Phyre 2 alignment of P0AFK0 with c3mhsE_

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Job Description | P0AFK0
Confidence | 5.86% | Date | Thu Jan 5 11:26:33 GMT 2012
Rank | 29 | Aligned Residues | 39
% Identity | 15% | Template | c3mhsE_
PDB info | PDB header:hydrolase/transcription regulator/protei | Chain: E: PDB Molecule:saga-associated factor 73; | PDBTitle: structure of the saga ubp8/sgf11/sus1/sgf73 dub module bound to2 ubiquitin aldehyde
Resolution | 1.89 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 282 | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | K | Q | I | L | P | D | W | L | T | I | E | E | H | P | H | L | L | K | G | L | A | S | T | P | F | D | S | E | G | V | R | T | E | R | R | D | I | I | K | D
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | K | K | Y | F | N | P | N | A | Q | L | I | E | D | P | L | D | K | . | P | I | Q | Y | R | V | C | E | K | C | G | K | P | L | A | L | T | A | I | V | D | H
Template Known Secondary structure |  |  |  |  | S |  | T | T |  |  |  |  | S | S | T | T | S | S | . | S |  |  |  |  |  |  | T | T | T |  |  |  |  |  | G | G | G | T | T | T |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 55 | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . |  | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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