BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (204 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0ACZ6 Positive transcription regulator evgA n=68 Tax=E... 417 e-115 UniRef50_Q9RLW5 Virulence protein A n=1 Tax=Klebsiella pneumonia... 194 2e-48 UniRef50_Q9RLW2 Virulence protein R n=3 Tax=Enterobacteriaceae R... 193 3e-48 UniRef50_C4UE15 Positive transcription regulator evgA n=1 Tax=Ye... 180 2e-44 UniRef50_C4K7T4 Putative transcriptional regulator, response reg... 161 1e-38 UniRef50_C9P7J6 Two component transcriptional regulator LuxR fam... 160 3e-38 UniRef50_Q3K943 Putative LuxR family response regulator n=4 Tax=... 142 6e-33 UniRef50_A4TJY3 Two-component response regulator n=27 Tax=Yersin... 142 8e-33 UniRef50_P0A4H3 Virulence factors putative positive transcriptio... 142 9e-33 UniRef50_C9P7K7 Two component transcriptional regulator LuxR fam... 135 1e-30 UniRef50_B2JQA9 Two component transcriptional regulator, LuxR fa... 134 1e-30 UniRef50_Q46SR4 Two component transcriptional regulator, LuxR fa... 134 2e-30 UniRef50_Q88HE8 DNA-binding response regulator, LuxR family n=5 ... 134 2e-30 UniRef50_B1T1G9 Two component transcriptional regulator, LuxR fa... 130 2e-29 UniRef50_Q4KCH2 DNA-binding response regulator, LuxR family n=1 ... 129 9e-29 UniRef50_A4SH97 Two-component system response regulator n=4 Tax=... 128 1e-28 UniRef50_P0AEL9 Fimbriae Z protein n=80 Tax=Enterobacteriaceae R... 125 1e-27 UniRef50_A6AYG5 Response regulator VbsA n=11 Tax=Vibrio RepID=A6... 122 1e-26 UniRef50_B8G137 Two component transcriptional regulator, LuxR fa... 120 2e-26 UniRef50_A1HU08 Two component transcriptional regulator, LuxR fa... 120 2e-26 UniRef50_C4TR02 Histidine kinase n=1 Tax=Yersinia kristensenii A... 116 5e-25 UniRef50_C4ZEG3 Two-component response regulator (Extracellular ... 114 2e-24 UniRef50_Q3KF50 Putative LuxR family Two Component Transcription... 114 3e-24 UniRef50_A4SZV7 Two component transcriptional regulator, LuxR fa... 113 3e-24 UniRef50_C9QEV1 Response regulator VbsA n=2 Tax=Vibrio RepID=C9Q... 113 4e-24 UniRef50_C9PHC4 Putative fimbrial protein Z transcriptional regu... 112 1e-23 UniRef50_B1FBA4 Two component transcriptional regulator, LuxR fa... 109 5e-23 UniRef50_A8VTE0 Response regulator receiver protein n=1 Tax=Baci... 109 5e-23 UniRef50_Q5ZS73 Response regulator GacA n=10 Tax=Gammaproteobact... 107 3e-22 UniRef50_Q1QVM5 Two component transcriptional regulator, LuxR fa... 107 3e-22 UniRef50_UPI00016A3B5F transcriptional regulator FimZ n=1 Tax=Bu... 107 4e-22 UniRef50_Q07TZ6 Two component transcriptional regulator, LuxR fa... 106 4e-22 UniRef50_B8GSX5 Response regulator receiver protein n=2 Tax=Ecto... 106 5e-22 UniRef50_C9QDP7 DNA-binding response regulator LuxR family n=2 T... 106 5e-22 UniRef50_Q1LEP5 Two component transcriptional regulator, LuxR fa... 106 6e-22 UniRef50_B8FFJ9 Two component transcriptional regulator, LuxR fa... 105 6e-22 UniRef50_B1M5J4 Two component transcriptional regulator, LuxR fa... 105 8e-22 UniRef50_Q1LR81 Two component transcriptional regulator, LuxR fa... 105 1e-21 UniRef50_B2JQB0 Two component transcriptional regulator, LuxR fa... 104 2e-21 UniRef50_B4VFW8 Two-component system response regulator n=2 Tax=... 104 2e-21 UniRef50_B2STP5 Transcriptional regulator LuxR/uhpA family n=22 ... 104 2e-21 UniRef50_A5WFD3 Two component transcriptional regulator, LuxR fa... 104 2e-21 UniRef50_A7HA46 Two component transcriptional regulator, LuxR fa... 102 5e-21 UniRef50_C0QFU8 TRAP-type C4-dicarboxylate transporter, periplas... 102 6e-21 UniRef50_A3D3Y4 Two component transcriptional regulator, LuxR fa... 102 8e-21 UniRef50_C1ZGK9 Response regulator containing a CheY-like receiv... 102 8e-21 UniRef50_C9QJS3 Putative two-component response regulator n=1 Ta... 102 8e-21 UniRef50_D0LYS4 Two component transcriptional regulator, LuxR fa... 102 9e-21 UniRef50_C5T9P3 Two component transcriptional regulator, LuxR fa... 102 1e-20 UniRef50_D1B9T1 Two component transcriptional regulator, LuxR fa... 101 1e-20 UniRef50_B8GAC9 Two component transcriptional regulator, LuxR fa... 101 1e-20 UniRef50_C0N7Q7 Sigma-70, region 4 family n=1 Tax=Methylophaga t... 101 2e-20 UniRef50_Q01NH5 Two component transcriptional regulator, LuxR fa... 100 2e-20 UniRef50_A1ASJ5 Two component transcriptional regulator, LuxR fa... 100 2e-20 UniRef50_A0L9F1 Two component transcriptional regulator, LuxR fa... 100 2e-20 UniRef50_Q3A5X6 Transcriptional regulator, LuxR family n=2 Tax=P... 100 3e-20 UniRef50_A5FAZ3 Two component transcriptional regulator, LuxR fa... 100 4e-20 UniRef50_A2SCN0 Two-component response regulator n=1 Tax=Methyli... 100 4e-20 UniRef50_B8IGH6 Two component transcriptional regulator, LuxR fa... 100 5e-20 UniRef50_C0N6H7 Response regulator receiver domain protein n=1 T... 100 5e-20 UniRef50_Q11VH7 Response regulator n=1 Tax=Cytophaga hutchinsoni... 100 5e-20 UniRef50_A3HVU5 Transcriptional regulator n=1 Tax=Algoriphagus s... 100 5e-20 UniRef50_D1Y661 DNA-binding response regulator, LuxR family n=1 ... 99 6e-20 UniRef50_Q3JFS6 DNA-binding response regulator, LuxR family n=92... 99 7e-20 UniRef50_A1TVD4 Two component transcriptional regulator, LuxR fa... 99 8e-20 UniRef50_A3U840 DNA-binding response regulator, LuxR family prot... 99 8e-20 UniRef50_D1U8L0 Two component transcriptional regulator, LuxR fa... 99 8e-20 UniRef50_A6GFX0 Two component transcriptional regulator, LuxR fa... 99 8e-20 UniRef50_B4D6Y1 Two component transcriptional regulator, LuxR fa... 99 9e-20 UniRef50_A4CPM8 Regulatory protein, LuxR:Response regulator rece... 99 9e-20 UniRef50_D2R948 Two component transcriptional regulator, LuxR fa... 99 1e-19 UniRef50_B4T4T3 EsrB n=38 Tax=Enterobacteriaceae RepID=B4T4T3_SALNS 98 1e-19 UniRef50_A1WBJ7 Two component transcriptional regulator, LuxR fa... 98 1e-19 UniRef50_B0MVU6 Putative uncharacterized protein n=1 Tax=Alistip... 98 2e-19 UniRef50_B7AAT6 Two component transcriptional regulator, LuxR fa... 98 2e-19 UniRef50_D2BDI1 Response regulator receiver protein n=8 Tax=Acti... 98 2e-19 UniRef50_A1K960 Probable transcriptional regulator, LuxR family ... 98 2e-19 UniRef50_Q5HLK6 Oxygen regulatory protein nreC n=71 Tax=Firmicut... 98 2e-19 UniRef50_B7GL14 DNA-binding response regulator, NarL family (REC... 98 2e-19 UniRef50_C6VZM4 Two component transcriptional regulator, LuxR fa... 98 2e-19 UniRef50_Q023R1 Two component transcriptional regulator, LuxR fa... 97 2e-19 UniRef50_B3PFS2 GacA n=1 Tax=Cellvibrio japonicus Ueda107 RepID=... 97 2e-19 UniRef50_Q04VJ6 Receiver component of a two-component response r... 97 3e-19 UniRef50_Q13QW9 Two component transcriptional regulator, LuxR fa... 97 3e-19 UniRef50_B2UG05 Two component transcriptional regulator, LuxR fa... 97 3e-19 UniRef50_A6W0B9 Two component transcriptional regulator, LuxR fa... 97 4e-19 UniRef50_A3XI64 DNA-binding response regulator, LuxR family prot... 97 4e-19 UniRef50_Q01NJ8 Two component transcriptional regulator, LuxR fa... 97 4e-19 UniRef50_UPI000182725E putative two-component response regulator... 97 4e-19 UniRef50_A9FM25 DNA-binding response regulator n=1 Tax=Sorangium... 97 4e-19 UniRef50_A0M543 Two-component system response regulator n=3 Tax=... 97 5e-19 UniRef50_P44845 Nitrate/nitrite response regulator protein homol... 97 5e-19 UniRef50_A1WT06 Two component transcriptional regulator, LuxR fa... 96 5e-19 UniRef50_B5JUM2 Two component transcriptional regulator, LuxR fa... 96 5e-19 UniRef50_Q39C19 Two component transcriptional regulator, LuxR fa... 96 5e-19 UniRef50_B1Y743 Two component transcriptional regulator, LuxR fa... 96 5e-19 UniRef50_C9QGW5 Putative two-component response regulator n=1 Ta... 96 7e-19 UniRef50_A8UE45 Two component transcriptional regulator, LuxR fa... 96 8e-19 UniRef50_B9L0W5 Nitrate/nitrite response regulator protein n=1 T... 96 9e-19 UniRef50_Q12FM5 Two component transcriptional regulator, LuxR fa... 96 9e-19 UniRef50_A3HV51 Two-component response regulator n=1 Tax=Algorip... 96 9e-19 UniRef50_Q024Y7 Two component transcriptional regulator, LuxR fa... 96 1e-18 UniRef50_B1ZT64 Two component transcriptional regulator, LuxR fa... 96 1e-18 UniRef50_B6JD38 Two component transcriptional regulator, LuxR fa... 95 1e-18 UniRef50_A9DM99 Transcriptional regulator, LuxR family protein n... 95 1e-18 UniRef50_A1SKW0 Two component transcriptional regulator, LuxR fa... 95 1e-18 UniRef50_Q2BNZ3 Transcriptional regulator, LuxR family protein n... 95 1e-18 UniRef50_C4SW04 Response regulator containing a CheY-like receiv... 95 1e-18 UniRef50_B1Y1Z3 Two component transcriptional regulator, LuxR fa... 95 2e-18 UniRef50_B1WQK4 Two-component response regulator n=19 Tax=Cyanob... 95 2e-18 UniRef50_B9XAW3 Two component transcriptional regulator, LuxR fa... 95 2e-18 UniRef50_A0R9S0 DNA-binding response regulator n=37 Tax=Bacillus... 95 2e-18 UniRef50_B8CZJ8 Two component transcriptional regulator, LuxR fa... 94 2e-18 UniRef50_B9XL75 Two component transcriptional regulator, LuxR fa... 94 2e-18 UniRef50_Q07MS7 Two component transcriptional regulator, LuxR fa... 94 2e-18 UniRef50_Q5NZZ3 Two-component system response regulator n=3 Tax=... 94 3e-18 UniRef50_A0LVS2 Two component transcriptional regulator, LuxR fa... 94 3e-18 UniRef50_C3BGJ6 Two component transcriptional regulator, LuxR n=... 94 3e-18 UniRef50_C7LQH4 Two component transcriptional regulator, LuxR fa... 94 3e-18 UniRef50_B8IYZ1 Two component transcriptional regulator, LuxR fa... 94 3e-18 UniRef50_A7N4M7 Putative uncharacterized protein n=11 Tax=Vibrio... 94 3e-18 UniRef50_C9LUT0 DNA-binding response regulator UhpA n=1 Tax=Sele... 94 4e-18 UniRef50_C0BG71 Two component transcriptional regulator, LuxR fa... 94 4e-18 UniRef50_Q485W6 DNA-binding response regulator n=3 Tax=Alteromon... 94 4e-18 UniRef50_Q67JS2 Two-component response regulator n=1 Tax=Symbiob... 93 4e-18 UniRef50_D0L1Q4 Two component transcriptional regulator, LuxR fa... 93 4e-18 UniRef50_Q1IXN1 Two component transcriptional regulator, LuxR fa... 93 5e-18 UniRef50_C6BTX3 Two component transcriptional regulator, LuxR fa... 93 5e-18 UniRef50_B8FDP3 Two component transcriptional regulator, LuxR fa... 93 5e-18 UniRef50_D1AAU8 Two component transcriptional regulator, LuxR fa... 93 6e-18 UniRef50_Q0EZ33 Regulatory protein, LuxR:Response regulator rece... 93 6e-18 UniRef50_Q1YTG7 Regulatory protein, LuxR:Response regulator rece... 93 6e-18 UniRef50_A8GBA0 Two component transcriptional regulator, LuxR fa... 93 6e-18 UniRef50_C5V5K1 Two component transcriptional regulator, LuxR fa... 93 6e-18 UniRef50_Q1H354 Two component transcriptional regulator, LuxR fa... 93 7e-18 UniRef50_Q1H353 Two component transcriptional regulator, LuxR fa... 93 7e-18 UniRef50_A0NNP3 Response regulator containing a CheY-like receiv... 93 7e-18 UniRef50_C6VTD0 Two component transcriptional regulator, LuxR fa... 92 7e-18 UniRef50_B9QSJ5 Response regulator receiver domain protein n=1 T... 92 7e-18 UniRef50_Q2RYV1 Two-component response regulator n=1 Tax=Salinib... 92 8e-18 UniRef50_B8CN77 Nitrate/nitrite DNA-binding response regulator, ... 92 8e-18 UniRef50_B4D2X8 Two component transcriptional regulator, LuxR fa... 92 9e-18 UniRef50_Q11YW8 Two component transcriptional regulator, LuxR fa... 92 9e-18 UniRef50_C1TL62 Response regulator containing a CheY-like receiv... 92 9e-18 UniRef50_Q1GIA7 Two component transcriptional regulator, LuxR fa... 92 9e-18 UniRef50_C7RMN3 Two component transcriptional regulator, LuxR fa... 92 1e-17 UniRef50_C4L5Q6 Two component transcriptional regulator, LuxR fa... 92 1e-17 UniRef50_A6M052 Two component transcriptional regulator, LuxR fa... 92 1e-17 UniRef50_B0SY65 Two component transcriptional regulator, LuxR fa... 92 1e-17 UniRef50_C2C4B6 Transcriptional regulator n=1 Tax=Listeria grayi... 92 1e-17 UniRef50_Q98DH9 Two-component system response regulator n=1 Tax=... 92 1e-17 UniRef50_B9L1R6 Response regulator uvrY n=1 Tax=Thermomicrobium ... 92 1e-17 UniRef50_C7NKN7 Response regulator containing a CheY-like receiv... 92 2e-17 UniRef50_UPI0001788591 two component transcriptional regulator, ... 91 2e-17 UniRef50_C0DXM6 Putative uncharacterized protein n=1 Tax=Eikenel... 91 2e-17 UniRef50_Q1J0X7 Two component transcriptional regulator, LuxR fa... 91 2e-17 UniRef50_UPI0001C314AF two component transcriptional regulator, ... 91 2e-17 UniRef50_C0ZDE8 Two-component response regulator n=7 Tax=Bacilla... 91 2e-17 UniRef50_B9XC41 Two component transcriptional regulator, LuxR fa... 91 2e-17 UniRef50_C6DD36 Two component transcriptional regulator, LuxR fa... 91 2e-17 UniRef50_A1ZEE6 Two-component response regulator n=2 Tax=Microsc... 91 2e-17 UniRef50_Q2RMH6 Two component transcriptional regulator, LuxR fa... 91 2e-17 UniRef50_Q5NZX4 Two-component response regulator n=3 Tax=Betapro... 91 2e-17 UniRef50_D2QGZ7 Two component transcriptional regulator, LuxR fa... 91 2e-17 UniRef50_Q48GV3 DNA-binding response regulator, LuxR family n=14... 91 3e-17 UniRef50_A7LKW1 Putative two component transcriptional regulator... 91 3e-17 UniRef50_D2R8T9 Two component transcriptional regulator, LuxR fa... 91 3e-17 UniRef50_B0TSG4 Two component transcriptional regulator, LuxR fa... 91 3e-17 UniRef50_C5B7B5 Nitrate/nitrite response regulator protein NarP ... 91 3e-17 UniRef50_C6C0G1 Two component transcriptional regulator, LuxR fa... 91 3e-17 UniRef50_B1ZP37 Two component transcriptional regulator, LuxR fa... 91 3e-17 UniRef50_Q0B0G6 Response regulator receiver protein n=1 Tax=Synt... 91 3e-17 UniRef50_B4D0S7 Two component transcriptional regulator, LuxR fa... 91 3e-17 UniRef50_Q51373 Response regulator gacA n=50 Tax=Gammaproteobact... 91 3e-17 UniRef50_B9L0H3 Transcriptional regulatory protein degU n=1 Tax=... 91 3e-17 UniRef50_C6C961 Two component transcriptional regulator, LuxR fa... 91 3e-17 UniRef50_A4XCA4 Response regulator receiver n=3 Tax=Actinomyceta... 90 4e-17 UniRef50_Q46VQ7 Regulatory protein, LuxR:Response regulator rece... 90 4e-17 UniRef50_P54662 Transcriptional regulatory protein degU n=24 Tax... 90 4e-17 UniRef50_C1A5E6 NarL family two-component response regulator n=1... 90 4e-17 UniRef50_C8QGG5 Two component transcriptional regulator, LuxR fa... 90 4e-17 UniRef50_B8CMA1 Response regulator containing a CheY-like receiv... 90 4e-17 UniRef50_C1TQ52 Response regulator containing a CheY-like receiv... 90 4e-17 UniRef50_Q1AVR6 Two component transcriptional regulator, LuxR fa... 90 4e-17 UniRef50_A8MF72 Two component transcriptional regulator, LuxR fa... 90 4e-17 UniRef50_B9XAQ5 Two component transcriptional regulator, LuxR fa... 90 5e-17 UniRef50_C6VST2 Two component transcriptional regulator, LuxR fa... 90 5e-17 UniRef50_B4DA09 Two component transcriptional regulator, LuxR fa... 90 5e-17 UniRef50_D2BGT0 DNA-binding response regulator, LuxR family n=5 ... 90 5e-17 UniRef50_A1ZFU2 Transcriptional regulator, LuxR family n=1 Tax=M... 90 5e-17 UniRef50_Q2W7M4 Response regulator n=3 Tax=Magnetospirillum RepI... 90 5e-17 UniRef50_B2JSN3 Two component transcriptional regulator, LuxR fa... 90 6e-17 UniRef50_C7PF69 Two component transcriptional regulator, LuxR fa... 89 6e-17 UniRef50_C6XAP6 Two component transcriptional regulator, LuxR fa... 89 6e-17 UniRef50_Q9RU37 DNA-binding response regulator n=3 Tax=Deinococc... 89 7e-17 UniRef50_Q1GZT3 Two component transcriptional regulator, LuxR fa... 89 7e-17 UniRef50_Q1D626 DNA-binding response regulator, LuxR family n=2 ... 89 8e-17 UniRef50_C4ZL17 Two component transcriptional regulator, LuxR fa... 89 8e-17 UniRef50_C1SMK1 Response regulator containing a CheY-like receiv... 89 8e-17 UniRef50_D1XLE6 Two component transcriptional regulator, LuxR fa... 89 8e-17 UniRef50_D2Q428 Two component transcriptional regulator, LuxR fa... 89 9e-17 UniRef50_C1TRD8 Response regulator containing a CheY-like receiv... 89 9e-17 UniRef50_C7QHJ1 Two component transcriptional regulator, LuxR fa... 89 9e-17 UniRef50_C8WS10 Two component transcriptional regulator, LuxR fa... 89 1e-16 UniRef50_C7RBI1 Two component transcriptional regulator, LuxR fa... 89 1e-16 UniRef50_B4CVL8 Two component transcriptional regulator, LuxR fa... 89 1e-16 UniRef50_B1ZI39 Two component transcriptional regulator, LuxR fa... 89 1e-16 UniRef50_A6BYP5 Response regulator receiver domain protein n=1 T... 89 1e-16 UniRef50_C9PHC7 Putative two-component response regulator n=1 Ta... 89 1e-16 UniRef50_Q09C30 Two-component system regulatory protein n=3 Tax=... 89 1e-16 UniRef50_A6Q7X9 Two-component response regulator n=1 Tax=Sulfuro... 88 1e-16 UniRef50_A5FMH2 Two component transcriptional regulator, LuxR fa... 88 1e-16 UniRef50_C1TL94 Response regulator containing a CheY-like receiv... 88 1e-16 UniRef50_B1Y741 Two component transcriptional regulator, LuxR fa... 88 2e-16 UniRef50_B4X460 Response regulator receiver domain protein n=1 T... 88 2e-16 UniRef50_A3YAJ1 Two-component system regulatory protein n=1 Tax=... 88 2e-16 UniRef50_B4EY67 Nitrate/nitrite response regulator n=9 Tax=Enter... 88 2e-16 UniRef50_A1K2Y1 DNA-binding response regulator n=7 Tax=Betaprote... 88 2e-16 UniRef50_UPI00016C48EF two-component response regulator n=1 Tax=... 88 2e-16 UniRef50_C6VY14 Two component transcriptional regulator, LuxR fa... 88 2e-16 UniRef50_Q52376 Response regulator gacA n=286 Tax=Gammaproteobac... 88 2e-16 UniRef50_C5NV86 Oxygen regulatory protein NreC n=1 Tax=Gemella h... 88 2e-16 UniRef50_Q1NT91 Regulatory protein, LuxR:Response regulator rece... 88 2e-16 UniRef50_B1ZVR4 Two component transcriptional regulator, LuxR fa... 88 2e-16 UniRef50_Q483K5 DNA-binding response regulator, LuxR family n=1 ... 87 2e-16 UniRef50_C0GHS5 Two component transcriptional regulator, LuxR fa... 87 2e-16 UniRef50_Q3Z7M1 DNA-binding response regulator, LuxR family n=7 ... 87 2e-16 UniRef50_Q2RYV0 DNA-binding response regulator, LuxR family n=3 ... 87 2e-16 UniRef50_Q6AMC3 Related to two-component system response regulat... 87 3e-16 UniRef50_A9VYF8 Response regulator receiver n=5 Tax=Methylobacte... 87 3e-16 UniRef50_B8FX94 Two component transcriptional regulator, LuxR fa... 87 3e-16 UniRef50_Q47DK2 Two component transcriptional regulator, LuxR fa... 87 3e-16 UniRef50_Q39TN7 Two component transcriptional regulator, LuxR fa... 87 3e-16 UniRef50_Q475M9 Regulatory protein, LuxR:Response regulator rece... 87 3e-16 UniRef50_C5UZV9 Two component transcriptional regulator, LuxR fa... 87 3e-16 UniRef50_A5FAW2 Two component transcriptional regulator, LuxR fa... 87 3e-16 UniRef50_D1Y4N4 Two component transcriptional regulator, LuxR fa... 87 3e-16 UniRef50_A6WBE1 Two component transcriptional regulator, LuxR fa... 87 4e-16 UniRef50_Q67QY5 Two-component response regulator n=1 Tax=Symbiob... 87 4e-16 UniRef50_Q1LE49 Two component transcriptional regulator, LuxR fa... 87 4e-16 UniRef50_B2A6W2 Two component transcriptional regulator, LuxR fa... 87 4e-16 UniRef50_B9TGG7 Response regulator uvrY, putative n=1 Tax=Ricinu... 87 4e-16 UniRef50_B5D3J6 Putative uncharacterized protein n=1 Tax=Bactero... 87 4e-16 UniRef50_B9XQH4 Two component transcriptional regulator, LuxR fa... 87 5e-16 UniRef50_C4DI56 Response regulator containing a CheY-like receiv... 87 5e-16 UniRef50_C1I7X4 Two-component system response regulator n=1 Tax=... 86 5e-16 UniRef50_D1BCA8 Two component transcriptional regulator, LuxR fa... 86 5e-16 UniRef50_C6VXG6 Two component transcriptional regulator, LuxR fa... 86 6e-16 UniRef50_C1XKQ4 Two component transcriptional regulator, LuxR fa... 86 6e-16 UniRef50_C9M8B3 DNA-binding response regulator, LuxR family n=1 ... 86 6e-16 >UniRef50_P0ACZ6 Positive transcription regulator evgA n=68 Tax=Enterobacteriaceae RepID=EVGA_ECO57 Length = 204 Score = 417 bits (1071), Expect = e-115, Method: Compositional matrix adjust. Identities = 204/204 (100%), Positives = 204/204 (100%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG Sbjct: 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY Sbjct: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 Query: 121 CYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKS 180 CYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKS Sbjct: 121 CYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKS 180 Query: 181 RLMEKLECKSLMDLYTFAQRNKIG 204 RLMEKLECKSLMDLYTFAQRNKIG Sbjct: 181 RLMEKLECKSLMDLYTFAQRNKIG 204 >UniRef50_Q9RLW5 Virulence protein A n=1 Tax=Klebsiella pneumoniae RepID=Q9RLW5_KLEPN Length = 207 Score = 194 bits (492), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 101/205 (49%), Positives = 137/205 (66%), Gaps = 6/205 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 M+A+IIDDHP A A++ +L +I + E + A+Q V+ L+PDIVI+DV + G +G Sbjct: 8 MSAVIIDDHPFARLALKTVLENQNIVVTGEAADDFHAIQLVDRLQPDIVIVDVMLIGSSG 67 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 I V+ LR+ Y+G I++VS KN +FY K DAGAN F+SKKE M+N +AAI+A + GY Sbjct: 68 IDVVTKLRQNHYAGSIVMVSGKNQNFYRKCSVDAGANAFISKKESMDNFVAAIQAVQRGY 127 Query: 121 CYFPF-SLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 YFP S N T + K+ SLS+QEI +MRYI+ G N +IA +M I+ KTVSTYK Sbjct: 128 YYFPLPSYNP-----TPAENKILSLSEQEIKIMRYIVSGAPNQNIAAEMNINPKTVSTYK 182 Query: 180 SRLMEKLECKSLMDLYTFAQRNKIG 204 RLM KL CK+L DL+ F+ IG Sbjct: 183 RRLMGKLNCKTLKDLFVFSNNTNIG 207 >UniRef50_Q9RLW2 Virulence protein R n=3 Tax=Enterobacteriaceae RepID=Q9RLW2_KLEPN Length = 234 Score = 193 bits (491), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 96/203 (47%), Positives = 142/203 (69%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 ++ ++I+ +PL AI+ LL + + E G A++ V+ L+P+ +I+DVD+P ++G Sbjct: 25 ISVVLINRYPLESIAIKTLLENKGVSVTGEAINGMDALRIVDQLQPNTIIVDVDLPDIDG 84 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 I ++ETLRKR Y G II+ S K ++FY + A AG NGFVSKK +N I++A++AA NGY Sbjct: 85 IGLVETLRKRLYKGSIIVTSNKYEYFYSRCTASAGGNGFVSKKGSINIILSAVQAAHNGY 144 Query: 121 CYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKS 180 YFPFS +R G + KL +LS+QEI V+R++L+G N IA KM IS+KTVSTYKS Sbjct: 145 SYFPFSQHRVSGEGAYARNKLQALSEQEIIVLRHLLEGASNFHIAAKMDISSKTVSTYKS 204 Query: 181 RLMEKLECKSLMDLYTFAQRNKI 203 RLM+KL C++L++L FA + +I Sbjct: 205 RLMKKLNCQTLVELIGFANKFRI 227 >UniRef50_C4UE15 Positive transcription regulator evgA n=1 Tax=Yersinia aldovae ATCC 35236 RepID=C4UE15_YERAL Length = 215 Score = 180 bits (457), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 92/206 (44%), Positives = 139/206 (67%), Gaps = 4/206 (1%) Query: 2 NAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGI 61 N +I+DDHP+A A+R LL K+++ I+ E +G A+ + L PD +++D+DIP +NGI Sbjct: 9 NVLIVDDHPVARLAVRMLLEKDNMSIVGEADDGLKALSLAKELCPDFIVVDIDIPSLNGI 68 Query: 62 QVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 121 +++ LR R Y G I+++S K+D Y K CA AGA+GF+SK+ + A+ A K GY Sbjct: 69 DLVKCLRSRGYEGGILVLSGKDDEHYVKRCASAGADGFISKRNNLLGFTDAMRAIKGGYG 128 Query: 122 YFPFSLNRFV---GSLTSD-QQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 Y+P +R V GS+ + Q K+ +LS +E+ V+R+++ G DI+ KM IS+KTVST Sbjct: 129 YYPRDQSRKVAMSGSIEENGQSKISTLSDKELQVLRFLVKGIKVVDISVKMQISDKTVST 188 Query: 178 YKSRLMEKLECKSLMDLYTFAQRNKI 203 YK RLM KLE K++++LY F+QRN I Sbjct: 189 YKRRLMLKLELKNMVELYDFSQRNNI 214 >UniRef50_C4K7T4 Putative transcriptional regulator, response regulator receiver and GerE domains n=2 Tax=Enterobacteriaceae RepID=C4K7T4_HAMD5 Length = 207 Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 77/202 (38%), Positives = 134/202 (66%), Gaps = 2/202 (0%) Query: 4 IIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQV 63 +I+DDHP+A AIR LL K + ++ E+ +G A+Q+V+ PD++++D+DI +NGI + Sbjct: 5 LIVDDHPVARLAIRMLLEKENYTVVGEVDDGFKALQQVKQFNPDLILVDIDILSLNGIDL 64 Query: 64 LETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYF 123 + LR ++Y G I++++ K++ Y C AGA+GF+SK+ ++ + A+ + ++GY +F Sbjct: 65 VLRLRHQEYKGGILVLTGKDNAHYITRCKQAGADGFISKRNNLSELKNALRSIESGYSFF 124 Query: 124 PFSLNRFVGS--LTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKSR 181 P F S + + +++ LS +E+ V+ + G DIAE+M IS+KTVSTYKSR Sbjct: 125 PLQRAEFSDSKPFSDETDRINQLSTKELQVLSCLSKGMKILDIAEQMKISHKTVSTYKSR 184 Query: 182 LMEKLECKSLMDLYTFAQRNKI 203 +M KL+ +++DLY F+QR+ + Sbjct: 185 MMYKLQLNNMVDLYHFSQRHNL 206 >UniRef50_C9P7J6 Two component transcriptional regulator LuxR family n=1 Tax=Vibrio metschnikovii CIP 69.14 RepID=C9P7J6_VIBME Length = 202 Score = 160 bits (404), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 81/203 (39%), Positives = 127/203 (62%), Gaps = 4/203 (1%) Query: 2 NAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGI 61 N I++DDHP+ + A + +L KN+ ++AE G A+++++ +P IV+ID+ IP ++GI Sbjct: 3 NIILVDDHPIVLMAAKVILEKNNFSVVAEAKNGVEAIKKIKEYQPHIVVIDISIPLIDGI 62 Query: 62 QVLETLRKRQYSG-IIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 V+E + +++ S N HF C AGA G++SK+ G+ ++ A++A GY Sbjct: 63 SVIERCTAMGITTKFLVLTSQPNSHFVSL-CMQAGAYGYLSKETGLEELVTAMKAIAAGY 121 Query: 121 CYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKS 180 +FP + S DQ L LS +EI V Y++ G NN+IAEKM ISNKTVSTYK Sbjct: 122 KFFPDCVTHL--STVQDQNDLSILSAREIVVFNYLVSGLSNNEIAEKMLISNKTVSTYKK 179 Query: 181 RLMEKLECKSLMDLYTFAQRNKI 203 R+M+KL K+++DL + A+RN + Sbjct: 180 RIMDKLNAKNIVDLISIAKRNNV 202 >UniRef50_Q3K943 Putative LuxR family response regulator n=4 Tax=Gammaproteobacteria RepID=Q3K943_PSEPF Length = 208 Score = 142 bits (359), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 75/207 (36%), Positives = 129/207 (62%), Gaps = 4/207 (1%) Query: 1 MNAI-IIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 MN++ I+DDHP+ A+R LL +++ E G A+Q V PD++I+D+ IP ++ Sbjct: 1 MNSVFIVDDHPVIRLAVRMLLEHEGYKVVGETDNGVDAMQMVRECMPDLIILDISIPKLD 60 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++VL ++++A+ +G C +GA+G+V K+E ++ +++AI+A +G Sbjct: 61 GLEVLARFNAMSSPFKTLVLTAQCPTLFGIRCMQSGASGYVCKQEDLSELVSAIKAVLSG 120 Query: 120 YCYFPF-SLN--RFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 Y YFP +LN R ++ + S++ +E+ V++ G+ N +IA+ MF+SNKTVS Sbjct: 121 YNYFPSQALNPVRHDDVRYAELELFKSVNDRELMVLQLFAQGRTNKEIAKGMFLSNKTVS 180 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKI 203 TYK RLM+KL+ KSL++L A+RN + Sbjct: 181 TYKKRLMQKLKAKSLVELIEMAKRNAL 207 >UniRef50_A4TJY3 Two-component response regulator n=27 Tax=Yersinia RepID=A4TJY3_YERPP Length = 210 Score = 142 bits (357), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 73/204 (35%), Positives = 130/204 (63%), Gaps = 4/204 (1%) Query: 4 IIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +I+DDHP AI LL ++ + ++E +G A+++++ D+VIID+++P +G Sbjct: 6 MIVDDHPAIRVAIHALLSQSKEFSTISESVDGSEALEKLKNNPVDLVIIDIELPNFDGFS 65 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 +L+ L++R ++G + +SAKN+ + AGANGF+SK + ++ I+ A + GY + Sbjct: 66 LLKKLQQRGFTGKSLFLSAKNEQVFAVRALQAGANGFISKNKDISEILFAAQNVLRGYSF 125 Query: 123 FPF-SLNRFVGSLTSDQ--QKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 FP +L + G +S + LS++EI+V+RY+++G N IA++MFISNKTVSTYK Sbjct: 126 FPSETLTQLAGQPSSHDPVNRARLLSEREINVLRYLVNGLSNKQIADEMFISNKTVSTYK 185 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 +R++ KL S+++L +A + + Sbjct: 186 TRILTKLGLSSVIELADYAHTHNL 209 >UniRef50_P0A4H3 Virulence factors putative positive transcription regulator bvgA n=56 Tax=Proteobacteria RepID=BVGA_BORBR Length = 209 Score = 142 bits (357), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 121/204 (59%), Gaps = 3/204 (1%) Query: 4 IIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQV 63 +IIDDHP+ A+R L+ K E++ E G ++ P++V++D+ IP ++G++V Sbjct: 6 LIIDDHPVLRFAVRVLMEKEGFEVIGETDNGIDGLKIAREKIPNLVVLDIGIPKLDGLEV 65 Query: 64 LETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYF 123 + L+ +++++ + + + C ++GA GFV K E ++ +I A +A GY YF Sbjct: 66 IARLQSLGLPLRVLVLTGQPPSLFARRCLNSGAAGFVCKHENLHEVINAAKAVMAGYTYF 125 Query: 124 P---FSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKS 180 P S R + SD + LS +E++V++ + G N DIA+ MF+SNKTVSTYK+ Sbjct: 126 PSTTLSEMRMGDNAKSDSTLISVLSNRELTVLQLLAQGMSNKDIADSMFLSNKTVSTYKT 185 Query: 181 RLMEKLECKSLMDLYTFAQRNKIG 204 RL++KL SL++L A+RN + Sbjct: 186 RLLQKLNATSLVELIDLAKRNNLA 209 >UniRef50_C9P7K7 Two component transcriptional regulator LuxR family n=1 Tax=Vibrio metschnikovii CIP 69.14 RepID=C9P7K7_VIBME Length = 209 Score = 135 bits (339), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 71/200 (35%), Positives = 128/200 (64%), Gaps = 3/200 (1%) Query: 4 IIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQV 63 II+DDHP+ + A+ LL ++ E++A G A+ + KP+I+++D+ IP ++G++V Sbjct: 8 IIVDDHPVIVMALSALLTQHGYEVVATTDNGVDALNLTKLKKPNILLLDIGIPMLDGLEV 67 Query: 64 LETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYF 123 ++ L +++++A+ +FY +GA+GF+SK ++ +I A++A +GY YF Sbjct: 68 IKRLENIDNPPKVLVLTAQPSNFYANRALLSGASGFLSKNADISYVIEALKAISSGYKYF 127 Query: 124 PFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKSRLM 183 P SLN F + D L LS +E++V Y++ G N +IA++M +S+KT+STYK+R++ Sbjct: 128 PDSLN-FKQQIEKDND-LSILSPRELTVFNYLVSGMPNKEIAKEMILSSKTISTYKNRIL 185 Query: 184 EKLECKSLMDLYTFAQRNKI 203 EKL K++++L A NK+ Sbjct: 186 EKLNAKNIIELSHIAN-NKV 204 >UniRef50_B2JQA9 Two component transcriptional regulator, LuxR family n=4 Tax=Burkholderia RepID=B2JQA9_BURP8 Length = 209 Score = 134 bits (338), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 71/201 (35%), Positives = 120/201 (59%), Gaps = 6/201 (2%) Query: 4 IIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +I+DDHP+ AI ++ + +++I+ E +G ++ V +LKPD+ ++D+D+P ++G+ Sbjct: 12 VIVDDHPMIRGAIVSVFRSDSELQIVGESGDGEEGLRMVLSLKPDLAVLDLDLPSLDGLS 71 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 ++ +R + S I+++SAK DH H AGANG+VSK + ++ A G+ Sbjct: 72 MIRRIRAQDDSMRILVLSAKPDHVMSLHTQQAGANGYVSKGRELTEMLTAARTVLLGFDC 131 Query: 123 FPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKSRL 182 FP + + LD LS +E+ V++Y+ G N +IA ++F+S+KTVSTYK+RL Sbjct: 132 FPAN-----APHANKAGGLDVLSPREMEVLQYLARGVSNKEIASRLFLSDKTVSTYKTRL 186 Query: 183 MEKLECKSLMDLYTFAQRNKI 203 EKL SL L FA +K+ Sbjct: 187 CEKLGLSSLAALIEFATLHKL 207 >UniRef50_Q46SR4 Two component transcriptional regulator, LuxR family n=14 Tax=Burkholderiales RepID=Q46SR4_RALEJ Length = 232 Score = 134 bits (338), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 74/205 (36%), Positives = 122/205 (59%), Gaps = 10/205 (4%) Query: 4 IIIDDHPLAIAAIRNLLIKNDIEILA-----ELTEGGSAVQRVETLKPDIVIIDVDIPGV 58 +I+DDHP A+R +L + ++L E G +AV+ V PD+VI+D+DIP + Sbjct: 30 LIVDDHP----AVRVVLKTHLSQVLGVTHVLEADNGQAAVEIVRQYAPDVVILDLDIPRI 85 Query: 59 NGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKN 118 NG+ V+ L+ Q I+++S ++ + + AGANG+VSK + + I+ +E+ Sbjct: 86 NGLDVIPRLKAIQPGVRILVISGQDQNTFAPRARQAGANGYVSKTQELPEIVRCVESVLA 145 Query: 119 GYCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTY 178 GY P ++ + ++L SLS +E+ +M+ + G N I E +FISNKTVST+ Sbjct: 146 GYSVMP-DVDGGRADGVDETRRLGSLSDKELVIMQMLAKGMSNKQIGEVLFISNKTVSTH 204 Query: 179 KSRLMEKLECKSLMDLYTFAQRNKI 203 K+R+MEKL +SL+D+ FA+R+ I Sbjct: 205 KTRIMEKLGARSLVDVIDFARRHHI 229 >UniRef50_Q88HE8 DNA-binding response regulator, LuxR family n=5 Tax=Pseudomonas RepID=Q88HE8_PSEPK Length = 204 Score = 134 bits (337), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 69/203 (33%), Positives = 124/203 (61%), Gaps = 3/203 (1%) Query: 2 NAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGI 61 +I+DDHP+ ++R LL + ++ E+ G Q L+PD+VI+D+ +PG++G+ Sbjct: 3 TVLIVDDHPIVRLSLRLLLERERFHVIGEVGNGSEVAQVARELRPDVVILDIGLPGLDGM 62 Query: 62 QVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 121 +V++ L+ + ++++ + Y + C DAG FV+K+E ++ A++A GY Sbjct: 63 EVIKRLQSLEPVPKFMVLTGQATDLYVRRCLDAGIGAFVTKEEDHEALLFALKALTKGYS 122 Query: 122 YFP-FSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKS 180 FP S+N SL S+ +L SLS +E+ V+R + G++N +I M +S KT+STY+ Sbjct: 123 TFPQMSVNS--NSLESEPVRLASLSNREMEVLRRLARGENNKNIGTCMNLSAKTISTYRG 180 Query: 181 RLMEKLECKSLMDLYTFAQRNKI 203 R+MEKL+ +SL+++ A+RN + Sbjct: 181 RIMEKLKTESLVEMVDLAKRNSV 203 >UniRef50_B1T1G9 Two component transcriptional regulator, LuxR family n=1 Tax=Burkholderia ambifaria MEX-5 RepID=B1T1G9_9BURK Length = 204 Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 62/204 (30%), Positives = 126/204 (61%), Gaps = 2/204 (0%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 M +I+DDHP A+ ++L +N +++++ ++GG ++ LKPD++I+D+D+ G++ Sbjct: 1 MRVVIVDDHPTVQLALTSILERNVNLKVVGTASDGGEGLRLCRELKPDLLIVDIDLDGMD 60 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI +++ +R + + I++ S + + C AGANG+V+K E + ++++A A G Sbjct: 61 GIDLIQRVRIKDATVKILVFSGYSAELFALRCHAAGANGYVNKSEDVTHVLSAANAVLAG 120 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 + FP +N + S + LS++E++V+RY+ G N +I + + +SNKT+ST+K Sbjct: 121 FHCFPLDINA-MASGSGPHAAFAMLSERELTVLRYLAKGLSNKEIGDSLSLSNKTISTHK 179 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 + ++ KL +++DL FA+ + + Sbjct: 180 ANILAKLGFTNVVDLAAFAKAHHL 203 >UniRef50_Q4KCH2 DNA-binding response regulator, LuxR family n=1 Tax=Pseudomonas fluorescens Pf-5 RepID=Q4KCH2_PSEF5 Length = 208 Score = 129 bits (323), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 122/206 (59%), Gaps = 6/206 (2%) Query: 2 NAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGI 61 + +I+DDHP+ AIR L I+ E +G SA+ + +L+PDIVI+DV + ++G+ Sbjct: 4 SVLIVDDHPVVCEAIRKTLESQGYTIVGETADGISALNMILSLRPDIVILDVSLEKMDGL 63 Query: 62 QVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 121 VL+ + + +++ +A++ Y C AGA+GFVSK E + ++ A++ GY Sbjct: 64 TVLKRIAQANLDVRVLVFTAQSVDTYAMRCLQAGASGFVSKNEPLTKLLKAVDTIVEGYV 123 Query: 122 YFPFSLNRFV----GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 +FP F G +SD L +L+ +E+ V++ + +G N +IAEK+ +SNKTVS Sbjct: 124 FFPKKSMPFSDGGRGKHSSDV--LAALTNRELEVLKLLAEGLTNLEIAEKLHLSNKTVSG 181 Query: 178 YKSRLMEKLECKSLMDLYTFAQRNKI 203 +K ++ KL S++DL A++N++ Sbjct: 182 HKINILSKLGVTSVVDLVNIARQNEL 207 >UniRef50_A4SH97 Two-component system response regulator n=4 Tax=Aeromonas RepID=A4SH97_AERS4 Length = 207 Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 72/200 (36%), Positives = 118/200 (59%), Gaps = 4/200 (2%) Query: 4 IIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQV 63 +I+DDHP A++ LL+ I E+ G A+Q V+ P+IV++D+ IP ++GI V Sbjct: 5 LIVDDHPAIRMAVKILLLAEGFHICGEVDNGIDALQIVKASTPNIVVLDIGIPKLDGIDV 64 Query: 64 LETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYF 123 + ++K +I+++SA++ + C AGANGF+SK + + + +AI+A +G YF Sbjct: 65 INRIKKSNSQSLIVVLSAQDGNHIMSRCFQAGANGFISKMDDLMLLSSAIKACLDGKRYF 124 Query: 124 P---FSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKS 180 P S ++ SD L SLS +E+ V + G N +IA M +S KT+STYKS Sbjct: 125 PDEIISEGDQASNINSDDALL-SLSDREMRVFLSLCKGCSNKEIANNMLLSEKTISTYKS 183 Query: 181 RLMEKLECKSLMDLYTFAQR 200 R+M KL+ ++++L A+R Sbjct: 184 RVMRKLQVNNMVELIDLAKR 203 >UniRef50_P0AEL9 Fimbriae Z protein n=80 Tax=Enterobacteriaceae RepID=FIMZ_ECO57 Length = 210 Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 65/201 (32%), Positives = 123/201 (61%), Gaps = 3/201 (1%) Query: 2 NAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 + II+D HP+ +I LL KN +++I+ + + + + T D++I+D+D+PG +G Sbjct: 5 SVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRTRPVDLIIMDIDLPGTDG 64 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 L+ +++ Q + ++ +S+K++ FY AGANGFVSK N+I A++ +GY Sbjct: 65 FTFLKRIKQIQSTVKVLFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSGY 124 Query: 121 CYFPFSLNRFVGS--LTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTY 178 +FP ++ S +++ + LS +E++++RY++ G N +IA+K+ +SNKTVS + Sbjct: 125 TFFPSETLNYIKSNKCSTNSSTVTVLSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAH 184 Query: 179 KSRLMEKLECKSLMDLYTFAQ 199 KS + KL S+++L +A+ Sbjct: 185 KSNIYGKLGLHSIVELIDYAK 205 >UniRef50_A6AYG5 Response regulator VbsA n=11 Tax=Vibrio RepID=A6AYG5_VIBPA Length = 195 Score = 122 bits (305), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 68/197 (34%), Positives = 114/197 (57%), Gaps = 11/197 (5%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKP---DIVIIDVDIPG 57 MN +I DDHPL AI++LL ++ + E+ SA +TLK +++I+DV++ Sbjct: 1 MNCLIFDDHPLVCVAIKSLL--KELGMTNEVFTATSAKSAFKTLKESNIELLILDVNLAD 58 Query: 58 VNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAK 117 +G + ++ Y G +I SA+ Y + +GA+G+V K E + + AIEA Sbjct: 59 CDGFDFYKRIKSHGYEGKVIFFSAETSQMYSQMAFRSGADGYVCKSENHDILKDAIEAVV 118 Query: 118 NGYCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 GY +F F + ++ +++ LS +E +VM+Y+L GK N DIA + IS+KTVST Sbjct: 119 KGYTFFKFK------QVANEVREMPQLSSRESAVMKYLLQGKSNRDIASVLSISDKTVST 172 Query: 178 YKSRLMEKLECKSLMDL 194 YK R+++K K++++L Sbjct: 173 YKRRVLDKFNVKNIVEL 189 >UniRef50_B8G137 Two component transcriptional regulator, LuxR family n=3 Tax=Desulfitobacterium hafniense RepID=B8G137_DESHD Length = 217 Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 71/212 (33%), Positives = 119/212 (56%), Gaps = 9/212 (4%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH + A ++ LL + D+E++ E ++G A+ RV+ L PD+V++D+ +P +N Sbjct: 5 LRIVLADDHAVLRAGLKVLLNAEPDLEVIGEASDGEEAIDRVDDLHPDLVLLDLTMPKLN 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ +E L K+ I++++ +D Y K GA G+V KK +++AI G Sbjct: 65 GVDCIEELLKKHADLKILVLTMHDDEEYLKAVLQVGAKGYVLKKAADVELLSAIRTVARG 124 Query: 120 YCY-FPFSLNRFV-GSLTS------DQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFIS 171 + +P FV L S + +KL LS++E+ V+R + G N DIA+ + +S Sbjct: 125 EMFIYPTMAAEFVYRHLVSPREPEKESKKLKQLSERELEVLRNLALGHTNQDIADLLHVS 184 Query: 172 NKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 KTV TYK+R+MEKLE +L +A N I Sbjct: 185 VKTVETYKARVMEKLEMHKRAELVRYAMENGI 216 >UniRef50_A1HU08 Two component transcriptional regulator, LuxR family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HU08_9FIRM Length = 216 Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 115/206 (55%), Gaps = 5/206 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I+DDH L + +R +L + DIE++ E +G + + ++PD+V++D+ +P ++ Sbjct: 4 IKVLIVDDHTLMRSGLRLMLSAQEDIEVVGEAADGSGGIAMAQKMRPDVVLLDISMPEMS 63 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ L+TL Q +I+++ D Y K GA G+V KK + + A+ A +G Sbjct: 64 GLECLKTLLANQPDLRVILLTMHEDARYVKEGFALGAMGYVLKKAADDVLYQAVRAVYSG 123 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSK----QEISVMRYILDGKDNNDIAEKMFISNKTV 175 Y S+ + V + +++ + D L K QE V+ I G N +IAE++ IS KTV Sbjct: 124 EMYIQPSITKAVVAELTERPRADDLRKPLSDQEKKVLSLIAAGYANREIAEQLVISVKTV 183 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRN 201 TYK R+MEKL CK DL FA N Sbjct: 184 ETYKYRIMEKLNCKKRSDLVKFALDN 209 >UniRef50_C4TR02 Histidine kinase n=1 Tax=Yersinia kristensenii ATCC 33638 RepID=C4TR02_YERKR Length = 477 Score = 116 bits (290), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 67/195 (34%), Positives = 114/195 (58%), Gaps = 4/195 (2%) Query: 2 NAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 +A+I+DDHP AAIR LL +N+ + EL++G A + ++ +VIID+++P +G Sbjct: 4 SAMIVDDHPAIRAAIRALLSQRNEFSTIYELSDGSEAFEILKNNTIVLVIIDIELPNFDG 63 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 +L+ L++R ++G + +SAKND + AGANG +SK + ++ I+ A++ GY Sbjct: 64 FSLLKKLQQRGFTGKSLFLSAKNDQSFAVRALQAGANGLISKNKDISEILFAVQRILRGY 123 Query: 121 CYFPF-SLNRFVGSLTSDQ--QKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 +FP +L + G + + LS I+ Y+ +G N I +++ ISNKTVST Sbjct: 124 SFFPSETLTQLAGQPLRHELINRTHFLSAWGINDFGYLTNGLVNKQITDEICISNKTVST 183 Query: 178 YKSRLMEKLECKSLM 192 YK ++ KL S++ Sbjct: 184 YKMHILTKLRLNSVI 198 >UniRef50_C4ZEG3 Two-component response regulator (Extracellular proteinase response regulator) n=3 Tax=Bacteria RepID=C4ZEG3_EUBR3 Length = 214 Score = 114 bits (286), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 66/208 (31%), Positives = 118/208 (56%), Gaps = 5/208 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 +N +I DDH + ++NLL + DI+++AE G + +++T +PD++++D+++P +N Sbjct: 3 INIMITDDHSMIREGLKNLLELDGDIKVIAEAENGEDCLDKLKTFRPDVLLLDINMPKMN 62 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++VL+ L+ R+ +++++ N+ Y D G NG+V K + AI +G Sbjct: 63 GLEVLKALKDRKSKVKVLVLTVHNETEYLMKAVDIGINGYVLKDSESAELKKAIFTIADG 122 Query: 120 YCYFPFS----LNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 Y S LN + D+ K+D+L+K+E+ V++ + GK N DIA++M IS +TV Sbjct: 123 ETYIQPSLIPALNSKMIQKNEDELKIDALTKREMEVLKEMAVGKFNRDIAKEMKISERTV 182 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKI 203 + S + +KLE FA RN I Sbjct: 183 KNHISSIFKKLEVTDRTQAAVFAIRNNI 210 >UniRef50_Q3KF50 Putative LuxR family Two Component Transcriptional Regulator n=1 Tax=Pseudomonas fluorescens Pf0-1 RepID=Q3KF50_PSEPF Length = 209 Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 67/205 (32%), Positives = 112/205 (54%), Gaps = 3/205 (1%) Query: 2 NAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGI 61 +A+I+DDHP+ + A+R +L + G V + P +V++D+ + G G+ Sbjct: 3 SALIVDDHPVVVGALRLVLESAGYTPIHVTGRGVDVVPMLREHAPKLVVLDLKLDGFGGL 62 Query: 62 QVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 121 +VL +R ++I ++ + Y C AGA FV+K M ++ AI+A ++GY Sbjct: 63 EVLARIRAVGLVCNVVIFTSADPEHYLMRCRRAGAMAFVAKSASMQHLQNAIKAVRSGYT 122 Query: 122 YFP--FSLNRFVGSLTSDQQKLDS-LSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTY 178 YFP +N D+++L + LS +E+ +M + G+ N IA M +S+KT+STY Sbjct: 123 YFPEMPVVNTGQSEAHRDERELIALLSTREMEIMLKLARGESNKHIALAMNLSHKTISTY 182 Query: 179 KSRLMEKLECKSLMDLYTFAQRNKI 203 K+RLM KL SL+ L F +RN + Sbjct: 183 KTRLMLKLGVSSLVVLREFVKRNGL 207 >UniRef50_A4SZV7 Two component transcriptional regulator, LuxR family n=1 Tax=Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 RepID=A4SZV7_POLSQ Length = 207 Score = 113 bits (283), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 64/201 (31%), Positives = 115/201 (57%), Gaps = 3/201 (1%) Query: 4 IIIDDHPLAIAAIRNLLIKNDI-EILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +++DDHP + A++++L + EI + G ++ ++ + P++VI+D+D+P +G Sbjct: 6 MLVDDHPAMLMALKSMLQDQLLFEIAGQAQNGEECLRSIKEVNPNMVILDLDMPKTDGFD 65 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 V+ + ++++S+ ++ YG GA+GFV+K G + I+AA A GY + Sbjct: 66 VIRRIGLMYPDIRMLVLSSLDEAVYGGRVRSLGAHGFVNKTAGADVILAACVAISQGYNF 125 Query: 123 FPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKSRL 182 F N S +D KL +S +E+ VM+Y+ G N I++ + ISNKTV+TYK+R+ Sbjct: 126 FTHGKNG--NSSLTDNDKLALISDRELQVMKYLGKGNTNQQISDLLHISNKTVATYKTRV 183 Query: 183 MEKLECKSLMDLYTFAQRNKI 203 +KL ++ DL F + N I Sbjct: 184 FDKLGINNIADLILFCRINNI 204 >UniRef50_C9QEV1 Response regulator VbsA n=2 Tax=Vibrio RepID=C9QEV1_VIBOR Length = 199 Score = 113 bits (283), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 68/196 (34%), Positives = 113/196 (57%), Gaps = 8/196 (4%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKN--DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGV 58 MN +I+DDHPL AA++N++ N + I+ + V E K DI+I+D+++ Sbjct: 1 MNILIVDDHPLVCAALKNVIEDNFENATIVQAFNAKKAFVYLAEN-KVDILILDIELGDD 59 Query: 59 NGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKN 118 +G +L + + G +I+VS+K++ AGA+G++ KKE ++ + AI+A + Sbjct: 60 DGFDLLHKAKGFGFDGKVIVVSSKDEKLCSDLAISAGASGYLDKKESVSRVADAIKAVNS 119 Query: 119 GYCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTY 178 GY YF R + ++ LS +E SV+R +LDG N +IA +M IS KTVSTY Sbjct: 120 GYTYF-----RQANAASTQGTGAIKLSTRESSVLRLLLDGHTNKEIARRMDISEKTVSTY 174 Query: 179 KSRLMEKLECKSLMDL 194 K R+++K + +S+ L Sbjct: 175 KRRILDKYDVRSVFML 190 >UniRef50_C9PHC4 Putative fimbrial protein Z transcriptional regulator n=1 Tax=Vibrio furnissii CIP 102972 RepID=C9PHC4_VIBFU Length = 183 Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 61/186 (32%), Positives = 114/186 (61%), Gaps = 13/186 (6%) Query: 15 AIRNLLIKND--IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQY 72 A++ +L +N E+L E ++ V+++ + D +I+DV++ ++G +VL L+ + + Sbjct: 2 AMKQILDRNPRFTEVLVE-SDPFVGVKKLRQTQVDFLILDVNLVKLDGFEVLRRLKLQGF 60 Query: 73 SGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYFPFSLNRFVG 132 +G + VSA Y + GA+G++SK E ++ + A+E NGY +F Sbjct: 61 TGKTLFVSASESRLYSETAMRVGADGYISKSEDLSILQDAVECILNGYSFFK-------- 112 Query: 133 SLTSDQQKLD-SLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKSRLMEKLECKSL 191 +T+D + +D LSKQE++V R+++DGK N +IAE + +S KT+STYKSR+++K + S+ Sbjct: 113 -VTTDTKSMDVELSKQELAVFRFLVDGKSNKEIAEILSLSPKTISTYKSRILDKYQVNSI 171 Query: 192 MDLYTF 197 ++L + Sbjct: 172 VELMSL 177 >UniRef50_B1FBA4 Two component transcriptional regulator, LuxR family n=1 Tax=Burkholderia ambifaria IOP40-10 RepID=B1FBA4_9BURK Length = 204 Score = 109 bits (273), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 63/200 (31%), Positives = 122/200 (61%), Gaps = 6/200 (3%) Query: 4 IIIDDHPLAIAAIRNLLIKNDI-EILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +++DDHP+ + A+ LL + I E +A +G SA + +T +PD++I+D+++P ++G+ Sbjct: 5 LLVDDHPIYLIALSTLLQQERIAENVAVAKDGESAWELYKTEQPDLMIVDLNLPTLSGVD 64 Query: 63 VLETLR-KRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 121 ++ +R + I++ SA+ + GK A GANG+V K E ++ ++ A+ A +G+ Sbjct: 65 FVKRVRVSDSHVRILVFSSARTEVMAGKIRA-IGANGYVQKTEDISQMLNAVRATLSGFD 123 Query: 122 YFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKSR 181 FP + L+ + +LS +EI+V+ Y++ G N +IA+ + +S+KTVST+K+ Sbjct: 124 CFPSAAG---DPLSGSGRIAAALSPREITVLSYLVKGHSNQEIADLLHVSHKTVSTHKAH 180 Query: 182 LMEKLECKSLMDLYTFAQRN 201 + +K +++DL FA+ N Sbjct: 181 IFQKTGITNIVDLAEFAREN 200 >UniRef50_A8VTE0 Response regulator receiver protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VTE0_9BACI Length = 219 Score = 109 bits (273), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 120/209 (57%), Gaps = 9/209 (4%) Query: 4 IIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +++DDHP+ + ++++L + D ++AE +G SA++ PDI+I+D+ +PG++GI+ Sbjct: 6 MLVDDHPVFRSGLKHILCTEADYHVIAEADDGESAIEMAAEANPDIIIMDISMPGLDGIE 65 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 V ++++ I++++ D + K DAGA+G+V K+ ++ A++ NG Y Sbjct: 66 VTREIKRKIPDIRILMLTMYADEAFLKESLDAGASGYVLKRAVDTELVHAVKLVMNGEHY 125 Query: 123 -FPFSLNRFVG-------SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 +P + + +++ D + LS++E V++YI G +I+ ++FIS KT Sbjct: 126 IYPTLIPKLYHANQPQQDAVSPDSNQAVELSQREQEVLKYIALGYTQKEISTELFISIKT 185 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 V TYK R+MEK+ K L +A ++ I Sbjct: 186 VDTYKKRVMEKIGSKKKSALVRYALKHNI 214 >UniRef50_Q5ZS73 Response regulator GacA n=10 Tax=Gammaproteobacteria RepID=Q5ZS73_LEGPH Length = 225 Score = 107 bits (267), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 65/204 (31%), Positives = 114/204 (55%), Gaps = 4/204 (1%) Query: 4 IIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +I+DDH L IR LL +D++++A+ G A+ V+T PD+V++D+ +PG++G + Sbjct: 11 LIVDDHALVRMGIRRLLEDMSDVDVVADAESGEQALAYVKTHSPDVVLLDMKMPGIDGWE 70 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 V L+K + +I V+A GA G+++K+ G + AAI G Y Sbjct: 71 VTRRLKKTNPNIKVIAVTAICSDPLPTRVLQLGAMGYLTKESGAEEMAAAIRKVAKGEKY 130 Query: 123 FPFSLNR--FVGSLTSDQ-QKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 + + + SL Q D LS++E+ VM I G + DIA+++F+S+KT++ Y+ Sbjct: 131 LSAEIAQKMAINSLQESQDSPFDLLSEREMQVMLMITSGMNVQDIADRLFLSSKTINGYR 190 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 R+ EKL K+ ++L A +++I Sbjct: 191 YRMFEKLGIKNDVELTYLAMKHRI 214 >UniRef50_Q1QVM5 Two component transcriptional regulator, LuxR family n=29 Tax=Gammaproteobacteria RepID=Q1QVM5_CHRSD Length = 214 Score = 107 bits (267), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 116/206 (56%), Gaps = 9/206 (4%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH L +I +L D ++++AE +G AV L+PDIV++D+ +PG+ Sbjct: 2 IKVLVADDHHLVRTSIARMLDSEDGLKVIAEAVDGEEAVNMARELRPDIVLMDIRMPGIG 61 Query: 60 GIQVLETLRK--RQYSGI-IIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAA 116 G LE RK R S I ++IV+A + + + DAGA GF+SK ++ ++ AI A Sbjct: 62 G---LEATRKIMRGMSDIKVVIVTAFLEEAFAQRLMDAGAAGFISKGTELDEMVRAIRAI 118 Query: 117 KNGYCYFPFSLNRFV--GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 +G Y + + V + + D LS +E+ V I++ + +DI++++F+S KT Sbjct: 119 FDGQRYISPDIAQKVVLSKMGTQDNPFDQLSHRELQVAMMIVNCQKVSDISDRLFLSPKT 178 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQR 200 V+TY+ R+ EKL +S ++L R Sbjct: 179 VNTYRYRIFEKLNVQSDVELTHLGLR 204 >UniRef50_UPI00016A3B5F transcriptional regulator FimZ n=1 Tax=Burkholderia ubonensis Bu RepID=UPI00016A3B5F Length = 169 Score = 107 bits (266), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 56/162 (34%), Positives = 97/162 (59%), Gaps = 8/162 (4%) Query: 47 DIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGM 106 ++ I+D++IPG +G+++L+ +R ++I SA ++ Y + AGANGF+SK+ + Sbjct: 10 ELAILDIEIPGGDGLRLLKRIRAEGLKTRVLIFSAMDERIYSVRASKAGANGFLSKRNDI 69 Query: 107 NNIIAAIEAAKNGYCYFPFSLNRFVGSLTSDQQKLDS-----LSKQEISVMRYILDGKDN 161 I+ A++ +GY +FP V +L D+ + + L+ +E++V+R + G N Sbjct: 70 AQILIAVKTILSGYLFFPAEA---VSALYHDRTRQSANRTGGLTDRELTVLRGLARGSSN 126 Query: 162 NDIAEKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 I E + ISNKTVSTYKS + EKL S++ L +A+RN + Sbjct: 127 RQIGEDLCISNKTVSTYKSNIFEKLGVSSVVGLADYARRNGL 168 >UniRef50_Q07TZ6 Two component transcriptional regulator, LuxR family n=16 Tax=Rhizobiales RepID=Q07TZ6_RHOP5 Length = 237 Score = 106 bits (265), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 66/206 (32%), Positives = 108/206 (52%), Gaps = 8/206 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + I DDHPL ++ ++ LL + +IE++ E +G SA++R L PD+ + D+ +PG+N Sbjct: 21 LRVFIADDHPLILSGMKTLLATDPEIELVGEAVDGPSALRRAIDLDPDVAVFDLSMPGLN 80 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+V++ L + +++VS D + G G++ K+ ++ I A +G Sbjct: 81 GIEVIQKLFAVRPHARVLVVSVHEDGANLRRLLKMGVAGYILKRSATEELVRGIHAVAHG 140 Query: 120 YCYF-PFSLNRFVGSL---TSDQQK---LDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 Y P + VG L SD + L LS +E V++ G N I+ K+ + Sbjct: 141 GIYLDPAIAGQAVGRLAQAASDSVEGGCLAHLSAREKEVLQLAAVGHSNKVISAKLEVGP 200 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFA 198 K+V TYK+R MEKL S +DL FA Sbjct: 201 KSVETYKARAMEKLGFTSRVDLIRFA 226 >UniRef50_B8GSX5 Response regulator receiver protein n=2 Tax=Ectothiorhodospiraceae RepID=B8GSX5_THISH Length = 220 Score = 106 bits (265), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 66/210 (31%), Positives = 115/210 (54%), Gaps = 7/210 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK----NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIP 56 ++ +++DDH L IR LL + I+++ E G A+ + LKPD+V++D+++P Sbjct: 2 IDVLLVDDHELVRMGIRGLLDERAAVTGIQVVGEAHSGEEALVEAKRLKPDVVLMDINMP 61 Query: 57 GVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAA 116 G+ G+ + + Q S +++++A ++ + +AGA+G+++K + +IAAI+ A Sbjct: 62 GIGGLVATRRIVEAQPSVKVLVLTAMDEGPVPRWVLEAGASGYLTKGCRIEEMIAAIQGA 121 Query: 117 KNGYCYF-PFSLNRF-VGSLTSDQ-QKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 G + P R +G L Q D LS +E ++ IL G+ IA + IS K Sbjct: 122 MQGERHISPAVAQRLALGGLAKGQANPFDELSGRERQILLMILQGQTPQAIATALNISPK 181 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TVSTYK R+M KL + M L T A ++ + Sbjct: 182 TVSTYKCRVMGKLGISNDMQLVTLAAQHGL 211 >UniRef50_C9QDP7 DNA-binding response regulator LuxR family n=2 Tax=Vibrio RepID=C9QDP7_VIBOR Length = 209 Score = 106 bits (264), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 64/198 (32%), Positives = 112/198 (56%), Gaps = 3/198 (1%) Query: 4 IIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 I+ DDH L +++ L + D ++I+A + G A++ LKPD++++D+++P +NGI+ Sbjct: 5 ILADDHRLMQDGLKSRLEREDNLDIIACVGTGTEALEATLELKPDVLLLDINMPNLNGIE 64 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 VLE L K + +I++S + Y AGA G+V K G ++ AI G Y Sbjct: 65 VLEQLAKTSSATSVIMLSMHDSRDYVVRSVKAGAKGYVLKDVGSEELVMAINQVAQGRSY 124 Query: 123 F-PFSLNRFVGSLT-SDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKS 180 P + +R + + + ++K D+LSK+E V++ I +G N +IA+ + IS +TV T++ Sbjct: 125 LCPQASDRLLEQINEAPEEKDDTLSKRESDVLKAIANGAGNKEIADSLHISVRTVETHRL 184 Query: 181 RLMEKLECKSLMDLYTFA 198 R+ +KL S L A Sbjct: 185 RIKKKLGATSTAALVKLA 202 >UniRef50_Q1LEP5 Two component transcriptional regulator, LuxR family n=3 Tax=Burkholderiaceae RepID=Q1LEP5_RALME Length = 214 Score = 106 bits (264), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 64/204 (31%), Positives = 108/204 (52%), Gaps = 9/204 (4%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + II DDH + +R++L + +D E++ E G Q V L P ++++D+ +PG N Sbjct: 2 IRVIIADDHTVVRNGLRHILERTSDFEVVGEAARGTEVPQLVRELSPHVILLDLSMPGRN 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++++ LR + I++++ + Y AGA G+++K+ ++ A+ G Sbjct: 62 GLELIRQLRTDHPALRILVLTMHAEEQYVVRAFRAGAAGYLTKESAATELVEALRKVAAG 121 Query: 120 YCYF-PFSLNRFVGSLTSDQQKLDS----LSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 Y P + L Q+K D+ LS +E+ V R I+DG+ IA + +S KT Sbjct: 122 GTYVSPAMAEKLALGL---QEKPDAPHEGLSDRELEVFRRIVDGESLTQIAAALCVSAKT 178 Query: 175 VSTYKSRLMEKLECKSLMDLYTFA 198 VSTYK RLMEKL+ +S L +A Sbjct: 179 VSTYKMRLMEKLQLRSDAALVRYA 202 >UniRef50_B8FFJ9 Two component transcriptional regulator, LuxR family n=2 Tax=Desulfobacteraceae RepID=B8FFJ9_DESAA Length = 212 Score = 105 bits (263), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 112/208 (53%), Gaps = 5/208 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH + A +R ++ + DI+++ E + G A+ PD+ ++D+ +PG++ Sbjct: 2 IRVLLADDHVIVRAGLRRIIEDSEDIKVIVEASNGKEAIDLTLEHCPDVAVVDISMPGID 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++V+ L ++I++ + Y +AGA G+++KK ++ AI +G Sbjct: 62 GLEVVSRLHAELPDLPMLILTMHEEEQYVVRAIEAGAMGYMTKKSAPEQLVTAIRKLHSG 121 Query: 120 YCYFPFSLNRFVGSLTSDQQK----LDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 + + S K LDSLSK+E+ V+R++ G N +IA+ IS KTV Sbjct: 122 SRFLTEEAAELLALRVSRWSKGGSLLDSLSKRELQVLRHLASGHTNREIADSYHISVKTV 181 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKI 203 TY++RL++KL ++ D+ FA +N + Sbjct: 182 DTYRARLLKKLNLRNNADISRFAIQNNL 209 >UniRef50_B1M5J4 Two component transcriptional regulator, LuxR family n=7 Tax=Bacteria RepID=B1M5J4_METRJ Length = 222 Score = 105 bits (263), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 58/202 (28%), Positives = 105/202 (51%), Gaps = 8/202 (3%) Query: 5 IIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQV 63 + DDHP+ +A IR LL +IE++ E T G A+ + PD+ ++DV +PG+NG+++ Sbjct: 9 LADDHPIVLAGIRTLLNADPEIELVGEATSGSEALPMIHAADPDVAVVDVSMPGLNGLEL 68 Query: 64 LETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYF 123 E + +++++ D Y + AGA G++ K+ +++ A+ A G Y Sbjct: 69 TERVAGSCPRTRVLVLTVHEDAAYVQPLLKAGARGYLLKRSAAEDLLRAVRAVAAGGIYL 128 Query: 124 -PFSLNRFVGSLTSDQQKLDS------LSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 P + + + Q D+ LS +E V+R I G N +IA + +S K++ Sbjct: 129 DPSVASHAMAHPATPTQGGDTEPSAEALSPRETDVLRLIAQGFSNKEIARRFDLSVKSIE 188 Query: 177 TYKSRLMEKLECKSLMDLYTFA 198 TYK+R EKL ++ ++ +A Sbjct: 189 TYKARAAEKLGLRTRAEIIRYA 210 >UniRef50_Q1LR81 Two component transcriptional regulator, LuxR family n=1 Tax=Cupriavidus metallidurans CH34 RepID=Q1LR81_RALME Length = 207 Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 66/212 (31%), Positives = 121/212 (57%), Gaps = 17/212 (8%) Query: 2 NAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETL-KPDIVIIDVDIPGVN 59 NA++ID+HP AA L+++ E + T A++ + T +PD+V++D+D+ + Sbjct: 3 NALVIDNHPGVRAAASAALMESMGFEEVRLATTATEALEELRTRQRPDLVMVDLDLGDLP 62 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G V+E + + ++++SA + + +GA+G+V K G+ I A+ A +G Sbjct: 63 GDAVVEEVVSHHPATRVLVLSAASG--AAERALLSGAHGYVDKGNGIGGIEHAVRAVMSG 120 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDS-------LSKQEISVMRYILDGKDNNDIAEKMFISN 172 Y FP +L LT+ ++ ++ LS++E++VMR++ G N I+ + ISN Sbjct: 121 YAAFPLAL------LTTIRRAANAPADPILVLSRRELTVMRFLAAGHSNKAISVVLGISN 174 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNKIG 204 KTVS++K+ +M KL +SL+DL FA+R+ + Sbjct: 175 KTVSSHKASIMTKLGFRSLIDLAEFARRHHLA 206 >UniRef50_B2JQB0 Two component transcriptional regulator, LuxR family n=1 Tax=Burkholderia phymatum STM815 RepID=B2JQB0_BURP8 Length = 194 Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 64/202 (31%), Positives = 115/202 (56%), Gaps = 10/202 (4%) Query: 4 IIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +++DDHP+ A+R +L ++ D +++AE +A+ L + I+D+ +P +GI Sbjct: 1 MVVDDHPVMRRALRYVLDESADFDMVAEAGSVAAALTSAAALDLSLAIVDLRLPDGDGID 60 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 ++ L + I++ S+ ++ G H +AGA+GFVSK G + ++A++ GY Sbjct: 61 LIAQLSSAKPGLRIVVFSSVDERLNGAHVRNAGAHGFVSKLRGPDELLASLGLVMIGYTC 120 Query: 123 FPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKSRL 182 F L G +LS++E SV+ ++ G+ N +IA + +S KTVSTYK RL Sbjct: 121 FASELVEPAGV---------ALSRRETSVLHRLIRGQSNVEIATSLNLSPKTVSTYKMRL 171 Query: 183 MEKLECKSLMDLYTFAQRNKIG 204 M+KL+ +S++DL +A+ N + Sbjct: 172 MQKLDLQSVVDLVEYAKTNGLA 193 >UniRef50_B4VFW8 Two-component system response regulator n=2 Tax=Bacteria RepID=B4VFW8_9ACTO Length = 216 Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 109/210 (51%), Gaps = 8/210 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH + +R L ++ DIE++ E ++G + R E L+PD++++D+ +PG + Sbjct: 8 VRVLLVDDHQVVRRGLRTFLEVQEDIEVVGEASDGEEGIARAEELRPDVILMDIKMPGTD 67 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ L LR+ ++IV++ + AGA G+V K + + AI + G Sbjct: 68 GIEALRRLRELANPARVLIVTSFTEQRTVVPALRAGAAGYVYKDIDPDALAGAIRSVHAG 127 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDS-----LSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 + + V LT D Q S L+ +E V+ +I DG+ N +IA + +S KT Sbjct: 128 HVLLQPEVA--VALLTQDDQGPSSSRGGALTDREREVLSHIADGRSNREIARALVLSEKT 185 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQRNKIG 204 V T+ S ++ KL+ +A R+ IG Sbjct: 186 VKTHVSNILMKLDVADRTQAALWAVRHGIG 215 >UniRef50_B2STP5 Transcriptional regulator LuxR/uhpA family n=22 Tax=Xanthomonadaceae RepID=B2STP5_XANOP Length = 215 Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 60/189 (31%), Positives = 104/189 (55%), Gaps = 3/189 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +IDDH L ++ +L K D+ ++ E G +A+ ++ LKPDIV+ D+ +PGV+ Sbjct: 3 IRVFLIDDHALVRTGMKMILSKEVDVCVVGEAESGEAALPQIRQLKPDIVLCDLHLPGVS 62 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+++ E + K Y +IIVS D K +AGA+G+V K + ++ A+ G Sbjct: 63 GLEITERIVKGDYGTRVIIVSVLEDGPLPKRLLEAGASGYVGKGGDAHELLRAVREVALG 122 Query: 120 YCYF--PFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 Y + N + +L D+LS +E+ V + G DIA+++ +S KT++T Sbjct: 123 RRYLGNTIAQNLALSNLEGGGSPFDALSPRELEVALLLTQGLRQEDIAKRLNLSAKTINT 182 Query: 178 YKSRLMEKL 186 +K+RL EK+ Sbjct: 183 HKARLFEKV 191 >UniRef50_A5WFD3 Two component transcriptional regulator, LuxR family n=3 Tax=Psychrobacter RepID=A5WFD3_PSYWF Length = 211 Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 114/205 (55%), Gaps = 4/205 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH L I +L + +IE++ E G +A++ V+ L PD+V++DV++P + Sbjct: 2 IKVLVVDDHDLVRMGISRMLADDPEIEVIGEADSGEAAIRMVKALSPDVVLLDVNMPNIG 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + LR+ I+ VS+ + Y AG NG+++K ++ +I AI+ G Sbjct: 62 GVETTKRLRQFDEKVKILAVSSVSSQPYPSMLLKAGVNGYITKGTPLDEMIKAIKKVYQG 121 Query: 120 YCYFPFSL-NRFVGSLTSDQQK--LDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 YF + + L +D ++ D LS++E V +++ + IA+++F+S KTV+ Sbjct: 122 SKYFSSDVAEQLADMLLTDNEESPFDRLSEREKQVAMMVVNCQSPQQIADQLFVSVKTVN 181 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRN 201 TY+ R+ EK+ S + L A R+ Sbjct: 182 TYRYRIFEKVGVDSDVKLTHLAMRH 206 >UniRef50_A7HA46 Two component transcriptional regulator, LuxR family n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HA46_ANADF Length = 212 Score = 102 bits (255), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 60/210 (28%), Positives = 113/210 (53%), Gaps = 11/210 (5%) Query: 4 IIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 ++ DDH + +R L+ + + E + G AV+ + L+PD+V++DV +P +NG++ Sbjct: 1 MVADDHEVVRRGVRALVESHPGWTVCGEASNGREAVRLAQELRPDVVVLDVTMPELNGLE 60 Query: 63 VLETLRKR-QYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 121 +R + II++ +D G+ DAGA G+V K++ +++ AI+A Sbjct: 61 ATREIRASVPDTEIILLTVHDSDQLLGQ-ALDAGARGYVLKEDAARHLVDAIDALSKHAP 119 Query: 122 YFPFSLNRFVGSLTSDQQ--------KLDSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 Y P G+ + ++ ++ SL+++E V+R + G N ++A ++ IS K Sbjct: 120 YVPSRAAERPGNAAAQERNTVVSRGGRVTSLTQREREVLRLLAQGDSNREVAGQLSISAK 179 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TV T+++ +M KL S++DL +A RN I Sbjct: 180 TVETHRANVMRKLGASSIVDLVHYAIRNGI 209 >UniRef50_C0QFU8 TRAP-type C4-dicarboxylate transporter, periplasmic solute-binding protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QFU8_DESAH Length = 219 Score = 102 bits (255), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 113/209 (54%), Gaps = 9/209 (4%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ +DH + + +LL + DIE++ E G A++ VE L PD+V++D+ +P +N Sbjct: 4 IKVLVAEDHTIVRKGLCSLLYSEPDIEVVGEAENGREAIKMVEELAPDVVLMDISMPELN 63 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ L+K+ I+I+S + Y AGA+G++ K+ ++I AI AA G Sbjct: 64 GMDATRQLKKKYPDVKILILSMHSTEEYIFETLRAGASGYLIKRSAPTDLIKAIHAAHAG 123 Query: 120 YCYFPFSLNRFV--------GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFIS 171 C+ S+++ V L+ + + LD LS +E V++ I +G N +IA ++IS Sbjct: 124 DCFLSPSISKKVIKNYVQQKQGLSLEPRGLDLLSAREREVLQLIAEGHANREIAGHLYIS 183 Query: 172 NKTVSTYKSRLMEKLECKSLMDLYTFAQR 200 KTV +++ + +KL +L +A R Sbjct: 184 PKTVEAHRNHIQKKLGLNGTAELTKYAIR 212 >UniRef50_A3D3Y4 Two component transcriptional regulator, LuxR family n=46 Tax=Proteobacteria RepID=A3D3Y4_SHEB5 Length = 214 Score = 102 bits (254), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 59/203 (29%), Positives = 111/203 (54%), Gaps = 3/203 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 +N +++DDH L + L ++ ++ + +G + ++ L+PD+V +D+ +PG+ Sbjct: 9 INILVVDDHSLIFDGLLGCLAPYPELNLIGSVEDGLAVYEKCLKLRPDLVFMDLKLPGMG 68 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G V+ LR+R +II+++A + + D GANG+V K + ++AAI+ G Sbjct: 69 GFDVIRQLRQRWPEMMIIMLTATVEEKSAREALDVGANGYVLKYSPKSTLLAAIKCVCKG 128 Query: 120 YCYFPFSLN-RFVGSLTS-DQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 + SL+ R + +L+ + L+ +E V++ I +G+ N DIAE + I KTV T Sbjct: 129 KNFIDPSLDERQIAALSGVVDGDMPLLTPREQQVLKLICEGRRNRDIAEDLVIGLKTVET 188 Query: 178 YKSRLMEKLECKSLMDLYTFAQR 200 ++ LM KL ++ +L + QR Sbjct: 189 HRMNLMRKLNAHNVAELMHWVQR 211 >UniRef50_C1ZGK9 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZGK9_PLALI Length = 217 Score = 102 bits (254), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 62/207 (29%), Positives = 108/207 (52%), Gaps = 15/207 (7%) Query: 5 IIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQV 63 +I+DH L ++ L+ + D++++ E +G ++ + PD+V++D+ IP +NG ++ Sbjct: 7 LIEDHELVRTGLKLLIERQKDLQVVGEAADGAEGLKIIARTLPDVVVLDLSIPHLNGFEL 66 Query: 64 LETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYF 123 LE L+ ++ +++V+A D + + GA G ++K+ + +I AI G F Sbjct: 67 LEQLQHQKRPPKVLVVTANEDLDSLQRSWNLGAAGHLAKRSAADELIVAIRKIAAGEKVF 126 Query: 124 P----------FSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 P N G LT +SLS++E V++ I G +IA K+ IS K Sbjct: 127 PSKEESKAVKTLGFNETSGRLTGA----ESLSERETEVLKLIAAGHMAKEIAAKLDISLK 182 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQR 200 TV TYKSR M+KL + +L FA + Sbjct: 183 TVETYKSRGMQKLSLRGRTELVRFAMK 209 >UniRef50_C9QJS3 Putative two-component response regulator n=1 Tax=Vibrio orientalis CIP 102891 RepID=C9QJS3_VIBOR Length = 210 Score = 102 bits (254), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 60/195 (30%), Positives = 109/195 (55%), Gaps = 5/195 (2%) Query: 1 MNAIIIDDHPLAIAAIR-NLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 N ++ DDHPL AI+ L + + ++ ++ + SA+ ++ + VI+D+++ + Sbjct: 14 FNILVFDDHPLVGVAIKATLSLMSCVDSISSVYSFRSALDVIKNKNINFVILDINLSDGD 73 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G ++ Y G ++ SA+ Y K +GA+G+V K E + A+E NG Sbjct: 74 GYDFYRRIKSHGYQGKVLFYSAEESSLYSKLAFKSGADGYVCKSEHQEILRDAVEGISNG 133 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 Y +F F ++ S +++++ +LS +E VM ++L+GK N DI + + IS+KTVSTYK Sbjct: 134 YTFFKFKSDK---SGYENEEQV-TLSNREAMVMSHLLNGKTNKDIGQLLKISDKTVSTYK 189 Query: 180 SRLMEKLECKSLMDL 194 RL +K +L++L Sbjct: 190 KRLFDKYSVNNLVEL 204 >UniRef50_D0LYS4 Two component transcriptional regulator, LuxR family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LYS4_HALO1 Length = 212 Score = 102 bits (254), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 63/199 (31%), Positives = 108/199 (54%), Gaps = 5/199 (2%) Query: 5 IIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQV 63 I DDH L +R +L +++ IE++ E + G AV+ V+ PD++++D+ +P +GI+ Sbjct: 6 IADDHALLREGMRRMLSQSELIEVVGEASNGAEAVEVVKEKAPDVLLLDITMPVKDGIEA 65 Query: 64 LETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYF 123 + + I+I+S D Y AGANGF+SK + ++ AI G Y Sbjct: 66 TADILALNVNTKILILSMHADEQYALRTLRAGANGFISKGARLEELLKAITDVHEGQRYL 125 Query: 124 PFSLNRFVGS--LTSDQQK--LDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 P + + D +K +++LSK+E VM ++ G N +IA + IS KTV T++ Sbjct: 126 PDKIATSFAERHIRPDAEKPLVETLSKREFQVMTHLAQGMTNREIAGVLQISVKTVDTHR 185 Query: 180 SRLMEKLECKSLMDLYTFA 198 S +++KLE ++ D+ FA Sbjct: 186 SHVLKKLELRNNSDITRFA 204 >UniRef50_C5T9P3 Two component transcriptional regulator, LuxR family n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T9P3_ACIDE Length = 239 Score = 102 bits (253), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 58/196 (29%), Positives = 97/196 (49%), Gaps = 1/196 (0%) Query: 4 IIIDDHPLAIAAIR-NLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +++DDHPL +R L I + E G ++ L PDIV+ D+ +P +GI Sbjct: 8 LLVDDHPLVRDGVRMRLEATEHICVAGEAASVGESLPLAHALAPDIVLTDIRMPAASGIH 67 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 + R++ ++++S +D Y + GA G+V K +I AIEA G CY Sbjct: 68 LAAVFREQFPRVRVLVLSMHDDAEYVRRAVSLGARGYVLKDAPAQQLIEAIEAVHQGGCY 127 Query: 123 FPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKSRL 182 F L + + S + SL+ +E SV++++ +G+ N +IA M S +TV T++ L Sbjct: 128 FSPGLEQLLDDAGSVARSNRSLTPREASVLQWVSEGRSNKEIAALMGTSVRTVETHRLHL 187 Query: 183 MEKLECKSLMDLYTFA 198 KL + L +A Sbjct: 188 RRKLRIEGQAALMKYA 203 >UniRef50_D1B9T1 Two component transcriptional regulator, LuxR family n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B9T1_THEAS Length = 227 Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 58/206 (28%), Positives = 112/206 (54%), Gaps = 5/206 (2%) Query: 4 IIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 ++ DDH L +R LL ++ D+E++ E +G + V+ V LKPD+++ D+ +P +GIQ Sbjct: 7 VLADDHRLFRDGLRRLLEMEKDMEVIGEAEDGDATVEMVSALKPDVLLFDIHMPKKDGIQ 66 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 V++ L+ S + ++A +D + + G + +V K GM +++AI + G+ Y Sbjct: 67 VVKDLKAMGCSPRFVAITAFDDDDHITALSSVGIDAYVLKASGMAELLSAIRSVYRGHSY 126 Query: 123 F-PFSLNRFVGSLTSDQQKLDSLSK---QEISVMRYILDGKDNNDIAEKMFISNKTVSTY 178 P + + + +++ D LS+ +E+ V+ +I G +N +IA KM +S KTV + Sbjct: 127 VDPKVAGKLLSTFNRRREERDLLSRLTPREMEVLYWISQGLNNGEIARKMVLSEKTVKNH 186 Query: 179 KSRLMEKLECKSLMDLYTFAQRNKIG 204 S +++KL+ FA + + Sbjct: 187 VSHILKKLDLVDRTQAAVFAWKRGLA 212 >UniRef50_B8GAC9 Two component transcriptional regulator, LuxR family n=3 Tax=Chloroflexus RepID=B8GAC9_CHLAD Length = 213 Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 60/200 (30%), Positives = 109/200 (54%), Gaps = 5/200 (2%) Query: 4 IIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +++DDH + A +R LL + D+ ++ E + +A+ + TL+PD++++D+ + +G+ Sbjct: 5 LLVDDHAVLRAGLRLLLESQPDMVVVGEAEDSRTAITQATTLQPDLILLDLSLTNSSGLA 64 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 +++LR I++++ +D Y + AGA+G+V K+ +IAAI A G Y Sbjct: 65 AIQSLRAAAPQARILVLTMHDDEGYVRQALAAGAHGYVLKRAADAELIAAIRAVLRGELY 124 Query: 123 F-PFSLNRFVGSLTSDQQ---KLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTY 178 P R + + Q +SLS++E V+ + G +IA ++ +S KTV TY Sbjct: 125 IHPALTRRLLEDILPQPQPTNPWESLSEREREVLVLVARGYTAAEIAGQLNLSPKTVETY 184 Query: 179 KSRLMEKLECKSLMDLYTFA 198 ++R MEKL +S L FA Sbjct: 185 RTRGMEKLGLRSRAALVQFA 204 >UniRef50_C0N7Q7 Sigma-70, region 4 family n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N7Q7_9GAMM Length = 226 Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 62/198 (31%), Positives = 108/198 (54%), Gaps = 3/198 (1%) Query: 4 IIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +++DDH + R+LL K D +E++AE +G A + + +PDIV++D+ +PG +G++ Sbjct: 8 MLVDDHAIVREGYRSLLQKQDNLEVIAEACDGTEAYSQYKKYQPDIVVMDISLPGQSGLK 67 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAI-EAAKNGYC 121 +E +R+ I++ S + + AGA G+++K ++I AI E AKN + Sbjct: 68 AIERIRQFDAKAKILVFSMHQNPSFALQATRAGALGYITKSSDPEDLIRAIAEVAKNKHT 127 Query: 122 YFP-FSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKS 180 + + L +Q LD L+ +E ++R ++D K N DIAE + IS KTVS Sbjct: 128 LSADIAQALAMEKLGQEQSALDELTVREFEILRLLVDAKSNQDIAELLNISPKTVSNSHY 187 Query: 181 RLMEKLECKSLMDLYTFA 198 + +KL S ++L A Sbjct: 188 IIKKKLGVSSDIELTRLA 205 >UniRef50_Q01NH5 Two component transcriptional regulator, LuxR family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01NH5_SOLUE Length = 230 Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 106/203 (52%), Gaps = 7/203 (3%) Query: 5 IIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVL 64 + DDH + I L N + IL ++++G +AVQ +E L+PD I+D+ +P + G++ + Sbjct: 15 LADDHAIVREGIAALCAANGMRILGQVSDGMAAVQMIEELRPDFAILDLHMPQITGVEAI 74 Query: 65 ETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYFP 124 LR ++I+S + AGA+ ++ K +++ AI ++G Y Sbjct: 75 RRLRLNHCQAKLMILSISREEGTVMEALRAGADAYLLKDGPSRHLLDAISFVRDGGVYVS 134 Query: 125 FSLNRFVGSLTSDQQ-----KLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 L R G T ++ L +LS +E+ V Y+++G DIA+ + IS KTV TY+ Sbjct: 135 PML-RGAGLFTKSEKTRAEDPLAALSPREMEVFSYLVNGLRAKDIADLLEISPKTVDTYR 193 Query: 180 SRLMEKLECKSLMDLYTFA-QRN 201 + LM KL L+ L FA +RN Sbjct: 194 ASLMRKLNVHDLVGLVKFAIERN 216 >UniRef50_A1ASJ5 Two component transcriptional regulator, LuxR family n=2 Tax=Desulfuromonadales RepID=A1ASJ5_PELPD Length = 208 Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/206 (28%), Positives = 109/206 (52%), Gaps = 13/206 (6%) Query: 4 IIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQV 63 +I DDH + + +L + + + E +G A+ + E L+PD+V++D+ +P +NGI Sbjct: 6 LIADDHAIVREGLTMILESSGMIVAGEARDGRDALSQTEVLRPDVVVMDIAMPELNGIDA 65 Query: 64 LETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYF 123 + R +I++S N + AGA ++ K+ + ++ A+ A G CYF Sbjct: 66 TRMIHGRLPEVKVIVLSMHNTREHVFRAMQAGARAYLLKESAGSGLVDAVRAVIRGECYF 125 Query: 124 ------PFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 P ++ F + LDSLS +E V++ +++G+ + +IAE + +S K++ T Sbjct: 126 GEGVDAPQAVAGF-------KSPLDSLSLREREVIQLVVEGRTSAEIAELLSLSPKSIET 178 Query: 178 YKSRLMEKLECKSLMDLYTFAQRNKI 203 Y+SRLM KL ++ L FA ++ I Sbjct: 179 YRSRLMVKLGVGNIPALVKFALQHGI 204 >UniRef50_A0L9F1 Two component transcriptional regulator, LuxR family n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L9F1_MAGSM Length = 206 Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 61/206 (29%), Positives = 110/206 (53%), Gaps = 17/206 (8%) Query: 4 IIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 I+ DDH + + +LL ++EI+ E G A+Q + L PD+ ++D+ +PG+NG+ Sbjct: 5 IMADDHTIFRQGLAHLLSAHQELEIVGEAGRGDDALQLIRDLNPDVALLDISMPGLNGLD 64 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 V++ + + + +++++ +D AGA G+V K + ++ AI A G Sbjct: 65 VVKRVVEEKRPTRLLLLTMHDDPTLAIKAEQAGALGYVVKDNAFSELLDAILAVAAG--- 121 Query: 123 FPFSLNRFVGSLTSDQ----QKLD----SLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 RFV + +++ ++LD LS +E V+R + DG+ N +IA + IS KT Sbjct: 122 -----KRFVSEVVAEKVNELERLDDLPVQLSPREKEVVRLVADGQTNKEIARSLGISPKT 176 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQR 200 V T+++RLM KL + D+ +A R Sbjct: 177 VDTHRTRLMRKLNLHTTADVVRYAMR 202 >UniRef50_Q3A5X6 Transcriptional regulator, LuxR family n=2 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A5X6_PELCD Length = 223 Score = 100 bits (249), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 61/212 (28%), Positives = 115/212 (54%), Gaps = 12/212 (5%) Query: 4 IIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 + DDHPL +R L + DI+ + E ++G AV++++ PD+ +IDVD+PG++GI Sbjct: 10 FLADDHPLLRTGLRMSLSRFADIDFIGEASDGFKAVEKIKQNPPDVALIDVDMPGLSGIA 69 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG-YC 121 + LRK+ ++I+S+ +D + + AGA+G+V K +N + I A G + Sbjct: 70 AVRMLRKQYPDMTLLILSSYSDKHFIEEAMQAGADGYVLKSIDINELADLIRAFSCGEHP 129 Query: 122 YFPFSLNRFVGSLTSDQQKLDS----------LSKQEISVMRYILDGKDNNDIAEKMFIS 171 P+ ++ V S+Q++ L+++E ++ + G+ N +I+ +FIS Sbjct: 130 MSPYLMDLAVDWHASEQEEESPADKDDESDAFLTRREQQILSCLAQGQGNKEISNALFIS 189 Query: 172 NKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 +TV T+ + +KLE KS ++ A+ K+ Sbjct: 190 TETVKTHIKNIFKKLEVKSRLEAVIAAKEKKL 221 >UniRef50_A5FAZ3 Two component transcriptional regulator, LuxR family n=2 Tax=Bacteroidetes RepID=A5FAZ3_FLAJ1 Length = 219 Score = 100 bits (248), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 61/202 (30%), Positives = 109/202 (53%), Gaps = 11/202 (5%) Query: 4 IIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 ++ DDH I++LL + +IE++ E +G A++ V KPD++I+D+ +P + GI+ Sbjct: 8 VLADDHVFVRDGIKSLLENEANIEVVGEAIDGADALEVVTATKPDLLIVDIRMPNLTGIE 67 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 V+E LR + II++S Y AGA+G++ K + A+ A +G Y Sbjct: 68 VVEKLRSENNNVKIIMLSMHESEEYVLKSIKAGADGYLLKGSSKEEFLKALHAVSSGGKY 127 Query: 123 FPFSLNR-FVGSLTSDQQKLDS---------LSKQEISVMRYILDGKDNNDIAEKMFISN 172 F ++ + LT+ L+ ++K+E ++ +L GK N +IAE + IS Sbjct: 128 FSGDISSILISQLTNSTASLEPKQTLGEEMMITKREKEILTLLLSGKGNKEIAEALEISK 187 Query: 173 KTVSTYKSRLMEKLECKSLMDL 194 +T ++ LM+KL+ K+LM+L Sbjct: 188 RTAEVHRFNLMKKLKVKNLMEL 209 >UniRef50_A2SCN0 Two-component response regulator n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SCN0_METPP Length = 210 Score = 100 bits (248), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 108/208 (51%), Gaps = 4/208 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH + + LL +++DI ++AE +GG A+ + L+P +V+ID+ +PG+ Sbjct: 3 IRVMLVDDHAIVREGYKRLLELQSDIVVVAEAGDGGEALNQWRALRPAVVVIDLGLPGMG 62 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++++ LR+R + ++ S D + AGA G+V+K + ++AA+ G Sbjct: 63 GLELIARLRQRDEACRMLAFSMHRDAVWVAQALRAGALGYVTKSSAPSQLVAAVREVNQG 122 Query: 120 YCYFPFSLNRFVGSLTSDQQ--KLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 ++ V S D Q LS +E VMR ++ G+ +IA+ + +S KTV Sbjct: 123 RRVLSPDVSGEVASALLDPQDSAAHGLSPREFEVMRLLVGGRTPQEIAQSLSLSVKTVHN 182 Query: 178 YKSRLMEKLECKSLMDLYTFA-QRNKIG 204 ++ KL S +L A QR IG Sbjct: 183 VHYQIKSKLGTASDFELARMAWQRGWIG 210 >UniRef50_B8IGH6 Two component transcriptional regulator, LuxR family n=2 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IGH6_METNO Length = 232 Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 60/204 (29%), Positives = 107/204 (52%), Gaps = 9/204 (4%) Query: 4 IIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 ++ D HPL + +++LL + D+ I+ E G A++ L+PDI I+DV +PG++G + Sbjct: 12 LVADAHPLLLRGVQHLLRHEPDLSIIGEAISGAQALRLASDLQPDIAILDVALPGLHGSE 71 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 + + L +R +II+S + + AG G+V K+ ++ AI A + G Y Sbjct: 72 IRQRLAERAAGTRVIILSGTEEPICAQRALAAGVCGYVLKRSAPETLLHAIRAVRTGGLY 131 Query: 123 F-PFSLNRFV---GSLTSDQQKLD----SLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 P + V G + +D SL+ +E V+R I G N +IA K+ I+ K+ Sbjct: 132 LDPTIAGQLVPAGGPPATRTSGIDGFSASLTNREREVIRLIALGFTNKEIAGKLGITAKS 191 Query: 175 VSTYKSRLMEKLECKSLMDLYTFA 198 + TY++R EKL+ ++ + +A Sbjct: 192 IETYRTRASEKLDIRTRAKIVQYA 215 >UniRef50_C0N6H7 Response regulator receiver domain protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N6H7_9GAMM Length = 214 Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 102/200 (51%), Gaps = 3/200 (1%) Query: 4 IIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +++DDH + + + LL +N DI ++ E G A Q + PD++++D+ +PG+ G++ Sbjct: 8 MLVDDHAVVRSGLCRLLEQNTDISVVGEAESGEQAYQTYPEISPDVLVMDMSMPGMGGLE 67 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 + + R +I+ S + Y AGA G+V+K +++ A+ K+G + Sbjct: 68 AVRRILNRWSGAKVIMFSMHENATYAIQSLTAGAMGYVAKSGHAEDLVKAVREVKSGKSF 127 Query: 123 FPFSLNRFVG--SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKS 180 + V SL D L+ +E V R + +GK +DIA ++ I KTV+ Y++ Sbjct: 128 LSSDMAHKVALQSLAGDDNPTQRLTSREFEVFRLLAEGKLVDDIASRLNIGQKTVANYQT 187 Query: 181 RLMEKLECKSLMDLYTFAQR 200 L +KL S +DL A + Sbjct: 188 SLKQKLGIHSPVDLVRLAMK 207 >UniRef50_Q11VH7 Response regulator n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11VH7_CYTH3 Length = 220 Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 63/216 (29%), Positives = 119/216 (55%), Gaps = 13/216 (6%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 +N +++DDH + I+ L + + I+ E G ++ V+ LKPD+VI+D+ +P ++ Sbjct: 4 INILLVDDHTIVRDGIKATLKDQKNFHIVGEAANGLDGIEAVKQLKPDVVIMDITMPEMS 63 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ + + K+ ++I+S ++ Y +AGA G++ K + I AI A NG Sbjct: 64 GIEAADVISKKYPDSKVLILSMHDNETYILKSVEAGAYGYLLKDVDKDEFIKAITAVYNG 123 Query: 120 YCYFPFSLNR-FVGSLTSDQQKLDS-----------LSKQEISVMRYILDGKDNNDIAEK 167 YF +++ V S ++ DS L+K+E +++ I DGK+N +IA+ Sbjct: 124 DKYFNTAISSVLVSGYLSKVKQTDSIQSGYSNDEYELTKREKGILKMITDGKNNREIADG 183 Query: 168 MFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 + IS +T+ T+++ +M+KL+ K+ ++L A KI Sbjct: 184 LGISIRTIETHRANIMKKLKVKNAVELVRIAIDEKI 219 >UniRef50_A3HVU5 Transcriptional regulator n=1 Tax=Algoriphagus sp. PR1 RepID=A3HVU5_9SPHI Length = 209 Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 55/202 (27%), Positives = 112/202 (55%), Gaps = 6/202 (2%) Query: 4 IIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQV 63 +I DDHPL + +++ L++ +I++LA T+G A+ ++ KP + I+D+++P + G+++ Sbjct: 7 VIADDHPLLLKGLKDFLLEQEIDVLATSTDGQDALNQIIKHKPQLAILDLEMPNMTGLEI 66 Query: 64 LETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYF 123 +KR II+++ + + + +G++ K+ + + AI++ G +F Sbjct: 67 ASECKKRALPTKIILLTLHKEMYLYNQAKELNLSGYILKEFALGEVSQAIDSILAGKTFF 126 Query: 124 PFSLNRFVGSLTSDQQKLDS--LSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKSR 181 ++ + + SD K +S L+ E ++R I G+ IAEK+FIS +TV ++S Sbjct: 127 SETIFK---NQESDTLKTESSPLTPSEKKILRLIAQGESTKQIAEKLFISERTVDKHRSN 183 Query: 182 LMEKLEC-KSLMDLYTFAQRNK 202 ++ KL K L +AQ+N+ Sbjct: 184 MISKLNLEKKHNSLLLWAQKNR 205 >UniRef50_D1Y661 DNA-binding response regulator, LuxR family n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y661_9BACT Length = 216 Score = 99.4 bits (246), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 109/204 (53%), Gaps = 7/204 (3%) Query: 4 IIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 ++ DDH + + +R LL K D IE+ +G AV E L+PD+ ++D+ +P +NGIQ Sbjct: 6 LLADDHEMFLEGLRELLGKADGIELAGLARDGAEAVAAAERLQPDVALMDMTMPRLNGIQ 65 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 + + ++++S D AGA G+V K+ + AI+ NG Y Sbjct: 66 ATQKIAAGSPGTKVLVLSMHGDKNLIVESLKAGARGYVLKECSSQELCLAIQTVANGQYY 125 Query: 123 F-PFSLNRFVGS---LTSDQQKLD--SLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 P L+ +G LT ++++ LS++E+ V++ ++ G + IAE++ IS TV Sbjct: 126 LTPAILSTLIGDYLRLTENEEQGSDCPLSERELDVLKLLVKGCNAKQIAEQLSISKNTVD 185 Query: 177 TYKSRLMEKLECKSLMDLYTFAQR 200 T++ +++KL C S+ +L +A R Sbjct: 186 THRRHILDKLGCNSMAELTRYAIR 209 >UniRef50_Q3JFS6 DNA-binding response regulator, LuxR family n=92 Tax=Burkholderiales RepID=Q3JFS6_BURP1 Length = 282 Score = 99.4 bits (246), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 54/204 (26%), Positives = 112/204 (54%), Gaps = 4/204 (1%) Query: 4 IIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +I DDH L +R++L + E+ E + + + V + ++++D+ +PG NG++ Sbjct: 72 LIADDHALVRDGLRHILQNASGYEVAGEAFDSATTIALVRSTPAQVLVLDLSMPGRNGVE 131 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 +++ +++ + + I++++ + Y AGA+G+++K+ + ++ A+ +G Y Sbjct: 132 LIKQIKEEKPALRILVLTMHAEQQYAVRAFRAGASGYLTKESASSELVGAVTKVASGGVY 191 Query: 123 FPFSL-NRFVGSLTSDQQKLD--SLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 ++ RF SL + L LS +E V R I G+ IA+++ +S KTVSTYK Sbjct: 192 VSLAMAERFAQSLNEPAETLPHHRLSDREFDVFRRIASGQTLTQIADELCVSAKTVSTYK 251 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 +R++EK++ L +A R+K+ Sbjct: 252 TRILEKMQMPHEAALVRYALRHKL 275 >UniRef50_A1TVD4 Two component transcriptional regulator, LuxR family n=9 Tax=Burkholderiales RepID=A1TVD4_ACIAC Length = 209 Score = 99.0 bits (245), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 62/208 (29%), Positives = 116/208 (55%), Gaps = 6/208 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKP-DIVIIDVDIPGV 58 ++ ++ DDH + IR+ L + DI++ E G S ++ + P D++++D+++PG Sbjct: 2 IHVVLCDDHAVLRRGIRDTLTEAPDIQVTGE-AGGYSELREILRKAPCDVLLLDLNMPGR 60 Query: 59 NGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKN 118 +G++VL +L++ + +++VS + Y C AGA G+ +K +I A+ Sbjct: 61 SGLEVLSSLKETDSAIKVLVVSMYPEDQYALRCLRAGAQGYANKAGDPMELIEAVRTVMK 120 Query: 119 GYCYF-PFSLNRFVGSLTSDQQKL--DSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 G Y P SL +L ++LS++E+ + I GK +DIAE++ +S KTV Sbjct: 121 GRKYLTPEVAQMLADSLAQPAPELPHEALSERELQTLVKIASGKRLSDIAEELMLSPKTV 180 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKI 203 S Y+SR++EKL+ + +L +A RN++ Sbjct: 181 SVYRSRVLEKLKLSNNAELTVYAIRNQL 208 >UniRef50_A3U840 DNA-binding response regulator, LuxR family protein n=1 Tax=Croceibacter atlanticus HTCC2559 RepID=A3U840_9FLAO Length = 210 Score = 99.0 bits (245), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 65/202 (32%), Positives = 108/202 (53%), Gaps = 13/202 (6%) Query: 2 NAIIIDDHPLAIAAIRNLLIKNDI-EILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 N +I D HP+ I + ++L K++ +I+A+ + + PDI+I+D+D+P +G Sbjct: 3 NVLIADAHPIVIKGLASILKKDEAYKIVAKSNDENELKNHISLKSPDIIIMDIDMPNSSG 62 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 + +++TL++ III S + + Y GA+G+++K + + I AI+ G Sbjct: 63 LSIIKTLKQNNPEVRIIIFSHQPEELYALSAIRFGASGYINKSKSLKKIKTAIDQVARGG 122 Query: 121 CYFPFSLNRF--------VGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 Y L++F S T K +LS +EI V+ +I G N DIAE + I+ Sbjct: 123 IY----LSKFISEKISSKSSSKTGVVSKYRALSSREIEVLNFISKGLKNKDIAEMLKINE 178 Query: 173 KTVSTYKSRLMEKLECKSLMDL 194 KTVSTYK+RL +KL S+ L Sbjct: 179 KTVSTYKTRLQKKLNVDSVAGL 200 >UniRef50_D1U8L0 Two component transcriptional regulator, LuxR family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U8L0_9DELT Length = 208 Score = 99.0 bits (245), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 63/200 (31%), Positives = 111/200 (55%), Gaps = 7/200 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 M ++DDHP + A++ + I+N E+ T AVQ +ET +P++V++D+ + G +G Sbjct: 9 MRIFLVDDHPSILDALQTIFIRNSHEVCGTATNLEKAVQALETCEPNLVVVDLSLCGESG 68 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 + ++ L +R I+I S D + AGA G+VSK+E M ++ A++ G Sbjct: 69 LDLIAPLVERDIH--ILIYSMHEDAATLRRALQAGAIGYVSKREPMPILLEALQHILAGK 126 Query: 121 CYF-PF-SLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTY 178 Y P +LN S T Q +LS++E ++ + G+ N +IAE + IS +TV +Y Sbjct: 127 RYISPLVALNIESSSFTHTFQ---ALSEREQQILALLTKGETNAEIAESLEISIRTVESY 183 Query: 179 KSRLMEKLECKSLMDLYTFA 198 +R++ KL+ + + DL +A Sbjct: 184 YARMISKLDMQGMKDLRKYA 203 >UniRef50_A6GFX0 Two component transcriptional regulator, LuxR family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GFX0_9DELT Length = 220 Score = 99.0 bits (245), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 54/208 (25%), Positives = 116/208 (55%), Gaps = 8/208 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++++DH + ++ LL D+E++ E+ +G +AV+ E L PD+V++D+++P ++ Sbjct: 5 VRVLLVEDHTIVREGLKALLTATEDLEVVGEVADGRAAVEAAERLAPDVVVMDINMPKLD 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ +R++ + ++I+S + Y + AGA+G++ K G+++++ AI G Sbjct: 65 GVGATREIREKVNAPRVLILSMYDGEEYVRPAIRAGASGYLLKGSGLSDLVTAIREVAGG 124 Query: 120 YCYFPFSL-------NRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 +F ++ +R S+ DSL+K+E V+ + +GK + +IA+ + +S Sbjct: 125 NAFFSPTVAKILLQESRGERSVKEAPDPADSLTKREREVLTLVGEGKSSPEIAKILGLSV 184 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQR 200 KT+ ++ R+M KL ++ L A R Sbjct: 185 KTIEGHRGRIMAKLGVHNVAGLVRQAIR 212 >UniRef50_B4D6Y1 Two component transcriptional regulator, LuxR family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6Y1_9BACT Length = 220 Score = 99.0 bits (245), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 110/208 (52%), Gaps = 8/208 (3%) Query: 4 IIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 ++ DDH + +R LL +++D EI AE ++G +AVQ E L PDIVI+D+ +P +NG++ Sbjct: 10 LLADDHDIVRRGLRTLLELRSDWEICAEASDGRAAVQFAEDLAPDIVILDLSMPELNGLE 69 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 + +++++ + + AG G++ K + ++ A++A G + Sbjct: 70 AARRIAAHCPRSRMLMLTMHETEQFVREALAAGVRGYILKTDAGRDLANAVDALIRGETF 129 Query: 123 FPFSL------NRFVGSLTSDQQKLDS-LSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 F L F G + K + L+ +E +++ + +G+ N D+ + + IS KT Sbjct: 130 FASRLAATIYAAEFAGMGRRRRSKSQAGLTPREREILQLLAEGRKNRDVGKALNISVKTA 189 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKI 203 T+++R+M KL S+ DL +A RN + Sbjct: 190 ETHRARIMAKLGIDSVADLVRYAIRNGL 217 >UniRef50_A4CPM8 Regulatory protein, LuxR:Response regulator receiver n=4 Tax=Flavobacteria RepID=A4CPM8_9FLAO Length = 226 Score = 99.0 bits (245), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 61/206 (29%), Positives = 111/206 (53%), Gaps = 10/206 (4%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 +N +I D+HP+ I+ +L + DI++L ++ + Q + PD++I+++DIP +N Sbjct: 19 INVLIADNHPVVRLGIKQVLENDGDIQVLGDVGTTTALFQMLSKATPDVLILEMDIPEIN 78 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI L ++ ++I S +++ Y AGA G++SK ++ + A+ +G Sbjct: 79 GIATLRKMKDEYPEVQVLIYSGQSEDVYALSTIRAGARGYLSKSAELSYLADAVHKVSDG 138 Query: 120 YCYFPFSLNRFVGSLTSDQ--QK----LDSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 F N L D+ QK LS +E+ V++ + GK N ++A + ++ K Sbjct: 139 GM---FITNELAQRLAFDEGTQKPRRFFRKLSTREVEVLKMLASGKRNKEVALGLNLNEK 195 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQ 199 TVSTYK+RLM+KL +++DL A+ Sbjct: 196 TVSTYKARLMKKLNVDNMVDLLQQAK 221 >UniRef50_D2R948 Two component transcriptional regulator, LuxR family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R948_9PLAN Length = 223 Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 61/209 (29%), Positives = 110/209 (52%), Gaps = 20/209 (9%) Query: 4 IIIDDHPLAIAAIRNLLI-----KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGV 58 +I+DDHP A+R L + D+E+ E + G A++ V +PD+ +ID+ + Sbjct: 13 LIVDDHP----AVREALALRIGRQTDLEVCGEAADLGEALRLVAETQPDVAVIDISLKTG 68 Query: 59 NGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKN 118 GI +++ ++ RQ + +++ S ++ Y + AGA G+++K + + I+ I Sbjct: 69 CGIDLIKRIKDRQDTVRMLVWSTHSESLYAERALLAGALGYITKDQATDTIVEGIRRVLE 128 Query: 119 GYCYFPFS-----LNRFVGS----LTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMF 169 G Y + L R VG LT + LD+L+ +E+ V R I G+ IA+++ Sbjct: 129 GKVYLSDAMVETMLRRTVGGEQKHLT--RSPLDTLANRELEVFRLIGQGEKTTGIAKRLH 186 Query: 170 ISNKTVSTYKSRLMEKLECKSLMDLYTFA 198 +S KTV TY+ R+ +KL+ S +L +A Sbjct: 187 LSVKTVETYRDRIRQKLDLTSGTELAHYA 215 >UniRef50_B4T4T3 EsrB n=38 Tax=Enterobacteriaceae RepID=B4T4T3_SALNS Length = 212 Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 59/203 (29%), Positives = 106/203 (52%), Gaps = 3/203 (1%) Query: 4 IIIDDHPLAIAAIRN-LLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +++DDH + I I N LL +I+ + G +PDI+I+D+ +PG+NG+ Sbjct: 7 LLVDDHEIIINGIMNALLPWPHFKIVEHVKNGLEVYNACCAYEPDILILDLSLPGINGLD 66 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 ++ L +R + I++ +A + AGANG+V K ++AA++ Y Sbjct: 67 IIPQLHQRWSAMNILVYTAYQQEYMTIKTLAAGANGYVLKSSSQQVLLAALQTVAVNKRY 126 Query: 123 FPFSLNR--FVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKS 180 +LNR + L +D L+ +E V++ I +G N+ I+EK+ IS KTV T++ Sbjct: 127 IDPTLNREAILAELNADTTNHQLLTLRERQVLKLIDEGYTNHGISEKLHISIKTVETHRM 186 Query: 181 RLMEKLECKSLMDLYTFAQRNKI 203 +M KL+ + +L A+R ++ Sbjct: 187 NMMRKLQVHKVTELLNCARRMRL 209 >UniRef50_A1WBJ7 Two component transcriptional regulator, LuxR family n=30 Tax=root RepID=A1WBJ7_ACISJ Length = 239 Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 108/203 (53%), Gaps = 4/203 (1%) Query: 5 IIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQV 63 I+DDH + A +R L ++ D+ ++ E + G A+ V + D++++D+ +PG +G+ Sbjct: 35 IVDDHAIVRAGLRQFLSEHVDLRVVGEASNGREAIDLVRVHEIDVLVMDLSMPGQSGLDA 94 Query: 64 LETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYF 123 L LR + I+I+S + Y + GA+G+++K+ I+ AI G Y Sbjct: 95 LAMLRAKAPDMGILILSGYPEEHYAINLIRQGASGYLNKECEPKEIVEAIRTIALGRRYL 154 Query: 124 PFSLNRFVGSLTS---DQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKS 180 S+ + + D + LS++E V + G+ DIA+ + +S KTVSTY++ Sbjct: 155 TPSVADLLAQQLNRKDDAPPHEQLSEREFQVFLKLAKGETAGDIAKSLSLSVKTVSTYRT 214 Query: 181 RLMEKLECKSLMDLYTFAQRNKI 203 RLMEK+ S DL +A +NK+ Sbjct: 215 RLMEKMGLSSNSDLTYYALKNKL 237 >UniRef50_B0MVU6 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MVU6_9BACT Length = 216 Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 105/209 (50%), Gaps = 12/209 (5%) Query: 4 IIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 I++DDH L + +R LL + D I ++ E + G + + + D+V +D +PG+NG + Sbjct: 7 ILVDDHSLFRSGMRGLLDRYDGIRVVGEASTGEEFLAMLPATEADVVFMDFAMPGMNGAE 66 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 E + +I +S D Y AGA GF+ K M+ ++ AIE G Y Sbjct: 67 TTEKALALEPGLKVITLSMFGDENYYSRMVQAGAKGFLMKDSPMDEVLRAIETVAAGGTY 126 Query: 123 FPFSLNRFVGSLTSDQQKL--------DSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 F + R SL S Q + LS +EI ++ + G N +IA+++FIS +T Sbjct: 127 FCEEVLR---SLASRMQTAVSGYEGSDERLSTREIEILVCVCRGLSNQEIADELFISKRT 183 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 V +++ ++EK CK+ L +A R+ + Sbjct: 184 VDKHRANILEKTGCKNTASLVVYAVRHGL 212 >UniRef50_B7AAT6 Two component transcriptional regulator, LuxR family n=1 Tax=Thermus aquaticus Y51MC23 RepID=B7AAT6_THEAQ Length = 207 Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 60/203 (29%), Positives = 104/203 (51%), Gaps = 2/203 (0%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++++DH L + +R+LL + + ++ E A++ +E ++ D+ I+DV +P Sbjct: 2 IRVVLVEDHLLVRSGLRHLLEARGPVRVVGEAGSCREALELLEKVQADVAILDVSLPDGT 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI + + LR+R ++ +S D Y + AG G+VSK ++ A+ A G Sbjct: 62 GIALCQRLRERFPELRLLALSMHEDLEYVRGFLQAGGQGYVSKAAVDQELLDAVLAVARG 121 Query: 120 YCYF-PFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTY 178 Y P R L + + LS +E V+R + G + ++AEK+ IS KTV+TY Sbjct: 122 ERYLNPALAMRLAMELVRESAEEAPLSPREEEVLRLLAQGLSHKEVAEKLGISEKTVATY 181 Query: 179 KSRLMEKLECKSLMDLYTFAQRN 201 + R MEKL S +L +A R Sbjct: 182 RERGMEKLGLASRSELLRYAARK 204 >UniRef50_D2BDI1 Response regulator receiver protein n=8 Tax=Actinomycetales RepID=D2BDI1_STRRD Length = 227 Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 61/208 (29%), Positives = 105/208 (50%), Gaps = 4/208 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDHPL +R LL + E++ E +G A+ V +L PD+V++D+ +PGV Sbjct: 19 IRVLLVDDHPLLRHGLRALLEQVGGAEVVGEAGDGEEAIALVLSLNPDVVVMDLVMPGVT 78 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ TL R+ +++++ D AGA G+V K N+ IAA+ A G Sbjct: 79 GIEATRTLIDRRPDLGVLVLTMSEDDASVFAALRAGARGYVLKGADGNDFIAAVRAVARG 138 Query: 120 YC-YFPFSLNRFVGSLTSDQQ--KLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 Y P R LT+ + L+++E ++ + GK N +IA ++F+S KTV Sbjct: 139 EAVYGPAVARRIRRFLTTGPESGPFPELTQREREILDLLASGKSNAEIARRLFLSQKTVK 198 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKIG 204 + + + KL+ A+R +G Sbjct: 199 NHLTSIFAKLQVADRTQAVVRARRAGLG 226 >UniRef50_A1K960 Probable transcriptional regulator, LuxR family n=1 Tax=Azoarcus sp. BH72 RepID=A1K960_AZOSB Length = 209 Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 116/205 (56%), Gaps = 4/205 (1%) Query: 4 IIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +I DDH + +R L + +I+AE G +A++ V T D+V++D+ +P +NG++ Sbjct: 5 LIADDHAVVRGGLRQFLSSTEEFDIVAEAANGQTALELVRTSGCDVVLLDITLPDLNGLE 64 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 VL+ +++ + ++I S ++ + +AGA+G+++K I+AA+ G Y Sbjct: 65 VLKRIKRSKPDLPVLIFSMFSEDEFALPALNAGASGYLNKDSPPAQILAALHTVVAGARY 124 Query: 123 FPFSL-NRFVGSLTSDQQKL--DSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 SL R + S ++L ++LS +E++V+ + G I E+ +S KT+STY+ Sbjct: 125 VSPSLAERLLAGTMSPGKRLPHENLSPREMAVLLLLSKGVPLTRIGEQFHLSVKTISTYR 184 Query: 180 SRLMEKLECKSLMDLYTFAQRNKIG 204 +R++EKL+ S ++ + ++K+G Sbjct: 185 ARILEKLDLASNAEITRYVLQHKLG 209 >UniRef50_Q5HLK6 Oxygen regulatory protein nreC n=71 Tax=Firmicutes RepID=NREC_STAEQ Length = 218 Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/215 (30%), Positives = 108/215 (50%), Gaps = 12/215 (5%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIP-GV 58 M +I DDH + +L + D+E++A +G A Q+V +PD++I+D+ +P G Sbjct: 1 MKIVIADDHAVVRTGFSMILNYQEDMEVVATAADGVEAYQKVLEHRPDVLILDLSMPPGE 60 Query: 59 NGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKN 118 +G+ + + I+I++ +D Y H +GA G++ K +I A+ Sbjct: 61 SGLIATSKISESFPDTKILILTMFDDEEYLFHVLKSGAKGYILKNSPDEQLILAVRTVYQ 120 Query: 119 GYCYFPFSL-----NRFVGSLTSDQQKLDS-----LSKQEISVMRYILDGKDNNDIAEKM 168 G Y L N FV +D+ S LSK+E+ ++ I G N DIAEK+ Sbjct: 121 GETYVDMKLTTSLVNEFVNQSQTDEVSSSSDPFKILSKRELEILPLIAKGYGNKDIAEKL 180 Query: 169 FISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 F+S KTV +K+ +M KL KS +L +A + K+ Sbjct: 181 FVSVKTVEAHKTHIMTKLNLKSKPELVEYALKKKL 215 >UniRef50_B7GL14 DNA-binding response regulator, NarL family (REC-HTH domains) n=30 Tax=Bacillales RepID=B7GL14_ANOFW Length = 260 Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 60/200 (30%), Positives = 104/200 (52%), Gaps = 17/200 (8%) Query: 4 IIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 ++IDDH L I+ +L + D E++AE ++G A+ VE KPD+VI+D+++P VNG++ Sbjct: 40 VLIDDHKLFREGIKRILDFEQDFEVVAEGSDGDEALALVERYKPDVVIMDINMPHVNGVE 99 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 L + +II+S +D Y H GA G++ K+ + +I A+ G Y Sbjct: 100 ATRQLIEAYPDTKVIILSIHDDESYVMHALQTGAMGYLLKEMDADALIEAVRVVAEGGSY 159 Query: 123 FPFSLN--------RFVGSLTSDQQKLDS--------LSKQEISVMRYILDGKDNNDIAE 166 + R V ++K + L+++E V++ + DGK N IA+ Sbjct: 160 LHPKVTHNLVKEYRRLVAGEGGGKEKQNQDVCRPYHLLTRRECEVLQLLADGKSNKGIAD 219 Query: 167 KMFISNKTVSTYKSRLMEKL 186 ++IS KTV + S +++KL Sbjct: 220 ALYISEKTVKNHVSNILQKL 239 >UniRef50_C6VZM4 Two component transcriptional regulator, LuxR family n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VZM4_DYAFD Length = 214 Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 55/210 (26%), Positives = 113/210 (53%), Gaps = 7/210 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + I+ DDH + + + L + +I+I+A+++ G + ++ET+ PD++I+DV++P + Sbjct: 4 VRTILADDHEIFLDGLEKTLCEIEEIDIVAKVSRGNDVIYKLETISPDLLILDVNMPQKD 63 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+++L ++K I+++S D+ K + G G+V K G + AA+ + +G Sbjct: 64 GVEILSYIQKSSLKAKILVLSYYLDYALIKKVLNMGIMGYVPKDAGKEELHAAVRSIMDG 123 Query: 120 YCYFPFSLNRFVGSLTSDQQKLD------SLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 Y P S+ + + S D +L+K+E+ ++ + +IA+K+ +S Sbjct: 124 KPYLPDSVKEIIKTRESRPDPHDDFVSMYNLTKREVDILTEVAREFSTAEIADKLCLSEY 183 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TV TY+ ++ KL K++ L FA + K+ Sbjct: 184 TVETYRKSIIRKLAAKNIASLVNFAHKWKL 213 >UniRef50_Q023R1 Two component transcriptional regulator, LuxR family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q023R1_SOLUE Length = 214 Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 57/196 (29%), Positives = 102/196 (52%), Gaps = 5/196 (2%) Query: 7 DDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLET 66 DDH + ++ I+ LL + E++ G + ++ LKPD+V++DV +P +NGI Sbjct: 10 DDHAMILSGIKGLL-EGHYEVIGSEKNGRALIETAVRLKPDLVVLDVSMPILNGIDAARE 68 Query: 67 LRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY---- 122 ++K + +I ++ + Y + AGA+G+V K ++ AIE GY Y Sbjct: 69 IKKALPAAKLIFLTMHTNAIYLRKALHAGASGYVLKSGAAEELLTAIEEVCKGYIYVGPD 128 Query: 123 FPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKSRL 182 F + + S Q L +L+ ++ +++ + +GK N +I E IS +TV ++SRL Sbjct: 129 FGQDVIESIRSTGDSQGGLPALTDRQRHILQLLAEGKQNKEIGEIAHISVRTVEFHRSRL 188 Query: 183 MEKLECKSLMDLYTFA 198 M +L S+ +L FA Sbjct: 189 MSRLGAHSVAELTRFA 204 >UniRef50_B3PFS2 GacA n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PFS2_CELJU Length = 217 Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 62/207 (29%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 4 IIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +++DDH L I +L D +++ + G AV + LKPD+V++DV +PG+ G++ Sbjct: 5 LVVDDHDLVRMGIVRMLADIDGYQVVGDAKSGEEAVTKARILKPDVVLMDVKMPGMGGLE 64 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 + L + II V+A +D Y AGA G+V+K I AI G Y Sbjct: 65 ATKKLLTVNPAIKIIAVTACDDDLYPTRLMQAGAVGYVTKGADFTEITDAINKVTRGDLY 124 Query: 123 FP------FSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 +L F G+ + + + LS++E+ I +G+ NDIA +S KTV+ Sbjct: 125 MSNSIAQQLALRTFSGA-NNQESPFEKLSQRELQTAMLIANGQKVNDIANTFCVSPKTVN 183 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKI 203 +Y+ R+ EKL+ S ++L A ++ + Sbjct: 184 SYRYRIFEKLDINSDVELTLLAVKHNL 210 >UniRef50_Q04VJ6 Receiver component of a two-component response regulator n=4 Tax=Leptospira RepID=Q04VJ6_LEPBJ Length = 221 Score = 97.4 bits (241), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 62/208 (29%), Positives = 111/208 (53%), Gaps = 14/208 (6%) Query: 5 IIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVL 64 ++DDH + ++ +++ EI E + A+ ++ L PD+VI D+ +PG++GI ++ Sbjct: 10 LVDDHAILREGLK-MILSGQFEICGESGDAEKALDQIGKLNPDLVITDISMPGLSGIDLV 68 Query: 65 ETLRKRQYSGI-IIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYF 123 + LRK QY I II+S ++ Y + + G NG+V K + N+++ AIEA G Y Sbjct: 69 KNLRK-QYPNIRTIILSRHDNREYVQKLLELGINGYVLKDDAGNDLLRAIEAVHKGETYL 127 Query: 124 PFS-----LNRFVGSLTSDQQKLDS------LSKQEISVMRYILDGKDNNDIAEKMFISN 172 L+ FVGS ++ D+ LS +E +++ + +G N I + + IS Sbjct: 128 SPGITAHFLSGFVGSGKPGEENQDAKKAFSVLSDREREILKLVAEGNSNESIGKILGISP 187 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQR 200 TV +++ +M+KL + DL +A R Sbjct: 188 ATVKVHRANIMKKLNLHKVADLVMYAIR 215 >UniRef50_Q13QW9 Two component transcriptional regulator, LuxR family n=5 Tax=Burkholderia RepID=Q13QW9_BURXL Length = 220 Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 56/203 (27%), Positives = 104/203 (51%), Gaps = 3/203 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 ++ +++DDH + R LL + D+ + E + A QR L+PD+V++DV +PG + Sbjct: 6 ISVLLVDDHAVVREGYRRLLELNADVHVCGEAADAAQAYQRFCALRPDVVVMDVSLPGAS 65 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIE--AAK 117 GI+ + + R+ ++I S + + + DAGA G+V+K + ++ A+ A + Sbjct: 66 GIEAMRRMLAREPDARVLIFSVHEEAIFVRRALDAGALGYVTKASAPDVLVEAVRTIARR 125 Query: 118 NGYCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 GY S + + S+ LS +E V+R ++ G IAEK+ +S KTV+ Sbjct: 126 AGYLSPDISQALALRNAFSEGPPGRQLSAREFEVLRLLVQGYTLPSIAEKLGLSQKTVAN 185 Query: 178 YKSRLMEKLECKSLMDLYTFAQR 200 ++S + +K + + L A R Sbjct: 186 HQSVIRQKFGADNGVQLAQMASR 208 >UniRef50_B2UG05 Two component transcriptional regulator, LuxR family n=2 Tax=Ralstonia pickettii RepID=B2UG05_RALPJ Length = 194 Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 54/184 (29%), Positives = 110/184 (59%), Gaps = 6/184 (3%) Query: 4 IIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 + IDDHP+ + +I+ LL + ++++A +G +Q + + +P + I+D+++P ++G++ Sbjct: 12 VAIDDHPIVLESIQALLAGSPHLQLVATAADGAQGLQLIRSARPKLAIVDINLPNLDGLE 71 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 ++ +R ++ +++ SA+ + AGAN +V K E + + AA+ A GY Sbjct: 72 LVRRVRAQRRDIGLVVTSAQTTGNEARLAFLAGANAYVPKSEATSVLTAALLLAARGYLS 131 Query: 123 FPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKSRL 182 FP S +G S+ L +L+++E+ V + + +G N +IA+++ IS KTVST+K R+ Sbjct: 132 FPAS---AMGP--SEGAGLATLTQREMRVNQLLAEGHRNTEIAKRLGISPKTVSTFKHRI 186 Query: 183 MEKL 186 + K+ Sbjct: 187 LRKV 190 >UniRef50_A6W0B9 Two component transcriptional regulator, LuxR family n=1 Tax=Marinomonas sp. MWYL1 RepID=A6W0B9_MARMS Length = 213 Score = 97.1 bits (240), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 61/207 (29%), Positives = 111/207 (53%), Gaps = 9/207 (4%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGS-AVQRVETLKPDIVIIDVDIPGVN 59 + +I+DDH + I +L + + G A+ + + L PDI+++DV +PG+ Sbjct: 2 LKVLIVDDHDVVSQGISRVLQDVKGVEVVGVVHSGEEAIIQSKILLPDIILMDVHMPGIG 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ + +++ II +SA +D+ Y +AGA+G+++K + ++ AI+ G Sbjct: 62 GLGATKEIKRILPKTKIIALSALDDNLYPVKLLEAGASGYLTKGTNTSELLEAIQMVSKG 121 Query: 120 YCYFP------FSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 Y +L++F S+ L LS +E+ V + I+D K +N+IAE + +S K Sbjct: 122 EHYISKSIAQKMALSKF--SIDGQGSPLGQLSDRELQVAQMIVDCKKSNEIAEHLCVSPK 179 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQR 200 TVSTY++R+ KL +S ++L A R Sbjct: 180 TVSTYRTRIFTKLNIESDVELIRLAVR 206 >UniRef50_A3XI64 DNA-binding response regulator, LuxR family protein n=1 Tax=Leeuwenhoekiella blandensis MED217 RepID=A3XI64_9FLAO Length = 212 Score = 97.1 bits (240), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 61/201 (30%), Positives = 105/201 (52%), Gaps = 7/201 (3%) Query: 5 IIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVL 64 + D HP+ + + ++L EI+ +++G + +E PD+VI+++D+P + G+ + Sbjct: 6 VADHHPIIVDGLTHILKDTPHEIIDVVSDGKDLIPSLEEQVPDLVIMEIDMPNLQGLSAI 65 Query: 65 ETLRKRQYSGI-IIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYF 123 + LRK + GI I++ S + Y AGA G++ K + A+ G Y Sbjct: 66 KELRKL-FPGIKIMVFSTHPEGMYALSAIKAGAMGYIGKIAETQTVHKAVVQVARGGIYL 124 Query: 124 PFSLNRFVGSLTSDQQ-----KLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTY 178 +L + + S Q + LS +E V+ + GK N DIAE + I+ KTVSTY Sbjct: 125 NNNLVEMLSNTDSAQNNSLAYRYKKLSTRETEVLNMLSSGKRNKDIAESLDINEKTVSTY 184 Query: 179 KSRLMEKLECKSLMDLYTFAQ 199 K+RL++KL+ SL +L A+ Sbjct: 185 KTRLLKKLDAGSLAELIQQAR 205 >UniRef50_Q01NJ8 Two component transcriptional regulator, LuxR family n=2 Tax=Acidobacteria RepID=Q01NJ8_SOLUE Length = 224 Score = 96.7 bits (239), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 60/209 (28%), Positives = 104/209 (49%), Gaps = 9/209 (4%) Query: 4 IIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 ++ DDH L +R LL + D+E+ E AV + L+PD+V++D+ + G++ + Sbjct: 7 LLTDDHTLFRQGVRTLLAAEADMEVAGEAANAMDAVALAQQLRPDVVLMDIGMAGMSSFE 66 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 +RK + +I +S +D Y C D GANG++ K + +I AI + G Y Sbjct: 67 ATRLIRKERPEVKVIFLSMYDDEDYLAECVDMGANGYILKDSPADQLITAIREVQRGGSY 126 Query: 123 F-PFSLNRFVGSLT-------SDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 P L+R V + + +L+K+E +++ + +GK +IA +S KT Sbjct: 127 LSPRLLSRLVDDFRLQGRGGGTRSPRFGTLTKREREILKMLAEGKSVKEIAAFFELSVKT 186 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 V +K LM KL+ + L +A + KI Sbjct: 187 VEAHKFNLMRKLDIHNKAQLVQYAIQKKI 215 >UniRef50_UPI000182725E putative two-component response regulator n=1 Tax=Enterobacter cancerogenus ATCC 35316 RepID=UPI000182725E Length = 211 Score = 96.7 bits (239), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 55/201 (27%), Positives = 107/201 (53%), Gaps = 5/201 (2%) Query: 4 IIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQV 63 +++DDHP A++ LL K+ ++ + G + + ++ +PD++I+D+++ +G+ + Sbjct: 5 LLVDDHPAICFALKVLLEKHG-DMTVSTSTGENLLSQLHQQRPDLLILDLELKHADGLDL 63 Query: 64 LETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYF 123 L +++ I++ ++++ Y AGA GF++K + N+ GY F Sbjct: 64 LPRIKQHLPELNILVFTSQSAGIYALRTLHAGAQGFINKNMPLENVEPLCRLIMAGYQCF 123 Query: 124 PFSLNRFVGSLTSDQQKLDSLSKQ----EISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 P S+ +SLS + EI+V+ Y+ GK N +IA+ + +SNKT+STYK Sbjct: 124 PEGTLFKAASVNEKSDASESLSSRFSDREIAVLNYLKQGKSNKEIADLLMLSNKTISTYK 183 Query: 180 SRLMEKLECKSLMDLYTFAQR 200 +R+++K C L L + R Sbjct: 184 TRMLQKCGCDDLNQLISLVFR 204 >UniRef50_A9FM25 DNA-binding response regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FM25_SORC5 Length = 233 Score = 96.7 bits (239), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 105/208 (50%), Gaps = 12/208 (5%) Query: 5 IIDDHPLAIAAI-RNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQV 63 +IDDHP+ R L + D+ ++ + A++ + KPD+V++D++IP +GI++ Sbjct: 26 LIDDHPVVREGFARALSDEPDMVVVGQAGTAADALRETASCKPDVVLVDLNIPDRDGIEL 85 Query: 64 LETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYF 123 L LR + ++++S +D F AGA G++ K + +I I G Sbjct: 86 LGALRAQLPQAKLLVLSGYDDEFRVAEALRAGAQGYLVKTSKLEEVIEGIRRIATGGA-- 143 Query: 124 PFSLNRFVGSLTSDQQK--------LDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 P S + G++ +K LD+L+ +E V+R + G + A ++ IS KTV Sbjct: 144 PLS-SSIAGAVVRAMRKPASEGSGGLDALTPRERQVLRLLAAGVSTRETAARLTISPKTV 202 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKI 203 T++ R+ KL CKS ++L A R + Sbjct: 203 ETHRVRIYAKLGCKSAVELTRIAVRTGL 230 >UniRef50_A0M543 Two-component system response regulator n=3 Tax=Flavobacteria RepID=A0M543_GRAFK Length = 212 Score = 96.7 bits (239), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 59/198 (29%), Positives = 102/198 (51%), Gaps = 5/198 (2%) Query: 4 IIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +I D HP+ + ++ +L N +++ + G ++E PD++I+++D+P +NGI Sbjct: 5 LIADHHPIILEGVKCVLQNNPALQVTGRVGSGTQLFNQLEKDAPDVLIVELDLPQINGIN 64 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 + +++ +I S+ + Y AGA G++SK + AI G Y Sbjct: 65 AIRRIKQEFPEVKTLIFSSHPEEMYALSAIKAGAAGYISKHTDNETLEKAIYQVARGGIY 124 Query: 123 FPFSLNRFVGSLTSDQQ----KLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTY 178 S+ + S S + K LS +E V+ + GK N DIAE + I+ KTVSTY Sbjct: 125 LNRSITEKLNSGISRGKSLITKFKKLSTRETEVLNLLSSGKRNKDIAEALDINEKTVSTY 184 Query: 179 KSRLMEKLECKSLMDLYT 196 K+RL++KL+ ++ DL T Sbjct: 185 KTRLLKKLKVDNVADLIT 202 >UniRef50_P44845 Nitrate/nitrite response regulator protein homolog n=109 Tax=Gammaproteobacteria RepID=NARP_HAEIN Length = 208 Score = 96.7 bits (239), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 57/194 (29%), Positives = 104/194 (53%), Gaps = 7/194 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++IDDHPL I+ L+ + ++ E++A+++ G + PD++I+D+++ G++ Sbjct: 5 LKVLLIDDHPLMRRGIKQLVELDDNFEVVADVSSGTEGISVALQTSPDVIILDLNMKGLS 64 Query: 60 GIQVLETLRKRQYSGIIIIVS---AKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAA 116 G+ L+ LR I+I++ AKND + DAGA+G++ K + ++ I+ Sbjct: 65 GLDTLKGLRAEGVDARILILTVSDAKNDIYT---LIDAGADGYLLKDTEPDTLLEQIKRI 121 Query: 117 KNGYCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 G S+ + T + LDSL+ +E+ V+R I G N IA ++FIS +TV Sbjct: 122 AQGEVILSDSIKNLLLERTHEDNPLDSLTDREMGVLRQIATGLSNKQIAAQLFISEETVK 181 Query: 177 TYKSRLMEKLECKS 190 + L+ KL S Sbjct: 182 VHIRNLLRKLNVHS 195 >UniRef50_A1WT06 Two component transcriptional regulator, LuxR family n=1 Tax=Halorhodospira halophila SL1 RepID=A1WT06_HALHL Length = 216 Score = 96.3 bits (238), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 61/202 (30%), Positives = 101/202 (50%), Gaps = 4/202 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH L AI +L DI+I+A AV V +PD+V++D+ +PG+ Sbjct: 2 IRVVLADDHRLIRQAIDGMLRDIPDIQIVAHAENAEHAVAAVREQEPDVVLMDLQMPGMG 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + L + +I ++ Y H AGA G+V K + +I AI + G Sbjct: 62 GVEAIRRLYRSHPKVGVIALTVYQSGPYPAHALRAGAKGYVHKGADRDELIEAIRSVYLG 121 Query: 120 YCYFPFSLNRFVGSLTSD---QQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 Y + R V + D + D L+ +E V+ IL+G+ IA+ + +S KTVS Sbjct: 122 RRYICHEVARHVALNSLDGTGESPFDHLTPREFEVLMRILNGQRGTSIAKDLCLSPKTVS 181 Query: 177 TYKSRLMEKLECKSLMDLYTFA 198 TY+SR+ E+L ++ L A Sbjct: 182 TYRSRIFERLGVRNDAQLTRIA 203 >UniRef50_B5JUM2 Two component transcriptional regulator, LuxR family n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JUM2_9GAMM Length = 223 Score = 96.3 bits (238), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 108/200 (54%), Gaps = 3/200 (1%) Query: 4 IIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRV-ETLKPDIVIIDVDIPGVNGI 61 ++++D L A++ LL + I ++ E G SA+ E PD++++D+ +PG+ GI Sbjct: 5 LLVEDQDLVRYAVKGLLEGEGSICVVGECDSGESALSYCRENALPDVILMDLHMPGIGGI 64 Query: 62 QVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 121 + + + + I+I++ +++ KH + G G+++KK + AI G+ Sbjct: 65 EASHAILQEHPNARILILTGQSESPLPKHLMELGVYGYITKKSSPREMQQAISQVSAGHR 124 Query: 122 YFPF-SLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKS 180 Y R + LD+LS++E+ ++ I G N +I + M +S KT+STY++ Sbjct: 125 YLSQDEAQRLALGGSGASNPLDALSRREMELLIKIALGCTNREIQKHMQVSPKTISTYRT 184 Query: 181 RLMEKLECKSLMDLYTFAQR 200 RLMEKL+ KS ++L AQ+ Sbjct: 185 RLMEKLDAKSDVELARIAQQ 204 >UniRef50_Q39C19 Two component transcriptional regulator, LuxR family n=60 Tax=Betaproteobacteria RepID=Q39C19_BURS3 Length = 271 Score = 96.3 bits (238), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 59/207 (28%), Positives = 106/207 (51%), Gaps = 4/207 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKNDI-EILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 +N +++DDH + IR LLI + + E GG AV V+ + D++++D+ +P N Sbjct: 3 LNILLVDDHAIVRQGIRQLLIDRGVARDVTEAENGGDAVAAVDKQEFDVILLDISLPDTN 62 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+VL+ L+++ +++ S + Y AGA G++SK +I AI+ G Sbjct: 63 GIEVLKRLKRKLPRTPVLMFSMYREDQYAVRALKAGAAGYLSKTVNAAQMIGAIQQVAAG 122 Query: 120 YCYFPFSLNRFVG---SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 Y ++ + S ++ + LS +E + + GK DIA + +S KTVS Sbjct: 123 RKYVSPAMAEALAEYVSFENEPLPHEKLSDREYQTLCMLASGKRLTDIANTLSLSVKTVS 182 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKI 203 Y+SRL+EK+ + +L + N++ Sbjct: 183 VYRSRLLEKMRLSNNAELTFYVMSNRL 209 >UniRef50_B1Y743 Two component transcriptional regulator, LuxR family n=6 Tax=Bacteria RepID=B1Y743_LEPCP Length = 211 Score = 96.3 bits (238), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 55/202 (27%), Positives = 102/202 (50%), Gaps = 4/202 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 M I DDHP+ ++ LL + D + E + G + + D+ ++D +PG Sbjct: 3 MRVFIADDHPVVRQGLKQLLGAEADFSVAGEASSGHEVIDQCGRFAWDVAVLDYRMPGKG 62 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI +++ LR+R ++++S + Y AGA G+++K+ +++ AI G Sbjct: 63 GIDLIKELRQRFPDRPVLVLSVCPEDQYAMRVLRAGAAGYLTKESAPEDLVNAIRKVARG 122 Query: 120 YCYFPFSLNRFVG---SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 + +L + S D+ LS +E +M + GK +IA+++F+S T+S Sbjct: 123 GRFVSAALGEQLALSLSTGGDEPLHCRLSDREYQIMWLLASGKKVGEIAQQLFLSPNTIS 182 Query: 177 TYKSRLMEKLECKSLMDLYTFA 198 TY+ R++EKL+ KS +L +A Sbjct: 183 TYRKRILEKLDLKSNAELMRYA 204 >UniRef50_C9QGW5 Putative two-component response regulator n=1 Tax=Vibrio orientalis CIP 102891 RepID=C9QGW5_VIBOR Length = 210 Score = 95.9 bits (237), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 105/200 (52%), Gaps = 12/200 (6%) Query: 3 AIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSA---VQRVETLKPDIVIIDVDIPGVN 59 A++ID P+ AI ++ +D+ + ++ + S+ +Q + D+VI+DVD+ G + Sbjct: 6 ALVIDSQPIMREAIGQII--HDLSVSTQVYQASSSQFGLQILNNHPIDLVILDVDLQGSD 63 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G + + R Y G I+ +SA + GANG+++K E + + AI + G Sbjct: 64 GFEFVRRSRAHGYRGKILFISASRHPMFSNTAKQIGANGYITKMESTSMLKEAIVSVTRG 123 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 + F + Q++ LSK+E V Y+L G N I+E + +S+KT+STYK Sbjct: 124 FSVFK-------NEEGNTQRRHTKLSKRETIVFNYLLKGYTNKQISEILTLSSKTISTYK 176 Query: 180 SRLMEKLECKSLMDLYTFAQ 199 SR+++K + S+++L Q Sbjct: 177 SRILDKYKVDSIVELIRLQQ 196 >UniRef50_A8UE45 Two component transcriptional regulator, LuxR family protein n=1 Tax=Flavobacteriales bacterium ALC-1 RepID=A8UE45_9FLAO Length = 209 Score = 95.5 bits (236), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 110/204 (53%), Gaps = 4/204 (1%) Query: 4 IIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +I+D HP+ + L K D +++ L+ G + V + D++I +VD+P +NGI Sbjct: 5 LIVDSHPIVRTGLELFLNSKPDFKVIGNLSSGIEIFEFVRRNQVDVIISEVDLPELNGIT 64 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 L ++K S +++ S + + Y AGA+G+++K + I AA+ +G Sbjct: 65 ALRAIKKENKSINVLMFSHQPEEIYAISTLKAGASGYLNKTANVETIEAAVRKIHSGEVS 124 Query: 123 FPFSLN---RFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 ++ R+ + S + LS +E+ V++ + G+ N +IA+++ I+ KTVSTYK Sbjct: 125 LSEKMDKHLRYEDTRKSRSRMFKKLSTREVEVLKLLSIGRKNKEIAQELDINEKTVSTYK 184 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 +RL +KL +++DL A+ + + Sbjct: 185 ARLFKKLNVTNIIDLIHQAKHHNL 208 >UniRef50_B9L0W5 Nitrate/nitrite response regulator protein n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L0W5_THERP Length = 261 Score = 95.5 bits (236), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 57/213 (26%), Positives = 109/213 (51%), Gaps = 15/213 (7%) Query: 4 IIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +++DDHPL A+R L +++ ++AE AVQ+ E +PD+ ++D+ +PG+NG+Q Sbjct: 35 LVVDDHPLFRFAVRQFLDRHERFRVVAEAASAHEAVQQAELHRPDLALVDLRLPGINGLQ 94 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 V L+++ ++++SA + + GA F++K ++A +EA G Sbjct: 95 VTRLLKRQNGKLPVVLLSADENESWLLGALQVGAAAFLAKDSEPREMLAVLEAVVAGEDR 154 Query: 123 FPFSL-------NRFVGSLTS---DQQKLDS----LSKQEISVMRYILDGKDNNDIAEKM 168 P + R +G L + L+S L+ +E+ V+ + G N +IAE + Sbjct: 155 LPQQILDRPHLARRVLGELQRYVVGEAGLESPDAVLTVRELQVLDCVAQGMSNKEIAEAL 214 Query: 169 FISNKTVSTYKSRLMEKLECKSLMDLYTFAQRN 201 FI+ +TV + + ++ KL + +D+ A R Sbjct: 215 FITEQTVKNHMTSILRKLGAQDRVDVILAAVRQ 247 >UniRef50_Q12FM5 Two component transcriptional regulator, LuxR family n=3 Tax=Burkholderiales RepID=Q12FM5_POLSJ Length = 224 Score = 95.5 bits (236), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 58/202 (28%), Positives = 108/202 (53%), Gaps = 8/202 (3%) Query: 4 IIIDDHPLAIAAI-RNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +++DDHPL + R L ++ D+++ E A+ V P + IID+ + G +G++ Sbjct: 17 MMVDDHPLVREGMARFLNLQGDLDLCCEAGSVEEALAVVADCNPALAIIDISLNGESGLE 76 Query: 63 VLETLRKRQYSGIIII-VSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 121 +++TLR+R Y G+ ++ +S ++ + + AGANG++ KKE NI+ A+ G Sbjct: 77 LIKTLRRR-YPGLALLAISMHDESVFAERALRAGANGYLMKKEATGNILLAVRRVLAGDI 135 Query: 122 YFPFSLN-----RFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 Y +++ R + + LS++E ++ + G +A+K+ S KT+ Sbjct: 136 YLSAAMHSRLSQRLLAPQAGAPSPIAGLSEREFEILHLLGLGFGTRQVADKLNRSIKTIE 195 Query: 177 TYKSRLMEKLECKSLMDLYTFA 198 T+++ L EKL+ KS DL FA Sbjct: 196 THRASLKEKLQLKSGADLVRFA 217 >UniRef50_A3HV51 Two-component response regulator n=1 Tax=Algoriphagus sp. PR1 RepID=A3HV51_9SPHI Length = 214 Score = 95.5 bits (236), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 115/209 (55%), Gaps = 11/209 (5%) Query: 3 AIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGI 61 I++DDHP+ + I LL++ +I++L + T G SA + + D++I D+ +P ++G+ Sbjct: 6 TILVDDHPIVMEGIEMLLLEIPEIQLLGKFTNGKSAQEFLSVTAVDLIITDISMPELDGL 65 Query: 62 QVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 121 Q+ + +++ +II+S ++ Y + A A G++ K+ ++ A+ + Sbjct: 66 QLTKWVKQNHPETKVIILSMHDNDHYVQEIILADAEGYLLKENTSEELVNAVNRVLDDGI 125 Query: 122 YFPFSLNRFVGSLTSDQQK-------LDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 Y+ ++ VG L S+ Q L SLS++E+ V++ I+ +IA+K+FIS T Sbjct: 126 YYS---DQIVGKLRSNFQLQNKKHEILQSLSERELDVLQLIIQELTTQEIADKLFISRHT 182 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 V ++K L +K + SL+ L F+ N++ Sbjct: 183 VESHKKNLFKKTDQNSLVGLVKFSISNQL 211 >UniRef50_Q024Y7 Two component transcriptional regulator, LuxR family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q024Y7_SOLUE Length = 225 Score = 95.5 bits (236), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 62/203 (30%), Positives = 107/203 (52%), Gaps = 8/203 (3%) Query: 4 IIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +++DDH L +R +L + ++ ++ E G AVQ + PDIV++D+ +PG+NGI+ Sbjct: 6 VLVDDHKLVRDGVRMILERGSEFLVVGEAENGADAVQLCKKSSPDIVLMDIGLPGMNGIE 65 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 L + S +II+S +D +GA FV KK N ++ A+ G Y Sbjct: 66 ATTELLRHCPSVKVIILSMYDDENSVVSAIRSGARAFVLKKASSNELLDALRTVARGGSY 125 Query: 123 FPFSL-NRFV-----GSL-TSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 + +R + G L T D+ L+SLS +E+ V+R + +GK + DIA + + +TV Sbjct: 126 LSSQVSDRLLQRIQRGDLETHDRSPLESLSPRELQVLRLVAEGKTSKDIAVLLDLGLQTV 185 Query: 176 STYKSRLMEKLECKSLMDLYTFA 198 +Y+ +M+KL ++ L A Sbjct: 186 RSYRKTMMKKLGVNNVAGLTQLA 208 >UniRef50_B1ZT64 Two component transcriptional regulator, LuxR family n=2 Tax=Verrucomicrobia RepID=B1ZT64_OPITP Length = 274 Score = 95.5 bits (236), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 59/205 (28%), Positives = 107/205 (52%), Gaps = 10/205 (4%) Query: 5 IIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQV 63 ++DDHPL +R ++ + D+E++ E + +A + L+PD+VI D+ + G +GI++ Sbjct: 46 VVDDHPLMRMGLRAMINGEPDMEVIGEAADSATATAEIMKLRPDLVIADISLRGNSGIEL 105 Query: 64 LETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYF 123 ++ ++ +++VS ++ Y AGA +V K++ ++ AI A+NG + Sbjct: 106 IKNVKAFDPGIDVVVVSMYDESIYALRVLKAGARAYVMKQDVTTRVLDAIRRARNGQLFV 165 Query: 124 PFS-----LNRFVGSLTSD---QQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 LNRFV T D + SLS +E+ ++ I +G +IA K+F+S KTV Sbjct: 166 SERVATQMLNRFVDG-TEDGAADSPVSSLSDRELEIVNLIGEGLPTREIAAKLFLSIKTV 224 Query: 176 STYKSRLMEKLECKSLMDLYTFAQR 200 T++ + KL + L F R Sbjct: 225 ETHRVHIKRKLNLANATQLVQFCVR 249 >UniRef50_B6JD38 Two component transcriptional regulator, LuxR family n=1 Tax=Oligotropha carboxidovorans OM5 RepID=B6JD38_OLICO Length = 210 Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 59/206 (28%), Positives = 111/206 (53%), Gaps = 5/206 (2%) Query: 4 IIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 II DDH + +R +L + ND ++ E T G + R+ DIV++D+ +PG++GI Sbjct: 5 IIADDHTIFREGLRQILAEANDFTLVGEATNGDDLLVRLREAPCDIVLLDLSMPGISGIT 64 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 ++ R+ + II++S +H Y AGA+G+V+K + +IAAI G + Sbjct: 65 LVRAAREIAGAHRIIVLSMHEEHQYVVEALKAGADGYVTKNSASDQLIAAIRKVSQGELF 124 Query: 123 FPFSLNR--FVGSLTSDQQKL--DSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTY 178 + ++ + + + +L L+++E V ++ G + IA + +S KTVST+ Sbjct: 125 VSAAASQEAILREMRTSPTELPHTRLTRREREVFDMLVAGHKISRIARDLDLSIKTVSTH 184 Query: 179 KSRLMEKLECKSLMDLYTFAQRNKIG 204 K+ L+ K++ ++ DL +A R+ +G Sbjct: 185 KTNLLAKMDAETTADLVRYALRHDLG 210 >UniRef50_A9DM99 Transcriptional regulator, LuxR family protein n=1 Tax=Kordia algicida OT-1 RepID=A9DM99_9FLAO Length = 212 Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 112/204 (54%), Gaps = 4/204 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 +N II DDH + I +++LL+ + I+++ E ++G A++ +E +I ++D+ +P +N Sbjct: 7 LNIIIADDHQIVIDGLKSLLVAHPHIKVVGEASDGEEALKLIENNTVNIAVLDISMPKMN 66 Query: 60 GIQVLETLRKR-QYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKN 118 G++ + ++K+ Y I+I+ D F + + GA+G++ K G + A+E N Sbjct: 67 GVETTKIIKKKYPYIKILILTMHDGDEFIHE-LFEIGADGYILKNRGKEEFVEALETINN 125 Query: 119 GYCYFPFS-LNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 G Y LN + ++ + K +K+E V+R I+ ++I+ K+ I+N TV T Sbjct: 126 GEEYIKGKVLNVLLDAVRKPKSKTIQFTKREKDVLRLIVGDHTTSEISAKLNIANSTVET 185 Query: 178 YKSRLMEKLECKSLMDLYTFAQRN 201 ++ L+EK KS + L +A N Sbjct: 186 HRRNLIEKTGVKSSLGLVRYAVEN 209 >UniRef50_A1SKW0 Two component transcriptional regulator, LuxR family n=1 Tax=Nocardioides sp. JS614 RepID=A1SKW0_NOCSJ Length = 215 Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 98/188 (52%), Gaps = 3/188 (1%) Query: 4 IIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +++DDH L R +L + +D++++ + G A+ V L P +V++D+ +PG+NGI+ Sbjct: 9 LVVDDHTLHRDGTRRILEQYDDVDVVGDAASGEDALAMVNRLHPRVVLMDIRLPGMNGIE 68 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 +R+R ++IV+A +D Y + D GA G++SK ++ A+ A G Sbjct: 69 ATRRIRERHPDTRVLIVTAYDDEEYVRGAFDVGAAGYLSKTAPGRELVEAVRAVAGGNSV 128 Query: 123 FPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKSRL 182 +L L ++L+ +E +V+R + +G N IA ++ IS +TV + R+ Sbjct: 129 LQPTL--MAALLAKRSSPANTLTDRERAVLRLLAEGMHNKQIASRLGISARTVERHCDRI 186 Query: 183 MEKLECKS 190 KL S Sbjct: 187 YGKLGVTS 194 >UniRef50_Q2BNZ3 Transcriptional regulator, LuxR family protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BNZ3_9GAMM Length = 223 Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 61/215 (28%), Positives = 115/215 (53%), Gaps = 17/215 (7%) Query: 4 IIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPG----- 57 +++DDHPL A + LLI ++ IEI+ E G SA + + PD+VI+D+++P Sbjct: 8 LLVDDHPLVRAGFQRLLISDESIEIVGEADNGQSACEMYASHMPDVVIMDLNMPSDANTE 67 Query: 58 -----VNGIQVLETLRK---RQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNI 109 +NG LE +R+ +++++A + H +AGA GF++K+ + + Sbjct: 68 EMSNNLNG--GLEAIRRIISHDPKAKVLVLTAMEIDPFPAHVVNAGAKGFLTKRCAPDEL 125 Query: 110 IAAIEAAKNGYCYFPFSLN-RFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKM 168 + A++A G Y + R ++D L SL+K+E+ + + +G+ + +AE+M Sbjct: 126 LEAVKAIHAGEEYITEEIRLRITEGGSADGASLASLTKRELQIFSLLAEGRTVSIVAEEM 185 Query: 169 FISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 F+S KTV +++ + KL+ + +L A R+ I Sbjct: 186 FLSPKTVHAHRTNIFRKLKISNNSELVHLAIRHNI 220 >UniRef50_C4SW04 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Yersinia frederiksenii ATCC 33641 RepID=C4SW04_YERFR Length = 194 Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 67/191 (35%), Positives = 105/191 (54%), Gaps = 10/191 (5%) Query: 2 NAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGI 61 NA++ D HPL +R LL + + E ++R KP I+ +D+ P V+ I Sbjct: 5 NALVFDRHPLIRDTLRYLLEERSFTVYETDCER-ELIRRASEKKPTIITVDITSP-VSAI 62 Query: 62 QVLETLRKR--QYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 ++L + K S +++I S +H Y C AGA+G VSKK M + AAI+A + Sbjct: 63 EILISQLKAVAPQSKVLVITSLPTEH-YSSCCIRAGASGLVSKKVKMVCLNAAIDAVIHD 121 Query: 120 YCYFPFS--LNRFVGSLTSDQQK---LDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 Y +FP L G+ + +++K LD L+K+E V+ +L GK +AE + +S KT Sbjct: 122 YLFFPVRDLLVISEGAWSFNREKPNSLDGLTKREKYVLYKVLQGKSLTHMAEDLGVSVKT 181 Query: 175 VSTYKSRLMEK 185 VSTYKSR+++K Sbjct: 182 VSTYKSRILKK 192 >UniRef50_B1Y1Z3 Two component transcriptional regulator, LuxR family n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y1Z3_LEPCP Length = 235 Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 61/213 (28%), Positives = 111/213 (52%), Gaps = 14/213 (6%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKNDI-EILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 ++ +I+DDH + ++ +L ++AE + G A++ + D+ I+D+ +PG+N Sbjct: 13 LHILIVDDHVIVREGLQRILEATGAGWVVAEASSGFQALEVMRHQPIDLAIVDLSMPGMN 72 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ +++ +R ++++S + Y AGANG+V+K ++ A+ G Sbjct: 73 GLDLIKRIRTEFPRVRVLVLSMHAEEQYAMRAFKAGANGYVTKDGASAELVNAVRKVATG 132 Query: 120 YCYFPFSLNRFV-----GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 Y SL V G+ T+ LS +E+ V+R I+ G+ DIAE + +S KT Sbjct: 133 GAYVTASLAERVVLQLNGATTAPGHA--QLSDRELEVLRRIVAGERITDIAEALHLSVKT 190 Query: 175 VSTYKSRLMEKLECKSLMDL------YTFAQRN 201 VST+KSR+ EKL+ ++ L + AQR+ Sbjct: 191 VSTHKSRIQEKLQLPTMAALIRYGMAHGLAQRD 223 >UniRef50_B1WQK4 Two-component response regulator n=19 Tax=Cyanobacteria RepID=B1WQK4_CYAA5 Length = 247 Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 108/192 (56%), Gaps = 6/192 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 M +I++D PL + L ++ + EI+ + +G + VQ+ LKPD+V++D+ +P ++ Sbjct: 38 MRILIVEDDPLMQLGLEQALSEHPNFEIIGQAEDGYTGVQQALELKPDLVVMDIGLPRLD 97 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI + +++++ + ++++++ +GA+ + K + ++AAIEAA++G Sbjct: 98 GIAATKQIKEQEPNIHVVMLTSHTLQTEVVAALSSGADAYCIKGASLERLLAAIEAAQDG 157 Query: 120 YCYFPFSLNRFV-----GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 Y + R V Q + LS++E+ V++ I++GK NN+IAE +++S T Sbjct: 158 ATYLDPQIARLVLDNLKSPNPEPNQNIALLSERELEVLKLIVEGKSNNEIAEDLYLSTNT 217 Query: 175 VSTYKSRLMEKL 186 + T+ +M KL Sbjct: 218 IKTHVRGIMNKL 229 >UniRef50_B9XAW3 Two component transcriptional regulator, LuxR family n=1 Tax=bacterium Ellin514 RepID=B9XAW3_9BACT Length = 224 Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 56/202 (27%), Positives = 100/202 (49%), Gaps = 7/202 (3%) Query: 4 IIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +++DDHP+ L+ + D+ + A + A + +LKPD+ IID+ + +GI+ Sbjct: 16 LLVDDHPIMREGFTQLINNEPDLHVCAHVGNATKAFDSIGSLKPDLAIIDIALGSSSGIE 75 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 V++ + R + +++ +S + YG+ AGA G+V K E I+ AI G Y Sbjct: 76 VIKNIHSRWNNQLLMALSMHEESVYGERALRAGARGYVMKNETTEEIMRAIREVLRGEVY 135 Query: 123 FPFSLNRFV------GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 + V G ++ LS +E+ V + I G+ IA ++ +S KTV Sbjct: 136 LSKQMRSLVVQKFLNGEPAHGHFGVEQLSDRELEVFQLIGSGRRTGQIAAELHLSIKTVE 195 Query: 177 TYKSRLMEKLECKSLMDLYTFA 198 TY++ + EKL ++ M+L A Sbjct: 196 TYRAHIKEKLMLRNGMELVRHA 217 >UniRef50_A0R9S0 DNA-binding response regulator n=37 Tax=Bacillus RepID=A0R9S0_BACAH Length = 216 Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 55/207 (26%), Positives = 114/207 (55%), Gaps = 9/207 (4%) Query: 4 IIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +++DDH AIR++L ++D+ ++ E + G +++VE +PD +++D+++PG NGI+ Sbjct: 8 LVVDDHAFLRDAIRSILEDESDMNVVGEASSGDGVLEKVEACRPDCILMDINLPGKNGIE 67 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 E ++K + +++ + Y AGA+G++ K ++AAI G Sbjct: 68 ATELVKKNYPNCRVLVFTMYEHDEYLMDALQAGADGYLLKDSSSEQVVAAIRMLYRGDSV 127 Query: 123 FPFSLNRFVGSLTSDQQKL------DSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 + + + +T QQK+ + L+++E ++ ++ G N +IAE ++IS+KTV Sbjct: 128 IHPRMTKKL--ITYHQQKMKVESNENELTEREKEILFELVKGLSNKEIAEALYISDKTVK 185 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKI 203 + +++ +KL KS +A RN++ Sbjct: 186 IHINKIFKKLNVKSRSQAVIYAVRNQL 212 >UniRef50_B8CZJ8 Two component transcriptional regulator, LuxR family n=1 Tax=Halothermothrix orenii H 168 RepID=B8CZJ8_HALOH Length = 209 Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 99/187 (52%), Gaps = 2/187 (1%) Query: 5 IIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQV 63 ++DDHP + ++ L + IEI+ G A++ + L P++ ++D+ +PG+NGI+V Sbjct: 6 LVDDHPFVLQGLKAYLNTREGIEIVGTSGNGEKAIKEIAKLNPEVAVVDLRLPGLNGIEV 65 Query: 64 LETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYF 123 ++K+ +II+S+ N DAGA +V K ++ AI+AA+ G Sbjct: 66 TREIKKKNPGTEVIILSSFNKEDEVIEAIDAGALSYVMKDSRPEKLVEAIKAARRGEPVL 125 Query: 124 -PFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKSRL 182 P + + +K + L+ +E V+ ++ G N DIA+ + IS TV T+ S + Sbjct: 126 TPGVAKKIMKRAARKGRKTEPLTPREKEVLACLVRGNSNRDIAKTLCISETTVKTHVSNI 185 Query: 183 MEKLECK 189 ++KL+ K Sbjct: 186 LKKLDVK 192 >UniRef50_B9XL75 Two component transcriptional regulator, LuxR family n=1 Tax=bacterium Ellin514 RepID=B9XL75_9BACT Length = 234 Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 54/203 (26%), Positives = 110/203 (54%), Gaps = 8/203 (3%) Query: 4 IIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 ++ DDHP+ + + L IEI+ E +G V +V L P+IV++D+D+P ++G++ Sbjct: 22 LLADDHPVVRKGLGSCLNNLEHIEIVGEAVDGQETVSKVRELSPEIVLMDLDMPTMSGLE 81 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 + +R+ ++I+S + Y +GA G+V K + ++ AIE+ G + Sbjct: 82 ATKIIRREFPLVKVLILSIHTNKDYVLQIIKSGAQGYVLKDAPLTELVRAIESVHGGGAF 141 Query: 123 FP-----FSLNRFVGSLTSDQQKLDS--LSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 F L++++ T+ ++ +S L+ +E V+ I +G+ N ++A +M + +TV Sbjct: 142 FSPDISQIMLDQYLAEATNGEESGNSKKLTNRETEVLSMIAEGQSNKEMASRMGVGVRTV 201 Query: 176 STYKSRLMEKLECKSLMDLYTFA 198 T++ R+M KL+ ++ L +A Sbjct: 202 ETHRERVMNKLDIHNVAGLTKYA 224 >UniRef50_Q07MS7 Two component transcriptional regulator, LuxR family n=4 Tax=Bradyrhizobiaceae RepID=Q07MS7_RHOP5 Length = 210 Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/207 (28%), Positives = 109/207 (52%), Gaps = 4/207 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 M +I+DDHP+ + R L + +IEIL E + S + T +PD+ ++D+++PGV+ Sbjct: 1 MRVLIVDDHPIIASGCRALFAGDPEIEIL-EAHDAESGERGFVTERPDVCVLDINLPGVS 59 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G ++ + R+ II+ S +D + +AGA G+VSK ++ AI G Sbjct: 60 GFELARRILAREPGARIIMFSMNDDPAFAARAIEAGAKGYVSKAGDPCDLADAIREVGEG 119 Query: 120 YCYFPFSLNRFV--GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 Y + + + ++ S + +L L+ +EI ++R I G ++IA ++ S KT++ Sbjct: 120 GVYLAPATAKSIAFAAIGSPENRLAKLNAREIEILRLIAAGNSLSEIAWQVRASYKTIAN 179 Query: 178 YKSRLMEKLECKSLMDLYTFAQRNKIG 204 S + +KL +S +L A ++ +G Sbjct: 180 TSSLMRQKLGVRSSAELMRLAIQSGLG 206 >UniRef50_Q5NZZ3 Two-component system response regulator n=3 Tax=Betaproteobacteria RepID=Q5NZZ3_AZOSE Length = 210 Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 59/204 (28%), Positives = 111/204 (54%), Gaps = 4/204 (1%) Query: 4 IIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +I+DDH + + +R +L + D+ + E ++G SA+ ++ + K D++++D+++ G +G+ Sbjct: 5 LIVDDHTIFRSGLRRMLSDEADMHVADEASDGASALAKIRSGKFDVILMDINMAGRSGLD 64 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 LE+LR + +I++S + Y A AN ++SK ++AAI G Y Sbjct: 65 TLESLRAERPELPVIMLSMYPEEQYAVLALRARANAYLSKDVEPQELLAAIRHVVGGGRY 124 Query: 123 F-PFSLNRFVGSLTSDQQ--KLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 P S + + ++ + L+ +E+ VM I+ G D+ +M +S KTVSTY+ Sbjct: 125 VSPRSAANLLMQMDRAREGAPHEKLTAREMQVMMKIVRGMSLTDVGVQMCLSVKTVSTYR 184 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 R++EKL S +L +A RN + Sbjct: 185 MRILEKLSLSSNAELVQYAMRNGL 208 >UniRef50_A0LVS2 Two component transcriptional regulator, LuxR family n=35 Tax=Actinomycetales RepID=A0LVS2_ACIC1 Length = 303 Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 108/210 (51%), Gaps = 10/210 (4%) Query: 4 IIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 ++ DDH L + +L + DI+++AE ++G AV R PD+V++DV +P GI+ Sbjct: 90 LVADDHALFRRGLEMVLRQEPDIQLVAEASDGAEAVARAAETLPDVVLLDVRMPKRTGIE 149 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 +++ S II+++ ++ AGA G++ K+ ++ + AAI A G Sbjct: 150 ACAAIKEVCPSAKIIMLTISDEEADLYEAIKAGAMGYLLKEISIDEVAAAIRAVHGGQSL 209 Query: 123 FPFS-----LNRFVGSL----TSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 S LN F + Q L+++E+ V+R + G +N DIA+++FIS Sbjct: 210 ISPSMASKLLNEFASLIKRGDARHQVPAPKLTEREMEVLRLVAKGLNNRDIAKQLFISEN 269 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TV + ++EKL+ S M+ +A R K+ Sbjct: 270 TVKNHVRNILEKLQLHSRMEAVVYAVREKL 299 >UniRef50_C3BGJ6 Two component transcriptional regulator, LuxR n=5 Tax=Firmicutes RepID=C3BGJ6_9BACI Length = 201 Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 105/181 (58%), Gaps = 4/181 (2%) Query: 22 KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVSA 81 + ++++ E ++G A++ + L+PDI+I+D+ +P ++GIQVL ++ R +I+++ Sbjct: 12 RPSLKVVGEASDGLEALRLYDILRPDILILDISLPRLDGIQVLTEIKLRYEQAKVIVLTM 71 Query: 82 KNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYF-PFSLNRFVGSLTSDQQK 140 D Y +AGA+G+V K + AI++ +GY Y P ++ + L ++ + Sbjct: 72 HEDEDYVTLIMNAGASGYVPKAAVDEELYTAIDSVMDGYLYLRPKEISTMLKRLQNETES 131 Query: 141 LDS---LSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKSRLMEKLECKSLMDLYTF 197 + LS +E V+++++ G ++IA+++ IS KTV T+K+R++ KL +L + Sbjct: 132 RNPYVILSPREREVLQFLVKGFSLSEIAQELTISIKTVDTHKTRMLNKLNLSKKSELVQY 191 Query: 198 A 198 A Sbjct: 192 A 192 >UniRef50_C7LQH4 Two component transcriptional regulator, LuxR family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LQH4_DESBD Length = 222 Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 66/207 (31%), Positives = 106/207 (51%), Gaps = 10/207 (4%) Query: 4 IIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +IIDDHPL +R L + D+ ++ E ++ +TL PD+ +ID+ +P +GI+ Sbjct: 8 LIIDDHPLYRDGLRARLDTRPDLCVVGEAGTCAEGLRLTQTLAPDLAVIDISLPDGSGIE 67 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 + +R + ++IVS + AGA+G++SK+ G I+ AIE +G Y Sbjct: 68 LTREIRLARPDLPVLIVSMHAKLDFIAAAFQAGASGYMSKESGGEGILQAIETVLSGGQY 127 Query: 123 FPFSLNRFVGSLTSD-----QQKLD----SLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 SL+ V SD + +D SLS +E VMR + +G +IA K+F+S K Sbjct: 128 LDGSLSPSVLRRLSDISGRKAKTVDASYGSLSLREQQVMRLLAEGLTPEEIAAKLFVSRK 187 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQR 200 TV ++ +M KL KS + A R Sbjct: 188 TVLNHRYAIMTKLGIKSPVAFVRHAAR 214 >UniRef50_B8IYZ1 Two component transcriptional regulator, LuxR family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8IYZ1_DESDA Length = 223 Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 59/214 (27%), Positives = 103/214 (48%), Gaps = 14/214 (6%) Query: 4 IIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +++DDH L + +R+LL + ++ GG AV +L P ++++D+ +PG+NG++ Sbjct: 7 LLVDDHKLLMEGVRSLLAPYAHLRVVGMALAGGEAVALAASLTPHLMVLDLGMPGMNGVE 66 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 + + + + I++ + D + D G G V K E ++ AIE + G + Sbjct: 67 TARAVLEVRPATRILVYTGHEDQRWLPELIDLGIMGHVRKSEPPGVLLRAIENVRRGEIF 126 Query: 123 FPFS--LNRFVGSLTSDQQKLD-----------SLSKQEISVMRYILDGKDNNDIAEKMF 169 FS R L +Q +D +LS +E + R + DG IA + Sbjct: 127 LSFSDPGGRLAALLRERRQAVDESGGDGCGDLSALSPREKEIFRLLADGHSVKAIAGDLH 186 Query: 170 ISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 IS KTV T+K L+ KL+ S+ DL A R+ + Sbjct: 187 ISPKTVETHKYNLLTKLQAGSVGDLVKIAIRHGL 220 >UniRef50_A7N4M7 Putative uncharacterized protein n=11 Tax=Vibrio RepID=A7N4M7_VIBHB Length = 202 Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 60/204 (29%), Positives = 108/204 (52%), Gaps = 9/204 (4%) Query: 2 NAIIIDDHPLAIAAIRNLLIKNDIEI-LAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 N +IIDD PL A+ +L+ + + E T+ + V D+VI+DV + +G Sbjct: 3 NVLIIDDQPLYSEALASLVQTAFQSVNVVESTDSAEVMDIVRNQPVDLVILDVVLGDRDG 62 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 +++ + + Y G I+ +S+++ K + GA+GF++K E I+ AI + GY Sbjct: 63 MRLAKNILATGYQGKILFISSRDYSSLSKAAFEMGAHGFLNKNEAKATILDAIVSVTRGY 122 Query: 121 CYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKS 180 F + N+ GS+T LS +E V Y+ G N I+E++ +S KT+STYK+ Sbjct: 123 SVFKATHNQSSGSVT--------LSNREAMVFHYLAQGYSNKKISEQLSLSAKTISTYKT 174 Query: 181 RLMEKLECKSLMDLYTFAQRNKIG 204 R+++K +S+++L + + G Sbjct: 175 RILKKYHAESVVELLNTLPQEECG 198 >UniRef50_C9LUT0 DNA-binding response regulator UhpA n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LUT0_9FIRM Length = 216 Score = 93.6 bits (231), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 58/206 (28%), Positives = 110/206 (53%), Gaps = 4/206 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH + + LL + D ++AE ++G A+++ DI ++D+ +P + Sbjct: 8 LRILLADDHRVLRKGLSLLLSSEEDFSVVAEASDGEEALEKAAKTPVDIALLDLSMPHMG 67 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ L L+ Q + ++I++ ++ Y C AGANG++ K + A+ G Sbjct: 68 GLECLRRLKAMQPAVRVLILTMHSERQYVCECLRAGANGYLCKDTLDAELFRALRTVAAG 127 Query: 120 YCYFPFSLNRFV--GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 Y + G+L ++ +LS +E V+ I+ G + IA+K+++S KTVST Sbjct: 128 GRYLGEREAELLIDGALEEPEEP-AALSTREREVLELIVHGYSLSTIADKLYLSIKTVST 186 Query: 178 YKSRLMEKLECKSLMDLYTFAQRNKI 203 YK+RL++KL+C +L +A R+ I Sbjct: 187 YKTRLLQKLDCTQNSELVDYALRHNI 212 >UniRef50_C0BG71 Two component transcriptional regulator, LuxR family n=1 Tax=Flavobacteria bacterium MS024-2A RepID=C0BG71_9BACT Length = 209 Score = 93.6 bits (231), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 66/198 (33%), Positives = 107/198 (54%), Gaps = 8/198 (4%) Query: 4 IIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +++D HP+ + K D I++L ++ ++ DIVII++++ V+ +Q Sbjct: 5 VLLDPHPVVQKGFKTFFNKKDHIKVLGTFSKTQQLFDFLQKNTIDIVIIEMELKDVSAVQ 64 Query: 63 VLETLRKRQYSGI-IIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKN-GY 120 + L K Y I +I ++ + YG AGA GF+SK+ +I AIE + GY Sbjct: 65 TVRKL-KLLYPNISTLIFTSLRESVYGISILKAGAKGFLSKEISRETMIDAIEKVHHKGY 123 Query: 121 ---CYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 F +N+ V L + +LS +EI V++Y+++GK N +IA + I KTV+T Sbjct: 124 HITSNFANQINKNV-DLHRPRNAYGTLSSREIEVLKYLIEGKRNVEIAATLKIHQKTVNT 182 Query: 178 YKSRLMEKLECKSLMDLY 195 YKSRLM+KLE + DLY Sbjct: 183 YKSRLMKKLEVTNSADLY 200 >UniRef50_Q485W6 DNA-binding response regulator n=3 Tax=Alteromonadales RepID=Q485W6_COLP3 Length = 215 Score = 93.6 bits (231), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 107/200 (53%), Gaps = 1/200 (0%) Query: 5 IIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQV 63 I+DDHP+ ++ L +DI I+ +G A+ + LKPD++++D+ +P +NGI Sbjct: 13 IVDDHPMVQGGLKACLSFYDDIIIVGSTDDGSDALNKAIELKPDVILMDISMPTMNGIDA 72 Query: 64 LETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYF 123 E + ++ ++I+S ++ + K AGA G++ K I AI+A NG +F Sbjct: 73 TEIITEQLPETKVLILSMHSNPEFVKSAIQAGAVGYLLKDTTSEEIYYAIKAVANGKTHF 132 Query: 124 PFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKSRLM 183 S+ + + + + + L+ +E V+ Y+ GK + +IA+ + IS +TV ++ + Sbjct: 133 SSSIAKLLIDNPVNTNESEKLTTREQVVLSYLAKGKTSKEIAKILNISFRTVEAHRRNMK 192 Query: 184 EKLECKSLMDLYTFAQRNKI 203 KL SL L ++A ++ I Sbjct: 193 TKLGIHSLAKLISYAVKHGI 212 >UniRef50_Q67JS2 Two-component response regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67JS2_SYMTH Length = 211 Score = 93.2 bits (230), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 55/206 (26%), Positives = 111/206 (53%), Gaps = 5/206 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I+DDH L +++LL + D+E++ E G AV +L+PD+V++D +P V+ Sbjct: 3 IRVLIVDDHELLREGLKSLLSREEDMEVVGEAAGGREAVALCRSLRPDVVVLDARLPDVD 62 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++V L++ +++++ +D AGA G+V K ++ +I A G Sbjct: 63 GVEVCRQLQEEMPEVAVLMLTTFSDSDLVLGAVRAGARGYVVKDVLGMDLKRSIRAVARG 122 Query: 120 YCYFPFS----LNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 L + + S ++D+++ L++Q+++++R + G N +IAE+MF+S KTV Sbjct: 123 EVAMDPKVVGYLMQQMRSPSADKEERIPLNRQQLAIIRLVAQGYTNREIAERMFLSEKTV 182 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRN 201 Y + M ++ K+ ++ A +N Sbjct: 183 KGYLAEAMRRMGVKNRVEAAMVASKN 208 >UniRef50_D0L1Q4 Two component transcriptional regulator, LuxR family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L1Q4_HALNC Length = 212 Score = 93.2 bits (230), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 112/204 (54%), Gaps = 3/204 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH + A+ +L+ + I + +E G +A+ ++T D+V+ D+ +PG+ Sbjct: 2 IRVMLVDDHTMVRKALAHLIGSEQGIGVTSEADSGEAALALLKTETVDVVLCDIHMPGMG 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + ++ R +I V+A+ D + +AG +G+V+K +I AIE A++ Sbjct: 62 GLEAIRRIQARYPEIGLIAVTAEADAALARSVLEAGVHGYVTKDAPPQELITAIENARHK 121 Query: 120 YCYFPFSLNRFVG--SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 + + + + S+ ++LS +E V+ IL+GK N I++ + +S KTVST Sbjct: 122 IRFISSRIAQEIALQSMRKTADPFETLSGREQQVLMMILEGKSNQFISDALCVSPKTVST 181 Query: 178 YKSRLMEKLECKSLMDLYTFAQRN 201 YK RL EKL + ++L A ++ Sbjct: 182 YKVRLQEKLGVNNDIELLRLAVKS 205 >UniRef50_Q1IXN1 Two component transcriptional regulator, LuxR family n=10 Tax=Bacteria RepID=Q1IXN1_DEIGD Length = 221 Score = 93.2 bits (230), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 58/203 (28%), Positives = 104/203 (51%), Gaps = 3/203 (1%) Query: 4 IIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +++DDH + +R L + + IE++ E G A+ E L PD+VI+D+ +P ++GIQ Sbjct: 13 LLVDDHAVVRQGLRLFLSLDSQIEVVGEAANGEEALAAAERLHPDVVIMDLMMPVMDGIQ 72 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 LR++ +I +++ + DAGA G++ K + + AI AA G Sbjct: 73 ATRLLRRQHPDTEVIALTSTLEEHKVNGAIDAGAMGYMLKDASSDTLADAIHAAARGEVR 132 Query: 123 F-PFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKSR 181 P + R V + + + ++L+ +E+ V++ I G N DIA ++ TV T+ SR Sbjct: 133 LHPEAARRLVRDFRTPEMR-ETLTPKEVIVLQLIARGYSNRDIARDQGVTEATVKTHVSR 191 Query: 182 LMEKLECKSLMDLYTFAQRNKIG 204 L+ KL +S +A R+ + Sbjct: 192 LLGKLGLESRTQAALYALRHGLA 214 >UniRef50_C6BTX3 Two component transcriptional regulator, LuxR family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BTX3_DESAD Length = 217 Score = 93.2 bits (230), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 59/213 (27%), Positives = 108/213 (50%), Gaps = 11/213 (5%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH + +R+ L +DI+++ E G AV+ L PDI+++D+ +P ++ Sbjct: 5 IKVLLVDDHDIVRIGVRSFLGSFDDIKVVGEAANGQEAVEMTAELSPDIILMDMLMPVMD 64 Query: 60 GIQVLETLRKRQYSGIIIIVS--AKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAK 117 GIQ + +R R+ G II ++ A +D + AGA G++ K + ++ AI Sbjct: 65 GIQAIREIRDRKLPGRIIALTSFATDDKLF--PAIKAGAMGYLLKDSTPDELLEAIRRVH 122 Query: 118 NGYCYFPFSLNRFVGSLT------SDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFIS 171 G + R V S S+ D L+ +E+ ++ + GK N IAE+MF+S Sbjct: 123 RGEPSLAPDIARKVLSELSQPGEDSETPTPDPLTPRELDTLKLVAKGKSNKAIAEEMFVS 182 Query: 172 NKTVSTYKSRLMEKLECKSLMDLYTFAQRNKIG 204 TV T+ + ++ KL + ++ +A R I Sbjct: 183 EATVRTHMTSILSKLHLANRVEATLYALREGIA 215 >UniRef50_B8FDP3 Two component transcriptional regulator, LuxR family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FDP3_DESAA Length = 219 Score = 92.8 bits (229), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 54/207 (26%), Positives = 112/207 (54%), Gaps = 7/207 (3%) Query: 4 IIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +I +DH L +++L+ +++ +++ E G +A++ KPD++++D+ +P +NG+ Sbjct: 9 LITEDHALVRKGLKSLISSRSEFQVVGEADNGLAAIEMTRKCKPDLILLDLSMPKMNGLA 68 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 + L+K + I++++ Y GA+G++ K + + AI A +G Y Sbjct: 69 TMRQLKKERPEVKILVITMHASQDYLIPALKEGADGYLLKGDDPQELFMAIRAIMDGKAY 128 Query: 123 FPFSLN-RFVGSLTSDQQK-----LDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 L+ + + S+ + + L SL+++E V + + +G N IA+ +FIS KTV Sbjct: 129 LSSDLSGQLIHSVINPDTREAADPLASLTQREKEVFQLVAEGNTNQQIADLLFISPKTVD 188 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKI 203 +++ LM+KL+ S ++ FA +N I Sbjct: 189 KHRTNLMKKLDLHSAREVSNFALKNGI 215 >UniRef50_D1AAU8 Two component transcriptional regulator, LuxR family n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1AAU8_THECD Length = 220 Score = 92.8 bits (229), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 60/210 (28%), Positives = 103/210 (49%), Gaps = 7/210 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 + +I DDHP+ +R LL +E++ E G AVQ L+PD+V++D+ +PG NG Sbjct: 10 IRVLITDDHPVFRQGLRGLLEALGVEVVGEAESGPQAVQLAAELQPDVVVMDLHMPGGNG 69 Query: 61 IQVLETL-RKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 I+ T+ R G++++ ++D AGA G++ K+ G I A+ A G Sbjct: 70 IEATRTITRTSPRIGVLVLTMFRDDDSVFA-AMRAGARGYLLKESGAEEIARAVRAVAAG 128 Query: 120 YCYFPFSLNRFVGSLTSD-----QQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 + + R V + +D Q L+++E V++ I G+ N +IA+ +F+S KT Sbjct: 129 EAIYGPEIARRVLTYFADMPDPKQTAFPELTEREREVLQLIAQGRSNGEIAQTLFLSPKT 188 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQRNKIG 204 V + S + KL A+ +G Sbjct: 189 VRNHVSNIFMKLHVADRAQAIVLAREAGLG 218 >UniRef50_Q0EZ33 Regulatory protein, LuxR:Response regulator receiver n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZ33_9PROT Length = 217 Score = 92.8 bits (229), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 59/204 (28%), Positives = 103/204 (50%), Gaps = 6/204 (2%) Query: 5 IIDDHPLAIAAIRNLLIKNDI-EILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQV 63 ++DDH + R LL +D+ +++AE G A + E PDIVI+D+ +P ++G++V Sbjct: 11 LVDDHEVVRIGFRYLLEADDLMQVVAESASGKQACRDYEKWLPDIVIMDISLPDISGLEV 70 Query: 64 LETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYF 123 + + I+++S + + GA GFV K+ G +I+AI G Y Sbjct: 71 MRRILLAHPEARILMLSMHSG-MVAERAMQMGARGFVCKRSGARLLISAIHEVMAGRRYL 129 Query: 124 PFSLNRFVGSLTSDQQKL----DSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 + L S + L SL+++E+ V + DG+ +DIA + +S KTV +++ Sbjct: 130 DDETGVQLPLLHSASETLKPLPSSLTRRELEVCLLLTDGRSVSDIAAALHLSEKTVYSHR 189 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 +MEKL ++ +L A R I Sbjct: 190 QHIMEKLGVATMAELVQVATRMGI 213 >UniRef50_Q1YTG7 Regulatory protein, LuxR:Response regulator receiver n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YTG7_9GAMM Length = 214 Score = 92.8 bits (229), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 60/212 (28%), Positives = 112/212 (52%), Gaps = 16/212 (7%) Query: 4 IIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +++DDH + ++ +LI++ +L E + A+Q+V +V++D+ +PG +G+ Sbjct: 5 LLVDDHAVVRNGLKQMLIEHLGSVVLGEANDAIEAMQQVRKQDWGLVVLDIRLPGRSGVD 64 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 VL+ ++ + ++I+S+ + Y AGA G++SK II A++ A G Y Sbjct: 65 VLKQIKSEKPHLPVLILSSYPESQYAVRLIQAGAAGYISKDSEETEIIKAVKTAAAGGRY 124 Query: 123 FPFSLNRFVGSLTS-----------DQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFIS 171 +N VG L + D +SLS +E + + GK DIAEK+ +S Sbjct: 125 ----INEIVGGLLANTMSRSFSNADDLSLYESLSDREYQIFLELASGKRAKDIAEKLQVS 180 Query: 172 NKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 KTV+T++SRLM+K+ + +L +A ++ + Sbjct: 181 AKTVATHRSRLMQKMGFSTNAELILYANKSGL 212 >UniRef50_A8GBA0 Two component transcriptional regulator, LuxR family n=4 Tax=Enterobacteriaceae RepID=A8GBA0_SERP5 Length = 213 Score = 92.8 bits (229), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 57/194 (29%), Positives = 104/194 (53%), Gaps = 9/194 (4%) Query: 4 IIIDDHPLAIAAIRNLLIKNDIE-ILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +++DDHP+ A+ LIK+ +L + + A+ ++ +VI+D+ +P V+G+Q Sbjct: 17 LLVDDHPVVHVALEAALIKSSRSYVLQAVEDDVQALAQLAAADFALVILDIGLPQVDGLQ 76 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 +L+ +R+ I+I +A+ + Y + AGANGFV K + ++ AIE G Sbjct: 77 LLKKIRRHYPQQSILIYTAQEEEIYARMAYAAGANGFVHKGSRLEQLVLAIETVLAGELS 136 Query: 123 FPFSLNRFVGSLTSDQQKLDS--LSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKS 180 FP ++ + Q + L+ +E+ ++ + G N IAE + ISNKTVST+K Sbjct: 137 FP------AAAMAEETQPTEGSLLTPKELQILGLLSKGLSNLQIAEMLSISNKTVSTHKK 190 Query: 181 RLMEKLECKSLMDL 194 ++ K +L++L Sbjct: 191 NILRKTGASNLLEL 204 >UniRef50_C5V5K1 Two component transcriptional regulator, LuxR family n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V5K1_9PROT Length = 211 Score = 92.8 bits (229), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 55/204 (26%), Positives = 111/204 (54%), Gaps = 4/204 (1%) Query: 4 IIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 I+ DDH L A + L IE++ E G +++++ + D+V++D+D+PG NG Sbjct: 6 IVTDDHELVRAGLLQLFEGAPGIEVVGEAVNGEELMRKLQATQVDLVLLDLDMPGENGAN 65 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAI-EAAKNGYC 121 ++E +R+ +I+I+SA ++ AGA+G++ K ++ AI + G Sbjct: 66 LIERIRRHYPDLLILILSAHDEIKVVSRAVQAGASGYICKDCSPKTLLEAIHKVVATGKY 125 Query: 122 YFPFSLNR--FVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 P + ++ L LS +E + R +++G N+DI+ ++FIS++TVS +K Sbjct: 126 LSPLMAEELAYTSAIPQANNSLALLSSREQEIFRLLVEGLSNDDISRQLFISDRTVSAHK 185 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 L+ KL K++++L ++ ++++ Sbjct: 186 INLLNKLGLKNVVELVHYSIQHQL 209 >UniRef50_Q1H354 Two component transcriptional regulator, LuxR family n=4 Tax=Proteobacteria RepID=Q1H354_METFK Length = 213 Score = 92.8 bits (229), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 54/203 (26%), Positives = 103/203 (50%), Gaps = 3/203 (1%) Query: 4 IIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +++DDH + + +R LL +ND +E++AE G A Q PD++++D+ +PG+ G++ Sbjct: 8 MLVDDHEVVRSGLRRLLEQNDGVEVIAEADSGEQAYQFYGEHMPDVIVMDMSMPGMGGLE 67 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 L + R +II S + + AGA +V+K ++++ A+ G Y Sbjct: 68 ALRRIIARYPQARVIIFSMHENAAFASQALGAGARAYVAKSGAADDLVQAVREVAQGKGY 127 Query: 123 FPFSLNRFVG--SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKS 180 + + + +L+ LS +E V R + GK +I+ + IS KTV+ Y++ Sbjct: 128 LSPGIAQQIALQTLSGSDDPTRLLSAREFEVFRLLAAGKGVEEISTILKISQKTVANYQT 187 Query: 181 RLMEKLECKSLMDLYTFAQRNKI 203 L +KL S ++L A ++ + Sbjct: 188 LLKQKLGITSPIELVRLAIKHGV 210 >UniRef50_Q1H353 Two component transcriptional regulator, LuxR family n=1 Tax=Methylobacillus flagellatus KT RepID=Q1H353_METFK Length = 212 Score = 92.8 bits (229), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 55/199 (27%), Positives = 99/199 (49%), Gaps = 2/199 (1%) Query: 4 IIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQV 63 ++ DDH + + +R LL +++AE G A + PD+ I+D+D+PG+ G++ Sbjct: 6 LLADDHAVVRSGLRILLENAGYQVIAEAESGERACTLWQEHHPDLGILDLDMPGIGGLET 65 Query: 64 LETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYF 123 L + R + +II S ND+ Y AGA G+V K + ++ A++ G Y Sbjct: 66 LHRIIARDRNARLIIFSMHNDNIYAARSMQAGARGYVVKTDAPEILLEAVKQVLRGGRYI 125 Query: 124 PFSLNRFVG--SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKSR 181 L + + + + L+ LS +E V R I +G + IAE++ I KT + +++ Sbjct: 126 GHELAQHLAMDRFSPSENPLEKLSPREFEVFRRIAEGISLSGIAEELHIGYKTAANIQTQ 185 Query: 182 LMEKLECKSLMDLYTFAQR 200 + +KL ++ L A R Sbjct: 186 VRQKLNVQTTGQLVHIAIR 204 >UniRef50_A0NNP3 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NNP3_9RHOB Length = 205 Score = 92.8 bits (229), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 61/199 (30%), Positives = 107/199 (53%), Gaps = 3/199 (1%) Query: 4 IIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 ++ DDH L IR L K D+E++ E T G A+ L+PD++++DV +P +NG++ Sbjct: 1 MLADDHELVRDGIRARLQKVADLEVVGEATNGREALTLAHDLRPDVLLMDVSMPVMNGLE 60 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 +RK ++I+S ++ Y + AGA G++ K +I AI + +G Y Sbjct: 61 AATQMRKLLPEIAVLILSVYDNPEYVRGVVQAGARGYILKDISAAEMITAITSVASGGYY 120 Query: 123 FPFSLN-RFVGSLTSDQ-QKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKS 180 F ++ VG+ TS + L+ +E V+ I G+ N ++A+++ IS +TV +++ Sbjct: 121 FSSAVGPTLVGAGTSAPVEDPYGLTDRERQVLTAIARGQPNKEVAKELGISVRTVESHRL 180 Query: 181 RLMEKLECKSLMDLYTFAQ 199 L EK+ K+ LY AQ Sbjct: 181 NLREKVGNKNAAQLYKVAQ 199 >UniRef50_C6VTD0 Two component transcriptional regulator, LuxR family n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VTD0_DYAFD Length = 212 Score = 92.4 bits (228), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 65/203 (32%), Positives = 112/203 (55%), Gaps = 12/203 (5%) Query: 2 NAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGS---AVQRVETLKPDIVIIDVDIPGV 58 N +I++D+ + A + L+ D+ A + E G+ A+ + D+VI+D+ IP Sbjct: 3 NILIVEDYQIIRLATKILV--QDLYKEATIHEAGTFGAALAALTARMHDLVILDIQIPEG 60 Query: 59 NGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEA-AK 117 G +++ LR Q + I+I SA + YG H +GANGF+SK + I+AAI + ++ Sbjct: 61 QGFEMIAALRAVQKNVPILIFSAIEERIYGIHYLRSGANGFISKSADTDEILAAIRSVSE 120 Query: 118 NGYCYFPFSLNRFVGSL-----TSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 G P + L SD LD LS +EI++M +++G +IA K+ ++ Sbjct: 121 TGRYVSPRIKVELLNQLDKHNYQSDNPLLD-LSAREITIMDMLIEGFWIKEIASKLDLTE 179 Query: 173 KTVSTYKSRLMEKLECKSLMDLY 195 +VSTYK+RL EKL+ +L++++ Sbjct: 180 SSVSTYKARLFEKLQVTTLIEMF 202 >UniRef50_B9QSJ5 Response regulator receiver domain protein n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9QSJ5_9RHOB Length = 212 Score = 92.4 bits (228), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 62/202 (30%), Positives = 107/202 (52%), Gaps = 3/202 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH L IR L K +IE++ E T G AV+ L+PD++++DV +P +N Sbjct: 5 IRVLLADDHALVRDGIRARLNKVPEIEVVGEATNGREAVKLAHELRPDVLLMDVSMPVMN 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ +RK ++I+S ++ Y + AGA G++ K +I AI + +G Sbjct: 65 GLEAAAEVRKSFPEIAVLILSIYDNSEYVRGVVQAGARGYILKDISAPEMITAISSVASG 124 Query: 120 YCYFPFSLN-RFVGSLTSDQ-QKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 YF ++ VG+ TS + L+ +E V+ I G N ++A+ + IS +TV + Sbjct: 125 GYYFSSAVGPTLVGTATSAPIEDPYGLTDRERQVLTAIAKGLPNKEVAKSLGISVRTVES 184 Query: 178 YKSRLMEKLECKSLMDLYTFAQ 199 ++ L EK+ K+ LY AQ Sbjct: 185 HRLNLREKVGNKNAAQLYKVAQ 206 >UniRef50_Q2RYV1 Two-component response regulator n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2RYV1_SALRD Length = 229 Score = 92.4 bits (228), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 57/206 (27%), Positives = 108/206 (52%), Gaps = 15/206 (7%) Query: 4 IIIDDHPLAIAAIRNLLI-----KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGV 58 +++D HP AIR +L + ++E+ AE A+ VE PD+V++++ + Sbjct: 13 VVVDKHP----AIREVLRSRIEGRPEMELEAESANSEDALALVEQHDPDVVVVEISLGDA 68 Query: 59 NGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKN 118 +G+ +++ +R I++ S N+ Y + +AGA+G+V K + ++ AIE Sbjct: 69 DGLTLIQEIRSTVPEVRILVFSKYNEDLYAERAVEAGASGYVMKTKPTEEVMRAIELVSE 128 Query: 119 GYCYFPFS-----LNRFV-GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 G + L+R V GS ++ L+ L+ +E++V R I +G IA+++ ++ Sbjct: 129 GQVFLSRHVSSRILSRLVRGSGDTETSPLEKLTDRELTVFRKIGEGHSVRQIADQLDLNR 188 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFA 198 KT+ TY+ R EKL +++ DL A Sbjct: 189 KTIETYRRRAKEKLGHETVEDLLRHA 214 >UniRef50_B8CN77 Nitrate/nitrite DNA-binding response regulator, putative n=2 Tax=Shewanella RepID=B8CN77_SHEPW Length = 206 Score = 92.4 bits (228), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 59/200 (29%), Positives = 112/200 (56%), Gaps = 4/200 (2%) Query: 1 MNAIIIDDHPLAIAAIR-NLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDHPL +R L + +DIE+LAE G A++ + + D+V+ D+++P ++ Sbjct: 2 IRVLLVDDHPLFREGLRYRLSLDSDIEVLAEADNGQQALEILNKMPVDLVLTDINMPQMD 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ +LE +++++ S ++++S ++ Y GA+G++ K +I AI+ G Sbjct: 62 GMYLLELIKEQELSCKVVMLSMHDNKEYIMATMRYGADGYILKDVPGKELIEAIKKVAAG 121 Query: 120 YCYFPFS-LNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTY 178 YF +N L S +Q L ++++E V+R I G +N IA++M +S +TV T+ Sbjct: 122 KRYFSADVINTLSQELASGKQAL--VTQREQLVLRLISLGMNNKRIAQEMDVSVRTVETH 179 Query: 179 KSRLMEKLECKSLMDLYTFA 198 K + +KL S L +A Sbjct: 180 KRNIKQKLMIDSTAGLVRYA 199 >UniRef50_B4D2X8 Two component transcriptional regulator, LuxR family n=2 Tax=Chthoniobacter flavus Ellin428 RepID=B4D2X8_9BACT Length = 242 Score = 92.4 bits (228), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 104/206 (50%), Gaps = 15/206 (7%) Query: 4 IIIDDHPLAIAAIRNLLI-----KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGV 58 +++DDHP AIR + + D+ E + A++ + L PDI +ID+ +PG Sbjct: 26 LLVDDHP----AIRRGMAAIIDEEPDLTTCGEASTAPMALEAMRRLNPDIAVIDISMPGT 81 Query: 59 NGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKN 118 NG+++++ + Q I+++S ++ Y AGA G+V K E + ++ + Sbjct: 82 NGVELIKLMLAEQPGLQILMLSMHDESVYALRALRAGAKGYVMKGEALECVLTGLRKVGE 141 Query: 119 GYCYF-PFSLNRFV-----GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 G Y P +R + ++ +D LS +E V+R + G + +IAE++ +S Sbjct: 142 GEIYVSPKFSDRLIFKTIQSTIAGVASPVDKLSDREFEVLRLLGRGFGSREIAEELSLSV 201 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFA 198 KTV T+++ + EKL K ++ FA Sbjct: 202 KTVETHRAHIKEKLGFKEAGEMVRFA 227 >UniRef50_Q11YW8 Two component transcriptional regulator, LuxR family n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11YW8_CYTH3 Length = 215 Score = 92.4 bits (228), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 59/195 (30%), Positives = 105/195 (53%), Gaps = 7/195 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 ++ II DDH L I++LL D E++ E T+G +Q ++TL P+IV++D+ +P + Sbjct: 5 ISIIIADDHTLIRDGIKSLLQSVDEFEVVGEATDGDELIQFIDTLDPEIVVLDITMPKKS 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+V+ ++K I++S ++ Y +GA ++ K II A++A G Sbjct: 65 GIEVITEVKKYNNRVKFIVLSMHDNPEYVLKSVQSGALSYLLKNTDHEEIIKAVKAVSAG 124 Query: 120 YCYFPFSLNRFV------GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 YF + + L Q ++L+K+E+ V++ + G IA+K+FIS + Sbjct: 125 QKYFSPDIYSIILNGLANPELVKASQIAETLTKRELEVLKEVSMGLSTKLIADKLFISVR 184 Query: 174 TVSTYKSRLMEKLEC 188 TV T++ LM+KL+ Sbjct: 185 TVETHRINLMKKLDV 199 >UniRef50_C1TL62 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TL62_9BACT Length = 217 Score = 92.4 bits (228), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 54/202 (26%), Positives = 104/202 (51%), Gaps = 5/202 (2%) Query: 4 IIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 ++IDDH L ++ LL ++ D + E ++G + ++ +PD+V++D+ +P ++GI Sbjct: 7 VLIDDHKLFRDGMKKLLEMEPDFSLEGEASDGIEGLALIKRSRPDVVLLDIGMPNLDGIG 66 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 ++ LR + + + ++A ND + G +GFV K G +++AI + G CY Sbjct: 67 LIRELRSTEQNTKFVAITAFNDERKLSELSSVGVHGFVLKSSGRTELLSAIRSVARGQCY 126 Query: 123 F-PFSLNRFVGSLTSDQQKLD---SLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTY 178 P +G+ Q + D L+ +E V+ ++ G N +I+ KM +S KTV + Sbjct: 127 VDPKVAGLLLGAFHKKQDEADMLCDLTDREKEVLFWLAQGLSNLEISAKMNLSEKTVKNH 186 Query: 179 KSRLMEKLECKSLMDLYTFAQR 200 S +++KL+ + A R Sbjct: 187 VSHILKKLDLRDRTQAAILAWR 208 >UniRef50_Q1GIA7 Two component transcriptional regulator, LuxR family n=29 Tax=Alphaproteobacteria RepID=Q1GIA7_SILST Length = 233 Score = 92.0 bits (227), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 57/200 (28%), Positives = 104/200 (52%), Gaps = 5/200 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I+DDHP+ I+++L DIE++ ++ G A+ R E L PD++++D+++P V Sbjct: 24 IRVLIVDDHPMVAEGIQSILESYGDIEVVGAVSSGREAIARAEALVPDVILMDLNMPDVG 83 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ E +++R ++I+S + Y GA G+V K I AI+A G Sbjct: 84 GLSATEIIQERCPEIRVLILSMHDSPEYITTALSHGAVGYVLKDVQPEEIKTAIDAVMRG 143 Query: 120 YCYFPFSLNRFVGSLTSDQQ-KLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTY 178 Y GSL+ Q ++L+ +E +++ + GK N ++A+ + IS +TV T+ Sbjct: 144 EQYL---CTGAAGSLSPQSQTSREALTGREQTILLELAQGKSNKEVAQALDISVRTVETH 200 Query: 179 KSRLMEKLECKSLMDLYTFA 198 + + KL S L +A Sbjct: 201 RKNIKRKLGISSTAGLTRYA 220 >UniRef50_C7RMN3 Two component transcriptional regulator, LuxR family n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RMN3_9PROT Length = 213 Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 109/201 (54%), Gaps = 3/201 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH + +R LL + +D+E+++E A+ + + D+ ++D+ +PG Sbjct: 6 LQILLVDDHAVVRGGLRLLLAQTDDMEVVSEAENAEQAISMIRQNEFDVALVDIGLPGKG 65 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAI-EAAKN 118 G+ +L+ ++ + ++++S + Y AGA+G+++K ++AAI + A Sbjct: 66 GLDLLKQIKAERPRIAVLMLSMYAEEVYAVRALKAGASGYLTKNSPPGTLLAAIRKVAGG 125 Query: 119 GYCYFPFSLNRFVGSLTSDQQKL-DSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 G P L + + ++ D+LS +EI V+R + G+ IAE + +S KTV+T Sbjct: 126 GRHVSPALLEQLAVEVGQGRKSASDALSDREIEVLRRLASGESLTQIAEALHLSPKTVTT 185 Query: 178 YKSRLMEKLECKSLMDLYTFA 198 Y++R++EK S +L +A Sbjct: 186 YRARIVEKTGLHSNAELTRYA 206 >UniRef50_C4L5Q6 Two component transcriptional regulator, LuxR family n=2 Tax=Bacillales RepID=C4L5Q6_EXISA Length = 230 Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/203 (28%), Positives = 107/203 (52%), Gaps = 19/203 (9%) Query: 5 IIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQV 63 I+DDH L ++ + ++++ ++AE G A++ KP+I+I+D+++P +NGI+ Sbjct: 10 IVDDHELFREGLKRIFDLEDEFTVVAEGRTGREAIRIAGEQKPEILIMDINMPDMNGIEA 69 Query: 64 LETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEA-AKNGYCY 122 + L ++I+S +D Y H +AGA+GF+ K+ +I+A+ A AK+G Sbjct: 70 TKQLSLLSPETRVLILSIHDDESYITHALEAGASGFLLKEVASTELISAVRAVAKDGAYL 129 Query: 123 FP----------FSLNRFVGSLT-------SDQQKLDSLSKQEISVMRYILDGKDNNDIA 165 P L +F G +D LS++E+ V+ + DG+ N DI+ Sbjct: 130 HPKVTTNVLKEYRRLLQFKGEQAGRGVESRTDDPVYQLLSRREVEVLHLLADGRSNRDIS 189 Query: 166 EKMFISNKTVSTYKSRLMEKLEC 188 + +FIS KTV + S ++ K++ Sbjct: 190 DMLFISEKTVKNHVSSVLRKMDV 212 >UniRef50_A6M052 Two component transcriptional regulator, LuxR family n=8 Tax=Firmicutes RepID=A6M052_CLOB8 Length = 219 Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/212 (27%), Positives = 114/212 (53%), Gaps = 15/212 (7%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 +N +++DD + I+ +L + N+I IL E G ++ ++ ++PDI+++D+ +P +N Sbjct: 2 INVVLVDDQQIVREGIKIILSLDNEISILKEAENGKQLLKILQEIQPDIILMDIRMPFMN 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + ++++ + +II++ N+ Y GA+G++ K ++II +I+AA NG Sbjct: 62 GVEATKIVKEKYNNIKVIILTTFNEDEYVLQGIRNGADGYILKDARSHDIIKSIKAAYNG 121 Query: 120 YCYF----PFSLNRFVGSLTSDQQ----------KLDSLSKQEISVMRYILDGKDNNDIA 165 L R S++ D+Q KL+ L+++E+ V + + G N DI Sbjct: 122 DILLDPAVTTKLIRAFNSISIDKQNSRIINKQKKKLELLTQREMDVAKLVAQGNSNKDIC 181 Query: 166 EKMFISNKTVSTYKSRLMEKLECKSLMDLYTF 197 +F++ TV Y + + EKLE S +L F Sbjct: 182 HTLFLTEGTVKNYLTNIFEKLELSSRTELALF 213 >UniRef50_B0SY65 Two component transcriptional regulator, LuxR family n=1 Tax=Caulobacter sp. K31 RepID=B0SY65_CAUSK Length = 222 Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 108/210 (51%), Gaps = 10/210 (4%) Query: 4 IIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 ++ DDH + A +R L + I E + G AV+ + L PD++I+D+ +P ++G+ Sbjct: 10 LLADDHSIVRAGLREALESQPGWTICGEASNGRDAVRMAKELVPDVMILDISMPDLSGVI 69 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 V +RK + ++I + + + AGA GFV K +NIIAA+ + N Y Sbjct: 70 VARDVRKLKTHTELLIFTMHDSEQLVREVLSAGARGFVLKSASTDNIIAAVASLLNHKPY 129 Query: 123 FPFSLNRFV--GSLTSDQQKL-------DSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 F + V G L+ L ++L+ +E+ +++ + + + N IA + IS K Sbjct: 130 FCPGITDTVLRGYLSPGGHALGELIEGAETLTTRELLIVQLLAESRSNKVIASMLDISVK 189 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TV +++ +M KL SL D+ +A RNK+ Sbjct: 190 TVESHRGNIMRKLGAHSLADIVRYAIRNKL 219 >UniRef50_C2C4B6 Transcriptional regulator n=1 Tax=Listeria grayi DSM 20601 RepID=C2C4B6_LISGR Length = 214 Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 59/211 (27%), Positives = 112/211 (53%), Gaps = 8/211 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIP-GV 58 M +I DDH + +A++ ++ + D+E++ + +G A +E+ +PDIV++D+ +P G Sbjct: 1 MKLLIADDHAVVRSALKFMINAQKDMEVIGDAADGTEAFLFIESNRPDIVLMDLSMPPGE 60 Query: 59 NGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKN 118 NG+ + + + +I+++ ++ Y AGA G++ K ++ AI + Sbjct: 61 NGLLTTKRITEAFPETKVILLTMHDEEAYITQALQAGAQGYIMKNSSEELLLDAIRSVMG 120 Query: 119 GYC----YFPFSLNRFVGSLTSDQQK--LDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 G F +S + +D + ++ LSK+E ++ I G N +IAE++FIS Sbjct: 121 GQIIIDPVFNYSSKQIEQLKRADASENIIERLSKREKEILPLIALGYGNKEIAERLFISA 180 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 KTV +KS +M+KLE K DL F + ++ Sbjct: 181 KTVEVHKSHIMKKLEMKKFSDLLRFCVKEQL 211 >UniRef50_Q98DH9 Two-component system response regulator n=1 Tax=Mesorhizobium loti RepID=Q98DH9_RHILO Length = 215 Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 106/204 (51%), Gaps = 4/204 (1%) Query: 4 IIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +I DDHP+ + IR +L + + + E G +AV+ IVI+D +P +NG++ Sbjct: 9 VIADDHPIVRSGIRAVLEQRAEWWVCGEADNGETAVRLAREHAAKIVILDYSLPVLNGLE 68 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 +R+ ++I + D + AGA G++ K E + ++AA+ A G Y Sbjct: 69 ATRIIRRTMPETEVLIYTMHEDESLIRETLRAGARGYLLKIEDDSELVAAVAALIRGQTY 128 Query: 123 FPFSLNRFV-GSLTSDQQKLDS--LSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 F ++ V Q + S L+ +E V+R++ +G+ N IA ++ +S KTV +++ Sbjct: 129 FSPRVSECVLQDFLDGQSDVTSRNLTNREREVVRFVSEGESNKRIAARLGVSVKTVDSHR 188 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 + M KL ++ +DL +A RNK+ Sbjct: 189 TTAMRKLGLRNAVDLVRYAIRNKL 212 >UniRef50_B9L1R6 Response regulator uvrY n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L1R6_THERP Length = 221 Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 9/208 (4%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDHP+ +R LL + DI ++ E AV+ TL+PD+ ++D+ +PG N Sbjct: 6 IRVLLADDHPIVRVGLRALLEAEPDIAVVGEAGTADEAVELARTLQPDVAVLDISMPG-N 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ L + +I++ + Y AG +G+V K +++ AI G Sbjct: 65 GLEALRRIASLGLPTRTLILTVHAEERYLLPVLQAGGSGYVRKSSLHTDLVEAIRLVARG 124 Query: 120 YCYFPFSLNRFV--GSL----TSD-QQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 + + R + G L T + Q LS++E V+R G +IA+++F+S Sbjct: 125 EVFIDQAAARTLLQGYLDHARTGEVQDPAQLLSEREREVLRLTAAGYTAQEIADQLFLSP 184 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQR 200 KTV TY+ R+M+KL +L FA R Sbjct: 185 KTVETYRHRVMQKLGFSRRSELVRFALR 212 >UniRef50_C7NKN7 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=138 Tax=Bacteria RepID=C7NKN7_KYTSD Length = 244 Score = 91.7 bits (226), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/213 (28%), Positives = 114/213 (53%), Gaps = 24/213 (11%) Query: 5 IIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQV 63 ++DD L A R +L + D+ ++ E +G SAV +++T+ D+V++D+ +P ++GI+ Sbjct: 7 LVDDQSLVRAGFRMVLDAQPDMSVVGEAPDGQSAVDQLKTIAADVVLMDIRMPRLDGIEA 66 Query: 64 LETLRKR-QYSG-----IIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAK 117 L R ++ G ++++ + D Y +AGA+GF+ K G ++AAI A Sbjct: 67 TRVLLGRDKHPGGAEPKVVVLTTFDMDE-YAYAALEAGASGFLLKDAGPEELLAAIRAVA 125 Query: 118 NGYCYFPFS-----LNRFVGSLT---------SDQQKL--DSLSKQEISVMRYILDGKDN 161 +G S L RFV +LT ++QQ+ + L+++E V + G N Sbjct: 126 SGDAVVAPSTTKRLLERFVPTLTPEVADVASPAEQQEYLREVLTEREYEVFEAVAAGLSN 185 Query: 162 NDIAEKMFISNKTVSTYKSRLMEKLECKSLMDL 194 +IA+++F++ T+ T+ RL+ KL C+ + L Sbjct: 186 TEIAKELFVAEATIKTHIGRLLFKLGCRDRVQL 218 >UniRef50_UPI0001788591 two component transcriptional regulator, LuxR family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788591 Length = 202 Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 55/204 (26%), Positives = 107/204 (52%), Gaps = 3/204 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 MN +I+DD PL ++R LL + D+E+ A +G +A+Q E + PDIV++D+ +PG++ Sbjct: 1 MNILIVDDDPLVCQSLRLLLSREADMEVTATANDGAAAIQCCEEVLPDIVLMDIRMPGMD 60 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GIQ ++++ I++++ D + AGA G++ K ++++ + A +G Sbjct: 61 GIQAARQIKQKWPQVQIMMLTTFQDEHSIRLALLAGAEGYMLKSTQVSSMAQQLRALASG 120 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 N + +++ L+ +E ++ + G N +IAE++FIS TV Sbjct: 121 SSV--VDANVLKTLMLPEKENRSDLTPRENDILELVALGCSNREIAEQLFISEGTVRNTL 178 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 S +++KLE + L + R + Sbjct: 179 SIILDKLELRDRTQLAIYYWRQSL 202 >UniRef50_C0DXM6 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DXM6_EIKCO Length = 215 Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 96/185 (51%), Gaps = 2/185 (1%) Query: 4 IIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +++DDHPL + LL + EI+AE T+G V+ +PD+V++DV++P +NG + Sbjct: 9 LLVDDHPLFRRGLSFLLAQEYGFEIVAEATDGLEGVKLARFHRPDLVLLDVEMPVMNGPE 68 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 L + Q +++++ D K C + GA G++ K + ++ AI A G Sbjct: 69 ALAQMLDFQPGLPVLMLTISEDADNLKKCLELGARGYILKNADTDFLVEAIRQAVAGQQT 128 Query: 123 FPFSLNRFVGSLTSDQQK-LDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKSR 181 +N S+ + LDSL+++E V+RY+ G N IA +MF+S TV + Sbjct: 129 VSPEMNNAGQSIPPEHSAILDSLTQRERDVLRYVAGGISNKMIARRMFLSENTVKAHMQN 188 Query: 182 LMEKL 186 + KL Sbjct: 189 IFRKL 193 >UniRef50_Q1J0X7 Two component transcriptional regulator, LuxR family n=5 Tax=Bacteria RepID=Q1J0X7_DEIGD Length = 228 Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 53/192 (27%), Positives = 99/192 (51%), Gaps = 5/192 (2%) Query: 4 IIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +++DDHP+ R LL + D+ ++ E G A+ + L PD++++DV +PG+NGI+ Sbjct: 18 LLVDDHPVVRKGTRELLEGEADLRVVGEAESGEEAILKARQLMPDVILMDVSMPGMNGIE 77 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 ++ + I+++++ +D Y +AGA G++ K + ++ A+ A G Sbjct: 78 ATRAIKAERPGVGILVLTSYDDDAYVFALLEAGAAGYLLKNASEDELLGAVRAVAAGESA 137 Query: 123 FPFSLNRFVGSLTSDQQKL----DSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTY 178 ++ R V S Q D+LS +E+ V+R G+ N +IA + IS +TV + Sbjct: 138 LHPAVARKVLERFSTHQTPTPPEDALSPRELEVLRVAATGRTNKEIARDLDISPRTVQVH 197 Query: 179 KSRLMEKLECKS 190 + + KL S Sbjct: 198 LANIFSKLGVGS 209 >UniRef50_UPI0001C314AF two component transcriptional regulator, LuxR family n=2 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C314AF Length = 228 Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 47/196 (23%), Positives = 103/196 (52%), Gaps = 1/196 (0%) Query: 4 IIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +I DDH + + +R +L + DI ++AE + SA + V P ++++D+++PG + Sbjct: 17 VIADDHRVVRSGLRMVLDAEPDIAVVAEAGDVPSAERAVRAHHPHVLVLDLNMPGEQSLP 76 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 + L +++++ + D + + +GA G+V K+ + ++ A+ A+ G Y Sbjct: 77 AIPRLVAELPETAVVVLTMQQDPAFAREALRSGARGYVLKEAADDELVQAVRLAREGRTY 136 Query: 123 FPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKSRL 182 L + + D L+ +E+ V+R I G N +IA+++F+S +TV ++++ + Sbjct: 137 LNPELGARMAAEPPPSGPPDDLTARELEVLRLIALGHTNAEIAQQLFLSIRTVESHRAHI 196 Query: 183 MEKLECKSLMDLYTFA 198 +K+ S +L +A Sbjct: 197 QQKVRRSSRAELVRYA 212 >UniRef50_C0ZDE8 Two-component response regulator n=7 Tax=Bacillales RepID=C0ZDE8_BREBN Length = 214 Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 59/207 (28%), Positives = 114/207 (55%), Gaps = 5/207 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIP-GV 58 + +++DDH + +R LL + I+I+ E G A+ + LKPD+V++D+ +P G+ Sbjct: 2 IRVLLVDDHTMIRKGLRVLLESYSQIKIVGESHTGNDAILKANQLKPDVVLMDLSLPNGL 61 Query: 59 NGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKN 118 +G + +RK I+I++ ++ + + GA+G++ K + AI Sbjct: 62 DGFTASKEIRKSNPLVKIVILTMHDEEIFVQEAITVGAHGYILKNSHGELLFQAIVEVYR 121 Query: 119 GYCYFPFSLNRFVGSLT--SDQQKLDS-LSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 G C++ S+++ + +L SD + L S L+ +E ++R I+ G N ++A+K+ IS KTV Sbjct: 122 GKCFYKTSVSQEIINLWLRSDAKTLPSVLTLREKELVRLIVLGYSNKEMADKLLISVKTV 181 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNK 202 +K+ +M+KL S L +A +N+ Sbjct: 182 ENHKTNIMQKLGLDSKHQLIQYAIKNR 208 >UniRef50_B9XC41 Two component transcriptional regulator, LuxR family n=7 Tax=Verrucomicrobia RepID=B9XC41_9BACT Length = 267 Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 106/203 (52%), Gaps = 8/203 (3%) Query: 4 IIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 ++ DDH + +R LL + DI+I+ E G AVQ + L PD++++D+ +P +NG++ Sbjct: 34 LLADDHTVVRQGLRALLSGEKDIQIVGEAGTGREAVQMAQKLTPDVILMDIAMPLMNGLE 93 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 + + S ++++S+ + Y + +AGA+G++ K N+++AA+ G + Sbjct: 94 ATRKIAEVAPSAKVLVLSSYGEDDYVQKLTEAGASGYLIKHAAANDLVAAVRETHKGNAF 153 Query: 123 F-PFSLNRF-----VGSLTSDQQKLD-SLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 F P R G + K L+++E+ + +I+ GK N IA M IS KTV Sbjct: 154 FSPGIAKRLRDQVRAGFANGNGTKASFELTERELETLGHIVAGKPNKVIACDMGISIKTV 213 Query: 176 STYKSRLMEKLECKSLMDLYTFA 198 ++ ++M KL + L +A Sbjct: 214 EKHRQQVMNKLNIHEVASLTRYA 236 >UniRef50_C6DD36 Two component transcriptional regulator, LuxR family n=1 Tax=Pectobacterium carotovorum subsp. carotovorum PC1 RepID=C6DD36_PECCP Length = 218 Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 49/204 (24%), Positives = 110/204 (53%), Gaps = 1/204 (0%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 +N ++DDH + + LL ++NDI+++ + A + D+ +ID+ +P + Sbjct: 11 INVALVDDHIVVRSGFAQLLALENDIQVVGQYASAAQAWPHLLKQPIDVAVIDIAMPDES 70 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ +L LR+++ II+S + + + DAGA G+++K+ G ++ A+ +G Sbjct: 71 GLSLLTRLRQQRPQFRAIILSIYDTTAFVQSALDAGAGGYLTKRCGPEELVQAVRVVSSG 130 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 Y + ++L +L+ +E + +++G IAE++ +S+KTV ++ Sbjct: 131 GIYLCADALHAIRHQQQPPKELLALTPREREIFSLLINGISVKSIAEQLELSHKTVHVHR 190 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 + ++ KL+C+S ++L FA ++++ Sbjct: 191 ANILSKLQCESTVELVHFALQHQL 214 >UniRef50_A1ZEE6 Two-component response regulator n=2 Tax=Microscilla marina ATCC 23134 RepID=A1ZEE6_9SPHI Length = 213 Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/210 (28%), Positives = 115/210 (54%), Gaps = 14/210 (6%) Query: 5 IIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETL----KPDIVIIDVDIPGVN 59 I++DH + ++ LL K ++++LAE G Q ++ L +PDIV+ D+++PG++ Sbjct: 6 IVEDHTIVRQGLKQLLAKYAEMKVLAEF---GVPDQIMDNLAKGERPDIVLCDINLPGMD 62 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ + E ++++ III++ FY DAGA+G+ K + +I I+ NG Sbjct: 63 GLALTEKIKQKYPDQKIIILTMHQKEFYVLKAFDAGADGYFHKDTEESELIMGIKKIYNG 122 Query: 120 YCYFPFS-----LNRFVGSL-TSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 YF S +NR + + +S + L +L+ +E V+ ++ G N +I +K+ IS + Sbjct: 123 QKYFCQSVSQILINRLLDTKNSSGKTLLPTLTFREKEVLEQVVAGLGNREIGDKLCISTR 182 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TV +++ ++ K K+ ++L FA N + Sbjct: 183 TVENHRANILRKFGLKNTVELVKFAIENSL 212 >UniRef50_Q2RMH6 Two component transcriptional regulator, LuxR family n=8 Tax=Bacteria RepID=Q2RMH6_MOOTA Length = 221 Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/215 (26%), Positives = 109/215 (50%), Gaps = 14/215 (6%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDI-PGV 58 + +++DDH L +R LL + DIE++ E + E +P++V++D+ + G Sbjct: 3 IRVMLVDDHALVREGLRALLEREGDIEVVGETGSAAGVLALAEESRPEVVVMDLQLGAGR 62 Query: 59 NGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKN 118 NG++ L +++ ++I+S +D ++GA G+V K+ G+ + AI Sbjct: 63 NGVEATRELVEKKPEIKVVILSMYDDEELVFRALESGARGYVLKRAGIEELTTAIRLVAR 122 Query: 119 GYCYFPFSLNRFVGSLTSDQQKLD----------SLSKQEISVMRYILDGKDNNDIAEKM 168 G Y + R V + Q++L L+++E+ V+R +G N +IA ++ Sbjct: 123 GEAYLDPQIARRV--IEGLQERLPFTRASRPEGPELTERELEVLRLAAEGLTNAEIARRL 180 Query: 169 FISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 IS KTV +++ +M+KL +DL +A +N I Sbjct: 181 VISVKTVQAHRANIMQKLGLHDRVDLVKYAIKNGI 215 >UniRef50_Q5NZX4 Two-component response regulator n=3 Tax=Betaproteobacteria RepID=Q5NZX4_AZOSE Length = 211 Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 55/204 (26%), Positives = 113/204 (55%), Gaps = 9/204 (4%) Query: 1 MNAIIIDDHPLAIAAIR-NLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH L ++ + D+E++AE T GG + ++T ++++D+ +PG++ Sbjct: 2 IRVLVADDHFLVREGLKMTIAAMQDVEVVAEATNGGEVLAAIKTCNAHVLLLDMSMPGLS 61 Query: 60 GIQVLETLRKRQYSGI-IIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKN 118 G+ ++ + K ++ G+ I+++S + +GA+G+V+K +G +++AI + Sbjct: 62 GVDLVRRV-KSEWPGLPILVLSMYGETQLAAKVLQSGASGYVTKGKGREILLSAIRKVAS 120 Query: 119 GYCYFPFSLNRF----VGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 G+ Y L V T+ Q + L+ +E ++R + GK IA ++ +S KT Sbjct: 121 GHRYIDPDLAEKILFDVRMPTASVQ--EQLTHRESQILRMLQAGKSVTQIANELSVSPKT 178 Query: 175 VSTYKSRLMEKLECKSLMDLYTFA 198 VST+K R M+KL C++ ++L +A Sbjct: 179 VSTHKIRAMQKLHCQNNVELLKYA 202 >UniRef50_D2QGZ7 Two component transcriptional regulator, LuxR family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QGZ7_9SPHI Length = 218 Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 54/218 (24%), Positives = 117/218 (53%), Gaps = 19/218 (8%) Query: 4 IIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPD------IVIIDVDIP 56 +++DDH + IR LL + D +EI+ E +G + +++ L+PD ++++D+ +P Sbjct: 1 MLVDDHSIVRDGIRLLLEQADGLEIIDEANDGEEVLDKLKVLQPDPSLLPDLILMDISLP 60 Query: 57 GVNGIQVLETLRKRQYSGI-IIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEA 115 G++GIQ + + R Y + ++++S N+ Y +AGA G++ K + +I AI Sbjct: 61 GMSGIQTTQVI-SRLYKNVRVLMLSMHNNEDYILRSVEAGAYGYILKDSSSDEMIKAIRT 119 Query: 116 AKNGYCYFPFSLNRFV----------GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIA 165 +G Y+ + + G ++ LS +E ++++++DG + +IA Sbjct: 120 IASGEKYYSSPVASIILSGYMQQLKKGDRHGRAERQSKLSNKEKEILQFLVDGMSSREIA 179 Query: 166 EKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 EK+ +S +TV +++ +M +L+ ++ +L A +K+ Sbjct: 180 EKLQLSVRTVDNHRANMMRRLQVRNAAELVRMAVEDKL 217 >UniRef50_Q48GV3 DNA-binding response regulator, LuxR family n=14 Tax=Pseudomonas RepID=Q48GV3_PSE14 Length = 220 Score = 90.9 bits (224), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 58/212 (27%), Positives = 109/212 (51%), Gaps = 10/212 (4%) Query: 2 NAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 N +++DDH L A +R L+ + I+ E +G + LKPDI+++D+ + V+G Sbjct: 4 NLLLVDDHSLIRAGVRALVAEMPGYAIIGETADGAQLSSLAQRLKPDIILLDIWMKSVDG 63 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 ++ LE L K Q ++I+S D D GA G++ K + A+EA +N Sbjct: 64 LEALEHLLKVQPHCKVLILSMHTDPDMIMRALDIGARGYLLKDTTATELEQALEALRNNE 123 Query: 121 CYFPFS-----LNRFVGSLTSDQQKLDS----LSKQEISVMRYILDGKDNNDIAEKMFIS 171 Y + + R + SD+ + L+ +++ ++R I+ GK +IA+ + +S Sbjct: 124 RYLSPAIAHTVIERALRGTRSDRARAAKERYHLTARQLEILRLIVRGKSTREIADGLGLS 183 Query: 172 NKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 KT+ T++S++M++L+ + L F R +I Sbjct: 184 IKTIETHRSQVMKRLQIFDVAGLVLFCVRERI 215 >UniRef50_A7LKW1 Putative two component transcriptional regulator n=1 Tax=uncultured Methylophaga sp. RepID=A7LKW1_9GAMM Length = 217 Score = 90.9 bits (224), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 53/199 (26%), Positives = 96/199 (48%), Gaps = 2/199 (1%) Query: 4 IIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQV 63 ++IDDH + + LL E++ + Q L+P + IID+ +PG G++ Sbjct: 9 LLIDDHAILREGYQQLLESAGFEVIGQSGNAEEGYQAFIALQPKVCIIDLTMPGTGGLEC 68 Query: 64 LETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYF 123 + + R I++ S + + GA G+++K + +I A+++ Y Sbjct: 69 VRRICNRDKDARILVCSMHEETTLAMRALELGAIGYITKSCSSDVLIEAVKSVAEKRHYL 128 Query: 124 PFSLNRFVG--SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKSR 181 + R + L QK+DSLS QE +V R + +G +I++ + ++ KTVS YK+ Sbjct: 129 GAEVARSIAMEKLIKTDQKIDSLSHQEFAVFRMVAEGMSIEEISKSLTLAPKTVSNYKTN 188 Query: 182 LMEKLECKSLMDLYTFAQR 200 +M KL L D+ AQ+ Sbjct: 189 MMRKLGTTKLADIIFLAQK 207 >UniRef50_D2R8T9 Two component transcriptional regulator, LuxR family n=4 Tax=Planctomycetales RepID=D2R8T9_9PLAN Length = 210 Score = 90.9 bits (224), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 52/199 (26%), Positives = 103/199 (51%), Gaps = 4/199 (2%) Query: 4 IIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQV 63 ++ DDH + A + +L+ +D++++AE T G A+++ L+PD+V++DV +P +G++ Sbjct: 6 LVADDHEVVRAGVAAMLLGSDVKVIAEATSGNQAIEQAMKLRPDVVLLDVRLPETDGLEA 65 Query: 64 LETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYF 123 LE + R +++ +A ++ Y GA GF+ K ++++AI A G Sbjct: 66 LERILDRSPQTKVVMFTAYDNPTYIARAVALGAAGFLMKGSTKADVLSAITRAHTGLPPE 125 Query: 124 PFSL-NRFVGSLTSDQQKLD---SLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 SL R ++ + D L+ +E+ V+R++ G N +I + IS +TV + Sbjct: 126 NESLMGRVRNTMARRRPTYDEEIPLTNREVQVLRHVALGLSNREIGRSLDISIETVKEHV 185 Query: 180 SRLMEKLECKSLMDLYTFA 198 ++ KLE + +A Sbjct: 186 QNILRKLEAGDRTEAAVWA 204 >UniRef50_B0TSG4 Two component transcriptional regulator, LuxR family n=4 Tax=Proteobacteria RepID=B0TSG4_SHEHH Length = 222 Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 59/207 (28%), Positives = 113/207 (54%), Gaps = 8/207 (3%) Query: 4 IIIDDHPLAIAAIRNLL--IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGI 61 I++DDH L A IR+LL I N +E++ E +G A+ + T +P ++I+D+ +PG+NG+ Sbjct: 8 ILVDDHILVRAGIRSLLESIAN-VEVIKESGDGIEALSLLRTHQPTLLILDISLPGLNGL 66 Query: 62 QVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 121 +V ++ K + I+++S +D Y G++G++ K+ + + AI N Sbjct: 67 EVARSVTKMKTKTKILMLSMHSDVEYVAKALTIGSHGYLMKESAVEELETAISTLINDKQ 126 Query: 122 YFPFSLN-RFVGSLTSDQQK----LDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 Y +++ V L D + + L+ ++ +++ I +G +IAE+M +S KTV Sbjct: 127 YIGKNIDLEMVDKLRGDSNQESDLIKLLTSRQRQILQLIAEGYSTREIAERMSVSIKTVE 186 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKI 203 T+++ +M +L + L FA R K+ Sbjct: 187 THRAHIMSRLNIFDIAGLVRFAIRCKL 213 >UniRef50_C5B7B5 Nitrate/nitrite response regulator protein NarP n=13 Tax=Gammaproteobacteria RepID=C5B7B5_EDWI9 Length = 215 Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 100/188 (53%), Gaps = 1/188 (0%) Query: 4 IIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +I+DDHPL +R LL + + ++AE + G A+ +PD++++D+++ G++G+ Sbjct: 14 MIVDDHPLMRRGVRQLLELDSVFSVVAEASNGSEAIALAGRSQPDLILLDLNMKGLSGLD 73 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 L+ LR III++ + DAGA+ ++ K ++A I A G Sbjct: 74 TLKALRSEGIDARIIILTVSDARSDVYALVDAGADSYLLKDSEPEALLAQIRQAAEGRSV 133 Query: 123 FPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKSRL 182 F S++ ++ + + L L+++E+ V++ ++ G N IA ++ IS +TV + L Sbjct: 134 FSESVSAYLSTRSEIADPLADLTERELDVLQEVVRGMSNKQIAAQLHISEETVKVHIRNL 193 Query: 183 MEKLECKS 190 + KL +S Sbjct: 194 LRKLNVRS 201 >UniRef50_C6C0G1 Two component transcriptional regulator, LuxR family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6C0G1_DESAD Length = 218 Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 60/210 (28%), Positives = 108/210 (51%), Gaps = 10/210 (4%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I DDH L ++ +L ++ I +L G AV+ L PD+ ++D+ +P + Sbjct: 5 VTVVIADDHALVREGLKTILKSQSGISVLGMAENGEEAVRLCRRLNPDVALMDLSMPIKS 64 Query: 60 GIQVLETLRKRQYSGIIIIVS-AKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKN 118 G+Q ++ L + + + + + DH Y DAGA+G+V K ++ AIE Sbjct: 65 GVQAIQELSGEGKTKFLALTAHVEPDHIYS--ALDAGASGYVLKTSSSKELVMAIETVMQ 122 Query: 119 GYCYFPFSLNRFV--GSLTSDQQ----KLDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 G Y ++ V G L D+ L+SL+++E V++ +L G N +IA+ + IS Sbjct: 123 GKVYLAPDISAEVAKGFLQRDRSNSCDSLESLTEREREVLKQVLAGYKNREIADLLVISV 182 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNK 202 KTV ++S M+KL +S +L +++ K Sbjct: 183 KTVEKHRSNFMKKLGLRSKAELKAYSEELK 212 >UniRef50_B1ZP37 Two component transcriptional regulator, LuxR family n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZP37_OPITP Length = 246 Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 55/212 (25%), Positives = 103/212 (48%), Gaps = 12/212 (5%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++IDDHP +R + + D+ ++ E A + L+PD++++D+++P N Sbjct: 5 LTVLVIDDHPATREGLRAAIDAQRDLRVVGEAATWQEARRLAAELRPDVMVLDLNLPDGN 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G ++E L+ +++S ++ Y + AGA G++ K E M I+ AI + G Sbjct: 65 GWTLVEQLKAADALPPTLVLSVCDEQLYARRLLRAGAGGYLMKDEPMETILRAIREVREG 124 Query: 120 YCYFPFSLNRFVGS----LTSDQQK-------LDSLSKQEISVMRYILDGKDNNDIAEKM 168 ++ + S + D+ L LS +E+ + + G N +IA ++ Sbjct: 125 RIIASATITNSLLSEALGMREDEPPAEAHDGNLAELSDRELQIFALLGRGLRNKEIAARL 184 Query: 169 FISNKTVSTYKSRLMEKLECKSLMDLYTFAQR 200 +S KTV+TYK RLM KL ++ L +R Sbjct: 185 RLSEKTVATYKVRLMSKLGVRTTPALIEHYRR 216 >UniRef50_Q0B0G6 Response regulator receiver protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0B0G6_SYNWW Length = 213 Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 61/207 (29%), Positives = 106/207 (51%), Gaps = 11/207 (5%) Query: 4 IIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +I DDH L +R LL + ++I+++ E+ +G A+ KPDI+I+DV++PG +GI Sbjct: 7 VIADDHVLVREGLRKLLELDSNIKVIDEVGDGQGAINIARKEKPDIIIMDVNMPGTDGIV 66 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCAD---AGANGFVSKKEGMNNIIAAIEAAKNG 119 +++ S II ++ + G+ D AGA+ ++ K + ++ I NG Sbjct: 67 ATRVIKRELPSVRIIALTV----YEGEEVVDMVKAGASAYILKDVAGSELVDTIHRVMNG 122 Query: 120 -YCYFPFSLNRFVGSLTSDQQKLDS--LSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 +P NR V L + + L+K+E V+ ++ G N ++AE MFIS KTV Sbjct: 123 EVVIYPRVANRLVRELRQSENRKSEIRLTKREKDVLTLLVKGNTNKEMAEVMFISEKTVK 182 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKI 203 + + + KL K +A +N+I Sbjct: 183 NHLTSIFRKLGVKDRTHAAIYALKNRI 209 >UniRef50_B4D0S7 Two component transcriptional regulator, LuxR family n=3 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0S7_9BACT Length = 232 Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 51/201 (25%), Positives = 104/201 (51%), Gaps = 6/201 (2%) Query: 4 IIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 ++++DH + + +L ++ E+ E A + + KPDIVI+D+ + G +G++ Sbjct: 23 VLVEDHRMFREWLTQMLGRDSGCEVCGETDNIHDAQRIIHETKPDIVIVDITLKGSSGLE 82 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 +++ +R + ++++S ++ Y + AGA G++SK E + + AI +G Y Sbjct: 83 LIKDMRAQGLETPVLVLSMHDEALYAERVLRAGARGYISKHEASSTLSKAIRHVLSGQVY 142 Query: 123 FPFS-----LNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 L + G S L+ L+ +E+ V + I G + +IA+ + + TV T Sbjct: 143 LSEGMTASLLEKVSGRKPSTSSGLELLADRELEVFQLIGKGHNGREIAQLLHLGETTVDT 202 Query: 178 YKSRLMEKLECKSLMDLYTFA 198 Y++R+ EKL ++ +LY+ A Sbjct: 203 YRARIKEKLRLRNAAELYSRA 223 >UniRef50_Q51373 Response regulator gacA n=50 Tax=Gammaproteobacteria RepID=GACA_PSEAE Length = 214 Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 54/206 (26%), Positives = 105/206 (50%), Gaps = 5/206 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH L I +L ++++ + G ++ LKPD+V++DV +PG+ Sbjct: 2 IKVLVVDDHDLVRTGITRMLADIEGLQVVGQADCGEDCLKLARELKPDVVLMDVKMPGIG 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ L + Q +++V+ + + AGA G+++K G+ ++ AI G Sbjct: 62 GLEATRKLLRSQPDIKVVVVTVCEEDPFPTRLMQAGAAGYMTKGAGLEEMVQAIRQVFAG 121 Query: 120 YCYFPFSLNRFVGSLTSDQQK----LDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 Y + + + + Q+ DSLS++EI + I + I++K+ +S KTV Sbjct: 122 QRYISPQIAQQLALKSFQPQQHDSPFDSLSEREIQIALMIANCHKVQSISDKLCLSPKTV 181 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRN 201 +TY+ R+ EKL S ++L A R+ Sbjct: 182 NTYRYRIFEKLSITSDVELALLAVRH 207 >UniRef50_B9L0H3 Transcriptional regulatory protein degU n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L0H3_THERP Length = 245 Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 62/216 (28%), Positives = 110/216 (50%), Gaps = 15/216 (6%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 +N +I+DDHPL + IR L +N I+ E +G A++ + L PD++++D+ +PG+N Sbjct: 4 INILIVDDHPLFRSGIRWSLEQNPQFVIVGEAADGSEALRLADELSPDVILVDLSLPGMN 63 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAI-EAAKN 118 G++V L++RQ +II++ D + AGA+ + +K +I I A+ Sbjct: 64 GLEVARALKRRQPQAGVIILTMHQDDEQLFNAIRAGASAYCTKDIEPEQLIDVITRVARG 123 Query: 119 GYCYFPFSLNR-FVGSLTSDQ----QKLD--------SLSKQEISVMRYILDGKDNNDIA 165 Y L+R FV S DQ +LD L+ +EI ++ + G N +IA Sbjct: 124 EYLINEMVLSRPFVASRVLDQFRELSRLDRTSSGFFSPLTPREIEILDCVARGYSNKEIA 183 Query: 166 EKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRN 201 + + IS++TV + + ++ KL +A R+ Sbjct: 184 QALNISDQTVKNHITSILRKLAVNDRTQAVIYALRH 219 >UniRef50_C6C961 Two component transcriptional regulator, LuxR family n=24 Tax=Gammaproteobacteria RepID=C6C961_DICDC Length = 211 Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 50/204 (24%), Positives = 111/204 (54%), Gaps = 1/204 (0%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 +N +IDDH + + LL ++ DI+++ + A + L D+ ++D+ +P + Sbjct: 4 INVALIDDHIVVRSGFAQLLSLEGDIQVVGQYASAADAGVSLLKLNVDVAVMDIAMPDES 63 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ +L LR+++ + II+S + + + DAGA G+++K+ G ++ A+ A G Sbjct: 64 GLSLLARLRQKRPTFRAIILSIYDTAAFVQSALDAGACGYLTKRCGPEELVQAVRAVHAG 123 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 Y R + + L++L+ +E + +++G IAE++ +S+KTV ++ Sbjct: 124 GSYLCADAMRALRHSRQRPKALEALTPREREIFDLLVNGLSVKTIAEQLDLSHKTVHVHR 183 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 + +++KL C + ++L FA ++++ Sbjct: 184 ANVLDKLHCATTVELVHFALQHQL 207 >UniRef50_A4XCA4 Response regulator receiver n=3 Tax=Actinomycetales RepID=A4XCA4_SALTO Length = 235 Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 56/209 (26%), Positives = 115/209 (55%), Gaps = 13/209 (6%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DD PL +A+R ++ + +D+ I E G AV+ LKPD+V++D+ +PG+ Sbjct: 3 IEVLVVDDQPLVRSALRMVVAEVDDMVIAGEAETGEEAVRLTRELKPDVVLMDLRMPGMG 62 Query: 60 GIQVL-ETLRKRQYSGIIIIVS-AKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAK 117 GI+ + +R + ++++ + ++DH +G AGA GF+ K +++I+ A+ Sbjct: 63 GIEATGQIVRLSPETRVLVLTTFDEDDHVFG--ALQAGAAGFLIKNMSLDDILDAVRTVA 120 Query: 118 NGYCYFPFSLNRFV--------GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMF 169 +G S+ R + + T ++ L ++++E V+ + G N++IA+++ Sbjct: 121 HGNGLLAPSVTRRLIKHVVDTRTAPTVPRRPLSGITEREREVLTLVGRGLSNSEIADELR 180 Query: 170 ISNKTVSTYKSRLMEKLECKSLMDLYTFA 198 +S+ TV TY +RL+ KL + + L A Sbjct: 181 LSHATVKTYITRLLSKLGARDRVHLVIAA 209 >UniRef50_Q46VQ7 Regulatory protein, LuxR:Response regulator receiver n=32 Tax=Betaproteobacteria RepID=Q46VQ7_RALEJ Length = 231 Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 58/201 (28%), Positives = 106/201 (52%), Gaps = 7/201 (3%) Query: 4 IIIDDHPLAIAAIR-NLLIKNDIEILAELTEGGSAVQRVETL----KPDIVIIDVDIPGV 58 ++IDDH L +R +L ++ D+ ++ E G +A+ +E +PD+VI D+ + G+ Sbjct: 22 LLIDDHALVRDGMRMHLTLQPDLYVVGEADGGEAALAWLERAGARERPDLVITDIGMRGM 81 Query: 59 NGIQVLETLRKRQYSGIIIIVSAKNDHF-YGKHCADAGANGFVSKKEGMNNIIAAIEAAK 117 GI + L + QY I ++V + +D+ Y + AGA G+V K + ++AAIEA Sbjct: 82 GGIALTAALHE-QYPEIAVLVVSMHDNLEYARQAVRAGARGYVLKDAPADELMAAIEAVL 140 Query: 118 NGYCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 G ++ + R + LD+L+++E ++ I G N +IA ++ +S +TV T Sbjct: 141 AGRVFYSARIARGMAEQMPATGPLDALTRRERDILGCIGRGMANKEIATQLGVSVRTVET 200 Query: 178 YKSRLMEKLECKSLMDLYTFA 198 ++ L KL + L +A Sbjct: 201 HRLNLKRKLGIEGRAGLVKYA 221 >UniRef50_P54662 Transcriptional regulatory protein degU n=24 Tax=Bacillales RepID=DEGU_BREBE Length = 236 Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 54/203 (26%), Positives = 108/203 (53%), Gaps = 20/203 (9%) Query: 4 IIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +IIDDH L ++ +L ++ + E++A+ +G +AV+ VE PD++++D+++P VNG++ Sbjct: 13 VIIDDHQLFREGVKRILAMEPEFEVVADGEDGENAVELVEKYNPDVILMDINMPKVNGVE 72 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 L +R ++++S +D Y H GA+G++ K+ + +I A++ G Y Sbjct: 73 ATRDLIQRYPDVKVLVLSIHDDESYVTHVLKTGASGYLLKEMDADALIEAVKVVAQGGAY 132 Query: 123 F-PFSLNRFVGS----LTSDQQK--------------LDSLSKQEISVMRYILDGKDNND 163 P + + + D+Q+ L L+++E V++ + DG N Sbjct: 133 IHPKVTHNLIKEYRRLVNEDEQESSEIGFKEVEYRKPLHILTRRECEVLQLMTDGYSNRM 192 Query: 164 IAEKMFISNKTVSTYKSRLMEKL 186 I E ++IS KTV + S +++K+ Sbjct: 193 IGEALYISEKTVKNHVSNILQKM 215 >UniRef50_C1A5E6 NarL family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A5E6_GEMAT Length = 213 Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 53/197 (26%), Positives = 110/197 (55%), Gaps = 5/197 (2%) Query: 4 IIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +++DDH L + LL + +++ E G +AV +E +PD+VI+D+++PG++G++ Sbjct: 8 VLVDDHSLVRRGLAVLLRLDGRHDVVGEAGTGEAAVPLIEAERPDLVILDLNMPGIDGLE 67 Query: 63 VLETLRKRQYSGIIIIVSAKND-HFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 121 L +R + + ++++S ++ H G+ AGA+G++ K + + AIE+ G Sbjct: 68 TLRRVRAKGLTTRVLVLSMHDETHLVGQ-ALSAGADGYLLKDSMDDELFFAIESVLRGQR 126 Query: 122 YFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKSR 181 Y +++R L + + SL+ +E V++ I +G + +AE + IS T + +++ Sbjct: 127 YLAAAIDR--ARLQESRMRPVSLTAREREVLQLIANGLTTSAVAEALNISPHTATRHRAN 184 Query: 182 LMEKLECKSLMDLYTFA 198 LM+KL + ++L A Sbjct: 185 LMQKLNVHNQVELVRIA 201 >UniRef50_C8QGG5 Two component transcriptional regulator, LuxR family n=1 Tax=Pantoea sp. At-9b RepID=C8QGG5_9ENTR Length = 194 Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 60/202 (29%), Positives = 102/202 (50%), Gaps = 15/202 (7%) Query: 4 IIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKP---DIVIIDVDIPGVNG 60 ++IDDHPL A+ + + I + +L G Q + L+ D+VI+D+ +P +G Sbjct: 5 LLIDDHPLVEVALSAACVNSPIPL--QLFAAGDEAQARQLLQQHAMDLVILDIGLPDSDG 62 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 +++L LR ++I SA+ A GA G+V K + M +++AI A G Sbjct: 63 LELLRRLRVHHPDCPVLIYSAEQSRHTLLRAASLGAAGYVVKSQSMAQLLSAILAVLGGQ 122 Query: 121 CYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKS 180 FP R LT +Q++ +L + G N IAE++ ISNKTVST+K Sbjct: 123 QAFPDLPERIDLPLTEKEQQIVAL----------LARGLSNLQIAEQLHISNKTVSTHKK 172 Query: 181 RLMEKLECKSLMDLYTFAQRNK 202 ++EK +S+++L + ++ Sbjct: 173 NILEKTGVQSVVELAALWKAHQ 194 >UniRef50_B8CMA1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=3 Tax=Gammaproteobacteria RepID=B8CMA1_SHEPW Length = 196 Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 56/195 (28%), Positives = 103/195 (52%), Gaps = 9/195 (4%) Query: 4 IIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQV 63 II DDH + I LL K + ++LA +G V+ V+ P++VI D+ +PG+ GI Sbjct: 5 IIADDHLIVAQGIAGLL-KAEHQVLAIAKDGEELVELVKQHDPELVITDISMPGMTGIAA 63 Query: 64 LETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYF 123 + L++ + +I ++ ++ Y + AGA G+V K E ++++ A+ + G Y Sbjct: 64 VAALKRIKKDLRVICLTMHDEQEYAEGAIAAGALGYVLKHEATDDLVDAVNSVLAGKQYL 123 Query: 124 PFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKSRLM 183 S+ + +LS +++SV+R + GK +A+ +FIS +TV +K +M Sbjct: 124 SKSVQV--------EDSAPTLSARQLSVLRLLAQGKSAKQVADALFISPRTVEFHKYSIM 175 Query: 184 EKLECKSLMDLYTFA 198 + +E KS +L +A Sbjct: 176 KLIEAKSSAELIQYA 190 >UniRef50_C1TQ52 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TQ52_9BACT Length = 214 Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 54/203 (26%), Positives = 105/203 (51%), Gaps = 6/203 (2%) Query: 4 IIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 ++ DDH + ++ LL + D+E++AE G A+ ++PD+ ++DV +P ++GI+ Sbjct: 6 LLADDHKILREGVKALLNRQEDMEVVAEAGNGEEALSIAGEIRPDVTVMDVMMPQMDGIE 65 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 + + S ++ +S D + GA GF+ K ++ A+ +G Y Sbjct: 66 ATRRIVE-DGSSRVVALSMYADRSFVSEMLKVGALGFLLKDCASTELVEAVRKVMDGEIY 124 Query: 123 FPFSLNRFVGSL----TSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTY 178 S++ V L D ++ L+ +E ++ + +G N ++AE++ +S KTV T+ Sbjct: 125 LGPSISHIVAKLYVSSLHDPDDIEPLTPREKEILMLLAEGNTNREVAERLHLSIKTVGTH 184 Query: 179 KSRLMEKLECKSLMDLYTFAQRN 201 + +M KL+ K+L DL +A RN Sbjct: 185 RQHIMNKLKLKNLADLVKYAIRN 207 >UniRef50_Q1AVR6 Two component transcriptional regulator, LuxR family n=17 Tax=Bacteria RepID=Q1AVR6_RUBXD Length = 220 Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 54/195 (27%), Positives = 98/195 (50%), Gaps = 9/195 (4%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I++D L +R LL ++ +E++ E +G A++R+ +P++V++DV +P ++ Sbjct: 5 VRVMIVEDQALMREGLRTLLDLEEGVEVVGEAADGVEALERLPGARPEVVLVDVRMPRMD 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GIQ++E L + II++ +D Y AGA G++ K + AAIE G Sbjct: 65 GIQLIERLGREHPEVAAIILTTFDDDEYVFRGLRAGARGYILKDTPSEELAAAIEKVHRG 124 Query: 120 YCYF--PFS------LNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFIS 171 P + L R Q LS++E+ V+R + G N +IA ++I+ Sbjct: 125 EAVLDGPITLKVISELGRLSKGPAGPQPGSGGLSEREMEVLRLVASGASNREIARALYIT 184 Query: 172 NKTVSTYKSRLMEKL 186 TV + S ++ KL Sbjct: 185 EGTVKNHISSILRKL 199 >UniRef50_A8MF72 Two component transcriptional regulator, LuxR family n=14 Tax=Clostridia RepID=A8MF72_ALKOO Length = 224 Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 58/211 (27%), Positives = 105/211 (49%), Gaps = 8/211 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 +N +I DDH L ++ ++ ++ DI+++ +G AV + + L PD+V++D+ +P N Sbjct: 11 INVLIADDHALVRQGLKQIIELEPDIKVIGLAADGEEAVLKTQQLSPDVVLLDISMPKQN 70 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GIQ L L+ + II+++ D Y + GANG+V K ++I AI G Sbjct: 71 GIQTLRRLKDMDSTIKIIMLTFHEDREYLFETINLGANGYVLKDAESESLIKAIRDVYQG 130 Query: 120 YCY-FPFSLNRFVGSLTSDQQKL------DSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 Y +P V + K D L+++E V+ + +G +N +I + +FIS Sbjct: 131 LNYIYPTLATELVKEFNRREVKSQKRNNEDELTRREYEVLTLLAEGINNKEIGDCLFISE 190 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 KTV + S + +K+ +A ++ I Sbjct: 191 KTVKNHVSNIFKKINVNDRTQAAIYAYKHNI 221 >UniRef50_B9XAQ5 Two component transcriptional regulator, LuxR family n=1 Tax=bacterium Ellin514 RepID=B9XAQ5_9BACT Length = 229 Score = 90.1 bits (222), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 51/204 (25%), Positives = 103/204 (50%), Gaps = 7/204 (3%) Query: 4 IIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +++DDHP+ +R ++ D+ + E A++ V++ KPD+V+ D+ +P NG++ Sbjct: 16 LLVDDHPMMREGLRQIIGNEIDLAVCGEAENAFQALELVKSEKPDLVLADITLPDKNGLE 75 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 +L+ L+ + ++++S ++ Y + AG G++ K EG I+ AI +G + Sbjct: 76 LLKDLQAQHPKLPVLVISMHDEALYAERVLRAGGRGYIMKHEGGKKIMQAIRHVLSGQIF 135 Query: 123 FPFSLNRFVGSLTSDQ------QKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 ++ + L S +++L+ +E V R I +G +IA M +S KTV Sbjct: 136 VSEKMSARILELFSGHGTQAASSPIENLTDREFEVFRLIGEGLSTKEIAANMHVSAKTVE 195 Query: 177 TYKSRLMEKLECKSLMDLYTFAQR 200 ++ + KL K+ +L + R Sbjct: 196 VHRMNIKTKLGLKTAAELIRYTVR 219 >UniRef50_C6VST2 Two component transcriptional regulator, LuxR family n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VST2_DYAFD Length = 199 Score = 89.7 bits (221), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 91/163 (55%), Gaps = 5/163 (3%) Query: 37 AVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGA 96 ++ R++ D++++D+ IPG G+ +++ LR+RQ I++ SA+++ AGA Sbjct: 28 SLARLDETNIDLIVLDLGIPGSAGVDMIKQLRERQPEVRILVFSARDESMNAPIYLRAGA 87 Query: 97 NGFVSKKEGMNNIIAAIEAAKNGYCYFPFSLN-RFVGSLTS----DQQKLDSLSKQEISV 151 NGF+ K + I A++ N Y L + + +LTS D D LS +E V Sbjct: 88 NGFLHKMSSQDEIRTALKTVINDKKYVSSQLQAQMLEALTSNKAIDANSYDGLSPREKEV 147 Query: 152 MRYILDGKDNNDIAEKMFISNKTVSTYKSRLMEKLECKSLMDL 194 + +LDG +I+E + + TVSTYK R+M+K+E +++DL Sbjct: 148 LHKMLDGDTIKEISESLRMKQSTVSTYKERIMQKMEATNIVDL 190 >UniRef50_B4DA09 Two component transcriptional regulator, LuxR family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DA09_9BACT Length = 249 Score = 89.7 bits (221), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 51/205 (24%), Positives = 104/205 (50%), Gaps = 8/205 (3%) Query: 4 IIIDDHPLAIAAI-RNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +++DDHP+ + + + ++ D+ + A A++ V PD+ ++D+ +P +G+ Sbjct: 21 LLVDDHPVVRDGLAQRIALEPDLSVCAACESVSRALREVTVHHPDLAVVDLSLPSGHGLD 80 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 +++ + R +++ S ++ YG+ +GA G+V K E + ++AAI +G Sbjct: 81 LIKEIHARYPEVRLLVFSMHDEQTYGERALLSGAQGYVMKDESPDEVLAAIRKVLSGRIS 140 Query: 123 FPFSLNRFVGSLTSDQQ-------KLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 L+ + + + +D LS +E+ V+ ++ GK IA+++ S KT+ Sbjct: 141 ISAHLSARLAEAAASTRGTRARKLPMDRLSNRELEVLEWMGQGKSVKAIAQRLERSAKTI 200 Query: 176 STYKSRLMEKLECKSLMDLYTFAQR 200 TY+ RL EKL +S +L A R Sbjct: 201 ETYRQRLKEKLNIESNSELIAHAAR 225 >UniRef50_D2BGT0 DNA-binding response regulator, LuxR family n=5 Tax=Dehalococcoides RepID=D2BGT0_DEHSV Length = 232 Score = 89.7 bits (221), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 60/193 (31%), Positives = 103/193 (53%), Gaps = 8/193 (4%) Query: 4 IIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +I DDH + + LL + DIE++ E +G AV V KPD+V++D+ +P + G++ Sbjct: 7 LIADDHAVLREGMSRLLSQEKDIEVVGEAGDGQEAVDMVAQFKPDVVLMDIVMPRLTGVE 66 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 + ++K S I+I++A +D Y +AGA+G++ K + I+ AI A K G Sbjct: 67 ATKLIKKNNPSTCILILTAYSDIRYILGLLEAGASGYLLKSAKSDEIVGAIRAIKAGESV 126 Query: 123 FPF-----SLNRFVG-SLTSDQQKL-DSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 L R V S SD+ K+ LS +E+ +++ G N +IA+K+ +S +TV Sbjct: 127 LDSIATRKLLERVVNVSKESDEDKVRGQLSPREVEILQLASKGLSNREIADKLTLSMRTV 186 Query: 176 STYKSRLMEKLEC 188 + S + K+ C Sbjct: 187 KAHLSNIFNKMRC 199 >UniRef50_A1ZFU2 Transcriptional regulator, LuxR family n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZFU2_9SPHI Length = 219 Score = 89.7 bits (221), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 64/213 (30%), Positives = 113/213 (53%), Gaps = 14/213 (6%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVE--TLKPDIVIIDVDIPG 57 + II DDH + + + L+ + NDIE++ G A + +E L DI ++DVD+P Sbjct: 7 IKVIIADDHHMVLEGLEALIKVTNDIEVIGLAYNGHHAFKLLELNQLDVDIAVLDVDMPV 66 Query: 58 VNGIQVLETLRK--RQYSGI-IIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIE 114 +G LET RK +Y I ++I++ N+ Y K AGA+G++ K G + ++ AI Sbjct: 67 QDG---LETTRKIRTEYPNIKVLILTMHNNESYIKEIIAAGASGYILKNRGASELVNAIR 123 Query: 115 AAKNGYCYFPFSLNRFVGSLTSDQQKLD-----SLSKQEISVMRYILDGKDNNDIAEKMF 169 G YF ++ + + +K L+K+E V+ I G +I++++F Sbjct: 124 TIYAGEEYFSKAVTDTLIKSIQESKKAKPNPQVKLTKREKEVLALIGKGMTTKEISKQLF 183 Query: 170 ISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNK 202 I++ TV T++ L++KLE K+ +L + +NK Sbjct: 184 IADTTVETHRRNLIDKLEVKNSKELILYVAKNK 216 >UniRef50_Q2W7M4 Response regulator n=3 Tax=Magnetospirillum RepID=Q2W7M4_MAGSA Length = 209 Score = 89.7 bits (221), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 54/202 (26%), Positives = 106/202 (52%), Gaps = 2/202 (0%) Query: 4 IIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQV 63 +I +D L + LL +D+ I+ E +G A++ TL PD+V++D+ +P ++G++ Sbjct: 6 LIAEDQQLVRQGLVALLAVDDVTIVGEAEDGKGAIEMARTLAPDVVLMDLSMPELDGVEA 65 Query: 64 LETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYF 123 +++ +++++ N AGA+G+ KK G ++AAI A G Y Sbjct: 66 TRRIKQVAPQVRVLVLTVANCERRVAEALAAGADGYALKKLGHGELMAAINAVCAGKTYL 125 Query: 124 PFSLNRFVGS--LTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKSR 181 L+ + L SL+ +E V++ I G N +IA+++ I+ KTV T++++ Sbjct: 126 GPGLSEDLVKEYLEGSDMGGGSLTAREREVLQLIARGHKNREIADELGIAIKTVETHRTK 185 Query: 182 LMEKLECKSLMDLYTFAQRNKI 203 +M+KL+ + +L +A R + Sbjct: 186 IMQKLDLHNSAELAAYAIRRGL 207 >UniRef50_B2JSN3 Two component transcriptional regulator, LuxR family n=28 Tax=Proteobacteria RepID=B2JSN3_BURP8 Length = 210 Score = 89.7 bits (221), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 110/201 (54%), Gaps = 3/201 (1%) Query: 4 IIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +I DDH + ++ ++ NDI + AE +G V ++ T D++++D+ +PG++G+ Sbjct: 5 LIADDHAIVRGGLKQIIATTNDIVVAAEAAQGSEVVDKLRTCAVDLLLLDMTMPGISGVD 64 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 ++ +R Q + ++++S ++ AGA G+++K + ++AAI +G + Sbjct: 65 LIRRVRAEQPALPVLVLSIHDEAQVASRALRAGATGYLTKDSDPDVLLAAIRKLADGGRF 124 Query: 123 F-PFSLNRFV-GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKS 180 P ++ V + D + LS +E V++ + GK N+IA+ +S KT+ST+K Sbjct: 125 IDPKLVDAMVFETHRGDMPPHEVLSDREFQVLQMLAAGKSINEIADICALSAKTISTHKM 184 Query: 181 RLMEKLECKSLMDLYTFAQRN 201 RLM+KL + ++ +A R+ Sbjct: 185 RLMQKLGLANNAEVIRYAIRH 205 >UniRef50_C7PF69 Two component transcriptional regulator, LuxR family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PF69_CHIPD Length = 208 Score = 89.4 bits (220), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 61/201 (30%), Positives = 111/201 (55%), Gaps = 11/201 (5%) Query: 2 NAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGS---AVQRVETLKPDIVIIDVDIPGV 58 N +++DD + L+++ I+ A+++E GS ++ + T K D+VI+D+D+PG Sbjct: 3 NILVVDDQEVVRYGT-TLILQKSIDD-AQVSEAGSFEDTLKILSTKKFDLVILDIDMPGG 60 Query: 59 NGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKN 118 N Q+L+ +R R I+I S+ ++ +G +AGA+GF+SKK G+ I A + Sbjct: 61 NNHQMLDVIRLRHPDIRILIFSSYDEQIFGWRYLEAGADGFLSKKTGIEEIKNAAKTLLR 120 Query: 119 GYCYFPFS-----LNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 Y + LN F S + LS +E ++M+ ++ G +IA+K+ + Sbjct: 121 DEKYLSPTLKQTLLNNFTNK-KSATNPIQRLSSRENNIMQLLIKGSSVAEIADKLSLQIS 179 Query: 174 TVSTYKSRLMEKLECKSLMDL 194 TVSTYK R+ EKL+ +++++ Sbjct: 180 TVSTYKKRIFEKLQVSNVIEM 200 >UniRef50_C6XAP6 Two component transcriptional regulator, LuxR family n=3 Tax=cellular organisms RepID=C6XAP6_METSD Length = 214 Score = 89.4 bits (220), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 50/201 (24%), Positives = 103/201 (51%), Gaps = 3/201 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH + + + LL ++ I+++AE G A Q PD+ ++D+ +PG+ Sbjct: 6 IRVLLVDDHTVVRSGLCRLLEQHSGIKVVAEAESGEQAYQVFGEYLPDVTVMDLSMPGMG 65 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + + R + ++I S + + +GA G+V+K + ++ A+ G Sbjct: 66 GLEAMRRILARYRTARVLIFSMHENAAFAMQTLKSGARGYVAKTGSFDELVKAVVEVARG 125 Query: 120 YCYFPFSLNRFVG--SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 Y S+ + + ++ D + LS +E V R +GK+ +IAE + IS KTV+ Sbjct: 126 KSYISTSIAQKIALQTVIGDGDLISQLSPREFEVFRLFAEGKNAEEIAEVLKISQKTVAN 185 Query: 178 YKSRLMEKLECKSLMDLYTFA 198 Y + + +KL + +++ FA Sbjct: 186 YHTLVKQKLGLSNPVEMVRFA 206 >UniRef50_Q9RU37 DNA-binding response regulator n=3 Tax=Deinococci RepID=Q9RU37_DEIRA Length = 225 Score = 89.4 bits (220), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 56/198 (28%), Positives = 103/198 (52%), Gaps = 5/198 (2%) Query: 4 IIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +++DDH + +R L + IE++ E G A+Q E L+P++V++D+ +P ++GI Sbjct: 17 LLVDDHAVVRQGLRLFLGLDEGIEVVGEAANGEEALQEAERLRPEVVVMDLMMPVMDGIT 76 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 LR+R +I +++ + +AGA ++ K + + AI AA G Sbjct: 77 ATRELRRRLPDTEVIALTSTLEENKVNGAIEAGAISYMLKDASSDTLADAIHAAARGEVR 136 Query: 123 F-PFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKSR 181 P + R V S + + +SL+ +E +V++ + G+ N DIA + +S TV T+ SR Sbjct: 137 LHPEAARRLVRDFRSPEMR-ESLTPKETAVLQLLARGQSNKDIAAEQGVSEATVKTHVSR 195 Query: 182 LMEK--LECKSLMDLYTF 197 L+ K L+ ++ LY Sbjct: 196 LLSKLGLDSRTQAALYAL 213 >UniRef50_Q1GZT3 Two component transcriptional regulator, LuxR family n=10 Tax=Proteobacteria RepID=Q1GZT3_METFK Length = 215 Score = 89.4 bits (220), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 54/204 (26%), Positives = 104/204 (50%), Gaps = 4/204 (1%) Query: 4 IIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +I DDH + ++ +L + DIE++A+ A++ T D+V++D+ +P +GI+ Sbjct: 10 VIADDHAILREGLKQILAETEDIEVVADAKNAAEAIKLAGTKGLDVVVLDISLPDRSGIE 69 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 ++K ++++S + Y AGA G++SK+ + ++ AI G Y Sbjct: 70 ACNIIKKEHPGVAVLMLSMHREDAYAIRALRAGAVGYLSKQSASDQLVTAIRTVAKGKKY 129 Query: 123 FPFSLNRFVGSLTS---DQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 + + S ++ D+LS +E + I G ++IAE + +S KTVS Y+ Sbjct: 130 ISAEVALALADQVSGGLEKPIHDTLSNREFQTLTMIASGLSVSEIAENLSLSVKTVSMYR 189 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 +RL+EKL + +L +A +N + Sbjct: 190 ARLLEKLNLRHNAELTHYAIKNNL 213 >UniRef50_Q1D626 DNA-binding response regulator, LuxR family n=2 Tax=Cystobacterineae RepID=Q1D626_MYXXD Length = 223 Score = 89.4 bits (220), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 57/208 (27%), Positives = 107/208 (51%), Gaps = 12/208 (5%) Query: 5 IIDDHP-LAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQV 63 +++D P L ++ L ++E++ EG +AV+ + L+P +V++D+++PG+NGIQV Sbjct: 10 VVEDQPQLLKNLVKVLATFPELEVVGTSQEGEAAVEDIVQLRPQLVLLDLELPGINGIQV 69 Query: 64 LETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAI-EAAKNGYCY 122 + +++R I+I+++ +D AGA+G++ K+ G I + I E + G Sbjct: 70 TQRVKRRAPEVEILILTSFDDETKVYEAIQAGASGYLVKRVGPEKIRSGIQEVMEGGTVL 129 Query: 123 FPFSLNRFVGSLTSDQ-------QKLD---SLSKQEISVMRYILDGKDNNDIAEKMFISN 172 P RF S Q +KL+ +L+ E V+RY+ G N ++ M + Sbjct: 130 EPIIAKRFWNYFQSVQAKSTQAEKKLENPWALTPLEFEVLRYVAKGLSNAEVGHVMTLER 189 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQR 200 +TV T+ S + K+ S ++ A R Sbjct: 190 RTVRTHLSHIYRKMGVNSHVEAVVMALR 217 >UniRef50_C4ZL17 Two component transcriptional regulator, LuxR family n=1 Tax=Thauera sp. MZ1T RepID=C4ZL17_THASP Length = 213 Score = 89.4 bits (220), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 51/190 (26%), Positives = 101/190 (53%), Gaps = 5/190 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKNDIE-ILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 M +I+DDHP+ +R L+ + + ++ E + A+++V + ++ ++D+ +P + Sbjct: 1 MKLLIVDDHPVMRFGVRQLVTQRWPDAVIGEASCLAQALEQVRAAEWELAVLDLSMPDTS 60 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ L L + ++++S ++ Y GA G+++K+ ++AAIE ++G Sbjct: 61 GLEGLVRLHRAAPLTRLLVLSMHDEAAYAARALQLGAAGYLTKEHATTELVAAIERVRSG 120 Query: 120 YCYFPFSLNRFVGSLTSDQQKL----DSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 Y L + L S + ++LS QE V+ I G ++IAE M +S KTV Sbjct: 121 QRYISSDLAARLADLLSGEAPARAPHETLSAQEYRVLLLIAAGHGASEIAEIMHLSVKTV 180 Query: 176 STYKSRLMEK 185 TY+SR+++K Sbjct: 181 GTYRSRIIDK 190 >UniRef50_C1SMK1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SMK1_9BACT Length = 219 Score = 89.4 bits (220), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 52/204 (25%), Positives = 109/204 (53%), Gaps = 7/204 (3%) Query: 2 NAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 + IIDDH + + ++ + D+E+ +G A+Q++ ++PDI+I+D+ + +G Sbjct: 5 SVFIIDDHAVVREGLAMVINQEADMEVCGSADDGPVALQKLFNIEPDIIIVDLSLTTSDG 64 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 ++V++ ++ R + I+++S + + + + C AGA+G+V K E + II A+ G Sbjct: 65 LEVIKAIKARYPNIFILVLSMREEMVFAERCVRAGASGYVMKSEKPSVIIEALRKIIKGK 124 Query: 121 CYFPFSLNRFVGSLT------SDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 YF + ++ + D+ +++L+ +E V + I +G IA K+ +S KT Sbjct: 125 IYFSEKMTEYILNKAMNVKNCEDKDVVEALTDREFQVFQMIGNGFTTKQIATKLNLSVKT 184 Query: 175 VSTYKSRLMEKLECKSLMDLYTFA 198 + ++ + KL KS +L +A Sbjct: 185 IDAFRESMKHKLGLKSAPELSQYA 208 >UniRef50_D1XLE6 Two component transcriptional regulator, LuxR family n=3 Tax=Streptomyces RepID=D1XLE6_9ACTO Length = 231 Score = 89.0 bits (219), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 109/204 (53%), Gaps = 14/204 (6%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 ++ +++DD P+ A + +L + DI + +G AV+ L+PD++++D+ +P + Sbjct: 15 ISVLVVDDEPVIRAGLSAILDSQADITVAGTADDGEQAVEACARLRPDVLLMDIRMPRRD 74 Query: 60 GIQVLETLRKRQYSGI----IIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEA 115 G+ L L +R G +++++ + Y AGA+GF+ K + A+ A Sbjct: 75 GLWALAELGRRGLLGPGRSRVLMLTTFDLDAYVDDALTAGASGFLLKNSSYEQLTEAVRA 134 Query: 116 AKNGYCYFPFSLNRFV--GSLT-----SDQQ--KLDSLSKQEISVMRYILDGKDNNDIAE 166 A G+ ++ R + G L+ SDQ+ +L L+++E+ V+R I DG N +IA Sbjct: 135 AAAGHSALSPAVTRRIIEGHLSGRPRPSDQELARLRDLTEREVDVLRLIRDGLSNAEIAG 194 Query: 167 KMFISNKTVSTYKSRLMEKLECKS 190 ++ +S TV T+ SR++ K C+S Sbjct: 195 ELVVSLHTVKTHVSRVLMKTGCQS 218 >UniRef50_D2Q428 Two component transcriptional regulator, LuxR family n=9 Tax=Actinobacteria (class) RepID=D2Q428_9ACTO Length = 213 Score = 89.0 bits (219), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 61/209 (29%), Positives = 112/209 (53%), Gaps = 12/209 (5%) Query: 4 IIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQV 63 +++DDH + A +R+ I ++I+ E + SAV+ + +PD+V++DV +PG G +V Sbjct: 7 VVVDDHDMFRAGVRSE-IGASVDIVGEGADVDSAVKAIVAAEPDVVLLDVHLPGGGGTEV 65 Query: 64 LETLRKR--QYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 121 ++ + +R + + + VS + G AGA G+V+K ++ AI +G Sbjct: 66 MKQVHQRHPEVKFLALSVSDAAEDVIG--VIRAGARGYVTKNISGTELVDAIGRVADGDA 123 Query: 122 YFP-----FSLNRFVGSL--TSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 F F L+ F G++ S + LD LS++E V+R I G ++A ++FIS KT Sbjct: 124 VFSPRLAGFVLDAFSGAIDIASVDEDLDRLSQREREVLRLIARGYAYKEVARELFISVKT 183 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 V T+ S ++ KL+ + +L +A ++ Sbjct: 184 VETHVSSVLRKLQLSNRHELTRWATDRRL 212 >UniRef50_C1TRD8 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TRD8_9BACT Length = 222 Score = 89.0 bits (219), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 53/211 (25%), Positives = 112/211 (53%), Gaps = 11/211 (5%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH + + N L +++DIE++ E +G A++ ++ + D+ ++DV +P + Sbjct: 5 IRVLVVDDHAIFRTGVINTLSLEDDIEVVGEAGDGLEALEFMKKVDFDVALVDVTMPRMG 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++++ + + + +I ++A D + AG GFV K G + +I+AI G Sbjct: 65 GVELVSKMEETGMARSVIALTALEDDRDMVFLSKAGVKGFVLKTSGFDELISAIRTVSGG 124 Query: 120 YCYFPFSLNRFVGSL-------TSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 Y +R G L TS ++ + LS++E+ V+ ++ G + +IAE++ +S+ Sbjct: 125 DNYVD---SRAAGKLLNCFSEDTSRERGMSRLSERELEVLYWLAQGLNGQEIAERLSLSD 181 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 KTV + S ++ KL+ +A R+ + Sbjct: 182 KTVKNHISHILAKLKVSDRTQAVAWAWRSGL 212 >UniRef50_C7QHJ1 Two component transcriptional regulator, LuxR family n=29 Tax=Actinobacteria (class) RepID=C7QHJ1_CATAD Length = 222 Score = 89.0 bits (219), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 48/184 (26%), Positives = 93/184 (50%), Gaps = 6/184 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I+DDHP+ +R + D E++ E ++G A+ R PD+V++D+ +P + Sbjct: 12 LRLLIVDDHPIVRDGLRGVFDGEDGFEVVGEASDGAQALVRAAESGPDVVLMDLRMPTMG 71 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + LR Q + +++++ + +AGA G++ K ++I A+ AA G Sbjct: 72 GVEAIRRLRVEQPAVRVLVLTTYDTESDVLPAIEAGATGYLLKDAPREDLIRAVRAAAAG 131 Query: 120 YCYFPFS-----LNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 + + R L D+L+++E+ V+R + G N + A K+FIS T Sbjct: 132 QPVLAPTVAQRLMTRVQTPLAEPAPPGDALTERELEVLRLVASGTTNRETARKLFISEAT 191 Query: 175 VSTY 178 V T+ Sbjct: 192 VKTH 195 >UniRef50_C8WS10 Two component transcriptional regulator, LuxR family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WS10_ALIAD Length = 224 Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/203 (27%), Positives = 107/203 (52%), Gaps = 3/203 (1%) Query: 4 IIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIP-GVNGI 61 +I+DDH L +R +L IE++ E + G A++ +PD++++DV +P G++GI Sbjct: 7 VIVDDHALVRQGLRLILHGVAGIEVVGECSCGEDALKAAVKDRPDVMLMDVHMPQGLDGI 66 Query: 62 QVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 121 LR+ +I+++ +D + + DAG +G V K + + I+AAI+ + G+ Sbjct: 67 TTARHLRQIAPQVRVIMLTMFDDRVHVEKMLDAGVSGIVFKHDDSSEIVAAIQHGQPGHP 126 Query: 122 YFPFSLNRFVGSLT-SDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKS 180 Y + + T S + + LS +E V+ + G N ++A+ + IS KTV T++ Sbjct: 127 YLSRRWGQRANAETVSPSRTAERLSPRETEVLVLLAQGYTNREVADALHISVKTVETHRQ 186 Query: 181 RLMEKLECKSLMDLYTFAQRNKI 203 +M ++ S L +A +N + Sbjct: 187 HIMRRIGLHSRAALVRYAYQNGL 209 >UniRef50_C7RBI1 Two component transcriptional regulator, LuxR family n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RBI1_KANKD Length = 212 Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 51/209 (24%), Positives = 108/209 (51%), Gaps = 6/209 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH + + +LL K+ D ++AE + G AV++ +P + +ID+ +P +N Sbjct: 2 IRVMLADDHTILRQGLVSLLSKDADCTVVAEASNGLEAVEKALETRPQVAVIDISMPELN 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++V++ + + I++++ + Y H AGA+G++ K +I A++A G Sbjct: 62 GMEVVKRIHDKLPECKILVLTMHEEQEYVIHMVRAGASGYLLKDSASEELIDAVKALATG 121 Query: 120 YCYFPFSLNRFVGSLTSD-----QQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 Y+ + + S Q +L+++E V ++DGK DIA + IS KT Sbjct: 122 KTYYSQYAASVLATQYSQPDKEWQDPYKNLTQREREVFHLVVDGKTTKDIARTLDISVKT 181 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 ++ ++++KL + +L +A ++ + Sbjct: 182 AENHRGKVLDKLGVSNTAELVRYAAKHNL 210 >UniRef50_B4CVL8 Two component transcriptional regulator, LuxR family n=2 Tax=Chthoniobacter flavus Ellin428 RepID=B4CVL8_9BACT Length = 217 Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 110/208 (52%), Gaps = 8/208 (3%) Query: 4 IIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +I DDH + +R ++ + E+ E + G AV+ VE L+P IV++DV +P +NG++ Sbjct: 7 LIADDHQVMRRGVRAVVELLEGWEVCGEASTGREAVEMVEKLQPQIVVMDVTMPELNGLE 66 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 ++K + I++ + + +AGA ++ K +G + AA+ A Y Sbjct: 67 ATRQIKKIAPATEILMFTGLETEELIRQVFEAGARSYILKTDGREQLEAALTALAAHKPY 126 Query: 123 FPFSLNRFV------GSLTSDQQKLDS-LSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 F + + G ++Q +D L+ +E +++ + +G N ++A+ + IS KTV Sbjct: 127 FTTQVGEILFAKFLHGKPKDEEQTVDGRLTDREREIVQLLAEGASNKEVADSLGISVKTV 186 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKI 203 T+++ +M+KL+ KS DL +A RN I Sbjct: 187 ETHRAAIMKKLKFKSFSDLVRYAIRNHI 214 >UniRef50_B1ZI39 Two component transcriptional regulator, LuxR family n=5 Tax=Methylobacterium RepID=B1ZI39_METPB Length = 222 Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 52/204 (25%), Positives = 102/204 (50%), Gaps = 6/204 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 ++ ++ DDHP+ + +L+ +I ++A + G +A + + +PD+ I+D+++P +N Sbjct: 6 IHVVLADDHPVFRHGVTSLIADSGEIVVVASVETGAAAYRAIVQHEPDVAILDINMPEMN 65 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ VL L + I++S Y +AGA G+V K+ NI +A+ A G Sbjct: 66 GVTVLRHLARTGARTQAIMLSVYESRVYIDQAFEAGARGYVLKRSAFQNIASAVRAVHAG 125 Query: 120 YCYFPFSLNRFVG-----SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 Y +L S + D +LS++E ++R++ G + ++A+++ + K Sbjct: 126 GIYLDPALPERTAPHRRLSSSVDDAACSTLSERERDILRFVAFGFTSKEVADRLGATAKA 185 Query: 175 VSTYKSRLMEKLECKSLMDLYTFA 198 + T K+R KL S + FA Sbjct: 186 IETQKARACTKLGLASRAQIVQFA 209 >UniRef50_A6BYP5 Response regulator receiver domain protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6BYP5_9PLAN Length = 221 Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 111/203 (54%), Gaps = 9/203 (4%) Query: 4 IIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +I+DDHP+ L+ ++D+++ E A++++ PD++I+D+ + +G++ Sbjct: 12 MIVDDHPIVREGYSRLIEHQDDLQVCGEADSKVDAIRKIMENPPDLIIVDISLKDGSGLE 71 Query: 63 VLETLRKRQYSGI-IIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 121 +++ + K Q+S I ++ VS ++ + + AGA G+V+K++ +I AI G Sbjct: 72 LIKDV-KAQFSQIKMLTVSMHDETLFAERSLRAGALGYVNKQQAPEQLIKAIYQVLKGKV 130 Query: 122 YFPFSLN-----RFVGSLT-SDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 Y ++ R +GS SDQ ++SLS +E+ V I +G+ IA+K+ +S+KTV Sbjct: 131 YLSAAVTERMICRSIGSDNYSDQSPIESLSDRELEVFEQIGEGETTRSIAQKLNLSSKTV 190 Query: 176 STYKSRLMEKLECKSLMDLYTFA 198 TY+ + KL ++ L A Sbjct: 191 ETYRENIKHKLNLENATALTRHA 213 >UniRef50_C9PHC7 Putative two-component response regulator n=1 Tax=Vibrio furnissii CIP 102972 RepID=C9PHC7_VIBFU Length = 201 Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 57/193 (29%), Positives = 103/193 (53%), Gaps = 8/193 (4%) Query: 3 AIIIDDHPLAIAAIRNLLIKNDI-EILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGI 61 A+I++ +PL A+ +++ ++ + + T A + V + + V+++V+ +G+ Sbjct: 8 ALIVNPYPLEQHALEDIVKSTNLFQHIHFATSAAEAYRVVSQVPVNFVLLEVEAYDASGL 67 Query: 62 QVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 121 +L LR + ++G I+ +SA + Y GANG++ K E + I AI + GY Sbjct: 68 DILRRLRAKGFTGKILFISAIDKAMYSNATHKLGANGYLLKSEELPVIQEAITSVMRGY- 126 Query: 122 YFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKSR 181 N F + ++ LSK+E V Y+L G N I+E + IS+KTVSTYK+R Sbjct: 127 ------NVFKHESRNKERDGTELSKRETVVYHYLLAGMTNKKISELLSISSKTVSTYKTR 180 Query: 182 LMEKLECKSLMDL 194 ++ K KS+++L Sbjct: 181 ILTKYGVKSVIEL 193 >UniRef50_Q09C30 Two-component system regulatory protein n=3 Tax=Proteobacteria RepID=Q09C30_STIAU Length = 213 Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 54/194 (27%), Positives = 96/194 (49%), Gaps = 8/194 (4%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 +N +++DDH L IR+LL D+ ++ E ++G AV+RV L PD+V++DV +P + Sbjct: 2 INIVLVDDHALIREGIRSLLEFTPDLHVVGEASDGEEAVKRVRELSPDVVLMDVRMPRMT 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ L +R+ +++++ ++ AG GF+ K + + AI NG Sbjct: 62 GLEALRAMRREAPERRVVLLTTFDEDSVVVEALRAGVKGFLLKDVTRDQLADAIRRVANG 121 Query: 120 YCYFPFSL-NRFVGSLTSDQQKL------DSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 P + R T Q+ + L+++E+ VMR I G N +IA + + Sbjct: 122 ETLLPPGVAERVQRGFTEVPQEFPHAELPEGLTRRELEVMRLIARGLSNREIATVLGTAE 181 Query: 173 KTVSTYKSRLMEKL 186 TV S ++ KL Sbjct: 182 GTVKNQTSNILAKL 195 >UniRef50_A6Q7X9 Two-component response regulator n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6Q7X9_SULNB Length = 223 Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 62/208 (29%), Positives = 108/208 (51%), Gaps = 11/208 (5%) Query: 5 IIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQV 63 I DDH L + + ++ ND+ I E + ++ +E PD++I+D+++ NG+ Sbjct: 6 IADDHELIRSGLSMIIEAHNDMHIHTEASSYTELLEALEKAVPDLLILDLNLGDTNGLST 65 Query: 64 LETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYF 123 LE + S I+++SA + Y GA+G+++K + +I AI G Y Sbjct: 66 LENISSLYPSVPILVLSAYPEEIYALRTFKNGASGYLNKSIVSSELIDAITTIMRGKKYI 125 Query: 124 PFSLNRF-----VGSLTSDQQK--LDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 N+F +G+ ++K ++ LSK+E V+ I G+ +IAE M +S KT+S Sbjct: 126 S---NKFEEILPLGTDLGKEEKDLVEILSKREFEVLNLIAAGQAPKEIAENMNVSPKTIS 182 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKIG 204 TY++R+MEKL ++ L FA +G Sbjct: 183 TYRTRIMEKLSFETTSQLQRFAYETFMG 210 >UniRef50_A5FMH2 Two component transcriptional regulator, LuxR family n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FMH2_FLAJ1 Length = 211 Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 109/203 (53%), Gaps = 4/203 (1%) Query: 4 IIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +++DDHP+ I+ I LL D IEI+ ++ G + +E + D+V+ID+ +P V GI Sbjct: 8 VVVDDHPIVISGISGLLSDLDNIEIVEKMQSGALLLDYIENNEVDLVLIDIFLPVVTGID 67 Query: 63 VLETLRKRQYSGIIII-VSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 121 + + + K++YS +I+I +S++++ G NG++ K I A G Sbjct: 68 LCKAI-KQKYSQVIVIGMSSQSERSLVMQFIQNGGNGYILKSASFEEFKNCINKAIEGEI 126 Query: 122 YFPFSLNRFVGS-LTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKS 180 F + V L+ D + SLS++E + + GK +IA+++F+S TV T++ Sbjct: 127 VFSDEVKTIVSQPLSEDLDNIPSLSRREKDIALLLSKGKQTQEIADELFLSFLTVQTHRR 186 Query: 181 RLMEKLECKSLMDLYTFAQRNKI 203 +++K + K++ +L T +N + Sbjct: 187 NILQKYKTKNVAELITLLLKNNL 209 >UniRef50_C1TL94 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TL94_9BACT Length = 215 Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 100/208 (48%), Gaps = 13/208 (6%) Query: 4 IIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 II DDH L + +R++L + +D+++LA G A++ PD+V++DV +P +NGI+ Sbjct: 5 IIADDHELFLEGVRDILSREDDLDVLALARTGQEALELTLQHHPDVVVMDVTMPKMNGIE 64 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 ++ I+ +S D AGA+G+ K+ +I AI +G Y Sbjct: 65 ASRRIKSSLGDVKILALSMHADKRLIAEILKAGASGYALKEGSSEELIRAIHIVSSGETY 124 Query: 123 FPFSLNRFVGSLTSDQQKL---------DSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 + L D KL LS +E V+ + G ++A + IS Sbjct: 125 LS---PKIASILIKDYLKLLDTAVPSRASLLSDREREVLALLAKGSSTKEVASSLHISKN 181 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQRN 201 TV T++ R+MEKL+C ++ +L FA R Sbjct: 182 TVDTHRRRIMEKLDCGNIAELIRFAIRE 209 >UniRef50_B1Y741 Two component transcriptional regulator, LuxR family n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y741_LEPCP Length = 205 Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 47/203 (23%), Positives = 106/203 (52%), Gaps = 4/203 (1%) Query: 5 IIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQV 63 + DDHP+ +R +L+ + ++AE +G A+ + D+ ++D +PG +G+ + Sbjct: 1 MADDHPVVRQRLRQILMAEPALTVVAEAGDGDEALALARSTDWDLALLDFSMPGCSGLSL 60 Query: 64 LETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYF 123 +E +R+ ++++S ++ H AGA+G++ K+ +I AI A G + Sbjct: 61 IEHVRRDFPQRPVLVLSVHDEQLLAPHVLRAGASGYLCKECATEQLIQAIRAVTAGGTHV 120 Query: 124 PFSLNRFVG---SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKS 180 + + + ++ S + LS +E VM + G+ +IA+++ + +TV++Y+ Sbjct: 121 SAPVAQRLAWQVAIESGGAPHERLSDREYRVMWLLSSGRHIVEIAQELHLRPRTVASYRH 180 Query: 181 RLMEKLECKSLMDLYTFAQRNKI 203 R++ KL +L ++A R+++ Sbjct: 181 RVLRKLGLHDTAELVSYAVRHEL 203 >UniRef50_B4X460 Response regulator receiver domain protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4X460_9GAMM Length = 220 Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 52/196 (26%), Positives = 108/196 (55%), Gaps = 16/196 (8%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLK-P---DIVIIDVDIP 56 M +++DDH L + IR++L K D EI ++TE S + ++ L+ P D+ +ID+ +P Sbjct: 1 MRVLVVDDHQLFLDGIRHILEKLDKEI--QITEANSVEKAIQALEHPQELDLALIDLCMP 58 Query: 57 GVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAA 116 G++GI +L++LR+R+ +++VS +++ + + GA GF+ K G ++ A+ Sbjct: 59 GMDGIALLQSLRERKLRLPVVVVSGEDNAAKIRSALELGALGFIPKSYGSQQMLDALNGV 118 Query: 117 KNGYCYFPFSLNRFVGSLTSDQQKLDS----------LSKQEISVMRYILDGKDNNDIAE 166 G Y P + + + L++ + L++ +++++ V++ + G N IA Sbjct: 119 LEGDIYLPDHIEQQINRLSTRRPPLEAEANLALKTSGITRRQYDVLQLMAQGYSNKQIAS 178 Query: 167 KMFISNKTVSTYKSRL 182 +F++ TV ++ S L Sbjct: 179 TLFLTEHTVKSHVSAL 194 >UniRef50_A3YAJ1 Two-component system regulatory protein n=1 Tax=Marinomonas sp. MED121 RepID=A3YAJ1_9GAMM Length = 209 Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 53/189 (28%), Positives = 103/189 (54%), Gaps = 3/189 (1%) Query: 4 IIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +++DD L I +LL + +E++A+L G + ++ ++ KPD++++D+ +P ++GI+ Sbjct: 6 LLVDDQNLIRMGIASLLGLTGKVEVVAQLDNGLNVIESIKRFKPDVMLLDIKMPKMSGIE 65 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 VL + ++ S I+++A +H GA G++ K + ++ A+E G + Sbjct: 66 VLALMNEKNISLPTIMLTAFEEHHLVLESIRLGAKGYIRKDVSLELLLTAVEKVYAGEVF 125 Query: 123 F-PFSLNRFVGSLTS-DQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKS 180 P ++ T+ ++ K D LS EI V+R I G NN+I+E MF S T+ S Sbjct: 126 VQPVVTSQISEEKTAQNENKQDGLSSNEIQVLRLIAAGYSNNEISEIMFKSAGTIRNKVS 185 Query: 181 RLMEKLECK 189 ++ KL+ + Sbjct: 186 FILAKLQVR 194 >UniRef50_B4EY67 Nitrate/nitrite response regulator n=9 Tax=Enterobacteriaceae RepID=B4EY67_PROMH Length = 207 Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 53/193 (27%), Positives = 113/193 (58%), Gaps = 11/193 (5%) Query: 4 IIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVET---LKPDIVIIDVDIPGVNG 60 +I+DDHP+ +R LL++ D E + ++E G+A + + T L PD++++D+ + G +G Sbjct: 7 MIVDDHPIMRYGLR-LLLEQDKEFIV-VSESGNAQEAITTAKQLNPDLIMMDLHLQGRSG 64 Query: 61 IQVLETLRKRQYSGIIIIVS---AKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAK 117 I ++ +LR+ + ++++S ++ND + DAGANG++ K+ ++ ++ ++ A Sbjct: 65 IDIIRSLRRCGLTSYVLVLSISDSRNDVYAA---LDAGANGYLLKECELDMLLLSLRKAV 121 Query: 118 NGYCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 G + + +++ + L +L+K+E+ V++ + G N IAE +FIS +TV Sbjct: 122 VGRPVYSEKVWQYIQLRQNYSDPLSALTKRELDVLQEVAVGMKNKQIAENLFISEETVKV 181 Query: 178 YKSRLMEKLECKS 190 + +++KL+ S Sbjct: 182 HIRNILKKLQVTS 194 >UniRef50_A1K2Y1 DNA-binding response regulator n=7 Tax=Betaproteobacteria RepID=A1K2Y1_AZOSB Length = 211 Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 61/207 (29%), Positives = 111/207 (53%), Gaps = 4/207 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 ++ I+DDH + A R +L + D+ I+ E G A+ RV D++++D+ +PG + Sbjct: 2 LHLAIVDDHAIVRAGFREMLATETDLHIVFEAATGEDALARVADTGCDLLLLDLSLPGQS 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ VL TLR+R S +++++ + Y GA+G++ K + ++ AI G Sbjct: 62 GVDVLRTLRRRGDSTRVLVLTGFPEDRYAVAMIRLGADGYLCKNCERDELVQAIRTIAQG 121 Query: 120 YCYFPF-SLNRFVGSLTSDQQKL--DSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 Y + G + D + LS++E+ V + G+ + IA+ + +S KTVS Sbjct: 122 RRYLSARTAELLAGEIAGDGSGAAHEQLSERELQVFLRLAHGESVSAIADALHLSIKTVS 181 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKI 203 TY+SR++EKL+ S +L T+A R+ + Sbjct: 182 TYRSRVLEKLDVTSNAELATYAIRHGL 208 >UniRef50_UPI00016C48EF two-component response regulator n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C48EF Length = 220 Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 50/191 (26%), Positives = 96/191 (50%), Gaps = 2/191 (1%) Query: 4 IIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 ++ DDH + +R L+ + D+E++ E G V V +P ++ +D+ +PG Sbjct: 7 VLADDHVILREGLRALISAQPDLEVVGEAASGTETVDCVRATEPRVLCLDLSMPGWGSAT 66 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 + + + +++++ ND Y + AGA G+ K +++AAI A G Sbjct: 67 TITRVTQLAPRTRVLVLTMHNDPAYVRSALAAGAAGYFLKTTPSPDLLAAIRAVATGARV 126 Query: 123 FPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKSRL 182 +L +G ++ LS++E V+ ++ G + +IA+++F+S KTV TY++RL Sbjct: 127 IDPALGDVLGGPPPPAER-SQLSRRETEVLELLVKGLTHQEIADQLFLSVKTVETYRARL 185 Query: 183 MEKLECKSLMD 193 EK K+ D Sbjct: 186 REKTGLKTRAD 196 >UniRef50_C6VY14 Two component transcriptional regulator, LuxR family n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VY14_DYAFD Length = 212 Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/207 (28%), Positives = 109/207 (52%), Gaps = 9/207 (4%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK----NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIP 56 M+ +++D+H L + A++NLL +D++I T+G + PDI+++D+ + Sbjct: 1 MDIVLVDEHFLLVDALQNLLKSMPEVSDVDIY---TDGKEFIAERAAHPPDILVMDLALN 57 Query: 57 GVNGIQVLETLRKRQYSGI-IIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEA 115 G+N I++L+ R S + II++SA D KH GAN F+SK + + +I Sbjct: 58 GMNSIELLDICRSTLPSEMKIIVLSAVTDAQTVKHTIRRGANSFLSKSTALEEFLESIFQ 117 Query: 116 AKNGYCYFPFSLNR-FVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 G Y S+ V S+ S+++ + LS +E V+R + G +IA ++ +S T Sbjct: 118 VYKGKQYIGRSIRESLVNSVFSEEEVVLHLSPREKQVLRKVCSGHTIKEIAYELKLSTHT 177 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQRN 201 V Y +M+KL+ + DL +A ++ Sbjct: 178 VQYYHRSVMDKLKVRRTTDLIVYAMQH 204 >UniRef50_Q52376 Response regulator gacA n=286 Tax=Gammaproteobacteria RepID=GACA_PSEU2 Length = 214 Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 54/207 (26%), Positives = 109/207 (52%), Gaps = 7/207 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH L I +L D ++++ + G ++++ LKPD+V++DV +PG+ Sbjct: 2 IKVLVVDDHDLVRTGITRMLADIDGLQVVGQADSGEESLKKARELKPDVVLMDVKMPGIG 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + + ++ V+ + + AGA G+++K G+ ++ AI G Sbjct: 62 GLEATRKMLRSHPDIKVVAVTVCEEDPFPTRLLQAGAAGYMTKGAGLAEMVQAIRLVFAG 121 Query: 120 YCYFPFSLNRFVGSLTSDQQKL-----DSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 Y + + + +L S Q ++ D LS++EI + I+ + I++K+ +S KT Sbjct: 122 QRYISPQIAQQL-ALKSFQPQVNNSPFDLLSEREIQIALMIVGCQKVQTISDKLCLSPKT 180 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQRN 201 V+TY+ R+ EKL S ++L A R+ Sbjct: 181 VNTYRYRIFEKLSISSDVELALLAVRH 207 >UniRef50_C5NV86 Oxygen regulatory protein NreC n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NV86_9BACL Length = 206 Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 106/206 (51%), Gaps = 5/206 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 M ++IDDH L I+ LL N+ ++ + + ++++ D+ I D+ + Sbjct: 2 MKILLIDDHKLIKIGIKVLLEDNEEFSVIDDCSSKKEFLEKITNDSYDLFICDISLSDGT 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAA--K 117 G +L+ +++++ + +II+S D Y K GA+G+V+K I+ AI+ K Sbjct: 62 GYDILKVIKEKKINTKVIILSMHEDKSYIKKAFKLGASGYVTKSTAHEEILLAIDKVMFK 121 Query: 118 NGYCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 N Y L + ++++ LS++E V RYI++G DI EK+F+S KTV T Sbjct: 122 ND-IYLNEKYATIFYELFKEDKEIE-LSEREKEVGRYIVEGYTLTDIGEKLFLSVKTVDT 179 Query: 178 YKSRLMEKLECKSLMDLYTFAQRNKI 203 YK RLMEK K +L + + N I Sbjct: 180 YKKRLMEKTNTKKRSELVEYLKSNLI 205 >UniRef50_Q1NT91 Regulatory protein, LuxR:Response regulator receiver n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NT91_9DELT Length = 227 Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 62/198 (31%), Positives = 104/198 (52%), Gaps = 15/198 (7%) Query: 4 IIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +++DDHPL ++ + LL + D+E++ + SA+ L+PDI+++D+ + +GI Sbjct: 10 LVVDDHPLLLSGLGMLLNAEEDLEVVGQTDRAESALTLAGELEPDIILLDITLSDTSGID 69 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 +L L + +I+++ + Y + AGA GFV KK +++ A+ G Y Sbjct: 70 LLPRLLEITPQSQVIMLTMHENQRYLQLAMQAGARGFVLKKGLDADLLYAVRTVYRGEVY 129 Query: 123 -FPFSLNRFVGS------LTSDQQKLD-------SLSKQEISVMRYILDGKDNNDIAEKM 168 P L FVG +QQ D SLS++E VM + G + +IA + Sbjct: 130 VHPSMLLEFVGGDGGQAKHRENQQAGDHQSQLWHSLSQREQQVMLAVAQGHTSREIAARY 189 Query: 169 FISNKTVSTYKSRLMEKL 186 F+S+KTV+TY+SR M KL Sbjct: 190 FVSDKTVTTYRSRAMTKL 207 >UniRef50_B1ZVR4 Two component transcriptional regulator, LuxR family n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZVR4_OPITP Length = 223 Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/209 (28%), Positives = 117/209 (55%), Gaps = 15/209 (7%) Query: 2 NAIIIDDHPLAIAAIRNLLIKNDIE--ILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDHP+ +A +R LL ++ E ++ E + +A + E L+PD++++D+ + G + Sbjct: 7 SVLVVDDHPVVVAGLR-LLFESAAEFRVVGEARDAFTARRLTEELRPDLIVLDLVLGGRD 65 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++++E L + +++ S++++ Y + AGA G+VSK G++ + A+ G Sbjct: 66 GLELIEDLLALHETTKVLVYSSQDEVQYARRALRAGARGYVSKTAGLDAVGVALTTIAQG 125 Query: 120 YCYFPFSLNRFVGSLTSDQQK---------LDSLSKQEISVMRYILDGKDNNDIAEKMFI 170 Y ++ R SL D + +D+LS +E+ V R + G + D+A ++ + Sbjct: 126 DVYVSATVQR---SLVRDYAESARGVAPAPIDALSNRELQVFRLLGTGLGSADVASELRL 182 Query: 171 SNKTVSTYKSRLMEKLECKSLMDLYTFAQ 199 S KTVSTY+ RL KL ++ +L A+ Sbjct: 183 SLKTVSTYRERLKNKLALENARELERAAE 211 >UniRef50_Q483K5 DNA-binding response regulator, LuxR family n=1 Tax=Colwellia psychrerythraea 34H RepID=Q483K5_COLP3 Length = 208 Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/201 (27%), Positives = 111/201 (55%), Gaps = 3/201 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + A+I+DDHPL IR LL + ++E++ + + + + PD+ ++D+ + G + Sbjct: 2 IKAVIVDDHPLFRQGIRLLLESSGNVEVIGDASNAIEGERLIMGKLPDVAVLDIGLVGES 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKND-HFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKN 118 G+Q+ E LR R Y I++V+ + + + A A G+V K + ++ A+ A N Sbjct: 62 GLQLAEKLRARGYKNAIVMVTMHTEVSIFKRAAAIAKVEGYVLKLDAAEDLENAVYRACN 121 Query: 119 GYCYFPFSLNRFVGSLTSDQQKLDS-LSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 G + SL + + + D QK DS L+K+E V+ I DG ++ IA ++ +S +T+ + Sbjct: 122 GQKFVSPSLAQEMAWMEDDSQKTDSLLTKREEEVLILIADGLGSDAIALRLDLSKRTIDS 181 Query: 178 YKSRLMEKLECKSLMDLYTFA 198 +++ + +KL + ++L +A Sbjct: 182 HRANIRKKLGLTNSVELTRYA 202 >UniRef50_C0GHS5 Two component transcriptional regulator, LuxR family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHS5_9FIRM Length = 219 Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 55/203 (27%), Positives = 103/203 (50%), Gaps = 4/203 (1%) Query: 5 IIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQV 63 I+DDH + ++ L + ++EI+ E G AVQ V +KPD+V++DV + G++G Sbjct: 8 IVDDHEVVRLGLQGLFARYEELEIVGEAASGEEAVQVVPVIKPDVVLLDVRLQGIHGADT 67 Query: 64 LETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYF 123 + ++++S+ + + AGA+ +V K N+I AI+A G + Sbjct: 68 CRLITSAVPGIKVVMLSSFAEPEEVQAAFTAGASAYVLKNITSGNVIKAIKAVMQGESFI 127 Query: 124 PFSLNRFVGSLTSDQQ---KLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKS 180 + V SL ++ ++ LSK+E ++ + +GK N +I ++F+S KTV + S Sbjct: 128 DPEITEQVMSLIRGEKAASQISGLSKREEEILHLVGEGKTNKEIGRELFLSEKTVRNHVS 187 Query: 181 RLMEKLECKSLMDLYTFAQRNKI 203 R+++KL + F R + Sbjct: 188 RILDKLGVSNRSQAAAFMARRSV 210 >UniRef50_Q3Z7M1 DNA-binding response regulator, LuxR family n=7 Tax=Bacteria RepID=Q3Z7M1_DEHE1 Length = 232 Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 55/208 (26%), Positives = 108/208 (51%), Gaps = 8/208 (3%) Query: 4 IIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 ++ DDH + ++ LL + D E++ E ++G AV VE+L+P +++ D+ + G++GI+ Sbjct: 5 VLADDHQIVRHGLKALLEAEADFEVVGEASDGIEAVNLVESLQPGVLVTDLMMGGMSGIE 64 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 V + KR ++I+S + Y AGA +V K ++ ++ A G+ Y Sbjct: 65 VTYQVVKRSPKTAVVILSMYGNEAYVHEALRAGARAYVLKDSTSEELVRSVREAVQGHRY 124 Query: 123 F--PFSLNRFVGSL--TSDQQKLD---SLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 P S + +++ LD +L+ +E V+ + G +IAE++FIS +TV Sbjct: 125 LSSPLSEKAIEAYMEKSAEATSLDPYETLTIREREVLHLVAQGHTCAEIAERLFISPRTV 184 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKI 203 +++ +M KL+ ++ L +A + I Sbjct: 185 EVHRANMMRKLDLRNQTQLLRYALQRGI 212 >UniRef50_Q2RYV0 DNA-binding response regulator, LuxR family n=3 Tax=Rhodothermaceae RepID=Q2RYV0_SALRD Length = 253 Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/205 (23%), Positives = 105/205 (51%), Gaps = 7/205 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++DDHP + AIRN + D+E+ T A +++E ++PD ++D+ + + Sbjct: 9 IRTFLVDDHPAILEAIRNRIDDTLDVEVCGMATSSDEAFRKIEDMEPDTAVVDISLEDAH 68 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ +++ L+ + +++ S ++ Y + AGA+G++ K + ++I AI G Sbjct: 69 GLDLVQNLQSQCPEVQVVVYSMYDEMVYAERAIQAGASGYLMKDQPTEDLIEAIRVVDGG 128 Query: 120 YCYFPFS-----LNRFVGSLTSDQQ-KLDSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 + LN+ +S+ ++ + +E++V + + +G +I +++ ++ K Sbjct: 129 EVFLSREMASQILNKVARGESSEPSFPIEEFTDRELAVFQMLGEGCSIEEIQDRLNLARK 188 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFA 198 TV TY+ R EKL S+ L FA Sbjct: 189 TVETYRRRAKEKLGFDSVSKLLQFA 213 >UniRef50_Q6AMC3 Related to two-component system response regulator (Nar family) n=1 Tax=Desulfotalea psychrophila RepID=Q6AMC3_DESPS Length = 221 Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 53/203 (26%), Positives = 106/203 (52%), Gaps = 8/203 (3%) Query: 4 IIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQR-VETLKPDIVIIDVDIPGVNGIQ 62 +I+DDHP+ + LL + D + + E + +R + KPD+ I+D+ + G NG+ Sbjct: 6 MIVDDHPIFRMGMAELLNQEDDFCVCAVAENIAGARRAIAEHKPDMAIVDITLAGDNGLD 65 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 +++ + + ++++S ++ + + AGA G++ K+E ++I+A+ + G + Sbjct: 66 LVKEITAEKLCSAVLVLSMHDEAVWAERAIRAGAKGYIMKREASESVISALRNIREGRLH 125 Query: 123 -----FPFSLNRFVGSLTSDQ--QKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 L++F + +Q +D L+ +EI V R I G +IAE+M + KT+ Sbjct: 126 VSPNMMSLLLDKFHVNKADNQGAPTVDLLTDREIEVFRLIGSGLPTREIAEQMCLGVKTI 185 Query: 176 STYKSRLMEKLECKSLMDLYTFA 198 TY+ R+ +KL K+ +L A Sbjct: 186 GTYRDRIKQKLCIKTGAELIRRA 208 >UniRef50_A9VYF8 Response regulator receiver n=5 Tax=Methylobacterium RepID=A9VYF8_METEP Length = 236 Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 101/203 (49%), Gaps = 9/203 (4%) Query: 5 IIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQV 63 +IDDHP+ + +R LL + IE++ E ++G A+ V KPD+VI+D+ + G++G+ V Sbjct: 12 LIDDHPIFRSGVRGLLGETAGIEVVGEASDGRHALDLVLRTKPDVVIMDITMTGMSGLAV 71 Query: 64 LETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYF 123 LR+ + I+ ++ D + AGA G+V K+ +++ AIEA G Y Sbjct: 72 ARALREVGSAVHIVFLTVNEDLAFVDEALTAGAQGYVLKRSAGTSLLEAIEAVVLGGQYV 131 Query: 124 -------PFSLNRF-VGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 P +R G + L+ +E V+R I G +++ M IS +V Sbjct: 132 DAEMRAPPAPPDRTEAGPPAPHPGQEGGLTAREREVLRLIALGMTMKEVSLAMSISAASV 191 Query: 176 STYKSRLMEKLECKSLMDLYTFA 198 TYK R +KL +S + FA Sbjct: 192 DTYKIRGCKKLGLRSRASIVRFA 214 >UniRef50_B8FX94 Two component transcriptional regulator, LuxR family n=2 Tax=Desulfitobacterium hafniense RepID=B8FX94_DESHD Length = 212 Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 51/190 (26%), Positives = 97/190 (51%), Gaps = 4/190 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I DDHPL +R +L + I+++ E+ +G A+ TL DI+++D+++PGVN Sbjct: 2 IRVVIADDHPLLREGLRRILEFEEGIQVVCEVGDGQGAINVSRTLDFDILLMDLNMPGVN 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ +R+ + I++++ + G G++ K +I +I +G Sbjct: 62 GLEACRVIRRENETIGILVLTVDDSDEKVFQVLQLGVAGYLLKDVDPKTLIDSIRKVHSG 121 Query: 120 YCYF-PFSLNRFVGSLTSDQQKLDS--LSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 P + +G L Q D+ LS +E+ ++ Y++ G N +I + +FIS KTV Sbjct: 122 QPILSPAVTGKLLGQLVHPTQNRDTCGLSDRELQILTYVVKGSSNREIGQALFISEKTVK 181 Query: 177 TYKSRLMEKL 186 + S + KL Sbjct: 182 NHLSSIFRKL 191 >UniRef50_Q47DK2 Two component transcriptional regulator, LuxR family n=1 Tax=Dechloromonas aromatica RCB RepID=Q47DK2_DECAR Length = 211 Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 58/202 (28%), Positives = 108/202 (53%), Gaps = 11/202 (5%) Query: 4 IIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 I+ DD L A IR ++ +I AE T+G A+ ++ L+PD+V++D+ +PG +GI+ Sbjct: 7 ILADDQLLIRAGIRAIVETLPGFQIEAECTDGYEAISAIQRLQPDVVLLDIAMPGPSGIE 66 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 V T+R+ + I+++S+ + + AG NG++ K + ++ A+E +G + Sbjct: 67 VARTIRQFDPNTKILVLSSVDRPEIIEQALAAGVNGYLLKDFVLAELLQALEMVLHGERF 126 Query: 123 FP---FSLNRFV---GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 ++RF G+ S Q L+ ++ ++R + G+ +IA + IS KTV Sbjct: 127 LSPKIREMSRFSDAEGTSGSGTQ----LTARQTEILRLVASGRTTKEIARDLGISPKTVE 182 Query: 177 TYKSRLMEKLECKSLMDLYTFA 198 ++SRLME++ + L FA Sbjct: 183 FHRSRLMERIGVHDVTGLTRFA 204 >UniRef50_Q39TN7 Two component transcriptional regulator, LuxR family n=1 Tax=Geobacter metallireducens GS-15 RepID=Q39TN7_GEOMG Length = 210 Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 105/204 (51%), Gaps = 4/204 (1%) Query: 4 IIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 ++ DDH + ++ ++ D+ ++ E +G + +++ D+VI+D+ +PG NG+ Sbjct: 6 LVADDHAIFREGLKQVIGTTVDMSVVDEAVDGKELLNKIQANDYDMVILDITMPGRNGLD 65 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 VL ++ + ++++S + Y +GA G+++K N ++ A+ G Y Sbjct: 66 VLTEMKSIKPKLPVLVMSMHPEEQYALRAYKSGAAGYLNKGSASNELLDALHKISMGKKY 125 Query: 123 FPFSLNRFVGSLTSD---QQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 +L + S SD Q L SLS +E VM I GK IA ++ +S KTVSTY+ Sbjct: 126 VSSALAESLVSGLSDHNQQDLLQSLSNREYQVMSMIASGKTVGKIATELSLSVKTVSTYR 185 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 + ++ KL K+ +L F NK+ Sbjct: 186 AHILRKLNMKNNAELTRFVIENKL 209 >UniRef50_Q475M9 Regulatory protein, LuxR:Response regulator receiver n=3 Tax=Cupriavidus RepID=Q475M9_RALEJ Length = 212 Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 56/214 (26%), Positives = 107/214 (50%), Gaps = 22/214 (10%) Query: 2 NAIIIDDHPL-----------AIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVI 50 A+I+D P+ A+ A R LL N + A Q V +P +V+ Sbjct: 8 EALIVDARPVPPGEASWQLAHALGARRTLLADNVRQ----------AQQMVRERQPGLVV 57 Query: 51 IDVDIPGVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNII 110 +++D G GI +++ L R ++++S + AGA+GFV ++ + ++ Sbjct: 58 VELDALGQAGITLIKRLAARHPDVRLLVLSDSDATMAPVQALRAGAHGFVPRQRDLAEMV 117 Query: 111 AAIEAAKNGYCYFP-FSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMF 169 A +GY FP +L+ KL L+ +E++V++Y+ G N I ++ Sbjct: 118 QAARGVMSGYLVFPTHTLDAARKLRLPSAGKLARLTARELTVLQYLARGHSNKTIGARLL 177 Query: 170 ISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 IS+KTVST+K+ +M KL S++++ +A+++++ Sbjct: 178 ISSKTVSTHKTNIMCKLNVGSVVEMVDYARQHRL 211 >UniRef50_C5UZV9 Two component transcriptional regulator, LuxR family n=1 Tax=Gallionella ferruginea ES-2 RepID=C5UZV9_9PROT Length = 213 Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 103/187 (55%), Gaps = 4/187 (2%) Query: 4 IIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +++DDH L ++ LL D++I E + G A+ + D++++D+++P +GI+ Sbjct: 5 LVVDDHALIRKGLKQLLEDTPDLKITGEASSGTEAISMLRAAPFDLMLLDINLPDKHGIE 64 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 VL+ + Q III+S + YG AGA G+++K+ + +I AI +G Y Sbjct: 65 VLKQFKSEQPQLKIIILSMYPEDQYGVRALKAGAMGYINKQSASDVLIKAIRHVLSGKKY 124 Query: 123 FPFSL-NRFVGSLTSDQQKL--DSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 L + + +L + Q+L +LS +E + + GK ++I++ M +S KTVS Y+ Sbjct: 125 ISEILAEQLLNNLIGESQELMHQNLSNREYQTLCLMASGKTLSEISQIMALSPKTVSVYR 184 Query: 180 SRLMEKL 186 SR++ K+ Sbjct: 185 SRMLAKM 191 >UniRef50_A5FAW2 Two component transcriptional regulator, LuxR family n=2 Tax=Flavobacterium RepID=A5FAW2_FLAJ1 Length = 219 Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 63/207 (30%), Positives = 109/207 (52%), Gaps = 10/207 (4%) Query: 7 DDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLE 65 DDH + I + NLL ++ EI+ G + V + DI+++D+ +P +GI+VL+ Sbjct: 10 DDHQVLIDGLTNLLQTVSNFEIVGSSLNGVTVYDDVIQDQADILVLDISMPQKDGIEVLK 69 Query: 66 TLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYFPF 125 ++ +II+S+ +D K GA G+++KK N+I AIEA G YF Sbjct: 70 EFNQKGLPCKVIILSSYDDLKIIKEVMKLGAKGYLTKKCAGENMIEAIEAVYEGQEYFSD 129 Query: 126 SLNRFVGSLTS-DQQKLDS--------LSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 ++ + S+ S + KL+ LS +EI ++ I +I+EK+FIS TV Sbjct: 130 AVREKIFSMFSQNNPKLNKNVYIENPILSPREIEIVTLICLEYSGKEISEKLFISVNTVE 189 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKI 203 T++ +M+KL K+ + L +A +N + Sbjct: 190 THRKNIMKKLNIKNTIGLVKYALKNNL 216 >UniRef50_D1Y4N4 Two component transcriptional regulator, LuxR family n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y4N4_9BACT Length = 215 Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 103/201 (51%), Gaps = 4/201 (1%) Query: 4 IIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 ++ DDHPL A + L+ + + + +L E ++G A + +E L+PD+ ++D+ +P ++GI Sbjct: 5 VLADDHPLTRAGLAALINEEEGLNLLGEASDGKQAWEMIEKLRPDVALLDIRMPEMDGIT 64 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 V ++ + +I+++A N Y AGA GF+ K + + A+++ G Y Sbjct: 65 VARKVKDAKLPTKVIMLTAYNAQPYIVAALSAGARGFIVKTSAVMELTQALQSVIGGGIY 124 Query: 123 FPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKSRL 182 ++ S+ S +L+ LS +E V+ G ++A K+FI+ +TV + S + Sbjct: 125 LDSAI---ANSVDSASNELEQLSPREREVLLLSSQGFPVKEVAAKLFITERTVQAHLSSV 181 Query: 183 MEKLECKSLMDLYTFAQRNKI 203 K K+ + A +N I Sbjct: 182 YAKFGAKNKTEALIIALKNGI 202 >UniRef50_A6WBE1 Two component transcriptional regulator, LuxR family n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6WBE1_KINRD Length = 215 Score = 87.0 bits (214), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 108/211 (51%), Gaps = 15/211 (7%) Query: 4 IIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +I+DD + +R ++ D+++ A +G A++ +E+ D+V++D+ +PG++G++ Sbjct: 1 MIVDDQEMIREGLRTIIGAHPDLQVAAVAGDGLEALKLLESTAVDVVLMDIRMPGIDGVE 60 Query: 63 VLETLRKRQYSG---IIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAI-EAAKN 118 +R + S I ++ + ND + AGA+GF+SK G + A I + A Sbjct: 61 ATRRIRATRSSAQVRICVLTTFDNDENVLRAL-KAGADGFLSKGAGPTELTAGILDIAGG 119 Query: 119 GYCYFPFSLNRFV------GSLTSDQQKLD---SLSKQEISVMRYILDGKDNNDIAEKMF 169 G P +L+ V S+ D Q L +L+ +E V+ I+ G DN IAE MF Sbjct: 120 GSALSPTALSAVVTHVAEDNSVPDDPQALKLFAALTAREREVVEAIVTGLDNQQIAEAMF 179 Query: 170 ISNKTVSTYKSRLMEKLECKSLMDLYTFAQR 200 +S TV T+ +R M K+ + L + A R Sbjct: 180 VSPFTVKTHANRAMSKVGARDRAQLVSMAVR 210 >UniRef50_Q67QY5 Two-component response regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67QY5_SYMTH Length = 218 Score = 87.0 bits (214), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 58/216 (26%), Positives = 111/216 (51%), Gaps = 17/216 (7%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 M +I+DDH + + ++L D+E++ E + G A++ V LKPD+V++D+++P ++G Sbjct: 1 MKVLIVDDHLMLRKGVLSVLSNTDLEVIGEASNGQEALELVPKLKPDLVLMDINMPVLDG 60 Query: 61 IQVLETLRKRQYSG---IIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAK 117 ++ L K+ Y +I+ VS + + AGA+G++ K G +++++ AA Sbjct: 61 VEATRKL-KQMYPDLKVVILTVSEIDKDLF--EAIKAGADGYLLKNLGPEELVSSLRAAI 117 Query: 118 NGYCYFPFS-------LNRFVGSL--TSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKM 168 +G P S L F T+ +Q LS +EI V+R G +IA K+ Sbjct: 118 SGEA--PISSVMAAKMLKEFRQPRANTTGKQPGQQLSPREIEVLRLASTGLTYKEIAAKL 175 Query: 169 FISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKIG 204 +++ TV + ++EKL ++ + +A R + Sbjct: 176 YVAESTVKNHMRHILEKLHLRNRSEAVGYAIRTGLA 211 >UniRef50_Q1LE49 Two component transcriptional regulator, LuxR family n=5 Tax=Burkholderiaceae RepID=Q1LE49_RALME Length = 264 Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 55/205 (26%), Positives = 103/205 (50%), Gaps = 8/205 (3%) Query: 2 NAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 + +I++DH L A +R++L + + E +G A Q +L PD++++D+ +PG+NG Sbjct: 6 SVLIVEDHNLLRAGLRSMLSAQMGYHVAGEARDGREACQLAISLCPDLILMDLSLPGMNG 65 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 I + +++R II +S + Y + AG +G+V K ++++ A+ G Sbjct: 66 IDAIAAIKRRSPGIRIIALSVHQNDEYVREALRAGVDGYVLKDTSFDDLVTAMRVVLLGK 125 Query: 121 CYF-PFSLNRFVGSLTSDQQ------KLDSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 + P V S S + D L+ +E SV++ + +G+ N + M +S K Sbjct: 126 KHLSPELYGNLVESYVSGHEMSTAKTGWDLLTARERSVLKLVAEGRSNRQVGIYMNLSPK 185 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFA 198 T+ Y++ LM KL +L +L A Sbjct: 186 TIEKYRASLMRKLGITNLTELVLIA 210 >UniRef50_B2A6W2 Two component transcriptional regulator, LuxR family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A6W2_NATTJ Length = 215 Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 60/213 (28%), Positives = 113/213 (53%), Gaps = 14/213 (6%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLK---PDIVIIDVDIP 56 ++ +++DDH + + LL ++D+E+ ++ G+A + ++T K PD+V++D+ +P Sbjct: 3 ISVLVVDDHAVLGKGLSMLLNSQDDMEVCGQV---GTAKEALDTCKEKCPDVVLLDLSLP 59 Query: 57 GVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAA 116 G ++++ L K S ++ ++ D Y K +AG +G++ KK + +I+AI + Sbjct: 60 DKQGHEIIKEL-KESCSARVLALTMHEDEAYFKRVVEAGGDGYILKKAADDELISAIRSV 118 Query: 117 KNGYCYFPFSLNRFV------GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFI 170 G + + + S +K LS +E V++ I G N +IAEK++I Sbjct: 119 YQGEVIVDKTFTKLLIDYYRNPDKQSGTEKNYDLSDREKEVLQLIALGYTNKEIAEKLYI 178 Query: 171 SNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 S KTV T+ +R+ EKL +L +A RN I Sbjct: 179 SIKTVETHIARIKEKLGLNRRSELVRYAMRNNI 211 >UniRef50_B9TGG7 Response regulator uvrY, putative n=1 Tax=Ricinus communis RepID=B9TGG7_RICCO Length = 210 Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 99/191 (51%), Gaps = 4/191 (2%) Query: 4 IIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 ++ DDHPL + +L + D+ + + G + R+ D++++D ++PG+ G + Sbjct: 5 LVADDHPLIRIGLSHLCALAGDMAVTFQAATSGEVLDRIRKQDFDLLVLDTEMPGITGAE 64 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 ++ + I+ S N+ + AGA G++SK ++ AI +G + Sbjct: 65 LIARVHAHVPRLPILAFSVHNEAQVVRRILYAGAAGYLSKDCDPETLLFAIRKIASGGRF 124 Query: 123 FPFSL-NRFVGSLTSDQQKL--DSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 L R D+ K + LS +E+ ++R ++ GK ND+A ++ ISNKTVST+K Sbjct: 125 IDLKLAERIAFHKKKDESKRPHEQLSNRELCILRLLVAGKTVNDVASQLVISNKTVSTHK 184 Query: 180 SRLMEKLECKS 190 +R+MEK+ +S Sbjct: 185 ARMMEKMGFQS 195 >UniRef50_B5D3J6 Putative uncharacterized protein n=1 Tax=Bacteroides plebeius DSM 17135 RepID=B5D3J6_9BACE Length = 215 Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 49/192 (25%), Positives = 103/192 (53%), Gaps = 1/192 (0%) Query: 4 IIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +++DDH L + I++++ + +IE + + G A+ + DI ++DV++P NG + Sbjct: 9 LLVDDHTLILQGIKHVVSQMPEIEKVYTASSGAEAMLLIAMQPFDIYLLDVELPDTNGFE 68 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 ++ET+ ++ I+I + + + K A +G + K +N + AI+ G Y Sbjct: 69 LIETILQKHPEARILINTMHEEIWILKRLTKASISGAILKSADINELTLAIQTILKGGQY 128 Query: 123 FPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKSRL 182 + + +++Q + L+ +E+ V++ I G + +IAE + +SN T+ T++ L Sbjct: 129 LCKRFKSILNRMQTEEQIKEQLTLREMEVLQAIAKGFNTREIAELLHVSNNTIETHRKSL 188 Query: 183 MEKLECKSLMDL 194 M KLE ++ +DL Sbjct: 189 MSKLEARNAVDL 200 >UniRef50_B9XQH4 Two component transcriptional regulator, LuxR family n=2 Tax=Verrucomicrobia RepID=B9XQH4_9BACT Length = 223 Score = 86.7 bits (213), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 52/202 (25%), Positives = 107/202 (52%), Gaps = 7/202 (3%) Query: 4 IIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +I+DDHPL ++ ++ ++ + + E + A++ + TLKP++V++D+ + +GI Sbjct: 12 LIVDDHPLFREGLQQMIDRDPSLVVCGEAADAVQAMEAINTLKPNLVLVDISLGNASGID 71 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 +++ ++ + +++VS ++ Y + AGA G+V K E + AI G Y Sbjct: 72 LIKNIKNQHDDLPVLVVSMHDESLYAERALRAGAMGYVMKHEPAKTVRGAIYKVLGGDIY 131 Query: 123 FPFS-----LNRFVGSLTSDQ-QKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 L +F+ T + L+ LS +E+ V R + GK IAE+M ++ T++ Sbjct: 132 LSERMASSMLVKFMKGKTDEPLSPLEILSDRELEVFRMLGQGKGTRQIAEEMNLTIATIN 191 Query: 177 TYKSRLMEKLECKSLMDLYTFA 198 ++++R+ +KL KS ++ A Sbjct: 192 SFRARIKDKLHLKSSTEVMLHA 213 >UniRef50_C4DI56 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DI56_9ACTO Length = 235 Score = 86.7 bits (213), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 100/185 (54%), Gaps = 5/185 (2%) Query: 4 IIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 ++ DDHP+ ++ L I+ D+ ++AE +G A+ + +PD+V++D+++PG +G + Sbjct: 8 LVADDHPIVRQGLKTFLDIQPDLSVVAEARDGDEALALIAAHEPDVVLLDLNMPGSDGAK 67 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 VL L + +I++++ + AGA GF+ K +++ AI + +G Sbjct: 68 VLTRLAASDHRAKVIVLTSVTEAVRVTEAVAAGAAGFLYKDIDPDSLAQAIRSVADGQVI 127 Query: 123 FPFSLNRFVGSLTSDQQ-KLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKSR 181 F V ++T+ + +L+ +E V+ + G+ N +IA+++ ++ KTV T+ S Sbjct: 128 F---AREAVTAMTAPAPGPVAALTAREREVLALVAAGRSNREIAKQLSVAEKTVKTHLSS 184 Query: 182 LMEKL 186 L KL Sbjct: 185 LFRKL 189 >UniRef50_C1I7X4 Two-component system response regulator n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I7X4_9CLOT Length = 226 Score = 86.3 bits (212), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 55/212 (25%), Positives = 108/212 (50%), Gaps = 9/212 (4%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + I++DDH L + ++ + D+ I + G + ++ PD++++D+++PG N Sbjct: 6 IRTIVVDDHALIREGLNRIISFEEDLIICGQFRSGEELLNNMKNYNPDVILLDINMPGKN 65 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ L+TL+ +++++ +ND D GA+ ++ K+ + I+ AI G Sbjct: 66 GIETLKTLKILYPDIKVVMLTVENDKKTIMESIDIGADAYILKESAGSEIVNAIRNVYLG 125 Query: 120 YCYFPFSLNRF--------VGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFIS 171 Y SL + V + + L L+ +E++++ I G N +IAEK+F+S Sbjct: 126 EKYIDKSLIKAIFLDIKSDVACKNKEIESLKLLTNRELNILYEISKGLKNKEIAEKLFLS 185 Query: 172 NKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 KTV Y + + +K+E + + +A RN I Sbjct: 186 EKTVKNYITSIFKKIEVEDRVQATIYAIRNNI 217 >UniRef50_D1BCA8 Two component transcriptional regulator, LuxR family n=18 Tax=Bacteria RepID=D1BCA8_SANKS Length = 234 Score = 86.3 bits (212), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 94/188 (50%), Gaps = 5/188 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDHP+ A I +L +++DIE++ E +G AV TL PD+VI D+ +P ++ Sbjct: 29 VRVVVADDHPVVRAGIVGMLGVESDIEVVGEAEDGRQAVDLARTLSPDVVITDLRMPVLD 88 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAI-EAAKN 118 G+ + + +++++ +AGA G++ K ++A I EAA+ Sbjct: 89 GVGATREIVALPGTVRVVVLTTYETDGEILRAVEAGATGYLLKDTPRAELVAGIREAARG 148 Query: 119 GYCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTY 178 P R V + S + D L+ +E+ V+R + G N + ++FIS TV T+ Sbjct: 149 QTVLTPSVATRLVSQVGS---RADRLTPREVEVLRAVARGLSNAAVGHELFISETTVKTH 205 Query: 179 KSRLMEKL 186 R KL Sbjct: 206 LIRAFGKL 213 >UniRef50_C6VXG6 Two component transcriptional regulator, LuxR family n=2 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VXG6_DYAFD Length = 220 Score = 86.3 bits (212), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 59/213 (27%), Positives = 107/213 (50%), Gaps = 11/213 (5%) Query: 2 NAIIIDDHPLAIAAIRNLLIKNDIE--ILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 ++++DH + +R LLI++ + + E ++ +++ D+VI+D+ IPG Sbjct: 3 TVLLVEDHSIVRMGVR-LLIEDFLPSVTVVEAATFSETLKHLQSRFFDLVILDIKIPGGE 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 ++ +R Q I++ S++++ Y H AGANG++ K + AI + G Sbjct: 62 AFNMIGKIRDIQNKVKILVFSSQDEELYAIHYVKAGANGYLPKDTSNEELEKAITSVLAG 121 Query: 120 YCYFPFSL-----NRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 Y + N + S + L+ LS +E+ +M +L GK DIA + I T Sbjct: 122 GTYISNVIQDQLVNNTLLERESKESPLEILSNRELEIMDMLLTGKWTKDIALDLNIKEST 181 Query: 175 VSTYKSRLMEKLECKSLMDLY---TFAQRNKIG 204 VSTYK+R+ EKLE ++++L+ +R K G Sbjct: 182 VSTYKARIFEKLEVTNILELFKKVEIYKRRKTG 214 >UniRef50_C1XKQ4 Two component transcriptional regulator, LuxR family n=1 Tax=Meiothermus ruber DSM 1279 RepID=C1XKQ4_MEIRU Length = 194 Score = 86.3 bits (212), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 95/189 (50%), Gaps = 12/189 (6%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 M +I DDHPL +R L + ++AE +G AV+ L PD V++DV +P ++G Sbjct: 1 MRLLIADDHPLFRMGLRAALEREGFAVVAEAGDGQEAVKLGLELLPDGVLLDVRMPQMDG 60 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 I LR+++Y+G+I +++ N+ + A AGA+ + SK+ EA Sbjct: 61 ITATRMLREQRYNGLIALLTTFNEPVLVQQAAYAGADAYWSKE-------LPPEALAERL 113 Query: 121 CYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKS 180 L + + +L L+ +E V++++ G +IA +M IS +TV + Sbjct: 114 RRLGLGLEPRLRA-----PELPRLTAREQEVLQWMAQGLSTKEIARQMHISPETVKDHLL 168 Query: 181 RLMEKLECK 189 RL EKLE + Sbjct: 169 RLYEKLEAR 177 >UniRef50_C9M8B3 DNA-binding response regulator, LuxR family n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M8B3_9BACT Length = 212 Score = 86.3 bits (212), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 50/185 (27%), Positives = 100/185 (54%), Gaps = 6/185 (3%) Query: 4 IIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 I+ DDHPL ++ L + + + ++ E +G A + +E LKPD+ ++D+ +PG +GI Sbjct: 7 ILADDHPLTRQGLKAYLEREENVALVGEAADGDEAWKLIEELKPDVALLDIRMPGADGIT 66 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 + +++ + I++++ + Y AGA GFV K ++ AI+ G + Sbjct: 67 LARRIKENKLPVAAIMLTSYDSQQYVLASLKAGAKGFVLKTTSAGALMKAIQTVATGSLF 126 Query: 123 FPFSLNRFVGSLTSDQQKL-DSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKSR 181 L+ V S+ Q++L ++LS +E V+ G + ++A +++IS +TV T+ + Sbjct: 127 ----LDSEVASVVGAQEELTEALSPREREVLLCAARGLSSKEVAAQLYISERTVQTHLAS 182 Query: 182 LMEKL 186 + +KL Sbjct: 183 VYDKL 187 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_C0QFU8 TRAP-type C4-dicarboxylate transporter, periplas... 279 3e-74 UniRef50_B7GL14 DNA-binding response regulator, NarL family (REC... 270 1e-71 UniRef50_D2BDI1 Response regulator receiver protein n=8 Tax=Acti... 269 4e-71 UniRef50_P0ACZ6 Positive transcription regulator evgA n=68 Tax=E... 268 7e-71 UniRef50_C8WSR5 Two component transcriptional regulator, LuxR fa... 265 6e-70 UniRef50_Q2RJU9 Two component transcriptional regulator, LuxR fa... 265 7e-70 UniRef50_B4VFW8 Two-component system response regulator n=2 Tax=... 265 9e-70 UniRef50_Q1J0X7 Two component transcriptional regulator, LuxR fa... 265 9e-70 UniRef50_A0LVS2 Two component transcriptional regulator, LuxR fa... 264 1e-69 UniRef50_Q1LEP5 Two component transcriptional regulator, LuxR fa... 263 2e-69 UniRef50_Q5HLK6 Oxygen regulatory protein nreC n=71 Tax=Firmicut... 263 3e-69 UniRef50_C7RBI1 Two component transcriptional regulator, LuxR fa... 263 3e-69 UniRef50_A1HU08 Two component transcriptional regulator, LuxR fa... 263 4e-69 UniRef50_B1Y743 Two component transcriptional regulator, LuxR fa... 263 4e-69 UniRef50_Q01NJ8 Two component transcriptional regulator, LuxR fa... 262 5e-69 UniRef50_A8MF72 Two component transcriptional regulator, LuxR fa... 262 6e-69 UniRef50_D1AAU8 Two component transcriptional regulator, LuxR fa... 262 6e-69 UniRef50_Q1GIA7 Two component transcriptional regulator, LuxR fa... 261 9e-69 UniRef50_A5F1Q5 Transcriptional regulator, LuxR family n=54 Tax=... 260 1e-68 UniRef50_B9L2G4 Transcriptional regulatory protein degU n=2 Tax=... 260 2e-68 UniRef50_A0RDP4 DNA-binding response regulator n=75 Tax=Bacillac... 260 2e-68 UniRef50_B8FFJ9 Two component transcriptional regulator, LuxR fa... 260 2e-68 UniRef50_B9L0H3 Transcriptional regulatory protein degU n=1 Tax=... 260 2e-68 UniRef50_B8FDP3 Two component transcriptional regulator, LuxR fa... 260 2e-68 UniRef50_A6GFX0 Two component transcriptional regulator, LuxR fa... 260 3e-68 UniRef50_B8D0J2 Two component transcriptional regulator, LuxR fa... 259 3e-68 UniRef50_Q01NC6 Two component transcriptional regulator, LuxR fa... 259 4e-68 UniRef50_C1TQ52 Response regulator containing a CheY-like receiv... 258 6e-68 UniRef50_C0QFI8 DNA-binding response regulator (LuxR-family prot... 258 7e-68 UniRef50_A8VTE0 Response regulator receiver protein n=1 Tax=Baci... 258 7e-68 UniRef50_Q2RMH6 Two component transcriptional regulator, LuxR fa... 258 1e-67 UniRef50_A0R9S0 DNA-binding response regulator n=37 Tax=Bacillus... 258 1e-67 UniRef50_O07528 Uncharacterized transcriptional regulatory prote... 258 1e-67 UniRef50_C6BTX3 Two component transcriptional regulator, LuxR fa... 257 1e-67 UniRef50_B8G137 Two component transcriptional regulator, LuxR fa... 256 3e-67 UniRef50_B1ZVM0 Two component transcriptional regulator, LuxR fa... 256 3e-67 UniRef50_Q485W6 DNA-binding response regulator n=3 Tax=Alteromon... 255 4e-67 UniRef50_C1A9U5 NarL family two-component response regulator n=1... 255 5e-67 UniRef50_B8GAC9 Two component transcriptional regulator, LuxR fa... 255 5e-67 UniRef50_C6E2Z1 Two component transcriptional regulator, LuxR fa... 255 5e-67 UniRef50_C9LUT0 DNA-binding response regulator UhpA n=1 Tax=Sele... 255 6e-67 UniRef50_A0L9F1 Two component transcriptional regulator, LuxR fa... 255 6e-67 UniRef50_A5G586 Two component transcriptional regulator, LuxR fa... 255 7e-67 UniRef50_Q3Z7M1 DNA-binding response regulator, LuxR family n=7 ... 255 7e-67 UniRef50_Q11VH7 Response regulator n=1 Tax=Cytophaga hutchinsoni... 255 9e-67 UniRef50_B9XL75 Two component transcriptional regulator, LuxR fa... 255 9e-67 UniRef50_A9B5L0 Two component transcriptional regulator, LuxR fa... 254 2e-66 UniRef50_A7HA46 Two component transcriptional regulator, LuxR fa... 254 2e-66 UniRef50_Q67QY5 Two-component response regulator n=1 Tax=Symbiob... 254 2e-66 UniRef50_Q1H354 Two component transcriptional regulator, LuxR fa... 253 2e-66 UniRef50_B1KE04 Two component transcriptional regulator, LuxR fa... 253 2e-66 UniRef50_B9L1R6 Response regulator uvrY n=1 Tax=Thermomicrobium ... 253 3e-66 UniRef50_D0LYS4 Two component transcriptional regulator, LuxR fa... 253 4e-66 UniRef50_Q313W8 Two component transcriptional regulator, LuxR fa... 252 4e-66 UniRef50_C4ZNU7 Two component transcriptional regulator, LuxR fa... 252 5e-66 UniRef50_B1M5J4 Two component transcriptional regulator, LuxR fa... 252 6e-66 UniRef50_B0MVU6 Putative uncharacterized protein n=1 Tax=Alistip... 252 8e-66 UniRef50_B2A6W2 Two component transcriptional regulator, LuxR fa... 251 1e-65 UniRef50_D1Y661 DNA-binding response regulator, LuxR family n=1 ... 251 1e-65 UniRef50_B4D6Y1 Two component transcriptional regulator, LuxR fa... 251 1e-65 UniRef50_A1ASJ5 Two component transcriptional regulator, LuxR fa... 251 1e-65 UniRef50_Q15T22 Two component transcriptional regulator, LuxR fa... 251 1e-65 UniRef50_C6J7D2 Response regulator n=1 Tax=Paenibacillus sp. ora... 251 1e-65 UniRef50_Q51373 Response regulator gacA n=50 Tax=Gammaproteobact... 251 1e-65 UniRef50_C8WS10 Two component transcriptional regulator, LuxR fa... 250 2e-65 UniRef50_Q04VJ6 Receiver component of a two-component response r... 250 2e-65 UniRef50_C0N6H7 Response regulator receiver domain protein n=1 T... 250 2e-65 UniRef50_C1F9F6 Two-component response regulator n=2 Tax=Bacteri... 250 2e-65 UniRef50_C6XAP6 Two component transcriptional regulator, LuxR fa... 250 2e-65 UniRef50_C7QHJ1 Two component transcriptional regulator, LuxR fa... 250 2e-65 UniRef50_Q3JFS6 DNA-binding response regulator, LuxR family n=92... 250 3e-65 UniRef50_A1WBJ7 Two component transcriptional regulator, LuxR fa... 250 3e-65 UniRef50_C2C4B6 Transcriptional regulator n=1 Tax=Listeria grayi... 249 3e-65 UniRef50_Q1IXN1 Two component transcriptional regulator, LuxR fa... 249 3e-65 UniRef50_C4ZEG3 Two-component response regulator (Extracellular ... 249 4e-65 UniRef50_Q024Y7 Two component transcriptional regulator, LuxR fa... 249 4e-65 UniRef50_Q5ZS73 Response regulator GacA n=10 Tax=Gammaproteobact... 249 5e-65 UniRef50_P54662 Transcriptional regulatory protein degU n=24 Tax... 249 5e-65 UniRef50_B9XC41 Two component transcriptional regulator, LuxR fa... 249 5e-65 UniRef50_Q1GZT3 Two component transcriptional regulator, LuxR fa... 249 5e-65 UniRef50_B9XAQ5 Two component transcriptional regulator, LuxR fa... 249 5e-65 UniRef50_Q1AVR6 Two component transcriptional regulator, LuxR fa... 249 5e-65 UniRef50_A4VZN8 Response regulator containing a CheY-like receiv... 248 6e-65 UniRef50_UPI0001C314AF two component transcriptional regulator, ... 248 6e-65 UniRef50_D1C1C8 Two component transcriptional regulator, LuxR fa... 248 6e-65 UniRef50_C5T9P3 Two component transcriptional regulator, LuxR fa... 248 7e-65 UniRef50_Q2W7M4 Response regulator n=3 Tax=Magnetospirillum RepI... 248 9e-65 UniRef50_A1SKW0 Two component transcriptional regulator, LuxR fa... 248 1e-64 UniRef50_Q46VQ7 Regulatory protein, LuxR:Response regulator rece... 248 1e-64 UniRef50_B1Y1Z3 Two component transcriptional regulator, LuxR fa... 248 1e-64 UniRef50_UPI0001B502C9 two component LuxR family transcriptional... 248 1e-64 UniRef50_B9QSJ5 Response regulator receiver domain protein n=1 T... 247 2e-64 UniRef50_C7RMN3 Two component transcriptional regulator, LuxR fa... 247 2e-64 UniRef50_A1K960 Probable transcriptional regulator, LuxR family ... 247 2e-64 UniRef50_O32197 Transcriptional regulatory protein liaR n=142 Ta... 247 2e-64 UniRef50_B5YIR2 Response regulator UvrY n=1 Tax=Thermodesulfovib... 246 3e-64 UniRef50_D1C9Z8 Two component transcriptional regulator, LuxR fa... 246 3e-64 UniRef50_A5WFD3 Two component transcriptional regulator, LuxR fa... 246 3e-64 UniRef50_Q13QW9 Two component transcriptional regulator, LuxR fa... 246 3e-64 UniRef50_Q98DH9 Two-component system response regulator n=1 Tax=... 246 3e-64 UniRef50_Q3Z8L1 DNA-binding response regulator, LuxR family n=6 ... 246 4e-64 UniRef50_Q5NY27 DNA-binding response regulator, LuxR family n=1 ... 245 5e-64 UniRef50_Q1ASU8 Two component transcriptional regulator, LuxR fa... 245 5e-64 UniRef50_B1ZY58 Two component transcriptional regulator, LuxR fa... 245 6e-64 UniRef50_A1ZYF0 DNA-binding response regulator, LuxR family n=1 ... 245 6e-64 UniRef50_P55184 Uncharacterized transcriptional regulatory prote... 245 6e-64 UniRef50_Q67MG8 Two-component response regulator n=1 Tax=Symbiob... 245 7e-64 UniRef50_C0Q9H4 Two component transcriptional regulator (LuxR fa... 245 7e-64 UniRef50_B2A8K6 Two component transcriptional regulator, LuxR fa... 245 8e-64 UniRef50_B8GSX5 Response regulator receiver protein n=2 Tax=Ecto... 245 8e-64 UniRef50_A1SGL7 Response regulator receiver n=1 Tax=Nocardioides... 245 8e-64 UniRef50_C6E3E1 Two component transcriptional regulator, LuxR fa... 245 9e-64 UniRef50_Q09C30 Two-component system regulatory protein n=3 Tax=... 244 1e-63 UniRef50_B8CN77 Nitrate/nitrite DNA-binding response regulator, ... 244 1e-63 UniRef50_C0DXM6 Putative uncharacterized protein n=1 Tax=Eikenel... 244 1e-63 UniRef50_C0ZDE8 Two-component response regulator n=7 Tax=Bacilla... 244 2e-63 UniRef50_A9AZR3 Two component transcriptional regulator, LuxR fa... 244 2e-63 UniRef50_B8CZJ8 Two component transcriptional regulator, LuxR fa... 244 2e-63 UniRef50_C4V1Z2 Transcriptional regulator n=1 Tax=Selenomonas fl... 243 2e-63 UniRef50_C4DI56 Response regulator containing a CheY-like receiv... 243 2e-63 UniRef50_B4D2X8 Two component transcriptional regulator, LuxR fa... 243 2e-63 UniRef50_B2JSN3 Two component transcriptional regulator, LuxR fa... 243 2e-63 UniRef50_Q2BNZ3 Transcriptional regulator, LuxR family protein n... 243 3e-63 UniRef50_Q9RU37 DNA-binding response regulator n=3 Tax=Deinococc... 243 3e-63 UniRef50_C6D0G6 Two component transcriptional regulator, LuxR fa... 243 3e-63 UniRef50_C1A5E6 NarL family two-component response regulator n=1... 243 4e-63 UniRef50_B6A2W0 Two component transcriptional regulator, LuxR fa... 243 4e-63 UniRef50_B3DW63 DNA-binding response regulator, NarL family (REC... 243 4e-63 UniRef50_C4V5Y3 Response regulator n=3 Tax=Selenomonas RepID=C4V... 242 4e-63 UniRef50_C7Q6M6 Two component transcriptional regulator, LuxR fa... 242 5e-63 UniRef50_C0GJ72 Two component transcriptional regulator, LuxR fa... 242 5e-63 UniRef50_Q4KCH2 DNA-binding response regulator, LuxR family n=1 ... 242 6e-63 UniRef50_D1CI66 Two component transcriptional regulator, LuxR fa... 242 8e-63 UniRef50_Q52376 Response regulator gacA n=286 Tax=Gammaproteobac... 242 8e-63 UniRef50_Q11YW8 Two component transcriptional regulator, LuxR fa... 241 9e-63 UniRef50_Q60AR8 DNA binding response regulator, LuxR family n=1 ... 241 9e-63 UniRef50_Q39C19 Two component transcriptional regulator, LuxR fa... 241 1e-62 UniRef50_A4XCA4 Response regulator receiver n=3 Tax=Actinomyceta... 241 1e-62 UniRef50_A1VT42 Two component transcriptional regulator, LuxR fa... 241 1e-62 UniRef50_C3BET8 Putative uncharacterized protein n=15 Tax=Bacill... 241 1e-62 UniRef50_C5VAN3 Two component transcriptional regulator, LuxR fa... 240 2e-62 UniRef50_A2SLK8 Two component transcriptional regulator, LuxR fa... 240 2e-62 UniRef50_C4DCK3 Response regulator containing a CheY-like receiv... 240 2e-62 UniRef50_A1WT06 Two component transcriptional regulator, LuxR fa... 240 2e-62 UniRef50_C0N7Q7 Sigma-70, region 4 family n=1 Tax=Methylophaga t... 240 2e-62 UniRef50_A5D0L7 Response regulator n=1 Tax=Pelotomaculum thermop... 240 2e-62 UniRef50_C9M8B3 DNA-binding response regulator, LuxR family n=1 ... 240 2e-62 UniRef50_C4L5Q6 Two component transcriptional regulator, LuxR fa... 240 2e-62 UniRef50_B6JD38 Two component transcriptional regulator, LuxR fa... 240 2e-62 UniRef50_B8FX94 Two component transcriptional regulator, LuxR fa... 240 3e-62 UniRef50_A6BYP5 Response regulator receiver domain protein n=1 T... 240 3e-62 UniRef50_C6CZA5 Two component transcriptional regulator, LuxR fa... 240 3e-62 UniRef50_Q39TN7 Two component transcriptional regulator, LuxR fa... 240 3e-62 UniRef50_C1TL94 Response regulator containing a CheY-like receiv... 240 3e-62 UniRef50_B3RA82 Response regulator protein; Response regulator r... 240 3e-62 UniRef50_P0A4H3 Virulence factors putative positive transcriptio... 240 3e-62 UniRef50_B2KBW2 Two component transcriptional regulator, LuxR fa... 239 3e-62 UniRef50_C9QDP7 DNA-binding response regulator LuxR family n=2 T... 239 3e-62 UniRef50_C7I0E4 Two component transcriptional regulator, LuxR fa... 239 3e-62 UniRef50_A0NNP3 Response regulator containing a CheY-like receiv... 239 4e-62 UniRef50_Q89IF1 Two-component response regulator n=2 Tax=Bradyrh... 239 4e-62 UniRef50_B7AAT6 Two component transcriptional regulator, LuxR fa... 239 5e-62 UniRef50_C5V5K1 Two component transcriptional regulator, LuxR fa... 239 5e-62 UniRef50_D2QGZ7 Two component transcriptional regulator, LuxR fa... 239 5e-62 UniRef50_UPI00016C48EF two-component response regulator n=1 Tax=... 239 5e-62 UniRef50_Q1QVM5 Two component transcriptional regulator, LuxR fa... 239 5e-62 UniRef50_UPI00018507A5 two component LuxR family transcriptional... 239 5e-62 UniRef50_Q1LE49 Two component transcriptional regulator, LuxR fa... 239 5e-62 UniRef50_A3Y699 Putative two component system response regulator... 238 6e-62 UniRef50_Q3K943 Putative LuxR family response regulator n=4 Tax=... 238 6e-62 UniRef50_A4TJY3 Two-component response regulator n=27 Tax=Yersin... 238 6e-62 UniRef50_Q027R2 Two component transcriptional regulator, LuxR fa... 238 7e-62 UniRef50_C9P7J6 Two component transcriptional regulator LuxR fam... 238 7e-62 UniRef50_C1TL62 Response regulator containing a CheY-like receiv... 238 7e-62 UniRef50_A1ZFU2 Transcriptional regulator, LuxR family n=1 Tax=M... 238 8e-62 UniRef50_D2BGT0 DNA-binding response regulator, LuxR family n=5 ... 238 8e-62 UniRef50_C4KAM8 Two component transcriptional regulator, LuxR fa... 238 1e-61 UniRef50_UPI0001AEC81D LuxR family transcriptional regulator n=1... 238 1e-61 UniRef50_B8GUD1 Two component transcriptional regulator, LuxR fa... 238 1e-61 UniRef50_C6C961 Two component transcriptional regulator, LuxR fa... 237 1e-61 UniRef50_B3PFS2 GacA n=1 Tax=Cellvibrio japonicus Ueda107 RepID=... 237 1e-61 UniRef50_Q021D5 Two component transcriptional regulator, LuxR fa... 237 2e-61 UniRef50_C5RGJ7 Two component transcriptional regulator, LuxR fa... 237 2e-61 UniRef50_Q024A4 Two component transcriptional regulator, LuxR fa... 237 2e-61 UniRef50_A1VB77 Two component transcriptional regulator, LuxR fa... 237 2e-61 UniRef50_D1B9T1 Two component transcriptional regulator, LuxR fa... 237 2e-61 UniRef50_Q3A5X6 Transcriptional regulator, LuxR family n=2 Tax=P... 237 2e-61 UniRef50_C5SGD8 Two component transcriptional regulator, LuxR fa... 236 2e-61 UniRef50_C5UZV9 Two component transcriptional regulator, LuxR fa... 236 2e-61 UniRef50_A1ATT6 Two component transcriptional regulator, LuxR fa... 236 2e-61 UniRef50_C6DD36 Two component transcriptional regulator, LuxR fa... 236 2e-61 UniRef50_A9DM99 Transcriptional regulator, LuxR family protein n... 236 2e-61 UniRef50_C0A9E4 Response regulator receiver protein n=1 Tax=Opit... 236 3e-61 UniRef50_A5URU4 Two component transcriptional regulator, LuxR fa... 236 3e-61 UniRef50_A9FM25 DNA-binding response regulator n=1 Tax=Sorangium... 236 3e-61 UniRef50_Q1AST2 Two component transcriptional regulator, LuxR fa... 236 3e-61 UniRef50_C4XMF2 NarL family two-component response regulator n=1... 236 3e-61 UniRef50_Q5NZZ3 Two-component system response regulator n=3 Tax=... 236 3e-61 UniRef50_A2SCN0 Two-component response regulator n=1 Tax=Methyli... 236 4e-61 UniRef50_Q0B0G6 Response regulator receiver protein n=1 Tax=Synt... 236 4e-61 UniRef50_Q47DK2 Two component transcriptional regulator, LuxR fa... 236 5e-61 UniRef50_Q5NZX4 Two-component response regulator n=3 Tax=Betapro... 235 5e-61 UniRef50_C6WV69 Two component transcriptional regulator, LuxR fa... 235 5e-61 UniRef50_UPI00017452CB response regulator with a HTH DNA-binding... 235 5e-61 UniRef50_B9E7V9 Two-component response regulator n=65 Tax=Staphy... 235 6e-61 UniRef50_D1BCA8 Two component transcriptional regulator, LuxR fa... 235 7e-61 UniRef50_A1ZEE6 Two-component response regulator n=2 Tax=Microsc... 235 8e-61 UniRef50_Q0A525 Two component transcriptional regulator, LuxR fa... 235 8e-61 UniRef50_D2PZN7 Two component transcriptional regulator, LuxR fa... 235 9e-61 UniRef50_B5EEC0 Two component transcriptional regulator, LuxR fa... 235 9e-61 UniRef50_C5B7B5 Nitrate/nitrite response regulator protein NarP ... 235 9e-61 UniRef50_C6C0G1 Two component transcriptional regulator, LuxR fa... 235 1e-60 UniRef50_B9MPQ9 Two component transcriptional regulator, LuxR fa... 235 1e-60 UniRef50_C4ZM15 Two component transcriptional regulator, LuxR fa... 234 1e-60 UniRef50_A5FAZ3 Two component transcriptional regulator, LuxR fa... 234 1e-60 UniRef50_B4DAD9 Two component transcriptional regulator, LuxR fa... 234 2e-60 UniRef50_B9PAD6 Predicted protein n=33 Tax=cellular organisms Re... 233 2e-60 UniRef50_D2QF32 Two component transcriptional regulator, LuxR fa... 233 2e-60 Sequences not found previously or not previously below threshold: UniRef50_Q2LSF1 Two-component response regulator n=4 Tax=Deltapr... 260 2e-68 UniRef50_D1AEE5 Two component transcriptional regulator, LuxR fa... 253 2e-66 UniRef50_C7MN84 Response regulator containing a CheY-like receiv... 252 6e-66 UniRef50_A4J6C2 Two component transcriptional regulator, LuxR fa... 250 2e-65 UniRef50_C7MUJ2 Response regulator containing a CheY-like receiv... 248 6e-65 UniRef50_B2J2N1 Two component transcriptional regulator, LuxR fa... 247 2e-64 UniRef50_D1XHI5 Two component transcriptional regulator, LuxR fa... 247 2e-64 UniRef50_B0C756 Two-component transcriptional regulator, LuxR fa... 245 5e-64 UniRef50_UPI0001746AEC response regulator with a HTH DNA-binding... 244 1e-63 UniRef50_D1CF52 Two component transcriptional regulator, LuxR fa... 243 3e-63 UniRef50_B0C955 Two-component transcriptional regulator, LuxR fa... 243 3e-63 UniRef50_B4CWX5 Two component transcriptional regulator, LuxR fa... 242 4e-63 UniRef50_Q8YV43 Two-component response regulator n=7 Tax=Bacteri... 242 5e-63 UniRef50_D2AX12 Response regulator receiver protein n=100 Tax=Ac... 242 7e-63 UniRef50_A5V148 Two component transcriptional regulator, LuxR fa... 241 1e-62 UniRef50_D1C6S1 Two component transcriptional regulator, LuxR fa... 240 2e-62 UniRef50_A0K2I9 Two component transcriptional regulator, LuxR fa... 240 2e-62 UniRef50_P0C0Z1 Response regulator protein vraR n=123 Tax=Firmic... 240 2e-62 UniRef50_B2J8J5 Two component transcriptional regulator, LuxR fa... 239 4e-62 UniRef50_A7NIZ3 Two component transcriptional regulator, LuxR fa... 238 7e-62 UniRef50_A7NP18 Two component transcriptional regulator, LuxR fa... 238 7e-62 UniRef50_D1VBH1 Two component transcriptional regulator, LuxR fa... 238 9e-62 UniRef50_C7MRK0 Response regulator containing a CheY-like receiv... 237 1e-61 UniRef50_A9AX03 Two component transcriptional regulator, LuxR fa... 237 1e-61 UniRef50_A8L9Z7 Two component transcriptional regulator, LuxR fa... 237 2e-61 UniRef50_Q2BNR9 DNA-binding response regulator, LuxR family prot... 237 2e-61 UniRef50_A9WA66 Response regulator receiver n=2 Tax=Chloroflexus... 237 2e-61 UniRef50_Q5WI37 Two-component response regulator n=5 Tax=Bacilla... 236 5e-61 UniRef50_A0M4P6 Two-component system response regulator n=5 Tax=... 235 5e-61 UniRef50_Q47FR0 Two component transcriptional regulator, LuxR fa... 235 6e-61 UniRef50_C3JVF4 Two component transcriptional regulator, LuxR fa... 235 1e-60 UniRef50_B5JFN7 Response regulator receiver domain protein n=1 T... 234 2e-60 >UniRef50_C0QFU8 TRAP-type C4-dicarboxylate transporter, periplasmic solute-binding protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QFU8_DESAH Length = 219 Score = 279 bits (716), Expect = 3e-74, Method: Composition-based stats. Identities = 62/212 (29%), Positives = 114/212 (53%), Gaps = 9/212 (4%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ +DH + + +LL + DIE++ E G A++ VE L PD+V++D+ +P +N Sbjct: 4 IKVLVAEDHTIVRKGLCSLLYSEPDIEVVGEAENGREAIKMVEELAPDVVLMDISMPELN 63 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ L+K+ I+I+S + Y AGA+G++ K+ ++I AI AA G Sbjct: 64 GMDATRQLKKKYPDVKILILSMHSTEEYIFETLRAGASGYLIKRSAPTDLIKAIHAAHAG 123 Query: 120 YCYFPFSLNRFV--------GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFIS 171 C+ S+++ V L+ + + LD LS +E V++ I +G N +IA ++IS Sbjct: 124 DCFLSPSISKKVIKNYVQQKQGLSLEPRGLDLLSAREREVLQLIAEGHANREIAGHLYIS 183 Query: 172 NKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 KTV +++ + +KL +L +A R + Sbjct: 184 PKTVEAHRNHIQKKLGLNGTAELTKYAIRKGL 215 >UniRef50_B7GL14 DNA-binding response regulator, NarL family (REC-HTH domains) n=30 Tax=Bacillales RepID=B7GL14_ANOFW Length = 260 Score = 270 bits (693), Expect = 1e-71, Method: Composition-based stats. Identities = 61/218 (27%), Positives = 105/218 (48%), Gaps = 17/218 (7%) Query: 2 NAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 ++IDDH L I+ +L + D E++AE ++G A+ VE KPD+VI+D+++P VNG Sbjct: 38 RIVLIDDHKLFREGIKRILDFEQDFEVVAEGSDGDEALALVERYKPDVVIMDINMPHVNG 97 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 ++ L + +II+S +D Y H GA G++ K+ + +I A+ G Sbjct: 98 VEATRQLIEAYPDTKVIILSIHDDESYVMHALQTGAMGYLLKEMDADALIEAVRVVAEGG 157 Query: 121 CYFPFSLN--------RFVGSLTSDQQ--------KLDSLSKQEISVMRYILDGKDNNDI 164 Y + R V ++ L+++E V++ + DGK N I Sbjct: 158 SYLHPKVTHNLVKEYRRLVAGEGGGKEKQNQDVCRPYHLLTRRECEVLQLLADGKSNKGI 217 Query: 165 AEKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNK 202 A+ ++IS KTV + S +++KL A +N Sbjct: 218 ADALYISEKTVKNHVSNILQKLNVNDRTQAVVVAIKNG 255 >UniRef50_D2BDI1 Response regulator receiver protein n=8 Tax=Actinomycetales RepID=D2BDI1_STRRD Length = 227 Score = 269 bits (689), Expect = 4e-71, Method: Composition-based stats. Identities = 57/208 (27%), Positives = 104/208 (50%), Gaps = 4/208 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDHPL +R LL + E++ E +G A+ V +L PD+V++D+ +PGV Sbjct: 19 IRVLLVDDHPLLRHGLRALLEQVGGAEVVGEAGDGEEAIALVLSLNPDVVVMDLVMPGVT 78 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ TL R+ +++++ D AGA G+V K N+ IAA+ A G Sbjct: 79 GIEATRTLIDRRPDLGVLVLTMSEDDASVFAALRAGARGYVLKGADGNDFIAAVRAVARG 138 Query: 120 YCYFPFSLNRFVGSLT---SDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 + ++ R + + L+++E ++ + GK N +IA ++F+S KTV Sbjct: 139 EAVYGPAVARRIRRFLTTGPESGPFPELTQREREILDLLASGKSNAEIARRLFLSQKTVK 198 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKIG 204 + + + KL+ A+R +G Sbjct: 199 NHLTSIFAKLQVADRTQAVVRARRAGLG 226 >UniRef50_P0ACZ6 Positive transcription regulator evgA n=68 Tax=Enterobacteriaceae RepID=EVGA_ECO57 Length = 204 Score = 268 bits (687), Expect = 7e-71, Method: Composition-based stats. Identities = 204/204 (100%), Positives = 204/204 (100%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG Sbjct: 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY Sbjct: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 Query: 121 CYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKS 180 CYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKS Sbjct: 121 CYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKS 180 Query: 181 RLMEKLECKSLMDLYTFAQRNKIG 204 RLMEKLECKSLMDLYTFAQRNKIG Sbjct: 181 RLMEKLECKSLMDLYTFAQRNKIG 204 >UniRef50_C8WSR5 Two component transcriptional regulator, LuxR family n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WSR5_ALIAD Length = 231 Score = 265 bits (679), Expect = 6e-70, Method: Composition-based stats. Identities = 49/213 (23%), Positives = 97/213 (45%), Gaps = 9/213 (4%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH L + +L I ++ E G A++ +TL+PD+ ++D+ +P N Sbjct: 10 IKVLVVDDHELFRRGVVTVLRSTPGIYVVGEAGNGREAIECFQTLQPDVTLLDIHMPVCN 69 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ +R+ + I++++ +GA+G+V K +I + G Sbjct: 70 GLETARKMREANPNTKILMLTVSETEEMLFEAVKSGASGYVLKSVSPERLIECVRQVYEG 129 Query: 120 YCYFPFSLN--------RFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFIS 171 P SL R + + + L+++E V++Y+ G N +IA +FIS Sbjct: 130 EPVVPSSLAMKMIAEFSRTAETRMPSSESVTELTEREREVLQYLSAGASNKEIARALFIS 189 Query: 172 NKTVSTYKSRLMEKLECKSLMDLYTFAQRNKIG 204 TV + +++KL + +A RN I Sbjct: 190 ENTVRNHVRHILDKLHLSNRAQAAAYAVRNGIA 222 >UniRef50_Q2RJU9 Two component transcriptional regulator, LuxR family n=3 Tax=Clostridia RepID=Q2RJU9_MOOTA Length = 222 Score = 265 bits (679), Expect = 7e-70, Method: Composition-based stats. Identities = 47/210 (22%), Positives = 99/210 (47%), Gaps = 7/210 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I DDH L IR +L + D++++ E G A++ +P ++I+D+++PG+N Sbjct: 7 ITILIADDHSLVREGIRKILELEPDLQVVGEAATGQEAIEMTRRYQPQVIIMDINMPGLN 66 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ + +R+ I+ ++ +D Y +G +G+V K ++ A+ G Sbjct: 67 GIEATKVIRQEWPQIAILALTIHDDEEYIIELLRSGVSGYVLKDISAEELVQAVYQVARG 126 Query: 120 YCYFPFSLNRFVGSLTSDQQKLD------SLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 + + V Q+ L+ +E ++ ++ GK N +IA ++FIS K Sbjct: 127 ARVIHPGVAQKVIGCIQKQKPFTPAPVSIPLTAREREILIHVSLGKSNREIARELFISEK 186 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TV + + + K+ +A ++ + Sbjct: 187 TVKNHLTHIFHKIGVSDRTQAALYALKHGL 216 >UniRef50_B4VFW8 Two-component system response regulator n=2 Tax=Bacteria RepID=B4VFW8_9ACTO Length = 216 Score = 265 bits (678), Expect = 9e-70, Method: Composition-based stats. Identities = 55/208 (26%), Positives = 105/208 (50%), Gaps = 4/208 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH + +R L + DIE++ E ++G + R E L+PD++++D+ +PG + Sbjct: 8 VRVLLVDDHQVVRRGLRTFLEVQEDIEVVGEASDGEEGIARAEELRPDVILMDIKMPGTD 67 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ L LR+ ++IV++ + AGA G+V K + + AI + G Sbjct: 68 GIEALRRLRELANPARVLIVTSFTEQRTVVPALRAGAAGYVYKDIDPDALAGAIRSVHAG 127 Query: 120 YCYFPFSLNRFV---GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 + + + + +L+ +E V+ +I DG+ N +IA + +S KTV Sbjct: 128 HVLLQPEVAVALLTQDDQGPSSSRGGALTDREREVLSHIADGRSNREIARALVLSEKTVK 187 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKIG 204 T+ S ++ KL+ +A R+ IG Sbjct: 188 THVSNILMKLDVADRTQAALWAVRHGIG 215 >UniRef50_Q1J0X7 Two component transcriptional regulator, LuxR family n=5 Tax=Bacteria RepID=Q1J0X7_DEIGD Length = 228 Score = 265 bits (678), Expect = 9e-70, Method: Composition-based stats. Identities = 52/207 (25%), Positives = 102/207 (49%), Gaps = 5/207 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDHP+ R LL + D+ ++ E G A+ + L PD++++DV +PG+N Sbjct: 15 ITLLLVDDHPVVRKGTRELLEGEADLRVVGEAESGEEAILKARQLMPDVILMDVSMPGMN 74 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ ++ + I+++++ +D Y +AGA G++ K + ++ A+ A G Sbjct: 75 GIEATRAIKAERPGVGILVLTSYDDDAYVFALLEAGAAGYLLKNASEDELLGAVRAVAAG 134 Query: 120 YCYFPFSLNRFVGSLTS----DQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 ++ R V S D+LS +E+ V+R G+ N +IA + IS +TV Sbjct: 135 ESALHPAVARKVLERFSTHQTPTPPEDALSPRELEVLRVAATGRTNKEIARDLDISPRTV 194 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNK 202 + + + KL S + + + Sbjct: 195 QVHLANIFSKLGVGSRTEAVLYGIKRG 221 >UniRef50_A0LVS2 Two component transcriptional regulator, LuxR family n=35 Tax=Actinomycetales RepID=A0LVS2_ACIC1 Length = 303 Score = 264 bits (676), Expect = 1e-69, Method: Composition-based stats. Identities = 59/213 (27%), Positives = 109/213 (51%), Gaps = 10/213 (4%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH L + +L + DI+++AE ++G AV R PD+V++DV +P Sbjct: 87 IKVLVADDHALFRRGLEMVLRQEPDIQLVAEASDGAEAVARAAETLPDVVLLDVRMPKRT 146 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ +++ S II+++ ++ AGA G++ K+ ++ + AAI A G Sbjct: 147 GIEACAAIKEVCPSAKIIMLTISDEEADLYEAIKAGAMGYLLKEISIDEVAAAIRAVHGG 206 Query: 120 YCYFPFSLN-RFVGSLTS--------DQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFI 170 S+ + + S Q L+++E+ V+R + G +N DIA+++FI Sbjct: 207 QSLISPSMASKLLNEFASLIKRGDARHQVPAPKLTEREMEVLRLVAKGLNNRDIAKQLFI 266 Query: 171 SNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 S TV + ++EKL+ S M+ +A R K+ Sbjct: 267 SENTVKNHVRNILEKLQLHSRMEAVVYAVREKL 299 >UniRef50_Q1LEP5 Two component transcriptional regulator, LuxR family n=3 Tax=Burkholderiaceae RepID=Q1LEP5_RALME Length = 214 Score = 263 bits (675), Expect = 2e-69, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 108/206 (52%), Gaps = 3/206 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + II DDH + +R++L + +D E++ E G Q V L P ++++D+ +PG N Sbjct: 2 IRVIIADDHTVVRNGLRHILERTSDFEVVGEAARGTEVPQLVRELSPHVILLDLSMPGRN 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++++ LR + I++++ + Y AGA G+++K+ ++ A+ G Sbjct: 62 GLELIRQLRTDHPALRILVLTMHAEEQYVVRAFRAGAAGYLTKESAATELVEALRKVAAG 121 Query: 120 YCYFPFSLNRFVGSLTSDQQ--KLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 Y ++ + ++ + LS +E+ V R I+DG+ IA + +S KTVST Sbjct: 122 GTYVSPAMAEKLALGLQEKPDAPHEGLSDRELEVFRRIVDGESLTQIAAALCVSAKTVST 181 Query: 178 YKSRLMEKLECKSLMDLYTFAQRNKI 203 YK RLMEKL+ +S L +A ++ Sbjct: 182 YKMRLMEKLQLRSDAALVRYAIEARL 207 >UniRef50_Q5HLK6 Oxygen regulatory protein nreC n=71 Tax=Firmicutes RepID=NREC_STAEQ Length = 218 Score = 263 bits (674), Expect = 3e-69, Method: Composition-based stats. Identities = 61/215 (28%), Positives = 105/215 (48%), Gaps = 12/215 (5%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIP-GV 58 M +I DDH + +L + D+E++A +G A Q+V +PD++I+D+ +P G Sbjct: 1 MKIVIADDHAVVRTGFSMILNYQEDMEVVATAADGVEAYQKVLEHRPDVLILDLSMPPGE 60 Query: 59 NGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKN 118 +G+ + + I+I++ +D Y H +GA G++ K +I A+ Sbjct: 61 SGLIATSKISESFPDTKILILTMFDDEEYLFHVLKSGAKGYILKNSPDEQLILAVRTVYQ 120 Query: 119 GYCYFPFSLNRFV----------GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKM 168 G Y L + ++S LSK+E+ ++ I G N DIAEK+ Sbjct: 121 GETYVDMKLTTSLVNEFVNQSQTDEVSSSSDPFKILSKRELEILPLIAKGYGNKDIAEKL 180 Query: 169 FISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 F+S KTV +K+ +M KL KS +L +A + K+ Sbjct: 181 FVSVKTVEAHKTHIMTKLNLKSKPELVEYALKKKL 215 >UniRef50_C7RBI1 Two component transcriptional regulator, LuxR family n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RBI1_KANKD Length = 212 Score = 263 bits (673), Expect = 3e-69, Method: Composition-based stats. Identities = 51/209 (24%), Positives = 108/209 (51%), Gaps = 6/209 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH + + +LL K+ D ++AE + G AV++ +P + +ID+ +P +N Sbjct: 2 IRVMLADDHTILRQGLVSLLSKDADCTVVAEASNGLEAVEKALETRPQVAVIDISMPELN 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++V++ + + I++++ + Y H AGA+G++ K +I A++A G Sbjct: 62 GMEVVKRIHDKLPECKILVLTMHEEQEYVIHMVRAGASGYLLKDSASEELIDAVKALATG 121 Query: 120 YCYFPFSLNRFVGSLTSD-----QQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 Y+ + + S Q +L+++E V ++DGK DIA + IS KT Sbjct: 122 KTYYSQYAASVLATQYSQPDKEWQDPYKNLTQREREVFHLVVDGKTTKDIARTLDISVKT 181 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 ++ ++++KL + +L +A ++ + Sbjct: 182 AENHRGKVLDKLGVSNTAELVRYAAKHNL 210 >UniRef50_A1HU08 Two component transcriptional regulator, LuxR family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HU08_9FIRM Length = 216 Score = 263 bits (673), Expect = 4e-69, Method: Composition-based stats. Identities = 70/208 (33%), Positives = 116/208 (55%), Gaps = 5/208 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I+DDH L + +R +L + DIE++ E +G + + ++PD+V++D+ +P ++ Sbjct: 4 IKVLIVDDHTLMRSGLRLMLSAQEDIEVVGEAADGSGGIAMAQKMRPDVVLLDISMPEMS 63 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ L+TL Q +I+++ D Y K GA G+V KK + + A+ A +G Sbjct: 64 GLECLKTLLANQPDLRVILLTMHEDARYVKEGFALGAMGYVLKKAADDVLYQAVRAVYSG 123 Query: 120 YCYFPFSLNRFVGSLTSDQQKLD----SLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 Y S+ + V + +++ + D LS QE V+ I G N +IAE++ IS KTV Sbjct: 124 EMYIQPSITKAVVAELTERPRADDLRKPLSDQEKKVLSLIAAGYANREIAEQLVISVKTV 183 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKI 203 TYK R+MEKL CK DL FA N + Sbjct: 184 ETYKYRIMEKLNCKKRSDLVKFALDNGL 211 >UniRef50_B1Y743 Two component transcriptional regulator, LuxR family n=6 Tax=Bacteria RepID=B1Y743_LEPCP Length = 211 Score = 263 bits (673), Expect = 4e-69, Method: Composition-based stats. Identities = 55/207 (26%), Positives = 105/207 (50%), Gaps = 4/207 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 M I DDHP+ ++ LL + D + E + G + + D+ ++D +PG Sbjct: 3 MRVFIADDHPVVRQGLKQLLGAEADFSVAGEASSGHEVIDQCGRFAWDVAVLDYRMPGKG 62 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI +++ LR+R ++++S + Y AGA G+++K+ +++ AI G Sbjct: 63 GIDLIKELRQRFPDRPVLVLSVCPEDQYAMRVLRAGAAGYLTKESAPEDLVNAIRKVARG 122 Query: 120 YCYFPFSLNRFVG---SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 + +L + S D+ LS +E +M + GK +IA+++F+S T+S Sbjct: 123 GRFVSAALGEQLALSLSTGGDEPLHCRLSDREYQIMWLLASGKKVGEIAQQLFLSPNTIS 182 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKI 203 TY+ R++EKL+ KS +L +A +++ Sbjct: 183 TYRKRILEKLDLKSNAELMRYAIGHQL 209 >UniRef50_Q01NJ8 Two component transcriptional regulator, LuxR family n=2 Tax=Acidobacteria RepID=Q01NJ8_SOLUE Length = 224 Score = 262 bits (671), Expect = 5e-69, Method: Composition-based stats. Identities = 59/211 (27%), Positives = 103/211 (48%), Gaps = 9/211 (4%) Query: 2 NAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 ++ DDH L +R LL + D+E+ E AV + L+PD+V++D+ + G++ Sbjct: 5 KILLTDDHTLFRQGVRTLLAAEADMEVAGEAANAMDAVALAQQLRPDVVLMDIGMAGMSS 64 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 + +RK + +I +S +D Y C D GANG++ K + +I AI + G Sbjct: 65 FEATRLIRKERPEVKVIFLSMYDDEDYLAECVDMGANGYILKDSPADQLITAIREVQRGG 124 Query: 121 CYFPFS-LNRFVGSLT-------SDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 Y L+R V + + +L+K+E +++ + +GK +IA +S Sbjct: 125 SYLSPRLLSRLVDDFRLQGRGGGTRSPRFGTLTKREREILKMLAEGKSVKEIAAFFELSV 184 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 KTV +K LM KL+ + L +A + KI Sbjct: 185 KTVEAHKFNLMRKLDIHNKAQLVQYAIQKKI 215 >UniRef50_A8MF72 Two component transcriptional regulator, LuxR family n=14 Tax=Clostridia RepID=A8MF72_ALKOO Length = 224 Score = 262 bits (671), Expect = 6e-69, Method: Composition-based stats. Identities = 58/211 (27%), Positives = 103/211 (48%), Gaps = 8/211 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 +N +I DDH L ++ ++ + DI+++ +G AV + + L PD+V++D+ +P N Sbjct: 11 INVLIADDHALVRQGLKQIIELEPDIKVIGLAADGEEAVLKTQQLSPDVVLLDISMPKQN 70 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GIQ L L+ + II+++ D Y + GANG+V K ++I AI G Sbjct: 71 GIQTLRRLKDMDSTIKIIMLTFHEDREYLFETINLGANGYVLKDAESESLIKAIRDVYQG 130 Query: 120 YCYF-PFSLNRFVGSLTSDQQK------LDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 Y P V + K D L+++E V+ + +G +N +I + +FIS Sbjct: 131 LNYIYPTLATELVKEFNRREVKSQKRNNEDELTRREYEVLTLLAEGINNKEIGDCLFISE 190 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 KTV + S + +K+ +A ++ I Sbjct: 191 KTVKNHVSNIFKKINVNDRTQAAIYAYKHNI 221 >UniRef50_D1AAU8 Two component transcriptional regulator, LuxR family n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1AAU8_THECD Length = 220 Score = 262 bits (670), Expect = 6e-69, Method: Composition-based stats. Identities = 58/209 (27%), Positives = 101/209 (48%), Gaps = 5/209 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 + +I DDHP+ +R LL +E++ E G AVQ L+PD+V++D+ +PG NG Sbjct: 10 IRVLITDDHPVFRQGLRGLLEALGVEVVGEAESGPQAVQLAAELQPDVVVMDLHMPGGNG 69 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 I+ T+ + +++++ D AGA G++ K+ G I A+ A G Sbjct: 70 IEATRTITRTSPRIGVLVLTMFRDDDSVFAAMRAGARGYLLKESGAEEIARAVRAVAAGE 129 Query: 121 CYFPFSLNRFVGSLTSD-----QQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 + + R V + +D Q L+++E V++ I G+ N +IA+ +F+S KTV Sbjct: 130 AIYGPEIARRVLTYFADMPDPKQTAFPELTEREREVLQLIAQGRSNGEIAQTLFLSPKTV 189 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKIG 204 + S + KL A+ +G Sbjct: 190 RNHVSNIFMKLHVADRAQAIVLAREAGLG 218 >UniRef50_Q1GIA7 Two component transcriptional regulator, LuxR family n=29 Tax=Alphaproteobacteria RepID=Q1GIA7_SILST Length = 233 Score = 261 bits (669), Expect = 9e-69, Method: Composition-based stats. Identities = 54/204 (26%), Positives = 103/204 (50%), Gaps = 3/204 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I+DDHP+ I+++L DIE++ ++ G A+ R E L PD++++D+++P V Sbjct: 24 IRVLIVDDHPMVAEGIQSILESYGDIEVVGAVSSGREAIARAEALVPDVILMDLNMPDVG 83 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ E +++R ++I+S + Y GA G+V K I AI+A G Sbjct: 84 GLSATEIIQERCPEIRVLILSMHDSPEYITTALSHGAVGYVLKDVQPEEIKTAIDAVMRG 143 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 Y + Q ++L+ +E +++ + GK N ++A+ + IS +TV T++ Sbjct: 144 EQYLCTGAAGSLS--PQSQTSREALTGREQTILLELAQGKSNKEVAQALDISVRTVETHR 201 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 + KL S L +A + + Sbjct: 202 KNIKRKLGISSTAGLTRYALEHGV 225 >UniRef50_A5F1Q5 Transcriptional regulator, LuxR family n=54 Tax=Gammaproteobacteria RepID=A5F1Q5_VIBC3 Length = 216 Score = 260 bits (667), Expect = 1e-68, Method: Composition-based stats. Identities = 51/206 (24%), Positives = 108/206 (52%), Gaps = 3/206 (1%) Query: 1 MNAIIIDDHPLAIAA-IRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH + + I L + +IE++A + G A++ V+ +PD+V++DV +P +N Sbjct: 9 IRVVMVDDHQVVLDGFIARLEQEPEIEVVATASNGLEALELVKLHQPDVVLMDVSMPIMN 68 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ +++ +++++ ++ Y AGA G++ K+ ++ AI+ G Sbjct: 69 GIEATRLIKEEVPHTKVLMLTMHDNREYIMQVMQAGAMGYMLKEISALKMVQAIKTVHQG 128 Query: 120 YCYFPFSLNR--FVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 YF S F + K + LS++E +++R + G + IA + IS +TV T Sbjct: 129 ATYFCESTTSTLFSQEILPVANKPNPLSRREEAILRMVAQGCSSKKIATLLNISYRTVET 188 Query: 178 YKSRLMEKLECKSLMDLYTFAQRNKI 203 ++ + KL+ S +L +A ++ + Sbjct: 189 HRQNIKHKLDIHSTAELAQYALQHGL 214 >UniRef50_B9L2G4 Transcriptional regulatory protein degU n=2 Tax=Thermomicrobia (class) RepID=B9L2G4_THERP Length = 246 Score = 260 bits (667), Expect = 2e-68, Method: Composition-based stats. Identities = 52/209 (24%), Positives = 103/209 (49%), Gaps = 6/209 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I+DDH L +R L+ + IE++ E G A++ V L+PD+V++D+++PG++ Sbjct: 28 IRVLIVDDHDLFREGLRQLIETDPAIEVVGEAANGQDALKMVAELQPDVVLMDINMPGMD 87 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ E + ++ +++++ +D Y H AGA ++ K ++ AI A G Sbjct: 88 GIRATEAIVQQYRHVHVLMLTMYDDEEYVLHAIRAGARSYLVKNSKPEELLRAIHVAAEG 147 Query: 120 YCYFPFSLNRFVGS-----LTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 L + LT + LS +E++++R + G +N IA+ + ++ T Sbjct: 148 GATIDPDLAPILMREYQRLLTKAPTRGQDLSDRELTMLRLLAQGYNNRQIADALNLAEST 207 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 V S L +KL + +A + + Sbjct: 208 VKNNLSALFQKLGVRDRTQAVIYAISHGL 236 >UniRef50_A0RDP4 DNA-binding response regulator n=75 Tax=Bacillaceae RepID=A0RDP4_BACAH Length = 221 Score = 260 bits (666), Expect = 2e-68, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 106/205 (51%), Gaps = 3/205 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++++DH + + L + + EI+ E G A+ V T +PD+V++D+ +P ++ Sbjct: 15 IKLLLVEDHHIVRRGLVFFLKTREEFEIVGEAENGEDALTFVRTERPDVVLMDLSMPKMD 74 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ + +++ + I+I+S+ ++ Y +AGA+G+ K+ ++A+I A G Sbjct: 75 GIEATKQIKQYDETIKILILSSFSEQDYVLPALEAGADGYQLKEVQPEQLVASIIAIYEG 134 Query: 120 YCYFPFSLNRFV--GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 F + + S + L+K+E V++ I G+ N +IA ++ I+ +TV T Sbjct: 135 NANFHPKVTPALLGRSAVKKENPFSMLTKREQEVLQEIAKGRSNKEIAAELHITEQTVKT 194 Query: 178 YKSRLMEKLECKSLMDLYTFAQRNK 202 + S ++ KLE +A ++ Sbjct: 195 HVSNILAKLEVDDRTQAALYAVKHG 219 >UniRef50_B8FFJ9 Two component transcriptional regulator, LuxR family n=2 Tax=Desulfobacteraceae RepID=B8FFJ9_DESAA Length = 212 Score = 260 bits (666), Expect = 2e-68, Method: Composition-based stats. Identities = 59/208 (28%), Positives = 111/208 (53%), Gaps = 5/208 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH + A +R ++ DI+++ E + G A+ PD+ ++D+ +PG++ Sbjct: 2 IRVLLADDHVIVRAGLRRIIEDSEDIKVIVEASNGKEAIDLTLEHCPDVAVVDISMPGID 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++V+ L ++I++ + Y +AGA G+++KK ++ AI +G Sbjct: 62 GLEVVSRLHAELPDLPMLILTMHEEEQYVVRAIEAGAMGYMTKKSAPEQLVTAIRKLHSG 121 Query: 120 YCYFPFSLNRFVGSLTSDQQK----LDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 + + S K LDSLSK+E+ V+R++ G N +IA+ IS KTV Sbjct: 122 SRFLTEEAAELLALRVSRWSKGGSLLDSLSKRELQVLRHLASGHTNREIADSYHISVKTV 181 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKI 203 TY++RL++KL ++ D+ FA +N + Sbjct: 182 DTYRARLLKKLNLRNNADISRFAIQNNL 209 >UniRef50_B9L0H3 Transcriptional regulatory protein degU n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L0H3_THERP Length = 245 Score = 260 bits (666), Expect = 2e-68, Method: Composition-based stats. Identities = 55/217 (25%), Positives = 103/217 (47%), Gaps = 15/217 (6%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 +N +I+DDHPL + IR L +N I+ E +G A++ + L PD++++D+ +PG+N Sbjct: 4 INILIVDDHPLFRSGIRWSLEQNPQFVIVGEAADGSEALRLADELSPDVILVDLSLPGMN 63 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++V L++RQ +II++ D + AGA+ + +K +I I G Sbjct: 64 GLEVARALKRRQPQAGVIILTMHQDDEQLFNAIRAGASAYCTKDIEPEQLIDVITRVARG 123 Query: 120 YCYF-------PFSLNRFVGSL-------TSDQQKLDSLSKQEISVMRYILDGKDNNDIA 165 PF +R + + L+ +EI ++ + G N +IA Sbjct: 124 EYLINEMVLSRPFVASRVLDQFRELSRLDRTSSGFFSPLTPREIEILDCVARGYSNKEIA 183 Query: 166 EKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNK 202 + + IS++TV + + ++ KL +A R+ Sbjct: 184 QALNISDQTVKNHITSILRKLAVNDRTQAVIYALRHG 220 >UniRef50_Q2LSF1 Two-component response regulator n=4 Tax=Deltaproteobacteria RepID=Q2LSF1_SYNAS Length = 217 Score = 260 bits (666), Expect = 2e-68, Method: Composition-based stats. Identities = 47/210 (22%), Positives = 96/210 (45%), Gaps = 7/210 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 +N ++ DDH + +R LL + + ++AE G + L P+I+I+D+ +P +N Sbjct: 3 VNVLLADDHKIVRDGLRTLLETHGSMNVVAEAENGQKTITLARELHPEIIIMDISMPDMN 62 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI + +I +S D + +AGA+G++ K ++ AI+ + Sbjct: 63 GIDATRKITSDLPGIKVIALSMHADRHFVIGMLEAGASGYLLKDCAFEELVNAIQTVLSN 122 Query: 120 YCYFPFSLNRFVGSLTSDQQK------LDSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 + Y ++ V + L+ +E +++ + +G IA + +S K Sbjct: 123 HTYLSPTIADIVVKNYVHKAAGTSVVVSSELTPRERELLQLLAEGLSAKQIAANLHVSVK 182 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TV T++ + +KL S+ +L +A R + Sbjct: 183 TVETHRRNITQKLGVGSVAELIKYAIREGL 212 >UniRef50_B8FDP3 Two component transcriptional regulator, LuxR family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FDP3_DESAA Length = 219 Score = 260 bits (665), Expect = 2e-68, Method: Composition-based stats. Identities = 53/210 (25%), Positives = 108/210 (51%), Gaps = 7/210 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I +DH L +++L+ +++ +++ E G +A++ KPD++++D+ +P +N Sbjct: 6 IKILITEDHALVRKGLKSLISSRSEFQVVGEADNGLAAIEMTRKCKPDLILLDLSMPKMN 65 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ + L+K + I++++ Y GA+G++ K + + AI A +G Sbjct: 66 GLATMRQLKKERPEVKILVITMHASQDYLIPALKEGADGYLLKGDDPQELFMAIRAIMDG 125 Query: 120 YCYFPFSLNRFV------GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 Y L+ + L SL+++E V + + +G N IA+ +FIS K Sbjct: 126 KAYLSSDLSGQLIHSVINPDTREAADPLASLTQREKEVFQLVAEGNTNQQIADLLFISPK 185 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TV +++ LM+KL+ S ++ FA +N I Sbjct: 186 TVDKHRTNLMKKLDLHSAREVSNFALKNGI 215 >UniRef50_A6GFX0 Two component transcriptional regulator, LuxR family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GFX0_9DELT Length = 220 Score = 260 bits (665), Expect = 3e-68, Method: Composition-based stats. Identities = 53/211 (25%), Positives = 117/211 (55%), Gaps = 8/211 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++++DH + ++ LL D+E++ E+ +G +AV+ E L PD+V++D+++P ++ Sbjct: 5 VRVLLVEDHTIVREGLKALLTATEDLEVVGEVADGRAAVEAAERLAPDVVVMDINMPKLD 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ +R++ + ++I+S + Y + AGA+G++ K G+++++ AI G Sbjct: 65 GVGATREIREKVNAPRVLILSMYDGEEYVRPAIRAGASGYLLKGSGLSDLVTAIREVAGG 124 Query: 120 YCYFPFSLNRFV-------GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 +F ++ + + S+ DSL+K+E V+ + +GK + +IA+ + +S Sbjct: 125 NAFFSPTVAKILLQESRGERSVKEAPDPADSLTKREREVLTLVGEGKSSPEIAKILGLSV 184 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 KT+ ++ R+M KL ++ L A R + Sbjct: 185 KTIEGHRGRIMAKLGVHNVAGLVRQAIRIGL 215 >UniRef50_B8D0J2 Two component transcriptional regulator, LuxR family n=1 Tax=Halothermothrix orenii H 168 RepID=B8D0J2_HALOH Length = 211 Score = 259 bits (664), Expect = 3e-68, Method: Composition-based stats. Identities = 51/203 (25%), Positives = 98/203 (48%), Gaps = 1/203 (0%) Query: 2 NAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 ++ DDH L I LL DI+++ E +G V+ V PD+V++D+++P + G Sbjct: 5 KVLVADDHDLVREGICKLLELYEDIKVVGEAGDGLETVKGVRDHFPDLVLLDLNMPRMGG 64 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 I ++ +++ ++I++ ++ Y +GA G++ K + AI+ G Sbjct: 65 ITAIKKIKEISPGIKVLILTIHDEEEYVYEVIRSGAEGYIQKDVKPEELKRAIDKVIKGD 124 Query: 121 CYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKS 180 FP S V + +++ ++ LS +E V+ + G N IA+++FIS KTV + S Sbjct: 125 KVFPRSTENEVREVVNEKYEVCELSSREQEVLELLAQGMSNKQIAQELFISEKTVKNHVS 184 Query: 181 RLMEKLECKSLMDLYTFAQRNKI 203 ++ KL A + + Sbjct: 185 NILRKLSVNDRTQAVIVALKRGL 207 >UniRef50_Q01NC6 Two component transcriptional regulator, LuxR family n=3 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01NC6_SOLUE Length = 216 Score = 259 bits (664), Expect = 4e-68, Method: Composition-based stats. Identities = 50/211 (23%), Positives = 104/211 (49%), Gaps = 8/211 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH + +R LL +++ + +G AV PD+V++DV +PG+N Sbjct: 4 IRILLADDHTVVRKGLRLLLESHPGFQVIGDAADGRDAVSLAGEHTPDVVVMDVAMPGLN 63 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ + + I+ +S +D Y AGA ++ K +++IAA+ A G Sbjct: 64 GIEAARQISAKLPHTAIVFLSMHSDESYVLKALKAGARAYLLKDSAEHDLIAAVIAVSEG 123 Query: 120 YCYFPFSLNRFV-------GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 +F ++++ + + + L+ +E V++ + +GK+N ++A + +S Sbjct: 124 KAFFSPAISKMLVEDYMRQMQERQIEDSYELLTTREREVLQLLAEGKNNKEVAAILNLSL 183 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TV T++ +++KL S +L +A R + Sbjct: 184 YTVETHRGNILQKLNLHSGAELILYAIRKGV 214 >UniRef50_C1TQ52 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TQ52_9BACT Length = 214 Score = 258 bits (662), Expect = 6e-68, Method: Composition-based stats. Identities = 54/208 (25%), Positives = 107/208 (51%), Gaps = 6/208 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH + ++ LL + D+E++AE G A+ ++PD+ ++DV +P ++ Sbjct: 3 IKILLADDHKILREGVKALLNRQEDMEVVAEAGNGEEALSIAGEIRPDVTVMDVMMPQMD 62 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ + + S ++ +S D + GA GF+ K ++ A+ +G Sbjct: 63 GIEATRRIVEDGSS-RVVALSMYADRSFVSEMLKVGALGFLLKDCASTELVEAVRKVMDG 121 Query: 120 YCYFPFSLNRFVGSL----TSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 Y S++ V L D ++ L+ +E ++ + +G N ++AE++ +S KTV Sbjct: 122 EIYLGPSISHIVAKLYVSSLHDPDDIEPLTPREKEILMLLAEGNTNREVAERLHLSIKTV 181 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKI 203 T++ +M KL+ K+L DL +A RN + Sbjct: 182 GTHRQHIMNKLKLKNLADLVKYAIRNGM 209 >UniRef50_C0QFI8 DNA-binding response regulator (LuxR-family protein) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QFI8_DESAH Length = 220 Score = 258 bits (662), Expect = 7e-68, Method: Composition-based stats. Identities = 57/208 (27%), Positives = 93/208 (44%), Gaps = 6/208 (2%) Query: 2 NAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGI 61 +I DDH + +R LL + +E+ G AV KPDIVI+D+ +P +NG Sbjct: 4 RILIADDHAIVREGLRVLLERKGLEVPWMAENGRQAVCLAVKFKPDIVIMDITMPNMNGS 63 Query: 62 QVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 121 E + + +I +S D Y +AGA +V K + AI+A G Sbjct: 64 IATEKIMQALPRTRVIALSMHADRRYIDRMFNAGAIAYVLKDSAFAELFDAIQAVGRGKY 123 Query: 122 YFPFSLNRFVGSLTSDQQ------KLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 Y S+ + + + +S +E V++ I +G IAE++F+S KTV Sbjct: 124 YISPSIAKTLADSCTSAPDTPQKCPFGRISPREREVLQLIAEGVKTRQIAERLFVSIKTV 183 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKI 203 ++ +M KL S+ L FA + + Sbjct: 184 EAHRRNIMNKLMISSVAGLTRFAIQEGL 211 >UniRef50_A8VTE0 Response regulator receiver protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VTE0_9BACI Length = 219 Score = 258 bits (661), Expect = 7e-68, Method: Composition-based stats. Identities = 62/211 (29%), Positives = 119/211 (56%), Gaps = 9/211 (4%) Query: 2 NAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 +++DDHP+ + ++++L + D ++AE +G SA++ PDI+I+D+ +PG++G Sbjct: 4 RIMLVDDHPVFRSGLKHILCTEADYHVIAEADDGESAIEMAAEANPDIIIMDISMPGLDG 63 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 I+V ++++ I++++ D + K DAGA+G+V K+ ++ A++ NG Sbjct: 64 IEVTREIKRKIPDIRILMLTMYADEAFLKESLDAGASGYVLKRAVDTELVHAVKLVMNGE 123 Query: 121 CYFPFSLNRFV--------GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 Y +L + +++ D + LS++E V++YI G +I+ ++FIS Sbjct: 124 HYIYPTLIPKLYHANQPQQDAVSPDSNQAVELSQREQEVLKYIALGYTQKEISTELFISI 183 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 KTV TYK R+MEK+ K L +A ++ I Sbjct: 184 KTVDTYKKRVMEKIGSKKKSALVRYALKHNI 214 >UniRef50_Q2RMH6 Two component transcriptional regulator, LuxR family n=8 Tax=Bacteria RepID=Q2RMH6_MOOTA Length = 221 Score = 258 bits (660), Expect = 1e-67, Method: Composition-based stats. Identities = 55/213 (25%), Positives = 107/213 (50%), Gaps = 10/213 (4%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIP-GV 58 + +++DDH L +R LL + DIE++ E + E +P++V++D+ + G Sbjct: 3 IRVMLVDDHALVREGLRALLEREGDIEVVGETGSAAGVLALAEESRPEVVVMDLQLGAGR 62 Query: 59 NGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKN 118 NG++ L +++ ++I+S +D ++GA G+V K+ G+ + AI Sbjct: 63 NGVEATRELVEKKPEIKVVILSMYDDEELVFRALESGARGYVLKRAGIEELTTAIRLVAR 122 Query: 119 GYCYFPFSLNRFVGS--------LTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFI 170 G Y + R V + + + L+++E+ V+R +G N +IA ++ I Sbjct: 123 GEAYLDPQIARRVIEGLQERLPFTRASRPEGPELTERELEVLRLAAEGLTNAEIARRLVI 182 Query: 171 SNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 S KTV +++ +M+KL +DL +A +N I Sbjct: 183 SVKTVQAHRANIMQKLGLHDRVDLVKYAIKNGI 215 >UniRef50_A0R9S0 DNA-binding response regulator n=37 Tax=Bacillus RepID=A0R9S0_BACAH Length = 216 Score = 258 bits (660), Expect = 1e-67, Method: Composition-based stats. Identities = 53/208 (25%), Positives = 114/208 (54%), Gaps = 5/208 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH AIR++L ++D+ ++ E + G +++VE +PD +++D+++PG N Sbjct: 5 IKILVVDDHAFLRDAIRSILEDESDMNVVGEASSGDGVLEKVEACRPDCILMDINLPGKN 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ E ++K + +++ + Y AGA+G++ K ++AAI G Sbjct: 65 GIEATELVKKNYPNCRVLVFTMYEHDEYLMDALQAGADGYLLKDSSSEQVVAAIRMLYRG 124 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDS----LSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 + + + + + K++S L+++E ++ ++ G N +IAE ++IS+KTV Sbjct: 125 DSVIHPRMTKKLITYHQQKMKVESNENELTEREKEILFELVKGLSNKEIAEALYISDKTV 184 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKI 203 + +++ +KL KS +A RN++ Sbjct: 185 KIHINKIFKKLNVKSRSQAVIYAVRNQL 212 >UniRef50_O07528 Uncharacterized transcriptional regulatory protein yhcZ n=3 Tax=Bacillus RepID=YHCZ_BACSU Length = 214 Score = 258 bits (660), Expect = 1e-67, Method: Composition-based stats. Identities = 56/209 (26%), Positives = 100/209 (47%), Gaps = 7/209 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 M +I DDH + +R ++DIE++ E G A++ +E KPD+V++D+ +P ++ Sbjct: 1 MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGLEALRVIEETKPDLVLMDLSMPEMD 60 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GIQ ++ ++ II++++ +D + AGA + K ++ G Sbjct: 61 GIQAIKKAIQQFPDTNIIVLTSYSDQEHVIPALQAGAKAYQLKDTEPEELVKT-RQVHGG 119 Query: 120 YC-----YFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 P L +++K L+++E V+ I +GK N +IA +FIS KT Sbjct: 120 EYKLSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTEIANGKSNKEIAAALFISEKT 179 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 V T+ S L+ KLE FA + + Sbjct: 180 VKTHVSNLLAKLEVADRTQAALFAVKYNL 208 >UniRef50_C6BTX3 Two component transcriptional regulator, LuxR family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BTX3_DESAD Length = 217 Score = 257 bits (659), Expect = 1e-67, Method: Composition-based stats. Identities = 57/211 (27%), Positives = 105/211 (49%), Gaps = 7/211 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH + +R+ L +DI+++ E G AV+ L PDI+++D+ +P ++ Sbjct: 5 IKVLLVDDHDIVRIGVRSFLGSFDDIKVVGEAANGQEAVEMTAELSPDIILMDMLMPVMD 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GIQ + +R R+ G II +++ AGA G++ K + ++ AI G Sbjct: 65 GIQAIREIRDRKLPGRIIALTSFATDDKLFPAIKAGAMGYLLKDSTPDELLEAIRRVHRG 124 Query: 120 YCYFPFSLNRFVGSLT------SDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 + R V S S+ D L+ +E+ ++ + GK N IAE+MF+S Sbjct: 125 EPSLAPDIARKVLSELSQPGEDSETPTPDPLTPRELDTLKLVAKGKSNKAIAEEMFVSEA 184 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQRNKIG 204 TV T+ + ++ KL + ++ +A R I Sbjct: 185 TVRTHMTSILSKLHLANRVEATLYALREGIA 215 >UniRef50_B8G137 Two component transcriptional regulator, LuxR family n=3 Tax=Desulfitobacterium hafniense RepID=B8G137_DESHD Length = 217 Score = 256 bits (656), Expect = 3e-67, Method: Composition-based stats. Identities = 69/212 (32%), Positives = 116/212 (54%), Gaps = 9/212 (4%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH + A ++ LL + D+E++ E ++G A+ RV+ L PD+V++D+ +P +N Sbjct: 5 LRIVLADDHAVLRAGLKVLLNAEPDLEVIGEASDGEEAIDRVDDLHPDLVLLDLTMPKLN 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ +E L K+ I++++ +D Y K GA G+V KK +++AI G Sbjct: 65 GVDCIEELLKKHADLKILVLTMHDDEEYLKAVLQVGAKGYVLKKAADVELLSAIRTVARG 124 Query: 120 YCYF-PFSLNRFV-------GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFIS 171 + P FV + +KL LS++E+ V+R + G N DIA+ + +S Sbjct: 125 EMFIYPTMAAEFVYRHLVSPREPEKESKKLKQLSERELEVLRNLALGHTNQDIADLLHVS 184 Query: 172 NKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 KTV TYK+R+MEKLE +L +A N I Sbjct: 185 VKTVETYKARVMEKLEMHKRAELVRYAMENGI 216 >UniRef50_B1ZVM0 Two component transcriptional regulator, LuxR family n=5 Tax=Bacteria RepID=B1ZVM0_OPITP Length = 219 Score = 256 bits (656), Expect = 3e-67, Method: Composition-based stats. Identities = 54/210 (25%), Positives = 98/210 (46%), Gaps = 7/210 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH L A IR LL K + I+ E +G V V T PDI I+D+ +PG+N Sbjct: 5 LKIVLADDHALVRAGIRTLLEKLPGVTIVGEAGDGRETVTLVHTFAPDIAIMDITMPGLN 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G + + ++I+S Y AGA G++ K + A+ A + G Sbjct: 65 GFDATARIAREHPRTKVLILSMHTAEDYVLQALRAGATGYLLKDAATAELQLALNAVRKG 124 Query: 120 YCYFPFSLNRFVGSLTSDQ------QKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 Y S+++ V + Q + +L+ + +++ I +G+ +IA + +S K Sbjct: 125 ETYLSPSISKSVLARFRQQEQDPRAEPTKALTPRMREIVQLIAEGRSTKEIAFLLNLSVK 184 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 T+ T++ LM +L + + +A R + Sbjct: 185 TIETHRMHLMARLGLHDVAGVVRYALRTGL 214 >UniRef50_Q485W6 DNA-binding response regulator n=3 Tax=Alteromonadales RepID=Q485W6_COLP3 Length = 215 Score = 255 bits (654), Expect = 4e-67, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 109/204 (53%), Gaps = 1/204 (0%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 ++ I+DDHP+ ++ L +DI I+ +G A+ + LKPD++++D+ +P +N Sbjct: 9 VSVQIVDDHPMVQGGLKACLSFYDDIIIVGSTDDGSDALNKAIELKPDVILMDISMPTMN 68 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI E + ++ ++I+S ++ + K AGA G++ K I AI+A NG Sbjct: 69 GIDATEIITEQLPETKVLILSMHSNPEFVKSAIQAGAVGYLLKDTTSEEIYYAIKAVANG 128 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 +F S+ + + + + + L+ +E V+ Y+ GK + +IA+ + IS +TV ++ Sbjct: 129 KTHFSSSIAKLLIDNPVNTNESEKLTTREQVVLSYLAKGKTSKEIAKILNISFRTVEAHR 188 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 + KL SL L ++A ++ I Sbjct: 189 RNMKTKLGIHSLAKLISYAVKHGI 212 >UniRef50_C1A9U5 NarL family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A9U5_GEMAT Length = 223 Score = 255 bits (654), Expect = 5e-67, Method: Composition-based stats. Identities = 56/209 (26%), Positives = 100/209 (47%), Gaps = 6/209 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I DDH L +R +L IE++ E + G +AV PD+V++D+ +P + Sbjct: 11 IRVLIADDHALVREGLRYVLDADPGIEVVGEASNGRTAVDLALQHVPDVVVLDITMPEES 70 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ LR+ ++++S + Y + G +G++ K + AAI A G Sbjct: 71 GLKAAARLREALPDTRVLLLSMHDQGEYVREGMRIGTHGYLLKDSAGEELRAAIRAVHAG 130 Query: 120 YCYFPFSLNRFVGSLT-----SDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 +F ++ R + S + +LD L+ +E V+ + G N IA ++ IS +T Sbjct: 131 GTFFSPAVVRRLTSTEVVSEGAPAAQLDLLTPRERDVLAGVARGLTNKAIAAELGISRRT 190 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 V ++ LM KL+ S+ L FA I Sbjct: 191 VEAHRESLMRKLQIHSVAGLTRFALETGI 219 >UniRef50_B8GAC9 Two component transcriptional regulator, LuxR family n=3 Tax=Chloroflexus RepID=B8GAC9_CHLAD Length = 213 Score = 255 bits (654), Expect = 5e-67, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 110/206 (53%), Gaps = 5/206 (2%) Query: 3 AIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGI 61 +++DDH + A +R LL + D+ ++ E + +A+ + TL+PD++++D+ + +G+ Sbjct: 4 ILLVDDHAVLRAGLRLLLESQPDMVVVGEAEDSRTAITQATTLQPDLILLDLSLTNSSGL 63 Query: 62 QVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 121 +++LR I++++ +D Y + AGA+G+V K+ +IAAI A G Sbjct: 64 AAIQSLRAAAPQARILVLTMHDDEGYVRQALAAGAHGYVLKRAADAELIAAIRAVLRGEL 123 Query: 122 YFPFSLNRFVGS----LTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 Y +L R + +SLS++E V+ + G +IA ++ +S KTV T Sbjct: 124 YIHPALTRRLLEDILPQPQPTNPWESLSEREREVLVLVARGYTAAEIAGQLNLSPKTVET 183 Query: 178 YKSRLMEKLECKSLMDLYTFAQRNKI 203 Y++R MEKL +S L FA + + Sbjct: 184 YRTRGMEKLGLRSRAALVQFALDHNL 209 >UniRef50_C6E2Z1 Two component transcriptional regulator, LuxR family n=2 Tax=Geobacter RepID=C6E2Z1_GEOSM Length = 216 Score = 255 bits (654), Expect = 5e-67, Method: Composition-based stats. Identities = 54/210 (25%), Positives = 102/210 (48%), Gaps = 7/210 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH + IR LL + D+ ++AE G A + L P +V++D+ +PG+N Sbjct: 2 IKVMVVDDHSIVREGIRILLERFPDLSVVAEADNGRKASELAADLAPHVVLMDMTMPGLN 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI + L ++I+S D + AGA G++ K ++ A+ G Sbjct: 62 GIDATQRLLAACPEVRVLILSMHKDKRFVSQAFRAGARGYLLKDCASAELVQAVRQVACG 121 Query: 120 YCYFPFSLNRFV------GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 Y + V S Q L+ +E V++ I +G + + A ++ I+ K Sbjct: 122 EMYVCHGIIGVVVHDYVTRLPESLTQPEVPLTPREREVLQLIAEGNNAKNAAYQLNINVK 181 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TV T++ ++M+KL+ +S+ +L +A R + Sbjct: 182 TVDTHRQQIMKKLKMRSVAELTKYAIREGL 211 >UniRef50_C9LUT0 DNA-binding response regulator UhpA n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LUT0_9FIRM Length = 216 Score = 255 bits (653), Expect = 6e-67, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 108/205 (52%), Gaps = 2/205 (0%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH + + LL + D ++AE ++G A+++ DI ++D+ +P + Sbjct: 8 LRILLADDHRVLRKGLSLLLSSEEDFSVVAEASDGEEALEKAAKTPVDIALLDLSMPHMG 67 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ L L+ Q + ++I++ ++ Y C AGANG++ K + A+ G Sbjct: 68 GLECLRRLKAMQPAVRVLILTMHSERQYVCECLRAGANGYLCKDTLDAELFRALRTVAAG 127 Query: 120 YCYFPFSLNR-FVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTY 178 Y + + ++ +LS +E V+ I+ G + IA+K+++S KTVSTY Sbjct: 128 GRYLGEREAELLIDGALEEPEEPAALSTREREVLELIVHGYSLSTIADKLYLSIKTVSTY 187 Query: 179 KSRLMEKLECKSLMDLYTFAQRNKI 203 K+RL++KL+C +L +A R+ I Sbjct: 188 KTRLLQKLDCTQNSELVDYALRHNI 212 >UniRef50_A0L9F1 Two component transcriptional regulator, LuxR family n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L9F1_MAGSM Length = 206 Score = 255 bits (653), Expect = 6e-67, Method: Composition-based stats. Identities = 58/204 (28%), Positives = 106/204 (51%), Gaps = 1/204 (0%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + I+ DDH + + +LL + ++EI+ E G A+Q + L PD+ ++D+ +PG+N Sbjct: 2 IRIIMADDHTIFRQGLAHLLSAHQELEIVGEAGRGDDALQLIRDLNPDVALLDISMPGLN 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ V++ + + + +++++ +D AGA G+V K + ++ AI A G Sbjct: 62 GLDVVKRVVEEKRPTRLLLLTMHDDPTLAIKAEQAGALGYVVKDNAFSELLDAILAVAAG 121 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 + + V L LS +E V+R + DG+ N +IA + IS KTV T++ Sbjct: 122 KRFVSEVVAEKVNELERLDDLPVQLSPREKEVVRLVADGQTNKEIARSLGISPKTVDTHR 181 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 +RLM KL + D+ +A R + Sbjct: 182 TRLMRKLNLHTTADVVRYAMRMGL 205 >UniRef50_A5G586 Two component transcriptional regulator, LuxR family n=8 Tax=Bacteria RepID=A5G586_GEOUR Length = 226 Score = 255 bits (653), Expect = 7e-67, Method: Composition-based stats. Identities = 52/210 (24%), Positives = 103/210 (49%), Gaps = 7/210 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH + ++ +L ++ IE++AE G A+++ + L PD+V++D+ +P +N Sbjct: 13 IRVLLVDDHKIMRKGLKAILALEHTIEVVAEAANGREAIRKADELLPDVVVMDLTMPEMN 72 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ + + +++S D AGA G++ K + ++ AI +G Sbjct: 73 GIEAIRQIVAAHPDVRTLVLSMVLDRACVMETFKAGATGYLLKDCAVEELVGAIHTVASG 132 Query: 120 YCYFPFSLNRFV------GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 Y + V G+ + LSK+E V++ I +G +IA +S K Sbjct: 133 EPYLCPQITSLVIRDYTKGADANSSDSCVQLSKREREVLQLIANGNSTKEIAFTFGVSIK 192 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TV+ + +M+KL ++ DL +A R + Sbjct: 193 TVAVQRMSVMKKLNLFNVADLTKYAVREGL 222 >UniRef50_Q3Z7M1 DNA-binding response regulator, LuxR family n=7 Tax=Bacteria RepID=Q3Z7M1_DEHE1 Length = 232 Score = 255 bits (653), Expect = 7e-67, Method: Composition-based stats. Identities = 52/211 (24%), Positives = 107/211 (50%), Gaps = 8/211 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 ++ ++ DDH + ++ LL + D E++ E ++G AV VE+L+P +++ D+ + G++ Sbjct: 2 ISIVLADDHQIVRHGLKALLEAEADFEVVGEASDGIEAVNLVESLQPGVLVTDLMMGGMS 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+V + KR ++I+S + Y AGA +V K ++ ++ A G Sbjct: 62 GIEVTYQVVKRSPKTAVVILSMYGNEAYVHEALRAGARAYVLKDSTSEELVRSVREAVQG 121 Query: 120 YCYFPFSLNRFV-------GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 + Y L+ + + ++L+ +E V+ + G +IAE++FIS Sbjct: 122 HRYLSSPLSEKAIEAYMEKSAEATSLDPYETLTIREREVLHLVAQGHTCAEIAERLFISP 181 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 +TV +++ +M KL+ ++ L +A + I Sbjct: 182 RTVEVHRANMMRKLDLRNQTQLLRYALQRGI 212 >UniRef50_Q11VH7 Response regulator n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11VH7_CYTH3 Length = 220 Score = 255 bits (652), Expect = 9e-67, Method: Composition-based stats. Identities = 60/216 (27%), Positives = 116/216 (53%), Gaps = 13/216 (6%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 +N +++DDH + I+ L + + I+ E G ++ V+ LKPD+VI+D+ +P ++ Sbjct: 4 INILLVDDHTIVRDGIKATLKDQKNFHIVGEAANGLDGIEAVKQLKPDVVIMDITMPEMS 63 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ + + K+ ++I+S ++ Y +AGA G++ K + I AI A NG Sbjct: 64 GIEAADVISKKYPDSKVLILSMHDNETYILKSVEAGAYGYLLKDVDKDEFIKAITAVYNG 123 Query: 120 YCYFPFSLNRFVGS------------LTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEK 167 YF +++ + S + L+K+E +++ I DGK+N +IA+ Sbjct: 124 DKYFNTAISSVLVSGYLSKVKQTDSIQSGYSNDEYELTKREKGILKMITDGKNNREIADG 183 Query: 168 MFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 + IS +T+ T+++ +M+KL+ K+ ++L A KI Sbjct: 184 LGISIRTIETHRANIMKKLKVKNAVELVRIAIDEKI 219 >UniRef50_B9XL75 Two component transcriptional regulator, LuxR family n=1 Tax=bacterium Ellin514 RepID=B9XL75_9BACT Length = 234 Score = 255 bits (652), Expect = 9e-67, Method: Composition-based stats. Identities = 52/211 (24%), Positives = 108/211 (51%), Gaps = 8/211 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDHP+ + + L IEI+ E +G V +V L P+IV++D+D+P ++ Sbjct: 19 IKVLLADDHPVVRKGLGSCLNNLEHIEIVGEAVDGQETVSKVRELSPEIVLMDLDMPTMS 78 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + +R+ ++I+S + Y +GA G+V K + ++ AIE+ G Sbjct: 79 GLEATKIIRREFPLVKVLILSIHTNKDYVLQIIKSGAQGYVLKDAPLTELVRAIESVHGG 138 Query: 120 YCYFPFSLNRFV-------GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 +F +++ + + + L+ +E V+ I +G+ N ++A +M + Sbjct: 139 GAFFSPDISQIMLDQYLAEATNGEESGNSKKLTNRETEVLSMIAEGQSNKEMASRMGVGV 198 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 +TV T++ R+M KL+ ++ L +A + I Sbjct: 199 RTVETHRERVMNKLDIHNVAGLTKYAIAHGI 229 >UniRef50_A9B5L0 Two component transcriptional regulator, LuxR family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B5L0_HERA2 Length = 207 Score = 254 bits (650), Expect = 2e-66, Method: Composition-based stats. Identities = 47/204 (23%), Positives = 101/204 (49%), Gaps = 1/204 (0%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDHP+ + +L + D E + + +G AV +E +PD+V++D+ +P ++ Sbjct: 2 IRVLVVDDHPVVRHGLMAMLGWEQDFEPVGDAADGQQAVNLIEQQQPDVVLLDLRLPQLS 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+V+ R + ++++ + Y +AGA G++ K + AI + G Sbjct: 62 GIEVMRHTRASAPNTRFLVLTTYDTDEYIGPALNAGAAGYLLKDASPEEVFRAIRSIYEG 121 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 + V + + D LS++E+ V++ ++ G+ N IA + IS T+ ++ Sbjct: 122 GAALQSGIAARVLKRLATEPAEDELSQRELDVLQLLVRGESNKAIALSLNISENTIKSHV 181 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 S + KL+ +S + A + + Sbjct: 182 SHIFSKLDVRSRAEAVAVALQRGL 205 >UniRef50_A7HA46 Two component transcriptional regulator, LuxR family n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HA46_ANADF Length = 212 Score = 254 bits (650), Expect = 2e-66, Method: Composition-based stats. Identities = 58/209 (27%), Positives = 109/209 (52%), Gaps = 9/209 (4%) Query: 4 IIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 ++ DDH + +R L+ + E + G AV+ + L+PD+V++DV +P +NG++ Sbjct: 1 MVADDHEVVRRGVRALVESHPGWTVCGEASNGREAVRLAQELRPDVVVLDVTMPELNGLE 60 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 +R II+++ + DAGA G+V K++ +++ AI+A Y Sbjct: 61 ATREIRASVPDTEIILLTVHDSDQLLGQALDAGARGYVLKEDAARHLVDAIDALSKHAPY 120 Query: 123 FPFSLNRFVGSLTSDQQ--------KLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 P G+ + ++ ++ SL+++E V+R + G N ++A ++ IS KT Sbjct: 121 VPSRAAERPGNAAAQERNTVVSRGGRVTSLTQREREVLRLLAQGDSNREVAGQLSISAKT 180 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 V T+++ +M KL S++DL +A RN I Sbjct: 181 VETHRANVMRKLGASSIVDLVHYAIRNGI 209 >UniRef50_Q67QY5 Two-component response regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67QY5_SYMTH Length = 218 Score = 254 bits (650), Expect = 2e-66, Method: Composition-based stats. Identities = 51/211 (24%), Positives = 107/211 (50%), Gaps = 7/211 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 M +I+DDH + + ++L D+E++ E + G A++ V LKPD+V++D+++P ++G Sbjct: 1 MKVLIVDDHLMLRKGVLSVLSNTDLEVIGEASNGQEALELVPKLKPDLVLMDINMPVLDG 60 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 ++ L++ ++I++ AGA+G++ K G +++++ AA +G Sbjct: 61 VEATRKLKQMYPDLKVVILTVSEIDKDLFEAIKAGADGYLLKNLGPEELVSSLRAAISGE 120 Query: 121 CYFPFSLN-------RFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 + R + T+ +Q LS +EI V+R G +IA K++++ Sbjct: 121 APISSVMAAKMLKEFRQPRANTTGKQPGQQLSPREIEVLRLASTGLTYKEIAAKLYVAES 180 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQRNKIG 204 TV + ++EKL ++ + +A R + Sbjct: 181 TVKNHMRHILEKLHLRNRSEAVGYAIRTGLA 211 >UniRef50_Q1H354 Two component transcriptional regulator, LuxR family n=4 Tax=Proteobacteria RepID=Q1H354_METFK Length = 213 Score = 253 bits (649), Expect = 2e-66, Method: Composition-based stats. Identities = 54/206 (26%), Positives = 104/206 (50%), Gaps = 3/206 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH + + +R LL +ND +E++AE G A Q PD++++D+ +PG+ Sbjct: 5 IRIMLVDDHEVVRSGLRRLLEQNDGVEVIAEADSGEQAYQFYGEHMPDVIVMDMSMPGMG 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ L + R +II S + + AGA +V+K ++++ A+ G Sbjct: 65 GLEALRRIIARYPQARVIIFSMHENAAFASQALGAGARAYVAKSGAADDLVQAVREVAQG 124 Query: 120 YCYFPFSLNRFVG--SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 Y + + + +L+ LS +E V R + GK +I+ + IS KTV+ Sbjct: 125 KGYLSPGIAQQIALQTLSGSDDPTRLLSAREFEVFRLLAAGKGVEEISTILKISQKTVAN 184 Query: 178 YKSRLMEKLECKSLMDLYTFAQRNKI 203 Y++ L +KL S ++L A ++ + Sbjct: 185 YQTLLKQKLGITSPIELVRLAIKHGV 210 >UniRef50_D1AEE5 Two component transcriptional regulator, LuxR family n=37 Tax=Bacteria RepID=D1AEE5_THECD Length = 244 Score = 253 bits (649), Expect = 2e-66, Method: Composition-based stats. Identities = 48/213 (22%), Positives = 103/213 (48%), Gaps = 11/213 (5%) Query: 2 NAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVET-----LKPDIVIIDVDI 55 ++ DDH L +R +L + D+ ++ E +G A+++V + D+ ++DV + Sbjct: 29 RILLADDHALVRRGVRLILDGEPDLWVVGEAGDGAEAIEQVRRRAGTPQEVDLAVLDVAM 88 Query: 56 PGVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEA 115 P + G+Q L + I+I++ ++ Y AGA G+V K +++ A A Sbjct: 89 PRMTGLQAARELSRMYPRLRILILTMHDNEQYLFEALKAGAAGYVLKSLADRDLVQACRA 148 Query: 116 AKNGYCYF-----PFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFI 170 A G + + ++ ++ L+ +E +++ + +G + +IA+ +FI Sbjct: 149 AVRGEPFLYPGAISVLIRSYLEQARQGEEPETPLTPREEEILKLVAEGHSSREIADTLFI 208 Query: 171 SNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 S KTV +++ ++ KL K ++L +A R + Sbjct: 209 SVKTVERHRANILAKLGMKDRLELTRYAIRTGL 241 >UniRef50_B1KE04 Two component transcriptional regulator, LuxR family n=2 Tax=Alteromonadales RepID=B1KE04_SHEWM Length = 206 Score = 253 bits (649), Expect = 2e-66, Method: Composition-based stats. Identities = 50/204 (24%), Positives = 103/204 (50%), Gaps = 1/204 (0%) Query: 1 MNAIIIDDHPLAIAAI-RNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 M I+DDHP+ + L + +D I+ + G A++++ L PDIV++D+ +P +N Sbjct: 1 MRIFIVDDHPIFREGLIARLSMDDDFVIVGQAANGKEALEKMPNLMPDIVLMDISMPEMN 60 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ E + + I+I+S +D Y + G G+ K + A+ NG Sbjct: 61 GMDAAEIFKDKFPEIKILILSMHDDKEYVLSVLNRGVRGYALKDISAAEMFYALRVIHNG 120 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 Y+ +++ + + + K L+ +E +V+R + G +N ++A ++ IS +T+ T++ Sbjct: 121 GIYYSRAISDLLVQSSQEPDKNTVLTTREQTVLRLLASGLNNKELARELDISVRTIETHR 180 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 + +KL K+ L +A + + Sbjct: 181 RNIKDKLAIKTSAGLVRYAIDHGL 204 >UniRef50_B9L1R6 Response regulator uvrY n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L1R6_THERP Length = 221 Score = 253 bits (647), Expect = 3e-66, Method: Composition-based stats. Identities = 57/211 (27%), Positives = 100/211 (47%), Gaps = 9/211 (4%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDHP+ +R LL + DI ++ E AV+ TL+PD+ ++D+ +PG N Sbjct: 6 IRVLLADDHPIVRVGLRALLEAEPDIAVVGEAGTADEAVELARTLQPDVAVLDISMPG-N 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ L + +I++ + Y AG +G+V K +++ AI G Sbjct: 65 GLEALRRIASLGLPTRTLILTVHAEERYLLPVLQAGGSGYVRKSSLHTDLVEAIRLVARG 124 Query: 120 YCYFPFSLNRFV-------GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 + + R + Q LS++E V+R G +IA+++F+S Sbjct: 125 EVFIDQAAARTLLQGYLDHARTGEVQDPAQLLSEREREVLRLTAAGYTAQEIADQLFLSP 184 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 KTV TY+ R+M+KL +L FA R + Sbjct: 185 KTVETYRHRVMQKLGFSRRSELVRFALRIGL 215 >UniRef50_D0LYS4 Two component transcriptional regulator, LuxR family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LYS4_HALO1 Length = 212 Score = 253 bits (647), Expect = 4e-66, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 110/207 (53%), Gaps = 5/207 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + I DDH L +R +L +++ IE++ E + G AV+ V+ PD++++D+ +P + Sbjct: 2 IKIAIADDHALLREGMRRMLSQSELIEVVGEASNGAEAVEVVKEKAPDVLLLDITMPVKD 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ + + I+I+S D Y AGANGF+SK + ++ AI G Sbjct: 62 GIEATADILALNVNTKILILSMHADEQYALRTLRAGANGFISKGARLEELLKAITDVHEG 121 Query: 120 YCYFPFSLNRFVGSLT----SDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 Y P + +++ +++LSK+E VM ++ G N +IA + IS KTV Sbjct: 122 QRYLPDKIATSFAERHIRPDAEKPLVETLSKREFQVMTHLAQGMTNREIAGVLQISVKTV 181 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNK 202 T++S +++KLE ++ D+ FA ++ Sbjct: 182 DTHRSHVLKKLELRNNSDITRFAIQHG 208 >UniRef50_Q313W8 Two component transcriptional regulator, LuxR family n=3 Tax=Proteobacteria RepID=Q313W8_DESDG Length = 223 Score = 252 bits (646), Expect = 4e-66, Method: Composition-based stats. Identities = 53/210 (25%), Positives = 102/210 (48%), Gaps = 8/210 (3%) Query: 2 NAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 + II +DH L +++LL + + E ++G AV + +P++V++D+ +P ++G Sbjct: 6 SLIIAEDHTLLREGLKSLLQSVPHLIVTGEASDGQMAVDLCDRNQPELVLMDISMPRMDG 65 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 +Q ++KR +++++ Y AGA+G+V K + I A+E+ G Sbjct: 66 VQATRLIKKRHPEVRVLVLTVHGAGEYVYAALAAGADGYVLKDASNDEFILAVESVLGGK 125 Query: 121 CYFPFSLNRFV-------GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 Y ++ V S ++L+ +E + + + +G N +IAE + +S K Sbjct: 126 IYLSPGVSDAVVKGYLNDARGQSVSSSWETLTPREQEIFQLVAEGYKNREIAEMLVVSVK 185 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TV ++S LM+KL S +L A I Sbjct: 186 TVEKHRSNLMQKLGVHSAAELRALALERGI 215 >UniRef50_C4ZNU7 Two component transcriptional regulator, LuxR family n=1 Tax=Thauera sp. MZ1T RepID=C4ZNU7_THASP Length = 220 Score = 252 bits (645), Expect = 5e-66, Method: Composition-based stats. Identities = 52/208 (25%), Positives = 101/208 (48%), Gaps = 5/208 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH + A+R LL + ++E++AE G + + D+V +D+ +PG++ Sbjct: 3 LRILLADDHQMFRHALRALLARDPELEVVAEAASGEEVLAIADAQPVDLVCMDIAMPGMD 62 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ L R + +I +SA D + AGA G+++K E + ++ AI G Sbjct: 63 GIEATRRLLARHPALRVIGLSAFADRQFVTDLLAAGARGYITKGEAGDELLRAIRTVCEG 122 Query: 120 YCYFPFSLNRFVGSLTSDQQKL----DSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 Y + V D + L+ +E V++ I +G + I +++ I+ TV Sbjct: 123 RSYLCPEVAATVADALRDSPGVYAAAPRLTARERQVLQLIAEGLTSVQIGDRLHIAASTV 182 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKI 203 ++ LM KL+ ++ +L +A + I Sbjct: 183 EVHRRNLMRKLDLHNVAELTRYAIHSGI 210 >UniRef50_B1M5J4 Two component transcriptional regulator, LuxR family n=7 Tax=Bacteria RepID=B1M5J4_METRJ Length = 222 Score = 252 bits (645), Expect = 6e-66, Method: Composition-based stats. Identities = 56/210 (26%), Positives = 107/210 (50%), Gaps = 8/210 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + + DDHP+ +A IR LL +IE++ E T G A+ + PD+ ++DV +PG+N Sbjct: 5 IRVALADDHPIVLAGIRTLLNADPEIELVGEATSGSEALPMIHAADPDVAVVDVSMPGLN 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+++ E + +++++ D Y + AGA G++ K+ +++ A+ A G Sbjct: 65 GLELTERVAGSCPRTRVLVLTVHEDAAYVQPLLKAGARGYLLKRSAAEDLLRAVRAVAAG 124 Query: 120 YCYFPFSLNRFVGSLTS-------DQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 Y S+ + + + ++LS +E V+R I G N +IA + +S Sbjct: 125 GIYLDPSVASHAMAHPATPTQGGDTEPSAEALSPRETDVLRLIAQGFSNKEIARRFDLSV 184 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNK 202 K++ TYK+R EKL ++ ++ +A + Sbjct: 185 KSIETYKARAAEKLGLRTRAEIIRYAAAHG 214 >UniRef50_C7MN84 Response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein n=2 Tax=Coriobacteriaceae RepID=C7MN84_CRYCD Length = 215 Score = 252 bits (645), Expect = 6e-66, Method: Composition-based stats. Identities = 51/211 (24%), Positives = 97/211 (45%), Gaps = 8/211 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIP-GV 58 ++ I DDH + ++ D+ ++ E +G A V ++P ++++D+ +P G Sbjct: 2 IDVAIADDHAVVRQGFAFIINSQCDMRVVGEAADGKEAYDLVARVEPHVLLLDISMPPGE 61 Query: 59 NGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKN 118 NG+ E + S III++ + Y + GA G+V K ++ AI Sbjct: 62 NGLIACERISCDFPSTRIIILTMFEETDYLFYTLRGGAAGYVLKNSSTEVLLGAIRKVAT 121 Query: 119 GYCYFPFSLNRFVG------SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 G Y ++ + + S +++ LS +E + + G N + A+K+FIS Sbjct: 122 GETYIEPNMAQALSGKLHGQSGVAEKNPYHELSSREFEIFSLLAQGYTNKEAADKLFISV 181 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 KTV T++S++ KL S +L A + + Sbjct: 182 KTVETHRSKIYAKLGVNSRAELVHLALKYHL 212 >UniRef50_B0MVU6 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MVU6_9BACT Length = 216 Score = 252 bits (644), Expect = 8e-66, Method: Composition-based stats. Identities = 58/208 (27%), Positives = 104/208 (50%), Gaps = 6/208 (2%) Query: 2 NAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 I++DDH L + +R LL + + I ++ E + G + + + D+V +D +PG+NG Sbjct: 5 RIILVDDHSLFRSGMRGLLDRYDGIRVVGEASTGEEFLAMLPATEADVVFMDFAMPGMNG 64 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 + E + +I +S D Y AGA GF+ K M+ ++ AIE G Sbjct: 65 AETTEKALALEPGLKVITLSMFGDENYYSRMVQAGAKGFLMKDSPMDEVLRAIETVAAGG 124 Query: 121 CYFPFSLNRFVGSLTSD-----QQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 YF + R + S + + LS +EI ++ + G N +IA+++FIS +TV Sbjct: 125 TYFCEEVLRSLASRMQTAVSGYEGSDERLSTREIEILVCVCRGLSNQEIADELFISKRTV 184 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKI 203 +++ ++EK CK+ L +A R+ + Sbjct: 185 DKHRANILEKTGCKNTASLVVYAVRHGL 212 >UniRef50_B2A6W2 Two component transcriptional regulator, LuxR family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A6W2_NATTJ Length = 215 Score = 251 bits (643), Expect = 1e-65, Method: Composition-based stats. Identities = 55/210 (26%), Positives = 108/210 (51%), Gaps = 8/210 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 ++ +++DDH + + LL ++D+E+ ++ A+ + PD+V++D+ +P Sbjct: 3 ISVLVVDDHAVLGKGLSMLLNSQDDMEVCGQVGTAKEALDTCKEKCPDVVLLDLSLPDKQ 62 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G ++++ L++ S ++ ++ D Y K +AG +G++ KK + +I+AI + G Sbjct: 63 GHEIIKELKESC-SARVLALTMHEDEAYFKRVVEAGGDGYILKKAADDELISAIRSVYQG 121 Query: 120 YCYFPFSLNRFVGSLTSDQQKLD------SLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 + + + + K LS +E V++ I G N +IAEK++IS K Sbjct: 122 EVIVDKTFTKLLIDYYRNPDKQSGTEKNYDLSDREKEVLQLIALGYTNKEIAEKLYISIK 181 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TV T+ +R+ EKL +L +A RN I Sbjct: 182 TVETHIARIKEKLGLNRRSELVRYAMRNNI 211 >UniRef50_D1Y661 DNA-binding response regulator, LuxR family n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y661_9BACT Length = 216 Score = 251 bits (642), Expect = 1e-65, Method: Composition-based stats. Identities = 58/209 (27%), Positives = 108/209 (51%), Gaps = 7/209 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH + + +R LL K D IE+ +G AV E L+PD+ ++D+ +P +N Sbjct: 3 IRVLLADDHEMFLEGLRELLGKADGIELAGLARDGAEAVAAAERLQPDVALMDMTMPRLN 62 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GIQ + + ++++S D AGA G+V K+ + AI+ NG Sbjct: 63 GIQATQKIAAGSPGTKVLVLSMHGDKNLIVESLKAGARGYVLKECSSQELCLAIQTVANG 122 Query: 120 YCYFPFS-----LNRFVGSLTSDQQKLD-SLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 Y + + ++ +++Q D LS++E+ V++ ++ G + IAE++ IS Sbjct: 123 QYYLTPAILSTLIGDYLRLTENEEQGSDCPLSERELDVLKLLVKGCNAKQIAEQLSISKN 182 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQRNK 202 TV T++ +++KL C S+ +L +A R Sbjct: 183 TVDTHRRHILDKLGCNSMAELTRYAIREG 211 >UniRef50_B4D6Y1 Two component transcriptional regulator, LuxR family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6Y1_9BACT Length = 220 Score = 251 bits (642), Expect = 1e-65, Method: Composition-based stats. Identities = 55/210 (26%), Positives = 107/210 (50%), Gaps = 8/210 (3%) Query: 2 NAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 ++ DDH + +R LL ++D EI AE ++G +AVQ E L PDIVI+D+ +P +NG Sbjct: 8 RILLADDHDIVRRGLRTLLELRSDWEICAEASDGRAAVQFAEDLAPDIVILDLSMPELNG 67 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 ++ + +++++ + + AG G++ K + ++ A++A G Sbjct: 68 LEAARRIAAHCPRSRMLMLTMHETEQFVREALAAGVRGYILKTDAGRDLANAVDALIRGE 127 Query: 121 CYFPFSLNRFVGS-------LTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 +F L + + + L+ +E +++ + +G+ N D+ + + IS K Sbjct: 128 TFFASRLAATIYAAEFAGMGRRRRSKSQAGLTPREREILQLLAEGRKNRDVGKALNISVK 187 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 T T+++R+M KL S+ DL +A RN + Sbjct: 188 TAETHRARIMAKLGIDSVADLVRYAIRNGL 217 >UniRef50_A1ASJ5 Two component transcriptional regulator, LuxR family n=2 Tax=Desulfuromonadales RepID=A1ASJ5_PELPD Length = 208 Score = 251 bits (642), Expect = 1e-65, Method: Composition-based stats. Identities = 57/203 (28%), Positives = 110/203 (54%), Gaps = 1/203 (0%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 + +I DDH + + +L + + + E +G A+ + E L+PD+V++D+ +P +NG Sbjct: 3 VRILIADDHAIVREGLTMILESSGMIVAGEARDGRDALSQTEVLRPDVVVMDIAMPELNG 62 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 I + R +I++S N + AGA ++ K+ + ++ A+ A G Sbjct: 63 IDATRMIHGRLPEVKVIVLSMHNTREHVFRAMQAGARAYLLKESAGSGLVDAVRAVIRGE 122 Query: 121 CYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKS 180 CYF ++ ++ + LDSLS +E V++ +++G+ + +IAE + +S K++ TY+S Sbjct: 123 CYFGEGVD-APQAVAGFKSPLDSLSLREREVIQLVVEGRTSAEIAELLSLSPKSIETYRS 181 Query: 181 RLMEKLECKSLMDLYTFAQRNKI 203 RLM KL ++ L FA ++ I Sbjct: 182 RLMVKLGVGNIPALVKFALQHGI 204 >UniRef50_Q15T22 Two component transcriptional regulator, LuxR family n=4 Tax=Alteromonadales RepID=Q15T22_PSEA6 Length = 214 Score = 251 bits (642), Expect = 1e-65, Method: Composition-based stats. Identities = 53/207 (25%), Positives = 102/207 (49%), Gaps = 4/207 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH L IR +L ++ E T G AV+ PD+V++D+ +PG+ Sbjct: 2 IKILLVDDHELVRTGIRRILEDVQGFVVVGEATTGEEAVKFCRKNAPDLVLMDMSMPGIG 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + + + + +I++S ++ GA G+++K + AI G Sbjct: 62 GLEATKQILRFSENTRVIVLSVHKENPIPAKVMRMGAFGYLTKDSDPKEMELAIRKVAAG 121 Query: 120 YCYFPFSLNRFVGSLT---SDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 Y + + + SD +SLS++E+ + + G DIA+ + IS KTV+ Sbjct: 122 QKYVSPDIAQQIAIGALDFSDGNPFESLSERELEITLMLTKGSKVPDIAKFLNISAKTVN 181 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKI 203 T++ R+ EKL + ++L A R+K+ Sbjct: 182 THRYRMFEKLNVSTDVELTHLALRHKL 208 >UniRef50_C6J7D2 Response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J7D2_9BACL Length = 227 Score = 251 bits (642), Expect = 1e-65, Method: Composition-based stats. Identities = 56/210 (26%), Positives = 104/210 (49%), Gaps = 8/210 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRV----ETLKPDIVIIDVDI 55 + +I+DDH + ++ L++ E++AE +G AV+ + +PDI+++D+ + Sbjct: 13 IKVMIVDDHDMVRMGLKTYLMQDPGFEVIAEAGDGREAVELLERGLREGQPDIILMDLMM 72 Query: 56 PGVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEA 115 PG+NG + + +R R I+I+++ + +AGA +V K +I A++ Sbjct: 73 PGMNGAEATKEVRSRFPDMKIVILTSFLEDDLVVQAVEAGAVSYVLKTVSAEELIYALQG 132 Query: 116 AKNGYCYFPFSLNRFVGSLTSD---QQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 A G + + + Q ++++E V+ I +GK N DIAE++ IS Sbjct: 133 AYRGMPVMTGEVAQALTRGLRQRTVQGDDSGMTEREKEVLLLIAEGKSNKDIAEELHISI 192 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNK 202 KTV T+ S L+ K E + L +A R Sbjct: 193 KTVKTHVSNLLMKCELEDRTQLAIYAHRQG 222 >UniRef50_Q51373 Response regulator gacA n=50 Tax=Gammaproteobacteria RepID=GACA_PSEAE Length = 214 Score = 251 bits (642), Expect = 1e-65, Method: Composition-based stats. Identities = 53/208 (25%), Positives = 103/208 (49%), Gaps = 5/208 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH L I +L ++++ + G ++ LKPD+V++DV +PG+ Sbjct: 2 IKVLVVDDHDLVRTGITRMLADIEGLQVVGQADCGEDCLKLARELKPDVVLMDVKMPGIG 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ L + Q +++V+ + + AGA G+++K G+ ++ AI G Sbjct: 62 GLEATRKLLRSQPDIKVVVVTVCEEDPFPTRLMQAGAAGYMTKGAGLEEMVQAIRQVFAG 121 Query: 120 YCYFPFSLNRFVG----SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 Y + + + DSLS++EI + I + I++K+ +S KTV Sbjct: 122 QRYISPQIAQQLALKSFQPQQHDSPFDSLSEREIQIALMIANCHKVQSISDKLCLSPKTV 181 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKI 203 +TY+ R+ EKL S ++L A R+ + Sbjct: 182 NTYRYRIFEKLSITSDVELALLAVRHGM 209 >UniRef50_C8WS10 Two component transcriptional regulator, LuxR family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WS10_ALIAD Length = 224 Score = 250 bits (641), Expect = 2e-65, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 107/205 (52%), Gaps = 3/205 (1%) Query: 2 NAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIP-GVN 59 +I+DDH L +R +L IE++ E + G A++ +PD++++DV +P G++ Sbjct: 5 RVVIVDDHALVRQGLRLILHGVAGIEVVGECSCGEDALKAAVKDRPDVMLMDVHMPQGLD 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI LR+ +I+++ +D + + DAG +G V K + + I+AAI+ + G Sbjct: 65 GITTARHLRQIAPQVRVIMLTMFDDRVHVEKMLDAGVSGIVFKHDDSSEIVAAIQHGQPG 124 Query: 120 YCYFPFSLNRFVGSLT-SDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTY 178 + Y + + T S + + LS +E V+ + G N ++A+ + IS KTV T+ Sbjct: 125 HPYLSRRWGQRANAETVSPSRTAERLSPRETEVLVLLAQGYTNREVADALHISVKTVETH 184 Query: 179 KSRLMEKLECKSLMDLYTFAQRNKI 203 + +M ++ S L +A +N + Sbjct: 185 RQHIMRRIGLHSRAALVRYAYQNGL 209 >UniRef50_Q04VJ6 Receiver component of a two-component response regulator n=4 Tax=Leptospira RepID=Q04VJ6_LEPBJ Length = 221 Score = 250 bits (641), Expect = 2e-65, Method: Composition-based stats. Identities = 59/213 (27%), Positives = 109/213 (51%), Gaps = 12/213 (5%) Query: 2 NAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGI 61 ++DDH + ++ +L EI E + A+ ++ L PD+VI D+ +PG++GI Sbjct: 7 KIFLVDDHAILREGLKMILSGQ-FEICGESGDAEKALDQIGKLNPDLVITDISMPGLSGI 65 Query: 62 QVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 121 +++ LRK+ + II+S ++ Y + + G NG+V K + N+++ AIEA G Sbjct: 66 DLVKNLRKQYPNIRTIILSRHDNREYVQKLLELGINGYVLKDDAGNDLLRAIEAVHKGET 125 Query: 122 YFPFSLNR-----FVGSLTSDQQKLDS------LSKQEISVMRYILDGKDNNDIAEKMFI 170 Y + FVGS ++ D+ LS +E +++ + +G N I + + I Sbjct: 126 YLSPGITAHFLSGFVGSGKPGEENQDAKKAFSVLSDREREILKLVAEGNSNESIGKILGI 185 Query: 171 SNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 S TV +++ +M+KL + DL +A R + Sbjct: 186 SPATVKVHRANIMKKLNLHKVADLVMYAIRAGL 218 >UniRef50_C0N6H7 Response regulator receiver domain protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N6H7_9GAMM Length = 214 Score = 250 bits (641), Expect = 2e-65, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 104/206 (50%), Gaps = 3/206 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH + + + LL +N DI ++ E G A Q + PD++++D+ +PG+ Sbjct: 5 IRVMLVDDHAVVRSGLCRLLEQNTDISVVGEAESGEQAYQTYPEISPDVLVMDMSMPGMG 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + + R +I+ S + Y AGA G+V+K +++ A+ K+G Sbjct: 65 GLEAVRRILNRWSGAKVIMFSMHENATYAIQSLTAGAMGYVAKSGHAEDLVKAVREVKSG 124 Query: 120 YCYFPFSLNRFVG--SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 + + V SL D L+ +E V R + +GK +DIA ++ I KTV+ Sbjct: 125 KSFLSSDMAHKVALQSLAGDDNPTQRLTSREFEVFRLLAEGKLVDDIASRLNIGQKTVAN 184 Query: 178 YKSRLMEKLECKSLMDLYTFAQRNKI 203 Y++ L +KL S +DL A + + Sbjct: 185 YQTSLKQKLGIHSPVDLVRLAMKYGV 210 >UniRef50_C1F9F6 Two-component response regulator n=2 Tax=Bacteria RepID=C1F9F6_ACIC5 Length = 213 Score = 250 bits (641), Expect = 2e-65, Method: Composition-based stats. Identities = 50/204 (24%), Positives = 97/204 (47%), Gaps = 5/204 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH + + LL E++AE +G A+ +PDI I+D+ +P +N Sbjct: 10 IRILVVDDHHIVRQGLVALLNTLPGFEVIAEAGDGVEAIALHREHQPDITIMDLRLPRMN 69 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + +R+ I++++ + AGA G++ K +++ AAI + G Sbjct: 70 GVEAITRIREESPGARIVVLTTFDGDEDIYRALQAGARGYLLKGMDADDLTAAIRSVHAG 129 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 P + + S + L+ +E+ V+R I+ G+ N +IA + IS TV T+ Sbjct: 130 KSRIPTVVAERLAERMSGSE----LTARELDVLRLIVQGRSNREIAADLHISEATVKTHI 185 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 + L+ KL T A + + Sbjct: 186 NNLLSKLGVSDRTQAATTALQRGL 209 >UniRef50_C6XAP6 Two component transcriptional regulator, LuxR family n=3 Tax=cellular organisms RepID=C6XAP6_METSD Length = 214 Score = 250 bits (640), Expect = 2e-65, Method: Composition-based stats. Identities = 51/206 (24%), Positives = 105/206 (50%), Gaps = 3/206 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH + + + LL ++ I+++AE G A Q PD+ ++D+ +PG+ Sbjct: 6 IRVLLVDDHTVVRSGLCRLLEQHSGIKVVAEAESGEQAYQVFGEYLPDVTVMDLSMPGMG 65 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + + R + ++I S + + +GA G+V+K + ++ A+ G Sbjct: 66 GLEAMRRILARYRTARVLIFSMHENAAFAMQTLKSGARGYVAKTGSFDELVKAVVEVARG 125 Query: 120 YCYFPFSLNRFVGSLT--SDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 Y S+ + + T D + LS +E V R +GK+ +IAE + IS KTV+ Sbjct: 126 KSYISTSIAQKIALQTVIGDGDLISQLSPREFEVFRLFAEGKNAEEIAEVLKISQKTVAN 185 Query: 178 YKSRLMEKLECKSLMDLYTFAQRNKI 203 Y + + +KL + +++ FA ++ + Sbjct: 186 YHTLVKQKLGLSNPVEMVRFAIKHGL 211 >UniRef50_C7QHJ1 Two component transcriptional regulator, LuxR family n=29 Tax=Actinobacteria (class) RepID=C7QHJ1_CATAD Length = 222 Score = 250 bits (640), Expect = 2e-65, Method: Composition-based stats. Identities = 48/209 (22%), Positives = 100/209 (47%), Gaps = 6/209 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I+DDHP+ +R + ++ E++ E ++G A+ R PD+V++D+ +P + Sbjct: 12 LRLLIVDDHPIVRDGLRGVFDGEDGFEVVGEASDGAQALVRAAESGPDVVLMDLRMPTMG 71 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + LR Q + +++++ + +AGA G++ K ++I A+ AA G Sbjct: 72 GVEAIRRLRVEQPAVRVLVLTTYDTESDVLPAIEAGATGYLLKDAPREDLIRAVRAAAAG 131 Query: 120 YCYFPFSLNRFV-----GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 ++ + + L D+L+++E+ V+R + G N + A K+FIS T Sbjct: 132 QPVLAPTVAQRLMTRVQTPLAEPAPPGDALTERELEVLRLVASGTTNRETARKLFISEAT 191 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 V T+ K + A + + Sbjct: 192 VKTHLLHAYAKFGVRDRAAAVAEAYKRGL 220 >UniRef50_A4J6C2 Two component transcriptional regulator, LuxR family n=2 Tax=Clostridia RepID=A4J6C2_DESRM Length = 218 Score = 250 bits (640), Expect = 2e-65, Method: Composition-based stats. Identities = 54/211 (25%), Positives = 101/211 (47%), Gaps = 8/211 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I DDH L +R +L + I ++ E+T G AV DIV++D+++P +N Sbjct: 5 IKLLIADDHILIREGLRKILSIEPHISVVGEVTNGQQAVDYCLKNPVDIVLMDINMPIMN 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ ++K + II ++ + Y G +G+V K + +I I G Sbjct: 65 GIEACRQIKKLNPNIGIIALTIHDQDEYLFELIKYGISGYVLKDIHPDQLIKTILGVAQG 124 Query: 120 YCYFPFSL-NRFVGSLTS------DQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 + P SL R + T ++K +L+++EI V++ + G+ N IA ++IS Sbjct: 125 ESFIPPSLTARVLAEFTRLSSGDYSEKKHLNLTEREIEVLKQVAKGQSNKAIANALYISE 184 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 KTV + + + +K+ +A + K+ Sbjct: 185 KTVKNHLTNIFQKIGVADRTQAALYAIKEKL 215 >UniRef50_Q3JFS6 DNA-binding response regulator, LuxR family n=92 Tax=Burkholderiales RepID=Q3JFS6_BURP1 Length = 282 Score = 250 bits (639), Expect = 3e-65, Method: Composition-based stats. Identities = 49/207 (23%), Positives = 109/207 (52%), Gaps = 4/207 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I DDH L +R++L + E+ E + + + V + ++++D+ +PG N Sbjct: 69 IKVLIADDHALVRDGLRHILQNASGYEVAGEAFDSATTIALVRSTPAQVLVLDLSMPGRN 128 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+++++ +++ + + I++++ + Y AGA+G+++K+ + ++ A+ +G Sbjct: 129 GVELIKQIKEEKPALRILVLTMHAEQQYAVRAFRAGASGYLTKESASSELVGAVTKVASG 188 Query: 120 YCYFPFSLNRFVGSLTSDQQ---KLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 Y ++ ++ LS +E V R I G+ IA+++ +S KTVS Sbjct: 189 GVYVSLAMAERFAQSLNEPAETLPHHRLSDREFDVFRRIASGQTLTQIADELCVSAKTVS 248 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKI 203 TYK+R++EK++ L +A R+K+ Sbjct: 249 TYKTRILEKMQMPHEAALVRYALRHKL 275 >UniRef50_A1WBJ7 Two component transcriptional regulator, LuxR family n=30 Tax=root RepID=A1WBJ7_ACISJ Length = 239 Score = 250 bits (639), Expect = 3e-65, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 109/207 (52%), Gaps = 4/207 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + I+DDH + A +R L ++ D+ ++ E + G A+ V + D++++D+ +PG + Sbjct: 31 IKIGIVDDHAIVRAGLRQFLSEHVDLRVVGEASNGREAIDLVRVHEIDVLVMDLSMPGQS 90 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ L LR + I+I+S + Y + GA+G+++K+ I+ AI G Sbjct: 91 GLDALAMLRAKAPDMGILILSGYPEEHYAINLIRQGASGYLNKECEPKEIVEAIRTIALG 150 Query: 120 YCYFPFSLNRFVGSLTS---DQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 Y S+ + + D + LS++E V + G+ DIA+ + +S KTVS Sbjct: 151 RRYLTPSVADLLAQQLNRKDDAPPHEQLSEREFQVFLKLAKGETAGDIAKSLSLSVKTVS 210 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKI 203 TY++RLMEK+ S DL +A +NK+ Sbjct: 211 TYRTRLMEKMGLSSNSDLTYYALKNKL 237 >UniRef50_C2C4B6 Transcriptional regulator n=1 Tax=Listeria grayi DSM 20601 RepID=C2C4B6_LISGR Length = 214 Score = 249 bits (638), Expect = 3e-65, Method: Composition-based stats. Identities = 57/211 (27%), Positives = 109/211 (51%), Gaps = 8/211 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIP-GV 58 M +I DDH + +A++ ++ + D+E++ + +G A +E+ +PDIV++D+ +P G Sbjct: 1 MKLLIADDHAVVRSALKFMINAQKDMEVIGDAADGTEAFLFIESNRPDIVLMDLSMPPGE 60 Query: 59 NGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKN 118 NG+ + + + +I+++ ++ Y AGA G++ K ++ AI + Sbjct: 61 NGLLTTKRITEAFPETKVILLTMHDEEAYITQALQAGAQGYIMKNSSEELLLDAIRSVMG 120 Query: 119 GYCYFPFSLN------RFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 G N + + + ++ LSK+E ++ I G N +IAE++FIS Sbjct: 121 GQIIIDPVFNYSSKQIEQLKRADASENIIERLSKREKEILPLIALGYGNKEIAERLFISA 180 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 KTV +KS +M+KLE K DL F + ++ Sbjct: 181 KTVEVHKSHIMKKLEMKKFSDLLRFCVKEQL 211 >UniRef50_Q1IXN1 Two component transcriptional regulator, LuxR family n=10 Tax=Bacteria RepID=Q1IXN1_DEIGD Length = 221 Score = 249 bits (638), Expect = 3e-65, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 100/205 (48%), Gaps = 1/205 (0%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH + +R L + IE++ E G A+ E L PD+VI+D+ +P ++ Sbjct: 10 VRVLLVDDHAVVRQGLRLFLSLDSQIEVVGEAANGEEALAAAERLHPDVVIMDLMMPVMD 69 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GIQ LR++ +I +++ + DAGA G++ K + + AI AA G Sbjct: 70 GIQATRLLRRQHPDTEVIALTSTLEEHKVNGAIDAGAMGYMLKDASSDTLADAIHAAARG 129 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 R + + ++L+ +E+ V++ I G N DIA ++ TV T+ Sbjct: 130 EVRLHPEAARRLVRDFRTPEMRETLTPKEVIVLQLIARGYSNRDIARDQGVTEATVKTHV 189 Query: 180 SRLMEKLECKSLMDLYTFAQRNKIG 204 SRL+ KL +S +A R+ + Sbjct: 190 SRLLGKLGLESRTQAALYALRHGLA 214 >UniRef50_C4ZEG3 Two-component response regulator (Extracellular proteinase response regulator) n=3 Tax=Bacteria RepID=C4ZEG3_EUBR3 Length = 214 Score = 249 bits (638), Expect = 4e-65, Method: Composition-based stats. Identities = 66/208 (31%), Positives = 117/208 (56%), Gaps = 5/208 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 +N +I DDH + ++NLL DI+++AE G + +++T +PD++++D+++P +N Sbjct: 3 INIMITDDHSMIREGLKNLLELDGDIKVIAEAENGEDCLDKLKTFRPDVLLLDINMPKMN 62 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++VL+ L+ R+ +++++ N+ Y D G NG+V K + AI +G Sbjct: 63 GLEVLKALKDRKSKVKVLVLTVHNETEYLMKAVDIGINGYVLKDSESAELKKAIFTIADG 122 Query: 120 YCYFPFS----LNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 Y S LN + D+ K+D+L+K+E+ V++ + GK N DIA++M IS +TV Sbjct: 123 ETYIQPSLIPALNSKMIQKNEDELKIDALTKREMEVLKEMAVGKFNRDIAKEMKISERTV 182 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKI 203 + S + +KLE FA RN I Sbjct: 183 KNHISSIFKKLEVTDRTQAAVFAIRNNI 210 >UniRef50_Q024Y7 Two component transcriptional regulator, LuxR family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q024Y7_SOLUE Length = 225 Score = 249 bits (637), Expect = 4e-65, Method: Composition-based stats. Identities = 60/209 (28%), Positives = 105/209 (50%), Gaps = 8/209 (3%) Query: 3 AIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGI 61 +++DDH L +R +L + ++ ++ E G AVQ + PDIV++D+ +PG+NGI Sbjct: 5 IVLVDDHKLVRDGVRMILERGSEFLVVGEAENGADAVQLCKKSSPDIVLMDIGLPGMNGI 64 Query: 62 QVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 121 + L + S +II+S +D +GA FV KK N ++ A+ G Sbjct: 65 EATTELLRHCPSVKVIILSMYDDENSVVSAIRSGARAFVLKKASSNELLDALRTVARGGS 124 Query: 122 YFPFSLNRFVGSL-------TSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 Y ++ + T D+ L+SLS +E+ V+R + +GK + DIA + + +T Sbjct: 125 YLSSQVSDRLLQRIQRGDLETHDRSPLESLSPRELQVLRLVAEGKTSKDIAVLLDLGLQT 184 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 V +Y+ +M+KL ++ L A I Sbjct: 185 VRSYRKTMMKKLGVNNVAGLTQLALAAGI 213 >UniRef50_Q5ZS73 Response regulator GacA n=10 Tax=Gammaproteobacteria RepID=Q5ZS73_LEGPH Length = 225 Score = 249 bits (637), Expect = 5e-65, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 113/207 (54%), Gaps = 4/207 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I+DDH L IR LL +D++++A+ G A+ V+T PD+V++D+ +PG++ Sbjct: 8 IKVLIVDDHALVRMGIRRLLEDMSDVDVVADAESGEQALAYVKTHSPDVVLLDMKMPGID 67 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G +V L+K + +I V+A GA G+++K+ G + AAI G Sbjct: 68 GWEVTRRLKKTNPNIKVIAVTAICSDPLPTRVLQLGAMGYLTKESGAEEMAAAIRKVAKG 127 Query: 120 YCYFPFSLNRFVG---SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 Y + + + S D LS++E+ VM I G + DIA+++F+S+KT++ Sbjct: 128 EKYLSAEIAQKMAINSLQESQDSPFDLLSEREMQVMLMITSGMNVQDIADRLFLSSKTIN 187 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKI 203 Y+ R+ EKL K+ ++L A +++I Sbjct: 188 GYRYRMFEKLGIKNDVELTYLAMKHRI 214 >UniRef50_P54662 Transcriptional regulatory protein degU n=24 Tax=Bacillales RepID=DEGU_BREBE Length = 236 Score = 249 bits (637), Expect = 5e-65, Method: Composition-based stats. Identities = 54/222 (24%), Positives = 109/222 (49%), Gaps = 20/222 (9%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +IIDDH L ++ +L + + E++A+ +G +AV+ VE PD++++D+++P VN Sbjct: 10 IQIVIIDDHQLFREGVKRILAMEPEFEVVADGEDGENAVELVEKYNPDVILMDINMPKVN 69 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ L +R ++++S +D Y H GA+G++ K+ + +I A++ G Sbjct: 70 GVEATRDLIQRYPDVKVLVLSIHDDESYVTHVLKTGASGYLLKEMDADALIEAVKVVAQG 129 Query: 120 YCYFPFSLN--------RFVGSLTSD-----------QQKLDSLSKQEISVMRYILDGKD 160 Y + R V + ++ L L+++E V++ + DG Sbjct: 130 GAYIHPKVTHNLIKEYRRLVNEDEQESSEIGFKEVEYRKPLHILTRRECEVLQLMTDGYS 189 Query: 161 NNDIAEKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNK 202 N I E ++IS KTV + S +++K+ + +N Sbjct: 190 NRMIGEALYISEKTVKNHVSNILQKMNVNDRTQAVVESIKNG 231 >UniRef50_B9XC41 Two component transcriptional regulator, LuxR family n=7 Tax=Verrucomicrobia RepID=B9XC41_9BACT Length = 267 Score = 249 bits (637), Expect = 5e-65, Method: Composition-based stats. Identities = 53/211 (25%), Positives = 107/211 (50%), Gaps = 8/211 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH + +R LL + DI+I+ E G AVQ + L PD++++D+ +P +N Sbjct: 31 IRVLLADDHTVVRQGLRALLSGEKDIQIVGEAGTGREAVQMAQKLTPDVILMDIAMPLMN 90 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + + S ++++S+ + Y + +AGA+G++ K N+++AA+ G Sbjct: 91 GLEATRKIAEVAPSAKVLVLSSYGEDDYVQKLTEAGASGYLIKHAAANDLVAAVRETHKG 150 Query: 120 YCYFPFSLNRFVGSLTSDQ-------QKLDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 +F + + + + L+++E+ + +I+ GK N IA M IS Sbjct: 151 NAFFSPGIAKRLRDQVRAGFANGNGTKASFELTERELETLGHIVAGKPNKVIACDMGISI 210 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 KTV ++ ++M KL + L +A + Sbjct: 211 KTVEKHRQQVMNKLNIHEVASLTRYAIAKGM 241 >UniRef50_Q1GZT3 Two component transcriptional regulator, LuxR family n=10 Tax=Proteobacteria RepID=Q1GZT3_METFK Length = 215 Score = 249 bits (637), Expect = 5e-65, Method: Composition-based stats. Identities = 54/207 (26%), Positives = 105/207 (50%), Gaps = 4/207 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I DDH + ++ +L + DIE++A+ A++ T D+V++D+ +P + Sbjct: 7 IKVVIADDHAILREGLKQILAETEDIEVVADAKNAAEAIKLAGTKGLDVVVLDISLPDRS 66 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ ++K ++++S + Y AGA G++SK+ + ++ AI G Sbjct: 67 GIEACNIIKKEHPGVAVLMLSMHREDAYAIRALRAGAVGYLSKQSASDQLVTAIRTVAKG 126 Query: 120 YCYFPFSLNRFVGSLTS---DQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 Y + + S ++ D+LS +E + I G ++IAE + +S KTVS Sbjct: 127 KKYISAEVALALADQVSGGLEKPIHDTLSNREFQTLTMIASGLSVSEIAENLSLSVKTVS 186 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKI 203 Y++RL+EKL + +L +A +N + Sbjct: 187 MYRARLLEKLNLRHNAELTHYAIKNNL 213 >UniRef50_B9XAQ5 Two component transcriptional regulator, LuxR family n=1 Tax=bacterium Ellin514 RepID=B9XAQ5_9BACT Length = 229 Score = 249 bits (637), Expect = 5e-65, Method: Composition-based stats. Identities = 51/206 (24%), Positives = 103/206 (50%), Gaps = 7/206 (3%) Query: 2 NAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 +++DDHP+ +R ++ D+ + E A++ V++ KPD+V+ D+ +P NG Sbjct: 14 KILLVDDHPMMREGLRQIIGNEIDLAVCGEAENAFQALELVKSEKPDLVLADITLPDKNG 73 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 +++L+ L+ + ++++S ++ Y + AG G++ K EG I+ AI +G Sbjct: 74 LELLKDLQAQHPKLPVLVISMHDEALYAERVLRAGGRGYIMKHEGGKKIMQAIRHVLSGQ 133 Query: 121 CYFPFSLNRFVGSLTSD------QQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 + ++ + L S +++L+ +E V R I +G +IA M +S KT Sbjct: 134 IFVSEKMSARILELFSGHGTQAASSPIENLTDREFEVFRLIGEGLSTKEIAANMHVSAKT 193 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQR 200 V ++ + KL K+ +L + R Sbjct: 194 VEVHRMNIKTKLGLKTAAELIRYTVR 219 >UniRef50_Q1AVR6 Two component transcriptional regulator, LuxR family n=17 Tax=Bacteria RepID=Q1AVR6_RUBXD Length = 220 Score = 249 bits (637), Expect = 5e-65, Method: Composition-based stats. Identities = 54/211 (25%), Positives = 99/211 (46%), Gaps = 9/211 (4%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I++D L +R LL ++ +E++ E +G A++R+ +P++V++DV +P ++ Sbjct: 5 VRVMIVEDQALMREGLRTLLDLEEGVEVVGEAADGVEALERLPGARPEVVLVDVRMPRMD 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GIQ++E L + II++ +D Y AGA G++ K + AAIE G Sbjct: 65 GIQLIERLGREHPEVAAIILTTFDDDEYVFRGLRAGARGYILKDTPSEELAAAIEKVHRG 124 Query: 120 YCYFP--------FSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFIS 171 L R Q LS++E+ V+R + G N +IA ++I+ Sbjct: 125 EAVLDGPITLKVISELGRLSKGPAGPQPGSGGLSEREMEVLRLVASGASNREIARALYIT 184 Query: 172 NKTVSTYKSRLMEKLECKSLMDLYTFAQRNK 202 TV + S ++ KL + +A Sbjct: 185 EGTVKNHISSILRKLGFRDRTQAALYALERG 215 >UniRef50_A4VZN8 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=52 Tax=Bacilli RepID=A4VZN8_STRS2 Length = 213 Score = 248 bits (636), Expect = 6e-65, Method: Composition-based stats. Identities = 51/204 (25%), Positives = 103/204 (50%), Gaps = 1/204 (0%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH + +++ L ++ D+E++AE ++G + + +KPD+V++D+ +P + Sbjct: 4 IRVMLVDDHEMVRLGLKSYLNLQPDVEVVAEASDGEEGLAKALEVKPDVVVMDLVMPKMT 63 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ L K I+I+++ D+ +AGA G++ K + I+AAI G Sbjct: 64 GVEATLALLKEWPQAQIVILTSYLDNEKIYPVLEAGARGYMLKTSSADEILAAIRKVALG 123 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 + + V D L+ +E ++ + G DN IA++ FIS KTV T+ Sbjct: 124 EYAIETEVEKKVEHHKRHPDLHDDLTAREREILTLLAKGYDNQRIADESFISLKTVKTHV 183 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 S ++ KL +A ++ + Sbjct: 184 SNILSKLAVSDRTQAVVYAFQHGL 207 >UniRef50_UPI0001C314AF two component transcriptional regulator, LuxR family n=2 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C314AF Length = 228 Score = 248 bits (636), Expect = 6e-65, Method: Composition-based stats. Identities = 47/204 (23%), Positives = 106/204 (51%), Gaps = 1/204 (0%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I DDH + + +R +L + DI ++AE + SA + V P ++++D+++PG Sbjct: 14 IRVVIADDHRVVRSGLRMVLDAEPDIAVVAEAGDVPSAERAVRAHHPHVLVLDLNMPGEQ 73 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 + + L +++++ + D + + +GA G+V K+ + ++ A+ A+ G Sbjct: 74 SLPAIPRLVAELPETAVVVLTMQQDPAFAREALRSGARGYVLKEAADDELVQAVRLAREG 133 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 Y L + + D L+ +E+ V+R I G N +IA+++F+S +TV +++ Sbjct: 134 RTYLNPELGARMAAEPPPSGPPDDLTARELEVLRLIALGHTNAEIAQQLFLSIRTVESHR 193 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 + + +K+ S +L +A + + Sbjct: 194 AHIQQKVRRSSRAELVRYALDHGL 217 >UniRef50_C7MUJ2 Response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein n=101 Tax=Bacteria RepID=C7MUJ2_SACVD Length = 239 Score = 248 bits (636), Expect = 6e-65, Method: Composition-based stats. Identities = 52/213 (24%), Positives = 98/213 (46%), Gaps = 10/213 (4%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DD L A R +L +D IE++ E +G AV+ + D+V++DV +P ++ Sbjct: 21 LRVVLADDQDLVRAGFRVILSSDDGIEVVGEAGDGWEAVEVATRERADVVLMDVQMPKLD 80 Query: 60 GIQVLETLRK---RQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAA 116 G++ L + +II++ + Y AGA+GF+ K ++I ++ Sbjct: 81 GLEATRRLLGPAGADHPTKVIILTTFDREDYLFEALRAGASGFLLKNASPEDLIESVRIV 140 Query: 117 KNGYCYFPFSLNRFV------GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFI 170 G + R V ++T ++ L+ +E V+ + G N +IA ++ + Sbjct: 141 ARGDALLSPEVTRRVIARFSAPAVTGPTRRPSELTDREFEVLSLLAKGASNAEIARQLVL 200 Query: 171 SNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TV T+ SR++ KL + FA N I Sbjct: 201 GETTVKTHVSRILTKLNLRDRTHAVVFAYENGI 233 >UniRef50_D1C1C8 Two component transcriptional regulator, LuxR family n=3 Tax=Bacteria RepID=D1C1C8_SPHTD Length = 237 Score = 248 bits (636), Expect = 6e-65, Method: Composition-based stats. Identities = 55/210 (26%), Positives = 105/210 (50%), Gaps = 7/210 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 ++ +++DDH L A+R+LL + DI ++ E +G SA Q E PD++++D+ +PGV+ Sbjct: 23 ISVLLVDDHVLFRQALRHLLEAEPDIRVIGEAGDGRSAQQLAERFHPDVILMDISMPGVD 82 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ L+ + III++ + + AGA+ ++ K + +I AI A G Sbjct: 83 GVTATRDLKAGIPNTKIIILTMFAEDGHVIRAIRAGADAYLLKNSESSKVIDAIRAVARG 142 Query: 120 YCYFPFSLNRFVG------SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 L + S +++ + L+++EI ++R + G N +IA ++ ++ Sbjct: 143 ESVIEPQLATKLLNEFRRISEFREEETVAGLTEREIQLLRLVASGMSNKEIAAELSLAES 202 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TV S L EKL+ K +A + + Sbjct: 203 TVKNRLSLLFEKLDVKDRTQAAIYALSHGL 232 >UniRef50_C5T9P3 Two component transcriptional regulator, LuxR family n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T9P3_ACIDE Length = 239 Score = 248 bits (635), Expect = 7e-65, Method: Composition-based stats. Identities = 58/202 (28%), Positives = 99/202 (49%), Gaps = 1/202 (0%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDHPL +R L I + E G ++ L PDIV+ D+ +P + Sbjct: 5 IRILLVDDHPLVRDGVRMRLEATEHICVAGEAASVGESLPLAHALAPDIVLTDIRMPAAS 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI + R++ ++++S +D Y + GA G+V K +I AIEA G Sbjct: 65 GIHLAAVFREQFPRVRVLVLSMHDDAEYVRRAVSLGARGYVLKDAPAQQLIEAIEAVHQG 124 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 CYF L + + S + SL+ +E SV++++ +G+ N +IA M S +TV T++ Sbjct: 125 GCYFSPGLEQLLDDAGSVARSNRSLTPREASVLQWVSEGRSNKEIAALMGTSVRTVETHR 184 Query: 180 SRLMEKLECKSLMDLYTFAQRN 201 L KL + L +A + Sbjct: 185 LHLRRKLRIEGQAALMKYAVDH 206 >UniRef50_Q2W7M4 Response regulator n=3 Tax=Magnetospirillum RepID=Q2W7M4_MAGSA Length = 209 Score = 248 bits (635), Expect = 9e-65, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 107/205 (52%), Gaps = 2/205 (0%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 + +I +D L + LL +D+ I+ E +G A++ TL PD+V++D+ +P ++G Sbjct: 3 VRILIAEDQQLVRQGLVALLAVDDVTIVGEAEDGKGAIEMARTLAPDVVLMDLSMPELDG 62 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 ++ +++ +++++ N AGA+G+ KK G ++AAI A G Sbjct: 63 VEATRRIKQVAPQVRVLVLTVANCERRVAEALAAGADGYALKKLGHGELMAAINAVCAGK 122 Query: 121 CYFPFSLNRFVGS--LTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTY 178 Y L+ + L SL+ +E V++ I G N +IA+++ I+ KTV T+ Sbjct: 123 TYLGPGLSEDLVKEYLEGSDMGGGSLTAREREVLQLIARGHKNREIADELGIAIKTVETH 182 Query: 179 KSRLMEKLECKSLMDLYTFAQRNKI 203 ++++M+KL+ + +L +A R + Sbjct: 183 RTKIMQKLDLHNSAELAAYAIRRGL 207 >UniRef50_A1SKW0 Two component transcriptional regulator, LuxR family n=1 Tax=Nocardioides sp. JS614 RepID=A1SKW0_NOCSJ Length = 215 Score = 248 bits (634), Expect = 1e-64, Method: Composition-based stats. Identities = 54/204 (26%), Positives = 102/204 (50%), Gaps = 3/204 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH L R +L + +D++++ + G A+ V L P +V++D+ +PG+N Sbjct: 6 IAVLVVDDHTLHRDGTRRILEQYDDVDVVGDAASGEDALAMVNRLHPRVVLMDIRLPGMN 65 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ +R+R ++IV+A +D Y + D GA G++SK ++ A+ A G Sbjct: 66 GIEATRRIRERHPDTRVLIVTAYDDEEYVRGAFDVGAAGYLSKTAPGRELVEAVRAVAGG 125 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 +L L ++L+ +E +V+R + +G N IA ++ IS +TV + Sbjct: 126 NSVLQPTL--MAALLAKRSSPANTLTDRERAVLRLLAEGMHNKQIASRLGISARTVERHC 183 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 R+ KL S + A + Sbjct: 184 DRIYGKLGVTSRTEAVVRAISANL 207 >UniRef50_Q46VQ7 Regulatory protein, LuxR:Response regulator receiver n=32 Tax=Betaproteobacteria RepID=Q46VQ7_RALEJ Length = 231 Score = 248 bits (634), Expect = 1e-64, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 103/205 (50%), Gaps = 5/205 (2%) Query: 2 NAIIIDDHPLAIAAIRN-LLIKNDIEILAELTEGGSAVQRVET----LKPDIVIIDVDIP 56 ++IDDH L +R L ++ D+ ++ E G +A+ +E +PD+VI D+ + Sbjct: 20 RVLLIDDHALVRDGMRMHLTLQPDLYVVGEADGGEAALAWLERAGARERPDLVITDIGMR 79 Query: 57 GVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAA 116 G+ GI + L ++ +++VS ++ Y + AGA G+V K + ++AAIEA Sbjct: 80 GMGGIALTAALHEQYPEIAVLVVSMHDNLEYARQAVRAGARGYVLKDAPADELMAAIEAV 139 Query: 117 KNGYCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 G ++ + R + LD+L+++E ++ I G N +IA ++ +S +TV Sbjct: 140 LAGRVFYSARIARGMAEQMPATGPLDALTRRERDILGCIGRGMANKEIATQLGVSVRTVE 199 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRN 201 T++ L KL + L +A Sbjct: 200 THRLNLKRKLGIEGRAGLVKYAVEQ 224 >UniRef50_B1Y1Z3 Two component transcriptional regulator, LuxR family n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y1Z3_LEPCP Length = 235 Score = 248 bits (634), Expect = 1e-64, Method: Composition-based stats. Identities = 56/208 (26%), Positives = 107/208 (51%), Gaps = 4/208 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKNDI-EILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 ++ +I+DDH + ++ +L ++AE + G A++ + D+ I+D+ +PG+N Sbjct: 13 LHILIVDDHVIVREGLQRILEATGAGWVVAEASSGFQALEVMRHQPIDLAIVDLSMPGMN 72 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ +++ +R ++++S + Y AGANG+V+K ++ A+ G Sbjct: 73 GLDLIKRIRTEFPRVRVLVLSMHAEEQYAMRAFKAGANGYVTKDGASAELVNAVRKVATG 132 Query: 120 YCYFPFSLNRFV---GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 Y SL V + + LS +E+ V+R I+ G+ DIAE + +S KTVS Sbjct: 133 GAYVTASLAERVVLQLNGATTAPGHAQLSDRELEVLRRIVAGERITDIAEALHLSVKTVS 192 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKIG 204 T+KSR+ EKL+ ++ L + + + Sbjct: 193 THKSRIQEKLQLPTMAALIRYGMAHGLA 220 >UniRef50_UPI0001B502C9 two component LuxR family transcriptional regulator n=1 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B502C9 Length = 229 Score = 248 bits (634), Expect = 1e-64, Method: Composition-based stats. Identities = 50/204 (24%), Positives = 101/204 (49%), Gaps = 1/204 (0%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I DDH + +R +L + N+I+++ E T G AV+ L PD+V++D+ +P ++ Sbjct: 3 LRVLIADDHAVVRQGLRMILGLDNEIKVVGETTNGREAVRLARELCPDVVLMDLLMPVMD 62 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ +R+ ++ +++ D AGA GF+ K +++ A++AA G Sbjct: 63 GVSATAEIRQDIPEVEVVALTSSLDDAMVMGAVRAGAIGFLLKNAEADDLRNAVKAAAAG 122 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 + + + + + L+++E V+ + GK N +IA + I +TV TY Sbjct: 123 QIHVSPAAISRLMGQVREPSGPEQLTERETEVLTMLARGKANKEIARDLRIGQQTVKTYV 182 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 S ++ KL S +A ++ + Sbjct: 183 SHILTKLGVHSRTQAAVYAVQSGL 206 >UniRef50_B9QSJ5 Response regulator receiver domain protein n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9QSJ5_9RHOB Length = 212 Score = 247 bits (633), Expect = 2e-64, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 105/206 (50%), Gaps = 3/206 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH L IR L K +IE++ E T G AV+ L+PD++++DV +P +N Sbjct: 5 IRVLLADDHALVRDGIRARLNKVPEIEVVGEATNGREAVKLAHELRPDVLLMDVSMPVMN 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ +RK ++I+S ++ Y + AGA G++ K +I AI + +G Sbjct: 65 GLEAAAEVRKSFPEIAVLILSIYDNSEYVRGVVQAGARGYILKDISAPEMITAISSVASG 124 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDS--LSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 YF ++ + + D L+ +E V+ I G N ++A+ + IS +TV + Sbjct: 125 GYYFSSAVGPTLVGTATSAPIEDPYGLTDRERQVLTAIAKGLPNKEVAKSLGISVRTVES 184 Query: 178 YKSRLMEKLECKSLMDLYTFAQRNKI 203 ++ L EK+ K+ LY AQ + Sbjct: 185 HRLNLREKVGNKNAAQLYKVAQDLGL 210 >UniRef50_C7RMN3 Two component transcriptional regulator, LuxR family n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RMN3_9PROT Length = 213 Score = 247 bits (633), Expect = 2e-64, Method: Composition-based stats. Identities = 52/204 (25%), Positives = 107/204 (52%), Gaps = 3/204 (1%) Query: 3 AIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGI 61 +++DDH + +R LL + +D+E+++E A+ + + D+ ++D+ +PG G+ Sbjct: 8 ILLVDDHAVVRGGLRLLLAQTDDMEVVSEAENAEQAISMIRQNEFDVALVDIGLPGKGGL 67 Query: 62 QVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 121 +L+ ++ + ++++S + Y AGA+G+++K ++AAI G Sbjct: 68 DLLKQIKAERPRIAVLMLSMYAEEVYAVRALKAGASGYLTKNSPPGTLLAAIRKVAGGGR 127 Query: 122 YFPFSLNRFVGSLTSDQQK--LDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 + +L + +K D+LS +EI V+R + G+ IAE + +S KTV+TY+ Sbjct: 128 HVSPALLEQLAVEVGQGRKSASDALSDREIEVLRRLASGESLTQIAEALHLSPKTVTTYR 187 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 +R++EK S +L +A + Sbjct: 188 ARIVEKTGLHSNAELTRYALDKGM 211 >UniRef50_A1K960 Probable transcriptional regulator, LuxR family n=1 Tax=Azoarcus sp. BH72 RepID=A1K960_AZOSB Length = 209 Score = 247 bits (632), Expect = 2e-64, Method: Composition-based stats. Identities = 56/208 (26%), Positives = 114/208 (54%), Gaps = 4/208 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I DDH + +R L + +I+AE G +A++ V T D+V++D+ +P +N Sbjct: 2 VKVLIADDHAVVRGGLRQFLSSTEEFDIVAEAANGQTALELVRTSGCDVVLLDITLPDLN 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++VL+ +++ + ++I S ++ + +AGA+G+++K I+AA+ G Sbjct: 62 GLEVLKRIKRSKPDLPVLIFSMFSEDEFALPALNAGASGYLNKDSPPAQILAALHTVVAG 121 Query: 120 YCYFPFSLNRFVGSLTSDQQ---KLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 Y SL + + T ++LS +E++V+ + G I E+ +S KT+S Sbjct: 122 ARYVSPSLAERLLAGTMSPGKRLPHENLSPREMAVLLLLSKGVPLTRIGEQFHLSVKTIS 181 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKIG 204 TY++R++EKL+ S ++ + ++K+G Sbjct: 182 TYRARILEKLDLASNAEITRYVLQHKLG 209 >UniRef50_B2J2N1 Two component transcriptional regulator, LuxR family n=12 Tax=Cyanobacteria RepID=B2J2N1_NOSP7 Length = 232 Score = 247 bits (631), Expect = 2e-64, Method: Composition-based stats. Identities = 48/208 (23%), Positives = 101/208 (48%), Gaps = 10/208 (4%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I+DD L ++ +L + D+E++ + G A++ V L+PD+V++D+ +P ++ Sbjct: 9 IRLLIVDDQSLIRQGLKAMLEQEPDLEVVGDAENGKVALELVAELQPDVVLMDIRMPEMD 68 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G + + + + ++++S +D Y AGA G++ K + + AI +G Sbjct: 69 GRTATKLIMQSFPNIKVLVLSTFDDDSYLTGAMRAGAKGYLLKDMPSSELADAIRFGHSG 128 Query: 120 YCYFPFSL---------NRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFI 170 Y F L + S K ++ +E V+ I G N +IA++++I Sbjct: 129 YTQFGPGLFDKLLVTEAASASANQNSASSKPSEITAREQEVLCLIGVGATNREIAQQLYI 188 Query: 171 SNKTVSTYKSRLMEKLECKSLMDLYTFA 198 + TV T+ + ++ +L K+ L +A Sbjct: 189 TEGTVKTHVTSILSRLNLKNRSQLAIYA 216 >UniRef50_D1XHI5 Two component transcriptional regulator, LuxR family n=4 Tax=Streptomyces RepID=D1XHI5_9ACTO Length = 222 Score = 247 bits (631), Expect = 2e-64, Method: Composition-based stats. Identities = 47/213 (22%), Positives = 91/213 (42%), Gaps = 12/213 (5%) Query: 4 IIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 ++ DD + I LL + IE++ +G AV V PD+V++D+ +P +G++ Sbjct: 2 VVADDQAIVREGIVMLLGLLPGIEVVGAAKDGDEAVALVAEKAPDVVLMDLRMPRCDGVE 61 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 +RK +++++ D AGA G+++K I+ AI+A +G Sbjct: 62 ATRRIRKEHPRTQVVVLTTFADDDSLFTALQAGARGYLTKDARGEEIVQAIDAVMSGEAG 121 Query: 123 FPFSLNRFVGSLTSDQQKL-----------DSLSKQEISVMRYILDGKDNNDIAEKMFIS 171 + R + + + + D L+ +E V+ I +G N +IA + +S Sbjct: 122 LSPKVQRRLLERVTGSETVPAPCALPSELPDGLTPREAEVLVLIAEGLSNREIARALHVS 181 Query: 172 NKTVSTYKSRLMEKLECKSLMDLYTFAQRNKIG 204 TV T+ + L K + +A + Sbjct: 182 AATVKTHINNLFAKTGARDRTQAVRYAYGRGLA 214 >UniRef50_O32197 Transcriptional regulatory protein liaR n=142 Tax=Firmicutes RepID=LIAR_BACSU Length = 211 Score = 247 bits (631), Expect = 2e-64, Method: Composition-based stats. Identities = 54/208 (25%), Positives = 103/208 (49%), Gaps = 5/208 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++IDDH + + L + DIE++ E ++G V+ L PD++++D+ + G++ Sbjct: 2 IRVLLIDDHEMVRMGLAAFLEAQPDIEVIGEASDGSEGVRLAVELSPDVILMDLVMEGMD 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ + + + II++++ D +AGA ++ K I AI AA G Sbjct: 62 GIEATKQICRELSDPKIIVLTSFIDDDKVYPVIEAGALSYLLKTSKAAEIADAIRAASKG 121 Query: 120 YCYFPFSLNRFVGSLTSDQQ----KLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 + V S +SL+K+E+ ++ I +GK N +I E++FI+ KTV Sbjct: 122 EPKLESKVAGKVLSRLRHSGENALPHESLTKRELEILCLIAEGKTNKEIGEELFITIKTV 181 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKI 203 T+ + ++ KL+ +A RN + Sbjct: 182 KTHITNILSKLDVSDRTQAAVYAHRNHL 209 >UniRef50_B5YIR2 Response regulator UvrY n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YIR2_THEYD Length = 213 Score = 246 bits (630), Expect = 3e-64, Method: Composition-based stats. Identities = 51/207 (24%), Positives = 105/207 (50%), Gaps = 4/207 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I+DDH L ++ +L+ I+ E G A+ + DIV +D+ + +N Sbjct: 5 LKVLIVDDHTLFRKGLKEILLDTPYIKECKEAKSGYEAIDILSKESFDIVFLDIAMSDIN 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ L+ ++ I+++S + Y GA+G+++K ++ A++ G Sbjct: 65 GIETLKKIKILYPETKILMLSMYPEEQYAIRSLKCGASGYLTKSADPEELLKAVDKIIKG 124 Query: 120 YCYFPFSLNRFVG---SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 Y P + + + + D + LS++E V I GK +I++++ IS KTVS Sbjct: 125 GKYLPHTFSEKLLHYIDKSEDIPPHEKLSEREFQVFLMIAKGKSLIEISKELSISIKTVS 184 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKI 203 TY++R++EKL ++ ++ +A ++ + Sbjct: 185 TYRARILEKLGLENNAEIINYAIKHGL 211 >UniRef50_D1C9Z8 Two component transcriptional regulator, LuxR family n=4 Tax=Bacteria RepID=D1C9Z8_SPHTD Length = 212 Score = 246 bits (630), Expect = 3e-64, Method: Composition-based stats. Identities = 45/208 (21%), Positives = 104/208 (50%), Gaps = 5/208 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDHP+ + +L + D+ ++ E +G AVQ+ LKPD+V++D+ +PG + Sbjct: 2 IRILVVDDHPVVREGLVAILEAQEDLTVVGEAGDGDQAVQQYRDLKPDVVLMDLAMPGTD 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+Q ++ +++ + +++++A + AGA+G++ K +I A+ G Sbjct: 62 GVQAIQEIKRIDPNARVVVLTAYDTDERILQAVQAGASGYLLKGAPREDIFRAVRVVYRG 121 Query: 120 YCYFPFSLN----RFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 + +G L + + L+ +E+ V+ + G N +IA ++ I+ +TV Sbjct: 122 GSLLEPVVAGKLLNRMGDLLRGEPVEEELTARELDVLTLMARGLRNKEIAYELSITERTV 181 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKI 203 + + + KL+ + + A + + Sbjct: 182 KFHANAIYRKLDVSGRTEAVSKAIQRGL 209 >UniRef50_A5WFD3 Two component transcriptional regulator, LuxR family n=3 Tax=Psychrobacter RepID=A5WFD3_PSYWF Length = 211 Score = 246 bits (630), Expect = 3e-64, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 113/207 (54%), Gaps = 4/207 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH L I +L +IE++ E G +A++ V+ L PD+V++DV++P + Sbjct: 2 IKVLVVDDHDLVRMGISRMLADDPEIEVIGEADSGEAAIRMVKALSPDVVLLDVNMPNIG 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + LR+ I+ VS+ + Y AG NG+++K ++ +I AI+ G Sbjct: 62 GVETTKRLRQFDEKVKILAVSSVSSQPYPSMLLKAGVNGYITKGTPLDEMIKAIKKVYQG 121 Query: 120 YCYFPFSLNRFVGSLT---SDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 YF + + + +++ D LS++E V +++ + IA+++F+S KTV+ Sbjct: 122 SKYFSSDVAEQLADMLLTDNEESPFDRLSEREKQVAMMVVNCQSPQQIADQLFVSVKTVN 181 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKI 203 TY+ R+ EK+ S + L A R+ + Sbjct: 182 TYRYRIFEKVGVDSDVKLTHLAMRHGL 208 >UniRef50_Q13QW9 Two component transcriptional regulator, LuxR family n=5 Tax=Burkholderia RepID=Q13QW9_BURXL Length = 220 Score = 246 bits (630), Expect = 3e-64, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 103/206 (50%), Gaps = 3/206 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 ++ +++DDH + R LL D+ + E + A QR L+PD+V++DV +PG + Sbjct: 6 ISVLLVDDHAVVREGYRRLLELNADVHVCGEAADAAQAYQRFCALRPDVVVMDVSLPGAS 65 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ + + R+ ++I S + + + DAGA G+V+K + ++ A+ Sbjct: 66 GIEAMRRMLAREPDARVLIFSVHEEAIFVRRALDAGALGYVTKASAPDVLVEAVRTIARR 125 Query: 120 YCYFPFSLNRFVG--SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 Y +++ + + S+ LS +E V+R ++ G IAEK+ +S KTV+ Sbjct: 126 AGYLSPDISQALALRNAFSEGPPGRQLSAREFEVLRLLVQGYTLPSIAEKLGLSQKTVAN 185 Query: 178 YKSRLMEKLECKSLMDLYTFAQRNKI 203 ++S + +K + + L A R + Sbjct: 186 HQSVIRQKFGADNGVQLAQMASRLGL 211 >UniRef50_Q98DH9 Two-component system response regulator n=1 Tax=Mesorhizobium loti RepID=Q98DH9_RHILO Length = 215 Score = 246 bits (630), Expect = 3e-64, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 107/207 (51%), Gaps = 4/207 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I DDHP+ + IR +L + + + E G +AV+ IVI+D +P +N Sbjct: 6 IKIVIADDHPIVRSGIRAVLEQRAEWWVCGEADNGETAVRLAREHAAKIVILDYSLPVLN 65 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ +R+ ++I + D + AGA G++ K E + ++AA+ A G Sbjct: 66 GLEATRIIRRTMPETEVLIYTMHEDESLIRETLRAGARGYLLKIEDDSELVAAVAALIRG 125 Query: 120 YCYFPFSLNRFVGSLTSDQQK---LDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 YF ++ V D Q +L+ +E V+R++ +G+ N IA ++ +S KTV Sbjct: 126 QTYFSPRVSECVLQDFLDGQSDVTSRNLTNREREVVRFVSEGESNKRIAARLGVSVKTVD 185 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKI 203 ++++ M KL ++ +DL +A RNK+ Sbjct: 186 SHRTTAMRKLGLRNAVDLVRYAIRNKL 212 >UniRef50_Q3Z8L1 DNA-binding response regulator, LuxR family n=6 Tax=Bacteria RepID=Q3Z8L1_DEHE1 Length = 224 Score = 246 bits (629), Expect = 4e-64, Method: Composition-based stats. Identities = 51/210 (24%), Positives = 105/210 (50%), Gaps = 8/210 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH + R L+ ++ + ++ E ++G AV+ + PD+V++D+ +P +N Sbjct: 7 IKVLLADDHVIVREGTRELIQRESGMMVVGEASDGVEAVEMSMKVHPDVVVMDIAMPRLN 66 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ + +++ + I+I++A Y +AGA F+ K ++ AI A G Sbjct: 67 GIEATKQIKQLLPTTAILILTAYESEQYILAILEAGAASFLLKNVKGTQLLEAIRAVYAG 126 Query: 120 YCYFPFSLNRFV-------GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 S R V + T + ++ L+ +EI V++ G N DIA+++++SN Sbjct: 127 ESVLQPSTTRRVIDQLINKATKTEEVSAVNPLTDREIEVLKMAARGVSNKDIADQLYLSN 186 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNK 202 +T+ T+ S + +KL S + + + Sbjct: 187 RTIQTHLSNIFKKLSVGSRTEAILYGLKRG 216 >UniRef50_Q5NY27 DNA-binding response regulator, LuxR family n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NY27_AZOSE Length = 215 Score = 245 bits (628), Expect = 5e-64, Method: Composition-based stats. Identities = 52/208 (25%), Positives = 101/208 (48%), Gaps = 5/208 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH + A+R +L + I I+ E + G + + DI +D+ +PG+N Sbjct: 3 IRIVLADDHQMFRHALRAMLEKEPGIRIVGEASNGDELIDLISHQPVDIACVDIGMPGMN 62 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ L + +I +SA +D + +AGA G+V+K E ++ AI + Sbjct: 63 GIEATRRLLAIRPHVRVIGLSAFSDRQFVLDLLNAGATGYVTKAEAGEELLRAIHTVQQS 122 Query: 120 YCYFPFSLNRFVGSLTSDQQKLD----SLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 Y + V + D D ++ +E V++ I +G + IA+++ ++ TV Sbjct: 123 KTYLCPDVAATVTNALLDNAPKDISAPRITARERQVLQLIAEGYTSTRIADRLHLAPSTV 182 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKI 203 ++ +M KL+ S+ +L +A R+ I Sbjct: 183 EVHRRNIMRKLDLHSVAELTKYAIRSGI 210 >UniRef50_B0C756 Two-component transcriptional regulator, LuxR family n=1 Tax=Acaryochloris marina MBIC11017 RepID=B0C756_ACAM1 Length = 224 Score = 245 bits (628), Expect = 5e-64, Method: Composition-based stats. Identities = 43/204 (21%), Positives = 103/204 (50%), Gaps = 6/204 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DD + ++ + +IEI+ E G +A+ + +TL+PD++++D+++P ++ Sbjct: 8 IRVLLVDDEDIVRYGLKAIAQGTPEIEIVGEAGSGKAAIAQAKTLQPDVILMDINMPQMD 67 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ + + + Q ++I++ ++ Y GA G++ K + I +I+ A G Sbjct: 68 GVTATQEISRIQPHAKVLILTTHDEAEYLVEAMQQGAVGYLLKNTPPEDFIQSIQQAHKG 127 Query: 120 YCYFPFSLNRFVGSLTSDQ-----QKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 Y L + + L + + ++ +E V++ + G N +I+E + I+ KT Sbjct: 128 YLQLGPGLGQKLCQLLKTPVRPQIEAFEGITPREQDVLKLVATGASNREISETLHITEKT 187 Query: 175 VSTYKSRLMEKLECKSLMDLYTFA 198 V + S ++ ++ +S L +A Sbjct: 188 VKNHVSSILSRVGVQSRTQLAIWA 211 >UniRef50_Q1ASU8 Two component transcriptional regulator, LuxR family n=2 Tax=Bacteria RepID=Q1ASU8_RUBXD Length = 207 Score = 245 bits (628), Expect = 5e-64, Method: Composition-based stats. Identities = 48/204 (23%), Positives = 94/204 (46%), Gaps = 4/204 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDHP+ + +L + E++ E +G ++ L+PD+V++D+++PG Sbjct: 4 IRILVADDHPMLREGLSAVLGTRPGFEVVGEAGDGEEVLRLASGLRPDVVLLDLEMPGTG 63 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++VL LR +++ +A +D GA G + K I A+ G Sbjct: 64 GVEVLRRLRGLDDPPKVVVFTAYDDERLL-EALREGARGCLLKGASRTEIFDAVRTVHAG 122 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 P + V + + L+ +E+ V+R + G N ++A +FIS +TV + Sbjct: 123 GSVIPPEITARVLKEMRGES--EPLTPRELEVLRLVARGLTNREVARALFISERTVKFHV 180 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 S L+ KL ++ A+ + Sbjct: 181 SSLLAKLRAENRTQAVAIARERGL 204 >UniRef50_B1ZY58 Two component transcriptional regulator, LuxR family n=3 Tax=Bacteria RepID=B1ZY58_OPITP Length = 223 Score = 245 bits (628), Expect = 6e-64, Method: Composition-based stats. Identities = 46/204 (22%), Positives = 104/204 (50%), Gaps = 5/204 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDHP + L+ + ++++AE ++G A++ + L+PD+V++D+ +PG+ Sbjct: 20 IRVLVVDDHPPMRVGLVALIRSQPGMDVVAEASDGEEAIEIYDDLQPDVVLMDLRMPGMG 79 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + +RK+ +I++S + +GA ++ K + I + + A G Sbjct: 80 GVEAILAIRKKAPEARVIVLSTYDWDEDIHRALQSGAKSYLLKDMPIEEIASTVRAVYAG 139 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 P S+ + +++ + + L+++E V+ ++ G+ N +IA + IS TV ++ Sbjct: 140 DTSLPRSVAERL----TERAQREQLTERERDVLESLIKGRSNKEIASSLCISEDTVKSHL 195 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 L KL + A R+ I Sbjct: 196 KTLFAKLRVRDRTGAAIEAIRHGI 219 >UniRef50_A1ZYF0 DNA-binding response regulator, LuxR family n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZYF0_9SPHI Length = 218 Score = 245 bits (627), Expect = 6e-64, Method: Composition-based stats. Identities = 49/213 (23%), Positives = 107/213 (50%), Gaps = 10/213 (4%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + I DDH L + +L ++IE++ G + +V+ PD++++D+ +P ++ Sbjct: 3 VKVAIADDHVLFRKGLVTILELDDNIEVVYGADNGKELIDKVDAQPPDVILMDLKMPVMD 62 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + ++ + ++++S ++ + HC + GANG++ K + ++ AI Sbjct: 63 GMEATKIIKAKYPEVKVLVLSMYDEEKFIIHCLELGANGYLLKNTDPDELVHAIGTVMAK 122 Query: 120 YCYFPFSLNRFVGSLTSDQQKLD---------SLSKQEISVMRYILDGKDNNDIAEKMFI 170 YF ++ + + +++ L+K+E V+ I ++AEK+FI Sbjct: 123 DFYFNNHISTVMLKGLNQKKRAKGKPQFENSIELTKREQEVLELICKELTTPEMAEKLFI 182 Query: 171 SNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 SN+TV ++ L+EK K+ L FA +N++ Sbjct: 183 SNRTVEGHRKNLLEKTGAKNTAGLVVFALKNEL 215 >UniRef50_P55184 Uncharacterized transcriptional regulatory protein yxjL n=1 Tax=Bacillus subtilis RepID=YXJL_BACSU Length = 218 Score = 245 bits (627), Expect = 6e-64, Method: Composition-based stats. Identities = 54/211 (25%), Positives = 98/211 (46%), Gaps = 8/211 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + + DD PL R ++ + D+ + E +G + + KPD++++DV +P + Sbjct: 6 IRVALADDQPLVREGFRYVINAQTDMTVSGEAGDGHDIIALAKQTKPDVILMDVQMPRCS 65 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ + + + I+I++ + Y AGA G++ K +I AI AA G Sbjct: 66 GIEAAKDIMSALPNTKIVILTTFDTEEYVFEGIRAGAVGYLLKDTLPEELIDAIRAAARG 125 Query: 120 YCYFPFSLNRFV-------GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 F + T ++ + +K+E+ V++ + G N DIAEK+F+S Sbjct: 126 EAIFRTVTAAKIISETFRAKQQTHAEELAEPFTKRELEVLQQMAYGLRNEDIAEKLFVSE 185 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TV T+ R+++K + FA RN I Sbjct: 186 STVKTHVHRILQKCNAQDRTQAVVFAIRNGI 216 >UniRef50_Q67MG8 Two-component response regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67MG8_SYMTH Length = 197 Score = 245 bits (627), Expect = 7e-64, Method: Composition-based stats. Identities = 48/194 (24%), Positives = 97/194 (50%), Gaps = 8/194 (4%) Query: 18 NLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIII 77 L + D+E++ E G AV+ + LKPD+VI+D+ +P ++GI+ +++ +I Sbjct: 1 MLQSEPDLELVGEAGRGEEAVELTKALKPDVVIMDISLPDMSGIEATRLIKEAVPETRVI 60 Query: 78 IVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYFPFSLNRFV------ 131 ++ + + AGA+ ++ K+ +++ AI A G ++ R V Sbjct: 61 GLTMHEEEPFVLEFLRAGADAYIVKRSAAADLVGAIRAVMEGQAVLDPAVTRAVVEGYVS 120 Query: 132 --GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKSRLMEKLECK 189 G ++ L+ +E ++ I +G N +IA +++IS KTV T++S +++KL Sbjct: 121 RPGRAVGQPEEPCPLTPREREILVLIAEGLTNAEIARRLYISEKTVQTHRSNMLDKLGIH 180 Query: 190 SLMDLYTFAQRNKI 203 +L +A R + Sbjct: 181 DRTELVRYAIRQGL 194 >UniRef50_C0Q9H4 Two component transcriptional regulator (LuxR family protein) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0Q9H4_DESAH Length = 217 Score = 245 bits (627), Expect = 7e-64, Method: Composition-based stats. Identities = 52/208 (25%), Positives = 106/208 (50%), Gaps = 7/208 (3%) Query: 2 NAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 +I DDH + I ++ + + ++ E+ +G + + T D+VI+D+ +P ++G Sbjct: 5 RVVIADDHAMLRRGICQVIETQEGVSVVGEVGDGIELLNLLSTQPADLVILDISMPKMSG 64 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 I+ + +R I+ +S + Y H AGANG++ K++ I+ A++ G Sbjct: 65 IEAAKKIRATYPGIKILFLSMHKRNEYLYHAFSAGANGYLLKEDTDTEILTAMDTILEGK 124 Query: 121 CYFPFSLNRFVGSLTSDQQKLDS------LSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 + + + + +D K S LS +E V+ + +GK N IA+ + IS +T Sbjct: 125 AFLSSIFTKDMPDILTDMVKNGSSFPGGTLSPREEEVLTLLAEGKSNKKIADILCISTRT 184 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQRNK 202 V +++ +M++L+ ++L DL +A R+ Sbjct: 185 VEHHRASIMKRLDLRTLADLIKYAIRHG 212 >UniRef50_B2A8K6 Two component transcriptional regulator, LuxR family n=9 Tax=Clostridia RepID=B2A8K6_NATTJ Length = 228 Score = 245 bits (626), Expect = 8e-64, Method: Composition-based stats. Identities = 44/216 (20%), Positives = 102/216 (47%), Gaps = 13/216 (6%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH L ++ +L ++ D+ + E G V +V+ LKP+I+++D+++P +N Sbjct: 10 IRILLADDHALFRQGLKKILDMEEDLAVCGEAQNGEEVVDKVKLLKPNIILMDINMPLLN 69 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + +++ +I ++ D Y GA GF+ K ++ AI+ G Sbjct: 70 GVEATKYVKEVSPETKVIALTIHEDEEYLFEIVKEGAAGFLLKDVETPTLVQAIQEVNKG 129 Query: 120 YCYFPFSLNRFV------------GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEK 167 + ++ + ++ SD+ L+ +E ++ + G N +I+++ Sbjct: 130 NSFIHPTITHKLLGEFNRLAQNSPRNIKSDEAVQSELTGREKEILELMAQGYTNKEISKE 189 Query: 168 MFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 ++IS KTV + S ++ K++ A + + Sbjct: 190 LYISEKTVKNHVSNILRKMDVTDRTQAVITALKCGV 225 >UniRef50_B8GSX5 Response regulator receiver protein n=2 Tax=Ectothiorhodospiraceae RepID=B8GSX5_THISH Length = 220 Score = 245 bits (626), Expect = 8e-64, Method: Composition-based stats. Identities = 62/210 (29%), Positives = 114/210 (54%), Gaps = 7/210 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK----NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIP 56 ++ +++DDH L IR LL + I+++ E G A+ + LKPD+V++D+++P Sbjct: 2 IDVLLVDDHELVRMGIRGLLDERAAVTGIQVVGEAHSGEEALVEAKRLKPDVVLMDINMP 61 Query: 57 GVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAA 116 G+ G+ + + Q S +++++A ++ + +AGA+G+++K + +IAAI+ A Sbjct: 62 GIGGLVATRRIVEAQPSVKVLVLTAMDEGPVPRWVLEAGASGYLTKGCRIEEMIAAIQGA 121 Query: 117 KNGYCYFPFSLNRFV---GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 G + ++ + + G D LS +E ++ IL G+ IA + IS K Sbjct: 122 MQGERHISPAVAQRLALGGLAKGQANPFDELSGRERQILLMILQGQTPQAIATALNISPK 181 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TVSTYK R+M KL + M L T A ++ + Sbjct: 182 TVSTYKCRVMGKLGISNDMQLVTLAAQHGL 211 >UniRef50_A1SGL7 Response regulator receiver n=1 Tax=Nocardioides sp. JS614 RepID=A1SGL7_NOCSJ Length = 213 Score = 245 bits (626), Expect = 8e-64, Method: Composition-based stats. Identities = 48/208 (23%), Positives = 101/208 (48%), Gaps = 8/208 (3%) Query: 4 IIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +++DD L + LL + IE++ E +G T PD+V++D+ +P +GI+ Sbjct: 2 LVVDDQELFRRGLTMLLGTEAGIEVVGEAGDGVEGTNLAATAAPDVVLLDIRMPKRSGIE 61 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 +++ S II+++ ++ +GA+G++ K + + A+ +G Sbjct: 62 ACLAIKEAVPSAKIIMLTVSDEEADLYEAVKSGASGYLLKDSSIEEVAQAVRVVADGQSL 121 Query: 123 FPFSLN-------RFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 S+ + + D L+++E+ V+R + G +N +IA+++FIS TV Sbjct: 122 ISPSMAVKLIDEFKQMSRPERDHVPGLRLTERELEVLRLVAKGMNNREIAKELFISENTV 181 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKI 203 + ++EKL+ S M+ +A + K+ Sbjct: 182 KNHVRNILEKLQLHSRMEAVMYAVKEKL 209 >UniRef50_C6E3E1 Two component transcriptional regulator, LuxR family n=4 Tax=Deltaproteobacteria RepID=C6E3E1_GEOSM Length = 223 Score = 245 bits (626), Expect = 9e-64, Method: Composition-based stats. Identities = 54/212 (25%), Positives = 104/212 (49%), Gaps = 10/212 (4%) Query: 2 NAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 +I+DDHPL +++L+ ++ + + + E G A+ + LKPD+V +DV +P ++G Sbjct: 5 RVLIVDDHPLFREGVKSLVERSANYQAVGEAGCGAEALALAQELKPDLVTMDVSLPDMSG 64 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 I+V+ + I+++S Y AGA G+V K+ +I +A G Sbjct: 65 IEVVRGILDLAPETRILMLSMYPKFDYVAEAFKAGAKGYVVKETTTARLIQGFDALCRGE 124 Query: 121 CYFPFSLNRFVGSLTSDQQKLDS---------LSKQEISVMRYILDGKDNNDIAEKMFIS 171 + +++ + + + D L+ +E V+R + +G IA + +S Sbjct: 125 FFVDGQVSQDLVAKLAQGAARDQALQDEKYGLLTPREQQVLRLVAEGSSTRQIAAAIELS 184 Query: 172 NKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 KTV +++ LM+KL+ S M+L +A R + Sbjct: 185 PKTVENHRTNLMKKLDVHSKMELVKYAARLGL 216 >UniRef50_Q09C30 Two-component system regulatory protein n=3 Tax=Proteobacteria RepID=Q09C30_STIAU Length = 213 Score = 244 bits (625), Expect = 1e-63, Method: Composition-based stats. Identities = 53/208 (25%), Positives = 98/208 (47%), Gaps = 8/208 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 +N +++DDH L IR+LL D+ ++ E ++G AV+RV L PD+V++DV +P + Sbjct: 2 INIVLVDDHALIREGIRSLLEFTPDLHVVGEASDGEEAVKRVRELSPDVVLMDVRMPRMT 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ L +R+ +++++ ++ AG GF+ K + + AI NG Sbjct: 62 GLEALRAMRREAPERRVVLLTTFDEDSVVVEALRAGVKGFLLKDVTRDQLADAIRRVANG 121 Query: 120 YCYFPFSLNRFVGSLTSDQQK-------LDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 P + V ++ + + L+++E+ VMR I G N +IA + + Sbjct: 122 ETLLPPGVAERVQRGFTEVPQEFPHAELPEGLTRRELEVMRLIARGLSNREIATVLGTAE 181 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQR 200 TV S ++ KL + A Sbjct: 182 GTVKNQTSNILAKLGVRDRTRAVLRAME 209 >UniRef50_B8CN77 Nitrate/nitrite DNA-binding response regulator, putative n=2 Tax=Shewanella RepID=B8CN77_SHEPW Length = 206 Score = 244 bits (625), Expect = 1e-63, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 113/205 (55%), Gaps = 4/205 (1%) Query: 1 MNAIIIDDHPLAIAAIR-NLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDHPL +R L + +DIE+LAE G A++ + + D+V+ D+++P ++ Sbjct: 2 IRVLLVDDHPLFREGLRYRLSLDSDIEVLAEADNGQQALEILNKMPVDLVLTDINMPQMD 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ +LE +++++ S ++++S ++ Y GA+G++ K +I AI+ G Sbjct: 62 GMYLLELIKEQELSCKVVMLSMHDNKEYIMATMRYGADGYILKDVPGKELIEAIKKVAAG 121 Query: 120 YCYFPFS-LNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTY 178 YF +N L S +Q L +++E V+R I G +N IA++M +S +TV T+ Sbjct: 122 KRYFSADVINTLSQELASGKQALV--TQREQLVLRLISLGMNNKRIAQEMDVSVRTVETH 179 Query: 179 KSRLMEKLECKSLMDLYTFAQRNKI 203 K + +KL S L +A + + Sbjct: 180 KRNIKQKLMIDSTAGLVRYAIDHGL 204 >UniRef50_UPI0001746AEC response regulator with a HTH DNA-binding domain n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001746AEC Length = 222 Score = 244 bits (625), Expect = 1e-63, Method: Composition-based stats. Identities = 48/207 (23%), Positives = 94/207 (45%), Gaps = 7/207 (3%) Query: 2 NAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 +++DDH + + R +L + D+E+ A A+ +E ++PD+V+ D+ + G +G Sbjct: 11 RVLLVDDHRMVLEGYRFMLNAQPDLEVCATAVSAAEALGLLEQVRPDLVVTDLTLGGRSG 70 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 + +++ + I++ S ++ + AGA G+V K + A+ G Sbjct: 71 LDLIKDVMALFPETKILVCSMHDEMLWANRTLQAGARGYVMKDADGPTFLTAVRTVLAGQ 130 Query: 121 CYFPFSLNRFV------GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 Y L V ++ LS +E V R +GK +IA ++ +S KT Sbjct: 131 RYMSSRLAASVLESFGQSKPRGSSSPIEKLSDREFEVFRLFGEGKTAKEIAAQLNLSPKT 190 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQRN 201 VS ++ + EKL + ++ A R+ Sbjct: 191 VSVHRDHIKEKLGFSTSAEMIRQAVRH 217 >UniRef50_C0DXM6 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DXM6_EIKCO Length = 215 Score = 244 bits (624), Expect = 1e-63, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 103/205 (50%), Gaps = 2/205 (0%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDHPL + LL + EI+AE T+G V+ +PD+V++DV++P +N Sbjct: 6 IRILLVDDHPLFRRGLSFLLAQEYGFEIVAEATDGLEGVKLARFHRPDLVLLDVEMPVMN 65 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G + L + Q +++++ D K C + GA G++ K + ++ AI A G Sbjct: 66 GPEALAQMLDFQPGLPVLMLTISEDADNLKKCLELGARGYILKNADTDFLVEAIRQAVAG 125 Query: 120 YCYFPFSLNRFVGSLTSDQQK-LDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTY 178 +N S+ + LDSL+++E V+RY+ G N IA +MF+S TV + Sbjct: 126 QQTVSPEMNNAGQSIPPEHSAILDSLTQRERDVLRYVAGGISNKMIARRMFLSENTVKAH 185 Query: 179 KSRLMEKLECKSLMDLYTFAQRNKI 203 + KL + + +A+ + Sbjct: 186 MQNIFRKLNIDNRVRAAVYARELGL 210 >UniRef50_C0ZDE8 Two-component response regulator n=7 Tax=Bacillales RepID=C0ZDE8_BREBN Length = 214 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 114/207 (55%), Gaps = 5/207 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIP-GV 58 + +++DDH + +R LL + I+I+ E G A+ + LKPD+V++D+ +P G+ Sbjct: 2 IRVLLVDDHTMIRKGLRVLLESYSQIKIVGESHTGNDAILKANQLKPDVVLMDLSLPNGL 61 Query: 59 NGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKN 118 +G + +RK I+I++ ++ + + GA+G++ K + AI Sbjct: 62 DGFTASKEIRKSNPLVKIVILTMHDEEIFVQEAITVGAHGYILKNSHGELLFQAIVEVYR 121 Query: 119 GYCYFPFSLNRFVGSL--TSDQQKLDS-LSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 G C++ S+++ + +L SD + L S L+ +E ++R I+ G N ++A+K+ IS KTV Sbjct: 122 GKCFYKTSVSQEIINLWLRSDAKTLPSVLTLREKELVRLIVLGYSNKEMADKLLISVKTV 181 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNK 202 +K+ +M+KL S L +A +N+ Sbjct: 182 ENHKTNIMQKLGLDSKHQLIQYAIKNR 208 >UniRef50_A9AZR3 Two component transcriptional regulator, LuxR family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AZR3_HERA2 Length = 213 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 51/204 (25%), Positives = 101/204 (49%), Gaps = 2/204 (0%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH + +R LL ++ + I+ E G A++ ++P ++++D+ +P V+ Sbjct: 5 IRIMLVDDHAIVREGLRTLLAEDTEFLIVGEAQNGADAIELAAVVRPHVILMDLVMPNVD 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GIQ + L+ S II++++ +D + AGA+G++ K + AI NG Sbjct: 65 GIQATQALQSLMPSSRIIVLTSFSDDQWVSKAIQAGASGYLLKNVLKAELFLAIRTVANG 124 Query: 120 YCYFPFSLNR-FVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTY 178 + R + T+ L SL+++E SV+ I+ G N +IA + ++ TV Y Sbjct: 125 QPFLHAEAQRTLMRQSTAPPSLLPSLTERERSVLDGIVGGLSNKEIARSLHLTEGTVKGY 184 Query: 179 KSRLMEKLECKSLMDLYTFAQRNK 202 S ++ KL +A ++ Sbjct: 185 VSTILTKLAVADRTQAALYAIKHG 208 >UniRef50_B8CZJ8 Two component transcriptional regulator, LuxR family n=1 Tax=Halothermothrix orenii H 168 RepID=B8CZJ8_HALOH Length = 209 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 103/205 (50%), Gaps = 2/205 (0%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++DDHP + ++ L + IEI+ G A++ + L P++ ++D+ +PG+N Sbjct: 2 IQVYLVDDHPFVLQGLKAYLNTREGIEIVGTSGNGEKAIKEIAKLNPEVAVVDLRLPGLN 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+V ++K+ +II+S+ N DAGA +V K ++ AI+AA+ G Sbjct: 62 GIEVTREIKKKNPGTEVIILSSFNKEDEVIEAIDAGALSYVMKDSRPEKLVEAIKAARRG 121 Query: 120 YCYFPFSLN-RFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTY 178 + + + +K + L+ +E V+ ++ G N DIA+ + IS TV T+ Sbjct: 122 EPVLTPGVAKKIMKRAARKGRKTEPLTPREKEVLACLVRGNSNRDIAKTLCISETTVKTH 181 Query: 179 KSRLMEKLECKSLMDLYTFAQRNKI 203 S +++KL+ K A N + Sbjct: 182 VSNILKKLDVKDRTQAVIKAIENNL 206 >UniRef50_C4V1Z2 Transcriptional regulator n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V1Z2_9FIRM Length = 209 Score = 243 bits (623), Expect = 2e-63, Method: Composition-based stats. Identities = 55/207 (26%), Positives = 96/207 (46%), Gaps = 7/207 (3%) Query: 4 IIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +I+DDH L A I+ LL + AE G A++ + D+VI+D+ +PG+ G+ Sbjct: 1 MIVDDHLLIRAGIKLLLKNTSAYTVTAEAESGEEALRLLAQQPIDLVIMDISMPGMGGLA 60 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 + +R + I+++S D Y GA G++ K N + A++ G Y Sbjct: 61 CIREIRAHYPAVKILVLSMHEDEEYIYKAMQYGAMGYLPKTSADNELFDALQVLSQGRRY 120 Query: 123 FPFSLNRFVGSL------TSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 + + + + + L+ +E V ++ G +IAE++ +S KTV Sbjct: 121 LSPNAQQSLMDIMFRPAEEAADDPRSVLTAREREVFDELIHGYTITEIAEQLHLSVKTVD 180 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKI 203 T+K + EKL C +L T A RN + Sbjct: 181 THKKHIYEKLHCSRRSELVTLALRNGL 207 >UniRef50_C4DI56 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DI56_9ACTO Length = 235 Score = 243 bits (623), Expect = 2e-63, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 99/205 (48%), Gaps = 3/205 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDHP+ ++ L + D+ ++AE +G A+ + +PD+V++D+++PG + Sbjct: 5 IRVLVADDHPIVRQGLKTFLDIQPDLSVVAEARDGDEALALIAAHEPDVVLLDLNMPGSD 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G +VL L + +I++++ + AGA GF+ K +++ AI + +G Sbjct: 65 GAKVLTRLAASDHRAKVIVLTSVTEAVRVTEAVAAGAAGFLYKDIDPDSLAQAIRSVADG 124 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 F + +L+ +E V+ + G+ N +IA+++ ++ KTV T+ Sbjct: 125 QVIFAREA--VTAMTAPAPGPVAALTAREREVLALVAAGRSNREIAKQLSVAEKTVKTHL 182 Query: 180 SRLMEKLECKSLMDLYTFAQRNKIG 204 S L KL +A + + Sbjct: 183 SSLFRKLGVADRTQAALYAVTHGMA 207 >UniRef50_B4D2X8 Two component transcriptional regulator, LuxR family n=2 Tax=Chthoniobacter flavus Ellin428 RepID=B4D2X8_9BACT Length = 242 Score = 243 bits (622), Expect = 2e-63, Method: Composition-based stats. Identities = 51/205 (24%), Positives = 101/205 (49%), Gaps = 7/205 (3%) Query: 2 NAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 +++DDHP + ++ + D+ E + A++ + L PDI +ID+ +PG NG Sbjct: 24 RVLLVDDHPAIRRGMAAIIDEEPDLTTCGEASTAPMALEAMRRLNPDIAVIDISMPGTNG 83 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 +++++ + Q I+++S ++ Y AGA G+V K E + ++ + G Sbjct: 84 VELIKLMLAEQPGLQILMLSMHDESVYALRALRAGAKGYVMKGEALECVLTGLRKVGEGE 143 Query: 121 CYFPFSLNRFV------GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 Y + + ++ +D LS +E V+R + G + +IAE++ +S KT Sbjct: 144 IYVSPKFSDRLIFKTIQSTIAGVASPVDKLSDREFEVLRLLGRGFGSREIAEELSLSVKT 203 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQ 199 V T+++ + EKL K ++ FA Sbjct: 204 VETHRAHIKEKLGFKEAGEMVRFAI 228 >UniRef50_B2JSN3 Two component transcriptional regulator, LuxR family n=28 Tax=Proteobacteria RepID=B2JSN3_BURP8 Length = 210 Score = 243 bits (622), Expect = 2e-63, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 109/206 (52%), Gaps = 3/206 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I DDH + ++ ++ NDI + AE +G V ++ T D++++D+ +PG++ Sbjct: 2 IRILIADDHAIVRGGLKQIIATTNDIVVAAEAAQGSEVVDKLRTCAVDLLLLDMTMPGIS 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ ++ +R Q + ++++S ++ AGA G+++K + ++AAI +G Sbjct: 62 GVDLIRRVRAEQPALPVLVLSIHDEAQVASRALRAGATGYLTKDSDPDVLLAAIRKLADG 121 Query: 120 YCYFPFSL--NRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 + L + D + LS +E V++ + GK N+IA+ +S KT+ST Sbjct: 122 GRFIDPKLVDAMVFETHRGDMPPHEVLSDREFQVLQMLAAGKSINEIADICALSAKTIST 181 Query: 178 YKSRLMEKLECKSLMDLYTFAQRNKI 203 +K RLM+KL + ++ +A R+ + Sbjct: 182 HKMRLMQKLGLANNAEVIRYAIRHGL 207 >UniRef50_Q2BNZ3 Transcriptional regulator, LuxR family protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BNZ3_9GAMM Length = 223 Score = 243 bits (622), Expect = 3e-63, Method: Composition-based stats. Identities = 57/216 (26%), Positives = 115/216 (53%), Gaps = 13/216 (6%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIP--- 56 + +++DDHPL A + LLI ++ IEI+ E G SA + + PD+VI+D+++P Sbjct: 5 IKILLVDDHPLVRAGFQRLLISDESIEIVGEADNGQSACEMYASHMPDVVIMDLNMPSDA 64 Query: 57 ---GVN-----GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNN 108 ++ G++ + + +++++A + H +AGA GF++K+ + Sbjct: 65 NTEEMSNNLNGGLEAIRRIISHDPKAKVLVLTAMEIDPFPAHVVNAGAKGFLTKRCAPDE 124 Query: 109 IIAAIEAAKNGYCYFPFSLN-RFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEK 167 ++ A++A G Y + R ++D L SL+K+E+ + + +G+ + +AE+ Sbjct: 125 LLEAVKAIHAGEEYITEEIRLRITEGGSADGASLASLTKRELQIFSLLAEGRTVSIVAEE 184 Query: 168 MFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 MF+S KTV +++ + KL+ + +L A R+ I Sbjct: 185 MFLSPKTVHAHRTNIFRKLKISNNSELVHLAIRHNI 220 >UniRef50_Q9RU37 DNA-binding response regulator n=3 Tax=Deinococci RepID=Q9RU37_DEIRA Length = 225 Score = 243 bits (622), Expect = 3e-63, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 100/205 (48%), Gaps = 1/205 (0%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH + +R L + IE++ E G A+Q E L+P++V++D+ +P ++ Sbjct: 14 VRVLLVDDHAVVRQGLRLFLGLDEGIEVVGEAANGEEALQEAERLRPEVVVMDLMMPVMD 73 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI LR+R +I +++ + +AGA ++ K + + AI AA G Sbjct: 74 GITATRELRRRLPDTEVIALTSTLEENKVNGAIEAGAISYMLKDASSDTLADAIHAAARG 133 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 R + + +SL+ +E +V++ + G+ N DIA + +S TV T+ Sbjct: 134 EVRLHPEAARRLVRDFRSPEMRESLTPKETAVLQLLARGQSNKDIAAEQGVSEATVKTHV 193 Query: 180 SRLMEKLECKSLMDLYTFAQRNKIG 204 SRL+ KL S +A + I Sbjct: 194 SRLLSKLGLDSRTQAALYALKYGIA 218 >UniRef50_D1CF52 Two component transcriptional regulator, LuxR family n=2 Tax=Bacteria RepID=D1CF52_THET1 Length = 1648 Score = 243 bits (622), Expect = 3e-63, Method: Composition-based stats. Identities = 43/207 (20%), Positives = 94/207 (45%), Gaps = 4/207 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 + +I DDH L I++LL +++ E + G AV+ V L PD+V++D+ +P + G Sbjct: 1439 LRVVIADDHALFRDGIKSLLESEGFQMVGEASNGQEAVELVHNLSPDLVLMDLSMPVMGG 1498 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 + + + + S +I+++A + AGA GF+ K + G Sbjct: 1499 LDAIRLISADKPSVKVIVLTASEEDKDLFEAIKAGAQGFIPKNLESEEFFQLLRNVIRGE 1558 Query: 121 CYFPFSLN-RFVGSLTSD--QQKLDSLSKQEISVMRYILDGK-DNNDIAEKMFISNKTVS 176 L + + + L L+ +E +++ +++G D++ ++ +S TV Sbjct: 1559 PAITPRLAGKLIDEFSRPVRSSSLQMLTDREQEILQLLVNGVTSTKDLSRQLGVSEHTVK 1618 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKI 203 + ++ KL +S + +A ++ + Sbjct: 1619 YHLRNILSKLHLQSRAQVVAWAVQHGL 1645 >UniRef50_B0C955 Two-component transcriptional regulator, LuxR family n=4 Tax=Cyanobacteria RepID=B0C955_ACAM1 Length = 215 Score = 243 bits (621), Expect = 3e-63, Method: Composition-based stats. Identities = 49/207 (23%), Positives = 105/207 (50%), Gaps = 7/207 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DD L + +LL + D+ ++ + +G A+ +TL+PD++++DV +P + Sbjct: 2 IRLLLADDQALFRQGLASLLELEEDLSVVGQAQDGRDAILLTQTLQPDVILMDVRMPICD 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + +R I++++ ++ Y AGA G++ K + + AAI +G Sbjct: 62 GVEATREIHQRFPWIRILVLTTFDEDEYIWTSLQAGALGYLLKSTPASQLAAAIRMLHDG 121 Query: 120 YCYFPFSLNRFVGS------LTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 + ++ V + L ++Q L+ LS +E+ V+ I GK N +I++ + ++ Sbjct: 122 HFQLGPTIAPKVIAQLRPPPLKNEQNHLERLSDRELDVLNLIGQGKSNREISQILHLTEG 181 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQR 200 TV Y S+L+ L + +AQ+ Sbjct: 182 TVKNYVSQLLGSLGVRDRTQAALWAQQ 208 >UniRef50_C6D0G6 Two component transcriptional regulator, LuxR family n=17 Tax=Bacteria RepID=C6D0G6_PAESJ Length = 225 Score = 243 bits (621), Expect = 3e-63, Method: Composition-based stats. Identities = 49/212 (23%), Positives = 105/212 (49%), Gaps = 14/212 (6%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH + + I L + D E++ E G AV++ L+PDIV++D+++P ++ Sbjct: 3 IKILLADDHQIVLKGISFFLAMQPDFELVGEAHNGKEAVEKAGELQPDIVLMDLNMPIMD 62 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ ++++ ++++++ D + GA G++ K + + AI +A G Sbjct: 63 GIEASALIKEQHPHIKVLVLTSFADQSHIVPALQTGAIGYMLKDVEPDQLAEAIRSAYKG 122 Query: 120 YCYFPFSLNRFVGSL-------------TSDQQKLDSLSKQEISVMRYILDGKDNNDIAE 166 ++R + S ++ + L++L+ +E+ V+ + G N DIA+ Sbjct: 123 NIQLHPDISRALLSRPEPEPRPEPVIQHSNRDKSLEALTPRELEVLELLTKGLSNKDIAQ 182 Query: 167 KMFISNKTVSTYKSRLMEKLECKSLMDLYTFA 198 + ++ KTV T+ S ++ KL+ FA Sbjct: 183 TLIVAEKTVKTHVSSILSKLDLSDRTQAALFA 214 >UniRef50_C1A5E6 NarL family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A5E6_GEMAT Length = 213 Score = 243 bits (621), Expect = 4e-63, Method: Composition-based stats. Identities = 51/203 (25%), Positives = 108/203 (53%), Gaps = 3/203 (1%) Query: 2 NAIIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 +++DDH L + LL + +++ E G +AV +E +PD+VI+D+++PG++G Sbjct: 6 RVVLVDDHSLVRRGLAVLLRLDGRHDVVGEAGTGEAAVPLIEAERPDLVILDLNMPGIDG 65 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 ++ L +R + + ++++S ++ AGA+G++ K + + AIE+ G Sbjct: 66 LETLRRVRAKGLTTRVLVLSMHDETHLVGQALSAGADGYLLKDSMDDELFFAIESVLRGQ 125 Query: 121 CYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKS 180 Y +++R L + + SL+ +E V++ I +G + +AE + IS T + +++ Sbjct: 126 RYLAAAIDR--ARLQESRMRPVSLTAREREVLQLIANGLTTSAVAEALNISPHTATRHRA 183 Query: 181 RLMEKLECKSLMDLYTFAQRNKI 203 LM+KL + ++L A + Sbjct: 184 NLMQKLNVHNQVELVRIAASQGL 206 >UniRef50_B6A2W0 Two component transcriptional regulator, LuxR family n=47 Tax=Proteobacteria RepID=B6A2W0_RHILW Length = 223 Score = 243 bits (621), Expect = 4e-63, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 102/205 (49%), Gaps = 2/205 (0%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ID+HPL + ++ +L + IE+ + + ++P +V++D+++P ++ Sbjct: 7 IRVLLIDNHPLVLDGLKAVLETFDHIEVAGTAGLAQTGLDIARQIQPQVVLMDINMPKLS 66 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI +E R ++++S + Y GA G+V K + I+AAIE +G Sbjct: 67 GIDAIELFRNEFPEIRVVMLSMHDSREYISSSVMHGAAGYVLKDVSTDEIVAAIETVADG 126 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 YF + + +++ D L+ +E ++ I+ G+ N +IAE + IS+ T T++ Sbjct: 127 GTYFSSGVFDALMGERAEEGS-DPLTPREHDILGLIVAGRSNREIAEVLGISSATAETHR 185 Query: 180 SRLMEKLECKSLMDLYTFAQRNKIG 204 L +KL + L +A + I Sbjct: 186 KNLKKKLGIATTAGLIRYALDHGIA 210 >UniRef50_B3DW63 DNA-binding response regulator, NarL family (REC-HTH domains) n=7 Tax=Bacteria RepID=B3DW63_METI4 Length = 243 Score = 243 bits (621), Expect = 4e-63, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 97/205 (47%), Gaps = 7/205 (3%) Query: 2 NAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 +I+DDH + + L+ + + + +E PD+V++D+ +PG +G Sbjct: 20 KVLIVDDHAILREGLIQLINSTPGLSVCGAAKNAHEGFELIEKTMPDVVLVDISLPGKSG 79 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 +++++ + ++++S + Y + AGA G++ K EG +IAAI+ G Sbjct: 80 LELIKDIHAAYPDIALLVLSMHEESLYAERVLRAGARGYLMKNEGGQKLIAAIQKVLAGG 139 Query: 121 CYFPFSLNRFVGSLTSDQQ------KLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 + + S ++ +++LS +E V + I G + IAE++ +S KT Sbjct: 140 ISVSERVANRILQGVSGKRKALSISPIEALSDREFEVFQLIGKGYGSRQIAEQLSLSVKT 199 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQ 199 V Y++ + +KL KS L +A Sbjct: 200 VEAYRASIKQKLYLKSGPQLVHYAI 224 >UniRef50_B4CWX5 Two component transcriptional regulator, LuxR family n=3 Tax=Verrucomicrobia RepID=B4CWX5_9BACT Length = 210 Score = 242 bits (620), Expect = 4e-63, Method: Composition-based stats. Identities = 46/204 (22%), Positives = 91/204 (44%), Gaps = 5/204 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH + + + L +++D+ ++ E G AV + PD+V++D+ +PG N Sbjct: 7 IRILVVDDHHVVRSGLAASLGLEDDLNVVGEAGNAGEAVTQFRKHHPDVVLMDLRLPGAN 66 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G LR+ +++ + + AGA G++ K +++AI A G Sbjct: 67 GTAATADLRREWPDARVLMFTTFDGEEDIYRAMQAGARGYLLKSAAREELLSAIRAVAAG 126 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 + +L + + + S +E V++ I GK N +IA + IS +TV + Sbjct: 127 ERHLSAALAQRLAGRVAAPDV----SDREREVLQLIARGKANKEIAAALGISEETVKRHA 182 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 S L K+ + R + Sbjct: 183 SNLFVKMGVADRAQATSEGIRRGL 206 >UniRef50_C4V5Y3 Response regulator n=3 Tax=Selenomonas RepID=C4V5Y3_9FIRM Length = 223 Score = 242 bits (620), Expect = 4e-63, Method: Composition-based stats. Identities = 55/217 (25%), Positives = 104/217 (47%), Gaps = 14/217 (6%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH L I+ +L ++D+E++ E +G A+ R LKPDI+++D+++PG+ Sbjct: 3 IRILLADDHALLRQGIKRVLNFEDDLEVVGEAEDGQEALARTLMLKPDILLLDINMPGLT 62 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ V + L++ + II ++ + Y GA G++ K N +I AI G Sbjct: 63 GLDVAKQLKQARSRVKIIALTIHDSDNYVLELLKNGALGYLLKDVEPNVLIKAIHMVNEG 122 Query: 120 YCYFPFSLNRFVGSLTS-------------DQQKLDSLSKQEISVMRYILDGKDNNDIAE 166 + L + +S D+ + + L+ +E+ V+ I G N DI + Sbjct: 123 NPFVYPKLAERLFGTSSISGDVGRMAKEIWDESRGERLTPREMDVLGCIAKGLSNQDIGK 182 Query: 167 KMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 + +S KTV + + + KL+ + +NKI Sbjct: 183 ALGLSEKTVKNHLTSVFHKLKVNDRTQALVYVLKNKI 219 >UniRef50_Q8YV43 Two-component response regulator n=7 Tax=Bacteria RepID=Q8YV43_ANASP Length = 209 Score = 242 bits (620), Expect = 5e-63, Method: Composition-based stats. Identities = 45/204 (22%), Positives = 97/204 (47%), Gaps = 5/204 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I DDH + + ++ + +++++A+ G + E +PD+ ++D+ +P V Sbjct: 7 IRVLIADDHAIFRQGLATIINRDPEMQVVAQAENGEQVIALFEEHQPDVTLMDLRMPEVE 66 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ + + S II+++ + AGA G++ K+ + ++ AI G Sbjct: 67 GVAAISAICATAKSARIIVLTTYDSDEDIYRGLQAGAKGYLLKETEPDELLNAIRTVHRG 126 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 + Y P + + S+ + LS++E+ V+R + G N DIA+ + I TV ++ Sbjct: 127 HKYIPPDVGAKLVQRLSNPE----LSERELEVLRSLAQGMSNADIADALSIGEGTVKSHV 182 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 +R++ KL+ A + I Sbjct: 183 NRILNKLDVSDRTQAVIVAVKRGI 206 >UniRef50_C7Q6M6 Two component transcriptional regulator, LuxR family n=89 Tax=Bacteria RepID=C7Q6M6_CATAD Length = 225 Score = 242 bits (620), Expect = 5e-63, Method: Composition-based stats. Identities = 51/210 (24%), Positives = 98/210 (46%), Gaps = 6/210 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I DDH + +R L + IE+ E +G +R L+PD++++D+ +PGV+ Sbjct: 8 IRVLIADDHRMVRQGLRTFLELQEGIEVAGEAADGAECAERAAELEPDVILLDLVMPGVD 67 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ +E LR+ + +++V++ D AGA G+V K + AA+ + G Sbjct: 68 GVGAMELLREAGSTARVLVVTSFTDRRMIIPAIRAGARGYVYKDVDPAALAAAVRSVHAG 127 Query: 120 YCYFPFSLNRFV-----GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 + + + + +L+ +E V+ I G+ N +IA + ++ KT Sbjct: 128 HVLLEPEVATALLDSGSNGAADQGPQAPALTAREREVLVLIAQGRANREIARALVLAEKT 187 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQRNKIG 204 V T+ S ++ KL +A R+ I Sbjct: 188 VKTHVSNILMKLGVADRTQAALWAVRHGIA 217 >UniRef50_C0GJ72 Two component transcriptional regulator, LuxR family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJ72_9FIRM Length = 212 Score = 242 bits (620), Expect = 5e-63, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 3/204 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH + +R LL +D +E+ E AV + PD++++D +P + Sbjct: 5 IKVMLVDDHSVVRQGLRLLLELDDTMEVCGEAETLTGAVAVCAEVAPDVILLDFKLPDGD 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI L+++ III++A D AGA+G++ K +I I+A G Sbjct: 65 GIIGCGNLKRQFPQVKIIILTAYADDHLVTETIKAGADGYLLKNVESEELINTIQAVHKG 124 Query: 120 YCYFPFSLNRFVGSLTSDQQK--LDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 S+ + QQ +L+ +E+ ++ I GK N +IAE M IS+KTV Sbjct: 125 QSVLDPSVTEILFDNIKSQQPKKEHNLTPKEVQILDMISVGKANKEIAEIMKISDKTVRN 184 Query: 178 YKSRLMEKLECKSLMDLYTFAQRN 201 Y S +++KL + + ++ RN Sbjct: 185 YVSNILQKLNVSNRTEAASYWMRN 208 >UniRef50_Q4KCH2 DNA-binding response regulator, LuxR family n=1 Tax=Pseudomonas fluorescens Pf-5 RepID=Q4KCH2_PSEF5 Length = 208 Score = 242 bits (619), Expect = 6e-63, Method: Composition-based stats. Identities = 68/204 (33%), Positives = 119/204 (58%), Gaps = 2/204 (0%) Query: 2 NAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGI 61 + +I+DDHP+ AIR L I+ E +G SA+ + +L+PDIVI+DV + ++G+ Sbjct: 4 SVLIVDDHPVVCEAIRKTLESQGYTIVGETADGISALNMILSLRPDIVILDVSLEKMDGL 63 Query: 62 QVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 121 VL+ + + +++ +A++ Y C AGA+GFVSK E + ++ A++ GY Sbjct: 64 TVLKRIAQANLDVRVLVFTAQSVDTYAMRCLQAGASGFVSKNEPLTKLLKAVDTIVEGYV 123 Query: 122 YFPFSLNRFV--GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 +FP F G L +L+ +E+ V++ + +G N +IAEK+ +SNKTVS +K Sbjct: 124 FFPKKSMPFSDGGRGKHSSDVLAALTNRELEVLKLLAEGLTNLEIAEKLHLSNKTVSGHK 183 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 ++ KL S++DL A++N++ Sbjct: 184 INILSKLGVTSVVDLVNIARQNEL 207 >UniRef50_D2AX12 Response regulator receiver protein n=100 Tax=Actinobacteria (class) RepID=D2AX12_STRRD Length = 239 Score = 242 bits (618), Expect = 7e-63, Method: Composition-based stats. Identities = 51/212 (24%), Positives = 88/212 (41%), Gaps = 9/212 (4%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I+DD PL + +L E++ E G AV L+PD+V++D+ +P ++ Sbjct: 11 IRVLIVDDQPLVRRGLSLILSPDPSFEVVGEAENGAQAVTLARRLRPDVVVMDIRMPVLD 70 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ L ++ +S + Y AGA GF+ K ++ AAI G Sbjct: 71 GVGATRELAATVPDCRVLALSTFDLDEYVVGALRAGAYGFLPKDSSPEDLSAAIRTVHAG 130 Query: 120 YCYF-PFSLNRFVGS-------LTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFIS 171 P L R + + L L+ +E+ V R + G DN I+ + IS Sbjct: 131 EAAVAPRLLTRLISTYVRAPHGTRPTPTGLGELTPREVEVWRLMATGLDNTGISRTLDIS 190 Query: 172 NKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TV Y + + +KL + A + + Sbjct: 191 LSTVKNYITSIFDKLAVRDRAQAVIVAYESGL 222 >UniRef50_D1CI66 Two component transcriptional regulator, LuxR family n=3 Tax=Bacteria RepID=D1CI66_THET1 Length = 218 Score = 242 bits (618), Expect = 8e-63, Method: Composition-based stats. Identities = 48/209 (22%), Positives = 103/209 (49%), Gaps = 6/209 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 M +I DDH L ++R LL +E++ E G AV+ L+PD+V++D+ +PG++G Sbjct: 1 MRVLIADDHALFRDSLRTLLEARGVEVVGEAETGKEAVELARELRPDVVLMDLKMPGMDG 60 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 + + +++++A D +GA G++ K + +EAA G Sbjct: 61 LAATRMISAEMPEVKVVVLTASEDDEDLFEAVKSGALGYMFKDVRSDQFFELLEAASRGE 120 Query: 121 CYFPFSLNRFVGSLTS-----DQQKLDSLSKQEISVMRYILDGK-DNNDIAEKMFISNKT 174 F L R + S +++ + L+++E ++ ++ G N ++AE++ +S T Sbjct: 121 PAFTPGLARKLLREMSKPAGRAEREPEVLTEREQEILELLVQGVTSNKELAERLILSENT 180 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 V + +++KL ++ + +A ++ + Sbjct: 181 VKYHLRNILDKLHLQNRTQVVAYALQHGL 209 >UniRef50_Q52376 Response regulator gacA n=286 Tax=Gammaproteobacteria RepID=GACA_PSEU2 Length = 214 Score = 242 bits (618), Expect = 8e-63, Method: Composition-based stats. Identities = 51/208 (24%), Positives = 106/208 (50%), Gaps = 5/208 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH L I +L + ++++ + G ++++ LKPD+V++DV +PG+ Sbjct: 2 IKVLVVDDHDLVRTGITRMLADIDGLQVVGQADSGEESLKKARELKPDVVLMDVKMPGIG 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + + ++ V+ + + AGA G+++K G+ ++ AI G Sbjct: 62 GLEATRKMLRSHPDIKVVAVTVCEEDPFPTRLLQAGAAGYMTKGAGLAEMVQAIRLVFAG 121 Query: 120 YCYFPFSLNRFVGSLTSDQQ----KLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 Y + + + + Q D LS++EI + I+ + I++K+ +S KTV Sbjct: 122 QRYISPQIAQQLALKSFQPQVNNSPFDLLSEREIQIALMIVGCQKVQTISDKLCLSPKTV 181 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKI 203 +TY+ R+ EKL S ++L A R+ + Sbjct: 182 NTYRYRIFEKLSISSDVELALLAVRHGM 209 >UniRef50_Q11YW8 Two component transcriptional regulator, LuxR family n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11YW8_CYTH3 Length = 215 Score = 241 bits (617), Expect = 9e-63, Method: Composition-based stats. Identities = 61/210 (29%), Positives = 111/210 (52%), Gaps = 7/210 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 ++ II DDH L I++LL ++ E++ E T+G +Q ++TL P+IV++D+ +P + Sbjct: 5 ISIIIADDHTLIRDGIKSLLQSVDEFEVVGEATDGDELIQFIDTLDPEIVVLDITMPKKS 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+V+ ++K I++S ++ Y +GA ++ K II A++A G Sbjct: 65 GIEVITEVKKYNNRVKFIVLSMHDNPEYVLKSVQSGALSYLLKNTDHEEIIKAVKAVSAG 124 Query: 120 YCYFPFSLNRFV------GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 YF + + L Q ++L+K+E+ V++ + G IA+K+FIS + Sbjct: 125 QKYFSPDIYSIILNGLANPELVKASQIAETLTKRELEVLKEVSMGLSTKLIADKLFISVR 184 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TV T++ LM+KL+ + +L A I Sbjct: 185 TVETHRINLMKKLDVHNSAELIKKAMDLNI 214 >UniRef50_Q60AR8 DNA binding response regulator, LuxR family n=1 Tax=Methylococcus capsulatus RepID=Q60AR8_METCA Length = 215 Score = 241 bits (617), Expect = 9e-63, Method: Composition-based stats. Identities = 50/208 (24%), Positives = 101/208 (48%), Gaps = 5/208 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH + A R LL +IE++ E G A Q +PD++++D+ +PG+ Sbjct: 5 ITVMLVDDHAVVRAGYRLLLSGTPNIEVVGEAERGEEACQLYADTRPDVIVMDLSLPGIG 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ + +R R S I++ S ++ Y +AGA G+++K ++ A+ +G Sbjct: 65 GLASIRRIRSRDTSARILVFSIHDELIYVVRALEAGARGYITKSCAPEILVEAVARIASG 124 Query: 120 YCYFPFSLNRFVGSLT----SDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 + + + + T L++LS +E V + G ++AE++ + KTV Sbjct: 125 ESFLEPEIAQRLAMQTLGGAEATTALNTLSAREFDVFLLLAKGYTTREVAEELRLGYKTV 184 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKI 203 + Y + + KL + ++ A +N I Sbjct: 185 ANYSTLIKSKLGVNTTAEMARLAYQNGI 212 >UniRef50_Q39C19 Two component transcriptional regulator, LuxR family n=60 Tax=Betaproteobacteria RepID=Q39C19_BURS3 Length = 271 Score = 241 bits (617), Expect = 1e-62, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 106/207 (51%), Gaps = 4/207 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKNDI-EILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 +N +++DDH + IR LLI + + E GG AV V+ + D++++D+ +P N Sbjct: 3 LNILLVDDHAIVRQGIRQLLIDRGVARDVTEAENGGDAVAAVDKQEFDVILLDISLPDTN 62 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+VL+ L+++ +++ S + Y AGA G++SK +I AI+ G Sbjct: 63 GIEVLKRLKRKLPRTPVLMFSMYREDQYAVRALKAGAAGYLSKTVNAAQMIGAIQQVAAG 122 Query: 120 YCYFPFSLNRFVG---SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 Y ++ + S ++ + LS +E + + GK DIA + +S KTVS Sbjct: 123 RKYVSPAMAEALAEYVSFENEPLPHEKLSDREYQTLCMLASGKRLTDIANTLSLSVKTVS 182 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKI 203 Y+SRL+EK+ + +L + N++ Sbjct: 183 VYRSRLLEKMRLSNNAELTFYVMSNRL 209 >UniRef50_A4XCA4 Response regulator receiver n=3 Tax=Actinomycetales RepID=A4XCA4_SALTO Length = 235 Score = 241 bits (617), Expect = 1e-62, Method: Composition-based stats. Identities = 52/213 (24%), Positives = 111/213 (52%), Gaps = 9/213 (4%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DD PL +A+R ++ + +D+ I E G AV+ LKPD+V++D+ +PG+ Sbjct: 3 IEVLVVDDQPLVRSALRMVVAEVDDMVIAGEAETGEEAVRLTRELKPDVVLMDLRMPGMG 62 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ + + +++++ ++ + AGA GF+ K +++I+ A+ +G Sbjct: 63 GIEATGQIVRLSPETRVLVLTTFDEDDHVFGALQAGAAGFLIKNMSLDDILDAVRTVAHG 122 Query: 120 YCYFPFSLNRFV--------GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFIS 171 S+ R + + T ++ L ++++E V+ + G N++IA+++ +S Sbjct: 123 NGLLAPSVTRRLIKHVVDTRTAPTVPRRPLSGITEREREVLTLVGRGLSNSEIADELRLS 182 Query: 172 NKTVSTYKSRLMEKLECKSLMDLYTFAQRNKIG 204 + TV TY +RL+ KL + + L A + Sbjct: 183 HATVKTYITRLLSKLGARDRVHLVIAAYEAGLA 215 >UniRef50_A1VT42 Two component transcriptional regulator, LuxR family n=7 Tax=cellular organisms RepID=A1VT42_POLNA Length = 224 Score = 241 bits (617), Expect = 1e-62, Method: Composition-based stats. Identities = 51/208 (24%), Positives = 97/208 (46%), Gaps = 5/208 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETL----KPDIVIIDVDI 55 + I++DDHP +R L +DI ++ E A+Q L P IV+ D+ + Sbjct: 5 IRLILVDDHPFVRDGVRMRLEATDDIRVVGEAGSVDEAMQLATDLGDERAPHIVLTDISM 64 Query: 56 PGVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEA 115 G++GI++ + R ++++S N+ Y K ++GA G+V K ++ AI A Sbjct: 65 RGMSGIELAALFQHRFPGIDVLVLSMHNNLEYVKRAIESGAKGYVLKDAPAQELVNAIRA 124 Query: 116 AKNGYCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 G +F L ++ + L+ +E + + ++ G N IA ++ +S +TV Sbjct: 125 VHAGETFFSPELQQYTEGFRASSGGNSPLTPKESATLAWLACGYSNKQIARELSMSVRTV 184 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKI 203 T++ L KL +L +A + + Sbjct: 185 ETHRLNLRRKLRITGQAELVKYAIDHML 212 >UniRef50_A5V148 Two component transcriptional regulator, LuxR family n=2 Tax=Bacteria RepID=A5V148_ROSS1 Length = 216 Score = 241 bits (617), Expect = 1e-62, Method: Composition-based stats. Identities = 45/209 (21%), Positives = 100/209 (47%), Gaps = 6/209 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 ++ +I++D L +R +L ++ I ++ E +G V+ L+PDI+++DV +P +N Sbjct: 6 ISILIVEDQTLMRQGLRTILDLEESIRVVGEARDGAEGVREALRLRPDIILMDVQMPVMN 65 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + + II+++ + Y AGA G++ K ++ I G Sbjct: 66 GVEAIRAIIAAWSQARIIVLTTFDRDDYVFQSVRAGAMGYLLKDAPAEALLQTIRRVHAG 125 Query: 120 YCYFPFSLN-RFVGSLTSDQQKLDS----LSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 + + R + + +++ + LS++E V+ + G N +IA ++ I+ T Sbjct: 126 EVFIQPEIASRTLREAATGRRRAGTIPFDLSEREREVLVLLAQGLSNREIAGRLSITEGT 185 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 V + S ++ KL+ ++ A+R + Sbjct: 186 VKNHVSNILAKLQAENRTQAANIARREGL 214 >UniRef50_C3BET8 Putative uncharacterized protein n=15 Tax=Bacillus RepID=C3BET8_9BACI Length = 216 Score = 241 bits (616), Expect = 1e-62, Method: Composition-based stats. Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 12/212 (5%) Query: 4 IIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +I+DD L + LL +++++E++ +G V+ E L+P+I+++D+ +P +NG++ Sbjct: 1 MIVDDQSLIRDGLAMLLNLRSELEVVGTANDGDEVVRIAEQLQPEIILMDIRMPRINGVE 60 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 +R+R +++++ ND + GA+G++ K + I+ AI G Sbjct: 61 GTRLIRERFPDMKVLMLTTFNDSELIFEALEQGASGYLLKDMETDAIVQAILTVHAGGAV 120 Query: 123 FPFSLNRFV-----------GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFIS 171 P + + S + ++++ L+++EI V+R I G +N +IAEK+FI+ Sbjct: 121 LPQDITAQIVKELKRTKVVEISGQNQPKQVEQLTEREIDVLREIGLGLNNKEIAEKLFIT 180 Query: 172 NKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TV + S L+ KLE + +A R I Sbjct: 181 EGTVKNHVSNLISKLELRDRTQAAIYAVRYGI 212 >UniRef50_D1C6S1 Two component transcriptional regulator, LuxR family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C6S1_SPHTD Length = 223 Score = 240 bits (615), Expect = 2e-62, Method: Composition-based stats. Identities = 46/211 (21%), Positives = 100/211 (47%), Gaps = 8/211 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 ++ +++DDH L + +LL + D ++ E G AV+R L PD+V++D+D+PG++ Sbjct: 4 ISLLLVDDHALFREGLASLLSYQPDFTVVGEAASGEEAVERARELVPDVVLMDIDLPGID 63 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ ++++ +++++ +DH AGA G++ K ++ + G Sbjct: 64 GIEATRRIKRQLPEVRVVMLTVYDDHERLFQSIKAGAQGYLIKNIRSAELLDQLRGLARG 123 Query: 120 YCYFPFSL-NRFVGSLTSDQQKLD------SLSKQEISVMRYILDGKDNNDIAEKMFISN 172 + R + +++ + LS +E+ V+ + N +IA ++ IS Sbjct: 124 EAAISRRMAARILEEFARLERQAEILEPDGGLSPREVEVLELVALRLSNKEIAARLSISE 183 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TV + ++ KL+ S +A + + Sbjct: 184 HTVKNHLKNILAKLQLSSRRQAAAYAVAHGL 214 >UniRef50_C5VAN3 Two component transcriptional regulator, LuxR family n=2 Tax=Corynebacterium matruchotii RepID=C5VAN3_9CORY Length = 215 Score = 240 bits (615), Expect = 2e-62, Method: Composition-based stats. Identities = 52/209 (24%), Positives = 105/209 (50%), Gaps = 6/209 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I DD L A + +L + DIE++ E + G A+ + L+PD+V +D+ +PG + Sbjct: 5 IRVVIADDEALIRAGLATILQASGDIEVIGEASTGEEALTVAQRLQPDVVCMDIRMPGGD 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ +++ + + +I+++ + Y +AGA G + K M +++ + A G Sbjct: 65 GLEATRRIQQLEPAPAVIVITTFDMDEYVFGALEAGACGILLKDSSMTDLVEGVRRAALG 124 Query: 120 YCYFPFSLNRFVGSLTSDQQKL-----DSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 SL R V + + ++ + + L+ +E+ + + G NN+IA +F+ T Sbjct: 125 EGLVDASLTRRVIAEFTRRKSIFTSSSEVLTPRELDCVAQLCQGMSNNEIATTLFLEPST 184 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 V T+ S M K + + L +A RN + Sbjct: 185 VKTHLSSAMAKTGTHNRVQLVIWAFRNGV 213 >UniRef50_A2SLK8 Two component transcriptional regulator, LuxR family n=3 Tax=Burkholderiales RepID=A2SLK8_METPP Length = 226 Score = 240 bits (615), Expect = 2e-62, Method: Composition-based stats. Identities = 54/222 (24%), Positives = 102/222 (45%), Gaps = 19/222 (8%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVET-----LKPDIVIIDVD 54 + +I DDH + I+ +L DI + E G A+ V PD+V++D+ Sbjct: 2 IRVVICDDHVIVRQGIKQILADAGDIALAGEAGNGPDAMTLVRAGAAAGTPPDVVLLDIA 61 Query: 55 IPGVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIE 114 +P +G+ VL++L+ ++++S D Y GA G+++K +I AI Sbjct: 62 MPQRDGLDVLKSLKAEFPRLPVLMLSTYPDRQYAVRSLKLGAAGYLNKSADSEQMIDAIR 121 Query: 115 AAKNGYCYFPFSLNRFVGSLTS-------------DQQKLDSLSKQEISVMRYILDGKDN 161 G + S+ + + + LS +E V + GK Sbjct: 122 RVAQGKLFITPSVAEQLAGAVGAGIGSRKGGVGDDEAPLHERLSHREYQVFGLLAAGKSV 181 Query: 162 NDIAEKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 +IAE++ +S+ TVSTY++R++EK ++ ++L +A R ++ Sbjct: 182 GEIAEQLVLSSNTVSTYRARILEKTGVRNDVELALYAVRQEL 223 >UniRef50_C4DCK3 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=3 Tax=Actinomycetales RepID=C4DCK3_9ACTO Length = 214 Score = 240 bits (614), Expect = 2e-62, Method: Composition-based stats. Identities = 56/209 (26%), Positives = 101/209 (48%), Gaps = 7/209 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DD L A +R L DIE++ E G +AV+ L PD+V++D+ +PG++ Sbjct: 2 IRVLLVDDQRLIRAGLRMLCEPAADIEVVGEADGGQAAVRLAGELCPDLVLMDLRMPGMD 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI + + + S ++ ++ +D + AGA GF+ K N ++ AI A +G Sbjct: 62 GITATQRILAERPSTRVVALTTFDDDDHLYPALAAGACGFLVKDTSPNELLEAIRKAADG 121 Query: 120 YCYFPFSLNRFV------GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 F + + + + L L+ +E V+ + G N DIAE++ + Sbjct: 122 DTPFSAGVVKRIVDSAVRARASVPTATLPKLTTREREVLALVGAGYANVDIAERLHLGVT 181 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQRNK 202 TV T+ + LM K C + + L A R+ Sbjct: 182 TVKTHIASLMTKTGCSNRVRLAVLAVRSG 210 >UniRef50_A0K2I9 Two component transcriptional regulator, LuxR family n=5 Tax=Actinomycetales RepID=A0K2I9_ARTS2 Length = 250 Score = 240 bits (614), Expect = 2e-62, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 104/236 (44%), Gaps = 33/236 (13%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DD PL R +L ++D+ I+ E ++G A+++V + PD+V++DV +P ++ Sbjct: 7 IKVLLVDDQPLLRMGFRLILEGEDDLRIVGEASDGAEAIRQVREVDPDVVLMDVRMPVLD 66 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ + +II++ + Y AGA+ F+ K + +++A+ +G Sbjct: 67 GIEATRAVTSSGSHAKVIILTTFDLDEYAFAGLQAGASAFLLKDVAPSELVSAVRVVASG 126 Query: 120 YCYFPFSLNRFV--------------------------------GSLTSDQQKLDSLSKQ 147 + R + G L++L+ + Sbjct: 127 DAVVAPRVTRRLLEAYVREGNPPAVNGQRAGTSAPAAGRGRHSLGEEQQRDPLLEALTPR 186 Query: 148 EISVMRYILDGKDNNDIAEKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 E+ ++ + +G N +IA + F+S TV T+ R++ KL + + +A + Sbjct: 187 EMEMLEAMAEGLSNAEIAHRFFLSEATVKTHVRRILAKLHLRDRVQAVVYAYETGL 242 >UniRef50_P0C0Z1 Response regulator protein vraR n=123 Tax=Firmicutes RepID=VRAR_STAA1 Length = 209 Score = 240 bits (614), Expect = 2e-62, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 100/205 (48%), Gaps = 2/205 (0%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + + +DDH + I + L ++DIE++ E G A+ + LKPD++++D+ + ++ Sbjct: 3 IKVLFVDDHEMVRIGISSYLSTQSDIEVVGEGASGKEAIAKAHELKPDLILMDLLMEDMD 62 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ ++K ++++++ + DAG + ++ K +I A+ G Sbjct: 63 GVEATTQIKKDLPQIKVLMLTSFIEDKEVYRALDAGVDSYILKTTSAKDIADAVRKTSRG 122 Query: 120 YCYF-PFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTY 178 F P L + + + + L+++E+ ++ I G N +IA I+ KTV T+ Sbjct: 123 ESVFEPEVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTH 182 Query: 179 KSRLMEKLECKSLMDLYTFAQRNKI 203 S ++ KLE + +A ++ + Sbjct: 183 VSNILSKLEVQDRTQAVIYAFQHNL 207 >UniRef50_A1WT06 Two component transcriptional regulator, LuxR family n=1 Tax=Halorhodospira halophila SL1 RepID=A1WT06_HALHL Length = 216 Score = 240 bits (614), Expect = 2e-62, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 102/207 (49%), Gaps = 4/207 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH L AI +L DI+I+A AV V +PD+V++D+ +PG+ Sbjct: 2 IRVVLADDHRLIRQAIDGMLRDIPDIQIVAHAENAEHAVAAVREQEPDVVLMDLQMPGMG 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + L + +I ++ Y H AGA G+V K + +I AI + G Sbjct: 62 GVEAIRRLYRSHPKVGVIALTVYQSGPYPAHALRAGAKGYVHKGADRDELIEAIRSVYLG 121 Query: 120 YCYFPFSLNRFVGSLTSD---QQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 Y + R V + D + D L+ +E V+ IL+G+ IA+ + +S KTVS Sbjct: 122 RRYICHEVARHVALNSLDGTGESPFDHLTPREFEVLMRILNGQRGTSIAKDLCLSPKTVS 181 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKI 203 TY+SR+ E+L ++ L A + Sbjct: 182 TYRSRIFERLGVRNDAQLTRIAIDYGL 208 >UniRef50_C0N7Q7 Sigma-70, region 4 family n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N7Q7_9GAMM Length = 226 Score = 240 bits (614), Expect = 2e-62, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 107/206 (51%), Gaps = 3/206 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH + R+LL K D +E++AE +G A + + +PDIV++D+ +PG + Sbjct: 5 ITIMLVDDHAIVREGYRSLLQKQDNLEVIAEACDGTEAYSQYKKYQPDIVVMDISLPGQS 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ +E +R+ I++ S + + AGA G+++K ++I AI Sbjct: 65 GLKAIERIRQFDAKAKILVFSMHQNPSFALQATRAGALGYITKSSDPEDLIRAIAEVAKN 124 Query: 120 YCYFPFSLNRFVG--SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 + + + L +Q LD L+ +E ++R ++D K N DIAE + IS KTVS Sbjct: 125 KHTLSADIAQALAMEKLGQEQSALDELTVREFEILRLLVDAKSNQDIAELLNISPKTVSN 184 Query: 178 YKSRLMEKLECKSLMDLYTFAQRNKI 203 + +KL S ++L A + + Sbjct: 185 SHYIIKKKLGVSSDIELTRLAIKMNL 210 >UniRef50_A5D0L7 Response regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D0L7_PELTS Length = 223 Score = 240 bits (614), Expect = 2e-62, Method: Composition-based stats. Identities = 49/210 (23%), Positives = 100/210 (47%), Gaps = 7/210 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 + +++DD PL ++R L +DI ++ E + G A++ + LKP ++++DV++P ++G Sbjct: 9 IQLLLVDDDPLVRRSLRMLFELHDINVVGEASNGEEALKAIARLKPTMILMDVNMPKMDG 68 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 IQ L+ ++ +II++ N H G + +V K +I +E+ G Sbjct: 69 IQALKAIKTNYPDIQVIILTVHNQHEKVVQAIRDGCSAYVLKDSPPEQLIEVVESVAEGR 128 Query: 121 CYFPFSLNRFV-------GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 + S+ + + L L+ +E V++ I++G N +IA K+ I+ + Sbjct: 129 YFVDTSIANELLVNLVQGTPRRQHPKNLPLLTLREKEVLQLIVNGLSNKEIAGKLNITLR 188 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TV + S ++ KL A + + Sbjct: 189 TVKAHVSSILMKLNVNDRTQAAVLAIQENL 218 >UniRef50_C9M8B3 DNA-binding response regulator, LuxR family n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M8B3_9BACT Length = 212 Score = 240 bits (614), Expect = 2e-62, Method: Composition-based stats. Identities = 48/204 (23%), Positives = 104/204 (50%), Gaps = 4/204 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + I+ DDHPL ++ L + ++ ++ E +G A + +E LKPD+ ++D+ +PG + Sbjct: 4 IRVILADDHPLTRQGLKAYLEREENVALVGEAADGDEAWKLIEELKPDVALLDIRMPGAD 63 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI + +++ + I++++ + Y AGA GFV K ++ AI+ G Sbjct: 64 GITLARRIKENKLPVAAIMLTSYDSQQYVLASLKAGAKGFVLKTTSAGALMKAIQTVATG 123 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 + + VG+ ++ ++LS +E V+ G + ++A +++IS +TV T+ Sbjct: 124 SLFLDSEVASVVGA---QEELTEALSPREREVLLCAARGLSSKEVAAQLYISERTVQTHL 180 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 + + +KL + + A ++ + Sbjct: 181 ASVYDKLGAHNKTEAMLLALKHGL 204 >UniRef50_C4L5Q6 Two component transcriptional regulator, LuxR family n=2 Tax=Bacillales RepID=C4L5Q6_EXISA Length = 230 Score = 240 bits (614), Expect = 2e-62, Method: Composition-based stats. Identities = 55/220 (25%), Positives = 103/220 (46%), Gaps = 19/220 (8%) Query: 2 NAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 I+DDH L ++ + ++++ ++AE G A++ KP+I+I+D+++P +NG Sbjct: 7 RIAIVDDHELFREGLKRIFDLEDEFTVVAEGRTGREAIRIAGEQKPEILIMDINMPDMNG 66 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 I+ + L ++I+S +D Y H +AGA+GF+ K+ +I+A+ A Sbjct: 67 IEATKQLSLLSPETRVLILSIHDDESYITHALEAGASGFLLKEVASTELISAVRAVAKDG 126 Query: 121 CYFPFSLNRFVG------------------SLTSDQQKLDSLSKQEISVMRYILDGKDNN 162 Y + V +D LS++E+ V+ + DG+ N Sbjct: 127 AYLHPKVTTNVLKEYRRLLQFKGEQAGRGVESRTDDPVYQLLSRREVEVLHLLADGRSNR 186 Query: 163 DIAEKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNK 202 DI++ +FIS KTV + S ++ K++ A R Sbjct: 187 DISDMLFISEKTVKNHVSSVLRKMDVNDRTQAVVDAIRRG 226 >UniRef50_B6JD38 Two component transcriptional regulator, LuxR family n=1 Tax=Oligotropha carboxidovorans OM5 RepID=B6JD38_OLICO Length = 210 Score = 240 bits (614), Expect = 2e-62, Method: Composition-based stats. Identities = 59/208 (28%), Positives = 111/208 (53%), Gaps = 5/208 (2%) Query: 2 NAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 II DDH + +R +L + ND ++ E T G + R+ DIV++D+ +PG++G Sbjct: 3 RIIIADDHTIFREGLRQILAEANDFTLVGEATNGDDLLVRLREAPCDIVLLDLSMPGISG 62 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 I ++ R+ + II++S +H Y AGA+G+V+K + +IAAI G Sbjct: 63 ITLVRAAREIAGAHRIIVLSMHEEHQYVVEALKAGADGYVTKNSASDQLIAAIRKVSQGE 122 Query: 121 CYFPFSLNR--FVGSLTSDQQKLD--SLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 + + ++ + + + +L L+++E V ++ G + IA + +S KTVS Sbjct: 123 LFVSAAASQEAILREMRTSPTELPHTRLTRREREVFDMLVAGHKISRIARDLDLSIKTVS 182 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKIG 204 T+K+ L+ K++ ++ DL +A R+ +G Sbjct: 183 THKTNLLAKMDAETTADLVRYALRHDLG 210 >UniRef50_B8FX94 Two component transcriptional regulator, LuxR family n=2 Tax=Desulfitobacterium hafniense RepID=B8FX94_DESHD Length = 212 Score = 240 bits (613), Expect = 3e-62, Method: Composition-based stats. Identities = 52/207 (25%), Positives = 103/207 (49%), Gaps = 4/207 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I DDHPL +R +L + I+++ E+ +G A+ TL DI+++D+++PGVN Sbjct: 2 IRVVIADDHPLLREGLRRILEFEEGIQVVCEVGDGQGAINVSRTLDFDILLMDLNMPGVN 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ +R+ + I++++ + G G++ K +I +I +G Sbjct: 62 GLEACRVIRRENETIGILVLTVDDSDEKVFQVLQLGVAGYLLKDVDPKTLIDSIRKVHSG 121 Query: 120 YCYFPFSLN-RFVGSLTSDQQKLDS--LSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 ++ + +G L Q D+ LS +E+ ++ Y++ G N +I + +FIS KTV Sbjct: 122 QPILSPAVTGKLLGQLVHPTQNRDTCGLSDRELQILTYVVKGSSNREIGQALFISEKTVK 181 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKI 203 + S + KL + A + K+ Sbjct: 182 NHLSSIFRKLAVEDRTQAALKAVKLKL 208 >UniRef50_A6BYP5 Response regulator receiver domain protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6BYP5_9PLAN Length = 221 Score = 240 bits (613), Expect = 3e-62, Method: Composition-based stats. Identities = 50/206 (24%), Positives = 106/206 (51%), Gaps = 7/206 (3%) Query: 2 NAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 +I+DDHP+ L+ ++D+++ E A++++ PD++I+D+ + +G Sbjct: 10 KVMIVDDHPIVREGYSRLIEHQDDLQVCGEADSKVDAIRKIMENPPDLIIVDISLKDGSG 69 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 +++++ ++ + ++ VS ++ + + AGA G+V+K++ +I AI G Sbjct: 70 LELIKDVKAQFSQIKMLTVSMHDETLFAERSLRAGALGYVNKQQAPEQLIKAIYQVLKGK 129 Query: 121 CYFPFSLNRFV------GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 Y ++ + SDQ ++SLS +E+ V I +G+ IA+K+ +S+KT Sbjct: 130 VYLSAAVTERMICRSIGSDNYSDQSPIESLSDRELEVFEQIGEGETTRSIAQKLNLSSKT 189 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQR 200 V TY+ + KL ++ L A + Sbjct: 190 VETYRENIKHKLNLENATALTRHAIQ 215 >UniRef50_C6CZA5 Two component transcriptional regulator, LuxR family n=4 Tax=Firmicutes RepID=C6CZA5_PAESJ Length = 221 Score = 240 bits (613), Expect = 3e-62, Method: Composition-based stats. Identities = 53/210 (25%), Positives = 103/210 (49%), Gaps = 8/210 (3%) Query: 1 MNAIIIDDHPLAIAAIRN-LLIKNDIEILAELTEGGSAVQRVETLKP----DIVIIDVDI 55 + +I+DDH + +R L+++ E++AE G +A+ +E P D++++D+ + Sbjct: 7 LKVMIVDDHDMVRTGLRTYLMLEPKFEVVAEAGSGQAAISMLEAGLPSGLPDVILMDLMM 66 Query: 56 PGVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEA 115 PG++GI+ L + II++++ + +AGA +V K +I A+ Sbjct: 67 PGMDGIETTRQLIVEYPNLKIIMLTSFLEDDKVYGAIEAGAVSYVLKTVSAEELIYALHG 126 Query: 116 AKNGYCYFPFSLNRFVG---SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 A G +++ + + Q + L+++E V+ I +G+ N +I E++ IS Sbjct: 127 AVKGMPVMTADVSQALTRGLRQRTAQSGDEELTEREKEVLLLIAEGRSNKEIGEELHISV 186 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNK 202 KTV T+ S L+ K E + L A R Sbjct: 187 KTVKTHVSNLLMKCELEDRTQLAVLAHRKG 216 >UniRef50_Q39TN7 Two component transcriptional regulator, LuxR family n=1 Tax=Geobacter metallireducens GS-15 RepID=Q39TN7_GEOMG Length = 210 Score = 240 bits (613), Expect = 3e-62, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 105/206 (50%), Gaps = 4/206 (1%) Query: 2 NAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 ++ DDH + ++ ++ D+ ++ E +G + +++ D+VI+D+ +PG NG Sbjct: 4 RILVADDHAIFREGLKQVIGTTVDMSVVDEAVDGKELLNKIQANDYDMVILDITMPGRNG 63 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 + VL ++ + ++++S + Y +GA G+++K N ++ A+ G Sbjct: 64 LDVLTEMKSIKPKLPVLVMSMHPEEQYALRAYKSGAAGYLNKGSASNELLDALHKISMGK 123 Query: 121 CYFPFSLNRFVGSLTSD---QQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 Y +L + S SD Q L SLS +E VM I GK IA ++ +S KTVST Sbjct: 124 KYVSSALAESLVSGLSDHNQQDLLQSLSNREYQVMSMIASGKTVGKIATELSLSVKTVST 183 Query: 178 YKSRLMEKLECKSLMDLYTFAQRNKI 203 Y++ ++ KL K+ +L F NK+ Sbjct: 184 YRAHILRKLNMKNNAELTRFVIENKL 209 >UniRef50_C1TL94 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TL94_9BACT Length = 215 Score = 240 bits (613), Expect = 3e-62, Method: Composition-based stats. Identities = 57/210 (27%), Positives = 102/210 (48%), Gaps = 7/210 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + II DDH L + +R++L ++D+++LA G A++ PD+V++DV +P +N Sbjct: 2 IPLIIADDHELFLEGVRDILSREDDLDVLALARTGQEALELTLQHHPDVVVMDVTMPKMN 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ ++ I+ +S D AGA+G+ K+ +I AI +G Sbjct: 62 GIEASRRIKSSLGDVKILALSMHADKRLIAEILKAGASGYALKEGSSEELIRAIHIVSSG 121 Query: 120 YCYFPFSLNRFVGS------LTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 Y + + T+ + LS +E V+ + G ++A + IS Sbjct: 122 ETYLSPKIASILIKDYLKLLDTAVPSRASLLSDREREVLALLAKGSSTKEVASSLHISKN 181 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TV T++ R+MEKL+C ++ +L FA R + Sbjct: 182 TVDTHRRRIMEKLDCGNIAELIRFAIREGL 211 >UniRef50_B3RA82 Response regulator protein; Response regulator receiver domain, HTH LuxR domain; higly similar to B. subtilis Transcriptional regulatory protein degU (Protease production enhancer protein) n=1 Tax=Cupriavidus taiwanensis RepID=B3RA82_CUPTR Length = 223 Score = 240 bits (613), Expect = 3e-62, Method: Composition-based stats. Identities = 46/200 (23%), Positives = 92/200 (46%), Gaps = 1/200 (0%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDHP + +R L + ++ + A+ PD+V+ D+ +P N Sbjct: 5 LRVLLVDDHPFVLDGVRLRLEATGEMTVIGQAASVEEAIVLAGRHAPDLVVSDIHMPDAN 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+Q+ ++ S +I +S D Y + G +V K+ + ++ AI G Sbjct: 65 GLQLAARFAEQFPSVRVIALSMHKDPEYVRRAFALGVAAYVLKEAPAHELVTAIRTVAAG 124 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 Y L F+ + +L+ +E +V++ + +G+ N +IAE++ S +TV T++ Sbjct: 125 GTYLNAELQAFLHTDEPPPSSRRALTPKEATVLKLLAEGRSNKEIAERLGTSVRTVETHR 184 Query: 180 SRLMEKLECKSLMDLYTFAQ 199 L KL +L +A Sbjct: 185 LHLRRKLRVGGRAELVKYAV 204 >UniRef50_P0A4H3 Virulence factors putative positive transcription regulator bvgA n=56 Tax=Proteobacteria RepID=BVGA_BORBR Length = 209 Score = 240 bits (613), Expect = 3e-62, Method: Composition-based stats. Identities = 70/206 (33%), Positives = 121/206 (58%), Gaps = 3/206 (1%) Query: 2 NAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGI 61 +IIDDHP+ A+R L+ K E++ E G ++ P++V++D+ IP ++G+ Sbjct: 4 KVLIIDDHPVLRFAVRVLMEKEGFEVIGETDNGIDGLKIAREKIPNLVVLDIGIPKLDGL 63 Query: 62 QVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 121 +V+ L+ +++++ + + + C ++GA GFV K E ++ +I A +A GY Sbjct: 64 EVIARLQSLGLPLRVLVLTGQPPSLFARRCLNSGAAGFVCKHENLHEVINAAKAVMAGYT 123 Query: 122 YFPFSL---NRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTY 178 YFP + R + SD + LS +E++V++ + G N DIA+ MF+SNKTVSTY Sbjct: 124 YFPSTTLSEMRMGDNAKSDSTLISVLSNRELTVLQLLAQGMSNKDIADSMFLSNKTVSTY 183 Query: 179 KSRLMEKLECKSLMDLYTFAQRNKIG 204 K+RL++KL SL++L A+RN + Sbjct: 184 KTRLLQKLNATSLVELIDLAKRNNLA 209 >UniRef50_B2KBW2 Two component transcriptional regulator, LuxR family n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KBW2_ELUMP Length = 215 Score = 239 bits (612), Expect = 3e-62, Method: Composition-based stats. Identities = 53/212 (25%), Positives = 105/212 (49%), Gaps = 8/212 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKND--IEILAELTEGGSAVQ-RVETLKPDIVIIDVDIPG 57 + ++ DDH L I+++L + I ++AE+ G + V+ D+ ++D+ +P Sbjct: 2 IRILLADDHALVRDGIKSILERKGKNISVVAEMGNGKEMLDYAVKNKNIDVYVVDIAMPI 61 Query: 58 VNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAK 117 +NGI ++ L K +I++S +D + AGA GFV K + II AI+ Sbjct: 62 LNGIAAVQKLLKINPDAKVIVLSMYDDRASVEKAFKAGARGFVVKVSSADEIIEAIKEVS 121 Query: 118 NGYCYFPFSLNRFV-----GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 G Y +++FV G + ++ L+ +E +++ I +G + +IA++ +S Sbjct: 122 AGRFYLCSKVSKFVVQGFLGKASPSKKDPSGLTPKEKQILQLIAEGFSSKEIAKEFGLSL 181 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNKIG 204 TV +++ +M KL+ +L +A + I Sbjct: 182 NTVHVHRNNIMRKLDIHKQAELVRYAIKEGIA 213 >UniRef50_C9QDP7 DNA-binding response regulator LuxR family n=2 Tax=Vibrio RepID=C9QDP7_VIBOR Length = 209 Score = 239 bits (612), Expect = 3e-62, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 111/206 (53%), Gaps = 3/206 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + I+ DDH L +++ L + D ++I+A + G A++ LKPD++++D+++P +N Sbjct: 2 IRLILADDHRLMQDGLKSRLEREDNLDIIACVGTGTEALEATLELKPDVLLLDINMPNLN 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+VLE L K + +I++S + Y AGA G+V K G ++ AI G Sbjct: 62 GIEVLEQLAKTSSATSVIMLSMHDSRDYVVRSVKAGAKGYVLKDVGSEELVMAINQVAQG 121 Query: 120 YCYFPFSLNRFVGSL--TSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 Y + + + ++K D+LSK+E V++ I +G N +IA+ + IS +TV T Sbjct: 122 RSYLCPQASDRLLEQINEAPEEKDDTLSKRESDVLKAIANGAGNKEIADSLHISVRTVET 181 Query: 178 YKSRLMEKLECKSLMDLYTFAQRNKI 203 ++ R+ +KL S L A + + Sbjct: 182 HRLRIKKKLGATSTAALVKLALQKGL 207 >UniRef50_C7I0E4 Two component transcriptional regulator, LuxR family n=2 Tax=Thiomonas intermedia K12 RepID=C7I0E4_THIIN Length = 226 Score = 239 bits (612), Expect = 3e-62, Method: Composition-based stats. Identities = 52/207 (25%), Positives = 105/207 (50%), Gaps = 5/207 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 + +IIDDH L ++ L ND++ + + A+Q + +V++D+ +P NG Sbjct: 19 LRVLIIDDHALLGESLARFLGSNDMQAVW-CGDLVEAMQSIRDRSWSVVLLDLSMPRGNG 77 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 + +L+ ++ ++I+S + + GA G+++K + ++ AI+ +G Sbjct: 78 LDLLKRIKLMHPDLPVLILSMHPEQQFALRALRGGAAGYLTKGCSPDVLVEAIQKVVHGG 137 Query: 121 CYFPFSLNRFVGSLTSD----QQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 Y + + + ++ ++ LS +E+ V +++GK N +A+++ IS KTVS Sbjct: 138 RYLTPGVAEQLANYMNEGEAAEEPHARLSDREMQVFMRLVEGKSVNQVADELHISCKTVS 197 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKI 203 T+K+RLM KL + DL +A I Sbjct: 198 THKTRLMHKLALDNDADLVRYAMHQGI 224 >UniRef50_A0NNP3 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NNP3_9RHOB Length = 205 Score = 239 bits (612), Expect = 4e-62, Method: Composition-based stats. Identities = 58/203 (28%), Positives = 105/203 (51%), Gaps = 3/203 (1%) Query: 4 IIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 ++ DDH L IR L K D+E++ E T G A+ L+PD++++DV +P +NG++ Sbjct: 1 MLADDHELVRDGIRARLQKVADLEVVGEATNGREALTLAHDLRPDVLLMDVSMPVMNGLE 60 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 +RK ++I+S ++ Y + AGA G++ K +I AI + +G Y Sbjct: 61 AATQMRKLLPEIAVLILSVYDNPEYVRGVVQAGARGYILKDISAAEMITAITSVASGGYY 120 Query: 123 FPFSLNRFVGSLTSDQQKLDS--LSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKS 180 F ++ + + D L+ +E V+ I G+ N ++A+++ IS +TV +++ Sbjct: 121 FSSAVGPTLVGAGTSAPVEDPYGLTDRERQVLTAIARGQPNKEVAKELGISVRTVESHRL 180 Query: 181 RLMEKLECKSLMDLYTFAQRNKI 203 L EK+ K+ LY AQ + Sbjct: 181 NLREKVGNKNAAQLYKVAQDLGL 203 >UniRef50_B2J8J5 Two component transcriptional regulator, LuxR family n=3 Tax=Cyanobacteria RepID=B2J8J5_NOSP7 Length = 211 Score = 239 bits (612), Expect = 4e-62, Method: Composition-based stats. Identities = 44/204 (21%), Positives = 91/204 (44%), Gaps = 5/204 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDHP+ A+ L ++D+ ++ +G A++ +PD+ ++D+ +P + Sbjct: 9 IRILLADDHPILGQALTMFLQCESDMTVIGHAGDGREALELFHQHQPDVALMDLRMPKME 68 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G + + + I++++ + AGA G++ K N ++ AI G Sbjct: 69 GADAIAAICAKFKHARIVVLTTFDGDEDIYRGLRAGAKGYLLKGAEPNELLDAIRTVHKG 128 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 Y P ++ + S ++ LS +E+ V+R I GK+N I+ + I+ TV + Sbjct: 129 QKYIPPTIAAKLAERMSSEE----LSDRELEVLRLIAKGKNNQQISNVLNIAESTVRFHT 184 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 + + KL A I Sbjct: 185 NNIFGKLNVSDRTQALVTALNRGI 208 >UniRef50_Q89IF1 Two-component response regulator n=2 Tax=Bradyrhizobium RepID=Q89IF1_BRAJA Length = 217 Score = 239 bits (612), Expect = 4e-62, Method: Composition-based stats. Identities = 51/206 (24%), Positives = 96/206 (46%), Gaps = 3/206 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 ++ +++DDHP+ R +L + D+ ++AE A + PD+V++D+ +PG + Sbjct: 9 ISVLLVDDHPIVRQGYRRVLESQGDLHVVAEADNAADAYGAFKAHDPDVVVLDISMPGAS 68 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + +R R I++ + N+ K AGA+GFV+K + ++ AI + G Sbjct: 69 GLEAIRNIRARSPRARILVFTMHNEAVLVKAAFSAGASGFVTKSSEPSAVVNAIRSVARG 128 Query: 120 YCYFPFSLNRFVG--SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 + + SL+ LD L ++EI ++R G IA + +S KTV Sbjct: 129 ERAMSDDIAHILADDSLSPTGSVLDQLGEREIEILRQFAGGATTEQIATHLNLSVKTVQN 188 Query: 178 YKSRLMEKLECKSLMDLYTFAQRNKI 203 Y + K ++ L A + Sbjct: 189 YHYLIKTKTGARTDAQLVRLAASCGL 214 >UniRef50_B7AAT6 Two component transcriptional regulator, LuxR family n=1 Tax=Thermus aquaticus Y51MC23 RepID=B7AAT6_THEAQ Length = 207 Score = 239 bits (611), Expect = 5e-62, Method: Composition-based stats. Identities = 60/204 (29%), Positives = 105/204 (51%), Gaps = 2/204 (0%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++++DH L + +R+LL + + ++ E A++ +E ++ D+ I+DV +P Sbjct: 2 IRVVLVEDHLLVRSGLRHLLEARGPVRVVGEAGSCREALELLEKVQADVAILDVSLPDGT 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI + + LR+R ++ +S D Y + AG G+VSK ++ A+ A G Sbjct: 62 GIALCQRLRERFPELRLLALSMHEDLEYVRGFLQAGGQGYVSKAAVDQELLDAVLAVARG 121 Query: 120 YCYFPFSLN-RFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTY 178 Y +L R L + + LS +E V+R + G + ++AEK+ IS KTV+TY Sbjct: 122 ERYLNPALAMRLAMELVRESAEEAPLSPREEEVLRLLAQGLSHKEVAEKLGISEKTVATY 181 Query: 179 KSRLMEKLECKSLMDLYTFAQRNK 202 + R MEKL S +L +A R Sbjct: 182 RERGMEKLGLASRSELLRYAARKG 205 >UniRef50_C5V5K1 Two component transcriptional regulator, LuxR family n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V5K1_9PROT Length = 211 Score = 239 bits (611), Expect = 5e-62, Method: Composition-based stats. Identities = 54/207 (26%), Positives = 111/207 (53%), Gaps = 4/207 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + I+ DDH L A + L IE++ E G +++++ + D+V++D+D+PG N Sbjct: 3 VRLIVTDDHELVRAGLLQLFEGAPGIEVVGEAVNGEELMRKLQATQVDLVLLDLDMPGEN 62 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G ++E +R+ +I+I+SA ++ AGA+G++ K ++ AI Sbjct: 63 GANLIERIRRHYPDLLILILSAHDEIKVVSRAVQAGASGYICKDCSPKTLLEAIHKVVAT 122 Query: 120 YCYFPFSLNRFVG---SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 Y + + ++ L LS +E + R +++G N+DI+ ++FIS++TVS Sbjct: 123 GKYLSPLMAEELAYTSAIPQANNSLALLSSREQEIFRLLVEGLSNDDISRQLFISDRTVS 182 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKI 203 +K L+ KL K++++L ++ ++++ Sbjct: 183 AHKINLLNKLGLKNVVELVHYSIQHQL 209 >UniRef50_D2QGZ7 Two component transcriptional regulator, LuxR family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QGZ7_9SPHI Length = 218 Score = 239 bits (611), Expect = 5e-62, Method: Composition-based stats. Identities = 52/217 (23%), Positives = 116/217 (53%), Gaps = 17/217 (7%) Query: 4 IIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPD------IVIIDVDIP 56 +++DDH + IR LL + D +EI+ E +G + +++ L+PD ++++D+ +P Sbjct: 1 MLVDDHSIVRDGIRLLLEQADGLEIIDEANDGEEVLDKLKVLQPDPSLLPDLILMDISLP 60 Query: 57 GVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAA 116 G++GIQ + + + + ++++S N+ Y +AGA G++ K + +I AI Sbjct: 61 GMSGIQTTQVISRLYKNVRVLMLSMHNNEDYILRSVEAGAYGYILKDSSSDEMIKAIRTI 120 Query: 117 KNGYCYFPFSLNRFV----------GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAE 166 +G Y+ + + G ++ LS +E ++++++DG + +IAE Sbjct: 121 ASGEKYYSSPVASIILSGYMQQLKKGDRHGRAERQSKLSNKEKEILQFLVDGMSSREIAE 180 Query: 167 KMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 K+ +S +TV +++ +M +L+ ++ +L A +K+ Sbjct: 181 KLQLSVRTVDNHRANMMRRLQVRNAAELVRMAVEDKL 217 >UniRef50_UPI00016C48EF two-component response regulator n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C48EF Length = 220 Score = 239 bits (611), Expect = 5e-62, Method: Composition-based stats. Identities = 50/203 (24%), Positives = 98/203 (48%), Gaps = 2/203 (0%) Query: 2 NAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 ++ DDH + +R L+ + D+E++ E G V V +P ++ +D+ +PG Sbjct: 5 RIVLADDHVILREGLRALISAQPDLEVVGEAASGTETVDCVRATEPRVLCLDLSMPGWGS 64 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 + + + +++++ ND Y + AGA G+ K +++AAI A G Sbjct: 65 ATTITRVTQLAPRTRVLVLTMHNDPAYVRSALAAGAAGYFLKTTPSPDLLAAIRAVATGA 124 Query: 121 CYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKS 180 +L +G ++ LS++E V+ ++ G + +IA+++F+S KTV TY++ Sbjct: 125 RVIDPALGDVLGGPPPPAER-SQLSRRETEVLELLVKGLTHQEIADQLFLSVKTVETYRA 183 Query: 181 RLMEKLECKSLMDLYTFAQRNKI 203 RL EK K+ D + + Sbjct: 184 RLREKTGLKTRADYVRYGLEAGL 206 >UniRef50_Q1QVM5 Two component transcriptional regulator, LuxR family n=29 Tax=Gammaproteobacteria RepID=Q1QVM5_CHRSD Length = 214 Score = 239 bits (611), Expect = 5e-62, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 114/206 (55%), Gaps = 3/206 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH L +I +L D ++++AE +G AV L+PDIV++D+ +PG+ Sbjct: 2 IKVLVADDHHLVRTSIARMLDSEDGLKVIAEAVDGEEAVNMARELRPDIVLMDIRMPGIG 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + + ++IV+A + + + DAGA GF+SK ++ ++ AI A +G Sbjct: 62 GLEATRKIMRGMSDIKVVIVTAFLEEAFAQRLMDAGAAGFISKGTELDEMVRAIRAIFDG 121 Query: 120 YCYFPFSLNR--FVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 Y + + + + + D LS +E+ V I++ + +DI++++F+S KTV+T Sbjct: 122 QRYISPDIAQKVVLSKMGTQDNPFDQLSHRELQVAMMIVNCQKVSDISDRLFLSPKTVNT 181 Query: 178 YKSRLMEKLECKSLMDLYTFAQRNKI 203 Y+ R+ EKL +S ++L R + Sbjct: 182 YRYRIFEKLNVQSDVELTHLGLRYGL 207 >UniRef50_UPI00018507A5 two component LuxR family transcriptional regulator n=1 Tax=Bacillus coahuilensis m4-4 RepID=UPI00018507A5 Length = 212 Score = 239 bits (611), Expect = 5e-62, Method: Composition-based stats. Identities = 54/203 (26%), Positives = 94/203 (46%), Gaps = 10/203 (4%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I DDHPL + ++L D E++AE G AVQ L PD+V++D+ +P +N Sbjct: 4 IRVLIADDHPLFRQGVSSVLANTPDNEVIAEAGSGEEAVQMACNLLPDLVLMDIQMPDLN 63 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ + + III++ D AGA G+V K +I+ A+ A G Sbjct: 64 GIEATRKILSKCRDIYIIIITMFEDDTSVFSAMQAGARGYVLKDAEKEDILRAVRAIAKG 123 Query: 120 YCYFPFSLNRFVGSLTSDQQ---------KLDSLSKQEISVMRYILDGKDNNDIAEKMFI 170 F + + + + L+ +E V+ + G N+++AE + + Sbjct: 124 EVLFSSGVASRMIDYFAQGEVTQTVVASTLFPELTSRESEVLFLLSKGASNSEVAETLGL 183 Query: 171 SNKTVSTYKSRLMEKLECKSLMD 193 SNKTV Y + ++ KL+ + Sbjct: 184 SNKTVYNYVANILNKLQVSDRQE 206 >UniRef50_Q1LE49 Two component transcriptional regulator, LuxR family n=5 Tax=Burkholderiaceae RepID=Q1LE49_RALME Length = 264 Score = 239 bits (611), Expect = 5e-62, Method: Composition-based stats. Identities = 52/210 (24%), Positives = 105/210 (50%), Gaps = 8/210 (3%) Query: 2 NAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 + +I++DH L A +R++L + + E +G A Q +L PD++++D+ +PG+NG Sbjct: 6 SVLIVEDHNLLRAGLRSMLSAQMGYHVAGEARDGREACQLAISLCPDLILMDLSLPGMNG 65 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 I + +++R II +S + Y + AG +G+V K ++++ A+ G Sbjct: 66 IDAIAAIKRRSPGIRIIALSVHQNDEYVREALRAGVDGYVLKDTSFDDLVTAMRVVLLGK 125 Query: 121 CYFPFSLNRFV-------GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 + L + +++ + D L+ +E SV++ + +G+ N + M +S K Sbjct: 126 KHLSPELYGNLVESYVSGHEMSTAKTGWDLLTARERSVLKLVAEGRSNRQVGIYMNLSPK 185 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 T+ Y++ LM KL +L +L A + Sbjct: 186 TIEKYRASLMRKLGITNLTELVLIAISMGL 215 >UniRef50_A3Y699 Putative two component system response regulator n=1 Tax=Marinomonas sp. MED121 RepID=A3Y699_9GAMM Length = 226 Score = 238 bits (610), Expect = 6e-62, Method: Composition-based stats. Identities = 50/213 (23%), Positives = 104/213 (48%), Gaps = 10/213 (4%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I+DD L + + +L ++DIE++AE G A++ + PD++++D+ +P ++ Sbjct: 3 IRIVIVDDQALVRSGLSMILDHQSDIEVVAECANGLEAIEAAKKYIPDLILMDIRMPEMD 62 Query: 60 GIQVLETLR-KRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKN 118 G+ + I+I+S + Y GA+GF+ K + ++AA+ Sbjct: 63 GLSATSAILGDLNIQTRIVILSTFDLDEYIYRALREGASGFILKDTPPDELVAAVHVVAQ 122 Query: 119 GYCYFPFSLNRFVGSLTSDQQK--------LDSLSKQEISVMRYILDGKDNNDIAEKMFI 170 G S+ + + ++ + +D L+ +E +++ + G +N++IA ++FI Sbjct: 123 GGALLTPSITKKLIGAFAELKPSHTNVTGHIDRLTTREKEILKNLALGFNNSEIASRLFI 182 Query: 171 SNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TV T+ S L+ KLE + FA N + Sbjct: 183 GESTVKTHVSSLLSKLELRDRAQAVIFAYENGV 215 >UniRef50_Q3K943 Putative LuxR family response regulator n=4 Tax=Gammaproteobacteria RepID=Q3K943_PSEPF Length = 208 Score = 238 bits (610), Expect = 6e-62, Method: Composition-based stats. Identities = 71/208 (34%), Positives = 124/208 (59%), Gaps = 9/208 (4%) Query: 2 NAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGI 61 + I+DDHP+ A+R LL +++ E G A+Q V PD++I+D+ IP ++G+ Sbjct: 3 SVFIVDDHPVIRLAVRMLLEHEGYKVVGETDNGVDAMQMVRECMPDLIILDISIPKLDGL 62 Query: 62 QVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 121 +VL ++++A+ +G C +GA+G+V K+E ++ +++AI+A +GY Sbjct: 63 EVLARFNAMSSPFKTLVLTAQCPTLFGIRCMQSGASGYVCKQEDLSELVSAIKAVLSGYN 122 Query: 122 YFPFSLNRFVGSLTSDQQKLDSL------SKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 YFP ++ + + D + L + +E+ V++ G+ N +IA+ MF+SNKTV Sbjct: 123 YFP---SQALNPVRHDDVRYAELELFKSVNDRELMVLQLFAQGRTNKEIAKGMFLSNKTV 179 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKI 203 STYK RLM+KL+ KSL++L A+RN + Sbjct: 180 STYKKRLMQKLKAKSLVELIEMAKRNAL 207 >UniRef50_A4TJY3 Two-component response regulator n=27 Tax=Yersinia RepID=A4TJY3_YERPP Length = 210 Score = 238 bits (610), Expect = 6e-62, Method: Composition-based stats. Identities = 73/206 (35%), Positives = 130/206 (63%), Gaps = 4/206 (1%) Query: 2 NAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 + +I+DDHP AI LL ++ + ++E +G A+++++ D+VIID+++P +G Sbjct: 4 SVMIVDDHPAIRVAIHALLSQSKEFSTISESVDGSEALEKLKNNPVDLVIIDIELPNFDG 63 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 +L+ L++R ++G + +SAKN+ + AGANGF+SK + ++ I+ A + GY Sbjct: 64 FSLLKKLQQRGFTGKSLFLSAKNEQVFAVRALQAGANGFISKNKDISEILFAAQNVLRGY 123 Query: 121 CYFPFS-LNRFVGSLTSDQQ--KLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 +FP L + G +S + LS++EI+V+RY+++G N IA++MFISNKTVST Sbjct: 124 SFFPSETLTQLAGQPSSHDPVNRARLLSEREINVLRYLVNGLSNKQIADEMFISNKTVST 183 Query: 178 YKSRLMEKLECKSLMDLYTFAQRNKI 203 YK+R++ KL S+++L +A + + Sbjct: 184 YKTRILTKLGLSSVIELADYAHTHNL 209 >UniRef50_Q027R2 Two component transcriptional regulator, LuxR family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q027R2_SOLUE Length = 247 Score = 238 bits (610), Expect = 7e-62, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 105/221 (47%), Gaps = 18/221 (8%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDHP+ + LL + D E++A+ +G + ++ +PDI+++D+ +PG++ Sbjct: 23 IRIVVADDHPIFRDGLCRLLALEEDFEVVAQAQDGRQVLDVLQQHEPDILLLDLKMPGLD 82 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ L+ L+ + +I+++A +D G +G V K+ +I +I G Sbjct: 83 GLATLQRLQIAKNKTRVIVLTASDDKNEFVQAMKLGTSGIVLKQTATELLIKSIRKVHAG 142 Query: 120 YCYFP-----------------FSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNN 162 + ++ + + +++ LS++E ++ + G N Sbjct: 143 EIWLDSHTTAAVIRQFVANDETPAMAAPSQAPPTRERERSPLSQREREIVALVAQGFKNK 202 Query: 163 DIAEKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 ++AEKMFIS +TV + + +KL ++L +A N + Sbjct: 203 EMAEKMFISEQTVKNHLHNIFDKLGVSDRLELALYAIHNNL 243 >UniRef50_C9P7J6 Two component transcriptional regulator LuxR family n=1 Tax=Vibrio metschnikovii CIP 69.14 RepID=C9P7J6_VIBME Length = 202 Score = 238 bits (610), Expect = 7e-62, Method: Composition-based stats. Identities = 77/202 (38%), Positives = 128/202 (63%), Gaps = 2/202 (0%) Query: 2 NAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGI 61 N I++DDHP+ + A + +L KN+ ++AE G A+++++ +P IV+ID+ IP ++GI Sbjct: 3 NIILVDDHPIVLMAAKVILEKNNFSVVAEAKNGVEAIKKIKEYQPHIVVIDISIPLIDGI 62 Query: 62 QVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 121 V+E + ++++++ + + C AGA G++SK+ G+ ++ A++A GY Sbjct: 63 SVIERCTAMGITTKFLVLTSQPNSHFVSLCMQAGAYGYLSKETGLEELVTAMKAIAAGYK 122 Query: 122 YFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKSR 181 +FP + S DQ L LS +EI V Y++ G NN+IAEKM ISNKTVSTYK R Sbjct: 123 FFPDCVTHL--STVQDQNDLSILSAREIVVFNYLVSGLSNNEIAEKMLISNKTVSTYKKR 180 Query: 182 LMEKLECKSLMDLYTFAQRNKI 203 +M+KL K+++DL + A+RN + Sbjct: 181 IMDKLNAKNIVDLISIAKRNNV 202 >UniRef50_A7NIZ3 Two component transcriptional regulator, LuxR family n=2 Tax=Roseiflexus RepID=A7NIZ3_ROSCS Length = 230 Score = 238 bits (610), Expect = 7e-62, Method: Composition-based stats. Identities = 51/209 (24%), Positives = 93/209 (44%), Gaps = 7/209 (3%) Query: 2 NAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 +I+DDH LA A + +L + IE++ E G +A+ V D+V++D+ +P ++G Sbjct: 15 RVLIVDDHELARAGLAAVLACEPGIEVVGEADNGAAALDFVARHPVDLVMMDLQMPVIDG 74 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 I+ ++ + II+V+ + AG G++ K II A+ G Sbjct: 75 IEATRRIKALHPAIGIIMVTVQAKPDALMEALRAGVAGYLLKDASRREIIGAVRQVLRGE 134 Query: 121 CYFPFS-----LNRFV-GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 + L R + T D ++ L+ +E V+R ++ GK N +IA ++ IS T Sbjct: 135 AFLNPDLVLQTLRRLAHATPTDDATPIEPLTPREQQVLRLLMQGKTNREIARELIISPGT 194 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 V + ++ KL A + Sbjct: 195 VKVHVEHIIAKLGVSDRTQAAVRALELGL 223 >UniRef50_C1TL62 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TL62_9BACT Length = 217 Score = 238 bits (610), Expect = 7e-62, Method: Composition-based stats. Identities = 54/209 (25%), Positives = 105/209 (50%), Gaps = 5/209 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++IDDH L ++ LL + D + E ++G + ++ +PD+V++D+ +P ++ Sbjct: 4 IRMVLIDDHKLFRDGMKKLLEMEPDFSLEGEASDGIEGLALIKRSRPDVVLLDIGMPNLD 63 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI ++ LR + + + ++A ND + G +GFV K G +++AI + G Sbjct: 64 GIGLIRELRSTEQNTKFVAITAFNDERKLSELSSVGVHGFVLKSSGRTELLSAIRSVARG 123 Query: 120 YCYFPFSLNR-FVGSLTSDQQKLD---SLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 CY + +G+ Q + D L+ +E V+ ++ G N +I+ KM +S KTV Sbjct: 124 QCYVDPKVAGLLLGAFHKKQDEADMLCDLTDREKEVLFWLAQGLSNLEISAKMNLSEKTV 183 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKIG 204 + S +++KL+ + A R I Sbjct: 184 KNHVSHILKKLDLRDRTQAAILAWRVGIA 212 >UniRef50_A7NP18 Two component transcriptional regulator, LuxR family n=12 Tax=Bacteria RepID=A7NP18_ROSCS Length = 222 Score = 238 bits (609), Expect = 7e-62, Method: Composition-based stats. Identities = 46/207 (22%), Positives = 93/207 (44%), Gaps = 4/207 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH + +R LL + I+ E + G + + L+PDIV++D+ +P ++ Sbjct: 6 IRILLADDHRMFRQGLRELLERKGGFIIVGEASTGREVLAQAAALRPDIVLLDIQMPEID 65 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ V L + +I+++ + AGA ++ K + +I IE G Sbjct: 66 GVAVARQLAQTHPDVKVIMLTMYRQDQHLFEAIKAGARAYLLKDADADELIDVIERVHRG 125 Query: 120 YCYFPFSLNRFVGSLTSD---QQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 ++ V Q + L+++E ++ + +G DN IA+++F+S KTV Sbjct: 126 EAALDPTVTLRVFDEFRRLSIDQDAEQLTERERDILTLLAEGHDNRTIAQRLFLSEKTVG 185 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKI 203 S + +KL + A + + Sbjct: 186 NRLSEIFQKLGVSNRTQAALVAVQRGL 212 >UniRef50_A1ZFU2 Transcriptional regulator, LuxR family n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZFU2_9SPHI Length = 219 Score = 238 bits (609), Expect = 8e-62, Method: Composition-based stats. Identities = 58/210 (27%), Positives = 108/210 (51%), Gaps = 8/210 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVE--TLKPDIVIIDVDIPG 57 + II DDH + + + L+ NDIE++ G A + +E L DI ++DVD+P Sbjct: 7 IKVIIADDHHMVLEGLEALIKVTNDIEVIGLAYNGHHAFKLLELNQLDVDIAVLDVDMPV 66 Query: 58 VNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAK 117 +G++ +R + ++I++ N+ Y K AGA+G++ K G + ++ AI Sbjct: 67 QDGLETTRKIRTEYPNIKVLILTMHNNESYIKEIIAAGASGYILKNRGASELVNAIRTIY 126 Query: 118 NGYCYFPFSLNRFV-----GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 G YF ++ + S + L+K+E V+ I G +I++++FI++ Sbjct: 127 AGEEYFSKAVTDTLIKSIQESKKAKPNPQVKLTKREKEVLALIGKGMTTKEISKQLFIAD 186 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNK 202 TV T++ L++KLE K+ +L + +NK Sbjct: 187 TTVETHRRNLIDKLEVKNSKELILYVAKNK 216 >UniRef50_D2BGT0 DNA-binding response regulator, LuxR family n=5 Tax=Dehalococcoides RepID=D2BGT0_DEHSV Length = 232 Score = 238 bits (609), Expect = 8e-62, Method: Composition-based stats. Identities = 59/209 (28%), Positives = 104/209 (49%), Gaps = 8/209 (3%) Query: 2 NAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 +I DDH + + LL + DIE++ E +G AV V KPD+V++D+ +P + G Sbjct: 5 KVLIADDHAVLREGMSRLLSQEKDIEVVGEAGDGQEAVDMVAQFKPDVVLMDIVMPRLTG 64 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 ++ + ++K S I+I++A +D Y +AGA+G++ K + I+ AI A K G Sbjct: 65 VEATKLIKKNNPSTCILILTAYSDIRYILGLLEAGASGYLLKSAKSDEIVGAIRAIKAGE 124 Query: 121 CYFPFSLNRFVG------SLTSDQQKL-DSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 R + S SD+ K+ LS +E+ +++ G N +IA+K+ +S + Sbjct: 125 SVLDSIATRKLLERVVNVSKESDEDKVRGQLSPREVEILQLASKGLSNREIADKLTLSMR 184 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQRNK 202 TV + S + K+ C + R Sbjct: 185 TVKAHLSNIFNKMRCSCRTEAIVKGFREG 213 >UniRef50_D1VBH1 Two component transcriptional regulator, LuxR family n=29 Tax=Actinobacteria (class) RepID=D1VBH1_9ACTO Length = 248 Score = 238 bits (609), Expect = 9e-62, Method: Composition-based stats. Identities = 57/215 (26%), Positives = 101/215 (46%), Gaps = 12/215 (5%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I DD L A R L+ D+ ++AE +G +AV+ L+PD+V++D+ +P +N Sbjct: 26 IRVLIADDEGLVRAGFRALVEATPDLTVVAEAADGVAAVRESRRLRPDVVLMDIRMPVMN 85 Query: 60 GIQVLETLRKR--QYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAK 117 G++ + + I++V+ +D Y AGA GF+ K N++AAI Sbjct: 86 GLEATRLIAADAVRPGPGILVVTTFDDDEYVFEALRAGAAGFILKDTQPENLLAAIRTVA 145 Query: 118 NGYCYFPFSLNR-----FVGSLTSDQQKL----DSLSKQEISVMRYILDGKDNNDIAEKM 168 G + R FV L +L+ +E +V+ I +G N +IA+ + Sbjct: 146 AGDALLAPGVTRRLIAAFVRVPAPPASPLTGLASTLTDRERAVLTQIANGYSNAEIAQAL 205 Query: 169 FISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 ++S TV T+ L+ KL + L A + + Sbjct: 206 YVSVSTVKTHVGHLLAKLAARDRAQLVIAAYESGL 240 >UniRef50_C4KAM8 Two component transcriptional regulator, LuxR family n=4 Tax=Proteobacteria RepID=C4KAM8_THASP Length = 217 Score = 238 bits (608), Expect = 1e-61, Method: Composition-based stats. Identities = 51/205 (24%), Positives = 97/205 (47%), Gaps = 2/205 (0%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 + ++ DDH + R LL E++ E G +AVQ L PD++++DV +PG+ G Sbjct: 10 LRILLADDHAVVRMGFRLLLEGAGAEVVGEADCGEAAVQAFGQLHPDVLLMDVSMPGIGG 69 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 + LE + + ++++SA +D AGA G++SK+ + ++ A+ G Sbjct: 70 LGALERVLAHHPAARVLMLSAHDDAQIPARALRAGAGGYLSKRAHPDELLHAVATVARGQ 129 Query: 121 CYFP--FSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTY 178 Y + + + +L+++E +V + G+ +IAE +S TV T+ Sbjct: 130 RYIDPAIAPALALAQFAGGGDPVAALTEKEFAVFLQLARGRSVAEIAETHSLSPSTVGTH 189 Query: 179 KSRLMEKLECKSLMDLYTFAQRNKI 203 + +KLE + +L A R + Sbjct: 190 LYHIKQKLEVSNAAELALVAVRCGL 214 >UniRef50_UPI0001AEC81D LuxR family transcriptional regulator n=1 Tax=Alteromonas macleodii ATCC 27126 RepID=UPI0001AEC81D Length = 209 Score = 238 bits (608), Expect = 1e-61, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 100/205 (48%), Gaps = 2/205 (0%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH L + +L DI ++ E +G + + V L PD++++D+ +P ++ Sbjct: 3 IRVVLADDHVLMRQGVSQMLNANPDISVVGECDDGVALIAAVLKLSPDVILMDISMPRMS 62 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ ++ + ++ I+++S N+ Y + DAGA G++ K+ +++ AI+ Sbjct: 63 GLVAIDKILSQRSDAKILVLSMHNEVEYIEAMRDAGAKGYILKESSGESLVEAIKKVAAN 122 Query: 120 YCYFPFSLNRFVGSL-TSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTY 178 FP L + L L+++E V ++ G + IAE + +S KT + Sbjct: 123 KTCFPDELTQSSSDQCQKHVSPLSVLTRREREVFFLVVAGNTSKKIAELLDMSLKTAENH 182 Query: 179 KSRLMEKLECKSLMDLYTFAQRNKI 203 +S + +KL S +L A + + Sbjct: 183 RSNIYKKLNLSSSAELIRMAGKAGL 207 >UniRef50_B8GUD1 Two component transcriptional regulator, LuxR family n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GUD1_THISH Length = 227 Score = 238 bits (608), Expect = 1e-61, Method: Composition-based stats. Identities = 46/209 (22%), Positives = 100/209 (47%), Gaps = 7/209 (3%) Query: 2 NAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGI 61 ++IDDH L ++ LL ++ I+ + + +G + + L PD++++D+ +P +NG+ Sbjct: 4 RVLLIDDHTLFREGLQELLKRHGIDTVGAVGDGETGIDLARDLLPDVILLDMRMPAMNGL 63 Query: 62 QVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 121 +VL LR+ I++++ + C GA G++ K+ +++ A+E G Sbjct: 64 EVLRRLRQAGLKMPIVMLTTSTEEQDLVECLRNGAQGYLLKEMEPGDLVDALEEILQGKT 123 Query: 122 YFPFSLNRFV-------GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 L + + S ++ D L+ +E ++ + +G+ N IA + IS+ T Sbjct: 124 VVAPDLAQLLVRVVQGKSSSANEPSPFDELTPREGEILALLAEGQSNKVIARNLGISDGT 183 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 V + ++ KL S ++ A + + Sbjct: 184 VKLHVKAILRKLGVHSRVEAAVLAVQQGL 212 >UniRef50_C6C961 Two component transcriptional regulator, LuxR family n=24 Tax=Gammaproteobacteria RepID=C6C961_DICDC Length = 211 Score = 237 bits (607), Expect = 1e-61, Method: Composition-based stats. Identities = 50/204 (24%), Positives = 110/204 (53%), Gaps = 1/204 (0%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 +N +IDDH + + LL + DI+++ + A + L D+ ++D+ +P + Sbjct: 4 INVALIDDHIVVRSGFAQLLSLEGDIQVVGQYASAADAGVSLLKLNVDVAVMDIAMPDES 63 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ +L LR+++ + II+S + + + DAGA G+++K+ G ++ A+ A G Sbjct: 64 GLSLLARLRQKRPTFRAIILSIYDTAAFVQSALDAGACGYLTKRCGPEELVQAVRAVHAG 123 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 Y R + + L++L+ +E + +++G IAE++ +S+KTV ++ Sbjct: 124 GSYLCADAMRALRHSRQRPKALEALTPREREIFDLLVNGLSVKTIAEQLDLSHKTVHVHR 183 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 + +++KL C + ++L FA ++++ Sbjct: 184 ANVLDKLHCATTVELVHFALQHQL 207 >UniRef50_B3PFS2 GacA n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PFS2_CELJU Length = 217 Score = 237 bits (607), Expect = 1e-61, Method: Composition-based stats. Identities = 60/208 (28%), Positives = 105/208 (50%), Gaps = 6/208 (2%) Query: 2 NAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 +++DDH L I +L + +++ + G AV + LKPD+V++DV +PG+ G Sbjct: 3 KILVVDDHDLVRMGIVRMLADIDGYQVVGDAKSGEEAVTKARILKPDVVLMDVKMPGMGG 62 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 ++ + L + II V+A +D Y AGA G+V+K I AI G Sbjct: 63 LEATKKLLTVNPAIKIIAVTACDDDLYPTRLMQAGAVGYVTKGADFTEITDAINKVTRGD 122 Query: 121 CYFPFSLNRFVGSLT-----SDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 Y S+ + + T + + + LS++E+ I +G+ NDIA +S KTV Sbjct: 123 LYMSNSIAQQLALRTFSGANNQESPFEKLSQRELQTAMLIANGQKVNDIANTFCVSPKTV 182 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKI 203 ++Y+ R+ EKL+ S ++L A ++ + Sbjct: 183 NSYRYRIFEKLDINSDVELTLLAVKHNL 210 >UniRef50_C7MRK0 Response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein n=2 Tax=Saccharomonospora viridis DSM 43017 RepID=C7MRK0_SACVD Length = 226 Score = 237 bits (607), Expect = 1e-61, Method: Composition-based stats. Identities = 45/211 (21%), Positives = 99/211 (46%), Gaps = 8/211 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLK------PDIVIIDV 53 + +++DDH + +R L D+ +++E +G AV + P +V++D+ Sbjct: 11 VRVMVVDDHAIVRRGLRAYLETVPDLRLVSEAADGQEAVDLLNERHVVGDPMPHVVLMDL 70 Query: 54 DIPGVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAI 113 +P ++GI+ ++ ++++++ ++ AGA G+V K + A+ Sbjct: 71 QMPRLDGIEATRSILASYPDVKVVVLTSFSEAERVHAALSAGAAGYVLKDAEPEEVATAV 130 Query: 114 EAAKNGYCYFPFSLNRFVGSLTSDQQ-KLDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 AA G + ++ R + + Q + SL+ +E ++ + G N +IA+++ IS Sbjct: 131 RAAVKGEVHLDAAVARLLARRMASPQVGVTSLTARERDILVLVGQGLSNREIADRLVISE 190 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 +T T+ S ++ KL+ S A R + Sbjct: 191 RTARTHVSNVLSKLQLSSRTQAALLAIREGL 221 >UniRef50_A9AX03 Two component transcriptional regulator, LuxR family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AX03_HERA2 Length = 218 Score = 237 bits (607), Expect = 1e-61, Method: Composition-based stats. Identities = 48/211 (22%), Positives = 105/211 (49%), Gaps = 8/211 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I DD + + +L + D+E++A + G AVQ T +PD++++D+ +P +N Sbjct: 2 IKLLICDDQAVVRDGLSIMLNLAPDLEVIAVASNGREAVQLSATWQPDLILMDLKMPIMN 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ + Q I++++ +D + AGA G++ K +++++AI +G Sbjct: 62 GIEATRQISAAQPLVKILVLTTYDDDEWLFEAIRAGAAGYLLKDMAHSDLVSAIRGTVSG 121 Query: 120 YCYFPFSL-NRFVGSLTSDQQKLDS------LSKQEISVMRYILDGKDNNDIAEKMFISN 172 Y ++ R + + + + + + L+++E++V+ I G N IAE++ +S Sbjct: 122 KAYVDPNVTARLLSQVATSRNQPPASQLTGRLTERELAVLNLIATGHTNASIAEQLRLSE 181 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TV + S ++ KL+ A + + Sbjct: 182 GTVRNHVSTILSKLDVADRTQAALLAVEHGL 212 >UniRef50_Q021D5 Two component transcriptional regulator, LuxR family n=2 Tax=Acidobacteria RepID=Q021D5_SOLUE Length = 210 Score = 237 bits (607), Expect = 2e-61, Method: Composition-based stats. Identities = 49/204 (24%), Positives = 96/204 (47%), Gaps = 4/204 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 ++ +++DDH L R +L + I ++ E +G AVQ L P +V++D +P +N Sbjct: 6 ISVLLVDDHSLVRRGFRRMLEDDPAIVVVGEAEDGHQAVQLAGELHPRVVVMDFAMPSMN 65 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G + + I+I+S + Y + C +AG G++ K ++AA++ G Sbjct: 66 GAVAARHILRTAPETAILILSMHAEASYVRTCLEAGVRGYLLKNALDLEMVAAVKQVAAG 125 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 L L+ +E+ V++ I+ GK N +IA + +S TV+ ++ Sbjct: 126 KQVLDRRLGAL---DLPSGAAPAGLTTRELEVLQLIVHGKSNKEIAAVLSLSANTVAVHR 182 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 + +M+ L + +L +A R + Sbjct: 183 ANIMQTLGIHNTAELVVYAIRQGL 206 >UniRef50_A8L9Z7 Two component transcriptional regulator, LuxR family n=2 Tax=Frankia sp. EAN1pec RepID=A8L9Z7_FRASN Length = 218 Score = 237 bits (607), Expect = 2e-61, Method: Composition-based stats. Identities = 46/209 (22%), Positives = 97/209 (46%), Gaps = 5/209 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH L + + L+ + + ++ E T G AV T PD+V++D+++PG+ Sbjct: 8 IRVLLADDHRLVLDGLSALIDSVDGLTVVGEATSGEQAVDLAGTEHPDVVLMDIEMPGIG 67 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + Q + +++++ + + AGA G++ K +++ I A G Sbjct: 68 GVEATRRITTAQPTIAVVMLTMYGEDEFVFAALRAGARGYLLKGAQQKDVVRTIGAVARG 127 Query: 120 YCYFPFSLNRFV----GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 F + V S ++ L+++E V+ + +G N+ IA + ++ KTV Sbjct: 128 DAVFGPDVAHRVLRTFTSPPAENAPFPELTEREREVLSLLANGWPNSRIARHLQLTPKTV 187 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKIG 204 + S ++ KL A+R +G Sbjct: 188 ANNVSNILAKLHAPDRTAAILRARRAGLG 216 >UniRef50_Q2BNR9 DNA-binding response regulator, LuxR family protein n=2 Tax=Neptuniibacter caesariensis RepID=Q2BNR9_9GAMM Length = 214 Score = 237 bits (607), Expect = 2e-61, Method: Composition-based stats. Identities = 52/207 (25%), Positives = 98/207 (47%), Gaps = 5/207 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK--NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGV 58 M +I DDH + +LL E+L E G A ++ PD+VI+DV++ G+ Sbjct: 1 MKIVIADDHAVVRQGYASLLSAMLAPCEVL-EAGNGDQAYSLCQSDSPDVVIMDVNMQGI 59 Query: 59 NGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKN 118 +GI+ + +++ I+ S ++ +AGA G+++K +I A++ Sbjct: 60 SGIEATRRILQKKPDTRILFFSMYDEIPVVTQALEAGAKGYITKSCTPEILIEAVKKVSA 119 Query: 119 GYCYFPFSLNRFVGSLTSDQ--QKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 G Y L + +Q ++L ++++E + + G + +I+E++ IS+KTVS Sbjct: 120 GQLYVEHELAMRLAVSRPEQKDKRLKEMTQREFEIFVMLAQGSNVKEISEQLCISSKTVS 179 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKI 203 Y + L KL S +L A + Sbjct: 180 NYTAILKSKLNIGSTAELVHLAIETGL 206 >UniRef50_A9WA66 Response regulator receiver n=2 Tax=Chloroflexus RepID=A9WA66_CHLAA Length = 218 Score = 237 bits (607), Expect = 2e-61, Method: Composition-based stats. Identities = 49/214 (22%), Positives = 96/214 (44%), Gaps = 13/214 (6%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I+DD L I LL + DIE++ + G A++ V +L PD+V++DV +P ++ Sbjct: 3 IRVLIVDDQALIRTGIATLLSRKADIEVVGQAGNGREALELVASLDPDVVLMDVMMPVMD 62 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ L +R +I+++ +D AGA G++ K + +I G Sbjct: 63 GVEATRKLAERGPRPAVIMLTTFHDDERVLQSIAAGARGYLLKDVDHRVLADSIRTVAGG 122 Query: 120 YCYF-PFSLNRFVGSL-----------TSDQQKLDSLSKQEISVMRYILDGKDNNDIAEK 167 P + + + L +S L+ +E ++R + G N +I E+ Sbjct: 123 GALIHPQIIAQLLPRLASLAPTPVTASSSPSDVTSILTPRERDILRLLAQGYTNQEIGEQ 182 Query: 168 MFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRN 201 + +S TV + S + KL + +A+ + Sbjct: 183 LALSVGTVKNHLSVIFAKLAVRDRTQAALWAREH 216 >UniRef50_C5RGJ7 Two component transcriptional regulator, LuxR family n=2 Tax=Clostridium RepID=C5RGJ7_CLOCL Length = 220 Score = 237 bits (606), Expect = 2e-61, Method: Composition-based stats. Identities = 56/218 (25%), Positives = 103/218 (47%), Gaps = 15/218 (6%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 +N II DD + I+ +L ++I ++ E G + ++ D++++DV +P ++ Sbjct: 2 INVIIADDQKIVREGIKMILSLYDEINVIGEAENGEELINLLQNFMADVILMDVRMPIID 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + +++R +II++ N+ Y GA+G++ K G II AI + NG Sbjct: 62 GVEATKIIKERYIHTKVIILTTFNEDEYIFKAIKNGADGYLLKDVGSEFIINAIRSVYNG 121 Query: 120 YCYFPFSLNRFV--------------GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIA 165 + V + KL+SL+ +EI V + + GK N DI Sbjct: 122 AMLLDPEVTVKVVKAFNSITNESKNSNEFDNINNKLNSLTPREIDVAKLVAQGKSNKDIC 181 Query: 166 EKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 +F++ TV Y +R++ KLE S +L F + I Sbjct: 182 RSLFLTEGTVKNYVTRILGKLELNSRTELAVFINQAGI 219 >UniRef50_Q024A4 Two component transcriptional regulator, LuxR family n=2 Tax=Bacteria RepID=Q024A4_SOLUE Length = 225 Score = 237 bits (606), Expect = 2e-61, Method: Composition-based stats. Identities = 44/204 (21%), Positives = 99/204 (48%), Gaps = 5/204 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I DDHP+ + ++ + D+ ++ + G AV PD++++D+ +PG++ Sbjct: 23 IRVLIADDHPVVCLGLLGIINGQPDMTVVGQAKTGTEAVALARKHSPDVILMDLRMPGMS 82 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ E +R + +I+++ + AGA ++ K ++ AI + + G Sbjct: 83 GVEATEVIRAERPESAVIVLTTYQGDEDIRKALAAGAQSYLLKGMSHLKLLEAIRSVRTG 142 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 + YFP ++ V + +LS +E+ ++R I+ G N +IA+ + I+ TV + Sbjct: 143 HTYFPRAIRNSVPGKLNR----AALSPREMDILRLIVRGLSNQEIADALNITRGTVKWHV 198 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 + ++ +L+ A + I Sbjct: 199 NIILRRLDVNDRTQAVVVAVQRGI 222 >UniRef50_A1VB77 Two component transcriptional regulator, LuxR family n=5 Tax=Desulfovibrio RepID=A1VB77_DESVV Length = 216 Score = 237 bits (606), Expect = 2e-61, Method: Composition-based stats. Identities = 54/210 (25%), Positives = 105/210 (50%), Gaps = 7/210 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I++D + I+ LL N I+ E ++G A++ VE PDIV++D+ +P + Sbjct: 3 ITVVIVEDLDIVREGIKALLDANGEFIIVGEASDGIEALRIVEKHAPDIVLMDLTLPVME 62 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G + + +++R+ + ++ ++A AGA+G++ K + + A++ G Sbjct: 63 GAEAIREIKRRRETTKVLALTAHKKDSLIYRTLSAGADGYLLKNASRDILFQAMQTVLAG 122 Query: 120 YCYFPFSLNRFVGS------LTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 Y ++ + + LD LS +E V++ + +G N +AEK+ IS+K Sbjct: 123 RRYISPEISDLLIDDFLRHGRRDEASMLDLLSDREKQVLKLVAEGHGNKAVAEKLCISHK 182 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TV +K+ L KL S +L TFA + + Sbjct: 183 TVEKHKANLKRKLGTASTAELVTFAIEHGL 212 >UniRef50_D1B9T1 Two component transcriptional regulator, LuxR family n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B9T1_THEAS Length = 227 Score = 237 bits (606), Expect = 2e-61, Method: Composition-based stats. Identities = 56/209 (26%), Positives = 108/209 (51%), Gaps = 5/209 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH L +R LL + D+E++ E +G + V+ V LKPD+++ D+ +P + Sbjct: 4 IRIVLADDHRLFRDGLRRLLEMEKDMEVIGEAEDGDATVEMVSALKPDVLLFDIHMPKKD 63 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GIQV++ L+ S + ++A +D + + G + +V K GM +++AI + G Sbjct: 64 GIQVVKDLKAMGCSPRFVAITAFDDDDHITALSSVGIDAYVLKASGMAELLSAIRSVYRG 123 Query: 120 YCYFPFSLNRFV----GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 + Y + + ++ L L+ +E+ V+ +I G +N +IA KM +S KTV Sbjct: 124 HSYVDPKVAGKLLSTFNRRREERDLLSRLTPREMEVLYWISQGLNNGEIARKMVLSEKTV 183 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKIG 204 + S +++KL+ FA + + Sbjct: 184 KNHVSHILKKLDLVDRTQAAVFAWKRGLA 212 >UniRef50_Q3A5X6 Transcriptional regulator, LuxR family n=2 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A5X6_PELCD Length = 223 Score = 237 bits (606), Expect = 2e-61, Method: Composition-based stats. Identities = 60/214 (28%), Positives = 111/214 (51%), Gaps = 12/214 (5%) Query: 2 NAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 + DDHPL +R L + DI+ + E ++G AV++++ PD+ +IDVD+PG++G Sbjct: 8 KVFLADDHPLLRTGLRMSLSRFADIDFIGEASDGFKAVEKIKQNPPDVALIDVDMPGLSG 67 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 I + LRK+ ++I+S+ +D + + AGA+G+V K +N + I A G Sbjct: 68 IAAVRMLRKQYPDMTLLILSSYSDKHFIEEAMQAGADGYVLKSIDINELADLIRAFSCGE 127 Query: 121 CYFPFSLNRFVGSLTSDQQKLDS-----------LSKQEISVMRYILDGKDNNDIAEKMF 169 L + +Q+ +S L+++E ++ + G+ N +I+ +F Sbjct: 128 HPMSPYLMDLAVDWHASEQEEESPADKDDESDAFLTRREQQILSCLAQGQGNKEISNALF 187 Query: 170 ISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 IS +TV T+ + +KLE KS ++ A+ K+ Sbjct: 188 ISTETVKTHIKNIFKKLEVKSRLEAVIAAKEKKL 221 >UniRef50_C5SGD8 Two component transcriptional regulator, LuxR family n=2 Tax=Caulobacteraceae RepID=C5SGD8_9CAUL Length = 218 Score = 236 bits (605), Expect = 2e-61, Method: Composition-based stats. Identities = 52/206 (25%), Positives = 97/206 (47%), Gaps = 5/206 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPG-VN 59 + +I+DDH LA ++ +L + ++ E +G +A+ E L PD+V++DV + G ++ Sbjct: 6 LRILIVDDHALAREGLKAVLTSSGFSVVGEAADGPAAIALTEALCPDVVLMDVRLKGDMD 65 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + + +++++ + Y + AGA G+V K ++++ AAI G Sbjct: 66 GLEATRRIAALGLAARVLMLTLHDLPAYVREALAAGAAGYVLKDTAIDDLQAAIVRVAQG 125 Query: 120 YCYFPFSL----NRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 P L R + D L SL+ +E ++ I +G N +I + IS TV Sbjct: 126 QTALPLDLVSAAMRAPEPVERDPTALSSLTGREREIVHLIAEGMTNKEIGRSLGISPATV 185 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRN 201 + RL+ KL A R+ Sbjct: 186 KAHVERLIAKLGVTDRTQAAVLASRH 211 >UniRef50_C5UZV9 Two component transcriptional regulator, LuxR family n=1 Tax=Gallionella ferruginea ES-2 RepID=C5UZV9_9PROT Length = 213 Score = 236 bits (605), Expect = 2e-61, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 111/207 (53%), Gaps = 4/207 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH L ++ LL D++I E + G A+ + D++++D+++P + Sbjct: 2 IQILVVDDHALIRKGLKQLLEDTPDLKITGEASSGTEAISMLRAAPFDLMLLDINLPDKH 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+VL+ + Q III+S + YG AGA G+++K+ + +I AI +G Sbjct: 62 GIEVLKQFKSEQPQLKIIILSMYPEDQYGVRALKAGAMGYINKQSASDVLIKAIRHVLSG 121 Query: 120 YCYFPFSLN-RFVGSLTSDQQKL--DSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 Y L + + +L + Q+L +LS +E + + GK ++I++ M +S KTVS Sbjct: 122 KKYISEILAEQLLNNLIGESQELMHQNLSNREYQTLCLMASGKTLSEISQIMALSPKTVS 181 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKI 203 Y+SR++ K+ + + +A +++ Sbjct: 182 VYRSRMLAKMTFTNNAEAIHYAITHRL 208 >UniRef50_A1ATT6 Two component transcriptional regulator, LuxR family n=2 Tax=Desulfuromonadales RepID=A1ATT6_PELPD Length = 203 Score = 236 bits (605), Expect = 2e-61, Method: Composition-based stats. Identities = 51/198 (25%), Positives = 99/198 (50%), Gaps = 4/198 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I DDH + + NLL DI I AE +G +A++ + +L+PDI ++D+ +P ++ Sbjct: 2 IRVLIADDHVMFRQGLINLLTTAEDIHIAAECGDGATALELIRSLEPDIAVLDITMPKLD 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI + + + II++ +D AGA+GF+ K + +++A+ G Sbjct: 62 GISITRAMGNLGLATRAIILTMHDDPLMYGRAVSAGAHGFILKDDAYEELLSALRTVAAG 121 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 ++ + + + L+++E ++ I G N IA+ + IS KTV+ ++ Sbjct: 122 GTAISRAIQH---AAIEPEPPVAELTEREREILGLIAHGCTNRMIAQHLGISIKTVNNHR 178 Query: 180 SRLMEKLECKSLMDLYTF 197 + LM KL S +L + Sbjct: 179 TNLMGKLNLHSTAELVRY 196 >UniRef50_C6DD36 Two component transcriptional regulator, LuxR family n=1 Tax=Pectobacterium carotovorum subsp. carotovorum PC1 RepID=C6DD36_PECCP Length = 218 Score = 236 bits (605), Expect = 2e-61, Method: Composition-based stats. Identities = 49/204 (24%), Positives = 109/204 (53%), Gaps = 1/204 (0%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 +N ++DDH + + LL +NDI+++ + A + D+ +ID+ +P + Sbjct: 11 INVALVDDHIVVRSGFAQLLALENDIQVVGQYASAAQAWPHLLKQPIDVAVIDIAMPDES 70 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ +L LR+++ II+S + + + DAGA G+++K+ G ++ A+ +G Sbjct: 71 GLSLLTRLRQQRPQFRAIILSIYDTTAFVQSALDAGAGGYLTKRCGPEELVQAVRVVSSG 130 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 Y + ++L +L+ +E + +++G IAE++ +S+KTV ++ Sbjct: 131 GIYLCADALHAIRHQQQPPKELLALTPREREIFSLLINGISVKSIAEQLELSHKTVHVHR 190 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 + ++ KL+C+S ++L FA ++++ Sbjct: 191 ANILSKLQCESTVELVHFALQHQL 214 >UniRef50_A9DM99 Transcriptional regulator, LuxR family protein n=1 Tax=Kordia algicida OT-1 RepID=A9DM99_9FLAO Length = 212 Score = 236 bits (605), Expect = 2e-61, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 109/204 (53%), Gaps = 2/204 (0%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 +N II DDH + I +++LL I+++ E ++G A++ +E +I ++D+ +P +N Sbjct: 7 LNIIIADDHQIVIDGLKSLLVAHPHIKVVGEASDGEEALKLIENNTVNIAVLDISMPKMN 66 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + ++K+ I+I++ + + + GA+G++ K G + A+E NG Sbjct: 67 GVETTKIIKKKYPYIKILILTMHDGDEFIHELFEIGADGYILKNRGKEEFVEALETINNG 126 Query: 120 YCYF-PFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTY 178 Y LN + ++ + K +K+E V+R I+ ++I+ K+ I+N TV T+ Sbjct: 127 EEYIKGKVLNVLLDAVRKPKSKTIQFTKREKDVLRLIVGDHTTSEISAKLNIANSTVETH 186 Query: 179 KSRLMEKLECKSLMDLYTFAQRNK 202 + L+EK KS + L +A N Sbjct: 187 RRNLIEKTGVKSSLGLVRYAVENG 210 >UniRef50_C0A9E4 Response regulator receiver protein n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A9E4_9BACT Length = 227 Score = 236 bits (605), Expect = 3e-61, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 99/205 (48%), Gaps = 6/205 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 ++ II+DDH L + I +LL DI ++A+ A + V+ PDIV+ D+ +PGV Sbjct: 4 ISVIIVDDHQLMLEGIASLLRATPDITLVAKAQSAKEAFELVKQHNPDIVVADLSMPGVT 63 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ +++ ++ II+++ GAN FV K + +++ I G Sbjct: 64 GLDLIQQIKDAGLLTRIIMLTMHRTRLTVHEAFSVGANAFVLKSDAFEDLVDIIHRVHEG 123 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 G + +LS +E V+ I G N +I+ ++ IS+KTV T++ Sbjct: 124 ENTLTSK-----GLPPYEPACAATLSPREKDVLEGISAGLSNKEISRRLAISSKTVETHR 178 Query: 180 SRLMEKLECKSLMDLYTFAQRNKIG 204 SR+M+KL +L A R+ +G Sbjct: 179 SRIMQKLNVTKATELVREAMRSGLG 203 >UniRef50_A5URU4 Two component transcriptional regulator, LuxR family n=3 Tax=Chloroflexi (class) RepID=A5URU4_ROSS1 Length = 242 Score = 236 bits (605), Expect = 3e-61, Method: Composition-based stats. Identities = 53/218 (24%), Positives = 97/218 (44%), Gaps = 16/218 (7%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +IIDDHPL IR L + D+E++ E G A++ E L PD+V++D+++PG+N Sbjct: 5 IRVLIIDDHPLFRQGIRWSLEEAGDMEVVGEAENGQEAIKLAERLVPDVVLVDINLPGLN 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++V +++R+ +I++S D GA + SK +++ I G Sbjct: 65 GLEVARVIKRREPRIGLIVISVYEDDDQLFQAIKVGAAAYSSKDVHPRDLVRMIREVARG 124 Query: 120 YCYF-------PFSLNRFVGSLT--------SDQQKLDSLSKQEISVMRYILDGKDNNDI 164 P R + L+ +EI ++ I G N +I Sbjct: 125 KYLINDSVIAKPHVATRVLHQFRELAATEDERTSALFAPLTSREIEILDCIARGLSNKEI 184 Query: 165 AEKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNK 202 A ++ IS +TV + + ++ KL+ +A + Sbjct: 185 ASQLSISGQTVKNHITSILSKLQVNDRTMAVIYAIQRG 222 >UniRef50_A9FM25 DNA-binding response regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FM25_SORC5 Length = 233 Score = 236 bits (604), Expect = 3e-61, Method: Composition-based stats. Identities = 57/209 (27%), Positives = 103/209 (49%), Gaps = 6/209 (2%) Query: 1 MNAIIIDDHPLAIAAI-RNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 ++ +IDDHP+ R L + D+ ++ + A++ + KPD+V++D++IP + Sbjct: 22 LHIYLIDDHPVVREGFARALSDEPDMVVVGQAGTAADALRETASCKPDVVLVDLNIPDRD 81 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI++L LR + ++++S +D F AGA G++ K + +I I G Sbjct: 82 GIELLGALRAQLPQAKLLVLSGYDDEFRVAEALRAGAQGYLVKTSKLEEVIEGIRRIATG 141 Query: 120 YCYFPFSLNRFV-----GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 S+ V + LD+L+ +E V+R + G + A ++ IS KT Sbjct: 142 GAPLSSSIAGAVVRAMRKPASEGSGGLDALTPRERQVLRLLAAGVSTRETAARLTISPKT 201 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 V T++ R+ KL CKS ++L A R + Sbjct: 202 VETHRVRIYAKLGCKSAVELTRIAVRTGL 230 >UniRef50_Q1AST2 Two component transcriptional regulator, LuxR family n=2 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AST2_RUBXD Length = 232 Score = 236 bits (604), Expect = 3e-61, Method: Composition-based stats. Identities = 49/211 (23%), Positives = 98/211 (46%), Gaps = 8/211 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + I++DDH L A R +L + D E++ E + G A++ L+PD+V++D+ +PGV+ Sbjct: 11 VRLIVVDDHDLIRAGFRLVLEQEPDFEVVGEASSGREAIELCRRLRPDVVVMDLAMPGVD 70 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ +++ +++V+A D Y AGA G+V K + +I+A+ +G Sbjct: 71 GLEATRRIKEEHPQVAVLVVTALEDPEYMLEALKAGAAGYVLKSSPLPRVISALRRLLSG 130 Query: 120 YCYFPFSLNRFVGSLTSDQ-------QKLDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 L + + + + L+ +E V+ + G+ N +IA ++ IS Sbjct: 131 ESPLNQELAARLIQDLARRPGGGGNPPPAEELTAREREVLVLMARGRTNPEIARELVISR 190 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 T ++ ++ KL A + Sbjct: 191 GTAKSHVQNIIRKLGVSDRTQAVARAFELGL 221 >UniRef50_C4XMF2 NarL family two-component response regulator n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XMF2_DESMR Length = 218 Score = 236 bits (604), Expect = 3e-61, Method: Composition-based stats. Identities = 51/212 (24%), Positives = 102/212 (48%), Gaps = 10/212 (4%) Query: 2 NAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 +I+DDHPL ++ +L + + E A++ + +PD+ ++D+ +P +G Sbjct: 5 RLLIVDDHPLFREGLKAILRRDPSYAVAGEAGSYAEALRTAKDCRPDLAVLDISLPDRSG 64 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 IQ+ LR+ S I++VS Y GA G+++K +N+++ + A G Sbjct: 65 IQLARELRQMLPSLGILMVSMHAKVDYVAEALKVGALGYLTKDAATDNLLSGLRAVAAGQ 124 Query: 121 CYFPFSLNRFV---------GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFIS 171 + +L+ + + DSL+ +E VMR +++G N ++A + IS Sbjct: 125 PWLDPTLSVEISRSLLAKTPRAEEESHSAYDSLTPREREVMRLVVEGLSNKEVAAALEIS 184 Query: 172 NKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 KT ++ LM KL ++ ++L +A + + Sbjct: 185 VKTAEHHRGSLMRKLGMQNSVELVRYATKLGL 216 >UniRef50_Q5NZZ3 Two-component system response regulator n=3 Tax=Betaproteobacteria RepID=Q5NZZ3_AZOSE Length = 210 Score = 236 bits (604), Expect = 3e-61, Method: Composition-based stats. Identities = 57/207 (27%), Positives = 107/207 (51%), Gaps = 4/207 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I+DDH + + +R +L D+ + E ++G SA+ ++ + K D++++D+++ G + Sbjct: 2 IELLIVDDHTIFRSGLRRMLSDEADMHVADEASDGASALAKIRSGKFDVILMDINMAGRS 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ LE+LR + +I++S + Y A AN ++SK ++AAI G Sbjct: 62 GLDTLESLRAERPELPVIMLSMYPEEQYAVLALRARANAYLSKDVEPQELLAAIRHVVGG 121 Query: 120 YCYFPFSLNRFVG---SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 Y + + + L+ +E+ VM I+ G D+ +M +S KTVS Sbjct: 122 GRYVSPRSAANLLMQMDRAREGAPHEKLTAREMQVMMKIVRGMSLTDVGVQMCLSVKTVS 181 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKI 203 TY+ R++EKL S +L +A RN + Sbjct: 182 TYRMRILEKLSLSSNAELVQYAMRNGL 208 >UniRef50_A2SCN0 Two-component response regulator n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SCN0_METPP Length = 210 Score = 236 bits (603), Expect = 4e-61, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 105/205 (51%), Gaps = 3/205 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH + + LL ++DI ++AE +GG A+ + L+P +V+ID+ +PG+ Sbjct: 3 IRVMLVDDHAIVREGYKRLLELQSDIVVVAEAGDGGEALNQWRALRPAVVVIDLGLPGMG 62 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++++ LR+R + ++ S D + AGA G+V+K + ++AA+ G Sbjct: 63 GLELIARLRQRDEACRMLAFSMHRDAVWVAQALRAGALGYVTKSSAPSQLVAAVREVNQG 122 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDS--LSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 ++ V S D Q + LS +E VMR ++ G+ +IA+ + +S KTV Sbjct: 123 RRVLSPDVSGEVASALLDPQDSAAHGLSPREFEVMRLLVGGRTPQEIAQSLSLSVKTVHN 182 Query: 178 YKSRLMEKLECKSLMDLYTFAQRNK 202 ++ KL S +L A + Sbjct: 183 VHYQIKSKLGTASDFELARMAWQRG 207 >UniRef50_Q0B0G6 Response regulator receiver protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0B0G6_SYNWW Length = 213 Score = 236 bits (603), Expect = 4e-61, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 100/206 (48%), Gaps = 5/206 (2%) Query: 2 NAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 +I DDH L +R LL ++I+++ E+ +G A+ KPDI+I+DV++PG +G Sbjct: 5 RVVIADDHVLVREGLRKLLELDSNIKVIDEVGDGQGAINIARKEKPDIIIMDVNMPGTDG 64 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 I +++ S II ++ AGA+ ++ K + ++ I NG Sbjct: 65 IVATRVIKRELPSVRIIALTVYEGEE-VVDMVKAGASAYILKDVAGSELVDTIHRVMNGE 123 Query: 121 CYF-PFSLNRFVGSLTSDQQKLD--SLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 P NR V L + + L+K+E V+ ++ G N ++AE MFIS KTV Sbjct: 124 VVIYPRVANRLVRELRQSENRKSEIRLTKREKDVLTLLVKGNTNKEMAEVMFISEKTVKN 183 Query: 178 YKSRLMEKLECKSLMDLYTFAQRNKI 203 + + + KL K +A +N+I Sbjct: 184 HLTSIFRKLGVKDRTHAAIYALKNRI 209 >UniRef50_Q5WI37 Two-component response regulator n=5 Tax=Bacillaceae RepID=Q5WI37_BACSK Length = 210 Score = 236 bits (603), Expect = 5e-61, Method: Composition-based stats. Identities = 49/208 (23%), Positives = 107/208 (51%), Gaps = 5/208 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ +D + ++ ++ DI++ E +G A++ ET D+ I+D+ +P ++ Sbjct: 2 IKVLLAEDQVMVRQGLKAMIETDEDIKVTGEADDGRKALRLCETHVFDVAILDIRMPEMD 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ + +R R I++++ +DH Y G NG++ K ++I +I++ NG Sbjct: 62 GIEAAKMMRLRYPKMKILMLTTFDDHQYVVESLKLGVNGYMLKNGDTESLIRSIKSTING 121 Query: 120 YCYF-PFSLNRFVGSLTSDQQKL---DSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 + V +L +Q++ SL+ +E +++ I +G +N +IAE++ +S TV Sbjct: 122 GLSLEDQVAAKVVPTLLQNQEEPSIDPSLTPRERAILTCIGEGLNNKEIAERLGLSVGTV 181 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKI 203 S + +KL + L +A R+++ Sbjct: 182 KNQTSHIFDKLALRDRTQLAIYAIRHRL 209 >UniRef50_Q47DK2 Two component transcriptional regulator, LuxR family n=1 Tax=Dechloromonas aromatica RCB RepID=Q47DK2_DECAR Length = 211 Score = 236 bits (603), Expect = 5e-61, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 105/205 (51%), Gaps = 3/205 (1%) Query: 2 NAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 I+ DD L A IR ++ +I AE T+G A+ ++ L+PD+V++D+ +PG +G Sbjct: 5 RIILADDQLLIRAGIRAIVETLPGFQIEAECTDGYEAISAIQRLQPDVVLLDIAMPGPSG 64 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 I+V T+R+ + I+++S+ + + AG NG++ K + ++ A+E +G Sbjct: 65 IEVARTIRQFDPNTKILVLSSVDRPEIIEQALAAGVNGYLLKDFVLAELLQALEMVLHGE 124 Query: 121 CYFPFSLNRFVGSLTSDQQKLD--SLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTY 178 + + ++ L+ ++ ++R + G+ +IA + IS KTV + Sbjct: 125 RFLSPKIREMSRFSDAEGTSGSGTQLTARQTEILRLVASGRTTKEIARDLGISPKTVEFH 184 Query: 179 KSRLMEKLECKSLMDLYTFAQRNKI 203 +SRLME++ + L FA + + Sbjct: 185 RSRLMERIGVHDVTGLTRFALQTGV 209 >UniRef50_Q5NZX4 Two-component response regulator n=3 Tax=Betaproteobacteria RepID=Q5NZX4_AZOSE Length = 211 Score = 235 bits (602), Expect = 5e-61, Method: Composition-based stats. Identities = 50/201 (24%), Positives = 106/201 (52%), Gaps = 3/201 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH L ++ + D+E++AE T GG + ++T ++++D+ +PG++ Sbjct: 2 IRVLVADDHFLVREGLKMTIAAMQDVEVVAEATNGGEVLAAIKTCNAHVLLLDMSMPGLS 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ ++ ++ I+++S + +GA+G+V+K +G +++AI +G Sbjct: 62 GVDLVRRVKSEWPGLPILVLSMYGETQLAAKVLQSGASGYVTKGKGREILLSAIRKVASG 121 Query: 120 YCYFPFSLNRFV--GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 + Y L + + L+ +E ++R + GK IA ++ +S KTVST Sbjct: 122 HRYIDPDLAEKILFDVRMPTASVQEQLTHRESQILRMLQAGKSVTQIANELSVSPKTVST 181 Query: 178 YKSRLMEKLECKSLMDLYTFA 198 +K R M+KL C++ ++L +A Sbjct: 182 HKIRAMQKLHCQNNVELLKYA 202 >UniRef50_C6WV69 Two component transcriptional regulator, LuxR family n=2 Tax=Betaproteobacteria RepID=C6WV69_METML Length = 216 Score = 235 bits (602), Expect = 5e-61, Method: Composition-based stats. Identities = 48/207 (23%), Positives = 104/207 (50%), Gaps = 4/207 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + II DDH + A ++ +L + DI ++AE A++ + D++++D+ +P + Sbjct: 8 IKVIIADDHAILRAGLKQILSETEDILVIAEAQNANEAIKLGSQPEADVLLLDISLPDRS 67 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ L+ +++ ++++S + Y +GA G++ K+ + ++ AI+ G Sbjct: 68 GMEALKYIKRENSHIAVLMLSMHREDEYAIRALKSGAAGYLCKQSASSELVNAIQTVARG 127 Query: 120 YCYFPFSLNRFVGS---LTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 Y + + + + + LS +E I G D+A K+ +S KTVS Sbjct: 128 KKYITPEVAEILANQIGRDDQKAPHELLSDREYQTFIMIASGLSVTDVANKLSLSVKTVS 187 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKI 203 Y++RL+EK++ K +L +A ++ + Sbjct: 188 MYRARLLEKMQLKHNAELTHYAFKHNL 214 >UniRef50_UPI00017452CB response regulator with a HTH DNA-binding domain n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017452CB Length = 235 Score = 235 bits (602), Expect = 5e-61, Method: Composition-based stats. Identities = 51/210 (24%), Positives = 101/210 (48%), Gaps = 11/210 (5%) Query: 6 IDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVL 64 +DDH + ++ L+ + D+ + A+Q++E KPD++ +D+ +PG NG++++ Sbjct: 24 VDDHTMLRDGLQKLVESQPDLCCYWTASNTQDALQQLEQGKPDMLAVDISLPGRNGLELI 83 Query: 65 ETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYFP 124 + I+++S ++ FY + AGA G+V K ++ AI G Y Sbjct: 84 KDALALHPDLPILVISMHDESFYAQRVLKAGARGYVMKDAESTTLLQAIRNVLEGGRYVS 143 Query: 125 FSLNRFVGSLTSDQ------QKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTY 178 +++ + S + + LS +E V + I +GK I + + IS KTV + Sbjct: 144 PAMSAQIMEAFSGRGAARPVDGVQRLSDREFEVFQLISEGKSTQQIGDALNISVKTVEVH 203 Query: 179 KSRLMEKLECKSLMD----LYTFAQRNKIG 204 ++ + EKL+ + +A+R K+G Sbjct: 204 RAHIREKLKLEDGASVLRYAVRWAERQKLG 233 >UniRef50_A0M4P6 Two-component system response regulator n=5 Tax=Flavobacteriales RepID=A0M4P6_GRAFK Length = 205 Score = 235 bits (602), Expect = 5e-61, Method: Composition-based stats. Identities = 46/203 (22%), Positives = 97/203 (47%), Gaps = 3/203 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I +DH I I+ + DIE + G ++ KP+++I D+ +P ++ Sbjct: 2 IRLVIAEDHTALIDGIKVFFEYEEDIEFVGFANNGQELIELTRRKKPNLIITDIRMPVMD 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GIQ + + + + II S + + +AGA+G++ K + ++ AI G Sbjct: 62 GIQATKEILEEFPNIKIIAFSMFDQDKAVQQMLEAGASGYILKNSSLKELLYAIRKVHEG 121 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 Y+ ++ V + + L+ ++ +++ I G+ N +IA+++FI TV T++ Sbjct: 122 EHYYDPNIT--VKQKSVSPKSKAVLTGRQREILKLIGQGRTNQEIADQLFIGKTTVETHR 179 Query: 180 SRLMEKLECKSLMDLYTFAQRNK 202 ++ KL + +L +A K Sbjct: 180 KNMIRKLGLQGAGELLRYALEKK 202 >UniRef50_Q47FR0 Two component transcriptional regulator, LuxR family n=9 Tax=Betaproteobacteria RepID=Q47FR0_DECAR Length = 218 Score = 235 bits (602), Expect = 6e-61, Method: Composition-based stats. Identities = 46/208 (22%), Positives = 100/208 (48%), Gaps = 5/208 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I DDH + ++++L DI + AE + G A+ + D +++D+ +PG N Sbjct: 2 IRTLIADDHDILRIGLKHILSDTGDIVVTAEASNGIEALVELRKGTFDALVLDLTMPGRN 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI++++ ++ I+I+S + Y AGA+G++ K + AI +G Sbjct: 62 GIELIKQIKGEFPKLPILILSMHKEDIYAVRSLKAGASGYLCKDSAETLLADAIRKVADG 121 Query: 120 YCYFPFSLNRFVG----SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 + ++ + L+ +E + IL G +I ++ +S KTV Sbjct: 122 GLFINQAVAEKLTLQILHGRDTDAPHTGLTDREHQIFLMILQGLGVTEIGRQLNLSVKTV 181 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKI 203 ST+K+ ++ K+ ++ +L +A ++++ Sbjct: 182 STHKASILAKMNLRNSAELVRYAIQHRL 209 >UniRef50_B9E7V9 Two-component response regulator n=65 Tax=Staphylococcaceae RepID=B9E7V9_MACCJ Length = 210 Score = 235 bits (602), Expect = 6e-61, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 105/205 (51%), Gaps = 2/205 (0%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLK-PDIVIIDVDIPGV 58 M+ I++DDH + ++ LL + ++A+ G ++ ++ + PD++I+D+ +P + Sbjct: 4 MDIILVDDHHIVRQGMKFLLSTEASFNVIADFNNGRELLEHLDETQLPDLIIMDLVMPEL 63 Query: 59 NGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKN 118 NGI+ ++ + ++++S+ D + DAGA+G+ K +I I+ Sbjct: 64 NGIEATRRIKAKYPDVKVLVLSSFIDEEHVLGVMDAGADGYEMKDSEPKALINTIKQIAA 123 Query: 119 GYCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTY 178 G F + + S + + LSK+E+ V++ + +G N +IAEK+F+S KTV T+ Sbjct: 124 GEQIFHPDVMKVRKSGMNLAHLRNPLSKRELEVLKAMSEGLTNKEIAEKLFVSEKTVKTH 183 Query: 179 KSRLMEKLECKSLMDLYTFAQRNKI 203 S + KLE + + K+ Sbjct: 184 VSHIFAKLEVGDRTQASMYGVKYKL 208 >UniRef50_D1BCA8 Two component transcriptional regulator, LuxR family n=18 Tax=Bacteria RepID=D1BCA8_SANKS Length = 234 Score = 235 bits (601), Expect = 7e-61, Method: Composition-based stats. Identities = 52/204 (25%), Positives = 94/204 (46%), Gaps = 3/204 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDHP+ A I +L +++DIE++ E +G AV TL PD+VI D+ +P ++ Sbjct: 29 VRVVVADDHPVVRAGIVGMLGVESDIEVVGEAEDGRQAVDLARTLSPDVVITDLRMPVLD 88 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ + + +++++ +AGA G++ K ++A I A G Sbjct: 89 GVGATREIVALPGTVRVVVLTTYETDGEILRAVEAGATGYLLKDTPRAELVAGIREAARG 148 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 S+ + S + D L+ +E+ V+R + G N + ++FIS TV T+ Sbjct: 149 QTVLTPSVATRLVSQVG--SRADRLTPREVEVLRAVARGLSNAAVGHELFISETTVKTHL 206 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 R KL T A + Sbjct: 207 IRAFGKLGVNDRTHAVTVATDRGL 230 >UniRef50_A1ZEE6 Two-component response regulator n=2 Tax=Microscilla marina ATCC 23134 RepID=A1ZEE6_9SPHI Length = 213 Score = 235 bits (601), Expect = 8e-61, Method: Composition-based stats. Identities = 55/207 (26%), Positives = 112/207 (54%), Gaps = 8/207 (3%) Query: 5 IIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQ-RVETLKPDIVIIDVDIPGVNGIQ 62 I++DH + ++ LL K ++++LAE + + +PDIV+ D+++PG++G+ Sbjct: 6 IVEDHTIVRQGLKQLLAKYAEMKVLAEFGVPDQIMDNLAKGERPDIVLCDINLPGMDGLA 65 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 + E ++++ III++ FY DAGA+G+ K + +I I+ NG Y Sbjct: 66 LTEKIKQKYPDQKIIILTMHQKEFYVLKAFDAGADGYFHKDTEESELIMGIKKIYNGQKY 125 Query: 123 FPFSLNRFVGSL------TSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 F S+++ + + +S + L +L+ +E V+ ++ G N +I +K+ IS +TV Sbjct: 126 FCQSVSQILINRLLDTKNSSGKTLLPTLTFREKEVLEQVVAGLGNREIGDKLCISTRTVE 185 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKI 203 +++ ++ K K+ ++L FA N + Sbjct: 186 NHRANILRKFGLKNTVELVKFAIENSL 212 >UniRef50_Q0A525 Two component transcriptional regulator, LuxR family n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A525_ALHEH Length = 214 Score = 235 bits (600), Expect = 8e-61, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 101/205 (49%), Gaps = 5/205 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKND--IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGV 58 + +++DDH + A R LL + ++ E G SA + + D+V++D+ +PG+ Sbjct: 10 LTLLLVDDHAVVRAGYRRLLEQASRCWQVT-EADSGESAYRACARERFDVVVMDISLPGI 68 Query: 59 NGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKN 118 +G++ L L++R ++I S + + + GA G+++K ++ A++ Sbjct: 69 SGLETLARLQRRAPEIRVLIFSMHEEPVFAEQALSGGAAGYITKSSAPEVLVEAVQRIAA 128 Query: 119 GYCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTY 178 G Y + G +D L SLS +E + R + +G + +IA + IS KTV+ Y Sbjct: 129 GGHYLGPDVRCRHGD--ADTAGLQSLSAREFEIFRLLAEGCGSAEIARLLNISYKTVANY 186 Query: 179 KSRLMEKLECKSLMDLYTFAQRNKI 203 S + EKL ++ ++ A R + Sbjct: 187 GSGIREKLALNNVAEMTRLAIRAGV 211 >UniRef50_D2PZN7 Two component transcriptional regulator, LuxR family n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PZN7_9ACTO Length = 242 Score = 235 bits (600), Expect = 9e-61, Method: Composition-based stats. Identities = 53/217 (24%), Positives = 97/217 (44%), Gaps = 14/217 (6%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DD L A R LL +DI ++ E +G AV PD+V++D+ +PG++ Sbjct: 16 LRVVLADDQALLRGAFRTLLDSTDDIAVVGEAGDGEEAVALTRRTHPDVVVMDIQMPGMD 75 Query: 60 GIQVLETLRKRQYSGI---IIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAA 116 G+ + ++I++ Y AGA+GF+ K + +I A+ Sbjct: 76 GLTATAQICA-DPDLRASRVLILTTYETDEYVAQALRAGASGFIGKGIDADGLIDAVRTI 134 Query: 117 KNGYCYFPFSLNRF---------VGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEK 167 +G + R V + D ++L +L+ +E ++ + G N +IA++ Sbjct: 135 ADGDALLSPAATRSLVARFLATPVDTAPRDVERLVALTPREREMVALVATGLSNLEIADR 194 Query: 168 MFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKIG 204 M++S TV + R M KLE + L A R + Sbjct: 195 MYVSPFTVRAHVQRAMTKLEARDRAQLVAIAYRTGLA 231 >UniRef50_B5EEC0 Two component transcriptional regulator, LuxR family n=2 Tax=Geobacter RepID=B5EEC0_GEOBB Length = 216 Score = 235 bits (600), Expect = 9e-61, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 104/207 (50%), Gaps = 4/207 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + I+ DDH + +R LL + D+ ++AE +G S V++ PD+V++D+ +PG+N Sbjct: 3 IRIILADDHVMFREGMRALLEREEDMVVVAEAGDGVSVVEKTLENMPDVVVLDLSMPGMN 62 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G + + ++ III+S +D Y G F+ K+ ++ A+ Sbjct: 63 GTEAASVIHQKVPGIGIIILSMHSDRQYVIEALKLGVKSFILKEWAFQELVTAVRCVFKD 122 Query: 120 YCYFPFSLNRFVGSLTSDQQKL---DSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 Y L+ + S +D+ K SL+ +E R ++ GK+ +I ++ IS+KTV Sbjct: 123 TSYLSPRLSDIIISGLADEGKPLGKYSLTPREEQAYRLLVAGKNCKEIGYELKISSKTVE 182 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKI 203 TY+ ++M+KL ++ L A + I Sbjct: 183 TYRLKVMKKLNISNIAQLVNHAVQEGI 209 >UniRef50_C5B7B5 Nitrate/nitrite response regulator protein NarP n=13 Tax=Gammaproteobacteria RepID=C5B7B5_EDWI9 Length = 215 Score = 235 bits (600), Expect = 9e-61, Method: Composition-based stats. Identities = 51/197 (25%), Positives = 100/197 (50%), Gaps = 1/197 (0%) Query: 2 NAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 +I+DDHPL +R LL + ++AE + G A+ +PD++++D+++ G++G Sbjct: 12 RVMIVDDHPLMRRGVRQLLELDSVFSVVAEASNGSEAIALAGRSQPDLILLDLNMKGLSG 71 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 + L+ LR III++ + DAGA+ ++ K ++A I A G Sbjct: 72 LDTLKALRSEGIDARIIILTVSDARSDVYALVDAGADSYLLKDSEPEALLAQIRQAAEGR 131 Query: 121 CYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKS 180 F S++ ++ + + L L+++E+ V++ ++ G N IA ++ IS +TV + Sbjct: 132 SVFSESVSAYLSTRSEIADPLADLTERELDVLQEVVRGMSNKQIAAQLHISEETVKVHIR 191 Query: 181 RLMEKLECKSLMDLYTF 197 L+ KL +S + Sbjct: 192 NLLRKLNVRSRVAATVL 208 >UniRef50_C6C0G1 Two component transcriptional regulator, LuxR family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6C0G1_DESAD Length = 218 Score = 235 bits (600), Expect = 1e-60, Method: Composition-based stats. Identities = 54/204 (26%), Positives = 101/204 (49%), Gaps = 8/204 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I DDH L ++ +L ++ I +L G AV+ L PD+ ++D+ +P + Sbjct: 5 VTVVIADDHALVREGLKTILKSQSGISVLGMAENGEEAVRLCRRLNPDVALMDLSMPIKS 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+Q ++ L + ++A + + DAGA+G+V K ++ AIE G Sbjct: 65 GVQAIQELSGEG-KTKFLALTAHVEPDHIYSALDAGASGYVLKTSSSKELVMAIETVMQG 123 Query: 120 YCYFPFSLNRFVGSLTSDQQK------LDSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 Y ++ V + + L+SL+++E V++ +L G N +IA+ + IS K Sbjct: 124 KVYLAPDISAEVAKGFLQRDRSNSCDSLESLTEREREVLKQVLAGYKNREIADLLVISVK 183 Query: 174 TVSTYKSRLMEKLECKSLMDLYTF 197 TV ++S M+KL +S +L + Sbjct: 184 TVEKHRSNFMKKLGLRSKAELKAY 207 >UniRef50_C3JVF4 Two component transcriptional regulator, LuxR family n=2 Tax=Rhodococcus erythropolis RepID=C3JVF4_RHOER Length = 220 Score = 235 bits (600), Expect = 1e-60, Method: Composition-based stats. Identities = 44/214 (20%), Positives = 95/214 (44%), Gaps = 11/214 (5%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 ++ +I DD + L +I ++ G A ++V L+PD+V++D+ +P + Sbjct: 2 IDVLIADDQQVVRQGFELFLSGHPEIRVVGHAKTGVEAYEQVRALRPDVVLMDIRMPHGD 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ + +I+++ + Y D+GA GF+ K + +A+ G Sbjct: 62 GLTATREVLAEFPGTRVIVITTFDLDEYVFEALDSGAAGFLLKDADPEELSSAVLTVAEG 121 Query: 120 YCYFPFSLNRFVGSLTSDQQKLD----------SLSKQEISVMRYILDGKDNNDIAEKMF 169 L + + ++ LS +E+ V++ + G NNDIA+ + Sbjct: 122 GSVLSPRLTSRLIVEFARRKPAPMSTARSGSDHGLSAREMDVVQLLSQGLGNNDIADSLS 181 Query: 170 ISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 + TV ++ S + +KL+ ++ + + +A RN + Sbjct: 182 LEQSTVKSHISNICKKLQVRTRVQIVIWAYRNNV 215 >UniRef50_B9MPQ9 Two component transcriptional regulator, LuxR family n=2 Tax=Clostridia RepID=B9MPQ9_ANATD Length = 211 Score = 235 bits (600), Expect = 1e-60, Method: Composition-based stats. Identities = 43/201 (21%), Positives = 102/201 (50%), Gaps = 5/201 (2%) Query: 2 NAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGI 61 +I+DD+P + ++ +L + E+++ T A++ +E D+V++D+ +P ++GI Sbjct: 5 KVLIVDDNPAVLDGLKIILELENFEVVSLCTNAKEAIEFLEKKHADVVLMDIRMPVMDGI 64 Query: 62 QVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 121 + ++ + + +II++ + Y K GA+G++ K +I+ +I + +G Sbjct: 65 EGTFNIKTKFPNVKVIILTTFCEEDYIKKSLSFGADGYILKSSDAKHIVNSILSVLDGKV 124 Query: 122 YFPFSLNRFVGSLTSDQ-----QKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 + ++ + +K +L+++E+ + + I G N +IA +FIS TV Sbjct: 125 VMDKEIALYISDVLKRTSKQLLEKTQNLTERELEIAKLISQGYSNKEIARMLFISEGTVR 184 Query: 177 TYKSRLMEKLECKSLMDLYTF 197 Y + +++KL K+ + + Sbjct: 185 NYITSILQKLNLKNRTQIAVY 205 >UniRef50_C4ZM15 Two component transcriptional regulator, LuxR family n=1 Tax=Thauera sp. MZ1T RepID=C4ZM15_THASP Length = 226 Score = 234 bits (599), Expect = 1e-60, Method: Composition-based stats. Identities = 49/209 (23%), Positives = 102/209 (48%), Gaps = 6/209 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 M +++DDH L A IR LL + + E + G AV+ T++PD+V++D+ + ++ Sbjct: 4 MRVLLVDDHSLVRAGIRALLGSIAGVAGIEEASSGRQAVELAATMQPDLVLMDIAMDDMD 63 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ T+ ++I+S + + + GA G++ K + + AI A G Sbjct: 64 GLAATRTIAAAHPHIKVVILSMHDTGDFFEQALRCGARGYLLKDAAVAELEMAIAAVMRG 123 Query: 120 YCYFPFSLNR-----FVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 Y +++R + D++ L+ ++ ++ I G +IA ++ +S KT Sbjct: 124 DVYLSPAVSRHLVGNMLARPPEDERAASVLTPRQTEILELIGSGLGTKEIARRLDLSVKT 183 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 V +++++ME+L + + +L A R + Sbjct: 184 VEAHRAQIMERLGVRDIANLLLEAARRGL 212 >UniRef50_A5FAZ3 Two component transcriptional regulator, LuxR family n=2 Tax=Bacteroidetes RepID=A5FAZ3_FLAJ1 Length = 219 Score = 234 bits (598), Expect = 1e-60, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 110/205 (53%), Gaps = 11/205 (5%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH I++LL + +IE++ E +G A++ V KPD++I+D+ +P + Sbjct: 5 IRVVLADDHVFVRDGIKSLLENEANIEVVGEAIDGADALEVVTATKPDLLIVDIRMPNLT 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+V+E LR + II++S Y AGA+G++ K + A+ A +G Sbjct: 65 GIEVVEKLRSENNNVKIIMLSMHESEEYVLKSIKAGADGYLLKGSSKEEFLKALHAVSSG 124 Query: 120 YCYFPFSLNRFVGSLTSDQ----QKLDSL------SKQEISVMRYILDGKDNNDIAEKMF 169 YF ++ + S ++ + +L +K+E ++ +L GK N +IAE + Sbjct: 125 GKYFSGDISSILISQLTNSTASLEPKQTLGEEMMITKREKEILTLLLSGKGNKEIAEALE 184 Query: 170 ISNKTVSTYKSRLMEKLECKSLMDL 194 IS +T ++ LM+KL+ K+LM+L Sbjct: 185 ISKRTAEVHRFNLMKKLKVKNLMEL 209 >UniRef50_B4DAD9 Two component transcriptional regulator, LuxR family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAD9_9BACT Length = 237 Score = 234 bits (598), Expect = 2e-60, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 98/206 (47%), Gaps = 7/206 (3%) Query: 2 NAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 + +DDHP+ + +L + D++I T G AVQ E PD+V++D+++PG +G Sbjct: 17 RLLFVDDHPVVLDGYSLMLKSQPDLDICGLATNAGDAVQLFEKEHPDLVVMDLNLPGRSG 76 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 + +++ L + S +++ S ++ Y + AGA G+V+K ++ AI G Sbjct: 77 LDLVKDLLALEPSARVLVCSMHDEMLYAERSLRAGAKGYVTKDCSAALLLTAIRRVLGGN 136 Query: 121 CYFPFSLNRFV------GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 + L V L+ LS +E V +GK +I K+ +S KT Sbjct: 137 IHVSERLAVRVLEAFAGARPRGSHSPLEKLSDREFEVFVLFGEGKTAKEIGAKLNLSPKT 196 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQR 200 VS ++ + +K+E + ++ A R Sbjct: 197 VSVHRDHIKQKMEFGTSAEMIRQAVR 222 >UniRef50_B5JFN7 Response regulator receiver domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JFN7_9BACT Length = 220 Score = 234 bits (598), Expect = 2e-60, Method: Composition-based stats. Identities = 44/215 (20%), Positives = 99/215 (46%), Gaps = 12/215 (5%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DD L + ++ LL +D +EI+ E G A++ L+P IV++D+++P ++ Sbjct: 5 IQIVLADDQALFLEGLKTLLSLDDSLEIVGECHNGQEALEACRRLRPQIVLMDLNMPVMD 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ + +++ ++ ++ +D AG++G++ K ++ AI A +G Sbjct: 65 GVAATKAIKQELPEVNVLTLTTFDDDERVFEALKAGSSGYLLKDTPSKQLVEAIRAVSSG 124 Query: 120 YCYFPFSLNRFVGS-----------LTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKM 168 + S+ V + + Q + LS++E V+ ++ G N +IA + Sbjct: 125 ESFLQPSIASKVLAEFSRMSGPAAVKKAPVQLREPLSQREEQVLVWLSRGCSNKEIASHL 184 Query: 169 FISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 ++ TV + S ++ KL A+ + Sbjct: 185 DLAEGTVKNHVSNVLGKLGVLDRTQAALMARDLGL 219 >UniRef50_B9PAD6 Predicted protein n=33 Tax=cellular organisms RepID=B9PAD6_POPTR Length = 326 Score = 233 bits (597), Expect = 2e-60, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 105/205 (51%), Gaps = 7/205 (3%) Query: 2 NAIIIDDHPLAIAAIRN-LLIKNDIEILAELTEGGSAVQRVETLK----PDIVIIDVDIP 56 ++IDDH L +R L ++ +E++ E +G +A+ + + PD+VI D+ + Sbjct: 116 RVLLIDDHALVRDGMRMHLTLQPGLEVVGEADDGEAALAWLAAAEAGRMPDLVITDIGMR 175 Query: 57 GVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAA 116 G+ GI + L R ++IVS ++ Y + AGA G+V K + ++AAI+A Sbjct: 176 GMGGIALAGALHDRYPELAVLIVSMHDNLEYVRQAIRAGARGYVLKDAPADELLAAIQAV 235 Query: 117 KNGYCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 G ++ + R + + LD+L+ +E ++ I G+ N DIA ++ +S +TV Sbjct: 236 LAGRVFYSARIARGMAAQAV--SPLDALTPRERDILHGIGRGQANKDIAVQLGVSVRTVE 293 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRN 201 T++ L KL + +L +A + Sbjct: 294 THRLNLKRKLGIEGRAELVKYAVQQ 318 >UniRef50_D2QF32 Two component transcriptional regulator, LuxR family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QF32_9SPHI Length = 223 Score = 233 bits (597), Expect = 2e-60, Method: Composition-based stats. Identities = 53/220 (24%), Positives = 109/220 (49%), Gaps = 18/220 (8%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I DDH + IR LL DI+I+ E ++G A+ + ++ D++++D+ +P ++ Sbjct: 3 IRILIADDHSVVRKGIRMLLEDETDIQIVGEASDGDEAIDLLASIGTDVLLLDITMPRMS 62 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ L+ + K+ + ++ S ++ Y GA G++ K G+ ++ A+ +G Sbjct: 63 GIEALKVISKKYPAVRTLMFSMHSNPDYIVKAVQHGAAGYLLKDTGLEEMLRAVRTVVDG 122 Query: 120 YCYFPFSLNRFV--------GSLTSDQQKL---------DSLSKQEISVMRYILDGKDNN 162 Y+P + + + +LT + K + ++ +E V+ ++DG + Sbjct: 123 DLYYPPNASSVIIRSLVLPNANLTKEPAKAGGSVSKSIWNRITSREGQVLTCLIDGMSSP 182 Query: 163 DIAEKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNK 202 +IAEK IS TV+ ++ ++ K K+ DL A K Sbjct: 183 EIAEKFGISPNTVANQRASIIRKAGVKNTADLIRLALEEK 222 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_C0QFU8 TRAP-type C4-dicarboxylate transporter, periplas... 295 7e-79 UniRef50_Q2RJU9 Two component transcriptional regulator, LuxR fa... 291 1e-77 UniRef50_B7GL14 DNA-binding response regulator, NarL family (REC... 288 8e-77 UniRef50_D2BDI1 Response regulator receiver protein n=8 Tax=Acti... 283 2e-75 UniRef50_Q1J0X7 Two component transcriptional regulator, LuxR fa... 283 2e-75 UniRef50_A8MF72 Two component transcriptional regulator, LuxR fa... 281 1e-74 UniRef50_A0LVS2 Two component transcriptional regulator, LuxR fa... 278 5e-74 UniRef50_D1AAU8 Two component transcriptional regulator, LuxR fa... 278 6e-74 UniRef50_B4VFW8 Two-component system response regulator n=2 Tax=... 278 6e-74 UniRef50_B9L2G4 Transcriptional regulatory protein degU n=2 Tax=... 278 7e-74 UniRef50_A0RDP4 DNA-binding response regulator n=75 Tax=Bacillac... 278 8e-74 UniRef50_B9L0H3 Transcriptional regulatory protein degU n=1 Tax=... 278 8e-74 UniRef50_B8D0J2 Two component transcriptional regulator, LuxR fa... 277 2e-73 UniRef50_A0R9S0 DNA-binding response regulator n=37 Tax=Bacillus... 277 2e-73 UniRef50_C8WSR5 Two component transcriptional regulator, LuxR fa... 277 2e-73 UniRef50_A4J6C2 Two component transcriptional regulator, LuxR fa... 275 6e-73 UniRef50_C6BTX3 Two component transcriptional regulator, LuxR fa... 275 8e-73 UniRef50_C1F9F6 Two-component response regulator n=2 Tax=Bacteri... 274 2e-72 UniRef50_Q5HLK6 Oxygen regulatory protein nreC n=71 Tax=Firmicut... 273 2e-72 UniRef50_B2J2N1 Two component transcriptional regulator, LuxR fa... 272 4e-72 UniRef50_C7MUJ2 Response regulator containing a CheY-like receiv... 271 7e-72 UniRef50_Q67QY5 Two-component response regulator n=1 Tax=Symbiob... 271 9e-72 UniRef50_O07528 Uncharacterized transcriptional regulatory prote... 271 1e-71 UniRef50_A5F1Q5 Transcriptional regulator, LuxR family n=54 Tax=... 271 1e-71 UniRef50_Q2LSF1 Two-component response regulator n=4 Tax=Deltapr... 270 2e-71 UniRef50_B2A8K6 Two component transcriptional regulator, LuxR fa... 270 2e-71 UniRef50_C7RBI1 Two component transcriptional regulator, LuxR fa... 270 2e-71 UniRef50_O32197 Transcriptional regulatory protein liaR n=142 Ta... 270 2e-71 UniRef50_C7MN84 Response regulator containing a CheY-like receiv... 270 3e-71 UniRef50_P54662 Transcriptional regulatory protein degU n=24 Tax... 269 3e-71 UniRef50_Q01NJ8 Two component transcriptional regulator, LuxR fa... 269 4e-71 UniRef50_B0C955 Two-component transcriptional regulator, LuxR fa... 269 4e-71 UniRef50_C0QFI8 DNA-binding response regulator (LuxR-family prot... 269 4e-71 UniRef50_Q1LEP5 Two component transcriptional regulator, LuxR fa... 269 4e-71 UniRef50_Q01NC6 Two component transcriptional regulator, LuxR fa... 269 5e-71 UniRef50_Q8YV43 Two-component response regulator n=7 Tax=Bacteri... 268 5e-71 UniRef50_C1TQ52 Response regulator containing a CheY-like receiv... 268 6e-71 UniRef50_A6GFX0 Two component transcriptional regulator, LuxR fa... 268 6e-71 UniRef50_A4VZN8 Response regulator containing a CheY-like receiv... 268 9e-71 UniRef50_D1C1C8 Two component transcriptional regulator, LuxR fa... 268 1e-70 UniRef50_A9B5L0 Two component transcriptional regulator, LuxR fa... 268 1e-70 UniRef50_D2AX12 Response regulator receiver protein n=100 Tax=Ac... 267 1e-70 UniRef50_Q2RMH6 Two component transcriptional regulator, LuxR fa... 267 2e-70 UniRef50_A1HU08 Two component transcriptional regulator, LuxR fa... 267 2e-70 UniRef50_C7QHJ1 Two component transcriptional regulator, LuxR fa... 267 2e-70 UniRef50_Q1AVR6 Two component transcriptional regulator, LuxR fa... 266 2e-70 UniRef50_A0K2I9 Two component transcriptional regulator, LuxR fa... 266 2e-70 UniRef50_D1XHI5 Two component transcriptional regulator, LuxR fa... 266 2e-70 UniRef50_P55184 Uncharacterized transcriptional regulatory prote... 266 3e-70 UniRef50_B2J8J5 Two component transcriptional regulator, LuxR fa... 266 3e-70 UniRef50_Q1IXN1 Two component transcriptional regulator, LuxR fa... 266 3e-70 UniRef50_A3Y699 Putative two component system response regulator... 266 4e-70 UniRef50_A5V148 Two component transcriptional regulator, LuxR fa... 266 4e-70 UniRef50_B8FDP3 Two component transcriptional regulator, LuxR fa... 265 5e-70 UniRef50_C6D0G6 Two component transcriptional regulator, LuxR fa... 265 5e-70 UniRef50_B8FFJ9 Two component transcriptional regulator, LuxR fa... 265 7e-70 UniRef50_D1C9Z8 Two component transcriptional regulator, LuxR fa... 265 7e-70 UniRef50_B5JFN7 Response regulator receiver domain protein n=1 T... 265 7e-70 UniRef50_B9XC41 Two component transcriptional regulator, LuxR fa... 265 9e-70 UniRef50_Q3Z7M1 DNA-binding response regulator, LuxR family n=7 ... 265 1e-69 UniRef50_D1CF52 Two component transcriptional regulator, LuxR fa... 264 1e-69 UniRef50_C6E2Z1 Two component transcriptional regulator, LuxR fa... 264 1e-69 UniRef50_B9XL75 Two component transcriptional regulator, LuxR fa... 264 1e-69 UniRef50_B1ZY58 Two component transcriptional regulator, LuxR fa... 264 1e-69 UniRef50_B1Y743 Two component transcriptional regulator, LuxR fa... 264 1e-69 UniRef50_UPI0001B502C9 two component LuxR family transcriptional... 264 1e-69 UniRef50_D1AEE5 Two component transcriptional regulator, LuxR fa... 264 2e-69 UniRef50_B0C756 Two-component transcriptional regulator, LuxR fa... 263 2e-69 UniRef50_Q1GIA7 Two component transcriptional regulator, LuxR fa... 263 2e-69 UniRef50_B4CWX5 Two component transcriptional regulator, LuxR fa... 263 2e-69 UniRef50_D1C6S1 Two component transcriptional regulator, LuxR fa... 263 2e-69 UniRef50_B8GAC9 Two component transcriptional regulator, LuxR fa... 263 3e-69 UniRef50_A9AX03 Two component transcriptional regulator, LuxR fa... 263 3e-69 UniRef50_D1VBH1 Two component transcriptional regulator, LuxR fa... 263 4e-69 UniRef50_Q485W6 DNA-binding response regulator n=3 Tax=Alteromon... 262 4e-69 UniRef50_C9LUT0 DNA-binding response regulator UhpA n=1 Tax=Sele... 262 5e-69 UniRef50_A7NP18 Two component transcriptional regulator, LuxR fa... 262 5e-69 UniRef50_Q9RU37 DNA-binding response regulator n=3 Tax=Deinococc... 262 5e-69 UniRef50_D0LYS4 Two component transcriptional regulator, LuxR fa... 262 6e-69 UniRef50_Q09C30 Two-component system regulatory protein n=3 Tax=... 262 6e-69 UniRef50_A8VTE0 Response regulator receiver protein n=1 Tax=Baci... 261 7e-69 UniRef50_C6J7D2 Response regulator n=1 Tax=Paenibacillus sp. ora... 261 7e-69 UniRef50_A4XCA4 Response regulator receiver n=3 Tax=Actinomyceta... 261 8e-69 UniRef50_C3BET8 Putative uncharacterized protein n=15 Tax=Bacill... 261 8e-69 UniRef50_Q51373 Response regulator gacA n=50 Tax=Gammaproteobact... 261 1e-68 UniRef50_B8G137 Two component transcriptional regulator, LuxR fa... 261 1e-68 UniRef50_Q15T22 Two component transcriptional regulator, LuxR fa... 261 1e-68 UniRef50_A5G586 Two component transcriptional regulator, LuxR fa... 261 1e-68 UniRef50_B1ZVM0 Two component transcriptional regulator, LuxR fa... 261 1e-68 UniRef50_P0C0Z1 Response regulator protein vraR n=123 Tax=Firmic... 260 2e-68 UniRef50_A9WA66 Response regulator receiver n=2 Tax=Chloroflexus... 260 2e-68 UniRef50_C1A9U5 NarL family two-component response regulator n=1... 260 2e-68 UniRef50_A9AZR3 Two component transcriptional regulator, LuxR fa... 260 2e-68 UniRef50_A1SGL7 Response regulator receiver n=1 Tax=Nocardioides... 260 2e-68 UniRef50_C0WKL5 Response regulator n=6 Tax=Corynebacterium RepID... 260 2e-68 UniRef50_Q313W8 Two component transcriptional regulator, LuxR fa... 260 3e-68 UniRef50_Q3Z8L1 DNA-binding response regulator, LuxR family n=6 ... 259 4e-68 UniRef50_B9QSJ5 Response regulator receiver domain protein n=1 T... 259 4e-68 UniRef50_B1KE04 Two component transcriptional regulator, LuxR fa... 259 4e-68 UniRef50_Q11VH7 Response regulator n=1 Tax=Cytophaga hutchinsoni... 259 5e-68 UniRef50_D1CI66 Two component transcriptional regulator, LuxR fa... 258 6e-68 UniRef50_B8CZJ8 Two component transcriptional regulator, LuxR fa... 258 6e-68 UniRef50_Q1H354 Two component transcriptional regulator, LuxR fa... 258 6e-68 UniRef50_B0MVU6 Putative uncharacterized protein n=1 Tax=Alistip... 258 6e-68 UniRef50_C7MLQ9 Response regulator containing a CheY-like receiv... 258 7e-68 UniRef50_C4V5Y3 Response regulator n=3 Tax=Selenomonas RepID=C4V... 258 8e-68 UniRef50_C5RGJ7 Two component transcriptional regulator, LuxR fa... 258 8e-68 UniRef50_A1WBJ7 Two component transcriptional regulator, LuxR fa... 258 8e-68 UniRef50_Q04VJ6 Receiver component of a two-component response r... 258 9e-68 UniRef50_A8L9Z7 Two component transcriptional regulator, LuxR fa... 258 1e-67 UniRef50_B9L1R6 Response regulator uvrY n=1 Tax=Thermomicrobium ... 258 1e-67 UniRef50_C0GJ72 Two component transcriptional regulator, LuxR fa... 258 1e-67 UniRef50_C6XAP6 Two component transcriptional regulator, LuxR fa... 258 1e-67 UniRef50_C4L5Q6 Two component transcriptional regulator, LuxR fa... 258 1e-67 UniRef50_Q1AST2 Two component transcriptional regulator, LuxR fa... 258 1e-67 UniRef50_Q1GZT3 Two component transcriptional regulator, LuxR fa... 257 1e-67 UniRef50_C4ZEG3 Two-component response regulator (Extracellular ... 257 1e-67 UniRef50_A3CKH3 Two-component system transcriptional regulator (... 257 2e-67 UniRef50_C5VAN3 Two component transcriptional regulator, LuxR fa... 257 2e-67 UniRef50_A5D0L7 Response regulator n=1 Tax=Pelotomaculum thermop... 257 2e-67 UniRef50_D1Y661 DNA-binding response regulator, LuxR family n=1 ... 257 2e-67 UniRef50_C4ZNU7 Two component transcriptional regulator, LuxR fa... 257 2e-67 UniRef50_C7Q6M6 Two component transcriptional regulator, LuxR fa... 256 2e-67 UniRef50_B8FX94 Two component transcriptional regulator, LuxR fa... 256 2e-67 UniRef50_C5C7H0 Response regulator containing a CheY-like receiv... 256 2e-67 UniRef50_Q1ASU8 Two component transcriptional regulator, LuxR fa... 256 2e-67 UniRef50_A7NIZ3 Two component transcriptional regulator, LuxR fa... 256 3e-67 UniRef50_Q2W7M4 Response regulator n=3 Tax=Magnetospirillum RepI... 256 3e-67 UniRef50_C0N6H7 Response regulator receiver domain protein n=1 T... 256 3e-67 UniRef50_D1BX47 Two component transcriptional regulator, LuxR fa... 256 3e-67 UniRef50_Q024Y7 Two component transcriptional regulator, LuxR fa... 256 3e-67 UniRef50_UPI00018507A5 two component LuxR family transcriptional... 256 3e-67 UniRef50_Q67MG8 Two-component response regulator n=1 Tax=Symbiob... 256 5e-67 UniRef50_C4DCK3 Response regulator containing a CheY-like receiv... 256 5e-67 UniRef50_A0L9F1 Two component transcriptional regulator, LuxR fa... 255 5e-67 UniRef50_A1SKW0 Two component transcriptional regulator, LuxR fa... 255 6e-67 UniRef50_A1ASJ5 Two component transcriptional regulator, LuxR fa... 255 6e-67 UniRef50_C7MRK0 Response regulator containing a CheY-like receiv... 255 6e-67 UniRef50_Q5ZS73 Response regulator GacA n=10 Tax=Gammaproteobact... 255 6e-67 UniRef50_D2BGT0 DNA-binding response regulator, LuxR family n=5 ... 255 7e-67 UniRef50_A9WKI8 Response regulator receiver n=3 Tax=Chloroflexac... 255 7e-67 UniRef50_B1M5J4 Two component transcriptional regulator, LuxR fa... 255 7e-67 UniRef50_UPI0001C314AF two component transcriptional regulator, ... 255 8e-67 UniRef50_C3JVF4 Two component transcriptional regulator, LuxR fa... 255 9e-67 UniRef50_C0DXM6 Putative uncharacterized protein n=1 Tax=Eikenel... 255 1e-66 UniRef50_Q9RPE7 Response regulator n=5 Tax=Corynebacterium RepID... 254 1e-66 UniRef50_C1RMQ2 Response regulator containing a CheY-like receiv... 254 1e-66 UniRef50_D1BCA8 Two component transcriptional regulator, LuxR fa... 254 2e-66 UniRef50_B5YIR2 Response regulator UvrY n=1 Tax=Thermodesulfovib... 253 2e-66 UniRef50_D1B9T1 Two component transcriptional regulator, LuxR fa... 253 2e-66 UniRef50_A4FAA4 Two component system response regulator n=2 Tax=... 253 2e-66 UniRef50_C6CZA5 Two component transcriptional regulator, LuxR fa... 253 2e-66 UniRef50_B2A6W2 Two component transcriptional regulator, LuxR fa... 253 2e-66 UniRef50_A1K960 Probable transcriptional regulator, LuxR family ... 253 3e-66 UniRef50_C2C4B6 Transcriptional regulator n=1 Tax=Listeria grayi... 253 3e-66 UniRef50_C8WS10 Two component transcriptional regulator, LuxR fa... 253 3e-66 UniRef50_Q5NY27 DNA-binding response regulator, LuxR family n=1 ... 253 3e-66 UniRef50_Q024A4 Two component transcriptional regulator, LuxR fa... 253 3e-66 UniRef50_A3TJD7 Two-component response regulator n=1 Tax=Janibac... 253 3e-66 UniRef50_B4D6Y1 Two component transcriptional regulator, LuxR fa... 253 3e-66 UniRef50_A7HA46 Two component transcriptional regulator, LuxR fa... 253 3e-66 UniRef50_C7R398 Two component transcriptional regulator, LuxR fa... 253 3e-66 UniRef50_A5URU4 Two component transcriptional regulator, LuxR fa... 253 3e-66 UniRef50_Q5WI37 Two-component response regulator n=5 Tax=Bacilla... 253 4e-66 UniRef50_C4DI56 Response regulator containing a CheY-like receiv... 252 4e-66 UniRef50_Q52376 Response regulator gacA n=286 Tax=Gammaproteobac... 252 5e-66 UniRef50_UPI0001789C57 two component transcriptional regulator, ... 252 5e-66 UniRef50_B4D808 Two component transcriptional regulator, LuxR fa... 251 8e-66 UniRef50_A1ZYF0 DNA-binding response regulator, LuxR family n=1 ... 251 9e-66 UniRef50_D1BGN7 Response regulator containing a CheY-like receiv... 251 9e-66 UniRef50_C7NKN7 Response regulator containing a CheY-like receiv... 251 1e-65 UniRef50_C7RMN3 Two component transcriptional regulator, LuxR fa... 251 1e-65 UniRef50_B9XAM6 Two component transcriptional regulator, LuxR fa... 251 1e-65 UniRef50_Q1QVM5 Two component transcriptional regulator, LuxR fa... 251 1e-65 UniRef50_UPI0001789139 two component transcriptional regulator, ... 250 2e-65 UniRef50_P94439 Uncharacterized transcriptional regulatory prote... 250 2e-65 UniRef50_B8CN77 Nitrate/nitrite DNA-binding response regulator, ... 250 2e-65 UniRef50_A6TVR4 Two component transcriptional regulator, LuxR fa... 250 2e-65 UniRef50_C1TL62 Response regulator containing a CheY-like receiv... 250 2e-65 UniRef50_B6A2W0 Two component transcriptional regulator, LuxR fa... 250 2e-65 UniRef50_D2SFS4 Two component transcriptional regulator, LuxR fa... 250 2e-65 UniRef50_Q13QW9 Two component transcriptional regulator, LuxR fa... 250 3e-65 UniRef50_B9E7V9 Two-component response regulator n=65 Tax=Staphy... 250 3e-65 UniRef50_C6E3E1 Two component transcriptional regulator, LuxR fa... 250 3e-65 UniRef50_A5WFD3 Two component transcriptional regulator, LuxR fa... 250 3e-65 UniRef50_B1Y1Z3 Two component transcriptional regulator, LuxR fa... 250 3e-65 UniRef50_A1WT06 Two component transcriptional regulator, LuxR fa... 250 3e-65 UniRef50_B8GSX5 Response regulator receiver protein n=2 Tax=Ecto... 249 4e-65 UniRef50_B8GUD1 Two component transcriptional regulator, LuxR fa... 249 4e-65 UniRef50_B4D2I0 Two component transcriptional regulator, LuxR fa... 249 4e-65 UniRef50_Q46VQ7 Regulatory protein, LuxR:Response regulator rece... 249 4e-65 UniRef50_C1B8T3 NarL family two-component response regulator n=6... 249 4e-65 UniRef50_C5T9P3 Two component transcriptional regulator, LuxR fa... 249 4e-65 UniRef50_C7QC31 Two component transcriptional regulator, LuxR fa... 249 4e-65 UniRef50_B4D831 Two component transcriptional regulator, LuxR fa... 248 6e-65 UniRef50_Q027R2 Two component transcriptional regulator, LuxR fa... 248 6e-65 UniRef50_D2AUN6 Response regulator receiver protein n=38 Tax=Act... 248 6e-65 UniRef50_A1VT42 Two component transcriptional regulator, LuxR fa... 248 6e-65 UniRef50_Q60AR8 DNA binding response regulator, LuxR family n=1 ... 248 7e-65 UniRef50_A0M4P6 Two-component system response regulator n=5 Tax=... 248 7e-65 UniRef50_D2PZN7 Two component transcriptional regulator, LuxR fa... 248 7e-65 UniRef50_Q3JFS6 DNA-binding response regulator, LuxR family n=92... 248 7e-65 UniRef50_C6WIC9 Two component transcriptional regulator, LuxR fa... 248 7e-65 UniRef50_Q98DH9 Two-component system response regulator n=1 Tax=... 248 8e-65 UniRef50_B3DW63 DNA-binding response regulator, NarL family (REC... 248 8e-65 UniRef50_B9XAQ5 Two component transcriptional regulator, LuxR fa... 248 8e-65 UniRef50_Q0B0G6 Response regulator receiver protein n=1 Tax=Synt... 248 1e-64 UniRef50_Q1LE49 Two component transcriptional regulator, LuxR fa... 248 1e-64 UniRef50_A0NNP3 Response regulator containing a CheY-like receiv... 248 1e-64 UniRef50_C6WV69 Two component transcriptional regulator, LuxR fa... 248 1e-64 UniRef50_B0C7V6 Two-component response regulator n=1 Tax=Acaryoc... 248 1e-64 UniRef50_C9M8B3 DNA-binding response regulator, LuxR family n=1 ... 247 1e-64 UniRef50_D2Q2Q8 Two component transcriptional regulator, LuxR fa... 247 1e-64 UniRef50_C4V1Z2 Transcriptional regulator n=1 Tax=Selenomonas fl... 247 1e-64 UniRef50_C1A730 NarL family two-component response regulator n=1... 247 1e-64 UniRef50_C0Z4M7 Two-component response regulator n=7 Tax=Bacilla... 247 1e-64 UniRef50_C9QDP7 DNA-binding response regulator LuxR family n=2 T... 247 2e-64 UniRef50_B1ZU87 Two component transcriptional regulator, LuxR fa... 247 2e-64 UniRef50_C0Q9H4 Two component transcriptional regulator (LuxR fa... 247 2e-64 UniRef50_Q11YW8 Two component transcriptional regulator, LuxR fa... 247 2e-64 UniRef50_UPI00016C48EF two-component response regulator n=1 Tax=... 247 2e-64 UniRef50_C1TL94 Response regulator containing a CheY-like receiv... 247 2e-64 UniRef50_D1BXU0 Two component transcriptional regulator, LuxR fa... 247 2e-64 UniRef50_B2JSN3 Two component transcriptional regulator, LuxR fa... 247 2e-64 UniRef50_A6M052 Two component transcriptional regulator, LuxR fa... 246 3e-64 UniRef50_D2B5Y0 Response regulator receiver protein n=14 Tax=Act... 246 3e-64 UniRef50_C0Z7M8 Two-component hybrid sensor and regulator n=11 T... 246 3e-64 UniRef50_C0INV4 Two component transcriptional regulator n=1 Tax=... 246 3e-64 UniRef50_Q2BNZ3 Transcriptional regulator, LuxR family protein n... 246 3e-64 UniRef50_B4SLZ0 Two component transcriptional regulator, LuxR fa... 246 3e-64 UniRef50_C2RNB5 Two-component protein Kinase n=1 Tax=Bacillus ce... 246 3e-64 UniRef50_D2PZY5 Two component transcriptional regulator, LuxR fa... 246 4e-64 UniRef50_UPI000050F8A6 two component transcriptional regulator, ... 246 4e-64 UniRef50_A8L3K7 Two component transcriptional regulator, LuxR fa... 246 4e-64 UniRef50_D0LE76 Response regulator receiver n=2 Tax=Actinomyceta... 246 4e-64 UniRef50_B2KBW2 Two component transcriptional regulator, LuxR fa... 246 4e-64 UniRef50_C0N7Q7 Sigma-70, region 4 family n=1 Tax=Methylophaga t... 246 4e-64 UniRef50_Q2BNR9 DNA-binding response regulator, LuxR family prot... 245 5e-64 UniRef50_C3AL44 Response regulator receiver n=3 Tax=Bacillus Rep... 245 5e-64 UniRef50_Q7NMF3 Two-component response regulator n=1 Tax=Gloeoba... 245 5e-64 UniRef50_C5B7B5 Nitrate/nitrite response regulator protein NarP ... 245 6e-64 UniRef50_C0ZDE8 Two-component response regulator n=7 Tax=Bacilla... 245 6e-64 UniRef50_A9U6E4 Predicted protein (Fragment) n=1 Tax=Physcomitre... 245 6e-64 UniRef50_A8ZMB6 Two-component transcriptional regulator, LuxR fa... 245 6e-64 UniRef50_B9MPQ9 Two component transcriptional regulator, LuxR fa... 245 7e-64 UniRef50_C0ZBD9 Two-component response regulator n=2 Tax=Paeniba... 245 7e-64 UniRef50_UPI0001746AEC response regulator with a HTH DNA-binding... 245 8e-64 UniRef50_B1WQK4 Two-component response regulator n=19 Tax=Cyanob... 245 9e-64 UniRef50_A8L345 Two component transcriptional regulator, LuxR fa... 245 1e-63 Sequences not found previously or not previously below threshold: UniRef50_A9VLR5 Two component transcriptional regulator, LuxR fa... 246 4e-64 >UniRef50_C0QFU8 TRAP-type C4-dicarboxylate transporter, periplasmic solute-binding protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QFU8_DESAH Length = 219 Score = 295 bits (757), Expect = 7e-79, Method: Composition-based stats. Identities = 62/212 (29%), Positives = 114/212 (53%), Gaps = 9/212 (4%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ +DH + + +LL + DIE++ E G A++ VE L PD+V++D+ +P +N Sbjct: 4 IKVLVAEDHTIVRKGLCSLLYSEPDIEVVGEAENGREAIKMVEELAPDVVLMDISMPELN 63 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ L+K+ I+I+S + Y AGA+G++ K+ ++I AI AA G Sbjct: 64 GMDATRQLKKKYPDVKILILSMHSTEEYIFETLRAGASGYLIKRSAPTDLIKAIHAAHAG 123 Query: 120 YCYFPFSLNRFVGS--------LTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFIS 171 C+ S+++ V L+ + + LD LS +E V++ I +G N +IA ++IS Sbjct: 124 DCFLSPSISKKVIKNYVQQKQGLSLEPRGLDLLSAREREVLQLIAEGHANREIAGHLYIS 183 Query: 172 NKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 KTV +++ + +KL +L +A R + Sbjct: 184 PKTVEAHRNHIQKKLGLNGTAELTKYAIRKGL 215 >UniRef50_Q2RJU9 Two component transcriptional regulator, LuxR family n=3 Tax=Clostridia RepID=Q2RJU9_MOOTA Length = 222 Score = 291 bits (746), Expect = 1e-77, Method: Composition-based stats. Identities = 47/210 (22%), Positives = 99/210 (47%), Gaps = 7/210 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I DDH L IR +L + D++++ E G A++ +P ++I+D+++PG+N Sbjct: 7 ITILIADDHSLVREGIRKILELEPDLQVVGEAATGQEAIEMTRRYQPQVIIMDINMPGLN 66 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ + +R+ I+ ++ +D Y +G +G+V K ++ A+ G Sbjct: 67 GIEATKVIRQEWPQIAILALTIHDDEEYIIELLRSGVSGYVLKDISAEELVQAVYQVARG 126 Query: 120 YCYFPFSLNRFVGSLTSDQQKLD------SLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 + + V Q+ L+ +E ++ ++ GK N +IA ++FIS K Sbjct: 127 ARVIHPGVAQKVIGCIQKQKPFTPAPVSIPLTAREREILIHVSLGKSNREIARELFISEK 186 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TV + + + K+ +A ++ + Sbjct: 187 TVKNHLTHIFHKIGVSDRTQAALYALKHGL 216 >UniRef50_B7GL14 DNA-binding response regulator, NarL family (REC-HTH domains) n=30 Tax=Bacillales RepID=B7GL14_ANOFW Length = 260 Score = 288 bits (739), Expect = 8e-77, Method: Composition-based stats. Identities = 59/218 (27%), Positives = 103/218 (47%), Gaps = 17/218 (7%) Query: 2 NAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 ++IDDH L I+ +L + D E++AE ++G A+ VE KPD+VI+D+++P VNG Sbjct: 38 RIVLIDDHKLFREGIKRILDFEQDFEVVAEGSDGDEALALVERYKPDVVIMDINMPHVNG 97 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 ++ L + +II+S +D Y H GA G++ K+ + +I A+ G Sbjct: 98 VEATRQLIEAYPDTKVIILSIHDDESYVMHALQTGAMGYLLKEMDADALIEAVRVVAEGG 157 Query: 121 CYFPFSLNRFVGSLTSD----------------QQKLDSLSKQEISVMRYILDGKDNNDI 164 Y + + + L+++E V++ + DGK N I Sbjct: 158 SYLHPKVTHNLVKEYRRLVAGEGGGKEKQNQDVCRPYHLLTRRECEVLQLLADGKSNKGI 217 Query: 165 AEKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNK 202 A+ ++IS KTV + S +++KL A +N Sbjct: 218 ADALYISEKTVKNHVSNILQKLNVNDRTQAVVVAIKNG 255 >UniRef50_D2BDI1 Response regulator receiver protein n=8 Tax=Actinomycetales RepID=D2BDI1_STRRD Length = 227 Score = 283 bits (726), Expect = 2e-75, Method: Composition-based stats. Identities = 57/208 (27%), Positives = 104/208 (50%), Gaps = 4/208 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDHPL +R LL + E++ E +G A+ V +L PD+V++D+ +PGV Sbjct: 19 IRVLLVDDHPLLRHGLRALLEQVGGAEVVGEAGDGEEAIALVLSLNPDVVVMDLVMPGVT 78 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ TL R+ +++++ D AGA G+V K N+ IAA+ A G Sbjct: 79 GIEATRTLIDRRPDLGVLVLTMSEDDASVFAALRAGARGYVLKGADGNDFIAAVRAVARG 138 Query: 120 YCYFPFSLNRFVGSLT---SDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 + ++ R + + L+++E ++ + GK N +IA ++F+S KTV Sbjct: 139 EAVYGPAVARRIRRFLTTGPESGPFPELTQREREILDLLASGKSNAEIARRLFLSQKTVK 198 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKIG 204 + + + KL+ A+R +G Sbjct: 199 NHLTSIFAKLQVADRTQAVVRARRAGLG 226 >UniRef50_Q1J0X7 Two component transcriptional regulator, LuxR family n=5 Tax=Bacteria RepID=Q1J0X7_DEIGD Length = 228 Score = 283 bits (726), Expect = 2e-75, Method: Composition-based stats. Identities = 52/207 (25%), Positives = 102/207 (49%), Gaps = 5/207 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDHP+ R LL + D+ ++ E G A+ + L PD++++DV +PG+N Sbjct: 15 ITLLLVDDHPVVRKGTRELLEGEADLRVVGEAESGEEAILKARQLMPDVILMDVSMPGMN 74 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ ++ + I+++++ +D Y +AGA G++ K + ++ A+ A G Sbjct: 75 GIEATRAIKAERPGVGILVLTSYDDDAYVFALLEAGAAGYLLKNASEDELLGAVRAVAAG 134 Query: 120 YCYFPFSLNRFVGSLTS----DQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 ++ R V S D+LS +E+ V+R G+ N +IA + IS +TV Sbjct: 135 ESALHPAVARKVLERFSTHQTPTPPEDALSPRELEVLRVAATGRTNKEIARDLDISPRTV 194 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNK 202 + + + KL S + + + Sbjct: 195 QVHLANIFSKLGVGSRTEAVLYGIKRG 221 >UniRef50_A8MF72 Two component transcriptional regulator, LuxR family n=14 Tax=Clostridia RepID=A8MF72_ALKOO Length = 224 Score = 281 bits (720), Expect = 1e-74, Method: Composition-based stats. Identities = 56/211 (26%), Positives = 104/211 (49%), Gaps = 8/211 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 +N +I DDH L ++ ++ + DI+++ +G AV + + L PD+V++D+ +P N Sbjct: 11 INVLIADDHALVRQGLKQIIELEPDIKVIGLAADGEEAVLKTQQLSPDVVLLDISMPKQN 70 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GIQ L L+ + II+++ D Y + GANG+V K ++I AI G Sbjct: 71 GIQTLRRLKDMDSTIKIIMLTFHEDREYLFETINLGANGYVLKDAESESLIKAIRDVYQG 130 Query: 120 YCYFPFSLNRFVGSLTSD-------QQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 Y +L + + + D L+++E V+ + +G +N +I + +FIS Sbjct: 131 LNYIYPTLATELVKEFNRREVKSQKRNNEDELTRREYEVLTLLAEGINNKEIGDCLFISE 190 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 KTV + S + +K+ +A ++ I Sbjct: 191 KTVKNHVSNIFKKINVNDRTQAAIYAYKHNI 221 >UniRef50_A0LVS2 Two component transcriptional regulator, LuxR family n=35 Tax=Actinomycetales RepID=A0LVS2_ACIC1 Length = 303 Score = 278 bits (714), Expect = 5e-74, Method: Composition-based stats. Identities = 58/213 (27%), Positives = 108/213 (50%), Gaps = 10/213 (4%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH L + +L + DI+++AE ++G AV R PD+V++DV +P Sbjct: 87 IKVLVADDHALFRRGLEMVLRQEPDIQLVAEASDGAEAVARAAETLPDVVLLDVRMPKRT 146 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ +++ S II+++ ++ AGA G++ K+ ++ + AAI A G Sbjct: 147 GIEACAAIKEVCPSAKIIMLTISDEEADLYEAIKAGAMGYLLKEISIDEVAAAIRAVHGG 206 Query: 120 YCYFPFSLNRFVGSLT---------SDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFI 170 S+ + + Q L+++E+ V+R + G +N DIA+++FI Sbjct: 207 QSLISPSMASKLLNEFASLIKRGDARHQVPAPKLTEREMEVLRLVAKGLNNRDIAKQLFI 266 Query: 171 SNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 S TV + ++EKL+ S M+ +A R K+ Sbjct: 267 SENTVKNHVRNILEKLQLHSRMEAVVYAVREKL 299 >UniRef50_D1AAU8 Two component transcriptional regulator, LuxR family n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1AAU8_THECD Length = 220 Score = 278 bits (714), Expect = 6e-74, Method: Composition-based stats. Identities = 58/209 (27%), Positives = 101/209 (48%), Gaps = 5/209 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 + +I DDHP+ +R LL +E++ E G AVQ L+PD+V++D+ +PG NG Sbjct: 10 IRVLITDDHPVFRQGLRGLLEALGVEVVGEAESGPQAVQLAAELQPDVVVMDLHMPGGNG 69 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 I+ T+ + +++++ D AGA G++ K+ G I A+ A G Sbjct: 70 IEATRTITRTSPRIGVLVLTMFRDDDSVFAAMRAGARGYLLKESGAEEIARAVRAVAAGE 129 Query: 121 CYFPFSLNRFVGSLTSD-----QQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 + + R V + +D Q L+++E V++ I G+ N +IA+ +F+S KTV Sbjct: 130 AIYGPEIARRVLTYFADMPDPKQTAFPELTEREREVLQLIAQGRSNGEIAQTLFLSPKTV 189 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKIG 204 + S + KL A+ +G Sbjct: 190 RNHVSNIFMKLHVADRAQAIVLAREAGLG 218 >UniRef50_B4VFW8 Two-component system response regulator n=2 Tax=Bacteria RepID=B4VFW8_9ACTO Length = 216 Score = 278 bits (714), Expect = 6e-74, Method: Composition-based stats. Identities = 55/208 (26%), Positives = 104/208 (50%), Gaps = 4/208 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH + +R L + DIE++ E ++G + R E L+PD++++D+ +PG + Sbjct: 8 VRVLLVDDHQVVRRGLRTFLEVQEDIEVVGEASDGEEGIARAEELRPDVILMDIKMPGTD 67 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ L LR+ ++IV++ + AGA G+V K + + AI + G Sbjct: 68 GIEALRRLRELANPARVLIVTSFTEQRTVVPALRAGAAGYVYKDIDPDALAGAIRSVHAG 127 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDS---LSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 + + + + L+ +E V+ +I DG+ N +IA + +S KTV Sbjct: 128 HVLLQPEVAVALLTQDDQGPSSSRGGALTDREREVLSHIADGRSNREIARALVLSEKTVK 187 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKIG 204 T+ S ++ KL+ +A R+ IG Sbjct: 188 THVSNILMKLDVADRTQAALWAVRHGIG 215 >UniRef50_B9L2G4 Transcriptional regulatory protein degU n=2 Tax=Thermomicrobia (class) RepID=B9L2G4_THERP Length = 246 Score = 278 bits (713), Expect = 7e-74, Method: Composition-based stats. Identities = 51/209 (24%), Positives = 101/209 (48%), Gaps = 6/209 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I+DDH L +R L+ IE++ E G A++ V L+PD+V++D+++PG++ Sbjct: 28 IRVLIVDDHDLFREGLRQLIETDPAIEVVGEAANGQDALKMVAELQPDVVLMDINMPGMD 87 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ E + ++ +++++ +D Y H AGA ++ K ++ AI A G Sbjct: 88 GIRATEAIVQQYRHVHVLMLTMYDDEEYVLHAIRAGARSYLVKNSKPEELLRAIHVAAEG 147 Query: 120 YCYFPFSLNRFVGSL-----TSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 L + T + LS +E++++R + G +N IA+ + ++ T Sbjct: 148 GATIDPDLAPILMREYQRLLTKAPTRGQDLSDRELTMLRLLAQGYNNRQIADALNLAEST 207 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 V S L +KL + +A + + Sbjct: 208 VKNNLSALFQKLGVRDRTQAVIYAISHGL 236 >UniRef50_A0RDP4 DNA-binding response regulator n=75 Tax=Bacillaceae RepID=A0RDP4_BACAH Length = 221 Score = 278 bits (713), Expect = 8e-74, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 107/205 (52%), Gaps = 3/205 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++++DH + + L + + EI+ E G A+ V T +PD+V++D+ +P ++ Sbjct: 15 IKLLLVEDHHIVRRGLVFFLKTREEFEIVGEAENGEDALTFVRTERPDVVLMDLSMPKMD 74 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ + +++ + I+I+S+ ++ Y +AGA+G+ K+ ++A+I A G Sbjct: 75 GIEATKQIKQYDETIKILILSSFSEQDYVLPALEAGADGYQLKEVQPEQLVASIIAIYEG 134 Query: 120 YCYFPFSLNRFVGSLTS--DQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 F + + ++ + L+K+E V++ I G+ N +IA ++ I+ +TV T Sbjct: 135 NANFHPKVTPALLGRSAVKKENPFSMLTKREQEVLQEIAKGRSNKEIAAELHITEQTVKT 194 Query: 178 YKSRLMEKLECKSLMDLYTFAQRNK 202 + S ++ KLE +A ++ Sbjct: 195 HVSNILAKLEVDDRTQAALYAVKHG 219 >UniRef50_B9L0H3 Transcriptional regulatory protein degU n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L0H3_THERP Length = 245 Score = 278 bits (713), Expect = 8e-74, Method: Composition-based stats. Identities = 54/217 (24%), Positives = 102/217 (47%), Gaps = 15/217 (6%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 +N +I+DDHPL + IR L + I+ E +G A++ + L PD++++D+ +PG+N Sbjct: 4 INILIVDDHPLFRSGIRWSLEQNPQFVIVGEAADGSEALRLADELSPDVILVDLSLPGMN 63 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++V L++RQ +II++ D + AGA+ + +K +I I G Sbjct: 64 GLEVARALKRRQPQAGVIILTMHQDDEQLFNAIRAGASAYCTKDIEPEQLIDVITRVARG 123 Query: 120 YCYFP------FSLNRFVGSLTSDQQKLDS--------LSKQEISVMRYILDGKDNNDIA 165 + V + +LD L+ +EI ++ + G N +IA Sbjct: 124 EYLINEMVLSRPFVASRVLDQFRELSRLDRTSSGFFSPLTPREIEILDCVARGYSNKEIA 183 Query: 166 EKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNK 202 + + IS++TV + + ++ KL +A R+ Sbjct: 184 QALNISDQTVKNHITSILRKLAVNDRTQAVIYALRHG 220 >UniRef50_B8D0J2 Two component transcriptional regulator, LuxR family n=1 Tax=Halothermothrix orenii H 168 RepID=B8D0J2_HALOH Length = 211 Score = 277 bits (710), Expect = 2e-73, Method: Composition-based stats. Identities = 51/203 (25%), Positives = 98/203 (48%), Gaps = 1/203 (0%) Query: 2 NAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 ++ DDH L I LL DI+++ E +G V+ V PD+V++D+++P + G Sbjct: 5 KVLVADDHDLVREGICKLLELYEDIKVVGEAGDGLETVKGVRDHFPDLVLLDLNMPRMGG 64 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 I ++ +++ ++I++ ++ Y +GA G++ K + AI+ G Sbjct: 65 ITAIKKIKEISPGIKVLILTIHDEEEYVYEVIRSGAEGYIQKDVKPEELKRAIDKVIKGD 124 Query: 121 CYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKS 180 FP S V + +++ ++ LS +E V+ + G N IA+++FIS KTV + S Sbjct: 125 KVFPRSTENEVREVVNEKYEVCELSSREQEVLELLAQGMSNKQIAQELFISEKTVKNHVS 184 Query: 181 RLMEKLECKSLMDLYTFAQRNKI 203 ++ KL A + + Sbjct: 185 NILRKLSVNDRTQAVIVALKRGL 207 >UniRef50_A0R9S0 DNA-binding response regulator n=37 Tax=Bacillus RepID=A0R9S0_BACAH Length = 216 Score = 277 bits (709), Expect = 2e-73, Method: Composition-based stats. Identities = 52/208 (25%), Positives = 113/208 (54%), Gaps = 5/208 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH AIR++L ++D+ ++ E + G +++VE +PD +++D+++PG N Sbjct: 5 IKILVVDDHAFLRDAIRSILEDESDMNVVGEASSGDGVLEKVEACRPDCILMDINLPGKN 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ E ++K + +++ + Y AGA+G++ K ++AAI G Sbjct: 65 GIEATELVKKNYPNCRVLVFTMYEHDEYLMDALQAGADGYLLKDSSSEQVVAAIRMLYRG 124 Query: 120 YCYFPFSLNRFVGSLTSDQQKLD----SLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 + + + + + K++ L+++E ++ ++ G N +IAE ++IS+KTV Sbjct: 125 DSVIHPRMTKKLITYHQQKMKVESNENELTEREKEILFELVKGLSNKEIAEALYISDKTV 184 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKI 203 + +++ +KL KS +A RN++ Sbjct: 185 KIHINKIFKKLNVKSRSQAVIYAVRNQL 212 >UniRef50_C8WSR5 Two component transcriptional regulator, LuxR family n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WSR5_ALIAD Length = 231 Score = 277 bits (709), Expect = 2e-73, Method: Composition-based stats. Identities = 48/213 (22%), Positives = 97/213 (45%), Gaps = 9/213 (4%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH L + +L I ++ E G A++ +TL+PD+ ++D+ +P N Sbjct: 10 IKVLVVDDHELFRRGVVTVLRSTPGIYVVGEAGNGREAIECFQTLQPDVTLLDIHMPVCN 69 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ +R+ + I++++ +GA+G+V K +I + G Sbjct: 70 GLETARKMREANPNTKILMLTVSETEEMLFEAVKSGASGYVLKSVSPERLIECVRQVYEG 129 Query: 120 YCYFPFSLNRFVGS--------LTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFIS 171 P SL + + + + L+++E V++Y+ G N +IA +FIS Sbjct: 130 EPVVPSSLAMKMIAEFSRTAETRMPSSESVTELTEREREVLQYLSAGASNKEIARALFIS 189 Query: 172 NKTVSTYKSRLMEKLECKSLMDLYTFAQRNKIG 204 TV + +++KL + +A RN I Sbjct: 190 ENTVRNHVRHILDKLHLSNRAQAAAYAVRNGIA 222 >UniRef50_A4J6C2 Two component transcriptional regulator, LuxR family n=2 Tax=Clostridia RepID=A4J6C2_DESRM Length = 218 Score = 275 bits (706), Expect = 6e-73, Method: Composition-based stats. Identities = 53/211 (25%), Positives = 101/211 (47%), Gaps = 8/211 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I DDH L +R +L + I ++ E+T G AV DIV++D+++P +N Sbjct: 5 IKLLIADDHILIREGLRKILSIEPHISVVGEVTNGQQAVDYCLKNPVDIVLMDINMPIMN 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ ++K + II ++ + Y G +G+V K + +I I G Sbjct: 65 GIEACRQIKKLNPNIGIIALTIHDQDEYLFELIKYGISGYVLKDIHPDQLIKTILGVAQG 124 Query: 120 YCYFPFSLNRFVGSLTS-------DQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 + P SL V + + ++K +L+++EI V++ + G+ N IA ++IS Sbjct: 125 ESFIPPSLTARVLAEFTRLSSGDYSEKKHLNLTEREIEVLKQVAKGQSNKAIANALYISE 184 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 KTV + + + +K+ +A + K+ Sbjct: 185 KTVKNHLTNIFQKIGVADRTQAALYAIKEKL 215 >UniRef50_C6BTX3 Two component transcriptional regulator, LuxR family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BTX3_DESAD Length = 217 Score = 275 bits (704), Expect = 8e-73, Method: Composition-based stats. Identities = 57/211 (27%), Positives = 104/211 (49%), Gaps = 7/211 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH + +R+ L +DI+++ E G AV+ L PDI+++D+ +P ++ Sbjct: 5 IKVLLVDDHDIVRIGVRSFLGSFDDIKVVGEAANGQEAVEMTAELSPDIILMDMLMPVMD 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GIQ + +R R+ G II +++ AGA G++ K + ++ AI G Sbjct: 65 GIQAIREIRDRKLPGRIIALTSFATDDKLFPAIKAGAMGYLLKDSTPDELLEAIRRVHRG 124 Query: 120 YCYFPFSLNRFVGSLTSDQ------QKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 + R V S S D L+ +E+ ++ + GK N IAE+MF+S Sbjct: 125 EPSLAPDIARKVLSELSQPGEDSETPTPDPLTPRELDTLKLVAKGKSNKAIAEEMFVSEA 184 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQRNKIG 204 TV T+ + ++ KL + ++ +A R I Sbjct: 185 TVRTHMTSILSKLHLANRVEATLYALREGIA 215 >UniRef50_C1F9F6 Two-component response regulator n=2 Tax=Bacteria RepID=C1F9F6_ACIC5 Length = 213 Score = 274 bits (702), Expect = 2e-72, Method: Composition-based stats. Identities = 50/204 (24%), Positives = 97/204 (47%), Gaps = 5/204 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH + + LL E++AE +G A+ +PDI I+D+ +P +N Sbjct: 10 IRILVVDDHHIVRQGLVALLNTLPGFEVIAEAGDGVEAIALHREHQPDITIMDLRLPRMN 69 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + +R+ I++++ + AGA G++ K +++ AAI + G Sbjct: 70 GVEAITRIREESPGARIVVLTTFDGDEDIYRALQAGARGYLLKGMDADDLTAAIRSVHAG 129 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 P + + S + L+ +E+ V+R I+ G+ N +IA + IS TV T+ Sbjct: 130 KSRIPTVVAERLAERMSGSE----LTARELDVLRLIVQGRSNREIAADLHISEATVKTHI 185 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 + L+ KL T A + + Sbjct: 186 NNLLSKLGVSDRTQAATTALQRGL 209 >UniRef50_Q5HLK6 Oxygen regulatory protein nreC n=71 Tax=Firmicutes RepID=NREC_STAEQ Length = 218 Score = 273 bits (701), Expect = 2e-72, Method: Composition-based stats. Identities = 61/215 (28%), Positives = 105/215 (48%), Gaps = 12/215 (5%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIP-GV 58 M +I DDH + +L + D+E++A +G A Q+V +PD++I+D+ +P G Sbjct: 1 MKIVIADDHAVVRTGFSMILNYQEDMEVVATAADGVEAYQKVLEHRPDVLILDLSMPPGE 60 Query: 59 NGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKN 118 +G+ + + I+I++ +D Y H +GA G++ K +I A+ Sbjct: 61 SGLIATSKISESFPDTKILILTMFDDEEYLFHVLKSGAKGYILKNSPDEQLILAVRTVYQ 120 Query: 119 GYCYFPFSLNRFVG----------SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKM 168 G Y L + ++S LSK+E+ ++ I G N DIAEK+ Sbjct: 121 GETYVDMKLTTSLVNEFVNQSQTDEVSSSSDPFKILSKRELEILPLIAKGYGNKDIAEKL 180 Query: 169 FISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 F+S KTV +K+ +M KL KS +L +A + K+ Sbjct: 181 FVSVKTVEAHKTHIMTKLNLKSKPELVEYALKKKL 215 >UniRef50_B2J2N1 Two component transcriptional regulator, LuxR family n=12 Tax=Cyanobacteria RepID=B2J2N1_NOSP7 Length = 232 Score = 272 bits (698), Expect = 4e-72, Method: Composition-based stats. Identities = 47/208 (22%), Positives = 100/208 (48%), Gaps = 10/208 (4%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I+DD L ++ +L + D+E++ + G A++ V L+PD+V++D+ +P ++ Sbjct: 9 IRLLIVDDQSLIRQGLKAMLEQEPDLEVVGDAENGKVALELVAELQPDVVLMDIRMPEMD 68 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G + + + + ++++S +D Y AGA G++ K + + AI +G Sbjct: 69 GRTATKLIMQSFPNIKVLVLSTFDDDSYLTGAMRAGAKGYLLKDMPSSELADAIRFGHSG 128 Query: 120 YCYFPF---------SLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFI 170 Y F + S K ++ +E V+ I G N +IA++++I Sbjct: 129 YTQFGPGLFDKLLVTEAASASANQNSASSKPSEITAREQEVLCLIGVGATNREIAQQLYI 188 Query: 171 SNKTVSTYKSRLMEKLECKSLMDLYTFA 198 + TV T+ + ++ +L K+ L +A Sbjct: 189 TEGTVKTHVTSILSRLNLKNRSQLAIYA 216 >UniRef50_C7MUJ2 Response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein n=101 Tax=Bacteria RepID=C7MUJ2_SACVD Length = 239 Score = 271 bits (696), Expect = 7e-72, Method: Composition-based stats. Identities = 52/214 (24%), Positives = 96/214 (44%), Gaps = 12/214 (5%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DD L A R +L +D IE++ E +G AV+ + D+V++DV +P ++ Sbjct: 21 LRVVLADDQDLVRAGFRVILSSDDGIEVVGEAGDGWEAVEVATRERADVVLMDVQMPKLD 80 Query: 60 GIQVLETLR----KRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEA 115 G++ L +II++ + Y AGA+GF+ K ++I ++ Sbjct: 81 GLEATRRLLGPAGADHP-TKVIILTTFDREDYLFEALRAGASGFLLKNASPEDLIESVRI 139 Query: 116 AKNGYCYFPFSLNRFVGSLTSDQ------QKLDSLSKQEISVMRYILDGKDNNDIAEKMF 169 G + R V + S ++ L+ +E V+ + G N +IA ++ Sbjct: 140 VARGDALLSPEVTRRVIARFSAPAVTGPTRRPSELTDREFEVLSLLAKGASNAEIARQLV 199 Query: 170 ISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 + TV T+ SR++ KL + FA N I Sbjct: 200 LGETTVKTHVSRILTKLNLRDRTHAVVFAYENGI 233 >UniRef50_Q67QY5 Two-component response regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67QY5_SYMTH Length = 218 Score = 271 bits (695), Expect = 9e-72, Method: Composition-based stats. Identities = 49/211 (23%), Positives = 103/211 (48%), Gaps = 7/211 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 M +I+DDH + + ++L D+E++ E + G A++ V LKPD+V++D+++P ++G Sbjct: 1 MKVLIVDDHLMLRKGVLSVLSNTDLEVIGEASNGQEALELVPKLKPDLVLMDINMPVLDG 60 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 ++ L++ ++I++ AGA+G++ K G +++++ AA +G Sbjct: 61 VEATRKLKQMYPDLKVVILTVSEIDKDLFEAIKAGADGYLLKNLGPEELVSSLRAAISGE 120 Query: 121 CYFPFSLNRFVGSLTSDQ-------QKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 + + Q LS +EI V+R G +IA K++++ Sbjct: 121 APISSVMAAKMLKEFRQPRANTTGKQPGQQLSPREIEVLRLASTGLTYKEIAAKLYVAES 180 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQRNKIG 204 TV + ++EKL ++ + +A R + Sbjct: 181 TVKNHMRHILEKLHLRNRSEAVGYAIRTGLA 211 >UniRef50_O07528 Uncharacterized transcriptional regulatory protein yhcZ n=3 Tax=Bacillus RepID=YHCZ_BACSU Length = 214 Score = 271 bits (695), Expect = 1e-71, Method: Composition-based stats. Identities = 55/209 (26%), Positives = 101/209 (48%), Gaps = 7/209 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 M +I DDH + +R ++DIE++ E G A++ +E KPD+V++D+ +P ++ Sbjct: 1 MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGLEALRVIEETKPDLVLMDLSMPEMD 60 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GIQ ++ ++ II++++ +D + AGA + K ++ G Sbjct: 61 GIQAIKKAIQQFPDTNIIVLTSYSDQEHVIPALQAGAKAYQLKDTEPEELVKT-RQVHGG 119 Query: 120 YCYFPFSLNRFVG-----SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 ++ V +++K L+++E V+ I +GK N +IA +FIS KT Sbjct: 120 EYKLSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTEIANGKSNKEIAAALFISEKT 179 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 V T+ S L+ KLE FA + + Sbjct: 180 VKTHVSNLLAKLEVADRTQAALFAVKYNL 208 >UniRef50_A5F1Q5 Transcriptional regulator, LuxR family n=54 Tax=Gammaproteobacteria RepID=A5F1Q5_VIBC3 Length = 216 Score = 271 bits (694), Expect = 1e-71, Method: Composition-based stats. Identities = 49/206 (23%), Positives = 107/206 (51%), Gaps = 3/206 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH + + L + +IE++A + G A++ V+ +PD+V++DV +P +N Sbjct: 9 IRVVMVDDHQVVLDGFIARLEQEPEIEVVATASNGLEALELVKLHQPDVVLMDVSMPIMN 68 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ +++ +++++ ++ Y AGA G++ K+ ++ AI+ G Sbjct: 69 GIEATRLIKEEVPHTKVLMLTMHDNREYIMQVMQAGAMGYMLKEISALKMVQAIKTVHQG 128 Query: 120 YCYFPFSLNRFV--GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 YF S + + K + LS++E +++R + G + IA + IS +TV T Sbjct: 129 ATYFCESTTSTLFSQEILPVANKPNPLSRREEAILRMVAQGCSSKKIATLLNISYRTVET 188 Query: 178 YKSRLMEKLECKSLMDLYTFAQRNKI 203 ++ + KL+ S +L +A ++ + Sbjct: 189 HRQNIKHKLDIHSTAELAQYALQHGL 214 >UniRef50_Q2LSF1 Two-component response regulator n=4 Tax=Deltaproteobacteria RepID=Q2LSF1_SYNAS Length = 217 Score = 270 bits (693), Expect = 2e-71, Method: Composition-based stats. Identities = 47/210 (22%), Positives = 96/210 (45%), Gaps = 7/210 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 +N ++ DDH + +R LL + + ++AE G + L P+I+I+D+ +P +N Sbjct: 3 VNVLLADDHKIVRDGLRTLLETHGSMNVVAEAENGQKTITLARELHPEIIIMDISMPDMN 62 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI + +I +S D + +AGA+G++ K ++ AI+ + Sbjct: 63 GIDATRKITSDLPGIKVIALSMHADRHFVIGMLEAGASGYLLKDCAFEELVNAIQTVLSN 122 Query: 120 YCYFPFSLNRFVGSLTSDQQK------LDSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 + Y ++ V + L+ +E +++ + +G IA + +S K Sbjct: 123 HTYLSPTIADIVVKNYVHKAAGTSVVVSSELTPRERELLQLLAEGLSAKQIAANLHVSVK 182 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TV T++ + +KL S+ +L +A R + Sbjct: 183 TVETHRRNITQKLGVGSVAELIKYAIREGL 212 >UniRef50_B2A8K6 Two component transcriptional regulator, LuxR family n=9 Tax=Clostridia RepID=B2A8K6_NATTJ Length = 228 Score = 270 bits (692), Expect = 2e-71, Method: Composition-based stats. Identities = 44/216 (20%), Positives = 99/216 (45%), Gaps = 13/216 (6%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH L ++ +L + D+ + E G V +V+ LKP+I+++D+++P +N Sbjct: 10 IRILLADDHALFRQGLKKILDMEEDLAVCGEAQNGEEVVDKVKLLKPNIILMDINMPLLN 69 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + +++ +I ++ D Y GA GF+ K ++ AI+ G Sbjct: 70 GVEATKYVKEVSPETKVIALTIHEDEEYLFEIVKEGAAGFLLKDVETPTLVQAIQEVNKG 129 Query: 120 YCYFPFSLNRFVGSLT------------SDQQKLDSLSKQEISVMRYILDGKDNNDIAEK 167 + ++ + SD+ L+ +E ++ + G N +I+++ Sbjct: 130 NSFIHPTITHKLLGEFNRLAQNSPRNIKSDEAVQSELTGREKEILELMAQGYTNKEISKE 189 Query: 168 MFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 ++IS KTV + S ++ K++ A + + Sbjct: 190 LYISEKTVKNHVSNILRKMDVTDRTQAVITALKCGV 225 >UniRef50_C7RBI1 Two component transcriptional regulator, LuxR family n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RBI1_KANKD Length = 212 Score = 270 bits (692), Expect = 2e-71, Method: Composition-based stats. Identities = 49/209 (23%), Positives = 105/209 (50%), Gaps = 6/209 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH + + +LL D ++AE + G AV++ +P + +ID+ +P +N Sbjct: 2 IRVMLADDHTILRQGLVSLLSKDADCTVVAEASNGLEAVEKALETRPQVAVIDISMPELN 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++V++ + + I++++ + Y H AGA+G++ K +I A++A G Sbjct: 62 GMEVVKRIHDKLPECKILVLTMHEEQEYVIHMVRAGASGYLLKDSASEELIDAVKALATG 121 Query: 120 YCYFPFSLNRFVGSLTSDQ-----QKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 Y+ + + S +L+++E V ++DGK DIA + IS KT Sbjct: 122 KTYYSQYAASVLATQYSQPDKEWQDPYKNLTQREREVFHLVVDGKTTKDIARTLDISVKT 181 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 ++ ++++KL + +L +A ++ + Sbjct: 182 AENHRGKVLDKLGVSNTAELVRYAAKHNL 210 >UniRef50_O32197 Transcriptional regulatory protein liaR n=142 Tax=Firmicutes RepID=LIAR_BACSU Length = 211 Score = 270 bits (692), Expect = 2e-71, Method: Composition-based stats. Identities = 54/208 (25%), Positives = 103/208 (49%), Gaps = 5/208 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++IDDH + + L + DIE++ E ++G V+ L PD++++D+ + G++ Sbjct: 2 IRVLLIDDHEMVRMGLAAFLEAQPDIEVIGEASDGSEGVRLAVELSPDVILMDLVMEGMD 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ + + + II++++ D +AGA ++ K I AI AA G Sbjct: 62 GIEATKQICRELSDPKIIVLTSFIDDDKVYPVIEAGALSYLLKTSKAAEIADAIRAASKG 121 Query: 120 YCYFPFSLNRFVGSLTSDQQ----KLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 + V S +SL+K+E+ ++ I +GK N +I E++FI+ KTV Sbjct: 122 EPKLESKVAGKVLSRLRHSGENALPHESLTKRELEILCLIAEGKTNKEIGEELFITIKTV 181 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKI 203 T+ + ++ KL+ +A RN + Sbjct: 182 KTHITNILSKLDVSDRTQAAVYAHRNHL 209 >UniRef50_C7MN84 Response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein n=2 Tax=Coriobacteriaceae RepID=C7MN84_CRYCD Length = 215 Score = 270 bits (691), Expect = 3e-71, Method: Composition-based stats. Identities = 51/211 (24%), Positives = 98/211 (46%), Gaps = 8/211 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIP-GV 58 ++ I DDH + ++ + D+ ++ E +G A V ++P ++++D+ +P G Sbjct: 2 IDVAIADDHAVVRQGFAFIINSQCDMRVVGEAADGKEAYDLVARVEPHVLLLDISMPPGE 61 Query: 59 NGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKN 118 NG+ E + S III++ + Y + GA G+V K ++ AI Sbjct: 62 NGLIACERISCDFPSTRIIILTMFEETDYLFYTLRGGAAGYVLKNSSTEVLLGAIRKVAT 121 Query: 119 GYCYFPFSLNRFVG------SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 G Y ++ + + S +++ LS +E + + G N + A+K+FIS Sbjct: 122 GETYIEPNMAQALSGKLHGQSGVAEKNPYHELSSREFEIFSLLAQGYTNKEAADKLFISV 181 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 KTV T++S++ KL S +L A + + Sbjct: 182 KTVETHRSKIYAKLGVNSRAELVHLALKYHL 212 >UniRef50_P54662 Transcriptional regulatory protein degU n=24 Tax=Bacillales RepID=DEGU_BREBE Length = 236 Score = 269 bits (690), Expect = 3e-71, Method: Composition-based stats. Identities = 52/222 (23%), Positives = 107/222 (48%), Gaps = 20/222 (9%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +IIDDH L ++ +L + + E++A+ +G +AV+ VE PD++++D+++P VN Sbjct: 10 IQIVIIDDHQLFREGVKRILAMEPEFEVVADGEDGENAVELVEKYNPDVILMDINMPKVN 69 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ L +R ++++S +D Y H GA+G++ K+ + +I A++ G Sbjct: 70 GVEATRDLIQRYPDVKVLVLSIHDDESYVTHVLKTGASGYLLKEMDADALIEAVKVVAQG 129 Query: 120 YCYFPFSLNRFVGSLTSD-------------------QQKLDSLSKQEISVMRYILDGKD 160 Y + + ++ L L+++E V++ + DG Sbjct: 130 GAYIHPKVTHNLIKEYRRLVNEDEQESSEIGFKEVEYRKPLHILTRRECEVLQLMTDGYS 189 Query: 161 NNDIAEKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNK 202 N I E ++IS KTV + S +++K+ + +N Sbjct: 190 NRMIGEALYISEKTVKNHVSNILQKMNVNDRTQAVVESIKNG 231 >UniRef50_Q01NJ8 Two component transcriptional regulator, LuxR family n=2 Tax=Acidobacteria RepID=Q01NJ8_SOLUE Length = 224 Score = 269 bits (690), Expect = 4e-71, Method: Composition-based stats. Identities = 57/211 (27%), Positives = 100/211 (47%), Gaps = 9/211 (4%) Query: 2 NAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 ++ DDH L +R LL + D+E+ E AV + L+PD+V++D+ + G++ Sbjct: 5 KILLTDDHTLFRQGVRTLLAAEADMEVAGEAANAMDAVALAQQLRPDVVLMDIGMAGMSS 64 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 + +RK + +I +S +D Y C D GANG++ K + +I AI + G Sbjct: 65 FEATRLIRKERPEVKVIFLSMYDDEDYLAECVDMGANGYILKDSPADQLITAIREVQRGG 124 Query: 121 CYFPFSLNRFVGSLTS--------DQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 Y L + + +L+K+E +++ + +GK +IA +S Sbjct: 125 SYLSPRLLSRLVDDFRLQGRGGGTRSPRFGTLTKREREILKMLAEGKSVKEIAAFFELSV 184 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 KTV +K LM KL+ + L +A + KI Sbjct: 185 KTVEAHKFNLMRKLDIHNKAQLVQYAIQKKI 215 >UniRef50_B0C955 Two-component transcriptional regulator, LuxR family n=4 Tax=Cyanobacteria RepID=B0C955_ACAM1 Length = 215 Score = 269 bits (690), Expect = 4e-71, Method: Composition-based stats. Identities = 47/208 (22%), Positives = 101/208 (48%), Gaps = 7/208 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DD L + +LL + D+ ++ + +G A+ +TL+PD++++DV +P + Sbjct: 2 IRLLLADDQALFRQGLASLLELEEDLSVVGQAQDGRDAILLTQTLQPDVILMDVRMPICD 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + +R I++++ ++ Y AGA G++ K + + AAI +G Sbjct: 62 GVEATREIHQRFPWIRILVLTTFDEDEYIWTSLQAGALGYLLKSTPASQLAAAIRMLHDG 121 Query: 120 YCYFPFSLNRFVGSLTSDQQK------LDSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 + ++ V + L+ LS +E+ V+ I GK N +I++ + ++ Sbjct: 122 HFQLGPTIAPKVIAQLRPPPLKNEQNHLERLSDRELDVLNLIGQGKSNREISQILHLTEG 181 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQRN 201 TV Y S+L+ L + +AQ+ Sbjct: 182 TVKNYVSQLLGSLGVRDRTQAALWAQQY 209 >UniRef50_C0QFI8 DNA-binding response regulator (LuxR-family protein) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QFI8_DESAH Length = 220 Score = 269 bits (689), Expect = 4e-71, Method: Composition-based stats. Identities = 57/208 (27%), Positives = 93/208 (44%), Gaps = 6/208 (2%) Query: 2 NAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGI 61 +I DDH + +R LL + +E+ G AV KPDIVI+D+ +P +NG Sbjct: 4 RILIADDHAIVREGLRVLLERKGLEVPWMAENGRQAVCLAVKFKPDIVIMDITMPNMNGS 63 Query: 62 QVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 121 E + + +I +S D Y +AGA +V K + AI+A G Sbjct: 64 IATEKIMQALPRTRVIALSMHADRRYIDRMFNAGAIAYVLKDSAFAELFDAIQAVGRGKY 123 Query: 122 YFPFSLNRFVGSLTSDQQ------KLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 Y S+ + + + +S +E V++ I +G IAE++F+S KTV Sbjct: 124 YISPSIAKTLADSCTSAPDTPQKCPFGRISPREREVLQLIAEGVKTRQIAERLFVSIKTV 183 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKI 203 ++ +M KL S+ L FA + + Sbjct: 184 EAHRRNIMNKLMISSVAGLTRFAIQEGL 211 >UniRef50_Q1LEP5 Two component transcriptional regulator, LuxR family n=3 Tax=Burkholderiaceae RepID=Q1LEP5_RALME Length = 214 Score = 269 bits (689), Expect = 4e-71, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 108/206 (52%), Gaps = 3/206 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + II DDH + +R++L + +D E++ E G Q V L P ++++D+ +PG N Sbjct: 2 IRVIIADDHTVVRNGLRHILERTSDFEVVGEAARGTEVPQLVRELSPHVILLDLSMPGRN 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++++ LR + I++++ + Y AGA G+++K+ ++ A+ G Sbjct: 62 GLELIRQLRTDHPALRILVLTMHAEEQYVVRAFRAGAAGYLTKESAATELVEALRKVAAG 121 Query: 120 YCYFPFSLNRFVGSLTSDQQ--KLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 Y ++ + ++ + LS +E+ V R I+DG+ IA + +S KTVST Sbjct: 122 GTYVSPAMAEKLALGLQEKPDAPHEGLSDRELEVFRRIVDGESLTQIAAALCVSAKTVST 181 Query: 178 YKSRLMEKLECKSLMDLYTFAQRNKI 203 YK RLMEKL+ +S L +A ++ Sbjct: 182 YKMRLMEKLQLRSDAALVRYAIEARL 207 >UniRef50_Q01NC6 Two component transcriptional regulator, LuxR family n=3 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01NC6_SOLUE Length = 216 Score = 269 bits (689), Expect = 5e-71, Method: Composition-based stats. Identities = 50/211 (23%), Positives = 104/211 (49%), Gaps = 8/211 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH + +R LL +++ + +G AV PD+V++DV +PG+N Sbjct: 4 IRILLADDHTVVRKGLRLLLESHPGFQVIGDAADGRDAVSLAGEHTPDVVVMDVAMPGLN 63 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ + + I+ +S +D Y AGA ++ K +++IAA+ A G Sbjct: 64 GIEAARQISAKLPHTAIVFLSMHSDESYVLKALKAGARAYLLKDSAEHDLIAAVIAVSEG 123 Query: 120 YCYFPFSLNRFV-------GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 +F ++++ + + + L+ +E V++ + +GK+N ++A + +S Sbjct: 124 KAFFSPAISKMLVEDYMRQMQERQIEDSYELLTTREREVLQLLAEGKNNKEVAAILNLSL 183 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TV T++ +++KL S +L +A R + Sbjct: 184 YTVETHRGNILQKLNLHSGAELILYAIRKGV 214 >UniRef50_Q8YV43 Two-component response regulator n=7 Tax=Bacteria RepID=Q8YV43_ANASP Length = 209 Score = 268 bits (688), Expect = 5e-71, Method: Composition-based stats. Identities = 45/204 (22%), Positives = 96/204 (47%), Gaps = 5/204 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I DDH + + ++ +++++A+ G + E +PD+ ++D+ +P V Sbjct: 7 IRVLIADDHAIFRQGLATIINRDPEMQVVAQAENGEQVIALFEEHQPDVTLMDLRMPEVE 66 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ + + S II+++ + AGA G++ K+ + ++ AI G Sbjct: 67 GVAAISAICATAKSARIIVLTTYDSDEDIYRGLQAGAKGYLLKETEPDELLNAIRTVHRG 126 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 + Y P + + S+ + LS++E+ V+R + G N DIA+ + I TV ++ Sbjct: 127 HKYIPPDVGAKLVQRLSNPE----LSERELEVLRSLAQGMSNADIADALSIGEGTVKSHV 182 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 +R++ KL+ A + I Sbjct: 183 NRILNKLDVSDRTQAVIVAVKRGI 206 >UniRef50_C1TQ52 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TQ52_9BACT Length = 214 Score = 268 bits (688), Expect = 6e-71, Method: Composition-based stats. Identities = 54/208 (25%), Positives = 107/208 (51%), Gaps = 6/208 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH + ++ LL + D+E++AE G A+ ++PD+ ++DV +P ++ Sbjct: 3 IKILLADDHKILREGVKALLNRQEDMEVVAEAGNGEEALSIAGEIRPDVTVMDVMMPQMD 62 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ + + S ++ +S D + GA GF+ K ++ A+ +G Sbjct: 63 GIEATRRIVEDGSS-RVVALSMYADRSFVSEMLKVGALGFLLKDCASTELVEAVRKVMDG 121 Query: 120 YCYFPFSLNRFVG----SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 Y S++ V S D ++ L+ +E ++ + +G N ++AE++ +S KTV Sbjct: 122 EIYLGPSISHIVAKLYVSSLHDPDDIEPLTPREKEILMLLAEGNTNREVAERLHLSIKTV 181 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKI 203 T++ +M KL+ K+L DL +A RN + Sbjct: 182 GTHRQHIMNKLKLKNLADLVKYAIRNGM 209 >UniRef50_A6GFX0 Two component transcriptional regulator, LuxR family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GFX0_9DELT Length = 220 Score = 268 bits (688), Expect = 6e-71, Method: Composition-based stats. Identities = 52/211 (24%), Positives = 116/211 (54%), Gaps = 8/211 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++++DH + ++ LL D+E++ E+ +G +AV+ E L PD+V++D+++P ++ Sbjct: 5 VRVLLVEDHTIVREGLKALLTATEDLEVVGEVADGRAAVEAAERLAPDVVVMDINMPKLD 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ +R++ + ++I+S + Y + AGA+G++ K G+++++ AI G Sbjct: 65 GVGATREIREKVNAPRVLILSMYDGEEYVRPAIRAGASGYLLKGSGLSDLVTAIREVAGG 124 Query: 120 YCYFPFSLNRFVGSLTS-------DQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 +F ++ + + + DSL+K+E V+ + +GK + +IA+ + +S Sbjct: 125 NAFFSPTVAKILLQESRGERSVKEAPDPADSLTKREREVLTLVGEGKSSPEIAKILGLSV 184 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 KT+ ++ R+M KL ++ L A R + Sbjct: 185 KTIEGHRGRIMAKLGVHNVAGLVRQAIRIGL 215 >UniRef50_A4VZN8 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=52 Tax=Bacilli RepID=A4VZN8_STRS2 Length = 213 Score = 268 bits (687), Expect = 9e-71, Method: Composition-based stats. Identities = 51/204 (25%), Positives = 102/204 (50%), Gaps = 1/204 (0%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH + +++ L + D+E++AE ++G + + +KPD+V++D+ +P + Sbjct: 4 IRVMLVDDHEMVRLGLKSYLNLQPDVEVVAEASDGEEGLAKALEVKPDVVVMDLVMPKMT 63 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ L K I+I+++ D+ +AGA G++ K + I+AAI G Sbjct: 64 GVEATLALLKEWPQAQIVILTSYLDNEKIYPVLEAGARGYMLKTSSADEILAAIRKVALG 123 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 + + V D L+ +E ++ + G DN IA++ FIS KTV T+ Sbjct: 124 EYAIETEVEKKVEHHKRHPDLHDDLTAREREILTLLAKGYDNQRIADESFISLKTVKTHV 183 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 S ++ KL +A ++ + Sbjct: 184 SNILSKLAVSDRTQAVVYAFQHGL 207 >UniRef50_D1C1C8 Two component transcriptional regulator, LuxR family n=3 Tax=Bacteria RepID=D1C1C8_SPHTD Length = 237 Score = 268 bits (686), Expect = 1e-70, Method: Composition-based stats. Identities = 55/210 (26%), Positives = 105/210 (50%), Gaps = 7/210 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 ++ +++DDH L A+R+LL + DI ++ E +G SA Q E PD++++D+ +PGV+ Sbjct: 23 ISVLLVDDHVLFRQALRHLLEAEPDIRVIGEAGDGRSAQQLAERFHPDVILMDISMPGVD 82 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ L+ + III++ + + AGA+ ++ K + +I AI A G Sbjct: 83 GVTATRDLKAGIPNTKIIILTMFAEDGHVIRAIRAGADAYLLKNSESSKVIDAIRAVARG 142 Query: 120 YCYFPFSLNRFVG------SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 L + S +++ + L+++EI ++R + G N +IA ++ ++ Sbjct: 143 ESVIEPQLATKLLNEFRRISEFREEETVAGLTEREIQLLRLVASGMSNKEIAAELSLAES 202 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TV S L EKL+ K +A + + Sbjct: 203 TVKNRLSLLFEKLDVKDRTQAAIYALSHGL 232 >UniRef50_A9B5L0 Two component transcriptional regulator, LuxR family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B5L0_HERA2 Length = 207 Score = 268 bits (686), Expect = 1e-70, Method: Composition-based stats. Identities = 47/204 (23%), Positives = 101/204 (49%), Gaps = 1/204 (0%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDHP+ + +L + D E + + +G AV +E +PD+V++D+ +P ++ Sbjct: 2 IRVLVVDDHPVVRHGLMAMLGWEQDFEPVGDAADGQQAVNLIEQQQPDVVLLDLRLPQLS 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+V+ R + ++++ + Y +AGA G++ K + AI + G Sbjct: 62 GIEVMRHTRASAPNTRFLVLTTYDTDEYIGPALNAGAAGYLLKDASPEEVFRAIRSIYEG 121 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 + V + + D LS++E+ V++ ++ G+ N IA + IS T+ ++ Sbjct: 122 GAALQSGIAARVLKRLATEPAEDELSQRELDVLQLLVRGESNKAIALSLNISENTIKSHV 181 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 S + KL+ +S + A + + Sbjct: 182 SHIFSKLDVRSRAEAVAVALQRGL 205 >UniRef50_D2AX12 Response regulator receiver protein n=100 Tax=Actinobacteria (class) RepID=D2AX12_STRRD Length = 239 Score = 267 bits (685), Expect = 1e-70, Method: Composition-based stats. Identities = 50/212 (23%), Positives = 86/212 (40%), Gaps = 9/212 (4%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I+DD PL + +L E++ E G AV L+PD+V++D+ +P ++ Sbjct: 11 IRVLIVDDQPLVRRGLSLILSPDPSFEVVGEAENGAQAVTLARRLRPDVVVMDIRMPVLD 70 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ L ++ +S + Y AGA GF+ K ++ AAI G Sbjct: 71 GVGATRELAATVPDCRVLALSTFDLDEYVVGALRAGAYGFLPKDSSPEDLSAAIRTVHAG 130 Query: 120 YCYFPFSLNRFVGS--------LTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFIS 171 L + S L L+ +E+ V R + G DN I+ + IS Sbjct: 131 EAAVAPRLLTRLISTYVRAPHGTRPTPTGLGELTPREVEVWRLMATGLDNTGISRTLDIS 190 Query: 172 NKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TV Y + + +KL + A + + Sbjct: 191 LSTVKNYITSIFDKLAVRDRAQAVIVAYESGL 222 >UniRef50_Q2RMH6 Two component transcriptional regulator, LuxR family n=8 Tax=Bacteria RepID=Q2RMH6_MOOTA Length = 221 Score = 267 bits (684), Expect = 2e-70, Method: Composition-based stats. Identities = 55/213 (25%), Positives = 106/213 (49%), Gaps = 10/213 (4%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIP-GV 58 + +++DDH L +R LL + DIE++ E + E +P++V++D+ + G Sbjct: 3 IRVMLVDDHALVREGLRALLEREGDIEVVGETGSAAGVLALAEESRPEVVVMDLQLGAGR 62 Query: 59 NGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKN 118 NG++ L +++ ++I+S +D ++GA G+V K+ G+ + AI Sbjct: 63 NGVEATRELVEKKPEIKVVILSMYDDEELVFRALESGARGYVLKRAGIEELTTAIRLVAR 122 Query: 119 GYCYFPFSLNRFVGSLTSDQQKL--------DSLSKQEISVMRYILDGKDNNDIAEKMFI 170 G Y + R V ++ L+++E+ V+R +G N +IA ++ I Sbjct: 123 GEAYLDPQIARRVIEGLQERLPFTRASRPEGPELTERELEVLRLAAEGLTNAEIARRLVI 182 Query: 171 SNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 S KTV +++ +M+KL +DL +A +N I Sbjct: 183 SVKTVQAHRANIMQKLGLHDRVDLVKYAIKNGI 215 >UniRef50_A1HU08 Two component transcriptional regulator, LuxR family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HU08_9FIRM Length = 216 Score = 267 bits (684), Expect = 2e-70, Method: Composition-based stats. Identities = 70/208 (33%), Positives = 116/208 (55%), Gaps = 5/208 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I+DDH L + +R +L + DIE++ E +G + + ++PD+V++D+ +P ++ Sbjct: 4 IKVLIVDDHTLMRSGLRLMLSAQEDIEVVGEAADGSGGIAMAQKMRPDVVLLDISMPEMS 63 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ L+TL Q +I+++ D Y K GA G+V KK + + A+ A +G Sbjct: 64 GLECLKTLLANQPDLRVILLTMHEDARYVKEGFALGAMGYVLKKAADDVLYQAVRAVYSG 123 Query: 120 YCYFPFSLNRFVGSLTSDQQKLD----SLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 Y S+ + V + +++ + D LS QE V+ I G N +IAE++ IS KTV Sbjct: 124 EMYIQPSITKAVVAELTERPRADDLRKPLSDQEKKVLSLIAAGYANREIAEQLVISVKTV 183 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKI 203 TYK R+MEKL CK DL FA N + Sbjct: 184 ETYKYRIMEKLNCKKRSDLVKFALDNGL 211 >UniRef50_C7QHJ1 Two component transcriptional regulator, LuxR family n=29 Tax=Actinobacteria (class) RepID=C7QHJ1_CATAD Length = 222 Score = 267 bits (684), Expect = 2e-70, Method: Composition-based stats. Identities = 47/209 (22%), Positives = 100/209 (47%), Gaps = 6/209 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I+DDHP+ +R + ++ E++ E ++G A+ R PD+V++D+ +P + Sbjct: 12 LRLLIVDDHPIVRDGLRGVFDGEDGFEVVGEASDGAQALVRAAESGPDVVLMDLRMPTMG 71 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + LR Q + +++++ + +AGA G++ K ++I A+ AA G Sbjct: 72 GVEAIRRLRVEQPAVRVLVLTTYDTESDVLPAIEAGATGYLLKDAPREDLIRAVRAAAAG 131 Query: 120 YCYFPFSLNRFVGSLTSDQ-----QKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 ++ + + + D+L+++E+ V+R + G N + A K+FIS T Sbjct: 132 QPVLAPTVAQRLMTRVQTPLAEPAPPGDALTERELEVLRLVASGTTNRETARKLFISEAT 191 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 V T+ K + A + + Sbjct: 192 VKTHLLHAYAKFGVRDRAAAVAEAYKRGL 220 >UniRef50_Q1AVR6 Two component transcriptional regulator, LuxR family n=17 Tax=Bacteria RepID=Q1AVR6_RUBXD Length = 220 Score = 266 bits (683), Expect = 2e-70, Method: Composition-based stats. Identities = 54/211 (25%), Positives = 99/211 (46%), Gaps = 9/211 (4%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I++D L +R LL + +E++ E +G A++R+ +P++V++DV +P ++ Sbjct: 5 VRVMIVEDQALMREGLRTLLDLEEGVEVVGEAADGVEALERLPGARPEVVLVDVRMPRMD 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GIQ++E L + II++ +D Y AGA G++ K + AAIE G Sbjct: 65 GIQLIERLGREHPEVAAIILTTFDDDEYVFRGLRAGARGYILKDTPSEELAAAIEKVHRG 124 Query: 120 YCYFPFSLNRFVGS--------LTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFIS 171 + V S Q LS++E+ V+R + G N +IA ++I+ Sbjct: 125 EAVLDGPITLKVISELGRLSKGPAGPQPGSGGLSEREMEVLRLVASGASNREIARALYIT 184 Query: 172 NKTVSTYKSRLMEKLECKSLMDLYTFAQRNK 202 TV + S ++ KL + +A Sbjct: 185 EGTVKNHISSILRKLGFRDRTQAALYALERG 215 >UniRef50_A0K2I9 Two component transcriptional regulator, LuxR family n=5 Tax=Actinomycetales RepID=A0K2I9_ARTS2 Length = 250 Score = 266 bits (683), Expect = 2e-70, Method: Composition-based stats. Identities = 47/236 (19%), Positives = 103/236 (43%), Gaps = 33/236 (13%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DD PL R +L ++D+ I+ E ++G A+++V + PD+V++DV +P ++ Sbjct: 7 IKVLLVDDQPLLRMGFRLILEGEDDLRIVGEASDGAEAIRQVREVDPDVVLMDVRMPVLD 66 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ + +II++ + Y AGA+ F+ K + +++A+ +G Sbjct: 67 GIEATRAVTSSGSHAKVIILTTFDLDEYAFAGLQAGASAFLLKDVAPSELVSAVRVVASG 126 Query: 120 YCYFPFSLNRFVGSL--------------------------------TSDQQKLDSLSKQ 147 + R + L++L+ + Sbjct: 127 DAVVAPRVTRRLLEAYVREGNPPAVNGQRAGTSAPAAGRGRHSLGEEQQRDPLLEALTPR 186 Query: 148 EISVMRYILDGKDNNDIAEKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 E+ ++ + +G N +IA + F+S TV T+ R++ KL + + +A + Sbjct: 187 EMEMLEAMAEGLSNAEIAHRFFLSEATVKTHVRRILAKLHLRDRVQAVVYAYETGL 242 >UniRef50_D1XHI5 Two component transcriptional regulator, LuxR family n=4 Tax=Streptomyces RepID=D1XHI5_9ACTO Length = 222 Score = 266 bits (683), Expect = 2e-70, Method: Composition-based stats. Identities = 47/213 (22%), Positives = 90/213 (42%), Gaps = 12/213 (5%) Query: 4 IIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 ++ DD + I LL + IE++ +G AV V PD+V++D+ +P +G++ Sbjct: 2 VVADDQAIVREGIVMLLGLLPGIEVVGAAKDGDEAVALVAEKAPDVVLMDLRMPRCDGVE 61 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 +RK +++++ D AGA G+++K I+ AI+A +G Sbjct: 62 ATRRIRKEHPRTQVVVLTTFADDDSLFTALQAGARGYLTKDARGEEIVQAIDAVMSGEAG 121 Query: 123 FPFSLNRFVGSLTS-----------DQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFIS 171 + R + + + D L+ +E V+ I +G N +IA + +S Sbjct: 122 LSPKVQRRLLERVTGSETVPAPCALPSELPDGLTPREAEVLVLIAEGLSNREIARALHVS 181 Query: 172 NKTVSTYKSRLMEKLECKSLMDLYTFAQRNKIG 204 TV T+ + L K + +A + Sbjct: 182 AATVKTHINNLFAKTGARDRTQAVRYAYGRGLA 214 >UniRef50_P55184 Uncharacterized transcriptional regulatory protein yxjL n=1 Tax=Bacillus subtilis RepID=YXJL_BACSU Length = 218 Score = 266 bits (683), Expect = 3e-70, Method: Composition-based stats. Identities = 54/211 (25%), Positives = 98/211 (46%), Gaps = 8/211 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + + DD PL R ++ + D+ + E +G + + KPD++++DV +P + Sbjct: 6 IRVALADDQPLVREGFRYVINAQTDMTVSGEAGDGHDIIALAKQTKPDVILMDVQMPRCS 65 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ + + + I+I++ + Y AGA G++ K +I AI AA G Sbjct: 66 GIEAAKDIMSALPNTKIVILTTFDTEEYVFEGIRAGAVGYLLKDTLPEELIDAIRAAARG 125 Query: 120 YCYFPFSLNRFVG-------SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 F + T ++ + +K+E+ V++ + G N DIAEK+F+S Sbjct: 126 EAIFRTVTAAKIISETFRAKQQTHAEELAEPFTKRELEVLQQMAYGLRNEDIAEKLFVSE 185 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TV T+ R+++K + FA RN I Sbjct: 186 STVKTHVHRILQKCNAQDRTQAVVFAIRNGI 216 >UniRef50_B2J8J5 Two component transcriptional regulator, LuxR family n=3 Tax=Cyanobacteria RepID=B2J8J5_NOSP7 Length = 211 Score = 266 bits (682), Expect = 3e-70, Method: Composition-based stats. Identities = 44/204 (21%), Positives = 90/204 (44%), Gaps = 5/204 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDHP+ A+ L ++D+ ++ +G A++ +PD+ ++D+ +P + Sbjct: 9 IRILLADDHPILGQALTMFLQCESDMTVIGHAGDGREALELFHQHQPDVALMDLRMPKME 68 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G + + + I++++ + AGA G++ K N ++ AI G Sbjct: 69 GADAIAAICAKFKHARIVVLTTFDGDEDIYRGLRAGAKGYLLKGAEPNELLDAIRTVHKG 128 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 Y P ++ + S + LS +E+ V+R I GK+N I+ + I+ TV + Sbjct: 129 QKYIPPTIAAKLAERMSS----EELSDRELEVLRLIAKGKNNQQISNVLNIAESTVRFHT 184 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 + + KL A I Sbjct: 185 NNIFGKLNVSDRTQALVTALNRGI 208 >UniRef50_Q1IXN1 Two component transcriptional regulator, LuxR family n=10 Tax=Bacteria RepID=Q1IXN1_DEIGD Length = 221 Score = 266 bits (682), Expect = 3e-70, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 100/205 (48%), Gaps = 1/205 (0%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH + +R L + IE++ E G A+ E L PD+VI+D+ +P ++ Sbjct: 10 VRVLLVDDHAVVRQGLRLFLSLDSQIEVVGEAANGEEALAAAERLHPDVVIMDLMMPVMD 69 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GIQ LR++ +I +++ + DAGA G++ K + + AI AA G Sbjct: 70 GIQATRLLRRQHPDTEVIALTSTLEEHKVNGAIDAGAMGYMLKDASSDTLADAIHAAARG 129 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 R + + ++L+ +E+ V++ I G N DIA ++ TV T+ Sbjct: 130 EVRLHPEAARRLVRDFRTPEMRETLTPKEVIVLQLIARGYSNRDIARDQGVTEATVKTHV 189 Query: 180 SRLMEKLECKSLMDLYTFAQRNKIG 204 SRL+ KL +S +A R+ + Sbjct: 190 SRLLGKLGLESRTQAALYALRHGLA 214 >UniRef50_A3Y699 Putative two component system response regulator n=1 Tax=Marinomonas sp. MED121 RepID=A3Y699_9GAMM Length = 226 Score = 266 bits (681), Expect = 4e-70, Method: Composition-based stats. Identities = 50/213 (23%), Positives = 104/213 (48%), Gaps = 10/213 (4%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I+DD L + + +L ++DIE++AE G A++ + PD++++D+ +P ++ Sbjct: 3 IRIVIVDDQALVRSGLSMILDHQSDIEVVAECANGLEAIEAAKKYIPDLILMDIRMPEMD 62 Query: 60 GIQVLETLR-KRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKN 118 G+ + I+I+S + Y GA+GF+ K + ++AA+ Sbjct: 63 GLSATSAILGDLNIQTRIVILSTFDLDEYIYRALREGASGFILKDTPPDELVAAVHVVAQ 122 Query: 119 GYCYFPFSLNRFVGSLTSDQQK--------LDSLSKQEISVMRYILDGKDNNDIAEKMFI 170 G S+ + + ++ + +D L+ +E +++ + G +N++IA ++FI Sbjct: 123 GGALLTPSITKKLIGAFAELKPSHTNVTGHIDRLTTREKEILKNLALGFNNSEIASRLFI 182 Query: 171 SNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TV T+ S L+ KLE + FA N + Sbjct: 183 GESTVKTHVSSLLSKLELRDRAQAVIFAYENGV 215 >UniRef50_A5V148 Two component transcriptional regulator, LuxR family n=2 Tax=Bacteria RepID=A5V148_ROSS1 Length = 216 Score = 266 bits (681), Expect = 4e-70, Method: Composition-based stats. Identities = 44/209 (21%), Positives = 95/209 (45%), Gaps = 6/209 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 ++ +I++D L +R +L + I ++ E +G V+ L+PDI+++DV +P +N Sbjct: 6 ISILIVEDQTLMRQGLRTILDLEESIRVVGEARDGAEGVREALRLRPDIILMDVQMPVMN 65 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + + II+++ + Y AGA G++ K ++ I G Sbjct: 66 GVEAIRAIIAAWSQARIIVLTTFDRDDYVFQSVRAGAMGYLLKDAPAEALLQTIRRVHAG 125 Query: 120 YCYFPFSLNRFVGSLTSDQQKLD-----SLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 + + + ++ LS++E V+ + G N +IA ++ I+ T Sbjct: 126 EVFIQPEIASRTLREAATGRRRAGTIPFDLSEREREVLVLLAQGLSNREIAGRLSITEGT 185 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 V + S ++ KL+ ++ A+R + Sbjct: 186 VKNHVSNILAKLQAENRTQAANIARREGL 214 >UniRef50_B8FDP3 Two component transcriptional regulator, LuxR family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FDP3_DESAA Length = 219 Score = 265 bits (680), Expect = 5e-70, Method: Composition-based stats. Identities = 53/210 (25%), Positives = 108/210 (51%), Gaps = 7/210 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I +DH L +++L+ +++ +++ E G +A++ KPD++++D+ +P +N Sbjct: 6 IKILITEDHALVRKGLKSLISSRSEFQVVGEADNGLAAIEMTRKCKPDLILLDLSMPKMN 65 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ + L+K + I++++ Y GA+G++ K + + AI A +G Sbjct: 66 GLATMRQLKKERPEVKILVITMHASQDYLIPALKEGADGYLLKGDDPQELFMAIRAIMDG 125 Query: 120 YCYFPFSLNRFVG------SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 Y L+ + L SL+++E V + + +G N IA+ +FIS K Sbjct: 126 KAYLSSDLSGQLIHSVINPDTREAADPLASLTQREKEVFQLVAEGNTNQQIADLLFISPK 185 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TV +++ LM+KL+ S ++ FA +N I Sbjct: 186 TVDKHRTNLMKKLDLHSAREVSNFALKNGI 215 >UniRef50_C6D0G6 Two component transcriptional regulator, LuxR family n=17 Tax=Bacteria RepID=C6D0G6_PAESJ Length = 225 Score = 265 bits (680), Expect = 5e-70, Method: Composition-based stats. Identities = 48/212 (22%), Positives = 104/212 (49%), Gaps = 14/212 (6%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH + + I L + D E++ E G AV++ L+PDIV++D+++P ++ Sbjct: 3 IKILLADDHQIVLKGISFFLAMQPDFELVGEAHNGKEAVEKAGELQPDIVLMDLNMPIMD 62 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ ++++ ++++++ D + GA G++ K + + AI +A G Sbjct: 63 GIEASALIKEQHPHIKVLVLTSFADQSHIVPALQTGAIGYMLKDVEPDQLAEAIRSAYKG 122 Query: 120 YCYFPFSLNRFVG-------------SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAE 166 ++R + ++ + L++L+ +E+ V+ + G N DIA+ Sbjct: 123 NIQLHPDISRALLSRPEPEPRPEPVIQHSNRDKSLEALTPRELEVLELLTKGLSNKDIAQ 182 Query: 167 KMFISNKTVSTYKSRLMEKLECKSLMDLYTFA 198 + ++ KTV T+ S ++ KL+ FA Sbjct: 183 TLIVAEKTVKTHVSSILSKLDLSDRTQAALFA 214 >UniRef50_B8FFJ9 Two component transcriptional regulator, LuxR family n=2 Tax=Desulfobacteraceae RepID=B8FFJ9_DESAA Length = 212 Score = 265 bits (679), Expect = 7e-70, Method: Composition-based stats. Identities = 57/208 (27%), Positives = 110/208 (52%), Gaps = 5/208 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH + A +R ++ DI+++ E + G A+ PD+ ++D+ +PG++ Sbjct: 2 IRVLLADDHVIVRAGLRRIIEDSEDIKVIVEASNGKEAIDLTLEHCPDVAVVDISMPGID 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++V+ L ++I++ + Y +AGA G+++KK ++ AI +G Sbjct: 62 GLEVVSRLHAELPDLPMLILTMHEEEQYVVRAIEAGAMGYMTKKSAPEQLVTAIRKLHSG 121 Query: 120 YCYFPFSLNRFVG----SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 + + + LDSLSK+E+ V+R++ G N +IA+ IS KTV Sbjct: 122 SRFLTEEAAELLALRVSRWSKGGSLLDSLSKRELQVLRHLASGHTNREIADSYHISVKTV 181 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKI 203 TY++RL++KL ++ D+ FA +N + Sbjct: 182 DTYRARLLKKLNLRNNADISRFAIQNNL 209 >UniRef50_D1C9Z8 Two component transcriptional regulator, LuxR family n=4 Tax=Bacteria RepID=D1C9Z8_SPHTD Length = 212 Score = 265 bits (679), Expect = 7e-70, Method: Composition-based stats. Identities = 44/208 (21%), Positives = 104/208 (50%), Gaps = 5/208 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDHP+ + +L + D+ ++ E +G AVQ+ LKPD+V++D+ +PG + Sbjct: 2 IRILVVDDHPVVREGLVAILEAQEDLTVVGEAGDGDQAVQQYRDLKPDVVLMDLAMPGTD 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+Q ++ +++ + +++++A + AGA+G++ K +I A+ G Sbjct: 62 GVQAIQEIKRIDPNARVVVLTAYDTDERILQAVQAGASGYLLKGAPREDIFRAVRVVYRG 121 Query: 120 YCYFPFSLNRFVGSLTSD----QQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 + + + D + + L+ +E+ V+ + G N +IA ++ I+ +TV Sbjct: 122 GSLLEPVVAGKLLNRMGDLLRGEPVEEELTARELDVLTLMARGLRNKEIAYELSITERTV 181 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKI 203 + + + KL+ + + A + + Sbjct: 182 KFHANAIYRKLDVSGRTEAVSKAIQRGL 209 >UniRef50_B5JFN7 Response regulator receiver domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JFN7_9BACT Length = 220 Score = 265 bits (679), Expect = 7e-70, Method: Composition-based stats. Identities = 44/215 (20%), Positives = 98/215 (45%), Gaps = 12/215 (5%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DD L + ++ LL +D +EI+ E G A++ L+P IV++D+++P ++ Sbjct: 5 IQIVLADDQALFLEGLKTLLSLDDSLEIVGECHNGQEALEACRRLRPQIVLMDLNMPVMD 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ + +++ ++ ++ +D AG++G++ K ++ AI A +G Sbjct: 65 GVAATKAIKQELPEVNVLTLTTFDDDERVFEALKAGSSGYLLKDTPSKQLVEAIRAVSSG 124 Query: 120 YCYFPFSLNRFVGSLTSDQQKL-----------DSLSKQEISVMRYILDGKDNNDIAEKM 168 + S+ V + S + LS++E V+ ++ G N +IA + Sbjct: 125 ESFLQPSIASKVLAEFSRMSGPAAVKKAPVQLREPLSQREEQVLVWLSRGCSNKEIASHL 184 Query: 169 FISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 ++ TV + S ++ KL A+ + Sbjct: 185 DLAEGTVKNHVSNVLGKLGVLDRTQAALMARDLGL 219 >UniRef50_B9XC41 Two component transcriptional regulator, LuxR family n=7 Tax=Verrucomicrobia RepID=B9XC41_9BACT Length = 267 Score = 265 bits (678), Expect = 9e-70, Method: Composition-based stats. Identities = 53/211 (25%), Positives = 107/211 (50%), Gaps = 8/211 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH + +R LL + DI+I+ E G AVQ + L PD++++D+ +P +N Sbjct: 31 IRVLLADDHTVVRQGLRALLSGEKDIQIVGEAGTGREAVQMAQKLTPDVILMDIAMPLMN 90 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + + S ++++S+ + Y + +AGA+G++ K N+++AA+ G Sbjct: 91 GLEATRKIAEVAPSAKVLVLSSYGEDDYVQKLTEAGASGYLIKHAAANDLVAAVRETHKG 150 Query: 120 YCYFPFSLNRFVGSLTSDQ-------QKLDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 +F + + + + L+++E+ + +I+ GK N IA M IS Sbjct: 151 NAFFSPGIAKRLRDQVRAGFANGNGTKASFELTERELETLGHIVAGKPNKVIACDMGISI 210 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 KTV ++ ++M KL + L +A + Sbjct: 211 KTVEKHRQQVMNKLNIHEVASLTRYAIAKGM 241 >UniRef50_Q3Z7M1 DNA-binding response regulator, LuxR family n=7 Tax=Bacteria RepID=Q3Z7M1_DEHE1 Length = 232 Score = 265 bits (678), Expect = 1e-69, Method: Composition-based stats. Identities = 52/211 (24%), Positives = 107/211 (50%), Gaps = 8/211 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 ++ ++ DDH + ++ LL + D E++ E ++G AV VE+L+P +++ D+ + G++ Sbjct: 2 ISIVLADDHQIVRHGLKALLEAEADFEVVGEASDGIEAVNLVESLQPGVLVTDLMMGGMS 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+V + KR ++I+S + Y AGA +V K ++ ++ A G Sbjct: 62 GIEVTYQVVKRSPKTAVVILSMYGNEAYVHEALRAGARAYVLKDSTSEELVRSVREAVQG 121 Query: 120 YCYFPFSLNRFVGSLTSDQ-------QKLDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 + Y L+ ++ ++L+ +E V+ + G +IAE++FIS Sbjct: 122 HRYLSSPLSEKAIEAYMEKSAEATSLDPYETLTIREREVLHLVAQGHTCAEIAERLFISP 181 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 +TV +++ +M KL+ ++ L +A + I Sbjct: 182 RTVEVHRANMMRKLDLRNQTQLLRYALQRGI 212 >UniRef50_D1CF52 Two component transcriptional regulator, LuxR family n=2 Tax=Bacteria RepID=D1CF52_THET1 Length = 1648 Score = 264 bits (677), Expect = 1e-69, Method: Composition-based stats. Identities = 44/207 (21%), Positives = 93/207 (44%), Gaps = 4/207 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 + +I DDH L I++LL +++ E + G AV+ V L PD+V++D+ +P + G Sbjct: 1439 LRVVIADDHALFRDGIKSLLESEGFQMVGEASNGQEAVELVHNLSPDLVLMDLSMPVMGG 1498 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 + + + + S +I+++A + AGA GF+ K + G Sbjct: 1499 LDAIRLISADKPSVKVIVLTASEEDKDLFEAIKAGAQGFIPKNLESEEFFQLLRNVIRGE 1558 Query: 121 CYFPFSLNRFVGSLTSDQ---QKLDSLSKQEISVMRYILDGK-DNNDIAEKMFISNKTVS 176 L + S L L+ +E +++ +++G D++ ++ +S TV Sbjct: 1559 PAITPRLAGKLIDEFSRPVRSSSLQMLTDREQEILQLLVNGVTSTKDLSRQLGVSEHTVK 1618 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKI 203 + ++ KL +S + +A ++ + Sbjct: 1619 YHLRNILSKLHLQSRAQVVAWAVQHGL 1645 >UniRef50_C6E2Z1 Two component transcriptional regulator, LuxR family n=2 Tax=Geobacter RepID=C6E2Z1_GEOSM Length = 216 Score = 264 bits (677), Expect = 1e-69, Method: Composition-based stats. Identities = 53/210 (25%), Positives = 102/210 (48%), Gaps = 7/210 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH + IR LL + D+ ++AE G A + L P +V++D+ +PG+N Sbjct: 2 IKVMVVDDHSIVREGIRILLERFPDLSVVAEADNGRKASELAADLAPHVVLMDMTMPGLN 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI + L ++I+S D + AGA G++ K ++ A+ G Sbjct: 62 GIDATQRLLAACPEVRVLILSMHKDKRFVSQAFRAGARGYLLKDCASAELVQAVRQVACG 121 Query: 120 YCYFPFSLNRFVGSLTSDQ------QKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 Y + V + Q L+ +E V++ I +G + + A ++ I+ K Sbjct: 122 EMYVCHGIIGVVVHDYVTRLPESLTQPEVPLTPREREVLQLIAEGNNAKNAAYQLNINVK 181 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TV T++ ++M+KL+ +S+ +L +A R + Sbjct: 182 TVDTHRQQIMKKLKMRSVAELTKYAIREGL 211 >UniRef50_B9XL75 Two component transcriptional regulator, LuxR family n=1 Tax=bacterium Ellin514 RepID=B9XL75_9BACT Length = 234 Score = 264 bits (677), Expect = 1e-69, Method: Composition-based stats. Identities = 52/211 (24%), Positives = 107/211 (50%), Gaps = 8/211 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDHP+ + + L IEI+ E +G V +V L P+IV++D+D+P ++ Sbjct: 19 IKVLLADDHPVVRKGLGSCLNNLEHIEIVGEAVDGQETVSKVRELSPEIVLMDLDMPTMS 78 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + +R+ ++I+S + Y +GA G+V K + ++ AIE+ G Sbjct: 79 GLEATKIIRREFPLVKVLILSIHTNKDYVLQIIKSGAQGYVLKDAPLTELVRAIESVHGG 138 Query: 120 YCYFPFSLNRFVGSLT-------SDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 +F +++ + + L+ +E V+ I +G+ N ++A +M + Sbjct: 139 GAFFSPDISQIMLDQYLAEATNGEESGNSKKLTNRETEVLSMIAEGQSNKEMASRMGVGV 198 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 +TV T++ R+M KL+ ++ L +A + I Sbjct: 199 RTVETHRERVMNKLDIHNVAGLTKYAIAHGI 229 >UniRef50_B1ZY58 Two component transcriptional regulator, LuxR family n=3 Tax=Bacteria RepID=B1ZY58_OPITP Length = 223 Score = 264 bits (676), Expect = 1e-69, Method: Composition-based stats. Identities = 46/204 (22%), Positives = 100/204 (49%), Gaps = 5/204 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDHP + L+ + ++++AE ++G A++ + L+PD+V++D+ +PG+ Sbjct: 20 IRVLVVDDHPPMRVGLVALIRSQPGMDVVAEASDGEEAIEIYDDLQPDVVLMDLRMPGMG 79 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + +RK+ +I++S + +GA ++ K + I + + A G Sbjct: 80 GVEAILAIRKKAPEARVIVLSTYDWDEDIHRALQSGAKSYLLKDMPIEEIASTVRAVYAG 139 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 P S+ + + L+++E V+ ++ G+ N +IA + IS TV ++ Sbjct: 140 DTSLPRSVAERLTERAQR----EQLTERERDVLESLIKGRSNKEIASSLCISEDTVKSHL 195 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 L KL + A R+ I Sbjct: 196 KTLFAKLRVRDRTGAAIEAIRHGI 219 >UniRef50_B1Y743 Two component transcriptional regulator, LuxR family n=6 Tax=Bacteria RepID=B1Y743_LEPCP Length = 211 Score = 264 bits (676), Expect = 1e-69, Method: Composition-based stats. Identities = 55/207 (26%), Positives = 105/207 (50%), Gaps = 4/207 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 M I DDHP+ ++ LL + D + E + G + + D+ ++D +PG Sbjct: 3 MRVFIADDHPVVRQGLKQLLGAEADFSVAGEASSGHEVIDQCGRFAWDVAVLDYRMPGKG 62 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI +++ LR+R ++++S + Y AGA G+++K+ +++ AI G Sbjct: 63 GIDLIKELRQRFPDRPVLVLSVCPEDQYAMRVLRAGAAGYLTKESAPEDLVNAIRKVARG 122 Query: 120 YCYFPFSLNRFVG---SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 + +L + S D+ LS +E +M + GK +IA+++F+S T+S Sbjct: 123 GRFVSAALGEQLALSLSTGGDEPLHCRLSDREYQIMWLLASGKKVGEIAQQLFLSPNTIS 182 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKI 203 TY+ R++EKL+ KS +L +A +++ Sbjct: 183 TYRKRILEKLDLKSNAELMRYAIGHQL 209 >UniRef50_UPI0001B502C9 two component LuxR family transcriptional regulator n=1 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B502C9 Length = 229 Score = 264 bits (676), Expect = 1e-69, Method: Composition-based stats. Identities = 50/204 (24%), Positives = 101/204 (49%), Gaps = 1/204 (0%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I DDH + +R +L + N+I+++ E T G AV+ L PD+V++D+ +P ++ Sbjct: 3 LRVLIADDHAVVRQGLRMILGLDNEIKVVGETTNGREAVRLARELCPDVVLMDLLMPVMD 62 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ +R+ ++ +++ D AGA GF+ K +++ A++AA G Sbjct: 63 GVSATAEIRQDIPEVEVVALTSSLDDAMVMGAVRAGAIGFLLKNAEADDLRNAVKAAAAG 122 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 + + + + + L+++E V+ + GK N +IA + I +TV TY Sbjct: 123 QIHVSPAAISRLMGQVREPSGPEQLTERETEVLTMLARGKANKEIARDLRIGQQTVKTYV 182 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 S ++ KL S +A ++ + Sbjct: 183 SHILTKLGVHSRTQAAVYAVQSGL 206 >UniRef50_D1AEE5 Two component transcriptional regulator, LuxR family n=37 Tax=Bacteria RepID=D1AEE5_THECD Length = 244 Score = 264 bits (676), Expect = 2e-69, Method: Composition-based stats. Identities = 48/213 (22%), Positives = 103/213 (48%), Gaps = 11/213 (5%) Query: 2 NAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVET-----LKPDIVIIDVDI 55 ++ DDH L +R +L + D+ ++ E +G A+++V + D+ ++DV + Sbjct: 29 RILLADDHALVRRGVRLILDGEPDLWVVGEAGDGAEAIEQVRRRAGTPQEVDLAVLDVAM 88 Query: 56 PGVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEA 115 P + G+Q L + I+I++ ++ Y AGA G+V K +++ A A Sbjct: 89 PRMTGLQAARELSRMYPRLRILILTMHDNEQYLFEALKAGAAGYVLKSLADRDLVQACRA 148 Query: 116 AKNGYCYFPFS-----LNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFI 170 A G + + ++ ++ L+ +E +++ + +G + +IA+ +FI Sbjct: 149 AVRGEPFLYPGAISVLIRSYLEQARQGEEPETPLTPREEEILKLVAEGHSSREIADTLFI 208 Query: 171 SNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 S KTV +++ ++ KL K ++L +A R + Sbjct: 209 SVKTVERHRANILAKLGMKDRLELTRYAIRTGL 241 >UniRef50_B0C756 Two-component transcriptional regulator, LuxR family n=1 Tax=Acaryochloris marina MBIC11017 RepID=B0C756_ACAM1 Length = 224 Score = 263 bits (675), Expect = 2e-69, Method: Composition-based stats. Identities = 43/208 (20%), Positives = 103/208 (49%), Gaps = 6/208 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DD + ++ + +IEI+ E G +A+ + +TL+PD++++D+++P ++ Sbjct: 8 IRVLLVDDEDIVRYGLKAIAQGTPEIEIVGEAGSGKAAIAQAKTLQPDVILMDINMPQMD 67 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ + + + Q ++I++ ++ Y GA G++ K + I +I+ A G Sbjct: 68 GVTATQEISRIQPHAKVLILTTHDEAEYLVEAMQQGAVGYLLKNTPPEDFIQSIQQAHKG 127 Query: 120 YCYFPFSLNRFVGSLTSDQ-----QKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 Y L + + L + + ++ +E V++ + G N +I+E + I+ KT Sbjct: 128 YLQLGPGLGQKLCQLLKTPVRPQIEAFEGITPREQDVLKLVATGASNREISETLHITEKT 187 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQRNK 202 V + S ++ ++ +S L +A Sbjct: 188 VKNHVSSILSRVGVQSRTQLAIWANSAG 215 >UniRef50_Q1GIA7 Two component transcriptional regulator, LuxR family n=29 Tax=Alphaproteobacteria RepID=Q1GIA7_SILST Length = 233 Score = 263 bits (675), Expect = 2e-69, Method: Composition-based stats. Identities = 53/204 (25%), Positives = 104/204 (50%), Gaps = 3/204 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I+DDHP+ I+++L DIE++ ++ G A+ R E L PD++++D+++P V Sbjct: 24 IRVLIVDDHPMVAEGIQSILESYGDIEVVGAVSSGREAIARAEALVPDVILMDLNMPDVG 83 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ E +++R ++I+S + Y GA G+V K I AI+A G Sbjct: 84 GLSATEIIQERCPEIRVLILSMHDSPEYITTALSHGAVGYVLKDVQPEEIKTAIDAVMRG 143 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 Y + + + ++L+ +E +++ + GK N ++A+ + IS +TV T++ Sbjct: 144 EQYLCTGAAGSLSPQSQTSR--EALTGREQTILLELAQGKSNKEVAQALDISVRTVETHR 201 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 + KL S L +A + + Sbjct: 202 KNIKRKLGISSTAGLTRYALEHGV 225 >UniRef50_B4CWX5 Two component transcriptional regulator, LuxR family n=3 Tax=Verrucomicrobia RepID=B4CWX5_9BACT Length = 210 Score = 263 bits (675), Expect = 2e-69, Method: Composition-based stats. Identities = 46/204 (22%), Positives = 91/204 (44%), Gaps = 5/204 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH + + + L +++D+ ++ E G AV + PD+V++D+ +PG N Sbjct: 7 IRILVVDDHHVVRSGLAASLGLEDDLNVVGEAGNAGEAVTQFRKHHPDVVLMDLRLPGAN 66 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G LR+ +++ + + AGA G++ K +++AI A G Sbjct: 67 GTAATADLRREWPDARVLMFTTFDGEEDIYRAMQAGARGYLLKSAAREELLSAIRAVAAG 126 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 + +L + + + S +E V++ I GK N +IA + IS +TV + Sbjct: 127 ERHLSAALAQRLAGRVAAPDV----SDREREVLQLIARGKANKEIAAALGISEETVKRHA 182 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 S L K+ + R + Sbjct: 183 SNLFVKMGVADRAQATSEGIRRGL 206 >UniRef50_D1C6S1 Two component transcriptional regulator, LuxR family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C6S1_SPHTD Length = 223 Score = 263 bits (675), Expect = 2e-69, Method: Composition-based stats. Identities = 45/211 (21%), Positives = 98/211 (46%), Gaps = 8/211 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 ++ +++DDH L + +LL + D ++ E G AV+R L PD+V++D+D+PG++ Sbjct: 4 ISLLLVDDHALFREGLASLLSYQPDFTVVGEAASGEEAVERARELVPDVVLMDIDLPGID 63 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ ++++ +++++ +DH AGA G++ K ++ + G Sbjct: 64 GIEATRRIKRQLPEVRVVMLTVYDDHERLFQSIKAGAQGYLIKNIRSAELLDQLRGLARG 123 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDS-------LSKQEISVMRYILDGKDNNDIAEKMFISN 172 + + + ++ LS +E+ V+ + N +IA ++ IS Sbjct: 124 EAAISRRMAARILEEFARLERQAEILEPDGGLSPREVEVLELVALRLSNKEIAARLSISE 183 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TV + ++ KL+ S +A + + Sbjct: 184 HTVKNHLKNILAKLQLSSRRQAAAYAVAHGL 214 >UniRef50_B8GAC9 Two component transcriptional regulator, LuxR family n=3 Tax=Chloroflexus RepID=B8GAC9_CHLAD Length = 213 Score = 263 bits (673), Expect = 3e-69, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 110/206 (53%), Gaps = 5/206 (2%) Query: 3 AIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGI 61 +++DDH + A +R LL + D+ ++ E + +A+ + TL+PD++++D+ + +G+ Sbjct: 4 ILLVDDHAVLRAGLRLLLESQPDMVVVGEAEDSRTAITQATTLQPDLILLDLSLTNSSGL 63 Query: 62 QVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 121 +++LR I++++ +D Y + AGA+G+V K+ +IAAI A G Sbjct: 64 AAIQSLRAAAPQARILVLTMHDDEGYVRQALAAGAHGYVLKRAADAELIAAIRAVLRGEL 123 Query: 122 YFPFSLNRFVGS----LTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 Y +L R + +SLS++E V+ + G +IA ++ +S KTV T Sbjct: 124 YIHPALTRRLLEDILPQPQPTNPWESLSEREREVLVLVARGYTAAEIAGQLNLSPKTVET 183 Query: 178 YKSRLMEKLECKSLMDLYTFAQRNKI 203 Y++R MEKL +S L FA + + Sbjct: 184 YRTRGMEKLGLRSRAALVQFALDHNL 209 >UniRef50_A9AX03 Two component transcriptional regulator, LuxR family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AX03_HERA2 Length = 218 Score = 263 bits (673), Expect = 3e-69, Method: Composition-based stats. Identities = 48/211 (22%), Positives = 101/211 (47%), Gaps = 8/211 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I DD + + +L D+E++A + G AVQ T +PD++++D+ +P +N Sbjct: 2 IKLLICDDQAVVRDGLSIMLNLAPDLEVIAVASNGREAVQLSATWQPDLILMDLKMPIMN 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ + Q I++++ +D + AGA G++ K +++++AI +G Sbjct: 62 GIEATRQISAAQPLVKILVLTTYDDDEWLFEAIRAGAAGYLLKDMAHSDLVSAIRGTVSG 121 Query: 120 YCYFPFSLNRFVGSLTSDQQKLD-------SLSKQEISVMRYILDGKDNNDIAEKMFISN 172 Y ++ + S + + L+++E++V+ I G N IAE++ +S Sbjct: 122 KAYVDPNVTARLLSQVATSRNQPPASQLTGRLTERELAVLNLIATGHTNASIAEQLRLSE 181 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TV + S ++ KL+ A + + Sbjct: 182 GTVRNHVSTILSKLDVADRTQAALLAVEHGL 212 >UniRef50_D1VBH1 Two component transcriptional regulator, LuxR family n=29 Tax=Actinobacteria (class) RepID=D1VBH1_9ACTO Length = 248 Score = 263 bits (673), Expect = 4e-69, Method: Composition-based stats. Identities = 54/215 (25%), Positives = 100/215 (46%), Gaps = 12/215 (5%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I DD L A R L+ D+ ++AE +G +AV+ L+PD+V++D+ +P +N Sbjct: 26 IRVLIADDEGLVRAGFRALVEATPDLTVVAEAADGVAAVRESRRLRPDVVLMDIRMPVMN 85 Query: 60 GIQVLETLRKR--QYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAK 117 G++ + + I++V+ +D Y AGA GF+ K N++AAI Sbjct: 86 GLEATRLIAADAVRPGPGILVVTTFDDDEYVFEALRAGAAGFILKDTQPENLLAAIRTVA 145 Query: 118 NGYCYFPFSLNRFVGSLTSDQQKLDS---------LSKQEISVMRYILDGKDNNDIAEKM 168 G + R + + + L+ +E +V+ I +G N +IA+ + Sbjct: 146 AGDALLAPGVTRRLIAAFVRVPAPPASPLTGLASTLTDRERAVLTQIANGYSNAEIAQAL 205 Query: 169 FISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 ++S TV T+ L+ KL + L A + + Sbjct: 206 YVSVSTVKTHVGHLLAKLAARDRAQLVIAAYESGL 240 >UniRef50_Q485W6 DNA-binding response regulator n=3 Tax=Alteromonadales RepID=Q485W6_COLP3 Length = 215 Score = 262 bits (672), Expect = 4e-69, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 109/204 (53%), Gaps = 1/204 (0%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 ++ I+DDHP+ ++ L +DI I+ +G A+ + LKPD++++D+ +P +N Sbjct: 9 VSVQIVDDHPMVQGGLKACLSFYDDIIIVGSTDDGSDALNKAIELKPDVILMDISMPTMN 68 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI E + ++ ++I+S ++ + K AGA G++ K I AI+A NG Sbjct: 69 GIDATEIITEQLPETKVLILSMHSNPEFVKSAIQAGAVGYLLKDTTSEEIYYAIKAVANG 128 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 +F S+ + + + + + L+ +E V+ Y+ GK + +IA+ + IS +TV ++ Sbjct: 129 KTHFSSSIAKLLIDNPVNTNESEKLTTREQVVLSYLAKGKTSKEIAKILNISFRTVEAHR 188 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 + KL SL L ++A ++ I Sbjct: 189 RNMKTKLGIHSLAKLISYAVKHGI 212 >UniRef50_C9LUT0 DNA-binding response regulator UhpA n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LUT0_9FIRM Length = 216 Score = 262 bits (672), Expect = 5e-69, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 108/205 (52%), Gaps = 2/205 (0%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH + + LL + D ++AE ++G A+++ DI ++D+ +P + Sbjct: 8 LRILLADDHRVLRKGLSLLLSSEEDFSVVAEASDGEEALEKAAKTPVDIALLDLSMPHMG 67 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ L L+ Q + ++I++ ++ Y C AGANG++ K + A+ G Sbjct: 68 GLECLRRLKAMQPAVRVLILTMHSERQYVCECLRAGANGYLCKDTLDAELFRALRTVAAG 127 Query: 120 YCYFPFSLNRFVGS-LTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTY 178 Y + + ++ +LS +E V+ I+ G + IA+K+++S KTVSTY Sbjct: 128 GRYLGEREAELLIDGALEEPEEPAALSTREREVLELIVHGYSLSTIADKLYLSIKTVSTY 187 Query: 179 KSRLMEKLECKSLMDLYTFAQRNKI 203 K+RL++KL+C +L +A R+ I Sbjct: 188 KTRLLQKLDCTQNSELVDYALRHNI 212 >UniRef50_A7NP18 Two component transcriptional regulator, LuxR family n=12 Tax=Bacteria RepID=A7NP18_ROSCS Length = 222 Score = 262 bits (672), Expect = 5e-69, Method: Composition-based stats. Identities = 46/207 (22%), Positives = 93/207 (44%), Gaps = 4/207 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH + +R LL + I+ E + G + + L+PDIV++D+ +P ++ Sbjct: 6 IRILLADDHRMFRQGLRELLERKGGFIIVGEASTGREVLAQAAALRPDIVLLDIQMPEID 65 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ V L + +I+++ + AGA ++ K + +I IE G Sbjct: 66 GVAVARQLAQTHPDVKVIMLTMYRQDQHLFEAIKAGARAYLLKDADADELIDVIERVHRG 125 Query: 120 YCYFPFSLNRFVGSLTSD---QQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 ++ V Q + L+++E ++ + +G DN IA+++F+S KTV Sbjct: 126 EAALDPTVTLRVFDEFRRLSIDQDAEQLTERERDILTLLAEGHDNRTIAQRLFLSEKTVG 185 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKI 203 S + +KL + A + + Sbjct: 186 NRLSEIFQKLGVSNRTQAALVAVQRGL 212 >UniRef50_Q9RU37 DNA-binding response regulator n=3 Tax=Deinococci RepID=Q9RU37_DEIRA Length = 225 Score = 262 bits (671), Expect = 5e-69, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 100/205 (48%), Gaps = 1/205 (0%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH + +R L + IE++ E G A+Q E L+P++V++D+ +P ++ Sbjct: 14 VRVLLVDDHAVVRQGLRLFLGLDEGIEVVGEAANGEEALQEAERLRPEVVVMDLMMPVMD 73 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI LR+R +I +++ + +AGA ++ K + + AI AA G Sbjct: 74 GITATRELRRRLPDTEVIALTSTLEENKVNGAIEAGAISYMLKDASSDTLADAIHAAARG 133 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 R + + +SL+ +E +V++ + G+ N DIA + +S TV T+ Sbjct: 134 EVRLHPEAARRLVRDFRSPEMRESLTPKETAVLQLLARGQSNKDIAAEQGVSEATVKTHV 193 Query: 180 SRLMEKLECKSLMDLYTFAQRNKIG 204 SRL+ KL S +A + I Sbjct: 194 SRLLSKLGLDSRTQAALYALKYGIA 218 >UniRef50_D0LYS4 Two component transcriptional regulator, LuxR family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LYS4_HALO1 Length = 212 Score = 262 bits (671), Expect = 6e-69, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 110/207 (53%), Gaps = 5/207 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + I DDH L +R +L +++ IE++ E + G AV+ V+ PD++++D+ +P + Sbjct: 2 IKIAIADDHALLREGMRRMLSQSELIEVVGEASNGAEAVEVVKEKAPDVLLLDITMPVKD 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ + + I+I+S D Y AGANGF+SK + ++ AI G Sbjct: 62 GIEATADILALNVNTKILILSMHADEQYALRTLRAGANGFISKGARLEELLKAITDVHEG 121 Query: 120 YCYFPFSL----NRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 Y P + +++ +++LSK+E VM ++ G N +IA + IS KTV Sbjct: 122 QRYLPDKIATSFAERHIRPDAEKPLVETLSKREFQVMTHLAQGMTNREIAGVLQISVKTV 181 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNK 202 T++S +++KLE ++ D+ FA ++ Sbjct: 182 DTHRSHVLKKLELRNNSDITRFAIQHG 208 >UniRef50_Q09C30 Two-component system regulatory protein n=3 Tax=Proteobacteria RepID=Q09C30_STIAU Length = 213 Score = 262 bits (671), Expect = 6e-69, Method: Composition-based stats. Identities = 53/210 (25%), Positives = 96/210 (45%), Gaps = 8/210 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 +N +++DDH L IR+LL D+ ++ E ++G AV+RV L PD+V++DV +P + Sbjct: 2 INIVLVDDHALIREGIRSLLEFTPDLHVVGEASDGEEAVKRVRELSPDVVLMDVRMPRMT 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ L +R+ +++++ ++ AG GF+ K + + AI NG Sbjct: 62 GLEALRAMRREAPERRVVLLTTFDEDSVVVEALRAGVKGFLLKDVTRDQLADAIRRVANG 121 Query: 120 YCYFPFSLNRFVG-------SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 P + V + + L+++E+ VMR I G N +IA + + Sbjct: 122 ETLLPPGVAERVQRGFTEVPQEFPHAELPEGLTRRELEVMRLIARGLSNREIATVLGTAE 181 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNK 202 TV S ++ KL + A Sbjct: 182 GTVKNQTSNILAKLGVRDRTRAVLRAMELG 211 >UniRef50_A8VTE0 Response regulator receiver protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VTE0_9BACI Length = 219 Score = 261 bits (670), Expect = 7e-69, Method: Composition-based stats. Identities = 62/211 (29%), Positives = 119/211 (56%), Gaps = 9/211 (4%) Query: 2 NAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 +++DDHP+ + ++++L + D ++AE +G SA++ PDI+I+D+ +PG++G Sbjct: 4 RIMLVDDHPVFRSGLKHILCTEADYHVIAEADDGESAIEMAAEANPDIIIMDISMPGLDG 63 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 I+V ++++ I++++ D + K DAGA+G+V K+ ++ A++ NG Sbjct: 64 IEVTREIKRKIPDIRILMLTMYADEAFLKESLDAGASGYVLKRAVDTELVHAVKLVMNGE 123 Query: 121 CYFPFSLNRFV--------GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 Y +L + +++ D + LS++E V++YI G +I+ ++FIS Sbjct: 124 HYIYPTLIPKLYHANQPQQDAVSPDSNQAVELSQREQEVLKYIALGYTQKEISTELFISI 183 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 KTV TYK R+MEK+ K L +A ++ I Sbjct: 184 KTVDTYKKRVMEKIGSKKKSALVRYALKHNI 214 >UniRef50_C6J7D2 Response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J7D2_9BACL Length = 227 Score = 261 bits (670), Expect = 7e-69, Method: Composition-based stats. Identities = 55/210 (26%), Positives = 104/210 (49%), Gaps = 8/210 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRV----ETLKPDIVIIDVDI 55 + +I+DDH + ++ L++ E++AE +G AV+ + +PDI+++D+ + Sbjct: 13 IKVMIVDDHDMVRMGLKTYLMQDPGFEVIAEAGDGREAVELLERGLREGQPDIILMDLMM 72 Query: 56 PGVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEA 115 PG+NG + + +R R I+I+++ + +AGA +V K +I A++ Sbjct: 73 PGMNGAEATKEVRSRFPDMKIVILTSFLEDDLVVQAVEAGAVSYVLKTVSAEELIYALQG 132 Query: 116 AKNGYCYFPFSLNRFVGSLTSDQ---QKLDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 A G + + + + ++++E V+ I +GK N DIAE++ IS Sbjct: 133 AYRGMPVMTGEVAQALTRGLRQRTVQGDDSGMTEREKEVLLLIAEGKSNKDIAEELHISI 192 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNK 202 KTV T+ S L+ K E + L +A R Sbjct: 193 KTVKTHVSNLLMKCELEDRTQLAIYAHRQG 222 >UniRef50_A4XCA4 Response regulator receiver n=3 Tax=Actinomycetales RepID=A4XCA4_SALTO Length = 235 Score = 261 bits (670), Expect = 8e-69, Method: Composition-based stats. Identities = 52/213 (24%), Positives = 111/213 (52%), Gaps = 9/213 (4%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DD PL +A+R ++ + +D+ I E G AV+ LKPD+V++D+ +PG+ Sbjct: 3 IEVLVVDDQPLVRSALRMVVAEVDDMVIAGEAETGEEAVRLTRELKPDVVLMDLRMPGMG 62 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ + + +++++ ++ + AGA GF+ K +++I+ A+ +G Sbjct: 63 GIEATGQIVRLSPETRVLVLTTFDEDDHVFGALQAGAAGFLIKNMSLDDILDAVRTVAHG 122 Query: 120 YCYFPFSLNRFVG--------SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFIS 171 S+ R + + T ++ L ++++E V+ + G N++IA+++ +S Sbjct: 123 NGLLAPSVTRRLIKHVVDTRTAPTVPRRPLSGITEREREVLTLVGRGLSNSEIADELRLS 182 Query: 172 NKTVSTYKSRLMEKLECKSLMDLYTFAQRNKIG 204 + TV TY +RL+ KL + + L A + Sbjct: 183 HATVKTYITRLLSKLGARDRVHLVIAAYEAGLA 215 >UniRef50_C3BET8 Putative uncharacterized protein n=15 Tax=Bacillus RepID=C3BET8_9BACI Length = 216 Score = 261 bits (669), Expect = 8e-69, Method: Composition-based stats. Identities = 55/212 (25%), Positives = 108/212 (50%), Gaps = 12/212 (5%) Query: 4 IIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +I+DD L + LL ++++E++ +G V+ E L+P+I+++D+ +P +NG++ Sbjct: 1 MIVDDQSLIRDGLAMLLNLRSELEVVGTANDGDEVVRIAEQLQPEIILMDIRMPRINGVE 60 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 +R+R +++++ ND + GA+G++ K + I+ AI G Sbjct: 61 GTRLIRERFPDMKVLMLTTFNDSELIFEALEQGASGYLLKDMETDAIVQAILTVHAGGAV 120 Query: 123 FPFSLNRFV-----------GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFIS 171 P + + S + ++++ L+++EI V+R I G +N +IAEK+FI+ Sbjct: 121 LPQDITAQIVKELKRTKVVEISGQNQPKQVEQLTEREIDVLREIGLGLNNKEIAEKLFIT 180 Query: 172 NKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TV + S L+ KLE + +A R I Sbjct: 181 EGTVKNHVSNLISKLELRDRTQAAIYAVRYGI 212 >UniRef50_Q51373 Response regulator gacA n=50 Tax=Gammaproteobacteria RepID=GACA_PSEAE Length = 214 Score = 261 bits (669), Expect = 1e-68, Method: Composition-based stats. Identities = 53/208 (25%), Positives = 103/208 (49%), Gaps = 5/208 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH L I +L ++++ + G ++ LKPD+V++DV +PG+ Sbjct: 2 IKVLVVDDHDLVRTGITRMLADIEGLQVVGQADCGEDCLKLARELKPDVVLMDVKMPGIG 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ L + Q +++V+ + + AGA G+++K G+ ++ AI G Sbjct: 62 GLEATRKLLRSQPDIKVVVVTVCEEDPFPTRLMQAGAAGYMTKGAGLEEMVQAIRQVFAG 121 Query: 120 YCYFPFSLNRFVG----SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 Y + + + DSLS++EI + I + I++K+ +S KTV Sbjct: 122 QRYISPQIAQQLALKSFQPQQHDSPFDSLSEREIQIALMIANCHKVQSISDKLCLSPKTV 181 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKI 203 +TY+ R+ EKL S ++L A R+ + Sbjct: 182 NTYRYRIFEKLSITSDVELALLAVRHGM 209 >UniRef50_B8G137 Two component transcriptional regulator, LuxR family n=3 Tax=Desulfitobacterium hafniense RepID=B8G137_DESHD Length = 217 Score = 261 bits (669), Expect = 1e-68, Method: Composition-based stats. Identities = 66/212 (31%), Positives = 115/212 (54%), Gaps = 9/212 (4%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH + A ++ LL + D+E++ E ++G A+ RV+ L PD+V++D+ +P +N Sbjct: 5 LRIVLADDHAVLRAGLKVLLNAEPDLEVIGEASDGEEAIDRVDDLHPDLVLLDLTMPKLN 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ +E L K+ I++++ +D Y K GA G+V KK +++AI G Sbjct: 65 GVDCIEELLKKHADLKILVLTMHDDEEYLKAVLQVGAKGYVLKKAADVELLSAIRTVARG 124 Query: 120 YCYFPFSLNRFV--------GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFIS 171 + ++ + +KL LS++E+ V+R + G N DIA+ + +S Sbjct: 125 EMFIYPTMAAEFVYRHLVSPREPEKESKKLKQLSERELEVLRNLALGHTNQDIADLLHVS 184 Query: 172 NKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 KTV TYK+R+MEKLE +L +A N I Sbjct: 185 VKTVETYKARVMEKLEMHKRAELVRYAMENGI 216 >UniRef50_Q15T22 Two component transcriptional regulator, LuxR family n=4 Tax=Alteromonadales RepID=Q15T22_PSEA6 Length = 214 Score = 261 bits (668), Expect = 1e-68, Method: Composition-based stats. Identities = 53/207 (25%), Positives = 102/207 (49%), Gaps = 4/207 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH L IR +L ++ E T G AV+ PD+V++D+ +PG+ Sbjct: 2 IKILLVDDHELVRTGIRRILEDVQGFVVVGEATTGEEAVKFCRKNAPDLVLMDMSMPGIG 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + + + + +I++S ++ GA G+++K + AI G Sbjct: 62 GLEATKQILRFSENTRVIVLSVHKENPIPAKVMRMGAFGYLTKDSDPKEMELAIRKVAAG 121 Query: 120 YCYFPFSLNRFV---GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 Y + + + SD +SLS++E+ + + G DIA+ + IS KTV+ Sbjct: 122 QKYVSPDIAQQIAIGALDFSDGNPFESLSERELEITLMLTKGSKVPDIAKFLNISAKTVN 181 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKI 203 T++ R+ EKL + ++L A R+K+ Sbjct: 182 THRYRMFEKLNVSTDVELTHLALRHKL 208 >UniRef50_A5G586 Two component transcriptional regulator, LuxR family n=8 Tax=Bacteria RepID=A5G586_GEOUR Length = 226 Score = 261 bits (668), Expect = 1e-68, Method: Composition-based stats. Identities = 52/210 (24%), Positives = 103/210 (49%), Gaps = 7/210 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH + ++ +L ++ IE++AE G A+++ + L PD+V++D+ +P +N Sbjct: 13 IRVLLVDDHKIMRKGLKAILALEHTIEVVAEAANGREAIRKADELLPDVVVMDLTMPEMN 72 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ + + +++S D AGA G++ K + ++ AI +G Sbjct: 73 GIEAIRQIVAAHPDVRTLVLSMVLDRACVMETFKAGATGYLLKDCAVEELVGAIHTVASG 132 Query: 120 YCYFPFSLNRFV------GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 Y + V G+ + LSK+E V++ I +G +IA +S K Sbjct: 133 EPYLCPQITSLVIRDYTKGADANSSDSCVQLSKREREVLQLIANGNSTKEIAFTFGVSIK 192 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TV+ + +M+KL ++ DL +A R + Sbjct: 193 TVAVQRMSVMKKLNLFNVADLTKYAVREGL 222 >UniRef50_B1ZVM0 Two component transcriptional regulator, LuxR family n=5 Tax=Bacteria RepID=B1ZVM0_OPITP Length = 219 Score = 261 bits (668), Expect = 1e-68, Method: Composition-based stats. Identities = 54/210 (25%), Positives = 98/210 (46%), Gaps = 7/210 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH L A IR LL K + I+ E +G V V T PDI I+D+ +PG+N Sbjct: 5 LKIVLADDHALVRAGIRTLLEKLPGVTIVGEAGDGRETVTLVHTFAPDIAIMDITMPGLN 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G + + ++I+S Y AGA G++ K + A+ A + G Sbjct: 65 GFDATARIAREHPRTKVLILSMHTAEDYVLQALRAGATGYLLKDAATAELQLALNAVRKG 124 Query: 120 YCYFPFSLNRFVGSLTSDQ------QKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 Y S+++ V + Q + +L+ + +++ I +G+ +IA + +S K Sbjct: 125 ETYLSPSISKSVLARFRQQEQDPRAEPTKALTPRMREIVQLIAEGRSTKEIAFLLNLSVK 184 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 T+ T++ LM +L + + +A R + Sbjct: 185 TIETHRMHLMARLGLHDVAGVVRYALRTGL 214 >UniRef50_P0C0Z1 Response regulator protein vraR n=123 Tax=Firmicutes RepID=VRAR_STAA1 Length = 209 Score = 260 bits (667), Expect = 2e-68, Method: Composition-based stats. Identities = 44/205 (21%), Positives = 101/205 (49%), Gaps = 2/205 (0%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + + +DDH + I + L ++DIE++ E G A+ + LKPD++++D+ + ++ Sbjct: 3 IKVLFVDDHEMVRIGISSYLSTQSDIEVVGEGASGKEAIAKAHELKPDLILMDLLMEDMD 62 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ ++K ++++++ + DAG + ++ K +I A+ G Sbjct: 63 GVEATTQIKKDLPQIKVLMLTSFIEDKEVYRALDAGVDSYILKTTSAKDIADAVRKTSRG 122 Query: 120 YCYFPFSLNRFVGSLTSDQQKL-DSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTY 178 F + + + + +L + L+++E+ ++ I G N +IA I+ KTV T+ Sbjct: 123 ESVFEPEVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTH 182 Query: 179 KSRLMEKLECKSLMDLYTFAQRNKI 203 S ++ KLE + +A ++ + Sbjct: 183 VSNILSKLEVQDRTQAVIYAFQHNL 207 >UniRef50_A9WA66 Response regulator receiver n=2 Tax=Chloroflexus RepID=A9WA66_CHLAA Length = 218 Score = 260 bits (667), Expect = 2e-68, Method: Composition-based stats. Identities = 46/214 (21%), Positives = 92/214 (42%), Gaps = 13/214 (6%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I+DD L I LL + DIE++ + G A++ V +L PD+V++DV +P ++ Sbjct: 3 IRVLIVDDQALIRTGIATLLSRKADIEVVGQAGNGREALELVASLDPDVVLMDVMMPVMD 62 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ L +R +I+++ +D AGA G++ K + +I G Sbjct: 63 GVEATRKLAERGPRPAVIMLTTFHDDERVLQSIAAGARGYLLKDVDHRVLADSIRTVAGG 122 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDS------------LSKQEISVMRYILDGKDNNDIAEK 167 + + + L+ +E ++R + G N +I E+ Sbjct: 123 GALIHPQIIAQLLPRLASLAPTPVTASSSPSDVTSILTPRERDILRLLAQGYTNQEIGEQ 182 Query: 168 MFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRN 201 + +S TV + S + KL + +A+ + Sbjct: 183 LALSVGTVKNHLSVIFAKLAVRDRTQAALWAREH 216 >UniRef50_C1A9U5 NarL family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A9U5_GEMAT Length = 223 Score = 260 bits (666), Expect = 2e-68, Method: Composition-based stats. Identities = 56/209 (26%), Positives = 100/209 (47%), Gaps = 6/209 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I DDH L +R +L IE++ E + G +AV PD+V++D+ +P + Sbjct: 11 IRVLIADDHALVREGLRYVLDADPGIEVVGEASNGRTAVDLALQHVPDVVVLDITMPEES 70 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ LR+ ++++S + Y + G +G++ K + AAI A G Sbjct: 71 GLKAAARLREALPDTRVLLLSMHDQGEYVREGMRIGTHGYLLKDSAGEELRAAIRAVHAG 130 Query: 120 YCYFPFSLNRFVGSLT-----SDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 +F ++ R + S + +LD L+ +E V+ + G N IA ++ IS +T Sbjct: 131 GTFFSPAVVRRLTSTEVVSEGAPAAQLDLLTPRERDVLAGVARGLTNKAIAAELGISRRT 190 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 V ++ LM KL+ S+ L FA I Sbjct: 191 VEAHRESLMRKLQIHSVAGLTRFALETGI 219 >UniRef50_A9AZR3 Two component transcriptional regulator, LuxR family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AZR3_HERA2 Length = 213 Score = 260 bits (666), Expect = 2e-68, Method: Composition-based stats. Identities = 50/204 (24%), Positives = 101/204 (49%), Gaps = 2/204 (0%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH + +R LL ++ + I+ E G A++ ++P ++++D+ +P V+ Sbjct: 5 IRIMLVDDHAIVREGLRTLLAEDTEFLIVGEAQNGADAIELAAVVRPHVILMDLVMPNVD 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GIQ + L+ S II++++ +D + AGA+G++ K + AI NG Sbjct: 65 GIQATQALQSLMPSSRIIVLTSFSDDQWVSKAIQAGASGYLLKNVLKAELFLAIRTVANG 124 Query: 120 YCYFPFSLNRFVGSLTSDQQK-LDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTY 178 + R + ++ L SL+++E SV+ I+ G N +IA + ++ TV Y Sbjct: 125 QPFLHAEAQRTLMRQSTAPPSLLPSLTERERSVLDGIVGGLSNKEIARSLHLTEGTVKGY 184 Query: 179 KSRLMEKLECKSLMDLYTFAQRNK 202 S ++ KL +A ++ Sbjct: 185 VSTILTKLAVADRTQAALYAIKHG 208 >UniRef50_A1SGL7 Response regulator receiver n=1 Tax=Nocardioides sp. JS614 RepID=A1SGL7_NOCSJ Length = 213 Score = 260 bits (666), Expect = 2e-68, Method: Composition-based stats. Identities = 47/208 (22%), Positives = 101/208 (48%), Gaps = 8/208 (3%) Query: 4 IIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +++DD L + LL + IE++ E +G T PD+V++D+ +P +GI+ Sbjct: 2 LVVDDQELFRRGLTMLLGTEAGIEVVGEAGDGVEGTNLAATAAPDVVLLDIRMPKRSGIE 61 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 +++ S II+++ ++ +GA+G++ K + + A+ +G Sbjct: 62 ACLAIKEAVPSAKIIMLTVSDEEADLYEAVKSGASGYLLKDSSIEEVAQAVRVVADGQSL 121 Query: 123 FPFSLNRFVGSLTSDQQKLD-------SLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 S+ + + + L+++E+ V+R + G +N +IA+++FIS TV Sbjct: 122 ISPSMAVKLIDEFKQMSRPERDHVPGLRLTERELEVLRLVAKGMNNREIAKELFISENTV 181 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKI 203 + ++EKL+ S M+ +A + K+ Sbjct: 182 KNHVRNILEKLQLHSRMEAVMYAVKEKL 209 >UniRef50_C0WKL5 Response regulator n=6 Tax=Corynebacterium RepID=C0WKL5_9CORY Length = 253 Score = 260 bits (666), Expect = 2e-68, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 93/231 (40%), Gaps = 28/231 (12%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++DD PL A L+ + D+ ++ + ++G + DI+++DV + VN Sbjct: 11 IRIALVDDQPLLRAGFAMLIGSQEDMSVVWQASDGDEVLDLARQEPVDIILMDVQMARVN 70 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI E + +I+++ +DH + AGA+GF+ K +++AI +G Sbjct: 71 GIAATEEVLPEFPDTKVIMLTTFDDHNFVHGAISAGASGFLLKDVEPEELLSAIRTVHSG 130 Query: 120 YCYFPFSLNRFVGSLTSDQ---------------------------QKLDSLSKQEISVM 152 + V + L+ +E+ ++ Sbjct: 131 EAVLSPRITAQVLQQVRSEEGGDSRKAHSASHTAAAAQPGATTATAPPSAELTPREMDIL 190 Query: 153 RYILDGKDNNDIAEKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 R + G N +I+E+ F+S TV T+ ++ K + + +A + + Sbjct: 191 RLMALGYSNTEISEEEFVSMATVKTHVRHVLTKTGSRDRVQAVLYAYTHGV 241 >UniRef50_Q313W8 Two component transcriptional regulator, LuxR family n=3 Tax=Proteobacteria RepID=Q313W8_DESDG Length = 223 Score = 260 bits (665), Expect = 3e-68, Method: Composition-based stats. Identities = 53/210 (25%), Positives = 102/210 (48%), Gaps = 8/210 (3%) Query: 2 NAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 + II +DH L +++LL + + E ++G AV + +P++V++D+ +P ++G Sbjct: 6 SLIIAEDHTLLREGLKSLLQSVPHLIVTGEASDGQMAVDLCDRNQPELVLMDISMPRMDG 65 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 +Q ++KR +++++ Y AGA+G+V K + I A+E+ G Sbjct: 66 VQATRLIKKRHPEVRVLVLTVHGAGEYVYAALAAGADGYVLKDASNDEFILAVESVLGGK 125 Query: 121 CYFPFSLNRFV-------GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 Y ++ V S ++L+ +E + + + +G N +IAE + +S K Sbjct: 126 IYLSPGVSDAVVKGYLNDARGQSVSSSWETLTPREQEIFQLVAEGYKNREIAEMLVVSVK 185 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TV ++S LM+KL S +L A I Sbjct: 186 TVEKHRSNLMQKLGVHSAAELRALALERGI 215 >UniRef50_Q3Z8L1 DNA-binding response regulator, LuxR family n=6 Tax=Bacteria RepID=Q3Z8L1_DEHE1 Length = 224 Score = 259 bits (664), Expect = 4e-68, Method: Composition-based stats. Identities = 51/210 (24%), Positives = 105/210 (50%), Gaps = 8/210 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH + R L+ ++ + ++ E ++G AV+ + PD+V++D+ +P +N Sbjct: 7 IKVLLADDHVIVREGTRELIQRESGMMVVGEASDGVEAVEMSMKVHPDVVVMDIAMPRLN 66 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ + +++ + I+I++A Y +AGA F+ K ++ AI A G Sbjct: 67 GIEATKQIKQLLPTTAILILTAYESEQYILAILEAGAASFLLKNVKGTQLLEAIRAVYAG 126 Query: 120 YCYFPFSLNRFV-------GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 S R V + T + ++ L+ +EI V++ G N DIA+++++SN Sbjct: 127 ESVLQPSTTRRVIDQLINKATKTEEVSAVNPLTDREIEVLKMAARGVSNKDIADQLYLSN 186 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNK 202 +T+ T+ S + +KL S + + + Sbjct: 187 RTIQTHLSNIFKKLSVGSRTEAILYGLKRG 216 >UniRef50_B9QSJ5 Response regulator receiver domain protein n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9QSJ5_9RHOB Length = 212 Score = 259 bits (664), Expect = 4e-68, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 105/206 (50%), Gaps = 3/206 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH L IR L K +IE++ E T G AV+ L+PD++++DV +P +N Sbjct: 5 IRVLLADDHALVRDGIRARLNKVPEIEVVGEATNGREAVKLAHELRPDVLLMDVSMPVMN 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ +RK ++I+S ++ Y + AGA G++ K +I AI + +G Sbjct: 65 GLEAAAEVRKSFPEIAVLILSIYDNSEYVRGVVQAGARGYILKDISAPEMITAISSVASG 124 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDS--LSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 YF ++ + + D L+ +E V+ I G N ++A+ + IS +TV + Sbjct: 125 GYYFSSAVGPTLVGTATSAPIEDPYGLTDRERQVLTAIAKGLPNKEVAKSLGISVRTVES 184 Query: 178 YKSRLMEKLECKSLMDLYTFAQRNKI 203 ++ L EK+ K+ LY AQ + Sbjct: 185 HRLNLREKVGNKNAAQLYKVAQDLGL 210 >UniRef50_B1KE04 Two component transcriptional regulator, LuxR family n=2 Tax=Alteromonadales RepID=B1KE04_SHEWM Length = 206 Score = 259 bits (663), Expect = 4e-68, Method: Composition-based stats. Identities = 50/204 (24%), Positives = 102/204 (50%), Gaps = 1/204 (0%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 M I+DDHP+ + L +D I+ + G A++++ L PDIV++D+ +P +N Sbjct: 1 MRIFIVDDHPIFREGLIARLSMDDDFVIVGQAANGKEALEKMPNLMPDIVLMDISMPEMN 60 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ E + + I+I+S +D Y + G G+ K + A+ NG Sbjct: 61 GMDAAEIFKDKFPEIKILILSMHDDKEYVLSVLNRGVRGYALKDISAAEMFYALRVIHNG 120 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 Y+ +++ + + + K L+ +E +V+R + G +N ++A ++ IS +T+ T++ Sbjct: 121 GIYYSRAISDLLVQSSQEPDKNTVLTTREQTVLRLLASGLNNKELARELDISVRTIETHR 180 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 + +KL K+ L +A + + Sbjct: 181 RNIKDKLAIKTSAGLVRYAIDHGL 204 >UniRef50_Q11VH7 Response regulator n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11VH7_CYTH3 Length = 220 Score = 259 bits (663), Expect = 5e-68, Method: Composition-based stats. Identities = 60/216 (27%), Positives = 116/216 (53%), Gaps = 13/216 (6%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 +N +++DDH + I+ L + + I+ E G ++ V+ LKPD+VI+D+ +P ++ Sbjct: 4 INILLVDDHTIVRDGIKATLKDQKNFHIVGEAANGLDGIEAVKQLKPDVVIMDITMPEMS 63 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ + + K+ ++I+S ++ Y +AGA G++ K + I AI A NG Sbjct: 64 GIEAADVISKKYPDSKVLILSMHDNETYILKSVEAGAYGYLLKDVDKDEFIKAITAVYNG 123 Query: 120 YCYFPFSLNRFVGS------------LTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEK 167 YF +++ + S + L+K+E +++ I DGK+N +IA+ Sbjct: 124 DKYFNTAISSVLVSGYLSKVKQTDSIQSGYSNDEYELTKREKGILKMITDGKNNREIADG 183 Query: 168 MFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 + IS +T+ T+++ +M+KL+ K+ ++L A KI Sbjct: 184 LGISIRTIETHRANIMKKLKVKNAVELVRIAIDEKI 219 >UniRef50_D1CI66 Two component transcriptional regulator, LuxR family n=3 Tax=Bacteria RepID=D1CI66_THET1 Length = 218 Score = 258 bits (662), Expect = 6e-68, Method: Composition-based stats. Identities = 47/209 (22%), Positives = 102/209 (48%), Gaps = 6/209 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 M +I DDH L ++R LL +E++ E G AV+ L+PD+V++D+ +PG++G Sbjct: 1 MRVLIADDHALFRDSLRTLLEARGVEVVGEAETGKEAVELARELRPDVVLMDLKMPGMDG 60 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 + + +++++A D +GA G++ K + +EAA G Sbjct: 61 LAATRMISAEMPEVKVVVLTASEDDEDLFEAVKSGALGYMFKDVRSDQFFELLEAASRGE 120 Query: 121 CYFPFSLNRFVGSLT-----SDQQKLDSLSKQEISVMRYILDGK-DNNDIAEKMFISNKT 174 F L R + +++ + L+++E ++ ++ G N ++AE++ +S T Sbjct: 121 PAFTPGLARKLLREMSKPAGRAEREPEVLTEREQEILELLVQGVTSNKELAERLILSENT 180 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 V + +++KL ++ + +A ++ + Sbjct: 181 VKYHLRNILDKLHLQNRTQVVAYALQHGL 209 >UniRef50_B8CZJ8 Two component transcriptional regulator, LuxR family n=1 Tax=Halothermothrix orenii H 168 RepID=B8CZJ8_HALOH Length = 209 Score = 258 bits (662), Expect = 6e-68, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 105/205 (51%), Gaps = 2/205 (0%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++DDHP + ++ L + IEI+ G A++ + L P++ ++D+ +PG+N Sbjct: 2 IQVYLVDDHPFVLQGLKAYLNTREGIEIVGTSGNGEKAIKEIAKLNPEVAVVDLRLPGLN 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+V ++K+ +II+S+ N DAGA +V K ++ AI+AA+ G Sbjct: 62 GIEVTREIKKKNPGTEVIILSSFNKEDEVIEAIDAGALSYVMKDSRPEKLVEAIKAARRG 121 Query: 120 YCYFPFSLNRFVGSLTSDQ-QKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTY 178 + + + + + +K + L+ +E V+ ++ G N DIA+ + IS TV T+ Sbjct: 122 EPVLTPGVAKKIMKRAARKGRKTEPLTPREKEVLACLVRGNSNRDIAKTLCISETTVKTH 181 Query: 179 KSRLMEKLECKSLMDLYTFAQRNKI 203 S +++KL+ K A N + Sbjct: 182 VSNILKKLDVKDRTQAVIKAIENNL 206 >UniRef50_Q1H354 Two component transcriptional regulator, LuxR family n=4 Tax=Proteobacteria RepID=Q1H354_METFK Length = 213 Score = 258 bits (662), Expect = 6e-68, Method: Composition-based stats. Identities = 54/206 (26%), Positives = 104/206 (50%), Gaps = 3/206 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH + + +R LL +ND +E++AE G A Q PD++++D+ +PG+ Sbjct: 5 IRIMLVDDHEVVRSGLRRLLEQNDGVEVIAEADSGEQAYQFYGEHMPDVIVMDMSMPGMG 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ L + R +II S + + AGA +V+K ++++ A+ G Sbjct: 65 GLEALRRIIARYPQARVIIFSMHENAAFASQALGAGARAYVAKSGAADDLVQAVREVAQG 124 Query: 120 YCYFPFSLNRFVG--SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 Y + + + +L+ LS +E V R + GK +I+ + IS KTV+ Sbjct: 125 KGYLSPGIAQQIALQTLSGSDDPTRLLSAREFEVFRLLAAGKGVEEISTILKISQKTVAN 184 Query: 178 YKSRLMEKLECKSLMDLYTFAQRNKI 203 Y++ L +KL S ++L A ++ + Sbjct: 185 YQTLLKQKLGITSPIELVRLAIKHGV 210 >UniRef50_B0MVU6 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MVU6_9BACT Length = 216 Score = 258 bits (662), Expect = 6e-68, Method: Composition-based stats. Identities = 58/208 (27%), Positives = 104/208 (50%), Gaps = 6/208 (2%) Query: 2 NAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 I++DDH L + +R LL + + I ++ E + G + + + D+V +D +PG+NG Sbjct: 5 RIILVDDHSLFRSGMRGLLDRYDGIRVVGEASTGEEFLAMLPATEADVVFMDFAMPGMNG 64 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 + E + +I +S D Y AGA GF+ K M+ ++ AIE G Sbjct: 65 AETTEKALALEPGLKVITLSMFGDENYYSRMVQAGAKGFLMKDSPMDEVLRAIETVAAGG 124 Query: 121 CYFPFSLNRFVGSLTSD-----QQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 YF + R + S + + LS +EI ++ + G N +IA+++FIS +TV Sbjct: 125 TYFCEEVLRSLASRMQTAVSGYEGSDERLSTREIEILVCVCRGLSNQEIADELFISKRTV 184 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKI 203 +++ ++EK CK+ L +A R+ + Sbjct: 185 DKHRANILEKTGCKNTASLVVYAVRHGL 212 >UniRef50_C7MLQ9 Response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein n=29 Tax=Actinobacteria (class) RepID=C7MLQ9_CRYCD Length = 261 Score = 258 bits (661), Expect = 7e-68, Method: Composition-based stats. Identities = 46/212 (21%), Positives = 95/212 (44%), Gaps = 11/212 (5%) Query: 3 AIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGI 61 +I+DD L + +L + + ++ E + G A ++ L+P +V++D+ +P +GI Sbjct: 45 VLIVDDQDLVRNGFKLILSSYDHVRVVGEASNGIEAYEQSLALRPQVVLMDIRMPVEDGI 104 Query: 62 QVLETLR--KRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 + +++++ + Y AGA+GF+ K ++I+ A+ G Sbjct: 105 AATRKIVGDTALAQTRVLVLTTFDIDEYVYDALQAGASGFMLKDAEPDDIVRAVRTVAAG 164 Query: 120 YCYFPFSLNRFVGSLTSDQQK--------LDSLSKQEISVMRYILDGKDNNDIAEKMFIS 171 S+ R + + L L+ +E ++R++ G N +IA+ + IS Sbjct: 165 DALIQPSITRRLIETFVSSRPRTSAAAGGLVDLTDREREILRFVARGMSNEEIADDLVIS 224 Query: 172 NKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TV T+ +R+M KL+ L A + + Sbjct: 225 PATVKTHLARIMGKLDAHDRAQLVVAAYESGL 256 >UniRef50_C4V5Y3 Response regulator n=3 Tax=Selenomonas RepID=C4V5Y3_9FIRM Length = 223 Score = 258 bits (661), Expect = 8e-68, Method: Composition-based stats. Identities = 55/217 (25%), Positives = 104/217 (47%), Gaps = 14/217 (6%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH L I+ +L ++D+E++ E +G A+ R LKPDI+++D+++PG+ Sbjct: 3 IRILLADDHALLRQGIKRVLNFEDDLEVVGEAEDGQEALARTLMLKPDILLLDINMPGLT 62 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ V + L++ + II ++ + Y GA G++ K N +I AI G Sbjct: 63 GLDVAKQLKQARSRVKIIALTIHDSDNYVLELLKNGALGYLLKDVEPNVLIKAIHMVNEG 122 Query: 120 YCYFPFSLNRFVGSLTS-------------DQQKLDSLSKQEISVMRYILDGKDNNDIAE 166 + L + +S D+ + + L+ +E+ V+ I G N DI + Sbjct: 123 NPFVYPKLAERLFGTSSISGDVGRMAKEIWDESRGERLTPREMDVLGCIAKGLSNQDIGK 182 Query: 167 KMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 + +S KTV + + + KL+ + +NKI Sbjct: 183 ALGLSEKTVKNHLTSVFHKLKVNDRTQALVYVLKNKI 219 >UniRef50_C5RGJ7 Two component transcriptional regulator, LuxR family n=2 Tax=Clostridium RepID=C5RGJ7_CLOCL Length = 220 Score = 258 bits (661), Expect = 8e-68, Method: Composition-based stats. Identities = 56/218 (25%), Positives = 103/218 (47%), Gaps = 15/218 (6%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 +N II DD + I+ +L ++I ++ E G + ++ D++++DV +P ++ Sbjct: 2 INVIIADDQKIVREGIKMILSLYDEINVIGEAENGEELINLLQNFMADVILMDVRMPIID 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + +++R +II++ N+ Y GA+G++ K G II AI + NG Sbjct: 62 GVEATKIIKERYIHTKVIILTTFNEDEYIFKAIKNGADGYLLKDVGSEFIINAIRSVYNG 121 Query: 120 YCYFPFSLNRFVGSLTSD--------------QQKLDSLSKQEISVMRYILDGKDNNDIA 165 + V + KL+SL+ +EI V + + GK N DI Sbjct: 122 AMLLDPEVTVKVVKAFNSITNESKNSNEFDNINNKLNSLTPREIDVAKLVAQGKSNKDIC 181 Query: 166 EKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 +F++ TV Y +R++ KLE S +L F + I Sbjct: 182 RSLFLTEGTVKNYVTRILGKLELNSRTELAVFINQAGI 219 >UniRef50_A1WBJ7 Two component transcriptional regulator, LuxR family n=30 Tax=root RepID=A1WBJ7_ACISJ Length = 239 Score = 258 bits (661), Expect = 8e-68, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 109/207 (52%), Gaps = 4/207 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + I+DDH + A +R L ++ D+ ++ E + G A+ V + D++++D+ +PG + Sbjct: 31 IKIGIVDDHAIVRAGLRQFLSEHVDLRVVGEASNGREAIDLVRVHEIDVLVMDLSMPGQS 90 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ L LR + I+I+S + Y + GA+G+++K+ I+ AI G Sbjct: 91 GLDALAMLRAKAPDMGILILSGYPEEHYAINLIRQGASGYLNKECEPKEIVEAIRTIALG 150 Query: 120 YCYFPFSLNRFVGSLTS---DQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 Y S+ + + D + LS++E V + G+ DIA+ + +S KTVS Sbjct: 151 RRYLTPSVADLLAQQLNRKDDAPPHEQLSEREFQVFLKLAKGETAGDIAKSLSLSVKTVS 210 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKI 203 TY++RLMEK+ S DL +A +NK+ Sbjct: 211 TYRTRLMEKMGLSSNSDLTYYALKNKL 237 >UniRef50_Q04VJ6 Receiver component of a two-component response regulator n=4 Tax=Leptospira RepID=Q04VJ6_LEPBJ Length = 221 Score = 258 bits (660), Expect = 9e-68, Method: Composition-based stats. Identities = 55/213 (25%), Positives = 104/213 (48%), Gaps = 12/213 (5%) Query: 2 NAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGI 61 ++DDH + ++ +L EI E + A+ ++ L PD+VI D+ +PG++GI Sbjct: 7 KIFLVDDHAILREGLKMILSGQ-FEICGESGDAEKALDQIGKLNPDLVITDISMPGLSGI 65 Query: 62 QVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 121 +++ LRK+ + II+S ++ Y + + G NG+V K + N+++ AIEA G Sbjct: 66 DLVKNLRKQYPNIRTIILSRHDNREYVQKLLELGINGYVLKDDAGNDLLRAIEAVHKGET 125 Query: 122 YFPFSLNRFVGSLT-----------SDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFI 170 Y + S ++ LS +E +++ + +G N I + + I Sbjct: 126 YLSPGITAHFLSGFVGSGKPGEENQDAKKAFSVLSDREREILKLVAEGNSNESIGKILGI 185 Query: 171 SNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 S TV +++ +M+KL + DL +A R + Sbjct: 186 SPATVKVHRANIMKKLNLHKVADLVMYAIRAGL 218 >UniRef50_A8L9Z7 Two component transcriptional regulator, LuxR family n=2 Tax=Frankia sp. EAN1pec RepID=A8L9Z7_FRASN Length = 218 Score = 258 bits (660), Expect = 1e-67, Method: Composition-based stats. Identities = 45/209 (21%), Positives = 95/209 (45%), Gaps = 5/209 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH L + + L+ + + ++ E T G AV T PD+V++D+++PG+ Sbjct: 8 IRVLLADDHRLVLDGLSALIDSVDGLTVVGEATSGEQAVDLAGTEHPDVVLMDIEMPGIG 67 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + Q + +++++ + + AGA G++ K +++ I A G Sbjct: 68 GVEATRRITTAQPTIAVVMLTMYGEDEFVFAALRAGARGYLLKGAQQKDVVRTIGAVARG 127 Query: 120 YCYFPFSLNRFVGSLTSDQQ----KLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 F + V + L+++E V+ + +G N+ IA + ++ KTV Sbjct: 128 DAVFGPDVAHRVLRTFTSPPAENAPFPELTEREREVLSLLANGWPNSRIARHLQLTPKTV 187 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKIG 204 + S ++ KL A+R +G Sbjct: 188 ANNVSNILAKLHAPDRTAAILRARRAGLG 216 >UniRef50_B9L1R6 Response regulator uvrY n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L1R6_THERP Length = 221 Score = 258 bits (660), Expect = 1e-67, Method: Composition-based stats. Identities = 58/211 (27%), Positives = 101/211 (47%), Gaps = 9/211 (4%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDHP+ +R LL + DI ++ E AV+ TL+PD+ ++D+ +PG N Sbjct: 6 IRVLLADDHPIVRVGLRALLEAEPDIAVVGEAGTADEAVELARTLQPDVAVLDISMPG-N 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ L + +I++ + Y AG +G+V K +++ AI G Sbjct: 65 GLEALRRIASLGLPTRTLILTVHAEERYLLPVLQAGGSGYVRKSSLHTDLVEAIRLVARG 124 Query: 120 YCYFPFSLNRFVGSLTSD-------QQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 + + R + D Q LS++E V+R G +IA+++F+S Sbjct: 125 EVFIDQAAARTLLQGYLDHARTGEVQDPAQLLSEREREVLRLTAAGYTAQEIADQLFLSP 184 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 KTV TY+ R+M+KL +L FA R + Sbjct: 185 KTVETYRHRVMQKLGFSRRSELVRFALRIGL 215 >UniRef50_C0GJ72 Two component transcriptional regulator, LuxR family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJ72_9FIRM Length = 212 Score = 258 bits (660), Expect = 1e-67, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 98/204 (48%), Gaps = 3/204 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH + +R LL +D +E+ E AV + PD++++D +P + Sbjct: 5 IKVMLVDDHSVVRQGLRLLLELDDTMEVCGEAETLTGAVAVCAEVAPDVILLDFKLPDGD 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI L+++ III++A D AGA+G++ K +I I+A G Sbjct: 65 GIIGCGNLKRQFPQVKIIILTAYADDHLVTETIKAGADGYLLKNVESEELINTIQAVHKG 124 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDS--LSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 S+ + QQ L+ +E+ ++ I GK N +IAE M IS+KTV Sbjct: 125 QSVLDPSVTEILFDNIKSQQPKKEHNLTPKEVQILDMISVGKANKEIAEIMKISDKTVRN 184 Query: 178 YKSRLMEKLECKSLMDLYTFAQRN 201 Y S +++KL + + ++ RN Sbjct: 185 YVSNILQKLNVSNRTEAASYWMRN 208 >UniRef50_C6XAP6 Two component transcriptional regulator, LuxR family n=3 Tax=cellular organisms RepID=C6XAP6_METSD Length = 214 Score = 258 bits (660), Expect = 1e-67, Method: Composition-based stats. Identities = 50/206 (24%), Positives = 106/206 (51%), Gaps = 3/206 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH + + + LL + + I+++AE G A Q PD+ ++D+ +PG+ Sbjct: 6 IRVLLVDDHTVVRSGLCRLLEQHSGIKVVAEAESGEQAYQVFGEYLPDVTVMDLSMPGMG 65 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + + R + ++I S + + +GA G+V+K + ++ A+ G Sbjct: 66 GLEAMRRILARYRTARVLIFSMHENAAFAMQTLKSGARGYVAKTGSFDELVKAVVEVARG 125 Query: 120 YCYFPFSLNRFVG--SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 Y S+ + + ++ D + LS +E V R +GK+ +IAE + IS KTV+ Sbjct: 126 KSYISTSIAQKIALQTVIGDGDLISQLSPREFEVFRLFAEGKNAEEIAEVLKISQKTVAN 185 Query: 178 YKSRLMEKLECKSLMDLYTFAQRNKI 203 Y + + +KL + +++ FA ++ + Sbjct: 186 YHTLVKQKLGLSNPVEMVRFAIKHGL 211 >UniRef50_C4L5Q6 Two component transcriptional regulator, LuxR family n=2 Tax=Bacillales RepID=C4L5Q6_EXISA Length = 230 Score = 258 bits (660), Expect = 1e-67, Method: Composition-based stats. Identities = 55/220 (25%), Positives = 102/220 (46%), Gaps = 19/220 (8%) Query: 2 NAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 I+DDH L ++ + +++ ++AE G A++ KP+I+I+D+++P +NG Sbjct: 7 RIAIVDDHELFREGLKRIFDLEDEFTVVAEGRTGREAIRIAGEQKPEILIMDINMPDMNG 66 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 I+ + L ++I+S +D Y H +AGA+GF+ K+ +I+A+ A Sbjct: 67 IEATKQLSLLSPETRVLILSIHDDESYITHALEAGASGFLLKEVASTELISAVRAVAKDG 126 Query: 121 CYFPFSLNRFVG------------------SLTSDQQKLDSLSKQEISVMRYILDGKDNN 162 Y + V +D LS++E+ V+ + DG+ N Sbjct: 127 AYLHPKVTTNVLKEYRRLLQFKGEQAGRGVESRTDDPVYQLLSRREVEVLHLLADGRSNR 186 Query: 163 DIAEKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNK 202 DI++ +FIS KTV + S ++ K++ A R Sbjct: 187 DISDMLFISEKTVKNHVSSVLRKMDVNDRTQAVVDAIRRG 226 >UniRef50_Q1AST2 Two component transcriptional regulator, LuxR family n=2 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AST2_RUBXD Length = 232 Score = 258 bits (660), Expect = 1e-67, Method: Composition-based stats. Identities = 49/211 (23%), Positives = 98/211 (46%), Gaps = 8/211 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + I++DDH L A R +L + D E++ E + G A++ L+PD+V++D+ +PGV+ Sbjct: 11 VRLIVVDDHDLIRAGFRLVLEQEPDFEVVGEASSGREAIELCRRLRPDVVVMDLAMPGVD 70 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ +++ +++V+A D Y AGA G+V K + +I+A+ +G Sbjct: 71 GLEATRRIKEEHPQVAVLVVTALEDPEYMLEALKAGAAGYVLKSSPLPRVISALRRLLSG 130 Query: 120 YCYFPFSLNRFVGSLTSDQ-------QKLDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 L + + + + L+ +E V+ + G+ N +IA ++ IS Sbjct: 131 ESPLNQELAARLIQDLARRPGGGGNPPPAEELTAREREVLVLMARGRTNPEIARELVISR 190 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 T ++ ++ KL A + Sbjct: 191 GTAKSHVQNIIRKLGVSDRTQAVARAFELGL 221 >UniRef50_Q1GZT3 Two component transcriptional regulator, LuxR family n=10 Tax=Proteobacteria RepID=Q1GZT3_METFK Length = 215 Score = 257 bits (659), Expect = 1e-67, Method: Composition-based stats. Identities = 54/207 (26%), Positives = 105/207 (50%), Gaps = 4/207 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I DDH + ++ +L + DIE++A+ A++ T D+V++D+ +P + Sbjct: 7 IKVVIADDHAILREGLKQILAETEDIEVVADAKNAAEAIKLAGTKGLDVVVLDISLPDRS 66 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ ++K ++++S + Y AGA G++SK+ + ++ AI G Sbjct: 67 GIEACNIIKKEHPGVAVLMLSMHREDAYAIRALRAGAVGYLSKQSASDQLVTAIRTVAKG 126 Query: 120 YCYFPFSLNRFVGSLTS---DQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 Y + + S ++ D+LS +E + I G ++IAE + +S KTVS Sbjct: 127 KKYISAEVALALADQVSGGLEKPIHDTLSNREFQTLTMIASGLSVSEIAENLSLSVKTVS 186 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKI 203 Y++RL+EKL + +L +A +N + Sbjct: 187 MYRARLLEKLNLRHNAELTHYAIKNNL 213 >UniRef50_C4ZEG3 Two-component response regulator (Extracellular proteinase response regulator) n=3 Tax=Bacteria RepID=C4ZEG3_EUBR3 Length = 214 Score = 257 bits (659), Expect = 1e-67, Method: Composition-based stats. Identities = 65/208 (31%), Positives = 117/208 (56%), Gaps = 5/208 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 +N +I DDH + ++NLL DI+++AE G + +++T +PD++++D+++P +N Sbjct: 3 INIMITDDHSMIREGLKNLLELDGDIKVIAEAENGEDCLDKLKTFRPDVLLLDINMPKMN 62 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++VL+ L+ R+ +++++ N+ Y D G NG+V K + AI +G Sbjct: 63 GLEVLKALKDRKSKVKVLVLTVHNETEYLMKAVDIGINGYVLKDSESAELKKAIFTIADG 122 Query: 120 YCYFP----FSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 Y +LN + D+ K+D+L+K+E+ V++ + GK N DIA++M IS +TV Sbjct: 123 ETYIQPSLIPALNSKMIQKNEDELKIDALTKREMEVLKEMAVGKFNRDIAKEMKISERTV 182 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKI 203 + S + +KLE FA RN I Sbjct: 183 KNHISSIFKKLEVTDRTQAAVFAIRNNI 210 >UniRef50_A3CKH3 Two-component system transcriptional regulator (CheY domain and HTH-like DNA-binding domain), putative n=30 Tax=Bacteria RepID=A3CKH3_STRSV Length = 227 Score = 257 bits (659), Expect = 2e-67, Method: Composition-based stats. Identities = 45/215 (20%), Positives = 106/215 (49%), Gaps = 12/215 (5%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I DD L +++ +L + DIE++ + +G ++++ ++PD++++D+ +P ++ Sbjct: 2 IKVLIADDQALIRESLQIILSAHADIEVVGTVGDGKEVLEKLHRVRPDVILMDIRMPVMD 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ + ++++ III++ +D + GA+G++ K + AI+ G Sbjct: 62 GVLCTKAVKEQYPDVKIIILTTFDDDEFIFSALKYGASGYILKGVSTEELHEAIQTVYRG 121 Query: 120 YCYFPFSLNRFVGSLTSD-----------QQKLDSLSKQEISVMRYILDGKDNNDIAEKM 168 ++ V + S ++ ++ +S+ E +++ I G N +IA K+ Sbjct: 122 GAMINPNIATKVFKIFSQMAQSNFAITVTEENIEDMSRTEWKIIQQIGFGISNKEIAAKL 181 Query: 169 FISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 F+S TV Y S ++ KL + L +A + + Sbjct: 182 FLSEGTVRNYLSGILAKLNLRDRTQLAIWAVQTGV 216 >UniRef50_C5VAN3 Two component transcriptional regulator, LuxR family n=2 Tax=Corynebacterium matruchotii RepID=C5VAN3_9CORY Length = 215 Score = 257 bits (658), Expect = 2e-67, Method: Composition-based stats. Identities = 52/209 (24%), Positives = 105/209 (50%), Gaps = 6/209 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I DD L A + +L + DIE++ E + G A+ + L+PD+V +D+ +PG + Sbjct: 5 IRVVIADDEALIRAGLATILQASGDIEVIGEASTGEEALTVAQRLQPDVVCMDIRMPGGD 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ +++ + + +I+++ + Y +AGA G + K M +++ + A G Sbjct: 65 GLEATRRIQQLEPAPAVIVITTFDMDEYVFGALEAGACGILLKDSSMTDLVEGVRRAALG 124 Query: 120 YCYFPFSLNRFVGSLTSDQQKL-----DSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 SL R V + + ++ + + L+ +E+ + + G NN+IA +F+ T Sbjct: 125 EGLVDASLTRRVIAEFTRRKSIFTSSSEVLTPRELDCVAQLCQGMSNNEIATTLFLEPST 184 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 V T+ S M K + + L +A RN + Sbjct: 185 VKTHLSSAMAKTGTHNRVQLVIWAFRNGV 213 >UniRef50_A5D0L7 Response regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D0L7_PELTS Length = 223 Score = 257 bits (658), Expect = 2e-67, Method: Composition-based stats. Identities = 49/210 (23%), Positives = 100/210 (47%), Gaps = 7/210 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 + +++DD PL ++R L +DI ++ E + G A++ + LKP ++++DV++P ++G Sbjct: 9 IQLLLVDDDPLVRRSLRMLFELHDINVVGEASNGEEALKAIARLKPTMILMDVNMPKMDG 68 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 IQ L+ ++ +II++ N H G + +V K +I +E+ G Sbjct: 69 IQALKAIKTNYPDIQVIILTVHNQHEKVVQAIRDGCSAYVLKDSPPEQLIEVVESVAEGR 128 Query: 121 CYFPFSLNRFVG-------SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 + S+ + + L L+ +E V++ I++G N +IA K+ I+ + Sbjct: 129 YFVDTSIANELLVNLVQGTPRRQHPKNLPLLTLREKEVLQLIVNGLSNKEIAGKLNITLR 188 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TV + S ++ KL A + + Sbjct: 189 TVKAHVSSILMKLNVNDRTQAAVLAIQENL 218 >UniRef50_D1Y661 DNA-binding response regulator, LuxR family n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y661_9BACT Length = 216 Score = 257 bits (658), Expect = 2e-67, Method: Composition-based stats. Identities = 57/209 (27%), Positives = 105/209 (50%), Gaps = 7/209 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH + + +R LL K D IE+ +G AV E L+PD+ ++D+ +P +N Sbjct: 3 IRVLLADDHEMFLEGLRELLGKADGIELAGLARDGAEAVAAAERLQPDVALMDMTMPRLN 62 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GIQ + + ++++S D AGA G+V K+ + AI+ NG Sbjct: 63 GIQATQKIAAGSPGTKVLVLSMHGDKNLIVESLKAGARGYVLKECSSQELCLAIQTVANG 122 Query: 120 YCYFPFSLNRFV------GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 Y ++ + + +Q LS++E+ V++ ++ G + IAE++ IS Sbjct: 123 QYYLTPAILSTLIGDYLRLTENEEQGSDCPLSERELDVLKLLVKGCNAKQIAEQLSISKN 182 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQRNK 202 TV T++ +++KL C S+ +L +A R Sbjct: 183 TVDTHRRHILDKLGCNSMAELTRYAIREG 211 >UniRef50_C4ZNU7 Two component transcriptional regulator, LuxR family n=1 Tax=Thauera sp. MZ1T RepID=C4ZNU7_THASP Length = 220 Score = 257 bits (658), Expect = 2e-67, Method: Composition-based stats. Identities = 52/208 (25%), Positives = 100/208 (48%), Gaps = 5/208 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH + A+R LL ++E++AE G + + D+V +D+ +PG++ Sbjct: 3 LRILLADDHQMFRHALRALLARDPELEVVAEAASGEEVLAIADAQPVDLVCMDIAMPGMD 62 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ L R + +I +SA D + AGA G+++K E + ++ AI G Sbjct: 63 GIEATRRLLARHPALRVIGLSAFADRQFVTDLLAAGARGYITKGEAGDELLRAIRTVCEG 122 Query: 120 YCYFPFSLNRFVGSLTSDQQKL----DSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 Y + V D + L+ +E V++ I +G + I +++ I+ TV Sbjct: 123 RSYLCPEVAATVADALRDSPGVYAAAPRLTARERQVLQLIAEGLTSVQIGDRLHIAASTV 182 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKI 203 ++ LM KL+ ++ +L +A + I Sbjct: 183 EVHRRNLMRKLDLHNVAELTRYAIHSGI 210 >UniRef50_C7Q6M6 Two component transcriptional regulator, LuxR family n=89 Tax=Bacteria RepID=C7Q6M6_CATAD Length = 225 Score = 256 bits (657), Expect = 2e-67, Method: Composition-based stats. Identities = 51/210 (24%), Positives = 98/210 (46%), Gaps = 6/210 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I DDH + +R L + IE+ E +G +R L+PD++++D+ +PGV+ Sbjct: 8 IRVLIADDHRMVRQGLRTFLELQEGIEVAGEAADGAECAERAAELEPDVILLDLVMPGVD 67 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ +E LR+ + +++V++ D AGA G+V K + AA+ + G Sbjct: 68 GVGAMELLREAGSTARVLVVTSFTDRRMIIPAIRAGARGYVYKDVDPAALAAAVRSVHAG 127 Query: 120 YCYFPFSLNRFVGS-----LTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 + + + + +L+ +E V+ I G+ N +IA + ++ KT Sbjct: 128 HVLLEPEVATALLDSGSNGAADQGPQAPALTAREREVLVLIAQGRANREIARALVLAEKT 187 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQRNKIG 204 V T+ S ++ KL +A R+ I Sbjct: 188 VKTHVSNILMKLGVADRTQAALWAVRHGIA 217 >UniRef50_B8FX94 Two component transcriptional regulator, LuxR family n=2 Tax=Desulfitobacterium hafniense RepID=B8FX94_DESHD Length = 212 Score = 256 bits (657), Expect = 2e-67, Method: Composition-based stats. Identities = 48/207 (23%), Positives = 98/207 (47%), Gaps = 4/207 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I DDHPL +R +L + I+++ E+ +G A+ TL DI+++D+++PGVN Sbjct: 2 IRVVIADDHPLLREGLRRILEFEEGIQVVCEVGDGQGAINVSRTLDFDILLMDLNMPGVN 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ +R+ + I++++ + G G++ K +I +I +G Sbjct: 62 GLEACRVIRRENETIGILVLTVDDSDEKVFQVLQLGVAGYLLKDVDPKTLIDSIRKVHSG 121 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDS---LSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 ++ + + LS +E+ ++ Y++ G N +I + +FIS KTV Sbjct: 122 QPILSPAVTGKLLGQLVHPTQNRDTCGLSDRELQILTYVVKGSSNREIGQALFISEKTVK 181 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKI 203 + S + KL + A + K+ Sbjct: 182 NHLSSIFRKLAVEDRTQAALKAVKLKL 208 >UniRef50_C5C7H0 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=9 Tax=Bacteria RepID=C5C7H0_MICLC Length = 230 Score = 256 bits (657), Expect = 2e-67, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 99/219 (45%), Gaps = 16/219 (7%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++DD L + + L+ + D+ ++AE G AV V D+V++DV +P ++ Sbjct: 9 VRVALVDDQALIRSGLAMLVDSQPDLTVVAEAGSGREAVASVSVAGADVVLMDVRMPEMD 68 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ L +R + +++++ + Y +AGA+GF+ K ++AAI G Sbjct: 69 GIEATRALLRRPDAPRVVVLTTFDLDEYAFDAIEAGASGFLLKDAPPEELLAAIRTVHRG 128 Query: 120 YCYFPFSLNRFVGSLTSDQ---------------QKLDSLSKQEISVMRYILDGKDNNDI 164 S R + + + + + SL+ +E V+ + G N +I Sbjct: 129 DAVIAPSTTRRLLTHMAPRLRSDQVRSAECEEQQAAVASLTPREREVLVLMAQGAANLEI 188 Query: 165 AEKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 A ++ +S TV T+ R++ KL + + A R + Sbjct: 189 AAELVLSEATVKTHVGRVLAKLGARDRVQAVLIAHRAGL 227 >UniRef50_Q1ASU8 Two component transcriptional regulator, LuxR family n=2 Tax=Bacteria RepID=Q1ASU8_RUBXD Length = 207 Score = 256 bits (657), Expect = 2e-67, Method: Composition-based stats. Identities = 48/204 (23%), Positives = 94/204 (46%), Gaps = 4/204 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDHP+ + +L + E++ E +G ++ L+PD+V++D+++PG Sbjct: 4 IRILVADDHPMLREGLSAVLGTRPGFEVVGEAGDGEEVLRLASGLRPDVVLLDLEMPGTG 63 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++VL LR +++ +A +D GA G + K I A+ G Sbjct: 64 GVEVLRRLRGLDDPPKVVVFTAYDDER-LLEALREGARGCLLKGASRTEIFDAVRTVHAG 122 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 P + V + + L+ +E+ V+R + G N ++A +FIS +TV + Sbjct: 123 GSVIPPEITARVLKEMRGES--EPLTPRELEVLRLVARGLTNREVARALFISERTVKFHV 180 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 S L+ KL ++ A+ + Sbjct: 181 SSLLAKLRAENRTQAVAIARERGL 204 >UniRef50_A7NIZ3 Two component transcriptional regulator, LuxR family n=2 Tax=Roseiflexus RepID=A7NIZ3_ROSCS Length = 230 Score = 256 bits (657), Expect = 3e-67, Method: Composition-based stats. Identities = 51/209 (24%), Positives = 93/209 (44%), Gaps = 7/209 (3%) Query: 2 NAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 +I+DDH LA A + +L + IE++ E G +A+ V D+V++D+ +P ++G Sbjct: 15 RVLIVDDHELARAGLAAVLACEPGIEVVGEADNGAAALDFVARHPVDLVMMDLQMPVIDG 74 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 I+ ++ + II+V+ + AG G++ K II A+ G Sbjct: 75 IEATRRIKALHPAIGIIMVTVQAKPDALMEALRAGVAGYLLKDASRREIIGAVRQVLRGE 134 Query: 121 CYFPFSLN----RFVGSLTS--DQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 + L R + T D ++ L+ +E V+R ++ GK N +IA ++ IS T Sbjct: 135 AFLNPDLVLQTLRRLAHATPTDDATPIEPLTPREQQVLRLLMQGKTNREIARELIISPGT 194 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 V + ++ KL A + Sbjct: 195 VKVHVEHIIAKLGVSDRTQAAVRALELGL 223 >UniRef50_Q2W7M4 Response regulator n=3 Tax=Magnetospirillum RepID=Q2W7M4_MAGSA Length = 209 Score = 256 bits (656), Expect = 3e-67, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 108/205 (52%), Gaps = 2/205 (0%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 + +I +D L + LL +D+ I+ E +G A++ TL PD+V++D+ +P ++G Sbjct: 3 VRILIAEDQQLVRQGLVALLAVDDVTIVGEAEDGKGAIEMARTLAPDVVLMDLSMPELDG 62 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 ++ +++ +++++ N AGA+G+ KK G ++AAI A G Sbjct: 63 VEATRRIKQVAPQVRVLVLTVANCERRVAEALAAGADGYALKKLGHGELMAAINAVCAGK 122 Query: 121 CYFPFSLNRFVGSLTSDQQKL--DSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTY 178 Y L+ + + + SL+ +E V++ I G N +IA+++ I+ KTV T+ Sbjct: 123 TYLGPGLSEDLVKEYLEGSDMGGGSLTAREREVLQLIARGHKNREIADELGIAIKTVETH 182 Query: 179 KSRLMEKLECKSLMDLYTFAQRNKI 203 ++++M+KL+ + +L +A R + Sbjct: 183 RTKIMQKLDLHNSAELAAYAIRRGL 207 >UniRef50_C0N6H7 Response regulator receiver domain protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N6H7_9GAMM Length = 214 Score = 256 bits (656), Expect = 3e-67, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 104/206 (50%), Gaps = 3/206 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH + + + LL +N DI ++ E G A Q + PD++++D+ +PG+ Sbjct: 5 IRVMLVDDHAVVRSGLCRLLEQNTDISVVGEAESGEQAYQTYPEISPDVLVMDMSMPGMG 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + + R +I+ S + Y AGA G+V+K +++ A+ K+G Sbjct: 65 GLEAVRRILNRWSGAKVIMFSMHENATYAIQSLTAGAMGYVAKSGHAEDLVKAVREVKSG 124 Query: 120 YCYFPFSLNRFVG--SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 + + V SL D L+ +E V R + +GK +DIA ++ I KTV+ Sbjct: 125 KSFLSSDMAHKVALQSLAGDDNPTQRLTSREFEVFRLLAEGKLVDDIASRLNIGQKTVAN 184 Query: 178 YKSRLMEKLECKSLMDLYTFAQRNKI 203 Y++ L +KL S +DL A + + Sbjct: 185 YQTSLKQKLGIHSPVDLVRLAMKYGV 210 >UniRef50_D1BX47 Two component transcriptional regulator, LuxR family n=14 Tax=Actinomycetales RepID=D1BX47_XYLCX Length = 234 Score = 256 bits (656), Expect = 3e-67, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 97/220 (44%), Gaps = 17/220 (7%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETL--KPDIVIIDVDIPG 57 + ++DD + A R ++ + D+ ++AE +G A++ + L + D+V++DV +P Sbjct: 10 IRVALVDDQQMVRAGFRMVIDSQPDMTVVAEAGDGVEALRVLGALPVRADVVLMDVRMPR 69 Query: 58 VNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAK 117 ++G+ L + +++++ + Y +GA+GF+ K ++ AI Sbjct: 70 MDGLTATAALTSGADAPRVVVLTTFDIDEYVLEAIRSGASGFMLKDAPPEEMLGAIRTVH 129 Query: 118 NGYCYFPFSLNRFVGS--------------LTSDQQKLDSLSKQEISVMRYILDGKDNND 163 G S R + + L +L+ +E V+ + G+ N + Sbjct: 130 AGDAVIAPSSTRRLLEHLVTALPTPAPDTPPSPAHAALATLTDREREVLELMARGRSNTE 189 Query: 164 IAEKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 IA +F++ TV T+ R++ KL+ + + A + Sbjct: 190 IAADLFVAEATVKTHVGRILAKLDARDRVQAVVLAYETGV 229 >UniRef50_Q024Y7 Two component transcriptional regulator, LuxR family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q024Y7_SOLUE Length = 225 Score = 256 bits (656), Expect = 3e-67, Method: Composition-based stats. Identities = 59/209 (28%), Positives = 104/209 (49%), Gaps = 8/209 (3%) Query: 3 AIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGI 61 +++DDH L +R +L + ++ ++ E G AVQ + PDIV++D+ +PG+NGI Sbjct: 5 IVLVDDHKLVRDGVRMILERGSEFLVVGEAENGADAVQLCKKSSPDIVLMDIGLPGMNGI 64 Query: 62 QVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 121 + L + S +II+S +D +GA FV KK N ++ A+ G Sbjct: 65 EATTELLRHCPSVKVIILSMYDDENSVVSAIRSGARAFVLKKASSNELLDALRTVARGGS 124 Query: 122 YFPFSLNRFVGSLTS-------DQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 Y ++ + D+ L+SLS +E+ V+R + +GK + DIA + + +T Sbjct: 125 YLSSQVSDRLLQRIQRGDLETHDRSPLESLSPRELQVLRLVAEGKTSKDIAVLLDLGLQT 184 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 V +Y+ +M+KL ++ L A I Sbjct: 185 VRSYRKTMMKKLGVNNVAGLTQLALAAGI 213 >UniRef50_UPI00018507A5 two component LuxR family transcriptional regulator n=1 Tax=Bacillus coahuilensis m4-4 RepID=UPI00018507A5 Length = 212 Score = 256 bits (656), Expect = 3e-67, Method: Composition-based stats. Identities = 54/203 (26%), Positives = 94/203 (46%), Gaps = 10/203 (4%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I DDHPL + ++L D E++AE G AVQ L PD+V++D+ +P +N Sbjct: 4 IRVLIADDHPLFRQGVSSVLANTPDNEVIAEAGSGEEAVQMACNLLPDLVLMDIQMPDLN 63 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ + + III++ D AGA G+V K +I+ A+ A G Sbjct: 64 GIEATRKILSKCRDIYIIIITMFEDDTSVFSAMQAGARGYVLKDAEKEDILRAVRAIAKG 123 Query: 120 YCYFPFSLNRFVGSLTSDQQ---------KLDSLSKQEISVMRYILDGKDNNDIAEKMFI 170 F + + + + L+ +E V+ + G N+++AE + + Sbjct: 124 EVLFSSGVASRMIDYFAQGEVTQTVVASTLFPELTSRESEVLFLLSKGASNSEVAETLGL 183 Query: 171 SNKTVSTYKSRLMEKLECKSLMD 193 SNKTV Y + ++ KL+ + Sbjct: 184 SNKTVYNYVANILNKLQVSDRQE 206 >UniRef50_Q67MG8 Two-component response regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67MG8_SYMTH Length = 197 Score = 256 bits (655), Expect = 5e-67, Method: Composition-based stats. Identities = 47/194 (24%), Positives = 95/194 (48%), Gaps = 8/194 (4%) Query: 18 NLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIII 77 L + D+E++ E G AV+ + LKPD+VI+D+ +P ++GI+ +++ +I Sbjct: 1 MLQSEPDLELVGEAGRGEEAVELTKALKPDVVIMDISLPDMSGIEATRLIKEAVPETRVI 60 Query: 78 IVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYFPFSLNRFVGSLTSD 137 ++ + + AGA+ ++ K+ +++ AI A G ++ R V Sbjct: 61 GLTMHEEEPFVLEFLRAGADAYIVKRSAAADLVGAIRAVMEGQAVLDPAVTRAVVEGYVS 120 Query: 138 QQKLD--------SLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKSRLMEKLECK 189 + L+ +E ++ I +G N +IA +++IS KTV T++S +++KL Sbjct: 121 RPGRAVGQPEEPCPLTPREREILVLIAEGLTNAEIARRLYISEKTVQTHRSNMLDKLGIH 180 Query: 190 SLMDLYTFAQRNKI 203 +L +A R + Sbjct: 181 DRTELVRYAIRQGL 194 >UniRef50_C4DCK3 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=3 Tax=Actinomycetales RepID=C4DCK3_9ACTO Length = 214 Score = 256 bits (655), Expect = 5e-67, Method: Composition-based stats. Identities = 56/209 (26%), Positives = 101/209 (48%), Gaps = 7/209 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DD L A +R L DIE++ E G +AV+ L PD+V++D+ +PG++ Sbjct: 2 IRVLLVDDQRLIRAGLRMLCEPAADIEVVGEADGGQAAVRLAGELCPDLVLMDLRMPGMD 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI + + + S ++ ++ +D + AGA GF+ K N ++ AI A +G Sbjct: 62 GITATQRILAERPSTRVVALTTFDDDDHLYPALAAGACGFLVKDTSPNELLEAIRKAADG 121 Query: 120 YCYFPFSLNRFV------GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 F + + + + L L+ +E V+ + G N DIAE++ + Sbjct: 122 DTPFSAGVVKRIVDSAVRARASVPTATLPKLTTREREVLALVGAGYANVDIAERLHLGVT 181 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQRNK 202 TV T+ + LM K C + + L A R+ Sbjct: 182 TVKTHIASLMTKTGCSNRVRLAVLAVRSG 210 >UniRef50_A0L9F1 Two component transcriptional regulator, LuxR family n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L9F1_MAGSM Length = 206 Score = 255 bits (654), Expect = 5e-67, Method: Composition-based stats. Identities = 58/204 (28%), Positives = 106/204 (51%), Gaps = 1/204 (0%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + I+ DDH + + +LL + ++EI+ E G A+Q + L PD+ ++D+ +PG+N Sbjct: 2 IRIIMADDHTIFRQGLAHLLSAHQELEIVGEAGRGDDALQLIRDLNPDVALLDISMPGLN 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ V++ + + + +++++ +D AGA G+V K + ++ AI A G Sbjct: 62 GLDVVKRVVEEKRPTRLLLLTMHDDPTLAIKAEQAGALGYVVKDNAFSELLDAILAVAAG 121 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 + + V L LS +E V+R + DG+ N +IA + IS KTV T++ Sbjct: 122 KRFVSEVVAEKVNELERLDDLPVQLSPREKEVVRLVADGQTNKEIARSLGISPKTVDTHR 181 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 +RLM KL + D+ +A R + Sbjct: 182 TRLMRKLNLHTTADVVRYAMRMGL 205 >UniRef50_A1SKW0 Two component transcriptional regulator, LuxR family n=1 Tax=Nocardioides sp. JS614 RepID=A1SKW0_NOCSJ Length = 215 Score = 255 bits (654), Expect = 6e-67, Method: Composition-based stats. Identities = 54/204 (26%), Positives = 104/204 (50%), Gaps = 3/204 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH L R +L + +D++++ + G A+ V L P +V++D+ +PG+N Sbjct: 6 IAVLVVDDHTLHRDGTRRILEQYDDVDVVGDAASGEDALAMVNRLHPRVVLMDIRLPGMN 65 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ +R+R ++IV+A +D Y + D GA G++SK ++ A+ A G Sbjct: 66 GIEATRRIRERHPDTRVLIVTAYDDEEYVRGAFDVGAAGYLSKTAPGRELVEAVRAVAGG 125 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 +L + + S ++L+ +E +V+R + +G N IA ++ IS +TV + Sbjct: 126 NSVLQPTLMAALLAKRS--SPANTLTDRERAVLRLLAEGMHNKQIASRLGISARTVERHC 183 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 R+ KL S + A + Sbjct: 184 DRIYGKLGVTSRTEAVVRAISANL 207 >UniRef50_A1ASJ5 Two component transcriptional regulator, LuxR family n=2 Tax=Desulfuromonadales RepID=A1ASJ5_PELPD Length = 208 Score = 255 bits (654), Expect = 6e-67, Method: Composition-based stats. Identities = 57/203 (28%), Positives = 109/203 (53%), Gaps = 1/203 (0%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 + +I DDH + + +L + + + E +G A+ + E L+PD+V++D+ +P +NG Sbjct: 3 VRILIADDHAIVREGLTMILESSGMIVAGEARDGRDALSQTEVLRPDVVVMDIAMPELNG 62 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 I + R +I++S N + AGA ++ K+ + ++ A+ A G Sbjct: 63 IDATRMIHGRLPEVKVIVLSMHNTREHVFRAMQAGARAYLLKESAGSGLVDAVRAVIRGE 122 Query: 121 CYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKS 180 CYF + ++ + LDSLS +E V++ +++G+ + +IAE + +S K++ TY+S Sbjct: 123 CYFGEGV-DAPQAVAGFKSPLDSLSLREREVIQLVVEGRTSAEIAELLSLSPKSIETYRS 181 Query: 181 RLMEKLECKSLMDLYTFAQRNKI 203 RLM KL ++ L FA ++ I Sbjct: 182 RLMVKLGVGNIPALVKFALQHGI 204 >UniRef50_C7MRK0 Response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein n=2 Tax=Saccharomonospora viridis DSM 43017 RepID=C7MRK0_SACVD Length = 226 Score = 255 bits (654), Expect = 6e-67, Method: Composition-based stats. Identities = 45/211 (21%), Positives = 99/211 (46%), Gaps = 8/211 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLK------PDIVIIDV 53 + +++DDH + +R L D+ +++E +G AV + P +V++D+ Sbjct: 11 VRVMVVDDHAIVRRGLRAYLETVPDLRLVSEAADGQEAVDLLNERHVVGDPMPHVVLMDL 70 Query: 54 DIPGVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAI 113 +P ++GI+ ++ ++++++ ++ AGA G+V K + A+ Sbjct: 71 QMPRLDGIEATRSILASYPDVKVVVLTSFSEAERVHAALSAGAAGYVLKDAEPEEVATAV 130 Query: 114 EAAKNGYCYFPFSLNRFVGSLTSDQQ-KLDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 AA G + ++ R + + Q + SL+ +E ++ + G N +IA+++ IS Sbjct: 131 RAAVKGEVHLDAAVARLLARRMASPQVGVTSLTARERDILVLVGQGLSNREIADRLVISE 190 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 +T T+ S ++ KL+ S A R + Sbjct: 191 RTARTHVSNVLSKLQLSSRTQAALLAIREGL 221 >UniRef50_Q5ZS73 Response regulator GacA n=10 Tax=Gammaproteobacteria RepID=Q5ZS73_LEGPH Length = 225 Score = 255 bits (653), Expect = 6e-67, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 113/207 (54%), Gaps = 4/207 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I+DDH L IR LL +D++++A+ G A+ V+T PD+V++D+ +PG++ Sbjct: 8 IKVLIVDDHALVRMGIRRLLEDMSDVDVVADAESGEQALAYVKTHSPDVVLLDMKMPGID 67 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G +V L+K + +I V+A GA G+++K+ G + AAI G Sbjct: 68 GWEVTRRLKKTNPNIKVIAVTAICSDPLPTRVLQLGAMGYLTKESGAEEMAAAIRKVAKG 127 Query: 120 YCYFPFSLNRFVG---SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 Y + + + S D LS++E+ VM I G + DIA+++F+S+KT++ Sbjct: 128 EKYLSAEIAQKMAINSLQESQDSPFDLLSEREMQVMLMITSGMNVQDIADRLFLSSKTIN 187 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKI 203 Y+ R+ EKL K+ ++L A +++I Sbjct: 188 GYRYRMFEKLGIKNDVELTYLAMKHRI 214 >UniRef50_D2BGT0 DNA-binding response regulator, LuxR family n=5 Tax=Dehalococcoides RepID=D2BGT0_DEHSV Length = 232 Score = 255 bits (653), Expect = 7e-67, Method: Composition-based stats. Identities = 55/209 (26%), Positives = 101/209 (48%), Gaps = 8/209 (3%) Query: 2 NAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 +I DDH + + LL + DIE++ E +G AV V KPD+V++D+ +P + G Sbjct: 5 KVLIADDHAVLREGMSRLLSQEKDIEVVGEAGDGQEAVDMVAQFKPDVVLMDIVMPRLTG 64 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 ++ + ++K S I+I++A +D Y +AGA+G++ K + I+ AI A K G Sbjct: 65 VEATKLIKKNNPSTCILILTAYSDIRYILGLLEAGASGYLLKSAKSDEIVGAIRAIKAGE 124 Query: 121 CYFPFSLNRFVGSL-------TSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 R + + + + LS +E+ +++ G N +IA+K+ +S + Sbjct: 125 SVLDSIATRKLLERVVNVSKESDEDKVRGQLSPREVEILQLASKGLSNREIADKLTLSMR 184 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQRNK 202 TV + S + K+ C + R Sbjct: 185 TVKAHLSNIFNKMRCSCRTEAIVKGFREG 213 >UniRef50_A9WKI8 Response regulator receiver n=3 Tax=Chloroflexaceae RepID=A9WKI8_CHLAA Length = 209 Score = 255 bits (653), Expect = 7e-67, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 101/205 (49%), Gaps = 3/205 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPG-V 58 + ++DDH + + L + DI ++ E G SA+Q T + D++++DV +PG + Sbjct: 4 IRVALVDDHSIVRRGLSAYLAAQPDIVVVGEAANGESALQMASTWQADVIVMDVLMPGGI 63 Query: 59 NGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKN 118 +GI+ L++ III+S D AGA ++ K+ ++ AI A Sbjct: 64 DGIETTRQLKRLIPHTHIIILSGYADDARVIGALRAGAITYIEKESQPEQLLEAIRGAMA 123 Query: 119 GYCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTY 178 G +L + + + + D+L+++E V++ + +G N +IA ++ +S +TV T+ Sbjct: 124 GKAVLAPALMQRILEAQTSKA-ADTLTEREREVLKLVAEGLTNAEIASRLTVSEETVKTH 182 Query: 179 KSRLMEKLECKSLMDLYTFAQRNKI 203 + ++ KL +A R+ + Sbjct: 183 VASILRKLGLAHRTQAAIYALRHGL 207 >UniRef50_B1M5J4 Two component transcriptional regulator, LuxR family n=7 Tax=Bacteria RepID=B1M5J4_METRJ Length = 222 Score = 255 bits (653), Expect = 7e-67, Method: Composition-based stats. Identities = 56/210 (26%), Positives = 106/210 (50%), Gaps = 8/210 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + + DDHP+ +A IR LL +IE++ E T G A+ + PD+ ++DV +PG+N Sbjct: 5 IRVALADDHPIVLAGIRTLLNADPEIELVGEATSGSEALPMIHAADPDVAVVDVSMPGLN 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+++ E + +++++ D Y + AGA G++ K+ +++ A+ A G Sbjct: 65 GLELTERVAGSCPRTRVLVLTVHEDAAYVQPLLKAGARGYLLKRSAAEDLLRAVRAVAAG 124 Query: 120 YCYFPFSLNRFVGSLTSDQ-------QKLDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 Y S+ + + ++LS +E V+R I G N +IA + +S Sbjct: 125 GIYLDPSVASHAMAHPATPTQGGDTEPSAEALSPRETDVLRLIAQGFSNKEIARRFDLSV 184 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNK 202 K++ TYK+R EKL ++ ++ +A + Sbjct: 185 KSIETYKARAAEKLGLRTRAEIIRYAAAHG 214 >UniRef50_UPI0001C314AF two component transcriptional regulator, LuxR family n=2 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C314AF Length = 228 Score = 255 bits (653), Expect = 8e-67, Method: Composition-based stats. Identities = 47/204 (23%), Positives = 106/204 (51%), Gaps = 1/204 (0%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I DDH + + +R +L + DI ++AE + SA + V P ++++D+++PG Sbjct: 14 IRVVIADDHRVVRSGLRMVLDAEPDIAVVAEAGDVPSAERAVRAHHPHVLVLDLNMPGEQ 73 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 + + L +++++ + D + + +GA G+V K+ + ++ A+ A+ G Sbjct: 74 SLPAIPRLVAELPETAVVVLTMQQDPAFAREALRSGARGYVLKEAADDELVQAVRLAREG 133 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 Y L + + D L+ +E+ V+R I G N +IA+++F+S +TV +++ Sbjct: 134 RTYLNPELGARMAAEPPPSGPPDDLTARELEVLRLIALGHTNAEIAQQLFLSIRTVESHR 193 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 + + +K+ S +L +A + + Sbjct: 194 AHIQQKVRRSSRAELVRYALDHGL 217 >UniRef50_C3JVF4 Two component transcriptional regulator, LuxR family n=2 Tax=Rhodococcus erythropolis RepID=C3JVF4_RHOER Length = 220 Score = 255 bits (652), Expect = 9e-67, Method: Composition-based stats. Identities = 44/214 (20%), Positives = 95/214 (44%), Gaps = 11/214 (5%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 ++ +I DD + L +I ++ G A ++V L+PD+V++D+ +P + Sbjct: 2 IDVLIADDQQVVRQGFELFLSGHPEIRVVGHAKTGVEAYEQVRALRPDVVLMDIRMPHGD 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ + +I+++ + Y D+GA GF+ K + +A+ G Sbjct: 62 GLTATREVLAEFPGTRVIVITTFDLDEYVFEALDSGAAGFLLKDADPEELSSAVLTVAEG 121 Query: 120 YCYFPFSLNRFVGSLTSDQQKLD----------SLSKQEISVMRYILDGKDNNDIAEKMF 169 L + + ++ LS +E+ V++ + G NNDIA+ + Sbjct: 122 GSVLSPRLTSRLIVEFARRKPAPMSTARSGSDHGLSAREMDVVQLLSQGLGNNDIADSLS 181 Query: 170 ISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 + TV ++ S + +KL+ ++ + + +A RN + Sbjct: 182 LEQSTVKSHISNICKKLQVRTRVQIVIWAYRNNV 215 >UniRef50_C0DXM6 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DXM6_EIKCO Length = 215 Score = 255 bits (652), Expect = 1e-66, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 103/205 (50%), Gaps = 2/205 (0%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDHPL + LL + EI+AE T+G V+ +PD+V++DV++P +N Sbjct: 6 IRILLVDDHPLFRRGLSFLLAQEYGFEIVAEATDGLEGVKLARFHRPDLVLLDVEMPVMN 65 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G + L + Q +++++ D K C + GA G++ K + ++ AI A G Sbjct: 66 GPEALAQMLDFQPGLPVLMLTISEDADNLKKCLELGARGYILKNADTDFLVEAIRQAVAG 125 Query: 120 YCYFPFSLNRFVGSLTSDQQK-LDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTY 178 +N S+ + LDSL+++E V+RY+ G N IA +MF+S TV + Sbjct: 126 QQTVSPEMNNAGQSIPPEHSAILDSLTQRERDVLRYVAGGISNKMIARRMFLSENTVKAH 185 Query: 179 KSRLMEKLECKSLMDLYTFAQRNKI 203 + KL + + +A+ + Sbjct: 186 MQNIFRKLNIDNRVRAAVYARELGL 210 >UniRef50_Q9RPE7 Response regulator n=5 Tax=Corynebacterium RepID=Q9RPE7_CORDI Length = 233 Score = 254 bits (651), Expect = 1e-66, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 95/220 (43%), Gaps = 17/220 (7%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++DD L A R +L ++DI + E +G A++ D++++DV +P ++ Sbjct: 2 ITVGLVDDQQLVRAGFRMVLDSQSDITVAWEANDGKEALENAANTPVDVILMDVQMPVMD 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + + II+++ + Y + GA+GF+ K ++IAA+ Sbjct: 62 GLEATKRIVATNTDTRIIVLTTFDSENYVVGAVEHGASGFLLKDTAPEDLIAAVRTVGEQ 121 Query: 120 YCYFPFSLNRFVGSLTSDQQK----------------LDSLSKQEISVMRYILDGKDNND 163 + + +D L+ +E ++ I GK N + Sbjct: 122 SAVISPAATAVLFKSMRGHAPQTDLVATPGGDINAGLIDPLTPREQEILLLIALGKSNTE 181 Query: 164 IAEKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 IAE++FIS TV T+ S+++ K + + FA + Sbjct: 182 IAEELFISLPTVKTHVSKVLSKTGSRDRVHAVLFAFSRGL 221 >UniRef50_C1RMQ2 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=2 Tax=Actinomycetales RepID=C1RMQ2_9CELL Length = 254 Score = 254 bits (650), Expect = 1e-66, Method: Composition-based stats. Identities = 48/211 (22%), Positives = 98/211 (46%), Gaps = 10/211 (4%) Query: 3 AIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGI 61 +++DD PL IR +L + +E++ E +G SAV+ L+PD+ ++DV +PG++G+ Sbjct: 12 VLVVDDQPLIRQGIRAVLRGQPGVEVVGEAHDGHSAVRTARRLRPDVTLMDVQMPGMDGV 71 Query: 62 QVLETLRKRQ-YSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 + + +++++ + + AGA G V K + ++AAI AA G Sbjct: 72 EATRVICADDDPPTSVVVLTMYDQDEHVFEALRAGARGLVLKDAPTSELVAAIHAAAAGD 131 Query: 121 CYFPFSLNRFVGSLTSDQQ--------KLDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 S+ R + + + L+ +E V R ++ G + AE++ + + Sbjct: 132 SLLSPSVTRRLIEEFARRPTVRMEATDGPAELTARERDVFRLLVQGLSTAEAAERLTLGD 191 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TV ++ L KL + + +A + + Sbjct: 192 STVKSHVQSLYRKLGVRDRVQAVIYAYEHGL 222 >UniRef50_D1BCA8 Two component transcriptional regulator, LuxR family n=18 Tax=Bacteria RepID=D1BCA8_SANKS Length = 234 Score = 254 bits (650), Expect = 2e-66, Method: Composition-based stats. Identities = 52/204 (25%), Positives = 93/204 (45%), Gaps = 3/204 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDHP+ A I +L ++DIE++ E +G AV TL PD+VI D+ +P ++ Sbjct: 29 VRVVVADDHPVVRAGIVGMLGVESDIEVVGEAEDGRQAVDLARTLSPDVVITDLRMPVLD 88 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ + + +++++ +AGA G++ K ++A I A G Sbjct: 89 GVGATREIVALPGTVRVVVLTTYETDGEILRAVEAGATGYLLKDTPRAELVAGIREAARG 148 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 S+ + S + D L+ +E+ V+R + G N + ++FIS TV T+ Sbjct: 149 QTVLTPSVATRLVSQVG--SRADRLTPREVEVLRAVARGLSNAAVGHELFISETTVKTHL 206 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 R KL T A + Sbjct: 207 IRAFGKLGVNDRTHAVTVATDRGL 230 >UniRef50_B5YIR2 Response regulator UvrY n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YIR2_THEYD Length = 213 Score = 253 bits (649), Expect = 2e-66, Method: Composition-based stats. Identities = 52/207 (25%), Positives = 104/207 (50%), Gaps = 4/207 (1%) Query: 1 MNAIIIDDHPLAIAAIRN-LLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I+DDH L ++ LL I+ E G A+ + DIV +D+ + +N Sbjct: 5 LKVLIVDDHTLFRKGLKEILLDTPYIKECKEAKSGYEAIDILSKESFDIVFLDIAMSDIN 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ L+ ++ I+++S + Y GA+G+++K ++ A++ G Sbjct: 65 GIETLKKIKILYPETKILMLSMYPEEQYAIRSLKCGASGYLTKSADPEELLKAVDKIIKG 124 Query: 120 YCYFPFSLNRFVG---SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 Y P + + + + D + LS++E V I GK +I++++ IS KTVS Sbjct: 125 GKYLPHTFSEKLLHYIDKSEDIPPHEKLSEREFQVFLMIAKGKSLIEISKELSISIKTVS 184 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKI 203 TY++R++EKL ++ ++ +A ++ + Sbjct: 185 TYRARILEKLGLENNAEIINYAIKHGL 211 >UniRef50_D1B9T1 Two component transcriptional regulator, LuxR family n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B9T1_THEAS Length = 227 Score = 253 bits (649), Expect = 2e-66, Method: Composition-based stats. Identities = 57/209 (27%), Positives = 109/209 (52%), Gaps = 5/209 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH L +R LL + D+E++ E +G + V+ V LKPD+++ D+ +P + Sbjct: 4 IRIVLADDHRLFRDGLRRLLEMEKDMEVIGEAEDGDATVEMVSALKPDVLLFDIHMPKKD 63 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GIQV++ L+ S + ++A +D + + G + +V K GM +++AI + G Sbjct: 64 GIQVVKDLKAMGCSPRFVAITAFDDDDHITALSSVGIDAYVLKASGMAELLSAIRSVYRG 123 Query: 120 YCYFPFSLNRFVGS----LTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 + Y + + S ++ L L+ +E+ V+ +I G +N +IA KM +S KTV Sbjct: 124 HSYVDPKVAGKLLSTFNRRREERDLLSRLTPREMEVLYWISQGLNNGEIARKMVLSEKTV 183 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKIG 204 + S +++KL+ FA + + Sbjct: 184 KNHVSHILKKLDLVDRTQAAVFAWKRGLA 212 >UniRef50_A4FAA4 Two component system response regulator n=2 Tax=Actinomycetales RepID=A4FAA4_SACEN Length = 218 Score = 253 bits (649), Expect = 2e-66, Method: Composition-based stats. Identities = 52/213 (24%), Positives = 98/213 (46%), Gaps = 10/213 (4%) Query: 2 NAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 ++ +D + A +R +L D+ ++AE +G AV V PD+V++D+ +P ++G Sbjct: 3 RILLAEDEQIVRAGLRKILESAGDLTVIAEAGDGAEAVTGVRRHAPDVVVMDIQMPRLDG 62 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 + + I+I++ + +AGA+GF+ K +I AI +G Sbjct: 63 LAATRQITSLPAPPKILILTMFDFDANVYSAIEAGASGFLLKDARPEELINAIRVIADGD 122 Query: 121 CYFPFSLNRFVGSLTSDQQK---------LDSLSKQEISVMRYILDGKDNNDIAEKMFIS 171 S+ R + S +D+ LD L+ +E ++ + G N IA+ + + Sbjct: 123 AMLSPSVTRRLLSHFADRNSPRGPTAVRGLDELTPRERQILSLVGGGLSNASIAKTLGAT 182 Query: 172 NKTVSTYKSRLMEKLECKSLMDLYTFAQRNKIG 204 TV + SRL+ KL+C++ + L A I Sbjct: 183 ESTVKGHVSRLLMKLDCENRVQLALIAHNAGIA 215 >UniRef50_C6CZA5 Two component transcriptional regulator, LuxR family n=4 Tax=Firmicutes RepID=C6CZA5_PAESJ Length = 221 Score = 253 bits (649), Expect = 2e-66, Method: Composition-based stats. Identities = 53/210 (25%), Positives = 102/210 (48%), Gaps = 8/210 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKP----DIVIIDVDI 55 + +I+DDH + +R L ++ E++AE G +A+ +E P D++++D+ + Sbjct: 7 LKVMIVDDHDMVRTGLRTYLMLEPKFEVVAEAGSGQAAISMLEAGLPSGLPDVILMDLMM 66 Query: 56 PGVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEA 115 PG++GI+ L + II++++ + +AGA +V K +I A+ Sbjct: 67 PGMDGIETTRQLIVEYPNLKIIMLTSFLEDDKVYGAIEAGAVSYVLKTVSAEELIYALHG 126 Query: 116 AKNGYCYFPFSLNRFV---GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 A G +++ + + Q + L+++E V+ I +G+ N +I E++ IS Sbjct: 127 AVKGMPVMTADVSQALTRGLRQRTAQSGDEELTEREKEVLLLIAEGRSNKEIGEELHISV 186 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNK 202 KTV T+ S L+ K E + L A R Sbjct: 187 KTVKTHVSNLLMKCELEDRTQLAVLAHRKG 216 >UniRef50_B2A6W2 Two component transcriptional regulator, LuxR family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A6W2_NATTJ Length = 215 Score = 253 bits (649), Expect = 2e-66, Method: Composition-based stats. Identities = 55/210 (26%), Positives = 108/210 (51%), Gaps = 8/210 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 ++ +++DDH + + LL ++D+E+ ++ A+ + PD+V++D+ +P Sbjct: 3 ISVLVVDDHAVLGKGLSMLLNSQDDMEVCGQVGTAKEALDTCKEKCPDVVLLDLSLPDKQ 62 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G ++++ L++ S ++ ++ D Y K +AG +G++ KK + +I+AI + G Sbjct: 63 GHEIIKELKESC-SARVLALTMHEDEAYFKRVVEAGGDGYILKKAADDELISAIRSVYQG 121 Query: 120 YCYFPFSLNRFVGSLTSDQQKLD------SLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 + + + + K LS +E V++ I G N +IAEK++IS K Sbjct: 122 EVIVDKTFTKLLIDYYRNPDKQSGTEKNYDLSDREKEVLQLIALGYTNKEIAEKLYISIK 181 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TV T+ +R+ EKL +L +A RN I Sbjct: 182 TVETHIARIKEKLGLNRRSELVRYAMRNNI 211 >UniRef50_A1K960 Probable transcriptional regulator, LuxR family n=1 Tax=Azoarcus sp. BH72 RepID=A1K960_AZOSB Length = 209 Score = 253 bits (648), Expect = 3e-66, Method: Composition-based stats. Identities = 56/208 (26%), Positives = 114/208 (54%), Gaps = 4/208 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I DDH + +R L + +I+AE G +A++ V T D+V++D+ +P +N Sbjct: 2 VKVLIADDHAVVRGGLRQFLSSTEEFDIVAEAANGQTALELVRTSGCDVVLLDITLPDLN 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++VL+ +++ + ++I S ++ + +AGA+G+++K I+AA+ G Sbjct: 62 GLEVLKRIKRSKPDLPVLIFSMFSEDEFALPALNAGASGYLNKDSPPAQILAALHTVVAG 121 Query: 120 YCYFPFSLNRFVGSLTSDQQ---KLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 Y SL + + T ++LS +E++V+ + G I E+ +S KT+S Sbjct: 122 ARYVSPSLAERLLAGTMSPGKRLPHENLSPREMAVLLLLSKGVPLTRIGEQFHLSVKTIS 181 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKIG 204 TY++R++EKL+ S ++ + ++K+G Sbjct: 182 TYRARILEKLDLASNAEITRYVLQHKLG 209 >UniRef50_C2C4B6 Transcriptional regulator n=1 Tax=Listeria grayi DSM 20601 RepID=C2C4B6_LISGR Length = 214 Score = 253 bits (648), Expect = 3e-66, Method: Composition-based stats. Identities = 57/211 (27%), Positives = 109/211 (51%), Gaps = 8/211 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIP-GV 58 M +I DDH + +A++ ++ + D+E++ + +G A +E+ +PDIV++D+ +P G Sbjct: 1 MKLLIADDHAVVRSALKFMINAQKDMEVIGDAADGTEAFLFIESNRPDIVLMDLSMPPGE 60 Query: 59 NGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKN 118 NG+ + + + +I+++ ++ Y AGA G++ K ++ AI + Sbjct: 61 NGLLTTKRITEAFPETKVILLTMHDEEAYITQALQAGAQGYIMKNSSEELLLDAIRSVMG 120 Query: 119 GYCYFPFSLN------RFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 G N + + + ++ LSK+E ++ I G N +IAE++FIS Sbjct: 121 GQIIIDPVFNYSSKQIEQLKRADASENIIERLSKREKEILPLIALGYGNKEIAERLFISA 180 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 KTV +KS +M+KLE K DL F + ++ Sbjct: 181 KTVEVHKSHIMKKLEMKKFSDLLRFCVKEQL 211 >UniRef50_C8WS10 Two component transcriptional regulator, LuxR family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WS10_ALIAD Length = 224 Score = 253 bits (648), Expect = 3e-66, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 105/205 (51%), Gaps = 3/205 (1%) Query: 2 NAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIP-GVN 59 +I+DDH L +R +L IE++ E + G A++ +PD++++DV +P G++ Sbjct: 5 RVVIVDDHALVRQGLRLILHGVAGIEVVGECSCGEDALKAAVKDRPDVMLMDVHMPQGLD 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI LR+ +I+++ +D + + DAG +G V K + + I+AAI+ + G Sbjct: 65 GITTARHLRQIAPQVRVIMLTMFDDRVHVEKMLDAGVSGIVFKHDDSSEIVAAIQHGQPG 124 Query: 120 YCYFPFSLNRFV-GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTY 178 + Y + S + + LS +E V+ + G N ++A+ + IS KTV T+ Sbjct: 125 HPYLSRRWGQRANAETVSPSRTAERLSPRETEVLVLLAQGYTNREVADALHISVKTVETH 184 Query: 179 KSRLMEKLECKSLMDLYTFAQRNKI 203 + +M ++ S L +A +N + Sbjct: 185 RQHIMRRIGLHSRAALVRYAYQNGL 209 >UniRef50_Q5NY27 DNA-binding response regulator, LuxR family n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NY27_AZOSE Length = 215 Score = 253 bits (648), Expect = 3e-66, Method: Composition-based stats. Identities = 52/208 (25%), Positives = 101/208 (48%), Gaps = 5/208 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH + A+R +L + I I+ E + G + + DI +D+ +PG+N Sbjct: 3 IRIVLADDHQMFRHALRAMLEKEPGIRIVGEASNGDELIDLISHQPVDIACVDIGMPGMN 62 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ L + +I +SA +D + +AGA G+V+K E ++ AI + Sbjct: 63 GIEATRRLLAIRPHVRVIGLSAFSDRQFVLDLLNAGATGYVTKAEAGEELLRAIHTVQQS 122 Query: 120 YCYFPFSLNRFVGSLTSDQQKLD----SLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 Y + V + D D ++ +E V++ I +G + IA+++ ++ TV Sbjct: 123 KTYLCPDVAATVTNALLDNAPKDISAPRITARERQVLQLIAEGYTSTRIADRLHLAPSTV 182 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKI 203 ++ +M KL+ S+ +L +A R+ I Sbjct: 183 EVHRRNIMRKLDLHSVAELTKYAIRSGI 210 >UniRef50_Q024A4 Two component transcriptional regulator, LuxR family n=2 Tax=Bacteria RepID=Q024A4_SOLUE Length = 225 Score = 253 bits (648), Expect = 3e-66, Method: Composition-based stats. Identities = 44/204 (21%), Positives = 99/204 (48%), Gaps = 5/204 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I DDHP+ + ++ + D+ ++ + G AV PD++++D+ +PG++ Sbjct: 23 IRVLIADDHPVVCLGLLGIINGQPDMTVVGQAKTGTEAVALARKHSPDVILMDLRMPGMS 82 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ E +R + +I+++ + AGA ++ K ++ AI + + G Sbjct: 83 GVEATEVIRAERPESAVIVLTTYQGDEDIRKALAAGAQSYLLKGMSHLKLLEAIRSVRTG 142 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 + YFP ++ V + +LS +E+ ++R I+ G N +IA+ + I+ TV + Sbjct: 143 HTYFPRAIRNSVPGKLNR----AALSPREMDILRLIVRGLSNQEIADALNITRGTVKWHV 198 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 + ++ +L+ A + I Sbjct: 199 NIILRRLDVNDRTQAVVVAVQRGI 222 >UniRef50_A3TJD7 Two-component response regulator n=1 Tax=Janibacter sp. HTCC2649 RepID=A3TJD7_9MICO Length = 207 Score = 253 bits (648), Expect = 3e-66, Method: Composition-based stats. Identities = 44/202 (21%), Positives = 92/202 (45%), Gaps = 1/202 (0%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++DDH L A +R LL + ++ E +G AV ++ D+V++D+ +P ++ Sbjct: 2 IRVYLVDDHQLVRAGVRTLLESDPGLSVVGEARDGQEAVAGIDAAASDVVLMDLSMPVMD 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + ++++++ +D K AGA G+V K +++AA+ AA G Sbjct: 62 GVEATRAILSTHPDTRVLVLTSFSDRERVKEVLAAGAIGYVLKDAEPADLLAAVHAAARG 121 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 + + D LS +E V+R + G N +A + I+ +TV + Sbjct: 122 EVPIDPRVAGALLPSAGGPSVADRLSPRETQVLRLVAQGLANKQVARALGITERTVKAHL 181 Query: 180 SRLMEKLECKSLMDLYTFAQRN 201 R+ ++ +A+ + Sbjct: 182 GRVFREIGVLDRTSAALWARDH 203 >UniRef50_B4D6Y1 Two component transcriptional regulator, LuxR family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6Y1_9BACT Length = 220 Score = 253 bits (647), Expect = 3e-66, Method: Composition-based stats. Identities = 55/210 (26%), Positives = 106/210 (50%), Gaps = 8/210 (3%) Query: 2 NAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 ++ DDH + +R LL ++D EI AE ++G +AVQ E L PDIVI+D+ +P +NG Sbjct: 8 RILLADDHDIVRRGLRTLLELRSDWEICAEASDGRAAVQFAEDLAPDIVILDLSMPELNG 67 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 ++ + +++++ + + AG G++ K + ++ A++A G Sbjct: 68 LEAARRIAAHCPRSRMLMLTMHETEQFVREALAAGVRGYILKTDAGRDLANAVDALIRGE 127 Query: 121 CYFPFSLNRFV-------GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 +F L + + L+ +E +++ + +G+ N D+ + + IS K Sbjct: 128 TFFASRLAATIYAAEFAGMGRRRRSKSQAGLTPREREILQLLAEGRKNRDVGKALNISVK 187 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 T T+++R+M KL S+ DL +A RN + Sbjct: 188 TAETHRARIMAKLGIDSVADLVRYAIRNGL 217 >UniRef50_A7HA46 Two component transcriptional regulator, LuxR family n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HA46_ANADF Length = 212 Score = 253 bits (647), Expect = 3e-66, Method: Composition-based stats. Identities = 58/209 (27%), Positives = 109/209 (52%), Gaps = 9/209 (4%) Query: 4 IIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 ++ DDH + +R L+ + E + G AV+ + L+PD+V++DV +P +NG++ Sbjct: 1 MVADDHEVVRRGVRALVESHPGWTVCGEASNGREAVRLAQELRPDVVVLDVTMPELNGLE 60 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 +R II+++ + DAGA G+V K++ +++ AI+A Y Sbjct: 61 ATREIRASVPDTEIILLTVHDSDQLLGQALDAGARGYVLKEDAARHLVDAIDALSKHAPY 120 Query: 123 FPFSLNRFVGSLTSDQQ--------KLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 P G+ + ++ ++ SL+++E V+R + G N ++A ++ IS KT Sbjct: 121 VPSRAAERPGNAAAQERNTVVSRGGRVTSLTQREREVLRLLAQGDSNREVAGQLSISAKT 180 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 V T+++ +M KL S++DL +A RN I Sbjct: 181 VETHRANVMRKLGASSIVDLVHYAIRNGI 209 >UniRef50_C7R398 Two component transcriptional regulator, LuxR family n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R398_JONDD Length = 230 Score = 253 bits (647), Expect = 3e-66, Method: Composition-based stats. Identities = 49/214 (22%), Positives = 103/214 (48%), Gaps = 11/214 (5%) Query: 2 NAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 II+DD L A +R +L I ++AE T G AV +PD+V++D+ +P +G Sbjct: 10 RIIIVDDDALVRAGLRMILGGDPGITVVAEGTHGEEAVSLYAAHQPDVVLMDIRMPVRDG 69 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 + + + R +++++ + + AGA GF+ K +++ A+ A +G+ Sbjct: 70 LSATKDIVTRWPHANVLVLTTFDTDEFIVKALRAGARGFLLKDTSPPDLVRAVNLAGDGH 129 Query: 121 CYFPFSLNRFVGSLTSDQQK----------LDSLSKQEISVMRYILDGKDNNDIAEKMFI 170 S+ + + S++ ++ L+++E+ V + I GK N +I++ +++ Sbjct: 130 PTLSPSVTAQLIAKVSEEPDTGRQRQARRMVEQLTERELDVAQQIAQGKSNQEISQTLYM 189 Query: 171 SNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKIG 204 S TV T+ SR+ K + + + + +G Sbjct: 190 SIPTVKTHISRIFTKFDVDNRVQIAIRMHDAHLG 223 >UniRef50_A5URU4 Two component transcriptional regulator, LuxR family n=3 Tax=Chloroflexi (class) RepID=A5URU4_ROSS1 Length = 242 Score = 253 bits (647), Expect = 3e-66, Method: Composition-based stats. Identities = 52/218 (23%), Positives = 97/218 (44%), Gaps = 16/218 (7%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +IIDDHPL IR L + D+E++ E G A++ E L PD+V++D+++PG+N Sbjct: 5 IRVLIIDDHPLFRQGIRWSLEEAGDMEVVGEAENGQEAIKLAERLVPDVVLVDINLPGLN 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++V +++R+ +I++S D GA + SK +++ I G Sbjct: 65 GLEVARVIKRREPRIGLIVISVYEDDDQLFQAIKVGAAAYSSKDVHPRDLVRMIREVARG 124 Query: 120 YCYFP------FSLNRFVGSLTSD---------QQKLDSLSKQEISVMRYILDGKDNNDI 164 + V + L+ +EI ++ I G N +I Sbjct: 125 KYLINDSVIAKPHVATRVLHQFRELAATEDERTSALFAPLTSREIEILDCIARGLSNKEI 184 Query: 165 AEKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNK 202 A ++ IS +TV + + ++ KL+ +A + Sbjct: 185 ASQLSISGQTVKNHITSILSKLQVNDRTMAVIYAIQRG 222 >UniRef50_Q5WI37 Two-component response regulator n=5 Tax=Bacillaceae RepID=Q5WI37_BACSK Length = 210 Score = 253 bits (647), Expect = 4e-66, Method: Composition-based stats. Identities = 46/208 (22%), Positives = 102/208 (49%), Gaps = 5/208 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ +D + ++ ++ DI++ E +G A++ ET D+ I+D+ +P ++ Sbjct: 2 IKVLLAEDQVMVRQGLKAMIETDEDIKVTGEADDGRKALRLCETHVFDVAILDIRMPEMD 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ + +R R I++++ +DH Y G NG++ K ++I +I++ NG Sbjct: 62 GIEAAKMMRLRYPKMKILMLTTFDDHQYVVESLKLGVNGYMLKNGDTESLIRSIKSTING 121 Query: 120 YCYFPFSLNRF----VGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 + + + SL+ +E +++ I +G +N +IAE++ +S TV Sbjct: 122 GLSLEDQVAAKVVPTLLQNQEEPSIDPSLTPRERAILTCIGEGLNNKEIAERLGLSVGTV 181 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKI 203 S + +KL + L +A R+++ Sbjct: 182 KNQTSHIFDKLALRDRTQLAIYAIRHRL 209 >UniRef50_C4DI56 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DI56_9ACTO Length = 235 Score = 252 bits (646), Expect = 4e-66, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 101/205 (49%), Gaps = 3/205 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDHP+ ++ L + D+ ++AE +G A+ + +PD+V++D+++PG + Sbjct: 5 IRVLVADDHPIVRQGLKTFLDIQPDLSVVAEARDGDEALALIAAHEPDVVLLDLNMPGSD 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G +VL L + +I++++ + AGA GF+ K +++ AI + +G Sbjct: 65 GAKVLTRLAASDHRAKVIVLTSVTEAVRVTEAVAAGAAGFLYKDIDPDSLAQAIRSVADG 124 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 F + + + +L+ +E V+ + G+ N +IA+++ ++ KTV T+ Sbjct: 125 QVIFAREAVTAMTAP--APGPVAALTAREREVLALVAAGRSNREIAKQLSVAEKTVKTHL 182 Query: 180 SRLMEKLECKSLMDLYTFAQRNKIG 204 S L KL +A + + Sbjct: 183 SSLFRKLGVADRTQAALYAVTHGMA 207 >UniRef50_Q52376 Response regulator gacA n=286 Tax=Gammaproteobacteria RepID=GACA_PSEU2 Length = 214 Score = 252 bits (646), Expect = 5e-66, Method: Composition-based stats. Identities = 50/208 (24%), Positives = 105/208 (50%), Gaps = 5/208 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH L I +L + ++++ + G ++++ LKPD+V++DV +PG+ Sbjct: 2 IKVLVVDDHDLVRTGITRMLADIDGLQVVGQADSGEESLKKARELKPDVVLMDVKMPGIG 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + + ++ V+ + + AGA G+++K G+ ++ AI G Sbjct: 62 GLEATRKMLRSHPDIKVVAVTVCEEDPFPTRLLQAGAAGYMTKGAGLAEMVQAIRLVFAG 121 Query: 120 YCYFPFSLNRFVG----SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 Y + + + + D LS++EI + I+ + I++K+ +S KTV Sbjct: 122 QRYISPQIAQQLALKSFQPQVNNSPFDLLSEREIQIALMIVGCQKVQTISDKLCLSPKTV 181 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKI 203 +TY+ R+ EKL S ++L A R+ + Sbjct: 182 NTYRYRIFEKLSISSDVELALLAVRHGM 209 >UniRef50_UPI0001789C57 two component transcriptional regulator, LuxR family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789C57 Length = 225 Score = 252 bits (645), Expect = 5e-66, Method: Composition-based stats. Identities = 48/217 (22%), Positives = 97/217 (44%), Gaps = 14/217 (6%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DD P +R +L + D++++ E G AV PDIV++D+ +PG Sbjct: 7 IRIVLADDQPFIRKGLRYILDIQKDMQVIGEAMTGEEAVDITLRNVPDIVLMDIRMPGGT 66 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI +++ + + +++++ + Y AGA+G++ K + +++ I A G Sbjct: 67 GIMATKSIAEALPNTKVVLLTTFDVEQYVFDGIRAGASGYLLKDTETDELLSGIRAMHRG 126 Query: 120 YCYFPFSLNRFVGSL-------------TSDQQKLDSLSKQEISVMRYILDGKDNNDIAE 166 F S + + L +L+++E V++ + GK N++I+ Sbjct: 127 ATLFNSSTAKRALDQILTSGMQEPDSDSPGKDRLLGALTERETEVLQLLAYGKRNHEISA 186 Query: 167 KMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 + IS T T+ +M+KL A R K+ Sbjct: 187 ILCISEGTTKTHIHHIMQKLGALDRTQAVVTAIRMKL 223 >UniRef50_B4D808 Two component transcriptional regulator, LuxR family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D808_9BACT Length = 212 Score = 251 bits (644), Expect = 8e-66, Method: Composition-based stats. Identities = 41/204 (20%), Positives = 91/204 (44%), Gaps = 5/204 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH + + + LL + +D ++AE + AV +PD+ ++DV +PG + Sbjct: 7 IRLLLVDDHFVVRSGLAMLLAQQDDFAVVAEADDAEQAVAHYRQHRPDVTLMDVRMPGAS 66 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ L+ +R +I+++ + +AGA G++ K + AA+ G Sbjct: 67 GIEALQRIRGEFPDARVIMLTTYDLDEDVFRALEAGAVGYLLKSVRHAELFAAVRKVHAG 126 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 P + + + + LS +E+ + + G N +I + ++ +T + Sbjct: 127 ERCVP----QSLETRCKNGALRSRLSPREVETLDLLARGFSNREIGSALGVTERTAKAHV 182 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 ++ KLE + A + + Sbjct: 183 QAILVKLEAADRAEAVDAAYKRGL 206 >UniRef50_A1ZYF0 DNA-binding response regulator, LuxR family n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZYF0_9SPHI Length = 218 Score = 251 bits (643), Expect = 9e-66, Method: Composition-based stats. Identities = 49/213 (23%), Positives = 107/213 (50%), Gaps = 10/213 (4%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + I DDH L + +L ++IE++ G + +V+ PD++++D+ +P ++ Sbjct: 3 VKVAIADDHVLFRKGLVTILELDDNIEVVYGADNGKELIDKVDAQPPDVILMDLKMPVMD 62 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + ++ + ++++S ++ + HC + GANG++ K + ++ AI Sbjct: 63 GMEATKIIKAKYPEVKVLVLSMYDEEKFIIHCLELGANGYLLKNTDPDELVHAIGTVMAK 122 Query: 120 YCYFPFSLNRFVGSLTSDQQKLD---------SLSKQEISVMRYILDGKDNNDIAEKMFI 170 YF ++ + + +++ L+K+E V+ I ++AEK+FI Sbjct: 123 DFYFNNHISTVMLKGLNQKKRAKGKPQFENSIELTKREQEVLELICKELTTPEMAEKLFI 182 Query: 171 SNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 SN+TV ++ L+EK K+ L FA +N++ Sbjct: 183 SNRTVEGHRKNLLEKTGAKNTAGLVVFALKNEL 215 >UniRef50_D1BGN7 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=4 Tax=Actinomycetales RepID=D1BGN7_SANKS Length = 258 Score = 251 bits (643), Expect = 9e-66, Method: Composition-based stats. Identities = 44/215 (20%), Positives = 96/215 (44%), Gaps = 12/215 (5%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DD L + I ++ ++ +E++ + +G AV+ V+ L PD+V++DV +P ++ Sbjct: 34 IRVLLVDDQELFRSGIAVIVDAQDGLEVVGQAADGSEAVRMVDDLSPDVVLMDVRMPELD 93 Query: 60 GIQVLETL------RKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAI 113 G++ + R +I+++ + GA+GF+ K + AI Sbjct: 94 GVEATRQIFAPARAASRAGPVRVIVLTTFDLDDRAAAAIRYGASGFLLKDATPAMLRDAI 153 Query: 114 EAAKNGYCYFPFS-----LNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKM 168 G L+ + L+ L+ +E V+ + G +N +IA + Sbjct: 154 RTVHAGNAVLAPDDLSTLLDGRFRARRPSPPGLEDLTPKEREVLAAVAAGLNNAEIARRA 213 Query: 169 FISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 F+S TV T+ ++ KL + + + A + + Sbjct: 214 FVSESTVKTHVGAVLRKLGLRDRVQVVVLAHEHGL 248 >UniRef50_C7NKN7 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=138 Tax=Bacteria RepID=C7NKN7_KYTSD Length = 244 Score = 251 bits (643), Expect = 1e-65, Method: Composition-based stats. Identities = 52/221 (23%), Positives = 104/221 (47%), Gaps = 22/221 (9%) Query: 2 NAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 ++DD L A R +L + D+ ++ E +G SAV +++T+ D+V++D+ +P ++G Sbjct: 4 RIFLVDDQSLVRAGFRMVLDAQPDMSVVGEAPDGQSAVDQLKTIAADVVLMDIRMPRLDG 63 Query: 61 IQVLETL--RKRQY---SGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEA 115 I+ L R + +++++ + Y +AGA+GF+ K G ++AAI A Sbjct: 64 IEATRVLLGRDKHPGGAEPKVVVLTTFDMDEYAYAALEAGASGFLLKDAGPEELLAAIRA 123 Query: 116 AKNGYCYFPFSLNRFVGSLT----------------SDQQKLDSLSKQEISVMRYILDGK 159 +G S + + + + L+++E V + G Sbjct: 124 VASGDAVVAPSTTKRLLERFVPTLTPEVADVASPAEQQEYLREVLTEREYEVFEAVAAGL 183 Query: 160 DNNDIAEKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQR 200 N +IA+++F++ T+ T+ RL+ KL C+ + L A Sbjct: 184 SNTEIAKELFVAEATIKTHIGRLLFKLGCRDRVQLVITAYE 224 >UniRef50_C7RMN3 Two component transcriptional regulator, LuxR family n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RMN3_9PROT Length = 213 Score = 251 bits (642), Expect = 1e-65, Method: Composition-based stats. Identities = 52/204 (25%), Positives = 107/204 (52%), Gaps = 3/204 (1%) Query: 3 AIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGI 61 +++DDH + +R LL + +D+E+++E A+ + + D+ ++D+ +PG G+ Sbjct: 8 ILLVDDHAVVRGGLRLLLAQTDDMEVVSEAENAEQAISMIRQNEFDVALVDIGLPGKGGL 67 Query: 62 QVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 121 +L+ ++ + ++++S + Y AGA+G+++K ++AAI G Sbjct: 68 DLLKQIKAERPRIAVLMLSMYAEEVYAVRALKAGASGYLTKNSPPGTLLAAIRKVAGGGR 127 Query: 122 YFPFSLNRFVGSLTSDQQK--LDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 + +L + +K D+LS +EI V+R + G+ IAE + +S KTV+TY+ Sbjct: 128 HVSPALLEQLAVEVGQGRKSASDALSDREIEVLRRLASGESLTQIAEALHLSPKTVTTYR 187 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 +R++EK S +L +A + Sbjct: 188 ARIVEKTGLHSNAELTRYALDKGM 211 >UniRef50_B9XAM6 Two component transcriptional regulator, LuxR family n=2 Tax=Bacteria RepID=B9XAM6_9BACT Length = 209 Score = 251 bits (642), Expect = 1e-65, Method: Composition-based stats. Identities = 46/204 (22%), Positives = 94/204 (46%), Gaps = 5/204 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I DDH + + L+ + D+E++AE +G A++ PD+ ++D+ +P + Sbjct: 7 IRILIADDHYVVRMGLIALVNTEPDMEVVAEAADGAQALELFAKCNPDLALMDLRMPVKS 66 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+Q +R R + +++++A + AGA G+V K +I A+ A G Sbjct: 67 GVQATLEIRNRFATACVLMLTAFDGDEDIHKALQAGAQGYVLKSSTGEKLIPALRAVAAG 126 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 + P + + + + LS +E+ V+ + G N +IA+ + I+ T + Sbjct: 127 QRWIPKEVANRLAL----RNSFEQLSPREVQVLSELARGLANKEIADVLNITEHTTKDHL 182 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 ++ KL + T A + I Sbjct: 183 KSILAKLRVADRTEAVTVALQRGI 206 >UniRef50_Q1QVM5 Two component transcriptional regulator, LuxR family n=29 Tax=Gammaproteobacteria RepID=Q1QVM5_CHRSD Length = 214 Score = 251 bits (642), Expect = 1e-65, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 115/206 (55%), Gaps = 3/206 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH L +I +L ++ ++++AE +G AV L+PDIV++D+ +PG+ Sbjct: 2 IKVLVADDHHLVRTSIARMLDSEDGLKVIAEAVDGEEAVNMARELRPDIVLMDIRMPGIG 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + + ++IV+A + + + DAGA GF+SK ++ ++ AI A +G Sbjct: 62 GLEATRKIMRGMSDIKVVIVTAFLEEAFAQRLMDAGAAGFISKGTELDEMVRAIRAIFDG 121 Query: 120 YCYFPFSLNRF--VGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 Y + + + + + D LS +E+ V I++ + +DI++++F+S KTV+T Sbjct: 122 QRYISPDIAQKVVLSKMGTQDNPFDQLSHRELQVAMMIVNCQKVSDISDRLFLSPKTVNT 181 Query: 178 YKSRLMEKLECKSLMDLYTFAQRNKI 203 Y+ R+ EKL +S ++L R + Sbjct: 182 YRYRIFEKLNVQSDVELTHLGLRYGL 207 >UniRef50_UPI0001789139 two component transcriptional regulator, LuxR family n=2 Tax=Bacillales RepID=UPI0001789139 Length = 216 Score = 250 bits (641), Expect = 2e-65, Method: Composition-based stats. Identities = 45/211 (21%), Positives = 96/211 (45%), Gaps = 11/211 (5%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVET-LKPDIVIIDVDIPGV 58 ++ +I DD P +++ L+ + DIE+ A G A+ + L D+V++D+ +P Sbjct: 2 ISVLIADDDPFIRESLKLLVGMDPDIEVSAVAEHGEEALSLLMDGLHADVVLMDIRMPVC 61 Query: 59 NGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKN 118 +G++ +R+R +++++ +D Y GA+G++ K + II I+ + Sbjct: 62 DGVEGTRRIRERYPDVRVLMLTTFDDDDYIVEALRNGASGYLLKNIPPDRIIQGIKTVHD 121 Query: 119 GYCYFPFSLNRFVGSLTSDQQKLDS---------LSKQEISVMRYILDGKDNNDIAEKMF 169 G + R + + + L+ E V+ I +G N +IA +++ Sbjct: 122 GNMLIHPDIARKLTGMLRPTPQPVPRSAELEQFGLTPAEKRVVALIAEGLSNKEIAAQLY 181 Query: 170 ISNKTVSTYKSRLMEKLECKSLMDLYTFAQR 200 +S TV Y + ++ KL + + F + Sbjct: 182 LSEGTVKNYVTEILGKLNLRDRTQIAIFYLK 212 >UniRef50_P94439 Uncharacterized transcriptional regulatory protein yfiK n=4 Tax=Bacillales RepID=YFIK_BACSU Length = 220 Score = 250 bits (641), Expect = 2e-65, Method: Composition-based stats. Identities = 47/216 (21%), Positives = 104/216 (48%), Gaps = 13/216 (6%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + II DD + + +LL + +++++A G A ++ + L+PDIV++D+ +P N Sbjct: 2 IKIIITDDQDIVREGLASLLQLREELDVIATARNGQEAFEKAKELEPDIVLMDIRMPVSN 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + + S +++++ D + GA+G++ K + I+ A+ +G Sbjct: 62 GVEGTKLITSSLPSVKVLMLTTFKDSALIAEALEEGASGYLLKDMSADTIVKAVMTVHSG 121 Query: 120 YCYFPFSLNRFVGSLTSDQQKLD------------SLSKQEISVMRYILDGKDNNDIAEK 167 P L + + +++L L+++EI V+ + G +N +IAEK Sbjct: 122 GMVLPPELTAQMLNEWKREKQLKGINEIEKPNELLDLTEREIEVLAELGYGLNNKEIAEK 181 Query: 168 MFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 ++I+ TV + S ++ KL + ++ R + Sbjct: 182 LYITEGTVKNHVSNIISKLAVRDRTQAAIYSVRYGV 217 >UniRef50_B8CN77 Nitrate/nitrite DNA-binding response regulator, putative n=2 Tax=Shewanella RepID=B8CN77_SHEPW Length = 206 Score = 250 bits (641), Expect = 2e-65, Method: Composition-based stats. Identities = 54/204 (26%), Positives = 111/204 (54%), Gaps = 2/204 (0%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDHPL +R L +DIE+LAE G A++ + + D+V+ D+++P ++ Sbjct: 2 IRVLLVDDHPLFREGLRYRLSLDSDIEVLAEADNGQQALEILNKMPVDLVLTDINMPQMD 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ +LE +++++ S ++++S ++ Y GA+G++ K +I AI+ G Sbjct: 62 GMYLLELIKEQELSCKVVMLSMHDNKEYIMATMRYGADGYILKDVPGKELIEAIKKVAAG 121 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 YF + + + ++ ++++E V+R I G +N IA++M +S +TV T+K Sbjct: 122 KRYFSADVINTLSQELASGKQ-ALVTQREQLVLRLISLGMNNKRIAQEMDVSVRTVETHK 180 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 + +KL S L +A + + Sbjct: 181 RNIKQKLMIDSTAGLVRYAIDHGL 204 >UniRef50_A6TVR4 Two component transcriptional regulator, LuxR family n=5 Tax=Firmicutes RepID=A6TVR4_ALKMQ Length = 208 Score = 250 bits (641), Expect = 2e-65, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 105/206 (50%), Gaps = 5/206 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 M +I+DD L +++ L+ + D ++ + G A + + PD++++D+ +P ++ Sbjct: 1 MKVLIVDDDALIRDSLKILIDLEADFTVVGTASNGQEAFEFCKEYAPDLILMDIRMPIMD 60 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ + +++ S III++ D Y K GA G++ K + ++II ++ G Sbjct: 61 GVLATKMIKESFGSIRIIILTTFKDDQYIKEALKNGAQGYILKSQSADSIIESLRTVSKG 120 Query: 120 YCYFPFSLNRFVGSLTSDQQKLD----SLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 F + + S+ ++++ L+++E +++++ +G N +I+ +++S TV Sbjct: 121 NVVFETEIASVLTSMLKEEKEKHHLDLQLTEREHEIIKWVGEGLSNREISAALYLSEGTV 180 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRN 201 Y ++L+EKL + L F + Sbjct: 181 RNYVTQLLEKLNVRDRTQLAIFYLKY 206 >UniRef50_C1TL62 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TL62_9BACT Length = 217 Score = 250 bits (641), Expect = 2e-65, Method: Composition-based stats. Identities = 52/209 (24%), Positives = 102/209 (48%), Gaps = 5/209 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++IDDH L ++ LL + D + E ++G + ++ +PD+V++D+ +P ++ Sbjct: 4 IRMVLIDDHKLFRDGMKKLLEMEPDFSLEGEASDGIEGLALIKRSRPDVVLLDIGMPNLD 63 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI ++ LR + + + ++A ND + G +GFV K G +++AI + G Sbjct: 64 GIGLIRELRSTEQNTKFVAITAFNDERKLSELSSVGVHGFVLKSSGRTELLSAIRSVARG 123 Query: 120 YCYFPFSLNRFVGSLTS----DQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 CY + + + L L+ +E V+ ++ G N +I+ KM +S KTV Sbjct: 124 QCYVDPKVAGLLLGAFHKKQDEADMLCDLTDREKEVLFWLAQGLSNLEISAKMNLSEKTV 183 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKIG 204 + S +++KL+ + A R I Sbjct: 184 KNHVSHILKKLDLRDRTQAAILAWRVGIA 212 >UniRef50_B6A2W0 Two component transcriptional regulator, LuxR family n=47 Tax=Proteobacteria RepID=B6A2W0_RHILW Length = 223 Score = 250 bits (640), Expect = 2e-65, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 102/205 (49%), Gaps = 2/205 (0%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ID+HPL + ++ +L + IE+ + + ++P +V++D+++P ++ Sbjct: 7 IRVLLIDNHPLVLDGLKAVLETFDHIEVAGTAGLAQTGLDIARQIQPQVVLMDINMPKLS 66 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI +E R ++++S + Y GA G+V K + I+AAIE +G Sbjct: 67 GIDAIELFRNEFPEIRVVMLSMHDSREYISSSVMHGAAGYVLKDVSTDEIVAAIETVADG 126 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 YF + + +++ D L+ +E ++ I+ G+ N +IAE + IS+ T T++ Sbjct: 127 GTYFSSGVFDALMGERAEEGS-DPLTPREHDILGLIVAGRSNREIAEVLGISSATAETHR 185 Query: 180 SRLMEKLECKSLMDLYTFAQRNKIG 204 L +KL + L +A + I Sbjct: 186 KNLKKKLGIATTAGLIRYALDHGIA 210 >UniRef50_D2SFS4 Two component transcriptional regulator, LuxR family n=2 Tax=Frankineae RepID=D2SFS4_9ACTO Length = 220 Score = 250 bits (640), Expect = 2e-65, Method: Composition-based stats. Identities = 42/202 (20%), Positives = 96/202 (47%), Gaps = 1/202 (0%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 ++ +++DDH L + L+ D+ ++ +G AV+ V L P +V++D+ +P ++ Sbjct: 2 IDVLVVDDHALMRTGLSGLIAAAGDMRVVGTAADGAEAVEEVARLAPHVVLMDLSMPVLD 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ + + S ++++++ +D DAGA G+V K +++AAI + G Sbjct: 62 GVAATRRIVEEHPSVEVLVLTSFSDRQRVIEALDAGAGGYVLKDTEPADLLAAIRSTARG 121 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 + + R V + L+++E V+ + G N IA ++ I TV + Sbjct: 122 HSPLDPRVARTVLHARRSPVRAAELTEREQEVLALVGHGLANKQIARRLGIRESTVKAHL 181 Query: 180 SRLMEKLECKSLMDLYTFAQRN 201 + + +++ + +A+ + Sbjct: 182 TSVFQRIGVRDRTSATLWARTH 203 >UniRef50_Q13QW9 Two component transcriptional regulator, LuxR family n=5 Tax=Burkholderia RepID=Q13QW9_BURXL Length = 220 Score = 250 bits (639), Expect = 3e-65, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 103/206 (50%), Gaps = 3/206 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 ++ +++DDH + R LL D+ + E + A QR L+PD+V++DV +PG + Sbjct: 6 ISVLLVDDHAVVREGYRRLLELNADVHVCGEAADAAQAYQRFCALRPDVVVMDVSLPGAS 65 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ + + R+ ++I S + + + DAGA G+V+K + ++ A+ Sbjct: 66 GIEAMRRMLAREPDARVLIFSVHEEAIFVRRALDAGALGYVTKASAPDVLVEAVRTIARR 125 Query: 120 YCYFPFSLNRFVG--SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 Y +++ + + S+ LS +E V+R ++ G IAEK+ +S KTV+ Sbjct: 126 AGYLSPDISQALALRNAFSEGPPGRQLSAREFEVLRLLVQGYTLPSIAEKLGLSQKTVAN 185 Query: 178 YKSRLMEKLECKSLMDLYTFAQRNKI 203 ++S + +K + + L A R + Sbjct: 186 HQSVIRQKFGADNGVQLAQMASRLGL 211 >UniRef50_B9E7V9 Two-component response regulator n=65 Tax=Staphylococcaceae RepID=B9E7V9_MACCJ Length = 210 Score = 250 bits (639), Expect = 3e-65, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 105/205 (51%), Gaps = 2/205 (0%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLK-PDIVIIDVDIPGV 58 M+ I++DDH + ++ LL + ++A+ G ++ ++ + PD++I+D+ +P + Sbjct: 4 MDIILVDDHHIVRQGMKFLLSTEASFNVIADFNNGRELLEHLDETQLPDLIIMDLVMPEL 63 Query: 59 NGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKN 118 NGI+ ++ + ++++S+ D + DAGA+G+ K +I I+ Sbjct: 64 NGIEATRRIKAKYPDVKVLVLSSFIDEEHVLGVMDAGADGYEMKDSEPKALINTIKQIAA 123 Query: 119 GYCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTY 178 G F + + S + + LSK+E+ V++ + +G N +IAEK+F+S KTV T+ Sbjct: 124 GEQIFHPDVMKVRKSGMNLAHLRNPLSKRELEVLKAMSEGLTNKEIAEKLFVSEKTVKTH 183 Query: 179 KSRLMEKLECKSLMDLYTFAQRNKI 203 S + KLE + + K+ Sbjct: 184 VSHIFAKLEVGDRTQASMYGVKYKL 208 >UniRef50_C6E3E1 Two component transcriptional regulator, LuxR family n=4 Tax=Deltaproteobacteria RepID=C6E3E1_GEOSM Length = 223 Score = 250 bits (639), Expect = 3e-65, Method: Composition-based stats. Identities = 54/212 (25%), Positives = 104/212 (49%), Gaps = 10/212 (4%) Query: 2 NAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 +I+DDHPL +++L+ ++ + + + E G A+ + LKPD+V +DV +P ++G Sbjct: 5 RVLIVDDHPLFREGVKSLVERSANYQAVGEAGCGAEALALAQELKPDLVTMDVSLPDMSG 64 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 I+V+ + I+++S Y AGA G+V K+ +I +A G Sbjct: 65 IEVVRGILDLAPETRILMLSMYPKFDYVAEAFKAGAKGYVVKETTTARLIQGFDALCRGE 124 Query: 121 CYFPFSLNRFVGSLTSDQQKLDS---------LSKQEISVMRYILDGKDNNDIAEKMFIS 171 + +++ + + + D L+ +E V+R + +G IA + +S Sbjct: 125 FFVDGQVSQDLVAKLAQGAARDQALQDEKYGLLTPREQQVLRLVAEGSSTRQIAAAIELS 184 Query: 172 NKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 KTV +++ LM+KL+ S M+L +A R + Sbjct: 185 PKTVENHRTNLMKKLDVHSKMELVKYAARLGL 216 >UniRef50_A5WFD3 Two component transcriptional regulator, LuxR family n=3 Tax=Psychrobacter RepID=A5WFD3_PSYWF Length = 211 Score = 250 bits (639), Expect = 3e-65, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 113/207 (54%), Gaps = 4/207 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH L I +L +IE++ E G +A++ V+ L PD+V++DV++P + Sbjct: 2 IKVLVVDDHDLVRMGISRMLADDPEIEVIGEADSGEAAIRMVKALSPDVVLLDVNMPNIG 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + LR+ I+ VS+ + Y AG NG+++K ++ +I AI+ G Sbjct: 62 GVETTKRLRQFDEKVKILAVSSVSSQPYPSMLLKAGVNGYITKGTPLDEMIKAIKKVYQG 121 Query: 120 YCYFPFSLNRFVGSLT---SDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 YF + + + +++ D LS++E V +++ + IA+++F+S KTV+ Sbjct: 122 SKYFSSDVAEQLADMLLTDNEESPFDRLSEREKQVAMMVVNCQSPQQIADQLFVSVKTVN 181 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKI 203 TY+ R+ EK+ S + L A R+ + Sbjct: 182 TYRYRIFEKVGVDSDVKLTHLAMRHGL 208 >UniRef50_B1Y1Z3 Two component transcriptional regulator, LuxR family n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y1Z3_LEPCP Length = 235 Score = 250 bits (639), Expect = 3e-65, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 105/206 (50%), Gaps = 4/206 (1%) Query: 3 AIIIDDHPLAIAAIRNLLIKNDI-EILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGI 61 +I+DDH + ++ +L ++AE + G A++ + D+ I+D+ +PG+NG+ Sbjct: 15 ILIVDDHVIVREGLQRILEATGAGWVVAEASSGFQALEVMRHQPIDLAIVDLSMPGMNGL 74 Query: 62 QVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 121 +++ +R ++++S + Y AGANG+V+K ++ A+ G Sbjct: 75 DLIKRIRTEFPRVRVLVLSMHAEEQYAMRAFKAGANGYVTKDGASAELVNAVRKVATGGA 134 Query: 122 YFPFSLNRFV---GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTY 178 Y SL V + + LS +E+ V+R I+ G+ DIAE + +S KTVST+ Sbjct: 135 YVTASLAERVVLQLNGATTAPGHAQLSDRELEVLRRIVAGERITDIAEALHLSVKTVSTH 194 Query: 179 KSRLMEKLECKSLMDLYTFAQRNKIG 204 KSR+ EKL+ ++ L + + + Sbjct: 195 KSRIQEKLQLPTMAALIRYGMAHGLA 220 >UniRef50_A1WT06 Two component transcriptional regulator, LuxR family n=1 Tax=Halorhodospira halophila SL1 RepID=A1WT06_HALHL Length = 216 Score = 250 bits (639), Expect = 3e-65, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 102/207 (49%), Gaps = 4/207 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH L AI +L DI+I+A AV V +PD+V++D+ +PG+ Sbjct: 2 IRVVLADDHRLIRQAIDGMLRDIPDIQIVAHAENAEHAVAAVREQEPDVVLMDLQMPGMG 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + L + +I ++ Y H AGA G+V K + +I AI + G Sbjct: 62 GVEAIRRLYRSHPKVGVIALTVYQSGPYPAHALRAGAKGYVHKGADRDELIEAIRSVYLG 121 Query: 120 YCYFPFSLNRFVGSLT---SDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 Y + R V + + + D L+ +E V+ IL+G+ IA+ + +S KTVS Sbjct: 122 RRYICHEVARHVALNSLDGTGESPFDHLTPREFEVLMRILNGQRGTSIAKDLCLSPKTVS 181 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKI 203 TY+SR+ E+L ++ L A + Sbjct: 182 TYRSRIFERLGVRNDAQLTRIAIDYGL 208 >UniRef50_B8GSX5 Response regulator receiver protein n=2 Tax=Ectothiorhodospiraceae RepID=B8GSX5_THISH Length = 220 Score = 249 bits (638), Expect = 4e-65, Method: Composition-based stats. Identities = 61/210 (29%), Positives = 113/210 (53%), Gaps = 7/210 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK----NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIP 56 ++ +++DDH L IR LL + I+++ E G A+ + LKPD+V++D+++P Sbjct: 2 IDVLLVDDHELVRMGIRGLLDERAAVTGIQVVGEAHSGEEALVEAKRLKPDVVLMDINMP 61 Query: 57 GVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAA 116 G+ G+ + + Q S +++++A ++ + +AGA+G+++K + +IAAI+ A Sbjct: 62 GIGGLVATRRIVEAQPSVKVLVLTAMDEGPVPRWVLEAGASGYLTKGCRIEEMIAAIQGA 121 Query: 117 KNGYCYFPFSLNRFVG---SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 G + ++ + + D LS +E ++ IL G+ IA + IS K Sbjct: 122 MQGERHISPAVAQRLALGGLAKGQANPFDELSGRERQILLMILQGQTPQAIATALNISPK 181 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TVSTYK R+M KL + M L T A ++ + Sbjct: 182 TVSTYKCRVMGKLGISNDMQLVTLAAQHGL 211 >UniRef50_B8GUD1 Two component transcriptional regulator, LuxR family n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GUD1_THISH Length = 227 Score = 249 bits (638), Expect = 4e-65, Method: Composition-based stats. Identities = 46/209 (22%), Positives = 100/209 (47%), Gaps = 7/209 (3%) Query: 2 NAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGI 61 ++IDDH L ++ LL ++ I+ + + +G + + L PD++++D+ +P +NG+ Sbjct: 4 RVLLIDDHTLFREGLQELLKRHGIDTVGAVGDGETGIDLARDLLPDVILLDMRMPAMNGL 63 Query: 62 QVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 121 +VL LR+ I++++ + C GA G++ K+ +++ A+E G Sbjct: 64 EVLRRLRQAGLKMPIVMLTTSTEEQDLVECLRNGAQGYLLKEMEPGDLVDALEEILQGKT 123 Query: 122 YFPFSLNRFVG-------SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 L + + S ++ D L+ +E ++ + +G+ N IA + IS+ T Sbjct: 124 VVAPDLAQLLVRVVQGKSSSANEPSPFDELTPREGEILALLAEGQSNKVIARNLGISDGT 183 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 V + ++ KL S ++ A + + Sbjct: 184 VKLHVKAILRKLGVHSRVEAAVLAVQQGL 212 >UniRef50_B4D2I0 Two component transcriptional regulator, LuxR family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D2I0_9BACT Length = 209 Score = 249 bits (638), Expect = 4e-65, Method: Composition-based stats. Identities = 53/204 (25%), Positives = 94/204 (46%), Gaps = 5/204 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDH + + L ++ D EI+AE G A+ + +PD+ ++D +P + Sbjct: 6 IRLMLADDHFMVRMGLATSLKLEPDFEIVAEADTGKEAISFYQHHRPDVALLDCRLPDMT 65 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+V + LR + I+I+SA N AGA ++ K I+ AI G Sbjct: 66 GIEVTQALRAADATARILILSAFNGEEDVFRAVQAGAESYLLKNARRTEIVTAIRTVHAG 125 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 YFP ++ + + + L+ +E SV+ I+ G N +I + I+ V + Sbjct: 126 SPYFPPEISAILAARMRR----EELTPREKSVLFEIVKGSSNKEIGCCLEITESAVKIHV 181 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 + L++KL K T A + I Sbjct: 182 THLLQKLNAKDRTHAATIAIQRGI 205 >UniRef50_Q46VQ7 Regulatory protein, LuxR:Response regulator receiver n=32 Tax=Betaproteobacteria RepID=Q46VQ7_RALEJ Length = 231 Score = 249 bits (638), Expect = 4e-65, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 103/205 (50%), Gaps = 5/205 (2%) Query: 2 NAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVET----LKPDIVIIDVDIP 56 ++IDDH L +R L ++ D+ ++ E G +A+ +E +PD+VI D+ + Sbjct: 20 RVLLIDDHALVRDGMRMHLTLQPDLYVVGEADGGEAALAWLERAGARERPDLVITDIGMR 79 Query: 57 GVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAA 116 G+ GI + L ++ +++VS ++ Y + AGA G+V K + ++AAIEA Sbjct: 80 GMGGIALTAALHEQYPEIAVLVVSMHDNLEYARQAVRAGARGYVLKDAPADELMAAIEAV 139 Query: 117 KNGYCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 G ++ + R + LD+L+++E ++ I G N +IA ++ +S +TV Sbjct: 140 LAGRVFYSARIARGMAEQMPATGPLDALTRRERDILGCIGRGMANKEIATQLGVSVRTVE 199 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRN 201 T++ L KL + L +A Sbjct: 200 THRLNLKRKLGIEGRAGLVKYAVEQ 224 >UniRef50_C1B8T3 NarL family two-component response regulator n=61 Tax=Bacteria RepID=C1B8T3_RHOOB Length = 276 Score = 249 bits (638), Expect = 4e-65, Method: Composition-based stats. Identities = 50/196 (25%), Positives = 94/196 (47%), Gaps = 4/196 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDI-PGV 58 + ++ DDH + A +R LL ++DIE++ E +AV T D+V++D+ PG Sbjct: 2 IRLLLADDHAIVRAGLRALLEHEDDIEVVGEAATADAAVALCATTPVDLVLMDLRFGPGT 61 Query: 59 NGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKN 118 +G+ LR +++V+ + AGA G++ K ++AA+ AA Sbjct: 62 SGVDATRNLRSLPNPPHVLVVTNYDTDADILDAVAAGAAGYLLKDTPPPELLAAVRAASA 121 Query: 119 GYCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTY 178 G ++ + + ++ SLS +EI V+ + G+ N +I +++F+S TV ++ Sbjct: 122 GDSVLSPAVASKLMTRV--RRPATSLSPREIQVLTLVAAGRSNREIGKELFLSETTVKSH 179 Query: 179 KSRLMEKLECKSLMDL 194 + KL KS Sbjct: 180 LVHIFGKLGVKSRTSA 195 >UniRef50_C5T9P3 Two component transcriptional regulator, LuxR family n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T9P3_ACIDE Length = 239 Score = 249 bits (637), Expect = 4e-65, Method: Composition-based stats. Identities = 58/202 (28%), Positives = 99/202 (49%), Gaps = 1/202 (0%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDHPL +R L I + E G ++ L PDIV+ D+ +P + Sbjct: 5 IRILLVDDHPLVRDGVRMRLEATEHICVAGEAASVGESLPLAHALAPDIVLTDIRMPAAS 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI + R++ ++++S +D Y + GA G+V K +I AIEA G Sbjct: 65 GIHLAAVFREQFPRVRVLVLSMHDDAEYVRRAVSLGARGYVLKDAPAQQLIEAIEAVHQG 124 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 CYF L + + S + SL+ +E SV++++ +G+ N +IA M S +TV T++ Sbjct: 125 GCYFSPGLEQLLDDAGSVARSNRSLTPREASVLQWVSEGRSNKEIAALMGTSVRTVETHR 184 Query: 180 SRLMEKLECKSLMDLYTFAQRN 201 L KL + L +A + Sbjct: 185 LHLRRKLRIEGQAALMKYAVDH 206 >UniRef50_C7QC31 Two component transcriptional regulator, LuxR family n=95 Tax=Actinobacteria (class) RepID=C7QC31_CATAD Length = 236 Score = 249 bits (637), Expect = 4e-65, Method: Composition-based stats. Identities = 46/215 (21%), Positives = 89/215 (41%), Gaps = 12/215 (5%) Query: 2 NAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 ++ DD L A +R ++ + + ++ E G AV+ + D+V++D+ +PG++G Sbjct: 15 RVVLADDQDLVRAGLRLMIDRAPGLAVVGEAATGHDAVRIAREARADVVLMDIRMPGLDG 74 Query: 61 IQVLETLRKRQY--SGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKN 118 + + ++I++ Y +GA+GF+ K + +I AI Sbjct: 75 LAATRRIAADDSLAGVRVLILTTFEVDDYVFEALRSGASGFLGKGARPDALIDAIRTVAR 134 Query: 119 GYCYFPFSLNRFVG---------SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMF 169 G S R + L +L+ +E + + DG N DIA ++ Sbjct: 135 GDALLSPSATRGLIARFLSLQDTEPVHPSPLLTTLTDRERELTALVADGMSNTDIARQLT 194 Query: 170 ISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKIG 204 +S TV T+ + M KL + L A + + Sbjct: 195 LSPLTVKTHVNHAMTKLGARDRAQLVVLAYQTGLA 229 >UniRef50_B4D831 Two component transcriptional regulator, LuxR family n=2 Tax=Verrucomicrobia RepID=B4D831_9BACT Length = 209 Score = 248 bits (636), Expect = 6e-65, Method: Composition-based stats. Identities = 48/204 (23%), Positives = 91/204 (44%), Gaps = 5/204 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I+DDH + + + + D+ ++ E G +++ +PD+V +D +PG + Sbjct: 5 IRVLIVDDHAMMRLGLVEAIAGERDLTLVGEAANGTQCLEQYRKHQPDVVTMDFRLPGAD 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G + LR ++++S +AGA G+VSK + ++ AI G Sbjct: 65 GAESTAHLRTEFPDARVVVLSVFEGEEDIWRAVEAGAMGYVSKSAEVEEVLEAIRCVVGG 124 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 YFP + + S + D+L+ +E V+ +I+ G N +IA + +S TV + Sbjct: 125 ETYFPAPIASKLASRRTR----DALTPREHQVLHHIVAGLSNKEIAAALHMSEATVKLHI 180 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 S + KL A + I Sbjct: 181 SNTLAKLHVADRTQAAIVAVQRGI 204 >UniRef50_Q027R2 Two component transcriptional regulator, LuxR family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q027R2_SOLUE Length = 247 Score = 248 bits (636), Expect = 6e-65, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 105/221 (47%), Gaps = 18/221 (8%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DDHP+ + LL + D E++A+ +G + ++ +PDI+++D+ +PG++ Sbjct: 23 IRIVVADDHPIFRDGLCRLLALEEDFEVVAQAQDGRQVLDVLQQHEPDILLLDLKMPGLD 82 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ L+ L+ + +I+++A +D G +G V K+ +I +I G Sbjct: 83 GLATLQRLQIAKNKTRVIVLTASDDKNEFVQAMKLGTSGIVLKQTATELLIKSIRKVHAG 142 Query: 120 YCYFP-----------------FSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNN 162 + ++ + + +++ LS++E ++ + G N Sbjct: 143 EIWLDSHTTAAVIRQFVANDETPAMAAPSQAPPTRERERSPLSQREREIVALVAQGFKNK 202 Query: 163 DIAEKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 ++AEKMFIS +TV + + +KL ++L +A N + Sbjct: 203 EMAEKMFISEQTVKNHLHNIFDKLGVSDRLELALYAIHNNL 243 >UniRef50_D2AUN6 Response regulator receiver protein n=38 Tax=Actinomycetales RepID=D2AUN6_STRRD Length = 226 Score = 248 bits (636), Expect = 6e-65, Method: Composition-based stats. Identities = 44/213 (20%), Positives = 101/213 (47%), Gaps = 10/213 (4%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DD + A +R +L +IE++AE +G A+ V + +PD+V++D+ +P ++ Sbjct: 2 IRVLLADDEAMIRAGVRAILAADPEIEVVAEAGDGREAIDLVLSHRPDVVLLDIRMPRMD 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ + LR+ +++++ + Y GA GF+ K ++A I A G Sbjct: 62 GLAAVAELRRVAPGTAVVMLTTFGEDDYIARALGEGAGGFLLKSGDPRELLAGIHAVAEG 121 Query: 120 YCYFPFSLNRFVGSLT---------SDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFI 170 Y + V + + ++++ +L+ +E V+ + +G N IA ++++ Sbjct: 122 AAYLSPRVAHRVITQLTGGRMTRVVAAREQVAALTPRERDVLALVGEGLSNGQIARRLYL 181 Query: 171 SNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TV + S ++ +L ++ + A + Sbjct: 182 VEGTVKAHVSAILTRLGARNRVQAAILAHEAGL 214 >UniRef50_A1VT42 Two component transcriptional regulator, LuxR family n=7 Tax=cellular organisms RepID=A1VT42_POLNA Length = 224 Score = 248 bits (636), Expect = 6e-65, Method: Composition-based stats. Identities = 51/208 (24%), Positives = 97/208 (46%), Gaps = 5/208 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETL----KPDIVIIDVDI 55 + I++DDHP +R L +DI ++ E A+Q L P IV+ D+ + Sbjct: 5 IRLILVDDHPFVRDGVRMRLEATDDIRVVGEAGSVDEAMQLATDLGDERAPHIVLTDISM 64 Query: 56 PGVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEA 115 G++GI++ + R ++++S N+ Y K ++GA G+V K ++ AI A Sbjct: 65 RGMSGIELAALFQHRFPGIDVLVLSMHNNLEYVKRAIESGAKGYVLKDAPAQELVNAIRA 124 Query: 116 AKNGYCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 G +F L ++ + L+ +E + + ++ G N IA ++ +S +TV Sbjct: 125 VHAGETFFSPELQQYTEGFRASSGGNSPLTPKESATLAWLACGYSNKQIARELSMSVRTV 184 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKI 203 T++ L KL +L +A + + Sbjct: 185 ETHRLNLRRKLRITGQAELVKYAIDHML 212 >UniRef50_Q60AR8 DNA binding response regulator, LuxR family n=1 Tax=Methylococcus capsulatus RepID=Q60AR8_METCA Length = 215 Score = 248 bits (636), Expect = 7e-65, Method: Composition-based stats. Identities = 49/208 (23%), Positives = 100/208 (48%), Gaps = 5/208 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH + A R LL +IE++ E G A Q +PD++++D+ +PG+ Sbjct: 5 ITVMLVDDHAVVRAGYRLLLSGTPNIEVVGEAERGEEACQLYADTRPDVIVMDLSLPGIG 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ + +R R S I++ S ++ Y +AGA G+++K ++ A+ +G Sbjct: 65 GLASIRRIRSRDTSARILVFSIHDELIYVVRALEAGARGYITKSCAPEILVEAVARIASG 124 Query: 120 YCYFPFSLNRFVG----SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 + + + + L++LS +E V + G ++AE++ + KTV Sbjct: 125 ESFLEPEIAQRLAMQTLGGAEATTALNTLSAREFDVFLLLAKGYTTREVAEELRLGYKTV 184 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKI 203 + Y + + KL + ++ A +N I Sbjct: 185 ANYSTLIKSKLGVNTTAEMARLAYQNGI 212 >UniRef50_A0M4P6 Two-component system response regulator n=5 Tax=Flavobacteriales RepID=A0M4P6_GRAFK Length = 205 Score = 248 bits (636), Expect = 7e-65, Method: Composition-based stats. Identities = 46/203 (22%), Positives = 97/203 (47%), Gaps = 3/203 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I +DH I I+ + DIE + G ++ KP+++I D+ +P ++ Sbjct: 2 IRLVIAEDHTALIDGIKVFFEYEEDIEFVGFANNGQELIELTRRKKPNLIITDIRMPVMD 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GIQ + + + + II S + + +AGA+G++ K + ++ AI G Sbjct: 62 GIQATKEILEEFPNIKIIAFSMFDQDKAVQQMLEAGASGYILKNSSLKELLYAIRKVHEG 121 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 Y+ ++ V + + L+ ++ +++ I G+ N +IA+++FI TV T++ Sbjct: 122 EHYYDPNIT--VKQKSVSPKSKAVLTGRQREILKLIGQGRTNQEIADQLFIGKTTVETHR 179 Query: 180 SRLMEKLECKSLMDLYTFAQRNK 202 ++ KL + +L +A K Sbjct: 180 KNMIRKLGLQGAGELLRYALEKK 202 >UniRef50_D2PZN7 Two component transcriptional regulator, LuxR family n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PZN7_9ACTO Length = 242 Score = 248 bits (636), Expect = 7e-65, Method: Composition-based stats. Identities = 52/217 (23%), Positives = 97/217 (44%), Gaps = 14/217 (6%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DD L A R LL +DI ++ E +G AV PD+V++D+ +PG++ Sbjct: 16 LRVVLADDQALLRGAFRTLLDSTDDIAVVGEAGDGEEAVALTRRTHPDVVVMDIQMPGMD 75 Query: 60 GIQVLETLRKRQYSGI---IIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAA 116 G+ + ++I++ Y AGA+GF+ K + +I A+ Sbjct: 76 GLTATAQICA-DPDLRASRVLILTTYETDEYVAQALRAGASGFIGKGIDADGLIDAVRTI 134 Query: 117 KNGYCYFPFSLNRFVGSL---------TSDQQKLDSLSKQEISVMRYILDGKDNNDIAEK 167 +G + R + + D ++L +L+ +E ++ + G N +IA++ Sbjct: 135 ADGDALLSPAATRSLVARFLATPVDTAPRDVERLVALTPREREMVALVATGLSNLEIADR 194 Query: 168 MFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKIG 204 M++S TV + R M KLE + L A R + Sbjct: 195 MYVSPFTVRAHVQRAMTKLEARDRAQLVAIAYRTGLA 231 >UniRef50_Q3JFS6 DNA-binding response regulator, LuxR family n=92 Tax=Burkholderiales RepID=Q3JFS6_BURP1 Length = 282 Score = 248 bits (636), Expect = 7e-65, Method: Composition-based stats. Identities = 49/207 (23%), Positives = 109/207 (52%), Gaps = 4/207 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I DDH L +R++L + E+ E + + + V + ++++D+ +PG N Sbjct: 69 IKVLIADDHALVRDGLRHILQNASGYEVAGEAFDSATTIALVRSTPAQVLVLDLSMPGRN 128 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+++++ +++ + + I++++ + Y AGA+G+++K+ + ++ A+ +G Sbjct: 129 GVELIKQIKEEKPALRILVLTMHAEQQYAVRAFRAGASGYLTKESASSELVGAVTKVASG 188 Query: 120 YCYFPFSLNRFVGSLTSDQQ---KLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 Y ++ ++ LS +E V R I G+ IA+++ +S KTVS Sbjct: 189 GVYVSLAMAERFAQSLNEPAETLPHHRLSDREFDVFRRIASGQTLTQIADELCVSAKTVS 248 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKI 203 TYK+R++EK++ L +A R+K+ Sbjct: 249 TYKTRILEKMQMPHEAALVRYALRHKL 275 >UniRef50_C6WIC9 Two component transcriptional regulator, LuxR family n=31 Tax=Actinobacteria (class) RepID=C6WIC9_ACTMD Length = 302 Score = 248 bits (636), Expect = 7e-65, Method: Composition-based stats. Identities = 51/210 (24%), Positives = 97/210 (46%), Gaps = 7/210 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I DD L + L+ D+ +L +G AV ++PD+V++DV +P V+ Sbjct: 71 IGVVIADDQALLRGSFEVLVGSAPDLRVLGTAEDGERAVAVAARVRPDVVLMDVRMPNVD 130 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ + Q ++I++ + Y AGA+GF+ K +++AAI +G Sbjct: 131 GIEATARICAAQAGVRVLILTTFDLDEYVYAALRAGASGFLLKDTPPADLLAAIRVVASG 190 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSL------SKQEISVMRYILDGKDNNDIAEKMFISNK 173 S+ R + + + + L + +E V+R + +G N +I E + +S Sbjct: 191 EALLSPSVTRRLITEFAARPAARPLPALDAVTAREREVLRLVAEGLSNTEITEALHVSRG 250 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 T+ T+ RL+ KL + L A + + Sbjct: 251 TLKTHVGRLLHKLGARDRAQLVIAAYESGL 280 >UniRef50_Q98DH9 Two-component system response regulator n=1 Tax=Mesorhizobium loti RepID=Q98DH9_RHILO Length = 215 Score = 248 bits (635), Expect = 8e-65, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 107/207 (51%), Gaps = 4/207 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I DDHP+ + IR +L + + + E G +AV+ IVI+D +P +N Sbjct: 6 IKIVIADDHPIVRSGIRAVLEQRAEWWVCGEADNGETAVRLAREHAAKIVILDYSLPVLN 65 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ +R+ ++I + D + AGA G++ K E + ++AA+ A G Sbjct: 66 GLEATRIIRRTMPETEVLIYTMHEDESLIRETLRAGARGYLLKIEDDSELVAAVAALIRG 125 Query: 120 YCYFPFSLNRFVGSLTSDQQK---LDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 YF ++ V D Q +L+ +E V+R++ +G+ N IA ++ +S KTV Sbjct: 126 QTYFSPRVSECVLQDFLDGQSDVTSRNLTNREREVVRFVSEGESNKRIAARLGVSVKTVD 185 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKI 203 ++++ M KL ++ +DL +A RNK+ Sbjct: 186 SHRTTAMRKLGLRNAVDLVRYAIRNKL 212 >UniRef50_B3DW63 DNA-binding response regulator, NarL family (REC-HTH domains) n=7 Tax=Bacteria RepID=B3DW63_METI4 Length = 243 Score = 248 bits (635), Expect = 8e-65, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 96/205 (46%), Gaps = 7/205 (3%) Query: 2 NAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 +I+DDH + + L+ + + + +E PD+V++D+ +PG +G Sbjct: 20 KVLIVDDHAILREGLIQLINSTPGLSVCGAAKNAHEGFELIEKTMPDVVLVDISLPGKSG 79 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 +++++ + ++++S + Y + AGA G++ K EG +IAAI+ G Sbjct: 80 LELIKDIHAAYPDIALLVLSMHEESLYAERVLRAGARGYLMKNEGGQKLIAAIQKVLAGG 139 Query: 121 CYFPFSLNRFVGSLTSDQ------QKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 + + S + +++LS +E V + I G + IAE++ +S KT Sbjct: 140 ISVSERVANRILQGVSGKRKALSISPIEALSDREFEVFQLIGKGYGSRQIAEQLSLSVKT 199 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQ 199 V Y++ + +KL KS L +A Sbjct: 200 VEAYRASIKQKLYLKSGPQLVHYAI 224 >UniRef50_B9XAQ5 Two component transcriptional regulator, LuxR family n=1 Tax=bacterium Ellin514 RepID=B9XAQ5_9BACT Length = 229 Score = 248 bits (635), Expect = 8e-65, Method: Composition-based stats. Identities = 51/206 (24%), Positives = 103/206 (50%), Gaps = 7/206 (3%) Query: 2 NAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 +++DDHP+ +R ++ D+ + E A++ V++ KPD+V+ D+ +P NG Sbjct: 14 KILLVDDHPMMREGLRQIIGNEIDLAVCGEAENAFQALELVKSEKPDLVLADITLPDKNG 73 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 +++L+ L+ + ++++S ++ Y + AG G++ K EG I+ AI +G Sbjct: 74 LELLKDLQAQHPKLPVLVISMHDEALYAERVLRAGGRGYIMKHEGGKKIMQAIRHVLSGQ 133 Query: 121 CYFPFSLNRFVGSLTS------DQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 + ++ + L S +++L+ +E V R I +G +IA M +S KT Sbjct: 134 IFVSEKMSARILELFSGHGTQAASSPIENLTDREFEVFRLIGEGLSTKEIAANMHVSAKT 193 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQR 200 V ++ + KL K+ +L + R Sbjct: 194 VEVHRMNIKTKLGLKTAAELIRYTVR 219 >UniRef50_Q0B0G6 Response regulator receiver protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0B0G6_SYNWW Length = 213 Score = 248 bits (635), Expect = 1e-64, Method: Composition-based stats. Identities = 54/206 (26%), Positives = 96/206 (46%), Gaps = 5/206 (2%) Query: 2 NAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 +I DDH L +R LL ++I+++ E+ +G A+ KPDI+I+DV++PG +G Sbjct: 5 RVVIADDHVLVREGLRKLLELDSNIKVIDEVGDGQGAINIARKEKPDIIIMDVNMPGTDG 64 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 I +++ S II ++ AGA+ ++ K + ++ I NG Sbjct: 65 IVATRVIKRELPSVRIIALTVYEGEE-VVDMVKAGASAYILKDVAGSELVDTIHRVMNGE 123 Query: 121 CYFPFSLNRFVGSLTSDQQKLD---SLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 + + + L+K+E V+ ++ G N ++AE MFIS KTV Sbjct: 124 VVIYPRVANRLVRELRQSENRKSEIRLTKREKDVLTLLVKGNTNKEMAEVMFISEKTVKN 183 Query: 178 YKSRLMEKLECKSLMDLYTFAQRNKI 203 + + + KL K +A +N+I Sbjct: 184 HLTSIFRKLGVKDRTHAAIYALKNRI 209 >UniRef50_Q1LE49 Two component transcriptional regulator, LuxR family n=5 Tax=Burkholderiaceae RepID=Q1LE49_RALME Length = 264 Score = 248 bits (634), Expect = 1e-64, Method: Composition-based stats. Identities = 52/210 (24%), Positives = 104/210 (49%), Gaps = 8/210 (3%) Query: 2 NAIIIDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 + +I++DH L A +R++L + E +G A Q +L PD++++D+ +PG+NG Sbjct: 6 SVLIVEDHNLLRAGLRSMLSAQMGYHVAGEARDGREACQLAISLCPDLILMDLSLPGMNG 65 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 I + +++R II +S + Y + AG +G+V K ++++ A+ G Sbjct: 66 IDAIAAIKRRSPGIRIIALSVHQNDEYVREALRAGVDGYVLKDTSFDDLVTAMRVVLLGK 125 Query: 121 CYFPFSLNRFVG-------SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 + L + +++ + D L+ +E SV++ + +G+ N + M +S K Sbjct: 126 KHLSPELYGNLVESYVSGHEMSTAKTGWDLLTARERSVLKLVAEGRSNRQVGIYMNLSPK 185 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 T+ Y++ LM KL +L +L A + Sbjct: 186 TIEKYRASLMRKLGITNLTELVLIAISMGL 215 >UniRef50_A0NNP3 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NNP3_9RHOB Length = 205 Score = 248 bits (634), Expect = 1e-64, Method: Composition-based stats. Identities = 58/203 (28%), Positives = 105/203 (51%), Gaps = 3/203 (1%) Query: 4 IIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 ++ DDH L IR L K D+E++ E T G A+ L+PD++++DV +P +NG++ Sbjct: 1 MLADDHELVRDGIRARLQKVADLEVVGEATNGREALTLAHDLRPDVLLMDVSMPVMNGLE 60 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 +RK ++I+S ++ Y + AGA G++ K +I AI + +G Y Sbjct: 61 AATQMRKLLPEIAVLILSVYDNPEYVRGVVQAGARGYILKDISAAEMITAITSVASGGYY 120 Query: 123 FPFSLNRFVGSLTSDQQKLDS--LSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKS 180 F ++ + + D L+ +E V+ I G+ N ++A+++ IS +TV +++ Sbjct: 121 FSSAVGPTLVGAGTSAPVEDPYGLTDRERQVLTAIARGQPNKEVAKELGISVRTVESHRL 180 Query: 181 RLMEKLECKSLMDLYTFAQRNKI 203 L EK+ K+ LY AQ + Sbjct: 181 NLREKVGNKNAAQLYKVAQDLGL 203 >UniRef50_C6WV69 Two component transcriptional regulator, LuxR family n=2 Tax=Betaproteobacteria RepID=C6WV69_METML Length = 216 Score = 248 bits (634), Expect = 1e-64, Method: Composition-based stats. Identities = 48/207 (23%), Positives = 103/207 (49%), Gaps = 4/207 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + II DDH + A ++ +L + DI ++AE A++ + D++++D+ +P + Sbjct: 8 IKVIIADDHAILRAGLKQILSETEDILVIAEAQNANEAIKLGSQPEADVLLLDISLPDRS 67 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ L+ +++ ++++S + Y +GA G++ K+ + ++ AI+ G Sbjct: 68 GMEALKYIKRENSHIAVLMLSMHREDEYAIRALKSGAAGYLCKQSASSELVNAIQTVARG 127 Query: 120 YCYFPFSLNRFVGSLTSDQQ---KLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 Y + + + + LS +E I G D+A K+ +S KTVS Sbjct: 128 KKYITPEVAEILANQIGRDDQKAPHELLSDREYQTFIMIASGLSVTDVANKLSLSVKTVS 187 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKI 203 Y++RL+EK++ K +L +A ++ + Sbjct: 188 MYRARLLEKMQLKHNAELTHYAFKHNL 214 >UniRef50_B0C7V6 Two-component response regulator n=1 Tax=Acaryochloris marina MBIC11017 RepID=B0C7V6_ACAM1 Length = 222 Score = 248 bits (634), Expect = 1e-64, Method: Composition-based stats. Identities = 44/216 (20%), Positives = 96/216 (44%), Gaps = 13/216 (6%) Query: 1 MNAIIIDDHPLAIAAIR-NLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 ++ ++++DH L ++ +++D E++ E G A+ L+P+IV++D+++P ++ Sbjct: 6 IHLLLVEDHALMRMGLKGQFSLESDFEVIGEAENGQQAIDLAAQLQPNIVLMDIELPILD 65 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI + ++ ++ +SA AGA+G+ K ++A I + G Sbjct: 66 GISATQKIKATCPDIRVLALSAFGKDNQVVGMLAAGADGYCLKSIDWQQLLAVIRLIQGG 125 Query: 120 YCYFPFSLNRFVGSLTSDQQ------------KLDSLSKQEISVMRYILDGKDNNDIAEK 167 Y + + S+ LS +E V++ I +G N +IA + Sbjct: 126 GTYLDPQIAHKLASMLKSANTPTTAPAHRQTAPATVLSDREREVLQLISEGCSNQEIANQ 185 Query: 168 MFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 +++S T+ +Y ++ KL + A R + Sbjct: 186 LYLSLGTIKSYVRMILNKLSVDDRVQAAAKAVREGL 221 >UniRef50_C9M8B3 DNA-binding response regulator, LuxR family n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M8B3_9BACT Length = 212 Score = 247 bits (633), Expect = 1e-64, Method: Composition-based stats. Identities = 48/204 (23%), Positives = 104/204 (50%), Gaps = 4/204 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + I+ DDHPL ++ L + ++ ++ E +G A + +E LKPD+ ++D+ +PG + Sbjct: 4 IRVILADDHPLTRQGLKAYLEREENVALVGEAADGDEAWKLIEELKPDVALLDIRMPGAD 63 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI + +++ + I++++ + Y AGA GFV K ++ AI+ G Sbjct: 64 GITLARRIKENKLPVAAIMLTSYDSQQYVLASLKAGAKGFVLKTTSAGALMKAIQTVATG 123 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 + + VG + ++ ++LS +E V+ G + ++A +++IS +TV T+ Sbjct: 124 SLFLDSEVASVVG---AQEELTEALSPREREVLLCAARGLSSKEVAAQLYISERTVQTHL 180 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 + + +KL + + A ++ + Sbjct: 181 ASVYDKLGAHNKTEAMLLALKHGL 204 >UniRef50_D2Q2Q8 Two component transcriptional regulator, LuxR family n=3 Tax=Actinomycetales RepID=D2Q2Q8_9ACTO Length = 216 Score = 247 bits (633), Expect = 1e-64, Method: Composition-based stats. Identities = 45/213 (21%), Positives = 100/213 (46%), Gaps = 10/213 (4%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DD L A +R L+ +D+ ++ E ++G A+ +PD+V++D+ +P + Sbjct: 2 IRVLVVDDQDLVRAGLRLLIDNTDDLRVVGEASDGREALALAREHQPDVVLMDLQMPVMG 61 Query: 60 GIQVLETLRKRQY--SGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAK 117 G++ +R +++++ + AGA+G++ K + + AI A Sbjct: 62 GVETTAAIRADPLLKDTPVVVLTTFDHDADVVDAVQAGASGYLLKDLAADELRGAIRTAV 121 Query: 118 NGYCYFPFSLNRFVGSLTS-------DQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFI 170 G + + + S ++ L L+ +E+ ++ ++ G N +I + +F+ Sbjct: 122 TGGAPIAPKVAKLMMHRISRMPSRKVQEETLAGLTARELDILAHVGRGLSNEEIGQALFL 181 Query: 171 SNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 S +T TY SRL+ KL + L A + + Sbjct: 182 SPETARTYVSRLLAKLGVRDRSQLVVLAHKAGL 214 >UniRef50_C4V1Z2 Transcriptional regulator n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V1Z2_9FIRM Length = 209 Score = 247 bits (633), Expect = 1e-64, Method: Composition-based stats. Identities = 55/207 (26%), Positives = 97/207 (46%), Gaps = 7/207 (3%) Query: 4 IIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 62 +I+DDH L A I+ LL + + AE G A++ + D+VI+D+ +PG+ G+ Sbjct: 1 MIVDDHLLIRAGIKLLLKNTSAYTVTAEAESGEEALRLLAQQPIDLVIMDISMPGMGGLA 60 Query: 63 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 + +R + I+++S D Y GA G++ K N + A++ G Y Sbjct: 61 CIREIRAHYPAVKILVLSMHEDEEYIYKAMQYGAMGYLPKTSADNELFDALQVLSQGRRY 120 Query: 123 FPFSLNRFVGSLT------SDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 + + + + + L+ +E V ++ G +IAE++ +S KTV Sbjct: 121 LSPNAQQSLMDIMFRPAEEAADDPRSVLTAREREVFDELIHGYTITEIAEQLHLSVKTVD 180 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKI 203 T+K + EKL C +L T A RN + Sbjct: 181 THKKHIYEKLHCSRRSELVTLALRNGL 207 >UniRef50_C1A730 NarL family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A730_GEMAT Length = 209 Score = 247 bits (633), Expect = 1e-64, Method: Composition-based stats. Identities = 41/204 (20%), Positives = 96/204 (47%), Gaps = 5/204 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH + + LL + ++++ + +G +A+ L PD+VI D+ + ++ Sbjct: 6 IRILLVDDHAILREGLAALLNGVDGMQVIGQAGDGATAIDLYRNLLPDVVICDLRMVPMD 65 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G +V T+R + +I+++ + AGA+ ++ K +I + A G Sbjct: 66 GTEVTSTIRAEFPAARVILLTTYDTDEEVFRGLRAGASSYLLKDVEPAQLIDTVHAVYAG 125 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 S+ + + D+L+ +++ V+R + +G+ N +IA ++IS TV + Sbjct: 126 RKAIDPSIAAKLAEHVAS----DALTARQLEVLRSLAEGRSNIEIANTLYISEGTVKAHI 181 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 +++KL + T + + Sbjct: 182 KAILQKLGARDRTQAVTIGIKRGL 205 >UniRef50_C0Z4M7 Two-component response regulator n=7 Tax=Bacillales RepID=C0Z4M7_BREBN Length = 235 Score = 247 bits (633), Expect = 1e-64, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 103/224 (45%), Gaps = 21/224 (9%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DD + + ++ ++ D+E+ E + G AV+ V + PD+V++DV +P ++ Sbjct: 10 IRVVLVDDQTMIRQGLGYVIKMQKDMEVSGEASNGEEAVKIVGEIIPDVVLMDVQMPNMS 69 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI + + S ++I++ + + Y AGA G++ K +++ I A G Sbjct: 70 GIDATREITRLHPSVKVLILTTFDTYDYIVDGIRAGAVGYMLKDSDSQDMLDLIRRAHQG 129 Query: 120 YCYF-PFSLNRFVGSLTSDQQK-------------------LDSLSKQEISVMRYILDGK 159 F + + + + QQK D L+ +E V+ + GK Sbjct: 130 EALFYTATAAKALAEVLQFQQKNYEPDSDADCDSTLPPLVMFDQLTDRERDVLEQLSYGK 189 Query: 160 DNNDIAEKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 N+ IA+ + IS TV T+ R+++K+ + A R KI Sbjct: 190 RNDQIAQHLLISGGTVKTHIHRILQKMGVEDRTQAVAKAIRYKI 233 >UniRef50_C9QDP7 DNA-binding response regulator LuxR family n=2 Tax=Vibrio RepID=C9QDP7_VIBOR Length = 209 Score = 247 bits (633), Expect = 2e-64, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 111/206 (53%), Gaps = 3/206 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + I+ DDH L +++ L + D ++I+A + G A++ LKPD++++D+++P +N Sbjct: 2 IRLILADDHRLMQDGLKSRLEREDNLDIIACVGTGTEALEATLELKPDVLLLDINMPNLN 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+VLE L K + +I++S + Y AGA G+V K G ++ AI G Sbjct: 62 GIEVLEQLAKTSSATSVIMLSMHDSRDYVVRSVKAGAKGYVLKDVGSEELVMAINQVAQG 121 Query: 120 YCYFPFSLNRFVGSL--TSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 Y + + + ++K D+LSK+E V++ I +G N +IA+ + IS +TV T Sbjct: 122 RSYLCPQASDRLLEQINEAPEEKDDTLSKRESDVLKAIANGAGNKEIADSLHISVRTVET 181 Query: 178 YKSRLMEKLECKSLMDLYTFAQRNKI 203 ++ R+ +KL S L A + + Sbjct: 182 HRLRIKKKLGATSTAALVKLALQKGL 207 >UniRef50_B1ZU87 Two component transcriptional regulator, LuxR family n=4 Tax=Verrucomicrobia RepID=B1ZU87_OPITP Length = 212 Score = 247 bits (632), Expect = 2e-64, Method: Composition-based stats. Identities = 44/204 (21%), Positives = 94/204 (46%), Gaps = 6/204 (2%) Query: 1 MNAIIIDDHPLAIAAIR-NLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH + + + D+E++A++ G A++ +PD+V++D+ + G++ Sbjct: 10 IRILLVDDHMVMRMGLVTATSDEPDMEVVADVENGAEAIEAYRAHRPDVVVLDLRMHGMS 69 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ + LR + +++ S AGA+GFV K+ + ++ AI G Sbjct: 70 GVDAIRALRSEFGNVRVLVYSNYAAGEEVYQALKAGASGFVVKEMALERLLEAIRKVHAG 129 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYK 179 Y P + +G + LS +E+ V++ + G+ N +IA ++ + T + Sbjct: 130 EQYVPPEIAMRMGERL-----MAQLSPRELDVLKLVAKGRSNKEIAAELHVVEGTAKIHV 184 Query: 180 SRLMEKLECKSLMDLYTFAQRNKI 203 + ++ KL A R I Sbjct: 185 ANILTKLGVSDRTQAIVVAVRRGI 208 >UniRef50_C0Q9H4 Two component transcriptional regulator (LuxR family protein) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0Q9H4_DESAH Length = 217 Score = 247 bits (632), Expect = 2e-64, Method: Composition-based stats. Identities = 50/208 (24%), Positives = 105/208 (50%), Gaps = 7/208 (3%) Query: 2 NAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 +I DDH + I ++ + + ++ E+ +G + + T D+VI+D+ +P ++G Sbjct: 5 RVVIADDHAMLRRGICQVIETQEGVSVVGEVGDGIELLNLLSTQPADLVILDISMPKMSG 64 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 I+ + +R I+ +S + Y H AGANG++ K++ I+ A++ G Sbjct: 65 IEAAKKIRATYPGIKILFLSMHKRNEYLYHAFSAGANGYLLKEDTDTEILTAMDTILEGK 124 Query: 121 CYFPFSLNRFVGSLTSD------QQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 + + + + +D +LS +E V+ + +GK N IA+ + IS +T Sbjct: 125 AFLSSIFTKDMPDILTDMVKNGSSFPGGTLSPREEEVLTLLAEGKSNKKIADILCISTRT 184 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQRNK 202 V +++ +M++L+ ++L DL +A R+ Sbjct: 185 VEHHRASIMKRLDLRTLADLIKYAIRHG 212 >UniRef50_Q11YW8 Two component transcriptional regulator, LuxR family n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11YW8_CYTH3 Length = 215 Score = 247 bits (632), Expect = 2e-64, Method: Composition-based stats. Identities = 59/210 (28%), Positives = 114/210 (54%), Gaps = 7/210 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 ++ II DDH L I++LL ++ E++ E T+G +Q ++TL P+IV++D+ +P + Sbjct: 5 ISIIIADDHTLIRDGIKSLLQSVDEFEVVGEATDGDELIQFIDTLDPEIVVLDITMPKKS 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+V+ ++K I++S ++ Y +GA ++ K II A++A G Sbjct: 65 GIEVITEVKKYNNRVKFIVLSMHDNPEYVLKSVQSGALSYLLKNTDHEEIIKAVKAVSAG 124 Query: 120 YCYFPFSLNRFVGSLTSDQQKL------DSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 YF + + + ++ + + ++L+K+E+ V++ + G IA+K+FIS + Sbjct: 125 QKYFSPDIYSIILNGLANPELVKASQIAETLTKRELEVLKEVSMGLSTKLIADKLFISVR 184 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TV T++ LM+KL+ + +L A I Sbjct: 185 TVETHRINLMKKLDVHNSAELIKKAMDLNI 214 >UniRef50_UPI00016C48EF two-component response regulator n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C48EF Length = 220 Score = 247 bits (632), Expect = 2e-64, Method: Composition-based stats. Identities = 50/203 (24%), Positives = 98/203 (48%), Gaps = 2/203 (0%) Query: 2 NAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 ++ DDH + +R L+ + D+E++ E G V V +P ++ +D+ +PG Sbjct: 5 RIVLADDHVILREGLRALISAQPDLEVVGEAASGTETVDCVRATEPRVLCLDLSMPGWGS 64 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 + + + +++++ ND Y + AGA G+ K +++AAI A G Sbjct: 65 ATTITRVTQLAPRTRVLVLTMHNDPAYVRSALAAGAAGYFLKTTPSPDLLAAIRAVATGA 124 Query: 121 CYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKS 180 +L +G ++ LS++E V+ ++ G + +IA+++F+S KTV TY++ Sbjct: 125 RVIDPALGDVLGGPPPPAER-SQLSRRETEVLELLVKGLTHQEIADQLFLSVKTVETYRA 183 Query: 181 RLMEKLECKSLMDLYTFAQRNKI 203 RL EK K+ D + + Sbjct: 184 RLREKTGLKTRADYVRYGLEAGL 206 >UniRef50_C1TL94 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TL94_9BACT Length = 215 Score = 247 bits (632), Expect = 2e-64, Method: Composition-based stats. Identities = 57/210 (27%), Positives = 102/210 (48%), Gaps = 7/210 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + II DDH L + +R++L ++D+++LA G A++ PD+V++DV +P +N Sbjct: 2 IPLIIADDHELFLEGVRDILSREDDLDVLALARTGQEALELTLQHHPDVVVMDVTMPKMN 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI+ ++ I+ +S D AGA+G+ K+ +I AI +G Sbjct: 62 GIEASRRIKSSLGDVKILALSMHADKRLIAEILKAGASGYALKEGSSEELIRAIHIVSSG 121 Query: 120 YCYFPFSLNRFVGS------LTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNK 173 Y + + T+ + LS +E V+ + G ++A + IS Sbjct: 122 ETYLSPKIASILIKDYLKLLDTAVPSRASLLSDREREVLALLAKGSSTKEVASSLHISKN 181 Query: 174 TVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TV T++ R+MEKL+C ++ +L FA R + Sbjct: 182 TVDTHRRRIMEKLDCGNIAELIRFAIREGL 211 >UniRef50_D1BXU0 Two component transcriptional regulator, LuxR family n=3 Tax=Actinomycetales RepID=D1BXU0_XYLCX Length = 223 Score = 247 bits (632), Expect = 2e-64, Method: Composition-based stats. Identities = 50/214 (23%), Positives = 101/214 (47%), Gaps = 12/214 (5%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I DD PL A + L+ + D+E++ E +G +A+ + L+PDI +D+ +PG++ Sbjct: 2 IRVLIADDQPLVRAGLTALVNLEPDLEVVGEAGDGVTALAMAQDLRPDIACLDIRMPGLD 61 Query: 60 GIQVLETLR--KRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAK 117 GI V L + +++++ + Y +AG +GF+ K I AI Sbjct: 62 GIAVARRLCGPDVEAPIPVLVLTTFDLDDYVFGALEAGVSGFLLKDAEPETITTAIRQVA 121 Query: 118 NGYCYFPFSLNRFVGSLTSDQQKLDS---------LSKQEISVMRYILDGKDNNDIAEKM 168 G +L R + ++ L L+ +E ++ + G N++IA + Sbjct: 122 AGNGTIDQTLTRRILREFVQRRSLQPVSTSRGNGVLTSREQEILLLLAQGMSNDEIARTL 181 Query: 169 FISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNK 202 + TV ++ +R++ KL +S + +A +N+ Sbjct: 182 VVELSTVKSHLARMLPKLGVRSRLQAVVWAYQNR 215 >UniRef50_B2JSN3 Two component transcriptional regulator, LuxR family n=28 Tax=Proteobacteria RepID=B2JSN3_BURP8 Length = 210 Score = 247 bits (632), Expect = 2e-64, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 110/206 (53%), Gaps = 3/206 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I DDH + ++ ++ NDI + AE +G V ++ T D++++D+ +PG++ Sbjct: 2 IRILIADDHAIVRGGLKQIIATTNDIVVAAEAAQGSEVVDKLRTCAVDLLLLDMTMPGIS 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G+ ++ +R Q + ++++S ++ AGA G+++K + ++AAI +G Sbjct: 62 GVDLIRRVRAEQPALPVLVLSIHDEAQVASRALRAGATGYLTKDSDPDVLLAAIRKLADG 121 Query: 120 YCYFPFSLNRFVG--SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 + L + + D + LS +E V++ + GK N+IA+ +S KT+ST Sbjct: 122 GRFIDPKLVDAMVFETHRGDMPPHEVLSDREFQVLQMLAAGKSINEIADICALSAKTIST 181 Query: 178 YKSRLMEKLECKSLMDLYTFAQRNKI 203 +K RLM+KL + ++ +A R+ + Sbjct: 182 HKMRLMQKLGLANNAEVIRYAIRHGL 207 >UniRef50_A6M052 Two component transcriptional regulator, LuxR family n=8 Tax=Firmicutes RepID=A6M052_CLOB8 Length = 219 Score = 246 bits (631), Expect = 3e-64, Method: Composition-based stats. Identities = 53/212 (25%), Positives = 110/212 (51%), Gaps = 15/212 (7%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 +N +++DD + I+ +L N+I IL E G ++ ++ ++PDI+++D+ +P +N Sbjct: 2 INVVLVDDQQIVREGIKIILSLDNEISILKEAENGKQLLKILQEIQPDIILMDIRMPFMN 61 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + ++++ + +II++ N+ Y GA+G++ K ++II +I+AA NG Sbjct: 62 GVEATKIVKEKYNNIKVIILTTFNEDEYVLQGIRNGADGYILKDARSHDIIKSIKAAYNG 121 Query: 120 YCYFPFSLNRFVGSLT--------------SDQQKLDSLSKQEISVMRYILDGKDNNDIA 165 ++ + ++KL+ L+++E+ V + + G N DI Sbjct: 122 DILLDPAVTTKLIRAFNSISIDKQNSRIINKQKKKLELLTQREMDVAKLVAQGNSNKDIC 181 Query: 166 EKMFISNKTVSTYKSRLMEKLECKSLMDLYTF 197 +F++ TV Y + + EKLE S +L F Sbjct: 182 HTLFLTEGTVKNYLTNIFEKLELSSRTELALF 213 >UniRef50_D2B5Y0 Response regulator receiver protein n=14 Tax=Actinobacteria (class) RepID=D2B5Y0_STRRD Length = 227 Score = 246 bits (631), Expect = 3e-64, Method: Composition-based stats. Identities = 49/212 (23%), Positives = 97/212 (45%), Gaps = 11/212 (5%) Query: 3 AIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGI 61 +I+DD PL A + +L DI ++A+ +G + V+ PD+V++D+ +P ++G+ Sbjct: 11 VLIVDDDPLVRAGLVMMLGGAPDIRVVAQAGDGTQVLPLVDRHAPDVVLMDIRMPVMDGL 70 Query: 62 QVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 121 E LR R + +I+++ + + AGA GF+ K + I+ A+ GY Sbjct: 71 AATEVLRARPGAPEVIVLTTFDADDHVLRALRAGAAGFLLKDTPPDEIVTAVRQVARGYP 130 Query: 122 YFPFSLNRFVGSLTSDQ----------QKLDSLSKQEISVMRYILDGKDNNDIAEKMFIS 171 + R + + +D +L L+ +E V + G+ N +I + +S Sbjct: 131 VLSPVVTRRLIARVADSGHDRRRTRAGDRLALLNAREREVAVALGQGRSNAEIGAVLHLS 190 Query: 172 NKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TV T+ S ++ KL + + + + Sbjct: 191 VPTVKTHVSGILTKLGLNNRVQIALLVHDAGL 222 >UniRef50_C0Z7M8 Two-component hybrid sensor and regulator n=11 Tax=Bacillales RepID=C0Z7M8_BREBN Length = 602 Score = 246 bits (630), Expect = 3e-64, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 99/219 (45%), Gaps = 16/219 (7%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I+DDH ++R++L + D+ ++ +G AV+ E L+PD+V++D+++P ++ Sbjct: 383 IRLVIVDDHSFIRESLRSILEGQRDLRVVGLAEDGAQAVELCEELEPDLVLMDLEMPNMD 442 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI + ++++ I+++S D K +GA+G++ K + I G Sbjct: 443 GITATKRIKEKWPGIRILVLSTFQDTEKAKEIMRSGADGYLLKSIESRELAETIRLVHRG 502 Query: 120 YCYFPFSLNRFVGSLTSDQQKLD---------------SLSKQEISVMRYILDGKDNNDI 164 L + + D L+K+E +++ + G I Sbjct: 503 GTMIAQDLFHKMLDGQPVNGQEDLLVAPKQSEKDENAYGLTKREQEILQMLAQGMRYKTI 562 Query: 165 AEKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 A K+++S+ TV Y S L +KL ++ D + + Sbjct: 563 ASKLYLSDGTVRNYASALYDKLGVRNRDDAVQKGKMEGL 601 >UniRef50_C0INV4 Two component transcriptional regulator n=1 Tax=uncultured bacterium BLR5 RepID=C0INV4_9BACT Length = 215 Score = 246 bits (630), Expect = 3e-64, Method: Composition-based stats. Identities = 44/205 (21%), Positives = 90/205 (43%), Gaps = 6/205 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + + +DDHPL I L+ + D+ I+ +++ G A+ PDI ++D+ +P N Sbjct: 11 IRIMCVDDHPLMHKGISALIQSQPDMTIVGAVSKAGDALATFREKVPDITLMDLRLPDGN 70 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI + ++ K III++ + +GA G++ K +++ I +G Sbjct: 71 GIDTMISILKEHPKARIIILTMFEGDVEIQRALKSGACGYILKNMPPEDLLQVIRKVHSG 130 Query: 120 Y-CYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTY 178 + + ++ L+ +E V++ I +G N ++ ++ IS +TV + Sbjct: 131 EKKRLHPVIAATLADHFGEEN----LTSRETEVLQLISEGNSNKEVGNRLSISEETVKGH 186 Query: 179 KSRLMEKLECKSLMDLYTFAQRNKI 203 ++ KL + A R I Sbjct: 187 VKNILGKLGANDRTQAVSIAVRRGI 211 >UniRef50_Q2BNZ3 Transcriptional regulator, LuxR family protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BNZ3_9GAMM Length = 223 Score = 246 bits (630), Expect = 3e-64, Method: Composition-based stats. Identities = 55/216 (25%), Positives = 112/216 (51%), Gaps = 13/216 (6%) Query: 1 MNAIIIDDHPLAIAAI-RNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIP--- 56 + +++DDHPL A R L+ IEI+ E G SA + + PD+VI+D+++P Sbjct: 5 IKILLVDDHPLVRAGFQRLLISDESIEIVGEADNGQSACEMYASHMPDVVIMDLNMPSDA 64 Query: 57 ---GVN-----GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNN 108 ++ G++ + + +++++A + H +AGA GF++K+ + Sbjct: 65 NTEEMSNNLNGGLEAIRRIISHDPKAKVLVLTAMEIDPFPAHVVNAGAKGFLTKRCAPDE 124 Query: 109 IIAAIEAAKNGYCYFPFSLNRFVGSL-TSDQQKLDSLSKQEISVMRYILDGKDNNDIAEK 167 ++ A++A G Y + + ++D L SL+K+E+ + + +G+ + +AE+ Sbjct: 125 LLEAVKAIHAGEEYITEEIRLRITEGGSADGASLASLTKRELQIFSLLAEGRTVSIVAEE 184 Query: 168 MFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 MF+S KTV +++ + KL+ + +L A R+ I Sbjct: 185 MFLSPKTVHAHRTNIFRKLKISNNSELVHLAIRHNI 220 >UniRef50_B4SLZ0 Two component transcriptional regulator, LuxR family n=18 Tax=cellular organisms RepID=B4SLZ0_STRM5 Length = 217 Score = 246 bits (630), Expect = 3e-64, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 97/205 (47%), Gaps = 6/205 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDHPL + LL + D+ +L E +G A+ + L+PD+V++D+ +P ++ Sbjct: 8 IGVLVVDDHPLLRDGLAALLGAQPDLRLLGEAADGEEAIACYQRLQPDVVLMDLQMPRLD 67 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + +R II+++ AGA+ ++ K + ++ I G Sbjct: 68 GVEAIVRIRALDPRARIIVLTTYRGDVRAVRALQAGASAYLLKDMLRHELVDTIRMVAGG 127 Query: 120 YCY-FPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTY 178 P ++ + + + D LS +E V+R++ G N I E+M IS +TV + Sbjct: 128 RRAPIPPAVAASIAAHVVE----DRLSPRETEVLRHVAGGLSNKRIGERMQISEQTVKAH 183 Query: 179 KSRLMEKLECKSLMDLYTFAQRNKI 203 LM+KL T A R I Sbjct: 184 MKSLMDKLGVGDRTHAVTQALRRGI 208 >UniRef50_C2RNB5 Two-component protein Kinase n=1 Tax=Bacillus cereus BDRD-ST24 RepID=C2RNB5_BACCE Length = 304 Score = 246 bits (630), Expect = 3e-64, Method: Composition-based stats. Identities = 50/212 (23%), Positives = 96/212 (45%), Gaps = 9/212 (4%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + I+DDH ++ +L D++++ +G A++ LKPD+V++D+++P ++ Sbjct: 91 IRLCIVDDHSFIRESLHTILSGLEDLQVVGMAEDGEQALELCGRLKPDVVLMDLEMPNLD 150 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI + ++KR ++I+S + K GA+G+V K + +I G Sbjct: 151 GIHATKMIKKRWPEIRVLILSTFQNTERAKEIIRNGADGYVLKSIDSRELAESIRLVYRG 210 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDS--------LSKQEISVMRYILDGKDNNDIAEKMFIS 171 L + + +S LSK+E+ ++ + G IA +++S Sbjct: 211 GAMITHDLFHRMWEENKETGLFESRSDGIEYGLSKRELEILELLSQGSRYKTIASTLYLS 270 Query: 172 NKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 N TV Y S L EKL K+ + A+ + Sbjct: 271 NGTVRNYASNLYEKLGVKNREEAVQKAKDIGL 302 >UniRef50_D2PZY5 Two component transcriptional regulator, LuxR family n=2 Tax=Actinomycetales RepID=D2PZY5_9ACTO Length = 252 Score = 246 bits (630), Expect = 4e-64, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 102/230 (44%), Gaps = 27/230 (11%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DD + + +L + D+ +A+ +G A++ ++ PD+V++D+ +P ++ Sbjct: 11 IRVLVADDQGVIRTGLAMILDHEPDLTTVAQAGDGEEALRLIDRFDPDVVLMDIRMPVMD 70 Query: 60 GIQVLETLRKRQ-----YSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIE 114 G+ E + + +++++ +D Y AGA+GF+ K + ++AA+ Sbjct: 71 GLVATERITRANQEAGRSRPAVLVLTTFDDEAYVLSAVRAGASGFLLKDTDPDLLVAAVR 130 Query: 115 AAKNGYCYFPFSLNRFVGSLTSDQQK---------------------LDSLSKQEISVMR 153 A G + R + + ++ L LS++E V+ Sbjct: 131 AVHRGDSLVDPASTRVLLERCVELERQVGADPVAAAPHAADGRWTGLLAQLSERERDVLV 190 Query: 154 YILDGKDNNDIAEKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 ++ G N D+A K+F+S TV T+ S ++ KL S + A + Sbjct: 191 WMARGLSNRDLANKLFVSETTVKTHVSSVLSKLGLSSRVQAVVVAYEAGV 240 >UniRef50_UPI000050F8A6 two component transcriptional regulator, LuxR family protein n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050F8A6 Length = 222 Score = 246 bits (630), Expect = 4e-64, Method: Composition-based stats. Identities = 50/215 (23%), Positives = 96/215 (44%), Gaps = 18/215 (8%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + II DD L + +R LL +DI+I+AE G A++ L PD++++D+ +P ++ Sbjct: 3 IRVIIADDESLMRSGLRLLLGAADDIDIIAEAANGAEAIELARELSPDLILMDIRMPVMD 62 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ L + ++I++A + +GA G++ K ++I A+ AA NG Sbjct: 63 GLEATRALMAQTLHPEVLILTAFGTDEFVLQALRSGAAGYILKDTPPEDLIHAVRAAANG 122 Query: 120 YCYFPFSLNRFVGSLTS-----------------DQQKLDSLSKQEISVMRYILDGKDNN 162 S + + L+ L+ +E + + G N Sbjct: 123 TRTLSPSAVESLLGRDTTSATGVAGASNWNSVPIGPDPLEPLTTREREIAEAVAQGMTNA 182 Query: 163 DIAEKMFISNKTVSTYKSRLMEKLECKSLMDLYTF 197 +A +F+S TV T+ +R+ KL+ + + L Sbjct: 183 QVARALFVSTATVKTHLARIFYKLDVSTRVQLALL 217 >UniRef50_A9VLR5 Two component transcriptional regulator, LuxR family n=31 Tax=Bacillaceae RepID=A9VLR5_BACWK Length = 595 Score = 246 bits (630), Expect = 4e-64, Method: Composition-based stats. Identities = 40/211 (18%), Positives = 90/211 (42%), Gaps = 8/211 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +I+DD P ++R LL + D+ ++ +G A+ L+P ++++D+D+ ++ Sbjct: 383 IRLLIVDDQPFVRESLRTLLDRYEDLNVVGLAEDGNQAIDLCGRLQPHVILMDLDMQHMD 442 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ + ++++ ++I + D GA+GF+ K + I G Sbjct: 443 GVEATKKIKQQWPHIRVLIFTTFQDTEQALESLRNGADGFLLKSIETLELANTIRLIHKG 502 Query: 120 YCYFPFSLNRFV-------GSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 ++ + + L+ +EI +++ + G IA ++++SN Sbjct: 503 GTLIDQGMSHKIFEKFDEQIETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSN 562 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TV Y S KL ++ + A I Sbjct: 563 GTVRNYASTAYTKLGVRNKEEAVQKALEIGI 593 >UniRef50_A8L3K7 Two component transcriptional regulator, LuxR family n=16 Tax=Actinomycetales RepID=A8L3K7_FRASN Length = 244 Score = 246 bits (629), Expect = 4e-64, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 96/206 (46%), Gaps = 5/206 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++DDH + +R L + +DIE++ E A++R+ L P + ++D +P + Sbjct: 36 IRVFVLDDHEIVRNGLRQTLARHDDIEVVGEAGLAAEALRRIPALHPHVAVLDGRLPDGS 95 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI V +R +I+++ +D AGA G+V K+ N+++ AI +G Sbjct: 96 GIDVCREVRSALPDVACLILTSYDDDEALFSAIMAGAAGYVLKEIRGNDLVGAIRTVASG 155 Query: 120 YCYFPFSLNRFVGSLTSDQQKLDS----LSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 S+ R V D D L+++E +++ I DG N I ++ +S KTV Sbjct: 156 QSLLAPSVTRRVLERLRDGPSEDPAMATLNQREREILQLIADGLTNRQIGTRLGLSEKTV 215 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRN 201 Y S ++EKL S + + Sbjct: 216 KNYVSSILEKLGLASRTQAAVYLMKQ 241 >UniRef50_D0LE76 Response regulator receiver n=2 Tax=Actinomycetales RepID=D0LE76_GORB4 Length = 228 Score = 246 bits (629), Expect = 4e-64, Method: Composition-based stats. Identities = 44/209 (21%), Positives = 91/209 (43%), Gaps = 6/209 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DD L +R +L ++ I+ E +G V PD+V++D+ + V+ Sbjct: 14 IRVLLVDDQELIRTGLRRILRVRDGFHIVGECADGSEVPAAVAEHSPDVVVMDLRMRNVD 73 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI L +++++ +D AGA GF+ K ++I A+ A Sbjct: 74 GITATSMLAALNDPPPVLVLTTFDDDKLLSGALRAGAAGFILKDSPAESLIWAVRAVVRD 133 Query: 120 YCYFPFSLNRFVGSLTSDQ-----QKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 + ++ V + D L+++E V+R + G+ N +IA + IS T Sbjct: 134 GAFLDPAVTGRVLTGYRRSTTGDIATPDELTERETDVLRLVARGRTNAEIAAGLGISEVT 193 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 V ++ + + KL+ + +A + + Sbjct: 194 VKSHINHIFTKLDLRDRAAAIVYAFDHSL 222 >UniRef50_B2KBW2 Two component transcriptional regulator, LuxR family n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KBW2_ELUMP Length = 215 Score = 246 bits (629), Expect = 4e-64, Method: Composition-based stats. Identities = 52/212 (24%), Positives = 104/212 (49%), Gaps = 8/212 (3%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKND--IEILAELTEGGSAVQRVETLK-PDIVIIDVDIPG 57 + ++ DDH L I+++L + I ++AE+ G + K D+ ++D+ +P Sbjct: 2 IRILLADDHALVRDGIKSILERKGKNISVVAEMGNGKEMLDYAVKNKNIDVYVVDIAMPI 61 Query: 58 VNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAK 117 +NGI ++ L K +I++S +D + AGA GFV K + II AI+ Sbjct: 62 LNGIAAVQKLLKINPDAKVIVLSMYDDRASVEKAFKAGARGFVVKVSSADEIIEAIKEVS 121 Query: 118 NGYCYFPFSLNR-----FVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISN 172 G Y +++ F+G + ++ L+ +E +++ I +G + +IA++ +S Sbjct: 122 AGRFYLCSKVSKFVVQGFLGKASPSKKDPSGLTPKEKQILQLIAEGFSSKEIAKEFGLSL 181 Query: 173 KTVSTYKSRLMEKLECKSLMDLYTFAQRNKIG 204 TV +++ +M KL+ +L +A + I Sbjct: 182 NTVHVHRNNIMRKLDIHKQAELVRYAIKEGIA 213 >UniRef50_C0N7Q7 Sigma-70, region 4 family n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N7Q7_9GAMM Length = 226 Score = 246 bits (629), Expect = 4e-64, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 108/206 (52%), Gaps = 3/206 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDH + R+LL ++++E++AE +G A + + +PDIV++D+ +PG + Sbjct: 5 ITIMLVDDHAIVREGYRSLLQKQDNLEVIAEACDGTEAYSQYKKYQPDIVVMDISLPGQS 64 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ +E +R+ I++ S + + AGA G+++K ++I AI Sbjct: 65 GLKAIERIRQFDAKAKILVFSMHQNPSFALQATRAGALGYITKSSDPEDLIRAIAEVAKN 124 Query: 120 YCYFPFSLNRFVG--SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVST 177 + + + L +Q LD L+ +E ++R ++D K N DIAE + IS KTVS Sbjct: 125 KHTLSADIAQALAMEKLGQEQSALDELTVREFEILRLLVDAKSNQDIAELLNISPKTVSN 184 Query: 178 YKSRLMEKLECKSLMDLYTFAQRNKI 203 + +KL S ++L A + + Sbjct: 185 SHYIIKKKLGVSSDIELTRLAIKMNL 210 >UniRef50_Q2BNR9 DNA-binding response regulator, LuxR family protein n=2 Tax=Neptuniibacter caesariensis RepID=Q2BNR9_9GAMM Length = 214 Score = 245 bits (628), Expect = 5e-64, Method: Composition-based stats. Identities = 51/207 (24%), Positives = 96/207 (46%), Gaps = 5/207 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK--NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGV 58 M +I DDH + +LL E+L E G A ++ PD+VI+DV++ G+ Sbjct: 1 MKIVIADDHAVVRQGYASLLSAMLAPCEVL-EAGNGDQAYSLCQSDSPDVVIMDVNMQGI 59 Query: 59 NGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKN 118 +GI+ + +++ I+ S ++ +AGA G+++K +I A++ Sbjct: 60 SGIEATRRILQKKPDTRILFFSMYDEIPVVTQALEAGAKGYITKSCTPEILIEAVKKVSA 119 Query: 119 GYCYFPFSLNRFVG--SLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 G Y L + ++L ++++E + + G + +I+E++ IS+KTVS Sbjct: 120 GQLYVEHELAMRLAVSRPEQKDKRLKEMTQREFEIFVMLAQGSNVKEISEQLCISSKTVS 179 Query: 177 TYKSRLMEKLECKSLMDLYTFAQRNKI 203 Y + L KL S +L A + Sbjct: 180 NYTAILKSKLNIGSTAELVHLAIETGL 206 >UniRef50_C3AL44 Response regulator receiver n=3 Tax=Bacillus RepID=C3AL44_BACMY Length = 578 Score = 245 bits (628), Expect = 5e-64, Method: Composition-based stats. Identities = 48/203 (23%), Positives = 95/203 (46%), Gaps = 3/203 (1%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 ++ +I+DD P+ ++ LL K + + G A+++ E +P++V++D+ +P +NG Sbjct: 374 IHILIVDDQPIISDSLEFLLDKYGFRV-SVANSGAQALKQCEERQPNVVLMDIQMPKMNG 432 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 I ++ ++ R II+V+ + +AGA G+V K ++AAI G Sbjct: 433 ITTMKKIKNRWPDTKIIMVTTFEETSSVSEAIEAGAEGYVLKSVQPEELVAAIRLVHLGG 492 Query: 121 CYFPFSLNRFVGSLTS--DQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTY 178 + + S ++ L+ +E+ V+ + +G +IA K+F+S TV Y Sbjct: 493 TMLSQDVATRLFKEYSPMPKKPPYELTPREMDVLGCLKEGLRYKEIAAKLFLSEGTVRNY 552 Query: 179 KSRLMEKLECKSLMDLYTFAQRN 201 S + KL+ + A Sbjct: 553 ASSIYMKLQVSGRGEAVKKALDE 575 >UniRef50_Q7NMF3 Two-component response regulator n=1 Tax=Gloeobacter violaceus RepID=Q7NMF3_GLOVI Length = 212 Score = 245 bits (628), Expect = 5e-64, Method: Composition-based stats. Identities = 45/207 (21%), Positives = 102/207 (49%), Gaps = 6/207 (2%) Query: 2 NAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 +I++DH L +R +L + + E+ E +G A+ +L+PD+V++D+ +P ++G Sbjct: 3 RILIVEDHALMRIGLRQVLSQTPEYEVAGEAADGEQALALARSLQPDLVLMDLGLPVMSG 62 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEG--MNNIIAAIEAAKN 118 +V L++ + ++ +++ ++ AGA+G+ K + ++AA+ + ++ Sbjct: 63 TEVTRILKREYPAMRVLALTSHDEDESVFGALAAGADGYCLKATAGIASRLLAAVASVRD 122 Query: 119 GYCYFPFSLNRFVGS---LTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 G + + V + LS++E+ V++ I DG N +I +++I++ TV Sbjct: 123 GAAWLDPDIADRVLRDLGRIPQAGADNPLSEREMEVLKLIADGLTNAEIGRRLYIASGTV 182 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNK 202 + S ++ KL + A R Sbjct: 183 RVHVSNIIAKLGVNDRVQAAVRALREG 209 >UniRef50_C5B7B5 Nitrate/nitrite response regulator protein NarP n=13 Tax=Gammaproteobacteria RepID=C5B7B5_EDWI9 Length = 215 Score = 245 bits (628), Expect = 6e-64, Method: Composition-based stats. Identities = 52/202 (25%), Positives = 101/202 (50%), Gaps = 1/202 (0%) Query: 2 NAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 +I+DDHPL +R LL + ++AE + G A+ +PD++++D+++ G++G Sbjct: 12 RVMIVDDHPLMRRGVRQLLELDSVFSVVAEASNGSEAIALAGRSQPDLILLDLNMKGLSG 71 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 + L+ LR III++ + DAGA+ ++ K ++A I A G Sbjct: 72 LDTLKALRSEGIDARIIILTVSDARSDVYALVDAGADSYLLKDSEPEALLAQIRQAAEGR 131 Query: 121 CYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKS 180 F S++ ++ + + L L+++E+ V++ ++ G N IA ++ IS +TV + Sbjct: 132 SVFSESVSAYLSTRSEIADPLADLTERELDVLQEVVRGMSNKQIAAQLHISEETVKVHIR 191 Query: 181 RLMEKLECKSLMDLYTFAQRNK 202 L+ KL +S + K Sbjct: 192 NLLRKLNVRSRVAATVLYLEYK 213 >UniRef50_C0ZDE8 Two-component response regulator n=7 Tax=Bacillales RepID=C0ZDE8_BREBN Length = 214 Score = 245 bits (628), Expect = 6e-64, Method: Composition-based stats. Identities = 54/207 (26%), Positives = 110/207 (53%), Gaps = 5/207 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIP-GV 58 + +++DDH + +R LL + I+I+ E G A+ + LKPD+V++D+ +P G+ Sbjct: 2 IRVLLVDDHTMIRKGLRVLLESYSQIKIVGESHTGNDAILKANQLKPDVVLMDLSLPNGL 61 Query: 59 NGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKN 118 +G + +RK I+I++ ++ + + GA+G++ K + AI Sbjct: 62 DGFTASKEIRKSNPLVKIVILTMHDEEIFVQEAITVGAHGYILKNSHGELLFQAIVEVYR 121 Query: 119 GYCYFPFSLNRFVGS---LTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 G C++ S+++ + + + + L+ +E ++R I+ G N ++A+K+ IS KTV Sbjct: 122 GKCFYKTSVSQEIINLWLRSDAKTLPSVLTLREKELVRLIVLGYSNKEMADKLLISVKTV 181 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNK 202 +K+ +M+KL S L +A +N+ Sbjct: 182 ENHKTNIMQKLGLDSKHQLIQYAIKNR 208 >UniRef50_A9U6E4 Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U6E4_PHYPA Length = 563 Score = 245 bits (628), Expect = 6e-64, Method: Composition-based stats. Identities = 42/206 (20%), Positives = 91/206 (44%), Gaps = 12/206 (5%) Query: 1 MNAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DDHP+ ++R LL + D +++ +G A++ L+P +V++DVD+P V+ Sbjct: 358 IRLLVVDDHPVIRESLRTLLEEQQDFQVVGTAEDGEQAIELCRQLRPQLVLMDVDMPIVD 417 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI T+++ I+I++ D +G +G++ K + I G Sbjct: 418 GISASRTIKESWPHIRILILTTFEDTKQALEALRSGVDGYLLKSMQPLELAETIRTVHRG 477 Query: 120 YCYFPFSLNRFVGSLTSDQQKLD-----------SLSKQEISVMRYILDGKDNNDIAEKM 168 ++ + + D L+ +E+ +++++ G IA Sbjct: 478 GTLIEQGMSHKLFAQLEADNSGDDPSSIKASSAYDLTPRELEILQFVSKGLRYKSIASNF 537 Query: 169 FISNKTVSTYKSRLMEKLECKSLMDL 194 ++S+ TV Y S KL ++ + Sbjct: 538 YLSDGTVRNYASSAYLKLGVRNREEA 563 >UniRef50_A8ZMB6 Two-component transcriptional regulator, LuxR family n=1 Tax=Acaryochloris marina MBIC11017 RepID=A8ZMB6_ACAM1 Length = 215 Score = 245 bits (627), Expect = 6e-64, Method: Composition-based stats. Identities = 43/212 (20%), Positives = 95/212 (44%), Gaps = 9/212 (4%) Query: 1 MNAIIIDDHPLAIAAIRNLLIKNDIE-ILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + +++DD L I +LL + + G A+++ LKP+I+++D+ +P +N Sbjct: 3 IQILLVDDQYLIREGIASLLELEEDLEVAGMAANGKEAIKQAIDLKPNIILMDIRMPELN 62 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 G++ +++ II+++ +D AGA G++ K +++ AI+ A G Sbjct: 63 GVEATAKIKQSLPHCQIIMLTTFDDEELIVQSLLAGACGYLMKDIPPDDLGQAIKLADAG 122 Query: 120 YCYFPFSLNRFVGSLTSDQQKLD--------SLSKQEISVMRYILDGKDNNDIAEKMFIS 171 + + Q+ D L+ +E+ V++ + G N +IA+ +S Sbjct: 123 VFQLAPEVAGKLIGSLKTQRAGDAPKLPTDTPLTTRELEVLKLLAKGNTNKEIAKAFNLS 182 Query: 172 NKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 TV + S ++ +L + +A + + Sbjct: 183 EGTVKNHVSNILMRLGLRDRTQAAVYAVEHGL 214 >UniRef50_B9MPQ9 Two component transcriptional regulator, LuxR family n=2 Tax=Clostridia RepID=B9MPQ9_ANATD Length = 211 Score = 245 bits (627), Expect = 7e-64, Method: Composition-based stats. Identities = 43/201 (21%), Positives = 101/201 (50%), Gaps = 5/201 (2%) Query: 2 NAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGI 61 +I+DD+P + ++ +L + E+++ T A++ +E D+V++D+ +P ++GI Sbjct: 5 KVLIVDDNPAVLDGLKIILELENFEVVSLCTNAKEAIEFLEKKHADVVLMDIRMPVMDGI 64 Query: 62 QVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 121 + ++ + + +II++ + Y K GA+G++ K +I+ +I + +G Sbjct: 65 EGTFNIKTKFPNVKVIILTTFCEEDYIKKSLSFGADGYILKSSDAKHIVNSILSVLDGKV 124 Query: 122 YFPFSLNRFVGSLTSDQQKL-----DSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVS 176 + ++ + K +L+++E+ + + I G N +IA +FIS TV Sbjct: 125 VMDKEIALYISDVLKRTSKQLLEKTQNLTERELEIAKLISQGYSNKEIARMLFISEGTVR 184 Query: 177 TYKSRLMEKLECKSLMDLYTF 197 Y + +++KL K+ + + Sbjct: 185 NYITSILQKLNLKNRTQIAVY 205 >UniRef50_C0ZBD9 Two-component response regulator n=2 Tax=Paenibacillaceae RepID=C0ZBD9_BREBN Length = 215 Score = 245 bits (627), Expect = 7e-64, Method: Composition-based stats. Identities = 49/208 (23%), Positives = 98/208 (47%), Gaps = 6/208 (2%) Query: 2 NAIIIDDHPLAIAAIRNLLI-KNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 +I DDHP+A AIR+LL E++ E G A ++PD+V++D+++P +G Sbjct: 5 RVLIADDHPMARMAIRSLLDPDPSFEVIGEAQNGEEAFLLCGQIQPDLVLMDINMPKWSG 64 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 ++ ++K ++I+S +D GA G++ K ++ I + A Sbjct: 65 LEATREVKKAYPHIKVVILSVSDDVADLITAIQFGAQGYLLKNLEPDDWINYLHALLGED 124 Query: 121 CYFPFSLNRFVGSLTSDQQKLDS-----LSKQEISVMRYILDGKDNNDIAEKMFISNKTV 175 + + ++ D L+ +E ++ Y+ GK N +I+E + I+ TV Sbjct: 125 SELTREMATRLMYRFRQEEATDEMVPAVLTPREREIVMYVGAGKTNREISEALIIAENTV 184 Query: 176 STYKSRLMEKLECKSLMDLYTFAQRNKI 203 + ++EKL+ + + L +A R+ + Sbjct: 185 KNHLKNILEKLQLANRVQLAAYAVRHHL 212 >UniRef50_UPI0001746AEC response regulator with a HTH DNA-binding domain n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001746AEC Length = 222 Score = 245 bits (627), Expect = 8e-64, Method: Composition-based stats. Identities = 48/207 (23%), Positives = 94/207 (45%), Gaps = 7/207 (3%) Query: 2 NAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNG 60 +++DDH + + R +L + D+E+ A A+ +E ++PD+V+ D+ + G +G Sbjct: 11 RVLLVDDHRMVLEGYRFMLNAQPDLEVCATAVSAAEALGLLEQVRPDLVVTDLTLGGRSG 70 Query: 61 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 + +++ + I++ S ++ + AGA G+V K + A+ G Sbjct: 71 LDLIKDVMALFPETKILVCSMHDEMLWANRTLQAGARGYVMKDADGPTFLTAVRTVLAGQ 130 Query: 121 CYFPFSLNRFVGS------LTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 Y L V ++ LS +E V R +GK +IA ++ +S KT Sbjct: 131 RYMSSRLAASVLESFGQSKPRGSSSPIEKLSDREFEVFRLFGEGKTAKEIAAQLNLSPKT 190 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQRN 201 VS ++ + EKL + ++ A R+ Sbjct: 191 VSVHRDHIKEKLGFSTSAEMIRQAVRH 217 >UniRef50_B1WQK4 Two-component response regulator n=19 Tax=Cyanobacteria RepID=B1WQK4_CYAA5 Length = 247 Score = 245 bits (626), Expect = 9e-64, Method: Composition-based stats. Identities = 53/209 (25%), Positives = 111/209 (53%), Gaps = 6/209 (2%) Query: 1 MNAIIIDDHPLAIAAIRNLLIK-NDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 M +I++D PL + L + + EI+ + +G + VQ+ LKPD+V++D+ +P ++ Sbjct: 38 MRILIVEDDPLMQLGLEQALSEHPNFEIIGQAEDGYTGVQQALELKPDLVVMDIGLPRLD 97 Query: 60 GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 GI + +++++ + ++++++ +GA+ + K + ++AAIEAA++G Sbjct: 98 GIAATKQIKEQEPNIHVVMLTSHTLQTEVVAALSSGADAYCIKGASLERLLAAIEAAQDG 157 Query: 120 YCYFPFSLNRFVGSLTSDQQK-----LDSLSKQEISVMRYILDGKDNNDIAEKMFISNKT 174 Y + R V + LS++E+ V++ I++GK NN+IAE +++S T Sbjct: 158 ATYLDPQIARLVLDNLKSPNPEPNQNIALLSERELEVLKLIVEGKSNNEIAEDLYLSTNT 217 Query: 175 VSTYKSRLMEKLECKSLMDLYTFAQRNKI 203 + T+ +M KL + A R+ + Sbjct: 218 IKTHVRGIMNKLAVDDRVQAAVVALRSGL 246 >UniRef50_A8L345 Two component transcriptional regulator, LuxR family n=33 Tax=Bacteria RepID=A8L345_FRASN Length = 249 Score = 245 bits (626), Expect = 1e-63, Method: Composition-based stats. Identities = 48/214 (22%), Positives = 101/214 (47%), Gaps = 14/214 (6%) Query: 1 MNAIIIDDHPLAIAAIRNLL-IKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN 59 + ++ DD + +R +L + I ++ +G AV+ L+PD+ +ID+ +P ++ Sbjct: 23 IRVVVADDQEIVRTGLRMILDAQPGIVVVGVAVDGRRAVELARRLRPDVCLIDIRMPVMD 82 Query: 60 GIQVLETLRKRQYSGI----IIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEA 115 GIQ L +++++ + Y AGA GF+ K G + + A+ A Sbjct: 83 GIQATLAL--AGPGVADPLAVVVITTFDLDEYVYAALRAGARGFLLKDAGPDLLAQAVHA 140 Query: 116 AKNGYCYFPFSLNRFVGSLTSDQ-------QKLDSLSKQEISVMRYILDGKDNNDIAEKM 168 A G ++ + + + Q +++L+ +E V+ + G+ N++IA + Sbjct: 141 AACGDALIAPNVTARLLATFAGSGPAPVPAQPVEALTDREEQVLATVAGGRTNSEIAADL 200 Query: 169 FISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNK 202 IS TV T+ + LM KL ++ +++ +A + Sbjct: 201 HISLSTVKTHIASLMAKLGARNRVEIALWAYQTG 234 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.315 0.220 0.790 Lambda K H 0.267 0.0672 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,257,679,181 Number of Sequences: 3077464 Number of extensions: 170042190 Number of successful extensions: 521323 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 38256 Number of HSP's successfully gapped in prelim test: 10650 Number of HSP's that attempted gapping in prelim test: 420511 Number of HSP's gapped (non-prelim): 56758 length of query: 204 length of database: 1,040,396,356 effective HSP length: 123 effective length of query: 81 effective length of database: 661,868,284 effective search space: 53611331004 effective search space used: 53611331004 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.8 bits) S2: 92 (39.3 bits)