRTV--PWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDR 119 +TD+ + + + L +++E + ++ +D K + MAN + + + Sbjct: 238 QDLTDLECIASELESVTKLYNTLQSVMEIAYDGIIVIDKKGVITMANQSIADFLHKSREN 297 Query: 120 LRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAV 179 + +I + +++ + H + ING ++ P+ + V Sbjct: 298 MVGKPVEDIIENSRLRKVIKTGVAELH-QLQFINGNPHVVSRMPIVRDGKALGAVGMILF 356 Query: 180 VMLRSTIRMGRQLQNVAAQDVS-------------AFSQIVAVSPKMKHVVEQAQKLAML 226 + + ++ + + F QI+ K + E+A+ A Sbjct: 357 SNFKDVRNLAQKFIRLDQKVAYYKNQIRNDMSNKITFDQIITSHEAFKKIKERAEIAAQS 416 Query: 227 SAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA------- 279 S+ +LITG++GTGK+L A + H+A K + +NCA+IP D +ESE FG+A Sbjct: 417 SSSILITGESGTGKELMAQSIHEAGVSRDKRLVKVNCAAIPADLLESEFFGYAPGAFTGA 476 Query: 280 -PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICA 338 +GK G A+GG++ LDEIG+MSP +Q+KLLR L D +F +G + HV RVI A Sbjct: 477 QKQGKLGKLALADGGTLFLDEIGDMSPNLQSKLLRVLQDKSFEPIGSNKTTHVSFRVIAA 536 Query: 339 TQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPK 398 T ++L ++VQ+ FR DLYYRLNV+ ++PPLR+ PQDI+ L F+ ++ G Sbjct: 537 TNQDLHQMVQEKRFRGDLYYRLNVIHFHIPPLRERPQDIILLVHFFIEKYNHILGSAIQD 596 Query: 399 LAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILL---------PDYDAAT 449 ++ D TVL + WPGNVR+L+N + R + G + D+ P + A + Sbjct: 597 ISDDAMTVLLEHTWPGNVRELENVVERVANFVKGNLVDIDDLPPNLKEKEKKSPSFMAGS 656 Query: 450 VAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 + + S D+ +S L + + K AK LG+S + + K+ + L Sbjct: 657 PLSTKQRLHKSRDDHDKLAIQSALREAD---GNKAKAAKILGISRSWLYTKMARFDL 710 Score = 69.3 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 40/109 (36%), Gaps = 6/109 (5%) Query: 81 ALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLES 140 + +L ++ V+++D K+ N A+ +LFG + + + G L Sbjct: 142 QMQIILNSMHNGVVAMDASGKISRINQAAERLFGITTFQAWGKPVSLFLKGLELDEVLL- 200 Query: 141 EPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMG 189 + S L ITP+ D + GA+++ + + Sbjct: 201 KGVVSIGIKSTYGEHTLLCNITPIMTMD-----NINGAIIIFQDLTDLE 244 >UniRef50_C4FI59 AAA family ATPase n=1 Tax=Sulfurihydrogenibium yellowstonense SS-5 RepID=C4FI59_9AQUI Length = 531 Score = 491 bits (1264), Expect = e-137, Method: Composition-based stats. Identities = 132/467 (28%), Positives = 238/467 (50%), Gaps = 33/467 (7%) Query: 47 EFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMAN 106 E F+ ++ EIR V + + E+E L +L+++ + ++ VD + K+ N Sbjct: 90 ENGEFAGIIEEIRDSTKVNQY--IEIIKKEKEFSHL--ILDSVIDAIVVVDNQGKIINYN 145 Query: 107 PASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYL 166 + L + ++ + LI L+ L S +D G+ ++++ V+ Sbjct: 146 QNAKNLL-CREVDIKGMNLSLLIK--KDLKELPSSREDI-IIETPAYGK---IKVSAVFT 198 Query: 167 QDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAML 226 + ++ + + V+ ++ + S S+++ S M +V++ A+ +A Sbjct: 199 RLKSGEGSIFSFYVVPDCM---------LSQEAASNKSRLITKSSLMVYVLDIAKTVADT 249 Query: 227 SAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH-------A 279 +A +L+ G++GTGK++ A H S R KP++ +NCA+IP++ +ESELFG+ A Sbjct: 250 TANVLLEGESGTGKNVLAKYIHNQSSRRDKPFVKINCAAIPDNLLESELFGYVKGAFTGA 309 Query: 280 PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICAT 339 + K G E A+GG++ LDEIGE+ +Q+KLL + + F R+G+ VDVR+I AT Sbjct: 310 VKDKPGKVELADGGTLFLDEIGELPTYLQSKLLHLIQEKEFERLGDTKTKKVDVRIIAAT 369 Query: 340 QKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKL 399 K+L +LV++G FREDLYYRL V+++ +P LR+ +DI L F+ ++ + + Sbjct: 370 NKDLSQLVKEGKFREDLYYRLKVISIKVPALRERKEDIPFLINYFIDLYSKQYNKHIKGI 429 Query: 400 AADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEG 459 + + +L Y +PGN+R+L+N I RA+ G + D+ + D Sbjct: 430 SPEAVRLLLNYDYPGNIRELENIIERAVILAKGKFIEVSDLPDEIVYNTKILTQND---- 485 Query: 460 SLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 LDE ++ +L L + K AK L + + KL++YGL Sbjct: 486 -LDEEIDE-KQKILRVLESVNWNKSKAAKILNIDRVTLWRKLKKYGL 530 Score = 43.1 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 21/138 (15%), Positives = 43/138 (31%), Gaps = 27/138 (19%) Query: 85 LLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQD 144 LL L V+ VD ++ N + + K Q + P D Sbjct: 5 LLNNLSTGVIFVDKNKEIKYVNKTAKDILNIKE--------GQSCKNLKMFDICKKCPID 56 Query: 145 SHNEHVVIN------------GQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQL 192 +N+H + PV+ E G + +R + ++ + + Sbjct: 57 YYNKHSTFPEFEDFNITLSCCSKKVCYSFKPVFENGE-----FAGIIEEIRDSTKVNQYI 111 Query: 193 QNVAAQDVSAFSQIVAVS 210 + + + FS ++ S Sbjct: 112 EIIKKEKE--FSHLILDS 127 >UniRef50_C1DNV1 Sigma54-dependent activator protein n=8 Tax=Gammaproteobacteria RepID=C1DNV1_AZOVD Length = 667 Score = 490 bits (1263), Expect = e-137, Method: Composition-based stats. Identities = 151/434 (34%), Positives = 215/434 (49%), Gaps = 14/434 (3%) Query: 83 SALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEP 142 LLE L E ++ +D + + N + QLF + D L +L G L Sbjct: 230 RTLLEVLNEGLVVLDERGCIKALNRYARQLFRVERD-LLGAPFHRLGRGERVDSLLLRAD 288 Query: 143 QDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNV-AAQDVS 201 + H+ + + L + T + G +V LR R+ + + Q Sbjct: 289 EGLHDLDITLQ----LHDGTHLSCLASVCPTERGGRIVSLRENRRIREITRRIIGTQASY 344 Query: 202 AFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLAL 261 F I+ S M+ + A+ + + LI G++GTGK+LFA A H AS R G P++A+ Sbjct: 345 TFETILGGSRAMQDTLRLARIASRGDSTTLILGESGTGKELFAQAIHNASERCGGPFVAV 404 Query: 262 NCASIPEDAVESELFGH--------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLR 313 NC +IP D V+SELFG+ A G G FE A+GG++ LDEIG+M QA LLR Sbjct: 405 NCGAIPRDLVQSELFGYIEGAFTGSARGGSAGKFELADGGTIFLDEIGDMPFDAQASLLR 464 Query: 314 FLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDC 373 L +G RVG VDVR++ AT +NL V G FREDLYYRLNVL+L++PPLR Sbjct: 465 VLQEGEVTRVGAKRSQPVDVRIVAATNRNLSRAVADGSFREDLYYRLNVLSLSVPPLRMR 524 Query: 374 PQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGY 433 +DI L + F+ R A P + + +L +AWPGNVR+L+N I RA G Sbjct: 525 REDIPTLAQHFLERCARSLRKPVRGIVREALDILMAHAWPGNVRELENTIERAANLAGGE 584 Query: 434 ELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVS 493 + +D+ L A A G+ ++ S ++ L + R AKRLGVS Sbjct: 585 LIEAEDLPLELAQVARRAAEPAVRCGAAMDLGSHEMNAIAAALRECRGNVRLAAKRLGVS 644 Query: 494 HTAIANKLREYGLS 507 + NK+ YGLS Sbjct: 645 RGGLYNKMNRYGLS 658 >UniRef50_Q0AVM6 Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains-like protein n=4 Tax=Bacteria RepID=Q0AVM6_SYNWW Length = 935 Score = 490 bits (1263), Expect = e-137, Method: Composition-based stats. Identities = 138/505 (27%), Positives = 232/505 (45%), Gaps = 38/505 (7%) Query: 33 IDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSE------REHLALSALL 86 + G+ L + F+ ++M + V D+ + + E L A+ Sbjct: 438 VTRTGKEVLVTSTPIFDDQGNIM---LVVTNVRDITELNELEREFKKMVGLRERELDAVF 494 Query: 87 EALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLR---WLESEPQ 143 E+ + + D ++ N A ++ G K + +L+ + R L E Q Sbjct: 495 ESSYDGLYITDGEANTLRLNEAFERILGVKAEECIGRNMRELVAEGVYSRSGTLLALEKQ 554 Query: 144 DSHNEHVV-INGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVA-AQDVS 201 D + G+ L+ TP+ + N + V +R + + + A+++S Sbjct: 555 DQVTITLQAKTGKTALVTSTPIRDEHGN----IILVVTNVRDISELNELQEKLGHAEELS 610 Query: 202 AF-----------SQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQA 250 F +Q V S KM+ ++ ++A + + +LI G++G GK+L A H Sbjct: 611 RFFQSELQEMKLRTQCVIHSSKMRELISMVVRIAAVDSTVLIQGESGVGKELVANTIHSN 670 Query: 251 SPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGE 302 S R +P + +NC +IPE+ +ESELFG+ +GK G FE A+ G + LDEIG+ Sbjct: 671 SNRREQPMIKINCGAIPENLLESELFGYEPGAFTGASKQGKVGMFEVADQGILFLDEIGD 730 Query: 303 MSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNV 362 + +Q KLLR L D RVG + VDVR+I T NL E+V+K +FR+DL+YRLNV Sbjct: 731 LPLSLQVKLLRVLQDKEILRVGGTKPIKVDVRIIAGTNYNLKEMVEKKLFRKDLFYRLNV 790 Query: 363 LTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNA 422 + + +PPLR+ +DI L F+ F + G+ KL+ + Y WPGNVR+L+N Sbjct: 791 IPITVPPLRERREDIPILANHFLDNFNQKHGMN-KKLSGSILAYFMEYDWPGNVRELENL 849 Query: 423 IYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPS 482 + R + + D+ + L + ER +L + S Sbjct: 850 VERLVVTSLNQTITAHDLSAWSELKPENKSDNEHGIVRLQDALENTERRILENAFSVCKS 909 Query: 483 TRKLAKRLGVSHTAIANKLREYGLS 507 T ++A+ LG+S + K +YG+ Sbjct: 910 TYEVARALGISQPTVVRKAAKYGIR 934 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 23/157 (14%), Positives = 54/157 (34%), Gaps = 21/157 (13%) Query: 61 IAGVTDVRTVPWMPSEREH-----LALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQ 115 I V D+ + + +H L +L++ + + D ++ N A ++ G Sbjct: 340 ITNVRDITELNELERRLKHIGLRDRELDTILDSSFDGIFITDGEANTLRLNQAFERITGV 399 Query: 116 KLDRLRNHTAAQLINGFNFLR----WLESEPQDSHNEHVVINGQNFLMEITPVYLQDEND 171 +L++ F + + + + V G+ L+ TP++ +D Sbjct: 400 TAQECVGRNMKELVDEGYFSGSGTLLVLEKRERATITLVTRTGKEVLVTSTPIF----DD 455 Query: 172 QHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVA 208 Q + V +R + + F ++V Sbjct: 456 QGNIMLVVTNVRDITELNELERE--------FKKMVG 484 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 31/210 (14%), Positives = 77/210 (36%), Gaps = 21/210 (10%) Query: 17 LLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRRIAG----VTDVRTVPW 72 + D+ ++ + + + + + + + RIAG + D+ + Sbjct: 169 VTDIFTNSKLNEVLTTGQTQATRKIQYQDKILLTNRTPLYKNGRIAGAVAVLQDISELEH 228 Query: 73 MPSE----RE-HLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQ 127 + E RE + L A+ E+ + + D + N ++ G ++ + Sbjct: 229 IAEELARTRELNRQLDAIFESSFDGLYLTDGEGNTLRLNQGFVRITGISMEECVGSNMRE 288 Query: 128 LINGFNFLR----WLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLR 183 L++ F + + + V G+ L+ TP++ + N ++T V + Sbjct: 289 LVDTGVFSDSGTLLALEKQERTTITLVARTGKEVLVTSTPIFDEQGNIAFIITN-VRDIT 347 Query: 184 STIRMGRQLQNVAAQDV-------SAFSQI 206 + R+L+++ +D S+F I Sbjct: 348 ELNELERRLKHIGLRDRELDTILDSSFDGI 377 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 49/135 (36%), Gaps = 7/135 (5%) Query: 77 REHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLR 136 + A ++ PV+S+D + ++++ N A + G R + Sbjct: 121 KNASEWEACFNSIYNPVISIDGEGRINLLNRALEKSTGISASEARGKKVTDIFTNSKLNE 180 Query: 137 WLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVA 196 L + + + + + L TP+Y + GAV +L+ + + +A Sbjct: 181 VLTTGQTQATRK-IQYQDKILLTNRTPLY-----KNGRIAGAVAVLQDISELEHIAEELA 234 Query: 197 A-QDVSAFSQIVAVS 210 ++++ + S Sbjct: 235 RTRELNRQLDAIFES 249 >UniRef50_Q0AWA7 Acetoin operon expression regulatory protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWA7_SYNWW Length = 671 Score = 490 bits (1263), Expect = e-137, Method: Composition-based stats. Identities = 137/451 (30%), Positives = 224/451 (49%), Gaps = 25/451 (5%) Query: 80 LALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLI-NGFNFLRWL 138 L + + + ++ +DM+ + NPA ++ GQ ++ +L G L Sbjct: 222 NRLGYIYNTVSDGIMVIDMQGIITQINPAVERILGQNSRKIMGIPVKELFEPGQRVEEML 281 Query: 139 ESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVA-A 197 +S S++E + G+ ++ + DE Q + G V+ + + + + A Sbjct: 282 DSGRDFSYSELTLGIGEAVQCLVSGKAIMDE--QGKVNGGVIFINPINHIKSLVNRFSGA 339 Query: 198 QDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKP 257 Q FS I+ S ++ VV A A + +L+ G++GTGK++FA A H AS R P Sbjct: 340 QASLHFSDIIGQSQELSRVVRIASLAASSESNILLEGESGTGKEVFAQAIHNASSRRDAP 399 Query: 258 YLALNCASIPEDAVESELFGHAPE--------GKKGFFEQANGGSVLLDEIGEMSPRMQA 309 ++A+NC +IP + + SELFG+ G+ G FE A+GG++ LDEIGEM Q Sbjct: 400 FIAVNCGAIPRELLGSELFGYVDGAFTGARRGGRPGKFELASGGTIFLDEIGEMPLGKQV 459 Query: 310 KLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPP 369 LLR L + T R+G D + VDVRVICA+ + L E V+KG FR DL+YRLNV+ + LPP Sbjct: 460 SLLRVLQERTVTRIGGDKVIPVDVRVICASNRKLHEEVEKGNFRRDLFYRLNVIAITLPP 519 Query: 370 LRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQ 429 LR +DI L F+ + + GV P++ ++ L Y WPGNVR+L+N + R + Sbjct: 520 LRQRKEDIPLLFHHFLQDISQKLGVKTPQVETEVIHSLQDYDWPGNVRELQNVVERMVNI 579 Query: 430 LDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERS-------------VLTQL 476 + + + + A ++ E A ++ ER ++ L Sbjct: 580 AEESRISREHLPQEISHPAARSLKELANCEDSQLLSLSTERRKRKEMEQEREQEEIMALL 639 Query: 477 YRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 + + ++AK LGVS I K+++Y + Sbjct: 640 VLHGGNVSQVAKSLGVSRNTIYRKIKQYRIK 670 >UniRef50_A6LVD4 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LVD4_CLOB8 Length = 689 Score = 489 bits (1261), Expect = e-137, Method: Composition-based stats. Identities = 151/554 (27%), Positives = 266/554 (48%), Gaps = 59/554 (10%) Query: 3 LEVFCEDRLGL-TRELLDLLVLRGID------LRGIEIDPIGRIYLN----FAELEFESF 51 L + D +G E+++ L I+ L EI + +N + + + Sbjct: 144 LGISSGDAIGKKVYEIIEFTNLHEINRTGKSELMVKEIINNRILLINRTPIIIDKKPKGA 203 Query: 52 SSLMAEIRRIAGVTD-VRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASC 110 ++ +I ++ V D ++TV + +E L L +LE + + + ++ + N A Sbjct: 204 LAVFNDISKLEKVKDELKTVKDL---KERLQL--ILETVQDGICVINSDGYITYVNKAYL 258 Query: 111 QLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDEN 170 ++ +K + + N + ++ L++ NG + + P+ + E Sbjct: 259 RILNEKEEDILNKNIRDVSPEGARIKVLKTGESIIGAISYKENGVIIVSNVNPIVIDGE- 317 Query: 171 DQHVLTGAVVMLRSTIRMGRQLQNVA----------------AQDVSAFSQIVAVSPKMK 214 +TG V ++++ + + + + + SAFS+ + S K+ Sbjct: 318 ----ITGVVSIVKNVTEVQKLSEKLTQVSAKADYLEEELMRTKKPDSAFSKYIGHSGKIL 373 Query: 215 HVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESE 274 + K A +LI G++GTGK+L A H +S + P++ +NCA+IP++ +ESE Sbjct: 374 DALATTLKAAKTDTTVLIRGESGTGKELIAEGIHFSSKNSKGPFIRVNCAAIPQNLLESE 433 Query: 275 LFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDH 327 LFG+ A + K G FE A G++LLDEIGEM MQAK+LR + + F+R+G + Sbjct: 434 LFGYEKGAFTGAIKRKLGKFELAQNGTILLDEIGEMDKSMQAKVLRVIQEKEFQRIGGEE 493 Query: 328 EVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVAR 387 + ++VR+I AT +NL E+V+ FREDLYYRLNV+ + LPPLR+ QDI PL E F+ + Sbjct: 494 TIKINVRIIAATHRNLEEMVKSMEFREDLYYRLNVIPIFLPPLRERKQDIAPLLEHFIDK 553 Query: 388 FADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDA 447 + D L Y WPGN+R+L+N + R + + + D LP Y Sbjct: 554 IGKRINKRITVVTNDAMESLLEYKWPGNIRELENLVERIMALNETEVIELSD--LPAYMR 611 Query: 448 ATVAVGEDAMEGS----------LDEI--TSRFERSVLTQLYRNYPSTRKLAKRLGVSHT 495 + ++A++ DEI +E+ ++ + + Y S K LG++H Sbjct: 612 KDINTVKNAIKSKNNNEIDMLIETDEILPLKEYEKIIIEKALKKYGSYNAAGKALGLTHK 671 Query: 496 AIANKLREYGLSQK 509 +A K R+YG+ +K Sbjct: 672 TVAAKARQYGIEKK 685 Score = 65.5 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 27/205 (13%), Positives = 72/205 (35%), Gaps = 12/205 (5%) Query: 13 LTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFE-SFSSLMAEIRRIAGVTDVRTVP 71 + ++ +L + L +++ +I + + + + L ++ + D T+ Sbjct: 41 IYKDKKKILATSLMPLVLLKVKQNEKIIVEVHGEDPKNALDELCDFLQSDFDLEDKSTIN 100 Query: 72 WMPSEREHLA--LSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLI 129 + + + L + +P +++ D K + + N + +L G ++I Sbjct: 101 QVDNIINNNTITLEHVFSNIPNGIIATDEKDIISIFNEEAERLLGISSGDAIGKKVYEII 160 Query: 130 NGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDE--------NDQHVLTGAVVM 181 N + + + + IN + L+ TP+ + + ND L Sbjct: 161 EFTNLHEINRTGKSELMVKEI-INNRILLINRTPIIIDKKPKGALAVFNDISKLEKVKDE 219 Query: 182 LRSTIRMGRQLQNVAAQDVSAFSQI 206 L++ + +LQ + I Sbjct: 220 LKTVKDLKERLQLILETVQDGICVI 244 >UniRef50_C7LR14 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LR14_DESBD Length = 476 Score = 488 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 127/450 (28%), Positives = 218/450 (48%), Gaps = 27/450 (6%) Query: 83 SALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQL----------INGF 132 +++ + E +L VD + M N A ++ G D L + Sbjct: 28 HEIVDIMQEGLLLVDPDGSIKMVNRALEEITGYTRDELIGANCSLFKCDACRRVRSEARQ 87 Query: 133 NFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQL 192 + + E ++ ++ + + D + GAV + + R+ Sbjct: 88 AWCKLFEQGVYVRRKCSIMRKDGTYVPILKSASILHAEDGSTV-GAVETMTDLSELDRKE 146 Query: 193 QNVAA-----QDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYAC 247 + + + F +V S +M+ V +K A AP+ I G++GTGK+L A A Sbjct: 147 NELQQLSRMLDEETMFHGMVGHSAQMRRVFHLIEKAAQSDAPVFIYGESGTGKELVARAI 206 Query: 248 HQASPRAGKPYLALNCASIPEDAVESELFGHAPEG-------KKGFFEQANGGSVLLDEI 300 H PR+ +PY+ NCA++ E +ESELFGH ++G FE A+GG + LDEI Sbjct: 207 HDLGPRSDQPYVQFNCAALNEALLESELFGHVKGAFTGAFRHRQGRFEAAHGGDIFLDEI 266 Query: 301 GEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRL 360 G++ +Q KLLR L TF RVG++ ++ VDVR+I AT K L EL+ +G FREDL+YR+ Sbjct: 267 GDLPMPVQVKLLRVLETKTFERVGDNRQLSVDVRIITATNKVLPELISQGQFREDLFYRI 326 Query: 361 NVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLK 420 NV+ ++LP LR+ +DI L + F+ R + L+ + Y+WPGNVR+LK Sbjct: 327 NVIPVHLPSLRERKEDIPLLADYFIQRLRMKSDKDIKGLSPQTLRLFMDYSWPGNVRELK 386 Query: 421 NAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNY 480 +++ A D + P+ LP T + G+ + R + ++ L++ Sbjct: 387 SSLEYAFVLADHGHIEPEH--LPHNVVVTAPPVAEPRYGNPGHDSQR--QQLVQALHQAG 442 Query: 481 PSTRKLAKRLGVSHTAIANKLREYGLSQKK 510 + + A+ LG++ + N++R++G+ + Sbjct: 443 GNKSEAARILGINRVTVLNRMRKHGIDMTR 472 >UniRef50_A1HLP6 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Firmicutes RepID=A1HLP6_9FIRM Length = 635 Score = 488 bits (1257), Expect = e-136, Method: Composition-based stats. Identities = 138/464 (29%), Positives = 232/464 (50%), Gaps = 30/464 (6%) Query: 58 IRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKL 117 ++ I ++ V ER L ++ + + ++++D ++ + NP + ++FG Sbjct: 173 VQAIHDAENIAEVRISERERAEL-FRIIVNSSHDGIIAIDDAERITLFNPVAEKVFGIPA 231 Query: 118 DRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTG 177 I N R L + E + + + + + + + G Sbjct: 232 AAAVGAKIRDKIPNTNLPRILRQGGSE-DGELQYVGEKVIVTQRFAIKVNG-----RVVG 285 Query: 178 AVVMLRSTIRMGRQLQNVAAQ-------DVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPL 230 AV R + R + V + + I+ S +K ++E+A+K A + A + Sbjct: 286 AVANFRDVTELQRLERLVRQKLHAKGLVARIRLADIIGESAALKGLIERARKFAAVDATV 345 Query: 231 LITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEG 282 LI G+TGTGK++ A H AS RA P++A+NCA++PE+ +ESELFG+A G Sbjct: 346 LIVGETGTGKEMLAQGIHNASHRANGPFVAVNCAALPENLLESELFGYAEGAFTGAKKGG 405 Query: 283 KKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKN 342 K G FE A+GG++ LDEI EM +Q++LLR L + R+G D + VDVR+I A+ +N Sbjct: 406 KPGLFELAHGGTIFLDEISEMPLPLQSRLLRVLQEREVLRIGGDRIIPVDVRIIAASNRN 465 Query: 343 LVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAAD 402 L LV+KG+FR+DLYYRL++LTL PPLR+ +DI L F+ + + + + Sbjct: 466 LRNLVEKGLFRDDLYYRLHLLTLTAPPLRERKEDIPLLVRAFLRKHSH-LNPLVSDIDSL 524 Query: 403 LNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDI--LLPDYDAATVAV--GEDAME 458 +L Y WPGNVR+L+NAI R + + + + LL + G+ Sbjct: 525 AVQLLAEYEWPGNVRELENAIQRLIILSEEQIIGKAAVSALLEELQGGQTLPFRGKQQAA 584 Query: 459 GSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLR 502 SL ++ +++ +VL + + + AKRLG+ + + KLR Sbjct: 585 PSLADLEAQYIAAVLAE---ENNNKSRAAKRLGIDRSTLWRKLR 625 >UniRef50_A4J1E1 Transcriptional regulator n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J1E1_DESRM Length = 468 Score = 488 bits (1257), Expect = e-136, Method: Composition-based stats. Identities = 126/447 (28%), Positives = 213/447 (47%), Gaps = 26/447 (5%) Query: 85 LLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQD 144 L++ E + V+ V + + ++ + LE+ Sbjct: 21 LIDNPYEGFIVVNKDGFVTFISNLYLDTINLTREDTIGKHITEVHENTKLTQVLETGKPI 80 Query: 145 SHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVM--------------LRSTIRMGR 190 S++ G ++ P+ + + AV + L + R Sbjct: 81 SYDYWETK-GMTLIVVRFPILNNAGDLIGAVGKAVFVDIPSGKTLANKLKQLEKEVEFYR 139 Query: 191 QLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQA 250 Q F+ ++ S +K V + AQK+A+ + +LITG++GTGK+LFA A H A Sbjct: 140 QELYKFYNAKYTFNDMIGESDAIKKVKKIAQKIALSESTVLITGESGTGKELFAQAIHNA 199 Query: 251 SPRAGKPYLALNCASIPEDAVESELFGHAPEG--------KKGFFEQANGGSVLLDEIGE 302 S R+ P++ +NCA++PE+ +E+ELFG+A K G FE A GG++ LDEIGE Sbjct: 200 SYRSRFPFVRINCAAVPENLLEAELFGYAEGAFTGAKKGGKPGKFELAQGGTIFLDEIGE 259 Query: 303 MSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNV 362 + MQ+KLL L + RVG V VD RVI AT +NL ++V++G FR+DLYYRLNV Sbjct: 260 LPLSMQSKLLNVLQEREIERVGGIRTVSVDFRVIAATNRNLEDMVKEGTFRDDLYYRLNV 319 Query: 363 LTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNA 422 ++L +P LR+ DI L F + ++ + + VL+++ WPGN+R+L+N Sbjct: 320 ISLKIPSLRERQDDIPLLVNYFTDKLNNKLKCSVERFTEEAMLVLSKHYWPGNIRELQNT 379 Query: 423 IYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPS 482 + R D + LP + +LDE+ + E+ ++ N Sbjct: 380 LERVFILSDDNIISVNH--LPFSIKMRKGNIIQSKRLTLDEMIDQTEKRIILDTLSNVKD 437 Query: 483 TR-KLAKRLGVSHTAIANKLREYGLSQ 508 R A+ LG+ +++ K++++G+ + Sbjct: 438 DRIAAAELLGIHLSSLYRKMKKHGIKK 464 >UniRef50_C2W7W3 Transcriptional regulator n=4 Tax=Bacillus RepID=C2W7W3_BACCE Length = 617 Score = 487 bits (1254), Expect = e-136, Method: Composition-based stats. Identities = 130/516 (25%), Positives = 225/516 (43%), Gaps = 30/516 (5%) Query: 17 LLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSE 76 ++D +G L +E+ Y+ + ++ + + + Sbjct: 106 IIDKSFHKGSSLNAMEVIQHVPFYV--INEKNGVLEGIIGQ-NELFAFQKYMKQQLEEAR 162 Query: 77 REHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLR 136 L + E + VD + M N + G + A +I Sbjct: 163 HVIEWLRLSFDTAYEGIAIVDENGVIQMFNDTYSRFVGVTKEEAIGQRAENVIENTRLPV 222 Query: 137 WLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHV----------LTGAVVMLRSTI 186 L++ + + H + GQN ++ P++ Q V + + Sbjct: 223 VLKTGVPERNQVH-RLQGQNLVVHRMPIWKQGRVIGAVGMLIHEGISDIYKILERFDQKD 281 Query: 187 RMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYA 246 + L + + F I+ S + + A+K A A +LITG++G GK+ FA A Sbjct: 282 GAVKPLFSKPKKKQIHFEDILGESQPISETKKMARKAARSKASVLITGESGVGKEQFARA 341 Query: 247 CHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLD 298 H A P++++NCA+IP++ +ESELFG+A GK G FE AN G++ LD Sbjct: 342 IHGAGVTNNGPFISVNCAAIPDNLLESELFGYAEGAFTGAKKNGKAGKFELANHGTLFLD 401 Query: 299 EIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYY 358 EIG+MS Q K+LR L + R+G H + VD R+I AT K+L ++V++G FREDLY+ Sbjct: 402 EIGDMSLLTQVKILRVLQEREIERIGGTHPIPVDFRLIAATNKDLKQMVREGTFREDLYH 461 Query: 359 RLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQ 418 RL+V+ + +PPLR QDI + E + + L ++ ++ Y WPGNVR+ Sbjct: 462 RLHVIPIQIPPLRFRKQDIPLIVEEHLQKLCQMYNAEEKTLDKEVLRLMFHYNWPGNVRE 521 Query: 419 LKNAIYRALTQLDGYELRPQDIL-------LPDYDAATVAVGEDAMEGSLDEITSRFERS 471 L N + R D +R +D+ + + A + ++ + ER Sbjct: 522 LINVLERLFALSDDVHIRAKDLPEEFYYRDMEQKKLVPMIQSLPAKQEAMKVVRDEEERG 581 Query: 472 VLTQLYRN-YPSTRKLAKRLGVSHTAIANKLREYGL 506 ++ ++ + + K A LG+S + NKL + + Sbjct: 582 LIERVLKEAKGNKSKAAALLGISRATLYNKLSRFKI 617 >UniRef50_A7GID7 Sigma-54 dependent transcriptional regulator n=10 Tax=Clostridium RepID=A7GID7_CLOBL Length = 542 Score = 487 bits (1254), Expect = e-136, Method: Composition-based stats. Identities = 138/485 (28%), Positives = 236/485 (48%), Gaps = 41/485 (8%) Query: 45 ELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDM 104 ++++ +S + +I+ V DV ++ +L + E ++ VD + M Sbjct: 75 TIDYKLYSEMKKDIKYYKSVLDV--------------VNKVLYTINECIVVVDQNGIIIM 120 Query: 105 ANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITP- 163 + + K +I R L++ +S E ING+ + P Sbjct: 121 MSECYKKFINCKDPE--GKYVGDVIKDTMLHRVLKTGNIES-GEVQKINGKQVITMRIPL 177 Query: 164 ------------VYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSP 211 + +D ND + L G + ++T + + F IV S Sbjct: 178 KKEGRIIGAIGKIMFKDVNDFYFLYGKLNKSKNTHKCYDNKSEKNRRAKYFFKDIVGDSS 237 Query: 212 KMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAV 271 + ++ A+K A ++ +LI G++GTGK+L+A++ H AS R P++ +NC +IP + + Sbjct: 238 ESNNIKSLAKKSANTNSNVLIVGESGTGKELYAHSIHNASNRRLGPFIKINCGAIPAELL 297 Query: 272 ESELFGHAPEGKKG--------FFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRV 323 ESELFG+ G FE ANGG++ LDEIG+M MQ KLLR + + +V Sbjct: 298 ESELFGYEDGAFTGAKKGGKKGKFELANGGTIFLDEIGDMPMCMQVKLLRVIQEREVEKV 357 Query: 324 GEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTEL 383 G + +DVR+I AT KNL +LV+K FREDLYYRLNV+ +N+P LR+ +DI+ +++ Sbjct: 358 GGNILKKIDVRIIAATNKNLEKLVEKNKFREDLYYRLNVIRINVPSLRERKEDILLISDF 417 Query: 384 FVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGY-ELRPQDILL 442 V + + G+ ++ + L Y WPGN+R+L+N I R+ LD ++P+ + Sbjct: 418 LVKKVSHRLGICIKGISKEAKEYLCNYNWPGNIRELENVIERSANLLDSDFVIKPKHLP- 476 Query: 443 PDYDAATVAVGEDAMEGSLDEITSRFERSVLTQ-LYRNYPSTRKLAKRLGVSHTAIANKL 501 + + + L +I S E+ V+ L +N + K +K LG+S + K+ Sbjct: 477 KEILKSYIVKAPTKENKYLKDIISEVEKEVICNCLEKNNGNKNKTSKILGISRANLYKKI 536 Query: 502 REYGL 506 EY + Sbjct: 537 SEYNI 541 >UniRef50_A6CKR1 Putative uncharacterized protein n=1 Tax=Bacillus sp. SG-1 RepID=A6CKR1_9BACI Length = 685 Score = 487 bits (1254), Expect = e-136, Method: Composition-based stats. Identities = 142/471 (30%), Positives = 234/471 (49%), Gaps = 32/471 (6%) Query: 65 TDVRTVPWMPSE-----REHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDR 119 D+ + M E + L + L+ + +L D + + M +P +LF Sbjct: 219 QDISEIEKMAEELQTIKKLKLTIETALDHAYDGILMTDEHNVIKMVSPPLLELFNLDKKD 278 Query: 120 LRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDE---------- 169 + + ++ + ++E + + H NG +++ P+ + + Sbjct: 279 VLHKKVDIVMPQLKLDQVFKTEAAEVSDLH-ERNGIKYIVHRIPIKKEGKVIGAIGKVMF 337 Query: 170 ---NDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAML 226 N+ L + S Q + + I++ P M + + A K A Sbjct: 338 RQLNEVSALFKRLQKAESKASFYHQQLQKSETARFTWDHILSKHPYMDKLKKSAAKAAKG 397 Query: 227 SAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH-------- 278 + +LI G++GTGK+LFA+A H +S R+ ++ +NCA+IPED +ESE FG+ Sbjct: 398 RSTVLIRGESGTGKELFAHAIHNSSARSDGKFVIVNCAAIPEDLLESEFFGYDEGAFTGA 457 Query: 279 APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICA 338 GK G F+ ANGG++ LDEIG+MS +QAKLLR L + F RVG + + VDVR+I A Sbjct: 458 KQRGKVGKFDLANGGTLFLDEIGDMSVALQAKLLRVLQEREFYRVGGNSRIKVDVRIIAA 517 Query: 339 TQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPK 398 T ++L ++V++G FREDLYYRLNV++L +PPLR+ D+ LT + G Sbjct: 518 TNRDLEKMVKEGEFREDLYYRLNVISLKIPPLRERIHDVEYLTSQLMIELNSMLGTSITG 577 Query: 399 LAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAME 458 ++ L +Y WPGNVR+LKN + RA+T + ++ +D LPDY + + + Sbjct: 578 ISPKAKESLLQYNWPGNVRELKNILERAMTFAEHGNIQVED--LPDYLIDQLTIPKKEKN 635 Query: 459 GSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQK 509 G ++ R LTQ + + A+ LG+S + + KL++Y LS K Sbjct: 636 GLAEDAELEAIRKALTQA---NGNKAQAARLLGISRSGLYEKLKKYELSAK 683 >UniRef50_Q81CD5 Sigma-54-dependent transcriptional activator n=3 Tax=Bacillaceae RepID=Q81CD5_BACCR Length = 469 Score = 486 bits (1252), Expect = e-136, Method: Composition-based stats. Identities = 137/453 (30%), Positives = 227/453 (50%), Gaps = 28/453 (6%) Query: 83 SALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLIN--GFNFLRWLES 140 +++ V +D K V + ++F + + + + L+ L Sbjct: 17 DTVIQTTDSSVTVIDSKEYVRTWTDGAEKIFSVNHNEIIGQPITRFFDYKDLEILQSLHD 76 Query: 141 EPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVV---------MLRSTIRMGRQ 191 H L+ PVY DE V++ V + + M R Sbjct: 77 GKSIVAQFHQPRPDLFVLINSNPVYCNDEIIGAVVSETDVTNQVALNEKLFNMSHEMHRL 136 Query: 192 LQNVAA--QDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQ 249 Q VA + F + SP ++ ++ A+K+ + + +LI G++G GK++FA A H+ Sbjct: 137 EQEVAKYKDESDPFLAMNGKSPVIQRTIQLARKVCSVKSTVLILGESGVGKEVFAKAIHE 196 Query: 250 ASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIG 301 AS A P++++NC +IPE ESELFG+ +GKKG E A GG++ LDEIG Sbjct: 197 ASEAAKAPFISINCGAIPEALFESELFGYERGAFSGANSKGKKGKIELAQGGTLFLDEIG 256 Query: 302 EMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLN 361 EM MQ KLLR L + + RVG + E+++D R+I AT ++L E ++KG FREDLYYRLN Sbjct: 257 EMPLDMQVKLLRVLQERKYYRVGGEKEINIDFRIIAATNRDLQEEMRKGTFREDLYYRLN 316 Query: 362 VLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKN 421 V++L++PPLR+ +DI+ LT F+ F+ P L + + L Y WPGN+R+L+N Sbjct: 317 VVSLHIPPLRERREDIIELTYSFLNDFSINYNRPIRDLPSSIMHELLHYNWPGNIRELRN 376 Query: 422 AIYRALTQLDGYELRPQDIL------LPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQ 475 + R + ++ + + L ++ A ++ + + SL E E+ V+ + Sbjct: 377 VVERLVVFATDGIIKQEYLPFHTTETLDNHTAHSLLLSNNNTILSLQEEMDEHEKKVIER 436 Query: 476 LYRN-YPSTRKLAKRLGVSHTAIANKLREYGLS 507 R + + AK+LGV+ + N+L++ GL Sbjct: 437 ALRILNGNKLECAKQLGVTRATLYNRLKKLGLQ 469 >UniRef50_Q9KBP6 Transcriptional regulator (Sigma-L-dependent) n=1 Tax=Bacillus halodurans RepID=Q9KBP6_BACHD Length = 555 Score = 486 bits (1252), Expect = e-136, Method: Composition-based stats. Identities = 134/481 (27%), Positives = 243/481 (50%), Gaps = 20/481 (4%) Query: 39 IYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDM 98 ++ + ++ F ++A I + + + + + + L LE +P+L +D Sbjct: 83 MFTSGKKIPFNEIEQVVAMIETYLSMEEKQRQYTVENRKLRQELKGFLEFEDKPLLLLDR 142 Query: 99 KSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQ--N 156 + V + + G RL T +L + + + + G+ Sbjct: 143 QGIVTECSAGVQTVLGLNRSRLLGETIERLTSEKVKIDVTNVFKPSFQTVEMKLEGKREK 202 Query: 157 FLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHV 216 + ++I P Y+Q E V++ + L+ +Q +++ + +F I+ S + Sbjct: 203 WHVQIKPTYVQGE----VVSFMIKFLKKETNQFKQSKDL----LYSFQDIIGSSEAIHFA 254 Query: 217 VEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELF 276 E A+++A +L+ G++GTGK++FA A H+ S RA P++A+NCA+IP++ +ESELF Sbjct: 255 REMARRIAGQDITILLRGESGTGKEMFAQAVHRESQRAQGPFVAINCAAIPDNLLESELF 314 Query: 277 GHAPE--------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHE 328 G+ GK G FE A+GG++ LDEIG+MS +QAKLLR L + RVG Sbjct: 315 GYESGAFTGAQRQGKAGRFELAHGGTIFLDEIGDMSLHLQAKLLRVLQERKVERVGGTQS 374 Query: 329 VHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARF 388 V+VDVR+I AT +NL E+VQK FREDLYYRLNV+ + +PP+R+ +D+ L E F+ R Sbjct: 375 VYVDVRIIAATHRNLEEMVQKKTFREDLYYRLNVIPITIPPVRERKEDLPILIEYFMKRL 434 Query: 389 ADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDIL--LPDYD 446 ++++ + D ++ RY WPGNVR++ N + + G + + L + Sbjct: 435 SNKEKKQPKYFSKDAYDLIFRYPWPGNVREIVNMVEHVIYLETGDLITADSLPAYLKIKE 494 Query: 447 AATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 + + + + +E + +L R+ +++AK +G+S + +L++ + Sbjct: 495 GKSTSQLQINVAPHGEESFKQQVLHLLDVYGRHTEGKKRIAKEMGISLPTLYRRLKKLKI 554 Query: 507 S 507 Sbjct: 555 R 555 >UniRef50_A3ESE7 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Leptospirillum sp. Group II RepID=A3ESE7_9BACT Length = 473 Score = 486 bits (1252), Expect = e-136, Method: Composition-based stats. Identities = 129/443 (29%), Positives = 232/443 (52%), Gaps = 25/443 (5%) Query: 83 SALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFN------FLR 136 A+L++L E V+++ + K+ N A+ ++ + D +++N + Sbjct: 38 QAILDSLEEGVVAIGLDKKILYMNRAAREILKNREDSPTPSDCRKVVNSSECQARCVLAK 97 Query: 137 WLESEPQDSHNEHVVIN--GQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQN 194 +E+ + E +++ G+ ++ + L+D + + + G V + ++ + Sbjct: 98 TVETGEPIRNMEISLVDALGRRRVLRLNTALLKDSSGK--VFGGVEIFHDISQIVALKEE 155 Query: 195 VAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRA 254 + + +F +I+ S KM+ + + +A + +LI G++GTGK+L A+A H+ SPR Sbjct: 156 LKGR--YSFGRIIGRSEKMQELFDLLPVIAQSKSTVLIEGESGTGKELVAHALHENSPRR 213 Query: 255 GKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRM 307 P++ LNCA++ E +ESELFGH A + + G FE A+GG++ LDEIGE+SP M Sbjct: 214 EGPFVKLNCAALSEGVLESELFGHVKGAFTGAVQSRPGRFELASGGTLFLDEIGEISPSM 273 Query: 308 QAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNL 367 Q KLLR L + F RVG V VDVRVI AT ++L + +++G FR+DLYYRL V+ + L Sbjct: 274 QVKLLRVLQEEEFERVGGTKTVKVDVRVIAATNRDLKQAMEEGSFRKDLYYRLRVIPVTL 333 Query: 368 PPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRAL 427 PPLR+ D+ L + F+ R+ E G L ++ VL Y +PGN+R+L+N I A Sbjct: 334 PPLRERQGDLPLLIQSFIERYNAELGKNIQGLTSEAMKVLLNYHYPGNIRELQNIIEHAA 393 Query: 428 TQLDGYELRPQDI---LLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTR 484 + + + + LLP ++ E + + R + + + Sbjct: 394 LLCNDSRIDLRHLPGDLLPAQSQSSFLELAMMEENPVRYVEKELIR---LAMAESGGNVS 450 Query: 485 KLAKRLGVSHTAIANKLREYGLS 507 ++A++L + + + +L+E L+ Sbjct: 451 EVARKLSMGRSTLWRRLKEMKLA 473 >UniRef50_A1VFM6 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfovibrio vulgaris RepID=A1VFM6_DESVV Length = 569 Score = 486 bits (1252), Expect = e-136, Method: Composition-based stats. Identities = 153/511 (29%), Positives = 243/511 (47%), Gaps = 28/511 (5%) Query: 12 GLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVP 71 GL +L + +D + YL +E ++ + +A + D R Sbjct: 71 GLEAPVLLVTGNPSLDTASRAVSTGAFEYLIKP-VERDALLAAVARAHAHKSLQDERAAL 129 Query: 72 WMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLING 131 +R L A+ ++P+ ++SV +V N A + + + ++ Sbjct: 130 HDELQRLRAHLEAIFRSVPDVLVSVGRDGRVVRINDAGLGVLRLSGEEVEGRHWQEVFGE 189 Query: 132 F-----NFLRWLESEPQDSHNEHVVI---NGQNFLMEITPVYLQDENDQHVLTGAVVMLR 183 + + LR Q V I G + + E++ L+ E ++ GAV++LR Sbjct: 190 WESQLGDVLRHALESRQRVPRRRVNITVDEGASQVFEVSASPLRGETGDYL--GAVLVLR 247 Query: 184 STIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLF 243 R+ A +V +SP M+ + + LA +L+TG++GTGK+L Sbjct: 248 DISRLAACCPPGGAPGEWG---LVGLSPAMQRIYHLLEDLAPTDTTVLVTGESGTGKELV 304 Query: 244 AYACHQASPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVL 296 A A H A PRA P + +NCA++PE +ESELFGH A + G F+ A+GG++ Sbjct: 305 AEALHNAGPRATGPLIKVNCAALPETLLESELFGHVRGAFTGALRDRVGRFQLAHGGTIF 364 Query: 297 LDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDL 356 LDEIG++SP++Q +LLR L + F RVG+ VDVRVI AT +NL E V G+FREDL Sbjct: 365 LDEIGDLSPQVQLRLLRVLQEREFERVGDTRTTRVDVRVIAATHRNLRERVASGLFREDL 424 Query: 357 YYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNV 416 YYRL V+ L++PPLR+ +D+ L E FV F + + L ++WPGNV Sbjct: 425 YYRLRVVELHMPPLRERHEDLALLAEHFVGVFNQQFSRCVMGFTEAASRALMTHSWPGNV 484 Query: 417 RQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQL 476 R+L++A+ G + D+ PD +V A E + E +V L Sbjct: 485 RELRHAVEHGFILCKGERIDLADLP-PDVQGTEASVFPRA------ERSGVHEAAVREAL 537 Query: 477 YRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 + + + A+ LGV+ + KL EYG+ Sbjct: 538 KKAGGNKARAARLLGVARQTLYRKLAEYGIR 568 >UniRef50_A6LYP8 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Clostridiaceae RepID=A6LYP8_CLOB8 Length = 574 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 125/463 (26%), Positives = 220/463 (47%), Gaps = 28/463 (6%) Query: 68 RTVPWMPSEREHLA-LSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAA 126 + + + ER+ L+ ++E + ++ +D + V M + A + G K + Sbjct: 116 QLIHKLEEERDSKEILNTVIETAYDGMIIIDKQGIVTMISNAYTEFLGIKREDAIGRHVN 175 Query: 127 QLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHV------------ 174 ++I LE+ ++ H I G + P+ E V Sbjct: 176 EVIENTRMPIVLETGKEEVAQLH-KIKGSYMIASRIPIVKNGEIIGVVGKVLFRNVKELN 234 Query: 175 -LTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLIT 233 L + ++ + + + + I+ S + +K A ++ +LI Sbjct: 235 SLYKRISVIEKELATYKSRFREFNKANYSLENIIGESEPIVMAKAIVEKAAHTNSNVLIL 294 Query: 234 GDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKG 285 G++GTGK++FA+A H S R P++ +NCA+IP D +ESELFG+ EGK G Sbjct: 295 GESGTGKEIFAHAIHSESNRHEGPFVKVNCAAIPSDLLESELFGYEAGAFTGAKKEGKIG 354 Query: 286 FFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVE 345 FE AN G++ LDEIG+M MQ KLLR + + +VG +++R+I AT +NL Sbjct: 355 KFEIANEGTIFLDEIGDMPLHMQVKLLRVIQEREVEKVGGVASKKINIRIIAATNRNLER 414 Query: 346 LVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNT 405 LV++G FREDLYYRLNV+T+ +PPLR+ DI+ ++ + + + + ++ + Sbjct: 415 LVEEGKFREDLYYRLNVVTIEIPPLRERGNDIILISNHLIKKLSVDLDKKVKGISKEAEQ 474 Query: 406 VLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEIT 465 L Y W GNVR+L+N + RA+ ++ E+ I + D + L +I Sbjct: 475 YLKIYEWKGNVRELENILERAINIMENSEI----IQVKDLPKEITGKKVSMVPKKLQDIL 530 Query: 466 SRFER-SVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 + E+ +++ L + K AK L + T++ K+ +Y + Sbjct: 531 AESEKNAIILALRAADGNKSKAAKILDIGRTSLYEKIEKYKIQ 573 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 17/121 (14%), Positives = 47/121 (38%), Gaps = 6/121 (4%) Query: 81 ALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLES 140 L +L+ + ++ VD K+ N A+ LF +++ + +L + Sbjct: 13 KLEVILDNMFNAIIVVDSNDKILFINEAASILFDIDSKGGLGKNINEIMPDPDIEYFLST 72 Query: 141 EPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDV 200 + ++ +V+N N ++ I P + G++++ + + + + + Sbjct: 73 KKEEIKRP-IVVNELNLILSIIPF-----GENTNTQGSMLIFSNVTNYSQLIHKLEEERD 126 Query: 201 S 201 S Sbjct: 127 S 127 >UniRef50_B0K4W6 GAF modulated sigma54 specific transcriptional regulator, Fis family n=5 Tax=Thermoanaerobacteraceae RepID=B0K4W6_THEPX Length = 576 Score = 485 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 136/436 (31%), Positives = 227/436 (52%), Gaps = 15/436 (3%) Query: 83 SALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEP 142 LE +P+L +D ++ N AS ++ G K + L A ++ + + +L Sbjct: 147 EYFLENNSDPLLVMDNTGRLIKVNYASEKVLGWKKEDLIGRRADEIFDNSQEILFLIKAR 206 Query: 143 QDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSA 202 Q + +++ + ++ + + A++ L+ + G Q + + Sbjct: 207 QSIKGKEILVQSKKGILRCSADVSPISGYYNENVAALIALK--MHEGSQFYISSPPALKG 264 Query: 203 FSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALN 262 F I+ P ++ + AQ A AP+LI G+TGTGKDLFA A H+AS R P++A+N Sbjct: 265 FEVILGNHPCLRESIRLAQIAANSDAPVLILGETGTGKDLFARAIHEASGRK-GPFVAIN 323 Query: 263 CASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRF 314 ++P + + SELFG+ PEGK G FEQA GG++ LDEIG+M +Q LLR Sbjct: 324 GGALPRELIGSELFGYVGGAFTGARPEGKPGKFEQAQGGTLFLDEIGDMPMDIQVYLLRV 383 Query: 315 LNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCP 374 L + R+G E+ +DVR+I AT +L +LV++ FREDLY+RL VLT++L PLR+ Sbjct: 384 LEEKKVVRIGGHKEIPLDVRIIAATNSDLTKLVREKKFREDLYFRLRVLTIHLCPLRERK 443 Query: 375 QDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYE 434 DI L + F+ +F+ + G + + +L Y WPGN+R+L+N A+ + Sbjct: 444 SDIPLLFQHFIHKFSQKLGKNITNIDPSIWPLLGNYDWPGNIRELRNVAEWAVNIAEVNT 503 Query: 435 LRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNY-PSTRKLAKRLGVS 493 + LP Y + + + E++ S + E+ ++QL +Y + K+AK LG++ Sbjct: 504 ISVSH--LPSYLSGSQTIRENSNSFSSTSLI-ELEKQEISQLLEHYGGNITKVAKALGIA 560 Query: 494 HTAIANKLREYGLSQK 509 + KL +YGL + Sbjct: 561 RNTLYRKLYKYGLKTR 576 >UniRef50_C9S238 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Geobacillus RepID=C9S238_GEOSY Length = 467 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 123/446 (27%), Positives = 216/446 (48%), Gaps = 23/446 (5%) Query: 80 LALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLE 139 + LL + +PVL VD K + N ++ Q+F + + + + + L++++ Sbjct: 18 REIEGLLSFITDPVLVVDAKGYIVHTNSSAEQIFERSQIIMIGKHVTEFVQSASLLQYIK 77 Query: 140 SEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQD 199 ++ +++ + +E + + + GA++ L I + Q Q+ Sbjct: 78 QGKPATNLAVCIMSAKGTRLEFSCRLHPLLVNAQ-VEGAILFLTKPILLQEQEQSSRYGT 136 Query: 200 VSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYL 259 + ++ SP + + EQ K+A + +LI G++GTGK++ A + H+ S R P++ Sbjct: 137 RFSLDDVIGSSPAITALKEQVMKIAKSESTVLIRGESGTGKEVLAQSIHRLSHRNKGPFV 196 Query: 260 ALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKL 311 A+NCA+IPE +ESELFG+ GK G FE A GG++ LDEIG+M +QAKL Sbjct: 197 AINCAAIPEALLESELFGYEEGAFTGAKKGGKPGRFELARGGTLFLDEIGDMPLYLQAKL 256 Query: 312 LRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLR 371 LR L + RVG + VDVR+I AT K+L ++ FREDLY+RLNV+ L +PPLR Sbjct: 257 LRVLQERRIERVGGTKSIEVDVRIIAATHKDLESMIANNQFREDLYFRLNVIPLYVPPLR 316 Query: 372 DCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLD 431 + +D+ L + ++ +F G + ++ + Y WPGN+R+L+N + + Sbjct: 317 ERKEDLYELIQYYMYKFCKRLGKEPKRFSSQALKKIFDYHWPGNIRELENMVEYIVNLEI 376 Query: 432 GYELRPQDILLPDYDAATVAVGEDAMEGSLDEITS----------RFERSVLTQLYRNYP 481 G + + + + + E + S E ++ Q + + Sbjct: 377 GDLVTISSLPASIREMSKDQRHDMEEEMKEPQTVSHLPKSLYKINEVEEQLIIQALQRFG 436 Query: 482 ----STRKLAKRLGVSHTAIANKLRE 503 RK A+ LG+S + KL + Sbjct: 437 TSTEGKRKAAEALGISLATLYRKLEK 462 >UniRef50_Q5WE88 Transcriptional activator of the acetoin dehydrogenase operon n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WE88_BACSK Length = 647 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 159/481 (33%), Positives = 243/481 (50%), Gaps = 41/481 (8%) Query: 42 NFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSK 101 N +++ S +AE + +A + + + R HL L LE + VLSVD+ + Sbjct: 193 NASDVHRHSIGYALAEAKNMA--LSLERHFFEYALRHHLFLHTALEKMDHIVLSVDLSDQ 250 Query: 102 VDMANPASCQLFGQKLDRLRNHTAAQLINGFN-FLRWLESEPQDSHNEHVVIN--GQNFL 158 + N + + +R +N T+ + + + Q NE + + + Sbjct: 251 ILTRNEGA-----NRSERFQNETSIASFPELKALVANVRTNGQQIVNEQIQDGSTNKRYQ 305 Query: 159 MEITPVYLQDENDQHVLTGAVVMLRSTIRM--GRQLQNVAAQDVSAFSQIVAVSPKMKHV 216 + I PV QD + G V+ L+ R+ ++ A +FS +V VSP + + Sbjct: 306 VSIYPVRFQDH-----IYGVVIFLQQDQRVVNKKKPSPRKATTRYSFSNMVGVSPTFQAL 360 Query: 217 VEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELF 276 ++QA+K A L + +LI+G+TGTGK++ A A HQAS R GKP++A+NC ++P +ESEL Sbjct: 361 LKQAEKAASLQSTILISGETGTGKEVLAQAIHQASNRGGKPFVAINCGAVPPSLLESELS 420 Query: 277 GHAPE--------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHE 328 G+ G G FEQANGG++ LDEIG+M +Q LLR L + R+G Sbjct: 421 GYEAGAFTGSKAKGSAGKFEQANGGTIFLDEIGDMPLDLQVHLLRILEERVVTRIGGSVP 480 Query: 329 VHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARF 388 + VDVRVI AT K+L E VQKG FREDLYYRL VL + LPPLR+ +DI L + F+ Sbjct: 481 IPVDVRVISATNKDLKEAVQKGTFREDLYYRLCVLQMELPPLRERSEDIPVLIQSFLPAL 540 Query: 389 ADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAA 448 E G L + T+L RY WPGN+R+LKN + +A+ +DG + P + Y Sbjct: 541 CQEFGKQMISLTRETLTILERYHWPGNIRELKNVLQQAMFVMDGDVIHPHHLPDSFYSQT 600 Query: 449 TVAVGEDAMEGSLDEITSRFERS-VLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 +E+ +L L + + K A L +S I +L++Y L Sbjct: 601 QS---------------DEYEKQKLLRALEQQEGNVTKAAASLNMSRATIYRRLKKYRLE 645 Query: 508 Q 508 + Sbjct: 646 R 646 >UniRef50_A0LPB0 Sigma54 specific transcriptional regulator, Fis family n=20 Tax=Deltaproteobacteria RepID=A0LPB0_SYNFM Length = 519 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 130/448 (29%), Positives = 223/448 (49%), Gaps = 27/448 (6%) Query: 83 SALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLI-----NGFNFLRW 137 +L+++ + V +VD+ ++ N A+ ++ G ++ L++ Sbjct: 81 ETILDSIADGVFTVDLDWRITSFNRAAEEITGVSASDAIGRPCCEVFRANVCESTCVLKF 140 Query: 138 LESEPQDSHNEHVVI---NGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQN 194 + N+ V I +G+ + ++ L++ + + G V R + + Sbjct: 141 TMETRKPIVNKSVAILRADGREIPISVSTALLKNASGHTI--GGVETFRDLSLVETLRKE 198 Query: 195 VAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRA 254 + Q F IV+ SP M + ++A + +LI G++GTGK+L + A H S RA Sbjct: 199 IDRQ--YRFQDIVSKSPAMLELFAILPEVARSESTVLIQGESGTGKELLSRAVHSLSSRA 256 Query: 255 GKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRM 307 P++A+NC ++P+ +ESELFGH A + + G F QA GG++ LDEIG++SP + Sbjct: 257 AGPFVAINCGALPDTLLESELFGHVAGAFTDARKNRAGRFAQAEGGTLFLDEIGDVSPAL 316 Query: 308 QAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNL 367 Q +LLR L + T+ +G V +VR++ A+ ++L +LV +G FR+DLYYR+NV+ L L Sbjct: 317 QVRLLRVLEERTYEPLGSSRTVTANVRIVAASNRDLAQLVAEGSFRKDLYYRINVVKLEL 376 Query: 368 PPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRAL 427 P L +DI L E F+AR + L+ + V R+ WPGN+R+L+N I A Sbjct: 377 PTLARRKEDIPLLAEHFIARLNKLRNKNILGLSHEALAVFMRHNWPGNIRELENVIEYAF 436 Query: 428 TQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLA 487 G ++P LP+Y A V D+ SL + +R R L RN A Sbjct: 437 ILCRGGLIQPA--FLPEYLHAHACVLPDSGGLSLRDNEARAIRD---ALDRNQWRRMATA 491 Query: 488 KRLGVSHTAIANKLREYGL---SQKKNE 512 + LG+ + K++ + +++E Sbjct: 492 RELGIDKNTLRRKMKRLNIRADDPRRDE 519 >UniRef50_Q0SR73 Sigma-54 dependent transcriptional regulator n=1 Tax=Clostridium perfringens SM101 RepID=Q0SR73_CLOPS Length = 455 Score = 484 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 132/448 (29%), Positives = 228/448 (50%), Gaps = 27/448 (6%) Query: 82 LSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESE 141 L L +P ++ + ++K+D N + K + N N L S Sbjct: 11 LENLTNHIPLGLIFISPENKIDFINKKAESFLNSKSKSVENIDIFSFFPQLNELINNSSS 70 Query: 142 PQDSHNEHVV--INGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQD 199 +++ + +V ++G + ++I P+ ND + G +++L+ + + + Q+ Sbjct: 71 KKNNQKDALVTSLDGNKYNLDICPI-----NDGDIFVGWLLILKDLKEIISTVNKYSNQE 125 Query: 200 V-SAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPY 258 F I+ SP++K V+ A+ ++ + +LITG++G GK+L A + H AS + P+ Sbjct: 126 AAYTFDDIIGESPQLKKVLRDAELISKSPSTVLITGESGCGKELLAQSIHNASNVSNGPF 185 Query: 259 LALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAK 310 +ALNC +IP+ +ESELFG+ GK G FE A+GG++ LDEI EM MQ Sbjct: 186 IALNCGAIPKTLIESELFGYEEASFTGSRKGGKPGKFELADGGTIFLDEICEMPIEMQVT 245 Query: 311 LLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPL 370 LLR + +G R+G ++ ++VR+I AT KNL E ++KG FREDLYYRLNV+ L+LPPL Sbjct: 246 LLRVIQEGVVTRIGGKTQIPINVRIIAATNKNLKEEIKKGTFREDLYYRLNVMPLHLPPL 305 Query: 371 RDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQ- 429 +D D+ L F+ + + P + L + Y WPGN+R+L+N + + Sbjct: 306 KDRLGDVPILINYFLNIKSQKLHKGIPNINQKLYKKMISYCWPGNIRELENCVENIVNLN 365 Query: 430 -LDGYEL-------RPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNY- 480 YE+ D L + ++ + E E S+ + E+ + + + Sbjct: 366 GSTSYEINFDECHCLKTDNLGNPINPNSLDLPESYNENSIKPLII-LEKEAIEKALCTFD 424 Query: 481 PSTRKLAKRLGVSHTAIANKLREYGLSQ 508 + K + LG+S A+ NK++ YG+++ Sbjct: 425 GNITKASNALGISRNALYNKIKRYGINK 452 >UniRef50_Q5WJF2 Transcriptional regulator n=2 Tax=Bacillus RepID=Q5WJF2_BACSK Length = 511 Score = 484 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 136/463 (29%), Positives = 225/463 (48%), Gaps = 37/463 (7%) Query: 69 TVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQL 128 V +R + L ++EA+ + V VD + ++ N S QL+ + Sbjct: 61 NVLLEELKRTNAFLQTMMEAMDDAVTMVDEEQRIIQINAKSEQLYALTSCAIAGKPLRDY 120 Query: 129 INGFNFLRW--LESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRS-- 184 + + W ++ + H + G + ++ PV+ + G + + R Sbjct: 121 FDEEALVLWSVMKDKQPVVHQYNQPKPGLHVIVNTVPVF-----EGEACVGGLSIERDIT 175 Query: 185 -TIRMGRQLQNVAAQ--------DVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGD 235 +R+ +L + A + F +I+ S ++ + A K+A +A +LITG+ Sbjct: 176 DVVRLNEELSSKTASLHHLNTTSEDEPFQKIIGRSEPIRRAIHLAAKVAKTTANVLITGE 235 Query: 236 TGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPEGKKGFF-------- 287 +G GK+LFA HQAS RA KP++A+NC +IP ESELFG+ +G F Sbjct: 236 SGVGKELFAEGIHQASDRAEKPFIAINCGAIPAALFESELFGYV----QGAFTGAAKGGK 291 Query: 288 ----EQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNL 343 + A GG++ LDE+GEM +Q KLLR L + + RVG + +DVR++ AT ++L Sbjct: 292 KGKLDAAKGGTLFLDEVGEMPAELQVKLLRVLEERAYYRVGGHEAIPLDVRIVAATNRDL 351 Query: 344 VELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADL 403 ++V +G FRED YYRL+V+++++PPLR+ +D+ L + F+ FA P PKL ++ Sbjct: 352 EKMVAEGRFREDFYYRLHVISISIPPLRERIEDLPELVQSFLQEFAQRYEKPVPKLDPEV 411 Query: 404 NTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDE 463 L W GN+RQL+N I R + +E LP+ + A S D+ Sbjct: 412 LYALRTQKWEGNIRQLRNLIERIVILNGDHEGSVHWYHLPESYQQKLKHMPLA---SKDK 468 Query: 464 ITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 ++ L + Y + AK LG+S + NKL+ Y L Sbjct: 469 PKKDERMEIINALEKTYGNKSAAAKLLGISRATLYNKLKHYKL 511 >UniRef50_C5ESD9 PAS modulated sigma54 specific transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ESD9_9FIRM Length = 474 Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 148/456 (32%), Positives = 222/456 (48%), Gaps = 29/456 (6%) Query: 76 EREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFL 135 E + L +LE V+ +D K V N + KL++L + L Sbjct: 24 EWDAQILLEILENADNAVIVIDCKGTVVYINRFYAEHMNIKLEKLMGRNLYDIEPQAKLL 83 Query: 136 RWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHV--------LTGAVVMLRSTIR 187 R +E ++E I N L D + V +T V + R + Sbjct: 84 RVMEDGGGRDNDEVEYIKSLNIDSVGLAFPLYDSRKEKVGACAIFKDVTQVVELTRKLQK 143 Query: 188 MGRQLQNVAAQDVSA-----FSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDL 242 +Q +A+Q ++ F ++ + ++ + A K+A + +LI G++G GK++ Sbjct: 144 SKEMVQYLASQLEASELPISFQSYISQNKDLQKTLSLAAKVANTNCTILIQGESGVGKEV 203 Query: 243 FAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGS 294 A H AS R +P + +NCASIPE+ +ESELFG+ GK G FE AN G+ Sbjct: 204 MAKCIHNASNRKERPMIKVNCASIPENLLESELFGYEEGAFTGARKGGKLGKFELANKGT 263 Query: 295 VLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFRE 354 +LLDEIG+MS MQ+KLLR L + RVG + +DVRVI AT +NL E+V+K FR Sbjct: 264 ILLDEIGDMSLTMQSKLLRVLQEKELERVGGTKTIKLDVRVIAATNQNLEEMVEKNEFRS 323 Query: 355 DLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPG 414 DLYYRL+V+ +++P LR +DIMPL F+ R ++G L +L Y WPG Sbjct: 324 DLYYRLHVVPIHIPALRCRREDIMPLVRYFIERNGGDEGTD---LTPGAARMLEEYGWPG 380 Query: 415 NVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGS--LDEITSRFERSV 472 NVR+L+N I A+ G L +D P Y A A +G L + + E+S+ Sbjct: 381 NVRELQNVIEYAMIVKTGDILEIKDF--PQYLRGDGAEDGPAEDGPCRLKDAVEQLEKSM 438 Query: 473 LTQLY-RNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 + + RN + LG+S + KL +YGL Sbjct: 439 IKRALKRNNGNKSMAINELGLSRRSFYEKLEKYGLK 474 >UniRef50_B7HA57 Sensory box sigma-54 dependent DNA-binding response regulator n=58 Tax=Bacillus cereus group RepID=B7HA57_BACC4 Length = 553 Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 136/453 (30%), Positives = 225/453 (49%), Gaps = 28/453 (6%) Query: 83 SALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLIN--GFNFLRWLES 140 +++ V +D K V + ++F + + + + L+ L Sbjct: 101 DTVIQTTDSSVTVIDSKEYVRTWTDGAEKIFSVNHNEIIGQPITRFFDYKDLEILQSLHD 160 Query: 141 EPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVV---------MLRSTIRMGRQ 191 H L+ PVY DE V++ V + + M R Sbjct: 161 GKSIVAQFHQPRPDLFVLINSNPVYCNDEIIGAVVSETDVTNQVALNEKLFNMSHEMHRL 220 Query: 192 LQNVAA--QDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQ 249 Q VA + F + SP ++ ++ A+K+ + + +LI G++G GK++FA A H+ Sbjct: 221 EQEVAKYKDESDPFLAMNGKSPVIQRTIQLARKVCSVKSTVLILGESGVGKEVFAKAIHE 280 Query: 250 ASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIG 301 AS A P++++NC +IPE ESELFG+ +GKKG E A GG++ LDEIG Sbjct: 281 ASEAAKAPFISINCGAIPEALFESELFGYERGAFSGANSKGKKGKIELAQGGTLFLDEIG 340 Query: 302 EMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLN 361 EM MQ KLLR L + + RVG + E+++D R+I AT ++L E ++KG FREDLYYRLN Sbjct: 341 EMPLDMQVKLLRVLQERKYYRVGGEKEINIDFRIIAATNRDLQEEMRKGTFREDLYYRLN 400 Query: 362 VLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKN 421 V++L +PPLR+ +DI+ LT F+ F+ P L + + L Y WPGN+R+L+N Sbjct: 401 VVSLQIPPLRERREDIIELTYSFLNDFSINYNRPIRDLPSSIMHELLHYNWPGNIRELRN 460 Query: 422 AIYRALTQLDGYELRPQDIL------LPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQ 475 + R + ++ + + L ++ A ++ + + SL E E+ V+ + Sbjct: 461 VVERLVVFATDGIIKQEYLPFHTTETLDNHTAHSLLLSNNNTILSLQEEMDEHEKKVIER 520 Query: 476 LYRN-YPSTRKLAKRLGVSHTAIANKLREYGLS 507 R + + AK+LGV+ + N+L++ L Sbjct: 521 ALRILNGNKLECAKQLGVTRATLYNRLKKLRLQ 553 >UniRef50_A5D511 Transcriptional regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D511_PELTS Length = 478 Score = 484 bits (1246), Expect = e-135, Method: Composition-based stats. Identities = 143/464 (30%), Positives = 242/464 (52%), Gaps = 35/464 (7%) Query: 82 LSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESE 141 L +L++ PE + VD +++V N A KL+ + +I +++ Sbjct: 16 LIKVLDSDPECFVFVDSEARVIWLNKAYQSYLNVKLEEAQGKPVVDVIPNTRLQVVVKTG 75 Query: 142 PQDSHNEHVVINGQNFLMEITPVYLQDE----------NDQHVLTGAVVMLRSTIRMGRQ 191 + + ING+ ++ P++ + + V L+ + ++ Sbjct: 76 IPEL-GKVQNINGRRAIVNRIPLFKDGKIIVAIGKVLFKTKKEFAELVSKLKEEVDCYKR 134 Query: 192 LQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQAS 251 N F I+ SP + HV + AQK+A + ++I G++G+GK+L A++ H AS Sbjct: 135 ELNEIYTSKWKFEDIITCSPNLIHVKDLAQKVAPVDVNVMILGESGSGKELLAHSIHSAS 194 Query: 252 PRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGFFEQANGGSVLLDEIGEM 303 R+ KP++ +NCA+IPE+ +ESELFG+ P GK G E AN G+V LDEIG+M Sbjct: 195 TRSSKPFVCINCAAIPENIMESELFGYEPGAFTNAKSNGKLGKLEIANNGTVFLDEIGDM 254 Query: 304 SPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVL 363 P MQAKLLRFL +G +VG V V+VRVICAT +N+ ++V+ G+FR DLYYRL+ + Sbjct: 255 PPFMQAKLLRFLQEGELEKVGSVKPVSVNVRVICATNRNIQKMVEDGIFRADLYYRLSSI 314 Query: 364 TLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAI 423 L +PPLR+ P+DI L + F+ ++ +P K+ + +L Y WPGNVR+L++ + Sbjct: 315 ILKIPPLRERPEDIELLCDHFLKSITEKWAIPLKKIDKEALEILKNYYWPGNVRELQHLL 374 Query: 424 YRALTQLDGYELRPQDIL-----------LPDYDAATVAVGEDAMEGSLD----EITSRF 468 DG ++ + + L + + +++ +G+ ++ + Sbjct: 375 ETLCCITDGNIIKAKALPSYLFGQSDSAMLKNNELRRISLSNINSDGNNKYICSDVINSK 434 Query: 469 ERSVLTQLYRN-YPSTRKLAKRLGVSHTAIANKLREYGLSQKKN 511 E+ +L ++ RN + RK A+ LG+ T + KLR+Y + K N Sbjct: 435 EKELLEEVLRNTGGNKRKAAEMLGIHRTTLYYKLRKYNMQYKVN 478 >UniRef50_B2A8I7 Putative sigma54 specific transcriptional regulator n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A8I7_NATTJ Length = 601 Score = 483 bits (1245), Expect = e-135, Method: Composition-based stats. Identities = 148/515 (28%), Positives = 262/515 (50%), Gaps = 34/515 (6%) Query: 15 RELLDLLVLRGID-----LRGIEIDPIGRIY-LNFAELEFESFSSLMAEIRRIAGVTDVR 68 +E +L ++ + GI + L +AE ++ SF M+E+ +A Sbjct: 97 QEKAHMLSPINLNGQVIAIIGITAFTESQKQDLTYAEEKYRSFIKKMSEL--LADSFSNE 154 Query: 69 TVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQL 128 + + + + +SA++ ++ E +L+VD ++V N A L + D + + Sbjct: 155 QI-ILEKTKAYAQVSAIVNSVYEGILAVDDYNEVIACNDAVRDLLDIRGD-IIGQNVENV 212 Query: 129 INGFNFLRWLESEPQD-SHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIR 187 + F + + H ++ G + L+ + P+ + ++ + GAV +R T Sbjct: 213 VPELPFEGVITTGTSKLGHEQYFSKVGIHCLVNMKPIKMNNK-----VVGAVATVRDTKE 267 Query: 188 MGRQLQNVAAQDV-SAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYA 246 + + V+ +F+ I++ + +K + E+A+K++ + +LI G++GTGK+L+A A Sbjct: 268 IEKLAFRVSGNTAGFSFNAIISKNNNIKELKEKAKKVSQTDSTVLIRGESGTGKELYARA 327 Query: 247 CHQASPRAGKPYLALNCASIPEDAVESELFGHAPEG--------KKGFFEQANGGSVLLD 298 H ASPR P++ ++C +IPE +ESELFG+ K G FE A GG++ LD Sbjct: 328 IHSASPRWKGPFVPVHCGAIPETLLESELFGYESGAFTGAKKGGKIGKFELAEGGTIFLD 387 Query: 299 EIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYY 358 EIG+M +Q KLLR + DGTF R+G + +DVRV+ AT + L E ++K FR DL+Y Sbjct: 388 EIGDMPIHLQTKLLRVMQDGTFERIGSPETIKIDVRVLAATHQPLEEFIEKNKFRRDLFY 447 Query: 359 RLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQ 418 RLNV+ L +P LR+ +DI L F+ ++A++ +P L+ +L + L +Y+WPGNVR+ Sbjct: 448 RLNVVPLFIPALRERREDISLLLNHFLNKYANKLKREQPALSRELMSFLEQYSWPGNVRE 507 Query: 419 LKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEIT---SRFERSVLTQ 475 L+N + + L D LP + +D + D+ E+ + Sbjct: 508 LENVAEYFININEKGYLDLGD--LPKNMKDKLLETQDYQKNVGDDEILPLEELEKRSFEK 565 Query: 476 LYRNYP----STRKLAKRLGVSHTAIANKLREYGL 506 + Y + +A +LGVS + KL++YGL Sbjct: 566 AVKIYGISEQGKQLMAGKLGVSRATVYRKLKKYGL 600 >UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Ammonifex degensii KC4 RepID=C9RBQ4_AMMDK Length = 470 Score = 483 bits (1244), Expect = e-135, Method: Composition-based stats. Identities = 132/321 (41%), Positives = 191/321 (59%), Gaps = 13/321 (4%) Query: 206 IVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCAS 265 ++ SP M+ V + ++A +LI G++GTGK+L A A H SPR GKP++ ++C + Sbjct: 139 LIGCSPAMQEVYKTIGRIADSDVTVLIQGESGTGKELVAEAIHYNSPRQGKPFVKIDCTA 198 Query: 266 IPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDG 318 IPE+ +ESELFGH A K G FE A+GG+V LDEIG++SP +QAKLLRFL + Sbjct: 199 IPENLLESELFGHEKGAFTGAHTRKLGKFELADGGTVFLDEIGDISPALQAKLLRFLQEK 258 Query: 319 TFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIM 378 F RVG VDVR+I AT K+L E V+ G+FREDLYYRLNV+ + LPPLR+ +DIM Sbjct: 259 AFERVGGTETRRVDVRIIAATNKDLEERVKSGLFREDLYYRLNVVEIKLPPLRERKEDIM 318 Query: 379 PLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQ 438 L + FV+ + G L + +L +Y WPGNVR+L+N RA+ G + P+ Sbjct: 319 LLVDYFVSLSNRKFGKQVTGLTRSVADILLQYNWPGNVRELRNVCERAVLMARGNVITPE 378 Query: 439 DI---LLPDYDAATVA--VGEDAMEGSLDEITSRFER-SVLTQLYRNYPSTRKLAKRLGV 492 + LL T A ED L E+ + ER ++L L + +A+ LG+ Sbjct: 379 SLPEYLLRAVRGRTEAWHPAEDRGVLPLKEMVAEMERSAILRALEEYRGNKTAVARALGM 438 Query: 493 SHTAIANKLREYGLSQKKNEE 513 S T + K++E G++ +N++ Sbjct: 439 SRTTLYAKMKELGIADPENKD 459 >UniRef50_A8MFU8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=A8MFU8_ALKOO Length = 469 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 125/463 (26%), Positives = 224/463 (48%), Gaps = 29/463 (6%) Query: 76 EREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFL 135 +R +L + + VD + V N C G + + + I+ + Sbjct: 6 DRYKYIFDEILTMTDDGFIVVDREGVVTDINDQYCDFLGTSKENVIGRNIKETISNSKMI 65 Query: 136 RWLESEPQDSHNEHVVINGQN-------FLMEITPVYLQDENDQHVLTGAVVMLR----- 183 +++ ++ H ++G+ L+ + V+ + + + L+ Sbjct: 66 DIMKNACREEGAIHKFVDGETKEVDNKFLLVSRSCVFDEKQEVIASVAQVKFRLQTLDCA 125 Query: 184 -------STIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDT 236 S + R+ N + + F ++ +S + + + + A S P+L+TG+T Sbjct: 126 QKLMKEYSALEFYREEYNKISTNQYTFDGMIGISKRFLGIKKMGMRAAKNSFPVLLTGET 185 Query: 237 GTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPEG--------KKGFFE 288 GTGK++FA A H S R+ KP +++NC +IP + +ESELFG+ K G F Sbjct: 186 GTGKEVFARAIHNGSDRSSKPMVSINCGAIPSELLESELFGYEEGSFTGAKKGGKIGKFI 245 Query: 289 QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQ 348 QA+GG++ LDEIG+M P MQ KLLR L + ++G V VD+RVI AT++NLV++V+ Sbjct: 246 QADGGTIFLDEIGDMPPDMQVKLLRVLQEKEVDKIGGTEPVSVDIRVIAATRQNLVKMVR 305 Query: 349 KGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLT 408 +G FREDLYYRLNV+ + + PLR+ +DI+ F+ + E L+ ++ Sbjct: 306 EGKFREDLYYRLNVINIEMIPLRERREDILIFANYFLNKINIEY-KTNTTLSKEVKRCFQ 364 Query: 409 RYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRF 468 Y+WPGN+R+L N I + D + ++ D+ + V + E L + + Sbjct: 365 GYSWPGNIRELDNVIRSSYASCDEFIIQLTDLPAKMVSSHNVNSFSGSGEKMLKNMVDSY 424 Query: 469 ERSVLTQLYRNYPSTRK-LAKRLGVSHTAIANKLREYGLSQKK 510 E S++ ++ + + A LG+ + + K+ ++G+ KK Sbjct: 425 ESSIIKEVLKKCNWNCQLTANELGIHRSLLYKKMDKFGIKVKK 467 >UniRef50_UPI00016C5695 DNA-binding protein Fis / transcriptional regulator, Fis family n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5695 Length = 635 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 157/455 (34%), Positives = 222/455 (48%), Gaps = 26/455 (5%) Query: 79 HLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWL 138 L E P + DM+S+ AN + ++ G K + L+ + L Sbjct: 182 EERFRDLFEEAPVAYVHEDMESRFIRANRTALRVLGLKPEEAVGTVGMSLVPDTPDAQRL 241 Query: 139 ESEPQDSHNEHVVINGQNFLM----EITPVYLQ-----DENDQHV------LTGAVVMLR 183 E S G + + P+++Q D Q +T V+M R Sbjct: 242 VKEAFASIGRGTDTGGVVLELRRKDDGRPIWIQWWSRPDRGGQFTRTVFIDVTERVLMER 301 Query: 184 STIRMGRQLQNVAA--QDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKD 241 R+ +Q + + F +IV SP + V+++ K+A + +LITG+TGTGK+ Sbjct: 302 EQARLQQQNVYLQEELKAAHNFDEIVGQSPALVSVLQRVSKVAGTDSTVLITGETGTGKE 361 Query: 242 LFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGS 294 L A A H ASPR KP + LNCA++P VESELFGH A K G FE A+GG+ Sbjct: 362 LVARAVHSASPRKAKPLIKLNCAALPTHLVESELFGHEKGAFTGAVARKPGRFELADGGT 421 Query: 295 VLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFRE 354 + LDE+GE+S QAKLLR L + F RVG V VDVRVI AT ++L +LV++G FR Sbjct: 422 LFLDEVGELSLEAQAKLLRVLQEREFERVGGTAPVKVDVRVIAATNRDLAQLVKEGAFRA 481 Query: 355 DLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPG 414 DL YRLNV + LP LR+ P DI L FV +FA G +++ D L Y WPG Sbjct: 482 DLLYRLNVFPVRLPALRERPGDIPLLVRFFVTKFAGRLGKRIERVSGDTLDALVGYDWPG 541 Query: 415 NVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLT 474 N+R+L+N I RA DG EL +LP G A SL + + RSVL Sbjct: 542 NIRELENVIERAAILSDGPELVIDPDVLPVTRGGAAPAG--AGGQSLVAVEADHIRSVLA 599 Query: 475 QLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQK 509 Q A LG+ + +++++ G+ + Sbjct: 600 QTGWVIEGPNGAATVLGLHPNTLRSRMKKLGILRP 634 >UniRef50_C0GGJ4 Putative sigma54 specific transcriptional regulator n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GGJ4_9FIRM Length = 581 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 125/460 (27%), Positives = 228/460 (49%), Gaps = 30/460 (6%) Query: 72 WMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLING 131 + ++ L ++E+ + + D + N A ++ G K + + +L++ Sbjct: 116 FKEEKKVAEELQDIIESSYDGMWITDGQGYTLHVNSAYERISGMKKEEVLGKHMQELVDK 175 Query: 132 FNF-----LRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTI 186 F L LE + + + + G+ L+ P++ ++ V+T V + + Sbjct: 176 GYFSDSVTLHVLEKKERVTMMHEIRKTGKRALITGNPIFDENGEIVRVVTN-VRDITELL 234 Query: 187 RMGRQLQNVAAQDVSA------------FSQIVAVSPKMKHVVEQAQKLAMLSAPLLITG 234 + + L++ A Q + IV SP+M+H+ + A + + + +LI G Sbjct: 235 NLKQDLEDKAKQAARYQNELAQLRSKSIYDDIVVESPQMRHIFDLATWVGQVDSTVLILG 294 Query: 235 DTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGF 286 ++G GK++ ++S R +P++ +NC +IPE+ +ESELFG+ GK G Sbjct: 295 ESGVGKEVVTQIVVRSSERRDEPFIKVNCGAIPENLLESELFGYEKGSFTGADKKGKPGM 354 Query: 287 FEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVEL 346 FE A+ G++LLDE+ E+ +Q KLLR + + RVG + +DVR+I AT ++L EL Sbjct: 355 FELAHKGTILLDEVAEIPLNLQVKLLRAIQEQEIIRVGGTKPLKLDVRIIAATNRDLDEL 414 Query: 347 VQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTV 406 V+ G FREDL+YRLNV+ + +PPLR+ +DI L ELF+ ++ ++ + LA + Sbjct: 415 VRTGQFREDLFYRLNVIPITVPPLRERREDIPALIELFLCKYNEKYRLN-KTLAPETVER 473 Query: 407 LTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVG---EDAMEGSLDE 463 L Y WPGNVR+L+N + R + E+ P + L + + L + Sbjct: 474 LVSYDWPGNVRELQNIVERMVVLSRDDEVGPDALPLQLKSVGKTDADFHVDVSGVVPLKD 533 Query: 464 ITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLRE 503 E+ ++ + + Y +TR+ A+ LGV + + K + Sbjct: 534 ALFEVEKKLVVKALQKYGTTRRAAEALGVDQSTVVRKYQR 573 Score = 76.3 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 50/131 (38%), Gaps = 7/131 (5%) Query: 82 LSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESE 141 L +L+++ +++ D ++ + N ++ ++ GQ D+L Q+ L + + Sbjct: 8 LQTVLDSVYNGIVACDTDGRIILINESAARVAGQPKDKLMGARVDQVFPNTGLLEIIRTG 67 Query: 142 PQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVS 201 H + + G+ L +P+ D L GA+ + + + + Sbjct: 68 ENRPH-QRLNFQGRLLLSNRSPIRNADGE----LVGAIGVFQDNSELESMTHAFKEEKKV 122 Query: 202 A--FSQIVAVS 210 A I+ S Sbjct: 123 AEELQDIIESS 133 >UniRef50_C8X1R7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X1R7_DESRD Length = 471 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 126/462 (27%), Positives = 218/462 (47%), Gaps = 30/462 (6%) Query: 80 LALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQL----------I 129 L+ +++++ E V ++D++ ++ N + + G + L Sbjct: 12 RFLNQIMDSMAEGVFTLDVQGRITSWNRSMEDITGYSASEALGRSCRFLGFSHCLGTLCP 71 Query: 130 NGFNFLRWLESEPQDSHNEHVV-INGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRM 188 + L E ++ + G++ + ++D+N + L G V + + Sbjct: 72 ADIHQCGILRHEQPEAKECVLRHREGRDVPVIKQARVVKDDNGE--LIGIVETVTDMTEL 129 Query: 189 GRQLQNVAAQ-----DVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLF 243 + + I+ S M+ V + + A + +LI G++GTGK+L Sbjct: 130 QKARHKAEEATRLLGQHYSLGNIMGKSEVMQEVFSRVRAAAASRSTVLIQGESGTGKELI 189 Query: 244 AYACHQASPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVL 296 A A H S +A +P++ +NC+++ E +ESELFGH A + G FE+A+ GS+ Sbjct: 190 ARAIHYNSDQADQPFVTVNCSALTETLLESELFGHVKGAFTGAVRDRAGRFEEAHRGSIF 249 Query: 297 LDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDL 356 LDEIGE+S +Q KLLR L + RVG+ +D+RVI AT ++L EL+ +G+FR+DL Sbjct: 250 LDEIGELSQTIQVKLLRVLQEREVERVGDSQTRTIDIRVIVATHRDLNELLAQGVFRQDL 309 Query: 357 YYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNV 416 YYRL V + LPPLR +D+ L F+A+ + G LA + ++ Y WPGNV Sbjct: 310 YYRLKVFPITLPPLRQRREDLPLLVNHFIAKQNEATGKRVTGLAPEAMRLVFEYHWPGNV 369 Query: 417 RQLKNAIYRALTQLDGYELRPQDILLPDYDAATVA-----VGEDAMEGSLDEITSRFERS 471 R+L+NAI A G +++ D+ G GS Sbjct: 370 RELENAIEHAFVLTSGEQIQVNDLPAEIITPRPSPERAREAGVPRTAGSRQHHEQPDREQ 429 Query: 472 VLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKKNEE 513 +L L N + +A++LGVS TA+ ++++G+ + + Sbjct: 430 LLALLEANQWNKAAVARQLGVSRTAVWKYMKKWGIPLQPEPD 471 >UniRef50_C1PBV8 Putative sigma54 specific transcriptional regulator n=1 Tax=Bacillus coagulans 36D1 RepID=C1PBV8_BACCO Length = 553 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 136/436 (31%), Positives = 223/436 (51%), Gaps = 19/436 (4%) Query: 79 HLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWL 138 HL L++++ EP VD ++ N LF ++ L Q I + Sbjct: 123 HLETRKLIQSITEPFCLVDQDGRIQEMNEHMASLFRKRRTTLMGEKITQYITKEKWESIK 182 Query: 139 ESEPQDSHNEHV-VINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAA 197 + +D V I G+ + I V +N Q +++ +++ Q A Sbjct: 183 SGKEKDETVVQVPRIKGEAYFATIQLV----KNKQGIVSYMILLKSKKTEKPEQ----AG 234 Query: 198 QDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKP 257 + + F I+ VS +K ++ A++++ +++ G++GTGK++FA A H S R +P Sbjct: 235 RRLYHFEDILGVSEILKQTIQSAKRVSKSDVTIMLRGESGTGKEMFAQAIHHESERKNQP 294 Query: 258 YLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAK 310 ++ALNCA+IPE+ +ESELFG+ A + K G FE AN G++ LDEIG+MS +QAK Sbjct: 295 FVALNCAAIPENLLESELFGYEKGAFTGAEKEKPGRFELANHGTLFLDEIGDMSLYLQAK 354 Query: 311 LLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPL 370 +LR L + T R+G + +DVR+I AT +NL EL++KG FREDLYYR++V+ + +PPL Sbjct: 355 ILRVLQEKTLERIGSNKSRKIDVRIITATHRNLEELIRKGEFREDLYYRISVIPIYIPPL 414 Query: 371 RDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQL 430 R +D+ L E F+ +F+ + LAA+ L +Y WPGN+R+L+N + + Sbjct: 415 RARKEDLPILIEHFIQKFSKDLNRDSKNLAAETLDRLMQYDWPGNIRELQNVVRHFVELQ 474 Query: 431 DGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYP---STRKLA 487 G + + + A + + T +R VL L RN +K A Sbjct: 475 IGDTVTLESLPSSLQRGAKSFPPSVKPKRTNHYQTRLEKRKVLELLERNGWSTEGKKKTA 534 Query: 488 KRLGVSHTAIANKLRE 503 LG+S + L++ Sbjct: 535 ADLGISLATLYRYLKK 550 >UniRef50_A1HS80 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HS80_9FIRM Length = 648 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 144/508 (28%), Positives = 247/508 (48%), Gaps = 48/508 (9%) Query: 26 IDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSAL 85 + +E+ + I E+ + E +RI V D ++ L + Sbjct: 157 VSKLLLEVREVRLIM-----SGAEAVCEAIEEAQRIIKVQD-------KEKKSAEQLRTI 204 Query: 86 LEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDS 145 L + + V+++D K+ + NP++ +F K ++ Q+I L L+ + Sbjct: 205 LSFIHDGVIAIDNTGKITVINPSAESIFKLKNTQVIGKNIKQVIPNTKMLDVLKHGKAEI 264 Query: 146 HNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQ------- 198 +G + P+ + E + G V + R+ + Q + + Sbjct: 265 EQLQNTPSGM-VVTNRVPIEINGE-----IMGVVATFKEAGRIQQTEQKIRTKLYSQGLY 318 Query: 199 DVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPY 258 +F I+A P+M+ ++E+A++ A +LI ++G GK+LFA + HQAS R P+ Sbjct: 319 AKYSFENIMAWDPEMRRIIERAKRYARTDGTVLIEAESGCGKELFAQSIHQASSRCRGPF 378 Query: 259 LALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAK 310 +A+NC+++P +ESELFG+ EGK G E A+GG++ LDEIG+M +QA+ Sbjct: 379 VAINCSALPTQLLESELFGYVEGAFTGARKEGKPGLIELAHGGTLFLDEIGDMELTLQAR 438 Query: 311 LLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPL 370 LLR L + R+G D + VD+R++ AT L + V +G FR DL++RLNVL L++PPL Sbjct: 439 LLRVLEERQVMRLGADKWLPVDIRIVAATNAPLKQRVLRGQFRMDLFHRLNVLNLSIPPL 498 Query: 371 RDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYR-ALTQ 429 R +DI+PL E F+A FA++ G +L A +L RY+WPGNVR+L+N + R +L Sbjct: 499 RHRREDIIPLAEYFLAEFANKYGQRPIELTAAAKDILLRYSWPGNVRELRNIMERISLVY 558 Query: 430 LDGYELRP--QDILLPD-----------YDAATVAVGEDAMEGSLDEITSRFERSV-LTQ 475 + ++ +D L A T + L + +R + ++ Sbjct: 559 EEAQDVSAILRDFLGNSDYCNNSDYSTLELAKTGMLAVTPERFLLPQSIRDMKRQLAIST 618 Query: 476 LYRNYPSTRKLAKRLGVSHTAIANKLRE 503 L + K AK+LG++ + LR+ Sbjct: 619 LAACGGNKSKAAKQLGITRATLDRLLRQ 646 >UniRef50_B8FXN8 Putative sigma54 specific transcriptional regulator n=2 Tax=Desulfitobacterium hafniense RepID=B8FXN8_DESHD Length = 574 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 130/457 (28%), Positives = 231/457 (50%), Gaps = 34/457 (7%) Query: 79 HLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWL 138 + L A++E++ + ++ + AN A Q+ G + +LIN + + Sbjct: 125 NNDLDAIIESVADGIVVGSADGMILRANSAYLQITGIQEKEFVGKNVRELINQGYMNKSV 184 Query: 139 ESEPQDSHNEHVVIN---GQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRM------- 188 + + V++ G+ LM PV+ N++ +T V ++R + Sbjct: 185 TEMVFRTKSRVNVVDIRSGKELLMTGAPVF----NEEKEVTRVVTIVRDISELTELKGKL 240 Query: 189 -------GRQLQNVAA-QDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGK 240 R L+ + + +AF +I+ + M+ ++ A +A + + +LI G++G GK Sbjct: 241 EQAEDAKNRYLKELEHFRSQNAFKKIITKNNDMQKKLDTAYHVARVDSTVLILGESGVGK 300 Query: 241 DLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANG 292 +L A H+AS R+ KP++ +NC +IP + +ESE FG+ EGKKG FE A+G Sbjct: 301 ELIAQLIHRASHRSEKPFIKINCGAIPANLLESEFFGYEAGSFTGALKEGKKGLFELADG 360 Query: 293 GSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMF 352 G++ LDE+GE+ Q K+LR + + RVG + +D+R+I AT ++L ++++ F Sbjct: 361 GTLFLDEVGELPLEHQVKVLRAIQEKEILRVGGKKTIKLDIRIIAATNRDLEAMIREKAF 420 Query: 353 REDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAW 412 REDLYYRLNV+ + +PPLR +D++P+ +AR+ G + + ++ L Y W Sbjct: 421 REDLYYRLNVVPMTIPPLRQRKEDVIPIALELLARYNTAYGYQKW-IHPEVMDCLLNYDW 479 Query: 413 PGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSV 472 PGN+R+L+N I R + + + Y A SL + E + Sbjct: 480 PGNIRELENTIERLVVTSMDDCITKDAMAEIKYIDVHPAPNGLT---SLKAFLEKEENRL 536 Query: 473 LTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQK 509 L + YR STRK A LG+S +++ K+++YG+ + Sbjct: 537 LEEAYRLMGSTRKAAAVLGISQSSMVKKMKKYGIEIQ 573 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 12/101 (11%), Positives = 43/101 (42%), Gaps = 6/101 (5%) Query: 85 LLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQD 144 + +++ V+++D + + + N A+ ++ G + ++I + L L++ + Sbjct: 14 IFDSIYNGVVAIDQQGIIKLFNEAAAKIMGVAKEETIGRRVEEVIPNTSLLEILKTGKAE 73 Query: 145 SHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRST 185 +N+ + + + P+ + + GA+ + + Sbjct: 74 -NNQKMHLGNCEIISNRGPICKDGK-----IVGAIGVFQDI 108 >UniRef50_C5DAI7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=4 Tax=Geobacillus RepID=C5DAI7_GEOSW Length = 569 Score = 481 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 138/464 (29%), Positives = 225/464 (48%), Gaps = 34/464 (7%) Query: 60 RIAGVTDVRTVPWMPSEREHL---ALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQK 116 + G V E H + ++E + + VD M N A + G + Sbjct: 97 ELIGAIGVLE-DISQMEHYHTLLKQMETIIEFSTDGIYVVDQNGITTMVNSAYEAITGFR 155 Query: 117 LDRLRNHTAAQLINGFNF---LRWLESEPQDSHNEHVVINGQ-NFLMEITPVYLQDENDQ 172 + L L+ F + L + + + I G+ + ++ PV+ ++ D Sbjct: 156 REELVGKHMYDLVKKGYFDQSVSLLVLQQKKRISILQKIGGKKDVIVTGNPVF-NEQGDI 214 Query: 173 HVLTGAVVMLRSTIRMGRQLQNVAA-----QDVSAF------SQIVAVSPKMKHVVEQAQ 221 ++ +V + I+M +L+ + Q F QIV SP MK + ++ + Sbjct: 215 EMVVTSVRDISHLIQMKAELEKAKSFSEMSQHRYTFSVDGSKEQIVFRSPSMKQLFDKVE 274 Query: 222 KLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE 281 ++A +L+TG +G GK++ A H SPR KP++ +NC +IPE +ESELFG+ Sbjct: 275 QIAPYPTTVLLTGPSGVGKEVIANLIHHLSPRKNKPFIKVNCGAIPEPLLESELFGYEKG 334 Query: 282 --------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDV 333 GK G E A+ G+++LDEIGEM +Q KLLR L + +R+G +DV Sbjct: 335 AFTGARQDGKIGLLELADKGTIMLDEIGEMPLSLQVKLLRVLQEKQVQRIGSHKTKKLDV 394 Query: 334 RVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQG 393 R+I AT +NL EL+ +G FREDLYYRL V+ + +PPL + P+DI PL + + + + Sbjct: 395 RIIAATNQNLKELISQGKFREDLYYRLQVIEMYIPPLAERPEDIEPLIDHYFSFYCKLYR 454 Query: 394 VPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVG 453 + L+ +L RY WPGNVR+LKN + + + + P D+ L YD Sbjct: 455 IN-KHLSPKTKEILQRYHWPGNVRELKNLMENMVVSVPSQLIEPHDLPLHIYDQTAATSP 513 Query: 454 EDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAI 497 +L E +FER ++ + S RK A++LG+ H+ + Sbjct: 514 -----LTLKERVEQFERRLIYEAIEKNTSLRKAAQQLGIDHSTL 552 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 6/107 (5%) Query: 83 SALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEP 142 + ++ V+ VD K+ + N ++ +L + + LI LE+ Sbjct: 12 ENIFFSIHNGVIVVDRNGKILLINASAKKLLQIENENWEGKDIRDLIPTTQLPHVLENGT 71 Query: 143 QDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMG 189 + I G+ L+ TP+Y E L GA+ +L +M Sbjct: 72 SSI-GVKMNIAGRQCLVNRTPLYRNGE-----LIGAIGVLEDISQME 112 >UniRef50_C9S255 Proprionate catabolism activator, Fis family n=2 Tax=Geobacillus RepID=C9S255_GEOSY Length = 639 Score = 481 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 136/453 (30%), Positives = 226/453 (49%), Gaps = 24/453 (5%) Query: 77 REHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLR 136 + + A++ A+ E +L VD + NP + +L G + + ++ Sbjct: 187 EKRQKIQAMMRAVHEGILYVDTNGLLMEINPVAEKLLGVSAQDVIGKSIDKVAPEIKLDD 246 Query: 137 WLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVA 196 + + G L+ PV Q E L GAV ++ + + + + Sbjct: 247 VFKRGKPLLNVAQKTKQGM-LLVNRIPVVHQGE-----LIGAVATIQDAQAVQKAEKAIR 300 Query: 197 AQ-------DVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQ 249 + + F I+ + ++++AQ A A +LI G+TGTGK+LFA + H Sbjct: 301 HRVYSKGLLAKATFEHIIGKNSTFMKLIDKAQHYAQTDATILIRGETGTGKELFAQSIHN 360 Query: 250 ASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIG 301 AS R P++A+NCA++PE +ESELFG+ GK+G FE A+ G++ LDEIG Sbjct: 361 ASNRNRHPFVAVNCAALPESILESELFGYEEGAFTGARKGGKQGLFELAHRGTIFLDEIG 420 Query: 302 EMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLN 361 EMS +Q++LLR L + R+G D + +DVR+I AT ++L +V+ G+FR+DLYYRLN Sbjct: 421 EMSLPLQSRLLRVLQEKEVMRLGSDMVIPIDVRIIAATNRDLKSMVKDGLFRQDLYYRLN 480 Query: 362 VLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKN 421 VL++ LPPLR+ D+ L F+ + ++ + L+ + VL + WPGN+R+L+N Sbjct: 481 VLSIELPPLRERLDDLPDLFRFFLKNYKLDKQLIEKVLSI-MLPVLCHHNWPGNIRELEN 539 Query: 422 AIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRN-Y 480 R L + ++L + E L + +ER + Q+ R Sbjct: 540 IAERVSVLLK-AHVTMDEVLAEVKKELFGSHIEILDSTDLTKEVENWERQRILQVLREVR 598 Query: 481 PSTRKLAKRLGVSHTAIANKLREYGLSQKKNEE 513 S K A LG+S T + K+++YG+ + +EE Sbjct: 599 GSKTKAAALLGISRTTLWRKIKDYGIDRYDDEE 631 >UniRef50_Q5WF71 Sigma-L-dependent transcriptional regulator n=2 Tax=Bacteria RepID=Q5WF71_BACSK Length = 657 Score = 481 bits (1238), Expect = e-134, Method: Composition-based stats. Identities = 141/461 (30%), Positives = 226/461 (49%), Gaps = 25/461 (5%) Query: 64 VTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNH 123 VTD+R++ M L A++ + + + VD M NPA +L G D++ Sbjct: 205 VTDLRSIQTM--------LEAIINSSNDAISVVDENGTGLMVNPAYTKLTGLDSDQIIGQ 256 Query: 124 TA-AQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVML 182 A A + G + + + + + + + + + + G + + Sbjct: 257 PATADISEGESIHMQVLRTKKPVRGARLKLGPHKKDVIVNVAPVVVDGELKGSIGVIHDV 316 Query: 183 RSTIRMGRQLQNVAAQ-----DVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTG 237 R+ QLQ+ + +FS+IV S +M +EQA++ A S P+L+ G+TG Sbjct: 317 SELNRLSSQLQHAQKRLATLEATYSFSEIVGTSKEMAFAIEQAKRGAKTSFPILLLGETG 376 Query: 238 TGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQ 289 TGK+LFA+A H S R G+P++ +NCA++ E +ESELFG+ GKKG FE+ Sbjct: 377 TGKELFAHAIHNESERKGQPFVRVNCAALTETLLESELFGYEQGAFSGALKSGKKGLFEE 436 Query: 290 ANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQK 349 A GS+ LDEIGEMSP QAKLLR L + RVG + + VRVI AT +L +++ Sbjct: 437 AEHGSIFLDEIGEMSPNTQAKLLRVLQEQEIVRVGGTKPIPIHVRVIAATNVDLEGAIRE 496 Query: 350 GMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTR 409 FREDLYYRLN L + +PPLR+ D+ L + + + + G ++ + + Sbjct: 497 RRFREDLYYRLNKLPIRIPPLRERLSDLPALIDHLLRKLNLDYGHNIQSISKLVLSRFEG 556 Query: 410 YAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDY--DAATVAVGEDAMEGSLDEITSR 467 Y WPGNVR+L+N + R++ +D D+ LP + + L + Sbjct: 557 YYWPGNVRELENVLARSMIYMDLGATELTDVSLPQEFGQSGKREESDATAPKQLQAFLAE 616 Query: 468 FERSVLTQLYRNYPS-TRKLAKRLGVSHTAIANKLREYGLS 507 E+ L + + AK LG+S ++ KL +Y L+ Sbjct: 617 KEKEHLRRTLAEVDGVKTEAAKLLGISIRSLYYKLEKYNLA 657 Score = 59.7 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 20/142 (14%), Positives = 53/142 (37%), Gaps = 7/142 (4%) Query: 71 PWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLIN 130 + + ++ L + + A+ + ++ V+ ++V N A+ + G +L + L+ Sbjct: 86 KVLEAIKDDLLMKKAIHAIQDGMIVVNRFAQVQFMNEAAAHMAGVELAKAIGKPIQTLLP 145 Query: 131 GFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGR 190 R +E++ + + H NG + P+ +GA+ + + + Sbjct: 146 SSGLPRVIETQQPEYNQLHEFDNGTVIVTTRVPLIF-----GGACSGAIAVFKDVTEATQ 200 Query: 191 QLQNVA--AQDVSAFSQIVAVS 210 + V + I+ S Sbjct: 201 LAEQVTDLRSIQTMLEAIINSS 222 >UniRef50_B9M8I7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Geobacter sp. FRC-32 RepID=B9M8I7_GEOSF Length = 678 Score = 480 bits (1237), Expect = e-134, Method: Composition-based stats. Identities = 131/473 (27%), Positives = 223/473 (47%), Gaps = 26/473 (5%) Query: 43 FAELEFESFSSLMAEIRRIAGV-TDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSK 101 + ++ + ++ ++ + GV ++ TV + L +LE E V +D Sbjct: 215 YQNMKNKGVIFVIQDMTDVEGVAHELETVKELKM-----TLETVLEVAYEGVAVLDEAGM 269 Query: 102 VDMANPASCQLFGQKLDRLRNHTAAQLIN---GFNFLRWLE--SEPQDSHNEHVVINGQN 156 + + N C G+ D + + I L LE ++P + G Sbjct: 270 ITLVNARFCNKIGKPKDNIIGENINRFIPLSHNQMPLSVLEINAKPCVVSTLPITKEGNT 329 Query: 157 FLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHV 216 + +Y +N ++ + +L V IV ++ + Sbjct: 330 KGFVVK-IYEDLDNLADIVQQINRINMQLNYYKNELYKVNGT-SYTVGSIVCRDERIATL 387 Query: 217 VEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELF 276 Q ++ ++ +LITG++GTGK+LFA++ H AS R +P++ +NC++IP + E+ELF Sbjct: 388 KSQVLQVGRSNSTVLITGESGTGKELFAHSIHNASNRRKEPFIKVNCSAIPGELAEAELF 447 Query: 277 GHA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHE 328 G+ +GK G FE A+ G++ LDEIG+M +Q+KLLR + D RVG Sbjct: 448 GYEDGAFTGARKQGKPGKFELADCGTIFLDEIGDMPLALQSKLLRVIQDKEIERVGGVKA 507 Query: 329 VHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARF 388 VDVR+I AT ++L +V +G FREDLY+R+NV+ L +PPLRD +DI L + F+ ++ Sbjct: 508 RKVDVRIIAATNRDLKRMVTEGTFREDLYFRINVVELKIPPLRDRRKDIPLLADTFIRKY 567 Query: 389 ADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAA 448 ++ G + LTRY WPGN+R+L+N I R L + + QD LP+ Sbjct: 568 NNQLGRRVEGITEAALEALTRYDWPGNIRELENIIERMLNYRESGLIELQD--LPEEIVG 625 Query: 449 TVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKL 501 +L + ++ L + + K A+ LG+S + + KL Sbjct: 626 RPGGMAAKATQTLAVMEMETIQAALAEA---GGNKSKAARLLGISRSKLYEKL 675 >UniRef50_A8RIT6 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RIT6_9CLOT Length = 639 Score = 479 bits (1235), Expect = e-134, Method: Composition-based stats. Identities = 139/461 (30%), Positives = 237/461 (51%), Gaps = 23/461 (4%) Query: 67 VRTVPWMPSEREHLAL-SALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTA 125 VRTV + ERE A+ + + + + VL VD++ + + NPA+ +++ +L+ + Sbjct: 184 VRTVDVVRMERERSAMFTTITQTAMDGVLYVDIQQTIKICNPAALKMYTGPKKKLQGLSL 243 Query: 126 AQLIN-GFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRS 184 + + S + N+ + I PV + +TG VV + Sbjct: 244 QSAFPFLSEPVSTVISTGTELPNQLIRWKNYTINATIHPVIIN-----SRITGIVVTFQD 298 Query: 185 T-------IRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTG 237 I++ +++ + F+ I+ SP++ +V+E+A+K A +S+ +LI G+TG Sbjct: 299 VTQIQQVEIQIRKKMTDKGLNAHYHFNDIIHESPEIDYVIEKAKKFASVSSNILIEGETG 358 Query: 238 TGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH--------APEGKKGFFEQ 289 TGK+LFA + H AS R P++A+NCA++PE+ +ESELFG+ A GK G FE Sbjct: 359 TGKELFAQSIHNASTRCNGPFVAVNCAALPENLLESELFGYVEGAFTGTAKGGKTGLFEL 418 Query: 290 ANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQK 349 A+ G++ LDEI E+ +Q KLLR L + RRVG D + VDVR+I AT +L + ++ Sbjct: 419 AHKGTLFLDEISEIPLSIQGKLLRVLQEHEVRRVGGDRVISVDVRIIAATNHSLSRITEQ 478 Query: 350 GMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTR 409 G FR+DL YRLNVL L LPPLR D L ++ + + G P +A +L+ Sbjct: 479 GRFRQDLLYRLNVLKLFLPPLRRRCGDTKILFLHYLNLYYRQLGRIIPHVATAAIQMLSD 538 Query: 410 YAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFE 469 Y +PGN+R+L+N R + E D + + V + + + E Sbjct: 539 YHFPGNIRELRNVTERLVVICMDKEEITADDMREALHPEELPVKFQSTDMPIPPFYQDGE 598 Query: 470 RSVLTQ-LYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQK 509 R L + L + + A++LG++ T + +++++G+ + Sbjct: 599 REFLIRILEESNYNQTLTAEKLGINRTTLWRRMKKHGIRRP 639 >UniRef50_Q1JWW3 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JWW3_DESAC Length = 658 Score = 479 bits (1235), Expect = e-134, Method: Composition-based stats. Identities = 145/449 (32%), Positives = 226/449 (50%), Gaps = 26/449 (5%) Query: 79 HLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWL 138 + LS L + + + L +D +V NP + ++FG L ++I + + Sbjct: 212 NAQLSHLFQTMSDGALVIDADGRVIQVNPVARKVFG---KELSGEKLNRIITAADSPDLI 268 Query: 139 ESEPQDSHNE---HVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNV 195 S + H L+ + P L+D+N +GAVV +M + + Sbjct: 269 SSTHSCKDLDVVLHTETEPVEALLTVKP--LKDDNSDQ--SGAVVFFNPIRKMKKLVNRF 324 Query: 196 A-AQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRA 254 AQ FS I+ +K + A+K A + +LI G++GTGK+L A A H S R Sbjct: 325 GGAQATFHFSDIIGEHDSVKAAINMARKAADNLSHVLILGESGTGKELLAQAIHNHSMRR 384 Query: 255 GKPYLALNCASIPEDAVESELFGH--------APEGKKGFFEQANGGSVLLDEIGEMSPR 306 P+LA+NCA++P D + SELFG+ +P+G+ G FE A+GG++LLDEIG+M Sbjct: 385 NGPFLAVNCAALPRDLIASELFGYTSGAFTGASPKGRPGKFEMASGGTLLLDEIGDMPLD 444 Query: 307 MQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLN 366 QA LLR L D R+G + + VDVRVICAT KNL++ V KG FR+DLYYRLNV ++ Sbjct: 445 QQATLLRVLQDKHVTRLGSERAIPVDVRVICATNKNLLDAVSKGHFRQDLYYRLNVTRID 504 Query: 367 LPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRA 426 +PPLR+ +D+ L + + + RP + + T L Y WPGNVR+L+N + R Sbjct: 505 VPPLRERGRDVELLFRFLLKKISLRLHQARPHVDEAVVTALLHYGWPGNVRELENVVERM 564 Query: 427 LTQLDGYELRPQDIL------LPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNY 480 + ++ L + P A +V +L ++ ER +L L + Y Sbjct: 565 IHTVEEETLHCAHLPREICCETPVGRALPDSVVTTQDAATLKQVVGEQERRLLVDLLQRY 624 Query: 481 -PSTRKLAKRLGVSHTAIANKLREYGLSQ 508 + +A+ + VS I K+ Y +S+ Sbjct: 625 QGNISLIAREMAVSRNTIYRKMHHYNISR 653 >UniRef50_A1HSG4 Putative PAS/PAC sensor protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HSG4_9FIRM Length = 559 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 148/474 (31%), Positives = 242/474 (51%), Gaps = 40/474 (8%) Query: 66 DVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTA 125 ++R + E + L A+ E+ + ++ D N + ++ G + + TA Sbjct: 82 ELRDLVINKLEEINKELEAIFESSHDGIVVADENGVFIRINSSYERITGIPREEIIGKTA 141 Query: 126 AQLIN-----GFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVV 180 ++ + L++ + ++ +G+ ++ +PV+ + + V Sbjct: 142 QSIVEKGLVSDSVTIHVLKTGQSHTFSQ-TFRSGRQSVITGSPVFDSNNR----IIRVVT 196 Query: 181 MLRSTIRMGRQLQNVA--AQDVSAFSQI--------------VAVSPKMKHVVEQAQKLA 224 +R + R + +A + ++ +SQI + S KM+ V + A K A Sbjct: 197 NVRDMTEINRLKEELAESQKKLTQYSQIVETMTEEQMFNEKLIFRSRKMEVVRDSAIKFA 256 Query: 225 MLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA----- 279 + APLLITG++G GK++ A ++ SPR G P+L +NC +IPE +ESELFG+ Sbjct: 257 KVDAPLLITGESGVGKEVIADLVYRYSPRKGLPFLKINCGAIPETLLESELFGYEGGAFT 316 Query: 280 ---PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVI 336 EG+ G FE ANGG+V+LDEIGE+ +Q KLLRF+ F RVG V VDVR+I Sbjct: 317 GAKKEGRTGLFEMANGGTVMLDEIGELPLALQVKLLRFVQQKEFYRVGGKKVVKVDVRLI 376 Query: 337 CATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPR 396 AT ++L E+V + FR DL+YRLNVL +++PPLR+ P+DI+PL + ++ + V Sbjct: 377 AATNRDLQEMVNQKQFRSDLFYRLNVLRIHIPPLRERPEDIIPLVNYLLDKYNKKYNVS- 435 Query: 397 PKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGED- 455 +++ D+ T Y W GNVR+L+N I R + D E+ LPD + V D Sbjct: 436 KRISGDVYHAFTNYTWVGNVRELENLIERLVVICDRDEITLD--YLPDEMKKAIYVWRDD 493 Query: 456 --AMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 E + E FER + Y S+R+ A++LG+ H+ I K +YG+ Sbjct: 494 SIGREQTYKEAKEEFEREFFCRALEKYKSSRQAAEKLGLDHSTIVKKAAKYGIK 547 >UniRef50_B0K2Z9 Sigma54 specific transcriptional regulator, Fis family n=5 Tax=Thermoanaerobacter RepID=B0K2Z9_THEPX Length = 575 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 130/451 (28%), Positives = 230/451 (50%), Gaps = 29/451 (6%) Query: 82 LSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLING----FNFLRW 137 L A + + D + ++ +++G K + L ++L + + Sbjct: 123 LDAFMACSDDLACITDGSGLKVRISSSAEKIYGLKPEDLIGKNVSELEKNGMYFPSATKI 182 Query: 138 LESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVM-----LRSTIRMGRQL 192 E + G+ L+ TP + +D N + +++ + + L++ ++ ++L Sbjct: 183 AIEEKKKVTVIQKTKTGRKLLVTATPFFDKDNNIKRIVSISKDITDEEKLKTELKQTKEL 242 Query: 193 QNVAAQDVSAF-------SQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAY 245 +++S+ S+I+ S +M+ ++E K+A + +LI G+TG GK++ A Sbjct: 243 LQKYEEELSSLRIAHLKNSEIIYRSKQMERLIELVNKVAPTESTILIYGETGVGKEVLAK 302 Query: 246 ACHQASPRAGKPYLALNCASIPEDAVESELFGHAP--------EGKKGFFEQANGGSVLL 297 H S R+ P++ +NC +IPE+ +E+ELFG+ EGK G E A+ G++LL Sbjct: 303 YIHNIS-RSEGPFIKINCGAIPENLLEAELFGYEKGAFTGAKSEGKPGLIEVADKGTLLL 361 Query: 298 DEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLY 357 DEI E+ +Q KLLR L + F RVG + VDVR+I A+ K+L ELV++G FR+DLY Sbjct: 362 DEISELPLSLQVKLLRVLQEKEFIRVGGIKPIKVDVRIIAASNKDLKELVKEGKFRQDLY 421 Query: 358 YRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVR 417 YRLNV+ + +PPLR+ QDI L F+ + ++ G +L ++ + +Y WPGNVR Sbjct: 422 YRLNVVPVTIPPLRERVQDIPILAYHFLNMYNEKYGHS-KQLTNEVMEIFMKYPWPGNVR 480 Query: 418 QLKNAIYRALTQLDGYELRPQDI---LLPDYDAATVAVGEDAMEGSLDEITSRFERSVLT 474 +L+N I R + + ++ +D+ LL + + L E ++ E ++ Sbjct: 481 ELENVIERIVIISENDQITKKDLPGELLNQEETNHSFGVHVSRLMPLKEASALVEYQLIK 540 Query: 475 QLYRNYPSTRKLAKRLGVSHTAIANKLREYG 505 Q S+ K A+ LGV + I KL++Y Sbjct: 541 QAIEECGSSYKAAEVLGVDQSTIIRKLKKYE 571 >UniRef50_C0GEG9 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GEG9_9FIRM Length = 476 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 146/485 (30%), Positives = 239/485 (49%), Gaps = 48/485 (9%) Query: 60 RIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFG-QKLD 118 + +T+V V + E L ++E+ + ++ D + ++ AN + ++ G K+ Sbjct: 5 NVIHITEVDEVRRLKKE-----LDVIIESCYDGIILSDREGRIFRANQSMERVSGGIKVA 59 Query: 119 RLRNHTAAQLINGFNFL---RWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVL 175 L TA +L L + + + + +++ G + P Y +D+ Sbjct: 60 DLLGKTALELEKEGIILSQSKIILGKDPLTLKQNIR-TGVELFITSKPAY----DDRGRF 114 Query: 176 TGAVVMLRSTIRMGRQLQNVAAQDVSAF----------------SQIVAVSPKMKHVVEQ 219 V +R + R Q V +F ++V +S KMK + E+ Sbjct: 115 LFYVATIRDMTELSRLRQEVEETKDQSFRYYQELLQLRGQILEQDEMVVISRKMKDICER 174 Query: 220 AQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA 279 A ++A +LI+G +G+GK++ A H +SPR P++ +NC +IPE +ESELFG+ Sbjct: 175 AIRVAQTDTNVLISGPSGSGKEMIAKLIHNSSPRKSGPFVQINCGAIPETLLESELFGYE 234 Query: 280 PE--------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHV 331 GK G E A+ G++LLDEIG++SP +Q KLLR + + RVG + + Sbjct: 235 KGAFTGAGRQGKIGLMEMADLGTILLDEIGDLSPLVQVKLLRAIQEQVIYRVGSTTPIKL 294 Query: 332 DVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADE 391 +VR+I AT KNL ++V++ +FREDLYYRLNV+ +++PPLR+ + I+PL F+ F + Sbjct: 295 NVRIIAATNKNLEKMVEENLFREDLYYRLNVIPIHIPPLRERREAIVPLALHFLKSFNQK 354 Query: 392 QGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVA 451 G L+ ++ Y WPGNVR+L+N I R + D L P LP ++ A Sbjct: 355 HGTD-KSLSPEVCACFEEYDWPGNVRELENLIERMVVISDEKVLTP--YWLPRNVSSGQA 411 Query: 452 VGED-------AMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREY 504 D E SL + ER + + + S RK AK LGV H+ + K++ Sbjct: 412 PRSDMSPKQECTAEISLKQARESAERDAICRALSLHGSIRKAAKSLGVDHSTVVRKMKSL 471 Query: 505 GLSQK 509 GL K Sbjct: 472 GLEHK 476 >UniRef50_Q0AWW3 Sigma-L-dependent transcriptional regulator n=4 Tax=Clostridiales RepID=Q0AWW3_SYNWW Length = 696 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 139/513 (27%), Positives = 242/513 (47%), Gaps = 32/513 (6%) Query: 28 LRGIEIDPIGRIYL--NFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSERE-----HL 80 ++ +++ + +I L ++ I + + D+ + + E + + Sbjct: 183 IKSGQVETLQKIMLNNHYFISNRSPIIKDGEIIGAVGVLQDISELEELSRELKYVKELNE 242 Query: 81 ALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLES 140 L A++E+ + + D N A + G + + S Sbjct: 243 ELDAIIESSYDGLYITDGNGMTLRLNKAFEMITGINGREFLGRHVDDIAREGIVSESVSS 302 Query: 141 ----EPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGA-----VVMLRSTIRMGRQ 191 + +G+ L +PV+ + N V+ + ML+ + + Sbjct: 303 LALARKETVTIIQETRSGKTTLATGSPVFDKIGNIFRVVCNVRDITELNMLKQKLEQVQG 362 Query: 192 LQNVAAQD------VSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAY 245 L S +I++ S +M+ ++E +LA + + +LI G++GTGK+L A Sbjct: 363 LSQHYESQLKTLRIYSGTDKIISKSTEMRKLLETVVRLAEVDSTILINGESGTGKELIAE 422 Query: 246 ACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLL 297 H S RA KP++ +NC +IPE+ +ESELFG+ EGK G+FE A+ G++ L Sbjct: 423 TIHNHSARAKKPFIKVNCGAIPENLMESELFGYEYGAFTGAKKEGKAGYFELAHEGTLFL 482 Query: 298 DEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLY 357 DEIG++ +Q KLLR L RVG + VD R++ AT +NL+E+VQK FREDLY Sbjct: 483 DEIGDLPFNLQVKLLRVLQSKEINRVGGRQALKVDTRILAATNRNLLEMVQKKQFREDLY 542 Query: 358 YRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVR 417 YRL+V+ + +PPLRD +DI L F+A F + + +++ D+ +L Y WPGNVR Sbjct: 543 YRLHVIPVIIPPLRDRKEDIPSLIVHFIALFNRKYKLN-KRISPDVVDILMAYDWPGNVR 601 Query: 418 QLKNAIYRALTQLDGYELRPQDILLPDYDAA-TVAVGEDAMEGSLDEITSRFERSVLTQL 476 +L+N I R + + ++ + AA + L E ER +L + Sbjct: 602 ELENLIERLVVISSSDIISRDELPVHLSSAAVDNPQVSVSAIIPLKEAVESVERQLLERA 661 Query: 477 YRNYPSTRKLAKRLGVSHTAIANKLREYGLSQK 509 + Y +TR++A++L V+ + + K +YG+S Sbjct: 662 FAQYRTTRQMAQKLEVNASTVVRKAAKYGISPP 694 Score = 75.5 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 77/195 (39%), Gaps = 12/195 (6%) Query: 18 LDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSER 77 ++ L+ R I + E + +Y L + +M I R TD+ V Sbjct: 67 IEKLMKRDIIIGHPEEEIEDVLYPGLGRLPIADETGIMGMITR----TDLARVFLESYRN 122 Query: 78 EHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRW 137 L A++ + ++SVD +S++ + N A+ +L QK + ++ + Sbjct: 123 ISSELDAIINSTHNMIVSVDKQSRIRVFNRAAEKLLKQKAENVKGKLIDDVYPTSRLTNI 182 Query: 138 LESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVA- 196 ++S ++ + +++N F+ +P+ E + GAV +L+ + + + Sbjct: 183 IKSGQVETL-QKIMLNNHYFISNRSPIIKDGE-----IIGAVGVLQDISELEELSRELKY 236 Query: 197 -AQDVSAFSQIVAVS 210 + I+ S Sbjct: 237 VKELNEELDAIIESS 251 >UniRef50_B8FD14 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfobacteraceae RepID=B8FD14_DESAA Length = 470 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 134/469 (28%), Positives = 225/469 (47%), Gaps = 25/469 (5%) Query: 66 DVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTA 125 D + + E++ A+ +++ L D K + N G + Sbjct: 2 DDKDLRIEALEKDLEMHRAIFDSIFNGALVTDEKGIITHFNKPYGDFLGVDPESQIGRHC 61 Query: 126 AQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPV-------------YLQDENDQ 172 + + + + + H +I G+ +++ P+ +D D Sbjct: 62 TESVVNSRMHIVARTGKPEINQSHNII-GKKMVVQRIPIKRGGRVIAVFGQVLFKDVKDL 120 Query: 173 HVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLI 232 L + +L S +++ + I+ VS +K + E+A + A P+LI Sbjct: 121 SRLASELKVLESKVKLYEAELLNLRSTRYTLNSIIGVSGPIKELKEEALRAAATHYPVLI 180 Query: 233 TGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKK 284 G++GTGK+LFA A H AS R P++ +NCA+IP+D +E+ELFG+ GK Sbjct: 181 CGESGTGKELFAQAIHHASNRKLFPFVRINCAAIPKDLLEAELFGYEKGAFTGARSDGKP 240 Query: 285 GFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLV 344 G FE A+ G++ LDE+G++ MQ KLLR L D F RVG + + D+R+I AT ++L Sbjct: 241 GKFELAHQGTLFLDEVGDLPLEMQPKLLRALEDREFERVGGNKIIRSDLRIIAATNQDLD 300 Query: 345 ELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLN 404 +++ G FR+DL+YRLNV+ +N+PPLR DI+P E + + A E +P + Sbjct: 301 QMMADGRFRKDLFYRLNVIPINIPPLRKRKNDIIPSAEYILRQLAAEANLPDISMDKSAQ 360 Query: 405 TVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEI 464 L + WPGNVR+L N + R L+ L+G + D LP Y + SL + Sbjct: 361 AALRNHQWPGNVRELSNVLERTLSALNGRTIGLSD--LPFYLHQDRKPLSNGGSSSLKAV 418 Query: 465 TSRFERS-VLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKKNE 512 +R ER + + L + + K A+ LG+ T + K+++Y + +K Sbjct: 419 QARIERESICSALEQTGYNKVKAAELLGIHRTLLYKKIKKYAIPLEKEP 467 >UniRef50_Q2RHS4 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=Q2RHS4_MOOTA Length = 748 Score = 478 bits (1230), Expect = e-133, Method: Composition-based stats. Identities = 127/362 (35%), Positives = 193/362 (53%), Gaps = 14/362 (3%) Query: 160 EITPVYLQDENDQHVLTGAVVML-RSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVE 218 + VY ++ L + L +S + ++L+ + F Q+V S M+ V Sbjct: 386 KAVAVYHGLAENRMCLPYFIAQLEKSNFHLRQELKAFQGK----FGQLVGNSAAMQEVYR 441 Query: 219 QAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH 278 +K+A A +LI G++GTGK+L A A H S R+ P++++NCA++PE +ESELFGH Sbjct: 442 LIEKVAKTDATVLIRGESGTGKELVARAIHYHSRRSEAPFVSINCAALPETLLESELFGH 501 Query: 279 APEG-------KKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHV 331 A KKG FE+AN G++ LDEIG++S +Q+KLLR L +G F RVGE V Sbjct: 502 ARGAFTGAVTAKKGLFEEANEGTIFLDEIGDISLGLQSKLLRVLQEGEFLRVGETRPTRV 561 Query: 332 DVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADE 391 +VRV+ AT ++L + V+ G FR +L YRLNV+T+ LPPLR+ DI L F+ + Sbjct: 562 NVRVLAATNRDLEKAVKDGAFRPELLYRLNVITIWLPPLRERRDDIPLLARHFLEKSCQR 621 Query: 392 QGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVA 451 G + L R WPGNVR+L+N I RA+ + + D+ + A A Sbjct: 622 LGKEVNGFTHEAMDALIRADWPGNVRELENVIERAVILTESKRIELGDLPRQFRNMAAGA 681 Query: 452 VGEDAMEG-SLDEITSRFE-RSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQK 509 G G S E + +E R +L L + + A+ LG+ + + ++ Y L + Sbjct: 682 SGWAFTRGMSFKEAVAAYESRLILQALEESQGVQARAAEILGLKRSTLNEMIKRYNLMGR 741 Query: 510 KN 511 KN Sbjct: 742 KN 743 >UniRef50_B6FY43 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FY43_9CLOT Length = 590 Score = 477 bits (1228), Expect = e-133, Method: Composition-based stats. Identities = 136/514 (26%), Positives = 238/514 (46%), Gaps = 28/514 (5%) Query: 17 LLDLLVLRGIDL-RGIEIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVP---W 72 + D++ + + + +G+ ID + + E ++ + +I G+ + + Sbjct: 82 IKDIMKKKVVSVEKGMPIDECRDLMIK----ENIGILPVVDDNGKITGILRQEHIRDYLY 137 Query: 73 MPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGF 132 M E + L ++ + E + +V+ + V + N + +G K D + + + Sbjct: 138 MQLEEYGITLKYIIGHIREGICAVNNEGVVILWNSFMEERYGIKSDDIVGRPISDFLEDT 197 Query: 133 NFLRWLESEPQDSHNEHVVINGQNF-LMEITPVYLQDENDQHVLTGAVVM--------LR 183 R L S + L+ P++ E V T V L Sbjct: 198 ICERVLRRRIGISDVYSTYKKQDMYGLVHANPIFFGGEFVGVVCTELDVTEARNLSFELE 257 Query: 184 STIRMGRQLQNVAAQDVSA-FSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDL 242 T + LQ+ + F I+ S K++ A+++A S+ + I G++GTGK++ Sbjct: 258 KTNEKLKYLQDEVKNLSNGVFEGILGKSDKIEKAKAIAKQIAKTSSSIFIWGESGTGKEV 317 Query: 243 FAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGS 294 F+ A H+ S R ++ +NC++IP + ESE FG+ +GK G FE A G+ Sbjct: 318 FSRAIHEQSGRK-GSFVPVNCSAIPAELFESEFFGYESGAFTGANKKGKSGIFELAKDGT 376 Query: 295 VLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFRE 354 V LDEI ++ MQAKLLR L + RRVG + + ++ R+I AT K+L ++V++ FRE Sbjct: 377 VFLDEIADLPLNMQAKLLRVLQEKEVRRVGGEKTIKINPRIISATNKDLEKMVKEEKFRE 436 Query: 355 DLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPG 414 DLYYRLNV+ + +PPLR+ +DI L F+ E G PR L+ + +L Y W G Sbjct: 437 DLYYRLNVVEIKIPPLRERKEDIGILLHYFLDEMCRENGKPRMSLSKEAYKILENYRWKG 496 Query: 415 NVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFE-RSVL 473 N+R+LKN + + D + I ++A + ++ L + E +++ Sbjct: 497 NIRELKNTVENMVVLSDSSIIEKDAIPSYIVESAKNSTDDEDYPLDLTSAIEKLEIKNIT 556 Query: 474 TQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 L + + K AK L + T + KL YG+ Sbjct: 557 KALEMSKGNKAKAAKILNIPRTTLYYKLDLYGIK 590 >UniRef50_A6TL20 Sigma54 specific transcriptional regulator, Fis family n=4 Tax=Clostridiaceae RepID=A6TL20_ALKMQ Length = 587 Score = 477 bits (1228), Expect = e-133, Method: Composition-based stats. Identities = 135/476 (28%), Positives = 229/476 (48%), Gaps = 31/476 (6%) Query: 60 RIAGVTDVRTVP---WMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQK 116 + G+ + + + + H AL ++ L E V VD V + + + +L+ K Sbjct: 114 EVIGIVRTKDILDKVYSKIDEMHEALGHIIHNLHEGVCVVDKDGIVMLWSDTAEKLYRVK 173 Query: 117 LDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDE------- 169 L L L+SE + H + ++ P+Y+ E Sbjct: 174 SKELLGKKLESFFPTALLLTVLKSEKPIRNVYHSPRDKSYAIISAVPIYINGELVAAVST 233 Query: 170 ----NDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAM 225 + L+ + + + + N ++ +F +++ S +K +++A+++A Sbjct: 234 DRDITETANLSVELETTKEKLDYLQMEVNKINENQYSFDKVLGKSQVIKEKIDKAKQVAS 293 Query: 226 LSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA------ 279 ++ +LI G++GTGK++FA A HQ S R P++A+NC++IPE+ ESE+FG+ Sbjct: 294 TNSSVLIGGESGTGKEVFARAIHQVSGRK-GPFVAINCSAIPENLFESEIFGYEGGAFTG 352 Query: 280 --PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVIC 337 +GK G E A G++ LDEIG+M MQAKLLR L + RVG + V VDVR+I Sbjct: 353 ALNKGKIGKVELAENGTLFLDEIGDMPLYMQAKLLRVLQEKQIVRVGGEKPVDVDVRIIS 412 Query: 338 ATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRP 397 AT +NL +V +G FREDL+YRLNV+ + LP L+ +DI F+A F E + P Sbjct: 413 ATHRNLKTMVMEGKFREDLFYRLNVVNIQLPSLKYRVEDIHIFLNQFMAEFCKENNLSIP 472 Query: 398 KLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYEL----RPQDILLPDYDAATVAVG 453 K++ ++ L Y WPGN+R+LKN + + E+ P+ IL D+ V Sbjct: 473 KISMEVFHTLMNYDWPGNIRELKNTVEHLVVFSKNGEIIMSSIPEHILEKIGDSQYVDTP 532 Query: 454 EDAMEGSLDEITSRFERSVLTQLYR-NYPSTRKLAKRLGVSHTAIANKLREYGLSQ 508 E+ L E E + + + + AK L + + + K++ Y + + Sbjct: 533 EN---YDLQENIKHIETVTIRKAMEVVNGNKMQAAKLLNIPRSTLYYKIKFYNIKE 585 >UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B8FJT8_DESAA Length = 464 Score = 477 bits (1228), Expect = e-133, Method: Composition-based stats. Identities = 122/357 (34%), Positives = 189/357 (52%), Gaps = 14/357 (3%) Query: 165 YLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQ--DVSAFSQIVAVSPKMKHVVEQAQK 222 Y+ L +V R+ R+ + Q F V SP+++ V E +K Sbjct: 105 YITKPVKFDELLHSVSTAIKFKRLERENTILKKQLKKKYRFENFVGDSPQIQRVFELIEK 164 Query: 223 LAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH---- 278 +A + +LITG++GTGK+L A A H SPR P + +NC +IPE+ +ESELFGH Sbjct: 165 VADTDSTVLITGESGTGKELIARAIHYNSPRRDDPMVIINCGAIPEELLESELFGHEKGA 224 Query: 279 ---APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRV 335 A + + G FE ANGG++ LDEIG+MSP +Q KLLR + + F R+G +HVD+R+ Sbjct: 225 FTGAHKTRIGRFEVANGGTIFLDEIGDMSPNLQVKLLRVIQEQAFERIGSTRTMHVDIRI 284 Query: 336 ICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVP 395 + AT K+L+E V+K FREDLYYRLNV+ + +PPLRD DI L + F+ + A E+ P Sbjct: 285 LAATNKDLMEAVEKKEFREDLYYRLNVIPIEVPPLRDRKSDIPLLIDFFINKLAAEKERP 344 Query: 396 RPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLP----DYDAATVA 451 +++ L + WPGNVR+L+N + R L G + +D+ D Sbjct: 345 VKRISQAAMNALMGHHWPGNVRELENVVERVLILSSGDTIDKEDLPATILGLDSKEPEAG 404 Query: 452 VGEDAMEGSLDEITSRFERSVL-TQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 + + D +E++++ L + AK L ++ T + K++ + Sbjct: 405 LKLPSGGIRFDHAVEEYEKNLIVQALEEANWVKTQAAKLLHINRTTLVEKMKRKNIR 461 >UniRef50_Q2LQP1 Transcrption factor sigma 54 type n=4 Tax=Deltaproteobacteria RepID=Q2LQP1_SYNAS Length = 555 Score = 477 bits (1228), Expect = e-133, Method: Composition-based stats. Identities = 135/452 (29%), Positives = 220/452 (48%), Gaps = 29/452 (6%) Query: 78 EHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRW 137 + +L+ E + +D K KV M +PA+ + FG + + +QL G + + Sbjct: 103 NEEMVRMVLDNPYEGLSVIDTKGKVTMFSPANEKWFGLESGGGMGLSLSQLAPGTHLTKV 162 Query: 138 LESEPQDSHNEHVVINGQNFLMEITP-------------VYLQDENDQHVLTGAVVMLRS 184 + V ++G+ + P + Q L V + Sbjct: 163 ARTG--VGERAVVDLHGETKITINLPVRKDNRVIGAFGRILFQSPEQLEKLADRVRAMER 220 Query: 185 TIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFA 244 + L + + +F I+ +P M+ ++EQA+++A SA +LI G++GTGK+LFA Sbjct: 221 KVERYETLLDEMRRHRFSFENILTQNPDMQRIIEQARRIAASSATVLILGESGTGKELFA 280 Query: 245 YACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVL 296 A H+AS R P++A+NC +IP +ESELFG+ +GK G FE A G++ Sbjct: 281 QALHEASHRRKGPFVAINCGAIPHTLIESELFGYEEGAFSGASKKGKPGKFELACDGTLF 340 Query: 297 LDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDL 356 LDEIGE+ QAKLLR L + R+G + VD R++ AT ++L L G FR DL Sbjct: 341 LDEIGELPIDSQAKLLRVLEERKIDRLGGTAPIAVDFRLVVATNRDLTALANSGKFRSDL 400 Query: 357 YYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNV 416 +YR+N + +PPLR DI L E F+ + ++G+ PK + + VL Y WPGNV Sbjct: 401 FYRINEFPIEIPPLRQRLDDIPLLAEHFLTKACQQEGLAMPKFSEEAIKVLMSYEWPGNV 460 Query: 417 RQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQL 476 R+L++ I + + G + ++ + V M G+L+E +R ER+ + Sbjct: 461 RELRSLIRQMAWKFQGMTVELHNLPQAFHKERKVT-----MSGTLEEQLARAERNAIETA 515 Query: 477 YRNYPSTRK-LAKRLGVSHTAIANKLREYGLS 507 + R A+ LG+ TA+ K+ G+ Sbjct: 516 LQTSNGNRALAARMLGIHRTALYKKMNRLGVD 547 >UniRef50_Q8R5U6 NtrC family Transcriptional regulator, ATPase domain protein n=4 Tax=Clostridia RepID=Q8R5U6_THETN Length = 592 Score = 476 bits (1227), Expect = e-133, Method: Composition-based stats. Identities = 132/491 (26%), Positives = 229/491 (46%), Gaps = 31/491 (6%) Query: 26 IDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSAL 85 I + G+ I ++F + E F + + + E L L Sbjct: 119 IGILGMSIFDKNTK-IDFLNKQ-EDFKNFEKRFSELITTKINEKKLGVMIEYRSSELMTL 176 Query: 86 LEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDS 145 + ++ E ++ +D +++V N + + L+ LE + + Sbjct: 177 INSINEGIIILDSQNRVVTVNKYLKEKLNVSEK----TPVKSIFP-VKLLQELEKKDFEG 231 Query: 146 HNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAA-QDVSAFS 204 V I G F++ +P+ ++ + G V++ +M + + ++ F Sbjct: 232 EVGPVEIKGIKFVINSSPIAVKGQR-----VGTVLVFSDFSKMQESVYKASKMSEIVTFD 286 Query: 205 QIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCA 264 IV S +K+ QA ++A P+L+ G++GTGK+LFA A H S R + ++ +NC Sbjct: 287 DIVGESDAIKYAKSQAIQIADSEVPVLLLGESGTGKELFARAIHFQSSRKNEIFMPINCG 346 Query: 265 SIPEDAVESELFGHAPE--------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLN 316 +IPE +ESELFG+ GK G FE A G++ LDEIG++ MQ KLLR L Sbjct: 347 AIPETLIESELFGYEKGSFTGANVTGKIGKFELAKDGTIFLDEIGDLPLSMQVKLLRALE 406 Query: 317 DGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQD 376 + R+G + V+ R+I AT K+L ++V +G FREDL+YRLNV+ + +PPLR+ D Sbjct: 407 EKEIVRIGGYTPIKVNPRIISATHKDLYQMVLEGKFREDLFYRLNVVPIVIPPLRERGYD 466 Query: 377 IMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELR 436 I+ L F+ +F G + + +L Y +PGN+R+L+N I A+ + Sbjct: 467 IIILANYFLEKFNKIYGKNIKGFSKESEKLLLSYPFPGNIRELRNLIEYAVNFESKDYIS 526 Query: 437 PQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYP----STRKLAKRLGV 492 P+ I + +L E+ +E++V+ + Y S + +AK+LG+ Sbjct: 527 PETI------NQRLHRKTLEEGKTLAEMVKNYEKNVIKEYMLRYGSDVESKKLIAKKLGI 580 Query: 493 SHTAIANKLRE 503 S + K+ E Sbjct: 581 SIATLYRKMAE 591 >UniRef50_A8S4D9 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S4D9_9CLOT Length = 645 Score = 476 bits (1227), Expect = e-133, Method: Composition-based stats. Identities = 139/491 (28%), Positives = 240/491 (48%), Gaps = 30/491 (6%) Query: 34 DPIGRIYLNFAELEFES-FSSLMAEIRRIAGVTDVRTVPWMPSEREHLAL-SALLEALPE 91 + + R++++ ++ E M R I ER + S +L + Sbjct: 172 EALNRVHIHTKDIAIEQALKQAMDAARTIN------------MERARSKMTSTILNTSSD 219 Query: 92 PVLSVDMKSKVDMANPASCQLFGQKLD-RLRNHTAAQLINGFNFLRWLESEPQDSHNEHV 150 +++V + N + + F ++ + +E+ + E + Sbjct: 220 ALIAVSGSGLIQALNNQAYRTFQLSSQADYTGRPVEEVCPALKWKDVVETGRERE--EVI 277 Query: 151 VINGQNFLMEITPVYLQDENDQHVLTG--AVVMLRSTIRMGRQLQNVAAQDVSAFSQIVA 208 + E PV + ++ ++ + ++ + L +F I+ Sbjct: 278 QWKDRKLYTEYRPVLVDKMGKGAIIVARYTEQIIEAETKIRQSLAKQGLTAKYSFDDIIG 337 Query: 209 VSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPE 268 SP ++ + A++ + + + +LI G+TGTGK+LFA++ H+ S R+ +P++ALNCA++PE Sbjct: 338 SSPAIRENILMAKRYSRVDSNVLIVGETGTGKELFAHSIHRESRRSAEPFVALNCAALPE 397 Query: 269 DAVESELFGHAPE--------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTF 320 + +ESELFG+ P GK G FE A+ G++ LDEIGE+ +QAKLLR L + Sbjct: 398 NLLESELFGYEPGAFSGASKNGKTGLFELAHKGTIFLDEIGEIPISLQAKLLRVLQEREI 457 Query: 321 RRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPL 380 RR+G + VDVRVI AT N+ E +Q+G FR DLYYRLN+L + +PPLR+ DI + Sbjct: 458 RRIGSNRVQPVDVRVISATNINIEEKIQEGQFRADLYYRLNLLDITIPPLRERGDDIREM 517 Query: 381 TELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDI 440 + ++ RFA E G P P+L+ + ++T Y WPGNVR+L+N R + D E+ ++I Sbjct: 518 VDFYLTRFACEMGKPIPRLSKEAVDLMTHYGWPGNVRELRNICERLIVLSDTTEIGLREI 577 Query: 441 LLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANK 500 + G + D+ T + E ++ + + +AK LGVS T + Sbjct: 578 QM--LKIFRKKEGPLPGTQTPDKETDQPETGIVYANLKPRKKKQDIAKELGVSRTTLWR- 634 Query: 501 LREYGLSQKKN 511 + + QKK Sbjct: 635 MEKMAREQKKQ 645 >UniRef50_C9XRJ3 Sigma-54-dependent transcriptional activator n=5 Tax=Clostridium difficile RepID=C9XRJ3_CLODC Length = 596 Score = 476 bits (1226), Expect = e-133, Method: Composition-based stats. Identities = 125/473 (26%), Positives = 224/473 (47%), Gaps = 23/473 (4%) Query: 60 RIAGVTDVRTVP---WMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQK 116 +I GV + +M E L L ++ + E + +++ + V + N + + K Sbjct: 124 KIIGVLKQEHIRDYLYMHLEDYGLTLKYIIGQIKEGICAINNEGVVILWNKFMEERYDIK 183 Query: 117 LDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNF-LMEITPVYLQDENDQHVL 175 + + + + + L S+ S + L+ P++ ++E V Sbjct: 184 SEDIVGRPMNEFLENTISEKVLNSKVGMSDLYFTDKKENMYALVHANPIFYKEEFIGVVC 243 Query: 176 TG---------AVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAML 226 T A+ + + + V +F +I+ S K++ A+++A Sbjct: 244 TEVDVTEAKILALELEKVNDTLKYLKNEVKNLSKGSFDKILGKSYKLEKSKAIAKQVART 303 Query: 227 SAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA------- 279 ++ + I G++GTGK++FA A H S R G+ ++ +NC++IP + ESE FG+ Sbjct: 304 NSSIFIWGESGTGKEVFARAIHDYSERKGQ-FIPVNCSAIPNELFESEFFGYESGAFTGA 362 Query: 280 -PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICA 338 +G+ G FE A G+V LDEI ++ MQAKLLR L + RRVG D + ++ R+I A Sbjct: 363 SKKGRIGIFELAKDGTVFLDEIADLPLSMQAKLLRVLQEKEIRRVGGDTTIKINPRIISA 422 Query: 339 TQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPK 398 T K+L ++V+ FREDLYYRLNV+ + +PPLR+ +DI L F+ + P Sbjct: 423 TNKDLSKMVKAEKFREDLYYRLNVVEIKIPPLRERKEDIGLLVHSFLEEICKQNNKPVLT 482 Query: 399 LAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAME 458 ++ D+ + Y W GN+R+LKN I + ++ D+ D+ + E+ Sbjct: 483 ISKDVIDIFQNYRWKGNIRELKNTIENIVVLSQNSKIDVDDVPSYMMDSTNNSTEEEEYP 542 Query: 459 GSLDEITSRFE-RSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKK 510 L + T + E +++ L + + K AK L + T + K+ +Y + K Sbjct: 543 LDLTKATQKIEIKNITKALKMSNGNKAKAAKILNIPRTTLYYKIDQYKIDVSK 595 >UniRef50_A6TWZ7 Sigma54 specific transcriptional regulator, Fis family n=24 Tax=Clostridiaceae RepID=A6TWZ7_ALKMQ Length = 645 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 126/440 (28%), Positives = 217/440 (49%), Gaps = 22/440 (5%) Query: 81 ALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLES 140 ++ +++++ + +V K + N + + D + +LI G+ ++ Sbjct: 196 SIETIVDSIDAGIFTVGPKGYMKTINQVASHMLQYTNDEILGMEGIKLIEGWAGVQESVE 255 Query: 141 EPQDSHNEHVVINGQ----NFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQN-V 195 E I + + + P+ + +N L G V M+R +M R + + Sbjct: 256 SNISYVEEEAYIKTKKGKIHCTLSAYPILDESKN----LQGIVCMIREIKKMRRLVNKMI 311 Query: 196 AAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAG 255 Q + F +I+ +V A+K++ + +LI G++GTGK++FA + H S R Sbjct: 312 GKQALYTFDKIIGRDENFIRMVNYAKKISDSPSTVLIMGESGTGKEVFAQSIHNHSERRD 371 Query: 256 KPYLALNCASIPEDAVESELFGHAPE--------GKKGFFEQANGGSVLLDEIGEMSPRM 307 +P++A+NC ++P + +ESELFG+ G G FE A+GG++ LDEIGEM M Sbjct: 372 EPFVAINCGALPRNLIESELFGYEDGAFTGAKRGGHPGKFELADGGTLFLDEIGEMPLDM 431 Query: 308 QAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNL 367 QA LLR L +G RVG + E+ VDVR+I AT K+L + V++ FR DLYYRLNVL L L Sbjct: 432 QANLLRVLEEGKLFRVGGNKEIAVDVRIIAATNKDLRDEVERNNFRGDLYYRLNVLPLIL 491 Query: 368 PPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRAL 427 PPLR+ DI L + F+ A + L D+ + Y W GN+R+L+N I + Sbjct: 492 PPLRERKSDIPLLIDYFMTIKALKLKKSMTYLPRDIMDQMINYTWRGNIRELENVIENLM 551 Query: 428 TQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLA 487 + L ++ +++ ++ L+++ R VLT+ + + A Sbjct: 552 NSGELNFLERVELSSTSNESSPRVYSLESE--PLEDMEKRHIHQVLTKYE---GNVSQAA 606 Query: 488 KRLGVSHTAIANKLREYGLS 507 + LG+ + K+ +Y + Sbjct: 607 EALGIGRNTLYRKMAKYKID 626 >UniRef50_B3E653 PAS modulated sigma54 specific transcriptional regulator, Fis family n=7 Tax=Desulfuromonadales RepID=B3E653_GEOLS Length = 463 Score = 475 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 139/455 (30%), Positives = 225/455 (49%), Gaps = 40/455 (8%) Query: 83 SALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQL--INGFNFLRWLES 140 +LE++ E ++ D ++ N + ++ G K + T + N ++ L Sbjct: 9 RDILESMAEGIIFADADDRLTFINQTAEEIRGIKAENFIGRTIFSVHSPNSAKRIKELLQ 68 Query: 141 EPQDSHNEH----VVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQN-- 194 + +D + + + G+ F PV D G +++ R +QLQ+ Sbjct: 69 KLRDGSIKQARRVIEVKGRYFENSYYPVSSPDGG----YLGTLLISRDVTE-RQQLQHEN 123 Query: 195 ---VAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQAS 251 +F V++S M V + +A L + +LITG++GTGK+L A A H+ S Sbjct: 124 QSLKQRMACGSFGGFVSISSSMLPVFQTIGAVAGLESTVLITGESGTGKELVAAAIHRNS 183 Query: 252 PRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMS 304 R + + +NCA++PE VESELFG+ A +G FEQA+ ++ LDE+G++ Sbjct: 184 ARNERAMVTVNCAALPEHLVESELFGYQRGAFTGAVGNHRGKFEQADKSTIFLDEVGDLP 243 Query: 305 PRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLT 364 QAKLLR L + T R+G + ++ VDVR+I AT +NL ++V G+FREDLYYRLNV++ Sbjct: 244 ANAQAKLLRVLQERTVSRLGSEKDIRVDVRIIAATNRNLQQMVADGLFREDLYYRLNVIS 303 Query: 365 LNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIY 424 L +PPLR+ +DI+P+ E F+ RF++ P+ + +VL Y +PGNVR+L++ I Sbjct: 304 LPVPPLRERREDILPMAEFFLKRFSERMERPQLGICEATRSVLLSYDYPGNVRELEHGIE 363 Query: 425 RALTQLDGYELRPQDIL----------------LPDYDAATVAVGEDAMEGSLDEITSRF 468 RA+ G + P D+ A +DA +L Sbjct: 364 RAVALCPGSCISPADLPEQFVAARSSGGPDWQHPLSVRAGDQYRPDDAAPATLANAREES 423 Query: 469 ERS-VLTQLYRNYPSTRKLAKRLGVSHTAIANKLR 502 ER +L L R + AK L +S + KL+ Sbjct: 424 ERRLILDALVRTGGRKAEAAKLLNISRKTLWEKLK 458 >UniRef50_C0Z9N5 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z9N5_BREBN Length = 584 Score = 475 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 140/475 (29%), Positives = 232/475 (48%), Gaps = 29/475 (6%) Query: 49 ESFSSLMAEIRRIAG--VTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMAN 106 E + ++ E+ + V T S+ L L+ + + + D V N Sbjct: 122 ERYQQILTEVSEMITAIVQSHATRQTESSDDSMRLLEGALDTVADAYFTFDRSGNVIHTN 181 Query: 107 PASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYL 166 ++ +L Q D L + L+ + L + +++ + E TP+ + Sbjct: 182 ASARRLLSQH-DLLPAEVSRMLLPSLSGL-----TAHSLPIANCLVDKLDAPTEATPIIV 235 Query: 167 QDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQ---DVSAFSQIVAVSPKMKHVVEQAQKL 223 ++ ++ G + + R ++ + R + + ++ + +QIV SP +K V E A K+ Sbjct: 236 NNQ----LIGGVLRVQRGSLTVPRLMDHQGSRSPGKADSLAQIVGNSPAIKQVKEMAMKI 291 Query: 224 AMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA---- 279 ++ +LITG+TGTGK A A H+AS RA P++A+NCASIPE+ ESELFG+ Sbjct: 292 GNSNSTVLITGETGTGKGHLAKAIHEASTRAYSPFVAINCASIPENLFESELFGYEDGAF 351 Query: 280 ----PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRV 335 GK G FE A GG++ LDEIG+M +QAKLLR L + R+G + VR+ Sbjct: 352 TGAKKGGKPGRFEMAEGGTLFLDEIGDMPLSLQAKLLRVLQEKVVERIGGTRSFPIHVRI 411 Query: 336 ICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVP 395 I AT +NL ELV+K FR DLYYRLNV+ +++P L + +DI L F+ ++ ++ G Sbjct: 412 IAATNQNLEELVEKKAFRADLYYRLNVIPIHVPSLAERKEDIELLAVSFMEKYGEQAGRT 471 Query: 396 RPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGED 455 +A + +LT Y WPGNVR+L+NAI A+ L LP A V Sbjct: 472 FFGIAREAINLLTHYHWPGNVRELENAIEYAMNMEQDTVLTADS--LPPRLRARPLVAPS 529 Query: 456 AMEGSLDEITSRFERSVLTQLYRNYP----STRKLAKRLGVSHTAIANKLREYGL 506 ++ + + + + + +++A+ LG+ + KL+ G+ Sbjct: 530 HSGPAIKVRVADAQADAIRASLQKHGSDLKGKQRVAEELGIGLRTLYRKLKLLGI 584 >UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3 Tax=Bacteria RepID=Q3ABV5_CARHZ Length = 732 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 120/358 (33%), Positives = 187/358 (52%), Gaps = 12/358 (3%) Query: 160 EITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQ 219 + VY L + R R + + I + K+ V + Sbjct: 376 KAIAVYQGLAEIDMCLPFLLKKTRGEAEFYRNKYEMENRKKYYLDGITGQTEKIIEVKKL 435 Query: 220 AQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA 279 +K AM +LI G++G GK++ A H S RA KP++A+NCA+IPE+ +ESELFG+ Sbjct: 436 IEKAAMSDGNVLIQGESGVGKEIAARTIHYLSERADKPFVAINCAAIPENLLESELFGYE 495 Query: 280 PE--------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHV 331 GK G EQA+GG++ LDEIG+M MQ KLLRF+ + F R+G + V Sbjct: 496 EGAFTGAKRGGKAGKIEQADGGTLFLDEIGDMPLSMQVKLLRFIQNREFERIGSNTPRKV 555 Query: 332 DVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADE 391 D+R+I AT + L +LV++G FR DLYYRLNV +N+PPLR+ DI L F+ F + Sbjct: 556 DIRIIAATNQPLAKLVKEGRFRMDLYYRLNVFNINIPPLRERRDDIPLLVNRFMNEFCER 615 Query: 392 QGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVA 451 + + + ++ +L Y+WPGN+R+L+N I RA +G ++P+ LP + Sbjct: 616 RKMAPKIVTSEAMNILMNYSWPGNIRELQNVIERAYYLAEGNLIKPEH--LPAQLTSKAL 673 Query: 452 VGEDAME-GSLDEITSRFERSVLTQ-LYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 GE + + E + E+ ++ + L + AK LG+ + K++EYG+ Sbjct: 674 SGERITKITTFKEAVAEVEKKLIIEGLKATNYNKLACAKLLGIPRATLYQKIKEYGIE 731 >UniRef50_Q6AL05 Related to transcription activator Stc n=1 Tax=Desulfotalea psychrophila RepID=Q6AL05_DESPS Length = 657 Score = 474 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 131/486 (26%), Positives = 241/486 (49%), Gaps = 24/486 (4%) Query: 38 RIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVD 97 ++++ L ++ ++ + ++ + ++ ++ ++A++E+ +++VD Sbjct: 181 NMHVHTIGLVSQASKNIRSRLQSLEKQQEIAI--------KNQYMTAIIESKSSGIVTVD 232 Query: 98 MKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHV-VINGQN 156 + + N + L K D N + N N LE E V G + Sbjct: 233 QQGNIVQTNHKARNLLAIKADARDNLLTTYIGNSLNIADCLERGRGFRAREIVSKKTGVS 292 Query: 157 FLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHV 216 + + P+ L++E ++ G + + R ++ + Q F I+ SP +K Sbjct: 293 YFASLDPIRLEEE---QLVGGIFTFVEKNEALRRAVKLIGTQAPFTFDSILGDSPALKSA 349 Query: 217 VEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELF 276 + A+ A +A +L+ G+TGTGK+LFA A H AS ++A+NC +IP++ +ESELF Sbjct: 350 LHLARISAKNTASVLLYGETGTGKELFAQAIHNASEHKNGSFVAINCGAIPKELLESELF 409 Query: 277 GHA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHE 328 G+ G+ G E AN G++ LDEIG+M MQ KLLR L G +RVG Sbjct: 410 GYEEGAFTGAQKGGRPGKIELANNGTLFLDEIGDMPFEMQVKLLRVLQFGEIQRVGGLRT 469 Query: 329 VHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARF 388 + V++R+I AT K+L +++ FR DLYYR++ L +N+PPLR+ DI+ L + F+ R Sbjct: 470 IPVNLRIISATHKDLKKMIDVQQFRADLYYRISTLRINIPPLRERQGDILKLVQYFIDRH 529 Query: 389 ADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAA 448 + + L + +++Y+WPGN+RQL++A RA+ + L P+ + D + Sbjct: 530 IIKFDRRKQVLPSQTRLAISKYSWPGNIRQLESATERAIYLAEDGVLLPEHFAISDLFSN 589 Query: 449 TVAVGEDAMEGSLDEITSRFERSVLTQLYRNY-PSTRKLAKRLGVSHTAIANKLREYGLS 507 T ++ ++ + E ++T+ + + K A+ LG+S + K+ +Y + Sbjct: 590 T---NKEVVKVVGTQTLEEVESQIITETLAFFDNNISKTAQSLGISRPTLYRKIDKYRIV 646 Query: 508 QKKNEE 513 K E Sbjct: 647 LTKGHE 652 >UniRef50_B8FQM8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FQM8_DESHD Length = 694 Score = 474 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 133/439 (30%), Positives = 221/439 (50%), Gaps = 20/439 (4%) Query: 81 ALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLES 140 L LE + E ++++D ++ N ++F + + + + ++ + + L + Sbjct: 259 TLETTLEVMDEGIITLDPSGRIINMNREVTRIFKIRPEEKSHKNINEFLHTHSQVAALIT 318 Query: 141 EPQDSHNEHVVING---QNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAA 197 + E ++ G Q +++ I PV + + AV+ L ++ Q N Sbjct: 319 AGKSVDIEENLVIGNDEQPYIINIRPVLNKKT---QQIEAAVLRLNHVDKVNAQAANRTG 375 Query: 198 Q-DVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGK 256 +F IV S ++K V A++ A S +L+ G++GTGK+LFA A H S Sbjct: 376 SIATYSFECIVGESEEIKKAVSIARRFATSSENVLLMGESGTGKELFAQAIHNHSC-PLG 434 Query: 257 PYLALNCASIPEDAVESELFGHAPE--------GKKGFFEQANGGSVLLDEIGEMSPRMQ 308 P++A+NCA++P + +ESELFG+ G+ G E A+GG++ LDEIG+M +Q Sbjct: 435 PFMAVNCAAMPRELIESELFGYEGGSFTGAERTGRPGKIELAHGGTLFLDEIGDMPLELQ 494 Query: 309 AKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLP 368 A LLR L D R+G VD R+I AT KNL ++V++ +REDLY+RL+VLT+ +P Sbjct: 495 AVLLRALEDKQIMRIGGRRYKKVDFRLIAATNKNLFKMVKERQYREDLYFRLSVLTITIP 554 Query: 369 PLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALT 428 LR+ DI L++ F+ + +QG PK+ + Y WPGNVRQL+NA+ A+ Sbjct: 555 SLRNRKNDIDVLSQYFIKNYCQKQGWKTPKITKGALRKIQEYEWPGNVRQLQNALIYAVN 614 Query: 429 QLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEI-TSRFERSVLT-QLYRNYPSTRKL 486 + LP Y + +D + D + E++ + L S Sbjct: 615 SAHNDVIDTDS--LPQYILLDSSPFQDEPNFTTDSLSLEHLEKNAIKTALLHAKNSIPDA 672 Query: 487 AKRLGVSHTAIANKLREYG 505 AK LG+S + + KL++YG Sbjct: 673 AKLLGISRSTLYRKLKDYG 691 >UniRef50_A1AME4 GAF modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfuromonadales RepID=A1AME4_PELPD Length = 661 Score = 474 bits (1221), Expect = e-132, Method: Composition-based stats. Identities = 135/440 (30%), Positives = 218/440 (49%), Gaps = 16/440 (3%) Query: 83 SALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEP 142 LLE++ + ++SV+ + N + ++FG + ++ + L + Sbjct: 226 QTLLESISDGIVSVNNSGIIAEMNSSGGKIFGINHQAAKGKHINTVMRQQAPILSLLATG 285 Query: 143 QDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIR-MGRQLQNVAAQDVS 201 + + +++ Q + + L D D GAV +LR + + ++ Sbjct: 286 EGYRDREILLENQGKKVFSSATLLLD--DSGNTIGAVAVLRQARDALKSRRAQHSSLPRY 343 Query: 202 AFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLAL 261 +F I+ SP + E A+ A + +L++G++GTGK+LFA + H S P++A+ Sbjct: 344 SFDDIIGESPAISEAKEWARIAANSGSTILLSGESGTGKELFAQSIHNVSSFRNGPFIAI 403 Query: 262 NCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLR 313 NCA+IPE VESELFG+A G G FE A+ G++ LDEIG+M +QAK+LR Sbjct: 404 NCAAIPEALVESELFGYAEGTFTGAKKGGSPGKFESADRGTLFLDEIGDMPLTVQAKVLR 463 Query: 314 FLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDC 373 + + RVG E V++R+I +T KNL V G FREDL+YRLNVL + +PPLRD Sbjct: 464 VIQEKKISRVGSSEERQVEIRIIASTHKNLRTEVLNGNFREDLFYRLNVLVVQVPPLRDR 523 Query: 374 PQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGY 433 DI + V + + G R L + WPGNVR+L+NAI +A+ + D Sbjct: 524 GGDIPLVACHLVEKISARMGKQRIVGEDAFWGKLASHNWPGNVRELENAIEQAVVRSDDS 583 Query: 434 ELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNY-PSTRKLAKRLGV 492 + L D + G A SL E+ E+ +T Y + +K A +LG+ Sbjct: 584 GVLLARHLTFDVVESVAPTGGRAEIVSLTEM----EKQAITAALHLYDGNIQKAASKLGI 639 Query: 493 SHTAIANKLREYGLSQKKNE 512 + K+REYG++ ++ Sbjct: 640 GRNTLYRKIREYGIAHAGSQ 659 >UniRef50_Q30XH6 Putative transcriptional regulator, Fis family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30XH6_DESDG Length = 589 Score = 474 bits (1220), Expect = e-132, Method: Composition-based stats. Identities = 135/470 (28%), Positives = 224/470 (47%), Gaps = 33/470 (7%) Query: 67 VRTVPWMPSEREHLA--LSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHT 124 V + E++ L L + A+P+ +++V V N A + G Sbjct: 123 VDQKQRLEREKDELRRHLETVFNAVPDAIVTVSSGFTVLSVNEACRNILGMDTAAAGGQP 182 Query: 125 AAQLINGFNFLRWLESEPQDSHNEHVVINGQ--------NFLMEITPVYL-------QDE 169 + + G + + H+V G +++I+ V L + Sbjct: 183 CDKAL-GSAAAECMPLLREAVRAGHIVQRGGVAVQHDRGEIIVDISAVPLACAATATEHS 241 Query: 170 NDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAP 229 G ++++R R+ + +AAQ + ++ S M+ V + LA Sbjct: 242 PGTDASGGVMLIVRDVTRLTGLERALAAQHIR--RSMIGRSSVMRGVFRLVESLADTDTT 299 Query: 230 LLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH-------APEG 282 +L+TG++GTGK+L A A H + RA P++ +NC+++ E +ESELFGH A + Sbjct: 300 VLVTGESGTGKELVADALHHSGARAQGPFVKVNCSALSETLLESELFGHVRGAFTGATKD 359 Query: 283 KKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKN 342 + G + A+GG++ LDEIG++SP +Q KLLR L + RVGE V VDVRV+ AT K+ Sbjct: 360 RTGRIQMAHGGTLFLDEIGDISPSVQLKLLRVLQEKEIERVGEGRPVKVDVRVVAATNKS 419 Query: 343 LVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAAD 402 L LV +G FREDLYYRL V+ ++LP LR+ +DI L E F+ F + L + Sbjct: 420 LRALVARGKFREDLYYRLKVVEVHLPALRERREDIPLLAEHFIEEFNEHFHRRVSGLDSS 479 Query: 403 LNTVLTRYAWPGNVRQLKNAIYRALTQLDGYEL----RPQDILLPDYDAATVAVGEDAME 458 +L +Y WPGNVR+L++A+ A G + P +++ +A A Sbjct: 480 AQQLLVQYDWPGNVRELRHAVEHAFIMAGGNVIPAAALPAELMQSGRFSAQSAGTGALRH 539 Query: 459 GSLDEIT--SRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 + D + +++ + L + K A+ LG+S + +LRE G+ Sbjct: 540 DAPDAAAQGAEWKQRLSAALKETGGNKAKAARLLGISRQTMYRRLRELGM 589 >UniRef50_B4DAQ1 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAQ1_9BACT Length = 987 Score = 473 bits (1219), Expect = e-132, Method: Composition-based stats. Identities = 137/474 (28%), Positives = 216/474 (45%), Gaps = 43/474 (9%) Query: 79 HLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFN----- 133 L + P + ++ S AN A+ ++ G K + + + Sbjct: 512 EERFRDLFDEAPIAYVHEELDSHFIRANRAAIRILGIKPEDVPHTYGKTFAPDTPDAQRR 571 Query: 134 FLRWLESEPQDSHNEHVVI------NGQNFLMEITPVYLQDENDQHV----LTGAVVMLR 183 ES + + VV+ NG+ F ++ +T V+M + Sbjct: 572 MREAFESIGRGTDTSGVVLEMRRKDNGKPFWIQWWSRPDPSGKYTRTMFLDITDRVLMEQ 631 Query: 184 STIRMGRQLQNVAA--QDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKD 241 R+ Q + + F +IV SP + V+ Q ++A + +LI G+TGTGK+ Sbjct: 632 DKARLEAQNTYLQEEIRSQHNFVEIVGNSPSLLQVLRQVDRVASTDSTVLICGETGTGKE 691 Query: 242 LFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGS 294 L A A H SPR +P + +NC +I VESELFGH A ++G FE A+GG+ Sbjct: 692 LIARAIHDRSPRRERPLVKVNCGAISTGLVESELFGHVKGAFTGAIANREGRFELADGGT 751 Query: 295 VLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFRE 354 + LDE+GE+ P Q KLLR L + F +G V VDVRVI AT ++L +V++G FR Sbjct: 752 IFLDEVGELPPETQVKLLRVLQEQEFEPIGSTKTVKVDVRVIAATNRDLETMVREGKFRS 811 Query: 355 DLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPG 414 DL+YRLNV+ L +PPLR DI LT F+ +FA + G ++A + L +Y WPG Sbjct: 812 DLFYRLNVVPLTMPPLRQRANDIPLLTMFFLEKFARKLGKSLGQIAEETMARLCQYPWPG 871 Query: 415 NVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAME---------------- 458 N+R+L+N I RA+ G L + LP E Sbjct: 872 NIRELQNVIERAVVLSTGSLLTVEKGALPGATGVMAQGPGWTPERAMIDAAEPLSTPLGA 931 Query: 459 ---GSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQK 509 +L+++ + SVL Q AK L + + + +++++ G+ + Sbjct: 932 TSGNALEDVERQHIASVLQQTNWRIEGANGAAKILNLQPSTLRSRMQKLGIVRP 985 >UniRef50_P54529 Putative sigma L-dependent transcriptional regulator yqiR n=39 Tax=Bacteria RepID=YQIR_BACSU Length = 692 Score = 473 bits (1219), Expect = e-132, Method: Composition-based stats. Identities = 144/491 (29%), Positives = 233/491 (47%), Gaps = 45/491 (9%) Query: 48 FESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANP 107 F+ + + + + VRT+ L A++++ E + VD + N Sbjct: 215 FKDITDAVELAEEVTNLKQVRTM-----------LEAIIQSSDEAISVVDENGIGLLINK 263 Query: 108 ASCQLFGQKLDRLRNHTAAQLINGFN--FLRWLESE-PQDSHNEHVVINGQNFLMEITPV 164 A ++ G + A I+ L+ LE+ P V N + ++ + PV Sbjct: 264 AYTKMTGLSEKEVIGKPANTDISEGESMHLKVLETRRPVRGVRMKVGPNEKEVIVNVAPV 323 Query: 165 YLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAA--------QDVSAFSQIVAVSPKMKHV 216 + +L G+V ++ + + + F I+ S +M Sbjct: 324 IVDG-----ILKGSVGVIHDVSEIKMLTAELNRARQIIRTLEAKYTFDDIIGKSEQMLVA 378 Query: 217 VEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELF 276 +EQA+ A A +L+ G++GTGK+LFA+A H S R ++ +NCA++ E+ +ESELF Sbjct: 379 LEQAKLGAKTPATILLRGESGTGKELFAHAIHNESDRKYNKFIRVNCAALSENLLESELF 438 Query: 277 GHAPE--------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHE 328 G+ GKKG FE+AN GS+ LDEIGE++ MQAKLLR L + RVG Sbjct: 439 GYEDGAFSGAKRGGKKGLFEEANNGSIFLDEIGELTQNMQAKLLRVLQEKEIVRVGGTKA 498 Query: 329 VHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARF 388 + V+VRVI AT N+ + + G FREDLYYR+N +++PPLR +DI L+ + + Sbjct: 499 IPVNVRVIAATNVNIEKAMADGTFREDLYYRINRYPISIPPLRQRLEDIEALSVRLIQKI 558 Query: 389 ADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDG--YELRPQDILL---- 442 + G L+ L+ Y WPGNVR+L+N + RA+ L+ + + + Sbjct: 559 NRDYGRNVKGLSQQALRALSAYHWPGNVRELENVLGRAMIFLNPHMEWIEKDHLPVFELE 618 Query: 443 ---PDYDAATVAVGEDAMEGSLDEITSRFERSVLTQ-LYRNYPSTRKLAKRLGVSHTAIA 498 D D T D L +FE ++ Q L +++ + K AK LGVS + Sbjct: 619 QKENDTDQGTGFDFPDIEGEKLSVAVEKFEAHLIQQTLEKHHFNRTKTAKALGVSIRNLY 678 Query: 499 NKLREYGLSQK 509 K+ +YGL+ + Sbjct: 679 YKMDKYGLANE 689 Score = 73.9 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 17/136 (12%), Positives = 54/136 (39%), Gaps = 6/136 (4%) Query: 85 LLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQD 144 + + + ++ +D+ ++ + N + ++ G+K + + ++I R L++ + Sbjct: 122 IFNSTHDGMIFIDINEEIILFNHMAEKMVGKKREEVIGRPIKEVIPSTKMPRILKTRVPE 181 Query: 145 SHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVA--AQDVSA 202 + + ++ + + P+ + L GA+ + + + V Q + Sbjct: 182 YNQKQLLGDHLQIVTTRLPIIDEGGR----LLGALCVFKDITDAVELAEEVTNLKQVRTM 237 Query: 203 FSQIVAVSPKMKHVVE 218 I+ S + VV+ Sbjct: 238 LEAIIQSSDEAISVVD 253 >UniRef50_C8WZA1 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WZA1_DESRD Length = 631 Score = 473 bits (1218), Expect = e-132, Method: Composition-based stats. Identities = 136/440 (30%), Positives = 207/440 (47%), Gaps = 30/440 (6%) Query: 82 LSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESE 141 L A+LE+ ++ +D + + N Q+ K L + L + + + Sbjct: 206 LDAVLESTTSGLMVIDSQGVIWRVNRKGGQIL--KKTDLAGQEVSVLQGLDLDIEDIRAN 263 Query: 142 PQDSHNEHVVINGQ----NFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAA 197 P N + + L PV D++ + G V+ + + N+A Sbjct: 264 PNAWVNRECTLKNGRQNIHILFSAQPVLAGDQS----MLGVVLEFEPIDSVRKLANNIAG 319 Query: 198 -QDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGK 256 + F ++ S + E A++ A + +L+ G+TGTGK+LFA A H AS R Sbjct: 320 TKAFFTFESMIGSSESFRRAQEMAKRAAHSDSTVLLRGETGTGKELFAQAIHNASRRRSA 379 Query: 257 PYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQ 308 P++ +NC +IP + +ESELFG+ G+ G FE A+ G++LLDEIG+M MQ Sbjct: 380 PFVPINCGAIPGELLESELFGYVDGAFTGAQKGGRPGKFELAHRGTILLDEIGDMPHDMQ 439 Query: 309 AKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLP 368 KLLR L G R+G VD R+I T +L + V G FREDLYYRLNVL + +P Sbjct: 440 VKLLRVLQTGEVYRIGARKPTLVDTRIIACTHVDLGKAVAAGRFREDLYYRLNVLPIVIP 499 Query: 369 PLRDC-PQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRAL 427 LR+ DI+ LTE F++R V P+L L + WPGNVR+L+N I RAL Sbjct: 500 ALRERGRDDILALTEFFLSR----NRVTPPQLTVGAVKALENHPWPGNVRELENTIQRAL 555 Query: 428 TQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLA 487 + E+ + +P+ A G+L+EI L + + A Sbjct: 556 HLCEENEIDAACLGVPE---TAAAASSSTPRGTLEEIERLAIEQTLED---TKGNMAETA 609 Query: 488 KRLGVSHTAIANKLREYGLS 507 K LG+S + K++ Y L Sbjct: 610 KTLGISRATLYRKVKRYSLE 629 >UniRef50_B8FKE8 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FKE8_DESAA Length = 460 Score = 473 bits (1217), Expect = e-132, Method: Composition-based stats. Identities = 134/461 (29%), Positives = 218/461 (47%), Gaps = 26/461 (5%) Query: 68 RTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQ 127 R P + L ALL E ++ VD + + + A+ ++ Sbjct: 5 RKKSAAPRKIPQDLLDALLNNPYEGLILVDAQGIIRHMSSANEGIYPFTPQESVGRHIHD 64 Query: 128 LINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPV-------------YLQDENDQHV 174 + R + + + + ++ + ++ P+ D Sbjct: 65 VSPKSRMDRTIRTGKAEIGRSMI-LDDKTRVVARFPLSKDGKVIGAAGKLLFMDPGKMKE 123 Query: 175 LTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITG 234 L + L + + + I+ SP + A++ A +P+LI G Sbjct: 124 LYERITHLERRLEKYEDELAQIYRTNYSLDSILGDSPDIIQAKRLAEQAAGADSPVLIMG 183 Query: 235 DTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGF 286 ++GTGK+LFA+A H S R + +NCA+IP + +E+ELFG+ +GK G Sbjct: 184 ESGTGKELFAHAIHGLSQRGSGALVKVNCAAIPGELLEAELFGYEEGAFTGARKKGKAGK 243 Query: 287 FEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVEL 346 FE A+GG++ LDEIG+M MQ K+LR L + RVG + VD R+ICAT ++L +L Sbjct: 244 FELAHGGTIFLDEIGDMPLPMQIKILRVLQEREVERVGSNRPKKVDFRLICATNRDLPKL 303 Query: 347 VQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTV 406 +++G+FR+DLYYR+NV+TL LPPLRDC DI PL + F E PK+ + + Sbjct: 304 MRQGLFRQDLYYRINVMTLKLPPLRDCRDDIFPLFQHFSRILGRE--KTPPKILPGVKEI 361 Query: 407 LTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITS 466 L +Y+WPGNVR+L+N RAL + P D LPD V + SL + Sbjct: 362 LEKYSWPGNVRELRNVTERALIVCRDNTVSPAD--LPDLSQQEVLPQVIEEKASLKALMD 419 Query: 467 RFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 + E+ ++ Q S + A+ LG+ T + K++++G+ Sbjct: 420 QAEKKIIEQALVQASSRAEAARNLGIHRTGLYQKMKKHGIE 460 >UniRef50_B2A7X5 Putative sigma54 specific transcriptional regulator n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A7X5_NATTJ Length = 594 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 145/467 (31%), Positives = 226/467 (48%), Gaps = 52/467 (11%) Query: 82 LSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESE 141 L +L L E V + +V N A + + + + L+ ++S Sbjct: 139 LQMVLNNLNEGVFILSSDGEVLYQNNALAGILATQSAQSTQPEIPR-----ELLQKIQSG 193 Query: 142 PQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAA---- 197 H+ N + + + + P + + ++T + + + QL + Sbjct: 194 SGGDFVYHL--NNKVYSVNVAPFPCNESEENKLVT--IKNVTHITELQEQLSRANSKLNY 249 Query: 198 ---------QDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACH 248 Q+ F I +VSPKM+HV+E A+++A A +LI G++GTGK+L A A H Sbjct: 250 LENTVSKISQEHYTFGNIFSVSPKMEHVIELAKQVAPTKATVLINGESGTGKELLANAIH 309 Query: 249 QASPRAGKPYLALNCASIPEDAVESELFGH--------APEGKKGFFEQANGGSVLLDEI 300 Q S R P + +NC +IPE+ ESE FG+ EGK G FE A+GG++ LDEI Sbjct: 310 QHSDRKDAPLITINCGAIPENLAESEFFGYCSGAFTGAKKEGKPGAFEIADGGTLFLDEI 369 Query: 301 GEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRL 360 G++ MQAKLLR L +G+F RVG V VDVR+I AT +NL ELVQ FREDLYYR+ Sbjct: 370 GDLPLNMQAKLLRALQEGSFYRVGGIEPVSVDVRIIAATNQNLEELVQNNQFREDLYYRI 429 Query: 361 NVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLK 420 NV L LPPLR+ +DIMPLT+ F+ F+ G+ ++ + L Y WPGNVR+LK Sbjct: 430 NVANLELPPLREKTEDIMPLTKRFIDHFSQVHGIEITEIEQAVMDTLEEYHWPGNVRELK 489 Query: 421 NAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEI---------------- 464 N I R + ++ + LP Y G + +++ Sbjct: 490 NVIERLVIFSTQGKISIK--ALPSYLHPGPKFGSQDQQQLHEQLHRQHSQDDNFSNKSNS 547 Query: 465 ---TSRFERS-VLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 ER +L L ++ + K+A+ L + + + +++ ++ Sbjct: 548 ESKIDELERKTILDSLKKHSFNKAKVARELNIPRSTLYYRMKVLNIN 594 >UniRef50_Q67RR4 Sigma-54-dependent transcriptional regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67RR4_SYMTH Length = 470 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 136/463 (29%), Positives = 213/463 (46%), Gaps = 37/463 (7%) Query: 79 HLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLI--NGFNFLR 136 +L LL+ + V VD + +V N + +L+G + + R Sbjct: 7 QASLGPLLDLVDLAVTIVDAEGRVAAWNEGAERLYGIAAPDILGRAITGFFTPSSLMVRR 66 Query: 137 WLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVA 196 LES + H G L+ PV + + GA+ + R + + Sbjct: 67 VLESGQRVEWTYHQPRPGIYVLVSAAPVIRDGQ-----VVGAIAVERDVTDLVELSNELL 121 Query: 197 AQD--------------------VSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDT 236 F + P ++ + A +A A +LI G+T Sbjct: 122 QARGQVDALQERLSPSPAPAPPSADPFQAVRGRHPAIRRAIRLASLVAATDATVLIRGET 181 Query: 237 GTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGFFE 288 G GK+LFA A HQAS R P++ LNC +IP ESELFG+AP G++G E Sbjct: 182 GAGKELFARAIHQASRRRDGPFVVLNCGAIPATLFESELFGYAPGAFTGANPKGQRGKLE 241 Query: 289 QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQ 348 A+GG++ LDE+G++ Q KLLRFL D F RVG + VDVRV+ AT ++L ELV+ Sbjct: 242 LAHGGTLFLDEVGDLPLESQVKLLRFLEDRKFYRVGGSTPITVDVRVVVATNRDLEELVR 301 Query: 349 KGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLT 408 +G +R+DLY+RLNV TL++PPLR+ +DI L + F+ F+ G P ++ + + Sbjct: 302 QGRYRDDLYWRLNVFTLDIPPLRERREDIAELMQRFLHEFSMRYGRPPAEVHPAVIQAMM 361 Query: 409 RYAWPGNVRQLKNAIYRALTQLDGYELRPQDIL--LPDYDAATVAVGEDAMEGSLDEITS 466 + WPGNVR+L++A+ R + + P+ I L A G A + Sbjct: 362 EHTWPGNVRELRSAVERMVILSPDGAVGPELIPAILGPARRGAAAAGPAAPPCAPGAAPQ 421 Query: 467 RFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQK 509 +++ L + A+ LG+S + N++R GL + Sbjct: 422 DEREAIVAALAATRYNRSAAARLLGISRGTLYNRMRRLGLDAQ 464 >UniRef50_A4J4R9 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J4R9_DESRM Length = 568 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 121/446 (27%), Positives = 214/446 (47%), Gaps = 38/446 (8%) Query: 78 EHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRW 137 L+ LL +PE ++ +D + K+ N + QL L +H Sbjct: 146 HTQQLNYLLSLVPEGIVLLDEQKKISTLNERAEQL------NLAHH-------------- 185 Query: 138 LESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAA 197 +D + H + N + + +++ GA+ ++ + Q Sbjct: 186 -YHHKRDLKDIHTQGHQFNSALSPIQIKVKNFYQDKKFIGAICHTQNFDTISPLPQR--T 242 Query: 198 QDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKP 257 Q F I+ P ++ ++E +++A + +L+ G++GTGK+LFA++ H+ S R P Sbjct: 243 QRSPVFPGIIGKGPALQKILEIIKQVAKSESTVLLRGESGTGKELFAHSIHELSSRNSGP 302 Query: 258 YLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQA 309 ++A+NCA+IPE +ESELFG+ GK G E AN G++ LDEIG+M +QA Sbjct: 303 FVAINCAAIPEALLESELFGYEEGSFTGARKGGKPGKVELANNGTLFLDEIGDMPLTLQA 362 Query: 310 KLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPP 369 KLLR + + VG + + ++VR+I AT +NL E++ G FREDL++RLNV+ + +PP Sbjct: 363 KLLRVIQEKNIEPVGCSYPLPINVRLIAATHRNLEEMIGTGTFREDLFFRLNVIPIFIPP 422 Query: 370 LRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQ 429 LR P+D L ++ ++ P L+ L +Y WPGN+R+L+N + + Sbjct: 423 LRQRPEDTELLLHYYLRKYCILLKKPFKILSYAALQQLVKYHWPGNIRELENLVEYLVNI 482 Query: 430 LDGYELRPQDILL----PDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYP---S 482 + + P+D+ + P + + + R + ++ L R Sbjct: 483 HNQDIISPEDLPITIQQPIKEENQPIGIQPVEPQTRKSSGQRSQAELIQMLNRFGWHTDG 542 Query: 483 TRKLAKRLGVSHTAIANKLREYGLSQ 508 +K A LGVS + ++++Y L + Sbjct: 543 KKKAAAALGVSLATLYRRIKKYKLKE 568 >UniRef50_B1KVR7 Sigma-54 dependent transcriptional regulator n=11 Tax=Clostridium RepID=B1KVR7_CLOBM Length = 470 Score = 471 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 134/441 (30%), Positives = 220/441 (49%), Gaps = 23/441 (5%) Query: 82 LSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESE 141 L E ++ +D + N + D+L+ ++ +I + F+ Sbjct: 28 LQTAFNVAYEGLILIDENYNILKINTMGLNILNSTEDKLKKYSIKDIIRNYKFIDDCLQN 87 Query: 142 PQDSHNE--HVVINGQNF--LMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAA 197 + +IN + + I PV LQD + GA++ +R T + + + NV Sbjct: 88 GIHKLSIDSSFLINNNSIRCITNIMPVKLQDS-----IIGAIISIRDTRHIHKLVNNVVG 142 Query: 198 -QDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGK 256 + F I+ + KMK ++E A+K + +LI G++GTGK+LFA A H S R Sbjct: 143 YKASYTFDDIITKNQKMKSIIELAKKASESDCSILIDGNSGTGKELFAQAIHNHSNRCHG 202 Query: 257 PYLALNCASIPEDAVESELFGHAPE--------GKKGFFEQANGGSVLLDEIGEMSPRMQ 308 P++A+NCA+IP + VESELFG+ G G FE A+GG++ LDEIGE+ +Q Sbjct: 203 PFVAVNCAAIPRELVESELFGYEKGAFTGASKGGYPGKFELADGGTIFLDEIGELPLDIQ 262 Query: 309 AKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLP 368 +KLLR L++ RVG HE +D+RV+ AT +NL E V FR DLYYRLNV+ ++L Sbjct: 263 SKLLRVLDNLKIMRVGGTHEKKIDIRVLAATNRNLSEEVSNKNFRGDLYYRLNVINVHLI 322 Query: 369 PLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALT 428 PL+D +D+ LT FV + + K+A + L Y WPGNVR+L+N + R+ Sbjct: 323 PLKDRVEDVEALTNCFVDKLNIKNPGNFKKIAPEFMDKLKAYHWPGNVRELRNIVERSYY 382 Query: 429 QLDGYELRPQDI--LLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKL 486 + + + + L + +G++ LD + +++ L + + Sbjct: 383 ICEDNIITDKFLNNKLMKNEHHNCCIGKEEPIVPLDILEH---KAIEKALIHCKGNIVQA 439 Query: 487 AKRLGVSHTAIANKLREYGLS 507 ++ LG+S I K+ +Y + Sbjct: 440 SELLGISRATIYRKINKYNID 460 >UniRef50_A4J4M1 Sigma54 specific transcriptional regulator, Fis family n=8 Tax=Firmicutes RepID=A4J4M1_DESRM Length = 470 Score = 471 bits (1213), Expect = e-131, Method: Composition-based stats. Identities = 128/471 (27%), Positives = 217/471 (46%), Gaps = 31/471 (6%) Query: 64 VTDVRTVPWMPSEREHLALSA-----LLEALPEPVLSVDMKSKVDMANPASCQLFGQKLD 118 + R + E + A L+E E ++ V+ + + N + G K Sbjct: 3 IHKSRDHQIIEQELNENQVLASMWDVLIENPYEGMIVVNAQGYIIFINNTYLNILGLKKS 62 Query: 119 RLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDEN-------- 170 + + + +E+ ++ +NG+ ++ P+ + N Sbjct: 63 DAIGKHVWDVTSHSQLPQVIETGRPILYD-FWEVNGRKLIVVRIPIINNEGNVIGAIGKS 121 Query: 171 ------DQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLA 224 +L + +L + ++ + + ++ S +K + + A+K+A Sbjct: 122 LFTDIPSGKLLFTKLQVLEKELAFYKEEIRKVYKAKYSCKNLIGESESVKEIKKLARKVA 181 Query: 225 MLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPEG-- 282 ++ +LITG++GTGK+L A A H A R +P++ +NCA++PE+ +E+ELFG+ Sbjct: 182 SSNSTILITGESGTGKELLAQAIHNAGCRNQRPFVRVNCAAVPENLLETELFGYDDGAFT 241 Query: 283 ------KKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVI 336 K G FE A GG++ LDEIGE+ MQ+KLL L + RVG V +DVRVI Sbjct: 242 GAKKGGKPGKFELAQGGTIFLDEIGEIPLTMQSKLLAVLQERELERVGGIKTVPLDVRVI 301 Query: 337 CATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPR 396 AT +NL ++V+ G FREDLYYRLNV+ LP LR+ +DI L + + Sbjct: 302 SATNRNLEDMVKNGTFREDLYYRLNVINFRLPSLRERSEDIPLLVNYLTHKLNKKLNCHV 361 Query: 397 PKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDA 456 +LT+Y WPGNVRQL+NA+ R + D L + + P + Sbjct: 362 EGYTEQAMQLLTKYHWPGNVRQLENALERMFSFTDDKILSTEHM--PFLKKIVNVNSSEV 419 Query: 457 MEGSLDEITSRFERS-VLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 SL E + E+ +L L + + K AK L + + + K+++Y + Sbjct: 420 NTKSLAETIAETEKKMILDALQKVDGNRNKAAKLLDIHLSVLYRKIKKYDI 470 >UniRef50_A8ZTX6 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A8ZTX6_DESOH Length = 588 Score = 471 bits (1212), Expect = e-131, Method: Composition-based stats. Identities = 139/449 (30%), Positives = 211/449 (46%), Gaps = 26/449 (5%) Query: 72 WMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLI-- 129 + + L++ L E VL+ D+ K+ + + ++ G + + Sbjct: 141 YASFSLYKANIERLIDNLHEGVLAHDLGRKIFFFSKGAERITGLSAVDVIGKNCHDVFVP 200 Query: 130 ----NGFNFLRWLES---EPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVML 182 +F E + + I GQ +++T V L+D + + G V L Sbjct: 201 RLCGENCSFCDGCEPPTFQKKSYSTVAPEIEGQRKELDVTVVPLRDPAGR--IQGVVAAL 258 Query: 183 RSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDL 242 ++ +D F+ I+ +P+M+ + Q + L++ P+ I+G+TGTGK+L Sbjct: 259 ADQTAFKEAVRGQKGED--GFAGIIGRTPEMRSLFHQIRDLSVYDVPVNISGETGTGKEL 316 Query: 243 FAYACHQASPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSV 295 A A H S R P++ +NC ++PE VESELFGH A KKG FE A+ G++ Sbjct: 317 VARAIHGESTRRNGPFVPINCGALPEGLVESELFGHVRGSFSGAVRDKKGRFELAHNGTI 376 Query: 296 LLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFRED 355 LDE+ E+ Q KLLRFL +G +VG + + VDVRVI AT KNL + V KG FRED Sbjct: 377 FLDEVAELPMSTQVKLLRFLQEGVLEKVGSEKQTSVDVRVISATNKNLKKEVAKGTFRED 436 Query: 356 LYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGN 415 LYYRLNV+ ++LPPLR DI L FV A + D +L YAWPGN Sbjct: 437 LYYRLNVVPIHLPPLRMRKNDIPLLANYFVRHAAMGARTGNVTITDDAMGLLAEYAWPGN 496 Query: 416 VRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQ 475 VR+L+N I + + G ++ + T + LD T E T Sbjct: 497 VRELQNIIQFLVIKASGNKITAAHLPPEIQGDGTPLPQKRGRRNKLD--TGSVE----TA 550 Query: 476 LYRNYPSTRKLAKRLGVSHTAIANKLREY 504 L + + K A+ LGV + L ++ Sbjct: 551 LAKAGGNKAKAARLLGVGRATLYRFLNDH 579 >UniRef50_C0GD56 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GD56_9FIRM Length = 454 Score = 471 bits (1212), Expect = e-131, Method: Composition-based stats. Identities = 136/449 (30%), Positives = 213/449 (47%), Gaps = 31/449 (6%) Query: 81 ALSALLEALPE---PVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRW 137 + LLE + L VD S++ + ++ G ++I Sbjct: 8 EIYELLEKAFDEFKGALVVDRNSRIVLLTRGYAEILGVDRKEAIGKPVTEVIPHSRMSEV 67 Query: 138 LESEPQDSHNEHVVINGQNFLMEITPV-------------YLQDENDQHVLTGAVVMLRS 184 L+S + + + G+ ++ P+ + ++ G + L + Sbjct: 68 LKSGEPEI-AQVWEVKGETAIISRVPIKRGEEVIGVVAFSVFRGMDEVRDFLGRLRYLDA 126 Query: 185 TIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFA 244 + R + I+ +SP + V EQ +A + LL+TG+TGTGK+LFA Sbjct: 127 ELNYYRSEVEKLRGARFSLENILGISPAINRVKEQLACIAKNDSTLLLTGETGTGKELFA 186 Query: 245 YACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVL 296 +A H +S R + +NCA+IP++ +ESELFG+ GK G FE AN G++ Sbjct: 187 HALHLSSKRRFGHLIKVNCAAIPDELLESELFGYEEGAFTGARKGGKPGKFELANRGTLF 246 Query: 297 LDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDL 356 LDEIGEM R+QAKLLR L DG R+G + VDVR++ AT KNL ELV+ FREDL Sbjct: 247 LDEIGEMPARLQAKLLRVLQDGEIERIGGTEPLQVDVRIVAATNKNLAELVRHRQFREDL 306 Query: 357 YYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNV 416 YYRLNV+ L++PPLR+ +DI L F+ GV + ++ V Y WPGNV Sbjct: 307 YYRLNVIELHIPPLRERMEDIPCLVVHFIRELNHRLGVKVKGITPEVEEVFQSYHWPGNV 366 Query: 417 RQLKNAIYRALTQLDGYELRPQDI--LLPDYDAATVAVGEDAMEGSLDEITSRFERSVLT 474 R+L N + R + + + DI LP +++ + +L + ++ VL Sbjct: 367 RELYNVLERTMNVIQRDVIGLADINWFLPRVLSSSGRQTSRS-SNTLRNLEAKIIHRVLE 425 Query: 475 QLYRNYPSTRKLAKRLGVSHTAIANKLRE 503 + + A+ LG+ + I NKL+ Sbjct: 426 S---CNGNKSRAAEILGIHRSTIYNKLKR 451 >UniRef50_C8X5E7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X5E7_DESRD Length = 450 Score = 471 bits (1212), Expect = e-131, Method: Composition-based stats. Identities = 123/440 (27%), Positives = 217/440 (49%), Gaps = 26/440 (5%) Query: 85 LLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLI------NGFNFLRWL 138 +L+++ E V +VD+ + N A+ ++ G+ + R L + L Sbjct: 13 VLDSINEGVFTVDLNWTLQGLNAAAEKITGRTREWARGRKCFDLFQSRLCGEDCPIRQTL 72 Query: 139 ESEPQDSHNEHVVINGQNFLMEITPVYLQD---ENDQHVLTGAVVMLRSTIRMGRQLQNV 195 + + ++N + E PV + + + G V + + + + + Sbjct: 73 TTGEPVVNRRTYILNAKE---ECVPVRISTAVLHDAEGRTIGGVETFQDLSEVEKLCREL 129 Query: 196 AAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAG 255 + F IV SP M+H+ E +A + +LI G++GTGK+LFA H S R Sbjct: 130 KSH--YTFDDIVGRSPAMQHIFETLPLVAKSDSTVLIEGESGTGKELFARTLHNRSRRCR 187 Query: 256 KPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQ 308 ++ +NCA++P+ +ESE FG+ A + G FE A+ GS+ LDEIG++S +Q Sbjct: 188 GQFVPVNCAALPDTLLESEFFGYEPGAFTDAKRSRSGRFELAHCGSIFLDEIGDISQALQ 247 Query: 309 AKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLP 368 +LLR L + + +G + ++DVRVI AT +NL LV++G+FR DLYYR+ V+ L +P Sbjct: 248 VRLLRVLQERSVEPLGSEKSRNIDVRVIVATNQNLKNLVEQGLFRRDLYYRIRVIKLRIP 307 Query: 369 PLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALT 428 PLR+ DI L + F+ +F Q + + LT Y +PGNVR+L+N + RA Sbjct: 308 PLRERRDDIPLLIDHFINKFNQLQDKDIAGVTDSVMNRLTEYDYPGNVRELENIVERAFV 367 Query: 429 QLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYR-NYPSTRKLA 487 G + + + D + + D +L E+ ER+++T+ + N + A Sbjct: 368 FCQGALIEMRHLPSELRDTQSRNLLGDKQGLTLKEM----ERALITRALQINKGHRKNSA 423 Query: 488 KRLGVSHTAIANKLREYGLS 507 + LG++ + + K++ + Sbjct: 424 RTLGINPSTLYRKMKALEID 443 >UniRef50_A4J8D6 Putative PAS/PAC sensor protein n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J8D6_DESRM Length = 591 Score = 470 bits (1211), Expect = e-131, Method: Composition-based stats. Identities = 125/478 (26%), Positives = 239/478 (50%), Gaps = 28/478 (5%) Query: 55 MAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFG 114 + I ++ + + + L +++EA + ++ VD + V M N + +L Sbjct: 120 IDLINKVHRALENTEDKLAEAFETNQRLRSIIEASYDGIIVVDSQGVVQMVNSSYFRLQD 179 Query: 115 QKLDRLRNHTAAQLING--FNFLRWLESEPQDSHNEHVVINGQNF---LMEITPVYLQDE 169 D + Q+ + ++ + Q G+N + +P+ Sbjct: 180 SSHDPA-GTSLEQIPLDCHDDVIKVFQEVMQQGKVAFARYQGENLSELTITGSPIL---- 234 Query: 170 NDQHVLTGAVVMLRSTIRMG-------RQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQK 222 +DQ+ V+ L + R + + + ++ M+ VV++A + Sbjct: 235 DDQNSPVHVVISLHDFTELNQLRLQSARYSEELKSLRTKNQKDLIFHDTAMERVVKKALR 294 Query: 223 LAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAP-- 280 ++ + + +LITG++G GK++ A H+ SPRA P++ +NC +IPE +ESELFG+ Sbjct: 295 VSEVDSTVLITGESGVGKEVIARTIHRNSPRAEGPFIEINCGAIPEHLLESELFGYEKGA 354 Query: 281 ------EGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVR 334 EGK G E ANGG++LLDE+G++ +Q KLLR L + R+G V ++VR Sbjct: 355 FTGANKEGKPGMMELANGGTLLLDEVGDLPLNLQVKLLRALQEQEIYRIGGRTAVKLNVR 414 Query: 335 VICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGV 394 ++ AT KNL +++ + FREDL+YRLNV+ +++PPLR+ DI+PL+ F+ +F ++ Sbjct: 415 ILAATNKNLEQMIAEKKFREDLFYRLNVVPIHIPPLRERKSDILPLSMHFLEKFNNKYNF 474 Query: 395 PRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGE 454 R ++++ + +Y WPGN+R+L N + R + + + P + + + + + Sbjct: 475 HRL-FSSEVFKLFEQYPWPGNIRELANLVERLIIMSEQETIYPDQLPPTFFGKPSTSPLQ 533 Query: 455 DAMEG--SLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKK 510 +++ L E + E ++ + + Y S R+ LGV+H+ + K R G+S ++ Sbjct: 534 ISIDEIIPLKEAREQVESELIVKALKQYRSLRRAGDALGVAHSTLLRKARALGISVEE 591 >UniRef50_A4J443 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Peptococcaceae RepID=A4J443_DESRM Length = 455 Score = 470 bits (1211), Expect = e-131, Method: Composition-based stats. Identities = 115/324 (35%), Positives = 179/324 (55%), Gaps = 9/324 (2%) Query: 194 NVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPR 253 S I+ SP M++V + ++A +A +LI G++GTGK+L A A H S R Sbjct: 130 QAQEPASSTGINIIGNSPSMRNVYKDIGRVADSNATVLIQGESGTGKELVARAIHYNSSR 189 Query: 254 AGKPYLALNCASIPEDAVESELFGHAPEG-------KKGFFEQANGGSVLLDEIGEMSPR 306 P++ +NCA++P+ +ESELFG+ K G FE A+ G++ DEIGE+S Sbjct: 190 RNNPFIKVNCANLPDSLLESELFGYEKGAFTGASSLKVGRFELAHEGTIFFDEIGEISLA 249 Query: 307 MQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLN 366 QAKLLR + + F RVG + V+VR++ AT + L + V++G FREDL++RLNV+ + Sbjct: 250 TQAKLLRAIQEKEFDRVGGTKTIKVNVRILAATNRKLKQSVREGEFREDLFFRLNVVNIE 309 Query: 367 LPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRA 426 +PPLRD +DI L F+A++ E + + +L Y WPGNVR+L+N + R+ Sbjct: 310 IPPLRDRKEDIPLLIAHFLAKYNKEFNKEIKGFSKEAIKLLIGYDWPGNVRELENVVERS 369 Query: 427 LTQLDGYELRPQDILLPDYDAATVAVGEDAMEG-SLDEITSRFERS-VLTQLYRNYPSTR 484 + G + P+DI L + E E SL +I S ER +L L N Sbjct: 370 IIMARGAIIVPEDIQLGATVSQQPTELEILDENLSLKQIISDVERKVILKALEENNWCRT 429 Query: 485 KLAKRLGVSHTAIANKLREYGLSQ 508 +AK L ++ ++ K++E G+ + Sbjct: 430 TVAKVLKINRRSLYAKMKELGIEE 453 >UniRef50_A5D2Z2 Transcriptional regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D2Z2_PELTS Length = 562 Score = 470 bits (1211), Expect = e-131, Method: Composition-based stats. Identities = 129/452 (28%), Positives = 216/452 (47%), Gaps = 27/452 (5%) Query: 81 ALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLIN----GFNFLR 136 L + + + +D K N A +G ++ L A L + R Sbjct: 101 ELEDTFNSSFDEIYVIDGKGITKRINKAGETNYGVPVENLLGKNVADLEREGYYNPSVSR 160 Query: 137 WLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGA-----VVMLRSTIRMGRQ 191 + E + +G++ + P++ ++ V+ + ++ LR + Q Sbjct: 161 MVFREKKRITITQKTKSGKHLIATGNPIFDENGEIIRVVVNSRDISELLNLRKQLEDTEQ 220 Query: 192 LQNVAAQDVSAF-------SQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFA 244 L Q + +++A SP+MK V+E K+A + + +LI G++G GK + A Sbjct: 221 LVESYRQQLLKLSQERIRSDELIARSPQMKKVIEMVDKVAQVDSTVLIMGESGVGKGVIA 280 Query: 245 YACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVL 296 H+ S RA P++ +NC +IPE +ESELFG+ EGKKG E ANGG+V Sbjct: 281 SRLHRLSRRAKGPFITINCGAIPEHLLESELFGYEGGAFTGARKEGKKGLLELANGGTVF 340 Query: 297 LDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDL 356 LDEI E+ +Q KLL+ + D RVG + VD+R + AT K++ +V +G+FREDL Sbjct: 341 LDEITELPLSLQVKLLQVIQDKKLIRVGGSKYISVDIRFVAATNKDIQRMVAEGLFREDL 400 Query: 357 YYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNV 416 YYRLNV+ + +PPLR +DI L E F+ + + K + +L Y WPGNV Sbjct: 401 YYRLNVIPVIIPPLRYRQEDIPVLLEYFLEKLNTKYEKN-KKFTPEAIEILRNYNWPGNV 459 Query: 417 RQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEG--SLDEITSRFERSVLT 474 R+L+N + R L +G E+ + ++ + + L E E+ + + Sbjct: 460 RELENLVERLLVTKEGNEITVSHLPEYIFEGKSRFPNRIYVLDICPLKEAVEEMEKQLFS 519 Query: 475 QLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 Y +T K+A L ++ + + K+++Y L Sbjct: 520 MAYNRLKNTYKVADALAINQSTVVRKIQKYNL 551 >UniRef50_B7HB38 Sensory box sigma-54 dependent DNA-binding response regulator n=75 Tax=Bacillaceae RepID=B7HB38_BACC4 Length = 704 Score = 470 bits (1211), Expect = e-131, Method: Composition-based stats. Identities = 138/483 (28%), Positives = 233/483 (48%), Gaps = 39/483 (8%) Query: 48 FESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANP 107 F F + + VTD++ + + L A++ + E + VD K + + NP Sbjct: 227 FAIFKDITEVVDLAEEVTDLKEIQTL--------LEAIINSSEEAISVVDEKGRGLVINP 278 Query: 108 ASCQLFGQKLDRLRNHTAA-QLINGFNFLRWLESEPQDSHNEHVVINGQ--NFLMEITPV 164 A +L G + + A ++ G + + + H+ I + + ++ + PV Sbjct: 279 AYTKLTGLTEEDIIGKPATTDIVEGESMHMKVLRTRRAVRGIHMKIGQKKRDVIVNVAPV 338 Query: 165 YLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAA--------QDVSAFSQIVAVSPKMKHV 216 + +L G+V ++R + + + + +F IV S + Sbjct: 339 IVDG-----ILKGSVGVIRDVSEIQKLTNELNRARQIIRTLEAKYSFDDIVGNSDETTAA 393 Query: 217 VEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELF 276 +EQA+ A A +L+ G++GTGK+LFA+A H S R ++ +NCA+I E +ESELF Sbjct: 394 IEQAKLGANTPATVLLRGESGTGKELFAHAIHNGSNRKYNKFVRVNCAAISETLLESELF 453 Query: 277 GHAPE--------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHE 328 G+ GK+GFFE+AN GS+ LDEIGE+S QAKLLR L + +VG Sbjct: 454 GYEEGAFSGAKRGGKRGFFEEANNGSIFLDEIGELSANTQAKLLRVLQEKEIVKVGGTKA 513 Query: 329 VHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARF 388 + ++VRVI AT NL + + +G FREDLYYRLN + + +P LR DI + + + + Sbjct: 514 IPINVRVIAATHVNLEKAILEGKFREDLYYRLNKIPIQIPSLRQRKGDIPTIADRLIQKI 573 Query: 389 ADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYE--LRPQDILL---- 442 + G L L Y WPGNVR+L+N + RA+ ++ E + + Sbjct: 574 NQDYGRNVEGLTDSAILYLQSYEWPGNVRELENILGRAIIFMNYNETYIDVHHLPPLHNE 633 Query: 443 PDYDAATVAVGEDAMEGSLDEITSRFERSVLTQ-LYRNYPSTRKLAKRLGVSHTAIANKL 501 ++ + + E L+ + + FE +++ + L R + + AK LG+S + KL Sbjct: 634 EQVESKQSHLLPELEEKPLEHLVTEFEGNIIHEYLERFDGNKTQTAKALGISVRNLYYKL 693 Query: 502 REY 504 +Y Sbjct: 694 EKY 696 Score = 78.6 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 22/160 (13%), Positives = 62/160 (38%), Gaps = 6/160 (3%) Query: 61 IAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRL 120 + G+ + E + +L + + ++ +D + +V + N ++ ++ G K + Sbjct: 113 VTGLAHEKEGLIGRLEEQTQQGELILNSTHDGMIVIDREGQVRLFNKSAERIIGYKKEEA 172 Query: 121 RNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVV 180 ++I LR + ++ + + E + NG+ + P+ + + GA Sbjct: 173 IGKYILEVIPTSKLLRIIRTKQIEVNYELTLENGKKIITTRIPIL----KEGGEVQGAFA 228 Query: 181 MLRSTIRMGRQLQNVA--AQDVSAFSQIVAVSPKMKHVVE 218 + + + + V + + I+ S + VV+ Sbjct: 229 IFKDITEVVDLAEEVTDLKEIQTLLEAIINSSEEAISVVD 268 >UniRef50_Q0AVD1 Putative uncharacterized protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AVD1_SYNWW Length = 554 Score = 470 bits (1210), Expect = e-131, Method: Composition-based stats. Identities = 134/440 (30%), Positives = 212/440 (48%), Gaps = 11/440 (2%) Query: 78 EHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRW 137 + L++LL+ E + D + + +N F N + LI N + Sbjct: 115 KEYQLNSLLQTPYEGIAVFDKNAHLLYSNEVCRGFFPCNSSSELNQKMSALIPWTNLQQA 174 Query: 138 LESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAA 197 + + E + +GQ + P+ + + ++ + V L + L+ Sbjct: 175 I-DRGKTFSTEVLSPDGQALRLVFLPIMRHNRSLGVIVKSSQVELSRINEWEQLLEQYQQ 233 Query: 198 -QDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGK 256 + + IV + + A + A + +LITG++GTGK++FA+A H SPR Sbjct: 234 GTARYSINNIVGNNQLICEQKALAARAARSVSTVLITGESGTGKEIFAHAIHNMSPRRKG 293 Query: 257 PYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQ 308 ++ +NCA++PE +ESELFG+ EGK G FE AN G++ LDEI +MS MQ Sbjct: 294 SFVKVNCAAVPETLLESELFGYNEGAFTGALKEGKPGKFELANHGTIFLDEIADMSLSMQ 353 Query: 309 AKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLP 368 AKLLR L + R+G V++RVI AT +NL ELV + FREDL+YRLNV+ LNL Sbjct: 354 AKLLRVLQEKEVERIGSLSSTKVNIRVIAATNQNLAELVSENKFREDLFYRLNVIVLNLL 413 Query: 369 PLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALT 428 PLR DI L+ + R E G K+ ++ Y WPGN+R+L+N I RA+ Sbjct: 414 PLRQRVDDIPLLSHHLLHRLNQELGTRVEKINPEVIQSFCSYDWPGNIRELENTIERAVN 473 Query: 429 QLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNY-PSTRKLA 487 +G + DI SLD I + E++++ ++ +N + K A Sbjct: 474 FCEGNTITINDIPDNIIQRKNHYSSTTGSHSSLDNILGKQEKALIEEVLKNCGGNKSKAA 533 Query: 488 KRLGVSHTAIANKLREYGLS 507 K L + + + KL +Y + Sbjct: 534 KTLNIHRSVLYRKLHKYDIK 553 Score = 53.9 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 35/90 (38%), Gaps = 4/90 (4%) Query: 78 EHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRW 137 L L +L+ + E +L D + N + ++ G +++ L F Sbjct: 10 HDLLLYPILQNIDEGILITDTSLNIIFCNENAGKILGLNPNQILGQNVDCLKPHLTFDNI 69 Query: 138 LESEPQDSHNEHVV----INGQNFLMEITP 163 ++ + + + V+ +N L+EI P Sbjct: 70 IKDQRRIVKDIKVINEDEVNVTRGLLEIRP 99 >UniRef50_A6LV27 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Clostridium RepID=A6LV27_CLOB8 Length = 568 Score = 470 bits (1210), Expect = e-131, Method: Composition-based stats. Identities = 138/449 (30%), Positives = 215/449 (47%), Gaps = 26/449 (5%) Query: 81 ALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLES 140 AL +++A E + ++ K + + + G D +I + L++ Sbjct: 123 ALLTVMDAFNEWFVVINEKGIITSISDDYKEFLG--CDNPIGKKVEDIIENTKMGKVLKT 180 Query: 141 EPQDSHNEHVVINGQNFLMEITPV-------------YLQDENDQHVLTGAVVMLRSTIR 187 D I G + P+ +D +D H L+ ++ L + Sbjct: 181 GIADIGGIQ-EIKGNKMIAMRVPIKKDGKVISAVGKVVFKDISDFHALSKKLLDLEKEVE 239 Query: 188 MGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYAC 247 + + I+ S K++ V + K+A ++ +LI G++GTGK++ A++ Sbjct: 240 FYKSKIAENKTAKYSVENIIGHSNKIRKVKDLIGKVANTNSNVLINGESGTGKEMIAHSI 299 Query: 248 HQASPRAGKPYLALNCASIPEDAVESELFGHAPEGKKG--------FFEQANGGSVLLDE 299 H +S R P++ +NCASIP + +ESELFG+ G FE ANGGS+ LDE Sbjct: 300 HNSSKRYLAPFIKINCASIPAELLESELFGYEEGAFTGAKKGGKKGKFELANGGSIFLDE 359 Query: 300 IGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYR 359 IG+M+ MQAK+LR + + +G VDVR+I AT KNL ELV+KG FREDLYYR Sbjct: 360 IGDMNINMQAKILRVIQEREIESIGGSGVKSVDVRIITATNKNLEELVKKGEFREDLYYR 419 Query: 360 LNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQL 419 LNV+ + PPLR+ +DI L + A V ++ D L Y WPGN+R+L Sbjct: 420 LNVVKIVSPPLRERKEDIPALANALRIKIAKRLDVYVEGISKDAIECLGNYDWPGNIREL 479 Query: 420 KNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQ-LYR 478 +N I RA+ LD + + L + +A D E L I E+ V+ + L R Sbjct: 480 ENVIERAINLLDSNIMIKTEHLSKRFTSAKYKRYSDKNEY-LKTIVEEVEKEVILECLNR 538 Query: 479 NYPSTRKLAKRLGVSHTAIANKLREYGLS 507 N + K A+ LG+S + K+ E+ L Sbjct: 539 NNWNKNKTAQILGISRAGLYKKIEEFNLK 567 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 15/126 (11%), Positives = 50/126 (39%), Gaps = 7/126 (5%) Query: 82 LSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESE 141 +++ + E ++ +D K + + N + +FG +R +++ + ++ Sbjct: 7 FELIIQNVNEALIVIDKKGIILVINKKAEDMFGISSERNLGKYIGEVLPEIQIPKITKAG 66 Query: 142 PQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVS 201 + ++ + ING+ + P+ ++ G++ + +++QN D Sbjct: 67 KAEL-SQMIFINGKEIISNRIPII-----KDEMVEGSIEIFTDITD-QKKMQNKINLDKD 119 Query: 202 AFSQIV 207 ++ Sbjct: 120 YIDALL 125 >UniRef50_A6LJ55 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Thermotogaceae RepID=A6LJ55_THEM4 Length = 564 Score = 470 bits (1210), Expect = e-131, Method: Composition-based stats. Identities = 132/447 (29%), Positives = 227/447 (50%), Gaps = 19/447 (4%) Query: 79 HLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAA-QLINGFNFLRW 137 L A++++ + + D + + N A ++ G K + + A + G + Sbjct: 121 EARLKAIIDSTYDAISVADENGYIVLVNKAYTKITGLKPEEVIGKPATVDIAEGESIHMK 180 Query: 138 LESEPQDSHNEHVVIN--GQNFLMEITPVYLQDENDQ-----HVLTGAVVMLRSTIRMGR 190 + + N + + + ++ P+ ++ + H ++ + + R + R Sbjct: 181 VARTKKPIFNARLKVGPLKREVIVNAMPLIVRGKFSGSVAVVHDVSEILELTRELNEVKR 240 Query: 191 QLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQA 250 ++ + AQ F I+ S K+ EQA+K+A A + + G++GTGK+LFA+A H Sbjct: 241 YIRQLKAQ--YTFDDIIGKSEKLLIAKEQAKKVAKTPATVFLRGESGTGKELFAHAIHNE 298 Query: 251 SPRAGKPYLALNCASIPEDAVESELFGHAPE--GKKGFFEQANGGSVLLDEIGEMSPRMQ 308 S R P++ +NCA+IPE+ +E ELFG+ + G+KG E+A GG++ LDEIG+M +Q Sbjct: 299 SNRKNNPFVTVNCAAIPENMLEIELFGYTKDTFGQKGLIEEAEGGTLFLDEIGKMPISVQ 358 Query: 309 AKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLP 368 AK+LRF+ + F +G + V+VR+I +T N+ EL++K F DLYYRLNV + +P Sbjct: 359 AKILRFIENREFLPIGSNRVKKVNVRIIASTNMNIEELIRKEQFLIDLYYRLNVFPIYIP 418 Query: 369 PLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALT 428 PLR+ +DI L + + + G + + L +Y WPGN+R+L+N I RA+ Sbjct: 419 PLRERKEDIEELAKFLAKKIGRQYGRNVVDITDNAVEYLKKYDWPGNIRELENIIGRAII 478 Query: 429 QLDGYE--LRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLT-QLYRNYPSTRK 485 +D E L + I L + ++ EGSL + FER ++ L N Sbjct: 479 NMDIGETILDKRHIPLLFLENNSILK----KEGSLRSMVEDFERKMIESSLKENNGDRTL 534 Query: 486 LAKRLGVSHTAIANKLREYGLSQKKNE 512 AK+L +S + K+ YGL +K Sbjct: 535 TAKKLKISLRTLYYKMERYGLLKKGER 561 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 44/114 (38%), Gaps = 6/114 (5%) Query: 83 SALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEP 142 +LE++ E V+ VD +K+ N + + K + A +I +++ Sbjct: 8 RTVLESIIEGVIIVDKDAKILYINKRAMHILKLK-EGFIGKHVADVIPNTRLHIVVQTGV 66 Query: 143 QDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVA 196 + V G+N ++ + ++ + GAV + R M + + + Sbjct: 67 PEVD--EVQNVGENIIITSR---MPLTDECGNILGAVAVFRDITSMRKLAEEIT 115 >UniRef50_A4IRU9 Sigma-54-dependent transcriptional activator n=3 Tax=Geobacillus RepID=A4IRU9_GEOTN Length = 486 Score = 470 bits (1210), Expect = e-131, Method: Composition-based stats. Identities = 140/483 (28%), Positives = 232/483 (48%), Gaps = 45/483 (9%) Query: 64 VTDVRTVPWMPSEREHL-----ALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLD 118 V D++ + P +H+ L+ L + V D + K+ N A ++ G K + Sbjct: 2 VPDLKHINRFPMNNQHMLQHECVYKIALDHLYDGVFITDNECKILYVNEAYTKMSGLKYE 61 Query: 119 RLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVI----NGQNFLMEITPVYLQDENDQHV 174 + H L F + + I +G L+ P+Y ++ Sbjct: 62 DVVGHYVDDLEAKGIFKNSTSPHVRRENKIISSIGKAKDGVEMLITGKPIYDENNE---- 117 Query: 175 LTGAVVMLRSTIRMGRQLQNVAAQD---------------------VSAFSQ--IVAVSP 211 L VV R + Q + + F+ I+ S Sbjct: 118 LIYVVVNQRDISDLEIMRQKLIVTENKMAVVEKERKKKEEENEYYKKQFFNNTGIIGDSE 177 Query: 212 KMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAV 271 +++ V+ K+A L +LITG++G GK++ A Q S R K ++ +NCA+IP + + Sbjct: 178 EIRDVIYLINKIAPLDVTVLITGESGVGKEVIANEIFQKSSRKNKQFIKVNCAAIPTNLL 237 Query: 272 ESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVG 324 ESELFG+ A + KKG F+ A+GG++ LDEIG++ +Q KLLR L VG Sbjct: 238 ESELFGYEKGAFTGADKAKKGLFQLADGGTIFLDEIGDIPLEIQPKLLRALQQKEVVPVG 297 Query: 325 EDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELF 384 +DVR+I AT K+L + V++G FR+DLYYRLNV + +PPLR+ +DI L E F Sbjct: 298 GTQIQKLDVRIIAATNKDLSQQVKEGKFRKDLYYRLNVFPIEIPPLRERKRDIYALGEYF 357 Query: 385 VARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPD 444 + ++ + G L+++ ++L Y WPGNVR+L+N I R + D + +D + Sbjct: 358 LKQYNKKYGKSVV-LSSEAYSLLMNYDWPGNVRELQNIIERLIIISDDQTVINKDQIEKI 416 Query: 445 YDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREY 504 T+ + +G L EI E+ +L + +N +TRK AK+L + + + KL++Y Sbjct: 417 MFPNTMLDITKSEKG-LKEIIQEIEKEILIDVLKNTGTTRKAAKKLKIDQSTLVKKLKKY 475 Query: 505 GLS 507 G++ Sbjct: 476 GIN 478 >UniRef50_C8WQE7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WQE7_ALIAD Length = 535 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 137/452 (30%), Positives = 219/452 (48%), Gaps = 17/452 (3%) Query: 74 PSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFN 133 + L + + V D N A+ +L+G + + L + L Sbjct: 84 EMREAYEELELIFSEAFDEVFVTDGDGITLRVNRAAERLYGLRQEELIGRSVFDLEREGV 143 Query: 134 FLRWLESEPQDSHNEHVVI----NGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIR-- 187 F + + V+ +G+ PV+ Q N + V++ A + IR Sbjct: 144 FYPSVTGLALKLRRQVTVLQTTSDGKQLWATANPVFDQHGNIRIVISTA-KEISDVIRPE 202 Query: 188 MGRQLQNVAAQDVSAFS-QIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYA 246 + R +V D +V SPKM+HV A+++A L+ G+TG GK A Sbjct: 203 VMRAETSVGGMDADEQPPNMVTRSPKMRHVFHIAKRVAGTDISCLLLGETGVGKSTLAQW 262 Query: 247 CHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLD 298 H+ SPR P++ +NCA++PE +ESELFG+ GK G E A+ G++ LD Sbjct: 263 IHRMSPRHRGPFVEVNCAALPESLLESELFGYESGAFTGALKSGKPGKVELAHEGTLFLD 322 Query: 299 EIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYY 358 EI E+ +Q+KLL F+ R+G VD R+I AT ++L ++V+ G+FR DLYY Sbjct: 323 EIAEVPLHLQSKLLDFVERRVLTRIGGTRMHTVDARIIAATNRDLKQMVRDGLFRADLYY 382 Query: 359 RLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQ 418 RLN + +PPLR+ +DI L + + R DE ++ ++ L Y WPGNVR+ Sbjct: 383 RLNGAEIEVPPLRERKEDIPELVQQLLRRIFDECPTMVKRVHPEVIRRLQAYTWPGNVRE 442 Query: 419 LKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYR 478 L++ + R + DG + P D+ D T V G L ++ ++ ER++ R Sbjct: 443 LEHVVRRLVILTDGDYILPSDLQDEWIDEETSGVTPCTSRGPLAQL-AQLERNLYADAAR 501 Query: 479 NYPSTRKLAKRLGVSHTAIANKLREYGLSQKK 510 + ST ++A+ LGVS + KL++YGLS K+ Sbjct: 502 HCRSTYEIAEALGVSQATVVRKLKKYGLSIKR 533 >UniRef50_Q24N84 Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense Y51 RepID=Q24N84_DESHY Length = 650 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 147/495 (29%), Positives = 242/495 (48%), Gaps = 34/495 (6%) Query: 36 IGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLS 95 G + + L + +L I G+ + ++ A LE E +L Sbjct: 167 EGTLTITSPNLRSHNSQTLGLAISMAMGIQKQFQIAL-----QNEIFDAALENTEEIMLF 221 Query: 96 VDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVIN-- 153 D K+ N + ++ L ++ F + + + + Sbjct: 222 SDDDGKIIRTNMNALKIIELFGRDLIGSQVEDVLGEQPFFKSVAETGNTLSHIDFQLKYT 281 Query: 154 -GQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQN-VAAQDVSAFSQIVAVSP 211 + FL I P+ +D+ ++G +V+L+ T + + ++ AA F I+ SP Sbjct: 282 KKKLFLTSIKPIKSKDK-----ISGYIVLLKETDHIKKAAKSPYAAMVKFTFDTIIGSSP 336 Query: 212 KMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAV 271 + + A+K A ++ +LI G++GTGKD++A A H R PY+A+NCA+IP++ + Sbjct: 337 QSMKLKSMAKKFAHFNSNILIQGESGTGKDVYAQAIHFE-NRPNGPYIAVNCAAIPQNLI 395 Query: 272 ESELFGHA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRV 323 SELFG+ +GK G E ANGG++ LDEIG+M +QA LLR L D V Sbjct: 396 ASELFGYEGGAFTGAERQGKPGKIELANGGTLFLDEIGDMPLELQAVLLRVLEDKMIMHV 455 Query: 324 GEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTEL 383 G + VD R+I AT KNL++LV+ FREDLYYR++V L++PPLR+ DI+ L E Sbjct: 456 GGSRYIPVDFRLITATNKNLLDLVKNNQFREDLYYRISVFKLSVPPLRERGSDIVQLIEH 515 Query: 384 FVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDIL-- 441 F+ ++ QG+ P L+ +L +Y WPGNVRQL+N I A+ + +RP+++ Sbjct: 516 FIRIYSSNQGIDEPILSNSAKYLLLQYNWPGNVRQLQNTISYAVCMSNEGIIRPENLPEE 575 Query: 442 -LPDYDAATVAVGEDAMEGSLDEI-------TSRFERSVL-TQLYRNYPSTRKLAKRLGV 492 L + + + + E S +EI E+ + L+ + R AK LG+ Sbjct: 576 ILSYQPPSGLTLAQPEPEPSPNEIILDNTPSMKEIEKKAIMKALHESNNHIRGAAKILGL 635 Query: 493 SHTAIANKLREYGLS 507 S + + K++EY +S Sbjct: 636 SKSTLYRKIKEYEIS 650 >UniRef50_A6TVV8 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Alkaliphilus RepID=A6TVV8_ALKMQ Length = 470 Score = 468 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 139/469 (29%), Positives = 238/469 (50%), Gaps = 34/469 (7%) Query: 69 TVPWMPSEREHLAL-------SALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLR 121 V SE + L LL+ ++ VD + ++ N +L G K + + Sbjct: 7 EVEIESSEDQLQQLKDSLEMIEELLDNAYHGMVLVDHEGRIIKWN--YEKLMGIKEEEVL 64 Query: 122 NHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVY-------------LQD 168 ++I ++ ++ + I G + + P+ +D Sbjct: 65 MRPVEEIIENTRLHIVAKTGEKELFDVQ-KIQGYDMITSRIPIVKDGRVIGAAGTVLFKD 123 Query: 169 ENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSA 228 + L + +L ST+ R + +F IV + +M ++ E A+K A ++ Sbjct: 124 VKELESLVKRMKVLESTVDEYRGEIKRLHRAKYSFEHIVTQNRQMIYLKELARKAAESNS 183 Query: 229 PLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH--------AP 280 +LI G++GTGK+ FA+A H+AS R ++ +NCA+IP + +ESELFG+ Sbjct: 184 TVLIQGESGTGKEFFAHAIHRASLRRYGSFITINCAAIPNELLESELFGYDAGAFTGAKK 243 Query: 281 EGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQ 340 +GK G FE NGG+++LDEIG M MQAK+LR L F R+G + + +DVR+I AT Sbjct: 244 QGKVGKFELGNGGTIVLDEIGAMPLEMQAKILRILESREFERIGGNDRIQLDVRIIAATN 303 Query: 341 KNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLA 400 + L E +++G FR+DLYYRLNV+ + +PPLR+ +DI L + + + A + G+ +L Sbjct: 304 EPLEEAIKEGRFRQDLYYRLNVIPIEIPPLRERIEDIPILAQRILEKLAVDLGIEMKELT 363 Query: 401 ADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGS 460 + VL +Y WPGNVR+L+N + RAL + G + P+D LP + + + + Sbjct: 364 FETIEVLKKYQWPGNVRELRNTLERALNIVQGDMIYPED--LPGHLIESSSKSSYSHSLL 421 Query: 461 LDEITSRFERSVLTQLYR-NYPSTRKLAKRLGVSHTAIANKLREYGLSQ 508 L +I ++ E + R + + AK+LG+ TA+ K++ Y +++ Sbjct: 422 LKDIMAKTEIEAIQSALRDSNGNKSVAAKQLGIHRTALYKKIQAYEMNK 470 >UniRef50_Q9K633 Transcriptional regulator n=2 Tax=Bacillus RepID=Q9K633_BACHD Length = 559 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 123/448 (27%), Positives = 208/448 (46%), Gaps = 27/448 (6%) Query: 82 LSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESE 141 L A++E + ++ VD + + + G + ++I +S Sbjct: 117 LEAMMEFAFDGLVMVDREGYITALSTDYASFLGVNQEEAIGKHVTEVIENTRMHIVAKSG 176 Query: 142 PQDSHNEHVVINGQNFLMEITPVYLQDENDQHV-------LTGAVVMLRSTIRMGRQLQN 194 + E I G + P+ + V + G + + M ++L+ Sbjct: 177 -KTEVAELQKIRGDYMIATRVPIIKNGQVTGAVGKVLFKNVGGFNSLYKRVNSMEKELKR 235 Query: 195 VAA------QDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACH 248 + FS I+ SP + ++A+K A + +L+ G++GTGK+LFA++ H Sbjct: 236 YKGEMKELNKAAYQFSNIIGSSPLLVQAKKEAKKAAKSDSNVLLLGESGTGKELFAHSIH 295 Query: 249 QASPRAGKPYLALNCASIPEDAVESELFGHAPEGKKG--------FFEQANGGSVLLDEI 300 S RA ++ +NCA+IP D +ESELFG+ G FE A+GG++ LDEI Sbjct: 296 NESRRAFGSFVKVNCAAIPADLLESELFGYEEGSFTGAIKGGKKGKFEAADGGTIFLDEI 355 Query: 301 GEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRL 360 GE+ MQ K LR L + ++G VDVRVI AT ++L ++VQ G FR DLYYRL Sbjct: 356 GELPLHMQVKFLRVLQEKEVEKIGSSTGKSVDVRVIAATNRDLEKMVQAGEFRLDLYYRL 415 Query: 361 NVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLK 420 NV+ + +P LRD DI L F+ ++ + + + + L +Y WPGN+R+L+ Sbjct: 416 NVMPITVPSLRDRKGDIPRLARYFLEKYRERMNMVARDIHPEAILALEQYEWPGNIRELE 475 Query: 421 NAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYR-N 479 N I RA+ + ++ + L G L+++ E+ + R Sbjct: 476 NVIERAVNVAENEKMIRRCHLPEKITGVQFRSG----VRPLEQVMEETEKEAILNALRVT 531 Query: 480 YPSTRKLAKRLGVSHTAIANKLREYGLS 507 + K A L +S T++ K++++ LS Sbjct: 532 NNNRTKAANLLQISRTSLYEKMKKHRLS 559 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 43/130 (33%), Gaps = 7/130 (5%) Query: 80 LALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLE 139 L L +L+ LP V+ V V N +L + +L++ R + Sbjct: 7 LKLEKVLDQLPVGVMVV-ADGVVTYCNEPVRKLLTMTSFHVIGRNVTELLDPTLLERIMP 65 Query: 140 SEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGR-QLQNVAAQ 198 ++ + G+ L+ + L + L + + Q++ + A Sbjct: 66 GAKV-----NITVKGKRLLVWKDQIMLSGDEVDLYLLTLEGETDEFLHVNDHQVELLEAM 120 Query: 199 DVSAFSQIVA 208 AF +V Sbjct: 121 MEFAFDGLVM 130 >UniRef50_B8FTG8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfitobacterium hafniense RepID=B8FTG8_DESHD Length = 680 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 130/475 (27%), Positives = 224/475 (47%), Gaps = 21/475 (4%) Query: 49 ESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPA 108 S + + +I DV + L +LE + E V++++ ++ +N Sbjct: 208 SSLAEAIGNQIKIQNSYDVLNQVNNDLRKATETLKIILEFIDEGVITIEPNGRILSSNHE 267 Query: 109 SCQLFGQKLDRLRNHTAAQLI-NGFNFLRWLESEPQDSHNEHVVING---QNFLMEITPV 164 ++ +R + + + ++ + + E V+NG + +L+ + PV Sbjct: 268 GSRILNVNHGEIRGRNIGEFLLPRSALMDYVADKKTVDYMEEYVVNGREEKQYLVSLRPV 327 Query: 165 YLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQ-DVSAFSQIVAVSPKMKHVVEQAQKL 223 Y Q ++ L A++ + ++ + + F IV S M A++ Sbjct: 328 YKQGNDE---LDFAILRFNHSDKINALVNTRSGAVAKFRFEDIVGQSEAMLKAKALARRF 384 Query: 224 AMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA---- 279 A +L+ G++GTGK+LFA A H S R G P++A+NCA++P + +ESELFG+ Sbjct: 385 ARTRENVLLLGESGTGKELFAQAIHN-SHRPGGPFIAVNCAAMPRNLIESELFGYESGSF 443 Query: 280 ----PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRV 335 G+ G E ANGG++ LDEIG+M +QA LLR L D R+G + VD R+ Sbjct: 444 TGAEKNGRPGKIELANGGTLFLDEIGDMPIELQAVLLRVLQDKMVMRIGGRNYRQVDFRL 503 Query: 336 ICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVP 395 I AT ++L Q+ FREDLY+R++VL + +PPLR DI L E F+ +A G+P Sbjct: 504 ITATNQDLKLSAQERKFREDLYFRISVLNIEIPPLRSRGFDIAILAEHFIENYAKRVGLP 563 Query: 396 RPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGED 455 ++ + + Y WPGNVRQL+NA+ A+ + ++ + + T Sbjct: 564 AAVISPEAKRRILEYNWPGNVRQLENAMIYAVNLSEEGQIMLSHLPKELSEKRTALPMVS 623 Query: 456 AMEGSLDE---ITSRFERSVLTQLYRNYPSTRKLA-KRLGVSHTAIANKLREYGL 506 E E E+ + + ++ +A LG+S T + KL+E+ + Sbjct: 624 EKECDKPEELFSMKDLEKVTIKKALERAGNSVAIASDLLGISKTTLYRKLKEHNI 678 >UniRef50_Q46802 Uncharacterized sigma-54-dependent transcriptional regulator ygeV n=60 Tax=Gammaproteobacteria RepID=YGEV_ECOLI Length = 592 Score = 468 bits (1204), Expect = e-130, Method: Composition-based stats. Identities = 127/493 (25%), Positives = 223/493 (45%), Gaps = 43/493 (8%) Query: 41 LNFAELEFESFSSLMAEIRRIAGVTDVRTVPWM----------PSEREHLALSALLEALP 90 ++ + E + +R + VR + + P + + +++ + Sbjct: 113 ISLIAVTHEQQEHISDNLREFSD--YVRHISTIFVSKLLEDQGPGDNISKIFATMIDNMD 170 Query: 91 EPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHV 150 + VL VD +++V N + + G + + ES H +H+ Sbjct: 171 QGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR------FRPLTFESNFTHGHMQHI 224 Query: 151 VINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVS 210 V + I H + G + L + + A D Q+V Sbjct: 225 VSWDDKSELII--------GQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGEC 276 Query: 211 PKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDA 270 M+ + ++A + +++ G++GTGK++ A A H+ S R KP++A+NCA+IPE Sbjct: 277 RVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQL 336 Query: 271 VESELFGHAPE--------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRR 322 +ESELFG+ GK G + AN G++ LDEIG+M +QAKLLR + Sbjct: 337 LESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILP 396 Query: 323 VGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTE 382 +G + VD+R+I AT +NL + + +G FREDL+YRLNV+ + LPPLR+ +DI L Sbjct: 397 IGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVH 456 Query: 383 LFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILL 442 F+ G P +A D+ +L ++ WPGN+R+L N + + + E+ +L Sbjct: 457 YFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLP 516 Query: 443 PDYDAATVAVGEDAMEG-----SLDE----ITSRFERSVLTQLYRNYPSTRKLAKRLGVS 493 P+ D E SLD+ E+ ++ + + S +++A LG+ Sbjct: 517 PNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKQVADELGIG 576 Query: 494 HTAIANKLREYGL 506 + K+++Y L Sbjct: 577 IATLYRKIKKYEL 589 >UniRef50_C4XT50 Fis family transcriptional regulator n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XT50_DESMR Length = 480 Score = 467 bits (1203), Expect = e-130, Method: Composition-based stats. Identities = 145/467 (31%), Positives = 220/467 (47%), Gaps = 45/467 (9%) Query: 81 ALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQL-----INGFNFL 135 L A+L+++ + V D AN A QL G L +L N Sbjct: 11 HLDAILDSIEDGVFIADRDGYALKANAAYEQLTGMAKAELIGKNVEELKREGLFNIAPIT 70 Query: 136 RWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGA-----VVMLRSTIRMGR 190 + + + + + V + ++ ++ P+ D V+ A + +R I + Sbjct: 71 PEIVATGRPASSIQVTRDNRSMTIDGKPIRDPDGKVSLVVLYARDITLMARMRERISRQQ 130 Query: 191 QLQNVAAQDVSAF-------SQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLF 243 +L + F + +A + MK +++ +++A A L+ G+TG GK+LF Sbjct: 131 ELIETYQHQMDFFIREGGGITSFIAENSAMKRLMDLLRRVAATDAVALVLGETGVGKELF 190 Query: 244 AYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGFFEQANGGSV 295 A H+ASPR KP++ ++CASIPE+ +ESELFG+AP G+ GFFE A GG++ Sbjct: 191 ARMIHEASPRREKPFVKVDCASIPENLIESELFGYAPGAFTGAHPKGRVGFFEMAEGGTI 250 Query: 296 LLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFRED 355 LDEIGEM +Q+KLLR L D VG +VRVI AT +NL + G FR D Sbjct: 251 FLDEIGEMPLPLQSKLLRVLQDRELTPVGSSKSRKTNVRVIAATNRNLEAEAKVGTFRSD 310 Query: 356 LYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGN 415 L++RL V L +PPLRD P DI+PL +F+ RF R L+ + +L Y WPGN Sbjct: 311 LFFRLRVAVLEIPPLRDRPDDILPLARMFLQRFGSRYRK-RTTLSLESERILAHYNWPGN 369 Query: 416 VRQLKNAIYRALTQLDGYELRPQDILL-------PDYDAATVAVGEDAM----------- 457 VR+L+N I + D + ++ P A G + Sbjct: 370 VRELENLIEGLVITCDSGRIEADELPTAMRVTECPLASDAPRPTGPATLAPPPMAAPEPD 429 Query: 458 -EGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLRE 503 E E+ + FER L ++ S + AKRLG+ T I KL++ Sbjct: 430 WERPYKEVIAAFERDYLEGAIEHFGSVGEAAKRLGLDRTTIFRKLKK 476 >UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Clostridium tetani RepID=Q893M0_CLOTE Length = 595 Score = 467 bits (1202), Expect = e-130, Method: Composition-based stats. Identities = 122/403 (30%), Positives = 206/403 (51%), Gaps = 18/403 (4%) Query: 123 HTAAQLINGFNFLRWL--ESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVV 180 L N + + SE + + +V G+ ++ + + + + G+ Sbjct: 193 KNRTTLKEDINLVNNIFKASEKYNKNIIKMVYGGKIEDADMAGYFYDNTDAVGYIGGSSF 252 Query: 181 MLRSTIRMGRQLQ------NVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITG 234 + R+ + + N D F +++ S MK + E +K+A + +++TG Sbjct: 253 ERIPSERIIKSVTHEFKNFNKLNNDKIGFKEMIGQSNSMKELYELIEKVADKNVNIMVTG 312 Query: 235 DTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGFF 287 ++GTGK+L A H R P++ +NCA++P+D +ESELFGH A + + G F Sbjct: 313 ESGTGKELVVRALHYGGERRDNPFVKVNCAAMPKDILESELFGHEKGAFTGADKKRVGRF 372 Query: 288 EQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELV 347 E A+ G++ LDEIG+M +QAK LR + F RVG + + VDVR+ICAT K+L + V Sbjct: 373 ELAHKGTLFLDEIGDMDLSIQAKFLRIIQQQEFERVGGNKTIKVDVRIICATNKDLKKEV 432 Query: 348 QKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVL 407 ++G FREDLYYRLN +TL +PPLR+ +DI L F+ + PK++ ++ L Sbjct: 433 KEGRFREDLYYRLNTITLYVPPLRERKEDIPFLIHHFLKEKGKKFDKIAPKISPEVFDAL 492 Query: 408 TRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPD-YDAATVAVGEDAMEGSLDEI-T 465 Y WPGNVR+L+NA+ RA+ +R ++ + + + + EI Sbjct: 493 MEYDWPGNVRELENAMERAIILCGKDLIRLNNLPISIVKNNKEFDESKHVTPIDIKEITI 552 Query: 466 SRFERS-VLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 ER ++ L + + K +K LG+S + NK++E+ + Sbjct: 553 RNMEREIIIEALEKCDWNRTKTSKSLGISRRTLYNKMKEFNIR 595 >UniRef50_C0GJ16 GAF modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJ16_9FIRM Length = 622 Score = 467 bits (1202), Expect = e-130, Method: Composition-based stats. Identities = 125/429 (29%), Positives = 204/429 (47%), Gaps = 34/429 (7%) Query: 87 EALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSH 146 E + + +++D + + N +L G+K + L H AA + + RW + Sbjct: 219 EMMRDGFIAIDSRGIITEINREGAKLLGRKREELVGHLAADVFDNR---RWSFNGKSLYM 275 Query: 147 NEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQI 206 N + L+++T ++Q GA+ +L R R + + Sbjct: 276 QSSESDNLTSRLVKVT-------DEQGAPMGAIGVLSPAPREERSQETMW---------- 318 Query: 207 VAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASI 266 V S + V +A K A S+ +LI G++GTGK++ A HQ SPR KP++A+NCA+I Sbjct: 319 VGRSQATQSVFSRADKAAQTSSTVLIQGESGTGKEIVARYLHQQSPRHNKPFVAINCAAI 378 Query: 267 PEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDG 318 P +ESELFG+A G G FE A GG+V LDEIG+M +QA LLR L + Sbjct: 379 PATLIESELFGYADGAFTGAKKGGAPGKFEVAQGGTVFLDEIGDMPSNVQASLLRVLQER 438 Query: 319 TFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIM 378 R+G+ VDVRV+ AT ++L +++G FR DLYYRL V+T+++PPL DI Sbjct: 439 EVVRIGDSRPRPVDVRVVAATNRDLSTRIEQGDFRLDLYYRLKVVTIDVPPLSRRLDDIY 498 Query: 379 PLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQ 438 L FV + G + ++ L Y WPGN+R+L+N + + + L Sbjct: 499 DLVPYFVKKICRASGREPMGVTDEVYEALLNYHWPGNIRELENCMESMVAMAEHSYLTTD 558 Query: 439 DILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIA 498 D+ + + + + + +++++ L A+ LG+ T + Sbjct: 559 DLPAEIAKNVSAVSCGETL------LEQQTKKAIMQALAETNGKIAPAARLLGIGRTTLY 612 Query: 499 NKLREYGLS 507 K+ E G+ Sbjct: 613 RKIEELGIK 621 >UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulator n=3 Tax=Myxococcus RepID=Q1D4K8_MYXXD Length = 471 Score = 467 bits (1202), Expect = e-130, Method: Composition-based stats. Identities = 131/345 (37%), Positives = 189/345 (54%), Gaps = 10/345 (2%) Query: 168 DENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLS 227 D + V G V+ RS + L++ V F I+ SP+++ + + ++ A Sbjct: 107 DADQVLVTLGKVLEKRSLRQEAEALRDQVRSRVRRFHDIIGESPQLQGIYDVIRRAAGTR 166 Query: 228 APLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE------ 281 A +LI G++GTGK+L A A HQ SPR KP++ ++CA++ E+ +ESELFGH Sbjct: 167 ATVLILGESGTGKELIAQALHQESPRKDKPFIRVHCAALSENLLESELFGHEKGSFTGAL 226 Query: 282 -GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQ 340 K+G FE A+GG++ LDEIGE+SP +Q KLLR L F RVG + VDVR++ AT Sbjct: 227 ARKEGRFELADGGTLFLDEIGEISPAVQVKLLRVLQQREFERVGGTQTLKVDVRIVAATH 286 Query: 341 KNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLA 400 ++LV V+ G FREDLYYRLNV+++ LPPLRD D+ L F+ +++D G LA Sbjct: 287 RDLVAEVKAGRFREDLYYRLNVVSVTLPPLRDRKSDVPALVNHFLEKYSDSYGKQVRGLA 346 Query: 401 ADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGS 460 L + WPGN+R+L+NAI RA+ G EL D LP G Sbjct: 347 PGTLQALLSHDWPGNIRELENAIERAVVLAQGQELSTDD--LPPVLRGPRPHGTSTGALI 404 Query: 461 LDEITSRFERSVLTQLYRN-YPSTRKLAKRLGVSHTAIANKLREY 504 + ER + + ST + A+ LG+S I +L+EY Sbjct: 405 PGATLAAIEREAILRTLEMVQGSTSRAAEVLGISVRKIQYRLKEY 449 >UniRef50_D0MEW0 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MEW0_RHOM4 Length = 495 Score = 467 bits (1202), Expect = e-130, Method: Composition-based stats. Identities = 135/340 (39%), Positives = 189/340 (55%), Gaps = 14/340 (4%) Query: 172 QHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLL 231 Q + L +R + Q + F +IV SP M+ V + ++ A +L Sbjct: 158 QAAIAIENAQLYQALREENRRLRSEIQRLHGFDEIVGQSPAMREVFDTMARVLDTDATVL 217 Query: 232 ITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH-------APEGKK 284 I G++GTGK+L A A H S R KP++ + C S+P++ +ESELFG+ A KK Sbjct: 218 IEGESGTGKELIARAIHYNSERKDKPFVVVFCGSLPDELLESELFGYKKGAFTGALSDKK 277 Query: 285 GFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLV 344 G FE A+GG+V LDE+G++SPRMQ LLR L +G RRVG+ VDVRVI AT K L Sbjct: 278 GLFEVADGGTVFLDEVGDLSPRMQTALLRVLQEGEIRRVGDTQVRKVDVRVISATNKPLR 337 Query: 345 ELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLN 404 ELVQ+G FREDLYYRLN + + +PPLR DI L F+ ++A ++ + Sbjct: 338 ELVQQGKFREDLYYRLNTIQITVPPLRHRRGDIPLLAHHFLDKYAVKKRAHIKGFTPEAL 397 Query: 405 TVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEI 464 +L RY WPGNVR+L+N I RA+ G + P+D+ LPD D A + L E+ Sbjct: 398 ELLERYHWPGNVRELENTIERAVVLARGELITPEDLRLPDTDGADPFEPD----LPLKEV 453 Query: 465 TSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREY 504 R VL L R+ + + A+ LGVS + KL+E+ Sbjct: 454 ERRV---VLRTLKRHGGNISETARVLGVSRRWLHYKLKEW 490 >UniRef50_C6PY17 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PY17_9CLOT Length = 643 Score = 466 bits (1201), Expect = e-130, Method: Composition-based stats. Identities = 128/477 (26%), Positives = 235/477 (49%), Gaps = 33/477 (6%) Query: 49 ESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPA 108 + ++A I + V+ + + + + L ++P +++ DM K+ + N Sbjct: 185 HTLGMVIAASNAIEEMLRVKEYNKIQN-INNKHIKNLFNSIPVAIITSDMNGKIKVCNNK 243 Query: 109 SCQLFG-QKLDRLRNHTAAQLINGFNFLR---WLESEPQDSHNEHVVINGQNFLMEITPV 164 + +FG +++L+ + +L+ ++ +R +L N + N + ++ + Sbjct: 244 ALDMFGSNSINKLKAYEMNELVENWDEIRNAIYLGESFSREVNIRTLRNNFRCNLMVSSI 303 Query: 165 YLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLA 224 Y +E+D V V + ++ R+ Q F +++ VVE A+K++ Sbjct: 304 YNCEEDDIEV----VYVFEEVKKIKRK---NHGQAYYTFDKVIGQDENFIKVVEYAKKIS 356 Query: 225 MLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA----- 279 + +LI G++GTGK++FA + H S R P++ALNC +IP+ +ESELFG+ Sbjct: 357 DSKSTILIMGESGTGKEVFAQSIHNYSSRVDGPFIALNCGAIPKQLIESELFGYEEGAFT 416 Query: 280 ---PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVI 336 G +G FE A+GG+++LDEIGEM MQ KLLR + +G ++G + VDVR+I Sbjct: 417 GAKKGGNRGKFELADGGTIMLDEIGEMPLDMQTKLLRVVQEGVITKIGSSKSIPVDVRII 476 Query: 337 CATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPR 396 AT ++L + V+ G FR+DLYYRLNVL L LPPLR+ DI + + + Sbjct: 477 AATNRDLKKEVELGRFRKDLYYRLNVLPLFLPPLRERKGDIPLIIRYLIKNISKRLEKKE 536 Query: 397 PKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATV--AVGE 454 P ++ + + Y WPGN+R+L+N + + + I + V Sbjct: 537 PSISEEWLKEINSYDWPGNIRELENVVE--------LIINTESIPSGYFQNGNCYNEVLI 588 Query: 455 DAMEGSLDEITSRFERSVLTQLYRNY-PSTRKLAKRLGVSHTAIANKLREYGLSQKK 510 + E SL E+ L ++ + + + + A+ LG+ + +K+++Y + K+ Sbjct: 589 NISEDSLK--LDFAEKEHLVKVLKKFKGNITRSAEALGIRRNTLYSKIKKYNIEIKQ 643 >UniRef50_A4IPD5 Transcriptional regulator n=6 Tax=Geobacillus RepID=A4IPD5_GEOTN Length = 464 Score = 466 bits (1201), Expect = e-130, Method: Composition-based stats. Identities = 129/458 (28%), Positives = 224/458 (48%), Gaps = 27/458 (5%) Query: 79 HLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFL--- 135 L L A+L++ + ++ D V A+P ++G+ + L + QL F Sbjct: 9 ELELDAILKSSTDNIVITDENGIVLRASPNCLSIYGKDVSYLVGKSVYQLEKENIFCPSV 68 Query: 136 --RWLESEPQDSHNEHVVINGQNFLMEITPVYLQDE------NDQHVLTGAVVMLRSTIR 187 R L + + + G+ + PV+ Q + H LT + + Sbjct: 69 TARVLREKKEVQLMQQTT-TGRVVMATGVPVFDQQNCIVRVISFSHDLTELERLKEDYEK 127 Query: 188 MGRQLQNVAAQ-DVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYA 246 + +Q+++ + + IV S M+ V + +++A A +L G++G GK++FA Sbjct: 128 LRKQMEHYQTEIEELKPQNIVIQSKAMERVWKLVRRVAQSDATVLFLGESGVGKNVFARF 187 Query: 247 CHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGFFEQANGGSVLLD 298 H +S R +P++ +NC++IPE ESE+FG+ GK G E A+ G++ LD Sbjct: 188 LHLSSSRRNEPFIEVNCSAIPESLFESEMFGYEKGSFTGAQKTGKPGLIELADQGTLFLD 247 Query: 299 EIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYY 358 EIGE+ MQAKLL+ L + RVG E VD R+I +T +NL E+V++G+FR+DL+Y Sbjct: 248 EIGELPLSMQAKLLKVLQEKKMIRVGGVKERTVDFRLIASTNRNLEEMVKQGIFRQDLFY 307 Query: 359 RLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQ 418 RL+V+ + +P LR+ +DI L + F+ + + + + L Y WPGNVR+ Sbjct: 308 RLHVIPIYVPSLRERKEDIFMLAQYFLEKCNQKYHMD-KYFHPSIVDHLVHYHWPGNVRE 366 Query: 419 LKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEG-----SLDEITSRFERSVL 473 L+N I R + + + P+ + + VA E +L E + ER L Sbjct: 367 LENMIERLVITSETKAIYPEYLPFSIQKHSKVAATPSLAEKRSEPSTLKEAVEQVERQWL 426 Query: 474 TQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKKN 511 + + +T ++A LG+S + KL+++ + K N Sbjct: 427 LRAAQQCKTTYEMADYLGISQPTVVRKLKKHRIDSKMN 464 >UniRef50_C6BZ70 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BZ70_DESAD Length = 458 Score = 466 bits (1201), Expect = e-130, Method: Composition-based stats. Identities = 136/453 (30%), Positives = 225/453 (49%), Gaps = 28/453 (6%) Query: 80 LALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQL----------I 129 L L +++ + + ++ V + N A ++ G D L N + L Sbjct: 8 LYLREVIDTMNDGLIIVSPDGIIMKVNDALLRMTGFSKDELLNKPCSVLGCDACRIVREQ 67 Query: 130 NGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMG 189 + ++ E + + N H++ N+L + L + D+ + GAV + + Sbjct: 68 SDGHWCGLFERKKESRKNCHIIGKNGNYLHVLKNASLLRD-DEDNILGAVETVTDISELD 126 Query: 190 R------QLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLF 243 R +L + + F V SP M+ V K A AP++I G++GTGK+L Sbjct: 127 RKELKIRELSRKLQHEENGFCGFVGHSPAMQKVYTLLGKAARSDAPVIIYGESGTGKELA 186 Query: 244 AYACHQASPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVL 296 A A H+ SPRA KP++ LNCA++ E +ESELFGH A ++G FE+A GS+ Sbjct: 187 AQAIHEMSPRADKPFVQLNCAALNESLLESELFGHVKGAFTGAYRHRQGRFEEAADGSIF 246 Query: 297 LDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDL 356 LDEIG++ +Q KLLR L +F RVGE+ + ++ R+I AT ++L +LVQ FRED Sbjct: 247 LDEIGDVPLPIQVKLLRVLETRSFERVGENINLSMEARLITATNQDLNQLVQDKQFREDF 306 Query: 357 YYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNV 416 ++R+NV+ ++LPPLR +D+ L + F++ P + L Y WPGNV Sbjct: 307 FFRINVIPVHLPPLRARKEDLPLLVDHFISVIDHLDHSEGP--TPETMRKLMEYQWPGNV 364 Query: 417 RQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQL 476 R+LK+A+ A D ++P+ LP + A +E + ++ ++ L Sbjct: 365 RELKSALEYAAVVKDSGPIQPEH--LPPQINSVTADCCPCIEPPVPAAEPDEKQELINAL 422 Query: 477 YRNYPSTRKLAKRLGVSHTAIANKLREYGLSQK 509 + + K AK LGVS I N++R++ + + Sbjct: 423 NQAGGNKSKAAKLLGVSRGTIHNRMRKHSVQYR 455 >UniRef50_B5WAL2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Burkholderia sp. H160 RepID=B5WAL2_9BURK Length = 595 Score = 466 bits (1201), Expect = e-130, Method: Composition-based stats. Identities = 139/462 (30%), Positives = 225/462 (48%), Gaps = 34/462 (7%) Query: 73 MPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGF 132 + ++ LS ++E+ + +++ D ++ + N A+ Q+F + + Sbjct: 142 LRLQKSEERLSRIIESATDAIVAFDSDGRITLFNRAAEQMFRCPANAAVGQACKAFFSPS 201 Query: 133 N---FLRWLESEPQDS------HNEHVVINGQNFLMEIT---------PVYLQDENDQHV 174 ++ + + + V +G++F +E + P+Y+ D Sbjct: 202 LYDLVGDFMRGNQRRAPIWLPDGHSAVRADGESFRIEASLSSAEACDQPIYILFIRDIEE 261 Query: 175 LTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITG 234 A V + + R LQ+ + + + +V ++ V++ +++A A +L+TG Sbjct: 262 RRKAEVEVGQLRGLNRYLQDELLEAEAG-ADLVGT-AGLQGVMQHVRQVAGTDASVLVTG 319 Query: 235 DTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE-------GKKGFF 287 +TGTGK+L A A H+ S R+GKP + LNCA +P + VESELFGH K G F Sbjct: 320 ETGTGKELIAQALHRMSARSGKPLVKLNCAVLPANLVESELFGHEKGAFTGALARKAGRF 379 Query: 288 EQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELV 347 E A+ G++ LDE+GE+ +QAKLLR L +G F R+G DVR+I AT +NL E Sbjct: 380 ELADEGTLFLDEVGELPLDLQAKLLRVLQNGEFERLGSIRTQKTDVRIIAATNRNLAEEA 439 Query: 348 QKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVL 407 G FR DLYYRLNV + LPPLR P+DI L E FV +A + G +A VL Sbjct: 440 ATGRFRADLYYRLNVFPIELPPLRARPEDIEQLVEHFVRHYAAKYGRHIDAVADAQLNVL 499 Query: 408 TRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSR 467 Y WPGNVR+L++ I RA+ G +L D A A+ +L++ Sbjct: 500 RAYRWPGNVRELQHVIERAVILTQGSQLALGDWFRDATPPACEAL-------TLEDAERA 552 Query: 468 FERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQK 509 VL Q A+RLG+ T + ++++ +++K Sbjct: 553 HILKVLEQTDWRVSGKAGAAERLGLPPTTLESRMKRLAITRK 594 >UniRef50_C0GEJ3 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GEJ3_9FIRM Length = 462 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 124/445 (27%), Positives = 211/445 (47%), Gaps = 26/445 (5%) Query: 83 SALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEP 142 +L +PEP+ VD + V N + + ++I + +E Sbjct: 23 EYILNVIPEPIALVDNEGYVVFFNKQYQEFLNISDEEAIGKHVTEIIENTRLHVVISTEK 82 Query: 143 QDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQ--------- 193 + + I G+ +++ PV++ + + + + + ++LQ Sbjct: 83 PEI-DYLQNIKGREAIVQRIPVFMDGKLLGAIGKISFRDVDEVKSLAKKLQVAENKAKKF 141 Query: 194 --NVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQAS 251 + F+ I+ VS + V A K+A + +LI G+TG GK+LFA+A H S Sbjct: 142 ENELRYTATYDFADILGVSQSITAVKRLAHKVAATNTNVLIQGETGVGKELFAHAIHNNS 201 Query: 252 PRAGKPYLALNCASIPEDAVESELFGH--------APEGKKGFFEQANGGSVLLDEIGEM 303 P++++NCA+IP+D +ESELFG+ GK G FE A+GG++ LDEIG+M Sbjct: 202 NSCNGPFVSINCAAIPQDLLESELFGYDEGAFTGARKNGKIGKFELADGGTIFLDEIGDM 261 Query: 304 SPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVL 363 MQ+KLLR L D F RVG VDVRVI AT N+ + V+ FR DL+YRLN + Sbjct: 262 PLGMQSKLLRVLQDRQFERVGGLTRQKVDVRVIAATNVNIEDKVRNNEFRADLFYRLNTI 321 Query: 364 TLNLPPLRDCPQDIMPLTELFVARFA-DEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNA 422 +L +PPLR+ +DI + + + E G + ++ LT Y WPGN+R+L N Sbjct: 322 SLIIPPLRERYEDISLIVDKSLKNLNSSEYG--NKRFSSQAMQTLTMYDWPGNIRELLNV 379 Query: 423 IYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFER-SVLTQLYRNYP 481 + R +D + + + + + +L++ E+ +++ L Sbjct: 380 VERLFFLVDSDLVEENHVK--QALSGINSEERKSNTNALEDQIHLTEKDAIINALESCNG 437 Query: 482 STRKLAKRLGVSHTAIANKLREYGL 506 + + AK LG+ T + K+++ + Sbjct: 438 NKAQAAKLLGIHRTTLYQKMKKLNM 462 >UniRef50_C6PWR5 Putative sigma54 specific transcriptional regulator n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PWR5_9CLOT Length = 635 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 135/478 (28%), Positives = 228/478 (47%), Gaps = 34/478 (7%) Query: 45 ELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDM 104 E E+ + E IA +VR + S R L +L+++ + V+ + +K+ + Sbjct: 171 ECGEEAIQQSLQEALHIA---EVRKIEAARSAR----LKVILDSITQGVIVTNEHNKIVL 223 Query: 105 ANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPV 164 NPA+ ++F ++ A + I LES + ING P+ Sbjct: 224 YNPAAEKIFDLSSKKVLGKDAFETIPNTRMHNVLESGEAEI-GVLQDINGGTIATNRIPI 282 Query: 165 YLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQ-------DVSAFSQIVAVSPKMKHVV 217 + + G V ++ + Q + + F I+ + M + Sbjct: 283 EVDGKR-----IGVVSTFEDITKIQQLEQKIRERIYKKGFVAKYFFEDILTANESMIELK 337 Query: 218 EQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFG 277 + A A A +LI G++GTGK+LFA + H AS R+ P++A+NCA+IP++ +ESELFG Sbjct: 338 KIADLYAKTDAEILIQGESGTGKELFAQSIHNASTRSNGPFVAVNCAAIPDNLLESELFG 397 Query: 278 HA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEV 329 + EGK+G FE A+ G++ LDEIGE+S +QA+LLR + + RVG D + Sbjct: 398 YEGGAFTGAKKEGKQGLFELAHNGTIFLDEIGEISKGLQARLLRVIQEKEIMRVGGDKVI 457 Query: 330 HVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFA 389 +D+R++ AT +NL + ++ G FR+DLYYRLNV + LPPLR+ +DI + + +FA Sbjct: 458 PIDIRIVSATNQNLEKQIETGEFRQDLYYRLNVFNIILPPLRERKEDISLIANKLLKKFA 517 Query: 390 DEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAAT 449 + + K+ ++N +L Y WPGN+R+ N I R + L Sbjct: 518 ENYDIDFNKVIKEINPLLIEYDWPGNIREFNNIIERLALVAVQTKSHNWAETLRKVMHTV 577 Query: 450 VAVGED-----AMEGSLDEITSRFERSVL-TQLYRNYPSTRKLAKRLGVSHTAIANKL 501 A+ E ++ L + FE+ ++ + L + K+ K L + K+ Sbjct: 578 EAMDEHIVVKVNLKNGLKDAVKEFEKYIINSMLLKYDQDKDKVIKELKIGRATFWRKI 635 >UniRef50_A1HSK4 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HSK4_9FIRM Length = 628 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 134/455 (29%), Positives = 220/455 (48%), Gaps = 32/455 (7%) Query: 69 TVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQL 128 T+ M E + ++ ++ +++VD V N + +L NH Sbjct: 185 TIQRME-EANARRIETIINSVDYGIIAVDNAGAVTALNREARRLLALAHGAPDNHPLL-- 241 Query: 129 INGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRS---- 184 R + + + + + +G+ ++ P+ + E GAV L+ Sbjct: 242 ---VKLRRHGQLGERLTGSVERLEDGRELVINYLPITIGGET-----AGAVATLQELRQF 293 Query: 185 ---TIRMGRQLQNVAAQDVSAFSQIV-AVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGK 240 R ++L F ++ +P M+ V+++A++ A + A +LI G+TG GK Sbjct: 294 QDIERRTRQELARRGRLARHTFLELEETAAPAMRAVIDEARRFAAVDATILIQGETGVGK 353 Query: 241 DLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANG 292 + FA+A H ASPR P++A+NCA+IP +ESELFG+A GK G FEQA+G Sbjct: 354 EYFAHAIHAASPRRYGPFVAVNCAAIPATVLESELFGYAEGAFTGAKKGGKVGLFEQAHG 413 Query: 293 GSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMF 352 G++ LDEIGEM+ +QA+LLR L + R+G+D + VD+RVI AT ++L +V G F Sbjct: 414 GTIFLDEIGEMAEELQARLLRVLQEHEIYRIGDDRVIPVDIRVIAATNRDLRAMVAAGRF 473 Query: 353 REDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAW 412 REDLYYRL+VL L +PPLR QDI F+ F + + + +L Y W Sbjct: 474 REDLYYRLDVLALEVPPLRARKQDIPLFVRKFIDEFNHKYRRAVQGIDDEGLALLAAYDW 533 Query: 413 PGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSV 472 PGNVR+L N + R + G + ++ + + + + R Sbjct: 534 PGNVRELHNVVDRLMALAAGPVITATEVR--QCLERRLRSSDRPAAPGMKAAEAAAIRDA 591 Query: 473 LTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 L + + ++ A+ LG+ + + KLRE G++ Sbjct: 592 LARA---NGNKQQAARLLGIGRSTLWRKLRELGIA 623 >UniRef50_A1VAP6 Sigma54 specific transcriptional regulator, Fis family n=7 Tax=Bacteria RepID=A1VAP6_DESVV Length = 473 Score = 465 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 148/462 (32%), Positives = 220/462 (47%), Gaps = 31/462 (6%) Query: 81 ALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNF-----L 135 + ++ + L + + + N QL G LR L+ F Sbjct: 7 HIESIFDILSDGIYITQRDGTTLLVNRMYEQLTGLSFKDLRGRNVHDLVADGIFDTILNP 66 Query: 136 RWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGA-----VVMLRSTIRMGR 190 + ++ +HV + ++ PV+ + V+T A + R I + Sbjct: 67 EVVRTKRPAVSVQHVR-QSKKIILRGYPVFDEHGEVCLVVTFARDITMITQFREQIAQQK 125 Query: 191 QLQNVAAQDVSAF-------SQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLF 243 QL + + SQ V S M+ V++ Q++A A +LI G+TG GKD+F Sbjct: 126 QLIETFSDRIECMLHEQVRNSQPVFESEVMQQVLDLLQRVAATDANILILGETGVGKDVF 185 Query: 244 AYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGFFEQANGGSV 295 A H+ SPR+ K +L ++C SI E+ +ESELFG+ P GK G+FE A+GG+V Sbjct: 186 ARLAHEYSPRSSKMFLKVDCGSIAENLIESELFGYVPGAFSGASSKGKAGYFEIADGGTV 245 Query: 296 LLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFRED 355 LDEIGE+ MQAKLLR L D RVG VDVR+I AT ++L E + G FR D Sbjct: 246 FLDEIGELPLPMQAKLLRVLQDREVMRVGSSQARKVDVRIIAATNRDLAEDAKAGKFRSD 305 Query: 356 LYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGN 415 LYYRLNV L+LPPLR+ QDI+PL E F+ RF + L L Y WPGN Sbjct: 306 LYYRLNVAVLDLPPLRERQQDIIPLVERFLDRFNAKYRRNM-TLPKGTRQALQNYKWPGN 364 Query: 416 VRQLKNAIYRALTQLDGYELRPQDILL----PDYDAATVAVGEDAMEGSLDEITSRFERS 471 VR+++N I + +G+ ++P+ + + L EI + ER Sbjct: 365 VREMQNLIQSLVVTCEGHSIKPEHLPPHIQKAARNRTAYTPPAPDDARPLKEIMADIERE 424 Query: 472 VLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKKNEE 513 +L + R + S K+A+ +S T + KLR L+ +E Sbjct: 425 ILEEAVRTHGSVCKVARMYKISRTTLFRKLRGSSLAGVSGDE 466 >UniRef50_C8QHJ7 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Enterobacteriaceae RepID=C8QHJ7_9ENTR Length = 652 Score = 465 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 132/443 (29%), Positives = 212/443 (47%), Gaps = 25/443 (5%) Query: 71 PWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLIN 130 + R ++LE L E V+ D ++ N + Q+F Sbjct: 215 QQLMLRRLLAEQQSILETLNEGVIVCDRHGRIKTLNRYARQIFSGLDPDAGTIDVLLQPQ 274 Query: 131 GFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGR 190 G + L ++ + L+ + P G V+ LR R+ Sbjct: 275 GASLLTMPFCNDRELQFMPDGVQSIPCLISLMPAPDG---------GRVLSLRENQRIRA 325 Query: 191 QLQNVAA-QDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQ 249 + V F I +P+++ +++A+ + + +L+TG++GTGK+LFA A H Sbjct: 326 ITRRVMGVSASYTFDMIRGHAPRVQQAIQKARASSRTDSTVLLTGESGTGKELFAQAIHN 385 Query: 250 ASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGFFEQANGGSVLLDEIG 301 ASPR + ++ALNC ++P D V+SELFG+ G G FE A+GG++ LDEIG Sbjct: 386 ASPRQQEAFIALNCGALPRDLVQSELFGYVDGAFTGSRRGGSPGKFELADGGTLFLDEIG 445 Query: 302 EMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLN 361 EM Q LLR L + R+G + + V+VR+I AT NL++ V+KG FR DLYYRLN Sbjct: 446 EMPLEAQTSLLRVLQESEVVRIGAANPLKVNVRIIAATHCNLLDAVEKGAFRRDLYYRLN 505 Query: 362 VLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKN 421 V++L +PPLR+ +DI L F+ P+++ + L + WPGNVR+L+N Sbjct: 506 VVSLAIPPLRERQEDIPGLVNTFILALCARLKRIAPQVSPEAMRCLQAWHWPGNVRELEN 565 Query: 422 AIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYP 481 + R + +G E+ QD+ V L + + VL + + Sbjct: 566 LVERMVNLCEGLEIDRQDL-------PDDMVQRQQPPVQLPSLQENERQHVLQVVAEQHG 618 Query: 482 STRKLAKRLGVSHTAIANKLREY 504 + R+ A+ LG+S TA+ NKL ++ Sbjct: 619 NLRQSAQLLGISRTALYNKLNQW 641 >UniRef50_C1MAF5 Signal-transduction and transcriptional-control protein n=5 Tax=Enterobacteriaceae RepID=C1MAF5_9ENTR Length = 582 Score = 465 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 129/473 (27%), Positives = 227/473 (47%), Gaps = 31/473 (6%) Query: 49 ESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPA 108 + F + + +I + + + ++ A L++A+ V+++D K + AN + Sbjct: 126 DKFVTFIEQIAVMISSKVFECLERLRAQETLGAFRRLIDAMDRGVVAIDGKGLIWHANHS 185 Query: 109 SCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEH-VVINGQNFLMEITPVYLQ 167 + ++ ++ + G + E + + GQ + + L Sbjct: 186 ADRILNRE------------VQGLPLTIETTGDSLYGDEEAWLTLEGQKHHVLCKQISLS 233 Query: 168 DENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLS 227 +++ + +++ R L + + +++ SP M+ + K+A Sbjct: 234 SQDNDRL---TMIIFRDAHDYLSNL-TPSPYESDMQVRLIGHSPSMEQLRSTIGKIANSY 289 Query: 228 APLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA-------- 279 A +LITG++G+GK++ A+A HQ+SPR P++ +NCA+IPE +ESELFG+ Sbjct: 290 ASVLITGESGSGKEVVAFAIHQSSPRKAAPFVTINCAAIPEQLLESELFGYVRGAFSGAD 349 Query: 280 PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICAT 339 P+G+ G FE ANGGS+ LDEIG+M +QAKLLR L + RVG ++ +++DVR+I AT Sbjct: 350 PKGRMGKFELANGGSLFLDEIGDMPLHLQAKLLRVLQEKAITRVGSNNTINIDVRIIAAT 409 Query: 340 QKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKL 399 KN+ +V+ FREDL+YRLNV+ L LP LR+ DI L + F F+ P KL Sbjct: 410 NKNINAMVENNQFREDLFYRLNVVPLVLPSLRERRADIAVLAQYFADEFSVSYQRPPQKL 469 Query: 400 AADLNTVLTRYAWPGNVRQLKNAIYRALTQ-LDGYELRPQDILL-----PDYDAATVAVG 453 D+ L + WPGN+R+L+N I + + + D T+ Sbjct: 470 PDDVINRLYAWHWPGNIRELRNVIEYIFVMRGEAAGINASHLPPYLLTAADGRKTTMTAQ 529 Query: 454 EDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 + + +V+ + + ++ A LG+S + K++ YGL Sbjct: 530 PRQLASKGKQAEREAIENVIQRFGSSVEGKKQAATELGISIATLYRKIKLYGL 582 >UniRef50_A5GDL0 Sigma-54 specific transcriptional regulator, Fis family n=4 Tax=Geobacter RepID=A5GDL0_GEOUR Length = 591 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 141/459 (30%), Positives = 225/459 (49%), Gaps = 39/459 (8%) Query: 81 ALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNF-----L 135 L A++ + + + D ++ V NPAS ++ K + + H L+ F L Sbjct: 140 ELGAIINSSSDGLWICDSQANVLRINPASERINHIKAEDVVGHNMRDLVAEGVFDKSATL 199 Query: 136 RWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIR---MGRQL 192 L + + + G+ ++ TPV+ + L VV R + R+L Sbjct: 200 EVLRTGNVANMLQQ--REGRKLILTGTPVF----DTAGRLIRVVVSERDITEIDILQREL 253 Query: 193 QNVAAQDVSAFSQIV-------------AVSPKMKHVVEQAQKLAMLSAPLLITGDTGTG 239 + A ++ A SP M + QA K++ + + +LI G++G G Sbjct: 254 EEQEAMKDQFRHHMIEKQQVELESHRVIARSPVMLKALHQAIKVSTVDSSVLILGESGVG 313 Query: 240 KDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGFFEQAN 291 K L A H+ S RA KP + +NC +IPE +ESELFG+ GK G+FE A+ Sbjct: 314 KGLIADLIHKNSLRAKKPLIKINCGAIPESLIESELFGYEKGAFTGAQAGGKPGYFELAD 373 Query: 292 GGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGM 351 GG++ LDEI E+ Q KLLRFL DG R+G + VDVR++ AT +NL E+V +G Sbjct: 374 GGTLFLDEIAELPLSSQVKLLRFLEDGRITRLGGTNGRTVDVRILAATHRNLEEMVSQGK 433 Query: 352 FREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYA 411 FR DLYYRL V+ + +P +R+ I+PL ++ F + G+ +L + +L Y Sbjct: 434 FRLDLYYRLKVIPIYVPSVRERKDCILPLIHHYIDFFGTKTGIK-KRLTRAASDILMSYP 492 Query: 412 WPGNVRQLKNAIYRALTQLDGYELRPQDIL---LPDYDAATVAVGEDAMEGSLDEITSRF 468 +PGNVR+L N R + + + +D+ + + A E SL + Sbjct: 493 YPGNVRELMNICERLVVMSEMELIDLKDLPGDIVARVEETGKASMAWPEEMSLQQAIDSV 552 Query: 469 ERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 ER+VL Q Y + ++A+ LGV+ + IA KL++YGL+ Sbjct: 553 ERNVLAQAVERYGNQCRMAEVLGVNQSTIARKLKKYGLT 591 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 53/132 (40%), Gaps = 14/132 (10%) Query: 83 SALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEP 142 AL+ A+ VL+V+ +AN ++ + FG ++ + + ++ Sbjct: 27 QALVNAMGVGVLAVNTSGMTILANKSARENFG----AYPGIHLNDVLPEL-WPKVVQRLR 81 Query: 143 QDSHNEHVVINGQ--NFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVA--AQ 198 + +H+ V + G N+L+ ++P+ L E GAV + + + + + Sbjct: 82 KHTHSIEVSVRGGEANYLVRVSPILLDKEQ-----VGAVCVFVESTGLEEMAMQMQTFQE 136 Query: 199 DVSAFSQIVAVS 210 S I+ S Sbjct: 137 LTSELGAIINSS 148 >UniRef50_Q24ZH2 Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense Y51 RepID=Q24ZH2_DESHY Length = 659 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 137/476 (28%), Positives = 226/476 (47%), Gaps = 17/476 (3%) Query: 45 ELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDM 104 ++ S + + I ++ + L A L + ++++D + Sbjct: 187 NMQAHSLGWITSMAYAIENQLKLKQAN-EELSLSNGTLEATLAVVEGGLITLDKRGMTAH 245 Query: 105 ANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVING---QNFLMEI 161 N C++ G + + + L+ S++E ++ NG + ++M I Sbjct: 246 INNEGCRILGITQEETLGEHFTKYLQNDKITGILKDGKAVSNHEIIIDNGETEKQYVMSI 305 Query: 162 TPVYLQDE-NDQHVLTGAVVMLRSTIRMGRQLQN-VAAQDVSAFSQIVAVSPKMKHVVEQ 219 P+ QD N L G V+ L + + + + A +F I P +V Sbjct: 306 YPIVPQDTCNINDKLNGIVIHLSRIENIKKLVNDWRGASATYSFEDIQGKDPLFLKIVGI 365 Query: 220 AQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA 279 A++ + L A +LI G++GTGK+LFA A H AS P++++NC+++P + +ESELFG+ Sbjct: 366 ARQYSKLYANVLIHGESGTGKELFAQAIHNASC-PEGPFISINCSAMPRNLIESELFGYE 424 Query: 280 --------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHV 331 +G+ G E AN G++ LDEIG+M +Q LLR L + RVG + V Sbjct: 425 GGAFTGAERKGRPGLIELANEGTLFLDEIGDMPLEIQPVLLRVLEEKKVMRVGGKKYIPV 484 Query: 332 DVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADE 391 RVI A+ KNL +VQ+ FREDLYYRL V L +PPLR P DI+ L + F+ + + Sbjct: 485 SFRVISASNKNLNIMVQEKTFREDLYYRLAVFKLQIPPLRKRPDDIISLAQFFIKGTSQK 544 Query: 392 QGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVA 451 G P L+ V+ YAWPGNVRQL+N++ A++ G + +D LPD + Sbjct: 545 VGRKMPVLSKAAQKVIKEYAWPGNVRQLENSMVYAVSLTQGDVIGAED--LPDDITNPIT 602 Query: 452 VGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 + S+ + ++ L + + A LG+ + + KL+EY L Sbjct: 603 PENSRLFSSVMSLREMEITAIKNALEQTNQNIANAANILGLGKSTLYKKLKEYHLE 658 >UniRef50_B8G0V4 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8G0V4_DESHD Length = 657 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 135/450 (30%), Positives = 228/450 (50%), Gaps = 23/450 (5%) Query: 73 MPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGF 132 + S+ + + L EA E V+ +D K+ AN + + L++ +++ Sbjct: 214 LESDLKSELFNQLSEARNEAVIFIDSFGKIVDANQKFSKWVNVEKAELKDKELTEVLPEM 273 Query: 133 -NFLRWLESEPQDSHNE----HVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIR 187 L LE+ + E + + Q M++ P+ +TG +++L Sbjct: 274 QRILSCLETGKTITSEEIQLSKLPPHMQFVQMDVKPI-----ESDKKITGLIIILMDNKT 328 Query: 188 MGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYAC 247 +++ ++ Q F QI+ S ++ ++A A S+ ++++G++GTGK+LFA A Sbjct: 329 FRQRMSKISNQAYYTFDQIIGESGALQEAKQRAMNAACSSSNVILSGESGTGKELFAQAI 388 Query: 248 HQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDE 299 H+ASPR P++++NCA+IP + + SELFG+ G G FE AN G++ LDE Sbjct: 389 HKASPRREGPFVSINCAAIPTELIASELFGYVEGAFTGARKGGSMGKFEYANTGTIFLDE 448 Query: 300 IGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYR 359 IGEM +Q LLR L + R+G + VDVR+ICAT +NL ++V+ G FR DLYYR Sbjct: 449 IGEMPLHIQTILLRVLEERRVNRIGSNIATPVDVRLICATNRNLHKMVKDGSFRLDLYYR 508 Query: 360 LNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQL 419 +NVL ++LPPLR+ DI + + ++ F ++A + L ++W GN+R+L Sbjct: 509 INVLHIHLPPLRERITDIPIIVDYYLDYFNRFLDKKVREVAPETMAFLINHSWEGNLREL 568 Query: 420 KNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSL-DEITSRFE--RSVLTQL 476 +N I + G L + LP Y D EGSL E FE + +L + Sbjct: 569 RNTIECGINNAMGKTLELEH--LPRYFFEKEEKMFDDREGSLGHESVYEFEEKKKMLALM 626 Query: 477 YRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 + + +A+ +G+S + + KL+ Y L Sbjct: 627 IKFNGNKSAVAEEIGISRSTLYRKLKSYNL 656 >UniRef50_D2LAE8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2LAE8_9DELT Length = 477 Score = 464 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 141/473 (29%), Positives = 219/473 (46%), Gaps = 51/473 (10%) Query: 80 LALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQL-----INGFNF 134 L A+L+++ + V + N A QL G L +L N Sbjct: 3 RHLDAILDSIEDGVFIANRDGYALKVNAAYEQLTGMSKAELIGKNVEELKKAGLFNLAPI 62 Query: 135 LRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGA-----VVMLRSTIRMG 189 + + + + + V + ++ ++ PV D V+ A + +R I Sbjct: 63 TPEIVATGRPASSIQVTRDNRSMTIDGKPVRDPDGTVSLVVLYARDITLMARMRERISRQ 122 Query: 190 RQLQNVAAQDVSAF-------SQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDL 242 ++L + F + +A + MK +++ +++A A L+ G+TG GK+L Sbjct: 123 QELIETYQHQMDFFIREGGGITNFIAENSAMKRLMDLLRRVAATDAVALVLGETGVGKEL 182 Query: 243 FAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGFFEQANGGS 294 FA H+ASPR KP++ ++CASIPE+ +ESELFG+AP G+ GFFE A GG+ Sbjct: 183 FARMIHEASPRREKPFVKVDCASIPENLIESELFGYAPGAFTGAHPKGRVGFFEMAEGGT 242 Query: 295 VLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFRE 354 + LDEIGEM +Q+KLLR L D VG DVRVI AT +NL + G FR Sbjct: 243 IFLDEIGEMPLLLQSKLLRVLQDRELTPVGSSRARKTDVRVIAATNRNLEAEARVGTFRS 302 Query: 355 DLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPG 414 DL++RL V L +PPLRD P DI+PL LF+ RF + ++ VL Y WPG Sbjct: 303 DLFFRLRVAVLEIPPLRDRPDDILPLARLFLQRFGARYRKRA-AFSLEVERVLAHYNWPG 361 Query: 415 NVRQLKNAIYRALTQLDGYELRPQDILLP------------------------DYDAATV 450 NVR+L+N I + DG E+ D+ AA+ Sbjct: 362 NVRELENLIEGLVITCDG-EIAADDLPTAMRVKECPLPAAAMGGPGGAMATGGPSPAASC 420 Query: 451 AVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLRE 503 + ++ + FE L + ++ + + A+RLG+ T I K+++ Sbjct: 421 PDATPDWDRPYKDVLAAFEHDYLERAIAHFGTVGEAARRLGLDRTTIFRKMKK 473 >UniRef50_B8D1H9 Putative PAS/PAC sensor protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1H9_HALOH Length = 877 Score = 464 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 129/467 (27%), Positives = 225/467 (48%), Gaps = 40/467 (8%) Query: 66 DVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTA 125 +++ + + E + L+ + ++ V +++ N + + G K L Sbjct: 420 ELKEIQILNKE-----MDTLINFSCDGLVMVSKDGRIERVNHSYLNMVGFKRQDLIGKRV 474 Query: 126 AQLINGFNFLRWLES----EPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVM 181 +L + S E ++ + + L PV+ N+ L VV Sbjct: 475 EELEKERYIYPSVASLALKEKRNITLVENTSDKKRLLATANPVF----NENGDLEWVVVN 530 Query: 182 LRSTIRMGRQLQNVAAQDVSAFSQ--------------IVAVSPKMKHVVEQAQKLAMLS 227 +R+ + + + I+ S +MK+++ +K+A Sbjct: 531 VRNLDLINDEKDKEKEKLKKYLDNAPQLDNNPEGNTGHIIVSSDEMKNILMTCRKIAGTD 590 Query: 228 APLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE------ 281 + +LITG++G GK++ A H+ SP + ++ +NCA+IPE +ESELFG+ Sbjct: 591 STVLITGESGVGKEVVARYIHEQSPGRQE-FVKINCAAIPESLLESELFGYETGAFSGAK 649 Query: 282 --GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICAT 339 GK G E+A+ G++ LDEIGEM MQAKLL+ L + R+G V +D R+I AT Sbjct: 650 RAGKPGLIEKADRGTLFLDEIGEMPLNMQAKLLQVLQERKLTRIGGVKPVKIDFRLIAAT 709 Query: 340 QKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKL 399 ++L ++V++ FR+DL+YRLNV+ L +PPLR P+DI+ L + F+ ++ ++ L Sbjct: 710 NRDLRQMVRQKYFRQDLFYRLNVVPLYIPPLRKRPEDILSLIKYFLDQYCEKYNKQIK-L 768 Query: 400 AADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEG 459 D +L Y+WPGNVR+L N I R + + + ++I++ D V E + Sbjct: 769 TRDAEELLLSYSWPGNVRELTNLIERLVVTCEESFVD-RNIIIEYIDNPEVKTPEILINK 827 Query: 460 --SLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREY 504 L E +R E+ +L+ ST +AK LGV+ + + KL +Y Sbjct: 828 IMPLPEAVARVEKKLLSMARSKGNSTYDMAKLLGVNQSTVVRKLHKY 874 >UniRef50_Q5WL87 Transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WL87_BACSK Length = 569 Score = 464 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 150/453 (33%), Positives = 215/453 (47%), Gaps = 39/453 (8%) Query: 77 REHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLD-RLRNHTAAQLINGFNFL 135 + L A+LE E ++ VD + K+ N A G K + + A +I Sbjct: 126 EQKAILEAILENAYEGIVIVDKQGKIVKMNNAYRSFIGGKDEAEVEGKFVADVIENTRLH 185 Query: 136 RWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAV--VMLRSTIRMGRQLQ 193 ++S + E I GQN ++ P++ H + GAV ++ + LQ Sbjct: 186 EVVKSGIPE-RGEIQRIEGQNMVVHRIPIW-----QNHRVVGAVGMLIFEGVSELYEILQ 239 Query: 194 NV--------------AAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTG 239 S +++ S ++ A+K+A A +L+TG+TGTG Sbjct: 240 RARVFLSEESLSTEPTKKNATSVERRLIGRSEALQSCKCFARKVARTKATVLLTGETGTG 299 Query: 240 KDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGFFEQAN 291 K+LFA HQ S +A P++A+NCA++PE +E+ELFG+ G G FEQA+ Sbjct: 300 KELFARLIHQMSNQANGPFVAINCAAMPETLLEAELFGYEEGAFTGARRGGAVGKFEQAS 359 Query: 292 GGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGM 351 GG++ LDE GEMS +QAKLLR L RVG V D R+I AT +L +LV G Sbjct: 360 GGTLFLDEAGEMSNALQAKLLRVLETKQVDRVGSCRPVQTDFRLIAATNADLNQLVADGK 419 Query: 352 FREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYA 411 FR+DLYYRL +TLN+PPLR+ +DI L F+ RFA E G+ + D Y Sbjct: 420 FRKDLYYRLVAITLNIPPLRERKEDIPYLISAFMDRFAQEYGLRHKRFCEDALHAFLEYD 479 Query: 412 WPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERS 471 WPGNVR+L NAI G E + LP + A E SL + R E+ Sbjct: 480 WPGNVRELANAIDY--IMAIGEEEKVTSNTLPPFLRNHAAKKE-----SLKTVARRSEKE 532 Query: 472 VLTQLY-RNYPSTRKLAKRLGVSHTAIANKLRE 503 + Q + K AK LG+ + KL+E Sbjct: 533 RIEQAIVLANGNKAKAAKLLGIHRATLYRKLKE 565 >UniRef50_A6LV86 Sigma54 specific transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=A6LV86_CLOB8 Length = 590 Score = 464 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 121/455 (26%), Positives = 211/455 (46%), Gaps = 35/455 (7%) Query: 80 LALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLR--- 136 L +++E + + D ++ N A + G K + L + Sbjct: 136 TELDSIIECSYDGIYITDGEANTIKINNAYESITGLKRAEVLGRNMKDLEKEGVISQSAT 195 Query: 137 -WLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNV 195 + + + + G L+ P++ ++ + V +R ++ + + Sbjct: 196 LLVLKNRKTTTIQQEFKTGVKVLVSSNPIFDKNGK----IIMVVTNVRDVTQLYELKEQL 251 Query: 196 AAQDVSAF----------------SQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTG 239 S+IVA K +++ A ++A + +L+ G+TG G Sbjct: 252 QKNKEITLKYVSEIEEMRTQLLNTSEIVAEDHKTIEIIQLANRIAKVDTTILMLGETGAG 311 Query: 240 KDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAP--------EGKKGFFEQAN 291 KD A H+ S R+ K ++ +NC ++P +ESE FG+ EGK G FE A+ Sbjct: 312 KDQIAKYIHKVSKRSKKQFIKVNCGAVPASLIESEFFGYEKGAFTGANKEGKIGLFEMAS 371 Query: 292 GGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGM 351 GG++ LDE+GE+ MQ KLLR L + R+G + +DVRV+ AT ++L ++++K Sbjct: 372 GGTIFLDEVGELPMDMQVKLLRVLQEMEVVRIGGTKPIKIDVRVLAATNRDLEDMIKKKQ 431 Query: 352 FREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYA 411 FREDLYYRLNV+ L +PPLR+ DI+PL F+ + + A+D + Y Sbjct: 432 FREDLYYRLNVIPLYIPPLRERKHDILPLINFFLTQLNKKYNFN-KIFASDALNCMYEYN 490 Query: 412 WPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEG--SLDEITSRFE 469 WPGNVR+LKN + RA+ + +++ D+ + + V + E +L E E Sbjct: 491 WPGNVRELKNIVERAVIMSEDDKIKRSDLPKNIIGSNGMIVTLNTFEEGINLKETLDAIE 550 Query: 470 RSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREY 504 + ++ + Y Y + R AK LG+ + K ++Y Sbjct: 551 KKLIKKAYDKYGNVRAAAKSLGIDASTFVRKRQKY 585 >UniRef50_Q1K2I9 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K2I9_DESAC Length = 717 Score = 464 bits (1195), Expect = e-129, Method: Composition-based stats. Identities = 128/447 (28%), Positives = 226/447 (50%), Gaps = 22/447 (4%) Query: 79 HLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWL 138 H +L+A + E +++VD K K+ N + ++F + + N + ++ + + Sbjct: 273 HESLTASFAFIDEGMIAVDNKGKIRQINNEAMRIFRAHPEEIGNRNLNEFLSAESSIMHR 332 Query: 139 ESEPQDSHNEHVVINGQN----FLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQN 194 ++ + + V G N + + + P+ Q V+ ++ L S ++ N Sbjct: 333 ANKGESFTVDECVKVGTNKARPYRISVRPILNQYTKKLDVV---ILKLISCEKLNNAQSN 389 Query: 195 VAAQ-DVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPR 253 + + I+ S +K + QA + A +L+ G++GTGK+LFA++ H R Sbjct: 390 RSGRSATYQIEDILGESVAIKSTIAQASRFAASPENILLIGESGTGKELFAHSIHNI-YR 448 Query: 254 AGKPYLALNCASIPEDAVESELFGHAPE--------GKKGFFEQANGGSVLLDEIGEMSP 305 P++A+NCA++P + V SELFG+ GK G E A+GG++ LDEIG+M Sbjct: 449 PNGPFMAVNCAALPRELVGSELFGYEGGSFTGAERCGKPGKIELADGGTLFLDEIGDMPL 508 Query: 306 RMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTL 365 QA LLR L D R+G + VD R++ AT K+L ++V++ FREDLYYR++VL + Sbjct: 509 EHQAILLRSLQDKRVMRIGGNRYKEVDFRLVAATNKDLQQMVEEKTFREDLYYRISVLGI 568 Query: 366 NLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYR 425 +PPLR+ +DI L+ LF+ + G P+L+ + V+ +Y WPGNVRQL+NAI+ Sbjct: 569 FIPPLRERGKDISLLSRLFIRNYCQRMGWQEPQLSPEAEKVINQYKWPGNVRQLQNAIHH 628 Query: 426 ALTQLDGYELRPQDILL----PDYDAATVAVGEDAMEGSLDEITSRFERSVLT-QLYRNY 480 A+ + + P ++ ++ + A G + E+ + L R Sbjct: 629 AINTANDNVIEPSNLPGYVLDDTTSPSSTGLPRFAGAGDHNLCIKTIEKEAIEAALLRAN 688 Query: 481 PSTRKLAKRLGVSHTAIANKLREYGLS 507 A+ +G+S + + KL++Y +S Sbjct: 689 NCIPTAAEIVGLSRSTLYRKLKDYNIS 715 >UniRef50_A6TL57 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TL57_ALKMQ Length = 580 Score = 464 bits (1195), Expect = e-129, Method: Composition-based stats. Identities = 130/464 (28%), Positives = 211/464 (45%), Gaps = 42/464 (9%) Query: 82 LSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESE 141 + ++ + VL D S V N A L G + + + G + + Sbjct: 122 FDYFINSISDAVLICDHDSIVKKINKAYTHLTGVSPNGIEGKKVNSVRKGAQISHAVNTG 181 Query: 142 PQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAA---- 197 + + + +++ PV + + + G VV+ + + + V Sbjct: 182 VAMKNIYRQE-GDREYFVDLYPVSVGGK-----ILGGVVLAKDITEIQHLTKKVNQWKTQ 235 Query: 198 ------------QDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAY 245 + F I+A SP MK + +K+A +LI G++GTGKD+F+ Sbjct: 236 FSKLKSSVASHHKAAKTFDDIIAKSPAMKSCITLGKKVANSDTNILIRGESGTGKDIFSQ 295 Query: 246 ACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLL 297 A H S R P++A+NCASI + SELFG+ GK G FE AN G++ L Sbjct: 296 AIHNYSYRKNHPFVAINCASISPTLILSELFGYEDGAFTGASKGGKIGLFELANKGTLFL 355 Query: 298 DEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLY 357 DEIG+M +Q+KLLR L +G RVG + V+VRVI AT +L E ++K FR DLY Sbjct: 356 DEIGDMDLDLQSKLLRALENGAITRVGGSTTIKVNVRVIAATNVDLEEKIRKNEFRSDLY 415 Query: 358 YRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVR 417 +RLN++ + LPPLRD ++I L E + + + + T L Y WPGN+R Sbjct: 416 FRLNIIPIRLPPLRDRKEEIPYLVEALLVGLSASLHKRLI-ITPETVTSLKHYHWPGNIR 474 Query: 418 QLKNAIYRALTQLDGYELRPQDIL-------LPDYDAATVAVGEDAMEGSLDEITSRFER 470 +L+N + A T +D + + L + L E S E+ Sbjct: 475 ELQNVLVFAATMIDEDVITIDCLPKKIKERILDHAVPPQPPHEPRSFITPLRESQSELEK 534 Query: 471 SVLTQLYRNYP----STRKLAKRLGVSHTAIANKLREYGLSQKK 510 +++ Y +K+A+ LG+S + NK+ +YG+++K+ Sbjct: 535 DKISKGLLEYGATVQGKKKVAQLLGISLATLYNKINQYGINKKR 578 >UniRef50_Q1JY50 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JY50_DESAC Length = 455 Score = 464 bits (1195), Expect = e-129, Method: Composition-based stats. Identities = 133/445 (29%), Positives = 225/445 (50%), Gaps = 24/445 (5%) Query: 83 SALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGF------NFLR 136 +++E + E V+ +D + + NPA+ ++ K +R+ + L G + Sbjct: 10 QSIVEEMTEGVVFLDADDVICICNPAAERIRRVKAERIIGRSIYSLHPGRMHDRIRQLIE 69 Query: 137 WLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQN-- 194 L+S S + + + F T + D G +++ R R + Sbjct: 70 SLKSGRISSGSRIIHAQKRFFSNSYTAIKAPD----GTYLGTLLISRDVTEEKRLREENE 125 Query: 195 --VAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASP 252 + Q +V S V++ A L + + +L+TG+ GTGK+ HQ SP Sbjct: 126 SLRSRQSDEKMKCLVVHSDAALRVMDMAVSLGQIDSTVLVTGENGTGKECVVELLHQNSP 185 Query: 253 RAGKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSP 305 R P + +NCA++P++ +ESELFG A E +KG FE ANGG++ LDE+G++ Sbjct: 186 RRNGPLVKVNCAALPDNLIESELFGFVKGAFTGATENRKGKFELANGGTLFLDEVGDLPL 245 Query: 306 RMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTL 365 QAKLLR L + + +G EV +DVR++ AT L + V G FREDL+YRLNV+ + Sbjct: 246 ASQAKLLRVLQERKVQPLGGKSEVLIDVRIVAATNHILSDDVAGGKFREDLFYRLNVIHI 305 Query: 366 NLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYR 425 ++PPLR+ +DI PL E+F+ +F+ + P L+ + +L + +PGN+RQL++A+ R Sbjct: 306 DVPPLRERREDIEPLAEMFLDKFSTQMNKPVRHLSTEALNILLHHHFPGNIRQLEHAMER 365 Query: 426 ALTQLDGYELRPQDILLPDYDAATVAVGEDAMEG--SLDEITSRFERSVLTQLYRNYP-S 482 A+ G + P D+ A+ V + ++G +L E FER + + Sbjct: 366 AVALSSGELILPDDLPQDLLSASVVTTAQHTIQGGLALKEAVDFFERDYIAAALKQCDYK 425 Query: 483 TRKLAKRLGVSHTAIANKLREYGLS 507 K A+ LG+S ++ K++ Y L+ Sbjct: 426 KSKTAEHLGISRKSLWEKIQRYNLT 450 >UniRef50_C0QEM3 Sigma-54 dependent transcriptional regulator (PAS domain protein) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QEM3_DESAH Length = 575 Score = 464 bits (1194), Expect = e-129, Method: Composition-based stats. Identities = 130/450 (28%), Positives = 217/450 (48%), Gaps = 22/450 (4%) Query: 78 EHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLI--NGFNFL 135 E +L +L++L + +V+ + N A+ ++ G L L G Sbjct: 129 EEQSLKIILDSLNMGIFTVNRGGLITFFNRAAEKVSGFSRMNLLGKACGTLFAGEGKQVC 188 Query: 136 RWLESEPQDSHNEHVVINGQ--NFLMEITPV---YLQDENDQHVLTGAVVMLRSTIRMGR 190 + L+ D + G+ +F E+ P+ Y+ ND + GA+ + + + Sbjct: 189 QALKQVLAD-RIPATAVRGELLSFQGEVIPISGDYIPLLNDHGGVIGALAAFQDMTLVQQ 247 Query: 191 QLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQA 250 Q + Q F ++ P M+ + + + +A + LLI G TGTGKDL A H Sbjct: 248 LNQAIKGQ--YHFHHMIGKDPAMQRIFDMVRVVAKTESTLLIEGATGTGKDLLAKIIHSE 305 Query: 251 SPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEM 303 S R+ +P++ +NCA+IP++ VESE+FG+ A K G F +A+ G++ LDEIG++ Sbjct: 306 SNRSKRPFVKVNCAAIPDNLVESEIFGYVRGAFTGADRDKPGRFSEAHSGTIFLDEIGDL 365 Query: 304 SPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVL 363 +QAKLLR L D F +G VDVR++ AT + L LV + +FREDL+YRLNVL Sbjct: 366 PLALQAKLLRVLEDREFYPLGSRKTQRVDVRILSATNRKLESLVAQKLFREDLFYRLNVL 425 Query: 364 TLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAI 423 ++LPPL + D+ L + + A P P + +L Y +PGN+R+L+N I Sbjct: 426 RIDLPPLMNRRGDLPLLIRHLMRKQAGIMKKPFPDICETAMEILLNYHYPGNIRELENII 485 Query: 424 YRALTQLDGYELRPQDILLPDYDAATVAVGEDAM--EGSLD---EITSRFERSVLTQLYR 478 A+ +R + D + + D ++D T++ + +L L Sbjct: 486 EHAIILCQEEVIRSCHLPAYILDCSGLEGKRDGFSDPSTVDPGFSGTAQERQQILDVLRA 545 Query: 479 NYPSTRKLAKRLGVSHTAIANKLREYGLSQ 508 N + A LG+ T + K+R++ +S Sbjct: 546 NRWHRQTTANLLGMDRTTLWRKMRKFKISP 575 Score = 53.9 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 47/135 (34%), Gaps = 10/135 (7%) Query: 85 LLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQL------INGFNFLRWL 138 +L+ V+ VD ++ N ++ L D + ++ F Sbjct: 12 ILDHFNIGVILVDNHRRIRQCNTSARNLLRLSEDEIIGGDCQEIFCGLPCFPTCPFHDPE 71 Query: 139 ESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQ 198 S+ +D E + G+ + L D DQ + G V +L+ + + + Sbjct: 72 TSDVRDMDVEFLDEAGEKHRVTRVGAPLLD--DQGRVQGCVTVLQDHSPFNELVNRIHYE 129 Query: 199 DVSAFSQIVAVSPKM 213 + S +I+ S M Sbjct: 130 EQSL--KIILDSLNM 142 >UniRef50_B3E3G2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfuromonadales RepID=B3E3G2_GEOLS Length = 557 Score = 463 bits (1193), Expect = e-129, Method: Composition-based stats. Identities = 113/447 (25%), Positives = 212/447 (47%), Gaps = 25/447 (5%) Query: 77 REHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLING----- 131 R + A+++++ + + +VD + N A+ ++ G ++ Sbjct: 120 RSMKRIYAIMDSVADGLFTVDEGMHITHFNKAAEEITGVSAQEAIGRPCYEIFKSEACTG 179 Query: 132 -FNFLRWLESEPQDSHNEHVV-INGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMG 189 + + + + G+ L+ ++ L D + G V +R + Sbjct: 180 ACPMVEAIATGQSIQREVEISDRKGRKKLISVSASTLYDAAG--NVMGGVETVRDLTPIT 237 Query: 190 RQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQ 249 + + ++ +F +V+ +P M+ + + + +A +A + + G++GTGK+LFA A H Sbjct: 238 AIKEEI--REKYSFRSLVSRNPAMRRLFDVMEDIAASNATVFLNGESGTGKELFARAIHD 295 Query: 250 ASPRAGKPYLALNCASIPEDAVESELFG-------HAPEGKKGFFEQANGGSVLLDEIGE 302 SPR P + +NC ++PE +ESE+FG A E + G E NGG+ LDEIG+ Sbjct: 296 LSPRREGPMVIVNCGALPETLLESEIFGVRKGAFTGATENRPGRLELCNGGTFFLDEIGD 355 Query: 303 MSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNV 362 + +Q KLLR L + F+ +G + DVR I AT +NL E+V +G FR+DLY+R+N+ Sbjct: 356 LPLPLQVKLLRVLENHEFQPLGARSPIKADVRFITATHRNLEEMVAEGTFRQDLYFRINI 415 Query: 363 LTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNA 422 +TLN+PPLRD +DI L ++ + RF ++ ++ +L +++PGNVR+L N Sbjct: 416 VTLNIPPLRDRREDIPLLVDMALQRFNLTYNKKVRSVSPEVLKLLLTHSFPGNVRELLNL 475 Query: 423 IYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNY-P 481 I +++ G E+ + + G + L L Y Sbjct: 476 IEQSVILCRGTEITLDHLPTNFLGQSHEQAQNTRRSGKIPTAAD------LNALLSRYSG 529 Query: 482 STRKLAKRLGVSHTAIANKLREYGLSQ 508 + ++A+ L + T + ++ G+ + Sbjct: 530 NRAEVARELNIDRTTLWRWMKRLGVKE 556 Score = 61.6 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 49/121 (40%), Gaps = 6/121 (4%) Query: 82 LSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLI------NGFNFL 135 S +++++ + V +VD V N A+ + G K ++ NG Sbjct: 13 FSHIMDSVADGVFTVDRDMHVIAFNRAAELMTGIKRADAVGRPCHEIFRTSVCDNGCPVR 72 Query: 136 RWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNV 195 ++ ++ E + N ++ L+ ++ +D+ G V LRS R+ + +V Sbjct: 73 EAMKKGKPVTNREVTIKNAEDKLIPVSVSASILYDDEGNPIGGVETLRSMKRIYAIMDSV 132 Query: 196 A 196 A Sbjct: 133 A 133 >UniRef50_Q17ZX8 Putative sigma-54 interacting protein n=8 Tax=Clostridium RepID=Q17ZX8_CLOD6 Length = 591 Score = 463 bits (1193), Expect = e-129, Method: Composition-based stats. Identities = 121/432 (28%), Positives = 207/432 (47%), Gaps = 19/432 (4%) Query: 87 EALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAA---QLINGFNFLRWLESEPQ 143 + + V+S+D+ K+D N +LF K D + I + + + + Sbjct: 165 NNMDKAVVSIDVDGKIDKYNSKFKELFNIK-DSITGKNIFVELDFIKKPSINNFKKDKSC 223 Query: 144 DSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAF 203 + + + + I + L++E L G V+ + + Sbjct: 224 SFFYKRYGYDSKG-IYNINKIVLKNE-----LKGYVIDFIDKRDAIKNYNKMNKDYRIKL 277 Query: 204 SQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNC 263 I+ S +++ ++A + ++ +LITG++GTGK+LFA A H S R P++A+NC Sbjct: 278 ENIIGESVAIRNSKKEALIASKSTSTVLITGESGTGKELFARAIHNHSNRVDNPFIAVNC 337 Query: 264 ASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFL 315 A+IP++ +ESELFG+ GK G FE A+ GS+ LDEIG+MS +Q+KLLR L Sbjct: 338 AAIPDNLLESELFGYEEGAFTGAKKGGKLGMFEVAHKGSIFLDEIGDMSLHLQSKLLRVL 397 Query: 316 NDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQ 375 + ++G V +DVR+I AT K+L ++VQ G FREDLYYRLNV+ + LP LR+ + Sbjct: 398 QEKELNKIGSKSNVSIDVRIIAATNKDLEKMVQNGTFREDLYYRLNVIPIKLPSLRERKE 457 Query: 376 DIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYEL 435 DI + + V ++ + + + + + Y WPGN+R+L+N I ++ + Sbjct: 458 DIPLIIKHMVKEYSKKLDKNVIDIDSRVVDAMMEYKWPGNIRELQNIIEYSVNMSSSSII 517 Query: 436 RPQDILLPDYDAATVAVGEDAME-GSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSH 494 I + + + + LDE+ L + AK LG+S Sbjct: 518 TMNVIPQKIKNTSVEELEVKSDRIIPLDELEKIEIIKALNKYKDYKKDKELTAKALGISR 577 Query: 495 TAIANKLREYGL 506 + K+ +Y + Sbjct: 578 ATLYRKIEKYNI 589 >UniRef50_D1U6M0 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U6M0_9DELT Length = 954 Score = 463 bits (1193), Expect = e-129, Method: Composition-based stats. Identities = 139/456 (30%), Positives = 231/456 (50%), Gaps = 28/456 (6%) Query: 74 PSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQL--ING 131 E+ L L A ++P+ +++VD + +V N A+ L G +R +++ + G Sbjct: 504 EKEQYRLNLEATFRSIPDAIITVDSELRVIATNSAAGSLLGIDRERANGVHFSEVLPVPG 563 Query: 132 FNFLRWLESEPQDSHNEH--------VVINGQNFLMEITPVYLQDENDQHVLTGAVVMLR 183 L L+ + S + H + + + TP+ QD+ +GAV+++R Sbjct: 564 NACLSVLKQVLRTSRSVHGYEAEFTIPALGVRTAELNCTPLIDQDKRH----SGAVLVVR 619 Query: 184 STIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLF 243 R+ + + Q+ F I+ S M+ + ++L+ L + ++I G++GTGK+L Sbjct: 620 DISRIADLEKRL--QERQGFRGIIGRSSAMQDIYRLLEQLSSLDSTVIILGESGTGKELV 677 Query: 244 AYACHQASPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVL 296 A A H RAG P + +NC+++ E +ESELFGH A K G + A GG++ Sbjct: 678 AEALHYGGSRAGHPMVKVNCSALTESLLESELFGHVRGAFTGAIRDKAGRIQTAEGGTLF 737 Query: 297 LDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDL 356 LDEIG++SP +Q KLLRFL + RVGE DVR+I AT +L V++G FREDL Sbjct: 738 LDEIGDISPLIQLKLLRFLEQKEYERVGESRTSVADVRIIAATNADLRGSVRRGAFREDL 797 Query: 357 YYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNV 416 YYRLNV+ ++LPPLR DI L + F+ F+ + G +A ++ + YAWPGN+ Sbjct: 798 YYRLNVMPVSLPPLRARQADIPLLVDHFLELFSSQFGKAFEVVAGEVMDLFMSYAWPGNI 857 Query: 417 RQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERS----- 471 R+L++ + A G E+ + + D + M G + R+ Sbjct: 858 RELRHILEHACILSPGGEILLKHMRRDFVDHMFGSGQGAPMAGPPTGPVAASGRATGREG 917 Query: 472 VLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 VL L R + + A++LG+ + +L+ +GL+ Sbjct: 918 VLAALERCGGNKARAARQLGIHRATLYRRLKGWGLA 953 >UniRef50_C5EM87 Sigma54 specific transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EM87_9FIRM Length = 642 Score = 463 bits (1192), Expect = e-129, Method: Composition-based stats. Identities = 145/494 (29%), Positives = 248/494 (50%), Gaps = 29/494 (5%) Query: 33 IDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEP 92 I ++Y E E+ + + ++ + + ++ E L L A E + + Sbjct: 157 IKNGFKVYSGIIENSEEAIGRALNSAASL-----LKNMEYEANQMEFLRLLA--ENVTDG 209 Query: 93 VLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLES--EPQDSHNEHV 150 ++ VD + ++ +AN ++F + + + F +L++ E Q NE Sbjct: 210 LIFVDDRERIGIANANVGRIFPNRR-PVAGKGFQESFP-FMAKNYLKACREKQHLDNEIY 267 Query: 151 VINGQNFLMEITPVYLQDENDQHVLTGAVV--MLRSTIRMGRQLQNVAAQDVSAFSQIVA 208 N ++ TPV + E ++T + + + ++ +L + FS I+ Sbjct: 268 RTRDMNIAVDFTPVMIGGEYKGMIITIHDIGRLQQREAQIRSKLNEMGLYAKYQFSDIIH 327 Query: 209 VSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPE 268 SP M+HV+E+A+K A +++ +LI G+TGTGK+L A + H AS R P++A+NCAS PE Sbjct: 328 QSPVMEHVIERAEKFAAVTSNVLIYGETGTGKELVAQSIHNASKRKSGPFVAINCASFPE 387 Query: 269 DAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTF 320 + +ESELFG+ GK G FEQA+GG++ LDE+ E+ Q KLLR L + Sbjct: 388 NLLESELFGYEEGAFTGAVKGGKPGLFEQAHGGTLFLDEVSELPVSFQGKLLRVLQEREV 447 Query: 321 RRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPL 380 RRVG V +DVR+I AT KNL ++ G+FREDL YRL+VL L LPPLR +DI L Sbjct: 448 RRVGGKKVVKIDVRIIAATNKNLKQMTLDGLFREDLLYRLDVLNLPLPPLRKRREDIRLL 507 Query: 381 TELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQD- 439 E ++ + ++ D T+L+ Y + GN+R+L+N + R ++ D Sbjct: 508 AEHYLMEYKEQFETCADHFTEDAMTLLSSYPFMGNIRELRNIVERISVTAQDTAVQVLDV 567 Query: 440 ---ILLPDYDAATVAVGEDAM---EGSLDEITSRFERSVLTQLYRNYP-STRKLAKRLGV 492 + L +YD G+ + + ++ + +L + + ++A+RLG+ Sbjct: 568 EESLGLGEYDRQIQTAGQVGRIQDQAAAPAYIRNIQKEEIERLLKECGYNKSEVARRLGL 627 Query: 493 SHTAIANKLREYGL 506 + T + K+ + GL Sbjct: 628 NRTTLWRKMGKMGL 641 >UniRef50_A6TJU2 Putative PAS/PAC sensor protein n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TJU2_ALKMQ Length = 630 Score = 463 bits (1192), Expect = e-129, Method: Composition-based stats. Identities = 130/487 (26%), Positives = 233/487 (47%), Gaps = 29/487 (5%) Query: 33 IDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEP 92 I P E E+ S M E R+ V A+++ + Sbjct: 156 IAPQYGCKSILIESGEEAVLSAMNEAIRVLKAAQVE-------SDRMQRFMAVIDYTSDG 208 Query: 93 VLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVI 152 V++ D +V + N + + G ++ + +Q+ + +ES P + + Sbjct: 209 VIATDKDGRVTVFNRNAEVILGTTKEKAKGQLISQIFKYDQISKLIES-PSIKVDSIYDL 267 Query: 153 NGQNFLMEITPVYLQDENDQHVLT----GAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVA 208 + P+++ ++ ++T + L IR+ +L F IV Sbjct: 268 GSTKLALNHVPIFVDGDDTGSIITFQDISKIQSLEKKIRL--ELSKKGFVAKYNFQDIVH 325 Query: 209 VSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPE 268 S M+ +++A+ + +LITG +G GK++FA + H S R P++ +NCA++P Sbjct: 326 QSSLMQKCIKRARTYGGYDSSVLITGPSGVGKEIFAQSIHNISKRKTGPFVPINCAALPA 385 Query: 269 DAVESELFGH--------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTF 320 + +ESELFG+ GK G FE A+ G++ LDEI E+ +QA+LLR + + Sbjct: 386 NLIESELFGYVEGAFTGAKKGGKPGIFEMAHKGTIFLDEISELPLDLQARLLRVIQEREV 445 Query: 321 RRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPL 380 RVG++ + VDVR+ICAT ++L E+V +G FR DL +R+N+L+LN+P L + +DI L Sbjct: 446 MRVGDNKVIPVDVRIICATNRDLKEMVIEGDFRRDLLFRINILSLNIPSLNERREDIELL 505 Query: 381 TELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDI 440 E F++ F DE K+++D L R+ + GNVR+L+ I RA+ G E++ DI Sbjct: 506 IEYFISLFCDEYKKGSMKISSDTLGYLERHHYDGNVRELQGMIERAVITCTGDEIKLDDI 565 Query: 441 LLPDYDAATVAVGEDA----MEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTA 496 + D + + E SL E+ ++ + + + S +++ LG+ + Sbjct: 566 IESDAYNVDQIISNHSNIFDEEYSLKELEDKYIKYI---SNKYSDSKQEICHILGIDRST 622 Query: 497 IANKLRE 503 + K ++ Sbjct: 623 LWRKKKK 629 >UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=Proteobacteria RepID=C4XRA9_DESMR Length = 462 Score = 463 bits (1192), Expect = e-129, Method: Composition-based stats. Identities = 128/361 (35%), Positives = 192/361 (53%), Gaps = 20/361 (5%) Query: 165 YLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAF--SQIVAVSPKMKHVVEQAQK 222 YL D V+ V +R+ R+ +N+ + +I+ SP M+ + Sbjct: 100 YLTKPLDLDVMRLTVERALDHLRLARENENLRQKLGPGVVGPEIIGKSPAMRELFSMIAM 159 Query: 223 LAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH---- 278 +A A +L+TG++GTGK+L A A H SPRAG P +A+NCA++ E +ESELFGH Sbjct: 160 VAPTEATVLVTGESGTGKELVAKALHAGSPRAGGPMVAVNCAALNETLLESELFGHEKGA 219 Query: 279 ---APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRV 335 A ++G F A+ GS+ LDEIGE++P +QAKLLR + + +RVG D V VDVR+ Sbjct: 220 FTGAERRREGRFMAADKGSIFLDEIGEIAPSIQAKLLRVIQEREIQRVGGDRPVGVDVRI 279 Query: 336 ICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVP 395 + AT ++L + V+ G FREDLYYRLNV+ +++PPLR+ QDI L + F+ RFA++ Sbjct: 280 LAATNRDLKKEVEAGRFREDLYYRLNVVAISVPPLRERGQDIPLLAQHFLTRFAEKNRKR 339 Query: 396 RPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGED 455 L R WPGNVR+L+NA+ RA+ G + +++ L A Sbjct: 340 IKGFTPAAMDHLLRCPWPGNVRELENAVERAVILSVGEYVTERELPLSAMREAGGNGAPG 399 Query: 456 A----------MEGSLDEITSRFERSVLTQLYR-NYPSTRKLAKRLGVSHTAIANKLREY 504 M G ER V+ R + + A+ LG++ + KL++Y Sbjct: 400 GAGGGAPAPGDMAGLAGMALDDVEREVILATLRDTGGNKSEAARVLGITRATLHKKLKKY 459 Query: 505 G 505 G Sbjct: 460 G 460 >UniRef50_A8IQ96 Transcriptional regulator n=18 Tax=Proteobacteria RepID=A8IQ96_AZOC5 Length = 694 Score = 463 bits (1192), Expect = e-129, Method: Composition-based stats. Identities = 138/481 (28%), Positives = 219/481 (45%), Gaps = 53/481 (11%) Query: 77 REHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGF---- 132 L +L A+ E + V+ + + NPA+ Q+ G + + +++ Sbjct: 214 ERENRL--ILRAVGEGIYGVNAEGRTTFVNPAAEQILGWTAEEMIGRDMHAMVHHHHHDG 271 Query: 133 ----NFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDE----NDQHVLTGAVVMLRS 184 N + + +D HV N + PV+++ D+ L GAVV+ R Sbjct: 272 SAYPNTTCPIYAAFRDGAVHHVE-NEVFWHRSGRPVWVEYTSTPLRDRGRLIGAVVVFRD 330 Query: 185 TIRMGRQLQNVAA-----------------------QDVSAFSQIVAVSPKMKHVVEQAQ 221 + + + A + ++ I+ S +K V+ Q Sbjct: 331 VTQKREANEQLRAALAEVDRLRERLEMENAYLQEEIRAETSHRGIIGRSEAIKKVLRQVD 390 Query: 222 KLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH--- 278 +A A +LITG++GTGK+L A A H AS R +P + +NCA+IP + ESE FGH Sbjct: 391 LVAPTDATVLITGESGTGKELIARAIHDASERRERPLIRVNCAAIPRELFESEFFGHVRG 450 Query: 279 ----APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVR 334 A + G FE A+ G++ LDE+GE+ +Q+KLLR L +G F R+GE+ VDVR Sbjct: 451 AFTGALRDRVGRFELADRGTLFLDEVGEIPLELQSKLLRVLQEGQFERIGEERTRQVDVR 510 Query: 335 VICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGV 394 +I AT ++L V+ G FREDL+YRL+V+ + PLR+ +DI L F+ + Sbjct: 511 IIAATNRDLKAAVRAGRFREDLFYRLDVMPIESVPLRERREDIPLLAAHFLDGVRRKPAD 570 Query: 395 PRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGE 454 +L+A L Y WPGNVR+L+N I R + L I LPD +A A Sbjct: 571 GPLQLSAGDMRRLQTYDWPGNVRELQNVIERGIILARNGRL---HIDLPDREAPATAQPV 627 Query: 455 DAMEGSLDEITSRF-----ERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQK 509 E R + L A+RLG+ T +A++++ G++ Sbjct: 628 PPSAELETEADRRLRLRTSILAALEAAGGKVSGPGGAAERLGLKPTTLASRMKTLGITPG 687 Query: 510 K 510 + Sbjct: 688 R 688 >UniRef50_Q3ACC6 Sigma-54 dependent transcriptional regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ACC6_CARHZ Length = 480 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 128/462 (27%), Positives = 220/462 (47%), Gaps = 25/462 (5%) Query: 68 RTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQ 127 + + +++ L +L++L E + D K ++ N A ++ G + + + Sbjct: 21 QITDLVLAQKMREELLKILDSLQEGIEIADEKGEIKYINQAFTRITGIEKEERIGKNIFE 80 Query: 128 LINGFNFLRWLE-SEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTI 186 + + ++ +P H V + + P+++ + + V + Sbjct: 81 VSPYGALAQAIKLMKPVIGHRTLVGGSKAEVVSNAVPIFIDGKLSGGAVVFQTVT--DIL 138 Query: 187 RMGRQLQNVAAQD-------------VSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLIT 233 ++ QL F+ I+ K+ + A+K A A +L+ Sbjct: 139 KISEQLSKTQEMLESFSQKLSELSGCRYTFNDIIGKDEKLLEAKKIAKKAAKSDATVLLL 198 Query: 234 GDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGF 286 G++GTGK++FA A H S R+ KP++ +NCA+IPE+ +ESELFG+ A + K G Sbjct: 199 GESGTGKEMFAQAIHMESSRSSKPFVKINCAAIPENLLESELFGYEKGAFTGATKTKMGK 258 Query: 287 FEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVEL 346 FE A+ G++ LDEIG+++ +QAKLLR L D F RVG + DVRVI AT ++L + Sbjct: 259 FELAHQGTIFLDEIGDLNLFLQAKLLRVLEDKQFERVGGIETITTDVRVIAATNRDLKRM 318 Query: 347 VQKGMFREDLYYRLNVLTLNLPPLRDC-PQDIMPLTELFVARFADEQGVPRPKLAADLNT 405 V++ FREDLY+RL V+ + LPPLR +DI+ + E + R G L Sbjct: 319 VKERKFREDLYFRLKVIDIELPPLRKRNKEDILLIAENIIGRLNRRFGKKVKGLTPKAQE 378 Query: 406 VLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAME-GSLDEI 464 + Y WPGN+R+L+N + R + +D L A V E + L +I Sbjct: 379 LFQNYPWPGNIRELENLLERTIILVDDEYLDEHHFYGYFSKANEPPVLEKSFPIKKLGDI 438 Query: 465 TSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 L + R+ + + +A++LG+S ++ NK++ Y L Sbjct: 439 EKEVISMALEKYGRSLSAKKMIAEKLGISLASLYNKIKRYNL 480 >UniRef50_B3Q676 Transcriptional regulator, NifA subfamily, Fis Family n=9 Tax=Bacteria RepID=B3Q676_RHOPT Length = 561 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 119/336 (35%), Positives = 186/336 (55%), Gaps = 13/336 (3%) Query: 184 STIRMGRQLQNVAAQDVSAFS--QIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKD 241 +R+ + + + ++ F I+ S M+ V K+A A +L+ G++G GK+ Sbjct: 218 DKVRLETENRRLKSELKQRFRPANIIGNSKPMQEVYAMVHKVASTKATVLLLGESGVGKE 277 Query: 242 LFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGS 294 L A A H SP A P++ NCA++PE ESELFGH A KG+FEQA+GG+ Sbjct: 278 LVASALHYNSPVADGPFIKANCAALPEALAESELFGHERGAFTSAIATHKGYFEQASGGT 337 Query: 295 VLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFRE 354 + LDE+GE+S QAKLLR L + TF RVG V VDVR+I AT +NL E+V +G FRE Sbjct: 338 IFLDEVGELSLPTQAKLLRVLQERTFERVGGAKPVKVDVRIIAATNRNLAEMVAEGTFRE 397 Query: 355 DLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPG 414 DL+YRLNV + +PPLRD D++ L + FV ++ E G P +++ +L Y WPG Sbjct: 398 DLFYRLNVFPITIPPLRDRGSDVITLADHFVTTYSAEIGKPIKRISTPAINMLMSYHWPG 457 Query: 415 NVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLT 474 NVR+L+N I R++ + + D+ G G+L++ + E ++ Sbjct: 458 NVRELENVIERSVILAEEGVIHGYDLPPSLQTPTETGTG---FSGTLEDRVTAVEYEMIV 514 Query: 475 QLYR-NYPSTRKLAKRLGVSHTAIANKLREYGLSQK 509 + + + + + A LG++ + ++ +GL+ K Sbjct: 515 EALKASNGNVGQAATTLGLTRRMLGLRMERHGLTYK 550 >UniRef50_C8W392 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W392_DESAS Length = 459 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 126/358 (35%), Positives = 191/358 (53%), Gaps = 21/358 (5%) Query: 170 NDQHVLTGAVVMLRSTIRMGRQLQNVAA------QDVSAFSQIVAVSPKMKHVVEQAQKL 223 N L V+ ++ +I+M R + VA Q+ + + S M+ V + K+ Sbjct: 101 NKPLNLDELVLAVQKSIKMQRLVSEVAILREELDQETDSVDSFIGQSRHMQDVFKTIGKV 160 Query: 224 AMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH----- 278 +LI G++GTGK++ A H S R+ +P++ +NCA+IPE +ESELFGH Sbjct: 161 VDSDITVLIQGESGTGKEVVARTIHSNSRRSSRPFIKINCATIPEQLMESELFGHEKGSF 220 Query: 279 --APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVI 336 A K G FE A+ G V LDEIGE+ QAKLLR L + F RVG + VDVR++ Sbjct: 221 TGAVSQKAGKFEIAHNGIVFLDEIGELPLHTQAKLLRVLQEKEFERVGGTKSIEVDVRIL 280 Query: 337 CATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPR 396 AT +NL ++VQ+G FREDLYYRLNV+ + LPPLR+ +DI L FV +FA + Sbjct: 281 AATNRNLEDMVQEGKFREDLYYRLNVVNVKLPPLRERKEDISLLINYFVKKFARKYNKNI 340 Query: 397 PKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILL-------PDYDAAT 449 ++ + +YAWPGNVR++KN +A+ L D+ L ++ Sbjct: 341 SGISQEAMIFAEKYAWPGNVREIKNVCEQAVVMARNSVLMLDDMPLIGNGNGFLEFKNNA 400 Query: 450 VAVGEDAMEGSLDEITSRFERS-VLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 + + SL +I + E+ +L L N + + AK LG++ ++ K++EY L Sbjct: 401 KISLDTNDKRSLKDIVAEVEKQVILKSLNENNWNRQNTAKALGLNRRSLYAKMKEYDL 458 >UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=A7HBA5_ANADF Length = 466 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 127/356 (35%), Positives = 199/356 (55%), Gaps = 14/356 (3%) Query: 164 VYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKL 223 V D + ++ +V +S +R L+ Q+ F +++ SP M+ V E A+ Sbjct: 105 VKPFDPEELSIMMQKIVSQQSLVRENAVLRQALKQE-YRFRDLLSKSPAMQSVFELARTA 163 Query: 224 AMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH----- 278 A ++ +L+ G++G+GK++ A A H SPRAG P++A++CA++ E +ESELFGH Sbjct: 164 ARSNSTILVLGESGSGKEVLARAVHAESPRAGGPFVAVSCAALTESLLESELFGHEKGSF 223 Query: 279 --APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVI 336 A +KG FE A+GG++ LDE+G++ P++Q LLR L + F RVG + + VDVR+I Sbjct: 224 TGAISRRKGKFEAAHGGTLFLDEVGDIGPKLQLDLLRVLEERRFHRVGGNEPIEVDVRII 283 Query: 337 CATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPR 396 AT ++L +G FREDL+YRLNV+ + +PPLR+ +DI L E FV R + E Sbjct: 284 AATNRDLRRAAHEGKFREDLFYRLNVIPILVPPLRERREDIPLLVENFVERLSVEMKRRI 343 Query: 397 PKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDA 456 ++ D L + WPGNVR+L+N + R G ++ D+ LP A G A Sbjct: 344 EGVSPDAMGALMAHDWPGNVRELRNVLERGAVVATGTVIQLSDLGLPTRLEAASKPGTLA 403 Query: 457 MEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKKNE 512 SL+E+ R +VL + + A+ LG+ + NK+R+YGL + E Sbjct: 404 ---SLEEVEKRHVAAVLAHA---NGNVSQSARILGIDRVTLYNKMRKYGLRRDGEE 453 >UniRef50_B9XM81 Sigma54 specific transcriptional regulator with PAS/PAC sensor, Fis family n=1 Tax=bacterium Ellin514 RepID=B9XM81_9BACT Length = 501 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 146/480 (30%), Positives = 236/480 (49%), Gaps = 25/480 (5%) Query: 54 LMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLF 113 L I + G+ + + ++E+L E +L D V AN ++ Sbjct: 18 LRNRITELEGLLGGQQNLKNLLGQREEFYRTVIESLAEGLLITDPNDHVIYANLRMEEIT 77 Query: 114 GQKLDRLRNHTAAQLINGF--------NFLRWLESEPQDSHNEHVVINGQNFLMEITPVY 165 G + L A +L+ + + + ++ + +G + + Sbjct: 78 GYPVSELIGAVAYELLTDKAQWPQMTKRNQERVAGKSEFYEHQLLRKDGTRHWVSVKATP 137 Query: 166 LQDENDQHV-LTGAVVMLRSTIRMGRQLQNVAAQ-DVSAFSQIVAVSPKMKHVVEQAQKL 223 ++ + + GAV +++ + + + + + F I+A SP +K V++Q + + Sbjct: 138 YKNSKGEIIGTVGAVSCIQTQKSLELENEYLLDEIRSERFGAIIASSPALKKVLQQIEVV 197 Query: 224 AMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH----- 278 A A +LI G++GTGK+L A A H S R GKP + +NCASIP++ ESE FGH Sbjct: 198 APTQANVLILGESGTGKELVARAIHDLSERKGKPLVRVNCASIPKELFESEFFGHVRGAF 257 Query: 279 --APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVI 336 A + + G FE ANGGS+ LDEIGE+ +Q+KLLR L +G F RVGED V+VR+I Sbjct: 258 TGAIKDRVGRFELANGGSLFLDEIGEIPLDLQSKLLRVLQEGQFERVGEDRTRTVNVRII 317 Query: 337 CATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPR 396 AT ++L+ + G FR DLYYRL+V + +P LR+ P+DI PL E FV + A+ GV R Sbjct: 318 AATNRDLLTEAKAGRFRLDLYYRLSVFPIEIPALRERPEDIGPLAEHFVKQSANRLGVTR 377 Query: 397 PKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQ-----DILLPDYDAATVA 451 P+L L Y WPGNVR+L+N + RA+ L+ + + P Sbjct: 378 PRLTKADVRELEGYDWPGNVRELQNVVERAVILARSGRLKFELGNNSERPFPPSARVPAP 437 Query: 452 VGEDAMEGSLDEITSRFERSVLTQLYRNYP---STRKLAKRLGVSHTAIANKLREYGLSQ 508 G + SL E+ + ++ +L L + A L + T +A++++ YGL + Sbjct: 438 DGSIDHQPSLGELKQQEKQVILNALKQAQGRIYGEEGAAAILSMKPTTLASRIQRYGLKK 497 >UniRef50_Q0AVA7 Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains-like protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AVA7_SYNWW Length = 696 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 130/459 (28%), Positives = 218/459 (47%), Gaps = 24/459 (5%) Query: 76 EREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFL 135 ++ + L A+ E+ + + D ++ N ++ G A L+ F Sbjct: 239 QKLNRELDAIFESSFDGLYVTDGQAITLRLNKGFERITGVTAAECVGRHMADLVKEGKFS 298 Query: 136 R----WLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGA--VVMLRSTIRMG 189 R + + V G L+ P++ ++ N V+T + L R Sbjct: 299 RSGTLLALEKKERVTISLVAATGNEVLVTSNPIFDEEGNIILVVTNVRDITELNELQRKL 358 Query: 190 RQLQNVAAQDVSAFSQI--------VAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKD 241 Q++ + S QI V S KMK +++ ++ + + +LI G++G GK+ Sbjct: 359 EQVEGLTQLYRSQLEQIKLQTSRQLVFNSTKMKELLDLVLRVTGVDSTILIQGESGVGKE 418 Query: 242 LFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGG 293 L A H +S R P + +NC +IPE+ +ESELFG+ GK G FE A GG Sbjct: 419 LIAEIIHSSSNRKDGPLIKVNCGAIPENLLESELFGYEAGAFTGASKSGKIGLFELAQGG 478 Query: 294 SVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFR 353 + LDEIGE+ +Q KLLRFL D RVG + + VDVR++ T +NLVE++ FR Sbjct: 479 ILFLDEIGELPLNLQVKLLRFLQDKEILRVGGEQPIIVDVRILAGTNRNLVEMIANHQFR 538 Query: 354 EDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWP 413 DLYYRLNV+ + +PPLR+ P+D+ L F+ F ++ + +L + VL Y WP Sbjct: 539 LDLYYRLNVIPIFVPPLRERPEDVPVLANYFLNVFNNKYQMN-KRLHKSVIDVLMEYHWP 597 Query: 414 GNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVL 473 GNVR+L+N + R + + QD+ + + + + L + ER +L Sbjct: 598 GNVRELENLMERMVVTSINNIISMQDLP-ASFKVPRLKLDSEQDLLPLRQAVENTERELL 656 Query: 474 TQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKKNE 512 + + S+ ++A L V+ + + K +YG+ ++ Sbjct: 657 EAAFARFRSSYQVATALQVNQSTVIRKAAKYGIKRQDGR 695 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 7/129 (5%) Query: 84 ALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWL-ESEP 142 A ++A+ PV+ +D ++ + N + +L G ++ R L+ G L L Sbjct: 128 AAIDAVYNPVIEIDNDFRIKIFNRQASRLLGIDIEEARGANVHDLLGGTEVLDSLIHGNH 187 Query: 143 QDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQL-QNVAAQDVS 201 + +VI ++FL Y D + G+V++LR + Q+ Q ++ Sbjct: 188 KPLPVNKLVIGDRSFLP-----YRNDVVQDGNVIGSVLVLREISEFEELVRQSQYTQKLN 242 Query: 202 AFSQIVAVS 210 + S Sbjct: 243 RELDAIFES 251 >UniRef50_C4XPI1 Fis family transcriptional regulator n=2 Tax=Desulfovibrio RepID=C4XPI1_DESMR Length = 653 Score = 461 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 142/448 (31%), Positives = 212/448 (47%), Gaps = 25/448 (5%) Query: 77 REHLALSA-------LLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLI 129 EHL L A +LE L + V + + N +C + G D + + Sbjct: 207 EEHLRLRALIASQRVILELLDDGVAVLGADGTIVSLNGQACSMLGLSPD-VVGRDIRSFV 265 Query: 130 NGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMG 189 LR + ++ Q H+ V + + G ++ LR T RM Sbjct: 266 RESEVLRAILADRQTFHDREVTFRLVQGELSCALSCAPFADG-----GVILTLRETRRMR 320 Query: 190 RQLQNVA-AQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACH 248 + VA A+ V F I+ S ++ V A+ A A L+ G++GTGK+LFA A H Sbjct: 321 KYAARVAGAKAVYTFEHILGQSKALREAVRLARVAAQGDATTLLLGESGTGKELFAQAVH 380 Query: 249 QASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEI 300 A R P++ +NC ++P + V+SELFG+ EG G FE A+GG++ LDEI Sbjct: 381 NAGARRKGPFVVVNCGALPRNLVQSELFGYVAGAFSGALKEGSPGKFELADGGTLFLDEI 440 Query: 301 GEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRL 360 GEM Q LLR L + R+G VDVR+I AT K+L V+ FR DLYYRL Sbjct: 441 GEMPLEAQVSLLRLLQENEVTRLGGKEARRVDVRIIAATNKDLALAVRNNAFRGDLYYRL 500 Query: 361 NVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLK 420 NVL++ +PPLR D+ LT LF+ +F G P +++ + L + WPGNVR+L+ Sbjct: 501 NVLSIAIPPLRQREGDVPLLTRLFLDKFTASLGKPELEISREALAALAAHHWPGNVRELE 560 Query: 421 NAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNY 480 N I R + + D LP + G A G R +R+++ + R Sbjct: 561 NCIERLVNVACSSRIDIAD--LPQDVMTDMLRGRPAAPGEAGMSLKRIQRALILETLRET 618 Query: 481 PST-RKLAKRLGVSHTAIANKLREYGLS 507 R+ + L +S T + KL++YG+S Sbjct: 619 GGNFRRASNLLNISRTTLYAKLKQYGIS 646 >UniRef50_C0ZHT6 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZHT6_BREBN Length = 593 Score = 461 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 138/482 (28%), Positives = 238/482 (49%), Gaps = 30/482 (6%) Query: 48 FESFSSLMAEIRRIAGVTDVRTVP-WMPSEREHL--ALSALLEALPEPVLSVDMKSKVDM 104 F +++ ++++A + ++ ++ E+ H L +++ + + V VD +++ Sbjct: 120 FADVDAILTYLQKMAELIAIKLKEHYLYVEQLHTVEKLRVVMDEMDKAVFLVDQDNRIIQ 179 Query: 105 ANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPV 164 AN + Q D A+ I+ +S P+ V + FL I P+ Sbjct: 180 ANQRARQYLQLDHDD---SQTAEWIDAIRLADAAQSAPKQVVLS-VGQEDKTFLFAIKPI 235 Query: 165 YLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLA 224 L + V+T + ++ +++ RQ+ + D F I SP + E A+++A Sbjct: 236 LLAGTVKEWVIT--LDDVQEVVQIARQVSGYSEPD--PFRMIGGNSPAIVQAKEVARRVA 291 Query: 225 MLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA----- 279 + +L+ G++GTGK+LFA A HQASPR +P+L++NCA+IPE +ESELFG+ Sbjct: 292 ASDSTVLLQGESGTGKELFAKAIHQASPRRDEPFLSINCAAIPEHLMESELFGYEEGSFT 351 Query: 280 ---PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGED-HEVHVDVRV 335 GK G FE A G++ LDEIG+MS +Q+KLLR L + R+G + + + R+ Sbjct: 352 GARKGGKPGLFEVAGKGTLFLDEIGDMSMHLQSKLLRVLQEKELYRIGGNGKPIRLAARI 411 Query: 336 ICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVP 395 I AT +L E V G+FR DLYYRL+V+ ++LP LR+ +DI+PL + A+ G Sbjct: 412 IAATHLDLQERVDAGLFRLDLYYRLHVIPIHLPSLRERREDILPLANDILLAHANRVGKG 471 Query: 396 RPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILL-PDYDAATVAVGE 454 + + +L + W GNVR+L+N I A+ ++P + + + Sbjct: 472 LHGFSKETQNILFHHDWRGNVRELENVIEYAVNMEATSWVQPASLPIRTGRLRESSPHSV 531 Query: 455 DAMEGSLD-----EITSRFERSVLTQLYRN----YPSTRKLAKRLGVSHTAIANKLREYG 505 + +G D + ER+ + + + A LG+S + KLREYG Sbjct: 532 EESQGPFDWQKQGLLLKELERAAIDTAMQQIRDRNGRKEEAAALLGISRATLFRKLREYG 591 Query: 506 LS 507 ++ Sbjct: 592 IT 593 >UniRef50_C0D6Q8 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D6Q8_9CLOT Length = 476 Score = 461 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 130/453 (28%), Positives = 226/453 (49%), Gaps = 21/453 (4%) Query: 68 RTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQ 127 R +P L++++ + VL D + + N A + +G + +++ + + Sbjct: 7 RNSAIIPWNLHPSEFQRLIDSMYDEVLIYDNQYTIVYINDACSRHYGYQPEQMIGKSFFE 66 Query: 128 LING----FNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLR 183 ++G + L + + + + G L P++ + Q L ++ +R Sbjct: 67 FVDGNCWDISVLPVIYEKKKTYAVKQKTKLGSELLTIAVPIF----DSQKNLAYVIMNVR 122 Query: 184 STIRMGRQLQN--VAAQDVSAFSQI-VAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGK 240 + + + + ++S + + S +M+ V++ A++++ + ++TG++GTGK Sbjct: 123 DNLSGVKLFNPDYIYRKSSLSYSTVPMCKSREMEQVIQFAERISQVDVTCILTGESGTGK 182 Query: 241 DLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGFFEQANG 292 + A H SPR +P+++LNCASIP + VESELFG+ GKKG FE A+G Sbjct: 183 TMVARYIHSISPRNARPFISLNCASIPNELVESELFGYIKGAFTGANTQGKKGLFEAASG 242 Query: 293 GSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMF 352 G++LLDEI E+S QAKLL L D F +G V VDVR+I AT KNL ++V G F Sbjct: 243 GTLLLDEIAELSLSTQAKLLHVLQDHEFIPIGGSSPVKVDVRIIAATNKNLRQMVADGQF 302 Query: 353 REDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAW 412 REDL+YRLNV+ + LPPLR DI L + F+ F ++ + R L + L Y W Sbjct: 303 REDLFYRLNVVEIYLPPLRKRKADIPDLIQQFLKEFNEKYNLSR-SLDSHALETLVNYEW 361 Query: 413 PGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGS-LDEITSRFERS 471 GNVR+L++ I R + + G + + + + + + FE + Sbjct: 362 KGNVRELRHMIERLVVTVTGDLITTGHLPQNMTGSTDTGTAREVPKITDYHTRMQNFEEA 421 Query: 472 VLTQLYRNYPSTRKLAKRLGVSHTAIANKLREY 504 ++ + Y+ S+RK+A L +S T +++Y Sbjct: 422 MIREAYQKCGSSRKMAAYLNISQTKANRLIQKY 454 >UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LFQ8_HALO1 Length = 515 Score = 461 bits (1187), Expect = e-128, Method: Composition-based stats. Identities = 113/359 (31%), Positives = 186/359 (51%), Gaps = 30/359 (8%) Query: 180 VMLRSTIRMGRQLQNVAA------QDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLIT 233 +LR R+ QL+ F I+ S + V+ + +++A ++ +L+ Sbjct: 126 ALLRENQRLMAQLREYTGYLNQEIHGAFDFGNIIGDSAALGEVLSKVEQVAPTNSTVLLR 185 Query: 234 GDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGF 286 G+TGTGK+L A+A H S R +P++ +NCA++ +ESELFGH A + G Sbjct: 186 GETGTGKELVAHAIHINSSRENQPFVRVNCAALAPGVLESELFGHEKGAFTGAVAQRPGR 245 Query: 287 FEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVEL 346 FE A+GG++ LDE G++ +Q KLLR L + F RVG + VDVRVI AT ++L + Sbjct: 246 FELADGGTLFLDECGDLPMEVQIKLLRALQEREFERVGGTQTIKVDVRVISATNRDLEAM 305 Query: 347 VQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTV 406 ++ G FREDLYYRLNV ++LPPLRD +D+ L F+A+FA P + Sbjct: 306 IEAGSFREDLYYRLNVFPIHLPPLRDRLEDLPALVAHFIAKFARSGMTRTPGVRGAALDK 365 Query: 407 LTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDI-----------------LLPDYDAAT 449 L Y WPGNVR+L+N I RA+ G EL + ++ + + + Sbjct: 366 LRSYTWPGNVRELENIIERAMILARGRELDADHLDFGRRAQNATPVSGTPSVISETASHS 425 Query: 450 VAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQ 508 + D + + + R ++ + ++ + A+ LG++ + + ++R++GL Sbjct: 426 PPLIGDESKPLAERLLDSERREIIAAVEKSNNNIASAARMLGINRSTLYYRMRKHGLEH 484 >UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC n=32 Tax=Proteobacteria RepID=ATOC_ECOLI Length = 461 Score = 461 bits (1187), Expect = e-128, Method: Composition-based stats. Identities = 128/357 (35%), Positives = 200/357 (56%), Gaps = 14/357 (3%) Query: 164 VYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKL 223 + D ++ +++ + L+S + R L + + I+ SP M + + K+ Sbjct: 104 IKPFDLDELNLIVQRALQLQSMKKEIRHLHQALST-SWQWGHILTNSPAMMDICKDTAKI 162 Query: 224 AMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPEG- 282 A+ A +LI+G++GTGK+L A A H S RA P++ +NCA++PE +ESELFGH Sbjct: 163 ALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAF 222 Query: 283 ------KKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVI 336 ++G FE+AN G++LLDEIGEM +QAKLLR L + F R+G + VD+R+I Sbjct: 223 TGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRII 282 Query: 337 CATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPR 396 AT ++L +V++G FREDL+YRLNV+ L LPPLRD +DI L F+ +F+ E Sbjct: 283 AATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDI 342 Query: 397 PKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGE-- 454 + ++LT ++WPGN+R+L N I RA+ G + +D+ P GE Sbjct: 343 IDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNSGPIIFSEDLP-PQIRQPVCNAGEVK 401 Query: 455 --DAMEGSLDEITSRFERSVLTQ-LYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQ 508 E +L E R E+ ++ + L + + + A LG+S A+ KL+EYG+ Sbjct: 402 TAPVGERNLKEEIKRVEKRIIMEVLEQQEGNRTRTALMLGISRRALMYKLQEYGIDP 458 >UniRef50_Q02BY0 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q02BY0_SOLUE Length = 447 Score = 461 bits (1187), Expect = e-128, Method: Composition-based stats. Identities = 134/463 (28%), Positives = 230/463 (49%), Gaps = 44/463 (9%) Query: 71 PWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLIN 130 P + L ++ + L + ++ D + + N A+ +LFG D + ++ Sbjct: 3 KLTPGWQRTSVLESVFDQLSDALVLYDPEFCITGVNHAAEKLFGMSSDEMLGKHCQEIFK 62 Query: 131 GF---NFLRWLESEPQDSHNEHVVI-----NGQNFLMEITPVYLQDENDQHVLTGAVVML 182 L Q + + + NG L+ + + D+ LTG V + Sbjct: 63 CSVCEPNCGVLVGLNQPLASANCTVRLHTPNGMERLVVMRTNQMFDDAGH--LTGVVATI 120 Query: 183 RSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAP-LLITGDTGTGKD 241 + + +++A S M+ V+ ++++ A +L+ G+ GTGKD Sbjct: 121 KDITE----------EAAPQKREVIAESGPMREVMNFVRRVSASEATTILLEGENGTGKD 170 Query: 242 LFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPEG-------KKGFFEQANGGS 294 L A H S R +P++A+NCA+IPE +ESELFG+ K+G FE A+ G+ Sbjct: 171 LVAKTLHYQSVRQAEPFIAINCAAIPETLLESELFGYEKGAFTDARAQKRGIFELADKGT 230 Query: 295 VLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFRE 354 + LDEIGE+ +QAKLLR L + TFRR+G ++H+D+RVI AT KNL E V++G FR+ Sbjct: 231 LFLDEIGEIPLMLQAKLLRVLEEQTFRRLGGLKDIHLDLRVIAATNKNLREAVKEGAFRQ 290 Query: 355 DLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPG 414 DLY+RLNV+ + +PPLR+ P+DI+P+T+ F+ + + + +L + WPG Sbjct: 291 DLYFRLNVIQILIPPLRERPEDIVPMTKFFIEHYNRKFKRQIEGVTDSAAKLLMAHDWPG 350 Query: 415 NVRQLKNAIYRALTQLDGYELRPQDIL---------LPDYDAATVAVGEDAMEGSLDEIT 465 NVR+L+NAI R++ +G + + LP +AA + + D + Sbjct: 351 NVRELRNAIERSMILEEGAYITAASLPISISRPENGLPLGNAAGMELPTDGLS------L 404 Query: 466 SRFERSVL-TQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 ERS+L L + + + A+ L ++ + K++++ L Sbjct: 405 EDNERSLLVRALEKTEGNQTQAARLLRITRDTLRYKMKKFNLR 447 >UniRef50_Q183V3 Putative sigma-54 dependent regulatory protein n=8 Tax=Bacteria RepID=Q183V3_CLOD6 Length = 638 Score = 461 bits (1186), Expect = e-128, Method: Composition-based stats. Identities = 118/444 (26%), Positives = 221/444 (49%), Gaps = 24/444 (5%) Query: 76 EREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFL 135 ++ L + A+ + + + +++VD K+ + N ++ ++FG K + H +I Sbjct: 198 QKRRLQIEAMTDFVHDGIITVDKNFKITLFNKSAEKIFGIKKENALYHNVVDVIPNTVLP 257 Query: 136 RWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRM------- 188 + +E+ E I + P+ + + + GAV + + + Sbjct: 258 QVVETMEPQI-GEIQNIGSTKIITNRVPIIVDGQ-----IQGAVSTFQDSKEISSFEHTI 311 Query: 189 GRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACH 248 R L + F I+ S K K +E A+K A P++ITG++G GK+LF + H Sbjct: 312 RRSLLSKGLSAKYTFDDIIHASKKTKDCIELAKKYACYDTPMIITGESGVGKELFCQSIH 371 Query: 249 QASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEI 300 S R P++A+NCA+IP +ESE FG+ +GK G FE A+ G++ LDEI Sbjct: 372 NYSKRKNAPFVAVNCAAIPPSLIESEFFGYEEGSFTGARKKGKAGVFELAHEGTIFLDEI 431 Query: 301 GEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRL 360 E+ +Q +LLR L + R+G D + +DV++ICA+ K+L +++ G+FR+DLY+R+ Sbjct: 432 SEIPLELQGRLLRVLQEKQVMRIGGDKVIPIDVKIICASNKDLKNMMRNGLFRQDLYFRI 491 Query: 361 NVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLK 420 N+LTL LP L++ +DI+ L+E F+ +++ + + ++ L + GN+R+L+ Sbjct: 492 NILTLYLPSLKERKEDIIKLSEFFIHKYSSKYNKTPLIITPNIKKALLEREYEGNIRELE 551 Query: 421 NAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLY-RN 479 + RA+ + + + + D +LD E+ + ++Y N Sbjct: 552 GMMERAVIVESFDSILLEKLSNEYTNNIVDKDNSDFECSNLD--LKTLEKKYIYKIYNEN 609 Query: 480 YPSTRKLAKRLGVSHTAIANKLRE 503 +T K + L ++ + + KL+E Sbjct: 610 NRNTTKTCEILKITRSTLWRKLKE 633 >UniRef50_C7PQF6 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PQF6_CHIPD Length = 1082 Score = 461 bits (1186), Expect = e-128, Method: Composition-based stats. Identities = 126/407 (30%), Positives = 197/407 (48%), Gaps = 11/407 (2%) Query: 112 LFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNE--HVVINGQNFLMEITPVYLQDE 169 +F + + + F+ L E + H++ + + L DE Sbjct: 670 IFERGIKEIAGVKLVNQNEDIGFITMLSEERNSFRHRDLHLLKGISDQVAVAVANILADE 729 Query: 170 NDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAP 229 L + + + + V + I+ P+M+ V +++ + Sbjct: 730 KIGQQL-KEINGYKEKLEEEKLYLQQEISSVYTHTDIIGAGPEMQRVFHMLSQVSFAQST 788 Query: 230 LLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH-------APEG 282 +LI G+TGTGK+L A A H SPR K + +NCA++P + +ESELFGH A E Sbjct: 789 VLILGETGTGKELIARAIHNGSPRKNKLMVKVNCAALPANLIESELFGHERGSFTGAIER 848 Query: 283 KKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKN 342 + G FE AN G++ LDEIGEM +Q KLLR + + R+G + DVR+I AT +N Sbjct: 849 RIGKFELANHGTLFLDEIGEMPLDLQVKLLRAIQEREIERIGGKSTIKTDVRIIAATNRN 908 Query: 343 LVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAAD 402 L + V +G FR DLYYRLNV + LPPLRD +DI L F+ RFA G KL++ Sbjct: 909 LQKEVAEGRFRSDLYYRLNVFPIVLPPLRDRKEDISLLAAHFIERFARSTGRKNIKLSST 968 Query: 403 LNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLD 462 LT Y WPGNVR+L++ + R++ G +R + A V ED +LD Sbjct: 969 AMKQLTAYNWPGNVRELEHVLERSILLTQGNIIREIHLSSQPKSEAKVRQEED-FSRTLD 1027 Query: 463 EITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQK 509 E+ + VL + A+ LG+ + + +++R+ G+ ++ Sbjct: 1028 EMERDYILGVLNKCKGKIFGPGGAAEILGLHVSTLNHRIRKLGIQKE 1074 >UniRef50_A6SWE4 Sigma-54-dependent transcriptional activator n=4 Tax=Proteobacteria RepID=A6SWE4_JANMA Length = 550 Score = 460 bits (1185), Expect = e-128, Method: Composition-based stats. Identities = 127/466 (27%), Positives = 219/466 (46%), Gaps = 39/466 (8%) Query: 67 VRTVPWMPS-EREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTA 125 V+ P M E+ + + + + D M N + +G + Sbjct: 92 VKFAPQMEQLEQMYQDFREIYRNSFDGIFIADGTGTTLMVNEGCERNYGVPASEMIGRHV 151 Query: 126 AQL-----INGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVV 180 ++ IN +R +ES + S + I G+ ++ P+ +DQ + ++ Sbjct: 152 SEFQRSGLINPVIAMRVIESRQRISAVQETSI-GKTIMVTGIPLL----DDQGAVRKVII 206 Query: 181 MLRSTIRMGRQLQNVAAQ----------------DVSAFSQIVAVSPKMKHVVEQAQKLA 224 R T + + + +A D A + ++ SP M+ + AQK+A Sbjct: 207 NSRDTTELIQLQEELARAQEKLHRFEMEVSQLRMDNPAIAGLITRSPGMQQITALAQKVA 266 Query: 225 MLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--- 281 +SA +LI+G++G GK++ H+ S P++ +NC +IP D +ESELFG+ Sbjct: 267 KVSATVLISGESGVGKEVLTRLIHKESAHHAGPFVKINCGAIPRDLLESELFGYEAGAFT 326 Query: 282 -----GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVI 336 GK G E A+ G++ LDEIGE+ +Q KLL+ L D T R+G + VDVRV+ Sbjct: 327 GAQRQGKVGMIEVADKGTLFLDEIGELPLDLQVKLLQVLQDRTLTRLGGTRPIQVDVRVV 386 Query: 337 CATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPR 396 AT ++L +V FR DL+YRLNV+ L++PPLR+ +DI+PL + ++ + + Sbjct: 387 AATNRDLQAMVDARQFRSDLFYRLNVVPLHVPPLRERREDILPLIQHYLDELNAQYDLD- 445 Query: 397 PKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDA 456 +L+ L Y WPGNVR+L+N + R + +R + + + D Sbjct: 446 KRLSEQALAALLDYDWPGNVRELRNMVERLVVTAPESLIRSDSLPT---LLRSSELESDL 502 Query: 457 MEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLR 502 + ++ FER ++ + Y +TR AK L VS + + +L+ Sbjct: 503 ARLDIKARSAHFERKIVKEAVERYGNTRAAAKHLQVSQSTVVRRLK 548 >UniRef50_A0N0V6 Putative regulatory protein n=2 Tax=Azoarcus anaerobius RepID=A0N0V6_9RHOO Length = 661 Score = 460 bits (1185), Expect = e-128, Method: Composition-based stats. Identities = 129/442 (29%), Positives = 219/442 (49%), Gaps = 20/442 (4%) Query: 82 LSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESE 141 L+++L ++ E ++ +D V NPA+C+ ++ +L L L Sbjct: 222 LASVLGSISEAIIIIDAAGMVTHINPAACKSLAVTAGEIQGKPFVRLFPSQPELAQLLPV 281 Query: 142 PQDSHNEHVV--INGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAA-Q 198 D+ V G ITP + +TGA++ LR +++ + Sbjct: 282 RGDNAAFEVSSERPGGRGHFVITPYVMY---ANEAVTGAILALRERREFLNEVREFSGFN 338 Query: 199 DVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPY 258 V F I+ SP + +E A+ A + +LI G+TGTGK+LFA + H SPR P+ Sbjct: 339 AVFTFDDILGESPALLRQIELARTAARQNTRILILGETGTGKELFAQSIHNCSPRRSGPF 398 Query: 259 LALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAK 310 +ALNCA+IP + +ESE+FG+ G+ G E A+GG++ LDEI +M +Q+K Sbjct: 399 VALNCAAIPRELMESEIFGYRSGAFTGARKGGQVGKLELADGGTIFLDEINQMPLDLQSK 458 Query: 311 LLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPL 370 LLR L +GT R+G+ + +DVRVI A ++L + G FR+DLYYRL+V+ L LPPL Sbjct: 459 LLRALQEGTITRLGDTRPIRIDVRVIAAANEDLYGKSRTGEFRQDLYYRLSVVELALPPL 518 Query: 371 RDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQL 430 R+ DI + + ++ P L+ +L +Y WPGNVR+L+N + Sbjct: 519 RERGDDIALIARHLLDTLGEKIDKPALSLSPPAIELLRQYPWPGNVRELENVLEMGAIMA 578 Query: 431 DGYELRPQDILLPDYDAATVA---VGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLA 487 +G ++P + D T + + S+ I RS + + + + Sbjct: 579 EGSIIKPGHLAYRMRDRRTPERQHAAASSRDQSIPAIQLDLIRSAIEEF---NGNVDLVG 635 Query: 488 KRLGVSHTAIANKLREYGLSQK 509 ++LG+S + +++++G+ ++ Sbjct: 636 RKLGLSRATVYRRMQQHGIVKQ 657 >UniRef50_Q2RH79 Sigma54 specific transcriptional regulator with PAS sensor, Fis family n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RH79_MOOTA Length = 562 Score = 459 bits (1183), Expect = e-128, Method: Composition-based stats. Identities = 137/431 (31%), Positives = 204/431 (47%), Gaps = 32/431 (7%) Query: 104 MANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITP 163 N L G K L ++ + L S + E V G+ L+ P Sbjct: 137 AINHLYASLLGAKAGALIGREVKDILPFTSLPEVLSSGMAVAGRE-VAFRGKKLLLSEVP 195 Query: 164 VYLQDE-----------------NDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQI 206 V L + +L + +Q D A+ I Sbjct: 196 VKDGAGHLLGGVGKALDLEDLAAAGFSDLARRLQVLEGKVLFYQQELQSIQGDQDAWQGI 255 Query: 207 VAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASI 266 + VSP M + + A ++A A +LITG++GTGK+L A A H+ASPR +P + +NCA+I Sbjct: 256 LGVSPAMVRLKKMAARVARGEANVLITGESGTGKELLAQAIHRASPRRNEPLIKINCAAI 315 Query: 267 PEDAVESELFGH--------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDG 318 PE+ +E+ELFG+ A GK G FE A+GG++ LDE+G++ MQ KLLR L + Sbjct: 316 PENLLEAELFGYEEGAFTGAARGGKPGKFELADGGTIFLDEVGDLPLSMQPKLLRVLQER 375 Query: 319 TFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIM 378 F RVG + VDVR+I AT ++L+ L G FR DLYYRL V+TL +PPLR+ P D+ Sbjct: 376 AFERVGGRRTIKVDVRIIAATNQDLLALEAAGKFRLDLYYRLAVVTLTVPPLRERPGDLE 435 Query: 379 PLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLD-GYELRP 437 L + R L ++ + +RY+WPGNVR+L+N + A LD G E+ Sbjct: 436 ILVAAIIRRLNARYHQTVRGLDPEVQRLFSRYSWPGNVRELENVLEHAFNFLDPGEEI-- 493 Query: 438 QDILLPDYDAATVAVGEDAMEGSLDEITSRFERS-VLTQLYRNYPSTRKLAKRLGVSHTA 496 I L A L + ER +L L + ++ A+ LG+ + Sbjct: 494 --ITLKHLPATMQRTIGGGGGLKLKSAVATAEREVILKALAAAGGNKQEAARLLGIHPSG 551 Query: 497 IANKLREYGLS 507 + KL+ Y ++ Sbjct: 552 LYQKLKRYDIN 562 Score = 43.1 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 1/68 (1%) Query: 77 REHLALS-ALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFL 135 +EHL A+L A + ++ VD + +AN + + G LR ++ Sbjct: 2 KEHLDFWGAILAARRQGMIYVDAGGLIKVANSLATAILGLDGCDLRGRRLTEVFPETRLA 61 Query: 136 RWLESEPQ 143 L + Sbjct: 62 EVLTRKGP 69 >UniRef50_P12626 Nitrogen fixation protein anfA n=11 Tax=Bacteria RepID=ANFA_AZOVI Length = 533 Score = 459 bits (1183), Expect = e-128, Method: Composition-based stats. Identities = 125/336 (37%), Positives = 185/336 (55%), Gaps = 13/336 (3%) Query: 184 STIRMGRQLQNVAAQDVSAF--SQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKD 241 +R+ + + + F S I+ S M+ V E K+A A +LI G++G GK+ Sbjct: 195 ERVRLENENRRLKHALKERFKPSNIIGNSKPMQEVYELIHKVASTKATVLILGESGVGKE 254 Query: 242 LFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPEG-------KKGFFEQANGGS 294 L A A H SP A + NCA +PE+ ESELFGH KG FEQA+GG+ Sbjct: 255 LVANAIHYNSPNAEAALVTSNCAPLPENLAESELFGHEKGSFTGALTMHKGCFEQADGGT 314 Query: 295 VLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFRE 354 + LDE+GE+SP +QAKL+R L + TF RVG V VDVR+I AT +NLVE+V++G FRE Sbjct: 315 IFLDEVGELSPTVQAKLVRVLQNRTFERVGGSKPVKVDVRIIAATNRNLVEMVEQGTFRE 374 Query: 355 DLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPG 414 DLYYRLNV + +PPLR+ D++ L + FV+ F+ E G +++ +L Y WPG Sbjct: 375 DLYYRLNVFPITVPPLRERGSDVIALADHFVSAFSRENGKNVKRISTPALNMLMSYHWPG 434 Query: 415 NVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLT 474 NVR+L+N + RA+ D + ++ T A +L+E E ++ Sbjct: 435 NVRELENVMERAVILSDDDVIHSYNLPP---SLQTSKESGTAFGLTLEEKIKAVECEMIV 491 Query: 475 QLYRN-YPSTRKLAKRLGVSHTAIANKLREYGLSQK 509 + +N + AK LG++ + ++ YG+S K Sbjct: 492 EALKNSSGHIGEAAKELGLARRMLGVRMERYGISYK 527 >UniRef50_C3ICC4 Sigma54 specific transcriptional regulator, Fis n=4 Tax=Bacillus thuringiensis RepID=C3ICC4_BACTU Length = 693 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 138/482 (28%), Positives = 229/482 (47%), Gaps = 39/482 (8%) Query: 48 FESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANP 107 F+ S++ I + V +++ L +L ++ + + D K + NP Sbjct: 219 FQDISTVEELIEELNRVKELKK-----------QLELILHSVKDLIALTDSKGRFIYCNP 267 Query: 108 ASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQ 167 L N Q I G ++ + G +++ +++P+ ++ Sbjct: 268 EMEGFLNS----LDNPDKVQFIFGIKKWKFCIKSQKCIPQLLDFKLGNSYIAKLSPILVE 323 Query: 168 DENDQHVLT-----------GAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHV 216 +E +LT ++ + I+ + + +F +I+ S + Sbjct: 324 EELCGTILTMSPFHETQSLFDQLINEKKRIKYLESELSKYKKLNDSFLEIIGCSDVLMET 383 Query: 217 VEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELF 276 + A K+A + +LITG++GTGK+L A H+ S R KP++ +NCA+IP + +ESELF Sbjct: 384 LFIANKVAKSDSTVLITGESGTGKELIAKGIHKVSLRKDKPFIRVNCAAIPPNLIESELF 443 Query: 277 GHAPEG-------KKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEV 329 GH ++G FEQAN G++ LDEIG++ +Q KLLR L + RVG D + Sbjct: 444 GHEKGAFTGALHMRRGKFEQANNGTIFLDEIGDLKLDLQVKLLRVLQEKEIVRVGGDKTI 503 Query: 330 HVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFA 389 ++VRV+ AT NL ++V FREDLYYRLNV+ +++PPLR+ DI L E F F Sbjct: 504 KLNVRVLAATNGNLQKMVHDREFREDLYYRLNVIPIHIPPLRERKADIQSLIEYFRGHFN 563 Query: 390 DEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELR----PQDILLPDY 445 D L +Y WPGN+R+L+N I RA+ + L P +I + Sbjct: 564 TSLNKEIHSYTDDFLHALMKYNWPGNIRELQNVIERAMNLSENDVLEIGDLPDNINMNSQ 623 Query: 446 DAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYG 505 + + + E L S +E+ +L + + YPS K LG++H +A K+R+Y Sbjct: 624 QNSIINNQIENTETVL--TMSEYEKKILKHVIQFYPSFNAAGKALGLTHKTVAAKVRKYN 681 Query: 506 LS 507 L Sbjct: 682 LE 683 Score = 64.7 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 68/177 (38%), Gaps = 19/177 (10%) Query: 26 IDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMP-SEREHLALSA 84 + + +I ++ + F E M+ I I + V ++ ++ +HL L Sbjct: 68 LSIASFKIKKGDKVIIQFEEEVS------MSIIEEIKNYLEEEKVNYIEQNQTDHLLLEN 121 Query: 85 ------LLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWL 138 + L ++ V+ ++ + N +L G +++L N A +I L Sbjct: 122 FIAIEGIFSRLSHGLVVVNKENLITYVNNEGEKLLGMSVEKLLNQRADLVIPHSRLHHVL 181 Query: 139 ESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNV 195 ++ ++ + V + Q + TP+ L + GAV + + + ++ + Sbjct: 182 QTGKEEIAQKQV-VGKQVIITNRTPIILN-----QNIVGAVALFQDISTVEELIEEL 232 >UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WZC4_DESRD Length = 448 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 126/410 (30%), Positives = 198/410 (48%), Gaps = 30/410 (7%) Query: 112 LFGQKLDRLRNHTAAQLI----NGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQ 167 + KL + + + + + + + + N+L PV Sbjct: 53 ITDLKLPDITGLDILEQVKATWPKLPVVMITAYGSISNAVQAMKLGAFNYLT--KPV--- 107 Query: 168 DENDQHVLTGAV----VMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKL 223 D ++ +L V +L M RQL+ D + +V S M+ + +K+ Sbjct: 108 DPDELLLLVQNVFERSQLLEENQTMRRQLR-----DRYSLGNMVGKSKAMQELFNLIEKV 162 Query: 224 AMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH----- 278 A A +L+TG+TGTGK+L A H A P++ ++CA++PE +ESELFGH Sbjct: 163 AQYEANVLVTGETGTGKELVARGIHYAGQEENLPFVPIDCAAVPETLLESELFGHSRGAF 222 Query: 279 --APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVI 336 A E KKG E A+GG++ LDEIGE+ +Q K LRFL + R+GE VDVR+I Sbjct: 223 TGAAEQKKGQIELAHGGTLFLDEIGELPLALQKKFLRFLQEKEIVRLGETRRRKVDVRII 282 Query: 337 CATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPR 396 AT ++L + G +REDL+YRLNV+++ +PPLR+ DI PL F+A++ + G Sbjct: 283 AATNRDLEAEIAAGQWREDLFYRLNVISIEIPPLRERRDDIPPLVNHFLAKYNAQNGKAI 342 Query: 397 PKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDA 456 + ++ V Y WPGNVR+L+N I RA+ G + LP A Sbjct: 343 QGMTGEVMEVFMAYDWPGNVRELENVIERAVVLCMGDSIAMS--CLPPKLQERSAPAPST 400 Query: 457 MEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 +L E+ R L + + + A+ LG+S + K++ +GL Sbjct: 401 DGVNLMEMEKRLIVQTLEKTEQ---NQSAAARELGISRKQLRTKMKHHGL 447 >UniRef50_A4J616 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=A4J616_DESRM Length = 454 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 126/400 (31%), Positives = 208/400 (52%), Gaps = 33/400 (8%) Query: 125 AAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRS 184 A L+ + D+ E + + +++ + + + V+ A++ Sbjct: 70 AKDLMPKLPIIMITAHGTIDTAIEAMKLGATDYITK----PFDLDELKMVIRQALM---- 121 Query: 185 TIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFA 244 + ++ + ++ + QIV S + V +K+A +A +L+TG++GTGK++ A Sbjct: 122 VNHLQEEVTFLRSELNKKYGQIVGNSQAIHDVCGLIEKVADSNATVLVTGESGTGKEITA 181 Query: 245 YACHQASPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLL 297 + HQ S R KP++ +NCA++PE +ESELFGH A K G FE AN G++ L Sbjct: 182 LSIHQLSSRRDKPFVPINCAALPESLLESELFGHEKGAFTGAVARKLGRFELANQGTLFL 241 Query: 298 DEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLY 357 DEI EM MQ KLLR L + F RVG + +DVRVI AT ++ +E ++KG FREDL+ Sbjct: 242 DEITEMPLSMQVKLLRVLQEKEFERVGGTDSIKIDVRVIAATNRDPMECIRKGTFREDLF 301 Query: 358 YRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVR 417 YRLNVL ++LPPLR+ +DI L F+ +F Q +++ + +L Y WPGN+R Sbjct: 302 YRLNVLPIHLPPLRERTEDIPLLAMHFIKKFNPSQ---EQRMSPEAMGLLISYEWPGNIR 358 Query: 418 QLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEG----------SLDEITSR 467 +L+N I R++ G E++P LP V + G S DE+ Sbjct: 359 ELQNVIERSIILAQGNEIKPHH--LPKEIQKLDEVKNETTHGLIINFPDDGISFDEVEKE 416 Query: 468 FERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 +L L ++ + + A+ LG++ +A+ + ++Y L Sbjct: 417 L---ILKALEKSNGNQTRAAQLLGITRSALLYRAQKYRLK 453 >UniRef50_Q3A356 Two component, sigma54 specific, transcriptional regulator, Fis family n=11 Tax=Desulfuromonadales RepID=Q3A356_PELCD Length = 471 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 122/428 (28%), Positives = 197/428 (46%), Gaps = 33/428 (7%) Query: 107 PASCQLFGQKLDRLRNHTAAQL-INGFNFLRWLESEPQDSHNEHVVING---------QN 156 + ++ + + ++G L+ ++ + ++ + G + Sbjct: 49 EKALEILSKTPFEVILTDLFLPGVSGIEILKRVKEQWPFTNVILITGKGSAESAVEAMKE 108 Query: 157 FLMEITPVYLQDENDQHVLTGAVVMLR---STIRMGRQLQNVAAQDVSAFSQIVAVSPKM 213 + L E Q ++ AV R + + +QL+ F I+ S M Sbjct: 109 GAFDYITKPLHFEKLQVIIAKAVEKSRLVAENLYLRQQLR-----GKYRFDNIIGNSLPM 163 Query: 214 KHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVES 273 ++V + +K+ + +LI G++GTGK+L A A H R KP++A+NC +IP + +ES Sbjct: 164 QYVFSRMEKVLNTDSTILILGESGTGKELVAKAIHYNGHRREKPFVAINCGAIPAELLES 223 Query: 274 ELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGED 326 ELFGH A K G F+QA+ G++ LDEIG M +Q KLLR L + +VG Sbjct: 224 ELFGHVRGAFTGAVADKTGKFQQAHQGTIFLDEIGTMPLHLQMKLLRVLQEQEVEKVGSS 283 Query: 327 HEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVA 386 ++ +DVRVI AT NL E V++G FR DLYYRLNV+ + LPPLR+ +DI L F+ Sbjct: 284 KKIKLDVRVISATNCNLEEEVEQGRFRADLYYRLNVIPIALPPLRERREDIALLARYFLQ 343 Query: 387 RFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILL---- 442 + E P + L Y WPGNVR+L+N I R +T D + D+ Sbjct: 344 KTCTEMNQPLISITPGAMNCLENYHWPGNVRELENVIERTVTLTDSIAIGKSDLPANISG 403 Query: 443 ---PDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYR-NYPSTRKLAKRLGVSHTAIA 498 D D + E+ + ER ++ + + A L + T + Sbjct: 404 SCCEDEDPQISCPRLTESGMDMPEVIAGIERCLIKSAMGLSGGVKARAASLLNIKRTTLV 463 Query: 499 NKLREYGL 506 K++ G+ Sbjct: 464 EKIKRLGI 471 >UniRef50_Q2LRH6 Transcriptional regulator with sigma 54 interaction domain n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LRH6_SYNAS Length = 592 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 128/484 (26%), Positives = 233/484 (48%), Gaps = 36/484 (7%) Query: 58 IRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKL 117 + R A V+D ++ + L ++ + + +L D + V N A ++ Sbjct: 110 LLRDATVSDKIRAELKSCKKLNKELEGIIASSHDGILITDGEGNVLKINDALLRITELTR 169 Query: 118 DRLRNHTAAQLINGFNFLRW-----LESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQ 172 + H L +F E + + G+ ++ TP++ N Sbjct: 170 EHFLGHKMESLHENGHFHAESIESRARKEQKTVTGIQKIRTGKEVMVTSTPMFDDQGNIL 229 Query: 173 HVLTGA-----VVMLRSTIRMGRQLQNVAAQDVSAF-------SQIVAVSPKMKHVVEQA 220 ++T A ++ L+ + R++ + + + ++++ SP M ++E + Sbjct: 230 RMVTNARDMSEIINLQEQLAQSREVSSRLQTEFNRMLEDDLRANEMITESPTMYRIIEMS 289 Query: 221 QKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAP 280 +++A +LI G++G GK++ A H S R ++ +NC +IP+ +ESELFG+ Sbjct: 290 RRIAGSEVTVLIQGESGVGKEVLAKLIHVWSKRR-GAFIKVNCGAIPQHLLESELFGYNR 348 Query: 281 --------EGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVD 332 EGK G FE A G++ LDEI ++ +Q K L+ + D F R+G + +D Sbjct: 349 GAFTGANREGKPGIFELAAEGTLFLDEIEDLPLDLQVKFLQVVQDRAFIRLGGTRVIKLD 408 Query: 333 VRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQ 392 VR I A+ + L +LV + FREDL+YRLNV+ + +PPLR +D+ L F+ R+ + Sbjct: 409 VRFIAASNRELNKLVAERKFREDLFYRLNVVPITIPPLRQRKEDVPLLVNHFLNRYNAKY 468 Query: 393 GVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDIL---------LP 443 GV +A L + Y WPGN+R+LKN I R + G + + + L Sbjct: 469 GVE-KTMAPALLSNFMNYPWPGNIRELKNMIERLVITCSGNIIDVEAMGTKLNISSRNLT 527 Query: 444 DYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLRE 503 D A A ++ +L E+ E+++L+ + Y ++R++ + LG+SHTA+ KL++ Sbjct: 528 DQTVAPEAGHKEEPLSTLKEVVEEAEKNILSGALKKYRNSRQIGRVLGISHTAVLKKLKK 587 Query: 504 YGLS 507 Y L+ Sbjct: 588 YHLA 591 Score = 53.9 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 48/124 (38%), Gaps = 9/124 (7%) Query: 85 LLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQD 144 +L ++ +L+VD K + N + + +L + A + L ++ S PQ Sbjct: 24 VLNSINYGILAVDRKGMISACNAVARKFLDIDG-QLIGNPVASVPQASELLDFIHSNPQH 82 Query: 145 SHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVM------LRSTIRMGRQLQNVAAQ 198 H + G+ + + D+ +L A V L+S ++ ++L+ + A Sbjct: 83 HHERRITFQGRTLCVHS--ISGSDDETVILLRDATVSDKIRAELKSCKKLNKELEGIIAS 140 Query: 199 DVSA 202 Sbjct: 141 SHDG 144 >UniRef50_A9VKT7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=19 Tax=Bacillus RepID=A9VKT7_BACWK Length = 709 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 135/473 (28%), Positives = 234/473 (49%), Gaps = 35/473 (7%) Query: 64 VTDVRTVPWMPSEREHLA-----LSALLEALPEPVLSVDMKSKVDMANPASCQLF-GQKL 117 V D+ V M E E++ L A+L ++ + +L V+ K ++ + F G L Sbjct: 224 VQDLPMVEDMAMEIEYIKDLNKDLHAILSSIYDEILVVNHKGELIRYSETVINDFWGSNL 283 Query: 118 DRLRNHTAAQLIN----GFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQH 173 L L + R + + + +G+ L PV+ ++ Sbjct: 284 KDLLGKNLLDLEKKGLFSPSVTRLVLEKQKKVSVVQETKSGRKILAVGNPVFNENGELHR 343 Query: 174 VLTGA-----VVMLRSTIRMGRQLQNVAAQDVSAFSQ-------IVAVSPKMKHVVEQAQ 221 ++ + L++ + +++ +++ F ++ SPKM+ ++ QA+ Sbjct: 344 IIIASRDITEATRLKTELHEIKKISEQYKKELDDFKNKDRFLKKLIYCSPKMEQIINQAK 403 Query: 222 KLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE 281 K+A S+ +LI+G++G GK++ A A HQ R+ KP+L LNC +IPE +ESELFG+ Sbjct: 404 KIADFSSNVLISGESGVGKEVIAQAIHQLGNRSSKPFLKLNCGAIPETLLESELFGYTKG 463 Query: 282 --------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDV 333 GK+G+F++A+ G + LDEIGEM +Q KLLR L + +G + ++V Sbjct: 464 AFTGADKNGKEGYFKRADQGILFLDEIGEMPLHLQVKLLRVLQEQEVIPIGSTTPMKINV 523 Query: 334 RVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQG 393 ++I AT K+L ++V+ G FREDL+YRLNV+ L +P LR+ +D+ L F+ + ++ Sbjct: 524 QIIAATNKSLEKMVESGTFREDLFYRLNVIPLRVPSLRERMEDVPVLAFHFLQQLNEKYN 583 Query: 394 VPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQ---DILLPDYDAATV 450 L D +L Y+WPGNVR+L+N I R + D + + L P YD Sbjct: 584 KNY-HLTPDALNLLEFYSWPGNVRELQNMIERLVVSADDPVIEAEFVSKFLTPGYD-FNK 641 Query: 451 AVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLRE 503 + L E E ++ + Y +T K AK LG+S ++++ K ++ Sbjct: 642 SKPVITRVLPLQEALHSVEEQLILLAMKQYKTTTKAAKALGISQSSVSRKYQK 694 Score = 55.1 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 26/170 (15%), Positives = 68/170 (40%), Gaps = 8/170 (4%) Query: 18 LDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSER 77 LL+ + L I ++ + + E+ + G V ++ Sbjct: 62 SKLLLSNAVSLDTICHLSKDISLTALFQIIGAPIAIVKNEVDELTGYIRREDVFAELFKQ 121 Query: 78 EHLA---LSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNF 134 E+ + L +L ++P + VD + K+ N + ++ +++ N A + NG + Sbjct: 122 ENQSVDILKIILTSIPMGIFVVDREKKIVNCNESGLKMIKSTPEKVMNVPAELIFNGEHI 181 Query: 135 LRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRS 184 ++ + N+ + N L++ +P+ D++ + G V++++ Sbjct: 182 NNVF-TKGKTILNQLQITNEMGVLVDYSPIPNFDQS----IEGMVIIVQD 226 >UniRef50_B7DTW4 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DTW4_9BACL Length = 668 Score = 458 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 128/432 (29%), Positives = 217/432 (50%), Gaps = 25/432 (5%) Query: 91 EPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHV 150 E +L D ++ P + + + +I L + +H + Sbjct: 240 EALLLFDRTLRIIAETPEARNFLCNLQHQFPGCSPRAVIRDA-----LLACGGVTHTIEL 294 Query: 151 VINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVS 210 + + + PV + ++ A R G ++ + A + I+ S Sbjct: 295 LDP--KYKLTSMPVLRNGQQVGCIILLARDSQSRHTR-GHRVTDNAINVNHPWRTIIGSS 351 Query: 211 PKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDA 270 ++ +++AQ +A +AP+LITG++GTGK+LFA A H+ASPR +P++A+N A++P + Sbjct: 352 RVIQRAIQRAQIVAATNAPVLITGESGTGKELFARAIHEASPRGKQPFVAVNIAALPREL 411 Query: 271 VESELFGHAPE--------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRR 322 + SELFG+ P GKKG FE+ANGG++ LDEIG+M +Q LLR L + R Sbjct: 412 IASELFGYEPGAFTGAHPRGKKGKFEEANGGTLFLDEIGDMPLELQVYLLRVLQEKKITR 471 Query: 323 VGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTE 382 +G VDVR+I AT +NL + V G FR DL+YRLNV+ + LPPLRD D+ + + Sbjct: 472 LGSTTSEAVDVRIIAATNQNLAQRVANGEFRLDLFYRLNVVEIELPPLRDRLADVPSIAQ 531 Query: 383 LFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILL 442 F++ FA + + ++ + +Y WPGNVR+L+N I ++ + + D L Sbjct: 532 HFLSLFAQKHDKSVERFDPEVLNLFKQYHWPGNVRELQNVIEYSVIFSETDSITVND--L 589 Query: 443 PDYDAATVAVGEDAMEGSL------DEITSRFERSVLT-QLYRNYPSTRKLAKRLGVSHT 495 PDY ++ + + + + ER ++ L + + ++A++L S T Sbjct: 590 PDYLTRSIFKNLEVSDKPIYDTIEMSDAIENEERRLIAYWLEKTNGNISQVARQLRRSRT 649 Query: 496 AIANKLREYGLS 507 I K++ YGL+ Sbjct: 650 TIYRKIKHYGLN 661 >UniRef50_B8FIH6 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FIH6_DESAA Length = 558 Score = 458 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 122/436 (27%), Positives = 205/436 (47%), Gaps = 19/436 (4%) Query: 84 ALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLIN------GFNFLRW 137 A+ ++LPE V ++D ++ N A+ Q+ G + G + Sbjct: 128 AVFDSLPEGVFTIDTNWRITSFNQAAEQMTGFSRKEALGKQCRDIFRSDLCERGCPMRQA 187 Query: 138 LESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAA 197 +ES + +++ + + N L GAV R A Sbjct: 188 IESGSAKMDQDVRILDKGGAKLNLLVNVSVLRNTDGQLVGAVETFRCLTDEYHLPS--LA 245 Query: 198 QDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKP 257 F IV S M+ + + +A A +L+TG++GTGK++FA A H SP + P Sbjct: 246 DKTGLFQGIVGQSNVMRRLFQMLPDVAASEASVLLTGESGTGKEIFARAIHSLSPSSKGP 305 Query: 258 YLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAK 310 ++A+NC++I E +E+E FGH A + + G FE A GG++ LDE+ E+ P Q K Sbjct: 306 FVAVNCSAIAESLIEAEFFGHEKGSFTGADQSRAGRFEVAKGGTIFLDEVAELRPEHQVK 365 Query: 311 LLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPL 370 LLR L F RVG + ++ RVI AT ++ ++++ FREDLYYRL + ++LPPL Sbjct: 366 LLRVLEQKMFERVGGTKTIPMEARVISATNLDITAMLEERTFREDLYYRLRTVPMHLPPL 425 Query: 371 RDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQL 430 R+ +DI L + F+ F + L + Y WPGNVR+L+ + A + Sbjct: 426 RERVEDIPLLVQHFIRMFNKKHRKEVRALDPKVLNFFMEYHWPGNVRELERVMEYAYVFV 485 Query: 431 DGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRL 490 G + + + + AA G + +DE + R++L L + ++ A L Sbjct: 486 KGPVIMMKHLPTIEEFAAKRKSG---IPQDIDE-EASERRAILRALEKAGGKRQEAANLL 541 Query: 491 GVSHTAIANKLREYGL 506 G+S T++ +++ G+ Sbjct: 542 GMSRTSLWRRMKSLGM 557 >UniRef50_Q8EN58 Transcriptional regulator n=1 Tax=Oceanobacillus iheyensis RepID=Q8EN58_OCEIH Length = 466 Score = 458 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 129/459 (28%), Positives = 223/459 (48%), Gaps = 34/459 (7%) Query: 82 LSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESE 141 + ++ L E ++ VD K V + A C + +++ + +I +++ Sbjct: 9 IEQIITLLNERIVVVDAKGIVVYMDQAYCDFIERPVNQCIGYHVKDVIENTRMHVIVKTG 68 Query: 142 PQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLT-------------GAVVMLRSTIRM 188 + + H ING + P+ + DE V T + L + + Sbjct: 69 KIELEDFH-PINGSVMIANRFPIVVDDEIVGAVGTVMFPTPENLRDFKNKIQQLVTDLSY 127 Query: 189 GRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACH 248 R N + F ++ S + H+ E A+ +A + +LITG++GTGK+LFA A H Sbjct: 128 YRDKVNNELRSKYTFKDLIGNSQEFVHLKEFAETVAGNDSSVLITGESGTGKELFANAIH 187 Query: 249 QASPRAGKPYLALNCASIPEDAVESELFGH--------APEGKKGFFEQANGGSVLLDEI 300 +S R P+L +NC++IPE+ ESELFG+ GKKG FE A+ G++ LDEI Sbjct: 188 NSSLREQHPFLPINCSAIPEELFESELFGYSEGAFTDAKKGGKKGLFEIAHNGTIFLDEI 247 Query: 301 GEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRL 360 GE+ MQ+KLLR L + + +G + ++VR+I AT +NL+++V+ G FREDLYYRL Sbjct: 248 GELPLSMQSKLLRVLQEREIQPIGAQKYISINVRIIVATNRNLLKMVENGEFREDLYYRL 307 Query: 361 NVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLK 420 NV+ +++PPLR +DI + + + ++ ++ L + WPGNVR+L+ Sbjct: 308 NVIHIDIPPLRKRKEDIKQTAYQLLRKLEHKFYRSDVMISKEVIKQLEMHHWPGNVRELE 367 Query: 421 NAIYRALTQLDGYELRPQ-------DILLPDYDAATVAVGEDAME----GSLDEITSRFE 469 N + RA+ L + Q DI+L + E + E+ + E Sbjct: 368 NVLERAINMLKENTILLQHLPLYIRDIILEERMNIEQTEKNRGNEIVYLKKMKEVIADAE 427 Query: 470 RSVLTQLYRNY-PSTRKLAKRLGVSHTAIANKLREYGLS 507 + + + + + AK LG+ T++ +K +Y ++ Sbjct: 428 KQAIQNALSHTKGNKLEAAKLLGIGKTSLYDKCHQYSIN 466 >UniRef50_B8FQQ1 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfitobacterium hafniense DCB-2 RepID=B8FQQ1_DESHD Length = 717 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 127/454 (27%), Positives = 210/454 (46%), Gaps = 34/454 (7%) Query: 79 HLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLI-NGFNFLRW 137 H L L E ++++D + + N + ++ D N + L W Sbjct: 272 HDLLRTTLSLTGEAIITIDCQGNILEMNETARKILQIPPDSQENVNITGYLSKNCLLLDW 331 Query: 138 LESEPQDSHNEHVVING---QNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQL-Q 193 + + E + G Q++++ + V ++N AV+ ++ + Sbjct: 332 VAEGKDLTDKEEIFYFGNTPQSYIVSMKVVLGDNKNGGL----AVLRFQNARTYNLNATK 387 Query: 194 NVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPR 253 F ++ SP K + A+K + SA +L+ G++GTGK+L A + H R Sbjct: 388 RAGTNASFHFDDLIGESPSFKGTLSLAKKFSKTSANILLLGESGTGKELLAQSIHND-YR 446 Query: 254 AGKPYLALNCASIPEDAVESELFGHAPE--------GKKGFFEQANGGSVLLDEIGEMSP 305 P++ALNCA+IP +ESELFG+ G+ G E A+ G++ LDEIG+M Sbjct: 447 PEGPFIALNCAAIPRSLIESELFGYESGSFTGADRTGRPGKIELADKGTLFLDEIGDMPL 506 Query: 306 RMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTL 365 +QA LLR L D R+G +VD RVI AT K+L +VQ+ FRED+Y+RL+VLT+ Sbjct: 507 DIQAVLLRVLEDRKVLRIGGRKAKNVDFRVIAATNKDLRRMVQEKTFREDIYFRLSVLTI 566 Query: 366 NLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYR 425 ++PPLR DI L + F++ + G + L+ + +LT Y+WPGN+RQL+NAI Sbjct: 567 HIPPLRTRSGDIEKLCQYFLSNYCRSNGYGKKALSEEALYLLTSYSWPGNIRQLENAIIY 626 Query: 426 ALTQLDGYELRPQDILL-------------PDYDAATVAVGEDAMEGSLDEITSRFERSV 472 + D + + + P +L E+ ++ Sbjct: 627 GINLSDNSLIEARHLPTDILGADKVEKPKRPPAMEIPATHEAYGRSSTLQEMELN---AI 683 Query: 473 LTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 + L + S K AK L +S + + +LRE + Sbjct: 684 IMALEKTNNSVTKAAKILNISKSTLYRRLRELNM 717 >UniRef50_A8MEE7 Putative sigma54 specific transcriptional regulator n=2 Tax=Clostridiaceae RepID=A8MEE7_ALKOO Length = 622 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 130/471 (27%), Positives = 235/471 (49%), Gaps = 28/471 (5%) Query: 43 FAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKV 102 F ES +M + + + + L +L+ + + V+ ++ + KV Sbjct: 167 FINASKESIYEVMGHAKEVID-------NLYEQKYNNTVLKTILDEVHDAVIVMNYEGKV 219 Query: 103 DMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEIT 162 + N + +L + + + ++++ NF++ D N+ + I + + Sbjct: 220 RLYNERAMELLKKDREEIIGGNLSEVLPELNFIKDAFERKIDISNKIMTIKNITITVNTS 279 Query: 163 PVYLQDENDQHVLTGA--VVMLRS-TIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQ 219 + + D + +L + L+S ++ +L F +V S M+ VV + Sbjct: 280 -ILVMDGKTEGILCTFQDISNLQSLEKKIRHELNKKGLIAKYTFDDVVGFSHIMEEVVGK 338 Query: 220 AQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA 279 A+K+ ++I G++GTGK++FA + H S R+ +P++A+NCA+I E+ +ESELFG+ Sbjct: 339 AKKIGQSDNTVIIYGESGTGKEIFAQSIHNISKRSKEPFVAINCAAISENLLESELFGYE 398 Query: 280 --------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHV 331 GK G FE A+GG++ LDEI +S +Q KLLR L + R+G D+ + + Sbjct: 399 EGSFTGARKGGKPGLFEIAHGGTIFLDEINSISYSLQGKLLRVLQEKETMRIGSDYVIPL 458 Query: 332 DVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADE 391 ++R+I AT + L +V++G FR+DL+YRLN+L L++PPLR+ +DI+PL + F+ A + Sbjct: 459 NIRIIAATNEELKTMVEEGRFRKDLFYRLNILELHIPPLRERKEDILPLFKYFMGDIAKD 518 Query: 392 QGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVA 451 P + L Y WPGN R+L+N R + E+ DI + Sbjct: 519 LSYEVPS---AIEEKLLAYRWPGNARELRNIAERYIIF---KEI---DIDSKEIHKNPSN 569 Query: 452 VGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLR 502 + D++ +L EI E V+ L + ++A LG+S TA+ K++ Sbjct: 570 IENDSICINLREINRYVEEKVIEMLVNQGMTKTEIANILGISRTALWKKIK 620 >UniRef50_A4IJQ7 Sigma-54-dependent transcriptional activator n=5 Tax=Geobacillus RepID=A4IJQ7_GEOTN Length = 689 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 132/470 (28%), Positives = 219/470 (46%), Gaps = 31/470 (6%) Query: 65 TDVRTVPWMPSEREH-----LALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDR 119 D+ + ++ E E L +++A + + +D + N LF + Sbjct: 221 QDISEIEFISHELETVKQIVNELQTVMDAASDGIAIIDRHGGIVRQNEKWAALFPSMEHQ 280 Query: 120 LRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAV 179 +++ + +S S G ++ P+ ++ E L V Sbjct: 281 RVPAPLERVVR-----QAFDSCQSCSMLHQGAETGNTLIVSAVPI-IEKEGQAERLVLYV 334 Query: 180 VMLRSTIRMGRQLQNVAA---QDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDT 236 + ++ +L+ ++ +P M H+V A++ A + +L+TG++ Sbjct: 335 KDMTEMEQLRVELEETKRLLHTLSQKEDGLIYRAPAMAHMVNIAKQAAAVDVTVLLTGES 394 Query: 237 GTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFE 288 GTGK+ A + S R+ +P++ +NC +IPE +ESELFG+ +GKKG+FE Sbjct: 395 GTGKEELANFIWRQSARSNRPFVKVNCGAIPETLMESELFGYEAGAFTGAVKKGKKGYFE 454 Query: 289 QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQ 348 QA+GG++ LDEI E+ R+Q KLLR L R+G + +DVRVI AT K L ELV Sbjct: 455 QADGGTIFLDEISEIPLRLQVKLLRVLQSMEIVRLGAEAPKQIDVRVIAATNKPLEELVT 514 Query: 349 KGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLT 408 G FR DL+YRLNV+ + +PPLRD +DI L + + RFA++ P + Sbjct: 515 AGRFRADLFYRLNVMPIVIPPLRDRKEDIPLLVDHYRKRFAEKYQKPLV-FTDRALEAMM 573 Query: 409 RYAWPGNVRQLKNAIYRALTQLDGYELRPQDI-----LLPDYDAATVAVGEDAMEGSLDE 463 Y WPGNVR+L NA+ R + + L P + VA+GE L + Sbjct: 574 DYHWPGNVRELVNAVERMFVTATSSIVDEDQVAKWLHLEPSPTISPVAIGEII---PLKQ 630 Query: 464 ITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKKNEE 513 + ER ++ + + R+ AK LGV + + K ++Y + E+ Sbjct: 631 AVAEVERQLMIKALNKARTYRQAAKLLGVDASTLVRKAQKYKIKSLGGED 680 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 17/132 (12%), Positives = 49/132 (37%), Gaps = 12/132 (9%) Query: 76 EREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFL 135 + + A+ A ++S+D + ++ NP + ++ + ++ L Sbjct: 121 QLRLKHMDAIFNAAHNGIISIDAEGRITSINPPAEKMARTTKEEAIGRFLTDVVIPSGLL 180 Query: 136 RWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNV 195 + + + H E + + ++ +P+ D+ + GAV + + + Sbjct: 181 DVVRTG--EGHTEKYRVGKRIYITNRSPII-----DEGQVVGAVGVFQDISEI-----EF 228 Query: 196 AAQDVSAFSQIV 207 + ++ QIV Sbjct: 229 ISHELETVKQIV 240 >UniRef50_Q89W03 Transcriptional regulatory protein n=1 Tax=Bradyrhizobium japonicum RepID=Q89W03_BRAJA Length = 480 Score = 457 bits (1178), Expect = e-127, Method: Composition-based stats. Identities = 141/465 (30%), Positives = 213/465 (45%), Gaps = 32/465 (6%) Query: 74 PSEREHLALSALLEALP---EPVLSVDMKSKVDMANPASCQLFGQKLD-RLRNHTAAQLI 129 P+ A+ L E L E +++D +V N G + ++I Sbjct: 11 PAYIRARAMETLFERLEHLCEGAIAIDRSGRVVYVNEKYVTAMGLSHESEALGRPIEEVI 70 Query: 130 NGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDEN--------------DQHVL 175 R +E+ + + + G+ ++ P+ + N L Sbjct: 71 PNSLMRRVVETGEPIILDI-MELGGEQLVVTRMPIEDEKGNIIGAIGFVLYDRLEGLKPL 129 Query: 176 TGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGD 235 G V L + +R+ R+ + A F V + + E A + A S +L+TG+ Sbjct: 130 LGRVAQLENDLRLARRQLSHARAARFTFDDYVGATAGIAQAKELAARAARQSVTVLLTGE 189 Query: 236 TGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAP--------EGKKGFF 287 TGTGK++ A A H AS RA KP++++N A+IP+ +ESE FG AP +G+ G F Sbjct: 190 TGTGKEMLAQAIHNASARAEKPFVSVNVAAIPDTLIESEFFGAAPGAYTGADRKGRDGKF 249 Query: 288 EQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELV 347 A+GG++ LDEIGEM ++QAKLLR L + +G D VDVRVI AT +L + V Sbjct: 250 RIADGGTLFLDEIGEMPLQLQAKLLRVLQEREIEPLGSDKVTRVDVRVIAATNVDLHKRV 309 Query: 348 QKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVL 407 +G FR DLYYRLNVL++ LPPLR C D+ + + + ++ L Sbjct: 310 SEGTFRADLYYRLNVLSIELPPLRHCLDDLPEICGRLLEDISASGDYLNARITPSGLAAL 369 Query: 408 TRYAWPGNVRQLKNAIYRALTQLDGYELRPQDI--LLP--DYDAATVAVGEDAMEGSLDE 463 RY WPGNVR+L+N + RAL D L D +LP T + E Sbjct: 370 ARYGWPGNVRELRNILERALILSDSGRLTSDDFDRILPVGAETVPTAPSRPAGLVLPYAE 429 Query: 464 ITSRFERSVLTQLY-RNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 + FE+ L Q + + AK L +S KL ++GL+ Sbjct: 430 AEAEFEKHTLEQALAASNGQISEAAKMLQISRATFYKKLAKFGLA 474 >UniRef50_Q1Q6P9 Similar to Sigma-54 dependent transcriptional regulator n=2 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q6P9_9BACT Length = 512 Score = 457 bits (1178), Expect = e-127, Method: Composition-based stats. Identities = 116/476 (24%), Positives = 223/476 (46%), Gaps = 52/476 (10%) Query: 83 SALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHT---------AAQLINGFN 133 ++++ L V+ +D + + N ++ + FG ++ +L N Sbjct: 35 KSIIDNLDSDVIILDKDLNIVLMNKSAERTFGVSFHEVKGTNYLALRLRSIEQELARNLN 94 Query: 134 FLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTI-RMGRQL 192 + + + + + + + + + D VL G + + + R+ +++ Sbjct: 95 NVLKTKKAFTIKELQIISPDKVTHFFDQSCIPILD--GGGVLQGVLSISKDVTKRVYKEI 152 Query: 193 Q-------------------------NVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLS 227 Q + ++ +F ++ S M+++ + +K++ Sbjct: 153 QYQESQKMLKALFQELEVKNTTIRSLQTSLRERYSFHSLIGKSYLMQNIYDLIEKVSQTD 212 Query: 228 APLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH-------AP 280 + +LITG+TGTGK+L A A H S R +A+NCA++PE +ESELFGH A Sbjct: 213 STVLITGETGTGKELVARAIHYNSHRKDYNLVAVNCAALPETLLESELFGHVKGSFTGAI 272 Query: 281 EGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQ 340 KKG FE A+ G++ LDEIGE+S Q KLLR L + RVG++ + VD+R+I AT Sbjct: 273 RDKKGKFELADKGTIFLDEIGELSIPTQVKLLRVLQERYIERVGDEKTIKVDIRIIAATN 332 Query: 341 KNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLA 400 ++++EL++KG FR+DL+YRLN++++ LP L++ DI L F+ +F ++ Sbjct: 333 QDILELIEKGTFRKDLFYRLNIISIRLPSLKERTDDIPLLVNHFIEKFNIRFKKNINGIS 392 Query: 401 ADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGS 460 + L Y+WPGN+R+L+ I +A+ + + ++ + + + G Sbjct: 393 PNALRKLLAYSWPGNIRELEGVIEKAVLLEESETIENIELPTDHSATTNLCLPKPLNAGP 452 Query: 461 -------LDEITSRFERSVLTQL-YRNYPSTRKLAKRLGVSHTAIANKLREYGLSQ 508 L + ER + +++ +A G++ I NK++++ L + Sbjct: 453 DISSYEDLQKRLDMLEREYFVSVFQKHHGRIGSIAACTGLNRRTILNKMKKFSLKK 508 >UniRef50_A6EHB3 Sigma-54-dependent transcriptional regulator n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHB3_9SPHI Length = 664 Score = 457 bits (1178), Expect = e-127, Method: Composition-based stats. Identities = 126/341 (36%), Positives = 189/341 (55%), Gaps = 10/341 (2%) Query: 180 VMLRSTIRMGRQLQNVAAQDV--SAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTG 237 + R + G + AQD AF +IV SP+M+ V ++A +A +LI G+TG Sbjct: 324 LRYRQELAAGTAFFPLTAQDRLEYAFPEIVGGSPQMQEVFNLMGQVAPSTATVLILGETG 383 Query: 238 TGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQA 290 GK+L A A HQAS RA + + +NCA+IP + +ESELFGH A + + G FE A Sbjct: 384 VGKELIAGAIHQASDRAERQMVRINCAAIPANLIESELFGHEKGSFTGATDRRTGKFELA 443 Query: 291 NGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKG 350 + ++ LDEIGE+S +Q KLLR L + F R+G + VDVRVI AT +NL++ V+ G Sbjct: 444 DQSTIFLDEIGELSLDLQVKLLRVLQEKEFERIGGSGTISVDVRVIAATNRNLLDEVEAG 503 Query: 351 MFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRY 410 FR DLYYRLNV ++LP LRD DI L F+ R+ + G + + + + +Y Sbjct: 504 RFRMDLYYRLNVFPISLPSLRDRRADIPLLANFFLERYKMKSGKKISGFSQKVMSAMMKY 563 Query: 411 AWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFER 470 WPGN+R+L++ I R + +G +R DI AT G+ ++ ++ + Sbjct: 564 RWPGNIRELEHLIERQVILTEGTLIRDLDIPAAHQVMATDGSGQTEIK-TIAQNERDHIF 622 Query: 471 SVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKKN 511 SVL AK LGV T + +K+++ GLS++ + Sbjct: 623 SVLRLCNGKISGKNGAAKLLGVPATTLNSKIKKLGLSRQHH 663 >UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=A7HIM1_ANADF Length = 495 Score = 457 bits (1178), Expect = e-127, Method: Composition-based stats. Identities = 133/321 (41%), Positives = 192/321 (59%), Gaps = 11/321 (3%) Query: 204 SQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNC 263 +V S M+ V++Q +K+A A +L+ G++GTGK+L A A H ASPR +P+++++C Sbjct: 173 HGLVGSSEPMRRVLDQVRKVASTGATVLVLGESGTGKELVARAIHDASPRREQPFVSISC 232 Query: 264 ASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLN 316 A+IPE +ESELFGH A K G FE ANGG++ LDE+GE+ +Q KLLR L Sbjct: 233 AAIPEGLLESELFGHEKGAFTGAIRRKLGRFELANGGTLFLDEVGEIPHAVQVKLLRVLQ 292 Query: 317 DGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQD 376 + F RVG + V VDVRV+ AT +NL ++V+ G FREDLYYRLNV+ + LPPLRD P D Sbjct: 293 ERQFERVGGEETVEVDVRVVSATNRNLAQMVESGRFREDLYYRLNVVPILLPPLRDRPGD 352 Query: 377 IMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELR 436 + L FVAR A LA + +L R+ WPGNVR+L+N I +AL +G +R Sbjct: 353 VEELARFFVARLAPRMSRAVTGLAPEALELLRRHRWPGNVRELENVIEQALVFAEGELVR 412 Query: 437 PQDILLPDYDAATVA-VGEDAMEGSLDEITSRFERSVLTQLYRN-YPSTRKLAKRLGVSH 494 P+D+ A + + + SL +I ER ++ Y + A+ LG+ Sbjct: 413 PRDLPEGVRKAPPAPSLPVPSGDRSLTDILEDLERQLILAAYEKARGVKAETARLLGIKP 472 Query: 495 TAIANKLREYGLSQ--KKNEE 513 +A+ KL +YG+ + +K EE Sbjct: 473 SALYYKLEKYGIVKAGEKAEE 493 >UniRef50_Q67RK7 Sigma-54-dependent transcriptional regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67RK7_SYMTH Length = 465 Score = 457 bits (1178), Expect = e-127, Method: Composition-based stats. Identities = 140/452 (30%), Positives = 231/452 (51%), Gaps = 26/452 (5%) Query: 79 HLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFL--- 135 + ALL+ L E VL+V ++ + N A QL G RL + A L +G ++ Sbjct: 16 ETVVRALLDGLAEGVLAVAPDGRIRLVNGAMAQLLGTPRARLLDRRPADLEDGDKWVPPV 75 Query: 136 --RWLESEPQDSHNEHVVINGQNFLMEITPVY-------LQDENDQHVLTGAVVMLRSTI 186 R LE+ + + + G+ + P+ +D + L V + Sbjct: 76 LRRCLETGERQAM--VLERAGRRLALTAVPLPEGWVLATARDITELDRLERQVERMTQER 133 Query: 187 RMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYA 246 R + +++V S M+ V++ +++A + + +L+ G++G GK + A Sbjct: 134 ERYRHELAGLRAGQAGRAEVVGSSLAMQRVMDLIRRVAPVDSTILLLGESGVGKGVLAAE 193 Query: 247 CHQASPRAGKPYLALNCASIPEDAVESELFGHAP--------EGKKGFFEQANGGSVLLD 298 H+ SPR P++ ++CA++P +ESELF ++P EGK G EQA+GG++ +D Sbjct: 194 IHRLSPRRSGPFVRIDCAALPGSLLESELFDYSPGSFTGARREGKPGLIEQAHGGTLFID 253 Query: 299 EIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYY 358 EIG++ +Q KLL + + R+G VD+R+I AT ++L +V +G FR DLYY Sbjct: 254 EIGDVPLELQVKLLHVIQERRIIRLGAVTPTAVDIRIIAATHRDLEAMVAEGRFRADLYY 313 Query: 359 RLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQ 418 RLNV+ + +PPLR+ P+DI L F+ RF V R L + L Y+WPGNVR+ Sbjct: 314 RLNVVPVKIPPLRERPEDIPVLARTFLDRFCARYRVER-TLTPEAVERLVAYSWPGNVRE 372 Query: 419 LKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYR 478 L+N + R + LD E+RP+ + LP V V E L E + E ++ + YR Sbjct: 373 LENLVERLVVTLDEREIRPEHLPLPAPGGPPVQVRE---IVPLKEAVAALELELVGEAYR 429 Query: 479 NYPSTRKLAKRLGVSHTAIANKLREYGLSQKK 510 + S+ K+ + LG+ T A K+RE+ Q++ Sbjct: 430 RFGSSVKVGRALGIHQTTAARKIREWKARQER 461 >UniRef50_B8DQ12 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DQ12_DESVM Length = 474 Score = 457 bits (1178), Expect = e-127, Method: Composition-based stats. Identities = 132/459 (28%), Positives = 211/459 (45%), Gaps = 35/459 (7%) Query: 85 LLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQD 144 + + LP +L D + AN A +L G++ + ++I + + + Sbjct: 17 IFDHLPMGILYCDASYVIRFANKAYAELLGKRPHDIIGRNITEVIPSSRAPEVMTTGQAE 76 Query: 145 SHNEHVVING----QNFLMEITPV--------------YLQDENDQHVLTGAVVMLRSTI 186 + I G Q ++ PV D ++ L+ + L + Sbjct: 77 -MGDLCSIPGPRADQKLVVNRIPVRDAAGALVGMISQAIFNDPSELKRLSNKIEQLGHKL 135 Query: 187 RMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYA 246 ++ + + + S M + ++ + A + AP+L+ G TGTGK+L A+A Sbjct: 136 SQYKRRMAATLHAQYSLASLKGESASMHQIKDRLRSYARMDAPVLVLGATGTGKELAAHA 195 Query: 247 CHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGFFEQANGGSVLLD 298 H S RA P +++NCA+IP+D ESELFG+ GK G E A+GG++ LD Sbjct: 196 LHAESTRAAGPLVSINCAAIPKDLFESELFGYVRGAFSGAHHSGKMGQIELADGGTLFLD 255 Query: 299 EIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYY 358 EIG+M + QAKLLR L T RVG VD R+I AT +N+ ++VQ G FREDLYY Sbjct: 256 EIGDMPLQAQAKLLRVLESRTICRVGAVTAEPVDFRLIAATNRNIKDMVQAGTFREDLYY 315 Query: 359 RLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQ 418 R+N + +P LRD +DI+PL F+AR G + L + WPGN+RQ Sbjct: 316 RINTFIIEIPSLRDRKEDILPLAHHFLAR----MGHEGVTFTPAAVSALQSFEWPGNIRQ 371 Query: 419 LKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAME---GSLDEITSRFERSVLTQ 475 L NAI A T +G + + T V + L I + E +++ Sbjct: 372 LHNAILHAATMREGSAIDVCALPPEIRPVHTSPVAPCPLPQDRSDLAGILAHNEAALIEN 431 Query: 476 LYR-NYPSTRKLAKRLGVSHTAIANKLREYGLSQKKNEE 513 R + + A LGVS + K++++G+ ++ + Sbjct: 432 ALREQGGNVTRAASALGVSRATLYEKMKKHGVHAVRSRD 470 >UniRef50_A0LFR7 Transcriptional regulator, NifA subfamily, Fis Family n=7 Tax=Deltaproteobacteria RepID=A0LFR7_SYNFM Length = 508 Score = 457 bits (1177), Expect = e-127, Method: Composition-based stats. Identities = 124/344 (36%), Positives = 191/344 (55%), Gaps = 10/344 (2%) Query: 175 LTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITG 234 L G VV R+ +L+ + A+ + I+ S ++ V+ ++A + +LI+G Sbjct: 160 LLGKVVHFRAVEEENSRLRRMLAEARRPTTNIIGRSKVIQEVLRAIDQVADTNTTVLISG 219 Query: 235 DTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGFF 287 +TGTGK+L A A H S RA P + +NCA++P+ +ESELFGH A ++G F Sbjct: 220 ETGTGKELVARAIHDNSRRAKGPLVQVNCAAMPDTLLESELFGHEKGAFTGAVTRRRGRF 279 Query: 288 EQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELV 347 E+A GG++ LDE+GE+SP QAKLLR L + F+ +G V VDVRVI A+ K+L + V Sbjct: 280 EEAQGGTIFLDEVGELSPIAQAKLLRVLQEREFQPLGSSRTVKVDVRVITASNKDLEKEV 339 Query: 348 QKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVL 407 G FR DLYYRLNV + LPPLR+ DI+ L + FV ++A E ++ +L Sbjct: 340 ALGTFRSDLYYRLNVFPIFLPPLRERGPDILLLADYFVLKYARELDKDVKRITTSAIDML 399 Query: 408 TRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSR 467 Y WPGNVR+L+N I RA+ G + LP ++ G L+ + S Sbjct: 400 MCYHWPGNVRELENCIERAVLLAGGNAVDSWH--LPPTLQMKPVGMQNVSRGKLEALVSA 457 Query: 468 FERSVLTQLYRN-YPSTRKLAKRLGVSHTAIANKLREYGLSQKK 510 FER ++T ++ + + A+ LG + + K+ +YG+ ++ Sbjct: 458 FERDLITDALKDVRGNQSQAARLLGTTKRIVQYKVEKYGIDPRR 501 >UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=B8FEY3_DESAA Length = 460 Score = 457 bits (1177), Expect = e-127, Method: Composition-based stats. Identities = 122/357 (34%), Positives = 202/357 (56%), Gaps = 14/357 (3%) Query: 164 VYLQDENDQHVL-TGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQK 222 ++ +N+Q +L + + ++ R L+N D +F I+ SP M ++ + K Sbjct: 100 IWKPFQNEQLILFVKQALAMYRVVQENRLLKNELG-DRYSFGNIIGKSPAMVNIFDTIVK 158 Query: 223 LAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPEG 282 +A +A +LI G++GTGK++ A + H S R P++A+NCA++ E +ESELFGH Sbjct: 159 VAPTNATVLIQGESGTGKEMVAKSIHFNSHRKDAPWVAVNCAALAESILESELFGHEKGA 218 Query: 283 -------KKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRV 335 KKG FE A+GG++ LDEIGE+S +Q KLLR L + TF RVG + VD+R+ Sbjct: 219 FTGAAAMKKGRFELADGGTLFLDEIGEISSSLQVKLLRVLQEKTFERVGGVKPIEVDIRL 278 Query: 336 ICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFAD--EQG 393 I AT ++L + V+ FREDL+YRLNVL + LPPLR+ +DI L + F+ ++A Sbjct: 279 IAATNRDLKKEVENSAFREDLFYRLNVLPIQLPPLRERQKDIPLLVDHFLQKYASGPSGE 338 Query: 394 VPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDIL--LPDYDAATVA 451 K+ D++ + YAWPGNVR+L+N I RA+ + + D+ L + T+ Sbjct: 339 SRVRKVHPDVHRLFQEYAWPGNVRELENVIERAIILCNSDAISVNDLPRELTRSVSNTLH 398 Query: 452 VGEDAMEGSLDEITSRFERSVLTQLYRNYPS-TRKLAKRLGVSHTAIANKLREYGLS 507 + ++ +L E S E++++ + + A+ LG+ + + K++++GL Sbjct: 399 MEGIPVDATLYETLSMVEQAMIKRAMLMSDNVQSHAAQILGIGKSGLNQKIKKFGLD 455 >UniRef50_A0RFE6 Sensory box sigma-54 dependent DNA-binding response regulator n=18 Tax=Bacillus cereus group RepID=A0RFE6_BACAH Length = 579 Score = 457 bits (1176), Expect = e-127, Method: Composition-based stats. Identities = 128/458 (27%), Positives = 218/458 (47%), Gaps = 34/458 (7%) Query: 83 SALLEALPEPVLSVDMKSKVDMANPASCQLFGQK-LDRLRNHTAAQLINGFNFLRWLESE 141 + L L E +L V+ + V+ + + + G + +++ +++ Sbjct: 123 ESALNLLSECILGVNEQGIVNFLSGSYAKFLGIDDPNEAVGKHCTEVVENTRMHIIVKTG 182 Query: 142 PQDSHNEHVVINGQNFLMEITPV-------------YLQDENDQHVLTGAVVMLRSTIRM 188 + + I+ +N + P+ D L + + S + Sbjct: 183 QTEIGHIQ-RISNRNIIATRIPIVKDGKIIGAIGKIMFHDIQQFKALGDQISEMESKLSY 241 Query: 189 GRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACH 248 + + +F I+ S KMK V A K++ + +LI G++GTGK+LFA+A H Sbjct: 242 YQTELQRLQEGRLSFQSIIGESAKMKEVKMMALKVSKSRSTVLIRGESGTGKELFAHAVH 301 Query: 249 QASPRAGKPYLALNCASIPEDAVESELFGHAPEG--------KKGFFEQANGGSVLLDEI 300 +ASPRA ++ LNCA+IP D +E+ELFG+ K G E A G++ LDEI Sbjct: 302 RASPRASGTFIRLNCAAIPRDLLEAELFGYEEGAFTGAKKGGKPGKIELAEKGTLFLDEI 361 Query: 301 GEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRL 360 G+MS MQ KLLR L + R+G VDVR I AT +NL E+VQ+G FREDLYYRL Sbjct: 362 GDMSLDMQVKLLRVLQEKEIERIGGTKIQKVDVRFIAATHRNLREMVQRGEFREDLYYRL 421 Query: 361 NVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLK 420 NV + +PPLR+ +D++ +TE + + E G + + + WPGN+R+L+ Sbjct: 422 NVFEIAIPPLRERKEDMIHITEFLIKKLNGELGSNVISFDERVREIFMEHDWPGNIRELE 481 Query: 421 NAIYRALTQLDGYELRPQDILL----------PDYDAATVAVGEDAMEGSLDEITSRFER 470 N + RA+ ++G ++ + +D T+ ++ E SL E+ Sbjct: 482 NVLERAMNVIEGMIIQVHHLPAYLRKKDKEEELYHDIFTIDQKQNEGEYSLQAEVESAEK 541 Query: 471 SVL-TQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 + L + + ++ A+ LG+ ++ K+ +Y +S Sbjct: 542 RAITRALEKTAGNIKEAARLLGIHRASLYRKIEKYEIS 579 Score = 43.5 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 14/119 (11%), Positives = 43/119 (36%), Gaps = 7/119 (5%) Query: 86 LEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDS 145 L+ + + + + +N C + +K + + +I + + ++ Sbjct: 16 LQVMNNGIAVISHDGIITYSNKLFCSMLHKKETEIIGEHISTIIPDRK--KLVVNQNDSL 73 Query: 146 HNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFS 204 + Q ++ VY D G++ +L + + L+++ ++ SA + Sbjct: 74 YRYECKSGNQVVIVNECRVYKDGTED-----GSIAILERKGKSIQSLESIISRYESALN 127 >UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulator n=7 Tax=Myxococcales RepID=Q1D6H5_MYXXD Length = 474 Score = 457 bits (1176), Expect = e-127, Method: Composition-based stats. Identities = 126/366 (34%), Positives = 188/366 (51%), Gaps = 26/366 (7%) Query: 165 YLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLA 224 Y+ DQ L+ V T R+ DV A + I+ S ++ V + K+A Sbjct: 99 YITKPFDQAELSSVVAKAAKTNESARR---SVRPDVKARAAIIGDSSTIQEVYKIIDKVA 155 Query: 225 MLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH------ 278 + +LITG++GTGK+L A A H AS R KP++ +NCA+IP +ESELFG+ Sbjct: 156 DTPSTVLITGESGTGKELIATALHGASSRRDKPFIKINCAAIPHTLLESELFGYERGAFT 215 Query: 279 -APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVIC 337 A K G FE A+ G++ LDEIGE+ MQ KLLR + +G F RVG VDVR++ Sbjct: 216 GAVTSKPGRFELADEGTLFLDEIGEIPVEMQVKLLRAIQEGEFERVGGIKTTRVDVRLVA 275 Query: 338 ATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRP 397 AT ++L ++ G FR+DLYYRL V+ ++LP LR+ D+ L FV ++ Sbjct: 276 ATNRDLQAEIEAGRFRKDLYYRLAVVPISLPALRERRSDVPMLARHFVEKYNRRLNKKIE 335 Query: 398 KLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGED-- 455 +A D +L YAWPGN+R+L+N I R L DG + +D+ P V G + Sbjct: 336 GIADDAMALLQGYAWPGNIRELENLIERVLLFADGPLITARDLPEPVRQGTGVQAGANLA 395 Query: 456 ---------AMEGSLDEITS----RFERSVL-TQLYRNYPSTRKLAKRLGVSHTAIANKL 501 E L +I ER ++ +L + + A+ L +S ++ K+ Sbjct: 396 SAVASIDVPTGEVGLKDIVRMKAAELERDLIVKKLEETGGNVTRAARLLQISRKSLQTKM 455 Query: 502 REYGLS 507 +E+GL Sbjct: 456 KEFGLR 461 >UniRef50_A5CY60 Transcriptional activator of acetoin/glycerol metabolism n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5CY60_PELTS Length = 692 Score = 456 bits (1175), Expect = e-127, Method: Composition-based stats. Identities = 129/457 (28%), Positives = 227/457 (49%), Gaps = 28/457 (6%) Query: 73 MPSEREHL--ALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLIN 130 + E+E + ++++++ E ++++D + ++ + N + +L G K + N A ++ Sbjct: 239 LRREKELAGKYIESIVDSISEGLVALDGQGRITVLNRTAGELLGLKPQDVLNQPADAVLG 298 Query: 131 GFNFLRWLESEPQDSHNEHVVIN----GQNFLMEITPVYLQDENDQHVLTGAVVMLRSTI 186 + + + N +V N + + + PV N + + R + Sbjct: 299 QHSTVVEAFRSGEALLNRELVFNCKNKQRTAIGNVVPVANNRANGVLAVFKGLSHARGFV 358 Query: 187 RMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYA 246 + + F + P+ VV A++ A L + +LI G++GTGK++FA A Sbjct: 359 K-----NMAGFKAYFNFEDLKGSGPRFAQVVNLARQAAALPSNVLILGESGTGKEMFAQA 413 Query: 247 CHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLD 298 H AS + P++ +NCA+IP + +ESELFG+ EG+ G F+ A G++ LD Sbjct: 414 IHNASSSSNGPFVGINCAAIPAELIESELFGYEGGAFTGAKREGQPGKFQLAAHGTLFLD 473 Query: 299 EIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYY 358 E+ MS MQAKLLR L + F R+G E+ ++ R+I A+ K+L E V++G FREDL Y Sbjct: 474 EVNAMSMTMQAKLLRVLQNRCFTRIGGCVEIPLEARIIAASNKDLWEEVRQGNFREDLLY 533 Query: 359 RLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQ 418 RLNV+T+ +PPLR+ D++ L E F + + ++ ++ Y WPGNVR+ Sbjct: 534 RLNVVTIEIPPLRERKDDLVHLIEHFCREHSKKLKFEF-TISEPARKLMMAYHWPGNVRE 592 Query: 419 LKNAIYRALTQL---DGYELRPQDILL-PDYDAATVAVGEDAMEGSLDEITSRFE----R 470 L+N I R + + QD+L P + A A+E + E R Sbjct: 593 LENVIERCAVMALSRSSHSIEEQDLLSYPGIRKSLEADKNPAVEVPPPQFDDNLESLEKR 652 Query: 471 SVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 +V L + + + A RLGV+ + K+++YG++ Sbjct: 653 AVEEALKQTGGNITRAAGRLGVTRKTLYRKIKKYGIA 689 >UniRef50_C5JBC1 Sensory box protein/sigma-54 dependent DNA-binding response regulator n=1 Tax=uncultured bacterium RepID=C5JBC1_9BACT Length = 584 Score = 456 bits (1175), Expect = e-127, Method: Composition-based stats. Identities = 137/531 (25%), Positives = 238/531 (44%), Gaps = 65/531 (12%) Query: 32 EIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREH------------ 79 E P +I L L+ +S S + AG D P +P + H Sbjct: 70 EYFPEVKIILIADSLDAKSVQSALR-----AGSFDYLAKPVLPLKLAHVINLALEHSRVQ 124 Query: 80 -------LALSALLEALPEPVLSVDMKSKVDMANPASCQLF-------GQKLDRLRNHTA 125 + A+ + + + ++++D + ++ N A+C+L Q + Sbjct: 125 NEKKMLVNRMEAVFQGVDDAIVAMDNEWRIIQINDAACKLLKLNHSSMNQSFQNEISWLF 184 Query: 126 AQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRST 185 ++ + + + NG ++ T D G ++++R Sbjct: 185 HKVEPLLRQAQEEWLGKRAVCMISMHENGMERILNCTASLFHDPIQNA--QGIILVVRDE 242 Query: 186 IRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAY 245 R+ + + + +V S M+ V E ++LA + + +LITG+TGTGK+L A Sbjct: 243 SRLAMLERETQTRQ--GWHGLVGSSLPMQEVYELIERLAEVDSTVLITGETGTGKELVAR 300 Query: 246 ACHQASPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLD 298 A H SPR+ ++A+NCA++P +ESELFGH A K G F+ A+GG++ LD Sbjct: 301 ALHAISPRSQHSFVAVNCAALPVGLMESELFGHVRGAFTNAVRDKPGRFKMADGGTIFLD 360 Query: 299 EIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYY 358 EIG++ MQ +LLR L + TF VG+++ + V+VRV+ AT +NL E VQ+G+FREDLYY Sbjct: 361 EIGDLPLDMQVRLLRVLQEQTFEAVGDNNPIQVNVRVVAATHRNLRERVQEGLFREDLYY 420 Query: 359 RLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQ 418 RL V+ + LP LR+ D+ L + F+ +F + ++ T + + WPGNVR+ Sbjct: 421 RLKVVEMRLPSLREHKTDLPMLIDHFLKKFNARMKRSIKGITDEVLTAIMEHDWPGNVRE 480 Query: 419 LKNAIYRALTQLDGYEL----RPQDIL------------LPDYDAATVAVGEDAMEGSLD 462 L++ + A+ L P D + G + G Sbjct: 481 LEHTLEHAMVVAPQSILAWSNLPHDFRNRYFPVMKLLQQPSHQRGRPLKNGHPSGRGPDR 540 Query: 463 EITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKKNEE 513 E +L L + + A RL +S + + +++ GL+ + ++ Sbjct: 541 ET-------ILQTLEDSRWQLQIAATRLQISRSTLWRRMKSMGLNNPEKKQ 584 >UniRef50_Q2LXW8 Nif-specific regulatory protein with sigma 54 interaction domain n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LXW8_SYNAS Length = 513 Score = 456 bits (1175), Expect = e-127, Method: Composition-based stats. Identities = 117/344 (34%), Positives = 189/344 (54%), Gaps = 10/344 (2%) Query: 175 LTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITG 234 L V +R+ R+L+++ + S+I+ S M+ V ++A + +LI G Sbjct: 159 LIAKSVHIRALEEENRRLRHMLGRSTVPDSEIIGHSRVMQEVFGLIAQVADSNTTVLING 218 Query: 235 DTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPEG-------KKGFF 287 +TGTGK+L A A H S R P + +NCA++P+ +ESELFGH ++G F Sbjct: 219 ETGTGKELVARAIHDRSSRCKGPLIQVNCAAMPDTLIESELFGHEKGAFTGALHARRGRF 278 Query: 288 EQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELV 347 E+A+GG++ LDE+GE+S QAKLLR + + F+ +G V VDVR+I AT +NL E V Sbjct: 279 EEAHGGTIFLDEVGELSAAAQAKLLRVIQEKKFQPLGASRVVSVDVRIIAATNRNLEEDV 338 Query: 348 QKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVL 407 G FR DLYYRLNV + LPPLR+ DI+ L + FV ++ G +++ + Sbjct: 339 AVGHFRADLYYRLNVFPIYLPPLRERGSDIILLADYFVLKYNKIMGKSVKRISNAVLEAF 398 Query: 408 TRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSR 467 ++WPGNVR+L+N I RA+ G + + + LP GE G + + Sbjct: 399 LSHSWPGNVRELENCIERAVLLATGDSI--ETLHLPPSLQIRSREGEKKESGKFNAMIES 456 Query: 468 FERSVL-TQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKK 510 ER+++ L ++ + + A+ LG + I K++++G+ ++ Sbjct: 457 QERAMIVDALKESHGNQSQAARILGTTKRIIQYKIQKFGIDPRR 500 >UniRef50_A9HYL1 Propionate catabolism operon regulator n=3 Tax=Bordetella RepID=A9HYL1_BORPD Length = 640 Score = 456 bits (1174), Expect = e-127, Method: Composition-based stats. Identities = 139/455 (30%), Positives = 221/455 (48%), Gaps = 26/455 (5%) Query: 62 AGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLR 121 ++ V + + R L+ +L +L + VL+VD ++ NP+ +L + Sbjct: 188 EDAIELARVARLEAGRYE-QLNGVLHSLQDAVLAVDRDHRIIAVNPSMQRLLDHDAAAMV 246 Query: 122 NHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVM 181 +L L++ +S + + G+++L P+ ++ + GA + Sbjct: 247 GQPLDRLRPELTLRPTLDTGQPESAG-LLRLGGRDWLANRMPI-----RERGAVVGAALT 300 Query: 182 LRSTIRMGR-------QLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITG 234 L R+ Q + F++++ SP V A++ A +LI G Sbjct: 301 LYDAGRIHEADTSLRVQQRRRQNTAKYQFAELIGRSPPFLRAVRTARRYAQTDLTVLIAG 360 Query: 235 DTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGF 286 ++G GK+LFA A H S RA +P++A+NCAS PE +ESELFG+ GK+G Sbjct: 361 ESGVGKELFAQAIHNESRRADRPFVAVNCASFPESLLESELFGYEEGAFTGSRRGGKRGL 420 Query: 287 FEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVEL 346 FE A+ G++ LDEIG+M +Q++LLR L + R+G + VDVR+I AT + L ++ Sbjct: 421 FEAAHTGTLFLDEIGDMPLPLQSRLLRVLQEREVTRLGATAAIPVDVRIIAATHQPLSDM 480 Query: 347 VQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRP--KLAADLN 404 V + FR+DLYYR+N L L +PPLR+ P DI PL E + R G P L A Sbjct: 481 VAQRRFRQDLYYRINTLRLEVPPLRERPDDIQPLLETLIDRCLRRLGAPLQAAGLVAPWL 540 Query: 405 TVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEI 464 L RYAWPGNVR+L+N R L Y D+ + E + DE Sbjct: 541 PRLRRYAWPGNVRELENISERMAVFLMQYP-HAADVDHDALRHDCPELFEAGAAVAADEG 599 Query: 465 TSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIAN 499 S+ +R+ L L + ++ A+RLG+S + + Sbjct: 600 RSQRDRA-LRALEACGGNRQEAARRLGISRSTLWR 633 >UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidobacteria RepID=Q1INE5_ACIBL Length = 459 Score = 456 bits (1174), Expect = e-127, Method: Composition-based stats. Identities = 123/394 (31%), Positives = 199/394 (50%), Gaps = 18/394 (4%) Query: 123 HTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVML 182 +L+ G + + + + + P L E H+++ A+ Sbjct: 69 RKLHELVPG--LIVIMMTGYASVETAVATLRNGAYDYITKP--LDPEETAHLVSKALAHK 124 Query: 183 RSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDL 242 R+ R + + + A +V S MK + + + +A A +LITG++GTGK++ Sbjct: 125 RTEQENVRLKEQI---EEHAHVDLVWRSDAMKKINDAIETVAPTDATVLITGESGTGKEV 181 Query: 243 FAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE-------GKKGFFEQANGGSV 295 A A H S R P + ++C ++ E +ESELFGH KKG FE A GG+V Sbjct: 182 VARAIHALSTRRFHPMVPVHCGALTETLLESELFGHEKGAFTGAQYRKKGKFEVAEGGTV 241 Query: 296 LLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFRED 355 LDEIG++S + Q LLR L + RVG + + VD R++ AT K+L +L+++G FR D Sbjct: 242 FLDEIGDISLKTQTDLLRVLQEREIVRVGGNQPIKVDFRIVAATNKDLEKLIEEGHFRPD 301 Query: 356 LYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGN 415 L+YRLNV + LPPLRD +DI L F +FA++ ++A+ +L +Y WPGN Sbjct: 302 LFYRLNVFRIELPPLRDRREDIPLLVNHFTKKFAEQMNKRVTRVASPAMNMLQQYPWPGN 361 Query: 416 VRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGE-DAMEGSLDEITSRFERSVLT 474 VR+L+NA+ RA+ ELR D +L AAT++ +L++I VL Sbjct: 362 VRELENAVERAMVVAQEPELRETDFVLKVKAAATMSSTNGTGTPKTLEDIEKEHILHVLD 421 Query: 475 QLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQ 508 + + + A+ L + + +K++ YG + Sbjct: 422 E---TNWNQTRAAEMLDIDRVTLHHKIKRYGWQK 452 >UniRef50_Q8EMV1 Transcriptional regulator n=2 Tax=Bacillaceae RepID=Q8EMV1_OCEIH Length = 594 Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 120/454 (26%), Positives = 207/454 (45%), Gaps = 34/454 (7%) Query: 83 SALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEP 142 +LE+ E V VD + N A + G H ++I N + +++ Sbjct: 145 EVILESAYEGVAMVDRNGIIVEFNDAYSRFTGVDKKEAIGHPVQEIIENTNLHQTVKTGI 204 Query: 143 QDSHNEHVVINGQNFLMEITPVYLQDENDQHV---LTGAVVMLRS-------------TI 186 + I GQ ++ PV+ +E + + V L T Sbjct: 205 AERGVIQY-IQGQPMVVHRIPVWRNEELVGAIGMLIFEGVTELYQIYDRYQEKKQKMITE 263 Query: 187 RMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYA 246 + R+ + Q + QI+ S ++ + +K+A A +LITGD+GTGK+LFA + Sbjct: 264 KHSRKEDSNPGQPDNYLEQIIGQSEELTKLKRMTRKVAQTEATVLITGDSGTGKELFAKS 323 Query: 247 CHQASPRAGKPYLALNCASIPEDAVESELFGHAPEGKKGFF------------EQANGGS 294 HQ S P++ +NC +IPE ESELFG+ G F + A+ G+ Sbjct: 324 IHQLSDYKSGPFVCVNCGAIPEQLFESELFGYED----GSFTGAKRGGKKGKFKLADNGT 379 Query: 295 VLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFRE 354 + LDEIGEM MQ KLLR + + + +VG + + RV+ AT +NL +V++G FRE Sbjct: 380 LFLDEIGEMPLAMQTKLLRVIQEKEYEKVGGLTKQPLKARVVAATNRNLKVMVEEGTFRE 439 Query: 355 DLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPG 414 DLYYR+NV+ L +PPLR+ +DI L ++ + + + ++ + VL +Y W G Sbjct: 440 DLYYRINVIELYIPPLRNRERDIPLLISSYLLTICKKYNMKKKEITPEAMAVLMKYKWYG 499 Query: 415 NVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLT 474 N+R+L N I + + + + + + + + E ++ Sbjct: 500 NIRELINTIEKLVILTENDMIDYHHLPNYMKREEFTIDNRLSPIHQVKQQEHIRESELIR 559 Query: 475 -QLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 L + + K A++LG+ T + KL+++ + Sbjct: 560 LTLEQTGGNKSKAAQKLGIHRTTLYQKLKKFDME 593 >UniRef50_B8FM80 PAS modulated sigma54 specific transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=B8FM80_DESAA Length = 465 Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 120/453 (26%), Positives = 203/453 (44%), Gaps = 29/453 (6%) Query: 83 SALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQL----------INGF 132 +++ + + V+ V + + N + G + + A L G Sbjct: 11 KTVVDTIQDGVMIVSPEGTIVSVNKGFETITGYSQSEVLGQSCALLGCSSCEIARNAEGC 70 Query: 133 NFLRWLESEPQDSHNE-HVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQ 191 ++ + + +G + L+D Q + GAV + + + Sbjct: 71 HWCVMFKHGRLRRQRCALIRKDGIPVQIVKNASVLKDGEGQ--IIGAVETITDITDLTTK 128 Query: 192 LQNVAA-----QDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYA 246 +A+ F ++ S M+ + E + AP++I G++G GK+L A A Sbjct: 129 ESLIASYRQELDAQDRFYGMIGASAPMQALFELIRNAGQSDAPVIIFGESGAGKELIAKA 188 Query: 247 CHQASPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDE 299 H+A R+ PY+ +NCA++ E +ESELFGH A ++G FE A+ G + LDE Sbjct: 189 IHEAGSRSQFPYIKVNCAALNESLLESELFGHVKGSFTGAHRDREGRFEAADKGDIFLDE 248 Query: 300 IGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYR 359 IG++ Q KLLR L + RVG+ + VDVR+I AT ++L L+ KG FRED +YR Sbjct: 249 IGDLPLSTQVKLLRVLEEKVVERVGDHKPIQVDVRIISATNRDLQALISKGEFREDFFYR 308 Query: 360 LNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQL 419 +NV+ L P LR+ DI L F R + G ++ + L Y WPGNVR+L Sbjct: 309 INVIPLRAPSLRERKGDIPLLARSFFNRIRMKSGKDIHGISREAMDALANYNWPGNVREL 368 Query: 420 KNAIYRALTQLDGYELRPQDILLP---DYDAATVAVGEDAMEGSLDEITSRFER-SVLTQ 475 K+A+ A + P+ + P + D A G + +R ++ Sbjct: 369 KSALEFAFVSCHEDLIEPRHLPAPIAAEPDCAPPQPVPVQSRGPGGATLDQVKRTRLIDA 428 Query: 476 LYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQ 508 L + + A+ LG+S T++ +++ Y L+ Sbjct: 429 LTSAKGNQSEAARILGISRTSVWAQVKRYQLNP 461 >UniRef50_Q2LUG8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=6 Tax=Bacteria RepID=Q2LUG8_SYNAS Length = 456 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 122/338 (36%), Positives = 189/338 (55%), Gaps = 9/338 (2%) Query: 179 VVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGT 238 V R+ IR L+ I+ S KM + A ++A A +L+ G++GT Sbjct: 118 VAERRTLIRENEILRRQLKDQGVTTDAIIFTSQKMAALTSMAARVASSRATVLLQGESGT 177 Query: 239 GKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQAN 291 GK+L A HQ SPR+ +P + +NC ++PE +ESELFGH A + G FE+A+ Sbjct: 178 GKELLARLIHQLSPRSTRPIITVNCGALPESLIESELFGHEKGAFTGATSRRIGRFEEAD 237 Query: 292 GGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGM 351 GG++ LDEIGE++ +Q KLLRFL + F+RVG + + DVR+I AT ++L +V++ Sbjct: 238 GGTLFLDEIGELTMPVQVKLLRFLQEREFQRVGGNTNIRADVRIISATNRDLETMVKEEK 297 Query: 352 FREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYA 411 FREDLYYRLNV+ +++PPLR+ +DI L + F+ RFA E G ++++ +L +Y Sbjct: 298 FREDLYYRLNVVVMSIPPLRERREDIPALIDHFLERFAAENGKKISGISSEARDLLMKYD 357 Query: 412 WPGNVRQLKNAIYRALTQLDGYELRPQDILL-PDYDAATVAVGEDAMEGSLDEITSRFER 470 +PGNVR+L+N I RA+ + +D+ D AT + EG L E+ Sbjct: 358 YPGNVRELENIIERAVVIARNEIIYMEDLPFREDTLVATSGGVPEEGEGRLRGAIENLEK 417 Query: 471 SVLTQLYRNYP-STRKLAKRLGVSHTAIANKLREYGLS 507 ++ + A+ LG+S + KL++YGL Sbjct: 418 QMIQDAMEKAGDHQTRAAEMLGLSERMLRYKLKKYGLK 455 >UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=Q2IQM1_ANADE Length = 485 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 131/351 (37%), Positives = 189/351 (53%), Gaps = 14/351 (3%) Query: 165 YLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQ--DVSAFSQIVAVSPKMKHVVEQAQK 222 YL D + + + +R+ R N+ + + F IV +P++ V E ++ Sbjct: 110 YLVKPLDVNAVLVVLEKALEKLRLQRDTANLRERVRERYRFHNIVGDAPELHAVYEVVKR 169 Query: 223 LAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH---- 278 A A +LI G++GTGK+LFA A H+ SPRA K ++ +NCA++ E +ESELFGH Sbjct: 170 AAPTRATVLILGESGTGKELFAQALHEESPRADKAFIKVNCAALSETLLESELFGHEKGA 229 Query: 279 ---APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRV 335 A K+G FE A+GG++ LDEIG++SP +Q KLLR L F RVG + VDVR+ Sbjct: 230 FTGAIGRKEGRFELADGGTLFLDEIGDISPALQIKLLRVLQQREFERVGGTQTLKVDVRL 289 Query: 336 ICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVP 395 + AT ++L V+ G FREDLYYRLNV+ + LPPLR DI L F+ +++ G Sbjct: 290 VAATNRDLAAEVKNGRFREDLYYRLNVVAVTLPPLRQRKGDIPALVSHFIDKYSKAYGKD 349 Query: 396 RPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDIL--LPDYDAATVAVG 453 LA + + WPGNVR+L+N + RA+ G EL D+ L A G Sbjct: 350 IRGLAPGTLNAVLSHDWPGNVRELENVVERAVVLCKGSELTADDLPPTLRGPRPRERAPG 409 Query: 454 EDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREY 504 +L EI ++L L ST + A+ LG+S I +L+EY Sbjct: 410 ALIPGATLYEIERE---AILRTLEMVGGSTSRAAEILGISVRKIQYRLKEY 457 >UniRef50_B8FV05 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfitobacterium hafniense DCB-2 RepID=B8FV05_DESHD Length = 687 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 126/484 (26%), Positives = 224/484 (46%), Gaps = 24/484 (4%) Query: 42 NFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSK 101 + ++ S +MA I + +++ + L A L + + V++V+ Sbjct: 212 DMQNIQAHSLGWVMAMGYAIENLLELKKQNN-SMTLMNGTLEATLSLIDDGVITVNENCY 270 Query: 102 VDMANPASCQLF-GQKLDRLRNHTAAQLINGFNFLRWLES--EPQDSHNEHVVINGQ--- 155 + N + +++ ++ + + ES + + + + Sbjct: 271 ISHINKEGINILASNPQEKIIGRHLSEFVKDDQLIIINESIHKGRFVQEYETIFMNRGRD 330 Query: 156 -NFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAA-QDVSAFSQIVAVSPKM 213 +L+ I P+ + +GAV+ L + ++ R + N F I S + Sbjct: 331 TQYLLNIRPIA---DGQGKYNSGAVIRLSRSDKVNRMVANRGGTPASFKFEDIKGKSTSL 387 Query: 214 KHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVES 273 ++ AQ +A +L+ G++GTGK+LFA + H S +A P++A+NCAS+P + +ES Sbjct: 388 AKSIQIAQNVARTGYNVLLIGESGTGKELFAQSIHN-SYKADGPFVAVNCASLPRNLIES 446 Query: 274 ELFGHAPE--------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGE 325 ELFG+ G+ G E ANGG++ LDEIG+M +Q LLR L + R+G Sbjct: 447 ELFGYEGGTFTGADRNGRPGKIELANGGTLFLDEIGDMPLEIQPVLLRVLEEKRVTRLGG 506 Query: 326 DHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFV 385 + VD RVI AT KNL +V++ FREDLY+RL++ + +PPLR+ D++ L E F+ Sbjct: 507 SRGIPVDFRVIAATNKNLSLMVKEKTFREDLYFRLSIFKITIPPLRERDHDVILLAEYFI 566 Query: 386 ARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDY 445 + + PKL+ + Y+WPGN+RQL+NA+ + + ++ Sbjct: 567 EDISKKLMSEVPKLSPASYQKIKEYSWPGNIRQLQNAMVYGVNMSTNGVIELSNLPDEMT 626 Query: 446 DAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYG 505 + + +L EI + L + + ++ LG+ T I KL+EYG Sbjct: 627 SNDYFRTKVNTRKLTLAEIEKEV---IFEALSQTGNDASEASRILGIGRTTIYRKLKEYG 683 Query: 506 LSQK 509 + K Sbjct: 684 IDIK 687 >UniRef50_B4D0Z8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0Z8_9BACT Length = 466 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 124/407 (30%), Positives = 211/407 (51%), Gaps = 22/407 (5%) Query: 112 LFGQKLDRLRNHTA----AQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQ 167 + ++D++ +++ + + ++ E + + +++ + V Sbjct: 50 ITDLRMDKVGGLDILRECREVLPQTPVILITAYKTVETALEAMKLGAYDYITKPFKV--- 106 Query: 168 DENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLS 227 ++ + + +S +R R L+ + ++ F I+ S KM+ + K+A Sbjct: 107 --DELQLTIQRALDNQSLVRENRNLRQIV-KEKYRFENIIGTSTKMQEIYNLIAKVADTD 163 Query: 228 APLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH-------AP 280 + +LI G++GTGK+L A A H S R +P++A+NC+++PE+ +ESELFGH A Sbjct: 164 STILIQGESGTGKELVARALHFNSTRQHQPFVAINCSALPENLLESELFGHKKGSFTGAV 223 Query: 281 EGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQ 340 + K G FE+A GG++ LDE+ M+ +Q KLLR L + RRVG+ V ++VRV+ AT Sbjct: 224 QDKIGLFEEAEGGTIFLDEVNSMAQPLQTKLLRVLQERQIRRVGDTKSVPINVRVLAATN 283 Query: 341 KNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLA 400 + L + ++ G FREDLYYRL V+ + +P LR+ P DI L F+ + A + G K+ Sbjct: 284 EALGDKIKGGNFREDLYYRLAVIPVEMPALRERPDDIPLLVSHFLQKNAAQTGTEAKKID 343 Query: 401 ADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDA---- 456 +L +Y WPGNVR+L+NA+ RA D +R D+ AT E + Sbjct: 344 PKAIEMLAKYRWPGNVRELENAVERACALCDDALIRTTDLPPQVIRHATAPPVEHSGTLP 403 Query: 457 MEGSLDEITSRFERSVLTQLYRNYPSTR-KLAKRLGVSHTAIANKLR 502 + +LDE ER + + + ++R K AK LG+S + KL Sbjct: 404 VGQTLDEYIREQERRYIEETIKFNGNSREKAAKMLGISMATLYRKLE 450 >UniRef50_UPI0001972FEB sigma-54 factor, interaction region n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001972FEB Length = 638 Score = 455 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 148/469 (31%), Positives = 236/469 (50%), Gaps = 28/469 (5%) Query: 54 LMAEIRRIAGVTDVRTVPWMPSEREHLALSAL---LEALPEPVLSVDMKSKVDMANPASC 110 LM E I+ D ER+ L+ + + + VLS D + +N + Sbjct: 179 LMVEPSNISLAIDSALSILSSMERKDEYLTTISTTINRISNAVLSFDTSGSLLFSNETAE 238 Query: 111 QLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDEN 170 ++ + L + A ++ ++ + + + G+ ++ E PV + Sbjct: 239 RMLPTLRECLFSGEAESFLHIGRRPIEGKANL-HKKQQILRLGGKIYVAEYLPVIVSRRL 297 Query: 171 DQHVLT----GAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAML 226 V+ ++ +R+ + + A+ S F I+ S +K + A+K A Sbjct: 298 KSIVVIVSSENSIQSAEKRLRLSKSERGYTAK--SHFEDIIGESRVLKDTIHLARKYARS 355 Query: 227 SAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAP------ 280 + +LITG+TGTGK+LFA + H S RA +P++A+NCA++P+ +ESELFG+ Sbjct: 356 QSSVLITGETGTGKELFAQSIHNESSRADEPFVAINCAALPQSLLESELFGYVKGAFTGA 415 Query: 281 --EGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICA 338 EGK G FE A+ G+V LDEIGEM +QAKLLR L + R+G+D + VD+R+I A Sbjct: 416 NKEGKMGIFEMAHRGTVFLDEIGEMDLNVQAKLLRVLQEREVCRLGDDRIIPVDIRIISA 475 Query: 339 TQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPK 398 T KNL ELV++ +FREDL YRLNVL LNLPPLR D+ L ++ R Sbjct: 476 TNKNLYELVEQKLFREDLLYRLNVLELNLPPLRSRTGDVPLLVNAYMKRQNR-----PVT 530 Query: 399 LAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAME 458 D +L+R PGNVRQL N + R +T DG E+ + + + + + + Sbjct: 531 FLPDAMELLSREPCPGNVRQLFNLLERIVTLSDGREISASWL----KNIFSFSGKTEPLP 586 Query: 459 GSLDEITSRFERSVLTQLYR-NYPSTRKLAKRLGVSHTAIANKLREYGL 506 G L++ E++ + R N+ + K AK LG+S + K+++YGL Sbjct: 587 GLLEDTVGNCEQTEIEHALRKNHGNRAKTAKDLGISTATLWRKMKKYGL 635 >UniRef50_A8S1K8 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S1K8_9CLOT Length = 637 Score = 455 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 149/464 (32%), Positives = 237/464 (51%), Gaps = 26/464 (5%) Query: 53 SLMAEIRRIAGVTDVRTVPWMPSEREHLALS---ALLEALPEPVLSVDMKSKVDMANPAS 109 SL IR+ + R +RE L L + ++ E +LS + +AN Sbjct: 181 SLKKAIRQAESIIYAR-------QREKLQLKCFSSAASSIQEGILST-ENGTIVVANQEM 232 Query: 110 CQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNE-HVVINGQNFLMEITPVYLQ- 167 + + N A L + L D+ ++ + INGQN+ ++ + + Sbjct: 233 GHILNINERLILNKKAEALPSSLMAPCILTFMFHDTADDGILKINGQNYYVKKSTARSKT 292 Query: 168 DENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLS 227 ++ V G + R+ +L+N F IVA S MK ++++A+ A + Sbjct: 293 NQRIIAVFQGTHNIQYQEQRVRSELRNNGFMAKYTFEDIVAESALMKSLMDKARLYASTN 352 Query: 228 APLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA-------- 279 A +LI G++GTGK+L A + H ASPR +P++A+NCA+IP +ESELFG+ Sbjct: 353 AGILINGNSGTGKELLAQSIHNASPRHNQPFVAVNCAAIPASLLESELFGYEEGAFSGAK 412 Query: 280 PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICAT 339 GK+G FE A+ G++ LDEI M +Q+ LLR + + RRVG ++VD+R+I A Sbjct: 413 KGGKRGLFELAHKGTIFLDEINSMPIELQSVLLRTIQEKEIRRVGAQKNIYVDIRIISAC 472 Query: 340 QKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKL 399 KN+ EL+ G FR DLYYRLN L L +P L +DI PL F+ R++ + VP P L Sbjct: 473 NKNMEELIADGKFRADLYYRLNTLKLTMPDLETRKEDIPPLCGYFLKRYSAKYSVPIPAL 532 Query: 400 AADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDIL--LPDYDAATVAVGEDAM 457 + + + +L + +WPGNVR+L+N ++R + D L P AA+ + + Sbjct: 533 SPEDSEILLKRSWPGNVRELENTMHRYVILSSLQHCSVNDCLDGTPPEQAASSGASQPPL 592 Query: 458 EGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKL 501 EG+L ++ R L + N+ S K AK+LG+S + + KL Sbjct: 593 EGTLAQMELALIRKCLEE---NHGSREKTAKQLGISRSTLWKKL 633 >UniRef50_B8FUC3 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FUC3_DESHD Length = 696 Score = 455 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 118/450 (26%), Positives = 218/450 (48%), Gaps = 27/450 (6%) Query: 78 EHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRW 137 H+ +L + E ++ D + K+ N +F + + T + + G Sbjct: 246 HHMQ-EVILSVIEEGIIITDNRGKIITINKEVVNIFNTAEEEIIGRTIDRFL-GPQIGEA 303 Query: 138 LESEPQDSHNEHVVING--QNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNV 195 + + E + N +++L+ I P+ + + GAV+ + + + N Sbjct: 304 VRNNETVDIEEAICSNNHDKSYLVLIRPL----DKHGNYPNGAVLRVNPMEIINALVTNR 359 Query: 196 AAQ-DVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRA 254 F +I+ S +K + ++ ++ + +L+TG++GTGK+LFA A H A R Sbjct: 360 TGAFATYTFDKIIGKSKAIKETISLGKRFSLSNENILLTGESGTGKELFAQAIHNA-HRP 418 Query: 255 GKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGEMSPR 306 P++A+NCA++P + +ESELFG+ G+ G E A+GG++ LDEIG+M Sbjct: 419 QGPFIAVNCAAMPRELIESELFGYEGGSFTGAERRGRAGKIELAHGGTLFLDEIGDMPLE 478 Query: 307 MQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLN 366 +QA LLR L D R+G VD R++ AT K+L + + +FR DL++RL++L++ Sbjct: 479 VQAILLRVLEDKKVMRIGGHTYKKVDFRLVAATNKDLERMSHENLFRSDLFFRLSILSIQ 538 Query: 367 LPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRA 426 LPPLR D+ L F+ ++ + P ++ + VL Y WPGNVRQL+N++ A Sbjct: 539 LPPLRKRDNDVEVLANYFIGKYCAKIKRKAPLISEEALEVLKSYGWPGNVRQLENSVIYA 598 Query: 427 LTQLDGYELRPQDILLPDYDAATVAVGEDAMEG------SLDEI--TSRFERSVLT-QLY 477 + G ++ + + Y A++ +L+ I E+ ++ LY Sbjct: 599 VNLAQGDLIQCRHLPESLYAASSSPAENYRDPPGMTGSYTLENIYKIDVMEKILIENALY 658 Query: 478 RNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 + + K ++ LG++ + + K +E + Sbjct: 659 KTRNNITKASELLGMAKSTLYRKAKELNID 688 >UniRef50_Q5P3C3 Sigma-54 dependent DNA-binding response regulator n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5P3C3_AZOSE Length = 447 Score = 455 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 145/448 (32%), Positives = 226/448 (50%), Gaps = 30/448 (6%) Query: 80 LALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLR--- 136 L L++L E VL +D +V N A+ ++ G RL + L G R Sbjct: 5 ATLRVFLDSLEEGVLFLDRARRVLEMNSAAARMIGHDNRRLVDELCPTLFEGTECARACV 64 Query: 137 ------WLESEPQDSHNEHVVI--NGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRM 188 ++ +D + VV G + + + + L + ++LR R Sbjct: 65 ARGECSLTPTKGEDKVQDIVVRSPTGVDIPLRMWAMLLPPNDSGLYCA---IVLRDRSRE 121 Query: 189 GRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACH 248 V +D + S M+ + ++ ++A A +LITG++G GK+L A A H Sbjct: 122 LELEAEV--RDRWQLGGLTGRSRAMQDLYQKVLRVAASEANVLITGESGVGKELVARALH 179 Query: 249 QASPRAGKPYLALNCASIPEDAVESELFGHAPE-------GKKGFFEQANGGSVLLDEIG 301 S RA PY+A++CAS+PE+ ESELFGHA + G FE ANGG++LLDEIG Sbjct: 180 DNSTRAKGPYVAVHCASLPENLEESELFGHAKGSFSGATGARLGRFEAANGGTLLLDEIG 239 Query: 302 EMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLN 361 E+SP Q +LLR L + RVGE+H VDVRV+ AT ++L +V +G FREDLYYRL+ Sbjct: 240 EISPATQTRLLRVLQEREIVRVGENHPRKVDVRVVAATHRDLAGMVGRGEFREDLYYRLH 299 Query: 362 VLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKN 421 VL L++P LR+ +DI L + + P +L+ + + ++WPGNVRQL N Sbjct: 300 VLPLHVPALRERREDIALLASRLLGELGERYRRPDLRLSPEAIVAMESFSWPGNVRQLFN 359 Query: 422 AIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSL-----DEITSRFERSVLTQL 476 A+ A+ DG + PQ + LP+ + E + L ++T E++ + ++ Sbjct: 360 ALEYAVVNSDGATILPQHL-LPEVVTPVESTREALLPLPLTRYYATQVTPDEEQAQIQRM 418 Query: 477 YRNYPSTR-KLAKRLGVSHTAIANKLRE 503 + R + A+RLG+S T + +L Sbjct: 419 LQQCGGNRAEAARRLGMSRTTLWKRLNR 446 >UniRef50_C0Z7K7 Putative transcriptional regulator protein n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z7K7_BREBN Length = 455 Score = 455 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 131/449 (29%), Positives = 222/449 (49%), Gaps = 29/449 (6%) Query: 83 SALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLE--- 139 ALL +L + V D + + + + FG + + + F + Sbjct: 5 EALLGSLFDIVHVTDAEGRTLHGSGRYEEFFGIDPREMVGKPIEEFYHLGYFAPTITMRV 64 Query: 140 -SEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVA-- 196 + + H Q +E TP++ QD N V+ + + S ++ ++L V Sbjct: 65 IRDKKKVHTIQTTRKNQKLFVEGTPIWDQDGNFSGVVHTFIDIT-SQEQLQQELNEVKYV 123 Query: 197 -----------AQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAY 245 + ++ S M+ V A+KL+ + + +++ G++G GK + A Sbjct: 124 GTVMQSEMTKENNRQKGETSLIYRSQSMEQVAMLAKKLSQVESSMILLGESGVGKGVLAK 183 Query: 246 ACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGFFEQANGGSVLL 297 H+ SPR KP++ +NC +IPE +ESELFG+ GK G E+ANGG++ L Sbjct: 184 YIHECSPRVDKPFVHINCGAIPETLLESELFGYEKGAFTGAFKDGKAGLIEKANGGTLFL 243 Query: 298 DEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLY 357 DEIGEMS +Q KLL L + T VG VDV++I AT KNL ++V++G FREDLY Sbjct: 244 DEIGEMSLSLQVKLLNVLQEKTITPVGSSVSRKVDVKLITATNKNLRQMVKEGRFREDLY 303 Query: 358 YRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVR 417 YR++V+ L +PPLR+ ++I L F+ F+ + + R +LA +L+ Y WPGNVR Sbjct: 304 YRIHVVPLEIPPLRERQEEIPVLVHYFLNVFSQKYCLER-QLADTCYRILSEYDWPGNVR 362 Query: 418 QLKNAIYRALTQLDGYELRPQDIL--LPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQ 475 +L+N + R + + P I + + + + ++ E ER ++ + Sbjct: 363 ELENVVERLVVTSHDVLITPAQIPRYIHNQEYREHKGIKVDHVMAMQEAMDEVERQLVQR 422 Query: 476 LYRNYPSTRKLAKRLGVSHTAIANKLREY 504 Y + +T K+A+ LG+S + + KLR++ Sbjct: 423 AYEQHKTTTKVAEALGISQPSASRKLRKW 451 >UniRef50_B1YLR1 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Exiguobacterium RepID=B1YLR1_EXIS2 Length = 551 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 140/482 (29%), Positives = 228/482 (47%), Gaps = 29/482 (6%) Query: 48 FESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANP 107 E E + G + V + L A++ E + + + + NP Sbjct: 76 LEQLIHYFPEAAVLPG--EFVRVLLERLAEKERMLEAIIHCTSEAISVANQAGETMLINP 133 Query: 108 ASCQLFGQKLDRLRNHTAAQLI--NGFNFLRWLESEPQDSHNE-HVVINGQNFLMEITPV 164 A ++ G + A+ I LR LE+ + + ++ ++ PV Sbjct: 134 AYTRMTGYTEGDVIGKPASADIGMQESVHLRVLETGESVRDARMKIGQDRRDIIVNAAPV 193 Query: 165 YLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAA--------QDVSAFSQIVAVSPKMKHV 216 + + + G+V ++R M + + A + F I+A S M+ V Sbjct: 194 VVDGQ-----VRGSVGVIRDISEMKALTKELKAAKQKIRTLEAKYTFDDIIAESESMRFV 248 Query: 217 VEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELF 276 V+QA+ A + +LI G++GTGK+LFA+A H AS R + ++ +NCA+I +ESELF Sbjct: 249 VDQAKLAATMPVNVLIRGESGTGKELFAHAIHAASDRRYEQFVRVNCAAIAPSLLESELF 308 Query: 277 GHAPE--------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHE 328 G+ GK+G+FE+A+GGS+ LDEIGE+ +QAKLLR L + RVG Sbjct: 309 GYEEGAFSGARRGGKRGYFEEAHGGSLFLDEIGELPLDVQAKLLRVLQENEVVRVGGAKA 368 Query: 329 VHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARF 388 V VDVR+I AT NL + + G FREDLYYR+N L +++P LR+ P D+ PL+ + + Sbjct: 369 VPVDVRIIAATNANLEQKIITGEFREDLYYRINRLPIHIPALRERPDDLAPLSTHLLRKL 428 Query: 389 ADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYE--LRPQDILLPDYD 446 G +++ D + + W GNVR+L+N I RAL D E LR + L Sbjct: 429 NQSYGRSVERVSEDALEAIRQQTWKGNVRELENVIGRALIFTDKTEQVLRKGHLQLVSPT 488 Query: 447 AATVAVGEDAMEGSLDEITSRFERSVLTQLYR-NYPSTRKLAKRLGVSHTAIANKLREYG 505 + + L + S E ++ + + + AK+LG+S A+ K+ + Sbjct: 489 PSKRSERPKKEIKHLSDEMSYVEEQLIREALDVVNGNKTEAAKQLGISLRALYYKVERFN 548 Query: 506 LS 507 + Sbjct: 549 IQ 550 >UniRef50_Q2SEE5 Sigma 54-dependent transcriptional activator n=2 Tax=Oceanospirillales RepID=Q2SEE5_HAHCH Length = 471 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 136/454 (29%), Positives = 217/454 (47%), Gaps = 32/454 (7%) Query: 80 LALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLD--RLRNHTAAQLINGFNFLRW 137 L LL++ E + VD K+++ + L D + + I + Sbjct: 22 NPLMDLLDSFCEGSIIVDQKARIRWLSDKYRLLLELPEDAAKYVGRPVEEAIPNSMMRQV 81 Query: 138 LESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAA 197 +ES + + I G ++ P+ +D+ DQ + V + M ++ Sbjct: 82 VESGRPILLD-LMRIRGTWMVVTRMPI--RDDQDQVIGGIGFVFYKQLDYMKPLVEKFGR 138 Query: 198 ----------------QDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKD 241 Q +F+ + SP ++ ++ +A++ A L +L+ G+TGTGK+ Sbjct: 139 LRGVPTTAEKQLADMRQAKYSFADFIGQSPVIRELIRRARQAAELDTTVLLLGETGTGKE 198 Query: 242 LFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGFFEQANGG 293 + A+A H AS RA +P++ +N A+IPE +E+E FG AP G+ G + A+GG Sbjct: 199 VLAHAIHHASVRAERPFVGVNMAAIPESLLEAEFFGAAPGAYTGADRKGRIGKIQLADGG 258 Query: 294 SVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFR 353 ++ LDE+G++S +Q KLLR L + F +G + + V+VR+I AT +NL ++V+ G FR Sbjct: 259 TLFLDEVGDLSLSLQTKLLRVLQEQEFEALGSNRIIRVNVRIIAATSRNLKQMVETGEFR 318 Query: 354 EDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWP 413 DLYYRLNVL + +PPLRD D+ L + +F D +P K A+ +L Y WP Sbjct: 319 SDLYYRLNVLPIEVPPLRDREGDVELLVGNMLRQFCDASALPFRKPNAEAMQLLRTYHWP 378 Query: 414 GNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVL 473 GNVR+L N + RA +G EL D A L E + ER+ L Sbjct: 379 GNVRELHNTLERAFIFAEGTELTVADF--AHLQGAGEKGNRREAVKPLSEAMAEAERNFL 436 Query: 474 TQLYRNYPSTRKL-AKRLGVSHTAIANKLREYGL 506 Q R AK LG+S KL+++ L Sbjct: 437 KQAMSACNGNRSASAKALGISRATFYEKLQKHEL 470 >UniRef50_Q39TT6 Transcriptional regulator, Fis family / DNA-binding protein Fis n=1 Tax=Geobacter metallireducens GS-15 RepID=Q39TT6_GEOMG Length = 473 Score = 454 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 127/451 (28%), Positives = 211/451 (46%), Gaps = 39/451 (8%) Query: 92 PVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRW------LESEPQDS 145 P++ VD ++ N A+C+ FG D TA + G W L+ + Sbjct: 25 PIVWVDSTTRFARVNDAACRCFGYSPDEFIRLTAQDIAPGIPTELWPQHWAELKRMQFRT 84 Query: 146 HNEHVVIN-GQNFLMEITPVYLQDENDQHVLT---------GAVVMLRSTIRMGRQLQNV 195 ++H G+ F +E+ +++ E ++ + LR + + L+N Sbjct: 85 FSDHFRKRSGEKFPVEVEENFIRFEGREYSCSFIKDMTQHFQTQEALRRALDEVQTLKNR 144 Query: 196 AAQD----------VSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAY 245 + + F +IV +P ++ +++A A +LI G+TG GK+L A Sbjct: 145 LEAENVYLMNEIKLSNNFDEIVTGNPIFMKALQLVEQVAPTDASVLILGETGVGKELIAR 204 Query: 246 ACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE-------GKKGFFEQANGGSVLLD 298 A H S R +P + LNCA++P +E+ELFGH K G F+ A+GG++ LD Sbjct: 205 AIHNLSNRRDRPLIRLNCAALPATLMENELFGHERGAFTGANCRKPGRFDLADGGTLFLD 264 Query: 299 EIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYY 358 E+G++ +Q+KLLR L +G F R+G + VDVR++ AT +L L+ +G FR DLYY Sbjct: 265 EVGDLPMELQSKLLRVLQEGEFERLGGAETIKVDVRILAATHVDLKALLAEGRFRSDLYY 324 Query: 359 RLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQ 418 RLNV + PPLR+ +DI L FV ++ G + + L Y WPGN+R+ Sbjct: 325 RLNVFPIQCPPLRERREDIPLLVRHFVKASCEKNGKSIELIPRHVMESLEGYPWPGNIRE 384 Query: 419 LKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYR 478 L+N I RA+ G +L + V + A L+ L Sbjct: 385 LQNVIERAVIISRGNKLEIDSLP------KMVIAADAAPISPLEVTEREHIIRALETTAW 438 Query: 479 NYPSTRKLAKRLGVSHTAIANKLREYGLSQK 509 + A+ LG+ T + ++R+ G++++ Sbjct: 439 RVGGPKGAAEILGLKRTTLQARMRKLGINRQ 469 >UniRef50_C6PP25 Proprionate catabolism activator, Fis family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PP25_9CLOT Length = 620 Score = 454 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 125/487 (25%), Positives = 227/487 (46%), Gaps = 36/487 (7%) Query: 33 IDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEP 92 I I+ E + + E RI +V +E A+L + + Sbjct: 155 IASKFGIHTVHLETGEAAIEKSIKEAVRI---LEVSRKEKEKAE----QFKAILNHINQG 207 Query: 93 VLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVI 152 V+S++ + KV NP + ++ G + ++ + +++ H I Sbjct: 208 VISINKEGKVTTFNPGAEKITGIIEKDILGKDIINFMSNTKLIDVVKTGMPILSQLH-NI 266 Query: 153 NGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQ-------DVSAFSQ 205 L P+ + D+ + GAV + ++ Q + + S Sbjct: 267 GKTEILTNDIPIIVDDK-----VVGAVSTFEAAAKIQEYEQKIRSNLRDKGYIAKYNLSD 321 Query: 206 IVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCAS 265 I+ S ++++ +++ K A+ + +LI G++GTGK++FA H +S R P++ALNC + Sbjct: 322 IIGESEIIQNIKKKSLKYAVTDSTVLIVGESGTGKEMFAQGIHLSSKRKNGPFVALNCGA 381 Query: 266 IPEDAVESELFGHAPE--------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLND 317 IP + +ESELFG+ GK G F +A+GG++ LDEIGE+ QA+LLR + + Sbjct: 382 IPGNLIESELFGYEEGAFTGASRKGKMGLFTEAHGGTIFLDEIGELPIEFQARLLRVIQE 441 Query: 318 GTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDI 377 R +G + + +DVR+I A K+L++ ++KG FR DLYYRLN+L++ +P L + +DI Sbjct: 442 REVRPLGSNKVIPIDVRIIAAANKDLLKEIEKGNFRSDLYYRLNILSMRVPTLMERREDI 501 Query: 378 MPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRP 437 + + F+ K++ +L Y WPGN+R+L+N R + + E+ Sbjct: 502 GIIFKHFLKLMCSRFNK-VVKISEKAINILKEYNWPGNIRELENITERLVVLAE-DEITD 559 Query: 438 QDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAI 497 + L + +D SL+ + +L L + A++LG+S T + Sbjct: 560 E---LVKEELGDFIHYKDEKVSSLEYLKQN---QILKVLSECKGNQTLAAQKLGISRTHL 613 Query: 498 ANKLREY 504 L++Y Sbjct: 614 WRLLKKY 620 >UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator Nla6 n=8 Tax=Cystobacterineae RepID=Q1D552_MYXXD Length = 484 Score = 454 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 129/390 (33%), Positives = 202/390 (51%), Gaps = 18/390 (4%) Query: 123 HTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVML 182 + + + D+ E + +F+++ L + Sbjct: 67 RNLKEELPDCPVVFLTGRGTIDAAVESIREGAYDFIVKPLDTARLKVCIDRALEKK-ETM 125 Query: 183 RSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDL 242 R + R+L+ + + S ++A S M+ V+E +K+A A + I+G++GTGK++ Sbjct: 126 REVQTLRRRLKQLGS------SDLIAQSVGMRKVIELVEKVAPSKASVSISGESGTGKEV 179 Query: 243 FAYACHQASPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSV 295 + A H S R KP++A+NCASIP +ESELFGH A + + G FE A+GG++ Sbjct: 180 VSRAVHNLSLRRDKPFIAINCASIPATLIESELFGHERGAFTGADQRRPGVFEMAHGGTL 239 Query: 296 LLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFRED 355 LDE+GE+ +QAKLLR L +G RR+G E+ VDVRV+CAT ++L + ++ G FRED Sbjct: 240 FLDELGEIPIELQAKLLRVLEEGKLRRLGGKVEIEVDVRVLCATNRDLKQEIKNGRFRED 299 Query: 356 LYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGN 415 LY+RLNV ++LPPLR+ D+ L + FV +F + G + + VL Y WPGN Sbjct: 300 LYFRLNVFQIHLPPLRERRDDVPILVQHFVDKFRGDSGKRVSGVHPEAMEVLKNYDWPGN 359 Query: 416 VRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERS-VLT 474 +R+L+NA+ RA+ DG + + + D A + ER +L Sbjct: 360 IRELRNAVERAVILCDGELITREHLPP---DMAGKSPERHTFRLPFGLSLDAVEREYILG 416 Query: 475 QLYRNYPSTRKLAKRLGVSHTAIANKLREY 504 L RN + + A+ LGVS + NKL Y Sbjct: 417 SLQRNGNNKARTAEVLGVSEKTLYNKLNRY 446 >UniRef50_UPI0001C34ECA sigma-54 dependent transcriptional regulator n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001C34ECA Length = 644 Score = 454 bits (1169), Expect = e-126, Method: Composition-based stats. Identities = 128/455 (28%), Positives = 215/455 (47%), Gaps = 31/455 (6%) Query: 76 EREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFL 135 + + + LL A E +LS+D + M N ++ ++ Sbjct: 197 QEKTSRIHVLLNASKEGLLSIDSLRYIRMVNHSARKILHISESITGMKVMDAPFPREFKK 256 Query: 136 RWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVV--MLRSTIRMGRQLQ 193 LE NE + PV +Q+ N V++ + ++ + R++ Sbjct: 257 LLLEDTACT--NEIFKYGDMMLNVTKYPVMVQNSNMGIVVSFQNISDIMDLENDIRRKIH 314 Query: 194 NVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPR 253 + + F IV SP ++ ++ AQK + + +L+ G +GTGK+LFA + H S R Sbjct: 315 SKGHVAKAHFDDIVGESPAIRSTIQTAQKYSRTDSNILLIGQSGTGKELFAQSIHNHSMR 374 Query: 254 AGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGEMSP 305 P++A+NCA+IPE+ +ESELFG+ GK G+FE A+ G++ LDEIGE+ Sbjct: 375 KDGPFVAVNCAAIPENLLESELFGYTAGAFTGAQKGGKPGYFELAHNGTLFLDEIGEIPL 434 Query: 306 RMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTL 365 + QAKLLR + + R+G D + V++R+I AT +NL +LV++G FREDL+YRL+VL + Sbjct: 435 KFQAKLLRAIQEREIMRLGSDRTISVNIRIIAATNRNLEQLVREGEFREDLFYRLDVLRI 494 Query: 366 NLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYR 425 +P L + +DI L ++ + A P +L+ D +L++ W GN+RQL N R Sbjct: 495 EIPFLENRREDIPLLARGWLLKHA-----PGTELSDDACRLLSQAEWNGNIRQLFNICER 549 Query: 426 ALTQLDGYELRPQDIL--------------LPDYDAATVAVGEDAMEGSLDEITSRFERS 471 G + +D+ LP ++ D + Sbjct: 550 LSVLCSGSLIAGKDVRNVLPTLPQEPGSPALPLPAEPSLPPAAPFRSAEEDSPKDSERET 609 Query: 472 VLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 +L L S + A LG+S + + K++E+ L Sbjct: 610 ILKALEICRYSRSRAAALLGISRSTLWRKMKEFNL 644 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_B4RUH9 Transcriptional regulatory protein tyrR n=6 Tax=... 625 e-177 UniRef50_Q3AAC4 Sigma-54 dependent transcriptional regulator n=2... 623 e-177 UniRef50_Q15RI2 Transcriptional regulator, TyrR n=12 Tax=Bacteri... 620 e-176 UniRef50_A1HQW3 Sigma54 specific transcriptional regulator, Fis ... 596 e-169 UniRef50_Q9ZIB7 Transcriptional regulatory protein tyrR n=263 Ta... 594 e-168 UniRef50_B2A3R3 PAS modulated sigma54 specific transcriptional r... 590 e-167 UniRef50_UPI0000E0E363 sigma-54 dependent transcriptional regula... 586 e-166 UniRef50_A0Q207 Transcriptional regulator n=3 Tax=Clostridium Re... 585 e-165 UniRef50_B8G264 Putative sigma54 specific transcriptional regula... 583 e-165 UniRef50_A5D2K0 Transcriptional regulator n=2 Tax=Clostridia Rep... 583 e-165 UniRef50_B1JB99 Sigma-54 factor interaction domain-containing pr... 577 e-163 UniRef50_A1VG32 Sigma54 specific transcriptional regulator, Fis ... 576 e-163 UniRef50_C6Q1R8 PAS modulated sigma54 specific transcriptional r... 575 e-162 UniRef50_Q12L04 Transcriptional regulator, TyrR n=3 Tax=Shewanel... 572 e-161 UniRef50_B8FXH0 PAS modulated sigma54 specific transcriptional r... 567 e-160 UniRef50_C8X2X5 PAS modulated sigma54 specific transcriptional r... 566 e-160 UniRef50_C8W252 PAS modulated sigma54 specific transcriptional r... 565 e-159 UniRef50_A5D1E1 Transcriptional regulator n=3 Tax=Bacteria RepID... 565 e-159 UniRef50_Q897M6 Transcriptional regulatory protein n=1 Tax=Clost... 564 e-159 UniRef50_B8F9P3 PAS modulated sigma54 specific transcriptional r... 563 e-159 UniRef50_A6FE33 Sigma-54 dependent transcriptional regulator Tyr... 563 e-159 UniRef50_C9KM56 Sigma-54 dependent transcriptional regulator/sen... 561 e-158 UniRef50_Q3ACP6 Sigma-54 dependent transcriptional regulator n=4... 559 e-158 UniRef50_C4XRZ0 Fis family transcriptional regulator n=1 Tax=Des... 559 e-157 UniRef50_UPI0001C424D6 transcriptional regulator n=1 Tax=Bacillu... 559 e-157 UniRef50_A1HPH1 Putative PAS/PAC sensor protein n=1 Tax=Thermosi... 557 e-157 UniRef50_C0Z5U4 Probable transcriptional regulator n=1 Tax=Brevi... 554 e-156 UniRef50_B2A1V9 PAS modulated sigma54 specific transcriptional r... 552 e-155 UniRef50_C2W7W3 Transcriptional regulator n=4 Tax=Bacillus RepID... 551 e-155 UniRef50_A4J593 Sigma54 specific transcriptional regulator, Fis ... 550 e-155 UniRef50_C9RXL1 GAF modulated sigma54 specific transcriptional r... 550 e-155 UniRef50_B8DQH7 PAS modulated sigma54 specific transcriptional r... 550 e-155 UniRef50_A5D421 Transcriptional regulator n=1 Tax=Pelotomaculum ... 549 e-155 UniRef50_B0TAR7 Sigma-54-dependent transcriptional activator (Ni... 549 e-155 UniRef50_C3AI49 Sigma54 specific transcriptional regulator, Fis ... 549 e-155 UniRef50_C0GH67 PAS modulated sigma54 specific transcriptional r... 549 e-154 UniRef50_Q0AVM6 Transcriptional regulator containing PAS AAA-typ... 549 e-154 UniRef50_B2A661 PAS modulated sigma54 specific transcriptional r... 549 e-154 UniRef50_C0GRG2 PAS modulated sigma54 specific transcriptional r... 548 e-154 UniRef50_B8FWA2 PAS modulated sigma54 specific transcriptional r... 548 e-154 UniRef50_Q2RKJ6 Sigma54 specific transcriptional regulator with ... 548 e-154 UniRef50_A4IPF8 Transcriptional regulator n=6 Tax=Bacillales Rep... 547 e-154 UniRef50_P26047 Signal-transduction and transcriptional-control ... 547 e-154 UniRef50_Q0SQI9 Phosphocarrier HPr/sensory box protein/sigma-54 ... 546 e-154 UniRef50_A1HNH8 Sigma54 specific transcriptional regulator, Fis ... 546 e-154 UniRef50_C8VXU8 Putative sigma54 specific transcriptional regula... 545 e-153 UniRef50_B0K647 Sigma54 specific transcriptional regulator, Fis ... 544 e-153 UniRef50_A4J1E1 Transcriptional regulator n=1 Tax=Desulfotomacul... 543 e-153 UniRef50_C0GGJ4 Putative sigma54 specific transcriptional regula... 543 e-153 UniRef50_Q1K388 Sigma54 specific transcriptional regulator, Fis ... 543 e-153 UniRef50_Q3ACE2 Sigma-54 dependent transcriptional regulator n=1... 542 e-152 UniRef50_Q67SC0 Sigma-54-dependent transcriptional regulator n=2... 542 e-152 UniRef50_A4J599 Sigma54 specific transcriptional regulator, Fis ... 541 e-152 UniRef50_A6LYP8 Sigma54 specific transcriptional regulator, Fis ... 541 e-152 UniRef50_C6HY50 Sigma54 specific transcriptional regulator, Fis ... 540 e-152 UniRef50_Q0AWW3 Sigma-L-dependent transcriptional regulator n=4 ... 538 e-151 UniRef50_A1HRK7 Sigma54 specific transcriptional regulator, Fis ... 538 e-151 UniRef50_C0QF87 Transcriptional regulator (PAS/PAC domain protei... 537 e-151 UniRef50_C9S238 PAS modulated sigma54 specific transcriptional r... 536 e-151 UniRef50_B2A2S4 PAS modulated sigma54 specific transcriptional r... 536 e-151 UniRef50_Q3ACI2 Sigma-54-dependent transcriptional regulator n=1... 535 e-150 UniRef50_A6TX18 Sigma54 specific transcriptional regulator, Fis ... 535 e-150 UniRef50_C1P9P9 PAS modulated sigma54 specific transcriptional r... 534 e-150 UniRef50_A4J4M1 Sigma54 specific transcriptional regulator, Fis ... 534 e-150 UniRef50_A6LVD4 Sigma54 specific transcriptional regulator, Fis ... 533 e-150 UniRef50_C8X1R7 PAS modulated sigma54 specific transcriptional r... 533 e-150 UniRef50_A3YA14 Sigma-54 dependent transcriptional regulator n=1... 532 e-149 UniRef50_B8FIT8 PAS modulated sigma54 specific transcriptional r... 532 e-149 UniRef50_A1VFM6 Sigma54 specific transcriptional regulator, Fis ... 531 e-149 UniRef50_Q5WKW0 Transcriptional regulator n=1 Tax=Bacillus claus... 531 e-149 UniRef50_A7GID7 Sigma-54 dependent transcriptional regulator n=1... 531 e-149 UniRef50_A1HRA8 Sigma54 specific transcriptional regulator, Fis ... 530 e-149 UniRef50_A1HLP6 Sigma54 specific transcriptional regulator, Fis ... 530 e-149 UniRef50_A9VII1 PAS modulated sigma54 specific transcriptional r... 530 e-149 UniRef50_B6FY43 Putative uncharacterized protein n=1 Tax=Clostri... 529 e-148 UniRef50_C9S255 Proprionate catabolism activator, Fis family n=2... 529 e-148 UniRef50_Q0AWA7 Acetoin operon expression regulatory protein n=1... 529 e-148 UniRef50_A5I3D4 Putative sigma-54 dependent transcriptional regu... 529 e-148 UniRef50_A7GG75 Sensory box sigma-54 dependent transcriptional r... 528 e-148 UniRef50_A3ESE7 Sigma54 specific transcriptional regulator, Fis ... 527 e-148 UniRef50_A6CKR1 Putative uncharacterized protein n=1 Tax=Bacillu... 527 e-148 UniRef50_A5D511 Transcriptional regulator n=1 Tax=Pelotomaculum ... 527 e-148 UniRef50_B8FD14 PAS modulated sigma54 specific transcriptional r... 527 e-148 UniRef50_Q3A203 Two component signal transduction response regul... 527 e-148 UniRef50_B0K2Z9 Sigma54 specific transcriptional regulator, Fis ... 527 e-148 UniRef50_Q9K633 Transcriptional regulator n=2 Tax=Bacillus RepID... 526 e-148 UniRef50_A6TL20 Sigma54 specific transcriptional regulator, Fis ... 526 e-148 UniRef50_UPI00016C5695 DNA-binding protein Fis / transcriptional... 525 e-147 UniRef50_B9M8I7 PAS modulated sigma54 specific transcriptional r... 525 e-147 UniRef50_Q81CD5 Sigma-54-dependent transcriptional activator n=3... 525 e-147 UniRef50_Q9KBP6 Transcriptional regulator (Sigma-L-dependent) n=... 525 e-147 UniRef50_A1HSG4 Putative PAS/PAC sensor protein n=1 Tax=Thermosi... 524 e-147 UniRef50_C7LR14 PAS modulated sigma54 specific transcriptional r... 524 e-147 UniRef50_C5DAI7 PAS modulated sigma54 specific transcriptional r... 524 e-147 UniRef50_C0GEJ3 PAS modulated sigma54 specific transcriptional r... 524 e-147 UniRef50_C8X5E7 PAS modulated sigma54 specific transcriptional r... 524 e-147 UniRef50_B8FXN8 Putative sigma54 specific transcriptional regula... 523 e-147 UniRef50_A1HS80 Sigma54 specific transcriptional regulator, Fis ... 523 e-147 UniRef50_C1DNV1 Sigma54-dependent activator protein n=8 Tax=Gamm... 523 e-147 UniRef50_C0GD56 PAS modulated sigma54 specific transcriptional r... 523 e-147 UniRef50_B7HA57 Sensory box sigma-54 dependent DNA-binding respo... 523 e-147 UniRef50_C4FI59 AAA family ATPase n=1 Tax=Sulfurihydrogenibium y... 523 e-147 UniRef50_A0LPB0 Sigma54 specific transcriptional regulator, Fis ... 522 e-147 UniRef50_B8FKE8 Sigma54 specific transcriptional regulator, Fis ... 522 e-147 UniRef50_C9XRJ3 Sigma-54-dependent transcriptional activator n=5... 522 e-146 UniRef50_Q484S1 Sigma-54 dependent transcriptional regulator n=1... 521 e-146 UniRef50_Q0AVA7 Transcriptional regulator containing PAS AAA-typ... 521 e-146 UniRef50_P54529 Putative sigma L-dependent transcriptional regul... 519 e-146 UniRef50_C0GEG9 PAS modulated sigma54 specific transcriptional r... 519 e-146 UniRef50_A5D2Z2 Transcriptional regulator n=1 Tax=Pelotomaculum ... 519 e-146 UniRef50_Q5WF71 Sigma-L-dependent transcriptional regulator n=2 ... 517 e-145 UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional... 517 e-145 UniRef50_Q8EMV1 Transcriptional regulator n=2 Tax=Bacillaceae Re... 517 e-145 UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional... 517 e-145 UniRef50_Q8R5U6 NtrC family Transcriptional regulator, ATPase do... 517 e-145 UniRef50_B8FTG8 PAS modulated sigma54 specific transcriptional r... 516 e-145 UniRef50_B2A8I7 Putative sigma54 specific transcriptional regula... 516 e-145 UniRef50_C5ESD9 PAS modulated sigma54 specific transcriptional r... 516 e-145 UniRef50_Q30XH6 Putative transcriptional regulator, Fis family n... 516 e-144 UniRef50_B7HB38 Sensory box sigma-54 dependent DNA-binding respo... 516 e-144 UniRef50_A8S4D9 Putative uncharacterized protein n=1 Tax=Clostri... 516 e-144 UniRef50_B4DAQ1 Transcriptional regulator, NifA subfamily, Fis F... 515 e-144 UniRef50_Q5WE88 Transcriptional activator of the acetoin dehydro... 515 e-144 UniRef50_A0RFE6 Sensory box sigma-54 dependent DNA-binding respo... 515 e-144 UniRef50_Q5WJF2 Transcriptional regulator n=2 Tax=Bacillus RepID... 515 e-144 UniRef50_B3E3G2 PAS modulated sigma54 specific transcriptional r... 514 e-144 UniRef50_A4IPD5 Transcriptional regulator n=6 Tax=Geobacillus Re... 513 e-144 UniRef50_Q0AVD1 Putative uncharacterized protein n=1 Tax=Syntrop... 513 e-144 UniRef50_A6LJ55 Sigma54 specific transcriptional regulator, Fis ... 513 e-144 UniRef50_A4J8D6 Putative PAS/PAC sensor protein n=1 Tax=Desulfot... 513 e-144 UniRef50_A8RIT6 Putative uncharacterized protein n=1 Tax=Clostri... 512 e-143 UniRef50_A8MFU8 PAS modulated sigma54 specific transcriptional r... 512 e-143 UniRef50_A6LV86 Sigma54 specific transcriptional regulator, Fis ... 512 e-143 UniRef50_A6TVV8 Sigma54 specific transcriptional regulator, Fis ... 512 e-143 UniRef50_Q48G07 Transcriptional regulator PhhR n=28 Tax=cellular... 511 e-143 UniRef50_Q2LQP1 Transcrption factor sigma 54 type n=4 Tax=Deltap... 511 e-143 UniRef50_A3Y5W7 Transcriptional regulatory protein n=1 Tax=Marin... 511 e-143 UniRef50_A8MJJ5 PAS modulated sigma54 specific transcriptional r... 511 e-143 UniRef50_A1AME4 GAF modulated sigma54 specific transcriptional r... 511 e-143 UniRef50_B3E653 PAS modulated sigma54 specific transcriptional r... 510 e-143 UniRef50_A5GDL0 Sigma-54 specific transcriptional regulator, Fis... 510 e-143 UniRef50_C0Z9N5 Probable transcriptional regulator n=1 Tax=Brevi... 509 e-143 UniRef50_A6TWZ7 Sigma54 specific transcriptional regulator, Fis ... 509 e-143 UniRef50_Q67RR4 Sigma-54-dependent transcriptional regulator n=1... 509 e-143 UniRef50_A6TL57 Sigma54 specific transcriptional regulator, Fis ... 509 e-143 UniRef50_A6SWE4 Sigma-54-dependent transcriptional activator n=4... 509 e-143 UniRef50_Q2FA16 TyrR n=1 Tax=Vibrio sp. DAT722 RepID=Q2FA16_9VIBR 509 e-142 UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3... 509 e-142 UniRef50_Q1JWW3 GAF modulated sigma54 specific transcriptional r... 508 e-142 UniRef50_B8D1H9 Putative PAS/PAC sensor protein n=1 Tax=Halother... 508 e-142 UniRef50_C8WZA1 Sigma54 specific transcriptional regulator, Fis ... 507 e-142 UniRef50_A4J4R9 Sigma54 specific transcriptional regulator, Fis ... 507 e-142 UniRef50_C8WQE7 PAS modulated sigma54 specific transcriptional r... 507 e-142 UniRef50_A4IRU9 Sigma-54-dependent transcriptional activator n=3... 507 e-142 UniRef50_B8FIH6 PAS modulated sigma54 specific transcriptional r... 507 e-142 UniRef50_C4XT50 Fis family transcriptional regulator n=1 Tax=Des... 507 e-142 UniRef50_C6PP25 Proprionate catabolism activator, Fis family n=1... 506 e-142 UniRef50_C1PBV8 Putative sigma54 specific transcriptional regula... 506 e-141 UniRef50_C6PWR5 Putative sigma54 specific transcriptional regula... 506 e-141 UniRef50_B0K4W6 GAF modulated sigma54 specific transcriptional r... 505 e-141 UniRef50_D2LAE8 PAS modulated sigma54 specific transcriptional r... 505 e-141 UniRef50_A6TJU2 Putative PAS/PAC sensor protein n=1 Tax=Alkaliph... 505 e-141 UniRef50_Q0SR73 Sigma-54 dependent transcriptional regulator n=1... 505 e-141 UniRef50_A8ZTX6 PAS modulated sigma54 specific transcriptional r... 505 e-141 UniRef50_A6LV27 Sigma54 specific transcriptional regulator, Fis ... 505 e-141 UniRef50_Q8EN58 Transcriptional regulator n=1 Tax=Oceanobacillus... 505 e-141 UniRef50_A9HYL1 Propionate catabolism operon regulator n=3 Tax=B... 505 e-141 UniRef50_B2A7X5 Putative sigma54 specific transcriptional regula... 504 e-141 UniRef50_Q3ACC6 Sigma-54 dependent transcriptional regulator n=1... 504 e-141 UniRef50_A1VAP6 Sigma54 specific transcriptional regulator, Fis ... 504 e-141 UniRef50_A4J443 Two component, sigma54 specific, transcriptional... 504 e-141 UniRef50_B1YLR1 PAS modulated sigma54 specific transcriptional r... 504 e-141 UniRef50_A8IQ96 Transcriptional regulator n=18 Tax=Proteobacteri... 503 e-141 UniRef50_B8FV05 Sigma54 specific transcriptional regulator, Fis ... 503 e-141 UniRef50_Q5WL87 Transcriptional regulator n=1 Tax=Bacillus claus... 503 e-141 UniRef50_C0QEM3 Sigma-54 dependent transcriptional regulator (PA... 503 e-141 UniRef50_B8FQM8 PAS modulated sigma54 specific transcriptional r... 503 e-141 UniRef50_Q2RHS4 Sigma54 specific transcriptional regulator, Fis ... 502 e-140 UniRef50_A1HSK4 Sigma54 specific transcriptional regulator, Fis ... 502 e-140 UniRef50_Q24ZH2 Putative uncharacterized protein n=1 Tax=Desulfi... 502 e-140 UniRef50_Q8ES30 Transcriptional regulator n=1 Tax=Oceanobacillus... 502 e-140 UniRef50_B8FM80 PAS modulated sigma54 specific transcriptional r... 502 e-140 UniRef50_C0CTF4 Putative uncharacterized protein n=1 Tax=Clostri... 502 e-140 UniRef50_Q2RH79 Sigma54 specific transcriptional regulator with ... 501 e-140 UniRef50_A4J616 Two component, sigma54 specific, transcriptional... 501 e-140 UniRef50_A0YEC8 Transcriptional regulatory protein n=2 Tax=Prote... 501 e-140 UniRef50_Q89W03 Transcriptional regulatory protein n=1 Tax=Brady... 501 e-140 UniRef50_Q02BY0 Sigma54 specific transcriptional regulator, Fis ... 501 e-140 UniRef50_B8DQ12 PAS modulated sigma54 specific transcriptional r... 501 e-140 UniRef50_B5WAL2 PAS modulated sigma54 specific transcriptional r... 500 e-140 UniRef50_Q2LRH6 Transcriptional regulator with sigma 54 interact... 500 e-140 UniRef50_C8QHJ7 Sigma54 specific transcriptional regulator, Fis ... 499 e-140 UniRef50_Q17ZX8 Putative sigma-54 interacting protein n=8 Tax=Cl... 499 e-139 UniRef50_Q027A1 Two component, sigma54 specific, transcriptional... 499 e-139 UniRef50_B9XM81 Sigma54 specific transcriptional regulator with ... 499 e-139 UniRef50_B8FQQ1 Sigma54 specific transcriptional regulator, Fis ... 498 e-139 UniRef50_UPI0001C424F3 transcriptional regulator n=2 Tax=Bacillu... 498 e-139 UniRef50_A5CY60 Transcriptional activator of acetoin/glycerol me... 497 e-139 UniRef50_UPI0001C34ECA sigma-54 dependent transcriptional regula... 497 e-139 UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=... 497 e-139 UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional... 497 e-139 UniRef50_C3ICC4 Sigma54 specific transcriptional regulator, Fis ... 497 e-139 UniRef50_Q24N84 Putative uncharacterized protein n=1 Tax=Desulfi... 497 e-139 UniRef50_C0ZHT6 Probable transcriptional regulator n=1 Tax=Brevi... 497 e-139 UniRef50_A9VKT7 PAS modulated sigma54 specific transcriptional r... 497 e-139 UniRef50_Q2SEE5 Sigma 54-dependent transcriptional activator n=2... 497 e-139 UniRef50_Q3A356 Two component, sigma54 specific, transcriptional... 496 e-139 UniRef50_C6PY17 GAF modulated sigma54 specific transcriptional r... 496 e-139 UniRef50_Q183V3 Putative sigma-54 dependent regulatory protein n... 496 e-139 UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulato... 496 e-139 UniRef50_UPI0001BC60A6 putative PAS/PAC sensor protein n=1 Tax=F... 496 e-138 UniRef50_C5JBC1 Sensory box protein/sigma-54 dependent DNA-bindi... 496 e-138 UniRef50_Q39TT6 Transcriptional regulator, Fis family / DNA-bind... 496 e-138 UniRef50_A4IJQ7 Sigma-54-dependent transcriptional activator n=5... 496 e-138 UniRef50_C6JPX9 PAS modulated sigma54 specific transcriptional r... 495 e-138 UniRef50_C0GJ16 GAF modulated sigma54 specific transcriptional r... 495 e-138 UniRef50_C1MAF5 Signal-transduction and transcriptional-control ... 495 e-138 UniRef50_C0D6Q8 Putative uncharacterized protein n=1 Tax=Clostri... 495 e-138 UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC ... 495 e-138 UniRef50_Q1PYB5 Similar to sigma 54 response regulatory protein ... 495 e-138 UniRef50_Q4K4Y9 Sensory box-containing sigma-54 dependent transc... 495 e-138 UniRef50_C8W392 Two component, sigma54 specific, transcriptional... 495 e-138 UniRef50_B8FUC3 PAS modulated sigma54 specific transcriptional r... 494 e-138 UniRef50_B1KVR7 Sigma-54 dependent transcriptional regulator n=1... 494 e-138 UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulato... 494 e-138 UniRef50_C1PCQ8 PAS modulated sigma54 specific transcriptional r... 494 e-138 UniRef50_B7R881 Sigma-54 interaction domain family protein n=3 T... 494 e-138 UniRef50_C6BZ70 PAS modulated sigma54 specific transcriptional r... 494 e-138 UniRef50_Q1Q6P9 Similar to Sigma-54 dependent transcriptional re... 494 e-138 UniRef50_C4XPI1 Fis family transcriptional regulator n=2 Tax=Des... 494 e-138 UniRef50_D1U6M0 PAS modulated sigma54 specific transcriptional r... 493 e-138 UniRef50_Q6AL05 Related to transcription activator Stc n=1 Tax=D... 493 e-138 UniRef50_Q46802 Uncharacterized sigma-54-dependent transcription... 493 e-138 UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional... 493 e-138 UniRef50_D1U4X2 PAS modulated sigma54 specific transcriptional r... 493 e-138 UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Cl... 493 e-138 UniRef50_B1B869 Propionate catabolism operon regulatory protein ... 492 e-138 UniRef50_C3WG76 Sigma-54 dependent transcriptional regulator n=2... 492 e-137 UniRef50_C0Z7K7 Putative transcriptional regulator protein n=1 T... 492 e-137 UniRef50_Q1N5U9 Sigma-54 dependent transcriptional regulator/sen... 492 e-137 UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional... 492 e-137 UniRef50_B4D0Z8 Two component, sigma54 specific, transcriptional... 492 e-137 UniRef50_C5EM87 Sigma54 specific transcriptional regulator n=1 T... 492 e-137 UniRef50_B8G0V4 Sigma54 specific transcriptional regulator, Fis ... 492 e-137 UniRef50_Q1Q1B9 Strong similarity to sigma 54 response regulator... 491 e-137 UniRef50_B5YHF3 Acetoacetate metabolism regulatory protein AtoC ... 491 e-137 UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional... 491 e-137 UniRef50_C0QBD4 Sigma-54 dependent sensory box histidine kinase/... 491 e-137 UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional... 491 e-137 UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional... 490 e-137 Sequences not found previously or not previously below threshold: >UniRef50_B4RUH9 Transcriptional regulatory protein tyrR n=6 Tax=Gammaproteobacteria RepID=B4RUH9_ALTMD Length = 518 Score = 625 bits (1612), Expect = e-177, Method: Composition-based stats. Identities = 244/514 (47%), Positives = 349/514 (67%), Gaps = 7/514 (1%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRR 60 MRLE+ C+DRLG+T+++LD+LV + IDLRGIEIDP G+I+LNF +EF F LM +IRR Sbjct: 1 MRLEISCQDRLGITQDVLDILVTKEIDLRGIEIDPAGKIFLNFPNIEFADFQHLMPQIRR 60 Query: 61 IAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRL 120 I G+ DV+T +MP ERE LSA+L LP+PV S+D K + + N A + Sbjct: 61 IDGIDDVKTTLFMPGEREKNQLSAILRTLPDPVFSIDAKGNIVLCNEAVSAGLEMPTSDI 120 Query: 121 RNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVV 180 ++++ GFNF +W++ + + V Q++L ++ P+ + D + ++ GAVV Sbjct: 121 EGTEISEVVKGFNFTKWMDGKSPGPQSSKVKFIQQDYLADMLPITVPDGDKNMIMAGAVV 180 Query: 181 MLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGK 240 +L+S +R+G+Q +F + +A SP MK VV +A+++A L AP+LI G+TGTGK Sbjct: 181 ILKSEMRLGQQFTAFHQSPTDSFDRFIAQSPFMKRVVHEAKRIADLDAPILIFGETGTGK 240 Query: 241 DLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE------GKKGFFEQANGGS 294 ++ A ACHQ+S R+ +LALNCAS+P+ E+ELFG+A K G EQA GG+ Sbjct: 241 EMIARACHQSSRRSEGAFLALNCASLPDSVAETELFGYAAGAFNQPNAKVGLLEQAKGGT 300 Query: 295 VLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFRE 354 +LLDEI +MS ++QAKLLR L DG FRRVG+ V VDVR IC T ++L +LV++G FR+ Sbjct: 301 LLLDEIADMSSQLQAKLLRVLEDGEFRRVGDAEPVKVDVRFICTTCRDLGQLVEEGRFRK 360 Query: 355 DLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPG 414 +LYYRLNVL+L +P L+D QDI+PL E F+ + + + G KL+ L +Y WPG Sbjct: 361 ELYYRLNVLSLVMPSLKDRRQDIVPLAESFIVQHSTKLGRRPAKLSKSCVDFLQQYPWPG 420 Query: 415 NVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLT 474 NVRQL+NA+YRAL+ LDG E+ +DI LP A +V ++ EG+LDE +FE+ +L Sbjct: 421 NVRQLQNALYRALSLLDGKEITKEDIQLPSC-APSVTYIDENFEGTLDEEVKKFEKDLLK 479 Query: 475 QLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQ 508 +LY +YPSTR+LAK+LG+SHTAIANKLREYG+++ Sbjct: 480 RLYPSYPSTRQLAKKLGLSHTAIANKLREYGINK 513 >UniRef50_Q3AAC4 Sigma-54 dependent transcriptional regulator n=2 Tax=Clostridia RepID=Q3AAC4_CARHZ Length = 516 Score = 623 bits (1608), Expect = e-177, Method: Composition-based stats. Identities = 168/521 (32%), Positives = 300/521 (57%), Gaps = 23/521 (4%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRR 60 ++L + EDR+GL ++ ++ R +++ ++ P GR++L + + ++ ++ +++ Sbjct: 4 IKLSLDFEDRVGLVLDVSRVISARNLNIITFQVLP-GRMFLEIEKTDKKTLKQIIDDLKN 62 Query: 61 IAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRL 120 I V V + MP E++ L A+L+ + E ++++D + + N + ++FG ++R+ Sbjct: 63 IPKVLKVHPIEIMPYEQKEQQLRAVLDTVNEGIIAIDSHGTISICNQSCAEIFGIPVERV 122 Query: 121 RNHTAAQLING-FNFLRWLESEPQDSHNEHVV-INGQ--NFLMEITPVYLQDENDQHVLT 176 +L+ L+ L++ ++ E ++ + G+ ++L P+ ++ + Sbjct: 123 IGQNVGKLLANDIPMLKTLKTGESYNNQEIIINVEGRRLHYLTSGRPI----KDRLGNIV 178 Query: 177 GAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDT 236 G V +L+ + + + +++F+ I+ S KM+ VVE A+K+A +LI G++ Sbjct: 179 GVVAVLKPMSEVRELVYALTKPSLNSFNDIIYTSEKMRFVVEMAKKVARTDTTVLIRGES 238 Query: 237 GTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFE 288 GTGK+LFA A H SPR KP++ LNCA++PE +ESELFG+ GK+G E Sbjct: 239 GTGKELFARAIHLESPRRTKPFVPLNCAAVPESLLESELFGYVEGAFTGAKKGGKQGLLE 298 Query: 289 QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQ 348 A+ G++ LDEI E+ +QAKLLR L +G RR+G E+ VD+R+I AT +NL +V+ Sbjct: 299 FAHEGTLFLDEIAELPTHLQAKLLRVLQEGKVRRIGGQEEIPVDIRIIAATNRNLEGMVR 358 Query: 349 KGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLT 408 +G FREDLY+RLNV L +PPLR+ +DI LT F+ FA +G+ ++ + L Sbjct: 359 EGKFREDLYFRLNVFPLQIPPLRERVEDIEVLTYHFLNTFAKRRGIQYFEITENALNKLK 418 Query: 409 RYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRF 468 Y+WPGNVR+L+N I RALT D + +DI+L + + +L+E ++ Sbjct: 419 AYSWPGNVRELQNVIERALTLADDGVIEAKDIILDNPQNTYF------VARTLEEAVNQV 472 Query: 469 ERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQK 509 E+ ++ + + YPS R+ A+ LGV+HT + NK+++ L+ K Sbjct: 473 EKELIERALKQYPSIRQAARSLGVTHTTLRNKIKKLKLTNK 513 >UniRef50_Q15RI2 Transcriptional regulator, TyrR n=12 Tax=Bacteria RepID=Q15RI2_PSEA6 Length = 518 Score = 620 bits (1601), Expect = e-176, Method: Composition-based stats. Identities = 257/515 (49%), Positives = 351/515 (68%), Gaps = 7/515 (1%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRR 60 MRLE+ C+DRLG+T+++LD+LV +DLRGIEI+ +G+IYL+F ++FE F LM +IR+ Sbjct: 1 MRLEISCQDRLGITQDVLDILVSHEVDLRGIEINEMGKIYLSFPNMDFEHFQHLMPKIRK 60 Query: 61 IAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRL 120 IAG+ DV+T+P+MP ERE L ALL+ LP+PV SVD K ++ + N A + + L Sbjct: 61 IAGIDDVKTIPFMPLEREQNQLRALLQTLPDPVFSVDTKGRILLINDAVTASLETEREAL 120 Query: 121 RNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVV 180 +L+ GFN LRWLES+ S + V QN+L +I PV + D +L GAV Sbjct: 121 IGVDIDELVKGFNTLRWLESKKIASLTQKVRFIEQNYLADILPVMVPDSGGDPILAGAVF 180 Query: 181 MLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGK 240 ML+S R+G+QL + +F I A S MK VV +A+++A L P+++ G+TGTGK Sbjct: 181 MLKSEQRLGQQLTVFHEASLDSFMSIQASSKVMKKVVREAKRMAELDGPIILYGETGTGK 240 Query: 241 DLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE------GKKGFFEQANGGS 294 +L A+ACH+AS R +L LNCAS+P++ E+ELFG+A GK+G E A GGS Sbjct: 241 ELIAHACHEASRRKDASFLVLNCASLPDNVAETELFGYAAGAFGQSTGKEGLLELAQGGS 300 Query: 295 VLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFRE 354 + LDE+G+MSP++QAKLLR L DG FRRVG+ EV VDVR IC TQK+L +LVQ+G FRE Sbjct: 301 LFLDEVGDMSPQLQAKLLRVLQDGKFRRVGDTKEVKVDVRFICTTQKDLAQLVQEGRFRE 360 Query: 355 DLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPG 414 DLYYRLNVL+L +PPLR+ DI+PL E F+ + + G PKL + Y W G Sbjct: 361 DLYYRLNVLSLGIPPLRERKMDIIPLAETFLKQHSLTLGRKVPKLTKSCVDYIQAYPWFG 420 Query: 415 NVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLT 474 NVRQL+N +YRA++ L+G EL + I +P A V ED +GSLDE RFE+S+L Sbjct: 421 NVRQLENVLYRAVSLLEGNELGKEHIQIPSSANAMSFVTED-FDGSLDEEVKRFEKSILQ 479 Query: 475 QLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQK 509 +LY +YPS+R LAK+LG+SHTAIANKLR+YG+++K Sbjct: 480 RLYPSYPSSRLLAKKLGLSHTAIANKLRDYGINKK 514 >UniRef50_A1HQW3 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HQW3_9FIRM Length = 522 Score = 596 bits (1539), Expect = e-169, Method: Composition-based stats. Identities = 155/516 (30%), Positives = 266/516 (51%), Gaps = 10/516 (1%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRR 60 MR+ + DR+ +T ++L + +++ +E+ IY+ F ++ ++ + AEI Sbjct: 7 MRIGIKTIDRVNMTFDILKVFAKYEVNIIWMEVYT-HIIYIKFDRVDAATWGKMHAEILA 65 Query: 61 IAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRL 120 ++GV ++ + + E + +L+A + + +D + + N + Q+ + L Sbjct: 66 VSGVQELTEIDLIAFEEREQLIETILDASSDGFIVIDKDGTIKLTNSRAIQILR-QAGNL 124 Query: 121 RNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVV 180 + ++ + ++ S+ + N + +N+ V+ G ++ Sbjct: 125 EGKSIYTILPAPDIIKKALSKGIEISNHTLFYEHGGGTCHCLVSSRTLKNEAGVIQGLIL 184 Query: 181 MLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGK 240 LR + + ++ F+ IV SP M VV A+ +A ++ +LI G++GTGK Sbjct: 185 TLRDMHDVREMVYSITQARQITFNDIVTKSPSMLSVVALARNIAKNNSTVLIRGESGTGK 244 Query: 241 DLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPEG--------KKGFFEQANG 292 +LFA A H A R KP++ LNCA+IP+ +ESELFG+ K+G FE A+G Sbjct: 245 ELFARAIHAAGKRHNKPFIPLNCAAIPDTLIESELFGYEDGTFTGGKKGGKQGLFELAHG 304 Query: 293 GSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMF 352 G++ LDE+ E+S +QAKLLR L +G RRVG E+ VDVR+I AT +NL +++ G F Sbjct: 305 GTLFLDEVAELSAYVQAKLLRVLQEGMVRRVGGHKEIAVDVRIIAATNRNLEAMLKNGQF 364 Query: 353 REDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAW 412 REDL+YRLNV+ L +PPLR+ +DI L + F+ + G P ++ + RY W Sbjct: 365 REDLFYRLNVIPLYIPPLREHIEDIPLLIDHFIKVLGGKLGKPDIVVSPRAVEKMLRYPW 424 Query: 413 PGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSV 472 PGNVR+L N + RA+ DG + I+ A + L E ER + Sbjct: 425 PGNVRELSNVVERAIYLCDGRVITEDHIVFAQAAVDQPAAAVNDAIPLLREAVEATERKL 484 Query: 473 LTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQ 508 + + R Y S R+ AK LGV+HT + N++++ + + Sbjct: 485 IAEAIRRYGSLRQAAKALGVTHTLLINRMKKLNIHK 520 >UniRef50_Q9ZIB7 Transcriptional regulatory protein tyrR n=263 Tax=Gammaproteobacteria RepID=TYRR_ENTAG Length = 521 Score = 594 bits (1533), Expect = e-168, Method: Composition-based stats. Identities = 374/520 (71%), Positives = 434/520 (83%), Gaps = 9/520 (1%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRR 60 MRLEVFC+DR+GL RELLDLLV R IDLRGIE+ GRIYLNF+ LEFE FS+LMAEIRR Sbjct: 1 MRLEVFCQDRIGLARELLDLLVARSIDLRGIEVAASGRIYLNFSTLEFEQFSNLMAEIRR 60 Query: 61 IAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRL 120 GVTDVRTVP+MPSEREH LSALL A+PEPV SVD+++KV++ANPA+ LF +++ Sbjct: 61 TPGVTDVRTVPYMPSEREHRVLSALLVAMPEPVFSVDLRTKVELANPAAQNLFNLDENKI 120 Query: 121 RNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQH-VLTGAV 179 RN TA LINGFNF RWLESE + +HVVI G++FLME P+YL ++NDQ L GA+ Sbjct: 121 RNFTADHLINGFNFARWLESERVQAQAQHVVIEGRDFLMEAHPIYLSEDNDQADQLVGAM 180 Query: 180 VMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTG 239 VML+ST RMGRQLQN+ D + F IVAV+P+M+ VVEQA+KLAM APLLI GDTGTG Sbjct: 181 VMLKSTARMGRQLQNLVVTDETEFDHIVAVTPRMRQVVEQARKLAMHDAPLLIIGDTGTG 240 Query: 240 KDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE-------GKKGFFEQANG 292 KD+ A ACH S R P+LALNCAS+P+D ESELFGHA GKKGFFEQANG Sbjct: 241 KDMLARACHLRSARGKMPFLALNCASLPDDVAESELFGHAAGAYPNALEGKKGFFEQANG 300 Query: 293 GSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMF 352 GSVLLDEIGEMSP MQ KLLRFLNDGTFRRVGE+HEVHV+VRVICATQKNL ELVQ+G F Sbjct: 301 GSVLLDEIGEMSPTMQTKLLRFLNDGTFRRVGEEHEVHVNVRVICATQKNLFELVQRGEF 360 Query: 353 REDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAW 412 REDL+YRLNVLTLNLPPLR+ QDIMPLTE+FVARFADEQG+PRP+L++ LN L RY W Sbjct: 361 REDLFYRLNVLTLNLPPLRERVQDIMPLTEIFVARFADEQGIPRPRLSSQLNAFLMRYNW 420 Query: 413 PGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSV 472 PGNVRQLKNA+YRALTQL+G+ELRPQDI+LP+ A V++GE+AMEG+LD+ITSRFERS+ Sbjct: 421 PGNVRQLKNALYRALTQLEGHELRPQDIVLPE-QALDVSLGEEAMEGTLDQITSRFERSI 479 Query: 473 LTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKKNE 512 LT+LY +YPSTRKLAKRLGVSHTAIANKLREYGL QK+ + Sbjct: 480 LTRLYLSYPSTRKLAKRLGVSHTAIANKLREYGLGQKRGD 519 >UniRef50_B2A3R3 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A3R3_NATTJ Length = 541 Score = 590 bits (1522), Expect = e-167, Method: Composition-based stats. Identities = 170/546 (31%), Positives = 281/546 (51%), Gaps = 45/546 (8%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFES--FSSLMAEI 58 R +V DR+G+ ++L ++ L+ I++ +E+ P L + +L+F +L + + Sbjct: 4 FRYQVQTVDRVGMVLDVLRVVYLKNINITAMEVAPQ----LIYLKLDFAPAMKGALESAV 59 Query: 59 RRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLD 118 + I GV + + +P E + L +L+ + E ++++D + M NP++ ++ + Sbjct: 60 KEIPGVRGIDEISLLPQEEKEQKLRGILDTIGEGIIALDKSGIITMINPSAEKILNLS-E 118 Query: 119 RLRNHTAAQLIN-GFNFLRWLESEP-QDSHNEHVVINGQN--FLMEITPVYLQDENDQHV 174 + +++ L+ L + D+ V + G +L P+ D N Sbjct: 119 NIEGRDIRDILSAELPILKTLSAGEDYDNKEIFVTLPGGKSHYLTSGRPIKNDDGNT--- 175 Query: 175 LTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITG 234 GAV ++ + + + + + +F I+A S M + A+K+A + +L+TG Sbjct: 176 -VGAVAAIKDINEVRKLVHRITHPTMLSFDDIIAESSIMNETISFAKKIAHGDSTVLLTG 234 Query: 235 DTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGF 286 ++GTGK+LFA A H SPR P++ LNCA+IPE +ESELFG+ GK G Sbjct: 235 ESGTGKELFARAIHMESPRKDCPFVPLNCAAIPETLMESELFGYEEGAFTGAKKGGKHGL 294 Query: 287 FEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVEL 346 FE AN G+V LDEIG ++P++Q KLLR L + RR+G E+ VD+RVI AT NL +L Sbjct: 295 FELANKGTVFLDEIGNLNPQLQVKLLRVLQEREVRRIGGKEEISVDIRVITATNHNLEKL 354 Query: 347 VQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTV 406 V +G FREDLYYRLNV+ + LPPLR+ +DI+PL + + G +L+ + Sbjct: 355 VNEGYFREDLYYRLNVIPIKLPPLRNRKEDIIPLANHILGQMRTNHGGQY-QLSPKSREL 413 Query: 407 LTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAM--------- 457 L Y+WPGNVR+L+N I RA+ + + + + D + GE Sbjct: 414 LKTYSWPGNVRELENIIERAVNLANDNIIEGEHLFFGQEDGFSNYEGEMENWEQNQQYQN 473 Query: 458 ------------EGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYG 505 + +I E+ +L ++ + S RK AK+LGVSHT I NK+++YG Sbjct: 474 GQSEAEISVNYKDKDFSQILQSVEKQILQKVLSEHASARKAAKQLGVSHTTILNKIKKYG 533 Query: 506 LSQKKN 511 L + Sbjct: 534 LQINQE 539 >UniRef50_UPI0000E0E363 sigma-54 dependent transcriptional regulator TyrR n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0E363 Length = 518 Score = 586 bits (1512), Expect = e-166, Method: Composition-based stats. Identities = 233/514 (45%), Positives = 338/514 (65%), Gaps = 7/514 (1%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRR 60 MRLE+ C+DRLG+ +++L+LL IDLRGIEI+ G+IYL+F +EF F M +IRR Sbjct: 1 MRLEISCQDRLGIAQDVLELLKAHEIDLRGIEINEAGKIYLSFPTIEFTDFQQFMPKIRR 60 Query: 61 IAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRL 120 I G+ DV+T +MP ERE L A+++ +P+PV S+D K ++ + N A+ ++ L Sbjct: 61 IEGIDDVKTTLFMPIERERNELKAIIQTMPDPVFSIDTKGRIVLFNDAAKFSVDNDINAL 120 Query: 121 RNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVV 180 + + GF F +WLES+ + + V Q+++ +I P+ + D +D+ +L GAVV Sbjct: 121 IKADIEEWVEGFKFEKWLESKETFAQTQKVKFVEQDYIADILPITVADNDDEEILAGAVV 180 Query: 181 MLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGK 240 +L+S +R+G+Q ++ +F + AVSP M VV +A ++A L P+LI G+TGTGK Sbjct: 181 ILKSELRLGQQFNTFHQKETDSFDKFHAVSPAMCKVVNEASRMADLDGPILIFGETGTGK 240 Query: 241 DLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPEG------KKGFFEQANGGS 294 +L A ACH+AS R P L LNC + +D +E+ELFG + G +A GG+ Sbjct: 241 ELIARACHEASSREEAPLLMLNCTANTDDIIETELFGTIEGSFGTQILRDGLLVKAQGGT 300 Query: 295 VLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFRE 354 +LLDEI +MS +Q+KLLR + DG FRR G++ + VDVR+IC T K+L LV+ G FR+ Sbjct: 301 LLLDEIADMSAYLQSKLLRVIEDGEFRRSGDEAPIPVDVRIICTTSKDLGLLVESGRFRQ 360 Query: 355 DLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPG 414 DLYYRLNVL+L +P LR+ QDI+PLTE F+ + G KL+ L Y WPG Sbjct: 361 DLYYRLNVLSLVMPALRERKQDIIPLTESFIKEHCIKLGRNVAKLSKSCVDYLNTYPWPG 420 Query: 415 NVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLT 474 NVRQL+NA+YRALT L+G E+ + I LP A TV+ ++ EG+LDE +FE+ +L Sbjct: 421 NVRQLQNALYRALTLLEGNEITKEHIHLPSC-ATTVSYIDENFEGTLDEEVKKFEKDLLR 479 Query: 475 QLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQ 508 +LY +YPSTR+LA++LG+SHTAIANKLREYG+++ Sbjct: 480 KLYPSYPSTRQLARKLGLSHTAIANKLREYGINK 513 >UniRef50_A0Q207 Transcriptional regulator n=3 Tax=Clostridium RepID=A0Q207_CLONN Length = 520 Score = 585 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 152/515 (29%), Positives = 277/515 (53%), Gaps = 11/515 (2%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRR 60 +R ++ EDR+G+T ++L + I++ IE+ P +++ ++ + + ++ Sbjct: 5 IRFKIVTEDRIGITFDILKKIYDLNINIVSIEVFPKT-VFIKIEDIYSHNKDLIKKKLYE 63 Query: 61 IAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRL 120 ++G+ V + + E+ L A+++A+ + V+ V+ +++ N ++F D + Sbjct: 64 VSGIIMVCEINLLEYEKNERKLLAIIDAVDDGVIYVNKNLNIEIFNSYCEKIFNCNKDDI 123 Query: 121 RNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVV 180 + ++ + ++S D N + IN + ++ + ++D G V Sbjct: 124 IDKDIRTVLEDPLIIDLIKSGK-DYKNVEIKINSKKGDIQYLTTGIAVKDDSGESIGVVS 182 Query: 181 MLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGK 240 + ++ V+ D AF I+ S +K V + ++ ++ +++ G++GTGK Sbjct: 183 SITDIKKVIELASVVSKMDKEAFGNIIGNSQAIKGVKNIVKTVSKSNSTVILRGESGTGK 242 Query: 241 DLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGFFEQANG 292 +LFA A + S R K ++ LNCA++PE+ +ESELFG+ GK+G F++AN Sbjct: 243 ELFARAIQRLSNRKDKRFVILNCAALPENLIESELFGYVKGSFTGANNNGKEGLFKEANE 302 Query: 293 GSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMF 352 G++ LDEIGE+S +QAKLLR L DG R++G E VDVR+I AT +NL E+V+KG F Sbjct: 303 GTIFLDEIGELSMVLQAKLLRVLQDGVVRKIGSCTEEKVDVRIIAATNRNLEEMVKKGEF 362 Query: 353 REDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAW 412 REDLYYRLNV+ + +P LR+ +DI + F+ + + + D L +Y W Sbjct: 363 REDLYYRLNVIPIFIPSLRERMEDIPDMVTFFIKKLNHKLSKKILGVKYDFIKELMKYNW 422 Query: 413 PGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAA-TVAVGEDAMEGSLDEITSRFERS 471 PGN+R+L+N + RA+ DG L + +++ Y ++ ++A + L +I E+ Sbjct: 423 PGNIRELQNVVERAMNLCDGKLLTKKHLMINSYINPISLDEVKEASDLKLKDIVEACEKE 482 Query: 472 VLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 + + + + RK AK LGVSHT I NK+++Y + Sbjct: 483 AIIKALKKNKTFRKTAKVLGVSHTTIINKIKKYNI 517 >UniRef50_B8G264 Putative sigma54 specific transcriptional regulator n=2 Tax=Desulfitobacterium hafniense RepID=B8G264_DESHD Length = 540 Score = 583 bits (1505), Expect = e-165, Method: Composition-based stats. Identities = 172/536 (32%), Positives = 280/536 (52%), Gaps = 29/536 (5%) Query: 3 LEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRRIA 62 + + DR GL ++ D +E+ ++ + F + E +L+ ++ + Sbjct: 8 VRIDFVDRPGLGYDIFQRFEDHNADKIVMEVSHGQQMMIKFRSPDQEGSETLIRDLLTVQ 67 Query: 63 GVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRN 122 GV V V +MP ER L +L+ + E +++V+ KV N + Q+F + N Sbjct: 68 GVVSVTLVDYMPYERREQELKTILDLVSEGIIAVNTNHKVTHINEVAAQIFHTTPEEALN 127 Query: 123 HTAAQLIN-GFNFLRWLESEPQDSHNEHVVINGQN---FLMEITPVYLQDENDQHVLTGA 178 A L L++ S E + Q FL P+ N + + G Sbjct: 128 QDAELLFEADAPIFETLKTGIPYSLKERKIRKNQKLIHFLTSGVPIL----NKRGQIIGG 183 Query: 179 VVMLRSTIRMGRQLQNVAAQDVS-AFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTG 237 V+ ++ ++ L V + S F I+ S +M+ ++E A+ +A ++ +L+ G++G Sbjct: 184 VMTIKDFRQVEELLSKVERKPQSINFDSIIYESRRMRDLIETAKTVARGTSTILLRGESG 243 Query: 238 TGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQ 289 TGK+LFA A H SPR+ + ++ +NCA++P+ +ESELFG+ GKKG FEQ Sbjct: 244 TGKELFAKAIHAESPRSRQAFIPINCAALPDTLLESELFGYEEGSFTGATKGGKKGLFEQ 303 Query: 290 ANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQK 349 A+GG++ LDEIGE++P++Q +LLR L +GT RR+G E+ VDVR+I AT +NL EL+ K Sbjct: 304 AHGGTLFLDEIGEITPQVQVRLLRVLQEGTIRRIGGSKEIPVDVRIIAATHRNLEELIDK 363 Query: 350 GMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTR 409 G FREDLYYRLNV+ L++P LR+ P+DI + ++ + A + G L + +L Sbjct: 364 GQFREDLYYRLNVIPLHIPSLRERPEDIPLIAQVLTRKIARKLGKSEVHLTKESADLLRA 423 Query: 410 YAWPGNVRQLKNAIYRALTQLDGYELRPQD----------ILLPDYDAATVAVGEDAME- 458 WPGNVRQL+N + R + E++P + + + + + E Sbjct: 424 QKWPGNVRQLENLLERIINLNSNSEIKPDSFYEWGDLTPALPVSESENTAHQLIIPFGEP 483 Query: 459 -GSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKKNEE 513 L +I ++ ER VL ++ +PS+RK K LGVS+T I NK+ YGL + E Sbjct: 484 WPPLKDIVAQVERQVLLKVLAEHPSSRKAGKILGVSNTTILNKMNSYGLGKMDEPE 539 >UniRef50_A5D2K0 Transcriptional regulator n=2 Tax=Clostridia RepID=A5D2K0_PELTS Length = 568 Score = 583 bits (1504), Expect = e-165, Method: Composition-based stats. Identities = 139/516 (26%), Positives = 246/516 (47%), Gaps = 23/516 (4%) Query: 8 EDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDV 67 +D + +T +L+ +D+ IE + + ++ S + + A+ + Sbjct: 48 KDGVFVTENFCELVKFNNLDVI-IETTGVPEVQEKLRQIRGNSTALMEAQAANLMMAILK 106 Query: 68 RTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQ 127 + +R LSA+L ++ E + D+ + NPA ++ G + Sbjct: 107 EKEELLEFKRIQGELSAILNSMQEAIEVADINGVIKYVNPAFSRITGIPEKERIGQNIFE 166 Query: 128 LINGFNFLRWLESEPQDSHNEHVVINGQ--NFLMEITPVYLQDENDQHV--------LTG 177 L++ + + G + + P+ + + + V + Sbjct: 167 ASPDGALATVLKTGK-VVFGQRTKVGGSNADVVSNSAPIVVDGKMEGAVCVFQHFTDIMN 225 Query: 178 AVVMLRSTIRMGRQLQNVAAQ---DVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITG 234 + L+ + + L + Q +F I+ SP+++ + A+K A ++ +LI G Sbjct: 226 LMEELKKSTTIIENLTDKLGQVTTSKYSFDDIIGDSPELRKCITLAEKSAQSNSTVLILG 285 Query: 235 DTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPEG-------KKGFF 287 ++GTGK+L A+A H AS R P++ +NCA+IP+ +ESE FG+A K G F Sbjct: 286 ESGTGKELLAHAIHAASMRRENPFIKVNCAAIPDTLLESEFFGYAKGAFTGAVKSKIGKF 345 Query: 288 EQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELV 347 E A+GG++ LDEIG+M+ +QAKLLR L + F RVG + + VDVRVI AT +NL EL+ Sbjct: 346 ELAHGGTIFLDEIGDMNLLLQAKLLRVLQEMEFERVGGNQTIKVDVRVIAATNRNLRELI 405 Query: 348 QKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVL 407 ++G FREDLYYRLNV+ + +PPLR +D+ L + + G ++ D VL Sbjct: 406 RQGRFREDLYYRLNVVEITMPPLRARKEDLPALVSHLITSLNRKLGKNVKGISKDAEEVL 465 Query: 408 TRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSR 467 Y WPGNVR+L+N I R + D L ++ + + ++ D ++++ Sbjct: 466 FSYDWPGNVRELENVIERVMVTADEEILTKKNF-IQHVNQFRMSSERDVDLMPIEQMEEM 524 Query: 468 FERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLRE 503 R +++ R+ A+ L +S + NKL++ Sbjct: 525 LIRKAISKFGNTVEGKRRAAQALNISLATLYNKLKK 560 >UniRef50_B1JB99 Sigma-54 factor interaction domain-containing protein n=22 Tax=Pseudomonadaceae RepID=B1JB99_PSEPW Length = 531 Score = 577 bits (1489), Expect = e-163, Method: Composition-based stats. Identities = 214/518 (41%), Positives = 299/518 (57%), Gaps = 24/518 (4%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRR 60 MR+ V DR+G+T+E+L LL R ++L +E+ P +Y++ L L + Sbjct: 29 MRIHVSFIDRVGITQEVLALLGARNLNLDAVEMVPPN-VYIDAPTLSPAVLEELHDALFE 87 Query: 61 IAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRL 120 + GV V V +P +R HL L ALL A+ +PVL+VD V +ANPA L G++ Sbjct: 88 VHGVQSVDVVDILPGQRRHLQLDALLAAMSDPVLAVDSAGLVLLANPALIALCGRESA-- 145 Query: 121 RNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVV 180 + +L L+ L + +NGQ+ L++ TP+ G ++ Sbjct: 146 -GRSVGELFGDPGLLQALLDNNFHLPMREMQLNGQSLLLDATPITN---------AGGLL 195 Query: 181 MLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGK 240 L RMG +L + F ++ SP ++ + +A ++A L APLL+ G+TGTGK Sbjct: 196 TLYPPNRMGERLSALHHDHAEGFDALLGESPAIRTLKARALRVAALDAPLLVHGETGTGK 255 Query: 241 DLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGFFEQANG 292 +L A ACH S R P+LALNCA++PE ESELFG+AP GK G E AN Sbjct: 256 ELVARACHAISSRQAAPFLALNCAALPESLAESELFGYAPGAFTGAQRGGKPGLMELANQ 315 Query: 293 GSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMF 352 G+V LDEIGEMSP +QAKLLRFL+DG+FRRVG D EV VDVR+I AT ++L +V +G F Sbjct: 316 GTVFLDEIGEMSPYLQAKLLRFLSDGSFRRVGGDREVKVDVRIISATHRDLERMVAEGTF 375 Query: 353 REDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAW 412 REDL+YRLNVL L +PPLRD QDI+ L F+ + + P +L ++ L W Sbjct: 376 REDLFYRLNVLNLQVPPLRDRGQDILMLAHYFMQQACTQIQRPACRLTPATHSALLANPW 435 Query: 413 PGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSV 472 PGNVRQL+N I+RA + + D+ D +VA G+D SL++ FER + Sbjct: 436 PGNVRQLQNVIFRAAAICESNLVDIGDL---DIAGTSVARGQDGEVASLEQAVGDFEREL 492 Query: 473 LTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKK 510 L +LY +YPSTR+LA RL SHTAIA +LR+YG+ + K Sbjct: 493 LQRLYASYPSTRQLAGRLQTSHTAIAQRLRKYGIPKAK 530 >UniRef50_A1VG32 Sigma54 specific transcriptional regulator, Fis family n=5 Tax=Desulfovibrionales RepID=A1VG32_DESVV Length = 539 Score = 576 bits (1487), Expect = e-163, Method: Composition-based stats. Identities = 155/524 (29%), Positives = 256/524 (48%), Gaps = 24/524 (4%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIG---RIYLNFAELEFESFSSLMAE 57 ++LE+ +DR+G+ ++ LL G + +E++ +++ +F++L Sbjct: 16 LKLELVFKDRVGIVSDVSSLLAGEGYSIVCMEVERRHDRSHVHIEADGAGEGAFAALRQR 75 Query: 58 IRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKL 117 + G+ + R V +P+E + +L+ + + V+S+D ++ N + + +G Sbjct: 76 FESMRGLLECREVQTLPAEERENRIKVVLDTIGDGVMSIDGGGRITSINKVAREAYGCAG 135 Query: 118 DRLRNHTAAQL-INGFNFLRWLESEPQDSHNEHV--VINGQNFLMEITPVYLQDENDQHV 174 + + + L + L L + + F + TP+ + Sbjct: 136 EDVTERSLTSLRLPDHGLLDCLHGRELHDARRELATPLGKLQFFVTRTPIR----DGVGR 191 Query: 175 LTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITG 234 + GAV + R + + + + D F IV P ++ + A+++A A + I G Sbjct: 192 IIGAVEIARDMREIRKLARTLVDADHVGFDDIVGHHPAIEAAIAFARRVAATDAVIAIRG 251 Query: 235 DTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGF 286 ++GTGK+LFA A H S R P++ +NCA++PE +ESELFG+ GK G Sbjct: 252 ESGTGKELFARAMHAESGRK-GPFVPINCAALPEQLLESELFGYERGAFTGGRREGKPGL 310 Query: 287 FEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVEL 346 FE A GG+V LDEIG+M QAK+LR + + RR+G + EV VD R+I AT + L + Sbjct: 311 FESARGGTVFLDEIGDMPLASQAKILRVMQEQRVRRIGGEAEVPVDARIITATNRPLERM 370 Query: 347 VQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTV 406 V+ G FR+DLYYR+NVL +++PPLR+ DI L F+ + A G P Sbjct: 371 VEDGRFRQDLYYRINVLPMHIPPLRERRGDIPLLANHFLQQLASRIGGAAPAFTDGALAR 430 Query: 407 LTRYAWPGNVRQLKNAIYRALTQL-----DGYELRPQDILLPDYDAATVAVGEDAMEGSL 461 L + WPGNVR+LKN + RA D + L A +L Sbjct: 431 LRSHEWPGNVRELKNVVERAAILAGGAVVDDQFILFSHELGKGVFNAARTASAAGQGDTL 490 Query: 462 DEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYG 505 E + FE+ ++ + R PS RK AK LG+SHTA+ +K+R +G Sbjct: 491 KEQVANFEKKIVEDVVRRAPSIRKAAKILGISHTALLDKMRRHG 534 >UniRef50_C6Q1R8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Clostridium RepID=C6Q1R8_9CLOT Length = 525 Score = 575 bits (1483), Expect = e-162, Method: Composition-based stats. Identities = 156/524 (29%), Positives = 269/524 (51%), Gaps = 22/524 (4%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFS-SLMAEIR 59 +RLE+ +DR+G+ ++L L I + +E+ P ++Y+ L+ + S++ ++ Sbjct: 5 LRLEIISKDRIGMVLDILKKLYENNISIHSLEVFP-NKVYIKVENLQESAKKVSIIKKLL 63 Query: 60 RIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDR 119 I GV V+ V + E+ L A+++A+ + +L+++ ++++ N ++F K + Sbjct: 64 NIDGVIKVQEVELLSYEKNERKLLAIIDAVQDGILAINHNEQIELFNNYCEKIFHTKKEY 123 Query: 120 LRNHTAAQLIN-GFNFLRWLESEPQDSHNEHVVINGQ---NFLMEITPVYLQDENDQHVL 175 + QL+ + L++ + E N + +++ V Sbjct: 124 IVGKNIRQLLGFDAPIINLLKTGKDYDNIEIFTKNAKSNFHYITSGRSVKDDKGQTLA-- 181 Query: 176 TGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGD 235 AV L+ + +++ AF I+ S M + +A ++ +L+ G+ Sbjct: 182 --AVASLKDINEAIEMTNVITSKEDLAFKDIIGNSASMVKTRKICMAVANGNSTILLRGE 239 Query: 236 TGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGFF 287 +GTGK+L+A A H+ S R+ K +LA+NCA++P++ +ESELFG+ GK G F Sbjct: 240 SGTGKELYAKAIHKLSSRSSKNFLAINCAALPDNLIESELFGYEKGSFTGAIEKGKDGLF 299 Query: 288 EQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELV 347 + A+ G++ LDEIGE+S +QAKLLR L +GT R++G E +DVR+I AT +NL +++ Sbjct: 300 KAAHNGTLFLDEIGELSLSLQAKLLRVLQEGTIRKIGSTIEQKIDVRIIAATNRNLEDMI 359 Query: 348 QKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVL 407 K FREDLYYRLNV+ + +P L+D +DI L F+ + G L Sbjct: 360 SKNTFREDLYYRLNVIPIYIPCLKDRIEDIPMLVNFFIKNLNKQMGKNIKGAEMAFIEKL 419 Query: 408 TRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGS----LDE 463 WPGNVR+LKN + RA+ G L+ +++++ + D E + L + Sbjct: 420 VNSNWPGNVRELKNVVERAMNLCHGSLLKEENLIMDFEKNSNYETASDDYEFNFNFKLKD 479 Query: 464 ITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 + E+ L + Y S RK AK LGVSHT I NKL +Y + Sbjct: 480 VVEAAEKKALISAIKKYKSCRKAAKALGVSHTTIINKLNKYKID 523 >UniRef50_Q12L04 Transcriptional regulator, TyrR n=3 Tax=Shewanella RepID=Q12L04_SHEDO Length = 512 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 244/514 (47%), Positives = 339/514 (65%), Gaps = 6/514 (1%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRR 60 MRLEV C DR+GL +++L +L GI+L I+ G +YL FAE+ FE+ LM IR+ Sbjct: 1 MRLEVSCIDRVGLAKDILVILERYGINLIAIDASNRGFLYLQFAEISFETLRELMPLIRK 60 Query: 61 IAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRL 120 + V DVRTV +MPSE+EH AL LL+ LP+ V S++ K ++ + N ++ + Sbjct: 61 VESVHDVRTVSFMPSEQEHYALKTLLQTLPDSVFSINAKGRIRIVNESALLTLSMAEHEV 120 Query: 121 RNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVV 180 + + + GFNF RWL + V I +L E+ P+YL DEND +L GAVV Sbjct: 121 LDESLNHWVQGFNFGRWLSEPQVLAQATRVTIGTNEYLAEMLPIYLPDENDSQILAGAVV 180 Query: 181 MLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGK 240 L+S R+G+Q + Q + F ++A+S KMK V++QA+++A L APLLITG+TGTGK Sbjct: 181 SLKSPARVGKQFNALQNQ-TTGFESVLAMSDKMKDVLKQARRMAQLDAPLLITGETGTGK 239 Query: 241 DLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPEG---KKGFFEQANGGSVLL 297 +L A A H AS R KP++A+NCA++P+ A E ELFG +G K+G FE+A+GG+V L Sbjct: 240 ELMARASHDASMRREKPFIAINCAALPDSAAEEELFGFVNQGTVVKRGLFEEASGGTVYL 299 Query: 298 DEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLY 357 DEI EMS Q KLLRFL DG FRR+G D EV DVR+IC+TQKNL EL Q FREDLY Sbjct: 300 DEIAEMSKTAQVKLLRFLQDGCFRRIGGDEEVRADVRIICSTQKNLAELCQTDEFREDLY 359 Query: 358 YRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVR 417 YR++VL+ ++P LR+ D++PLTE+F+ ++ + P +++A L YAWPGNVR Sbjct: 360 YRIHVLSYHMPALRERKVDVIPLTEMFLEHYSQQLSSPLRRISASCRDYLFSYAWPGNVR 419 Query: 418 QLKNAIYRALTQLDG-YELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQL 476 QLKNA++RA++ DG EL + + LP Y A ++ EGSLD+ +E +L +L Sbjct: 420 QLKNAVFRAVSMWDGATELTVEQLKLPSY-AEGFGYFDEEFEGSLDDAMKEYEAGLLRRL 478 Query: 477 YRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKK 510 Y YPSTR+LAK+LGVSHTAIANKLR+Y + +K+ Sbjct: 479 YPAYPSTRQLAKKLGVSHTAIANKLRDYQIVKKR 512 >UniRef50_B8FXH0 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FXH0_DESHD Length = 703 Score = 567 bits (1462), Expect = e-160, Method: Composition-based stats. Identities = 138/506 (27%), Positives = 241/506 (47%), Gaps = 31/506 (6%) Query: 24 RGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALS 83 RGI + E++ + +A + I + +V +E+ L Sbjct: 206 RGIPMSYGELNTKADF---LPIILGHKVLGAVAVFKDITELEEVSH-RLNSNEKLMATLE 261 Query: 84 ALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQ 143 A++E E ++ +D + + + N + G K+ + + + + L+S Sbjct: 262 AVVENSYEGMVVIDDQENIVLMNQFFLDVIGVKVQDVIGKKINDISPNSSLPQTLKSGKA 321 Query: 144 DSHNEHVVINGQNFLMEITPV-------------YLQDENDQHVLTGAVVMLRSTIRMGR 190 E + G++F++ P+ ++ + V+ L + + Sbjct: 322 QF-GETWHLKGRDFIIMRVPIEREGKVVGALAKTLFKNMEIAKMFAKKVMRLEENLAYYK 380 Query: 191 QLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQA 250 + F I+ SP+MK A + + ++ +LI G++GTGK++F++A H++ Sbjct: 381 EELGKFHSSQFVFDDIIGESPRMKKAKSLAHRASQTTSTILILGESGTGKEVFSHAIHKS 440 Query: 251 SPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGE 302 S R+ PY+ +NCA++PED +ESELFG+ GK G FE A+ G++ LDEIG+ Sbjct: 441 SIRSNGPYIKVNCAALPEDLLESELFGYDEGAFTGARKGGKPGKFELADKGTIFLDEIGD 500 Query: 303 MSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNV 362 MS MQAKLLR L + R+G + VDVR+I AT ++L ++V + FR DLYYRLNV Sbjct: 501 MSLGMQAKLLRVLQERELERLGGTEPIKVDVRIIAATNRDLHKMVMEHKFRLDLYYRLNV 560 Query: 363 LTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNA 422 LT++LPPLR+ +DI + + + G + + T L Y WPGN+R+L+N Sbjct: 561 LTIDLPPLRERKEDIGFIARGLIEKINKRLGTDIQGVRPESITHLCAYDWPGNIRELENI 620 Query: 423 IYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRN-YP 481 + RA+ D + P+ + LP + E +L+ ER +L + R Sbjct: 621 LERAIVICDEAWILPKHLALP----GVMETITLGAEQTLEYALQAAEREILDKTLRRVQG 676 Query: 482 STRKLAKRLGVSHTAIANKLREYGLS 507 + + A+ LG+ + + KL +Y + Sbjct: 677 NKVQAARILGIHRSVLYKKLAKYNIQ 702 Score = 76.9 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 16/115 (13%), Positives = 43/115 (37%), Gaps = 6/115 (5%) Query: 86 LEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDS 145 +EA+ V+++D + ++ NP++ +L G + + + L + ++ Sbjct: 147 IEAVHNAVVAIDAQGRIVFFNPSAEKLLGFHAEEVLGKPIKNFFPDSLTFKALATG-EEL 205 Query: 146 HNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDV 200 + N + P+ L H + GAV + + + + + + Sbjct: 206 RGIPMSYGELNTKADFLPIIL-----GHKVLGAVAVFKDITELEEVSHRLNSNEK 255 >UniRef50_C8X2X5 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X2X5_DESRD Length = 525 Score = 566 bits (1459), Expect = e-160, Method: Composition-based stats. Identities = 153/522 (29%), Positives = 261/522 (50%), Gaps = 19/522 (3%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSS---LMAE 57 ++L++ DR+G+ ++ +L I++ +E+D G + E + E S LM Sbjct: 2 IKLQLIFRDRVGIIADITAMLGEDSINILSMEVDASGDRTFVYFETQAEDLCSSDDLMRR 61 Query: 58 IRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKL 117 ++ I G+ ++ T+ MP E+ +L +L ++ + ++++D ++ +AN + +FG K Sbjct: 62 LKEIPGLLEISTIRTMPQEKRERSLEVILNSVSDGIVAIDEHRRIIVANRVARNIFGCKD 121 Query: 118 DRLRNHTAAQL-INGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLT 176 + L + + L L + + F + +D N + Sbjct: 122 PEIIGRPIQALNLPDLSMLECLRGKRYHNVPRKCQTPAGLFHFFASAQPFKDSNG--RIV 179 Query: 177 GAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDT 236 GAV +++ + + VA F I+ SP + + A+++A +A + I G++ Sbjct: 180 GAVEVMKDMKEIKQLANFVADPARITFEDIIGKSPAITSAIAFAKQVARSNAVISIRGES 239 Query: 237 GTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFE 288 GTGK+LFA A H AS +L +NCA++PE +ESELFG+ +GK G FE Sbjct: 240 GTGKELFAQAIHHASG-LSGLFLPINCATLPEQLLESELFGYEGGSFTGADKQGKVGLFE 298 Query: 289 QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQ 348 +A G++ LDEI EM P QAKLLR + + RR+G E+ ++ R++ AT KNL +V+ Sbjct: 299 KAKDGTIFLDEIAEMPPNCQAKLLRVIQERRVRRIGGSAEIPINARIVTATSKNLESMVR 358 Query: 349 KGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLT 408 +FR+DLYYR+NVL + LP LR+ +DI L E F+ + + L L+ Sbjct: 359 DNLFRDDLYYRINVLPIYLPALRERLEDIPLLAEHFLFQLNYKLNKGHQLLTKGALEKLS 418 Query: 409 RYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLP----DYDAATVAVGEDAMEGSLDEI 464 +AWPGN+R+L+N I RA ++ + IL V L + Sbjct: 419 GHAWPGNIRELRNVIERAAILGGANQISQECILFSFEVGQRQEDPGGVYPSCSVEGLRDQ 478 Query: 465 TSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 ER +L Q S R+ A++L +SH+A+ NK+R++ L Sbjct: 479 LDSLERKLLQQALDRTASIRQAARQLRISHSALLNKMRKHKL 520 >UniRef50_C8W252 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W252_DESAS Length = 591 Score = 565 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 127/476 (26%), Positives = 221/476 (46%), Gaps = 27/476 (5%) Query: 56 AEIRRIAGVTDVRTVPWMPSE-----REHLALSALLEALPEPVLSVDMKSKVDMANPASC 110 + + D+ + + +E L +++ + L V+ + V N A Sbjct: 118 KVVGAVGVAQDITELQQIANELNSVNEMKSTLETIIDTGHDGYLVVNKEGYVITLNKAYA 177 Query: 111 QLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDEN 170 +L + ++I ++ E + + G+ ++ P+ Sbjct: 178 ELIDINPEDAIGRHIKEVIPETELHLVSQTGKTQI-GEVLRVKGREAVVMRYPINKDGRI 236 Query: 171 DQHV----------LTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQA 220 V + + S+ R + A ++ S M + E Sbjct: 237 IGAVSKVMFRDVNQFITSAKTVYSSQRRIKGEPEQWASARYTVDNLIGKSHPMLRLKETV 296 Query: 221 QKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA- 279 +++A+ + +LI G++GTGK+L A++ H S R P++ +NCA++PE+ +ESELFG+ Sbjct: 297 RRVALGPSTVLIRGESGTGKELLAHSLHVGSNRCLGPFVKVNCAAVPENLLESELFGYVE 356 Query: 280 -------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVD 332 G+ G FEQANGG++ LDEIG+M MQAKLLR L + R+G++ HV+ Sbjct: 357 GAFTGAKKGGQIGKFEQANGGTIFLDEIGDMPLLMQAKLLRVLQEKEIERLGDNRARHVE 416 Query: 333 VRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQ 392 VRV+ AT + L +++ FREDLYYRLNV+TL +P LR+ D+ L E F+A++ Sbjct: 417 VRVVAATNRPLEQMIADNTFREDLYYRLNVVTLQIPSLRERIDDLKDLVEYFLAKYNHAF 476 Query: 393 GVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAV 452 G+ L+AD + Y WPGNVR+L+N + RA +DG+ + + Sbjct: 477 GLNITGLSADALELFENYNWPGNVRELENVVERAFNLVDGHIIDVMHLPPYLQKFGKSK- 535 Query: 453 GEDAMEGSLDEITSRFERSVLTQLYR-NYPSTRKLAKRLGVSHTAIANKLREYGLS 507 ++ SL + + E+ + + + AK LG+S + K+ +YG+ Sbjct: 536 -RHSINKSLPSLLEQVEKEAIADALSVTNGNKMQAAKILGISRAWLYKKIAQYGIK 590 Score = 78.1 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 51/125 (40%), Gaps = 8/125 (6%) Query: 85 LLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQD 144 +L A+ V++VD K+ + N +LF ++ ++++ L+ L++ Sbjct: 35 VLNAIYNVVIAVDYSGKIIVYNHGCERLFKVPAEKAMGRFVSEVVPMTGLLKVLKTGNSH 94 Query: 145 SHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAA--QDVSA 202 + V +++ TP+ ++ + GAV + + + + + + + S Sbjct: 95 IGRKFVQ-GNSLYIVNRTPILHDNK-----VVGAVGVAQDITELQQIANELNSVNEMKST 148 Query: 203 FSQIV 207 I+ Sbjct: 149 LETII 153 >UniRef50_A5D1E1 Transcriptional regulator n=3 Tax=Bacteria RepID=A5D1E1_PELTS Length = 507 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 143/470 (30%), Positives = 242/470 (51%), Gaps = 30/470 (6%) Query: 67 VRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAA 126 VR + + + R L +LEA + + D + + N A ++ G D + A Sbjct: 21 VRNMGILEARRFASELEQVLEASHDGIFITDGQGVILRVNSAWERICGISRDFVVGKNAQ 80 Query: 127 QLIN-----GFNFLRWLESEPQDSHNEHVVIN---GQNFLMEITPVYLQDENDQHVLTGA 178 ++++ + L+++ + + + GQ + PV + N + V+ Sbjct: 81 EMVDKGFWSESAAICALKAKKEVTIMLKMTKGEKVGQKIMATGIPVMDDEGNIKRVVVNV 140 Query: 179 -----VVMLRSTIRMGRQLQNVAAQDVSA-------FSQIVAVSPKMKHVVEQAQKLAML 226 +V LR + +QL A ++ + IVA SPK K V++ A ++A + Sbjct: 141 RDITEIVNLRDQLEETQQLNEKYAAELEQMRIQHVQYDNIVASSPKTKRVLDMAAQVAKV 200 Query: 227 SAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA------- 279 + +LITG++G GK++ A H S R+ P + +NC +IPE+ +ESELFG+ Sbjct: 201 DSTVLITGESGVGKEIVANVIHCLSHRSKGPLIKINCGAIPENLLESELFGYEPGAFTGA 260 Query: 280 -PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICA 338 +GK G FE A G++ LDE+GE+S +Q KLLR L D RVG + VDVR++ A Sbjct: 261 RKQGKPGMFELAEKGTLFLDEVGELSLNLQVKLLRVLQDHEVLRVGGLKPIPVDVRIVAA 320 Query: 339 TQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPK 398 T K+L+E+V+K FR+DLYYRLNV+++ +PPLR+ +DI L F+ + + G + Sbjct: 321 TNKDLMEMVRKEKFRDDLYYRLNVVSIEIPPLRERREDIPLLALHFLEKINKKYGFN-KR 379 Query: 399 LAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVA-VGEDAM 457 A D+ L+ Y WPGN+R+L+N I R + E+R + + +++ + Sbjct: 380 FAPDVIDRLSAYPWPGNIRELENVIERVMVMTKSDEIRTIHLPGNIKNLSSLQNDIMFSE 439 Query: 458 EGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 L + E+ ++ Q + Y STRK+A+ L V+ + I K+++Y LS Sbjct: 440 IMPLKKAVEHVEKHLIEQALKKYGSTRKVARALKVNQSTIVRKIKKYKLS 489 >UniRef50_Q897M6 Transcriptional regulatory protein n=1 Tax=Clostridium tetani RepID=Q897M6_CLOTE Length = 567 Score = 564 bits (1455), Expect = e-159, Method: Composition-based stats. Identities = 134/469 (28%), Positives = 230/469 (49%), Gaps = 29/469 (6%) Query: 62 AGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLR 121 A V DV E+ LS +LE + ++ +D + M N G +R Sbjct: 104 ANVIDVMYEELKAKEKNLKILSFILELAYDGLVVIDKYGYITMINKTYADFLGVDQERSI 163 Query: 122 NHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDE------------ 169 ++I ++ ++ + + G+ + PV E Sbjct: 164 GKHVTEVIESTRMHIVAKTGIAETA-QLQKVKGKYMIANRIPVIENGELVAVAGKVLFKN 222 Query: 170 -NDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSA 228 + +L + + + + + + + +F I+ S K+ + A+K A ++ Sbjct: 223 IKELDLLYKKIRNIENEYKKYKGQFDESNSASYSFDNIIGKSDKINKTKDLAKKAAKTNS 282 Query: 229 PLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------P 280 +LI G++GTGK+LFA+A H S R ++ LNCA+IP D +ESELFG+ Sbjct: 283 NVLIRGESGTGKELFAHAIHMESERVYGNFIKLNCAAIPRDLLESELFGYEGGAFTGAKK 342 Query: 281 EGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQ 340 EGK G FE A+GG++ LDEIG+M MQAKLLR L + R+G +DVRVI AT Sbjct: 343 EGKIGKFELADGGTIFLDEIGDMPLHMQAKLLRVLQEREVERIGATRSKKIDVRVISATN 402 Query: 341 KNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLA 400 ++L +++++G FREDLYYRLNV+T+N+PPLR+ +DI L+E + + + + G + Sbjct: 403 RDLEKMIKEGEFREDLYYRLNVVTVNIPPLRERREDIKILSEYLLEKISKKLGKKTKSFS 462 Query: 401 ADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYE-LRPQDILLPDYDAATVAVGEDAMEG 459 + + L Y W G VRQL+N I RA+ ++ E + P+ + D Sbjct: 463 KEAMSCLMNYKWEGGVRQLENIIERAVNLVEHNEMIEPKHFPGNIVSNKYIVEDSD---- 518 Query: 460 SLDEITSRFERSVL-TQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 L+++ ++ E+ ++ L + AK+L +S T++ K+ ++ ++ Sbjct: 519 -LNKLINQVEKDIILETLIYCNWNKTLAAKKLNISRTSLYEKIAKHNIA 566 >UniRef50_B8F9P3 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8F9P3_DESAA Length = 699 Score = 563 bits (1451), Expect = e-159, Method: Composition-based stats. Identities = 152/482 (31%), Positives = 247/482 (51%), Gaps = 40/482 (8%) Query: 64 VTDVRTVPWMPSEREH-----LALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLD 118 + D+ + + +E EH + L A++E+ + + D + + N A + G + + Sbjct: 221 LQDISELEAISNELEHTRRISMELDAIIESSFDGIYVTDGEGRTLRVNKAYERTTGIRRE 280 Query: 119 RLRNHTAAQLINGFNF-----LRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQH 173 + HT A+L+ F +R LE+ +S + V G+ ++ TP++ Sbjct: 281 DVVGHTMAELVEQGFFNESVSMRVLENRKGESLVQKVK-TGKTVMVTGTPIFDDKGE--- 336 Query: 174 VLTGAVVMLRSTIRMGRQLQNVAAQD------VSAFSQI----------VAVSPKMKHVV 217 ++ V +R + + + + Q+ V S KMK V Sbjct: 337 -ISLVVTNVRDVTELYNLQNELGRMEVLRTWYENELEQLRESAGAAPSVVIRSKKMKEVH 395 Query: 218 EQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFG 277 E A +LA + A +L+ G++G GK++FA H SPR KP++ ++CA+IPE +ESELFG Sbjct: 396 ELAMRLARVDATVLVQGESGVGKEIFADLIHTNSPRKDKPFVKISCAAIPEQLLESELFG 455 Query: 278 HAPE--------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEV 329 + GK G FE A+GG++ LDEIGEM +QAKLLR L D RVG +H + Sbjct: 456 YEAGAFTGAKAKGKAGIFESADGGTIFLDEIGEMPLSLQAKLLRVLQDKKIMRVGANHSM 515 Query: 330 HVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFA 389 VD+R++ AT ++L ++V KG FR DLY+RLNV+ + +PPLR+ + I+ F+ ++ Sbjct: 516 DVDIRILAATNRDLSQMVHKGAFRNDLYFRLNVVPVVIPPLRERKEAIVNFAYHFLEKYN 575 Query: 390 DEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAAT 449 + G ++A D+ +L Y WPGNVR+L+N + R + G + P D+ A Sbjct: 576 RKYGF-AKQIAPDVLDILYDYDWPGNVRELENTVERMVVVTKGDVIEPADLPEKLRIAPK 634 Query: 450 VAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQK 509 + GSL ER +L Q + ST K+AK LGV+ + + KL+ YG+ K Sbjct: 635 SGLAHALGGGSLKSALEGLEREILQQALETHGSTHKVAKALGVNQSTVVRKLQRYGIDPK 694 Query: 510 KN 511 K+ Sbjct: 695 KS 696 Score = 88.5 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 63/163 (38%), Gaps = 11/163 (6%) Query: 53 SLMAEIRRIAGVTDVRTVPWMPSERE---HLALSALLEALPEPVLSVDMKSKVDMANPAS 109 L+AE RI GV V + +S L+++ PV+++D + V N + Sbjct: 95 WLVAESGRIIGVVSRSRVSEQIHKGSLSVMRRMSIFLDSIYNPVVAIDAEGLVIFCNKSL 154 Query: 110 CQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDE 169 ++ G+ ++ + L +R + + + + V + G+ ++ TP+++ Sbjct: 155 AKVSGKSVEEILGKPIGDLFEDSQLIRIIRTGKAE-STQKVRLGGKVYMTNRTPIFM--- 210 Query: 170 NDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSA--FSQIVAVS 210 + GA +L+ + + + I+ S Sbjct: 211 --GGRIVGATAVLQDISELEAISNELEHTRRISMELDAIIESS 251 >UniRef50_A6FE33 Sigma-54 dependent transcriptional regulator TyrR n=1 Tax=Moritella sp. PE36 RepID=A6FE33_9GAMM Length = 522 Score = 563 bits (1451), Expect = e-159, Method: Composition-based stats. Identities = 237/524 (45%), Positives = 338/524 (64%), Gaps = 17/524 (3%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRR 60 MRLE+ CEDR+G++RE+LD + R I+L IEI RI++ LEF +LMA +RR Sbjct: 1 MRLELVCEDRVGISREILDCFLARDINLSAIEIQQPDRIFIKSPNLEFSDLQALMANLRR 60 Query: 61 IAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRL 120 I+GV DV+TV ++PSE EH + L+ LP+ V SVD+K V + N + G ++ Sbjct: 61 ISGVCDVKTVSYLPSELEHQEIQTLMTNLPDIVFSVDVKGLVSLVNTPALTALGLLESQV 120 Query: 121 RNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQ-------- 172 + H + + GF+ +WLESE + + + + ++F +I P+ + + +Q Sbjct: 121 KGHCISNFVKGFSITKWLESEEVCAQTQKLTLLDEDFFGDILPLSISSDVNQVTLSKAAV 180 Query: 173 ----HVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSA 228 H L GAV++L+S R+G+Q + +AF +I A S KM ++ A+K A+L A Sbjct: 181 SVKPHELVGAVIILKSVDRIGKQFNFLRTFQFAAFDEIFAKSDKMNKLINTAKKFAILDA 240 Query: 229 PLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPEG---KKG 285 PL+I G+TG GK+L A ACHQAS R+ +LALNCA++P+ ESELFG + K+G Sbjct: 241 PLMILGETGAGKELIAKACHQASGRSQHQFLALNCAAVPDAVAESELFGVVTDDGETKRG 300 Query: 286 FFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVE 345 FE AN GSVLLDEIG+MSP +Q K LR L G FRRVG++ EV VDVR+IC TQ +L + Sbjct: 301 IFELANEGSVLLDEIGDMSPYLQTKFLRLLETGCFRRVGDEQEVRVDVRIICTTQNDLAK 360 Query: 346 LVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNT 405 L+ +G FR+DLYYRLNVL++ +P LR+ +DI+PL F + F+ E +P+L+ ++ Sbjct: 361 LISEGKFRQDLYYRLNVLSMTVPALRERKEDIIPLCHSFCSVFSHELQRTKPQLSRNVLE 420 Query: 406 VLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEIT 465 +L Y WPGNVR+L+N +Y AL+ L+G L P D+ L T E +GSLDE Sbjct: 421 LLQSYPWPGNVRELRNVLYHALSLLEGDVLNPCDLNLSAT--TTETYDEALFDGSLDEAC 478 Query: 466 SRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQK 509 RFE+ +L +LY +YPSTR+LAKRLGVSHTAIANKLR+Y +++K Sbjct: 479 KRFEKLLLQRLYPSYPSTRQLAKRLGVSHTAIANKLRDYKITKK 522 >UniRef50_C9KM56 Sigma-54 dependent transcriptional regulator/sensory box protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KM56_9FIRM Length = 560 Score = 561 bits (1446), Expect = e-158, Method: Composition-based stats. Identities = 145/490 (29%), Positives = 231/490 (47%), Gaps = 38/490 (7%) Query: 40 YLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMK 99 + F E +F +M E I GV + + ER L +LE++ + + VD Sbjct: 85 MVRFLESDF-----IMNEASEIHGVDKLLHENALMQER----LQMILESVQDGICVVDRS 135 Query: 100 SKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLM 159 +V NP+ ++ + + + + N L S + +G + Sbjct: 136 GEVTYVNPSYLRIVHKTPEMVVGQNVFETAADGNRCAVLRSGIARIGSIRHKKDGTTIVA 195 Query: 160 EITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAA----------------QDVSAF 203 + P+++ E + G V +++ + ++ ++ + AF Sbjct: 196 NVNPIFVDGE-----IAGVVSVIKDITEIQTLMERLSQVSAKAEYLEQELLRTKKTAQAF 250 Query: 204 SQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNC 263 + + S K+ V+ A K A SA +LI G++GTGK++ A H AS R P++ +NC Sbjct: 251 ANYIGKSGKVVDVLALASKAADSSANVLIRGESGTGKEVIAEGIHYASGRRRGPFIRVNC 310 Query: 264 ASIPEDAVESELFGHAPE-------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLN 316 +IP +ESELFGH K G FE AN G++ LDEIGE+ +Q KLLR L Sbjct: 311 GAIPGALLESELFGHEKGAFTGAVRRKLGKFELANHGTIFLDEIGELDKNLQVKLLRVLQ 370 Query: 317 DGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQD 376 F RVG + +HVDVR+I AT ++L +V++G FR+DLYYRLNV+ + LPPLRD P D Sbjct: 371 QKEFDRVGGEETIHVDVRIIAATNRDLEAMVREGTFRDDLYYRLNVIPIILPPLRDRPDD 430 Query: 377 IMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELR 436 I L E F+ + + E + D + Y WPGNVR+L+N I R +T +D + Sbjct: 431 IPLLVEHFIEKISKENKKDVRGITPDAMQMFMHYRWPGNVRELENVIERVITLMDTDLIT 490 Query: 437 PQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTA 496 + + + ++ +E+ ++ R S AK L +SH Sbjct: 491 AAMLPSYIKGDIAGREVQSLADDTVLP-WEEYEKQIIANALRQGTSFNGAAKLLRISHKT 549 Query: 497 IANKLREYGL 506 +A K R+YGL Sbjct: 550 VAAKARKYGL 559 >UniRef50_Q3ACP6 Sigma-54 dependent transcriptional regulator n=4 Tax=Thermoanaerobacteraceae RepID=Q3ACP6_CARHZ Length = 630 Score = 559 bits (1443), Expect = e-158, Method: Composition-based stats. Identities = 140/498 (28%), Positives = 250/498 (50%), Gaps = 36/498 (7%) Query: 27 DLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREH-LALSAL 85 D G + E+ ++ ++E R+A + SE+E + + Sbjct: 150 DTIGACCAAQLGLKSRLIISGKEAVANALSEAFRLA--------EAIKSEKEKTEQIKTI 201 Query: 86 LEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDS 145 ++ + + +++VD ++ + N + ++F + + +I +++ + Sbjct: 202 VDFVHDGIIAVDKDGRISIYNKMAEKIFKKLPSEVIGKKVETVIPNTRLYEVIKTGKPEI 261 Query: 146 HNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQ------- 198 I+G P+ + +E + GAV + + Q + + Sbjct: 262 GKIQ-EISGTMIATNRVPIVVGNE-----VVGAVATFQDVAEIQNMEQKIRRRLADKGLI 315 Query: 199 DVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPY 258 F I+ +S KMK VV QA+K A+L + +LI G+TGTGK+LFA + H AS R P+ Sbjct: 316 ASFKFDDIIFISDKMKDVVNQAKKYALLDSTVLILGETGTGKELFAQSIHNASERKNGPF 375 Query: 259 LALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAK 310 +A+NCA++PE+ +ESELFG+A GK G FE A+ G++ LDEIGEM +Q+K Sbjct: 376 VAINCAALPENLLESELFGYAEGAFTGARKGGKAGLFELAHKGTIFLDEIGEMPMGLQSK 435 Query: 311 LLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPL 370 LLR + + R+G+D + VDVR+ICAT +NL+E++ +G F+ DL+YR+++L +++P L Sbjct: 436 LLRVIQEKKVMRIGDDRLIPVDVRIICATNRNLIEMINEGKFKRDLFYRISILQIHIPSL 495 Query: 371 RDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQL 430 R+ +DI L F+ +++ + + +L ++ +PGNVR+L++ I RA Sbjct: 496 RERKEDIEVLVPYFIKKYSLICKKHIQGITSRGMELLKKWDYPGNVRELESIIERACAIC 555 Query: 431 DGYELRPQDILL---PDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLA 487 +G + +DI L D V+ LDEI + + V+ + + A Sbjct: 556 EGNIIDVRDIKLYNDQDSMENKVSSQSFLEIKPLDEIEKEYIKKVIKF---TDGNLSEAA 612 Query: 488 KRLGVSHTAIANKLREYG 505 K+LG+S T + KL+ + Sbjct: 613 KKLGISRTTLWRKLKNFN 630 >UniRef50_C4XRZ0 Fis family transcriptional regulator n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XRZ0_DESMR Length = 523 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 164/526 (31%), Positives = 266/526 (50%), Gaps = 25/526 (4%) Query: 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFS----SLMAE 57 +L + DR+G+ ++ LL RG ++ +E+ F E++ E LM+ Sbjct: 3 KLHLKFTDRVGVVADISALLASRGHNILSMEVAQEHGCAHVFLEIDHERGDCPRKDLMSM 62 Query: 58 IRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKL 117 + G+ + + MP E++ L +L+ + E V+++D V + N + + F Sbjct: 63 LAACPGLLRISCIEAMPHEKQANLLRTVLDNVDESVVAIDASGCVTLINNVARENFKCGR 122 Query: 118 DRLRNHTAAQL-INGFNFLRWLESEPQDSHNEHVVINGQ--NFLMEITPVYLQDENDQHV 174 +L + L LE ++ ++V + + + P+ + Sbjct: 123 ADPVGRHVRELPLPDHAILGCLEGRRYNNVRKNVTVGRKRLQYFATGRPILDAEGG---- 178 Query: 175 LTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITG 234 +TGAV + + + +++ FS I+ S M+ VV A+K+A A + I G Sbjct: 179 VTGAVEIAKDAQEIRDLAKSIYEPADVGFSDIIGASAAMRQVVAMAEKIASSEAIVTIRG 238 Query: 235 DTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGF 286 ++GTGKD+ A A H AS G+ ++A+NCA++PE +ESELFG+ EGK G Sbjct: 239 ESGTGKDMLAQAMHAASGLPGQ-FVAINCAAVPETLMESELFGYVGGAFSGARREGKPGL 297 Query: 287 FEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVEL 346 FE A G+V DEI EM QAK+LR + +G RR+G+ E + R+I AT +NL + Sbjct: 298 FELAKDGTVFFDEIAEMPLAAQAKILRLIQNGRLRRLGDSRETQANARIITATNRNLEQF 357 Query: 347 VQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTV 406 V+KG+FREDLYYR+NVL L++PPLR+ P+DI L + F+ + + G Sbjct: 358 VEKGLFREDLYYRINVLPLHIPPLRERPEDICALADHFLFQLSARLGKELTGFDPAARDK 417 Query: 407 LTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILL-----PDYDAATVAVGEDAMEGSL 461 L R+ WPGNVR+LKN + RA D + + +LL D A AV + SL Sbjct: 418 LVRHGWPGNVRELKNVVERAAILCDQPVIGERHVLLVHELGRDPLAGGGAVSDVGGRLSL 477 Query: 462 DEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 R+ER +L + S R+ A+ LG+SHTA+ K++++ L+ Sbjct: 478 RAAMERYERDLLESALKGRKSLRQAARELGLSHTALLQKVKKHRLA 523 >UniRef50_UPI0001C424D6 transcriptional regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C424D6 Length = 567 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 140/503 (27%), Positives = 229/503 (45%), Gaps = 36/503 (7%) Query: 33 IDPIGRIYLNF------AELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALL 86 I I+++F E + + + + + V + + SE+ L L ++ Sbjct: 72 IAEGTNIHIDFRGHTFVLRKEHTTINDQLYYVYLFSSVKGLEEILSASSEKTEL-LETVM 130 Query: 87 EALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSH 146 E + V+ VD + M + + +++ + A +I ++ + Sbjct: 131 EFAFDGVVMVDKDGYITMLSKEYAEFLNVRVEDVIGKHATDVIENTRMHIVAKTGKPEVA 190 Query: 147 NEHVVINGQNFLMEITPVYLQDENDQHV-------------LTGAVVMLRSTIRMGRQLQ 193 + I G + P+ E V L V ++ + ++ + Sbjct: 191 D-LQRIKGDYMIATRVPIIKNGEITGAVGRVLFQNVGGFNSLYKRVKLMETELKKYKGEF 249 Query: 194 NVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPR 253 + F IV S + QA++ A + +L+ G++GTGK+LFA+A H A R Sbjct: 250 REQNKATYTFHHIVGDSDSIIKAKHQAERAANSDSNVLLLGESGTGKELFAHAIHNAGSR 309 Query: 254 AGKPYLALNCASIPEDAVESELFGHAPEGKKG--------FFEQANGGSVLLDEIGEMSP 305 A ++ +NCA+IP D +ESELFG+ G FE A+GG++ LDEIGE+ Sbjct: 310 APGSFVKVNCAAIPPDLLESELFGYEEGSFTGAKKGGKKGKFEAADGGTIFLDEIGELPL 369 Query: 306 RMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTL 365 MQ K LR L + RVG +DVRVI AT +NL E+V KG FR DL+YRLNV+ + Sbjct: 370 HMQVKFLRVLQEKEVERVGSTTSKPIDVRVIAATNRNLEEMVDKGEFRLDLFYRLNVVAI 429 Query: 366 NLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYR 425 ++PPLRD +D+ L F+ + ++ D +L +Y WPGN+R+L+N I R Sbjct: 430 HIPPLRDREKDLGQLCLHFIEKLNPIMKKKVDGISKDAQRLLHQYKWPGNIRELENVIER 489 Query: 426 ALTQLD-GYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVL-TQLYRNYPST 483 AL LD G ++ + + D + E SL + E++ L L + + Sbjct: 490 ALNMLDNGTVIKSEHLPAKLTDTPSNHSVE-----SLAVSIEKAEKTALMNALKQTKGNR 544 Query: 484 RKLAKRLGVSHTAIANKLREYGL 506 K A LG+S + KL +Y L Sbjct: 545 SKAASLLGISRSTFYEKLTKYQL 567 Score = 54.2 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 22/134 (16%), Positives = 47/134 (35%), Gaps = 6/134 (4%) Query: 76 EREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFL 135 ER + + A++ +LP + D+ + N ++F + DR+ ++ Sbjct: 11 ERSYEQMEAIIRSLPFGTILTDLDQTILFHNETVQKIFKRPADRINGEVLTTYVD----- 65 Query: 136 RWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNV 195 L + N H+ G F++ + D+ L +V L + + + Sbjct: 66 PNLLDGIAEGTNIHIDFRGHTFVLRKEHTTINDQLYYVYLFSSVKGLEEILSASSEKTEL 125 Query: 196 AAQD-VSAFSQIVA 208 AF +V Sbjct: 126 LETVMEFAFDGVVM 139 >UniRef50_A1HPH1 Putative PAS/PAC sensor protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HPH1_9FIRM Length = 478 Score = 557 bits (1437), Expect = e-157, Method: Composition-based stats. Identities = 144/461 (31%), Positives = 226/461 (49%), Gaps = 38/461 (8%) Query: 80 LALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLI-----NGFNF 134 L A++++ + + D K+ V N A ++ G K + L+ + Sbjct: 25 TELEAIIDSSYDGIFITDGKANVLRLNAAYERITGIKAAEVVGRNMVDLVREGLYDQSVT 84 Query: 135 LRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQN 194 L LE + + ++ V N ++ L+ PV+ + + + V +R + R Sbjct: 85 LLVLEQRARVTIDQIVKRNNKHILVTGNPVFDK----RGGIFRVVTNVRDVTDLNRLQNQ 140 Query: 195 VAAQDVSAF----------------SQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGT 238 + I+ S + VVE A K+A + + +LITG++GT Sbjct: 141 LTKTQEETLKYQTELNHLRALHIKDPDIIFRSRAIAAVVELATKVADVDSTVLITGESGT 200 Query: 239 GKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH--------APEGKKGFFEQA 290 GK+LFA H+ +P++ +NC +IPE +ESELFG+ EGK G FE A Sbjct: 201 GKELFAKLIHRHGRGDNRPFIKINCGAIPETLLESELFGYDGGAFTGAKREGKPGLFELA 260 Query: 291 NGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKG 350 +GG++ LDEIGEM P +Q KLLR + + RVG + V+VR+I AT ++L +VQ+G Sbjct: 261 DGGTLFLDEIGEMPPVLQVKLLRVIQEKAVIRVGGVKQKSVNVRIIAATNRDLAHMVQQG 320 Query: 351 MFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRY 410 FREDLYYRL V+ L++PPLR+ +DI L + F+ +F + G + D+ LT Y Sbjct: 321 TFREDLYYRLMVVPLHIPPLRERKEDIPLLVKHFLDKFNKKFGFN-KVILPDVIDRLTEY 379 Query: 411 AWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFER 470 +WPGNVRQL+N I R + G E+ + + L E + E+ Sbjct: 380 SWPGNVRQLENIIERLVVTTPGNEITADMLP----QQVNARIPLPKTGTKLKEAVAATEK 435 Query: 471 SVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKKN 511 +LT+ +R Y + K+A LG+ T K +YGL KK Sbjct: 436 YLLTETFRQYGNWNKVADVLGIDRTTACRKAVKYGLISKKQ 476 >UniRef50_C0Z5U4 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z5U4_BREBN Length = 548 Score = 554 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 128/484 (26%), Positives = 222/484 (45%), Gaps = 52/484 (10%) Query: 76 EREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLI--NGFN 133 + + L L++ + E V VD ++ V N A+ ++ ++ + + Sbjct: 68 QNQSALLRTLMDTMSEAVTIVDSRNVVQHWNRAAETIYEIDRAQVVGTSLDEHFASESIR 127 Query: 134 FLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQ 193 L L H+ + L+ P+ + E + GA+ + + + R + Sbjct: 128 LLDALRQGTSVQRVYHIPRPDSHVLINAAPIRREGE-----IIGAISIEQDITELVRLNE 182 Query: 194 NVA----------------AQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTG 237 +A F I S ++ + A+K+A A +LI G++G Sbjct: 183 ELAHTTAHLHNLQQEMSRFQAADDPFYAIKGHSASIQSAIGSAKKVAQTDATVLIYGESG 242 Query: 238 TGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH--------APEGKKGFFEQ 289 GK+LFA A HQAS R KP++A+NC +IP ESELFG+ +GK G E Sbjct: 243 VGKELFAQAIHQASRRHEKPFIAINCGAIPAALFESELFGYQGGAFTGAEKKGKPGKLEL 302 Query: 290 ANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQK 349 A+GG++ LDEIGE+ +Q KLLR L + F RVG + V+ R++ AT + L ++V Sbjct: 303 AHGGTLFLDEIGELPLELQVKLLRALQERQFYRVGGTEPITVNTRIVAATNRQLEQMVAD 362 Query: 350 GMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTR 409 G FREDLYYRLNV +L +PPLR+ +D+ L ++F+ ++ P+++ ++ L Sbjct: 363 GRFREDLYYRLNVFSLEIPPLRERREDLPELVQIFIHEYSVAHDQSVPRISPEVMQALFE 422 Query: 410 YAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAV----------------- 452 Y WPGN+RQL+N I R + + P+ + Sbjct: 423 YTWPGNIRQLRNVIERLSILQENGVILPEHLPSVIRSHTEPTHVSLHTPMGGTYAPPTTT 482 Query: 453 ----GEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQ 508 ++ + + + +L L R Y + + A+ LGVS + NK++++ +++ Sbjct: 483 PPPIIRPSIAIAYPSSPANEKERILAALERTYGNKKAAAELLGVSRGTLYNKMKKFNINE 542 Query: 509 KKNE 512 + + Sbjct: 543 ESFK 546 >UniRef50_B2A1V9 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A1V9_NATTJ Length = 585 Score = 552 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 129/483 (26%), Positives = 219/483 (45%), Gaps = 34/483 (7%) Query: 59 RRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLD 118 I+ ++ + A+ +LE + ++ +D + N A Q G Sbjct: 103 EDISDSVKLKR-ELSNARSSANAMENVLEKAYDGIVMIDHNGIITKFNSAYQQFTGISEQ 161 Query: 119 RLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDE--------- 169 ++I + LE+ + E I G + P+Y + E Sbjct: 162 EALGKHVTEVIENTRMHKVLETGKPEI-GEIQKIKGCEMVATRVPIYEEGEIVGVLGKVL 220 Query: 170 ----NDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAM 225 + L + + + + F IV S K+ E A+ + Sbjct: 221 FRDIKEVKALAERLDAATNELDYYKGEVRKLKGSKYNFENIVGSSKKIIEAKEMAKIASQ 280 Query: 226 LSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE---- 281 + +LI G++GTGK+LFA+A H S R ++ +NCA+IPE+ +E+ELFG+ Sbjct: 281 SDSTVLIRGESGTGKELFAHAIHDGSLRRYGAFIRVNCAAIPENLLEAELFGYEKGAFTG 340 Query: 282 ----GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVIC 337 GK G FE ANGG++ LDEIG+M MQ KLLR L + +R+G + + +DVR+I Sbjct: 341 ANKEGKPGKFELANGGTIFLDEIGDMPFDMQVKLLRALQEREVQRIGSERVIDLDVRIIA 400 Query: 338 ATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRP 397 +T +NL +L+ + FREDLYYRLNV +N+PPLR+ D+ L + DE G+ Sbjct: 401 STNRNLEQLIAQDKFREDLYYRLNVFNINVPPLREMKDDLEKLINFIIKDLNDEMGLNVN 460 Query: 398 KLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDIL----------LPDYDA 447 ++++ N +L Y WPGN+R+LKN + R++ G + I ++ Sbjct: 461 GVSSEANKILNSYHWPGNIRELKNVLERSMNVAKGNIITKDCIPQYLLTWAGAEEQQNNS 520 Query: 448 ATVAVGEDAMEGSLDEITSRFERSVLT-QLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 + + + L + E+ + L + + +K A+ L + + + KL EY + Sbjct: 521 NSKSHEINLHNLELRSVVKEAEKLAIETALKQTNNNKKKAAELLNIHRSGLYKKLEEYNI 580 Query: 507 SQK 509 S + Sbjct: 581 SDQ 583 Score = 51.5 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 20/144 (13%), Positives = 50/144 (34%), Gaps = 16/144 (11%) Query: 81 ALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAA--QLINGFNFLRWL 138 +L+ A+ + ++ D +K++ N + + F + I Sbjct: 1 MFDSLMNAINDALIVTDEHNKIECFNYKAEETFNISHNH-LGEKIEGIIFIPDDLKKSDT 59 Query: 139 ESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTG--AVVMLRSTIRMGRQLQNVA 196 +E + + G+ + TP+ +Q L + ++++ R+L N Sbjct: 60 ITEGKKESQRRINYYGKTLSVIKTPIIEPTIENQCHLGNYYIFEDISDSVKLKRELSNAR 119 Query: 197 AQDVSAFSQIVAVSPKMKHVVEQA 220 + M++V+E+A Sbjct: 120 SSAN-----------AMENVLEKA 132 >UniRef50_C2W7W3 Transcriptional regulator n=4 Tax=Bacillus RepID=C2W7W3_BACCE Length = 617 Score = 551 bits (1420), Expect = e-155, Method: Composition-based stats. Identities = 135/525 (25%), Positives = 223/525 (42%), Gaps = 30/525 (5%) Query: 8 EDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDV 67 D ++D +G L +E+ Y+ + ++ + + Sbjct: 97 SDESTFVHMIIDKSFHKGSSLNAMEVIQHVPFYV--INEKNGVLEGIIGQ-NELFAFQKY 153 Query: 68 RTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQ 127 + L + E + VD + M N + G + A Sbjct: 154 MKQQLEEARHVIEWLRLSFDTAYEGIAIVDENGVIQMFNDTYSRFVGVTKEEAIGQRAEN 213 Query: 128 LINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHV----------LTG 177 +I L++ + + H + GQN ++ P++ Q V + Sbjct: 214 VIENTRLPVVLKTGVPERNQVH-RLQGQNLVVHRMPIWKQGRVIGAVGMLIHEGISDIYK 272 Query: 178 AVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTG 237 + + L + + F I+ S + + A+K A A +LITG++G Sbjct: 273 ILERFDQKDGAVKPLFSKPKKKQIHFEDILGESQPISETKKMARKAARSKASVLITGESG 332 Query: 238 TGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGFFEQ 289 GK+ FA A H A P++++NCA+IP++ +ESELFG+A GK G FE Sbjct: 333 VGKEQFARAIHGAGVTNNGPFISVNCAAIPDNLLESELFGYAEGAFTGAKKNGKAGKFEL 392 Query: 290 ANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQK 349 AN G++ LDEIG+MS Q K+LR L + R+G H + VD R+I AT K+L ++V++ Sbjct: 393 ANHGTLFLDEIGDMSLLTQVKILRVLQEREIERIGGTHPIPVDFRLIAATNKDLKQMVRE 452 Query: 350 GMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTR 409 G FREDLY+RL+V+ + +PPLR QDI + E + + L ++ ++ Sbjct: 453 GTFREDLYHRLHVIPIQIPPLRFRKQDIPLIVEEHLQKLCQMYNAEEKTLDKEVLRLMFH 512 Query: 410 YAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDE------ 463 Y WPGNVR+L N + R D +R +D+ Y M SL Sbjct: 513 YNWPGNVRELINVLERLFALSDDVHIRAKDLPEEFYYRDMEQKKLVPMIQSLPAKQEAMK 572 Query: 464 -ITSRFERSVLTQ-LYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 + ER ++ + L + K A LG+S + NKL + + Sbjct: 573 VVRDEEERGLIERVLKEAKGNKSKAAALLGISRATLYNKLSRFKI 617 >UniRef50_A4J593 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J593_DESRM Length = 582 Score = 550 bits (1418), Expect = e-155, Method: Composition-based stats. Identities = 134/454 (29%), Positives = 228/454 (50%), Gaps = 31/454 (6%) Query: 82 LSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESE 141 +L+ + E + +D +V + NP + +L+ K +++ + + + + Sbjct: 133 FETVLDQVNESICGIDKLHRVMIWNPKAEELYNVKAEKILSGRIEDFFSNLRISNCMHEK 192 Query: 142 PQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVS 201 + H G + L+ PV+ + + G + + + + + Q + Sbjct: 193 KEVRGLYHQPCEGAHVLINSAPVFDSGK-----VIGGLAVEKDITEIVQLNQELNKASTQ 247 Query: 202 ----------------AFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAY 245 AF++++ S ++ ++ +K+++ A +L+ G++GTGK+L A Sbjct: 248 VKLLEQEIRKISGQDCAFNKLIGRSEAIQKLIVFGKKISVTEATVLLRGESGTGKELLAR 307 Query: 246 ACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLL 297 A HQ SPR P++ +NC +IP + ESELFG+ +GK G FE ANGG++ L Sbjct: 308 AIHQNSPRHMNPFIVVNCGAIPNNLFESELFGYEGGAFTGADRKGKPGMFELANGGTLFL 367 Query: 298 DEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLY 357 DE+GEM MQAKLLR L +GTF RVG VHV+VRV+ AT +NL +++ + FREDLY Sbjct: 368 DEVGEMPIEMQAKLLRVLQEGTFYRVGGSQSVHVNVRVLAATHRNLEDMINRRQFREDLY 427 Query: 358 YRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVR 417 YRLNV+ L +PPLRD +DI L LF+ F + K+ + T Y WPGNVR Sbjct: 428 YRLNVVALEIPPLRDRREDIPELVHLFMQEFCQKYDKNIKKIEPAVMTAFLDYTWPGNVR 487 Query: 418 QLKNAIYRALTQLDGYELRPQDILLPDYDAATVAV-GEDAMEGSLDEITSRFERSVLTQL 476 +LKNA+ R + DG + + +++ +G L + E+ ++ + Sbjct: 488 ELKNAVERLVVLTDGDIIDEAALPENLRRNTYISLVTSPVSQGKLMNVAVEAEKQLILKT 547 Query: 477 YRN-YPSTRKLAKRLGVSHTAIANKLREYGLSQK 509 + + + A+ LG+ + + KLR+ G+ K Sbjct: 548 LQQVRGNRSEAARVLGIPRSTLYYKLRQLGIPAK 581 >UniRef50_C9RXL1 GAF modulated sigma54 specific transcriptional regulator, Fis family n=6 Tax=Geobacillus RepID=C9RXL1_GEOSY Length = 643 Score = 550 bits (1418), Expect = e-155, Method: Composition-based stats. Identities = 135/479 (28%), Positives = 239/479 (49%), Gaps = 27/479 (5%) Query: 43 FAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKV 102 + ++ + +++ ++ I + + L A + E +L +D K+ Sbjct: 175 YEKVHSHTLGMVVSAVKAIEYQLKLHE-NAEKNVMMQRFLEATTNNMKEGILIIDRDGKI 233 Query: 103 DMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQ------N 156 AN +LF +L L N + + P N+ + ++ + + Sbjct: 234 VKANNQLKKLFRIPQLQLEEKKLDDLFNDPSIC---SNHPLHLQNQELHLSVKPSNAVHH 290 Query: 157 FLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAA-QDVSAFSQIVAVSPKMKH 215 L++ P+Y + E G++++++ ++ + + +++ Q F+ ++ P Sbjct: 291 VLVDKIPIYEKKER-----IGSMIIVKEIEKVRQFVNHLSGNQAKITFADMIGQHPCFIE 345 Query: 216 VVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESEL 275 + +A+ A + +LI G++GTGK++ A A H S R KP++A+NC IP D + SEL Sbjct: 346 KMNEARLAAATDSNVLILGESGTGKEMVAQAIHNESKRRNKPFIAINCGGIPRDLLGSEL 405 Query: 276 FGHA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDH 327 FG+ G G FE ANGG++ LDEIGEMS MQ LLR + + R+G Sbjct: 406 FGYVDGAFTGAKKGGSAGKFELANGGTLFLDEIGEMSLEMQVLLLRVIQEKEVMRIGGHK 465 Query: 328 EVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVAR 387 + VDVR+I AT K+L VQKG FREDL++RLNV+ + LPPLR+ +DI L F+ R Sbjct: 466 VIPVDVRIIAATNKDLRREVQKGSFREDLFFRLNVMPIVLPPLRERKEDIPLLVRHFIER 525 Query: 388 FADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDA 447 A ++ P P++ +D L +Y WPGN+R+L+N I R L Q L D+ + Sbjct: 526 LAHKRDKPFPEIRSDFLEALMQYDWPGNIRELQNMIERVLNQCTKPVLTAADLPEEIFQP 585 Query: 448 ATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 + + + ++ S +EI + S++ L + + K A+ LG+S + ++ ++ + Sbjct: 586 SCSSQVRENVDISRNEIKKQ---SIIEALKQCNGNISKAARYLGISRSTFYRQMDKWNI 641 >UniRef50_B8DQH7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DQH7_DESVM Length = 604 Score = 550 bits (1418), Expect = e-155, Method: Composition-based stats. Identities = 168/605 (27%), Positives = 262/605 (43%), Gaps = 103/605 (17%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIG----------------------- 37 +R+E DR+G+ +L LL + + + +E++ Sbjct: 3 LRMECIFRDRVGIVSDLSSLLAGQALSIVSMEVERRPGGAAATLPTCAIADLTPGPASAP 62 Query: 38 -----------------------RIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMP 74 +YL ++L + RI + + R V +P Sbjct: 63 PPSPAPSPVPGPAHAPAFGMDRAFVYLEADSSRDVDRAALFETLGRIPDLLEFRIVDTLP 122 Query: 75 SEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQ----------------KLD 118 +E LL+ L + VLS+D + +V N + + +G Sbjct: 123 AEERANRFLVLLDNLRDGVLSIDAEGRVTSINKVAREAYGCTGAPGVSGTSGTPGGTPAA 182 Query: 119 RLRNHTAAQL-INGFNFLRWLESEPQDSHNEHVVINGQ---NFLMEITPVYLQDENDQHV 174 L L + L L V G F + P+ + + Sbjct: 183 DLSGLPLDALGLPDRGILDCLSGRELVDAKREVATPGGGRLQFFVTRRPIR----DGEGR 238 Query: 175 LTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITG 234 + GAV + R + + +++ F IV P + + A+++A + + I G Sbjct: 239 IIGAVEVARDMREIRKLARSITEPAQVTFGDIVGQHPAIGFAISFARRVAATDSIIAIRG 298 Query: 235 DTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGF 286 ++GTGK+LFA A H AS R P++ +NCA++PE +ESELFG+ GK G Sbjct: 299 ESGTGKELFARAIHTASGR-QGPFVPVNCAALPEQLLESELFGYEAGAFTGGRRDGKPGL 357 Query: 287 FEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVEL 346 FE A GG+VLLDEIG+M QAK+LR + +G+ RRVG EV VDVR+I AT + L L Sbjct: 358 FETARGGTVLLDEIGDMPLASQAKMLRVMQEGSVRRVGGTAEVPVDVRIITATNRTLERL 417 Query: 347 VQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTV 406 V++G FR+DLYYR+NVL +++PPL++ P DI L E F+ A G P L+ Sbjct: 418 VEEGRFRQDLYYRINVLPIHIPPLKERPGDIAVLAEHFLLGLAARLGGPVRSLSPGALAR 477 Query: 407 LTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAM--------- 457 L + WPGNVR+LKN + RA + + IL + + Sbjct: 478 LAGHHWPGNVRELKNVVERAAILCPDDVVGARFILFAHELEGGLFGESARLADGVADTVA 537 Query: 458 ---------------EGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLR 502 EG L ++ + FE+ ++ S RK A++LG+SHTA+ +KLR Sbjct: 538 DAAALASGHEHHGDGEGRLKDMIAVFEKRIIVDAVAAAGSVRKAARKLGISHTALLDKLR 597 Query: 503 EYGLS 507 +GL Sbjct: 598 RHGLR 602 >UniRef50_A5D421 Transcriptional regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D421_PELTS Length = 597 Score = 549 bits (1417), Expect = e-155, Method: Composition-based stats. Identities = 139/504 (27%), Positives = 236/504 (46%), Gaps = 31/504 (6%) Query: 26 IDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSERE---HLAL 82 I L ++ E ++ SL+ I R+A + + V L Sbjct: 106 ISLIAFDVAQK--------ETLCKNTDSLIEFIGRMADLISSKVVEQEIMAERTVLANRL 157 Query: 83 SALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEP 142 A+++A+ E V++VD + N ++ ++FG K +++ + L L+ Sbjct: 158 EAVVDAVGEGVMAVDRDGCITHFNRSAERIFGAKKEQVIGKDSKILFPSLPLSSVLQDGI 217 Query: 143 QDSHNEH-VVINGQNFLM--EITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNV-AAQ 198 + E + G+ + P+ +++ + G V + + + Sbjct: 218 GFNSKEVFINYEGRKLHLLSTAKPIKVKNG----QVAGVVASFQDFKETQKLAYEIMNTH 273 Query: 199 DVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPY 258 ++ F IV S + V +A+K++ ++ +LI G++GTGK++FA A H A P KP+ Sbjct: 274 EMIGFDDIVGASKPLLEVKAKAKKISASNSNVLIVGESGTGKEIFARAIHSAGPYGHKPF 333 Query: 259 LALNCASIPEDAVESELFGHAPE--------GKKGFFEQANGGSVLLDEIGEMSPRMQAK 310 +A+NC ++PE+ +E ELFG+ GK G FE ANGG++ LDE+G MS +Q K Sbjct: 334 VAINCGAMPENLLEIELFGYVEGAFSGARRGGKPGKFELANGGTIFLDEVGNMSLYLQTK 393 Query: 311 LLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPL 370 LLR L + RVG V V++R+I AT +L E VQK +FR+DLYY L+V+ L +PPL Sbjct: 394 LLRVLKERVIERVGGTRPVPVEIRIIAATNSDLQEKVQKNLFRDDLYYLLSVIPLVIPPL 453 Query: 371 RDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQL 430 R +DI L + ++ RF G + +Y WPGNVR+L A+ A+ Sbjct: 454 RTRQEDIPLLLDFYMKRFNRLLGKDIKGFTDEAMEACIKYPWPGNVRELVYAVEYAVNLE 513 Query: 431 DGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYP----STRKL 486 + + P+ + + A + G ++ E+ +T Y K Sbjct: 514 EEPLISPESLPPAIREGARKRTRDGIAGGGQLLQLAQLEKEAITAALEQYGWSDEGKTKA 573 Query: 487 AKRLGVSHTAIANKLREYGLSQKK 510 A+ LG+S I K++++ LS K Sbjct: 574 ARALGISRATIYRKIQKFKLSPPK 597 >UniRef50_B0TAR7 Sigma-54-dependent transcriptional activator (Nifa/ntrc family) n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TAR7_HELMI Length = 767 Score = 549 bits (1417), Expect = e-155, Method: Composition-based stats. Identities = 148/525 (28%), Positives = 234/525 (44%), Gaps = 76/525 (14%) Query: 53 SLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQL 112 ++ +I + V T + L +LE++ + + VD + V NPA ++ Sbjct: 234 AVFEDISALEKV----THELHEVKELKERLQLVLESVQDGICVVDREGCVTYVNPAYARI 289 Query: 113 FGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQ 172 + + L L + LE+ + + + P+ + E Sbjct: 290 VNGRREDLIGRDVRNLSPRGARRQALETGKPVLGHLAQKDGDVTVIADAYPIIVDGEVTG 349 Query: 173 HVLTGAVVMLRSTIRMGRQLQNVAAQDVS-------------AFSQIVAVSPKMKHVVEQ 219 + V L + +L +AA+ AF++ + S K++ + Sbjct: 350 --VVSIVKTLTDVQTLAEKLNRMAARAEYLEQELRRAKKPGGAFARFIGQSGKVRDALAM 407 Query: 220 AQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA 279 A+K A A +LI G++GTGK+L A H++ PR+ P++ +NCA+IPE +ESELFGH Sbjct: 408 AEKAAEGPATVLIRGESGTGKELVAEGIHESGPRSKGPFIRVNCAAIPETLLESELFGHE 467 Query: 280 PE-------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVD 332 K G FE A+ G++ LDEIGE+ MQAKLLR L + R+G + VD Sbjct: 468 KGAFTGAIKRKLGKFELAHKGTLFLDEIGELDKGMQAKLLRVLQEKEISRIGGEETFTVD 527 Query: 333 VRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQ 392 V++I AT ++L LV +G FREDLYYRLNV+ + LPPLR+ +DI L E F+ + EQ Sbjct: 528 VKIIAATNQDLERLVAEGRFREDLYYRLNVIPILLPPLRERKEDIPLLVEHFLQQTGREQ 587 Query: 393 GVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAV 452 G + +D L Y+WPGNVR+L N I R +T DG + D+ + A Sbjct: 588 GKALRGIHSDALEALMHYSWPGNVRELANLIERVVTLSDGPWITDSDLPTYLRER---AA 644 Query: 453 GEDAMEGSLDE-----------------------------------------------IT 465 E+ L+E Sbjct: 645 EENHEGRPLEERPAGGRYGAGERGYNGREHKIGRSVGGISGSLFRENRWEEQGDAPLLTW 704 Query: 466 SRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKK 510 +E+ ++T R + S AK LG++H +A K R+YG+ + + Sbjct: 705 EAYEQQIITLALRRHGSFNAAAKALGLTHKTVAAKARKYGIDKNE 749 Score = 75.4 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 41/113 (36%), Gaps = 6/113 (5%) Query: 85 LLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQD 144 + ++ + ++ D V + NPA+ ++ G + + A +I G E+ + Sbjct: 145 VFASMADGLIVTDAHDVVTVFNPAAERIMGMRASDVIGRKAKAVIAGSRMHIVAETGQPE 204 Query: 145 SHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAA 197 + I L TP+ + + + GAV + + + + Sbjct: 205 LGRRQM-IGDAVILTNRTPIVVDGQ-----VKGAVAVFEDISALEKVTHELHE 251 >UniRef50_C3AI49 Sigma54 specific transcriptional regulator, Fis n=5 Tax=Bacillus RepID=C3AI49_BACMY Length = 465 Score = 549 bits (1417), Expect = e-155, Method: Composition-based stats. Identities = 137/454 (30%), Positives = 225/454 (49%), Gaps = 22/454 (4%) Query: 81 ALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLI--NGFNFLRWL 138 L LL ++ E + V+ K + N A+ +++ K +++ + L+ L Sbjct: 11 TLHTLLSSVEEAISIVNTKGIMLYWNEAAEKMYDIKKEKIIGRNVQEFFLKEDIMNLKVL 70 Query: 139 ESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHV------LTGAVVMLRSTIRMGRQL 192 E++ H+ ++ L+ TP+Y ++ +T + + +L Sbjct: 71 ENQQPVRDIYHLPRPDKHVLISTTPIYNENNELIGSMSVEKDITATIKLNEKLTSTSEEL 130 Query: 193 QNVAAQ-----DVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYAC 247 Q + Q FS I + ++H++ +K+A A +LITG++G GK+LFA A Sbjct: 131 QQLKQQMIQNNRDDPFSNIKGNNLAIQHIIHDMKKVAKTDATILITGESGVGKELFAQAI 190 Query: 248 HQASPRAGKPYLALNCASIPEDAVESELFGH--------APEGKKGFFEQANGGSVLLDE 299 H+AS R+ K ++ +NC +IP ESELFG+ A GK G E A+GG++ LDE Sbjct: 191 HEASLRSKKAFIPINCGAIPNALFESELFGYESGAYTGAAKGGKPGKIELADGGTLFLDE 250 Query: 300 IGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYR 359 +GE+ MQ KLLR L + R+G +DVR+I AT + L ++V G FR DL+YR Sbjct: 251 VGELPLDMQVKLLRALQEKEIYRIGGQTPKKIDVRIIAATNRILEDMVLNGTFRSDLFYR 310 Query: 360 LNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQL 419 LNV T +PPLR+ DI L F F+ + P P + + L Y+WPGN+R+L Sbjct: 311 LNVFTACIPPLRERTDDISYLAHHFFKEFSFKYNKPTPFVHQEATKRLHAYSWPGNIREL 370 Query: 420 KNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFER-SVLTQLYR 478 +N I R + +G E+ DIL A + + SL + E+ +L L + Sbjct: 371 RNFIERLIVLHEGSEIYESDILKLLPQAKSFSEPVSQTTLSLTDERESLEKTRILQTLQQ 430 Query: 479 NYPSTRKLAKRLGVSHTAIANKLREYGLSQKKNE 512 Y + AK+LG+S + K+++Y ++ K + Sbjct: 431 TYGNKSITAKKLGMSRANLYKKIKKYRITFDKAD 464 >UniRef50_C0GH67 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GH67_9FIRM Length = 569 Score = 549 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 149/522 (28%), Positives = 247/522 (47%), Gaps = 30/522 (5%) Query: 8 EDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDV 67 +D++ +T L +L+ ID+ IE + +L+ + + + A + Sbjct: 51 KDKVFVTDSLEELVTKPEIDVI-IEATGSSEVQRKIHKLKHQGTAVMEALAGNLLMSILQ 109 Query: 68 RTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQ 127 + ++ L A+L ++ E + D + NPA ++ G + + Sbjct: 110 AKEELLEVKKLKSELWAILNSVQEAIEVADNSGLIKYTNPAFTRVTGIPEAQRVGKNIFE 169 Query: 128 LINGFNFLRWL-ESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTI 186 + L + +P + V +G + P+ ++ E + GAVV+ + Sbjct: 170 ASPHGALAQALVKQKPVVGYRSKVGGSGVEVISNAAPILVEGE-----VEGAVVVFQPIT 224 Query: 187 RMGRQLQNVAAQ----------------DVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPL 230 + + + + F + S ++ A+K A +P+ Sbjct: 225 DILKLMDELQKSTTIIENLYAKIDQITGSKYTFDDLTGSSKVFAATIDMAKKAAKSDSPV 284 Query: 231 LITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPEG-------K 283 L+TG++GTGK+L+A+A HQAS R GKP++ + CAS+PE+ +ESELFGH K Sbjct: 285 LLTGESGTGKELYAHAIHQASQRRGKPFIKIGCASVPEELLESELFGHEKGAFTGAVKTK 344 Query: 284 KGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNL 343 G E ANGG++ LDEIGEM+P +Q KL+R L D F RVG + DVRVI AT +L Sbjct: 345 LGKVELANGGTLFLDEIGEMNPYLQGKLMRLLQDQEFERVGGSETIRSDVRVITATNIDL 404 Query: 344 VELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADL 403 LV+KG FRE+LY+ LNV+ LNLPPLR +DI L E F+ + + G +A D Sbjct: 405 KSLVRKGRFREELYFLLNVIELNLPPLRQRREDIPVLVEHFIGKLNRKLGKKVRGVAPDA 464 Query: 404 NTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDE 463 +L+ Y WPGN+R+L+N I RA+ ++ + Q + LD+ Sbjct: 465 LQLLSGYDWPGNIRELENVIERAMVSVETEVIGRQHFSPYIGQFTNAETTQCTEIVPLDK 524 Query: 464 ITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYG 505 + ++ L + + +K A+ L +S + NKL++Y Sbjct: 525 MEQMMLKAALARYGESLEGKKKAAQALNISLATLYNKLKKYK 566 >UniRef50_Q0AVM6 Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains-like protein n=4 Tax=Bacteria RepID=Q0AVM6_SYNWW Length = 935 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 128/502 (25%), Positives = 225/502 (44%), Gaps = 32/502 (6%) Query: 33 IDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSE---REHLALSALLEAL 89 + G+ L + F+ ++M + + +T++ + + L A+ E+ Sbjct: 438 VTRTGKEVLVTSTPIFDDQGNIMLVVTNVRDITELNELEREFKKMVGLRERELDAVFESS 497 Query: 90 PEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLR----WLESEPQDS 145 + + D ++ N A ++ G K + +L+ + R + Sbjct: 498 YDGLYITDGEANTLRLNEAFERILGVKAEECIGRNMRELVAEGVYSRSGTLLALEKQDQV 557 Query: 146 HNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSA--- 202 G+ L+ TP+ + N + V +R + + + + + Sbjct: 558 TITLQAKTGKTALVTSTPIRDEHGN----IILVVTNVRDISELNELQEKLGHAEELSRFF 613 Query: 203 ---FSQI------VAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPR 253 ++ V S KM+ ++ ++A + + +LI G++G GK+L A H S R Sbjct: 614 QSELQEMKLRTQCVIHSSKMRELISMVVRIAAVDSTVLIQGESGVGKELVANTIHSNSNR 673 Query: 254 AGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGEMSP 305 +P + +NC +IPE+ +ESELFG+ +GK G FE A+ G + LDEIG++ Sbjct: 674 REQPMIKINCGAIPENLLESELFGYEPGAFTGASKQGKVGMFEVADQGILFLDEIGDLPL 733 Query: 306 RMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTL 365 +Q KLLR L D RVG + VDVR+I T NL E+V+K +FR+DL+YRLNV+ + Sbjct: 734 SLQVKLLRVLQDKEILRVGGTKPIKVDVRIIAGTNYNLKEMVEKKLFRKDLFYRLNVIPI 793 Query: 366 NLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYR 425 +PPLR+ +DI L F+ F + G+ KL+ + Y WPGNVR+L+N + R Sbjct: 794 TVPPLRERREDIPILANHFLDNFNQKHGMN-KKLSGSILAYFMEYDWPGNVRELENLVER 852 Query: 426 ALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRK 485 + + D+ + L + ER +L + ST + Sbjct: 853 LVVTSLNQTITAHDLSAWSELKPENKSDNEHGIVRLQDALENTERRILENAFSVCKSTYE 912 Query: 486 LAKRLGVSHTAIANKLREYGLS 507 +A+ LG+S + K +YG+ Sbjct: 913 VARALGISQPTVVRKAAKYGIR 934 Score = 94.6 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 21/146 (14%), Positives = 50/146 (34%), Gaps = 13/146 (8%) Query: 61 IAGVTDVRTVPWMPSEREH-----LALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQ 115 I V D+ + + +H L +L++ + + D ++ N A ++ G Sbjct: 340 ITNVRDITELNELERRLKHIGLRDRELDTILDSSFDGIFITDGEANTLRLNQAFERITGV 399 Query: 116 KLDRLRNHTAAQLINGFNFL----RWLESEPQDSHNEHVVINGQNFLMEITPVYLQDEND 171 +L++ F + + + + V G+ L+ TP++ +D Sbjct: 400 TAQECVGRNMKELVDEGYFSGSGTLLVLEKRERATITLVTRTGKEVLVTSTPIF----DD 455 Query: 172 QHVLTGAVVMLRSTIRMGRQLQNVAA 197 Q + V +R + + Sbjct: 456 QGNIMLVVTNVRDITELNELEREFKK 481 Score = 88.9 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 29/212 (13%), Positives = 77/212 (36%), Gaps = 21/212 (9%) Query: 15 RELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRRIAG----VTDVRTV 70 +++ D+ ++ + + + + + + + RIAG + D+ + Sbjct: 167 KKVTDIFTNSKLNEVLTTGQTQATRKIQYQDKILLTNRTPLYKNGRIAGAVAVLQDISEL 226 Query: 71 PWMPSE-----REHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTA 125 + E + L A+ E+ + + D + N ++ G ++ Sbjct: 227 EHIAEELARTRELNRQLDAIFESSFDGLYLTDGEGNTLRLNQGFVRITGISMEECVGSNM 286 Query: 126 AQLINGFNFLR----WLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVM 181 +L++ F + + + V G+ L+ TP++ + N ++T V Sbjct: 287 RELVDTGVFSDSGTLLALEKQERTTITLVARTGKEVLVTSTPIFDEQGNIAFIITN-VRD 345 Query: 182 LRSTIRMGRQLQNVAAQDV-------SAFSQI 206 + + R+L+++ +D S+F I Sbjct: 346 ITELNELERRLKHIGLRDRELDTILDSSFDGI 377 Score = 76.5 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 47/135 (34%), Gaps = 7/135 (5%) Query: 77 REHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLR 136 + A ++ PV+S+D + ++++ N A + G R + Sbjct: 121 KNASEWEACFNSIYNPVISIDGEGRINLLNRALEKSTGISASEARGKKVTDIFTNSKLNE 180 Query: 137 WLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVA 196 L + + + L TP+Y + GAV +L+ + + +A Sbjct: 181 VLTTGQTQ-ATRKIQYQDKILLTNRTPLYKNG-----RIAGAVAVLQDISELEHIAEELA 234 Query: 197 A-QDVSAFSQIVAVS 210 ++++ + S Sbjct: 235 RTRELNRQLDAIFES 249 >UniRef50_B2A661 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A661_NATTJ Length = 577 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 143/489 (29%), Positives = 249/489 (50%), Gaps = 34/489 (6%) Query: 52 SSLMAEIRRIAGVTDVRTV--PWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPAS 109 L+ + ++++ + ++ + L A++E+ + D + M N + Sbjct: 94 GELIGALGIFQDISELEHISQELAKTKAINDELRAIIESSYDGFWITDGEGYTIMINSSY 153 Query: 110 CQLFGQKLDRLRNHTAAQLING-----FNFLRWLESEPQDSHNEHVVINGQNFLMEITPV 164 ++ G K + + +L L+ LE + + + H + +G+ ++ PV Sbjct: 154 ERISGAKAEEVVGRHMKELEEEGFCSESVTLKVLEQKERVTLM-HELFSGKKVMVTGNPV 212 Query: 165 YLQDENDQHVLTGA------------VVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPK 212 + D N V+T + ++ R ++ + ++ +IVA S Sbjct: 213 FDSDGNITKVVTNVRDISELLELKDELEKTQALTRHYKE-KLTEMEEKLGEGEIVAKSKV 271 Query: 213 MKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVE 272 K ++ QA ++A + +LITG+TG GK++ A HQ S R+ +P++ +NC +IPE+ +E Sbjct: 272 KKRLLAQAARVAAFDSTVLITGETGVGKEIVAKYIHQNSNRSEQPFIKINCGAIPENLLE 331 Query: 273 SELFGHAPE--------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVG 324 SELFGH P GK G FE ANGG++LLDEIGE+S +Q KLLR L D R+G Sbjct: 332 SELFGHEPGSFTGASKNGKPGKFEIANGGTLLLDEIGELSKDLQVKLLRALQDQEITRIG 391 Query: 325 EDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELF 384 +DV++I T ++L E+V +G FREDLYYRL+V+ L +PPLR+ P DI L + Sbjct: 392 GVKPRQLDVKIIACTNRDLEEMVSQGEFREDLYYRLSVVPLYIPPLRERPDDIPFLIRHY 451 Query: 385 VARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPD 444 + ++ ++ GV L++ L Y WPGNVR+L+N I R + + + D+ Sbjct: 452 IRKYNEKYGVN-KGLSSSALEELVSYNWPGNVRELENMIERLVIMVPENLIETSDLP--- 507 Query: 445 YDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREY 504 + + SL + S+ E+ +L + +TR+ A+ LGV+ + + KL +Y Sbjct: 508 -QQIKESNVKILENLSLPDAVSKLEKRMLQKAMEQSNNTREAAQILGVAQSTVVRKLDKY 566 Query: 505 GLSQKKNEE 513 GL+ K +++ Sbjct: 567 GLNYKHDDQ 575 Score = 85.8 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 59/135 (43%), Gaps = 8/135 (5%) Query: 78 EHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRW 137 ++ L +L+++ +++++ + ++++ N ++ ++ G + + ++I + Sbjct: 5 QNSDLEIILDSVYNGIIAINKEGEINLFNKSASEILGMSKEEVLGCDIREIIPETGLFKV 64 Query: 138 LESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAA 197 LES + E V+N + L +P++ + E L GA+ + + + Q +A Sbjct: 65 LESSQTFT-TEKFVVNKKTLLTNRSPIFKEGE-----LIGALGIFQDISELEHISQELAK 118 Query: 198 QDV--SAFSQIVAVS 210 I+ S Sbjct: 119 TKAINDELRAIIESS 133 >UniRef50_C0GRG2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GRG2_9DELT Length = 464 Score = 548 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 135/461 (29%), Positives = 238/461 (51%), Gaps = 21/461 (4%) Query: 72 WMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQL--- 128 + ++R ++ ++E + E +L V + M N A + G + L + Sbjct: 1 MLKNQRVNIYCKDIVEIMQEGLLVVAEDGTIQMVNHALENITGYSKEELLGQPCSIFKCD 60 Query: 129 -------INGFNFLRWLESEPQDSHNEHVVINGQNFL--MEITPVYLQDENDQHVLTGAV 179 + + R E + Q H++ +++ ++ V D+ V Sbjct: 61 ACKLLRQASSGAWCRLFERKEQVKRKCHLMRKDGSYITVLKTAAVLSDDQGQTMGAVEIV 120 Query: 180 VMLRSTIRMGRQLQNVAAQ--DVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTG 237 + R+ RQL+ + + S+F IV S +MK++ E +K A P+ I G++G Sbjct: 121 TDISEMDRLDRQLRQLTRTLDEESSFQGIVGHSRQMKNLFELVEKAAQSDFPVFICGESG 180 Query: 238 TGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPEG-------KKGFFEQA 290 TGK+L A A H SPRA +PY+ +NCA++ E +ESELFGH +KG FE A Sbjct: 181 TGKELVAQAIHNLSPRAEQPYIQVNCAALNESLLESELFGHVKGAFTGALQHRKGRFEAA 240 Query: 291 NGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKG 350 + G + LDEIG++ MQ KLLR L TF RVG++ + VD+R I AT KNL +L+ +G Sbjct: 241 HKGDIFLDEIGDLPMAMQVKLLRVLETKTFERVGDNRTISVDLRFITATNKNLPDLIARG 300 Query: 351 MFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRY 410 FREDL+YR+NV+ ++LPPLR+ +D+ L + F+ R + + L+ + + +Y Sbjct: 301 GFREDLFYRINVIPIHLPPLRERKEDVPHLVDFFIKRLSRKNKKNIQGLSPEAMRIFMQY 360 Query: 411 AWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFER 470 +WPGNVR+LK+A+ + +G +R +++ D D + + R ++ Sbjct: 361 SWPGNVRELKSALEYSYVLAEGDRIRSENLPEYLKDGGNDFQAVDLPPAPAENLQQRQKQ 420 Query: 471 SVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKKN 511 ++ L ++ + + A+ LG++ + N++R+YG+ +++ Sbjct: 421 ELIEALKQSSGNKSQAARLLGINRVTVLNRMRKYGIDLQRD 461 >UniRef50_B8FWA2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FWA2_DESHD Length = 597 Score = 548 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 134/472 (28%), Positives = 229/472 (48%), Gaps = 31/472 (6%) Query: 65 TDVRTVPWMPSERE-----HLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDR 119 D+ + E E + +L + + ++ VD K K+ + N A + Sbjct: 127 QDLTDLEHTAKELETVKALNETFDTVLNIIRDGIVVVDEKGKITLVNQAMADFLTLPPEE 186 Query: 120 LRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHV----- 174 + A++++ + + +E + I G+ ++ +P+ + V Sbjct: 187 MIGKPIAEIMSSNQLHHVACTGLSQT-SEVLTIRGKPLIVSNSPIIKGGKVVGAVGKAVF 245 Query: 175 --------LTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAML 226 L V L + ++ +VA SP+MK + ++ +A Sbjct: 246 PHLAEAQELAEKVRCLEHKVTFFQEELQKNRTAQDIMKDMVAESPQMKKLKDEISIVATS 305 Query: 227 SAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH-------- 278 ++ +LITG++GTGK+ A+A H S R P++ +NCASIPE +ESE+FG+ Sbjct: 306 TSTVLITGESGTGKEGVAHAIHLGSDRGKGPFIKVNCASIPESLMESEMFGYVGGAFTGA 365 Query: 279 APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICA 338 A GK G E+A+GG++ LDEIGEM +QAKLLR L D R+G + V++R++ A Sbjct: 366 AKNGKPGRIERADGGTLFLDEIGEMPLALQAKLLRVLQDREIERLGSTETIKVNIRILAA 425 Query: 339 TQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPK 398 T K L + KG FR+DLYYRLNV+ L+LPPLR+ +DI PLT F+++F D Sbjct: 426 TNKKLSNAIAKGEFRQDLYYRLNVINLHLPPLRERLEDIEPLTHFFISKFNDILKANVSG 485 Query: 399 LAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAME 458 + + L +Y+WPGN+R+L+N + RA+ + + T A+G+ + Sbjct: 486 ITPNAMATLLQYSWPGNIRELENVVERAVNYTRSGLIELIHLPHQIISGNT-ALGQVMNK 544 Query: 459 GSLD--EITSRFERSVLTQLYRN-YPSTRKLAKRLGVSHTAIANKLREYGLS 507 ++ + + ER ++ + K AK L +S + + +KL +Y L+ Sbjct: 545 KTIRHQDRLGQIERDMIAAALEKAGGNKTKAAKLLNLSRSRLYDKLNKYDLN 596 >UniRef50_Q2RKJ6 Sigma54 specific transcriptional regulator with PAS sensor, Fis family n=2 Tax=Bacteria RepID=Q2RKJ6_MOOTA Length = 636 Score = 548 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 151/504 (29%), Positives = 245/504 (48%), Gaps = 36/504 (7%) Query: 18 LDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSER 77 L+++V + +R + E+ S + E R +A V Sbjct: 141 LEVIVGDAVSVRS---AKEMGLQAILVTSGKEAISQAIREAREVAMVRRRERARA----- 192 Query: 78 EHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRW 137 A+L+ E +++ D + ++ + NPA+ ++ G R+ A +++ G + Sbjct: 193 --EQFKAILDFAYEGIVATDQEGRITLVNPAAEKILGLAAHRVVGRPAREVLPGVPLNQV 250 Query: 138 LESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRM-------GR 190 L+S + H I PV GAV + + + Sbjct: 251 LQSGQKRLGELH-RAGNTLVAENIIPVIA-----GRETVGAVATFQDVSHLQAVEARARQ 304 Query: 191 QLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQA 250 +L F IV SP M ++E+A++ A A +LI G+TGTGK++ A + H A Sbjct: 305 ELYLKGHVARYTFEDIVTQSPVMAKIIERARQFAAAEATVLINGETGTGKEMVAQSIHNA 364 Query: 251 SPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGE 302 S R P++A+NCA++PE+ +ESELFG+ GKKG FE A+GG++ LDEIGE Sbjct: 365 SRRRNGPFVAVNCAAVPENLLESELFGYEEGAFTGARKGGKKGLFELAHGGTLFLDEIGE 424 Query: 303 MSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNV 362 +S +QA+LLR L RVG D + VDVR+I AT +NL + + + FR DLYYRLNV Sbjct: 425 LSLNLQARLLRVLQQKAIMRVGGDRVLPVDVRIIAATHRNLKDAIARDAFRRDLYYRLNV 484 Query: 363 LTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNA 422 L +NLPPLR+ P+D+ L + V + + G P + ++ + Y+WPGNVR+L+N Sbjct: 485 LQINLPPLRERPEDLPLLIKALVEKISRRAGRLPPIFSEEIIARMQAYSWPGNVRELENI 544 Query: 423 IYRALTQLDGYELRPQDI--LLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNY 480 + R + G E+ D+ +L + V + A+ G+L E+ R L Sbjct: 545 LERLVVLRSGEEVEAGDLDEILEPAENQPQPVLQLALRGTLAEMEGEIIRRTLAL---TG 601 Query: 481 PSTRKLAKRLGVSHTAIANKLREY 504 + + +RLG+S T + +L+ + Sbjct: 602 NNKEETCRRLGLSKTTLWRRLKSW 625 >UniRef50_A4IPF8 Transcriptional regulator n=6 Tax=Bacillales RepID=A4IPF8_GEOTN Length = 571 Score = 547 bits (1411), Expect = e-154, Method: Composition-based stats. Identities = 128/461 (27%), Positives = 216/461 (46%), Gaps = 33/461 (7%) Query: 77 REHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLR 136 R + +L+A E V+ VD V N A CQ G + + ++I Sbjct: 111 RLAETMKTVLDAAYEGVVVVDGNGMVREINRAYCQFLGIRREDAIGKHVTEVIENTRLHI 170 Query: 137 WLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHV-------LTGAVVMLRSTIRMG 189 ++S + I GQ ++ P++ + V ++ + + + Sbjct: 171 CVQSGIPE-RGYIQKIYGQPMVVHRIPIWRDGKVIGAVGMLIFQGVSEVYAIFQRLQELS 229 Query: 190 RQLQNVAAQDVS------------AFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTG 237 R+ + +I+ P + V + ++ A + + +LITG++G Sbjct: 230 REASRKEKNEAEASKQEAVASAAVGVERIIGRHPTIAAVKQMIRRAARVPSTVLITGESG 289 Query: 238 TGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPEG--------KKGFFEQ 289 TGK++ A A H+A A P++++NCA+IPE +E+ELFG+ K G F+ Sbjct: 290 TGKEVVARAIHEAGAHADGPFVSVNCAAIPEALLEAELFGYEDGAFTGAKKGGKPGKFQL 349 Query: 290 ANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQK 349 A+GG++ LDEIG+M MQAK+LR L + +VG E VDVR+I AT K L E+V+ Sbjct: 350 AHGGTLFLDEIGDMPLAMQAKILRVLEEKKVEKVGGLSETEVDVRIIAATNKPLEEMVRD 409 Query: 350 GMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTR 409 G FREDL+YRLN++ ++LPPLR+ DI L + R + GV A + VL Sbjct: 410 GTFREDLFYRLNIIRIHLPPLRERKTDIPALLAHHMERLCRQFGVVSKSFAKEAMEVLIN 469 Query: 410 YAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSL----DEIT 465 Y+WPGN+R+L N + ++ ++G + + + ++ EI Sbjct: 470 YSWPGNIRELVNVVEWLISMVEGENIEREHLPAYLSTIHPSVTPMPDGGANIADQWKEIV 529 Query: 466 SRFERSVLTQLY-RNYPSTRKLAKRLGVSHTAIANKLREYG 505 + ER + + + A+RLG+ + + KL++YG Sbjct: 530 YQSERERIAAALVAANGNKAEAARRLGIHRSTLYEKLKKYG 570 >UniRef50_P26047 Signal-transduction and transcriptional-control protein n=10 Tax=Clostridium RepID=STC_CLOBE Length = 632 Score = 547 bits (1410), Expect = e-154, Method: Composition-based stats. Identities = 129/472 (27%), Positives = 230/472 (48%), Gaps = 19/472 (4%) Query: 49 ESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPA 108 + ++A ++ I V+ + + L+ + +++ + +VD K + N + Sbjct: 169 HTLGLVVAAVKSIENHLKVKKTQ-NELVKTYQYLNKITDSVNLGIFAVDTKGIIKAINKS 227 Query: 109 SCQLFGQKLDRLRNHTAAQLINGFN-FLRWLESEPQDSHNEHVVINGQN-FLMEITPVYL 166 +C + + + N +++ + L+ L + E + + + F + + P+ Sbjct: 228 ACDMLHINEEDVINKNVDTVLDSWKHILQRLRNGQSYEDEEIMYSDKKKRFNINVYPIKD 287 Query: 167 QDENDQHVLTGAVVMLRSTIRMGRQLQN-VAAQDVSAFSQIVAVSPKMKHVVEQAQKLAM 225 ++ N +TG V + + + + + F I+ S MK + EQ + ++ Sbjct: 288 KNSN----ITGMVGIFKDIQNVYNLVNKYINRTAKYTFDDIIGQSEAMKRLKEQIKSISN 343 Query: 226 LSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE---- 281 + +LI G++GTGK+L A + H S R K ++A+NC +IP+ +ESELFG+ Sbjct: 344 SPSTVLIQGESGTGKELIAQSIHNNSNRRSKSFVAINCGAIPKSLIESELFGYEEGAFTG 403 Query: 282 ----GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVIC 337 G G FE AN G++ LDEIGEM MQ LLR L +G R+G + V VDVR+I Sbjct: 404 AKRGGCPGKFELANEGTLFLDEIGEMPLDMQVNLLRVLQEGCITRIGGNKCVDVDVRIIA 463 Query: 338 ATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRP 397 AT KNL + ++ G FREDLYYRL+V+ + +PPLR+ DI L E F+ AD+ G P Sbjct: 464 ATNKNLKKEIEDGNFREDLYYRLSVIPIYVPPLRERNGDIGILIEHFLKIKADKLGKLIP 523 Query: 398 KLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAM 457 ++ ++ L Y WPGNVR+L+N I + ++ + V + Sbjct: 524 EIRKNIYENLLSYGWPGNVRELENCIENIVNMNGNTSFNFENRTIKKDVNCYSDVSLEYD 583 Query: 458 EGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQK 509 SL+E+ R + + + K + LG++ + + K+++Y + + Sbjct: 584 MCSLEELEKRAISICI---NQCGGNISKACRILGINRSTLYIKIKKYNIKVR 632 >UniRef50_Q0SQI9 Phosphocarrier HPr/sensory box protein/sigma-54 dependent transcriptional regulator n=21 Tax=Clostridium RepID=Q0SQI9_CLOPS Length = 668 Score = 546 bits (1409), Expect = e-154, Method: Composition-based stats. Identities = 137/475 (28%), Positives = 225/475 (47%), Gaps = 26/475 (5%) Query: 56 AEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQ 115 I I+ + DV + M + + + +LE + + VD ++ NPA + F + Sbjct: 200 KIIGAISVIQDVSDIIGM--KEINEKFTKILENSQDMICFVDENGIINYLNPAYIKNFSK 257 Query: 116 KLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQ--- 172 + + + + + + H NG N + I P+++ + Sbjct: 258 VSSDVIGKSIFDIAPNGLRAKVFKEKTLLKDVIH-KKNGINVISTIDPLFIDGQFKGVIS 316 Query: 173 --------HVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLA 224 L + + + S+F+ I+ + +K ++ QK + Sbjct: 317 TSRPVSLIKELMSKLNKSEQELDYYKNEFLRQLSKNSSFNNIIGSTRTLKDIMYMCQKAS 376 Query: 225 MLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPEG-- 282 ++ +LI G++GTGK+L A A H S R KP++ +NCASIPE+ +ESELFG+ Sbjct: 377 ETTSTVLIRGESGTGKELIAKAIHNNSNRKNKPFVRVNCASIPENLLESELFGYEKGAFT 436 Query: 283 -----KKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVIC 337 K G F A+ G++ LDEIG+M MQ KLLR L + VG ++DVRVI Sbjct: 437 GAVQSKPGKFAIADTGTIFLDEIGDMPLSMQVKLLRVLQEREIESVGGITPKNIDVRVIA 496 Query: 338 ATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRP 397 AT +NL E+++ G FREDLYYRLNVL +NLPPLR+ +DI L E F+ + + Sbjct: 497 ATNRNLEEMIEDGSFREDLYYRLNVLGINLPPLRERKEDIPELAEHFITKLNKKLHKTIL 556 Query: 398 KLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAM 457 + D +L Y+WPGN+R+L+N + RA+ DG + + V + Sbjct: 557 GIKQDALNLLIEYSWPGNIRELENIMERAINLCDGDYIDSSYLPSYLK---PVESKSFNL 613 Query: 458 EGSLDEIT--SRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKK 510 +D I +E+ ++ + Y S K K LG++H ++ K ++Y + KK Sbjct: 614 NIDIDHILPFEEYEKQIIEAAMKKYKSFNKAGKALGLTHRTVSLKCKKYNIEVKK 668 Score = 73.1 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 25/202 (12%), Positives = 74/202 (36%), Gaps = 17/202 (8%) Query: 15 RELLDLLVLRGIDLRGIEIDPIGRIYLNFAE---LEFESFSSLMA----EIRRIAGVTDV 67 D L + + + +++ P I + +E + SL+ I D Sbjct: 42 ESYTDWLGISMLAILSLKVLPNESILIGSKNEGMIEKLAVQSLLEFIDKNINNPIESEDS 101 Query: 68 RTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQ 127 + + +LE+LP ++ +D+ + N + + G ++ + Sbjct: 102 EIDEIIDASIVAN--EQVLESLPIGIVVIDIDQNIITINQYALRFIGCNKKDVKGKKINE 159 Query: 128 LINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIR 187 +I + S + + + IN + L+ +P+++ D+ + GA+ +++ Sbjct: 160 VIPSSQLPHVMLSNLKKYGS-TLHINNRVGLVNSSPLFINDK-----IIGAISVIQDVSD 213 Query: 188 M--GRQLQNVAAQDVSAFSQIV 207 + +++ + + ++ Sbjct: 214 IIGMKEINEKFTKILENSQDMI 235 >UniRef50_A1HNH8 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Clostridiales RepID=A1HNH8_9FIRM Length = 637 Score = 546 bits (1409), Expect = e-154, Method: Composition-based stats. Identities = 145/498 (29%), Positives = 246/498 (49%), Gaps = 34/498 (6%) Query: 27 DLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALL 86 + +I + F E E+ + E +R+A V + +L Sbjct: 150 GVMSTQIAERLGLKTVFIETGREAIYHALREAKRVARVRRQE-------QERSEQFRTIL 202 Query: 87 EALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSH 146 + E +++VD +++ N A+ ++ G +L+ R L S + Sbjct: 203 DYSTEGIITVDAAGAINLVNAAAMKITGLSG-EAVGLAVDKLLPQLGLSRVLASGRAEL- 260 Query: 147 NEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQ-------D 199 E +NGQ + P+ ++ + GAV + + + + Sbjct: 261 GEVETVNGQQVAVNRVPIIIRGQA-----VGAVATFQPVADIQALEGKIRQKIYKRGLVA 315 Query: 200 VSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYL 259 F I+ SP ++ + A++ + +++ +LITG+TGTGK++FA + H AS R P++ Sbjct: 316 RLTFDDILGDSPAIRQTIAIAREFSKVNSNVLITGETGTGKEIFAQSIHNASSRRKGPFV 375 Query: 260 ALNCASIPEDAVESELFGHAPE--------GKKGFFEQANGGSVLLDEIGEMSPRMQAKL 311 A+NCA++PE+ +ESELFG+A GK G FE A+GG++ LDEI E+SP++Q +L Sbjct: 376 AVNCAALPENLLESELFGYAEGAFTGAARGGKMGLFELAHGGTIFLDEISEISPKLQGRL 435 Query: 312 LRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLR 371 LR L + R+G+D + VDVR+I AT ++L +++Q G+FR+DLYYR++VL L LPPLR Sbjct: 436 LRVLQEREIMRLGDDRVIPVDVRIIAATNRDLYQMMQAGLFRQDLYYRVDVLKLVLPPLR 495 Query: 372 DCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLD 431 + +DI+PL + F+ + P ++ D +L RY WPGNVR+L+N R Sbjct: 496 ERQEDIIPLMQHFLKLYCLRSNRPVKEIGPDAQAMLRRYHWPGNVRELRNIAERLAVLAS 555 Query: 432 GYELRPQDIL--LPDYDAATVAVGEDAMEGSLDEITSRFERS---VLTQLYRNYPSTRKL 486 G + +DI L A+ E A + + + + +L L + Sbjct: 556 GPVIGARDIAAVLTGETGRRKAINETAEPAAALAGANDVDLNRAILLKALEEADYHYGRA 615 Query: 487 AKRLGVSHTAIANKLREY 504 A RLG+S T + +L++Y Sbjct: 616 AARLGISRTTLWRRLKQY 633 >UniRef50_C8VXU8 Putative sigma54 specific transcriptional regulator n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VXU8_DESAS Length = 710 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 147/536 (27%), Positives = 252/536 (47%), Gaps = 54/536 (10%) Query: 15 RELLDLLVLRGIDLRGIEIDPIGRI----YLNFAELEFESFSSLMAEIRRIAG----VTD 66 + +LD+L + +++ G++ + + F S S + + +I G + D Sbjct: 168 KNILDVLSTSNL----MDVIETGKVETLKKVKLNDRYFISNRSPIKKDGKIIGAVAVLQD 223 Query: 67 VRTVPWMPSE-----REHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLR 121 + + M E + L A++E+ + + D K + N A L G Sbjct: 224 ISELDKMSKELCYVKELNEELDAIVESSFDGLFITDGKGIILRYNKAFELLTGIDAHEYL 283 Query: 122 NHTAAQLINGF----NFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTG 177 + + + E + G+ L PV + + Sbjct: 284 GLSVEDIRRDGIISEPVTCHVLEEKKSITIMQTSKTGKLTLTTGNPVIDANGE----IIR 339 Query: 178 AVVMLRSTIR-----------------MGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQA 220 V +R QL+ + + ++ +V S KM+++++ Sbjct: 340 VVCNVRDITELNLLKHKLKKAQGLSQHYENQLRTLKLRYDNS-ENLVVTSAKMRNLLDMV 398 Query: 221 QKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH-- 278 +LA + + +LITG++GTGK+L A H S R KP++ +NC +IPE+ +ESELFG+ Sbjct: 399 VRLASVDSTVLITGESGTGKELIAEIIHSNSSRRDKPFIKVNCGAIPENLLESELFGYDG 458 Query: 279 ------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVD 332 EGK G+ E A+GG++ LDEIGEM +Q K+LRFL + RVG + ++VD Sbjct: 459 GAFTGAKKEGKSGYIELASGGTLFLDEIGEMPLNLQVKMLRFLQNKEIIRVGGTNYINVD 518 Query: 333 VRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQ 392 VR++ AT +NL+E+VQ+ FREDLYYRLNV+ +++PPLRD DI PL F+ F + Sbjct: 519 VRIVTATNRNLLEMVQQKQFREDLYYRLNVVPVHIPPLRDRKDDIPPLAAHFIEVFNHKY 578 Query: 393 GVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDIL--LPDYDAATV 450 K++ + +L +Y WPGN+R+L+N I R + + +D+ L D + Sbjct: 579 KKN-KKISPGVVDILMQYDWPGNIRELENLIERMVVTTMDDIITSEDLPSYLRDKVGISS 637 Query: 451 AVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 + + L + E+ +L + Y Y +TR++AK L V + + K +Y + Sbjct: 638 SYIIVSGIVPLRDAVESVEKQLLERAYAKYRTTRQMAKELKVDASTVVRKAAKYCI 693 Score = 90.8 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 33/202 (16%), Positives = 81/202 (40%), Gaps = 19/202 (9%) Query: 22 VLRGIDLRG-IEIDPIGRIYLNFAELEFESFSS-------LMAEIRRIAGVT---DVRTV 70 + +GID+ +E I + + EF + ++ E R+ G+ D+ Sbjct: 56 ISKGIDMNTKVEALMTREILTGYPDDEFGDVVNATVPRLPVVDEKGRVVGIITRGDIAKA 115 Query: 71 PWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLIN 130 + L L ++ + ++SVD K + + N ++ +L G + + +++ Sbjct: 116 FFNSYRNISLELDTIMNSTHNAIVSVDEKGIIKVWNLSAARLLGIEAEAATGKNILDVLS 175 Query: 131 GFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGR 190 N + +E+ ++ + V +N + F+ +P+ + + GAV +L+ + + Sbjct: 176 TSNLMDVIETGKVET-LKKVKLNDRYFISNRSPIKKDGK-----IIGAVAVLQDISELDK 229 Query: 191 QLQNV--AAQDVSAFSQIVAVS 210 + + + IV S Sbjct: 230 MSKELCYVKELNEELDAIVESS 251 >UniRef50_B0K647 Sigma54 specific transcriptional regulator, Fis family n=12 Tax=Firmicutes RepID=B0K647_THEPX Length = 544 Score = 544 bits (1402), Expect = e-153, Method: Composition-based stats. Identities = 145/536 (27%), Positives = 245/536 (45%), Gaps = 38/536 (7%) Query: 3 LEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRI-------YLNFAELEFESFSSLM 55 + + + + +++ + + + +I+ I + F E ++ Sbjct: 12 VSIHSQIAAHIVQKVSHISRQNNVSIFLRKINDNRLIPANSMLSMVTFFASRGEEIEVVV 71 Query: 56 AEIRRIAGVTDVR-----TVPWMPSEREHLAL--------SALLEALPEPVLSVDMKSKV 102 + + + + E+ L + ++ ++ D + Sbjct: 72 EGANVDNAIKEFKGFFYNELGKEKEEKTTYELLKNTSIAYEKIFNSIGSGLIVTDENGAI 131 Query: 103 DMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEIT 162 + N A+ + G +D+ ++++ L++ ++ N+ + I L IT Sbjct: 132 MIFNKAAESITGINMDQAIGKKIQEVMSDIKIADVLKTGKEE-MNKKLKIGTNVVLTNIT 190 Query: 163 PVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDV--SAFSQIVAVSPKMKHVVEQA 220 P+Y + GAV++ ++ + AF I+ S K+K + A Sbjct: 191 PIY-----TGTKIEGAVIVFYDFPQIEYLENELKRDRKLDKAFDIIIGNSGKLKDALTIA 245 Query: 221 QKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAP 280 K A + +LI G++GTGK+L A A H AS R KP++ +NCA+IP +ESELFGH Sbjct: 246 SKAAETDSTVLIRGESGTGKELVANAIHYASKRKDKPFIRVNCAAIPVTLLESELFGHER 305 Query: 281 EG-------KKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDV 333 K G FE A+GG++ LDEIG++ P +Q KLLR + + F RVG + VDV Sbjct: 306 GAFTGAVTQKIGKFELADGGTIFLDEIGDIPPEIQVKLLRVIQEKEFERVGGIKTIKVDV 365 Query: 334 RVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQG 393 R+I AT K+L + +++G FREDLYYRLNV+ + LPPLR+ DI L E F+ + + Sbjct: 366 RIIAATNKDLEKAIKEGTFREDLYYRLNVIPVILPPLRERRGDIPLLVEHFIEKLNKKLN 425 Query: 394 VPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVG 453 K+ L Y WPGN+R+L+N I R +T D + +D+ + T Sbjct: 426 KNVKKVTKKAMQALIYYDWPGNIRELENIIERCITLSDTDYIDYEDLPQYIRNETTTVSD 485 Query: 454 EDA---MEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 +D E S +E ++ + Y S K K LG++H IA K R++GL Sbjct: 486 DDIIYLGENSELLTMEEYEYKIIKAAIQRYKSFNKAGKVLGLTHKTIAAKARKFGL 541 >UniRef50_A4J1E1 Transcriptional regulator n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J1E1_DESRM Length = 468 Score = 543 bits (1401), Expect = e-153, Method: Composition-based stats. Identities = 124/447 (27%), Positives = 212/447 (47%), Gaps = 26/447 (5%) Query: 85 LLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQD 144 L++ E + V+ V + + ++ + LE+ Sbjct: 21 LIDNPYEGFIVVNKDGFVTFISNLYLDTINLTREDTIGKHITEVHENTKLTQVLETGKPI 80 Query: 145 SHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAV--------------VMLRSTIRMGR 190 S++ G ++ P+ + + AV L + R Sbjct: 81 SYDYWETK-GMTLIVVRFPILNNAGDLIGAVGKAVFVDIPSGKTLANKLKQLEKEVEFYR 139 Query: 191 QLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQA 250 Q F+ ++ S +K V + AQK+A+ + +LITG++GTGK+LFA A H A Sbjct: 140 QELYKFYNAKYTFNDMIGESDAIKKVKKIAQKIALSESTVLITGESGTGKELFAQAIHNA 199 Query: 251 SPRAGKPYLALNCASIPEDAVESELFGHAPEG--------KKGFFEQANGGSVLLDEIGE 302 S R+ P++ +NCA++PE+ +E+ELFG+A K G FE A GG++ LDEIGE Sbjct: 200 SYRSRFPFVRINCAAVPENLLEAELFGYAEGAFTGAKKGGKPGKFELAQGGTIFLDEIGE 259 Query: 303 MSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNV 362 + MQ+KLL L + RVG V VD RVI AT +NL ++V++G FR+DLYYRLNV Sbjct: 260 LPLSMQSKLLNVLQEREIERVGGIRTVSVDFRVIAATNRNLEDMVKEGTFRDDLYYRLNV 319 Query: 363 LTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNA 422 ++L +P LR+ DI L F + ++ + + VL+++ WPGN+R+L+N Sbjct: 320 ISLKIPSLRERQDDIPLLVNYFTDKLNNKLKCSVERFTEEAMLVLSKHYWPGNIRELQNT 379 Query: 423 IYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPS 482 + R D + + + + +LDE+ + E+ ++ N Sbjct: 380 LERVFILSDDNIISVNHLPFSIKMRKGNII--QSKRLTLDEMIDQTEKRIILDTLSNVKD 437 Query: 483 TR-KLAKRLGVSHTAIANKLREYGLSQ 508 R A+ LG+ +++ K++++G+ + Sbjct: 438 DRIAAAELLGIHLSSLYRKMKKHGIKK 464 >UniRef50_C0GGJ4 Putative sigma54 specific transcriptional regulator n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GGJ4_9FIRM Length = 581 Score = 543 bits (1400), Expect = e-153, Method: Composition-based stats. Identities = 123/470 (26%), Positives = 226/470 (48%), Gaps = 36/470 (7%) Query: 65 TDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHT 124 + T + ++ L ++E+ + + D + N A ++ G K + + Sbjct: 109 LESMTHAFKEEKKVAEELQDIIESSYDGMWITDGQGYTLHVNSAYERISGMKKEEVLGKH 168 Query: 125 AAQLIN-----GFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAV 179 +L++ L LE + + + + G+ L+ P++ ++ + V Sbjct: 169 MQELVDKGYFSDSVTLHVLEKKERVTMMHEIRKTGKRALITGNPIFDENGE----IVRVV 224 Query: 180 VMLRSTIRMGRQLQNVAAQDVSA---------------FSQIVAVSPKMKHVVEQAQKLA 224 +R + Q++ + A + IV SP+M+H+ + A + Sbjct: 225 TNVRDITELLNLKQDLEDKAKQAARYQNELAQLRSKSIYDDIVVESPQMRHIFDLATWVG 284 Query: 225 MLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--- 281 + + +LI G++G GK++ ++S R +P++ +NC +IPE+ +ESELFG+ Sbjct: 285 QVDSTVLILGESGVGKEVVTQIVVRSSERRDEPFIKVNCGAIPENLLESELFGYEKGSFT 344 Query: 282 -----GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVI 336 GK G FE A+ G++LLDE+ E+ +Q KLLR + + RVG + +DVR+I Sbjct: 345 GADKKGKPGMFELAHKGTILLDEVAEIPLNLQVKLLRAIQEQEIIRVGGTKPLKLDVRII 404 Query: 337 CATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPR 396 AT ++L ELV+ G FREDL+YRLNV+ + +PPLR+ +DI L ELF+ ++ ++ + Sbjct: 405 AATNRDLDELVRTGQFREDLFYRLNVIPITVPPLRERREDIPALIELFLCKYNEKYRLN- 463 Query: 397 PKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVG--- 453 LA + L Y WPGNVR+L+N + R + E+ P + L Sbjct: 464 KTLAPETVERLVSYDWPGNVRELQNIVERMVVLSRDDEVGPDALPLQLKSVGKTDADFHV 523 Query: 454 EDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLRE 503 + + L + E+ ++ + + Y +TR+ A+ LGV + + K + Sbjct: 524 DVSGVVPLKDALFEVEKKLVVKALQKYGTTRRAAEALGVDQSTVVRKYQR 573 Score = 83.9 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 19/131 (14%), Positives = 51/131 (38%), Gaps = 7/131 (5%) Query: 82 LSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESE 141 L +L+++ +++ D ++ + N ++ ++ GQ D+L Q+ L + + Sbjct: 8 LQTVLDSVYNGIVACDTDGRIILINESAARVAGQPKDKLMGARVDQVFPNTGLLEIIRTG 67 Query: 142 PQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDV- 200 ++ ++ + G+ L +P+ D L GA+ + + + + Sbjct: 68 -ENRPHQRLNFQGRLLLSNRSPIRNADGE----LVGAIGVFQDNSELESMTHAFKEEKKV 122 Query: 201 -SAFSQIVAVS 210 I+ S Sbjct: 123 AEELQDIIESS 133 >UniRef50_Q1K388 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K388_DESAC Length = 648 Score = 543 bits (1399), Expect = e-153, Method: Composition-based stats. Identities = 134/468 (28%), Positives = 221/468 (47%), Gaps = 19/468 (4%) Query: 50 SFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPAS 109 + ++A I + V + +++++ E ++ VD ++ N Sbjct: 187 ALGMVVAGANAIENQLQLHRVNTKLYASYKYS-DTIIQSMSEGLVIVDPAGEITKINQVG 245 Query: 110 CQLFGQKLDRLRNHTAAQLI-NGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQD 168 ++ G +++ + L L + + E ++ GQ + D Sbjct: 246 ARILGVSAREAIGLHISKMFGDNAPVLDLLRTGIAYENKEVMLDGGQRAFYCSATLLRDD 305 Query: 169 ENDQHVLTGAVVMLRSTIRMGRQL-QNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLS 227 + GAV +LR R + +F +++ S MK A++ + Sbjct: 306 ---YGQMIGAVSVLRPRSSSKRSRCLPTTQRARYSFDEMIGDSDAMKKTRHMAERASRSL 362 Query: 228 APLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA-------- 279 + +LI G++GTGK+L A H AS R G+P++A+NCA+I E +ESELFG+ Sbjct: 363 STVLIQGESGTGKELIAQGIHNASSRHGQPFVAVNCAAITETLLESELFGYEEGSFTGAK 422 Query: 280 PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICAT 339 G+ G E ANGG++ LDEIG+M +MQ KLLR L + RVG E+ +DVR+I AT Sbjct: 423 KGGQPGKVEMANGGTLFLDEIGDMPLQMQVKLLRMLQERRICRVGSSEEISIDVRIIAAT 482 Query: 340 QKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKL 399 +NL + VQ+G FR+DLYYRLNVL + +PPLR+ D+ L + V + + G + Sbjct: 483 HQNLKQAVQEGCFRKDLYYRLNVLPITIPPLRERMDDLPALAKFLVTKLSGRFGKEPVAI 542 Query: 400 AADLNTVLTRYAWPGNVRQLKNAIYRALTQL-DGYELRPQDILLPDYDAATVAVGEDAME 458 ++ Y WPGN+R+L+N I RA+ + DG L + I L + D + Sbjct: 543 SSLFMRACQSYDWPGNIRELENVIERAMNMVDDGDALTAEMIDLDPVELPADHAIPDGVR 602 Query: 459 GSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 L E+ V+ L + + + LG+S I K++EY + Sbjct: 603 -PLKEVEMEM---VVRALEMSRGNIVHASSLLGISRNTIYRKIKEYDI 646 >UniRef50_Q3ACE2 Sigma-54 dependent transcriptional regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ACE2_CARHZ Length = 573 Score = 542 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 144/496 (29%), Positives = 236/496 (47%), Gaps = 32/496 (6%) Query: 33 IDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEP 92 + +Y + + + E++ IA ++ V + L +LEA E Sbjct: 86 VVNRTPLYYKGKIIGAIGVAQEINELKNIAD--ELENVLALK-----QTLETILEAGQEG 138 Query: 93 VLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVI 152 + +D+ V AN A LFG KL + N L F L D E V I Sbjct: 139 YMVLDLDKTVTHANKAIADLFGLKLSDIVNKPINSLTANPFFCE-LPESADDIKTEVVEI 197 Query: 153 NGQNFLMEITPV-------------YLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQD 199 NG+ + P+ Q+ +D L V L S + + Sbjct: 198 NGRQVVAFKYPIVKDYKLYGGVIKVIFQEVSDLLALAEKVNQLNSELSYYKNELTKYTSK 257 Query: 200 VSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYL 259 ++I+ P + + E +K+A + +LI G++GTGK+L A+A H S R ++ Sbjct: 258 QFTENKIIGNHPSIVRLKEIIKKIAPYNTTVLIRGESGTGKELVAHALHVESGRP-GSFI 316 Query: 260 ALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKL 311 +NCA+IPE+ E+ELFG+ G+ G FE AN G++ LDEIG+M MQAKL Sbjct: 317 KVNCAAIPENLFEAELFGYVEGAFTGAKKGGQIGKFELANNGTIFLDEIGDMPLTMQAKL 376 Query: 312 LRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLR 371 LR L + R+G+ ++VRVI AT +NL EL++K FREDLYYRLNV++L +P LR Sbjct: 377 LRVLQEKEVERLGDRKTRKINVRVIAATNQNLEELIKKKKFREDLYYRLNVISLYVPALR 436 Query: 372 DCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLD 431 + +D+ L + F+ +F E G ++ ++ + Y+WPGN+R+L+N + R ++ Sbjct: 437 ERIEDLPLLIKYFIEKFNKEYGTNVTGISPEVMDIFMNYSWPGNIRELENVLERCFNLVE 496 Query: 432 GYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLT-QLYRNYPSTRKLAKRL 490 G + + + P + E + SL + +E+ ++ L + + K A L Sbjct: 497 GKVIEKKYLP-PYILGEELKNKEFPLGQSLTNLLEAYEKELIKAALLKAKGNKSKAANLL 555 Query: 491 GVSHTAIANKLREYGL 506 G+S + +L+ + L Sbjct: 556 GISRQWLHKRLKYFNL 571 Score = 81.9 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 50/119 (42%), Gaps = 6/119 (5%) Query: 78 EHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRW 137 HL+L +L+++ ++++D + KV + N AS ++F + +++ + Sbjct: 7 NHLSLLNILDSIHNAIVAIDEEGKVIIFNKASERVFNYPAKKALGKNINEVLPFSGLNKV 66 Query: 138 LESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVA 196 L++ I +++ TP+Y + + + GA+ + + + + Sbjct: 67 LKTGESHI-GRKFKIGDNLYVVNRTPLYYKGK-----IIGAIGVAQEINELKNIADELE 119 >UniRef50_Q67SC0 Sigma-54-dependent transcriptional regulator n=2 Tax=Symbiobacterium thermophilum RepID=Q67SC0_SYMTH Length = 479 Score = 542 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 149/454 (32%), Positives = 229/454 (50%), Gaps = 37/454 (8%) Query: 85 LLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQD 144 +L++L + V++VD + V AN A+ ++ G D++ ++++ + L L S Sbjct: 32 VLDSLHDGVVAVDSEGYVIYANEANTRITGLTRDQVVGRHVSEVVPNSHILDVLASRTP- 90 Query: 145 SHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIR---MGRQL--------- 192 + + I PVY Q + GAV + R + RQL Sbjct: 91 LLGVRTRVFDHVVVSNIVPVYHQG-----RMVGAVSVFRDITEVLALSRQLDEARNTIDL 145 Query: 193 --QNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQA 250 +N+ A V+ I+ SP + + A+K A + +P+LI G++GTGK++ A H Sbjct: 146 LRENLTAAPVAEDGVIIGQSPAAQRMYLTARKAATVDSPVLIEGESGTGKEVMARLIHNR 205 Query: 251 SPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGE 302 S R +P +A+NCA+IP +ESELFG+ G+ G F+ A+GG++ LDEIG+ Sbjct: 206 SARRSQPLIAVNCAAIPGTLLESELFGYEEGAFTGSRKGGRPGLFQLADGGTLFLDEIGD 265 Query: 303 MSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNV 362 M P +QAKLLR L G RRVG V+VR+I AT +NL +LV++ FREDLYYRL V Sbjct: 266 MDPGLQAKLLRALQSGEIRRVGGTTVQKVNVRIISATNQNLAQLVREKRFREDLYYRLRV 325 Query: 363 LTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNA 422 + L LPPLR+ D+ E + R + G P + + L Y +PGN+R+L+N Sbjct: 326 IHLVLPPLRERRADLPLFLEHAMRRVCERLGRPPARFSPAALRALMAYPFPGNIRELENV 385 Query: 423 IYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGS----LDE-----ITSRFERSVL 473 + +A+ +G + D+ A T A G G L++ ER VL Sbjct: 386 VEQAVVLAEGDVIDVGDLPPDVVGAETAAAGPADRSGDGWLGLNDPGTFPTLEEVERRVL 445 Query: 474 TQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 R + S +LA+ LG+S + KL YGL+ Sbjct: 446 EAGLRAFDSKAELARHLGLSRATLYRKLARYGLA 479 >UniRef50_A4J599 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J599_DESRM Length = 575 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 151/534 (28%), Positives = 238/534 (44%), Gaps = 58/534 (10%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRR 60 MR + D L RE+L L EL + + Sbjct: 71 MRRDFSSLDEEDLEREILAFL----------------------PELRYHALV-CRNNQGD 107 Query: 61 IAGVTDVRTV---PWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKL 117 I GV V + ++A++E + E V VD V N + +L+G K Sbjct: 108 ILGVLSYDQVFHDLALRVCETEARINAVVETVDEAVCIVDNNDMVTSWNSRAEELYGIKA 167 Query: 118 DRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTG 177 + R + + H + G + L+ TPV L + G Sbjct: 168 QDIIGKPICSFFTNLVVTRVNKEWQEIRSLHHQPVPGTHVLINATPVRL-----GPKVIG 222 Query: 178 AVVMLRSTIRMGRQLQNVAAQ----------------DVSAFSQIVAVSPKMKHVVEQAQ 221 V R + + Q + D + F+ + ++ ++ A+ Sbjct: 223 GVTAERDVTEIVQLNQKLNQASSQVQRLEKEIDKFSTDRNPFAAVKGHHKRLTELINVAR 282 Query: 222 KLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA-- 279 K A+ SA +L+ G++GTGK+LFA A H+ASPR K + +NCA+IP ESE+FG+ Sbjct: 283 KAALTSAVVLLRGESGTGKELFAKAIHEASPRIDKKFCVINCAAIPPSLFESEMFGYESG 342 Query: 280 ------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDV 333 +GK G FE A+GG++ LDEI E+ MQ KLLR L DG F R+G + VDV Sbjct: 343 AFTGADKKGKIGVFEMADGGTLFLDEISELPLDMQVKLLRVLQDGVFFRIGGSTPIKVDV 402 Query: 334 RVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQG 393 R+I AT ++L +++ G FREDLYYRLNV++L +PPLR+ +DI L LF+ F+ Sbjct: 403 RIIAATNRSLEDMMAHGTFREDLYYRLNVVSLEIPPLRERREDIPELVYLFLQEFSQLYN 462 Query: 394 VPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVG 453 KL + Y+WPGN+RQLKN I R + +G + I ++ Sbjct: 463 KQISKLEPGVMATFLAYSWPGNIRQLKNIIERMVILTEGDTVLESAIPESLKLSSRQDQA 522 Query: 454 EDAMEGSLDEITSRFERSVLTQLYRN-YPSTRKLAKRLGVSHTAIANKLREYGL 506 + L +T + ER ++ + + + + A+ LG+ + + K+ + G+ Sbjct: 523 TATIG--LASVTEQTERELIIRTLKQVNGNRSEAARMLGIPRSTLYYKMHQLGI 574 >UniRef50_A6LYP8 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Clostridiaceae RepID=A6LYP8_CLOB8 Length = 574 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 130/516 (25%), Positives = 234/516 (45%), Gaps = 40/516 (7%) Query: 15 RELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMP 74 E+ +V+ ++L I + L F + ++ I ++ D + + Sbjct: 75 EEIKRPIVVNELNLILSIIPFGENTNTQGSMLIFSNVTNYSQLIHKLEEERDSKEI---- 130 Query: 75 SEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNF 134 L+ ++E + ++ +D + V M + A + G K + ++I Sbjct: 131 -------LNTVIETAYDGMIIIDKQGIVTMISNAYTEFLGIKREDAIGRHVNEVIENTRM 183 Query: 135 LRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHV-------------LTGAVVM 181 LE+ ++ H I G + P+ E V L + + Sbjct: 184 PIVLETGKEEVAQLH-KIKGSYMIASRIPIVKNGEIIGVVGKVLFRNVKELNSLYKRISV 242 Query: 182 LRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKD 241 + + + + + I+ S + +K A ++ +LI G++GTGK+ Sbjct: 243 IEKELATYKSRFREFNKANYSLENIIGESEPIVMAKAIVEKAAHTNSNVLILGESGTGKE 302 Query: 242 LFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGG 293 +FA+A H S R P++ +NCA+IP D +ESELFG+ EGK G FE AN G Sbjct: 303 IFAHAIHSESNRHEGPFVKVNCAAIPSDLLESELFGYEAGAFTGAKKEGKIGKFEIANEG 362 Query: 294 SVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFR 353 ++ LDEIG+M MQ KLLR + + +VG +++R+I AT +NL LV++G FR Sbjct: 363 TIFLDEIGDMPLHMQVKLLRVIQEREVEKVGGVASKKINIRIIAATNRNLERLVEEGKFR 422 Query: 354 EDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWP 413 EDLYYRLNV+T+ +PPLR+ DI+ ++ + + + + ++ + L Y W Sbjct: 423 EDLYYRLNVVTIEIPPLRERGNDIILISNHLIKKLSVDLDKKVKGISKEAEQYLKIYEWK 482 Query: 414 GNVRQLKNAIYRAL-TQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERS- 471 GNVR+L+N + RA+ + ++ +D+ V L +I + E++ Sbjct: 483 GNVRELENILERAINIMENSEIIQVKDLPKEITGKKVSMVP-----KKLQDILAESEKNA 537 Query: 472 VLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 ++ L + K AK L + T++ K+ +Y + Sbjct: 538 IILALRAADGNKSKAAKILDIGRTSLYEKIEKYKIQ 573 Score = 63.1 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 16/119 (13%), Positives = 45/119 (37%), Gaps = 6/119 (5%) Query: 80 LALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLE 139 L +L+ + ++ VD K+ N A+ LF +++ + +L Sbjct: 12 SKLEVILDNMFNAIIVVDSNDKILFINEAASILFDIDSKGGLGKNINEIMPDPDIEYFLS 71 Query: 140 SEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQ 198 ++ ++ V +N N ++ I P + G++++ + + + + + Sbjct: 72 TKKEEIKRPIV-VNELNLILSIIPF-----GENTNTQGSMLIFSNVTNYSQLIHKLEEE 124 >UniRef50_C6HY50 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HY50_9BACT Length = 477 Score = 540 bits (1392), Expect = e-152, Method: Composition-based stats. Identities = 131/439 (29%), Positives = 221/439 (50%), Gaps = 25/439 (5%) Query: 85 LLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFN------FLRWL 138 +L++L E V+++ + KV N A+ ++ G + + + + + Sbjct: 43 ILDSLEEGVIAIGLDKKVLYLNRAAREMLGLSQGEVFGMDCQKAMRSSVCSARCLIEKTI 102 Query: 139 ESEPQDSHNEH--VVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVA 196 ES + E + + L+ + L+D + + G V + ++ + + Sbjct: 103 ESGEPYRNYEISLTDRHRRTRLVRVNTALLKDADGH--VVGGVEIFHDVTQLAELKKELK 160 Query: 197 AQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGK 256 + AF +I+ S KM+ + + +A + +LI G++GTGK+L A+A H+ SPR Sbjct: 161 GR--YAFGKIIGQSEKMRELFDLLPVVAQSKSTVLIEGESGTGKELIAHAIHENSPRKDG 218 Query: 257 PYLALNCASIPEDAVESELFGHAPEG-------KKGFFEQANGGSVLLDEIGEMSPRMQA 309 P++ +NCA++ E +ESELFGH K G FE A+GG++ LDEIGE+S MQ Sbjct: 219 PFIKVNCAALSEGVLESELFGHVRGAFTGAVSSKPGRFELASGGTLFLDEIGEISASMQV 278 Query: 310 KLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPP 369 KLLR L + F RVG + VDVRVI AT ++L + G FR DLYYRL V+ L LPP Sbjct: 279 KLLRVLQEEEFERVGGTKTLKVDVRVIAATNRDLKAAIDAGTFRRDLYYRLRVVPLFLPP 338 Query: 370 LRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQ 429 LR+ +DI L F++R+ E G L+ + +L +++PGN+R+L+N I A+ Sbjct: 339 LRERREDIPLLISSFLSRYNAEFGKNVVGLSQEAQNILMNHSYPGNIRELQNIIEHAVLL 398 Query: 430 LDGYELRPQDIL---LPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKL 486 G + +++ P + ++ A + +L + R + + + + Sbjct: 399 STGRTIGVRELPRDLAPIPEESSFADVALSRSNALRTMEDVMIR---KAVEKTQGNMSQA 455 Query: 487 AKRLGVSHTAIANKLREYG 505 AK LG+ + + KLRE G Sbjct: 456 AKLLGIGRSTLWRKLREMG 474 >UniRef50_Q0AWW3 Sigma-L-dependent transcriptional regulator n=4 Tax=Clostridiales RepID=Q0AWW3_SYNWW Length = 696 Score = 538 bits (1386), Expect = e-151, Method: Composition-based stats. Identities = 137/517 (26%), Positives = 239/517 (46%), Gaps = 40/517 (7%) Query: 28 LRGIEIDPIGRIYL--NFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSE-----REHL 80 ++ +++ + +I L ++ I + + D+ + + E + Sbjct: 183 IKSGQVETLQKIMLNNHYFISNRSPIIKDGEIIGAVGVLQDISELEELSRELKYVKELNE 242 Query: 81 ALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLES 140 L A++E+ + + D N A + G + + S Sbjct: 243 ELDAIIESSYDGLYITDGNGMTLRLNKAFEMITGINGREFLGRHVDDIAREGIVSESVSS 302 Query: 141 ----EPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVA 196 + +G+ L +PV+ + + V +R + Q + Sbjct: 303 LALARKETVTIIQETRSGKTTLATGSPVFDK----IGNIFRVVCNVRDITELNMLKQKLE 358 Query: 197 A---------------QDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKD 241 + S +I++ S +M+ ++E +LA + + +LI G++GTGK+ Sbjct: 359 QVQGLSQHYESQLKTLRIYSGTDKIISKSTEMRKLLETVVRLAEVDSTILINGESGTGKE 418 Query: 242 LFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGG 293 L A H S RA KP++ +NC +IPE+ +ESELFG+ EGK G+FE A+ G Sbjct: 419 LIAETIHNHSARAKKPFIKVNCGAIPENLMESELFGYEYGAFTGAKKEGKAGYFELAHEG 478 Query: 294 SVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFR 353 ++ LDEIG++ +Q KLLR L RVG + VD R++ AT +NL+E+VQK FR Sbjct: 479 TLFLDEIGDLPFNLQVKLLRVLQSKEINRVGGRQALKVDTRILAATNRNLLEMVQKKQFR 538 Query: 354 EDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWP 413 EDLYYRL+V+ + +PPLRD +DI L F+A F + + +++ D+ +L Y WP Sbjct: 539 EDLYYRLHVIPVIIPPLRDRKEDIPSLIVHFIALFNRKYKLN-KRISPDVVDILMAYDWP 597 Query: 414 GNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAA-TVAVGEDAMEGSLDEITSRFERSV 472 GNVR+L+N I R + + ++ + AA + L E ER + Sbjct: 598 GNVRELENLIERLVVISSSDIISRDELPVHLSSAAVDNPQVSVSAIIPLKEAVESVERQL 657 Query: 473 LTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQK 509 L + + Y +TR++A++L V+ + + K +YG+S Sbjct: 658 LERAFAQYRTTRQMAQKLEVNASTVVRKAAKYGISPP 694 Score = 91.9 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 77/195 (39%), Gaps = 12/195 (6%) Query: 18 LDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSER 77 ++ L+ R I + E + +Y L + +M I R TD+ V Sbjct: 67 IEKLMKRDIIIGHPEEEIEDVLYPGLGRLPIADETGIMGMITR----TDLARVFLESYRN 122 Query: 78 EHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRW 137 L A++ + ++SVD +S++ + N A+ +L QK + ++ + Sbjct: 123 ISSELDAIINSTHNMIVSVDKQSRIRVFNRAAEKLLKQKAENVKGKLIDDVYPTSRLTNI 182 Query: 138 LESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVA- 196 ++S ++ + +++N F+ +P+ E + GAV +L+ + + + Sbjct: 183 IKSGQVET-LQKIMLNNHYFISNRSPIIKDGE-----IIGAVGVLQDISELEELSRELKY 236 Query: 197 -AQDVSAFSQIVAVS 210 + I+ S Sbjct: 237 VKELNEELDAIIESS 251 >UniRef50_A1HRK7 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRK7_9FIRM Length = 575 Score = 538 bits (1386), Expect = e-151, Method: Composition-based stats. Identities = 146/464 (31%), Positives = 225/464 (48%), Gaps = 35/464 (7%) Query: 72 WMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLING 131 W R+ L+A+ + + E + VD KV + N + QL+G + + H + + Sbjct: 115 WEQFRRQQAVLTAVADIVGEALTVVDTSGKVSLWNKRAEQLYGIAPEMILGHPIEEFFSN 174 Query: 132 FNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIR---- 187 L S S H G + L+ P+ + G++ R Sbjct: 175 LIITAVLASSQAISDKYHQPKPGAHVLINAAPICCDG-----SIIGSIAAERDITEIVNL 229 Query: 188 -------------MGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITG 234 + R+++ + AQ F+ I + ++ + A+K+A+ S P+LI G Sbjct: 230 TQQLCATNAKVMSLKREIKEINAQP-DPFAAICGHNTVLRQEIATARKIAISSVPVLIRG 288 Query: 235 DTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH--------APEGKKGF 286 ++GTGK++FA A H AS R P++ +NC +IP ESE FG+ +GK G Sbjct: 289 ESGTGKEVFARAIHTASRRR-GPFVVVNCGAIPPTLFESEFFGYQPGAFTGADKKGKPGL 347 Query: 287 FEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVEL 346 FE A+GG++ LDEIGE+ MQ KLLR L D +F RVG D V VDVR+I AT +NL + Sbjct: 348 FELAHGGTLFLDEIGELPKEMQVKLLRVLQDKSFYRVGGDRPVQVDVRIIAATHRNLEAM 407 Query: 347 VQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTV 406 +++ FR DLYYRLNV++L LPPLR DI L + +FA G K+ ++ V Sbjct: 408 IEQQEFRHDLYYRLNVVSLYLPPLRQRRDDIPELVHRGIQQFASLHGREIVKVEPEVMAV 467 Query: 407 LTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDIL--LPDYDAATVAVGEDAMEGSLDEI 464 Y WPGNVR+L N + R + DG L+ D+ L + +L Sbjct: 468 FLEYDWPGNVRELYNVLERLVILADGGVLKFADLPADLQQFGLLLPKKINLTAAQNLPAA 527 Query: 465 TSRFERSVLTQLYRNYP-STRKLAKRLGVSHTAIANKLREYGLS 507 T R ER+++ Q + AK+LG+ + + K++ GL+ Sbjct: 528 TERMERTIIMQALAAAGFRKAQAAKKLGIPRSTLYYKMQRLGLN 571 >UniRef50_C0QF87 Transcriptional regulator (PAS/PAC domain protein) n=2 Tax=Bacteria RepID=C0QF87_DESAH Length = 710 Score = 537 bits (1385), Expect = e-151, Method: Composition-based stats. Identities = 133/520 (25%), Positives = 238/520 (45%), Gaps = 32/520 (6%) Query: 16 ELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTV--PWM 73 EL ++L+ + + + N + ++ I +TD+ + Sbjct: 194 ELDEVLLKGVVSIGIKSTYGEHTLLCNI--TPIMTMDNINGAIIIFQDLTDLECIASELE 251 Query: 74 PSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFN 133 + + L +++E + ++ +D K + MAN + + + + +I Sbjct: 252 SVTKLYNTLQSVMEIAYDGIIVIDKKGVITMANQSIADFLHKSRENMVGKPVEDIIENSR 311 Query: 134 FLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQ 193 + +++ + H + ING ++ P+ + V + + ++ Sbjct: 312 LRKVIKTGVAELH-QLQFINGNPHVVSRMPIVRDGKALGAVGMILFSNFKDVRNLAQKFI 370 Query: 194 NVAAQDVS-------------AFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGK 240 + + F QI+ K + E+A+ A S+ +LITG++GTGK Sbjct: 371 RLDQKVAYYKNQIRNDMSNKITFDQIITSHEAFKKIKERAEIAAQSSSSILITGESGTGK 430 Query: 241 DLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANG 292 +L A + H+A K + +NCA+IP D +ESE FG+A +GK G A+G Sbjct: 431 ELMAQSIHEAGVSRDKRLVKVNCAAIPADLLESEFFGYAPGAFTGAQKQGKLGKLALADG 490 Query: 293 GSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMF 352 G++ LDEIG+MSP +Q+KLLR L D +F +G + HV RVI AT ++L ++VQ+ F Sbjct: 491 GTLFLDEIGDMSPNLQSKLLRVLQDKSFEPIGSNKTTHVSFRVIAATNQDLHQMVQEKRF 550 Query: 353 REDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAW 412 R DLYYRLNV+ ++PPLR+ PQDI+ L F+ ++ G ++ D TVL + W Sbjct: 551 RGDLYYRLNVIHFHIPPLRERPQDIILLVHFFIEKYNHILGSAIQDISDDAMTVLLEHTW 610 Query: 413 PGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAV-----GEDAMEGSLDEITSR 467 PGNVR+L+N + R + G + D+ + + + + L + Sbjct: 611 PGNVRELENVVERVANFVKGNLVDIDDLPPNLKEKEKKSPSFMAGSPLSTKQRLHKSRDD 670 Query: 468 FERSVLTQLYR-NYPSTRKLAKRLGVSHTAIANKLREYGL 506 ++ + R + K AK LG+S + + K+ + L Sbjct: 671 HDKLAIQSALREADGNKAKAAKILGISRSWLYTKMARFDL 710 Score = 76.2 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 20/147 (13%), Positives = 47/147 (31%), Gaps = 16/147 (10%) Query: 71 PWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLIN 130 + + + +L ++ V+++D K+ N A+ +LFG + + + Sbjct: 132 MFENETLLNHQMQIILNSMHNGVVAMDASGKISRINQAAERLFGITTFQAWGKPVSLFLK 191 Query: 131 GFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMG- 189 G L L ITP+ D + GA+++ + + Sbjct: 192 GLELDEVLLKGVVSI-GIKSTYGEHTLLCNITPIMTMD-----NINGAIIIFQDLTDLEC 245 Query: 190 ---------RQLQNVAAQDVSAFSQIV 207 + + + A+ I+ Sbjct: 246 IASELESVTKLYNTLQSVMEIAYDGII 272 >UniRef50_C9S238 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Geobacillus RepID=C9S238_GEOSY Length = 467 Score = 536 bits (1383), Expect = e-151, Method: Composition-based stats. Identities = 127/460 (27%), Positives = 220/460 (47%), Gaps = 25/460 (5%) Query: 68 RTVPWMPSEREH--LALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTA 125 R + ER + LL + +PVL VD K + N ++ Q+F + + Sbjct: 4 RDLERARQERLKLLREIEGLLSFITDPVLVVDAKGYIVHTNSSAEQIFERSQIIMIGKHV 63 Query: 126 AQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRST 185 + + + L++++ ++ +++ + +E + L + GA++ L Sbjct: 64 TEFVQSASLLQYIKQGKPATNLAVCIMSAKGTRLEFSC-RLHPLLVNAQVEGAILFLTKP 122 Query: 186 IRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAY 245 I + Q Q+ + ++ SP + + EQ K+A + +LI G++GTGK++ A Sbjct: 123 ILLQEQEQSSRYGTRFSLDDVIGSSPAITALKEQVMKIAKSESTVLIRGESGTGKEVLAQ 182 Query: 246 ACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLL 297 + H+ S R P++A+NCA+IPE +ESELFG+ GK G FE A GG++ L Sbjct: 183 SIHRLSHRNKGPFVAINCAAIPEALLESELFGYEEGAFTGAKKGGKPGRFELARGGTLFL 242 Query: 298 DEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLY 357 DEIG+M +QAKLLR L + RVG + VDVR+I AT K+L ++ FREDLY Sbjct: 243 DEIGDMPLYLQAKLLRVLQERRIERVGGTKSIEVDVRIIAATHKDLESMIANNQFREDLY 302 Query: 358 YRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVR 417 +RLNV+ L +PPLR+ +D+ L + ++ +F G + ++ + Y WPGN+R Sbjct: 303 FRLNVIPLYVPPLRERKEDLYELIQYYMYKFCKRLGKEPKRFSSQALKKIFDYHWPGNIR 362 Query: 418 QLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITS----------R 467 +L+N + + G + + + + + E + S Sbjct: 363 ELENMVEYIVNLEIGDLVTISSLPASIREMSKDQRHDMEEEMKEPQTVSHLPKSLYKINE 422 Query: 468 FERSVLTQLYRNYP----STRKLAKRLGVSHTAIANKLRE 503 E ++ Q + + RK A+ LG+S + KL + Sbjct: 423 VEEQLIIQALQRFGTSTEGKRKAAEALGISLATLYRKLEK 462 >UniRef50_B2A2S4 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Clostridia RepID=B2A2S4_NATTJ Length = 471 Score = 536 bits (1382), Expect = e-151, Method: Composition-based stats. Identities = 146/451 (32%), Positives = 226/451 (50%), Gaps = 26/451 (5%) Query: 83 SALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEP 142 + + +P PV+ VD K + M N A L + A ++ + + L+S Sbjct: 16 DRIFDVIPVPVILVDEKGIIRMINRAFADLLKVSKQQAIGRPAVEVDHNSKWPVVLKSGE 75 Query: 143 QDSHNEH-VVINGQNFLMEITPVYLQDENDQHVLTGAVV---------------MLRSTI 186 D +H G++ ++ P+Y D + G V+ +L + Sbjct: 76 FDIAKKHKFARTGEDAVVHRIPIYDYDSGEIVGGFGMVLFQNLKELRDLADKNKLLEKKL 135 Query: 187 RMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYA 246 +Q ++ I S KM+ + A+K A +LITG++G GK++FA A Sbjct: 136 DHYKQRVRQIYSTKYSWDNIKTCSSKMEACKQNAKKAARTDLNVLITGESGVGKEIFAQA 195 Query: 247 CHQASPRAGKPYLALNCASIPEDAVESELFGH--------APEGKKGFFEQANGGSVLLD 298 H S R+ P++ +NCA+IPE+ +ESELFG+ + EGK G FE A+ G++ D Sbjct: 196 IHNESHRSDHPFIKVNCAAIPENLLESELFGYQGGAFTGASKEGKPGKFELADKGTLFFD 255 Query: 299 EIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYY 358 EIG+M +MQAKLLR + +G R+G E VDVR+I AT KNL ELV FREDL+Y Sbjct: 256 EIGDMPKKMQAKLLRVIQEGEVERLGGQKEQEVDVRIIAATNKNLEELVATDDFREDLFY 315 Query: 359 RLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQ 418 R+NVLTLN+PPL+D +DI L E F+ E G +++ + VL +Y WPGN+RQ Sbjct: 316 RINVLTLNIPPLKDRKEDIALLAEDFLYETKQEMGEN-KQISQEAVEVLQKYDWPGNIRQ 374 Query: 419 LKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYR 478 LKN I R + + DI + ++ E L+EI + E+ V+ + Sbjct: 375 LKNIIQRLAVNAETTVIEKSDIPIKLLKQLQISESPSYPEEGLNEIVEQVEKKVIRETLE 434 Query: 479 NY-PSTRKLAKRLGVSHTAIANKLREYGLSQ 508 Y + A L + + + K+++YGL + Sbjct: 435 LYDFNKSMAASILNIPRSTLYRKMKKYGLKE 465 >UniRef50_Q3ACI2 Sigma-54-dependent transcriptional regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ACI2_CARHZ Length = 589 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 144/509 (28%), Positives = 242/509 (47%), Gaps = 53/509 (10%) Query: 51 FSSLMAEIRRIAG-VTDVRTVPWMPSERE-------HLALSALLEALPEPVLSVDMKSKV 102 S++ E+ R+ V V+TV ++ L A++E+ + + D K Sbjct: 74 VESIIEEVDRLDDLVIKVKTVKISSLLKKIKELSFLQEELEAIIESSYDGIYVSDCTGKT 133 Query: 103 DMANPASCQLFGQKLDRLRNHTAAQL-----INGFNFLRWLESEPQDSHNEHVVINGQNF 157 N A ++ G K D + +L + + + ++ + + + + N + Sbjct: 134 LRINKAYERITGIKKDEVIGRRLDELKAEGYFSEIVYKQVVKEKRPVTILQKIK-NEKEV 192 Query: 158 LMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSA--------------- 202 ++ PV + V+T V + + R+L V + Sbjct: 193 VVTGNPVLDNSGEVKRVVTN-VRDISELNMLRRELAEVKEKSKHYQRKIVELQEKLTLFC 251 Query: 203 -----FSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKP 257 F + SP MK V+ +A ++A +LI G++GTGK++ A H S R K Sbjct: 252 QAQQDFKGFIIKSPLMKDVIYKALRVARTDTTVLIIGESGTGKEVIARFIHFNSLRKDKA 311 Query: 258 YLALNCASIPEDAVESELFGHAPE--------GKKGFFEQANGGSVLLDEIGEMSPRMQA 309 +L +NC +IPE+ +ESE FG+ P GK GFFE A GG++ LDE+GE+ +Q Sbjct: 312 FLPVNCGAIPENLMESEFFGYEPGAFTGALKTGKMGFFELAQGGTLFLDEVGELPLHLQV 371 Query: 310 KLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPP 369 KLLR L R+G + VDVR+I AT +NL +LV++G FREDLYYRLNV+++ +PP Sbjct: 372 KLLRALQTKEIMRLGSTKPIKVDVRIIAATNRNLAKLVEEGKFREDLYYRLNVISIEIPP 431 Query: 370 LRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQ 429 LR ++I+P+ F+ R ++ G K ++ +L Y WPGN+R+L+N I A Sbjct: 432 LRKRKEEIIPMAMEFLTRINEKYGSE-KKFTREVLEILKEYKWPGNIRELENVIEHAYVV 490 Query: 430 LDGYELRPQDILL--------PDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYP 481 E+ +D+ + P A ++ +LDE S E+ ++ Y Sbjct: 491 SQ-DEINVEDLPIHLDSLYGEPGNIALIRKTLQNRENITLDEAISLVEKKLIEDALLKYG 549 Query: 482 STRKLAKRLGVSHTAIANKLREYGLSQKK 510 + + A LGV+ + I+ K+++Y + KK Sbjct: 550 TETRAASVLGVNQSTISRKIKKYNIDVKK 578 >UniRef50_A6TX18 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Alkaliphilus RepID=A6TX18_ALKMQ Length = 593 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 132/475 (27%), Positives = 226/475 (47%), Gaps = 27/475 (5%) Query: 52 SSLMAEIRRIAGVTDVRTVPWMPSEREH---LALSALLEALPEPVLSVDMKSKVDMANPA 108 +LM + ++A + + + +++ L +L+++ +++VD K+ N Sbjct: 123 KNLMEFLNKMADLISSKVIEQESTDQIKFLVKELETVLDSVDRGIIAVDGTGKIIHYNKR 182 Query: 109 SCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVI---NGQNFLMEITPVY 165 + LF + + + L+ F+ + Q + V +G + + P+ Sbjct: 183 AIGLFKLSENEVCDRNIKDLLEEFDVNLLFKKSRQVKNRAFVYRGKGDGFRGVFDANPIR 242 Query: 166 LQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVS-AFSQIVAVSPKMKHVVEQAQKLA 224 + EN G V + + + ++ + F I+ S V Q +K A Sbjct: 243 IGSEN-----FGIVFTFSNISDVLGIINDMTTGTMIMKFDDIIGESQLFNEVKIQGEKAA 297 Query: 225 MLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAP---- 280 S+ +LI G++GTGK+LFA A H S R KP++ +NCA+IPE +ESELFG+ Sbjct: 298 QSSSTVLIQGESGTGKELFARAIHFHSQRCKKPFIPINCAAIPEQLLESELFGYEEGAFT 357 Query: 281 ----EGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVI 336 GK G FE ANGG++ LDEIG+M +Q KLLR L + +VG + +D R+I Sbjct: 358 GAKRGGKSGKFELANGGTIFLDEIGDMPLHLQTKLLRVLQEQVIEKVGGKDFIPIDARII 417 Query: 337 CATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPR 396 AT K+L V +G FR+DL+YR+NV+ L++PPLR +D+M L + + ++ G Sbjct: 418 AATNKDLENRVLEGEFRQDLFYRINVIPLHIPPLRQRGEDLMILVSYLLNKCNEKLGKYI 477 Query: 397 PKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDA 456 ++ + V Y WPGNVR+L+N I A+ G + +D+ T + E Sbjct: 478 QEVHPGVFDVFMSYQWPGNVRELENTIEYAVNMCSGSIIMERDLPKRLSRRQTESKDESF 537 Query: 457 MEGSLDEITSRFERSVLTQLYRNYPSTRK----LAKRLGVSHTAIANKLREYGLS 507 + ER + + + +T++ A LG+ + KL+ YG+ Sbjct: 538 RGIT---SIQELERKEMIKAIAYFGNTKQAITMAATALGIGRATLYRKLKIYGIK 589 >UniRef50_C1P9P9 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Bacillaceae RepID=C1P9P9_BACCO Length = 457 Score = 534 bits (1377), Expect = e-150, Method: Composition-based stats. Identities = 132/456 (28%), Positives = 225/456 (49%), Gaps = 31/456 (6%) Query: 78 EHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLI--NGFNFL 135 E L A+L A + + V+ K +V N A+ + + + + + L Sbjct: 4 ELSYLQAVLSAENDAITIVNEKKEVIYWNDAAVRTYNIPKEMILTKKITDFFRDDDLMVL 63 Query: 136 RWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGR----- 190 + L ++ + + H ++ ++ P++ + L GAV + R ++ R Sbjct: 64 KVLRTKARITDQYHRPRPDKHVVVNARPIFDN----RGRLIGAVSVERDITQIVRLNDNL 119 Query: 191 -----QLQNVAAQ-----DVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGK 240 +L + + + + FS++ S ++ ++ A K A A LI G++GTGK Sbjct: 120 VSTSIELNELRQKMYTSYEETPFSKLKGKSRALRDTIQIAAKAAKTDAVTLILGESGTGK 179 Query: 241 DLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANG 292 ++ A A H+AS R P++ +NC SIP ESELFG+ +GK G E+A+G Sbjct: 180 EICARAIHEASARKNGPFIPVNCGSIPSALFESELFGYEPGTFTGAEKKGKAGKIEEADG 239 Query: 293 GSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMF 352 G++ LDEIGE+ MQ KLLR L + R+G+ ++VR I AT +++ +++++ F Sbjct: 240 GTLFLDEIGELPLDMQVKLLRVLQEKVIYRIGDASGRKINVRFIAATNQDIEKMMKEKTF 299 Query: 353 REDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAW 412 R DLYYRLNV+ + +PPLR DI L F+ +FA + +P P+LA D + L Y W Sbjct: 300 RSDLYYRLNVIQITMPPLRVRTDDIPVLARYFLKQFAVQYKMPEPELAPDALSFLQAYHW 359 Query: 413 PGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAME-GSLDEITSRFERS 471 PGNVR+L+N + R + + + +L T G E G+L E+ Sbjct: 360 PGNVRELRNLMERMVILSEKPFIDRASLLRFFQGNETQPSGSAIPESGTLPVEKENMEKQ 419 Query: 472 VLTQLYRN-YPSTRKLAKRLGVSHTAIANKLREYGL 506 ++ + R + AK LG+S + KL+++G+ Sbjct: 420 LIEKALRKAGGNKSAAAKELGISRVTLYQKLKKFGI 455 >UniRef50_A4J4M1 Sigma54 specific transcriptional regulator, Fis family n=8 Tax=Firmicutes RepID=A4J4M1_DESRM Length = 470 Score = 534 bits (1376), Expect = e-150, Method: Composition-based stats. Identities = 127/471 (26%), Positives = 217/471 (46%), Gaps = 31/471 (6%) Query: 64 VTDVRTVPWMPSEREHLALSA-----LLEALPEPVLSVDMKSKVDMANPASCQLFGQKLD 118 + R + E + A L+E E ++ V+ + + N + G K Sbjct: 3 IHKSRDHQIIEQELNENQVLASMWDVLIENPYEGMIVVNAQGYIIFINNTYLNILGLKKS 62 Query: 119 RLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDEN-------- 170 + + + +E+ ++ +NG+ ++ P+ + N Sbjct: 63 DAIGKHVWDVTSHSQLPQVIETGRPILYD-FWEVNGRKLIVVRIPIINNEGNVIGAIGKS 121 Query: 171 ------DQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLA 224 +L + +L + ++ + + ++ S +K + + A+K+A Sbjct: 122 LFTDIPSGKLLFTKLQVLEKELAFYKEEIRKVYKAKYSCKNLIGESESVKEIKKLARKVA 181 Query: 225 MLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPEG-- 282 ++ +LITG++GTGK+L A A H A R +P++ +NCA++PE+ +E+ELFG+ Sbjct: 182 SSNSTILITGESGTGKELLAQAIHNAGCRNQRPFVRVNCAAVPENLLETELFGYDDGAFT 241 Query: 283 ------KKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVI 336 K G FE A GG++ LDEIGE+ MQ+KLL L + RVG V +DVRVI Sbjct: 242 GAKKGGKPGKFELAQGGTIFLDEIGEIPLTMQSKLLAVLQERELERVGGIKTVPLDVRVI 301 Query: 337 CATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPR 396 AT +NL ++V+ G FREDLYYRLNV+ LP LR+ +DI L + + Sbjct: 302 SATNRNLEDMVKNGTFREDLYYRLNVINFRLPSLRERSEDIPLLVNYLTHKLNKKLNCHV 361 Query: 397 PKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDA 456 +LT+Y WPGNVRQL+NA+ R + D L + + + + Sbjct: 362 EGYTEQAMQLLTKYHWPGNVRQLENALERMFSFTDDKILSTEHMPFLKKIVNVNSSEVNT 421 Query: 457 MEGSLDEITSRFERS-VLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 SL E + E+ +L L + + K AK L + + + K+++Y + Sbjct: 422 --KSLAETIAETEKKMILDALQKVDGNRNKAAKLLDIHLSVLYRKIKKYDI 470 >UniRef50_A6LVD4 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LVD4_CLOB8 Length = 689 Score = 533 bits (1375), Expect = e-150, Method: Composition-based stats. Identities = 141/548 (25%), Positives = 247/548 (45%), Gaps = 47/548 (8%) Query: 3 LEVFCEDRLGL-TRELLDLLVLRGID------LRGIEIDPIGRIYLN----FAELEFESF 51 L + D +G E+++ L I+ L EI + +N + + + Sbjct: 144 LGISSGDAIGKKVYEIIEFTNLHEINRTGKSELMVKEIINNRILLINRTPIIIDKKPKGA 203 Query: 52 SSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQ 111 ++ +I ++ V D + L +LE + + + ++ + N A + Sbjct: 204 LAVFNDISKLEKVKD----ELKTVKDLKERLQLILETVQDGICVINSDGYITYVNKAYLR 259 Query: 112 LFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDEND 171 + +K + + N + ++ L++ NG + + P+ + E Sbjct: 260 ILNEKEEDILNKNIRDVSPEGARIKVLKTGESIIGAISYKENGVIIVSNVNPIVIDGEIT 319 Query: 172 QHVLTGAVVMLRSTIRMGRQLQNVAAQDVS-------------AFSQIVAVSPKMKHVVE 218 + V + ++ +L V+A+ AFS+ + S K+ + Sbjct: 320 G--VVSIVKNVTEVQKLSEKLTQVSAKADYLEEELMRTKKPDSAFSKYIGHSGKILDALA 377 Query: 219 QAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH 278 K A +LI G++GTGK+L A H +S + P++ +NCA+IP++ +ESELFG+ Sbjct: 378 TTLKAAKTDTTVLIRGESGTGKELIAEGIHFSSKNSKGPFIRVNCAAIPQNLLESELFGY 437 Query: 279 APE-------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHV 331 K G FE A G++LLDEIGEM MQAK+LR + + F+R+G + + + Sbjct: 438 EKGAFTGAIKRKLGKFELAQNGTILLDEIGEMDKSMQAKVLRVIQEKEFQRIGGEETIKI 497 Query: 332 DVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADE 391 +VR+I AT +NL E+V+ FREDLYYRLNV+ + LPPLR+ QDI PL E F+ + Sbjct: 498 NVRIIAATHRNLEEMVKSMEFREDLYYRLNVIPIFLPPLRERKQDIAPLLEHFIDKIGKR 557 Query: 392 QGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYD----- 446 + D L Y WPGN+R+L+N + R + + + D+ Sbjct: 558 INKRITVVTNDAMESLLEYKWPGNIRELENLVERIMALNETEVIELSDLPAYMRKDINTV 617 Query: 447 AATVAVGEDAMEGSLDEI-----TSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKL 501 + + L E +E+ ++ + + Y S K LG++H +A K Sbjct: 618 KNAIKSKNNNEIDMLIETDEILPLKEYEKIIIEKALKKYGSYNAAGKALGLTHKTVAAKA 677 Query: 502 REYGLSQK 509 R+YG+ +K Sbjct: 678 RQYGIEKK 685 Score = 80.8 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 22/190 (11%), Positives = 67/190 (35%), Gaps = 5/190 (2%) Query: 13 LTRELLDLLVLRGIDLRGIEIDPIGRIYLNFA-ELEFESFSSLMAEIRRIAGVTDVRTVP 71 + ++ +L + L +++ +I + E + L ++ + D T+ Sbjct: 41 IYKDKKKILATSLMPLVLLKVKQNEKIIVEVHGEDPKNALDELCDFLQSDFDLEDKSTIN 100 Query: 72 WMPSEREHLA--LSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLI 129 + + + L + +P +++ D K + + N + +L G ++I Sbjct: 101 QVDNIINNNTITLEHVFSNIPNGIIATDEKDIISIFNEEAERLLGISSGDAIGKKVYEII 160 Query: 130 NGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQ-DENDQHVLTGAVVMLRSTIRM 188 N + + + + IN + L+ TP+ + + + L Sbjct: 161 EFTNLHEINRTGKSELMVKEI-INNRILLINRTPIIIDKKPKGALAVFNDISKLEKVKDE 219 Query: 189 GRQLQNVAAQ 198 + ++++ + Sbjct: 220 LKTVKDLKER 229 >UniRef50_C8X1R7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X1R7_DESRD Length = 471 Score = 533 bits (1374), Expect = e-150, Method: Composition-based stats. Identities = 122/462 (26%), Positives = 215/462 (46%), Gaps = 30/462 (6%) Query: 80 LALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQL----------I 129 L+ +++++ E V ++D++ ++ N + + G + L Sbjct: 12 RFLNQIMDSMAEGVFTLDVQGRITSWNRSMEDITGYSASEALGRSCRFLGFSHCLGTLCP 71 Query: 130 NGFNFLRWLESEPQDSHNEHVV-INGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRM 188 + L E ++ + G++ + ++D+N L G V + + Sbjct: 72 ADIHQCGILRHEQPEAKECVLRHREGRDVPVIKQARVVKDDNG--ELIGIVETVTDMTEL 129 Query: 189 GRQLQNVAAQ-----DVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLF 243 + + I+ S M+ V + + A + +LI G++GTGK+L Sbjct: 130 QKARHKAEEATRLLGQHYSLGNIMGKSEVMQEVFSRVRAAAASRSTVLIQGESGTGKELI 189 Query: 244 AYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE-------GKKGFFEQANGGSVL 296 A A H S +A +P++ +NC+++ E +ESELFGH + G FE+A+ GS+ Sbjct: 190 ARAIHYNSDQADQPFVTVNCSALTETLLESELFGHVKGAFTGAVRDRAGRFEEAHRGSIF 249 Query: 297 LDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDL 356 LDEIGE+S +Q KLLR L + RVG+ +D+RVI AT ++L EL+ +G+FR+DL Sbjct: 250 LDEIGELSQTIQVKLLRVLQEREVERVGDSQTRTIDIRVIVATHRDLNELLAQGVFRQDL 309 Query: 357 YYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNV 416 YYRL V + LPPLR +D+ L F+A+ + G LA + ++ Y WPGNV Sbjct: 310 YYRLKVFPITLPPLRQRREDLPLLVNHFIAKQNEATGKRVTGLAPEAMRLVFEYHWPGNV 369 Query: 417 RQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRF-----ERS 471 R+L+NAI A G +++ D+ + + Sbjct: 370 RELENAIEHAFVLTSGEQIQVNDLPAEIITPRPSPERAREAGVPRTAGSRQHHEQPDREQ 429 Query: 472 VLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKKNEE 513 +L L N + +A++LGVS TA+ ++++G+ + + Sbjct: 430 LLALLEANQWNKAAVARQLGVSRTAVWKYMKKWGIPLQPEPD 471 >UniRef50_A3YA14 Sigma-54 dependent transcriptional regulator n=1 Tax=Marinomonas sp. MED121 RepID=A3YA14_9GAMM Length = 529 Score = 532 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 185/540 (34%), Positives = 293/540 (54%), Gaps = 44/540 (8%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRR 60 MRLE+ DR+G+++E+L + D+R +E+ + ++ + ++ ++ Sbjct: 1 MRLEIRSNDRIGISQEILHIFSKSACDIRAMEVVTG--VTYVHVNESYQDSAKIIEQLYL 58 Query: 61 IAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRL 120 + GV + V MP+ER L+ALL +P+P++ +D + + N A+ L + + L Sbjct: 59 VQGVLSCQEVALMPAERRENHLTALLNRIPDPIIDLDENACILALNHAAIALLDRPDETL 118 Query: 121 RNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVV 180 + + L+ + ++ ++ + ++ EI+PV ++ + + GA++ Sbjct: 119 EGLSINTFTDQ----NLLQGLGANLSSQSILFKQKAYMAEISPVLMEGK-----VRGALL 169 Query: 181 MLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGK 240 MLR+ +GRQ+ + +Q QI+ S ++ + +Q ++ A L P+LI G+TGTGK Sbjct: 170 MLRNMNSLGRQMSLMQSQKEQGLEQIIGESETVQLLKQQTRRFAQLQLPVLIQGETGTGK 229 Query: 241 DLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANG 292 +L A HQ S + +LALNCAS+PE +ESELFG+A GK G E A+G Sbjct: 230 ELIARGLHQESEQRESAFLALNCASLPEHLLESELFGYASGAFTGAKKGGKPGLLELADG 289 Query: 293 GSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMF 352 G++ LDE+ EMS +QAKLLRFL D FRRVG HE+ V+VR+I AT ++L +L++ G F Sbjct: 290 GTLFLDEVAEMSIYLQAKLLRFLQDFRFRRVGGSHEISVNVRIISATHQDLQQLIETGRF 349 Query: 353 REDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAW 412 R DLYYR+NVL L LPPLR DI+ L + F+ A + +P PK++ L Y+W Sbjct: 350 RADLYYRINVLNLVLPPLRQRGDDILLLVKHFIHSAARQVDMPTPKISESALARLKAYSW 409 Query: 413 PGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGED---------AMEGSLDE 463 PGN+RQL+N ++R + G L ++I A +D E LD+ Sbjct: 410 PGNIRQLQNLLFRIVALNRGEWLSDKEINESLNLTFASASKQDHQPDANLSVTPEVPLDK 469 Query: 464 ----------------ITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 + FE S+L LY YPSTRKLAKRLGVSH +A KL+++ + Sbjct: 470 VFDDVIENENLVSWAGAQANFEASLLNHLYPLYPSTRKLAKRLGVSHNKVALKLKQHNIK 529 >UniRef50_B8FIT8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FIT8_DESAA Length = 588 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 149/468 (31%), Positives = 234/468 (50%), Gaps = 29/468 (6%) Query: 61 IAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRL 120 + VTD R M + L A+ ++ + +++VD KV AN A+ L G + Sbjct: 131 MRDVTDRRKAE-MELAKHKTRLEAIFRSVKDAIVTVDQDLKVIDANKAAATLCGIAAKNV 189 Query: 121 RNHTAAQLINGF------NFLRWLESEPQDSHNE----HVVINGQNFLMEITPVYLQDEN 170 +N+ A L+ + + H Q + P+ QD Sbjct: 190 KNNPFALCPTDCCQACRDVLAETLKRKTAIREFQVECNHKQRPQQKVSLSSAPLESQDGE 249 Query: 171 DQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPL 230 GAV+++R R+ + + Q+ + F I+ S KM+ V + + LA + Sbjct: 250 ----FLGAVLVIRDITRLVDLEREL--QERNQFHNIIGASHKMQAVYQLLENLADFETTV 303 Query: 231 LITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE-------GK 283 LITG++GTGK+L A A H RA KP++++NC+++ E+ +ESELFGH Sbjct: 304 LITGESGTGKELVAKALHHTGSRAFKPFVSVNCSALAENLLESELFGHVKGAFTGAIRDY 363 Query: 284 KGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNL 343 +G F+ A+ G++LLDEIG++SPR+Q KLLR L + F RVG+ + VDVRVI T ++L Sbjct: 364 QGRFQAAHTGTLLLDEIGDISPRIQLKLLRVLQEREFERVGDVQPIKVDVRVIACTNQDL 423 Query: 344 VELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADL 403 E V G FREDLYYRLNV+ + LPPLR+ +DI L + F ARF + + P ++ + Sbjct: 424 KEKVGLGEFREDLYYRLNVMEIKLPPLRERREDIPLLADHFTARFEKKFNITIPGVSDKV 483 Query: 404 NTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDE 463 Y WPGNVR+L+++I RA + + I +A +++ + + DE Sbjct: 484 MNAFMNYHWPGNVRELEHSIERATVLCRDKMISLEHIPGEIAEAYSLSGPRLKKQPAADE 543 Query: 464 ITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKKN 511 ++ L R + K A+ LGVS I K+ +YG+ Sbjct: 544 P-----NEIIDALKRTGWNKAKAARLLGVSRKTIYRKIEKYGIQSPAE 586 Score = 43.4 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 21/138 (15%), Positives = 44/138 (31%), Gaps = 11/138 (7%) Query: 72 WMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNH-------- 123 +E AL + + + + D+ NPA C++ G ++ Sbjct: 14 LEKVTQERDALLTVFLEIEDGYVECDLAGFTQYFNPALCRIVGYPPREMKGMGYKTYLDK 73 Query: 124 -TAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVML 182 A Q+ FN + + + E +G ++EI+ N + G ++ Sbjct: 74 ENAQQVFRVFNEVYLTGQPKKAFNYEITRKDGSKSVVEIS--ITLRRNKEGEPDGYRCIM 131 Query: 183 RSTIRMGRQLQNVAAQDV 200 R + +A Sbjct: 132 RDVTDRRKAEMELAKHKT 149 >UniRef50_A1VFM6 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfovibrio vulgaris RepID=A1VFM6_DESVV Length = 569 Score = 531 bits (1368), Expect = e-149, Method: Composition-based stats. Identities = 150/511 (29%), Positives = 238/511 (46%), Gaps = 28/511 (5%) Query: 12 GLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVP 71 GL +L + +D + YL +E ++ + +A + D R Sbjct: 71 GLEAPVLLVTGNPSLDTASRAVSTGAFEYLIKP-VERDALLAAVARAHAHKSLQDERAAL 129 Query: 72 WMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLING 131 +R L A+ ++P+ ++SV +V N A + + + ++ Sbjct: 130 HDELQRLRAHLEAIFRSVPDVLVSVGRDGRVVRINDAGLGVLRLSGEEVEGRHWQEVFGE 189 Query: 132 -----FNFLRWLESEPQDSHNEHVVI---NGQNFLMEITPVYLQDENDQHVLTGAVVMLR 183 + LR Q V I G + + E++ L+ E + GAV++LR Sbjct: 190 WESQLGDVLRHALESRQRVPRRRVNITVDEGASQVFEVSASPLRGETGDY--LGAVLVLR 247 Query: 184 STIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLF 243 R+ A +V +SP M+ + + LA +L+TG++GTGK+L Sbjct: 248 DISRLAACCPPGGAPGEW---GLVGLSPAMQRIYHLLEDLAPTDTTVLVTGESGTGKELV 304 Query: 244 AYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE-------GKKGFFEQANGGSVL 296 A A H A PRA P + +NCA++PE +ESELFGH + G F+ A+GG++ Sbjct: 305 AEALHNAGPRATGPLIKVNCAALPETLLESELFGHVRGAFTGALRDRVGRFQLAHGGTIF 364 Query: 297 LDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDL 356 LDEIG++SP++Q +LLR L + F RVG+ VDVRVI AT +NL E V G+FREDL Sbjct: 365 LDEIGDLSPQVQLRLLRVLQEREFERVGDTRTTRVDVRVIAATHRNLRERVASGLFREDL 424 Query: 357 YYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNV 416 YYRL V+ L++PPLR+ +D+ L E FV F + + L ++WPGNV Sbjct: 425 YYRLRVVELHMPPLRERHEDLALLAEHFVGVFNQQFSRCVMGFTEAASRALMTHSWPGNV 484 Query: 417 RQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQL 476 R+L++A+ G + D+ G +A E + E +V L Sbjct: 485 RELRHAVEHGFILCKGERIDLADLPPDVQ-------GTEASVFPRAERSGVHEAAVREAL 537 Query: 477 YRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 + + + A+ LGV+ + KL EYG+ Sbjct: 538 KKAGGNKARAARLLGVARQTLYRKLAEYGIR 568 >UniRef50_Q5WKW0 Transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WKW0_BACSK Length = 451 Score = 531 bits (1368), Expect = e-149, Method: Composition-based stats. Identities = 144/449 (32%), Positives = 229/449 (51%), Gaps = 26/449 (5%) Query: 83 SALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEP 142 A+L+A+ + +L +D + V N ++ G + ++ + L+ + Sbjct: 4 HAILDAIQDGILVIDKQGIVKKINNEYTRITGVCAQDIIGKPLLEVRPEAQLVSTLKDKS 63 Query: 143 QDSHNEHVVINGQNFLMEITPVYLQDENDQHV-----------LTGAVVMLRSTIRMGRQ 191 +NG+ +L+++ P++ D+ V LT + + I+ +Q Sbjct: 64 VRVGVYR-KVNGREYLVDMAPIFDGDQVVGAVSICKGKQEVLDLTKTIEQQKQQIQWLQQ 122 Query: 192 LQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQAS 251 + Q F I+ + +K V A+K A P+LITG++GTGK+LFA A H+ Sbjct: 123 KVEASFQAAHHFESIIGYNQGLKEVTAIARKAATAPFPVLITGESGTGKELFAQAIHRGG 182 Query: 252 PRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGFFEQANGGSVLLDEIGEM 303 A +P++ +NCA+IP D +ESELFG+ GK G FE A+ G++ LDEIGE+ Sbjct: 183 KNASQPFVPINCAAIPTDLLESELFGYETGAFTGAQKNGKLGLFELADNGTLFLDEIGEL 242 Query: 304 SPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVL 363 +Q+KLLR L +GT RR+G E V R+I AT +NL +LV KG+FREDLYYRL V Sbjct: 243 PLSLQSKLLRVLQEGTIRRLGALKEKRVCTRIIAATNQNLADLVSKGLFREDLYYRLCVF 302 Query: 364 TLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAI 423 L++PPLR+ +DI L + +A +D + V + ++ + L Y WPGNVR+LKNA+ Sbjct: 303 QLHIPPLRERKEDIPLLAKTLLASQSDAKAVGQVNISDEALERLKHYHWPGNVRELKNAL 362 Query: 424 YRALTQLDGYELRPQDIL--LPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYP 481 AL +D L P + L SL ER ++T + N Sbjct: 363 QFALCMMDEPVLHPSHLPPHLATDQWQRSTPMSFTPPTSLKAGLEEAERQLITNVLANCD 422 Query: 482 S----TRKLAKRLGVSHTAIANKLREYGL 506 + ++ AKRL +S + NK++++ L Sbjct: 423 NHLEGKKQAAKRLNISLATLYNKMKKHRL 451 >UniRef50_A7GID7 Sigma-54 dependent transcriptional regulator n=10 Tax=Clostridium RepID=A7GID7_CLOBL Length = 542 Score = 531 bits (1368), Expect = e-149, Method: Composition-based stats. Identities = 137/485 (28%), Positives = 235/485 (48%), Gaps = 41/485 (8%) Query: 45 ELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDM 104 ++++ +S + +I+ V DV ++ +L + E ++ VD + M Sbjct: 75 TIDYKLYSEMKKDIKYYKSVLDV--------------VNKVLYTINECIVVVDQNGIIIM 120 Query: 105 ANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITP- 163 + + K +I R L++ + E ING+ + P Sbjct: 121 MSECYKKFINCKDPE--GKYVGDVIKDTMLHRVLKTGNIE-SGEVQKINGKQVITMRIPL 177 Query: 164 ------------VYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSP 211 + +D ND + L G + ++T + + F IV S Sbjct: 178 KKEGRIIGAIGKIMFKDVNDFYFLYGKLNKSKNTHKCYDNKSEKNRRAKYFFKDIVGDSS 237 Query: 212 KMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAV 271 + ++ A+K A ++ +LI G++GTGK+L+A++ H AS R P++ +NC +IP + + Sbjct: 238 ESNNIKSLAKKSANTNSNVLIVGESGTGKELYAHSIHNASNRRLGPFIKINCGAIPAELL 297 Query: 272 ESELFGHAPEGKKG--------FFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRV 323 ESELFG+ G FE ANGG++ LDEIG+M MQ KLLR + + +V Sbjct: 298 ESELFGYEDGAFTGAKKGGKKGKFELANGGTIFLDEIGDMPMCMQVKLLRVIQEREVEKV 357 Query: 324 GEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTEL 383 G + +DVR+I AT KNL +LV+K FREDLYYRLNV+ +N+P LR+ +DI+ +++ Sbjct: 358 GGNILKKIDVRIIAATNKNLEKLVEKNKFREDLYYRLNVIRINVPSLRERKEDILLISDF 417 Query: 384 FVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGY-ELRPQDILL 442 V + + G+ ++ + L Y WPGN+R+L+N I R+ LD ++P+ + Sbjct: 418 LVKKVSHRLGICIKGISKEAKEYLCNYNWPGNIRELENVIERSANLLDSDFVIKPKHLP- 476 Query: 443 PDYDAATVAVGEDAMEGSLDEITSRFERSVLTQ-LYRNYPSTRKLAKRLGVSHTAIANKL 501 + + + L +I S E+ V+ L +N + K +K LG+S + K+ Sbjct: 477 KEILKSYIVKAPTKENKYLKDIISEVEKEVICNCLEKNNGNKNKTSKILGISRANLYKKI 536 Query: 502 REYGL 506 EY + Sbjct: 537 SEYNI 541 >UniRef50_A1HRA8 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRA8_9FIRM Length = 621 Score = 530 bits (1367), Expect = e-149, Method: Composition-based stats. Identities = 136/451 (30%), Positives = 215/451 (47%), Gaps = 33/451 (7%) Query: 74 PSEREHLAL-SALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGF 132 E+ +L +L+ + ++SV+ ++ + NP + +L + Sbjct: 187 ELEKAKASLFRTVLDFAYDGIISVNQDQRITIFNPIAERLTKIDGAAAIGKKITDIWPEL 246 Query: 133 NFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRS-------T 185 + L + +D + + ++G L P+ + + GAV + Sbjct: 247 GLEKVLTTG-RDELGQLLKVSGTRVLCNKVPIVVNGK-----PVGAVATFQDAGNIQQME 300 Query: 186 IRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAY 245 R+ R++ F IV SP+++H V AQ+ A + +LI G+TGTGK++FA Sbjct: 301 ARIRREIYARGHVATFTFEDIVGDSPQIRHTVHIAQEFAQTHSSVLILGETGTGKEVFAQ 360 Query: 246 ACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGFFEQANGGSVLL 297 + H AS RA P++A+NCA++P +ESELFG+ GK G FE A+GG++ L Sbjct: 361 SIHNASARANGPFVAINCAALPSQILESELFGYVGGAFTGASQKGKPGLFELAHGGTIFL 420 Query: 298 DEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLY 357 DEI EM Q KLLR L + R+G D + VDVRVI AT +NL LV++ FR DLY Sbjct: 421 DEIAEMDYVTQGKLLRVLQEKKVMRLGSDRVIPVDVRVIAATNQNLSRLVRENKFRADLY 480 Query: 358 YRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVR 417 YRLNVL L LPPLR+ DI+ E F+ + + Q L R+ WPGNVR Sbjct: 481 YRLNVLRLKLPPLRERGADIIRYAEFFLEKHSAAQNRRL-AFTPAALERLARHPWPGNVR 539 Query: 418 QLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLY 477 +L+N I R + ++ + ED + ++ + E+ + Q Sbjct: 540 ELQNTIERIVAVCRQPQVDA---------GLVAQMLEDDADSGIEVAAADSEKEQIRQAL 590 Query: 478 R-NYPSTRKLAKRLGVSHTAIANKLREYGLS 507 + A+ LGVS + + K+++ GL Sbjct: 591 AIAKGKQGEAARLLGVSRSTLWRKMKKLGLR 621 >UniRef50_A1HLP6 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Firmicutes RepID=A1HLP6_9FIRM Length = 635 Score = 530 bits (1367), Expect = e-149, Method: Composition-based stats. Identities = 133/492 (27%), Positives = 225/492 (45%), Gaps = 30/492 (6%) Query: 27 DLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALL 86 D I+ + E+ + + IA V + ++ Sbjct: 148 DAISIKQATRLGLKGVLITSGKEAIVQAIHDAENIAEV-------RISERERAELFRIIV 200 Query: 87 EALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSH 146 + + ++++D ++ + NP + ++FG I N R L + Sbjct: 201 NSSHDGIIAIDDAERITLFNPVAEKVFGIPAAAAVGAKIRDKIPNTNLPRILRQGGSE-D 259 Query: 147 NEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQ-------D 199 E + + + + + + + GAV R + R + V + Sbjct: 260 GELQYVGEKVIVTQRFAIKVNG-----RVVGAVANFRDVTELQRLERLVRQKLHAKGLVA 314 Query: 200 VSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYL 259 + I+ S +K ++E+A+K A + A +LI G+TGTGK++ A H AS RA P++ Sbjct: 315 RIRLADIIGESAALKGLIERARKFAAVDATVLIVGETGTGKEMLAQGIHNASHRANGPFV 374 Query: 260 ALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKL 311 A+NCA++PE+ +ESELFG+A GK G FE A+GG++ LDEI EM +Q++L Sbjct: 375 AVNCAALPENLLESELFGYAEGAFTGAKKGGKPGLFELAHGGTIFLDEISEMPLPLQSRL 434 Query: 312 LRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLR 371 LR L + R+G D + VDVR+I A+ +NL LV+KG+FR+DLYYRL++LTL PPLR Sbjct: 435 LRVLQEREVLRIGGDRIIPVDVRIIAASNRNLRNLVEKGLFRDDLYYRLHLLTLTAPPLR 494 Query: 372 DCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLD 431 + +DI L F+ + + + + +L Y WPGNVR+L+NAI R + + Sbjct: 495 ERKEDIPLLVRAFLRKHSH-LNPLVSDIDSLAVQLLAEYEWPGNVRELENAIQRLIILSE 553 Query: 432 GYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLY-RNYPSTRKLAKRL 490 + + + + + E + + + + AKRL Sbjct: 554 EQIIGKAAVSALLEELQGGQTLPFRGKQQAAPSLADLEAQYIAAVLAEENNNKSRAAKRL 613 Query: 491 GVSHTAIANKLR 502 G+ + + KLR Sbjct: 614 GIDRSTLWRKLR 625 >UniRef50_A9VII1 PAS modulated sigma54 specific transcriptional regulator, Fis family n=16 Tax=Bacillales RepID=A9VII1_BACWK Length = 553 Score = 530 bits (1366), Expect = e-149, Method: Composition-based stats. Identities = 131/453 (28%), Positives = 220/453 (48%), Gaps = 28/453 (6%) Query: 83 SALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLI--NGFNFLRWLES 140 + +++ V +D K V + ++F K + + + L+ L Sbjct: 101 NTVIQTTDSSVTVIDEKECVRTWTDGAEKIFSVKHNEIIGQPITRFFDYKDLEILQSLHD 160 Query: 141 EPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGA-----------VVMLRSTIRMG 189 H L+ PVY DE V++ + + + Sbjct: 161 GKSIIAQFHQPRPDLFVLINSNPVYCNDEIIGAVVSETDVTNQVALNEKLFNMSHEMHRL 220 Query: 190 RQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQ 249 Q F + SP ++ ++ A+K+ + + +LI G++G GK++FA A H+ Sbjct: 221 EQEVAKYKDTSDPFLAMNGKSPVIQRTIQLARKVCSVKSTVLILGESGVGKEVFAKAIHE 280 Query: 250 ASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGFFEQANGGSVLLDEIG 301 AS A P++++NC +IPE ESELFG+ GKKG E A GG++ LDEIG Sbjct: 281 ASETANAPFISINCGAIPEALFESELFGYERGAFSGANSKGKKGKIELAQGGTLFLDEIG 340 Query: 302 EMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLN 361 EM MQ KLLR L + + RVG + E+++D R+I AT ++L E ++KG FREDLYYRLN Sbjct: 341 EMPLDMQVKLLRVLQERKYYRVGGEKEINIDFRIIAATNRDLQEEMRKGTFREDLYYRLN 400 Query: 362 VLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKN 421 V++L++PPLR+ +DI+ LT F+ F+ P L + + L Y WPGN+R+L+N Sbjct: 401 VVSLHIPPLRERREDIIELTYTFLNDFSINYNRPIRDLPSSIMHELLHYNWPGNIRELRN 460 Query: 422 AIYRALTQLDGYELRPQDIL------LPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQ 475 + R + ++ + + L + + ++ + + SL E E+ ++ + Sbjct: 461 VVERLVVFATDGIIKQEYLPFHTNDTLENETSHSLLLSNNNTILSLQEEMDEHEKKIIER 520 Query: 476 LYR-NYPSTRKLAKRLGVSHTAIANKLREYGLS 507 R + + AK+LGV+ + N+L+ GL Sbjct: 521 ALRILDGNKLECAKQLGVTRATLYNRLKRLGLQ 553 >UniRef50_B6FY43 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FY43_9CLOT Length = 590 Score = 529 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 136/514 (26%), Positives = 238/514 (46%), Gaps = 28/514 (5%) Query: 17 LLDLLVLRGIDL-RGIEIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVP---W 72 + D++ + + + +G+ ID + + E ++ + +I G+ + + Sbjct: 82 IKDIMKKKVVSVEKGMPIDECRDLMIK----ENIGILPVVDDNGKITGILRQEHIRDYLY 137 Query: 73 MPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGF 132 M E + L ++ + E + +V+ + V + N + +G K D + + + Sbjct: 138 MQLEEYGITLKYIIGHIREGICAVNNEGVVILWNSFMEERYGIKSDDIVGRPISDFLEDT 197 Query: 133 NFLRWLESEPQDSHNEHVVINGQNF-LMEITPVYLQDENDQHVLTGAVVM--------LR 183 R L S + L+ P++ E V T V L Sbjct: 198 ICERVLRRRIGISDVYSTYKKQDMYGLVHANPIFFGGEFVGVVCTELDVTEARNLSFELE 257 Query: 184 STIRMGRQLQNVAAQDVSA-FSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDL 242 T + LQ+ + F I+ S K++ A+++A S+ + I G++GTGK++ Sbjct: 258 KTNEKLKYLQDEVKNLSNGVFEGILGKSDKIEKAKAIAKQIAKTSSSIFIWGESGTGKEV 317 Query: 243 FAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGS 294 F+ A H+ S R ++ +NC++IP + ESE FG+ +GK G FE A G+ Sbjct: 318 FSRAIHEQSGRK-GSFVPVNCSAIPAELFESEFFGYESGAFTGANKKGKSGIFELAKDGT 376 Query: 295 VLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFRE 354 V LDEI ++ MQAKLLR L + RRVG + + ++ R+I AT K+L ++V++ FRE Sbjct: 377 VFLDEIADLPLNMQAKLLRVLQEKEVRRVGGEKTIKINPRIISATNKDLEKMVKEEKFRE 436 Query: 355 DLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPG 414 DLYYRLNV+ + +PPLR+ +DI L F+ E G PR L+ + +L Y W G Sbjct: 437 DLYYRLNVVEIKIPPLRERKEDIGILLHYFLDEMCRENGKPRMSLSKEAYKILENYRWKG 496 Query: 415 NVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFE-RSVL 473 N+R+LKN + + D + I ++A + ++ L + E +++ Sbjct: 497 NIRELKNTVENMVVLSDSSIIEKDAIPSYIVESAKNSTDDEDYPLDLTSAIEKLEIKNIT 556 Query: 474 TQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 L + + K AK L + T + KL YG+ Sbjct: 557 KALEMSKGNKAKAAKILNIPRTTLYYKLDLYGIK 590 >UniRef50_C9S255 Proprionate catabolism activator, Fis family n=2 Tax=Geobacillus RepID=C9S255_GEOSY Length = 639 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 137/471 (29%), Positives = 228/471 (48%), Gaps = 27/471 (5%) Query: 60 RIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDR 119 + ++ E+ + A++ A+ E +L VD + NP + +L G Sbjct: 171 ALETAVELADQRRSEIEKR-QKIQAMMRAVHEGILYVDTNGLLMEINPVAEKLLGVSAQD 229 Query: 120 LRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAV 179 + + ++ + + G L+ PV Q E L GAV Sbjct: 230 VIGKSIDKVAPEIKLDDVFKRGKPLLNVAQKTKQGM-LLVNRIPVVHQGE-----LIGAV 283 Query: 180 VMLRSTIRMGRQLQNVAAQ-------DVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLI 232 ++ + + + + + + F I+ + ++++AQ A A +LI Sbjct: 284 ATIQDAQAVQKAEKAIRHRVYSKGLLAKATFEHIIGKNSTFMKLIDKAQHYAQTDATILI 343 Query: 233 TGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKK 284 G+TGTGK+LFA + H AS R P++A+NCA++PE +ESELFG+ GK+ Sbjct: 344 RGETGTGKELFAQSIHNASNRNRHPFVAVNCAALPESILESELFGYEEGAFTGARKGGKQ 403 Query: 285 GFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLV 344 G FE A+ G++ LDEIGEMS +Q++LLR L + R+G D + +DVR+I AT ++L Sbjct: 404 GLFELAHRGTIFLDEIGEMSLPLQSRLLRVLQEKEVMRLGSDMVIPIDVRIIAATNRDLK 463 Query: 345 ELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVP-RPKLAADL 403 +V+ G+FR+DLYYRLNVL++ LPPLR+ D+ L F+ + + K+ + + Sbjct: 464 SMVKDGLFRQDLYYRLNVLSIELPPLRERLDDLPDLFRFFLKNY--KLDKQLIEKVLSIM 521 Query: 404 NTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDE 463 VL + WPGN+R+L+N R L + ++L + E L + Sbjct: 522 LPVLCHHNWPGNIRELENIAERVSVLLKAHV-TMDEVLAEVKKELFGSHIEILDSTDLTK 580 Query: 464 ITSRFERS-VLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKKNEE 513 +ER +L L S K A LG+S T + K+++YG+ + +EE Sbjct: 581 EVENWERQRILQVLREVRGSKTKAAALLGISRTTLWRKIKDYGIDRYDDEE 631 >UniRef50_Q0AWA7 Acetoin operon expression regulatory protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWA7_SYNWW Length = 671 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 138/489 (28%), Positives = 234/489 (47%), Gaps = 30/489 (6%) Query: 44 AELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVD 103 + + ++A + I+ ++ L + + + ++ +DM+ + Sbjct: 187 EKTHLHTLGMVVAAVEAISDQLRIQQKNR-ELLLLSNRLGYIYNTVSDGIMVIDMQGIIT 245 Query: 104 MANPASCQLFGQKLDRLRNHTAAQLI-NGFNFLRWLESEPQDSHNEHVVINGQNF--LME 160 NPA ++ GQ ++ +L G L+S S++E + G+ L+ Sbjct: 246 QINPAVERILGQNSRKIMGIPVKELFEPGQRVEEMLDSGRDFSYSELTLGIGEAVQCLVS 305 Query: 161 ITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVA-AQDVSAFSQIVAVSPKMKHVVEQ 219 + ++Q + G V+ + + + + AQ FS I+ S ++ VV Sbjct: 306 GKAIM----DEQGKVNGGVIFINPINHIKSLVNRFSGAQASLHFSDIIGQSQELSRVVRI 361 Query: 220 AQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA 279 A A + +L+ G++GTGK++FA A H AS R P++A+NC +IP + + SELFG+ Sbjct: 362 ASLAASSESNILLEGESGTGKEVFAQAIHNASSRRDAPFIAVNCGAIPRELLGSELFGYV 421 Query: 280 PE--------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHV 331 G+ G FE A+GG++ LDEIGEM Q LLR L + T R+G D + V Sbjct: 422 DGAFTGARRGGRPGKFELASGGTIFLDEIGEMPLGKQVSLLRVLQERTVTRIGGDKVIPV 481 Query: 332 DVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADE 391 DVRVICA+ + L E V+KG FR DL+YRLNV+ + LPPLR +DI L F+ + + Sbjct: 482 DVRVICASNRKLHEEVEKGNFRRDLFYRLNVIAITLPPLRQRKEDIPLLFHHFLQDISQK 541 Query: 392 QGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVA 451 GV P++ ++ L Y WPGNVR+L+N + R + + + + + A + Sbjct: 542 LGVKTPQVETEVIHSLQDYDWPGNVRELQNVVERMVNIAEESRISREHLPQEISHPAARS 601 Query: 452 VGEDAMEGSLDEITSRFERS-------------VLTQLYRNYPSTRKLAKRLGVSHTAIA 498 + E A ++ ER ++ L + + ++AK LGVS I Sbjct: 602 LKELANCEDSQLLSLSTERRKRKEMEQEREQEEIMALLVLHGGNVSQVAKSLGVSRNTIY 661 Query: 499 NKLREYGLS 507 K+++Y + Sbjct: 662 RKIKQYRIK 670 >UniRef50_A5I3D4 Putative sigma-54 dependent transcriptional regulator n=10 Tax=Clostridium RepID=A5I3D4_CLOBH Length = 591 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 135/503 (26%), Positives = 254/503 (50%), Gaps = 28/503 (5%) Query: 20 LLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRR--IAGVTDVRTVPWMPSER 77 ++ I + GI I + LN EF+S + + + + + T+ + + Sbjct: 103 IMEDEVIGVIGINIFNEKQ--LNMISKEFDSMITFLNRLSTLLVGNIIYYDTIKKLQIQT 160 Query: 78 EHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRW 137 E + ++++L ++ VD + N +L K L N I+ FN Sbjct: 161 EET--NHIIDSLSHGIMCVDNNGILKYINHKGKKLLDIKEKSLVNTNIKDTISNFNIK-- 216 Query: 138 LESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAA 197 L S+ + ++FL++ +P+ + E ++ + + + + A+ Sbjct: 217 LLSKEYKGKRISIHGKNESFLIKSSPIIFKGE----RVSNIIEFNKKIDEVQAAYKLFAS 272 Query: 198 QDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKP 257 + F I+ S +K+V A+ +A + +L+ G++GTGK+LFA A H S R P Sbjct: 273 SKIIKFEDIMGSSNNIKNVKLIAKNIAKTDSTVLLRGESGTGKELFARAIHFESQRCDAP 332 Query: 258 YLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQA 309 ++A+NCASIP++ +ESE FG+ EG+ G FE ANGG++ LDEIG++ +Q Sbjct: 333 FIAVNCASIPDNLLESEFFGYEGGAFSGAKREGQMGKFELANGGTIFLDEIGDLPLHLQP 392 Query: 310 KLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPP 369 K+LR L + +F ++G E+ VDVR+I AT ++L +V+ G FR+DLYYRLNV+ + LP Sbjct: 393 KILRVLQEQSFTKIGGKEEICVDVRIIAATNRDLEAMVKHGQFRQDLYYRLNVIPIYLPS 452 Query: 370 LRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQ 429 L+D +DI+ L+E + +F + + +L+ ++ +Y+WPGN+R+L+N I + Sbjct: 453 LKDRGEDIILLSEYLMDKFCERSNLKIKQLSKEVKDSFKKYSWPGNIRELENVIEYIVNT 512 Query: 430 LDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYP----STRK 485 + + + + ++ ++ SL + ++E+++L + Y + Sbjct: 513 TKENIIYNEHLP----KSFKISKEDEKSNKSLQDRLYKYEKNLLISMMEEYGEDGKGKER 568 Query: 486 LAKRLGVSHTAIANKLREYGLSQ 508 +AK L ++ + + KL +Y L + Sbjct: 569 IAKELDINLSTLYRKLNKYNLQK 591 >UniRef50_A7GG75 Sensory box sigma-54 dependent transcriptional regulator n=10 Tax=Clostridium RepID=A7GG75_CLOBL Length = 584 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 132/495 (26%), Positives = 232/495 (46%), Gaps = 33/495 (6%) Query: 44 AELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSA-----------LLEALPEP 92 + + +I R+ V + + + + + + L +LE + E Sbjct: 90 KSIISARNIMVKNKIERLPIVHNRKIIGIVHLDDLNNELYTNVEELYALQDRILENMHEA 149 Query: 93 VLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVI 152 V + K V N +S L+G K + L+ L++ + ++ + Sbjct: 150 VCITNNKGVVIYWNKSSEDLYGVKRQEIIGKYLGSFFPNALILKVLKNPRKITNVNNEPS 209 Query: 153 NGQNFLMEITPVYLQDENDQHV------------LTGAVVMLRSTIRMGRQLQNVAAQDV 200 G+ ++ P++ V L+ ++ + + Sbjct: 210 PGKTVILSAVPIFNSKNKLIAVASTDRDITEVISLSKELMQEKKKVEFFESAYKKEIASN 269 Query: 201 SAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLA 260 +FS I+ S K+ + A+K+A SA +LITG++GTGK++FA A H+AS R ++A Sbjct: 270 YSFSSIIGKSQKIIENIAIAKKVAPTSASVLITGESGTGKEVFAKAIHKASGR-TGNFVA 328 Query: 261 LNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLL 312 +NC++IPE+ ESELFG+ EGK G FE AN G++ LDEIG+M MQAKLL Sbjct: 329 INCSAIPENLFESELFGYVGGTFTGSLKEGKIGKFEFANNGTLFLDEIGDMPLSMQAKLL 388 Query: 313 RFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRD 372 R L DG R+G V+ R++ AT ++L ++++ FREDL+YR V+ + LPPLR+ Sbjct: 389 RVLQDGVVYRIGSQKGTKVNCRILAATNRDLQSMIKENTFREDLFYRFAVVHIELPPLRE 448 Query: 373 CPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDG 432 DI +LF+ + ++++G+ + ++ +L Y W GN+RQLKN + R + Sbjct: 449 RRDDIKDFIDLFINQISEKEGIKINTIDKEVYDILCSYKWEGNIRQLKNVVERMVVLSTN 508 Query: 433 YELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYR-NYPSTRKLAKRLG 491 E+ + GE L+E+ E+ ++ ++ + +K A+ L Sbjct: 509 GEVTISSVPNHIVQDVEEIEGESHHRYDLNEVVKNTEKKIIKEVMEITKGNKKKAAEILN 568 Query: 492 VSHTAIANKLREYGL 506 + + + KL +Y L Sbjct: 569 IKRSTLYYKLNQYDL 583 >UniRef50_A3ESE7 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Leptospirillum sp. Group II RepID=A3ESE7_9BACT Length = 473 Score = 527 bits (1360), Expect = e-148, Method: Composition-based stats. Identities = 125/441 (28%), Positives = 227/441 (51%), Gaps = 21/441 (4%) Query: 83 SALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFN------FLR 136 A+L++L E V+++ + K+ N A+ ++ + D +++N + Sbjct: 38 QAILDSLEEGVVAIGLDKKILYMNRAAREILKNREDSPTPSDCRKVVNSSECQARCVLAK 97 Query: 137 WLESEPQDSHNEHVVIN--GQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQN 194 +E+ + E +++ G+ ++ + L+D + G V + ++ + Sbjct: 98 TVETGEPIRNMEISLVDALGRRRVLRLNTALLKD--SSGKVFGGVEIFHDISQIVALKEE 155 Query: 195 VAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRA 254 + + +F +I+ S KM+ + + +A + +LI G++GTGK+L A+A H+ SPR Sbjct: 156 LKGR--YSFGRIIGRSEKMQELFDLLPVIAQSKSTVLIEGESGTGKELVAHALHENSPRR 213 Query: 255 GKPYLALNCASIPEDAVESELFGHAPEG-------KKGFFEQANGGSVLLDEIGEMSPRM 307 P++ LNCA++ E +ESELFGH + G FE A+GG++ LDEIGE+SP M Sbjct: 214 EGPFVKLNCAALSEGVLESELFGHVKGAFTGAVQSRPGRFELASGGTLFLDEIGEISPSM 273 Query: 308 QAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNL 367 Q KLLR L + F RVG V VDVRVI AT ++L + +++G FR+DLYYRL V+ + L Sbjct: 274 QVKLLRVLQEEEFERVGGTKTVKVDVRVIAATNRDLKQAMEEGSFRKDLYYRLRVIPVTL 333 Query: 368 PPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRAL 427 PPLR+ D+ L + F+ R+ E G L ++ VL Y +PGN+R+L+N I A Sbjct: 334 PPLRERQGDLPLLIQSFIERYNAELGKNIQGLTSEAMKVLLNYHYPGNIRELQNIIEHAA 393 Query: 428 TQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLY-RNYPSTRKL 486 + + + + A + + + + E+ ++ + + ++ Sbjct: 394 LLCNDSRIDLRHLPGDLLPAQSQSSFLELAMME-ENPVRYVEKELIRLAMAESGGNVSEV 452 Query: 487 AKRLGVSHTAIANKLREYGLS 507 A++L + + + +L+E L+ Sbjct: 453 ARKLSMGRSTLWRRLKEMKLA 473 >UniRef50_A6CKR1 Putative uncharacterized protein n=1 Tax=Bacillus sp. SG-1 RepID=A6CKR1_9BACI Length = 685 Score = 527 bits (1360), Expect = e-148, Method: Composition-based stats. Identities = 143/492 (29%), Positives = 243/492 (49%), Gaps = 32/492 (6%) Query: 46 LEFESFSSLMAEIRRIAGVTDVRTVPWMPSE-----REHLALSALLEALPEPVLSVDMKS 100 L ++ ++ + +I D+ + M E + L + L+ + +L D + Sbjct: 200 LHMSAYETVTHKQGKIILFQDISEIEKMAEELQTIKKLKLTIETALDHAYDGILMTDEHN 259 Query: 101 KVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLME 160 + M +P +LF + + ++ + ++E + + H NG +++ Sbjct: 260 VIKMVSPPLLELFNLDKKDVLHKKVDIVMPQLKLDQVFKTEAAEVSDLH-ERNGIKYIVH 318 Query: 161 ITPVYLQDE-------------NDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIV 207 P+ + + N+ L + S Q + + I+ Sbjct: 319 RIPIKKEGKVIGAIGKVMFRQLNEVSALFKRLQKAESKASFYHQQLQKSETARFTWDHIL 378 Query: 208 AVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIP 267 + P M + + A K A + +LI G++GTGK+LFA+A H +S R+ ++ +NCA+IP Sbjct: 379 SKHPYMDKLKKSAAKAAKGRSTVLIRGESGTGKELFAHAIHNSSARSDGKFVIVNCAAIP 438 Query: 268 EDAVESELFGHAPE--------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGT 319 ED +ESE FG+ GK G F+ ANGG++ LDEIG+MS +QAKLLR L + Sbjct: 439 EDLLESEFFGYDEGAFTGAKQRGKVGKFDLANGGTLFLDEIGDMSVALQAKLLRVLQERE 498 Query: 320 FRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMP 379 F RVG + + VDVR+I AT ++L ++V++G FREDLYYRLNV++L +PPLR+ D+ Sbjct: 499 FYRVGGNSRIKVDVRIIAATNRDLEKMVKEGEFREDLYYRLNVISLKIPPLRERIHDVEY 558 Query: 380 LTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQD 439 LT + G ++ L +Y WPGNVR+LKN + RA+T + ++ +D Sbjct: 559 LTSQLMIELNSMLGTSITGISPKAKESLLQYNWPGNVRELKNILERAMTFAEHGNIQVED 618 Query: 440 ILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIAN 499 + PDY + + + G ++ R LTQ + + A+ LG+S + + Sbjct: 619 L--PDYLIDQLTIPKKEKNGLAEDAELEAIRKALTQA---NGNKAQAARLLGISRSGLYE 673 Query: 500 KLREYGLSQKKN 511 KL++Y LS K + Sbjct: 674 KLKKYELSAKGS 685 Score = 53.8 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 22/207 (10%), Positives = 58/207 (28%), Gaps = 19/207 (9%) Query: 29 RGIEIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTV---PWMPSEREHLALSAL 85 + I ID + ++ E ++ G+ + + L + Sbjct: 77 QTIRIDTPYHEIEQIVKTSKAGTGVVLDEHGKVIGLLTKTEMVMTLLKSASTLKDQLETI 136 Query: 86 LEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDS 145 L VL D +V AN + ++ G ++ + + + ++ Sbjct: 137 LTHSNIGVLMTDEHLRVIYANASFSKITGHPINSIYSKDLNETFPSLPMETHGPYHSEEY 196 Query: 146 HNE-HVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFS 204 + H+ + + QD ++ + + + + A+ Sbjct: 197 KSILHMSAYETVTHKQGKIILFQDISEIEKMA------EELQTIKKLKLTIETALDHAYD 250 Query: 205 QIVAV---------SPKMKHVVEQAQK 222 I+ SP + + +K Sbjct: 251 GILMTDEHNVIKMVSPPLLELFNLDKK 277 >UniRef50_A5D511 Transcriptional regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D511_PELTS Length = 478 Score = 527 bits (1359), Expect = e-148, Method: Composition-based stats. Identities = 143/470 (30%), Positives = 240/470 (51%), Gaps = 35/470 (7%) Query: 74 PSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFN 133 S+ L +L++ PE + VD +++V N A KL+ + +I Sbjct: 8 SSDEMVDFLIKVLDSDPECFVFVDSEARVIWLNKAYQSYLNVKLEEAQGKPVVDVIPNTR 67 Query: 134 FLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHV----------LTGAVVMLR 183 +++ + + ING+ ++ P++ + + V L+ Sbjct: 68 LQVVVKTGIPEL-GKVQNINGRRAIVNRIPLFKDGKIIVAIGKVLFKTKKEFAELVSKLK 126 Query: 184 STIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLF 243 + ++ N F I+ SP + HV + AQK+A + ++I G++G+GK+L Sbjct: 127 EEVDCYKRELNEIYTSKWKFEDIITCSPNLIHVKDLAQKVAPVDVNVMILGESGSGKELL 186 Query: 244 AYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGFFEQANGGSV 295 A++ H AS R+ KP++ +NCA+IPE+ +ESELFG+ P GK G E AN G+V Sbjct: 187 AHSIHSASTRSSKPFVCINCAAIPENIMESELFGYEPGAFTNAKSNGKLGKLEIANNGTV 246 Query: 296 LLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFRED 355 LDEIG+M P MQAKLLRFL +G +VG V V+VRVICAT +N+ ++V+ G+FR D Sbjct: 247 FLDEIGDMPPFMQAKLLRFLQEGELEKVGSVKPVSVNVRVICATNRNIQKMVEDGIFRAD 306 Query: 356 LYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGN 415 LYYRL+ + L +PPLR+ P+DI L + F+ ++ +P K+ + +L Y WPGN Sbjct: 307 LYYRLSSIILKIPPLRERPEDIELLCDHFLKSITEKWAIPLKKIDKEALEILKNYYWPGN 366 Query: 416 VRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAV--GEDAMEGSL------------ 461 VR+L++ + DG ++ + + + + A+ + SL Sbjct: 367 VRELQHLLETLCCITDGNIIKAKALPSYLFGQSDSAMLKNNELRRISLSNINSDGNNKYI 426 Query: 462 -DEITSRFERSVLTQLYR-NYPSTRKLAKRLGVSHTAIANKLREYGLSQK 509 ++ + E+ +L ++ R + RK A+ LG+ T + KLR+Y + K Sbjct: 427 CSDVINSKEKELLEEVLRNTGGNKRKAAEMLGIHRTTLYYKLRKYNMQYK 476 >UniRef50_B8FD14 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfobacteraceae RepID=B8FD14_DESAA Length = 470 Score = 527 bits (1358), Expect = e-148, Method: Composition-based stats. Identities = 132/469 (28%), Positives = 224/469 (47%), Gaps = 25/469 (5%) Query: 66 DVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTA 125 D + + E++ A+ +++ L D K + N G + Sbjct: 2 DDKDLRIEALEKDLEMHRAIFDSIFNGALVTDEKGIITHFNKPYGDFLGVDPESQIGRHC 61 Query: 126 AQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPV-------------YLQDENDQ 172 + + + + + H +I G+ +++ P+ +D D Sbjct: 62 TESVVNSRMHIVARTGKPEINQSHNII-GKKMVVQRIPIKRGGRVIAVFGQVLFKDVKDL 120 Query: 173 HVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLI 232 L + +L S +++ + I+ VS +K + E+A + A P+LI Sbjct: 121 SRLASELKVLESKVKLYEAELLNLRSTRYTLNSIIGVSGPIKELKEEALRAAATHYPVLI 180 Query: 233 TGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKK 284 G++GTGK+LFA A H AS R P++ +NCA+IP+D +E+ELFG+ GK Sbjct: 181 CGESGTGKELFAQAIHHASNRKLFPFVRINCAAIPKDLLEAELFGYEKGAFTGARSDGKP 240 Query: 285 GFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLV 344 G FE A+ G++ LDE+G++ MQ KLLR L D F RVG + + D+R+I AT ++L Sbjct: 241 GKFELAHQGTLFLDEVGDLPLEMQPKLLRALEDREFERVGGNKIIRSDLRIIAATNQDLD 300 Query: 345 ELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLN 404 +++ G FR+DL+YRLNV+ +N+PPLR DI+P E + + A E +P + Sbjct: 301 QMMADGRFRKDLFYRLNVIPINIPPLRKRKNDIIPSAEYILRQLAAEANLPDISMDKSAQ 360 Query: 405 TVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEI 464 L + WPGNVR+L N + R L+ L+G + D+ Y + SL + Sbjct: 361 AALRNHQWPGNVRELSNVLERTLSALNGRTIGLSDLPF--YLHQDRKPLSNGGSSSLKAV 418 Query: 465 TSRFERSVL-TQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKKNE 512 +R ER + + L + + K A+ LG+ T + K+++Y + +K Sbjct: 419 QARIERESICSALEQTGYNKVKAAELLGIHRTLLYKKIKKYAIPLEKEP 467 >UniRef50_Q3A203 Two component signal transduction response regulator n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A203_PELCD Length = 575 Score = 527 bits (1358), Expect = e-148, Method: Composition-based stats. Identities = 137/449 (30%), Positives = 230/449 (51%), Gaps = 30/449 (6%) Query: 78 EHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQL-INGFNFLR 136 L+A+ E++ + +LSVD V N A+ +L G D L + R Sbjct: 136 TRTNLAAIFESVKDGLLSVDASGCVTDFNQAASRLCGWSKDDR-GEKIDALSMPCAGTCR 194 Query: 137 WLESEP---------QDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIR 187 L + + EH+ GQ + +P+ +N + + GAV+++R R Sbjct: 195 DLLTRTLEEGKSMELKRMECEHLERAGQVVSLSTSPL----QNKEGDVFGAVMVVRDETR 250 Query: 188 MGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYAC 247 + +++ + +F +++A S KM+ V + LA + + +LI G++GTGK+L A A Sbjct: 251 LDDLERSLNKRQ--SFHRMIATSSKMQQVFGLIETLAQVPSTVLILGESGTGKELVAEAL 308 Query: 248 HQASPRAGKPYLALNCASIPEDAVESELFGHAPE-------GKKGFFEQANGGSVLLDEI 300 H + PR +P + +NCA++ + +ESELFGH G F++A+GG++ LDEI Sbjct: 309 HLSGPRKNRPLVKVNCAALSDTLLESELFGHVKGSFTGAVKDHVGRFQKADGGTIFLDEI 368 Query: 301 GEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRL 360 G++SPRMQ +LLR L + R+G+ V VDVR++ AT ++L E V+ G FR+DLYYRL Sbjct: 369 GDISPRMQLRLLRVLQEKEVERIGDSTPVKVDVRIVAATNQDLEEKVRSGEFRQDLYYRL 428 Query: 361 NVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLK 420 V+TL LPPLR+ +DI P+ + F+ R+ + G + ++ + Y WPGNVRQL+ Sbjct: 429 KVITLALPPLRERKEDIPPMVDHFIQRYNEVLGRNLQGVDQEVMRAMQAYDWPGNVRQLE 488 Query: 421 NAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNY 480 +AI L + GE A+ + + ++ +L L + Sbjct: 489 HAIEHILIHCTEPLASLAHVPEEILQ------GEQAVGKYCADSEEQEQQQILAALDKTD 542 Query: 481 PSTRKLAKRLGVSHTAIANKLREYGLSQK 509 + K A+ LG+ + K+ ++GL + Sbjct: 543 WNKAKAARLLGIDRKTLYRKIEKFGLVEP 571 >UniRef50_B0K2Z9 Sigma54 specific transcriptional regulator, Fis family n=5 Tax=Thermoanaerobacter RepID=B0K2Z9_THEPX Length = 575 Score = 527 bits (1358), Expect = e-148, Method: Composition-based stats. Identities = 136/527 (25%), Positives = 241/527 (45%), Gaps = 36/527 (6%) Query: 6 FCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVT 65 +RL +T L + IDL G ++L + + ++ I + Sbjct: 54 NTAERLAIT-SFLTVKENEDIDLESY----NGEVFLVTDD--YNEIKGVVTNREIIFFLL 106 Query: 66 DVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTA 125 D + L A + + D + ++ +++G K + L Sbjct: 107 DNLKSIKAEFDLVKTDLDAFMACSDDLACITDGSGLKVRISSSAEKIYGLKPEDLIGKNV 166 Query: 126 AQLINGF----NFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLT----- 176 ++L + + E + G+ L+ TP + +D N + +++ Sbjct: 167 SELEKNGMYFPSATKIAIEEKKKVTVIQKTKTGRKLLVTATPFFDKDNNIKRIVSISKDI 226 Query: 177 -------GAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAP 229 + + ++ + + S+I+ S +M+ ++E K+A + Sbjct: 227 TDEEKLKTELKQTKELLQKYEEELSSLRIAHLKNSEIIYRSKQMERLIELVNKVAPTEST 286 Query: 230 LLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE-------- 281 +LI G+TG GK++ A H S R+ P++ +NC +IPE+ +E+ELFG+ Sbjct: 287 ILIYGETGVGKEVLAKYIHNIS-RSEGPFIKINCGAIPENLLEAELFGYEKGAFTGAKSE 345 Query: 282 GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQK 341 GK G E A+ G++LLDEI E+ +Q KLLR L + F RVG + VDVR+I A+ K Sbjct: 346 GKPGLIEVADKGTLLLDEISELPLSLQVKLLRVLQEKEFIRVGGIKPIKVDVRIIAASNK 405 Query: 342 NLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAA 401 +L ELV++G FR+DLYYRLNV+ + +PPLR+ QDI L F+ + ++ G +L Sbjct: 406 DLKELVKEGKFRQDLYYRLNVVPVTIPPLRERVQDIPILAYHFLNMYNEKYGHS-KQLTN 464 Query: 402 DLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDIL---LPDYDAATVAVGEDAME 458 ++ + +Y WPGNVR+L+N I R + + ++ +D+ L + + Sbjct: 465 EVMEIFMKYPWPGNVRELENVIERIVIISENDQITKKDLPGELLNQEETNHSFGVHVSRL 524 Query: 459 GSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYG 505 L E ++ E ++ Q S+ K A+ LGV + I KL++Y Sbjct: 525 MPLKEASALVEYQLIKQAIEECGSSYKAAEVLGVDQSTIIRKLKKYE 571 >UniRef50_Q9K633 Transcriptional regulator n=2 Tax=Bacillus RepID=Q9K633_BACHD Length = 559 Score = 526 bits (1357), Expect = e-148, Method: Composition-based stats. Identities = 122/451 (27%), Positives = 205/451 (45%), Gaps = 29/451 (6%) Query: 80 LALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLE 139 L A++E + ++ VD + + + G + ++I + Sbjct: 115 ELLEAMMEFAFDGLVMVDREGYITALSTDYASFLGVNQEEAIGKHVTEVIENTRMHIVAK 174 Query: 140 SEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHV-------------LTGAVVMLRSTI 186 S + E I G + P+ + V L V + + Sbjct: 175 SGKTEVA-ELQKIRGDYMIATRVPIIKNGQVTGAVGKVLFKNVGGFNSLYKRVNSMEKEL 233 Query: 187 RMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYA 246 + + + FS I+ SP + ++A+K A + +L+ G++GTGK+LFA++ Sbjct: 234 KRYKGEMKELNKAAYQFSNIIGSSPLLVQAKKEAKKAAKSDSNVLLLGESGTGKELFAHS 293 Query: 247 CHQASPRAGKPYLALNCASIPEDAVESELFGHAPEGKKG--------FFEQANGGSVLLD 298 H S RA ++ +NCA+IP D +ESELFG+ G FE A+GG++ LD Sbjct: 294 IHNESRRAFGSFVKVNCAAIPADLLESELFGYEEGSFTGAIKGGKKGKFEAADGGTIFLD 353 Query: 299 EIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYY 358 EIGE+ MQ K LR L + ++G VDVRVI AT ++L ++VQ G FR DLYY Sbjct: 354 EIGELPLHMQVKFLRVLQEKEVEKIGSSTGKSVDVRVIAATNRDLEKMVQAGEFRLDLYY 413 Query: 359 RLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQ 418 RLNV+ + +P LRD DI L F+ ++ + + + + L +Y WPGN+R+ Sbjct: 414 RLNVMPITVPSLRDRKGDIPRLARYFLEKYRERMNMVARDIHPEAILALEQYEWPGNIRE 473 Query: 419 LKNAIYRALTQLDGY-ELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLY 477 L+N I RA+ + +R + V + L+++ E+ + Sbjct: 474 LENVIERAVNVAENEKMIRRCHLPEKI-----TGVQFRSGVRPLEQVMEETEKEAILNAL 528 Query: 478 R-NYPSTRKLAKRLGVSHTAIANKLREYGLS 507 R + K A L +S T++ K++++ LS Sbjct: 529 RVTNNNRTKAANLLQISRTSLYEKMKKHRLS 559 Score = 51.1 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 43/130 (33%), Gaps = 7/130 (5%) Query: 80 LALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLE 139 L L +L+ LP V+ V V N +L + +L++ R + Sbjct: 7 LKLEKVLDQLPVGVMVV-ADGVVTYCNEPVRKLLTMTSFHVIGRNVTELLDPTLLERIM- 64 Query: 140 SEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMG-RQLQNVAAQ 198 ++ + G+ L+ + L + L + + Q++ + A Sbjct: 65 ----PGAKVNITVKGKRLLVWKDQIMLSGDEVDLYLLTLEGETDEFLHVNDHQVELLEAM 120 Query: 199 DVSAFSQIVA 208 AF +V Sbjct: 121 MEFAFDGLVM 130 >UniRef50_A6TL20 Sigma54 specific transcriptional regulator, Fis family n=4 Tax=Clostridiaceae RepID=A6TL20_ALKMQ Length = 587 Score = 526 bits (1356), Expect = e-148, Method: Composition-based stats. Identities = 132/473 (27%), Positives = 224/473 (47%), Gaps = 25/473 (5%) Query: 60 RIAGVTDVRTVP---WMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQK 116 + G+ + + + + H AL ++ L E V VD V + + + +L+ K Sbjct: 114 EVIGIVRTKDILDKVYSKIDEMHEALGHIIHNLHEGVCVVDKDGIVMLWSDTAEKLYRVK 173 Query: 117 LDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDE------- 169 L L L+SE + H + ++ P+Y+ E Sbjct: 174 SKELLGKKLESFFPTALLLTVLKSEKPIRNVYHSPRDKSYAIISAVPIYINGELVAAVST 233 Query: 170 ----NDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAM 225 + L+ + + + + N ++ +F +++ S +K +++A+++A Sbjct: 234 DRDITETANLSVELETTKEKLDYLQMEVNKINENQYSFDKVLGKSQVIKEKIDKAKQVAS 293 Query: 226 LSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE---- 281 ++ +LI G++GTGK++FA A HQ S R P++A+NC++IPE+ ESE+FG+ Sbjct: 294 TNSSVLIGGESGTGKEVFARAIHQVSGRK-GPFVAINCSAIPENLFESEIFGYEGGAFTG 352 Query: 282 ----GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVIC 337 GK G E A G++ LDEIG+M MQAKLLR L + RVG + V VDVR+I Sbjct: 353 ALNKGKIGKVELAENGTLFLDEIGDMPLYMQAKLLRVLQEKQIVRVGGEKPVDVDVRIIS 412 Query: 338 ATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRP 397 AT +NL +V +G FREDL+YRLNV+ + LP L+ +DI F+A F E + P Sbjct: 413 ATHRNLKTMVMEGKFREDLFYRLNVVNIQLPSLKYRVEDIHIFLNQFMAEFCKENNLSIP 472 Query: 398 KLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAM 457 K++ ++ L Y WPGN+R+LKN + + E+ I + + D Sbjct: 473 KISMEVFHTLMNYDWPGNIRELKNTVEHLVVFSKNGEIIMSSIPEHILEKIGDSQYVDTP 532 Query: 458 EG-SLDEITSRFERSVLTQLYR-NYPSTRKLAKRLGVSHTAIANKLREYGLSQ 508 E L E E + + + + AK L + + + K++ Y + + Sbjct: 533 ENYDLQENIKHIETVTIRKAMEVVNGNKMQAAKLLNIPRSTLYYKIKFYNIKE 585 >UniRef50_UPI00016C5695 DNA-binding protein Fis / transcriptional regulator, Fis family n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5695 Length = 635 Score = 525 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 157/478 (32%), Positives = 225/478 (47%), Gaps = 31/478 (6%) Query: 58 IRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKL 117 R A D + M L E P + DM+S+ AN + ++ G K Sbjct: 162 AARAAAELDRLRMDRM-LRDSEERFRDLFEEAPVAYVHEDMESRFIRANRTALRVLGLKP 220 Query: 118 DRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLM----EITPVYLQ------ 167 + L+ + L E S G + + P+++Q Sbjct: 221 EEAVGTVGMSLVPDTPDAQRLVKEAFASIGRGTDTGGVVLELRRKDDGRPIWIQWWSRPD 280 Query: 168 --DENDQHV---LTGAVVMLRSTIRMGRQL--QNVAAQDVSAFSQIVAVSPKMKHVVEQA 220 + + V +T V+M R R+ +Q + F +IV SP + V+++ Sbjct: 281 RGGQFTRTVFIDVTERVLMEREQARLQQQNVYLQEELKAAHNFDEIVGQSPALVSVLQRV 340 Query: 221 QKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAP 280 K+A + +LITG+TGTGK+L A A H ASPR KP + LNCA++P VESELFGH Sbjct: 341 SKVAGTDSTVLITGETGTGKELVARAVHSASPRKAKPLIKLNCAALPTHLVESELFGHEK 400 Query: 281 E-------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDV 333 K G FE A+GG++ LDE+GE+S QAKLLR L + F RVG V VDV Sbjct: 401 GAFTGAVARKPGRFELADGGTLFLDEVGELSLEAQAKLLRVLQEREFERVGGTAPVKVDV 460 Query: 334 RVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQG 393 RVI AT ++L +LV++G FR DL YRLNV + LP LR+ P DI L FV +FA G Sbjct: 461 RVIAATNRDLAQLVKEGAFRADLLYRLNVFPVRLPALRERPGDIPLLVRFFVTKFAGRLG 520 Query: 394 VPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYE--LRPQDILLPDYDAATVA 451 +++ D L Y WPGN+R+L+N I RA DG E + P + A Sbjct: 521 KRIERVSGDTLDALVGYDWPGNIRELENVIERAAILSDGPELVIDPDVLP----VTRGGA 576 Query: 452 VGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQK 509 A SL + + RSVL Q A LG+ + +++++ G+ + Sbjct: 577 APAGAGGQSLVAVEADHIRSVLAQTGWVIEGPNGAATVLGLHPNTLRSRMKKLGILRP 634 >UniRef50_B9M8I7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Geobacter sp. FRC-32 RepID=B9M8I7_GEOSF Length = 678 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 123/473 (26%), Positives = 214/473 (45%), Gaps = 26/473 (5%) Query: 43 FAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKV 102 + ++ + ++ ++ + GV + + L +LE E V +D + Sbjct: 215 YQNMKNKGVIFVIQDMTDVEGV----AHELETVKELKMTLETVLEVAYEGVAVLDEAGMI 270 Query: 103 DMANPASCQLFGQKLDRLRNHTAAQLIN---GFNFLRWLE--SEPQDSHNEHVVINGQNF 157 + N C G+ D + + I L LE ++P + G Sbjct: 271 TLVNARFCNKIGKPKDNIIGENINRFIPLSHNQMPLSVLEINAKPCVVSTLPITKEGNTK 330 Query: 158 LMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVV 217 + +D ++ + + + + + IV ++ + Sbjct: 331 GFVVK--IYEDLDNLADIVQQINRINMQLNYYKNELYKVNGTSYTVGSIVCRDERIATLK 388 Query: 218 EQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFG 277 Q ++ ++ +LITG++GTGK+LFA++ H AS R +P++ +NC++IP + E+ELFG Sbjct: 389 SQVLQVGRSNSTVLITGESGTGKELFAHSIHNASNRRKEPFIKVNCSAIPGELAEAELFG 448 Query: 278 HAPE--------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEV 329 + GK G FE A+ G++ LDEIG+M +Q+KLLR + D RVG Sbjct: 449 YEDGAFTGARKQGKPGKFELADCGTIFLDEIGDMPLALQSKLLRVIQDKEIERVGGVKAR 508 Query: 330 HVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFA 389 VDVR+I AT ++L +V +G FREDLY+R+NV+ L +PPLRD +DI L + F+ ++ Sbjct: 509 KVDVRIIAATNRDLKRMVTEGTFREDLYFRINVVELKIPPLRDRRKDIPLLADTFIRKYN 568 Query: 390 DEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAAT 449 ++ G + LTRY WPGN+R+L+N I R L + + QD+ Sbjct: 569 NQLGRRVEGITEAALEALTRYDWPGNIRELENIIERMLNYRESGLIELQDLPEEIVGRPG 628 Query: 450 VAVGEDAMEGSLDEITSRFERSVLTQLY-RNYPSTRKLAKRLGVSHTAIANKL 501 + + + E + + K A+ LG+S + + KL Sbjct: 629 GMAAKAT------QTLAVMEMETIQAALAEAGGNKSKAARLLGISRSKLYEKL 675 Score = 45.3 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 40/119 (33%), Gaps = 7/119 (5%) Query: 80 LALSALLEALPEPVLSVDMKSKVDMANPASCQLF-GQKLDRLRNHTAAQLINGFNFLRWL 138 LS ++E +P +L+ V MAN + + G + R +L F+ + Sbjct: 133 RELSGVIENVPAGILATSDTGMVTMANQYAKNILGGVQSGRYIGDYLQELERDFSPVI-- 190 Query: 139 ESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAA 197 + N + P+Y +N + + + + +L+ V Sbjct: 191 --SGNWMLPRKIEHNALKLIATAVPIYQNMKNKG--VIFVIQDMTDVEGVAHELETVKE 245 >UniRef50_Q81CD5 Sigma-54-dependent transcriptional activator n=3 Tax=Bacillaceae RepID=Q81CD5_BACCR Length = 469 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 132/453 (29%), Positives = 221/453 (48%), Gaps = 28/453 (6%) Query: 83 SALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLI--NGFNFLRWLES 140 +++ V +D K V + ++F + + + L+ L Sbjct: 17 DTVIQTTDSSVTVIDSKEYVRTWTDGAEKIFSVNHNEIIGQPITRFFDYKDLEILQSLHD 76 Query: 141 EPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGA-----------VVMLRSTIRMG 189 H L+ PVY DE V++ + + + Sbjct: 77 GKSIVAQFHQPRPDLFVLINSNPVYCNDEIIGAVVSETDVTNQVALNEKLFNMSHEMHRL 136 Query: 190 RQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQ 249 Q + F + SP ++ ++ A+K+ + + +LI G++G GK++FA A H+ Sbjct: 137 EQEVAKYKDESDPFLAMNGKSPVIQRTIQLARKVCSVKSTVLILGESGVGKEVFAKAIHE 196 Query: 250 ASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGFFEQANGGSVLLDEIG 301 AS A P++++NC +IPE ESELFG+ GKKG E A GG++ LDEIG Sbjct: 197 ASEAAKAPFISINCGAIPEALFESELFGYERGAFSGANSKGKKGKIELAQGGTLFLDEIG 256 Query: 302 EMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLN 361 EM MQ KLLR L + + RVG + E+++D R+I AT ++L E ++KG FREDLYYRLN Sbjct: 257 EMPLDMQVKLLRVLQERKYYRVGGEKEINIDFRIIAATNRDLQEEMRKGTFREDLYYRLN 316 Query: 362 VLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKN 421 V++L++PPLR+ +DI+ LT F+ F+ P L + + L Y WPGN+R+L+N Sbjct: 317 VVSLHIPPLRERREDIIELTYSFLNDFSINYNRPIRDLPSSIMHELLHYNWPGNIRELRN 376 Query: 422 AIYRALTQLDGYELRPQDIL------LPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQ 475 + R + ++ + + L ++ A ++ + + SL E E+ V+ + Sbjct: 377 VVERLVVFATDGIIKQEYLPFHTTETLDNHTAHSLLLSNNNTILSLQEEMDEHEKKVIER 436 Query: 476 LYR-NYPSTRKLAKRLGVSHTAIANKLREYGLS 507 R + + AK+LGV+ + N+L++ GL Sbjct: 437 ALRILNGNKLECAKQLGVTRATLYNRLKKLGLQ 469 >UniRef50_Q9KBP6 Transcriptional regulator (Sigma-L-dependent) n=1 Tax=Bacillus halodurans RepID=Q9KBP6_BACHD Length = 555 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 134/481 (27%), Positives = 242/481 (50%), Gaps = 20/481 (4%) Query: 39 IYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDM 98 ++ + ++ F ++A I + + + + + + L LE +P+L +D Sbjct: 83 MFTSGKKIPFNEIEQVVAMIETYLSMEEKQRQYTVENRKLRQELKGFLEFEDKPLLLLDR 142 Query: 99 KSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQ--N 156 + V + + G RL T +L + + + + G+ Sbjct: 143 QGIVTECSAGVQTVLGLNRSRLLGETIERLTSEKVKIDVTNVFKPSFQTVEMKLEGKREK 202 Query: 157 FLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHV 216 + ++I P Y+Q E V++ + L+ +Q +++ +F I+ S + Sbjct: 203 WHVQIKPTYVQGE----VVSFMIKFLKKETNQFKQSKDLL----YSFQDIIGSSEAIHFA 254 Query: 217 VEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELF 276 E A+++A +L+ G++GTGK++FA A H+ S RA P++A+NCA+IP++ +ESELF Sbjct: 255 REMARRIAGQDITILLRGESGTGKEMFAQAVHRESQRAQGPFVAINCAAIPDNLLESELF 314 Query: 277 GHAPE--------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHE 328 G+ GK G FE A+GG++ LDEIG+MS +QAKLLR L + RVG Sbjct: 315 GYESGAFTGAQRQGKAGRFELAHGGTIFLDEIGDMSLHLQAKLLRVLQERKVERVGGTQS 374 Query: 329 VHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARF 388 V+VDVR+I AT +NL E+VQK FREDLYYRLNV+ + +PP+R+ +D+ L E F+ R Sbjct: 375 VYVDVRIIAATHRNLEEMVQKKTFREDLYYRLNVIPITIPPVRERKEDLPILIEYFMKRL 434 Query: 389 ADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDIL--LPDYD 446 ++++ + D ++ RY WPGNVR++ N + + G + + L + Sbjct: 435 SNKEKKQPKYFSKDAYDLIFRYPWPGNVREIVNMVEHVIYLETGDLITADSLPAYLKIKE 494 Query: 447 AATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 + + + + +E + +L R+ +++AK +G+S + +L++ + Sbjct: 495 GKSTSQLQINVAPHGEESFKQQVLHLLDVYGRHTEGKKRIAKEMGISLPTLYRRLKKLKI 554 Query: 507 S 507 Sbjct: 555 R 555 >UniRef50_A1HSG4 Putative PAS/PAC sensor protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HSG4_9FIRM Length = 559 Score = 524 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 142/472 (30%), Positives = 235/472 (49%), Gaps = 36/472 (7%) Query: 66 DVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTA 125 ++R + E + L A+ E+ + ++ D N + ++ G + + TA Sbjct: 82 ELRDLVINKLEEINKELEAIFESSHDGIVVADENGVFIRINSSYERITGIPREEIIGKTA 141 Query: 126 AQLIN-----GFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVV 180 ++ + L++ + ++ +G+ ++ +PV+ + + V Sbjct: 142 QSIVEKGLVSDSVTIHVLKTGQSHTFSQ-TFRSGRQSVITGSPVFDSNN----RIIRVVT 196 Query: 181 MLRSTIRMGRQLQNVAAQDV----SAF------------SQIVAVSPKMKHVVEQAQKLA 224 +R + R + +A + +++ S KM+ V + A K A Sbjct: 197 NVRDMTEINRLKEELAESQKKLTQYSQIVETMTEEQMFNEKLIFRSRKMEVVRDSAIKFA 256 Query: 225 MLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA----- 279 + APLLITG++G GK++ A ++ SPR G P+L +NC +IPE +ESELFG+ Sbjct: 257 KVDAPLLITGESGVGKEVIADLVYRYSPRKGLPFLKINCGAIPETLLESELFGYEGGAFT 316 Query: 280 ---PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVI 336 EG+ G FE ANGG+V+LDEIGE+ +Q KLLRF+ F RVG V VDVR+I Sbjct: 317 GAKKEGRTGLFEMANGGTVMLDEIGELPLALQVKLLRFVQQKEFYRVGGKKVVKVDVRLI 376 Query: 337 CATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPR 396 AT ++L E+V + FR DL+YRLNVL +++PPLR+ P+DI+PL + ++ + V Sbjct: 377 AATNRDLQEMVNQKQFRSDLFYRLNVLRIHIPPLRERPEDIIPLVNYLLDKYNKKYNVS- 435 Query: 397 PKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATV-AVGED 455 +++ D+ T Y W GNVR+L+N I R + D E+ + A V Sbjct: 436 KRISGDVYHAFTNYTWVGNVRELENLIERLVVICDRDEITLDYLPDEMKKAIYVWRDDSI 495 Query: 456 AMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 E + E FER + Y S+R+ A++LG+ H+ I K +YG+ Sbjct: 496 GREQTYKEAKEEFEREFFCRALEKYKSSRQAAEKLGLDHSTIVKKAAKYGIK 547 >UniRef50_C7LR14 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LR14_DESBD Length = 476 Score = 524 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 124/454 (27%), Positives = 213/454 (46%), Gaps = 27/454 (5%) Query: 79 HLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQL---------- 128 +++ + E +L VD + M N A ++ G D L + Sbjct: 24 ETHWHEIVDIMQEGLLLVDPDGSIKMVNRALEEITGYTRDELIGANCSLFKCDACRRVRS 83 Query: 129 INGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRM 188 + + E ++ ++ + + D + GAV + + Sbjct: 84 EARQAWCKLFEQGVYVRRKCSIMRKDGTYVPILKSASILHAEDGSTV-GAVETMTDLSEL 142 Query: 189 GRQLQNVAA-----QDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLF 243 R+ + + + F +V S +M+ V +K A AP+ I G++GTGK+L Sbjct: 143 DRKENELQQLSRMLDEETMFHGMVGHSAQMRRVFHLIEKAAQSDAPVFIYGESGTGKELV 202 Query: 244 AYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPEG-------KKGFFEQANGGSVL 296 A A H PR+ +PY+ NCA++ E +ESELFGH ++G FE A+GG + Sbjct: 203 ARAIHDLGPRSDQPYVQFNCAALNEALLESELFGHVKGAFTGAFRHRQGRFEAAHGGDIF 262 Query: 297 LDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDL 356 LDEIG++ +Q KLLR L TF RVG++ ++ VDVR+I AT K L EL+ +G FREDL Sbjct: 263 LDEIGDLPMPVQVKLLRVLETKTFERVGDNRQLSVDVRIITATNKVLPELISQGQFREDL 322 Query: 357 YYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNV 416 +YR+NV+ ++LP LR+ +DI L + F+ R + L+ + Y+WPGNV Sbjct: 323 FYRINVIPVHLPSLRERKEDIPLLADYFIQRLRMKSDKDIKGLSPQTLRLFMDYSWPGNV 382 Query: 417 RQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQL 476 R+LK+++ A D + P+ + A D + ++ L Sbjct: 383 RELKSSLEYAFVLADHGHIEPEHLPHNVVVTAPPVAEPRYGNPGHDSQR----QQLVQAL 438 Query: 477 YRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKK 510 ++ + + A+ LG++ + N++R++G+ + Sbjct: 439 HQAGGNKSEAARILGINRVTVLNRMRKHGIDMTR 472 >UniRef50_C5DAI7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=4 Tax=Geobacillus RepID=C5DAI7_GEOSW Length = 569 Score = 524 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 133/469 (28%), Positives = 226/469 (48%), Gaps = 35/469 (7%) Query: 52 SSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQ 111 L+ I + ++ + + + ++E + + VD M N A Sbjct: 96 GELIGAIGVLEDISQMEHYHTL-----LKQMETIIEFSTDGIYVVDQNGITTMVNSAYEA 150 Query: 112 LFGQKLDRLRNHTAAQLIN----GFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQ 167 + G + + L L+ + + + + + ++ ++ PV+ + Sbjct: 151 ITGFRREELVGKHMYDLVKKGYFDQSVSLLVLQQKKRISILQKIGGKKDVIVTGNPVFNE 210 Query: 168 DENDQHVLTGAVVMLRSTIRMGRQLQNVAA-----QDVSAF------SQIVAVSPKMKHV 216 + + V+T +V + I+M +L+ + Q F QIV SP MK + Sbjct: 211 QGDIEMVVT-SVRDISHLIQMKAELEKAKSFSEMSQHRYTFSVDGSKEQIVFRSPSMKQL 269 Query: 217 VEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELF 276 ++ +++A +L+TG +G GK++ A H SPR KP++ +NC +IPE +ESELF Sbjct: 270 FDKVEQIAPYPTTVLLTGPSGVGKEVIANLIHHLSPRKNKPFIKVNCGAIPEPLLESELF 329 Query: 277 GHAPE--------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHE 328 G+ GK G E A+ G+++LDEIGEM +Q KLLR L + +R+G Sbjct: 330 GYEKGAFTGARQDGKIGLLELADKGTIMLDEIGEMPLSLQVKLLRVLQEKQVQRIGSHKT 389 Query: 329 VHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARF 388 +DVR+I AT +NL EL+ +G FREDLYYRL V+ + +PPL + P+DI PL + + + + Sbjct: 390 KKLDVRIIAATNQNLKELISQGKFREDLYYRLQVIEMYIPPLAERPEDIEPLIDHYFSFY 449 Query: 389 ADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAA 448 + L+ +L RY WPGNVR+LKN + + + + P D+ L YD Sbjct: 450 CKLYRIN-KHLSPKTKEILQRYHWPGNVRELKNLMENMVVSVPSQLIEPHDLPLHIYDQT 508 Query: 449 TVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAI 497 +L E +FER ++ + S RK A++LG+ H+ + Sbjct: 509 AATSP-----LTLKERVEQFERRLIYEAIEKNTSLRKAAQQLGIDHSTL 552 Score = 77.3 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 42/124 (33%), Gaps = 3/124 (2%) Query: 83 SALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEP 142 + ++ V+ VD K+ + N ++ +L + + LI LE+ Sbjct: 12 ENIFFSIHNGVIVVDRNGKILLINASAKKLLQIENENWEGKDIRDLIPTTQLPHVLENGT 71 Query: 143 QDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSA 202 + + I G+ L+ TP+Y E G + + L+ + + Sbjct: 72 SSIGVK-MNIAGRQCLVNRTPLYRNGELIGA--IGVLEDISQMEHYHTLLKQMETIIEFS 128 Query: 203 FSQI 206 I Sbjct: 129 TDGI 132 >UniRef50_C0GEJ3 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GEJ3_9FIRM Length = 462 Score = 524 bits (1350), Expect = e-147, Method: Composition-based stats. Identities = 124/445 (27%), Positives = 210/445 (47%), Gaps = 26/445 (5%) Query: 83 SALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEP 142 +L +PEP+ VD + V N + + ++I + +E Sbjct: 23 EYILNVIPEPIALVDNEGYVVFFNKQYQEFLNISDEEAIGKHVTEIIENTRLHVVISTEK 82 Query: 143 QDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQ--------- 193 + + I G+ +++ PV++ + + + + + ++LQ Sbjct: 83 PEI-DYLQNIKGREAIVQRIPVFMDGKLLGAIGKISFRDVDEVKSLAKKLQVAENKAKKF 141 Query: 194 --NVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQAS 251 + F+ I+ VS + V A K+A + +LI G+TG GK+LFA+A H S Sbjct: 142 ENELRYTATYDFADILGVSQSITAVKRLAHKVAATNTNVLIQGETGVGKELFAHAIHNNS 201 Query: 252 PRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGFFEQANGGSVLLDEIGEM 303 P++++NCA+IP+D +ESELFG+ GK G FE A+GG++ LDEIG+M Sbjct: 202 NSCNGPFVSINCAAIPQDLLESELFGYDEGAFTGARKNGKIGKFELADGGTIFLDEIGDM 261 Query: 304 SPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVL 363 MQ+KLLR L D F RVG VDVRVI AT N+ + V+ FR DL+YRLN + Sbjct: 262 PLGMQSKLLRVLQDRQFERVGGLTRQKVDVRVIAATNVNIEDKVRNNEFRADLFYRLNTI 321 Query: 364 TLNLPPLRDCPQDIMPLTELFVARFA-DEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNA 422 +L +PPLR+ +DI + + + E G + ++ LT Y WPGN+R+L N Sbjct: 322 SLIIPPLRERYEDISLIVDKSLKNLNSSEYG--NKRFSSQAMQTLTMYDWPGNIRELLNV 379 Query: 423 IYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERS-VLTQLYRNYP 481 + R +D + + + + + +L++ E+ ++ L Sbjct: 380 VERLFFLVDSDLVEENHV--KQALSGINSEERKSNTNALEDQIHLTEKDAIINALESCNG 437 Query: 482 STRKLAKRLGVSHTAIANKLREYGL 506 + + AK LG+ T + K+++ + Sbjct: 438 NKAQAAKLLGIHRTTLYQKMKKLNM 462 >UniRef50_C8X5E7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X5E7_DESRD Length = 450 Score = 524 bits (1350), Expect = e-147, Method: Composition-based stats. Identities = 123/440 (27%), Positives = 217/440 (49%), Gaps = 26/440 (5%) Query: 85 LLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLI------NGFNFLRWL 138 +L+++ E V +VD+ + N A+ ++ G+ + R L + L Sbjct: 13 VLDSINEGVFTVDLNWTLQGLNAAAEKITGRTREWARGRKCFDLFQSRLCGEDCPIRQTL 72 Query: 139 ESEPQDSHNEHVVINGQNFLMEITPVYLQD---ENDQHVLTGAVVMLRSTIRMGRQLQNV 195 + + ++N + E PV + + + G V + + + + + Sbjct: 73 TTGEPVVNRRTYILNAKE---ECVPVRISTAVLHDAEGRTIGGVETFQDLSEVEKLCREL 129 Query: 196 AAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAG 255 + F IV SP M+H+ E +A + +LI G++GTGK+LFA H S R Sbjct: 130 KSH--YTFDDIVGRSPAMQHIFETLPLVAKSDSTVLIEGESGTGKELFARTLHNRSRRCR 187 Query: 256 KPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQ 308 ++ +NCA++P+ +ESE FG+ A + G FE A+ GS+ LDEIG++S +Q Sbjct: 188 GQFVPVNCAALPDTLLESEFFGYEPGAFTDAKRSRSGRFELAHCGSIFLDEIGDISQALQ 247 Query: 309 AKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLP 368 +LLR L + + +G + ++DVRVI AT +NL LV++G+FR DLYYR+ V+ L +P Sbjct: 248 VRLLRVLQERSVEPLGSEKSRNIDVRVIVATNQNLKNLVEQGLFRRDLYYRIRVIKLRIP 307 Query: 369 PLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALT 428 PLR+ DI L + F+ +F Q + + LT Y +PGNVR+L+N + RA Sbjct: 308 PLRERRDDIPLLIDHFINKFNQLQDKDIAGVTDSVMNRLTEYDYPGNVRELENIVERAFV 367 Query: 429 QLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYR-NYPSTRKLA 487 G + + + D + + D +L E+ ER+++T+ + N + A Sbjct: 368 FCQGALIEMRHLPSELRDTQSRNLLGDKQGLTLKEM----ERALITRALQINKGHRKNSA 423 Query: 488 KRLGVSHTAIANKLREYGLS 507 + LG++ + + K++ + Sbjct: 424 RTLGINPSTLYRKMKALEID 443 >UniRef50_B8FXN8 Putative sigma54 specific transcriptional regulator n=2 Tax=Desulfitobacterium hafniense RepID=B8FXN8_DESHD Length = 574 Score = 523 bits (1349), Expect = e-147, Method: Composition-based stats. Identities = 131/485 (27%), Positives = 233/485 (48%), Gaps = 39/485 (8%) Query: 56 AEIRRIAGVTDVRTVPWMPSE-----REHLALSALLEALPEPVLSVDMKSKVDMANPASC 110 + I D+ + E + L A++E++ + ++ + AN A Sbjct: 97 KIVGAIGVFQDISDFEALSLELDNVKEINNDLDAIIESVADGIVVGSADGMILRANSAYL 156 Query: 111 QLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVIN---GQNFLMEITPVYLQ 167 Q+ G + +LIN + + + + V++ G+ LM PV+ Sbjct: 157 QITGIQEKEFVGKNVRELINQGYMNKSVTEMVFRTKSRVNVVDIRSGKELLMTGAPVF-- 214 Query: 168 DENDQHVLTGAVVMLRSTIRMGRQLQNVAAQD---------------VSAFSQIVAVSPK 212 N++ +T V ++R + + + +AF +I+ + Sbjct: 215 --NEEKEVTRVVTIVRDISELTELKGKLEQAEDAKNRYLKELEHFRSQNAFKKIITKNND 272 Query: 213 MKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVE 272 M+ ++ A +A + + +LI G++G GK+L A H+AS R+ KP++ +NC +IP + +E Sbjct: 273 MQKKLDTAYHVARVDSTVLILGESGVGKELIAQLIHRASHRSEKPFIKINCGAIPANLLE 332 Query: 273 SELFGHA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVG 324 SE FG+ EGKKG FE A+GG++ LDE+GE+ Q K+LR + + RVG Sbjct: 333 SEFFGYEAGSFTGALKEGKKGLFELADGGTLFLDEVGELPLEHQVKVLRAIQEKEILRVG 392 Query: 325 EDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELF 384 + +D+R+I AT ++L ++++ FREDLYYRLNV+ + +PPLR +D++P+ Sbjct: 393 GKKTIKLDIRIIAATNRDLEAMIREKAFREDLYYRLNVVPMTIPPLRQRKEDVIPIALEL 452 Query: 385 VARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPD 444 +AR+ G + ++ L Y WPGN+R+L+N I R + + + Sbjct: 453 LARYNTAYGYQ-KWIHPEVMDCLLNYDWPGNIRELENTIERLVVTSMDDCITKDAMAEIK 511 Query: 445 YDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREY 504 Y A SL + E +L + YR STRK A LG+S +++ K+++Y Sbjct: 512 YIDVHPAPNGLT---SLKAFLEKEENRLLEEAYRLMGSTRKAAAVLGISQSSMVKKMKKY 568 Query: 505 GLSQK 509 G+ + Sbjct: 569 GIEIQ 573 Score = 82.7 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 13/125 (10%), Positives = 48/125 (38%), Gaps = 8/125 (6%) Query: 85 LLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQD 144 + +++ V+++D + + + N A+ ++ G + ++I + L L++ + Sbjct: 14 IFDSIYNGVVAIDQQGIIKLFNEAAAKIMGVAKEETIGRRVEEVIPNTSLLEILKTGKAE 73 Query: 145 SHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNV--AAQDVSA 202 +N+ + + + P+ + + GA+ + + + + + Sbjct: 74 -NNQKMHLGNCEIISNRGPICKDGK-----IVGAIGVFQDISDFEALSLELDNVKEINND 127 Query: 203 FSQIV 207 I+ Sbjct: 128 LDAII 132 >UniRef50_A1HS80 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HS80_9FIRM Length = 648 Score = 523 bits (1349), Expect = e-147, Method: Composition-based stats. Identities = 143/508 (28%), Positives = 244/508 (48%), Gaps = 48/508 (9%) Query: 26 IDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSAL 85 + +E+ + I E+ + E +RI V D ++ L + Sbjct: 157 VSKLLLEVREVRLIM-----SGAEAVCEAIEEAQRIIKVQD-------KEKKSAEQLRTI 204 Query: 86 LEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDS 145 L + + V+++D K+ + NP++ +F K ++ Q+I L L+ + Sbjct: 205 LSFIHDGVIAIDNTGKITVINPSAESIFKLKNTQVIGKNIKQVIPNTKMLDVLKHGKAEI 264 Query: 146 HNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQ------- 198 +G + P+ + E + G V + R+ + Q + + Sbjct: 265 EQLQNTPSGM-VVTNRVPIEINGE-----IMGVVATFKEAGRIQQTEQKIRTKLYSQGLY 318 Query: 199 DVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPY 258 +F I+A P+M+ ++E+A++ A +LI ++G GK+LFA + HQAS R P+ Sbjct: 319 AKYSFENIMAWDPEMRRIIERAKRYARTDGTVLIEAESGCGKELFAQSIHQASSRCRGPF 378 Query: 259 LALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAK 310 +A+NC+++P +ESELFG+ EGK G E A+GG++ LDEIG+M +QA+ Sbjct: 379 VAINCSALPTQLLESELFGYVEGAFTGARKEGKPGLIELAHGGTLFLDEIGDMELTLQAR 438 Query: 311 LLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPL 370 LLR L + R+G D + VD+R++ AT L + V +G FR DL++RLNVL L++PPL Sbjct: 439 LLRVLEERQVMRLGADKWLPVDIRIVAATNAPLKQRVLRGQFRMDLFHRLNVLNLSIPPL 498 Query: 371 RDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQL 430 R +DI+PL E F+A FA++ G +L A +L RY+WPGNVR+L+N + R Sbjct: 499 RHRREDIIPLAEYFLAEFANKYGQRPIELTAAAKDILLRYSWPGNVRELRNIMERISLVY 558 Query: 431 DG----YELRPQDILLPDY----------DAATVAVGEDAMEGSLDEITSRFERSV-LTQ 475 + + + DY A T + L + +R + ++ Sbjct: 559 EEAQDVSAILRDFLGNSDYCNNSDYSTLELAKTGMLAVTPERFLLPQSIRDMKRQLAIST 618 Query: 476 LYRNYPSTRKLAKRLGVSHTAIANKLRE 503 L + K AK+LG++ + LR+ Sbjct: 619 LAACGGNKSKAAKQLGITRATLDRLLRQ 646 >UniRef50_C1DNV1 Sigma54-dependent activator protein n=8 Tax=Gammaproteobacteria RepID=C1DNV1_AZOVD Length = 667 Score = 523 bits (1348), Expect = e-147, Method: Composition-based stats. Identities = 153/471 (32%), Positives = 222/471 (47%), Gaps = 24/471 (5%) Query: 47 EFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMAN 106 F + ++ A ++ M + LLE L E ++ +D + + N Sbjct: 202 HFHTLGTVQAAAEAVS--------RQMALQALLEEQRTLLEVLNEGLVVLDERGCIKALN 253 Query: 107 PASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYL 166 + QLF + L +L G L + H+ + + L + T + Sbjct: 254 RYARQLFRVER-DLLGAPFHRLGRGERVDSLLLRADEGLHDLDITLQ----LHDGTHLSC 308 Query: 167 QDENDQHVLTGAVVMLRSTIRMGRQLQNVAA-QDVSAFSQIVAVSPKMKHVVEQAQKLAM 225 G +V LR R+ + + Q F I+ S M+ + A+ + Sbjct: 309 LASVCPTERGGRIVSLRENRRIREITRRIIGTQASYTFETILGGSRAMQDTLRLARIASR 368 Query: 226 LSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH------- 278 + LI G++GTGK+LFA A H AS R G P++A+NC +IP D V+SELFG+ Sbjct: 369 GDSTTLILGESGTGKELFAQAIHNASERCGGPFVAVNCGAIPRDLVQSELFGYIEGAFTG 428 Query: 279 -APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVIC 337 A G G FE A+GG++ LDEIG+M QA LLR L +G RVG VDVR++ Sbjct: 429 SARGGSAGKFELADGGTIFLDEIGDMPFDAQASLLRVLQEGEVTRVGAKRSQPVDVRIVA 488 Query: 338 ATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRP 397 AT +NL V G FREDLYYRLNVL+L++PPLR +DI L + F+ R A P Sbjct: 489 ATNRNLSRAVADGSFREDLYYRLNVLSLSVPPLRMRREDIPTLAQHFLERCARSLRKPVR 548 Query: 398 KLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAM 457 + + +L +AWPGNVR+L+N I RA G + +D+ L A A Sbjct: 549 GIVREALDILMAHAWPGNVRELENTIERAANLAGGELIEAEDLPLELAQVARRAAEPAVR 608 Query: 458 EGSLDEITSRFERSVLTQLYR-NYPSTRKLAKRLGVSHTAIANKLREYGLS 507 G+ + E + + R + R AKRLGVS + NK+ YGLS Sbjct: 609 CGAAMD-LGSHEMNAIAAALRECRGNVRLAAKRLGVSRGGLYNKMNRYGLS 658 >UniRef50_C0GD56 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GD56_9FIRM Length = 454 Score = 523 bits (1348), Expect = e-147, Method: Composition-based stats. Identities = 134/450 (29%), Positives = 211/450 (46%), Gaps = 33/450 (7%) Query: 81 ALSALLEALPE---PVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRW 137 + LLE + L VD S++ + ++ G ++I Sbjct: 8 EIYELLEKAFDEFKGALVVDRNSRIVLLTRGYAEILGVDRKEAIGKPVTEVIPHSRMSEV 67 Query: 138 LESEPQDSHNEHVVINGQNFLMEITPV-------------YLQDENDQHVLTGAVVMLRS 184 L+S + + + G+ ++ P+ + ++ G + L + Sbjct: 68 LKSGEPEIA-QVWEVKGETAIISRVPIKRGEEVIGVVAFSVFRGMDEVRDFLGRLRYLDA 126 Query: 185 TIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFA 244 + R + I+ +SP + V EQ +A + LL+TG+TGTGK+LFA Sbjct: 127 ELNYYRSEVEKLRGARFSLENILGISPAINRVKEQLACIAKNDSTLLLTGETGTGKELFA 186 Query: 245 YACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVL 296 +A H +S R + +NCA+IP++ +ESELFG+ GK G FE AN G++ Sbjct: 187 HALHLSSKRRFGHLIKVNCAAIPDELLESELFGYEEGAFTGARKGGKPGKFELANRGTLF 246 Query: 297 LDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDL 356 LDEIGEM R+QAKLLR L DG R+G + VDVR++ AT KNL ELV+ FREDL Sbjct: 247 LDEIGEMPARLQAKLLRVLQDGEIERIGGTEPLQVDVRIVAATNKNLAELVRHRQFREDL 306 Query: 357 YYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNV 416 YYRLNV+ L++PPLR+ +DI L F+ GV + ++ V Y WPGNV Sbjct: 307 YYRLNVIELHIPPLRERMEDIPCLVVHFIRELNHRLGVKVKGITPEVEEVFQSYHWPGNV 366 Query: 417 RQLKNAIYRALTQLDGYELRPQDIL--LPDYDAATVAVGEDAMEGSLDEITSRFERSVLT 474 R+L N + R + + + DI LP +++ + E ++ Sbjct: 367 RELYNVLERTMNVIQRDVIGLADINWFLPRVLSSSGRQTSRSSN-----TLRNLEAKIIH 421 Query: 475 QLYR-NYPSTRKLAKRLGVSHTAIANKLRE 503 ++ + + A+ LG+ + I NKL+ Sbjct: 422 RVLESCNGNKSRAAEILGIHRSTIYNKLKR 451 >UniRef50_B7HA57 Sensory box sigma-54 dependent DNA-binding response regulator n=58 Tax=Bacillus cereus group RepID=B7HA57_BACC4 Length = 553 Score = 523 bits (1348), Expect = e-147, Method: Composition-based stats. Identities = 131/453 (28%), Positives = 219/453 (48%), Gaps = 28/453 (6%) Query: 83 SALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLI--NGFNFLRWLES 140 +++ V +D K V + ++F + + + L+ L Sbjct: 101 DTVIQTTDSSVTVIDSKEYVRTWTDGAEKIFSVNHNEIIGQPITRFFDYKDLEILQSLHD 160 Query: 141 EPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGA-----------VVMLRSTIRMG 189 H L+ PVY DE V++ + + + Sbjct: 161 GKSIVAQFHQPRPDLFVLINSNPVYCNDEIIGAVVSETDVTNQVALNEKLFNMSHEMHRL 220 Query: 190 RQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQ 249 Q + F + SP ++ ++ A+K+ + + +LI G++G GK++FA A H+ Sbjct: 221 EQEVAKYKDESDPFLAMNGKSPVIQRTIQLARKVCSVKSTVLILGESGVGKEVFAKAIHE 280 Query: 250 ASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGFFEQANGGSVLLDEIG 301 AS A P++++NC +IPE ESELFG+ GKKG E A GG++ LDEIG Sbjct: 281 ASEAAKAPFISINCGAIPEALFESELFGYERGAFSGANSKGKKGKIELAQGGTLFLDEIG 340 Query: 302 EMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLN 361 EM MQ KLLR L + + RVG + E+++D R+I AT ++L E ++KG FREDLYYRLN Sbjct: 341 EMPLDMQVKLLRVLQERKYYRVGGEKEINIDFRIIAATNRDLQEEMRKGTFREDLYYRLN 400 Query: 362 VLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKN 421 V++L +PPLR+ +DI+ LT F+ F+ P L + + L Y WPGN+R+L+N Sbjct: 401 VVSLQIPPLRERREDIIELTYSFLNDFSINYNRPIRDLPSSIMHELLHYNWPGNIRELRN 460 Query: 422 AIYRALTQLDGYELRPQDIL------LPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQ 475 + R + ++ + + L ++ A ++ + + SL E E+ V+ + Sbjct: 461 VVERLVVFATDGIIKQEYLPFHTTETLDNHTAHSLLLSNNNTILSLQEEMDEHEKKVIER 520 Query: 476 LYR-NYPSTRKLAKRLGVSHTAIANKLREYGLS 507 R + + AK+LGV+ + N+L++ L Sbjct: 521 ALRILNGNKLECAKQLGVTRATLYNRLKKLRLQ 553 >UniRef50_C4FI59 AAA family ATPase n=1 Tax=Sulfurihydrogenibium yellowstonense SS-5 RepID=C4FI59_9AQUI Length = 531 Score = 523 bits (1348), Expect = e-147, Method: Composition-based stats. Identities = 131/467 (28%), Positives = 236/467 (50%), Gaps = 33/467 (7%) Query: 47 EFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMAN 106 E F+ ++ EIR V + + E+E L +L+++ + ++ VD + K+ N Sbjct: 90 ENGEFAGIIEEIRDSTKVNQY--IEIIKKEKEFSHL--ILDSVIDAIVVVDNQGKIINYN 145 Query: 107 PASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYL 166 + L + ++ + LI L+ L S +D G+ ++++ V+ Sbjct: 146 QNAKNLL-CREVDIKGMNLSLLIKKD--LKELPSSREDI-IIETPAYGK---IKVSAVFT 198 Query: 167 QDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAML 226 + ++ + + V+ ++ + S S+++ S M +V++ A+ +A Sbjct: 199 RLKSGEGSIFSFYVVPDCM---------LSQEAASNKSRLITKSSLMVYVLDIAKTVADT 249 Query: 227 SAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE----- 281 +A +L+ G++GTGK++ A H S R KP++ +NCA+IP++ +ESELFG+ Sbjct: 250 TANVLLEGESGTGKNVLAKYIHNQSSRRDKPFVKINCAAIPDNLLESELFGYVKGAFTGA 309 Query: 282 --GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICAT 339 K G E A+GG++ LDEIGE+ +Q+KLL + + F R+G+ VDVR+I AT Sbjct: 310 VKDKPGKVELADGGTLFLDEIGELPTYLQSKLLHLIQEKEFERLGDTKTKKVDVRIIAAT 369 Query: 340 QKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKL 399 K+L +LV++G FREDLYYRL V+++ +P LR+ +DI L F+ ++ + + Sbjct: 370 NKDLSQLVKEGKFREDLYYRLKVISIKVPALRERKEDIPFLINYFIDLYSKQYNKHIKGI 429 Query: 400 AADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEG 459 + + +L Y +PGN+R+L+N I RA+ G + D+ + D Sbjct: 430 SPEAVRLLLNYDYPGNIRELENIIERAVILAKGKFIEVSDLPDEIVYNTKILTQND---- 485 Query: 460 SLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 LDE ++ +L L + K AK L + + KL++YGL Sbjct: 486 -LDEEIDE-KQKILRVLESVNWNKSKAAKILNIDRVTLWRKLKKYGL 530 Score = 48.0 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 20/138 (14%), Positives = 43/138 (31%), Gaps = 27/138 (19%) Query: 85 LLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQD 144 LL L V+ VD ++ N + + K + + P D Sbjct: 5 LLNNLSTGVIFVDKNKEIKYVNKTAKDILNIKE----GQSC----KNLKMFDICKKCPID 56 Query: 145 SHNEHVVIN------------GQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQL 192 +N+H + PV+ E G + +R + ++ + + Sbjct: 57 YYNKHSTFPEFEDFNITLSCCSKKVCYSFKPVFENGEF-----AGIIEEIRDSTKVNQYI 111 Query: 193 QNVAAQDVSAFSQIVAVS 210 + + + FS ++ S Sbjct: 112 EIIKKEKE--FSHLILDS 127 >UniRef50_A0LPB0 Sigma54 specific transcriptional regulator, Fis family n=20 Tax=Deltaproteobacteria RepID=A0LPB0_SYNFM Length = 519 Score = 522 bits (1347), Expect = e-147, Method: Composition-based stats. Identities = 129/445 (28%), Positives = 218/445 (48%), Gaps = 24/445 (5%) Query: 83 SALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLI-----NGFNFLRW 137 +L+++ + V +VD+ ++ N A+ ++ G ++ L++ Sbjct: 81 ETILDSIADGVFTVDLDWRITSFNRAAEEITGVSASDAIGRPCCEVFRANVCESTCVLKF 140 Query: 138 LESEPQDSHNEHVVI---NGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQN 194 + N+ V I +G+ + ++ L++ + G V R + + Sbjct: 141 TMETRKPIVNKSVAILRADGREIPISVSTALLKNASGHT--IGGVETFRDLSLVETLRKE 198 Query: 195 VAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRA 254 + Q F IV+ SP M + ++A + +LI G++GTGK+L + A H S RA Sbjct: 199 IDRQ--YRFQDIVSKSPAMLELFAILPEVARSESTVLIQGESGTGKELLSRAVHSLSSRA 256 Query: 255 GKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRM 307 P++A+NC ++P+ +ESELFGH A + + G F QA GG++ LDEIG++SP + Sbjct: 257 AGPFVAINCGALPDTLLESELFGHVAGAFTDARKNRAGRFAQAEGGTLFLDEIGDVSPAL 316 Query: 308 QAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNL 367 Q +LLR L + T+ +G V +VR++ A+ ++L +LV +G FR+DLYYR+NV+ L L Sbjct: 317 QVRLLRVLEERTYEPLGSSRTVTANVRIVAASNRDLAQLVAEGSFRKDLYYRINVVKLEL 376 Query: 368 PPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRAL 427 P L +DI L E F+AR + L+ + V R+ WPGN+R+L+N I A Sbjct: 377 PTLARRKEDIPLLAEHFIARLNKLRNKNILGLSHEALAVFMRHNWPGNIRELENVIEYAF 436 Query: 428 TQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLA 487 G ++P LP+Y A V D+ SL + +R R L RN A Sbjct: 437 ILCRGGLIQPA--FLPEYLHAHACVLPDSGGLSLRDNEARAIRD---ALDRNQWRRMATA 491 Query: 488 KRLGVSHTAIANKLREYGLSQKKNE 512 + LG+ + K++ + Sbjct: 492 RELGIDKNTLRRKMKRLNIRADDPR 516 >UniRef50_B8FKE8 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FKE8_DESAA Length = 460 Score = 522 bits (1347), Expect = e-147, Method: Composition-based stats. Identities = 133/461 (28%), Positives = 219/461 (47%), Gaps = 26/461 (5%) Query: 68 RTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQ 127 R P + L ALL E ++ VD + + + A+ ++ Sbjct: 5 RKKSAAPRKIPQDLLDALLNNPYEGLILVDAQGIIRHMSSANEGIYPFTPQESVGRHIHD 64 Query: 128 LINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPV-------------YLQDENDQHV 174 + R + + + ++++ + ++ P+ D Sbjct: 65 VSPKSRMDRTIRTGKAEI-GRSMILDDKTRVVARFPLSKDGKVIGAAGKLLFMDPGKMKE 123 Query: 175 LTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITG 234 L + L + + + I+ SP + A++ A +P+LI G Sbjct: 124 LYERITHLERRLEKYEDELAQIYRTNYSLDSILGDSPDIIQAKRLAEQAAGADSPVLIMG 183 Query: 235 DTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGF 286 ++GTGK+LFA+A H S R + +NCA+IP + +E+ELFG+ +GK G Sbjct: 184 ESGTGKELFAHAIHGLSQRGSGALVKVNCAAIPGELLEAELFGYEEGAFTGARKKGKAGK 243 Query: 287 FEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVEL 346 FE A+GG++ LDEIG+M MQ K+LR L + RVG + VD R+ICAT ++L +L Sbjct: 244 FELAHGGTIFLDEIGDMPLPMQIKILRVLQEREVERVGSNRPKKVDFRLICATNRDLPKL 303 Query: 347 VQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTV 406 +++G+FR+DLYYR+NV+TL LPPLRDC DI PL + F E PK+ + + Sbjct: 304 MRQGLFRQDLYYRINVMTLKLPPLRDCRDDIFPLFQHFSRILGRE--KTPPKILPGVKEI 361 Query: 407 LTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITS 466 L +Y+WPGNVR+L+N RAL + P D+ PD V + SL + Sbjct: 362 LEKYSWPGNVRELRNVTERALIVCRDNTVSPADL--PDLSQQEVLPQVIEEKASLKALMD 419 Query: 467 RFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 + E+ ++ Q S + A+ LG+ T + K++++G+ Sbjct: 420 QAEKKIIEQALVQASSRAEAARNLGIHRTGLYQKMKKHGIE 460 >UniRef50_C9XRJ3 Sigma-54-dependent transcriptional activator n=5 Tax=Clostridium difficile RepID=C9XRJ3_CLODC Length = 596 Score = 522 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 125/474 (26%), Positives = 222/474 (46%), Gaps = 23/474 (4%) Query: 59 RRIAGVTDVRTVP---WMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQ 115 +I GV + +M E L L ++ + E + +++ + V + N + + Sbjct: 123 NKIIGVLKQEHIRDYLYMHLEDYGLTLKYIIGQIKEGICAINNEGVVILWNKFMEERYDI 182 Query: 116 KLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHV-VINGQNFLMEITPVYLQDENDQHV 174 K + + + + + L S+ S L+ P++ ++E V Sbjct: 183 KSEDIVGRPMNEFLENTISEKVLNSKVGMSDLYFTDKKENMYALVHANPIFYKEEFIGVV 242 Query: 175 LTGAVVMLRSTIRMGRQ---------LQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAM 225 T V + + + V +F +I+ S K++ A+++A Sbjct: 243 CTEVDVTEAKILALELEKVNDTLKYLKNEVKNLSKGSFDKILGKSYKLEKSKAIAKQVAR 302 Query: 226 LSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA------ 279 ++ + I G++GTGK++FA A H S R G+ ++ +NC++IP + ESE FG+ Sbjct: 303 TNSSIFIWGESGTGKEVFARAIHDYSERKGQ-FIPVNCSAIPNELFESEFFGYESGAFTG 361 Query: 280 --PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVIC 337 +G+ G FE A G+V LDEI ++ MQAKLLR L + RRVG D + ++ R+I Sbjct: 362 ASKKGRIGIFELAKDGTVFLDEIADLPLSMQAKLLRVLQEKEIRRVGGDTTIKINPRIIS 421 Query: 338 ATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRP 397 AT K+L ++V+ FREDLYYRLNV+ + +PPLR+ +DI L F+ + P Sbjct: 422 ATNKDLSKMVKAEKFREDLYYRLNVVEIKIPPLRERKEDIGLLVHSFLEEICKQNNKPVL 481 Query: 398 KLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAM 457 ++ D+ + Y W GN+R+LKN I + ++ D+ D+ + E+ Sbjct: 482 TISKDVIDIFQNYRWKGNIRELKNTIENIVVLSQNSKIDVDDVPSYMMDSTNNSTEEEEY 541 Query: 458 EGSLDEITSRFE-RSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKK 510 L + T + E +++ L + + K AK L + T + K+ +Y + K Sbjct: 542 PLDLTKATQKIEIKNITKALKMSNGNKAKAAKILNIPRTTLYYKIDQYKIDVSK 595 >UniRef50_Q484S1 Sigma-54 dependent transcriptional regulator n=1 Tax=Colwellia psychrerythraea 34H RepID=Q484S1_COLP3 Length = 532 Score = 521 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 181/539 (33%), Positives = 299/539 (55%), Gaps = 39/539 (7%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI-GRIYLNFAELEFESFSSLMAEIR 59 MR+ + DR+G+++E+L + + +L+ +EI +++ +A L S +A Sbjct: 1 MRVVIESSDRIGISQEILAIFAKQAWNLKTVEITSCFTYVHVEYAALTLSSIRECLA--- 57 Query: 60 RIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLD- 118 + GV V + +PSE+ L ALL+ +PEP++ VD + N AS +L K Sbjct: 58 SVIGVNSVEVINLLPSEQRESHLQALLDKMPEPIIDVDSNGLILAMNKASHKLKPSKDAT 117 Query: 119 -------RLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQD--- 168 + N + + ++ V I G+ ++++++PV + Sbjct: 118 EPELVTTDYLGKPIEAFLGQINKTMLTNA----ATSQAVTIEGRAYILDVSPVISSNSST 173 Query: 169 --ENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAML 226 +++ ++G+V++ RS +GRQ+ + + +F I+ S + + Q+++ A L Sbjct: 174 LEQDNTGQVSGSVLLFRSMNTLGRQISLMQSHQDHSFDSIIGQSKSISLIKAQSKRFAEL 233 Query: 227 SAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA------- 279 P+LI+G+TGTGK+L A A HQAS R+ P+LA+NC+++PE +ESELFG+A Sbjct: 234 DLPVLISGETGTGKELIARALHQASSRSKAPFLAINCSALPEHLLESELFGYASGAFTGA 293 Query: 280 -PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICA 338 GK G E A GG + LDEI EMSP +QAKLLRFL D T+RRVG E+ ++R++ A Sbjct: 294 QKGGKPGLIELAEGGCLFLDEIAEMSPYLQAKLLRFLQDLTYRRVGGTKELVANIRIVSA 353 Query: 339 TQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFAD------EQ 392 + ++L +L+ + FREDLYYRLNVL+++LPPLR+ D+ L LF+ A + Sbjct: 354 SHQDLAKLISQKTFREDLYYRLNVLSIDLPPLRERMADMSLLANLFIENAAKQVSNSQQT 413 Query: 393 GVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAA-TVA 451 + +PKL A ++L +AWPGN+RQL+N ++ + +G ++ D+L A Sbjct: 414 DIAKPKLTAQALSLLQGFAWPGNIRQLQNVLFSVVALNNGGDICADDLLQVLNKHAGKQQ 473 Query: 452 VGEDAMEGSLDE---ITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 + D ++ + + FE +L L+ +P+TRKLA+RL VSH IA KLRE+G+ Sbjct: 474 LSNDIDIQTIKDWSSAQADFEAKLLEHLHPLFPTTRKLAERLNVSHNKIAMKLREHGIK 532 >UniRef50_Q0AVA7 Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains-like protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AVA7_SYNWW Length = 696 Score = 521 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 132/477 (27%), Positives = 225/477 (47%), Gaps = 25/477 (5%) Query: 58 IRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKL 117 +R I+ ++ +++ + L A+ E+ + + D ++ N ++ G Sbjct: 222 LREISEFEELVRQSQ-YTQKLNRELDAIFESSFDGLYVTDGQAITLRLNKGFERITGVTA 280 Query: 118 DRLRNHTAAQLINGFNFLR----WLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQH 173 A L+ F R + + V G L+ P++ ++ N Sbjct: 281 AECVGRHMADLVKEGKFSRSGTLLALEKKERVTISLVAATGNEVLVTSNPIFDEEGNIIL 340 Query: 174 VLTGA--VVMLRSTIRMGRQLQNVAAQDVSAFSQI--------VAVSPKMKHVVEQAQKL 223 V+T + L R Q++ + S QI V S KMK +++ ++ Sbjct: 341 VVTNVRDITELNELQRKLEQVEGLTQLYRSQLEQIKLQTSRQLVFNSTKMKELLDLVLRV 400 Query: 224 AMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA---- 279 + + +LI G++G GK+L A H +S R P + +NC +IPE+ +ESELFG+ Sbjct: 401 TGVDSTILIQGESGVGKELIAEIIHSSSNRKDGPLIKVNCGAIPENLLESELFGYEAGAF 460 Query: 280 ----PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRV 335 GK G FE A GG + LDEIGE+ +Q KLLRFL D RVG + + VDVR+ Sbjct: 461 TGASKSGKIGLFELAQGGILFLDEIGELPLNLQVKLLRFLQDKEILRVGGEQPIIVDVRI 520 Query: 336 ICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVP 395 + T +NLVE++ FR DLYYRLNV+ + +PPLR+ P+D+ L F+ F ++ + Sbjct: 521 LAGTNRNLVEMIANHQFRLDLYYRLNVIPIFVPPLRERPEDVPVLANYFLNVFNNKYQMN 580 Query: 396 RPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGED 455 +L + VL Y WPGNVR+L+N + R + + QD+ + + + + Sbjct: 581 -KRLHKSVIDVLMEYHWPGNVRELENLMERMVVTSINNIISMQDLP-ASFKVPRLKLDSE 638 Query: 456 AMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKKNE 512 L + ER +L + + S+ ++A L V+ + + K +YG+ ++ Sbjct: 639 QDLLPLRQAVENTERELLEAAFARFRSSYQVATALQVNQSTVIRKAAKYGIKRQDGR 695 Score = 65.0 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 54/147 (36%), Gaps = 7/147 (4%) Query: 66 DVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTA 125 D+ + E+ + A ++A+ PV+ +D ++ + N + +L G ++ R Sbjct: 110 DILVALALEIEKGKEEIEAAIDAVYNPVIEIDNDFRIKIFNRQASRLLGIDIEEARGANV 169 Query: 126 AQLINGFNFLRWLESEP-QDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRS 184 L+ G L L + +VI ++FL Y D + G+V++LR Sbjct: 170 HDLLGGTEVLDSLIHGNHKPLPVNKLVIGDRSFLP-----YRNDVVQDGNVIGSVLVLRE 224 Query: 185 TIRMGRQLQNVAAQDVSAFS-QIVAVS 210 ++ + S Sbjct: 225 ISEFEELVRQSQYTQKLNRELDAIFES 251 >UniRef50_P54529 Putative sigma L-dependent transcriptional regulator yqiR n=39 Tax=Bacteria RepID=YQIR_BACSU Length = 692 Score = 519 bits (1339), Expect = e-146, Method: Composition-based stats. Identities = 139/488 (28%), Positives = 228/488 (46%), Gaps = 39/488 (7%) Query: 48 FESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANP 107 F+ + + + + VRT+ L A++++ E + VD + N Sbjct: 215 FKDITDAVELAEEVTNLKQVRTM-----------LEAIIQSSDEAISVVDENGIGLLINK 263 Query: 108 ASCQLFGQKLDRLRNHTA-AQLINGFNFLRWLESEPQDSHNEHVVI--NGQNFLMEITPV 164 A ++ G + A + G + + + + + N + ++ + PV Sbjct: 264 AYTKMTGLSEKEVIGKPANTDISEGESMHLKVLETRRPVRGVRMKVGPNEKEVIVNVAPV 323 Query: 165 YLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAA-----QDVSAFSQIVAVSPKMKHVVEQ 219 + V G + + + +L + F I+ S +M +EQ Sbjct: 324 IVDGILKGSV--GVIHDVSEIKMLTAELNRARQIIRTLEAKYTFDDIIGKSEQMLVALEQ 381 Query: 220 AQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA 279 A+ A A +L+ G++GTGK+LFA+A H S R ++ +NCA++ E+ +ESELFG+ Sbjct: 382 AKLGAKTPATILLRGESGTGKELFAHAIHNESDRKYNKFIRVNCAALSENLLESELFGYE 441 Query: 280 PE--------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHV 331 GKKG FE+AN GS+ LDEIGE++ MQAKLLR L + RVG + V Sbjct: 442 DGAFSGAKRGGKKGLFEEANNGSIFLDEIGELTQNMQAKLLRVLQEKEIVRVGGTKAIPV 501 Query: 332 DVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADE 391 +VRVI AT N+ + + G FREDLYYR+N +++PPLR +DI L+ + + + Sbjct: 502 NVRVIAATNVNIEKAMADGTFREDLYYRINRYPISIPPLRQRLEDIEALSVRLIQKINRD 561 Query: 392 QGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDG--YELRPQDIL-------L 442 G L+ L+ Y WPGNVR+L+N + RA+ L+ + + Sbjct: 562 YGRNVKGLSQQALRALSAYHWPGNVRELENVLGRAMIFLNPHMEWIEKDHLPVFELEQKE 621 Query: 443 PDYDAATVAVGEDAMEGSLDEITSRFERSVLTQ-LYRNYPSTRKLAKRLGVSHTAIANKL 501 D D T D L +FE ++ Q L +++ + K AK LGVS + K+ Sbjct: 622 NDTDQGTGFDFPDIEGEKLSVAVEKFEAHLIQQTLEKHHFNRTKTAKALGVSIRNLYYKM 681 Query: 502 REYGLSQK 509 +YGL+ + Sbjct: 682 DKYGLANE 689 Score = 88.1 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 17/165 (10%), Positives = 60/165 (36%), Gaps = 6/165 (3%) Query: 56 AEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQ 115 + + + + + + + + + ++ +D+ ++ + N + ++ G+ Sbjct: 93 KMAYIVFQLMEEKQHLIQMLKEQTYKYDRIFNSTHDGMIFIDINEEIILFNHMAEKMVGK 152 Query: 116 KLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVL 175 K + + ++I R L++ + + + ++ + + P+ + L Sbjct: 153 KREEVIGRPIKEVIPSTKMPRILKTRVPEYNQKQLLGDHLQIVTTRLPIIDEGG----RL 208 Query: 176 TGAVVMLRSTIRMGRQLQNVA--AQDVSAFSQIVAVSPKMKHVVE 218 GA+ + + + V Q + I+ S + VV+ Sbjct: 209 LGALCVFKDITDAVELAEEVTNLKQVRTMLEAIIQSSDEAISVVD 253 >UniRef50_C0GEG9 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GEG9_9FIRM Length = 476 Score = 519 bits (1339), Expect = e-146, Method: Composition-based stats. Identities = 143/482 (29%), Positives = 231/482 (47%), Gaps = 42/482 (8%) Query: 60 RIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFG-QKLD 118 + +T+V V + E L ++E+ + ++ D + ++ AN + ++ G K+ Sbjct: 5 NVIHITEVDEVRRLKKE-----LDVIIESCYDGIILSDREGRIFRANQSMERVSGGIKVA 59 Query: 119 RLRNHTAAQLINGFNFLR--WLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLT 176 L TA +L L + + + G + P Y +D+ Sbjct: 60 DLLGKTALELEKEGIILSQSKIILGKDPLTLKQNIRTGVELFITSKPAY----DDRGRFL 115 Query: 177 GAVVMLRSTIRMGRQLQNVAAQDVSAF----------------SQIVAVSPKMKHVVEQA 220 V +R + R Q V +F ++V +S KMK + E+A Sbjct: 116 FYVATIRDMTELSRLRQEVEETKDQSFRYYQELLQLRGQILEQDEMVVISRKMKDICERA 175 Query: 221 QKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAP 280 ++A +LI+G +G+GK++ A H +SPR P++ +NC +IPE +ESELFG+ Sbjct: 176 IRVAQTDTNVLISGPSGSGKEMIAKLIHNSSPRKSGPFVQINCGAIPETLLESELFGYEK 235 Query: 281 E--------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVD 332 GK G E A+ G++LLDEIG++SP +Q KLLR + + RVG + ++ Sbjct: 236 GAFTGAGRQGKIGLMEMADLGTILLDEIGDLSPLVQVKLLRAIQEQVIYRVGSTTPIKLN 295 Query: 333 VRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQ 392 VR+I AT KNL ++V++ +FREDLYYRLNV+ +++PPLR+ + I+PL F+ F + Sbjct: 296 VRIIAATNKNLEKMVEENLFREDLYYRLNVIPIHIPPLRERREAIVPLALHFLKSFNQKH 355 Query: 393 GVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATV-- 450 G L+ ++ Y WPGNVR+L+N I R + D L P + Sbjct: 356 GTD-KSLSPEVCACFEEYDWPGNVRELENLIERMVVISDEKVLTPYWLPRNVSSGQAPRS 414 Query: 451 ---AVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 E E SL + ER + + + S RK AK LGV H+ + K++ GL Sbjct: 415 DMSPKQECTAEISLKQARESAERDAICRALSLHGSIRKAAKSLGVDHSTVVRKMKSLGLE 474 Query: 508 QK 509 K Sbjct: 475 HK 476 >UniRef50_A5D2Z2 Transcriptional regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D2Z2_PELTS Length = 562 Score = 519 bits (1339), Expect = e-146, Method: Composition-based stats. Identities = 127/468 (27%), Positives = 216/468 (46%), Gaps = 27/468 (5%) Query: 71 PWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLIN 130 + + L + + + +D K N A +G ++ L A L Sbjct: 91 ELNELKEQVKELEDTFNSSFDEIYVIDGKGITKRINKAGETNYGVPVENLLGKNVADLER 150 Query: 131 ----GFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGA-------- 178 + R + E + +G++ + P++ ++ V+ + Sbjct: 151 EGYYNPSVSRMVFREKKRITITQKTKSGKHLIATGNPIFDENGEIIRVVVNSRDISELLN 210 Query: 179 ----VVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITG 234 + + RQ +Q+ +++A SP+MK V+E K+A + + +LI G Sbjct: 211 LRKQLEDTEQLVESYRQQLLKLSQERIRSDELIARSPQMKKVIEMVDKVAQVDSTVLIMG 270 Query: 235 DTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGF 286 ++G GK + A H+ S RA P++ +NC +IPE +ESELFG+ EGKKG Sbjct: 271 ESGVGKGVIASRLHRLSRRAKGPFITINCGAIPEHLLESELFGYEGGAFTGARKEGKKGL 330 Query: 287 FEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVEL 346 E ANGG+V LDEI E+ +Q KLL+ + D RVG + VD+R + AT K++ + Sbjct: 331 LELANGGTVFLDEITELPLSLQVKLLQVIQDKKLIRVGGSKYISVDIRFVAATNKDIQRM 390 Query: 347 VQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTV 406 V +G+FREDLYYRLNV+ + +PPLR +DI L E F+ + + K + + Sbjct: 391 VAEGLFREDLYYRLNVIPVIIPPLRYRQEDIPVLLEYFLEKLNTKYEKN-KKFTPEAIEI 449 Query: 407 LTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDA--MEGSLDEI 464 L Y WPGNVR+L+N + R L +G E+ + ++ + L E Sbjct: 450 LRNYNWPGNVRELENLVERLLVTKEGNEITVSHLPEYIFEGKSRFPNRIYVLDICPLKEA 509 Query: 465 TSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKKNE 512 E+ + + Y +T K+A L ++ + + K+++Y L + Sbjct: 510 VEEMEKQLFSMAYNRLKNTYKVADALAINQSTVVRKIQKYNLLSRAER 557 >UniRef50_Q5WF71 Sigma-L-dependent transcriptional regulator n=2 Tax=Bacteria RepID=Q5WF71_BACSK Length = 657 Score = 517 bits (1334), Expect = e-145, Method: Composition-based stats. Identities = 140/474 (29%), Positives = 227/474 (47%), Gaps = 25/474 (5%) Query: 51 FSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASC 110 F + + VTD+R++ M L A++ + + + VD M NPA Sbjct: 192 FKDVTEATQLAEQVTDLRSIQTM--------LEAIINSSNDAISVVDENGTGLMVNPAYT 243 Query: 111 QLFGQKLDRLRNHTAA-QLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDE 169 +L G D++ A + G + + + + + + + + + Sbjct: 244 KLTGLDSDQIIGQPATADISEGESIHMQVLRTKKPVRGARLKLGPHKKDVIVNVAPVVVD 303 Query: 170 NDQHVLTGAVVMLRSTIRMGRQLQNVAAQ-----DVSAFSQIVAVSPKMKHVVEQAQKLA 224 + G + + R+ QLQ+ + +FS+IV S +M +EQA++ A Sbjct: 304 GELKGSIGVIHDVSELNRLSSQLQHAQKRLATLEATYSFSEIVGTSKEMAFAIEQAKRGA 363 Query: 225 MLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA----- 279 S P+L+ G+TGTGK+LFA+A H S R G+P++ +NCA++ E +ESELFG+ Sbjct: 364 KTSFPILLLGETGTGKELFAHAIHNESERKGQPFVRVNCAALTETLLESELFGYEQGAFS 423 Query: 280 ---PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVI 336 GKKG FE+A GS+ LDEIGEMSP QAKLLR L + RVG + + VRVI Sbjct: 424 GALKSGKKGLFEEAEHGSIFLDEIGEMSPNTQAKLLRVLQEQEIVRVGGTKPIPIHVRVI 483 Query: 337 CATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPR 396 AT +L +++ FREDLYYRLN L + +PPLR+ D+ L + + + + G Sbjct: 484 AATNVDLEGAIRERRFREDLYYRLNKLPIRIPPLRERLSDLPALIDHLLRKLNLDYGHNI 543 Query: 397 PKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLD--GYELRPQDILLPDYDAATVAVGE 454 ++ + + Y WPGNVR+L+N + R++ +D EL + + + Sbjct: 544 QSISKLVLSRFEGYYWPGNVRELENVLARSMIYMDLGATELTDVSLPQEFGQSGKREESD 603 Query: 455 DAMEGSLDEITSRFERSVLTQLY-RNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 L + E+ L + + AK LG+S ++ KL +Y L+ Sbjct: 604 ATAPKQLQAFLAEKEKEHLRRTLAEVDGVKTEAAKLLGISIRSLYYKLEKYNLA 657 Score = 73.1 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 20/142 (14%), Positives = 53/142 (37%), Gaps = 7/142 (4%) Query: 71 PWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLIN 130 + + ++ L + + A+ + ++ V+ ++V N A+ + G +L + L+ Sbjct: 86 KVLEAIKDDLLMKKAIHAIQDGMIVVNRFAQVQFMNEAAAHMAGVELAKAIGKPIQTLLP 145 Query: 131 GFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGR 190 R +E++ + + H NG + P+ +GA+ + + + Sbjct: 146 SSGLPRVIETQQPEYNQLHEFDNGTVIVTTRVPLIF-----GGACSGAIAVFKDVTEATQ 200 Query: 191 QLQNVA--AQDVSAFSQIVAVS 210 + V + I+ S Sbjct: 201 LAEQVTDLRSIQTMLEAIINSS 222 >UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Ammonifex degensii KC4 RepID=C9RBQ4_AMMDK Length = 470 Score = 517 bits (1334), Expect = e-145, Method: Composition-based stats. Identities = 136/420 (32%), Positives = 211/420 (50%), Gaps = 29/420 (6%) Query: 112 LFGQKLDRLRNHTAAQLI----NGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQ 167 L ++ + Q + G + + + +++ P+ Sbjct: 51 LLDIRMPEMDGIKVLQALREKHPGVPVILMTAYSDTQTTINAMRYGAFEYIV--KPI--- 105 Query: 168 DENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQ-IVAVSPKMKHVVEQAQKLAML 226 L + L + L V +++ ++ SP M+ V + ++A Sbjct: 106 ------NLDELLSTLEKATTVTEPLVTVGKGEIAPRPGTLIGCSPAMQEVYKTIGRIADS 159 Query: 227 SAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE----- 281 +LI G++GTGK+L A A H SPR GKP++ ++C +IPE+ +ESELFGH Sbjct: 160 DVTVLIQGESGTGKELVAEAIHYNSPRQGKPFVKIDCTAIPENLLESELFGHEKGAFTGA 219 Query: 282 --GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICAT 339 K G FE A+GG+V LDEIG++SP +QAKLLRFL + F RVG VDVR+I AT Sbjct: 220 HTRKLGKFELADGGTVFLDEIGDISPALQAKLLRFLQEKAFERVGGTETRRVDVRIIAAT 279 Query: 340 QKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKL 399 K+L E V+ G+FREDLYYRLNV+ + LPPLR+ +DIM L + FV+ + G L Sbjct: 280 NKDLEERVKSGLFREDLYYRLNVVEIKLPPLRERKEDIMLLVDYFVSLSNRKFGKQVTGL 339 Query: 400 AADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVA-----VGE 454 + +L +Y WPGNVR+L+N RA+ G + P+ + A E Sbjct: 340 TRSVADILLQYNWPGNVRELRNVCERAVLMARGNVITPESLPEYLLRAVRGRTEAWHPAE 399 Query: 455 DAMEGSLDEITSRFER-SVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKKNEE 513 D L E+ + ER ++L L + +A+ LG+S T + K++E G++ +N++ Sbjct: 400 DRGVLPLKEMVAEMERSAILRALEEYRGNKTAVARALGMSRTTLYAKMKELGIADPENKD 459 >UniRef50_Q8EMV1 Transcriptional regulator n=2 Tax=Bacillaceae RepID=Q8EMV1_OCEIH Length = 594 Score = 517 bits (1332), Expect = e-145, Method: Composition-based stats. Identities = 116/454 (25%), Positives = 204/454 (44%), Gaps = 34/454 (7%) Query: 83 SALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEP 142 +LE+ E V VD + N A + G H ++I N + +++ Sbjct: 145 EVILESAYEGVAMVDRNGIIVEFNDAYSRFTGVDKKEAIGHPVQEIIENTNLHQTVKTGI 204 Query: 143 QDSHNEHVVINGQNFLMEITPVYLQDENDQHV---LTGAVVMLRSTIRMGRQLQNVAAQD 199 + I GQ ++ PV+ +E + + V L ++ + + Sbjct: 205 AERGVIQY-IQGQPMVVHRIPVWRNEELVGAIGMLIFEGVTELYQIYDRYQEKKQKMITE 263 Query: 200 VSA-------------FSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYA 246 + QI+ S ++ + +K+A A +LITGD+GTGK+LFA + Sbjct: 264 KHSRKEDSNPGQPDNYLEQIIGQSEELTKLKRMTRKVAQTEATVLITGDSGTGKELFAKS 323 Query: 247 CHQASPRAGKPYLALNCASIPEDAVESELFGHAPEGKKGFF------------EQANGGS 294 HQ S P++ +NC +IPE ESELFG+ F + A+ G+ Sbjct: 324 IHQLSDYKSGPFVCVNCGAIPEQLFESELFGYEDGS----FTGAKRGGKKGKFKLADNGT 379 Query: 295 VLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFRE 354 + LDEIGEM MQ KLLR + + + +VG + + RV+ AT +NL +V++G FRE Sbjct: 380 LFLDEIGEMPLAMQTKLLRVIQEKEYEKVGGLTKQPLKARVVAATNRNLKVMVEEGTFRE 439 Query: 355 DLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPG 414 DLYYR+NV+ L +PPLR+ +DI L ++ + + + ++ + VL +Y W G Sbjct: 440 DLYYRINVIELYIPPLRNRERDIPLLISSYLLTICKKYNMKKKEITPEAMAVLMKYKWYG 499 Query: 415 NVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLT 474 N+R+L N I + + + + + + + + E ++ Sbjct: 500 NIRELINTIEKLVILTENDMIDYHHLPNYMKREEFTIDNRLSPIHQVKQQEHIRESELIR 559 Query: 475 -QLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 L + + K A++LG+ T + KL+++ + Sbjct: 560 LTLEQTGGNKSKAAQKLGIHRTTLYQKLKKFDME 593 >UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B8FJT8_DESAA Length = 464 Score = 517 bits (1332), Expect = e-145, Method: Composition-based stats. Identities = 121/413 (29%), Positives = 194/413 (46%), Gaps = 24/413 (5%) Query: 113 FGQKLDRLRN--HTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDEN 170 + L + E + + +++ Sbjct: 59 LNMPGMDGMGVLKHLQKHSQDTQCLVLTGFGSIRNSVEAIKMGAFDYIT--------KPV 110 Query: 171 DQHVLTGAVVMLRSTIRMGRQ--LQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSA 228 L +V R+ R+ + + F V SP+++ V E +K+A + Sbjct: 111 KFDELLHSVSTAIKFKRLERENTILKKQLKKKYRFENFVGDSPQIQRVFELIEKVADTDS 170 Query: 229 PLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPEG------ 282 +LITG++GTGK+L A A H SPR P + +NC +IPE+ +ESELFGH Sbjct: 171 TVLITGESGTGKELIARAIHYNSPRRDDPMVIINCGAIPEELLESELFGHEKGAFTGAHK 230 Query: 283 -KKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQK 341 + G FE ANGG++ LDEIG+MSP +Q KLLR + + F R+G +HVD+R++ AT K Sbjct: 231 TRIGRFEVANGGTIFLDEIGDMSPNLQVKLLRVIQEQAFERIGSTRTMHVDIRILAATNK 290 Query: 342 NLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAA 401 +L+E V+K FREDLYYRLNV+ + +PPLRD DI L + F+ + A E+ P +++ Sbjct: 291 DLMEAVEKKEFREDLYYRLNVIPIEVPPLRDRKSDIPLLIDFFINKLAAEKERPVKRISQ 350 Query: 402 DLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLP----DYDAATVAVGEDAM 457 L + WPGNVR+L+N + R L G + +D+ D + + Sbjct: 351 AAMNALMGHHWPGNVRELENVVERVLILSSGDTIDKEDLPATILGLDSKEPEAGLKLPSG 410 Query: 458 EGSLDEITSRFERSVL-TQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQK 509 D +E++++ L + AK L ++ T + K++ + Sbjct: 411 GIRFDHAVEEYEKNLIVQALEEANWVKTQAAKLLHINRTTLVEKMKRKNIRGP 463 >UniRef50_Q8R5U6 NtrC family Transcriptional regulator, ATPase domain protein n=4 Tax=Clostridia RepID=Q8R5U6_THETN Length = 592 Score = 517 bits (1332), Expect = e-145, Method: Composition-based stats. Identities = 132/491 (26%), Positives = 229/491 (46%), Gaps = 31/491 (6%) Query: 26 IDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSAL 85 I + G+ I ++F + E F + + + E L L Sbjct: 119 IGILGMSIFDKNT-KIDFLNKQ-EDFKNFEKRFSELITTKINEKKLGVMIEYRSSELMTL 176 Query: 86 LEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDS 145 + ++ E ++ +D +++V N + + L+ LE + + Sbjct: 177 INSINEGIIILDSQNRVVTVNKYLKEKLNVSEK----TPVKSIFP-VKLLQELEKKDFEG 231 Query: 146 HNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAA-QDVSAFS 204 V I G F++ +P+ ++ + G V++ +M + + ++ F Sbjct: 232 EVGPVEIKGIKFVINSSPIAVKGQR-----VGTVLVFSDFSKMQESVYKASKMSEIVTFD 286 Query: 205 QIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCA 264 IV S +K+ QA ++A P+L+ G++GTGK+LFA A H S R + ++ +NC Sbjct: 287 DIVGESDAIKYAKSQAIQIADSEVPVLLLGESGTGKELFARAIHFQSSRKNEIFMPINCG 346 Query: 265 SIPEDAVESELFGHAPE--------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLN 316 +IPE +ESELFG+ GK G FE A G++ LDEIG++ MQ KLLR L Sbjct: 347 AIPETLIESELFGYEKGSFTGANVTGKIGKFELAKDGTIFLDEIGDLPLSMQVKLLRALE 406 Query: 317 DGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQD 376 + R+G + V+ R+I AT K+L ++V +G FREDL+YRLNV+ + +PPLR+ D Sbjct: 407 EKEIVRIGGYTPIKVNPRIISATHKDLYQMVLEGKFREDLFYRLNVVPIVIPPLRERGYD 466 Query: 377 IMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELR 436 I+ L F+ +F G + + +L Y +PGN+R+L+N I A+ + Sbjct: 467 IIILANYFLEKFNKIYGKNIKGFSKESEKLLLSYPFPGNIRELRNLIEYAVNFESKDYIS 526 Query: 437 PQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYP----STRKLAKRLGV 492 P+ I + +L E+ +E++V+ + Y S + +AK+LG+ Sbjct: 527 PETI------NQRLHRKTLEEGKTLAEMVKNYEKNVIKEYMLRYGSDVESKKLIAKKLGI 580 Query: 493 SHTAIANKLRE 503 S + K+ E Sbjct: 581 SIATLYRKMAE 591 >UniRef50_B8FTG8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfitobacterium hafniense RepID=B8FTG8_DESHD Length = 680 Score = 516 bits (1331), Expect = e-145, Method: Composition-based stats. Identities = 130/475 (27%), Positives = 224/475 (47%), Gaps = 21/475 (4%) Query: 49 ESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPA 108 S + + +I DV + L +LE + E V++++ ++ +N Sbjct: 208 SSLAEAIGNQIKIQNSYDVLNQVNNDLRKATETLKIILEFIDEGVITIEPNGRILSSNHE 267 Query: 109 SCQLFGQKLDRLRNHTAAQLI-NGFNFLRWLESEPQDSHNEHVVING---QNFLMEITPV 164 ++ +R + + + ++ + + E V+NG + +L+ + PV Sbjct: 268 GSRILNVNHGEIRGRNIGEFLLPRSALMDYVADKKTVDYMEEYVVNGREEKQYLVSLRPV 327 Query: 165 YLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQ-DVSAFSQIVAVSPKMKHVVEQAQKL 223 Y Q ++ L A++ + ++ + + F IV S M A++ Sbjct: 328 YKQGNDE---LDFAILRFNHSDKINALVNTRSGAVAKFRFEDIVGQSEAMLKAKALARRF 384 Query: 224 AMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE-- 281 A +L+ G++GTGK+LFA A H S R G P++A+NCA++P + +ESELFG+ Sbjct: 385 ARTRENVLLLGESGTGKELFAQAIHN-SHRPGGPFIAVNCAAMPRNLIESELFGYESGSF 443 Query: 282 ------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRV 335 G+ G E ANGG++ LDEIG+M +QA LLR L D R+G + VD R+ Sbjct: 444 TGAEKNGRPGKIELANGGTLFLDEIGDMPIELQAVLLRVLQDKMVMRIGGRNYRQVDFRL 503 Query: 336 ICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVP 395 I AT ++L Q+ FREDLY+R++VL + +PPLR DI L E F+ +A G+P Sbjct: 504 ITATNQDLKLSAQERKFREDLYFRISVLNIEIPPLRSRGFDIAILAEHFIENYAKRVGLP 563 Query: 396 RPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGED 455 ++ + + Y WPGNVRQL+NA+ A+ + ++ + + T Sbjct: 564 AAVISPEAKRRILEYNWPGNVRQLENAMIYAVNLSEEGQIMLSHLPKELSEKRTALPMVS 623 Query: 456 AMEGSLDE---ITSRFERSVLTQLYRNYPSTRKLA-KRLGVSHTAIANKLREYGL 506 E E E+ + + ++ +A LG+S T + KL+E+ + Sbjct: 624 EKECDKPEELFSMKDLEKVTIKKALERAGNSVAIASDLLGISKTTLYRKLKEHNI 678 >UniRef50_B2A8I7 Putative sigma54 specific transcriptional regulator n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A8I7_NATTJ Length = 601 Score = 516 bits (1331), Expect = e-145, Method: Composition-based stats. Identities = 148/514 (28%), Positives = 259/514 (50%), Gaps = 32/514 (6%) Query: 15 RELLDLLVLRGID-----LRGIEIDPIGRIY-LNFAELEFESFSSLMAEIRRIAGVTDVR 68 +E +L ++ + GI + L +AE ++ SF M+E+ +A Sbjct: 97 QEKAHMLSPINLNGQVIAIIGITAFTESQKQDLTYAEEKYRSFIKKMSEL--LADSFSNE 154 Query: 69 TVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQL 128 + + + + +SA++ ++ E +L+VD ++V N A L + + Sbjct: 155 QI-ILEKTKAYAQVSAIVNSVYEGILAVDDYNEVIACNDAVRDLLDI-RGDIIGQNVENV 212 Query: 129 INGFNFLRWLESE-PQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIR 187 + F + + + H ++ G + L+ + P+ + ++ + GAV +R T Sbjct: 213 VPELPFEGVITTGTSKLGHEQYFSKVGIHCLVNMKPIKMNNK-----VVGAVATVRDTKE 267 Query: 188 MGRQLQNVAAQ-DVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYA 246 + + V+ +F+ I++ + +K + E+A+K++ + +LI G++GTGK+L+A A Sbjct: 268 IEKLAFRVSGNTAGFSFNAIISKNNNIKELKEKAKKVSQTDSTVLIRGESGTGKELYARA 327 Query: 247 CHQASPRAGKPYLALNCASIPEDAVESELFGHAPEG--------KKGFFEQANGGSVLLD 298 H ASPR P++ ++C +IPE +ESELFG+ K G FE A GG++ LD Sbjct: 328 IHSASPRWKGPFVPVHCGAIPETLLESELFGYESGAFTGAKKGGKIGKFELAEGGTIFLD 387 Query: 299 EIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYY 358 EIG+M +Q KLLR + DGTF R+G + +DVRV+ AT + L E ++K FR DL+Y Sbjct: 388 EIGDMPIHLQTKLLRVMQDGTFERIGSPETIKIDVRVLAATHQPLEEFIEKNKFRRDLFY 447 Query: 359 RLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQ 418 RLNV+ L +P LR+ +DI L F+ ++A++ +P L+ +L + L +Y+WPGNVR+ Sbjct: 448 RLNVVPLFIPALRERREDISLLLNHFLNKYANKLKREQPALSRELMSFLEQYSWPGNVRE 507 Query: 419 LKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEI--TSRFERSVLTQL 476 L+N + + L D+ D G DEI E+ + Sbjct: 508 LENVAEYFININEKGYLDLGDLPKNMKDKLLETQDYQKNVGD-DEILPLEELEKRSFEKA 566 Query: 477 YRNYP----STRKLAKRLGVSHTAIANKLREYGL 506 + Y + +A +LGVS + KL++YGL Sbjct: 567 VKIYGISEQGKQLMAGKLGVSRATVYRKLKKYGL 600 >UniRef50_C5ESD9 PAS modulated sigma54 specific transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ESD9_9FIRM Length = 474 Score = 516 bits (1330), Expect = e-145, Method: Composition-based stats. Identities = 139/457 (30%), Positives = 212/457 (46%), Gaps = 29/457 (6%) Query: 75 SEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNF 134 E + L +LE V+ +D K V N + KL++L + Sbjct: 23 KEWDAQILLEILENADNAVIVIDCKGTVVYINRFYAEHMNIKLEKLMGRNLYDIEPQAKL 82 Query: 135 LRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQN 194 LR +E ++E I N L D + V GA + + ++ + Sbjct: 83 LRVMEDGGGRDNDEVEYIKSLNIDSVGLAFPLYDSRKEKV--GACAIFKDVTQVVELTRK 140 Query: 195 VAAQDV---------------SAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTG 239 + +F ++ + ++ + A K+A + +LI G++G G Sbjct: 141 LQKSKEMVQYLASQLEASELPISFQSYISQNKDLQKTLSLAAKVANTNCTILIQGESGVG 200 Query: 240 KDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQAN 291 K++ A H AS R +P + +NCASIPE+ +ESELFG+ GK G FE AN Sbjct: 201 KEVMAKCIHNASNRKERPMIKVNCASIPENLLESELFGYEEGAFTGARKGGKLGKFELAN 260 Query: 292 GGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGM 351 G++LLDEIG+MS MQ+KLLR L + RVG + +DVRVI AT +NL E+V+K Sbjct: 261 KGTILLDEIGDMSLTMQSKLLRVLQEKELERVGGTKTIKLDVRVIAATNQNLEEMVEKNE 320 Query: 352 FREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYA 411 FR DLYYRL+V+ +++P LR +DIMPL F+ R ++G L +L Y Sbjct: 321 FRSDLYYRLHVVPIHIPALRCRREDIMPLVRYFIERNGGDEG---TDLTPGAARMLEEYG 377 Query: 412 WPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERS 471 WPGNVR+L+N I A+ G L +D + L + + E+S Sbjct: 378 WPGNVRELQNVIEYAMIVKTGDILEIKDFPQYLRGDGAEDGPAEDGPCRLKDAVEQLEKS 437 Query: 472 VLTQLY-RNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 ++ + RN + LG+S + KL +YGL Sbjct: 438 MIKRALKRNNGNKSMAINELGLSRRSFYEKLEKYGLK 474 >UniRef50_Q30XH6 Putative transcriptional regulator, Fis family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30XH6_DESDG Length = 589 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 134/522 (25%), Positives = 227/522 (43%), Gaps = 30/522 (5%) Query: 12 GLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVP 71 GLT + + ++ +E +G + ++ + R V D + Sbjct: 71 GLTMPFILITGEPSME-TAVEALALGADEYLYKPVDKDKLLLAAERWLRYKYVVDQKQRL 129 Query: 72 WMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLING 131 + L + A+P+ +++V V N A + G + + Sbjct: 130 EREKDELRRHLETVFNAVPDAIVTVSSGFTVLSVNEACRNILGMDTAAAGGQPCDKALGS 189 Query: 132 FNFLRWLESEPQDSHNEHVVING-------QNFLMEITPVYL-------QDENDQHVLTG 177 V G +++I+ V L + G Sbjct: 190 AAAECMPLLREAVRAGHIVQRGGVAVQHDRGEIIVDISAVPLACAATATEHSPGTDASGG 249 Query: 178 AVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTG 237 ++++R R+ + +AAQ + ++ S M+ V + LA +L+TG++G Sbjct: 250 VMLIVRDVTRLTGLERALAAQHIR--RSMIGRSSVMRGVFRLVESLADTDTTVLVTGESG 307 Query: 238 TGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQA 290 TGK+L A A H + RA P++ +NC+++ E +ESELFGH A + + G + A Sbjct: 308 TGKELVADALHHSGARAQGPFVKVNCSALSETLLESELFGHVRGAFTGATKDRTGRIQMA 367 Query: 291 NGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKG 350 +GG++ LDEIG++SP +Q KLLR L + RVGE V VDVRV+ AT K+L LV +G Sbjct: 368 HGGTLFLDEIGDISPSVQLKLLRVLQEKEIERVGEGRPVKVDVRVVAATNKSLRALVARG 427 Query: 351 MFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRY 410 FREDLYYRL V+ ++LP LR+ +DI L E F+ F + L + +L +Y Sbjct: 428 KFREDLYYRLKVVEVHLPALRERREDIPLLAEHFIEEFNEHFHRRVSGLDSSAQQLLVQY 487 Query: 411 AWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITS---- 466 WPGNVR+L++A+ A G + + + + + Sbjct: 488 DWPGNVRELRHAVEHAFIMAGGNVIPAAALPAELMQSGRFSAQSAGTGALRHDAPDAAAQ 547 Query: 467 --RFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 +++ + L + K A+ LG+S + +LRE G+ Sbjct: 548 GAEWKQRLSAALKETGGNKAKAARLLGISRQTMYRRLRELGM 589 >UniRef50_B7HB38 Sensory box sigma-54 dependent DNA-binding response regulator n=75 Tax=Bacillaceae RepID=B7HB38_BACC4 Length = 704 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 138/483 (28%), Positives = 232/483 (48%), Gaps = 39/483 (8%) Query: 48 FESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANP 107 F F + + VTD++ + + L A++ + E + VD K + + NP Sbjct: 227 FAIFKDITEVVDLAEEVTDLKEIQTL--------LEAIINSSEEAISVVDEKGRGLVINP 278 Query: 108 ASCQLFGQKLDRLRNHTAA-QLINGFNFLRWLESEPQDSHNEHVVINGQN--FLMEITPV 164 A +L G + + A ++ G + + + H+ I + ++ + PV Sbjct: 279 AYTKLTGLTEEDIIGKPATTDIVEGESMHMKVLRTRRAVRGIHMKIGQKKRDVIVNVAPV 338 Query: 165 YLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAA--------QDVSAFSQIVAVSPKMKHV 216 + +L G+V ++R + + + + +F IV S + Sbjct: 339 IVDG-----ILKGSVGVIRDVSEIQKLTNELNRARQIIRTLEAKYSFDDIVGNSDETTAA 393 Query: 217 VEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELF 276 +EQA+ A A +L+ G++GTGK+LFA+A H S R ++ +NCA+I E +ESELF Sbjct: 394 IEQAKLGANTPATVLLRGESGTGKELFAHAIHNGSNRKYNKFVRVNCAAISETLLESELF 453 Query: 277 GHAPE--------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHE 328 G+ GK+GFFE+AN GS+ LDEIGE+S QAKLLR L + +VG Sbjct: 454 GYEEGAFSGAKRGGKRGFFEEANNGSIFLDEIGELSANTQAKLLRVLQEKEIVKVGGTKA 513 Query: 329 VHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARF 388 + ++VRVI AT NL + + +G FREDLYYRLN + + +P LR DI + + + + Sbjct: 514 IPINVRVIAATHVNLEKAILEGKFREDLYYRLNKIPIQIPSLRQRKGDIPTIADRLIQKI 573 Query: 389 ADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYE--LRPQDILL---- 442 + G L L Y WPGNVR+L+N + RA+ ++ E + + Sbjct: 574 NQDYGRNVEGLTDSAILYLQSYEWPGNVRELENILGRAIIFMNYNETYIDVHHLPPLHNE 633 Query: 443 PDYDAATVAVGEDAMEGSLDEITSRFERSVLTQ-LYRNYPSTRKLAKRLGVSHTAIANKL 501 ++ + + E L+ + + FE +++ + L R + + AK LG+S + KL Sbjct: 634 EQVESKQSHLLPELEEKPLEHLVTEFEGNIIHEYLERFDGNKTQTAKALGISVRNLYYKL 693 Query: 502 REY 504 +Y Sbjct: 694 EKY 696 Score = 98.5 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 30/219 (13%), Positives = 85/219 (38%), Gaps = 9/219 (4%) Query: 3 LEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRRI- 61 L++ E + + + L + ID+ ++ ++ E + + + +I +I Sbjct: 56 LQIAKEYGIAIGESVTPFLSMH-IDVI-FDMTGEDDVHKVLLEKKKKDTLLIPGDIAKIV 113 Query: 62 AGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLR 121 G+ + E + +L + + ++ +D + +V + N ++ ++ G K + Sbjct: 114 TGLAHEKEGLIGRLEEQTQQGELILNSTHDGMIVIDREGQVRLFNKSAERIIGYKKEEAI 173 Query: 122 NHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVM 181 ++I LR + ++ + + E + NG+ + P+ + + GA + Sbjct: 174 GKYILEVIPTSKLLRIIRTKQIEVNYELTLENGKKIITTRIPILKEGGE----VQGAFAI 229 Query: 182 LRSTIRMGRQLQNVA--AQDVSAFSQIVAVSPKMKHVVE 218 + + + V + + I+ S + VV+ Sbjct: 230 FKDITEVVDLAEEVTDLKEIQTLLEAIINSSEEAISVVD 268 >UniRef50_A8S4D9 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S4D9_9CLOT Length = 645 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 138/491 (28%), Positives = 241/491 (49%), Gaps = 30/491 (6%) Query: 34 DPIGRIYLNFAEL-EFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLAL-SALLEALPE 91 + + R++++ ++ ++ M R I ER + S +L + Sbjct: 172 EALNRVHIHTKDIAIEQALKQAMDAARTIN------------MERARSKMTSTILNTSSD 219 Query: 92 PVLSVDMKSKVDMANPASCQLFGQKLD-RLRNHTAAQLINGFNFLRWLESEPQDSHNEHV 150 +++V + N + + F ++ + +E+ + E + Sbjct: 220 ALIAVSGSGLIQALNNQAYRTFQLSSQADYTGRPVEEVCPALKWKDVVETGRER--EEVI 277 Query: 151 VINGQNFLMEITPVYLQDENDQHVLTG--AVVMLRSTIRMGRQLQNVAAQDVSAFSQIVA 208 + E PV + ++ ++ + ++ + L +F I+ Sbjct: 278 QWKDRKLYTEYRPVLVDKMGKGAIIVARYTEQIIEAETKIRQSLAKQGLTAKYSFDDIIG 337 Query: 209 VSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPE 268 SP ++ + A++ + + + +LI G+TGTGK+LFA++ H+ S R+ +P++ALNCA++PE Sbjct: 338 SSPAIRENILMAKRYSRVDSNVLIVGETGTGKELFAHSIHRESRRSAEPFVALNCAALPE 397 Query: 269 DAVESELFGHAPE--------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTF 320 + +ESELFG+ P GK G FE A+ G++ LDEIGE+ +QAKLLR L + Sbjct: 398 NLLESELFGYEPGAFSGASKNGKTGLFELAHKGTIFLDEIGEIPISLQAKLLRVLQEREI 457 Query: 321 RRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPL 380 RR+G + VDVRVI AT N+ E +Q+G FR DLYYRLN+L + +PPLR+ DI + Sbjct: 458 RRIGSNRVQPVDVRVISATNINIEEKIQEGQFRADLYYRLNLLDITIPPLRERGDDIREM 517 Query: 381 TELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDI 440 + ++ RFA E G P P+L+ + ++T Y WPGNVR+L+N R + D E+ ++I Sbjct: 518 VDFYLTRFACEMGKPIPRLSKEAVDLMTHYGWPGNVRELRNICERLIVLSDTTEIGLREI 577 Query: 441 LLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANK 500 + G + D+ T + E ++ + + +AK LGVS T + Sbjct: 578 QM--LKIFRKKEGPLPGTQTPDKETDQPETGIVYANLKPRKKKQDIAKELGVSRTTLWR- 634 Query: 501 LREYGLSQKKN 511 + + QKK Sbjct: 635 MEKMAREQKKQ 645 >UniRef50_B4DAQ1 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAQ1_9BACT Length = 987 Score = 515 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 139/504 (27%), Positives = 225/504 (44%), Gaps = 52/504 (10%) Query: 57 EIRRIAGVTDVRTVPWMPSERE-------HLALSALLEALPEPVLSVDMKSKVDMANPAS 109 ++IA + + E L + P + ++ S AN A+ Sbjct: 483 AAQKIARLEQQKEEVTHELEETSKALDASEERFRDLFDEAPIAYVHEELDSHFIRANRAA 542 Query: 110 CQLFGQKLDRLRNHTAAQLINGFN-----FLRWLESEPQDSHNEHVVINGQNFLMEITPV 164 ++ G K + + + ES + + VV+ + P Sbjct: 543 IRILGIKPEDVPHTYGKTFAPDTPDAQRRMREAFESIGRGTDTSGVVLEMRRKD-NGKPF 601 Query: 165 YLQ-----DENDQHV------LTGAVVMLRSTIRMGRQLQNVAA--QDVSAFSQIVAVSP 211 ++Q D + ++ +T V+M + R+ Q + + F +IV SP Sbjct: 602 WIQWWSRPDPSGKYTRTMFLDITDRVLMEQDKARLEAQNTYLQEEIRSQHNFVEIVGNSP 661 Query: 212 KMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAV 271 + V+ Q ++A + +LI G+TGTGK+L A A H SPR +P + +NC +I V Sbjct: 662 SLLQVLRQVDRVASTDSTVLICGETGTGKELIARAIHDRSPRRERPLVKVNCGAISTGLV 721 Query: 272 ESELFGHAPEG-------KKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVG 324 ESELFGH ++G FE A+GG++ LDE+GE+ P Q KLLR L + F +G Sbjct: 722 ESELFGHVKGAFTGAIANREGRFELADGGTIFLDEVGELPPETQVKLLRVLQEQEFEPIG 781 Query: 325 EDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELF 384 V VDVRVI AT ++L +V++G FR DL+YRLNV+ L +PPLR DI LT F Sbjct: 782 STKTVKVDVRVIAATNRDLETMVREGKFRSDLFYRLNVVPLTMPPLRQRANDIPLLTMFF 841 Query: 385 VARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLP- 443 + +FA + G ++A + L +Y WPGN+R+L+N I RA+ G L + LP Sbjct: 842 LEKFARKLGKSLGQIAEETMARLCQYPWPGNIRELQNVIERAVVLSTGSLLTVEKGALPG 901 Query: 444 ------------------DYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRK 485 D +L+++ + SVL Q Sbjct: 902 ATGVMAQGPGWTPERAMIDAAEPLSTPLGATSGNALEDVERQHIASVLQQTNWRIEGANG 961 Query: 486 LAKRLGVSHTAIANKLREYGLSQK 509 AK L + + + +++++ G+ + Sbjct: 962 AAKILNLQPSTLRSRMQKLGIVRP 985 >UniRef50_Q5WE88 Transcriptional activator of the acetoin dehydrogenase operon n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WE88_BACSK Length = 647 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 157/480 (32%), Positives = 241/480 (50%), Gaps = 39/480 (8%) Query: 42 NFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSK 101 N +++ S +AE + +A + + + R HL L LE + VLSVD+ + Sbjct: 193 NASDVHRHSIGYALAEAKNMA--LSLERHFFEYALRHHLFLHTALEKMDHIVLSVDLSDQ 250 Query: 102 VDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVIN--GQNFLM 159 + N + + + + + A + + + Q NE + + + + Sbjct: 251 ILTRNEGANRSERFQNE----TSIASFPELKALVANVRTNGQQIVNEQIQDGSTNKRYQV 306 Query: 160 EITPVYLQDENDQHVLTGAVVMLRSTIRM--GRQLQNVAAQDVSAFSQIVAVSPKMKHVV 217 I PV QD + G V+ L+ R+ ++ A +FS +V VSP + ++ Sbjct: 307 SIYPVRFQDH-----IYGVVIFLQQDQRVVNKKKPSPRKATTRYSFSNMVGVSPTFQALL 361 Query: 218 EQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFG 277 +QA+K A L + +LI+G+TGTGK++ A A HQAS R GKP++A+NC ++P +ESEL G Sbjct: 362 KQAEKAASLQSTILISGETGTGKEVLAQAIHQASNRGGKPFVAINCGAVPPSLLESELSG 421 Query: 278 HAPE--------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEV 329 + G G FEQANGG++ LDEIG+M +Q LLR L + R+G + Sbjct: 422 YEAGAFTGSKAKGSAGKFEQANGGTIFLDEIGDMPLDLQVHLLRILEERVVTRIGGSVPI 481 Query: 330 HVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFA 389 VDVRVI AT K+L E VQKG FREDLYYRL VL + LPPLR+ +DI L + F+ Sbjct: 482 PVDVRVISATNKDLKEAVQKGTFREDLYYRLCVLQMELPPLRERSEDIPVLIQSFLPALC 541 Query: 390 DEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAAT 449 E G L + T+L RY WPGN+R+LKN + +A+ +DG + P + Y Sbjct: 542 QEFGKQMISLTRETLTILERYHWPGNIRELKNVLQQAMFVMDGDVIHPHHLPDSFYSQTQ 601 Query: 450 VAVGEDAMEGSLDEITSRFERS-VLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQ 508 +E+ +L L + + K A L +S I +L++Y L + Sbjct: 602 S---------------DEYEKQKLLRALEQQEGNVTKAAASLNMSRATIYRRLKKYRLER 646 >UniRef50_A0RFE6 Sensory box sigma-54 dependent DNA-binding response regulator n=18 Tax=Bacillus cereus group RepID=A0RFE6_BACAH Length = 579 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 126/479 (26%), Positives = 219/479 (45%), Gaps = 34/479 (7%) Query: 62 AGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQK-LDRL 120 + + + E + L L E +L V+ + V+ + + + G + Sbjct: 102 IAILERKGKSIQSLESIISRYESALNLLSECILGVNEQGIVNFLSGSYAKFLGIDDPNEA 161 Query: 121 RNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHV------ 174 +++ +++ + + I+ +N + P+ + + Sbjct: 162 VGKHCTEVVENTRMHIIVKTGQTEIGHIQ-RISNRNIIATRIPIVKDGKIIGAIGKIMFH 220 Query: 175 -------LTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLS 227 L + + S + + + +F I+ S KMK V A K++ Sbjct: 221 DIQQFKALGDQISEMESKLSYYQTELQRLQEGRLSFQSIIGESAKMKEVKMMALKVSKSR 280 Query: 228 APLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPEG----- 282 + +LI G++GTGK+LFA+A H+ASPRA ++ LNCA+IP D +E+ELFG+ Sbjct: 281 STVLIRGESGTGKELFAHAVHRASPRASGTFIRLNCAAIPRDLLEAELFGYEEGAFTGAK 340 Query: 283 ---KKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICAT 339 K G E A G++ LDEIG+MS MQ KLLR L + R+G VDVR I AT Sbjct: 341 KGGKPGKIELAEKGTLFLDEIGDMSLDMQVKLLRVLQEKEIERIGGTKIQKVDVRFIAAT 400 Query: 340 QKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKL 399 +NL E+VQ+G FREDLYYRLNV + +PPLR+ +D++ +TE + + E G Sbjct: 401 HRNLREMVQRGEFREDLYYRLNVFEIAIPPLRERKEDMIHITEFLIKKLNGELGSNVISF 460 Query: 400 AADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAV------- 452 + + + WPGN+R+L+N + RA+ ++G ++ + Sbjct: 461 DERVREIFMEHDWPGNIRELENVLERAMNVIEGMIIQVHHLPAYLRKKDKEEELYHDIFT 520 Query: 453 ---GEDAMEGSLDEITSRFERSVL-TQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 ++ E SL E+ + L + + ++ A+ LG+ ++ K+ +Y +S Sbjct: 521 IDQKQNEGEYSLQAEVESAEKRAITRALEKTAGNIKEAARLLGIHRASLYRKIEKYEIS 579 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 12/113 (10%), Positives = 40/113 (35%), Gaps = 7/113 (6%) Query: 86 LEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDS 145 L+ + + + + +N C + +K + + +I + + ++ Sbjct: 16 LQVMNNGIAVISHDGIITYSNKLFCSMLHKKETEIIGEHISTIIPDRK--KLVVNQNDSL 73 Query: 146 HNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQ 198 + Q ++ VY D G++ +L + + L+++ ++ Sbjct: 74 YRYECKSGNQVVIVNECRVYKDGTED-----GSIAILERKGKSIQSLESIISR 121 >UniRef50_Q5WJF2 Transcriptional regulator n=2 Tax=Bacillus RepID=Q5WJF2_BACSK Length = 511 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 131/465 (28%), Positives = 224/465 (48%), Gaps = 37/465 (7%) Query: 67 VRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAA 126 + V +R + L ++EA+ + V VD + ++ N S QL+ + Sbjct: 59 LANVLLEELKRTNAFLQTMMEAMDDAVTMVDEEQRIIQINAKSEQLYALTSCAIAGKPLR 118 Query: 127 QLINGFNFL--RWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRS 184 + + ++ + H + G + ++ PV+ + G + + R Sbjct: 119 DYFDEEALVLWSVMKDKQPVVHQYNQPKPGLHVIVNTVPVF-----EGEACVGGLSIERD 173 Query: 185 TIRMGRQLQNVAAQ-----------DVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLIT 233 + R + ++++ + F +I+ S ++ + A K+A +A +LIT Sbjct: 174 ITDVVRLNEELSSKTASLHHLNTTSEDEPFQKIIGRSEPIRRAIHLAAKVAKTTANVLIT 233 Query: 234 GDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPEGKKGFF------ 287 G++G GK+LFA HQAS RA KP++A+NC +IP ESELFG+ +G F Sbjct: 234 GESGVGKELFAEGIHQASDRAEKPFIAINCGAIPAALFESELFGYV----QGAFTGAAKG 289 Query: 288 ------EQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQK 341 + A GG++ LDE+GEM +Q KLLR L + + RVG + +DVR++ AT + Sbjct: 290 GKKGKLDAAKGGTLFLDEVGEMPAELQVKLLRVLEERAYYRVGGHEAIPLDVRIVAATNR 349 Query: 342 NLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAA 401 +L ++V +G FRED YYRL+V+++++PPLR+ +D+ L + F+ FA P PKL Sbjct: 350 DLEKMVAEGRFREDFYYRLHVISISIPPLRERIEDLPELVQSFLQEFAQRYEKPVPKLDP 409 Query: 402 DLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSL 461 ++ L W GN+RQL+N I R + +E LP+ + A + Sbjct: 410 EVLYALRTQKWEGNIRQLRNLIERIVILNGDHEGSVHWYHLPESYQQKLKHMPLASKDKP 469 Query: 462 DEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 + ++ L + Y + AK LG+S + NKL+ Y L Sbjct: 470 KKDERM---EIINALEKTYGNKSAAAKLLGISRATLYNKLKHYKL 511 >UniRef50_B3E3G2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfuromonadales RepID=B3E3G2_GEOLS Length = 557 Score = 514 bits (1324), Expect = e-144, Method: Composition-based stats. Identities = 113/447 (25%), Positives = 212/447 (47%), Gaps = 25/447 (5%) Query: 77 REHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLING----- 131 R + A+++++ + + +VD + N A+ ++ G ++ Sbjct: 120 RSMKRIYAIMDSVADGLFTVDEGMHITHFNKAAEEITGVSAQEAIGRPCYEIFKSEACTG 179 Query: 132 -FNFLRWLESEPQDSHNEHVV-INGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMG 189 + + + + G+ L+ ++ L D + G V +R + Sbjct: 180 ACPMVEAIATGQSIQREVEISDRKGRKKLISVSASTLYDAAG--NVMGGVETVRDLTPIT 237 Query: 190 RQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQ 249 + + ++ +F +V+ +P M+ + + + +A +A + + G++GTGK+LFA A H Sbjct: 238 AIKEEI--REKYSFRSLVSRNPAMRRLFDVMEDIAASNATVFLNGESGTGKELFARAIHD 295 Query: 250 ASPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGE 302 SPR P + +NC ++PE +ESE+FG A E + G E NGG+ LDEIG+ Sbjct: 296 LSPRREGPMVIVNCGALPETLLESEIFGVRKGAFTGATENRPGRLELCNGGTFFLDEIGD 355 Query: 303 MSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNV 362 + +Q KLLR L + F+ +G + DVR I AT +NL E+V +G FR+DLY+R+N+ Sbjct: 356 LPLPLQVKLLRVLENHEFQPLGARSPIKADVRFITATHRNLEEMVAEGTFRQDLYFRINI 415 Query: 363 LTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNA 422 +TLN+PPLRD +DI L ++ + RF ++ ++ +L +++PGNVR+L N Sbjct: 416 VTLNIPPLRDRREDIPLLVDMALQRFNLTYNKKVRSVSPEVLKLLLTHSFPGNVRELLNL 475 Query: 423 IYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNY-P 481 I +++ G E+ + + G + L L Y Sbjct: 476 IEQSVILCRGTEITLDHLPTNFLGQSHEQAQNTRRSGKIPTAAD------LNALLSRYSG 529 Query: 482 STRKLAKRLGVSHTAIANKLREYGLSQ 508 + ++A+ L + T + ++ G+ + Sbjct: 530 NRAEVARELNIDRTTLWRWMKRLGVKE 556 Score = 73.8 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 46/119 (38%), Gaps = 6/119 (5%) Query: 77 REHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLI------N 130 + S +++++ + V +VD V N A+ + G K ++ N Sbjct: 8 EQLKYFSHIMDSVADGVFTVDRDMHVIAFNRAAELMTGIKRADAVGRPCHEIFRTSVCDN 67 Query: 131 GFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMG 189 G ++ ++ E + N ++ L+ ++ +D+ G V LRS R+ Sbjct: 68 GCPVREAMKKGKPVTNREVTIKNAEDKLIPVSVSASILYDDEGNPIGGVETLRSMKRIY 126 >UniRef50_A4IPD5 Transcriptional regulator n=6 Tax=Geobacillus RepID=A4IPD5_GEOTN Length = 464 Score = 513 bits (1323), Expect = e-144, Method: Composition-based stats. Identities = 127/458 (27%), Positives = 219/458 (47%), Gaps = 27/458 (5%) Query: 79 HLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWL 138 L L A+L++ + ++ D V A+P ++G+ + L + QL F + Sbjct: 9 ELELDAILKSSTDNIVITDENGIVLRASPNCLSIYGKDVSYLVGKSVYQLEKENIFCPSV 68 Query: 139 ----ESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQN 194 E ++ G+ + PV+ Q V++ + L R+ + Sbjct: 69 TARVLREKKEVQLMQQTTTGRVVMATGVPVFDQQNCIVRVISFS-HDLTELERLKEDYEK 127 Query: 195 VAAQDVSAF--------SQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYA 246 + Q IV S M+ V + +++A A +L G++G GK++FA Sbjct: 128 LRKQMEHYQTEIEELKPQNIVIQSKAMERVWKLVRRVAQSDATVLFLGESGVGKNVFARF 187 Query: 247 CHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGFFEQANGGSVLLD 298 H +S R +P++ +NC++IPE ESE+FG+ GK G E A+ G++ LD Sbjct: 188 LHLSSSRRNEPFIEVNCSAIPESLFESEMFGYEKGSFTGAQKTGKPGLIELADQGTLFLD 247 Query: 299 EIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYY 358 EIGE+ MQAKLL+ L + RVG E VD R+I +T +NL E+V++G+FR+DL+Y Sbjct: 248 EIGELPLSMQAKLLKVLQEKKMIRVGGVKERTVDFRLIASTNRNLEEMVKQGIFRQDLFY 307 Query: 359 RLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQ 418 RL+V+ + +P LR+ +DI L + F+ + + + + L Y WPGNVR+ Sbjct: 308 RLHVIPIYVPSLRERKEDIFMLAQYFLEKCNQKYHMD-KYFHPSIVDHLVHYHWPGNVRE 366 Query: 419 LKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGED-----AMEGSLDEITSRFERSVL 473 L+N I R + + + P+ + + VA + +L E + ER L Sbjct: 367 LENMIERLVITSETKAIYPEYLPFSIQKHSKVAATPSLAEKRSEPSTLKEAVEQVERQWL 426 Query: 474 TQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKKN 511 + + +T ++A LG+S + KL+++ + K N Sbjct: 427 LRAAQQCKTTYEMADYLGISQPTVVRKLKKHRIDSKMN 464 >UniRef50_Q0AVD1 Putative uncharacterized protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AVD1_SYNWW Length = 554 Score = 513 bits (1323), Expect = e-144, Method: Composition-based stats. Identities = 133/440 (30%), Positives = 211/440 (47%), Gaps = 11/440 (2%) Query: 78 EHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRW 137 + L++LL+ E + D + + +N F N + LI N + Sbjct: 115 KEYQLNSLLQTPYEGIAVFDKNAHLLYSNEVCRGFFPCNSSSELNQKMSALIPWTNLQQA 174 Query: 138 LESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAA 197 ++ E + +GQ + P+ + + ++ + V L + L+ Sbjct: 175 IDRGK-TFSTEVLSPDGQALRLVFLPIMRHNRSLGVIVKSSQVELSRINEWEQLLEQYQQ 233 Query: 198 -QDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGK 256 + + IV + + A + A + +LITG++GTGK++FA+A H SPR Sbjct: 234 GTARYSINNIVGNNQLICEQKALAARAARSVSTVLITGESGTGKEIFAHAIHNMSPRRKG 293 Query: 257 PYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQ 308 ++ +NCA++PE +ESELFG+ EGK G FE AN G++ LDEI +MS MQ Sbjct: 294 SFVKVNCAAVPETLLESELFGYNEGAFTGALKEGKPGKFELANHGTIFLDEIADMSLSMQ 353 Query: 309 AKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLP 368 AKLLR L + R+G V++RVI AT +NL ELV + FREDL+YRLNV+ LNL Sbjct: 354 AKLLRVLQEKEVERIGSLSSTKVNIRVIAATNQNLAELVSENKFREDLFYRLNVIVLNLL 413 Query: 369 PLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALT 428 PLR DI L+ + R E G K+ ++ Y WPGN+R+L+N I RA+ Sbjct: 414 PLRQRVDDIPLLSHHLLHRLNQELGTRVEKINPEVIQSFCSYDWPGNIRELENTIERAVN 473 Query: 429 QLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYR-NYPSTRKLA 487 +G + DI SLD I + E++++ ++ + + K A Sbjct: 474 FCEGNTITINDIPDNIIQRKNHYSSTTGSHSSLDNILGKQEKALIEEVLKNCGGNKSKAA 533 Query: 488 KRLGVSHTAIANKLREYGLS 507 K L + + + KL +Y + Sbjct: 534 KTLNIHRSVLYRKLHKYDIK 553 Score = 59.2 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 13/89 (14%), Positives = 31/89 (34%), Gaps = 1/89 (1%) Query: 73 MPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGF 132 + L L +L+ + E +L D + N + ++ G +++ L Sbjct: 5 LELHSHDLLLYPILQNIDEGILITDTSLNIIFCNENAGKILGLNPNQILGQNVDCLKPHL 64 Query: 133 NFLRWLESEPQDSHNEHVVINGQNFLMEI 161 F ++ + + + V IN + Sbjct: 65 TFDNIIKDQRRIVKDIKV-INEDEVNVTR 92 >UniRef50_A6LJ55 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Thermotogaceae RepID=A6LJ55_THEM4 Length = 564 Score = 513 bits (1322), Expect = e-144, Method: Composition-based stats. Identities = 136/498 (27%), Positives = 237/498 (47%), Gaps = 24/498 (4%) Query: 32 EIDPIGRIYLNFAELEFES----FSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLE 87 E+ +G + + + +A R I + + + L A+++ Sbjct: 71 EVQNVGENIIITSRMPLTDECGNILGAVAVFRDITSMRKLAE-EITNLHQIEARLKAIID 129 Query: 88 ALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAA-QLINGFNFLRWLESEPQDSH 146 + + + D + + N A ++ G K + + A + G + + + Sbjct: 130 STYDAISVADENGYIVLVNKAYTKITGLKPEEVIGKPATVDIAEGESIHMKVARTKKPIF 189 Query: 147 NEHVVIN--GQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAA-----QD 199 N + + + ++ P+ ++ + V V + + + R+L V + Sbjct: 190 NARLKVGPLKREVIVNAMPLIVRGKFSGSV--AVVHDVSEILELTRELNEVKRYIRQLKA 247 Query: 200 VSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYL 259 F I+ S K+ EQA+K+A A + + G++GTGK+LFA+A H S R P++ Sbjct: 248 QYTFDDIIGKSEKLLIAKEQAKKVAKTPATVFLRGESGTGKELFAHAIHNESNRKNNPFV 307 Query: 260 ALNCASIPEDAVESELFGHAPE--GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLND 317 +NCA+IPE+ +E ELFG+ + G+KG E+A GG++ LDEIG+M +QAK+LRF+ + Sbjct: 308 TVNCAAIPENMLEIELFGYTKDTFGQKGLIEEAEGGTLFLDEIGKMPISVQAKILRFIEN 367 Query: 318 GTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDI 377 F +G + V+VR+I +T N+ EL++K F DLYYRLNV + +PPLR+ +DI Sbjct: 368 REFLPIGSNRVKKVNVRIIASTNMNIEELIRKEQFLIDLYYRLNVFPIYIPPLRERKEDI 427 Query: 378 MPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLD--GYEL 435 L + + + G + + L +Y WPGN+R+L+N I RA+ +D L Sbjct: 428 EELAKFLAKKIGRQYGRNVVDITDNAVEYLKKYDWPGNIRELENIIGRAIINMDIGETIL 487 Query: 436 RPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLT-QLYRNYPSTRKLAKRLGVSH 494 + I L + ++ EGSL + FER ++ L N AK+L +S Sbjct: 488 DKRHIPLLFLENNSILKK----EGSLRSMVEDFERKMIESSLKENNGDRTLTAKKLKISL 543 Query: 495 TAIANKLREYGLSQKKNE 512 + K+ YGL +K Sbjct: 544 RTLYYKMERYGLLKKGER 561 Score = 77.3 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 43/114 (37%), Gaps = 6/114 (5%) Query: 83 SALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEP 142 +LE++ E V+ VD +K+ N + + K + A +I +++ Sbjct: 8 RTVLESIIEGVIIVDKDAKILYINKRAMHILKLK-EGFIGKHVADVIPNTRLHIVVQTGV 66 Query: 143 QDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVA 196 + +E + + P+ ++ + GAV + R M + + + Sbjct: 67 PEV-DEVQNVGENIIITSRMPL----TDECGNILGAVAVFRDITSMRKLAEEIT 115 >UniRef50_A4J8D6 Putative PAS/PAC sensor protein n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J8D6_DESRM Length = 591 Score = 513 bits (1322), Expect = e-144, Method: Composition-based stats. Identities = 127/526 (24%), Positives = 252/526 (47%), Gaps = 28/526 (5%) Query: 7 CEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTD 66 R+ + + ++ I PI R+ + + + + + I ++ + Sbjct: 72 FATRVDVVMDRNLQIIDEDTCFSEICHKPIDRLVIFNQKQKLTGVLTRIDLINKVHRALE 131 Query: 67 VRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAA 126 + + L +++EA + ++ VD + V M N + +L D + Sbjct: 132 NTEDKLAEAFETNQRLRSIIEASYDGIIVVDSQGVVQMVNSSYFRLQDSSHDPA-GTSLE 190 Query: 127 QLINGF--NFLRWLESEPQDSHNEHVVINGQ---NFLMEITPVYLQDENDQHVLTGAVVM 181 Q+ + ++ + Q G+ + +P+ +DQ+ V+ Sbjct: 191 QIPLDCHDDVIKVFQEVMQQGKVAFARYQGENLSELTITGSPIL----DDQNSPVHVVIS 246 Query: 182 LRSTIRMGRQL-------QNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITG 234 L + + + + + ++ M+ VV++A +++ + + +LITG Sbjct: 247 LHDFTELNQLRLQSARYSEELKSLRTKNQKDLIFHDTAMERVVKKALRVSEVDSTVLITG 306 Query: 235 DTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGF 286 ++G GK++ A H+ SPRA P++ +NC +IPE +ESELFG+ GK G Sbjct: 307 ESGVGKEVIARTIHRNSPRAEGPFIEINCGAIPEHLLESELFGYEKGAFTGANKEGKPGM 366 Query: 287 FEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVEL 346 E ANGG++LLDE+G++ +Q KLLR L + R+G V ++VR++ AT KNL ++ Sbjct: 367 MELANGGTLLLDEVGDLPLNLQVKLLRALQEQEIYRIGGRTAVKLNVRILAATNKNLEQM 426 Query: 347 VQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTV 406 + + FREDL+YRLNV+ +++PPLR+ DI+PL+ F+ +F ++ R ++++ + Sbjct: 427 IAEKKFREDLFYRLNVVPIHIPPLRERKSDILPLSMHFLEKFNNKYNFHRL-FSSEVFKL 485 Query: 407 LTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAME--GSLDEI 464 +Y WPGN+R+L N + R + + + P + + + + + +++ L E Sbjct: 486 FEQYPWPGNIRELANLVERLIIMSEQETIYPDQLPPTFFGKPSTSPLQISIDEIIPLKEA 545 Query: 465 TSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKK 510 + E ++ + + Y S R+ LGV+H+ + K R G+S ++ Sbjct: 546 REQVESELIVKALKQYRSLRRAGDALGVAHSTLLRKARALGISVEE 591 >UniRef50_A8RIT6 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RIT6_9CLOT Length = 639 Score = 512 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 140/497 (28%), Positives = 242/497 (48%), Gaps = 35/497 (7%) Query: 33 IDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHL-ALSALLEALPE 91 I R+ E+ + + E VRTV + ERE + + + + Sbjct: 158 ICSQRRLPSVTIRTGNEAITRALDEA--------VRTVDVVRMERERSAMFTTITQTAMD 209 Query: 92 PVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLIN--GFNFLRWLESEPQDSHNEH 149 VL VD++ + + NPA+ +++ +L+ + + + + N+ Sbjct: 210 GVLYVDIQQTIKICNPAALKMYTGPKKKLQGLSLQSAFPFLSEPVSTVISTG-TELPNQL 268 Query: 150 VVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQ-------DVSA 202 + I PV + +TG VV + ++ + + + Sbjct: 269 IRWKNYTINATIHPVIIN-----SRITGIVVTFQDVTQIQQVEIQIRKKMTDKGLNAHYH 323 Query: 203 FSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALN 262 F+ I+ SP++ +V+E+A+K A +S+ +LI G+TGTGK+LFA + H AS R P++A+N Sbjct: 324 FNDIIHESPEIDYVIEKAKKFASVSSNILIEGETGTGKELFAQSIHNASTRCNGPFVAVN 383 Query: 263 CASIPEDAVESELFGH--------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRF 314 CA++PE+ +ESELFG+ A GK G FE A+ G++ LDEI E+ +Q KLLR Sbjct: 384 CAALPENLLESELFGYVEGAFTGTAKGGKTGLFELAHKGTLFLDEISEIPLSIQGKLLRV 443 Query: 315 LNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCP 374 L + RRVG D + VDVR+I AT +L + ++G FR+DL YRLNVL L LPPLR Sbjct: 444 LQEHEVRRVGGDRVISVDVRIIAATNHSLSRITEQGRFRQDLLYRLNVLKLFLPPLRRRC 503 Query: 375 QDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQL-DGY 433 D L ++ + + G P +A +L+ Y +PGN+R+L+N R + D Sbjct: 504 GDTKILFLHYLNLYYRQLGRIIPHVATAAIQMLSDYHFPGNIRELRNVTERLVVICMDKE 563 Query: 434 ELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERS-VLTQLYRNYPSTRKLAKRLGV 492 E+ D+ + V + + + ER ++ L + + A++LG+ Sbjct: 564 EITADDMR-EALHPEELPVKFQSTDMPIPPFYQDGEREFLIRILEESNYNQTLTAEKLGI 622 Query: 493 SHTAIANKLREYGLSQK 509 + T + +++++G+ + Sbjct: 623 NRTTLWRRMKKHGIRRP 639 >UniRef50_A8MFU8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=A8MFU8_ALKOO Length = 469 Score = 512 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 126/464 (27%), Positives = 225/464 (48%), Gaps = 29/464 (6%) Query: 75 SEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNF 134 +R +L + + VD + V N C G + + + I+ Sbjct: 5 LDRYKYIFDEILTMTDDGFIVVDREGVVTDINDQYCDFLGTSKENVIGRNIKETISNSKM 64 Query: 135 LRWLESEPQDSHNEHVVINGQN-------FLMEITPVYLQDENDQHVLTGAVVMLR---- 183 + +++ ++ H ++G+ L+ + V+ + + + L+ Sbjct: 65 IDIMKNACREEGAIHKFVDGETKEVDNKFLLVSRSCVFDEKQEVIASVAQVKFRLQTLDC 124 Query: 184 --------STIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGD 235 S + R+ N + + F ++ +S + + + + A S P+L+TG+ Sbjct: 125 AQKLMKEYSALEFYREEYNKISTNQYTFDGMIGISKRFLGIKKMGMRAAKNSFPVLLTGE 184 Query: 236 TGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPEG--------KKGFF 287 TGTGK++FA A H S R+ KP +++NC +IP + +ESELFG+ K G F Sbjct: 185 TGTGKEVFARAIHNGSDRSSKPMVSINCGAIPSELLESELFGYEEGSFTGAKKGGKIGKF 244 Query: 288 EQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELV 347 QA+GG++ LDEIG+M P MQ KLLR L + ++G V VD+RVI AT++NLV++V Sbjct: 245 IQADGGTIFLDEIGDMPPDMQVKLLRVLQEKEVDKIGGTEPVSVDIRVIAATRQNLVKMV 304 Query: 348 QKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVL 407 ++G FREDLYYRLNV+ + + PLR+ +DI+ F+ + E L+ ++ Sbjct: 305 REGKFREDLYYRLNVINIEMIPLRERREDILIFANYFLNKINIEY-KTNTTLSKEVKRCF 363 Query: 408 TRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSR 467 Y+WPGN+R+L N I + D + ++ D+ + V + E L + Sbjct: 364 QGYSWPGNIRELDNVIRSSYASCDEFIIQLTDLPAKMVSSHNVNSFSGSGEKMLKNMVDS 423 Query: 468 FERSVLTQ-LYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKK 510 +E S++ + L + + + A LG+ + + K+ ++G+ KK Sbjct: 424 YESSIIKEVLKKCNWNCQLTANELGIHRSLLYKKMDKFGIKVKK 467 >UniRef50_A6LV86 Sigma54 specific transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=A6LV86_CLOB8 Length = 590 Score = 512 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 123/515 (23%), Positives = 228/515 (44%), Gaps = 35/515 (6%) Query: 20 LLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREH 79 + + +++ + +GR+ + + + I + + ++ Sbjct: 76 ITINSEMNIEDVLKYNVGRLPVIDKNNKIIGIITHTDFINDLVEKISKKCRDIKNTKLGL 135 Query: 80 LALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLR--- 136 L +++E + + D ++ N A + G K + L + Sbjct: 136 TELDSIIECSYDGIYITDGEANTIKINNAYESITGLKRAEVLGRNMKDLEKEGVISQSAT 195 Query: 137 -WLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNV 195 + + + + G L+ P++ ++ + V +R ++ + + Sbjct: 196 LLVLKNRKTTTIQQEFKTGVKVLVSSNPIFDKNGK----IIMVVTNVRDVTQLYELKEQL 251 Query: 196 AAQDVSAF----------------SQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTG 239 S+IVA K +++ A ++A + +L+ G+TG G Sbjct: 252 QKNKEITLKYVSEIEEMRTQLLNTSEIVAEDHKTIEIIQLANRIAKVDTTILMLGETGAG 311 Query: 240 KDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGFFEQAN 291 KD A H+ S R+ K ++ +NC ++P +ESE FG+ GK G FE A+ Sbjct: 312 KDQIAKYIHKVSKRSKKQFIKVNCGAVPASLIESEFFGYEKGAFTGANKEGKIGLFEMAS 371 Query: 292 GGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGM 351 GG++ LDE+GE+ MQ KLLR L + R+G + +DVRV+ AT ++L ++++K Sbjct: 372 GGTIFLDEVGELPMDMQVKLLRVLQEMEVVRIGGTKPIKIDVRVLAATNRDLEDMIKKKQ 431 Query: 352 FREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYA 411 FREDLYYRLNV+ L +PPLR+ DI+PL F+ + + A+D + Y Sbjct: 432 FREDLYYRLNVIPLYIPPLRERKHDILPLINFFLTQLNKKYNFN-KIFASDALNCMYEYN 490 Query: 412 WPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAME--GSLDEITSRFE 469 WPGNVR+LKN + RA+ + +++ D+ + + V + E +L E E Sbjct: 491 WPGNVRELKNIVERAVIMSEDDKIKRSDLPKNIIGSNGMIVTLNTFEEGINLKETLDAIE 550 Query: 470 RSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREY 504 + ++ + Y Y + R AK LG+ + K ++Y Sbjct: 551 KKLIKKAYDKYGNVRAAAKSLGIDASTFVRKRQKY 585 >UniRef50_A6TVV8 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Alkaliphilus RepID=A6TVV8_ALKMQ Length = 470 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 138/474 (29%), Positives = 239/474 (50%), Gaps = 34/474 (7%) Query: 64 VTDVRTVPWMPSEREHLAL-------SALLEALPEPVLSVDMKSKVDMANPASCQLFGQK 116 + V SE + L LL+ ++ VD + ++ N +L G K Sbjct: 2 IMKQNEVEIESSEDQLQQLKDSLEMIEELLDNAYHGMVLVDHEGRIIKWN--YEKLMGIK 59 Query: 117 LDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPV------------ 164 + + ++I ++ ++ + I G + + P+ Sbjct: 60 EEEVLMRPVEEIIENTRLHIVAKTGEKELFDVQ-KIQGYDMITSRIPIVKDGRVIGAAGT 118 Query: 165 -YLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKL 223 +D + L + +L ST+ R + +F IV + +M ++ E A+K Sbjct: 119 VLFKDVKELESLVKRMKVLESTVDEYRGEIKRLHRAKYSFEHIVTQNRQMIYLKELARKA 178 Query: 224 AMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH----- 278 A ++ +LI G++GTGK+ FA+A H+AS R ++ +NCA+IP + +ESELFG+ Sbjct: 179 AESNSTVLIQGESGTGKEFFAHAIHRASLRRYGSFITINCAAIPNELLESELFGYDAGAF 238 Query: 279 ---APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRV 335 +GK G FE NGG+++LDEIG M MQAK+LR L F R+G + + +DVR+ Sbjct: 239 TGAKKQGKVGKFELGNGGTIVLDEIGAMPLEMQAKILRILESREFERIGGNDRIQLDVRI 298 Query: 336 ICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVP 395 I AT + L E +++G FR+DLYYRLNV+ + +PPLR+ +DI L + + + A + G+ Sbjct: 299 IAATNEPLEEAIKEGRFRQDLYYRLNVIPIEIPPLRERIEDIPILAQRILEKLAVDLGIE 358 Query: 396 RPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGED 455 +L + VL +Y WPGNVR+L+N + RAL + G + P+D+ P + + + Sbjct: 359 MKELTFETIEVLKKYQWPGNVRELRNTLERALNIVQGDMIYPEDL--PGHLIESSSKSSY 416 Query: 456 AMEGSLDEITSRFERSVLTQLYR-NYPSTRKLAKRLGVSHTAIANKLREYGLSQ 508 + L +I ++ E + R + + AK+LG+ TA+ K++ Y +++ Sbjct: 417 SHSLLLKDIMAKTEIEAIQSALRDSNGNKSVAAKQLGIHRTALYKKIQAYEMNK 470 >UniRef50_Q48G07 Transcriptional regulator PhhR n=28 Tax=cellular organisms RepID=Q48G07_PSE14 Length = 526 Score = 511 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 224/522 (42%), Positives = 319/522 (61%), Gaps = 15/522 (2%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEI--DPIGRIYLNFAELEFESFSSLMAEI 58 MR++V C++R+G+ R++LDLLV G+++ E+ + IYL+ L F +L + Sbjct: 1 MRIKVHCQNRIGILRDILDLLVAYGVNVARGEVGGEHGDAIYLHCPNLINLQFQALRPKF 60 Query: 59 RRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLD 118 I GV V+ V MPSER H+ L+ALL AL PVLS+DM + AN A+ QL G ++D Sbjct: 61 EAITGVFGVKRVGLMPSERRHMELNALLGALEFPVLSIDMVGAIVAANRAAAQLLGVRVD 120 Query: 119 RLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGA 178 + ++ F+ + + + V + G FL +I P + +D + GA Sbjct: 121 EVPGMPLSRYAEDFDLPELVRASQSRINGLRVKVRGDVFLADIAP-LQSEHDDSEAMAGA 179 Query: 179 VVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGT 238 V+ L R+G ++ NV Q+ I S M VV +A+++A L APLLI G+TGT Sbjct: 180 VLTLHRADRVGERIYNVRKQE---LRGIFQSSKVMAAVVREARRMAPLDAPLLIEGETGT 236 Query: 239 GKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGFFEQA 290 GK+L A ACH ASPR P +ALNCA + E E ELFG+ P G+ G E Sbjct: 237 GKELLARACHLASPRGQSPLMALNCAGLSESMAEIELFGYDPGAFEGARAEGRLGLLELT 296 Query: 291 NGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKG 350 GG++ LD +GE+S RMQAKLLRF+ DG+FRRVG D ++ +DVRV+C+TQ L EL +G Sbjct: 297 AGGTLFLDGVGELSARMQAKLLRFIQDGSFRRVGSDEDMFLDVRVMCSTQVELSELCAQG 356 Query: 351 MFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRY 410 +FR+DLY+RLNVL+L++PPLRDC + PL E F+ + + G P P +A L++Y Sbjct: 357 VFRQDLYHRLNVLSLHIPPLRDCLDGLEPLVEHFLDHASRQIGCPLPGIAPAAIKRLSQY 416 Query: 411 AWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFER 470 WPGNVRQL+N +++A++ DG +++ + I LPDY + + ++EG LD I RFE+ Sbjct: 417 HWPGNVRQLENVLFQAVSLCDGSKVQAEHIRLPDY-GVRPGLSDVSLEGGLDAIIGRFEK 475 Query: 471 SVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKKNE 512 SVL LY YPS+R+L KRLGVSHT IANKLR Y L ++ Sbjct: 476 SVLEHLYAQYPSSRQLGKRLGVSHTTIANKLRGYELGRESGR 517 >UniRef50_Q2LQP1 Transcrption factor sigma 54 type n=4 Tax=Deltaproteobacteria RepID=Q2LQP1_SYNAS Length = 555 Score = 511 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 133/452 (29%), Positives = 221/452 (48%), Gaps = 29/452 (6%) Query: 78 EHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRW 137 + +L+ E + +D K KV M +PA+ + FG + + +QL G + + Sbjct: 103 NEEMVRMVLDNPYEGLSVIDTKGKVTMFSPANEKWFGLESGGGMGLSLSQLAPGTHLTKV 162 Query: 138 LESEPQDSHNEHVVINGQNFLMEITP-------------VYLQDENDQHVLTGAVVMLRS 184 + + V ++G+ + P + Q L V + Sbjct: 163 ARTGVGERA--VVDLHGETKITINLPVRKDNRVIGAFGRILFQSPEQLEKLADRVRAMER 220 Query: 185 TIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFA 244 + L + + +F I+ +P M+ ++EQA+++A SA +LI G++GTGK+LFA Sbjct: 221 KVERYETLLDEMRRHRFSFENILTQNPDMQRIIEQARRIAASSATVLILGESGTGKELFA 280 Query: 245 YACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVL 296 A H+AS R P++A+NC +IP +ESELFG+ +GK G FE A G++ Sbjct: 281 QALHEASHRRKGPFVAINCGAIPHTLIESELFGYEEGAFSGASKKGKPGKFELACDGTLF 340 Query: 297 LDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDL 356 LDEIGE+ QAKLLR L + R+G + VD R++ AT ++L L G FR DL Sbjct: 341 LDEIGELPIDSQAKLLRVLEERKIDRLGGTAPIAVDFRLVVATNRDLTALANSGKFRSDL 400 Query: 357 YYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNV 416 +YR+N + +PPLR DI L E F+ + ++G+ PK + + VL Y WPGNV Sbjct: 401 FYRINEFPIEIPPLRQRLDDIPLLAEHFLTKACQQEGLAMPKFSEEAIKVLMSYEWPGNV 460 Query: 417 RQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQL 476 R+L++ I + + G + ++ + V + G+L+E +R ER+ + Sbjct: 461 RELRSLIRQMAWKFQGMTVELHNLPQAFHKERKVTMS-----GTLEEQLARAERNAIETA 515 Query: 477 YRN-YPSTRKLAKRLGVSHTAIANKLREYGLS 507 + + A+ LG+ TA+ K+ G+ Sbjct: 516 LQTSNGNRALAARMLGIHRTALYKKMNRLGVD 547 >UniRef50_A3Y5W7 Transcriptional regulatory protein n=1 Tax=Marinomonas sp. MED121 RepID=A3Y5W7_9GAMM Length = 514 Score = 511 bits (1317), Expect = e-143, Method: Composition-based stats. Identities = 206/521 (39%), Positives = 309/521 (59%), Gaps = 24/521 (4%) Query: 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI-GRIYLNFAELEFESFSSLMAEIR 59 M+L + C DR G+ +++LD+L + IDL GIEI+ G +L+ ++ S ++MAEIR Sbjct: 1 MQLAIACTDRTGIAQDVLDILAHQDIDLTGIEINHEQGGFFLSTEQVALASMQTVMAEIR 60 Query: 60 RIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDR 119 ++ GV DV+T ++P L + + L EP+ S+D+ K M+N A+ LF L++ Sbjct: 61 KVEGVKDVKTTSYLPMSHSLYELENITDQLNEPLFSMDLNGKRVMSNQAANTLFSWPLEK 120 Query: 120 LRNHTAAQLINGFNFLRWLE--SEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTG 177 ++ I+ L+ E S+ +++ N + FL EI + Q + D H L Sbjct: 121 TKHK-----IDCLALLQLTELPSQYGHPSYQNLQFNQRPFLAEIRLI-QQKQLDSHYLV- 173 Query: 178 AVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTG 237 L S + L + V+ + AVS KM+ +++ APLLI+G+TG Sbjct: 174 ---RLLSPKYLSNCLHQAQSNPVNP-EPLQAVSLKMRKLLKVIDVATRSEAPLLISGETG 229 Query: 238 TGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQ 289 TGKDL A H R + +L L+CA++P++ E+ELFGHA EGKKG + Sbjct: 230 TGKDLLATMSHNQGSRKEQAFLVLSCATLPDNVAENELFGHAPFAFSNEDEEGKKGLLQL 289 Query: 290 ANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQK 349 A+ G++ LDE+G+MS +Q KLLRFL G FRRVG++ E+ VDVR+ICATQ ++++ VQ Sbjct: 290 ADKGTLYLDEVGDMSAILQVKLLRFLEQGKFRRVGDEKEIQVDVRIICATQHDILDKVQS 349 Query: 350 GMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTR 409 G FR+DLYYRLNVL++NLPPLR+ +DI+PL E FV F EQG P L+ D L Sbjct: 350 GEFRQDLYYRLNVLSVNLPPLRERKEDIIPLAEHFVHTFCAEQGKPALSLSEDCCQALIN 409 Query: 410 YAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAAT--VAVGEDAMEGSLDEITSR 467 Y WPGNVRQLKN + +++ + +D+ LP Y + EGSL++ + Sbjct: 410 YPWPGNVRQLKNVLLPSVSMAQNTLIDAKDLALPQYQPTQDVQKLNLTEFEGSLEQAMKQ 469 Query: 468 FERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQ 508 +E +L L+ +YPS+R LAK+LG+SHTAIANKL+E+G+++ Sbjct: 470 YECQLLKSLFPSYPSSRLLAKKLGLSHTAIANKLKEHGINK 510 >UniRef50_A8MJJ5 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=A8MJJ5_ALKOO Length = 494 Score = 511 bits (1316), Expect = e-143, Method: Composition-based stats. Identities = 122/500 (24%), Positives = 219/500 (43%), Gaps = 37/500 (7%) Query: 37 GRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSV 96 I+ + + ++ R G+ D+R V ++ +++ L + V+ Sbjct: 2 NPIFCSILQRNKKNGLEEHNVRRESMGIDDIRNVDPEITKL-------IIDHL-DGVVIT 53 Query: 97 DMKSKVDMANPASCQLFG-QKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQ 155 D + + N ++ G KL+ ++ LI L++ + + + Sbjct: 54 DAQGRYVYVNDTWSEMMGGIKLEDVKGKYVKDLIPDTKIDFVLKTGKPITGHVIIAKGPS 113 Query: 156 NF--LMEITPVYLQDENDQHVLTGAVV--------------MLRSTIRMGRQLQNVAAQD 199 P++ + ++ + + + +Q Sbjct: 114 KIKSFSTYIPIFNKQGKLVAGFIHVIIKGMENAIDFSFRINSMATQLEYYQQELKKIRGA 173 Query: 200 VSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYL 259 IV SP+++ + + + + ++ +LI G+TG GK+L A++ H S R P++ Sbjct: 174 KYTIDHIVGDSPEIQELKRKIIQASRTNSTVLIEGETGVGKELVAHSIHDLSNRDSFPFV 233 Query: 260 ALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKL 311 +NC++IP + +ESE FG+ GK+G FE AN GS+ LDEI ++ Q KL Sbjct: 234 KVNCSAIPRELLESEFFGYEEGAFTGAKKGGKEGRFEMANKGSLFLDEINQLPLFSQPKL 293 Query: 312 LRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLR 371 LR L + RVG + VDVRVI A NL +++++ FR DL+YRLNVL + +PPLR Sbjct: 294 LRALQEKEIERVGGKGSIPVDVRVIAAANVNLEKMIEEKKFRSDLFYRLNVLKIVIPPLR 353 Query: 372 DCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVL--TRYAWPGNVRQLKNAIYRALTQ 429 +DI + E + + + G+ P ++ D L Y WPGN+R+L+N + RA+ Sbjct: 354 KRKEDIPLIVESLIEKLNFQLGMKVPGISEDAKMKLTEVHYDWPGNIRELQNIVERAMNS 413 Query: 430 LDGYELRPQDILLPDYDAATVAVGEDAME--GSLDEITSRFERSVLTQLYRNYPSTRKLA 487 G L + + + + +I E+ + N S + A Sbjct: 414 SWGETLEWVHFKDYFRSKNPKFIDKISQNNMSKIKDIKEELEKETIINALENSKSKAEAA 473 Query: 488 KRLGVSHTAIANKLREYGLS 507 K+LG+S TA KL++Y + Sbjct: 474 KKLGISRTAFYKKLKKYEIK 493 >UniRef50_A1AME4 GAF modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfuromonadales RepID=A1AME4_PELPD Length = 661 Score = 511 bits (1316), Expect = e-143, Method: Composition-based stats. Identities = 141/496 (28%), Positives = 234/496 (47%), Gaps = 27/496 (5%) Query: 32 EIDPIGRIYLNFAELEFESFSSLMAEIRRIAG---VTDVRTVPWMPSEREHLALSALLEA 88 EI + I ++ + ++A + I + V + ++ + LLE+ Sbjct: 176 EIVGVLNISGDYRYANAHTLGMVVAAVNAIEKQLCLHKVTSKLYISYKYS----QTLLES 231 Query: 89 LPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLING-FNFLRWLESEPQDSHN 147 + + ++SV+ + N + ++FG + ++ L L + Sbjct: 232 ISDGIVSVNNSGIIAEMNSSGGKIFGINHQAAKGKHINTVMRQQAPILSLLATGEGYRDR 291 Query: 148 EHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIR-MGRQLQNVAAQDVSAFSQI 206 E ++ N + + L D GAV +LR + + ++ +F I Sbjct: 292 EILLENQGKKVFSSATLLLDD---SGNTIGAVAVLRQARDALKSRRAQHSSLPRYSFDDI 348 Query: 207 VAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASI 266 + SP + E A+ A + +L++G++GTGK+LFA + H S P++A+NCA+I Sbjct: 349 IGESPAISEAKEWARIAANSGSTILLSGESGTGKELFAQSIHNVSSFRNGPFIAINCAAI 408 Query: 267 PEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDG 318 PE VESELFG+A G G FE A+ G++ LDEIG+M +QAK+LR + + Sbjct: 409 PEALVESELFGYAEGTFTGAKKGGSPGKFESADRGTLFLDEIGDMPLTVQAKVLRVIQEK 468 Query: 319 TFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIM 378 RVG E V++R+I +T KNL V G FREDL+YRLNVL + +PPLRD DI Sbjct: 469 KISRVGSSEERQVEIRIIASTHKNLRTEVLNGNFREDLFYRLNVLVVQVPPLRDRGGDIP 528 Query: 379 PLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDG-YELRP 437 + V + + G R L + WPGNVR+L+NAI +A+ + D L Sbjct: 529 LVACHLVEKISARMGKQRIVGEDAFWGKLASHNWPGNVRELENAIEQAVVRSDDSGVLLA 588 Query: 438 QDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNY-PSTRKLAKRLGVSHTA 496 + + ++ G A SL E+ E+ +T Y + +K A +LG+ Sbjct: 589 RHLTFDVVESVAPTGGR-AEIVSLTEM----EKQAITAALHLYDGNIQKAASKLGIGRNT 643 Query: 497 IANKLREYGLSQKKNE 512 + K+REYG++ ++ Sbjct: 644 LYRKIREYGIAHAGSQ 659 >UniRef50_B3E653 PAS modulated sigma54 specific transcriptional regulator, Fis family n=7 Tax=Desulfuromonadales RepID=B3E653_GEOLS Length = 463 Score = 510 bits (1315), Expect = e-143, Method: Composition-based stats. Identities = 135/459 (29%), Positives = 223/459 (48%), Gaps = 32/459 (6%) Query: 75 SEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQL-INGF- 132 ++ +LE++ E ++ D ++ N + ++ G K + T + Sbjct: 1 MQQLTTIYRDILESMAEGIIFADADDRLTFINQTAEEIRGIKAENFIGRTIFSVHSPNSA 60 Query: 133 ----NFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRM 188 L+ L + + G+ F PV D L + + ++ Sbjct: 61 KRIKELLQKLRDGSIKQARRVIEVKGRYFENSYYPVSSPDGGYLGTLLIS-RDVTERQQL 119 Query: 189 GRQLQNVAAQ-DVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYAC 247 + Q++ + +F V++S M V + +A L + +LITG++GTGK+L A A Sbjct: 120 QHENQSLKQRMACGSFGGFVSISSSMLPVFQTIGAVAGLESTVLITGESGTGKELVAAAI 179 Query: 248 HQASPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEI 300 H+ S R + + +NCA++PE VESELFG+ A +G FEQA+ ++ LDE+ Sbjct: 180 HRNSARNERAMVTVNCAALPEHLVESELFGYQRGAFTGAVGNHRGKFEQADKSTIFLDEV 239 Query: 301 GEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRL 360 G++ QAKLLR L + T R+G + ++ VDVR+I AT +NL ++V G+FREDLYYRL Sbjct: 240 GDLPANAQAKLLRVLQERTVSRLGSEKDIRVDVRIIAATNRNLQQMVADGLFREDLYYRL 299 Query: 361 NVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLK 420 NV++L +PPLR+ +DI+P+ E F+ RF++ P+ + +VL Y +PGNVR+L+ Sbjct: 300 NVISLPVPPLRERREDILPMAEFFLKRFSERMERPQLGICEATRSVLLSYDYPGNVRELE 359 Query: 421 NAIYRALTQLDGYELRPQDILLPDYDAATVAV----------------GEDAMEGSLDEI 464 + I RA+ G + P D+ A + +DA +L Sbjct: 360 HGIERAVALCPGSCISPADLPEQFVAARSSGGPDWQHPLSVRAGDQYRPDDAAPATLANA 419 Query: 465 TSRFERS-VLTQLYRNYPSTRKLAKRLGVSHTAIANKLR 502 ER +L L R + AK L +S + KL+ Sbjct: 420 REESERRLILDALVRTGGRKAEAAKLLNISRKTLWEKLK 458 >UniRef50_A5GDL0 Sigma-54 specific transcriptional regulator, Fis family n=4 Tax=Geobacter RepID=A5GDL0_GEOUR Length = 591 Score = 510 bits (1315), Expect = e-143, Method: Composition-based stats. Identities = 139/464 (29%), Positives = 223/464 (48%), Gaps = 39/464 (8%) Query: 76 EREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNF- 134 + L A++ + + + D ++ V NPAS ++ K + + H L+ F Sbjct: 135 QELTSELGAIINSSSDGLWICDSQANVLRINPASERINHIKAEDVVGHNMRDLVAEGVFD 194 Query: 135 ----LRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGR 190 L L + + + G+ ++ TPV+ + L VV R + Sbjct: 195 KSATLEVLRTGNVANMLQQ--REGRKLILTGTPVF----DTAGRLIRVVVSERDITEIDI 248 Query: 191 QLQNVAAQD--VSAFSQ--------------IVAVSPKMKHVVEQAQKLAMLSAPLLITG 234 + + Q+ F ++A SP M + QA K++ + + +LI G Sbjct: 249 LQRELEEQEAMKDQFRHHMIEKQQVELESHRVIARSPVMLKALHQAIKVSTVDSSVLILG 308 Query: 235 DTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGF 286 ++G GK L A H+ S RA KP + +NC +IPE +ESELFG+ GK G+ Sbjct: 309 ESGVGKGLIADLIHKNSLRAKKPLIKINCGAIPESLIESELFGYEKGAFTGAQAGGKPGY 368 Query: 287 FEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVEL 346 FE A+GG++ LDEI E+ Q KLLRFL DG R+G + VDVR++ AT +NL E+ Sbjct: 369 FELADGGTLFLDEIAELPLSSQVKLLRFLEDGRITRLGGTNGRTVDVRILAATHRNLEEM 428 Query: 347 VQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTV 406 V +G FR DLYYRL V+ + +P +R+ I+PL ++ F + G+ +L + + Sbjct: 429 VSQGKFRLDLYYRLKVIPIYVPSVRERKDCILPLIHHYIDFFGTKTGIK-KRLTRAASDI 487 Query: 407 LTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGED---AMEGSLDE 463 L Y +PGNVR+L N R + + + +D+ E SL + Sbjct: 488 LMSYPYPGNVRELMNICERLVVMSEMELIDLKDLPGDIVARVEETGKASMAWPEEMSLQQ 547 Query: 464 ITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 ER+VL Q Y + ++A+ LGV+ + IA KL++YGL+ Sbjct: 548 AIDSVERNVLAQAVERYGNQCRMAEVLGVNQSTIARKLKKYGLT 591 Score = 53.4 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 52/132 (39%), Gaps = 14/132 (10%) Query: 83 SALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEP 142 AL+ A+ VL+V+ +AN ++ + FG ++ + + ++ Sbjct: 27 QALVNAMGVGVLAVNTSGMTILANKSARENFGAYP----GIHLNDVLPEL-WPKVVQRLR 81 Query: 143 QDSHNEHVVINGQN--FLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVA--AQ 198 + +H+ V + G +L+ ++P+ L E GAV + + + + + Sbjct: 82 KHTHSIEVSVRGGEANYLVRVSPILLDKEQ-----VGAVCVFVESTGLEEMAMQMQTFQE 136 Query: 199 DVSAFSQIVAVS 210 S I+ S Sbjct: 137 LTSELGAIINSS 148 >UniRef50_C0Z9N5 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z9N5_BREBN Length = 584 Score = 509 bits (1313), Expect = e-143, Method: Composition-based stats. Identities = 137/476 (28%), Positives = 230/476 (48%), Gaps = 31/476 (6%) Query: 49 ESFSSLMAEIRRIAG--VTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMAN 106 E + ++ E+ + V T S+ L L+ + + + D V N Sbjct: 122 ERYQQILTEVSEMITAIVQSHATRQTESSDDSMRLLEGALDTVADAYFTFDRSGNVIHTN 181 Query: 107 PASCQLFGQKLDRLRNHTAAQ-LINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVY 165 ++ +L L ++ L+ + L + +++ + E TP+ Sbjct: 182 ASARRLL--SQHDLLPAEVSRMLLPSLSGL-----TAHSLPIANCLVDKLDAPTEATPII 234 Query: 166 LQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQ---DVSAFSQIVAVSPKMKHVVEQAQK 222 + ++ ++ G + + R ++ + R + + ++ + +QIV SP +K V E A K Sbjct: 235 VNNQ----LIGGVLRVQRGSLTVPRLMDHQGSRSPGKADSLAQIVGNSPAIKQVKEMAMK 290 Query: 223 LAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA--- 279 + ++ +LITG+TGTGK A A H+AS RA P++A+NCASIPE+ ESELFG+ Sbjct: 291 IGNSNSTVLITGETGTGKGHLAKAIHEASTRAYSPFVAINCASIPENLFESELFGYEDGA 350 Query: 280 -----PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVR 334 GK G FE A GG++ LDEIG+M +QAKLLR L + R+G + VR Sbjct: 351 FTGAKKGGKPGRFEMAEGGTLFLDEIGDMPLSLQAKLLRVLQEKVVERIGGTRSFPIHVR 410 Query: 335 VICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGV 394 +I AT +NL ELV+K FR DLYYRLNV+ +++P L + +DI L F+ ++ ++ G Sbjct: 411 IIAATNQNLEELVEKKAFRADLYYRLNVIPIHVPSLAERKEDIELLAVSFMEKYGEQAGR 470 Query: 395 PRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGE 454 +A + +LT Y WPGNVR+L+NAI A+ L + VA Sbjct: 471 TFFGIAREAINLLTHYHWPGNVRELENAIEYAMNMEQDTVLTADSLPPRLRARPLVAPSH 530 Query: 455 DAMEGSLDEITSRFERSVLTQLYRNYPS----TRKLAKRLGVSHTAIANKLREYGL 506 + + + + + + S +++A+ LG+ + KL+ G+ Sbjct: 531 SGPAIKVR--VADAQADAIRASLQKHGSDLKGKQRVAEELGIGLRTLYRKLKLLGI 584 >UniRef50_A6TWZ7 Sigma54 specific transcriptional regulator, Fis family n=24 Tax=Clostridiaceae RepID=A6TWZ7_ALKMQ Length = 645 Score = 509 bits (1313), Expect = e-143, Method: Composition-based stats. Identities = 130/475 (27%), Positives = 227/475 (47%), Gaps = 23/475 (4%) Query: 46 LEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMA 105 + + + A IA + + + V ++ +++++ + +V K + Sbjct: 162 VHSHTLGMVAAAANAIAYMLESKEVN-NKLFLAKKSIETIVDSIDAGIFTVGPKGYMKTI 220 Query: 106 NPASCQLFGQKLDRLRNHTAAQLINGFN-FLRWLESEP---QDSHNEHVVINGQNFLMEI 161 N + + D + +LI G+ +ES ++ + + Sbjct: 221 NQVASHMLQYTNDEILGMEGIKLIEGWAGVQESVESNISYVEEEAYIKTKKGKIHCTLSA 280 Query: 162 TPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQN-VAAQDVSAFSQIVAVSPKMKHVVEQA 220 P+ + +N L G V M+R +M R + + Q + F +I+ +V A Sbjct: 281 YPILDESKN----LQGIVCMIREIKKMRRLVNKMIGKQALYTFDKIIGRDENFIRMVNYA 336 Query: 221 QKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAP 280 +K++ + +LI G++GTGK++FA + H S R +P++A+NC ++P + +ESELFG+ Sbjct: 337 KKISDSPSTVLIMGESGTGKEVFAQSIHNHSERRDEPFVAINCGALPRNLIESELFGYED 396 Query: 281 E--------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVD 332 G G FE A+GG++ LDEIGEM MQA LLR L +G RVG + E+ VD Sbjct: 397 GAFTGAKRGGHPGKFELADGGTLFLDEIGEMPLDMQANLLRVLEEGKLFRVGGNKEIAVD 456 Query: 333 VRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQ 392 VR+I AT K+L + V++ FR DLYYRLNVL L LPPLR+ DI L + F+ A + Sbjct: 457 VRIIAATNKDLRDEVERNNFRGDLYYRLNVLPLILPPLRERKSDIPLLIDYFMTIKALKL 516 Query: 393 GVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAV 452 L D+ + Y W GN+R+L+N I + + L ++ +++ Sbjct: 517 KKSMTYLPRDIMDQMINYTWRGNIRELENVIENLMNSGELNFLERVELSSTSNESSPRVY 576 Query: 453 GEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 ++ L+++ R VLT+ + + A+ LG+ + K+ +Y + Sbjct: 577 SLESE--PLEDMEKRHIHQVLTKYE---GNVSQAAEALGIGRNTLYRKMAKYKID 626 >UniRef50_Q67RR4 Sigma-54-dependent transcriptional regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67RR4_SYMTH Length = 470 Score = 509 bits (1313), Expect = e-143, Method: Composition-based stats. Identities = 137/469 (29%), Positives = 215/469 (45%), Gaps = 37/469 (7%) Query: 73 MPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLI--N 130 M + +L LL+ + V VD + +V N + +L+G + + Sbjct: 1 MENGVLQASLGPLLDLVDLAVTIVDAEGRVAAWNEGAERLYGIAAPDILGRAITGFFTPS 60 Query: 131 GFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGR 190 R LES + H G L+ PV + + GA+ + R + Sbjct: 61 SLMVRRVLESGQRVEWTYHQPRPGIYVLVSAAPVIRDGQ-----VVGAIAVERDVTDLVE 115 Query: 191 QLQNVAAQD--------------------VSAFSQIVAVSPKMKHVVEQAQKLAMLSAPL 230 + F + P ++ + A +A A + Sbjct: 116 LSNELLQARGQVDALQERLSPSPAPAPPSADPFQAVRGRHPAIRRAIRLASLVAATDATV 175 Query: 231 LITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--------G 282 LI G+TG GK+LFA A HQAS R P++ LNC +IP ESELFG+AP G Sbjct: 176 LIRGETGAGKELFARAIHQASRRRDGPFVVLNCGAIPATLFESELFGYAPGAFTGANPKG 235 Query: 283 KKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKN 342 ++G E A+GG++ LDE+G++ Q KLLRFL D F RVG + VDVRV+ AT ++ Sbjct: 236 QRGKLELAHGGTLFLDEVGDLPLESQVKLLRFLEDRKFYRVGGSTPITVDVRVVVATNRD 295 Query: 343 LVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAAD 402 L ELV++G +R+DLY+RLNV TL++PPLR+ +DI L + F+ F+ G P ++ Sbjct: 296 LEELVRQGRYRDDLYWRLNVFTLDIPPLRERREDIAELMQRFLHEFSMRYGRPPAEVHPA 355 Query: 403 LNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDIL--LPDYDAATVAVGEDAMEGS 460 + + + WPGNVR+L++A+ R + + P+ I L A G A + Sbjct: 356 VIQAMMEHTWPGNVRELRSAVERMVILSPDGAVGPELIPAILGPARRGAAAAGPAAPPCA 415 Query: 461 LDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQK 509 +++ L + A+ LG+S + N++R GL + Sbjct: 416 PGAAPQDEREAIVAALAATRYNRSAAARLLGISRGTLYNRMRRLGLDAQ 464 >UniRef50_A6TL57 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TL57_ALKMQ Length = 580 Score = 509 bits (1313), Expect = e-143, Method: Composition-based stats. Identities = 130/466 (27%), Positives = 211/466 (45%), Gaps = 42/466 (9%) Query: 82 LSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESE 141 + ++ + VL D S V N A L G + + + G + + Sbjct: 122 FDYFINSISDAVLICDHDSIVKKINKAYTHLTGVSPNGIEGKKVNSVRKGAQISHAVNTG 181 Query: 142 PQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAA---- 197 + + + +++ PV + + + G VV+ + + + V Sbjct: 182 VAMKNIYRQE-GDREYFVDLYPVSVGGK-----ILGGVVLAKDITEIQHLTKKVNQWKTQ 235 Query: 198 ------------QDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAY 245 + F I+A SP MK + +K+A +LI G++GTGKD+F+ Sbjct: 236 FSKLKSSVASHHKAAKTFDDIIAKSPAMKSCITLGKKVANSDTNILIRGESGTGKDIFSQ 295 Query: 246 ACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLL 297 A H S R P++A+NCASI + SELFG+ GK G FE AN G++ L Sbjct: 296 AIHNYSYRKNHPFVAINCASISPTLILSELFGYEDGAFTGASKGGKIGLFELANKGTLFL 355 Query: 298 DEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLY 357 DEIG+M +Q+KLLR L +G RVG + V+VRVI AT +L E ++K FR DLY Sbjct: 356 DEIGDMDLDLQSKLLRALENGAITRVGGSTTIKVNVRVIAATNVDLEEKIRKNEFRSDLY 415 Query: 358 YRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVR 417 +RLN++ + LPPLRD ++I L E + + + + T L Y WPGN+R Sbjct: 416 FRLNIIPIRLPPLRDRKEEIPYLVEALLVGLSASLHKRLI-ITPETVTSLKHYHWPGNIR 474 Query: 418 QLKNAIYRALTQLDGYELRPQDIL-------LPDYDAATVAVGEDAMEGSLDEITSRFER 470 +L+N + A T +D + + L + L E S E+ Sbjct: 475 ELQNVLVFAATMIDEDVITIDCLPKKIKERILDHAVPPQPPHEPRSFITPLRESQSELEK 534 Query: 471 SVLTQLYRNYP----STRKLAKRLGVSHTAIANKLREYGLSQKKNE 512 +++ Y +K+A+ LG+S + NK+ +YG+++K+ Sbjct: 535 DKISKGLLEYGATVQGKKKVAQLLGISLATLYNKINQYGINKKRFR 580 >UniRef50_A6SWE4 Sigma-54-dependent transcriptional activator n=4 Tax=Proteobacteria RepID=A6SWE4_JANMA Length = 550 Score = 509 bits (1312), Expect = e-143, Method: Composition-based stats. Identities = 121/461 (26%), Positives = 211/461 (45%), Gaps = 38/461 (8%) Query: 71 PWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLIN 130 E+ + + + + D M N + +G + ++ Sbjct: 97 QMEQLEQMYQDFREIYRNSFDGIFIADGTGTTLMVNEGCERNYGVPASEMIGRHVSEFQR 156 Query: 131 GFNF-----LRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRST 185 +R +ES + S + I G+ ++ P+ +DQ + ++ R T Sbjct: 157 SGLINPVIAMRVIESRQRISAVQETSI-GKTIMVTGIPLL----DDQGAVRKVIINSRDT 211 Query: 186 IRMGRQLQNVAAQDV--SAFS--------------QIVAVSPKMKHVVEQAQKLAMLSAP 229 + + + +A F ++ SP M+ + AQK+A +SA Sbjct: 212 TELIQLQEELARAQEKLHRFEMEVSQLRMDNPAIAGLITRSPGMQQITALAQKVAKVSAT 271 Query: 230 LLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE-------- 281 +LI+G++G GK++ H+ S P++ +NC +IP D +ESELFG+ Sbjct: 272 VLISGESGVGKEVLTRLIHKESAHHAGPFVKINCGAIPRDLLESELFGYEAGAFTGAQRQ 331 Query: 282 GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQK 341 GK G E A+ G++ LDEIGE+ +Q KLL+ L D T R+G + VDVRV+ AT + Sbjct: 332 GKVGMIEVADKGTLFLDEIGELPLDLQVKLLQVLQDRTLTRLGGTRPIQVDVRVVAATNR 391 Query: 342 NLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAA 401 +L +V FR DL+YRLNV+ L++PPLR+ +DI+PL + ++ + + +L+ Sbjct: 392 DLQAMVDARQFRSDLFYRLNVVPLHVPPLRERREDILPLIQHYLDELNAQYDLD-KRLSE 450 Query: 402 DLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSL 461 L Y WPGNVR+L+N + R + +R + + + D + Sbjct: 451 QALAALLDYDWPGNVRELRNMVERLVVTAPESLIRSDSLP---TLLRSSELESDLARLDI 507 Query: 462 DEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLR 502 ++ FER ++ + Y +TR AK L VS + + +L+ Sbjct: 508 KARSAHFERKIVKEAVERYGNTRAAAKHLQVSQSTVVRRLK 548 >UniRef50_Q2FA16 TyrR n=1 Tax=Vibrio sp. DAT722 RepID=Q2FA16_9VIBR Length = 460 Score = 509 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 219/460 (47%), Positives = 305/460 (66%), Gaps = 7/460 (1%) Query: 55 MAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFG 114 MAEIRRI+GV DVR + +MP ER + L +L++ LP+PV ++D+K VDMAN A+ L G Sbjct: 1 MAEIRRISGVKDVRKIQFMPMERHNTELLSLVDNLPDPVFAIDLKGAVDMANMAALSLLG 60 Query: 115 QKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHV 174 Q + L+ F RW E +VI+G ++++E+ PVY++DE Sbjct: 61 QHKQDVIGTQIGTLLPSVRFSRW-SEGVNARTRESLVIDGLDYILELMPVYIKDEAQNST 119 Query: 175 LTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITG 234 L ++ +RS+ + + + + + F V +S + + ++ QA+KL++L PLLI G Sbjct: 120 LASTLMTIRSSQQGSQIEETLPLHNQLGFEHFVGLSNRHRALINQAKKLSVLDQPLLIEG 179 Query: 235 DTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE------GKKGFFE 288 +TGTGK++ A ACH S RA KP+L L+CAS+P+D E+ELFGHAP G KG FE Sbjct: 180 ETGTGKEMLAKACHSRSGRASKPFLVLSCASMPDDVAETELFGHAPGSFNHEQGHKGIFE 239 Query: 289 QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQ 348 QANGG+V LDEIGEMS +Q KLLRFL DG FRRVG + E+HVDVR+I +T+ NL EL + Sbjct: 240 QANGGTVFLDEIGEMSSHLQIKLLRFLQDGNFRRVGAEDEMHVDVRIIASTKHNLAELAE 299 Query: 349 KGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLT 408 G FREDLYYRLNVLTLN+PPLR D+ PL +LFV + A + G+ +P+L +L L Sbjct: 300 AGKFREDLYYRLNVLTLNIPPLRKRSNDVAPLLDLFVTKHAQQLGIDKPELDEELVDALA 359 Query: 409 RYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRF 468 Y WPGN+RQL N + RALT++DG+ L+ ++ LP A ++GSLDEI + Sbjct: 360 NYQWPGNMRQLDNMVLRALTEMDGHVLKAENFNLPQPQAMGGTSTTLNLDGSLDEIMRDY 419 Query: 469 ERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQ 508 E +L +LY+++PS+RKLAKRL VSHT+IANKLR+YG+ + Sbjct: 420 ESQILERLYQSFPSSRKLAKRLNVSHTSIANKLRDYGIRK 459 >UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3 Tax=Bacteria RepID=Q3ABV5_CARHZ Length = 732 Score = 509 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 116/357 (32%), Positives = 184/357 (51%), Gaps = 10/357 (2%) Query: 160 EITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQ 219 + VY L + R R + + I + K+ V + Sbjct: 376 KAIAVYQGLAEIDMCLPFLLKKTRGEAEFYRNKYEMENRKKYYLDGITGQTEKIIEVKKL 435 Query: 220 AQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA 279 +K AM +LI G++G GK++ A H S RA KP++A+NCA+IPE+ +ESELFG+ Sbjct: 436 IEKAAMSDGNVLIQGESGVGKEIAARTIHYLSERADKPFVAINCAAIPENLLESELFGYE 495 Query: 280 PE--------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHV 331 GK G EQA+GG++ LDEIG+M MQ KLLRF+ + F R+G + V Sbjct: 496 EGAFTGAKRGGKAGKIEQADGGTLFLDEIGDMPLSMQVKLLRFIQNREFERIGSNTPRKV 555 Query: 332 DVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADE 391 D+R+I AT + L +LV++G FR DLYYRLNV +N+PPLR+ DI L F+ F + Sbjct: 556 DIRIIAATNQPLAKLVKEGRFRMDLYYRLNVFNINIPPLRERRDDIPLLVNRFMNEFCER 615 Query: 392 QGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVA 451 + + + ++ +L Y+WPGN+R+L+N I RA +G ++P+ + + ++ Sbjct: 616 RKMAPKIVTSEAMNILMNYSWPGNIRELQNVIERAYYLAEGNLIKPEHLP-AQLTSKALS 674 Query: 452 VGEDAMEGSLDEITSRFERS-VLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 + E + E+ ++ L + AK LG+ + K++EYG+ Sbjct: 675 GERITKITTFKEAVAEVEKKLIIEGLKATNYNKLACAKLLGIPRATLYQKIKEYGIE 731 >UniRef50_Q1JWW3 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JWW3_DESAC Length = 658 Score = 508 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 145/499 (29%), Positives = 233/499 (46%), Gaps = 27/499 (5%) Query: 30 GIEIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEAL 89 +I + ++ + + ++A I V + LS L + + Sbjct: 164 CGDISGVLQMSGPCEKTHPHTLGMVVASAEAIRKQLSV-WQRNNELVLANAQLSHLFQTM 222 Query: 90 PEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLI---NGFNFLRWLESEPQDSH 146 + L +D +V NP + ++FG L ++I + + + S Sbjct: 223 SDGALVIDADGRVIQVNPVARKVFG---KELSGEKLNRIITAADSPDLISSTHSCKDLDV 279 Query: 147 NEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVA-AQDVSAFSQ 205 H L+ + P+ + + +GAVV +M + + AQ FS Sbjct: 280 VLHTETEPVEALLTVKPLKDDNSDQ----SGAVVFFNPIRKMKKLVNRFGGAQATFHFSD 335 Query: 206 IVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCAS 265 I+ +K + A+K A + +LI G++GTGK+L A A H S R P+LA+NCA+ Sbjct: 336 IIGEHDSVKAAINMARKAADNLSHVLILGESGTGKELLAQAIHNHSMRRNGPFLAVNCAA 395 Query: 266 IPEDAVESELFGHAPE--------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLND 317 +P D + SELFG+ G+ G FE A+GG++LLDEIG+M QA LLR L D Sbjct: 396 LPRDLIASELFGYTSGAFTGASPKGRPGKFEMASGGTLLLDEIGDMPLDQQATLLRVLQD 455 Query: 318 GTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDI 377 R+G + + VDVRVICAT KNL++ V KG FR+DLYYRLNV +++PPLR+ +D+ Sbjct: 456 KHVTRLGSERAIPVDVRVICATNKNLLDAVSKGHFRQDLYYRLNVTRIDVPPLRERGRDV 515 Query: 378 MPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRP 437 L + + + RP + + T L Y WPGNVR+L+N + R + ++ L Sbjct: 516 ELLFRFLLKKISLRLHQARPHVDEAVVTALLHYGWPGNVRELENVVERMIHTVEEETLHC 575 Query: 438 QDIL------LPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNY-PSTRKLAKRL 490 + P A +V +L ++ ER +L L + Y + +A+ + Sbjct: 576 AHLPREICCETPVGRALPDSVVTTQDAATLKQVVGEQERRLLVDLLQRYQGNISLIAREM 635 Query: 491 GVSHTAIANKLREYGLSQK 509 VS I K+ Y +S+ Sbjct: 636 AVSRNTIYRKMHHYNISRD 654 >UniRef50_B8D1H9 Putative PAS/PAC sensor protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1H9_HALOH Length = 877 Score = 508 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 122/467 (26%), Positives = 216/467 (46%), Gaps = 25/467 (5%) Query: 61 IAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRL 120 + + + + + + + L+ + ++ V +++ N + + G K L Sbjct: 410 LPYLINEKRSELKEIQILNKEMDTLINFSCDGLVMVSKDGRIERVNHSYLNMVGFKRQDL 469 Query: 121 RNHTAAQLINGFNFLRWLES----EPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLT 176 +L + S E ++ + + L PV+ ++ + + V+ Sbjct: 470 IGKRVEELEKERYIYPSVASLALKEKRNITLVENTSDKKRLLATANPVFNENGDLEWVVV 529 Query: 177 GA----------VVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAML 226 + + I+ S +MK+++ +K+A Sbjct: 530 NVRNLDLINDEKDKEKEKLKKYLDNAPQLDNNPEGNTGHIIVSSDEMKNILMTCRKIAGT 589 Query: 227 SAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE----- 281 + +LITG++G GK++ A H+ SP + ++ +NCA+IPE +ESELFG+ Sbjct: 590 DSTVLITGESGVGKEVVARYIHEQSPGRQE-FVKINCAAIPESLLESELFGYETGAFSGA 648 Query: 282 ---GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICA 338 GK G E+A+ G++ LDEIGEM MQAKLL+ L + R+G V +D R+I A Sbjct: 649 KRAGKPGLIEKADRGTLFLDEIGEMPLNMQAKLLQVLQERKLTRIGGVKPVKIDFRLIAA 708 Query: 339 TQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPK 398 T ++L ++V++ FR+DL+YRLNV+ L +PPLR P+DI+ L + F+ ++ ++ Sbjct: 709 TNRDLRQMVRQKYFRQDLFYRLNVVPLYIPPLRKRPEDILSLIKYFLDQYCEKYNKQIK- 767 Query: 399 LAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLP-DYDAATVAVGEDAM 457 L D +L Y+WPGNVR+L N I R + + + I+ D Sbjct: 768 LTRDAEELLLSYSWPGNVRELTNLIERLVVTCEESFVDRNIIIEYIDNPEVKTPEILINK 827 Query: 458 EGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREY 504 L E +R E+ +L+ ST +AK LGV+ + + KL +Y Sbjct: 828 IMPLPEAVARVEKKLLSMARSKGNSTYDMAKLLGVNQSTVVRKLHKY 874 >UniRef50_C8WZA1 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WZA1_DESRD Length = 631 Score = 507 bits (1307), Expect = e-142, Method: Composition-based stats. Identities = 145/516 (28%), Positives = 229/516 (44%), Gaps = 37/516 (7%) Query: 6 FCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVT 65 +C+ G T + G +L+GI + ++ + + + R + Sbjct: 137 YCQRAHGFTSSAAPVFGHAG-NLQGILVVSGNSQLVH-----PHTLCMISSAARSVERQL 190 Query: 66 DVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTA 125 + L A+LE+ ++ +D + + N Q+ K L Sbjct: 191 RILR-RNSELAMHIGLLDAVLESTTSGLMVIDSQGVIWRVNRKGGQIL--KKTDLAGQEV 247 Query: 126 AQLINGFNFLRWLESEPQDSHNEHVVINGQ----NFLMEITPVYLQDENDQHVLTGAVVM 181 + L + + + P N + + L PV D+ + G V+ Sbjct: 248 SVLQGLDLDIEDIRANPNAWVNRECTLKNGRQNIHILFSAQPVLAGDQ----SMLGVVLE 303 Query: 182 LRSTIRMGRQLQNVAA-QDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGK 240 + + N+A + F ++ S + E A++ A + +L+ G+TGTGK Sbjct: 304 FEPIDSVRKLANNIAGTKAFFTFESMIGSSESFRRAQEMAKRAAHSDSTVLLRGETGTGK 363 Query: 241 DLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANG 292 +LFA A H AS R P++ +NC +IP + +ESELFG+ G+ G FE A+ Sbjct: 364 ELFAQAIHNASRRRSAPFVPINCGAIPGELLESELFGYVDGAFTGAQKGGRPGKFELAHR 423 Query: 293 GSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMF 352 G++LLDEIG+M MQ KLLR L G R+G VD R+I T +L + V G F Sbjct: 424 GTILLDEIGDMPHDMQVKLLRVLQTGEVYRIGARKPTLVDTRIIACTHVDLGKAVAAGRF 483 Query: 353 REDLYYRLNVLTLNLPPLRDC-PQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYA 411 REDLYYRLNVL + +P LR+ DI+ LTE F++R V P+L L + Sbjct: 484 REDLYYRLNVLPIVIPALRERGRDDILALTEFFLSR----NRVTPPQLTVGAVKALENHP 539 Query: 412 WPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERS 471 WPGNVR+L+N I RAL + E+ + +P+ AA + G+L+EI Sbjct: 540 WPGNVRELENTIQRALHLCEENEIDAACLGVPETAAAASSSTP---RGTLEEIERLAIEQ 596 Query: 472 VLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 L + + AK LG+S + K++ Y L Sbjct: 597 TLED---TKGNMAETAKTLGISRATLYRKVKRYSLE 629 >UniRef50_A4J4R9 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J4R9_DESRM Length = 568 Score = 507 bits (1307), Expect = e-142, Method: Composition-based stats. Identities = 123/458 (26%), Positives = 221/458 (48%), Gaps = 39/458 (8%) Query: 67 VRTVPWMPSEREH-LALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTA 125 ++ + E H L+ LL +PE ++ +D + K+ N + QL Sbjct: 134 IKEGVYKQKELLHTQQLNYLLSLVPEGIVLLDEQKKISTLNERAEQL------------- 180 Query: 126 AQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRST 185 L + ++ R L+ + H + N + + +++ GA+ ++ Sbjct: 181 -NLAHHYHHKRDLK-------DIHTQGHQFNSALSPIQIKVKNFYQDKKFIGAICHTQNF 232 Query: 186 IRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAY 245 + Q V F I+ P ++ ++E +++A + +L+ G++GTGK+LFA+ Sbjct: 233 DTISPLPQRTQRSPV--FPGIIGKGPALQKILEIIKQVAKSESTVLLRGESGTGKELFAH 290 Query: 246 ACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLL 297 + H+ S R P++A+NCA+IPE +ESELFG+ GK G E AN G++ L Sbjct: 291 SIHELSSRNSGPFVAINCAAIPEALLESELFGYEEGSFTGARKGGKPGKVELANNGTLFL 350 Query: 298 DEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLY 357 DEIG+M +QAKLLR + + VG + + ++VR+I AT +NL E++ G FREDL+ Sbjct: 351 DEIGDMPLTLQAKLLRVIQEKNIEPVGCSYPLPINVRLIAATHRNLEEMIGTGTFREDLF 410 Query: 358 YRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVR 417 +RLNV+ + +PPLR P+D L ++ ++ P L+ L +Y WPGN+R Sbjct: 411 FRLNVIPIFIPPLRQRPEDTELLLHYYLRKYCILLKKPFKILSYAALQQLVKYHWPGNIR 470 Query: 418 QLKNAIYRALTQLDGYELRPQDILL----PDYDAATVAVGEDAMEGSLDEITSRFERSVL 473 +L+N + + + + P+D+ + P + + + R + ++ Sbjct: 471 ELENLVEYLVNIHNQDIISPEDLPITIQQPIKEENQPIGIQPVEPQTRKSSGQRSQAELI 530 Query: 474 TQLYRNYP---STRKLAKRLGVSHTAIANKLREYGLSQ 508 L R +K A LGVS + ++++Y L + Sbjct: 531 QMLNRFGWHTDGKKKAAAALGVSLATLYRRIKKYKLKE 568 >UniRef50_C8WQE7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WQE7_ALIAD Length = 535 Score = 507 bits (1307), Expect = e-142, Method: Composition-based stats. Identities = 134/457 (29%), Positives = 213/457 (46%), Gaps = 17/457 (3%) Query: 71 PWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLIN 130 + L + + V D N A+ +L+G + + L + L Sbjct: 81 RLREMREAYEELELIFSEAFDEVFVTDGDGITLRVNRAAERLYGLRQEELIGRSVFDLER 140 Query: 131 GFNFLRWL----ESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTI 186 F + + +G+ PV+ Q N + V++ A + I Sbjct: 141 EGVFYPSVTGLALKLRRQVTVLQTTSDGKQLWATANPVFDQHGNIRIVISTA-KEISDVI 199 Query: 187 R---MGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLF 243 R M + +V SPKM+HV A+++A L+ G+TG GK Sbjct: 200 RPEVMRAETSVGGMDADEQPPNMVTRSPKMRHVFHIAKRVAGTDISCLLLGETGVGKSTL 259 Query: 244 AYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGFFEQANGGSV 295 A H+ SPR P++ +NCA++PE +ESELFG+ GK G E A+ G++ Sbjct: 260 AQWIHRMSPRHRGPFVEVNCAALPESLLESELFGYESGAFTGALKSGKPGKVELAHEGTL 319 Query: 296 LLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFRED 355 LDEI E+ +Q+KLL F+ R+G VD R+I AT ++L ++V+ G+FR D Sbjct: 320 FLDEIAEVPLHLQSKLLDFVERRVLTRIGGTRMHTVDARIIAATNRDLKQMVRDGLFRAD 379 Query: 356 LYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGN 415 LYYRLN + +PPLR+ +DI L + + R DE ++ ++ L Y WPGN Sbjct: 380 LYYRLNGAEIEVPPLRERKEDIPELVQQLLRRIFDECPTMVKRVHPEVIRRLQAYTWPGN 439 Query: 416 VRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQ 475 VR+L++ + R + DG + P D+ D T V G L + ++ ER++ Sbjct: 440 VRELEHVVRRLVILTDGDYILPSDLQDEWIDEETSGVTPCTSRGPLAQ-LAQLERNLYAD 498 Query: 476 LYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKKNE 512 R+ ST ++A+ LGVS + KL++YGLS K+ Sbjct: 499 AARHCRSTYEIAEALGVSQATVVRKLKKYGLSIKRPR 535 >UniRef50_A4IRU9 Sigma-54-dependent transcriptional activator n=3 Tax=Geobacillus RepID=A4IRU9_GEOTN Length = 486 Score = 507 bits (1306), Expect = e-142, Method: Composition-based stats. Identities = 138/486 (28%), Positives = 231/486 (47%), Gaps = 45/486 (9%) Query: 64 VTDVRTVPWMPSEREHL-----ALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLD 118 V D++ + P +H+ L+ L + V D + K+ N A ++ G K + Sbjct: 2 VPDLKHINRFPMNNQHMLQHECVYKIALDHLYDGVFITDNECKILYVNEAYTKMSGLKYE 61 Query: 119 RLRNHTAAQLINGFNF----LRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHV 174 + H L F + E + + +G L+ P+Y ++ Sbjct: 62 DVVGHYVDDLEAKGIFKNSTSPHVRRENKIISSIGKAKDGVEMLITGKPIYDENNE---- 117 Query: 175 LTGAVVMLRSTIRMGRQLQNVAAQDV-----------------------SAFSQIVAVSP 211 L VV R + Q + + + I+ S Sbjct: 118 LIYVVVNQRDISDLEIMRQKLIVTENKMAVVEKERKKKEEENEYYKKQFFNNTGIIGDSE 177 Query: 212 KMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAV 271 +++ V+ K+A L +LITG++G GK++ A Q S R K ++ +NCA+IP + + Sbjct: 178 EIRDVIYLINKIAPLDVTVLITGESGVGKEVIANEIFQKSSRKNKQFIKVNCAAIPTNLL 237 Query: 272 ESELFGHAPEG-------KKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVG 324 ESELFG+ KKG F+ A+GG++ LDEIG++ +Q KLLR L VG Sbjct: 238 ESELFGYEKGAFTGADKAKKGLFQLADGGTIFLDEIGDIPLEIQPKLLRALQQKEVVPVG 297 Query: 325 EDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELF 384 +DVR+I AT K+L + V++G FR+DLYYRLNV + +PPLR+ +DI L E F Sbjct: 298 GTQIQKLDVRIIAATNKDLSQQVKEGKFRKDLYYRLNVFPIEIPPLRERKRDIYALGEYF 357 Query: 385 VARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPD 444 + ++ + G L+++ ++L Y WPGNVR+L+N I R + D + +D + Sbjct: 358 LKQYNKKYGKSVV-LSSEAYSLLMNYDWPGNVRELQNIIERLIIISDDQTVINKDQIEKI 416 Query: 445 YDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREY 504 T+ + +G L EI E+ +L + +N +TRK AK+L + + + KL++Y Sbjct: 417 MFPNTMLDITKSEKG-LKEIIQEIEKEILIDVLKNTGTTRKAAKKLKIDQSTLVKKLKKY 475 Query: 505 GLSQKK 510 G++ + Sbjct: 476 GINIDE 481 >UniRef50_B8FIH6 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FIH6_DESAA Length = 558 Score = 507 bits (1306), Expect = e-142, Method: Composition-based stats. Identities = 119/436 (27%), Positives = 200/436 (45%), Gaps = 19/436 (4%) Query: 84 ALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLIN------GFNFLRW 137 A+ ++LPE V ++D ++ N A+ Q+ G + G + Sbjct: 128 AVFDSLPEGVFTIDTNWRITSFNQAAEQMTGFSRKEALGKQCRDIFRSDLCERGCPMRQA 187 Query: 138 LESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAA 197 +ES + +++ + + N L GAV R A Sbjct: 188 IESGSAKMDQDVRILDKGGAKLNLLVNVSVLRNTDGQLVGAVETFRCLTDEYHLPS--LA 245 Query: 198 QDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKP 257 F IV S M+ + + +A A +L+TG++GTGK++FA A H SP + P Sbjct: 246 DKTGLFQGIVGQSNVMRRLFQMLPDVAASEASVLLTGESGTGKEIFARAIHSLSPSSKGP 305 Query: 258 YLALNCASIPEDAVESELFGHAPEG-------KKGFFEQANGGSVLLDEIGEMSPRMQAK 310 ++A+NC++I E +E+E FGH + G FE A GG++ LDE+ E+ P Q K Sbjct: 306 FVAVNCSAIAESLIEAEFFGHEKGSFTGADQSRAGRFEVAKGGTIFLDEVAELRPEHQVK 365 Query: 311 LLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPL 370 LLR L F RVG + ++ RVI AT ++ ++++ FREDLYYRL + ++LPPL Sbjct: 366 LLRVLEQKMFERVGGTKTIPMEARVISATNLDITAMLEERTFREDLYYRLRTVPMHLPPL 425 Query: 371 RDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQL 430 R+ +DI L + F+ F + L + Y WPGNVR+L+ + A + Sbjct: 426 RERVEDIPLLVQHFIRMFNKKHRKEVRALDPKVLNFFMEYHWPGNVRELERVMEYAYVFV 485 Query: 431 DGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRL 490 G + + + + AA G + + R++L L + ++ A L Sbjct: 486 KGPVIMMKHLPTIEEFAAKRKSGIPQDI----DEEASERRAILRALEKAGGKRQEAANLL 541 Query: 491 GVSHTAIANKLREYGL 506 G+S T++ +++ G+ Sbjct: 542 GMSRTSLWRRMKSLGM 557 >UniRef50_C4XT50 Fis family transcriptional regulator n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XT50_DESMR Length = 480 Score = 507 bits (1306), Expect = e-142, Method: Composition-based stats. Identities = 141/467 (30%), Positives = 216/467 (46%), Gaps = 45/467 (9%) Query: 81 ALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQL-----INGFNFL 135 L A+L+++ + V D AN A QL G L +L N Sbjct: 11 HLDAILDSIEDGVFIADRDGYALKANAAYEQLTGMAKAELIGKNVEELKREGLFNIAPIT 70 Query: 136 RWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGA-----VVMLRSTIRMGR 190 + + + + + V + ++ ++ P+ D V+ A + +R I + Sbjct: 71 PEIVATGRPASSIQVTRDNRSMTIDGKPIRDPDGKVSLVVLYARDITLMARMRERISRQQ 130 Query: 191 QLQNVAAQDVSAF-------SQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLF 243 +L + F + +A + MK +++ +++A A L+ G+TG GK+LF Sbjct: 131 ELIETYQHQMDFFIREGGGITSFIAENSAMKRLMDLLRRVAATDAVALVLGETGVGKELF 190 Query: 244 AYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGFFEQANGGSV 295 A H+ASPR KP++ ++CASIPE+ +ESELFG+AP G+ GFFE A GG++ Sbjct: 191 ARMIHEASPRREKPFVKVDCASIPENLIESELFGYAPGAFTGAHPKGRVGFFEMAEGGTI 250 Query: 296 LLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFRED 355 LDEIGEM +Q+KLLR L D VG +VRVI AT +NL + G FR D Sbjct: 251 FLDEIGEMPLPLQSKLLRVLQDRELTPVGSSKSRKTNVRVIAATNRNLEAEAKVGTFRSD 310 Query: 356 LYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGN 415 L++RL V L +PPLRD P DI+PL +F+ RF L+ + +L Y WPGN Sbjct: 311 LFFRLRVAVLEIPPLRDRPDDILPLARMFLQRFGSRYRKR-TTLSLESERILAHYNWPGN 369 Query: 416 VRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAM------------------ 457 VR+L+N I + D + ++ + Sbjct: 370 VRELENLIEGLVITCDSGRIEADELPTAMRVTECPLASDAPRPTGPATLAPPPMAAPEPD 429 Query: 458 -EGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLRE 503 E E+ + FER L ++ S + AKRLG+ T I KL++ Sbjct: 430 WERPYKEVIAAFERDYLEGAIEHFGSVGEAAKRLGLDRTTIFRKLKK 476 >UniRef50_C6PP25 Proprionate catabolism activator, Fis family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PP25_9CLOT Length = 620 Score = 506 bits (1305), Expect = e-142, Method: Composition-based stats. Identities = 124/487 (25%), Positives = 227/487 (46%), Gaps = 36/487 (7%) Query: 33 IDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEP 92 I I+ E + + E RI V+ + + A+L + + Sbjct: 155 IASKFGIHTVHLETGEAAIEKSIKEAVRILEVSR-------KEKEKAEQFKAILNHINQG 207 Query: 93 VLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVI 152 V+S++ + KV NP + ++ G + ++ + +++ H I Sbjct: 208 VISINKEGKVTTFNPGAEKITGIIEKDILGKDIINFMSNTKLIDVVKTGMPILSQLH-NI 266 Query: 153 NGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQ-------DVSAFSQ 205 L P+ + D+ + GAV + ++ Q + + S Sbjct: 267 GKTEILTNDIPIIVDDK-----VVGAVSTFEAAAKIQEYEQKIRSNLRDKGYIAKYNLSD 321 Query: 206 IVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCAS 265 I+ S ++++ +++ K A+ + +LI G++GTGK++FA H +S R P++ALNC + Sbjct: 322 IIGESEIIQNIKKKSLKYAVTDSTVLIVGESGTGKEMFAQGIHLSSKRKNGPFVALNCGA 381 Query: 266 IPEDAVESELFGHAPE--------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLND 317 IP + +ESELFG+ GK G F +A+GG++ LDEIGE+ QA+LLR + + Sbjct: 382 IPGNLIESELFGYEEGAFTGASRKGKMGLFTEAHGGTIFLDEIGELPIEFQARLLRVIQE 441 Query: 318 GTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDI 377 R +G + + +DVR+I A K+L++ ++KG FR DLYYRLN+L++ +P L + +DI Sbjct: 442 REVRPLGSNKVIPIDVRIIAAANKDLLKEIEKGNFRSDLYYRLNILSMRVPTLMERREDI 501 Query: 378 MPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRP 437 + + F+ K++ +L Y WPGN+R+L+N R + + E+ Sbjct: 502 GIIFKHFLKLMCSRFNK-VVKISEKAINILKEYNWPGNIRELENITERLVVLAE-DEITD 559 Query: 438 QDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAI 497 + L + +D SL+ + +L L + A++LG+S T + Sbjct: 560 E---LVKEELGDFIHYKDEKVSSLEYLKQN---QILKVLSECKGNQTLAAQKLGISRTHL 613 Query: 498 ANKLREY 504 L++Y Sbjct: 614 WRLLKKY 620 >UniRef50_C1PBV8 Putative sigma54 specific transcriptional regulator n=1 Tax=Bacillus coagulans 36D1 RepID=C1PBV8_BACCO Length = 553 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 136/438 (31%), Positives = 222/438 (50%), Gaps = 19/438 (4%) Query: 77 REHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLR 136 HL L++++ EP VD ++ N LF ++ L Q I + Sbjct: 121 EIHLETRKLIQSITEPFCLVDQDGRIQEMNEHMASLFRKRRTTLMGEKITQYITKEKWES 180 Query: 137 WLESEPQDSHNEHV-VINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNV 195 + +D V I G+ + I V +N Q +++ +++ Q Sbjct: 181 IKSGKEKDETVVQVPRIKGEAYFATIQLV----KNKQGIVSYMILLKSKKTEKPEQ---- 232 Query: 196 AAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAG 255 A + + F I+ VS +K ++ A++++ +++ G++GTGK++FA A H S R Sbjct: 233 AGRRLYHFEDILGVSEILKQTIQSAKRVSKSDVTIMLRGESGTGKEMFAQAIHHESERKN 292 Query: 256 KPYLALNCASIPEDAVESELFGHAPEG-------KKGFFEQANGGSVLLDEIGEMSPRMQ 308 +P++ALNCA+IPE+ +ESELFG+ K G FE AN G++ LDEIG+MS +Q Sbjct: 293 QPFVALNCAAIPENLLESELFGYEKGAFTGAEKEKPGRFELANHGTLFLDEIGDMSLYLQ 352 Query: 309 AKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLP 368 AK+LR L + T R+G + +DVR+I AT +NL EL++KG FREDLYYR++V+ + +P Sbjct: 353 AKILRVLQEKTLERIGSNKSRKIDVRIITATHRNLEELIRKGEFREDLYYRISVIPIYIP 412 Query: 369 PLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALT 428 PLR +D+ L E F+ +F+ + LAA+ L +Y WPGN+R+L+N + + Sbjct: 413 PLRARKEDLPILIEHFIQKFSKDLNRDSKNLAAETLDRLMQYDWPGNIRELQNVVRHFVE 472 Query: 429 QLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPS---TRK 485 G + + + A + + T +R VL L RN S +K Sbjct: 473 LQIGDTVTLESLPSSLQRGAKSFPPSVKPKRTNHYQTRLEKRKVLELLERNGWSTEGKKK 532 Query: 486 LAKRLGVSHTAIANKLRE 503 A LG+S + L++ Sbjct: 533 TAADLGISLATLYRYLKK 550 >UniRef50_C6PWR5 Putative sigma54 specific transcriptional regulator n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PWR5_9CLOT Length = 635 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 130/481 (27%), Positives = 224/481 (46%), Gaps = 34/481 (7%) Query: 42 NFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSK 101 E E+ + E IA V + L +L+++ + V+ + +K Sbjct: 168 VLVECGEEAIQQSLQEALHIAEVRKIEAA-------RSARLKVILDSITQGVIVTNEHNK 220 Query: 102 VDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEI 161 + + NPA+ ++F ++ A + I LES + ING Sbjct: 221 IVLYNPAAEKIFDLSSKKVLGKDAFETIPNTRMHNVLESGEAEI-GVLQDINGGTIATNR 279 Query: 162 TPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQ-------DVSAFSQIVAVSPKMK 214 P+ + + G V ++ + Q + + F I+ + M Sbjct: 280 IPIEVDGKR-----IGVVSTFEDITKIQQLEQKIRERIYKKGFVAKYFFEDILTANESMI 334 Query: 215 HVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESE 274 + + A A A +LI G++GTGK+LFA + H AS R+ P++A+NCA+IP++ +ESE Sbjct: 335 ELKKIADLYAKTDAEILIQGESGTGKELFAQSIHNASTRSNGPFVAVNCAAIPDNLLESE 394 Query: 275 LFGHA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGED 326 LFG+ EGK+G FE A+ G++ LDEIGE+S +QA+LLR + + RVG D Sbjct: 395 LFGYEGGAFTGAKKEGKQGLFELAHNGTIFLDEIGEISKGLQARLLRVIQEKEIMRVGGD 454 Query: 327 HEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVA 386 + +D+R++ AT +NL + ++ G FR+DLYYRLNV + LPPLR+ +DI + + Sbjct: 455 KVIPIDIRIVSATNQNLEKQIETGEFRQDLYYRLNVFNIILPPLRERKEDISLIANKLLK 514 Query: 387 RFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQ-----LDGYELRPQDIL 441 +FA+ + K+ ++N +L Y WPGN+R+ N I R + + ++ Sbjct: 515 KFAENYDIDFNKVIKEINPLLIEYDWPGNIREFNNIIERLALVAVQTKSHNWAETLRKVM 574 Query: 442 LPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQ-LYRNYPSTRKLAKRLGVSHTAIANK 500 V + ++ L + FE+ ++ L + K+ K L + K Sbjct: 575 HTVEAMDEHIVVKVNLKNGLKDAVKEFEKYIINSMLLKYDQDKDKVIKELKIGRATFWRK 634 Query: 501 L 501 + Sbjct: 635 I 635 >UniRef50_B0K4W6 GAF modulated sigma54 specific transcriptional regulator, Fis family n=5 Tax=Thermoanaerobacteraceae RepID=B0K4W6_THEPX Length = 576 Score = 505 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 134/470 (28%), Positives = 235/470 (50%), Gaps = 18/470 (3%) Query: 50 SFSSLMAEIRRIAGVTDVRTVPWMPSEREHLAL-SALLEALPEPVLSVDMKSKVDMANPA 108 + +++++ I +++ + L LE +P+L +D ++ N A Sbjct: 115 ALATIVSSAIAIEN--NLKQSKAFKETLTYRQLSEYFLENNSDPLLVMDNTGRLIKVNYA 172 Query: 109 SCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQD 168 S ++ G K + L A ++ + + +L Q + +++ + ++ + Sbjct: 173 SEKVLGWKKEDLIGRRADEIFDNSQEILFLIKARQSIKGKEILVQSKKGILRCSADVSPI 232 Query: 169 ENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSA 228 + A++ L+ + G Q + + F I+ P ++ + AQ A A Sbjct: 233 SGYYNENVAALIALK--MHEGSQFYISSPPALKGFEVILGNHPCLRESIRLAQIAANSDA 290 Query: 229 PLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------P 280 P+LI G+TGTGKDLFA A H+AS R P++A+N ++P + + SELFG+ P Sbjct: 291 PVLILGETGTGKDLFARAIHEASGRK-GPFVAINGGALPRELIGSELFGYVGGAFTGARP 349 Query: 281 EGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQ 340 EGK G FEQA GG++ LDEIG+M +Q LLR L + R+G E+ +DVR+I AT Sbjct: 350 EGKPGKFEQAQGGTLFLDEIGDMPMDIQVYLLRVLEEKKVVRIGGHKEIPLDVRIIAATN 409 Query: 341 KNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLA 400 +L +LV++ FREDLY+RL VLT++L PLR+ DI L + F+ +F+ + G + Sbjct: 410 SDLTKLVREKKFREDLYFRLRVLTIHLCPLRERKSDIPLLFQHFIHKFSQKLGKNITNID 469 Query: 401 ADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGS 460 + +L Y WPGN+R+L+N A+ + + + + T+ ++ + Sbjct: 470 PSIWPLLGNYDWPGNIRELRNVAEWAVNIAEVNTISVSHLPSYLSGSQTIRENSNSFSST 529 Query: 461 LDEITSRFERSVLTQLYRNY-PSTRKLAKRLGVSHTAIANKLREYGLSQK 509 E+ ++QL +Y + K+AK LG++ + KL +YGL + Sbjct: 530 ---SLIELEKQEISQLLEHYGGNITKVAKALGIARNTLYRKLYKYGLKTR 576 >UniRef50_D2LAE8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2LAE8_9DELT Length = 477 Score = 505 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 141/473 (29%), Positives = 219/473 (46%), Gaps = 51/473 (10%) Query: 80 LALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQL-----INGFNF 134 L A+L+++ + V + N A QL G L +L N Sbjct: 3 RHLDAILDSIEDGVFIANRDGYALKVNAAYEQLTGMSKAELIGKNVEELKKAGLFNLAPI 62 Query: 135 LRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGA-----VVMLRSTIRMG 189 + + + + + V + ++ ++ PV D V+ A + +R I Sbjct: 63 TPEIVATGRPASSIQVTRDNRSMTIDGKPVRDPDGTVSLVVLYARDITLMARMRERISRQ 122 Query: 190 RQLQNVAAQDVSAF-------SQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDL 242 ++L + F + +A + MK +++ +++A A L+ G+TG GK+L Sbjct: 123 QELIETYQHQMDFFIREGGGITNFIAENSAMKRLMDLLRRVAATDAVALVLGETGVGKEL 182 Query: 243 FAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGFFEQANGGS 294 FA H+ASPR KP++ ++CASIPE+ +ESELFG+AP G+ GFFE A GG+ Sbjct: 183 FARMIHEASPRREKPFVKVDCASIPENLIESELFGYAPGAFTGAHPKGRVGFFEMAEGGT 242 Query: 295 VLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFRE 354 + LDEIGEM +Q+KLLR L D VG DVRVI AT +NL + G FR Sbjct: 243 IFLDEIGEMPLLLQSKLLRVLQDRELTPVGSSRARKTDVRVIAATNRNLEAEARVGTFRS 302 Query: 355 DLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPG 414 DL++RL V L +PPLRD P DI+PL LF+ RF + ++ VL Y WPG Sbjct: 303 DLFFRLRVAVLEIPPLRDRPDDILPLARLFLQRFGARYRKRA-AFSLEVERVLAHYNWPG 361 Query: 415 NVRQLKNAIYRALTQLDGYELRPQDILLPDY------------------------DAATV 450 NVR+L+N I + DG E+ D+ AA+ Sbjct: 362 NVRELENLIEGLVITCDG-EIAADDLPTAMRVKECPLPAAAMGGPGGAMATGGPSPAASC 420 Query: 451 AVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLRE 503 + ++ + FE L + ++ + + A+RLG+ T I K+++ Sbjct: 421 PDATPDWDRPYKDVLAAFEHDYLERAIAHFGTVGEAARRLGLDRTTIFRKMKK 473 >UniRef50_A6TJU2 Putative PAS/PAC sensor protein n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TJU2_ALKMQ Length = 630 Score = 505 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 129/487 (26%), Positives = 233/487 (47%), Gaps = 29/487 (5%) Query: 33 IDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEP 92 I P E E+ S M E R+ V + A+++ + Sbjct: 156 IAPQYGCKSILIESGEEAVLSAMNEAIRVLKAAQVES-------DRMQRFMAVIDYTSDG 208 Query: 93 VLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVI 152 V++ D +V + N + + G ++ + +Q+ + +ES P + + Sbjct: 209 VIATDKDGRVTVFNRNAEVILGTTKEKAKGQLISQIFKYDQISKLIES-PSIKVDSIYDL 267 Query: 153 NGQNFLMEITPVYLQDENDQHVL----TGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVA 208 + P+++ ++ ++ + L IR+ +L F IV Sbjct: 268 GSTKLALNHVPIFVDGDDTGSIITFQDISKIQSLEKKIRL--ELSKKGFVAKYNFQDIVH 325 Query: 209 VSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPE 268 S M+ +++A+ + +LITG +G GK++FA + H S R P++ +NCA++P Sbjct: 326 QSSLMQKCIKRARTYGGYDSSVLITGPSGVGKEIFAQSIHNISKRKTGPFVPINCAALPA 385 Query: 269 DAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTF 320 + +ESELFG+ GK G FE A+ G++ LDEI E+ +QA+LLR + + Sbjct: 386 NLIESELFGYVEGAFTGAKKGGKPGIFEMAHKGTIFLDEISELPLDLQARLLRVIQEREV 445 Query: 321 RRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPL 380 RVG++ + VDVR+ICAT ++L E+V +G FR DL +R+N+L+LN+P L + +DI L Sbjct: 446 MRVGDNKVIPVDVRIICATNRDLKEMVIEGDFRRDLLFRINILSLNIPSLNERREDIELL 505 Query: 381 TELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDI 440 E F++ F DE K+++D L R+ + GNVR+L+ I RA+ G E++ DI Sbjct: 506 IEYFISLFCDEYKKGSMKISSDTLGYLERHHYDGNVRELQGMIERAVITCTGDEIKLDDI 565 Query: 441 LLPDYDAATVAVGEDA----MEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTA 496 + D + + E SL E+ ++ + + + S +++ LG+ + Sbjct: 566 IESDAYNVDQIISNHSNIFDEEYSLKELEDKYIKYI---SNKYSDSKQEICHILGIDRST 622 Query: 497 IANKLRE 503 + K ++ Sbjct: 623 LWRKKKK 629 >UniRef50_Q0SR73 Sigma-54 dependent transcriptional regulator n=1 Tax=Clostridium perfringens SM101 RepID=Q0SR73_CLOPS Length = 455 Score = 505 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 130/448 (29%), Positives = 225/448 (50%), Gaps = 27/448 (6%) Query: 82 LSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESE 141 L L +P ++ + ++K+D N + K + N N L S Sbjct: 11 LENLTNHIPLGLIFISPENKIDFINKKAESFLNSKSKSVENIDIFSFFPQLNELINNSSS 70 Query: 142 PQDSHNE--HVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVA-AQ 198 +++ + ++G + ++I P+ ND + G +++L+ + + + + Sbjct: 71 KKNNQKDALVTSLDGNKYNLDICPI-----NDGDIFVGWLLILKDLKEIISTVNKYSNQE 125 Query: 199 DVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPY 258 F I+ SP++K V+ A+ ++ + +LITG++G GK+L A + H AS + P+ Sbjct: 126 AAYTFDDIIGESPQLKKVLRDAELISKSPSTVLITGESGCGKELLAQSIHNASNVSNGPF 185 Query: 259 LALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAK 310 +ALNC +IP+ +ESELFG+ GK G FE A+GG++ LDEI EM MQ Sbjct: 186 IALNCGAIPKTLIESELFGYEEASFTGSRKGGKPGKFELADGGTIFLDEICEMPIEMQVT 245 Query: 311 LLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPL 370 LLR + +G R+G ++ ++VR+I AT KNL E ++KG FREDLYYRLNV+ L+LPPL Sbjct: 246 LLRVIQEGVVTRIGGKTQIPINVRIIAATNKNLKEEIKKGTFREDLYYRLNVMPLHLPPL 305 Query: 371 RDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQ- 429 +D D+ L F+ + + P + L + Y WPGN+R+L+N + + Sbjct: 306 KDRLGDVPILINYFLNIKSQKLHKGIPNINQKLYKKMISYCWPGNIRELENCVENIVNLN 365 Query: 430 -LDGYELRPQ-------DILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNY- 480 YE+ D L + ++ + E E S+ + E+ + + + Sbjct: 366 GSTSYEINFDECHCLKTDNLGNPINPNSLDLPESYNENSIKPLI-ILEKEAIEKALCTFD 424 Query: 481 PSTRKLAKRLGVSHTAIANKLREYGLSQ 508 + K + LG+S A+ NK++ YG+++ Sbjct: 425 GNITKASNALGISRNALYNKIKRYGINK 452 >UniRef50_A8ZTX6 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A8ZTX6_DESOH Length = 588 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 138/443 (31%), Positives = 208/443 (46%), Gaps = 26/443 (5%) Query: 78 EHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLI------NG 131 + L++ L E VL+ D+ K+ + + ++ G + + Sbjct: 147 YKANIERLIDNLHEGVLAHDLGRKIFFFSKGAERITGLSAVDVIGKNCHDVFVPRLCGEN 206 Query: 132 FNFLRWLE---SEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRM 188 +F E + + I GQ +++T V L+D + G V L Sbjct: 207 CSFCDGCEPPTFQKKSYSTVAPEIEGQRKELDVTVVPLRDPAG--RIQGVVAALADQTAF 264 Query: 189 GRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACH 248 ++ + F+ I+ +P+M+ + Q + L++ P+ I+G+TGTGK+L A A H Sbjct: 265 KEAVR--GQKGEDGFAGIIGRTPEMRSLFHQIRDLSVYDVPVNISGETGTGKELVARAIH 322 Query: 249 QASPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIG 301 S R P++ +NC ++PE VESELFGH A KKG FE A+ G++ LDE+ Sbjct: 323 GESTRRNGPFVPINCGALPEGLVESELFGHVRGSFSGAVRDKKGRFELAHNGTIFLDEVA 382 Query: 302 EMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLN 361 E+ Q KLLRFL +G +VG + + VDVRVI AT KNL + V KG FREDLYYRLN Sbjct: 383 ELPMSTQVKLLRFLQEGVLEKVGSEKQTSVDVRVISATNKNLKKEVAKGTFREDLYYRLN 442 Query: 362 VLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKN 421 V+ ++LPPLR DI L FV A + D +L YAWPGNVR+L+N Sbjct: 443 VVPIHLPPLRMRKNDIPLLANYFVRHAAMGARTGNVTITDDAMGLLAEYAWPGNVRELQN 502 Query: 422 AIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYP 481 I + + G ++ + T + LD T E T L + Sbjct: 503 IIQFLVIKASGNKITAAHLPPEIQGDGTPLPQKRGRRNKLD--TGSVE----TALAKAGG 556 Query: 482 STRKLAKRLGVSHTAIANKLREY 504 + K A+ LGV + L ++ Sbjct: 557 NKAKAARLLGVGRATLYRFLNDH 579 >UniRef50_A6LV27 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Clostridium RepID=A6LV27_CLOB8 Length = 568 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 138/481 (28%), Positives = 221/481 (45%), Gaps = 30/481 (6%) Query: 52 SSLMAEIRRIAGVTDVRTVP--WMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPAS 109 + I +TD + + + AL +++A E + ++ K + + Sbjct: 92 EMVEGSIEIFTDITDQKKMQNKINLDKDYIDALLTVMDAFNEWFVVINEKGIITSISDDY 151 Query: 110 CQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPV----- 164 + G D +I + L++ D I G + P+ Sbjct: 152 KEFLGC--DNPIGKKVEDIIENTKMGKVLKTGIADIGGIQ-EIKGNKMIAMRVPIKKDGK 208 Query: 165 --------YLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHV 216 +D +D H L+ ++ L + + + I+ S K++ V Sbjct: 209 VISAVGKVVFKDISDFHALSKKLLDLEKEVEFYKSKIAENKTAKYSVENIIGHSNKIRKV 268 Query: 217 VEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELF 276 + K+A ++ +LI G++GTGK++ A++ H +S R P++ +NCASIP + +ESELF Sbjct: 269 KDLIGKVANTNSNVLINGESGTGKEMIAHSIHNSSKRYLAPFIKINCASIPAELLESELF 328 Query: 277 GHAPEGKKG--------FFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHE 328 G+ G FE ANGGS+ LDEIG+M+ MQAK+LR + + +G Sbjct: 329 GYEEGAFTGAKKGGKKGKFELANGGSIFLDEIGDMNINMQAKILRVIQEREIESIGGSGV 388 Query: 329 VHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARF 388 VDVR+I AT KNL ELV+KG FREDLYYRLNV+ + PPLR+ +DI L + Sbjct: 389 KSVDVRIITATNKNLEELVKKGEFREDLYYRLNVVKIVSPPLRERKEDIPALANALRIKI 448 Query: 389 ADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYE-LRPQDILLPDYDA 447 A V ++ D L Y WPGN+R+L+N I RA+ LD ++ + + A Sbjct: 449 AKRLDVYVEGISKDAIECLGNYDWPGNIRELENVIERAINLLDSNIMIKTEHLSKRFTSA 508 Query: 448 ATVAVGEDAMEGSLDEITSRFERSVLTQ-LYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 + L I E+ V+ + L RN + K A+ LG+S + K+ E+ L Sbjct: 509 KYKRYSDKNEY--LKTIVEEVEKEVILECLNRNNWNKNKTAQILGISRAGLYKKIEEFNL 566 Query: 507 S 507 Sbjct: 567 K 567 Score = 82.7 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 12/123 (9%), Positives = 44/123 (35%), Gaps = 6/123 (4%) Query: 79 HLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWL 138 +++ + E ++ +D K + + N + +FG +R +++ + Sbjct: 4 EECFELIIQNVNEALIVIDKKGIILVINKKAEDMFGISSERNLGKYIGEVLPEIQIPKIT 63 Query: 139 ESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQ 198 ++ + ++ + ING+ + P+ ++ G++ + + + Sbjct: 64 KAGKAEL-SQMIFINGKEIISNRIPIIKD-----EMVEGSIEIFTDITDQKKMQNKINLD 117 Query: 199 DVS 201 Sbjct: 118 KDY 120 >UniRef50_Q8EN58 Transcriptional regulator n=1 Tax=Oceanobacillus iheyensis RepID=Q8EN58_OCEIH Length = 466 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 128/467 (27%), Positives = 221/467 (47%), Gaps = 34/467 (7%) Query: 74 PSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFN 133 + + ++ L E ++ VD K V + A C + +++ + +I Sbjct: 1 MKQLPKEWIEQIITLLNERIVVVDAKGIVVYMDQAYCDFIERPVNQCIGYHVKDVIENTR 60 Query: 134 FLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLT-------------GAVV 180 +++ + + H ING + P+ + DE V T + Sbjct: 61 MHVIVKTGKIELEDFH-PINGSVMIANRFPIVVDDEIVGAVGTVMFPTPENLRDFKNKIQ 119 Query: 181 MLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGK 240 L + + R N + F ++ S + H+ E A+ +A + +LITG++GTGK Sbjct: 120 QLVTDLSYYRDKVNNELRSKYTFKDLIGNSQEFVHLKEFAETVAGNDSSVLITGESGTGK 179 Query: 241 DLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH--------APEGKKGFFEQANG 292 +LFA A H +S R P+L +NC++IPE+ ESELFG+ GKKG FE A+ Sbjct: 180 ELFANAIHNSSLREQHPFLPINCSAIPEELFESELFGYSEGAFTDAKKGGKKGLFEIAHN 239 Query: 293 GSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMF 352 G++ LDEIGE+ MQ+KLLR L + + +G + ++VR+I AT +NL+++V+ G F Sbjct: 240 GTIFLDEIGELPLSMQSKLLRVLQEREIQPIGAQKYISINVRIIVATNRNLLKMVENGEF 299 Query: 353 REDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAW 412 REDLYYRLNV+ +++PPLR +DI + + + ++ ++ L + W Sbjct: 300 REDLYYRLNVIHIDIPPLRKRKEDIKQTAYQLLRKLEHKFYRSDVMISKEVIKQLEMHHW 359 Query: 413 PGNVRQLKNAIYRALTQLDGYELRPQDILLPDYD-----------AATVAVGEDAMEGSL 461 PGNVR+L+N + RA+ L + Q + L D E + Sbjct: 360 PGNVRELENVLERAINMLKENTILLQHLPLYIRDIILEERMNIEQTEKNRGNEIVYLKKM 419 Query: 462 DEITSRFERSVLTQLY-RNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 E+ + E+ + + + AK LG+ T++ +K +Y ++ Sbjct: 420 KEVIADAEKQAIQNALSHTKGNKLEAAKLLGIGKTSLYDKCHQYSIN 466 >UniRef50_A9HYL1 Propionate catabolism operon regulator n=3 Tax=Bordetella RepID=A9HYL1_BORPD Length = 640 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 139/456 (30%), Positives = 220/456 (48%), Gaps = 26/456 (5%) Query: 61 IAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRL 120 ++ V + + R L+ +L +L + VL+VD ++ NP+ +L + Sbjct: 187 FEDAIELARVARLEAGRYE-QLNGVLHSLQDAVLAVDRDHRIIAVNPSMQRLLDHDAAAM 245 Query: 121 RNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVV 180 +L L++ +S + + G+++L P+ ++ + GA + Sbjct: 246 VGQPLDRLRPELTLRPTLDTGQPESAG-LLRLGGRDWLANRMPI-----RERGAVVGAAL 299 Query: 181 MLRSTIRMGR-------QLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLIT 233 L R+ Q + F++++ SP V A++ A +LI Sbjct: 300 TLYDAGRIHEADTSLRVQQRRRQNTAKYQFAELIGRSPPFLRAVRTARRYAQTDLTVLIA 359 Query: 234 GDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKG 285 G++G GK+LFA A H S RA +P++A+NCAS PE +ESELFG+ GK+G Sbjct: 360 GESGVGKELFAQAIHNESRRADRPFVAVNCASFPESLLESELFGYEEGAFTGSRRGGKRG 419 Query: 286 FFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVE 345 FE A+ G++ LDEIG+M +Q++LLR L + R+G + VDVR+I AT + L + Sbjct: 420 LFEAAHTGTLFLDEIGDMPLPLQSRLLRVLQEREVTRLGATAAIPVDVRIIAATHQPLSD 479 Query: 346 LVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRP--KLAADL 403 +V + FR+DLYYR+N L L +PPLR+ P DI PL E + R G P L A Sbjct: 480 MVAQRRFRQDLYYRINTLRLEVPPLRERPDDIQPLLETLIDRCLRRLGAPLQAAGLVAPW 539 Query: 404 NTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDE 463 L RYAWPGNVR+L+N R L Y D+ + E + DE Sbjct: 540 LPRLRRYAWPGNVRELENISERMAVFLMQYP-HAADVDHDALRHDCPELFEAGAAVAADE 598 Query: 464 ITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIAN 499 S+ +R L L + ++ A+RLG+S + + Sbjct: 599 GRSQRDR-ALRALEACGGNRQEAARRLGISRSTLWR 633 >UniRef50_B2A7X5 Putative sigma54 specific transcriptional regulator n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A7X5_NATTJ Length = 594 Score = 504 bits (1299), Expect = e-141, Method: Composition-based stats. Identities = 147/510 (28%), Positives = 237/510 (46%), Gaps = 57/510 (11%) Query: 44 AELEFESFSS--LMAEIRRIAGVTDVRTV-PWMPSEREH--LALSALLEALPEPVLSVDM 98 + F ++ E G+ V+++ + H L +L L E V + Sbjct: 96 DNMRFHGIKRAPVLNENEECLGLITVKSICDAFSNRLWHVVDYLQMVLNNLNEGVFILSS 155 Query: 99 KSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFN--FLRWLESEPQDSHNEHVVINGQN 156 +V N A + +A L+ ++S H+ N + Sbjct: 156 DGEVLYQNNALAGILAT-------QSAQSTQPEIPRELLQKIQSGSGGDFVYHL--NNKV 206 Query: 157 FLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQN-------------VAAQDVSAF 203 + + + P + + ++T + + + QL +Q+ F Sbjct: 207 YSVNVAPFPCNESEENKLVT--IKNVTHITELQEQLSRANSKLNYLENTVSKISQEHYTF 264 Query: 204 SQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNC 263 I +VSPKM+HV+E A+++A A +LI G++GTGK+L A A HQ S R P + +NC Sbjct: 265 GNIFSVSPKMEHVIELAKQVAPTKATVLINGESGTGKELLANAIHQHSDRKDAPLITINC 324 Query: 264 ASIPEDAVESELFGH--------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFL 315 +IPE+ ESE FG+ EGK G FE A+GG++ LDEIG++ MQAKLLR L Sbjct: 325 GAIPENLAESEFFGYCSGAFTGAKKEGKPGAFEIADGGTLFLDEIGDLPLNMQAKLLRAL 384 Query: 316 NDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQ 375 +G+F RVG V VDVR+I AT +NL ELVQ FREDLYYR+NV L LPPLR+ + Sbjct: 385 QEGSFYRVGGIEPVSVDVRIIAATNQNLEELVQNNQFREDLYYRINVANLELPPLREKTE 444 Query: 376 DIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYEL 435 DIMPLT+ F+ F+ G+ ++ + L Y WPGNVR+LKN I R + ++ Sbjct: 445 DIMPLTKRFIDHFSQVHGIEITEIEQAVMDTLEEYHWPGNVRELKNVIERLVIFSTQGKI 504 Query: 436 RPQDILLPDYDAATVAVGED-----------------AMEGSLDEITSRFERS-VLTQLY 477 + + + + + + + + ER +L L Sbjct: 505 SIKALPSYLHPGPKFGSQDQQQLHEQLHRQHSQDDNFSNKSNSESKIDELERKTILDSLK 564 Query: 478 RNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 ++ + K+A+ L + + + +++ ++ Sbjct: 565 KHSFNKAKVARELNIPRSTLYYRMKVLNIN 594 >UniRef50_Q3ACC6 Sigma-54 dependent transcriptional regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ACC6_CARHZ Length = 480 Score = 504 bits (1299), Expect = e-141, Method: Composition-based stats. Identities = 124/460 (26%), Positives = 216/460 (46%), Gaps = 25/460 (5%) Query: 70 VPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLI 129 + +++ L +L++L E + D K ++ N A ++ G + + ++ Sbjct: 23 TDLVLAQKMREELLKILDSLQEGIEIADEKGEIKYINQAFTRITGIEKEERIGKNIFEVS 82 Query: 130 NGFNFLRWLESEPQDSHNEHVVINGQ-NFLMEITPVYLQDENDQHVLTGAVVMLRSTIRM 188 + ++ + +V + + P+++ + + + +++ Sbjct: 83 PYGALAQAIKLMKPVIGHRTLVGGSKAEVVSNAVPIFIDGKLSGGAVVF--QTVTDILKI 140 Query: 189 GRQLQNVAAQD-------------VSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGD 235 QL F+ I+ K+ + A+K A A +L+ G+ Sbjct: 141 SEQLSKTQEMLESFSQKLSELSGCRYTFNDIIGKDEKLLEAKKIAKKAAKSDATVLLLGE 200 Query: 236 TGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPEG-------KKGFFE 288 +GTGK++FA A H S R+ KP++ +NCA+IPE+ +ESELFG+ K G FE Sbjct: 201 SGTGKEMFAQAIHMESSRSSKPFVKINCAAIPENLLESELFGYEKGAFTGATKTKMGKFE 260 Query: 289 QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQ 348 A+ G++ LDEIG+++ +QAKLLR L D F RVG + DVRVI AT ++L +V+ Sbjct: 261 LAHQGTIFLDEIGDLNLFLQAKLLRVLEDKQFERVGGIETITTDVRVIAATNRDLKRMVK 320 Query: 349 KGMFREDLYYRLNVLTLNLPPLRDC-PQDIMPLTELFVARFADEQGVPRPKLAADLNTVL 407 + FREDLY+RL V+ + LPPLR +DI+ + E + R G L + Sbjct: 321 ERKFREDLYFRLKVIDIELPPLRKRNKEDILLIAENIIGRLNRRFGKKVKGLTPKAQELF 380 Query: 408 TRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAME-GSLDEITS 466 Y WPGN+R+L+N + R + +D L A V E + L +I Sbjct: 381 QNYPWPGNIRELENLLERTIILVDDEYLDEHHFYGYFSKANEPPVLEKSFPIKKLGDIEK 440 Query: 467 RFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 L + R+ + + +A++LG+S ++ NK++ Y L Sbjct: 441 EVISMALEKYGRSLSAKKMIAEKLGISLASLYNKIKRYNL 480 >UniRef50_A1VAP6 Sigma54 specific transcriptional regulator, Fis family n=7 Tax=Bacteria RepID=A1VAP6_DESVV Length = 473 Score = 504 bits (1298), Expect = e-141, Method: Composition-based stats. Identities = 146/457 (31%), Positives = 217/457 (47%), Gaps = 31/457 (6%) Query: 75 SEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNF 134 ++ + ++ + L + + + N QL G LR L+ F Sbjct: 1 MKKIIEHIESIFDILSDGIYITQRDGTTLLVNRMYEQLTGLSFKDLRGRNVHDLVADGIF 60 Query: 135 -----LRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGA-----VVMLRS 184 + ++ +HV + ++ PV+ + V+T A + R Sbjct: 61 DTILNPEVVRTKRPAVSVQHVR-QSKKIILRGYPVFDEHGEVCLVVTFARDITMITQFRE 119 Query: 185 TIRMGRQLQNV-------AAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTG 237 I +QL + SQ V S M+ V++ Q++A A +LI G+TG Sbjct: 120 QIAQQKQLIETFSDRIECMLHEQVRNSQPVFESEVMQQVLDLLQRVAATDANILILGETG 179 Query: 238 TGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGFFEQ 289 GKD+FA H+ SPR+ K +L ++C SI E+ +ESELFG+ P GK G+FE Sbjct: 180 VGKDVFARLAHEYSPRSSKMFLKVDCGSIAENLIESELFGYVPGAFSGASSKGKAGYFEI 239 Query: 290 ANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQK 349 A+GG+V LDEIGE+ MQAKLLR L D RVG VDVR+I AT ++L E + Sbjct: 240 ADGGTVFLDEIGELPLPMQAKLLRVLQDREVMRVGSSQARKVDVRIIAATNRDLAEDAKA 299 Query: 350 GMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTR 409 G FR DLYYRLNV L+LPPLR+ QDI+PL E F+ RF + L L Sbjct: 300 GKFRSDLYYRLNVAVLDLPPLRERQQDIIPLVERFLDRFNAKYRRNM-TLPKGTRQALQN 358 Query: 410 YAWPGNVRQLKNAIYRALTQLDGYELRPQDILL----PDYDAATVAVGEDAMEGSLDEIT 465 Y WPGNVR+++N I + +G+ ++P+ + + L EI Sbjct: 359 YKWPGNVREMQNLIQSLVVTCEGHSIKPEHLPPHIQKAARNRTAYTPPAPDDARPLKEIM 418 Query: 466 SRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLR 502 + ER +L + R + S K+A+ +S T + KLR Sbjct: 419 ADIEREILEEAVRTHGSVCKVARMYKISRTTLFRKLR 455 >UniRef50_A4J443 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Peptococcaceae RepID=A4J443_DESRM Length = 455 Score = 504 bits (1298), Expect = e-141, Method: Composition-based stats. Identities = 117/410 (28%), Positives = 196/410 (47%), Gaps = 21/410 (5%) Query: 112 LFGQKLDRLRNHTAAQLIN----GFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQ 167 + ++ + I + + + + + ++++ Sbjct: 52 ITDIRMPEKDGFGLLEQIKSAGLNIPVILMTAFGTTEVAIKAMKLGAFDYIV-------- 103 Query: 168 DENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLS 227 D + + S I+ SP M++V + ++A + Sbjct: 104 KPFDLDEFLDLIQRAVAQSDTVATFPQAQEPASSTGINIIGNSPSMRNVYKDIGRVADSN 163 Query: 228 APLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPEG----- 282 A +LI G++GTGK+L A A H S R P++ +NCA++P+ +ESELFG+ Sbjct: 164 ATVLIQGESGTGKELVARAIHYNSSRRNNPFIKVNCANLPDSLLESELFGYEKGAFTGAS 223 Query: 283 --KKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQ 340 K G FE A+ G++ DEIGE+S QAKLLR + + F RVG + V+VR++ AT Sbjct: 224 SLKVGRFELAHEGTIFFDEIGEISLATQAKLLRAIQEKEFDRVGGTKTIKVNVRILAATN 283 Query: 341 KNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLA 400 + L + V++G FREDL++RLNV+ + +PPLRD +DI L F+A++ E + Sbjct: 284 RKLKQSVREGEFREDLFFRLNVVNIEIPPLRDRKEDIPLLIAHFLAKYNKEFNKEIKGFS 343 Query: 401 ADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAME-G 459 + +L Y WPGNVR+L+N + R++ G + P+DI L + E E Sbjct: 344 KEAIKLLIGYDWPGNVRELENVVERSIIMARGAIIVPEDIQLGATVSQQPTELEILDENL 403 Query: 460 SLDEITSRFERS-VLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQ 508 SL +I S ER +L L N +AK L ++ ++ K++E G+ + Sbjct: 404 SLKQIISDVERKVILKALEENNWCRTTVAKVLKINRRSLYAKMKELGIEE 453 >UniRef50_B1YLR1 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Exiguobacterium RepID=B1YLR1_EXIS2 Length = 551 Score = 504 bits (1298), Expect = e-141, Method: Composition-based stats. Identities = 137/478 (28%), Positives = 225/478 (47%), Gaps = 23/478 (4%) Query: 49 ESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPA 108 E E + G + V + L A++ E + + + + NPA Sbjct: 77 EQLIHYFPEAAVLPG--EFVRVLLERLAEKERMLEAIIHCTSEAISVANQAGETMLINPA 134 Query: 109 SCQLFGQKLDRLRNHTAAQLI--NGFNFLRWLESEPQDSHNE-HVVINGQNFLMEITPVY 165 ++ G + A+ I LR LE+ + + ++ ++ PV Sbjct: 135 YTRMTGYTEGDVIGKPASADIGMQESVHLRVLETGESVRDARMKIGQDRRDIIVNAAPVV 194 Query: 166 LQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQ-----DVSAFSQIVAVSPKMKHVVEQA 220 + + V G + + + ++L+ + F I+A S M+ VV+QA Sbjct: 195 VDGQVRGSV--GVIRDISEMKALTKELKAAKQKIRTLEAKYTFDDIIAESESMRFVVDQA 252 Query: 221 QKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAP 280 + A + +LI G++GTGK+LFA+A H AS R + ++ +NCA+I +ESELFG+ Sbjct: 253 KLAATMPVNVLIRGESGTGKELFAHAIHAASDRRYEQFVRVNCAAIAPSLLESELFGYEE 312 Query: 281 E--------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVD 332 GK+G+FE+A+GGS+ LDEIGE+ +QAKLLR L + RVG V VD Sbjct: 313 GAFSGARRGGKRGYFEEAHGGSLFLDEIGELPLDVQAKLLRVLQENEVVRVGGAKAVPVD 372 Query: 333 VRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQ 392 VR+I AT NL + + G FREDLYYR+N L +++P LR+ P D+ PL+ + + Sbjct: 373 VRIIAATNANLEQKIITGEFREDLYYRINRLPIHIPALRERPDDLAPLSTHLLRKLNQSY 432 Query: 393 GVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLD--GYELRPQDILLPDYDAATV 450 G +++ D + + W GNVR+L+N I RAL D LR + L + Sbjct: 433 GRSVERVSEDALEAIRQQTWKGNVRELENVIGRALIFTDKTEQVLRKGHLQLVSPTPSKR 492 Query: 451 AVGEDAMEGSLDEITSRFERSVLTQLYR-NYPSTRKLAKRLGVSHTAIANKLREYGLS 507 + L + S E ++ + + + AK+LG+S A+ K+ + + Sbjct: 493 SERPKKEIKHLSDEMSYVEEQLIREALDVVNGNKTEAAKQLGISLRALYYKVERFNIQ 550 >UniRef50_A8IQ96 Transcriptional regulator n=18 Tax=Proteobacteria RepID=A8IQ96_AZOC5 Length = 694 Score = 503 bits (1297), Expect = e-141, Method: Composition-based stats. Identities = 139/504 (27%), Positives = 229/504 (45%), Gaps = 50/504 (9%) Query: 53 SLMAEIRRIAGVTDVRTVPWMPSE-REHLALSALLEALPEPVLSVDMKSKVDMANPASCQ 111 AE G+ + + + ++ L +L A+ E + V+ + + NPA+ Q Sbjct: 189 EARAEAFMHEGLAEWQRADRLFADIERENRL--ILRAVGEGIYGVNAEGRTTFVNPAAEQ 246 Query: 112 LFGQKLDRLRNHTAAQLING--------FNFLRWLESEPQDSHNEHVVINGQNFLMEITP 163 + G + + +++ N + + +D HV N + P Sbjct: 247 ILGWTAEEMIGRDMHAMVHHHHHDGSAYPNTTCPIYAAFRDGAVHHVE-NEVFWHRSGRP 305 Query: 164 VYLQDE----NDQHVLTGAVVMLRSTIRMGRQLQNVAA---------------------- 197 V+++ D+ L GAVV+ R + + + A Sbjct: 306 VWVEYTSTPLRDRGRLIGAVVVFRDVTQKREANEQLRAALAEVDRLRERLEMENAYLQEE 365 Query: 198 -QDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGK 256 + ++ I+ S +K V+ Q +A A +LITG++GTGK+L A A H AS R + Sbjct: 366 IRAETSHRGIIGRSEAIKKVLRQVDLVAPTDATVLITGESGTGKELIARAIHDASERRER 425 Query: 257 PYLALNCASIPEDAVESELFGHAPE-------GKKGFFEQANGGSVLLDEIGEMSPRMQA 309 P + +NCA+IP + ESE FGH + G FE A+ G++ LDE+GE+ +Q+ Sbjct: 426 PLIRVNCAAIPRELFESEFFGHVRGAFTGALRDRVGRFELADRGTLFLDEVGEIPLELQS 485 Query: 310 KLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPP 369 KLLR L +G F R+GE+ VDVR+I AT ++L V+ G FREDL+YRL+V+ + P Sbjct: 486 KLLRVLQEGQFERIGEERTRQVDVRIIAATNRDLKAAVRAGRFREDLFYRLDVMPIESVP 545 Query: 370 LRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQ 429 LR+ +DI L F+ + +L+A L Y WPGNVR+L+N I R + Sbjct: 546 LRERREDIPLLAAHFLDGVRRKPADGPLQLSAGDMRRLQTYDWPGNVRELQNVIERGIIL 605 Query: 430 LDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYP---STRKL 486 L D+ + A V A + + R S+L L Sbjct: 606 ARNGRLHI-DLPDREAPATAQPVPPSAELETEADRRLRLRTSILAALEAAGGKVSGPGGA 664 Query: 487 AKRLGVSHTAIANKLREYGLSQKK 510 A+RLG+ T +A++++ G++ + Sbjct: 665 AERLGLKPTTLASRMKTLGITPGR 688 >UniRef50_B8FV05 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfitobacterium hafniense DCB-2 RepID=B8FV05_DESHD Length = 687 Score = 503 bits (1296), Expect = e-141, Method: Composition-based stats. Identities = 126/484 (26%), Positives = 223/484 (46%), Gaps = 24/484 (4%) Query: 42 NFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSK 101 + ++ S +MA I + +++ + L A L + + V++V+ Sbjct: 212 DMQNIQAHSLGWVMAMGYAIENLLELKKQN-NSMTLMNGTLEATLSLIDDGVITVNENCY 270 Query: 102 VDMANPASCQLF-GQKLDRLRNHTAAQLINGFNFLRWLES--EPQDSHNEHVVINGQ--- 155 + N + +++ ++ + + ES + + + + Sbjct: 271 ISHINKEGINILASNPQEKIIGRHLSEFVKDDQLIIINESIHKGRFVQEYETIFMNRGRD 330 Query: 156 -NFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAA-QDVSAFSQIVAVSPKM 213 +L+ I P+ +GAV+ L + ++ R + N F I S + Sbjct: 331 TQYLLNIRPIADGQGKYN---SGAVIRLSRSDKVNRMVANRGGTPASFKFEDIKGKSTSL 387 Query: 214 KHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVES 273 ++ AQ +A +L+ G++GTGK+LFA + H S +A P++A+NCAS+P + +ES Sbjct: 388 AKSIQIAQNVARTGYNVLLIGESGTGKELFAQSIHN-SYKADGPFVAVNCASLPRNLIES 446 Query: 274 ELFGHAPE--------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGE 325 ELFG+ G+ G E ANGG++ LDEIG+M +Q LLR L + R+G Sbjct: 447 ELFGYEGGTFTGADRNGRPGKIELANGGTLFLDEIGDMPLEIQPVLLRVLEEKRVTRLGG 506 Query: 326 DHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFV 385 + VD RVI AT KNL +V++ FREDLY+RL++ + +PPLR+ D++ L E F+ Sbjct: 507 SRGIPVDFRVIAATNKNLSLMVKEKTFREDLYFRLSIFKITIPPLRERDHDVILLAEYFI 566 Query: 386 ARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDY 445 + + PKL+ + Y+WPGN+RQL+NA+ + + ++ Sbjct: 567 EDISKKLMSEVPKLSPASYQKIKEYSWPGNIRQLQNAMVYGVNMSTNGVIELSNLPDEMT 626 Query: 446 DAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYG 505 + + +L EI + L + + ++ LG+ T I KL+EYG Sbjct: 627 SNDYFRTKVNTRKLTLAEIEKEV---IFEALSQTGNDASEASRILGIGRTTIYRKLKEYG 683 Query: 506 LSQK 509 + K Sbjct: 684 IDIK 687 >UniRef50_Q5WL87 Transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WL87_BACSK Length = 569 Score = 503 bits (1296), Expect = e-141, Method: Composition-based stats. Identities = 147/472 (31%), Positives = 217/472 (45%), Gaps = 30/472 (6%) Query: 54 LMAEIRRIAGVTDVRTVPWMPSE-REHLALSALLEALPEPVLSVDMKSKVDMANPASCQL 112 L+ E G E + L A+LE E ++ VD + K+ N A Sbjct: 102 LIKEGNEYIGAVTRENWRRAREEYEQKAILEAILENAYEGIVIVDKQGKIVKMNNAYRSF 161 Query: 113 FGQKLD-RLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDEND 171 G K + + A +I ++S + E I GQN ++ P++ Sbjct: 162 IGGKDEAEVEGKFVADVIENTRLHEVVKSGIPE-RGEIQRIEGQNMVVHRIPIWQNHRVV 220 Query: 172 QHV---LTGAVVMLRSTIRMGRQLQNV--------AAQDVSAFSQIVAVSPKMKHVVEQA 220 V + V L ++ R + S +++ S ++ A Sbjct: 221 GAVGMLIFEGVSELYEILQRARVFLSEESLSTEPTKKNATSVERRLIGRSEALQSCKCFA 280 Query: 221 QKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAP 280 +K+A A +L+TG+TGTGK+LFA HQ S +A P++A+NCA++PE +E+ELFG+ Sbjct: 281 RKVARTKATVLLTGETGTGKELFARLIHQMSNQANGPFVAINCAAMPETLLEAELFGYEE 340 Query: 281 E--------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVD 332 G G FEQA+GG++ LDE GEMS +QAKLLR L RVG V D Sbjct: 341 GAFTGARRGGAVGKFEQASGGTLFLDEAGEMSNALQAKLLRVLETKQVDRVGSCRPVQTD 400 Query: 333 VRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQ 392 R+I AT +L +LV G FR+DLYYRL +TLN+PPLR+ +DI L F+ RFA E Sbjct: 401 FRLIAATNADLNQLVADGKFRKDLYYRLVAITLNIPPLRERKEDIPYLISAFMDRFAQEY 460 Query: 393 GVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAV 452 G+ + D Y WPGNVR+L NAI + + ++ + + A Sbjct: 461 GLRHKRFCEDALHAFLEYDWPGNVRELANAIDYIMAIGEEEKVTSNTLPPFLRNHAAKKE 520 Query: 453 GEDAMEGSLDEITSRFERSVLTQLY-RNYPSTRKLAKRLGVSHTAIANKLRE 503 SL + R E+ + Q + K AK LG+ + KL+E Sbjct: 521 -------SLKTVARRSEKERIEQAIVLANGNKAKAAKLLGIHRATLYRKLKE 565 >UniRef50_C0QEM3 Sigma-54 dependent transcriptional regulator (PAS domain protein) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QEM3_DESAH Length = 575 Score = 503 bits (1296), Expect = e-141, Method: Composition-based stats. Identities = 125/451 (27%), Positives = 211/451 (46%), Gaps = 24/451 (5%) Query: 78 EHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLI--NGFNFL 135 E +L +L++L + +V+ + N A+ ++ G L L G Sbjct: 129 EEQSLKIILDSLNMGIFTVNRGGLITFFNRAAEKVSGFSRMNLLGKACGTLFAGEGKQVC 188 Query: 136 RWLESEPQD------SHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMG 189 + L+ D E + G+ + + L +++ + GA+ + + Sbjct: 189 QALKQVLADRIPATAVRGELLSFQGEVIPISGDYIPLLNDHGG--VIGALAAFQDMTLVQ 246 Query: 190 RQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQ 249 + Q + Q F ++ P M+ + + + +A + LLI G TGTGKDL A H Sbjct: 247 QLNQAIKGQ--YHFHHMIGKDPAMQRIFDMVRVVAKTESTLLIEGATGTGKDLLAKIIHS 304 Query: 250 ASPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGE 302 S R+ +P++ +NCA+IP++ VESE+FG+ A K G F +A+ G++ LDEIG+ Sbjct: 305 ESNRSKRPFVKVNCAAIPDNLVESEIFGYVRGAFTGADRDKPGRFSEAHSGTIFLDEIGD 364 Query: 303 MSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNV 362 + +QAKLLR L D F +G VDVR++ AT + L LV + +FREDL+YRLNV Sbjct: 365 LPLALQAKLLRVLEDREFYPLGSRKTQRVDVRILSATNRKLESLVAQKLFREDLFYRLNV 424 Query: 363 LTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNA 422 L ++LPPL + D+ L + + A P P + +L Y +PGN+R+L+N Sbjct: 425 LRIDLPPLMNRRGDLPLLIRHLMRKQAGIMKKPFPDICETAMEILLNYHYPGNIRELENI 484 Query: 423 IYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLD-----EITSRFERSVLTQLY 477 I A+ +R + D + + D T++ + +L L Sbjct: 485 IEHAIILCQEEVIRSCHLPAYILDCSGLEGKRDGFSDPSTVDPGFSGTAQERQQILDVLR 544 Query: 478 RNYPSTRKLAKRLGVSHTAIANKLREYGLSQ 508 N + A LG+ T + K+R++ +S Sbjct: 545 ANRWHRQTTANLLGMDRTTLWRKMRKFKISP 575 Score = 57.3 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 47/135 (34%), Gaps = 10/135 (7%) Query: 85 LLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQL------INGFNFLRWL 138 +L+ V+ VD ++ N ++ L D + ++ F Sbjct: 12 ILDHFNIGVILVDNHRRIRQCNTSARNLLRLSEDEIIGGDCQEIFCGLPCFPTCPFHDPE 71 Query: 139 ESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQ 198 S+ +D E + G+ + L D DQ + G V +L+ + + + Sbjct: 72 TSDVRDMDVEFLDEAGEKHRVTRVGAPLLD--DQGRVQGCVTVLQDHSPFNELVNRIHYE 129 Query: 199 DVSAFSQIVAVSPKM 213 + S +I+ S M Sbjct: 130 EQSL--KIILDSLNM 142 >UniRef50_B8FQM8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FQM8_DESHD Length = 694 Score = 503 bits (1296), Expect = e-141, Method: Composition-based stats. Identities = 138/522 (26%), Positives = 236/522 (45%), Gaps = 33/522 (6%) Query: 11 LGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTV 70 +G ++D + + F + + A + I + Sbjct: 176 VGSAAPIMDESGKVIASIILGQPIEYRLEGEYFNNFLSHTLGLITALAKAIETQLKLNQT 235 Query: 71 PWMPSEREHL-------------ALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKL 117 + +E L LE + E ++++D ++ N ++F + Sbjct: 236 NELLTESNSNLIKVIHELNTTMDTLETTLEVMDEGIITLDPSGRIINMNREVTRIFKIRP 295 Query: 118 DRLRNHTAAQLIN-GFNFLRWLESEPQDSHNEHVVING--QNFLMEITPVYLQDENDQHV 174 + + + ++ + + E++VI Q +++ I PV + Sbjct: 296 EEKSHKNINEFLHTHSQVAALITAGKSVDIEENLVIGNDEQPYIINIRPVLNKKT---QQ 352 Query: 175 LTGAVVMLRSTIRMGRQLQNVAAQ-DVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLIT 233 + AV+ L ++ Q N +F IV S ++K V A++ A S +L+ Sbjct: 353 IEAAVLRLNHVDKVNAQAANRTGSIATYSFECIVGESEEIKKAVSIARRFATSSENVLLM 412 Query: 234 GDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKG 285 G++GTGK+LFA A H S P++A+NCA++P + +ESELFG+ G+ G Sbjct: 413 GESGTGKELFAQAIHNHSC-PLGPFMAVNCAAMPRELIESELFGYEGGSFTGAERTGRPG 471 Query: 286 FFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVE 345 E A+GG++ LDEIG+M +QA LLR L D R+G VD R+I AT KNL + Sbjct: 472 KIELAHGGTLFLDEIGDMPLELQAVLLRALEDKQIMRIGGRRYKKVDFRLIAATNKNLFK 531 Query: 346 LVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNT 405 +V++ +REDLY+RL+VLT+ +P LR+ DI L++ F+ + +QG PK+ Sbjct: 532 MVKERQYREDLYFRLSVLTITIPSLRNRKNDIDVLSQYFIKNYCQKQGWKTPKITKGALR 591 Query: 406 VLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEI- 464 + Y WPGNVRQL+NA+ A+ + + P Y + +D + D + Sbjct: 592 KIQEYEWPGNVRQLQNALIYAVNSAHNDVIDTDSL--PQYILLDSSPFQDEPNFTTDSLS 649 Query: 465 TSRFERSVLT-QLYRNYPSTRKLAKRLGVSHTAIANKLREYG 505 E++ + L S AK LG+S + + KL++YG Sbjct: 650 LEHLEKNAIKTALLHAKNSIPDAAKLLGISRSTLYRKLKDYG 691 >UniRef50_Q2RHS4 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=Q2RHS4_MOOTA Length = 748 Score = 502 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 125/362 (34%), Positives = 191/362 (52%), Gaps = 14/362 (3%) Query: 160 EITPVYLQDENDQHVLTGAVVMLRSTI-RMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVE 218 + VY ++ L + L + + ++L+ + F Q+V S M+ V Sbjct: 386 KAVAVYHGLAENRMCLPYFIAQLEKSNFHLRQELKAFQGK----FGQLVGNSAAMQEVYR 441 Query: 219 QAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH 278 +K+A A +LI G++GTGK+L A A H S R+ P++++NCA++PE +ESELFGH Sbjct: 442 LIEKVAKTDATVLIRGESGTGKELVARAIHYHSRRSEAPFVSINCAALPETLLESELFGH 501 Query: 279 APEG-------KKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHV 331 A KKG FE+AN G++ LDEIG++S +Q+KLLR L +G F RVGE V Sbjct: 502 ARGAFTGAVTAKKGLFEEANEGTIFLDEIGDISLGLQSKLLRVLQEGEFLRVGETRPTRV 561 Query: 332 DVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADE 391 +VRV+ AT ++L + V+ G FR +L YRLNV+T+ LPPLR+ DI L F+ + Sbjct: 562 NVRVLAATNRDLEKAVKDGAFRPELLYRLNVITIWLPPLRERRDDIPLLARHFLEKSCQR 621 Query: 392 QGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVA 451 G + L R WPGNVR+L+N I RA+ + + D+ + A A Sbjct: 622 LGKEVNGFTHEAMDALIRADWPGNVRELENVIERAVILTESKRIELGDLPRQFRNMAAGA 681 Query: 452 VG-EDAMEGSLDEITSRFE-RSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQK 509 G S E + +E R +L L + + A+ LG+ + + ++ Y L + Sbjct: 682 SGWAFTRGMSFKEAVAAYESRLILQALEESQGVQARAAEILGLKRSTLNEMIKRYNLMGR 741 Query: 510 KN 511 KN Sbjct: 742 KN 743 >UniRef50_A1HSK4 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HSK4_9FIRM Length = 628 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 133/476 (27%), Positives = 223/476 (46%), Gaps = 28/476 (5%) Query: 43 FAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKV 102 E + R++ + + E + ++ ++ +++VD V Sbjct: 165 LLRSGPEGIRHALELSRQMLTIQRME-------EANARRIETIINSVDYGIIAVDNAGAV 217 Query: 103 DMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEIT 162 N + +L NH R + + + + + +G+ ++ Sbjct: 218 TALNREARRLLALAHGAPDNHPLL-----VKLRRHGQLGERLTGSVERLEDGRELVINYL 272 Query: 163 PVYLQDENDQHVLT-GAVVMLRSTIRMGRQLQNVAAQ-DVSAFSQIV-AVSPKMKHVVEQ 219 P+ + E V T + + R RQ + F ++ +P M+ V+++ Sbjct: 273 PITIGGETAGAVATLQELRQFQDIERRTRQELARRGRLARHTFLELEETAAPAMRAVIDE 332 Query: 220 AQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA 279 A++ A + A +LI G+TG GK+ FA+A H ASPR P++A+NCA+IP +ESELFG+A Sbjct: 333 ARRFAAVDATILIQGETGVGKEYFAHAIHAASPRRYGPFVAVNCAAIPATVLESELFGYA 392 Query: 280 --------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHV 331 GK G FEQA+GG++ LDEIGEM+ +QA+LLR L + R+G+D + V Sbjct: 393 EGAFTGAKKGGKVGLFEQAHGGTIFLDEIGEMAEELQARLLRVLQEHEIYRIGDDRVIPV 452 Query: 332 DVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADE 391 D+RVI AT ++L +V G FREDLYYRL+VL L +PPLR QDI F+ F + Sbjct: 453 DIRVIAATNRDLRAMVAAGRFREDLYYRLDVLALEVPPLRARKQDIPLFVRKFIDEFNHK 512 Query: 392 QGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVA 451 + + +L Y WPGNVR+L N + R + G + ++ + Sbjct: 513 YRRAVQGIDDEGLALLAAYDWPGNVRELHNVVDRLMALAAGPVITATEVR--QCLERRLR 570 Query: 452 VGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 + + + R L + + ++ A+ LG+ + + KLRE G++ Sbjct: 571 SSDRPAAPGMKAAEAAAIRDALARA---NGNKQQAARLLGIGRSTLWRKLRELGIA 623 >UniRef50_Q24ZH2 Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense Y51 RepID=Q24ZH2_DESHY Length = 659 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 137/477 (28%), Positives = 226/477 (47%), Gaps = 19/477 (3%) Query: 45 ELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDM 104 ++ S + + I ++ + L A L + ++++D + Sbjct: 187 NMQAHSLGWITSMAYAIENQLKLKQAN-EELSLSNGTLEATLAVVEGGLITLDKRGMTAH 245 Query: 105 ANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVING---QNFLMEI 161 N C++ G + + + L+ S++E ++ NG + ++M I Sbjct: 246 INNEGCRILGITQEETLGEHFTKYLQNDKITGILKDGKAVSNHEIIIDNGETEKQYVMSI 305 Query: 162 TPVYLQDE-NDQHVLTGAVVMLRSTIRMGRQLQN-VAAQDVSAFSQIVAVSPKMKHVVEQ 219 P+ QD N L G V+ L + + + + A +F I P +V Sbjct: 306 YPIVPQDTCNINDKLNGIVIHLSRIENIKKLVNDWRGASATYSFEDIQGKDPLFLKIVGI 365 Query: 220 AQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA 279 A++ + L A +LI G++GTGK+LFA A H AS P++++NC+++P + +ESELFG+ Sbjct: 366 ARQYSKLYANVLIHGESGTGKELFAQAIHNASC-PEGPFISINCSAMPRNLIESELFGYE 424 Query: 280 --------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHV 331 +G+ G E AN G++ LDEIG+M +Q LLR L + RVG + V Sbjct: 425 GGAFTGAERKGRPGLIELANEGTLFLDEIGDMPLEIQPVLLRVLEEKKVMRVGGKKYIPV 484 Query: 332 DVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADE 391 RVI A+ KNL +VQ+ FREDLYYRL V L +PPLR P DI+ L + F+ + + Sbjct: 485 SFRVISASNKNLNIMVQEKTFREDLYYRLAVFKLQIPPLRKRPDDIISLAQFFIKGTSQK 544 Query: 392 QGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVA 451 G P L+ V+ YAWPGNVRQL+N++ A++ G + +D+ + T Sbjct: 545 VGRKMPVLSKAAQKVIKEYAWPGNVRQLENSMVYAVSLTQGDVIGAEDLPDDITNPITPE 604 Query: 452 VGED-AMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 + SL E+ ++ L + + A LG+ + + KL+EY L Sbjct: 605 NSRLFSSVMSLREMEITAIKN---ALEQTNQNIANAANILGLGKSTLYKKLKEYHLE 658 >UniRef50_Q8ES30 Transcriptional regulator n=1 Tax=Oceanobacillus iheyensis RepID=Q8ES30_OCEIH Length = 573 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 122/459 (26%), Positives = 212/459 (46%), Gaps = 26/459 (5%) Query: 73 MPSEREHLAL-SALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLING 131 + + E L L + + E + VD K + + N A + + AA +I Sbjct: 117 LKQKEEMLHLYEMVFDTAYEGLTVVDDKGIIRLFNEAYSRYVKVPTEEAIGKDAALIIEN 176 Query: 132 FNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQ 191 L++ + H + GQN ++ P++ ++ + ++ Q Sbjct: 177 TRLPVVLKTGVPERSQAH-RLQGQNLVVHRIPIWKDNKVVAAAGILVYEGVSEIYQVIDQ 235 Query: 192 LQNV-------------AAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGT 238 ++ + ++ F ++ SP + A+K + AP+LITG++G Sbjct: 236 MEELDKTKHSKFTKDPNKKNSLTRFEDLLGDSPCFTKTKKIARKASQSKAPVLITGESGV 295 Query: 239 GKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH--------APEGKKGFFEQA 290 GKD+ A A H SP ++++NCA+IPE +ESELFG+ GK G E A Sbjct: 296 GKDIVAQAIHNESPITRGRFISVNCAAIPEALLESELFGYSSGAFTGAEKGGKPGKIELA 355 Query: 291 NGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKG 350 + G++ LDEIG+M MQAK+LR + + + RVG +H+ ++D R+I AT K++ ++V +G Sbjct: 356 HKGTLFLDEIGDMPLTMQAKILRVIQEKSVERVGSNHQSNIDFRLITATNKDIKQMVHEG 415 Query: 351 MFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRY 410 FREDLYYRL V+ +++P LR+ +DI + +A +E G R + + + Sbjct: 416 TFREDLYYRLYVIPIHIPSLRERAEDIPIIVSHKIAELNNEYG-DRKTIDQLVVQWMYTQ 474 Query: 411 AWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEIT-SRFE 469 W GN+R+L N + R + + ++ D ++ + E E Sbjct: 475 PWKGNIRELINFLERLYVLSESQHMTLDNLPDDIDDKQRLSSYNFLANKKVAESLSEEEE 534 Query: 470 RSVLTQLYRN-YPSTRKLAKRLGVSHTAIANKLREYGLS 507 R + + + + K AK LG+S + NKL Y L Sbjct: 535 RDRIKETLEHVKGNKTKAAKLLGISRATLYNKLSRYTLE 573 >UniRef50_B8FM80 PAS modulated sigma54 specific transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=B8FM80_DESAA Length = 465 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 120/465 (25%), Positives = 203/465 (43%), Gaps = 29/465 (6%) Query: 73 MPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQL---- 128 M S +L +++ + + V+ V + + N + G + + A L Sbjct: 1 MNSSDLNLYWKTVVDTIQDGVMIVSPEGTIVSVNKGFETITGYSQSEVLGQSCALLGCSS 60 Query: 129 ------INGFNFLRWLESEP-QDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVM 181 G ++ + + + +G + L+D Q + GAV Sbjct: 61 CEIARNAEGCHWCVMFKHGRLRRQRCALIRKDGIPVQIVKNASVLKDGEGQ--IIGAVET 118 Query: 182 LRSTIRMGRQLQ-----NVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDT 236 + + + F ++ S M+ + E + AP++I G++ Sbjct: 119 ITDITDLTTKESLIASYRQELDAQDRFYGMIGASAPMQALFELIRNAGQSDAPVIIFGES 178 Query: 237 GTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE-------GKKGFFEQ 289 G GK+L A A H+A R+ PY+ +NCA++ E +ESELFGH ++G FE Sbjct: 179 GAGKELIAKAIHEAGSRSQFPYIKVNCAALNESLLESELFGHVKGSFTGAHRDREGRFEA 238 Query: 290 ANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQK 349 A+ G + LDEIG++ Q KLLR L + RVG+ + VDVR+I AT ++L L+ K Sbjct: 239 ADKGDIFLDEIGDLPLSTQVKLLRVLEEKVVERVGDHKPIQVDVRIISATNRDLQALISK 298 Query: 350 GMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTR 409 G FRED +YR+NV+ L P LR+ DI L F R + G ++ + L Sbjct: 299 GEFREDFFYRINVIPLRAPSLRERKGDIPLLARSFFNRIRMKSGKDIHGISREAMDALAN 358 Query: 410 YAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAM---EGSLDEITS 466 Y WPGNVR+LK+A+ A + P+ + P A + G Sbjct: 359 YNWPGNVRELKSALEFAFVSCHEDLIEPRHLPAPIAAEPDCAPPQPVPVQSRGPGGATLD 418 Query: 467 RFER-SVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKK 510 + +R ++ L + + A+ LG+S T++ +++ Y L+ Sbjct: 419 QVKRTRLIDALTSAKGNQSEAARILGISRTSVWAQVKRYQLNPAD 463 >UniRef50_C0CTF4 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CTF4_9CLOT Length = 670 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 132/515 (25%), Positives = 226/515 (43%), Gaps = 46/515 (8%) Query: 32 EIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPE 91 E G Y +ES S + ++ V E + L+ + Sbjct: 163 EAKRQGIPYTVVENT-YESVSIALDAALQLLNVQKQEREKRKEYEIQLQKHQMLMNYTRD 221 Query: 92 PVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVV 151 +++VD + V + N + ++F +L+ F L P+ + + Sbjct: 222 AIINVDARGMVSIMNMEARRMFHLTHS-AVGRDIRRLLPELEF-DELRRTPEQVVGQIIR 279 Query: 152 INGQNFLMEITPVYLQDENDQHV--LTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAV 209 I GQ + P+ + + + + + +S R+ QL F I+ + Sbjct: 280 IQGQLLSVNKIPIVMGGQFEGAIYFFQSVHDIQKSEQRIRLQLHQKGLVAKYHFEDILGI 339 Query: 210 SPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPED 269 S ++ V A+ A + +L+TG+TGTGK+LFA + H +SPR P++A+NCA++P+D Sbjct: 340 SDSLERVKLIARSYAQADSSILLTGETGTGKELFAQSIHNSSPRRNGPFVAINCAALPKD 399 Query: 270 AVESELFGH--------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFR 321 + S+LFG+ A GK G FE A+GG++ LDEIGE+ Q +LLR L + R Sbjct: 400 LLSSQLFGYEEGSFTGAAKGGKPGIFELAHGGTIFLDEIGEIPEETQIQLLRVLQEKEVR 459 Query: 322 RVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLT 381 R+ D + +DVRVICAT +NL V++ FR DL++R+NVL L +PPLR+ +DI L Sbjct: 460 RLSSDKVIPIDVRVICATNRNLALEVKERRFRMDLFFRINVLKLEIPPLRERKEDIPLLA 519 Query: 382 ELFVARFAD-----EQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGY--- 433 + F+ + E L + Y+WPGN+R+L+ R LD Sbjct: 520 DHFLEEYCRGGRLAEVRARMHGLYP----RMMEYSWPGNIRELQAVTERIAILLDQGFPM 575 Query: 434 ELRPQDI---------------------LLPDYDAATVAVGEDAMEGSLDEITSRFERSV 472 E+ + + E S I+ + + Sbjct: 576 EIDAHMMMEEFGYLEGEEGGMGPEPGERPGAEEQPEPDRKTEPEESASGRPISECRKEDI 635 Query: 473 LTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 + L ++ ++ A+ LG+S + + +R+Y + Sbjct: 636 IRALKNHHYRRQEAAQALGISRSTLWRLIRKYEIE 670 >UniRef50_Q2RH79 Sigma54 specific transcriptional regulator with PAS sensor, Fis family n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RH79_MOOTA Length = 562 Score = 501 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 131/431 (30%), Positives = 199/431 (46%), Gaps = 34/431 (7%) Query: 105 ANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPV 164 N L G K L ++ + L S V G+ L+ PV Sbjct: 138 INHLYASLLGAKAGALIGREVKDILPFTSLPEVLSSGMA-VAGREVAFRGKKLLLSEVPV 196 Query: 165 YLQDE-----------------NDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIV 207 L + +L + +Q D A+ I+ Sbjct: 197 KDGAGHLLGGVGKALDLEDLAAAGFSDLARRLQVLEGKVLFYQQELQSIQGDQDAWQGIL 256 Query: 208 AVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIP 267 VSP M + + A ++A A +LITG++GTGK+L A A H+ASPR +P + +NCA+IP Sbjct: 257 GVSPAMVRLKKMAARVARGEANVLITGESGTGKELLAQAIHRASPRRNEPLIKINCAAIP 316 Query: 268 EDAVESELFGH--------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGT 319 E+ +E+ELFG+ A GK G FE A+GG++ LDE+G++ MQ KLLR L + Sbjct: 317 ENLLEAELFGYEEGAFTGAARGGKPGKFELADGGTIFLDEVGDLPLSMQPKLLRVLQERA 376 Query: 320 FRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMP 379 F RVG + VDVR+I AT ++L+ L G FR DLYYRL V+TL +PPLR+ P D+ Sbjct: 377 FERVGGRRTIKVDVRIIAATNQDLLALEAAGKFRLDLYYRLAVVTLTVPPLRERPGDLEI 436 Query: 380 LTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLD--GYELRP 437 L + R L ++ + +RY+WPGNVR+L+N + A LD + Sbjct: 437 LVAAIIRRLNARYHQTVRGLDPEVQRLFSRYSWPGNVRELENVLEHAFNFLDPGEEIITL 496 Query: 438 QDILLPDYDAATVAVGEDAMEGSLDEITSRFERS-VLTQLYRNYPSTRKLAKRLGVSHTA 496 + + G + ER +L L + ++ A+ LG+ + Sbjct: 497 KHLPATMQRTIGGGGGLKLK-----SAVATAEREVILKALAAAGGNKQEAARLLGIHPSG 551 Query: 497 IANKLREYGLS 507 + KL+ Y ++ Sbjct: 552 LYQKLKRYDIN 562 Score = 50.3 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 16/120 (13%), Positives = 37/120 (30%), Gaps = 7/120 (5%) Query: 84 ALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQ 143 A+L A + ++ VD + +AN + + G LR ++ L + Sbjct: 10 AILAARRQGMIYVDAGGLIKVANSLATAILGLDGCDLRGRRLTEVFPETRLAEVLTRKGP 69 Query: 144 DSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAF 203 + + ++ P +D + + + L + A + F Sbjct: 70 LLGT-SFTAGSRIYRVDYFP------DDGGGVVLLFSDEQPETNSLKALNELYASLLDDF 122 >UniRef50_A4J616 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=A4J616_DESRM Length = 454 Score = 501 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 121/415 (29%), Positives = 201/415 (48%), Gaps = 33/415 (7%) Query: 112 LFGQKLDRLRNHTA----AQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQ 167 + K+ + L+ + D+ E + + +++ Sbjct: 53 ILDLKMPEMDGLEVLVKAKDLMPKLPIIMITAHGTIDTAIEAMKLGATDYIT-------- 104 Query: 168 DENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLS 227 D L + + ++ + ++ + QIV S + V +K+A + Sbjct: 105 KPFDLDELKMVIRQALMVNHLQEEVTFLRSELNKKYGQIVGNSQAIHDVCGLIEKVADSN 164 Query: 228 APLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE------ 281 A +L+TG++GTGK++ A + HQ S R KP++ +NCA++PE +ESELFGH Sbjct: 165 ATVLVTGESGTGKEITALSIHQLSSRRDKPFVPINCAALPESLLESELFGHEKGAFTGAV 224 Query: 282 -GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQ 340 K G FE AN G++ LDEI EM MQ KLLR L + F RVG + +DVRVI AT Sbjct: 225 ARKLGRFELANQGTLFLDEITEMPLSMQVKLLRVLQEKEFERVGGTDSIKIDVRVIAATN 284 Query: 341 KNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLA 400 ++ +E ++KG FREDL+YRLNVL ++LPPLR+ +DI L F+ +F +++ Sbjct: 285 RDPMECIRKGTFREDLFYRLNVLPIHLPPLRERTEDIPLLAMHFIKKFNPS---QEQRMS 341 Query: 401 ADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGE------ 454 + +L Y WPGN+R+L+N I R++ G E++P + V Sbjct: 342 PEAMGLLISYEWPGNIRELQNVIERSIILAQGNEIKPHHLPKEIQKLDEVKNETTHGLII 401 Query: 455 --DAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 S DE+ +L L ++ + + A+ LG++ +A+ + ++Y L Sbjct: 402 NFPDDGISFDEVEKEL---ILKALEKSNGNQTRAAQLLGITRSALLYRAQKYRLK 453 >UniRef50_A0YEC8 Transcriptional regulatory protein n=2 Tax=Proteobacteria RepID=A0YEC8_9GAMM Length = 639 Score = 501 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 134/540 (24%), Positives = 237/540 (43%), Gaps = 57/540 (10%) Query: 25 GIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRR----IAGVTDVRTVPWMPSE-REH 79 I+ +++ IYL+ + +L + ++G++ V + E + Sbjct: 88 EINGHCSQVEGECHIYLSLQ--PYAEIQALRKQSDAHQHYLSGISHWSRVSGIFQEFQNE 145 Query: 80 LALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLI---------- 129 L LLEA E + VD + NPA+ ++ G + ++ Sbjct: 146 NQL--LLEAAGEGIYGVDANGITNFVNPAAERILGYTAAEMAGRNMHAMVHHSHSDGSHF 203 Query: 130 --NGFNFLRWLESEPQDSHNEHVVING----QNFLMEITPVYLQDENDQHVLTGA----- 178 + + + + TP+ + V+ Sbjct: 204 NVKDCPIFSVFHDGAVQVVEDDIFWSKFGVPIDVEYTSTPILVNGYILGAVVIFRDVSQK 263 Query: 179 -------------VVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAM 225 V L+ + M + +I+ S ++++++Q +A Sbjct: 264 KAYKKALLEALAEVESLKDRLEMENAYLQEEIKSKFNHHRIIGSSAPLQNILQQIDLVAP 323 Query: 226 LSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE---- 281 A +LITG++GTGK+L A A H++S R+G+ + +NCA+IP+D ESE FGH Sbjct: 324 TKATVLITGESGTGKELLARAIHESSGRSGRSLIRVNCAAIPQDLFESEFFGHVKGAFTG 383 Query: 282 ---GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICA 338 + G FE A+GGS+ LDE+GE+ +Q KLLR L + F RVGE VDVR+I A Sbjct: 384 ASSDRPGRFELADGGSIFLDEVGEIPLHLQGKLLRVLQEQEFERVGEAITRTVDVRIITA 443 Query: 339 TQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPK 398 T ++L ++V +G+FREDLY+RLN+ + PLR DI LT+ F+ + A + Sbjct: 444 TNRDLKQMVAEGLFREDLYFRLNIFPIESIPLRQRKDDIPQLTQHFLGQAAIRANKSDLR 503 Query: 399 LAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDA---ATVAVGED 455 + L Y WPGNVR+L+N I R + + G +R ++L D +A A ++ Sbjct: 504 IPLHEIEKLKAYDWPGNVRELENVIERQVILIRGNIVRFNNLLSSDNNAIIEGAGADKDN 563 Query: 456 AMEGSLDEITSRFERS-VLTQLYRNYP---STRKLAKRLGVSHTAIANKLREYGLSQKKN 511 E + + E+ ++ L+ A L + T +++++++ G++ + + Sbjct: 564 KYEILTEPQLRQMEKQNIIRALHYCKGRVFGDGGAADLLSIKPTTLSSRIKKLGINTRDS 623 >UniRef50_Q89W03 Transcriptional regulatory protein n=1 Tax=Bradyrhizobium japonicum RepID=Q89W03_BRAJA Length = 480 Score = 501 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 138/459 (30%), Positives = 209/459 (45%), Gaps = 29/459 (6%) Query: 77 REHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLD-RLRNHTAAQLINGFNFL 135 R L LE L E +++D +V N G + ++I Sbjct: 17 RAMETLFERLEHLCEGAIAIDRSGRVVYVNEKYVTAMGLSHESEALGRPIEEVIPNSLMR 76 Query: 136 RWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVL--------------TGAVVM 181 R +E+ + + + G+ ++ P+ + N + G V Sbjct: 77 RVVETGEPIILDI-MELGGEQLVVTRMPIEDEKGNIIGAIGFVLYDRLEGLKPLLGRVAQ 135 Query: 182 LRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKD 241 L + +R+ R+ + A F V + + E A + A S +L+TG+TGTGK+ Sbjct: 136 LENDLRLARRQLSHARAARFTFDDYVGATAGIAQAKELAARAARQSVTVLLTGETGTGKE 195 Query: 242 LFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGFFEQANGG 293 + A A H AS RA KP++++N A+IP+ +ESE FG AP G+ G F A+GG Sbjct: 196 MLAQAIHNASARAEKPFVSVNVAAIPDTLIESEFFGAAPGAYTGADRKGRDGKFRIADGG 255 Query: 294 SVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFR 353 ++ LDEIGEM ++QAKLLR L + +G D VDVRVI AT +L + V +G FR Sbjct: 256 TLFLDEIGEMPLQLQAKLLRVLQEREIEPLGSDKVTRVDVRVIAATNVDLHKRVSEGTFR 315 Query: 354 EDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWP 413 DLYYRLNVL++ LPPLR C D+ + + + ++ L RY WP Sbjct: 316 ADLYYRLNVLSIELPPLRHCLDDLPEICGRLLEDISASGDYLNARITPSGLAALARYGWP 375 Query: 414 GNVRQLKNAIYRALTQLDGYELRPQD----ILLPDYDAATVAVGEDAMEGSLDEITSRFE 469 GNVR+L+N + RAL D L D + + T + E + FE Sbjct: 376 GNVRELRNILERALILSDSGRLTSDDFDRILPVGAETVPTAPSRPAGLVLPYAEAEAEFE 435 Query: 470 RSVLTQLY-RNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 + L Q + + AK L +S KL ++GL+ Sbjct: 436 KHTLEQALAASNGQISEAAKMLQISRATFYKKLAKFGLA 474 >UniRef50_Q02BY0 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q02BY0_SOLUE Length = 447 Score = 501 bits (1290), Expect = e-140, Method: Composition-based stats. Identities = 131/457 (28%), Positives = 223/457 (48%), Gaps = 32/457 (7%) Query: 71 PWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLI- 129 P + L ++ + L + ++ D + + N A+ +LFG D + ++ Sbjct: 3 KLTPGWQRTSVLESVFDQLSDALVLYDPEFCITGVNHAAEKLFGMSSDEMLGKHCQEIFK 62 Query: 130 -----NGFNFLRWLES--EPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVML 182 L L + NG L+ + + D+ LTG V + Sbjct: 63 CSVCEPNCGVLVGLNQPLASANCTVRLHTPNGMERLVVMRTNQMFDDAGH--LTGVVATI 120 Query: 183 RSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAP-LLITGDTGTGKD 241 + + +++A S M+ V+ ++++ A +L+ G+ GTGKD Sbjct: 121 KDITE----------EAAPQKREVIAESGPMREVMNFVRRVSASEATTILLEGENGTGKD 170 Query: 242 LFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPEG-------KKGFFEQANGGS 294 L A H S R +P++A+NCA+IPE +ESELFG+ K+G FE A+ G+ Sbjct: 171 LVAKTLHYQSVRQAEPFIAINCAAIPETLLESELFGYEKGAFTDARAQKRGIFELADKGT 230 Query: 295 VLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFRE 354 + LDEIGE+ +QAKLLR L + TFRR+G ++H+D+RVI AT KNL E V++G FR+ Sbjct: 231 LFLDEIGEIPLMLQAKLLRVLEEQTFRRLGGLKDIHLDLRVIAATNKNLREAVKEGAFRQ 290 Query: 355 DLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPG 414 DLY+RLNV+ + +PPLR+ P+DI+P+T+ F+ + + + +L + WPG Sbjct: 291 DLYFRLNVIQILIPPLRERPEDIVPMTKFFIEHYNRKFKRQIEGVTDSAAKLLMAHDWPG 350 Query: 415 NVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDE---ITSRFERS 471 NVR+L+NAI R++ +G + + + +A L ERS Sbjct: 351 NVRELRNAIERSMILEEGAYITAASLPISISRPENGLPLGNAAGMELPTDGLSLEDNERS 410 Query: 472 VL-TQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 +L L + + + A+ L ++ + K++++ L Sbjct: 411 LLVRALEKTEGNQTQAARLLRITRDTLRYKMKKFNLR 447 >UniRef50_B8DQ12 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DQ12_DESVM Length = 474 Score = 501 bits (1290), Expect = e-140, Method: Composition-based stats. Identities = 132/459 (28%), Positives = 211/459 (45%), Gaps = 35/459 (7%) Query: 85 LLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQD 144 + + LP +L D + AN A +L G++ + ++I + + + Sbjct: 17 IFDHLPMGILYCDASYVIRFANKAYAELLGKRPHDIIGRNITEVIPSSRAPEVMTTGQAE 76 Query: 145 SHNEHVVING----QNFLMEITPV--------------YLQDENDQHVLTGAVVMLRSTI 186 + I G Q ++ PV D ++ L+ + L + Sbjct: 77 -MGDLCSIPGPRADQKLVVNRIPVRDAAGALVGMISQAIFNDPSELKRLSNKIEQLGHKL 135 Query: 187 RMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYA 246 ++ + + + S M + ++ + A + AP+L+ G TGTGK+L A+A Sbjct: 136 SQYKRRMAATLHAQYSLASLKGESASMHQIKDRLRSYARMDAPVLVLGATGTGKELAAHA 195 Query: 247 CHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGFFEQANGGSVLLD 298 H S RA P +++NCA+IP+D ESELFG+ GK G E A+GG++ LD Sbjct: 196 LHAESTRAAGPLVSINCAAIPKDLFESELFGYVRGAFSGAHHSGKMGQIELADGGTLFLD 255 Query: 299 EIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYY 358 EIG+M + QAKLLR L T RVG VD R+I AT +N+ ++VQ G FREDLYY Sbjct: 256 EIGDMPLQAQAKLLRVLESRTICRVGAVTAEPVDFRLIAATNRNIKDMVQAGTFREDLYY 315 Query: 359 RLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQ 418 R+N + +P LRD +DI+PL F+AR G + L + WPGN+RQ Sbjct: 316 RINTFIIEIPSLRDRKEDILPLAHHFLAR----MGHEGVTFTPAAVSALQSFEWPGNIRQ 371 Query: 419 LKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEG---SLDEITSRFERSVLTQ 475 L NAI A T +G + + T V + L I + E +++ Sbjct: 372 LHNAILHAATMREGSAIDVCALPPEIRPVHTSPVAPCPLPQDRSDLAGILAHNEAALIEN 431 Query: 476 LYR-NYPSTRKLAKRLGVSHTAIANKLREYGLSQKKNEE 513 R + + A LGVS + K++++G+ ++ + Sbjct: 432 ALREQGGNVTRAASALGVSRATLYEKMKKHGVHAVRSRD 470 >UniRef50_B5WAL2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Burkholderia sp. H160 RepID=B5WAL2_9BURK Length = 595 Score = 500 bits (1288), Expect = e-140, Method: Composition-based stats. Identities = 145/518 (27%), Positives = 237/518 (45%), Gaps = 39/518 (7%) Query: 21 LVLRGIDLRGIEIDPIGRIYLNFAELEFESFS----SLMAEIRRIAGVTDVRTVPWMPSE 76 L R I + + + EL + + R+ +++ + + + Sbjct: 87 LATREIPVIFMTGLTDTIDKVKGLELGAVDYITKPFQHEEVLARVNTHLELQRLK-LRLQ 145 Query: 77 REHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGF--NF 134 + LS ++E+ + +++ D ++ + N A+ Q+F + + + Sbjct: 146 KSEERLSRIIESATDAIVAFDSDGRITLFNRAAEQMFRCPANAAVGQACKAFFSPSLYDL 205 Query: 135 LRWLESEPQDSHNE-------HVVINGQNFLMEIT---------PVYLQDENDQHVLTGA 178 + Q V +G++F +E + P+Y+ D A Sbjct: 206 VGDFMRGNQRRAPIWLPDGHSAVRADGESFRIEASLSSAEACDQPIYILFIRDIEERRKA 265 Query: 179 VVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGT 238 V + + R LQ+ + + + +V ++ V++ +++A A +L+TG+TGT Sbjct: 266 EVEVGQLRGLNRYLQDELLEAEAG-ADLVGT-AGLQGVMQHVRQVAGTDASVLVTGETGT 323 Query: 239 GKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE-------GKKGFFEQAN 291 GK+L A A H+ S R+GKP + LNCA +P + VESELFGH K G FE A+ Sbjct: 324 GKELIAQALHRMSARSGKPLVKLNCAVLPANLVESELFGHEKGAFTGALARKAGRFELAD 383 Query: 292 GGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGM 351 G++ LDE+GE+ +QAKLLR L +G F R+G DVR+I AT +NL E G Sbjct: 384 EGTLFLDEVGELPLDLQAKLLRVLQNGEFERLGSIRTQKTDVRIIAATNRNLAEEAATGR 443 Query: 352 FREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYA 411 FR DLYYRLNV + LPPLR P+DI L E FV +A + G +A VL Y Sbjct: 444 FRADLYYRLNVFPIELPPLRARPEDIEQLVEHFVRHYAAKYGRHIDAVADAQLNVLRAYR 503 Query: 412 WPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERS 471 WPGNVR+L++ I RA+ G +L D A +L++ Sbjct: 504 WPGNVRELQHVIERAVILTQGSQLALGDW-------FRDATPPACEALTLEDAERAHILK 556 Query: 472 VLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQK 509 VL Q A+RLG+ T + ++++ +++K Sbjct: 557 VLEQTDWRVSGKAGAAERLGLPPTTLESRMKRLAITRK 594 >UniRef50_Q2LRH6 Transcriptional regulator with sigma 54 interaction domain n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LRH6_SYNAS Length = 592 Score = 500 bits (1288), Expect = e-140, Method: Composition-based stats. Identities = 127/484 (26%), Positives = 232/484 (47%), Gaps = 36/484 (7%) Query: 58 IRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKL 117 + R A V+D ++ + L ++ + + +L D + V N A ++ Sbjct: 110 LLRDATVSDKIRAELKSCKKLNKELEGIIASSHDGILITDGEGNVLKINDALLRITELTR 169 Query: 118 DRLRNHTAAQLINGFNFLRW-----LESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQ 172 + H L +F E + + G+ ++ TP++ N Sbjct: 170 EHFLGHKMESLHENGHFHAESIESRARKEQKTVTGIQKIRTGKEVMVTSTPMFDDQGNIL 229 Query: 173 HVLTGA-----VVMLRSTIRMGRQLQNVAAQDVSAF-------SQIVAVSPKMKHVVEQA 220 ++T A ++ L+ + R++ + + + ++++ SP M ++E + Sbjct: 230 RMVTNARDMSEIINLQEQLAQSREVSSRLQTEFNRMLEDDLRANEMITESPTMYRIIEMS 289 Query: 221 QKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAP 280 +++A +LI G++G GK++ A H S R ++ +NC +IP+ +ESELFG+ Sbjct: 290 RRIAGSEVTVLIQGESGVGKEVLAKLIHVWSKRR-GAFIKVNCGAIPQHLLESELFGYNR 348 Query: 281 E--------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVD 332 GK G FE A G++ LDEI ++ +Q K L+ + D F R+G + +D Sbjct: 349 GAFTGANREGKPGIFELAAEGTLFLDEIEDLPLDLQVKFLQVVQDRAFIRLGGTRVIKLD 408 Query: 333 VRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQ 392 VR I A+ + L +LV + FREDL+YRLNV+ + +PPLR +D+ L F+ R+ + Sbjct: 409 VRFIAASNRELNKLVAERKFREDLFYRLNVVPITIPPLRQRKEDVPLLVNHFLNRYNAKY 468 Query: 393 GVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDI---------LLP 443 GV +A L + Y WPGN+R+LKN I R + G + + + L Sbjct: 469 GVE-KTMAPALLSNFMNYPWPGNIRELKNMIERLVITCSGNIIDVEAMGTKLNISSRNLT 527 Query: 444 DYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLRE 503 D A A ++ +L E+ E+++L+ + Y ++R++ + LG+SHTA+ KL++ Sbjct: 528 DQTVAPEAGHKEEPLSTLKEVVEEAEKNILSGALKKYRNSRQIGRVLGISHTAVLKKLKK 587 Query: 504 YGLS 507 Y L+ Sbjct: 588 YHLA 591 Score = 57.7 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 44/126 (34%), Gaps = 8/126 (6%) Query: 85 LLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQD 144 +L ++ +L+VD K + N + + +L + A + L ++ S PQ Sbjct: 24 VLNSINYGILAVDRKGMISACNAVARKFLDIDG-QLIGNPVASVPQASELLDFIHSNPQH 82 Query: 145 SHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFS 204 H + G+ + + +D+ V+ + I R + Sbjct: 83 HHERRITFQGRTLCVHS----ISGSDDETVILLRDATVSDKI---RAELKSCKKLNKELE 135 Query: 205 QIVAVS 210 I+A S Sbjct: 136 GIIASS 141 >UniRef50_C8QHJ7 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Enterobacteriaceae RepID=C8QHJ7_9ENTR Length = 652 Score = 499 bits (1287), Expect = e-140, Method: Composition-based stats. Identities = 132/443 (29%), Positives = 212/443 (47%), Gaps = 25/443 (5%) Query: 71 PWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLIN 130 + R ++LE L E V+ D ++ N + Q+F Sbjct: 215 QQLMLRRLLAEQQSILETLNEGVIVCDRHGRIKTLNRYARQIFSGLDPDAGTIDVLLQPQ 274 Query: 131 GFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGR 190 G + L ++ + L+ + P G V+ LR R+ Sbjct: 275 GASLLTMPFCNDRELQFMPDGVQSIPCLISLMPAPDG---------GRVLSLRENQRIRA 325 Query: 191 QLQNVAA-QDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQ 249 + V F I +P+++ +++A+ + + +L+TG++GTGK+LFA A H Sbjct: 326 ITRRVMGVSASYTFDMIRGHAPRVQQAIQKARASSRTDSTVLLTGESGTGKELFAQAIHN 385 Query: 250 ASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGFFEQANGGSVLLDEIG 301 ASPR + ++ALNC ++P D V+SELFG+ G G FE A+GG++ LDEIG Sbjct: 386 ASPRQQEAFIALNCGALPRDLVQSELFGYVDGAFTGSRRGGSPGKFELADGGTLFLDEIG 445 Query: 302 EMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLN 361 EM Q LLR L + R+G + + V+VR+I AT NL++ V+KG FR DLYYRLN Sbjct: 446 EMPLEAQTSLLRVLQESEVVRIGAANPLKVNVRIIAATHCNLLDAVEKGAFRRDLYYRLN 505 Query: 362 VLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKN 421 V++L +PPLR+ +DI L F+ P+++ + L + WPGNVR+L+N Sbjct: 506 VVSLAIPPLRERQEDIPGLVNTFILALCARLKRIAPQVSPEAMRCLQAWHWPGNVRELEN 565 Query: 422 AIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYP 481 + R + +G E+ QD+ V L + + VL + + Sbjct: 566 LVERMVNLCEGLEIDRQDLPDDMVQRQQPPVQ-------LPSLQENERQHVLQVVAEQHG 618 Query: 482 STRKLAKRLGVSHTAIANKLREY 504 + R+ A+ LG+S TA+ NKL ++ Sbjct: 619 NLRQSAQLLGISRTALYNKLNQW 641 >UniRef50_Q17ZX8 Putative sigma-54 interacting protein n=8 Tax=Clostridium RepID=Q17ZX8_CLOD6 Length = 591 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 121/432 (28%), Positives = 207/432 (47%), Gaps = 19/432 (4%) Query: 87 EALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAA---QLINGFNFLRWLESEPQ 143 + + V+S+D+ K+D N +LF K D + I + + + + Sbjct: 165 NNMDKAVVSIDVDGKIDKYNSKFKELFNIK-DSITGKNIFVELDFIKKPSINNFKKDKSC 223 Query: 144 DSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAF 203 + + + + I + L++E L G V+ + + Sbjct: 224 SFFYKRYGYDSKG-IYNINKIVLKNE-----LKGYVIDFIDKRDAIKNYNKMNKDYRIKL 277 Query: 204 SQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNC 263 I+ S +++ ++A + ++ +LITG++GTGK+LFA A H S R P++A+NC Sbjct: 278 ENIIGESVAIRNSKKEALIASKSTSTVLITGESGTGKELFARAIHNHSNRVDNPFIAVNC 337 Query: 264 ASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFL 315 A+IP++ +ESELFG+ GK G FE A+ GS+ LDEIG+MS +Q+KLLR L Sbjct: 338 AAIPDNLLESELFGYEEGAFTGAKKGGKLGMFEVAHKGSIFLDEIGDMSLHLQSKLLRVL 397 Query: 316 NDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQ 375 + ++G V +DVR+I AT K+L ++VQ G FREDLYYRLNV+ + LP LR+ + Sbjct: 398 QEKELNKIGSKSNVSIDVRIIAATNKDLEKMVQNGTFREDLYYRLNVIPIKLPSLRERKE 457 Query: 376 DIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYEL 435 DI + + V ++ + + + + + Y WPGN+R+L+N I ++ + Sbjct: 458 DIPLIIKHMVKEYSKKLDKNVIDIDSRVVDAMMEYKWPGNIRELQNIIEYSVNMSSSSII 517 Query: 436 RPQDILLPDYDAATVAVGEDAME-GSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSH 494 I + + + + LDE+ L + AK LG+S Sbjct: 518 TMNVIPQKIKNTSVEELEVKSDRIIPLDELEKIEIIKALNKYKDYKKDKELTAKALGISR 577 Query: 495 TAIANKLREYGL 506 + K+ +Y + Sbjct: 578 ATLYRKIEKYNI 589 >UniRef50_Q027A1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q027A1_SOLUE Length = 450 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 137/465 (29%), Positives = 208/465 (44%), Gaps = 41/465 (8%) Query: 64 VTDVRTVPWMPSEREHLALSALLE-----ALPEPVLSVDMKSKVDMANPASCQLFGQKLD 118 + V + E LSA + + E + VD V L KL Sbjct: 5 ILVVEDEEKLRRVIELQLLSAGFDVDKAASAEEGLKIVDRADMV---------LTDLKLP 55 Query: 119 RLRNHTAAQLI----NGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHV 174 + LI + + ++ E + +FL+ Sbjct: 56 NMDGQEFLSLIRRQNSHVPVVMMTAFGNVETAVEAMKAGATDFLL--------KPFSLDH 107 Query: 175 LTGAVVMLRSTIRMGRQLQNVAAQ--DVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLI 232 L V + + + + A F IV SP M+ + +++ A +L+ Sbjct: 108 LMQVVDKALEVRALREENRELKAALGRRYEFDNIVGRSPAMQEIFAAIERVGPSRATVLL 167 Query: 233 TGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPEG-------KKG 285 TG++G GKDL A A H SPR +P + +NC +IPE+ +ESELFG+ K G Sbjct: 168 TGESGVGKDLIARAIHFHSPRKDRPLVKINCTAIPENLMESELFGYEKGAFTGAQTTKPG 227 Query: 286 FFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVE 345 FEQA+ G+V LDEIG++ +Q KLLR L + F R+G + H+DVR++ AT ++L Sbjct: 228 KFEQADTGTVFLDEIGDVPAAIQVKLLRVLQEREFERLGSNVTRHIDVRLVAATNQDLRA 287 Query: 346 LVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNT 405 +++G FREDLYYRLNV+ LN+PPLR+ DI L FV + A + G + Sbjct: 288 ALEQGTFREDLYYRLNVVPLNIPPLRERKVDIPFLANHFVHKLAPDTGCQVESITDAGME 347 Query: 406 VLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGED---AMEGSLD 462 L Y WPGNVR+L+N I R+L G +L DI L ++ SLD Sbjct: 348 KLMAYHWPGNVRELENVIERSLVMATGTQLDADDIKLESAPRPRAQGNDNHFLPEGLSLD 407 Query: 463 EITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 + R L + + + A+ LG++ A+ +L + GL Sbjct: 408 QYEQEIIREALRRA---DGNKSQAARLLGLTRNALRYRLTQMGLE 449 >UniRef50_B9XM81 Sigma54 specific transcriptional regulator with PAS/PAC sensor, Fis family n=1 Tax=bacterium Ellin514 RepID=B9XM81_9BACT Length = 501 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 145/489 (29%), Positives = 236/489 (48%), Gaps = 25/489 (5%) Query: 49 ESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPA 108 + L I + G+ + + ++E+L E +L D V AN Sbjct: 13 DEVELLRNRITELEGLLGGQQNLKNLLGQREEFYRTVIESLAEGLLITDPNDHVIYANLR 72 Query: 109 SCQLFGQKLDRLRNHTAAQLI-NGFNFLRWLESEPQDSH-------NEHVVINGQNFLME 160 ++ G + L A +L+ + + + + + ++ + +G + Sbjct: 73 MEEITGYPVSELIGAVAYELLTDKAQWPQMTKRNQERVAGKSEFYEHQLLRKDGTRHWVS 132 Query: 161 ITPVYLQDENDQHV-LTGAVVMLRSTIRMGRQLQNVAAQ-DVSAFSQIVAVSPKMKHVVE 218 + ++ + + GAV +++ + + + + + F I+A SP +K V++ Sbjct: 133 VKATPYKNSKGEIIGTVGAVSCIQTQKSLELENEYLLDEIRSERFGAIIASSPALKKVLQ 192 Query: 219 QAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH 278 Q + +A A +LI G++GTGK+L A A H S R GKP + +NCASIP++ ESE FGH Sbjct: 193 QIEVVAPTQANVLILGESGTGKELVARAIHDLSERKGKPLVRVNCASIPKELFESEFFGH 252 Query: 279 -------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHV 331 A + + G FE ANGGS+ LDEIGE+ +Q+KLLR L +G F RVGED V Sbjct: 253 VRGAFTGAIKDRVGRFELANGGSLFLDEIGEIPLDLQSKLLRVLQEGQFERVGEDRTRTV 312 Query: 332 DVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADE 391 +VR+I AT ++L+ + G FR DLYYRL+V + +P LR+ P+DI PL E FV + A+ Sbjct: 313 NVRIIAATNRDLLTEAKAGRFRLDLYYRLSVFPIEIPALRERPEDIGPLAEHFVKQSANR 372 Query: 392 QGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQ-----DILLPDYD 446 GV RP+L L Y WPGNVR+L+N + RA+ L+ + + P Sbjct: 373 LGVTRPRLTKADVRELEGYDWPGNVRELQNVVERAVILARSGRLKFELGNNSERPFPPSA 432 Query: 447 AATVAVGEDAMEGS---LDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLRE 503 G + S L + + + L Q A L + T +A++++ Sbjct: 433 RVPAPDGSIDHQPSLGELKQQEKQVILNALKQAQGRIYGEEGAAAILSMKPTTLASRIQR 492 Query: 504 YGLSQKKNE 512 YGL + + Sbjct: 493 YGLKKADFK 501 >UniRef50_B8FQQ1 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfitobacterium hafniense DCB-2 RepID=B8FQQ1_DESHD Length = 717 Score = 498 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 135/504 (26%), Positives = 228/504 (45%), Gaps = 36/504 (7%) Query: 26 IDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSAL 85 I I+ +++ ++ +L + L+A A + T H L Sbjct: 227 ITAITKAIEAQLKLHKSYEKLADNNQQLLLANSELSAANQQILT--------THDLLRTT 278 Query: 86 LEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAA-QLINGFNFLRWLESEPQD 144 L E ++++D + + N + ++ D N L L W+ Sbjct: 279 LSLTGEAIITIDCQGNILEMNETARKILQIPPDSQENVNITGYLSKNCLLLDWVAEGKDL 338 Query: 145 SHNEHVVING---QNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMG-RQLQNVAAQDV 200 + E + G Q++++ + V ++N AV+ ++ + Sbjct: 339 TDKEEIFYFGNTPQSYIVSMKVVLGDNKNGGL----AVLRFQNARTYNLNATKRAGTNAS 394 Query: 201 SAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLA 260 F ++ SP K + A+K + SA +L+ G++GTGK+L A + H R P++A Sbjct: 395 FHFDDLIGESPSFKGTLSLAKKFSKTSANILLLGESGTGKELLAQSIHND-YRPEGPFIA 453 Query: 261 LNCASIPEDAVESELFGHAPE--------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLL 312 LNCA+IP +ESELFG+ G+ G E A+ G++ LDEIG+M +QA LL Sbjct: 454 LNCAAIPRSLIESELFGYESGSFTGADRTGRPGKIELADKGTLFLDEIGDMPLDIQAVLL 513 Query: 313 RFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRD 372 R L D R+G +VD RVI AT K+L +VQ+ FRED+Y+RL+VLT+++PPLR Sbjct: 514 RVLEDRKVLRIGGRKAKNVDFRVIAATNKDLRRMVQEKTFREDIYFRLSVLTIHIPPLRT 573 Query: 373 CPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDG 432 DI L + F++ + G + L+ + +LT Y+WPGN+RQL+NAI + D Sbjct: 574 RSGDIEKLCQYFLSNYCRSNGYGKKALSEEALYLLTSYSWPGNIRQLENAIIYGINLSDN 633 Query: 433 YELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFER----------SVLTQLYRNYPS 482 + + + A V + + + R +++ L + S Sbjct: 634 SLIEARHLPTDILGADKVEKPKRPPAMEIPATHEAYGRSSTLQEMELNAIIMALEKTNNS 693 Query: 483 TRKLAKRLGVSHTAIANKLREYGL 506 K AK L +S + + +LRE + Sbjct: 694 VTKAAKILNISKSTLYRRLRELNM 717 >UniRef50_UPI0001C424F3 transcriptional regulator n=2 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C424F3 Length = 475 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 125/464 (26%), Positives = 221/464 (47%), Gaps = 35/464 (7%) Query: 79 HLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNF---- 134 + L A+L+ + ++ D + V A+P ++G + +++ + L F Sbjct: 9 EIELQAILKGSKDNIVITDGEGNVLKASPNCLDIYGVEFNQILGRSVYDLEKEDIFSPSI 68 Query: 135 -LRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVV------------M 181 +R L + + +H + L PV+ ++ V++ + Sbjct: 69 TVRVLNEKKECQVLQH-TKGERTVLATGMPVFNENGELIRVISFSYDLTEIEELRENYHT 127 Query: 182 LRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKD 241 L+ + + + ++ S +K V E ++++ A ++ G++G GK+ Sbjct: 128 LQERMGLYESQIEELLEKEEQDRDVILKSKAIKRVWELVKRVSDSEATVVFLGESGVGKN 187 Query: 242 LFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGG 293 +FA A H S RA KP++ +NC++IPE ESE+FG+ +GK G E A+GG Sbjct: 188 VFARALHNGSSRASKPFIEVNCSAIPEALFESEMFGYESGSFTGAHKKGKPGMIELADGG 247 Query: 294 SVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFR 353 ++ LDEIGE+ MQAKLL+ L + T RVG +D R+I +T +NL E+ + G FR Sbjct: 248 TLFLDEIGELPLSMQAKLLKVLQEKTVTRVGGLKPHKIDFRLIASTNQNLEEMARSGSFR 307 Query: 354 EDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWP 413 +DLYYRL+V+ + +PPLR DI+ L + ++ F + V L A L Y WP Sbjct: 308 QDLYYRLHVIPIEIPPLRKRKDDILLLIQHYLHSFNQKYNVH-KHLQALALDELLAYHWP 366 Query: 414 GNVRQLKNAIYRALTQLDGYELRPQDILL--------PDYDAATVAVGEDAMEGSLDEIT 465 GNVR+L+N + R + + + D+ L ++ E + E Sbjct: 367 GNVRELENTMERLVLTSEKDRIEISDLPLLIHKQQHNSIEESTASQSNEAINASTYKEAM 426 Query: 466 SRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQK 509 ++ E+ L + +T ++A+ LG+S + + KL +Y L+ K Sbjct: 427 AQVEKHWLEHAIKQCKTTYEMAELLGLSQSTVVRKLHKYNLNSK 470 >UniRef50_A5CY60 Transcriptional activator of acetoin/glycerol metabolism n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5CY60_PELTS Length = 692 Score = 497 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 126/496 (25%), Positives = 233/496 (46%), Gaps = 27/496 (5%) Query: 32 EIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPE 91 E+ + + ++ ++ + +A + I + E + ++++++ E Sbjct: 201 ELLGVVNVAGHYLKVHQHTLGMTVALGKAIEFSLRQSRLRR-EKELAGKYIESIVDSISE 259 Query: 92 PVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLI-NGFNFLRWLESEPQDSHNEHV 150 ++++D + ++ + N + +L G K + N A ++ + S + E V Sbjct: 260 GLVALDGQGRITVLNRTAGELLGLKPQDVLNQPADAVLGQHSTVVEAFRSGEALLNRELV 319 Query: 151 ---VINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIV 207 + + + PV N + + R ++ + F + Sbjct: 320 FNCKNKQRTAIGNVVPVANNRANGVLAVFKGLSHARGFVK-----NMAGFKAYFNFEDLK 374 Query: 208 AVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIP 267 P+ VV A++ A L + +LI G++GTGK++FA A H AS + P++ +NCA+IP Sbjct: 375 GSGPRFAQVVNLARQAAALPSNVLILGESGTGKEMFAQAIHNASSSSNGPFVGINCAAIP 434 Query: 268 EDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGT 319 + +ESELFG+ EG+ G F+ A G++ LDE+ MS MQAKLLR L + Sbjct: 435 AELIESELFGYEGGAFTGAKREGQPGKFQLAAHGTLFLDEVNAMSMTMQAKLLRVLQNRC 494 Query: 320 FRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMP 379 F R+G E+ ++ R+I A+ K+L E V++G FREDL YRLNV+T+ +PPLR+ D++ Sbjct: 495 FTRIGGCVEIPLEARIIAASNKDLWEEVRQGNFREDLLYRLNVVTIEIPPLRERKDDLVH 554 Query: 380 LTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQL---DGYELR 436 L E F + + ++ ++ Y WPGNVR+L+N I R + + Sbjct: 555 LIEHFCREHSKKLKFEF-TISEPARKLMMAYHWPGNVRELENVIERCAVMALSRSSHSIE 613 Query: 437 PQDIL----LPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYR-NYPSTRKLAKRLG 491 QD+L + A + D+ E+ + + + + + A RLG Sbjct: 614 EQDLLSYPGIRKSLEADKNPAVEVPPPQFDDNLESLEKRAVEEALKQTGGNITRAAGRLG 673 Query: 492 VSHTAIANKLREYGLS 507 V+ + K+++YG++ Sbjct: 674 VTRKTLYRKIKKYGIA 689 >UniRef50_UPI0001C34ECA sigma-54 dependent transcriptional regulator n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001C34ECA Length = 644 Score = 497 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 135/488 (27%), Positives = 229/488 (46%), Gaps = 38/488 (7%) Query: 43 FAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKV 102 F +SF + +R A ++ + + + LL A E +LS+D + Sbjct: 171 FIPTGHDSFWQGITAAKRAAAISRTE-------QEKTSRIHVLLNASKEGLLSIDSLRYI 223 Query: 103 DMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEIT 162 M N ++ ++ + + + L E NE + Sbjct: 224 RMVNHSARKILHIS-ESITGMKVMD-APFPREFKKLLLEDTACTNEIFKYGDMMLNVTKY 281 Query: 163 PVYLQDENDQHVLTGA-VVMLRS-TIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQA 220 PV +Q+ N V++ + + + R++ + + F IV SP ++ ++ A Sbjct: 282 PVMVQNSNMGIVVSFQNISDIMDLENDIRRKIHSKGHVAKAHFDDIVGESPAIRSTIQTA 341 Query: 221 QKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA- 279 QK + + +L+ G +GTGK+LFA + H S R P++A+NCA+IPE+ +ESELFG+ Sbjct: 342 QKYSRTDSNILLIGQSGTGKELFAQSIHNHSMRKDGPFVAVNCAAIPENLLESELFGYTA 401 Query: 280 -------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVD 332 GK G+FE A+ G++ LDEIGE+ + QAKLLR + + R+G D + V+ Sbjct: 402 GAFTGAQKGGKPGYFELAHNGTLFLDEIGEIPLKFQAKLLRAIQEREIMRLGSDRTISVN 461 Query: 333 VRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQ 392 +R+I AT +NL +LV++G FREDL+YRL+VL + +P L + +DI L ++ + A Sbjct: 462 IRIIAATNRNLEQLVREGEFREDLFYRLDVLRIEIPFLENRREDIPLLARGWLLKHA--- 518 Query: 393 GVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYEL---RPQDILLPDYDAAT 449 P +L+ D +L++ W GN+RQL N R G + +++L Sbjct: 519 --PGTELSDDACRLLSQAEWNGNIRQLFNICERLSVLCSGSLIAGKDVRNVLPTLPQEPG 576 Query: 450 VAVGEDAMEGSL----------DEITSRFERS-VLTQLYRNYPSTRKLAKRLGVSHTAIA 498 E SL ++ ER +L L S + A LG+S + + Sbjct: 577 SPALPLPAEPSLPPAAPFRSAEEDSPKDSERETILKALEICRYSRSRAAALLGISRSTLW 636 Query: 499 NKLREYGL 506 K++E+ L Sbjct: 637 RKMKEFNL 644 >UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=Proteobacteria RepID=C4XRA9_DESMR Length = 462 Score = 497 bits (1281), Expect = e-139, Method: Composition-based stats. Identities = 126/401 (31%), Positives = 196/401 (48%), Gaps = 28/401 (6%) Query: 125 AAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRS 184 + L ++ + ++L D V+ V Sbjct: 68 IKEYNPAVPVLIMTAYSSVETAVSALKSGAYDYLT--------KPLDLDVMRLTVERALD 119 Query: 185 TIRMGRQLQNVAAQDVSAF--SQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDL 242 +R+ R+ +N+ + +I+ SP M+ + +A A +L+TG++GTGK+L Sbjct: 120 HLRLARENENLRQKLGPGVVGPEIIGKSPAMRELFSMIAMVAPTEATVLVTGESGTGKEL 179 Query: 243 FAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE-------GKKGFFEQANGGSV 295 A A H SPRAG P +A+NCA++ E +ESELFGH ++G F A+ GS+ Sbjct: 180 VAKALHAGSPRAGGPMVAVNCAALNETLLESELFGHEKGAFTGAERRREGRFMAADKGSI 239 Query: 296 LLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFRED 355 LDEIGE++P +QAKLLR + + +RVG D V VDVR++ AT ++L + V+ G FRED Sbjct: 240 FLDEIGEIAPSIQAKLLRVIQEREIQRVGGDRPVGVDVRILAATNRDLKKEVEAGRFRED 299 Query: 356 LYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGN 415 LYYRLNV+ +++PPLR+ QDI L + F+ RFA++ L R WPGN Sbjct: 300 LYYRLNVVAISVPPLRERGQDIPLLAQHFLTRFAEKNRKRIKGFTPAAMDHLLRCPWPGN 359 Query: 416 VRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDE----------IT 465 VR+L+NA+ RA+ G + +++ L A G Sbjct: 360 VRELENAVERAVILSVGEYVTERELPLSAMREAGGNGAPGGAGGGAPAPGDMAGLAGMAL 419 Query: 466 SRFERSVLTQLYR-NYPSTRKLAKRLGVSHTAIANKLREYG 505 ER V+ R + + A+ LG++ + KL++YG Sbjct: 420 DDVEREVILATLRDTGGNKSEAARVLGITRATLHKKLKKYG 460 >UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WZC4_DESRD Length = 448 Score = 497 bits (1281), Expect = e-139, Method: Composition-based stats. Identities = 120/406 (29%), Positives = 198/406 (48%), Gaps = 22/406 (5%) Query: 112 LFGQKLDRLRNHTAAQLI----NGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQ 167 + KL + + + + + + + + N+L PV Sbjct: 53 ITDLKLPDITGLDILEQVKATWPKLPVVMITAYGSISNAVQAMKLGAFNYLT--KPV--- 107 Query: 168 DENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLS 227 D ++ +L V + + ++ +D + +V S M+ + +K+A Sbjct: 108 DPDELLLLVQNVFERSQLLEENQTMRR-QLRDRYSLGNMVGKSKAMQELFNLIEKVAQYE 166 Query: 228 APLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH-------AP 280 A +L+TG+TGTGK+L A H A P++ ++CA++PE +ESELFGH A Sbjct: 167 ANVLVTGETGTGKELVARGIHYAGQEENLPFVPIDCAAVPETLLESELFGHSRGAFTGAA 226 Query: 281 EGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQ 340 E KKG E A+GG++ LDEIGE+ +Q K LRFL + R+GE VDVR+I AT Sbjct: 227 EQKKGQIELAHGGTLFLDEIGELPLALQKKFLRFLQEKEIVRLGETRRRKVDVRIIAATN 286 Query: 341 KNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLA 400 ++L + G +REDL+YRLNV+++ +PPLR+ DI PL F+A++ + G + Sbjct: 287 RDLEAEIAAGQWREDLFYRLNVISIEIPPLRERRDDIPPLVNHFLAKYNAQNGKAIQGMT 346 Query: 401 ADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGS 460 ++ V Y WPGNVR+L+N I RA+ G + + + + A D + Sbjct: 347 GEVMEVFMAYDWPGNVRELENVIERAVVLCMGDSIAMSCLPPKLQERSAPAPSTDG--VN 404 Query: 461 LDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 L E+ R L + + + A+ LG+S + K++ +GL Sbjct: 405 LMEMEKRLIVQTLEKTEQ---NQSAAARELGISRKQLRTKMKHHGL 447 >UniRef50_C3ICC4 Sigma54 specific transcriptional regulator, Fis n=4 Tax=Bacillus thuringiensis RepID=C3ICC4_BACTU Length = 693 Score = 497 bits (1281), Expect = e-139, Method: Composition-based stats. Identities = 138/501 (27%), Positives = 228/501 (45%), Gaps = 29/501 (5%) Query: 32 EIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREH-----LALSALL 86 EI + + +A D+ TV + E L +L Sbjct: 187 EIAQKQVVGKQVIITNRTPIILNQNIVGAVALFQDISTVEELIEELNRVKELKKQLELIL 246 Query: 87 EALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSH 146 ++ + + D K + NP L N Q I G ++ + Sbjct: 247 HSVKDLIALTDSKGRFIYCNPEMEGFLNS----LDNPDKVQFIFGIKKWKFCIKSQKCIP 302 Query: 147 NEHVVINGQNFLMEITPVYLQDENDQHVLT-----------GAVVMLRSTIRMGRQLQNV 195 G +++ +++P+ +++E +LT ++ + I+ + Sbjct: 303 QLLDFKLGNSYIAKLSPILVEEELCGTILTMSPFHETQSLFDQLINEKKRIKYLESELSK 362 Query: 196 AAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAG 255 + +F +I+ S + + A K+A + +LITG++GTGK+L A H+ S R Sbjct: 363 YKKLNDSFLEIIGCSDVLMETLFIANKVAKSDSTVLITGESGTGKELIAKGIHKVSLRKD 422 Query: 256 KPYLALNCASIPEDAVESELFGHAPEG-------KKGFFEQANGGSVLLDEIGEMSPRMQ 308 KP++ +NCA+IP + +ESELFGH ++G FEQAN G++ LDEIG++ +Q Sbjct: 423 KPFIRVNCAAIPPNLIESELFGHEKGAFTGALHMRRGKFEQANNGTIFLDEIGDLKLDLQ 482 Query: 309 AKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLP 368 KLLR L + RVG D + ++VRV+ AT NL ++V FREDLYYRLNV+ +++P Sbjct: 483 VKLLRVLQEKEIVRVGGDKTIKLNVRVLAATNGNLQKMVHDREFREDLYYRLNVIPIHIP 542 Query: 369 PLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALT 428 PLR+ DI L E F F D L +Y WPGN+R+L+N I RA+ Sbjct: 543 PLRERKADIQSLIEYFRGHFNTSLNKEIHSYTDDFLHALMKYNWPGNIRELQNVIERAMN 602 Query: 429 QLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEI--TSRFERSVLTQLYRNYPSTRKL 486 + L D+ + + + + + S +E+ +L + + YPS Sbjct: 603 LSENDVLEIGDLPDNINMNSQQNSIINNQIENTETVLTMSEYEKKILKHVIQFYPSFNAA 662 Query: 487 AKRLGVSHTAIANKLREYGLS 507 K LG++H +A K+R+Y L Sbjct: 663 GKALGLTHKTVAAKVRKYNLE 683 Score = 84.2 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 28/205 (13%), Positives = 75/205 (36%), Gaps = 16/205 (7%) Query: 26 IDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREH-LALSA 84 + + +I ++ + F E S + V + E+ +A+ Sbjct: 68 LSIASFKIKKGDKVIIQFEEEVSMSIIEEIKNYLEEEKVNYIEQNQTDHLLLENFIAIEG 127 Query: 85 LLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQD 144 + L ++ V+ ++ + N +L G +++L N A +I L++ ++ Sbjct: 128 IFSRLSHGLVVVNKENLITYVNNEGEKLLGMSVEKLLNQRADLVIPHSRLHHVLQTGKEE 187 Query: 145 SHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAA-QDVSAF 203 + V + Q + TP+ L + GAV + + + ++ + +++ Sbjct: 188 IAQKQV-VGKQVIITNRTPIILN-----QNIVGAVALFQDISTVEELIEELNRVKELKKQ 241 Query: 204 SQIVAVSPKMKHVVEQAQKLAMLSA 228 +++ S V + A+ + Sbjct: 242 LELILHS-----VKDLI---ALTDS 258 >UniRef50_Q24N84 Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense Y51 RepID=Q24N84_DESHY Length = 650 Score = 497 bits (1281), Expect = e-139, Method: Composition-based stats. Identities = 147/495 (29%), Positives = 240/495 (48%), Gaps = 34/495 (6%) Query: 36 IGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLS 95 G + + L + +L I G+ + ++ A LE E +L Sbjct: 167 EGTLTITSPNLRSHNSQTLGLAISMAMGIQKQFQIAL-----QNEIFDAALENTEEIMLF 221 Query: 96 VDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEP---QDSHNEHVVI 152 D K+ N + ++ L ++ F + + + Sbjct: 222 SDDDGKIIRTNMNALKIIELFGRDLIGSQVEDVLGEQPFFKSVAETGNTLSHIDFQLKYT 281 Query: 153 NGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQN-VAAQDVSAFSQIVAVSP 211 + FL I P+ +D+ ++G +V+L+ T + + ++ AA F I+ SP Sbjct: 282 KKKLFLTSIKPIKSKDK-----ISGYIVLLKETDHIKKAAKSPYAAMVKFTFDTIIGSSP 336 Query: 212 KMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAV 271 + + A+K A ++ +LI G++GTGKD++A A H R PY+A+NCA+IP++ + Sbjct: 337 QSMKLKSMAKKFAHFNSNILIQGESGTGKDVYAQAIHFE-NRPNGPYIAVNCAAIPQNLI 395 Query: 272 ESELFGHAPE--------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRV 323 SELFG+ GK G E ANGG++ LDEIG+M +QA LLR L D V Sbjct: 396 ASELFGYEGGAFTGAERQGKPGKIELANGGTLFLDEIGDMPLELQAVLLRVLEDKMIMHV 455 Query: 324 GEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTEL 383 G + VD R+I AT KNL++LV+ FREDLYYR++V L++PPLR+ DI+ L E Sbjct: 456 GGSRYIPVDFRLITATNKNLLDLVKNNQFREDLYYRISVFKLSVPPLRERGSDIVQLIEH 515 Query: 384 FVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDIL-- 441 F+ ++ QG+ P L+ +L +Y WPGNVRQL+N I A+ + +RP+++ Sbjct: 516 FIRIYSSNQGIDEPILSNSAKYLLLQYNWPGNVRQLQNTISYAVCMSNEGIIRPENLPEE 575 Query: 442 -LPDYDAATVAVGEDAMEGSLDEI-------TSRFERSVL-TQLYRNYPSTRKLAKRLGV 492 L + + + + E S +EI E+ + L+ + R AK LG+ Sbjct: 576 ILSYQPPSGLTLAQPEPEPSPNEIILDNTPSMKEIEKKAIMKALHESNNHIRGAAKILGL 635 Query: 493 SHTAIANKLREYGLS 507 S + + K++EY +S Sbjct: 636 SKSTLYRKIKEYEIS 650 >UniRef50_C0ZHT6 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZHT6_BREBN Length = 593 Score = 497 bits (1280), Expect = e-139, Method: Composition-based stats. Identities = 138/482 (28%), Positives = 238/482 (49%), Gaps = 30/482 (6%) Query: 48 FESFSSLMAEIRRIAGVTDVRTVP-WMPSEREH--LALSALLEALPEPVLSVDMKSKVDM 104 F +++ ++++A + ++ ++ E+ H L +++ + + V VD +++ Sbjct: 120 FADVDAILTYLQKMAELIAIKLKEHYLYVEQLHTVEKLRVVMDEMDKAVFLVDQDNRIIQ 179 Query: 105 ANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPV 164 AN + Q D A+ I+ +S P+ V + FL I P+ Sbjct: 180 ANQRARQYLQLDHDD---SQTAEWIDAIRLADAAQSAPKQV-VLSVGQEDKTFLFAIKPI 235 Query: 165 YLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLA 224 L + V+T + ++ +++ RQ+ + D F I SP + E A+++A Sbjct: 236 LLAGTVKEWVIT--LDDVQEVVQIARQVSGYSEPD--PFRMIGGNSPAIVQAKEVARRVA 291 Query: 225 MLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA----- 279 + +L+ G++GTGK+LFA A HQASPR +P+L++NCA+IPE +ESELFG+ Sbjct: 292 ASDSTVLLQGESGTGKELFAKAIHQASPRRDEPFLSINCAAIPEHLMESELFGYEEGSFT 351 Query: 280 ---PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGED-HEVHVDVRV 335 GK G FE A G++ LDEIG+MS +Q+KLLR L + R+G + + + R+ Sbjct: 352 GARKGGKPGLFEVAGKGTLFLDEIGDMSMHLQSKLLRVLQEKELYRIGGNGKPIRLAARI 411 Query: 336 ICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVP 395 I AT +L E V G+FR DLYYRL+V+ ++LP LR+ +DI+PL + A+ G Sbjct: 412 IAATHLDLQERVDAGLFRLDLYYRLHVIPIHLPSLRERREDILPLANDILLAHANRVGKG 471 Query: 396 RPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPD-YDAATVAVGE 454 + + +L + W GNVR+L+N I A+ ++P + + + Sbjct: 472 LHGFSKETQNILFHHDWRGNVRELENVIEYAVNMEATSWVQPASLPIRTGRLRESSPHSV 531 Query: 455 DAMEGSLD-----EITSRFERSVLTQLYRN----YPSTRKLAKRLGVSHTAIANKLREYG 505 + +G D + ER+ + + + A LG+S + KLREYG Sbjct: 532 EESQGPFDWQKQGLLLKELERAAIDTAMQQIRDRNGRKEEAAALLGISRATLFRKLREYG 591 Query: 506 LS 507 ++ Sbjct: 592 IT 593 >UniRef50_A9VKT7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=19 Tax=Bacillus RepID=A9VKT7_BACWK Length = 709 Score = 497 bits (1280), Expect = e-139, Method: Composition-based stats. Identities = 131/505 (25%), Positives = 246/505 (48%), Gaps = 31/505 (6%) Query: 28 LRGIEIDPIGRIYLNFAELEF--ESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSAL 85 L ++I + ++++ + +S ++ ++ + V D+ + + + L A+ Sbjct: 192 LNQLQITNEMGVLVDYSPIPNFDQSIEGMVIIVQDLPMVEDMA-MEIEYIKDLNKDLHAI 250 Query: 86 LEALPEPVLSVDMKSKVDMANPASCQLF-GQKLDRLRNHTAAQLIN----GFNFLRWLES 140 L ++ + +L V+ K ++ + F G L L L + R + Sbjct: 251 LSSIYDEILVVNHKGELIRYSETVINDFWGSNLKDLLGKNLLDLEKKGLFSPSVTRLVLE 310 Query: 141 EPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGA-----VVMLRSTIRMGRQLQNV 195 + + +G+ L PV+ ++ ++ + L++ + +++ Sbjct: 311 KQKKVSVVQETKSGRKILAVGNPVFNENGELHRIIIASRDITEATRLKTELHEIKKISEQ 370 Query: 196 AAQDVSAFSQ-------IVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACH 248 +++ F ++ SPKM+ ++ QA+K+A S+ +LI+G++G GK++ A A H Sbjct: 371 YKKELDDFKNKDRFLKKLIYCSPKMEQIINQAKKIADFSSNVLISGESGVGKEVIAQAIH 430 Query: 249 QASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGFFEQANGGSVLLDEI 300 Q R+ KP+L LNC +IPE +ESELFG+ GK+G+F++A+ G + LDEI Sbjct: 431 QLGNRSSKPFLKLNCGAIPETLLESELFGYTKGAFTGADKNGKEGYFKRADQGILFLDEI 490 Query: 301 GEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRL 360 GEM +Q KLLR L + +G + ++V++I AT K+L ++V+ G FREDL+YRL Sbjct: 491 GEMPLHLQVKLLRVLQEQEVIPIGSTTPMKINVQIIAATNKSLEKMVESGTFREDLFYRL 550 Query: 361 NVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLK 420 NV+ L +P LR+ +D+ L F+ + ++ L D +L Y+WPGNVR+L+ Sbjct: 551 NVIPLRVPSLRERMEDVPVLAFHFLQQLNEKYNKNY-HLTPDALNLLEFYSWPGNVRELQ 609 Query: 421 NAIYRALTQLDGYELRPQDIL--LPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYR 478 N I R + D + + + L + L E E ++ + Sbjct: 610 NMIERLVVSADDPVIEAEFVSKFLTPGYDFNKSKPVITRVLPLQEALHSVEEQLILLAMK 669 Query: 479 NYPSTRKLAKRLGVSHTAIANKLRE 503 Y +T K AK LG+S ++++ K ++ Sbjct: 670 QYKTTTKAAKALGISQSSVSRKYQK 694 Score = 68.1 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 25/171 (14%), Positives = 63/171 (36%), Gaps = 8/171 (4%) Query: 18 LDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSER 77 LL+ + L I ++ + + E+ + G V ++ Sbjct: 62 SKLLLSNAVSLDTICHLSKDISLTALFQIIGAPIAIVKNEVDELTGYIRREDVFAELFKQ 121 Query: 78 EHLA---LSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNF 134 E+ + L +L ++P + VD + K+ N + ++ +++ N A + NG + Sbjct: 122 ENQSVDILKIILTSIPMGIFVVDREKKIVNCNESGLKMIKSTPEKVMNVPAELIFNGEHI 181 Query: 135 LRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRST 185 + + N L++ +P+ D+ + G V++++ Sbjct: 182 NNVFTKGKTILNQLQIT-NEMGVLVDYSPIPNFDQ----SIEGMVIIVQDL 227 >UniRef50_Q2SEE5 Sigma 54-dependent transcriptional activator n=2 Tax=Oceanospirillales RepID=Q2SEE5_HAHCH Length = 471 Score = 497 bits (1280), Expect = e-139, Method: Composition-based stats. Identities = 132/452 (29%), Positives = 210/452 (46%), Gaps = 28/452 (6%) Query: 80 LALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRL--RNHTAAQLINGFNFLRW 137 L LL++ E + VD K+++ + L D + I + Sbjct: 22 NPLMDLLDSFCEGSIIVDQKARIRWLSDKYRLLLELPEDAAKYVGRPVEEAIPNSMMRQV 81 Query: 138 LESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVL--------------TGAVVMLR 183 +ES + + I G ++ P+ + + LR Sbjct: 82 VESGRPILLD-LMRIRGTWMVVTRMPIRDDQDQVIGGIGFVFYKQLDYMKPLVEKFGRLR 140 Query: 184 STIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLF 243 + Q +F+ + SP ++ ++ +A++ A L +L+ G+TGTGK++ Sbjct: 141 GVPTTAEKQLADMRQAKYSFADFIGQSPVIRELIRRARQAAELDTTVLLLGETGTGKEVL 200 Query: 244 AYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGFFEQANGGSV 295 A+A H AS RA +P++ +N A+IPE +E+E FG AP G+ G + A+GG++ Sbjct: 201 AHAIHHASVRAERPFVGVNMAAIPESLLEAEFFGAAPGAYTGADRKGRIGKIQLADGGTL 260 Query: 296 LLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFRED 355 LDE+G++S +Q KLLR L + F +G + + V+VR+I AT +NL ++V+ G FR D Sbjct: 261 FLDEVGDLSLSLQTKLLRVLQEQEFEALGSNRIIRVNVRIIAATSRNLKQMVETGEFRSD 320 Query: 356 LYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGN 415 LYYRLNVL + +PPLRD D+ L + +F D +P K A+ +L Y WPGN Sbjct: 321 LYYRLNVLPIEVPPLRDREGDVELLVGNMLRQFCDASALPFRKPNAEAMQLLRTYHWPGN 380 Query: 416 VRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQ 475 VR+L N + RA +G EL D A L E + ER+ L Q Sbjct: 381 VRELHNTLERAFIFAEGTELTVADF--AHLQGAGEKGNRREAVKPLSEAMAEAERNFLKQ 438 Query: 476 LY-RNYPSTRKLAKRLGVSHTAIANKLREYGL 506 + AK LG+S KL+++ L Sbjct: 439 AMSACNGNRSASAKALGISRATFYEKLQKHEL 470 >UniRef50_Q3A356 Two component, sigma54 specific, transcriptional regulator, Fis family n=11 Tax=Desulfuromonadales RepID=Q3A356_PELCD Length = 471 Score = 496 bits (1279), Expect = e-139, Method: Composition-based stats. Identities = 118/423 (27%), Positives = 191/423 (45%), Gaps = 23/423 (5%) Query: 107 PASCQLFGQKLDRLRNHTAAQL-INGFNFLRWLESEPQDSHNEHVVINGQ-----NFLME 160 + ++ + + ++G L+ ++ + ++ + G + E Sbjct: 49 EKALEILSKTPFEVILTDLFLPGVSGIEILKRVKEQWPFTNVILITGKGSAESAVEAMKE 108 Query: 161 ITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQ--DVSAFSQIVAVSPKMKHVVE 218 Y+ L + R+ + + Q F I+ S M++V Sbjct: 109 GAFDYITKPLHFEKLQVIIAKAVEKSRLVAENLYLRQQLRGKYRFDNIIGNSLPMQYVFS 168 Query: 219 QAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH 278 + +K+ + +LI G++GTGK+L A A H R KP++A+NC +IP + +ESELFGH Sbjct: 169 RMEKVLNTDSTILILGESGTGKELVAKAIHYNGHRREKPFVAINCGAIPAELLESELFGH 228 Query: 279 APE-------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHV 331 K G F+QA+ G++ LDEIG M +Q KLLR L + +VG ++ + Sbjct: 229 VRGAFTGAVADKTGKFQQAHQGTIFLDEIGTMPLHLQMKLLRVLQEQEVEKVGSSKKIKL 288 Query: 332 DVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADE 391 DVRVI AT NL E V++G FR DLYYRLNV+ + LPPLR+ +DI L F+ + E Sbjct: 289 DVRVISATNCNLEEEVEQGRFRADLYYRLNVIPIALPPLRERREDIALLARYFLQKTCTE 348 Query: 392 QGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILL-------PD 444 P + L Y WPGNVR+L+N I R +T D + D+ D Sbjct: 349 MNQPLISITPGAMNCLENYHWPGNVRELENVIERTVTLTDSIAIGKSDLPANISGSCCED 408 Query: 445 YDAATVAVGEDAMEGSLDEITSRFERSVLTQLYR-NYPSTRKLAKRLGVSHTAIANKLRE 503 D + E+ + ER ++ + + A L + T + K++ Sbjct: 409 EDPQISCPRLTESGMDMPEVIAGIERCLIKSAMGLSGGVKARAASLLNIKRTTLVEKIKR 468 Query: 504 YGL 506 G+ Sbjct: 469 LGI 471 >UniRef50_C6PY17 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PY17_9CLOT Length = 643 Score = 496 bits (1279), Expect = e-139, Method: Composition-based stats. Identities = 127/480 (26%), Positives = 234/480 (48%), Gaps = 33/480 (6%) Query: 46 LEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMA 105 + + ++A I + V+ + + + + L ++P +++ DM K+ + Sbjct: 182 VHSHTLGMVIAASNAIEEMLRVKEYNKIQN-INNKHIKNLFNSIPVAIITSDMNGKIKVC 240 Query: 106 NPASCQLFGQKL-DRLRNHTAAQLINGFNFLR---WLESEPQDSHNEHVVINGQNFLMEI 161 N + +FG ++L+ + +L+ ++ +R +L N + N + + Sbjct: 241 NNKALDMFGSNSINKLKAYEMNELVENWDEIRNAIYLGESFSREVNIRTLRNNFRCNLMV 300 Query: 162 TPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQ 221 + +Y +E+D V + ++ R+ Q F +++ VVE A+ Sbjct: 301 SSIYNCEEDD----IEVVYVFEEVKKIKRKNH---GQAYYTFDKVIGQDENFIKVVEYAK 353 Query: 222 KLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA-- 279 K++ + +LI G++GTGK++FA + H S R P++ALNC +IP+ +ESELFG+ Sbjct: 354 KISDSKSTILIMGESGTGKEVFAQSIHNYSSRVDGPFIALNCGAIPKQLIESELFGYEEG 413 Query: 280 ------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDV 333 G +G FE A+GG+++LDEIGEM MQ KLLR + +G ++G + VDV Sbjct: 414 AFTGAKKGGNRGKFELADGGTIMLDEIGEMPLDMQTKLLRVVQEGVITKIGSSKSIPVDV 473 Query: 334 RVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQG 393 R+I AT ++L + V+ G FR+DLYYRLNVL L LPPLR+ DI + + + Sbjct: 474 RIIAATNRDLKKEVELGRFRKDLYYRLNVLPLFLPPLRERKGDIPLIIRYLIKNISKRLE 533 Query: 394 VPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAAT--VA 451 P ++ + + Y WPGN+R+L+N + + + I + Sbjct: 534 KKEPSISEEWLKEINSYDWPGNIRELENVVE--------LIINTESIPSGYFQNGNCYNE 585 Query: 452 VGEDAMEGSLDEITSRFERSVLTQLYRNY-PSTRKLAKRLGVSHTAIANKLREYGLSQKK 510 V + E SL E+ L ++ + + + + A+ LG+ + +K+++Y + K+ Sbjct: 586 VLINISEDSLK--LDFAEKEHLVKVLKKFKGNITRSAEALGIRRNTLYSKIKKYNIEIKQ 643 >UniRef50_Q183V3 Putative sigma-54 dependent regulatory protein n=8 Tax=Bacteria RepID=Q183V3_CLOD6 Length = 638 Score = 496 bits (1279), Expect = e-139, Method: Composition-based stats. Identities = 125/510 (24%), Positives = 238/510 (46%), Gaps = 36/510 (7%) Query: 15 RELLDLLVLRGIDLRGIE-----IDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRT 69 + ++ +GI+ + I E E+ + + +I T Sbjct: 139 YDAIEKYRKKGINTYIGDTTVAHIVKRLNCKGILIESREENILRAIQQAEQILEATK--- 195 Query: 70 VPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLI 129 ++ L + A+ + + + +++VD K+ + N ++ ++FG K + H +I Sbjct: 196 ----DEQKRRLQIEAMTDFVHDGIITVDKNFKITLFNKSAEKIFGIKKENALYHNVVDVI 251 Query: 130 NGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRM- 188 + +E+ E I + P+ + + + GAV + + + Sbjct: 252 PNTVLPQVVETMEPQI-GEIQNIGSTKIITNRVPIIVDGQ-----IQGAVSTFQDSKEIS 305 Query: 189 ------GRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDL 242 R L + F I+ S K K +E A+K A P++ITG++G GK+L Sbjct: 306 SFEHTIRRSLLSKGLSAKYTFDDIIHASKKTKDCIELAKKYACYDTPMIITGESGVGKEL 365 Query: 243 FAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGS 294 F + H S R P++A+NCA+IP +ESE FG+ +GK G FE A+ G+ Sbjct: 366 FCQSIHNYSKRKNAPFVAVNCAAIPPSLIESEFFGYEEGSFTGARKKGKAGVFELAHEGT 425 Query: 295 VLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFRE 354 + LDEI E+ +Q +LLR L + R+G D + +DV++ICA+ K+L +++ G+FR+ Sbjct: 426 IFLDEISEIPLELQGRLLRVLQEKQVMRIGGDKVIPIDVKIICASNKDLKNMMRNGLFRQ 485 Query: 355 DLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPG 414 DLY+R+N+LTL LP L++ +DI+ L+E F+ +++ + + ++ L + G Sbjct: 486 DLYFRINILTLYLPSLKERKEDIIKLSEFFIHKYSSKYNKTPLIITPNIKKALLEREYEG 545 Query: 415 NVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLT 474 N+R+L+ + RA+ + + + + D +LD E+ + Sbjct: 546 NIRELEGMMERAVIVESFDSILLEKLSNEYTNNIVDKDNSDFECSNLD--LKTLEKKYIY 603 Query: 475 QLY-RNYPSTRKLAKRLGVSHTAIANKLRE 503 ++Y N +T K + L ++ + + KL+E Sbjct: 604 KIYNENNRNTTKTCEILKITRSTLWRKLKE 633 >UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulator n=3 Tax=Myxococcus RepID=Q1D4K8_MYXXD Length = 471 Score = 496 bits (1278), Expect = e-139, Method: Composition-based stats. Identities = 140/406 (34%), Positives = 212/406 (52%), Gaps = 21/406 (5%) Query: 112 LFGQKLDRLRN----HTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQ 167 L ++ ++ TA + + F+ ++ E + NFL+ P+ Sbjct: 52 LTDVRMPQMDGLTLLKTAREQGSDATFVMMTAFASVETAVEAMKSGADNFLL--KPL--- 106 Query: 168 DENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLS 227 D + V G V+ RS + L++ V F I+ SP+++ + + ++ A Sbjct: 107 DADQVLVTLGKVLEKRSLRQEAEALRDQVRSRVRRFHDIIGESPQLQGIYDVIRRAAGTR 166 Query: 228 APLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE------ 281 A +LI G++GTGK+L A A HQ SPR KP++ ++CA++ E+ +ESELFGH Sbjct: 167 ATVLILGESGTGKELIAQALHQESPRKDKPFIRVHCAALSENLLESELFGHEKGSFTGAL 226 Query: 282 -GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQ 340 K+G FE A+GG++ LDEIGE+SP +Q KLLR L F RVG + VDVR++ AT Sbjct: 227 ARKEGRFELADGGTLFLDEIGEISPAVQVKLLRVLQQREFERVGGTQTLKVDVRIVAATH 286 Query: 341 KNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLA 400 ++LV V+ G FREDLYYRLNV+++ LPPLRD D+ L F+ +++D G LA Sbjct: 287 RDLVAEVKAGRFREDLYYRLNVVSVTLPPLRDRKSDVPALVNHFLEKYSDSYGKQVRGLA 346 Query: 401 ADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAAT--VAVGEDAME 458 L + WPGN+R+L+NAI RA+ G EL D+ + G Sbjct: 347 PGTLQALLSHDWPGNIRELENAIERAVVLAQGQELSTDDLPPVLRGPRPHGTSTGALIPG 406 Query: 459 GSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREY 504 +L I ++L L ST + A+ LG+S I +L+EY Sbjct: 407 ATLAAIERE---AILRTLEMVQGSTSRAAEVLGISVRKIQYRLKEY 449 >UniRef50_UPI0001BC60A6 putative PAS/PAC sensor protein n=1 Tax=Fusobacterium ulcerans ATCC 49185 RepID=UPI0001BC60A6 Length = 504 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 116/496 (23%), Positives = 225/496 (45%), Gaps = 38/496 (7%) Query: 48 FESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANP 107 + F M + + + D + + + + L + + + + K N Sbjct: 15 EKVFLKAMEKDKTVKEKYDFIYKEYQEFLNNYFDFKEIADNLFDGIYISNGEGKTLFINE 74 Query: 108 ASCQLFGQKLDRLRNHTAAQLI------NGFNFLRWLESEPQDSHNEHVVINGQNFLMEI 161 A ++ G + + ++ G L ++ + + ++ +V ++ L+ Sbjct: 75 AYTRITGITKEEIIGKNVRDILAKGDIYKGAVTLDVIKEKKRINNIGKIVKLDKDVLVTG 134 Query: 162 TPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAF----------------SQ 205 +P++ + N + V+ R + + ++ + Sbjct: 135 SPIFDKYGN----VELVVINNRDISELKDLENKIEKLKKTSLKVDEEIKFLRSRQMSNRK 190 Query: 206 IVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCAS 265 ++ S KM + +A +LITG++GTGK+L A S R KP++ +NCA+ Sbjct: 191 LIYKSEKMNSIFTLINTIAPTDVTVLITGESGTGKELVADEIFYKSFRKDKPFIKVNCAA 250 Query: 266 IPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLND 317 IP + +E+ELFG+ GK G FE AN G++LLDEIG+M ++Q KLLR L Sbjct: 251 IPSELLEAELFGYEGGAFTDSKKNGKIGMFELANEGTILLDEIGDMPIKLQTKLLRVLQQ 310 Query: 318 GTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDI 377 ++G + +++R+I +T +NL E ++ G FREDL+YRLNV+ +++ PLR +DI Sbjct: 311 KEIMKLGGTQPIKLNIRIIASTNQNLKEQIKNGKFREDLFYRLNVVPIDIEPLRKRKEDI 370 Query: 378 MPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRP 437 L F+ F + + + +L +Y WPGN+R+L+N + R + + Sbjct: 371 PELIFEFLNIFNKKYNKNTK-IDKEAIELLVKYKWPGNIRELENFLERMVVINTTGIITV 429 Query: 438 QDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAI 497 +++ + + + L + S E+ ++++ +N+ STRK AK LG+ + + Sbjct: 430 REVAP---MIDSDDFFMEVSDYDLKKAVSYLEKRMISKALKNFGSTRKAAKHLGIDQSTV 486 Query: 498 ANKLREYGLSQKKNEE 513 K + + K +E Sbjct: 487 VKKCKSLEIDILKLKE 502 >UniRef50_C5JBC1 Sensory box protein/sigma-54 dependent DNA-binding response regulator n=1 Tax=uncultured bacterium RepID=C5JBC1_9BACT Length = 584 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 134/531 (25%), Positives = 238/531 (44%), Gaps = 65/531 (12%) Query: 32 EIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREH------------ 79 E P +I L L+ +S S + AG D P +P + H Sbjct: 70 EYFPEVKIILIADSLDAKSVQSALR-----AGSFDYLAKPVLPLKLAHVINLALEHSRVQ 124 Query: 80 -------LALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRL-------RNHTA 125 + A+ + + + ++++D + ++ N A+C+L + + Sbjct: 125 NEKKMLVNRMEAVFQGVDDAIVAMDNEWRIIQINDAACKLLKLNHSSMNQSFQNEISWLF 184 Query: 126 AQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRST 185 ++ + + + NG ++ T D G ++++R Sbjct: 185 HKVEPLLRQAQEEWLGKRAVCMISMHENGMERILNCTASLFHDPIQNAQ--GIILVVRDE 242 Query: 186 IRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAY 245 R+ + + + +V S M+ V E ++LA + + +LITG+TGTGK+L A Sbjct: 243 SRLAMLERETQTRQ--GWHGLVGSSLPMQEVYELIERLAEVDSTVLITGETGTGKELVAR 300 Query: 246 ACHQASPRAGKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLD 298 A H SPR+ ++A+NCA++P +ESELFGH A K G F+ A+GG++ LD Sbjct: 301 ALHAISPRSQHSFVAVNCAALPVGLMESELFGHVRGAFTNAVRDKPGRFKMADGGTIFLD 360 Query: 299 EIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYY 358 EIG++ MQ +LLR L + TF VG+++ + V+VRV+ AT +NL E VQ+G+FREDLYY Sbjct: 361 EIGDLPLDMQVRLLRVLQEQTFEAVGDNNPIQVNVRVVAATHRNLRERVQEGLFREDLYY 420 Query: 359 RLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQ 418 RL V+ + LP LR+ D+ L + F+ +F + ++ T + + WPGNVR+ Sbjct: 421 RLKVVEMRLPSLREHKTDLPMLIDHFLKKFNARMKRSIKGITDEVLTAIMEHDWPGNVRE 480 Query: 419 LKNAIYRALTQLDGYELRPQDIL----------------LPDYDAATVAVGEDAMEGSLD 462 L++ + A+ L ++ + G + G Sbjct: 481 LEHTLEHAMVVAPQSILAWSNLPHDFRNRYFPVMKLLQQPSHQRGRPLKNGHPSGRGPDR 540 Query: 463 EITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKKNEE 513 E +L L + + A RL +S + + +++ GL+ + ++ Sbjct: 541 ET-------ILQTLEDSRWQLQIAATRLQISRSTLWRRMKSMGLNNPEKKQ 584 >UniRef50_Q39TT6 Transcriptional regulator, Fis family / DNA-binding protein Fis n=1 Tax=Geobacter metallireducens GS-15 RepID=Q39TT6_GEOMG Length = 473 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 126/451 (27%), Positives = 204/451 (45%), Gaps = 39/451 (8%) Query: 92 PVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRW------LESEPQDS 145 P++ VD ++ N A+C+ FG D TA + G W L+ + Sbjct: 25 PIVWVDSTTRFARVNDAACRCFGYSPDEFIRLTAQDIAPGIPTELWPQHWAELKRMQFRT 84 Query: 146 HNEH-----------------VVINGQNFLMEITPVYLQDENDQHVLTGA---VVMLRST 185 ++H + G+ + Q Q L A V L++ Sbjct: 85 FSDHFRKRSGEKFPVEVEENFIRFEGREYSCSFIKDMTQHFQTQEALRRALDEVQTLKNR 144 Query: 186 IRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAY 245 + + + F +IV +P ++ +++A A +LI G+TG GK+L A Sbjct: 145 LEAENVYLMNEIKLSNNFDEIVTGNPIFMKALQLVEQVAPTDASVLILGETGVGKELIAR 204 Query: 246 ACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE-------GKKGFFEQANGGSVLLD 298 A H S R +P + LNCA++P +E+ELFGH K G F+ A+GG++ LD Sbjct: 205 AIHNLSNRRDRPLIRLNCAALPATLMENELFGHERGAFTGANCRKPGRFDLADGGTLFLD 264 Query: 299 EIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYY 358 E+G++ +Q+KLLR L +G F R+G + VDVR++ AT +L L+ +G FR DLYY Sbjct: 265 EVGDLPMELQSKLLRVLQEGEFERLGGAETIKVDVRILAATHVDLKALLAEGRFRSDLYY 324 Query: 359 RLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQ 418 RLNV + PPLR+ +DI L FV ++ G + + L Y WPGN+R+ Sbjct: 325 RLNVFPIQCPPLRERREDIPLLVRHFVKASCEKNGKSIELIPRHVMESLEGYPWPGNIRE 384 Query: 419 LKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYR 478 L+N I RA+ G +L + V + A L+ L Sbjct: 385 LQNVIERAVIISRGNKLEIDSLP------KMVIAADAAPISPLEVTEREHIIRALETTAW 438 Query: 479 NYPSTRKLAKRLGVSHTAIANKLREYGLSQK 509 + A+ LG+ T + ++R+ G++++ Sbjct: 439 RVGGPKGAAEILGLKRTTLQARMRKLGINRQ 469 >UniRef50_A4IJQ7 Sigma-54-dependent transcriptional activator n=5 Tax=Geobacillus RepID=A4IJQ7_GEOTN Length = 689 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 127/474 (26%), Positives = 218/474 (45%), Gaps = 25/474 (5%) Query: 58 IRRIAGVTDVRTVPWMPSEREH-----LALSALLEALPEPVLSVDMKSKVDMANPASCQL 112 + + D+ + ++ E E L +++A + + +D + N L Sbjct: 214 VGAVGVFQDISEIEFISHELETVKQIVNELQTVMDAASDGIAIIDRHGGIVRQNEKWAAL 273 Query: 113 FGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQ 172 F + +++ + +S S G ++ P+ ++ E Sbjct: 274 FPSMEHQRVPAPLERVVR-----QAFDSCQSCSMLHQGAETGNTLIVSAVPI-IEKEGQA 327 Query: 173 HVLTGAVVMLRSTIRMG---RQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAP 229 L V + ++ + + + ++ +P M H+V A++ A + Sbjct: 328 ERLVLYVKDMTEMEQLRVELEETKRLLHTLSQKEDGLIYRAPAMAHMVNIAKQAAAVDVT 387 Query: 230 LLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA--------PE 281 +L+TG++GTGK+ A + S R+ +P++ +NC +IPE +ESELFG+ + Sbjct: 388 VLLTGESGTGKEELANFIWRQSARSNRPFVKVNCGAIPETLMESELFGYEAGAFTGAVKK 447 Query: 282 GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQK 341 GKKG+FEQA+GG++ LDEI E+ R+Q KLLR L R+G + +DVRVI AT K Sbjct: 448 GKKGYFEQADGGTIFLDEISEIPLRLQVKLLRVLQSMEIVRLGAEAPKQIDVRVIAATNK 507 Query: 342 NLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAA 401 L ELV G FR DL+YRLNV+ + +PPLRD +DI L + + RFA++ P Sbjct: 508 PLEELVTAGRFRADLFYRLNVMPIVIPPLRDRKEDIPLLVDHYRKRFAEKYQKPLV-FTD 566 Query: 402 DLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDI--LLPDYDAATVAVGEDAMEG 459 + Y WPGNVR+L NA+ R + + L + T++ Sbjct: 567 RALEAMMDYHWPGNVRELVNAVERMFVTATSSIVDEDQVAKWLHLEPSPTISPVAIGEII 626 Query: 460 SLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKKNEE 513 L + + ER ++ + + R+ AK LGV + + K ++Y + E+ Sbjct: 627 PLKQAVAEVERQLMIKALNKARTYRQAAKLLGVDASTLVRKAQKYKIKSLGGED 680 Score = 80.8 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 20/160 (12%), Positives = 56/160 (35%), Gaps = 12/160 (7%) Query: 35 PIGRIYLNFAELEFES--FSSLMAEIRRIAGVT---DVRTVPWMPSEREHLALSALLEAL 89 P I+ ++F ++ E R+ GV + + A+ A Sbjct: 75 PPLSIHDCIENIKFGDGSLRPVVDENGRLVGVLTKGQYLEAYAKAVQLRLKHMDAIFNAA 134 Query: 90 PEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEH 149 ++S+D + ++ NP + ++ + ++ L + + + H E Sbjct: 135 HNGIISIDAEGRITSINPPAEKMARTTKEEAIGRFLTDVVIPSGLLDVVRTG--EGHTEK 192 Query: 150 VVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMG 189 + + ++ +P+ + + + GAV + + + Sbjct: 193 YRVGKRIYITNRSPIIDEGQ-----VVGAVGVFQDISEIE 227 >UniRef50_C6JPX9 PAS modulated sigma54 specific transcriptional regulator n=1 Tax=Fusobacterium varium ATCC 27725 RepID=C6JPX9_FUSVA Length = 467 Score = 495 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 124/460 (26%), Positives = 219/460 (47%), Gaps = 33/460 (7%) Query: 80 LALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLE 139 L LEA+P V+ +D+ + N L G + + + + +E Sbjct: 8 NLLHYALEAMPNCVI-IDLDLNIVYMNKVYTDLIGATQEEVIGKNVKKYLPNTLLDEIIE 66 Query: 140 SEPQDSHNEHVVIN---GQNF--LMEITPVYLQDENDQHVLTGA-------------VVM 181 + + + + N G+ F + P+Y ++ + + Sbjct: 67 TGKERIGDIFLAKNLKTGKTFSLITNKFPIYENNKIIGALGMSIPHSSSYGVDTKDEIEN 126 Query: 182 LRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKD 241 L ++ +Q + + + QI+ S M + +K A P+LITG+TGTGK+ Sbjct: 127 LIHKAKLYKQYLDNKKNPMYSLDQIIGKSNAMMQIKATIEKYADTDIPVLITGETGTGKE 186 Query: 242 LFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGFFEQANGG 293 + A A HQ R + ++ +NCA+IP++ +ESELFG+ P GK G F+ A+ G Sbjct: 187 VIANAFHQLCRRYNENFVKINCAAIPKELLESELFGYEPGAFSGALKNGKIGKFQLADNG 246 Query: 294 SVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFR 353 ++LLDEIGEM +Q+KLLR L + ++G + + R+I T KN++ LV + FR Sbjct: 247 TILLDEIGEMPLILQSKLLRILQEKEIEKIGGLKPIKISTRIIGCTNKNMIALVNENKFR 306 Query: 354 EDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWP 413 +DLYYR+N L + +PPLR+ +DI L + F + DE G +++ ++ Y+WP Sbjct: 307 KDLYYRMNALEIKIPPLRERVEDIPLLCDFFRKKINDEYGYAISEISKEVIEKFMDYSWP 366 Query: 414 GNVRQLKNAIYRALTQLDGYELRPQDI-----LLPDYDAATVAVGEDAMEGSLDEITSRF 468 GN+R+L++ +YRA L D L + D ++ + E SL ++T Sbjct: 367 GNIRELQHVMYRASILAHYGTLTLNDFDFFLENLQNSDLEKISFDSFSEETSLKKLTMSN 426 Query: 469 ER-SVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 E+ +++ L + K AK L + + + K+++ + Sbjct: 427 EKNAIIEALKITKGNKSKAAKLLKIDRSRLYAKMKKLDIE 466 >UniRef50_C0GJ16 GAF modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJ16_9FIRM Length = 622 Score = 495 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 123/429 (28%), Positives = 203/429 (47%), Gaps = 34/429 (7%) Query: 87 EALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSH 146 E + + +++D + + N +L G+K + L H AA + + + + Sbjct: 219 EMMRDGFIAIDSRGIITEINREGAKLLGRKREELVGHLAADVFDNRRWS---FNGKSLYM 275 Query: 147 NEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQI 206 N + L+++T ++Q GA+ +L R R + + Sbjct: 276 QSSESDNLTSRLVKVT-------DEQGAPMGAIGVLSPAPREERSQETMW---------- 318 Query: 207 VAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASI 266 V S + V +A K A S+ +LI G++GTGK++ A HQ SPR KP++A+NCA+I Sbjct: 319 VGRSQATQSVFSRADKAAQTSSTVLIQGESGTGKEIVARYLHQQSPRHNKPFVAINCAAI 378 Query: 267 PEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDG 318 P +ESELFG+A G G FE A GG+V LDEIG+M +QA LLR L + Sbjct: 379 PATLIESELFGYADGAFTGAKKGGAPGKFEVAQGGTVFLDEIGDMPSNVQASLLRVLQER 438 Query: 319 TFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIM 378 R+G+ VDVRV+ AT ++L +++G FR DLYYRL V+T+++PPL DI Sbjct: 439 EVVRIGDSRPRPVDVRVVAATNRDLSTRIEQGDFRLDLYYRLKVVTIDVPPLSRRLDDIY 498 Query: 379 PLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQ 438 L FV + G + ++ L Y WPGN+R+L+N + + + L Sbjct: 499 DLVPYFVKKICRASGREPMGVTDEVYEALLNYHWPGNIRELENCMESMVAMAEHSYLTTD 558 Query: 439 DILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIA 498 D+ + + + + + +++++ L A+ LG+ T + Sbjct: 559 DLPAEIAKNVSAVSCGETL------LEQQTKKAIMQALAETNGKIAPAARLLGIGRTTLY 612 Query: 499 NKLREYGLS 507 K+ E G+ Sbjct: 613 RKIEELGIK 621 >UniRef50_C1MAF5 Signal-transduction and transcriptional-control protein n=5 Tax=Enterobacteriaceae RepID=C1MAF5_9ENTR Length = 582 Score = 495 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 135/500 (27%), Positives = 232/500 (46%), Gaps = 31/500 (6%) Query: 21 LVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHL 80 L R I + GI + ++++ F + + +I + + + ++ Sbjct: 100 LNNRVIGVIGIICSTQAQRDTLLSQID--KFVTFIEQIAVMISSKVFECLERLRAQETLG 157 Query: 81 ALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLES 140 A L++A+ V+++D K + AN ++ ++ ++ + Sbjct: 158 AFRRLIDAMDRGVVAIDGKGLIWHANHSADRILN---REVQGLPLT--------IETTGD 206 Query: 141 EPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDV 200 + + GQ + + L +++ + +++ R L + Sbjct: 207 SLYGDEEAWLTLEGQKHHVLCKQISLSSQDNDRL---TMIIFRDAHDYLSNLTPSPYESD 263 Query: 201 SAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLA 260 ++ SP M+ + K+A A +LITG++G+GK++ A+A HQ+SPR P++ Sbjct: 264 MQVR-LIGHSPSMEQLRSTIGKIANSYASVLITGESGSGKEVVAFAIHQSSPRKAAPFVT 322 Query: 261 LNCASIPEDAVESELFGHAPE--------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLL 312 +NCA+IPE +ESELFG+ G+ G FE ANGGS+ LDEIG+M +QAKLL Sbjct: 323 INCAAIPEQLLESELFGYVRGAFSGADPKGRMGKFELANGGSLFLDEIGDMPLHLQAKLL 382 Query: 313 RFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRD 372 R L + RVG ++ +++DVR+I AT KN+ +V+ FREDL+YRLNV+ L LP LR+ Sbjct: 383 RVLQEKAITRVGSNNTINIDVRIIAATNKNINAMVENNQFREDLFYRLNVVPLVLPSLRE 442 Query: 373 CPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQ-LD 431 DI L + F F+ P KL D+ L + WPGN+R+L+N I + Sbjct: 443 RRADIAVLAQYFADEFSVSYQRPPQKLPDDVINRLYAWHWPGNIRELRNVIEYIFVMRGE 502 Query: 432 GYELRPQDILLPDYDAAT-VAVGEDAMEGSLDEITSRFERSVLTQLYRNYPS----TRKL 486 + + AA A L + ER + + + + S ++ Sbjct: 503 AAGINASHLPPYLLTAADGRKTTMTAQPRQLASKGKQAEREAIENVIQRFGSSVEGKKQA 562 Query: 487 AKRLGVSHTAIANKLREYGL 506 A LG+S + K++ YGL Sbjct: 563 ATELGISIATLYRKIKLYGL 582 >UniRef50_C0D6Q8 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D6Q8_9CLOT Length = 476 Score = 495 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 128/450 (28%), Positives = 218/450 (48%), Gaps = 15/450 (3%) Query: 68 RTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQ 127 R +P L++++ + VL D + + N A + +G + +++ + + Sbjct: 7 RNSAIIPWNLHPSEFQRLIDSMYDEVLIYDNQYTIVYINDACSRHYGYQPEQMIGKSFFE 66 Query: 128 LING----FNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLR 183 ++G + L + + + + G L P++ +N +V+ L Sbjct: 67 FVDGNCWDISVLPVIYEKKKTYAVKQKTKLGSELLTIAVPIFDSQKNLAYVIMNVRDNLS 126 Query: 184 STIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLF 243 + + + S +M+ V++ A++++ + ++TG++GTGK + Sbjct: 127 GVKLFNPDYIYRKSSLSYSTVPMC-KSREMEQVIQFAERISQVDVTCILTGESGTGKTMV 185 Query: 244 AYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGFFEQANGGSV 295 A H SPR +P+++LNCASIP + VESELFG+ GKKG FE A+GG++ Sbjct: 186 ARYIHSISPRNARPFISLNCASIPNELVESELFGYIKGAFTGANTQGKKGLFEAASGGTL 245 Query: 296 LLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFRED 355 LLDEI E+S QAKLL L D F +G V VDVR+I AT KNL ++V G FRED Sbjct: 246 LLDEIAELSLSTQAKLLHVLQDHEFIPIGGSSPVKVDVRIIAATNKNLRQMVADGQFRED 305 Query: 356 LYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGN 415 L+YRLNV+ + LPPLR DI L + F+ F ++ + L + L Y W GN Sbjct: 306 LFYRLNVVEIYLPPLRKRKADIPDLIQQFLKEFNEKYNLS-RSLDSHALETLVNYEWKGN 364 Query: 416 VRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGS-LDEITSRFERSVLT 474 VR+L++ I R + + G + + + + + + FE +++ Sbjct: 365 VRELRHMIERLVVTVTGDLITTGHLPQNMTGSTDTGTAREVPKITDYHTRMQNFEEAMIR 424 Query: 475 QLYRNYPSTRKLAKRLGVSHTAIANKLREY 504 + Y+ S+RK+A L +S T +++Y Sbjct: 425 EAYQKCGSSRKMAAYLNISQTKANRLIQKY 454 >UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC n=32 Tax=Proteobacteria RepID=ATOC_ECOLI Length = 461 Score = 495 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 139/454 (30%), Positives = 216/454 (47%), Gaps = 36/454 (7%) Query: 93 VLSVDMKSKVDMANPASCQLFGQKLDRLR-NHTAAQLINGFNFLRWLESEPQDSHNEHVV 151 +L VD + V + L G + TA L + L + Sbjct: 7 ILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIKA 66 Query: 152 INGQNFLMEITPV----------------------YLQDENDQHVLTGAVVMLRSTIRMG 189 + TPV Y+ D L V M Sbjct: 67 LKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQSMK 126 Query: 190 RQLQNVAAQDVSAF--SQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYAC 247 ++++++ +++ I+ SP M + + K+A+ A +LI+G++GTGK+L A A Sbjct: 127 KEIRHLHQALSTSWQWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAI 186 Query: 248 HQASPRAGKPYLALNCASIPEDAVESELFGHAPEG-------KKGFFEQANGGSVLLDEI 300 H S RA P++ +NCA++PE +ESELFGH ++G FE+AN G++LLDEI Sbjct: 187 HYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEI 246 Query: 301 GEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRL 360 GEM +QAKLLR L + F R+G + VD+R+I AT ++L +V++G FREDL+YRL Sbjct: 247 GEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRL 306 Query: 361 NVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLK 420 NV+ L LPPLRD +DI L F+ +F+ E + ++LT ++WPGN+R+L Sbjct: 307 NVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELS 366 Query: 421 NAIYRALTQLDGYELRPQDILLPDYDA---ATVAVGEDAMEGSLDEITSRFERSVL-TQL 476 N I RA+ G + +D+ A E +L E R E+ ++ L Sbjct: 367 NVIERAVVMNSGPIIFSEDLPPQIRQPVCNAGEVKTAPVGERNLKEEIKRVEKRIIMEVL 426 Query: 477 YRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKK 510 + + + A LG+S A+ KL+EYG+ Sbjct: 427 EQQEGNRTRTALMLGISRRALMYKLQEYGIDPAD 460 >UniRef50_Q1PYB5 Similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYB5_9BACT Length = 645 Score = 495 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 131/501 (26%), Positives = 219/501 (43%), Gaps = 57/501 (11%) Query: 64 VTDVRTVPWMPSEREHLALSA-LLEALPEPVLSVDMKSKVDMANPASCQLFGQKLD-RLR 121 VTD+ L+ +L E + D + ++ A+ ++ LFG+ ++ Sbjct: 149 VTDLTEQKRNEEMLAEEKLTTQILNQAAEIFVLCDPQGRILRASQSTSSLFGRSPLFQVF 208 Query: 122 NHTAAQLINGFNFLRWLE--SEPQDSHNEHVVINGQN----FLMEITPVYLQDENDQHVL 175 + L L S E +G N FL+ P+ V+ Sbjct: 209 DEAFHLLYPDGMPFILLPAMSGKFLHAVEVNFKHGDNETYSFLLSANPLITHKGAIGIVV 268 Query: 176 TGA------------------------------------VVMLRSTIRMGRQLQNVAAQD 199 + L+ + + Sbjct: 269 VMVDITERRKMEDSRQKDHDKLEQQVEERTLELRTALSEIKTLKDRLEAENIYLRHENKR 328 Query: 200 VSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYL 259 F+QI+ S +K+V+ +A+++A +A +LI G+TGTGK+L A+A H SPR +P + Sbjct: 329 RHHFAQILGQSDSLKYVLYRAEQVAPTNATVLILGETGTGKELIAFAIHDMSPRKERPMI 388 Query: 260 ALNCASIPEDAVESELFGHAPE-------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLL 312 +NCA++P + +ESELFG + G FE ANG ++ LDEIGE+ +QAKLL Sbjct: 389 TVNCAALPGNLIESELFGREKGAFTGADTRRIGRFEVANGSTLCLDEIGELPLELQAKLL 448 Query: 313 RFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRD 372 R + F R+G H + VDVR++ T +NL E ++ G FR+DLYYRLNV + +PPLR Sbjct: 449 RVIQHNEFERLGSPHTIKVDVRIVATTNRNLEEEIRNGRFRQDLYYRLNVFPITVPPLRQ 508 Query: 373 CPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDG 432 +DI + FV R++ + G + + L Y WPGNVR+L++ I RA+ G Sbjct: 509 RKEDIPLMVHAFVERYSRKLGKQITSIQKEAMKALQDYPWPGNVRELESIIERAVILCPG 568 Query: 433 YELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGV 492 L+ D + + +L+E +L++ A LG+ Sbjct: 569 PVLQLAD------KLEISSPAFSSTVRTLEETERDQILKILSETRWRIEGKNGAAAILGI 622 Query: 493 SHTAIANKLREYGLSQKKNEE 513 + + ++ + G+ + + +E Sbjct: 623 HPSTLRARMHKLGIVRPETKE 643 >UniRef50_Q4K4Y9 Sensory box-containing sigma-54 dependent transcriptional regulator n=2 Tax=Gammaproteobacteria RepID=Q4K4Y9_PSEF5 Length = 464 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 134/451 (29%), Positives = 218/451 (48%), Gaps = 31/451 (6%) Query: 82 LSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNF-----LR 136 LL AL + V D + + N A +L G L +L+ LR Sbjct: 15 FEELLNALHDGVYITDGQGQTLKVNQAYERLTGLNGAELLGRPMQELVKSGVISQSASLR 74 Query: 137 WLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGA--------VVMLRSTIRM 188 L+ S + + +G+ L+ TP+ D++ ++V++ + R ++ Sbjct: 75 VLQDGRPVSVMQSLS-HGKKLLVSATPILAADQSIRYVVSTVRDMTELLRIKRERDELQQ 133 Query: 189 GRQLQNVAAQDVSAFSQIVAVSPKMK------HVVEQAQKLAMLSAPLLITGDTGTGKDL 242 +QL+ A+ + + SP M V QA+++A +L+ G+TG GK L Sbjct: 134 LKQLRTSTARLHAGQRDDLLQSPLMADQEVSGRVFAQARQVADCDVKVLLQGETGVGKTL 193 Query: 243 FAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGFFEQANGGS 294 A H AS RA +P+LALNC ++PE+ +E+ELFG+AP GK+G E A+ G+ Sbjct: 194 VAQFIHNASARAREPFLALNCGALPENLIEAELFGYAPGAFTGAGSKGKRGLLELAHNGT 253 Query: 295 VLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFRE 354 + LDEIG++ +Q KLL+ + + F VG VDVR+I AT +L + V +G FR Sbjct: 254 LFLDEIGDLPLAVQVKLLKVIEENRFIPVGGLELKEVDVRIISATHHDLKQRVAEGKFRA 313 Query: 355 DLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPG 414 DLYYRLNV+ + +P LR+ ++I PL E ++ F + + + +L YAWPG Sbjct: 314 DLYYRLNVVPIAIPALRERSEEIGPLLEYYLEHFNQRYQRQV-QWSLEALELLGEYAWPG 372 Query: 415 NVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLT 474 N+R+L N + R + G + D+ + A D L ++ ER + Sbjct: 373 NIRELINVVERLVVTCSGQVIEALDLPEDLIEQQ--ARNTDDSRLPLRKVLENAERQAIR 430 Query: 475 QLYRNYPSTRKLAKRLGVSHTAIANKLREYG 505 + + +TR AK LGVS + K++ + Sbjct: 431 AALQLHKTTRLAAKALGVSQATVVQKMKRWE 461 >UniRef50_C8W392 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W392_DESAS Length = 459 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 125/417 (29%), Positives = 196/417 (47%), Gaps = 30/417 (7%) Query: 112 LFGQKLDRLRNHTAAQLIN----GFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQ 167 L +L + + + + + ++L Sbjct: 50 LLDIRLPDADGIEVMDKLKQMGIEVPVILMTAFGTTEIAIQAMKQGAHDYL--------N 101 Query: 168 DENDQHVLTGAVVMLRSTIRMGRQ---LQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLA 224 + L AV R+ + L+ Q+ + + S M+ V + K+ Sbjct: 102 KPLNLDELVLAVQKSIKMQRLVSEVAILREELDQETDSVDSFIGQSRHMQDVFKTIGKVV 161 Query: 225 MLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--- 281 +LI G++GTGK++ A H S R+ +P++ +NCA+IPE +ESELFGH Sbjct: 162 DSDITVLIQGESGTGKEVVARTIHSNSRRSSRPFIKINCATIPEQLMESELFGHEKGSFT 221 Query: 282 ----GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVIC 337 K G FE A+ G V LDEIGE+ QAKLLR L + F RVG + VDVR++ Sbjct: 222 GAVSQKAGKFEIAHNGIVFLDEIGELPLHTQAKLLRVLQEKEFERVGGTKSIEVDVRILA 281 Query: 338 ATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRP 397 AT +NL ++VQ+G FREDLYYRLNV+ + LPPLR+ +DI L FV +FA + Sbjct: 282 ATNRNLEDMVQEGKFREDLYYRLNVVNVKLPPLRERKEDISLLINYFVKKFARKYNKNIS 341 Query: 398 KLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILL-------PDYDAATV 450 ++ + +YAWPGNVR++KN +A+ L D+ L ++ Sbjct: 342 GISQEAMIFAEKYAWPGNVREIKNVCEQAVVMARNSVLMLDDMPLIGNGNGFLEFKNNAK 401 Query: 451 AVGEDAMEGSLDEITSRFERS-VLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 + + SL +I + E+ +L L N + + AK LG++ ++ K++EY L Sbjct: 402 ISLDTNDKRSLKDIVAEVEKQVILKSLNENNWNRQNTAKALGLNRRSLYAKMKEYDL 458 >UniRef50_B8FUC3 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FUC3_DESHD Length = 696 Score = 494 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 119/477 (24%), Positives = 222/477 (46%), Gaps = 27/477 (5%) Query: 51 FSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASC 110 + A + + H+ +L + E ++ D + K+ N Sbjct: 219 LGLITAMAVAVENKLRFTKSYQLLKSAHHMQ-EVILSVIEEGIIITDNRGKIITINKEVV 277 Query: 111 QLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVING--QNFLMEITPVYLQD 168 +F + + T + + G + + E + N +++L+ I P+ Sbjct: 278 NIFNTAEEEIIGRTIDRFL-GPQIGEAVRNNETVDIEEAICSNNHDKSYLVLIRPL---- 332 Query: 169 ENDQHVLTGAVVMLRSTIRMGRQLQNVAAQ-DVSAFSQIVAVSPKMKHVVEQAQKLAMLS 227 + + GAV+ + + + N F +I+ S +K + ++ ++ + Sbjct: 333 DKHGNYPNGAVLRVNPMEIINALVTNRTGAFATYTFDKIIGKSKAIKETISLGKRFSLSN 392 Query: 228 APLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA-------- 279 +L+TG++GTGK+LFA A H A R P++A+NCA++P + +ESELFG+ Sbjct: 393 ENILLTGESGTGKELFAQAIHNA-HRPQGPFIAVNCAAMPRELIESELFGYEGGSFTGAE 451 Query: 280 PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICAT 339 G+ G E A+GG++ LDEIG+M +QA LLR L D R+G VD R++ AT Sbjct: 452 RRGRAGKIELAHGGTLFLDEIGDMPLEVQAILLRVLEDKKVMRIGGHTYKKVDFRLVAAT 511 Query: 340 QKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKL 399 K+L + + +FR DL++RL++L++ LPPLR D+ L F+ ++ + P + Sbjct: 512 NKDLERMSHENLFRSDLFFRLSILSIQLPPLRKRDNDVEVLANYFIGKYCAKIKRKAPLI 571 Query: 400 AADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVA------VG 453 + + VL Y WPGNVRQL+N++ A+ G ++ + + Y A++ Sbjct: 572 SEEALEVLKSYGWPGNVRQLENSVIYAVNLAQGDLIQCRHLPESLYAASSSPAENYRDPP 631 Query: 454 EDAMEGSLDEI--TSRFERSVLT-QLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 +L+ I E+ ++ LY+ + K ++ LG++ + + K +E + Sbjct: 632 GMTGSYTLENIYKIDVMEKILIENALYKTRNNITKASELLGMAKSTLYRKAKELNID 688 >UniRef50_B1KVR7 Sigma-54 dependent transcriptional regulator n=11 Tax=Clostridium RepID=B1KVR7_CLOBM Length = 470 Score = 494 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 133/441 (30%), Positives = 218/441 (49%), Gaps = 23/441 (5%) Query: 82 LSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESE 141 L E ++ +D + N + D+L+ ++ +I + F+ Sbjct: 28 LQTAFNVAYEGLILIDENYNILKINTMGLNILNSTEDKLKKYSIKDIIRNYKFIDDCLQN 87 Query: 142 PQDSHNE----HVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAA 197 + + N + I PV LQD + GA++ +R T + + + NV Sbjct: 88 GIHKLSIDSSFLINNNSIRCITNIMPVKLQD-----SIIGAIISIRDTRHIHKLVNNVVG 142 Query: 198 -QDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGK 256 + F I+ + KMK ++E A+K + +LI G++GTGK+LFA A H S R Sbjct: 143 YKASYTFDDIITKNQKMKSIIELAKKASESDCSILIDGNSGTGKELFAQAIHNHSNRCHG 202 Query: 257 PYLALNCASIPEDAVESELFGHAPE--------GKKGFFEQANGGSVLLDEIGEMSPRMQ 308 P++A+NCA+IP + VESELFG+ G G FE A+GG++ LDEIGE+ +Q Sbjct: 203 PFVAVNCAAIPRELVESELFGYEKGAFTGASKGGYPGKFELADGGTIFLDEIGELPLDIQ 262 Query: 309 AKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLP 368 +KLLR L++ RVG HE +D+RV+ AT +NL E V FR DLYYRLNV+ ++L Sbjct: 263 SKLLRVLDNLKIMRVGGTHEKKIDIRVLAATNRNLSEEVSNKNFRGDLYYRLNVINVHLI 322 Query: 369 PLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALT 428 PL+D +D+ LT FV + + K+A + L Y WPGNVR+L+N + R+ Sbjct: 323 PLKDRVEDVEALTNCFVDKLNIKNPGNFKKIAPEFMDKLKAYHWPGNVRELRNIVERSYY 382 Query: 429 QLDGYELRPQDIL--LPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKL 486 + + + + L + +G++ LD + +++ L + + Sbjct: 383 ICEDNIITDKFLNNKLMKNEHHNCCIGKEEPIVPLDILEH---KAIEKALIHCKGNIVQA 439 Query: 487 AKRLGVSHTAIANKLREYGLS 507 ++ LG+S I K+ +Y + Sbjct: 440 SELLGISRATIYRKINKYNID 460 >UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulator n=7 Tax=Myxococcales RepID=Q1D6H5_MYXXD Length = 474 Score = 494 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 126/420 (30%), Positives = 195/420 (46%), Gaps = 37/420 (8%) Query: 119 RLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGA 178 + T + DS + + +++ DQ L+ Sbjct: 62 EVLG-TIRAANPDVPVIIITAHGTVDSAVDAIKAGAFDYIT--------KPFDQAELSSV 112 Query: 179 VVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGT 238 V T R+ + +A I+ S ++ V + K+A + +LITG++GT Sbjct: 113 VAKAAKTNESARRSVRPDVKARAA---IIGDSSTIQEVYKIIDKVADTPSTVLITGESGT 169 Query: 239 GKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPEG-------KKGFFEQAN 291 GK+L A A H AS R KP++ +NCA+IP +ESELFG+ K G FE A+ Sbjct: 170 GKELIATALHGASSRRDKPFIKINCAAIPHTLLESELFGYERGAFTGAVTSKPGRFELAD 229 Query: 292 GGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGM 351 G++ LDEIGE+ MQ KLLR + +G F RVG VDVR++ AT ++L ++ G Sbjct: 230 EGTLFLDEIGEIPVEMQVKLLRAIQEGEFERVGGIKTTRVDVRLVAATNRDLQAEIEAGR 289 Query: 352 FREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYA 411 FR+DLYYRL V+ ++LP LR+ D+ L FV ++ +A D +L YA Sbjct: 290 FRKDLYYRLAVVPISLPALRERRSDVPMLARHFVEKYNRRLNKKIEGIADDAMALLQGYA 349 Query: 412 WPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGE-----------DAMEGS 460 WPGN+R+L+N I R L DG + +D+ P V G E Sbjct: 350 WPGNIRELENLIERVLLFADGPLITARDLPEPVRQGTGVQAGANLASAVASIDVPTGEVG 409 Query: 461 LDEITS----RFERSVL-TQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQ--KKNEE 513 L +I ER ++ +L + + A+ L +S ++ K++E+GL +E Sbjct: 410 LKDIVRMKAAELERDLIVKKLEETGGNVTRAARLLQISRKSLQTKMKEFGLRDTTPDGQE 469 >UniRef50_C1PCQ8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Bacillus RepID=C1PCQ8_BACCO Length = 455 Score = 494 bits (1272), Expect = e-138, Method: Composition-based stats. Identities = 116/450 (25%), Positives = 209/450 (46%), Gaps = 28/450 (6%) Query: 82 LSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESE 141 L + E L VD + + + C + + + I +++ Sbjct: 12 LDIVFEKTYSGTLIVDHEGYIRYMSRNFCDFLKVERNEVIGEHVTHTIENTRMHLVVKTG 71 Query: 142 PQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQD-- 199 + + + G+ + P+ + V L ++ ++++ +Q Sbjct: 72 KAELA-QLQFLRGEYVIANRIPIIEDGKILGAVGIIIFRDLYDWQKLNTHIRHMLSQSGF 130 Query: 200 -----------VSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACH 248 + ++ S +M + E+ +K++ +LITG++GTGK+L A++ H Sbjct: 131 LLEKQPRAAGVKYMLNDLIGTSRQMALLKEKIKKVSRGDITVLITGESGTGKELVAHSIH 190 Query: 249 QASPRAGKPYLALNCASIPEDAVESELFGHAPEG--------KKGFFEQANGGSVLLDEI 300 +S R+ P++ +NC +IPE +ESELFG+ K G F+ A GG++ LDEI Sbjct: 191 SSSDRSSGPFIKINCGAIPEHLMESELFGYEEGSFTGAKKGGKPGKFQAAEGGTIFLDEI 250 Query: 301 GEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRL 360 G+M MQ KLLR L + VG H +DVR+I AT + L ELV++ FR+DLYYR+ Sbjct: 251 GDMPVMMQVKLLRVLQEKEIEPVGAVHPKPIDVRIIAATNQPLKELVEQNRFRKDLYYRI 310 Query: 361 NVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLK 420 N + L++PPLR +DI L F+ + + G + + + L Y WPGN+R+L+ Sbjct: 311 NAIQLDIPPLRTRVEDIPLLARHFLKKASSGLGKRVTGFSPEALSALEGYNWPGNIRELE 370 Query: 421 NAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYR-N 479 NA++ A+ + +D+ + E SL E E+ ++ + R Sbjct: 371 NAVHAAVYMASSDTIGLEDLPDGIREH-----LNRKKESSLKERMEAAEKQMIEEALRAA 425 Query: 480 YPSTRKLAKRLGVSHTAIANKLREYGLSQK 509 ++ AK LG+ H+ + +K+++ + K Sbjct: 426 CFDKKQAAKALGIGHSTLYDKMKKLRIEVK 455 >UniRef50_B7R881 Sigma-54 interaction domain family protein n=3 Tax=Firmicutes RepID=B7R881_9THEO Length = 478 Score = 494 bits (1272), Expect = e-138, Method: Composition-based stats. Identities = 133/474 (28%), Positives = 218/474 (45%), Gaps = 35/474 (7%) Query: 69 TVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQL 128 + +P E AL LLE + V D N AS Q+ G +D + Sbjct: 4 RLKGLPQEFYQKALEILLENIDWGVQITDKDGYTIYYNKASSQIDGIPIDEAIGKHVLAM 63 Query: 129 INGFN-----FLRWLESEPQDSHNEHVVIN----GQNFLMEITPVYLQDE---------- 169 + L+ L + +E + N + P+ + E Sbjct: 64 FPSLSNRESTILKVLRTGEPVVGHEQEITNCYGQKVSLFTITLPIVIDGEICGAIDISKN 123 Query: 170 -NDQHVLTGAVVMLRSTIRMGRQLQNVAAQDV--SAFSQIVAVSPKMKHVVEQAQKLAML 226 ++ L V+ LR +R R+ V + F I+ S + + +AQK+A Sbjct: 124 LSEIKNLMTKVIDLREEVRNNRKKSAVKENEEAYYTFDDIIGESKVITELKCKAQKIAKS 183 Query: 227 SAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPEG---- 282 ++P+ + G+TGTGK+L A H ASPR P++A NCA++PE+ +ES LFG Sbjct: 184 NSPVFVYGETGTGKELLVQAIHNASPRKNGPFIAQNCAALPENLMESILFGTVKGSFTGA 243 Query: 283 --KKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQ 340 + G E A+GG++ LDEI +S +QAKLLRFL +G RR+G+ VDVRVI A+ Sbjct: 244 ENRPGLVELADGGTLFLDEITSLSLDLQAKLLRFLQEGYIRRIGDSKVRKVDVRVIAASN 303 Query: 341 KNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLA 400 + E ++K + R DL+YRL+ + L +PPLR+ DI L + F+ F + G ++ Sbjct: 304 ISPYEALEKKILRPDLFYRLSTIVLYVPPLRERKSDIPLLVKHFIKEFNWQLGKDIKGIS 363 Query: 401 ADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAA------TVAVGE 454 ++ L +WPGNVR+LK I A + ++ D+ A +AV Sbjct: 364 EEVERALMSLSWPGNVRELKGVIEYAANFCESEIIQLHDLPDHILRNAFIEGEKEIAVDT 423 Query: 455 DAMEGSLDEITSRFERSVL-TQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 +EG L ++ E ++ L + + + A+ LG+ + K++ ++ Sbjct: 424 IGIEGDLRSFLAKVEYELITKTLKKTNGNISRAAEILGIPRQTLQYKIKMLKIN 477 >UniRef50_C6BZ70 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BZ70_DESAD Length = 458 Score = 494 bits (1272), Expect = e-138, Method: Composition-based stats. Identities = 135/461 (29%), Positives = 225/461 (48%), Gaps = 30/461 (6%) Query: 73 MPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQL---- 128 M + L L +++ + + ++ V + N A ++ G D L N + L Sbjct: 1 MTEQDIDLYLREVIDTMNDGLIIVSPDGIIMKVNDALLRMTGFSKDELLNKPCSVLGCDA 60 Query: 129 ------INGFNFLRWLESEPQDSHNEHVV-INGQNFLMEITPVYLQDENDQHVLTGAVVM 181 + ++ E + + N H++ NG + L+D+ D + GAV Sbjct: 61 CRIVREQSDGHWCGLFERKKESRKNCHIIGKNGNYLHVLKNASLLRDDED--NILGAVET 118 Query: 182 LRSTIRMGR------QLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGD 235 + + R +L + + F V SP M+ V K A AP++I G+ Sbjct: 119 VTDISELDRKELKIRELSRKLQHEENGFCGFVGHSPAMQKVYTLLGKAARSDAPVIIYGE 178 Query: 236 TGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPEG-------KKGFFE 288 +GTGK+L A A H+ SPRA KP++ LNCA++ E +ESELFGH ++G FE Sbjct: 179 SGTGKELAAQAIHEMSPRADKPFVQLNCAALNESLLESELFGHVKGAFTGAYRHRQGRFE 238 Query: 289 QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQ 348 +A GS+ LDEIG++ +Q KLLR L +F RVGE+ + ++ R+I AT ++L +LVQ Sbjct: 239 EAADGSIFLDEIGDVPLPIQVKLLRVLETRSFERVGENINLSMEARLITATNQDLNQLVQ 298 Query: 349 KGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLT 408 FRED ++R+NV+ ++LPPLR +D+ L + F++ P + L Sbjct: 299 DKQFREDFFFRINVIPVHLPPLRARKEDLPLLVDHFISVIDHLDHSEGP--TPETMRKLM 356 Query: 409 RYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRF 468 Y WPGNVR+LK+A+ A D ++P+ + + A +E + Sbjct: 357 EYQWPGNVRELKSALEYAAVVKDSGPIQPEHLPP--QINSVTADCCPCIEPPVPAAEPDE 414 Query: 469 ERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQK 509 ++ ++ L + + K AK LGVS I N++R++ + + Sbjct: 415 KQELINALNQAGGNKSKAAKLLGVSRGTIHNRMRKHSVQYR 455 >UniRef50_Q1Q6P9 Similar to Sigma-54 dependent transcriptional regulator n=2 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q6P9_9BACT Length = 512 Score = 494 bits (1272), Expect = e-138, Method: Composition-based stats. Identities = 115/476 (24%), Positives = 222/476 (46%), Gaps = 52/476 (10%) Query: 83 SALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTA---------AQLINGFN 133 ++++ L V+ +D + + N ++ + FG ++ +L N Sbjct: 35 KSIIDNLDSDVIILDKDLNIVLMNKSAERTFGVSFHEVKGTNYLALRLRSIEQELARNLN 94 Query: 134 FLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTI-RMGRQL 192 + + + + + + + + + D VL G + + + R+ +++ Sbjct: 95 NVLKTKKAFTIKELQIISPDKVTHFFDQSCIPILDG--GGVLQGVLSISKDVTKRVYKEI 152 Query: 193 Q-------------------------NVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLS 227 Q + ++ +F ++ S M+++ + +K++ Sbjct: 153 QYQESQKMLKALFQELEVKNTTIRSLQTSLRERYSFHSLIGKSYLMQNIYDLIEKVSQTD 212 Query: 228 APLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE------ 281 + +LITG+TGTGK+L A A H S R +A+NCA++PE +ESELFGH Sbjct: 213 STVLITGETGTGKELVARAIHYNSHRKDYNLVAVNCAALPETLLESELFGHVKGSFTGAI 272 Query: 282 -GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQ 340 KKG FE A+ G++ LDEIGE+S Q KLLR L + RVG++ + VD+R+I AT Sbjct: 273 RDKKGKFELADKGTIFLDEIGELSIPTQVKLLRVLQERYIERVGDEKTIKVDIRIIAATN 332 Query: 341 KNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLA 400 ++++EL++KG FR+DL+YRLN++++ LP L++ DI L F+ +F ++ Sbjct: 333 QDILELIEKGTFRKDLFYRLNIISIRLPSLKERTDDIPLLVNHFIEKFNIRFKKNINGIS 392 Query: 401 ADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGS 460 + L Y+WPGN+R+L+ I +A+ + + ++ + + + G Sbjct: 393 PNALRKLLAYSWPGNIRELEGVIEKAVLLEESETIENIELPTDHSATTNLCLPKPLNAGP 452 Query: 461 -------LDEITSRFERSVLTQL-YRNYPSTRKLAKRLGVSHTAIANKLREYGLSQ 508 L + ER + +++ +A G++ I NK++++ L + Sbjct: 453 DISSYEDLQKRLDMLEREYFVSVFQKHHGRIGSIAACTGLNRRTILNKMKKFSLKK 508 >UniRef50_C4XPI1 Fis family transcriptional regulator n=2 Tax=Desulfovibrio RepID=C4XPI1_DESMR Length = 653 Score = 494 bits (1272), Expect = e-138, Method: Composition-based stats. Identities = 136/488 (27%), Positives = 210/488 (43%), Gaps = 36/488 (7%) Query: 41 LNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKS 100 ++ + + A I +R + +LE L + V + Sbjct: 186 ISTENFHQHTLGLVEAAAHAIEEHLRLRALIASQ--------RVILELLDDGVAVLGADG 237 Query: 101 KVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVI----NGQN 156 + N +C + G + + LR + ++ Q H+ V + Sbjct: 238 TIVSLNGQACSMLGLSP-DVVGRDIRSFVRESEVLRAILADRQTFHDREVTFRLVQGELS 296 Query: 157 FLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNV-AAQDVSAFSQIVAVSPKMKH 215 + P G ++ LR T RM + V A+ V F I+ S ++ Sbjct: 297 CALSCAPFADG---------GVILTLRETRRMRKYAARVAGAKAVYTFEHILGQSKALRE 347 Query: 216 VVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESEL 275 V A+ A A L+ G++GTGK+LFA A H A R P++ +NC ++P + V+SEL Sbjct: 348 AVRLARVAAQGDATTLLLGESGTGKELFAQAVHNAGARRKGPFVVVNCGALPRNLVQSEL 407 Query: 276 FGHA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDH 327 FG+ EG G FE A+GG++ LDEIGEM Q LLR L + R+G Sbjct: 408 FGYVAGAFSGALKEGSPGKFELADGGTLFLDEIGEMPLEAQVSLLRLLQENEVTRLGGKE 467 Query: 328 EVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVAR 387 VDVR+I AT K+L V+ FR DLYYRLNVL++ +PPLR D+ LT LF+ + Sbjct: 468 ARRVDVRIIAATNKDLALAVRNNAFRGDLYYRLNVLSIAIPPLRQREGDVPLLTRLFLDK 527 Query: 388 FADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDA 447 F G P +++ + L + WPGNVR+L+N I R + + D+ Sbjct: 528 FTASLGKPELEISREALAALAAHHWPGNVRELENCIERLVNVACSSRIDIADLPQDVMTD 587 Query: 448 --ATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYG 505 SL I +L L + R+ + L +S T + KL++YG Sbjct: 588 MLRGRPAAPGEAGMSLKRIQRAL---ILETLRETGGNFRRASNLLNISRTTLYAKLKQYG 644 Query: 506 LSQKKNEE 513 +S + Sbjct: 645 ISADTFRD 652 >UniRef50_D1U6M0 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U6M0_9DELT Length = 954 Score = 493 bits (1271), Expect = e-138, Method: Composition-based stats. Identities = 136/481 (28%), Positives = 231/481 (48%), Gaps = 28/481 (5%) Query: 49 ESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPA 108 ++ +I + E+ L L A ++P+ +++VD + +V N A Sbjct: 479 SEIQTVGRDITERREAERALGLAMAEKEQYRLNLEATFRSIPDAIITVDSELRVIATNSA 538 Query: 109 SCQLFGQKLDRLRNHTAAQLIN-----GFNFLRWLESEPQDSHNEHVV-----INGQNFL 158 + L G +R ++++ + L+ + + H + + Sbjct: 539 AGSLLGIDRERANGVHFSEVLPVPGNACLSVLKQVLRTSRSVHGYEAEFTIPALGVRTAE 598 Query: 159 MEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVE 218 + TP+ QD+ +GAV+++R R+ + + Q+ F I+ S M+ + Sbjct: 599 LNCTPLIDQDKRH----SGAVLVVRDISRIADLEKRL--QERQGFRGIIGRSSAMQDIYR 652 Query: 219 QAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH 278 ++L+ L + ++I G++GTGK+L A A H RAG P + +NC+++ E +ESELFGH Sbjct: 653 LLEQLSSLDSTVIILGESGTGKELVAEALHYGGSRAGHPMVKVNCSALTESLLESELFGH 712 Query: 279 APE-------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHV 331 K G + A GG++ LDEIG++SP +Q KLLRFL + RVGE Sbjct: 713 VRGAFTGAIRDKAGRIQTAEGGTLFLDEIGDISPLIQLKLLRFLEQKEYERVGESRTSVA 772 Query: 332 DVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADE 391 DVR+I AT +L V++G FREDLYYRLNV+ ++LPPLR DI L + F+ F+ + Sbjct: 773 DVRIIAATNADLRGSVRRGAFREDLYYRLNVMPVSLPPLRARQADIPLLVDHFLELFSSQ 832 Query: 392 QGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDA---- 447 G +A ++ + YAWPGN+R+L++ + A G E+ + + D Sbjct: 833 FGKAFEVVAGEVMDLFMSYAWPGNIRELRHILEHACILSPGGEILLKHMRRDFVDHMFGS 892 Query: 448 ATVAVGEDAMEGSLDEITSRFERS-VLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 A G + R VL L R + + A++LG+ + +L+ +GL Sbjct: 893 GQGAPMAGPPTGPVAASGRATGREGVLAALERCGGNKARAARQLGIHRATLYRRLKGWGL 952 Query: 507 S 507 + Sbjct: 953 A 953 >UniRef50_Q6AL05 Related to transcription activator Stc n=1 Tax=Desulfotalea psychrophila RepID=Q6AL05_DESPS Length = 657 Score = 493 bits (1270), Expect = e-138, Method: Composition-based stats. Identities = 131/486 (26%), Positives = 238/486 (48%), Gaps = 24/486 (4%) Query: 38 RIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVD 97 ++++ L ++ ++ + ++ + ++ ++ ++A++E+ +++VD Sbjct: 181 NMHVHTIGLVSQASKNIRSRLQSLEKQQEIAI--------KNQYMTAIIESKSSGIVTVD 232 Query: 98 MKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHV-VINGQN 156 + + N + L K D N + N N LE E V G + Sbjct: 233 QQGNIVQTNHKARNLLAIKADARDNLLTTYIGNSLNIADCLERGRGFRAREIVSKKTGVS 292 Query: 157 FLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHV 216 + + P+ L++E ++ G + + R ++ + Q F I+ SP +K Sbjct: 293 YFASLDPIRLEEE---QLVGGIFTFVEKNEALRRAVKLIGTQAPFTFDSILGDSPALKSA 349 Query: 217 VEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELF 276 + A+ A +A +L+ G+TGTGK+LFA A H AS ++A+NC +IP++ +ESELF Sbjct: 350 LHLARISAKNTASVLLYGETGTGKELFAQAIHNASEHKNGSFVAINCGAIPKELLESELF 409 Query: 277 GHA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHE 328 G+ G+ G E AN G++ LDEIG+M MQ KLLR L G +RVG Sbjct: 410 GYEEGAFTGAQKGGRPGKIELANNGTLFLDEIGDMPFEMQVKLLRVLQFGEIQRVGGLRT 469 Query: 329 VHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARF 388 + V++R+I AT K+L +++ FR DLYYR++ L +N+PPLR+ DI+ L + F+ R Sbjct: 470 IPVNLRIISATHKDLKKMIDVQQFRADLYYRISTLRINIPPLRERQGDILKLVQYFIDRH 529 Query: 389 ADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAA 448 + + L + +++Y+WPGN+RQL++A RA+ + L P+ + D + Sbjct: 530 IIKFDRRKQVLPSQTRLAISKYSWPGNIRQLESATERAIYLAEDGVLLPEHFAISDLFSN 589 Query: 449 TVAVGEDAMEGSLDEITSRFERSVLTQLYRNY-PSTRKLAKRLGVSHTAIANKLREYGLS 507 T + + E ++T+ + + K A+ LG+S + K+ +Y + Sbjct: 590 TNKEVVKVVGT---QTLEEVESQIITETLAFFDNNISKTAQSLGISRPTLYRKIDKYRIV 646 Query: 508 QKKNEE 513 K E Sbjct: 647 LTKGHE 652 >UniRef50_Q46802 Uncharacterized sigma-54-dependent transcriptional regulator ygeV n=60 Tax=Gammaproteobacteria RepID=YGEV_ECOLI Length = 592 Score = 493 bits (1270), Expect = e-138, Method: Composition-based stats. Identities = 130/506 (25%), Positives = 232/506 (45%), Gaps = 39/506 (7%) Query: 20 LLVLRGIDLRG-IEIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVP-WMPSER 77 +L R + + I + + +++ EF + +R I+ + + + P + Sbjct: 104 ILQDRCVGVISLIAVTHEQQEHISDNLREFSDY------VRHISTIFVSKLLEDQGPGDN 157 Query: 78 EHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRW 137 + +++ + + VL VD +++V N + + G + + Sbjct: 158 ISKIFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIR------FRPLT 211 Query: 138 LESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAA 197 ES H +H+V + I H + G + L + + A Sbjct: 212 FESNFTHGHMQHIVSWDDKSELII--------GQLHNIQGRQLFLMAFHQSHTSFSVANA 263 Query: 198 QDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKP 257 D Q+V M+ + ++A + +++ G++GTGK++ A A H+ S R KP Sbjct: 264 PDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKP 323 Query: 258 YLALNCASIPEDAVESELFGHAPE--------GKKGFFEQANGGSVLLDEIGEMSPRMQA 309 ++A+NCA+IPE +ESELFG+ GK G + AN G++ LDEIG+M +QA Sbjct: 324 FIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQA 383 Query: 310 KLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPP 369 KLLR + +G + VD+R+I AT +NL + + +G FREDL+YRLNV+ + LPP Sbjct: 384 KLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPP 443 Query: 370 LRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQ 429 LR+ +DI L F+ G P +A D+ +L ++ WPGN+R+L N + + Sbjct: 444 LRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNV 503 Query: 430 LDGYELRPQDILLPDYDAATVAVGEDAME-----GSLDE----ITSRFERSVLTQLYRNY 480 + E+ +L P+ D E SLD+ E+ ++ + + Sbjct: 504 VPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH 563 Query: 481 PSTRKLAKRLGVSHTAIANKLREYGL 506 S +++A LG+ + K+++Y L Sbjct: 564 NSKKQVADELGIGIATLYRKIKKYEL 589 >UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=Q2IQM1_ANADE Length = 485 Score = 493 bits (1270), Expect = e-138, Method: Composition-based stats. Identities = 132/393 (33%), Positives = 199/393 (50%), Gaps = 22/393 (5%) Query: 123 HTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVML 182 A + + F+ ++ E + +N+L+ D + + + Sbjct: 76 RRAREQGSDAVFVMMTAFASVEAAVEAMRAGAENYLV--------KPLDVNAVLVVLEKA 127 Query: 183 RSTIRMGRQLQNVAAQ--DVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGK 240 +R+ R N+ + + F IV +P++ V E ++ A A +LI G++GTGK Sbjct: 128 LEKLRLQRDTANLRERVRERYRFHNIVGDAPELHAVYEVVKRAAPTRATVLILGESGTGK 187 Query: 241 DLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE-------GKKGFFEQANGG 293 +LFA A H+ SPRA K ++ +NCA++ E +ESELFGH K+G FE A+GG Sbjct: 188 ELFAQALHEESPRADKAFIKVNCAALSETLLESELFGHEKGAFTGAIGRKEGRFELADGG 247 Query: 294 SVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFR 353 ++ LDEIG++SP +Q KLLR L F RVG + VDVR++ AT ++L V+ G FR Sbjct: 248 TLFLDEIGDISPALQIKLLRVLQQREFERVGGTQTLKVDVRLVAATNRDLAAEVKNGRFR 307 Query: 354 EDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWP 413 EDLYYRLNV+ + LPPLR DI L F+ +++ G LA + + WP Sbjct: 308 EDLYYRLNVVAVTLPPLRQRKGDIPALVSHFIDKYSKAYGKDIRGLAPGTLNAVLSHDWP 367 Query: 414 GNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAAT--VAVGEDAMEGSLDEITSRFERS 471 GNVR+L+N + RA+ G EL D+ A G +L EI + Sbjct: 368 GNVRELENVVERAVVLCKGSELTADDLPPTLRGPRPRERAPGALIPGATLYEIERE---A 424 Query: 472 VLTQLYRNYPSTRKLAKRLGVSHTAIANKLREY 504 +L L ST + A+ LG+S I +L+EY Sbjct: 425 ILRTLEMVGGSTSRAAEILGISVRKIQYRLKEY 457 >UniRef50_D1U4X2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U4X2_9DELT Length = 442 Score = 493 bits (1270), Expect = e-138, Method: Composition-based stats. Identities = 130/440 (29%), Positives = 211/440 (47%), Gaps = 22/440 (5%) Query: 82 LSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFN------FL 135 L +L+++ V +VD + N + ++ G + Sbjct: 10 LRRVLDSVALGVFAVDRDWNITFFNREAERITGYSTQEALGMQCRDVFRSERCSTRCYLR 69 Query: 136 RWLESEPQDSHN--EHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQ 193 + + S+ E + + + +E+T L DE Q V G V L RQ Sbjct: 70 QAMRSKRSVIKVRLEILNRHNRRIPLEVTAAVLYDE--QGVTLGGVESLLDLT--VRQNL 125 Query: 194 NVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPR 253 + FS +V P M+ + + +A A +L+ G+TGTGKDL A A H S R Sbjct: 126 ETCVRQSYRFSDLVGRDPAMQRLFQTMAVVAPTEAAVLLLGETGTGKDLVARAIHNLSRR 185 Query: 254 AGKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPR 306 A P++ +NCA+IP + +ESELFG+ A + K G F +A GGSV LDE+G++ Sbjct: 186 ASGPFVKVNCAAIPANLLESELFGYRKGAFTDARQDKPGLFAKAAGGSVFLDEVGDIPRE 245 Query: 307 MQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLN 366 QAKLL+ L++ + +G VDVR++ AT ++L LVQKG FR DLYYRL V+ ++ Sbjct: 246 SQAKLLQVLDEHAYIPLGATDPESVDVRLVAATNRDLAALVQKGAFRSDLYYRLRVVEVD 305 Query: 367 LPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRA 426 +PPLR DI L E F+ FA QG P +A +L +Y +PGNVR+L++ + Sbjct: 306 IPPLRRRRCDIPLLIEHFIIEFAARQGKPVQGVAPKAMHILLQYDYPGNVRELRHIVEHG 365 Query: 427 LTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKL 486 + E+R +D+ + + + + + + L R++ + Sbjct: 366 VILSTTDEIRARDLPRYLTQRSDGSYFDPIVSNQTGDDERE---RLRQALDRHHWRVSET 422 Query: 487 AKRLGVSHTAIANKLREYGL 506 A+ LG+ T + + +++GL Sbjct: 423 ARALGIDRTTLWRRRKKHGL 442 >UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Clostridium tetani RepID=Q893M0_CLOTE Length = 595 Score = 493 bits (1270), Expect = e-138, Method: Composition-based stats. Identities = 121/403 (30%), Positives = 203/403 (50%), Gaps = 18/403 (4%) Query: 123 HTAAQLINGFNFLRWL--ESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVV 180 L N + + SE + + +V G+ ++ + + + + G+ Sbjct: 193 KNRTTLKEDINLVNNIFKASEKYNKNIIKMVYGGKIEDADMAGYFYDNTDAVGYIGGSSF 252 Query: 181 MLRSTIRMGRQLQ------NVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITG 234 + R+ + + N D F +++ S MK + E +K+A + +++TG Sbjct: 253 ERIPSERIIKSVTHEFKNFNKLNNDKIGFKEMIGQSNSMKELYELIEKVADKNVNIMVTG 312 Query: 235 DTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPEG-------KKGFF 287 ++GTGK+L A H R P++ +NCA++P+D +ESELFGH + G F Sbjct: 313 ESGTGKELVVRALHYGGERRDNPFVKVNCAAMPKDILESELFGHEKGAFTGADKKRVGRF 372 Query: 288 EQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELV 347 E A+ G++ LDEIG+M +QAK LR + F RVG + + VDVR+ICAT K+L + V Sbjct: 373 ELAHKGTLFLDEIGDMDLSIQAKFLRIIQQQEFERVGGNKTIKVDVRIICATNKDLKKEV 432 Query: 348 QKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVL 407 ++G FREDLYYRLN +TL +PPLR+ +DI L F+ + PK++ ++ L Sbjct: 433 KEGRFREDLYYRLNTITLYVPPLRERKEDIPFLIHHFLKEKGKKFDKIAPKISPEVFDAL 492 Query: 408 TRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATV-AVGEDAMEGSLDEI-T 465 Y WPGNVR+L+NA+ RA+ +R ++ + + + EI Sbjct: 493 MEYDWPGNVRELENAMERAIILCGKDLIRLNNLPISIVKNNKEFDESKHVTPIDIKEITI 552 Query: 466 SRFERS-VLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 ER ++ L + + K +K LG+S + NK++E+ + Sbjct: 553 RNMEREIIIEALEKCDWNRTKTSKSLGISRRTLYNKMKEFNIR 595 >UniRef50_B1B869 Propionate catabolism operon regulatory protein n=1 Tax=Clostridium botulinum C str. Eklund RepID=B1B869_CLOBO Length = 637 Score = 492 bits (1269), Expect = e-138, Method: Composition-based stats. Identities = 116/506 (22%), Positives = 231/506 (45%), Gaps = 45/506 (8%) Query: 27 DLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALL 86 D G + E+ ++ + E RI + + + + ++ Sbjct: 147 DTIGTYVTRKLGCTSYMITSGREAITNAIEEAARILKI-------SISEREKSEKIKTII 199 Query: 87 EALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSH 146 + + + +++++ K+ + N ++ +F + +LI + L+ Sbjct: 200 DFVQDGIIAINDNEKITIFNRSAQNIFNINGENFIGKDIRKLIKDSKLPKVLKCGKLQL- 258 Query: 147 NEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQ-------D 199 E + + P+ + + + GA+ + + + + + Sbjct: 259 GEVESLGKSKIAVNRIPIIVDKK-----IIGALATIEDVTYIQDLEKKLRCKLYKKGFIA 313 Query: 200 VSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYL 259 F I+ + + + +++A+K + P+LITG +G GK+LFA + H S R+ P++ Sbjct: 314 KYKFQNIIYKNKETEECIKRAKKYSKYDVPILITGPSGVGKELFAQSIHNYSNRSTGPFV 373 Query: 260 ALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKL 311 A+NCA++P + +ESELFG+ GK G FE A+ G++ LDEIGE+ Q ++ Sbjct: 374 AINCAALPPNLIESELFGYVEGAFTGAVKGGKSGIFELAHKGTIFLDEIGELPLEFQGRI 433 Query: 312 LRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLR 371 LR L + R+G+D + +DVR+I AT KNLV+++++ FREDLY+R+N+L L++P L Sbjct: 434 LRVLQEREVMRIGDDKVIPIDVRIITATNKNLVKMIEEKRFREDLYFRINILMLDIPSLN 493 Query: 372 DCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLD 431 +DI L + F+ ++ + L + L Y + GNVR+L++ I R + + Sbjct: 494 KRREDIDILIQFFLKKYNHKYNKKVKGLTKESILYLMNYDYKGNVRELESIISRGIILCE 553 Query: 432 GYELRPQDILLPDYDA--------------ATVAVGEDAMEGSLDEITSRFERSVLTQLY 477 + +I+ D + + + +LD++ ++ R +++ Sbjct: 554 NEYVSLDEIMTIDEINTINKNNMSYNDTCISNKDMFKSESNKTLDDLEKQYIRHIVS--- 610 Query: 478 RNYPSTRKLAKRLGVSHTAIANKLRE 503 R K AK L +S + I KL++ Sbjct: 611 RCNGEITKAAKILNISRSTIWRKLKK 636 >UniRef50_C3WG76 Sigma-54 dependent transcriptional regulator n=2 Tax=Fusobacterium RepID=C3WG76_FUSMR Length = 588 Score = 492 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 116/477 (24%), Positives = 222/477 (46%), Gaps = 30/477 (6%) Query: 49 ESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPA 108 ES+ +I G+ + + + L +LE + + V+ +D + + NP Sbjct: 124 ESYLHFTKQIAEFIGIKFFEYQENLLQKDQENTLKTILENINKGVIIIDKDNTIVSINPI 183 Query: 109 SCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQD 168 + + K + + + + IN ++F + + L Sbjct: 184 AIEKLNLKF-QCVGKKIIIITQNDYLMNE--------EVFKLSINNKDFTVVGKKISLTS 234 Query: 169 ENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSA 228 +++ + + ++ + + +V + + I S K + E K+A S+ Sbjct: 235 FDNRK---NSAFIFEDIKKINENIAEITNNNVISLNDIYGNSEATKKLKENILKIADTSS 291 Query: 229 PLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE------- 281 +LITG++GTGK+L A + H S R KP++ +NC++IP+ +ESELFG+ Sbjct: 292 TVLITGESGTGKELVARSLHSHSNRKNKPFVVINCSAIPDSLLESELFGYVKGAFTGANN 351 Query: 282 -GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQ 340 G+ G FE AN G + LDEIG+M +QAK+LR + + R+G + + +D+++I AT Sbjct: 352 NGRIGKFELANTGVIFLDEIGDMPLYLQAKILRVIQEKKIERIGSNKSIDLDIKIIAATN 411 Query: 341 KNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLA 400 NL E +++ FR DLYYRLNV+ L PLR+ +DI+P+ E + ++ G + Sbjct: 412 VNLEEKIKEQKFRSDLYYRLNVIPFKLLPLRERKEDILPIIEKLIKKYNRISGKNIISID 471 Query: 401 ADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGS 460 ++ Y WPGNVR+L+N I + +L + +V+ + + Sbjct: 472 DEVKQAFLSYDWPGNVRELENVIELMFNISGNSSILNSSLLPENISKKSVSNPPKSSQII 531 Query: 461 LDEITSRF------ERSVLTQLYRNYPSTRK----LAKRLGVSHTAIANKLREYGLS 507 + + F E++ + Q + +T + +++++G+ T + KL+ +G+ Sbjct: 532 IKNPSDDFENFDIIEKNYILQGLEKFGNTTEGKKIISEKIGIGLTTLYRKLKRFGIE 588 >UniRef50_C0Z7K7 Putative transcriptional regulator protein n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z7K7_BREBN Length = 455 Score = 492 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 130/450 (28%), Positives = 221/450 (49%), Gaps = 31/450 (6%) Query: 83 SALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQL-----INGFNFLRW 137 ALL +L + V D + + + + FG + + +R Sbjct: 5 EALLGSLFDIVHVTDAEGRTLHGSGRYEEFFGIDPREMVGKPIEEFYHLGYFAPTITMRV 64 Query: 138 LESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVA- 196 + + + H Q +E TP++ QD N V+ + + S ++ ++L V Sbjct: 65 IRDKKK-VHTIQTTRKNQKLFVEGTPIWDQDGNFSGVV-HTFIDITSQEQLQQELNEVKY 122 Query: 197 ------------AQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFA 244 + ++ S M+ V A+KL+ + + +++ G++G GK + A Sbjct: 123 VGTVMQSEMTKENNRQKGETSLIYRSQSMEQVAMLAKKLSQVESSMILLGESGVGKGVLA 182 Query: 245 YACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE--------GKKGFFEQANGGSVL 296 H+ SPR KP++ +NC +IPE +ESELFG+ GK G E+ANGG++ Sbjct: 183 KYIHECSPRVDKPFVHINCGAIPETLLESELFGYEKGAFTGAFKDGKAGLIEKANGGTLF 242 Query: 297 LDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDL 356 LDEIGEMS +Q KLL L + T VG VDV++I AT KNL ++V++G FREDL Sbjct: 243 LDEIGEMSLSLQVKLLNVLQEKTITPVGSSVSRKVDVKLITATNKNLRQMVKEGRFREDL 302 Query: 357 YYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNV 416 YYR++V+ L +PPLR+ ++I L F+ F+ + + +LA +L+ Y WPGNV Sbjct: 303 YYRIHVVPLEIPPLRERQEEIPVLVHYFLNVFSQKYCLE-RQLADTCYRILSEYDWPGNV 361 Query: 417 RQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAME--GSLDEITSRFERSVLT 474 R+L+N + R + + P I ++ ++ ++ E ER ++ Sbjct: 362 RELENVVERLVVTSHDVLITPAQIPRYIHNQEYREHKGIKVDHVMAMQEAMDEVERQLVQ 421 Query: 475 QLYRNYPSTRKLAKRLGVSHTAIANKLREY 504 + Y + +T K+A+ LG+S + + KLR++ Sbjct: 422 RAYEQHKTTTKVAEALGISQPSASRKLRKW 451 >UniRef50_Q1N5U9 Sigma-54 dependent transcriptional regulator/sensory box protein n=1 Tax=Bermanella marisrubri RepID=Q1N5U9_9GAMM Length = 479 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 129/474 (27%), Positives = 203/474 (42%), Gaps = 54/474 (11%) Query: 78 EHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLIN------- 130 EH L LLE++ E V +D N A+ +L G + + L + + Sbjct: 13 EHQRL--LLESMSEGVYGLDENGLATFVNLAAERLTGWEANDLIGKSIHDFHHHSHADGR 70 Query: 131 -----GFNFLRWLESEPQDSHNEHV--VINGQNFLM--EITPVYLQDENDQHVLTGAVVM 181 + L+ + V +G +F + TP+ + + GA+V+ Sbjct: 71 HYPQADCPIYQCLQDGITRTKENEVFWRKDGTSFAVEYSATPIL-----QEGSIQGAIVV 125 Query: 182 LRSTIRMGRQLQNVAAQ----------------------DVSAFSQIVAVSPKMKHVVEQ 219 ++ R + + + S I+ SP ++H+ Q Sbjct: 126 FKNISERKRIESALQKALTENRFLKEKLEAENSYLQSEIESNYQSDIIGQSPAIEHLQTQ 185 Query: 220 AQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHA 279 A SA +LI G++GTGK+L A A HQ S R + + LNC +IPE V+SELFGH Sbjct: 186 ISLSAPTSANILIQGESGTGKELVARAIHQQSERQAQTLVKLNCGAIPEGLVDSELFGHE 245 Query: 280 PEG-------KKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVD 332 + G FE AN G++ LDE+ E+ Q KLLR L +G F RVG + + VD Sbjct: 246 KGAFTGAVKQRIGRFELANKGTLFLDEVSELPLDAQVKLLRVLQEGEFERVGGNKTIRVD 305 Query: 333 VRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQ 392 VR+I A+ KNL + V G FR DLYYRLNV ++ +PPLR+ D+ L+ F + + Sbjct: 306 VRIIAASNKNLEQAVHDGSFRLDLYYRLNVFSVQVPPLRERKSDLPILSHFFAKKACADM 365 Query: 393 GVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAV 452 G L ++ Y WPGN+R+L N I G + Sbjct: 366 GKSFKGLHMPSLKWMSHYQWPGNIRELSNWIEHNAILHTGGLFHIH--PMAHARHDHSVE 423 Query: 453 GEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 506 ++ SL E + + L A+ L + + + +K+++ G+ Sbjct: 424 HDNESIVSLAEAEKQHIQKALLHCNGRIAGANGAAQLLQLPASTLRSKMKKLGI 477 >UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=A7HIM1_ANADF Length = 495 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 138/420 (32%), Positives = 207/420 (49%), Gaps = 26/420 (6%) Query: 110 CQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDE 169 ++ + +L L E + +F+ + Sbjct: 80 LRMVPVDGIEVV-RRLRELDPDATVLVVSAHGTIAVAVEAMREGAIDFI--------EKP 130 Query: 170 NDQHVLTGAVVMLRSTIRMGRQLQNVAAQD--------VSAFSQIVAVSPKMKHVVEQAQ 221 VL V R + + A+ +V S M+ V++Q + Sbjct: 131 FSPDVLRARVEKSIEIARERKGARTARARAEALEEDLGRDRAHGLVGSSEPMRRVLDQVR 190 Query: 222 KLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE 281 K+A A +L+ G++GTGK+L A A H ASPR +P+++++CA+IPE +ESELFGH Sbjct: 191 KVASTGATVLVLGESGTGKELVARAIHDASPRREQPFVSISCAAIPEGLLESELFGHEKG 250 Query: 282 -------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVR 334 K G FE ANGG++ LDE+GE+ +Q KLLR L + F RVG + V VDVR Sbjct: 251 AFTGAIRRKLGRFELANGGTLFLDEVGEIPHAVQVKLLRVLQERQFERVGGEETVEVDVR 310 Query: 335 VICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGV 394 V+ AT +NL ++V+ G FREDLYYRLNV+ + LPPLRD P D+ L FVAR A Sbjct: 311 VVSATNRNLAQMVESGRFREDLYYRLNVVPILLPPLRDRPGDVEELARFFVARLAPRMSR 370 Query: 395 PRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGE 454 LA + +L R+ WPGNVR+L+N I +AL +G +RP+D+ A Sbjct: 371 AVTGLAPEALELLRRHRWPGNVRELENVIEQALVFAEGELVRPRDLPEGVRKAPPAPSLP 430 Query: 455 -DAMEGSLDEITSRFERSVLTQLYRN-YPSTRKLAKRLGVSHTAIANKLREYGLSQKKNE 512 + + SL +I ER ++ Y + A+ LG+ +A+ KL +YG+ + + Sbjct: 431 VPSGDRSLTDILEDLERQLILAAYEKARGVKAETARLLGIKPSALYYKLEKYGIVKAGEK 490 >UniRef50_B4D0Z8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0Z8_9BACT Length = 466 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 121/409 (29%), Positives = 202/409 (49%), Gaps = 26/409 (6%) Query: 112 LFGQKLDRLRN----HTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQ 167 + ++D++ +++ + + ++ E + + +++ Sbjct: 50 ITDLRMDKVGGLDILRECREVLPQTPVILITAYKTVETALEAMKLGAYDYIT-------- 101 Query: 168 DENDQHVLTGAVVMLRSTIRMGRQLQNVAA--QDVSAFSQIVAVSPKMKHVVEQAQKLAM 225 L + + R+ +N+ ++ F I+ S KM+ + K+A Sbjct: 102 KPFKVDELQLTIQRALDNQSLVRENRNLRQIVKEKYRFENIIGTSTKMQEIYNLIAKVAD 161 Query: 226 LSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPE---- 281 + +LI G++GTGK+L A A H S R +P++A+NC+++PE+ +ESELFGH Sbjct: 162 TDSTILIQGESGTGKELVARALHFNSTRQHQPFVAINCSALPENLLESELFGHKKGSFTG 221 Query: 282 ---GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICA 338 K G FE+A GG++ LDE+ M+ +Q KLLR L + RRVG+ V ++VRV+ A Sbjct: 222 AVQDKIGLFEEAEGGTIFLDEVNSMAQPLQTKLLRVLQERQIRRVGDTKSVPINVRVLAA 281 Query: 339 TQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPK 398 T + L + ++ G FREDLYYRL V+ + +P LR+ P DI L F+ + A + G K Sbjct: 282 TNEALGDKIKGGNFREDLYYRLAVIPVEMPALRERPDDIPLLVSHFLQKNAAQTGTEAKK 341 Query: 399 LAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAM- 457 + +L +Y WPGNVR+L+NA+ RA D +R D+ AT E + Sbjct: 342 IDPKAIEMLAKYRWPGNVRELENAVERACALCDDALIRTTDLPPQVIRHATAPPVEHSGT 401 Query: 458 ---EGSLDEITSRFERSVLTQLYRNYPSTR-KLAKRLGVSHTAIANKLR 502 +LDE ER + + + ++R K AK LG+S + KL Sbjct: 402 LPVGQTLDEYIREQERRYIEETIKFNGNSREKAAKMLGISMATLYRKLE 450 >UniRef50_C5EM87 Sigma54 specific transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EM87_9FIRM Length = 642 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 141/494 (28%), Positives = 241/494 (48%), Gaps = 29/494 (5%) Query: 33 IDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEP 92 I ++Y E E+ + + ++ + + ++ E L L A E + + Sbjct: 157 IKNGFKVYSGIIENSEEAIGRALNSAASL-----LKNMEYEANQMEFLRLLA--ENVTDG 209 Query: 93 VLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLIN--GFNFLRWLESEPQDSHNEHV 150 ++ VD + ++ +AN ++F + + + N+L+ + NE Sbjct: 210 LIFVDDRERIGIANANVGRIFPNRRP-VAGKGFQESFPFMAKNYLKACREKQ-HLDNEIY 267 Query: 151 VINGQNFLMEITPVYLQDENDQHVLT--GAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVA 208 N ++ TPV + E ++T + + ++ +L + FS I+ Sbjct: 268 RTRDMNIAVDFTPVMIGGEYKGMIITIHDIGRLQQREAQIRSKLNEMGLYAKYQFSDIIH 327 Query: 209 VSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPE 268 SP M+HV+E+A+K A +++ +LI G+TGTGK+L A + H AS R P++A+NCAS PE Sbjct: 328 QSPVMEHVIERAEKFAAVTSNVLIYGETGTGKELVAQSIHNASKRKSGPFVAINCASFPE 387 Query: 269 DAVESELFGHA--------PEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTF 320 + +ESELFG+ GK G FEQA+GG++ LDE+ E+ Q KLLR L + Sbjct: 388 NLLESELFGYEEGAFTGAVKGGKPGLFEQAHGGTLFLDEVSELPVSFQGKLLRVLQEREV 447 Query: 321 RRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPL 380 RRVG V +DVR+I AT KNL ++ G+FREDL YRL+VL L LPPLR +DI L Sbjct: 448 RRVGGKKVVKIDVRIIAATNKNLKQMTLDGLFREDLLYRLDVLNLPLPPLRKRREDIRLL 507 Query: 381 TELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDI 440 E ++ + ++ D T+L+ Y + GN+R+L+N + R ++ D+ Sbjct: 508 AEHYLMEYKEQFETCADHFTEDAMTLLSSYPFMGNIRELRNIVERISVTAQDTAVQVLDV 567 Query: 441 LL-------PDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYP-STRKLAKRLGV 492 VG + + ++ + +L + + ++A+RLG+ Sbjct: 568 EESLGLGEYDRQIQTAGQVGRIQDQAAAPAYIRNIQKEEIERLLKECGYNKSEVARRLGL 627 Query: 493 SHTAIANKLREYGL 506 + T + K+ + GL Sbjct: 628 NRTTLWRKMGKMGL 641 >UniRef50_B8G0V4 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8G0V4_DESHD Length = 657 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 125/448 (27%), Positives = 225/448 (50%), Gaps = 19/448 (4%) Query: 73 MPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGF 132 + S+ + + L EA E V+ +D K+ AN + + L++ +++ Sbjct: 214 LESDLKSELFNQLSEARNEAVIFIDSFGKIVDANQKFSKWVNVEKAELKDKELTEVLPEM 273 Query: 133 -NFLRWLESEPQDSHNEH----VVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIR 187 L LE+ + E + + Q M++ P+ + +TG +++L Sbjct: 274 QRILSCLETGKTITSEEIQLSKLPPHMQFVQMDVKPIESDKK-----ITGLIIILMDNKT 328 Query: 188 MGRQLQNVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYAC 247 +++ ++ Q F QI+ S ++ ++A A S+ ++++G++GTGK+LFA A Sbjct: 329 FRQRMSKISNQAYYTFDQIIGESGALQEAKQRAMNAACSSSNVILSGESGTGKELFAQAI 388 Query: 248 HQASPRAGKPYLALNCASIPEDAVESELFGHA--------PEGKKGFFEQANGGSVLLDE 299 H+ASPR P++++NCA+IP + + SELFG+ G G FE AN G++ LDE Sbjct: 389 HKASPRREGPFVSINCAAIPTELIASELFGYVEGAFTGARKGGSMGKFEYANTGTIFLDE 448 Query: 300 IGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYR 359 IGEM +Q LLR L + R+G + VDVR+ICAT +NL ++V+ G FR DLYYR Sbjct: 449 IGEMPLHIQTILLRVLEERRVNRIGSNIATPVDVRLICATNRNLHKMVKDGSFRLDLYYR 508 Query: 360 LNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQL 419 +NVL ++LPPLR+ DI + + ++ F ++A + L ++W GN+R+L Sbjct: 509 INVLHIHLPPLRERITDIPIIVDYYLDYFNRFLDKKVREVAPETMAFLINHSWEGNLREL 568 Query: 420 KNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFE-RSVLTQLYR 478 +N I + G L + + ++ + + + E + +L + + Sbjct: 569 RNTIECGINNAMGKTLELEHLPRYFFEKEEKMFDDREGSLGHESVYEFEEKKKMLALMIK 628 Query: 479 NYPSTRKLAKRLGVSHTAIANKLREYGL 506 + +A+ +G+S + + KL+ Y L Sbjct: 629 FNGNKSAVAEEIGISRSTLYRKLKSYNL 656 >UniRef50_Q1Q1B9 Strong similarity to sigma 54 response regulator protein n=3 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1B9_9BACT Length = 469 Score = 491 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 117/401 (29%), Positives = 201/401 (50%), Gaps = 18/401 (4%) Query: 129 INGFNFLRWLESEPQDSHNEHVVING-----QNFLMEITPVYLQDENDQHVLTGAVVMLR 183 +NG L +++E + + G + E Y+ + Sbjct: 62 VNGLEVLNAVKTENPATEVIVITAYGAISTAVQAIREGAYDYVTKPFRYQEMLKVAKNAL 121 Query: 184 STIRMGRQLQNVAA--QDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKD 241 + +L+ + ++ I+ S M V++ ++ + +LITG++GTGK+ Sbjct: 122 EKKELKERLKYLEGEVREKYKLEGIIGNSAVMVEVLKVTADVSRTESTVLITGESGTGKE 181 Query: 242 LFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPEG-------KKGFFEQANGGS 294 L A A H PR+G P++ +NC ++PE+ ESELFGHA K G F A+ G+ Sbjct: 182 LIARAIHYNGPRSGYPFVVINCGALPENLQESELFGHAKGSFTGAVKEKVGLFHHAHKGT 241 Query: 295 VLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFRE 354 + LDEIGE S Q KLLRFL DG R+VG + +HVDVR+I AT +NL V +G FR+ Sbjct: 242 IFLDEIGETSASTQVKLLRFLQDGEIRQVGGNKSIHVDVRIIAATNENLERAVNQGRFRK 301 Query: 355 DLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPG 414 DL+YR+NV+ ++LP L++ +DI L F+ + D+ + + VL Y WPG Sbjct: 302 DLFYRINVIRIHLPQLKERKEDIPLLVNYFLELYTDKLKKDKRVFSGSAMAVLLNYDWPG 361 Query: 415 NVRQLKNAIYRALTQLDGYELRPQDILLP---DYDAATVAVGEDAMEGSLDEITSRFERS 471 N+R+L+N + RA+ + + + LP + + ++ S+ E S E++ Sbjct: 362 NIRELQNIVERAVALSKNQVIGVEALPLPTGGFVAHNSNPERDVTVKSSIVETLSEQEKN 421 Query: 472 VL-TQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKKN 511 + + + + K+++ LG+S T + K+++Y + + Sbjct: 422 AIVEAMNKYGGNQTKVSQVLGISTTTLWRKIKKYKIKPQHE 462 >UniRef50_B5YHF3 Acetoacetate metabolism regulatory protein AtoC n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHF3_THEYD Length = 455 Score = 491 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 118/396 (29%), Positives = 193/396 (48%), Gaps = 18/396 (4%) Query: 123 HTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVML 182 + + + + + +++ L + Sbjct: 66 KHIKTISPQTGVIIITAFAEVKTAVQAIKDGAFDYIA--------KPFTNEELLLVIERF 117 Query: 183 RSTIRMGRQLQNVAA--QDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGK 240 + ++++ ++ + F IV+ S MK + ++ +A P+LI G++GTGK Sbjct: 118 LKFRTLEKEVKYLSELVKKKDEFEGIVSTSSVMKEIFDKIDAVAKTDVPVLIQGESGTGK 177 Query: 241 DLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPEG-------KKGFFEQANGG 293 +L A A + S R KPY+ +NCA+IPE ESELFG+ KKG FE ANGG Sbjct: 178 ELIANAIQKQSLRKEKPYIKINCAAIPETLFESELFGYEKGAFTGATETKKGKFELANGG 237 Query: 294 SVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFR 353 ++ DEIG+M +QAKLLR + DG R+G + ++VR I AT KNL EL++ FR Sbjct: 238 TIFFDEIGDMPLSLQAKLLRVIEDGIVYRLGGKEPIKINVRCIYATSKNLKELIKAEKFR 297 Query: 354 EDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWP 413 EDL+YR+NV+ + +PPL++ +DI L E F+ F+++ G ++ L Y +P Sbjct: 298 EDLFYRINVMPIAIPPLKERKEDIPVLIEKFLKIFSEKYGKQNITISPSAYEALLSYDYP 357 Query: 414 GNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERS-V 472 GNVR+LK+AI RAL + + + ++ SL E FE++ + Sbjct: 358 GNVRELKHAIERALLLSKDGVIDIKHLPEEFSPLSSFQKKCFISNFSLKECIENFEKNLI 417 Query: 473 LTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQ 508 + L + AK+LG+S A+ K++ YG+ Sbjct: 418 IKALQECGWKKTEAAKKLGISRKALWEKIKFYGIEP 453 >UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=B8FEY3_DESAA Length = 460 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 122/414 (29%), Positives = 207/414 (50%), Gaps = 26/414 (6%) Query: 112 LFGQKLDRLRNHTAAQLI----NGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQ 167 L K+ + + I L D + +++ Sbjct: 50 LTDMKMPGMDGMELMERIKTRDPDLPVLMMTAYGTVDMGMAAMEKGAYSYIW-------- 101 Query: 168 DENDQHVLTGAVVMLRSTIRMGRQLQNVAAQ--DVSAFSQIVAVSPKMKHVVEQAQKLAM 225 L V + R+ ++ + + + D +F I+ SP M ++ + K+A Sbjct: 102 KPFQNEQLILFVKQALAMYRVVQENRLLKNELGDRYSFGNIIGKSPAMVNIFDTIVKVAP 161 Query: 226 LSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPEG--- 282 +A +LI G++GTGK++ A + H S R P++A+NCA++ E +ESELFGH Sbjct: 162 TNATVLIQGESGTGKEMVAKSIHFNSHRKDAPWVAVNCAALAESILESELFGHEKGAFTG 221 Query: 283 ----KKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICA 338 KKG FE A+GG++ LDEIGE+S +Q KLLR L + TF RVG + VD+R+I A Sbjct: 222 AAAMKKGRFELADGGTLFLDEIGEISSSLQVKLLRVLQEKTFERVGGVKPIEVDIRLIAA 281 Query: 339 TQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFAD--EQGVPR 396 T ++L + V+ FREDL+YRLNVL + LPPLR+ +DI L + F+ ++A Sbjct: 282 TNRDLKKEVENSAFREDLFYRLNVLPIQLPPLRERQKDIPLLVDHFLQKYASGPSGESRV 341 Query: 397 PKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGED- 455 K+ D++ + YAWPGNVR+L+N I RA+ + + D+ + + + + Sbjct: 342 RKVHPDVHRLFQEYAWPGNVRELENVIERAIILCNSDAISVNDLPRELTRSVSNTLHMEG 401 Query: 456 -AMEGSLDEITSRFERSVLTQL-YRNYPSTRKLAKRLGVSHTAIANKLREYGLS 507 ++ +L E S E++++ + + A+ LG+ + + K++++GL Sbjct: 402 IPVDATLYETLSMVEQAMIKRAMLMSDNVQSHAAQILGIGKSGLNQKIKKFGLD 455 >UniRef50_C0QBD4 Sigma-54 dependent sensory box histidine kinase/response regulator n=2 Tax=Deltaproteobacteria RepID=C0QBD4_DESAH Length = 599 Score = 491 bits (1264), Expect = e-137, Method: Composition-based stats. Identities = 131/496 (26%), Positives = 226/496 (45%), Gaps = 38/496 (7%) Query: 44 AELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVD 103 + + + + + ++ + L L+++ + + D V Sbjct: 107 PIVHRHGVEGVFSILHETTEMDRLKK-KVKYFQHLSYELDTLIDSSNDGLWICDGNGVVL 165 Query: 104 MANPASCQLFGQKLDRLRNHTAAQLINGFNF-----LRWLESEPQDSHNEHVVINGQNFL 158 N AS +L K + + Q++ L L++ + S + G+ Sbjct: 166 RLNAASERLNELKAEDMIGKCMTQIVAEGYINKSVTLDVLKTGKRTSIFQK-TRTGKKLF 224 Query: 159 MEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQD----VSAFS---------- 204 + TPV+ + + + VV R + + + Sbjct: 225 LTGTPVFDK---ETGKIFRVVVNERDITEITDLQAELKETEALNDRYKRDLLELQIEETE 281 Query: 205 --QIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALN 262 +++A S +++A KLA + + ++ G++GTGK + A H+ S RA +P + LN Sbjct: 282 SREVIARSANYVATIQKAVKLAHVDSTVVFLGESGTGKSILANLIHKHSARADEPLIKLN 341 Query: 263 CASIPEDAVESELFGHAPE--------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRF 314 C +IPE VESELFG+ GK G FE A+ G++ LDEIGE+ Q KLL F Sbjct: 342 CGAIPESLVESELFGYEKGAFTGAHKSGKPGKFEMADKGTLFLDEIGELPLSSQVKLLGF 401 Query: 315 LNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCP 374 L DGT RVG + +DVR+I AT ++L +++K +FR DLYYRLNV+ L +PPLR+ Sbjct: 402 LEDGTVCRVGGTVDRIIDVRIIAATNQDLKAMIEKNLFRRDLYYRLNVIPLAIPPLRERK 461 Query: 375 QDIMPLTELFVARFADEQG-VPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGY 433 + I+PL +V F+ + L ++++ L Y +PGNVR+L N R + Sbjct: 462 ECILPLLNHYVELFSKKYAMKRAVSLTSEVSDALVLYDYPGNVRELINICERLVVMSSKG 521 Query: 434 ELRPQDILLPDYDAATVAVGEDAM---EGSLDEITSRFERSVLTQLYRNYPSTRKLAKRL 490 + D+ + E + +L E+ R E+ VL + + + +K A+ L Sbjct: 522 CMAYTDLPASVLSSVGSGTCEQELWDSALTLQEMIERLEKKVLEKTMQTQGTQKKTAELL 581 Query: 491 GVSHTAIANKLREYGL 506 G++ + +A KL++Y L Sbjct: 582 GLNQSTVARKLKKYAL 597 Score = 46.5 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 24/158 (15%), Positives = 55/158 (34%), Gaps = 16/158 (10%) Query: 61 IAGVTDVRTVPWMPSEREHLAL------SALLEALPEPVLSVDMKSKVDMANPASCQLFG 114 + ++++ + E + AL L A+ + ++ D + +V ++N Q Sbjct: 2 CSMISELFQMEASSLEEKDGALSRGKIIDVFLNAISDAIIVFDTRFRVLISNERCQQTLA 61 Query: 115 QKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHV 174 L + T +L G + + + V ++F ++I P+ + Sbjct: 62 IFPGTLLDSTLPELSAG---VSTVIQTMAPLVDLVVERGKRHFSVDIHPIVHRHG----- 113 Query: 175 LTGAVVMLRSTIRMGRQLQNVA--AQDVSAFSQIVAVS 210 + G +L T M R + V ++ S Sbjct: 114 VEGVFSILHETTEMDRLKKKVKYFQHLSYELDTLIDSS 151 >UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Anaeromyxobacter RepID=B8JAZ2_ANAD2 Length = 481 Score = 491 bits (1264), Expect = e-137, Method: Composition-based stats. Identities = 126/400 (31%), Positives = 197/400 (49%), Gaps = 24/400 (6%) Query: 123 HTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDENDQHVLTGAVVML 182 Q + +S E + +FL + + V Sbjct: 92 RAVQQASPETQVIVMTAYGTIESAVEAIRRGAYDFLA--------KPFKESEVLLRVAKA 143 Query: 183 RSTIRMGRQLQ--NVAAQDVSAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGK 240 R+ ++ + IV SP M+ V+++ ++A A +L+TG++GTGK Sbjct: 144 LEKRRLLGEVNLFAEEFRKRYGLEHIVGRSPAMREVLDRVLRVAPTDATVLVTGESGTGK 203 Query: 241 DLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGHAPEG-------KKGFFEQANGG 293 +L A A H S R+ KP++ +NCA+I + +ESELFGHA ++G FE+ANGG Sbjct: 204 ELVARALHVTSRRSDKPFVPVNCAAITDTLLESELFGHARGAFTGATRARRGMFEEANGG 263 Query: 294 SVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFR 353 ++ +DEIGE SP QAKLLR L +G RRVGE V V+VR+I AT ++L + + FR Sbjct: 264 TLFIDEIGETSPGFQAKLLRALQEGEIRRVGESSPVQVNVRIIAATNQDLRRAIAERRFR 323 Query: 354 EDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWP 413 EDL+YRLNV+ L +PPLR+ +D+ L F+ RF G R L + L + WP Sbjct: 324 EDLFYRLNVVPLRIPPLRERREDVPLLAAHFLQRFVQRTGSERV-LTPEAVASLVAHDWP 382 Query: 414 GNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVL 473 GNVR+L+N I +A G E+R D+ + +L + ER + Sbjct: 383 GNVRELENIIEQAAALCTGREIRAADVQIEARA-----APAGGAGVTLADAVEDTERRAI 437 Query: 474 TQLYRNYPS-TRKLAKRLGVSHTAIANKLREYGLSQKKNE 512 T + ++A+ LG+S T + K++ G+ +++ Sbjct: 438 TAALARCGNDLGRVARDLGISGTTLWRKMKRLGIEAREHP 477 >UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LFQ8_HALO1 Length = 515 Score = 490 bits (1263), Expect = e-137, Method: Composition-based stats. Identities = 127/444 (28%), Positives = 208/444 (46%), Gaps = 40/444 (9%) Query: 102 VDMANPASCQLFGQKLDRLRNH----TAAQLINGFNFLRWLESEPQDSHNEHVVINGQNF 157 + N + + Q++ R+ AA++ + D + + + GQ + Sbjct: 44 ILRDNEVAVIVTDQRMPRMTGLELLLKAAEIQPDAVGIILTAYTDLDVLVDAINL-GQIY 102 Query: 158 LMEITPVYLQDENDQHVLTGAVVM---LRSTIRMGRQLQNVAA------QDVSAFSQIVA 208 P + + + +LT A+ LR R+ QL+ F I+ Sbjct: 103 RYVTKP--WEAKELRGILTHALERYALLRENQRLMAQLREYTGYLNQEIHGAFDFGNIIG 160 Query: 209 VSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPE 268 S + V+ + +++A ++ +L+ G+TGTGK+L A+A H S R +P++ +NCA++ Sbjct: 161 DSAALGEVLSKVEQVAPTNSTVLLRGETGTGKELVAHAIHINSSRENQPFVRVNCAALAP 220 Query: 269 DAVESELFGHAPEG-------KKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFR 321 +ESELFGH + G FE A+GG++ LDE G++ +Q KLLR L + F Sbjct: 221 GVLESELFGHEKGAFTGAVAQRPGRFELADGGTLFLDECGDLPMEVQIKLLRALQEREFE 280 Query: 322 RVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLT 381 RVG + VDVRVI AT ++L +++ G FREDLYYRLNV ++LPPLRD +D+ L Sbjct: 281 RVGGTQTIKVDVRVISATNRDLEAMIEAGSFREDLYYRLNVFPIHLPPLRDRLEDLPALV 340 Query: 382 ELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDIL 441 F+A+FA P + L Y WPGNVR+L+N I RA+ G EL + Sbjct: 341 AHFIAKFARSGMTRTPGVRGAALDKLRSYTWPGNVRELENIIERAMILARGRELDADHLD 400 Query: 442 LPDYDAATVAVGEDA----------------MEGSLDEITSRFE-RSVLTQLYRNYPSTR 484 V L E E R ++ + ++ + Sbjct: 401 FGRRAQNATPVSGTPSVISETASHSPPLIGDESKPLAERLLDSERREIIAAVEKSNNNIA 460 Query: 485 KLAKRLGVSHTAIANKLREYGLSQ 508 A+ LG++ + + ++R++GL Sbjct: 461 SAARMLGINRSTLYYRMRKHGLEH 484 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.313 0.188 0.674 Lambda K H 0.267 0.0574 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,983,586,676 Number of Sequences: 3077464 Number of extensions: 262733090 Number of successful extensions: 705437 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 14214 Number of HSP's successfully gapped in prelim test: 6008 Number of HSP's that attempted gapping in prelim test: 658732 Number of HSP's gapped (non-prelim): 34276 length of query: 513 length of database: 1,040,396,356 effective HSP length: 133 effective length of query: 380 effective length of database: 631,093,644 effective search space: 239815584720 effective search space used: 239815584720 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.9 bits) S2: 97 (41.5 bits)