16/01/2012 08:49:24 : INFO  : Run start: Mon Jan 16 08:49:22 GMT 2012
16/01/2012 08:49:34 : INFO  : Initialised job
16/01/2012 08:49:37 : INFO  : Renaming log file 'phyre2_20120116_084920.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/74ac3b25541de69b/phyre_20120116_084920.log'
16/01/2012 08:49:40 : INFO  : Initialised job:
Sequence
>batch____
MALAMKVISQVEAQRKILEEAVSTALELASGKSDGAEVAVSKTTGISVSTRYGEVENVEF
NSDGALGITVYHQNRKGSASSTDLSPQAIARTVQAALDIARYTSPDPCAGVADKELLAFD
APDLDLFHPAEVSPDEAIELAARAEQAALQADKRITNTEGGSFNSHYGVKVFGNSHGMLQ
GYCSTRHSLSSCVIAEENGDMERDYAYTIGRAMSDLQTPEWVGADCARRTLSRLSPRKLS
TMKAPVIFANEVATGLFGHLVGAIAGGSVYRKSTFLLDSLGKQILPDWLTIEEHPHLLKG
LASTPFDSEGVRTERRDIIKDGILTQWLLTSYSARKLGLKSTGHAGGIHNWRIAGQGLSF
EQMLKEMGTGLVVTELMGQGVSAITGDYSRGAAGFWVENGEIQYPVSEITIAGNLKDMWR
NIVTVGNDIETRSNIQCGSVLLPEMKIAGQ

16/01/2012 08:49:42 : INFO  : Checked sequence
16/01/2012 08:49:47 : INFO  : Finding homologues with PSI-BLAST
16/01/2012 08:49:50 : INFO  : PSI-BLAST 3 iterations
16/01/2012 08:51:49 : INFO  : PSI-BLAST 5 iterations
16/01/2012 08:53:11 : INFO  : Finished PSI-BLAST
16/01/2012 08:53:15 : INFO  : Running Buildali to generate a3m file
16/01/2012 09:03:14 : INFO  : Converting to HMM
16/01/2012 09:03:19 : INFO  : Calibrating HMM
16/01/2012 09:03:43 : INFO  : Searching HMM database
16/01/2012 09:11:28 : INFO  : Finished buildali
16/01/2012 09:11:31 : INFO  : Predicting secondary structure
16/01/2012 09:11:46 : INFO  : Predicted secondary structure (PSI-Pred)
16/01/2012 09:11:50 : INFO  : Predicting Disordered regions
16/01/2012 09:11:58 : INFO  : Predicted Disorder (Disopred)
16/01/2012 09:12:01 : INFO  : Running memsat_svm check
16/01/2012 09:18:02 : INFO  : Globular protein
16/01/2012 09:18:04 : INFO  : Predicted Transmembrane (memsat_svm) ID '74ac3b25541de69b'
16/01/2012 09:18:07 : INFO  : Initialising fold library search
16/01/2012 09:18:13 : INFO  : Initialised search input
16/01/2012 09:18:17 : INFO  : Building Ensemble models
16/01/2012 09:18:23 : INFO  : Building hh.c3qtdC_.model.1.pdb
16/01/2012 09:18:52 : INFO  : Building c3qtdC_.1.pdb
16/01/2012 09:19:22 : INFO  : Building d1vpba_.2.pdb
16/01/2012 09:19:53 : INFO  : Building d1vl4a_.3.pdb
16/01/2012 09:20:23 : INFO  : Building c3onrI_.4.pdb
16/01/2012 09:20:51 : INFO  : Building d1o12a1.5.pdb
16/01/2012 09:21:26 : INFO  : Building d2ux9a1.6.pdb
16/01/2012 09:21:55 : INFO  : Building c2vxaL_.7.pdb
16/01/2012 09:22:25 : INFO  : Building c3oqtP_.8.pdb
16/01/2012 09:22:55 : INFO  : Building c3gknA_.9.pdb
16/01/2012 09:23:24 : INFO  : Building d1xaca_.10.pdb
16/01/2012 09:23:54 : INFO  : Building d2pjua1.11.pdb
16/01/2012 09:24:26 : INFO  : Building c2d1cB_.12.pdb
16/01/2012 09:24:56 : INFO  : Building d1pb1a_.13.pdb
16/01/2012 09:25:26 : INFO  : Building c3ixrA_.14.pdb
16/01/2012 09:25:56 : INFO  : Building c2iv0A_.15.pdb
16/01/2012 09:26:24 : INFO  : Building d1w0da_.16.pdb
16/01/2012 09:26:53 : INFO  : Building d1hqsa_.17.pdb
16/01/2012 09:27:23 : INFO  : Building d1jjga_.18.pdb
16/01/2012 09:27:53 : INFO  : Building d1n8ja_.19.pdb
16/01/2012 09:28:22 : INFO  : Building c3blxM_.20.pdb
16/01/2012 09:29:27 : INFO  : Finished HH model building
16/01/2012 09:29:30 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
16/01/2012 09:30:40 : INFO  : html domain output complete ID '74ac3b25541de69b'
16/01/2012 10:05:53 : INFO  : Run end  : Mon Jan 16 10:05:51 GMT 2012
