BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (387 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P24218 Prophage DLP12 integrase n=101 Tax=root RepID=IN... 790 0.0 UniRef50_Q93K89 Integrase of Shigella flexneri bacteriophage X n... 426 e-118 UniRef50_B7J7H0 Site-specific recombinase, phage integrase famil... 288 3e-76 UniRef50_C6M764 Xylulose-5-phosphate/fructose-6-phosphate phosph... 278 3e-73 UniRef50_UPI000196D4B7 site-specific recombinase, phage integras... 254 4e-66 UniRef50_A1V8M7 Site-specific recombinase, phage integrase famil... 253 7e-66 UniRef50_C6HV65 Putative phage integrase n=1 Tax=Leptospirillum ... 247 6e-64 UniRef50_C3X1W0 Phage integrase n=3 Tax=Betaproteobacteria RepID... 245 2e-63 UniRef50_C0DT82 Putative uncharacterized protein n=1 Tax=Eikenel... 241 3e-62 UniRef50_Q45YI6 Prophage integrase n=5 Tax=root RepID=Q45YI6_9CAUD 240 5e-62 UniRef50_C3X1P3 Phage integrase n=1 Tax=Oxalobacter formigenes H... 236 8e-61 UniRef50_D2TXV6 Phage integrase n=3 Tax=root RepID=D2TXV6_9ENTR 236 1e-60 UniRef50_Q5ZTV4 Prophage dlp12 integrase n=2 Tax=Legionellales R... 232 2e-59 UniRef50_Q31HE5 Tyrosine recombinase family protein n=1 Tax=Thio... 227 5e-58 UniRef50_Q47H88 Phage integrase n=1 Tax=Dechloromonas aromatica ... 225 2e-57 UniRef50_B0USU3 Phage integrase family protein n=6 Tax=Pasteurel... 218 2e-55 UniRef50_UPI0001A444C2 Tyrosine recombinase xerD n=1 Tax=Pectoba... 213 8e-54 UniRef50_A0YFT5 Phage integrase n=1 Tax=marine gamma proteobacte... 207 5e-52 UniRef50_B0U2H0 Phage integrase n=4 Tax=Xylella fastidiosa RepID... 205 2e-51 UniRef50_C5AEN7 Prophage integrase n=19 Tax=Burkholderia RepID=C... 197 7e-49 UniRef50_A6VKB4 Phage integrase family protein n=9 Tax=Pasteurel... 191 4e-47 UniRef50_C9MEM4 Prophage integrase n=1 Tax=Haemophilus influenza... 189 2e-46 UniRef50_A4NZB4 Prophage integrase n=1 Tax=Haemophilus influenza... 148 3e-34 UniRef50_A8UVD2 Phage integrase family protein n=1 Tax=Hydrogeni... 142 2e-32 UniRef50_Q2LV83 Phage integrase family protein n=1 Tax=Syntrophu... 142 3e-32 UniRef50_C6HUB8 Phage integrase family protein n=1 Tax=Leptospir... 139 2e-31 UniRef50_A1A8J6 Prophage DLP12 integrase n=5 Tax=Escherichia Rep... 139 2e-31 UniRef50_A8UUR8 Phage integrase family protein n=1 Tax=Hydrogeni... 134 4e-30 UniRef50_A1AN30 Phage integrase family protein n=1 Tax=Pelobacte... 134 4e-30 UniRef50_Q1IPY0 Phage integrase n=1 Tax=Candidatus Koribacter ve... 134 6e-30 UniRef50_B5YIK4 Site specific recombinase n=1 Tax=Thermodesulfov... 132 2e-29 UniRef50_Q9T1P3 Integrase n=4 Tax=root RepID=Q9T1P3_BPD3 129 1e-28 UniRef50_B9JRM6 Integrase protein n=1 Tax=Agrobacterium vitis S4... 129 2e-28 UniRef50_Q1Q549 Similar to site-specific tyrosine recombinase n=... 123 1e-26 UniRef50_C6MS46 Integrase family protein n=1 Tax=Geobacter sp. M... 119 2e-25 UniRef50_Q5X3B3 Putative uncharacterized protein n=2 Tax=Gammapr... 118 3e-25 UniRef50_A1K6M5 Site-specific recombinase, phage integrase famil... 118 5e-25 UniRef50_B7KWK2 Integrase family protein n=1 Tax=Methylobacteriu... 117 7e-25 UniRef50_A3P0T5 Site-specific recombinase, phage integrase famil... 115 2e-24 UniRef50_D2L4J5 Integrase family protein n=1 Tax=Desulfovibrio s... 111 4e-23 UniRef50_B6ALQ5 Integrase n=1 Tax=Leptospirillum sp. Group II '5... 108 2e-22 UniRef50_A7MJZ5 Putative uncharacterized protein n=3 Tax=Enterob... 107 9e-22 UniRef50_Q1MRZ7 Prophage DLP12 integrase (Fragment) n=1 Tax=Laws... 106 2e-21 UniRef50_C0GWH6 Integrase family protein n=3 Tax=Desulfonatronos... 105 3e-21 UniRef50_C5SDU6 Integrase family protein n=1 Tax=Allochromatium ... 104 4e-21 UniRef50_Q2STI2 Site-specific recombinase, phage integrase famil... 104 5e-21 UniRef50_B7RVJ7 Site-specific recombinase, phage integrase famil... 104 6e-21 UniRef50_Q3JF08 Phage integrase n=2 Tax=Nitrosococcus oceani Rep... 103 8e-21 UniRef50_C6MZB6 Putative integrase n=1 Tax=Legionella drancourti... 103 1e-20 UniRef50_A3T0W5 Site-specific integrase/recombinase-like n=3 Tax... 103 1e-20 UniRef50_A5EQT5 Putative prophage integrase n=1 Tax=Bradyrhizobi... 102 2e-20 UniRef50_B6ALG3 Integrase n=1 Tax=Leptospirillum sp. Group II '5... 102 3e-20 UniRef50_A2SD71 Putative uncharacterized protein n=1 Tax=Methyli... 101 4e-20 UniRef50_Q7MKK6 Integrase n=6 Tax=Proteobacteria RepID=Q7MKK6_VIBVY 100 8e-20 UniRef50_B1JZG3 Integrase family protein n=1 Tax=Burkholderia ce... 100 1e-19 UniRef50_A6VBP4 Site-specific recombinase, phage integrase famil... 99 2e-19 UniRef50_Q72A00 Site-specific recombinase, phage integrase famil... 99 2e-19 UniRef50_C4XTG1 Site-specific recombinase n=1 Tax=Desulfovibrio ... 99 2e-19 UniRef50_A6G3J3 Site-specific recombinase, phage integrase famil... 99 4e-19 UniRef50_A5IH69 Site specific recombinase n=2 Tax=Legionella pne... 97 1e-18 UniRef50_B8J3W5 Putative uncharacterized protein n=1 Tax=Desulfo... 96 2e-18 UniRef50_A1AUY6 Phage integrase family protein n=2 Tax=Desulfuro... 96 3e-18 UniRef50_B2KEQ8 Integrase family protein n=1 Tax=Elusimicrobium ... 95 5e-18 UniRef50_C6HW36 Putative phage integrase n=1 Tax=Leptospirillum ... 94 1e-17 UniRef50_A6FVR7 Phage integrase n=3 Tax=Roseobacter sp. AzwK-3b ... 94 1e-17 UniRef50_C0N6F6 Site-specific recombinase, phage integrase famil... 94 1e-17 UniRef50_A1AYV5 Phage integrase family protein n=2 Tax=Rhodobact... 92 3e-17 UniRef50_Q0VMT6 Rci protein n=22 Tax=Proteobacteria RepID=Q0VMT6... 92 3e-17 UniRef50_A6FWH8 Site-specific recombinase XerD-like protein n=1 ... 92 4e-17 UniRef50_B3E8B2 Integrase family protein n=1 Tax=Geobacter lovle... 91 7e-17 UniRef50_Q1D2W1 Site-specific recombinase, phage integrase famil... 91 8e-17 UniRef50_A8V435 Phage integrase family protein n=2 Tax=Hydrogeni... 91 8e-17 UniRef50_A0LHA2 Phage integrase family protein n=1 Tax=Syntropho... 91 9e-17 UniRef50_C6NUL0 Integrase n=1 Tax=Acidithiobacillus caldus ATCC ... 91 1e-16 UniRef50_B9BNB9 Phage integrase family protein n=2 Tax=Burkholde... 90 1e-16 UniRef50_C9M987 Xylulose-5-phosphate/fructose-6-phosphate phosph... 90 1e-16 UniRef50_B7GVF6 Tyrosine recombinase xerC n=1 Tax=Acinetobacter ... 89 2e-16 UniRef50_Q2IFG9 Phage integrase n=2 Tax=Cystobacterineae RepID=Q... 89 3e-16 UniRef50_Q1MA85 Putative shufflon-specific DNA recombinase n=3 T... 89 4e-16 UniRef50_A8ZUN3 Integrase family protein n=2 Tax=Desulfobacterac... 89 4e-16 UniRef50_C6NU13 Site-specific recombinase, phage integrase famil... 88 5e-16 UniRef50_D1RC05 Putative uncharacterized protein n=1 Tax=Parachl... 88 5e-16 UniRef50_B6AM10 Integrase n=16 Tax=Leptospirillum sp. Group II R... 87 9e-16 UniRef50_A1SRZ5 Phage integrase family protein n=1 Tax=Psychromo... 87 1e-15 UniRef50_A3V904 Phage integrase n=5 Tax=Rhodobacteraceae RepID=A... 87 1e-15 UniRef50_B6IMM4 Phage integrase n=1 Tax=Rhodospirillum centenum ... 86 2e-15 UniRef50_UPI0000E0E5BD Tyrosine recombinase xerC n=2 Tax=Proteob... 86 2e-15 UniRef50_Q1LLU5 Phage integrase n=1 Tax=Cupriavidus metalliduran... 86 3e-15 UniRef50_UPI00016AD797 phage integrase family protein n=1 Tax=Bu... 85 4e-15 UniRef50_B3CTI8 Putative integrase n=7 Tax=Orientia tsutsugamush... 84 8e-15 UniRef50_C4XNH1 Site-specific recombinase n=2 Tax=Desulfovibrio ... 84 9e-15 UniRef50_Q1NPW4 Phage integrase n=5 Tax=Deltaproteobacteria RepI... 84 1e-14 UniRef50_C8VWK7 Integrase family protein n=1 Tax=Desulfotomaculu... 84 1e-14 UniRef50_B2TH09 Integrase family protein n=4 Tax=Proteobacteria ... 83 1e-14 UniRef50_UPI00003841F3 COG0582: Integrase n=1 Tax=Magnetospirill... 83 2e-14 UniRef50_B8IQS5 Integrase family protein n=1 Tax=Methylobacteriu... 83 2e-14 UniRef50_A7FCB1 Shufflon-specific DNA recombinase n=2 Tax=Entero... 83 2e-14 UniRef50_C0GUW3 Integrase family protein n=1 Tax=Desulfonatronos... 83 2e-14 UniRef50_C8VWS4 Integrase family protein n=1 Tax=Desulfotomaculu... 83 2e-14 UniRef50_C0QB98 Putative uncharacterized protein n=1 Tax=Desulfo... 82 2e-14 UniRef50_Q1GIK7 Phage integrase n=5 Tax=Rhodobacteraceae RepID=Q... 82 3e-14 UniRef50_Q1LJF6 Phage integrase n=2 Tax=Betaproteobacteria RepID... 82 4e-14 UniRef50_Q0K8W4 Phage integrase family protein n=1 Tax=Ralstonia... 81 7e-14 UniRef50_A6QCM5 Site-specific recombinase, phage integrase famil... 80 1e-13 UniRef50_A3K1Y3 Putative uncharacterized protein n=1 Tax=Sagittu... 80 1e-13 UniRef50_A4A4J3 Integrase n=3 Tax=Gammaproteobacteria RepID=A4A4... 80 1e-13 UniRef50_C5TV13 Integrase family protein n=1 Tax=Desulfovibrio v... 80 1e-13 UniRef50_A8LM37 Integrase family protein n=3 Tax=Rhodobacterales... 80 2e-13 UniRef50_Q2W780 Integrase n=1 Tax=Magnetospirillum magneticum AM... 80 2e-13 UniRef50_D1C8V1 Integrase family protein n=1 Tax=Sphaerobacter t... 80 2e-13 UniRef50_A9AEX0 Tyrosine recombinase n=1 Tax=Burkholderia multiv... 80 2e-13 UniRef50_Q11LX6 Phage integrase n=1 Tax=Chelativorans sp. BNC1 R... 79 2e-13 UniRef50_A5CCP8 Phage-related integrase n=25 Tax=Orientia tsutsu... 79 3e-13 UniRef50_B0UQB2 Integrase family protein n=5 Tax=Rhizobiales Rep... 79 3e-13 UniRef50_Q8XZ52 Putative integrase/recombinase protein n=1 Tax=R... 79 3e-13 UniRef50_Q1K3L6 Phage integrase n=1 Tax=Desulfuromonas acetoxida... 79 3e-13 UniRef50_A1WTV4 Phage integrase family protein n=1 Tax=Halorhodo... 79 4e-13 UniRef50_B2K361 Integrase family protein n=16 Tax=Gammaproteobac... 79 4e-13 UniRef50_A1VC91 Phage integrase family protein n=1 Tax=Desulfovi... 79 4e-13 UniRef50_B0UKQ5 Integrase family protein n=2 Tax=Rhizobiales Rep... 78 4e-13 UniRef50_P10487 Shufflon-specific DNA recombinase n=21 Tax=root ... 78 5e-13 UniRef50_B9JF62 Tyrosine site-specific integrase/recombinase pro... 78 6e-13 UniRef50_B1FJ84 Integrase family protein n=1 Tax=Burkholderia am... 78 6e-13 UniRef50_A3VQY7 Phage integrase n=1 Tax=Parvularcula bermudensis... 78 6e-13 UniRef50_A7HHG2 Phage integrase family protein n=1 Tax=Anaeromyx... 78 6e-13 UniRef50_D0ZP51 Integrase n=5 Tax=Salmonella enterica subsp. ent... 78 7e-13 UniRef50_D2YQV3 Phage integrase family protein n=2 Tax=Vibrio Re... 77 7e-13 UniRef50_C1SNQ2 Site-specific recombinase XerD n=1 Tax=Denitrovi... 77 1e-12 UniRef50_Q0F389 Site-specific recombinase, phage integrase famil... 77 1e-12 UniRef50_B3T0I4 Putative Phage integrase family protein n=2 Tax=... 77 1e-12 UniRef50_Q1MNY2 Integrase n=1 Tax=Lawsonia intracellularis PHE/M... 77 1e-12 UniRef50_D2L4K8 Integrase family protein n=1 Tax=Desulfovibrio s... 77 1e-12 UniRef50_C8R239 Integrase family protein n=1 Tax=Desulfurivibrio... 76 2e-12 UniRef50_P21442 Integrase n=10 Tax=root RepID=VINT_BPHP1 76 2e-12 UniRef50_C4KAG8 Integrase family protein n=1 Tax=Thauera sp. MZ1... 76 2e-12 UniRef50_Q3SHX2 Site-specific recombinase, phage integrase famil... 75 4e-12 UniRef50_D1WVW4 Integrase family protein n=1 Tax=Streptomyces sp... 75 4e-12 UniRef50_Q2STX2 Site-specific recombinase, phage integrase famil... 75 4e-12 UniRef50_C4KVM9 Site-specific recombinase, phage integrase famil... 75 4e-12 UniRef50_C9CXZ5 Phage integrase n=1 Tax=Silicibacter sp. TrichCH... 75 4e-12 UniRef50_Q2W8W7 Integrase n=2 Tax=Magnetospirillum RepID=Q2W8W7_... 75 4e-12 UniRef50_Q3Z6H5 Site-specific recombinase, phage integrase famil... 75 5e-12 UniRef50_Q30Q21 Phage integrase n=1 Tax=Sulfurimonas denitrifica... 74 6e-12 UniRef50_Q30VV4 Site-specific recombinase, phage integrase famil... 74 7e-12 UniRef50_A3NCI9 Phage integrase n=6 Tax=Burkholderia RepID=A3NCI... 74 7e-12 UniRef50_C4XJ44 Site-specific recombinase n=1 Tax=Desulfovibrio ... 74 8e-12 UniRef50_B8IHP1 Integrase family protein n=1 Tax=Methylobacteriu... 74 8e-12 UniRef50_C7I1A8 Integrase family protein n=1 Tax=Thiomonas inter... 74 8e-12 UniRef50_P06723 Integrase n=52 Tax=root RepID=VINT_BP186 74 9e-12 UniRef50_A4ISA3 Integrase, phage-related protein n=11 Tax=root R... 74 1e-11 UniRef50_C5V2X2 Integrase family protein n=1 Tax=Gallionella fer... 74 1e-11 UniRef50_Q479U8 Phage integrase n=1 Tax=Dechloromonas aromatica ... 74 1e-11 UniRef50_A1V9J7 Phage integrase family protein n=1 Tax=Desulfovi... 74 1e-11 UniRef50_B8FGB9 Integrase family protein n=2 Tax=Desulfobacterac... 74 1e-11 UniRef50_A6GBT9 Phage integrase n=2 Tax=Plesiocystis pacifica SI... 74 1e-11 UniRef50_B8KTC0 Site-specific recombinase, phage integrase famil... 73 1e-11 UniRef50_A9D4N1 Putative uncharacterized protein n=1 Tax=Hoeflea... 73 2e-11 UniRef50_A1VU89 Phage integrase family protein n=2 Tax=Burkholde... 73 2e-11 UniRef50_A2SK62 Putative uncharacterized protein n=1 Tax=Methyli... 72 2e-11 UniRef50_Q1RJE3 Integrase n=9 Tax=Rickettsia RepID=Q1RJE3_RICBR 72 2e-11 UniRef50_B8FKX9 Integrase family protein n=2 Tax=Desulfatibacill... 72 2e-11 UniRef50_Q1QLE5 Phage integrase n=2 Tax=Nitrobacter RepID=Q1QLE5... 72 3e-11 UniRef50_Q2RHJ2 Phage integrase n=3 Tax=Firmicutes RepID=Q2RHJ2_... 72 3e-11 UniRef50_C5V1I5 Integrase family protein n=1 Tax=Gallionella fer... 72 3e-11 UniRef50_D0KZD4 Integrase family protein n=1 Tax=Halothiobacillu... 72 3e-11 UniRef50_C2NSI2 DNA integration/recombination/invertion protein ... 72 4e-11 UniRef50_A0LL76 Phage integrase family protein n=1 Tax=Syntropho... 72 4e-11 UniRef50_A9KUT0 Integrase family protein n=1 Tax=Shewanella balt... 72 5e-11 UniRef50_A6FXR9 Phage integrase n=1 Tax=Plesiocystis pacifica SI... 71 5e-11 UniRef50_Q129B4 Phage integrase n=1 Tax=Polaromonas sp. JS666 Re... 71 7e-11 UniRef50_Q1Q3R1 Putative uncharacterized protein n=1 Tax=Candida... 71 7e-11 UniRef50_A6T2V9 Integrase n=1 Tax=Janthinobacterium sp. Marseill... 71 7e-11 UniRef50_C6MQB4 Integrase family protein n=1 Tax=Geobacter sp. M... 71 7e-11 UniRef50_A6G8N0 Phage integrase n=2 Tax=Plesiocystis pacifica SI... 71 8e-11 UniRef50_A6SV87 Site-specific recombinase, phage integrase famil... 71 8e-11 UniRef50_Q3SUE5 Phage integrase n=6 Tax=Alphaproteobacteria RepI... 71 9e-11 UniRef50_Q04676 Rci protein n=10 Tax=Enterobacteriaceae RepID=Q0... 70 9e-11 UniRef50_B8FMY9 Integrase family protein n=1 Tax=Desulfatibacill... 70 9e-11 UniRef50_C8WAJ5 Integrase family protein n=2 Tax=Atopobium RepID... 70 9e-11 UniRef50_A4J1T6 Phage integrase family protein n=1 Tax=Desulfoto... 70 1e-10 UniRef50_B8D1P6 Phage integrase family protein n=1 Tax=Halotherm... 70 1e-10 UniRef50_A4U5E9 Phage-related integrase, n=1 Tax=Magnetospirillu... 70 1e-10 UniRef50_A7HRY8 Integrase family protein n=8 Tax=Alphaproteobact... 70 1e-10 UniRef50_C7LSP4 Integrase family protein n=1 Tax=Desulfomicrobiu... 70 1e-10 UniRef50_B8EKX9 Integrase family protein n=1 Tax=Methylocella si... 70 1e-10 UniRef50_C5CWK1 Integrase family protein n=3 Tax=Proteobacteria ... 70 1e-10 UniRef50_B5ZFU3 Integrase family protein n=1 Tax=Gluconacetobact... 69 2e-10 UniRef50_C6QSP6 Integrase family protein n=1 Tax=Geobacillus sp.... 69 2e-10 UniRef50_B4WEQ1 Site-specific recombinase, phage integrase famil... 69 3e-10 UniRef50_B5K270 Integrase n=1 Tax=Octadecabacter antarcticus 238... 69 4e-10 UniRef50_UPI0000383636 COG0582: Integrase n=1 Tax=Magnetospirill... 68 5e-10 UniRef50_A3D8Y1 Phage integrase family protein n=4 Tax=Shewanell... 68 5e-10 UniRef50_B1VR34 Putative integrase/recombinase n=1 Tax=Streptomy... 68 5e-10 UniRef50_B1VP49 Putative phage integrase n=1 Tax=Streptomyces gr... 68 6e-10 UniRef50_Q3R024 Phage integrase n=3 Tax=Xylella fastidiosa RepID... 68 6e-10 UniRef50_Q72FH7 Site-specific recombinase, phage integrase famil... 68 6e-10 UniRef50_Q31CF2 Putative site-specific integrase/recombinase n=1... 68 6e-10 UniRef50_Q2W123 Integrase n=1 Tax=Magnetospirillum magneticum AM... 68 6e-10 UniRef50_A5CFJ0 Phage-related integrase n=19 Tax=Orientia tsutsu... 68 6e-10 UniRef50_A7HE51 Phage integrase family protein n=3 Tax=Myxococca... 68 7e-10 UniRef50_B8J4X3 Integrase family protein n=1 Tax=Desulfovibrio d... 67 8e-10 UniRef50_A1B6Q9 Phage integrase family protein n=1 Tax=Paracoccu... 67 8e-10 UniRef50_B0PGN2 Putative uncharacterized protein n=2 Tax=Clostri... 67 8e-10 UniRef50_A8L4Q7 Integrase family protein n=9 Tax=Actinomycetales... 67 9e-10 UniRef50_Q1K2Z6 Phage integrase n=1 Tax=Desulfuromonas acetoxida... 67 9e-10 UniRef50_C9Q2Y3 Integrase n=1 Tax=Vibrio sp. RC341 RepID=C9Q2Y3_... 67 9e-10 UniRef50_B5H9T3 TraSA integrase fusion protein n=4 Tax=Streptomy... 67 9e-10 UniRef50_B8F8V6 Integrase family protein n=1 Tax=Desulfatibacill... 67 1e-09 UniRef50_B7I3I8 Integrase n=4 Tax=Acinetobacter baumannii RepID=... 67 1e-09 UniRef50_A1VPL3 Phage integrase family protein n=1 Tax=Polaromon... 67 1e-09 UniRef50_B5ZXT1 Integrase family protein n=1 Tax=Rhizobium legum... 67 1e-09 UniRef50_A0LQG0 Phage integrase family protein n=2 Tax=Deltaprot... 67 1e-09 UniRef50_D1TKI7 Integrase family protein n=1 Tax=Burkholderia sp... 67 2e-09 UniRef50_B0VN10 Putative phage integrase/recombinase n=1 Tax=Aci... 66 2e-09 UniRef50_B9KV34 Phage integrase n=4 Tax=Rhodobacter RepID=B9KV34... 66 2e-09 UniRef50_C1DF50 Phage integrase n=4 Tax=Pseudomonadaceae RepID=C... 66 2e-09 UniRef50_C6XR20 Integrase family protein n=1 Tax=Hirschia baltic... 66 2e-09 UniRef50_A6G3E1 Phage integrase n=2 Tax=Plesiocystis pacifica SI... 66 3e-09 UniRef50_A0AGT2 Complete genome n=7 Tax=Bacilli RepID=A0AGT2_LISW6 66 3e-09 UniRef50_Q88KJ3 Integrative genetic element Ppu40, integrase n=1... 65 3e-09 UniRef50_Q21U03 Phage integrase n=4 Tax=Burkholderiales RepID=Q2... 65 3e-09 UniRef50_A4XMV7 Phage integrase family protein n=2 Tax=Caldicell... 65 3e-09 UniRef50_D2LJU9 Integrase family protein n=1 Tax=Rhodomicrobium ... 65 3e-09 UniRef50_B1M1F6 Integrase family protein n=2 Tax=Methylobacteriu... 65 3e-09 UniRef50_Q2IHV3 Phage integrase n=1 Tax=Anaeromyxobacter dehalog... 65 4e-09 UniRef50_C6HVL4 Phage integrase family protein n=1 Tax=Leptospir... 65 4e-09 UniRef50_B9YYR1 Integrase family protein n=2 Tax=Proteobacteria ... 65 4e-09 UniRef50_B1JDB3 Integrase family protein n=3 Tax=root RepID=B1JD... 65 5e-09 UniRef50_Q97JV3 Integrase/recombinase (XerD/xerC family) n=1 Tax... 65 5e-09 UniRef50_A5EBE3 Putative phage related integrase n=1 Tax=Bradyrh... 65 5e-09 UniRef50_B9KXE0 Transposase n=1 Tax=Thermomicrobium roseum DSM 5... 64 7e-09 UniRef50_A9VYK3 Integrase family protein n=2 Tax=Methylobacteriu... 64 7e-09 UniRef50_A8GE25 Integrase family protein n=18 Tax=Enterobacteria... 64 7e-09 UniRef50_Q11J21 Phage integrase n=1 Tax=Chelativorans sp. BNC1 R... 64 7e-09 UniRef50_A0LKH4 Phage integrase family protein n=1 Tax=Syntropho... 64 7e-09 UniRef50_UPI0001AEC0CD phage integrase n=1 Tax=Alteromonas macle... 64 7e-09 UniRef50_A6U795 Phage integrase family protein n=39 Tax=Rhizobia... 64 8e-09 UniRef50_B5K290 Phage integrase n=2 Tax=Octadecabacter antarctic... 64 8e-09 UniRef50_C7HXJ3 Integrase family protein n=2 Tax=Thiomonas inter... 64 8e-09 UniRef50_A4SIA1 Phage integrase family protein n=2 Tax=Gammaprot... 64 8e-09 UniRef50_A5L0D6 Site-specific recombinase, phage integrase famil... 64 8e-09 UniRef50_A1VGL4 Phage integrase family protein n=1 Tax=Desulfovi... 64 8e-09 UniRef50_B6R5P1 Phage integrase n=1 Tax=Pseudovibrio sp. JE062 R... 64 9e-09 UniRef50_Q2JGT4 Phage integrase n=4 Tax=Frankia RepID=Q2JGT4_FRASC 64 9e-09 UniRef50_C3RL48 Tyrosine recombinase xerC n=4 Tax=Bacteria RepID... 64 9e-09 UniRef50_C0EDT0 Putative uncharacterized protein n=2 Tax=Clostri... 64 1e-08 UniRef50_Q72B79 Site-specific recombinase, phage integrase famil... 64 1e-08 UniRef50_Q1QMK4 Phage integrase n=2 Tax=Bradyrhizobiaceae RepID=... 64 1e-08 UniRef50_P96629 ICEBs1 integrase n=1 Tax=Bacillus subtilis RepID... 64 1e-08 UniRef50_A3NDT2 Integrase n=5 Tax=pseudomallei group RepID=A3NDT... 64 1e-08 >UniRef50_P24218 Prophage DLP12 integrase n=101 Tax=root RepID=INTD_ECOLI Length = 387 Score = 790 bits (2040), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/387 (100%), Positives = 387/387 (100%) Query: 1 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFE 60 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFE Sbjct: 1 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFE 60 Query: 61 EACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 EACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK Sbjct: 61 EACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 Query: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRN 180 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRN Sbjct: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRN 180 Query: 181 KRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEE 240 KRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEE Sbjct: 181 KRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEE 240 Query: 241 SKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWL 300 SKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWL Sbjct: 241 SKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWL 300 Query: 301 SACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEH 360 SACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEH Sbjct: 301 SACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEH 360 Query: 361 ARKIDDIFGDNVPNMSHSEIMEDIKKA 387 ARKIDDIFGDNVPNMSHSEIMEDIKKA Sbjct: 361 ARKIDDIFGDNVPNMSHSEIMEDIKKA 387 >UniRef50_Q93K89 Integrase of Shigella flexneri bacteriophage X n=8 Tax=root RepID=Q93K89_ECOLX Length = 386 Score = 426 bits (1095), Expect = e-118, Method: Compositional matrix adjust. Identities = 205/379 (54%), Positives = 265/379 (69%), Gaps = 1/379 (0%) Query: 1 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFE 60 MS+ R W+ + P G R++ SL T DKRQAQELHD+ KAE WRV+ LG+ P F+ Sbjct: 1 MSIKLRGGTWHCDFVAPDGSRVRRSLETSDKRQAQELHDRLKAEAWRVKNLGESPKKLFK 60 Query: 61 EACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 EAC+RWL EK+DKKS+D DKS I FW+ HF L DI+ KI AV M NR+ + W+ Sbjct: 61 EACIRWLREKSDKKSIDDDKSIISFWMLHFRETILSDITTEKIMEAVDGMENRRHRLNWE 120 Query: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRN 180 +R GK +P Y+PK S TK +HLA+++AIL A +W WL++ P I P V+N Sbjct: 121 MSRDRCLRLGKPVPEYKPKLASKGTKTRHLAILRAILNMAV-EWGWLDRTPKISTPRVKN 179 Query: 181 KRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEE 240 R+RWL +EE+KRL E VV FA+ TGLR+SN+ +LEW Q+D+ +++AW++P+E Sbjct: 180 GRIRWLTEEESKRLFAEIAPHFFPVVMFAITTGLRRSNVTDLEWSQVDLDKKMAWMHPDE 239 Query: 241 SKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWL 300 +K+ AIGV LN+TAC++LR Q G H +WVFVHTK A R+DGT T AVRKMR DS +W Sbjct: 240 TKAGNAIGVPLNETACQILRKQQGLHKRWVFVHTKPAYRSDGTKTAAVRKMRTDSNKAWK 299 Query: 301 SACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEH 360 A +RAGI +FRFHDLRHTWASWL+QSGV L L+EMGGWE++EMV+RYAHL+ HLTEH Sbjct: 300 GALKRAGISNFRFHDLRHTWASWLVQSGVSLLALKEMGGWETLEMVQRYAHLSAGHLTEH 359 Query: 361 ARKIDDIFGDNVPNMSHSE 379 A KID I N N + E Sbjct: 360 ASKIDAIISRNGTNTAQEE 378 >UniRef50_B7J7H0 Site-specific recombinase, phage integrase family n=5 Tax=Bacteria RepID=B7J7H0_ACIF2 Length = 349 Score = 288 bits (736), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 150/388 (38%), Positives = 235/388 (60%), Gaps = 48/388 (12%) Query: 3 LFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEA 62 L++R + W+ S++ P G+RI+ S GT +K QA+ELHD KA+ WR +LGD P T+++A Sbjct: 2 LYKRGKTWWISFTTPNGQRIRRSAGTTEKAQAEELHDSLKAQAWRQVQLGDRPAYTWDDA 61 Query: 63 CLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQK 122 +RWL+EKA K SL +D+ + + +HF G+ L+D++ +I + + Sbjct: 62 GVRWLDEKAHKASLVTDEIFLAWLQDHFRGVPLRDLNRDRIMTVLQ-------------- 107 Query: 123 VQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKR 182 I+K + S T ++A+I+++LRAA +W WL+ P+++ +R Sbjct: 108 ----IKKTQ---------TSASTANHYMALIRSMLRAAV-EWGWLDYPPLLRPYPTPTQR 153 Query: 183 VRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESK 242 VRWL E+A L++E P L+ + F+LATGLR+SN+ LEW Q+D+ R++AW++ +++K Sbjct: 154 VRWLTPEQAVLLLNELPPHLRDMAAFSLATGLRRSNVTGLEWSQLDLGRKIAWIHADQAK 213 Query: 243 SNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSA 302 + + I V L+D A +LR QIG H ++V T KR +T A W A Sbjct: 214 ARKPITVPLDDVAISILRAQIGNHP--IYVFTYCGKRVTQVNTKA-----------WKKA 260 Query: 303 CRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHA- 361 RAGIE+FR+HDLRHTWASW IQ+G PL+ LQ++GGW S EMVR+YAHL+P HL ++A Sbjct: 261 LERAGIENFRWHDLRHTWASWHIQAGTPLNTLQDLGGWHSSEMVRKYAHLSPEHLAQYAQ 320 Query: 362 ---RKIDDIFGDNVPNMSHSEIMEDIKK 386 + + +G +S ++E+ K+ Sbjct: 321 NAGQNLQPAYGT---KLSQPHLVEEAKR 345 >UniRef50_C6M764 Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase n=3 Tax=Neisseriaceae RepID=C6M764_NEISI Length = 352 Score = 278 bits (710), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 147/372 (39%), Positives = 221/372 (59%), Gaps = 45/372 (12%) Query: 1 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFE 60 M ++ RN ++Y G+RI++S+GTK+K++AQ+LHDK ELW+ E + P +E Sbjct: 1 MPIYLRNGVYYVDIRTESGRRIRQSVGTKNKKEAQKLHDKLTYELWQHEHFDEKPKRLWE 60 Query: 61 EACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 EA +RW++EK+DKKS+ D R+ L G+ L +S I V R+ Sbjct: 61 EAAVRWIKEKSDKKSIKDDICRLRM-LPKLRGVYLHHLSRDFIMDVVDRL---------- 109 Query: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRN 180 P S TK +++A+I++IL A+ +W W++K P +K+ Sbjct: 110 -------------------PCSNSTKNRYIALIRSILYKAQNEWGWIDKVPKLKLKKEAE 150 Query: 181 KRVRWLEKEEAKRLIDECPEP-LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPE 239 KR+RWL+ EEA++LI+ P+ +++ KF+ TGLR+ N+ L W+Q+D+ R+ AW+ P+ Sbjct: 151 KRIRWLKPEEAEQLINALPDDHWRAIAKFSFCTGLRQRNVFGLRWEQVDLNRKTAWIYPD 210 Query: 240 ESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSW 299 E+K+ R IGV LND A +VL +++G H +VF + R + T +M W Sbjct: 211 EAKAGRPIGVPLNDVAIRVLSERMGIHKTYVFTN-----RENKPITALSSRM-------W 258 Query: 300 LSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTE 359 RAGI +FR+HD+RHTWASWL+Q GVPL L+EMGGWE ++MV RYAHLA +HL Sbjct: 259 KRTLERAGISNFRWHDIRHTWASWLVQRGVPLVALKEMGGWERLDMVMRYAHLATDHLIA 318 Query: 360 HARKIDDI--FG 369 HA +DD+ FG Sbjct: 319 HAEVLDDLENFG 330 >UniRef50_UPI000196D4B7 site-specific recombinase, phage integrase family protein n=1 Tax=Neisseria mucosa ATCC 25996 RepID=UPI000196D4B7 Length = 289 Score = 254 bits (649), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 136/324 (41%), Positives = 194/324 (59%), Gaps = 43/324 (13%) Query: 45 LWRVEKLGDLPDVTFEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIY 104 +WR + LGD P V ++EACLRWL+EK KKSL D+++I L F G+ L +++ I Sbjct: 1 MWRQQHLGDKPKVLWDEACLRWLDEKQGKKSLVHDETKIRR-LTAFRGLYLHHMTKTVIM 59 Query: 105 SAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDW 164 + ++++ S TK ++LA ++A+L A +DW Sbjct: 60 AEIAKLEG-----------------------------SNATKNRYLAFVQALLNKAAKDW 90 Query: 165 KWLEKAPVIKIPAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEW 224 ++L+ AP + KR+RWL +EA+RLI P+ + ++V F+L TGLRKSN+ L+W Sbjct: 91 EYLDGAPKLPRYQEAKKRIRWLTPQEAERLIAALPDYIAAMVVFSLNTGLRKSNVFGLKW 150 Query: 225 QQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTS 284 QQID +R+VAW + +E+KS RA+GVALND A VL Q GKH ++VF + + Sbjct: 151 QQIDFKRKVAWFHHDETKSGRALGVALNDAAVAVLLKQRGKHPEYVFTNNRC-------- 202 Query: 285 TPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIE 344 K D K W A + AGIE+FR+HDLRHTWASWL+Q+GV L L+EMGGW + Sbjct: 203 -----KPVKDVKKPWKKALQDAGIENFRWHDLRHTWASWLVQNGVSLYALKEMGGWSDFD 257 Query: 345 MVRRYAHLAPNHLTEHARKIDDIF 368 MV+RYAHLAP HL HA ++ + Sbjct: 258 MVQRYAHLAPEHLHRHAGLLNSLL 281 >UniRef50_A1V8M7 Site-specific recombinase, phage integrase family n=22 Tax=root RepID=A1V8M7_BURMS Length = 369 Score = 253 bits (646), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 144/369 (39%), Positives = 217/369 (58%), Gaps = 41/369 (11%) Query: 1 MSLFRRNEI--WYASYSLPGGKRI-KESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDV 57 MSL++RN WY + PGG + + S GT +K AQEL+D+ K ELW KLG P Sbjct: 1 MSLYKRNNSPNWYYRLTPPGGGPVVQGSTGTSNKAHAQELYDRLKVELWNQAKLGHKPRY 60 Query: 58 TFEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKE 117 + +A +R++ ++ SL++ K+ + + H G+ L DI ++ A++ + + Sbjct: 61 LWNDAVVRYVGDREGLSSLETSKTHLRWLDPHLSGVALADIDRDRV-DAIAHAKRCEPRV 119 Query: 118 IWKQKVQAAIRKGKELPVYEPKPVSTQ----TKAKHLAMIKAILRAAERDWKWLEKAPVI 173 + R G PKP+ T + + ++ A+L AA +W+WL++APV+ Sbjct: 120 V-------RTRNG-------PKPIGGTIGEGTVRRVIGVLMAVLHAAV-EWEWLDRAPVL 164 Query: 174 KIPAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRV 233 K KRVRW+ +A+RL+ E P L + +F+L TGLR+SN+ LEW Q+D+ RRV Sbjct: 165 KRRKTTPKRVRWITPAQAERLLAELPAHLSDMARFSLETGLRRSNVTGLEWSQVDLARRV 224 Query: 234 AWVNPEESKSNRAIGVALNDTACKVLRDQIGK-----HHKWVFVHTKAAKRADGTSTPAV 288 AW++P+++K+ +AI V L+DTA VLR Q+ K H + VFV+ R P Sbjct: 225 AWIHPDQAKARKAITVPLSDTAVDVLRRQLSKRRAAEHIERVFVY-----RGSAIGQP-- 277 Query: 289 RKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRR 348 + +W A +RAGI DFR+HDLRHTWASW +Q G PL VL+E+GGWE++EMV+R Sbjct: 278 ------NTAAWRKALKRAGIRDFRWHDLRHTWASWHVQRGTPLQVLKELGGWETLEMVQR 331 Query: 349 YAHLAPNHL 357 YAHL+ +HL Sbjct: 332 YAHLSADHL 340 >UniRef50_C6HV65 Putative phage integrase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HV65_9BACT Length = 337 Score = 247 bits (630), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 142/367 (38%), Positives = 218/367 (59%), Gaps = 43/367 (11%) Query: 3 LFRRNE--IWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFE 60 LF+R + IW+ S+++ G +R + S GT DK QA ELHD+ K+E WR L + P + ++ Sbjct: 2 LFKRKDSPIWWVSFTVRG-RRTRCSAGTTDKAQALELHDRWKSEAWREISLKEKPKLGWK 60 Query: 61 EACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 EA L+WLE K+ K ++ D++ + F ++G +L +I + +I S K Sbjct: 61 EAALKWLEVKSAKATIHDDEAHLLFIQNFWKGKKLSEIGKEEIDSL-------------K 107 Query: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRN 180 K +A VS T + L++++AILR + + W+E P +++ Sbjct: 108 VKKKAT-------------GVSNATVNRMLSLVRAILRMSFKL-GWIESVPPVELMPEPK 153 Query: 181 KRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEE 240 KR+RWL KEEA +L+ PE + + +FAL TGLR+ NI+ LEW Q+D+ R+V W++ ++ Sbjct: 154 KRIRWLTKEEAAKLLSYLPEHQERIARFALLTGLRQGNILGLEWSQVDLVRKVLWIHADQ 213 Query: 241 SKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWL 300 +K +AIG+ L D A +LR+ G+H +WVF T R + +T A RK Sbjct: 214 AKGRKAIGIPLPDAAVTLLRELSGQHPQWVF--TYKGNRINQVNTLAWRK---------- 261 Query: 301 SACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEH 360 A ++AGIE+FR+HDLRH WASW IQ G PL L+E+GGWES++MV RY+H+AP HL + Sbjct: 262 -ALKKAGIENFRWHDLRHCWASWHIQDGTPLYALKELGGWESMDMVMRYSHMAPEHLAPY 320 Query: 361 ARKIDDI 367 +K D + Sbjct: 321 VQKKDIV 327 >UniRef50_C3X1W0 Phage integrase n=3 Tax=Betaproteobacteria RepID=C3X1W0_OXAFO Length = 354 Score = 245 bits (625), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 142/378 (37%), Positives = 213/378 (56%), Gaps = 43/378 (11%) Query: 1 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFE 60 M+L++R + ++ S++ P GKRI+ S GT ++++AQ+L DK K E W + LG T++ Sbjct: 1 MALYKRGKTYWISFTAPDGKRIRCSAGTSNRQKAQQLFDKLKHEAWNRKYLGIPERHTWD 60 Query: 61 EACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 EA L W+ EK DKKSL D S + WL F + +R EI Sbjct: 61 EAALLWIREKTDKKSLKDDVSMLR-WLTPF-------------------LRSRYLDEI-- 98 Query: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRN 180 + I + E+ E P ++L++++AI A + W+WL KAP I + Sbjct: 99 --TRPMIARIGEIKKAESTPARAN---RYLSLLRAIFNRAVKIWEWLPKAPTITLYREPK 153 Query: 181 KRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEE 240 RVR+L EE +R+ DE P+ K + F++ TGLR+SN++NL W Q+D + ++ E Sbjct: 154 LRVRYLTPEEIRRVFDELPDHQKPIFTFSIMTGLRRSNVLNLRWDQVDFMQDAIIISGNE 213 Query: 241 SKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRI-DSKTSW 299 K+ + V ++ T ++L DQ+GKH ++VF + R RI D KT++ Sbjct: 214 MKAGKTHVVPMSATVKQILMDQVGKHPQYVFTY---------------RGRRIGDIKTAF 258 Query: 300 LSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTE 359 A +R GI D+R+HD RHTWAS LIQ+GVPL+ LQEMG W S EMV+RYAHL+P L E Sbjct: 259 RKALKRTGITDYRWHDNRHTWASILIQNGVPLNELQEMGAWNSAEMVKRYAHLSPQKLKE 318 Query: 360 HARKIDDIFGDNVPNMSH 377 +A+ +D+I V +S Sbjct: 319 NAQVVDNILASAVTTLSQ 336 >UniRef50_C0DT82 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DT82_EIKCO Length = 285 Score = 241 bits (616), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 130/302 (43%), Positives = 187/302 (61%), Gaps = 47/302 (15%) Query: 67 LEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAA 126 ++E DKKSLD DK +I L G+ L D++ I+ V++ Sbjct: 1 MQENQDKKSLDGDKDKIRL-LPELRGVLLSDLTRDFIHQVVNQ----------------- 42 Query: 127 IRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKRVRWL 186 K S+ TK ++ A+I+AIL +W WL+KAP +K+ KR+RWL Sbjct: 43 ------------KNCSSSTKNRYFALIRAILNKCVNEWDWLDKAPKLKLHKEPKKRIRWL 90 Query: 187 EKEEAKRLI---DECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKS 243 EEA+RL+ D P ++ +V F+LATGLR++N++NL+W+QID++R+VAW+ P+++K+ Sbjct: 91 YPEEAQRLVNALDSLPY-MQHLVIFSLATGLRQANVLNLKWEQIDLRRQVAWIYPDQAKA 149 Query: 244 NRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSAC 303 +AIGV LN TA +VL D+ + +VF H+K A+ ++ S W A Sbjct: 150 GKAIGVPLNHTAMQVLMDR-PRVSDYVFTHSKGAR------------VKSISSRVWREAL 196 Query: 304 RRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARK 363 +AGI DFR+HDLRHTWASWL+Q G PL+ L+EMGGWES+EMV+RYAHLAP HL++HAR Sbjct: 197 EKAGITDFRWHDLRHTWASWLVQQGTPLAALKEMGGWESVEMVQRYAHLAPEHLSQHARL 256 Query: 364 ID 365 ID Sbjct: 257 ID 258 >UniRef50_Q45YI6 Prophage integrase n=5 Tax=root RepID=Q45YI6_9CAUD Length = 441 Score = 240 bits (613), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 134/379 (35%), Positives = 216/379 (56%), Gaps = 46/379 (12%) Query: 1 MSLFRR--NEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 M ++R N W+ S+ G RI++S GT D+R A+EL K ++ WR +KLG+ P VT Sbjct: 49 MRFYKRQKNGPWWFDLSI-DGSRIRQSSGTSDRRAAEELAAKVASDYWRQKKLGERPAVT 107 Query: 59 FEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEI 118 ++ A + WL++ ++SL++ K R+ + + +G +++I Sbjct: 108 WDAAVVHWLKQNQHQRSLETTKQRLRWLTDQLKGENVRNID------------------- 148 Query: 119 WKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAV 178 ++++QA I + K Y PV+ T +H+A + IL + W++ P I+ Sbjct: 149 -RERIQALI-ETKAAEKYRGSPVAGATVNRHMAALSVILHHCHAE-GWIDAVPPIRKLRE 205 Query: 179 RNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNP 238 + R+ WL + +A+RL++E P L+ + +FALATGLR+SN+ LEW Q+D +R +AW++ Sbjct: 206 NSARLTWLTRAQAQRLLEELPTHLRQMARFALATGLRESNVRLLEWAQVDRERALAWIHA 265 Query: 239 EESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTS 298 +++K+ + I V LN+ A VLR+Q G+H ++VFV+ A P R + Sbjct: 266 DQAKAGKVISVPLNEDALGVLREQQGQHKRYVFVYKGA---------PIGRIY----NHA 312 Query: 299 WLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLT 358 W AC RAG+ RFHDLRHTWASW +Q+G PL +LQ++GGW S +MV RYAHL +H+ Sbjct: 313 WQKACVRAGLSGLRFHDLRHTWASWHVQAGTPLPILQQLGGWASYQMVLRYAHLGRDHVA 372 Query: 359 EHARKIDDIFGDNVPNMSH 377 +A DN+ + H Sbjct: 373 AYA--------DNIGTLRH 383 >UniRef50_C3X1P3 Phage integrase n=1 Tax=Oxalobacter formigenes HOxBLS RepID=C3X1P3_OXAFO Length = 348 Score = 236 bits (603), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 138/370 (37%), Positives = 209/370 (56%), Gaps = 46/370 (12%) Query: 1 MSLFRRNE--IWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 MSL++R + W+ + PGGKRI++S GT+DK +AQE HDK KA LW EKL P T Sbjct: 1 MSLYKRKDSSYWWIKITSPGGKRIQQSTGTEDKMKAQEYHDKIKAALWDEEKLNKKPQRT 60 Query: 59 FEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEG-IRLKDISEAKIYSAVSRMHNRKTKE 117 ++EA +RWL E +DK++ D +++ WL G + L IS + + RK KE Sbjct: 61 WQEATVRWLNETSDKRTTREDITKLR-WLHPILGNLTLDQIS----LPVIDMIRERKLKE 115 Query: 118 IWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPA 177 S T ++L +++AIL A+ +W+W++ P IK+ Sbjct: 116 -----------------------ASKATVNRYLNLVRAILNRAKNEWEWIDGFPKIKMYK 152 Query: 178 VRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVN 237 N R R L E+A +L+ E PE + +V FAL TGLR+ N++++EW+ +D++ R A+V Sbjct: 153 ESNNRNRSLTPEQADKLLAELPEHQRDIVLFALYTGLRQRNVLDMEWEHVDLELRHAYV- 211 Query: 238 PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKT 297 +K+ A+ V LND A ++ QIGKH ++VF + + +R + Sbjct: 212 -PRTKNGEALAVPLNDVAMSIITKQIGKHPQFVFSYRG-------------KHIRYANTL 257 Query: 298 SWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHL 357 +W A RAGI DFR+HDLRHTWA+W ++G P LQ +GGW++ MV RYAH+AP L Sbjct: 258 AWRKALVRAGITDFRWHDLRHTWATWQRKAGTPTHELQHLGGWKTRAMVERYAHIAPEAL 317 Query: 358 TEHARKIDDI 367 + A +++ I Sbjct: 318 SNAASRLNKI 327 >UniRef50_D2TXV6 Phage integrase n=3 Tax=root RepID=D2TXV6_9ENTR Length = 341 Score = 236 bits (602), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 206/377 (54%), Gaps = 42/377 (11%) Query: 1 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFE 60 +S ++R EIW+ S++ P +RI++S T ++++A+EL WR EKLGD+ T++ Sbjct: 6 VSTYKRGEIWWYSFTTPNKQRIRKSAKTTNQQEAKELAALEYNSYWRNEKLGDVSFHTWQ 65 Query: 61 EACLRWLEEKADKKSLDSDKSRIEFWLEHFEG-IRLKDISEAKIYSAVSRMHNRKTKEIW 119 EA L WL EK ++K + + WL+ + G +L DI++ I +KTK+I Sbjct: 66 EAVLLWLNEKPERKENRNMLYGLR-WLDQYLGKTKLIDINKYLIDEI------KKTKQI- 117 Query: 120 KQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVR 179 V +T L I+ +L+ A L+K P IK+ Sbjct: 118 -------------------SGVKNRTVNAVLQQIRVVLKCAYEH-GLLDKIPPIKLLKEP 157 Query: 180 NKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPE 239 +R+RWL + E KRL+ E PE LK +V FAL TGLR SNI NL+W Q+D+ RR AW++ + Sbjct: 158 TRRIRWLTEYEEKRLMVELPEHLKPIVNFALNTGLRMSNITNLKWSQVDINRRQAWIHAD 217 Query: 240 ESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSW 299 ESK+N+AIG+ LN A ++R+Q G H ++VF + + G W Sbjct: 218 ESKTNQAIGIPLNQAALTIIREQQGHHREYVFTYQGNRIKNAGAK-------------GW 264 Query: 300 LSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTE 359 A RAG+ DF FHDLRHTWA+ I +G PL VLQE+GGW + VR+YAHL+ L + Sbjct: 265 RKAVYRAGLGDFHFHDLRHTWATRHIMAGTPLYVLQELGGWSKADTVRKYAHLSTQFLQQ 324 Query: 360 HARKIDDIFGDNVPNMS 376 HA +I D N S Sbjct: 325 HAERIVTSGTDLTQNKS 341 >UniRef50_Q5ZTV4 Prophage dlp12 integrase n=2 Tax=Legionellales RepID=Q5ZTV4_LEGPH Length = 334 Score = 232 bits (591), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 134/365 (36%), Positives = 203/365 (55%), Gaps = 42/365 (11%) Query: 1 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDV-TF 59 M+L ++N W+ + G KRI+ S TK K+QAQ+ HD +LW K LP ++ Sbjct: 1 MALTKKNGFWWIDVTF-GDKRIRRSTRTKVKQQAQQFHDNFLQDLWS-NKHTKLPQQKSW 58 Query: 60 EEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIW 119 +A +RWLEE A K+SL +DK + F L+ + G + D A++ +++ R Sbjct: 59 VDAVVRWLEESAHKRSLVTDKFHLAF-LDPYLGQKTLDEINAELIEFIAQEKERTN---- 113 Query: 120 KQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVR 179 V+ T + L +I+AIL A ++W+W+ P+ ++ V Sbjct: 114 ---------------------VTPTTVNRMLEIIRAILNKAHKEWQWINTMPLFRMRKVE 152 Query: 180 NKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPE 239 NKR+RWL + +A +LI E P LK + F LATGLR+SN+ L+W ++D+ R+ A ++P+ Sbjct: 153 NKRIRWLSRGQANKLIQELPNHLKDMAAFTLATGLRQSNVTQLQWSEVDLIRKHALIHPD 212 Query: 240 ESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSW 299 +SK+ +AI V LN A ++ Q+G H +VF + P R + +W Sbjct: 213 QSKTKKAIPVPLNSQAIVIIEKQVGLHPTFVFTY---------FGKPVTR----CNNHAW 259 Query: 300 LSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTE 359 A RAGI+DFR+HDLRHTWASW +Q+G L LQ++GGW EMV RYAHL+ +HL Sbjct: 260 QKALIRAGIKDFRWHDLRHTWASWHVQNGTSLQELQQLGGWSEYEMVLRYAHLSSDHLKV 319 Query: 360 HARKI 364 A +I Sbjct: 320 AAERI 324 >UniRef50_Q31HE5 Tyrosine recombinase family protein n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31HE5_THICR Length = 341 Score = 227 bits (579), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 135/364 (37%), Positives = 206/364 (56%), Gaps = 41/364 (11%) Query: 1 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFE 60 MS++ RN IW+ + P GKRI+ S GT+ ++QA E K K++LWRV LG+ P + ++ Sbjct: 1 MSIYLRNNIWWTKFVAPDGKRIQRSTGTEQRQQALEFEAKLKSDLWRVHNLGEKPRLLWK 60 Query: 61 EACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 EA +R++ EK +K S +++ I +L+ + G D + RMH EI Sbjct: 61 EAVVRFMREKQNKDS--TNEVSIFKYLDRYFGHLYVD--------EIRRMH---VDEI-- 105 Query: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRN 180 +Q +++G VS T + L ++A+L A ++W+ P IK+ Sbjct: 106 --IQTRLKEG----------VSNATINRLLQKLRAVLNKAHKEWEVKCDPPYIKLLKEPK 153 Query: 181 KRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEE 240 KRVRWL + EA RLI+ PE + + AL TGLR+SN+ L+W+QID +R+ ++ ++ Sbjct: 154 KRVRWLAEPEALRLINALPEYIADMATLALETGLRESNVTLLKWEQIDFSQRIIYIEGDD 213 Query: 241 S-KSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSW 299 KS +A V L+DTA +V++ Q+GKH VF R D +R + ++ Sbjct: 214 ILKSEQAFVVPLSDTAVEVIKRQVGKHPTRVFTF-----RGD--------PIRRANTKAF 260 Query: 300 LSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTE 359 + C GIEDFR+HDLRHTWA+W +Q G PL VLQE+GGW +MV+RYAH HL + Sbjct: 261 KNTCAELGIEDFRWHDLRHTWATWHVQRGTPLEVLQELGGWTDYKMVKRYAHFTHQHLKQ 320 Query: 360 HARK 363 + + Sbjct: 321 YVNR 324 >UniRef50_Q47H88 Phage integrase n=1 Tax=Dechloromonas aromatica RCB RepID=Q47H88_DECAR Length = 338 Score = 225 bits (574), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 133/374 (35%), Positives = 212/374 (56%), Gaps = 43/374 (11%) Query: 1 MSLFRRNE--IWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 MSLF+R + W+ + G++++ S GT DK +AQE HD+ KA++W +LG + Sbjct: 1 MSLFKRKDSSCWWVKI-IIDGRKVQRSTGTDDKIKAQEFHDRLKAQMWEQNRLGVKARRS 59 Query: 59 FEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEI 118 ++EA +RWLEE ++K + + DK ++ WL+ + G + D + +V ++ Sbjct: 60 WKEAVVRWLEETSEKATHNEDKRKL-IWLDTYLGKLMLDEITLDVIDSVRAAKLKEA--- 115 Query: 119 WKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAV 178 + T ++LA++++IL A +W+W++K P +++ Sbjct: 116 -----------------------AKATTNRYLALMRSILLRARDEWEWIDKVPKVRLFKE 152 Query: 179 RNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNP 238 R R L +E+A +L++E P+ + VV FALATGLR+SN++ LEW QI++++R AW++ Sbjct: 153 SASRERSLTREQAGKLLEELPQHQRDVVLFALATGLRQSNVLQLEWSQINLEQRHAWIHA 212 Query: 239 EESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTS 298 +SK+ R I + LN+ A VL Q GKH VF T K + +T A RK Sbjct: 213 WQSKNRRPISIPLNEAAYSVLIRQKGKHESRVF--TFRGKPLESANTRAWRK-------- 262 Query: 299 WLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLT 358 A R+GI++FR+HDLRHTWA+W Q+G P LQ +GGW + MV RYAHLAP+HL Sbjct: 263 ---ALLRSGIDNFRWHDLRHTWATWQRQAGTPTHELQRLGGWRTGAMVERYAHLAPDHLA 319 Query: 359 EHARKIDDIFGDNV 372 E A +++ + V Sbjct: 320 EAASRLNSVIPGYV 333 >UniRef50_B0USU3 Phage integrase family protein n=6 Tax=Pasteurellaceae RepID=B0USU3_HAES2 Length = 351 Score = 218 bits (556), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 130/368 (35%), Positives = 204/368 (55%), Gaps = 39/368 (10%) Query: 1 MSLFRRNE--IWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 MS++RR + W+ + P GKRI+ S GT K++AQ HD+ KAE W++++L + P+ Sbjct: 1 MSIYRRTKDGPWWVDITTPSGKRIRRSAGTTVKKEAQHYHDQLKAETWKIDRLNEKPEYI 60 Query: 59 FEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEI 118 FEEA L ++ K + K ++W E F+G L ++ +I + + N T Sbjct: 61 FEEALLLYVRSAEGLKDTSTKKRHAKYWREKFQGRVLSSLTTQEILNHIP-TRNMNTN-- 117 Query: 119 WKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAV 178 KP++ TK K++ I IL A + ++K P + A Sbjct: 118 --------------------KPLTNSTKNKYIQSILRILNLAHQA-GLVDKVPHLPKNAE 156 Query: 179 RNKRVRWLEKEEAKRLIDECPEP-LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVN 237 RVRW+ KE+AK L+ + ++++ FAL TG R++ I+ + W +ID R+VA V Sbjct: 157 PPIRVRWITKEQAKDLLAKLNSDWMRAICAFALMTGARRTEILTMTWDKIDFVRKVAIVT 216 Query: 238 PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKT 297 + +KS +A + L+D A +L+ GKH K+VFV + K D I+ K Sbjct: 217 NDVAKSGKARSLLLSDEAILLLKSLRGKHAKYVFVGRENNKLND-----------INRK- 264 Query: 298 SWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHL 357 ++ +A R+ + DF FHDLRHTWASW +Q+G PL L+E+GGWE++EMV++YAHL +HL Sbjct: 265 AFNAAARKCFLLDFHFHDLRHTWASWHVQAGTPLFTLKELGGWETLEMVKKYAHLNADHL 324 Query: 358 TEHARKID 365 EHA K++ Sbjct: 325 LEHANKVE 332 >UniRef50_UPI0001A444C2 Tyrosine recombinase xerD n=1 Tax=Pectobacterium carotovorum subsp. brasiliensis PBR1692 RepID=UPI0001A444C2 Length = 348 Score = 213 bits (543), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 126/365 (34%), Positives = 196/365 (53%), Gaps = 45/365 (12%) Query: 1 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFE 60 M ++RR + ++ S P G+RI+ S GT ++ +AQE HDK K E+W+V ++G + D TFE Sbjct: 1 MPIYRRGKTYWVDISTPDGERIRRSAGTTERAKAQEYHDKLKHEVWQVARIGKIADRTFE 60 Query: 61 EACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 E + L + D+ ++ + +WL F+G + IS +I + Sbjct: 61 ELIILALRDAEDQSCFENKQIYARYWLTVFDGRIISSISGEEITN--------------- 105 Query: 121 QKVQAAIRKGKELPVYEPKP---VSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPA 177 +LP + +S T+ ++ A I L A + W+ P + Sbjct: 106 -----------KLPTHSTAKNCKLSNATRNRYRAFIIRALSLAVKS-GWIRNMPYTSMQR 153 Query: 178 VRNKRVRWLEKEEAKRLIDEC-PEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWV 236 RVRW+EK +A+ LI+ + +K VV FAL TG RK I +L+W +++ RR+A V Sbjct: 154 EPKVRVRWIEKSQARALIESLRLDWMKRVVSFALLTGARKGEIFSLKWDSVNLSRRIAIV 213 Query: 237 NPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSK 296 + +KS RA + LND A K++ + G+ +VF S VR + I+ + Sbjct: 214 TADNAKSGRARPLPLNDDAVKII-NACGRDSDYVF------------SANGVRIVEIN-R 259 Query: 297 TSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNH 356 T + +A R +GI DFRFHDLRHTWASW +Q+G PL L+E+GGWE +EMV +YAHL+ H Sbjct: 260 TDFCNALRISGIADFRFHDLRHTWASWHVQNGTPLMTLKELGGWEKLEMVNKYAHLSTEH 319 Query: 357 LTEHA 361 L + + Sbjct: 320 LRQFS 324 >UniRef50_A0YFT5 Phage integrase n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YFT5_9GAMM Length = 346 Score = 207 bits (527), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 123/360 (34%), Positives = 190/360 (52%), Gaps = 42/360 (11%) Query: 10 WYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRWLEE 69 W+ LP G+R+ +S K A E KA+ ++ + G + D T+ +A +R+L E Sbjct: 16 WWVDLVLPDGRRVCQSTRLKCLNAANEFVIDLKADAYKRSREGIVHDKTWRQAVVRYLAE 75 Query: 70 KADKKSLDSDKSRIEFWLEHFEG-IRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIR 128 A KKSL +D+ ++ L+ F G + L+ +S ++ + H R+ Sbjct: 76 NATKKSLQADRDNLKK-LDAFVGDLLLRQVSMDSLWPFI---HQRRDD------------ 119 Query: 129 KGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKRVRWLEK 188 V+ T + L +++ I A +W WLE+ P I++ +R+R+L + Sbjct: 120 -----------GVTDATINRALEVVRRIFHLARDEWCWLERFPKIRMLKEPKRRIRFLRR 168 Query: 189 EEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIG 248 E RL++E P+ ++ VV+FA+ATG R I+ LEW ++D RRVAW++ +K+ G Sbjct: 169 PEVNRLLEELPDHMRPVVQFAVATGCRMGEILKLEWNRVDFDRRVAWLDHGTTKNGDGRG 228 Query: 249 VALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGI 308 + LN+ A LR G+H +W F +A G + W A RA I Sbjct: 229 IPLNNDAVLALRSLHGQHQRWCFTFRGKPIKAIG--------------SCWKRALERAQI 274 Query: 309 EDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIF 368 E+FRFHDLRHTWASW + SG L L E+GGW+S EMV RYAHLAP HL+ A +I+ ++ Sbjct: 275 ENFRFHDLRHTWASWHVMSGTSLQELMELGGWKSYEMVLRYAHLAPEHLSSAAARIEQVW 334 >UniRef50_B0U2H0 Phage integrase n=4 Tax=Xylella fastidiosa RepID=B0U2H0_XYLFM Length = 276 Score = 205 bits (521), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 112/310 (36%), Positives = 175/310 (56%), Gaps = 40/310 (12%) Query: 59 FEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEI 118 +++A LRWL EK+ K + D +++ + +F G +L I I Sbjct: 6 WDDAALRWLSEKSRKATAHEDAAKLRWLASYFAGKKLAAIDSDLI--------------- 50 Query: 119 WKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAV 178 ++ A K E S T ++LA+I++ILR A W W+++ P I + Sbjct: 51 ----LRVATLKAAE--------TSPSTANRYLALIRSILRRAFDIWLWIDRCPHISLFPE 98 Query: 179 RNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNP 238 KRVRWL +A+ L+ E P +++V FAL+TGLR++N++ L W Q+D+ R+V + Sbjct: 99 PTKRVRWLTSVQARSLLSELPLHQRAMVIFALSTGLRQANVLKLRWDQVDLVRKVLRIPA 158 Query: 239 EESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTS 298 +++K +AI + L+ A +VL+ Q G+H++WVF + R +R + + Sbjct: 159 DQAKGRQAIRIPLSLHALQVLQAQRGQHYEWVFTYCG-------------RSIRWVNTRA 205 Query: 299 WLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLT 358 W A +RAGI+DFR+HDLRHTWASW QSG PL VLQ++GGW+S MVRRYAHL P+H + Sbjct: 206 WHQALQRAGIQDFRWHDLRHTWASWHAQSGTPLYVLQDLGGWQSESMVRRYAHLTPSHYS 265 Query: 359 EHARKIDDIF 368 +A + + Sbjct: 266 AYAEAVTEFL 275 >UniRef50_C5AEN7 Prophage integrase n=19 Tax=Burkholderia RepID=C5AEN7_BURGB Length = 355 Score = 197 bits (500), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 119/362 (32%), Positives = 195/362 (53%), Gaps = 28/362 (7%) Query: 5 RRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACL 64 +++ IW+ S P G RI+ S T+D++ AQE HD+ K++LWR +KLG+ D TFEEA + Sbjct: 7 QKSGIWHIDISAPDGTRIRRSAETRDRKAAQEYHDRLKSDLWRQDKLGERADRTFEEAAV 66 Query: 65 RWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQ 124 R+L+ A ++ + +W E F ++ ++ +I+ A+ Sbjct: 67 RFLQMCAGQRDYAGKLRHVLYWRERFGAAPVRLLTAERIFDALP---------------- 110 Query: 125 AAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKRVR 184 K + K ++ T+ +++ I+ +L +W+WL++ P ++ + RVR Sbjct: 111 ----THKLVNGAPTKLLAPGTRNRYINTIRRMLNLC-LEWEWLDRVPKLRRFEEPDIRVR 165 Query: 185 WLEKEEAKRLIDECP-EPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKS 243 W R+I + ++ A+ATG+R+S + L Q+D+ + AW+ +KS Sbjct: 166 WETPAVITRMIGALRLDWMRDAAIVAVATGMRESELFGLRLSQLDLAQCNAWITHAGAKS 225 Query: 244 NRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSAC 303 RA V LN+ A VL + +F T+ R +G P +ID K + AC Sbjct: 226 KRARSVPLNEDAMSVLERRARAATDLIF--TRGYTRDNG---PPKLIQQID-KRDFARAC 279 Query: 304 RRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARK 363 AG+ DF +HDLRHTWASW +Q G PL VL+E+GGWE++ MV++YAHLAP+HL +HA Sbjct: 280 AAAGMVDFNWHDLRHTWASWHVQHGTPLMVLKELGGWETVAMVQKYAHLAPSHLAQHAAN 339 Query: 364 ID 365 ++ Sbjct: 340 VN 341 >UniRef50_A6VKB4 Phage integrase family protein n=9 Tax=Pasteurellaceae RepID=A6VKB4_ACTSZ Length = 448 Score = 191 bits (485), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 123/360 (34%), Positives = 187/360 (51%), Gaps = 51/360 (14%) Query: 28 TKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRWLEEKADKKSLDSDKSRIEFWL 87 T+ +++AQELHDK KAELW + KL P FEEA L ++E+ +KK D+ + +W Sbjct: 125 TEVRKKAQELHDKIKAELWDLAKLNKTPPRMFEEALLLYVEDAKNKKDFDTSRRHAIYWR 184 Query: 88 EHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEP---KPVSTQ 144 F G LK+IS I LP + K +S Sbjct: 185 AVFSGWELKNISGEDI--------------------------NANLPTHSTTHKKALSPS 218 Query: 145 TKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKRVRWLEKEEAKRLIDECPEP-LK 203 TK ++ I ++ A ++ W+++ P + RVRW+ K +A LI +K Sbjct: 219 TKNRYRTSILRVMSLAYKN-GWVDRVPYVPKYVEPKVRVRWITKAQAAALIANLNLAWMK 277 Query: 204 SVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRD-Q 262 +V FAL TG R + I++L W ++D R +A V+ + +KS +A + LN A +L++ + Sbjct: 278 NVCSFALLTGARMTEILSLTWDKVDFDRSIAIVSNDVAKSGKARALPLNKIALDLLKNLK 337 Query: 263 IGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWAS 322 + +++VF H KR RID + A ++GI++FRFHDLRHTWAS Sbjct: 338 QNRRNEYVF-HRDTDKRIG----------RIDWH-DFHQALNKSGIDNFRFHDLRHTWAS 385 Query: 323 WLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKI-------DDIFGDNVPNM 375 W +Q+G PL L+EMGGWE++EMV++YAHL H+ E+A + DD DN N+ Sbjct: 386 WHVQAGTPLYTLKEMGGWETLEMVKKYAHLNATHMLEYAENVTFTPQSNDDFSQDNFYNV 445 >UniRef50_C9MEM4 Prophage integrase n=1 Tax=Haemophilus influenzae NT127 RepID=C9MEM4_HAEIN Length = 341 Score = 189 bits (479), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 117/361 (32%), Positives = 190/361 (52%), Gaps = 38/361 (10%) Query: 6 RNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLR 65 +N +W ++ P G+R++ S T DK+ AQ LHDK K E W+V++L P+ T E+A + Sbjct: 7 KNGVWQIDFTTPSGERVRCSSKTTDKKLAQHLHDKLKHEAWQVDQLNKKPEKTVEQALIL 66 Query: 66 WLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQA 125 L++ KK + ++W + L ++ I +A+ Sbjct: 67 LLKDAEHKKDKLTKIQHAKYWRDEIGNKLLSSLTSEDIQNAIP---------------TH 111 Query: 126 AIRKGKEL-PVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKRVR 184 +R GK L P + + S+ +A +LA + W++ P I + KR+R Sbjct: 112 VVRTGKILSPATQNRYRSSIMRAINLA----------KQAGWIDVVPYIAKNSEPKKRIR 161 Query: 185 WLEKEEAKRLIDECPEP-LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKS 243 W+ ++EA+RL+D +K V +FAL TG R + I+++ W +I+ ++A V + +KS Sbjct: 162 WITEKEAERLLDSLNLNWMKDVCQFALLTGARMTEILSMTWDKINFANKMAIVTGDIAKS 221 Query: 244 NRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSAC 303 R + L+D A ++++++ H+ K D S R D K A Sbjct: 222 GRGRSLPLSDDAINLIKERMKYQVSPYVFHSGTGKLRDDIS-------RRDFK----RAL 270 Query: 304 RRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARK 363 +RA I++FRFHDLRHTWASW IQ G PL VL+E+GGWE+IEMV++YAHL +HL + + Sbjct: 271 QRANIKNFRFHDLRHTWASWHIQRGTPLMVLKELGGWETIEMVQKYAHLNADHLLSYVNQ 330 Query: 364 I 364 + Sbjct: 331 V 331 >UniRef50_A4NZB4 Prophage integrase n=1 Tax=Haemophilus influenzae 22.4-21 RepID=A4NZB4_HAEIN Length = 300 Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 111/332 (33%), Positives = 165/332 (49%), Gaps = 48/332 (14%) Query: 4 FRRNE--IWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEE 61 R+N+ +W + P G+RI+ S T +KR AQE HDK K ELW+VEKL P+ T E Sbjct: 3 IRKNKYGVWEIDIATPSGERIRCSAKTTEKRLAQEYHDKLKHELWQVEKLNKKPERTIEG 62 Query: 62 ACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQ 121 A +R+LE +K + +E+W E G L ++ I +A+ H TKE Sbjct: 63 ALIRFLEVSQGQKDFATKIRHVEYWREVLAGRLLSSLTTDDILNALP-THKTGTKE---- 117 Query: 122 KVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNK 181 P+S T+ ++ + I L A++ W++ P I RNK Sbjct: 118 ------------------PISPSTQNRYRSSIMRALSIAQQS-GWIDNIPYIP----RNK 154 Query: 182 ----RVRWLEKEEAKRLIDECP-EPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWV 236 RVRW+ + +A+ LI+ + +K V FALATG R S I+ L W +ID ++++A V Sbjct: 155 EPKVRVRWISQVKAQGLINALQLDWMKDVCAFALATGARASEILTLTWDKIDFEKQIAIV 214 Query: 237 NPEESKSNRAIGVALNDTACKVLRDQIG-KHHKWVFVHTKAAKRADGTSTPAVRKMRIDS 295 + + +KS RA + L A VL+ + + +VF R G V K + Sbjct: 215 SSDIAKSGRARSLLLGTEAMDVLKRRASLRMSPYVF------HRGKGKRISEVDKYDFN- 267 Query: 296 KTSWLSACRRAGIEDFRFHDLRHTWASWLIQS 327 A +R IE+FRFHDLRHTWASW + + Sbjct: 268 -----RALKRCKIENFRFHDLRHTWASWHVGT 294 >UniRef50_A8UVD2 Phage integrase family protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UVD2_9AQUI Length = 361 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 81/232 (34%), Positives = 126/232 (54%), Gaps = 11/232 (4%) Query: 141 VSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKRVRWLEKEEAKRLIDECPE 200 V T + L +++AILR + + P IK V ++RVR+L EE K LID CP+ Sbjct: 137 VKPSTVNRELNILRAILRKVKEWGMYSGDLPRIKTYKVDDERVRYLSPEELKALIDACPD 196 Query: 201 PLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLR 260 K VVKFA TGLR S + +L W +++ V + SK+ + L+ A +VLR Sbjct: 197 WFKPVVKFACLTGLRASELFSLTWDMVNLSEGYITVPAKYSKTKETKRIPLHPKALEVLR 256 Query: 261 D-QIGKHHKWV---FVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDL 316 + + + +W+ +V T + +++ + +AC +AGI DFRFHDL Sbjct: 257 EVKARQEERWIDYGYVFTNRMGKPYSVEGQGYKRV-------FKTACEKAGIRDFRFHDL 309 Query: 317 RHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIF 368 RHT+AS+L+ SGV +QE+ S M +RYAHL+P H+ + K+ ++F Sbjct: 310 RHTFASYLVMSGVDFYTVQELMRHSSPRMTKRYAHLSPEHIRKELEKVGEVF 361 >UniRef50_Q2LV83 Phage integrase family protein n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LV83_SYNAS Length = 364 Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 111/391 (28%), Positives = 193/391 (49%), Gaps = 53/391 (13%) Query: 1 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLP--DVT 58 M L++R +W+ S+S G++ + S T+D++ A + DK K ++ + LP Sbjct: 1 MGLYKRGTVWWMSFS-HNGEQFRRSTETEDRKLAIRIFDKLKGDIAEGKWFEKLPGDSYK 59 Query: 59 FEEACLRWLEEKAD----KKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRK 114 F++ +++ E + S DKS + +F L +++ A I Sbjct: 60 FKDLMDKYMTEYSAVNKAASSYKRDKSIVTQLKSYFGEKYLTELTPAMISD--------- 110 Query: 115 TKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIK 174 +K K ++ VS++T L + A R+W + PV K Sbjct: 111 ----YKVKRRS-------------DGVSSRTINYELITMSHAFNLAIREWGLANENPVSK 153 Query: 175 IPA--VRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRR 232 + V NK RWL EE L+ E P+ L+ ++ FA+ TGLR+S I++L+W Q+DM+RR Sbjct: 154 VKKDRVTNKIERWLTSEEETNLLKESPKWLQDIIIFAIHTGLRQSEILDLKWSQVDMKRR 213 Query: 233 VAWVNPEESKSNRAI-GVALNDTACKVLRDQIGKH---HKWVFVHTKAAKRADGTSTPAV 288 ++ ++ NR I + LN+TA VL+++ +VF +T ++ + Sbjct: 214 TVTIHEQK---NRCIDTLPLNETAMTVLKNRHNPELPLEGYVFPNTLGDRKGN------- 263 Query: 289 RKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRR 348 R+ K ++ A ++A I +FRFHDLRHT+A+ LI+ G L +Q++G W+++ MV+R Sbjct: 264 ---RLLLKAFYV-ALKKANISNFRFHDLRHTFATRLIRKGADLYTVQKLGRWKTVTMVQR 319 Query: 349 YAHLAPNHLTEHARKIDDIFGDNVPNMSHSE 379 YAH L +DD+ + N+S S+ Sbjct: 320 YAHHHTESLRAAIEMMDDVEKPIITNLSQSQ 350 >UniRef50_C6HUB8 Phage integrase family protein n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HUB8_9BACT Length = 347 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 114/362 (31%), Positives = 184/362 (50%), Gaps = 52/362 (14%) Query: 1 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLP--DVT 58 M L++R +W+ +S+ G K+I+ S GT +++ A +++ K E+ + LP + T Sbjct: 1 MGLYKRGALWWMRFSVQG-KQIRRSTGTSERKLADKVYKKVLGEIAEGDWFDRLPGEEKT 59 Query: 59 FEEACLRWLEEKA----DKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRK 114 E ++LEE + KS DK+ L+ F + L +I +I+ Sbjct: 60 LSELFDKYLEEHSKPNKSSKSYIRDKAISLRMLKEFGDVTLIEIGTEQIFD--------- 110 Query: 115 TKEIWKQKVQAAIRKGKEL-PVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVI 173 +K+K R+ + L P K ++ A +A++ W WLE PV Sbjct: 111 ----YKKK-----RREENLAPASLNKEIAFLRHAFEMAVL----------WGWLEVNPVS 151 Query: 174 KIP--AVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQR 231 +IP V+N+ RWL EE +RL+ CPE L+ +V FAL TG R++ +++L W Q+D R Sbjct: 152 RIPREKVKNRMERWLTGEEEERLLKACPEWLRDMVIFALNTGFRQNEMLSLTWNQVDWDR 211 Query: 232 R--VAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVR 289 + + W + K+N V +N+ A VL+ +IGK H ++GT A Sbjct: 212 KAILFW----DQKNNGRDTVPVNEKAIDVLK-RIGKVKSLSSGHVFLT--SNGTPFIARN 264 Query: 290 KMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRY 349 +R S+ A +A I +FR+HDLRHT+A+ L+ +GV L +Q +G W S+ MV RY Sbjct: 265 VVR-----SFSLALEKAKITNFRWHDLRHTFATRLVHAGVDLYTVQRLGRWRSLSMVMRY 319 Query: 350 AH 351 AH Sbjct: 320 AH 321 >UniRef50_A1A8J6 Prophage DLP12 integrase n=5 Tax=Escherichia RepID=A1A8J6_ECOK1 Length = 135 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 72/99 (72%), Positives = 80/99 (80%) Query: 170 APVIKIPAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDM 229 + V + +R R L+K + KRLIDE P+PLKSVVKFAL T LRKSNIINLEWQQIDM Sbjct: 29 STVCRQTCMRWNGTRDLQKNQEKRLIDESPKPLKSVVKFALVTVLRKSNIINLEWQQIDM 88 Query: 230 QRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHK 268 QR+VA VNPE+SKSNRAIGVALNDTA KVL DQ GKHHK Sbjct: 89 QRQVARVNPEDSKSNRAIGVALNDTASKVLHDQTGKHHK 127 >UniRef50_A8UUR8 Phage integrase family protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UUR8_9AQUI Length = 351 Score = 134 bits (338), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 120/391 (30%), Positives = 186/391 (47%), Gaps = 59/391 (15%) Query: 3 LFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLP-DVTFEE 61 L +R +++Y + + G+R E +G K A+E+ ++ ++ + R E + TF + Sbjct: 8 LRKRGKVFYFEF-MYKGQRYYEKIGVVSKTVAKEIANEIRSRIIRGEYIPQKERKTTFSD 66 Query: 62 ACLRWLEEKADKKSLDSDKSRIEFW-----LEHFEGIRLKDISEAKIYSAVSRMHNRKTK 116 A ++E KKS +KS+ E LE F G +RK Sbjct: 67 AVRVYIEW-YRKKSTAREKSKEENIRRARRLEEFFG-------------------SRKLS 106 Query: 117 EIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIP 176 +I V++ +K E V KP QT L ++ +ILR A+ + + P KI Sbjct: 107 QISTFLVESYKKKRLEEGV---KP---QTINMELNILGSILRRAKEAGLFDGELP--KIE 158 Query: 177 AVRN---KRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRV 233 RN +R+R+L + EA+RLI CPE K VV FAL TGLR I +L W+ +D +R V Sbjct: 159 KFRNADRERLRFLSEREAQRLISACPEWFKPVVIFALNTGLRAGEIFSLRWEDVDFERGV 218 Query: 234 AWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKA--AKRADGTSTPAVRKM 291 V SKS + + +N T K+L+ K H ++F + K D T Sbjct: 219 ITVREASSKSGKVRKLPMNATVKKLLQGLERKEHGYIFTNRFGLPYKYEDKT-------- 270 Query: 292 RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAH 351 + + +AC +AGI+DFRFHDLRHT+ASW+ + + +Q + G S + +RYAH Sbjct: 271 ---YRRVFKTACEKAGIKDFRFHDLRHTFASWVAMNSKDIYAVQNLLGHSSPSVTKRYAH 327 Query: 352 LAPNHLTEHARKIDDIFGDNVPNMSHSEIME 382 L ++L ++VPN S E Sbjct: 328 LTDDYLRSVV--------ESVPNFGSSSASE 350 >UniRef50_A1AN30 Phage integrase family protein n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1AN30_PELPD Length = 367 Score = 134 bits (338), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 101/370 (27%), Positives = 172/370 (46%), Gaps = 46/370 (12%) Query: 2 SLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLP------ 55 ++RR + ++ +Y GK+ ES +K K A L RK E+ G P Sbjct: 7 GIYRRGKTFWITYMGVDGKQQWESTRSKLKADADYLLACRKKEVAE----GITPVTFNRK 62 Query: 56 --DVTFEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNR 113 TF++ ++LE ++ S R+ F +RL DI+ ++ R + Sbjct: 63 KYTTTFDQLAEKYLEYCKAQRDYKSKAGRVRRLQRTFGEMRLIDITLEEL----ERYQSA 118 Query: 114 KTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVI 173 + E + K + + G VS T + L +K + AE+ W + + + Sbjct: 119 RCTEAKQPKKEGGVSSG---------AVSPATVNRELTALKNMFTKAEQ-WGLIPDSTLK 168 Query: 174 KIPAVR-----NKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQID 228 + VR N+R+R+L E L+D C L+ +V FAL TG R+ I++L W +D Sbjct: 169 TVRKVRLTKENNRRLRFLAVAEMTALVDSCSRGLREIVVFALNTGCRRGEILSLTWDHVD 228 Query: 229 MQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGK-HHKWVFVHTKAAKRADGTSTPA 287 ++ ++ +SK+ + + +N + + + + +VF + R Sbjct: 229 LKH--GFIRIADSKNGESRDIPINAALADMFKGVVRRIDSPYVFTNPDTGTRYQ------ 280 Query: 288 VRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVR 347 D K S+ +ACRRA I +F FHDLRHT+AS L+ +GV L+ + + G +S+ M Sbjct: 281 ------DVKRSFATACRRAAIMNFHFHDLRHTFASHLVMNGVDLTTVSRLLGHKSLTMTL 334 Query: 348 RYAHLAPNHL 357 RY+HLAP+HL Sbjct: 335 RYSHLAPDHL 344 >UniRef50_Q1IPY0 Phage integrase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IPY0_ACIBL Length = 359 Score = 134 bits (337), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 83/232 (35%), Positives = 126/232 (54%), Gaps = 20/232 (8%) Query: 141 VSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKIPAVRNKRVRWLEKEEAKRLIDEC 198 VS T AK L +K + R +W+ L P +K P V RVRWL+ EE + L+ C Sbjct: 133 VSPATVAKELVTLKHLFRLCV-EWELLVLNPATGVKAPKVAPGRVRWLQPEELRALLQAC 191 Query: 199 PEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKV 258 P+ L+ + A ATG+R+S ++ + W D+ RR + ++K+N + V LN +A V Sbjct: 192 PDWLRPIAGLAAATGMRRSEVLGVRW--FDVDRRNGCLTLRQTKNNESRIVFLNQSALHV 249 Query: 259 LRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRH 318 + D + K K++++ TP M +L CR GIEDFR+HDLRH Sbjct: 250 I-DSLRK--------GKSSEKLFPKVTPEQVSM------GFLRTCRELGIEDFRWHDLRH 294 Query: 319 TWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIFGD 370 +AS L QSG L + E+ G + + M +RY+HL+P HL+ AR+ D + G+ Sbjct: 295 CFASLLRQSGADLQDVAELLGHKDLRMTKRYSHLSPAHLSAAARRFDAVLGE 346 >UniRef50_B5YIK4 Site specific recombinase n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YIK4_THEYD Length = 345 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 113/370 (30%), Positives = 183/370 (49%), Gaps = 63/370 (17%) Query: 1 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEK-------LGD 53 M L++R IW+ S ++ G K+ + S T D+++A E++ K EL K G+ Sbjct: 1 MGLYKRGNIWWFSVTIKG-KQFRFSTKTTDRKKATEIYAKALLELDNPTKDVENQISFGE 59 Query: 54 LPDVTFEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNR 113 FE L + E +A S S K + E F+ I + I+ Sbjct: 60 F----FENQYLPFSERQA---SHQSKKYYFKVIPEWFKKIPINQIT-------------- 98 Query: 114 KTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAA----ERDWKWLEK 169 T++I + +Q + KG+ P S + +A IK LR A + + L++ Sbjct: 99 -TRDI--ELLQGDLLKGRT-------PASVN---RIIATIKHSLRKAYEWELTEEETLKR 145 Query: 170 APVIKIPAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDM 229 +K +R+R+L EE +LI+ LK ++ AL TG+RK I++L W QID+ Sbjct: 146 VQRVKPLKGEVQRLRFLSLEECHKLIEVAEPHLKPIIITALNTGMRKGEILSLTWSQIDL 205 Query: 230 QRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHH---KWVFVHTKAAKRADGTSTP 286 + +++ E++K+ + +NDT + RD I +VF++ + KR Sbjct: 206 KH--GFIHLEKTKNGERRDIPMNDTLKILFRDLIKNRRLDSDYVFLNPETGKRLT----- 258 Query: 287 AVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMV 346 D K S+ +AC+RAGI DFRFHDLRHT+AS LI +GV L +QE+ G ++I+M Sbjct: 259 -------DIKRSFRTACKRAGITDFRFHDLRHTFASHLIMNGVDLKTVQELLGHKTIKMT 311 Query: 347 RRYAHLAPNH 356 +Y+HL+ H Sbjct: 312 LKYSHLSKAH 321 >UniRef50_Q9T1P3 Integrase n=4 Tax=root RepID=Q9T1P3_BPD3 Length = 369 Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 98/392 (25%), Positives = 177/392 (45%), Gaps = 56/392 (14%) Query: 4 FRRNE--IWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEE 61 ++RN+ W+ S+ GK ++ S GT D A+ L + +A+ W+ +++G P TFEE Sbjct: 3 YKRNDSAYWWISFKSATGKLVRRSSGTADYSAAKALEQQERAKAWKEKEMGVNPPRTFEE 62 Query: 62 ACLRWLEE-KADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 + +L+ + ++S ++ RI+ E+F G + D+ I + Sbjct: 63 VIIPYLQHARQHQRSYETTVHRIKPLREYFAGRVVNDLGGQDI------------RGYGA 110 Query: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRN 180 ++ A S T + LA + A + + +W PV K +R Sbjct: 111 HRLDAG--------------ASPATINRELAALSAAINHCNTELEWALPNPV-KGRKMRE 155 Query: 181 K--RVRWLEKEEAKRLI-----DECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRV 233 R RWL + E + L + L+ ++ A+ TG R+ ++ LEW+++D R+ Sbjct: 156 AEGRDRWLTRAEVEALCRAARGQKFGPMLEDFIRLAVNTGCRREEMLGLEWRRVDFANRL 215 Query: 234 AWVNPEESKSNRAIGVALNDTACKVL------RDQIGKHHKWVFVHTKAAKRADGTSTPA 287 ++ +K+ + + +N+ A L R + WVF RA+G Sbjct: 216 IYLEASHTKAGKRRSIPINEGAMAALKRRMAFRSETSPECPWVFA------RANGDRV-- 267 Query: 288 VRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVR 347 I + AC+ A I DF HDLRHT A+WL+ +GVPL+ ++++ G ++ M Sbjct: 268 -----ISLSAGFKQACQAAKIADFTIHDLRHTCAAWLVSAGVPLADVRDLLGHSTVAMTE 322 Query: 348 RYAHLAPNHLTEHARKIDDIFGDNVPNMSHSE 379 RYAHLAP + + +D + + H++ Sbjct: 323 RYAHLAPARVRDAVGVLDQVREGRISRSVHAD 354 >UniRef50_B9JRM6 Integrase protein n=1 Tax=Agrobacterium vitis S4 RepID=B9JRM6_AGRVS Length = 343 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 105/358 (29%), Positives = 161/358 (44%), Gaps = 51/358 (14%) Query: 10 WYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRWLEE 69 WY ++ G + E+ GT DK++A+E+ +R+ E+ G TF EA + +LEE Sbjct: 14 WYIRGTIRG-VSVDETTGTDDKKRAEEIRIRRETEILDRRIHGIRKTATFLEASVMYLEE 72 Query: 70 KADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRK 129 + +D +F L +I + I A ++ +A+ R Sbjct: 73 GGASRFVD-------VVARYFGTTPLSEIDQPAIDRAARVLY---------PDAKASTRN 116 Query: 130 GKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKRVRWLEKE 189 + V+ P + A+L A + K + P+I+ PA R+RW+ E Sbjct: 117 RQ---VFTP--------------VSAVLNFAAK--KKMCDKPIIERPAQPKGRIRWITIE 157 Query: 190 EAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQR-RVAWVNPEESKSNRAIG 248 EA+ LID C LK +V F TG R S + L+W+ +D+ R VA++ ++K+ G Sbjct: 158 EAQSLIDACAPHLKPLVTFLFYTGARLSEALYLDWRDVDLSRSHVAFL---DTKTGDDRG 214 Query: 249 VALNDTACKVLRDQIGKHHKWVFVHTKAA--KRADGTSTPAVRKMRIDSKTSWLSACRRA 306 V L+ +L + H + A +R DG KT + ACRRA Sbjct: 215 VPLHSGVVAMLAN---------LPHREGAVFRRHDGKPYEVKEDGGGQIKTGFKGACRRA 265 Query: 307 GIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKI 364 GI DF HD RHTWA+W + L L +GGW+S MV RYAH+ + L I Sbjct: 266 GISDFHPHDCRHTWATWHYAANRDLITLMRLGGWKSERMVLRYAHINVDDLASSIESI 323 >UniRef50_Q1Q549 Similar to site-specific tyrosine recombinase n=2 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q549_9BACT Length = 351 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 110/371 (29%), Positives = 179/371 (48%), Gaps = 62/371 (16%) Query: 3 LFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKL----GDLPDVT 58 +++R+ IW+ G++I+ SL TK+K+ A+ + K + EL + GDL T Sbjct: 1 MYKRDGIWWTCIR-HRGRKIQRSLETKNKKLAESIEAKLRTELIEGKYFDKYEGDLK--T 57 Query: 59 FEEACLRWLEEKADKKSLDSDKSRI---EFWLEHFEGIRLKDISEAKIYSA-VSRMHNRK 114 F++ R+++E A K SL+ KS + L F + L I+ K+ VSR Sbjct: 58 FKDLMERFMKEHAPKVSLNMQKSYTTSAKHLLSFFGDLSLLAITPKKVNDYKVSR----- 112 Query: 115 TKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIK 174 K + K KP + K LAM+ A ++W+W+ P K Sbjct: 113 -KNLGK------------------KPATIN---KELAMLSKAFCLAVKEWEWIRDNPASK 150 Query: 175 IPAVR--NKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRR 232 I + N+R RWL +E KRL++ PE L ++ F L TGLR+ +++L W ++D+ R+ Sbjct: 151 ISKEKEANERDRWLSDDEEKRLLENSPEWLSDIIVFDLHTGLRQDELLSLTWDRVDLFRK 210 Query: 233 VAWVNPEESKSNRAIGVALNDTACKVLRDQI---GKHHKWVF---VHTKAAKRADGTSTP 286 V + +ESK+ + + LN + +L ++ +VF V TK +R Sbjct: 211 VIII--QESKNGKPRTIPLNQISLDILMEKTKVRSLKGDFVFPSSVMTKMNRRN------ 262 Query: 287 AVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMV 346 VR I A +A I++F FHD+RH +A+ L Q GV + + ++ G +I M Sbjct: 263 LVRAFDI--------AKEKASIQNFHFHDVRHCFATRLAQRGVDIYRISKLLGHLNITMT 314 Query: 347 RRYAHLAPNHL 357 +RYAH P L Sbjct: 315 QRYAHHCPESL 325 >UniRef50_C6MS46 Integrase family protein n=1 Tax=Geobacter sp. M18 RepID=C6MS46_9DELT Length = 356 Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 86/308 (27%), Positives = 148/308 (48%), Gaps = 42/308 (13%) Query: 74 KSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKEL 133 KS D+ + ++ +W + L D++ A I + K+ A KG L Sbjct: 82 KSKDTQEGQLLWWKDEIGLYTLADVTPAMIGEC-------------RDKLLAGKTKGGGL 128 Query: 134 PVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKIPAVRNKRVRWLEKEEA 191 S T +++A + A +W W+E +P+ +K P RVR+L +E Sbjct: 129 R-------SPATTVRYMAALSHAFSVAVNEWGWVEDSPMRKVKKPKEPRGRVRFLTDDER 181 Query: 192 KRLID----ECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAI 247 RL++ C L VV AL+TG+R S I+NL+W+ ID++R+ ++ ++ R + Sbjct: 182 NRLLEAAKRSCNNCLYPVVLLALSTGMRFSEIMNLKWKDIDLKRKCLILHDTKNGERRNV 241 Query: 248 GVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVR--KMRIDSKTSWLSACRR 305 V + H + +K + P++ M + + SW +A R Sbjct: 242 PV-------------VNLAHSVLTERSKVRRLGTELVFPSISDPTMPSNLRKSWAAAVRD 288 Query: 306 AGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKID 365 A +EDFRFHDLRH+ AS+L +G L+ + E+ G +++ MV+RYAHL+ H + ++ Sbjct: 289 ANLEDFRFHDLRHSAASYLAMNGATLAEIAEVLGHKTLAMVKRYAHLSEQHTSRVVASMN 348 Query: 366 D-IFGDNV 372 + IFG + Sbjct: 349 EKIFGGTL 356 >UniRef50_Q5X3B3 Putative uncharacterized protein n=2 Tax=Gammaproteobacteria RepID=Q5X3B3_LEGPA Length = 353 Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 78/235 (33%), Positives = 125/235 (53%), Gaps = 19/235 (8%) Query: 142 STQTKAKHLAMIKAILRAAERDWKWLEKAPVIKI--PAVRNKRVRWLEKEEAKRLIDEC- 198 S T +++A + A ++W WLE +P+ ++ P RVR+L +E RL+ EC Sbjct: 130 SPSTVVRYMASLSHAFTIAVKEWGWLEDSPMRRVTKPKEPRGRVRFLSDDERARLLSECK 189 Query: 199 ---PEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTA 255 + L V AL+TG RK I+ L W+ +D R + + E+K+ + L A Sbjct: 190 KSDSQYLYLAVVLALSTGGRKMEILGLSWKNVDFNRSI--ITLHETKNGERRVLPLTGHA 247 Query: 256 CKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHD 315 D + +H K V++ TP ID +T + +A +RAGI DFR+HD Sbjct: 248 L----DLMKQHAKVRHVNSDLVFPGKDFKTP------IDLRTPFETALKRAGITDFRWHD 297 Query: 316 LRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTE-HARKIDDIFG 369 LRH+ AS+L +G L+ + E+ G ++++MV+RYAHL+ H ++ AR + IFG Sbjct: 298 LRHSCASYLAMNGASLAEIAEILGHKTLQMVKRYAHLSEAHTSKVVARMNEKIFG 352 >UniRef50_A1K6M5 Site-specific recombinase, phage integrase family n=1 Tax=Azoarcus sp. BH72 RepID=A1K6M5_AZOSB Length = 358 Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 89/311 (28%), Positives = 139/311 (44%), Gaps = 41/311 (13%) Query: 58 TFEEACLRWLEEKADK-KSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTK 116 T E ++ + AD KS ++ + + +W + F L D+S A I R+ R T Sbjct: 61 TLHELAEKYEQAVADSLKSFEARRGHLAYWRQAFGSSALADVSPALIAEHRDRLTKRTT- 119 Query: 117 EIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIP 176 E VS T +++A + A+ A ++ +W+E PV ++ Sbjct: 120 --------------------ERGTVSLATVNRYIATLSALFTFAVKELQWVEANPVERVR 159 Query: 177 AVRNK--RVRWLEKEEAKRLIDECPEP----LKSVVKFALATGLRKSNIINLEWQQIDMQ 230 RVR+L +E L+ C E L V AL+TG R++ I L WQQ+D Sbjct: 160 KFGESPGRVRYLSDQERAALLTACRESRNPYLYPAVVLALSTGARQAEITTLRWQQVDFA 219 Query: 231 RRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRK 290 RR + E+K+ + L A +LRD K D P Sbjct: 220 RRTIVLREGETKNGAGRVLPLTGEALDLLRDL-----------AKVRDIRDDRVFPVAST 268 Query: 291 MRIDS--KTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRR 348 R + K +W A +RAGI DFR+HDLRHT AS+L +G+ + ++ G ++++M R Sbjct: 269 TRAFNSIKGAWDGAVKRAGISDFRWHDLRHTAASYLTMAGIGSMEVAKVLGHKTLQMTAR 328 Query: 349 YAHLAPNHLTE 359 Y+HL+P E Sbjct: 329 YSHLSPERTVE 339 >UniRef50_B7KWK2 Integrase family protein n=1 Tax=Methylobacterium chloromethanicum CM4 RepID=B7KWK2_METC4 Length = 354 Score = 117 bits (293), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 105/372 (28%), Positives = 163/372 (43%), Gaps = 53/372 (14%) Query: 2 SLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEE 61 L+RR ++W+ + G +++S T K +AQ ++ AE + GD+P FEE Sbjct: 3 GLYRRGDVWWVRFRR-NGTHVRKSAKTTRKTEAQAYLERLLAEQAGRAR-GDVPRHRFEE 60 Query: 62 ACLRWLEE-KADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 A R+ +E + K+L S +S F + L +I+ I Sbjct: 61 AVERYFQETRVRPKTLSSYRSNSRTLAPSFNALHLDEITRRAI----------------A 104 Query: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIP--AV 178 + V A R G V+ T + LA + I A R W WL+ PV + Sbjct: 105 EFVTARKRTG----------VTDTTIRRDLAFLSVICSACGR-WGWLDTNPVTTFGKRGL 153 Query: 179 RNKR--VRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWV 236 R R R+L + E RL+ L+ + A+ TG+R+ + L ID+ RR V Sbjct: 154 REGRPRTRFLTQAEFDRLLAAASPSLRPAITLAVETGMRREELFGLTITAIDLNRRE--V 211 Query: 237 NPEESKSNRAIGVALND---TACKVLRDQIGK-HHKWVFVHTKAAKRADGTSTPAVRKMR 292 + E +K+ V L+D T K L D+ G+ ++F + DG+ Sbjct: 212 HLERTKTGSPRRVPLSDKAITTIKGLLDEPGRPRSSYLFC------KGDGSRY------- 258 Query: 293 IDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHL 352 D K + ACRRA + + R+HDLRHT+ASW +Q G L L + G ++M RY HL Sbjct: 259 CDMKKGFGGACRRAKVTNMRWHDLRHTFASWYVQRGGDLYRLSRILGHSGLQMTARYGHL 318 Query: 353 APNHLTEHARKI 364 L E ++ Sbjct: 319 RVEDLHEEIGRV 330 >UniRef50_A3P0T5 Site-specific recombinase, phage integrase family n=17 Tax=Burkholderia RepID=A3P0T5_BURP0 Length = 172 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 63/163 (38%), Positives = 101/163 (61%), Gaps = 7/163 (4%) Query: 202 LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRD 261 L++ V+ AL+TG RK+ ++ LEW ++D +R + + E +K+ + V LN A LRD Sbjct: 14 LRNFVRLALSTGCRKNELLALEWHRVDFERSLFRLECEHTKNGKRRLVPLNSGALLALRD 73 Query: 262 QIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWA 321 Q WV H ++ +S+ R++ + + +++AC RAGIE+FR HDLRHT+A Sbjct: 74 Q----RDWVARHCAGSEWVFASSSG--RRVG-NLQKGFVAACARAGIENFRIHDLRHTFA 126 Query: 322 SWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKI 364 SWL+ GV L V++++ G SI + RYAHL+P+H E +K+ Sbjct: 127 SWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREAVQKL 169 >UniRef50_D2L4J5 Integrase family protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L4J5_9DELT Length = 296 Score = 111 bits (278), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 117/223 (52%), Gaps = 19/223 (8%) Query: 139 KPVSTQTKAKHLAMIKAILRAAERDWKWLE-KAPVIKIPAVRNKRVRWLEKEEAKRLIDE 197 K +S QT L++++ +L A++ W L+ K P +P NKRVR+L K EA L+ E Sbjct: 63 KRLSPQTITHCLSLLRRVLHRAQQ-WDLLDAKLPNFDMPKFDNKRVRFLTKSEANTLLVE 121 Query: 198 CPEPLKS-----VVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALN 252 LKS + AL TGLR I +L D ++ E+KSNR + LN Sbjct: 122 LS--LKSQLWHDISLLALHTGLRAGEIFSLRPSHFDQPNSALYI--FETKSNRNRSIPLN 177 Query: 253 DTACKVLRDQIGKHHKWVFV-HTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDF 311 TA +L+ +VF H + K + + AV+ + ++ T RR + Sbjct: 178 ATARHILKANCAGSTDFVFKEHDRQIKNVNRIFSTAVQTCQFNTPTQ----DRRQRVV-- 231 Query: 312 RFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAP 354 FH LRHT+ASWL+Q+G PL V+ ++ G +S++M RYAHLAP Sbjct: 232 -FHTLRHTFASWLVQAGTPLIVVSQLLGHKSLQMTSRYAHLAP 273 >UniRef50_B6ALQ5 Integrase n=1 Tax=Leptospirillum sp. Group II '5-way CG' RepID=B6ALQ5_9BACT Length = 367 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 104/361 (28%), Positives = 159/361 (44%), Gaps = 54/361 (14%) Query: 9 IWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRWLE 68 IW+ Y+ G K I+ +G K A+ + + +A++ + P V A L Sbjct: 19 IWWVRYTWQG-KEIRRKIGRKT--DAKNYYARVRAQILEGRYEPEKPRVVTLGAWLGEYM 75 Query: 69 EKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIR 128 E SL + +FW G + I A++ +++Q ++R Sbjct: 76 ETVTSVSLSQQRGYAKFWTNTLGGRPIASIKTAEL-----------------ERIQVSLR 118 Query: 129 KGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKRVRWL-- 186 + +L + T +H A +K A RD +++ PV + + + R + Sbjct: 119 EAGKL--------APSTINRHFAFLKHTFNIALRD-GLIKENPVKGVHFFKEPKGRTVFL 169 Query: 187 -EKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNR 245 E +EAK PE V+ A+ TGLR+S NL W+ IDM RV V SKS Sbjct: 170 SEADEAKLKESFSPE-YWPYVELAIHTGLRQSEQFNLRWENIDMTSRVLTV--PVSKSGL 226 Query: 246 AIGVALNDTACKVLRDQIGKH---HKWVFV----HTKAAKRADGTSTPAVRKMRIDSKTS 298 V LNDTA VLRD + WVF HTK DG + K Sbjct: 227 TRHVPLNDTALAVLRDLKARQVILSPWVFPSPVDHTKPR---DGNAF---------YKKV 274 Query: 299 WLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLT 358 ++ A +AG+ +H LRHT+ S L+Q+GVPL+ +Q++ G + YAHL+P+HL Sbjct: 275 FVPAIEKAGLSGVVWHTLRHTFCSRLVQAGVPLTTVQKLAGHKDYSTTLIYAHLSPDHLH 334 Query: 359 E 359 E Sbjct: 335 E 335 >UniRef50_A7MJZ5 Putative uncharacterized protein n=3 Tax=Enterobacteriaceae RepID=A7MJZ5_ENTS8 Length = 81 Score = 107 bits (266), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 49/62 (79%), Positives = 54/62 (87%) Query: 326 QSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIFGDNVPNMSHSEIMEDIK 385 +GVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHAR+ID I G VPNMSH+ ED+K Sbjct: 20 HTGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARQIDSILGFCVPNMSHTGNKEDLK 79 Query: 386 KA 387 +A Sbjct: 80 EA 81 >UniRef50_Q1MRZ7 Prophage DLP12 integrase (Fragment) n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MRZ7_LAWIP Length = 388 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 75/240 (31%), Positives = 123/240 (51%), Gaps = 22/240 (9%) Query: 142 STQTKAKHLAMIKAILRAAERDWKWL---EKAPVIKIPAVRNKRVRWLEKEEAKRLID-- 196 S QT LA+++ ILR E++ V ++P V N + L + + K L++ Sbjct: 156 SPQTVLNTLALLRRILRFGEKNGFCTLPDRSQLVFEMPKVDNIKTENLTETQLKALMEAL 215 Query: 197 --ECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDT 254 E + + S ++ AL TG+RK ++ LEW +D ++ + + + +K + + +++ Sbjct: 216 DAETDQVMASCLRLALVTGMRKGALLALEWTDLDFEQGIITLQGKSAKKGKTAYIPMSE- 274 Query: 255 ACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFR-F 313 A K++ +++ ++VF +TK KR+D S P RI K + DFR F Sbjct: 275 AAKIILEKLPHTSRYVFPNTKGEKRSDFRSMPN----RIKQKAQLPA--------DFRPF 322 Query: 314 HDLRHTWASWLIQSG-VPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIFGDNV 372 H LRHT+AS L SG V L LQ++ S +M +RYAHLA + AR DDI N+ Sbjct: 323 HGLRHTYASHLASSGKVDLYTLQKLLTHSSPQMTQRYAHLADEAMKRAARVADDILTSNM 382 >UniRef50_C0GWH6 Integrase family protein n=3 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GWH6_9DELT Length = 394 Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 68/219 (31%), Positives = 116/219 (52%), Gaps = 19/219 (8%) Query: 145 TKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAV--RNKRVRWLEKEEAKRLIDE---C- 198 T +++A++K I AE+ W +EK P I + N + R+L EE KRL+ E C Sbjct: 165 TVNRYMALVKYIFNLAEK-WDVIEKTPARHISRLEDNNCKERYLSSEETKRLLGELKNCK 223 Query: 199 PEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKV 258 + + +++ + TG RKS ++NL WQ++D+++ + + PE +K+ + L+ A ++ Sbjct: 224 SQVVPDIIELLILTGARKSEVVNLPWQELDLKQGLWTIPPERNKAKTRKTIPLSQGALRI 283 Query: 259 LRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRH 318 L + ++VF + K T P ++ +W + AGI D R HDLRH Sbjct: 284 LEKRKHNGSEYVFPNPK-------TGGP-IKHFH----NTWDRVRKNAGIPDVRIHDLRH 331 Query: 319 TWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHL 357 +AS L+ SG L +Q++ G +I +RYAHL + L Sbjct: 332 NFASLLVNSGRSLYEVQKLLGHSNISTTQRYAHLTQDTL 370 >UniRef50_C5SDU6 Integrase family protein n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SDU6_CHRVI Length = 361 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 76/285 (26%), Positives = 133/285 (46%), Gaps = 47/285 (16%) Query: 82 RIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPV 141 R+++W +RL D++ AKI E+ K A + Sbjct: 91 RLDYWCAELGHLRLSDVTPAKIAGC--------RDELLTSKAPATVHG------------ 130 Query: 142 STQTKAKHLAMIKAILRAAERDWKWLEKAPVIKI--PAVRNKRVRWLEKEEAKRLIDEC- 198 +LA++ ++L + W W++++P+ + P+V N R R+L ++E RL++ C Sbjct: 131 -------YLAVLASVLTTCVKRWHWVKESPMAHVDKPSVANGRTRFLSQDELSRLLEACR 183 Query: 199 ----PEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDT 254 P+ +VV A+ TG R+ ++ L W+ +D+ + V ++ + + + GV Sbjct: 184 ASESPDLYLAVV-LAITTGARRGELLGLRWRDVDLVKDVLYLRVDNETTTKG-GVRAVRI 241 Query: 255 ACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRI------DSKTSWLSACRRAGI 308 A +V + + + K AD T V R+ D +T + +A RRAGI Sbjct: 242 ASQVKPILEARQAGY-----RRGKVADITGAALVFPSRVSTRQPVDLRTPFRTALRRAGI 296 Query: 309 EDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLA 353 E FR+HDLRH+ AS++ G L + + G S + +RYAHLA Sbjct: 297 EGFRWHDLRHSAASFMAAHGASLVEIGAVLGHRSAQTTKRYAHLA 341 >UniRef50_Q2STI2 Site-specific recombinase, phage integrase family n=5 Tax=pseudomallei group RepID=Q2STI2_BURTA Length = 159 Score = 104 bits (260), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 58/158 (36%), Positives = 92/158 (58%), Gaps = 13/158 (8%) Query: 202 LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRD 261 + + V+ AL+TG RK+ ++ L+W+++D +R ++ E +K+ + V LN A LRD Sbjct: 1 MANFVRLALSTGCRKNELLALDWRRVDFERSFLRLDAEHTKNGKRRVVPLNSAALSALRD 60 Query: 262 QIGKHHKWVFVHTKAAKRADGTS--TPAVRKMRIDS-KTSWLSACRRAGIEDFRFHDLRH 318 Q WV ++ G+ P RI + + + +AC R GIE+FR HDLRH Sbjct: 61 Q----RDWV------ERKCSGSEWVFPGWSGKRIQTLQKGFNAACARVGIENFRIHDLRH 110 Query: 319 TWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNH 356 T+ASWL+ GV L V++++ G SI + RYAHL+P+ Sbjct: 111 TFASWLVMEGVSLYVVKDLLGHSSISVTERYAHLSPDQ 148 >UniRef50_B7RVJ7 Site-specific recombinase, phage integrase family n=4 Tax=unclassified Gammaproteobacteria (miscellaneous) RepID=B7RVJ7_9GAMM Length = 392 Score = 104 bits (259), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 80/234 (34%), Positives = 113/234 (48%), Gaps = 24/234 (10%) Query: 141 VSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVR--NKRVRWLEKEEAKRLI--- 195 +S T HL +I+ L A DW+ LE PV K+ N+ R+L EE +RL+ Sbjct: 163 LSPATADHHLKLIRQALNLAV-DWELLEANPVAKVKLFNQDNQVERYLSDEEMQRLLKVL 221 Query: 196 -DECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDT 254 + + +V+ F L+TG R S ++ EW ID + RV + SKS + V LND Sbjct: 222 KTDSNRVVCNVILFLLSTGARVSEALSAEWSDIDRKNRVWVIQATNSKSKKKRSVPLNDV 281 Query: 255 ACKVLR--DQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFR 312 A VL D GKH + +FV KR T+ V W AG+ED+R Sbjct: 282 AIGVLDALDTEGKHDR-LFV----GKRGPLTTINKV----------WFRIRSEAGLEDYR 326 Query: 313 FHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDD 366 HDLRH++AS L+ +G L +Q+ G ++ RYAHL+ L A D Sbjct: 327 IHDLRHSYASLLVNAGHSLFEVQQALGHSDPKVTMRYAHLSKESLQRAANSASD 380 >UniRef50_Q3JF08 Phage integrase n=2 Tax=Nitrosococcus oceani RepID=Q3JF08_NITOC Length = 251 Score = 103 bits (258), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 68/230 (29%), Positives = 121/230 (52%), Gaps = 18/230 (7%) Query: 148 KHLAMIKAILRAAERDWKWLEKAPVIKIPAVRN--KRVRWLEKEEAKRLIDECPEP---- 201 ++LA + A ++W WLE +P+ +I ++ RVR+L E +RL+ C Sbjct: 33 RYLAALSHTFTIAVKEWGWLEDSPMGRISKLKEPRGRVRFLSDSERERLLKACRGSSNSF 92 Query: 202 LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRD 261 L V AL+TG R+ I+ L W+ +D+QR + ++ ++ RA+ +A + C Sbjct: 93 LYPAVVLALSTGARRMEIMALRWRNVDLQRGLISLHETKNGERRALPLAGHALDC----- 147 Query: 262 QIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWA 321 + + K + T ++ + +D + W A ++AGIEDFR+HDLRH+ A Sbjct: 148 -VKRLSKVRQIDTDLLFPSNHNP-----QQPLDLRKPWEIALKQAGIEDFRWHDLRHSAA 201 Query: 322 SWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKID-DIFGD 370 S+L +G L+ + E+ G ++++MV+RYAH + H ++ IFG+ Sbjct: 202 SYLAMNGATLAEIAEVLGHKTLQMVKRYAHFSETHTARVVASMNAKIFGE 251 >UniRef50_C6MZB6 Putative integrase n=1 Tax=Legionella drancourtii LLAP12 RepID=C6MZB6_9GAMM Length = 386 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 98/386 (25%), Positives = 167/386 (43%), Gaps = 66/386 (17%) Query: 2 SLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEE 61 LF+R ++W+ + G RI+ES GTK ++A++ +R E+ + G P +F+E Sbjct: 8 GLFKRGQVWHIEKQVLG-HRIRESTGTKSLQEAEQYLARRCEEIRQATIYGVRPKRSFKE 66 Query: 62 ACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQ 121 A +R+L E K S+D+D I LK I + ++H + K Sbjct: 67 AAVRFLNENQHKASIDTD------------AILLKSICPFIGDLTLEQVHIGTLQSFIKA 114 Query: 122 KVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDW------KWLEKAPVIKI 175 K +A ++ T++ L +++ IL A +W WL AP IK+ Sbjct: 115 KQEAKLK--------------TKSINNTLELVRHILNVAATEWIDENSLTWLLVAPKIKL 160 Query: 176 PAVRNKRVRW-LEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVA 234 V++ R + L E R ++ P L + +F + TG R+ + L W + ++RV Sbjct: 161 LPVKDARAPFPLSWSEQSRFLEALPVHLNQMARFKVNTGCREQEVCQLRW---EWEKRVP 217 Query: 235 WVNP----------------EESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAK 278 +N + K+ V LND A V+ + G H ++VF + Sbjct: 218 SLNTSVFIIPSHINRDGELRQLVKNGEDRLVILNDEAKAVIEEVRGIHSEFVFSY----- 272 Query: 279 RADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMG 338 P R + T+W +A ++A + D R HDL+HT+ L +GV Q++ Sbjct: 273 ----NGKPITRM----NNTAWRNARKKANLSDLRVHDLKHTFGRRLRAAGVSYEDRQDLL 324 Query: 339 GWESIEMVRRYAHLAPNHLTEHARKI 364 G S + Y+ ++L E A I Sbjct: 325 GHRSGRITTHYSQAELSNLLEAANLI 350 >UniRef50_A3T0W5 Site-specific integrase/recombinase-like n=3 Tax=Rhodobacteraceae RepID=A3T0W5_9RHOB Length = 353 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 95/353 (26%), Positives = 155/353 (43%), Gaps = 54/353 (15%) Query: 18 GGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRWLEEK-ADKKSL 76 GG R + S GT+D A+ + +A R G D T EA ++ +K A + S Sbjct: 18 GGHRFRGSCGTEDFEAAKAVEADIRANAKRNAARGS--DYTLSEALGTYINDKIAGRPSE 75 Query: 77 DSDKSRIEFWLEHFEGI-RLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPV 135 + KS+ L + +G R+ +++A I T+ K + A Sbjct: 76 GTTKSQARVILSYMDGKKRISKLTDADI-----------TQYAAKHRATCA--------- 115 Query: 136 YEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNK----RVRWLEKEEA 191 T +HL M+ LR + +K + P I + A K RVR L +E Sbjct: 116 -------NSTVNRHLQMLGRALRHMGKIYK--TEIPDIDLKAAETKEPRERVRELTTDEQ 166 Query: 192 KRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDM-QRRVAWVNPEESKSNRAIGVA 250 RL P+ +V FAL TG R S I L W+ +DM R +++ K + + Sbjct: 167 TRLFAALPQEFHPIVAFALMTGARISTITGLLWRDVDMPNREISF----RLKGDELMIFP 222 Query: 251 LNDTACKVL----RDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDS--KTSWLSACR 304 +N +L + + + ++VF R DG S ++ + T W A Sbjct: 223 INGELAALLSALPKSNVMESRRYVFT------RVDGHSAERIQIVASGGVFGTVWRKALL 276 Query: 305 RAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHL 357 AG+E+FRFHDLRHT+A+ +++ +S++ ++ G +IE RYAH+ + L Sbjct: 277 DAGVENFRFHDLRHTFATRMLRKTQNISLVSKLLGHTNIETTSRYAHVLTSDL 329 >UniRef50_A5EQT5 Putative prophage integrase n=1 Tax=Bradyrhizobium sp. BTAi1 RepID=A5EQT5_BRASB Length = 386 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 99/378 (26%), Positives = 157/378 (41%), Gaps = 61/378 (16%) Query: 1 MSLFRR--NEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 + L++R + WY ++ G + E+ T + A+E+ KR+ E+ + G T Sbjct: 3 LKLYQRPNSPNWYIRGTV-KGVYVHETCETDVRAVAEEIRAKREWEILQSVVHGIKAGGT 61 Query: 59 FEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEI 118 FE A + +LE + + L ++HF L I + A R++ Sbjct: 62 FEAAAVIYLENGGEARFLQP-------LIDHFGITPLDKIDQTVADDAAKRIY------- 107 Query: 119 WKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAV 178 P P +T + + + I +A + K K P Sbjct: 108 ---------------PGLAP---ATLDRQFYTPLSAVINKAHQHGPKGFCSPVKFKRPKK 149 Query: 179 RNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNP 238 RVRW+ EA +LI+ C L+ +V F TG R + L+W+ +D+QR V Sbjct: 150 PKGRVRWITHAEAHKLIEACAPHLRPLVAFLFYTGARCGEALWLDWRNVDLQR--GEVQF 207 Query: 239 EESKSNRAIGVALNDTACKVL-----------RDQIGKHHKWVFVHTKAAK---RADGTS 284 ++K+ R GV L+ +L R K KW+ + + + + T Sbjct: 208 LDTKNGRDRGVPLHPDIVAILANLPHREGEVFRKPGHKITKWLPSGSNSGELIETVEYTL 267 Query: 285 TPAVRKMRIDS----------KTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVL 334 + D K + +AC RAGI DF HD RHTWA+W + L+ L Sbjct: 268 GEPYAPLDPDDERDVSAGSRIKKGFKAACDRAGITDFHPHDCRHTWATWHYRQNRDLNRL 327 Query: 335 QEMGGWESIEMVRRYAHL 352 +E+GGW S+EMV RYAHL Sbjct: 328 KELGGWSSLEMVLRYAHL 345 >UniRef50_B6ALG3 Integrase n=1 Tax=Leptospirillum sp. Group II '5-way CG' RepID=B6ALG3_9BACT Length = 388 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 101/350 (28%), Positives = 161/350 (46%), Gaps = 56/350 (16%) Query: 19 GKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDL--PDVTFEEACLRWLEEK----AD 72 GKRI++ +G K QA+ ++++ K E +LG L V E L E+ AD Sbjct: 29 GKRIRKKVGPKA--QARAVYERLKTE----SRLGTLVPKPVRKHEPLFGELAEQYIRYAD 82 Query: 73 --KKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKG 130 K D R+++WL+ F G +L + + V N++ Sbjct: 83 LHHKRKGDDTPRLKWWLDAF-GDKLALTLKPYMVEEVMEKMNKEG--------------- 126 Query: 131 KELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKI--PAVRNKRVRWLEK 188 Y+P T A+ L ++KA+ A ++ + +E+ P+ ++ P N VR+L Sbjct: 127 -----YKP-----ATIARCLVVLKAVYNRAVKN-EIIERNPIARVFAPKFDNSLVRYLTT 175 Query: 189 EEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIG 248 ++ +RL + PE L +V AL TG R+ ++ L W+ +D ++ ++KS + Sbjct: 176 DQEERLFEALPERLHPIVTVALHTGCRQGELLKLVWEDVDFNAGTIFL--RDTKSGDSRR 233 Query: 249 VALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPA-VRKMRIDSKTSWLSACRRAG 307 V +N +VL G+ V T D P R +R D + A ++AG Sbjct: 234 VLMNSKVQEVLLALPGRDTPGAPVFT------DTLGGPMEGRNLRRD----FDRAIKKAG 283 Query: 308 IEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHL 357 + FRFHDLRHT+AS L G LQ + G +S M+ RYAHL P HL Sbjct: 284 LAPFRFHDLRHTFASRLAMMGANDRTLQTLLGHKSQRMILRYAHLGPTHL 333 >UniRef50_A2SD71 Putative uncharacterized protein n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SD71_METPP Length = 334 Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 75/303 (24%), Positives = 146/303 (48%), Gaps = 34/303 (11%) Query: 78 SDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYE 137 S R+++W+ G+ L D+++ +++A+ ++ ++ + + GK + + Sbjct: 54 SRTQRLDWWVAKLGGVSLADLTDDHVFTALEQLATQRGRYFAGKDAD-----GKPVMKAK 108 Query: 138 PKPVSTQTKAKHLAMIKAILRAAER----DWKWLEKAPVIKIPAVRNKRVRWLEKEEAKR 193 +P++ T ++ A + A+L A+R W +++ A +N+ VR+L E Sbjct: 109 RRPLAPATLNRYQAALSAVLTWAQRRRIAPKNWQNPCRHVELKAEKNEIVRFLSDAERTA 168 Query: 194 LIDECPEP----LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGV 249 L+ C + L +V L TG R+ + L W +D++R A V+ ++ + + + Sbjct: 169 LLAACRKSSWPRLYLLVMMGLTTGARRGELEALRWADVDLERAEAAVHRSKNGDKKVLPL 228 Query: 250 ALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRI--DSKTSWLSACRRAG 307 + D++ KH A A+ P+ R+ I + +W A + AG Sbjct: 229 ------VPAVVDELAKH----------AGAANALVFPSTRRPDIAYNFDPAWDRALKAAG 272 Query: 308 IEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDI 367 ++ FRFHDLRH+ AS L Q+G L + E+ G + + +RY+HLA +H T + I+ + Sbjct: 273 VKSFRFHDLRHSCASALAQNGATLLEIAEVLGHRQLSVTKRYSHLATDHKT---KLINRV 329 Query: 368 FGD 370 GD Sbjct: 330 LGD 332 >UniRef50_Q7MKK6 Integrase n=6 Tax=Proteobacteria RepID=Q7MKK6_VIBVY Length = 402 Score = 100 bits (249), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 66/223 (29%), Positives = 108/223 (48%), Gaps = 41/223 (18%) Query: 163 DWKWLEKAPV--IKIPAVRNKRVRWLEKEE--------------------------AKRL 194 +W +++ + +KIP + NKR+R+L E A+RL Sbjct: 183 EWGFIDSHSLDNVKIPRIDNKRIRYLSVSEEAALLESLKARDARLKDEALQRYGKRAQRL 242 Query: 195 IDE-CPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALND 253 + + + L+ ++ AL TG+RK I++L+W I+M+ R + E +KS + LN+ Sbjct: 243 VSQRYVDFLEPLIVLALNTGMRKGEILSLKWSHINMEDRYLTIRSENAKSKNKRTIPLNN 302 Query: 254 TACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRF 313 T +L+ ++ V + K D + W S + AGIE+FRF Sbjct: 303 TVYTMLQAWHEQNPDTELVFERNGKPLDSY------------QYQWESLLKEAGIENFRF 350 Query: 314 HDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNH 356 HDLRH +AS L+ L+V++E+ G ++M RYAHLAP H Sbjct: 351 HDLRHHFASKLVMKEADLNVVRELLGHADLKMTLRYAHLAPEH 393 >UniRef50_B1JZG3 Integrase family protein n=1 Tax=Burkholderia cenocepacia MC0-3 RepID=B1JZG3_BURCC Length = 429 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 76/257 (29%), Positives = 122/257 (47%), Gaps = 54/257 (21%) Query: 139 KPVSTQTKAKHLAMIKAIL-RAAERDWKWLEKAPVIKIPAVR--NKRVRWLEKEEAKRL- 194 K +ST T + LA ++ + RA E W + + P+ + A++ + +VRWL +E RL Sbjct: 167 KGLSTATTNRDLAALRGLFSRAVE--WGVVAEHPMRTVKALKESSGKVRWLSDDEEDRLR 224 Query: 195 --ID----------------------ECPEPLKSV---------VKFALATGLRKSNIIN 221 +D E E L++V V +L TG+R+ ++ Sbjct: 225 IALDAREERERSARDSANVWRKARGYELLEDLRTVPFVDYLKPAVLLSLNTGMRQGELLK 284 Query: 222 LEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRD--QIGKHHKWVFVHTKAAKR 279 L W ++D++ + V+ E +KS + + LND A L+ Q VF A Sbjct: 285 LRWGRVDLENSILTVSDETAKSGKQRHIPLNDEALTALKQWRQQQSRFDVVFAGDSGA-- 342 Query: 280 ADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGG 339 +R D KT+W + A I+DFR+HD+RH +AS L+ +GV L+ ++E+ G Sbjct: 343 -----------VRTDVKTAWARLLKDAQIQDFRWHDMRHHFASRLVMAGVDLNTVRELLG 391 Query: 340 WESIEMVRRYAHLAPNH 356 + M RYAHLAP H Sbjct: 392 HSDMTMTLRYAHLAPEH 408 >UniRef50_A6VBP4 Site-specific recombinase, phage integrase family n=2 Tax=Pseudomonas RepID=A6VBP4_PSEA7 Length = 404 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/239 (30%), Positives = 112/239 (46%), Gaps = 51/239 (21%) Query: 155 AILRAAERDWKWLEKAPVIKIPAV---RNKRVRWLEKEEAKRL---IDECPEP------- 201 A+ RA E W +L+ P+ ++ + R RVR+L +E KRL +++ E Sbjct: 170 ALSRAVE--WGFLDDHPMARLKQIKTDRAGRVRYLLPDEEKRLRQAMEDRQESIRTDRDS 227 Query: 202 ------------------------LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVN 237 LK +V +L TG+R+ + NL W ID+ ++ V Sbjct: 228 ANQWRAERKKERLADLREVLFVDHLKPLVLLSLNTGMRRGEVFNLTWADIDLTNKLVTVE 287 Query: 238 PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDS-K 296 E +KS + + LN A + L+ +H R G P R+D+ K Sbjct: 288 GEGAKSGQTRHIPLNKEALETLKGWRKQH-----------PRNTGYVFPGKDGERLDNVK 336 Query: 297 TSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPN 355 SW + A + FR+HDLRHT+AS L+ +GVPL+ ++E+ G I M RYAHLAP+ Sbjct: 337 KSWEGLLKLANVTGFRWHDLRHTFASKLVMAGVPLNTVRELLGHSDITMTLRYAHLAPD 395 >UniRef50_Q72A00 Site-specific recombinase, phage integrase family n=2 Tax=Desulfovibrio vulgaris RepID=Q72A00_DESVH Length = 309 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 87/319 (27%), Positives = 144/319 (45%), Gaps = 57/319 (17%) Query: 63 CLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQK 122 C WL A K S +D+S +L+H E + + +R+ E+ Sbjct: 35 CRDWL---ASKSSYKTDRS---LYLKHIEPV----------------IGSRRMDEVKTVD 72 Query: 123 VQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKIPAVRN 180 + +R+ +L S QT+ + ++K + R + P + + V N Sbjct: 73 INELLRRMGDL--------SPQTRVHAVGLVKRLYRRMAGWGVYHGPTPTDGVVVKRVDN 124 Query: 181 KRVRWLEKEEAKRLIDE--CPEP-LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVN 237 R+R+L +EA+ L++E C P V + +L GLR I +L+ Q +++ RV V Sbjct: 125 ARMRFLSPKEARWLLEELDCRSPQFADVCRVSLFAGLRLREIFSLKVQHVNIDARVIAVM 184 Query: 238 PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAA----KRADGTSTPAVRKMRI 293 +S S A ++ + +VL + FV TKA+ + + T VR + + Sbjct: 185 DAKSGSRMA---SMTEDLARVLARYVVGRRPEEFVFTKASGEGMRTINQTFVRVVRDLEL 241 Query: 294 DSKTSWLSACRRAGIEDFR----FHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRY 349 + G++D R FH LRHT+ASWL+Q GVPL + ++ G +EM RRY Sbjct: 242 ND-----------GVDDARHKVVFHTLRHTFASWLVQRGVPLYTVADLMGHSVVEMTRRY 290 Query: 350 AHLAPNHLTEHARKIDDIF 368 A LAP+ E ++D I Sbjct: 291 AKLAPDTRREAVNQLDGIL 309 >UniRef50_C4XTG1 Site-specific recombinase n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XTG1_DESMR Length = 409 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 72/261 (27%), Positives = 121/261 (46%), Gaps = 44/261 (16%) Query: 133 LPVYEPKPVSTQTKAKHLAMIKAILRAA--------------ERDWKWLEKAPV------ 172 LP++ +P ++ T+ A+L A R + W PV Sbjct: 128 LPLFAHRPATSLTRTDTEQFRDALLDAGGLSPMTIKHHLVVIRRVYNWAASTPVADDPGH 187 Query: 173 -----------IKIPAVRNKRVRWLEKEEAKRLIDECPEPLK---SVVKFALATGLRKSN 218 I++P V N+R+R+L +EEA RL++ E L ++ AL TG+R+ Sbjct: 188 MLFEGRNPVSGIRMPLVDNERIRFLTREEADRLLEAAGERLPEMHDIILLALLTGMRRQE 247 Query: 219 IINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAK 278 I+ L WQ +D+ R+ + +++ R+ L++ +L+ + +H + FV A Sbjct: 248 ILGLMWQDVDLVNRIISIPARLTRAKRSRKAFLDEETAAMLQAR-REHAQSPFVFPGAV- 305 Query: 279 RADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFR----FHDLRHTWASWLIQSGVPLSVL 334 DG P + D+ + + G+ D + FH LRHT+ASWL Q+G + L Sbjct: 306 --DGRRDPDHVTRQFDALVNGIGLNN--GVTDPKHKVVFHTLRHTFASWLAQAGADIHHL 361 Query: 335 QEMGGWESIEMVRRYAHLAPN 355 E+ G +SI ++RYAHL P Sbjct: 362 MELTGHKSISTMQRYAHLMPG 382 >UniRef50_A6G3J3 Site-specific recombinase, phage integrase family protein n=3 Tax=Plesiocystis pacifica SIR-1 RepID=A6G3J3_9DELT Length = 363 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 80/242 (33%), Positives = 115/242 (47%), Gaps = 25/242 (10%) Query: 139 KPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKRVRWLEKEEAKRLID-- 196 K S +T HL +++ +L A R+W ++K P I+ RWL+ EA+RL++ Sbjct: 114 KDYSRKTLNNHLTILRKLLETA-REWGLIDKVPSIRWLKAAKPEFRWLDFAEAERLLEAS 172 Query: 197 ECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRR-------VAWVNPEESKSNRAIGV 249 C + ++ L TGLR+ ++ L WQ + + R VA KS RA V Sbjct: 173 RCEPEWRMMILLGLRTGLRQGELLALRWQDVCFEARRIAVRQAVAEGILGTPKSGRAREV 232 Query: 250 ALND-TACKVLRDQIGKHH---KWVFVHTKAAKRADGTSTPAVRKMRIDSKTSW-LSACR 304 L+ T + +R Q H WVF DG +M W L R Sbjct: 233 PLSPATLAEFVRHQARYRHLRSPWVFCQL------DGDHAG---EMLTKGMCKWPLRRAR 283 Query: 305 -RAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARK 363 RA +E +HDLRH++AS L GVPL +QE+ G +IEM RYAHLAP+ L + Sbjct: 284 DRADLEALGWHDLRHSFASHLAMRGVPLKAIQELLGHSTIEMTMRYAHLAPSTLIDAVAA 343 Query: 364 ID 365 +D Sbjct: 344 LD 345 >UniRef50_A5IH69 Site specific recombinase n=2 Tax=Legionella pneumophila RepID=A5IH69_LEGPC Length = 407 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/171 (33%), Positives = 91/171 (53%), Gaps = 12/171 (7%) Query: 196 DECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTA 255 D + L +V ++ TGLR+ + +L W +++ ++ E +K+ + + LND A Sbjct: 243 DNACDYLMPMVLLSINTGLRRGELFHLTWDMVNLSEGSLILSGEITKNKHSRYIPLNDEA 302 Query: 256 CKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDS-KTSWLSACRRAGIEDFRFH 314 K+L + +H K A+R +G P+ + K SW S ++A I FR+H Sbjct: 303 YKILDN----------LH-KKAERKEGLVFPSKNNQPFNHVKRSWGSLLKKANITQFRWH 351 Query: 315 DLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKID 365 DLRH +AS L+ +GV L+ ++E+ G I M RYAHLAP H RKID Sbjct: 352 DLRHHFASKLVMAGVDLNTVRELLGHSDIAMTLRYAHLAPEHKVNAVRKID 402 >UniRef50_B8J3W5 Putative uncharacterized protein n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8J3W5_DESDA Length = 337 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 83/306 (27%), Positives = 147/306 (48%), Gaps = 45/306 (14%) Query: 91 EGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQ---------AAIRKGKELPVY----E 137 E L + E I V R +N K + I + +Q AAIR K++ + Sbjct: 57 ENTTLNEALERFIAEYVPRYNNPKLETIKARALQRRKIATKFMAAIR-SKDIADFMQERA 115 Query: 138 PKPVSTQTKAKHLAMIKAILRAAERDWKWLE-KAPVIKIPA--VRNKRVRWLEKEEAKRL 194 + V+ T LA+I + A W + PV +IP V + R R LE +E +RL Sbjct: 116 AEGVAGNTIRLDLALISRVFNVAISSWGMESLRNPVSRIPKPKVSSGRTRRLEGDEEERL 175 Query: 195 IDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDT 254 + C + L+ +V+FA+ T +R+ + +L WQ ID+++ A++ ++K+N V L+ Sbjct: 176 LAACSDSLRPIVRFAIETAMRRGEMASLTWQNIDLEKSTAYL--PKTKNNEERTVPLSPA 233 Query: 255 ACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFH 314 A ++L++ VF + +D + T A ++ C++ GIE FH Sbjct: 234 AVQILKNLEKGESARVF------QLSDVSITQA-----------FIKTCQKVGIEGLTFH 276 Query: 315 DLRHTWASWLIQ-SGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEH---ARKIDDIFGD 370 DLRH S L + + + + ++ + G ++++M+ RY+HL L + AR+ G+ Sbjct: 277 DLRHEATSRLFERTDLDIMEIKSITGHKTLQMLARYSHLRTYKLVDRLAGARR-----GE 331 Query: 371 NVPNMS 376 PN+S Sbjct: 332 TPPNLS 337 >UniRef50_A1AUY6 Phage integrase family protein n=2 Tax=Desulfuromonadales RepID=A1AUY6_PELPD Length = 402 Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 91/348 (26%), Positives = 159/348 (45%), Gaps = 50/348 (14%) Query: 51 LGDLPDVTFEEACLRWLEEKA----------DKKSLDSDKSRIEFWLEHFEGIRLKDISE 100 LG+ P V+ ++A R E KA ++ + +D + EF +H+ + Sbjct: 71 LGEFPAVSVQDARSRVAEHKALLARDKDPAAERGKVRADLTFEEFSTQHY-------LPH 123 Query: 101 AKIYSAV-----SRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHL-AMIK 154 AK + +++ R + K ++QA + + + K +T A HL A +K Sbjct: 124 AKAHKQTWDDDKNQIERRLNPILGKLRLQAITPRDVAMVHSKEKERTTACTANHLLATLK 183 Query: 155 AILRAAERDWKWLEKAPVIKIPAVRNK--RVRWLEKEEAKRLID--ECPEPLKSV--VKF 208 +L A + W LEK P + R R+L KEE + + E + L SV ++ Sbjct: 184 RMLNLAVK-WGLLEKNPAGGQEKFKEGPLRERYLSKEELPKFLKALEDQDDLLSVAALRM 242 Query: 209 ALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHK 268 L TG R+ I++L W+ + + ++ ++K+ R+ V LN A +V++D + + Sbjct: 243 LLYTGCRREEIMSLRWENVRLDEERIFL--PKTKNGRSRTVHLNARAKEVIQDLQARKDQ 300 Query: 269 --------WVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTW 320 +VF + K+ D + + AC AGI++FR HDLRHT+ Sbjct: 301 EDRTRGSEYVFPSRQGTKKG----------YIYDLRKPFEKACLNAGIDNFRIHDLRHTF 350 Query: 321 ASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIF 368 AS + SG L +Q + G + I M +RYAHL + L + + ++F Sbjct: 351 ASMAVSSGADLYAVQRLLGHQDIAMTQRYAHLNADDLKKATEGVSEMF 398 >UniRef50_B2KEQ8 Integrase family protein n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KEQ8_ELUMP Length = 337 Score = 94.7 bits (234), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 63/244 (25%), Positives = 115/244 (47%), Gaps = 26/244 (10%) Query: 141 VSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNK--RVRWLEKEEAKRLIDEC 198 S T +H ++ +AI+ A + + P I + R+ R ++ KE+ K L+ Sbjct: 116 TSPSTANRHFSLFRAIINKALNLKLYKGQNPCIGVVRQRDNPPRDKYFTKEDIKSLLVTA 175 Query: 199 PEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKV 258 LK ++ FA+ TG RK I+NL W+ +D + + +S R I +A ND + Sbjct: 176 ENRLKPIIAFAVLTGCRKMEILNLRWKDVDFYGGIIRITMSKSGKPREIPLA-NDLRPIL 234 Query: 259 LRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRH 318 L +HT + + PA+ K S+ ++ G E + FH RH Sbjct: 235 LA-----------MHTNPQDKVFNITVPAL-------KYSFNKLLKKLGFEGYCFHTCRH 276 Query: 319 TWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIFGDNVPNMSHS 378 T+AS +Q+ ++ LQ + G +IE+ RY+H +P ++ + + +D I +S + Sbjct: 277 TFASLYMQNDGNITDLQRILGHATIELTMRYSHFSPQYIQQTIKVMDGIIA-----LSEN 331 Query: 379 EIME 382 +++E Sbjct: 332 KLLE 335 >UniRef50_C6HW36 Putative phage integrase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HW36_9BACT Length = 367 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 114/230 (49%), Gaps = 19/230 (8%) Query: 141 VSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIK---IPAVRNKRVRWLEKEEAKRLIDE 197 +S QT ++A L A RD K ++ +P+ +P R R+R+L + E RL + Sbjct: 126 LSPQTINHFFGHLRAALNEALRDGK-IDHSPMQGFSLLPTPRG-RLRFLTEGEELRLREV 183 Query: 198 CPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACK 257 +V+FA+ TGLR+ +L W ID+Q RV + SK V L+D A + Sbjct: 184 MTPADFRLVRFAILTGLRREEQFSLTWSDIDLQNRVLTI--PRSKHGGTRHVPLSDEAVE 241 Query: 258 VL---RDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFH 314 +L R + W F A D P R+ +L A +AGI+D +H Sbjct: 242 ILKAIRTERRVVSAWCFPSQNPATHID----PQNFYRRV-----YLPALEKAGIKDVIWH 292 Query: 315 DLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKI 364 LRHT AS L+ +GV + +QE+ G +++ M RY+HL+ HLT+ +I Sbjct: 293 TLRHTCASRLVMAGVDIRTVQEILGHKTLAMTTRYSHLSGAHLTQAVNRI 342 >UniRef50_A6FVR7 Phage integrase n=3 Tax=Roseobacter sp. AzwK-3b RepID=A6FVR7_9RHOB Length = 390 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 96/349 (27%), Positives = 165/349 (47%), Gaps = 40/349 (11%) Query: 47 RVEKLGDLPDVTFEEA---CLRWLEE-----KADK-----KSLDSDKSRIEFWLEHFEGI 93 RV KLG P+++ E+A CL+ E AD+ KS+ D+ + +L ++ Sbjct: 54 RVIKLGCFPELSAEDARQLCLKHKREISVGASADELAKSTKSITLDQFYEDHYLPWYKTY 113 Query: 94 RLKDISEAKIYSAVS--RMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLA 151 R + ++Y + R +R+ I + ++ + K+L Y P V+T + Sbjct: 114 RRASANIVQMYRSNFHLRFGHRQLHSISQTDLKQLTNEMKQLG-YAPGSVNTT-----VV 167 Query: 152 MIKAILRAAERDWKW------LEKAPVIKIPAVRNKRVRWLEKEEAKRLI----DECPEP 201 +++ +LR A+ DW L K P + +P + + R+L ++EA++L P Sbjct: 168 VLRGMLRRAD-DWGLCRIHHSLHKPPNL-LPDTK-RHERFLSRDEAQKLQVVLRKRGATP 224 Query: 202 LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRD 261 + + F L TG RKS ++N EW+ I+M R W P SK+ + V L+ A +L+ Sbjct: 225 VNLAILFLLYTGARKSEVLNAEWRSINMDR-CEWRIPL-SKNGQPRTVILSQKAVAILQS 282 Query: 262 QIGKHHKWVFVHTKAAKRADGT-STPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTW 320 + + K AK+ + P + +W A + D R HDLRH++ Sbjct: 283 ARSYQQRH---YGKQAKQVSAVFANPQTLLPYHNIWETWKRVRIEADLPDLRLHDLRHSY 339 Query: 321 ASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIFG 369 AS LI +GV + +Q++ G I +RYAHLA L E + +D+ +G Sbjct: 340 ASTLINAGVSIYEVQKLLGHSHIATTQRYAHLASERLHETVKLLDEQYG 388 >UniRef50_C0N6F6 Site-specific recombinase, phage integrase family protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N6F6_9GAMM Length = 409 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 71/255 (27%), Positives = 118/255 (46%), Gaps = 51/255 (20%) Query: 141 VSTQTKAKHLAMIKAIL-RAAERDWKWLEKAPVIKIPAVRNKR---VRWLEKEEAKRL-- 194 +S T +++ +KA+ RA E W+ +E+ P+ K+ ++ +R+L +E +RL Sbjct: 162 LSASTSNRYIGTLKAMFNRAVE--WEVIEQNPITKVKKQKSDNRAIIRYLSPDEEERLRA 219 Query: 195 ---------------------------IDECPEPLKSVVKFALATGLRKSNIINLEWQQI 227 + + + +V + TG+R+ + NL WQ + Sbjct: 220 SLRSRDRRLTQSNPFYADGRFTRLETILGGFQDHVHPMVLLLMNTGMRRGEMFNLRWQDV 279 Query: 228 DMQRRVAWVNPEESKSNRAIGVALNDTACKVLR---DQIGKHHKWVFVHTKAAKRADGTS 284 D+ + + SK+ + + LN A VL+ Q ++ VFV K KR Sbjct: 280 DLNNKRITIVGNTSKTGQTRYIPLNVEAFNVLQMWSKQTKRNAGHVFV-GKNGKRFTN-- 336 Query: 285 TPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIE 344 ID +W R A I DFR HDLRH +AS L+ +G+ L+ ++E+ G I+ Sbjct: 337 --------IDK--AWKVLLRDAKIHDFRLHDLRHHFASRLVSAGIDLNSVRELLGHSDIK 386 Query: 345 MVRRYAHLAPNHLTE 359 M RYAHLAP HL++ Sbjct: 387 MTLRYAHLAPAHLSD 401 >UniRef50_A1AYV5 Phage integrase family protein n=2 Tax=Rhodobacteraceae RepID=A1AYV5_PARDP Length = 356 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 104/370 (28%), Positives = 150/370 (40%), Gaps = 64/370 (17%) Query: 1 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFE 60 + L +R EIWY ++ G+R+ ES DKRQA+ L +R+AE+ G TF Sbjct: 3 LKLIKRGEIWYIRGTV-AGQRVYESTRIGDKRQAEILRARREAEIIERRAYGKAVTYTFA 61 Query: 61 EACLRWLEEKADKKSLDSDKSRIEFWLEHFEGI-RLKDISEAKIYSAVSRMHNRKTKEIW 119 EA L ++E + K L +RI ++HF RL D + A + ++ Sbjct: 62 EAALAYMESGGEGKYL----ARI---IKHFGPRWRLVDTDNDAVSRAAAALY-------- 106 Query: 120 KQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVI-KIPAV 178 P P ++ Q + I A+ R A D K ++ K P Sbjct: 107 --------------PDAGPATINRQL----ITPISAVYRLAAEDGKVPDRRFRRRKEP-- 146 Query: 179 RNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNP 238 R+RWL EE + L+ C L +V F L TG R + L Q + + A+V Sbjct: 147 -RTRLRWLTPEEVEALLAACDRRLLPIVAFLLGTGCRTGEALGLTVQHLHLDTCEAYVGV 205 Query: 239 EESKSN---------RAIGVALN-DTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAV 288 ++ R I VA A V R GK ++ + + R G A Sbjct: 206 TKNGDGKMVQYPGRTRRIMVASGLPEAGAVFRTPKGKPYR---LTNSSGSRLGGQIKGAF 262 Query: 289 RKMRIDSKTSWLSACRRAGI-EDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVR 347 K R D+ AG+ ED H LRHT+A+W L +L E GGW +M Sbjct: 263 DKAR-DA----------AGLGEDVTPHTLRHTFATWHYAVNRDLILLMERGGWRKPDMAI 311 Query: 348 RYAHLAPNHL 357 Y LAP L Sbjct: 312 GYTKLAPADL 321 >UniRef50_Q0VMT6 Rci protein n=22 Tax=Proteobacteria RepID=Q0VMT6_ALCBS Length = 367 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 75/240 (31%), Positives = 113/240 (47%), Gaps = 19/240 (7%) Query: 137 EPKPVSTQTKAKHLAMIKAILRAAERDWK-WLEKAPV--IKIPAVRNKRVRWLEKEEAKR 193 +P+P S T LA++ + A R+W L PV I+ PA R R L + E R Sbjct: 129 DPRPRSPNTVRLDLALLGHMFTTAIREWGIGLPSNPVQNIRRPAPPPGRERRLNQTEEDR 188 Query: 194 LI---DECPEPLKS-VVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGV 249 LI D P+ +V+ AL TG+R + I L QID++RRV V E+K+ V Sbjct: 189 LIAAVDSHSNPMLGWIVRLALETGMRSAEITTLRRNQIDLKRRV--VRLLETKNTAPRTV 246 Query: 250 ALNDTACKVLRDQIGKHHKWV---FVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRA 306 L+ TA +L++ + + + V R DG P + WL A A Sbjct: 247 PLSSTATAILQEALANPVRPIDTDLVFFGEPGR-DGQRRP------YNFNKPWLKAKETA 299 Query: 307 GIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDD 366 G+++ FHDLRH S L++ G+ + + G +S++M++RY HL L I D Sbjct: 300 GMKELHFHDLRHEAVSRLVEGGLSDQQVAAISGHKSMQMLKRYTHLRAEDLVNELDSIAD 359 >UniRef50_A6FWH8 Site-specific recombinase XerD-like protein n=1 Tax=Roseobacter sp. AzwK-3b RepID=A6FWH8_9RHOB Length = 316 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 73/246 (29%), Positives = 114/246 (46%), Gaps = 34/246 (13%) Query: 145 TKAKHLAMIKAILRAAERDWKWL-----EKAPVIKIPAVRNKRVRWLEKEEAKRLIDEC- 198 T KH+ ++ +L A R W + ++ P+ ++ V + + R+L +E +RLI C Sbjct: 87 TINKHIYLMNRMLNLA-RHWCLVPAQNPDQQPLKRL-VVGDYKQRFLSADEIQRLIAACR 144 Query: 199 --PEP-LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTA 255 P L V+ L TG RK W+ +D+ +R+ W P SK+ R+ + LN A Sbjct: 145 RSSHPYLHHFVQILLLTGARKGEARTALWRDVDLDKRI-WTVPR-SKNGRSRRILLNTNA 202 Query: 256 CKVLR---------DQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRA 306 Q +VF + + + D +W A +A Sbjct: 203 VDSFNAIRRTAERLQQPTLPTSFVFTNPRTGRAYDSF------------YAAWYVARDQA 250 Query: 307 GIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDD 366 +ED R HDLRHT+AS LI GV L +Q + G S++M +RYAHLAP+ L A + Sbjct: 251 KLEDVRIHDLRHTFASLLINKGVSLYEVQTLLGHSSVQMTQRYAHLAPDRLHSRAEIVSG 310 Query: 367 IFGDNV 372 I G ++ Sbjct: 311 IVGKSI 316 >UniRef50_B3E8B2 Integrase family protein n=1 Tax=Geobacter lovleyi SZ RepID=B3E8B2_GEOLS Length = 421 Score = 90.9 bits (224), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 70/250 (28%), Positives = 113/250 (45%), Gaps = 51/250 (20%) Query: 145 TKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNK---RVRWLEKEEAKRLIDEC--- 198 T + L IKA L A +W+ LE P+ K+ ++ +VR+L +E KRL+ Sbjct: 173 TCNRDLTAIKAFLSKAV-EWEHLEHHPLAKVKPLKVDSVAKVRFLSADEEKRLLKALDDR 231 Query: 199 -------------------------------PEPLKSVVKFALATGLRKSNIINLEWQQI 227 + LK ++ +L TG+R + +L W + Sbjct: 232 EEVARAERATANLWRKERGYPLYTDLNSVSFADHLKPMILVSLNTGIRWGELASLAWDSV 291 Query: 228 DMQRRVAWVNPEESKSNRAIGVALNDTACKVLRD-QIGKHHKWVFVHTKAAKRADGTSTP 286 DM++ + V +++KS + V LN A L+D + VF K D + Sbjct: 292 DMKKALVTVIGDKAKSGKTRHVPLNSIALNALKDWKKQSSGDVVFPGRDGKKTLDNVNK- 350 Query: 287 AVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMV 346 SW + A I++FR+HD+RH +ASWL+ +GV L+ ++E+ G ++M Sbjct: 351 -----------SWKAVLDAAQIKNFRWHDMRHHFASWLVMAGVDLNTVRELLGHSDLKMT 399 Query: 347 RRYAHLAPNH 356 RYAHLAP H Sbjct: 400 LRYAHLAPEH 409 >UniRef50_Q1D2W1 Site-specific recombinase, phage integrase family n=7 Tax=Myxococcales RepID=Q1D2W1_MYXXD Length = 334 Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 83/291 (28%), Positives = 134/291 (46%), Gaps = 20/291 (6%) Query: 75 SLDSDKSRI-EFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKEL 133 S+DS + + + L F + L +I A+I + M +K+ K+K A+ R ++ Sbjct: 23 SVDSKRQILRDHILPFFGKVALANIGLAEIEDFKAHMRKKKSAA-HKRKDSASKRAIRKR 81 Query: 134 PVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIK-IPAVRNKRVRWLEKEEAK 192 EPKP+S +T L ++ +L AE + + +AP +K + +L EEA Sbjct: 82 QRSEPKPLSLKTINNVLTVLHKLLTLAE-EHGVIRQAPRVKPFGKLPKPPFDFLSFEEAD 140 Query: 193 RLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQR------RVAWVNPEE-SKSNR 245 +L+ +++++ A+ TGLR+ +I L W + + R R W E K R Sbjct: 141 QLLAVAEPEWRTLLRVAIKTGLRQGELIGLRWHDLTLTRGLLHVRRTIWRGIEGLPKGGR 200 Query: 246 AIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADG-TSTPAVRKMRIDSKTSWLSACR 304 V L + L + ++VF G + P R +R T R Sbjct: 201 ERTVDLPASVVDALNAHRHRRGRFVFCQEDGQPLTKGKMAAPLGRALRAAGIT------R 254 Query: 305 RAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPN 355 G +HDLRHT+ S L G+PL V+QE+ G +IEM RYAHL+P+ Sbjct: 255 EVG--QIGWHDLRHTYGSHLAMRGIPLKVIQELIGHATIEMTNRYAHLSPD 303 >UniRef50_A8V435 Phage integrase family protein n=2 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V435_9AQUI Length = 324 Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 104/373 (27%), Positives = 166/373 (44%), Gaps = 60/373 (16%) Query: 1 MSLFRR-NEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWR--VEKLGDLPDV 57 M LF+R N I+Y + G KR SL TKDK AQ L ++ K E + + L + + Sbjct: 1 MRLFKRENGIYYVEFE-RGKKR---SLKTKDKALAQRLFNQLKREYLKGKIILLSEGKKI 56 Query: 58 TFEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKE 117 E +LE + +S D + + L+ +LKD + A+++ H Sbjct: 57 KLSEFIEEYLEWCRENRS-DETFKKARYVLQ-----KLKDHTGDIYIKALTKKH------ 104 Query: 118 IWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKI 175 + V + +G +S T H+ IK+ L A +W++++ P+ K Sbjct: 105 -LDEYVSTLLAQG----------ISRTTINIHIRTIKSALTKAV-EWEYVQNHPLEGYKQ 152 Query: 176 PAVRNKRVRWLEKEE---AKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRR 232 V R+L E+ +++ID+ E V + + TG+R I L W+ ID+ R Sbjct: 153 LKVHQTPPRFLLPEDIAKVEKVIDD--EFWLFVFRLFVYTGMRLGEIHKLRWKHIDLNRN 210 Query: 233 VAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMR 292 V V ++ +R I + H + +A A G P K Sbjct: 211 VIKVEKTKTFQSRVIPI-----------------HPKLRAELEARTPAMGKVVPYA-KPT 252 Query: 293 IDSKTSWLSAC-RRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAH 351 I+ K L C ++AG +D R HDLRHT+AS ++ +GV L +QE+ G +S YAH Sbjct: 253 IEHK---LKNCFKKAGFKDLRIHDLRHTFASLMVMAGVDLKTVQELLGHQSYRTTEIYAH 309 Query: 352 LAPNHLTEHARKI 364 L+P HL E +K Sbjct: 310 LSPQHLHEAIKKF 322 >UniRef50_A0LHA2 Phage integrase family protein n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LHA2_SYNFM Length = 329 Score = 90.5 bits (223), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 78/302 (25%), Positives = 134/302 (44%), Gaps = 47/302 (15%) Query: 57 VTFEEACLRWLEEK--ADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRK 114 V F+E +L + +KSL+ + E FEG+R+ DI+ A + Sbjct: 20 VKFDELAEDFLTDYRINQRKSLERAEISTRHLKEKFEGMRIADITTATV----------- 68 Query: 115 TKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILR-AAERDWKWLEKAPVI 173 K ++ + G + T + LA +K +L+ A+ +++ P I Sbjct: 69 -----KTYIEERMGSG----------AAHATINRELAALKRMLKLGAQSTPPKVDRVPHI 113 Query: 174 KIPAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRV 233 + RN R + E+ + L D P LK VV F TG RKS I+ L+W Q+D+ + Sbjct: 114 PMLKERNAREGFFERADFLALRDALPSYLKGVVTFGFKTGWRKSEILCLQWAQVDLDNGI 173 Query: 234 AWVNPEESKSNRAIGVALNDTACKVL------RDQIGKHHKWVFVHTKAAKRADGTSTPA 287 ++P ++K++ V L++ +V R + GK +VF + R Sbjct: 174 VRLDPGDTKNDNPRMVYLDEELKEVFQTQWIARKETGKLSAYVFPNEAGMDR-------- 225 Query: 288 VRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVR 347 +R D + SW +AC AGI FHDLR T +++SG+ + ++ G ++ + Sbjct: 226 IR----DFRKSWDTACTEAGISGKLFHDLRRTAVRNMVRSGISERIAMKISGHKTRSVFD 281 Query: 348 RY 349 RY Sbjct: 282 RY 283 >UniRef50_C6NUL0 Integrase n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NUL0_9GAMM Length = 357 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 76/288 (26%), Positives = 129/288 (44%), Gaps = 59/288 (20%) Query: 94 RLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMI 153 RLK + +A AV+R+ + ++++ R GK PVS QT + ++ Sbjct: 90 RLKTLDDAFGRVAVARLTSSAIASFRDKRLRDEGRGGK--------PVSGQTVKHEIGLL 141 Query: 154 KAILRAAERDWKW-------LEKAPVIKIPAVRNKRVRWLEKEEAKRLIDECPEP----L 202 +L+ AER+W EK K+P R++R L+ E +RL+ C L Sbjct: 142 HRVLKKAEREWGIALPMGLPTEKVQAPKLPQGRDRR---LQGNEEERLLAACARARNPWL 198 Query: 203 KSVVKFALATGLRKSNII------------------NLEWQQIDMQRRVAWVNPEESKSN 244 + +FA+ T +R ++ L W+ +D+++R A + ++ + Sbjct: 199 LPLTRFAIETAMRAGEMLETKGTADPETGERPIQTTGLLWKHVDLKKRTATLPMTKNGTA 258 Query: 245 RAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACR 304 R V L+ A ++LR VF GT+ A+ S+ AC+ Sbjct: 259 RV--VPLSSVAVEILRGLPRSMDGRVF----------GTTYEAI-------HLSFTRACK 299 Query: 305 RAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHL 352 RAGIED RFHDLRH S L + + + + G ++++M++RY HL Sbjct: 300 RAGIEDLRFHDLRHEATSRLFERDLNPMQVAAITGHKTLQMLKRYTHL 347 >UniRef50_B9BNB9 Phage integrase family protein n=2 Tax=Burkholderia multivorans RepID=B9BNB9_9BURK Length = 387 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 64/215 (29%), Positives = 109/215 (50%), Gaps = 31/215 (14%) Query: 179 RNKRVRWLEKEEAKRLIDECPEP-LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVN 237 RN+R++ E+ + D+ P L+ +V+ AL T LR+S ++ L+W + M R A++ Sbjct: 177 RNRRMKSGEEPALLSVCDDARAPYLRPIVELALETALRQSELVQLDWSNVSMSGRYAYL- 235 Query: 238 PEESKSNRAIGVALNDTACKVLRD------QIGKHHKWVFVHTKAAKRADGTSTPAVRKM 291 +KS A G+ L+ A ++L D G VFV G ++ AV++ Sbjct: 236 -PMTKSGTARGIPLSSRAVEILADLPAALDSDGNRAGPVFV---------GATSEAVKR- 284 Query: 292 RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAH 351 +++ A RRAG+ +FRFHDLRH S + G+ + + + G ++ M+ RY H Sbjct: 285 ------AFIRASRRAGLANFRFHDLRHEATSRFFERGLTVPEVARITGHKTWTMLERYTH 338 Query: 352 LAPNHLTEHARKIDDIFGDNVPNMSHSEIMEDIKK 386 L L + AR++D G P+M+ I + +K Sbjct: 339 L---QLADVARRLD---GPKNPDMNAPMIEQLARK 367 >UniRef50_C9M987 Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M987_9BACT Length = 391 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 89/162 (54%), Gaps = 19/162 (11%) Query: 202 LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVL-- 259 L+ ++ +L TG+R+ ++ LEW+ ID + V E K+ ++ + L+ A + L Sbjct: 237 LEPLITLSLKTGIRRGAMLRLEWRDIDFAAKTILVRGEICKTGKSRRIPLSPIAFETLKA 296 Query: 260 -RDQIGKHHKWVF--VHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDL 316 R+Q + +K+VF +T K+ K +W + RA I +F +HDL Sbjct: 297 WREQQPQENKYVFPSAYTNQPKK--------------HCKCAWKNLLIRANITNFHWHDL 342 Query: 317 RHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLT 358 RH +AS L+ +GV L+ ++E+ G ++EM RYAHLAP+ L+ Sbjct: 343 RHDFASKLVMAGVDLNTVRELLGHSTLEMTLRYAHLAPSKLS 384 >UniRef50_B7GVF6 Tyrosine recombinase xerC n=1 Tax=Acinetobacter baumannii AB307-0294 RepID=B7GVF6_ACIB3 Length = 398 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 26/205 (12%) Query: 166 WLEKAPVIKIPAVR--NKRVRWLEKEEAKRLIDECPEP---------LKSVVKFALATGL 214 ++ PV K+ + N+ R+L +E KRL+D P + ++VKF L TG+ Sbjct: 186 LIQVNPVSKVSKFKENNQIERYLNAQEIKRLMDVLNAPHQHGIDNLIIVAIVKFLLLTGV 245 Query: 215 RKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHT 274 RK ++++W +D+ V W+ E+KS +A + LN A +L + + H ++F Sbjct: 246 RKREAMDMKWTDVDLTTGV-WL-LGENKSGKARRITLNQDALAILHS-LPQQHAFIF--- 299 Query: 275 KAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVL 334 + P + D + ++ S + A I + R HDLRH +AS + SG L V+ Sbjct: 300 ---------ANPMTGQPFNDMRKTFQSIMKAASIRNIRIHDLRHNFASIAVNSGQSLYVV 350 Query: 335 QEMGGWESIEMVRRYAHLAPNHLTE 359 Q + G S + +RYAHL + L + Sbjct: 351 QHLLGHASPQTTQRYAHLQSSTLKQ 375 >UniRef50_Q2IFG9 Phage integrase n=2 Tax=Cystobacterineae RepID=Q2IFG9_ANADE Length = 275 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 70/218 (32%), Positives = 110/218 (50%), Gaps = 23/218 (10%) Query: 149 HLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKRV---RWLEKEEAKRLIDECPEPLKSV 205 HLA ++ +L A +W+ + +AP +K + + + ++L +EA+RL+ ++ Sbjct: 43 HLAALRKLLNLAV-EWEVIPRAPKVKGFRAKTEYITEEQFLTFDEAERLVHAAAPEWRTF 101 Query: 206 VKFALATGLRKSNIINLEWQQIDMQ------RRVAWVNPE-ESKSNRAIGVALNDTACKV 258 + AL TGLR ++ L+W+ +D+ RR W E K R V L+D A V Sbjct: 102 IITALKTGLRVGELLALKWEDLDLVAGQLVVRRTLWHKQEGPPKGGRNRKVPLSDEAIAV 161 Query: 259 LRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGI-EDFRFHDLR 317 L+ +H K +V +A R R K S CRRA + + H LR Sbjct: 162 LKAH--RHLKGTYVFCEADGR---------RLTHSRVKDVVPSTCRRAQLAKRLTTHGLR 210 Query: 318 HTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPN 355 HT+AS L+ GV L ++E+ G ESIEM RY+HL+P+ Sbjct: 211 HTFASHLVMRGVSLMAVKELLGHESIEMPLRYSHLSPD 248 >UniRef50_Q1MA85 Putative shufflon-specific DNA recombinase n=3 Tax=Alphaproteobacteria RepID=Q1MA85_RHIL3 Length = 317 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 61/228 (26%), Positives = 106/228 (46%), Gaps = 29/228 (12%) Query: 141 VSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKI---PAVRNKRVRWLEKEEAKRLIDE 197 V+ T + +A++ ++ A RDW + V+K+ P +RN+R R LE +E +RL+D Sbjct: 99 VAPSTAVREMAILSHVIEVAMRDWGFPLSRNVVKLVRRPVIRNERKRRLEGDEEQRLLDG 158 Query: 198 CPEP----LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALND 253 C +++++ A+ TG+R+S I+ L+W I RRV + E +K+ V + Sbjct: 159 CDGGKIPFMRTLLIVAIETGMRRSEILGLKWTDISHNRRV--ITLEMTKNGSGREVPMTQ 216 Query: 254 TACKVL---RDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIED 310 A L ++ VF + + W +RA I Sbjct: 217 RAFDALSRWKENAPVEESMVFPIAPGS-----------------FEQVWRRLLKRANIVG 259 Query: 311 FRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLT 358 RFHDLRH S L + G+ + + + G + + M++RY HL+ + L Sbjct: 260 LRFHDLRHEGVSRLFERGLNVIEVSSISGHKELRMLKRYTHLSADDLV 307 >UniRef50_A8ZUN3 Integrase family protein n=2 Tax=Desulfobacteraceae RepID=A8ZUN3_DESOH Length = 397 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 69/255 (27%), Positives = 118/255 (46%), Gaps = 26/255 (10%) Query: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAP--VIKIPAV 178 +++ + +RKG KP + T + ++ + A R K+ P +I P + Sbjct: 147 ERLLSGLRKGTS---KRGKPYAAATIKHQIVLLTRMFNVAARWGKYTGPNPCKLIAKPRL 203 Query: 179 RNKRVRWLEKEEAKRLID---ECPEPLKS-VVKFALATGLRKSNIINLEWQQIDMQRRVA 234 N++ +L +E RL+D + P+ + + + F L TGLR+ + L WQ ++M R+ Sbjct: 204 NNQKTGFLTDDELTRLLDVLEQWPDRMSAGFIAFLLHTGLRRGELFRLTWQDVNMDRQTL 263 Query: 235 WVNPEESKSNRAIGVALNDTACKVLRDQIGKHHK-WVFVHTKAAKRADGTSTPAVRKMRI 293 V + K R + L++ A L +H +VF A+RAD Sbjct: 264 TV--RDPKGGRDTVLPLSEKAIDALNSLPREHETPFVFYGRNGAQRAD------------ 309 Query: 294 DSKTSWLSACRRAGI-EDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHL 352 + W + A + E FR HDLRH +AS L+ +G L +Q + +S M +RYAHL Sbjct: 310 -FRHPWYRIKQAAALPEGFRLHDLRHHFASALVSAGTNLYTVQALLTHKSAAMTQRYAHL 368 Query: 353 APNHLTEHARKIDDI 367 + L + + DD+ Sbjct: 369 SDQALRDAVKLSDDL 383 >UniRef50_C6NU13 Site-specific recombinase, phage integrase family n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NU13_9GAMM Length = 390 Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 66/250 (26%), Positives = 111/250 (44%), Gaps = 32/250 (12%) Query: 150 LAMIKAILRAAERDWKWLE---KAPVIKIPAVRNKRVRWLEKEEAKRLIDEC----PEPL 202 LA++ + A ++W +++ +++ P + R R E RL++ C PE L Sbjct: 132 LAVLSHLYTIARKEWGYVDLINPVELVRKPRLPEGRDRRFVGNEEDRLLEACARKNPE-L 190 Query: 203 KSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQ 262 +V AL T +R+ + L W +I + PE +K+ + V L++ A L+ Q Sbjct: 191 ADLVIVALETAMRQGEVFTLTWDRISFTDHTIKLPPELTKTRKGRTVPLSERAEDALKRQ 250 Query: 263 IGKHHK-----WVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLR 317 +H+ W + DG + S+ A + AG+EDF FHDLR Sbjct: 251 RARHNGHGNRVWSYATQ------DGV------------RASFFKAVKVAGLEDFHFHDLR 292 Query: 318 HTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIFG-DNVPNMS 376 H S + G+ +V+Q + G ++ +M+ RY HL+ L E R D G P S Sbjct: 293 HEATSRFFERGLNAAVVQGITGHKTAQMLARYTHLSGKSLVEAVRGADPAIGVSTTPKPS 352 Query: 377 HSEIMEDIKK 386 S I++ Sbjct: 353 PSPSGVQIQR 362 >UniRef50_D1RC05 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1RC05_9CHLA Length = 369 Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 60/227 (26%), Positives = 109/227 (48%), Gaps = 26/227 (11%) Query: 142 STQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNK--RVRWLEKEEAKRLIDECP 199 S T ++LA + + + W+ P ++ R R + + E RL +EC Sbjct: 134 SHATVNRYLATLSTVFTYGINECGWITDNPCRRVSKFTESKGRDRIVAENEFTRLFEECK 193 Query: 200 ----EPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTA 255 E L VV A+ TG+R+ I+ L W I++ R+ + +E+K+ + V++ A Sbjct: 194 NSRNEHLLPVVVLAVTTGMRRGEILGLTWDCINLDRQTIIL--KETKNGKQRTVSIVGEA 251 Query: 256 CKVLRDQIGKHHK---WVFVHTKAAKRADGTSTPAVRKM-RIDSKTSWLSACRRAGIEDF 311 ++LR K + +VF PA ++ +I + +W A +RAGI++ Sbjct: 252 LELLRSHYQKRNPNTPYVF--------------PAKKRFGKICIRKAWDEALKRAGIQNL 297 Query: 312 RFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLT 358 R HDLRHT+ ++ ++G + L G ++++MV RY H+ +T Sbjct: 298 RIHDLRHTFCTYASETGASILELAAAMGHQTLQMVNRYTHMNQKKIT 344 >UniRef50_B6AM10 Integrase n=16 Tax=Leptospirillum sp. Group II RepID=B6AM10_9BACT Length = 185 Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 52/194 (26%), Positives = 101/194 (52%), Gaps = 19/194 (9%) Query: 169 KAPV--IKIPAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQ 226 K PV I++P+ + R R L+ E +++++ E + V++FAL T +R+ + + W Sbjct: 5 KNPVKSIRLPSPPSGRDRRLQPGELEKILESVSEEMGQVIRFALETAMRRGELAGMTWDM 64 Query: 227 IDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTP 286 +D+++R + ++K+ + V L+ A +L+D++ + +R DG Sbjct: 65 VDLKKRTVTLPETKTKNGQKRIVPLSSVAVTILKDRL------------STRRIDG---- 108 Query: 287 AVRKMRIDSKTS-WLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEM 345 V + +D+ + + AC++A I D FHDLRH S L + G ++ + G ++++M Sbjct: 109 KVWNIGLDAISQDFAKACQKAEISDLHFHDLRHEATSRLFEKGFDTMEVRTITGHKTLQM 168 Query: 346 VRRYAHLAPNHLTE 359 + RY HL L E Sbjct: 169 LARYTHLRAEDLVE 182 >UniRef50_A1SRZ5 Phage integrase family protein n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SRZ5_PSYIN Length = 337 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 95/376 (25%), Positives = 154/376 (40%), Gaps = 65/376 (17%) Query: 6 RNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGD--LPDVTFEEAC 63 + I Y + GKRI +S K K++AQ + L + L + F +A Sbjct: 10 KKSITYRVEFMRDGKRISKSF--KLKKEAQTFMALLLVDNDLANSLTNHILTTLNFSDAV 67 Query: 64 LRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRK---TKEIWK 120 + L++ D S R+ +W+ F +++ ++ ++ + + R+ N K T +K Sbjct: 68 KKLLDQ--DNGRDPSKHQRLRYWVSVFGSLKVGKVTRQQVKAELKRLSNDKAPATLNRYK 125 Query: 121 QKVQAAIRK-GKELPV-YEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAV 178 + + R E + Y P +K I + E D Sbjct: 126 AALGSLYRYLSDEFDIDYNP--------------VKGIRQYTEND--------------- 156 Query: 179 RNKRVRWLEKEEAKRLIDECPEP----LKSVVKFALATGLRKSNIINLEWQQIDMQRRVA 234 R R+L EE L + L +V A+ TG R+S ++ LEW I+ + + A Sbjct: 157 --ARTRFLSDEELSILFAMVKQSKWDQLFLLVLMAITTGARRSEMLTLEWDDINFKTKTA 214 Query: 235 WVNPEESKSNRAIGVALNDTACKVLRDQ-IGKHHKWVFVHTKAAKRADGTSTPAVRKMRI 293 + P + I D ++++ + IG +VF H P + Sbjct: 215 HL-PNTKNGEQRILTLTGDVITELMKYRCIGG---YVFPHP---------DDPTIYFRNF 261 Query: 294 DSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLA 353 D W SA R I DFRFHDLRHT AS L +G L + ++ G +SI M +RY+HL Sbjct: 262 D--IHWQSALREGEITDFRFHDLRHTCASLLAMNGASLLEIAQVLGHKSITMTQRYSHLC 319 Query: 354 PNHLTEHARKIDDIFG 369 H A+ D +FG Sbjct: 320 IEH---KAKLTDRVFG 332 >UniRef50_A3V904 Phage integrase n=5 Tax=Rhodobacteraceae RepID=A3V904_9RHOB Length = 445 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 65/221 (29%), Positives = 109/221 (49%), Gaps = 23/221 (10%) Query: 148 KHLAMIKAILRAAERDWK--WLEKAPV--IKIPAVRNKRVRWLEKEEAKRLIDECPEP-- 201 + L +++ + A RDWK + P +++ N++ R++ EE L E Sbjct: 168 RRLILLRYMFNLAWRDWKIAGVTGNPTHGVRLLKENNQKERYVRAEELALLYRAVKESQN 227 Query: 202 --LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVL 259 L+ +V F L TG R++ +++ W+ +D+ + + W P+ +KS A V LND A VL Sbjct: 228 KMLQHIVAFLLLTGTRRNEVLHATWEDVDLIKGM-WRIPQ-TKSGFARHVPLNDGAYAVL 285 Query: 260 RDQIGKHHK-WVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRH 318 + G+ ++F P K + +W SA +AG+ D R HDLRH Sbjct: 286 QQMQGRSQSHYIF------------GNPKTGKPYVHVWYAWNSARVKAGLPDVRLHDLRH 333 Query: 319 TWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTE 359 T+AS LI +G + +Q++ G I+ +RYAHL L + Sbjct: 334 TFASLLINNGRSIYEVQKLLGHTQIKTTQRYAHLTQETLLD 374 >UniRef50_B6IMM4 Phage integrase n=1 Tax=Rhodospirillum centenum SW RepID=B6IMM4_RHOCS Length = 442 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 86/299 (28%), Positives = 128/299 (42%), Gaps = 33/299 (11%) Query: 75 SLDSDKSRIEF-------WLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAI 127 +L + ++R EF L GI L ++ +I + + N + + K +AA Sbjct: 132 TLQNARTRKEFDTEAKAHILPALGGIDLSKLTSGRITKWLEGIANSPPR--LRTKTKAAE 189 Query: 128 RKGKELPVYEPKPVSTQ--TKAKHLAMIKAILRAA------ERDWKWLEKAPVIKIPAVR 179 R+ ++ + +P + + T L ++KA L A E D W A V V Sbjct: 190 RRTADVDMSDPDVIRRRRHTANHQLKILKAALNHAYRGKRVETDSAW---ATVRPFKGVS 246 Query: 180 NKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPE 239 RVRWL ++EA RL++ L+++V+ AL TG R + L Q+ID+ +V Sbjct: 247 EARVRWLAQDEAVRLVNASAPDLRAMVRGALLTGCRYEELARLRVQEIDLLNGSVYV--R 304 Query: 240 ESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSW 299 SKS + V L + RD V T+A G S Sbjct: 305 LSKSGKPRHVVLTEEGVAFFRDHTAGRTADDLVFTRANGEPWGKS---------HQHRPI 355 Query: 300 LSACRRAGIED-FRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMV-RRYAHLAPNH 356 AC A I+ FH LRHT ASWL Q GV + V+ G + R YAHL+P+H Sbjct: 356 KDACAAAKIKPAISFHILRHTHASWLAQRGVSMQVIAAQLGHSDTRITERHYAHLSPSH 414 >UniRef50_UPI0000E0E5BD Tyrosine recombinase xerC n=2 Tax=Proteobacteria RepID=UPI0000E0E5BD Length = 383 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 70/264 (26%), Positives = 123/264 (46%), Gaps = 29/264 (10%) Query: 113 RKTKEIWKQKVQAAIR-------KGKELPVYEPKPVSTQTKAKHL-AMIKAILRAAER-- 162 R + +W+ ++Q K EL ++ + Q H+ IK + R Sbjct: 123 RNIESMWRIRIQPTFGHQRLDDIKVLELERFQTSLIEMQLSGSHVTGHIKLLSRMFTLAI 182 Query: 163 DWKWLEKAPVIKIPAVR--NKRVRWLEKEEAKRLID---ECPE-PLKSVVKFALATGLRK 216 W+ + K P K+ ++ N++ R+L +E R I E PE P+ ++ F L TG+R Sbjct: 183 QWELITKNPCDKVEYMKFDNQKERFLSSDEQTRFISVLMEHPERPVNLLMIFLLVTGVRS 242 Query: 217 SNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKA 276 +L W I+M++++ V P +K+ + + LN TA +L+ G + +VF++ Sbjct: 243 GVAKSLRWSWINMEKQIITVPPSIAKNKKQNTIFLNTTAMDILKRLAGINPTYVFIN--- 299 Query: 277 AKRADGTSTPAVRKMRIDSKTSWLSACRRAGIED-FRFHDLRHTWASWLIQSGVPLSVLQ 335 P + D K S+ +A + A I D R HDLRHT+ S L+ + V L+ +Q Sbjct: 300 ---------PMTQLPYNDFKKSFKTALKAAQISDSVRIHDLRHTFCSNLVSNNVSLASVQ 350 Query: 336 EMGGWESIEMVRRYAHLAPNHLTE 359 ++ RYA ++ + L E Sbjct: 351 QLANHACYSTTLRYAKVSQDTLRE 374 >UniRef50_Q1LLU5 Phage integrase n=1 Tax=Cupriavidus metallidurans CH34 RepID=Q1LLU5_RALME Length = 188 Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 55/148 (37%), Positives = 77/148 (52%), Gaps = 14/148 (9%) Query: 210 LATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVL-RDQIGKHHK 268 L TGLR+ ++ LEW ID++ V V +K +R V LN A L R + H Sbjct: 33 LNTGLRRGELLALEWTDIDLEHAVLTVRRATAKGDRTRRVPLNAEALDALTRWKPLAHKV 92 Query: 269 WVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSG 328 +VF DG + KT+WL R A I ++R+HD RH +AS L+ G Sbjct: 93 YVFA------GEDGQPLSEI-------KTAWLQVLRDAKISNYRWHDHRHDFASQLVMRG 139 Query: 329 VPLSVLQEMGGWESIEMVRRYAHLAPNH 356 V L+ L+E+ G ++MV RYAHL+P H Sbjct: 140 VDLNTLRELLGHADLKMVLRYAHLSPEH 167 >UniRef50_UPI00016AD797 phage integrase family protein n=1 Tax=Burkholderia thailandensis MSMB43 RepID=UPI00016AD797 Length = 339 Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 65/239 (27%), Positives = 108/239 (45%), Gaps = 37/239 (15%) Query: 131 KELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRN-----KRVRW 185 + L + +PVS T + + ++ +L A ++W APV + VR R R Sbjct: 111 RRLAGTDGRPVSGSTVNREMNLLHHVLETARKEWGL--GAPVNPVSEVRRPKNSPARERR 168 Query: 186 LEKEEAKRLIDECPEP---------LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWV 236 L +E L+ C + L VV+ AL TG+R+ II LE +Q+ + R + Sbjct: 169 LTSDEKVALLAACRQTHSRSGRQSYLADVVELALETGMRQGEIIKLEIEQVRLDDRFVGL 228 Query: 237 NPEESKSNRAIGVALNDTACKVLRDQIGKHHK---WVFVHTKAAKRADGTSTPAVRKMRI 293 +K+ A V L+ A ++L+ IG WV + + A KRA Sbjct: 229 RAGGTKTEEARTVPLSTRAAEILKSVIGDRTTGRVWVGLTSDAVKRA------------- 275 Query: 294 DSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHL 352 ++ A RAGI+D FHD RH + ++ G+ + + + G ++ M+R+Y HL Sbjct: 276 -----FIRARDRAGIKDLTFHDSRHDATTRFVELGLTDTEVMSITGHKTQSMMRKYTHL 329 >UniRef50_B3CTI8 Putative integrase n=7 Tax=Orientia tsutsugamushi str. Ikeda RepID=B3CTI8_ORITI Length = 379 Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 84/331 (25%), Positives = 145/331 (43%), Gaps = 46/331 (13%) Query: 45 LWRVEKLGDLPDVTFEEACLRWLEEKAD-KKSLDSDKSR--------IEFWLEHFEGIRL 95 ++R KLG+ P+++ A + L K K +D K++ + ++ H +L Sbjct: 54 VYRKIKLGNFPNISVNYARKKTLILKGQIAKGIDPLKTKNASTLKEVYDLYINHR---KL 110 Query: 96 KDISEAKIYSAV-----SRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHL 150 KD S+ +Y + +H I K+ + K+ Y K L Sbjct: 111 KDSSKI-LYKGIMNKYLKNLHYIHVSNIRKEDIYKIFNNAKKGGKYSAN--------KTL 161 Query: 151 AMIKAILRAAERDWKWLEKAPV--IKIPAVRNKRVRWLEKEEAKRL---IDECPEP-LKS 204 +IKAIL A + + +EK P IKI ++ R R++ EE R ++E P LK Sbjct: 162 KLIKAILNIAV-ELELIEKNPANGIKIHKMQ-ARDRYITLEEMPRFLAAVEEDKNPYLKY 219 Query: 205 VVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIG 264 V +L T R++N++++ W+ I ++ V W PE +N K+ + Sbjct: 220 FVYISLYTAARRNNVLSMRWENIRLEEGV-WYIPETKNGESQTVPLINLLIEKLKQYSYS 278 Query: 265 KHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWL 324 +WVF +R G T +W C+RAG+++ R HDLR T SW+ Sbjct: 279 SESEWVF---PGQRRNSGHLTSI--------NVAWKRVCKRAGLKNLRIHDLRRTVGSWM 327 Query: 325 IQSGVPLSVLQEMGGWESIEMVRRYAHLAPN 355 + G+P++V+ ++ + + Y HL N Sbjct: 328 AKFGMPIAVISKLLNHNDHQSTKFYIHLNTN 358 >UniRef50_C4XNH1 Site-specific recombinase n=2 Tax=Desulfovibrio RepID=C4XNH1_DESMR Length = 346 Score = 84.0 bits (206), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 79/269 (29%), Positives = 131/269 (48%), Gaps = 46/269 (17%) Query: 95 LKDISEAKIYSAVSR-MHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMI 153 ++ IS K Y V R M +TK+I A RK +E P V ++I Sbjct: 94 VRRISNLKKYPLVKRIMSTIRTKDI------AEFRKVREEGGAGPDTVRLD-----FSLI 142 Query: 154 KAILRAAERDWKW------LEKAPVIKIPAVRNKRVRWLEKEEAKRLIDECPEP-LKSVV 206 + A+ DW +E A K+P R +R L +E KRL+ C P +++V Sbjct: 143 SRVFVIAKSDWGMESLSNPVEHATKPKLPGGRTRR---LVGDEEKRLLAACQPPEFRAIV 199 Query: 207 KFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKH 266 + A+AT +R+S I+ +EW ++++++ ++ ++K++ A V L++ A ++L D Sbjct: 200 ELAIATAMRRSEILGVEWDSVNLKQQT--IHLADTKNSSARTVPLDERAVEILSD----- 252 Query: 267 HKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLS-ACRRAGIEDFRFHDLRHTWASWLI 325 + K D + D+ W++ AC AGI RFHDLRH S L Sbjct: 253 ----LPRNISGKIWD---------IHEDTIDKWMTKACTAAGIVGLRFHDLRHEATSRLF 299 Query: 326 QSGVPLSVLQ--EMGGWESIEMVRRYAHL 352 +S LS L+ E+ G +S++ ++RYAHL Sbjct: 300 ES-TDLSDLEISEITGHKSLQSLKRYAHL 327 >UniRef50_Q1NPW4 Phage integrase n=5 Tax=Deltaproteobacteria RepID=Q1NPW4_9DELT Length = 465 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 64/182 (35%), Positives = 97/182 (53%), Gaps = 19/182 (10%) Query: 180 NKRVRWLEKEEAKRL--IDECPE--PLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAW 235 N R R+L ++EA RL E E LK +V L G RKS ++N W+ D+ RR +W Sbjct: 289 NGRERYLTEDEAARLKAALESSENTQLKYIVSLLLLLGCRKSELLNSRWEDFDLARR-SW 347 Query: 236 VNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDS 295 P SKS +A V L+ A +VL I + +V + K T P V R Sbjct: 348 RIPL-SKSGKARYVPLSTAALEVL-ASIPRLSPYVVPNPK-------TLQPFVSVFR--- 395 Query: 296 KTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPN 355 SW +A ++AG+ D R HDLRH++AS+L+ SG + + ++ G ++ +RY+HL+ + Sbjct: 396 --SWDTARKKAGLPDVRMHDLRHSFASFLVNSGRSIYEVSQLLGHSQLKTTQRYSHLSND 453 Query: 356 HL 357 L Sbjct: 454 TL 455 >UniRef50_C8VWK7 Integrase family protein n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VWK7_DESAS Length = 389 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 97/390 (24%), Positives = 172/390 (44%), Gaps = 69/390 (17%) Query: 17 PGGKRI--KESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRWLEEKAD-- 72 P GKRI ++ + +R+A++L D AE+ + + + +TF+E +WLE K D Sbjct: 23 PDGKRITHRKVVEATSEREAKKLLDVFSAEVQKGQYIAP-SKLTFKEFSQKWLESKKDLA 81 Query: 73 KKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTK-----EIWKQKVQAAI 127 K+L R K+I ++I A+ + K + + + I Sbjct: 82 PKTL----------------YRYKEILNSRILPAMGHLKIEDIKPFHIMQFYGNLQEPGI 125 Query: 128 RK-GKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKI--PAVRNKRVR 184 R+ GKE +S T H ++ I AA + W+ + P +++ P + + Sbjct: 126 REDGKE------GTLSPATVLYHHRLLTNIFNAAVK-WQIILTNPALRVEAPKAKKHKAT 178 Query: 185 WLEKEEAKRLI---DECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWV----- 236 E+E+ L+ +E P +++V AL GLR+ I+ LEW+ ID+ + V Sbjct: 179 SYEEEDTAALLSALEEQPLKFQAIVYIALGCGLRRGEIMGLEWKDIDLTKGTLEVRQSSQ 238 Query: 237 ----------NPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHT--KAAKRA---- 280 +P+ S R I V +T + + ++ ++ + + V +A+ R Sbjct: 239 YLPGHGTFAKSPKNESSERIIAVP-TETMSLLKQHRVQQNEQRLQVGGLWQASDRLFTTW 297 Query: 281 DGTSTPAVRKMRIDSKTSWLSA-CRRAGIEDFRFHDLRHTWASWLIQSGVPL-SVLQEMG 338 DG + M DS T W S + + FH LRHT AS++I++G+PL ++ +G Sbjct: 298 DG------KPMHPDSITKWFSGFLKNNNLSPLPFHGLRHTAASYMIKAGIPLKNIASRLG 351 Query: 339 GWESIEMVRRYAHLAPNHLTEHARKIDDIF 368 + YAH + E A K++DI Sbjct: 352 HSSPNTTLNIYAHSFKSVDAEAANKMNDIL 381 >UniRef50_B2TH09 Integrase family protein n=4 Tax=Proteobacteria RepID=B2TH09_BURPP Length = 380 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 63/227 (27%), Positives = 106/227 (46%), Gaps = 26/227 (11%) Query: 139 KPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVI-----KIPAVRNKRVRWLEKEEAKR 193 +PVS T LA++ + A +W PV+ KIP R +R+ W E+ R Sbjct: 76 RPVSPNTVRLELALLSDLFNIARIEWGVAVDNPVMRVRKPKIPPGRERRLTWGEERRILR 135 Query: 194 LIDEC-PEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALN 252 + E SVV A+ T +R+ I+ L W+ ID++ R+A + ++ + R + ++L Sbjct: 136 GASQHRNEQFYSVVVLAIETAMRQGEILGLTWENIDLRVRIAHLPATKNGTKRDVPLSLR 195 Query: 253 DTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFR 312 A L K VF +T A K++W + +R G+ D Sbjct: 196 --AVDALTRLGVKTEGPVFNYTSAG-----------------FKSAWRTLLQRIGMMDLH 236 Query: 313 FHDLRHTWASWLIQSG-VPLSVLQEMGGWESIEMVRRYAHLAPNHLT 358 FHDLRH S L + G + + + + G +S++M++RY HL ++L Sbjct: 237 FHDLRHEAISRLFELGTLDMMEVATISGHKSMQMLKRYTHLKASNLV 283 >UniRef50_UPI00003841F3 COG0582: Integrase n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI00003841F3 Length = 394 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/219 (30%), Positives = 100/219 (45%), Gaps = 27/219 (12%) Query: 164 WKWLEKAPVIKIPAVRN---KRVRWLEKEEAKRL---IDECPEPLKS-VVKFALATGLRK 216 W+W+EK P +RN KR R+L EE RL + EP+ + ++ + TG RK Sbjct: 181 WEWIEKNPASG--QLRNPEEKRQRYLSPEELSRLSAALTAHHEPVSADAIRMLMLTGARK 238 Query: 217 SNIINLEWQQIDMQRRVAWVNPE-ESKSNRAIGVALNDTACKVL-RDQIGKHHKWVFVHT 274 S ++ W+ D+ V W P +K + V ++ A +L R + +VF Sbjct: 239 SEVLGATWEMFDLDAGV-WTKPSAHTKQRKEHRVPVSANALTLLKRIRETAEGPYVFP-- 295 Query: 275 KAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVL 334 G P D K SW + C+ A I R HDLRH++AS L+ G L ++ Sbjct: 296 -----GKGGDQPLT-----DVKRSWAAVCKAADITGARIHDLRHSFASLLVSGGASLPII 345 Query: 335 QEMGGWESIEMVRRYAHLAPNHL---TEHARKIDDIFGD 370 M G ++ +RYAHL L +H K D+ G+ Sbjct: 346 GAMLGHTQVQTTQRYAHLYDEPLRAAADHVGKTIDMAGE 384 >UniRef50_B8IQS5 Integrase family protein n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IQS5_METNO Length = 425 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 101/390 (25%), Positives = 164/390 (42%), Gaps = 66/390 (16%) Query: 10 WYASYSLPGGKRIKESLGTKDKRQAQE-----LHDKRK--AELWRVEKLGDLPD----VT 58 W A+ LP GKR++ LG D + H++ K W V L PD +T Sbjct: 49 WLAASRLPDGKRVQVRLGRADDVAQADGSTVLTHEQAKEATRAW-VRSLQAAPDAQPTLT 107 Query: 59 FEEACLRWLEEKADK--KSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMHNRKT 115 +A R+LE + + K++ +SR L R+ D++ K+ Sbjct: 108 VADALERYLEARTAEGMKAVYDARSRARTHILPKLGATRVSDLTLDKLRR---------- 157 Query: 116 KEIWKQKVQAA---IRKGKELPVYEPKPVSTQ----------TKAKHLAMIKAIL----- 157 W+ + A +R GK +PV T + L ++KA L Sbjct: 158 ---WRDAMVHAPKRVRTGKLAKQVNTRPVDLSDPEALRRRRDTANRTLTLLKAALNWAYQ 214 Query: 158 -RAAERDWKWLEKAPVIKIPAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRK 216 + A+ D W P + R VR+L+ E +RL++ C L+ +V AL TG R Sbjct: 215 HQLADNDRAWRLLKPFRDTGSAR---VRFLDAAEQQRLLNTCDGALRDLVATALMTGARF 271 Query: 217 SNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVL-RDQIGKHHKWVFVHTK 275 + L + D ++ E SK+ RA V L + R G+ K + + Sbjct: 272 GELSRLMVRDFDRANGTVFI--ERSKNGRARHVPLTPGGVALFERLSAGRAPKALLL--- 326 Query: 276 AAKRADGTS-TPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVL 334 R +G PA + S+ +A RA +E H+LRH++AS ++++G PL V+ Sbjct: 327 --IRENGEGWGPAT------YQRSFKTALDRAKLESITLHELRHSYASAMVRNGAPLIVV 378 Query: 335 QEMGGWESIEMV-RRYAHLAPNHLTEHARK 363 E G M + YAHLAP+++ + R+ Sbjct: 379 AEALGHSGTRMAEKHYAHLAPSYVADTIRR 408 >UniRef50_A7FCB1 Shufflon-specific DNA recombinase n=2 Tax=Enterobacteriaceae RepID=A7FCB1_YERP3 Length = 375 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 59/221 (26%), Positives = 110/221 (49%), Gaps = 26/221 (11%) Query: 139 KPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKI--PAVRNKRVRWLEKEEAKRLID 196 K +S+ T LA++ + + +W + PV+ + P R R ++ E +RLI Sbjct: 72 KTISSNTVRLELALLSHLFKVGIVEWGIARENPVLLVRKPKASEGRNRRVQPAEHRRLIR 131 Query: 197 ECPE----PLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALN 252 E S++ A+ T +R+ I++L+W+ +D+++ VA + E+K+ + V L+ Sbjct: 132 YADEHSTGECASIINLAIETAMRQGEILSLQWEYVDLRQGVAHL--PETKNGTSRDVPLS 189 Query: 253 DTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFR 312 A ++LR K VF +T ++G K++W ++GI+D Sbjct: 190 AKAREILRKCSPKSSGSVFSYT-----SNGF------------KSAWRCIIIKSGIKDLH 232 Query: 313 FHDLRHTWASWLIQSG-VPLSVLQEMGGWESIEMVRRYAHL 352 FHDLRH S ++SG + + + + G +S+ M++RY HL Sbjct: 233 FHDLRHEGVSRFVESGRLNIMEVAAISGHKSLSMLKRYTHL 273 >UniRef50_C0GUW3 Integrase family protein n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GUW3_9DELT Length = 414 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 85/346 (24%), Positives = 151/346 (43%), Gaps = 49/346 (14%) Query: 35 QELHDKRKAELWRVEKLGDLPDVTF----EEACLRWLEEKADKKSLDSDKSRIEFWLEHF 90 +E+ + R+AE +++K ++ TF E+ L EKA KS D+++ + W++ F Sbjct: 81 REMENVRRAEDIKLKKEQEIASTTFNIIWEKYFLNSQHEKA-YKSWDTERHLYKKWIQPF 139 Query: 91 EGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHL 150 G ++ V+ H K K KE+ +S ++ L Sbjct: 140 IG--------EVFFTKVTAFHLEKIK--------------KEM---RDASLSPRSIGYAL 174 Query: 151 AMIKAILRAAERD--WKWLEKAPVIKIPAVRNKRVRWLEKEEAKRLIDE---CPEPLKSV 205 ++++ + A ++ ++ ++K+P N+R+R+L EA+ L+D + + Sbjct: 175 SVVRQVFCYASDHGIFEGVDPVSLVKMPHYDNRRIRFLTHSEAEILLDVLCFSSQNTHDI 234 Query: 206 VKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGK 265 AL G R I +L WQ ID + V ++K+ + + K+L + Sbjct: 235 ALIALHCGPRAGEIFSLTWQDIDFSQ--GLVTFRDTKNKYVRHIPITKRVRKMLERRSDD 292 Query: 266 HHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFR----FHDLRHTWA 321 + + R S R ++ + W GI+D R FH LRHT A Sbjct: 293 RSSALVFPDRNGGRRKKVSKAFERTIK---ELGW-----NKGIDDPRQKVVFHTLRHTCA 344 Query: 322 SWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDI 367 SWL+ +GVPL ++E G + I RYAHLAP+ L + ++ I Sbjct: 345 SWLVMAGVPLYTVKEYLGHKQISQTERYAHLAPDSLKQATEALNKI 390 >UniRef50_C8VWS4 Integrase family protein n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VWS4_DESAS Length = 381 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 98/392 (25%), Positives = 173/392 (44%), Gaps = 43/392 (10%) Query: 2 SLFRRNEIWYASYSL-PGGKRIKE-SLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTF 59 S+ +R + + Y + GGKR ++ G K K++A+ + +R E+ + + D T Sbjct: 4 SIVKRGKTYSIVYDINQGGKRKQKWESGFKTKKEAEAILAQRINEIEKGTYINPKKD-TL 62 Query: 60 EEACLRWLE-EKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEI 118 E+ +RW + KAD S R E ++ L +I AK+ + K E Sbjct: 63 EDYLIRWFDTHKADLSP--STARRYEGIIKQHLIPSLGNIPLAKLQPLQIQEFLSKELEG 120 Query: 119 WKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAP--VIKIP 176 +Q + + G V+ + + H A+ +A+ DW+ + + P ++K+P Sbjct: 121 GRQDNKKTVGAG-----LSAASVNYEYRVLHKALNQAV------DWQLISRNPADLVKVP 169 Query: 177 AVRNKRVRWLEKEEAKRLIDECPEPLKSVVKF-ALATGLRKSNIINLEWQQIDMQRRVAW 235 K + L +++ RL++E + + F A+ TG+R ++ W+ ID+ R + Sbjct: 170 KPEKKDMVVLSEQDIARLLNEIKDNYLYIPTFLAIYTGMRLGEVLGSTWKDIDLNRGILS 229 Query: 236 VN---------------PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRA 280 V P+ +KS R I ++ T K LR+ KW V + Sbjct: 230 VRQASCQVKADDPEFKAPKTAKSKRNIDIS--QTVVKTLREHKKTQTKWKLV--AGSNWQ 285 Query: 281 DGTSTPAVRKMRIDSKTSWLSACRRAG--IEDF-RFHDLRHTWASWLIQSGVPLSVLQEM 337 D A++ R + S S RR I F FH LRHT AS L+++G+ ++QE Sbjct: 286 DNNLVCALQDGRPINPPSLSSYFRRVASRIGLFVSFHALRHTHASLLLKAGIQPKIVQER 345 Query: 338 GGWESIEMVRR-YAHLAPNHLTEHARKIDDIF 368 G +I + Y+H+ P + A K+DD+ Sbjct: 346 LGHSTIAVTMDIYSHVMPGMQRQAANKLDDML 377 >UniRef50_C0QB98 Putative uncharacterized protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QB98_DESAH Length = 365 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 80/165 (48%), Gaps = 14/165 (8%) Query: 205 VVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIG 264 V+KFAL +G RK +++L W +D + + + +KS +A + LN+ +L Sbjct: 214 VIKFALYSGKRKGEVLSLTWDSVDFENHLLTLQAMNTKSKKAQSLPLNNHCMTILE---- 269 Query: 265 KHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWL 324 + K +D + +W +RAGI RFHDLRHT+AS+L Sbjct: 270 --------RCRKLKVSDYVFPSTLGNYYNTFDETWKRIRKRAGIS-IRFHDLRHTYASYL 320 Query: 325 IQSG-VPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIF 368 SG V + L+E+ G +IEM +RYAHL L D++F Sbjct: 321 ASSGKVDIYTLKELLGHSTIEMTQRYAHLVNGVLKRAVCVADEVF 365 >UniRef50_Q1GIK7 Phage integrase n=5 Tax=Rhodobacteraceae RepID=Q1GIK7_SILST Length = 334 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 62/235 (26%), Positives = 108/235 (45%), Gaps = 33/235 (14%) Query: 142 STQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKRVRWLEKEEAKRLIDECPEP 201 S T L +++ +R A ++ + ++KAP I+ PA + R+LEKEE LID P Sbjct: 115 SQGTIHTELGHLRSAMRFAVKE-RIIDKAPSIERPAKPTPKERYLEKEEIAALIDAASAP 173 Query: 202 -LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKS---------NRAIGVAL 251 + + AT R +++L W ++D QR + + ++SK+ N I AL Sbjct: 174 HIALAIHLLFATAGRIGAVLDLTWDRVDFQRGIINLRLDDSKTRKGRAIVPMNSGIRAAL 233 Query: 252 NDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDF 311 L D + ++ G +RK + +ACRRA ++ Sbjct: 234 QTAHDAALSDYVVEYA--------------GGKVKNIRK-------GFEAACRRAELDGV 272 Query: 312 RFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMV-RRYAHLAPNHLTEHARKID 365 H +RH+ A ++ +GVPL + + G ++ + + YA AP+HL + A +D Sbjct: 273 TLHTIRHSSAVAMVSNGVPLEKVAQYLGHSNVAITYQTYARFAPDHLQDAAEILD 327 >UniRef50_Q1LJF6 Phage integrase n=2 Tax=Betaproteobacteria RepID=Q1LJF6_RALME Length = 366 Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 63/223 (28%), Positives = 108/223 (48%), Gaps = 27/223 (12%) Query: 139 KPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKIPAVRNKRVRWLEKEEAKRLID 196 +P+S TK K +A++ + A + W+ PV I++P+ R R LE+ E +RL+ Sbjct: 139 QPLSDATKRKLVALLSHVFTIARKRWRMAVANPVADIELPSHGKSRKRRLEEGEEQRLLR 198 Query: 197 ECPEPLKS-----VVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVAL 251 E + ++ +V+ A+ T +R+ ++ LEW+ + + ++K+ V L Sbjct: 199 ELAKARQAAIVVPLVRLAIETAMRQGELLALEWKDLRIADTHGTAMLHDTKNGEPRIVPL 258 Query: 252 NDTACKVLRDQIGKHHKW--VFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIE 309 N TAC++L + + K VF AA RA W AC RA IE Sbjct: 259 NATACEIL-GAMPRPLKGGPVFPIKTAALRA-----------------IWEFACERASIE 300 Query: 310 DFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHL 352 RFHDLRH S L + G+ + G +++++++ Y+HL Sbjct: 301 GLRFHDLRHEATSRLFELGLGRIEAASITGHKTLQVLKNYSHL 343 >UniRef50_Q0K8W4 Phage integrase family protein n=1 Tax=Ralstonia eutropha H16 RepID=Q0K8W4_RALEH Length = 348 Score = 80.9 bits (198), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 74/251 (29%), Positives = 111/251 (44%), Gaps = 38/251 (15%) Query: 122 KVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKW-LEKAPV--IKIPAV 178 KV AA R + E +PVS T + L +I +L A ++W L PV I+ P Sbjct: 104 KVLAAYRDRRLKGDGERRPVSGSTVNRELTLISHVLNVANKEWDIHLAINPVSTIRRPRE 163 Query: 179 RNKRVRWLEKEEAKRLIDEC------------------PEPLKSVVKFALATGLRKSNII 220 R R L E RL E P L + AL T +R+ ++ Sbjct: 164 SRGRTRRLGAAEEARLFAELSASPRNGRGHYDKGGSRNPSILPLTI-LALETAMRRGELL 222 Query: 221 NLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRA 280 +L W + ++ R +V +SK+ + V L+ A L + T A+ R Sbjct: 223 SLRWSDVFLEDR--FVRLHDSKNGESRDVPLSTKAVSTL-------APLAELATSASDRV 273 Query: 281 DGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGW 340 TS AV+K ++ AC RAGIE+FRFHDLRH S + + + L + G Sbjct: 274 FPTSADAVKK-------AFTRACERAGIENFRFHDLRHEGTSRIAERLDNVLELSAVTGH 326 Query: 341 ESIEMVRRYAH 351 ++++M+RRY H Sbjct: 327 KTLQMLRRYYH 337 >UniRef50_A6QCM5 Site-specific recombinase, phage integrase family n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6QCM5_SULNB Length = 379 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 52/201 (25%), Positives = 96/201 (47%), Gaps = 20/201 (9%) Query: 177 AVRNKRVRWLEKEEAKRLIDECP---EPLKSVVKFALATGLRKSNIINLEWQQIDMQRRV 233 ++ N R R+L K+EA L+ E + + AL TG R I+ ++++ ID++ R Sbjct: 188 SINNARERYLSKDEANLLLSELKLRRFDVYFMALLALTTGARAGEILKIQYKDIDLENR- 246 Query: 234 AWVNPEESKSNRAIGVALNDTACKVLRD-QIGKHHKWVFV-----HTKAAKRADGTSTPA 287 ++N E+K+ + + + +L + + +K++F H +A Sbjct: 247 -YINLVETKNGSSRKIKITSKVYDILNEIEFESPNKYLFAGSKHDHLQAIPNIYSIIVGE 305 Query: 288 VRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVR 347 + +DS+ + C FH LRHT+ASWL +G P+ +Q++ G + I M Sbjct: 306 LFNSELDSRDTKHRVC---------FHTLRHTFASWLAINGTPIFTIQKLMGHKDINMTL 356 Query: 348 RYAHLAPNHLTEHARKIDDIF 368 RYA L+P+ E +++ F Sbjct: 357 RYAKLSPDAGVEAVNSLEEKF 377 >UniRef50_A3K1Y3 Putative uncharacterized protein n=1 Tax=Sagittula stellata E-37 RepID=A3K1Y3_9RHOB Length = 364 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 104/225 (46%), Gaps = 24/225 (10%) Query: 151 AMIKAILRAAERDWKWLEKAPVIKIPAVRNK---------RVRWLEKEEAKRLIDECPEP 201 A I L+A R +++EK K+ + K RVR L E RL ++ Sbjct: 117 ATINRTLQAMGRALRYMEKHHGAKLAELDFKAVKLAEPKERVRSLTLAEQGRLFEKLRPD 176 Query: 202 LKSVVKFALATGLRKSNIINLEWQQIDMQR-RVAWVNPEESKSNRAIGVALNDTACKVL- 259 L +VKFAL TG R+++I NL W+ ID R+ +SK+ K L Sbjct: 177 LLPLVKFALMTGARQASICNLRWRDIDHDAARMTLQMKTDSKTEAKTMAFPMSREIKALI 236 Query: 260 ----RDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSW---LSACRRAGIEDFR 312 R + H +VF ++ P R++ I + T++ +A AGIEDFR Sbjct: 237 GALPRAEHPPHRDYVFTFEVQNRK-----KPERRRI-IQNSTAFEHFAAAVNAAGIEDFR 290 Query: 313 FHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHL 357 FHDLRHT+A+ +++ L ++ + G I RYAH+ + L Sbjct: 291 FHDLRHTFATRMLRQTQNLKLVSRLLGHSEITTTSRYAHVLDDDL 335 >UniRef50_A4A4J3 Integrase n=3 Tax=Gammaproteobacteria RepID=A4A4J3_9GAMM Length = 377 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 88/388 (22%), Positives = 164/388 (42%), Gaps = 52/388 (13%) Query: 2 SLFRRNE--IWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTF 59 L++R IW+ + G R+ ES GT + +A+ +R E+ + G + +F Sbjct: 7 GLYKRGTQGIWHIDKCVRGYGRLHESTGTSELEEAERYLIRRLEEMRKANVYGIRVERSF 66 Query: 60 EEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIW 119 +A ++L + K+S+ ++ H + L+ + + + S + H RK Sbjct: 67 RQAATKFLLDYQHKRSIGRYAQSLKILDPHVGDLPLRRVHQGTLESFIR--HRRK----- 119 Query: 120 KQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWK------WLEKAPVI 173 + + T + LA+++ IL A R W+ WLE AP++ Sbjct: 120 -------------------QGMRANTINRDLAVVRRILTLAARLWRDDSGLTWLETAPLL 160 Query: 174 KIPAVRNKRVRW-LEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQ---QIDM 229 ++ + R + L +E RL PE L+ + F + TG R+ ++ L W I Sbjct: 161 QLLDCDDARKPYPLSWDEQARLFARLPEHLREMALFKVNTGTREQEVVCLRWDWEVSIPE 220 Query: 230 QRRVAWVNPEES-KSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAV 288 + +V P K+ V +N A V+ Q G++ ++VF ++K + D Sbjct: 221 LKTSVFVVPGGGVKNGEDRLVVMNAEARAVINRQRGRNPEYVFTYSK-GQPVD------- 272 Query: 289 RKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRR 348 RI++K +W A G+ R HDL+HT+ L GV Q + G ++ ++ Sbjct: 273 ---RINTK-AWRRAREEVGLPQARVHDLKHTFGRRLRAKGVSHETRQVLLGHKNGQITTH 328 Query: 349 YAHLAPNHLTEHARKIDDIFGDNVPNMS 376 Y+ L + K+ G + P ++ Sbjct: 329 YSAAEIGELIDAVEKV-SWSGSSAPTLT 355 >UniRef50_C5TV13 Integrase family protein n=1 Tax=Desulfovibrio vulgaris RCH1 RepID=C5TV13_DESVU Length = 395 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 64/240 (26%), Positives = 106/240 (44%), Gaps = 29/240 (12%) Query: 134 PVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV---------IKIPAVRNKRVR 184 P+ E + T + A I+ +L + W + IK P N+R+R Sbjct: 152 PLIEQVASNAMTAGRSAATIRHLLAIISQIWGMARNHEIVNGECPCTRIKKPRKDNRRMR 211 Query: 185 WLEKEEAKRLIDECPEPLKSVVKFALAT---GLRKSNIINLEWQQIDMQRRVAWVNPEES 241 +L + EA L+ E + K AL + GLR I +L W ++ ++ ++ Sbjct: 212 FLTEAEASTLLVELEKRSKDTHDSALLSLFCGLRAGEIHSLTWTDLNFTSGTIYIRDPKN 271 Query: 242 KSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKR--ADGTSTPAVRKMRIDSKTSW 299 K +R + + + R + ++VF AKR T V ++ ++ Sbjct: 272 KHSRHAYMTDEVRSMLIERSKQLNATEYVFPAQNGAKRNWVSDTFERVVDQLGLND---- 327 Query: 300 LSACRRAGIEDFR----FHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPN 355 GI D R FH LRHT+ASWL+Q G PL + E+ G ++EM +RY+HL+P+ Sbjct: 328 -------GITDSRQRVVFHTLRHTFASWLVQDGTPLYTVAELMGHTTLEMTKRYSHLSPD 380 >UniRef50_A8LM37 Integrase family protein n=3 Tax=Rhodobacterales RepID=A8LM37_DINSH Length = 388 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 70/237 (29%), Positives = 103/237 (43%), Gaps = 33/237 (13%) Query: 150 LAMIKAILRAAERDWKWLEKAPVIKIP-AVRNKRVRWLEKEEAKRL---IDECP-EPLKS 204 LA++ + A R W PV +P KR RWL E RL +D P + + Sbjct: 169 LALLSKMFELAIR-WGLRGDNPVKGVPRFAEEKRYRWLSDNELDRLREALDAHPNQRAAN 227 Query: 205 VVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEE-SKSNRAIGVALNDTACKVLRDQI 263 ++ L TG R ++ +W D+ R V WV P +K R + L+ +LR Sbjct: 228 AIRLQLLTGARTGEVLTSQWSDFDLDRGV-WVKPSHHTKQKRTEHLPLSAATVALLR--- 283 Query: 264 GKHHKWVFVHTKAAKRADGTSTPAVRKMRI------DSKTSWLSACRRAGIEDFRFHDLR 317 + A R D +P V R D K W S AG++D+R HD R Sbjct: 284 ----------SIAHGRTD--DSPFVFPGRKPGHPIKDLKRFWTSVTSTAGLKDYRLHDNR 331 Query: 318 HTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIFGDNVPN 374 HT AS L+ SG L ++ + G + +RYAHLA + L R+ ++ G + N Sbjct: 332 HTHASHLVSSGHSLPIVGRLLGHTNPMTTQRYAHLADDPL----RQAAEVMGQKLTN 384 >UniRef50_Q2W780 Integrase n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2W780_MAGSA Length = 321 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 102/221 (46%), Gaps = 19/221 (8%) Query: 148 KHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKRVRWLEKEEAKRLIDEC-PEP-LKSV 205 K ++ + A +R A+ D V ++P+ R RWL + E RL+D P P L + Sbjct: 116 KEISFLAAAIRWAKGD---AGGGAVFELPSPPPPRDRWLTRPEFMRLLDAAQPHPHLVTF 172 Query: 206 VKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGK 265 + ALATG RK I+ L W Q+D ++ + RA+ V + + VL+ Q + Sbjct: 173 LHLALATGARKEAILELTWPQVDFSAGRIFLGNKPGGKARAV-VPMTKSLRTVLQAQNQR 231 Query: 266 HHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLI 325 +V + + K ++ +A R AG++D HDLRHT A W+ Sbjct: 232 REDSGYVVEYGGAKVG------------NIKKAFATAARNAGLDDVTPHDLRHTAAVWMA 279 Query: 326 QSGVPLS-VLQEMGGWESIEMVRRYAHLAPNHLTEHARKID 365 GV + + Q +G + R YA +P+HL + A ++ Sbjct: 280 ADGVSMEKIAQYLGHSDHKITERVYARFSPDHLKDAAAALE 320 >UniRef50_D1C8V1 Integrase family protein n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C8V1_SPHTD Length = 376 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 99/382 (25%), Positives = 157/382 (41%), Gaps = 67/382 (17%) Query: 18 GGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRWLEEKADKKSLD 77 G +R K G R QE+ DK L VE+ LP V+ E +LE + + Sbjct: 30 GTRRRKSFYG----RTRQEVADKLARAL--VEQQYGLPVVSERETVKDYLERWLEDVARP 83 Query: 78 SDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYE 137 S + R E + GI + ++ A + ++R+ + + QK A + Sbjct: 84 SLRPRT---YESYRGIITRHLTPALGRTRLARLSPDQVQRYINQKQAAGL---------- 130 Query: 138 PKPVSTQTKAKHLAMIKAILRAAERDWKWLEK-APVIKIPAVRNKR-VRWLEKEEAKRLI 195 S +T H A+++ L A R W + + A + P +++ R+L EEA+ + Sbjct: 131 ----SPRTVTYHRAVLRKALNDAMR-WGLVSRNAAALAAPPKQDRPPARFLTPEEARHFL 185 Query: 196 DECP-EPLKSVVKFALATGLRKSNIINLEWQQIDM-----------QRR---VAWVNPEE 240 D L+++ ALA GLR+ + L W +D+ QR + V P+ Sbjct: 186 DTVAGHRLEALFTVALAVGLRQGEALGLRWDDVDLEAGTLTVRYALQRSGGALVLVEPKT 245 Query: 241 SKSNRAIGVALNDTACKVLRDQIGKH------------HKWVFVHTKAAKRADGTSTPAV 288 +S R VAL A + LR+ + +VF T T Sbjct: 246 QRSRRT--VALPAVALRALREHRTRQLEERIAAPYWDDQGFVFTSTIGTAIDARNLTREF 303 Query: 289 RKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEM-VR 347 ++R ++ WL RFHDLRH AS L+ GV V+ E+ G I + + Sbjct: 304 HRLRAEAGLPWL-----------RFHDLRHGCASLLMAQGVNPRVVMEILGHSQITLTLG 352 Query: 348 RYAHLAPNHLTEHARKIDDIFG 369 Y+H+AP + A KID I G Sbjct: 353 TYSHVAPTLARDAADKIDGILG 374 >UniRef50_A9AEX0 Tyrosine recombinase n=1 Tax=Burkholderia multivorans ATCC 17616 RepID=A9AEX0_BURM1 Length = 328 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 63/236 (26%), Positives = 109/236 (46%), Gaps = 33/236 (13%) Query: 139 KPVSTQTKAKHLAMIKAILRAAERDWKW--LEKAPVIKIPAVRNKRVRWLEKEEAKRLID 196 K + + LA I A++ A+R+W A ++K P + R R L+ E RL+ Sbjct: 115 KVATNSCVCRELATISAVITHAQREWGLSITNPAKLVKKPRLPPGRNRILKPAELDRLLH 174 Query: 197 ECPEP--------LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIG 248 E L + K AL T +R+ +++LEW+ +D +R A++ ++ +R Sbjct: 175 ELHAERHELRSRWLLPLAKLALETAMRQGELLSLEWRHVDFDQRTAYLPMTKNGKDR--H 232 Query: 249 VALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGI 308 V L+ A +L ++ +R D P + + + +W AC+RA I Sbjct: 233 VPLSSAAIAIL---------------ESLERIDERVIPITQNVVL---CAWPRACKRAAI 274 Query: 309 EDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKI 364 E+F FHDLRH + L + + L + G +++M+ RY H + L ARK+ Sbjct: 275 ENFHFHDLRHMATTNLAKKLPNVIELASVTGHSNVQMLSRYYHTSAGEL---ARKL 327 >UniRef50_Q11LX6 Phage integrase n=1 Tax=Chelativorans sp. BNC1 RepID=Q11LX6_MESSB Length = 333 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 85/355 (23%), Positives = 150/355 (42%), Gaps = 71/355 (20%) Query: 1 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFE 60 + L++R E+W+ ++ G+R+ S T DK AQ L ++ +A+ ++ + G +TF Sbjct: 3 LKLYKRGEVWWYRGTV-AGRRLHASAKTTDKEIAQRLANRAEAQAFKRDLDGPASVLTFA 61 Query: 61 EACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEI-- 118 A +L+ SD+ + LEH++ +KDI+ I A +++ + + Sbjct: 62 HAVTLYLDAG------KSDRFLVPV-LEHWKETLVKDITAGAIRLAAIKVYPKASPSTRN 114 Query: 119 --WKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIP 176 + A I L + P LR ER K+P Sbjct: 115 RQFITPTVAVINHAASLELCPP------------------LRKVER----------FKVP 146 Query: 177 AVRNKRVRW---LEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRV 233 W L E+ E P L ++ F TG R S++ +L W+ ID QRR Sbjct: 147 KKHRDEADWDWVLAFEK------EAPPHLGALAVFGYLTGARLSSLTDLHWKTIDFQRRE 200 Query: 234 AWVNPEESKSNRAIGVA--LNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKM 291 A + ++ + + + L + D+ GK VF ++ Sbjct: 201 AVLWKTKNGHDHVVHLPPHLVVRLANLTTDRGGK----VFGYSS---------------- 240 Query: 292 RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMV 346 R K++W ++ +RAGI+ H LRH +A+ L+++GV + +GGWES ++V Sbjct: 241 RHSVKSAWKASIKRAGIKPLTPHALRHGFATGLLRAGVDPVTVAWLGGWESPQIV 295 >UniRef50_A5CCP8 Phage-related integrase n=25 Tax=Orientia tsutsugamushi RepID=A5CCP8_ORITB Length = 414 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 80/336 (23%), Positives = 144/336 (42%), Gaps = 74/336 (22%) Query: 56 DVTFEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKT 115 D+TF+E C +++EE A +++ W E+ + ++++ ++ +K Sbjct: 122 DITFKELCYKYIEEYAKIYTIN--------WKENAD----------RVHTYAQALYEKKI 163 Query: 116 KEIWKQKVQAAIRKGKELPVYE--PKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVI 173 +I ++ P++ K T LA ++ I A + W +E P + Sbjct: 164 SKIRMSDIE---------PIFNDISKEGKYATANALLATLRTIFNKAIK-WGLIENNPTL 213 Query: 174 KIPAVR-NKRVRWLEKEEAKR----LIDECPEPLKSVVKFALATGLRKSNIINLEWQQID 228 I + R R L +E R L E ++ AL TG RKSN++ +EW ID Sbjct: 214 GIEQHKLQARERRLSYDEMGRFLQVLCGEASPLIRDFALLALYTGARKSNVLEMEWDNID 273 Query: 229 MQRRVAWVNPEESKSNRAIGVALNDTACKVLRD-QIGKHHKWVFVHTKAAKRADGTSTPA 287 +R++ W P ++K+ +A + L D A ++L+ ++ KWV + + S P Sbjct: 274 FERKI-WHIP-KTKNGKAQNIPLTDEAMEILQARKLISTSKWVL--PSSTSESGHLSHP- 328 Query: 288 VRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSG------------------V 329 T+W C +A I++FR HDLR T+AS + +G + Sbjct: 329 --------NTAWKIICEKASIKNFRIHDLRRTFASCMGDAGESQRTISIALNHINPNSTI 380 Query: 330 PLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKID 365 P ++ +E+VR Y A ++E AR + Sbjct: 381 PYTI-------ACMELVREYMSKAIQIISECARSYN 409 >UniRef50_B0UQB2 Integrase family protein n=5 Tax=Rhizobiales RepID=B0UQB2_METS4 Length = 338 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 62/234 (26%), Positives = 106/234 (45%), Gaps = 27/234 (11%) Query: 141 VSTQTKAKHLAMIKAILRAAERDWKW-LEKAPV--IKIPAVRNKRVRWLEKEEAKRLIDE 197 V+ + + L +++ L A R+W L PV IK+P R + LE E+A+ LI Sbjct: 118 VAGDSVRRELTILRHCLEVARREWGIPLPSNPVGQIKLPEPSKGRQQRLEAEQAQALILA 177 Query: 198 CPEP----LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALND 253 L+ +V A+ TG+R+ ++ L W +D+ R+A++ E +K+ + + L+ Sbjct: 178 LKRSRVWYLRPLVNLAIETGMRRGELLTLRWANVDLSSRIAYL--ETTKNGHSRTIPLSP 235 Query: 254 TACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRF 313 A VL+ + + VF T A R +W RAG+ + RF Sbjct: 236 GALSVLKG-LPRTDARVFPLTGNAVR-----------------LAWERLRNRAGLPELRF 277 Query: 314 HDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDI 367 HDLRH S + G+ + + + G + RY HL P L + ++ D+ Sbjct: 278 HDLRHEAISRFFEIGLSIPEVALISGHRDTRTLMRYTHLRPEVLAKKLQQARDV 331 >UniRef50_Q8XZ52 Putative integrase/recombinase protein n=1 Tax=Ralstonia solanacearum RepID=Q8XZ52_RALSO Length = 354 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 65/222 (29%), Positives = 104/222 (46%), Gaps = 20/222 (9%) Query: 141 VSTQTKAKHLAMIKAILRAAERDWKWLEKAPV---IKIPAVRNKRVRWLEKEEAKRL--- 194 V+ T + L +I A L+ A +W V ++ P+ RVR L EE L Sbjct: 133 VAPSTVNRELNIINAALKVAVHEWDVAICQSVLTSVRRPSNPPGRVRRLSPEEEAALRQA 192 Query: 195 IDECPEP-LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALND 253 +E P + ++ AL T +R+ I+ LEW++I R + E+K+ GV L+ Sbjct: 193 GEETRNPYIVPILDLALNTAMRRGEILGLEWERISFAHR--SIQLIETKNGTPRGVPLSR 250 Query: 254 TACKVLRD--QIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDS-KTSWLSACRRAGIED 310 A KVL Q+ H + + S P + ++ K ++ RAG+E+ Sbjct: 251 HAMKVLATLKQVAAH--------ELGYEGELNSGPVFPGLTANAFKLAFNRMMERAGLEN 302 Query: 311 FRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHL 352 FRFHDLRH S L + G+ + + + G + I M++RY HL Sbjct: 303 FRFHDLRHEATSRLFEKGLSVMEVASITGHKDIRMLQRYTHL 344 >UniRef50_Q1K3L6 Phage integrase n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K3L6_DESAC Length = 397 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 60/242 (24%), Positives = 119/242 (49%), Gaps = 26/242 (10%) Query: 141 VSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKRVR--WLEKEEAKRLID-- 196 S T +HL+++ +I + A ++ LEK P I + R R +L+++E R I Sbjct: 164 TSGTTGNRHLSLLSSIFKLA-LEYDLLEKNPCRGIKKAKENRSRDRFLQEDEYTRFIQVL 222 Query: 197 --ECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDT 254 + +P + +A G+RKS +++L W+ + + R ++ ++K+ + VALN Sbjct: 223 QTKLDQPSACAIFLLIALGMRKSELLSLRWEDVSLADR--HLHLRDTKNGESRYVALNSV 280 Query: 255 ACKVLRDQIGKH---HKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDF 311 + +L K + WVF +++ D + ++ + CR + I Sbjct: 281 SHGLLTKMKQKRKASNPWVFPSRTSSESGHLQ----------DVRRTFATVCRESKITGL 330 Query: 312 RFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEH----ARKIDDI 367 R HDLR + AS L+ +GV +S++ ++ G +S++ + YA +A + L +RKI+++ Sbjct: 331 RIHDLRRSHASHLLNAGVDISIVGKILGHKSLKSTQIYAKVATSSLARTSEIASRKIEEV 390 Query: 368 FG 369 Sbjct: 391 MN 392 >UniRef50_A1WTV4 Phage integrase family protein n=1 Tax=Halorhodospira halophila SL1 RepID=A1WTV4_HALHL Length = 379 Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 69/274 (25%), Positives = 127/274 (46%), Gaps = 38/274 (13%) Query: 104 YSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAA-ER 162 + A+ + +K +I + +V+A + K Y P V + L +I + + A + Sbjct: 126 HHALPTLGTKKMSDINRNQVEAIMNDMKSRG-YAPSTVD-----RVLTLISYMFKVAMDN 179 Query: 163 DWKWLEKAPV--IKIPAVRNKRVRWLEKEEAKRLIDEC-----PEPLKSVVKFALATGLR 215 + + P IK P + NK +L +EE R+++ P + S+++ A+ TG R Sbjct: 180 EIPGVVSNPTEKIKRPVIDNKIENYLTREEVNRMLEAARRRNHPH-IYSIIRMAVLTGAR 238 Query: 216 KSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTK 275 K+ I++ ++ D+ ++ W P+ +R V L + A +++ K Sbjct: 239 KAEILSARFEDFDLDNKI-WNIPKGKNGSRK--VILAEKAVQMV---------------K 280 Query: 276 AAKRADGTS----TPAVRKMRIDSKTSWLSACRRAGI-EDFRFHDLRHTWASWLIQSGVP 330 + +GT P K + + + R +GI E RFHDLRH++AS L+Q GV Sbjct: 281 ELPKQEGTDLLFPQPGTDKPYQCIQKPFKAVLRDSGIDESVRFHDLRHSYASLLVQGGVN 340 Query: 331 LSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKI 364 + ++E+ G I RYAHL+ L H+ ++ Sbjct: 341 IYEVKELLGHSQITTTMRYAHLSAQGLRNHSNRL 374 >UniRef50_B2K361 Integrase family protein n=16 Tax=Gammaproteobacteria RepID=B2K361_YERPB Length = 351 Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 92/357 (25%), Positives = 158/357 (44%), Gaps = 62/357 (17%) Query: 19 GKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRWLEEKADKKSLDS 78 GKRI++ TK + A E H ++E++ D P WL E+ DK+SL+ Sbjct: 26 GKRIRKKFATKGEALAFERH--------KLEEIQDKP----------WLGEEKDKRSLNE 67 Query: 79 DKSRIEFWLEHF-----EGIRLKDISEAKIYSAVSR-MHNRKTKEIWKQKVQAAIRKGKE 132 I W +G+R KD + Y + + + + +++ Q + + KG+ Sbjct: 68 ---LISTWYNAHGITLDDGLRRKD-AMNHFYECMGKPLATEFSAQLFSQYREKRL-KGEL 122 Query: 133 LPVYEPKPVSTQTKAKHLAMIKAILRAAER--DWKWLEKAPVIKIPAVRNKRVRWLEKEE 190 V+ +T LA +A+ ER +WK L ++ + +L +++ Sbjct: 123 ARSTRVTKVAPRTLNLELAYFRAMFNELERLGEWKLLNPIKSVRAFKTEESEMAFLTRDQ 182 Query: 191 AKRLIDECP----EPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRA 246 + L+DEC E L +VVK L+TG R S L+ Q+ + ++ ++ + + NR Sbjct: 183 IELLLDECKKSSIECLATVVKICLSTGARWSEAEGLKLSQLT-EHKITFIKTK-GRKNRT 240 Query: 247 IGVALNDTACKVLRDQIGKHHK-WVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRR 305 + ++ K L D++ K K +F A R A+++ I+ LS Sbjct: 241 VPIS------KELYDELPKKGKSGLFTACYAEFRR------ALKRSEIELPPGQLS---- 284 Query: 306 AGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHAR 362 H LRHT+AS + G + VLQ + G I+M RY+H +P+HL E R Sbjct: 285 --------HVLRHTFASHFMMKGGNILVLQRILGHTDIKMTMRYSHFSPDHLDEALR 333 >UniRef50_A1VC91 Phage integrase family protein n=1 Tax=Desulfovibrio vulgaris DP4 RepID=A1VC91_DESVV Length = 372 Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 108/229 (47%), Gaps = 31/229 (13%) Query: 142 STQTKAKHLAMIKAILR--AAERDWKWLEKAPVIKIPAVRNKRVRWLEKEEAKRLIDECP 199 S QT L +++ + R AA ++K + +P V N R+R+L +EA RL+ Sbjct: 139 SPQTVKHALGLLRRVYRKMAAWGEYKGDIPTVSVPMPKVDNGRLRFLTPDEAVRLV---- 194 Query: 200 EPLK-------SVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALN 252 E L+ V +L GLR I+ L+ +D+ R+ V + + R + +A + Sbjct: 195 EALRKRSVLWADVSLVSLHAGLRLDEILGLQACHVDIDNRLLHVMDAKCGT-RTVPLA-D 252 Query: 253 DTACKVLRDQ---IGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIE 309 C++LR + +VF + +R + S VR ++ GI Sbjct: 253 RGLCEMLRQRKAACSGAEDFVF-KNRNGERINNISQTVVRVIQ--------DLGFNHGIT 303 Query: 310 DFR----FHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAP 354 D R FH LRHT+ SW+ Q GVPL V+ E+ G ++EM RRY+ L P Sbjct: 304 DRRHKVVFHTLRHTFGSWMAQRGVPLYVIGELMGHSTLEMTRRYSKLCP 352 >UniRef50_B0UKQ5 Integrase family protein n=2 Tax=Rhizobiales RepID=B0UKQ5_METS4 Length = 430 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 100/360 (27%), Positives = 150/360 (41%), Gaps = 49/360 (13%) Query: 32 RQAQELHDKRKAELWRVE--KLGDLPDVTFEEACLRWLEEKADKKSLDSDKSRIEFWLEH 89 RQAQEL R + K G L EA L +L+ A++KS + R + ++ Sbjct: 82 RQAQELARARMVQRAHAAAGKTGPLTVQDAVEAYLAFLD--ANRKSGLDARHRAQAFIYP 139 Query: 90 FEG-IRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVY-EPKPVSTQTKA 147 G + ++ ++ AK+ ++ + KT + K A R +E+P E + T Sbjct: 140 LLGDVEVEALTTAKLSRWLTDLA--KTPPRIRTKAGAEQRY-REVPDDDESRRRRRSTAN 196 Query: 148 KHLAMIKAILRAAER------DWKWLEKAPVIKIPAVRNKRVRWLEKEEAKRLIDECPEP 201 + L ++KA L A R D W P + A R VR+L EA+RLI+ Sbjct: 197 RTLTVLKAALNRAWRAGQVSSDAAWRRVEPFENVDATR---VRYLTVTEAQRLINAADPD 253 Query: 202 LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEE-------SKSNRAIGVALNDT 254 + +V+ AL TG R ++ L RVA NP+ SKS + + L D Sbjct: 254 FRVLVQGALQTGARYGELVAL---------RVADFNPDSGTLSIRRSKSGKPRHIVLTDE 304 Query: 255 ACKVLRDQIGKHHKWVFVHTKAAKRADGTS---TPAVRKMRIDSKTSWLSACRRAGIEDF 311 + + KA+ A G+S P R T W+S Sbjct: 305 GAAFFARHVAGRAGSDLMFVKASGAAWGSSHQLRPMADACRNGRITPWIS---------- 354 Query: 312 RFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIFGD 370 FH LRHTWAS + + PL V+ G MV + Y HLAP+++ E R FG+ Sbjct: 355 -FHGLRHTWASLAVMNSTPLMVVARNLGHADTRMVEKHYGHLAPSYVAEAIRAGAPRFGE 413 >UniRef50_P10487 Shufflon-specific DNA recombinase n=21 Tax=root RepID=RCI1_ECOLX Length = 384 Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 64/221 (28%), Positives = 100/221 (45%), Gaps = 27/221 (12%) Query: 139 KPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKIPAVRNKRVRWLEKEEAKRL-- 194 KP++ T LA++ ++ A +W PV ++ P V + R R L E +RL Sbjct: 74 KPITGNTVRLELALLSSLFNIARVEWGTCRTNPVELVRKPKVSSGRDRRLTSSEERRLSR 133 Query: 195 -IDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALND 253 E L + AL T +R+ I+ L W+ ID++ VA + E+K+ + V L+ Sbjct: 134 YFREKNLMLYVIFHLALETAMRQGEILALRWEHIDLRHGVAHL--PETKNGHSRDVPLSR 191 Query: 254 TACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRF 313 A L+ H VF +T + K +W A +R IED F Sbjct: 192 RARNFLQMMPVNLHGNVFDYTASG-----------------FKNAWRIATQRLRIEDLHF 234 Query: 314 HDLRHTWASWLIQSGVPLSVLQ--EMGGWESIEMVRRYAHL 352 HDLRH S + G L+V++ + G S+ M++RY HL Sbjct: 235 HDLRHEAISRFFELG-SLNVMEIAAISGHRSMNMLKRYTHL 274 >UniRef50_B9JF62 Tyrosine site-specific integrase/recombinase protein n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JF62_AGRRK Length = 431 Score = 77.8 bits (190), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 51/180 (28%), Positives = 90/180 (50%), Gaps = 21/180 (11%) Query: 204 SVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQI 263 + ++ L TG R+S I+ L W +D++R + ++ +SK+ + V L+ A +L + + Sbjct: 267 AAIRLYLFTGCRRSEILRLTWSDVDLERGILFL--PDSKTGKKP-VILSPQAQAILTN-L 322 Query: 264 GKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASW 323 + K+V A + + R D W + RRAG+ R HDLRHT+AS Sbjct: 323 TRVGKYVIAGADAGTKDEAP--------RADIDRPWKAVTRRAGLHKLRLHDLRHTYASI 374 Query: 324 LIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIFGDNVPNMSHSEIMED 383 G L ++ ++ G ++I +RYAHL N + +++ GD++ S+ MED Sbjct: 375 GAGGGQGLPIIGKLLGHKNIATTQRYAHLDTNPM----KRVAGFIGDHI-----SQAMED 425 >UniRef50_B1FJ84 Integrase family protein n=1 Tax=Burkholderia ambifaria IOP40-10 RepID=B1FJ84_9BURK Length = 332 Score = 77.8 bits (190), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 65/219 (29%), Positives = 102/219 (46%), Gaps = 25/219 (11%) Query: 141 VSTQTKAKHLAMIKAILRAAERDWKW-LEKAPVIKI--PAVRNKRVRWLEKEEAKRLIDE 197 VS T + L ++ + A +W L PV +I P R R E E L+ E Sbjct: 122 VSGSTVNRELNLLSHVFSTAMIEWDIHLPVNPVSRIRRPKHNKPRNRRTEGGEESLLLYE 181 Query: 198 CPEP----LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALND 253 C + L V A+ TG+R+S ++ +EW ID++RRV W+ +SK+ VAL+ Sbjct: 182 CRKARNKHLYPAVLLAIETGMRRSEVVGIEWPNIDLKRRVLWL--PDSKNGEGRAVALST 239 Query: 254 TACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRF 313 A + L + VF G + A+ K ++ A +RA I+ RF Sbjct: 240 RAAQALAAIATDRNGPVF---------PGLTVDAI-------KCAYRRARKRAKIDGLRF 283 Query: 314 HDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHL 352 HDLRH S L + G+ + + G +++ M++RY HL Sbjct: 284 HDLRHEATSRLFEKGLNPMEVASITGHKTLSMLQRYTHL 322 >UniRef50_A3VQY7 Phage integrase n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VQY7_9PROT Length = 421 Score = 77.8 bits (190), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 64/232 (27%), Positives = 109/232 (46%), Gaps = 25/232 (10%) Query: 142 STQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIP-AVRNKRVRWLEKEEAKRL---IDE 197 T T + + K++L A +D ++++ + A K+ R+L EA RL +DE Sbjct: 194 GTGTAKRTMVSFKSVL-AYMKDIGFVDQNVAANLRLAPDGKKERYLSVAEAHRLGKCLDE 252 Query: 198 CPEPLK-----SVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALN 252 + + ++++ L TG R I L+W +ID R ++ EE+KS R+I ++ Sbjct: 253 WEQMDRRMTGITIIRLLLMTGARTKEIEELKWSEIDFDR--SFFRFEETKSGRSI-RPIS 309 Query: 253 DTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFR 312 +L+ H WVF++ GT + W AG+ D R Sbjct: 310 PQVLDILKGLPRLHPTWVFLNNAGTGPYCGT------------QAVWRLVREEAGLPDVR 357 Query: 313 FHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKI 364 HDLRH++AS+ + +G+ L V+ + G E +RYAHL+ H E A+ + Sbjct: 358 KHDLRHSFASFALANGLSLPVIGTLLGHSRPETTQRYAHLSDRHAMEAAKSV 409 >UniRef50_A7HHG2 Phage integrase family protein n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HHG2_ANADF Length = 365 Score = 77.8 bits (190), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 65/262 (24%), Positives = 119/262 (45%), Gaps = 16/262 (6%) Query: 107 VSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKW 166 V + +R+ ++ ++ V+ K E P + T + +A++K + A + Sbjct: 97 VEHLGSRRAAKLTRKDVEEYREKRFEETTRRGGPPAPGTIDREIALLKRCINFAI-ECGT 155 Query: 167 LEKAPVIKIPAVR--NKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEW 224 L + P+ +P + N R L+ +R++ P V++F TGLRK+ + L W Sbjct: 156 LVRNPIAAVPLLNEPNTRDMVLKPVMLERILKAAPPTFAPVIEFDYETGLRKTELRFLRW 215 Query: 225 QQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGK-HHKWVFVHTKAAKRADGT 283 +Q+D+ ++ +E+K+N A V L A ++LR + H +VFV+ Sbjct: 216 EQVDLGLGCIRLSAKETKTNEARVVYLTSRALEILRATPRQLHSPYVFVN---------- 265 Query: 284 STPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESI 343 P + + AC RAG FHDLR ++ + +SGVP SV+ ++ G ++ Sbjct: 266 --PDTGRPWSEHNKMLRRACERAGYAGIWFHDLRRSFVTNARRSGVPESVVMKLSGHKTR 323 Query: 344 EMVRRYAHLAPNHLTEHARKID 365 + RY + L +ID Sbjct: 324 SVFDRYNIIDEGDLKAAVERID 345 >UniRef50_D0ZP51 Integrase n=5 Tax=Salmonella enterica subsp. enterica RepID=D0ZP51_SALT1 Length = 62 Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 35/42 (83%), Positives = 38/42 (90%) Query: 345 MVRRYAHLAPNHLTEHARKIDDIFGDNVPNMSHSEIMEDIKK 386 M+ RYAHLAPNHLTEHARKIDDIFGD+VPNMSH E E+IKK Sbjct: 1 MIHRYAHLAPNHLTEHARKIDDIFGDDVPNMSHMENKEEIKK 42 >UniRef50_D2YQV3 Phage integrase family protein n=2 Tax=Vibrio RepID=D2YQV3_VIBMI Length = 402 Score = 77.4 bits (189), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 65/217 (29%), Positives = 104/217 (47%), Gaps = 18/217 (8%) Query: 163 DWKWLEKAPVIKIPAVR--NKRVRWLEKEEAKRLIDEC-PEPLKS---VVKFALATGLRK 216 +W +++ P I ++ N R R+L + E I C EP ++ +KFAL TG+R Sbjct: 191 EWGYVDSNPGQYIRKLKENNVRQRFLSRAEVSSFIKACNEEPNRTQSNALKFALLTGMRI 250 Query: 217 SNIINLEWQQIDMQRRVAW-VNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTK 275 I + +W+ + + W + +KS + V LN A +V+ DQ ++ + Sbjct: 251 GEITSSKWECLTVDDDGNWSLFLPHTKSGLSRTVLLNHLAKEVINDQ----RRFQQLKNP 306 Query: 276 AAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIED-FRFHDLRHTWASWLIQSG-VPLSV 333 D P K ++ + AGI D FR HDLRH++AS LI SG L Sbjct: 307 YIFAGDAPGRPIAH-----PKKAFARIKKAAGITDNFRIHDLRHSFASILINSGNATLYD 361 Query: 334 LQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIFGD 370 +Q + G +S + RYAHLA + L E + + ++ GD Sbjct: 362 VQHLLGHQSPQTSTRYAHLASSRLREVSANVAELVGD 398 >UniRef50_C1SNQ2 Site-specific recombinase XerD n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SNQ2_9BACT Length = 342 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 88/367 (23%), Positives = 159/367 (43%), Gaps = 62/367 (16%) Query: 12 ASYSLPGGKRIKESLGTKDKRQAQELH--------DKRKAELWRVEKLGDLPDVTFEEAC 63 +Y + + K SLGTK+K +A+ + K+ A+L + E + + F C Sbjct: 9 GTYYVIIDRNHKRSLGTKNKAEAERIFKALKKSDFQKKIADLEKTETISE-----FFADC 63 Query: 64 LRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKV 123 L + K +K + S + + L FEG I E K+ + V++ + + ++ Sbjct: 64 LEDYKYKKEKATYTS----MSYSLNAFEGF----IGE-KLLNGVTK---KDLSDFTTHRL 111 Query: 124 QAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV-----IKIPAV 178 +A Y ++ + A KA+ +W+ L + P+ +KI Sbjct: 112 KAG---------YAKTSINIDIRNIKAAFSKAV------EWEKLAQNPLNGFKQLKIDKN 156 Query: 179 RNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNP 238 K + + + ++ ++ + PL+ F + TG R+S + L W ID R V V+ Sbjct: 157 LPKFLTFDDLDKFANILGD--NPLRHAFFFYVLTGCRRSEALVLTWDDIDFTRMV--VHI 212 Query: 239 EESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTS 298 ++K++ A + + D+ ++L + I ++F + GT + D+ T Sbjct: 213 RKTKNHEARDIPICDSLYELL-NGITPKQGYLF-----PGKIKGTH------LDKDTMTH 260 Query: 299 WLSAC-RRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHL 357 + C AG D R HDLRHT+AS L SG L ++++ G I YAHL +HL Sbjct: 261 NIKDCLTEAGFPDMRLHDLRHTFASLLALSGETLQTIRDLLGHSDIRTTEIYAHLTADHL 320 Query: 358 TEHARKI 364 K+ Sbjct: 321 KAAVNKL 327 >UniRef50_Q0F389 Site-specific recombinase, phage integrase family protein n=3 Tax=Proteobacteria RepID=Q0F389_9PROT Length = 331 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/211 (28%), Positives = 106/211 (50%), Gaps = 27/211 (12%) Query: 150 LAMIKAILRAAERDW--KWLEKAPVIK--IPAVRNK-RVRWLEKEEAKRLIDECPE---P 201 LA+I + A RDW +L PV + +P+V+ R R L+ E +L+ C E Sbjct: 130 LAVISHLFTVASRDWGMNYLSN-PVARGVMPSVKQTARDRRLQPGEEDQLMQACKEYGGV 188 Query: 202 LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRD 261 + +V FAL T +R++ I +L W+ D+ +A ++ ++K+ V L+ A +++ Sbjct: 189 IGDIVMFALETAMRRAEIASLRWE--DIHGNIARLH--DTKNGERRDVPLSSRAREII-- 242 Query: 262 QIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWA 321 H+ V + KR G + + + ++ C+ AGI D RFHDLRH Sbjct: 243 -----HRRAKVRSLNDKRVFGIAPNGISQ-------AFSRVCKHAGIVDLRFHDLRHEAT 290 Query: 322 SWLIQSGVPLSVLQEMGGWESIEMVRRYAHL 352 S L + G+ + + G ++++M++RY HL Sbjct: 291 SRLFERGLNPMQVASITGHKTLQMLKRYTHL 321 >UniRef50_B3T0I4 Putative Phage integrase family protein n=2 Tax=root RepID=B3T0I4_9ZZZZ Length = 422 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 84/319 (26%), Positives = 140/319 (43%), Gaps = 49/319 (15%) Query: 58 TFEEACLRWLEEKADK----KSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNR 113 T E C R+LE+ A + SL SD+ IE H + ++ + ++ + R Sbjct: 104 TVAELCERYLEDYAKEHKKPSSLKSDQKNIE---NHVLPLLGREFVASVTFADIDR---- 156 Query: 114 KTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKA---KHLAMIKAILRAAERDWKWLEKA 170 +K+ V+ + P ++ P T K + LA++ + AER W W Sbjct: 157 -----FKRAVKDGKSSRERKPEHQGGPNVTGGKGVANRCLALLSKMFNLAER-WGWCSVG 210 Query: 171 P-----VIKIPAVRNKRVRWLEKEEAKRLID-----ECPEPLK-SVVKFALATGLRKSNI 219 V + P NKR ++L +E L + E P + ++ + TG R I Sbjct: 211 SNPCRHVDRYP--ENKREKFLSDKELAALAEVLNKSESENPYAVAAIRMLIFTGARLGEI 268 Query: 220 INLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIG-KHHKWVFVHTKAAK 278 ++LEW +DM+R + + P+ +A V L+ A VL + K++ V K Sbjct: 269 LHLEWAHVDMERAMLLL-PDPKTGQKA--VFLSAPALDVLANLPHMKNNPHVICGEK--- 322 Query: 279 RADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMG 338 DG+ ++ + W +RAG+ED R HDLRH++AS G+ L ++ ++ Sbjct: 323 --DGSHL-------VNLQKPWGRIRKRAGLEDVRLHDLRHSFASVAASGGLSLPMIGKLL 373 Query: 339 GWESIEMVRRYAHLAPNHL 357 G RYAHLA + L Sbjct: 374 GHTQAATTARYAHLAADPL 392 >UniRef50_Q1MNY2 Integrase n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MNY2_LAWIP Length = 383 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/206 (28%), Positives = 100/206 (48%), Gaps = 17/206 (8%) Query: 173 IKIPAVRNKRVRWLEKEEAKRLIDEC-PEPLKSVVKF---ALATGLRKSNIINLEWQQID 228 I +P V N++ L K + K L+ EP +S V F AL TG+RKS ++ L+W D Sbjct: 188 IDMPKVDNQKTEILSKNQLKNLLLALDAEPNQSDVAFIRLALVTGMRKSALLALKWSDCD 247 Query: 229 MQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAV 288 + + ++ +K + + +N++A +L + ++F KR + + Sbjct: 248 FENNIITLSGNYAKKGKTDYIPMNNSAKSILLSIPKGNSDFIFATRNGTKRTT-YNQRLI 306 Query: 289 RKMRIDSKTSWLSACRRAGIEDFR-FHDLRHTWASWLIQSG-VPLSVLQEMGGWESIEMV 346 ++++ +K +DFR H LRH +AS L SG V L +Q + E+ M Sbjct: 307 KRIKEKAKLP----------KDFRPLHGLRHNFASRLASSGKVDLYTIQRLLTHETPAMT 356 Query: 347 RRYAHLAPNHLTEHARKIDDIFGDNV 372 +RYAHL + L + A IDD F + + Sbjct: 357 QRYAHLHNDALKKAAAIIDDEFTETL 382 >UniRef50_D2L4K8 Integrase family protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L4K8_9DELT Length = 395 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 83/317 (26%), Positives = 143/317 (45%), Gaps = 53/317 (16%) Query: 66 WLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQA 125 + K + +L +D+SR E +++ G K+ +E + + RM +R Sbjct: 101 YASHKPENHALSTDRSRFETYIKPAFG--EKEPAEV-LTLDLDRMRSR------------ 145 Query: 126 AIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAP-----VIKIPAVRN 180 +++GK S QT LA+ K ++R + K L +P I +P V N Sbjct: 146 LLKQGK----------SPQTVKHVLALFKRLVRFGVK--KGLCDSPDPRKQTISMPRVDN 193 Query: 181 KRVRWLEKEEAKRLI----DECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWV 236 + L+ +E RL+ DE + ++ A+ TG+R+ + LEW+ +D +R ++ Sbjct: 194 ETTEDLDADELARLVQAIEDEPNIQAANFMRLAMFTGMRRGELFKLEWRDVDFER--GFI 251 Query: 237 NPEESKSNRAIGVALNDTACKVLRDQIG-KHHKWVFVHTKAAKRADGTSTPAVRKMRIDS 295 + K ++ + LND A VL ++ +VF +R T V RI + Sbjct: 252 HIRHPKGGKSQKIPLNDAARAVLASHPHVENSPYVFPGQGGKQRV----TIQVASNRIKA 307 Query: 296 KTSWLSACRRAGIEDFR-FHDLRHTWASWLIQSG-VPLSVLQEMGGWESIEMVRRYAHLA 353 + S + DFR H LRH +AS L SG V L LQ++ +S M +RY+HL Sbjct: 308 RASLPA--------DFRPLHGLRHLFASTLASSGQVDLLTLQKLLTHKSPNMTKRYSHLR 359 Query: 354 PNHLTEHARKIDDIFGD 370 + L + + D+ G+ Sbjct: 360 DDALKQASGVASDLLGN 376 >UniRef50_C8R239 Integrase family protein n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R239_9DELT Length = 332 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 59/227 (25%), Positives = 105/227 (46%), Gaps = 28/227 (12%) Query: 142 STQTKAKHLAMIKAILRAAERDWKW-LEKAPV---IKIPAVRNKRVRWLEKEEAKRLIDE 197 + QT L ++ +L+A DW L V ++ P+ + R R LE E ++L+ Sbjct: 120 APQTVKHDLGLLNRVLKACVMDWGIPLPHGIVTAQVRKPSPPSGRDRRLESREEEKLLAA 179 Query: 198 C----PEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALND 253 ++ ++ AL T R++ I ++ W+ I++ +R+ ++ +K+ A V L+ Sbjct: 180 AQASKSREIEKIITIALETAARRAEIASMRWEHINLDKRIWFIPAAATKTKTARTVPLST 239 Query: 254 TACKVLRDQIGK--HHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDF 311 A VL+ + W F H DG + ++ C+RA IED Sbjct: 240 GAMAVLQGLPRRIDGQVWSFSHP------DGITQ------------AFDRICKRAEIEDL 281 Query: 312 RFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLT 358 RFHDLRH S L + G+ + + + G + ++M++RY HL L Sbjct: 282 RFHDLRHEATSRLFEKGLNMMEVAAITGHKDLKMLKRYTHLKAEDLV 328 >UniRef50_P21442 Integrase n=10 Tax=root RepID=VINT_BPHP1 Length = 337 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 82/307 (26%), Positives = 139/307 (45%), Gaps = 48/307 (15%) Query: 78 SDKSRIEFWLEHFEGIRLKDISE-----AKIYSAVSRMHNRKTKEIWKQKVQAAIRKGK- 131 SD + F+++ + + K +S+ AK+ + S + + E + K+ A RK + Sbjct: 57 SDLPALSFYVQEWFDLHGKTLSDGKARLAKLKNLCSNLGDPPANE-FNAKIFADYRKRRL 115 Query: 132 --ELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKIPAVRNKRVRWLE 187 E V + P T + A ++A+ + KW + P+ +++ R + +L Sbjct: 116 DGEFSVNKNNPPKEATVNREHAYLRAVFNELKSLRKWTTENPLDGVRLFKERETELAFLY 175 Query: 188 KEEAKRLIDECPEP----LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKS 243 + + RL+ EC L +V+ LATG R S L Q+ M ++ + N +SK Sbjct: 176 ERDIYRLLAECDNSRNPDLGLIVRICLATGARWSEAETLTQSQV-MPYKITFTN-TKSKK 233 Query: 244 NRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSAC 303 NR + ++ K L D + K +F D+ S+ +A Sbjct: 234 NRTVPIS------KELFDMLPKKRGRLFN---------------------DAYESFENAV 266 Query: 304 RRAGIEDFR---FHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEH 360 RA IE + H LRHT+AS + +G + VL+E+ G +IEM RYAH AP+HL E Sbjct: 267 LRAEIELPKGQLTHVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRYAHFAPSHL-ES 325 Query: 361 ARKIDDI 367 A K + + Sbjct: 326 AVKFNPL 332 >UniRef50_C4KAG8 Integrase family protein n=1 Tax=Thauera sp. MZ1T RepID=C4KAG8_THASP Length = 330 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 105/225 (46%), Gaps = 29/225 (12%) Query: 139 KPVSTQTKAKHLAMIKAILRAAERDWKW-LEKA-PVIKIPAVRNKRVRWLEK-EEAKRLI 195 K VS T + LA+I ++L A R+W + +E A I+ P R R L EEA+ L Sbjct: 115 KTVSAGTVLRDLALISSVLNHARREWGFPVENAVQAIRKPRQPQGRERVLSHDEEARLLA 174 Query: 196 DECP----EP-LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVA 250 P P L+ ++ AL T +R+ ++ L W+ + + +R A + P+ R + V Sbjct: 175 ASAPIGRRSPWLQPIIILALETAMRRGELLALRWEHVSLDKRTALL-PDTKNGTRRL-VP 232 Query: 251 LNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIED 310 L+ A L+ VF S PA+ + AC RAGI+ Sbjct: 233 LSPRAIDTLKHMPRAIDGRVF----------PISEPAL-------HLRFKLACDRAGIDG 275 Query: 311 FRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPN 355 FHDLRHT + L + L+ L + G +S++M++RY H PN Sbjct: 276 LHFHDLRHTATTRLAEKLTNLAELSAVTGHKSLQMLKRYYH--PN 318 >UniRef50_Q3SHX2 Site-specific recombinase, phage integrase family n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SHX2_THIDA Length = 352 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 68/238 (28%), Positives = 114/238 (47%), Gaps = 24/238 (10%) Query: 141 VSTQTKAKHLAMIKAILRAAERDWK-WLEKAPVIKI--PAVRNKRVRWLEKEEAKRLIDE 197 +S T K + ++ ++ A ++W L P + P +N R R L+ EE K L+ Sbjct: 117 LSASTVKKEINLLSKLIDLAGKEWGVALPANPCAMVSRPVEKNARDRRLQPEEEKYLLTA 176 Query: 198 CPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVA---WVNPEESKSNRAI-GVALND 253 C + + + +FAL T R ++ L W +D +RV ++ +KS A+ V L+ Sbjct: 177 CEQHVALLSRFALETAARLGELLALRWADVDTTKRVMVIRGIDERGTKSGDALRAVPLSP 236 Query: 254 TACKVLRDQIGKHHKW----VFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIE 309 A VL D++ K + VF KA+ T A+ + + S+++ C +AG E Sbjct: 237 AAVSVL-DELKKLPRGIDGRVFYWWKASDSFSKTWGRALTR----AHASYIADCEKAGGE 291 Query: 310 -------DFRFHDLRHTWASWLIQSGVPLSV-LQEMGGWESIEMVRRYAHLAPNHLTE 359 D RFHDLRH S L + GV S+ + + G +++ M++RY HL L + Sbjct: 292 PDQAFLIDLRFHDLRHEATSRLFEKGVFDSMEVASITGHKTLAMLKRYTHLRAEDLAK 349 >UniRef50_D1WVW4 Integrase family protein n=1 Tax=Streptomyces sp. ACT-1 RepID=D1WVW4_9ACTO Length = 328 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 60/222 (27%), Positives = 102/222 (45%), Gaps = 20/222 (9%) Query: 152 MIKAILRAAERDWKWLEKAPV--IKIPAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFA 209 ++ +I+RAA D + +P I +P + K +W ++A+ ++DE P P +++ Sbjct: 89 LLSSIMRAAVDD-DVIAVSPCRNIDLPQIAIKPPQWFTLDQAQSIVDELPAPWRTMCLLG 147 Query: 210 LATGLRKSNIINLEWQQIDMQRRVAWV-----------NPEESKSNRAIGVALNDTACKV 258 TGLR + +L +ID +R +V P+ S+S R + + + Sbjct: 148 FYTGLRWGELASLHRHRIDQRRSCLFVVEVNTKSSIKEYPKSSRSRREVPLPPHVLDALE 207 Query: 259 LRDQIGKHHKWVFVHTKAAKRA-----DGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRF 313 + H VF T A RA DG I++ + + + + + Sbjct: 208 RHIHLLDHDALVFT-TIAKGRAGRRLDDGNWRRQTWWPAIENAHYFDADGEQLPVPHYPP 266 Query: 314 HDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPN 355 H +RHT ASWL+Q GV L +Q + G ES + +RYAHL P+ Sbjct: 267 HSMRHTCASWLVQKGVSLYEVQHLLGHESFQTTQRYAHLQPD 308 >UniRef50_Q2STX2 Site-specific recombinase, phage integrase family n=1 Tax=Burkholderia thailandensis E264 RepID=Q2STX2_BURTA Length = 222 Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 62/224 (27%), Positives = 98/224 (43%), Gaps = 26/224 (11%) Query: 141 VSTQTKAKHLAMIKAILRAAERDW-KWLEKAPV--IKIPAVRNKRVRWLEKEEAKRLIDE 197 VS+ T + L ++ + A R+W L PV I+ P R R L E LI Sbjct: 13 VSSGTALRELQLLGHVFSVAIREWGAQLPSNPVSLIRKPRSGKARDRVLTTSERTALISA 72 Query: 198 CPEP----LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALND 253 C + +K VV FAL T R+ I+ L WQ +D+ RR A + ++ R I ++ Sbjct: 73 CSQCHNPWIKPVVIFALETAARRGEILALTWQDVDLARRTATLQITKAGQPRRIPLS--- 129 Query: 254 TACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRF 313 C + + + + DG P + K ++ A RAGI +F F Sbjct: 130 ATCVTMLEAL-------------PRSLDGRVFPVSME---TVKQAYERAVARAGITNFTF 173 Query: 314 HDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHL 357 HDLRH + L + G+ + L+ + G + M++RY + L Sbjct: 174 HDLRHDALTRLAKQGLSILELRAISGHATANMLQRYVSIDAGEL 217 >UniRef50_C4KVM9 Site-specific recombinase, phage integrase family n=8 Tax=Burkholderiales RepID=C4KVM9_BURPS Length = 339 Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 64/226 (28%), Positives = 107/226 (47%), Gaps = 22/226 (9%) Query: 139 KPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKI--PAVRNKRVRWLEKEEAKRLID 196 K VS QT L ++ +L A R+W + A V K+ P R R L +E + +ID Sbjct: 114 KEVSPQTVVHELNLLNRVLTLATREWGIVLPAGVPKVIKPRKPQGRDRRLHPDEIQAIID 173 Query: 197 ECPE-PLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTA 255 L+ ++ A+ATG+R+ + +L W+ ID+ RR A + ++ S R V L+ A Sbjct: 174 ATESLDLRDFIRLAVATGMRRGELASLRWESIDLARRTAHLPVTKTDSPRT--VPLSTDA 231 Query: 256 CKVLRD-QIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDS--------KTSWLSACRRA 306 +L ++ + V + A RA + RK+ + + ++WL Sbjct: 232 VTILHARRVAQCVAPFNVTSDALTRAFCRAVQRARKLYVSTCAVLDRPIDSNWL-----I 286 Query: 307 GIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHL 352 GI R HDLRH S L + G+ + + G +++ M++RY HL Sbjct: 287 GI---RLHDLRHEATSRLFEKGLNPMEVASITGHKTLSMLQRYTHL 329 >UniRef50_C9CXZ5 Phage integrase n=1 Tax=Silicibacter sp. TrichCH4B RepID=C9CXZ5_9RHOB Length = 391 Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 91/353 (25%), Positives = 144/353 (40%), Gaps = 57/353 (16%) Query: 48 VEKLGDLP-----DVTFEEACL--RWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISE 100 + G++P ++ E A + R + ++DK S ++ W FE +K + Sbjct: 61 IGNYGEIPLETARNIALECAAMVARGQDPQSDKIKKREAPSLVDLW-GRFEESDMKRLKP 119 Query: 101 AKIYSAVSRMHN--------RKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAM 152 A I S N R+ +I + V R + P + ++ +K LA Sbjct: 120 ATIRDYRSLWKNILEPALGKRRVADISRADVDRLHRSMSDTPYQANRSIAVLSKMMTLAE 179 Query: 153 IKAILRAAERDWKWLEKA--PVIKIPAVR-NKRVRWLEKEEAKRLIDECPE--------- 200 I W+W ++ P + R KR R+L EE +RL Sbjct: 180 I----------WEWRDQGTNPCRYVTRHREGKRERYLSTEELERLGAALTNLVDLGLLWP 229 Query: 201 PLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLR 260 + ++ + L G R+S I N EW ID +RR+ + +SK+ A + L++ A VL+ Sbjct: 230 DMANLFRLLLLVGARRSEISNCEWNWIDWERRI--IALPDSKTG-AKPLFLSNEAITVLQ 286 Query: 261 DQ-IGKHH---KWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDL 316 +Q I H K+VF KA K S P W C A +E+ R HDL Sbjct: 287 NQKITTRHQSSKFVFPGAKANKAIVNLSKP------------WKLICEEAELENLRIHDL 334 Query: 317 RHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIFG 369 RHT AS + GV L ++ + G + RYAH+ + + A I G Sbjct: 335 RHTAASIAVGQGVALPIIGRLLGHTQTQTTARYAHVDADPALKAANAIGQAIG 387 >UniRef50_Q2W8W7 Integrase n=2 Tax=Magnetospirillum RepID=Q2W8W7_MAGSA Length = 359 Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/209 (25%), Positives = 103/209 (49%), Gaps = 34/209 (16%) Query: 171 PVIKI-----PAVRNKRVRWLE------KEEAKRLIDECPEP----LKSVVKFALATGLR 215 PV+K+ P R++R+ +E + EA+ LI C + ++ V+FAL +R Sbjct: 162 PVLKLILPPLPEGRDRRLNVIEHDDGTVRNEAEALIGACADAVNPWIRPAVEFALDGAMR 221 Query: 216 KSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTK 275 ++ I+ + W+ +D+ + + +K+ + VAL+ +VLR Sbjct: 222 RNEIVQMRWEHVDLNAGMVRLPAAITKTGVSRDVALSPAGVQVLR--------------T 267 Query: 276 AAKRADGTSTPAVRKMRIDS-KTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVL 334 + DG P + D+ +++ A +RAG++D FHDLRH AS L + G+ L + Sbjct: 268 LPRSIDGRVFP----LTADALYRAFVRARKRAGLDDLHFHDLRHEAASRLREEGLDLMEI 323 Query: 335 QEMGGWESIEMVRRYAHLAPNHLTEHARK 363 + G ++++M++RY H+ + E +K Sbjct: 324 ASITGHKTLQMLKRYVHVKAKDVVEKRQK 352 >UniRef50_Q3Z6H5 Site-specific recombinase, phage integrase family n=1 Tax=Dehalococcoides ethenogenes 195 RepID=Q3Z6H5_DEHE1 Length = 386 Score = 74.7 bits (182), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 62/254 (24%), Positives = 108/254 (42%), Gaps = 48/254 (18%) Query: 149 HLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKRVRWLEKEEAKRLIDECPE-PLKSVVK 207 H+ + KA+ A + A + P ++ ++ + + + + L+++ E P ++ Sbjct: 135 HVVLHKALKNAVKTGLLSRNIAEAVDAPKIQRHEMQVMNESDMQVLLEKAKETPYYALFY 194 Query: 208 FALATGLRKSNIINLEWQQI-------------------DMQRRVAWVNPEESKSNRAIG 248 +L TG+R++ + L W I D+ +R+ + P+ SKS R I Sbjct: 195 TSLFTGMRRAECLALRWSDIDLILCQVYVLRSMQYVQDADLGKRITFKEPKTSKSRRQI- 253 Query: 249 VALNDTACKVLRDQIGKHHK--------------WVFVHTKAAKRADGTSTPAVRKMRID 294 AL+ + +LR+ + VF H + + T A Sbjct: 254 -ALSPSNVIILREHYQDQSELRKTLNLPGLTDSDLVFSHYDGSPLLPNSVTHA------- 305 Query: 295 SKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEM-VRRYAHLA 353 W+ RR G+ R HD RHT AS L++ GV ++QE G SI++ + Y+H+A Sbjct: 306 ----WIKLARRCGLNGIRLHDARHTHASLLLKQGVHPKIVQERLGHGSIQITLDTYSHVA 361 Query: 354 PNHLTEHARKIDDI 367 P A K DDI Sbjct: 362 PGLQQAAASKFDDI 375 >UniRef50_Q30Q21 Phage integrase n=1 Tax=Sulfurimonas denitrificans DSM 1251 RepID=Q30Q21_SULDN Length = 368 Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 77/311 (24%), Positives = 140/311 (45%), Gaps = 45/311 (14%) Query: 57 VTFEEACLRWLE-EKADKKSLDSDKSRIEFWLEHFE-GIRLKDISEAKIYSAVSRMHNRK 114 TFE+A L + E K +KK+ SD+ +++ H KDI K K Sbjct: 82 FTFEDAWLAYYEWAKVNKKTYISDE---QYYRLHIAPTFANKDIKSIK----------SK 128 Query: 115 TKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAA-ERDWKWLEKAPV- 172 E +KQ +Y K + Q+ ++ +++ I+ A + D P+ Sbjct: 129 DIEQFKQ-------------LYTSKGYAAQSVKHYIGLMRHIINYAIKNDLIKNYANPIS 175 Query: 173 ---IKIPAVRNKRVRWLEKEEAKRLIDECPE----PLKSVVKFALATGLRKSNIINLEWQ 225 +K+P + N R +L KE+A+ ++DE + L + L TG R S + +L W Sbjct: 176 GGKVKLPTIDNARQAFLSKEQARVILDELLQYENPQLYQLTILLLYTGARFSEVASLTWN 235 Query: 226 QIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRD-QIGKHHKWVFVHTKAAKRADGTS 284 I+ + + + + +K+ A V +N+ +V+ + K++ + +TK + Sbjct: 236 NINFETNMIYF--KATKNGNARWVFMNELVKEVIEQLKADKNNNLIIANTKGKQMERMLH 293 Query: 285 TPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIE 344 + + I + A +R + H LRHT ASWL +G+ + ++E G +++E Sbjct: 294 SWQIVVDNIIDENKEADAKQRVTV-----HSLRHTHASWLAMAGLDILHIKEQLGHKTLE 348 Query: 345 MVRRYAHLAPN 355 M RY+HL PN Sbjct: 349 MTMRYSHLIPN 359 >UniRef50_Q30VV4 Site-specific recombinase, phage integrase family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30VV4_DESDG Length = 407 Score = 74.3 bits (181), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 90/192 (46%), Gaps = 20/192 (10%) Query: 173 IKIPAVRNKRVRWLEKEEAKRLIDEC---PEPLKSVVKFALATGLRKSNIINLEWQQIDM 229 +K+PA NKR R+L+ E L+ + + +L GLR I NL W+ +D+ Sbjct: 220 LKLPARDNKRQRYLKPAEIDTLLSALRDKSQKTHDIALLSLECGLRFGEIANLRWEDVDL 279 Query: 230 QRRVAWVNPEESKSNRAIGVALNDTA-CKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAV 288 + ++ +S+ NR +N T +L ++ + +F D P Sbjct: 280 EHERLFIRDPKSRRNRF--TYINQTIRSMLLLNRPDRAGDLIF--------PDYEGKPMA 329 Query: 289 RKMRIDSKTSWLSACRRAGIEDFR----FHDLRHTWASWLIQSGVPLSVLQEMGGWESIE 344 R + + + + + D R FH LRHT+AS L+ +G PL ++E+ G S+ Sbjct: 330 RVSKTFGRVA--DELFNSDVTDTRNRVCFHTLRHTFASRLVANGTPLYNVKELLGHSSLA 387 Query: 345 MVRRYAHLAPNH 356 M RYAHLAP++ Sbjct: 388 MTERYAHLAPDY 399 >UniRef50_A3NCI9 Phage integrase n=6 Tax=Burkholderia RepID=A3NCI9_BURP6 Length = 381 Score = 74.3 bits (181), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 100/410 (24%), Positives = 179/410 (43%), Gaps = 79/410 (19%) Query: 1 MSLFRRNEI--WYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 M+L RRN WY + + G K+ S GT +K +A ++ + + + LGD +T Sbjct: 1 MTLIRRNNSKNWYYQFQIQG-KKFFGSTGTPNKTKAAQVEREMRNRAHAEQYLGDAQPIT 59 Query: 59 FEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKI--YSAV--SRMHNRK 114 ++A +++E ++D + S + L G +L ++AK+ Y + + +H Sbjct: 60 LKDALEQYVEARSDTSYHRNMCSIVRKTL----GYKLHPRTKAKLPCYGMLPDTLLHELT 115 Query: 115 TKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKH-LAMIKAILR-AAERDWKWLEKAPV 172 T++ + AA RK + KP + KH + +++A + A+ +K + Sbjct: 116 TRDF---DLLAAKRKAEG-----DKPATI----KHEIGLLRATINEMAKLGFKVSRE--- 160 Query: 173 IKIPAVRNK-RVRWLEKEEAKRLIDEC-PEPLKS---------------------VVKFA 209 I P +R R+R+L+ + L+ E PE L++ + F Sbjct: 161 IVFPELRTSYRLRYLDSNDESALLRELDPERLRARINASKPQTPEMTRNMQDNYDITVFL 220 Query: 210 LATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLR---DQIGKH 266 L TG R S + N+ W I++ ++ SK + + +LR ++ Sbjct: 221 LDTGCRYSEVANIPWSAINLD--TCTISLYRSKVRNEDVLHMTSRLEAILRRRWEERRTG 278 Query: 267 HKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIED----------FRFHDL 316 ++VF +R G ST +++K A RAG+ D H L Sbjct: 279 QRYVFEDRTGNER--GYSTKSIKK-----------AIERAGLNDPVLVKERGGRVTLHTL 325 Query: 317 RHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDD 366 RHT+AS L+++GV L + + G +M +RYAHL+PN + A K+ D Sbjct: 326 RHTFASKLVKAGVSLYEVSVLLGHSDPKMTQRYAHLSPNDASRKAVKVID 375 >UniRef50_C4XJ44 Site-specific recombinase n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XJ44_DESMR Length = 411 Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 88/188 (46%), Gaps = 24/188 (12%) Query: 173 IKIPAVRNKRVRWLEKEEAKRLIDECP---EPLKSVVKFALATGLRKSNIINLEWQQIDM 229 + IP N R+R L EE + L+ E + + FAL TG R S L W+ +D Sbjct: 201 LDIPKPVNTRLRVLTPEEIQALLAELATVDQTAHDLTVFALLTGCRASEAFKLRWENVDF 260 Query: 230 QRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVR 289 R A +++ R + +A D + R G+ ++VF + DGT A Sbjct: 261 VREAALFPETKNREPREVFLA-ADVLDMLKRRGPGRPGEYVFT------KRDGTPYDA-- 311 Query: 290 KMRIDSKTSWLSACRRAGIEDFR-------FHDLRHTWASWLIQSGVPLSVLQEMGGWES 342 + +S+ +A R G + R FH+LRH+ A++ + GVP+ +Q + GW++ Sbjct: 312 -----APSSFKTALERLGFNEGRALRDRATFHNLRHSAATYAARRGVPVKDMQTIFGWKT 366 Query: 343 IEMVRRYA 350 MV RYA Sbjct: 367 PSMVFRYA 374 >UniRef50_B8IHP1 Integrase family protein n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IHP1_METNO Length = 327 Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 57/193 (29%), Positives = 88/193 (45%), Gaps = 7/193 (3%) Query: 166 WLEKAPVIKIPAVR----NKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIIN 221 WL + P + +R +R+R + +E R+++ + +F +ATG R S + Sbjct: 100 WLYQIPYPRWGDLRLSEPQERIREADPDEEHRIVEALGPDYGRLFRFMMATGTRASGAL- 158 Query: 222 LEWQQIDMQRRVAWV-NPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRA 280 L W QID + RVA + N + R + L + +L + G H VF +T A R Sbjct: 159 LTWPQIDRRNRVARIRNKAKDGQARWYTIPLTNACLAILDECKGHHPIAVFTYTVARTRD 218 Query: 281 DGTSTPAVRKMRIDSKTSWLSACRRAGI-EDFRFHDLRHTWASWLIQSGVPLSVLQEMGG 339 T + KT W R AG+ E FR HD RHT + +++ L Q++ G Sbjct: 219 GRTKGERLPITDNGFKTHWRRCIREAGLAEGFRRHDTRHTAGTRYVRATGNLKGAQKLLG 278 Query: 340 WESIEMVRRYAHL 352 IE RYAH+ Sbjct: 279 HSRIETTTRYAHV 291 >UniRef50_C7I1A8 Integrase family protein n=1 Tax=Thiomonas intermedia K12 RepID=C7I1A8_THIIN Length = 340 Score = 73.9 bits (180), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 89/325 (27%), Positives = 132/325 (40%), Gaps = 70/325 (21%) Query: 57 VTFEEACLR--WLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRK 114 VTF + CLR +E KK D+++SRI F LEH + R Sbjct: 58 VTFSD-CLRRYAVEVSEQKKGADAERSRIVFLLEH-------------------PLSKRA 97 Query: 115 TKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKW-LEKAPVI 173 ++ + V A + + L P V + LA+I + A R+W L P+ Sbjct: 98 IGDL--RPVDFARHRDERLAAVSPASVRLE-----LALISHLFSVAIREWGLGLSSNPIQ 150 Query: 174 KI--PAVRNKRVRWLEKEEAKRL---IDE-CP-----------EP---LKSVVKFALATG 213 +I P V+N R R L +E +RL ID C P K +V AL T Sbjct: 151 QISKPKVQNARDRRLAGDEEERLFAAIDAICAIRTPRANRAAVHPAMWFKQIVILALETA 210 Query: 214 LRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVH 273 +R+ ++ W + R ++ ++K+ A V L+ A + Sbjct: 211 MRQGELLEATWDNLHANERYLFL--PDTKNGTARSVPLSHIALDAI-------------- 254 Query: 274 TKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSV 333 + +R D T V + K W A R A IEDF FHDLRH S L + +P+ Sbjct: 255 -LSVERTDDTRIFPVSAFAV--KNYWEKALRLAAIEDFHFHDLRHEATSRLARK-LPMHD 310 Query: 334 LQEMGGWESIEMVRRYAHLAPNHLT 358 L ++ G +S M+ RY H P L Sbjct: 311 LMKVTGHKSSAMLARYYHPVPADLA 335 >UniRef50_P06723 Integrase n=52 Tax=root RepID=VINT_BP186 Length = 336 Score = 73.9 bits (180), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 89/330 (26%), Positives = 149/330 (45%), Gaps = 55/330 (16%) Query: 57 VTFEEACLR--WLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDI--SEAKIYSAVSRMHN 112 + FE+ ++ W EEK D+++L K ++ W GI LKD + ++ A M Sbjct: 36 LAFEQYTVQNPWQEEKEDRRTL---KELVDSWYSA-HGITLKDGLKRQLAMHHAFECMGE 91 Query: 113 RKTKEIWKQ---KVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEK 169 ++ Q + + KG+ K VS +T LA +A+ R +W + Sbjct: 92 PLARDFDAQMFSRYREKRLKGEYARSNRVKEVSPRTLNLELAYFRAVFNELNRLGEWKGE 151 Query: 170 APVIKIPAVRNKRVR--WLEKEEAKRLIDEC-----PEPLKSVVKFALATGLRKSNIINL 222 P+ + R + + WL ++ +L+ EC P+ L++VV+ LATG R S +L Sbjct: 152 NPLKNMRPFRTEEMEMTWLTHDQISQLLGECNRHDHPD-LETVVRICLATGARWSEAESL 210 Query: 223 EWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADG 282 Q+ + ++ + N + + NR + ++ K L + Sbjct: 211 RKSQL-AKYKITYTNTK-GRKNRTVPIS------KELYE--------------------- 241 Query: 283 TSTPAVRKMRI--DSKTSWLSACRRAGIE---DFRFHDLRHTWASWLIQSGVPLSVLQEM 337 S P +K R+ D ++ SA R GIE H LRHT+AS + +G + VLQ + Sbjct: 242 -SLPDDKKGRLFSDCYGAFRSALERTGIELPAGQLTHVLRHTFASHFMMNGGNILVLQRV 300 Query: 338 GGWESIEMVRRYAHLAPNHLTEHARKIDDI 367 G I+M RYAH AP+HL E A K++ + Sbjct: 301 LGHTDIKMTMRYAHFAPDHL-EDAVKLNPL 329 >UniRef50_A4ISA3 Integrase, phage-related protein n=11 Tax=root RepID=A4ISA3_GEOTN Length = 378 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 87/378 (23%), Positives = 160/378 (42%), Gaps = 105/378 (27%) Query: 56 DVTFEEACLRWLE-EKADKKSLDSDKS---RIEFWLEHFEGIRLKDISEAKIYSAVSRMH 111 D F E W E K K S + DK+ ++ E+F G+++K+++ M+ Sbjct: 59 DQLFPEYMRNWFELYKKGKHSPEHDKNVEYSVQLVEEYFAGVKMKELTRD--------MY 110 Query: 112 NRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAP 171 + EI + + +T+T K IK ++AA +E+ Sbjct: 111 QKFINEIAETR-------------------TTETVKKRHTYIKECIKAA------IEEGV 145 Query: 172 VIKIPAVR----------NKRVRWLEKEEAKRLIDECPEPLKS------VVKFALATGLR 215 +I+ P + ++ +++L +EAK+LI E + ++S ++ FALATG R Sbjct: 146 IIRDPTYKVVVKGKKKGKDEELKYLNYQEAKQLIAEIKKDMRSKYISRYIILFALATGAR 205 Query: 216 KSNIINLEWQQIDMQRRVAWVN-------------PEESKSNRAIGVALNDTACKVLRD- 261 S I+ L W ID + R+ +N + S R I + ++ CK+L++ Sbjct: 206 FSEILGLTWDCIDFKNRMVTINKTWDYKFTNDFADTKTYSSKRTIKI--DEDTCKILKEL 263 Query: 262 -----------QIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIED 310 + VFV+TK + S AV K + + CR+ G+++ Sbjct: 264 RKAQNEVAMKTGLRNEKNLVFVNTK----MELVSNNAVNK-------TLKTLCRKLGLKE 312 Query: 311 FRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEM-VRRYAHLAPNHLTEHARKIDDIFG 369 H LRHT AS L+ + + + G + I + ++ Y+H+ +D++ Sbjct: 313 VTMHSLRHTHASMLLYRKANIKYISKRLGHKDIGITLQTYSHI-----------LDEL-- 359 Query: 370 DNVPNMSHSEIMEDIKKA 387 + NM +IM+D+ A Sbjct: 360 EQAENMLLDQIMDDLYHA 377 >UniRef50_C5V2X2 Integrase family protein n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V2X2_9PROT Length = 353 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 70/239 (29%), Positives = 111/239 (46%), Gaps = 49/239 (20%) Query: 141 VSTQTKAKHLAMIKAILRAAE-RDWKWLEKAPVIKI-----PAVRNKRVRWLEKEEAKRL 194 VS T + ++ A+ AA+ + W + PV I P ++RVR L EE RL Sbjct: 127 VSEATIRLEVMLLSAVFEAAKSKRWNYCRTNPVRDIDQDARPGKSSERVRRLVGEEESRL 186 Query: 195 IDECPEPLKS-----VVKFALATGLRKSNIIN------------LEWQQIDMQRRVAWVN 237 + + ++ VV+ A+AT R+S II L W+ +++ +R A + Sbjct: 187 LAALDKRCRNADIPLVVRLAIATAARQSEIIGKDSTSTRPASPGLCWENVNLAQRSAKLI 246 Query: 238 PEESKSNRAIGVALNDTACKVL----RDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRI 293 ++ +R I + D+A +L R G VF T+ DG +R Sbjct: 247 DTKNGKDRIIPIG--DSALALLSALPRPITGGR---VFKVTQ-----DGL----IR---- 288 Query: 294 DSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHL 352 S+ +AC A IED FHDLRH S ++++G+ L +Q + G + EMV+RY HL Sbjct: 289 ----SFAAACVDAKIEDLTFHDLRHEATSRMVEAGLSLLEVQSVTGHSNAEMVKRYTHL 343 >UniRef50_Q479U8 Phage integrase n=1 Tax=Dechloromonas aromatica RCB RepID=Q479U8_DECAR Length = 340 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 59/222 (26%), Positives = 104/222 (46%), Gaps = 18/222 (8%) Query: 141 VSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKIPAVRNKRVRWLEKEEAKRLIDEC 198 V+ T L +I A + A R+W PV IK P +R R + + E + +I Sbjct: 117 VADATARHELNIISAAYKVAAREWGIPVSNPVSQIKRPPAGRERKRRISQAEIEAIIQHS 176 Query: 199 -PEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACK 257 L + A+ TG+R+ II L WQ IDM RR+A+++ ++ +R V L+ A Sbjct: 177 KTRELPDFLCLAVTTGMRRGEIIRLRWQDIDMGRRLAYLSDTKNGEDRV--VPLSSEALA 234 Query: 258 VLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIE-------D 310 VL+ + +F + G S A+RK + ++ ++ + AG++ D Sbjct: 235 VLQAMPRRFDGRLF-----SLEPRGFSK-AMRKSVVRARRAYEAESSLAGVQPDPEFLCD 288 Query: 311 FRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHL 352 R HD RH S + G+ + + + G +++ ++RY H+ Sbjct: 289 LRLHDARHEAVSAFFERGLDVMEVASISGHKTLSCLKRYTHM 330 >UniRef50_A1V9J7 Phage integrase family protein n=1 Tax=Desulfovibrio vulgaris DP4 RepID=A1V9J7_DESVV Length = 400 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/213 (29%), Positives = 102/213 (47%), Gaps = 28/213 (13%) Query: 137 EPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAP-----VIKIPAVRNKRVRWLEKEEA 191 E + +S Q+ LA+++ +LR E + L P + +P V N + L E+A Sbjct: 148 EAQGMSPQSVKHVLALLRRVLRYCE--GRGLCSLPGRALLIFDLPPVDNAKTENLTHEQA 205 Query: 192 KRLI---DECPEP-LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAI 247 + L+ D P+ L ++V+ AL TG+R+ + L+W +D + + +KS + Sbjct: 206 RALLEALDADPDQNLAAMVRLALLTGMRRGALFGLQWGDLDFRNARITLRGATAKSGKTS 265 Query: 248 GVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACR-RA 306 + + D A KVL +VF KR + R+ +L+ R RA Sbjct: 266 SIPMTDDARKVLLGVQRTESLYVFPGRNGGKRVE------CRR--------FLNRIRLRA 311 Query: 307 GIED-FR-FHDLRHTWASWLIQSGVPLSVLQEM 337 G+ D FR H LRHT+ASWL SGV L ++++ Sbjct: 312 GLPDGFRPLHGLRHTFASWLASSGVSLLQIKDL 344 >UniRef50_B8FGB9 Integrase family protein n=2 Tax=Desulfobacteraceae RepID=B8FGB9_DESAA Length = 373 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 81/354 (22%), Positives = 152/354 (42%), Gaps = 41/354 (11%) Query: 2 SLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEE 61 +L+ R + W+ Y G+ ++ES G+ K A+EL KR+A++ G P V FE+ Sbjct: 3 TLYLRGKTWWIKY-YHNGEMVRESSGSAKKMIAKELLAKREADI----AYGRTPGVHFEK 57 Query: 62 ACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQ 121 + L E +L + + + ++ A + RK K + + Sbjct: 58 VLFKDLAED---------------FLRDYRINKKRSLARADLCV-------RKLKRSFGR 95 Query: 122 KVQAAI---RKGKELPVYEPKPVSTQTKAKHLAMIKAILR-AAERDWKWLEKAPVIKIPA 177 AI R + + + + + T + L+ +K +L AE+ +++ P IK+ Sbjct: 96 DSVPAITTPRINQYIEMRMEEGAANATINRELSALKRMLNLGAEQTPPLVDRVPKIKMLQ 155 Query: 178 VRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVN 237 N R + E +E + D P+ L+ V F G R I L W Q+D R A + Sbjct: 156 EDNVRTGFFEHDEFLGVRDALPDYLQGFVTFGYKYGWRFQEIAGLTWAQVDRDRWTARLE 215 Query: 238 PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFV--HTKAAKRADGTSTPAVRKMRIDS 295 +K+ V L+ ++ + Q + K + + + +R G ++ Sbjct: 216 VGTTKNKAGRMVFLDPELIEIFKTQWKQRSKHINILPYVFPNRRHTGKI--------VEI 267 Query: 296 KTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRY 349 + +W +A + AG+ FHDLR T ++++GVP +V + G ++ + RY Sbjct: 268 RFAWKNALKEAGVSYKLFHDLRRTAVRNMVRAGVPENVAMRVSGHKTRAVFDRY 321 >UniRef50_A6GBT9 Phage integrase n=2 Tax=Plesiocystis pacifica SIR-1 RepID=A6GBT9_9DELT Length = 531 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 70/234 (29%), Positives = 108/234 (46%), Gaps = 24/234 (10%) Query: 139 KPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKRV-RWLEKEEAKRLIDE 197 KP+S T A HLA+++ +L+ A R W+ +++ P I+ P R V +L K EA+ L++ Sbjct: 236 KPLSASTIANHLAVLRRMLKVAHR-WELIDRVPDIQPP--RKGTVDNYLSKREAQALLEH 292 Query: 198 CPEPLKSVVKFALATGLRKSNIINLEWQQIDM---------QR-RVAWVNPEESKSNRAI 247 + + AL TG+R + L +D+ QR + V P + R + Sbjct: 293 ADPLTRDLFMLALRTGMRLGELRELRTGDVDLANGRIQVRRQRTQEGEVTPPKYGRKRTV 352 Query: 248 GVALNDTACKVLRDQIGK--HHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRR 305 V + A +VLR ++ + VF K K A A + S +A R Sbjct: 353 QVPAD--ALEVLRKRLAGLGRKELVFSKPKGYKAAH-RGERAAKGGEPWSHKDLFNAVNR 409 Query: 306 A----GIE-DFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAP 354 A GIE H LRHT+A+ + +GVPLS++ G + RYAH AP Sbjct: 410 ARAGAGIERSVGVHTLRHTFATHAVAAGVPLSLVSRQLGHSDVRTTMRYAHHAP 463 >UniRef50_B8KTC0 Site-specific recombinase, phage integrase family n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KTC0_9GAMM Length = 296 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 74/309 (23%), Positives = 127/309 (41%), Gaps = 43/309 (13%) Query: 57 VTFEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTK 116 TF++ W+ A ++ RI+FW+E F + I+E + A+ R+ R Sbjct: 2 TTFQDVAEAWI---ASREHCVGSLGRIQFWVEEFGDQPIDAITEDAVDQALVRLAKRGKL 58 Query: 117 EIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAER----------DWKW 166 + + + A+ GK P++ T + ++ + I + A R + Sbjct: 59 KAGRGSARRAVPTGK--------PLAGSTINRFISTLSGIFKYARRVRALPRSHTPPTRG 110 Query: 167 LEKAPVIKIPAVRNKRVRWLEKEE---AKRLIDECPEPLKSVVKFALATGLRKSNIINLE 223 +EKAP P K R E ++ R++D+ L +++ TGLR N+++L+ Sbjct: 111 IEKAPE---PVDPEKYFRPEEVDKLMAVARVVDQKWRKLPALIILGFHTGLRVGNLLDLK 167 Query: 224 WQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRD-QIGKHHKWVFVHTKAAKRADG 282 W+ +D+ R V +K+ R AL D L+ G VF R+ Sbjct: 168 WEDVDLDERTLSV--ATTKNGRPHIAALTDRCITELQKLPAGSPSDLVF-------RSYR 218 Query: 283 TSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWES 342 T P + + W C AG E FH LRH S L +GV + + ++ G + Sbjct: 219 TDKP------FNYRDLWQKVCDEAGFEGRTFHWLRHGCGSALASAGVSQAQIMQVMGHRT 272 Query: 343 IEMVRRYAH 351 + RY H Sbjct: 273 LVASARYMH 281 >UniRef50_A9D4N1 Putative uncharacterized protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D4N1_9RHIZ Length = 366 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 73/272 (26%), Positives = 120/272 (44%), Gaps = 28/272 (10%) Query: 112 NRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAP 171 NR + Q V A + + P V+ A+ ++AI+ A RD W E P Sbjct: 98 NRLLASLTNQDVSAMV-AARRADGVSPATVNRTATAR----LRAIITRA-RD-AWDEPVP 150 Query: 172 VIK----IPAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQI 227 I + R + +R L EE L +V+F++ +G R + + LEW+ I Sbjct: 151 RIAWKNHLLRERQEVLRELSAEEETALFARLAPGYAELVRFSMLSGCRMAECLGLEWRLI 210 Query: 228 DMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVH-----TKAAKRADG 282 D + + K+ V L+D A + L + + H VF H + KR D Sbjct: 211 DWHGGYIVITGKGDKTRH---VPLSD-ALRALLWPLPRAHARVFTHRIRRGSIHHKRGD- 265 Query: 283 TSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWES 342 V + ++S + C++AG+ FRFHDLRHT+A+ +++ + LQ + G S Sbjct: 266 --IAPVEEEALNSH--FARVCKKAGVIGFRFHDLRHTFATRFLRATGDMRALQLILGHSS 321 Query: 343 IEMVRRYAHLAPNHLTEHARKIDDIFGDNVPN 374 IE RYAH+ + R++D + +P Sbjct: 322 IETTMRYAHVTA---ADAKRRMDAMSATKIPT 350 >UniRef50_A1VU89 Phage integrase family protein n=2 Tax=Burkholderiales RepID=A1VU89_POLNA Length = 327 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/221 (26%), Positives = 102/221 (46%), Gaps = 27/221 (12%) Query: 139 KPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKIPAVRNKRVRWLEKEEAKRLID 196 K T + LA++ +I+ A R+W++ + P+ I+ P + R R L + + L+ Sbjct: 115 KSCQPSTVVRDLAVLSSIINHARREWRFPIQNPIEMIRKPTMPPGRDRVLSRTDEVTLLT 174 Query: 197 EC-P----EPL-KSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVA 250 E P PL + +V A+ T +R+ I+ L W+ +D+ ++ ++ +K+ ++ V Sbjct: 175 ELLPTGRRNPLMQPIVVIAIETAMRRGEILGLRWEHVDLDQQTVFL--PITKNGKSRYVP 232 Query: 251 LNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIED 310 L+ A + LR VF AA A+ +L A RR + D Sbjct: 233 LSKRAVETLRTVDRSIDGRVFPIGMAAMEAN-----------------FLKAVRRGNLGD 275 Query: 311 FRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAH 351 FHDLRHT S + + L + G S++M++RY H Sbjct: 276 LHFHDLRHTGTSRMANKLPNVIELAAVTGHTSLQMLKRYYH 316 >UniRef50_A2SK62 Putative uncharacterized protein n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SK62_METPP Length = 212 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 83/179 (46%), Gaps = 5/179 (2%) Query: 193 RLIDECPEPLKSVVKFALATGLRKSNIINLEWQ----QIDMQRRVAWVNPEESKSNRAIG 248 +L+ + P L+ + F+L TG R N+ L W ++ R V V KS R Sbjct: 21 QLLPKLPGHLQRMALFSLNTGARDENVCGLRWDWEVPVPEVGRSVFVVPATAFKSKRPHV 80 Query: 249 VALNDTACKVLRDQIGKHHKWVFVHTKA-AKRADGTSTPAVRKMRIDSKTSWLSACRRAG 307 + LND A ++ Q GKH ++VFV+ + K D R++ + T++ +A AG Sbjct: 81 LVLNDVAWSLVEGQRGKHKEFVFVYRRERVKHIDIEPAMKYRRVGTINNTAFQAARTEAG 140 Query: 308 IEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDD 366 + R HD RHT+A L +GVP + G M + YA L E A K+ + Sbjct: 141 LPQVRVHDFRHTFAQRLRDAGVPEEDRALLLGHAVAGMAQHYATSTVERLIEVANKVSE 199 >UniRef50_Q1RJE3 Integrase n=9 Tax=Rickettsia RepID=Q1RJE3_RICBR Length = 388 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 81/336 (24%), Positives = 146/336 (43%), Gaps = 45/336 (13%) Query: 50 KLGDLPDVTFEEACLRWLEEKA----------DKKSLDSDKSRIEFW---LEHFEGI--- 93 K+G P ++ +A L+ E K +K L + + EF+ L+ + I Sbjct: 65 KIGVFPYLSIIDARLKASELKGKIAQGYNPIEEKARLSKEPTFKEFYDRYLDEYSKINNK 124 Query: 94 RLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMI 153 R KD + A + ++NRK I K +Q K + Y + L ++ Sbjct: 125 RWKDYA-ASVDRYAKHLYNRKISTIQKADIQELFNKLTKTGKYGAN--------RFLEVL 175 Query: 154 KAILRAAERDWKWLEKAPVIKIPAVRNK-RVRWLEKEEAKRLIDECPEPLKSVVK----F 208 + A +W+ L PVI I + + R R+L +EE R E V+K Sbjct: 176 SPVFSKA-IEWELLTVNPVIGIKKHKEQSRDRYLTREEIPRFFTAISEEQNQVMKDFFLI 234 Query: 209 ALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHK 268 AL T +RK N++ + W+QI + ++ ++K+ + L D A ++L+ + + Sbjct: 235 ALYTSVRKDNVLTMRWEQISFADKQLYL--PDTKNGDPHRLPLLDQAVEILKARKEQSDS 292 Query: 269 -WVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQS 327 WVF ++ +S+ ++ + K +W C++AGIE+ R HDLR T SW+ + Sbjct: 293 IWVF-------PSETSSSGHLQ----EPKKAWKRICKKAGIENLRIHDLRRTIPSWMAMT 341 Query: 328 GVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARK 363 G V+ ++ Y LA + E+ ++ Sbjct: 342 GANQYVIGQLLNHRDPRSTAVYTRLATDTAREYMQR 377 >UniRef50_B8FKX9 Integrase family protein n=2 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FKX9_DESAA Length = 408 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 87/360 (24%), Positives = 156/360 (43%), Gaps = 42/360 (11%) Query: 10 WYASYSLPGGKRIKESLG--TKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRWL 67 ++ +Y LPGGK+ +E++G +D R A+ K E RV K +TFE+ +W Sbjct: 38 YWITYRLPGGKQRREAVGFSIEDARAAEGKRKAEKKENPRVLKKSPEETMTFEDLA-KWY 96 Query: 68 EEKADKKSLDSDKSRIEFWL----EHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKV 123 K L S RIE L E F ++K+I+ + + + +K++ Sbjct: 97 LALPKVKGLKS-FWRIEMNLNTFNETFGKTKIKNITALDL----EKFQVDGLAQGFKKRT 151 Query: 124 QAAIRKGKELPVYEPKPVSTQTKAKHLAMI--KAILRAAERDWKWLEKAPVIK-----IP 176 + + + KE +P ++Q + + I RA + D E V + Sbjct: 152 RGSKEEKKEGGASQP---ASQAYIDQILTVARTMINRAFDSDIVSGETVKVFRRVKNLQG 208 Query: 177 AVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWV 236 N R R L +E +R++ P + V+ A TG+R I L W ++D++ RV + Sbjct: 209 GNANARDRVLTHDEFERIMANLPAHARPVIATAYYTGMRSGEIFPLTWDKVDLKERVIRL 268 Query: 237 NPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSK 296 ++K V + C L + + + + + K+ + ++K+R Sbjct: 269 EAADTKDKEPRVVPI----CNELFEVLSGLPRPIHTNNVFLKKGE-----PIKKLR---- 315 Query: 297 TSWLSACRRAGI-------EDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRY 349 S +A ++A I F FHD RHT+ + + ++GVP SV+ ++ G + M RY Sbjct: 316 NSLSTAAKKANIPFGRKVKNGFTFHDFRHTFNTNMRRAGVPESVIMKITGHSTRAMFDRY 375 >UniRef50_Q1QLE5 Phage integrase n=2 Tax=Nitrobacter RepID=Q1QLE5_NITHX Length = 363 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 98/228 (42%), Gaps = 26/228 (11%) Query: 145 TKAKHLAMIKAILRAAERDWKWLEKAP---VIKIPAVRNKRVRWLEKEEAKRLIDECPEP 201 T + L KA L A RD K A V +V R+R+L +EAKRL++ C Sbjct: 145 TANRILTTFKAALNMAWRDGKVPTDAAWRRVTPFESVDQARIRYLSMDEAKRLLEACSPS 204 Query: 202 LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRD 261 K +V+ AL TG R +I L + D ++ +SKS + V L A Sbjct: 205 FKRLVRVALETGARYGELIALRVE--DFNADAGTLHIRDSKSGKPRHVVLTPEAV----- 257 Query: 262 QIGKHHKWVFVHTKAAKRADGTSTPAVRK-----MRIDSKTSWLSACRRAGIE-DFRFHD 315 FV K AK +S V++ R +AC A I+ FH Sbjct: 258 --------TFV-VKVAKGRSPSSMLLVKENGEPWQRDHQADPLKNACATAKIDPPINFHA 308 Query: 316 LRHTWASWLIQSGVPLSVLQEMGGWESIEMV-RRYAHLAPNHLTEHAR 362 LRHTWAS + GV L ++ G + + + YAHLAP+ + + R Sbjct: 309 LRHTWASHAVMRGVALQIVARQLGHTTTRVTEQHYAHLAPSFVADAIR 356 >UniRef50_Q2RHJ2 Phage integrase n=3 Tax=Firmicutes RepID=Q2RHJ2_MOOTA Length = 390 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 64/248 (25%), Positives = 103/248 (41%), Gaps = 28/248 (11%) Query: 143 TQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKRVRWLEKEEAKRLIDECPE-P 201 T+ + H+ + +A+ +A E K P K+V+ L E+ KR ++ + P Sbjct: 135 TRVRYIHVVLHEAMSQARESGLLLQNPTEAAKPPRHPKKKVQPLNPEQVKRFLETAKQDP 194 Query: 202 LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWV--------------NPEESKSNRAI 247 L AL TGLR+ I+ L WQ +D+Q+ + V P+ KS R I Sbjct: 195 LYPAFLLALGTGLRRGEILGLRWQDLDLQKGILQVRQSLIRTREGLKFEEPKTEKSRRQI 254 Query: 248 GVALNDTACKVLRDQIGKHHKWVFVH--TKAAKRADGTSTPAVRKMRIDSKTSWLSACRR 305 + + A + +H WV + D V R + R Sbjct: 255 PLPPSVVAA------LKRHKAWVNQNKLILGPDYEDHDLVFPVENGRPRDPKGFAEYFNR 308 Query: 306 ----AGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEM-VRRYAHLAPNHLTEH 360 AG+ R HDLRHT A+ L+ GV V+QE G ++ + + Y+H+ P + Sbjct: 309 LLDKAGLPHIRLHDLRHTHATLLLLEGVHPKVVQERLGHSTVSITLDIYSHILPGLQEKA 368 Query: 361 ARKIDDIF 368 A +ID + Sbjct: 369 AERIDGLL 376 >UniRef50_C5V1I5 Integrase family protein n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V1I5_9PROT Length = 411 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 85/380 (22%), Positives = 154/380 (40%), Gaps = 77/380 (20%) Query: 19 GKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRWLEEKADKKSLDS 78 G+ I ES GT D+ +A+ +R E+ + G PD F A ++L + K S+ + Sbjct: 28 GRTIHESCGTSDQDEAERYLARRLEEIRQASVYGVRPDRIFRVAATKYLSDNQHKASVVT 87 Query: 79 DKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEP 138 D ++ L+ F I E ++ S++H+ + + +A I+ Sbjct: 88 DAYMLQS-LDPF-------IGEMQL----SKLHDGTLQAYITARRKAGIK---------- 125 Query: 139 KPVSTQTKAKHLAMIKAILRAAERDWK------WLEKAPVIKIPAVRNKR----VRWLEK 188 +++ L++++ IL + R W+ WLE P++ + + R + W Sbjct: 126 ----SKSINNALSVVRRILSLSARKWRDEHGLTWLETPPLLSMLPTHDARKPYPISW--- 178 Query: 189 EEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQ-QIDMQR--RVAWVNPEESKSNR 245 EE + E P+ L + F + TG R+ + +L W +ID+ ++ PE+ Sbjct: 179 EEQTVFMQELPDHLARMALFKVNTGTREQEVCHLRWDWEIDVPELGTSVFLIPEDFGGRT 238 Query: 246 AIG---------VALNDTACKVLRDQIGKHHKWVFVH-------------TKAAKR---- 279 A V LND A V+ G H + VF + KA R Sbjct: 239 AYSGVKNGEDRLVVLNDVARSVVDSCRGIHPELVFTYEGNQTGRMNNSAWDKARLRTAMN 298 Query: 280 ---ADGTSTP------AVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVP 330 A G + P R + + + G+ + R HDL+HT+ L +GVP Sbjct: 299 MYMASGKTIPVDLLREGQRGILMTDELKKFLESAMPGLANVRVHDLKHTFGRRLRAAGVP 358 Query: 331 LSVLQEMGGWESIEMVRRYA 350 L + + G ++ ++ Y+ Sbjct: 359 LETRKVLLGHKNGDITSHYS 378 >UniRef50_D0KZD4 Integrase family protein n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KZD4_HALNC Length = 348 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 106/222 (47%), Gaps = 12/222 (5%) Query: 141 VSTQTKAKHLAMIKAILRAAERDWKW---LEKAPVIKIPAVRNKRVRWLEKEEAKRLIDE 197 +S T LA+I + A +W+ L I +P+ KR R LE E RL+ E Sbjct: 119 ISDSTIRLDLALISHVFTIARTEWQMEGLLNPVRSIAMPSASRKRDRRLEAGELDRLLVE 178 Query: 198 C----PEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALND 253 E + V FA+ T +R+S I++L Q ID +++ A++ +++K+N V L+ Sbjct: 179 LRKSRNEYVVPAVLFAIETAMRQSEILSLRTQDIDREKQTAYL--KDTKNNEPRVVPLSR 236 Query: 254 TACKVLRDQ-IGKHHKWVFVHTK-AAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDF 311 A +L + H +F T+ RA S R + I+ S + + + Sbjct: 237 AAMGILDTMPLPLHGGRLFSVTQDGLIRAFSRSVTQARNVYIEDCISANAQPDDHFLNNL 296 Query: 312 RFHDLRHTWASWLIQSG-VPLSVLQEMGGWESIEMVRRYAHL 352 +FHDLRH S ++G + + + ++ G ++I M+ RY HL Sbjct: 297 KFHDLRHEATSRFFETGNLEMMEVAQITGHKTITMLSRYTHL 338 >UniRef50_C2NSI2 DNA integration/recombination/invertion protein n=2 Tax=Bacillus cereus group RepID=C2NSI2_BACCE Length = 382 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 64/242 (26%), Positives = 111/242 (45%), Gaps = 26/242 (10%) Query: 152 MIKAILRAAERDWKWLEKAPVIKI--PAVR-NKRVRWLEKEEAKRLIDECPEPLKSVVKF 208 ++ A L+ A + K +++ P I I P +R + EE I+E +S + Sbjct: 144 IVSASLKKA-KVLKLIDENPTIGITLPKLRKTSEINVWTLEEVNHFINEGKNVYRSTRMY 202 Query: 209 -----ALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRA-IGVALNDTACKV---- 258 AL TG+R+ I+ L W+ ID + R+ ++ ++S + +G N + V Sbjct: 203 ICCVIALLTGMRQGEIMGLRWKDIDFENRIIYIRQTLTQSGKIKVGAKNNASIRNVHFPI 262 Query: 259 -LRDQIGKHHKWV----FVHTKAAKRADGTSTPAVRK----MRIDSKTSWLSACRRAGIE 309 L ++ H + V H K + D RK + + + + + + G+ Sbjct: 263 KLIGELELHRETVKKERLYHGKDYE--DNNLVICARKGNPLIPKNGRIEFYNLTEKLGLP 320 Query: 310 DFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIE-MVRRYAHLAPNHLTEHARKIDDIF 368 RFHDLRHT A+ LIQ V + ++ E G I+ + Y+H+ PN E A K+D +F Sbjct: 321 KIRFHDLRHTHATMLIQQNVNVKLISERLGHTDIQTTLNTYSHVLPNMQREVADKLDVMF 380 Query: 369 GD 370 G+ Sbjct: 381 GE 382 >UniRef50_A0LL76 Phage integrase family protein n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LL76_SYNFM Length = 381 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 60/206 (29%), Positives = 97/206 (47%), Gaps = 28/206 (13%) Query: 173 IKIPAVRNKRVRWLEKEEAKRLI----DECPEPLKSVVKFALATGLRKSNIINLEWQQID 228 I +P VRN++ L +E RL+ +E + +VK AL TG+R+ I+ L W ID Sbjct: 177 IPMPRVRNEKTEDLTPDELARLLKALSEEPNTQVAHIVKLALFTGMRRGEILKLRWTDID 236 Query: 229 MQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAV 288 + R +++ + K + L+++A ++L + +VF A+R D + Sbjct: 237 LDR--GFISIRDPKGGVDQRIPLSESARRILANHPKTDSLFVFPGRNGAQRTDINKS--- 291 Query: 289 RKMRIDSKTSWLSACRRAG--IEDFR-FHDLRHTWASWLIQSG-VPLSVLQEMGGWESIE 344 L+ + A +DFR H LRH +AS L SG V + LQ++ +S Sbjct: 292 -----------LNRIKEAAELPKDFRMLHGLRHAFASSLASSGEVDMYTLQKLLTHKSPT 340 Query: 345 MVRRYAHLAPNHLTEHARKIDDIFGD 370 M RYAHL E R+ D+ G+ Sbjct: 341 MTARYAHLR----DESLRRASDLAGE 362 >UniRef50_A9KUT0 Integrase family protein n=1 Tax=Shewanella baltica OS195 RepID=A9KUT0_SHEB9 Length = 318 Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 79/305 (25%), Positives = 132/305 (43%), Gaps = 49/305 (16%) Query: 66 WLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAK--IYSAVSRMHNRKTKEIWKQKV 123 WL+ D++ L I+ W HF G LK+ + + + M N ++ ++ Sbjct: 50 WLDAPIDRRPL---LELIDLWF-HFHGKNLKEGVNTRKNLITTCKLMGNPQSHQVNTNFY 105 Query: 124 QAAIRKGKELPVYEPKPVS---TQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRN 180 + + L PK + T+ + + +I A A E L+ AP IK+ A Sbjct: 106 LNY--RARRLEKITPKTANLELTRLQGVYSVLIAAGEFAGEHP---LKSAPPIKLQA--- 157 Query: 181 KRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEE 240 K +L K + +L+ + +VK L+TG R S NL Q+ + R+ ++N + Sbjct: 158 KDQSFLTKPQIAQLLALLSGEMLLIVKICLSTGARWSEAQNLTSSQL-LDDRINFINTKN 216 Query: 241 SKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWL 300 K NR I + + R ++ + +F D +L Sbjct: 217 GK-NRTIPIT------REFRAELPNGNGRLFT---------------------DCYHQFL 248 Query: 301 SACRRAGIEDFRF---HDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHL 357 + + +GIE + H LRHT+AS + +G + LQ++ G SI+M RYAHLAP+HL Sbjct: 249 AVLKSSGIELPKGQASHVLRHTFASHFVMNGGNILTLQKILGHGSIQMTMRYAHLAPDHL 308 Query: 358 TEHAR 362 E R Sbjct: 309 QEATR 313 >UniRef50_A6FXR9 Phage integrase n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6FXR9_9DELT Length = 421 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 94/334 (28%), Positives = 142/334 (42%), Gaps = 49/334 (14%) Query: 40 KRKAELWRVEKLGDL-PDVTFEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDI 98 +RKA+ V L + P+ +A L E A K+S S L F +RL I Sbjct: 57 RRKAKPQAVPTLAEFAPEFMAYQATLNKATELASKRS-----SLKNHLLPVFGDLRLDQI 111 Query: 99 SEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILR 158 A+ R RK V + R+ E +PK ++ HL ++ LR Sbjct: 112 DA----RAIDRYKMRKLSPEHAATVASTRRRAGE--GLKPKTINN-----HLMVLSRALR 160 Query: 159 AAERDWKWLEKAPVIKIPAVRNKRVRWLEKEEAKRLIDECPEPLKS---VVKFALATGLR 215 A++ W L++ P I++ V + +L+ EEA+R + E V A TGLR Sbjct: 161 VAQK-WGVLDRVPEIELLRVTKQPFDFLDFEEAERYLAAAREHYPDWHVFVLVAARTGLR 219 Query: 216 KSNIINLEWQQIDMQRRVAWV--------NPEESKSNRAIGVALN---DTACKVLRDQIG 264 ++ L+W+ + + R V KS +A V L A +V R+ +G Sbjct: 220 VGELLALQWKHVRLAGRTLRVELSYTRAGGVSSPKSGKAREVPLTWDVARALEVHREVLG 279 Query: 265 KHHK----WVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAG-IEDFRFHDLRHT 319 + VF + ADG + + S ++S +A + H LRHT Sbjct: 280 AKARARDALVFPN------ADG------ERGSLRSVGHFVSRIAKAAKLRHVHPHMLRHT 327 Query: 320 WASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLA 353 +AS + GVP+ V+QE G SIEM RYAHLA Sbjct: 328 FASHAVMRGVPMRVVQEWLGHASIEMTMRYAHLA 361 >UniRef50_Q129B4 Phage integrase n=1 Tax=Polaromonas sp. JS666 RepID=Q129B4_POLSJ Length = 387 Score = 70.9 bits (172), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 52/221 (23%), Positives = 99/221 (44%), Gaps = 23/221 (10%) Query: 142 STQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPA-VRNKRVRWLEKEEAK---RLIDE 197 + T + ++M+KA A ++ + P + R R+L+ E + ++E Sbjct: 160 TPTTANRCVSMVKAAFNWALKEGTYTGANPAGHVKKNTETSRTRYLQPAELAIFFQALEE 219 Query: 198 CPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACK 257 EP KS L TG R++N++ + W I ++ + + ++K+ + + L A Sbjct: 220 SEEPAKSFFMLCLLTGARRANVLAMRWADISLEDGIWRIPAGDAKAGEEMNIPLVPEAVT 279 Query: 258 VL---RDQIGKHHKWVFVHTKAAKRADGTSTPAVRKM--RIDSKTSWLSACRRAGIEDFR 312 +L + ++ WVF PA K + K +W + RR+G+ D R Sbjct: 280 LLTRLKIEVADTSPWVF--------------PADSKTGHYQEPKRAWATLRRRSGLADLR 325 Query: 313 FHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLA 353 HDLR T SWL+++G ++ + G +S++ Y +A Sbjct: 326 IHDLRRTMGSWLVRTGANTAINAKALGHKSMQAAAVYQRIA 366 >UniRef50_Q1Q3R1 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q3R1_9BACT Length = 98 Score = 70.9 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 31/73 (42%), Positives = 49/73 (67%) Query: 306 AGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKID 365 AGI+DFRFHDLRH +ASW Q+GV + + E+ G+++ M RYAH+ P HLT+ ++ Sbjct: 19 AGIDDFRFHDLRHCFASWNRQAGVGIYTIAELMGYKNTTMTMRYAHITPVHLTKAIGLLE 78 Query: 366 DIFGDNVPNMSHS 378 + ++ N++ S Sbjct: 79 KSYHESSTNLALS 91 >UniRef50_A6T2V9 Integrase n=1 Tax=Janthinobacterium sp. Marseille RepID=A6T2V9_JANMA Length = 325 Score = 70.9 bits (172), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 78/155 (50%), Gaps = 16/155 (10%) Query: 210 LATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKW 269 L TG R S I N+EW +IDM R +N +K + + + + D ++L + G + ++ Sbjct: 170 LDTGGRYSEIANIEWTRIDMDART--INLWRTKVSNGLILHMTDRVYQILLRRQG-NGRY 226 Query: 270 VFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGV 329 VF + R G ST ++RK A ++ G+E R H RHT A+ L++SG+ Sbjct: 227 VFQNKAGGAR--GYSTQSIRK-----------AIKKTGLEGCRVHSFRHTLATRLLRSGM 273 Query: 330 PLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKI 364 L ++E+ G IE YAHL N AR + Sbjct: 274 NLYEVKEILGHAKIETTMTYAHLELNETAIKARNL 308 >UniRef50_C6MQB4 Integrase family protein n=1 Tax=Geobacter sp. M18 RepID=C6MQB4_9DELT Length = 340 Score = 70.9 bits (172), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 95/386 (24%), Positives = 175/386 (45%), Gaps = 69/386 (17%) Query: 1 MSLFRRNE--IWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 MS+++R + ++Y ++++ G R+ +S G K++A+ AE +K+ + +T Sbjct: 1 MSVYKRGDKGVFYMNFTV-NGVRVFKSTGKFTKKEAKH------AEAMERQKMMEQASLT 53 Query: 59 FEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEI 118 +E R L +A ++ + W + +G + S + + + + + I Sbjct: 54 PQEIAARTLLSEAIEQVYQTR------WKNNKDGKQ----SRTRALRLIELIGDVQVGAI 103 Query: 119 WKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKW--LEKAPVIKIP 176 + V+ I K E V + T ++L ++K ILR ++W + L+K P Sbjct: 104 NEDVVRKIIFK------LEATKVKSATVNRYLEVLKTILRYKRQEWDFIHLKKQP----- 152 Query: 177 AVRNKRVRWLEKEE---AKRLI---DECPE-----PLKSVVKFALATGLRKSNIINLEWQ 225 R+R L K E A RL+ D C + +V+ L TG R S ++NL + Sbjct: 153 ---KGRIRVLSKPEEDKAIRLLRETDHCSRRHFYPQVADLVEILLDTGCRLSEVLNLPYD 209 Query: 226 QIDMQRRVA--WVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGT 283 ++ + W+N K +R + + ++L+++ + K F T G Sbjct: 210 DVNFDTNLISIWIN----KGDRPRSIPMTYRVRRILQERQKTNKKKPFSVTIYQA---GK 262 Query: 284 STPAVRK-MRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWES 342 + VRK M+++ T +F H LRHT A+ L+ GV L V++E G S Sbjct: 263 AWAWVRKEMKLERDT------------EFVLHALRHTCATRLVNKGVDLYVVKEWLGHSS 310 Query: 343 IEMVRRYAHLAPNHLTEHARKIDDIF 368 I++ RYAHLAP+ L HA + +++ Sbjct: 311 IQVTERYAHLAPDKLA-HAAAVLEMY 335 >UniRef50_A6G8N0 Phage integrase n=2 Tax=Plesiocystis pacifica SIR-1 RepID=A6G8N0_9DELT Length = 369 Score = 70.9 bits (172), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 72/242 (29%), Positives = 110/242 (45%), Gaps = 32/242 (13%) Query: 141 VSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKRVRWLEKEEAKRLIDECPE 200 +ST T + HL ++K +L A R W+ L++ P I P + R +L K+EA+ L+ E Sbjct: 145 LSTSTISNHLIVLKRLLNVARR-WELLDRIPEIPTPK-KPARTDFLSKDEARALLVGAEE 202 Query: 201 PLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKV-- 258 +S+V L TGLR + L W+ +D++ V E++ +N IG + V Sbjct: 203 QWRSLVLLGLRTGLRLGELRGLRWRDVDLE--GGRVRVEQAVTNAGIGTPKSGKGRSVPL 260 Query: 259 ---LRDQIG--------KHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAG 307 +R+ + K VF + A T A+ + A AG Sbjct: 261 ARDIREALAVRRGPRRRKPDTLVFAQSDGRPLAHNTIGRALTR-----------AAEAAG 309 Query: 308 IED-FRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDD 366 IE H LRHT+AS + +GVP+ ++Q G I M RYAHL+P H ID Sbjct: 310 IERRITPHVLRHTFASHAVLAGVPIRIVQGWLGHADITMTMRYAHLSPE---GHGGMIDR 366 Query: 367 IF 368 + Sbjct: 367 LL 368 >UniRef50_A6SV87 Site-specific recombinase, phage integrase family n=1 Tax=Janthinobacterium sp. Marseille RepID=A6SV87_JANMA Length = 328 Score = 70.9 bits (172), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 56/211 (26%), Positives = 97/211 (45%), Gaps = 28/211 (13%) Query: 150 LAMIKAILRAAERDWKW---LEKAPVIKIPAVRNKRVRWLEKEEAKRLIDECPEP----L 202 LA+I + A +DW + +I+ P + R R L + E L++ C + L Sbjct: 128 LALISHVYEVAIKDWGLEVLINPVRIIRKPKLPRGRERRLTEGEEDLLLEYCKKKGAALL 187 Query: 203 KSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQ 262 + V+ AL T +R+ I +L + ID+ R+ +++ ++ R V L+ A K L + Sbjct: 188 RLVIILALETAMRRGEIASLHTENIDLDSRLIFLDQTKNGDKRK--VPLSRRAQKELENY 245 Query: 263 I-GKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWA 321 + GKH + V +H D S ++ AC+ GI HDLRH Sbjct: 246 LCGKHGELVPLH------PDNISG------------AFSQACKVCGISGLTLHDLRHEAT 287 Query: 322 SWLIQSGVPLSVLQEMGGWESIEMVRRYAHL 352 S L + G + + + G +++ M++RY HL Sbjct: 288 SRLFEKGFNMMEVAAITGHKTLTMLKRYTHL 318 >UniRef50_Q3SUE5 Phage integrase n=6 Tax=Alphaproteobacteria RepID=Q3SUE5_NITWN Length = 400 Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 54/195 (27%), Positives = 89/195 (45%), Gaps = 21/195 (10%) Query: 182 RVRWLEKEEAKRL---IDECPEPLKS-VVKFALATGLRKSNIINLEWQQIDMQRRVAWVN 237 R R+L +E RL +D P + V+ L TG R+ ++ W Q D+ V W+ Sbjct: 206 RDRYLSTDEIGRLSAALDAHPNRRAADAVRLILLTGARRGEVLGARWDQFDLDAAV-WIK 264 Query: 238 PEESKSNRAIGVA-LNDTACKVLRD---QIGKHHKWVFVHTKAAKRADGTSTPAVRKMRI 293 P + R + A ++ +A +LR ++ K +WVF D P Sbjct: 265 PAATTKQRRLHRAPISASAAALLRTIRLRVPKDCEWVFP-------GDAEGKPLQ----- 312 Query: 294 DSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLA 353 D K W +A + R HDLRHT+AS L+ G+ L ++ ++ G ++ +RYAHL Sbjct: 313 DIKRFWEDVRTKAELPAVRTHDLRHTFASLLVSGGMTLPMIGKLLGHTQVQTTQRYAHLL 372 Query: 354 PNHLTEHARKIDDIF 368 + L ++ D+ Sbjct: 373 DDPLRAGLEQVGDML 387 >UniRef50_Q04676 Rci protein n=10 Tax=Enterobacteriaceae RepID=Q04676_ECOLX Length = 374 Score = 70.5 bits (171), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 56/219 (25%), Positives = 101/219 (46%), Gaps = 27/219 (12%) Query: 141 VSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKIPAVRNKRVRWLEKEEAKRL---I 195 ++ T LA++ ++ A +W PV ++ P + + R R L E +RL Sbjct: 77 ITGNTVRLELALLSSLFNIARVEWGTCRMNPVELVRKPKISSGRDRRLTSGEERRLSRYF 136 Query: 196 DECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTA 255 E + L + AL T +R+ I++L W+ +D+Q VA + ++ + R V L+ A Sbjct: 137 KEKNQALYVIFHLALETAMRQGEILSLRWEHVDLQHGVAHLPTTKNGAPR--DVPLSRKA 194 Query: 256 CKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHD 315 L+ + + +F +T + K++W +A + IE+ FHD Sbjct: 195 RNYLQMLPTQLNGNIFSYTSSG-----------------FKSAWRTALQELKIENLHFHD 237 Query: 316 LRHTWASWLIQSGVPLSVLQ--EMGGWESIEMVRRYAHL 352 LRH S + G L+V++ + G S+ M++RY HL Sbjct: 238 LRHEAISRFFELGT-LNVIEVAAISGHRSLNMLKRYTHL 275 >UniRef50_B8FMY9 Integrase family protein n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FMY9_DESAA Length = 372 Score = 70.5 bits (171), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 77/306 (25%), Positives = 133/306 (43%), Gaps = 45/306 (14%) Query: 57 VTFEEACLRWLE-EKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKT 115 V FE+ +L+ K +KKS ++D R + E F+G L DI N Sbjct: 79 VLFEDTVDAYLDWAKENKKSWETDFHRSKALKEGFKGKLLSDI-------------NPFM 125 Query: 116 KEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKI 175 E +K AI K K V+ + A+ KAI +K K+ Sbjct: 126 CEKYKMARAKAIAK---------KSVNKELSLARQAIDKAIEWGKYDGTNPFDKVARFKV 176 Query: 176 PAVRNKRVRWLEKEEAKRLIDECPEPLK-SVVKFALATGLRKSNIINLEWQQIDMQRRVA 234 + ++ L E+ + ++DE P+K +V F G R S I NL+W+ +D++ A Sbjct: 177 --TKGRKPGSLTPEQVQNIMDEIAHPVKRDMVAFDFYAGWRISEIRNLKWEDVDLEAGAA 234 Query: 235 WVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRID 294 W+ E K+ +++ V L++ A +++ Q + +VF + + Sbjct: 235 WI--VEPKNGQSVKVELSNAALSIIKKQ-DRKGPYVFCFKNGMP------------FKTN 279 Query: 295 SKTSWLSACRRAGIE---DFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAH 351 + +A +RAG++ +H LR TWAS ++Q+G + L+ +G W+ M YA Sbjct: 280 LHKTITNAAKRAGVDLPPRKAWHILRRTWASMMLQNGCDVETLRVLGNWKDYSMPMWYAD 339 Query: 352 L-APNH 356 +P H Sbjct: 340 AGSPEH 345 >UniRef50_C8WAJ5 Integrase family protein n=2 Tax=Atopobium RepID=C8WAJ5_ATOPD Length = 305 Score = 70.5 bits (171), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 61/249 (24%), Positives = 117/249 (46%), Gaps = 49/249 (19%) Query: 142 STQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIP---AVRNKRV-----RWLEKEEAKR 193 S +T +HL+ ++ +KW+++ +I A+ N R + + R Sbjct: 71 SAKTLNRHLSALRGF-------YKWMQREKLIATDPALALSNPRAPRNLPHTMTDSDVNR 123 Query: 194 LIDECPEPL------KSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAI 247 L++ C ++ ++F ATG R S + L +Q+D+Q + + SK Sbjct: 124 LLESCDVSTAAGLRDRAFLEFLYATGARISEVATLRLEQVDLQNGTVRLFGKGSKERI-- 181 Query: 248 GVALNDTACK-------------VLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRID 294 V L ++A + +L+D+ G+ H +F+ + R + S ++RK+ Sbjct: 182 -VPLYESAIEWLKKYLRSSRPTLLLKDKTGRVHSALFI----SVRGNNMSADSLRKV--- 233 Query: 295 SKTSWLSACRRAGIED-FRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLA 353 +S+L+A AG++ H +RHT+A+ L+ G L ++QE+ G ES+ + Y HL+ Sbjct: 234 -FSSYLTA---AGLDSSLSPHAMRHTYATELLGGGADLRIVQELLGHESLSTTQVYTHLS 289 Query: 354 PNHLTEHAR 362 + L E A+ Sbjct: 290 VDRLKEAAK 298 >UniRef50_A4J1T6 Phage integrase family protein n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J1T6_DESRM Length = 383 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 64/255 (25%), Positives = 113/255 (44%), Gaps = 34/255 (13%) Query: 141 VSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKR--VRWLEKEEAKRLIDEC 198 +S +T H ++K L A + W+ L + P + A +NK+ + + R+I Sbjct: 126 LSNRTVQYHHRVLKEALSHAVQ-WQLLNRNPADAVQAPKNKQKEIELPDLSNIDRMIQAS 184 Query: 199 PE-PLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWV---------------NPEESK 242 + P ++ A+ TG+R+ ++ L WQ +D + + +V P+ K Sbjct: 185 KDHPDHIIIISAVFTGMRRGELLGLRWQDLDFDKNLLYVRNTLQRLPDKGKFFTEPKSKK 244 Query: 243 SNRAIGVA------LNDTACKVLRDQIGKHHKWVFVHTKAAKRADGT-STPAVRKMRIDS 295 S R I + L D K L ++ H + H R DGT + P R Sbjct: 245 SRRQIIIPHFLTNLLKDHRKKQLEERFKLGHLYQ-DHDLVFPRPDGTPADPGTVSHR--- 300 Query: 296 KTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEM-VRRYAHLAP 354 + + + G+ RFHDLRH A+ L+ + +QE G ++I + + Y+HL P Sbjct: 301 ---FKALVDKIGLSGLRFHDLRHFHATLLLAENINPKKVQERLGHQTISLTLDVYSHLIP 357 Query: 355 NHLTEHARKIDDIFG 369 + E A K+++I+G Sbjct: 358 SMQNEIAEKLEEIYG 372 >UniRef50_B8D1P6 Phage integrase family protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1P6_HALOH Length = 391 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/178 (24%), Positives = 89/178 (50%), Gaps = 18/178 (10%) Query: 208 FALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAI------------GVALNDTA 255 AL TG+R+ ++ L+W+ IDM+++ V + ++++ + + + D Sbjct: 207 LALNTGMRRGELLGLQWKDIDMEKKRIEVKRQLARTDEGLIFKKVKTKSGNRTIPITDNV 266 Query: 256 CKVL-RDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKT---SWLSACRRAGIEDF 311 + L R QI + K + + K+AD ++ + ID + + G+ + Sbjct: 267 VRELKRHQIKQGEKRLALGEAYNKKADLVASNGIGN-PIDPRNLVRDFKDIIEETGLPEI 325 Query: 312 RFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEM-VRRYAHLAPNHLTEHARKIDDIF 368 R+HDLRHT+A+ +++ P+ LQ++ G SI + + Y+H+ L E RK++ +F Sbjct: 326 RYHDLRHTFATLFLEAKGPIKTLQQILGHSSITVTIDTYSHVTEEMLIEAERKMETMF 383 >UniRef50_A4U5E9 Phage-related integrase, n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4U5E9_9PROT Length = 190 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 55/173 (31%), Positives = 78/173 (45%), Gaps = 25/173 (14%) Query: 188 KEEAKRLIDECPEPLKSV--VKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNR 245 +EE RL+ E + ++ TG R + I+ LEW+ ID R ++ ++ Sbjct: 10 QEEVNRLVQEAGGQQAEIEGIRLLCLTGCRLNEILCLEWRAIDFLNRRLMLDQHKTDKKG 69 Query: 246 AIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMR------IDSKTSW 299 V LN A +VL TK R DG P V R I+ + W Sbjct: 70 TKAVPLNTDALEVL--------------TKL-PRIDGN--PFVIPGRDGIGHLINLQKPW 112 Query: 300 LSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHL 352 C+ A +E+ R HDLRH++AS +GVPL VL + G S + RYAHL Sbjct: 113 KRLCKAAELENMRIHDLRHSFASTAASAGVPLQVLGGILGHSSPQTTARYAHL 165 >UniRef50_A7HRY8 Integrase family protein n=8 Tax=Alphaproteobacteria RepID=A7HRY8_PARL1 Length = 380 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 82/182 (45%), Gaps = 28/182 (15%) Query: 189 EEAKRLI---DECPE---PLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWV----NP 238 +E KRLI D P PL +++FA+AT +R+ I + W ID R + +P Sbjct: 177 DELKRLIAYFDANPRQLIPLARIIRFAVATAMRQDEICRIRWGDIDADTRTVLIRDRKDP 236 Query: 239 EESKSNR---AIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDS 295 E+ N + A A +LR+Q A + D R + Sbjct: 237 RETDGNDQKVPLLAATGFDAWAILREQ-----------KTAVAKGDRIFPYNARSV---- 281 Query: 296 KTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPN 355 T++ ACR IE+ FHDLRH AS L ++G + + + G +M++RY +L P Sbjct: 282 GTAFRRACRDLKIENLHFHDLRHEGASRLFEAGFTIEQVALVTGHRDWKMLKRYTNLRPE 341 Query: 356 HL 357 HL Sbjct: 342 HL 343 >UniRef50_C7LSP4 Integrase family protein n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LSP4_DESBD Length = 392 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 62/240 (25%), Positives = 116/240 (48%), Gaps = 28/240 (11%) Query: 139 KPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV---IKIPAVRNKRVRWLEKEEA---- 191 K +S QT+ LA++K +LR A D ++ PV ++P V N++ ++ +++ Sbjct: 154 KTLSAQTQKHVLALLKRMLRWAA-DMGHID-PPVHLKFRMPTVDNEKTEFMTEDQLSAYL 211 Query: 192 KRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVAL 251 K L +E + + + AL TG+R++ ++N+ W +D++ + +K+ + + L Sbjct: 212 KALDEESNQHCAAFFRIALLTGIRRTALLNVMWSDVDLENGFLTLRGATAKNEKTQTIPL 271 Query: 252 NDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKM--RIDSKTSWLSACRRAGI- 308 + A +VL+ + + +++ R D +R+M R+ K AG+ Sbjct: 272 SPGAVEVLKGIVRPNSPYIWPGQNGGARED------MRRMGRRLRDK---------AGLP 316 Query: 309 EDFR-FHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDI 367 DFR H LRH +AS L SG L + + + + +RYAHL+ L A DD+ Sbjct: 317 ADFRPVHGLRHHFASHLASSGASLYEVGTLLTHGDLSVTKRYAHLSDQALRRAASLADDM 376 >UniRef50_B8EKX9 Integrase family protein n=1 Tax=Methylocella silvestris BL2 RepID=B8EKX9_METSB Length = 428 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 62/228 (27%), Positives = 103/228 (45%), Gaps = 23/228 (10%) Query: 150 LAMIKAILRAAERDWK------WLEKAPVIKIPAVRNKRVRWLEKEEAKRLIDECPEPLK 203 L +++A L R K W P ++ A RVR+ ++E +RL++ + Sbjct: 199 LTILRAALNQGFRSGKITSDTVWRTIQPFREVDA---PRVRYFTQDEVRRLVNAAQGEFR 255 Query: 204 SVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRD-Q 262 S+V AL TG R + L+ + +V +SKS +A V L + R Sbjct: 256 SLVNAALFTGCRYGELCRLQVGDFNPDAGTVFVG--QSKSGKARHVVLTEEGQGFFRQLT 313 Query: 263 IGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWAS 322 G+ + + RADG A ++R ++ + +AG FH LRHT AS Sbjct: 314 AGRPTNALML-----SRADGAPWGASHQIRPMAEACKAAKIAKAG-----FHILRHTAAS 363 Query: 323 WLIQSGVPLSVL-QEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIFG 369 + GVP+ V+ + +G +S + YAHLAP+++ + R+ FG Sbjct: 364 HNVMGGVPMPVVAKNLGHADSRMTEKHYAHLAPSYVADQIRQFAPTFG 411 >UniRef50_C5CWK1 Integrase family protein n=3 Tax=Proteobacteria RepID=C5CWK1_VARPS Length = 405 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 8/157 (5%) Query: 201 PLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLR 260 PL +++FA+AT +R+ I + W+ ID + R V + ++ N KV Sbjct: 195 PLGRIMRFAVATAMRQDEICRIRWEDIDAKTRTVIVRDRKDPRDK------NGNDQKVPL 248 Query: 261 DQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTW 320 + W + + K G S+ T++ AC+ I+D +FHDLRH Sbjct: 249 LDVTGFDAWAILEEQ--KPFSGNSSLVFPYNGRSVGTAFRRACKELKIKDLKFHDLRHEA 306 Query: 321 ASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHL 357 AS L ++G + + G + +M++RY HL P HL Sbjct: 307 ASRLFEAGFTIEQAALVTGHKDWKMLKRYTHLRPEHL 343 >UniRef50_B5ZFU3 Integrase family protein n=1 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=B5ZFU3_GLUDA Length = 348 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 66/270 (24%), Positives = 121/270 (44%), Gaps = 25/270 (9%) Query: 98 ISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAIL 157 I+E + ++++H R+ + + + + K P P+S T + +++A L Sbjct: 89 INEGMGHLRINQIHQRQWDDYAASRFRKPNARSKRPVEGAPVPISLGTLKREFNVLRAAL 148 Query: 158 RAAERDWKWLEKAPVIKIPAVRNKRVRWLEKEEAKRLIDECPEP-LKSVVKFALATGLRK 216 R A R+ + L+K P ++ P R R++ K EA+RL+D C P +++ + A+ TG RK Sbjct: 149 RHAWRNHR-LDKPPTLEGPGGSAPRDRYITKAEARRLLDACETPHIRAFLALAMFTGARK 207 Query: 217 SNIINLEWQQIDMQ-RRVAWVNPEE--SKSNRAIGVALNDTACKVLRDQIGKHHKWVFVH 273 +I+ L W ++ R+ + P + RAI +D LR ++ + HK V Sbjct: 208 GSILALTWDRVMFDLGRIDFQEPGRKLTAKRRAIVPMTDD-----LRAELTEAHK-VRTC 261 Query: 274 TKAAKRADGTSTPAVR----KMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGV 329 + A G T +R K+ + SW H +H+ ASW+ + V Sbjct: 262 DYVVEWAGGPITYGIRWPLKKLAQKAGLSWTPTP----------HHFKHSVASWMAMAKV 311 Query: 330 PLSVLQEMGGWESIEMVRRYAHLAPNHLTE 359 P+ + + + R Y P++L E Sbjct: 312 PIDQAADWLATDPKTLRRVYRKFDPDYLRE 341 >UniRef50_C6QSP6 Integrase family protein n=1 Tax=Geobacillus sp. Y4.1MC1 RepID=C6QSP6_9BACI Length = 399 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 72/272 (26%), Positives = 115/272 (42%), Gaps = 47/272 (17%) Query: 139 KPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKIPAVRNKRVRWL------EKEE 190 KP++T+T I+ IL+ A +W+ ++ P +K P + + V+ + E E Sbjct: 139 KPLATRTIENAYLTIRNILQRAV-EWQIIKSNPASAVKKPKSKKEAVKEVQVYDEKEVEA 197 Query: 191 AKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVN------------- 237 R + P + A+A GLR+ ++ LEW ID+++ V +N Sbjct: 198 LFRAVQNEPFHWRIFTTLAIAAGLRRGELLALEWSNIDLEKGVIRINKAIVKGRKRSVEK 257 Query: 238 -PEESKSNRAIGVALNDTA-CKVLRD-------QIG----KHHKWVFVHTKAAKRADGTS 284 P+ KSNR + + + A K+ R Q G + +++F + R + Sbjct: 258 SPKTKKSNRLVSLPKSVVAELKLYRRHWLKQKLQAGDLWKEEKEYLFCNIDG--RHFYPT 315 Query: 285 TPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIE 344 TP T W +RAGI R HDLRHT A+ LI GV ++ E G I Sbjct: 316 TPT---------TWWRRFTKRAGIRYIRLHDLRHTSATLLINQGVHAKIIAERLGHSDIR 366 Query: 345 MVRR-YAHLAPNHLTEHARKIDDIFGDNVPNM 375 + Y H E A K+D +F + M Sbjct: 367 VTMDIYGHALQKADHEAANKLDHLFTNTSSQM 398 >UniRef50_B4WEQ1 Site-specific recombinase, phage integrase family protein n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WEQ1_9CAUL Length = 429 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 81/168 (48%), Gaps = 11/168 (6%) Query: 204 SVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIG---VALNDTACKVLR 260 +V + L TG R++ I L W ++D RR + P +K+ G ++LND A +L+ Sbjct: 266 AVYRLLLLTGARRNEIAGLRWTEVDFDRRRLVLPPSRTKAGGRTGDRRISLNDMAYGILQ 325 Query: 261 DQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTW 320 + FV A+K +G +T +SK +A +E R HDLRH++ Sbjct: 326 RLYKTRGRSQFVF-PASKGDNGYATS-------ESKIWRDKVLPKAKLEGVRIHDLRHSF 377 Query: 321 ASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIF 368 AS+ + G L ++ + G + RYAHL+ + + A +I + F Sbjct: 378 ASFALADGASLPMIGKALGHANSRATERYAHLSDDPVRALAERIGERF 425 >UniRef50_B5K270 Integrase n=1 Tax=Octadecabacter antarcticus 238 RepID=B5K270_9RHOB Length = 389 Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 82/322 (25%), Positives = 133/322 (41%), Gaps = 56/322 (17%) Query: 56 DVTFEEACLRWLEE--KADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNR 113 ++TF +LE+ K K+S D+ + +L+H+ ++ I + + V R+H Sbjct: 100 EMTFGALFTEYLEKHSKVHKRSWAYDEREVNKFLKHWFKRKISSIEKPE----VERLH-- 153 Query: 114 KTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVI 173 + GKE +Y+ + L I++I A DW W P Sbjct: 154 -------------AKVGKENGLYQANRL--------LERIRSIFSKAT-DWGWNGVNPAT 191 Query: 174 KIPAVRNK-RVRWLEKEEAKR----LIDECPEPLKSVVKFALATGLRKSNIINLEWQQID 228 I R K R R+L+ EE R L +E E + +L G RKSN + + W +I Sbjct: 192 GIKKYREKSRDRFLQPEELPRFFEALSNEPNEVARDFFMISLLAGARKSNTLAMRWDEIS 251 Query: 229 MQR---RVAWVNPEESKSNRAIGVALNDTACKVLRD-QIGKHHKWVFVHTKAAKRADGTS 284 R+A +K++ V L+ A ++L++ ++ WVF DG S Sbjct: 252 FHGETWRIA-----RTKNDDPQIVHLSPQAMEILKERKLHSLSPWVFP-------GDGAS 299 Query: 285 TPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIE 344 D K +W+ + AGI D R HDLR T SW +G ++ + G S + Sbjct: 300 GHLA-----DPKKAWMRILKEAGIADLRIHDLRRTLGSWQAATGANSYIIGKSLGHRSQQ 354 Query: 345 MVRRYAHLAPNHLTEHARKIDD 366 YA L + + + K D Sbjct: 355 STAVYARLNLDPVRDSVNKATD 376 >UniRef50_UPI0000383636 COG0582: Integrase n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI0000383636 Length = 336 Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 64/253 (25%), Positives = 108/253 (42%), Gaps = 52/253 (20%) Query: 180 NKRVRWLEKEEAKRLIDE-------CPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRR 232 NKR R+L EE L+D ++++F L TG R+ ++ W Q+D++ Sbjct: 79 NKRERYLSTEEISHLLDAMNKHTVAASRHCANLIRFLLLTGARRGETMSATWDQVDLETG 138 Query: 233 VAWVNP----EESKSNR----AIGVAL---------------NDTACKVLRDQIGKHH-- 267 V W+ P ++ K++R A +AL N+ K L GK H Sbjct: 139 V-WIKPSSHTKQKKTHRVPLSAPALALLVDMKAKADAEAKKANEEPSKFLFPGRGKDHIT 197 Query: 268 ----KWVFVHTKA-----AKRADGTSTPAVRKMRIDS------KTSWL---SACRRAGIE 309 W + +A A + + T+ V ++ ID +W AGI Sbjct: 198 SPKKYWEMIRERATVSLWASKPETTAGKLVAELTIDDLPEHRKVVAWAQIKGVELPAGIT 257 Query: 310 DFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIFG 369 D HDLRH++AS L SG+ L ++ ++ G + RYAHL + L E ++ + Sbjct: 258 DVNVHDLRHSYASILASSGLSLPIIGQLLGHTQTQTTARYAHLFDDPLREATNRVGSLL- 316 Query: 370 DNVPNMSHSEIME 382 D + + +E+ + Sbjct: 317 DGLASGRSAEVTQ 329 >UniRef50_A3D8Y1 Phage integrase family protein n=4 Tax=Shewanella RepID=A3D8Y1_SHEB5 Length = 451 Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 63/233 (27%), Positives = 109/233 (46%), Gaps = 33/233 (14%) Query: 148 KHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKR---VRWLEKEEAKRL---IDECPEP 201 ++L ++++ + A R L P I I +NKR R+L E +RL +DEC E Sbjct: 161 RNLDTLQSVFKLALRQGHCLTN-PCIGIR--QNKRRVLNRFLSVAEMQRLSVALDECEEV 217 Query: 202 LKSVVKFA------LATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTA 255 S+ + A L TG R S I L+ + + R ++ +SK+ + + + A Sbjct: 218 GGSIAQCADILRLLLLTGCRLSEITFLKGEYV----RGNELHLPDSKTGAKV-LYIGQAA 272 Query: 256 CKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHD 315 +L ++H +T+ G ST V+ + WL ++ GIED R HD Sbjct: 273 VDIL----SRYH--CKANTELFPMKQGASTSLVQSL-------WLRLRKQIGIEDVRLHD 319 Query: 316 LRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIF 368 LRHT+AS+ + G + ++ + G + + M RY H+ + + + A I +F Sbjct: 320 LRHTFASYAVMDGCSIPMVASLLGHKKVTMTLRYTHVGDDSVEQAAEVIGAVF 372 >UniRef50_B1VR34 Putative integrase/recombinase n=1 Tax=Streptomyces griseus subsp. griseus NBRC 13350 RepID=B1VR34_STRGG Length = 343 Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 68/242 (28%), Positives = 98/242 (40%), Gaps = 36/242 (14%) Query: 155 AILRAAERDWKWLEKAPVIKIPAVRNKRVRWLEKEEAKRLID---ECPEPLKSVVKFALA 211 A+ A R + A V K P + + V +E +L+D + P + VV AL Sbjct: 48 ALNEAVRRGHLTVNPASVAKAPRLEEEEVEPYTVDEVHKLLDLANKTGHPARWVVSLAL- 106 Query: 212 TGLRKSNIINLEWQQIDMQRRVAWVN-------------------PEESKSNRAIGVALN 252 GLR+ ++ L+W +D + RV V+ P I Sbjct: 107 -GLRQGEVLGLKWTDVDFELRVMTVHRNRLRPRYEHGCGNHCGRKPGYCPQKVNIRRETK 165 Query: 253 DTACKVLRDQIGKHHKWV---FVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIE 309 DT + R IG V H +A +R P R R++ + AG+ Sbjct: 166 DTKSRAGRRPIGNPEPLVQLLLQHRRAQERDRRAPQPEHRPPRVED------LLKAAGLR 219 Query: 310 DFRFHDLRHTWASWLIQSGVPLSVLQEMGGWE---SIEMVRRYAHLAPNHLTEHARKIDD 366 R HD RHT A+ L+ GVP +V+ + GWE S M RRY HL LT+ A KI Sbjct: 220 AGRLHDARHTAATVLLILGVPDTVVDAIMGWEPGKSARMRRRYQHLTNRVLTDAADKIGG 279 Query: 367 IF 368 + Sbjct: 280 LL 281 >UniRef50_B1VP49 Putative phage integrase n=1 Tax=Streptomyces griseus subsp. griseus NBRC 13350 RepID=B1VP49_STRGG Length = 423 Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 65/253 (25%), Positives = 107/253 (42%), Gaps = 23/253 (9%) Query: 139 KPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKRVRWLEKEEAKRLIDEC 198 +P + + H + A+ +A + A +++ P V K VR L+ E + L+ Sbjct: 158 RPSARTVQYIHAVLRSALQQAIREELIARNVARIVETPTVEPKEVRPLDAAEVRLLLKTA 217 Query: 199 -PEPLKSVVKFALATGLRKSNIINLEWQQIDM--------------QRRVAWVNPEESKS 243 P L ++ ++TGLR+ + L W +D+ +R + + P+ +S Sbjct: 218 RPHRLYALWLLLVSTGLRRGEALGLTWADVDLTAGTLRVRRNVQRIRRELIFGTPKTMRS 277 Query: 244 NRAIGV------ALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKT 297 R I + AL + R+Q KW + A T T V R ++ Sbjct: 278 VRTISLPKSCVQALTAHRTQQEREQKVAGAKWQQTPGQPAGLVFTTLTGRVTDPRSLNRM 337 Query: 298 SWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEM-VRRYAHLAPNH 356 + CR A + R HDLRHT AS L+ GV + E G +I M + YAH+ + Sbjct: 338 LTI-LCRDAKVRRVRVHDLRHTCASLLLAQGVDARTIMETLGHSTITMTLDTYAHVMGST 396 Query: 357 LTEHARKIDDIFG 369 L A ++DD G Sbjct: 397 LRAAAEQMDDALG 409 >UniRef50_Q3R024 Phage integrase n=3 Tax=Xylella fastidiosa RepID=Q3R024_XYLFA Length = 357 Score = 67.8 bits (164), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 58/211 (27%), Positives = 93/211 (44%), Gaps = 18/211 (8%) Query: 157 LRAAERDWKWLEKAPVIKIPAVRNKRVRWLEKEEAKRLIDE--CPEPLKSVVKFALATGL 214 L A + ++L + +I P R++R+ E+ + +DE P P+ +V+FAL T Sbjct: 156 LMALDEAGEFLRQHRIIAKPKRRDRRLTVEEEMKLLTHMDERRGPIPMGMIVRFALLTAR 215 Query: 215 RKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQ---IGKHHKWVF 271 R+ I L W +D + +A + + R IG N+ ++L I K Sbjct: 216 RQDEITRLLWTDLDRDKGIALLR-DVKHPTRRIG---NNKTFRMLSPAWALIDMQQKMTM 271 Query: 272 VHTKAAKRADGTSTPAVRKMRIDSKT---SWLSACRRAGIEDFRFHDLRHTWASWLIQSG 328 H + D P DSK+ ++ A R GI+D FHDLRH S L + G Sbjct: 272 CHVIGKETQDPRVFP------FDSKSISAAFTRAVRFLGIKDLHFHDLRHEATSRLFEKG 325 Query: 329 VPLSVLQEMGGWESIEMVRRYAHLAPNHLTE 359 + + + ES ++RY HL P + E Sbjct: 326 YSIQEVAQFTLHESWTTLKRYTHLKPEDVPE 356 >UniRef50_Q72FH7 Site-specific recombinase, phage integrase family n=1 Tax=Desulfovibrio vulgaris str. Hildenborough RepID=Q72FH7_DESVH Length = 380 Score = 67.8 bits (164), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 68/242 (28%), Positives = 109/242 (45%), Gaps = 36/242 (14%) Query: 154 KAILRAAERDWKWLEKAPV-------IKIPAVRNKRVRWLEKEEAKRLI---DECPEPLK 203 +A+ RA RD ++ P ++PAV + R R+ EEA L+ PL Sbjct: 158 RAVYRAI-RDQRYRGANPFSSRRESAYRMPAVDSARERFFTPEEATTLLATLQRSSRPLY 216 Query: 204 SVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQI 263 ++ +L TGLR + I L Q + ++N + + RA A D ++L + + Sbjct: 217 AMSLLSLRTGLRVTEIFGLTGQSLSPA--TGFINFTDKQHKRARVHADGDI-FEMLAEFV 273 Query: 264 GKHHKWVF--VHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFR----FHDLR 317 G + +F + +R T + V ++ ++ AGI D R FH R Sbjct: 274 GAPGELLFPTADGRRQRRVSSTFSRTVERLGLN-----------AGITDDRQRITFHTWR 322 Query: 318 HTWASWLIQSG-VPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIFGDNVPNMS 376 HT+ASWL QSG V L L + +++ M RYAHL P+ R+ I G + N S Sbjct: 323 HTFASWLAQSGQVTLQELMGLMRHKTLSMTLRYAHLIPS----QQREKLSIVGQALANAS 378 Query: 377 HS 378 ++ Sbjct: 379 NN 380 >UniRef50_Q31CF2 Putative site-specific integrase/recombinase n=1 Tax=Prochlorococcus marinus str. MIT 9312 RepID=Q31CF2_PROM9 Length = 204 Score = 67.8 bits (164), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 96/207 (46%), Gaps = 36/207 (17%) Query: 163 DWKWLEKAPVIKIPAVRNKRVR--------WLEKEEAKRLIDEC-----PEPLKSVVKFA 209 DW E+ IK R RVR +L E+ KRL+ E P L+ + K A Sbjct: 13 DWARDERGAEIKDNPARQLRVRGTGDARAPFLTNEDEKRLLFELSQMSNPNHLR-LTKLA 71 Query: 210 LATGLRKSNIINLEWQQIDMQRRVAWVNPEESKS-NRAIG---VALNDTACKVLRDQIGK 265 LATG R+S +++L W+ ID+++++ ++ + + + + G V + A K+L + + Sbjct: 72 LATGFRRSELLSLTWRNIDLKKKLLYICRKNCAAIDNSSGMRLVPFPEKAQKILEESNER 131 Query: 266 HHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLI 325 + K + + A+ + A +RAG++ RFHDLRH S + Sbjct: 132 NGKVIELSKGVAR------------------NGFDKARKRAGLQTLRFHDLRHIAISRMW 173 Query: 326 QSGVPLSVLQEMGGWESIEMVRRYAHL 352 SG+ + G I+M+ RY+H Sbjct: 174 SSGMNALEISACSGHRDIKMLMRYSHF 200 >UniRef50_Q2W123 Integrase n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2W123_MAGSA Length = 363 Score = 67.8 bits (164), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 108/219 (49%), Gaps = 28/219 (12%) Query: 141 VSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKIPAVRNKR-VRWLEKEEAKRL--I 195 V+ + + + ++ A+L + R ++ PV ++ P V ++R VR EEA+ L + Sbjct: 156 VAPGSLCREINLLHAVLESVRRRVGLVDN-PVSHVRRPKVNDERDVRLSLDEEAQLLSAL 214 Query: 196 DECPEP-LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDT 254 D P +K V AL T +R+ ++ L W+ +D+ ++ A + E+K+ + V L+ Sbjct: 215 DATRNPWIKPFVIVALETAMRRGEMLALRWEHVDLVQQTAHL--PETKNGKGRTVPLSSR 272 Query: 255 ACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDS-KTSWLSACRRAGIEDFRF 313 A K L +A R+ G AV + +DS K +W A RAG+ F Sbjct: 273 AVKTL---------------EALPRSIGG---AVFPVSLDSLKHAWTRARDRAGLHHFHL 314 Query: 314 HDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHL 352 HDLRH S L + G + L + G + ++M++RY +L Sbjct: 315 HDLRHEATSRLAERGWNILELAAVTGHQDLQMLKRYTNL 353 >UniRef50_A5CFJ0 Phage-related integrase n=19 Tax=Orientia tsutsugamushi RepID=A5CFJ0_ORITB Length = 442 Score = 67.8 bits (164), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 88/389 (22%), Positives = 158/389 (40%), Gaps = 79/389 (20%) Query: 50 KLGDLPDVTFEEACLRWLEEKAD-KKSLDSDKSR--------------------IEFWLE 88 K+GD PD+T EA + + K D K ++ R + F Sbjct: 65 KIGDFPDLTVAEARKKIQQLKRDIAKGINPMDERRKINKERREKREKRLKLKNELTFRQV 124 Query: 89 HFEGIRL--------KDISE-AKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPK 139 H + K SE KIY+A ++N+K EI K+ +Q + Y Sbjct: 125 HEKYTEYSSHHHRSWKRTSERVKIYAAF--LYNKKISEITKEDIQKIFDEITARKHY--- 179 Query: 140 PVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNK-RVRWLEKEEAKRLIDEC 198 A ++ M + + +W ++K PV I + + R R++ EE +RL+ Sbjct: 180 -----VTANNILMNLSPIFNKAIEWGLIDKNPVHGIKRHKQESRSRYVTNEEMERLMKVL 234 Query: 199 PEPLKS---------------VVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKS 243 E S + AL T R NI+ + W +I + ++ + +SK+ Sbjct: 235 VEKENSQLTEEQKQSKISETLFLFIALFTAARSGNILAMRWDEISLSEKIWCIPKTKSKN 294 Query: 244 NRAIGVALNDTACKVLRD-QIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSA 302 + + + L D VL++ ++ +W+ K + +ST +W Sbjct: 295 GKQLYIGLADKLIAVLQNRKLCSKSEWILPSVKDNSKHISSSTI---------HRAWAKI 345 Query: 303 CRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRY-------AHLAPN 355 ++AGI + HDLR T+A+W+I +G + + ++ G + + Y A +A N Sbjct: 346 RKKAGIPNVTIHDLRRTFATWMINNGETVDTISQILGHSNTNTTKIYIIHSLAMAKIATN 405 Query: 356 HLTEHARKIDDIFGDNVPNMSHSEIMEDI 384 + E+ + IFG PN+ +EI+ I Sbjct: 406 KVVENMLR---IFG---PNVCLNEILSGI 428 >UniRef50_A7HE51 Phage integrase family protein n=3 Tax=Myxococcales RepID=A7HE51_ANADF Length = 451 Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 101/402 (25%), Positives = 163/402 (40%), Gaps = 80/402 (19%) Query: 16 LPGGKRIKESLGT-KDKRQAQELHDKRKAELWRVEKLGDLPD-----------VTFEEAC 63 +PG R++ G K RQ +R + W V+ + LPD V+ + A Sbjct: 14 VPGCPRLESGQGGRKLGRQRCAPGCERVTDGWEVDLVLRLPDGTPIRERVKAPVSGKSAA 73 Query: 64 LRWLEEKADK----KSLDSDKSRI---------EFWLEHFEGIRLKDISEAKIYSAVSRM 110 LRW +E+ + K ++R+ F H + RLK S A+ Y +V R Sbjct: 74 LRWAQEREGQILAQKGRKPRQARVVPTLAEFKPRFIEGHVKANRLKP-STAEAYESVFRT 132 Query: 111 HNRKT------KEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDW 164 H T I + VQ R EL E ++ ++ L + +L+ A DW Sbjct: 133 HLEPTFGSLRLDAIGDELVQ---RFKGELVEDE---MANKSINNVLTALSVMLKRAV-DW 185 Query: 165 KWLEKAP---------VIKIPAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLR 215 K ++ P ++++P R+L + A ID E L V GLR Sbjct: 186 KVIDAMPCRIRLLKWELVEVPFYDFAEYRYLVEGAAA--IDPRIELL---VLLGGDAGLR 240 Query: 216 KSNIINLEWQQIDMQRRVAWVN----------PEESKSNRAIGVALNDTACKVLRDQIGK 265 + I LEW +D++RR V P+ +S R + L + + LR + Sbjct: 241 RGETIALEWTDVDLRRRTVHVQRSSWNGHVTLPKGGRSRR---LPLTERLAEALRSH--R 295 Query: 266 HHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGI--EDFRFHDLRHTWASW 323 H K V DG ++P +++R+ W+ +R + +H LRHT+ S Sbjct: 296 HLKGPRVLYY-----DGGASPTNKEIRM-----WVQRAQRRAVLPATGAYHILRHTFCSH 345 Query: 324 LIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKID 365 L G +QE+ G + + +RY HL+P H R +D Sbjct: 346 LAMQGATAKAIQELAGHQDLTTTQRYMHLSPAHKDAAIRLLD 387 >UniRef50_B8J4X3 Integrase family protein n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8J4X3_DESDA Length = 398 Score = 67.4 bits (163), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 98/207 (47%), Gaps = 25/207 (12%) Query: 173 IKIPAVRNKRVRWLEKEEAKRLIDECPEP----LKSVVKFALATGLRKSNIINLEWQQID 228 ++P + N + L KEE R I+ ++ A TG+R++ + L+W ID Sbjct: 195 FEMPKLNNVKTEMLTKEERARFIEAAKAAPNRKAGQLMLMAYYTGMRRNELFGLKWAHID 254 Query: 229 MQRRVAWVN-----PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGT 283 + ++N E +KSNR + L+ ++L + ++VF DG Sbjct: 255 FEH--GFINIVGEKQEGAKSNRDERIPLSPPVRELLAEVGDNGSEYVFPGK------DGR 306 Query: 284 STPAVRKMRIDSKTSWLSACRRAGI-EDFR-FHDLRHTWASWLIQSGVPLSVLQEMGGWE 341 S R + ++ + + + A AG+ +DFR H LRHT+AS + +GVPLS +Q++ + Sbjct: 307 S----RMIDMNKQVNAIKAA--AGLPKDFRPLHGLRHTFASVAVSNGVPLSHVQKLLTHK 360 Query: 342 SIEMVRRYAHLAPNHLTEHARKIDDIF 368 + +RYAHL L A + + Sbjct: 361 DPTLTQRYAHLEDEALKNAANMVGNFL 387 >UniRef50_A1B6Q9 Phage integrase family protein n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1B6Q9_PARDP Length = 393 Score = 67.4 bits (163), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 54/181 (29%), Positives = 84/181 (46%), Gaps = 27/181 (14%) Query: 181 KRVRWLEKEEAKRL--IDECP--EP-LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAW 235 KR R+L +E RL + +C EP + ++ L TG R S I L+W+ +D R Sbjct: 197 KRERYLTPDELARLGKVLDCATEEPEAANCIRLLLLTGCRLSEIQTLKWRYVDY--RNGL 254 Query: 236 VNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMR--- 292 + +SK+ + V + A KVL K + DG +M Sbjct: 255 LRLPDSKTGAKL-VPIGKAAIKVL---------------KTIPKIDGNPYVITGRMEGQH 298 Query: 293 -IDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAH 351 D + W +RAG++D R HDLRH++AS +Q G L+++ + G ++ RYAH Sbjct: 299 LTDMQKPWRRLRKRAGLDDLRIHDLRHSFASDALQLGQDLTMIGRLLGHTQVQTTARYAH 358 Query: 352 L 352 L Sbjct: 359 L 359 >UniRef50_B0PGN2 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0PGN2_9FIRM Length = 526 Score = 67.4 bits (163), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 61/252 (24%), Positives = 106/252 (42%), Gaps = 24/252 (9%) Query: 143 TQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKRVRWLEKEEAKR-LIDECPEP 201 + + H A A+ +A + A K+P R + ++ L +EE +R LI E Sbjct: 147 SMVRGLHAACRSALEKAVQEGLIRTNPAVGCKLPPKRGREMQVLGREELQRFLIQAQAEG 206 Query: 202 LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRD 261 + L TGLR+ ++ L+W +D + VN + + + V++ T + R Sbjct: 207 YFELFLLDLCTGLRRGELLALQWDDLDFRTGALTVNKQVYEVKGRLQVSVPKTRASIRRL 266 Query: 262 QIGKH-------------HKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGI 308 + +W+F + + D TP + R+ RAG Sbjct: 267 VLPPGVVEVLRAYRETVDSRWMF---PSPVKEDVPMTPGAVRRRLQI------ILERAGC 317 Query: 309 EDFRFHDLRHTWASWLIQSGVPLSVLQEM-GGWESIEMVRRYAHLAPNHLTEHARKIDDI 367 + RFHDLRHT+A+ +++G+ + L M G + + Y H+ + +E A KID Sbjct: 318 KRIRFHDLRHTFATLSLENGMDVKTLSAMLGHVSAATTLDIYTHVTGDMQSEAAAKIDRG 377 Query: 368 FGDNVPNMSHSE 379 G+ V S E Sbjct: 378 LGNEVREESAQE 389 >UniRef50_A8L4Q7 Integrase family protein n=9 Tax=Actinomycetales RepID=A8L4Q7_FRASN Length = 477 Score = 67.4 bits (163), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 63/235 (26%), Positives = 100/235 (42%), Gaps = 17/235 (7%) Query: 151 AMIKAILRAAER-DWKWLEKAPVIKIPAVRNKRVRWLEKEEAKRLIDEC-PEPLKSVVKF 208 ++I+ L AER D A +K P ++ VR L EEA+RL++ E L++V Sbjct: 223 SLIRNALAEAERLDLVARNVAKAVKAPPTPHREVRALRPEEARRLVEVLRGERLEAVFAC 282 Query: 209 ALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHK 268 L GLR+ I+ L W +D+ V + + ++ T R I Sbjct: 283 GLMLGLRRGEILGLRWSDVDLDGATLHVRQTLQRVDGSLMFVPAKTERSHRRLPIPPKLV 342 Query: 269 WVFVHTKAAKRADGTS-------TPAVRKMRIDSKTSWLSACRR-------AGIEDFRFH 314 + +A + A+ T T V I + + RR AG+ R H Sbjct: 343 TILRRHRATQTAERTGLGDAWTETGLVFTSSIGTPLEPRNVNRRFDVLRRQAGLPWLRLH 402 Query: 315 DLRHTWASWLIQSGVPLSVLQEMGGWESIEM-VRRYAHLAPNHLTEHARKIDDIF 368 DLRH +AS L GVP + E+ G +I++ + Y H+ P + ++D IF Sbjct: 403 DLRHAFASMLFAEGVPARTVMELLGHSTIQLTMNTYTHVMPETQRDAVGRLDRIF 457 >UniRef50_Q1K2Z6 Phage integrase n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K2Z6_DESAC Length = 328 Score = 67.4 bits (163), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 20/154 (12%) Query: 200 EPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVL 259 + K + FAL T +R+ I L WQ I++++R A + ++K+ A V L+ A +L Sbjct: 184 DDFKPAIAFALETAMRREEIATLTWQNINLEKRTAHL--PKTKNGSARTVPLSTAAIGIL 241 Query: 260 RDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHT 319 + + VF TK KR +MR + +RAG++D RFHDLRH Sbjct: 242 KALPRQLDGQVFALTK--KR-------ITDRMR--------TTVKRAGLKDLRFHDLRHE 284 Query: 320 WASWLIQSG-VPLSVLQEMGGWESIEMVRRYAHL 352 S + G + + + + G +++ M+ RY HL Sbjct: 285 ATSRFFERGTLDMMEISRITGHKTLSMLSRYTHL 318 >UniRef50_C9Q2Y3 Integrase n=1 Tax=Vibrio sp. RC341 RepID=C9Q2Y3_9VIBR Length = 317 Score = 67.4 bits (163), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 63/231 (27%), Positives = 107/231 (46%), Gaps = 34/231 (14%) Query: 141 VSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKR--VRWLEKEEAKRLIDEC 198 VS T + + ++A+ +R + P+ KI R +R+L +E RL+++C Sbjct: 104 VSLTTVNREHSYLRAVFNELDRLGVITYENPLTKIRQFREAEGELRFLSHDEIARLLEQC 163 Query: 199 P----EPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDT 254 + L VVK LATG R NL+ QI +V ++N +SK NR + + Sbjct: 164 KVSTNKSLIHVVKICLATGARWGEAENLKPSQI-ANGKVTFLNT-KSKKNRTVPIN---- 217 Query: 255 ACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIE---DF 311 ++L +++ + + + +M + S ++ +A RA IE Sbjct: 218 --QILFNELEELEPF-----------------SNSRMFVGSLAAFRTALSRADIELPAGQ 258 Query: 312 RFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHAR 362 H LRHT+AS + G + L+++ G + I RYAHLAP+HL + R Sbjct: 259 NTHVLRHTFASHYVMGGGNIVKLRDVLGHKEITTTMRYAHLAPDHLEDALR 309 >UniRef50_B5H9T3 TraSA integrase fusion protein n=4 Tax=Streptomyces RepID=B5H9T3_STRPR Length = 372 Score = 67.4 bits (163), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 64/241 (26%), Positives = 100/241 (41%), Gaps = 33/241 (13%) Query: 153 IKAILRAAERDWKWLEKAPVI--KIPAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFAL 210 + A+ RAA RD + + P K+P+V K++ L E+ + L DE P K +V Sbjct: 131 VNAVFRAAVRD-RMIPHNPCAEAKLPSVPRKKIVPLAVEQVRTLSDEIPARYKGLVLLGA 189 Query: 211 ATGLRKSNIINLEWQQIDM---------------QRRVAWVNPEESKSNRAIGVA--LND 253 ATGLR + L+ + +D+ + V P+ ++S+R + + D Sbjct: 190 ATGLRPGELFGLQLRHVDLLHATVSVEQQIQQTAKHGVYVCPPKTARSHRTVPLPRMAVD 249 Query: 254 TACKVLRD-QIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGI-EDF 311 LRD W+F + P V +D SW AC +AGI + Sbjct: 250 AMKAHLRDFPADGPEGWIFTAPQGG--------PVVYTHFMDG--SWRPACAKAGIPKGT 299 Query: 312 RFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRR-YAHLAPNHLTEHARKIDDIFGD 370 H LRH +AS LI+ G + + E G + M Y HL P+ +D + D Sbjct: 300 GPHALRHHYASLLIRHGESVKTVSERLGHTNAAMTLNIYTHLWPDSEERTRAAVDKAYAD 359 Query: 371 N 371 Sbjct: 360 Q 360 >UniRef50_B8F8V6 Integrase family protein n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8F8V6_DESAA Length = 391 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 59/230 (25%), Positives = 111/230 (48%), Gaps = 28/230 (12%) Query: 138 PKPVSTQTKAKHLAMIKA----ILRAAERDWKWLEKAPVIKIPAVRNKRVRWLEKEEAKR 193 P V + + H + KA I+ A + K + + + + +N R R L EE + Sbjct: 148 PATVDMELRIAHTMINKAFDNDIITEASKVLKAFRRTKKL-LKSGQNARDRLLSMEEYIK 206 Query: 194 LIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALND 253 L + LK ++ A TG+R+ I+ L+W ID ++ ++ EE+K + + L++ Sbjct: 207 LHEAAGSHLKEIIAIAFFTGMRRGEILGLKWPHIDFNMKMIRLSAEETKEAKPKSIPLSE 266 Query: 254 TACKVL-RDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGI---- 308 A ++L + + K K VF++ P ++R T+ +AC +AGI Sbjct: 267 KAMEILEQKKRPKKEKHVFLY---------RGKPITTRVR----TALWNACDKAGISYGR 313 Query: 309 ---EDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPN 355 F FHDLR T + ++++GV V++++ +++ + RY +L PN Sbjct: 314 KQENGFVFHDLRSTVKTNMLRAGVD-KVMRDIILGHALKGMDRY-YLKPN 361 >UniRef50_B7I3I8 Integrase n=4 Tax=Acinetobacter baumannii RepID=B7I3I8_ACIB5 Length = 328 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 86/352 (24%), Positives = 148/352 (42%), Gaps = 61/352 (17%) Query: 1 MSLFR-RNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTF 59 M+ FR RN W A S+ G I+ES K QA+ KR+ +L R + G LPD +F Sbjct: 1 MASFRQRNNTWRAEISVNG---IRESSTFDTKAQARAWASKRETQL-REQSHGKLPDHSF 56 Query: 60 EEACLRWLEE-KADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEI 118 EA R+L E KK+ +++ R+ F+ ++ + K +++ V Sbjct: 57 LEAIERYLSEVSVKKKTHENEVKRMAFFKREYKKLCQKQLAKVTTDDLVQ---------- 106 Query: 119 WKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKIP 176 W+ K V T + ++ ++ A ++WKW++++P+ + +P Sbjct: 107 WRDS--------------RLKEVQGATVRREANILASLFTVARKEWKWIKESPMADLTLP 152 Query: 177 AVRNKRVRWLEKEEAKRLID----ECPEPLKSVVK------FALATGLRKSNIINLEWQQ 226 R R + ++E RL + P+ S + FA+ T +R I+ L W + Sbjct: 153 PPSKHRDRRIAQDEIDRLCLAANWDNNVPVNSTQQIIIAFLFAIETAMRAGEIVGLTWDR 212 Query: 227 IDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTP 286 + ++ R +N E+K+ V L+ A ++L G K VF T ++ D Sbjct: 213 VYLKDRYLVLN--ETKNGTKRNVPLSKRAVELLTLLKGLDKKQVF--TCNSQSFD----- 263 Query: 287 AVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMG 338 T W R I D FHD RH + L + L + + +G Sbjct: 264 ----------TLWRKLRDRCQITDLHFHDTRHEACTRLARKLEVLDLARMIG 305 >UniRef50_A1VPL3 Phage integrase family protein n=1 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VPL3_POLNA Length = 331 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 77/295 (26%), Positives = 119/295 (40%), Gaps = 62/295 (21%) Query: 78 SDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQA------------ 125 S S + +LEH +G+R SA + H+ W +K +A Sbjct: 60 SMSSMLGIYLEHAKGLR----------SATTSAHHALRLGPWAEKYKASQAREFAAHVIK 109 Query: 126 ---AIRKG---KELPVYEPKPV--STQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPA 177 A++KG K P Y P + S T K LA+ A E + IK + Sbjct: 110 DMGALQKGPDGKLKPAYAPATINRSLATAKKGLAL------AWESNLIPENYGLRIKSLS 163 Query: 178 VRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVN 237 V NKR +L ++ +++ C E ++ + AL TG R+ I + + I + + Sbjct: 164 VNNKREVFLSVDQVRQITQHCTEQAQAAIWAALLTGARRGEIFQIRAEHIKENEIIVPAS 223 Query: 238 PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKT 297 ++ +R I + LR W VH DG K+ Sbjct: 224 HTKTLRSRVIPI------IPALRP-------W-LVHFPLTMTIDGV------------KS 257 Query: 298 SWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHL 352 SW A +A +E FHDLRH+ AS LI GV L + ++ G + + +RYAHL Sbjct: 258 SWRRARVKADMEHVNFHDLRHSCASILIALGVDLYTVSKILGHSNTQTTQRYAHL 312 >UniRef50_B5ZXT1 Integrase family protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2304 RepID=B5ZXT1_RHILW Length = 368 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 99/393 (25%), Positives = 159/393 (40%), Gaps = 88/393 (22%) Query: 10 WYASYSLPGGKRIKE-SLGTKDKRQAQELHDKRKAELW----RVEKLGDLP--DVTFEEA 62 WY + G +R K +LGT D +A KR+ + W R+ DL DVT +E Sbjct: 25 WYRCFYEDGTRRTKRVTLGTDDYEEA-----KRRLDAWYMDQRMRIAQDLSPTDVTLKEV 79 Query: 63 CLRWLEEKA-DKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQ 121 +L+ A + +S +S K + +W EH W + Sbjct: 80 FKDYLDNHAVNLRSYESVKILLRYWEEH-----------------------------WGE 110 Query: 122 KVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIK----------AILRAAERDWKWLEKAP 171 K A + V E + T AK LA+ AI RA +R+ + P Sbjct: 111 KASVADVRN----VIEQEKFRTALFAKGLAINSVNRTLEAGRAAIRRAFKRNV--ISAMP 164 Query: 172 VIKI-PAVRNK-RVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDM 229 ++I P R+K + R L EE +L EC + ++ + L TG R I L W+QID Sbjct: 165 FVEILPYERDKPKGRPLSVEEIGKLYAECADHMRLFMILMLGTGARNEAICTLTWEQIDF 224 Query: 230 QRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHH----KWVFVHTKAAKRADGTST 285 + + ++NP K + T +R+Q+ K + + + K+ + A Sbjct: 225 EAGLIYLNPPGRKQTSKRRPVVRMTP--FVREQLSKFNDREGRVLSFRGKSFRTAHQGIG 282 Query: 286 PAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGV-PLSVLQEMG----GW 340 AV + ++ K + S RHT A WL + GV P V ++G G+ Sbjct: 283 KAVGRAKLKGKVTPYS--------------FRHTVARWLRKEGVSPWEVGAQLGHKMPGY 328 Query: 341 ESIEMVRRYAHLAPNHLTEHARKIDDIFGDNVP 373 EM YA +P++L + A I+ + +P Sbjct: 329 NITEM---YASASPDYLEKAAEAIEKLLRTAIP 358 >UniRef50_A0LQG0 Phage integrase family protein n=2 Tax=Deltaproteobacteria RepID=A0LQG0_SYNFM Length = 415 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 65/241 (26%), Positives = 109/241 (45%), Gaps = 22/241 (9%) Query: 140 PVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKRVRWLEKEEAKRLID--E 197 P+ T L +++ I+ + I++P V N R L +E +L+D E Sbjct: 174 PLKPGTVKNVLELLRRIINFGVKKNLCTGAGFAIELPKVNNLRTEDLTPDELAKLMDAIE 233 Query: 198 CPEPL--KSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTA 255 E L +++K AL TG+R+ + L+W +D +R + + ++ I V N+ A Sbjct: 234 KDENLIAANLMKMALFTGMRRGELFRLKWSDLDFERGFIHIRGPKGGVDQTIPV--NEEA 291 Query: 256 CKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHD 315 K+L+ + +VF +R D +V K++ + + L RA H Sbjct: 292 RKILQSHRRTNSGFVFPGRGGHQRID--IHKSVNKIK---EAAGLPKGFRA------LHG 340 Query: 316 LRHTWASWLIQSG-VPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIFGDNVPN 374 LRH +AS L SG V L LQ + +S M +RYAHL + L R D+ G+ + Sbjct: 341 LRHAYASMLASSGKVDLYTLQRLLTHKSPTMTQRYAHLRDSAL----RNASDLAGEIITG 396 Query: 375 M 375 + Sbjct: 397 I 397 >UniRef50_D1TKI7 Integrase family protein n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1TKI7_9BURK Length = 438 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/151 (32%), Positives = 72/151 (47%), Gaps = 19/151 (12%) Query: 202 LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVL-- 259 ++ + A+ TGLR+S ++ LEW+ +D++ R V P SK R V +N A + L Sbjct: 273 VRPAIIVAINTGLRRSELLRLEWKSVDLKARTITVEPATSKVKRRRVVPMNREAYETLMA 332 Query: 260 -RDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRH 318 R Q+ KW V T R A+R++R W R A I DFRF D RH Sbjct: 333 WRRQV----KWARVFTDELGR-------ALREVR-----DWDEVKRAAQITDFRFMDTRH 376 Query: 319 TWASWLIQSGVPLSVLQEMGGWESIEMVRRY 349 A+ +I G +Q++ G M +RY Sbjct: 377 HTATRMINEGASQYHVQKILGHADSRMTQRY 407 >UniRef50_B0VN10 Putative phage integrase/recombinase n=1 Tax=Acinetobacter baumannii SDF RepID=B0VN10_ACIBS Length = 319 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/180 (28%), Positives = 84/180 (46%), Gaps = 22/180 (12%) Query: 165 KWLEKAPV--IKIPAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINL 222 +WL P+ IK P+ R R + EE + L+ ++ + AL TG+R S I NL Sbjct: 138 RWLSVNPLRDIKFPSESPHRERVISDEEIEILLPFLSTEMRYIFLIALQTGMRLSEICNL 197 Query: 223 EWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADG 282 +W++I + + ++ + +K+ RA V L+ A ++ + K +VF T Sbjct: 198 KWEKIRLSKN--YLILDLTKNGRAREVPLSSKAVEIFKSIGPKKQGYVFSITSD------ 249 Query: 283 TSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWES 342 D+ + A AG+E F FHD RHT A+ I +PL L +M GW + Sbjct: 250 -----------DATDEFRDAKLEAGLEGFTFHDSRHTAATK-IALRIPLLDLCKMFGWSN 297 >UniRef50_B9KV34 Phage integrase n=4 Tax=Rhodobacter RepID=B9KV34_RHOSK Length = 434 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 58/249 (23%), Positives = 103/249 (41%), Gaps = 25/249 (10%) Query: 138 PKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKI-PAVRNKRVRWLEKEEAKRL-- 194 PKP T +A + + + +W W P + N R R+L K+E RL Sbjct: 187 PKP--TPVRANRVGEVLRKMFNLAIEWGWRTDNPANGFFRRIENPRERFLSKDEIDRLAK 244 Query: 195 -IDECPEP-LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIG-VAL 251 +D + +++ + TG R + ++Q D++ W P + R + V + Sbjct: 245 ALDAAEDQRAAGIIRICMLTGARVGEVRQSRFEQFDLEH-CLWSKPAATTKQRRVHRVPI 303 Query: 252 NDTACKVLRDQ---IGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGI 308 ++ ++R + + K W+F G +R+ W+ + A I Sbjct: 304 SEDVSAIVRQRRLLVPKGSPWLFPGD-----VPGQPVKEIRRF-------WIRIQKEAQI 351 Query: 309 EDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIF 368 E R HDLRHT+AS L+ G L ++ ++ G ++ +RYAHL L + +F Sbjct: 352 EGVRIHDLRHTFASLLVSGGASLEMIGKLLGHTQMQTTQRYAHLMEGPLRAGVDAVASVF 411 Query: 369 GDNVPNMSH 377 P + H Sbjct: 412 RPK-PTLVH 419 >UniRef50_C1DF50 Phage integrase n=4 Tax=Pseudomonadaceae RepID=C1DF50_AZOVD Length = 399 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 88/395 (22%), Positives = 162/395 (41%), Gaps = 53/395 (13%) Query: 2 SLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDV-TFE 60 L+ RN IW+ + G+R++ES GT ++ +A++ R +L R EK+ + + ++ Sbjct: 8 GLYERNGIWHVD-KVVRGQRLQESTGTGNREEAEQYLIHRLEKL-REEKVYGIRRIRSWR 65 Query: 61 EACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 EA R+L E D S+ + +E + + + + + + + + Sbjct: 66 EAATRYLVEYKDMPSIGLAATYLEQLDPYIGDLPITHVDDESLAPYI------------R 113 Query: 121 QKVQAA-IRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWK------WLEKAPVI 173 K++ GK P P+ V+ L + +L R W+ WL+ P+I Sbjct: 114 DKLKPGRTSTGKVKPGVTPRTVNIA-----LEKVIRVLNLCARKWRDEEKRPWLDTVPMI 168 Query: 174 -KIPAVRNKRVRW-LEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQ----QI 227 K+ R++R + L EE L E P+ L+ + + + G R+ ++ L W Sbjct: 169 SKLDEKRSRRTPYPLSWEEQSLLFSELPDHLRRMALYKVNCGSREQEVVKLRWDWEIPVP 228 Query: 228 DMQRRVAWVNPEESKSNRAIGV--------ALNDTACKVLRDQIGKHHKWVFVHTKAAKR 279 ++ V + + ++ GV LN A V+ Q G WVF + + Sbjct: 229 ELDTSVFLIPSDFGGRDKGSGVKNGEERLVVLNTVAKSVIEGQRGLDPTWVFPYGMPDR- 287 Query: 280 ADGTSTPAVR-------KMRIDSKTSWLSACRRA---GIEDFRFHDLRHTWASWLIQSGV 329 +G +TP R K R+ + + R G R HDL+HT+ L +GV Sbjct: 288 -NGKATPVHRMNDSAWKKARVRAAKKYQERFLRPAPKGFASIRVHDLKHTFGRRLRAAGV 346 Query: 330 PLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKI 364 + + G ++ + Y+ L + A KI Sbjct: 347 TEEDRRALLGHKNGSITSHYSAAELGKLIDEANKI 381 >UniRef50_C6XR20 Integrase family protein n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XR20_HIRBI Length = 402 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 81/293 (27%), Positives = 126/293 (43%), Gaps = 42/293 (14%) Query: 89 HFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAK 148 H ++LK+++ I + +S++ N + K K +GK + V KP + + Sbjct: 134 HLGKVKLKELNTTHISNFMSKVANPDKIIVEKTK-----PRGKAV-VSGGKPTANRAHDI 187 Query: 149 HLAMIKAILRAAERDWKWLEKAPVIKIPAVRN-KRVRWLEKEEAKRLIDECPEPLKS--- 204 AM+ ++A L+K P + R K+ R+L + E +RL E + Sbjct: 188 LSAMLNHAVKAG-----LLDKNPAKNVAKFRTEKKERFLTEVEIQRLGQELRQAGSDGTN 242 Query: 205 -----VVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVL 259 +K + TG RKS I++L W+ ID QR +A N +SK N + L +L Sbjct: 243 TYAIEALKVLMFTGARKSEILSLRWEYIDWQRSLA--NLPDSK-NDMKSIVLPSVVISIL 299 Query: 260 RDQIGKH-HKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRH 318 + K + WVF G ++K+ W A + D R HDLRH Sbjct: 300 NNLPNKGTNGWVFPSNDGNTHFTG-----LQKI-------WNRIRTNANLRDVRIHDLRH 347 Query: 319 TWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHA-----RKIDD 366 T+AS G L +L + + +RYAHLA + L HA KIDD Sbjct: 348 TFASVGAAEGKSLYILGKALTHANPATTQRYAHLADDPL-RHAVEAISNKIDD 399 >UniRef50_A6G3E1 Phage integrase n=2 Tax=Plesiocystis pacifica SIR-1 RepID=A6G3E1_9DELT Length = 398 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 67/227 (29%), Positives = 100/227 (44%), Gaps = 25/227 (11%) Query: 140 PVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKRVRWLEKEEAKRLIDECP 199 P QT +HL ++ I A++ WK + + P I + R +L+ +E + + Sbjct: 139 PFQPQTVNQHLKVLGRIFTVAKK-WKLVREVPEIVLLKQRKSDFDFLDFDETEAFLTGTA 197 Query: 200 EPL---KSVVKFALATGLRKSNIINLEWQQ-IDMQRRVAWVNPE--------ESKSNRAI 247 E L + + A+ TGLR +I L W++ ID+QR VN +KS++ Sbjct: 198 EHLPDWHTYMVVAVRTGLRVGEMIALRWREDIDLQRGRISVNQSWSVENGFTSTKSDKRR 257 Query: 248 GVALNDTACKVLRDQ-IGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRA 306 + L A L Q + K VF A + GT A ID T L Sbjct: 258 ELPLTWDARDALEAQRVRVQGKLVFPREGAPTHSAGTVQYA-----IDKITEALE----- 307 Query: 307 GIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLA 353 + H LRHT+AS + GVP+ +QE G +SI RYAHL+ Sbjct: 308 -MRHLHNHVLRHTFASHAVMRGVPMRQVQEWLGHQSITTTMRYAHLS 353 >UniRef50_A0AGT2 Complete genome n=7 Tax=Bacilli RepID=A0AGT2_LISW6 Length = 386 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 79/337 (23%), Positives = 143/337 (42%), Gaps = 66/337 (19%) Query: 51 LGDLPDVTFEEA----CLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSA 106 L +TFEE + W E++ ++ ++ + E +E+F +R++DIS I Sbjct: 65 LSSASQMTFEEFYRIRFVNWYEKQVKSQTFENAQFIFEKKMEYFYRMRIRDISSQDI--- 121 Query: 107 VSRMHNRKTKEIWKQKV-QAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWK 165 E W ++ Q A R ++ E +S + L ++ IL A ++ Sbjct: 122 ----------EDWMHELSQTATRNSRKQE--EITTLSRTYINRILGHLRIILNRAVKE-G 168 Query: 166 WLEKAPVIKIPAV--RNKRVRWLEKEEAKRLIDECPEPL------KSVVKFALATGLRKS 217 +E+ PV + N +V + E EE ++++ PE K + + TGLR Sbjct: 169 LIERNPVDSVSYFPKENNKVEFWEIEEFQKVMAMIPENSIQNQHRKIIYEMLFYTGLRIG 228 Query: 218 NIINLEWQQIDMQRRVAWV---------------NPEESKSNRAIGVALNDTACKVLRDQ 262 + L W+ ++ ++ V P+ +KS R I + T K L+ Sbjct: 229 ELQALSWENVNFEKNQITVEKTLIYQGKNDWYFSTPKTNKSYRTISIG--KTLSKRLK-- 284 Query: 263 IGKHHKW-----VFVHTKAAKRADGTSTPAVRKMRIDSKTSWL-SACRRAGIEDFRFHDL 316 KW + + + + DGT TP+ S ++WL + R+AG+ + H L Sbjct: 285 -----KWQELQRMIGNFEYMSQLDGTFTPSY------SFSNWLKDSARKAGVIPIKLHAL 333 Query: 317 RHTWASWLIQSGVPLSVLQEMGGWESIEM-VRRYAHL 352 RH+ + LI + V+QE G +I++ + Y HL Sbjct: 334 RHSHVALLIDQNIQPLVIQERLGHANIQITLGTYGHL 370 >UniRef50_Q88KJ3 Integrative genetic element Ppu40, integrase n=1 Tax=Pseudomonas putida KT2440 RepID=Q88KJ3_PSEPK Length = 274 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 58/231 (25%), Positives = 102/231 (44%), Gaps = 28/231 (12%) Query: 136 YEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKRVRWLEKEEAKRLI 195 +E S T + L+++ +L+ A + WL P + R+RW+ EE ++ Sbjct: 33 FEDLGNSGSTVNRKLSLLSMVLKTAV-NHNWLLSVPRMIRRKEGKHRIRWMNTEEEGNVL 91 Query: 196 DECP----EPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVAL 251 C L + A+ TG R++ ++ L D Q + + ++K+ A + Sbjct: 92 KACQHLGLNCLHDFIIVAVDTGFRRAELLGLSAP--DFQEGMIHLYAGQTKNGDARAIPA 149 Query: 252 NDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIED- 310 ++L H + + + T +G + ++R W + G+E+ Sbjct: 150 TSRVARIL------HRRRMNLTT-----FEGLTVSSLRH-------QWATLRAYMGMEED 191 Query: 311 --FRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTE 359 F H LRHT AS L+Q GVPL+ +Q G ++I RYAHLAP +L + Sbjct: 192 PQFIVHMLRHTCASRLVQRGVPLASVQHWMGHKNINTTLRYAHLAPENLMQ 242 >UniRef50_Q21U03 Phage integrase n=4 Tax=Burkholderiales RepID=Q21U03_RHOFD Length = 339 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 61/216 (28%), Positives = 95/216 (43%), Gaps = 25/216 (11%) Query: 141 VSTQTKAKHLAMIKAILRAAERDWKW-LEKAPVIK--IPAVRNKRVRWLEKEEAKRLIDE 197 V T LA+I + A +W +E++ ++K +P + R R L +E RL+ Sbjct: 118 VGRNTVRLELALIGHLCTVAISEWSLPIERSWIVKGLLPKPGDARSRRLVGDEETRLLAA 177 Query: 198 CPEP----LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALND 253 + L +K + TG+R + +LEW QID+++ ++ +K+ A V L Sbjct: 178 AEQSYALNLTLAIKLGILTGMRNGELTHLEWSQIDLEQHT--ISLSMTKNGDARVVPLFK 235 Query: 254 TACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRF 313 A ++LR + DG S ++ AC RA I D F Sbjct: 236 AAVELLR--------------AIPRPKDGGRLFEFHDSNGLS-AAFRRACERANIVDLHF 280 Query: 314 HDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRY 349 HDLRH AS L VP + L ++ GW S +M RY Sbjct: 281 HDLRHEAASRLAPH-VPATALCKLMGWRSFQMSLRY 315 >UniRef50_A4XMV7 Phage integrase family protein n=2 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XMV7_CALS8 Length = 332 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 70/275 (25%), Positives = 125/275 (45%), Gaps = 33/275 (12%) Query: 115 TKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLA-------------MIKAILRAAE 161 T++ ++Q ++ A+R P+ + KP+ Q LA ++ I + A+ Sbjct: 58 TQKRYRQLLKPALRAIGNKPLNKVKPLDIQNIYIALAGTQSNCTILKLHRLLHEIFKHAQ 117 Query: 162 RDWKWLEKAPVIKI-PAVRNKRVR--WLEKEEAKRLIDECP-EPLKSVVKFALATGLRKS 217 W+++ PV K+ P K+V W + E AKR ++ EP+ AL TG+R Sbjct: 118 M-WEYISDNPVKKVVPPTPEKKVFDVW-DVETAKRFLEIIKDEPIYYPALIALHTGMRAG 175 Query: 218 NIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACK---VLRDQIGKHHKWVFVHT 274 I++L+W ++ + RV + E K+ V L K + D + K K ++ T Sbjct: 176 EILSLKWCDVNFETRVISIVKSERKNRGLKTVNLKTKTSKRAVYMNDILYKELKNLYEIT 235 Query: 275 KAAKRADGTSTPAVRKMRIDSKTSWLS-----ACRRAGIEDFRFHDLRHTWASWLIQSGV 329 K + D P + + ++LS ++ RFHDLRHT+A+ ++ GV Sbjct: 236 KP--KPDDFVCPRLPTGNLT--VNYLSRKFKKLVKKHNFPLIRFHDLRHTFATLMLSLGV 291 Query: 330 PLSVLQEMGGWESIEMVR-RYAHLAPNHLTEHARK 363 ++ E+ G I++ Y+H+ P + E A K Sbjct: 292 NTKIVAEILGHSDIKLTADTYSHVLPT-MQEEAMK 325 >UniRef50_D2LJU9 Integrase family protein n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LJU9_RHOVA Length = 393 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 71/262 (27%), Positives = 117/262 (44%), Gaps = 30/262 (11%) Query: 104 YSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKH-LAMIKAILR-AAE 161 Y + R+H K + A IRK + + + T A H L+++ I+ A E Sbjct: 121 YGTIIRLH---LKPAFGATPIADIRK-TSVATFHARHAETPRNANHALSVLSKIMNWAEE 176 Query: 162 RDWKWLEKAPVIKIPAVR-NKRVRWLEKEEAKRLI--------DECPEP-LKSVVKFALA 211 + + E P I R KR R+L +E RL D+ +P + + ++ L Sbjct: 177 QGLRPAESNPCRNIRKYRETKRERYLSPDELARLGAALAAAEDDKTVDPYIIAAIRLLLL 236 Query: 212 TGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVF 271 TG R S I+ L W +D RR+ +N +SK+ + + LN A +L + + + F Sbjct: 237 TGARLSEILTLRWTYVDTYRRI--LNLPDSKTGAKV-IPLNQAALDLL-GTLPRLNSNPF 292 Query: 272 VHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPL 331 V R +G + ++ + W + AG++D R HDLRH++AS + G L Sbjct: 293 V---LVGRVEG-------QHLVNLQKPWRRIRKEAGLDDVRIHDLRHSFASVSVGLGGSL 342 Query: 332 SVLQEMGGWESIEMVRRYAHLA 353 V+ + G RYAH+A Sbjct: 343 PVIGRVLGHSQPATTARYAHVA 364 >UniRef50_B1M1F6 Integrase family protein n=2 Tax=Methylobacterium RepID=B1M1F6_METRJ Length = 396 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 96/376 (25%), Positives = 161/376 (42%), Gaps = 44/376 (11%) Query: 1 MSLFRRNEIWYASYSLP-GGKRIKESLGTKDKRQAQ--ELHDKRKAELW-RVEKLGDLPD 56 MS+++ Y + GG R + ++R+A+ E + RKAE R ++ Sbjct: 1 MSVYKPKGSPYFLFDFQRGGHRFYGTTQETERRRAEAIEQAEIRKAEAQVRRDRRSRGAP 60 Query: 57 VTFEEACLRWLEEK----ADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHN 112 +T + A +R+ E+ A + + + R+ W+ L+DI++ + V+R Sbjct: 61 MTIDIAAMRYWNERGMHTATARETERNLERLVEWIG--PNTPLQDITDDTLAQLVARRRG 118 Query: 113 RKTKEIWKQKVQAA--IRKGKEL-PVYEPKPVSTQTKAKHLAMIKAILRAAERDWK---- 165 + KV AA R GK L P+ P L ++ +L A + WK Sbjct: 119 -------QAKVNAARVKRPGKPLGPLGLVSPGQVNRSVTQL--LRRVLTRARKAWKVALP 169 Query: 166 ----WLEKAPVIKIPAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIIN 221 W E ++ P +RVR L EE RL + ++ FA TGLR+ + + Sbjct: 170 DEPNWTEH--MLTEP---RERVRELRHEEESRLEAVERDEYRAPRLFAQITGLRRREVTS 224 Query: 222 LEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRAD 281 L W+Q+D V V K + + + +L G+H VF + R Sbjct: 225 LTWRQVDFGAEVIRVI---GKGGKGHEIPITPELHLLLWPLRGQHETHVFTYRCQRTRLC 281 Query: 282 GTSTPAVRKMRIDSKT--SWLSACRR----AGIEDFRFHDLRHTWASWLIQSGVPLSVLQ 335 TS K +I T + + RR AG+ DFR HDLRHT A+ +++ L ++Q Sbjct: 282 PTSKRRFVKGQIYPITYHGFSTHVRRGLEKAGVADFRIHDLRHTSATRTLRATKNLKIVQ 341 Query: 336 EMGGWESIEMVRRYAH 351 ++ S+ + +YAH Sbjct: 342 KLLNHSSLSVTEKYAH 357 >UniRef50_Q2IHV3 Phage integrase n=1 Tax=Anaeromyxobacter dehalogenans 2CP-C RepID=Q2IHV3_ANADE Length = 387 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 70/260 (26%), Positives = 110/260 (42%), Gaps = 36/260 (13%) Query: 142 STQTKAKHLAMIKAILRAAERDWKWLEKAP----VIKIPAVRNKRVRWLEKEEAKRLIDE 197 S +T L + IL+ A +WK L P ++K+P +N + + ++ + +L+ Sbjct: 134 SAKTTNNVLVCLSVILKTAV-EWKRLPALPCRIRLVKVP--KNVKPDFYDEGQLAQLVAA 190 Query: 198 CPEPLKSVVKFALAT--GLRKSNIINLEWQQIDMQ------RRVAW---VNPEESKSNRA 246 E +V L GLR+ I LEW ID Q RR + V + + R Sbjct: 191 ASENTGDLVTVLLGADAGLRRGETIGLEWPDIDFQAGTLTVRRAVYRGVVGTTKGNAERV 250 Query: 247 IGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRK-MRIDSKTSWLSACRR 305 + + + LRD + H H + G + ++R M S+ + L A R Sbjct: 251 VPL------TERLRDALLAHR-----HLAGRRVLTGATDESIRSVMERLSRHAGLPAGTR 299 Query: 306 A--GIEDFR----FHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTE 359 G E R +H LRHT+ + L +GVP +Q + G SIE RY H++ E Sbjct: 300 MKRGKEVPRWAGLYHKLRHTFCTRLAMAGVPPRTIQALAGHVSIETTMRYMHVSARAPVE 359 Query: 360 HARKIDDIFGDNVPNMSHSE 379 R +D GD + SE Sbjct: 360 AIRALDAARGDVGETGTASE 379 >UniRef50_C6HVL4 Phage integrase family protein n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HVL4_9BACT Length = 351 Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 87/170 (51%), Gaps = 19/170 (11%) Query: 182 RVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEES 241 R R L E ++L + E +K +V AL TG+R+ +I+L +D+ +++ V +E+ Sbjct: 173 RERTLSLSEKEKLFEHLNEEMKQIVTLALETGMRRGELISLTISNVDLTKKI--VKLDET 230 Query: 242 KSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTS-WL 300 K+ + V L+ A L+ +G F DG + M D TS + Sbjct: 231 KNGDSREVPLSPAAVDTLKAVLGNKKIVGF---------DG----KLWTMGPDRVTSVFA 277 Query: 301 SACRRAGIEDFRFHDLRHTWASWLIQSGVPLS-VLQEMGGWESIEMVRRY 349 +A + AG++D RFHDLRHT A+ L +G+ + L ++ G + + MV RY Sbjct: 278 NAAKEAGLKDIRFHDLRHTAATKL--AGIYQAHELAKILGHKVLNMVMRY 325 >UniRef50_B9YYR1 Integrase family protein n=2 Tax=Proteobacteria RepID=B9YYR1_9NEIS Length = 433 Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 68/246 (27%), Positives = 100/246 (40%), Gaps = 43/246 (17%) Query: 116 KEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWL--EKAPVI 173 K +W V AA P E +PV L + I + +ERD + + E A ++ Sbjct: 147 KPVWGIGVSAA-------PFDEVRPV--------LLKLGLIGQGSERDRRLVGDEYARLL 191 Query: 174 KIPAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRV 233 K W E +A R + P V ++A+A R+ I+ + +D Q R Sbjct: 192 K----------WFENYDATRARELRMAP---VFRYAVAMAARRGEIVGILRSDVDRQART 238 Query: 234 AWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRI 293 V + N+ IG ND +L + W V + A D P I Sbjct: 239 VVVRNRKDPRNK-IG---NDQVLPLLGE------AWGIVEAQLASHDDLRVFP---YTEI 285 Query: 294 DSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLA 353 T + AC GIED FHDLRH S L ++G + + + G ++ M+RRY L Sbjct: 286 SISTCFQRACEVLGIEDLHFHDLRHEGTSRLFEAGYSIEQVALVTGHKTWNMLRRYTQLR 345 Query: 354 PNHLTE 359 P L E Sbjct: 346 PASLHE 351 >UniRef50_B1JDB3 Integrase family protein n=3 Tax=root RepID=B1JDB3_PSEPW Length = 340 Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 80/343 (23%), Positives = 139/343 (40%), Gaps = 73/343 (21%) Query: 40 KRKAELWRVEKLGDLP-----------DVTFEEACLRWLEE-KADKKSLDSDKSRIEFWL 87 K +A+ W E GD+ T +EA R+L E + KK ++ RI+ W Sbjct: 45 KAEAQRWAAEIEGDMSRARFVDMREAESTTLDEALDRYLSEVTSTKKGAKQEQVRIKKWK 104 Query: 88 EHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKA 147 EH +L A I S S M + E+ + K A +R Sbjct: 105 EH----KLASKGLAAIRS--SDMAAYRDAELKEGKSTATVRL------------------ 140 Query: 148 KHLAMIKAILRAAERDWK---WLEKAPVIKIPAVRNKRVRWLEKEEAKRLIDECPE---P 201 +LA+I + A ++W I++P +R R E L + Sbjct: 141 -NLAVISHLFTVATKEWGIEGLTNPCRAIRMPKGSKERDRRPTPAELTALYKAAGQMNAQ 199 Query: 202 LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRD 261 L ++ A+ T +R+S ++ L + + +VA++ E++K+ V L+ A +L Sbjct: 200 LPVFIELAVETAMRRSELLMLRRDHV--RGKVAYL--EDTKNGERRAVPLSSRAIALL-- 253 Query: 262 QIGKHHKWVFVHTKAAKRADGTSTPA----VRKMRIDSKTSWLS-ACRRAGIEDFRFHDL 316 +G TP + +++ +++ AC AGIE R HDL Sbjct: 254 -------------------EGLPTPIGGGRYFNLALNTISNYFPRACAAAGIEGLRLHDL 294 Query: 317 RHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTE 359 RH S + G + + + G +++ M++RY HL+P+ L E Sbjct: 295 RHEATSRFFERGFTMMEVASITGHKTLAMLKRYTHLSPHDLAE 337 >UniRef50_Q97JV3 Integrase/recombinase (XerD/xerC family) n=1 Tax=Clostridium acetobutylicum RepID=Q97JV3_CLOAB Length = 299 Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 73/265 (27%), Positives = 120/265 (45%), Gaps = 39/265 (14%) Query: 120 KQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVR 179 K+ + I+ G+ K +S + ++L K +L + + ++K + KIP Sbjct: 58 KKFINYLIKNGRAATTIRRKIISLKLFFQYLDQEKIVL---DNPFDKIDKRDLPKIP--- 111 Query: 180 NKRV-RWLEKEEAKRLIDECPEPL----KSVVKFALATGLRKSNIINLEWQQIDMQRRVA 234 KR+ + L EE KRLI+ K ++ L+TG+R S +I+L I ++ + Sbjct: 112 -KRLPKSLSIEECKRLINSVNSRNTIRDKCIIIIFLSTGMRLSELISLNVDNI-LEEEIR 169 Query: 235 WVNPEESKSNRAIGVALNDTACKVLRDQIGKH-----HKWVFVHTKAAKRADGTSTPAVR 289 + K N+ V L D A K+++ I + K +F+ + + A GT A+R Sbjct: 170 II----GKENKERVVYLTDQAKKIVKLYIKQRPKNLKTKALFLSERNGRIARGTVQNAIR 225 Query: 290 KMRIDSKTSWLSACRRAGIE---DFRFHDLRHTWASWLIQSG-VPLSVLQEMGGWESIEM 345 +A AGI+ D H LRHT+A+ L QSG V L LQE+ G E + Sbjct: 226 -----------NAMYNAGIKGDNDVLVHILRHTFATLLYQSGEVDLFQLQELLGHEDVST 274 Query: 346 VRRYAHLAPNHLTE--HARKIDDIF 368 R Y ++ L A ++ IF Sbjct: 275 TRIYTDVSKEQLKNAVEANPLNKIF 299 >UniRef50_A5EBE3 Putative phage related integrase n=1 Tax=Bradyrhizobium sp. BTAi1 RepID=A5EBE3_BRASB Length = 434 Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 86/369 (23%), Positives = 145/369 (39%), Gaps = 79/369 (21%) Query: 49 EKLGDLPDVTFEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSA-V 107 ++L + +TF E R+L E+A+ K + + + + KI +A + Sbjct: 92 DRLHERQSLTFSEFAERYLSEEAEPKLKPGTVANYRIAVRRHANPEIGKLKLHKISNADL 151 Query: 108 SRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILR-AAERDWKW 166 +R+H + K ST + L + +I R A D Sbjct: 152 ARLHTKIGK------------------------TSTVNANRTLECVSSIFRYAVTCDIVP 187 Query: 167 LEKAPVIKIPAVR-NKRVRWLEKEEAKRL---------------IDE-------CPEP-- 201 + P I A R N+R R+L +E RL IDE P+P Sbjct: 188 VGHNPTKGIRAFRENRRERFLNSDELARLGSAIREAETVGIPYEIDETKPTSKHAPKPEN 247 Query: 202 --------LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALND 253 + ++ + TG R I++L+W +D +R + + +SK+ R + LN Sbjct: 248 RRTKIDSYTAAALRLLILTGARLREILHLKWDYVDFERGLLLL--PDSKTGRK-AIVLNV 304 Query: 254 TACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRF 313 A VL K +F +++ D K R D W + RA ++ R Sbjct: 305 PALAVLSSLDRKGQYVIF-----SEQED--------KPRADLNRPWRTISARAKLQGVRL 351 Query: 314 HDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARK----IDDIFG 369 HDLRHT AS +G+ L ++ ++ G +RYAHL + L + + K I G Sbjct: 352 HDLRHTHASVGAGAGLGLPIIGKLLGHTQASTTQRYAHLDSDPLQKASNKIAASISAAMG 411 Query: 370 DNVPNMSHS 378 D+ +++ S Sbjct: 412 DDAGHVAQS 420 >UniRef50_B9KXE0 Transposase n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KXE0_THERP Length = 316 Score = 64.3 bits (155), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 62/239 (25%), Positives = 105/239 (43%), Gaps = 28/239 (11%) Query: 164 WKWLEKAPVIKIPAVRNKRV--RWLEKEEAKRLIDECPE-PLKSVVKFALATGLRKSNII 220 W L + P + R R+ R L E RL+ C + PL +V A+ +GLR ++ Sbjct: 76 WGLLGRNPCDLVDLSRASRLQLRALTAPEVARLLATCADDPLGPLVTVAVLSGLRLRELL 135 Query: 221 NLEWQQIDMQRR---------------VAWVNPEESKSNRAIGVALNDTACKVLRDQIGK 265 L+W ID +R + V P+ + S R V L+ A + LR Q Sbjct: 136 ALQWGDIDWERSEPSVVRSLQRVRGQGLVVVPPKTAASRRR--VPLSPLALEALRRQRRH 193 Query: 266 HHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTS---WLSACRRAGIEDFRFHDLRHTWAS 322 +W D T +VR + +D + + RAG+ RFHDLRHT AS Sbjct: 194 QVEWRLAAGPTWAEGDWVFT-SVRGVPLDPAETTRRFHRLLERAGLPHRRFHDLRHTTAS 252 Query: 323 WLIQSGVPLSVLQEMGGWESIEM-VRRYAHLAPNHLTEHARKIDDIFGDNVPNMSHSEI 380 L+ GV V+ + G ++++ + Y+ + P + A ++ + +++ +HS + Sbjct: 253 LLLADGVHPKVVASILGHSTVQVTLDVYSRVTPGLARQAAERLQQLVANSI---AHSAL 308 >UniRef50_A9VYK3 Integrase family protein n=2 Tax=Methylobacterium RepID=A9VYK3_METEP Length = 399 Score = 64.3 bits (155), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 75/267 (28%), Positives = 118/267 (44%), Gaps = 40/267 (14%) Query: 141 VSTQTKAKHLAMIKAILR-AAERDWKWLEKAPVIKIPAVRNKR--------VRWLEKEEA 191 S T + LA + + A E++W + PVI R KR R+L + E Sbjct: 117 ASAPTVRRDLACLSTVFGFAIEKEWADIN--PVIPFLRQRAKRGLRESPPRTRYLTRAEE 174 Query: 192 KRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVAL 251 RLI+ + + FA+ TGLR+ +L W+Q+D+ R+ ++ E +K R V L Sbjct: 175 ARLIESALPYVADAILFAIYTGLRQEEQFSLTWEQVDLARKHVTISAETAKGKRERTVIL 234 Query: 252 NDTACKVLRDQIGKHHK--WVFVH-----TKAAKRA-DGTST----PAVRKMRIDSKTSW 299 A VL+ +I +H + +VF H T+ A+RA TST R +D Sbjct: 235 LAPALAVLK-RIPRHLQSPFVFHHGAATTTRGARRALPSTSTKKDNDGERFNHLDR--GL 291 Query: 300 LSACRRAGIEDFRFHDLRHTWASWLIQSG--VPLSVLQEMGGWESIEMVRRYAHL----- 352 +A +RA + R+HDLR T L+Q V ++G ++ R YA L Sbjct: 292 RNAAKRAKVPLLRWHDLRRTHGCRLLQEEKWTLEMVRDQLGHRSVVQTERSYAFLEVEDR 351 Query: 353 -------APNHLTEHARKIDDIFGDNV 372 N T A++ID+ G+ + Sbjct: 352 RMAAHGPGTNPGTAAAQEIDNATGEPI 378 >UniRef50_A8GE25 Integrase family protein n=18 Tax=Enterobacteriaceae RepID=A8GE25_SERP5 Length = 428 Score = 64.3 bits (155), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 91/431 (21%), Positives = 172/431 (39%), Gaps = 77/431 (17%) Query: 9 IWYASYSLPGGKRIKESLGT----KDKRQAQEL--------------HDKRKAELWRVEK 50 IW+ L GKR++E+LG K+++ A EL ++KR V Sbjct: 17 IWF----LFQGKRVRENLGIPDTPKNRKAAGELRTSVCYEIKTGNFSYEKRFPNSRNVTI 72 Query: 51 LGDLPDVTFEEACLRWL---EEKADKKSLDSDKSRIEFWLEHFEGIR-LKDISEAKIYSA 106 ++T + +WL E + K +L S + R + +I + I A Sbjct: 73 NAARENITVNDIIKKWLNLKEMEVSKGTLYRYTSHCGVTASYLNPERKINEIRQEDILLA 132 Query: 107 VSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKW 166 RM + +K + ++R+G+ +P T ++ ++AI A + + Sbjct: 133 RKRMLTEPQQPKIHEK-RKSVRQGRAVP----------TVNSYMFCMRAIFDFAVSN-GY 180 Query: 167 LEKAPVIKIPAVRNKRVRW--LEKEEAKRLIDECP-EPLKSVVKFALATGLRKSNIINLE 223 + P + ++ +R L KEE +R+I CP + +++++ A+ TGLR + L Sbjct: 181 IANNPFEGVSPLKKQRPAPDPLTKEEYQRVIVSCPTQQMRNMITLAINTGLRHGELYALA 240 Query: 224 WQQIDMQ-------RRVA----WVNPEESKSNRAIGVALNDTACKVLRDQIG------KH 266 W+ +D Q R ++ + P+ R I L A + ++ Q+ H Sbjct: 241 WEDLDTQNWTISISRNLSLKEHFTLPKTDAGMRTI--QLTTVAIEAIKSQMALTRLSNAH 298 Query: 267 HKWVFVHTKAAKRADGTSTPAVRKMRIDSKT--------------SWLSACRRAGIEDFR 312 V + KR D + + RI S+ +W + R+AG++ + Sbjct: 299 RVTVNLREYGKKRTDDCT--FIFSPRITSRNGSSADWYSPGAFNGAWKTILRKAGVKHRK 356 Query: 313 FHDLRHTWASWLIQSGV-PLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIFGDN 371 ++ RHT+A W + G P V +MG + + Y + ++ F N Sbjct: 357 SYETRHTFACWALSCGANPNFVAHQMGHSSAQMLYNVYGKWMTENNDHQVNILNASFSQN 416 Query: 372 VPNMSHSEIME 382 P + H +I+ Sbjct: 417 APQVPHEQIIN 427 >UniRef50_Q11J21 Phage integrase n=1 Tax=Chelativorans sp. BNC1 RepID=Q11J21_MESSB Length = 476 Score = 64.3 bits (155), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 90/187 (48%), Gaps = 24/187 (12%) Query: 175 IPAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVA 234 +P V R+ +L +EE KRLI+ L+ ++ AL TG R ++ L+ + + Sbjct: 236 LPNVDRPRMVFLRREECKRLIEAARPDLRELILGALYTGCRVRELVYLKVADVGREGFGI 295 Query: 235 WVNPEESKSNRAI-----GVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVR 289 +V+P ++ R + G+A + C R + G H++VF + DG Sbjct: 296 YVSPSKNYRPRFVLLPEEGMAFFLSLC---RKRQG--HEYVF------RNQDGRPWSERY 344 Query: 290 KMRIDSKTSWLSACRRAGI-EDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMV-R 347 K T AC G+ + FH LRHT+AS L+Q+G+ LS++ + G I V R Sbjct: 345 KHLFRDLTD---AC---GLPKSTVFHSLRHTYASQLVQAGMQLSIVAKQLGHADIATVDR 398 Query: 348 RYAHLAP 354 Y HLAP Sbjct: 399 TYGHLAP 405 >UniRef50_A0LKH4 Phage integrase family protein n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LKH4_SYNFM Length = 348 Score = 64.3 bits (155), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 80/388 (20%), Positives = 156/388 (40%), Gaps = 64/388 (16%) Query: 1 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDL-PDVTF 59 MS++RR E+++ + G RI++S T ++ +A + + L V + +++ Sbjct: 1 MSVYRRGEVYWVDVKVKGHPRIRKSAATSERLKALDFEAALRRTLTGVVSHEPIRGEMSL 60 Query: 60 EEACLR-----WLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRK 114 EA R W +K+ K +S +E + IRLKDI E ++ V ++ + Sbjct: 61 SEAMARAFKVHWNHKKSAKTVGFHARSLLE---KLGNDIRLKDIGENEVRGLVRQLQSDG 117 Query: 115 TKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIK 174 S T L++++ +LR + +W+ +++ P Sbjct: 118 N--------------------------SAATINSKLSVLQTLLRMSCNEWRVIDRVPRFD 151 Query: 175 IPAVRNKRVRWLEKEEAKRLIDECPEPLK----SVVKFALATGLRKSNIINLEWQQIDMQ 230 + R+R L EE RL+ + + L TG S +++L+W+ +D+ Sbjct: 152 RLKEKEGRLRTLSPEEESRLLALLRRTGRHDAADLYMVLLDTGASLSEVLSLKWKGVDLV 211 Query: 231 RRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRK 290 ++ E + NR + + +L ++G G +P Sbjct: 212 GGKIGIDVESGR-NRIL--PMTRRVRSMLMQRMGM----------------GIKSPFSNV 252 Query: 291 MRIDSKTSWLSACRRAGIED---FRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVR 347 ++ +W ++ G+ F H LRHT+A+ +Q G+ L L+ + G +I + Sbjct: 253 TYQQAEYNWKWVRKQMGLGGDPGFVIHSLRHTFAARTVQRGIGLPALKALLGHSTIRLTE 312 Query: 348 RYAHLAPNHLTEHARKIDDIFGDNVPNM 375 RYA ++ R +D G V M Sbjct: 313 RYARFGAGNID---RAVDACSGGGVSGM 337 >UniRef50_UPI0001AEC0CD phage integrase n=1 Tax=Alteromonas macleodii ATCC 27126 RepID=UPI0001AEC0CD Length = 395 Score = 64.3 bits (155), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 90/191 (47%), Gaps = 22/191 (11%) Query: 174 KIPAVRNKRVRWLEKEEAKRLIDE----CPEPLKSVVKFALATGLRKSNIINLEWQQIDM 229 K+P V R R+L +EA +L+ + + + + AL TG R +N+ +EW+ I++ Sbjct: 198 KMPGV--TRSRYLTYQEAGQLMKALEYASNQDVADIYRMALFTGARLTNVKTMEWKDINL 255 Query: 230 QRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVR 289 V + +K+N+ + L+ A +LR + FV K G T Sbjct: 256 SNAVWLIPATRTKTNQIYEIPLHPLAVYLLRKRQKTCPSSHFVFPSKQKSKYGYIT---- 311 Query: 290 KMRIDSKTSWLSACRRAGIED------FRFHDLRHTWASWLIQSGVPLSVLQEMGGWESI 343 + W +A +RAG+ R HDLR T+A+W IQSG +SV+ + S+ Sbjct: 312 ----GGDSVWKAAIKRAGLYHDNPNIRPRPHDLRRTFATWQIQSGADVSVVSKALCHTSL 367 Query: 344 E--MVRRYAHL 352 + MV YA++ Sbjct: 368 KHTMVYAYANI 378 >UniRef50_A6U795 Phage integrase family protein n=39 Tax=Rhizobiales RepID=A6U795_SINMW Length = 343 Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 66/222 (29%), Positives = 97/222 (43%), Gaps = 28/222 (12%) Query: 142 STQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKRVRWLEKEEAKRLIDECP-- 199 S T + +A + +LR A + + P K + R+R+LE +E + L E Sbjct: 132 SNATINRKMAALGKLLRKAYKMGD-IHNLPEFKRQKEKAGRLRFLEADEEEVLFREIASR 190 Query: 200 -EPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKV 258 E + F + TG R I+L+W I R WV +KS R+ V L A Sbjct: 191 SELYLYLSIFLVDTGARLGEAIDLKWNDIHEGRATFWV----TKSGRSRTVPLTLRAKDA 246 Query: 259 LRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGI---EDFRFHD 315 L+ K AD + P R + + W +A AG+ ED H Sbjct: 247 LK-----------------KVADRSPGPFSRIDQQKFRAIWNAAKVDAGLGDEEDIVPHI 289 Query: 316 LRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHL 357 LRHT AS L++ G+ L +Q G +++EM RYAHLA + L Sbjct: 290 LRHTCASRLVRGGIDLRRVQMWLGHQTLEMTMRYAHLASHDL 331 >UniRef50_B5K290 Phage integrase n=2 Tax=Octadecabacter antarcticus 238 RepID=B5K290_9RHOB Length = 426 Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 49/214 (22%), Positives = 93/214 (43%), Gaps = 22/214 (10%) Query: 164 WKWLEKAPVIKIPA-VRNKRVRWLEKEEAKRL--IDECPEPLKS--VVKFALATGLRKSN 218 W W P V R R+L +EE RL + + E ++ +++ + TG R Sbjct: 211 WGWRTDNPATGFKKRVETARERFLSQEEIGRLAAVLDAAEDQRAAGIIRICMLTGSRVGE 270 Query: 219 IINLEWQQIDMQRRVAWVNPEESKSNRAIG-VALNDTACKVLRDQ---IGKHHKWVFVHT 274 + ++Q +++ + W P + R I + ++ ++R + + + + W+F Sbjct: 271 VRQARFEQFNLELCI-WSKPAATTKQRKIHRIPISADVAAIVRQRSVSVPRDNPWLF--- 326 Query: 275 KAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVL 334 G +R+ W++ R A + D R HDLRHT+AS L+ G L ++ Sbjct: 327 --PGDVPGQPVKEIRRF-------WINVQREANLPDVRIHDLRHTFASLLVSGGASLEMI 377 Query: 335 QEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIF 368 + G ++ +RYAHL + L + +F Sbjct: 378 GRLLGHTQMQTTQRYAHLMDSPLRAGVDAVAGMF 411 >UniRef50_C7HXJ3 Integrase family protein n=2 Tax=Thiomonas intermedia K12 RepID=C7HXJ3_THIIN Length = 329 Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 62/234 (26%), Positives = 101/234 (43%), Gaps = 34/234 (14%) Query: 141 VSTQTKAKHLAMIKAILRAAERDWKWLEKA--PV--IKIPAVRNKRVRWLEKEEAKRLID 196 +S Q+ HL + + AE++ A PV I+ PA R R L E L+ Sbjct: 98 LSAQSVIHHLNALSGLFSFAEKELSITLPAGNPVRGIRKPAKPRGRDRRLTAGELDYLLR 157 Query: 197 ECPE------PLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVA 250 L V+ A+ + +R ++ LEW +ID+Q+R A + ++K+ + VA Sbjct: 158 AARAARARIGGLPQVITLAVESSMRLGELLGLEWSRIDLQKRTAHLV--DTKNGESRTVA 215 Query: 251 LNDTACKVL----RDQIGKHHKW--------VFVHTKAAKRADGTSTPAVRKMRIDSKTS 298 L+ A L R G+ W + KA+ R + + +R D Sbjct: 216 LSSAAVATLQSLPRRIDGRVFGWAASDSFEKTWTRCKASARKLYEADCTAQGIRPDP--- 272 Query: 299 WLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHL 352 A + D RFHDLRH S L + G+ + + M G +S+ M++RY H+ Sbjct: 273 -------AFLADLRFHDLRHEATSRLFEKGLGVMEVASMTGHKSLSMLKRYTHI 319 >UniRef50_A4SIA1 Phage integrase family protein n=2 Tax=Gammaproteobacteria RepID=A4SIA1_AERS4 Length = 408 Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 81/327 (24%), Positives = 142/327 (43%), Gaps = 40/327 (12%) Query: 47 RVEKLGDLPDVTFEEA------CLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISE 100 R +G PDV A R L + D K L DK R E L +E +L + Sbjct: 64 RAIAIGRFPDVDLNTAREIATEYKRLLSQGIDPKQLKEDK-RQELTL--YELFQLHYLPY 120 Query: 101 AKIYSAVSRMHNRKTKEIWKQKV------QAAIRKGKELPVYEPKPVSTQTKAKHLAMIK 154 AK + + ++ ++ + + + + +G+ L T + ++K Sbjct: 121 AKHHKRSWQNDEQRFRDHLQPPMGSRLLSEINLEQGQALQTSLMSQCKPATNNRITTLLK 180 Query: 155 AILRAAERDWKWLEKAPVIKIPAV--RNKRVRWLEKEEAKRLI-----DECPEPLKSVVK 207 AIL + R +LE+ P++ + + N+R R+L+K E +RL DE VK Sbjct: 181 AILTWSVR-MGYLEQHPLVYLKTLPENNQRTRFLDKAEIRRLFMAADADEN-RYAGQYVK 238 Query: 208 FALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQ-IGKH 266 L TGLRK + +W+ ID + ++ +K+ ++ + +N A +VL+D + Sbjct: 239 LLLLTGLRKDELRLAKWEHIDKVHQTLFI--PHTKNGKSRILHMNHMAMQVLQDTPVIAG 296 Query: 267 HKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIE-DFRFHDLRHTWASWLI 325 + ++F K + + + P R ++ RA IE H RH+ A+ ++ Sbjct: 297 NAYLFPGQKPGQPLNNVTKPFNRMLK------------RAQIEGQVCIHTCRHSVAALIV 344 Query: 326 QSGVPLSVLQEMGGWESIEMVRRYAHL 352 SG L +Q G S + +RYAHL Sbjct: 345 SSGGTLYDVQAQLGHSSSQSSQRYAHL 371 >UniRef50_A5L0D6 Site-specific recombinase, phage integrase family protein n=1 Tax=Vibrionales bacterium SWAT-3 RepID=A5L0D6_9GAMM Length = 434 Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 59/239 (24%), Positives = 105/239 (43%), Gaps = 30/239 (12%) Query: 145 TKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKRV-RWLEKEEAKRL--------- 194 T ++L ++++I + A + ++ P + R +++ R+L +E RL Sbjct: 152 TANRNLDVLRSIFKYAVKQGYCIDN-PCDGLKQNRKRKLNRFLSLDELARLHKALTVVSQ 210 Query: 195 IDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDT 254 E V++ L TG R S + L+W + + W P+ + + V Sbjct: 211 QGELEACCCQVLELVLLTGCRISEVTGLQWSFVKGRE---WHLPDSKTGAKVVYVG--KE 265 Query: 255 ACKVLRD---QIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTS--WLSACRRAGIE 309 A ++L D Q+G H ++ D TP R + +K S W A IE Sbjct: 266 AQQLLSDIPQQVGAHR---------SESHDDVFTPLRRFVSRSTKVSMVWQQVRALAHIE 316 Query: 310 DFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIF 368 D R HDLRHT+AS+ + G P+ ++ ++ G I RYAH+ +++ A I ++ Sbjct: 317 DVRIHDLRHTFASYAVLEGYPIPMVSKLLGHTRISSTLRYAHVDDAQVSQSAEAIGEVI 375 >UniRef50_A1VGL4 Phage integrase family protein n=1 Tax=Desulfovibrio vulgaris DP4 RepID=A1VGL4_DESVV Length = 417 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 63/232 (27%), Positives = 100/232 (43%), Gaps = 33/232 (14%) Query: 141 VSTQTKAKHLAMIKAILRAAERDWKWLEKAPVI---------KIPAVRNKRVRWLEKEEA 191 +S K IK ++ R + EK +I ++P + N++ L E+ Sbjct: 170 LSLANSGKKPGTIKNVIELLRRIISFGEKKGLITPSQICAHFEMPILNNQKTEDLTPEQL 229 Query: 192 KRLIDECPEP----LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEE----SKS 243 LI ++ AL TG+R+ I NL+W+ ID R + + +KS Sbjct: 230 NNLIAAIESTKHKKAGQMMLLALYTGMRRGEIFNLKWEHIDWHRGFINIVGRDDGLGAKS 289 Query: 244 NRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSAC 303 + + LND A ++L ++VF + D +RK K Sbjct: 290 GQCERIPLNDLARQLLLSVPKGQSRYVFPGKSGGRLVD------IRKQADALK------- 336 Query: 304 RRAGIED-FR-FHDLRHTWASWLIQSG-VPLSVLQEMGGWESIEMVRRYAHL 352 + AG+ D FR FH LRH +AS L +G V + LQ++ +S M +RYAHL Sbjct: 337 KEAGLPDSFRPFHGLRHVYASLLASTGKVSMYELQKLMTHKSAAMTQRYAHL 388 >UniRef50_B6R5P1 Phage integrase n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R5P1_9RHOB Length = 365 Score = 63.9 bits (154), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 79/332 (23%), Positives = 145/332 (43%), Gaps = 53/332 (15%) Query: 56 DVTFEEACLRWLEEKADKK---SLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHN 112 D+T E C +LEE K ++ +DK RIE ++ G L VS + Sbjct: 58 DLTVAELCDLYLEEGTATKKASTIATDKGRIERHIKPVIGDLL-----------VSDIKA 106 Query: 113 RKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV 172 + + K+ + + + PV + K T ++ + ++ I A + + PV Sbjct: 107 NHVRTLLKKVAEGNLPREGVGPVAD-KLGGKGTASRTVGLLGGIFSFAN-ELGYRTDNPV 164 Query: 173 IKI---PAVRNKRVRWLEKEEAKRLID---------ECPEPLKSVVKFALATGLRKSNII 220 + P +N+R +L + E RL + P+ +K ++K TG R+ I Sbjct: 165 HGVKRFPDQKNQR--YLTQSELTRLFELLEEIEADGANPKAVK-IIKLLALTGARRGEIE 221 Query: 221 NLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKH---HKWVFVHTKAA 277 L+W ++ +++ ++ E+SK+ + + ++ +LR+ + +VF + Sbjct: 222 QLKWSEVFLEQ--GTLHFEDSKTGQK-SIPISAAVIGLLREAEQERCIDSPYVF----PS 274 Query: 278 KRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEM 337 +R DG A + R D +T + G E R HDLRH++AS + G L ++ + Sbjct: 275 ERGDGFYVGATKVWR-DLRTKF-------GDEKLRMHDLRHSFASLAVAGGASLPMIGAL 326 Query: 338 GGWESIEMVRRYAHLAPNHLTEHARKIDDIFG 369 G + +RYAHL+ + L R I D G Sbjct: 327 LGHKDTATTQRYAHLSADPL----RSISDQVG 354 >UniRef50_Q2JGT4 Phage integrase n=4 Tax=Frankia RepID=Q2JGT4_FRASC Length = 431 Score = 63.9 bits (154), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 72/294 (24%), Positives = 125/294 (42%), Gaps = 47/294 (15%) Query: 87 LEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTK 146 L G+ ++++ + + + +H + KQ+ A+ + P + + Sbjct: 138 LNKLNGVDVRNLLKRVRGTCLCCLHGTDRRRPVKQRRCCAVGR-----CCHQAPSARLVQ 192 Query: 147 AKHLAMIKAILRAAERD-WKWLEKAPVIKIPAVRNKRVRWLEKEEAKRLIDECP-EPLKS 204 H ++++ +L AA R+ A + K+ K R L ++A L+ + L + Sbjct: 193 QVH-SVLRNVLGAAVREELVGRNVAKLAKVSGPTYKVHRGLSADQASHLLKAAAHDRLYA 251 Query: 205 VVKFALATGLRKSNIINLEWQQIDMQ----------RRVAW----VNPEESKSNRAIGVA 250 + AL GLR+ I+ L W+ ID + +RV V P+ S R + Sbjct: 252 LYVLALYLGLRRGEILGLRWEDIDFEDETLAVRHSLQRVGGHLRVVAPKTRTSERTL--P 309 Query: 251 LNDTACKVLRDQIGKH-----------HKWVFVHTKAAKRADGTSTPAVRKMRIDS-KTS 298 L KVLR+ + + FV T A TP + D+ + S Sbjct: 310 LLPLIAKVLREHQARQDAERETADVNWRETGFVFTTA------IGTP----IEPDNLRRS 359 Query: 299 WLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRR-YAH 351 WL C G+E RFHD+RHT + L+ +GVP V++E+ G +I++ YAH Sbjct: 360 WLPLCGVLGLEGVRFHDIRHTCVTLLLNAGVPPHVVREIAGHSAIDVTMEIYAH 413 >UniRef50_C3RL48 Tyrosine recombinase xerC n=4 Tax=Bacteria RepID=C3RL48_9MOLU Length = 304 Score = 63.9 bits (154), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 64/267 (23%), Positives = 119/267 (44%), Gaps = 40/267 (14%) Query: 123 VQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPA--VRN 180 V A+ +G +YE K +S T L+ +++ ++ + + P + I + V Sbjct: 54 VSYAMLRGYLTKLYE-KNLSKTTINHKLSALRSFFNYLLKE-ELINDNPFLLIESQKVAK 111 Query: 181 KRVRWLEKEEAKRLID--ECPEPL----KSVVKFALATGLRKSNIINLEWQQIDMQRRVA 234 + +L EE L+D E + L K++++ A+GLR S ++NL+ ID + V Sbjct: 112 RNPDFLFPEEILGLLDSIETKDDLGIRNKAMMELMYASGLRCSEVVNLQLSNIDFNQMVL 171 Query: 235 WVNPEESKSNRAIGVALNDTACKVLRDQI----------GKHHKWVFVHTKAAKRAD-GT 283 +++ K N+ V +D A + L I + H +VFV+ + G Sbjct: 172 FIH---GKGNKDRYVPFHDYAGEWLIKYIQEARENLMIKNEGHNFVFVNKFGNPLTNRGV 228 Query: 284 STPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESI 343 R MR+ T + H +RH++A+ L+ +G + +QE+ G E++ Sbjct: 229 ENIVDRIMRLYDSTKKIHP-----------HTIRHSFATHLLNAGADIRTVQELLGHENL 277 Query: 344 EMVRRYAHLAPNHLTE-----HARKID 365 + Y H++ +HL E H R I+ Sbjct: 278 STTQIYTHISRDHLKEVYLKAHPRNIE 304 >UniRef50_C0EDT0 Putative uncharacterized protein n=2 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EDT0_9CLOT Length = 462 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 61/248 (24%), Positives = 112/248 (45%), Gaps = 40/248 (16%) Query: 134 PVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKIPAVRNKRVRWLEKEEA 191 PV + ++ +T H ++ ++L A + W+ + P +K P + K R+L++++ Sbjct: 198 PVDADRGLAAKTINSHHRLLSSMLNTAVQ-WQIIFSNPCDRVKPPKLERKEARYLDEKQT 256 Query: 192 KRLIDEC----PEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEE------- 240 +LI C PE +++V + TG+R+ + LEW DM+ ++ ++ E Sbjct: 257 AQLIT-CLQREPEQYQTMVLLLIYTGMRRGELCGLEWPDFDMEHKLLYIQRESLYLPDRG 315 Query: 241 --------SKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADG-------TST 285 S R I L+D A K+L HK+ + + AK D +T Sbjct: 316 IFEDTTKTYSSTRVI--KLSDEAVKLL-----IQHKFA-QNAERAKLGDAWVDTGKIFTT 367 Query: 286 PAVRKMRIDSKTSWLSA-CRRAGIEDFRFHDLRHTWASWLIQSGVPL-SVLQEMGGWESI 343 + + D+ T+W ++ + H LRHT A+ LI +GV L +V +G ++ Sbjct: 368 CTGKPIHPDTLTTWFHKFVQKNDLPPVSVHSLRHTNATLLIANGVNLTTVAGRLGHADTG 427 Query: 344 EMVRRYAH 351 + YAH Sbjct: 428 TTTKVYAH 435 >UniRef50_Q72B79 Site-specific recombinase, phage integrase family n=2 Tax=Desulfovibrio vulgaris RepID=Q72B79_DESVH Length = 373 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 89/357 (24%), Positives = 150/357 (42%), Gaps = 60/357 (16%) Query: 18 GGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLG------DLPDVTFEEACLRWLEEKA 71 GGK++ E++G K + + +AE + + G ++P F +A R+L A Sbjct: 37 GGKKVWETIGRKSEGVNAAYAARVRAERVKEVEAGRFIARDEMP--VFRDALERYLTVHA 94 Query: 72 DKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGK 131 KS +S + + EH D ++M K I + K A KG+ Sbjct: 95 KGKS---SESHMRGYFEHHIAPLFGD----------AKMDRIKPIHIEELKRSMA-EKGR 140 Query: 132 ELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKIPAVRNKRVRWLEKE 189 S QT +A+++ + R + +P +++P V R+R+L + Sbjct: 141 ----------SPQTIRHAIALVRQVYRKCVAWGIYTGTSPTDGVEMPKVDAARLRFLTEA 190 Query: 190 EAKRLIDECPEPLKS---VVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRA 246 EA L+ + + +L TG+R ++ L+ +++ V V ++ + A Sbjct: 191 EAASLLHALHRRSRQWHDIAYLSLYTGMRLGEVLGLQVGHVNVADGVIDVMDAKAGTRAA 250 Query: 247 I---GVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLS-A 302 GV A RD ++VFV +R G R I S S ++ Sbjct: 251 YMTAGVKEILAARCAGRDA----KEFVFV-----QRGGG------RVRYISSVFSRVADE 295 Query: 303 CRRAGIEDFR----FHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPN 355 G+ D R FH LRHT+ SWL Q GVPL + + G S+EM +RY+ L+P+ Sbjct: 296 LFNDGVTDARHKVVFHTLRHTFGSWLAQRGVPLYTIAVLMGHSSLEMTKRYSKLSPD 352 >UniRef50_Q1QMK4 Phage integrase n=2 Tax=Bradyrhizobiaceae RepID=Q1QMK4_NITHX Length = 267 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/174 (25%), Positives = 75/174 (43%), Gaps = 5/174 (2%) Query: 181 KRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEE 240 +RVR L+ EEA L D + F A+G+R + L W ++D R Sbjct: 70 ERVRELKIEEADALDDAMRVDYEPFFDFVRASGMRLKECVTLRWSEVDFGTRQI---VRT 126 Query: 241 SKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTK--AAKRADGTSTPAVRKMRIDSKTS 298 K R + + ++L G+H ++VF + KR +KT+ Sbjct: 127 GKGGRRVVFPITAAVREILFPLQGQHPEFVFTYVAVYGNKRLRRVRGQRYSLTYTGAKTA 186 Query: 299 WLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHL 352 W +G+ +FRFHD RH + + L++ L ++Q+ I+ RYAH+ Sbjct: 187 WQRLRASSGVANFRFHDFRHDFGTKLLRDSGNLKLVQKALNHRDIKSTLRYAHV 240 >UniRef50_P96629 ICEBs1 integrase n=1 Tax=Bacillus subtilis RepID=INT_BACSU Length = 368 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 57/228 (25%), Positives = 99/228 (43%), Gaps = 46/228 (20%) Query: 172 VIKIPAVRNKRVRWLEKEEAKRLIDECPEP---LKSVVKFALATGLRKSNIINLEWQ--- 225 V ++P R K++++ EE K+ I P+ K+ A TGLR ++ L+W+ Sbjct: 156 VKRLPLTR-KKMKFWRPEEFKKFISLIPQDQLLFKTFYTVAFLTGLRCGEMLALQWKDID 214 Query: 226 ----QIDMQRRVAWVN-------PEESKSNRAIGVALNDTACKVLR----------DQIG 264 +ID+ + W++ P+ S R V++N K+L +++G Sbjct: 215 KILLEIDVHKSCTWLDGQFVVTTPKTKNSIRR--VSINKKLLKLLERWKEAQEELFNELG 272 Query: 265 ---KHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWA 321 H ++F + R D S RK++ C+ + + R HD RH+ Sbjct: 273 IRHSHDTYIFQYKDTPSRKDIFS----RKIKY--------FCKDSDLTPIRLHDFRHSHV 320 Query: 322 SWLIQSGVPLSVLQEMGGWESIE-MVRRYAHLAPNHLTEHARKIDDIF 368 + LI G ++E G S++ + Y HL PN E A K+DD+ Sbjct: 321 ALLIHQGEDYITIKERLGHGSVKTTIDVYGHLYPNKQKEMADKLDDLL 368 >UniRef50_A3NDT2 Integrase n=5 Tax=pseudomallei group RepID=A3NDT2_BURP6 Length = 571 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 59/241 (24%), Positives = 106/241 (43%), Gaps = 37/241 (15%) Query: 146 KAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKRVRWLEKEEAKRLIDECPEPLKSV 205 +A+ +A+ +L A ER+ + ++ R R+ + EA+ + P L++ Sbjct: 268 RAQSIALRLELLMAPEREDANSATTVYRRKQVIKGARQRY--QAEAEETYEHIPL-LETF 324 Query: 206 VKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGK 265 + F L TG R+S + L W +D+ + A++ E+K+ R + L ++LR Q+ + Sbjct: 325 IHFQLMTGARRSETLTLTWSNVDLDGQAAFL--PETKNGRPRTLPLRSDLVELLR-QLPR 381 Query: 266 HHKWVFVHTKAAKRADGTSTPAVRKMRIDS-KTSWLSACRRAGI---EDFRFHDLRHTWA 321 + VF + +D + +W C AG+ + R HDLRH Sbjct: 382 TGELVF------------------PIGVDGLRKAWQRICMAAGLAGGAEVRIHDLRHEAI 423 Query: 322 SWLIQS------GVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIFGDNVPNM 375 S + ++ G L LQ G M+ RYAHL A+++D+ F N P+ Sbjct: 424 SRVAEAGSRTPGGFSLVDLQHFSGHRDTRMLLRYAHLCAGSF---AKRLDEAFRVNSPDS 480 Query: 376 S 376 + Sbjct: 481 T 481 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P24218 Prophage DLP12 integrase n=101 Tax=root RepID=IN... 518 e-145 UniRef50_Q93K89 Integrase of Shigella flexneri bacteriophage X n... 390 e-107 UniRef50_B7J7H0 Site-specific recombinase, phage integrase famil... 328 2e-88 UniRef50_C3X1W0 Phage integrase n=3 Tax=Betaproteobacteria RepID... 312 1e-83 UniRef50_C3X1P3 Phage integrase n=1 Tax=Oxalobacter formigenes H... 298 3e-79 UniRef50_C6M764 Xylulose-5-phosphate/fructose-6-phosphate phosph... 296 1e-78 UniRef50_C6HV65 Putative phage integrase n=1 Tax=Leptospirillum ... 290 6e-77 UniRef50_Q5ZTV4 Prophage dlp12 integrase n=2 Tax=Legionellales R... 290 8e-77 UniRef50_A1V8M7 Site-specific recombinase, phage integrase famil... 284 3e-75 UniRef50_D2TXV6 Phage integrase n=3 Tax=root RepID=D2TXV6_9ENTR 283 6e-75 UniRef50_Q31HE5 Tyrosine recombinase family protein n=1 Tax=Thio... 283 7e-75 UniRef50_Q47H88 Phage integrase n=1 Tax=Dechloromonas aromatica ... 283 9e-75 UniRef50_Q45YI6 Prophage integrase n=5 Tax=root RepID=Q45YI6_9CAUD 280 7e-74 UniRef50_A0YFT5 Phage integrase n=1 Tax=marine gamma proteobacte... 277 5e-73 UniRef50_B0USU3 Phage integrase family protein n=6 Tax=Pasteurel... 277 5e-73 UniRef50_UPI0001A444C2 Tyrosine recombinase xerD n=1 Tax=Pectoba... 274 3e-72 UniRef50_A1AN30 Phage integrase family protein n=1 Tax=Pelobacte... 268 3e-70 UniRef50_Q2LV83 Phage integrase family protein n=1 Tax=Syntrophu... 266 1e-69 UniRef50_C5AEN7 Prophage integrase n=19 Tax=Burkholderia RepID=C... 265 1e-69 UniRef50_UPI000196D4B7 site-specific recombinase, phage integras... 264 4e-69 UniRef50_C9MEM4 Prophage integrase n=1 Tax=Haemophilus influenza... 263 6e-69 UniRef50_Q1Q549 Similar to site-specific tyrosine recombinase n=... 249 9e-65 UniRef50_C6HUB8 Phage integrase family protein n=1 Tax=Leptospir... 248 3e-64 UniRef50_Q9T1P3 Integrase n=4 Tax=root RepID=Q9T1P3_BPD3 248 3e-64 UniRef50_B5YIK4 Site specific recombinase n=1 Tax=Thermodesulfov... 246 9e-64 UniRef50_C0DT82 Putative uncharacterized protein n=1 Tax=Eikenel... 244 3e-63 UniRef50_A8UUR8 Phage integrase family protein n=1 Tax=Hydrogeni... 241 3e-62 UniRef50_A6VKB4 Phage integrase family protein n=9 Tax=Pasteurel... 234 5e-60 UniRef50_B0U2H0 Phage integrase n=4 Tax=Xylella fastidiosa RepID... 233 8e-60 UniRef50_B6ALQ5 Integrase n=1 Tax=Leptospirillum sp. Group II '5... 233 1e-59 UniRef50_A8UVD2 Phage integrase family protein n=1 Tax=Hydrogeni... 232 2e-59 UniRef50_B7KWK2 Integrase family protein n=1 Tax=Methylobacteriu... 224 5e-57 UniRef50_B9JRM6 Integrase protein n=1 Tax=Agrobacterium vitis S4... 222 2e-56 UniRef50_B6ALG3 Integrase n=1 Tax=Leptospirillum sp. Group II '5... 221 3e-56 UniRef50_C8VWS4 Integrase family protein n=1 Tax=Desulfotomaculu... 221 5e-56 UniRef50_C6MS46 Integrase family protein n=1 Tax=Geobacter sp. M... 219 1e-55 UniRef50_A1K6M5 Site-specific recombinase, phage integrase famil... 219 2e-55 UniRef50_C6MZB6 Putative integrase n=1 Tax=Legionella drancourti... 216 9e-55 UniRef50_A4NZB4 Prophage integrase n=1 Tax=Haemophilus influenza... 215 2e-54 UniRef50_Q1IPY0 Phage integrase n=1 Tax=Candidatus Koribacter ve... 213 7e-54 UniRef50_A5EQT5 Putative prophage integrase n=1 Tax=Bradyrhizobi... 211 3e-53 UniRef50_Q5X3B3 Putative uncharacterized protein n=2 Tax=Gammapr... 211 5e-53 UniRef50_B2KEQ8 Integrase family protein n=1 Tax=Elusimicrobium ... 209 1e-52 UniRef50_C6NU13 Site-specific recombinase, phage integrase famil... 209 1e-52 UniRef50_A4A4J3 Integrase n=3 Tax=Gammaproteobacteria RepID=A4A4... 206 1e-51 UniRef50_C6HW36 Putative phage integrase n=1 Tax=Leptospirillum ... 205 2e-51 UniRef50_A8ZUN3 Integrase family protein n=2 Tax=Desulfobacterac... 200 8e-50 UniRef50_C0GWH6 Integrase family protein n=3 Tax=Desulfonatronos... 200 9e-50 UniRef50_A3T0W5 Site-specific integrase/recombinase-like n=3 Tax... 200 1e-49 UniRef50_D1RC05 Putative uncharacterized protein n=1 Tax=Parachl... 199 1e-49 UniRef50_Q1NPW4 Phage integrase n=5 Tax=Deltaproteobacteria RepI... 198 3e-49 UniRef50_A6G3J3 Site-specific recombinase, phage integrase famil... 197 6e-49 UniRef50_C8VWK7 Integrase family protein n=1 Tax=Desulfotomaculu... 197 6e-49 UniRef50_B8J3W5 Putative uncharacterized protein n=1 Tax=Desulfo... 197 6e-49 UniRef50_Q0VMT6 Rci protein n=22 Tax=Proteobacteria RepID=Q0VMT6... 197 6e-49 UniRef50_C5SDU6 Integrase family protein n=1 Tax=Allochromatium ... 196 1e-48 UniRef50_A8V435 Phage integrase family protein n=2 Tax=Hydrogeni... 195 2e-48 UniRef50_C0N6F6 Site-specific recombinase, phage integrase famil... 195 2e-48 UniRef50_A2SD71 Putative uncharacterized protein n=1 Tax=Methyli... 194 4e-48 UniRef50_B7DTQ3 Integrase family protein n=2 Tax=Bacillales RepI... 194 4e-48 UniRef50_A1SRZ5 Phage integrase family protein n=1 Tax=Psychromo... 193 7e-48 UniRef50_A1AUY6 Phage integrase family protein n=2 Tax=Desulfuro... 193 8e-48 UniRef50_B7RVJ7 Site-specific recombinase, phage integrase famil... 193 8e-48 UniRef50_Q7MKK6 Integrase n=6 Tax=Proteobacteria RepID=Q7MKK6_VIBVY 192 2e-47 UniRef50_A3V904 Phage integrase n=5 Tax=Rhodobacteraceae RepID=A... 191 5e-47 UniRef50_C4KVM9 Site-specific recombinase, phage integrase famil... 190 7e-47 UniRef50_A0LKH4 Phage integrase family protein n=1 Tax=Syntropho... 190 8e-47 UniRef50_C6MQB4 Integrase family protein n=1 Tax=Geobacter sp. M... 190 9e-47 UniRef50_Q6AMU1 Related to integrase/recombinase n=1 Tax=Desulfo... 189 1e-46 UniRef50_C1XYN2 Site-specific recombinase XerD n=1 Tax=Meiotherm... 189 1e-46 UniRef50_C0QB98 Putative uncharacterized protein n=1 Tax=Desulfo... 189 2e-46 UniRef50_B8FGB9 Integrase family protein n=2 Tax=Desulfobacterac... 189 2e-46 UniRef50_C4KAG8 Integrase family protein n=1 Tax=Thauera sp. MZ1... 188 2e-46 UniRef50_C1SNQ2 Site-specific recombinase XerD n=1 Tax=Denitrovi... 188 3e-46 UniRef50_Q1D2W1 Site-specific recombinase, phage integrase famil... 187 5e-46 UniRef50_B3E8B2 Integrase family protein n=1 Tax=Geobacter lovle... 187 5e-46 UniRef50_C6E4Z2 Integrase family protein n=2 Tax=Geobacter RepID... 187 6e-46 UniRef50_A6VBP4 Site-specific recombinase, phage integrase famil... 187 6e-46 UniRef50_B7DTD1 Integrase family protein n=2 Tax=Alicyclobacillu... 187 6e-46 UniRef50_B1JZG3 Integrase family protein n=1 Tax=Burkholderia ce... 186 9e-46 UniRef50_A1AYV5 Phage integrase family protein n=2 Tax=Rhodobact... 186 1e-45 UniRef50_Q3JF08 Phage integrase n=2 Tax=Nitrosococcus oceani Rep... 186 1e-45 UniRef50_D2L4J5 Integrase family protein n=1 Tax=Desulfovibrio s... 186 2e-45 UniRef50_B1M1F6 Integrase family protein n=2 Tax=Methylobacteriu... 184 4e-45 UniRef50_C0GUW3 Integrase family protein n=1 Tax=Desulfonatronos... 184 6e-45 UniRef50_D1C8V1 Integrase family protein n=1 Tax=Sphaerobacter t... 183 8e-45 UniRef50_A8GE25 Integrase family protein n=18 Tax=Enterobacteria... 182 2e-44 UniRef50_B8FKX9 Integrase family protein n=2 Tax=Desulfatibacill... 182 2e-44 UniRef50_C6NUL0 Integrase n=1 Tax=Acidithiobacillus caldus ATCC ... 182 2e-44 UniRef50_B2TH09 Integrase family protein n=4 Tax=Proteobacteria ... 182 2e-44 UniRef50_C1DF50 Phage integrase n=4 Tax=Pseudomonadaceae RepID=C... 181 3e-44 UniRef50_A7FCB1 Shufflon-specific DNA recombinase n=2 Tax=Entero... 181 3e-44 UniRef50_A9D4N1 Putative uncharacterized protein n=1 Tax=Hoeflea... 181 5e-44 UniRef50_Q0FPA2 Probable site-specific integrase/recombinase n=2... 181 6e-44 UniRef50_B7GVF6 Tyrosine recombinase xerC n=1 Tax=Acinetobacter ... 180 7e-44 UniRef50_B0UQB2 Integrase family protein n=5 Tax=Rhizobiales Rep... 180 7e-44 UniRef50_B1JDB3 Integrase family protein n=3 Tax=root RepID=B1JD... 180 8e-44 UniRef50_B7I3I8 Integrase n=4 Tax=Acinetobacter baumannii RepID=... 180 1e-43 UniRef50_Q1MRZ7 Prophage DLP12 integrase (Fragment) n=1 Tax=Laws... 179 1e-43 UniRef50_C4XTG1 Site-specific recombinase n=1 Tax=Desulfovibrio ... 179 2e-43 UniRef50_Q0K8W4 Phage integrase family protein n=1 Tax=Ralstonia... 179 2e-43 UniRef50_A6FXR9 Phage integrase n=1 Tax=Plesiocystis pacifica SI... 178 3e-43 UniRef50_A9AEX0 Tyrosine recombinase n=1 Tax=Burkholderia multiv... 178 3e-43 UniRef50_A5IH69 Site specific recombinase n=2 Tax=Legionella pne... 177 4e-43 UniRef50_Q2RHJ2 Phage integrase n=3 Tax=Firmicutes RepID=Q2RHJ2_... 177 5e-43 UniRef50_C3L682 Prophage LambdaBa04, site-specific recombinase, ... 177 5e-43 UniRef50_Q72B79 Site-specific recombinase, phage integrase famil... 177 8e-43 UniRef50_B3CTI8 Putative integrase n=7 Tax=Orientia tsutsugamush... 177 9e-43 UniRef50_A3NCI9 Phage integrase n=6 Tax=Burkholderia RepID=A3NCI... 177 9e-43 UniRef50_A0LQG0 Phage integrase family protein n=2 Tax=Deltaprot... 176 1e-42 UniRef50_A5CCP8 Phage-related integrase n=25 Tax=Orientia tsutsu... 176 1e-42 UniRef50_Q2IFG9 Phage integrase n=2 Tax=Cystobacterineae RepID=Q... 176 1e-42 UniRef50_B6ASA1 Recombinase n=12 Tax=Bacteria RepID=B6ASA1_9BACT 176 1e-42 UniRef50_A1VU89 Phage integrase family protein n=2 Tax=Burkholde... 176 2e-42 UniRef50_B3T0I4 Putative Phage integrase family protein n=2 Tax=... 176 2e-42 UniRef50_Q1QLE5 Phage integrase n=2 Tax=Nitrobacter RepID=Q1QLE5... 175 2e-42 UniRef50_Q1MA85 Putative shufflon-specific DNA recombinase n=3 T... 175 3e-42 UniRef50_C0EDT0 Putative uncharacterized protein n=2 Tax=Clostri... 175 3e-42 UniRef50_C5V1I5 Integrase family protein n=1 Tax=Gallionella fer... 174 4e-42 UniRef50_UPI00016AD797 phage integrase family protein n=1 Tax=Bu... 174 4e-42 UniRef50_A1VC91 Phage integrase family protein n=1 Tax=Desulfovi... 174 4e-42 UniRef50_Q1RJE3 Integrase n=9 Tax=Rickettsia RepID=Q1RJE3_RICBR 174 5e-42 UniRef50_B9KV34 Phage integrase n=4 Tax=Rhodobacter RepID=B9KV34... 174 7e-42 UniRef50_B8IQS5 Integrase family protein n=1 Tax=Methylobacteriu... 174 7e-42 UniRef50_D0KZD4 Integrase family protein n=1 Tax=Halothiobacillu... 174 7e-42 UniRef50_Q3SHX2 Site-specific recombinase, phage integrase famil... 174 7e-42 UniRef50_Q30Q21 Phage integrase n=1 Tax=Sulfurimonas denitrifica... 173 8e-42 UniRef50_A7HHG2 Phage integrase family protein n=1 Tax=Anaeromyx... 173 9e-42 UniRef50_C2RY84 Prophage LambdaBa04, site-specific recombinase, ... 173 1e-41 UniRef50_UPI0001826473 putative integrase n=1 Tax=Enterobacter c... 173 1e-41 UniRef50_C6HVL4 Phage integrase family protein n=1 Tax=Leptospir... 172 1e-41 UniRef50_C2YK72 Phage integrase n=3 Tax=Bacillus cereus group Re... 172 2e-41 UniRef50_B8J4X3 Integrase family protein n=1 Tax=Desulfovibrio d... 172 2e-41 UniRef50_UPI00003841F3 COG0582: Integrase n=1 Tax=Magnetospirill... 172 2e-41 UniRef50_C7LSP4 Integrase family protein n=1 Tax=Desulfomicrobiu... 172 2e-41 UniRef50_A6FVR7 Phage integrase n=3 Tax=Roseobacter sp. AzwK-3b ... 172 2e-41 UniRef50_UPI0000E0E5BD Tyrosine recombinase xerC n=2 Tax=Proteob... 172 2e-41 UniRef50_C6XR20 Integrase family protein n=1 Tax=Hirschia baltic... 172 3e-41 UniRef50_C9AMW3 Phage integrase n=8 Tax=Enterococcus faecium Rep... 172 3e-41 UniRef50_Q04676 Rci protein n=10 Tax=Enterobacteriaceae RepID=Q0... 172 3e-41 UniRef50_Q1K3L0 Phage integrase n=1 Tax=Desulfuromonas acetoxida... 171 3e-41 UniRef50_B0PGN2 Putative uncharacterized protein n=2 Tax=Clostri... 171 3e-41 UniRef50_B6R5P1 Phage integrase n=1 Tax=Pseudovibrio sp. JE062 R... 171 6e-41 UniRef50_P76168 Putative lambdoid prophage Qin defective integra... 171 6e-41 UniRef50_Q1GIK7 Phage integrase n=5 Tax=Rhodobacteraceae RepID=Q... 170 6e-41 UniRef50_Q2W123 Integrase n=1 Tax=Magnetospirillum magneticum AM... 170 7e-41 UniRef50_Q1MNY2 Integrase n=1 Tax=Lawsonia intracellularis PHE/M... 170 8e-41 UniRef50_B0UKQ5 Integrase family protein n=2 Tax=Rhizobiales Rep... 169 1e-40 UniRef50_P10487 Shufflon-specific DNA recombinase n=21 Tax=root ... 169 1e-40 UniRef50_Q1K3L6 Phage integrase n=1 Tax=Desulfuromonas acetoxida... 169 1e-40 UniRef50_A6FWH8 Site-specific recombinase XerD-like protein n=1 ... 169 2e-40 UniRef50_B1FJ84 Integrase family protein n=1 Tax=Burkholderia am... 169 2e-40 UniRef50_A1WTV4 Phage integrase family protein n=1 Tax=Halorhodo... 169 2e-40 UniRef50_A4J1T6 Phage integrase family protein n=1 Tax=Desulfoto... 169 2e-40 UniRef50_A8LM37 Integrase family protein n=3 Tax=Rhodobacterales... 169 2e-40 UniRef50_B1VP49 Putative phage integrase n=1 Tax=Streptomyces gr... 169 2e-40 UniRef50_A6SV87 Site-specific recombinase, phage integrase famil... 168 3e-40 UniRef50_Q11LX6 Phage integrase n=1 Tax=Chelativorans sp. BNC1 R... 168 4e-40 UniRef50_Q1GLB2 Phage integrase n=12 Tax=Rhodobacterales RepID=Q... 167 6e-40 UniRef50_B5K270 Integrase n=1 Tax=Octadecabacter antarcticus 238... 167 6e-40 UniRef50_A6Q245 Site-specific recombinase, phage integrase famil... 167 7e-40 UniRef50_C7I1A8 Integrase family protein n=1 Tax=Thiomonas inter... 167 7e-40 UniRef50_B5ZXT1 Integrase family protein n=1 Tax=Rhizobium legum... 167 7e-40 UniRef50_A0LHA2 Phage integrase family protein n=1 Tax=Syntropho... 167 8e-40 UniRef50_B8KTC0 Site-specific recombinase, phage integrase famil... 167 9e-40 UniRef50_B8EKX9 Integrase family protein n=1 Tax=Methylocella si... 167 9e-40 UniRef50_D2L4K8 Integrase family protein n=1 Tax=Desulfovibrio s... 167 9e-40 UniRef50_A1V9J7 Phage integrase family protein n=1 Tax=Desulfovi... 166 9e-40 UniRef50_A6TLJ2 Phage integrase family protein n=1 Tax=Alkaliphi... 166 1e-39 UniRef50_Q2W8W7 Integrase n=2 Tax=Magnetospirillum RepID=Q2W8W7_... 166 1e-39 UniRef50_Q73NH9 Site-specific recombinase, phage integrase famil... 166 1e-39 UniRef50_B6IMM4 Phage integrase n=1 Tax=Rhodospirillum centenum ... 166 1e-39 UniRef50_Q2W780 Integrase n=1 Tax=Magnetospirillum magneticum AM... 166 1e-39 UniRef50_C2NSI2 DNA integration/recombination/invertion protein ... 165 2e-39 UniRef50_D2BJR0 Site-specific recombinase, phage integrase famil... 165 2e-39 UniRef50_Q479U8 Phage integrase n=1 Tax=Dechloromonas aromatica ... 165 2e-39 UniRef50_A6QCM5 Site-specific recombinase, phage integrase famil... 165 2e-39 UniRef50_C5TV13 Integrase family protein n=1 Tax=Desulfovibrio v... 165 2e-39 UniRef50_A5CFJ0 Phage-related integrase n=19 Tax=Orientia tsutsu... 165 2e-39 UniRef50_Q72A00 Site-specific recombinase, phage integrase famil... 165 2e-39 UniRef50_C9M987 Xylulose-5-phosphate/fructose-6-phosphate phosph... 165 2e-39 UniRef50_C3IU95 DNA integration/recombination/inversion protein ... 165 3e-39 UniRef50_A8L4Q7 Integrase family protein n=9 Tax=Actinomycetales... 165 3e-39 UniRef50_A4J0G7 Phage integrase family protein n=1 Tax=Desulfoto... 165 3e-39 UniRef50_B2K361 Integrase family protein n=16 Tax=Gammaproteobac... 164 4e-39 UniRef50_B8D1P6 Phage integrase family protein n=1 Tax=Halotherm... 164 5e-39 UniRef50_Q2STX2 Site-specific recombinase, phage integrase famil... 164 5e-39 UniRef50_Q2LQY7 Integrase family protein n=1 Tax=Syntrophus acid... 164 5e-39 UniRef50_Q3SUE5 Phage integrase n=6 Tax=Alphaproteobacteria RepI... 164 5e-39 UniRef50_C8R239 Integrase family protein n=1 Tax=Desulfurivibrio... 164 6e-39 UniRef50_A9VYK3 Integrase family protein n=2 Tax=Methylobacteriu... 164 6e-39 UniRef50_A8IF33 Putative phage HP1 integrase n=1 Tax=Azorhizobiu... 164 7e-39 UniRef50_D1CFY4 Integrase family protein n=1 Tax=Thermobaculum t... 163 9e-39 UniRef50_A4XMV7 Phage integrase family protein n=2 Tax=Caldicell... 163 1e-38 UniRef50_Q1LJF6 Phage integrase n=2 Tax=Betaproteobacteria RepID... 163 1e-38 UniRef50_Q8XZ52 Putative integrase/recombinase protein n=1 Tax=R... 163 1e-38 UniRef50_A9VJZ8 Integrase family protein n=15 Tax=Bacillus cereu... 163 1e-38 UniRef50_C5RZC7 Phage integrase family protein n=1 Tax=Actinobac... 163 1e-38 UniRef50_A6GBT9 Phage integrase n=2 Tax=Plesiocystis pacifica SI... 162 1e-38 UniRef50_C3RL48 Tyrosine recombinase xerC n=4 Tax=Bacteria RepID... 162 2e-38 UniRef50_Q3A6E0 Site-specific recombinase/integrase n=3 Tax=Pelo... 162 2e-38 UniRef50_B5K290 Phage integrase n=2 Tax=Octadecabacter antarctic... 162 2e-38 UniRef50_A3P0T5 Site-specific recombinase, phage integrase famil... 162 2e-38 UniRef50_Q129B4 Phage integrase n=1 Tax=Polaromonas sp. JS666 Re... 162 2e-38 UniRef50_A3K1Y3 Putative uncharacterized protein n=1 Tax=Sagittu... 161 3e-38 UniRef50_A6Q5N8 Site-specific recombinase, phage integrase famil... 161 3e-38 UniRef50_C1CZ59 Putative Tyrosine recombinase xerC-like protein ... 161 4e-38 UniRef50_C9RA80 Integrase family protein n=1 Tax=Ammonifex degen... 161 4e-38 UniRef50_A6G3E1 Phage integrase n=2 Tax=Plesiocystis pacifica SI... 161 4e-38 UniRef50_A0LL76 Phage integrase family protein n=1 Tax=Syntropho... 161 4e-38 UniRef50_D1YMA1 Site-specific recombinase, phage integrase famil... 161 4e-38 UniRef50_A1VGL4 Phage integrase family protein n=1 Tax=Desulfovi... 161 4e-38 UniRef50_P06723 Integrase n=52 Tax=root RepID=VINT_BP186 161 5e-38 UniRef50_B1KTY6 Site-specific recombinase, phage integrase famil... 161 5e-38 UniRef50_C9CXZ5 Phage integrase n=1 Tax=Silicibacter sp. TrichCH... 160 6e-38 UniRef50_A0AGT2 Complete genome n=7 Tax=Bacilli RepID=A0AGT2_LISW6 160 7e-38 UniRef50_B0TI08 Phage integrase family protein n=14 Tax=root Rep... 160 8e-38 UniRef50_A5EBE3 Putative phage related integrase n=1 Tax=Bradyrh... 160 9e-38 UniRef50_C6BFQ2 Integrase family protein n=4 Tax=Betaproteobacte... 160 1e-37 UniRef50_C5V2X2 Integrase family protein n=1 Tax=Gallionella fer... 160 1e-37 Sequences not found previously or not previously below threshold: UniRef50_A8MGP9 Integrase family protein n=1 Tax=Alkaliphilus or... 193 8e-48 UniRef50_D2LSV7 Integrase family protein n=1 Tax=Bacillus cellul... 189 2e-46 UniRef50_B7IY65 DNA integration/recombination/invertion protein ... 185 3e-45 UniRef50_A8UWI5 Phage integrase n=1 Tax=Hydrogenivirga sp. 128-5... 184 4e-45 UniRef50_A4TWM2 Phage integrase n=1 Tax=Magnetospirillum gryphis... 182 2e-44 UniRef50_Q1AUQ4 Phage integrase n=3 Tax=Rubrobacter xylanophilus... 177 5e-43 UniRef50_A4ILC8 DNA integration/recombination/invertion protein ... 177 5e-43 UniRef50_Q0AUP6 Phage integrase n=1 Tax=Syntrophomonas wolfei su... 176 1e-42 UniRef50_C6XDT3 Integrase family protein n=1 Tax=Methylovorus sp... 171 5e-41 UniRef50_B0KAT2 Phage integrase family protein n=7 Tax=Clostridi... 171 5e-41 UniRef50_C2Z776 Prophage LambdaBa04, site-specific recombinase, ... 171 6e-41 UniRef50_B9MQ70 Integrase family protein n=1 Tax=Anaerocellum th... 169 1e-40 UniRef50_D1A578 Integrase family protein n=1 Tax=Thermomonospora... 167 5e-40 UniRef50_Q831G3 Site-specific recombinase, phage integrase famil... 167 5e-40 UniRef50_C9RBE5 Integrase family protein n=1 Tax=Ammonifex degen... 167 6e-40 UniRef50_C4FP65 Putative uncharacterized protein n=1 Tax=Veillon... 167 8e-40 UniRef50_UPI000169495E prophage LambdaBa04, site-specific recomb... 166 1e-39 UniRef50_B9MP49 Integrase family protein n=1 Tax=Anaerocellum th... 166 1e-39 UniRef50_A4XLL4 Phage integrase family protein n=1 Tax=Caldicell... 165 2e-39 UniRef50_B1B8Q2 Phage integrase n=1 Tax=Clostridium botulinum C ... 165 3e-39 UniRef50_A5N1F6 Integrase-related protein n=3 Tax=Clostridia Rep... 165 3e-39 UniRef50_B6G0S2 Putative uncharacterized protein n=1 Tax=Clostri... 164 6e-39 UniRef50_B4BIA4 Integrase family protein n=2 Tax=Geobacillus Rep... 163 8e-39 UniRef50_C9XJT1 Integrase n=6 Tax=Clostridium difficile RepID=C9... 163 1e-38 UniRef50_Q3Z840 Site-specific recombinase, phage integrase famil... 162 2e-38 UniRef50_B9MR26 Integrase family protein n=2 Tax=Anaerocellum th... 161 3e-38 UniRef50_Q3ABG2 Prophage LambdaCh01, site-specific recombinase, ... 161 3e-38 UniRef50_C4XKJ5 Site-specific recombinase n=1 Tax=Desulfovibrio ... 161 4e-38 UniRef50_B1RM53 Phage integrase n=4 Tax=Clostridium RepID=B1RM53... 161 4e-38 UniRef50_B2V4P6 Phage integrase family protein n=9 Tax=root RepI... 160 8e-38 >UniRef50_P24218 Prophage DLP12 integrase n=101 Tax=root RepID=INTD_ECOLI Length = 387 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 387/387 (100%), Positives = 387/387 (100%) Query: 1 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFE 60 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFE Sbjct: 1 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFE 60 Query: 61 EACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 EACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK Sbjct: 61 EACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 Query: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRN 180 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRN Sbjct: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRN 180 Query: 181 KRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEE 240 KRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEE Sbjct: 181 KRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEE 240 Query: 241 SKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWL 300 SKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWL Sbjct: 241 SKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWL 300 Query: 301 SACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEH 360 SACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEH Sbjct: 301 SACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEH 360 Query: 361 ARKIDDIFGDNVPNMSHSEIMEDIKKA 387 ARKIDDIFGDNVPNMSHSEIMEDIKKA Sbjct: 361 ARKIDDIFGDNVPNMSHSEIMEDIKKA 387 >UniRef50_Q93K89 Integrase of Shigella flexneri bacteriophage X n=8 Tax=root RepID=Q93K89_ECOLX Length = 386 Score = 390 bits (1001), Expect = e-107, Method: Composition-based stats. Identities = 205/381 (53%), Positives = 266/381 (69%), Gaps = 1/381 (0%) Query: 1 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFE 60 MS+ R W+ + P G R++ SL T DKRQAQELHD+ KAE WRV+ LG+ P F+ Sbjct: 1 MSIKLRGGTWHCDFVAPDGSRVRRSLETSDKRQAQELHDRLKAEAWRVKNLGESPKKLFK 60 Query: 61 EACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 EAC+RWL EK+DKKS+D DKS I FW+ HF L DI+ KI AV M NR+ + W+ Sbjct: 61 EACIRWLREKSDKKSIDDDKSIISFWMLHFRETILSDITTEKIMEAVDGMENRRHRLNWE 120 Query: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRN 180 +R GK +P Y+PK S TK +HLA+++AIL A +W WL++ P I P V+N Sbjct: 121 MSRDRCLRLGKPVPEYKPKLASKGTKTRHLAILRAILNMAV-EWGWLDRTPKISTPRVKN 179 Query: 181 KRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEE 240 R+RWL +EE+KRL E VV FA+ TGLR+SN+ +LEW Q+D+ +++AW++P+E Sbjct: 180 GRIRWLTEEESKRLFAEIAPHFFPVVMFAITTGLRRSNVTDLEWSQVDLDKKMAWMHPDE 239 Query: 241 SKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWL 300 +K+ AIGV LN+TAC++LR Q G H +WVFVHTK A R+DGT T AVRKMR DS +W Sbjct: 240 TKAGNAIGVPLNETACQILRKQQGLHKRWVFVHTKPAYRSDGTKTAAVRKMRTDSNKAWK 299 Query: 301 SACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEH 360 A +RAGI +FRFHDLRHTWASWL+QSGV L L+EMGGWE++EMV+RYAHL+ HLTEH Sbjct: 300 GALKRAGISNFRFHDLRHTWASWLVQSGVSLLALKEMGGWETLEMVQRYAHLSAGHLTEH 359 Query: 361 ARKIDDIFGDNVPNMSHSEIM 381 A KID I N N + E + Sbjct: 360 ASKIDAIISRNGTNTAQEENV 380 >UniRef50_B7J7H0 Site-specific recombinase, phage integrase family n=5 Tax=Bacteria RepID=B7J7H0_ACIF2 Length = 349 Score = 328 bits (841), Expect = 2e-88, Method: Composition-based stats. Identities = 143/385 (37%), Positives = 229/385 (59%), Gaps = 42/385 (10%) Query: 3 LFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEA 62 L++R + W+ S++ P G+RI+ S GT +K QA+ELHD KA+ WR +LGD P T+++A Sbjct: 2 LYKRGKTWWISFTTPNGQRIRRSAGTTEKAQAEELHDSLKAQAWRQVQLGDRPAYTWDDA 61 Query: 63 CLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQK 122 +RWL+EKA K SL +D+ + + +HF G+ L+D++ +I + + Sbjct: 62 GVRWLDEKAHKASLVTDEIFLAWLQDHFRGVPLRDLNRDRIMTVLQ-------------- 107 Query: 123 VQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKR 182 + S T ++A+I+++LRAA +W WL+ P+++ +R Sbjct: 108 -------------IKKTQTSASTANHYMALIRSMLRAAV-EWGWLDYPPLLRPYPTPTQR 153 Query: 183 VRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESK 242 VRWL E+A L++E P L+ + F+LATGLR+SN+ LEW Q+D+ R++AW++ +++K Sbjct: 154 VRWLTPEQAVLLLNELPPHLRDMAAFSLATGLRRSNVTGLEWSQLDLGRKIAWIHADQAK 213 Query: 243 SNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSA 302 + + I V L+D A +LR QIG H +VF + +++ + +W A Sbjct: 214 ARKPITVPLDDVAISILRAQIGNHPIYVFTYCG-------------KRVTQVNTKAWKKA 260 Query: 303 CRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHAR 362 RAGIE+FR+HDLRHTWASW IQ+G PL+ LQ++GGW S EMVR+YAHL+P HL ++A+ Sbjct: 261 LERAGIENFRWHDLRHTWASWHIQAGTPLNTLQDLGGWHSSEMVRKYAHLSPEHLAQYAQ 320 Query: 363 KIDDIFGDN-VPNMSHSEIMEDIKK 386 +S ++E+ K+ Sbjct: 321 NAGQNLQPAYGTKLSQPHLVEEAKR 345 >UniRef50_C3X1W0 Phage integrase n=3 Tax=Betaproteobacteria RepID=C3X1W0_OXAFO Length = 354 Score = 312 bits (800), Expect = 1e-83, Method: Composition-based stats. Identities = 132/378 (34%), Positives = 205/378 (54%), Gaps = 41/378 (10%) Query: 1 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFE 60 M+L++R + ++ S++ P GKRI+ S GT ++++AQ+L DK K E W + LG T++ Sbjct: 1 MALYKRGKTYWISFTAPDGKRIRCSAGTSNRQKAQQLFDKLKHEAWNRKYLGIPERHTWD 60 Query: 61 EACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 EA L W+ EK DKKSL D S + + L +I+ I Sbjct: 61 EAALLWIREKTDKKSLKDDVSMLRWLTPFLRSRYLDEITRPMIAR--------------- 105 Query: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRN 180 + + + ++L++++AI A + W+WL KAP I + Sbjct: 106 ------------IGEIKKAESTPARANRYLSLLRAIFNRAVKIWEWLPKAPTITLYREPK 153 Query: 181 KRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEE 240 RVR+L EE +R+ DE P+ K + F++ TGLR+SN++NL W Q+D + ++ E Sbjct: 154 LRVRYLTPEEIRRVFDELPDHQKPIFTFSIMTGLRRSNVLNLRWDQVDFMQDAIIISGNE 213 Query: 241 SKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWL 300 K+ + V ++ T ++L DQ+GKH ++VF + + D KT++ Sbjct: 214 MKAGKTHVVPMSATVKQILMDQVGKHPQYVFTYRG--------------RRIGDIKTAFR 259 Query: 301 SACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEH 360 A +R GI D+R+HD RHTWAS LIQ+GVPL+ LQEMG W S EMV+RYAHL+P L E+ Sbjct: 260 KALKRTGITDYRWHDNRHTWASILIQNGVPLNELQEMGAWNSAEMVKRYAHLSPQKLKEN 319 Query: 361 ARKIDDIFGDNVPNMSHS 378 A+ +D+I V +S Sbjct: 320 AQVVDNILASAVTTLSQP 337 >UniRef50_C3X1P3 Phage integrase n=1 Tax=Oxalobacter formigenes HOxBLS RepID=C3X1P3_OXAFO Length = 348 Score = 298 bits (763), Expect = 3e-79, Method: Composition-based stats. Identities = 135/386 (34%), Positives = 213/386 (55%), Gaps = 45/386 (11%) Query: 1 MSLFRRNEI--WYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 MSL++R + W+ + PGGKRI++S GT+DK +AQE HDK KA LW EKL P T Sbjct: 1 MSLYKRKDSSYWWIKITSPGGKRIQQSTGTEDKMKAQEYHDKIKAALWDEEKLNKKPQRT 60 Query: 59 FEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEI 118 ++EA +RWL E +DK++ D +++ + + L IS I R Sbjct: 61 WQEATVRWLNETSDKRTTREDITKLRWLHPILGNLTLDQISLPVIDMIRER--------- 111 Query: 119 WKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAV 178 + K S T ++L +++AIL A+ +W+W++ P IK+ Sbjct: 112 ------------------KLKEASKATVNRYLNLVRAILNRAKNEWEWIDGFPKIKMYKE 153 Query: 179 RNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNP 238 N R R L E+A +L+ E PE + +V FAL TGLR+ N++++EW+ +D++ R A+V Sbjct: 154 SNNRNRSLTPEQADKLLAELPEHQRDIVLFALYTGLRQRNVLDMEWEHVDLELRHAYV-- 211 Query: 239 EESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTS 298 +K+ A+ V LND A ++ QIGKH ++VF + + +R + + Sbjct: 212 PRTKNGEALAVPLNDVAMSIITKQIGKHPQFVFSYRG-------------KHIRYANTLA 258 Query: 299 WLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLT 358 W A RAGI DFR+HDLRHTWA+W ++G P LQ +GGW++ MV RYAH+AP L+ Sbjct: 259 WRKALVRAGITDFRWHDLRHTWATWQRKAGTPTHELQHLGGWKTRAMVERYAHIAPEALS 318 Query: 359 EHARKIDDI-FGDNVPNMSHSEIMED 383 A +++ I G + + +++ ++ Sbjct: 319 NAASRLNKIKLGYVLATLGENDVCKN 344 >UniRef50_C6M764 Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase n=3 Tax=Neisseriaceae RepID=C6M764_NEISI Length = 352 Score = 296 bits (757), Expect = 1e-78, Method: Composition-based stats. Identities = 143/368 (38%), Positives = 218/368 (59%), Gaps = 43/368 (11%) Query: 1 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFE 60 M ++ RN ++Y G+RI++S+GTK+K++AQ+LHDK ELW+ E + P +E Sbjct: 1 MPIYLRNGVYYVDIRTESGRRIRQSVGTKNKKEAQKLHDKLTYELWQHEHFDEKPKRLWE 60 Query: 61 EACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 EA +RW++EK+DKKS+ D R+ L G+ L +S I V R+ Sbjct: 61 EAAVRWIKEKSDKKSIKDDICRLRM-LPKLRGVYLHHLSRDFIMDVVDRL---------- 109 Query: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRN 180 P S TK +++A+I++IL A+ +W W++K P +K+ Sbjct: 110 -------------------PCSNSTKNRYIALIRSILYKAQNEWGWIDKVPKLKLKKEAE 150 Query: 181 KRVRWLEKEEAKRLIDECP-EPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPE 239 KR+RWL+ EEA++LI+ P + +++ KF+ TGLR+ N+ L W+Q+D+ R+ AW+ P+ Sbjct: 151 KRIRWLKPEEAEQLINALPDDHWRAIAKFSFCTGLRQRNVFGLRWEQVDLNRKTAWIYPD 210 Query: 240 ESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSW 299 E+K+ R IGV LND A +VL +++G H +VF + + + + S W Sbjct: 211 EAKAGRPIGVPLNDVAIRVLSERMGIHKTYVFTNRE------------NKPITALSSRMW 258 Query: 300 LSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTE 359 RAGI +FR+HD+RHTWASWL+Q GVPL L+EMGGWE ++MV RYAHLA +HL Sbjct: 259 KRTLERAGISNFRWHDIRHTWASWLVQRGVPLVALKEMGGWERLDMVMRYAHLATDHLIA 318 Query: 360 HARKIDDI 367 HA +DD+ Sbjct: 319 HAEVLDDL 326 >UniRef50_C6HV65 Putative phage integrase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HV65_9BACT Length = 337 Score = 290 bits (742), Expect = 6e-77, Method: Composition-based stats. Identities = 134/365 (36%), Positives = 212/365 (58%), Gaps = 43/365 (11%) Query: 3 LFRRNE--IWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFE 60 LF+R + IW+ S+++ G+R + S GT DK QA ELHD+ K+E WR L + P + ++ Sbjct: 2 LFKRKDSPIWWVSFTVR-GRRTRCSAGTTDKAQALELHDRWKSEAWREISLKEKPKLGWK 60 Query: 61 EACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 EA L+WLE K+ K ++ D++ + F ++G +L +I + +I S Sbjct: 61 EAALKWLEVKSAKATIHDDEAHLLFIQNFWKGKKLSEIGKEEIDSL-------------- 106 Query: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRN 180 + VS T + L++++AILR + + W+E P +++ Sbjct: 107 ------------KVKKKATGVSNATVNRMLSLVRAILRMSFK-LGWIESVPPVELMPEPK 153 Query: 181 KRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEE 240 KR+RWL KEEA +L+ PE + + +FAL TGLR+ NI+ LEW Q+D+ R+V W++ ++ Sbjct: 154 KRIRWLTKEEAAKLLSYLPEHQERIARFALLTGLRQGNILGLEWSQVDLVRKVLWIHADQ 213 Query: 241 SKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWL 300 +K +AIG+ L D A +LR+ G+H +WVF + ++ + +W Sbjct: 214 AKGRKAIGIPLPDAAVTLLRELSGQHPQWVFTYKG-------------NRINQVNTLAWR 260 Query: 301 SACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEH 360 A ++AGIE+FR+HDLRH WASW IQ G PL L+E+GGWES++MV RY+H+AP HL + Sbjct: 261 KALKKAGIENFRWHDLRHCWASWHIQDGTPLYALKELGGWESMDMVMRYSHMAPEHLAPY 320 Query: 361 ARKID 365 +K D Sbjct: 321 VQKKD 325 >UniRef50_Q5ZTV4 Prophage dlp12 integrase n=2 Tax=Legionellales RepID=Q5ZTV4_LEGPH Length = 334 Score = 290 bits (741), Expect = 8e-77, Method: Composition-based stats. Identities = 128/364 (35%), Positives = 195/364 (53%), Gaps = 40/364 (10%) Query: 1 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFE 60 M+L ++N W+ + G KRI+ S TK K+QAQ+ HD +LW + ++ Sbjct: 1 MALTKKNGFWWIDVTF-GDKRIRRSTRTKVKQQAQQFHDNFLQDLWSNKHTKLPQQKSWV 59 Query: 61 EACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 +A +RWLEE A K+SL +DK + F + L +I+ I Sbjct: 60 DAVVRWLEESAHKRSLVTDKFHLAFLDPYLGQKTLDEINAELIE---------------- 103 Query: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRN 180 E V+ T + L +I+AIL A ++W+W+ P+ ++ V N Sbjct: 104 ----------FIAQEKERTNVTPTTVNRMLEIIRAILNKAHKEWQWINTMPLFRMRKVEN 153 Query: 181 KRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEE 240 KR+RWL + +A +LI E P LK + F LATGLR+SN+ L+W ++D+ R+ A ++P++ Sbjct: 154 KRIRWLSRGQANKLIQELPNHLKDMAAFTLATGLRQSNVTQLQWSEVDLIRKHALIHPDQ 213 Query: 241 SKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWL 300 SK+ +AI V LN A ++ Q+G H +VF + + + + +W Sbjct: 214 SKTKKAIPVPLNSQAIVIIEKQVGLHPTFVFTY-------------FGKPVTRCNNHAWQ 260 Query: 301 SACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEH 360 A RAGI+DFR+HDLRHTWASW +Q+G L LQ++GGW EMV RYAHL+ +HL Sbjct: 261 KALIRAGIKDFRWHDLRHTWASWHVQNGTSLQELQQLGGWSEYEMVLRYAHLSSDHLKVA 320 Query: 361 ARKI 364 A +I Sbjct: 321 AERI 324 >UniRef50_A1V8M7 Site-specific recombinase, phage integrase family n=22 Tax=root RepID=A1V8M7_BURMS Length = 369 Score = 284 bits (727), Expect = 3e-75, Method: Composition-based stats. Identities = 135/362 (37%), Positives = 207/362 (57%), Gaps = 23/362 (6%) Query: 1 MSLFRRNEI--WYASYSLPGGKRI-KESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDV 57 MSL++RN WY + PGG + + S GT +K AQEL+D+ K ELW KLG P Sbjct: 1 MSLYKRNNSPNWYYRLTPPGGGPVVQGSTGTSNKAHAQELYDRLKVELWNQAKLGHKPRY 60 Query: 58 TFEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKE 117 + +A +R++ ++ SL++ K+ + + H G+ L DI ++ Sbjct: 61 LWNDAVVRYVGDREGLSSLETSKTHLRWLDPHLSGVALADIDRDRVD-----------AI 109 Query: 118 IWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPA 177 ++ + + + + P + T + + ++ A+L AA +W+WL++APV+K Sbjct: 110 AHAKRCEPRVVRTRNGPKPIGGTIGEGTVRRVIGVLMAVLHAAV-EWEWLDRAPVLKRRK 168 Query: 178 VRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVN 237 KRVRW+ +A+RL+ E P L + +F+L TGLR+SN+ LEW Q+D+ RRVAW++ Sbjct: 169 TTPKRVRWITPAQAERLLAELPAHLSDMARFSLETGLRRSNVTGLEWSQVDLARRVAWIH 228 Query: 238 PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKT 297 P+++K+ +AI V L+DTA VLR Q+ K + R P Sbjct: 229 PDQAKARKAITVPLSDTAVDVLRRQLSKRRAAEHIERVFVYRGSAIGQPNT--------A 280 Query: 298 SWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHL 357 +W A +RAGI DFR+HDLRHTWASW +Q G PL VL+E+GGWE++EMV+RYAHL+ +HL Sbjct: 281 AWRKALKRAGIRDFRWHDLRHTWASWHVQRGTPLQVLKELGGWETLEMVQRYAHLSADHL 340 Query: 358 TE 359 Sbjct: 341 AR 342 >UniRef50_D2TXV6 Phage integrase n=3 Tax=root RepID=D2TXV6_9ENTR Length = 341 Score = 283 bits (725), Expect = 6e-75, Method: Composition-based stats. Identities = 135/364 (37%), Positives = 203/364 (55%), Gaps = 40/364 (10%) Query: 1 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFE 60 +S ++R EIW+ S++ P +RI++S T ++++A+EL WR EKLGD+ T++ Sbjct: 6 VSTYKRGEIWWYSFTTPNKQRIRKSAKTTNQQEAKELAALEYNSYWRNEKLGDVSFHTWQ 65 Query: 61 EACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 EA L WL EK ++K + + + ++ +L DI++ I +KTK+I Sbjct: 66 EAVLLWLNEKPERKENRNMLYGLRWLDQYLGKTKLIDINKYLIDEI------KKTKQI-- 117 Query: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRN 180 V +T L I+ +L+ A + L+K P IK+ Sbjct: 118 ------------------SGVKNRTVNAVLQQIRVVLKCAY-EHGLLDKIPPIKLLKEPT 158 Query: 181 KRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEE 240 +R+RWL + E KRL+ E PE LK +V FAL TGLR SNI NL+W Q+D+ RR AW++ +E Sbjct: 159 RRIRWLTEYEEKRLMVELPEHLKPIVNFALNTGLRMSNITNLKWSQVDINRRQAWIHADE 218 Query: 241 SKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWL 300 SK+N+AIG+ LN A ++R+Q G H ++VF + +++ W Sbjct: 219 SKTNQAIGIPLNQAALTIIREQQGHHREYVFTYQG-------------NRIKNAGAKGWR 265 Query: 301 SACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEH 360 A RAG+ DF FHDLRHTWA+ I +G PL VLQE+GGW + VR+YAHL+ L +H Sbjct: 266 KAVYRAGLGDFHFHDLRHTWATRHIMAGTPLYVLQELGGWSKADTVRKYAHLSTQFLQQH 325 Query: 361 ARKI 364 A +I Sbjct: 326 AERI 329 >UniRef50_Q31HE5 Tyrosine recombinase family protein n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31HE5_THICR Length = 341 Score = 283 bits (725), Expect = 7e-75, Method: Composition-based stats. Identities = 127/377 (33%), Positives = 201/377 (53%), Gaps = 41/377 (10%) Query: 1 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFE 60 MS++ RN IW+ + P GKRI+ S GT+ ++QA E K K++LWRV LG+ P + ++ Sbjct: 1 MSIYLRNNIWWTKFVAPDGKRIQRSTGTEQRQQALEFEAKLKSDLWRVHNLGEKPRLLWK 60 Query: 61 EACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 EA +R++ EK +K S ++ S ++ +F + + +I + EI + Sbjct: 61 EAVVRFMREKQNKDST-NEVSIFKYLDRYFGHLYVDEIRRMHV------------DEIIQ 107 Query: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRN 180 +++ VS T + L ++A+L A ++W+ P IK+ Sbjct: 108 TRLKE--------------GVSNATINRLLQKLRAVLNKAHKEWEVKCDPPYIKLLKEPK 153 Query: 181 KRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEE 240 KRVRWL + EA RLI+ PE + + AL TGLR+SN+ L+W+QID +R+ ++ ++ Sbjct: 154 KRVRWLAEPEALRLINALPEYIADMATLALETGLRESNVTLLKWEQIDFSQRIIYIEGDD 213 Query: 241 S-KSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSW 299 KS +A V L+DTA +V++ Q+GKH VF +R + ++ Sbjct: 214 ILKSEQAFVVPLSDTAVEVIKRQVGKHPTRVFTFRG-------------DPIRRANTKAF 260 Query: 300 LSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTE 359 + C GIEDFR+HDLRHTWA+W +Q G PL VLQE+GGW +MV+RYAH HL + Sbjct: 261 KNTCAELGIEDFRWHDLRHTWATWHVQRGTPLEVLQELGGWTDYKMVKRYAHFTHQHLKQ 320 Query: 360 HARKIDDIFGDNVPNMS 376 + + + Sbjct: 321 YVNRAPSGLATISATSA 337 >UniRef50_Q47H88 Phage integrase n=1 Tax=Dechloromonas aromatica RCB RepID=Q47H88_DECAR Length = 338 Score = 283 bits (724), Expect = 9e-75, Method: Composition-based stats. Identities = 127/370 (34%), Positives = 206/370 (55%), Gaps = 43/370 (11%) Query: 1 MSLFRRNEI--WYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 MSLF+R + W+ + G++++ S GT DK +AQE HD+ KA++W +LG + Sbjct: 1 MSLFKRKDSSCWWVKI-IIDGRKVQRSTGTDDKIKAQEFHDRLKAQMWEQNRLGVKARRS 59 Query: 59 FEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEI 118 ++EA +RWLEE ++K + + DK ++ + + + L +I+ I S + K Sbjct: 60 WKEAVVRWLEETSEKATHNEDKRKLIWLDTYLGKLMLDEITLDVIDSVRAAKLKEAAKA- 118 Query: 119 WKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAV 178 T ++LA++++IL A +W+W++K P +++ Sbjct: 119 --------------------------TTNRYLALMRSILLRARDEWEWIDKVPKVRLFKE 152 Query: 179 RNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNP 238 R R L +E+A +L++E P+ + VV FALATGLR+SN++ LEW QI++++R AW++ Sbjct: 153 SASRERSLTREQAGKLLEELPQHQRDVVLFALATGLRQSNVLQLEWSQINLEQRHAWIHA 212 Query: 239 EESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTS 298 +SK+ R I + LN+ A VL Q GKH VF + + + + Sbjct: 213 WQSKNRRPISIPLNEAAYSVLIRQKGKHESRVFTFRG-------------KPLESANTRA 259 Query: 299 WLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLT 358 W A R+GI++FR+HDLRHTWA+W Q+G P LQ +GGW + MV RYAHLAP+HL Sbjct: 260 WRKALLRSGIDNFRWHDLRHTWATWQRQAGTPTHELQRLGGWRTGAMVERYAHLAPDHLA 319 Query: 359 EHARKIDDIF 368 E A +++ + Sbjct: 320 EAASRLNSVI 329 >UniRef50_Q45YI6 Prophage integrase n=5 Tax=root RepID=Q45YI6_9CAUD Length = 441 Score = 280 bits (716), Expect = 7e-74, Method: Composition-based stats. Identities = 128/369 (34%), Positives = 208/369 (56%), Gaps = 38/369 (10%) Query: 1 MSLFRR--NEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 M ++R N W+ S+ G RI++S GT D+R A+EL K ++ WR +KLG+ P VT Sbjct: 49 MRFYKRQKNGPWWFDLSI-DGSRIRQSSGTSDRRAAEELAAKVASDYWRQKKLGERPAVT 107 Query: 59 FEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEI 118 ++ A + WL++ ++SL++ K R+ + + +G +++I +I + + Sbjct: 108 WDAAVVHWLKQNQHQRSLETTKQRLRWLTDQLKGENVRNIDRERIQALIE---------- 157 Query: 119 WKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAV 178 K Y PV+ T +H+A + IL + W++ P I+ Sbjct: 158 -----------TKAAEKYRGSPVAGATVNRHMAALSVILHHCHAE-GWIDAVPPIRKLRE 205 Query: 179 RNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNP 238 + R+ WL + +A+RL++E P L+ + +FALATGLR+SN+ LEW Q+D +R +AW++ Sbjct: 206 NSARLTWLTRAQAQRLLEELPTHLRQMARFALATGLRESNVRLLEWAQVDRERALAWIHA 265 Query: 239 EESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTS 298 +++K+ + I V LN+ A VLR+Q G+H ++VFV+ A + + Sbjct: 266 DQAKAGKVISVPLNEDALGVLREQQGQHKRYVFVYKGA-------------PIGRIYNHA 312 Query: 299 WLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLT 358 W AC RAG+ RFHDLRHTWASW +Q+G PL +LQ++GGW S +MV RYAHL +H+ Sbjct: 313 WQKACVRAGLSGLRFHDLRHTWASWHVQAGTPLPILQQLGGWASYQMVLRYAHLGRDHVA 372 Query: 359 EHARKIDDI 367 +A I + Sbjct: 373 AYADNIGTL 381 >UniRef50_A0YFT5 Phage integrase n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YFT5_9GAMM Length = 346 Score = 277 bits (709), Expect = 5e-73, Method: Composition-based stats. Identities = 120/369 (32%), Positives = 189/369 (51%), Gaps = 42/369 (11%) Query: 2 SLFRRNEI--WYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTF 59 L++R W+ LP G+R+ +S K A E KA+ ++ + G + D T+ Sbjct: 6 GLYQREGTPYWWVDLVLPDGRRVCQSTRLKCLNAANEFVIDLKADAYKRSREGIVHDKTW 65 Query: 60 EEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIW 119 +A +R+L E A KKSL +D+ ++ + L+ +S ++ + + + Sbjct: 66 RQAVVRYLAENATKKSLQADRDNLKKLDAFVGDLLLRQVSMDSLWPFIHQRRDD------ 119 Query: 120 KQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVR 179 V+ T + L +++ I A +W WLE+ P I++ Sbjct: 120 --------------------GVTDATINRALEVVRRIFHLARDEWCWLERFPKIRMLKEP 159 Query: 180 NKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPE 239 +R+R+L + E RL++E P+ ++ VV+FA+ATG R I+ LEW ++D RRVAW++ Sbjct: 160 KRRIRFLRRPEVNRLLEELPDHMRPVVQFAVATGCRMGEILKLEWNRVDFDRRVAWLDHG 219 Query: 240 ESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSW 299 +K+ G+ LN+ A LR G+H +W F +A G+ W Sbjct: 220 TTKNGDGRGIPLNNDAVLALRSLHGQHQRWCFTFRGKPIKAIGSC--------------W 265 Query: 300 LSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTE 359 A RA IE+FRFHDLRHTWASW + SG L L E+GGW+S EMV RYAHLAP HL+ Sbjct: 266 KRALERAQIENFRFHDLRHTWASWHVMSGTSLQELMELGGWKSYEMVLRYAHLAPEHLSS 325 Query: 360 HARKIDDIF 368 A +I+ ++ Sbjct: 326 AAARIEQVW 334 >UniRef50_B0USU3 Phage integrase family protein n=6 Tax=Pasteurellaceae RepID=B0USU3_HAES2 Length = 351 Score = 277 bits (708), Expect = 5e-73, Method: Composition-based stats. Identities = 128/386 (33%), Positives = 211/386 (54%), Gaps = 41/386 (10%) Query: 1 MSLFRR--NEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 MS++RR + W+ + P GKRI+ S GT K++AQ HD+ KAE W++++L + P+ Sbjct: 1 MSIYRRTKDGPWWVDITTPSGKRIRRSAGTTVKKEAQHYHDQLKAETWKIDRLNEKPEYI 60 Query: 59 FEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEI 118 FEEA L ++ K + K ++W E F+G L ++ +I + + Sbjct: 61 FEEALLLYVRSAEGLKDTSTKKRHAKYWREKFQGRVLSSLTTQEILNHIP---------- 110 Query: 119 WKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAV 178 + KP++ TK K++ I IL A + ++K P + A Sbjct: 111 -------------TRNMNTNKPLTNSTKNKYIQSILRILNLAHQA-GLVDKVPHLPKNAE 156 Query: 179 RNKRVRWLEKEEAKRLIDECP-EPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVN 237 RVRW+ KE+AK L+ + + ++++ FAL TG R++ I+ + W +ID R+VA V Sbjct: 157 PPIRVRWITKEQAKDLLAKLNSDWMRAICAFALMTGARRTEILTMTWDKIDFVRKVAIVT 216 Query: 238 PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKT 297 + +KS +A + L+D A +L+ GKH K+VFV + K D ++ Sbjct: 217 NDVAKSGKARSLLLSDEAILLLKSLRGKHAKYVFVGRENNKLNDI------------NRK 264 Query: 298 SWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHL 357 ++ +A R+ + DF FHDLRHTWASW +Q+G PL L+E+GGWE++EMV++YAHL +HL Sbjct: 265 AFNAAARKCFLLDFHFHDLRHTWASWHVQAGTPLFTLKELGGWETLEMVKKYAHLNADHL 324 Query: 358 TEHARKI--DDIFGDNVPNMSHSEIM 381 EHA K+ + F +++H +++ Sbjct: 325 LEHANKVEFNGTFTAQSKSVTHLKLI 350 >UniRef50_UPI0001A444C2 Tyrosine recombinase xerD n=1 Tax=Pectobacterium carotovorum subsp. brasiliensis PBR1692 RepID=UPI0001A444C2 Length = 348 Score = 274 bits (701), Expect = 3e-72, Method: Composition-based stats. Identities = 125/360 (34%), Positives = 193/360 (53%), Gaps = 39/360 (10%) Query: 1 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFE 60 M ++RR + ++ S P G+RI+ S GT ++ +AQE HDK K E+W+V ++G + D TFE Sbjct: 1 MPIYRRGKTYWVDISTPDGERIRRSAGTTERAKAQEYHDKLKHEVWQVARIGKIADRTFE 60 Query: 61 EACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 E + L + D+ ++ + +WL F+G + IS +I + + K Sbjct: 61 ELIILALRDAEDQSCFENKQIYARYWLTVFDGRIISSISGEEITNKLPTHSTAKNC---- 116 Query: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRN 180 +S T+ ++ A I L A + W+ P + Sbjct: 117 -------------------KLSNATRNRYRAFIIRALSLAVKS-GWIRNMPYTSMQREPK 156 Query: 181 KRVRWLEKEEAKRLIDECP-EPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPE 239 RVRW+EK +A+ LI+ + +K VV FAL TG RK I +L+W +++ RR+A V + Sbjct: 157 VRVRWIEKSQARALIESLRLDWMKRVVSFALLTGARKGEIFSLKWDSVNLSRRIAIVTAD 216 Query: 240 ESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSW 299 +KS RA + LND A K++ + G+ +VF S VR + I+ +T + Sbjct: 217 NAKSGRARPLPLNDDAVKII-NACGRDSDYVF------------SANGVRIVEIN-RTDF 262 Query: 300 LSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTE 359 +A R +GI DFRFHDLRHTWASW +Q+G PL L+E+GGWE +EMV +YAHL+ HL + Sbjct: 263 CNALRISGIADFRFHDLRHTWASWHVQNGTPLMTLKELGGWEKLEMVNKYAHLSTEHLRQ 322 >UniRef50_A1AN30 Phage integrase family protein n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1AN30_PELPD Length = 367 Score = 268 bits (685), Expect = 3e-70, Method: Composition-based stats. Identities = 95/373 (25%), Positives = 169/373 (45%), Gaps = 38/373 (10%) Query: 2 SLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEK----LGDLPDV 57 ++RR + ++ +Y GK+ ES +K K A L RK E+ Sbjct: 7 GIYRRGKTFWITYMGVDGKQQWESTRSKLKADADYLLACRKKEVAEGITPVTFNRKKYTT 66 Query: 58 TFEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKE 117 TF++ ++LE ++ S R+ F +RL DI+ ++ E Sbjct: 67 TFDQLAEKYLEYCKAQRDYKSKAGRVRRLQRTFGEMRLIDITLEEL-------------E 113 Query: 118 IWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEK-----APV 172 ++ ++ K+ VS T + L +K + AE+ W + Sbjct: 114 RYQSARCTEAKQPKKEGGVSSGAVSPATVNRELTALKNMFTKAEQ-WGLIPDSTLKTVRK 172 Query: 173 IKIPAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRR 232 +++ N+R+R+L E L+D C L+ +V FAL TG R+ I++L W +D++ Sbjct: 173 VRLTKENNRRLRFLAVAEMTALVDSCSRGLREIVVFALNTGCRRGEILSLTWDHVDLKHG 232 Query: 233 VAWVNPEESKSNRAIGVALNDTACKVLRDQIGK-HHKWVFVHTKAAKRADGTSTPAVRKM 291 ++ +SK+ + + +N + + + + +VF + R Sbjct: 233 --FIRIADSKNGESRDIPINAALADMFKGVVRRIDSPYVFTNPDTGTR------------ 278 Query: 292 RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAH 351 D K S+ +ACRRA I +F FHDLRHT+AS L+ +GV L+ + + G +S+ M RY+H Sbjct: 279 YQDVKRSFATACRRAAIMNFHFHDLRHTFASHLVMNGVDLTTVSRLLGHKSLTMTLRYSH 338 Query: 352 LAPNHLTEHARKI 364 LAP+HL + ++ Sbjct: 339 LAPDHLKKAVERL 351 >UniRef50_Q2LV83 Phage integrase family protein n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LV83_SYNAS Length = 364 Score = 266 bits (679), Expect = 1e-69, Method: Composition-based stats. Identities = 106/390 (27%), Positives = 185/390 (47%), Gaps = 51/390 (13%) Query: 1 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLP--DVT 58 M L++R +W+ S+S G++ + S T+D++ A + DK K ++ + LP Sbjct: 1 MGLYKRGTVWWMSFS-HNGEQFRRSTETEDRKLAIRIFDKLKGDIAEGKWFEKLPGDSYK 59 Query: 59 FEEACLRWLEEKAD----KKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRK 114 F++ +++ E + S DKS + +F L +++ A I + + Sbjct: 60 FKDLMDKYMTEYSAVNKAASSYKRDKSIVTQLKSYFGEKYLTELTPAMISDYKVKRRSD- 118 Query: 115 TKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIK 174 VS++T L + A R+W + PV K Sbjct: 119 -------------------------GVSSRTINYELITMSHAFNLAIREWGLANENPVSK 153 Query: 175 IPAVR--NKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRR 232 + R NK RWL EE L+ E P+ L+ ++ FA+ TGLR+S I++L+W Q+DM+RR Sbjct: 154 VKKDRVTNKIERWLTSEEETNLLKESPKWLQDIIIFAIHTGLRQSEILDLKWSQVDMKRR 213 Query: 233 VAWVNPEESKSNRAIGVALNDTACKVLRDQIGKH---HKWVFVHTKAAKRADGTSTPAVR 289 ++ E K+ + LN+TA VL+++ +VF +T ++ + Sbjct: 214 TVTIH--EQKNRCIDTLPLNETAMTVLKNRHNPELPLEGYVFPNTLGDRKGNRLL----- 266 Query: 290 KMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRY 349 ++ A ++A I +FRFHDLRHT+A+ LI+ G L +Q++G W+++ MV+RY Sbjct: 267 ------LKAFYVALKKANISNFRFHDLRHTFATRLIRKGADLYTVQKLGRWKTVTMVQRY 320 Query: 350 AHLAPNHLTEHARKIDDIFGDNVPNMSHSE 379 AH L +DD+ + N+S S+ Sbjct: 321 AHHHTESLRAAIEMMDDVEKPIITNLSQSQ 350 >UniRef50_C5AEN7 Prophage integrase n=19 Tax=Burkholderia RepID=C5AEN7_BURGB Length = 355 Score = 265 bits (678), Expect = 1e-69, Method: Composition-based stats. Identities = 118/368 (32%), Positives = 197/368 (53%), Gaps = 30/368 (8%) Query: 1 MSLFR--RNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 MS+ + ++ IW+ S P G RI+ S T+D++ AQE HD+ K++LWR +KLG+ D T Sbjct: 1 MSIRKHQKSGIWHIDISAPDGTRIRRSAETRDRKAAQEYHDRLKSDLWRQDKLGERADRT 60 Query: 59 FEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEI 118 FEEA +R+L+ A ++ + +W E F ++ ++ +I+ A+ Sbjct: 61 FEEAAVRFLQMCAGQRDYAGKLRHVLYWRERFGAAPVRLLTAERIFDALP---------- 110 Query: 119 WKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAV 178 K + K ++ T+ +++ I+ +L +W+WL++ P ++ Sbjct: 111 ----------THKLVNGAPTKLLAPGTRNRYINTIRRMLNLCL-EWEWLDRVPKLRRFEE 159 Query: 179 RNKRVRWLEKEEAKRLIDECP-EPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVN 237 + RVRW R+I + ++ A+ATG+R+S + L Q+D+ + AW+ Sbjct: 160 PDIRVRWETPAVITRMIGALRLDWMRDAAIVAVATGMRESELFGLRLSQLDLAQCNAWIT 219 Query: 238 PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKT 297 +KS RA V LN+ A VL + +F T+ R +G + ++ K Sbjct: 220 HAGAKSKRARSVPLNEDAMSVLERRARAATDLIF--TRGYTRDNGPP----KLIQQIDKR 273 Query: 298 SWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHL 357 + AC AG+ DF +HDLRHTWASW +Q G PL VL+E+GGWE++ MV++YAHLAP+HL Sbjct: 274 DFARACAAAGMVDFNWHDLRHTWASWHVQHGTPLMVLKELGGWETVAMVQKYAHLAPSHL 333 Query: 358 TEHARKID 365 +HA ++ Sbjct: 334 AQHAANVN 341 >UniRef50_UPI000196D4B7 site-specific recombinase, phage integrase family protein n=1 Tax=Neisseria mucosa ATCC 25996 RepID=UPI000196D4B7 Length = 289 Score = 264 bits (674), Expect = 4e-69, Method: Composition-based stats. Identities = 136/331 (41%), Positives = 195/331 (58%), Gaps = 43/331 (12%) Query: 45 LWRVEKLGDLPDVTFEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIY 104 +WR + LGD P V ++EACLRWL+EK KKSL D+++I L F G+ L +++ I Sbjct: 1 MWRQQHLGDKPKVLWDEACLRWLDEKQGKKSLVHDETKIRR-LTAFRGLYLHHMTKTVIM 59 Query: 105 SAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDW 164 + ++++ S TK ++LA ++A+L A +DW Sbjct: 60 AEIAKLEG-----------------------------SNATKNRYLAFVQALLNKAAKDW 90 Query: 165 KWLEKAPVIKIPAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEW 224 ++L+ AP + KR+RWL +EA+RLI P+ + ++V F+L TGLRKSN+ L+W Sbjct: 91 EYLDGAPKLPRYQEAKKRIRWLTPQEAERLIAALPDYIAAMVVFSLNTGLRKSNVFGLKW 150 Query: 225 QQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTS 284 QQID +R+VAW + +E+KS RA+GVALND A VL Q GKH ++VF + + Sbjct: 151 QQIDFKRKVAWFHHDETKSGRALGVALNDAAVAVLLKQRGKHPEYVFTNNRC-------- 202 Query: 285 TPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIE 344 K D K W A + AGIE+FR+HDLRHTWASWL+Q+GV L L+EMGGW + Sbjct: 203 -----KPVKDVKKPWKKALQDAGIENFRWHDLRHTWASWLVQNGVSLYALKEMGGWSDFD 257 Query: 345 MVRRYAHLAPNHLTEHARKIDDIFGDNVPNM 375 MV+RYAHLAP HL HA ++ + + Sbjct: 258 MVQRYAHLAPEHLHRHAGLLNSLLDTKWTQL 288 >UniRef50_C9MEM4 Prophage integrase n=1 Tax=Haemophilus influenzae NT127 RepID=C9MEM4_HAEIN Length = 341 Score = 263 bits (673), Expect = 6e-69, Method: Composition-based stats. Identities = 114/367 (31%), Positives = 194/367 (52%), Gaps = 39/367 (10%) Query: 1 MSLFR-RNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTF 59 M + + +N +W ++ P G+R++ S T DK+ AQ LHDK K E W+V++L P+ T Sbjct: 1 MPIRKNKNGVWQIDFTTPSGERVRCSSKTTDKKLAQHLHDKLKHEAWQVDQLNKKPEKTV 60 Query: 60 EEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIW 119 E+A + L++ KK + ++W + L ++ I +A+ Sbjct: 61 EQALILLLKDAEHKKDKLTKIQHAKYWRDEIGNKLLSSLTSEDIQNAIP----------- 109 Query: 120 KQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVR 179 +R GK +S T+ ++ + I + A++ W++ P I + Sbjct: 110 ----THVVRTGKI--------LSPATQNRYRSSIMRAINLAKQA-GWIDVVPYIAKNSEP 156 Query: 180 NKRVRWLEKEEAKRLIDECP-EPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNP 238 KR+RW+ ++EA+RL+D +K V +FAL TG R + I+++ W +I+ ++A V Sbjct: 157 KKRIRWITEKEAERLLDSLNLNWMKDVCQFALLTGARMTEILSMTWDKINFANKMAIVTG 216 Query: 239 EESKSNRAIGVALNDTACKVLRDQIG-KHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKT 297 + +KS R + L+D A ++++++ + +VF R D S+ Sbjct: 217 DIAKSGRGRSLPLSDDAINLIKERMKYQVSPYVFHSGTGKLRDDI------------SRR 264 Query: 298 SWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHL 357 + A +RA I++FRFHDLRHTWASW IQ G PL VL+E+GGWE+IEMV++YAHL +HL Sbjct: 265 DFKRALQRANIKNFRFHDLRHTWASWHIQRGTPLMVLKELGGWETIEMVQKYAHLNADHL 324 Query: 358 TEHARKI 364 + ++ Sbjct: 325 LSYVNQV 331 >UniRef50_Q1Q549 Similar to site-specific tyrosine recombinase n=2 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q549_9BACT Length = 351 Score = 249 bits (637), Expect = 9e-65, Method: Composition-based stats. Identities = 98/375 (26%), Positives = 172/375 (45%), Gaps = 50/375 (13%) Query: 3 LFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPD--VTFE 60 +++R+ IW+ G++I+ SL TK+K+ A+ + K + EL + TF+ Sbjct: 1 MYKRDGIWWTCIR-HRGRKIQRSLETKNKKLAESIEAKLRTELIEGKYFDKYEGDLKTFK 59 Query: 61 EACLRWLEEKADKKSLDSDKSR---IEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKE 117 + R+++E A K SL+ KS + L F + L I+ K+ N K Sbjct: 60 DLMERFMKEHAPKVSLNMQKSYTTSAKHLLSFFGDLSLLAITPKKVNDYKVSRKNLGKK- 118 Query: 118 IWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPA 177 T K LAM+ A ++W+W+ P KI Sbjct: 119 -------------------------PATINKELAMLSKAFCLAVKEWEWIRDNPASKISK 153 Query: 178 VR--NKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAW 235 + N+R RWL +E KRL++ PE L ++ F L TGLR+ +++L W ++D+ R+V Sbjct: 154 EKEANERDRWLSDDEEKRLLENSPEWLSDIIVFDLHTGLRQDELLSLTWDRVDLFRKVII 213 Query: 236 VNPEESKSNRAIGVALNDTACKVLRDQ---IGKHHKWVFVHTKAAKRADGTSTPAVRKMR 292 + +ESK+ + + LN + +L ++ +VF S+ + R Sbjct: 214 I--QESKNGKPRTIPLNQISLDILMEKTKVRSLKGDFVFP-----------SSVMTKMNR 260 Query: 293 IDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHL 352 + ++ A +A I++F FHD+RH +A+ L Q GV + + ++ G +I M +RYAH Sbjct: 261 RNLVRAFDIAKEKASIQNFHFHDVRHCFATRLAQRGVDIYRISKLLGHLNITMTQRYAHH 320 Query: 353 APNHLTEHARKIDDI 367 P L ++ + Sbjct: 321 CPESLRGGIEVLEKV 335 >UniRef50_C6HUB8 Phage integrase family protein n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HUB8_9BACT Length = 347 Score = 248 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 106/385 (27%), Positives = 179/385 (46%), Gaps = 52/385 (13%) Query: 1 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLP--DVT 58 M L++R +W+ +S+ GK+I+ S GT +++ A +++ K E+ + LP + T Sbjct: 1 MGLYKRGALWWMRFSVQ-GKQIRRSTGTSERKLADKVYKKVLGEIAEGDWFDRLPGEEKT 59 Query: 59 FEEACLRWLEEKAD----KKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRK 114 E ++LEE + KS DK+ L+ F + L +I +I+ + Sbjct: 60 LSELFDKYLEEHSKPNKSSKSYIRDKAISLRMLKEFGDVTLIEIGTEQIFDYKKKRREEN 119 Query: 115 TKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIK 174 ++ + K +A ++ A W WLE PV + Sbjct: 120 --------------------------LAPASLNKEIAFLRHAFEMAVL-WGWLEVNPVSR 152 Query: 175 IP--AVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRR 232 IP V+N+ RWL EE +RL+ CPE L+ +V FAL TG R++ +++L W Q+D R+ Sbjct: 153 IPREKVKNRMERWLTGEEEERLLKACPEWLRDMVIFALNTGFRQNEMLSLTWNQVDWDRK 212 Query: 233 VAWVNPEESKSNRAIGVALNDTACKVLRD---QIGKHHKWVFVHTKAAKRADGTSTPAVR 289 + + K+N V +N+ A VL+ VF+ + TP + Sbjct: 213 A--ILFWDQKNNGRDTVPVNEKAIDVLKRIGKVKSLSSGHVFLTSNG--------TPFIA 262 Query: 290 KMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRY 349 + + S+ A +A I +FR+HDLRHT+A+ L+ +GV L +Q +G W S+ MV RY Sbjct: 263 R---NVVRSFSLALEKAKITNFRWHDLRHTFATRLVHAGVDLYTVQRLGRWRSLSMVMRY 319 Query: 350 AHLAPNHLTEHARKIDDIFGDNVPN 374 AH L ++ + N+ Sbjct: 320 AHHNLESLRTGMEAVNRLASTNLAQ 344 >UniRef50_Q9T1P3 Integrase n=4 Tax=root RepID=Q9T1P3_BPD3 Length = 369 Score = 248 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 91/393 (23%), Positives = 169/393 (43%), Gaps = 54/393 (13%) Query: 4 FRRNEI--WYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEE 61 ++RN+ W+ S+ GK ++ S GT D A+ L + +A+ W+ +++G P TFEE Sbjct: 3 YKRNDSAYWWISFKSATGKLVRRSSGTADYSAAKALEQQERAKAWKEKEMGVNPPRTFEE 62 Query: 62 ACLRWLEE-KADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 + +L+ + ++S ++ RI+ E+F G + D+ I + + Sbjct: 63 VIIPYLQHARQHQRSYETTVHRIKPLREYFAGRVVNDLGGQDIRGYGAHRLD-------- 114 Query: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIP-AVR 179 S T + LA + A + + +W PV Sbjct: 115 ------------------AGASPATINRELAALSAAINHCNTELEWALPNPVKGRKMREA 156 Query: 180 NKRVRWLEKEEAKRLIDECP-----EPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVA 234 R RWL + E + L L+ ++ A+ TG R+ ++ LEW+++D R+ Sbjct: 157 EGRDRWLTRAEVEALCRAARGQKFGPMLEDFIRLAVNTGCRREEMLGLEWRRVDFANRLI 216 Query: 235 WVNPEESKSNRAIGVALNDTACKVLRDQIG------KHHKWVFVHTKAAKRADGTSTPAV 288 ++ +K+ + + +N+ A L+ ++ WVF + Sbjct: 217 YLEASHTKAGKRRSIPINEGAMAALKRRMAFRSETSPECPWVFARANGDR---------- 266 Query: 289 RKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRR 348 I + AC+ A I DF HDLRHT A+WL+ +GVPL+ ++++ G ++ M R Sbjct: 267 ---VISLSAGFKQACQAAKIADFTIHDLRHTCAAWLVSAGVPLADVRDLLGHSTVAMTER 323 Query: 349 YAHLAPNHLTEHARKIDDIFGDNVPNMSHSEIM 381 YAHLAP + + +D + + H++ Sbjct: 324 YAHLAPARVRDAVGVLDQVREGRISRSVHADNP 356 >UniRef50_B5YIK4 Site specific recombinase n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YIK4_THEYD Length = 345 Score = 246 bits (629), Expect = 9e-64, Method: Composition-based stats. Identities = 106/373 (28%), Positives = 179/373 (47%), Gaps = 51/373 (13%) Query: 1 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFE 60 M L++R IW+ S ++ GK+ + S T D+++A E++ K EL K + ++F Sbjct: 1 MGLYKRGNIWWFSVTIK-GKQFRFSTKTTDRKKATEIYAKALLELDNPTKDVEN-QISFG 58 Query: 61 EACLR-WLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIW 119 E +L + S S K + E F+ I + I+ I Sbjct: 59 EFFENQYLPFSERQASHQSKKYYFKVIPEWFKKIPINQITTRDI---------------- 102 Query: 120 KQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWL----EKAPVIKI 175 + +Q + KG+ + + + +A IK LR A ++ +K Sbjct: 103 -ELLQGDLLKGR----------TPASVNRIIATIKHSLRKAYEWELTEEETLKRVQRVKP 151 Query: 176 PAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAW 235 +R+R+L EE +LI+ LK ++ AL TG+RK I++L W QID++ + Sbjct: 152 LKGEVQRLRFLSLEECHKLIEVAEPHLKPIIITALNTGMRKGEILSLTWSQIDLKHG--F 209 Query: 236 VNPEESKSNRAIGVALNDTACKVLRDQIGKH---HKWVFVHTKAAKRADGTSTPAVRKMR 292 ++ E++K+ + +NDT + RD I +VF++ + KR Sbjct: 210 IHLEKTKNGERRDIPMNDTLKILFRDLIKNRRLDSDYVFLNPETGKRL------------ 257 Query: 293 IDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHL 352 D K S+ +AC+RAGI DFRFHDLRHT+AS LI +GV L +QE+ G ++I+M +Y+HL Sbjct: 258 TDIKRSFRTACKRAGITDFRFHDLRHTFASHLIMNGVDLKTVQELLGHKTIKMTLKYSHL 317 Query: 353 APNHLTEHARKID 365 + H + ++ Sbjct: 318 SKAHKEKAVNTLN 330 >UniRef50_C0DT82 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DT82_EIKCO Length = 285 Score = 244 bits (624), Expect = 3e-63, Method: Composition-based stats. Identities = 128/308 (41%), Positives = 187/308 (60%), Gaps = 45/308 (14%) Query: 67 LEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAA 126 ++E DKKSLD DK +I L G+ L D++ I+ V++ Sbjct: 1 MQENQDKKSLDGDKDKIR-LLPELRGVLLSDLTRDFIHQVVNQ----------------- 42 Query: 127 IRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKRVRWL 186 K S+ TK ++ A+I+AIL +W WL+KAP +K+ KR+RWL Sbjct: 43 ------------KNCSSSTKNRYFALIRAILNKCVNEWDWLDKAPKLKLHKEPKKRIRWL 90 Query: 187 EKEEAKRLIDECP--EPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSN 244 EEA+RL++ ++ +V F+LATGLR++N++NL+W+QID++R+VAW+ P+++K+ Sbjct: 91 YPEEAQRLVNALDSLPYMQHLVIFSLATGLRQANVLNLKWEQIDLRRQVAWIYPDQAKAG 150 Query: 245 RAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACR 304 +AIGV LN TA +VL D+ + +VF H+K A +++ S W A Sbjct: 151 KAIGVPLNHTAMQVLMDR-PRVSDYVFTHSKGA------------RVKSISSRVWREALE 197 Query: 305 RAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKI 364 +AGI DFR+HDLRHTWASWL+Q G PL+ L+EMGGWES+EMV+RYAHLAP HL++HAR I Sbjct: 198 KAGITDFRWHDLRHTWASWLVQQGTPLAALKEMGGWESVEMVQRYAHLAPEHLSQHARLI 257 Query: 365 DDIFGDNV 372 D + Sbjct: 258 DSGIAPGI 265 >UniRef50_A8UUR8 Phage integrase family protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UUR8_9AQUI Length = 351 Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats. Identities = 102/369 (27%), Positives = 166/369 (44%), Gaps = 43/369 (11%) Query: 3 LFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLP-DVTFEE 61 L +R +++Y + + G+R E +G K A+E+ ++ ++ + R E + TF + Sbjct: 8 LRKRGKVFYFEF-MYKGQRYYEKIGVVSKTVAKEIANEIRSRIIRGEYIPQKERKTTFSD 66 Query: 62 ACLRWLEEKADK-----KSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTK 116 A ++E K KS + + R E F +L IS + S + Sbjct: 67 AVRVYIEWYRKKSTAREKSKEENIRRARRLEEFFGSRKLSQISTFLVESYKKKRLEE--- 123 Query: 117 EIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVI-KI 175 V QT L ++ +ILR A+ + + P I K Sbjct: 124 -----------------------GVKPQTINMELNILGSILRRAKEAGLFDGELPKIEKF 160 Query: 176 PAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAW 235 +R+R+L + EA+RLI CPE K VV FAL TGLR I +L W+ +D +R V Sbjct: 161 RNADRERLRFLSEREAQRLISACPEWFKPVVIFALNTGLRAGEIFSLRWEDVDFERGVIT 220 Query: 236 VNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDS 295 V SKS + + +N T K+L+ K H ++F + + Sbjct: 221 VREASSKSGKVRKLPMNATVKKLLQGLERKEHGYIFTNRFGLP---------YKYEDKTY 271 Query: 296 KTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPN 355 + + +AC +AGI+DFRFHDLRHT+ASW+ + + +Q + G S + +RYAHL + Sbjct: 272 RRVFKTACEKAGIKDFRFHDLRHTFASWVAMNSKDIYAVQNLLGHSSPSVTKRYAHLTDD 331 Query: 356 HLTEHARKI 364 +L + Sbjct: 332 YLRSVVESV 340 >UniRef50_A6VKB4 Phage integrase family protein n=9 Tax=Pasteurellaceae RepID=A6VKB4_ACTSZ Length = 448 Score = 234 bits (596), Expect = 5e-60, Method: Composition-based stats. Identities = 113/341 (33%), Positives = 176/341 (51%), Gaps = 38/341 (11%) Query: 26 LGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRWLEEKADKKSLDSDKSRIEF 85 T+ +++AQELHDK KAELW + KL P FEEA L ++E+ +KK D+ + + Sbjct: 123 TKTEVRKKAQELHDKIKAELWDLAKLNKTPPRMFEEALLLYVEDAKNKKDFDTSRRHAIY 182 Query: 86 WLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQT 145 W F G LK+IS I + + K +S T Sbjct: 183 WRAVFSGWELKNISGEDINANLP-----------------------THSTTHKKALSPST 219 Query: 146 KAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKRVRWLEKEEAKRLIDECP-EPLKS 204 K ++ I ++ A ++ W+++ P + RVRW+ K +A LI +K+ Sbjct: 220 KNRYRTSILRVMSLAYKN-GWVDRVPYVPKYVEPKVRVRWITKAQAAALIANLNLAWMKN 278 Query: 205 VVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQ-I 263 V FAL TG R + I++L W ++D R +A V+ + +KS +A + LN A +L++ Sbjct: 279 VCSFALLTGARMTEILSLTWDKVDFDRSIAIVSNDVAKSGKARALPLNKIALDLLKNLKQ 338 Query: 264 GKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASW 323 + +++VF H KR + A ++GI++FRFHDLRHTWASW Sbjct: 339 NRRNEYVF-HRDTDKRIGRIDW-----------HDFHQALNKSGIDNFRFHDLRHTWASW 386 Query: 324 LIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKI 364 +Q+G PL L+EMGGWE++EMV++YAHL H+ E+A + Sbjct: 387 HVQAGTPLYTLKEMGGWETLEMVKKYAHLNATHMLEYAENV 427 >UniRef50_B0U2H0 Phage integrase n=4 Tax=Xylella fastidiosa RepID=B0U2H0_XYLFM Length = 276 Score = 233 bits (595), Expect = 8e-60, Method: Composition-based stats. Identities = 109/310 (35%), Positives = 172/310 (55%), Gaps = 40/310 (12%) Query: 59 FEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEI 118 +++A LRWL EK+ K + D +++ + +F G +L I I Sbjct: 6 WDDAALRWLSEKSRKATAHEDAAKLRWLASYFAGKKLAAIDSDLILR------------- 52 Query: 119 WKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAV 178 + + S T ++LA+I++ILR A W W+++ P I + Sbjct: 53 --------------VATLKAAETSPSTANRYLALIRSILRRAFDIWLWIDRCPHISLFPE 98 Query: 179 RNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNP 238 KRVRWL +A+ L+ E P +++V FAL+TGLR++N++ L W Q+D+ R+V + Sbjct: 99 PTKRVRWLTSVQARSLLSELPLHQRAMVIFALSTGLRQANVLKLRWDQVDLVRKVLRIPA 158 Query: 239 EESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTS 298 +++K +AI + L+ A +VL+ Q G+H++WVF + R +R + + Sbjct: 159 DQAKGRQAIRIPLSLHALQVLQAQRGQHYEWVFTYCG-------------RSIRWVNTRA 205 Query: 299 WLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLT 358 W A +RAGI+DFR+HDLRHTWASW QSG PL VLQ++GGW+S MVRRYAHL P+H + Sbjct: 206 WHQALQRAGIQDFRWHDLRHTWASWHAQSGTPLYVLQDLGGWQSESMVRRYAHLTPSHYS 265 Query: 359 EHARKIDDIF 368 +A + + Sbjct: 266 AYAEAVTEFL 275 >UniRef50_B6ALQ5 Integrase n=1 Tax=Leptospirillum sp. Group II '5-way CG' RepID=B6ALQ5_9BACT Length = 367 Score = 233 bits (593), Expect = 1e-59, Method: Composition-based stats. Identities = 100/374 (26%), Positives = 158/374 (42%), Gaps = 49/374 (13%) Query: 2 SLFRR---NEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 +F R + IW+ Y+ GK I+ +G K A+ + + +A++ + P V Sbjct: 9 GVFERPVDSGIWWVRYTWQ-GKEIRRKIGRKT--DAKNYYARVRAQILEGRYEPEKPRVV 65 Query: 59 FEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEI 118 A L E SL + +FW G + I A++ Sbjct: 66 TLGAWLGEYMETVTSVSLSQQRGYAKFWTNTLGGRPIASIKTAEL--------------- 110 Query: 119 WKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKI--P 176 +++Q ++R E ++ T +H A +K A RD +++ PV + Sbjct: 111 --ERIQVSLR--------EAGKLAPSTINRHFAFLKHTFNIALRD-GLIKENPVKGVHFF 159 Query: 177 AVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWV 236 R +L + + +L + V+ A+ TGLR+S NL W+ IDM RV V Sbjct: 160 KEPKGRTVFLSEADEAKLKESFSPEYWPYVELAIHTGLRQSEQFNLRWENIDMTSRVLTV 219 Query: 237 NPEESKSNRAIGVALNDTACKVLRDQIGKH---HKWVFVHT-KAAKRADGTSTPAVRKMR 292 SKS V LNDTA VLRD + WVF K DG + Sbjct: 220 PV--SKSGLTRHVPLNDTALAVLRDLKARQVILSPWVFPSPVDHTKPRDGNAF------- 270 Query: 293 IDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHL 352 K ++ A +AG+ +H LRHT+ S L+Q+GVPL+ +Q++ G + YAHL Sbjct: 271 --YKKVFVPAIEKAGLSGVVWHTLRHTFCSRLVQAGVPLTTVQKLAGHKDYSTTLIYAHL 328 Query: 353 APNHLTEHARKIDD 366 +P+HL E + Sbjct: 329 SPDHLHEAVGILSG 342 >UniRef50_A8UVD2 Phage integrase family protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UVD2_9AQUI Length = 361 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 94/367 (25%), Positives = 160/367 (43%), Gaps = 39/367 (10%) Query: 11 YASYSLPGGKRIKESLGTKDK---RQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRWL 67 + ++ GK + LG ++ A+ + K + ++ + L F E ++ Sbjct: 25 WFRFTYR-GKTYTKRLGRVNELPLTSAKHIAGKLRTQIIENQYLEKKEVPLFSEVAEKYF 83 Query: 68 EEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAI 127 E ++++ R+K + E + + +++ Sbjct: 84 EW------YKTERANASRRTIRETERRVKKLVEVFGDKTLDYFSEFLIDSYKQDRIKE-- 135 Query: 128 RKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKRVRWLE 187 V T + L +++AILR + + P IK V ++RVR+L Sbjct: 136 ------------GVKPSTVNRELNILRAILRKVKEWGMYSGDLPRIKTYKVDDERVRYLS 183 Query: 188 KEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAI 247 EE K LID CP+ K VVKFA TGLR S + +L W +++ V + SK+ Sbjct: 184 PEELKALIDACPDWFKPVVKFACLTGLRASELFSLTWDMVNLSEGYITVPAKYSKTKETK 243 Query: 248 GVALNDTACKVLRDQIGKHHK------WVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLS 301 + L+ A +VLR+ + + +VF + + K + + Sbjct: 244 RIPLHPKALEVLREVKARQEERWIDYGYVFTNRMGKPYS---------VEGQGYKRVFKT 294 Query: 302 ACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHA 361 AC +AGI DFRFHDLRHT+AS+L+ SGV +QE+ S M +RYAHL+P H+ + Sbjct: 295 ACEKAGIRDFRFHDLRHTFASYLVMSGVDFYTVQELMRHSSPRMTKRYAHLSPEHIRKEL 354 Query: 362 RKIDDIF 368 K+ ++F Sbjct: 355 EKVGEVF 361 >UniRef50_B7KWK2 Integrase family protein n=1 Tax=Methylobacterium chloromethanicum CM4 RepID=B7KWK2_METC4 Length = 354 Score = 224 bits (570), Expect = 5e-57, Method: Composition-based stats. Identities = 94/370 (25%), Positives = 151/370 (40%), Gaps = 45/370 (12%) Query: 2 SLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEE 61 L+RR ++W+ + G +++S T K +AQ ++ AE GD+P FEE Sbjct: 3 GLYRRGDVWWVRFR-RNGTHVRKSAKTTRKTEAQAYLERLLAE-QAGRARGDVPRHRFEE 60 Query: 62 ACLRWLEE-KADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 A R+ +E + K+L S +S F + L +I+ I V+ Sbjct: 61 AVERYFQETRVRPKTLSSYRSNSRTLAPSFNALHLDEITRRAIAEFVT------------ 108 Query: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVI----KIP 176 + V+ T + LA + I A R W WL+ PV + Sbjct: 109 --------------ARKRTGVTDTTIRRDLAFLSVICSACGR-WGWLDTNPVTTFGKRGL 153 Query: 177 AVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWV 236 R R+L + E RL+ L+ + A+ TG+R+ + L ID+ RR + Sbjct: 154 REGRPRTRFLTQAEFDRLLAAASPSLRPAITLAVETGMRREELFGLTITAIDLNRREVHL 213 Query: 237 NPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSK 296 E +K+ V L+D A ++ + + R+ D K Sbjct: 214 --ERTKTGSPRRVPLSDKAITTIKGLLDEP---------GRPRSSYLFCKGDGSRYCDMK 262 Query: 297 TSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNH 356 + ACRRA + + R+HDLRHT+ASW +Q G L L + G ++M RY HL Sbjct: 263 KGFGGACRRAKVTNMRWHDLRHTFASWYVQRGGDLYRLSRILGHSGLQMTARYGHLRVED 322 Query: 357 LTEHARKIDD 366 L E ++ Sbjct: 323 LHEEIGRVAQ 332 >UniRef50_B9JRM6 Integrase protein n=1 Tax=Agrobacterium vitis S4 RepID=B9JRM6_AGRVS Length = 343 Score = 222 bits (565), Expect = 2e-56, Method: Composition-based stats. Identities = 102/367 (27%), Positives = 158/367 (43%), Gaps = 49/367 (13%) Query: 1 MSLFRR--NEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 + L +R + WY ++ G + E+ GT DK++A+E+ +R+ E+ G T Sbjct: 3 LKLIKRHGGKNWYIRGTIR-GVSVDETTGTDDKKRAEEIRIRRETEILDRRIHGIRKTAT 61 Query: 59 FEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEI 118 F EA + +LEE + ++ +F L +I + I A ++ Sbjct: 62 FLEASVMYLEEGGASR-------FVDVVARYFGTTPLSEIDQPAIDRAARVLYPD----- 109 Query: 119 WKQKVQAAIRKGKELPVYEPKPVSTQTKAK-HLAMIKAILRAAERDWKWLEKAPVIKIPA 177 T+ + + A+L A + K + P+I+ PA Sbjct: 110 ----------------------AKASTRNRQVFTPVSAVLNFAAK--KKMCDKPIIERPA 145 Query: 178 VRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVN 237 R+RW+ EEA+ LID C LK +V F TG R S + L+W+ +D+ R V Sbjct: 146 QPKGRIRWITIEEAQSLIDACAPHLKPLVTFLFYTGARLSEALYLDWRDVDLSRS--HVA 203 Query: 238 PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKT 297 ++K+ GV L+ +L + + VF +R DG KT Sbjct: 204 FLDTKTGDDRGVPLHSGVVAMLAN-LPHREGAVF------RRHDGKPYEVKEDGGGQIKT 256 Query: 298 SWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHL 357 + ACRRAGI DF HD RHTWA+W + L L +GGW+S MV RYAH+ + L Sbjct: 257 GFKGACRRAGISDFHPHDCRHTWATWHYAANRDLITLMRLGGWKSERMVLRYAHINVDDL 316 Query: 358 TEHARKI 364 I Sbjct: 317 ASSIESI 323 >UniRef50_B6ALG3 Integrase n=1 Tax=Leptospirillum sp. Group II '5-way CG' RepID=B6ALG3_9BACT Length = 388 Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats. Identities = 88/376 (23%), Positives = 156/376 (41%), Gaps = 51/376 (13%) Query: 7 NEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLG---DLPDVTFEEAC 63 + IW+ + GKRI++ +G K QA+ ++++ K E + + F E Sbjct: 18 SGIWWVDF-WHEGKRIRKKVGP--KAQARAVYERLKTESRLGTLVPKPVRKHEPLFGELA 74 Query: 64 LRWLE-EKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQK 122 +++ K D R+++WL+ F + + + +M+ K Sbjct: 75 EQYIRYADLHHKRKGDDTPRLKWWLDAFGDKLALTLKPYMVEEVMEKMNKEGYK------ 128 Query: 123 VQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKI--PAVRN 180 T A+ L ++KA+ A ++ + +E+ P+ ++ P N Sbjct: 129 --------------------PATIARCLVVLKAVYNRAVKN-EIIERNPIARVFAPKFDN 167 Query: 181 KRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEE 240 VR+L ++ +RL + PE L +V AL TG R+ ++ L W+ +D ++ + Sbjct: 168 SLVRYLTTDQEERLFEALPERLHPIVTVALHTGCRQGELLKLVWEDVDFNAGTIFLR--D 225 Query: 241 SKSNRAIGVALNDTACKVLRDQIGKHHK--WVFVHTKAAKRADGTSTPAVRKMRIDSKTS 298 +KS + V +N +VL G+ VF T + + Sbjct: 226 TKSGDSRRVLMNSKVQEVLLALPGRDTPGAPVFTDTLGGPMEGR-----------NLRRD 274 Query: 299 WLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLT 358 + A ++AG+ FRFHDLRHT+AS L G LQ + G +S M+ RYAHL P HL Sbjct: 275 FDRAIKKAGLAPFRFHDLRHTFASRLAMMGANDRTLQTLLGHKSQRMILRYAHLGPTHLW 334 Query: 359 EHARKIDDIFGDNVPN 374 + + Sbjct: 335 NAVEGLASSAKKRIGT 350 >UniRef50_C8VWS4 Integrase family protein n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VWS4_DESAS Length = 381 Score = 221 bits (562), Expect = 5e-56, Method: Composition-based stats. Identities = 89/392 (22%), Positives = 165/392 (42%), Gaps = 43/392 (10%) Query: 2 SLFRRNEIWYASYSL-PGGKRIKE-SLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTF 59 S+ +R + + Y + GGKR ++ G K K++A+ + +R E+ + + D T Sbjct: 4 SIVKRGKTYSIVYDINQGGKRKQKWESGFKTKKEAEAILAQRINEIEKGTYINPKKD-TL 62 Query: 60 EEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIW 119 E+ +RW + S + + R E ++ L +I AK+ + K E Sbjct: 63 EDYLIRWFDTHKADLSPSTAR-RYEGIIKQHLIPSLGNIPLAKLQPLQIQEFLSKELEGG 121 Query: 120 KQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKIPA 177 +Q + + G +S + ++ L A DW+ + + P +K+P Sbjct: 122 RQDNKKTVGAG----------LSAASVNYEYRVLHKALNQAV-DWQLISRNPADLVKVPK 170 Query: 178 VRNKRVRWLEKEEAKRLIDECPEPLKSV-VKFALATGLRKSNIINLEWQQIDMQRRVAWV 236 K + L +++ RL++E + + A+ TG+R ++ W+ ID+ R + V Sbjct: 171 PEKKDMVVLSEQDIARLLNEIKDNYLYIPTFLAIYTGMRLGEVLGSTWKDIDLNRGILSV 230 Query: 237 N---------------PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRAD 281 P+ +KS R I + + T K LR+ KW V + D Sbjct: 231 RQASCQVKADDPEFKAPKTAKSKRNIDI--SQTVVKTLREHKKTQTKWKLV--AGSNWQD 286 Query: 282 GTSTPAVRKMRI----DSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEM 337 A++ R + + R G+ FH LRHT AS L+++G+ ++QE Sbjct: 287 NNLVCALQDGRPINPPSLSSYFRRVASRIGLF-VSFHALRHTHASLLLKAGIQPKIVQER 345 Query: 338 GGWESIEMVR-RYAHLAPNHLTEHARKIDDIF 368 G +I + Y+H+ P + A K+DD+ Sbjct: 346 LGHSTIAVTMDIYSHVMPGMQRQAANKLDDML 377 >UniRef50_C6MS46 Integrase family protein n=1 Tax=Geobacter sp. M18 RepID=C6MS46_9DELT Length = 356 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 95/363 (26%), Positives = 168/363 (46%), Gaps = 48/363 (13%) Query: 24 ESLGTKDKRQAQELHDKRKAELWRVE--KLGDLPDVTFEEACLRWLEEK--ADKKSLDSD 79 +S + K A++ + +A + K + T E ++++ KS D+ Sbjct: 28 QSATFERKTDAKKWAQQTEAAIREGRHFKTREAKKHTVAEMVDKYVKTVLPTKPKSKDTQ 87 Query: 80 KSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPK 139 + ++ +W + L D++ A I + K+ A KG L Sbjct: 88 EGQLLWWKDEIGLYTLADVTPAMIGEC-------------RDKLLAGKTKGGGLR----- 129 Query: 140 PVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKI--PAVRNKRVRWLEKEEAKRLIDE 197 S T +++A + A +W W+E +P+ K+ P RVR+L +E RL++ Sbjct: 130 --SPATTVRYMAALSHAFSVAVNEWGWVEDSPMRKVKKPKEPRGRVRFLTDDERNRLLEA 187 Query: 198 ----CPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALND 253 C L VV AL+TG+R S I+NL+W+ ID++R+ ++ ++K+ V + + Sbjct: 188 AKRSCNNCLYPVVLLALSTGMRFSEIMNLKWKDIDLKRKCLILH--DTKNGERRNVPVVN 245 Query: 254 TACKVLRDQ---IGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIED 310 A VL ++ + VF M + + SW +A R A +ED Sbjct: 246 LAHSVLTERSKVRRLGTELVFPSISDP------------TMPSNLRKSWAAAVRDANLED 293 Query: 311 FRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDD-IFG 369 FRFHDLRH+ AS+L +G L+ + E+ G +++ MV+RYAHL+ H + +++ IFG Sbjct: 294 FRFHDLRHSAASYLAMNGATLAEIAEVLGHKTLAMVKRYAHLSEQHTSRVVASMNEKIFG 353 Query: 370 DNV 372 + Sbjct: 354 GTL 356 >UniRef50_A1K6M5 Site-specific recombinase, phage integrase family n=1 Tax=Azoarcus sp. BH72 RepID=A1K6M5_AZOSB Length = 358 Score = 219 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 93/375 (24%), Positives = 153/375 (40%), Gaps = 45/375 (12%) Query: 5 RRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACL 64 + + L G E+ A+ + + + + G T E Sbjct: 10 KHGTTYKVQIRLKGYP--AETATFDRLSDARTWAAQTETAIKAGKHFGVAKRRTLHELAE 67 Query: 65 RWLEEKADK-KSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKV 123 ++ + AD KS ++ + + +W + F L D+S A I R+ R T Sbjct: 68 KYEQAVADSLKSFEARRGHLAYWRQAFGSSALADVSPALIAEHRDRLTKRTT-------- 119 Query: 124 QAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPA--VRNK 181 E VS T +++A + A+ A ++ +W+E PV ++ Sbjct: 120 -------------ERGTVSLATVNRYIATLSALFTFAVKELQWVEANPVERVRKFGESPG 166 Query: 182 RVRWLEKEEAKRLIDECPE----PLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVN 237 RVR+L +E L+ C E L V AL+TG R++ I L WQQ+D RR + Sbjct: 167 RVRYLSDQERAALLTACRESRNPYLYPAVVLALSTGARQAEITTLRWQQVDFARRTIVLR 226 Query: 238 PEESKSNRAIGVALNDTACKVLRDQ---IGKHHKWVFVHTKAAKRADGTSTPAVRKMRID 294 E+K+ + L A +LRD VF + + Sbjct: 227 EGETKNGAGRVLPLTGEALDLLRDLAKVRDIRDDRVFPVASTTRAFNSI----------- 275 Query: 295 SKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAP 354 K +W A +RAGI DFR+HDLRHT AS+L +G+ + ++ G ++++M RY+HL+P Sbjct: 276 -KGAWDGAVKRAGISDFRWHDLRHTAASYLTMAGIGSMEVAKVLGHKTLQMTARYSHLSP 334 Query: 355 NHLTEHARKIDDIFG 369 E + G Sbjct: 335 ERTVELGDVLTKRLG 349 >UniRef50_C6MZB6 Putative integrase n=1 Tax=Legionella drancourtii LLAP12 RepID=C6MZB6_9GAMM Length = 386 Score = 216 bits (551), Expect = 9e-55, Method: Composition-based stats. Identities = 93/386 (24%), Positives = 166/386 (43%), Gaps = 66/386 (17%) Query: 2 SLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEE 61 LF+R ++W+ + G RI+ES GTK ++A++ +R E+ + G P +F+E Sbjct: 8 GLFKRGQVWHIEKQVL-GHRIRESTGTKSLQEAEQYLARRCEEIRQATIYGVRPKRSFKE 66 Query: 62 ACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQ 121 A +R+L E K S+D+D ++ + L ++H + K Sbjct: 67 AAVRFLNENQHKASIDTDAILLKSICPFIGDLTL------------EQVHIGTLQSFIKA 114 Query: 122 KVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWK------WLEKAPVIKI 175 K +A ++ T++ L +++ IL A +W WL AP IK+ Sbjct: 115 KQEAKLK--------------TKSINNTLELVRHILNVAATEWIDENSLTWLLVAPKIKL 160 Query: 176 PAVRNKRVRW-LEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRV- 233 V++ R + L E R ++ P L + +F + TG R+ + L W+ ++RV Sbjct: 161 LPVKDARAPFPLSWSEQSRFLEALPVHLNQMARFKVNTGCREQEVCQLRWE---WEKRVP 217 Query: 234 -----AWVNPEE----------SKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAK 278 ++ P K+ V LND A V+ + G H ++VF + Sbjct: 218 SLNTSVFIIPSHINRDGELRQLVKNGEDRLVILNDEAKAVIEEVRGIHSEFVFSYNG--- 274 Query: 279 RADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMG 338 + + + T+W +A ++A + D R HDL+HT+ L +GV Q++ Sbjct: 275 ----------KPITRMNNTAWRNARKKANLSDLRVHDLKHTFGRRLRAAGVSYEDRQDLL 324 Query: 339 GWESIEMVRRYAHLAPNHLTEHARKI 364 G S + Y+ ++L E A I Sbjct: 325 GHRSGRITTHYSQAELSNLLEAANLI 350 >UniRef50_A4NZB4 Prophage integrase n=1 Tax=Haemophilus influenzae 22.4-21 RepID=A4NZB4_HAEIN Length = 300 Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats. Identities = 106/328 (32%), Positives = 162/328 (49%), Gaps = 39/328 (11%) Query: 1 MSLFRRN-EIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTF 59 MS+ + +W + P G+RI+ S T +KR AQE HDK K ELW+VEKL P+ T Sbjct: 1 MSIRKNKYGVWEIDIATPSGERIRCSAKTTEKRLAQEYHDKLKHELWQVEKLNKKPERTI 60 Query: 60 EEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIW 119 E A +R+LE +K + +E+W E G L ++ I +A+ H TKE Sbjct: 61 EGALIRFLEVSQGQKDFATKIRHVEYWREVLAGRLLSSLTTDDILNALP-THKTGTKE-- 117 Query: 120 KQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVR 179 P+S T+ ++ + I L A++ W++ P I Sbjct: 118 --------------------PISPSTQNRYRSSIMRALSIAQQS-GWIDNIPYIPRNKEP 156 Query: 180 NKRVRWLEKEEAKRLIDECP-EPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNP 238 RVRW+ + +A+ LI+ + +K V FALATG R S I+ L W +ID ++++A V+ Sbjct: 157 KVRVRWISQVKAQGLINALQLDWMKDVCAFALATGARASEILTLTWDKIDFEKQIAIVSS 216 Query: 239 EESKSNRAIGVALNDTACKVLRDQIG-KHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKT 297 + +KS RA + L A VL+ + + +VF K +++ K Sbjct: 217 DIAKSGRARSLLLGTEAMDVLKRRASLRMSPYVFHRGKG------------KRISEVDKY 264 Query: 298 SWLSACRRAGIEDFRFHDLRHTWASWLI 325 + A +R IE+FRFHDLRHTWASW + Sbjct: 265 DFNRALKRCKIENFRFHDLRHTWASWHV 292 >UniRef50_Q1IPY0 Phage integrase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IPY0_ACIBL Length = 359 Score = 213 bits (543), Expect = 7e-54, Method: Composition-based stats. Identities = 105/385 (27%), Positives = 177/385 (45%), Gaps = 59/385 (15%) Query: 2 SLFRRN---EIWYASYSLPGGKRIKESL-GTKDKRQAQEL--HDKRKAELWRVEKLGDLP 55 +++R ++AS++ GKR + L G QA+EL + + E +V + Sbjct: 11 GVYQRKDRPGQFWASWTDQNGKRRQRRLRGVFTLTQAKELLAAAQLRVERIKVLGFAEPT 70 Query: 56 DVTFEEACLRWL---EEKADKKSLDSDKSRIEFWL-EHFEGIRLKDISEAKIYSAVSRMH 111 FE+ R+L + K + ++ +E L ++F ++L I I + V++ Sbjct: 71 KERFEKIEARFLLHQRARLTKAGYERERGVVETHLHDYFGQMQLALIRRGDIANFVTK-- 128 Query: 112 NRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAP 171 VS T AK L +K + R +W+ L P Sbjct: 129 -------------------------RAAEVSPATVAKELVTLKHLFRLCV-EWELLVLNP 162 Query: 172 V--IKIPAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDM 229 +K P V RVRWL+ EE + L+ CP+ L+ + A ATG+R+S ++ + W +D Sbjct: 163 ATGVKAPKVAPGRVRWLQPEELRALLQACPDWLRPIAGLAAATGMRRSEVLGVRWFDVDR 222 Query: 230 QRRVAWVNPEESKSNRAIGVALNDTACKVLRD-QIGKHHKWVFVHTKAAKRADGTSTPAV 288 + + ++K+N + V LN +A V+ + GK + +F + + G Sbjct: 223 RNGCLTLR--QTKNNESRIVFLNQSALHVIDSLRKGKSSEKLFPKVTPEQVSMG------ 274 Query: 289 RKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRR 348 +L CR GIEDFR+HDLRH +AS L QSG L + E+ G + + M +R Sbjct: 275 ----------FLRTCRELGIEDFRWHDLRHCFASLLRQSGADLQDVAELLGHKDLRMTKR 324 Query: 349 YAHLAPNHLTEHARKIDDIFGDNVP 373 Y+HL+P HL+ AR+ D + G+ + Sbjct: 325 YSHLSPAHLSAAARRFDAVLGEPLS 349 >UniRef50_A5EQT5 Putative prophage integrase n=1 Tax=Bradyrhizobium sp. BTAi1 RepID=A5EQT5_BRASB Length = 386 Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats. Identities = 96/395 (24%), Positives = 155/395 (39%), Gaps = 65/395 (16%) Query: 1 MSLFRR--NEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 + L++R + WY ++ G + E+ T + A+E+ KR+ E+ + G T Sbjct: 3 LKLYQRPNSPNWYIRGTVK-GVYVHETCETDVRAVAEEIRAKREWEILQSVVHGIKAGGT 61 Query: 59 FEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEI 118 FE A + +LE + + L ++HF L I + A R++ Sbjct: 62 FEAAAVIYLENGGEARFLQP-------LIDHFGITPLDKIDQTVADDAAKRIYP------ 108 Query: 119 WKQKVQAAIRKGKELPVYEPKPVSTQTKAKHL-AMIKAILRAAERDW-KWLEKAPVIKIP 176 ++ T + + A++ A + K K P Sbjct: 109 ---------------------GLAPATLDRQFYTPLSAVINKAHQHGPKGFCSPVKFKRP 147 Query: 177 AVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWV 236 RVRW+ EA +LI+ C L+ +V F TG R + L+W+ +D+QR V Sbjct: 148 KKPKGRVRWITHAEAHKLIEACAPHLRPLVAFLFYTGARCGEALWLDWRNVDLQRGE--V 205 Query: 237 NPEESKSNRAIGVALNDTACKVL-----------RDQIGKHHKWVFVHTKAAKRADGTST 285 ++K+ R GV L+ +L R K KW+ + + + + Sbjct: 206 QFLDTKNGRDRGVPLHPDIVAILANLPHREGEVFRKPGHKITKWLPSGSNSGELIETVEY 265 Query: 286 PAVRKMRI-------------DSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLS 332 K + +AC RAGI DF HD RHTWA+W + L+ Sbjct: 266 TLGEPYAPLDPDDERDVSAGSRIKKGFKAACDRAGITDFHPHDCRHTWATWHYRQNRDLN 325 Query: 333 VLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDI 367 L+E+GGW S+EMV RYAHL + I Sbjct: 326 RLKELGGWSSLEMVLRYAHLNVEDAAPSIHNMPSI 360 >UniRef50_Q5X3B3 Putative uncharacterized protein n=2 Tax=Gammaproteobacteria RepID=Q5X3B3_LEGPA Length = 353 Score = 211 bits (536), Expect = 5e-53, Method: Composition-based stats. Identities = 93/377 (24%), Positives = 166/377 (44%), Gaps = 46/377 (12%) Query: 5 RRNEI-WYASYSLPGGKRIKESLG--TKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEE 61 + +I + L G + T ++ Q+ + R K + T E Sbjct: 10 KEGKISYRVKIRLKGFPTQHATFERLTDARKWVQQTESAIRE--GRHFKTTEAKRRTLGE 67 Query: 62 ACLRWLEEKADKKS--LDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIW 119 R++++ +K L + + +W E L ++S A I ++ T Sbjct: 68 MIDRYIKDVIQEKPKNLKNRVLHLNWWKEELGQYSLAELSPAMIAEKRDKLSAGITSRNL 127 Query: 120 KQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKI--PA 177 K+ S T +++A + A ++W WLE +P+ ++ P Sbjct: 128 KR--------------------SPSTVVRYMASLSHAFTIAVKEWGWLEDSPMRRVTKPK 167 Query: 178 VRNKRVRWLEKEEAKRLIDECP----EPLKSVVKFALATGLRKSNIINLEWQQIDMQRRV 233 RVR+L +E RL+ EC + L V AL+TG RK I+ L W+ +D R + Sbjct: 168 EPRGRVRFLSDDERARLLSECKKSDSQYLYLAVVLALSTGGRKMEILGLSWKNVDFNRSI 227 Query: 234 AWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRI 293 ++ E+K+ + L A +++ H +D K I Sbjct: 228 ITLH--ETKNGERRVLPLTGHALDLMKQHAKVRH----------VNSDLVFPGKDFKTPI 275 Query: 294 DSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLA 353 D +T + +A +RAGI DFR+HDLRH+ AS+L +G L+ + E+ G ++++MV+RYAHL+ Sbjct: 276 DLRTPFETALKRAGITDFRWHDLRHSCASYLAMNGASLAEIAEILGHKTLQMVKRYAHLS 335 Query: 354 PNHLTEHARKIDD-IFG 369 H ++ ++++ IFG Sbjct: 336 EAHTSKVVARMNEKIFG 352 >UniRef50_B2KEQ8 Integrase family protein n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KEQ8_ELUMP Length = 337 Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats. Identities = 84/375 (22%), Positives = 146/375 (38%), Gaps = 54/375 (14%) Query: 1 MSLFR-RNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGD--LPDV 57 M +F N W Y KR K + ++ A ++ K ++ + D DV Sbjct: 1 MGVFETENGTWGIDYRYKS-KRYKRVVAIT-RKLALDIERKILTDIKEGKFFPDLDKQDV 58 Query: 58 TFEEACLRWLEEKADK-KSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTK 116 TF E R+ K + + K + L F +++ DI+ I + R Sbjct: 59 TFAEIAERYWSLHGRKTRGAQTFKYTFDIILSRFGHMKVADITTEDIQKFYNDTWERT-- 116 Query: 117 EIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIP 176 S T +H ++ +AI+ A + + P I + Sbjct: 117 -------------------------SPSTANRHFSLFRAIINKALNLKLYKGQNPCIGVV 151 Query: 177 AVRN--KRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVA 234 R+ R ++ KE+ K L+ LK ++ FA+ TG RK I+NL W+ +D + Sbjct: 152 RQRDNPPRDKYFTKEDIKSLLVTAENRLKPIIAFAVLTGCRKMEILNLRWKDVDFYGGII 211 Query: 235 WVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRID 294 + SKS + + L + +L VF T A Sbjct: 212 RI--TMSKSGKPREIPLANDLRPILLAMHTNPQDKVFNITVPA----------------- 252 Query: 295 SKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAP 354 K S+ ++ G E + FH RHT+AS +Q+ ++ LQ + G +IE+ RY+H +P Sbjct: 253 LKYSFNKLLKKLGFEGYCFHTCRHTFASLYMQNDGNITDLQRILGHATIELTMRYSHFSP 312 Query: 355 NHLTEHARKIDDIFG 369 ++ + + +D I Sbjct: 313 QYIQQTIKVMDGIIA 327 >UniRef50_C6NU13 Site-specific recombinase, phage integrase family n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NU13_9GAMM Length = 390 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 90/401 (22%), Positives = 163/401 (40%), Gaps = 57/401 (14%) Query: 2 SLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAEL-----WRVEKLGDLPD 56 S+F+ + W A G + S KR+A + + +A L +V K ++ + Sbjct: 3 SVFQSGKFWRAQVRRRGYPSL--SATFDTKREALQWAAQVEARLETQTPAQVYKKVEVRE 60 Query: 57 VTFEEACLRWLEE---KADKKSLDSDKSRIEFW-LEHFEGIRLKDISEAKIYSAVSRMHN 112 +T + A R+ E ++ + S I++W ++ + L ++ ++ A+ M Sbjct: 61 LTLKAAFERYTREILPSKAPRTSRREHSLIQWWSRSLWQAVPLPNLDGPQVAQAIRAMEK 120 Query: 113 RKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLE-KAP 171 S T LA++ + A ++W +++ P Sbjct: 121 ENR--------------------------SANTIRLMLAVLSHLYTIARKEWGYVDLINP 154 Query: 172 V--IKIPAVRNKRVRWLEKEEAKRLIDEC---PEPLKSVVKFALATGLRKSNIINLEWQQ 226 V ++ P + R R E RL++ C L +V AL T +R+ + L W + Sbjct: 155 VELVRKPRLPEGRDRRFVGNEEDRLLEACARKNPELADLVIVALETAMRQGEVFTLTWDR 214 Query: 227 IDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTP 286 I + PE +K+ + V L++ A L+ Q +H+ R +T Sbjct: 215 ISFTDHTIKLPPELTKTRKGRTVPLSERAEDALKRQRARHNGH-------GNRVWSYAT- 266 Query: 287 AVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMV 346 + + S+ A + AG+EDF FHDLRH S + G+ +V+Q + G ++ +M+ Sbjct: 267 -----QDGVRASFFKAVKVAGLEDFHFHDLRHEATSRFFERGLNAAVVQGITGHKTAQML 321 Query: 347 RRYAHLAPNHLTEHARKIDDIFG-DNVPNMSHSEIMEDIKK 386 RY HL+ L E R D G P S S I++ Sbjct: 322 ARYTHLSGKSLVEAVRGADPAIGVSTTPKPSPSPSGVQIQR 362 >UniRef50_A4A4J3 Integrase n=3 Tax=Gammaproteobacteria RepID=A4A4J3_9GAMM Length = 377 Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 82/388 (21%), Positives = 159/388 (40%), Gaps = 52/388 (13%) Query: 2 SLFRRN--EIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTF 59 L++R IW+ + G R+ ES GT + +A+ +R E+ + G + +F Sbjct: 7 GLYKRGTQGIWHIDKCVRGYGRLHESTGTSELEEAERYLIRRLEEMRKANVYGIRVERSF 66 Query: 60 EEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIW 119 +A ++L + K+S+ ++ H + L+ R+H + Sbjct: 67 RQAATKFLLDYQHKRSIGRYAQSLKILDPHVGDLPLR------------RVHQGTLESFI 114 Query: 120 KQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWK------WLEKAPVI 173 + + + +R T + LA+++ IL A R W+ WLE AP++ Sbjct: 115 RHRRKQGMR--------------ANTINRDLAVVRRILTLAARLWRDDSGLTWLETAPLL 160 Query: 174 KIPAVRNKRVRW-LEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQ----ID 228 ++ + R + L +E RL PE L+ + F + TG R+ ++ L W + Sbjct: 161 QLLDCDDARKPYPLSWDEQARLFARLPEHLREMALFKVNTGTREQEVVCLRWDWEVSIPE 220 Query: 229 MQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAV 288 ++ V V K+ V +N A V+ Q G++ ++VF ++K Sbjct: 221 LKTSVFVVPGGGVKNGEDRLVVMNAEARAVINRQRGRNPEYVFTYSKG------------ 268 Query: 289 RKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRR 348 + + + +W A G+ R HDL+HT+ L GV Q + G ++ ++ Sbjct: 269 QPVDRINTKAWRRAREEVGLPQARVHDLKHTFGRRLRAKGVSHETRQVLLGHKNGQITTH 328 Query: 349 YAHLAPNHLTEHARKIDDIFGDNVPNMS 376 Y+ L + K+ G + P ++ Sbjct: 329 YSAAEIGELIDAVEKV-SWSGSSAPTLT 355 >UniRef50_C6HW36 Putative phage integrase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HW36_9BACT Length = 367 Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats. Identities = 87/368 (23%), Positives = 156/368 (42%), Gaps = 49/368 (13%) Query: 7 NEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRW 66 + +W+ GKRI+ +G K A+ ++++ K E + F Sbjct: 18 SGVWWVDLR-HEGKRIRRKVGPKT--AAKAVYERLKTEAREGRLVPREKKRIFP-TVREV 73 Query: 67 LEEKADK---KSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKV 123 + E+A + + ++K +W+E R D++ + + ++ Sbjct: 74 VTERASRFSGRQGVNEKRYASWWIEKIGEKRTNDLTPSDLRKILN--------------- 118 Query: 124 QAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKIPAVRNK 181 + + +S QT ++A L A RD K ++ +P+ + Sbjct: 119 ----------EARDSRDLSPQTINHFFGHLRAALNEALRDGK-IDHSPMQGFSLLPTPRG 167 Query: 182 RVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEES 241 R+R+L + E RL + +V+FA+ TGLR+ +L W ID+Q RV + S Sbjct: 168 RLRFLTEGEELRLREVMTPADFRLVRFAILTGLRREEQFSLTWSDIDLQNRVLTI--PRS 225 Query: 242 KSNRAIGVALNDTACKVLRDQIGKH---HKWVFVHTKAAKRADGTSTPAVRKMRIDSKTS 298 K V L+D A ++L+ + W F A D + + Sbjct: 226 KHGGTRHVPLSDEAVEILKAIRTERRVVSAWCFPSQNPATHIDPQNF---------YRRV 276 Query: 299 WLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLT 358 +L A +AGI+D +H LRHT AS L+ +GV + +QE+ G +++ M RY+HL+ HLT Sbjct: 277 YLPALEKAGIKDVIWHTLRHTCASRLVMAGVDIRTVQEILGHKTLAMTTRYSHLSGAHLT 336 Query: 359 EHARKIDD 366 + +I Sbjct: 337 QAVNRISK 344 >UniRef50_A8ZUN3 Integrase family protein n=2 Tax=Desulfobacteraceae RepID=A8ZUN3_DESOH Length = 397 Score = 200 bits (508), Expect = 8e-50, Method: Composition-based stats. Identities = 84/376 (22%), Positives = 153/376 (40%), Gaps = 53/376 (14%) Query: 6 RNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRV------EKLGDLPDVTF 59 RN+ + + GGK+ ++ + A+E+ K K ++ R +K D + Sbjct: 47 RNKTYKVTVK-HGGKK--KTKLVDNLDLAREIETKLKHDITRGTFHLQTQKQAPTLDAFW 103 Query: 60 EEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIW 119 ++ L W+ ++KKS D + L ++ ++ I Sbjct: 104 DKDYLPWIR--SNKKSWYEDAINYQTHL-------------------APKLGQKRLDAIT 142 Query: 120 KQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKIPA 177 + ++ + ++ KP + T + ++ + A R K+ P I P Sbjct: 143 QLDIERLLSGLRKGTSKRGKPYAAATIKHQIVLLTRMFNVAARWGKYTGPNPCKLIAKPR 202 Query: 178 VRNKRVRWLEKEEAKRLIDECPEP----LKSVVKFALATGLRKSNIINLEWQQIDMQRRV 233 + N++ +L +E RL+D + + F L TGLR+ + L WQ ++M R+ Sbjct: 203 LNNQKTGFLTDDELTRLLDVLEQWPDRMSAGFIAFLLHTGLRRGELFRLTWQDVNMDRQT 262 Query: 234 AWVNPEESKSNRAIGVALNDTACKVLRDQIGKHH-KWVFVHTKAAKRADGTSTPAVRKMR 292 V + K R + L++ A L +H +VF A+RAD Sbjct: 263 LTVR--DPKGGRDTVLPLSEKAIDALNSLPREHETPFVFYGRNGAQRAD----------- 309 Query: 293 IDSKTSWLSACRRAGIE-DFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAH 351 + W + A + FR HDLRH +AS L+ +G L +Q + +S M +RYAH Sbjct: 310 --FRHPWYRIKQAAALPEGFRLHDLRHHFASALVSAGTNLYTVQALLTHKSAAMTQRYAH 367 Query: 352 LAPNHLTEHARKIDDI 367 L+ L + + DD+ Sbjct: 368 LSDQALRDAVKLSDDL 383 >UniRef50_C0GWH6 Integrase family protein n=3 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GWH6_9DELT Length = 394 Score = 200 bits (508), Expect = 9e-50, Method: Composition-based stats. Identities = 84/374 (22%), Positives = 152/374 (40%), Gaps = 45/374 (12%) Query: 11 YASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRWL--- 67 Y +PG S G Q DK + ++ + +T EEA + Sbjct: 25 YFDSDVPGFIMEVRSTGKSTYY--QRYRDKFGR--LKQARIAPVDSITLEEARQKAKQIR 80 Query: 68 -----------EEKADKKSLDSDKSRIEFWLEHF--EGIRLKDISEAKIYSAVSRMHNRK 114 E + ++ + + + ++ + S+ + N K Sbjct: 81 SQTTMGFDPRDEAEKNRNTPTFKEFIRDQYIPYIQVHKRSWDQDSKMLELRVLPLWGNMK 140 Query: 115 TKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIK 174 EI + VQ + + T +++A++K I AE+ W +EK P Sbjct: 141 MSEITRDDVQ------QFQSNFLRAGCKPGTVNRYMALVKYIFNLAEK-WDVIEKTPARH 193 Query: 175 IPAVRNK--RVRWLEKEEAKRLIDECPEP----LKSVVKFALATGLRKSNIINLEWQQID 228 I + + + R+L EE KRL+ E + +++ + TG RKS ++NL WQ++D Sbjct: 194 ISRLEDNNCKERYLSSEETKRLLGELKNCKSQVVPDIIELLILTGARKSEVVNLPWQELD 253 Query: 229 MQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAV 288 +++ + + PE +K+ + L+ A ++L + ++VF + K Sbjct: 254 LKQGLWTIPPERNKAKTRKTIPLSQGALRILEKRKHNGSEYVFPNPKTGGPIKH------ 307 Query: 289 RKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRR 348 +W + AGI D R HDLRH +AS L+ SG L +Q++ G +I +R Sbjct: 308 ------FHNTWDRVRKNAGIPDVRIHDLRHNFASLLVNSGRSLYEVQKLLGHSNISTTQR 361 Query: 349 YAHLAPNHLTEHAR 362 YAHL + L + Sbjct: 362 YAHLTQDTLRDATE 375 >UniRef50_A3T0W5 Site-specific integrase/recombinase-like n=3 Tax=Rhodobacteraceae RepID=A3T0W5_9RHOB Length = 353 Score = 200 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 93/388 (23%), Positives = 160/388 (41%), Gaps = 54/388 (13%) Query: 5 RRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACL 64 ++ ++ + GG R + S GT+D A+ + +A R G D T EA Sbjct: 6 KKTRVYQYDI-VVGGHRFRGSCGTEDFEAAKAVEADIRANAKRNAARG--SDYTLSEALG 62 Query: 65 RWLEEK-ADKKSLDSDKSRIEFWLEHFEGI-RLKDISEAKIYSAVSRMHNRKTKEIWKQK 122 ++ +K A + S + KS+ L + +G R+ +++A I ++ Sbjct: 63 TYINDKIAGRPSEGTTKSQARVILSYMDGKKRISKLTDADITQYAAK------------- 109 Query: 123 VQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIP----AV 178 + T +HL M+ LR + +K + P I + Sbjct: 110 --------------HRATCANSTVNRHLQMLGRALRHMGKIYK--TEIPDIDLKAAETKE 153 Query: 179 RNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNP 238 +RVR L +E RL P+ +V FAL TG R S I L W+ +DM R Sbjct: 154 PRERVRELTTDEQTRLFAALPQEFHPIVAFALMTGARISTITGLLWRDVDMPNREISFRL 213 Query: 239 EESKSNRAIGVALNDTACKVL----RDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRID 294 K + + +N +L + + + ++VF R DG S ++ + Sbjct: 214 ---KGDELMIFPINGELAALLSALPKSNVMESRRYVFT------RVDGHSAERIQIVASG 264 Query: 295 --SKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHL 352 T W A AG+E+FRFHDLRHT+A+ +++ +S++ ++ G +IE RYAH+ Sbjct: 265 GVFGTVWRKALLDAGVENFRFHDLRHTFATRMLRKTQNISLVSKLLGHTNIETTSRYAHV 324 Query: 353 APNHLTEHARKIDDIFGDNVPNMSHSEI 380 + L + I G + + I Sbjct: 325 LTSDLRNALDRF-SITGSGPSTLQPNNI 351 >UniRef50_D1RC05 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1RC05_9CHLA Length = 369 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 81/360 (22%), Positives = 146/360 (40%), Gaps = 55/360 (15%) Query: 21 RIKESLGTKDK-------RQAQELHDKRKAELWRVEKLGDL--PDVTFEEACLRW--LEE 69 +I+ES G K ++A++ + KA + DL T + R+ + Sbjct: 22 QIRESDGFPPKSKTFPTLQEAKDWQKQEKARRRQGYGSSDLMTGKKTLIDLIDRYETIIL 81 Query: 70 KADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRK 129 K + K +++W L IS I + T + K+ Sbjct: 82 PTKPKDARNMKRHLDWWRNKIGKYGLTKISSDLIAQCRQELAEGVTSKKTKR-------- 133 Query: 130 GKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPA--VRNKRVRWLE 187 S T ++LA + + + W+ P ++ R R + Sbjct: 134 ------------SHATVNRYLATLSTVFTYGINECGWITDNPCRRVSKFTESKGRDRIVA 181 Query: 188 KEEAKRLIDEC----PEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKS 243 + E RL +EC E L VV A+ TG+R+ I+ L W I++ R+ + +E+K+ Sbjct: 182 ENEFTRLFEECKNSRNEHLLPVVVLAVTTGMRRGEILGLTWDCINLDRQTIIL--KETKN 239 Query: 244 NRAIGVALNDTACKVLRDQIGKHHK---WVFVHTKAAKRADGTSTPAVRKMRIDSKTSWL 300 + V++ A ++LR K + +VF K R +I + +W Sbjct: 240 GKQRTVSIVGEALELLRSHYQKRNPNTPYVFPAKK-------------RFGKICIRKAWD 286 Query: 301 SACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEH 360 A +RAGI++ R HDLRHT+ ++ ++G + L G ++++MV RY H+ +T Sbjct: 287 EALKRAGIQNLRIHDLRHTFCTYASETGASILELAAAMGHQTLQMVNRYTHMNQKKITHQ 346 >UniRef50_Q1NPW4 Phage integrase n=5 Tax=Deltaproteobacteria RepID=Q1NPW4_9DELT Length = 465 Score = 198 bits (503), Expect = 3e-49, Method: Composition-based stats. Identities = 92/377 (24%), Positives = 155/377 (41%), Gaps = 61/377 (16%) Query: 7 NEIWYASYSLPGGK-RIKESLGTKD--KRQAQELHDKRKA-----ELWRVEKLGDLPDVT 58 + ++ Y GK R + G D +AQ + ++ E E+ T Sbjct: 128 GKTYHLRYRDGHGKLRQHKIGGADDISFDKAQAAATRLRSRVVLGEDPLAERQTKKQVPT 187 Query: 59 FEE-ACLRWLEE-KADKKSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMHNRKT 115 EE A +++ K K+S SD ++ L F L I +A++ M Sbjct: 188 LEEFAAEKYMPYVKGYKRSWKSDFGYLKNHLLPLFGNQHLDQIKQAEVIELHHGM----- 242 Query: 116 KEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKW--LEKAPV- 172 + + + T + + +++ I A + WK + P Sbjct: 243 ---------------------KARGYALATCNRQVILLRYIFNLARK-WKIPGADNNPTT 280 Query: 173 -IKIPAVRNKRVRWLEKEEAKRLIDECPE----PLKSVVKFALATGLRKSNIINLEWQQI 227 + + N R R+L ++EA RL LK +V L G RKS ++N W+ Sbjct: 281 GVALFEANNGRERYLTEDEAARLKAALESSENTQLKYIVSLLLLLGCRKSELLNSRWEDF 340 Query: 228 DMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPA 287 D+ RR + SKS +A V L+ A +VL I + +V + K T P Sbjct: 341 DLARRSWRIPL--SKSGKARYVPLSTAALEVLAS-IPRLSPYVVPNPK-------TLQPF 390 Query: 288 VRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVR 347 V R SW +A ++AG+ D R HDLRH++AS+L+ SG + + ++ G ++ + Sbjct: 391 VSVFR-----SWDTARKKAGLPDVRMHDLRHSFASFLVNSGRSIYEVSQLLGHSQLKTTQ 445 Query: 348 RYAHLAPNHLTEHARKI 364 RY+HL+ + L I Sbjct: 446 RYSHLSNDTLLAAVDSI 462 >UniRef50_A6G3J3 Site-specific recombinase, phage integrase family protein n=3 Tax=Plesiocystis pacifica SIR-1 RepID=A6G3J3_9DELT Length = 363 Score = 197 bits (501), Expect = 6e-49, Method: Composition-based stats. Identities = 88/379 (23%), Positives = 142/379 (37%), Gaps = 58/379 (15%) Query: 11 YASYSLPGGKR--IKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPD---VTFEEACLR 65 + ++ P G+R +++ + +R A+ + + L + TF Sbjct: 3 HIEFTHPNGRRQTVRKVSPVQTRRGAEAYERQLRNALLTGTYDKEAQADQAPTFRVFARE 62 Query: 66 WLEEKA---DKKSLDSDKSRIE--FWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 + +K S K R+ + F +RL I I Sbjct: 63 FQTNYVATNNKPSTQRSKERVLRLHLIPFFGYMRLDAIGPRHIERY-------------- 108 Query: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRN 180 + K S +T HL +++ +L A R+W ++K P I+ Sbjct: 109 -------------KATKLKDYSRKTLNNHLTILRKLLETA-REWGLIDKVPSIRWLKAAK 154 Query: 181 KRVRWLEKEEAKRLIDE--CPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNP 238 RWL+ EA+RL++ C + ++ L TGLR+ ++ L WQ + + R V Sbjct: 155 PEFRWLDFAEAERLLEASRCEPEWRMMILLGLRTGLRQGELLALRWQDVCFEARRIAVRQ 214 Query: 239 -------EESKSNRAIGVALNDTACKVLRDQIGK----HHKWVFVHTKAAKRADGTSTPA 287 KS RA V L+ + WVF + + Sbjct: 215 AVAEGILGTPKSGRAREVPLSPATLAEFVRHQARYRHLRSPWVFCQLDGDHAGEMLTKGM 274 Query: 288 VRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVR 347 K A RA +E +HDLRH++AS L GVPL +QE+ G +IEM Sbjct: 275 -------CKWPLRRARDRADLEALGWHDLRHSFASHLAMRGVPLKAIQELLGHSTIEMTM 327 Query: 348 RYAHLAPNHLTEHARKIDD 366 RYAHLAP+ L + +D Sbjct: 328 RYAHLAPSTLIDAVAALDP 346 >UniRef50_C8VWK7 Integrase family protein n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VWK7_DESAS Length = 389 Score = 197 bits (500), Expect = 6e-49, Method: Composition-based stats. Identities = 89/393 (22%), Positives = 160/393 (40%), Gaps = 49/393 (12%) Query: 6 RNEIWYA----SYSLPGGKRI--KESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTF 59 R + + + P GKRI ++ + +R+A++L D AE+ + + + +TF Sbjct: 8 RGKNKWRLNVPDGTGPDGKRITHRKVVEATSEREAKKLLDVFSAEVQKGQYIAP-SKLTF 66 Query: 60 EEACLRWLEEKAD--KKSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMHNRKTK 116 +E +WLE K D K+L K + L ++++DI I + + Sbjct: 67 KEFSQKWLESKKDLAPKTLYRYKEILNSRILPAMGHLKIEDIKPFHIMQFYGNLQEPGIR 126 Query: 117 EIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKI- 175 E K+ +S T H ++ I AA + W+ + P +++ Sbjct: 127 EDGKE-----------------GTLSPATVLYHHRLLTNIFNAAVK-WQIILTNPALRVE 168 Query: 176 -PAVRNKRVRWLEKEEAKRLIDECPEP---LKSVVKFALATGLRKSNIINLEWQQIDMQR 231 P + + E+E+ L+ E +++V AL GLR+ I+ LEW+ ID+ + Sbjct: 169 APKAKKHKATSYEEEDTAALLSALEEQPLKFQAIVYIALGCGLRRGEIMGLEWKDIDLTK 228 Query: 232 RVAWVNPEE---------SKSNR----AIGVALNDTACKVLRDQIGKHHKWVFVHTKAAK 278 V +KS + +A+ +L+ + ++ + Sbjct: 229 GTLEVRQSSQYLPGHGTFAKSPKNESSERIIAVPTETMSLLKQHRVQQNEQRLQVGGLWQ 288 Query: 279 RADGTSTP-AVRKMRIDSKTSWLS-ACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQE 336 +D T + M DS T W S + + FH LRHT AS++I++G+PL + Sbjct: 289 ASDRLFTTWDGKPMHPDSITKWFSGFLKNNNLSPLPFHGLRHTAASYMIKAGIPLKNIAS 348 Query: 337 MGGWESIEMV-RRYAHLAPNHLTEHARKIDDIF 368 G S YAH + E A K++DI Sbjct: 349 RLGHSSPNTTLNIYAHSFKSVDAEAANKMNDIL 381 >UniRef50_B8J3W5 Putative uncharacterized protein n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8J3W5_DESDA Length = 337 Score = 197 bits (500), Expect = 6e-49, Method: Composition-based stats. Identities = 78/381 (20%), Positives = 162/381 (42%), Gaps = 52/381 (13%) Query: 2 SLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRV--EKLGDLPDVTF 59 S+ +R ++ + + G + K A++ + E+ R + + T Sbjct: 3 SIRKRGDLQWEARIRRKGWPVTCKT-FNTKSDAEKWARDIENEMDRGVFTSRTEAENTTL 61 Query: 60 EEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIW 119 EA R++ E ++ + +L+ I + ++ + I Sbjct: 62 NEALERFIAE----------------YVPRYNNPKLETIKARALQR--RKIATKFMAAIR 103 Query: 120 KQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLE-KAPVIKIPAV 178 + + +++ + V+ T LA+I + A W + PV +IP Sbjct: 104 SKDIADFMQER------AAEGVAGNTIRLDLALISRVFNVAISSWGMESLRNPVSRIPKP 157 Query: 179 R--NKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWV 236 + + R R LE +E +RL+ C + L+ +V+FA+ T +R+ + +L WQ ID+++ A++ Sbjct: 158 KVSSGRTRRLEGDEEERLLAACSDSLRPIVRFAIETAMRRGEMASLTWQNIDLEKSTAYL 217 Query: 237 NPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSK 296 ++K+N V L+ A ++L++ VF + + Sbjct: 218 --PKTKNNEERTVPLSPAAVQILKNLEKGESARVF-----------------QLSDVSIT 258 Query: 297 TSWLSACRRAGIEDFRFHDLRHTWASWLIQSG-VPLSVLQEMGGWESIEMVRRYAHLAPN 355 +++ C++ GIE FHDLRH S L + + + ++ + G ++++M+ RY+HL Sbjct: 259 QAFIKTCQKVGIEGLTFHDLRHEATSRLFERTDLDIMEIKSITGHKTLQMLARYSHLRTY 318 Query: 356 HLTEHARKIDDIFGDNVPNMS 376 L + R G+ PN+S Sbjct: 319 KLVD--RLAGARRGETPPNLS 337 >UniRef50_Q0VMT6 Rci protein n=22 Tax=Proteobacteria RepID=Q0VMT6_ALCBS Length = 367 Score = 197 bits (500), Expect = 6e-49, Method: Composition-based stats. Identities = 91/372 (24%), Positives = 153/372 (41%), Gaps = 33/372 (8%) Query: 7 NEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLP--DVTFEEACL 64 + W A G ++ T KR A++ + + E+ R + P +T +A Sbjct: 9 SGTWKAVIRKTGFPTTSKTFRT--KRDAEDWSRRTEDEMVRGVYIQRAPAERMTVADALK 66 Query: 65 RWLEEKADKKSLDS---DKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQ 121 R+L E + K S D + ++ L +S I ++ Sbjct: 67 RYLAEVSPTKRPASAACDVRHSKPLIKGLGKYSLAALSPEIIAK-------------YRD 113 Query: 122 KVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKW-LEKAPV--IKIPAV 178 + A + + +P+P S T LA++ + A R+W L PV I+ PA Sbjct: 114 ERLAGLDRKDAKGNPDPRPRSPNTVRLDLALLGHMFTTAIREWGIGLPSNPVQNIRRPAP 173 Query: 179 RNKRVRWLEKEEAKRLIDECPEP----LKSVVKFALATGLRKSNIINLEWQQIDMQRRVA 234 R R L + E RLI L +V+ AL TG+R + I L QID++RRV Sbjct: 174 PPGRERRLNQTEEDRLIAAVDSHSNPMLGWIVRLALETGMRSAEITTLRRNQIDLKRRVV 233 Query: 235 WVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRID 294 + E+K+ V L+ TA +L++ + + + G ++ + Sbjct: 234 RLL--ETKNTAPRTVPLSSTATAILQEALANPVRPIDTDLV----FFGEPGRDGQRRPYN 287 Query: 295 SKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAP 354 WL A AG+++ FHDLRH S L++ G+ + + G +S++M++RY HL Sbjct: 288 FNKPWLKAKETAGMKELHFHDLRHEAVSRLVEGGLSDQQVAAISGHKSMQMLKRYTHLRA 347 Query: 355 NHLTEHARKIDD 366 L I D Sbjct: 348 EDLVNELDSIAD 359 >UniRef50_C5SDU6 Integrase family protein n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SDU6_CHRVI Length = 361 Score = 196 bits (498), Expect = 1e-48, Method: Composition-based stats. Identities = 81/359 (22%), Positives = 149/359 (41%), Gaps = 43/359 (11%) Query: 25 SLGTKDKRQAQELHDKRKAELW--RVEKLGDLPDVTFEEACLRWLEE---KADKKSLDSD 79 S K + A+ K +A R + + T ++A R+ E + + Sbjct: 29 SRTFKTRTAAERWARKFEAAALEDRAGLIMEGQKHTLKDAIKRYRTEILPDHTATTRPTY 88 Query: 80 KSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPK 139 R+++W +RL D++ AKI + K Sbjct: 89 AQRLDYWCAELGHLRLSDVTPAKIAGCRDELLTSK------------------------- 123 Query: 140 PVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKIPAVRNKRVRWLEKEEAKRLIDE 197 + T +LA++ ++L + W W++++P+ + P+V N R R+L ++E RL++ Sbjct: 124 --APATVHGYLAVLASVLTTCVKRWHWVKESPMAHVDKPSVANGRTRFLSQDELSRLLEA 181 Query: 198 CP----EPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNP--EESKSNRAIGVAL 251 C L V A+ TG R+ ++ L W+ +D+ + V ++ E + V + Sbjct: 182 CRASESPDLYLAVVLAITTGARRGELLGLRWRDVDLVKDVLYLRVDNETTTKGGVRAVRI 241 Query: 252 NDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDF 311 +L + + + A + + +D +T + +A RRAGIE F Sbjct: 242 ASQVKPILEARQAGYRRGKVADITGAALVF--PSRVSTRQPVDLRTPFRTALRRAGIEGF 299 Query: 312 RFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHAR-KIDDIFG 369 R+HDLRH+ AS++ G L + + G S + +RYAHLA E + D + G Sbjct: 300 RWHDLRHSAASFMAAHGASLVEIGAVLGHRSAQTTKRYAHLAEQAAHELVQGTADKVLG 358 >UniRef50_A8V435 Phage integrase family protein n=2 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V435_9AQUI Length = 324 Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats. Identities = 90/373 (24%), Positives = 158/373 (42%), Gaps = 60/373 (16%) Query: 1 MSLFRR-NEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEK--LGDLPDV 57 M LF+R N I+Y + G KR SL TKDK AQ L ++ K E + + L + + Sbjct: 1 MRLFKRENGIYYVEFE-RGKKR---SLKTKDKALAQRLFNQLKREYLKGKIILLSEGKKI 56 Query: 58 TFEEACLRWLEEKADKKSLDS---DKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRK 114 E +LE + +S ++ + ++ +H I +K +++ + VS + Sbjct: 57 KLSEFIEEYLEWCRENRSDETFKKARYVLQKLKDHTGDIYIKALTKKHLDEYVSTLL--- 113 Query: 115 TKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVI- 173 + +S T H+ IK+ L A +W++++ P+ Sbjct: 114 -----------------------AQGISRTTINIHIRTIKSALTKAV-EWEYVQNHPLEG 149 Query: 174 -KIPAVRNKRVRWLEKEEAKRLIDECPEPLKSVV-KFALATGLRKSNIINLEWQQIDMQR 231 K V R+L E+ ++ + V + + TG+R I L W+ ID+ R Sbjct: 150 YKQLKVHQTPPRFLLPEDIAKVEKVIDDEFWLFVFRLFVYTGMRLGEIHKLRWKHIDLNR 209 Query: 232 RVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKM 291 V V E++K+ ++ + ++ L + K V Sbjct: 210 NVIKV--EKTKTFQSRVIPIHPKLRAELEARTPAMGKVV------------------PYA 249 Query: 292 RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAH 351 + + + ++AG +D R HDLRHT+AS ++ +GV L +QE+ G +S YAH Sbjct: 250 KPTIEHKLKNCFKKAGFKDLRIHDLRHTFASLMVMAGVDLKTVQELLGHQSYRTTEIYAH 309 Query: 352 LAPNHLTEHARKI 364 L+P HL E +K Sbjct: 310 LSPQHLHEAIKKF 322 >UniRef50_C0N6F6 Site-specific recombinase, phage integrase family protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N6F6_9GAMM Length = 409 Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats. Identities = 78/394 (19%), Positives = 156/394 (39%), Gaps = 76/394 (19%) Query: 14 YSLPGGKRIKESLGTK---DKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRWLEEK 70 Y+ P G+R++ ++G A+++ + A++ + EK Sbjct: 50 YTAPDGRRLRYTMGNFPALSVPAARKMAETLYAQVKLGRDIQR---------------EK 94 Query: 71 ADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKI---YSAVSRMHNRKTKEIWKQKVQAAI 127 + + +F + + + K ++ + N++ ++ +++ Sbjct: 95 QTARDVKPVPKLGDFISDTYLPWFIAHHKAPKAKLPFNQFKHLFNKRLDKVTAWDIESWR 154 Query: 128 RKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVR---NKRVR 184 K +S T +++ +KA+ A +W+ +E+ P+ K+ + +R Sbjct: 155 SKR------HKDGLSASTSNRYIGTLKAMFNRAV-EWEVIEQNPITKVKKQKSDNRAIIR 207 Query: 185 WLEKEEAKRLIDECP-----------------------------EPLKSVVKFALATGLR 215 +L +E +RL + + +V + TG+R Sbjct: 208 YLSPDEEERLRASLRSRDRRLTQSNPFYADGRFTRLETILGGFQDHVHPMVLLLMNTGMR 267 Query: 216 KSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLR---DQIGKHHKWVFV 272 + + NL WQ +D+ + + SK+ + + LN A VL+ Q ++ VFV Sbjct: 268 RGEMFNLRWQDVDLNNKRITIVGNTSKTGQTRYIPLNVEAFNVLQMWSKQTKRNAGHVFV 327 Query: 273 HTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLS 332 K + +W R A I DFR HDLRH +AS L+ +G+ L+ Sbjct: 328 GKNG-------------KRFTNIDKAWKVLLRDAKIHDFRLHDLRHHFASRLVSAGIDLN 374 Query: 333 VLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDD 366 ++E+ G I+M RYAHLAP HL++ ++ Sbjct: 375 SVRELLGHSDIKMTLRYAHLAPAHLSDAVAVLNS 408 >UniRef50_A2SD71 Putative uncharacterized protein n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SD71_METPP Length = 334 Score = 194 bits (494), Expect = 4e-48, Method: Composition-based stats. Identities = 72/316 (22%), Positives = 142/316 (44%), Gaps = 29/316 (9%) Query: 57 VTFEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTK 116 + ++ A + + + R+++W+ G+ L D+++ +++A+ ++ ++ + Sbjct: 35 IALRHLIDAYMAAYAGRDTSRT--QRLDWWVAKLGGVSLADLTDDHVFTALEQLATQRGR 92 Query: 117 EIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDW----KWLEKAPV 172 + GK + + +P++ T ++ A + A+L A+R W Sbjct: 93 YFAGKDAD-----GKPVMKAKRRPLAPATLNRYQAALSAVLTWAQRRRIAPKNWQNPCRH 147 Query: 173 IKIPAVRNKRVRWLEKEEAKRLIDECP----EPLKSVVKFALATGLRKSNIINLEWQQID 228 +++ A +N+ VR+L E L+ C L +V L TG R+ + L W +D Sbjct: 148 VELKAEKNEIVRFLSDAERTALLAACRKSSWPRLYLLVMMGLTTGARRGELEALRWADVD 207 Query: 229 MQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAV 288 ++R A V+ SK+ + L L G + VF T+ Sbjct: 208 LERAEAAVH--RSKNGDKKVLPLVPAVVDELAKHAGAANALVFPSTRRPD---------- 255 Query: 289 RKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRR 348 + + +W A + AG++ FRFHDLRH+ AS L Q+G L + E+ G + + +R Sbjct: 256 --IAYNFDPAWDRALKAAGVKSFRFHDLRHSCASALAQNGATLLEIAEVLGHRQLSVTKR 313 Query: 349 YAHLAPNHLTEHARKI 364 Y+HLA +H T+ ++ Sbjct: 314 YSHLATDHKTKLINRV 329 >UniRef50_B7DTQ3 Integrase family protein n=2 Tax=Bacillales RepID=B7DTQ3_9BACL Length = 392 Score = 194 bits (493), Expect = 4e-48, Method: Composition-based stats. Identities = 83/399 (20%), Positives = 149/399 (37%), Gaps = 44/399 (11%) Query: 3 LFRRNEIW----YASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 + +R W Y Y G KR K G K KR A+ ++ + + T Sbjct: 15 IRKRGNSWSVVVYLGYDEQGKKRYKWHGGFKTKRDAERFLATLVEQVHDGTYV-EPSKKT 73 Query: 59 FEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEI 118 WL++K K + +S + + +EH I + ++ K + Sbjct: 74 VGAYLREWLDDKRTKVRPGTLRSYV-WLVEHH------------IIPRIGQLELAKLRPS 120 Query: 119 WKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAP--VIKIP 176 QK+ ++ G E +S ++ ++ L A + W + + ++ P Sbjct: 121 HIQKLYTDLQTGDEH-------ISKRSVLHAHRILHQALDRAVK-WGLITRNVTDAVEPP 172 Query: 177 AVRNKRVRWLEKEEAKRLIDECPE-PLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAW 235 + +R E+ + + +TG+R ++ L W+ +D+Q + Sbjct: 173 RPARQEMRVWTDEQLDAFLQAARKSRYYVAFVLLSSTGMRVGEVLALRWEDVDLQAGLVR 232 Query: 236 VNPEESKSNR------------AIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGT 283 V S + + +AL +LR + + A + D Sbjct: 233 VVRSYSYTGKGYRIEEPKTESGRRSIALPPAVVDLLRKHKTEQAARRLMVGSAWEDNDLV 292 Query: 284 STPAVRK--MRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWE 341 A K ++ + +TS+ R G+ R HDLRHT A+ L+Q GV V+QE G Sbjct: 293 ICTAFGKPILQHNLRTSFHRIIERTGLPRIRLHDLRHTHATILLQRGVHPKVVQERLGHS 352 Query: 342 SIEMV-RRYAHLAPNHLTEHARKIDDIFGDNVPNMSHSE 379 I + Y+H+ P AR IDD+F + +S E Sbjct: 353 DITLTLNTYSHVVPGLQEAAARSIDDLFSPSSKRISTHE 391 >UniRef50_A1SRZ5 Phage integrase family protein n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SRZ5_PSYIN Length = 337 Score = 193 bits (491), Expect = 7e-48, Method: Composition-based stats. Identities = 87/375 (23%), Positives = 148/375 (39%), Gaps = 57/375 (15%) Query: 6 RNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGD--LPDVTFEEAC 63 + I Y + GKRI +S K K++AQ + L + L + F +A Sbjct: 10 KKSITYRVEFMRDGKRISKS--FKLKKEAQTFMALLLVDNDLANSLTNHILTTLNFSDAV 67 Query: 64 LRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKV 123 + L+ D S R+ +W+ F +++ ++ ++ + + R+ N K Sbjct: 68 KKLLD--QDNGRDPSKHQRLRYWVSVFGSLKVGKVTRQQVKAELKRLSNDK--------- 116 Query: 124 QAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPA--VRNK 181 + T ++ A + ++ R ++ ++ PV I + Sbjct: 117 ------------------APATLNRYKAALGSLYRYLSDEFD-IDYNPVKGIRQYTENDA 157 Query: 182 RVRWLEKEEAKRLIDECP----EPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVN 237 R R+L EE L + L +V A+ TG R+S ++ LEW I+ + + A + Sbjct: 158 RTRFLSDEELSILFAMVKQSKWDQLFLLVLMAITTGARRSEMLTLEWDDINFKTKTAHL- 216 Query: 238 PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKT 297 +K+ + L L +VF H + Sbjct: 217 -PNTKNGEQRILTLTGDVITELMKYRC-IGGYVFPHPDDPTIYFR-----------NFDI 263 Query: 298 SWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHL 357 W SA R I DFRFHDLRHT AS L +G L + ++ G +SI M +RY+HL H Sbjct: 264 HWQSALREGEITDFRFHDLRHTCASLLAMNGASLLEIAQVLGHKSITMTQRYSHLCIEHK 323 Query: 358 TEHARKIDDIFGDNV 372 A+ D +FG + Sbjct: 324 ---AKLTDRVFGGII 335 >UniRef50_A1AUY6 Phage integrase family protein n=2 Tax=Desulfuromonadales RepID=A1AUY6_PELPD Length = 402 Score = 193 bits (491), Expect = 8e-48, Method: Composition-based stats. Identities = 83/338 (24%), Positives = 151/338 (44%), Gaps = 20/338 (5%) Query: 50 KLGDLPDVTFEEACLRWLEEKA-----DKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIY 104 LG+ P V+ ++A R E KA + + K R + E F ++A Sbjct: 70 SLGEFPAVSVQDARSRVAEHKALLARDKDPAAERGKVRADLTFEEFSTQHYLPHAKAHKQ 129 Query: 105 SA---VSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQ-TKAKHLAMIKAILRAA 160 + +++ R + K ++QA + + + K +T T LA +K +L A Sbjct: 130 TWDDDKNQIERRLNPILGKLRLQAITPRDVAMVHSKEKERTTACTANHLLATLKRMLNLA 189 Query: 161 ERDWKWLEKAPVIKIPAVRNK--RVRWLEKEEAKRLIDECPEPLK----SVVKFALATGL 214 + W LEK P + R R+L KEE + + + + ++ L TG Sbjct: 190 VK-WGLLEKNPAGGQEKFKEGPLRERYLSKEELPKFLKALEDQDDLLSVAALRMLLYTGC 248 Query: 215 RKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHT 274 R+ I++L W+ + + ++ ++K+ R+ V LN A +V++D + + T Sbjct: 249 RREEIMSLRWENVRLDEERIFL--PKTKNGRSRTVHLNARAKEVIQDLQARKDQE--DRT 304 Query: 275 KAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVL 334 + ++ + + D + + AC AGI++FR HDLRHT+AS + SG L + Sbjct: 305 RGSEYVFPSRQGTKKGYIYDLRKPFEKACLNAGIDNFRIHDLRHTFASMAVSSGADLYAV 364 Query: 335 QEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIFGDNV 372 Q + G + I M +RYAHL + L + + ++F Sbjct: 365 QRLLGHQDIAMTQRYAHLNADDLKKATEGVSEMFDRAA 402 >UniRef50_B7RVJ7 Site-specific recombinase, phage integrase family n=4 Tax=unclassified Gammaproteobacteria (miscellaneous) RepID=B7RVJ7_9GAMM Length = 392 Score = 193 bits (491), Expect = 8e-48, Method: Composition-based stats. Identities = 93/384 (24%), Positives = 147/384 (38%), Gaps = 59/384 (15%) Query: 8 EIWYASYSLPGGKRIKESLGTK-------DKRQAQELHDKRKAELW-RVEKLGDLPDVTF 59 + Y GGK ++G +++A+ L + + + E +T+ Sbjct: 45 GSYRLRYKSEGGKTAYVTIGRSCDISLAGARKRARHLKAQIELGADPQAEAKAKKQVLTW 104 Query: 60 EEAC-LRWL-EEKADKKSLDSDKSRIEFWLEHFEG-IRLKDISEAKIYSAVSRMHNRKTK 116 +L K K+S +D + F G RL I+ +++ + + Sbjct: 105 NAFFTDHYLPHVKQHKRSWKNDLEMHNLRISAFIGNKRLNKITRSEVQRFHASLVEED-- 162 Query: 117 EIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIP 176 +S T HL +I+ L A DW+ LE PV K+ Sbjct: 163 ------------------------LSPATADHHLKLIRQALNLAV-DWELLEANPVAKVK 197 Query: 177 AV--RNKRVRWLEKEEAKRLIDECPEP----LKSVVKFALATGLRKSNIINLEWQQIDMQ 230 N+ R+L EE +RL+ + +V+ F L+TG R S ++ EW ID + Sbjct: 198 LFNQDNQVERYLSDEEMQRLLKVLKTDSNRVVCNVILFLLSTGARVSEALSAEWSDIDRK 257 Query: 231 RRVAWVNPEESKSNRAIGVALNDTACKVLRDQ-IGKHHKWVFVHTKAAKRADGTSTPAVR 289 RV + SKS + V LND A VL H +FV R Sbjct: 258 NRVWVIQATNSKSKKKRSVPLNDVAIGVLDALDTEGKHDRLFVGK--------------R 303 Query: 290 KMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRY 349 W AG+ED+R HDLRH++AS L+ +G L +Q+ G ++ RY Sbjct: 304 GPLTTINKVWFRIRSEAGLEDYRIHDLRHSYASLLVNAGHSLFEVQQALGHSDPKVTMRY 363 Query: 350 AHLAPNHLTEHARKIDDIFGDNVP 373 AHL+ L A D + + Sbjct: 364 AHLSKESLQRAANSASDKITEAME 387 >UniRef50_A8MGP9 Integrase family protein n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MGP9_ALKOO Length = 369 Score = 193 bits (491), Expect = 8e-48, Method: Composition-based stats. Identities = 81/394 (20%), Positives = 158/394 (40%), Gaps = 55/394 (13%) Query: 2 SLFRRNEIWYASYSLPG--GKRIKE-SLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 S+ ++N WY GKR ++ G +++A++ + +L D ++T Sbjct: 4 SIVKKNHKWYIVVDSIDENGKRKRKWISGFNTQKEAEKKLPEILQQL-NTNTFVDTNNIT 62 Query: 59 FEEACLRWLEEKADK----KSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRK 114 + WLE+ A + D E ++L+ I I V++++N Sbjct: 63 LRDYMQLWLEDYAKPNVAPTTYDKYTYAANKVSEILGNMKLQQIKPIHIQQLVNKLNNSD 122 Query: 115 TKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIK 174 V+ T + ++ + A + W++++ P + Sbjct: 123 --------------------------VTPSTVLSYYRVLNTAINQAVK-WQFIQYNPCVA 155 Query: 175 I--PAVRNKRVRWLEKEEAKRLIDECPEP-LKSVVKFALATGLRKSNIINLEWQQIDMQR 231 + P ++ L+++E + L+D+ + L V+ AL GLR+ I+ L+W+ ID Sbjct: 156 VTPPRNTKNKMMILDQDEIQILLDKSKDHVLYPVIVLALLCGLRRGEILGLQWENIDFFS 215 Query: 232 RVAWV-------------NPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAK 278 V + ++ + R V ++ +VL+ + + ++ + Sbjct: 216 GVIHLENNLVMANNESILKETKTSTGR-RAVDISSNVVEVLKKVKKQKMSYKLLYGSSYH 274 Query: 279 RADGTST-PAVRKMRIDS-KTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQE 336 ++ T R R D ++ A + RFHDLRHT AS L++SG+ V+QE Sbjct: 275 DSNFVCTWEDGRPFRPDYIPKAFAKILVSANLPKIRFHDLRHTHASILLKSGIHPKVVQE 334 Query: 337 MGGWESIEMV-RRYAHLAPNHLTEHARKIDDIFG 369 G SI + Y+HL P+ A K+ +F Sbjct: 335 RLGHSSISITLDTYSHLVPSLQKSAAEKMATMFS 368 >UniRef50_Q7MKK6 Integrase n=6 Tax=Proteobacteria RepID=Q7MKK6_VIBVY Length = 402 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 88/392 (22%), Positives = 158/392 (40%), Gaps = 69/392 (17%) Query: 10 WYASYSLPGGKR--IKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRWL 67 +Y Y + G +R + S QA++L ++ ++ E + D Sbjct: 42 YYLYYRIHGKQRNFLLGSANALTPAQARDLAKEKAGQVAAGEDVQDT------------- 88 Query: 68 EEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAK------IYSAVSRMHNRKTKEIWKQ 121 +A K+ + + +F EH+ + ++ I S + + EI Sbjct: 89 RHEAKKREQRNSLTLSKFLEEHYSAYLMSINAKTAQKSLMCIQSNFKHLSTKPLVEITAW 148 Query: 122 KVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKIPAVR 179 +Q + + + T + ++A+ A +W +++ + +KIP + Sbjct: 149 DIQQWVAER------SKAGRAPATISYAYNRLRAVFNRAV-EWGFIDSHSLDNVKIPRID 201 Query: 180 NKRVRWLEKEEAKRLIDECPEP---------------------------LKSVVKFALAT 212 NKR+R+L E L++ L+ ++ AL T Sbjct: 202 NKRIRYLSVSEEAALLESLKARDARLKDEALQRYGKRAQRLVSQRYVDFLEPLIVLALNT 261 Query: 213 GLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFV 272 G+RK I++L+W I+M+ R + E +KS + LN+T +L+ ++ V Sbjct: 262 GMRKGEILSLKWSHINMEDRYLTIRSENAKSKNKRTIPLNNTVYTMLQAWHEQNPDTELV 321 Query: 273 HTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLS 332 + K D + W S + AGIE+FRFHDLRH +AS L+ L+ Sbjct: 322 FERNGKPLDSY------------QYQWESLLKEAGIENFRFHDLRHHFASKLVMKEADLN 369 Query: 333 VLQEMGGWESIEMVRRYAHLAPNHLTEHARKI 364 V++E+ G ++M RYAHLAP H I Sbjct: 370 VVRELLGHADLKMTLRYAHLAPEHKASAVNLI 401 >UniRef50_A3V904 Phage integrase n=5 Tax=Rhodobacteraceae RepID=A3V904_9RHOB Length = 445 Score = 191 bits (484), Expect = 5e-47, Method: Composition-based stats. Identities = 89/401 (22%), Positives = 165/401 (41%), Gaps = 59/401 (14%) Query: 7 NEIWYASYSLPGGKRIK---ESLGTKDKRQAQELHDKRKAELWR-----VEKLGDLPDVT 58 +Y Y+ K ++G QA+ L + + +L E+ T Sbjct: 42 GMTYYMRYTDDRSKTRYIKLANVGDITLPQARGLCRQHRNKLALGIDPLAERAVKRLVPT 101 Query: 59 FEEAC-LRWLE-EKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTK 116 F + R+L +A+K+S +D++ L ++ Sbjct: 102 FGDFVRERYLPFAQANKRSWKTDETLARTHL-------------------TPQLGTMHMD 142 Query: 117 EIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKW--LEKAPV-- 172 EI + V + + G + + + + L +++ + A RDWK + P Sbjct: 143 EITIEDVLSLQQIGLK------AGAAPASINRRLILLRYMFNLAWRDWKIAGVTGNPTHG 196 Query: 173 IKIPAVRNKRVRWLEKEEAKRLIDECPEP----LKSVVKFALATGLRKSNIINLEWQQID 228 +++ N++ R++ EE L E L+ +V F L TG R++ +++ W+ +D Sbjct: 197 VRLLKENNQKERYVRAEELALLYRAVKESQNKMLQHIVAFLLLTGTRRNEVLHATWEDVD 256 Query: 229 MQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGK-HHKWVFVHTKAAKRADGTSTPA 287 + + + + ++KS A V LND A VL+ G+ ++F + K K Sbjct: 257 LIKGMWRI--PQTKSGFARHVPLNDGAYAVLQQMQGRSQSHYIFGNPKTGK--------- 305 Query: 288 VRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVR 347 + +W SA +AG+ D R HDLRHT+AS LI +G + +Q++ G I+ + Sbjct: 306 ---PYVHVWYAWNSARVKAGLPDVRLHDLRHTFASLLINNGRSIYEVQKLLGHTQIKTTQ 362 Query: 348 RYAHLAPNHLTEHARKIDDIFGDNVPNMSHSEIME-DIKKA 387 RYAHL L + + + + ++E DI A Sbjct: 363 RYAHLTQETLLDASNIGTAAVAATLGMVPQRNVIEGDIYDA 403 >UniRef50_C4KVM9 Site-specific recombinase, phage integrase family n=8 Tax=Burkholderiales RepID=C4KVM9_BURPS Length = 339 Score = 190 bits (483), Expect = 7e-47, Method: Composition-based stats. Identities = 76/360 (21%), Positives = 134/360 (37%), Gaps = 34/360 (9%) Query: 5 RRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACL 64 +R W G + TK + A + + + D T + Sbjct: 6 KRENGWMCQVRKKGYPATSKKFATKIEALAWGRMIESEMDRGLFASRNDAERTTLADLLD 65 Query: 65 RWLEE-KADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKV 123 R+ + K+S SD R + +L ++ + + Sbjct: 66 RYTRDISPTKRSGGSDMGRAGKLKKQLGAYKLTALTASHLVDYRD--------------- 110 Query: 124 QAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKI--PAVRNK 181 K VS QT L ++ +L A R+W + A V K+ P Sbjct: 111 ------------ARLKEVSPQTVVHELNLLNRVLTLATREWGIVLPAGVPKVIKPRKPQG 158 Query: 182 RVRWLEKEEAKRLIDECPE-PLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEE 240 R R L +E + +ID L+ ++ A+ATG+R+ + +L W+ ID+ RR A + Sbjct: 159 RDRRLHPDEIQAIIDATESLDLRDFIRLAVATGMRRGELASLRWESIDLARRTAHLPV-- 216 Query: 241 SKSNRAIGVALNDTACKVLRDQIGKHHKWVF-VHTKAAKRADGTSTPAVRKMRIDSKTSW 299 +K++ V L+ A +L + F V + A RA + RK+ + + Sbjct: 217 TKTDSPRTVPLSTDAVTILHARRVAQCVAPFNVTSDALTRAFCRAVQRARKLYVSTCAVL 276 Query: 300 LSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTE 359 + R HDLRH S L + G+ + + G +++ M++RY HL L + Sbjct: 277 DRPIDSNWLIGIRLHDLRHEATSRLFEKGLNPMEVASITGHKTLSMLQRYTHLRAEDLAK 336 >UniRef50_A0LKH4 Phage integrase family protein n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LKH4_SYNFM Length = 348 Score = 190 bits (482), Expect = 8e-47, Method: Composition-based stats. Identities = 75/373 (20%), Positives = 145/373 (38%), Gaps = 55/373 (14%) Query: 1 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGD-LPDVTF 59 MS++RR E+++ + G RI++S T ++ +A + + L V +++ Sbjct: 1 MSVYRRGEVYWVDVKVKGHPRIRKSAATSERLKALDFEAALRRTLTGVVSHEPIRGEMSL 60 Query: 60 EEACLRWLE-EKADKKSLDSDKSRIEFWLEHFE-GIRLKDISEAKIYSAVSRMHNRKTKE 117 EA R + KKS + LE IRLKDI E ++ V ++ + Sbjct: 61 SEAMARAFKVHWNHKKSAKTVGFHARSLLEKLGNDIRLKDIGENEVRGLVRQLQSDGN-- 118 Query: 118 IWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPA 177 S T L++++ +LR + +W+ +++ P Sbjct: 119 ------------------------SAATINSKLSVLQTLLRMSCNEWRVIDRVPRFDRLK 154 Query: 178 VRNKRVRWLEKEEAKRLIDECPEPLK----SVVKFALATGLRKSNIINLEWQQIDMQRRV 233 + R+R L EE RL+ + + L TG S +++L+W+ +D+ Sbjct: 155 EKEGRLRTLSPEEESRLLALLRRTGRHDAADLYMVLLDTGASLSEVLSLKWKGVDLVGGK 214 Query: 234 AWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRI 293 ++ E S R + + +L ++G G +P Sbjct: 215 IGIDVE---SGRNRILPMTRRVRSMLMQRMGM----------------GIKSPFSNVTYQ 255 Query: 294 DSKTSWLSACRRAGI---EDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYA 350 ++ +W ++ G+ F H LRHT+A+ +Q G+ L L+ + G +I + RYA Sbjct: 256 QAEYNWKWVRKQMGLGGDPGFVIHSLRHTFAARTVQRGIGLPALKALLGHSTIRLTERYA 315 Query: 351 HLAPNHLTEHARK 363 ++ Sbjct: 316 RFGAGNIDRAVDA 328 >UniRef50_C6MQB4 Integrase family protein n=1 Tax=Geobacter sp. M18 RepID=C6MQB4_9DELT Length = 340 Score = 190 bits (482), Expect = 9e-47, Method: Composition-based stats. Identities = 83/381 (21%), Positives = 161/381 (42%), Gaps = 64/381 (16%) Query: 1 MSLFRRN--EIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 MS+++R ++Y ++++ G R+ +S G K++A+ AE +K+ + +T Sbjct: 1 MSVYKRGDKGVFYMNFTV-NGVRVFKSTGKFTKKEAKH------AEAMERQKMMEQASLT 53 Query: 59 FEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEI 118 +E R L +A ++ + W + +G + S + + + + + I Sbjct: 54 PQEIAARTLLSEAIEQVYQT------RWKNNKDGKQ----SRTRALRLIELIGDVQVGAI 103 Query: 119 WKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAV 178 + V+ I K E V + T ++L ++K ILR ++W ++ + Sbjct: 104 NEDVVRKIIFK------LEATKVKSATVNRYLEVLKTILRYKRQEWDFIH------LKKQ 151 Query: 179 RNKRVRWLEKEEAK---RLIDECP--------EPLKSVVKFALATGLRKSNIINLEWQQI 227 R+R L K E RL+ E + +V+ L TG R S ++NL + + Sbjct: 152 PKGRIRVLSKPEEDKAIRLLRETDHCSRRHFYPQVADLVEILLDTGCRLSEVLNLPYDDV 211 Query: 228 DMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPA 287 + + + +K +R + + ++L+++ + K F T Sbjct: 212 NFDTNLISIWI--NKGDRPRSIPMTYRVRRILQERQKTNKKKPFSVTIY----------- 258 Query: 288 VRKMRIDSKTSWLSACRRAGIED---FRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIE 344 + +W + +E F H LRHT A+ L+ GV L V++E G SI+ Sbjct: 259 ------QAGKAWAWVRKEMKLERDTEFVLHALRHTCATRLVNKGVDLYVVKEWLGHSSIQ 312 Query: 345 MVRRYAHLAPNHLTEHARKID 365 + RYAHLAP+ L A ++ Sbjct: 313 VTERYAHLAPDKLAHAAAVLE 333 >UniRef50_Q6AMU1 Related to integrase/recombinase n=1 Tax=Desulfotalea psychrophila RepID=Q6AMU1_DESPS Length = 357 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 82/380 (21%), Positives = 141/380 (37%), Gaps = 38/380 (10%) Query: 1 MSLFRR-----NEIWYASYSLPGGKRIKESLGTKDKRQAQ--ELHDKRKAELWRVEKLGD 53 M+ F++ +W A + G ++S TK + QA E +A+ +L + Sbjct: 1 MATFKKRENKSGIVWEAHIRIKGHTPRRKSFPTKCRAQAWAVEYEALLRAKDAGDPRLAE 60 Query: 54 LPDVTFEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNR 113 ++ +EA ++ E+ +S H + D S A I A+ + Sbjct: 61 --QISLQEALDKYAEDSTAAGKKESTLDLESRATRHLTRLLGADRSLADIRPALVAQYQL 118 Query: 114 KTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVI 173 ++ + S LA++ + A + W K PV Sbjct: 119 TRQK---------------------EGYSNSAIRTELAILSKMYNNARKIWGLNIKNPVN 157 Query: 174 KIPAVRNKR--VRWLEKEEAKRLIDEC----PEPLKSVVKFALATGLRKSNIINLEWQQI 227 I V + R+L EAK ++DE V + TG+R S + L + I Sbjct: 158 DITRVPPDKGNTRFLTTAEAKIVLDESKNIRNPKFYPFVLLLMHTGMRSSEVARLRPEDI 217 Query: 228 DMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPA 287 + + ++ E+KS V L A +VL+ + + F+ + D PA Sbjct: 218 NFETLSLRIH--ETKSGIPRSVPLTTKAAEVLQTVSPEATGYYFLKENHLNQKDIRLAPA 275 Query: 288 VRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVR 347 I FR HDLRHT AS L+ +GV + + ++ G ++ M Sbjct: 276 KAFSSCWRSLRKKMEASGHKIPHFRPHDLRHTAASHLLMAGVDIREVADILGHSTLAMTM 335 Query: 348 RYAHLAPNHLTEHARKIDDI 367 RY HL + E KI+ + Sbjct: 336 RYTHLLDSRRQETISKINHL 355 >UniRef50_C1XYN2 Site-specific recombinase XerD n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XYN2_9DEIN Length = 387 Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats. Identities = 86/386 (22%), Positives = 149/386 (38%), Gaps = 33/386 (8%) Query: 2 SLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEE 61 ++++R + Y + GKR + T+ K A++L + A + L D +T +E Sbjct: 9 TIYKRADGRYEYSLMISGKRHRGYAKTR-KEAAKKLAELLVA--YGRNLLPDPDRITLKE 65 Query: 62 ACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQ 121 C RWL + + + + LE L DI AV R+ ++ Sbjct: 66 FCERWLTS-VEHRVKPTTHYGYKVALEKHAIPILGDI-------AVQRLQPLHLTHLYAD 117 Query: 122 KVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNK 181 ++ I + K +S T + A L A R W L P ++ + Sbjct: 118 LLKKRIHPNDPKRL---KTLSPTTVRLVHRTLHAALEDAVR-WGLLPWNPADRVKPPQAP 173 Query: 182 RV--RWLEKEEAKRLIDECPE-PLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNP 238 R EE R + E L ++ AL TG+R+ ++ L+W ID Q WV Sbjct: 174 RYTGEVWTPEEVWRFLAEAQHSRLYALFFLALMTGMRRGELLGLKWADIDWQEGAIWVRQ 233 Query: 239 EESKSN------------RAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTP 286 +K+ + V ++ +VL+ + K A T Sbjct: 234 NLTKAGSKRVVQSPKTYRSSRPVDVSSDVLEVLQQHREQQEKDRLGIGDAWTDEGWVFTT 293 Query: 287 AVRKM--RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIE 344 +V + + +L+ +RA +++ RFHDLR T S L +GV V+ E G S+ Sbjct: 294 SVGTPIEPSNLRREFLAIIKRAKVKEIRFHDLRDTHVSLLALAGVDPKVVSERVGHASVA 353 Query: 345 MVRR-YAHLAPNHLTEHARKIDDIFG 369 ++ Y HL + A + ++ G Sbjct: 354 FTQQTYQHLFRAQRKKAALAVGELLG 379 >UniRef50_C0QB98 Putative uncharacterized protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QB98_DESAH Length = 365 Score = 189 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 85/374 (22%), Positives = 152/374 (40%), Gaps = 46/374 (12%) Query: 5 RRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACL 64 R N+++ L GK +S A+++ K K + + + Sbjct: 28 RTNKLFKVRIKLSNGK--WKSKQVNTLELAKKVEAKFKTQSIEEDVFNIHRAPVIDGVWS 85 Query: 65 RWLEEKA-DKKSLDSDKSRIEFWLE-HFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQK 122 ++L + +K+S D+ R E + H +G+++ I+ + + ++ M + T + Sbjct: 86 KYLTWASLNKRSWIDDRIRWELHISAHLKGMKMDKITPSHVQDILNHMATKDTPK----- 140 Query: 123 VQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKIPAVRN 180 + T + L +IK + + + + P ++ P N Sbjct: 141 ---------------GGHYAPATIKQVLVLIKRVFNWSMQQGLYQGGNPCKSVEAPMFDN 185 Query: 181 KRVRWLEKEEAKRLIDEC----PEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWV 236 + L+K + L+ E V+KFAL +G RK +++L W +D + + + Sbjct: 186 RINNPLDKSGLRSLMSVLDTWNNERAILVIKFALYSGKRKGEVLSLTWDSVDFENHLLTL 245 Query: 237 NPEESKSNRAIGVALNDTACKVLRDQIG-KHHKWVFVHTKAAKRADGTSTPAVRKMRIDS 295 +KS +A + LN+ +L K +VF T Sbjct: 246 QAMNTKSKKAQSLPLNNHCMTILERCRKLKVSDYVFPSTLGN-------------YYNTF 292 Query: 296 KTSWLSACRRAGIEDFRFHDLRHTWASWLIQSG-VPLSVLQEMGGWESIEMVRRYAHLAP 354 +W +RAGI RFHDLRHT+AS+L SG V + L+E+ G +IEM +RYAHL Sbjct: 293 DETWKRIRKRAGI-SIRFHDLRHTYASYLASSGKVDIYTLKELLGHSTIEMTQRYAHLVN 351 Query: 355 NHLTEHARKIDDIF 368 L D++F Sbjct: 352 GVLKRAVCVADEVF 365 >UniRef50_D2LSV7 Integrase family protein n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LSV7_BACS4 Length = 391 Score = 189 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 82/400 (20%), Positives = 153/400 (38%), Gaps = 56/400 (14%) Query: 7 NEIWYASYSL---PGGKRI--KESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEE 61 N W SL GKRI ++++ K+K +A++ + E+ E + D + F++ Sbjct: 10 NNRWRLEVSLGVDQDGKRIKKRKTITAKNKTEAKKRLAEFVTEIEAGEYI-DPSKMKFKD 68 Query: 62 ACLRWLEEKADK----KSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMHNRKTK 116 W + K K+L++ KS I + + F +L + I + + + + Sbjct: 69 FVKEWETKYGMKHLGAKTLETYKSIINNYLIPTFGNKKLDEFKPINIINYLDCLGEDNAR 128 Query: 117 EIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IK 174 + K+ +S+ + H +++ I A ++W ++ PV +K Sbjct: 129 KDGKE-----------------GGLSSSSIKYHYRVLRNIFSRA-KEWIIIKNNPVESVK 170 Query: 175 IPAVRNKRVRWLEKEEAKRLIDEC---PEPLKSVVKFALATGLRKSNIINLEWQQIDMQR 231 P V ++ K+E L++ P K +V AL GLR+ I+ L+W ID+ Sbjct: 171 PPKVTQEKTSVYTKDEVIELLELLKNEPIHQKLMVTAALMAGLRRGEILGLQWDDIDLDA 230 Query: 232 RVAWVN---------------PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKA 276 +N P+ + S R + + + + + K + Sbjct: 231 GTISINHSLQYTKEKGYVLGPPKNNSSIRKVSIPM--YLVEEFKKYKRTKSKERIQAAEL 288 Query: 277 AKRADGTSTPAVRKMRIDSKTS----WLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLS 332 + + + T+ W +R G + RFHDLRHT A+ LI G Sbjct: 289 WEGGKYFYVFSSWNGKPFYPTAVGTWWRRFLKRKGFKYIRFHDLRHTAATLLINEGEHAK 348 Query: 333 VLQEMGGWESIEMVR-RYAHLAPNHLTEHARKIDDIFGDN 371 + G I+ Y H + A K++ IFG+ Sbjct: 349 TISARLGHADIKTTMNIYGHYLREADEKAANKLNSIFGNT 388 >UniRef50_B8FGB9 Integrase family protein n=2 Tax=Desulfobacteraceae RepID=B8FGB9_DESAA Length = 373 Score = 189 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 77/367 (20%), Positives = 145/367 (39%), Gaps = 41/367 (11%) Query: 2 SLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGD-LPDVTFE 60 +L+ R + W+ Y G+ ++ES G+ K A+EL KR+A++ G V F+ Sbjct: 3 TLYLRGKTWWIKYY-HNGEMVRESSGSAKKMIAKELLAKREADIAYGRTPGVHFEKVLFK 61 Query: 61 EACLRWLEEKA--DKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEI 118 + +L + K+SL + F + I+ +I + Sbjct: 62 DLAEDFLRDYRINKKRSLARADLCVRKLKRSFGRDSVPAITTPRINQYIE---------- 111 Query: 119 WKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRA-AERDWKWLEKAPVIKIPA 177 + + + T + L+ +K +L AE+ +++ P IK+ Sbjct: 112 ----------------MRMEEGAANATINRELSALKRMLNLGAEQTPPLVDRVPKIKMLQ 155 Query: 178 VRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVN 237 N R + E +E + D P+ L+ V F G R I L W Q+D R A + Sbjct: 156 EDNVRTGFFEHDEFLGVRDALPDYLQGFVTFGYKYGWRFQEIAGLTWAQVDRDRWTARLE 215 Query: 238 PEESKSNRAIGVALNDTACKVLRDQIGKHHKW--VFVHTKAAKRADGTSTPAVRKMRIDS 295 +K+ V L+ ++ + Q + K + + +R G ++ Sbjct: 216 VGTTKNKAGRMVFLDPELIEIFKTQWKQRSKHINILPYVFPNRRHTGKI--------VEI 267 Query: 296 KTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPN 355 + +W +A + AG+ FHDLR T ++++GVP +V + G ++ + RY + Sbjct: 268 RFAWKNALKEAGVSYKLFHDLRRTAVRNMVRAGVPENVAMRVSGHKTRAVFDRYNIVDER 327 Query: 356 HLTEHAR 362 L Sbjct: 328 DLLMATE 334 >UniRef50_C4KAG8 Integrase family protein n=1 Tax=Thauera sp. MZ1T RepID=C4KAG8_THASP Length = 330 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 81/373 (21%), Positives = 143/373 (38%), Gaps = 58/373 (15%) Query: 2 SLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDL--PDVTF 59 S+ +R W + G +S T K A+ + E+ + T Sbjct: 3 SIRQRGNRWQCRVTRHGFPPETKSFAT--KADAETWARSIEVEMDKGVHQNRASVERTTL 60 Query: 60 EEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSA-VSRMHNRKTKEI 118 + LR+ EE K D++ IRL + K+ ++ + + Sbjct: 61 ADILLRYAEEVTPCKKGAKDEA-----------IRLNALRANKLAKHSLANLSAAAVAKF 109 Query: 119 WKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKIP 176 +++ K VS T + LA+I ++L A R+W + + V I+ P Sbjct: 110 RDERL---------------KTVSAGTVLRDLALISSVLNHARREWGFPVENAVQAIRKP 154 Query: 177 AVRNKRVRWLEKEEAKRLIDECPE------PLKSVVKFALATGLRKSNIINLEWQQIDMQ 230 R R L +E RL+ L+ ++ AL T +R+ ++ L W+ + + Sbjct: 155 RQPQGRERVLSHDEEARLLAASAPIGRRSPWLQPIIILALETAMRRGELLALRWEHVSLD 214 Query: 231 RRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRK 290 +R A + ++K+ V L+ A L+ VF ++ A Sbjct: 215 KRTALL--PDTKNGTRRLVPLSPRAIDTLKHMPRAIDGRVFPISEPA------------- 259 Query: 291 MRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYA 350 + AC RAGI+ FHDLRHT + L + L+ L + G +S++M++RY Sbjct: 260 ----LHLRFKLACDRAGIDGLHFHDLRHTATTRLAEKLTNLAELSAVTGHKSLQMLKRYY 315 Query: 351 HLAPNHLTEHARK 363 H L E + Sbjct: 316 HPNAEALAEKLAR 328 >UniRef50_C1SNQ2 Site-specific recombinase XerD n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SNQ2_9BACT Length = 342 Score = 188 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 80/368 (21%), Positives = 142/368 (38%), Gaps = 45/368 (12%) Query: 1 MSLFRR-NEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTF 59 M L++ N +Y + K SLGTK+K +A+ + K ++ + T Sbjct: 1 MRLWKHSNGTYYVIID----RNHKRSLGTKNKAEAERIFKALKKSDFQKKIADLEKTETI 56 Query: 60 EEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIW 119 E LE+ KK + S + L FEG + + ++ + + + Sbjct: 57 SEFFADCLEDYKYKKEKATYTSMS-YSLNAFEGFIGEKL--------LNGVTKKDLSDFT 107 Query: 120 KQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKIPA 177 +++A K + + IKA A +W+ L + P+ K Sbjct: 108 THRLKAGYAK--------------TSINIDIRNIKAAFSKAV-EWEKLAQNPLNGFKQLK 152 Query: 178 VRNKRVRWLEKEEAKRLIDEC-PEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWV 236 + ++L ++ + + PL+ F + TG R+S + L W ID R V + Sbjct: 153 IDKNLPKFLTFDDLDKFANILGDNPLRHAFFFYVLTGCRRSEALVLTWDDIDFTRMVVHI 212 Query: 237 NPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSK 296 ++K++ A + + D+ ++L K ++F D + Sbjct: 213 R--KTKNHEARDIPICDSLYELLNGITPKQ-GYLFPGKIKGTHLD----------KDTMT 259 Query: 297 TSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNH 356 + AG D R HDLRHT+AS L SG L ++++ G I YAHL +H Sbjct: 260 HNIKDCLTEAGFPDMRLHDLRHTFASLLALSGETLQTIRDLLGHSDIRTTEIYAHLTADH 319 Query: 357 LTEHARKI 364 L K+ Sbjct: 320 LKAAVNKL 327 >UniRef50_Q1D2W1 Site-specific recombinase, phage integrase family n=7 Tax=Myxococcales RepID=Q1D2W1_MYXXD Length = 334 Score = 187 bits (476), Expect = 5e-46, Method: Composition-based stats. Identities = 78/311 (25%), Positives = 133/311 (42%), Gaps = 18/311 (5%) Query: 68 EEKADKKSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAA 126 + S+DS + + L F + L +I A+I + M +K+ ++ A+ Sbjct: 16 QLHNKHSSVDSKRQILRDHILPFFGKVALANIGLAEIEDFKAHMRKKKSAAHKRKD-SAS 74 Query: 127 IRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIK-IPAVRNKRVRW 185 R ++ EPKP+S +T L ++ +L AE + + +AP +K + + Sbjct: 75 KRAIRKRQRSEPKPLSLKTINNVLTVLHKLLTLAE-EHGVIRQAPRVKPFGKLPKPPFDF 133 Query: 186 LEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEE----- 240 L EEA +L+ +++++ A+ TGLR+ +I L W + + R + V Sbjct: 134 LSFEEADQLLAVAEPEWRTLLRVAIKTGLRQGELIGLRWHDLTLTRGLLHVRRTIWRGIE 193 Query: 241 --SKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTS 298 K R V L + L + ++VF G KM + Sbjct: 194 GLPKGGRERTVDLPASVVDALNAHRHRRGRFVFCQEDGQPLTKG-------KMAAPLGRA 246 Query: 299 WLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLT 358 +A + +HDLRHT+ S L G+PL V+QE+ G +IEM RYAHL+P+ Sbjct: 247 LRAAGITREVGQIGWHDLRHTYGSHLAMRGIPLKVIQELIGHATIEMTNRYAHLSPDTRR 306 Query: 359 EHARKIDDIFG 369 E +D Sbjct: 307 EAVAVLDRPLA 317 >UniRef50_B3E8B2 Integrase family protein n=1 Tax=Geobacter lovleyi SZ RepID=B3E8B2_GEOLS Length = 421 Score = 187 bits (476), Expect = 5e-46, Method: Composition-based stats. Identities = 94/405 (23%), Positives = 159/405 (39%), Gaps = 87/405 (21%) Query: 8 EIWYASYSLPGGKRIKESLGT---KDKRQAQELHDKRKAEL-----WRVEKLGDLPDVTF 59 + + Y LPGGK+ + +G QA++ +K + +VEK TF Sbjct: 52 KTYLVRYRLPGGKQSRIIIGRHTLYTPAQARDKAEKILRNIKDGINPKVEKQHPKVSHTF 111 Query: 60 EEACLRWLE--EKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKE 117 + +A +K + R++ F + L +I+ + Sbjct: 112 KSFLEDEYSPWAEAQRKDGKATVKRLKSRFSDFLELPLTEITPLIVDKW----------- 160 Query: 118 IWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPA 177 R G+ P T + L IKA L A +W+ LE P+ K+ Sbjct: 161 ----------RTGRLKDSKRP-----ATCNRDLTAIKAFLSKAV-EWEHLEHHPLAKVKP 204 Query: 178 VRN---KRVRWLEKEEAKRLIDEC----------------------------------PE 200 ++ +VR+L +E KRL+ + Sbjct: 205 LKVDSVAKVRFLSADEEKRLLKALDDREEVARAERATANLWRKERGYPLYTDLNSVSFAD 264 Query: 201 PLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLR 260 LK ++ +L TG+R + +L W +DM++ + V +++KS + V LN A L+ Sbjct: 265 HLKPMILVSLNTGIRWGELASLAWDSVDMKKALVTVIGDKAKSGKTRHVPLNSIALNALK 324 Query: 261 DQIGKHH-KWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHT 319 D + VF K D + SW + A I++FR+HD+RH Sbjct: 325 DWKKQSSGDVVFPGRDGKKTLD------------NVNKSWKAVLDAAQIKNFRWHDMRHH 372 Query: 320 WASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKI 364 +ASWL+ +GV L+ ++E+ G ++M RYAHLAP H + Sbjct: 373 FASWLVMAGVDLNTVRELLGHSDLKMTLRYAHLAPEHKAAAVGLL 417 >UniRef50_C6E4Z2 Integrase family protein n=2 Tax=Geobacter RepID=C6E4Z2_GEOSM Length = 334 Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats. Identities = 76/381 (19%), Positives = 157/381 (41%), Gaps = 64/381 (16%) Query: 1 MSLFRRNE--IWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 M++++R ++Y ++++ G R+ S G K++A+ K + L Sbjct: 1 MAVYKRGGKGVFYMNFTV-DGVRVSRSTGKFTKKEAKLFEAVEKKRMMVDGALSP----- 54 Query: 59 FEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEI 118 E R L A +K D E W ++ +G + + I+E +Y + + +I Sbjct: 55 -RERAARMLLSVAIQKVYD------ERWKDNKDGDKSQRIAERVMYL----IGDVPISKI 103 Query: 119 WKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAV 178 ++ ++ +R + E V T ++LA +K +LR + W+ + ++ Sbjct: 104 DEETIKLLVR------LLEGSGVKGATVNRYLATVKTLLRYHRQPWEHI------QLKKE 151 Query: 179 RNKRVRWLEKEEAKRLIDECPE-----------PLKSVVKFALATGLRKSNIINLEWQQI 227 R+R + +EE +++ + + +V+ TG R S ++NL ++ I Sbjct: 152 SKGRIRVISREEEAMVVNLLRDTDHGSRRLYFPEVADLVEVLADTGCRLSEVLNLGYEDI 211 Query: 228 DMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPA 287 + + V +K ++ + + + +L+ R G Sbjct: 212 NFDTNLITVWI--NKGDKPRSIPMTNRVGGILQA-----------------RQVGNPLKP 252 Query: 288 VRKMRIDSKTSWLSACRRAGI---EDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIE 344 +T+W ++ G+ +F H LRHT A+ LI G+ L ++E G +I+ Sbjct: 253 FTIDIDKVETAWKWVRKKMGLAGDPEFVPHALRHTTATRLIDGGIDLYTVKEWLGHSTIQ 312 Query: 345 MVRRYAHLAPNHLTEHARKID 365 + RYAHL P+ L A ++ Sbjct: 313 VTERYAHLNPDKLVHAANVLE 333 >UniRef50_A6VBP4 Site-specific recombinase, phage integrase family n=2 Tax=Pseudomonas RepID=A6VBP4_PSEA7 Length = 404 Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats. Identities = 82/381 (21%), Positives = 153/381 (40%), Gaps = 77/381 (20%) Query: 41 RKAELWRVEKLGDLPDVTFEEACLRWLEEKADKK---------------SLDSDKSRIEF 85 + + LG + +T ++A L++ A+ + + + + I+ Sbjct: 44 LRWARGKKRTLGRVGVLTLDQARKEALQDLAEAREHGEPLAVALGRKNSTTPTLRDFIDD 103 Query: 86 WLEHFEGIRLKDISE--AKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVST 143 + LK S+ I + + +++ EI ++ ++ + + Sbjct: 104 HYSPWMDTHLKSASKTLNLINVGFAEIMSKRLTEITQRDLETLRISWQAAGN------TD 157 Query: 144 QTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRN---KRVRWLEKEEAKRLIDECPE 200 T + +A ++ L A +W +L+ P+ ++ ++ RVR+L +E KRL + Sbjct: 158 STANRKMASLRGALSRAV-EWGFLDDHPMARLKQIKTDRAGRVRYLLPDEEKRLRQAMED 216 Query: 201 ----------------------------------PLKSVVKFALATGLRKSNIINLEWQQ 226 LK +V +L TG+R+ + NL W Sbjct: 217 RQESIRTDRDSANQWRAERKKERLADLREVLFVDHLKPLVLLSLNTGMRRGEVFNLTWAD 276 Query: 227 IDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHK---WVFVHTKAAKRADGT 283 ID+ ++ V E +KS + + LN A + L+ +H + +VF + Sbjct: 277 IDLTNKLVTVEGEGAKSGQTRHIPLNKEALETLKGWRKQHPRNTGYVFPGKDGERLD--- 333 Query: 284 STPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESI 343 + K SW + A + FR+HDLRHT+AS L+ +GVPL+ ++E+ G I Sbjct: 334 ----------NVKKSWEGLLKLANVTGFRWHDLRHTFASKLVMAGVPLNTVRELLGHSDI 383 Query: 344 EMVRRYAHLAPNHLTEHARKI 364 M RYAHLAP+ I Sbjct: 384 TMTLRYAHLAPDSKAAAVELI 404 >UniRef50_B7DTD1 Integrase family protein n=2 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DTD1_9BACL Length = 379 Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats. Identities = 78/394 (19%), Positives = 143/394 (36%), Gaps = 54/394 (13%) Query: 3 LFRRNEIWYASYSL---PGGKRIKE-SLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 + +R W + GKR ++ G K++A++ + E+ + + D T Sbjct: 5 VRKRGNKWCFVIDVGRDENGKRKQKWFSGYATKKEAEKAMAAKLQEIVSGVYVAENND-T 63 Query: 59 FEEACLRWLEEKADKKSLDSDKSR----IEFWLEHFEGIRLKDISEAKIYSAVSRMHNRK 114 E WLE+K + + + + H GI L D+ + + ++ + Sbjct: 64 VETYLRNWLEDKRSQVRPSTYRGYEWLVRVHIIPHLGGIELSDLRPQHLQALYRKLQSLD 123 Query: 115 TKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV-- 172 KP+S +T ++ L A + W + + Sbjct: 124 ------------------------KPLSNRTILHIHLLLHEALDRAVK-WGMVARNVADA 158 Query: 173 IKIPAVRNKRVRWLEKEEAKRLI---DECPEPLKSVVKFALATGLRKSNIINLEWQQIDM 229 + P +R E+ + + +E + A+ TG+RK I+ L W +ID Sbjct: 159 VDPPRPEVRRSIVWTPEDVRAFLSANEEAEARYYAAFVLAVMTGMRKGEILGLRWSEIDW 218 Query: 230 QRRVAWVNPEES-----------KSNR-AIGVALNDTACKVLRDQIGKHHKWVFVHTKAA 277 V +N + K++R VAL+ LR + ++ Sbjct: 219 DSAVVRINQTLTWTKQGPILQEPKTDRSRRSVALSPETIVALRRHHALQAQERLLYGTEY 278 Query: 278 KRADGTSTPAVRKMRI--DSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQ 335 K D + +W A +RA + RFHDLRHT AS L+ GV ++ Sbjct: 279 KDHDLVFARPNGEPLHPRTLDNAWYRALKRANVPRIRFHDLRHTHASLLLAQGVHPKIVS 338 Query: 336 EMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIF 368 E G +I + Y+H+ P + A + D++ Sbjct: 339 ERLGHSTINITLDTYSHVLPGLQKQVADRFDEVI 372 >UniRef50_B1JZG3 Integrase family protein n=1 Tax=Burkholderia cenocepacia MC0-3 RepID=B1JZG3_BURCC Length = 429 Score = 186 bits (473), Expect = 9e-46, Method: Composition-based stats. Identities = 90/399 (22%), Positives = 160/399 (40%), Gaps = 68/399 (17%) Query: 9 IWYASYSLPGGKRIKESLG---TKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLR 65 + ++ P GK+ ++ +G + +A+EL K ++ D T + R Sbjct: 43 TYTVRWTKPDGKQGRKVVGYWPNMNPGEARELARKTIRDV-------DKKGDTTADVLER 95 Query: 66 WLEEKADKKSLDSDKSRIEFWLEHFEGIRLK--DISEAKIYSAVSRMHNRKTKEIWKQKV 123 ++ +++ + L F R + I+ + A R + + Sbjct: 96 ------RRRQVEAQQIVSGHTLRDFIDTRYRVWMIANNRSGEATVTRAVRVFADFLDHPL 149 Query: 124 QAAIRKGKELPVYE--PKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKIPAVR 179 E + K +ST T + LA ++ + A +W + + P+ +K Sbjct: 150 NGFNPWMFESWRAKCLDKGLSTATTNRDLAALRGLFSRAV-EWGVVAEHPMRTVKALKES 208 Query: 180 NKRVRWLEKEEAKRL---IDECPEP-------------------------------LKSV 205 + +VRWL +E RL +D E LK Sbjct: 209 SGKVRWLSDDEEDRLRIALDAREERERSARDSANVWRKARGYELLEDLRTVPFVDYLKPA 268 Query: 206 VKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGK 265 V +L TG+R+ ++ L W ++D++ + V+ E +KS + + LND A L+ + Sbjct: 269 VLLSLNTGMRQGELLKLRWGRVDLENSILTVSDETAKSGKQRHIPLNDEALTALKQWRQQ 328 Query: 266 HHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLI 325 R D +R D KT+W + A I+DFR+HD+RH +AS L+ Sbjct: 329 QS-----------RFDVVFAGDSGAVRTDVKTAWARLLKDAQIQDFRWHDMRHHFASRLV 377 Query: 326 QSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKI 364 +GV L+ ++E+ G + M RYAHLAP H K+ Sbjct: 378 MAGVDLNTVRELLGHSDMTMTLRYAHLAPEHKAAAVAKL 416 >UniRef50_A1AYV5 Phage integrase family protein n=2 Tax=Rhodobacteraceae RepID=A1AYV5_PARDP Length = 356 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 91/360 (25%), Positives = 140/360 (38%), Gaps = 44/360 (12%) Query: 1 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFE 60 + L +R EIWY ++ G+R+ ES DKRQA+ L +R+AE+ G TF Sbjct: 3 LKLIKRGEIWYIRGTVA-GQRVYESTRIGDKRQAEILRARREAEIIERRAYGKAVTYTFA 61 Query: 61 EACLRWLEEKADKKSLDSDKSRIEFWLEHFEGI-RLKDISEAKIYSAVSRMHNRKTKEIW 119 EA L ++E + K + ++HF RL D + A + ++ Sbjct: 62 EAALAYMESGGEGK-------YLARIIKHFGPRWRLVDTDNDAVSRAAAALYPDAG---- 110 Query: 120 KQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAM-IKAILRAAERDWKWLEKAPVIKIPAV 178 T + L I A+ R A D K ++ + Sbjct: 111 -----------------------PATINRQLITPISAVYRLAAEDGKVPDR--RFRRRKE 145 Query: 179 RNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNP 238 R+RWL EE + L+ C L +V F L TG R + L Q + + A+V Sbjct: 146 PRTRLRWLTPEEVEALLAACDRRLLPIVAFLLGTGCRTGEALGLTVQHLHLDTCEAYV-- 203 Query: 239 EESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTS 298 +K+ V +++ VF K S+ + ++ K + Sbjct: 204 GVTKNGDGKMVQYPGRTRRIMVASGLPEAGAVFRTPKGKPYRLTNSSGS--RLGGQIKGA 261 Query: 299 WLSACRRAGI-EDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHL 357 + A AG+ ED H LRHT+A+W L +L E GGW +M Y LAP L Sbjct: 262 FDKARDAAGLGEDVTPHTLRHTFATWHYAVNRDLILLMERGGWRKPDMAIGYTKLAPADL 321 >UniRef50_Q3JF08 Phage integrase n=2 Tax=Nitrosococcus oceani RepID=Q3JF08_NITOC Length = 251 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 70/239 (29%), Positives = 119/239 (49%), Gaps = 24/239 (10%) Query: 142 STQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVR--NKRVRWLEKEEAKRLIDECP 199 S + ++LA + A ++W WLE +P+ +I ++ RVR+L E +RL+ C Sbjct: 27 SPGSVNRYLAALSHTFTIAVKEWGWLEDSPMGRISKLKEPRGRVRFLSDSERERLLKACR 86 Query: 200 EP----LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTA 255 L V AL+TG R+ I+ L W+ +D+QR + ++ E+K+ + L A Sbjct: 87 GSSNSFLYPAVVLALSTGARRMEIMALRWRNVDLQRGLISLH--ETKNGERRALPLAGHA 144 Query: 256 ---CKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFR 312 K L +F ++ +D + W A ++AGIEDFR Sbjct: 145 LDCVKRLSKVRQIDTDLLFPSNHNPQQP------------LDLRKPWEIALKQAGIEDFR 192 Query: 313 FHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKID-DIFGD 370 +HDLRH+ AS+L +G L+ + E+ G ++++MV+RYAH + H ++ IFG+ Sbjct: 193 WHDLRHSAASYLAMNGATLAEIAEVLGHKTLQMVKRYAHFSETHTARVVASMNAKIFGE 251 >UniRef50_D2L4J5 Integrase family protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L4J5_9DELT Length = 296 Score = 186 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 82/289 (28%), Positives = 129/289 (44%), Gaps = 18/289 (6%) Query: 88 EHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYE---PKPVSTQ 144 E + + L I + R +N K + I L K +S Q Sbjct: 9 ELYANLVLSSSPAYCIRTETGRWNNHIVKYFGSTHLVENITNKNLLSFRAALVKKRLSPQ 68 Query: 145 TKAKHLAMIKAILRAAERDWKWLE-KAPVIKIPAVRNKRVRWLEKEEAKRLIDECP---E 200 T L++++ +L A++ W L+ K P +P NKRVR+L K EA L+ E + Sbjct: 69 TITHCLSLLRRVLHRAQQ-WDLLDAKLPNFDMPKFDNKRVRFLTKSEANTLLVELSLKSQ 127 Query: 201 PLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLR 260 + AL TGLR I +L D ++ E+KSNR + LN TA +L+ Sbjct: 128 LWHDISLLALHTGLRAGEIFSLRPSHFDQPNSALYIF--ETKSNRNRSIPLNATARHILK 185 Query: 261 DQIGKHHKWVF-VHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHT 319 +VF H + K + + AV+ + ++ T + FH LRHT Sbjct: 186 ANCAGSTDFVFKEHDRQIKNVNRIFSTAVQTCQFNTPTQDRR-------QRVVFHTLRHT 238 Query: 320 WASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIF 368 +ASWL+Q+G PL V+ ++ G +S++M RYAHLAP + ++ Sbjct: 239 FASWLVQAGTPLIVVSQLLGHKSLQMTSRYAHLAPTQGATAVKALEQFV 287 >UniRef50_B7IY65 DNA integration/recombination/invertion protein n=35 Tax=Bacillus RepID=B7IY65_BACC2 Length = 369 Score = 185 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 76/389 (19%), Positives = 148/389 (38%), Gaps = 46/389 (11%) Query: 3 LFRRNEIWYASYSL-----PGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDV 57 + +R + + G +R K G K K++AQ K+ EL + + V Sbjct: 5 IRKRGNKYCIVIDIGPDPETGKRRQKWFSGYKTKKEAQADVAKKITELNEGTFI-EPSKV 63 Query: 58 TFEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKE 117 T ++ WLE K+ + F +H + + A+ +++ ++ Sbjct: 64 TLKDYLNHWLEIKSMSIQKSTFAGYRAFINQH--------VIPSIGMVALHKLNVMHIQK 115 Query: 118 IWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKI 175 +K + K ++ + ++K+ L A + + + P +I Sbjct: 116 CYKTAIN--------------KGITNNSILLMHRILKSALNLAVKQ-NIISRNPADFAEI 160 Query: 176 PAVRNKRVRWLEKEEAKRLIDECPEPLKSV-VKFALATGLRKSNIINLEWQQIDMQRRVA 234 P ++ +EE K+ + E + A+ TG+R ++ L WQ ID ++ Sbjct: 161 PKKEKTSIQTWTEEEVKKFLAHSQESRYHIGYLLAITTGMRLGEVLGLRWQDIDFEKHTV 220 Query: 235 WVNPEESKSNR----------AIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTS 284 +N N+ + + + L+ +K A D + Sbjct: 221 TINQTSGHDNKIKKTAKTNSSKRTIPVPNETIVALKKHKILINKEKLRFGSAYLDQDLIN 280 Query: 285 TPAVRKM--RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWES 342 ++ R + S++ A + GI++ +FHDLRHT A+ L++ GV ++ E G Sbjct: 281 CNEFGRIIKRAHFRKSFIRATHKVGIKEIKFHDLRHTHATILLKQGVNPKIISERLGHTD 340 Query: 343 IEMVR-RYAHLAPNHLTEHARKIDD-IFG 369 I M Y+H+ PN E + IFG Sbjct: 341 ISMTLSVYSHVLPNMQEEAVKNFGKSIFG 369 >UniRef50_B1M1F6 Integrase family protein n=2 Tax=Methylobacterium RepID=B1M1F6_METRJ Length = 396 Score = 184 bits (468), Expect = 4e-45, Method: Composition-based stats. Identities = 91/402 (22%), Positives = 161/402 (40%), Gaps = 28/402 (6%) Query: 1 MSLFRRNEIWYASYSLP-GGKRIKESLGTKDKRQAQELHDK--RKAELW-RVEKLGDLPD 56 MS+++ Y + GG R + ++R+A+ + RKAE R ++ Sbjct: 1 MSVYKPKGSPYFLFDFQRGGHRFYGTTQETERRRAEAIEQAEIRKAEAQVRRDRRSRGAP 60 Query: 57 VTFEEACLRWLEEKA-DKKSLDSDKSRIEFWLEHFE-GIRLKDISEAKIYSAVSRMHNRK 114 +T + A +R+ E+ + + +E +E L+DI++ + V+R Sbjct: 61 MTIDIAAMRYWNERGMHTATARETERNLERLVEWIGPNTPLQDITDDTLAQLVARRRG-- 118 Query: 115 TKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLA-MIKAILRAAERDWKWL---EKA 170 + KV AA K P+ VS + + +++ +L A + WK E Sbjct: 119 -----QAKVNAARVKRPGKPLGPLGLVSPGQVNRSVTQLLRRVLTRARKAWKVALPDEPN 173 Query: 171 PVIKIPAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQ 230 + +RVR L EE RL + ++ FA TGLR+ + +L W+Q+D Sbjct: 174 WTEHMLTEPRERVRELRHEEESRLEAVERDEYRAPRLFAQITGLRRREVTSLTWRQVDFG 233 Query: 231 RRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRK 290 V V K + + + +L G+H VF + R TS K Sbjct: 234 AEVIRVI---GKGGKGHEIPITPELHLLLWPLRGQHETHVFTYRCQRTRLCPTSKRRFVK 290 Query: 291 MRI------DSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIE 344 +I T +AG+ DFR HDLRHT A+ +++ L ++Q++ S+ Sbjct: 291 GQIYPITYHGFSTHVRRGLEKAGVADFRIHDLRHTSATRTLRATKNLKIVQKLLNHSSLS 350 Query: 345 MVRRYAHLAPNHLTEHARKIDDIFGDNVPNMSHSEIMEDIKK 386 + +YAH + L + I+ + E D + Sbjct: 351 VTEKYAHADLDDLRDAM--IETAADSAARRLKSREKSRDGRH 390 >UniRef50_A8UWI5 Phage integrase n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UWI5_9AQUI Length = 369 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 87/395 (22%), Positives = 146/395 (36%), Gaps = 63/395 (15%) Query: 2 SLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEE 61 S+ ++ +Y + G KR GT KR+A+++ ++ AEL + P+V F Sbjct: 5 SIQKKGRRYYVVIPI-GHKRKWFPAGTT-KREAEKVLAEKLAELNAGSSVLP-PEVRFSF 61 Query: 62 ACLRWLEEKADKKSLDSDKSRIE-----FWLEHFEGIRLKDISEAKIYSAVSRMHNRKTK 116 C WL + A S R E ++ F +L I+ + V+ Sbjct: 62 FCEEWLSKYAKGSVKPSTFRRYEGIIRNHFMPRFGDKKLSRITTGMLQGYVAE------- 114 Query: 117 EIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IK 174 VS T + + ++K + + A+ W +++ P ++ Sbjct: 115 --------------------RLSQVSPTTVLQEVVLLKEMFKHAQS-WGYIKHNPAQNLQ 153 Query: 175 IPAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVA 234 P K + L EE + L++ E + A+ TGLR + L+W ID + Sbjct: 154 RPRREKKEIDILTPEEVEFLLENTHEHYRVAFLTAVMTGLRAGELWGLKWDDIDWHSKQI 213 Query: 235 WVNPE-------ESKSNRAIG-VALNDTACKVLR----DQIGKHHKWVFVHTKAAKRADG 282 +V KS +IG V + D + L+ + VF K Sbjct: 214 YVRRTLWNGEFHTPKSRHSIGKVDMPDVLVEELKLWEIRCPPNKYNLVFPSPKGEPSEHQ 273 Query: 283 TSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWES 342 + A RRAG+ FH LRHT AS I++G + +Q G S Sbjct: 274 NVV----------NRYFKPALRRAGLRVVSFHSLRHTNASIRIRAGQNIKYIQRQLGHAS 323 Query: 343 IEMV-RRYAHLAPNHL--TEHARKIDDIFGDNVPN 374 I Y HL + A+ +D + ++V N Sbjct: 324 INTTLDIYGHLFEDMDFNRSQAQLLDGVLRNSVRN 358 >UniRef50_C0GUW3 Integrase family protein n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GUW3_9DELT Length = 414 Score = 184 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 81/362 (22%), Positives = 153/362 (42%), Gaps = 49/362 (13%) Query: 19 GKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRWL---EEKADKKS 75 K + G + +E+ + R+AE +++K ++ TF ++ + + KS Sbjct: 65 KKAQRTGEGALTLAERREMENVRRAEDIKLKKEQEIASTTFNIIWEKYFLNSQHEKAYKS 124 Query: 76 LDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPV 135 D+++ + W++ F G ++ V+ H K K+ + Sbjct: 125 WDTERHLYKKWIQPFIG--------EVFFTKVTAFHLEKIKKEMRD-------------- 162 Query: 136 YEPKPVSTQTKAKHLAMIKAILRAAERDW--KWLEKAPVIKIPAVRNKRVRWLEKEEAKR 193 +S ++ L++++ + A + ++ ++K+P N+R+R+L EA+ Sbjct: 163 ---ASLSPRSIGYALSVVRQVFCYASDHGIFEGVDPVSLVKMPHYDNRRIRFLTHSEAEI 219 Query: 194 LIDEC---PEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVA 250 L+D + + AL G R I +L WQ ID + + V ++K+ + Sbjct: 220 LLDVLCFSSQNTHDIALIALHCGPRAGEIFSLTWQDIDFSQGL--VTFRDTKNKYVRHIP 277 Query: 251 LNDTACKVL-RDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIE 309 + K+L R + VF +R +K+ + + GI+ Sbjct: 278 ITKRVRKMLERRSDDRSSALVFPDRNGGRR---------KKVSKAFERTIKELGWNKGID 328 Query: 310 DFR----FHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKID 365 D R FH LRHT ASWL+ +GVPL ++E G + I RYAHLAP+ L + ++ Sbjct: 329 DPRQKVVFHTLRHTCASWLVMAGVPLYTVKEYLGHKQISQTERYAHLAPDSLKQATEALN 388 Query: 366 DI 367 I Sbjct: 389 KI 390 >UniRef50_D1C8V1 Integrase family protein n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C8V1_SPHTD Length = 376 Score = 183 bits (465), Expect = 8e-45, Method: Composition-based stats. Identities = 88/388 (22%), Positives = 149/388 (38%), Gaps = 44/388 (11%) Query: 2 SLFRRNEIWY---ASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 S+ R + ++ ++ G +R K G + A +L + + + + + T Sbjct: 11 SIRERPDGYWEARMTFWEQGTRRRKSFYGRTRQEVADKLARALVEQQYGLPVVSERE--T 68 Query: 59 FEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEI 118 ++ RWLE+ A S E + GI + ++ A + ++R+ + + Sbjct: 69 VKDYLERWLEDVA-------RPSLRPRTYESYRGIITRHLTPALGRTRLARLSPDQVQRY 121 Query: 119 WKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVI--KIP 176 QK A +S +T H A+++ L A R W + + P Sbjct: 122 INQKQAA--------------GLSPRTVTYHRAVLRKALNDAMR-WGLVSRNAAALAAPP 166 Query: 177 AVRNKRVRWLEKEEAKRLIDECPEP-LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAW 235 R+L EEA+ +D L+++ ALA GLR+ + L W +D++ Sbjct: 167 KQDRPPARFLTPEEARHFLDTVAGHRLEALFTVALAVGLRQGEALGLRWDDVDLEAGTLT 226 Query: 236 VNPEESKSNRA------------IGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRAD-G 282 V +S A VAL A + LR+ + + + Sbjct: 227 VRYALQRSGGALVLVEPKTQRSRRTVALPAVALRALREHRTRQLEERIAAPYWDDQGFVF 286 Query: 283 TSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWES 342 TST + + AG+ RFHDLRH AS L+ GV V+ E+ G Sbjct: 287 TSTIGTAIDARNLTREFHRLRAEAGLPWLRFHDLRHGCASLLMAQGVNPRVVMEILGHSQ 346 Query: 343 IEMVR-RYAHLAPNHLTEHARKIDDIFG 369 I + Y+H+AP + A KID I G Sbjct: 347 ITLTLGTYSHVAPTLARDAADKIDGILG 374 >UniRef50_A8GE25 Integrase family protein n=18 Tax=Enterobacteriaceae RepID=A8GE25_SERP5 Length = 428 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 80/429 (18%), Positives = 165/429 (38%), Gaps = 66/429 (15%) Query: 7 NEIWYASYSLPGGKRIKESLGT----KDKRQAQEL--------------HDKRKAELWRV 48 + GKR++E+LG K+++ A EL ++KR V Sbjct: 12 GGTLRIWFLFQ-GKRVRENLGIPDTPKNRKAAGELRTSVCYEIKTGNFSYEKRFPNSRNV 70 Query: 49 EKLGDLPDVTFEEACLRWL---EEKADKKSLDSDKSRIEFWLEHFE-GIRLKDISEAKIY 104 ++T + +WL E + K +L S + ++ +I + I Sbjct: 71 TINAARENITVNDIIKKWLNLKEMEVSKGTLYRYTSHCGVTASYLNPERKINEIRQEDIL 130 Query: 105 SAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDW 164 A RM + +K + ++R+G+ +P T ++ ++AI A + Sbjct: 131 LARKRMLTEPQQPKIHEK-RKSVRQGRAVP----------TVNSYMFCMRAIFDFAVSN- 178 Query: 165 KWLEKAPVIKIPAVRNKRV--RWLEKEEAKRLIDECP-EPLKSVVKFALATGLRKSNIIN 221 ++ P + ++ +R L KEE +R+I CP + +++++ A+ TGLR + Sbjct: 179 GYIANNPFEGVSPLKKQRPAPDPLTKEEYQRVIVSCPTQQMRNMITLAINTGLRHGELYA 238 Query: 222 LEWQQIDMQRRVAWV--------NPEESKSNRA-IGVALNDTACKVLRDQIG------KH 266 L W+ +D Q + + K++ + L A + ++ Q+ H Sbjct: 239 LAWEDLDTQNWTISISRNLSLKEHFTLPKTDAGMRTIQLTTVAIEAIKSQMALTRLSNAH 298 Query: 267 HKWVFVHTKAAKRADGTSTPAVRKMRIDS------------KTSWLSACRRAGIEDFRFH 314 V + KR D + ++ + +W + R+AG++ + + Sbjct: 299 RVTVNLREYGKKRTDDCTFIFSPRITSRNGSSADWYSPGAFNGAWKTILRKAGVKHRKSY 358 Query: 315 DLRHTWASWLIQSGVPLSVLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIFGDNVP 373 + RHT+A W + G + + G S +M+ Y + ++ F N P Sbjct: 359 ETRHTFACWALSCGANPNFVAHQMGHSSAQMLYNVYGKWMTENNDHQVNILNASFSQNAP 418 Query: 374 NMSHSEIME 382 + H +I+ Sbjct: 419 QVPHEQIIN 427 >UniRef50_B8FKX9 Integrase family protein n=2 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FKX9_DESAA Length = 408 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 79/373 (21%), Positives = 152/373 (40%), Gaps = 30/373 (8%) Query: 10 WYASYSLPGGKRIKESLGTK--DKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRWL 67 ++ +Y LPGGK+ +E++G D R A+ K E RV K +TFE+ +L Sbjct: 38 YWITYRLPGGKQRREAVGFSIEDARAAEGKRKAEKKENPRVLKKSPEETMTFEDLAKWYL 97 Query: 68 E--EKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQA 125 + KS + + + E F ++K+I+ + + + +K++ + Sbjct: 98 ALPKVKGLKSFWRIEMNLNTFNETFGKTKIKNITALDL----EKFQVDGLAQGFKKRTRG 153 Query: 126 AIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAV------- 178 + + KE + P S + L + + ++ A + +K+ Sbjct: 154 SKEEKKEGGASQ--PASQAYIDQILTVARTMINRAFDSD--IVSGETVKVFRRVKNLQGG 209 Query: 179 -RNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVN 237 N R R L +E +R++ P + V+ A TG+R I L W ++D++ RV + Sbjct: 210 NANARDRVLTHDEFERIMANLPAHARPVIATAYYTGMRSGEIFPLTWDKVDLKERVIRLE 269 Query: 238 PEESKSNRAIGVALNDTACKVLRDQIGK-HHKWVFV-HTKAAKRADGTSTPAVRKMRIDS 295 ++K V + + +VL H VF+ + K+ + + A +K I Sbjct: 270 AADTKDKEPRVVPICNELFEVLSGLPRPIHTNNVFLKKGEPIKKLRNSLSTAAKKANIPF 329 Query: 296 KTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPN 355 + F FHD RHT+ + + ++GVP SV+ ++ G + M RY + + Sbjct: 330 GRKVKN--------GFTFHDFRHTFNTNMRRAGVPESVIMKITGHSTRAMFDRYNTVDAD 381 Query: 356 HLTEHARKIDDIF 368 + Sbjct: 382 DAKNAVNIMSSFL 394 >UniRef50_C6NUL0 Integrase n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NUL0_9GAMM Length = 357 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 89/379 (23%), Positives = 146/379 (38%), Gaps = 70/379 (18%) Query: 10 WYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEK--LGDLPDVTFEEACLRWL 67 W G + + T K +A+ +AE+ R + T E R+ Sbjct: 17 WQVRIRKRGFPQQVRTFRT--KAEAEAWARSIEAEMDRGVWQDRSEAERTTVGELLDRYA 74 Query: 68 EEK-ADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAA 126 E ADKK + SR++ + F + + ++ + I S Sbjct: 75 REVLADKKHCTPELSRLKTLDDAFGRVAVARLTSSAIASFRD------------------ 116 Query: 127 IRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKA--PVIKI--PAVRNKR 182 K KPVS QT + ++ +L+ AER+W P K+ P + R Sbjct: 117 --KRLRDEGRGGKPVSGQTVKHEIGLLHRVLKKAEREWGIALPMGLPTEKVQAPKLPQGR 174 Query: 183 VRWLEKEEAKRLIDEC----PEPLKSVVKFALATGLRKSNII------------------ 220 R L+ E +RL+ C L + +FA+ T +R ++ Sbjct: 175 DRRLQGNEEERLLAACARARNPWLLPLTRFAIETAMRAGEMLETKGTADPETGERPIQTT 234 Query: 221 NLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRA 280 L W+ +D+++R A + +K+ A V L+ A ++LR VF T A Sbjct: 235 GLLWKHVDLKKRTATL--PMTKNGTARVVPLSSVAVEILRGLPRSMDGRVFGTTYEA--- 289 Query: 281 DGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGW 340 S+ AC+RAGIED RFHDLRH S L + + + + G Sbjct: 290 --------------IHLSFTRACKRAGIEDLRFHDLRHEATSRLFERDLNPMQVAAITGH 335 Query: 341 ESIEMVRRYAHLAPNHLTE 359 ++++M++RY HL L Sbjct: 336 KTLQMLKRYTHLRAEDLAR 354 >UniRef50_B2TH09 Integrase family protein n=4 Tax=Proteobacteria RepID=B2TH09_BURPP Length = 380 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 71/310 (22%), Positives = 125/310 (40%), Gaps = 47/310 (15%) Query: 57 VTFEEACLRWLEE-KADKKSLDSDKSRIEFWLEHFEG-IRLKDISEAKIYSAVSRMHNRK 114 ++ +A ++ E +KK +K R + F G + + + I + Sbjct: 11 LSIRQALKKYNERISVNKKGCKQEKYRASTICKTFLGKVPISQATTVDIANYRD------ 64 Query: 115 TKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV-- 172 + + +PVS T LA++ + A +W PV Sbjct: 65 -------------IRLATISRTTNRPVSPNTVRLELALLSDLFNIARIEWGVAVDNPVMR 111 Query: 173 IKIPAVRNKRVRWLEKEEAKRLI----DECPEPLKSVVKFALATGLRKSNIINLEWQQID 228 ++ P + R R L E +R++ E SVV A+ T +R+ I+ L W+ ID Sbjct: 112 VRKPKIPPGRERRLTWGEERRILRGASQHRNEQFYSVVVLAIETAMRQGEILGLTWENID 171 Query: 229 MQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAV 288 ++ R+A + +K+ V L+ A L K VF +T A Sbjct: 172 LRVRIAHLPA--TKNGTKRDVPLSLRAVDALTRLGVKTEGPVFNYTSAG----------- 218 Query: 289 RKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGV-PLSVLQEMGGWESIEMVR 347 K++W + +R G+ D FHDLRH S L + G + + + G +S++M++ Sbjct: 219 ------FKSAWRTLLQRIGMMDLHFHDLRHEAISRLFELGTLDMMEVATISGHKSMQMLK 272 Query: 348 RYAHLAPNHL 357 RY HL ++L Sbjct: 273 RYTHLKASNL 282 >UniRef50_A4TWM2 Phage integrase n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TWM2_9PROT Length = 387 Score = 182 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 78/373 (20%), Positives = 140/373 (37%), Gaps = 56/373 (15%) Query: 7 NEIWYASYSLPGGKRIKESLGTK---DKRQAQELHDKRKAELW-----RVEKLGDLPDVT 58 ++ Y+ P G+ + +G QA+ + +A++ +K T Sbjct: 42 GITFWCKYTDPAGRSREVKIGKAADISVEQARRKAKELRAQVALSGDPAGDKDKHRAVPT 101 Query: 59 FEEAC-LRWLEEKADK-KSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMHNRKT 115 F+ ++L D+ +S +S + + RL +I I R+ + Sbjct: 102 FKAFVTEQYLPFAKDRLRSYSDQESMCRLRLIPTWGAKRLDEIRTTDIVELQRRLRDEN- 160 Query: 116 KEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKI 175 +S T +H+A+ K + A R + + P + Sbjct: 161 -------------------------LSPSTVNRHVALAKRVFNLALRWQAYEGRNPCQHV 195 Query: 176 PAVRN-KRVRWLEKEEAKRLIDECPEP----LKSVVKFALATGLRKSNIINLEWQQIDMQ 230 R +R R+L +E +RL + + + TG RKS +N + ID+ Sbjct: 196 EFAREHQRERFLTPDEMRRLFQALDDEPSRSAANCIALLALTGARKSEALNARFDDIDLP 255 Query: 231 RRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHH-KWVFVHTKAAKRADGTSTPAVR 289 RV V SKS + + L++ A K+L + W+F + + + Sbjct: 256 NRVWTVPASRSKSGKVRRIPLSEAAVKLLVGLPPEPDCPWLFPNAASDGPIE-------- 307 Query: 290 KMRIDSKTSWLSACRRAGIE-DFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRR 348 + + W A + D R HDLRH++AS L+ SG L +Q + G S M R Sbjct: 308 ----NIRRCWNRLKAAATLPSDTRPHDLRHSFASLLVGSGQSLYSVQTILGHASPNMTAR 363 Query: 349 YAHLAPNHLTEHA 361 Y+HL+ L + Sbjct: 364 YSHLSNTSLVDRV 376 >UniRef50_C1DF50 Phage integrase n=4 Tax=Pseudomonadaceae RepID=C1DF50_AZOVD Length = 399 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 82/394 (20%), Positives = 154/394 (39%), Gaps = 49/394 (12%) Query: 2 SLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEE 61 L+ RN IW+ + G+R++ES GT ++ +A++ R +L + G ++ E Sbjct: 8 GLYERNGIWHVD-KVVRGQRLQESTGTGNREEAEQYLIHRLEKLREEKVYGIRRIRSWRE 66 Query: 62 ACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQ 121 A R+L E D S+ + +E + + + + + + + Sbjct: 67 AATRYLVEYKDMPSIGLAATYLEQLDPYIGDLPITHVDDESLAPYI-------------- 112 Query: 122 KVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWK------WLEKAPVI-K 174 + ++ G+ V+ +T L + +L R W+ WL+ P+I K Sbjct: 113 --RDKLKPGRTSTGKVKPGVTPRTVNIALEKVIRVLNLCARKWRDEEKRPWLDTVPMISK 170 Query: 175 IPAVRNKRVRW-LEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQ----IDM 229 + R++R + L EE L E P+ L+ + + + G R+ ++ L W ++ Sbjct: 171 LDEKRSRRTPYPLSWEEQSLLFSELPDHLRRMALYKVNCGSREQEVVKLRWDWEIPVPEL 230 Query: 230 QRRVAWVNPEES--------KSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRAD 281 V + + K+ V LN A V+ Q G WVF + + Sbjct: 231 DTSVFLIPSDFGGRDKGSGVKNGEERLVVLNTVAKSVIEGQRGLDPTWVFPY--GMPDRN 288 Query: 282 GTSTPAVRKMRIDSKTSWLSACRRA----------GIEDFRFHDLRHTWASWLIQSGVPL 331 G +TP R K + + A ++ G R HDL+HT+ L +GV Sbjct: 289 GKATPVHRMNDSAWKKARVRAAKKYQERFLRPAPKGFASIRVHDLKHTFGRRLRAAGVTE 348 Query: 332 SVLQEMGGWESIEMVRRYAHLAPNHLTEHARKID 365 + + G ++ + Y+ L + A KI Sbjct: 349 EDRRALLGHKNGSITSHYSAAELGKLIDEANKIS 382 >UniRef50_A7FCB1 Shufflon-specific DNA recombinase n=2 Tax=Enterobacteriaceae RepID=A7FCB1_YERP3 Length = 375 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 60/254 (23%), Positives = 115/254 (45%), Gaps = 26/254 (10%) Query: 109 RMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLE 168 ++ T I + + + K +S+ T LA++ + + +W Sbjct: 42 KLSTLLTNNITTVDIAEYRDERLKTVKPNGKTISSNTVRLELALLSHLFKVGIVEWGIAR 101 Query: 169 KAPV--IKIPAVRNKRVRWLEKEEAKRLIDECPEP----LKSVVKFALATGLRKSNIINL 222 + PV ++ P R R ++ E +RLI E S++ A+ T +R+ I++L Sbjct: 102 ENPVLLVRKPKASEGRNRRVQPAEHRRLIRYADEHSTGECASIINLAIETAMRQGEILSL 161 Query: 223 EWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADG 282 +W+ +D+++ VA + E+K+ + V L+ A ++LR K VF +T Sbjct: 162 QWEYVDLRQGVAHL--PETKNGTSRDVPLSAKAREILRKCSPKSSGSVFSYTSNG----- 214 Query: 283 TSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSG-VPLSVLQEMGGWE 341 K++W ++GI+D FHDLRH S ++SG + + + + G + Sbjct: 215 ------------FKSAWRCIIIKSGIKDLHFHDLRHEGVSRFVESGRLNIMEVAAISGHK 262 Query: 342 SIEMVRRYAHLAPN 355 S+ M++RY HL + Sbjct: 263 SLSMLKRYTHLKAS 276 >UniRef50_A9D4N1 Putative uncharacterized protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D4N1_9RHIZ Length = 366 Score = 181 bits (458), Expect = 5e-44, Method: Composition-based stats. Identities = 87/385 (22%), Positives = 146/385 (37%), Gaps = 46/385 (11%) Query: 1 MSLFRR--NEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKL---GDLP 55 MS+++R + + +++ G R + G +R+A+ + K E + Sbjct: 1 MSIWKRPGQDTFSYDFTVR-GHRYSGNTGATSRREAERTEARLKDEARAEARARAGQPAR 59 Query: 56 DVTFEEACLR-WLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRK 114 + A R WLE + DS I + HF RL Sbjct: 60 GLRIAAAVSRYWLEAGQHHANADSTLHDIAWLERHFGKNRL------------------- 100 Query: 115 TKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHL-AMIKAILRAAERDWKWLEKAPVI 173 + Q V A + + VS T + A ++AI+ A W E P I Sbjct: 101 LASLTNQDVSAMVAARRAD------GVSPATVNRTATARLRAIITRARDAWD--EPVPRI 152 Query: 174 KIP----AVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDM 229 R + +R L EE L +V+F++ +G R + + LEW+ ID Sbjct: 153 AWKNHLLRERQEVLRELSAEEETALFARLAPGYAELVRFSMLSGCRMAECLGLEWRLIDW 212 Query: 230 QRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVR 289 + K ++ V L+D A + L + + H VF H Sbjct: 213 HGGYIVI---TGKGDKTRHVPLSD-ALRALLWPLPRAHARVFTHRIRRGSIHHKRGDIAP 268 Query: 290 KMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRY 349 + + C++AG+ FRFHDLRHT+A+ +++ + LQ + G SIE RY Sbjct: 269 VEEEALNSHFARVCKKAGVIGFRFHDLRHTFATRFLRATGDMRALQLILGHSSIETTMRY 328 Query: 350 AHLAPNHLTEHARKIDDIFGDNVPN 374 AH+ + R++D + +P Sbjct: 329 AHVTA---ADAKRRMDAMSATKIPT 350 >UniRef50_Q0FPA2 Probable site-specific integrase/recombinase n=2 Tax=Rhodobacterales RepID=Q0FPA2_9RHOB Length = 341 Score = 181 bits (458), Expect = 6e-44, Method: Composition-based stats. Identities = 82/367 (22%), Positives = 146/367 (39%), Gaps = 50/367 (13%) Query: 2 SLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWR---VEKLGDLPDVT 58 ++ RN W+A + G +S KR A+ + +AEL + L VT Sbjct: 3 AIRNRNGKWHAQVRIKGHASQTKS--FTTKRDAERWAKQTEAELQASALRIDIRVLDRVT 60 Query: 59 FEEACLRWLEE-KADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKE 117 + R+ E A K+ S+ RI+ +L + V R ++ T + Sbjct: 61 VRDLLERYRREVTATKRGAASESKRIDGFLR---------------QTWVDRTLSKVTPQ 105 Query: 118 IWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKW-LEKAPV--IK 174 ++ + +R V T + L ++++I A +W L+ P+ ++ Sbjct: 106 VFSRYRDERLR-----------TVRPGTVIRDLGLLRSIFEVARLEWDVPLQNNPLANVR 154 Query: 175 IPAVRNKRVRWLEKEEAKRLIDEC----PEPLKSVVKFALATGLRKSNIINLEWQQIDMQ 230 P + R R L E L+ C + L++ + A+ TG+R+ I+++ W + M Sbjct: 155 KPKAPDPRERRLRPGELDLLLTACQSYRNDWLRAGIVLAIETGMRRGEILSIRWCDVSMD 214 Query: 231 RRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRK 290 + E+K+ A + L A VLRD + V ++ R S A R+ Sbjct: 215 TSTLTIR--ETKNGHARRIPLTAVAVDVLRDMLE-------VCDDSSVRIFPVSANAFRQ 265 Query: 291 MRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYA 350 K ++ IE RFHDLRH S + G+ + + + G M+ RY Sbjct: 266 CWQRCKGKVAEDYKQ--IESLRFHDLRHEAVSRFFEMGLSVPEVALISGHRDPRMLFRYT 323 Query: 351 HLAPNHL 357 HL ++ Sbjct: 324 HLRAENI 330 >UniRef50_B7GVF6 Tyrosine recombinase xerC n=1 Tax=Acinetobacter baumannii AB307-0294 RepID=B7GVF6_ACIB3 Length = 398 Score = 180 bits (457), Expect = 7e-44, Method: Composition-based stats. Identities = 82/380 (21%), Positives = 155/380 (40%), Gaps = 66/380 (17%) Query: 19 GKRIKESLGTKDKRQAQELHDKRKAELWRVEKL----------GDLPDVTFEEACLRWLE 68 GK+I +SLGT + +K +++ R + P T E L Sbjct: 53 GKKISKSLGTFSHADFDQNLEKLISQMQRFHQRIAQGLAPFEDEVKPANTLREFALTIYM 112 Query: 69 EKAD--KKSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQA 125 A+ KKS D++++ L +DI+ + ++ + + Sbjct: 113 PSAEMRKKSYKDDEAKLRMHILPVIGDYPFEDINAGMLNKLLTELRS------------- 159 Query: 126 AIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVR--NKRV 183 K ++ + + A++ + A ++ PV K+ + N+ Sbjct: 160 -------------KGLTNASINRVRALLSVMFNMAIN-HDLIQVNPVSKVSKFKENNQIE 205 Query: 184 RWLEKEEAKRLIDECPEPLK---------SVVKFALATGLRKSNIINLEWQQIDMQRRVA 234 R+L +E KRL+D P + ++VKF L TG+RK ++++W +D+ V Sbjct: 206 RYLNAQEIKRLMDVLNAPHQHGIDNLIIVAIVKFLLLTGVRKREAMDMKWTDVDLTTGVW 265 Query: 235 WVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRID 294 + E+KS +A + LN A +L + + H ++F + + + D Sbjct: 266 LL--GENKSGKARRITLNQDALAILHS-LPQQHAFIFANPMTGQPFN------------D 310 Query: 295 SKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAP 354 + ++ S + A I + R HDLRH +AS + SG L V+Q + G S + +RYAHL Sbjct: 311 MRKTFQSIMKAASIRNIRIHDLRHNFASIAVNSGQSLYVVQHLLGHASPQTTQRYAHLQS 370 Query: 355 NHLTEHARKIDDIFGDNVPN 374 + L + + + + Sbjct: 371 STLKQASEDVAAAIRAQSSH 390 >UniRef50_B0UQB2 Integrase family protein n=5 Tax=Rhizobiales RepID=B0UQB2_METS4 Length = 338 Score = 180 bits (457), Expect = 7e-44, Method: Composition-based stats. Identities = 86/375 (22%), Positives = 150/375 (40%), Gaps = 55/375 (14%) Query: 2 SLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPD-VTFE 60 ++ +R W A G + S TK + A +R+ E + P +T Sbjct: 3 TIRKRGTSWQAQVRRDGFPPLSRSFRTKAEAVAWGRDREREIEGGSLSVATREPKGLTVA 62 Query: 61 EACLRWLEEKA-DKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIW 119 E R+ + K+ S++SRI H I +A++ + M R + Sbjct: 63 EILRRYQAAVSCKKRGARSERSRIGTLQAH-------PIGQAQVRRLSASMVARYRDDRL 115 Query: 120 KQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKW-LEKAPV--IKIP 176 + V+ + + L +++ L A R+W L PV IK+P Sbjct: 116 EI-------------------VAGDSVRRELTILRHCLEVARREWGIPLPSNPVGQIKLP 156 Query: 177 AVRNKRVRWLEKEEAKRLIDECPE----PLKSVVKFALATGLRKSNIINLEWQQIDMQRR 232 R + LE E+A+ LI L+ +V A+ TG+R+ ++ L W +D+ R Sbjct: 157 EPSKGRQQRLEAEQAQALILALKRSRVWYLRPLVNLAIETGMRRGELLTLRWANVDLSSR 216 Query: 233 VAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMR 292 +A++ E +K+ + + L+ A VL+ + + VF T A R Sbjct: 217 IAYL--ETTKNGHSRTIPLSPGALSVLKG-LPRTDARVFPLTGNAVR------------- 260 Query: 293 IDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHL 352 +W RAG+ + RFHDLRH S + G+ + + + G + RY HL Sbjct: 261 ----LAWERLRNRAGLPELRFHDLRHEAISRFFEIGLSIPEVALISGHRDTRTLMRYTHL 316 Query: 353 APNHLTEHARKIDDI 367 P L + ++ D+ Sbjct: 317 RPEVLAKKLQQARDV 331 >UniRef50_B1JDB3 Integrase family protein n=3 Tax=root RepID=B1JDB3_PSEPW Length = 340 Score = 180 bits (456), Expect = 8e-44, Method: Composition-based stats. Identities = 77/369 (20%), Positives = 141/369 (38%), Gaps = 57/369 (15%) Query: 1 MSLF-RRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVE--KLGDLPDV 57 M+ + +R + W A G + S K +AQ + + ++ R + + Sbjct: 16 MAYYEKRGDAWRAQIRRKGYPTL--SATFDTKAEAQRWAAEIEGDMSRARFVDMREAEST 73 Query: 58 TFEEACLRWLEE-KADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTK 116 T +EA R+L E + KK ++ RI+ W EH ++ ++ Sbjct: 74 TLDEALDRYLSEVTSTKKGAKQEQVRIKKWKEH-------------------KLASKGLA 114 Query: 117 EIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWK---WLEKAPVI 173 I + A + ST T +LA+I + A ++W I Sbjct: 115 AIRSSDMAAYRDAELKEGK------STATVRLNLAVISHLFTVATKEWGIEGLTNPCRAI 168 Query: 174 KIPAVRNKRVRWLEKEEAKRLIDECPE---PLKSVVKFALATGLRKSNIINLEWQQIDMQ 230 ++P +R R E L + L ++ A+ T +R+S ++ L + + Sbjct: 169 RMPKGSKERDRRPTPAELTALYKAAGQMNAQLPVFIELAVETAMRRSELLMLRRDHV--R 226 Query: 231 RRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRK 290 +VA++ E++K+ V L+ A +L R + + Sbjct: 227 GKVAYL--EDTKNGERRAVPLSSRAIALLEG---------LPTPIGGGRYFNLALNTI-- 273 Query: 291 MRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYA 350 + AC AGIE R HDLRH S + G + + + G +++ M++RY Sbjct: 274 -----SNYFPRACAAAGIEGLRLHDLRHEATSRFFERGFTMMEVASITGHKTLAMLKRYT 328 Query: 351 HLAPNHLTE 359 HL+P+ L E Sbjct: 329 HLSPHDLAE 337 >UniRef50_B7I3I8 Integrase n=4 Tax=Acinetobacter baumannii RepID=B7I3I8_ACIB5 Length = 328 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 87/379 (22%), Positives = 153/379 (40%), Gaps = 65/379 (17%) Query: 1 MSLFR-RNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTF 59 M+ FR RN W A S+ G I+ES K QA+ KR+ +L R + G LPD +F Sbjct: 1 MASFRQRNNTWRAEISVNG---IRESSTFDTKAQARAWASKRETQL-REQSHGKLPDHSF 56 Query: 60 EEACLRWLEE-KADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEI 118 EA R+L E KK+ +++ R+ F+ ++ + K +++ V +R Sbjct: 57 LEAIERYLSEVSVKKKTHENEVKRMAFFKREYKKLCQKQLAKVTTDDLVQWRDSRL---- 112 Query: 119 WKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKIP 176 K V T + ++ ++ A ++WKW++++P+ + +P Sbjct: 113 --------------------KEVQGATVRREANILASLFTVARKEWKWIKESPMADLTLP 152 Query: 177 AVRNKRVRWLEKEEAKRLIDECP----------EPLKSVVKFALATGLRKSNIINLEWQQ 226 R R + ++E RL + + FA+ T +R I+ L W + Sbjct: 153 PPSKHRDRRIAQDEIDRLCLAANWDNNVPVNSTQQIIIAFLFAIETAMRAGEIVGLTWDR 212 Query: 227 IDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTP 286 + ++ R +N E+K+ V L+ A ++L G K VF + Sbjct: 213 VYLKDRYLVLN--ETKNGTKRNVPLSKRAVELLTLLKGLDKKQVFTCNSQS--------- 261 Query: 287 AVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMV 346 T W R I D FHD RH + L + + + L M G + + + Sbjct: 262 --------FDTLWRKLRDRCQITDLHFHDTRHEACTRLARK-LEVLDLARMIGHKDLRSL 312 Query: 347 RRYAHLAPNHLTEHARKID 365 Y + + E A ++D Sbjct: 313 MVYYNATAS---EIATRLD 328 >UniRef50_Q1MRZ7 Prophage DLP12 integrase (Fragment) n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MRZ7_LAWIP Length = 388 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 90/378 (23%), Positives = 163/378 (43%), Gaps = 41/378 (10%) Query: 8 EIWYASYSLPGGKRIKESLGT---KDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACL 64 +++Y + GK I+E +G D A+ + ++EL ++ + EEA Sbjct: 37 KVYYVVFK-KNGKVIEEKVGRQFIDDMTPAK--ASRIRSELIEGKR--KTKKLAKEEALA 91 Query: 65 RWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQ 124 L + W E+ +G ++ + + N + ++ Sbjct: 92 ASLRKNIHG-----------IWEEYAKGRPKNKNTDIDLCRYELHLKNIFGHKFPEEITT 140 Query: 125 AAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAP---VIKIPAVRNK 181 +R K+ + K S QT LA+++ ILR E++ V ++P V N Sbjct: 141 NDVRIFKDNLIQSGK--SPQTVLNTLALLRRILRFGEKNGFCTLPDRSQLVFEMPKVDNI 198 Query: 182 RVRWLEKEEAKRLIDECPEP----LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVN 237 + L + + K L++ + S ++ AL TG+RK ++ LEW +D ++ + + Sbjct: 199 KTENLTETQLKALMEALDAETDQVMASCLRLALVTGMRKGALLALEWTDLDFEQGIITLQ 258 Query: 238 PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKT 297 + +K + + ++ A K++ +++ ++VF +TK KR+D S P K + Sbjct: 259 GKSAKKGKTAYIPMS-EAAKIILEKLPHTSRYVFPNTKGEKRSDFRSMPNRIKQKAQLPA 317 Query: 298 SWLSACRRAGIEDFRFHDLRHTWASWLIQSG-VPLSVLQEMGGWESIEMVRRYAHLAPNH 356 + FH LRHT+AS L SG V L LQ++ S +M +RYAHLA Sbjct: 318 DFRP-----------FHGLRHTYASHLASSGKVDLYTLQKLLTHSSPQMTQRYAHLADEA 366 Query: 357 LTEHARKIDDIFGDNVPN 374 + AR DDI N+ Sbjct: 367 MKRAARVADDILTSNMEK 384 >UniRef50_C4XTG1 Site-specific recombinase n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XTG1_DESMR Length = 409 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 81/362 (22%), Positives = 142/362 (39%), Gaps = 51/362 (14%) Query: 20 KRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRWLEE-KADKKSLDS 78 + I+ G Q L D +A + + +TF E R+L+ K +K S Sbjct: 66 QNIRRGTGP------QSLRDMARAARGEADA-AEAAPLTFGELARRYLDWAKRNKSSWKE 118 Query: 79 DKSRI-EFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYE 137 D+ + + L F ++ + + Sbjct: 119 DEYLLAKRVLPLFAHRPATSLTRTDTEQFRDAL-------------------------LD 153 Query: 138 PKPVSTQTKAKHLAMIKAILRAAER--------DWKWLEKAPV--IKIPAVRNKRVRWLE 187 +S T HL +I+ + A + + PV I++P V N+R+R+L Sbjct: 154 AGGLSPMTIKHHLVVIRRVYNWAASTPVADDPGHMLFEGRNPVSGIRMPLVDNERIRFLT 213 Query: 188 KEEAKRLIDECPEPL---KSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSN 244 +EEA RL++ E L ++ AL TG+R+ I+ L WQ +D+ R+ + +++ Sbjct: 214 REEADRLLEAAGERLPEMHDIILLALLTGMRRQEILGLMWQDVDLVNRIISIPARLTRAK 273 Query: 245 RAIGVALNDTACKVLRDQIGK-HHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSAC 303 R+ L++ +L+ + +VF +R T + + Sbjct: 274 RSRKAFLDEETAAMLQARREHAQSPFVFPGAVDGRRDPDHVTRQFDALVNGIGLNNGVTD 333 Query: 304 RRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARK 363 + FH LRHT+ASWL Q+G + L E+ G +SI ++RYAHL P A Sbjct: 334 PKH---KVVFHTLRHTFASWLAQAGADIHHLMELTGHKSISTMQRYAHLMPGKTRAIASL 390 Query: 364 ID 365 + Sbjct: 391 VS 392 >UniRef50_Q0K8W4 Phage integrase family protein n=1 Tax=Ralstonia eutropha H16 RepID=Q0K8W4_RALEH Length = 348 Score = 179 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 91/380 (23%), Positives = 148/380 (38%), Gaps = 61/380 (16%) Query: 2 SLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVE--KLGDLPDVTF 59 S+++R + W + G + K A+ + + E+ R + T Sbjct: 3 SIWKRGDYWRVAIRKRGYPPQART--FDTKADAESWARQVEVEMDRGSFVDRREAERNTL 60 Query: 60 EEACLRWLEE-KADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEI 118 + LR+ EE KK + + RI +R I+ KI + Sbjct: 61 GDLLLRYSEEISPHKKGGEQEVLRIR-------KLRSDPIAHYKIAAL------------ 101 Query: 119 WKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKW---LEKAPVIKI 175 KV AA R + E +PVS T + L +I +L A ++W + I+ Sbjct: 102 -TGKVLAAYRDRRLKGDGERRPVSGSTVNRELTLISHVLNVANKEWDIHLAINPVSTIRR 160 Query: 176 PAVRNKRVRWLEKEEAKRLIDEC-----------------PEPLKSVVKFALATGLRKSN 218 P R R L E RL E + + AL T +R+ Sbjct: 161 PRESRGRTRRLGAAEEARLFAELSASPRNGRGHYDKGGSRNPSILPLTILALETAMRRGE 220 Query: 219 IINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAK 278 +++L W + ++ R +V +SK+ + V L+ A L + T A+ Sbjct: 221 LLSLRWSDVFLEDR--FVRLHDSKNGESRDVPLSTKAVSTLAPLAE-------LATSASD 271 Query: 279 RADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMG 338 R TS AV+K ++ AC RAGIE+FRFHDLRH S + + + L + Sbjct: 272 RVFPTSADAVKK-------AFTRACERAGIENFRFHDLRHEGTSRIAERLDNVLELSAVT 324 Query: 339 GWESIEMVRRYAHLAPNHLT 358 G ++++M+RRY H L Sbjct: 325 GHKTLQMLRRYYHPRAKDLA 344 >UniRef50_A6FXR9 Phage integrase n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6FXR9_9DELT Length = 421 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 93/385 (24%), Positives = 145/385 (37%), Gaps = 48/385 (12%) Query: 12 ASYSLPGG--KRIKESLGTKDKRQAQELHDKRKAELWR---------------VEKLGDL 54 LP G KR+++ + KR AQ + +AEL K Sbjct: 4 VCIKLPDGRTKRVRKVSPVQTKRAAQAFERETRAELMAGLFDEENNHGPNGSGRRKAKPQ 63 Query: 55 PDVTFEEACLRWLEEKA---DKKSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRM 110 T E ++ +A L S +S ++ L F +RL I A+ R Sbjct: 64 AVPTLAEFAPEFMAYQATLNKATELASKRSSLKNHLLPVFGDLRLDQIDA----RAIDRY 119 Query: 111 HNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKA 170 RK V + R+ E + +T HL ++ LR A++ W L++ Sbjct: 120 KMRKLSPEHAATVASTRRRAGE-------GLKPKTINNHLMVLSRALRVAQK-WGVLDRV 171 Query: 171 PVIKIPAVRNKRVRWLEKEEAKRLIDECPEPLKS---VVKFALATGLRKSNIINLEWQQI 227 P I++ V + +L+ EEA+R + E V A TGLR ++ L+W+ + Sbjct: 172 PEIELLRVTKQPFDFLDFEEAERYLAAAREHYPDWHVFVLVAARTGLRVGELLALQWKHV 231 Query: 228 DMQRRVAWVNPEES--------KSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKR 279 + R V + KS +A V L + L H + + +A Sbjct: 232 RLAGRTLRVELSYTRAGGVSSPKSGKAREVPLTWDVARALE----VHREVLGAKARARDA 287 Query: 280 ADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGG 339 + R + A + H LRHT+AS + GVP+ V+QE G Sbjct: 288 LVFPNADGERGSLRSVGHFVSRIAKAAKLRHVHPHMLRHTFASHAVMRGVPMRVVQEWLG 347 Query: 340 WESIEMVRRYAHLAPNHLTEHARKI 364 SIEM RYAHLA + +I Sbjct: 348 HASIEMTMRYAHLAEGIGLDLIDRI 372 >UniRef50_A9AEX0 Tyrosine recombinase n=1 Tax=Burkholderia multivorans ATCC 17616 RepID=A9AEX0_BURM1 Length = 328 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 83/374 (22%), Positives = 145/374 (38%), Gaps = 64/374 (17%) Query: 1 MSLF-RRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDL--PDV 57 M+ F +RN W + G S T K + Q + + + DV Sbjct: 1 MATFSQRNGRWQVKINRKGFPTQYRSFAT--KAEGQVWARSVETAMDDGTWVDPAGTTDV 58 Query: 58 TFEEACLRWLEE-KADKKSLDSDKSRIEFWLEH-FEGIRLKDISEAKIYSAVSRMHNRKT 115 TF + R+ E K+S S++ RI L H +++++ + + + Sbjct: 59 TFGKLLERYRESITPTKRSRRSEEYRIGKMLRHKIAEYSMRNLTASLVADYRDQ------ 112 Query: 116 KEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--I 173 K + + LA I A++ A+R+W P + Sbjct: 113 ---------------------RLKVATNSCVCRELATISAVITHAQREWGLSITNPAKLV 151 Query: 174 KIPAVRNKRVRWLEKEEAKRLIDEC--------PEPLKSVVKFALATGLRKSNIINLEWQ 225 K P + R R L+ E RL+ E L + K AL T +R+ +++LEW+ Sbjct: 152 KKPRLPPGRNRILKPAELDRLLHELHAERHELRSRWLLPLAKLALETAMRQGELLSLEWR 211 Query: 226 QIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTST 285 +D +R A++ +K+ + V L+ A +L +R D Sbjct: 212 HVDFDQRTAYL--PMTKNGKDRHVPLSSAAIAILESL---------------ERIDERVI 254 Query: 286 PAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEM 345 P + + + +W AC+RA IE+F FHDLRH + L + + L + G +++M Sbjct: 255 PITQNVVL---CAWPRACKRAAIENFHFHDLRHMATTNLAKKLPNVIELASVTGHSNVQM 311 Query: 346 VRRYAHLAPNHLTE 359 + RY H + L Sbjct: 312 LSRYYHTSAGELAR 325 >UniRef50_A5IH69 Site specific recombinase n=2 Tax=Legionella pneumophila RepID=A5IH69_LEGPC Length = 407 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 87/371 (23%), Positives = 154/371 (41%), Gaps = 70/371 (18%) Query: 47 RVEKLGDLPDVTFEEACLRWLE---------EKADKKSLDSDKSRIEFWLEHFEGIRLK- 96 + LG + +T +A + +E E +K ++ K+ EF ++ L Sbjct: 50 KKINLGTVGVMTAAQAREKAIEVLSNANKGIEPTAQKGINKPKTLQEFIESDYKPWVLST 109 Query: 97 ----DISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAM 152 + A + ++ EI V+ K S T ++++M Sbjct: 110 HKRGQETLAGLIRCYKAFFSKPLGEITPALVEQWRVKRLNEGT------SQATLNRNISM 163 Query: 153 IKAILRAAERDWKWLEKAPVIKIPAV---RNKRVRWLEKEEAKRLIDECPEP-------- 201 +K+++ A +W +L++ + K+ R+ ++R+L E RL + E Sbjct: 164 LKSLMTKAV-EWGFLKENALGKLKPYKIDRSPKIRYLSFAEEARLREALIERDNQLRLMR 222 Query: 202 --------------------------LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAW 235 L +V ++ TGLR+ + +L W +++ Sbjct: 223 KNGNLWREKRGYDLLPELSEDNACDYLMPMVLLSINTGLRRGELFHLTWDMVNLSEGSLI 282 Query: 236 VNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDS 295 ++ E +K+ + + LND A K+L + K A+R +G P+ + Sbjct: 283 LSGEITKNKHSRYIPLNDEAYKILDNLHKK-----------AERKEGLVFPSKNNQPFNH 331 Query: 296 -KTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAP 354 K SW S ++A I FR+HDLRH +AS L+ +GV L+ ++E+ G I M RYAHLAP Sbjct: 332 VKRSWGSLLKKANITQFRWHDLRHHFASKLVMAGVDLNTVRELLGHSDIAMTLRYAHLAP 391 Query: 355 NHLTEHARKID 365 H RKID Sbjct: 392 EHKVNAVRKID 402 >UniRef50_Q2RHJ2 Phage integrase n=3 Tax=Firmicutes RepID=Q2RHJ2_MOOTA Length = 390 Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats. Identities = 85/398 (21%), Positives = 157/398 (39%), Gaps = 63/398 (15%) Query: 2 SLFRR-NEIWYASYSL---PGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLG--DLP 55 ++++R + W A ++ GK+ + +L K K+ E+ +K L++ + G + Sbjct: 11 TVYQRPDGRWTAQITVGIDHEGKQRRLTLYGKSKK---EVLEKLTQALYQQQNGGFIEPS 67 Query: 56 DVTFEEACLRWLEEKAD----KKSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRM 110 +T E+ RWL + A + + +S ++ + + I LK + A I R+ Sbjct: 68 KITVEQWLNRWLTDYAKPHLRQSTWESYETVLRLHVIPTLGSIPLKKLQPADI----QRL 123 Query: 111 HNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKA 170 + K + +S ++ + A R+ L + Sbjct: 124 YASKLES----------------------GLSPTRVRYIHVVLHEAMSQA-RESGLLLQN 160 Query: 171 P--VIKIPAVRNKRVRWLEKEEAKRLIDECP-EPLKSVVKFALATGLRKSNIINLEWQQI 227 P K P K+V+ L E+ KR ++ +PL AL TGLR+ I+ L WQ + Sbjct: 161 PTEAAKPPRHPKKKVQPLNPEQVKRFLETAKQDPLYPAFLLALGTGLRRGEILGLRWQDL 220 Query: 228 DMQRRVAWVN--------------PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVH 273 D+Q+ + V P+ KS R + L + L+ ++ + Sbjct: 221 DLQKGILQVRQSLIRTREGLKFEEPKTEKSRRQ--IPLPPSVVAALKRHKAWVNQNKLIL 278 Query: 274 TKAAKRADGTSTPAVRKMR--IDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPL 331 + D + R + +AG+ R HDLRHT A+ L+ GV Sbjct: 279 GPDYEDHDLVFPVENGRPRDPKGFAEYFNRLLDKAGLPHIRLHDLRHTHATLLLLEGVHP 338 Query: 332 SVLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIF 368 V+QE G ++ + Y+H+ P + A +ID + Sbjct: 339 KVVQERLGHSTVSITLDIYSHILPGLQEKAAERIDGLL 376 >UniRef50_Q1AUQ4 Phage integrase n=3 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AUQ4_RUBXD Length = 379 Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats. Identities = 74/396 (18%), Positives = 156/396 (39%), Gaps = 61/396 (15%) Query: 5 RRNEIW---YASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEE 61 R+N W Y Y+ G R ++++ K + + + +K ++ D ++ E Sbjct: 14 RKNGGWMGQYVVYTAEG--RKRKTVYGKTRAEVAKKLNKALSDREDGLFF-DAGNLKVGE 70 Query: 62 ACLRWLEEKAD----KKSLDSDKSRIEFWLEH-FEGIRLKDISEAKIYSAVSRMHNRKTK 116 RWL + + ++L + K ++ ++ I+LK ++ A + Sbjct: 71 YMDRWLRDSVEGNVGPRTLANYKLQVRRHIKPVLGEIQLKTLTPAHVQG----------- 119 Query: 117 EIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAP--VIK 174 +++QK+ A ++ + A++ L A R W + + + Sbjct: 120 -LYRQKLDA--------------GLAPSSVRYIHAVLHRALTQALR-WGLVPRNVSEAVD 163 Query: 175 IPAVRNKRVRWLEKEEAKRLIDECP-EPLKSVVKFALATGLRKSNIINLEWQQIDMQRRV 233 +P + ++ V L EEA++ +D + +++ A+ TG+R+ ++ L W ID+ + Sbjct: 164 LPKLVSEEVDALTPEEARKFLDAARGDRFEALYVVAVMTGMRRGELLGLRWSDIDLGQNA 223 Query: 234 -AWVNPEE---------------SKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAA 277 A + K + + L A + L+ + + Sbjct: 224 PATLRVGRQLQRMRDGSGLKFVAPKGGKGRTIRLPSRAVEALKAHRARQAEERLKAGPLY 283 Query: 278 KRADGTSTPAVR---KMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVL 334 + V + + S+ ++AG+ D RFHDLRHT A+ L+ GV + Sbjct: 284 RDEGLVFASEVGTPLEPSNIDRRSFKPLLKKAGLPDIRFHDLRHTCATVLLSQGVNPKFV 343 Query: 335 QEMGGWESIEMVR-RYAHLAPNHLTEHARKIDDIFG 369 QE+ G I++ Y+H P+ + A ++ G Sbjct: 344 QELLGHADIKLTLGTYSHFLPSMGDQTANAMESALG 379 >UniRef50_C3L682 Prophage LambdaBa04, site-specific recombinase, phage integrase family n=10 Tax=Bacillus anthracis RepID=C3L682_BACAC Length = 374 Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats. Identities = 74/402 (18%), Positives = 148/402 (36%), Gaps = 60/402 (14%) Query: 1 MSLF--RRNEIWYASYSL----PGGKRIKESL-GTKDKRQAQELHDKRKAELWRVEKLGD 53 M + +R E W + + GKR +++ G K K++A+ ++ + + L D Sbjct: 1 MKGYFRKRGEKWSFTIDIGKDPITGKRKQKTASGFKTKKEAERACNELIHQ-FNTGSLVD 59 Query: 54 LPDVTFEEACLRWLEEKADKKSLDSDKSRIEF-----WLEHFEGIRLKDISEAKIYSAVS 108 + T E WLE A ++ ++ + + + +LKD+ V Sbjct: 60 DKNFTLSEYLQEWLENTAKQRVRETTFTNYKRAINSRIIPVLGSHKLKDLKPLHGQRFVK 119 Query: 109 RMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLE 168 + + +S ++K L A R W+ L Sbjct: 120 SLIDE--------------------------GLSPAYIEYIFIVLKGSLEDAVR-WELLF 152 Query: 169 KAPV--IKIPAVRNKRVRWLEKEEAKRLIDECPEP---LKSVVKFALATGLRKSNIINLE 223 K P ++IP R EE K+ ++ + AL TG+R+ I+ L+ Sbjct: 153 KNPFQHVEIPRPRKVVNSTWSIEETKKFLNRTKFENVIYYHLFLLALNTGMRRGEILGLK 212 Query: 224 WQQIDMQRRVAWV-----------NPEESKS-NRAIGVALNDTACKVLRDQIGKHHKWVF 271 W+ D+ V E K+ ++++ CK + K +++ Sbjct: 213 WKNFDLNEGKISVTETLIYDENGFRFTEPKTHGSKRLISIDQNLCKEFKSYKAKQNEFKL 272 Query: 272 VHTKAAKRADGTSTPAVRK--MRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGV 329 + ++ + D + + T++ ++A + RFHDLRHT A+ L++ G+ Sbjct: 273 LFGQSYEDNDLVFAKETGQPILPRTMTTTFNQFIKKADVPQIRFHDLRHTHATILLKLGI 332 Query: 330 PLSVLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIFGD 370 ++ E G SI+ Y+H+ + K+ + Sbjct: 333 NPKIVSERLGHSSIKTTLDTYSHVTIDMQESAVLKLSEALKS 374 >UniRef50_A4ILC8 DNA integration/recombination/invertion protein n=1 Tax=Geobacillus thermodenitrificans NG80-2 RepID=A4ILC8_GEOTN Length = 387 Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats. Identities = 79/404 (19%), Positives = 148/404 (36%), Gaps = 57/404 (14%) Query: 2 SLFRRNEIWYASYSLPG----GKRIKESLGT--KDKRQAQELHDKRKAELWRVEKLGDLP 55 S+ +R + Y G GKRIK + K K++A++ K AE+ E + Sbjct: 4 SIEKRGKNSYRLVYSMGFDANGKRIKRTKTVHVKTKKEAEKELAKFIAEIEAGEYIKPA- 62 Query: 56 DVTFEEACLRWLEEKADK----KSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRM 110 ++ + W + A+K K+ ++ + I + ++L DI + ++ + Sbjct: 63 KMSLSDFIQLWRDNYAEKQLSPKTFETYNNYINTRIIPQLGHLQLADIKPIHLIRFLNNL 122 Query: 111 HNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKA 170 +T+ K+ +S T + ++K I A +WK+L+ Sbjct: 123 KKDETRLDGKK-----------------GSLSEATINYYRRILKNIFNRAV-EWKFLQVN 164 Query: 171 PVIKIPAVRN--KRVRWLEKEEAKRLIDECPEP---LKSVVKFALATGLRKSNIINLEWQ 225 P K+P + + ++ E + L+ + + AL GLRK ++ L+W+ Sbjct: 165 PAEKLPKEKEDIGKGDVYDENETRLLLKCLEKEDLKWRLYFTLALTCGLRKGELLALQWE 224 Query: 226 QIDMQRRVAWVN---------------PEESKSNRAIGVALNDTACKVLRDQ----IGKH 266 ID++ +V P+ KS R I + +L+ + + Sbjct: 225 DIDLESGTLYVKHSLSYTKEKGFFLKEPKSKKSKREIAIP--SFVLPLLKKYKNVRLREK 282 Query: 267 HKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQ 326 K + +T W +R + R HDLRHT A+ ++ Sbjct: 283 EKLQDEWEGGNYNFVFATWNGKPHHHSYPRTKWERFLKRNNLRYIRPHDLRHTSATIMLN 342 Query: 327 SGVPLSVLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIFG 369 +GV + E G S + Y H A D+ FG Sbjct: 343 NGVNYKTVSERLGHSSTRITFDFYVHRTKEADRSAAECFDNQFG 386 >UniRef50_Q72B79 Site-specific recombinase, phage integrase family n=2 Tax=Desulfovibrio vulgaris RepID=Q72B79_DESVH Length = 373 Score = 177 bits (448), Expect = 8e-43, Method: Composition-based stats. Identities = 74/363 (20%), Positives = 134/363 (36%), Gaps = 42/363 (11%) Query: 15 SLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVT----FEEACLRWLEEK 70 GGK++ E++G K + + +AE + + G F +A R+L Sbjct: 34 YRHGGKKVWETIGRKSEGVNAAYAARVRAERVKEVEAGRFIARDEMPVFRDALERYLTVH 93 Query: 71 ADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKG 130 A KS +S + + EH D +I R E Sbjct: 94 AKGKSSES---HMRGYFEHHIAPLFGDAKMDRIKPIHIEELKRSMAE------------- 137 Query: 131 KELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKIPAVRNKRVRWLEK 188 K S QT +A+++ + R + +P +++P V R+R+L + Sbjct: 138 --------KGRSPQTIRHAIALVRQVYRKCVAWGIYTGTSPTDGVEMPKVDAARLRFLTE 189 Query: 189 EEAKRLIDEC---PEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNR 245 EA L+ + +L TG+R ++ L+ +++ V V ++ + Sbjct: 190 AEAASLLHALHRRSRQWHDIAYLSLYTGMRLGEVLGLQVGHVNVADGVIDVMDAKAGT-- 247 Query: 246 AIGVALNDTACKVLRDQIGKHHKWVFVH-TKAAKRADGTSTPAVRKMRIDSKTSWLSACR 304 + ++L + FV + R S+ R A Sbjct: 248 -RAAYMTAGVKEILAARCAGRDAKEFVFVQRGGGRVRYISSVFSRVADELFNDGVTDARH 306 Query: 305 RAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKI 364 + FH LRHT+ SWL Q GVPL + + G S+EM +RY+ L+P+ + + Sbjct: 307 K-----VVFHTLRHTFGSWLAQRGVPLYTIAVLMGHSSLEMTKRYSKLSPDTKHDAMALL 361 Query: 365 DDI 367 ++ Sbjct: 362 PEL 364 >UniRef50_B3CTI8 Putative integrase n=7 Tax=Orientia tsutsugamushi str. Ikeda RepID=B3CTI8_ORITI Length = 379 Score = 177 bits (448), Expect = 9e-43, Method: Composition-based stats. Identities = 80/339 (23%), Positives = 147/339 (43%), Gaps = 40/339 (11%) Query: 45 LWRVEKLGDLPDVTFEEACLRWLEEKA---------DKKSLDSDKSRIEFWLEHFEGIRL 95 ++R KLG+ P+++ A + L K K+ + K + ++ H + Sbjct: 54 VYRKIKLGNFPNISVNYARKKTLILKGQIAKGIDPLKTKNASTLKEVYDLYINHRKLKDS 113 Query: 96 KDISEAKIYS-AVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIK 154 I I + + +H I K+ + K+ Y + K L +IK Sbjct: 114 SKILYKGIMNKYLKNLHYIHVSNIRKEDIYKIFNNAKKGGKY--------SANKTLKLIK 165 Query: 155 AILRAAERDWKWLEKAPV--IKIPAVRNKRVRWLEKEEAKRLIDECPEP----LKSVVKF 208 AIL A + + +EK P IKI + R R++ EE R + E LK V Sbjct: 166 AILNIAV-ELELIEKNPANGIKIHKM-QARDRYITLEEMPRFLAAVEEDKNPYLKYFVYI 223 Query: 209 ALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQ-IGKHH 267 +L T R++N++++ W+ I ++ V ++ E+K+ + V L + + L+ Sbjct: 224 SLYTAARRNNVLSMRWENIRLEEGVWYI--PETKNGESQTVPLINLLIEKLKQYSYSSES 281 Query: 268 KWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQS 327 +WVF +R G T +W C+RAG+++ R HDLR T SW+ + Sbjct: 282 EWVFP---GQRRNSGHLT--------SINVAWKRVCKRAGLKNLRIHDLRRTVGSWMAKF 330 Query: 328 GVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDD 366 G+P++V+ ++ + + Y HL N + + +K + Sbjct: 331 GMPIAVISKLLNHNDHQSTKFYIHLNTNVVRDAIQKFAN 369 >UniRef50_A3NCI9 Phage integrase n=6 Tax=Burkholderia RepID=A3NCI9_BURP6 Length = 381 Score = 177 bits (448), Expect = 9e-43, Method: Composition-based stats. Identities = 87/397 (21%), Positives = 165/397 (41%), Gaps = 48/397 (12%) Query: 1 MSLFRRN--EIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 M+L RRN + WY + + GK+ S GT +K +A ++ + + + LGD +T Sbjct: 1 MTLIRRNNSKNWYYQFQIQ-GKKFFGSTGTPNKTKAAQVEREMRNRAHAEQYLGDAQPIT 59 Query: 59 FEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEI 118 ++A +++E ++D + S + L + R K + +H T++ Sbjct: 60 LKDALEQYVEARSDTSYHRNMCSIVRKTLGYKLHPRTKAKLPCYGMLPDTLLHELTTRDF 119 Query: 119 WKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAV 178 + AA RK + T + +++A + + + + I P + Sbjct: 120 ---DLLAAKRKAEGDK--------PATIKHEIGLLRATINEMAKLGFKVSR--EIVFPEL 166 Query: 179 RNK-RVRWLEKEEAKRLIDEC-PEPLKS---------------------VVKFALATGLR 215 R R+R+L+ + L+ E PE L++ + F L TG R Sbjct: 167 RTSYRLRYLDSNDESALLRELDPERLRARINASKPQTPEMTRNMQDNYDITVFLLDTGCR 226 Query: 216 KSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHH---KWVFV 272 S + N+ W I++ ++ SK + + +LR + + ++VF Sbjct: 227 YSEVANIPWSAINLD--TCTISLYRSKVRNEDVLHMTSRLEAILRRRWEERRTGQRYVFE 284 Query: 273 HTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLS 332 +R G ST +++K + + + G H LRHT+AS L+++GV L Sbjct: 285 DRTGNER--GYSTKSIKKAIERAGLNDPVLVKERG-GRVTLHTLRHTFASKLVKAGVSLY 341 Query: 333 VLQEMGGWESIEMVRRYAHLAPNHL-TEHARKIDDIF 368 + + G +M +RYAHL+PN + + ID + Sbjct: 342 EVSVLLGHSDPKMTQRYAHLSPNDASRKAVKVIDSLL 378 >UniRef50_Q0AUP6 Phage integrase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AUP6_SYNWW Length = 392 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 83/380 (21%), Positives = 141/380 (37%), Gaps = 52/380 (13%) Query: 18 GGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRWLEEKADKKSLD 77 G +R + T KR+A + + E+ DL ++T ++ +W+ +L Sbjct: 26 GERRQHKKRFTGTKREANKYLQRILGEI-ESGSYSDLGNITIKQYLDKWINAYCTPTNLQ 84 Query: 78 SDKSRI------EFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGK 131 R + H +L ++ A I + M +T+ Sbjct: 85 PKTIRSYTSTINNHIIPHLGRHKLNNLKAAHIADYYALMSKSRTE--------------- 129 Query: 132 ELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKRV--RWLEKE 189 +S T H ++ L+ A +L++ PV K+ R R + L E Sbjct: 130 -----GGAGLSPTTVLYHHRILHQALKHAVNQ-DYLKQNPVAKVQPPRKNRPDIKVLSVE 183 Query: 190 EAKRLID-ECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVN----------- 237 +A+ LI E + V AL TG+R++ I L WQ +D R V Sbjct: 184 QARYLIARYSEEQIYLPVFLALMTGMREAEIAALRWQNVDFDNRTLSVTNALQRQENRLE 243 Query: 238 ---PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMR-- 292 P+ KS R+I V + VL+ + + + + + K Sbjct: 244 LKEPKTKKSRRSIPVP--EQVVVVLKKEKERQDCYREILGEGYDCRGFVCAWEDGKPYDP 301 Query: 293 --IDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMV-RRY 349 I + + L A RFHDLRHT A+ L+ + L V+Q+ G ESI Y Sbjct: 302 EWIGKQWAKLVASDDKIPNGVRFHDLRHTHATILLSQNINLKVIQDRLGHESIATTGDIY 361 Query: 350 AHLAPNHLTEHARKIDDIFG 369 +H+ P A ++++F Sbjct: 362 SHVTPGIQQVAADVLENLFS 381 >UniRef50_A0LQG0 Phage integrase family protein n=2 Tax=Deltaproteobacteria RepID=A0LQG0_SYNFM Length = 415 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 86/376 (22%), Positives = 144/376 (38%), Gaps = 37/376 (9%) Query: 19 GKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRWLEEKADKKSLDS 78 GKR K++R+AQE H ++AE R T + K + + Sbjct: 66 GKRPSRK-EIKEEREAQE-HAVKEAEANR---------WTITRLWEEYKRGTPGLKGIVT 114 Query: 79 DKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEP 138 D++R E ++ G + V R+ K+ K VQ K V + Sbjct: 115 DENRFEKHIKPIFGDKQPH---ELGALDVDRLRIGLLKKARKPAVQKTPGDSKPGTVKKS 171 Query: 139 -KPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKRVRWLEKEEAKRLIDE 197 P+ T L +++ I+ + I++P V N R L +E +L+D Sbjct: 172 VDPLKPGTVKNVLELLRRIINFGVKKNLCTGAGFAIELPKVNNLRTEDLTPDELAKLMDA 231 Query: 198 CPEP----LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALND 253 + +++K AL TG+R+ + L+W +D +R + K + +N+ Sbjct: 232 IEKDENLIAANLMKMALFTGMRRGELFRLKWSDLDFERGFIHIRGP--KGGVDQTIPVNE 289 Query: 254 TACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIED--F 311 A K+L+ + +VF +R ID S AG+ Sbjct: 290 EARKILQSHRRTNSGFVFPGRGGHQR-------------IDIHKSVNKIKEAAGLPKGFR 336 Query: 312 RFHDLRHTWASWLIQSG-VPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIFGD 370 H LRH +AS L SG V L LQ + +S M +RYAHL + L + +I Sbjct: 337 ALHGLRHAYASMLASSGKVDLYTLQRLLTHKSPTMTQRYAHLRDSALRNASDLAGEIITG 396 Query: 371 NVPNMSHSEIMEDIKK 386 + + + DI + Sbjct: 397 IMDAKQDEKSILDIIR 412 >UniRef50_A5CCP8 Phage-related integrase n=25 Tax=Orientia tsutsugamushi RepID=A5CCP8_ORITB Length = 414 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 74/349 (21%), Positives = 138/349 (39%), Gaps = 45/349 (12%) Query: 30 DKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRWLEEKADKKSLDSDKSRIEFWLEH 89 D R + + E E+ D+TF+E C +++EE A +++ W E Sbjct: 96 DPRAVKHQQQIEENENRIKERERKANDITFKELCYKYIEEYAKIYTIN--------WKE- 146 Query: 90 FEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKH 149 + ++++ ++ +K +I ++ + Y T Sbjct: 147 ---------NADRVHTYAQALYEKKISKIRMSDIEPIFNDISKEGKY-------ATANAL 190 Query: 150 LAMIKAILRAAERDWKWLEKAPVIKIPAVR-NKRVRWLEKEEAKRLID----ECPEPLKS 204 LA ++ I A + W +E P + I + R R L +E R + E ++ Sbjct: 191 LATLRTIFNKAIK-WGLIENNPTLGIEQHKLQARERRLSYDEMGRFLQVLCGEASPLIRD 249 Query: 205 VVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQ-I 263 AL TG RKSN++ +EW ID +R++ + ++K+ +A + L D A ++L+ + + Sbjct: 250 FALLALYTGARKSNVLEMEWDNIDFERKIWHI--PKTKNGKAQNIPLTDEAMEILQARKL 307 Query: 264 GKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASW 323 KWV S+ + T+W C +A I++FR HDLR T+AS Sbjct: 308 ISTSKWVLP-----------SSTSESGHLSHPNTAWKIICEKASIKNFRIHDLRRTFASC 356 Query: 324 LIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIFGDNV 372 + +G + + Y + E+ K I + Sbjct: 357 MGDAGESQRTISIALNHINPNSTIPYTIACMELVREYMSKAIQIISECA 405 >UniRef50_Q2IFG9 Phage integrase n=2 Tax=Cystobacterineae RepID=Q2IFG9_ANADE Length = 275 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 70/249 (28%), Positives = 116/249 (46%), Gaps = 23/249 (9%) Query: 142 STQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNK---RVRWLEKEEAKRLIDEC 198 S ++ HLA ++ +L A +W+ + +AP +K + + ++L +EA+RL+ Sbjct: 36 SKKSINNHLAALRKLLNLAV-EWEVIPRAPKVKGFRAKTEYITEEQFLTFDEAERLVHAA 94 Query: 199 PEPLKSVVKFALATGLRKSNIINLEWQQIDMQ------RRVAWVNPEES-KSNRAIGVAL 251 ++ + AL TGLR ++ L+W+ +D+ RR W E K R V L Sbjct: 95 APEWRTFIITALKTGLRVGELLALKWEDLDLVAGQLVVRRTLWHKQEGPPKGGRNRKVPL 154 Query: 252 NDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGI-ED 310 +D A VL+ +VF + V S CRRA + + Sbjct: 155 SDEAIAVLKAHRHLKGTYVFCEADGRRLTHSRVKDVVP-----------STCRRAQLAKR 203 Query: 311 FRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIFGD 370 H LRHT+AS L+ GV L ++E+ G ESIEM RY+HL+P+ + + +D Sbjct: 204 LTTHGLRHTFASHLVMRGVSLMAVKELLGHESIEMPLRYSHLSPDVKRDAVKLLDAPSSV 263 Query: 371 NVPNMSHSE 379 N++ +E Sbjct: 264 ANGNLTATE 272 >UniRef50_B6ASA1 Recombinase n=12 Tax=Bacteria RepID=B6ASA1_9BACT Length = 373 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 80/373 (21%), Positives = 145/373 (38%), Gaps = 34/373 (9%) Query: 1 MSLF-RRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTF 59 M+ F +R+ W A+ G RI + TK + + H + + + + + T Sbjct: 13 MAYFRKRSGSWEATIDKKGFNRISRTFNTKTEAEVWTRHIENEMDRGIFVSRKEAENTTL 72 Query: 60 EEACLRWLEE-KADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEI 118 EA R+ E + KK + +RI FW H M R I Sbjct: 73 AEALDRYGREISSGKKGERQEIARIRFWKSH-------------------PMAKRFLASI 113 Query: 119 WKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLE-KAPV--IKI 175 + + AA R + Y + + LA+I + A ++W PV I++ Sbjct: 114 QGKDI-AAFRDERIKDGY-----AANSVRLDLAIISHLFEIARKEWGMAGLVNPVQQIRL 167 Query: 176 PAVRNKRVRWLEKEEAKRLIDEC-PEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVA 234 P R R L E +R++ L + +FA+ TG+R++ I + W+ +D+++R Sbjct: 168 PLKPPGRDRRLMSGEIERILSASGSSVLPDIARFAIETGMRQAEIAGMTWELVDLKKRTV 227 Query: 235 WVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVF-VHTKAAKRADGTSTPAVRKMRI 293 + +K+ V L A ++L + V+ + + A A + R + Sbjct: 228 TLL--NTKNGEKRIVPLPIEAVRILSGLPRRIDGNVWGITSHAVAVAWRRAVSRARAVYE 285 Query: 294 DSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLA 353 A + D FHDLRH S + G+ ++E+ G ++ M+ RY HL Sbjct: 286 KECEEKGEKPDPAFLTDLTFHDLRHEATSRFFELGLRAEKVKEITGHKTYSMLARYTHLK 345 Query: 354 PNHLTEHARKIDD 366 + ++ Sbjct: 346 AEDIAMEIDSLEK 358 >UniRef50_A1VU89 Phage integrase family protein n=2 Tax=Burkholderiales RepID=A1VU89_POLNA Length = 327 Score = 176 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 74/370 (20%), Positives = 143/370 (38%), Gaps = 59/370 (15%) Query: 1 MSLF-RRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVE--KLGDLPDV 57 M+ F +R W G E K A++ ++++ R Sbjct: 1 MATFRKRGNGWQVRVRRLGYP--DEVKTFPIKLDAEQWARSIESDMDRGPFVSRNIAEQT 58 Query: 58 TFEEACLRWLEE-KADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTK 116 +F + R+++E K+ + R+ L +++ S + V Sbjct: 59 SFGDVMRRYMKEITPGKRGCLEETIRLTATLR----LKISKFSMVNLTPEV-------LA 107 Query: 117 EIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAP--VIK 174 E +++ K T + LA++ +I+ A R+W++ + P +I+ Sbjct: 108 EYRDERL---------------KSCQPSTVVRDLAVLSSIINHARREWRFPIQNPIEMIR 152 Query: 175 IPAVRNKRVRWLEKEEAKRLIDEC------PEPLKSVVKFALATGLRKSNIINLEWQQID 228 P + R R L + + L+ E ++ +V A+ T +R+ I+ L W+ +D Sbjct: 153 KPTMPPGRDRVLSRTDEVTLLTELLPTGRRNPLMQPIVVIAIETAMRRGEILGLRWEHVD 212 Query: 229 MQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAV 288 + ++ ++ +K+ ++ V L+ A + LR VF AA A+ Sbjct: 213 LDQQTVFLPI--TKNGKSRYVPLSKRAVETLRTVDRSIDGRVFPIGMAAMEAN------- 263 Query: 289 RKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRR 348 +L A RR + D FHDLRHT S + + L + G S++M++R Sbjct: 264 ----------FLKAVRRGNLGDLHFHDLRHTGTSRMANKLPNVIELAAVTGHTSLQMLKR 313 Query: 349 YAHLAPNHLT 358 Y H + L Sbjct: 314 YYHPKAHDLA 323 >UniRef50_B3T0I4 Putative Phage integrase family protein n=2 Tax=root RepID=B3T0I4_9ZZZZ Length = 422 Score = 176 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 87/383 (22%), Positives = 149/383 (38%), Gaps = 50/383 (13%) Query: 11 YASYSLPGGKRIKESLGTK----DKRQAQELHDKRKAELWRV-----EKLGDLPDVTFEE 61 Y + GG++ ++G +A+ + + ++ D T E Sbjct: 48 YMLKTAIGGRQRWFTIGRHGSPWTVEKARTRAKRIIGNIADGKDPAKDRDADKNKPTVAE 107 Query: 62 ACLRWLEEKADK----KSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMHNRKTK 116 C R+LE+ A + SL SD+ IE L + ++ A I + + K+ Sbjct: 108 LCERYLEDYAKEHKKPSSLKSDQKNIENHVLPLLGREFVASVTFADIDRFKRAVKDGKSS 167 Query: 117 EIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKW--LEKAPVIK 174 K + Q V K V+ + LA++ + AER W W + P Sbjct: 168 RERKPEHQGGPN------VTGGKGVA----NRCLALLSKMFNLAER-WGWCSVGSNPCRH 216 Query: 175 IPA-VRNKRVRWLEKEEAKRLID-----ECPEPLK-SVVKFALATGLRKSNIINLEWQQI 227 + NKR ++L +E L + E P + ++ + TG R I++LEW + Sbjct: 217 VDRYPENKREKFLSDKELAALAEVLNKSESENPYAVAAIRMLIFTGARLGEILHLEWAHV 276 Query: 228 DMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIG-KHHKWVFVHTKAAKRADGTSTP 286 DM+R + + ++ V L+ A VL + K++ V K Sbjct: 277 DMERAMLLLPDPKTGQK---AVFLSAPALDVLANLPHMKNNPHVICGEKDGSHL------ 327 Query: 287 AVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMV 346 ++ + W +RAG+ED R HDLRH++AS G+ L ++ ++ G Sbjct: 328 ------VNLQKPWGRIRKRAGLEDVRLHDLRHSFASVAASGGLSLPMIGKLLGHTQAATT 381 Query: 347 RRYAHLAPNHLTEHARKIDDIFG 369 RYAHLA + L I Sbjct: 382 ARYAHLAADPLKAANEAIGQRIA 404 >UniRef50_Q1QLE5 Phage integrase n=2 Tax=Nitrobacter RepID=Q1QLE5_NITHX Length = 363 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 81/347 (23%), Positives = 129/347 (37%), Gaps = 22/347 (6%) Query: 30 DKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRWL--EEKADKKSLDSDKSRIEFWL 87 D +QAQ L +R + E G +T +A +L E K + + F L Sbjct: 32 DWKQAQTLARRRMVDYAHSEA-GLAKPLTVADAMADYLVYLESKTKSGREGRYAAEAFIL 90 Query: 88 EHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKA 147 F + + +++ +I + M + K + + + + T Sbjct: 91 PAFGKVEVAKLTKEQIDRWHAEMAKAPARIRTKNGRRQRFKTTTDPENDRRRK---STAN 147 Query: 148 KHLAMIKAILRAAERDWKWLEKAPVIKIPA---VRNKRVRWLEKEEAKRLIDECPEPLKS 204 + L KA L A RD K A ++ V R+R+L +EAKRL++ C K Sbjct: 148 RILTTFKAALNMAWRDGKVPTDAAWRRVTPFESVDQARIRYLSMDEAKRLLEACSPSFKR 207 Query: 205 VVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIG 264 +V+ AL TG R +I L + + + +SKS + V L A + Sbjct: 208 LVRVALETGARYGELIALRVEDFNADAGTLHIR--DSKSGKPRHVVLTPEAVTFVVKVAK 265 Query: 265 KHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGI-EDFRFHDLRHTWASW 323 + K R +AC A I FH LRHTWAS Sbjct: 266 GRSPSSMLLVKENGEPWQ---------RDHQADPLKNACATAKIDPPINFHALRHTWASH 316 Query: 324 LIQSGVPLSVLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIFG 369 + GV L ++ G + + + YAHLAP+ + + R F Sbjct: 317 AVMRGVALQIVARQLGHTTTRVTEQHYAHLAPSFVADAIRANAPRFS 363 >UniRef50_Q1MA85 Putative shufflon-specific DNA recombinase n=3 Tax=Alphaproteobacteria RepID=Q1MA85_RHIL3 Length = 317 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 70/344 (20%), Positives = 137/344 (39%), Gaps = 59/344 (17%) Query: 28 TKDKRQAQELHDKRKAELWR---VEKLGDLPDVTFEEACLRW-LEEKADKKSLDSDKSRI 83 K +A++ + ++++ R L T + R+ +E K+ + RI Sbjct: 8 FDSKAEAEKWARELESQVDRFGAAPDTKILETTTLGDLLKRYKIEVSPTKRGCVQEIQRI 67 Query: 84 EFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVST 143 + H + + + +++ + V+ Sbjct: 68 DVLERH-----------EIAHRTLVGLSQPDVASFRDERLSS---------------VAP 101 Query: 144 QTKAKHLAMIKAILRAAERDWKW---LEKAPVIKIPAVRNKRVRWLEKEEAKRLIDECP- 199 T + +A++ ++ A RDW + +++ P +RN+R R LE +E +RL+D C Sbjct: 102 STAVREMAILSHVIEVAMRDWGFPLSRNVVKLVRRPVIRNERKRRLEGDEEQRLLDGCDG 161 Query: 200 ---EPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTAC 256 +++++ A+ TG+R+S I+ L+W I RRV + E +K+ V + A Sbjct: 162 GKIPFMRTLLIVAIETGMRRSEILGLKWTDISHNRRVITL--EMTKNGSGREVPMTQRAF 219 Query: 257 KVL---RDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRF 313 L ++ VF + + W +RA I RF Sbjct: 220 DALSRWKENAPVEESMVFPIAPGS-----------------FEQVWRRLLKRANIVGLRF 262 Query: 314 HDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHL 357 HDLRH S L + G+ + + + G + + M++RY HL+ + L Sbjct: 263 HDLRHEGVSRLFERGLNVIEVSSISGHKELRMLKRYTHLSADDL 306 >UniRef50_C0EDT0 Putative uncharacterized protein n=2 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EDT0_9CLOT Length = 462 Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 79/453 (17%), Positives = 164/453 (36%), Gaps = 87/453 (19%) Query: 2 SLFRRNEIWYASYSL---PGGKRIKE------SLGTKDKRQAQELHDK--RKAELWRVEK 50 ++ +R + + S GGK+I++ + G ++ +EL + E R + Sbjct: 3 TITKRGNTYKITVSCGYDSGGKQIRQHMTWKPAPGMTKRQIEKELERQKVLFEENCRSGQ 62 Query: 51 LGDLPDVTFEEACLRWLEEKADK----KSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSA 106 + + RW+ E A+K K++ ++ L I+L + + Sbjct: 63 F-ISGSIKLADFAQRWMSEYAEKHLKAKTIAHYNELLKRILPALGHIKLDKLQPHHLIQF 121 Query: 107 VSRMHNRKTKEIWKQKVQAAIRKGKE---------------------------------- 132 + +E KQ+ +K + Sbjct: 122 YDNLSESGIREDIKQRCSTDFKKVLKQHGFTKVELSKRAGVSVATLDSVSQGKNITGQSA 181 Query: 133 ---------------LPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKI 175 PV + ++ +T H ++ ++L A + W+ + P +K Sbjct: 182 RRICEAFHIKLQELFTPVDADRGLAAKTINSHHRLLSSMLNTAVQ-WQIIFSNPCDRVKP 240 Query: 176 PAVRNKRVRWLEKEEAKRLIDEC---PEPLKSVVKFALATGLRKSNIINLEWQQIDMQRR 232 P + K R+L++++ +LI PE +++V + TG+R+ + LEW DM+ + Sbjct: 241 PKLERKEARYLDEKQTAQLITCLQREPEQYQTMVLLLIYTGMRRGELCGLEWPDFDMEHK 300 Query: 233 VAWVNPE------------ESKS-NRAIGVALNDTACKVLRDQI-GKHHKWVFVHTKAAK 278 + ++ E +K+ + + L+D A K+L ++ + + Sbjct: 301 LLYIQRESLYLPDRGIFEDTTKTYSSTRVIKLSDEAVKLLIQHKFAQNAERAKLGDAWVD 360 Query: 279 RADGTSTPAVRKMRIDSKTSWL-SACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEM 337 +T + + D+ T+W ++ + H LRHT A+ LI +GV L+ + Sbjct: 361 TGKIFTTCTGKPIHPDTLTTWFHKFVQKNDLPPVSVHSLRHTNATLLIANGVNLTTVAGR 420 Query: 338 GGWESI-EMVRRYAHLAPNHLTEHARKIDDIFG 369 G + YAH A I +I Sbjct: 421 LGHADTGTTTKVYAHAIKTADEMAAETIQNILN 453 >UniRef50_C5V1I5 Integrase family protein n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V1I5_9PROT Length = 411 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 83/415 (20%), Positives = 155/415 (37%), Gaps = 82/415 (19%) Query: 2 SLFRR----NEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDV 57 L RR IW+ + G+ I ES GT D+ +A+ +R E+ + G PD Sbjct: 8 GLRRRPNQTGGIWHID-KVVNGRTIHESCGTSDQDEAERYLARRLEEIRQASVYGVRPDR 66 Query: 58 TFEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKE 117 F A ++L + K S+ +D ++ ++L S++H+ + Sbjct: 67 IFRVAATKYLSDNQHKASVVTDAYMLQSLDPFIGEMQL------------SKLHDGTLQA 114 Query: 118 IWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWK------WLEKAP 171 + +A I+ +++ L++++ IL + R W+ WLE P Sbjct: 115 YITARRKAGIK--------------SKSINNALSVVRRILSLSARKWRDEHGLTWLETPP 160 Query: 172 VIKIPAVRNKRVRW-LEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQ---QI 227 ++ + + R + + EE + E P+ L + F + TG R+ + +L W + Sbjct: 161 LLSMLPTHDARKPYPISWEEQTVFMQELPDHLARMALFKVNTGTREQEVCHLRWDWEIDV 220 Query: 228 ------------DMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHT- 274 D R A+ K+ V LND A V+ G H + VF + Sbjct: 221 PELGTSVFLIPEDFGGRTAY---SGVKNGEDRLVVLNDVARSVVDSCRGIHPELVFTYEG 277 Query: 275 KAAKRADGTSTPAVR-----------------------KMRIDSKTSWLSACRRA--GIE 309 R + ++ R + I A G+ Sbjct: 278 NQTGRMNNSAWDKARLRTAMNMYMASGKTIPVDLLREGQRGILMTDELKKFLESAMPGLA 337 Query: 310 DFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKI 364 + R HDL+HT+ L +GVPL + + G ++ ++ Y+ L + ++ Sbjct: 338 NVRVHDLKHTFGRRLRAAGVPLETRKVLLGHKNGDITSHYSAPEIEELLDGVNRV 392 >UniRef50_UPI00016AD797 phage integrase family protein n=1 Tax=Burkholderia thailandensis MSMB43 RepID=UPI00016AD797 Length = 339 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 82/370 (22%), Positives = 142/370 (38%), Gaps = 55/370 (14%) Query: 5 RRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACL 64 R N W G +S +++A++ +A + + Sbjct: 7 RPNGHWTGKVRKAGYP--AQSATFPTRKEAEKWIIDTEAAINAGRFQNLDGSALLRDVID 64 Query: 65 RWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQ 124 R+L + K +S E RLK I +I S W+ + Sbjct: 65 RYLRDVTPSKKGESS-----------ETWRLKAIQRDEIGSYSVGKLTPAVVANWRDRRL 113 Query: 125 AAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKW-LEKAPV--IKIPAVRNK 181 A + +PVS T + + ++ +L A ++W PV ++ P Sbjct: 114 AGT---------DGRPVSGSTVNREMNLLHHVLETARKEWGLGAPVNPVSEVRRPKNSPA 164 Query: 182 RVRWLEKEEAKRLIDECPE---------PLKSVVKFALATGLRKSNIINLEWQQIDMQRR 232 R R L +E L+ C + L VV+ AL TG+R+ II LE +Q+ + R Sbjct: 165 RERRLTSDEKVALLAACRQTHSRSGRQSYLADVVELALETGMRQGEIIKLEIEQVRLDDR 224 Query: 233 VAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHK---WVFVHTKAAKRADGTSTPAVR 289 + +K+ A V L+ A ++L+ IG WV + + A KR Sbjct: 225 FVGLRAGGTKTEEARTVPLSTRAAEILKSVIGDRTTGRVWVGLTSDAVKR---------- 274 Query: 290 KMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRY 349 +++ A RAGI+D FHD RH + ++ G+ + + + G ++ M+R+Y Sbjct: 275 --------AFIRARDRAGIKDLTFHDSRHDATTRFVELGLTDTEVMSITGHKTQSMMRKY 326 Query: 350 AHLAPNHLTE 359 HL L + Sbjct: 327 THLRAKDLAK 336 >UniRef50_A1VC91 Phage integrase family protein n=1 Tax=Desulfovibrio vulgaris DP4 RepID=A1VC91_DESVV Length = 372 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 85/379 (22%), Positives = 150/379 (39%), Gaps = 53/379 (13%) Query: 10 WYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLG------DLPDVTFEEAC 63 +Y ++ GK++ E +G + + ++E R + G ++T +A Sbjct: 27 FYITFK-DNGKKVFEKVGWRSEGYTAAYASDVRSERVRDIRHGKSSPQGRKGELTINDAW 85 Query: 64 LRWLEEKADKK-SLDSDKSRIEFWL-EHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQ 121 +LE+ K S SD++ WL F ++ + I +RM ++ Sbjct: 86 ALYLEKWLHGKPSEQSDEALYRLWLAPAFGMKKMAGVRPVDIEEFKNRMLAQR------- 138 Query: 122 KVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVI--KIPAVR 179 S QT L +++ + R ++ P + +P V Sbjct: 139 --------------------SPQTVKHALGLLRRVYRKMAAWGEYKGDIPTVSVPMPKVD 178 Query: 180 NKRVRWLEKEEAKRLIDECPEP---LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWV 236 N R+R+L +EA RL++ + V +L GLR I+ L+ +D+ R+ V Sbjct: 179 NGRLRFLTPDEAVRLVEALRKRSVLWADVSLVSLHAGLRLDEILGLQACHVDIDNRLLHV 238 Query: 237 NPEESKSNRAIGVALNDT-ACKVLRDQIGKHH---KWVFVHTKAAKRADGTSTPAVRKMR 292 + + V L D C++LR + +VF + +R + S VR ++ Sbjct: 239 MDAKCGT---RTVPLADRGLCEMLRQRKAACSGAEDFVFKNRNG-ERINNISQTVVRVIQ 294 Query: 293 IDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHL 352 ++ R FH LRHT+ SW+ Q GVPL V+ E+ G ++EM RRY+ L Sbjct: 295 DLGFNHGITDRRH----KVVFHTLRHTFGSWMAQRGVPLYVIGELMGHSTLEMTRRYSKL 350 Query: 353 APNHLTEHARKIDDIFGDN 371 P + I Sbjct: 351 CPETKVDALSFITQAMNSG 369 >UniRef50_Q1RJE3 Integrase n=9 Tax=Rickettsia RepID=Q1RJE3_RICBR Length = 388 Score = 174 bits (441), Expect = 5e-42, Method: Composition-based stats. Identities = 76/340 (22%), Positives = 138/340 (40%), Gaps = 43/340 (12%) Query: 46 WRVEKLGDLPDVTFEEACLRW-------------LEEKADKKSLDSDKSRIEFWLEHFEG 92 + K+G P ++ +A L+ +EEKA + K + +L+ + Sbjct: 61 YHRIKIGVFPYLSIIDARLKASELKGKIAQGYNPIEEKARLSKEPTFKEFYDRYLDEYSK 120 Query: 93 IRLKDISE--AKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHL 150 I K + A + ++NRK I K +Q K + Y + L Sbjct: 121 INNKRWKDYAASVDRYAKHLYNRKISTIQKADIQELFNKLTKTGKYG--------ANRFL 172 Query: 151 AMIKAILRAAERDWKWLEKAPVIKIPAVRNK-RVRWLEKEEAKRLIDECPEP----LKSV 205 ++ + A +W+ L PVI I + + R R+L +EE R E +K Sbjct: 173 EVLSPVFSKAI-EWELLTVNPVIGIKKHKEQSRDRYLTREEIPRFFTAISEEQNQVMKDF 231 Query: 206 VKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGK 265 AL T +RK N++ + W+QI + ++ ++K+ + L D A ++L+ + + Sbjct: 232 FLIALYTSVRKDNVLTMRWEQISFADKQLYL--PDTKNGDPHRLPLLDQAVEILKARKEQ 289 Query: 266 HHK-WVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWL 324 WVF ++ + K +W C++AGIE+ R HDLR T SW+ Sbjct: 290 SDSIWVFPSETSSS-----------GHLQEPKKAWKRICKKAGIENLRIHDLRRTIPSWM 338 Query: 325 IQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKI 364 +G V+ ++ Y LA + E+ ++ Sbjct: 339 AMTGANQYVIGQLLNHRDPRSTAVYTRLATDTAREYMQRA 378 >UniRef50_B9KV34 Phage integrase n=4 Tax=Rhodobacter RepID=B9KV34_RHOSK Length = 434 Score = 174 bits (440), Expect = 7e-42, Method: Composition-based stats. Identities = 66/343 (19%), Positives = 138/343 (40%), Gaps = 33/343 (9%) Query: 48 VEKLGDLPDVTFEEACLRWLEEKADK---KSLDSDKSRIEFWLEHFEGIRL-KDISEAKI 103 E+ F++ R+L+E + S KS + + + G +L +I++ + Sbjct: 99 GERSRRREAPRFQDLIDRYLKEHVPRLAPVSAADQKSMLAKLVAPYWGRKLVTEITKPDV 158 Query: 104 YSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERD 163 ++++ + + + + ++L +P PV + +++ + A + Sbjct: 159 EKLLAQIAEGRARPSKAKP----NNRARKLQGPKPTPVRA---NRVGEVLRKMFNLAI-E 210 Query: 164 WKWLEKAPVIKI-PAVRNKRVRWLEKEEAKRL---IDECPEPLKS-VVKFALATGLRKSN 218 W W P + N R R+L K+E RL +D + + +++ + TG R Sbjct: 211 WGWRTDNPANGFFRRIENPRERFLSKDEIDRLAKALDAAEDQRAAGIIRICMLTGARVGE 270 Query: 219 IINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQI---GKHHKWVFVHTK 275 + ++Q D++ + +K R V +++ ++R + K W+F Sbjct: 271 VRQSRFEQFDLEHCLWSKPAATTKQRRVHRVPISEDVSAIVRQRRLLVPKGSPWLFPGDV 330 Query: 276 AAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQ 335 + + + W+ + A IE R HDLRHT+AS L+ G L ++ Sbjct: 331 PGQPVK------------EIRRFWIRIQKEAQIEGVRIHDLRHTFASLLVSGGASLEMIG 378 Query: 336 EMGGWESIEMVRRYAHLAPNHLTEHARKIDDIFGDNVPNMSHS 378 ++ G ++ +RYAHL L + +F P + H Sbjct: 379 KLLGHTQMQTTQRYAHLMEGPLRAGVDAVASVFRPK-PTLVHD 420 >UniRef50_B8IQS5 Integrase family protein n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IQS5_METNO Length = 425 Score = 174 bits (440), Expect = 7e-42, Method: Composition-based stats. Identities = 93/389 (23%), Positives = 158/389 (40%), Gaps = 38/389 (9%) Query: 10 WYASYSLPGGKRIKESLGT-KDKRQAQE-----LHDKRKAELWRVEKLGDLPD----VTF 59 W A+ LP GKR++ LG D QA ++A V L PD +T Sbjct: 49 WLAASRLPDGKRVQVRLGRADDVAQADGSTVLTHEQAKEATRAWVRSLQAAPDAQPTLTV 108 Query: 60 EEACLRWLEEKADK--KSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMHNRKTK 116 +A R+LE + + K++ +SR L R+ D++ K+ M + + Sbjct: 109 ADALERYLEARTAEGMKAVYDARSRARTHILPKLGATRVSDLTLDKLRRWRDAMVHAPKR 168 Query: 117 EIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAE--------RDWKWLE 168 + + + +L E T + L ++KA L A R W+ L+ Sbjct: 169 VRTGKLAKQVNTRPVDLSDPEALRRRRDTANRTLTLLKAALNWAYQHQLADNDRAWRLLK 228 Query: 169 KAPVIKIPAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQID 228 + RVR+L+ E +RL++ C L+ +V AL TG R + L + D Sbjct: 229 P-----FRDTGSARVRFLDAAEQQRLLNTCDGALRDLVATALMTGARFGELSRLMVRDFD 283 Query: 229 MQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAV 288 ++ E SK+ RA V L + + + G +T Sbjct: 284 RANGTVFI--ERSKNGRARHVPLTPGGVALFERLSAGRAPKALLLIRENGEGWGPAT--- 338 Query: 289 RKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRR 348 + S+ +A RA +E H+LRH++AS ++++G PL V+ E G M + Sbjct: 339 ------YQRSFKTALDRAKLESITLHELRHSYASAMVRNGAPLIVVAEALGHSGTRMAEK 392 Query: 349 -YAHLAPNHLTEHARKIDDIFGDNVPNMS 376 YAHLAP+++ + R+ N++ Sbjct: 393 HYAHLAPSYVADTIRRTAPDLALPAGNVA 421 >UniRef50_D0KZD4 Integrase family protein n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KZD4_HALNC Length = 348 Score = 174 bits (440), Expect = 7e-42, Method: Composition-based stats. Identities = 86/367 (23%), Positives = 148/367 (40%), Gaps = 43/367 (11%) Query: 5 RRNEI-WYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLG--DLPDVTFEE 61 +R + W G ++ +++A ++E+ R + + E Sbjct: 6 KRGDYQWRVQIRRKGHPTQCKT--FFTRKEADAWARLIESEMDRGVFFSRVEAESTSLAE 63 Query: 62 ACLRWLEE-KADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 A R+ +E + KKS + RI FWL H +S + S R + K Sbjct: 64 ALERYRKEVTSRKKSAHREGVRINFWLTH-------PLSSRMLASFRGADFARFRDDRRK 116 Query: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDW---KWLEKAPVIKIPA 177 + +S T LA+I + A +W L I +P+ Sbjct: 117 E------------------GISDSTIRLDLALISHVFTIARTEWQMEGLLNPVRSIAMPS 158 Query: 178 VRNKRVRWLEKEEAKRLIDEC----PEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRV 233 KR R LE E RL+ E E + V FA+ T +R+S I++L Q ID +++ Sbjct: 159 ASRKRDRRLEAGELDRLLVELRKSRNEYVVPAVLFAIETAMRQSEILSLRTQDIDREKQT 218 Query: 234 AWVNPEESKSNRAIGVALNDTACKVLRDQ-IGKHHKWVF-VHTKAAKRADGTSTPAVRKM 291 A++ +++K+N V L+ A +L + H +F V RA S R + Sbjct: 219 AYL--KDTKNNEPRVVPLSRAAMGILDTMPLPLHGGRLFSVTQDGLIRAFSRSVTQARNV 276 Query: 292 RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSG-VPLSVLQEMGGWESIEMVRRYA 350 I+ S + + + +FHDLRH S ++G + + + ++ G ++I M+ RY Sbjct: 277 YIEDCISANAQPDDHFLNNLKFHDLRHEATSRFFETGNLEMMEVAQITGHKTITMLSRYT 336 Query: 351 HLAPNHL 357 HL L Sbjct: 337 HLRAEDL 343 >UniRef50_Q3SHX2 Site-specific recombinase, phage integrase family n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SHX2_THIDA Length = 352 Score = 174 bits (440), Expect = 7e-42, Method: Composition-based stats. Identities = 75/375 (20%), Positives = 146/375 (38%), Gaps = 45/375 (12%) Query: 2 SLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVE--KLGDLPDVTF 59 ++ +R E+ + + G ++ +++A+ + ++E+ R ++ T Sbjct: 3 TIRKRGELQWQAIVKRKGYPLQSKT-WNTRKEAEAWARQIESEMDRGVFVSRAEVERTTL 61 Query: 60 EEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIW 119 ++ R+ E K + +H L +S I + Sbjct: 62 QDLIGRYRIEVLPNKRGKHFGPALRVLEQHLGKYSLAALSPKLIAGFRDK---------- 111 Query: 120 KQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKW-LEKAPV--IKIP 176 +S T K + ++ ++ A ++W L P + P Sbjct: 112 ----------------RTKAGLSASTVKKEINLLSKLIDLAGKEWGVALPANPCAMVSRP 155 Query: 177 AVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWV 236 +N R R L+ EE K L+ C + + + +FAL T R ++ L W +D +RV + Sbjct: 156 VEKNARDRRLQPEEEKYLLTACEQHVALLSRFALETAARLGELLALRWADVDTTKRVMVI 215 Query: 237 NP---EESKSNRA-IGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMR 292 +KS A V L+ A VL D++ K + + +A + + + Sbjct: 216 RGIDERGTKSGDALRAVPLSPAAVSVL-DELKKLPRGIDGRVFYWWKASDSFSKTWGRAL 274 Query: 293 IDSKTSWLSACRRAG-------IEDFRFHDLRHTWASWLIQSGV-PLSVLQEMGGWESIE 344 + S+++ C +AG + D RFHDLRH S L + GV + + G +++ Sbjct: 275 TRAHASYIADCEKAGGEPDQAFLIDLRFHDLRHEATSRLFEKGVFDSMEVASITGHKTLA 334 Query: 345 MVRRYAHLAPNHLTE 359 M++RY HL L + Sbjct: 335 MLKRYTHLRAEDLAK 349 >UniRef50_Q30Q21 Phage integrase n=1 Tax=Sulfurimonas denitrificans DSM 1251 RepID=Q30Q21_SULDN Length = 368 Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats. Identities = 73/327 (22%), Positives = 133/327 (40%), Gaps = 45/327 (13%) Query: 50 KLGDLPDVTFEEACLRWLEE-KADKKSLDSDKSRIEFWL-EHFEGIRLKDISEAKIYSAV 107 K TFE+A L + E K +KK+ SD+ + F +K I I Sbjct: 75 KSQRAKKFTFEDAWLAYYEWAKVNKKTYISDEQYYRLHIAPTFANKDIKSIKSKDIEQF- 133 Query: 108 SRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWL 167 +Y K + Q+ ++ +++ I+ A ++ Sbjct: 134 -------------------------KQLYTSKGYAAQSVKHYIGLMRHIINYAIKNDLIK 168 Query: 168 E-KAPV----IKIPAVRNKRVRWLEKEEAKRLIDEC----PEPLKSVVKFALATGLRKSN 218 P+ +K+P + N R +L KE+A+ ++DE L + L TG R S Sbjct: 169 NYANPISGGKVKLPTIDNARQAFLSKEQARVILDELLQYENPQLYQLTILLLYTGARFSE 228 Query: 219 IINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIG-KHHKWVFVHTKAA 277 + +L W I+ + + + + +K+ A V +N+ +V+ K++ + +TK Sbjct: 229 VASLTWNNINFETNMIY--FKATKNGNARWVFMNELVKEVIEQLKADKNNNLIIANTKGK 286 Query: 278 KRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEM 337 + + + I + A +R H LRHT ASWL +G+ + ++E Sbjct: 287 QMERMLHSWQIVVDNIIDENKEADAKQR-----VTVHSLRHTHASWLAMAGLDILHIKEQ 341 Query: 338 GGWESIEMVRRYAHLAPNHLTEHARKI 364 G +++EM RY+HL PN E + Sbjct: 342 LGHKTLEMTMRYSHLIPNKRHEATELL 368 >UniRef50_A7HHG2 Phage integrase family protein n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HHG2_ANADF Length = 365 Score = 173 bits (439), Expect = 9e-42, Method: Composition-based stats. Identities = 78/368 (21%), Positives = 143/368 (38%), Gaps = 40/368 (10%) Query: 11 YASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDL--PDVTFEEACLRWL- 67 + KR++ ++ A+ L K + + + T E+ W Sbjct: 19 WIKLPSGQLKRVRVK-KIPSQKHAKMLLAKLEIDAFEGRWFDRQLEAKTTVEDCWKAWEP 77 Query: 68 EEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAI 127 + D S SD R +EH +R+ ++ ++ V+ Sbjct: 78 ITRRDNDSWRSDVDRARHLVEHLG--------------------SRRAAKLTRKDVEEYR 117 Query: 128 RKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPA--VRNKRVRW 185 K E P + T + +A++K + A + L + P+ +P N R Sbjct: 118 EKRFEETTRRGGPPAPGTIDREIALLKRCINFAI-ECGTLVRNPIAAVPLLNEPNTRDMV 176 Query: 186 LEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNR 245 L+ +R++ P V++F TGLRK+ + L W+Q+D+ ++ +E+K+N Sbjct: 177 LKPVMLERILKAAPPTFAPVIEFDYETGLRKTELRFLRWEQVDLGLGCIRLSAKETKTNE 236 Query: 246 AIGVALNDTACKVLRDQIGK-HHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACR 304 A V L A ++LR + H +VFV+ + + AC Sbjct: 237 ARVVYLTSRALEILRATPRQLHSPYVFVNPDTGRPWS------------EHNKMLRRACE 284 Query: 305 RAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKI 364 RAG FHDLR ++ + +SGVP SV+ ++ G ++ + RY + L +I Sbjct: 285 RAGYAGIWFHDLRRSFVTNARRSGVPESVVMKLSGHKTRSVFDRYNIIDEGDLKAAVERI 344 Query: 365 DDIFGDNV 372 D + Sbjct: 345 DAARREGA 352 >UniRef50_C2RY84 Prophage LambdaBa04, site-specific recombinase, phage integrase n=4 Tax=Bacillus cereus group RepID=C2RY84_BACCE Length = 378 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 77/399 (19%), Positives = 145/399 (36%), Gaps = 62/399 (15%) Query: 5 RRNEIWYASYSLPG----GKRIKES-LGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTF 59 +R E W + + GKR +++ G K K++A+ ++ + + L D ++T Sbjct: 7 KRGEKWSFTIDIGRDPLTGKRKQKTVSGFKTKKEAERACNELIHQ-FNTGSLVDDKNLTL 65 Query: 60 EEACLRWLEEKADKKSLDSDKSRIEF-----WLEHFEGIRLKDISEAKIYSAVSRMHNRK 114 E WLE A ++ D+ + +LKD+ V + + + Sbjct: 66 SEYLQEWLENTAKQRVRDTTFINYRRAVNSRIIPVIGSHKLKDLKPLHGQRFVKSLIDEE 125 Query: 115 TKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV-- 172 +S + ++K L A + W+ L K P Sbjct: 126 --------------------------LSPKYIEYIFIVLKGALEDAVK-WELLYKNPFEH 158 Query: 173 IKIPAVRNKRVRWLEKEEAKRLIDEC---PEPLKSVVKFALATGLRKSNIINLEWQQIDM 229 ++IP R EE K + + AL TG+R+ ++ L+W+ +D+ Sbjct: 159 VEIPRPRKVVNNTWSIEETKTFLTYAKFDNPIYYHLFLLALNTGMRRGELLGLKWKNVDL 218 Query: 230 QRRVAWVN--------------PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTK 275 V P+ S S R I + + + CK L+ K +++ K Sbjct: 219 VEGKVSVTETLIYDELGFRFTEPKTSGSKRLISI--DQSLCKELKSYKAKQNEFKLAIGK 276 Query: 276 AAKRADGTSTPAVRK--MRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSV 333 A + D + + T + + A + RFHDLRHT A+ L++ G+ + Sbjct: 277 AYEDNDLVFSREDGRPIYPRTLTTVFERFIKTAQVPKIRFHDLRHTHATLLLKLGINPKI 336 Query: 334 LQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIFGDN 371 + E G SI+ Y+H+ + + + Sbjct: 337 VSERLGHNSIKTTLDTYSHVTLDMQESATIALSEALKSQ 375 >UniRef50_UPI0001826473 putative integrase n=1 Tax=Enterobacter cancerogenus ATCC 35316 RepID=UPI0001826473 Length = 431 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 84/422 (19%), Positives = 162/422 (38%), Gaps = 67/422 (15%) Query: 9 IWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDL-------------- 54 IW+ G R++ESLG D + +++ + +A + K G Sbjct: 19 IWFI----YKGSRVRESLGVPDTPKNRKVAGELRASVCFSIKTGSFNYAAQFPDSPNLRR 74 Query: 55 -----PDVTFEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSR 109 ++T E +WLE K + S ++ + I ++ SAV++ Sbjct: 75 FGMESKEITVLELANKWLELKRMEISTNAMSRYSSIARN-----MVPRIGGDRLVSAVTQ 129 Query: 110 MHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEK 169 ++++ K K S +T ++ + + A D +++ Sbjct: 130 EDLLFI----RKELLTGYHVLKTGQKTPVKGRSVRTVNNYMRTMSGMFNFAA-DSGYVKA 184 Query: 170 APVIKIPAVRNKR--VRWLEKEEAKRLIDEC-PEPLKSVVKFALATGLRKSNIINLEWQQ 226 P I ++ R L +EE R+I+ C + LK++ A+ TG+R ++ L W+ Sbjct: 185 NPFNGISLLKRARTEPDPLTREEFIRMINACTHQQLKNMWSLAVYTGVRHGELVALAWED 244 Query: 227 IDMQRRVAWVN----------PEESKSNRAIGVALNDTACKVLRDQ-----IGKHHKWVF 271 ID++ + ++++ + L A VL+ Q +GK H+ + Sbjct: 245 IDLKAGTMIIRRNHTLTKEFTLPKTEAGTDRIINLIQPAIDVLKSQAEMTRLGKQHQ-IE 303 Query: 272 VHTKAAKRADGTSTPAVRKMRIDSK--------------TSWLSACRRAGIEDFRFHDLR 317 V + R+ V +I S+ SW SA RRAGI + + R Sbjct: 304 VKLREYGRSVAHPCTFVFNPQIVSRNSLAGNHYAVGSINQSWESAMRRAGIRYRKAYQSR 363 Query: 318 HTWASWLIQSGVPLSVLQEMGGWESIEMVRR-YAHLAPNHLTEHARKIDDIFGDNVPNMS 376 HT+A W + +G + + + G +MV R Y + + ++ + P+M Sbjct: 364 HTYACWSLAAGANPNFIAKQMGHTDAQMVYRVYGSWMAENNQDQVLILNQKLSEFAPSMP 423 Query: 377 HS 378 H+ Sbjct: 424 HA 425 >UniRef50_C6HVL4 Phage integrase family protein n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HVL4_9BACT Length = 351 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 82/374 (21%), Positives = 139/374 (37%), Gaps = 61/374 (16%) Query: 2 SLFRRN----EIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRV--EKLGDLP 55 S ++RN +W G S + ++ + ++ + R + + Sbjct: 3 SFYKRNLSDSTVWEVKIRRKGYPVQMRS--FDKREDGEKWAREIESSMDRGVFKSTKEGE 60 Query: 56 DVTFEEACLRWLEE-KADKKSLDSDKSRIEFWLEH-FEGIRLKDISEAKIYSAVSRMHNR 113 T +EA R+LEE KK ++SRIE W H L I I S + Sbjct: 61 KTTLKEALDRYLEEVSKHKKGHRRERSRIEKWKAHSLSSRYLASIGPKDIADYASERKSE 120 Query: 114 KTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLE-KAPV 172 S +T LA+I + A W + PV Sbjct: 121 --------------------------GFSMRTIHLELAIISHLYNYAAAKWGMRALENPV 154 Query: 173 --IKIPAVR-------NKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLE 223 ++ R R L E ++L + E +K +V AL TG+R+ +I+L Sbjct: 155 APTRVKGTDPHRGQNYRGRERTLSLSEKEKLFEHLNEEMKQIVTLALETGMRRGELISLT 214 Query: 224 WQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGT 283 +D+ +++ V +E+K+ + V L+ A L+ +G F D Sbjct: 215 ISNVDLTKKI--VKLDETKNGDSREVPLSPAAVDTLKAVLGNKKIVGFDGKLWTMGPDRV 272 Query: 284 STPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESI 343 + + + +A + AG++D RFHDLRHT A+ L L ++ G + + Sbjct: 273 T------------SVFANAAKEAGLKDIRFHDLRHTAATKLAGI-YQAHELAKILGHKVL 319 Query: 344 EMVRRYAHLAPNHL 357 MV RY + L Sbjct: 320 NMVMRYYNPTGEDL 333 >UniRef50_C2YK72 Phage integrase n=3 Tax=Bacillus cereus group RepID=C2YK72_BACCE Length = 387 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 84/406 (20%), Positives = 149/406 (36%), Gaps = 67/406 (16%) Query: 2 SLFRRNEIWYASYSLPGGKRIKESL--GTKDKRQAQELHDKRKAELWRVEKLGDLPDVTF 59 S +R + W + KE+ G K K++AQ K + +L L D +TF Sbjct: 3 SFRKRKDKWEYRIRYKEMGKYKETSKGGFKTKKEAQLAAAKVEEKLATGGNLKD-SKITF 61 Query: 60 EEACLRWLEEK-----ADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRK 114 E WL A + + +K+ L F +RLKD++ K ++ + + Sbjct: 62 NEYLYEWLNTYKKGNVAPRTYMVYEKNIRLHILPAFGELRLKDLTRIKYQKFINGLMEK- 120 Query: 115 TKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIK 174 Y K V +T + L A + LEK P K Sbjct: 121 ---------------------YSKKTV--ETIN---VTMHHALDIAVNELGILEKNPTSK 154 Query: 175 IPAVRNKRVRW-------LEKEEAKRLIDECPEP-----LKSVVKFALATGLRKSNIINL 222 I +R RV + +E ++ ++ + S+ F TGLR + L Sbjct: 155 I-KLRTTRVTSKDDEIKCYDIDELQQFLNYVLKEKGGFKYFSLFMFLSRTGLRIGECLAL 213 Query: 223 EWQQIDMQRRVAWVN---------------PEESKSNRAIGVALNDTACKVLRDQIGKHH 267 +W+ +D + + ++N P ++KS++ ++L+ + L+ + + Sbjct: 214 QWEDVDFEEQKLFINKTLINTKRSEKILFGPPKNKSSK-RTISLDPSTISHLKKMKIEQN 272 Query: 268 KWVFVHTKAAKRADGTSTPAVR--KMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLI 325 K V + K K + T + S L A ++ + H RHT A L+ Sbjct: 273 KQVLKNGKYYKDYNFVFTHEDNSCMLHPSSLKFLLEASKKGNFKYITLHGFRHTHAVHLL 332 Query: 326 QSGVPLSVLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIFGD 370 QSG + + E G SI+M Y H+ + + D+ Sbjct: 333 QSGANIKYVSERLGHSSIDMTANVYLHITKSMEETAVNQYDEFLKS 378 >UniRef50_B8J4X3 Integrase family protein n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8J4X3_DESDA Length = 398 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 76/390 (19%), Positives = 152/390 (38%), Gaps = 65/390 (16%) Query: 5 RRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDV------- 57 + ++I+Y Y L GK+++E +G + +R K + + L + Sbjct: 37 KADKIYYIMYRL-DGKKVEEKVGRESERMTVAKAAKIREQRINGVTLPNTERRRQRLEKA 95 Query: 58 -------TFEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRM 110 T + + + K + +D++R + +L F + ++++ + + ++ Sbjct: 96 QAEAGRWTIGKLWKAYKDNNPGLKGIVTDENRFKNYLSGFTKLSPEELTTQMVDTLRLKL 155 Query: 111 HNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKA 170 ++ GK+ T L +++ I+ + + Sbjct: 156 ----------------LKSGKK----------AGTTKNVLELLRRIINFGVKKGLCAWQD 189 Query: 171 PV---IKIPAVRNKRVRWLEKEEAKRLIDEC----PEPLKSVVKFALATGLRKSNIINLE 223 P ++P + N + L KEE R I+ ++ A TG+R++ + L+ Sbjct: 190 PSRLHFEMPKLNNVKTEMLTKEERARFIEAAKAAPNRKAGQLMLMAYYTGMRRNELFGLK 249 Query: 224 WQQIDMQRRVAWVNPEE---SKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRA 280 W ID + + E+ +KSNR + L+ ++L + ++VF R Sbjct: 250 WAHIDFEHGFINIVGEKQEGAKSNRDERIPLSPPVRELLAEVGDNGSEYVFPGKDGRSR- 308 Query: 281 DGTSTPAVRKMRIDSKTSWLSACRRAGIE-DFRF-HDLRHTWASWLIQSGVPLSVLQEMG 338 ID + AG+ DFR H LRHT+AS + +GVPLS +Q++ Sbjct: 309 -----------MIDMNKQVNAIKAAAGLPKDFRPLHGLRHTFASVAVSNGVPLSHVQKLL 357 Query: 339 GWESIEMVRRYAHLAPNHLTEHARKIDDIF 368 + + +RYAHL L A + + Sbjct: 358 THKDPTLTQRYAHLEDEALKNAANMVGNFL 387 >UniRef50_UPI00003841F3 COG0582: Integrase n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI00003841F3 Length = 394 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 75/386 (19%), Positives = 138/386 (35%), Gaps = 61/386 (15%) Query: 1 MSLFRRNEIWYASYSLPGGKRIKESLGTK-------DKRQAQELHDKRKAELWR---VEK 50 + + R + GG++ + ++G+ + +A L KR+ +L E+ Sbjct: 33 LRVTNRGAKSFILDYRIGGRQRRITIGSYPDWSVAAARTEAGNL--KREVDLGNDPMGER 90 Query: 51 LGDLPDVTFEEACLRWLEEKADKKSLDSDKSRIEFW----LEHFEGIRLKDISEAKIYSA 106 D T + R+ + +K+ S W L ++ D++ I + Sbjct: 91 HADRAAPTMRDLWDRYKRDHLPRKAARSQADETMMWEKLVLPTLGKHKVGDVTHTDIEAL 150 Query: 107 VSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKW 166 + + + + + +++ A R W+W Sbjct: 151 HRDITVSRGTPVR--------------------------ANRVIEVVRRAFNLAIR-WEW 183 Query: 167 LEKAPVIK-IPAVRNKRVRWLEKEEAKRLIDECPEPL----KSVVKFALATGLRKSNIIN 221 +EK P + KR R+L EE RL ++ + TG RKS ++ Sbjct: 184 IEKNPASGQLRNPEEKRQRYLSPEELSRLSAALTAHHEPVSADAIRMLMLTGARKSEVLG 243 Query: 222 LEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRD-QIGKHHKWVFVHTKAAKRA 280 W+ D+ V +K + V ++ A +L+ + +VF + Sbjct: 244 ATWEMFDLDAGVWTKPSAHTKQRKEHRVPVSANALTLLKRIRETAEGPYVFPGKGGDQPL 303 Query: 281 DGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGW 340 D K SW + C+ A I R HDLRH++AS L+ G L ++ M G Sbjct: 304 ------------TDVKRSWAAVCKAADITGARIHDLRHSFASLLVSGGASLPIIGAMLGH 351 Query: 341 ESIEMVRRYAHLAPNHLTEHARKIDD 366 ++ +RYAHL L A + Sbjct: 352 TQVQTTQRYAHLYDEPLRAAADHVGK 377 >UniRef50_C7LSP4 Integrase family protein n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LSP4_DESBD Length = 392 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 73/372 (19%), Positives = 149/372 (40%), Gaps = 31/372 (8%) Query: 8 EIWYASYSL--PGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLR 65 + +Y Y L G K I+E +G + + +A + L + T E+A Sbjct: 26 KTYYIRYRLGGRGSKEIEEPVGKSTSAMTEAKASQARAARMTGQTLPNTERRTQEKAAQE 85 Query: 66 WLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQA 125 + + + + + + + + + + + EI ++ Sbjct: 86 AIT------GRWTVQKIWDEYDDAHKDRACAKPDASYANRLLPELGEKTPSEIVTLDLER 139 Query: 126 AIRK-GKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAP--VIKIPAVRNKR 182 R K K +S QT+ LA++K +LR A D ++ ++P V N++ Sbjct: 140 LRRNLAKTKSPRTRKTLSAQTQKHVLALLKRMLRWAA-DMGHIDPPVHLKFRMPTVDNEK 198 Query: 183 VRWLEKEEA----KRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNP 238 ++ +++ K L +E + + + AL TG+R++ ++N+ W +D++ + Sbjct: 199 TEFMTEDQLSAYLKALDEESNQHCAAFFRIALLTGIRRTALLNVMWSDVDLENGFLTLRG 258 Query: 239 EESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTS 298 +K+ + + L+ A +VL+ + + +++ R D + Sbjct: 259 ATAKNEKTQTIPLSPGAVEVLKGIVRPNSPYIWPGQNGGARED-------------MRRM 305 Query: 299 WLSACRRAGIE-DFRF-HDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNH 356 +AG+ DFR H LRH +AS L SG L + + + + +RYAHL+ Sbjct: 306 GRRLRDKAGLPADFRPVHGLRHHFASHLASSGASLYEVGTLLTHGDLSVTKRYAHLSDQA 365 Query: 357 LTEHARKIDDIF 368 L A DD+ Sbjct: 366 LRRAASLADDMV 377 >UniRef50_A6FVR7 Phage integrase n=3 Tax=Roseobacter sp. AzwK-3b RepID=A6FVR7_9RHOB Length = 390 Score = 172 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 86/348 (24%), Positives = 152/348 (43%), Gaps = 36/348 (10%) Query: 46 WRVEKLGDLPDVTFEEACLRWLEEK-------------ADKKSLDSDKSRIEFWLEHFEG 92 RV KLG P+++ E+A L+ K KS+ D+ + +L ++ Sbjct: 53 MRVIKLGCFPELSAEDARQLCLKHKREISVGASADELAKSTKSITLDQFYEDHYLPWYKT 112 Query: 93 IRLK--DISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHL 150 R +I + + R +R+ I + ++ + K+L + + + Sbjct: 113 YRRASANIVQMYRSNFHLRFGHRQLHSISQTDLKQLTNEMKQL------GYAPGSVNTTV 166 Query: 151 AMIKAILRAAERDWKWLEKAPVIKIPA---VRNKR-VRWLEKEEAKRLIDECPE----PL 202 +++ +LR A+ DW + P KR R+L ++EA++L + P+ Sbjct: 167 VVLRGMLRRAD-DWGLCRIHHSLHKPPNLLPDTKRHERFLSRDEAQKLQVVLRKRGATPV 225 Query: 203 KSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQ 262 + F L TG RKS ++N EW+ I+M R + SK+ + V L+ A +L+ Sbjct: 226 NLAILFLLYTGARKSEVLNAEWRSINMDRCEWRIPL--SKNGQPRTVILSQKAVAILQSA 283 Query: 263 IGKHHKWVFVHTKAAKRADGTST-PAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWA 321 + + K AK+ P + +W A + D R HDLRH++A Sbjct: 284 RSYQQRH---YGKQAKQVSAVFANPQTLLPYHNIWETWKRVRIEADLPDLRLHDLRHSYA 340 Query: 322 SWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIFG 369 S LI +GV + +Q++ G I +RYAHLA L E + +D+ +G Sbjct: 341 STLINAGVSIYEVQKLLGHSHIATTQRYAHLASERLHETVKLLDEQYG 388 >UniRef50_UPI0000E0E5BD Tyrosine recombinase xerC n=2 Tax=Proteobacteria RepID=UPI0000E0E5BD Length = 383 Score = 172 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 66/301 (21%), Positives = 129/301 (42%), Gaps = 20/301 (6%) Query: 67 LEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAA 126 L + S + EFW +++ + + ++ R+ + T + Sbjct: 88 LSPPIAQASPTCTFTLNEFWEQYYWPHIKTRLRTCRNIESMWRIRIQPTFGHQRLDDIKV 147 Query: 127 IRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIP--AVRNKRVR 184 + + +S H+ ++ + A + W+ + K P K+ N++ R Sbjct: 148 LELERFQTSLIEMQLSGSHVTGHIKLLSRMFTLAIQ-WELITKNPCDKVEYMKFDNQKER 206 Query: 185 WLEKEEAKR----LIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEE 240 +L +E R L++ P+ ++ F L TG+R +L W I+M++++ V P Sbjct: 207 FLSSDEQTRFISVLMEHPERPVNLLMIFLLVTGVRSGVAKSLRWSWINMEKQIITVPPSI 266 Query: 241 SKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWL 300 +K+ + + LN TA +L+ G + +VF++ P + D K S+ Sbjct: 267 AKNKKQNTIFLNTTAMDILKRLAGINPTYVFIN------------PMTQLPYNDFKKSFK 314 Query: 301 SACRRAGIED-FRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTE 359 +A + A I D R HDLRHT+ S L+ + V L+ +Q++ RYA ++ + L E Sbjct: 315 TALKAAQISDSVRIHDLRHTFCSNLVSNNVSLASVQQLANHACYSTTLRYAKVSQDTLRE 374 Query: 360 H 360 Sbjct: 375 A 375 >UniRef50_C6XR20 Integrase family protein n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XR20_HIRBI Length = 402 Score = 172 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 80/356 (22%), Positives = 138/356 (38%), Gaps = 41/356 (11%) Query: 31 KRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRWLEEKADKKSLDSDKS----RIEFW 86 + QA L + K + +K ++ + T + + +K + K Sbjct: 73 RSQATLLLLQLKQGIDPRKKTNEI-NYTIASYFEVFCGQTNGRKKPRTIKLEESLFKRHI 131 Query: 87 LEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTK 146 H ++LK+++ I + +S++ N + K K + P T Sbjct: 132 SPHLGKVKLKELNTTHISNFMSKVANPDKIIVEKTKPRGKAVVSGGKP----------TA 181 Query: 147 AKHLAMIKAILRAAERDWKWLEKAPVIKIPAVR-NKRVRWLEKEEAKRLIDECPEPLKS- 204 + ++ A+L A + L+K P + R K+ R+L + E +RL E + Sbjct: 182 NRAHDILSAMLNHAVKA-GLLDKNPAKNVAKFRTEKKERFLTEVEIQRLGQELRQAGSDG 240 Query: 205 -------VVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACK 257 +K + TG RKS I++L W+ ID QR +A N +SK++ + L Sbjct: 241 TNTYAIEALKVLMFTGARKSEILSLRWEYIDWQRSLA--NLPDSKNDMK-SIVLPSVVIS 297 Query: 258 VLRDQIGKH-HKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDL 316 +L + K + WVF G + W A + D R HDL Sbjct: 298 ILNNLPNKGTNGWVFPSNDGNTHFTGL------------QKIWNRIRTNANLRDVRIHDL 345 Query: 317 RHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIFGDNV 372 RHT+AS G L +L + + +RYAHLA + L I + D++ Sbjct: 346 RHTFASVGAAEGKSLYILGKALTHANPATTQRYAHLADDPLRHAVEAISNKIDDSL 401 >UniRef50_C9AMW3 Phage integrase n=8 Tax=Enterococcus faecium RepID=C9AMW3_ENTFC Length = 378 Score = 172 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 62/397 (15%), Positives = 142/397 (35%), Gaps = 57/397 (14%) Query: 2 SLFRRNEIWYA---SYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 + +R + WY + G ++ E +G + +A+ K +++ + D Sbjct: 4 GVRKRGKRWYYYFEDINDDGSRKKVEKVGGDTRPEAEAALRKVLSDIDETGQYFLGTDTR 63 Query: 59 FEEACLRWLEEKAD----KKSLDSDKSRIEFWLE-HFEGIRLKDISEAKIYSAVSRMHNR 113 ++ W++E + ++ + I+ + + +L D+S A + + ++ Sbjct: 64 VKQYLDFWMKEYVKLNLKYNTYENYRFTIKNHINGYLGKKKLTDLSPALLQNFINAEF-- 121 Query: 114 KTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV- 172 K S +T +++K L A W +++ P+ Sbjct: 122 ------------------------KKGYSKKTMTITHSVLKNALNMAVYPWGLIKQNPML 157 Query: 173 -IKIPAVR-----NKRVRWLEKEEAKRLIDECPE--PLKSVVKFALATGLRKSNIINLEW 224 +KIP K ++ + E+ +++ PE P + TG+R + L W Sbjct: 158 YVKIPKYEERPTTKKDLKIISLEDFDHMLEITPEGHPFYIPLNIGFYTGMRVGEVCGLTW 217 Query: 225 QQIDMQRRVAWVNPEESKSNRA------------IGVALNDTACKVLRDQIGKHHKWVFV 272 +D V + K++ A + + T +L+ + + Sbjct: 218 DNVDFSNGTITVEKQMVKNDGAWVYGTPKTSSSNRTIFIGQTLLAILKKHKKQQLENRMK 277 Query: 273 HTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIE-DFRFHDLRHTWASWLIQSGVPL 331 + K ++ T + S W + + F FH LRHT A+ L+++G + Sbjct: 278 YGKLYIDSNAVCTKEDGGLVTPSVVKWNTRRISNALSLSFNFHSLRHTHATLLLENGAKM 337 Query: 332 SVLQEMGGWESIEMVR-RYAHLAPNHLTEHARKIDDI 367 + E G I + Y+H+ + ++++ Sbjct: 338 KEISERLGHSRISITMDTYSHVTDKMRNQTVDIMENL 374 >UniRef50_Q04676 Rci protein n=10 Tax=Enterobacteriaceae RepID=Q04676_ECOLX Length = 374 Score = 172 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 65/310 (20%), Positives = 122/310 (39%), Gaps = 46/310 (14%) Query: 56 DVTFEEACLRWLEE-KADKKSLDSDKSRIEFWLEH-FEGIRLKDISEAKIYSAVSRMHNR 113 +T A ++L+ KK + R+ H + DI+ I + + Sbjct: 9 KMTISRALDKYLKTVSIHKKGHLQEFYRVNVIKRHPIAERYMDDITTVDIANYRDQ---- 64 Query: 114 KTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV- 172 + ++ + ++ T LA++ ++ A +W PV Sbjct: 65 ---------------RLAQINPRTGRQITGNTVRLELALLSSLFNIARVEWGTCRMNPVE 109 Query: 173 -IKIPAVRNKRVRWLEKEEAKRL---IDECPEPLKSVVKFALATGLRKSNIINLEWQQID 228 ++ P + + R R L E +RL E + L + AL T +R+ I++L W+ +D Sbjct: 110 LVRKPKISSGRDRRLTSGEERRLSRYFKEKNQALYVIFHLALETAMRQGEILSLRWEHVD 169 Query: 229 MQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAV 288 +Q VA + +K+ V L+ A L+ + + +F +T + Sbjct: 170 LQHGVAHL--PTTKNGAPRDVPLSRKARNYLQMLPTQLNGNIFSYTSSG----------- 216 Query: 289 RKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGV-PLSVLQEMGGWESIEMVR 347 K++W +A + IE+ FHDLRH S + G + + + G S+ M++ Sbjct: 217 ------FKSAWRTALQELKIENLHFHDLRHEAISRFFELGTLNVIEVAAISGHRSLNMLK 270 Query: 348 RYAHLAPNHL 357 RY HL L Sbjct: 271 RYTHLRAYQL 280 >UniRef50_Q1K3L0 Phage integrase n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K3L0_DESAC Length = 417 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 79/370 (21%), Positives = 143/370 (38%), Gaps = 51/370 (13%) Query: 32 RQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRWLEEKADKKSLDSDKSR---IEFWLE 88 ++AQ + L L + T E+ C + E+ D+ KSR + L Sbjct: 81 QKAQLYRQMIQEGLDPRRTLTERRIKTLEKFCHEYFEDFIDQNHKHPKKSRHMLKRWILP 140 Query: 89 HFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAK 148 F I LK I SR+ + ++I Q R+ +S T + Sbjct: 141 VFGHIPLKQID--------SRLVSEFVQQILTTVSQKTERR-----------ISGSTAKQ 181 Query: 149 HLAMIKAILRAAERDWKWLEKAPV--IKIPAVRNKRVRWLEKEEAKRLIDEC-----PEP 201 L+++ + + A D ++ P ++ P V R R+L +E R I Sbjct: 182 ALSLLSKLFQCAI-DQHLVDANPCDGVRRPKVNRSRERYLSGDEYPRFIKATMSLIDRPQ 240 Query: 202 LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLR- 260 K+++ A+ GLR S ++ L W + + + +++K+ + V LN A +L+ Sbjct: 241 AKAIMILAVL-GLRPSEVLGLAWCDVHLIDNRIHI--KQAKNGESRFVTLNSVARDLLQQ 297 Query: 261 --DQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRH 318 D K WVF + S ++ C A + +F +DLR Sbjct: 298 LYDARKKRAVWVFPSRGKSSTGHLQSV----------SKTFERICNMAELPEFNLYDLRR 347 Query: 319 TWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLT-----EHARKIDDIFGDNVP 373 + A++L+QSGV L ++E +++ YA ++ + R ++ I G P Sbjct: 348 SHATFLLQSGVDLFTIKEALHHKTLASTMVYARVSSESMVNANELAAQRALEAISGQFEP 407 Query: 374 NMSHSEIMED 383 + E E Sbjct: 408 SGEGCEGCEG 417 >UniRef50_B0PGN2 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0PGN2_9FIRM Length = 526 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 89/405 (21%), Positives = 154/405 (38%), Gaps = 53/405 (13%) Query: 2 SLFRRNEIWY-----ASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPD 56 S+ +RN+ + Y G R K L K KR+ QE + + + + P+ Sbjct: 11 SVRQRNDGRWEGRVVIGYDEKGLPRTKNVLA-KTKRECQEKLKQLRETMTGSKTEKVRPE 69 Query: 57 VTFEEACLRWLEEKADKKSLDSDKSRIE-----FWLEHFEGIRLKDISEAKIYSAVSRMH 111 + F E W + + + ++ E + I L +++ + +RM Sbjct: 70 MPFGEWLDFWYQNYVKPQIRPTTQANYEAKIYQHIIPELGKIPLNQLAQKDLQQFYARMK 129 Query: 112 NRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAP 171 +Q K +S A ++ L A ++ + P Sbjct: 130 TAGRLIRTEQF---------------GKGLSDSMVRGLHAACRSALEKAVQE-GLIRTNP 173 Query: 172 VI--KIPAVRNKRVRWLEKEEAKR-LIDECPEPLKSVVKFALATGLRKSNIINLEWQQID 228 + K+P R + ++ L +EE +R LI E + L TGLR+ ++ L+W +D Sbjct: 174 AVGCKLPPKRGREMQVLGREELQRFLIQAQAEGYFELFLLDLCTGLRRGELLALQWDDLD 233 Query: 229 MQRRVAWVNPE--ESKSNRAIGVA----------LNDTACKVLRDQIGK-HHKWVFVHTK 275 + VN + E K + V L +VLR +W+F Sbjct: 234 FRTGALTVNKQVYEVKGRLQVSVPKTRASIRRLVLPPGVVEVLRAYRETVDSRWMFPSP- 292 Query: 276 AAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQ 335 + D TP + R+ RAG + RFHDLRHT+A+ +++G+ + L Sbjct: 293 --VKEDVPMTPGAVRRRLQI------ILERAGCKRIRFHDLRHTFATLSLENGMDVKTLS 344 Query: 336 EMGGW-ESIEMVRRYAHLAPNHLTEHARKIDDIFGDNVPNMSHSE 379 M G + + Y H+ + +E A KID G+ V S E Sbjct: 345 AMLGHVSAATTLDIYTHVTGDMQSEAAAKIDRGLGNEVREESAQE 389 >UniRef50_C6XDT3 Integrase family protein n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6XDT3_METSD Length = 338 Score = 171 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 84/375 (22%), Positives = 151/375 (40%), Gaps = 56/375 (14%) Query: 3 LFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLP--DVTFE 60 L RN IW P G ++++S T DK AQ+LHDK ELW + ++T + Sbjct: 2 LVLRNGIWQIHLMKPDGSKLRQSSKTTDKVLAQKLHDKISTELWEGRWIDRNQSGNMTLD 61 Query: 61 EACLRWL-EEKADKKSLDSDKSRIEFWLEHFEG-IRLKDISEAKIYSAVSRMHNRKTKEI 118 A + + + ++S S + ++ +G +L +I+ A+++ + M + + Sbjct: 62 AAFDKVMAQRWEKQRSWFSVIHNYNRFKKYLKGSTKLSEITRARLWEVIGEMREDEYTD- 120 Query: 119 WKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAV 178 T + +A+I IL+ A DW+ + K P + + V Sbjct: 121 -------------------------GTINRSMAVISTILKTARDDWEVIVKIPKVPLLKV 155 Query: 179 RNKRVRWLEKEEAKRLID----ECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVA 234 R+RWL+ +E ++ + + +++ L TG R S I+ L+ + + R Sbjct: 156 GRGRMRWLKDDEELPFLEWFRKQGDHDMVDLIEVLLETGCRVSEILRLKDTDVHINERRL 215 Query: 235 WVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRID 294 ++ +KS L++ A ++ +R P R Sbjct: 216 YL--GITKSGEEEYQPLSEYALQIF-----------------LRRYKIGVPPFEGVSRWG 256 Query: 295 SKTSWLSACRRAGIEDFR---FHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAH 351 + + + +A R G D H +RHT AS L+QSGV L +QE + I YA Sbjct: 257 ALSRFQTAKRHLGYADDHELVLHTMRHTCASRLVQSGVDLKRVQEYMRHKDINTTLIYAK 316 Query: 352 LAPNHLTEHARKIDD 366 L+ + A D Sbjct: 317 LSSEENAKTASVFDK 331 >UniRef50_B0KAT2 Phage integrase family protein n=7 Tax=Clostridia RepID=B0KAT2_THEP3 Length = 373 Score = 171 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 78/400 (19%), Positives = 162/400 (40%), Gaps = 64/400 (16%) Query: 3 LFRRNEIWYASYSL---PGGKRIKE-SLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 + +R + + GKR ++ G K K++A++ + A++ + E + + +T Sbjct: 5 IRKRGSTYSIVVDVGRDENGKRKQKWISGFKTKKEAEKALAEIIAKIEKNEFI-EPSKIT 63 Query: 59 FEEACLRWL----EEKADKKSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMHNR 113 ++ WL E K K+L S+KS I+ + + + I L+ + +I + + + Sbjct: 64 LQQFINEWLKIYGEPKWAPKTLVSNKSLIDNYIIPNLGHIELQKLKPVEIQKFYNSLKEK 123 Query: 114 KTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV- 172 + +S T ++ +L+ A + W+++ K P Sbjct: 124 Q--------------------------LSNTTINYVHRLLNQVLKFAVK-WQYIAKNPCE 156 Query: 173 -IKIPAVRNKRVRWLEKE---EAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQID 228 ++ P K E +AK++ + P + V AL TGLR I L W+ ID Sbjct: 157 LVEAPKKDKKEFVTWNFEHVKKAKKIFKDTPIYIH--VMIALYTGLRLGEICGLRWEDID 214 Query: 229 MQRRVAWVNP-------------EESKSNRAIGVALNDTACKVLRDQIGK--HHKWVFVH 273 + + V ++++++ I +++ D ++L+ + K +K +F Sbjct: 215 FKNQTITVRRTAQRIDGRFIFKEPKTETSKGI-ISIPDFLVQILKQEKNKQLQNKLIFGE 273 Query: 274 TKAAKRADGTST---PAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVP 330 + S ++ +K +++ I RFHDLRHT A+ +++SGV Sbjct: 274 KYITEYEGFISVWEDGRFKEPDYVTKKFRKILKKQSDIPVIRFHDLRHTHATLMLRSGVD 333 Query: 331 LSVLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIFG 369 L ++ + I Y+H+ E RK++ Sbjct: 334 LKIISKRLRHGRISTTADFYSHVDLEMDREALRKLESNLS 373 >UniRef50_C2Z776 Prophage LambdaBa04, site-specific recombinase, phage integrase n=10 Tax=Bacillus cereus group RepID=C2Z776_BACCE Length = 379 Score = 171 bits (432), Expect = 6e-41, Method: Composition-based stats. Identities = 74/397 (18%), Positives = 138/397 (34%), Gaps = 64/397 (16%) Query: 5 RRNEIWYASYSL-----PGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTF 59 +R + W + + G ++ K G + K++AQ E+ + D Sbjct: 7 KRGDKWSFTIDVGIDPMTGKRKQKSKGGFRTKKEAQNAAANMITEIEKGMYFDDKQ---- 62 Query: 60 EEACLRWLEEKADKK------SLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMHN 112 W + K +K S + D S ++ + L F ++K I I S + + Sbjct: 63 LSVLDIWGKLKPIRKAELKITSYEKDMSLVKLYILPTFGYKKIKSIKPVIIQSYYAELKE 122 Query: 113 RKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV 172 K +S T + + I + A +W+ L + Sbjct: 123 --------------------------KGLSNGTISNIHRCFRCIFKHAV-EWEILHDNIM 155 Query: 173 --IKIPAVRNKRVRWLEKEEAKRLIDECPEP---LKSVVKFALATGLRKSNIINLEWQQI 227 +K P ++ +E R + E A+ TG+R+ ++ L W+ I Sbjct: 156 NKVKKPREEQGEMKTWSSKECNRFLHYLKEKNKKYYIFFLLAIYTGMRRGELLALTWKDI 215 Query: 228 DMQRRVAWVNPEESKSNRAIGVALNDT------------ACKVLRDQIGKHHKWVFVHTK 275 D + VN K+ + A T L+ K F Sbjct: 216 DFDNKRILVNKSLVKTEEGLFKAATKTKSSNRSISISSFVVTELQSYYAYKKKEFFRWGI 275 Query: 276 AAKRADGTSTPAV--RKMRIDSKTSWLSA-CRRAGIEDFRFHDLRHTWASWLIQSGVPLS 332 + ID+ +L ++AG+ R HDLRHT A+ ++Q+G Sbjct: 276 HLNEEAYIFAGNTIHSPLHIDAPHRFLKDHYKKAGVPRIRIHDLRHTHATLMLQAGEHPK 335 Query: 333 VLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIF 368 ++Q+ G SI+M +Y+H+ N + A +++ Sbjct: 336 IVQDRLGHSSIQMTLDKYSHITQNMQQQAAENFENVI 372 >UniRef50_B6R5P1 Phage integrase n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R5P1_9RHOB Length = 365 Score = 171 bits (432), Expect = 6e-41, Method: Composition-based stats. Identities = 66/360 (18%), Positives = 138/360 (38%), Gaps = 50/360 (13%) Query: 30 DKRQAQELHDKRKAELWR-----VEKLGDLPDVTFEEACLRWLEEKADKK---SLDSDKS 81 +A+ + ++ + D+T E C +LEE K ++ +DK Sbjct: 27 TTEEARAEAKRVLGDVAHGGDPMAARQARRKDLTVAELCDLYLEEGTATKKASTIATDKG 86 Query: 82 RI-EFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKP 140 RI + + DI + + + +KV + + K Sbjct: 87 RIERHIKPVIGDLLVSDIKANHVRTLL-------------KKVAEGNLPREGVGPVADKL 133 Query: 141 VSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKR-VRWLEKEEAKRLIDECP 199 T ++ + ++ I A + + PV + +++ R+L + E RL + Sbjct: 134 GGKGTASRTVGLLGGIFSFA-NELGYRTDNPVHGVKRFPDQKNQRYLTQSELTRLFELLE 192 Query: 200 EPLKS--------VVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVAL 251 E ++K TG R+ I L+W ++ +++ ++ E+SK+ + + + Sbjct: 193 EIEADGANPKAVKIIKLLALTGARRGEIEQLKWSEVFLEQGT--LHFEDSKTGQK-SIPI 249 Query: 252 NDTACKVLRDQIGKH---HKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGI 308 + +LR+ + +VF ++R DG + + W + G Sbjct: 250 SAAVIGLLREAEQERCIDSPYVFP----SERGDG--------FYVGATKVWRDLRTKFGD 297 Query: 309 EDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIF 368 E R HDLRH++AS + G L ++ + G + +RYAHL+ + L + ++ Sbjct: 298 EKLRMHDLRHSFASLAVAGGASLPMIGALLGHKDTATTQRYAHLSADPLRSISDQVGAKL 357 >UniRef50_P76168 Putative lambdoid prophage Qin defective integrase (Fragment) n=64 Tax=root RepID=INTQ_ECOLI Length = 385 Score = 171 bits (432), Expect = 6e-41, Method: Composition-based stats. Identities = 74/381 (19%), Positives = 145/381 (38%), Gaps = 48/381 (12%) Query: 38 HDKRKAELWRVEKLGD-LPDVTFEEACLRWL---EEKADKKSLDSDKSRIEFWLEHFEGI 93 + K+ +EK G+ D+T +E ++L E + K SL++ ++ I+ L Sbjct: 18 YAKQFPSSRNLEKFGEARQDLTIKELAEKFLALKETEVAKTSLNTYRAVIKNILSIIGEK 77 Query: 94 RLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMI 153 L S ++ K E+ K+ + V +P S T ++ + Sbjct: 78 NLA-----------SSINKEKLLEVRKELLTGYQIPKSNYIVTQP-GRSAVTVNNYMTNL 125 Query: 154 KAILRAAERDWKWLEKAPVIKIPAVRNKR--VRWLEKEEAKRLIDECPEPL-KSVVKFAL 210 A+ + D +L P I ++ R L +EE RLID C K++ ++ Sbjct: 126 NAVFQFGV-DNGYLADNPFKGISPLKESRTIPDPLSREEFIRLIDACRNQQAKNLWCVSV 184 Query: 211 ATGLRKSNIINLEWQQIDMQRRVAWVN---------PEESKSNRAIGVALNDTACKVLRD 261 TG+R + L W+ ID++ + ++++ + L A LR Sbjct: 185 YTGVRPGELCALGWEDIDLKNGTMMIRRNLAKDRFTVPKTQAGTNRVIHLIKPAIDALRS 244 Query: 262 QIG----KHHKWVFVHTKAAKRADGTSTPAVRKMRIDSK--------------TSWLSAC 303 Q+ + VH + R + V + + ++ W +A Sbjct: 245 QMTLTRLSKEHIIDVHFREYGRTEKQKCTFVFQPEVSARVKNYGDHFTVDSIRQMWDAAI 304 Query: 304 RRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMV-RRYAHLAPNHLTEHAR 362 +RAG+ + + RHT+A W + +G + + G +MV + Y + Sbjct: 305 KRAGLRHRKSYQSRHTYACWSLTAGANPAFIANQMGHADAQMVFQVYGKWMSENNNAQVA 364 Query: 363 KIDDIFGDNVPNMSHSEIMED 383 ++ + P M H+E M++ Sbjct: 365 LLNTQLSEFAPTMPHNEAMKN 385 >UniRef50_Q1GIK7 Phage integrase n=5 Tax=Rhodobacteraceae RepID=Q1GIK7_SILST Length = 334 Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats. Identities = 77/367 (20%), Positives = 151/367 (41%), Gaps = 56/367 (15%) Query: 6 RNE--IWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKL-GDLPDVTFEEA 62 R +++ GGKR + SL + + +A+ +++R E L T + Sbjct: 10 RGGFCVYWHE----GGKRRRYSLKARTREEAEPEAI----DVYRRETLDQRRGRDTVADI 61 Query: 63 CLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQK 122 + ++ +K + + + L HF R I+ + ++ Sbjct: 62 WEAYRQDLGEKPTAKTMGYTGKAVLAHFGAYRPDQITT----------------SLCRKY 105 Query: 123 VQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKR 182 V +GK S T L +++ +R A ++ + ++KAP I+ PA + Sbjct: 106 VTNRTAEGK----------SQGTIHTELGHLRSAMRFAVKE-RIIDKAPSIERPAKPTPK 154 Query: 183 VRWLEKEEAKRLIDECP-EPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEES 241 R+LEKEE LID + + AT R +++L W ++D QR + + ++S Sbjct: 155 ERYLEKEEIAALIDAASAPHIALAIHLLFATAGRIGAVLDLTWDRVDFQRGIINLRLDDS 214 Query: 242 KSNRAI-GVALNDTACKVLR-DQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSW 299 K+ + V +N L+ +V + + + + + Sbjct: 215 KTRKGRAIVPMNSGIRAALQTAHDAALSDYVVEYAGGKVK--------------NIRKGF 260 Query: 300 LSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMV-RRYAHLAPNHLT 358 +ACRRA ++ H +RH+ A ++ +GVPL + + G ++ + + YA AP+HL Sbjct: 261 EAACRRAELDGVTLHTIRHSSAVAMVSNGVPLEKVAQYLGHSNVAITYQTYARFAPDHLQ 320 Query: 359 EHARKID 365 + A +D Sbjct: 321 DAAEILD 327 >UniRef50_Q2W123 Integrase n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2W123_MAGSA Length = 363 Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats. Identities = 72/359 (20%), Positives = 139/359 (38%), Gaps = 55/359 (15%) Query: 10 WYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLP--DVTFEEACLRWL 67 W A G ++ K A + E+ R + P +T +A +L Sbjct: 48 WQAKIRRHGFPTQSKT--FDRKTDADAWARSLEGEMDRGAFIDRRPAEQMTLADAIRHYL 105 Query: 68 EEKA-DKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAA 126 + A K D + +R+ +L A+S + ++ ++++A Sbjct: 106 DAVAPTHKGADVEAARLGRFLRE---------EPDLCRYALSNLRTHHIEDYRDRRLEA- 155 Query: 127 IRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKIPAVRNKRVR 184 V+ + + + ++ A+L + R ++ PV ++ P V ++R Sbjct: 156 --------------VAPGSLCREINLLHAVLESVRRRVGLVD-NPVSHVRRPKVNDERDV 200 Query: 185 WLEKEEAKRLIDEC----PEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEE 240 L +E +L+ +K V AL T +R+ ++ L W+ +D+ ++ A + E Sbjct: 201 RLSLDEEAQLLSALDATRNPWIKPFVIVALETAMRRGEMLALRWEHVDLVQQTAHL--PE 258 Query: 241 SKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWL 300 +K+ + V L+ A K L VF + + K +W Sbjct: 259 TKNGKGRTVPLSSRAVKTLEALPRSIGGAVFPVSLDS-----------------LKHAWT 301 Query: 301 SACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTE 359 A RAG+ F HDLRH S L + G + L + G + ++M++RY +L L + Sbjct: 302 RARDRAGLHHFHLHDLRHEATSRLAERGWNILELAAVTGHQDLQMLKRYTNLRAADLAK 360 >UniRef50_Q1MNY2 Integrase n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MNY2_LAWIP Length = 383 Score = 170 bits (431), Expect = 8e-41, Method: Composition-based stats. Identities = 82/388 (21%), Positives = 151/388 (38%), Gaps = 55/388 (14%) Query: 8 EIWYASYSLPGGKRI------KESLG-TKDKRQAQELHDKRKAELWRVEKL------GDL 54 + +Y Y G K++ +ES G T EL VEK Sbjct: 29 KTFYILYRRCGEKKLIEEPVGRESSGMTAATANNIRGLRAIGKELSNVEKRKKEKEKQQN 88 Query: 55 PDVTFEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRK 114 VT + ++ ++KKSL D SR+++ +S + ++ Sbjct: 89 QKVTLQTIWDKYQLIYSEKKSLKQDISRVKY---------------------LSDLMHKS 127 Query: 115 TKEIWKQKVQAAIRKGKELPVYEP-KPVSTQTKAKHLAMIKAILRAAE-RDWKWLEKAPV 172 + + +K + +S + L ++K ++ R+ + Sbjct: 128 PDILTTNDIDTLRKKLTLTKSSKGGASLSPASIKHILVLLKRLINFGIQRNLCIKPQNLY 187 Query: 173 IKIPAVRNKRVRWLEKEEAKRLIDEC----PEPLKSVVKFALATGLRKSNIINLEWQQID 228 I +P V N++ L K + K L+ + + ++ AL TG+RKS ++ L+W D Sbjct: 188 IDMPKVDNQKTEILSKNQLKNLLLALDAEPNQSDVAFIRLALVTGMRKSALLALKWSDCD 247 Query: 229 MQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAV 288 + + ++ +K + + +N++A +L + ++F KR Sbjct: 248 FENNIITLSGNYAKKGKTDYIPMNNSAKSILLSIPKGNSDFIFATRNGTKRTTY------ 301 Query: 289 RKMRIDSKTSWLSACRRAGIE-DFRF-HDLRHTWASWLIQSG-VPLSVLQEMGGWESIEM 345 ++ +A + DFR H LRH +AS L SG V L +Q + E+ M Sbjct: 302 ------NQRLIKRIKEKAKLPKDFRPLHGLRHNFASRLASSGKVDLYTIQRLLTHETPAM 355 Query: 346 VRRYAHLAPNHLTEHARKIDDIFGDNVP 373 +RYAHL + L + A IDD F + + Sbjct: 356 TQRYAHLHNDALKKAAAIIDDEFTETLS 383 >UniRef50_B9MQ70 Integrase family protein n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MQ70_ANATD Length = 325 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 52/312 (16%), Positives = 112/312 (35%), Gaps = 27/312 (8%) Query: 83 IEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVS 142 ++ W+ F I+L+ + + +++ K I Q + + + +S Sbjct: 17 LDIWMNQFMKIKLRPTTYSSYIQLINKHIKPKLGHIQLQNLSPLAIQECYNSLLLEN-LS 75 Query: 143 TQTKAKHLAMIKAILRAAERDWKWLEKAP--VIKIPAVRNKRVRWLEKEEAKRLIDECP- 199 +T +I + L+ A + ++ + + +P V ++ L E+ + Sbjct: 76 PKTVKNIHVIIHSALKQAIK-CGYINQNVSEAVALPKVERPEIKTLSSEQVTTFLQAAQT 134 Query: 200 EPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVN-------------------PEE 240 + L L TGLR+ ++ L+W ID V P + Sbjct: 135 DSLYPAFLLELYTGLRRGELLGLKWDDIDFDNCTIHVKRSLVRVYDHNLKKTTLLLQPPK 194 Query: 241 SKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRI-DSKTSW 299 +K+ + + D L++ +H + T + + + + Sbjct: 195 TKAG-YRVIPIPDFVVAELKELYEEHQRIKLSQPNFNSLNLMFVTTQGTPIDPRNFERKF 253 Query: 300 LSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMV-RRYAHLAPNHLT 358 ++A + + R HDLRHT A+ L+Q V ++QE+ G I Y+H+ Sbjct: 254 KQLLKKANLPNIRLHDLRHTVATLLLQQNVHPKIVQEILGHRDISTTLDIYSHVNIELKK 313 Query: 359 EHARKIDDIFGD 370 + + +I Sbjct: 314 KATSCLVEILNS 325 >UniRef50_B0UKQ5 Integrase family protein n=2 Tax=Rhizobiales RepID=B0UKQ5_METS4 Length = 430 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 86/348 (24%), Positives = 140/348 (40%), Gaps = 21/348 (6%) Query: 30 DKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRWLE-EKADKKSLDSDKSRIEFWLE 88 + RQAQEL R + G +T ++A +L A++KS + R + ++ Sbjct: 80 NFRQAQELARARMVQRAHAAA-GKTGPLTVQDAVEAYLAFLDANRKSGLDARHRAQAFIY 138 Query: 89 HF-EGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKA 147 + ++ ++ AK+ ++ + KT + K A R + E + T Sbjct: 139 PLLGDVEVEALTTAKLSRWLTDLA--KTPPRIRTKAGAEQRYREVPDDDESRRRRRSTAN 196 Query: 148 KHLAMIKAILRAAERDWKWLEKAPVIKIPAVRN---KRVRWLEKEEAKRLIDECPEPLKS 204 + L ++KA L A R + A ++ N RVR+L EA+RLI+ + Sbjct: 197 RTLTVLKAALNRAWRAGQVSSDAAWRRVEPFENVDATRVRYLTVTEAQRLINAADPDFRV 256 Query: 205 VVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIG 264 +V+ AL TG R ++ L + + SKS + + L D + Sbjct: 257 LVQGALQTGARYGELVALRVADFNPDSGTLSIR--RSKSGKPRHIVLTDEGAAFFARHVA 314 Query: 265 KHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGI-EDFRFHDLRHTWASW 323 + KA+ A G+S ACR I FH LRHTWAS Sbjct: 315 GRAGSDLMFVKASGAAWGSSHQL---------RPMADACRNGRITPWISFHGLRHTWASL 365 Query: 324 LIQSGVPLSVLQEMGGWESIEMVRR-YAHLAPNHLTEHARKIDDIFGD 370 + + PL V+ G MV + Y HLAP+++ E R FG+ Sbjct: 366 AVMNSTPLMVVARNLGHADTRMVEKHYGHLAPSYVAEAIRAGAPRFGE 413 >UniRef50_P10487 Shufflon-specific DNA recombinase n=21 Tax=root RepID=RCI1_ECOLX Length = 384 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 72/313 (23%), Positives = 123/313 (39%), Gaps = 46/313 (14%) Query: 53 DLPDVTFEEACLRWLEE-KADKKSLDSDKSRIEFWLEHFEGIR-LKDISEAKIYSAVSRM 110 + ++ A ++L+ KK + R + +R + +I+ I + Sbjct: 5 RIRKMSLSRALDKYLKTVSVHKKGHQQEFYRSNVIKRYPIALRNMDEITTVDIATYRD-- 62 Query: 111 HNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKA 170 + E+ KP++ T LA++ ++ A +W Sbjct: 63 -----------------VRLAEINPRTGKPITGNTVRLELALLSSLFNIARVEWGTCRTN 105 Query: 171 PV--IKIPAVRNKRVRWLEKEEAKRLIDECPEP---LKSVVKFALATGLRKSNIINLEWQ 225 PV ++ P V + R R L E +RL E L + AL T +R+ I+ L W+ Sbjct: 106 PVELVRKPKVSSGRDRRLTSSEERRLSRYFREKNLMLYVIFHLALETAMRQGEILALRWE 165 Query: 226 QIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTST 285 ID++ VA + E+K+ + V L+ A L+ H VF +T + Sbjct: 166 HIDLRHGVAHL--PETKNGHSRDVPLSRRARNFLQMMPVNLHGNVFDYTASG-------- 215 Query: 286 PAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSG-VPLSVLQEMGGWESIE 344 K +W A +R IED FHDLRH S + G + + + + G S+ Sbjct: 216 ---------FKNAWRIATQRLRIEDLHFHDLRHEAISRFFELGSLNVMEIAAISGHRSMN 266 Query: 345 MVRRYAHLAPNHL 357 M++RY HL L Sbjct: 267 MLKRYTHLRAWQL 279 >UniRef50_Q1K3L6 Phage integrase n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K3L6_DESAC Length = 397 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 74/394 (18%), Positives = 168/394 (42%), Gaps = 63/394 (15%) Query: 1 MSLFRRNEIWYASYSLPGGKRIKESLG---TKDKRQA---QELHDKRKAE-LWRVEKLGD 53 +++++ + GKR+ ++G ++A + A+ + ++ Sbjct: 41 LAVYKNGSRSWRFKQKFRGKRLFITIGPYPLFSLQEAIDKTRHFKRLIADGIDPRQEQQP 100 Query: 54 LPDVTFEEACLRWLEEKADK--KSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRM 110 +T + + A K K+ + ++ ++ ++ F L DIS+ ++ ++ Sbjct: 101 QSQLTLAQFVEQDFLPYARKHYKTFHNQQNMLDKRIIKTFGATPLADISKREVMLFHQQV 160 Query: 111 HNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKA 170 + S T +HL+++ +I + A ++ LEK Sbjct: 161 CDET---------------------------SGTTGNRHLSLLSSIFKLAL-EYDLLEKN 192 Query: 171 PVIKIPAVR--NKRVRWLEKEEAKRLID----ECPEPLKSVVKFALATGLRKSNIINLEW 224 P I + R R+L+++E R I + +P + +A G+RKS +++L W Sbjct: 193 PCRGIKKAKENRSRDRFLQEDEYTRFIQVLQTKLDQPSACAIFLLIALGMRKSELLSLRW 252 Query: 225 QQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVL---RDQIGKHHKWVFVHTKAAKRAD 281 + + + R ++ ++K+ + VALN + +L + + + WVF +++ Sbjct: 253 EDVSLADR--HLHLRDTKNGESRYVALNSVSHGLLTKMKQKRKASNPWVFPSRTSSESGH 310 Query: 282 GTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWE 341 D + ++ + CR + I R HDLR + AS L+ +GV +S++ ++ G + Sbjct: 311 ----------LQDVRRTFATVCRESKITGLRIHDLRRSHASHLLNAGVDISIVGKILGHK 360 Query: 342 SIEMVRRYAHLAPNHLTE----HARKIDDIFGDN 371 S++ + YA +A + L +RKI+++ Sbjct: 361 SLKSTQIYAKVATSSLARTSEIASRKIEEVMNQA 394 >UniRef50_A6FWH8 Site-specific recombinase XerD-like protein n=1 Tax=Roseobacter sp. AzwK-3b RepID=A6FWH8_9RHOB Length = 316 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 67/240 (27%), Positives = 106/240 (44%), Gaps = 12/240 (5%) Query: 140 PVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV---IKIPAVRNKRVRWLEKEEAKRLID 196 + T KH+ ++ +L A + P +K V + + R+L +E +RLI Sbjct: 82 GLQRSTINKHIYLMNRMLNLARHWCLVPAQNPDQQPLKRLVVGDYKQRFLSADEIQRLIA 141 Query: 197 ECP----EPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALN 252 C L V+ L TG RK W+ +D+ +R+ V SK+ R+ + LN Sbjct: 142 ACRRSSHPYLHHFVQILLLTGARKGEARTALWRDVDLDKRIWTV--PRSKNGRSRRILLN 199 Query: 253 DTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFR 312 A + + + + P + +W A +A +ED R Sbjct: 200 TNAVDSFNAIRRTAER---LQQPTLPTSFVFTNPRTGRAYDSFYAAWYVARDQAKLEDVR 256 Query: 313 FHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIFGDNV 372 HDLRHT+AS LI GV L +Q + G S++M +RYAHLAP+ L A + I G ++ Sbjct: 257 IHDLRHTFASLLINKGVSLYEVQTLLGHSSVQMTQRYAHLAPDRLHSRAEIVSGIVGKSI 316 >UniRef50_B1FJ84 Integrase family protein n=1 Tax=Burkholderia ambifaria IOP40-10 RepID=B1FJ84_9BURK Length = 332 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 87/361 (24%), Positives = 144/361 (39%), Gaps = 58/361 (16%) Query: 10 WYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLP--DVTFEEACLRWL 67 W A L G +S K QA++ + E+ R + + T + ++ Sbjct: 16 WQAKVRLKGFPAQSKS--FPTKVQAEDWARAVETEMRRGTFVDTAAARETTLGDLLQKYA 73 Query: 68 EEKA-DKKSLDSDKSRIEFWLEHFE-GIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQA 125 E + KKS + RI+ L+ F + +I+ A + Sbjct: 74 ERVSPTKKSGAGEAKRIQSMLKWFLCKYAVVNITPAVLAEWRDE---------------- 117 Query: 126 AIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKW-LEKAPV--IKIPAVRNKR 182 + VS T + L ++ + A +W L PV I+ P R Sbjct: 118 -----------RLQSVSGSTVNRELNLLSHVFSTAMIEWDIHLPVNPVSRIRRPKHNKPR 166 Query: 183 VRWLEKEEAKRLIDEC----PEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNP 238 R E E L+ EC + L V A+ TG+R+S ++ +EW ID++RRV W+ Sbjct: 167 NRRTEGGEESLLLYECRKARNKHLYPAVLLAIETGMRRSEVVGIEWPNIDLKRRVLWL-- 224 Query: 239 EESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTS 298 +SK+ VAL+ A + L + VF G + A+ K + Sbjct: 225 PDSKNGEGRAVALSTRAAQALAAIATDRNGPVFP---------GLTVDAI-------KCA 268 Query: 299 WLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLT 358 + A +RA I+ RFHDLRH S L + G+ + + G +++ M++RY HL L Sbjct: 269 YRRARKRAKIDGLRFHDLRHEATSRLFEKGLNPMEVASITGHKTLSMLQRYTHLRAEDLA 328 Query: 359 E 359 + Sbjct: 329 K 329 >UniRef50_A1WTV4 Phage integrase family protein n=1 Tax=Halorhodospira halophila SL1 RepID=A1WTV4_HALHL Length = 379 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 68/310 (21%), Positives = 142/310 (45%), Gaps = 31/310 (10%) Query: 68 EEKADKKSLDSDKSRIEF-WLEHFEGIRLKDISEAKI--YSAVSRMHNRKTKEIWKQKVQ 124 EEK +++ + K E +L H + + ++ + + A+ + +K +I + +V+ Sbjct: 87 EEKNTRRASPTLKEYAEECYLPHAKSYKRSWKTDEIMLNHHALPTLGTKKMSDINRNQVE 146 Query: 125 AAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAE-RDWKWLEKAPV--IKIPAVRNK 181 A + K + + T + L +I + + A + + P IK P + NK Sbjct: 147 AIMNDMKS------RGYAPSTVDRVLTLISYMFKVAMDNEIPGVVSNPTEKIKRPVIDNK 200 Query: 182 RVRWLEKEEAKRLIDECP----EPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVN 237 +L +EE R+++ + S+++ A+ TG RK+ I++ ++ D+ ++ + Sbjct: 201 IENYLTREEVNRMLEAARRRNHPHIYSIIRMAVLTGARKAEILSARFEDFDLDNKIWNIP 260 Query: 238 PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKT 297 ++ S + I L + A +++++ + + P K + Sbjct: 261 KGKNGSRKVI---LAEKAVQMVKELPKQEGTDLL-----------FPQPGTDKPYQCIQK 306 Query: 298 SWLSACRRAGI-EDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNH 356 + + R +GI E RFHDLRH++AS L+Q GV + ++E+ G I RYAHL+ Sbjct: 307 PFKAVLRDSGIDESVRFHDLRHSYASLLVQGGVNIYEVKELLGHSQITTTMRYAHLSAQG 366 Query: 357 LTEHARKIDD 366 L H+ ++ + Sbjct: 367 LRNHSNRLAE 376 >UniRef50_A4J1T6 Phage integrase family protein n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J1T6_DESRM Length = 383 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 76/392 (19%), Positives = 148/392 (37%), Gaps = 53/392 (13%) Query: 5 RRNEIWYASYSLPGG-----KRIKESLGTK-DKRQAQELHDKRKAELWRVEKLGDLPDVT 58 +R++ + G KR + G K K++A++ + AE + + + Sbjct: 7 KRHKSSWTIIIDLGKDPITNKRKRMVRGFKGTKKEAEKEMARLIAEYETGQYI-EPSKTC 65 Query: 59 FEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEI 118 + LRWLE+ + +E K I + + ++ + Sbjct: 66 LGDYMLRWLEDYGKPNLAPTTYYSYSKIVE-------KHIIPSIGSIIIEKLQPMHLQRY 118 Query: 119 WKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKIP 176 + QK+Q +S +T H ++K L A + W+ L + P ++ P Sbjct: 119 YSQKLQ---------------TLSNRTVQYHHRVLKEALSHAVQ-WQLLNRNPADAVQAP 162 Query: 177 AVRNKRVRWLEKEEAKRLIDECPEPLKSVVKF-ALATGLRKSNIINLEWQQIDMQRRVAW 235 + K + + R+I + ++ A+ TG+R+ ++ L WQ +D + + + Sbjct: 163 KNKQKEIELPDLSNIDRMIQASKDHPDHIIIISAVFTGMRRGELLGLRWQDLDFDKNLLY 222 Query: 236 VN---------------PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRA 280 V P+ KS R I + +L+D K + F + Sbjct: 223 VRNTLQRLPDKGKFFTEPKSKKSRRQIIIP--HFLTNLLKDHRKKQLEERFKLGHLYQDH 280 Query: 281 DGTSTPAVRKM--RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMG 338 D + + + G+ RFHDLRH A+ L+ + +QE Sbjct: 281 DLVFPRPDGTPADPGTVSHRFKALVDKIGLSGLRFHDLRHFHATLLLAENINPKKVQERL 340 Query: 339 GWESIEMV-RRYAHLAPNHLTEHARKIDDIFG 369 G ++I + Y+HL P+ E A K+++I+G Sbjct: 341 GHQTISLTLDVYSHLIPSMQNEIAEKLEEIYG 372 >UniRef50_A8LM37 Integrase family protein n=3 Tax=Rhodobacterales RepID=A8LM37_DINSH Length = 388 Score = 169 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 69/316 (21%), Positives = 117/316 (37%), Gaps = 35/316 (11%) Query: 69 EKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSR-----MHNRKTKEIWKQKV 123 E ++ S + + ++ + + + S A S + R + E+ + + Sbjct: 92 EAQARRKAKSMRDLADDYMTNHALPKKRPRSAAMDRSLLDRVVLPAFGRQSVDEVSHKDI 151 Query: 124 QAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAV-RNKR 182 Q ++ P + LA++ + A R W PV +P KR Sbjct: 152 QRLHNSLRDTPYQA---------NRVLALLSKMFELAIR-WGLRGDNPVKGVPRFAEEKR 201 Query: 183 VRWLEKEEAKRLIDEC----PEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNP 238 RWL E RL + + + ++ L TG R ++ +W D+ R V Sbjct: 202 YRWLSDNELDRLREALDAHPNQRAANAIRLQLLTGARTGEVLTSQWSDFDLDRGVWVKPS 261 Query: 239 EESKSNRAIGVALNDTACKVLRDQ---IGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDS 295 +K R + L+ +LR +VF K D Sbjct: 262 HHTKQKRTEHLPLSAATVALLRSIAHGRTDDSPFVFPGRKPGHPIK------------DL 309 Query: 296 KTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPN 355 K W S AG++D+R HD RHT AS L+ SG L ++ + G + +RYAHLA + Sbjct: 310 KRFWTSVTSTAGLKDYRLHDNRHTHASHLVSSGHSLPIVGRLLGHTNPMTTQRYAHLADD 369 Query: 356 HLTEHARKIDDIFGDN 371 L + A + + Sbjct: 370 PLRQAAEVMGQKLTNT 385 >UniRef50_B1VP49 Putative phage integrase n=1 Tax=Streptomyces griseus subsp. griseus NBRC 13350 RepID=B1VP49_STRGG Length = 423 Score = 169 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 84/402 (20%), Positives = 152/402 (37%), Gaps = 37/402 (9%) Query: 2 SLFRRNEIWY---ASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 ++ +R + Y A P G R ++ K + + + + E+ R + Sbjct: 11 TITKRKDGRYQAAAYVFRPDGTRTRKFAYGKTREEVASQLTEMQ-EMTRQGIPAASSTMA 69 Query: 59 FEEACLRWLEEKADKK----SLDSDKSRIEFWL-EHFEGIRLKDISEAKIYSAVSRMHNR 113 F + WL A ++ +L+S + ++ RL +S A + ++ Sbjct: 70 FGDYLTYWLATIAPERLKPATLNSYEGLSRLYIRPALGKKRLNRLSPADVRRFLAEFKAA 129 Query: 114 KTKEIWKQKVQ--AAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKA- 170 + + R + + S +T A++++ L+ A R+ + + + Sbjct: 130 CLCCLRGADEERPEDKRTCCAVGRCCKRRPSARTVQYIHAVLRSALQQAIRE-ELIARNV 188 Query: 171 -PVIKIPAVRNKRVRWLEKEEAKRLID-ECPEPLKSVVKFALATGLRKSNIINLEWQQID 228 +++ P V K VR L+ E + L+ P L ++ ++TGLR+ + L W +D Sbjct: 189 ARIVETPTVEPKEVRPLDAAEVRLLLKTARPHRLYALWLLLVSTGLRRGEALGLTWADVD 248 Query: 229 MQRRVAWVN-----------PEESKSNRA-IGVALNDTACKVL--------RDQIGKHHK 268 + V K+ R+ ++L + + L R+Q K Sbjct: 249 LTAGTLRVRRNVQRIRRELIFGTPKTMRSVRTISLPKSCVQALTAHRTQQEREQKVAGAK 308 Query: 269 WVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSG 328 W + A T T V R CR A + R HDLRHT AS L+ G Sbjct: 309 WQQTPGQPAGLVFTTLTGRVTDPR-SLNRMLTILCRDAKVRRVRVHDLRHTCASLLLAQG 367 Query: 329 VPLSVLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIFG 369 V + E G +I M YAH+ + L A ++DD G Sbjct: 368 VDARTIMETLGHSTITMTLDTYAHVMGSTLRAAAEQMDDALG 409 >UniRef50_A6SV87 Site-specific recombinase, phage integrase family n=1 Tax=Janthinobacterium sp. Marseille RepID=A6SV87_JANMA Length = 328 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 72/364 (19%), Positives = 142/364 (39%), Gaps = 55/364 (15%) Query: 3 LFRRN-EIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEE 61 + +R + + A + G + ++ TK +R + R + ++T Sbjct: 4 IRKRAADQFQARVRIKGNPELSKTFSTKAAAVHWADEQERLVKQGRGSAILLANNLTITA 63 Query: 62 ACLRWLEEKAD-KKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 A R+ E KK + R+ W + L ++ + ++ + + Sbjct: 64 ALDRYAREVTPLKKGWKQELVRLRRWQSN----PLAQLT-------MPQLRAAELAKYRD 112 Query: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKW---LEKAPVIKIPA 177 Q++ + T LA+I + A +DW + +I+ P Sbjct: 113 QRLS--------------DGLGANTVRLELALISHVYEVAIKDWGLEVLINPVRIIRKPK 158 Query: 178 VRNKRVRWLEKEEAKRLIDECPEP----LKSVVKFALATGLRKSNIINLEWQQIDMQRRV 233 + R R L + E L++ C + L+ V+ AL T +R+ I +L + ID+ R+ Sbjct: 159 LPRGRERRLTEGEEDLLLEYCKKKGAALLRLVIILALETAMRRGEIASLHTENIDLDSRL 218 Query: 234 AWVNPEESKSNRAIGVALNDTACKVLRDQI-GKHHKWVFVHTKAAKRADGTSTPAVRKMR 292 ++ +++K+ V L+ A K L + + GKH + V +H Sbjct: 219 IFL--DQTKNGDKRKVPLSRRAQKELENYLCGKHGELVPLHPD----------------- 259 Query: 293 IDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHL 352 + ++ AC+ GI HDLRH S L + G + + + G +++ M++RY HL Sbjct: 260 -NISGAFSQACKVCGISGLTLHDLRHEATSRLFEKGFNMMEVAAITGHKTLTMLKRYTHL 318 Query: 353 APNH 356 Sbjct: 319 DTAD 322 >UniRef50_Q11LX6 Phage integrase n=1 Tax=Chelativorans sp. BNC1 RepID=Q11LX6_MESSB Length = 333 Score = 168 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 79/358 (22%), Positives = 146/358 (40%), Gaps = 56/358 (15%) Query: 1 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFE 60 + L++R E+W+ ++ G+R+ S T DK AQ L ++ +A+ ++ + G +TF Sbjct: 3 LKLYKRGEVWWYRGTVA-GRRLHASAKTTDKEIAQRLANRAEAQAFKRDLDGPASVLTFA 61 Query: 61 EACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 A +L+ + L LEH++ +KDI+ I A +++ + Sbjct: 62 HAVTLYLDAGKSDRFLVP-------VLEHWKETLVKDITAGAIRLAAIKVYPK------- 107 Query: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKH-LAMIKAILRAAERDWKWLEKAPVIKIPAVR 179 S T+ + + A++ A + ++ V Sbjct: 108 --------------------ASPSTRNRQFITPTVAVINHAAS-LELCPPLRKVERFKVP 146 Query: 180 NKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPE 239 K + + E P L ++ F TG R S++ +L W+ ID QRR A + Sbjct: 147 KKHRDEADWDWVLAFEKEAPPHLGALAVFGYLTGARLSSLTDLHWKTIDFQRREAVLW-- 204 Query: 240 ESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSW 299 ++K+ V L L + VF ++ R K++W Sbjct: 205 KTKNGHDHVVHLPPHLVVRLANLTTDRGGKVFGYSS----------------RHSVKSAW 248 Query: 300 LSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMV-RRYAHLAPNH 356 ++ +RAGI+ H LRH +A+ L+++GV + +GGWES ++V Y H + Sbjct: 249 KASIKRAGIKPLTPHALRHGFATGLLRAGVDPVTVAWLGGWESPQIVIDIYGHAMKDR 306 >UniRef50_D1A578 Integrase family protein n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1A578_THECD Length = 409 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 69/411 (16%), Positives = 133/411 (32%), Gaps = 62/411 (15%) Query: 2 SLFRRNEIWYASYSLP----GGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDV 57 + +R W + G + K G + +A+ D+ + + R E + D + Sbjct: 21 GVMKRGSTWSYVIRVRDPETGVSKPKWVGGFVTEEEAKAARDEARVKARRGEYI-DRTTI 79 Query: 58 TFEEACLRWLEEKA---DKKSLDSDKSRIEFWL-EHFEGIRLKDISEAKIYSAVSRMHNR 113 T + WLE A ++L + + ++ H +RL+ + A+I + Sbjct: 80 TVAQYLDEWLEAHAVEIKPRTLAGYHTMVRLYIKPHIGDLRLQAVRPAQITKLYRDLL-- 137 Query: 114 KTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVI 173 KP+S T + A++ A + + P Sbjct: 138 ------------------ASGGEGGKPLSVSTVMRVHAILHKAFADAVLVDELIPSNPAE 179 Query: 174 KIPAVR---NKRVRWLEKEEAKRLIDECPEP-LKSVVKFALATGLRKSNIINLEWQQIDM 229 + + + + + + E L + A TG R+ ++ L W +D+ Sbjct: 180 RAKRPKGLVREADGIWTPAQLRVFLQAVREHRLFAFYHLAAYTGARRGELLALRWSNVDL 239 Query: 230 QRRVAWVNP-----------EESKSNRAIGVALNDTACKVLRDQ---------------I 263 + + +KS R+ V ++D VLR+ Sbjct: 240 DGKRITIGGSAGVVKGRRIEGTTKSGRSRVVTIDDETVAVLREHRKAQLAEQFQAGEAWR 299 Query: 264 GKHHKWVFVHTKAAK-RADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWAS 322 G +VF + D + +R + + R HDLRH A+ Sbjct: 300 GAEDGYVFTTERGEPIHPDSVGWLMTKTIRAYNNPPQGPKPAEP-LPHARVHDLRHIHAT 358 Query: 323 WLIQSGVPLSVLQEMGGWESIEMVRR-YAHLAPNHLTEHARKIDDIFGDNV 372 L+ +GVP+ V+ G + R YAH+ + A + V Sbjct: 359 TLLLAGVPVHVVAARLGHADPAITLRVYAHVIRSAEVAAADVFAKVMSGAV 409 >UniRef50_Q831G3 Site-specific recombinase, phage integrase family n=1 Tax=Enterococcus faecalis RepID=Q831G3_ENTFA Length = 379 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 71/394 (18%), Positives = 139/394 (35%), Gaps = 52/394 (13%) Query: 3 LFRRNEIWYASYSL----PGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 + ++ ++ SL GK+ ++ L K++AQ++ K L+ KL D+T Sbjct: 2 ITKKENGYFVDVSLGIDPISGKQRRKRLTVSTKKEAQQIESKYLR-LYHENKLTTNSDLT 60 Query: 59 FEEACLRWLEEKAD--KKSLDSDKSRI--EFWLEHFEGIRLKDISEAKIYSAVSRMHNRK 114 ++ + E+ K S + RI + +F+ ++K I + +IY + K Sbjct: 61 LKDIYEVYEEKYTQNLKPSYKQTQERIFKNYIEPYFKNTQIKLIKKQQIYDFQQFLLTSK 120 Query: 115 TKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV-- 172 K + +S +T + ++ + A ++ + P Sbjct: 121 PK--------------------RKETLSNKTINMIIIHLQKLFNVAMKE-GLSYENPCNQ 159 Query: 173 IKIPAVRNKRVRWLEKEEAKRLIDECPEP---LKSVVKFALATGLRKSNIINLEWQQIDM 229 I V+ K + + +E I + LK +FA TG+R +I L W ID Sbjct: 160 IDKLKVQKKEIDFWTLDEFTTFISHIDKNKPFLKVFYQFAFFTGMRAGEMIALTWSDIDF 219 Query: 230 QRRVAWVNP-----------EESKSNRA-IGVALNDTACKVLRDQIGKHHKWVFVHTKAA 277 + +N K+ + + +N +L+ K + + + Sbjct: 220 YNQTVRINKSAKLINGNYVTTTPKTESSNRYITINSKITAMLKKWQEIQPKLLIDNFQNI 279 Query: 278 KRADGTSTPAVRKM----RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSV 333 K + + ++ R HD RH+ + LI + + Sbjct: 280 DSDKLLVFQYSEKHPSSDYYSKQIKKIIVKNNLNLKPIRLHDFRHSHVALLIHNNEKNTT 339 Query: 334 LQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDD 366 ++E G SI Y HL PN + K D+ Sbjct: 340 IKERLGHSSITTTIDTYGHLYPNSQKSMSDKFDN 373 >UniRef50_Q1GLB2 Phage integrase n=12 Tax=Rhodobacterales RepID=Q1GLB2_SILST Length = 411 Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats. Identities = 80/384 (20%), Positives = 141/384 (36%), Gaps = 64/384 (16%) Query: 8 EIWYASYSLPGGKRIKESLGTKDK---RQAQELHDKRKAELWRVEKLGD-----LPDVTF 59 + + A Y GG+ + S+G K +A++L + ++ + E + T Sbjct: 58 KTYQAQYR-KGGRTRRVSVGRHGKITVDEARKLAKEIMGQVAKGENPAEEISQHRKAPTV 116 Query: 60 EEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIW 119 C R+ E A ++ S + ++ F V + + K ++ Sbjct: 117 AALCERFFEAHAKERCKPSTQKEYRRAIDLFI---------------VPALGSFKVVDVE 161 Query: 120 KQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEK--APVIKIPA 177 ++ + K ++ P + L ++ + AE W P +P Sbjct: 162 RRDIAELHHKFRDKPHQA---------NRTLGVLSKMFNLAEI-WGLRPDGSNPCRHVPK 211 Query: 178 VRN-KRVRWLEKEEAKRLIDECPE---------PLKSVVKFALATGLRKSNIINLEWQQI 227 R KR R+L + E +RL E + + + + TG R I L+W I Sbjct: 212 YREVKRERFLSQSELQRLGQVLTEVEREGSETPHMVAAFRLLILTGCRLGEIQTLKWGYI 271 Query: 228 DMQRRVAWVNPEESKSNRAIGVALNDTACKVL-RDQIGKHHKWVFVHTKAAKRADGTSTP 286 +SK+ A + L A VL R H +V + A Sbjct: 272 TANGMEL----PDSKTG-ARRIPLPQPARDVLARLPRTPGHPYVIEGKLPGQYA------ 320 Query: 287 AVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMV 346 D + W RAG+ R HDLRHT+AS + +G+P+ ++ + G I+ Sbjct: 321 ------TDLQHPWRRIRDRAGLCGVRIHDLRHTYASNAVSAGMPIQMVGRLLGHTQIQTT 374 Query: 347 RRYAHLAPNHLTEHARKIDDIFGD 370 RYAHLA + + + A + G Sbjct: 375 MRYAHLADDPVRQAAEENAARLGS 398 >UniRef50_B5K270 Integrase n=1 Tax=Octadecabacter antarcticus 238 RepID=B5K270_9RHOB Length = 389 Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats. Identities = 84/378 (22%), Positives = 145/378 (38%), Gaps = 59/378 (15%) Query: 7 NEIWYASYSLPGGKRIKESLGTK---DKRQAQELHDKRKAELWRVE-----KLGDLPDVT 58 + +Y Y G+ + LG A++L K E+ E K ++T Sbjct: 44 GKSFYL-YKRIDGRPERLLLGKFPDLTVENARKLAASAKGEIAMGENPQKAKRSIRDEMT 102 Query: 59 FEEACLRWLEE--KADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTK 116 F +LE+ K K+S D+ + +L+H+ ++ I + ++ +++ Sbjct: 103 FGALFTEYLEKHSKVHKRSWAYDEREVNKFLKHWFKRKISSIEKPEVERLHAKV------ 156 Query: 117 EIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIP 176 GKE +Y+ + L I++I A DW W P I Sbjct: 157 -------------GKENGLYQ--------ANRLLERIRSIFSKA-TDWGWNGVNPATGIK 194 Query: 177 AVRNK-RVRWLEKEEAKRLIDEC----PEPLKSVVKFALATGLRKSNIINLEWQQIDMQR 231 R K R R+L+ EE R + E + +L G RKSN + + W +I Sbjct: 195 KYREKSRDRFLQPEELPRFFEALSNEPNEVARDFFMISLLAGARKSNTLAMRWDEISFHG 254 Query: 232 RVAWVNPEESKSNRAIGVALNDTACKVLRDQ-IGKHHKWVFVHTKAAKRADGTSTPAVRK 290 + +K++ V L+ A ++L+++ + WVF A+ Sbjct: 255 ETWRI--ARTKNDDPQIVHLSPQAMEILKERKLHSLSPWVFPGDGASGHL---------- 302 Query: 291 MRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYA 350 D K +W+ + AGI D R HDLR T SW +G ++ + G S + YA Sbjct: 303 --ADPKKAWMRILKEAGIADLRIHDLRRTLGSWQAATGANSYIIGKSLGHRSQQSTAVYA 360 Query: 351 HLAPNHLTEHARKIDDIF 368 L + + + K D Sbjct: 361 RLNLDPVRDSVNKATDAM 378 >UniRef50_C9RBE5 Integrase family protein n=1 Tax=Ammonifex degensii KC4 RepID=C9RBE5_AMMDK Length = 414 Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats. Identities = 83/399 (20%), Positives = 150/399 (37%), Gaps = 71/399 (17%) Query: 8 EIWYASYSL---PGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDL---PDVTFEE 61 IW A SL G+ +++S + + +A K+ + LG L +T E Sbjct: 47 GIWEARASLGYDADGRPVRKSFYARTREEA----VKKLTQALHQASLGVLTAPARLTLGE 102 Query: 62 ACLRWLEEKADKKSLDSDKSRIE-----FWLEHFEGIRLKDISEAKIYSAVSRMHNRKTK 116 WLE K + + E + L + L+ ++ A + + + + Sbjct: 103 WLATWLETYKKGKLRPTTLANYETVIRAYILPSLGSVPLRSVTPASLQALYNSL------ 156 Query: 117 EIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIP 176 + +S +T ++ A L+ A ++ L + P Sbjct: 157 --------------------SARGLSARTVRLVHVVLNACLKQAVKN-GLLVRNPAEATE 195 Query: 177 AVRNKR---VRWLEKEEAKRLIDECP-EPLKSVVKFALATGLRKSNIINLEWQQIDMQRR 232 + KR VR L +EE + + E L AL TGLR+ ++ L+W+ +D++R Sbjct: 196 PPKLKRRVPVRPLAREEVEAFLKAARGERLYPAFALALKTGLRRGEVLGLKWEDVDLERG 255 Query: 233 VAWVN--------------------PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFV 272 V V P+ KS R V L +L+ + ++ Sbjct: 256 VLRVRRSLVEAKDPETGKVRLVFQEPKTEKSRRT--VPLTRDVVALLKSHKARQNEEKLY 313 Query: 273 HTKAAKRADGTSTPAVRKM--RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVP 330 +A + + K + ++ S ++AG+E RFH LRHT+A+ L+ SG Sbjct: 314 FGEAYEDNGLVFCTELGKPIWPRNFLRAFHSVLKKAGLERHRFHALRHTFATLLLASGEE 373 Query: 331 LSVLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIF 368 L +QE+ G E I YA + + + ++D Sbjct: 374 LKNVQELLGHERISTTADVYAEVLEDAKKKAVTRLDAFL 412 >UniRef50_A6Q245 Site-specific recombinase, phage integrase family n=1 Tax=Nitratiruptor sp. SB155-2 RepID=A6Q245_NITSB Length = 378 Score = 167 bits (423), Expect = 7e-40, Method: Composition-based stats. Identities = 74/388 (19%), Positives = 148/388 (38%), Gaps = 61/388 (15%) Query: 1 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDK-----RKAELWRVEKLGDLP 55 +S+FRR + Y + + GGK ++S G D + ++L K +A++ E +L Sbjct: 15 VSIFRRGKKLYLQFMV-GGKPKQKSTGLDDTKANRQLVKKHLIPKLEAKIISGELEAELK 73 Query: 56 ----DVTFEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMH 111 F ++L K K+ D +++ +E F + I+ +I Sbjct: 74 AKETPKAFRYYAEKYLLLKEQLKTYDELSKQVDKLIEVF-DKDIDAITRGEI-------- 124 Query: 112 NRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAP 171 KE + + + +T K+L ++ +I A ++ ++ P Sbjct: 125 -------------------KEWSAFALRDKTPKTVRKYLNLLGSIFDTAI-EYGVIKDNP 164 Query: 172 V--IKIPAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDM 229 IK+P K +E + L+ ++ + A TG+R II L +++ Sbjct: 165 ARKIKLPVHIEKHKEPFSSDEVELLLSTASGWFRNYLAIAFFTGMRPGEIIALTKDDVNL 224 Query: 230 QRRVAWVNPEESKSNRA--------IGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRAD 281 +RR V+ V + D L DQI ++F ++K + D Sbjct: 225 KRRTINVSKARRYGKTTTPKTVYSIREVPILDALVPYLMDQIENSSYYLFTNSKGDQFWD 284 Query: 282 GTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSG-VPLSVLQEMGGW 340 W ++G+ + RHT+ + +++SG V + L ++ G Sbjct: 285 AKKLHPY----------WKEVIEQSGLMYREMYATRHTFITAMLKSGYVSVMELAQIVGH 334 Query: 341 E-SIEMVRRYAHLAPNHLTEHARKIDDI 367 + S E++ YA + +++ID Sbjct: 335 KNSTEIMNNYARFISGEHLKISKQIDPF 362 >UniRef50_C7I1A8 Integrase family protein n=1 Tax=Thiomonas intermedia K12 RepID=C7I1A8_THIIN Length = 340 Score = 167 bits (422), Expect = 7e-40, Method: Composition-based stats. Identities = 90/382 (23%), Positives = 140/382 (36%), Gaps = 72/382 (18%) Query: 5 RRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPD--VTFEEA 62 +R W A G + S K +A+ K ++E+ R + + P VTF + Sbjct: 6 KRAGAWRALIRRKGYPAL--SATFDTKAEAEAWARKTESEIDRGQHVDHRPAKAVTFSDC 63 Query: 63 CLRW-LEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQ 121 R+ +E KK D+++SRI F LEH R A+ + + Sbjct: 64 LRRYAVEVSEQKKGADAERSRIVFLLEHPLSKR-----------AIGDLRPVDFARHRDE 112 Query: 122 KVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKW-LEKAPV--IKIPAV 178 ++ A VS + LA+I + A R+W L P+ I P V Sbjct: 113 RLAA---------------VSPASVRLELALISHLFSVAIREWGLGLSSNPIQQISKPKV 157 Query: 179 RNKRVRWLEKEEAKRLIDECPE------------------PLKSVVKFALATGLRKSNII 220 +N R R L +E +RL K +V AL T +R+ ++ Sbjct: 158 QNARDRRLAGDEEERLFAAIDAICAIRTPRANRAAVHPAMWFKQIVILALETAMRQGELL 217 Query: 221 NLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRA 280 W + R ++ ++K+ A V L+ A + +F + Sbjct: 218 EATWDNLHANERYLFL--PDTKNGTARSVPLSHIALDAILSVERTDDTRIFPVSA----- 270 Query: 281 DGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGW 340 K W A R A IEDF FHDLRH S L + +P+ L ++ G Sbjct: 271 ------------FAVKNYWEKALRLAAIEDFHFHDLRHEATSRLARK-LPMHDLMKVTGH 317 Query: 341 ESIEMVRRYAHLAPNHLTEHAR 362 +S M+ RY H P L Sbjct: 318 KSSAMLARYYHPVPADLAAALD 339 >UniRef50_B5ZXT1 Integrase family protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2304 RepID=B5ZXT1_RHILW Length = 368 Score = 167 bits (422), Expect = 7e-40, Method: Composition-based stats. Identities = 79/373 (21%), Positives = 142/373 (38%), Gaps = 48/373 (12%) Query: 10 WYASYSLPGGKRIKE-SLGTKDKRQAQELHDKR-KAELWRVEKLGDLPDVTFEEACLRWL 67 WY + G +R K +LGT D +A+ D + R+ + DVT +E +L Sbjct: 25 WYRCFYEDGTRRTKRVTLGTDDYEEAKRRLDAWYMDQRMRIAQDLSPTDVTLKEVFKDYL 84 Query: 68 EEKA-DKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAA 126 + A + +S +S K + +W EH+ + V+ Sbjct: 85 DNHAVNLRSYESVKILLRYWEEHWGE------------------------KASVADVRNV 120 Query: 127 IRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKRV--R 184 I + K K ++ + + L +A +R A + + P ++I + R Sbjct: 121 IEQEKFRTALFAKGLAINSVNRTLEAGRAAIRRAFK-RNVISAMPFVEILPYERDKPKGR 179 Query: 185 WLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESK-- 242 L EE +L EC + ++ + L TG R I L W+QID + + ++NP K Sbjct: 180 PLSVEEIGKLYAECADHMRLFMILMLGTGARNEAICTLTWEQIDFEAGLIYLNPPGRKQT 239 Query: 243 SNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSA 302 S R V + + L + + + K+ + A AV + ++ K Sbjct: 240 SKRRPVVRMTPFVREQLSKFNDREGRVLSFRGKSFRTAHQGIGKAVGRAKLKGK------ 293 Query: 303 CRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESI--EMVRRYAHLAPNHLTEH 360 + RHT A WL + GV + G + + YA +P++L + Sbjct: 294 --------VTPYSFRHTVARWLRKEGVSPWEVGAQLGHKMPGYNITEMYASASPDYLEKA 345 Query: 361 ARKIDDIFGDNVP 373 A I+ + +P Sbjct: 346 AEAIEKLLRTAIP 358 >UniRef50_A0LHA2 Phage integrase family protein n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LHA2_SYNFM Length = 329 Score = 167 bits (422), Expect = 8e-40, Method: Composition-based stats. Identities = 77/324 (23%), Positives = 136/324 (41%), Gaps = 47/324 (14%) Query: 57 VTFEEACLRWLEEKA--DKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRK 114 V F+E +L + +KSL+ + E FEG+R+ DI+ A + + + Sbjct: 20 VKFDELAEDFLTDYRINQRKSLERAEISTRHLKEKFEGMRIADITTATVKTYIE------ 73 Query: 115 TKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRA-AERDWKWLEKAPVI 173 + T + LA +K +L+ A+ +++ P I Sbjct: 74 --------------------ERMGSGAAHATINRELAALKRMLKLGAQSTPPKVDRVPHI 113 Query: 174 KIPAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRV 233 + RN R + E+ + L D P LK VV F TG RKS I+ L+W Q+D+ + Sbjct: 114 PMLKERNAREGFFERADFLALRDALPSYLKGVVTFGFKTGWRKSEILCLQWAQVDLDNGI 173 Query: 234 AWVNPEESKSNRAIGVALNDTACKVL------RDQIGKHHKWVFVHTKAAKRADGTSTPA 287 ++P ++K++ V L++ +V R + GK +VF + R Sbjct: 174 VRLDPGDTKNDNPRMVYLDEELKEVFQTQWIARKETGKLSAYVFPNEAGMDRIR------ 227 Query: 288 VRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVR 347 D + SW +AC AGI FHDLR T +++SG+ + ++ G ++ + Sbjct: 228 ------DFRKSWDTACTEAGISGKLFHDLRRTAVRNMVRSGISERIAMKISGHKTRSVFD 281 Query: 348 RYAHLAPNHLTEHARKIDDIFGDN 371 RY + L + A + + + Sbjct: 282 RYDVTSGEDLKKAASRQEAYLQEQ 305 >UniRef50_C4FP65 Putative uncharacterized protein n=1 Tax=Veillonella dispar ATCC 17748 RepID=C4FP65_9FIRM Length = 357 Score = 167 bits (422), Expect = 8e-40, Method: Composition-based stats. Identities = 82/386 (21%), Positives = 148/386 (38%), Gaps = 54/386 (13%) Query: 5 RRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACL 64 +R + Y L GKR GT K E ++ + + E + Sbjct: 4 KRADGRYQVSKLINGKRKY-FYGTTKKAAIAERDAYVESLAQCANYDNTITTERWCEYWI 62 Query: 65 RWLEEKADKKSLDSDKSRIEFWLEHFEG-IRLKDISEAKIYSAVSRMHNRKTKEIWKQKV 123 R + + +L S + I+ ++ F G IRL ++S + + + M + Sbjct: 63 RLKTDTVSQNTLSSYQYIIKTYIVPFIGSIRLVELSALNVRALMDSMSH----------- 111 Query: 124 QAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKRV 183 +S +T + L +++AIL+ A D + + K + + +R Sbjct: 112 -----------------LSARTISYTLTVLRAILKQAVMD-EIISKNVATLVKKPKQERK 153 Query: 184 R---WLEKEEAKRLIDECPE-PLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNP- 238 R L KEE + +++ + ++ K A TGLR+S I+ L W ++++++ VN Sbjct: 154 REMVTLSKEEVETFLEQIDDVEWHALFKLAFTTGLRRSEILGLTWDDVNLKQKTLTVNQT 213 Query: 239 -----------EESKSNR-AIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTP 286 + +K++ ++L+D L K R + P Sbjct: 214 VLRIDEVTTISKTTKNSSSRRSISLDDKTIAELLKLRTCVDKRRLKAPNW--RNNNLVFP 271 Query: 287 AVRKMRIDSKTSWLSACRRA---GIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESI 343 D L + A G DF HD RHT A+ L+++GV V+Q G S Sbjct: 272 GKFGNPRDPAKVSLKCKKFATAIGRPDFTMHDTRHTHATLLLEAGVNFKVVQMRLGHSSY 331 Query: 344 EMVR-RYAHLAPNHLTEHARKIDDIF 368 + Y+H+ P + KI +IF Sbjct: 332 QQTMDTYSHVTPIMEADVVEKISNIF 357 >UniRef50_B8KTC0 Site-specific recombinase, phage integrase family n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KTC0_9GAMM Length = 296 Score = 167 bits (422), Expect = 9e-40, Method: Composition-based stats. Identities = 67/319 (21%), Positives = 119/319 (37%), Gaps = 37/319 (11%) Query: 57 VTFEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTK 116 TF++ W+ A ++ RI+FW+E F + I+E + A+ R+ R Sbjct: 2 TTFQDVAEAWI---ASREHCVGSLGRIQFWVEEFGDQPIDAITEDAVDQALVRLAKRGKL 58 Query: 117 EIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKA--PVIK 174 + + + A+ G KP++ T + ++ + I + A R P Sbjct: 59 KAGRGSARRAVPTG--------KPLAGSTINRFISTLSGIFKYARRVRALPRSHTPPTRG 110 Query: 175 IPAVRNK--RVRWLEKEEAKRLIDECP------EPLKSVVKFALATGLRKSNIINLEWQQ 226 I ++ EE +L+ L +++ TGLR N+++L+W+ Sbjct: 111 IEKAPEPVDPEKYFRPEEVDKLMAVARVVDQKWRKLPALIILGFHTGLRVGNLLDLKWED 170 Query: 227 IDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQI-GKHHKWVFVHTKAAKRADGTST 285 +D+ R V +K+ R AL D L+ G VF + K Sbjct: 171 VDLDERTLSV--ATTKNGRPHIAALTDRCITELQKLPAGSPSDLVFRSYRTDKP------ 222 Query: 286 PAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEM 345 + + W C AG E FH LRH S L +GV + + ++ G ++ Sbjct: 223 -------FNYRDLWQKVCDEAGFEGRTFHWLRHGCGSALASAGVSQAQIMQVMGHRTLVA 275 Query: 346 VRRYAHLAPNHLTEHARKI 364 RY H ++ Sbjct: 276 SARYMHSNVEDRRAVVGRV 294 >UniRef50_B8EKX9 Integrase family protein n=1 Tax=Methylocella silvestris BL2 RepID=B8EKX9_METSB Length = 428 Score = 167 bits (422), Expect = 9e-40, Method: Composition-based stats. Identities = 82/349 (23%), Positives = 141/349 (40%), Gaps = 24/349 (6%) Query: 28 TKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRWLE--EKADKKSLDSDKSRIE- 84 T ++ QA+ + A+ R E G P +T +L+ E KS+ ++RIE Sbjct: 80 TFNEAQAK---AREIAKARRQEASGAAP-ITISTVLDAYLKQAEAQHSKSVSDSRNRIEN 135 Query: 85 FWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQ 144 F + D+++ I + + + + + K R + + K Sbjct: 136 HIRPAFGAMLASDLTQEAIQKWLKALAD--SPRNVRGKAGTVSRALAKPKTDDEKRRRRA 193 Query: 145 TKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRN---KRVRWLEKEEAKRLIDECPEP 201 + + L +++A L R K I R RVR+ ++E +RL++ Sbjct: 194 SANRTLTILRAALNQGFRSGKITSDTVWRTIQPFREVDAPRVRYFTQDEVRRLVNAAQGE 253 Query: 202 LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRD 261 +S+V AL TG R + L+ + +V +SKS +A V L + R Sbjct: 254 FRSLVNAALFTGCRYGELCRLQVGDFNPDAGTVFV--GQSKSGKARHVVLTEEGQGFFRQ 311 Query: 262 QIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWA 321 + RADG A ++R ++ + +AG FH LRHT A Sbjct: 312 LTAGRP----TNALMLSRADGAPWGASHQIRPMAEACKAAKIAKAG-----FHILRHTAA 362 Query: 322 SWLIQSGVPLSVLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIFG 369 S + GVP+ V+ + G M + YAHLAP+++ + R+ FG Sbjct: 363 SHNVMGGVPMPVVAKNLGHADSRMTEKHYAHLAPSYVADQIRQFAPTFG 411 >UniRef50_D2L4K8 Integrase family protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L4K8_9DELT Length = 395 Score = 167 bits (422), Expect = 9e-40, Method: Composition-based stats. Identities = 83/391 (21%), Positives = 146/391 (37%), Gaps = 65/391 (16%) Query: 5 RRNEIWYASYSLPGGKRIKESLGTK-----DKRQAQELHDKRKA----------ELWRVE 49 + I+Y Y GK I+E G + +A + +R E Sbjct: 26 KPERIYYVMYR-RDGKLIEEKAGRQFQDAMTPAKAARIRAERIEGKAPSNNARREAEEAA 84 Query: 50 KLGDLPDVTFEEACLRWLEEKADKKSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVS 108 K ++ T + + K + +L +D+SR E + F ++ + S Sbjct: 85 KAAEVGRWTLAKLWTEYASHKPENHALSTDRSRFETYIKPAFGEKEPAEVLTLDLDRMRS 144 Query: 109 RMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLE 168 R+ +++GK S QT LA+ K ++R + Sbjct: 145 RL----------------LKQGK----------SPQTVKHVLALFKRLVRFGVKKGLCDS 178 Query: 169 KAP---VIKIPAVRNKRVRWLEKEEAKRLIDECPEP----LKSVVKFALATGLRKSNIIN 221 P I +P V N+ L+ +E RL+ + + ++ A+ TG+R+ + Sbjct: 179 PDPRKQTISMPRVDNETTEDLDADELARLVQAIEDEPNIQAANFMRLAMFTGMRRGELFK 238 Query: 222 LEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIG-KHHKWVFVHTKAAKRA 280 LEW+ +D +R + K ++ + LND A VL ++ +VF +R Sbjct: 239 LEWRDVDFERGFIHIRHP--KGGKSQKIPLNDAARAVLASHPHVENSPYVFPGQGGKQRV 296 Query: 281 DGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSG-VPLSVLQEMGG 339 K R + H LRH +AS L SG V L LQ++ Sbjct: 297 TIQVASNRIKARASLPADFRPL-----------HGLRHLFASTLASSGQVDLLTLQKLLT 345 Query: 340 WESIEMVRRYAHLAPNHLTEHARKIDDIFGD 370 +S M +RY+HL + L + + D+ G+ Sbjct: 346 HKSPNMTKRYSHLRDDALKQASGVASDLLGN 376 >UniRef50_A1V9J7 Phage integrase family protein n=1 Tax=Desulfovibrio vulgaris DP4 RepID=A1V9J7_DESVV Length = 400 Score = 166 bits (421), Expect = 9e-40, Method: Composition-based stats. Identities = 85/397 (21%), Positives = 147/397 (37%), Gaps = 72/397 (18%) Query: 6 RNEIWYASYSLPGGKRIKESLG------TKDKRQAQELHDKRKAELWRVE---------- 49 R ++++ GK+ E LG T K QA+ K A Sbjct: 25 RRDVYFMLRYTIDGKQRSEGLGWATEGWTLAKAQAELFRLKEAARTGEGPVTLAEQREQA 84 Query: 50 ---KLGDLPDVTFEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSA 106 + + T +LE ++ +DKSR ++ F+ Sbjct: 85 RRAREAERQRRTIGGLWDFYLEAHQERAGTPADKSRAKYLAGLFDSYP------------ 132 Query: 107 VSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKW 166 +++ V A RK E + +S Q+ LA+++ +LR + + Sbjct: 133 ---------EDLRTGHVDALRRK------IEAQGMSPQSVKHVLALLRRVLRYC--EGRG 175 Query: 167 LEKAP-----VIKIPAVRNKRVRWLEKEEAKRLIDECP----EPLKSVVKFALATGLRKS 217 L P + +P V N + L E+A+ L++ + L ++V+ AL TG+R+ Sbjct: 176 LCSLPGRALLIFDLPPVDNAKTENLTHEQARALLEALDADPDQNLAAMVRLALLTGMRRG 235 Query: 218 NIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAA 277 + L+W +D + + +KS + + + D A KVL +VF Sbjct: 236 ALFGLQWGDLDFRNARITLRGATAKSGKTSSIPMTDDARKVLLGVQRTESLYVFPGRNGG 295 Query: 278 KRADGTSTPAVRKMRIDSKTSWLSACRRAGIED-FRF-HDLRHTWASWLIQSGVPLSVLQ 335 KR ++ + RAG+ D FR H LRHT+ASWL SGV L ++ Sbjct: 296 KR-------------VECRRFLNRIRLRAGLPDGFRPLHGLRHTFASWLASSGVSLLQIK 342 Query: 336 EMGGWESIEMVRRYAHLAPNHLTEHARKIDDIFGDNV 372 ++ RY+ + A I + V Sbjct: 343 DLLTHGDYRSTTRYSAFFDHEQRLAASLIGEHLAQAV 379 >UniRef50_A6TLJ2 Phage integrase family protein n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TLJ2_ALKMQ Length = 382 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 69/399 (17%), Positives = 143/399 (35%), Gaps = 61/399 (15%) Query: 2 SLFRRNEIWYASYS---LPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 S+ +R W + G ++ KE+ G K K +A K EL + + ++ Sbjct: 4 SVRKRGNTWSYRIDLGIVDGSRKQKETGGFKKKSEAHSALRKAIDELENTGGVFEPTTIS 63 Query: 59 FEEAC----LRWLEEKADKKSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMHNR 113 F + ++E + S + + I+ F ++ I+ + + +++ Sbjct: 64 FSDYLNYFIENYIEIHLRENSQRARQHIIKNHIRPAFGNYKIMQITSQALQNFITK---- 119 Query: 114 KTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV- 172 + K S + A + + A +W+++ P+ Sbjct: 120 -----------------------KSKAYSKNYISMIHATLSTAFKMAV-EWEFIRINPMT 155 Query: 173 -IKIPAVRN----KRVRWLEKEEAKRLIDECPEPLKSV-VKFALATGLRKSNIINLEWQQ 226 +K+P + K ++ L EE R + + A TGLR + L+W Sbjct: 156 RVKVPKRDDQEMDKEIKTLSPEEVNRCAERLQGTHHYIPFMIAFHTGLRAGEVSALQWSD 215 Query: 227 IDMQRRVAWVN---------------PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVF 271 ID ++ V P +++S+ +A+ + +L+ K Sbjct: 216 IDFDNQMLSVTKRLDYSASKENWEFKPPKTRSSN-RTIAIGNELITILKSHSINQKKNKL 274 Query: 272 VHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIE-DFRFHDLRHTWASWLIQSGVP 330 + K D T ++ I +S ++ DF FH LRHT A+ L+++G+ Sbjct: 275 KYGKHYTENDFICTFENGEVVITKAIGRVSEIIIRDVKIDFNFHMLRHTHATMLLEAGIN 334 Query: 331 LSVLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIF 368 V+QE G ++ + Y+H+ + + Sbjct: 335 PKVVQERLGHSTVSITLDTYSHITIEFQKTAVLEYEKYL 373 >UniRef50_UPI000169495E prophage LambdaBa04, site-specific recombinase, phage integrase family protein n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI000169495E Length = 379 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 65/392 (16%), Positives = 136/392 (34%), Gaps = 65/392 (16%) Query: 7 NEIWYASYSLP----GGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEA 62 WY Y + G ++ KE G + K +AQE + ++EL + + +T E Sbjct: 22 GAKWYYRYDITDPKTGKRKQKEVGGFRTKEEAQEAAVRIQSELLNGTYV-EPTKLTVGEF 80 Query: 63 CLRWLE-----EKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKE 117 L ++E E A + +RL D++ + + + Sbjct: 81 LLDFVENTLKYEVAPNTYEQRMTFVKNHIQPNIGSLRLTDLTPNHVQKFYNSLREHYGAG 140 Query: 118 IWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPA 177 ++ A + W + + P+ + Sbjct: 141 Y---------------------------VQNIGNLLSKAFTQAVK-WNMISRNPIPLVKK 172 Query: 178 V----RNKRVRWLEKEEAKRLIDEC---PEPLKSVVKFALATGLRKSNIINLEWQQIDMQ 230 +N +++ E+ ++ +D P+ + AL +G+RK ++ L W +D + Sbjct: 173 PSLSRKNTKMKTWTVEDQRKFLDYAKDGPKLYYVIFLLALTSGMRKGELLGLIWDDVDTK 232 Query: 231 RRVAWVN------------PEESKSNRA-IGVALNDTACKVLRDQIGKHHKWVFVHTKAA 277 + + + + K+ A + L + KV++ + + Sbjct: 233 KGIVSIKRTIVYAQRKLYLKDMPKTESAIRTIQLPEPTIKVMKQWKLECPANELNLLFPS 292 Query: 278 KRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEM 337 + G P + AG+ + H LRHT+A+ L+ S V ++QEM Sbjct: 293 PKTKGILYPN------SLDKQLAKTIKGAGVPEITMHGLRHTFATTLLGSNVNPKIVQEM 346 Query: 338 GGWESIEMVR-RYAHLAPNHLTEHARKIDDIF 368 G +I+ Y+H+ PN + A ++ + Sbjct: 347 LGHATIKTTMDTYSHVLPNMQKDAASQLGAVL 378 >UniRef50_B9MP49 Integrase family protein n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MP49_ANATD Length = 373 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 77/395 (19%), Positives = 137/395 (34%), Gaps = 56/395 (14%) Query: 5 RRNEIWYA--SYSLPGGKRIKESLG-TKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEE 61 ++ + +Y + GKR ++ LG + K +A+E + +++ + L TF E Sbjct: 7 KKGKKYYIVVDIGVVDGKRKQKWLGGFETKAEAEEALPRILNIIYQNKN-KLLEQKTFGE 65 Query: 62 ACLRWLEEKADKKSLDSDK-----SRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTK 116 WL A + S S + L ++ + + Sbjct: 66 LLDLWLNTVAKNRVSLSTFQSYSSSIALHIKPFLGDVELNKLTAMDLQKYYQHITGE--- 122 Query: 117 EIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IK 174 K +S+ H +I L A R +EK P + Sbjct: 123 ----------------------KGLSSTLALYHHRIIHQALDYAVR-MNMIEKNPADYVD 159 Query: 175 IPAVRNKRVRWLEKEEAKRLIDECPEPLKSV-VKFALATGLRKSNIINLEWQQIDMQRRV 233 P R+ + +++ KR +D V V A+ TG+R I L+W I++++ Sbjct: 160 PPRKRSYQPSIWDEDTIKRALDIFRNTNIWVPVLLAIYTGMRIGEITALKWDDINLEQGY 219 Query: 234 AWVNPEESKSNRA-------------IGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRA 280 V+ K NR VA++ + L+ K ++ K Sbjct: 220 IVVSKTLMKINRQLYIKEKGENKSSYRIVAISSNVIEELKQWRRKQEQYK-EKLKELYHN 278 Query: 281 DGTSTPAVRKMRIDSK---TSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEM 337 +G D K + + G+ RFHDLRHT AS L++ GV + + Sbjct: 279 EGFVCTFEDGRVQDPKYITKVFQKTIEKHGLPKIRFHDLRHTHASLLLKHGVDPKHISDR 338 Query: 338 GGWESIEMV-RRYAHLAPNHLTEHARKIDDIFGDN 371 G +I Y+H+ + A +DI + Sbjct: 339 LGHSTITTTLNIYSHVFDEKRRKVAETFEDILKNQ 373 >UniRef50_Q2W8W7 Integrase n=2 Tax=Magnetospirillum RepID=Q2W8W7_MAGSA Length = 359 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 80/373 (21%), Positives = 149/373 (39%), Gaps = 63/373 (16%) Query: 9 IWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGD--LPDVTFEEACLRW 66 W A G + ++ T K +AQ+ ++E+ R T +A + Sbjct: 25 SWQARVRRKGFPDMFKTFRT--KVEAQKWAAVTESEMARHVFTDRSLAERTTLGDALEVY 82 Query: 67 LEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAA 126 +E +K+ + I+ WL+H + R + + QA Sbjct: 83 RDEVTVEKAGHQEGYVIKAWLKH-------------------PLSKRTLSSLKVRDFQAW 123 Query: 127 IRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKW-LEKAPVIKI--PAVRNKRV 183 + + K V +T H+ +I + E + PV+K+ P + R Sbjct: 124 VTEKK-------ATVGPKTIRLHIGVISNLYNRLENLLEIEALPNPVLKLILPPLPEGRD 176 Query: 184 RWLE---------KEEAKRLIDECPE----PLKSVVKFALATGLRKSNIINLEWQQIDMQ 230 R L + EA+ LI C + ++ V+FAL +R++ I+ + W+ +D+ Sbjct: 177 RRLNVIEHDDGTVRNEAEALIGACADAVNPWIRPAVEFALDGAMRRNEIVQMRWEHVDLN 236 Query: 231 RRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRK 290 + + +K+ + VAL+ +VLR VF T A Sbjct: 237 AGMVRLPAAITKTGVSRDVALSPAGVQVLRTLPRSIDGRVFPLTADA------------- 283 Query: 291 MRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYA 350 +++ A +RAG++D FHDLRH AS L + G+ L + + G ++++M++RY Sbjct: 284 ----LYRAFVRARKRAGLDDLHFHDLRHEAASRLREEGLDLMEIASITGHKTLQMLKRYV 339 Query: 351 HLAPNHLTEHARK 363 H+ + E +K Sbjct: 340 HVKAKDVVEKRQK 352 >UniRef50_Q73NH9 Site-specific recombinase, phage integrase family n=2 Tax=root RepID=Q73NH9_TREDE Length = 354 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 81/387 (20%), Positives = 146/387 (37%), Gaps = 60/387 (15%) Query: 1 MSL---FRRNEIWYASYSLPGGKRIKESLG---TKDKRQ-------AQELHDKRKAELWR 47 MS+ RN+I+ + Y GKR +ES G T DK Q A+ L KR+ L Sbjct: 1 MSVKLWINRNKIYLSIY--ISGKRWRESTGLTVTTDKAQNKVVMDMAEVLRSKREVSLIA 58 Query: 48 VEKLGDLPDVTFEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAV 107 V P +T + L +++ A +K+ ++ W+E Sbjct: 59 VSNGLSDPALT-KITVLEYVKNAAAEKNKKHPLHKVVLWIEKISPT-------------- 103 Query: 108 SRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWL 167 + W + Q +++ E +S T + ++ + + A RD L Sbjct: 104 --LKMDALTPTWFENFQQTLQRETE--------LSPYTCENYACSLRTLFKKAVRD-GVL 152 Query: 168 EKAPVIKIPAV--RNKRVRWLEKEEAKRLIDE-----CPEPLKSVVKFALATGLRKSNII 220 K P I + + +L E+ ++L E +K FA TGLR S++ Sbjct: 153 VKDPTIGVKHIHCPESIKEFLMPEDIRKLAAEPIGGILGADVKKAFLFACCTGLRISDLK 212 Query: 221 NLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRA 280 +L+W + +++ + K+ RA+ + + D A L + + Sbjct: 213 SLKWGGVSFEKKTLT--KIQQKTKRAVYLPIKDEAIAFL---------HLLAEENPNRTD 261 Query: 281 DGTSTPAVRKMRIDSKTSWLSACRRAGIE-DFRFHDLRHTWASWLIQSGVPLSVLQEMGG 339 + P V + + +RAG+ +H RHT A+ L++SG L +Q++ G Sbjct: 262 EDFIFPHVATTGTNMNQYLIEWGKRAGVRQKIGWHLARHTHATLLLESGADLYTVQKLLG 321 Query: 340 WESIEMVRRYAHLAPNHLTEHARKIDD 366 I +Y + E + D Sbjct: 322 HTKISTTAQYTQVTDRKKKEAIDLLPD 348 >UniRef50_B6IMM4 Phage integrase n=1 Tax=Rhodospirillum centenum SW RepID=B6IMM4_RHOCS Length = 442 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 86/320 (26%), Positives = 130/320 (40%), Gaps = 21/320 (6%) Query: 58 TFEEACLRWLEEKADKKSLDS-DKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTK 116 T +A +L + ++ D L GI L ++ +I + + N + Sbjct: 121 TVRDAVASYLATLQNARTRKEFDTEAKAHILPALGGIDLSKLTSGRITKWLEGIANSPPR 180 Query: 117 EIWKQKVQAAIRKGKELPVYEPKPVSTQ--TKAKHLAMIKAILRAAERDWKWLEK---AP 171 + K +AA R+ ++ + +P + + T L ++KA L A R + A Sbjct: 181 --LRTKTKAAERRTADVDMSDPDVIRRRRHTANHQLKILKAALNHAYRGKRVETDSAWAT 238 Query: 172 VIKIPAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQR 231 V V RVRWL ++EA RL++ L+++V+ AL TG R + L Q+ID+ Sbjct: 239 VRPFKGVSEARVRWLAQDEAVRLVNASAPDLRAMVRGALLTGCRYEELARLRVQEIDLLN 298 Query: 232 RVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKM 291 +V SKS + V L + RD V T+A G S Sbjct: 299 GSVYVRL--SKSGKPRHVVLTEEGVAFFRDHTAGRTADDLVFTRANGEPWGKS------- 349 Query: 292 RIDSKTSWLSACRRAGIED-FRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRR-Y 349 AC A I+ FH LRHT ASWL Q GV + V+ G + R Y Sbjct: 350 --HQHRPIKDACAAAKIKPAISFHILRHTHASWLAQRGVSMQVIAAQLGHSDTRITERHY 407 Query: 350 AHLAPNHLTEHARKIDDIFG 369 AHL+P+H R G Sbjct: 408 AHLSPSHHAAAVRAALPNLG 427 >UniRef50_Q2W780 Integrase n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2W780_MAGSA Length = 321 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 78/368 (21%), Positives = 137/368 (37%), Gaps = 62/368 (16%) Query: 6 RNEIWYASYSLPGGKRIKESLG-----TKDKRQAQELHDKRKAELWRVEKLGDLPDVTFE 60 R + + + GGKR + SLG + AQ + + + + T Sbjct: 7 RGK--WCAVVHVGGKRFRRSLGNLDATPDNYPAAQRACADLERAIAQPKSD------TIA 58 Query: 61 EACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 + +L + S + + H G+R I Sbjct: 59 DIVDAYLADTKAITS-EYMRWMWGVLKPHCAGLRPDQID--------------------- 96 Query: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRN 180 +G + + T K ++ + A +R A+ D V ++P+ Sbjct: 97 --------RGWCREYASKRGKAPATIRKEISFLAAAIRWAKGDAGG---GAVFELPSPPP 145 Query: 181 KRVRWLEKEEAKRLIDECP--EPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNP 238 R RWL + E RL+D L + + ALATG RK I+ L W Q+D ++ Sbjct: 146 PRDRWLTRPEFMRLLDAAQPHPHLVTFLHLALATGARKEAILELTWPQVDFSAGRIFLGN 205 Query: 239 EESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTS 298 + RA+ V + + VL+ Q + +V + + K + Sbjct: 206 KPGGKARAV-VPMTKSLRTVLQAQNQRREDSGYVVEYGGAKVG------------NIKKA 252 Query: 299 WLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRR-YAHLAPNHL 357 + +A R AG++D HDLRHT A W+ GV + + + G ++ R YA +P+HL Sbjct: 253 FATAARNAGLDDVTPHDLRHTAAVWMAADGVSMEKIAQYLGHSDHKITERVYARFSPDHL 312 Query: 358 TEHARKID 365 + A ++ Sbjct: 313 KDAAAALE 320 >UniRef50_C2NSI2 DNA integration/recombination/invertion protein n=2 Tax=Bacillus cereus group RepID=C2NSI2_BACCE Length = 382 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 77/362 (21%), Positives = 138/362 (38%), Gaps = 44/362 (12%) Query: 30 DKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRWLEEKADKKSLDSDKSRIEFWLEH 89 KR+A + KA++ E+ DL +T+ W++E+ + + + Sbjct: 44 TKREAHDAMLILKAKMLSGER-SDLSKLTYAAYVDEWMKERTFHLQETTYEIHKTYIANV 102 Query: 90 FEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKH 149 + R+ + + +EI +Q + + Y S T Sbjct: 103 IK----------------PRLGHFQMREIEPIHMQKFVNELAIDIGY-----SPATVHLI 141 Query: 150 LAMIKAILRAAERDWKWLEKAPVIKI--PAVRN-KRVRWLEKEEAKRLIDECPEPLKS-- 204 ++ A L+ A + K +++ P I I P +R + EE I+E +S Sbjct: 142 YRIVSASLKKA-KVLKLIDENPTIGITLPKLRKTSEINVWTLEEVNHFINEGKNVYRSTR 200 Query: 205 ---VVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNR----------AIGVAL 251 AL TG+R+ I+ L W+ ID + R+ ++ ++S + V Sbjct: 201 MYICCVIALLTGMRQGEIMGLRWKDIDFENRIIYIRQTLTQSGKIKVGAKNNASIRNVHF 260 Query: 252 NDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRI--DSKTSWLSACRRAGIE 309 L K H K + + I + + + + + G+ Sbjct: 261 PIKLIGELELHRETVKKERLYHGKDYEDNNLVICARKGNPLIPKNGRIEFYNLTEKLGLP 320 Query: 310 DFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIF 368 RFHDLRHT A+ LIQ V + ++ E G I+ Y+H+ PN E A K+D +F Sbjct: 321 KIRFHDLRHTHATMLIQQNVNVKLISERLGHTDIQTTLNTYSHVLPNMQREVADKLDVMF 380 Query: 369 GD 370 G+ Sbjct: 381 GE 382 >UniRef50_D2BJR0 Site-specific recombinase, phage integrase family n=2 Tax=Dehalococcoides RepID=D2BJR0_DEHSV Length = 385 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 74/401 (18%), Positives = 136/401 (33%), Gaps = 57/401 (14%) Query: 3 LFRR-NEIWYASYSL----PGGKRIKESLGTK-DKRQAQELHDKRKAELWRVEKLGDL-- 54 + +R N W + GK+I + K K A+ K A L + G Sbjct: 5 IKKRANGTWSIVVYMGRDPKTGKKIYQWQTVKGTKSHAE----KELAALINRKNNGSFVK 60 Query: 55 -PDVTFEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNR 113 T WLE A + R + L I Sbjct: 61 PTKTTVGTFLESWLETYASCNTAPRTFERYSQIVRLHLTPNLGRI--------------- 105 Query: 114 KTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV- 172 + ++ + +QA K +S QT H ++ L A + W L + Sbjct: 106 ELTQLRPEHIQAYYSKALSGGRVSGGGLSAQTVKHHHRVLSEALNHAVK-WGLLARNVAM 164 Query: 173 -IKIPAVRNKRVRWLEKEEAKRLIDECPE-------PLKSVVKFALATGLRKSNIINLEW 224 + P + + + E+ L +E + P + + AL TG+R+ I+ L W Sbjct: 165 AVDPPRPEKREMHTIAPEDMSVLFEEAAKMEKNSGLPYELIFMTALHTGMRRGEILALRW 224 Query: 225 QQIDMQRRVAWVN------------PEESKS-NRAIGVALNDTACKVLRDQIGKHHKWVF 271 ID+ + +V E K+ V++ + + L + Sbjct: 225 SDIDLAKSKIYVRCSLQCLKNGEIIIREPKTPGSRRLVSMTPSLLEKLIIHKESSSANMI 284 Query: 272 VHTKAAKRADGTSTPAVRKMRIDSKT---SWLSACRRAGIEDFRFHDLRHTWASWLIQSG 328 + K + D I+ T ++ +RAG+ + R HDLRH+ A+ ++ +G Sbjct: 285 LQGKTLQ-GDSLVFAHFDGTPINPNTVSPAFAKIAKRAGL-NLRLHDLRHSHATLMLTAG 342 Query: 329 VPLSVLQEMGGWESIE-MVRRYAHLAPNHLTEHARKIDDIF 368 V ++ E G ++ + Y+H+ P A+ + Sbjct: 343 VHPKIVSERLGHSTVAFTLDTYSHVIPGLQDAAAKTFEKSL 383 >UniRef50_Q479U8 Phage integrase n=1 Tax=Dechloromonas aromatica RCB RepID=Q479U8_DECAR Length = 340 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 78/370 (21%), Positives = 145/370 (39%), Gaps = 44/370 (11%) Query: 1 MSLFR-RNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTF 59 M+ FR R+ W G + ++ + + +R+ ++ + +T Sbjct: 1 MATFRQRSGGWQVRVRRQGYPDVVKTFKLRQDGEKWARAIERELDMGCYVHRTEAERMTL 60 Query: 60 EEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIW 119 E R+ +E S R E W G+ L+D A++ M ++ Sbjct: 61 AELLDRYGKEV----SPQHKGHREELWK---IGVILRDRIAKYSLVALTPMLVADYRDRR 113 Query: 120 KQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKIPA 177 Q V+ T L +I A + A R+W PV IK P Sbjct: 114 LQV------------------VADATARHELNIISAAYKVAAREWGIPVSNPVSQIKRPP 155 Query: 178 VRNKRVRWLEKEEAKRLIDECP-EPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWV 236 +R R + + E + +I L + A+ TG+R+ II L WQ IDM RR+A++ Sbjct: 156 AGRERKRRISQAEIEAIIQHSKTRELPDFLCLAVTTGMRRGEIIRLRWQDIDMGRRLAYL 215 Query: 237 NPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSK 296 + ++K+ V L+ A VL+ + +F + A+RK + ++ Sbjct: 216 S--DTKNGEDRVVPLSSEALAVLQAMPRRFDGRLFSLEPRG------FSKAMRKSVVRAR 267 Query: 297 TSWLSACRRAGIE-------DFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRY 349 ++ + AG++ D R HD RH S + G+ + + + G +++ ++RY Sbjct: 268 RAYEAESSLAGVQPDPEFLCDLRLHDARHEAVSAFFERGLDVMEVASISGHKTLSCLKRY 327 Query: 350 AHLAPNHLTE 359 H+ + Sbjct: 328 THMRAERIAR 337 >UniRef50_A6QCM5 Site-specific recombinase, phage integrase family n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6QCM5_SULNB Length = 379 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 76/403 (18%), Positives = 157/403 (38%), Gaps = 74/403 (18%) Query: 2 SLFRRNE-----IWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGD--- 53 +++R + I+ ++ GK +G K + ++++ ++ LG+ Sbjct: 13 GIYKRIDAKGEIIYDINFRDEFGKNKFLKVGRKSDGVTVAYCKQYRSKIINMKYLGEDVS 72 Query: 54 ----LPDVTFEEACLRWLE--EKADKKSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSA 106 +TF++ + E + AD K S +R + + ++ I++ I + Sbjct: 73 NIRKKSSITFDDITEDYFEYVKYADFKEPQSFANRYRDHIKDSLGHLPVESITKNDINNL 132 Query: 107 VSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKW 166 + + + K ++ T + + A A K Sbjct: 133 IMLLKD--------------------------KNLAPATIDRIRQQVSATFNVAIGKEKC 166 Query: 167 LEKAPV------------IKIPAVRNKRVRWLEKEEAKRLIDECPEP---LKSVVKFALA 211 P + ++ N R R+L K+EA L+ E + + AL Sbjct: 167 RN-NPASVSRVDSSSLMRLNKKSINNARERYLSKDEANLLLSELKLRRFDVYFMALLALT 225 Query: 212 TGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRD-QIGKHHKWV 270 TG R I+ ++++ ID++ R ++N E+K+ + + + +L + + +K++ Sbjct: 226 TGARAGEILKIQYKDIDLENR--YINLVETKNGSSRKIKITSKVYDILNEIEFESPNKYL 283 Query: 271 FV-----HTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLI 325 F H +A + +DS+ + C FH LRHT+ASWL Sbjct: 284 FAGSKHDHLQAIPNIYSIIVGELFNSELDSRDTKHRVC---------FHTLRHTFASWLA 334 Query: 326 QSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIF 368 +G P+ +Q++ G + I M RYA L+P+ E +++ F Sbjct: 335 INGTPIFTIQKLMGHKDINMTLRYAKLSPDAGVEAVNSLEEKF 377 >UniRef50_A4XLL4 Phage integrase family protein n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XLL4_CALS8 Length = 360 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 68/369 (18%), Positives = 144/369 (39%), Gaps = 50/369 (13%) Query: 18 GGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRWLEEKADKKSLD 77 GKRI++ + +A++ + A + + E RWLEE A K+ Sbjct: 25 NGKRIRKYKTFDKESEAKKYLIQMLA--------NEGKFIPLNEFLDRWLEEYA--KNYV 74 Query: 78 SDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYE 137 + K+ I++ LK + +A + +++ + ++ + Q Q Sbjct: 75 APKTYIKY------KDSLKHVRKAFPSHTLQQLNTFELQKFFNQLSQ------------- 115 Query: 138 PKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKIP-AVRNKRVRWLEKEEAKRL 194 +S + K +++ L+ A + W L++ P+ +K+P K+++ + E K+ Sbjct: 116 --TLSQASVRKIYSVLNNALKTAIK-WNMLKENPLEFVKLPQKYEEKKIKVWDIETVKKF 172 Query: 195 IDECP-EPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRA------- 246 +++ E + + V AL GLR I L W +D +++ + K + Sbjct: 173 LEDIKDEKIHTAVTLALHAGLRAGEICGLTWDNVDFEKKCIHIKQALQKIGKEIIIKPPK 232 Query: 247 -----IGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLS 301 + + + L ++ + + K ++ Sbjct: 233 SKTSIRTIYMTSYLYETLLEEYKRQEPLREAYKKLGNFV-CIHETGNPFCPDYFTHTFKK 291 Query: 302 ACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEM-VRRYAHLAPNHLTEH 360 G + RFHDLRHT+A+ L+Q+ + E+ G + ++ + YAH+ + Sbjct: 292 LVSCLGYPEIRFHDLRHTFATILLQAQTNPKIAAEILGHSNTKLFLNLYAHVLDEQKIKA 351 Query: 361 ARKIDDIFG 369 KI++I G Sbjct: 352 THKIEEILG 360 >UniRef50_C5TV13 Integrase family protein n=1 Tax=Desulfovibrio vulgaris RCH1 RepID=C5TV13_DESVU Length = 395 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 78/380 (20%), Positives = 149/380 (39%), Gaps = 25/380 (6%) Query: 5 RRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACL 64 + + ++ Y GK +E G + + + +A + +LG P + E Sbjct: 25 KPDRYFFIRYKT-DGKSKEEGAGWASEGMTSQKASQLRARITENIRLGRRPQ-SLAEMRE 82 Query: 65 RWLEEKA-----DKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIW 119 E + ++++ ++ + EFW +H+ + + + S + + + + Sbjct: 83 MMREAREQAAIEERRAANAATTMNEFWEKHYLPSSTLHKTPQTMKTE-SGYYAKWIRPVL 141 Query: 120 KQKVQAAIRK---GKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IK 174 + + + S T LA+I I A + P IK Sbjct: 142 GDSALSDLTPPLIEQVASNAMTAGRSAATIRHLLAIISQIWGMARNHEIVNGECPCTRIK 201 Query: 175 IPAVRNKRVRWLEKEEAKRLIDECPEPLKSV---VKFALATGLRKSNIINLEWQQIDMQR 231 P N+R+R+L + EA L+ E + K +L GLR I +L W ++ Sbjct: 202 KPRKDNRRMRFLTEAEASTLLVELEKRSKDTHDSALLSLFCGLRAGEIHSLTWTDLNFTS 261 Query: 232 RVAWVNPEESKSNRAIGVALNDTACKVL--RDQIGKHHKWVFVHTKAAKRADGTSTPAVR 289 ++ + K+ + + D +L R + ++VF AKR + T Sbjct: 262 GTIYIR--DPKNKHSRHAYMTDEVRSMLIERSKQLNATEYVFPAQNGAKRNWVSDTFERV 319 Query: 290 KMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRY 349 ++ + +R FH LRHT+ASWL+Q G PL + E+ G ++EM +RY Sbjct: 320 VDQLGLNDGITDSRQR-----VVFHTLRHTFASWLVQDGTPLYTVAELMGHTTLEMTKRY 374 Query: 350 AHLAPNHLTEHARKIDDIFG 369 +HL+P+ + A + Sbjct: 375 SHLSPDTVRAAALTLQGRLN 394 >UniRef50_A5CFJ0 Phage-related integrase n=19 Tax=Orientia tsutsugamushi RepID=A5CFJ0_ORITB Length = 442 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 65/348 (18%), Positives = 136/348 (39%), Gaps = 56/348 (16%) Query: 56 DVTFEEACLRWLEEKADK-KSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRK 114 ++TF + ++ E + +S R++ + ++ +I++ I + RK Sbjct: 118 ELTFRQVHEKYTEYSSHHHRSWKRTSERVKIYAAFLYNKKISEITKEDIQKIFDEITARK 177 Query: 115 TKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIK 174 T L + I A +W ++K PV Sbjct: 178 HYV---------------------------TANNILMNLSPIFNKAI-EWGLIDKNPVHG 209 Query: 175 IPAVRNK-RVRWLEKEEAKRLIDECPEP--------------LKSVVKF-ALATGLRKSN 218 I + + R R++ EE +RL+ E +++ F AL T R N Sbjct: 210 IKRHKQESRSRYVTNEEMERLMKVLVEKENSQLTEEQKQSKISETLFLFIALFTAARSGN 269 Query: 219 IINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQ-IGKHHKWVFVHTKAA 277 I+ + W +I + ++ + +SK+ + + + L D VL+++ + +W+ K Sbjct: 270 ILAMRWDEISLSEKIWCIPKTKSKNGKQLYIGLADKLIAVLQNRKLCSKSEWILPSVKDN 329 Query: 278 KRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEM 337 + +ST +W ++AGI + HDLR T+A+W+I +G + + ++ Sbjct: 330 SKHISSST---------IHRAWAKIRKKAGIPNVTIHDLRRTFATWMINNGETVDTISQI 380 Query: 338 GGWESIEMVRRYAHLAPNHLTEHARK-IDDIFGDNVPNMSHSEIMEDI 384 G + + Y + K ++++ PN+ +EI+ I Sbjct: 381 LGHSNTNTTKIYIIHSLAMAKIATNKVVENMLRIFGPNVCLNEILSGI 428 >UniRef50_Q72A00 Site-specific recombinase, phage integrase family n=2 Tax=Desulfovibrio vulgaris RepID=Q72A00_DESVH Length = 309 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 82/339 (24%), Positives = 142/339 (41%), Gaps = 39/339 (11%) Query: 36 ELHDKRKAELWRVEKLGDLPDVTFEEACLRWLEEK-ADKKSLDSDKSRIEFWLEHFEGIR 94 +L +A+ R+ K ++T +A + + A K S +D+S +E G Sbjct: 4 QLASALRADAVRLSKQVVRANMTVGDAWTLYCRDWLASKSSYKTDRSLYLKHIEPVIG-- 61 Query: 95 LKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIK 154 +R+ E+ + +R+ + +S QT+ + ++K Sbjct: 62 -----------------SRRMDEVKTVDINELLRRMGD--------LSPQTRVHAVGLVK 96 Query: 155 AILRAAERDWKWLEKAPVIKI--PAVRNKRVRWLEKEEAKRLIDEC---PEPLKSVVKFA 209 + R + P + V N R+R+L +EA+ L++E V + + Sbjct: 97 RLYRRMAGWGVYHGPTPTDGVVVKRVDNARMRFLSPKEARWLLEELDCRSPQFADVCRVS 156 Query: 210 LATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKW 269 L GLR I +L+ Q +++ RV V +S S ++ + +VL + Sbjct: 157 LFAGLRLREIFSLKVQHVNIDARVIAVMDAKSGS---RMASMTEDLARVLARYVVGRRPE 213 Query: 270 VFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGV 329 FV TKA+ T ++ D + + R FH LRHT+ASWL+Q GV Sbjct: 214 EFVFTKASGEGMRTINQTFVRVVRDLELNDGVDDARH---KVVFHTLRHTFASWLVQRGV 270 Query: 330 PLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIF 368 PL + ++ G +EM RRYA LAP+ E ++D I Sbjct: 271 PLYTVADLMGHSVVEMTRRYAKLAPDTRREAVNQLDGIL 309 >UniRef50_C9M987 Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M987_9BACT Length = 391 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 72/318 (22%), Positives = 136/318 (42%), Gaps = 35/318 (11%) Query: 68 EEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAI 127 EE+ +K+ + S +F+ E + ++ + + + + K +A Sbjct: 87 EERLAEKT--NTISLRKFFEEIYFPKIRRERPKTAQRTETNFLRILKEDLSKPLASISAE 144 Query: 128 RKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKRVRWLE 187 R K + + + ++ I+A L A +I +R+R+L Sbjct: 145 RIIKIREQLLRRGLGLTSVKRYENEIRASLNYAASQGLIEPIKVCEQIKCETTQRIRYLT 204 Query: 188 KEEAKRLIDECPEP------------------LKSVVKFALATGLRKSNIINLEWQQIDM 229 +E +RL E L+ ++ +L TG+R+ ++ LEW+ ID Sbjct: 205 PDEEERLQKALKERDEELRKTHKNIRGRYADYLEPLITLSLKTGIRRGAMLRLEWRDIDF 264 Query: 230 QRRVAWVNPEESKSNRAIGVALNDTACKVL---RDQIGKHHKWVFVHTKAAKRADGTSTP 286 + V E K+ ++ + L+ A + L R+Q + +K+VF + Sbjct: 265 AAKTILVRGEICKTGKSRRIPLSPIAFETLKAWREQQPQENKYVFPSAYTNQ-------- 316 Query: 287 AVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMV 346 + K +W + RA I +F +HDLRH +AS L+ +GV L+ ++E+ G ++EM Sbjct: 317 ----PKKHCKCAWKNLLIRANITNFHWHDLRHDFASKLVMAGVDLNTVRELLGHSTLEMT 372 Query: 347 RRYAHLAPNHLTEHARKI 364 RYAHLAP+ L+ + Sbjct: 373 LRYAHLAPSKLSAAIETL 390 >UniRef50_C3IU95 DNA integration/recombination/inversion protein n=2 Tax=Bacillus thuringiensis RepID=C3IU95_BACTU Length = 392 Score = 165 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 67/390 (17%), Positives = 142/390 (36%), Gaps = 69/390 (17%) Query: 18 GGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRWLEEKADK---K 74 G ++ K+ G K K++AQ + + E+ + + PD+ F++ WL + Sbjct: 28 GKRKQKKVRGFKTKKEAQLAAARIEQEVANGTYINE-PDILFKDFVQEWLNIYSKSTKIS 86 Query: 75 SLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELP 134 SL + + ++ F I++KDI++ +A++ +H++ + A Sbjct: 87 SLRVRQKQSNKLVDFFANIKMKDITKKMYQTALNDLHDKGYAFNTLDGIHTAG------- 139 Query: 135 VYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKIPAV---------RNKRV 183 + I + A + + ++ P +K+P K + Sbjct: 140 -------------------RMIFKKAI-ELQIIKSNPTDNVKLPRKVETVEDIENDKKAI 179 Query: 184 RWLEKEEAKRLIDECPEP----LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNP- 238 ++LEKEE + E +GLR ++ L+W +D + + Sbjct: 180 KYLEKEELAHFLQVAKEKGLDNDYVFFSILAYSGLRAGELLALKWTDVDFENNTIKITKT 239 Query: 239 ---------------EESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGT 283 ++K + ++ K+L+ K ++ + ++T+ G Sbjct: 240 LYNPDNNSQHYHLLTPKTK-GSIRTIKMDQGIMKLLKSHKAKQNE-LKLYTRPQYVDQGF 297 Query: 284 STPAVRKMRIDSKTSWLSACRRAGI----EDFRFHDLRHTWASWLIQSGVPLSVLQEMGG 339 K R + ++ H RHT S LI++GV + +Q+ G Sbjct: 298 VITKASGYPEVMKMIQNRLKRLIKLSNITKNITPHSFRHTHTSLLIEAGVGIKEIQQRLG 357 Query: 340 WESIEMVR-RYAHLAPNHLTEHARKIDDIF 368 IE YAH+ N + ++K ++ Sbjct: 358 HTDIETTMNIYAHMTKNMEEKASQKFSELM 387 >UniRef50_A8L4Q7 Integrase family protein n=9 Tax=Actinomycetales RepID=A8L4Q7_FRASN Length = 477 Score = 165 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 81/389 (20%), Positives = 146/389 (37%), Gaps = 43/389 (11%) Query: 2 SLFRR--NEIW--YASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDV 57 +LF+R + +W A GKR ++++ K +++ +E K + + Sbjct: 92 ALFQRASDGLWVGRADLGWVDGKRSRKTVYGKTEKECREKLTKVQRAAELGVNVT-AERR 150 Query: 58 TFEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKE 117 T WL+ K + S + + I + R+ K Sbjct: 151 TVAVWLGEWLDIKEGDGTRASTLRAYRWLIN------------MHIVPVIGRVQLDKLTP 198 Query: 118 IWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAER-DWKWLEKAPVIKIP 176 + +++ A+ +K +S + ++I+ L AER D A +K P Sbjct: 199 LDVRRLVASAKKS---------GLSAGSVRHVHSLIRNALAEAERLDLVARNVAKAVKAP 249 Query: 177 AVRNKRVRWLEKEEAKRLIDECP-EPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAW 235 ++ VR L EEA+RL++ E L++V L GLR+ I+ L W +D+ Sbjct: 250 PTPHREVRALRPEEARRLVEVLRGERLEAVFACGLMLGLRRGEILGLRWSDVDLDGATLH 309 Query: 236 VNPEE-----------SKSNRA-IGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGT 283 V +K+ R+ + + +LR A Sbjct: 310 VRQTLQRVDGSLMFVPAKTERSHRRLPIPPKLVTILRRHRATQTAERTGLGDAWTETGLV 369 Query: 284 STPAVRKM--RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWE 341 T ++ + + R+AG+ R HDLRH +AS L GVP + E+ G Sbjct: 370 FTSSIGTPLEPRNVNRRFDVLRRQAGLPWLRLHDLRHAFASMLFAEGVPARTVMELLGHS 429 Query: 342 SIEMVR-RYAHLAPNHLTEHARKIDDIFG 369 +I++ Y H+ P + ++D IF Sbjct: 430 TIQLTMNTYTHVMPETQRDAVGRLDRIFN 458 >UniRef50_B1B8Q2 Phage integrase n=1 Tax=Clostridium botulinum C str. Eklund RepID=B1B8Q2_CLOBO Length = 366 Score = 165 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 55/363 (15%), Positives = 128/363 (35%), Gaps = 56/363 (15%) Query: 30 DKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRWLEEKAD----KKSLDSDKSRIEF 85 K++ + + ++ + + + +T +E WLE + K I+ Sbjct: 36 TKKECEAALAELINQIEKGSIITN-DKMTVKEYIEYWLETYPKNNCSPSTYKRYKFFIKD 94 Query: 86 WLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQT 145 + + +L ++ I + + +S T Sbjct: 95 IINYIGKHKLSKLNPMIIQKFYEDL-------------------------LSDRNISNNT 129 Query: 146 KAKHLAMIKAILRAAERDWKWLEKAPV--IKIPAVRNKRVRWLEKEEAKRLIDECPEP-L 202 K M+ L+ A++ W+ + P + P + +++ + +E +D E L Sbjct: 130 VIKTHRMLHLALKHAQQ-WQLINNNPCDLVTPPKATKQEMKYWQPDEINIYLDILKEEFL 188 Query: 203 KSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESK------------SNRAIGVA 250 + A+ TG R + ++W +D+ + ++ + N + Sbjct: 189 YPAIFLAIQTGCRVGELCAIKWSDVDLIDKTIRIDKTLQRIDCKLALKYPKTQNSIRTIT 248 Query: 251 LNDTACKVLRD----QIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRA 306 L +TA L++ +I K K+ DG + + Sbjct: 249 LLETAITFLKNLKKNRIEKKLKYGIELDYVLCWEDGRPIDP-----HYISQHFPKLLDKY 303 Query: 307 GIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIE-MVRRYAHLAPNHLTEHARKID 365 + RFHDLRH+ A+ L+++GV ++ + G ++ + Y+H++ E K++ Sbjct: 304 NLPKIRFHDLRHSHATLLLKAGVNAKIISKRLGHSTVAFTLDTYSHVSTKMQKEEMSKVE 363 Query: 366 DIF 368 ++ Sbjct: 364 NLL 366 >UniRef50_A4J0G7 Phage integrase family protein n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J0G7_DESRM Length = 388 Score = 165 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 81/400 (20%), Positives = 155/400 (38%), Gaps = 47/400 (11%) Query: 1 MSLFR---RNEIWYASYSLP---GGKRIKE-SLGTKDKRQAQELHDKRKAELWRVEKLGD 53 M+ + + + Y GKRI++ G K +R A+ + + + + Sbjct: 1 MATIKFNEKKGYYEVRYDAGFDGNGKRIQKYKGGFKKERDAKLFAAQLTVNISQGTHIEP 60 Query: 54 LPDVTFEEACLRWLEEKADKKSLDSDKSRIEFWL----EHFEGIRLKDISEAKIYSAVSR 109 F E WLEEK + S S + GI+L D+ A I S+ Sbjct: 61 NKMFLF-EYLNNWLEEKKETISPTSYCGYEVNIRCHINPYIGGIKLSDLRAAHIRGLYSK 119 Query: 110 MHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEK 169 + + +I +K KP+S + ++ L A R+ + + K Sbjct: 120 LQKAREIKIDGEKRSF-------------KPLSGTSIRYVHRVLSKALEDAYRE-ETIPK 165 Query: 170 APV--IKIPAVRNKRVRWLEKEEAKRLIDECPEP-LKSVVKFALATGLRKSNIINLEWQQ 226 P + P +L ++ + ++D+ E L V ++ G R+ ++ L+W Sbjct: 166 NPAKLVTPPTKNKFEAGFLSTKQIREMLDKLREDALYMPVYLSVVLGARRGEVLGLQWSD 225 Query: 227 IDMQRRVAWVN------------PEESKSNRA-IGVALNDTACKVLRDQIGK--HHKWVF 271 +DM+ ++ + E++K++ + + + D K L++ K + Sbjct: 226 VDMENKLIHIRHNLIMDNGNPVLREKTKTDSSNRVIVVTDRLIKALKEHKLKLKQKEMKL 285 Query: 272 VHTKAAKRADGTSTPAVRKMRIDSK--TSWLSACRRAGIEDFRFHDLRHTWASWLIQSGV 329 H + ++D T K S S+ ++ G+ + RFHDLRH+ A+ +I V Sbjct: 286 QHGQLYHKSDFVCTWPDGKPFNPSHLSRSFSLRLQKYGLPNIRFHDLRHSNAALMIAQNV 345 Query: 330 PLSVLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIF 368 P+ + G +I++ Y H + E A KID Sbjct: 346 PMKGASDRLGHSTIQITNDLYGHTERSVQEEIAIKIDQAI 385 >UniRef50_A5N1F6 Integrase-related protein n=3 Tax=Clostridia RepID=A5N1F6_CLOK5 Length = 416 Score = 165 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 73/382 (19%), Positives = 146/382 (38%), Gaps = 52/382 (13%) Query: 29 KDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRWLEEKADKKSLDSDKSRIEFWLE 88 K +A + K E+ + L D +TFEE +WL++ A+ + L Sbjct: 42 KQLEEANKQWVLFKDEIEKGIYL-DSGKITFEEFIKKWLKDYAEAE------------LA 88 Query: 89 HFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAK 148 R K++ +I A+ + K + + + +R+ +P +S +T Sbjct: 89 PKTLYRYKELLYTRIIPALGHIKLNKLQPTHITEFYSNLREDGIRNDGKPGGLSERTILH 148 Query: 149 HLAMIKAILRAAERDWKWLEKAPVIKI--PAVRNKRVRWLEKEE---AKRLIDECPEPLK 203 H +I +IL A + W ++ P +++ P V K R EE +LI+ P K Sbjct: 149 HHRLISSILATAIQ-WGFILNNPALRLKAPKVEKKEARHFNIEETAYVLQLIENEPIKYK 207 Query: 204 SVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNP------------EESKSNRAIGVAL 251 +++ A+ G+R+ + L W I+ +N + +K+ +++ Sbjct: 208 TMITLAIYGGMREGELTALTWSDINFDDCTIKINKSLQHLPGRDTFIKSTKTETTRLISI 267 Query: 252 NDTACKVLRDQIG-------------KHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTS 298 + +L++ +F T T + K S Sbjct: 268 PISVMTLLKEYKRWQNTEKLKLGNLWHDSDALFTATDGKSIFPSTISKWFLKFIRKHNES 327 Query: 299 WLSACR-------RAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGW-ESIEMVRRYA 350 ++ + + +++ FH LRHT A+ LI GV ++ + + G + Y+ Sbjct: 328 IINDDKIPPKDKSKYLLKEVNFHGLRHTSATLLINQGVDITTVSKRLGHARTSTTTDIYS 387 Query: 351 HLAPNHLTEHARKIDDIFGDNV 372 H E A K++++F + V Sbjct: 388 HSLQKADVEAADKLENLFNNEV 409 >UniRef50_B2K361 Integrase family protein n=16 Tax=Gammaproteobacteria RepID=B2K361_YERPB Length = 351 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 86/399 (21%), Positives = 154/399 (38%), Gaps = 71/399 (17%) Query: 1 MSLFR-RNEIWYASYSLPG------GKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGD 53 M++ + ++ W GKRI++ TK + A E H ++E++ D Sbjct: 1 MTVRKLQSGEWIVDVYTINRSDGKRGKRIRKKFATKGEALAFERH--------KLEEIQD 52 Query: 54 LPDVTFEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNR 113 P WL E+ DK+SL+ I W + + + Sbjct: 53 KP----------WLGEEKDKRSLNE---LISTWYNAHGITLDDGLRRKDAMNHFYECMGK 99 Query: 114 KTKEIWKQKVQAAIR----KGKELPVYEPKPVSTQTKAKHLAMIKAILRAAER--DWKWL 167 + ++ + R KG+ V+ +T LA +A+ ER +WK L Sbjct: 100 PLATEFSAQLFSQYREKRLKGELARSTRVTKVAPRTLNLELAYFRAMFNELERLGEWKLL 159 Query: 168 EKAPVIKIPAVRNKRVRWLEKEEAKRLIDECP----EPLKSVVKFALATGLRKSNIINLE 223 ++ + +L +++ + L+DEC E L +VVK L+TG R S L+ Sbjct: 160 NPIKSVRAFKTEESEMAFLTRDQIELLLDECKKSSIECLATVVKICLSTGARWSEAEGLK 219 Query: 224 WQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGT 283 Q+ + ++ ++ ++K + V ++ L K +F A Sbjct: 220 LSQL-TEHKITFI---KTKGRKNRTVPISKELYDEL---PKKGKSGLFTACYA------- 265 Query: 284 STPAVRKMRIDSKTSWLSACRRAGI---EDFRFHDLRHTWASWLIQSGVPLSVLQEMGGW 340 + A +R+ I H LRHT+AS + G + VLQ + G Sbjct: 266 --------------EFRRALKRSEIELPPGQLSHVLRHTFASHFMMKGGNILVLQRILGH 311 Query: 341 ESIEMVRRYAHLAPNHLTEHARKIDDIFGDNVPNMSHSE 379 I+M RY+H +P+HL E R + ++V +S + Sbjct: 312 TDIKMTMRYSHFSPDHLDEALRF--NPLAESVAKVSQEQ 348 >UniRef50_B8D1P6 Phage integrase family protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1P6_HALOH Length = 391 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 71/393 (18%), Positives = 163/393 (41%), Gaps = 44/393 (11%) Query: 2 SLFRRNEIWYASYSLPG-----GKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPD 56 ++ +R + + G GK+ ++ K K++ + + K +L+ + + Sbjct: 9 TIVKRKDGLWQGAVTIGTDPQTGKQKRKYFYGKTKKEVAKKMTELKMKLFNGTY-SEPSE 67 Query: 57 VTFEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTK 116 + + RW+E + + + ++ H DI E K+ + R+ + Sbjct: 68 MKLIDWLHRWIEGRKSTLAYSTYRNYKVMINNHLAD----DIGETKL----KDLKARQVQ 119 Query: 117 EIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKA--PVIK 174 E+ K++ VY +S +T + + L A ++ + + ++ Sbjct: 120 ELLNDKLEKGK-------VYGEGGLSPRTVKYIYSTLHTALEQAVKE-NMIPRNICKAVE 171 Query: 175 IPAV-RNKRVRWLEKEEAKRLIDECPEPLKSVVK-FALATGLRKSNIINLEWQQIDMQRR 232 +P K++ K++ + + ++ AL TG+R+ ++ L+W+ IDM+++ Sbjct: 172 VPKKQEEKKLHTWNKKQVNIFLKAARDYKYFILHYLALNTGMRRGELLGLQWKDIDMEKK 231 Query: 233 VAWVNPE-------------ESKSNRAIGVALNDTACKVLRD-QIGKHHKWVFVHTKAAK 278 V + ++KS + + D + L+ QI + K + + K Sbjct: 232 RIEVKRQLARTDEGLIFKKVKTKSGN-RTIPITDNVVRELKRHQIKQGEKRLALGEAYNK 290 Query: 279 RADGTSTPAVRKM--RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQE 336 +AD ++ + + + G+ + R+HDLRHT+A+ +++ P+ LQ+ Sbjct: 291 KADLVASNGIGNPIDPRNLVRDFKDIIEETGLPEIRYHDLRHTFATLFLEAKGPIKTLQQ 350 Query: 337 MGGWESIEMV-RRYAHLAPNHLTEHARKIDDIF 368 + G SI + Y+H+ L E RK++ +F Sbjct: 351 ILGHSSITVTIDTYSHVTEEMLIEAERKMETMF 383 >UniRef50_Q2STX2 Site-specific recombinase, phage integrase family n=1 Tax=Burkholderia thailandensis E264 RepID=Q2STX2_BURTA Length = 222 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 62/225 (27%), Positives = 95/225 (42%), Gaps = 26/225 (11%) Query: 141 VSTQTKAKHLAMIKAILRAAERDWKW-LEKAPV--IKIPAVRNKRVRWLEKEEAKRLIDE 197 VS+ T + L ++ + A R+W L PV I+ P R R L E LI Sbjct: 13 VSSGTALRELQLLGHVFSVAIREWGAQLPSNPVSLIRKPRSGKARDRVLTTSERTALISA 72 Query: 198 C----PEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALND 253 C +K VV FAL T R+ I+ L WQ +D+ RR A + +K+ + + L+ Sbjct: 73 CSQCHNPWIKPVVIFALETAARRGEILALTWQDVDLARRTATLQI--TKAGQPRRIPLSA 130 Query: 254 TACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRF 313 T +L VF + K ++ A RAGI +F F Sbjct: 131 TCVTMLEALPRSLDGRVFPVSMET-----------------VKQAYERAVARAGITNFTF 173 Query: 314 HDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLT 358 HDLRH + L + G+ + L+ + G + M++RY + L Sbjct: 174 HDLRHDALTRLAKQGLSILELRAISGHATANMLQRYVSIDAGELA 218 >UniRef50_Q2LQY7 Integrase family protein n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LQY7_SYNAS Length = 421 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 67/359 (18%), Positives = 143/359 (39%), Gaps = 47/359 (13%) Query: 31 KRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRWLEEKADKKSLDSDKSRIEFWL-EH 89 + +A++ + ++AE+ + EK F++ + + A KKS D ++ + W+ Sbjct: 95 REKARKQEEAKQAEVEKKEKESITFGKYFKDT---YFPDMAHKKSKDVEQFIYDKWICPL 151 Query: 90 FEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKH 149 +R+ D+++ + M E + +T Sbjct: 152 IGKLRINDLTDFHLKKIKKNM--------------------------EDSGKAVRTIHYA 185 Query: 150 LAMIKAILRAAERDWKWLEKAPV--IKIPAVRNKRVRWLEKEEAKRLIDECPEPLKSVVK 207 A++ + A +D P +K+P + N++ R+L +EA L+ + + + Sbjct: 186 FAIVSQVWNRARKDKIVQRDCPTRDVKLPRIDNQKKRFLSPQEANDLLAYLKNKSRQLYE 245 Query: 208 FA---LATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQI- 263 A L TG R + L W++I+++ + +KS + V + + + Sbjct: 246 LAYLSLYTGARFGELAGLTWRRINLKDGS--IIFRNTKSGKDRTVFMTEGVKALFEAMPE 303 Query: 264 GKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASW 323 GK +F K + ++T + + + FH LRHT ASW Sbjct: 304 GKADDLIFPDRKGKRLFSVSATFDRAIADLGLNKGVVDPRDK-----ITFHSLRHTHASW 358 Query: 324 LIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIFGDNVPNMSHSEIME 382 L+ +G L +++E+ G +M RY+H A + + + ++ +P M+ S+ + Sbjct: 359 LVNNGTNLFLVKEILGHADFKMTTRYSHPAADSIRQAMVGLEK----KIPGMAESQTGQ 413 >UniRef50_Q3SUE5 Phage integrase n=6 Tax=Alphaproteobacteria RepID=Q3SUE5_NITWN Length = 400 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 70/353 (19%), Positives = 130/353 (36%), Gaps = 49/353 (13%) Query: 33 QAQELHDKRKAELWR-----VEKLGDLPDVTFEEACLRWLEEKADK---KSLDSDKSRIE 84 A+E + K E+ + E+ + R+LEE A K ++ D S + Sbjct: 67 AAREEAKRLKREIDQGRDPMAERDEARESPNVRQLIDRYLEEHASKLAKRNRDDQASMLR 126 Query: 85 FWLEH-FEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVST 143 +E + + +I + + ++ + + + Sbjct: 127 KLVEPAWGPRKAAEIQPDDVDRLLCQIAGGTLGK-------------------RGRKPTP 167 Query: 144 QTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPA-VRNKRVRWLEKEEAKRL---IDECP 199 + +++ + A R W+ P R R+L +E RL +D P Sbjct: 168 VRANRVGEILRKMFNLAIR-WRIRTDNPAAGFARNAEAPRDRYLSTDEIGRLSAALDAHP 226 Query: 200 EPLKS-VVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKV 258 + V+ L TG R+ ++ W Q D+ V +K R ++ +A + Sbjct: 227 NRRAADAVRLILLTGARRGEVLGARWDQFDLDAAVWIKPAATTKQRRLHRAPISASAAAL 286 Query: 259 LRD---QIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHD 315 LR ++ K +WVF K D K W +A + R HD Sbjct: 287 LRTIRLRVPKDCEWVFPGDAEGKPL------------QDIKRFWEDVRTKAELPAVRTHD 334 Query: 316 LRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIF 368 LRHT+AS L+ G+ L ++ ++ G ++ +RYAHL + L ++ D+ Sbjct: 335 LRHTFASLLVSGGMTLPMIGKLLGHTQVQTTQRYAHLLDDPLRAGLEQVGDML 387 >UniRef50_B6G0S2 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6G0S2_9CLOT Length = 376 Score = 164 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 76/406 (18%), Positives = 145/406 (35%), Gaps = 80/406 (19%) Query: 2 SLFRRNEIW--YASYSLPGGKR--IKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDV 57 + +R + Y GKR I++S T +K +A + +K E + E L D+ Sbjct: 11 GVRKRGNTYHYYFDGKTIDGKRNKIEKSAKTSNKSEALKQLEKAIEEYYMSEIDFTLSDI 70 Query: 58 TFEEACLRWLEEKADK----KSLDSDKSRIEF-WLEHFEGIRLKDISEAKIYSAVSRMHN 112 +F EA ++L E + + K ++ ++ E LKDI I + + M Sbjct: 71 SFAEAREKFLSEYVANDLKDSTYTNYKQKLNKPQIKVLEIYLLKDIRAKHIQNIIDYM-- 128 Query: 113 RKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV 172 S L I ++ R + ++ P Sbjct: 129 ------------------------ALNGFSKNMVKNTLRTISSLFNFCIRA-ELIKDNPC 163 Query: 173 IKI----PAVRNKRVRWLEKEEAKRLIDECPE-PLKSVVKFALATGLRKSNIINLEWQQI 227 K+ + +R L +E KR+++ + L TG+R+ L W+ + Sbjct: 164 DKVVLPSKLTQPERKVALTNKEVKRILNRFKNTHWYLSLMLPLYTGMRRGECCGLRWKNV 223 Query: 228 DMQRRVAWVN---------------PEESKSNRAIGVALNDTACKVLRDQIGKHHK---- 268 D+ + + +V P+ S R I + L + L+ Q+ ++ Sbjct: 224 DLDKGIIYVRENLTQDKGKKWIISTPKTKSSIRTINIPLP--LLEALKWQLERNKSNNVA 281 Query: 269 -----WVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASW 323 V V + + T R + D GI+ F +H+LRHT+A+ Sbjct: 282 TNSDTHVLVRDNGSIITNDTLKYLSRVINYD-----------LGIK-FNYHNLRHTYATL 329 Query: 324 LIQSGVPLSVLQEMGGWESIEMVR-RYAHLAPNHLTEHARKIDDIF 368 LI+ G + + + G SI+ Y + N + ++ ++ Sbjct: 330 LIEKGANIKDVSVLLGHASIKTTMDIYVNNTDNMRDKTLNILNTLY 375 >UniRef50_C8R239 Integrase family protein n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R239_9DELT Length = 332 Score = 164 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 68/369 (18%), Positives = 138/369 (37%), Gaps = 54/369 (14%) Query: 1 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKL--GDLPDVT 58 M+ F + + + + + A+ + +A + R + T Sbjct: 1 MATFEKRGQYQIRAKVRKHGYRTITKTFNNVADAKAWARQVEAAMDRGAYIPVAAAEKNT 60 Query: 59 FEEACLRWLEEKADK--KSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTK 116 R+ +E + ++ + +R+ E + L + A++ + Sbjct: 61 LRMVLERYRKEICPRLARAGRDEFARLNRLTEALGDLSLAALQPAEVARYRDQ------- 113 Query: 117 EIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVI--- 173 + QT L ++ +L+A DW ++ Sbjct: 114 -------------------RLKAGAAPQTVKHDLGLLNRVLKACVMDWGIPLPHGIVTAQ 154 Query: 174 -KIPAVRNKRVRWLEKEEAKRLIDEC----PEPLKSVVKFALATGLRKSNIINLEWQQID 228 + P+ + R R LE E ++L+ ++ ++ AL T R++ I ++ W+ I+ Sbjct: 155 VRKPSPPSGRDRRLESREEEKLLAAAQASKSREIEKIITIALETAARRAEIASMRWEHIN 214 Query: 229 MQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAV 288 + +R+ ++ +K+ A V L+ A VL+ +R DG Sbjct: 215 LDKRIWFIPAAATKTKTARTVPLSTGAMAVLQGL--------------PRRIDGQVWSFS 260 Query: 289 RKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRR 348 I ++ C+RA IED RFHDLRH S L + G+ + + + G + ++M++R Sbjct: 261 HPDGIT--QAFDRICKRAEIEDLRFHDLRHEATSRLFEKGLNMMEVAAITGHKDLKMLKR 318 Query: 349 YAHLAPNHL 357 Y HL L Sbjct: 319 YTHLKAEDL 327 >UniRef50_A9VYK3 Integrase family protein n=2 Tax=Methylobacterium RepID=A9VYK3_METEP Length = 399 Score = 164 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 77/379 (20%), Positives = 141/379 (37%), Gaps = 45/379 (11%) Query: 2 SLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEE 61 ++ R + W+ G+ +++SL T+ + A+ EL + G P +T Sbjct: 3 GIYLRGKTWWGRVQ-KDGQDLRQSLETRSESVARGRLKVWLDELETLAW-GGKPRLTVNA 60 Query: 62 ACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQ 121 + +E + + G+ + + + + + K+ Sbjct: 61 VMDEFQKEHGPTLRPSTVRRY---------GVSIDHLDAFLGDKLLLSVRSSDLKDFETA 111 Query: 122 KVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNK 181 + A S T + LA + + A + +W + PVI R K Sbjct: 112 RRTA--------------GASAPTVRRDLACLSTVFGFAI-EKEWADINPVIPFLRQRAK 156 Query: 182 R--------VRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRV 233 R R+L + E RLI+ + + FA+ TGLR+ +L W+Q+D+ R+ Sbjct: 157 RGLRESPPRTRYLTRAEEARLIESALPYVADAILFAIYTGLRQEEQFSLTWEQVDLARKH 216 Query: 234 AWVNPEESKSNRAIGVALNDTACKVLRD-QIGKHHKWVFVHTKA-AKRADGTSTPAVRKM 291 ++ E +K R V L A VL+ +VF H A R + P+ Sbjct: 217 VTISAETAKGKRERTVILLAPALAVLKRIPRHLQSPFVFHHGAATTTRGARRALPSTSTK 276 Query: 292 RIDSKTSW-------LSACRRAGIEDFRFHDLRHTWASWLI-QSGVPLSVLQEMGGWESI 343 + + + +A +RA + R+HDLR T L+ + L ++++ G S+ Sbjct: 277 KDNDGERFNHLDRGLRNAAKRAKVPLLRWHDLRRTHGCRLLQEEKWTLEMVRDQLGHRSV 336 Query: 344 EMVRR-YAHLAPNHLTEHA 361 R YA L A Sbjct: 337 VQTERSYAFLEVEDRRMAA 355 >UniRef50_A8IF33 Putative phage HP1 integrase n=1 Tax=Azorhizobium caulinodans ORS 571 RepID=A8IF33_AZOC5 Length = 373 Score = 164 bits (414), Expect = 7e-39, Method: Composition-based stats. Identities = 84/375 (22%), Positives = 150/375 (40%), Gaps = 40/375 (10%) Query: 1 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFE 60 M++ R W A ++ G+R +E+ ++ + +A EL+ + A P + Sbjct: 26 MAVRPRGGSWQADITVK-GQRYRETFDSEAEAKAWELNARAAAVKGEPIPRPIAPSKGTD 84 Query: 61 EACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 + E+ A S K+ +FW S+AK + + K+ Sbjct: 85 APRGQSREDGALTLSAVMWKAYDKFWK--------GGRSDAKAAVNIRQAEAYFGKDCPV 136 Query: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRN 180 ++ G + S T + LA++ LR A D + K P I + Sbjct: 137 SRIDTDAIDGFVADCIAKRN-SNGTVNRKLAILSKSLRYAF-DRGLIPKMPKIDRKSEGV 194 Query: 181 KRVRWLEKEEAKRLIDECPEPLKS----VVKFALATGLRKSNIINLEWQQIDMQRRVAWV 236 R RWL+++E K L+D K V++ + TG+R S + L + +D++ + Sbjct: 195 GRFRWLDEDEEKALLDTFRSWGKDDHAEVIETLIDTGMRPSELYRLTPRDVDLKTGAIMI 254 Query: 237 NPEESKSNRAIGVALNDTACKVLRDQIGK---HHKWVFVHTKAAKRADGTSTPAVRKMRI 293 +K++ V +L+ +IG + +F + Sbjct: 255 WM--TKTDNPRTVYATKRVKAILQRRIGAVTAPTEKLFPYDN-----------------F 295 Query: 294 DSKTSWLSACRRAGI---EDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYA 350 + +W A G+ F + RHT AS L+Q GVP++V++E G SI+M RYA Sbjct: 296 WMRHTWDRARLHLGMENDPHFVPYICRHTCASRLVQRGVPINVVKEWLGHTSIQMTMRYA 355 Query: 351 HLAPNHLTEHARKID 365 LAP +L A ++ Sbjct: 356 FLAPKNLMSAASVLE 370 >UniRef50_B4BIA4 Integrase family protein n=2 Tax=Geobacillus RepID=B4BIA4_9BACI Length = 384 Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats. Identities = 69/407 (16%), Positives = 141/407 (34%), Gaps = 67/407 (16%) Query: 3 LFRRNEIWYASYSL----PGGKRIKESLG-TKDKRQAQELHDKRKAELWRVEKLGDLPDV 57 + + + +Y + GKR + S G + K +A++ K K ++ + + Sbjct: 8 IKEKKKGFYFRIDVGKDPVTGKRKQASFGPFRTKTEAKKELLKIKNQVDDGSYFKESTE- 66 Query: 58 TFEEACLRWLEEKADKK-SLDSDKSR----IEFWLEHFEGIRLKDISEAKIYSAVSRMHN 112 F RW + + + KSR +++F+ ++ +I+ I S Sbjct: 67 DFSMFMERWFNTSYKRTVEITTAKSREYVIRNHIMKYFQHKKINEITTFDIDS------- 119 Query: 113 RKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV 172 + K+ S + ++ A + W ++ PV Sbjct: 120 -----FYVDKLDTGY--------------SGAYIRQMHNLLNQAFDQAVK-WSLVKVNPV 159 Query: 173 --IKIPAVRNKRVRWLEKEEAKRLIDECPEPLKSV-VKFALATGLRKSNIINLEWQQIDM 229 K P V+++ +E R ++ + + A+ TG+R+ ++ L+W +D Sbjct: 160 KNAKPPKVKSEEKITWTVDEVNRFLNLIKDSSMEIPYLLAIFTGMRRGEVLGLKWDDVDF 219 Query: 230 QRRVAWVN---------------PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHT 274 + + + P+ KS R I + + VL+ K F Sbjct: 220 ENKKIRIKRSLCFVSGKGLIFKEPKTKKSKRQISI--SQHVVNVLKKHKQKQE---FQKE 274 Query: 275 K-AAKRADGTSTPAVRKMRI----DSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGV 329 K + D + + + A + FHDLRHT A+ L+Q G Sbjct: 275 KLGVQYQDNNLIVCTDDGKPLDPRNLLRQFYRLIEEANVPRISFHDLRHTHATILMQQGE 334 Query: 330 PLSVLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIFGDNVPNM 375 V+ E G + + Y+H++ + + A K ++ N Sbjct: 335 NPKVVSERLGHSRVGITLDLYSHVSDDLQEQAAEKFENALLKQSQNP 381 >UniRef50_D1CFY4 Integrase family protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFY4_THET1 Length = 363 Score = 163 bits (413), Expect = 9e-39, Method: Composition-based stats. Identities = 71/372 (19%), Positives = 132/372 (35%), Gaps = 46/372 (12%) Query: 2 SLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEE 61 + +R + A + G ++ S+ K + + Q + A + + VT E Sbjct: 8 KIIKRGNAYRAQVQING---VRHSITGKTRAEVQRKRRELLAAADQGI-MPARTRVTVAE 63 Query: 62 ACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQ 121 WLE L D + V + K ++ Sbjct: 64 FLSHWLE----------------IIKPQVRPATLADYQNSVRNHIVPALGTIKLTKLEPA 107 Query: 122 KVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKIPAVR 179 +Q K +S +T I ++ A R W L + + P V Sbjct: 108 HLQELY------SQLLAKGLSAKTVRNIHGTIHKAIKDAAR-WGMLPRNVADIARPPKVS 160 Query: 180 NKRVRWLEKEEAKRLIDECP-EPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVN- 237 + ++ L E+ + L+ C + ++ A+ATG R+ ++ L W ID+QR V + Sbjct: 161 RQELQCLTPEQVRLLMQACAGTRYEPLLGLAIATGARQGELLGLRWADIDLQRGVVQITR 220 Query: 238 ----------PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPA 287 P+ S R++ V ++ ++LR + + Sbjct: 221 QLTRQGTFSEPKTSSGKRSVHVPVS--TVELLRRHRSLQLQERLSAGDRWQDQGLVFANT 278 Query: 288 VRKMR--IDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEM 345 + + +W ++AG+ FH LRHT AS L++ GV ++Q+ G I + Sbjct: 279 LGGPMDARNLIRAWHRILQQAGLPRMPFHSLRHTSASLLLRQGVSPRLIQQRLGHADIAV 338 Query: 346 V-RRYAHLAPNH 356 + YAHL + Sbjct: 339 TLQVYAHLVEDM 350 >UniRef50_C9XJT1 Integrase n=6 Tax=Clostridium difficile RepID=C9XJT1_CLODC Length = 380 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 70/391 (17%), Positives = 155/391 (39%), Gaps = 54/391 (13%) Query: 3 LFRRNEIW--YASY-SLPGGKRIKESLGTKDKR-QAQELHDKRKAELWRVEKLGDLPDVT 58 + +RN+ + Y + GKR ++++GT DK+ +A + ++ K L+ + ++T Sbjct: 15 IRKRNKNYVVYLEFEDEKTGKRKQKNMGTFDKKREASKRLNEVKESLYN-DGFLVPSEIT 73 Query: 59 FEEACLRWLEEKADKKSLDSDKSRI----EFWLEHFEGIRLKDISEAKIYSAVSRMHNRK 114 E L +L + ++ SL + + + + +++D+ I + + ++ + Sbjct: 74 VSEFLLDFLNKYSENISLATYNNYVSICKNYINPSIGKYKIQDLHPVHIQNYIDKLSYK- 132 Query: 115 TKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV-- 172 ++ Q+ H+ ++K ++ A R K +++ + Sbjct: 133 --------------------------LNPQSIKIHINILKLAIKRAYR-LKLIKENVMDS 165 Query: 173 IKIPAVRNKRVRWLEKEEAKRLID-ECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQR 231 I+ P + + ++E+ +L+D ++ + A+ GLR S ++ L W ID + Sbjct: 166 IEAPRYKKFKNEIYDREQMIKLLDLAKNTEMELPINLAIGLGLRISEVLGLTWDNIDFEE 225 Query: 232 RVAWVNPEESKSNRA------------IGVALNDTACKVLRDQIGKHHKWVFVHTKAAKR 279 VN S+ N + ++ +L++ K +K + + Sbjct: 226 NTITVNKITSRINGSVILKEPKTESSVRKISSPKELMSLLKEYKIKQNKNLLKSSIRNNN 285 Query: 280 ADGTSTPAVRKMRIDS-KTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMG 338 + D + + + RFHDLRH+ + LI S VP+ V+ E Sbjct: 286 NLLFFNKKCEPIAEDVMSKKFKRFLEKNELPHIRFHDLRHSHVTLLINSKVPIKVISERV 345 Query: 339 GWESIEMVR-RYAHLAPNHLTEHARKIDDIF 368 G +I Y+H+ E + KI + Sbjct: 346 GHSNISTTLSVYSHVLKEMDKEASDKISESL 376 >UniRef50_A4XMV7 Phage integrase family protein n=2 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XMV7_CALS8 Length = 332 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 69/327 (21%), Positives = 122/327 (37%), Gaps = 50/327 (15%) Query: 55 PDVTFEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRK 114 +TF+E W E A S + R L+ A+ + N+ Sbjct: 34 SSITFKEFVDYWFEAYASTAVKPSTQKRYRQLLKP----------------ALRAIGNKP 77 Query: 115 TKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIK 174 ++ +Q + S T K ++ I + A+ W+++ PV K Sbjct: 78 LNKVKPLDIQNIY-------IALAGTQSNCTILKLHRLLHEIFKHAQM-WEYISDNPVKK 129 Query: 175 I--PAVRNKRVRWLEKEEAKRLIDECP-EPLKSVVKFALATGLRKSNIINLEWQQIDMQR 231 + P K + E AKR ++ EP+ AL TG+R I++L+W ++ + Sbjct: 130 VVPPTPEKKVFDVWDVETAKRFLEIIKDEPIYYPALIALHTGMRAGEILSLKWCDVNFET 189 Query: 232 RVAWVNPEESKSN-----------RAIGVALNDTACKVLRD--QIGKHHKWVFVHTKAAK 278 RV + E K+ V +ND K L++ +I K FV + Sbjct: 190 RVISIVKSERKNRGLKTVNLKTKTSKRAVYMNDILYKELKNLYEITKPKPDDFVCPRL-- 247 Query: 279 RADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMG 338 P + ++ RFHDLRHT+A+ ++ GV ++ E+ Sbjct: 248 -------PTGNLTVNYLSRKFKKLVKKHNFPLIRFHDLRHTFATLMLSLGVNTKIVAEIL 300 Query: 339 GWESIEMV-RRYAHLAPNHLTEHARKI 364 G I++ Y+H+ P E ++ Sbjct: 301 GHSDIKLTADTYSHVLPTMQEEAMKEF 327 >UniRef50_Q1LJF6 Phage integrase n=2 Tax=Betaproteobacteria RepID=Q1LJF6_RALME Length = 366 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 88/386 (22%), Positives = 156/386 (40%), Gaps = 53/386 (13%) Query: 2 SLFRRNEIWYASYSLPGGKRIKESLGTKD--------KRQAQELHDKRKAELWRVEKLGD 53 +++R + + G R+ + T D KR A L + L K + Sbjct: 10 GIYQRGPYSFQVKLMVDGHRVTGTFDTLDEARAYRNSKRAALALDPDARRVLDARVKRHE 69 Query: 54 LPDVTFEEACLRWLEE-KADKKSLDSDKSRIEFWLE-HFEGIRLKDISEAKIYSAVSRMH 111 + T A R+ +E A KKS +S+ +I + L I+ + + + + Sbjct: 70 VKAATLSLALDRYEKEVSAKKKSAESEAHKITRLKRSKLAKMSLYRITADDVTAFLKDL- 128 Query: 112 NRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAP 171 K + + +P+S TK K +A++ + A + W+ P Sbjct: 129 -----------------KRDQPGPLQGQPLSDATKRKLVALLSHVFTIARKRWRMAVANP 171 Query: 172 V--IKIPAVRNKRVRWLEKEEAKRLIDECPEPLKS-----VVKFALATGLRKSNIINLEW 224 V I++P+ R R LE+ E +RL+ E + ++ +V+ A+ T +R+ ++ LEW Sbjct: 172 VADIELPSHGKSRKRRLEEGEEQRLLRELAKARQAAIVVPLVRLAIETAMRQGELLALEW 231 Query: 225 QQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQ-IGKHHKWVFVHTKAAKRADGT 283 + + + ++K+ V LN TAC++L VF AA RA Sbjct: 232 KDLRIADTHGTAMLHDTKNGEPRIVPLNATACEILGAMPRPLKGGPVFPIKTAALRA--- 288 Query: 284 STPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESI 343 W AC RA IE RFHDLRH S L + G+ + G +++ Sbjct: 289 --------------IWEFACERASIEGLRFHDLRHEATSRLFELGLGRIEAASITGHKTL 334 Query: 344 EMVRRYAHLAPNHLTEHARKIDDIFG 369 ++++ Y+HL L + + G Sbjct: 335 QVLKNYSHLRAEWLAQKMNQAASSQG 360 >UniRef50_Q8XZ52 Putative integrase/recombinase protein n=1 Tax=Ralstonia solanacearum RepID=Q8XZ52_RALSO Length = 354 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 82/361 (22%), Positives = 139/361 (38%), Gaps = 21/361 (5%) Query: 13 SYSLPGGKRIKESLGTKDKRQA-QELHDKRKAELWRVEKLGDLPDVTFEEACLRWLEEKA 71 Y+ G R + + A + + +AE W +L + + A + + K Sbjct: 7 KYTKRGEVRFQAKIRRTGVPIASKVFPSREEAEAWIQATEPELQARSRQAARQQ-AQAKL 65 Query: 72 DKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGK 131 K D + + H + ++ +S + I + K Sbjct: 66 IAKFKDRPRIVADLLHRHMQEETVRKKGAEAETHHISSILRYPLARIHLDNL--TRSDIK 123 Query: 132 ELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV---IKIPAVRNKRVRWLEK 188 E + V+ T + L +I A L+ A +W V ++ P+ RVR L Sbjct: 124 EWRDQRLQDVAPSTVNRELNIINAALKVAVHEWDVAICQSVLTSVRRPSNPPGRVRRLSP 183 Query: 189 EEAKRLIDECPE----PLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSN 244 EE L E + ++ AL T +R+ I+ LEW++I R + E+K+ Sbjct: 184 EEEAALRQAGEETRNPYIVPILDLALNTAMRRGEILGLEWERISFAHRSIQLI--ETKNG 241 Query: 245 RAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACR 304 GV L+ A KVL V H + + K ++ Sbjct: 242 TPRGVPLSRHAMKVLATLKQ-----VAAHELGYEGELNSGPVFPGLTANAFKLAFNRMME 296 Query: 305 RAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKI 364 RAG+E+FRFHDLRH S L + G+ + + + G + I M++RY HL + + A K+ Sbjct: 297 RAGLENFRFHDLRHEATSRLFEKGLSVMEVASITGHKDIRMLQRYTHL---QVKDLAAKL 353 Query: 365 D 365 D Sbjct: 354 D 354 >UniRef50_A9VJZ8 Integrase family protein n=15 Tax=Bacillus cereus group RepID=A9VJZ8_BACWK Length = 370 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 62/372 (16%), Positives = 133/372 (35%), Gaps = 49/372 (13%) Query: 18 GGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRWLEEKADKKSLD 77 G ++ K+ G K++A+ K +E+ + + + + E W K + Sbjct: 27 GRRKQKKKRGFITKKEAENALTKLLSEVHTGTYV-EPSKLLYGEYLESWFNTKKYSVGIQ 85 Query: 78 SDK----SRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKEL 133 + K + I+L ++ + + V+ + + K Sbjct: 86 TAKVLKGYLNSRIIPSLGNIKLAKLTSLHMQNYVNSLRDEGLK----------------- 128 Query: 134 PVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKIPAVRNKRVRWLEKEEA 191 T K + +I+ L A D + + K K+P + + + E Sbjct: 129 ---------RGTIEKIIKLIRNSLEHAI-DLELITKNVAAKTKLPKADKEELTVWNEHEV 178 Query: 192 KRLIDECPEPLKSVV-KFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRA---- 246 + + + S+V AL TG+R+ ++ W+ +D+++ ++ S + Sbjct: 179 QFFLKAAQDSRYSIVFHMALVTGMREGELLGFRWKDVDLEKGHLTISQTLSHDGKTFLLG 238 Query: 247 -------IGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKM--RIDSKT 297 + L + L+ K + + D + + Sbjct: 239 GKTKSSLRKILLPASTVAKLKKHRAVVLKEKLSQGEEYQDNDLVMCTPSGTPINPANVRR 298 Query: 298 SWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMV-RRYAHLAPNH 356 S + ++ + RFHDLRHT A+ L+ GV + V+ E G +I++ Y+H+ P Sbjct: 299 SLNALIKKVAVPKIRFHDLRHTHATLLLAKGVNVKVISERLGHSNIKITLDTYSHVLPTM 358 Query: 357 LTEHARKIDDIF 368 + KI++I Sbjct: 359 QEDAVNKIEEIL 370 >UniRef50_C5RZC7 Phage integrase family protein n=1 Tax=Actinobacillus minor NM305 RepID=C5RZC7_9PAST Length = 420 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 70/312 (22%), Positives = 128/312 (41%), Gaps = 48/312 (15%) Query: 69 EKADKKSLDSDKSRIEFWLEHFEGIRL-KDISEAKIYSAVSRMHNRKTKEIWKQKVQAAI 127 K K+S D D+SR ++E + G + D+ +IY S M Sbjct: 143 AKQRKRSWDKDESRFRLYIEPYIGKVIYSDLKALQIYQIQSDM----------------- 185 Query: 128 RKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIP--AVRNKRVRW 185 + P+ S T + +A++K + A R +++ + +K+P N+R R+ Sbjct: 186 ----ISGNHYPRAFSPATCNRTIALLKTMGNFAYR-LEYISENVALKVPLLKENNQRSRY 240 Query: 186 LEKEEAKRLIDECP----EPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEES 241 EE K L+ + S++ L TG R++ + +W+ +D+ ++ +V + Sbjct: 241 FSLEEMKALLYHAEFYPNKYAGSLIALLLLTGARRNELQQAKWEYLDVNAQILYV--PNT 298 Query: 242 KSNRAIGVALNDTACKVL-RDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWL 300 K+ + + L+D A L R + + ++F + K + + Sbjct: 299 KNGKPREIYLSDEAMYWLNRLERDVGNPYIFARKGSVKPISA------------PRFALK 346 Query: 301 SACRRAGIED---FRFHDLRHTWASWLIQSG-VPLSVLQEMGGWESIEMVRRYAHLAPNH 356 ++AGI D FH RH+ A+ LI SG L ++ SI+ +RYA L N Sbjct: 347 QLLKKAGITDIDGICFHTARHSVATLLISSGKFNLYDVKAQLAHASIQSSQRYAKLTENR 406 Query: 357 LTEHARKIDDIF 368 E R I + Sbjct: 407 QRETGRGISSLL 418 >UniRef50_A6GBT9 Phage integrase n=2 Tax=Plesiocystis pacifica SIR-1 RepID=A6GBT9_9DELT Length = 531 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 78/343 (22%), Positives = 136/343 (39%), Gaps = 46/343 (13%) Query: 38 HDKRKAELWRVEKLGDLPDVTFEEACLRWL----EEKADKKSLDSDKSRI-------EFW 86 D+ + + + + DV FE+ R++ A ++ +S + Sbjct: 143 EDRPRRDHAQSDDKRQEEDVIFEDFVPRFMAFCESPVAGRRGANSTGELSNKRGTIEQHL 202 Query: 87 LEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTK 146 +F + L+ I ++ + V K +E KP+S T Sbjct: 203 SPYFGEMPLRRIGARQVDAYVC-------------------AKAQERSKRTGKPLSASTI 243 Query: 147 AKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKRVRWLEKEEAKRLIDECPEPLKSVV 206 A HLA+++ +L+ A R W+ +++ P I+ P + +L K EA+ L++ + + Sbjct: 244 ANHLAVLRRMLKVAHR-WELIDRVPDIQPPR-KGTVDNYLSKREAQALLEHADPLTRDLF 301 Query: 207 KFALATGLRKSNIINLEWQQIDMQRRVAWVNPEES--------KSNRAIGVALNDTACKV 258 AL TG+R + L +D+ V + + K R V + A +V Sbjct: 302 MLALRTGMRLGELRELRTGDVDLANGRIQVRRQRTQEGEVTPPKYGRKRTVQVPADALEV 361 Query: 259 LRDQIGK--HHKWVFVHTKAAK---RADGTSTPAVRKMRIDSKTSWLSACRRAGIED-FR 312 LR ++ + VF K K R + + D + A AGIE Sbjct: 362 LRKRLAGLGRKELVFSKPKGYKAAHRGERAAKGGEPWSHKDLFNAVNRARAGAGIERSVG 421 Query: 313 FHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPN 355 H LRHT+A+ + +GVPLS++ G + RYAH AP Sbjct: 422 VHTLRHTFATHAVAAGVPLSLVSRQLGHSDVRTTMRYAHHAPE 464 >UniRef50_Q3Z840 Site-specific recombinase, phage integrase family n=6 Tax=Bacteria RepID=Q3Z840_DEHE1 Length = 435 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 73/413 (17%), Positives = 156/413 (37%), Gaps = 49/413 (11%) Query: 3 LFRRN-EIWYASYSLP-----GGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDL-- 54 + +R+ + W LP G +R K++A DK+ EL + G Sbjct: 5 IVKRSTDSWSIVIELPRDPATGKRRQSWHTIKGTKKEA----DKKLRELLTAQDNGIFVK 60 Query: 55 -PDVTFEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNR 113 ++F E W + + + + E + ++ G I A ++ + + Sbjct: 61 QSKLSFGEWLENWCRDYVK---IQTTQRTFESYYQNIIG----HIEPALGKVILTELTPQ 113 Query: 114 KTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV- 172 + + ++++ GK +S ++ +I L+ A + + + P Sbjct: 114 IIQAYYARQLEKGRADGK-------GGLSARSVLYQHRIISKCLKQATK-LGLIMRNPAD 165 Query: 173 -IKIPAVRNKRVRWLEKEEAKRLIDECPE-PLKSVVKFALATGLRKSNIINLEWQQIDMQ 230 ++ P R + +K+E RL+D P L G+R+ + L W+ ID++ Sbjct: 166 AVEPPRPRKTAISVPDKDELPRLLDAFETTPYYVFYCLLLYCGMRRGEALALRWKDIDLK 225 Query: 231 RRVAWV---------------NPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTK 275 + + P+ S R I + +L + + + + + Sbjct: 226 QDTIQIAETAFTLRSGEYVIKEPKTPHSRRCIDIPPTMKLL-LLEYKADQTAYYAKLGVE 284 Query: 276 AAKRADGTSTPAVRKMRIDSKTS-WLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVL 334 + P + ++ T +L A R+AG + R HDLRH A+ ++Q+G+ ++ Sbjct: 285 LGLHDFVFTRPNGEPLNPNTVTHTFLKAVRKAGFDKLRLHDLRHLHATLMLQAGIHPKIV 344 Query: 335 QEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIFGDNVPNMSHSEIMEDIKK 386 E G SI + Y+H+ P + D + N ++ + + + + K Sbjct: 345 SERLGHASINITLDTYSHVMPGLQKKAVNVFDKMLSANEESLEENSVSKRLAK 397 >UniRef50_C3RL48 Tyrosine recombinase xerC n=4 Tax=Bacteria RepID=C3RL48_9MOLU Length = 304 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 63/316 (19%), Positives = 129/316 (40%), Gaps = 38/316 (12%) Query: 59 FEEAC--LRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTK 116 F + L++ AD K+++S K +I+ + + + D + Sbjct: 11 FRQYLDYLQYQRHYAD-KTIESYKRQIDHFKQFLIEESIDDYN----------------- 52 Query: 117 EIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAP--VIK 174 V A+ +G +YE K +S T L+ +++ ++ + + P +I+ Sbjct: 53 -----DVSYAMLRGYLTKLYE-KNLSKTTINHKLSALRSFFNYLLKE-ELINDNPFLLIE 105 Query: 175 IPAVRNKRVRWLEKEEAKRLID--ECPEPL----KSVVKFALATGLRKSNIINLEWQQID 228 V + +L EE L+D E + L K++++ A+GLR S ++NL+ ID Sbjct: 106 SQKVAKRNPDFLFPEEILGLLDSIETKDDLGIRNKAMMELMYASGLRCSEVVNLQLSNID 165 Query: 229 MQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAV 288 + V +++ K N+ V +D A + L I + + + + + Sbjct: 166 FNQMVLFIH---GKGNKDRYVPFHDYAGEWLIKYIQEARENLMIKNEGHNFVFVNKFGNP 222 Query: 289 RKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRR 348 R + H +RH++A+ L+ +G + +QE+ G E++ + Sbjct: 223 LTNRGVENIVDRIMRLYDSTKKIHPHTIRHSFATHLLNAGADIRTVQELLGHENLSTTQI 282 Query: 349 YAHLAPNHLTEHARKI 364 Y H++ +HL E K Sbjct: 283 YTHISRDHLKEVYLKA 298 >UniRef50_Q3A6E0 Site-specific recombinase/integrase n=3 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A6E0_PELCD Length = 482 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 76/389 (19%), Positives = 152/389 (39%), Gaps = 70/389 (17%) Query: 7 NEIWYASYSLPGGKRI-----KESLGTKDKRQAQELHDKRKAELWRVEKL-----GDLPD 56 N+ W Y L G K++ S+ A+++ ++ + L E++ Sbjct: 135 NKRWLFRYRLYGRKKVVAIGPYPSIEPP---LAKQMANEMQRNLALGERVVSPRAQQKQQ 191 Query: 57 VTFEEACLRWLEE-KADKKSLDSDKSRI-EFWLEHFEGIRLKDISEAKIYSAVSRMHNRK 114 TF E ++LE K KKS D +++ + + + L ++ +I ++++ R Sbjct: 192 KTFGEFARKYLEHAKQTKKSWKDDYNKLTNQIIPKWGEVPLTCLTPKEIQGYLNQVKART 251 Query: 115 TKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLE--KAPV 172 S +H A++ + A + W ++ K P+ Sbjct: 252 ---------------------------SGTNANRHYAVLNVLYNLAVK-WGEIDPWKNPM 283 Query: 173 IKIPAVRN--KRVRWLEKEEAKRLIDECPE----PLKSVVKFALATGLRKSNIINLEWQQ 226 + R+ R R+L EE KR + E ++ L TG R ++ +W+ Sbjct: 284 PGVSKFRDNPGRTRYLSMEECKRFLAALEEAPGQLAACALRLLLFTGCRAGEVLKSKWED 343 Query: 227 IDMQRRVAWVNPEESKSNRAIGVALNDTACKV---LRDQIGKHHKWVFVHTKAAKRADGT 283 + M+ R + E+K+ ++ V LN + L+D + ++F + K Sbjct: 344 VSMEGRTMLL--PETKNGKSRVVHLNSLSLAEIEKLKDFRNPSNPYLFPGSSEDKPLG-- 399 Query: 284 STPAVRKMRIDSKTSWLSACRRAGIE--DFRFHDLRHTWASWLIQSGVPLSVLQEMGGWE 341 + ++ A + AG++ D H LRHT AS L G L ++ G Sbjct: 400 ----------TVRKTFEHALKLAGLQGTDVVIHTLRHTHASLLANLGESLETIKVSLGHS 449 Query: 342 SIEMVRRYAHLAPNHLTEHARKIDDIFGD 370 S++M RYAH++ + + + + + + Sbjct: 450 SVKMTERYAHISGSKTKDASDHLAEQLKE 478 >UniRef50_B5K290 Phage integrase n=2 Tax=Octadecabacter antarcticus 238 RepID=B5K290_9RHOB Length = 426 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 57/322 (17%), Positives = 128/322 (39%), Gaps = 32/322 (9%) Query: 59 FEEACLRWLEEK----ADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRK 114 F++ R+L E A + D + H+ + DI+ + + ++ + + Sbjct: 110 FKDMIDRYLAEHVPHLAPLNAGDQRAMLTKLVAPHWANKLVADITPHDVATLLNIIAQGR 169 Query: 115 TKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIK 174 + + + ++L +P P+ + +++ + A W W P Sbjct: 170 ARPSK----EKPNNRARKLQGAKPTPIRA---NRVGEVLRKMFTLAIS-WGWRTDNPATG 221 Query: 175 IPA-VRNKRVRWLEKEEAKRL---IDECPEPLKS-VVKFALATGLRKSNIINLEWQQIDM 229 V R R+L +EE RL +D + + +++ + TG R + ++Q ++ Sbjct: 222 FKKRVETARERFLSQEEIGRLAAVLDAAEDQRAAGIIRICMLTGSRVGEVRQARFEQFNL 281 Query: 230 QRRVAWVNPEESKSNRAIGVALNDTACKVLRDQ---IGKHHKWVFVHTKAAKRADGTSTP 286 + + +K + + ++ ++R + + + + W+F + Sbjct: 282 ELCIWSKPAATTKQRKIHRIPISADVAAIVRQRSVSVPRDNPWLFPGDVPGQPVK----- 336 Query: 287 AVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMV 346 + + W++ R A + D R HDLRHT+AS L+ G L ++ + G ++ Sbjct: 337 -------EIRRFWINVQREANLPDVRIHDLRHTFASLLVSGGASLEMIGRLLGHTQMQTT 389 Query: 347 RRYAHLAPNHLTEHARKIDDIF 368 +RYAHL + L + +F Sbjct: 390 QRYAHLMDSPLRAGVDAVAGMF 411 >UniRef50_A3P0T5 Site-specific recombinase, phage integrase family n=17 Tax=Burkholderia RepID=A3P0T5_BURP0 Length = 172 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 62/168 (36%), Positives = 99/168 (58%), Gaps = 7/168 (4%) Query: 197 ECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTAC 256 L++ V+ AL+TG RK+ ++ LEW ++D +R + + E +K+ + V LN A Sbjct: 9 ARQPHLRNFVRLALSTGCRKNELLALEWHRVDFERSLFRLECEHTKNGKRRLVPLNSGAL 68 Query: 257 KVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDL 316 LRDQ WV H ++ +S+ + + + +++AC RAGIE+FR HDL Sbjct: 69 LALRDQR----DWVARHCAGSEWVFASSSG---RRVGNLQKGFVAACARAGIENFRIHDL 121 Query: 317 RHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKI 364 RHT+ASWL+ GV L V++++ G SI + RYAHL+P+H E +K+ Sbjct: 122 RHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREAVQKL 169 >UniRef50_Q129B4 Phage integrase n=1 Tax=Polaromonas sp. JS666 RepID=Q129B4_POLSJ Length = 387 Score = 162 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 73/378 (19%), Positives = 148/378 (39%), Gaps = 56/378 (14%) Query: 8 EIWYASYSLPGGKRIKESLGTKDK---RQAQELHDKRKAELWRVEKLG-----DLPDVTF 59 + + GG + ++GT DK A++ K A+L + TF Sbjct: 44 KTYAVLARKKGGALERVTIGTADKLTPENARDKAKKIIADLATGVSHAASARAKRGETTF 103 Query: 60 EEACLRWLEEKADK-KSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEI 118 E +L K +SL++ + + +E + + RK ++ Sbjct: 104 AELLTDYLSNTTMKPRSLEAYQWLYKKHVE-------------------ADLGKRKLSDV 144 Query: 119 WKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPA- 177 ++++A +K + + T + ++M+KA A ++ + P + Sbjct: 145 SVERIRALHKKISKD--------TPTTANRCVSMVKAAFNWALKEGTYTGANPAGHVKKN 196 Query: 178 VRNKRVRWLEKEEAKRL---IDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVA 234 R R+L+ E ++E EP KS L TG R++N++ + W I ++ + Sbjct: 197 TETSRTRYLQPAELAIFFQALEESEEPAKSFFMLCLLTGARRANVLAMRWADISLEDGIW 256 Query: 235 WVNPEESKSNRAIGVALNDTACKV---LRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKM 291 + ++K+ + + L A + L+ ++ WVF Sbjct: 257 RIPAGDAKAGEEMNIPLVPEAVTLLTRLKIEVADTSPWVFPADSKT------------GH 304 Query: 292 RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAH 351 + K +W + RR+G+ D R HDLR T SWL+++G ++ + G +S++ Y Sbjct: 305 YQEPKRAWATLRRRSGLADLRIHDLRRTMGSWLVRTGANTAINAKALGHKSMQAAAVYQR 364 Query: 352 LAP-NHLTEHARKIDDIF 368 +A + + + K F Sbjct: 365 IADVDPVRDAMEKATTAF 382 >UniRef50_A3K1Y3 Putative uncharacterized protein n=1 Tax=Sagittula stellata E-37 RepID=A3K1Y3_9RHOB Length = 364 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 86/389 (22%), Positives = 150/389 (38%), Gaps = 47/389 (12%) Query: 4 FRRNEI--WYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEE 61 +R W+ + + G+R S GT+D +A+ + + + ++ T E Sbjct: 3 YRPKGSRFWHYDFQIR-GRRFHGSCGTEDFEEAKAVEAAARVKAKHAPQITGR--FTLSE 59 Query: 62 ACLRWLEE-KADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 A + + A + S + S L +G + H K+ Sbjct: 60 AFGTYYSDVCAHQPSARTAMSHFRSVLGVIDG----------------KTHLDALKQSDL 103 Query: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWK--WLEKAPVIKIPAV 178 + ++ R VS T + L + LR E+ E A Sbjct: 104 TRFRSVRRWH----------VSGATINRTLQAMGRALRYMEKHHGAKLAELDFKAVKLAE 153 Query: 179 RNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWV-N 237 +RVR L E RL ++ L +VKFAL TG R+++I NL W+ ID + Sbjct: 154 PKERVRSLTLAEQGRLFEKLRPDLLPLVKFALMTGARQASICNLRWRDIDHDAARMTLQM 213 Query: 238 PEESKSN-RAIGVALNDTACKVL----RDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMR 292 +SK+ + + ++ ++ R + H +VF ++ P R++ Sbjct: 214 KTDSKTEAKTMAFPMSREIKALIGALPRAEHPPHRDYVFTFEVQNRK-----KPERRRII 268 Query: 293 IDSKT--SWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYA 350 +S + +A AGIEDFRFHDLRHT+A+ +++ L ++ + G I RYA Sbjct: 269 QNSTAFEHFAAAVNAAGIEDFRFHDLRHTFATRMLRQTQNLKLVSRLLGHSEITTTSRYA 328 Query: 351 HLAPNHLTEHARKIDDIFGDNVPNMSHSE 379 H+ + L + D S + Sbjct: 329 HVLDDDLASALDGFSALQNDESRRFSRRQ 357 >UniRef50_B9MR26 Integrase family protein n=2 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MR26_ANATD Length = 400 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 71/410 (17%), Positives = 149/410 (36%), Gaps = 56/410 (13%) Query: 2 SLFRRNEIWYASYSLPG----GKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDV 57 S+++R + + G G++ ++ K +++ E K +L + D Sbjct: 14 SIYKRKDGLWCGQITIGRDENGRQKRQYFYGKTRQEVAEKIAKTLNDLANGVYV-DPAKT 72 Query: 58 TFEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKE 117 T ++ WL E + S ++E + I+ A + + + + Sbjct: 73 TLKDWLNTWLWEYKKQTLRPSTFKDYLCYIE-------RHINPAIGHYKLKDLRPEHLQA 125 Query: 118 IWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAP--VIKI 175 ++ K Q +S T + ++ + L A ++ + + + Sbjct: 126 LYNAKYQE--------------GLSISTIKQIHTVLHSALDQALKN-GLVNRNVSEATTL 170 Query: 176 PAVRNKR-VRWLEKEEAKRLIDECP-EPLKSVVKFALATGLRKSNIINLEWQQIDMQRRV 233 P + KR +R L EE +R I E LK+ LA+GLR ++ L W+ ++ + Sbjct: 171 PKGKPKREIRILSLEEQQRFIAALEGERLKTAFLVELASGLRIGELLALRWKDVNFKDGY 230 Query: 234 A-------WVNPEESKSNRA--------------IGVALNDTACKVLRDQIGKHHKWVFV 272 V + +++ V L + L+ K + Sbjct: 231 IEVRRSLQRVRIFDGGNSKKTALAFQEPKTEAGKRIVPLPPVIIEELKQHRKKQLEEKLK 290 Query: 273 HTKAAKRADGTSTPAVRKM--RIDSKTSWLSACRRAGI-EDFRFHDLRHTWASWLIQSGV 329 + D + + + + +AG+ + FH LRHT+A+ L+++ Sbjct: 291 AGALYEDNDLVFATELGTPIDPRNFERLFYRIREKAGLDKSVNFHALRHTYATRLLEANE 350 Query: 330 PLSVLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIFGDNVPNMSHS 378 V+QE+ G + I Y+H+ P A K++ +F + +HS Sbjct: 351 HPKVVQELLGHKDISTTLNIYSHVMPEIKKAAAMKLNSLFENIKTKGNHS 400 >UniRef50_Q3ABG2 Prophage LambdaCh01, site-specific recombinase, phage integrase family n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ABG2_CARHZ Length = 371 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 68/393 (17%), Positives = 146/393 (37%), Gaps = 56/393 (14%) Query: 3 LFRRNEIW----YASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 + +R + Y G K+ K G K K++A+++ + ++ + +T Sbjct: 5 IRKRGNYYSVVLYLGKDENGKKKYKWIGGFKTKKEAEKVLAEMINKVETNNFIFP-EKIT 63 Query: 59 FEEACLRWLEEKADKKSLDSDKSRIE-----FWLEHFEGIRLKDISEAKIYSAVSRMHNR 113 +E WLE + E + F+ I L+ + I + + Sbjct: 64 LKEFLNYWLENYVRPNLSPTTAYGYEAIINLHIIPFFKNIELQKVRPIDIQQYYNSKRDE 123 Query: 114 KTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV- 172 +S +T +H ++ A + + + P+ Sbjct: 124 ---------------------------LSGKTLLQHHRILHKAFDFAMK-LQLIPNNPID 155 Query: 173 -IKIPAVRNKRVRWLEKEEAKRLIDECPE-PLKSVVKFALATGLRKSNIINLEWQQIDMQ 230 + P + + + L+ +E K L++ + L+ + AL+ GLR+ ++ L+W+ ++ + Sbjct: 156 FVDSPKAKKYKAKILDLKEIKTLLNALKDTDLEVPINLALSLGLRRGELLALKWEDVNWE 215 Query: 231 RRVAWVN-----------PEESKSNRA-IGVALNDTACKVLRDQIGKHHKWVFVHTKAAK 278 + +E KS + + L+ T +L++ K + + K Sbjct: 216 EGTIQIRRNLVRAGTKLILKEPKSETSIRTLKLSKTLLTMLKNHRKKQIELKLMLGNEYK 275 Query: 279 RADGTSTPAVRKM--RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQE 336 +M + ++ G+ D R HDLRHT A+ +++S +P + Sbjct: 276 DTGFICCKNNGEMINPSTFSHQFSDFLKKHGLPDIRLHDLRHTNATLMLKSNIPAKIASS 335 Query: 337 MGGWESIEMV-RRYAHLAPNHLTEHARKIDDIF 368 G ++ + Y+H+ + E A KIDDI Sbjct: 336 RLGHSTVAITLDLYSHVLTDMDEEVANKIDDII 368 >UniRef50_A6Q5N8 Site-specific recombinase, phage integrase family n=1 Tax=Nitratiruptor sp. SB155-2 RepID=A6Q5N8_NITSB Length = 365 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 76/370 (20%), Positives = 144/370 (38%), Gaps = 43/370 (11%) Query: 9 IWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLP--------DVTFE 60 + +Y GK+ ++G K + ++ E KLG+ P + Sbjct: 23 SYSFTYKDENGKKKWVTVGKKSAGITEVYTYNKRNEYINKVKLGEDPLRAKKLRKSKVLD 82 Query: 61 EACLRWLEEKA-DKKSLDSDKSR-IEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEI 118 EA +++++ KSL +K+R I F + I+ A+ ++ +K E Sbjct: 83 EAFELYVKDRELHNKSLHDEKARYINHIQPTFGSTPIAAITPE----AIQKLQKKKINEG 138 Query: 119 WKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIP-- 176 + S +T + ++ I+ + P K+ Sbjct: 139 Y----------------------SYKTVNHIINLLSTIINVGIEKGLYQGSNPAKKVKRL 176 Query: 177 AVRNKRVRWLEKEEAKRLIDECPEP--LKSVVKFALATGLRKSNIINLEWQQIDMQRRVA 234 V N R R+L +E K L+D + L +L+TG R I+ ++ + ID++ Sbjct: 177 KVDNARERFLSVDEVKLLLDTVKDNPTLYLFCNLSLSTGGRLETILAIQKKDIDLESGT- 235 Query: 235 WVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRID 294 + ++ K++ +NDT +L+D + + ++ +K++K K +D Sbjct: 236 -IKLKDFKNDSTYTGFINDTLHSLLKDLLPQLKANDYILSKSSKPLTSRQIQVPLKPILD 294 Query: 295 SKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAP 354 + H LRHT+AS L +G P+ +Q + + I M RYA LAP Sbjct: 295 -RLFNQGLQPNDRKNRVVIHTLRHTFASHLAINGTPIYTIQRLMNHKDINMTLRYAKLAP 353 Query: 355 NHLTEHARKI 364 + E R + Sbjct: 354 DSGREAVRSL 363 >UniRef50_C1CZ59 Putative Tyrosine recombinase xerC-like protein n=1 Tax=Deinococcus deserti VCD115 RepID=C1CZ59_DEIDV Length = 379 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 75/379 (19%), Positives = 136/379 (35%), Gaps = 55/379 (14%) Query: 17 PGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRWLEEKADKKSL 76 P GK+ + K + +A+E +E R +T RWL K Sbjct: 30 PDGKQQRRYFSAKTQAEAREKLQALVSE--RNGGCLSSETLTLAAYLDRWLTHKQRDVKF 87 Query: 77 DSDKSR----IEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKE 132 ++ +S ++L ++ I VS + Sbjct: 88 NTHRSYEMTARVHIKPRLGKVQLDKLTPLHIEELVSAL---------------------- 125 Query: 133 LPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKIPAVRNKRVRWLEKEE 190 L + V+ +++ L A R W+ + + + P K ++ +E Sbjct: 126 LAEGQSAKVALGCVK----LLRTALTQAVR-WQLVGRNVAQSVTPPKHTPKEMQVWTPDE 180 Query: 191 AKRLIDECPEP-LKSVVKFALATGLRKSNIINLEWQQID-----------MQRRVAWVNP 238 A R + E L ++ ALATG+R+ ++ L+W+ I+ + RV+ V Sbjct: 181 ASRFLAVAREHRLYALFYLALATGMRRGELLGLKWESINMLAGTLVVQHNLIDRVSSVTL 240 Query: 239 EESKSN-RAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADG----TSTPAVRKMRI 293 E K+ +AL+ + LR +H +W+ K + S Sbjct: 241 ETPKTRASRRTIALSPDTVEALRAH--RHSQWLEQCKAGEKWQEHGMVFPSDVGTLMFPA 298 Query: 294 DSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRR-YAHL 352 + ++ C +A + R HDLRHT AS LI++ VP V+ + G R YAH+ Sbjct: 299 NLMGAFRRLCAKARVPAIRLHDLRHTSASLLIRANVPPKVVADRLGHTDPGFTLRVYAHV 358 Query: 353 APNHLTEHARKIDDIFGDN 371 A + ++ + Sbjct: 359 YEEQRRAAALPLGEMLREA 377 >UniRef50_C9RA80 Integrase family protein n=1 Tax=Ammonifex degensii KC4 RepID=C9RA80_AMMDK Length = 383 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 83/395 (21%), Positives = 150/395 (37%), Gaps = 54/395 (13%) Query: 5 RRNEIWYASYSL----PGGKRIKESL-GTKDKRQAQELHDKRKAELWRVEKLGDLPDVTF 59 +R + + + GKR ++ L G + K++A+ + AE+ R + D VT Sbjct: 11 KRGVYYDVVFDIGRDPVTGKRKQKWLRGFRTKKEAEAALAQAIAEVERGTYI-DPEKVTL 69 Query: 60 EEACLRWLEEKADK---KSLDSDKSRIEFWL-EHFEGIRLKDISEAKIYSAVSRMHNRKT 115 E W + K ++ + IE WL H GI L+ +S + +S M Sbjct: 70 AEYLKEWHAARKHKLSLRTWERYGQLIEHWLIPHLGGIPLRKLSPVHLEKFISAM----- 124 Query: 116 KEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKI 175 ++A GK +S T ++ LR A + + + P+ + Sbjct: 125 -------LEADRLDGK-------GKISPTTVRHAALVLNKALRDAVKK-RLIPYNPMEAV 169 Query: 176 PAVRNKRVRW--LEKEEAKRLIDECP-EPLKSVVKFALATGLRKSNIINLEWQQIDMQRR 232 R R L++ E +RL+ L + + A+ TG R I+ L W+ +D + Sbjct: 170 DKPRKARKEPPALKEGELRRLMSAAEGTYLYAPITLAVYTGARLGEILGLRWRDVDFEAG 229 Query: 233 VAWV---------------NPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAA 277 ++ P+ +S R I + LR Q +W A Sbjct: 230 CIFILQALKRNLKGELYFDEPKTPRSRRRIEI--GPACLAALRKQKKLQAEWKLKAGSAW 287 Query: 278 KRADGTSTPAVRKM--RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQ 335 + T +++ + GI D FH LRHT A+ L+++GV L ++ Sbjct: 288 QETGLVCTREDGSPIDPHAFSSAFRKLASKLGI-DANFHALRHTHATMLLKAGVHLKIVS 346 Query: 336 EMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIFG 369 E G S+ + Y+H+ P A+ +++ Sbjct: 347 ERLGHASVAITGDLYSHVLPGMQGGAAQLVEEELN 381 >UniRef50_C4XKJ5 Site-specific recombinase n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XKJ5_DESMR Length = 410 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 82/414 (19%), Positives = 150/414 (36%), Gaps = 87/414 (21%) Query: 7 NEIWYASYSLPGGKRIKESLGTKDK----RQAQELHDKRK---------AELWRVEKLGD 53 + ++A Y GKR +ESLG + +A ++ K K L KL + Sbjct: 29 KDKYFAIYYKVDGKRREESLGWASQGMSAAKASQVLAKLKEAARTGEGATSLAEKRKLAE 88 Query: 54 LP--------------DVTFEEACLR-WL-EEKADKK--SLDSDKSRIEFWL-EHFEGIR 94 ++TF + C +L + KK S+ + ++ WL + Sbjct: 89 AKREEERQQEEARARENITFADYCANDYLPLARVTKKPESIRKTEEHVKNWLGPVVGRLP 148 Query: 95 LKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIK 154 LK+I + + + M N S ++ A + Sbjct: 149 LKNIRQMHMQKVLLAMAN--------------------------AGRSPRSIQYVFATFR 182 Query: 155 AILRAAERDWKWLEKAPV--IKIPAVRNKRVRWLEKEEAKRLIDEC---PEPLKSVVKFA 209 AI A + ++P + +P V N+R R+L + EA L+ E + + Sbjct: 183 AIWNHARNNGFVQVQSPTKGVALPKVNNERKRYLSRPEADALLAELATRSPQTHDLALLS 242 Query: 210 LATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQ-IGKHHK 268 L TG+R S + L W +D+ + + +K + + + ++ G ++ Sbjct: 243 LDTGMRFSEVTGLTWGCVDLDKGRIDIL--NAKGEKDRAIPMTARVKELFESMTPGASNE 300 Query: 269 WVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIED--------FRFHDLRHTW 320 +F + S+ A + G+ F FH LRHT Sbjct: 301 LIFKSRVGGQIG-------------KISKSFDLAVEKLGLNKDVDDPKQIFSFHCLRHTC 347 Query: 321 ASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIFGDNVPN 374 ASWLI++G L V+Q+ G + + +RY+H+A + R ++ P Sbjct: 348 ASWLIEAGTDLYVVQKTLGHSTPVVTQRYSHVADASIANAFRAMEADTAKAQPG 401 >UniRef50_B1RM53 Phage integrase n=4 Tax=Clostridium RepID=B1RM53_CLOPE Length = 400 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 61/342 (17%), Positives = 124/342 (36%), Gaps = 45/342 (13%) Query: 66 WLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSA---------VSRMHNRKTK 116 +++ D + +++ R+ D+ + S + K Sbjct: 62 YVDNNRGLLPTDDKITLSKWFYTWLFTYRIHDLKPSSFERYEGLYRNYIESSSIGKIKLM 121 Query: 117 EIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKA--PVIK 174 ++ +QA P + +T K +K+ L A ++ ++ K +I Sbjct: 122 DLRTHHIQAYYNSLVSEERKSPSTI--KTINK---CLKSCLNQALKE-GYITKNYCTLIT 175 Query: 175 IPAV---RNKRVRWLEKEEAKRLIDEC-PEPLKSVVKFALATGLRKSNIINLEWQQIDMQ 230 +P + + EE + + EC + AL TGLR I+ L+W I+ + Sbjct: 176 LPKGSESPKEIINIFTLEEQQTFMKECMNNKNGMLYILALGTGLRLGEILALKWTDINFK 235 Query: 231 RRVAWVNPE-------ESKSNRA--------------IGVALNDTACKVLRDQIGKHHKW 269 +N +SK NR V LND ++L+ K Sbjct: 236 NNYIDINKAIKSTYKIDSKGNREFQIIEQQPKTKNSIRTVPLNDNLIELLQQHRKKQMID 295 Query: 270 VFVHTKAAKRADGTSTPAVRKM--RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQS 327 + + + + + + + ++ + +++ RFHDLRHT+A+ L ++ Sbjct: 296 RDSNIEIYFDNNLVFSTPIGNYLNESNVRKTFKRILNKCNLKELRFHDLRHTFATRLFEN 355 Query: 328 GVPLSVLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIF 368 GVP +Q + G I Y H+ + + K++ +F Sbjct: 356 GVPPKTVQTILGHSDISTTLNIYTHVMKDTKDKAIDKLNFLF 397 >UniRef50_A6G3E1 Phage integrase n=2 Tax=Plesiocystis pacifica SIR-1 RepID=A6G3E1_9DELT Length = 398 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 90/396 (22%), Positives = 151/396 (38%), Gaps = 64/396 (16%) Query: 1 MSLFRRN---------EIW--YASYSLPGGKR--IKESLGTKDKRQAQELHDKRKAELWR 47 MS+ +R E W + ++ P G++ I++ + KR A+ + + +L+ Sbjct: 1 MSVRKRKWRDKQGRQHERWMVHIEHTWPDGRKLTIRKVSPVQTKRGAERYERELRKQLFT 60 Query: 48 VEKLGDLPDVT-----FEEACLRWLEEKADKKSLDSDKSRIE-FWLEHFEGIRLKDISEA 101 + T F E L + + + + L F RL I E Sbjct: 61 GQWEEGDKQQTPTLQGFVEEFLAYQRTINKPAVIRRKEGILRLHLLPAFGRHRLDKIDER 120 Query: 102 KIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAE 161 I + +K A + + P QT +HL ++ I A+ Sbjct: 121 MI-------------DQYKVDRLATLTR-------TGSPFQPQTVNQHLKVLGRIFTVAK 160 Query: 162 RDWKWLEKAPVIKIPAVRNKRVRWLEKEEAKRLIDECPEPL---KSVVKFALATGLRKSN 218 + WK + + P I + R +L+ +E + + E L + + A+ TGLR Sbjct: 161 K-WKLVREVPEIVLLKQRKSDFDFLDFDETEAFLTGTAEHLPDWHTYMVVAVRTGLRVGE 219 Query: 219 IINLEW-QQIDMQRRVAWVNP--------EESKSNRAIGVALNDTACKVLRDQIGK-HHK 268 +I L W + ID+QR VN +KS++ + L A L Q + K Sbjct: 220 MIALRWREDIDLQRGRISVNQSWSVENGFTSTKSDKRRELPLTWDARDALEAQRVRVQGK 279 Query: 269 WVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSG 328 VF A + GT A+ K + H LRHT+AS + G Sbjct: 280 LVFPREGAPTHSAGTVQYAIDK-----------ITEALEMRHLHNHVLRHTFASHAVMRG 328 Query: 329 VPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKI 364 VP+ +QE G +SI RYAHL+ + E +++ Sbjct: 329 VPMRQVQEWLGHQSITTTMRYAHLSRGYGDELIKRL 364 >UniRef50_A0LL76 Phage integrase family protein n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LL76_SYNFM Length = 381 Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 79/377 (20%), Positives = 135/377 (35%), Gaps = 58/377 (15%) Query: 9 IWYASYSLPGGKRIKESLGTKDK-----RQAQELHDKRKA------ELWRVEKLGDLPDV 57 I+Y Y GGK I+E G + + +A + KR E R + Sbjct: 29 IYYIRYR-RGGKLIEEKAGRQFRDDMSAARAAGIRAKRMEGDQPTNEERREAEREVKERW 87 Query: 58 TFEEACLRWLEEKADKKSLDSDKSRI-EFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTK 116 T + K + +D++R + F ++ + +M Sbjct: 88 TITRLWEEYKRGTPGLKGIVTDENRFSKHIKPIFGDKEPGELVPLDVDRLRVKML----- 142 Query: 117 EIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIP 176 K T L +++ I+ R + I +P Sbjct: 143 ----------------------KTHKPATVRNALELLRRIVNFGVRKQLCPCLSFQIPMP 180 Query: 177 AVRNKRVRWLEKEEAKRLIDECPEP----LKSVVKFALATGLRKSNIINLEWQQIDMQRR 232 VRN++ L +E RL+ E + +VK AL TG+R+ I+ L W ID+ R Sbjct: 181 RVRNEKTEDLTPDELARLLKALSEEPNTQVAHIVKLALFTGMRRGEILKLRWTDIDLDRG 240 Query: 233 VAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMR 292 +++ + K + L+++A ++L + +VF A+R D + K Sbjct: 241 --FISIRDPKGGVDQRIPLSESARRILANHPKTDSLFVFPGRNGAQRTDINKSLNRIKEA 298 Query: 293 IDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSG-VPLSVLQEMGGWESIEMVRRYAH 351 + + H LRH +AS L SG V + LQ++ +S M RYAH Sbjct: 299 AELPKDFRML-----------HGLRHAFASSLASSGEVDMYTLQKLLTHKSPTMTARYAH 347 Query: 352 LAPNHLTEHARKIDDIF 368 L L + +I Sbjct: 348 LRDESLRRASDLAGEII 364 >UniRef50_D1YMA1 Site-specific recombinase, phage integrase family n=1 Tax=Veillonella parvula ATCC 17745 RepID=D1YMA1_9FIRM Length = 350 Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 65/394 (16%), Positives = 141/394 (35%), Gaps = 75/394 (19%) Query: 2 SLFRRNEIWYASYSLPGG--KRIKESLGTKDKRQAQELHDKRKAELWRVEKL---GDLPD 56 ++ ++++ + S G + K G +R+A+ K EL + L + Sbjct: 6 TIRKKDKGYQIIVSYKDGIKWKQKSKQGFSTQREAKLYGQKIIDELRKTVTNPLDDSLKN 65 Query: 57 VTFEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGI---RLKDISEAKIYSAVSRMHNR 113 +TF E C ++ EK ++ K ++ +++ + R++DIS I+ +S + Sbjct: 66 ITFIELCELYMREKIGIS--ENTKLVYQYIIKNLSVLHQKRVRDISHQMIFKTLSDIE-- 121 Query: 114 KTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVI 173 + +TK H+ +K++ A + ++ + PV Sbjct: 122 ---------------------------FANRTKNMHITFLKSVFNFAIKPYRIIRSNPVA 154 Query: 174 KIPAVRNKRVRWLEK---EEAKRLIDEC--PEPLKSVVKFALATGLRKSNIINLEWQQID 228 I K + L +E L+ + L +++ A TG R I+ L W ID Sbjct: 155 DIKRFTTKTYKSLTTFTIDEMDLLLKTYIDNKKLYTLLCIARYTGARYGEILALTWLDID 214 Query: 229 MQRRVAWVNPEESKS-------------NRAIGVALNDTACKVLRDQIGKHHKWVFVHTK 275 + +N + S++ N + + +L + + + Sbjct: 215 LAYNTIRINKQWSRTSNNTFGVKEPKTRNSIRTLPIPPILSNILLEYKSISNTERLFNIN 274 Query: 276 AAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQ 335 + + ++ R + + H RHT+A+ L+ +GV + + Sbjct: 275 TSSTGN------------------VNYAIRTIVPNKTIHAFRHTYATTLLANGVDIKTVA 316 Query: 336 EMGGWESIEMVRRYAHLAPNHLTEHARKIDDIFG 369 + G ++ Y H + A+ + IFG Sbjct: 317 SLLGDNINTVMNVYVHYSDEMRKNAAQDVSKIFG 350 >UniRef50_A1VGL4 Phage integrase family protein n=1 Tax=Desulfovibrio vulgaris DP4 RepID=A1VGL4_DESVV Length = 417 Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 75/383 (19%), Positives = 146/383 (38%), Gaps = 59/383 (15%) Query: 2 SLFRRNEIWYASYSLPGGKRIKESLGTKDKRQ---AQELHDKRKAELWRVEKLGDLPDVT 58 +L++R+ G++ + L T K AQ + +R + D T Sbjct: 65 ALYKRDG---RLIETKIGRQFSDDL-TPAKAALIRAQLIEGRRSTRKELRQAEMDNAPWT 120 Query: 59 FEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEI 118 + K + K + +D++R E L H + ++ ++I+ + + + N K Sbjct: 121 ILTLWEEYKRRKPNLKGIITDQNRFEVHLRHLQNMKPEEITTTLVDNLQLSLANSGKK-- 178 Query: 119 WKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKIP 176 T + +++ I+ E+ ++P Sbjct: 179 ------------------------PGTIKNVIELLRRIISFGEKKGLITPSQICAHFEMP 214 Query: 177 AVRNKRVRWLEKEEAKRLIDECP----EPLKSVVKFALATGLRKSNIINLEWQQIDMQRR 232 + N++ L E+ LI + ++ AL TG+R+ I NL+W+ ID R Sbjct: 215 ILNNQKTEDLTPEQLNNLIAAIESTKHKKAGQMMLLALYTGMRRGEIFNLKWEHIDWHRG 274 Query: 233 VAWVNPEE----SKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAV 288 + + +KS + + LND A ++L ++VF + Sbjct: 275 FINIVGRDDGLGAKSGQCERIPLNDLARQLLLSVPKGQSRYVFPGKSGGRL--------- 325 Query: 289 RKMRIDSKTSWLSACRRAGIED--FRFHDLRHTWASWLIQSG-VPLSVLQEMGGWESIEM 345 +D + + + AG+ D FH LRH +AS L +G V + LQ++ +S M Sbjct: 326 ----VDIRKQADALKKEAGLPDSFRPFHGLRHVYASLLASTGKVSMYELQKLMTHKSAAM 381 Query: 346 VRRYAHLAPNHLTEHARKIDDIF 368 +RYAHL + L + ++ + Sbjct: 382 TQRYAHLRDDALKKASQTASEAI 404 >UniRef50_P06723 Integrase n=52 Tax=root RepID=VINT_BP186 Length = 336 Score = 161 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 89/381 (23%), Positives = 150/381 (39%), Gaps = 75/381 (19%) Query: 1 MSLFRRNEIWYASYSLPGG---KRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDV 57 M++ + + P G KRI++ TK + A Sbjct: 1 MTVRKNPAGGWICELYPNGAKGKRIRKKFATKGEALA----------------------- 37 Query: 58 TFEEACLR--WLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKI--YSAVSRMHNR 113 FE+ ++ W EEK D+++L K ++ W GI LKD + ++ + A M Sbjct: 38 -FEQYTVQNPWQEEKEDRRTL---KELVDSWYSAH-GITLKDGLKRQLAMHHAFECMGEP 92 Query: 114 KTKEIWKQ---KVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKA 170 ++ Q + + KG+ K VS +T LA +A+ R +W + Sbjct: 93 LARDFDAQMFSRYREKRLKGEYARSNRVKEVSPRTLNLELAYFRAVFNELNRLGEWKGEN 152 Query: 171 PVIKIPAVRNKRVR--WLEKEEAKRLIDECPEP----LKSVVKFALATGLRKSNIINLEW 224 P+ + R + + WL ++ +L+ EC L++VV+ LATG R S +L Sbjct: 153 PLKNMRPFRTEEMEMTWLTHDQISQLLGECNRHDHPDLETVVRICLATGARWSEAESLRK 212 Query: 225 QQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTS 284 Q+ + +K + V ++ + L D Sbjct: 213 SQL----AKYKITYTNTKGRKNRTVPISKELYESLPDDKK-------------------- 248 Query: 285 TPAVRKMRIDSKTSWLSACRRAGIE---DFRFHDLRHTWASWLIQSGVPLSVLQEMGGWE 341 ++ D ++ SA R GIE H LRHT+AS + +G + VLQ + G Sbjct: 249 ----GRLFSDCYGAFRSALERTGIELPAGQLTHVLRHTFASHFMMNGGNILVLQRVLGHT 304 Query: 342 SIEMVRRYAHLAPNHLTEHAR 362 I+M RYAH AP+HL + + Sbjct: 305 DIKMTMRYAHFAPDHLEDAVK 325 >UniRef50_B1KTY6 Site-specific recombinase, phage integrase family n=6 Tax=Clostridium RepID=B1KTY6_CLOBM Length = 357 Score = 161 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 75/380 (19%), Positives = 139/380 (36%), Gaps = 63/380 (16%) Query: 12 ASYSLPGGKRIKESLGTKDKRQAQELHDKRKAEL---WRVEKLGDLPDVTFEEACLRWLE 68 SY + G + K G K K A+ DK +L D ++TF++ + +LE Sbjct: 18 ISYKVNGKWKQKSKQGFKKKNDAKRAADKLLDDLKCNIENSLNTDYGNITFKDFTIMFLE 77 Query: 69 EKADKKSLDSDKSRIEFWLEHFE---GIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQA 125 + K + +S F L F+ + L I+ +I + V M Sbjct: 78 HEILYKEPGTIRSY-RFALNRFKELNDLELTKINTMQIQTCVDNM--------------- 121 Query: 126 AIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIP---AVRNKR 182 +++ T +++ + I A + + + K PV I + + ++ Sbjct: 122 -----------IKTGLASSTTKLYVSKLNTIFSNAIKPYNLIAKNPVDGIKILKSKKQEK 170 Query: 183 VRWLEKEEAKRLIDECPEPLKSVVKFALAT-GLRKSNIINLEWQQIDMQRRVAWVNPEES 241 ++ L+K + K L+ + + AT GLR ++ L W ID VN + Sbjct: 171 IKALDKAKLKDLLGKITYKKYYIASLIAATCGLRIGEVLGLTWADIDEINSTLTVNKQWK 230 Query: 242 K-------------SNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAV 288 K N V ++ K L++ FV + + + Sbjct: 231 KLKSGNWGFGSVKSKNSNRVVPISPNTLKELKNFKKN-----FVTDIHNRIIVCADSINL 285 Query: 289 RKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRR 348 + L C + + HDLRHT+A+ LI +GV ++ G ++ Sbjct: 286 SRG--------LRDCYKRNGYNISIHDLRHTYATMLIGNGVDFKTAAKLLGHTIEMTMKT 337 Query: 349 YAHLAPNHLTEHARKIDDIF 368 YAH+ + + + I+ IF Sbjct: 338 YAHVNDDMINKATNLIEKIF 357 >UniRef50_C9CXZ5 Phage integrase n=1 Tax=Silicibacter sp. TrichCH4B RepID=C9CXZ5_9RHOB Length = 391 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 82/356 (23%), Positives = 144/356 (40%), Gaps = 41/356 (11%) Query: 40 KRKAELWRVEKLGDLPDVTFEEACL-------RWLEEKADKKSLDSDKSRIEFWLEHFEG 92 + + + G++P T L R + ++DK S ++ W FE Sbjct: 53 RAQTRWMTIGNYGEIPLETARNIALECAAMVARGQDPQSDKIKKREAPSLVDLW-GRFEE 111 Query: 93 IRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAM 152 +K + A I S N + K++V A I + ++ + + +A+ Sbjct: 112 SDMKRLKPATIRDYRSLWKNILEPALGKRRV-ADISRADVDRLHRSMSDTPYQANRSIAV 170 Query: 153 IKAILRAAERDWKWLEK--APVIKIPAVRN-KRVRWLEKEEAKRLIDECP---------E 200 + ++ AE W+W ++ P + R KR R+L EE +RL Sbjct: 171 LSKMMTLAEI-WEWRDQGTNPCRYVTRHREGKRERYLSTEELERLGAALTNLVDLGLLWP 229 Query: 201 PLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLR 260 + ++ + L G R+S I N EW ID +RR+ + ++ + + L++ A VL+ Sbjct: 230 DMANLFRLLLLVGARRSEISNCEWNWIDWERRIIALPDSKTGAK---PLFLSNEAITVLQ 286 Query: 261 DQ----IGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDL 316 +Q + K+VF KA K ++ W C A +E+ R HDL Sbjct: 287 NQKITTRHQSSKFVFPGAKANKAI------------VNLSKPWKLICEEAELENLRIHDL 334 Query: 317 RHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIFGDNV 372 RHT AS + GV L ++ + G + RYAH+ + + A I G + Sbjct: 335 RHTAASIAVGQGVALPIIGRLLGHTQTQTTARYAHVDADPALKAANAIGQAIGAAI 390 >UniRef50_A0AGT2 Complete genome n=7 Tax=Bacilli RepID=A0AGT2_LISW6 Length = 386 Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats. Identities = 79/398 (19%), Positives = 159/398 (39%), Gaps = 56/398 (14%) Query: 5 RRNEIWYAS---YSLPGGKRIKESL-GTKDKRQAQELHDKRKAE----LWRVEKLGDLPD 56 ++ + W+ + GK+I+++ G +R A+ +D+ L Sbjct: 11 KKTKKWFFRAYLGTDMDGKKIQKTKRGYGSQRDAKRGYDQYMLTHGFHQTLSSHLSSASQ 70 Query: 57 VTFEEA----CLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHN 112 +TFEE + W E++ ++ ++ + E +E+F +R++DIS I + + Sbjct: 71 MTFEEFYRIRFVNWYEKQVKSQTFENAQFIFEKKMEYFYRMRIRDISSQDIEDWMHELSQ 130 Query: 113 RKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV 172 T+ KQ+ E +S + L ++ IL A ++ +E+ PV Sbjct: 131 TATRNSRKQE--------------EITTLSRTYINRILGHLRIILNRAVKE-GLIERNPV 175 Query: 173 IKIP--AVRNKRVRWLEKEEAKRLIDECPE------PLKSVVKFALATGLRKSNIINLEW 224 + N +V + E EE ++++ PE K + + TGLR + L W Sbjct: 176 DSVSYFPKENNKVEFWEIEEFQKVMAMIPENSIQNQHRKIIYEMLFYTGLRIGELQALSW 235 Query: 225 QQIDMQRRVAWVNPE------------ESKSNRA-IGVALNDTACKVLRDQIGKHHKWVF 271 + ++ ++ V K+N++ +++ T K L+ + Sbjct: 236 ENVNFEKNQITVEKTLIYQGKNDWYFSTPKTNKSYRTISIGKTLSKRLKKWQELQR--MI 293 Query: 272 VHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPL 331 + + + DGT TP+ + R+AG+ + H LRH+ + LI + Sbjct: 294 GNFEYMSQLDGTFTPSY-----SFSNWLKDSARKAGVIPIKLHALRHSHVALLIDQNIQP 348 Query: 332 SVLQEMGGWESIEMVR-RYAHLAPNHLTEHARKIDDIF 368 V+QE G +I++ Y HL ++ +D I Sbjct: 349 LVIQERLGHANIQITLGTYGHLYAKSDSQVVDVLDKII 386 >UniRef50_B0TI08 Phage integrase family protein n=14 Tax=root RepID=B0TI08_HELMI Length = 368 Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 71/396 (17%), Positives = 142/396 (35%), Gaps = 74/396 (18%) Query: 1 MSLFR--RNEIWYASYSLP---GGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLP 55 M +++ + + WY ++ G R + G K A + E ++K Sbjct: 1 MPVYKDEKRKTWYCAFRYKDWTGTTRQHKKRGFAKKSDAVQY------ERDFIKKQSGGC 54 Query: 56 DVTFEEACLRWLEEKADK---KSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMH 111 D+ F ++E+ + + + K I+ L F+ + + I+ A + + + Sbjct: 55 DMAFGSMVELYMEDCKTRLRPTTYEGKKYLIDSKILPVFKDMPVNAITPATVRKWQNGLL 114 Query: 112 NRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAP 171 + ++ P +T + AI A R + L+ P Sbjct: 115 DDESDY---------------------SPTYLKTINNQ---LSAIFNYARRYYG-LQTNP 149 Query: 172 VI---KIPAVRNKRVRWLEKEEAKRLIDECPEP--LKSVVKFALATGLRKSNIINLEWQQ 226 I + +++ +E + + ++ TG+R ++ L Sbjct: 150 AAVCGSIGKKNAESMQFWTTDEFRLFAAAISDKPASYAIFNTLFWTGMRSGELLALTLND 209 Query: 227 IDMQRRVAWVN--------------PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFV 272 ID + + + P+ KS R I ++ ++L+D G+ + Sbjct: 210 IDFESKKISITKSYARVGNEDVISPPKTPKSRRVITA--SEFLLEILKDYAGRLVDY--- 264 Query: 273 HTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLS 332 S + + C+ +G++ R HD+RH+ AS LI+ G Sbjct: 265 ---------EPSDRLFDYTKHFLASEMARGCKLSGVKKIRIHDIRHSHASLLIELGFSPL 315 Query: 333 VLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDI 367 ++ E G ES+E + YAHL PN E A K+D + Sbjct: 316 LISERLGHESVETTLQTYAHLYPNKHGEVADKLDAL 351 >UniRef50_B2V4P6 Phage integrase family protein n=9 Tax=root RepID=B2V4P6_CLOBA Length = 382 Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 62/396 (15%), Positives = 134/396 (33%), Gaps = 47/396 (11%) Query: 2 SLFRRNEIWYASYSL--PGGKRIK-ESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 + ++ WY + GKR + E G K++AQ+ E + +++ Sbjct: 4 GVRKKGNRWYYYFEAGRVNGKRKRIERKGGDTKKEAQQALRMALNEFNNTGSYVNETNMS 63 Query: 59 FEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEI 118 F + W +E K + + + ++ + + K K++ Sbjct: 64 FSDFLDYWFDEYVMKNCKYNTQQTYKSFIN---------------INLKPNLGIYKIKQL 108 Query: 119 WKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKIP 176 +Q + K S T A+ ++I L A +++++ P + +P Sbjct: 109 NYAALQEFLNKQYAH------GYSKNTLARLRSIISHSLEMAVSPYQFIKVNPAKNLTLP 162 Query: 177 AVRN--KRVRWLEKEEAKRLIDE--CPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRR 232 N K + E ++I C ++ A TG+R + L W +D +++ Sbjct: 163 RFDNIAKENIVISIENFNKIIGRFPCGTSFYIPLQIAFNTGMRVGEVCGLTWDCVDFEKK 222 Query: 233 VAWVNP--------------EESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAK 278 + ++K +++ DT +L+ + + Sbjct: 223 TIRIEKILIFKTKQGYEFSTPKTK-GSIRTISIGDTLINILKTHKNWQEENKKNYGSYYN 281 Query: 279 RADGTSTPAVRKMRIDSKTSWLSACRRAGIE-DFRFHDLRHTWASWLIQSGVPLSVLQEM 337 + T + +LS ++ F FH LRHT A+ L++ G + +Q+ Sbjct: 282 DNNFVCTKENGSFVTMTSLRYLSRIINMELQIKFNFHSLRHTHATMLLEGGANIKDIQDR 341 Query: 338 GGWESIEMVRR-YAHLAPNHLTEHARKIDDIFGDNV 372 G Y+H+ +++I V Sbjct: 342 LGHSKFSTTMDLYSHVTAKMQNSTVNILENILNQEV 377 >UniRef50_A5EBE3 Putative phage related integrase n=1 Tax=Bradyrhizobium sp. BTAi1 RepID=A5EBE3_BRASB Length = 434 Score = 160 bits (404), Expect = 9e-38, Method: Composition-based stats. Identities = 93/420 (22%), Positives = 156/420 (37%), Gaps = 90/420 (21%) Query: 9 IWYASYSL-PGGKRIKES-----LGTKDKRQAQELHDKRKAELWRV-----EKLGDLPDV 57 W+ Y GG+R+ + QA++ + A + ++L + + Sbjct: 41 SWFIEYRPGAGGRRVAKRRYYFGSREFTPEQARQTAKELLANVALGGDPMKDRLHERQSL 100 Query: 58 TFEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSA-VSRMHNRKTK 116 TF E R+L E+A+ K + + + + KI +A ++R+H + K Sbjct: 101 TFSEFAERYLSEEAEPKLKPGTVANYRIAVRRHANPEIGKLKLHKISNADLARLHTKIGK 160 Query: 117 EIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAER-DWKWLEKAPVIKI 175 ST + L + +I R A D + P I Sbjct: 161 ------------------------TSTVNANRTLECVSSIFRYAVTCDIVPVGHNPTKGI 196 Query: 176 PAVR-NKRVRWLEKEEAKRL---------------IDECPEPLK---------------- 203 A R N+R R+L +E RL IDE K Sbjct: 197 RAFRENRRERFLNSDELARLGSAIREAETVGIPYEIDETKPTSKHAPKPENRRTKIDSYT 256 Query: 204 -SVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQ 262 + ++ + TG R I++L+W +D +R + + +SK+ R V LN A VL Sbjct: 257 AAALRLLILTGARLREILHLKWDYVDFERGLLLL--PDSKTGRKAIV-LNVPALAVLSSL 313 Query: 263 IGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWAS 322 K +F + RAD W + RA ++ R HDLRHT AS Sbjct: 314 DRKGQYVIFSEQEDKPRAD-------------LNRPWRTISARAKLQGVRLHDLRHTHAS 360 Query: 323 WLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARK----IDDIFGDNVPNMSHS 378 +G+ L ++ ++ G +RYAHL + L + + K I GD+ +++ S Sbjct: 361 VGAGAGLGLPIIGKLLGHTQASTTQRYAHLDSDPLQKASNKIAASISAAMGDDAGHVAQS 420 >UniRef50_C6BFQ2 Integrase family protein n=4 Tax=Betaproteobacteria RepID=C6BFQ2_RALP1 Length = 412 Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 67/321 (20%), Positives = 123/321 (38%), Gaps = 47/321 (14%) Query: 53 DLPDVTFEEACLRWLEEKA--DKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRM 110 ++TF + ++ + + +KK+ D DK + + +L + Sbjct: 103 RRAEMTFGDLFDQYYKNHSLPNKKTSDEDKQKFDQYLSS--------------NRDGVNL 148 Query: 111 HNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKA 170 +R+ I K + K T + LA++ +I A W + Sbjct: 149 ASRQLSAISKADIAQLFGKISMEHKI--------TANRVLALVSSIFGKAIEWGIWNQMN 200 Query: 171 PVIKIPAVR-NKRVRWLEKEEAKRLIDEC----PEPLKSVVKFALATGLRKSNIINLEWQ 225 P I R N R R+L +E + + L+ + +L TG R+SN++ + W+ Sbjct: 201 PCQGIRRNRENSRDRFLHPDELPKFFEHVLAYPNATLRDYMLVSLLTGARRSNVLAMRWE 260 Query: 226 QIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIG----KHHKWVFVHTKAAKRAD 281 ++++R ++ E+K+ V L A +LR++ + +VF T + Sbjct: 261 DVNLERAEWRIH--ETKNGTPQSVPLVPDAVALLRNRQEMPECEDSPFVFPGTGKSGHL- 317 Query: 282 GTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWE 341 ++ K +W +AGI+D R HDLR T SW +G LSV+ + Sbjct: 318 -----------VEPKKAWKIVLTQAGIKDLRLHDLRRTMGSWQAGTGANLSVIGRSLNHK 366 Query: 342 SIEMVRRYAHLAPNHLTEHAR 362 S YA L + Sbjct: 367 STATTAIYARLWMEPVRSSME 387 >UniRef50_C5V2X2 Integrase family protein n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V2X2_9PROT Length = 353 Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 83/362 (22%), Positives = 146/362 (40%), Gaps = 63/362 (17%) Query: 25 SLGTKDKRQAQELHDKRKAELWRVEKLGDL--PDVTFEEACLRWLEEK-ADKKSLDSDKS 81 S ++R A++ ++E+ R E + +T E+ ++ EE+ A KK + Sbjct: 25 SKTFPNRRMAEQWVTITESEIMRGEFIQRKAVEVITLEKFLTKYSEERSAGKKGEKQELV 84 Query: 82 RIEFW-LEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKP 140 RI L + I+ I V + R+ + Sbjct: 85 RINKLKLHPLAKKAVSQITVDDIEDYVYQ------------------RRQDKSRRNPENN 126 Query: 141 VSTQTKAKHLAMIKAILRAAE-RDWKWLEKAPVIKI-----PAVRNKRVRWLEKEEAKRL 194 VS T + ++ A+ AA+ + W + PV I P ++RVR L EE RL Sbjct: 127 VSEATIRLEVMLLSAVFEAAKSKRWNYCRTNPVRDIDQDARPGKSSERVRRLVGEEESRL 186 Query: 195 IDECPEPLKS-----VVKFALATGLRKSNIIN------------LEWQQIDMQRRVAWVN 237 + + ++ VV+ A+AT R+S II L W+ +++ +R A + Sbjct: 187 LAALDKRCRNADIPLVVRLAIATAARQSEIIGKDSTSTRPASPGLCWENVNLAQRSAKLI 246 Query: 238 PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKT 297 ++K+ + + + D+A +L T + + Sbjct: 247 --DTKNGKDRIIPIGDSALALLSALPRP----------------ITGGRVFKVTQDGLIR 288 Query: 298 SWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHL 357 S+ +AC A IED FHDLRH S ++++G+ L +Q + G + EMV+RY HL L Sbjct: 289 SFAAACVDAKIEDLTFHDLRHEATSRMVEAGLSLLEVQSVTGHSNAEMVKRYTHLDTLRL 348 Query: 358 TE 359 + Sbjct: 349 AK 350 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P24218 Prophage DLP12 integrase n=101 Tax=root RepID=IN... 429 e-119 UniRef50_Q93K89 Integrase of Shigella flexneri bacteriophage X n... 369 e-101 UniRef50_C3X1W0 Phage integrase n=3 Tax=Betaproteobacteria RepID... 325 2e-87 UniRef50_B7J7H0 Site-specific recombinase, phage integrase famil... 324 4e-87 UniRef50_A1AN30 Phage integrase family protein n=1 Tax=Pelobacte... 314 5e-84 UniRef50_C8VWS4 Integrase family protein n=1 Tax=Desulfotomaculu... 305 3e-81 UniRef50_C3X1P3 Phage integrase n=1 Tax=Oxalobacter formigenes H... 304 5e-81 UniRef50_Q5ZTV4 Prophage dlp12 integrase n=2 Tax=Legionellales R... 303 8e-81 UniRef50_C6M764 Xylulose-5-phosphate/fructose-6-phosphate phosph... 301 3e-80 UniRef50_Q31HE5 Tyrosine recombinase family protein n=1 Tax=Thio... 300 6e-80 UniRef50_Q2LV83 Phage integrase family protein n=1 Tax=Syntrophu... 297 4e-79 UniRef50_A1V8M7 Site-specific recombinase, phage integrase famil... 297 4e-79 UniRef50_Q1Q549 Similar to site-specific tyrosine recombinase n=... 295 1e-78 UniRef50_B5YIK4 Site specific recombinase n=1 Tax=Thermodesulfov... 295 2e-78 UniRef50_A8UUR8 Phage integrase family protein n=1 Tax=Hydrogeni... 294 3e-78 UniRef50_C6HV65 Putative phage integrase n=1 Tax=Leptospirillum ... 293 5e-78 UniRef50_A0YFT5 Phage integrase n=1 Tax=marine gamma proteobacte... 292 2e-77 UniRef50_Q9T1P3 Integrase n=4 Tax=root RepID=Q9T1P3_BPD3 290 6e-77 UniRef50_Q47H88 Phage integrase n=1 Tax=Dechloromonas aromatica ... 290 8e-77 UniRef50_D2TXV6 Phage integrase n=3 Tax=root RepID=D2TXV6_9ENTR 286 1e-75 UniRef50_B6ALQ5 Integrase n=1 Tax=Leptospirillum sp. Group II '5... 286 1e-75 UniRef50_B7DTQ3 Integrase family protein n=2 Tax=Bacillales RepI... 285 2e-75 UniRef50_Q45YI6 Prophage integrase n=5 Tax=root RepID=Q45YI6_9CAUD 283 5e-75 UniRef50_C9MEM4 Prophage integrase n=1 Tax=Haemophilus influenza... 283 6e-75 UniRef50_C6HUB8 Phage integrase family protein n=1 Tax=Leptospir... 283 9e-75 UniRef50_Q2RHJ2 Phage integrase n=3 Tax=Firmicutes RepID=Q2RHJ2_... 281 3e-74 UniRef50_A8MGP9 Integrase family protein n=1 Tax=Alkaliphilus or... 280 4e-74 UniRef50_A8UVD2 Phage integrase family protein n=1 Tax=Hydrogeni... 280 5e-74 UniRef50_B7DTD1 Integrase family protein n=2 Tax=Alicyclobacillu... 280 8e-74 UniRef50_UPI0001A444C2 Tyrosine recombinase xerD n=1 Tax=Pectoba... 278 2e-73 UniRef50_C6MS46 Integrase family protein n=1 Tax=Geobacter sp. M... 278 3e-73 UniRef50_A1K6M5 Site-specific recombinase, phage integrase famil... 275 2e-72 UniRef50_B0USU3 Phage integrase family protein n=6 Tax=Pasteurel... 275 2e-72 UniRef50_C3L682 Prophage LambdaBa04, site-specific recombinase, ... 274 4e-72 UniRef50_Q1AUQ4 Phage integrase n=3 Tax=Rubrobacter xylanophilus... 274 5e-72 UniRef50_D2LSV7 Integrase family protein n=1 Tax=Bacillus cellul... 273 6e-72 UniRef50_C5AEN7 Prophage integrase n=19 Tax=Burkholderia RepID=C... 272 1e-71 UniRef50_C2RY84 Prophage LambdaBa04, site-specific recombinase, ... 272 1e-71 UniRef50_Q5X3B3 Putative uncharacterized protein n=2 Tax=Gammapr... 271 3e-71 UniRef50_B6ALG3 Integrase n=1 Tax=Leptospirillum sp. Group II '5... 270 7e-71 UniRef50_B7IY65 DNA integration/recombination/invertion protein ... 268 2e-70 UniRef50_UPI000196D4B7 site-specific recombinase, phage integras... 268 2e-70 UniRef50_Q0AUP6 Phage integrase n=1 Tax=Syntrophomonas wolfei su... 267 6e-70 UniRef50_C9RBE5 Integrase family protein n=1 Tax=Ammonifex degen... 264 4e-69 UniRef50_B2KEQ8 Integrase family protein n=1 Tax=Elusimicrobium ... 264 4e-69 UniRef50_B7KWK2 Integrase family protein n=1 Tax=Methylobacteriu... 264 5e-69 UniRef50_A4ILC8 DNA integration/recombination/invertion protein ... 264 5e-69 UniRef50_B9MR26 Integrase family protein n=2 Tax=Anaerocellum th... 263 1e-68 UniRef50_A6G3J3 Site-specific recombinase, phage integrase famil... 263 1e-68 UniRef50_C8VWK7 Integrase family protein n=1 Tax=Desulfotomaculu... 262 2e-68 UniRef50_C1XYN2 Site-specific recombinase XerD n=1 Tax=Meiotherm... 262 2e-68 UniRef50_C6NU13 Site-specific recombinase, phage integrase famil... 262 2e-68 UniRef50_B4BIA4 Integrase family protein n=2 Tax=Geobacillus Rep... 261 4e-68 UniRef50_C0GWH6 Integrase family protein n=3 Tax=Desulfonatronos... 261 4e-68 UniRef50_B0KAT2 Phage integrase family protein n=7 Tax=Clostridi... 260 6e-68 UniRef50_Q3Z840 Site-specific recombinase, phage integrase famil... 260 8e-68 UniRef50_A8UWI5 Phage integrase n=1 Tax=Hydrogenivirga sp. 128-5... 258 2e-67 UniRef50_Q1IPY0 Phage integrase n=1 Tax=Candidatus Koribacter ve... 258 3e-67 UniRef50_B1B8Q2 Phage integrase n=1 Tax=Clostridium botulinum C ... 258 4e-67 UniRef50_C9AMW3 Phage integrase n=8 Tax=Enterococcus faecium Rep... 257 4e-67 UniRef50_Q3ABG2 Prophage LambdaCh01, site-specific recombinase, ... 257 6e-67 UniRef50_C4KAG8 Integrase family protein n=1 Tax=Thauera sp. MZ1... 256 9e-67 UniRef50_A8ZUN3 Integrase family protein n=2 Tax=Desulfobacterac... 256 1e-66 UniRef50_B9MP49 Integrase family protein n=1 Tax=Anaerocellum th... 256 1e-66 UniRef50_B1RM53 Phage integrase n=4 Tax=Clostridium RepID=B1RM53... 256 1e-66 UniRef50_B1VP49 Putative phage integrase n=1 Tax=Streptomyces gr... 255 2e-66 UniRef50_C6HW36 Putative phage integrase n=1 Tax=Leptospirillum ... 254 4e-66 UniRef50_B8J3W5 Putative uncharacterized protein n=1 Tax=Desulfo... 253 6e-66 UniRef50_Q1NPW4 Phage integrase n=5 Tax=Deltaproteobacteria RepI... 253 6e-66 UniRef50_D1C8V1 Integrase family protein n=1 Tax=Sphaerobacter t... 253 6e-66 UniRef50_A9VJZ8 Integrase family protein n=15 Tax=Bacillus cereu... 252 2e-65 UniRef50_C4KVM9 Site-specific recombinase, phage integrase famil... 252 2e-65 UniRef50_B9MQ70 Integrase family protein n=1 Tax=Anaerocellum th... 252 2e-65 UniRef50_B8D1P6 Phage integrase family protein n=1 Tax=Halotherm... 251 3e-65 UniRef50_C0DT82 Putative uncharacterized protein n=1 Tax=Eikenel... 251 3e-65 UniRef50_A3V904 Phage integrase n=5 Tax=Rhodobacteraceae RepID=A... 251 4e-65 UniRef50_D1RC05 Putative uncharacterized protein n=1 Tax=Parachl... 250 4e-65 UniRef50_B2V4P6 Phage integrase family protein n=9 Tax=root RepI... 250 6e-65 UniRef50_Q0VMT6 Rci protein n=22 Tax=Proteobacteria RepID=Q0VMT6... 250 8e-65 UniRef50_C0EDT0 Putative uncharacterized protein n=2 Tax=Clostri... 249 1e-64 UniRef50_C6NUL0 Integrase n=1 Tax=Acidithiobacillus caldus ATCC ... 249 1e-64 UniRef50_UPI000169495E prophage LambdaBa04, site-specific recomb... 248 2e-64 UniRef50_C5SDU6 Integrase family protein n=1 Tax=Allochromatium ... 248 2e-64 UniRef50_C2Z776 Prophage LambdaBa04, site-specific recombinase, ... 248 3e-64 UniRef50_C2YK72 Phage integrase n=3 Tax=Bacillus cereus group Re... 247 4e-64 UniRef50_Q8ERR7 Hypothetical conserved protein n=1 Tax=Oceanobac... 247 5e-64 UniRef50_C0N6F6 Site-specific recombinase, phage integrase famil... 247 5e-64 UniRef50_D2BJR0 Site-specific recombinase, phage integrase famil... 247 6e-64 UniRef50_B7RVJ7 Site-specific recombinase, phage integrase famil... 246 7e-64 UniRef50_A6TLJ2 Phage integrase family protein n=1 Tax=Alkaliphi... 246 8e-64 UniRef50_B1JZG3 Integrase family protein n=1 Tax=Burkholderia ce... 246 1e-63 UniRef50_A8V435 Phage integrase family protein n=2 Tax=Hydrogeni... 246 1e-63 UniRef50_Q6AMU1 Related to integrase/recombinase n=1 Tax=Desulfo... 246 1e-63 UniRef50_C0QB98 Putative uncharacterized protein n=1 Tax=Desulfo... 245 2e-63 UniRef50_A1AUY6 Phage integrase family protein n=2 Tax=Desulfuro... 245 2e-63 UniRef50_B0U2H0 Phage integrase n=4 Tax=Xylella fastidiosa RepID... 245 2e-63 UniRef50_C3IU95 DNA integration/recombination/inversion protein ... 245 3e-63 UniRef50_D1CFY4 Integrase family protein n=1 Tax=Thermobaculum t... 245 3e-63 UniRef50_B0PGN2 Putative uncharacterized protein n=2 Tax=Clostri... 244 4e-63 UniRef50_D1A578 Integrase family protein n=1 Tax=Thermomonospora... 243 6e-63 UniRef50_B3E8B2 Integrase family protein n=1 Tax=Geobacter lovle... 243 7e-63 UniRef50_A8L4Q7 Integrase family protein n=9 Tax=Actinomycetales... 243 8e-63 UniRef50_A6FXR9 Phage integrase n=1 Tax=Plesiocystis pacifica SI... 243 1e-62 UniRef50_A4J1T6 Phage integrase family protein n=1 Tax=Desulfoto... 242 1e-62 UniRef50_C2NSI2 DNA integration/recombination/invertion protein ... 241 2e-62 UniRef50_D1XEM4 Integrase family protein n=1 Tax=Streptomyces sp... 241 2e-62 UniRef50_A8MGA1 Integrase family protein n=7 Tax=Clostridiaceae ... 241 4e-62 UniRef50_Q3SHX2 Site-specific recombinase, phage integrase famil... 241 4e-62 UniRef50_Q7MKK6 Integrase n=6 Tax=Proteobacteria RepID=Q7MKK6_VIBVY 240 5e-62 UniRef50_Q3Z6H5 Site-specific recombinase, phage integrase famil... 240 7e-62 UniRef50_C1SNQ2 Site-specific recombinase XerD n=1 Tax=Denitrovi... 240 8e-62 UniRef50_A6P1V8 Putative uncharacterized protein n=2 Tax=Bactero... 240 8e-62 UniRef50_C1CZ59 Putative Tyrosine recombinase xerC-like protein ... 240 9e-62 UniRef50_C9XJT1 Integrase n=6 Tax=Clostridium difficile RepID=C9... 240 9e-62 UniRef50_Q0H247 DNA integration/recombination protein n=6 Tax=ro... 240 1e-61 UniRef50_A4J0G7 Phage integrase family protein n=1 Tax=Desulfoto... 239 1e-61 UniRef50_C9RA80 Integrase family protein n=1 Tax=Ammonifex degen... 239 1e-61 UniRef50_C0QHJ7 Phage integrase family protein n=1 Tax=Desulfoba... 239 1e-61 UniRef50_D2SBK5 Integrase family protein n=1 Tax=Geodermatophilu... 239 1e-61 UniRef50_A0LQG0 Phage integrase family protein n=2 Tax=Deltaprot... 239 2e-61 UniRef50_B1JDB3 Integrase family protein n=3 Tax=root RepID=B1JD... 238 2e-61 UniRef50_UPI0001C37C27 integrase family protein n=1 Tax=Ruminoco... 238 3e-61 UniRef50_Q831G3 Site-specific recombinase, phage integrase famil... 238 3e-61 UniRef50_B0UQB2 Integrase family protein n=5 Tax=Rhizobiales Rep... 238 3e-61 UniRef50_B4V6V4 Phage integrase n=6 Tax=Streptomyces RepID=B4V6V... 237 4e-61 UniRef50_A4XLL4 Phage integrase family protein n=1 Tax=Caldicell... 237 5e-61 UniRef50_C0XLK8 Phage integrase family site specific recombinase... 237 5e-61 UniRef50_A1SRZ5 Phage integrase family protein n=1 Tax=Psychromo... 236 7e-61 UniRef50_A3T0W5 Site-specific integrase/recombinase-like n=3 Tax... 236 9e-61 UniRef50_A4TWM2 Phage integrase n=1 Tax=Magnetospirillum gryphis... 236 9e-61 UniRef50_Q1D2W1 Site-specific recombinase, phage integrase famil... 236 1e-60 UniRef50_A5N1F6 Integrase-related protein n=3 Tax=Clostridia Rep... 236 1e-60 UniRef50_A6VKB4 Phage integrase family protein n=9 Tax=Pasteurel... 236 1e-60 UniRef50_D0L542 Integrase family protein n=3 Tax=Bacteria RepID=... 235 2e-60 UniRef50_B2TMD1 Prophage LambdaBa04, site-specific recombinase, ... 235 2e-60 UniRef50_B9JRM6 Integrase protein n=1 Tax=Agrobacterium vitis S4... 235 2e-60 UniRef50_C5UVC6 Site-specific recombinase, phage integrase famil... 235 3e-60 UniRef50_C4XTG1 Site-specific recombinase n=1 Tax=Desulfovibrio ... 235 3e-60 UniRef50_C6QSP6 Integrase family protein n=1 Tax=Geobacillus sp.... 233 6e-60 UniRef50_Q0K8W4 Phage integrase family protein n=1 Tax=Ralstonia... 233 7e-60 UniRef50_C9R814 Integrase family protein n=2 Tax=Ammonifex degen... 233 7e-60 UniRef50_B5H9T3 TraSA integrase fusion protein n=4 Tax=Streptomy... 233 9e-60 UniRef50_D2SF19 LigA n=1 Tax=Geodermatophilus obscurus DSM 43160... 233 1e-59 UniRef50_C6MQB4 Integrase family protein n=1 Tax=Geobacter sp. M... 233 1e-59 UniRef50_Q2W123 Integrase n=1 Tax=Magnetospirillum magneticum AM... 232 2e-59 UniRef50_C8R239 Integrase family protein n=1 Tax=Desulfurivibrio... 232 2e-59 UniRef50_B3T0I4 Putative Phage integrase family protein n=2 Tax=... 231 3e-59 UniRef50_D0ADR3 Predicted protein n=2 Tax=Enterococcus faecium R... 231 3e-59 UniRef50_D1BL69 Integrase family protein n=1 Tax=Veillonella par... 231 4e-59 UniRef50_A6VBP4 Site-specific recombinase, phage integrase famil... 231 4e-59 UniRef50_B1FJ84 Integrase family protein n=1 Tax=Burkholderia am... 231 5e-59 UniRef50_A2SD71 Putative uncharacterized protein n=1 Tax=Methyli... 231 5e-59 UniRef50_D2S8K7 Integrase family protein n=1 Tax=Geodermatophilu... 230 5e-59 UniRef50_A5IH69 Site specific recombinase n=2 Tax=Legionella pne... 230 6e-59 UniRef50_A5N1D5 Phage integrase-related protein n=2 Tax=Clostrid... 230 6e-59 UniRef50_UPI00003841F3 COG0582: Integrase n=1 Tax=Magnetospirill... 230 6e-59 UniRef50_B0TI08 Phage integrase family protein n=14 Tax=root Rep... 230 7e-59 UniRef50_Q72B79 Site-specific recombinase, phage integrase famil... 230 8e-59 UniRef50_A5EQT5 Putative prophage integrase n=1 Tax=Bradyrhizobi... 230 8e-59 UniRef50_C1IAU4 Phage integrase n=1 Tax=Clostridium sp. 7_2_43FA... 230 1e-58 UniRef50_A1VU89 Phage integrase family protein n=2 Tax=Burkholde... 229 1e-58 UniRef50_Q2JGT4 Phage integrase n=4 Tax=Frankia RepID=Q2JGT4_FRASC 229 1e-58 UniRef50_C8WVH7 Integrase family protein n=1 Tax=Alicyclobacillu... 229 1e-58 UniRef50_B8I354 Integrase family protein n=1 Tax=Clostridium cel... 229 1e-58 UniRef50_D0DGR8 Integrase n=1 Tax=Lactobacillus crispatus MV-3A-... 228 2e-58 UniRef50_B1R824 Prophage LambdaBa04, site-specific recombinase, ... 228 2e-58 UniRef50_C1B977 Putative integrase n=2 Tax=Nocardiaceae RepID=C1... 228 3e-58 UniRef50_C3EB65 DNA integration/recombination/invertion protein ... 228 3e-58 UniRef50_A9AEX0 Tyrosine recombinase n=1 Tax=Burkholderia multiv... 227 4e-58 UniRef50_Q0FPA2 Probable site-specific integrase/recombinase n=2... 227 5e-58 UniRef50_C4Z3W8 Integrase/recombinase XerC n=7 Tax=Clostridiales... 227 5e-58 UniRef50_C4FP65 Putative uncharacterized protein n=1 Tax=Veillon... 227 5e-58 UniRef50_B9KV34 Phage integrase n=4 Tax=Rhodobacter RepID=B9KV34... 227 5e-58 UniRef50_C0GUW3 Integrase family protein n=1 Tax=Desulfonatronos... 227 6e-58 UniRef50_UPI0001BCC5A1 phage integrase n=1 Tax=Aeromicrobium mar... 227 6e-58 UniRef50_Q1GLB2 Phage integrase n=12 Tax=Rhodobacterales RepID=Q... 227 6e-58 UniRef50_B6FZV4 Putative uncharacterized protein n=1 Tax=Clostri... 227 7e-58 UniRef50_C8WHA4 Integrase family protein n=3 Tax=Bacteria RepID=... 226 7e-58 UniRef50_B7GVF6 Tyrosine recombinase xerC n=1 Tax=Acinetobacter ... 226 8e-58 UniRef50_D2L4K8 Integrase family protein n=1 Tax=Desulfovibrio s... 226 9e-58 UniRef50_C3C7W0 Phage integrase n=2 Tax=Bacillus thuringiensis R... 226 1e-57 UniRef50_Q98MQ9 Bacteriophage integrase n=5 Tax=Rhizobiales RepI... 226 1e-57 UniRef50_A8LM37 Integrase family protein n=3 Tax=Rhodobacterales... 226 1e-57 UniRef50_A1WTV4 Phage integrase family protein n=1 Tax=Halorhodo... 226 1e-57 UniRef50_A4XMZ7 Phage integrase family protein n=3 Tax=Clostridi... 225 2e-57 UniRef50_B0PGN1 Putative uncharacterized protein n=2 Tax=Clostri... 225 2e-57 UniRef50_C7LSP4 Integrase family protein n=1 Tax=Desulfomicrobiu... 225 2e-57 UniRef50_Q1K3L6 Phage integrase n=1 Tax=Desulfuromonas acetoxida... 225 2e-57 UniRef50_UPI00016AD797 phage integrase family protein n=1 Tax=Bu... 225 2e-57 UniRef50_C4RQL8 Integrase n=2 Tax=root RepID=C4RQL8_9ACTO 225 3e-57 UniRef50_Q2W8W7 Integrase n=2 Tax=Magnetospirillum RepID=Q2W8W7_... 225 3e-57 UniRef50_Q3JF08 Phage integrase n=2 Tax=Nitrosococcus oceani Rep... 225 3e-57 UniRef50_B8FKX9 Integrase family protein n=2 Tax=Desulfatibacill... 224 3e-57 UniRef50_B8J4X3 Integrase family protein n=1 Tax=Desulfovibrio d... 224 4e-57 UniRef50_Q65EQ4 Lambda integrase-like, N-terminal,DNA breaking-r... 224 4e-57 UniRef50_A4XMV7 Phage integrase family protein n=2 Tax=Caldicell... 224 4e-57 UniRef50_Q2IFG9 Phage integrase n=2 Tax=Cystobacterineae RepID=Q... 224 4e-57 UniRef50_B1M1F6 Integrase family protein n=2 Tax=Methylobacteriu... 224 5e-57 UniRef50_C6HVL4 Phage integrase family protein n=1 Tax=Leptospir... 224 5e-57 UniRef50_A0LL76 Phage integrase family protein n=1 Tax=Syntropho... 223 6e-57 UniRef50_Q1MA85 Putative shufflon-specific DNA recombinase n=3 T... 223 6e-57 UniRef50_Q1GIK7 Phage integrase n=5 Tax=Rhodobacteraceae RepID=Q... 223 7e-57 UniRef50_A1VC91 Phage integrase family protein n=1 Tax=Desulfovi... 223 8e-57 UniRef50_A0LKH4 Phage integrase family protein n=1 Tax=Syntropho... 223 8e-57 UniRef50_C2HC71 Phage integrase family site specific recombinase... 223 9e-57 UniRef50_A6NRR1 Putative uncharacterized protein n=1 Tax=Bactero... 223 1e-56 UniRef50_C4XKJ5 Site-specific recombinase n=1 Tax=Desulfovibrio ... 223 1e-56 UniRef50_C6MZB6 Putative integrase n=1 Tax=Legionella drancourti... 223 1e-56 UniRef50_Q1BC50 Phage integrase n=4 Tax=Mycobacterium RepID=Q1BC... 222 1e-56 UniRef50_B6R5P1 Phage integrase n=1 Tax=Pseudovibrio sp. JE062 R... 222 1e-56 UniRef50_C9AQ08 Phage integrase n=15 Tax=Enterococcus faecium Re... 222 2e-56 UniRef50_B1I9D1 Site-specific recombinase, phage integrase famil... 222 2e-56 UniRef50_B6ASA1 Recombinase n=12 Tax=Bacteria RepID=B6ASA1_9BACT 222 2e-56 UniRef50_B6G0S2 Putative uncharacterized protein n=1 Tax=Clostri... 221 2e-56 UniRef50_C5TV13 Integrase family protein n=1 Tax=Desulfovibrio v... 221 2e-56 UniRef50_A7FCB1 Shufflon-specific DNA recombinase n=2 Tax=Entero... 221 3e-56 UniRef50_A6SV87 Site-specific recombinase, phage integrase famil... 221 4e-56 UniRef50_D2NYS0 Integrase n=1 Tax=Listeria monocytogenes 08-5578... 221 4e-56 UniRef50_A4NZB4 Prophage integrase n=1 Tax=Haemophilus influenza... 221 4e-56 UniRef50_UPI0001C375E4 hypothetical protein RflaF_02473 n=2 Tax=... 221 4e-56 UniRef50_Q30Q21 Phage integrase n=1 Tax=Sulfurimonas denitrifica... 220 5e-56 UniRef50_D0KZD4 Integrase family protein n=1 Tax=Halothiobacillu... 220 5e-56 UniRef50_C7I1A8 Integrase family protein n=1 Tax=Thiomonas inter... 220 6e-56 UniRef50_Q1RJE3 Integrase n=9 Tax=Rickettsia RepID=Q1RJE3_RICBR 220 7e-56 UniRef50_A4A4J3 Integrase n=3 Tax=Gammaproteobacteria RepID=A4A4... 220 8e-56 UniRef50_A5VJF0 Phage integrase family protein n=4 Tax=Lactobaci... 220 9e-56 UniRef50_A6G3E1 Phage integrase n=2 Tax=Plesiocystis pacifica SI... 220 9e-56 UniRef50_Q0F389 Site-specific recombinase, phage integrase famil... 220 1e-55 UniRef50_A7VEW1 Putative uncharacterized protein n=4 Tax=Clostri... 219 1e-55 UniRef50_Q3A6E0 Site-specific recombinase/integrase n=3 Tax=Pelo... 218 2e-55 UniRef50_B2TH09 Integrase family protein n=4 Tax=Proteobacteria ... 218 2e-55 UniRef50_UPI0001694281 DNA integration/recombination/invertion p... 218 2e-55 UniRef50_C6E4Z2 Integrase family protein n=2 Tax=Geobacter RepID... 218 2e-55 UniRef50_B3WDC1 Integrase n=3 Tax=root RepID=B3WDC1_LACCB 218 2e-55 UniRef50_C4XJH7 Putative site-specific recombinase n=3 Tax=Desul... 218 2e-55 UniRef50_C6XR20 Integrase family protein n=1 Tax=Hirschia baltic... 218 2e-55 UniRef50_A0QET6 TraSA:integrase fusion protein n=1 Tax=Mycobacte... 218 3e-55 UniRef50_Q1MNY2 Integrase n=1 Tax=Lawsonia intracellularis PHE/M... 218 3e-55 UniRef50_P96629 ICEBs1 integrase n=1 Tax=Bacillus subtilis RepID... 218 3e-55 UniRef50_C7HXJ3 Integrase family protein n=2 Tax=Thiomonas inter... 218 4e-55 UniRef50_Q2LQY7 Integrase family protein n=1 Tax=Syntrophus acid... 218 4e-55 Sequences not found previously or not previously below threshold: UniRef50_B0KAZ5 Phage integrase family protein n=3 Tax=Thermoana... 261 4e-68 UniRef50_B2TKJ3 Phage integrase family protein n=4 Tax=Clostridi... 230 1e-58 UniRef50_B0ABY5 Putative uncharacterized protein n=3 Tax=Clostri... 227 5e-58 UniRef50_C7WMG1 Integrase n=9 Tax=Enterococcus RepID=C7WMG1_ENTFA 225 3e-57 UniRef50_C1IBC3 Phage integrase n=1 Tax=Clostridium sp. 7_2_43FA... 223 7e-57 UniRef50_C4V5B3 Prophage LambdaCh01, site-specific recombinase p... 223 8e-57 UniRef50_UPI0001C35B62 integrase family protein n=1 Tax=Clostrid... 219 1e-55 UniRef50_C4ZDW8 Integrase n=34 Tax=Bacteria RepID=C4ZDW8_EUBR3 218 3e-55 UniRef50_B2THD3 Site-specific recombinase, phage integrase famil... 218 4e-55 >UniRef50_P24218 Prophage DLP12 integrase n=101 Tax=root RepID=INTD_ECOLI Length = 387 Score = 429 bits (1104), Expect = e-119, Method: Composition-based stats. Identities = 387/387 (100%), Positives = 387/387 (100%) Query: 1 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFE 60 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFE Sbjct: 1 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFE 60 Query: 61 EACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 EACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK Sbjct: 61 EACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 Query: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRN 180 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRN Sbjct: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRN 180 Query: 181 KRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEE 240 KRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEE Sbjct: 181 KRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEE 240 Query: 241 SKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWL 300 SKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWL Sbjct: 241 SKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWL 300 Query: 301 SACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEH 360 SACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEH Sbjct: 301 SACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEH 360 Query: 361 ARKIDDIFGDNVPNMSHSEIMEDIKKA 387 ARKIDDIFGDNVPNMSHSEIMEDIKKA Sbjct: 361 ARKIDDIFGDNVPNMSHSEIMEDIKKA 387 >UniRef50_Q93K89 Integrase of Shigella flexneri bacteriophage X n=8 Tax=root RepID=Q93K89_ECOLX Length = 386 Score = 369 bits (949), Expect = e-101, Method: Composition-based stats. Identities = 205/381 (53%), Positives = 266/381 (69%), Gaps = 1/381 (0%) Query: 1 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFE 60 MS+ R W+ + P G R++ SL T DKRQAQELHD+ KAE WRV+ LG+ P F+ Sbjct: 1 MSIKLRGGTWHCDFVAPDGSRVRRSLETSDKRQAQELHDRLKAEAWRVKNLGESPKKLFK 60 Query: 61 EACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 EAC+RWL EK+DKKS+D DKS I FW+ HF L DI+ KI AV M NR+ + W+ Sbjct: 61 EACIRWLREKSDKKSIDDDKSIISFWMLHFRETILSDITTEKIMEAVDGMENRRHRLNWE 120 Query: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRN 180 +R GK +P Y+PK S TK +HLA+++AIL A +W WL++ P I P V+N Sbjct: 121 MSRDRCLRLGKPVPEYKPKLASKGTKTRHLAILRAILNMAV-EWGWLDRTPKISTPRVKN 179 Query: 181 KRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEE 240 R+RWL +EE+KRL E VV FA+ TGLR+SN+ +LEW Q+D+ +++AW++P+E Sbjct: 180 GRIRWLTEEESKRLFAEIAPHFFPVVMFAITTGLRRSNVTDLEWSQVDLDKKMAWMHPDE 239 Query: 241 SKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWL 300 +K+ AIGV LN+TAC++LR Q G H +WVFVHTK A R+DGT T AVRKMR DS +W Sbjct: 240 TKAGNAIGVPLNETACQILRKQQGLHKRWVFVHTKPAYRSDGTKTAAVRKMRTDSNKAWK 299 Query: 301 SACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEH 360 A +RAGI +FRFHDLRHTWASWL+QSGV L L+EMGGWE++EMV+RYAHL+ HLTEH Sbjct: 300 GALKRAGISNFRFHDLRHTWASWLVQSGVSLLALKEMGGWETLEMVQRYAHLSAGHLTEH 359 Query: 361 ARKIDDIFGDNVPNMSHSEIM 381 A KID I N N + E + Sbjct: 360 ASKIDAIISRNGTNTAQEENV 380 >UniRef50_C3X1W0 Phage integrase n=3 Tax=Betaproteobacteria RepID=C3X1W0_OXAFO Length = 354 Score = 325 bits (834), Expect = 2e-87, Method: Composition-based stats. Identities = 132/378 (34%), Positives = 204/378 (53%), Gaps = 41/378 (10%) Query: 1 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFE 60 M+L++R + ++ S++ P GKRI+ S GT ++++AQ+L DK K E W + LG T++ Sbjct: 1 MALYKRGKTYWISFTAPDGKRIRCSAGTSNRQKAQQLFDKLKHEAWNRKYLGIPERHTWD 60 Query: 61 EACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 EA L W+ EK DKKSL D S + + L +I+ I Sbjct: 61 EAALLWIREKTDKKSLKDDVSMLRWLTPFLRSRYLDEITRPMIARI-------------- 106 Query: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRN 180 + + ++L++++AI A + W+WL KAP I + Sbjct: 107 -------------GEIKKAESTPARANRYLSLLRAIFNRAVKIWEWLPKAPTITLYREPK 153 Query: 181 KRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEE 240 RVR+L EE +R+ DE P+ K + F++ TGLR+SN++NL W Q+D + ++ E Sbjct: 154 LRVRYLTPEEIRRVFDELPDHQKPIFTFSIMTGLRRSNVLNLRWDQVDFMQDAIIISGNE 213 Query: 241 SKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWL 300 K+ + V ++ T ++L DQ+GKH ++VF + + D KT++ Sbjct: 214 MKAGKTHVVPMSATVKQILMDQVGKHPQYVFTYR--------------GRRIGDIKTAFR 259 Query: 301 SACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEH 360 A +R GI D+R+HD RHTWAS LIQ+GVPL+ LQEMG W S EMV+RYAHL+P L E+ Sbjct: 260 KALKRTGITDYRWHDNRHTWASILIQNGVPLNELQEMGAWNSAEMVKRYAHLSPQKLKEN 319 Query: 361 ARKIDDIFGDNVPNMSHS 378 A+ +D+I V +S Sbjct: 320 AQVVDNILASAVTTLSQP 337 >UniRef50_B7J7H0 Site-specific recombinase, phage integrase family n=5 Tax=Bacteria RepID=B7J7H0_ACIF2 Length = 349 Score = 324 bits (831), Expect = 4e-87, Method: Composition-based stats. Identities = 143/385 (37%), Positives = 229/385 (59%), Gaps = 42/385 (10%) Query: 3 LFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEA 62 L++R + W+ S++ P G+RI+ S GT +K QA+ELHD KA+ WR +LGD P T+++A Sbjct: 2 LYKRGKTWWISFTTPNGQRIRRSAGTTEKAQAEELHDSLKAQAWRQVQLGDRPAYTWDDA 61 Query: 63 CLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQK 122 +RWL+EKA K SL +D+ + + +HF G+ L+D++ +I + + Sbjct: 62 GVRWLDEKAHKASLVTDEIFLAWLQDHFRGVPLRDLNRDRIMTVLQ-------------- 107 Query: 123 VQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKR 182 + S T ++A+I+++LRAA +W WL+ P+++ +R Sbjct: 108 -------------IKKTQTSASTANHYMALIRSMLRAAV-EWGWLDYPPLLRPYPTPTQR 153 Query: 183 VRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESK 242 VRWL E+A L++E P L+ + F+LATGLR+SN+ LEW Q+D+ R++AW++ +++K Sbjct: 154 VRWLTPEQAVLLLNELPPHLRDMAAFSLATGLRRSNVTGLEWSQLDLGRKIAWIHADQAK 213 Query: 243 SNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSA 302 + + I V L+D A +LR QIG H +VF + +++ + +W A Sbjct: 214 ARKPITVPLDDVAISILRAQIGNHPIYVFTYC-------------GKRVTQVNTKAWKKA 260 Query: 303 CRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHAR 362 RAGIE+FR+HDLRHTWASW IQ+G PL+ LQ++GGW S EMVR+YAHL+P HL ++A+ Sbjct: 261 LERAGIENFRWHDLRHTWASWHIQAGTPLNTLQDLGGWHSSEMVRKYAHLSPEHLAQYAQ 320 Query: 363 KIDDIFGDN-VPNMSHSEIMEDIKK 386 +S ++E+ K+ Sbjct: 321 NAGQNLQPAYGTKLSQPHLVEEAKR 345 >UniRef50_A1AN30 Phage integrase family protein n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1AN30_PELPD Length = 367 Score = 314 bits (804), Expect = 5e-84, Method: Composition-based stats. Identities = 95/373 (25%), Positives = 164/373 (43%), Gaps = 38/373 (10%) Query: 2 SLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVE----KLGDLPDV 57 ++RR + ++ +Y GK+ ES +K K A L RK E+ Sbjct: 7 GIYRRGKTFWITYMGVDGKQQWESTRSKLKADADYLLACRKKEVAEGITPVTFNRKKYTT 66 Query: 58 TFEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKE 117 TF++ ++LE ++ S R+ F +RL DI+ ++ S Sbjct: 67 TFDQLAEKYLEYCKAQRDYKSKAGRVRRLQRTFGEMRLIDITLEELERYQSA-------- 118 Query: 118 IWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEK-----APV 172 ++ K+ VS T + L +K + AE+ W + Sbjct: 119 -----RCTEAKQPKKEGGVSSGAVSPATVNRELTALKNMFTKAEQ-WGLIPDSTLKTVRK 172 Query: 173 IKIPAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRR 232 +++ N+R+R+L E L+D C L+ +V FAL TG R+ I++L W +D++ Sbjct: 173 VRLTKENNRRLRFLAVAEMTALVDSCSRGLREIVVFALNTGCRRGEILSLTWDHVDLKHG 232 Query: 233 VAWVNPEESKSNRAIGVALNDTACKVLRDQ-IGKHHKWVFVHTKAAKRADGTSTPAVRKM 291 + +SK+ + + +N + + +VF + R Sbjct: 233 FIRI--ADSKNGESRDIPINAALADMFKGVVRRIDSPYVFTNPDTGTR------------ 278 Query: 292 RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAH 351 D K S+ +ACRRA I +F FHDLRHT+AS L+ +GV L+ + + G +S+ M RY+H Sbjct: 279 YQDVKRSFATACRRAAIMNFHFHDLRHTFASHLVMNGVDLTTVSRLLGHKSLTMTLRYSH 338 Query: 352 LAPNHLTEHARKI 364 LAP+HL + ++ Sbjct: 339 LAPDHLKKAVERL 351 >UniRef50_C8VWS4 Integrase family protein n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VWS4_DESAS Length = 381 Score = 305 bits (781), Expect = 3e-81, Method: Composition-based stats. Identities = 78/393 (19%), Positives = 156/393 (39%), Gaps = 43/393 (10%) Query: 2 SLFRRNEIWYASYSL-PGGKRIKE-SLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTF 59 S+ +R + + Y + GGKR ++ G K K++A+ + +R E+ + + D T Sbjct: 4 SIVKRGKTYSIVYDINQGGKRKQKWESGFKTKKEAEAILAQRINEIEKGTYINPKKD-TL 62 Query: 60 EEACLRWLEEKADKKSLDSDKSRI----EFWLEHFEGIRLKDISEAKIYSAVSRMHNRKT 115 E+ +RW + S + + + + I L + +I +S+ Sbjct: 63 EDYLIRWFDTHKADLSPSTARRYEGIIKQHLIPSLGNIPLAKLQPLQIQEFLSKELEGGR 122 Query: 116 KEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--I 173 ++ K +S + ++ L A DW+ + + P + Sbjct: 123 QDNKKT---------------VGAGLSAASVNYEYRVLHKALNQAV-DWQLISRNPADLV 166 Query: 174 KIPAVRNKRVRWLEKEEAKRLIDECPE-PLKSVVKFALATGLRKSNIINLEWQQIDMQRR 232 K+P K + L +++ RL++E + L A+ TG+R ++ W+ ID+ R Sbjct: 167 KVPKPEKKDMVVLSEQDIARLLNEIKDNYLYIPTFLAIYTGMRLGEVLGSTWKDIDLNRG 226 Query: 233 VAWVN------------PEESKSNRA-IGVALNDTACKVLRDQIGKHHKWVFVHTKAAKR 279 + V + K+ ++ + ++ T K LR+ KW V + Sbjct: 227 ILSVRQASCQVKADDPEFKAPKTAKSKRNIDISQTVVKTLREHKKTQTKWKLVAGSNWQD 286 Query: 280 ADGTSTPAVRKM--RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEM 337 + + + + R G+ FH LRHT AS L+++G+ ++QE Sbjct: 287 NNLVCALQDGRPINPPSLSSYFRRVASRIGLF-VSFHALRHTHASLLLKAGIQPKIVQER 345 Query: 338 GGWESIEMVR-RYAHLAPNHLTEHARKIDDIFG 369 G +I + Y+H+ P + A K+DD+ Sbjct: 346 LGHSTIAVTMDIYSHVMPGMQRQAANKLDDMLK 378 >UniRef50_C3X1P3 Phage integrase n=1 Tax=Oxalobacter formigenes HOxBLS RepID=C3X1P3_OXAFO Length = 348 Score = 304 bits (778), Expect = 5e-81, Method: Composition-based stats. Identities = 135/386 (34%), Positives = 213/386 (55%), Gaps = 45/386 (11%) Query: 1 MSLFRRNEI--WYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 MSL++R + W+ + PGGKRI++S GT+DK +AQE HDK KA LW EKL P T Sbjct: 1 MSLYKRKDSSYWWIKITSPGGKRIQQSTGTEDKMKAQEYHDKIKAALWDEEKLNKKPQRT 60 Query: 59 FEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEI 118 ++EA +RWL E +DK++ D +++ + + L IS I R Sbjct: 61 WQEATVRWLNETSDKRTTREDITKLRWLHPILGNLTLDQISLPVIDMIRER--------- 111 Query: 119 WKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAV 178 + K S T ++L +++AIL A+ +W+W++ P IK+ Sbjct: 112 ------------------KLKEASKATVNRYLNLVRAILNRAKNEWEWIDGFPKIKMYKE 153 Query: 179 RNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNP 238 N R R L E+A +L+ E PE + +V FAL TGLR+ N++++EW+ +D++ R A+V Sbjct: 154 SNNRNRSLTPEQADKLLAELPEHQRDIVLFALYTGLRQRNVLDMEWEHVDLELRHAYV-- 211 Query: 239 EESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTS 298 +K+ A+ V LND A ++ QIGKH ++VF + + +R + + Sbjct: 212 PRTKNGEALAVPLNDVAMSIITKQIGKHPQFVFSYR-------------GKHIRYANTLA 258 Query: 299 WLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLT 358 W A RAGI DFR+HDLRHTWA+W ++G P LQ +GGW++ MV RYAH+AP L+ Sbjct: 259 WRKALVRAGITDFRWHDLRHTWATWQRKAGTPTHELQHLGGWKTRAMVERYAHIAPEALS 318 Query: 359 EHARKIDDI-FGDNVPNMSHSEIMED 383 A +++ I G + + +++ ++ Sbjct: 319 NAASRLNKIKLGYVLATLGENDVCKN 344 >UniRef50_Q5ZTV4 Prophage dlp12 integrase n=2 Tax=Legionellales RepID=Q5ZTV4_LEGPH Length = 334 Score = 303 bits (776), Expect = 8e-81, Method: Composition-based stats. Identities = 129/373 (34%), Positives = 196/373 (52%), Gaps = 40/373 (10%) Query: 1 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFE 60 M+L ++N W+ + G KRI+ S TK K+QAQ+ HD +LW + ++ Sbjct: 1 MALTKKNGFWWIDVTF-GDKRIRRSTRTKVKQQAQQFHDNFLQDLWSNKHTKLPQQKSWV 59 Query: 61 EACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 +A +RWLEE A K+SL +DK + F + L +I+ I Sbjct: 60 DAVVRWLEESAHKRSLVTDKFHLAFLDPYLGQKTLDEINAELIE---------------- 103 Query: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRN 180 E V+ T + L +I+AIL A ++W+W+ P+ ++ V N Sbjct: 104 ----------FIAQEKERTNVTPTTVNRMLEIIRAILNKAHKEWQWINTMPLFRMRKVEN 153 Query: 181 KRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEE 240 KR+RWL + +A +LI E P LK + F LATGLR+SN+ L+W ++D+ R+ A ++P++ Sbjct: 154 KRIRWLSRGQANKLIQELPNHLKDMAAFTLATGLRQSNVTQLQWSEVDLIRKHALIHPDQ 213 Query: 241 SKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWL 300 SK+ +AI V LN A ++ Q+G H +VF + + + + +W Sbjct: 214 SKTKKAIPVPLNSQAIVIIEKQVGLHPTFVFTY-------------FGKPVTRCNNHAWQ 260 Query: 301 SACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEH 360 A RAGI+DFR+HDLRHTWASW +Q+G L LQ++GGW EMV RYAHL+ +HL Sbjct: 261 KALIRAGIKDFRWHDLRHTWASWHVQNGTSLQELQQLGGWSEYEMVLRYAHLSSDHLKVA 320 Query: 361 ARKIDDIFGDNVP 373 A +I G Sbjct: 321 AERITKNSGTFSS 333 >UniRef50_C6M764 Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase n=3 Tax=Neisseriaceae RepID=C6M764_NEISI Length = 352 Score = 301 bits (771), Expect = 3e-80, Method: Composition-based stats. Identities = 143/368 (38%), Positives = 218/368 (59%), Gaps = 43/368 (11%) Query: 1 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFE 60 M ++ RN ++Y G+RI++S+GTK+K++AQ+LHDK ELW+ E + P +E Sbjct: 1 MPIYLRNGVYYVDIRTESGRRIRQSVGTKNKKEAQKLHDKLTYELWQHEHFDEKPKRLWE 60 Query: 61 EACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 EA +RW++EK+DKKS+ D R+ L G+ L +S I V R+ Sbjct: 61 EAAVRWIKEKSDKKSIKDDICRLR-MLPKLRGVYLHHLSRDFIMDVVDRL---------- 109 Query: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRN 180 P S TK +++A+I++IL A+ +W W++K P +K+ Sbjct: 110 -------------------PCSNSTKNRYIALIRSILYKAQNEWGWIDKVPKLKLKKEAE 150 Query: 181 KRVRWLEKEEAKRLIDECPE-PLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPE 239 KR+RWL+ EEA++LI+ P+ +++ KF+ TGLR+ N+ L W+Q+D+ R+ AW+ P+ Sbjct: 151 KRIRWLKPEEAEQLINALPDDHWRAIAKFSFCTGLRQRNVFGLRWEQVDLNRKTAWIYPD 210 Query: 240 ESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSW 299 E+K+ R IGV LND A +VL +++G H +VF + + + + S W Sbjct: 211 EAKAGRPIGVPLNDVAIRVLSERMGIHKTYVFTNRE------------NKPITALSSRMW 258 Query: 300 LSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTE 359 RAGI +FR+HD+RHTWASWL+Q GVPL L+EMGGWE ++MV RYAHLA +HL Sbjct: 259 KRTLERAGISNFRWHDIRHTWASWLVQRGVPLVALKEMGGWERLDMVMRYAHLATDHLIA 318 Query: 360 HARKIDDI 367 HA +DD+ Sbjct: 319 HAEVLDDL 326 >UniRef50_Q31HE5 Tyrosine recombinase family protein n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31HE5_THICR Length = 341 Score = 300 bits (769), Expect = 6e-80, Method: Composition-based stats. Identities = 125/377 (33%), Positives = 197/377 (52%), Gaps = 41/377 (10%) Query: 1 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFE 60 MS++ RN IW+ + P GKRI+ S GT+ ++QA E K K++LWRV LG+ P + ++ Sbjct: 1 MSIYLRNNIWWTKFVAPDGKRIQRSTGTEQRQQALEFEAKLKSDLWRVHNLGEKPRLLWK 60 Query: 61 EACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 EA +R++ EK +K S ++ S ++ +F + + +I + + Sbjct: 61 EAVVRFMREKQNKDS-TNEVSIFKYLDRYFGHLYVDEIRRMHVDEIIQ------------ 107 Query: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRN 180 + VS T + L ++A+L A ++W+ P IK+ Sbjct: 108 --------------TRLKEGVSNATINRLLQKLRAVLNKAHKEWEVKCDPPYIKLLKEPK 153 Query: 181 KRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEE 240 KRVRWL + EA RLI+ PE + + AL TGLR+SN+ L+W+QID +R+ ++ ++ Sbjct: 154 KRVRWLAEPEALRLINALPEYIADMATLALETGLRESNVTLLKWEQIDFSQRIIYIEGDD 213 Query: 241 S-KSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSW 299 KS +A V L+DTA +V++ Q+GKH VF +R + ++ Sbjct: 214 ILKSEQAFVVPLSDTAVEVIKRQVGKHPTRVFTFR-------------GDPIRRANTKAF 260 Query: 300 LSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTE 359 + C GIEDFR+HDLRHTWA+W +Q G PL VLQE+GGW +MV+RYAH HL + Sbjct: 261 KNTCAELGIEDFRWHDLRHTWATWHVQRGTPLEVLQELGGWTDYKMVKRYAHFTHQHLKQ 320 Query: 360 HARKIDDIFGDNVPNMS 376 + + + Sbjct: 321 YVNRAPSGLATISATSA 337 >UniRef50_Q2LV83 Phage integrase family protein n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LV83_SYNAS Length = 364 Score = 297 bits (762), Expect = 4e-79, Method: Composition-based stats. Identities = 106/391 (27%), Positives = 182/391 (46%), Gaps = 51/391 (13%) Query: 1 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLP--DVT 58 M L++R +W+ S+S G++ + S T+D++ A + DK K ++ + LP Sbjct: 1 MGLYKRGTVWWMSFS-HNGEQFRRSTETEDRKLAIRIFDKLKGDIAEGKWFEKLPGDSYK 59 Query: 59 FEEACLRWLEEK----ADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRK 114 F++ +++ E S DKS + +F L +++ A I Sbjct: 60 FKDLMDKYMTEYSAVNKAASSYKRDKSIVTQLKSYFGEKYLTELTPAMISDY-------- 111 Query: 115 TKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIK 174 VS++T L + A R+W + PV K Sbjct: 112 ------------------KVKRRSDGVSSRTINYELITMSHAFNLAIREWGLANENPVSK 153 Query: 175 IPA--VRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRR 232 + V NK RWL EE L+ E P+ L+ ++ FA+ TGLR+S I++L+W Q+DM+RR Sbjct: 154 VKKDRVTNKIERWLTSEEETNLLKESPKWLQDIIIFAIHTGLRQSEILDLKWSQVDMKRR 213 Query: 233 VAWVNPEESKSNRAIGVALNDTACKVLRDQIGKH---HKWVFVHTKAAKRADGTSTPAVR 289 ++ E K+ + LN+TA VL+++ +VF +T ++ + Sbjct: 214 TVTIH--EQKNRCIDTLPLNETAMTVLKNRHNPELPLEGYVFPNTLGDRKGNRLLL---- 267 Query: 290 KMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRY 349 ++ A ++A I +FRFHDLRHT+A+ LI+ G L +Q++G W+++ MV+RY Sbjct: 268 -------KAFYVALKKANISNFRFHDLRHTFATRLIRKGADLYTVQKLGRWKTVTMVQRY 320 Query: 350 AHLAPNHLTEHARKIDDIFGDNVPNMSHSEI 380 AH L +DD+ + N+S S+ Sbjct: 321 AHHHTESLRAAIEMMDDVEKPIITNLSQSQK 351 >UniRef50_A1V8M7 Site-specific recombinase, phage integrase family n=22 Tax=root RepID=A1V8M7_BURMS Length = 369 Score = 297 bits (762), Expect = 4e-79, Method: Composition-based stats. Identities = 135/365 (36%), Positives = 212/365 (58%), Gaps = 23/365 (6%) Query: 1 MSLFRRNEI--WYASYSLPGG-KRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDV 57 MSL++RN WY + PGG ++ S GT +K AQEL+D+ K ELW KLG P Sbjct: 1 MSLYKRNNSPNWYYRLTPPGGGPVVQGSTGTSNKAHAQELYDRLKVELWNQAKLGHKPRY 60 Query: 58 TFEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKE 117 + +A +R++ ++ SL++ K+ + + H G+ L DI ++ + Sbjct: 61 LWNDAVVRYVGDREGLSSLETSKTHLRWLDPHLSGVALADIDRDRVDAI----------- 109 Query: 118 IWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPA 177 ++ + + + + P + T + + ++ A+L AA +W+WL++APV+K Sbjct: 110 AHAKRCEPRVVRTRNGPKPIGGTIGEGTVRRVIGVLMAVLHAAV-EWEWLDRAPVLKRRK 168 Query: 178 VRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVN 237 KRVRW+ +A+RL+ E P L + +F+L TGLR+SN+ LEW Q+D+ RRVAW++ Sbjct: 169 TTPKRVRWITPAQAERLLAELPAHLSDMARFSLETGLRRSNVTGLEWSQVDLARRVAWIH 228 Query: 238 PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKT 297 P+++K+ +AI V L+DTA VLR Q+ K AA+ + + + Sbjct: 229 PDQAKARKAITVPLSDTAVDVLRRQLSKRR--------AAEHIERVFVYRGSAIGQPNTA 280 Query: 298 SWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHL 357 +W A +RAGI DFR+HDLRHTWASW +Q G PL VL+E+GGWE++EMV+RYAHL+ +HL Sbjct: 281 AWRKALKRAGIRDFRWHDLRHTWASWHVQRGTPLQVLKELGGWETLEMVQRYAHLSADHL 340 Query: 358 TEHAR 362 + Sbjct: 341 ARWVQ 345 >UniRef50_Q1Q549 Similar to site-specific tyrosine recombinase n=2 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q549_9BACT Length = 351 Score = 295 bits (757), Expect = 1e-78, Method: Composition-based stats. Identities = 95/374 (25%), Positives = 169/374 (45%), Gaps = 50/374 (13%) Query: 4 FRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLG--DLPDVTFEE 61 ++R+ IW+ G++I+ SL TK+K+ A+ + K + EL + + TF++ Sbjct: 2 YKRDGIWWTCIRHR-GRKIQRSLETKNKKLAESIEAKLRTELIEGKYFDKYEGDLKTFKD 60 Query: 62 ACLRWLEEKADKKSL---DSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEI 118 R+++E A K SL S + + L F + L I+ K+ Sbjct: 61 LMERFMKEHAPKVSLNMQKSYTTSAKHLLSFFGDLSLLAITPKKVNDY------------ 108 Query: 119 WKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAV 178 + T K LAM+ A ++W+W+ P KI Sbjct: 109 --------------KVSRKNLGKKPATINKELAMLSKAFCLAVKEWEWIRDNPASKISKE 154 Query: 179 R--NKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWV 236 + N+R RWL +E KRL++ PE L ++ F L TGLR+ +++L W ++D+ R+V + Sbjct: 155 KEANERDRWLSDDEEKRLLENSPEWLSDIIVFDLHTGLRQDELLSLTWDRVDLFRKVIII 214 Query: 237 NPEESKSNRAIGVALNDTACKVLRD---QIGKHHKWVFVHTKAAKRADGTSTPAVRKMRI 293 +ESK+ + + LN + +L + +VF S+ + R Sbjct: 215 --QESKNGKPRTIPLNQISLDILMEKTKVRSLKGDFVFP-----------SSVMTKMNRR 261 Query: 294 DSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLA 353 + ++ A +A I++F FHD+RH +A+ L Q GV + + ++ G +I M +RYAH Sbjct: 262 NLVRAFDIAKEKASIQNFHFHDVRHCFATRLAQRGVDIYRISKLLGHLNITMTQRYAHHC 321 Query: 354 PNHLTEHARKIDDI 367 P L ++ + Sbjct: 322 PESLRGGIEVLEKV 335 >UniRef50_B5YIK4 Site specific recombinase n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YIK4_THEYD Length = 345 Score = 295 bits (755), Expect = 2e-78, Method: Composition-based stats. Identities = 103/373 (27%), Positives = 172/373 (46%), Gaps = 51/373 (13%) Query: 1 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFE 60 M L++R IW+ S ++ GK+ + S T D+++A E++ K EL K + ++F Sbjct: 1 MGLYKRGNIWWFSVTIK-GKQFRFSTKTTDRKKATEIYAKALLELDNPTKDVENQ-ISFG 58 Query: 61 EACL-RWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIW 119 E ++L + S S K + E F+ I + I+ I + Sbjct: 59 EFFENQYLPFSERQASHQSKKYYFKVIPEWFKKIPINQITTRDIELLQGDLL-------- 110 Query: 120 KQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWL----EKAPVIKI 175 K + + + +A IK LR A ++ +K Sbjct: 111 -------------------KGRTPASVNRIIATIKHSLRKAYEWELTEEETLKRVQRVKP 151 Query: 176 PAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAW 235 +R+R+L EE +LI+ LK ++ AL TG+RK I++L W QID++ Sbjct: 152 LKGEVQRLRFLSLEECHKLIEVAEPHLKPIIITALNTGMRKGEILSLTWSQIDLKHGFIH 211 Query: 236 VNPEESKSNRAIGVALNDTACKVLRDQ---IGKHHKWVFVHTKAAKRADGTSTPAVRKMR 292 + E++K+ + +NDT + RD +VF++ + KR Sbjct: 212 L--EKTKNGERRDIPMNDTLKILFRDLIKNRRLDSDYVFLNPETGKRL------------ 257 Query: 293 IDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHL 352 D K S+ +AC+RAGI DFRFHDLRHT+AS LI +GV L +QE+ G ++I+M +Y+HL Sbjct: 258 TDIKRSFRTACKRAGITDFRFHDLRHTFASHLIMNGVDLKTVQELLGHKTIKMTLKYSHL 317 Query: 353 APNHLTEHARKID 365 + H + ++ Sbjct: 318 SKAHKEKAVNTLN 330 >UniRef50_A8UUR8 Phage integrase family protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UUR8_9AQUI Length = 351 Score = 294 bits (754), Expect = 3e-78, Method: Composition-based stats. Identities = 101/378 (26%), Positives = 167/378 (44%), Gaps = 43/378 (11%) Query: 3 LFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLP-DVTFEE 61 L +R +++Y + G+R E +G K A+E+ ++ ++ + R E + TF + Sbjct: 8 LRKRGKVFYFEFMYK-GQRYYEKIGVVSKTVAKEIANEIRSRIIRGEYIPQKERKTTFSD 66 Query: 62 ACLRWLEEKADK-----KSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTK 116 A ++E K KS + + R E F +L IS + S + Sbjct: 67 AVRVYIEWYRKKSTAREKSKEENIRRARRLEEFFGSRKLSQISTFLVESYKKKRLEE--- 123 Query: 117 EIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIP 176 V QT L ++ +ILR A+ + + P I+ Sbjct: 124 -----------------------GVKPQTINMELNILGSILRRAKEAGLFDGELPKIEKF 160 Query: 177 A-VRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAW 235 +R+R+L + EA+RLI CPE K VV FAL TGLR I +L W+ +D +R V Sbjct: 161 RNADRERLRFLSEREAQRLISACPEWFKPVVIFALNTGLRAGEIFSLRWEDVDFERGVIT 220 Query: 236 VNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDS 295 V SKS + + +N T K+L+ K H ++F + + Sbjct: 221 VREASSKSGKVRKLPMNATVKKLLQGLERKEHGYIFTNRFGLP---------YKYEDKTY 271 Query: 296 KTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPN 355 + + +AC +AGI+DFRFHDLRHT+ASW+ + + +Q + G S + +RYAHL + Sbjct: 272 RRVFKTACEKAGIKDFRFHDLRHTFASWVAMNSKDIYAVQNLLGHSSPSVTKRYAHLTDD 331 Query: 356 HLTEHARKIDDIFGDNVP 373 +L + + + Sbjct: 332 YLRSVVESVPNFGSSSAS 349 >UniRef50_C6HV65 Putative phage integrase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HV65_9BACT Length = 337 Score = 293 bits (752), Expect = 5e-78, Method: Composition-based stats. Identities = 132/363 (36%), Positives = 210/363 (57%), Gaps = 43/363 (11%) Query: 3 LFRRNEI--WYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFE 60 LF+R + W+ S+++ G+R + S GT DK QA ELHD+ K+E WR L + P + ++ Sbjct: 2 LFKRKDSPIWWVSFTVR-GRRTRCSAGTTDKAQALELHDRWKSEAWREISLKEKPKLGWK 60 Query: 61 EACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 EA L+WLE K+ K ++ D++ + F ++G +L +I + +I S Sbjct: 61 EAALKWLEVKSAKATIHDDEAHLLFIQNFWKGKKLSEIGKEEIDSL-------------- 106 Query: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRN 180 + VS T + L++++AILR + + W+E P +++ Sbjct: 107 ------------KVKKKATGVSNATVNRMLSLVRAILRMSFK-LGWIESVPPVELMPEPK 153 Query: 181 KRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEE 240 KR+RWL KEEA +L+ PE + + +FAL TGLR+ NI+ LEW Q+D+ R+V W++ ++ Sbjct: 154 KRIRWLTKEEAAKLLSYLPEHQERIARFALLTGLRQGNILGLEWSQVDLVRKVLWIHADQ 213 Query: 241 SKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWL 300 +K +AIG+ L D A +LR+ G+H +WVF + ++ + +W Sbjct: 214 AKGRKAIGIPLPDAAVTLLRELSGQHPQWVFTYK-------------GNRINQVNTLAWR 260 Query: 301 SACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEH 360 A ++AGIE+FR+HDLRH WASW IQ G PL L+E+GGWES++MV RY+H+AP HL + Sbjct: 261 KALKKAGIENFRWHDLRHCWASWHIQDGTPLYALKELGGWESMDMVMRYSHMAPEHLAPY 320 Query: 361 ARK 363 +K Sbjct: 321 VQK 323 >UniRef50_A0YFT5 Phage integrase n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YFT5_9GAMM Length = 346 Score = 292 bits (747), Expect = 2e-77, Method: Composition-based stats. Identities = 119/368 (32%), Positives = 185/368 (50%), Gaps = 42/368 (11%) Query: 2 SLFRRNEI--WYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTF 59 L++R W+ LP G+R+ +S K A E KA+ ++ + G + D T+ Sbjct: 6 GLYQREGTPYWWVDLVLPDGRRVCQSTRLKCLNAANEFVIDLKADAYKRSREGIVHDKTW 65 Query: 60 EEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIW 119 +A +R+L E A KKSL +D+ ++ + L+ +S ++ + + Sbjct: 66 RQAVVRYLAENATKKSLQADRDNLKKLDAFVGDLLLRQVSMDSLWPFIHQ---------- 115 Query: 120 KQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVR 179 V+ T + L +++ I A +W WLE+ P I++ Sbjct: 116 ----------------RRDDGVTDATINRALEVVRRIFHLARDEWCWLERFPKIRMLKEP 159 Query: 180 NKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPE 239 +R+R+L + E RL++E P+ ++ VV+FA+ATG R I+ LEW ++D RRVAW++ Sbjct: 160 KRRIRFLRRPEVNRLLEELPDHMRPVVQFAVATGCRMGEILKLEWNRVDFDRRVAWLDHG 219 Query: 240 ESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSW 299 +K+ G+ LN+ A LR G+H +W F K + W Sbjct: 220 TTKNGDGRGIPLNNDAVLALRSLHGQHQRWCFTFR--------------GKPIKAIGSCW 265 Query: 300 LSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTE 359 A RA IE+FRFHDLRHTWASW + SG L L E+GGW+S EMV RYAHLAP HL+ Sbjct: 266 KRALERAQIENFRFHDLRHTWASWHVMSGTSLQELMELGGWKSYEMVLRYAHLAPEHLSS 325 Query: 360 HARKIDDI 367 A +I+ + Sbjct: 326 AAARIEQV 333 >UniRef50_Q9T1P3 Integrase n=4 Tax=root RepID=Q9T1P3_BPD3 Length = 369 Score = 290 bits (743), Expect = 6e-77, Method: Composition-based stats. Identities = 89/387 (22%), Positives = 166/387 (42%), Gaps = 42/387 (10%) Query: 4 FRRNEI--WYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEE 61 ++RN+ W+ S+ GK ++ S GT D A+ L + +A+ W+ +++G P TFEE Sbjct: 3 YKRNDSAYWWISFKSATGKLVRRSSGTADYSAAKALEQQERAKAWKEKEMGVNPPRTFEE 62 Query: 62 ACLRWLEE-KADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 + +L+ + ++S ++ RI+ E+F G + D+ I Sbjct: 63 VIIPYLQHARQHQRSYETTVHRIKPLREYFAGRVVNDLGGQDIRGY-------------- 108 Query: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIP-AVR 179 S T + LA + A + + +W PV Sbjct: 109 ------------GAHRLDAGASPATINRELAALSAAINHCNTELEWALPNPVKGRKMREA 156 Query: 180 NKRVRWLEKEEAKRLIDECPEP-----LKSVVKFALATGLRKSNIINLEWQQIDMQRRVA 234 R RWL + E + L L+ ++ A+ TG R+ ++ LEW+++D R+ Sbjct: 157 EGRDRWLTRAEVEALCRAARGQKFGPMLEDFIRLAVNTGCRREEMLGLEWRRVDFANRLI 216 Query: 235 WVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRID 294 ++ +K+ + + +N+ A L+ ++ + + A I Sbjct: 217 YLEASHTKAGKRRSIPINEGAMAALKRRMAFRSE-------TSPECPWVFARANGDRVIS 269 Query: 295 SKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAP 354 + AC+ A I DF HDLRHT A+WL+ +GVPL+ ++++ G ++ M RYAHLAP Sbjct: 270 LSAGFKQACQAAKIADFTIHDLRHTCAAWLVSAGVPLADVRDLLGHSTVAMTERYAHLAP 329 Query: 355 NHLTEHARKIDDIFGDNVPNMSHSEIM 381 + + +D + + H++ Sbjct: 330 ARVRDAVGVLDQVREGRISRSVHADNP 356 >UniRef50_Q47H88 Phage integrase n=1 Tax=Dechloromonas aromatica RCB RepID=Q47H88_DECAR Length = 338 Score = 290 bits (742), Expect = 8e-77, Method: Composition-based stats. Identities = 127/370 (34%), Positives = 206/370 (55%), Gaps = 43/370 (11%) Query: 1 MSLFRRNEI--WYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 MSLF+R + W+ + G++++ S GT DK +AQE HD+ KA++W +LG + Sbjct: 1 MSLFKRKDSSCWWVKI-IIDGRKVQRSTGTDDKIKAQEFHDRLKAQMWEQNRLGVKARRS 59 Query: 59 FEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEI 118 ++EA +RWLEE ++K + + DK ++ + + + L +I+ I S + K Sbjct: 60 WKEAVVRWLEETSEKATHNEDKRKLIWLDTYLGKLMLDEITLDVIDSVRAAKLKEAAKA- 118 Query: 119 WKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAV 178 T ++LA++++IL A +W+W++K P +++ Sbjct: 119 --------------------------TTNRYLALMRSILLRARDEWEWIDKVPKVRLFKE 152 Query: 179 RNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNP 238 R R L +E+A +L++E P+ + VV FALATGLR+SN++ LEW QI++++R AW++ Sbjct: 153 SASRERSLTREQAGKLLEELPQHQRDVVLFALATGLRQSNVLQLEWSQINLEQRHAWIHA 212 Query: 239 EESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTS 298 +SK+ R I + LN+ A VL Q GKH VF + + + + Sbjct: 213 WQSKNRRPISIPLNEAAYSVLIRQKGKHESRVFTFR-------------GKPLESANTRA 259 Query: 299 WLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLT 358 W A R+GI++FR+HDLRHTWA+W Q+G P LQ +GGW + MV RYAHLAP+HL Sbjct: 260 WRKALLRSGIDNFRWHDLRHTWATWQRQAGTPTHELQRLGGWRTGAMVERYAHLAPDHLA 319 Query: 359 EHARKIDDIF 368 E A +++ + Sbjct: 320 EAASRLNSVI 329 >UniRef50_D2TXV6 Phage integrase n=3 Tax=root RepID=D2TXV6_9ENTR Length = 341 Score = 286 bits (732), Expect = 1e-75, Method: Composition-based stats. Identities = 131/363 (36%), Positives = 197/363 (54%), Gaps = 40/363 (11%) Query: 2 SLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEE 61 S ++R EIW+ S++ P +RI++S T ++++A+EL WR EKLGD+ T++E Sbjct: 7 STYKRGEIWWYSFTTPNKQRIRKSAKTTNQQEAKELAALEYNSYWRNEKLGDVSFHTWQE 66 Query: 62 ACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQ 121 A L WL EK ++K + + + ++ +L DI++ I Sbjct: 67 AVLLWLNEKPERKENRNMLYGLRWLDQYLGKTKLIDINKYLIDEI--------------- 111 Query: 122 KVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNK 181 + V +T L I+ +L+ A + L+K P IK+ + Sbjct: 112 -----------KKTKQISGVKNRTVNAVLQQIRVVLKCAY-EHGLLDKIPPIKLLKEPTR 159 Query: 182 RVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEES 241 R+RWL + E KRL+ E PE LK +V FAL TGLR SNI NL+W Q+D+ RR AW++ +ES Sbjct: 160 RIRWLTEYEEKRLMVELPEHLKPIVNFALNTGLRMSNITNLKWSQVDINRRQAWIHADES 219 Query: 242 KSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLS 301 K+N+AIG+ LN A ++R+Q G H ++VF + +++ W Sbjct: 220 KTNQAIGIPLNQAALTIIREQQGHHREYVFTY-------------QGNRIKNAGAKGWRK 266 Query: 302 ACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHA 361 A RAG+ DF FHDLRHTWA+ I +G PL VLQE+GGW + VR+YAHL+ L +HA Sbjct: 267 AVYRAGLGDFHFHDLRHTWATRHIMAGTPLYVLQELGGWSKADTVRKYAHLSTQFLQQHA 326 Query: 362 RKI 364 +I Sbjct: 327 ERI 329 >UniRef50_B6ALQ5 Integrase n=1 Tax=Leptospirillum sp. Group II '5-way CG' RepID=B6ALQ5_9BACT Length = 367 Score = 286 bits (732), Expect = 1e-75, Method: Composition-based stats. Identities = 94/374 (25%), Positives = 149/374 (39%), Gaps = 49/374 (13%) Query: 2 SLFRR---NEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDV- 57 +F R + IW+ Y+ GK I+ +G K A+ + + +A++ + P V Sbjct: 9 GVFERPVDSGIWWVRYTWQ-GKEIRRKIGRKT--DAKNYYARVRAQILEGRYEPEKPRVV 65 Query: 58 TFEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKE 117 T ++E SL + +FW G + I A++ + Sbjct: 66 TLGAWLGEYMET-VTSVSLSQQRGYAKFWTNTLGGRPIASIKTAELERIQVSLRE----- 119 Query: 118 IWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKI-- 175 ++ T +H A +K A RD +++ PV + Sbjct: 120 --------------------AGKLAPSTINRHFAFLKHTFNIALRD-GLIKENPVKGVHF 158 Query: 176 PAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAW 235 R +L + + +L + V+ A+ TGLR+S NL W+ IDM RV Sbjct: 159 FKEPKGRTVFLSEADEAKLKESFSPEYWPYVELAIHTGLRQSEQFNLRWENIDMTSRVLT 218 Query: 236 VNPEESKSNRAIGVALNDTACKVLRDQIGKH---HKWVFVHTKAAKRADGTSTPAVRKMR 292 V SKS V LNDTA VLRD + WVF R Sbjct: 219 VPV--SKSGLTRHVPLNDTALAVLRDLKARQVILSPWVFPSP--------VDHTKPRDGN 268 Query: 293 IDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHL 352 K ++ A +AG+ +H LRHT+ S L+Q+GVPL+ +Q++ G + YAHL Sbjct: 269 AFYKKVFVPAIEKAGLSGVVWHTLRHTFCSRLVQAGVPLTTVQKLAGHKDYSTTLIYAHL 328 Query: 353 APNHLTEHARKIDD 366 +P+HL E + Sbjct: 329 SPDHLHEAVGILSG 342 >UniRef50_B7DTQ3 Integrase family protein n=2 Tax=Bacillales RepID=B7DTQ3_9BACL Length = 392 Score = 285 bits (730), Expect = 2e-75, Method: Composition-based stats. Identities = 77/403 (19%), Positives = 140/403 (34%), Gaps = 52/403 (12%) Query: 3 LFRRNEIW----YASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 + +R W Y Y G KR K G K KR A+ ++ + + T Sbjct: 15 IRKRGNSWSVVVYLGYDEQGKKRYKWHGGFKTKRDAERFLATLVEQVHDGTYV-EPSKKT 73 Query: 59 FEEACLRWLEEKADKKSLDSDKSRI----EFWLEHFEGIRLKDISEAKIYSAVSRMHNRK 114 WL++K K + +S + + + L + + I + + Sbjct: 74 VGAYLREWLDDKRTKVRPGTLRSYVWLVEHHIIPRIGQLELAKLRPSHIQKLYTDLQT-- 131 Query: 115 TKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAP--V 172 + +S ++ ++ L A + W + + Sbjct: 132 ----------------------GDEHISKRSVLHAHRILHQALDRAVK-WGLITRNVTDA 168 Query: 173 IKIPAVRNKRVRWLEKEEAKRLIDECPE-PLKSVVKFALATGLRKSNIINLEWQQIDMQR 231 ++ P + +R E+ + + +TG+R ++ L W+ +D+Q Sbjct: 169 VEPPRPARQEMRVWTDEQLDAFLQAARKSRYYVAFVLLSSTGMRVGEVLALRWEDVDLQA 228 Query: 232 RVAWVNPEESKSNR------------AIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKR 279 + V S + + +AL +LR + + A + Sbjct: 229 GLVRVVRSYSYTGKGYRIEEPKTESGRRSIALPPAVVDLLRKHKTEQAARRLMVGSAWED 288 Query: 280 ADGTSTPAVRKM--RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEM 337 D A K + + +TS+ R G+ R HDLRHT A+ L+Q GV V+QE Sbjct: 289 NDLVICTAFGKPILQHNLRTSFHRIIERTGLPRIRLHDLRHTHATILLQRGVHPKVVQER 348 Query: 338 GGWESIE-MVRRYAHLAPNHLTEHARKIDDIFGDNVPNMSHSE 379 G I + Y+H+ P AR IDD+F + +S E Sbjct: 349 LGHSDITLTLNTYSHVVPGLQEAAARSIDDLFSPSSKRISTHE 391 >UniRef50_Q45YI6 Prophage integrase n=5 Tax=root RepID=Q45YI6_9CAUD Length = 441 Score = 283 bits (726), Expect = 5e-75, Method: Composition-based stats. Identities = 130/385 (33%), Positives = 210/385 (54%), Gaps = 39/385 (10%) Query: 1 MSLFRR--NEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 M ++R N W+ S+ G RI++S GT D+R A+EL K ++ WR +KLG+ P VT Sbjct: 49 MRFYKRQKNGPWWFDLSI-DGSRIRQSSGTSDRRAAEELAAKVASDYWRQKKLGERPAVT 107 Query: 59 FEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEI 118 ++ A + WL++ ++SL++ K R+ + + +G +++I +I + + Sbjct: 108 WDAAVVHWLKQNQHQRSLETTKQRLRWLTDQLKGENVRNIDRERIQALI----------- 156 Query: 119 WKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAV 178 + K Y PV+ T +H+A + IL + W++ P I+ Sbjct: 157 ----------ETKAAEKYRGSPVAGATVNRHMAALSVILHHCHAE-GWIDAVPPIRKLRE 205 Query: 179 RNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNP 238 + R+ WL + +A+RL++E P L+ + +FALATGLR+SN+ LEW Q+D +R +AW++ Sbjct: 206 NSARLTWLTRAQAQRLLEELPTHLRQMARFALATGLRESNVRLLEWAQVDRERALAWIHA 265 Query: 239 EESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTS 298 +++K+ + I V LN+ A VLR+Q G+H ++VFV+ A + + Sbjct: 266 DQAKAGKVISVPLNEDALGVLREQQGQHKRYVFVYKGA-------------PIGRIYNHA 312 Query: 299 WLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLT 358 W AC RAG+ RFHDLRHTWASW +Q+G PL +LQ++GGW S +MV RYAHL +H+ Sbjct: 313 WQKACVRAGLSGLRFHDLRHTWASWHVQAGTPLPILQQLGGWASYQMVLRYAHLGRDHVA 372 Query: 359 EHARKIDDIFGDNVPNMSHSEIMED 383 +A I E D Sbjct: 373 AYADNIGT-LRHKSGTPPEIEKGSD 396 >UniRef50_C9MEM4 Prophage integrase n=1 Tax=Haemophilus influenzae NT127 RepID=C9MEM4_HAEIN Length = 341 Score = 283 bits (725), Expect = 6e-75, Method: Composition-based stats. Identities = 112/367 (30%), Positives = 190/367 (51%), Gaps = 39/367 (10%) Query: 1 MSLFR-RNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTF 59 M + + +N +W ++ P G+R++ S T DK+ AQ LHDK K E W+V++L P+ T Sbjct: 1 MPIRKNKNGVWQIDFTTPSGERVRCSSKTTDKKLAQHLHDKLKHEAWQVDQLNKKPEKTV 60 Query: 60 EEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIW 119 E+A + L++ KK + ++W + L ++ I +A+ Sbjct: 61 EQALILLLKDAEHKKDKLTKIQHAKYWRDEIGNKLLSSLTSEDIQNAIP----------- 109 Query: 120 KQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVR 179 V K +S T+ ++ + I + A + W++ P I + Sbjct: 110 ------------THVVRTGKILSPATQNRYRSSIMRAINLA-KQAGWIDVVPYIAKNSEP 156 Query: 180 NKRVRWLEKEEAKRLIDECP-EPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNP 238 KR+RW+ ++EA+RL+D +K V +FAL TG R + I+++ W +I+ ++A V Sbjct: 157 KKRIRWITEKEAERLLDSLNLNWMKDVCQFALLTGARMTEILSMTWDKINFANKMAIVTG 216 Query: 239 EESKSNRAIGVALNDTACKVLRDQIGKH-HKWVFVHTKAAKRADGTSTPAVRKMRIDSKT 297 + +KS R + L+D A ++++++ +VF R D + + Sbjct: 217 DIAKSGRGRSLPLSDDAINLIKERMKYQVSPYVFHSGTGKLRDDIS------------RR 264 Query: 298 SWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHL 357 + A +RA I++FRFHDLRHTWASW IQ G PL VL+E+GGWE+IEMV++YAHL +HL Sbjct: 265 DFKRALQRANIKNFRFHDLRHTWASWHIQRGTPLMVLKELGGWETIEMVQKYAHLNADHL 324 Query: 358 TEHARKI 364 + ++ Sbjct: 325 LSYVNQV 331 >UniRef50_C6HUB8 Phage integrase family protein n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HUB8_9BACT Length = 347 Score = 283 bits (724), Expect = 9e-75, Method: Composition-based stats. Identities = 104/385 (27%), Positives = 175/385 (45%), Gaps = 52/385 (13%) Query: 1 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLP--DVT 58 M L++R +W+ +S+ GK+I+ S GT +++ A +++ K E+ + LP + T Sbjct: 1 MGLYKRGALWWMRFSVQ-GKQIRRSTGTSERKLADKVYKKVLGEIAEGDWFDRLPGEEKT 59 Query: 59 FEEACLRWLEEKADK----KSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRK 114 E ++LEE + KS DK+ L+ F + L +I +I+ + Sbjct: 60 LSELFDKYLEEHSKPNKSSKSYIRDKAISLRMLKEFGDVTLIEIGTEQIFDYKKKRREE- 118 Query: 115 TKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIK 174 ++ + K +A ++ A W WLE PV + Sbjct: 119 -------------------------NLAPASLNKEIAFLRHAFEMAV-LWGWLEVNPVSR 152 Query: 175 IP--AVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRR 232 IP V+N+ RWL EE +RL+ CPE L+ +V FAL TG R++ +++L W Q+D R+ Sbjct: 153 IPREKVKNRMERWLTGEEEERLLKACPEWLRDMVIFALNTGFRQNEMLSLTWNQVDWDRK 212 Query: 233 VAWVNPEESKSNRAIGVALNDTACKVLRD---QIGKHHKWVFVHTKAAKRADGTSTPAVR 289 + K+N V +N+ A VL+ VF+ + Sbjct: 213 AIL--FWDQKNNGRDTVPVNEKAIDVLKRIGKVKSLSSGHVFLTSNGTP----------- 259 Query: 290 KMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRY 349 + + S+ A +A I +FR+HDLRHT+A+ L+ +GV L +Q +G W S+ MV RY Sbjct: 260 FIARNVVRSFSLALEKAKITNFRWHDLRHTFATRLVHAGVDLYTVQRLGRWRSLSMVMRY 319 Query: 350 AHLAPNHLTEHARKIDDIFGDNVPN 374 AH L ++ + N+ Sbjct: 320 AHHNLESLRTGMEAVNRLASTNLAQ 344 >UniRef50_Q2RHJ2 Phage integrase n=3 Tax=Firmicutes RepID=Q2RHJ2_MOOTA Length = 390 Score = 281 bits (720), Expect = 3e-74, Method: Composition-based stats. Identities = 79/394 (20%), Positives = 149/394 (37%), Gaps = 55/394 (13%) Query: 2 SLFRR-NEIWYASYSL---PGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDV 57 ++++R + W A ++ GK+ + +L K K++ E + + + + + Sbjct: 11 TVYQRPDGRWTAQITVGIDHEGKQRRLTLYGKSKKEVLEKLTQALYQQQNGGFI-EPSKI 69 Query: 58 TFEEACLRWLEEKADK----KSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMHN 112 T E+ RWL + A + +S ++ + + I LK + A I + Sbjct: 70 TVEQWLNRWLTDYAKPHLRQSTWESYETVLRLHVIPTLGSIPLKKLQPADIQRLYA---- 125 Query: 113 RKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAP- 171 +S ++ + A R+ L + P Sbjct: 126 ----------------------SKLESGLSPTRVRYIHVVLHEAMSQA-RESGLLLQNPT 162 Query: 172 -VIKIPAVRNKRVRWLEKEEAKRLIDECP-EPLKSVVKFALATGLRKSNIINLEWQQIDM 229 K P K+V+ L E+ KR ++ +PL AL TGLR+ I+ L WQ +D+ Sbjct: 163 EAAKPPRHPKKKVQPLNPEQVKRFLETAKQDPLYPAFLLALGTGLRRGEILGLRWQDLDL 222 Query: 230 QRRVAWVN-----------PEESKSNRAIG-VALNDTACKVLRDQIGKHHKWVFVHTKAA 277 Q+ + V EE K+ ++ + L + L+ ++ + Sbjct: 223 QKGILQVRQSLIRTREGLKFEEPKTEKSRRQIPLPPSVVAALKRHKAWVNQNKLILGPDY 282 Query: 278 KRADGTSTPAVRKMR--IDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQ 335 + D + R + +AG+ R HDLRHT A+ L+ GV V+Q Sbjct: 283 EDHDLVFPVENGRPRDPKGFAEYFNRLLDKAGLPHIRLHDLRHTHATLLLLEGVHPKVVQ 342 Query: 336 EMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIF 368 E G ++ + Y+H+ P + A +ID + Sbjct: 343 ERLGHSTVSITLDIYSHILPGLQEKAAERIDGLL 376 >UniRef50_A8MGP9 Integrase family protein n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MGP9_ALKOO Length = 369 Score = 280 bits (718), Expect = 4e-74, Method: Composition-based stats. Identities = 78/393 (19%), Positives = 159/393 (40%), Gaps = 53/393 (13%) Query: 2 SLFRRNEIWYASYS--LPGGKRIKESL-GTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 S+ ++N WY GKR ++ + G +++A++ + +L + ++T Sbjct: 4 SIVKKNHKWYIVVDSIDENGKRKRKWISGFNTQKEAEKKLPEILQQLNTNTFVDTN-NIT 62 Query: 59 FEEACLRWLEEKADKK----SLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRK 114 + WLE+ A + D E ++L+ I I V++++N Sbjct: 63 LRDYMQLWLEDYAKPNVAPTTYDKYTYAANKVSEILGNMKLQQIKPIHIQQLVNKLNNSD 122 Query: 115 TKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIK 174 V+ T + ++ + A + W++++ P + Sbjct: 123 --------------------------VTPSTVLSYYRVLNTAINQAVK-WQFIQYNPCVA 155 Query: 175 I--PAVRNKRVRWLEKEEAKRLIDECPEP-LKSVVKFALATGLRKSNIINLEWQQIDMQR 231 + P ++ L+++E + L+D+ + L V+ AL GLR+ I+ L+W+ ID Sbjct: 156 VTPPRNTKNKMMILDQDEIQILLDKSKDHVLYPVIVLALLCGLRRGEILGLQWENIDFFS 215 Query: 232 RVAWVN-----------PEESKSNR-AIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKR 279 V + +E+K++ V ++ +VL+ + + ++ + Sbjct: 216 GVIHLENNLVMANNESILKETKTSTGRRAVDISSNVVEVLKKVKKQKMSYKLLYGSSYHD 275 Query: 280 ADGTSTPAVRKM--RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEM 337 ++ T + ++ A + RFHDLRHT AS L++SG+ V+QE Sbjct: 276 SNFVCTWEDGRPFRPDYIPKAFAKILVSANLPKIRFHDLRHTHASILLKSGIHPKVVQER 335 Query: 338 GGWESIEMV-RRYAHLAPNHLTEHARKIDDIFG 369 G SI + Y+HL P+ A K+ +F Sbjct: 336 LGHSSISITLDTYSHLVPSLQKSAAEKMATMFS 368 >UniRef50_A8UVD2 Phage integrase family protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UVD2_9AQUI Length = 361 Score = 280 bits (718), Expect = 5e-74, Method: Composition-based stats. Identities = 100/374 (26%), Positives = 165/374 (44%), Gaps = 53/374 (14%) Query: 11 YASYSLPGGKRIKESLGTKDK---RQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRWL 67 + ++ GK + LG ++ A+ + K + ++ + L F E ++ Sbjct: 25 WFRFTYR-GKTYTKRLGRVNELPLTSAKHIAGKLRTQIIENQYLEKKEVPLFSEVAEKYF 83 Query: 68 EEKADKKSLDSDKSR------IEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQ 121 E +++ S ++ ++ +E F L SE I S Sbjct: 84 EWYKTERANASRRTIRETERRVKKLVEVFGDKTLDYFSEFLIDSY--------------- 128 Query: 122 KVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWK-WLEKAPVIKIPAVRN 180 + V T + L +++AILR ++W + P IK V + Sbjct: 129 -----------KQDRIKEGVKPSTVNRELNILRAILRK-VKEWGMYSGDLPRIKTYKVDD 176 Query: 181 KRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEE 240 +RVR+L EE K LID CP+ K VVKFA TGLR S + +L W +++ V + Sbjct: 177 ERVRYLSPEELKALIDACPDWFKPVVKFACLTGLRASELFSLTWDMVNLSEGYITVPAKY 236 Query: 241 SKSNRAIGVALNDTACKVLRDQIGKHHK------WVFVHTKAAKRADGTSTPAVRKMRID 294 SK+ + L+ A +VLR+ + + +VF + + Sbjct: 237 SKTKETKRIPLHPKALEVLREVKARQEERWIDYGYVFTNRMGKPYS---------VEGQG 287 Query: 295 SKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAP 354 K + +AC +AGI DFRFHDLRHT+AS+L+ SGV +QE+ S M +RYAHL+P Sbjct: 288 YKRVFKTACEKAGIRDFRFHDLRHTFASYLVMSGVDFYTVQELMRHSSPRMTKRYAHLSP 347 Query: 355 NHLTEHARKIDDIF 368 H+ + K+ ++F Sbjct: 348 EHIRKELEKVGEVF 361 >UniRef50_B7DTD1 Integrase family protein n=2 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DTD1_9BACL Length = 379 Score = 280 bits (716), Expect = 8e-74, Method: Composition-based stats. Identities = 78/394 (19%), Positives = 143/394 (36%), Gaps = 54/394 (13%) Query: 3 LFRRNEIWYASY---SLPGGKRIKESL-GTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 + +R W GKR ++ G K++A++ + E+ + + D T Sbjct: 5 VRKRGNKWCFVIDVGRDENGKRKQKWFSGYATKKEAEKAMAAKLQEIVSGVYVAENND-T 63 Query: 59 FEEACLRWLEEKADKKSLDSDKSR----IEFWLEHFEGIRLKDISEAKIYSAVSRMHNRK 114 E WLE+K + + + + H GI L D+ + + ++ + Sbjct: 64 VETYLRNWLEDKRSQVRPSTYRGYEWLVRVHIIPHLGGIELSDLRPQHLQALYRKLQS-- 121 Query: 115 TKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV-- 172 KP+S +T ++ L A + W + + Sbjct: 122 ----------------------LDKPLSNRTILHIHLLLHEALDRAVK-WGMVARNVADA 158 Query: 173 IKIPAVRNKRVRWLEKEEAKRLI---DECPEPLKSVVKFALATGLRKSNIINLEWQQIDM 229 + P +R E+ + + +E + A+ TG+RK I+ L W +ID Sbjct: 159 VDPPRPEVRRSIVWTPEDVRAFLSANEEAEARYYAAFVLAVMTGMRKGEILGLRWSEIDW 218 Query: 230 QRRVAWVNPEES-----------KSNRAI-GVALNDTACKVLRDQIGKHHKWVFVHTKAA 277 V +N + K++R+ VAL+ LR + ++ Sbjct: 219 DSAVVRINQTLTWTKQGPILQEPKTDRSRRSVALSPETIVALRRHHALQAQERLLYGTEY 278 Query: 278 KRADGTSTPAVRKM--RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQ 335 K D + +W A +RA + RFHDLRHT AS L+ GV ++ Sbjct: 279 KDHDLVFARPNGEPLHPRTLDNAWYRALKRANVPRIRFHDLRHTHASLLLAQGVHPKIVS 338 Query: 336 EMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIF 368 E G +I + Y+H+ P + A + D++ Sbjct: 339 ERLGHSTINITLDTYSHVLPGLQKQVADRFDEVI 372 >UniRef50_UPI0001A444C2 Tyrosine recombinase xerD n=1 Tax=Pectobacterium carotovorum subsp. brasiliensis PBR1692 RepID=UPI0001A444C2 Length = 348 Score = 278 bits (713), Expect = 2e-73, Method: Composition-based stats. Identities = 121/360 (33%), Positives = 191/360 (53%), Gaps = 39/360 (10%) Query: 1 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFE 60 M ++RR + ++ S P G+RI+ S GT ++ +AQE HDK K E+W+V ++G + D TFE Sbjct: 1 MPIYRRGKTYWVDISTPDGERIRRSAGTTERAKAQEYHDKLKHEVWQVARIGKIADRTFE 60 Query: 61 EACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 E + L + D+ ++ + +WL F+G + IS +I + + K + Sbjct: 61 ELIILALRDAEDQSCFENKQIYARYWLTVFDGRIISSISGEEITNKLPTHSTAKNCK--- 117 Query: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRN 180 +S T+ ++ A I L A + W+ P + Sbjct: 118 --------------------LSNATRNRYRAFIIRALSLAVKS-GWIRNMPYTSMQREPK 156 Query: 181 KRVRWLEKEEAKRLIDECP-EPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPE 239 RVRW+EK +A+ LI+ + +K VV FAL TG RK I +L+W +++ RR+A V + Sbjct: 157 VRVRWIEKSQARALIESLRLDWMKRVVSFALLTGARKGEIFSLKWDSVNLSRRIAIVTAD 216 Query: 240 ESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSW 299 +KS RA + LND A K++ G+ +VF + ++ ++T + Sbjct: 217 NAKSGRARPLPLNDDAVKIINA-CGRDSDYVF-------------SANGVRIVEINRTDF 262 Query: 300 LSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTE 359 +A R +GI DFRFHDLRHTWASW +Q+G PL L+E+GGWE +EMV +YAHL+ HL + Sbjct: 263 CNALRISGIADFRFHDLRHTWASWHVQNGTPLMTLKELGGWEKLEMVNKYAHLSTEHLRQ 322 >UniRef50_C6MS46 Integrase family protein n=1 Tax=Geobacter sp. M18 RepID=C6MS46_9DELT Length = 356 Score = 278 bits (711), Expect = 3e-73, Method: Composition-based stats. Identities = 95/378 (25%), Positives = 169/378 (44%), Gaps = 50/378 (13%) Query: 9 IWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVE--KLGDLPDVTFEEACLRW 66 + L G S + K A++ + +A + K + T E ++ Sbjct: 15 TYRVLVRLKGYPPQ--SATFERKTDAKKWAQQTEAAIREGRHFKTREAKKHTVAEMVDKY 72 Query: 67 LEEK--ADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQ 124 ++ KS D+ + ++ +W + L D++ A I ++ KTK Sbjct: 73 VKTVLPTKPKSKDTQEGQLLWWKDEIGLYTLADVTPAMIGECRDKLLAGKTK-------- 124 Query: 125 AAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKI--PAVRNKR 182 S T +++A + A +W W+E +P+ K+ P R Sbjct: 125 ------------GGGLRSPATTVRYMAALSHAFSVAVNEWGWVEDSPMRKVKKPKEPRGR 172 Query: 183 VRWLEKEEAKRLIDE----CPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNP 238 VR+L +E RL++ C L VV AL+TG+R S I+NL+W+ ID++R+ ++ Sbjct: 173 VRFLTDDERNRLLEAAKRSCNNCLYPVVLLALSTGMRFSEIMNLKWKDIDLKRKCLILH- 231 Query: 239 EESKSNRAIGVALNDTACKVLRDQ---IGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDS 295 ++K+ V + + A VL ++ + VF + + M + Sbjct: 232 -DTKNGERRNVPVVNLAHSVLTERSKVRRLGTELVFP------------SISDPTMPSNL 278 Query: 296 KTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPN 355 + SW +A R A +EDFRFHDLRH+ AS+L +G L+ + E+ G +++ MV+RYAHL+ Sbjct: 279 RKSWAAAVRDANLEDFRFHDLRHSAASYLAMNGATLAEIAEVLGHKTLAMVKRYAHLSEQ 338 Query: 356 HLTEHARKI-DDIFGDNV 372 H + + + IFG + Sbjct: 339 HTSRVVASMNEKIFGGTL 356 >UniRef50_A1K6M5 Site-specific recombinase, phage integrase family n=1 Tax=Azoarcus sp. BH72 RepID=A1K6M5_AZOSB Length = 358 Score = 275 bits (704), Expect = 2e-72, Method: Composition-based stats. Identities = 94/383 (24%), Positives = 154/383 (40%), Gaps = 45/383 (11%) Query: 5 RRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACL 64 + + L G E+ A+ + + + + G T E Sbjct: 10 KHGTTYKVQIRLKGYP--AETATFDRLSDARTWAAQTETAIKAGKHFGVAKRRTLHELAE 67 Query: 65 RWLEEKADK-KSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKV 123 ++ + AD KS ++ + + +W + F L D+S A I R+ R T Sbjct: 68 KYEQAVADSLKSFEARRGHLAYWRQAFGSSALADVSPALIAEHRDRLTKRTT-------- 119 Query: 124 QAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPA--VRNK 181 E VS T +++A + A+ A ++ +W+E PV ++ Sbjct: 120 -------------ERGTVSLATVNRYIATLSALFTFAVKELQWVEANPVERVRKFGESPG 166 Query: 182 RVRWLEKEEAKRLIDECPE----PLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVN 237 RVR+L +E L+ C E L V AL+TG R++ I L WQQ+D RR + Sbjct: 167 RVRYLSDQERAALLTACRESRNPYLYPAVVLALSTGARQAEITTLRWQQVDFARRTIVLR 226 Query: 238 PEESKSNRAIGVALNDTACKVLRDQ---IGKHHKWVFVHTKAAKRADGTSTPAVRKMRID 294 E+K+ + L A +LRD VF + + Sbjct: 227 EGETKNGAGRVLPLTGEALDLLRDLAKVRDIRDDRVFP------------VASTTRAFNS 274 Query: 295 SKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAP 354 K +W A +RAGI DFR+HDLRHT AS+L +G+ + ++ G ++++M RY+HL+P Sbjct: 275 IKGAWDGAVKRAGISDFRWHDLRHTAASYLTMAGIGSMEVAKVLGHKTLQMTARYSHLSP 334 Query: 355 NHLTEHARKIDDIFGDNVPNMSH 377 E + G S Sbjct: 335 ERTVELGDVLTKRLGLTSKKDSA 357 >UniRef50_B0USU3 Phage integrase family protein n=6 Tax=Pasteurellaceae RepID=B0USU3_HAES2 Length = 351 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 128/386 (33%), Positives = 209/386 (54%), Gaps = 41/386 (10%) Query: 1 MSLFRR--NEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 MS++RR + W+ + P GKRI+ S GT K++AQ HD+ KAE W++++L + P+ Sbjct: 1 MSIYRRTKDGPWWVDITTPSGKRIRRSAGTTVKKEAQHYHDQLKAETWKIDRLNEKPEYI 60 Query: 59 FEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEI 118 FEEA L ++ K + K ++W E F+G L ++ +I + + Sbjct: 61 FEEALLLYVRSAEGLKDTSTKKRHAKYWREKFQGRVLSSLTTQEILNHIP---------- 110 Query: 119 WKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAV 178 + KP++ TK K++ I IL A + ++K P + A Sbjct: 111 -------------TRNMNTNKPLTNSTKNKYIQSILRILNLAHQA-GLVDKVPHLPKNAE 156 Query: 179 RNKRVRWLEKEEAKRLIDECP-EPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVN 237 RVRW+ KE+AK L+ + + ++++ FAL TG R++ I+ + W +ID R+VA V Sbjct: 157 PPIRVRWITKEQAKDLLAKLNSDWMRAICAFALMTGARRTEILTMTWDKIDFVRKVAIVT 216 Query: 238 PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKT 297 + +KS +A + L+D A +L+ GKH K+VFV + K D + Sbjct: 217 NDVAKSGKARSLLLSDEAILLLKSLRGKHAKYVFVGRENNKLNDIN------------RK 264 Query: 298 SWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHL 357 ++ +A R+ + DF FHDLRHTWASW +Q+G PL L+E+GGWE++EMV++YAHL +HL Sbjct: 265 AFNAAARKCFLLDFHFHDLRHTWASWHVQAGTPLFTLKELGGWETLEMVKKYAHLNADHL 324 Query: 358 TEHARK--IDDIFGDNVPNMSHSEIM 381 EHA K + F +++H +++ Sbjct: 325 LEHANKVEFNGTFTAQSKSVTHLKLI 350 >UniRef50_C3L682 Prophage LambdaBa04, site-specific recombinase, phage integrase family n=10 Tax=Bacillus anthracis RepID=C3L682_BACAC Length = 374 Score = 274 bits (701), Expect = 4e-72, Method: Composition-based stats. Identities = 72/397 (18%), Positives = 144/397 (36%), Gaps = 58/397 (14%) Query: 4 FRRNEIWYASYSL----PGGKRIKESL-GTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 +R E W + + GKR +++ G K K++A+ ++ + + D + T Sbjct: 6 RKRGEKWSFTIDIGKDPITGKRKQKTASGFKTKKEAERACNELIHQFNTGSLVDDK-NFT 64 Query: 59 FEEACLRWLEEKADKKSLDSDKSRIEF-----WLEHFEGIRLKDISEAKIYSAVSRMHNR 113 E WLE A ++ ++ + + + +LKD+ V + + Sbjct: 65 LSEYLQEWLENTAKQRVRETTFTNYKRAINSRIIPVLGSHKLKDLKPLHGQRFVKSLIDE 124 Query: 114 KTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV- 172 +S ++K L A R W+ L K P Sbjct: 125 --------------------------GLSPAYIEYIFIVLKGSLEDAVR-WELLFKNPFQ 157 Query: 173 -IKIPAVRNKRVRWLEKEEAKRLIDECPEP---LKSVVKFALATGLRKSNIINLEWQQID 228 ++IP R EE K+ ++ + AL TG+R+ I+ L+W+ D Sbjct: 158 HVEIPRPRKVVNSTWSIEETKKFLNRTKFENVIYYHLFLLALNTGMRRGEILGLKWKNFD 217 Query: 229 MQRRVAWV-----------NPEESKS-NRAIGVALNDTACKVLRDQIGKHHKWVFVHTKA 276 + V E K+ ++++ CK + K +++ + ++ Sbjct: 218 LNEGKISVTETLIYDENGFRFTEPKTHGSKRLISIDQNLCKEFKSYKAKQNEFKLLFGQS 277 Query: 277 AKRADGTSTPAVRKM--RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVL 334 + D + T++ ++A + RFHDLRHT A+ L++ G+ ++ Sbjct: 278 YEDNDLVFAKETGQPILPRTMTTTFNQFIKKADVPQIRFHDLRHTHATILLKLGINPKIV 337 Query: 335 QEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIFGD 370 E G SI+ Y+H+ + K+ + Sbjct: 338 SERLGHSSIKTTLDTYSHVTIDMQESAVLKLSEALKS 374 >UniRef50_Q1AUQ4 Phage integrase n=3 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AUQ4_RUBXD Length = 379 Score = 274 bits (701), Expect = 5e-72, Method: Composition-based stats. Identities = 71/397 (17%), Positives = 144/397 (36%), Gaps = 61/397 (15%) Query: 4 FRRNEIW---YASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFE 60 R+N W Y Y+ G R ++++ K + + + +K ++ D ++ Sbjct: 13 RRKNGGWMGQYVVYTAEG--RKRKTVYGKTRAEVAKKLNKALSDREDGLFF-DAGNLKVG 69 Query: 61 EACLRWLEEKAD----KKSLDSDK-SRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKT 115 E RWL + + ++L + K I+LK ++ A + + Sbjct: 70 EYMDRWLRDSVEGNVGPRTLANYKLQVRRHIKPVLGEIQLKTLTPAHVQGLYRQ------ 123 Query: 116 KEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAP--VI 173 ++ + A++ L A R W + + + Sbjct: 124 --------------------KLDAGLAPSSVRYIHAVLHRALTQALR-WGLVPRNVSEAV 162 Query: 174 KIPAVRNKRVRWLEKEEAKRLIDECP-EPLKSVVKFALATGLRKSNIINLEWQQIDMQRR 232 +P + ++ V L EEA++ +D + +++ A+ TG+R+ ++ L W ID+ + Sbjct: 163 DLPKLVSEEVDALTPEEARKFLDAARGDRFEALYVVAVMTGMRRGELLGLRWSDIDLGQN 222 Query: 233 ---VAWV-------------NPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKA 276 V K + + L A + L+ + + Sbjct: 223 APATLRVGRQLQRMRDGSGLKFVAPKGGKGRTIRLPSRAVEALKAHRARQAEERLKAGPL 282 Query: 277 AKRADGTSTPAVRKM---RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSV 333 + V + S+ ++AG+ D RFHDLRHT A+ L+ GV Sbjct: 283 YRDEGLVFASEVGTPLEPSNIDRRSFKPLLKKAGLPDIRFHDLRHTCATVLLSQGVNPKF 342 Query: 334 LQEMGGWESIEMVR-RYAHLAPNHLTEHARKIDDIFG 369 +QE+ G I++ Y+H P+ + A ++ G Sbjct: 343 VQELLGHADIKLTLGTYSHFLPSMGDQTANAMESALG 379 >UniRef50_D2LSV7 Integrase family protein n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LSV7_BACS4 Length = 391 Score = 273 bits (699), Expect = 6e-72, Method: Composition-based stats. Identities = 81/401 (20%), Positives = 149/401 (37%), Gaps = 52/401 (12%) Query: 7 NEIWYASYS---LPGGKRI--KESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEE 61 N W S GKRI ++++ K+K +A++ + E+ E + D + F++ Sbjct: 10 NNRWRLEVSLGVDQDGKRIKKRKTITAKNKTEAKKRLAEFVTEIEAGEYI-DPSKMKFKD 68 Query: 62 ACLRWLEEKADK----KSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMHNRKTK 116 W + K K+L++ KS I + + F +L + I + + + + Sbjct: 69 FVKEWETKYGMKHLGAKTLETYKSIINNYLIPTFGNKKLDEFKPINIINYLDCLGEDNAR 128 Query: 117 EIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IK 174 + + +S+ + H +++ I A ++W ++ PV +K Sbjct: 129 K-----------------DGKEGGLSSSSIKYHYRVLRNIFSRA-KEWIIIKNNPVESVK 170 Query: 175 IPAVRNKRVRWLEKEEAKRLIDECPE---PLKSVVKFALATGLRKSNIINLEWQQIDMQR 231 P V ++ K+E L++ K +V AL GLR+ I+ L+W ID+ Sbjct: 171 PPKVTQEKTSVYTKDEVIELLELLKNEPIHQKLMVTAALMAGLRRGEILGLQWDDIDLDA 230 Query: 232 RVAWVNPEE------------SKSNRA-IGVALNDTACKVLRDQIGKHHKWVFVHTK--- 275 +N K+N + V++ + + K + Sbjct: 231 GTISINHSLQYTKEKGYVLGPPKNNSSIRKVSIPMYLVEEFKKYKRTKSKERIQAAELWE 290 Query: 276 AAKRADGTSTPAVRKMRID-SKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVL 334 K S+ + T W +R G + RFHDLRHT A+ LI G + Sbjct: 291 GGKYFYVFSSWNGKPFYPTAVGTWWRRFLKRKGFKYIRFHDLRHTAATLLINEGEHAKTI 350 Query: 335 QEMGGWESIEMVR-RYAHLAPNHLTEHARKIDDIFGDNVPN 374 G I+ Y H + A K++ IFG+ Sbjct: 351 SARLGHADIKTTMNIYGHYLREADEKAANKLNSIFGNTNAK 391 >UniRef50_C5AEN7 Prophage integrase n=19 Tax=Burkholderia RepID=C5AEN7_BURGB Length = 355 Score = 272 bits (697), Expect = 1e-71, Method: Composition-based stats. Identities = 116/368 (31%), Positives = 193/368 (52%), Gaps = 30/368 (8%) Query: 1 MSLFR--RNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 MS+ + ++ IW+ S P G RI+ S T+D++ AQE HD+ K++LWR +KLG+ D T Sbjct: 1 MSIRKHQKSGIWHIDISAPDGTRIRRSAETRDRKAAQEYHDRLKSDLWRQDKLGERADRT 60 Query: 59 FEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEI 118 FEEA +R+L+ A ++ + +W E F ++ ++ +I+ A+ Sbjct: 61 FEEAAVRFLQMCAGQRDYAGKLRHVLYWRERFGAAPVRLLTAERIFDALP---------- 110 Query: 119 WKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAV 178 K + K ++ T+ +++ I+ +L +W+WL++ P ++ Sbjct: 111 ----------THKLVNGAPTKLLAPGTRNRYINTIRRMLNLCL-EWEWLDRVPKLRRFEE 159 Query: 179 RNKRVRWLEKEEAKRLIDECP-EPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVN 237 + RVRW R+I + ++ A+ATG+R+S + L Q+D+ + AW+ Sbjct: 160 PDIRVRWETPAVITRMIGALRLDWMRDAAIVAVATGMRESELFGLRLSQLDLAQCNAWIT 219 Query: 238 PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKT 297 +KS RA V LN+ A VL + +F R + ++ K Sbjct: 220 HAGAKSKRARSVPLNEDAMSVLERRARAATDLIFT------RGYTRDNGPPKLIQQIDKR 273 Query: 298 SWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHL 357 + AC AG+ DF +HDLRHTWASW +Q G PL VL+E+GGWE++ MV++YAHLAP+HL Sbjct: 274 DFARACAAAGMVDFNWHDLRHTWASWHVQHGTPLMVLKELGGWETVAMVQKYAHLAPSHL 333 Query: 358 TEHARKID 365 +HA ++ Sbjct: 334 AQHAANVN 341 >UniRef50_C2RY84 Prophage LambdaBa04, site-specific recombinase, phage integrase n=4 Tax=Bacillus cereus group RepID=C2RY84_BACCE Length = 378 Score = 272 bits (697), Expect = 1e-71, Method: Composition-based stats. Identities = 73/398 (18%), Positives = 144/398 (36%), Gaps = 58/398 (14%) Query: 4 FRRNEIWYASYSLPG----GKRIKESL-GTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 +R E W + + GKR ++++ G K K++A+ ++ + + D ++T Sbjct: 6 RKRGEKWSFTIDIGRDPLTGKRKQKTVSGFKTKKEAERACNELIHQFNTGSLVDDK-NLT 64 Query: 59 FEEACLRWLEEKADKKSLDSDKSRIEF-----WLEHFEGIRLKDISEAKIYSAVSRMHNR 113 E WLE A ++ D+ + +LKD+ V + + Sbjct: 65 LSEYLQEWLENTAKQRVRDTTFINYRRAVNSRIIPVIGSHKLKDLKPLHGQRFVKSLIDE 124 Query: 114 KTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV- 172 + +S + ++K L A + W+ L K P Sbjct: 125 E--------------------------LSPKYIEYIFIVLKGALEDAVK-WELLYKNPFE 157 Query: 173 -IKIPAVRNKRVRWLEKEEAKRLIDEC---PEPLKSVVKFALATGLRKSNIINLEWQQID 228 ++IP R EE K + + AL TG+R+ ++ L+W+ +D Sbjct: 158 HVEIPRPRKVVNNTWSIEETKTFLTYAKFDNPIYYHLFLLALNTGMRRGELLGLKWKNVD 217 Query: 229 MQRRVAWV-----------NPEESKS-NRAIGVALNDTACKVLRDQIGKHHKWVFVHTKA 276 + V E K+ ++++ + CK L+ K +++ KA Sbjct: 218 LVEGKVSVTETLIYDELGFRFTEPKTSGSKRLISIDQSLCKELKSYKAKQNEFKLAIGKA 277 Query: 277 AKRADGTSTPAVRKM--RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVL 334 + D + + T + + A + RFHDLRHT A+ L++ G+ ++ Sbjct: 278 YEDNDLVFSREDGRPIYPRTLTTVFERFIKTAQVPKIRFHDLRHTHATLLLKLGINPKIV 337 Query: 335 QEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIFGDN 371 E G SI+ Y+H+ + + + Sbjct: 338 SERLGHNSIKTTLDTYSHVTLDMQESATIALSEALKSQ 375 >UniRef50_Q5X3B3 Putative uncharacterized protein n=2 Tax=Gammaproteobacteria RepID=Q5X3B3_LEGPA Length = 353 Score = 271 bits (694), Expect = 3e-71, Method: Composition-based stats. Identities = 87/373 (23%), Positives = 160/373 (42%), Gaps = 50/373 (13%) Query: 9 IWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVE--KLGDLPDVTFEEACLRW 66 + L G + A++ + ++ + K + T E R+ Sbjct: 15 SYRVKIRLKGFPTQHATFERLT--DARKWVQQTESAIREGRHFKTTEAKRRTLGEMIDRY 72 Query: 67 LEEKA--DKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQ 124 +++ K+L + + +W E L ++S A I ++ T K+ Sbjct: 73 IKDVIQEKPKNLKNRVLHLNWWKEELGQYSLAELSPAMIAEKRDKLSAGITSRNLKR--- 129 Query: 125 AAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKI--PAVRNKR 182 S T +++A + A ++W WLE +P+ ++ P R Sbjct: 130 -----------------SPSTVVRYMASLSHAFTIAVKEWGWLEDSPMRRVTKPKEPRGR 172 Query: 183 VRWLEKEEAKRLIDECP----EPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNP 238 VR+L +E RL+ EC + L V AL+TG RK I+ L W+ +D R + ++ Sbjct: 173 VRFLSDDERARLLSECKKSDSQYLYLAVVLALSTGGRKMEILGLSWKNVDFNRSIITLH- 231 Query: 239 EESKSNRAIGVALNDTACKVLRDQ---IGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDS 295 E+K+ + L A +++ + VF K ID Sbjct: 232 -ETKNGERRVLPLTGHALDLMKQHAKVRHVNSDLVFPGKD-------------FKTPIDL 277 Query: 296 KTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPN 355 +T + +A +RAGI DFR+HDLRH+ AS+L +G L+ + E+ G ++++MV+RYAHL+ Sbjct: 278 RTPFETALKRAGITDFRWHDLRHSCASYLAMNGASLAEIAEILGHKTLQMVKRYAHLSEA 337 Query: 356 HLTEHARKIDDIF 368 H ++ ++++ Sbjct: 338 HTSKVVARMNEKI 350 >UniRef50_B6ALG3 Integrase n=1 Tax=Leptospirillum sp. Group II '5-way CG' RepID=B6ALG3_9BACT Length = 388 Score = 270 bits (691), Expect = 7e-71, Method: Composition-based stats. Identities = 88/385 (22%), Positives = 156/385 (40%), Gaps = 51/385 (13%) Query: 7 NEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPD---VTFEEAC 63 + IW+ + GKRI++ +G K QA+ ++++ K E + F E Sbjct: 18 SGIWWVDF-WHEGKRIRKKVG--PKAQARAVYERLKTESRLGTLVPKPVRKHEPLFGELA 74 Query: 64 LRWLE-EKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQK 122 +++ K D R+++WL+ F + + + +M+ Sbjct: 75 EQYIRYADLHHKRKGDDTPRLKWWLDAFGDKLALTLKPYMVEEVMEKMNKE--------- 125 Query: 123 VQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKI--PAVRN 180 T A+ L ++KA+ A ++ + +E+ P+ ++ P N Sbjct: 126 -----------------GYKPATIARCLVVLKAVYNRAVKN-EIIERNPIARVFAPKFDN 167 Query: 181 KRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEE 240 VR+L ++ +RL + PE L +V AL TG R+ ++ L W+ +D ++ + Sbjct: 168 SLVRYLTTDQEERLFEALPERLHPIVTVALHTGCRQGELLKLVWEDVDFNAGTIFLR--D 225 Query: 241 SKSNRAIGVALNDTACKVLRDQIGKHHK--WVFVHTKAAKRADGTSTPAVRKMRIDSKTS 298 +KS + V +N +VL G+ VF T + + Sbjct: 226 TKSGDSRRVLMNSKVQEVLLALPGRDTPGAPVFTDTLGGPMEG-----------RNLRRD 274 Query: 299 WLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLT 358 + A ++AG+ FRFHDLRHT+AS L G LQ + G +S M+ RYAHL P HL Sbjct: 275 FDRAIKKAGLAPFRFHDLRHTFASRLAMMGANDRTLQTLLGHKSQRMILRYAHLGPTHLW 334 Query: 359 EHARKIDDIFGDNVPNMSHSEIMED 383 + + + E Sbjct: 335 NAVEGLASSAKKRIGTDTKGISSEG 359 >UniRef50_B7IY65 DNA integration/recombination/invertion protein n=35 Tax=Bacillus RepID=B7IY65_BACC2 Length = 369 Score = 268 bits (686), Expect = 2e-70, Method: Composition-based stats. Identities = 74/391 (18%), Positives = 144/391 (36%), Gaps = 53/391 (13%) Query: 3 LFRRNEIWYASYSL-----PGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDV 57 + +R + + G +R K G K K++AQ K+ EL + + V Sbjct: 5 IRKRGNKYCIVIDIGPDPETGKRRQKWFSGYKTKKEAQADVAKKITELNEGTFI-EPSKV 63 Query: 58 TFEEACLRWLEEKA---DKKSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMHNR 113 T ++ WLE K+ K + ++ I + + L ++ I Sbjct: 64 TLKDYLNHWLEIKSMSIQKSTFAGYRAFINQHVIPSIGMVALHKLNVMHIQKCYK----- 118 Query: 114 KTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV- 172 K ++ + ++K+ L A + + + P Sbjct: 119 ---------------------TAINKGITNNSILLMHRILKSALNLAVKQ-NIISRNPAD 156 Query: 173 -IKIPAVRNKRVRWLEKEEAKRLIDECPEPLKSV-VKFALATGLRKSNIINLEWQQIDMQ 230 +IP ++ +EE K+ + E + A+ TG+R ++ L WQ ID + Sbjct: 157 FAEIPKKEKTSIQTWTEEEVKKFLAHSQESRYHIGYLLAITTGMRLGEVLGLRWQDIDFE 216 Query: 231 RRVAWVN---------PEESKSNRA-IGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRA 280 + +N + +K+N + + + + L+ +K A Sbjct: 217 KHTVTINQTSGHDNKIKKTAKTNSSKRTIPVPNETIVALKKHKILINKEKLRFGSAYLDQ 276 Query: 281 DGTSTPAVRKM--RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMG 338 D + ++ R + S++ A + GI++ +FHDLRHT A+ L++ GV ++ E Sbjct: 277 DLINCNEFGRIIKRAHFRKSFIRATHKVGIKEIKFHDLRHTHATILLKQGVNPKIISERL 336 Query: 339 GWESIEMVR-RYAHLAPNHLTEHARKIDDIF 368 G I M Y+H+ PN E + Sbjct: 337 GHTDISMTLSVYSHVLPNMQEEAVKNFGKSI 367 >UniRef50_UPI000196D4B7 site-specific recombinase, phage integrase family protein n=1 Tax=Neisseria mucosa ATCC 25996 RepID=UPI000196D4B7 Length = 289 Score = 268 bits (686), Expect = 2e-70, Method: Composition-based stats. Identities = 136/331 (41%), Positives = 195/331 (58%), Gaps = 43/331 (12%) Query: 45 LWRVEKLGDLPDVTFEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIY 104 +WR + LGD P V ++EACLRWL+EK KKSL D+++I L F G+ L +++ I Sbjct: 1 MWRQQHLGDKPKVLWDEACLRWLDEKQGKKSLVHDETKIRR-LTAFRGLYLHHMTKTVIM 59 Query: 105 SAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDW 164 + ++++ S TK ++LA ++A+L A +DW Sbjct: 60 AEIAKLEG-----------------------------SNATKNRYLAFVQALLNKAAKDW 90 Query: 165 KWLEKAPVIKIPAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEW 224 ++L+ AP + KR+RWL +EA+RLI P+ + ++V F+L TGLRKSN+ L+W Sbjct: 91 EYLDGAPKLPRYQEAKKRIRWLTPQEAERLIAALPDYIAAMVVFSLNTGLRKSNVFGLKW 150 Query: 225 QQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTS 284 QQID +R+VAW + +E+KS RA+GVALND A VL Q GKH ++VF + + Sbjct: 151 QQIDFKRKVAWFHHDETKSGRALGVALNDAAVAVLLKQRGKHPEYVFTNNRC-------- 202 Query: 285 TPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIE 344 K D K W A + AGIE+FR+HDLRHTWASWL+Q+GV L L+EMGGW + Sbjct: 203 -----KPVKDVKKPWKKALQDAGIENFRWHDLRHTWASWLVQNGVSLYALKEMGGWSDFD 257 Query: 345 MVRRYAHLAPNHLTEHARKIDDIFGDNVPNM 375 MV+RYAHLAP HL HA ++ + + Sbjct: 258 MVQRYAHLAPEHLHRHAGLLNSLLDTKWTQL 288 >UniRef50_Q0AUP6 Phage integrase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AUP6_SYNWW Length = 392 Score = 267 bits (682), Expect = 6e-70, Method: Composition-based stats. Identities = 82/408 (20%), Positives = 147/408 (36%), Gaps = 56/408 (13%) Query: 1 MSLFRR----NEIWYASYS----LPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLG 52 M+ + W Y G +R + T KR+A + + E+ Sbjct: 1 MASIKPYKDQKNEWVLRYDSSDPRTGERRQHKKRFTGTKREANKYLQRILGEIESGSY-S 59 Query: 53 DLPDVTFEEACLRWLEEKADK-----KSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSA 106 DL ++T ++ +W+ K++ S S I + H +L ++ A I Sbjct: 60 DLGNITIKQYLDKWINAYCTPTNLQPKTIRSYTSTINNHIIPHLGRHKLNNLKAAHIADY 119 Query: 107 VSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKW 166 + M +T+ +S T H ++ L+ A + Sbjct: 120 YALMSKSRTE--------------------GGAGLSPTTVLYHHRILHQALKHAVNQ-DY 158 Query: 167 LEKAPVIKI--PAVRNKRVRWLEKEEAKRLID-ECPEPLKSVVKFALATGLRKSNIINLE 223 L++ PV K+ P ++ L E+A+ LI E + V AL TG+R++ I L Sbjct: 159 LKQNPVAKVQPPRKNRPDIKVLSVEQARYLIARYSEEQIYLPVFLALMTGMREAEIAALR 218 Query: 224 WQQIDMQRRVAWVN-----------PEESKSNRAI-GVALNDTACKVLRDQIGKHHKWVF 271 WQ +D R V +E K+ ++ + + + VL+ + + + Sbjct: 219 WQNVDFDNRTLSVTNALQRQENRLELKEPKTKKSRRSIPVPEQVVVVLKKEKERQDCYRE 278 Query: 272 VHTKAAKRADGTSTPAVRKM--RIDSKTSWLSACR-RAGIED-FRFHDLRHTWASWLIQS 327 + + K W I + RFHDLRHT A+ L+ Sbjct: 279 ILGEGYDCRGFVCAWEDGKPYDPEWIGKQWAKLVASDDKIPNGVRFHDLRHTHATILLSQ 338 Query: 328 GVPLSVLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIFGDNVPN 374 + L V+Q+ G ESI Y+H+ P A ++++F Sbjct: 339 NINLKVIQDRLGHESIATTGDIYSHVTPGIQQVAADVLENLFSGKNST 386 >UniRef50_C9RBE5 Integrase family protein n=1 Tax=Ammonifex degensii KC4 RepID=C9RBE5_AMMDK Length = 414 Score = 264 bits (676), Expect = 4e-69, Method: Composition-based stats. Identities = 75/397 (18%), Positives = 149/397 (37%), Gaps = 61/397 (15%) Query: 6 RNEIWYAS---YSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEA 62 + IW A G+ +++S + + +A + + + L +T E Sbjct: 45 KEGIWEARASLGYDADGRPVRKSFYARTREEAVKKLTQALHQASLGV-LTAPARLTLGEW 103 Query: 63 CLRWLEEKADKKSLDSDKSRIE-----FWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKE 117 WLE K + + E + L + L+ ++ A + + + + Sbjct: 104 LATWLETYKKGKLRPTTLANYETVIRAYILPSLGSVPLRSVTPASLQALYNSL------- 156 Query: 118 IWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKI 175 + +S +T ++ A L+ A ++ L + P + Sbjct: 157 -------------------SARGLSARTVRLVHVVLNACLKQAVKN-GLLVRNPAEATEP 196 Query: 176 PAVRNK-RVRWLEKEEAKRLIDECP-EPLKSVVKFALATGLRKSNIINLEWQQIDMQRRV 233 P ++ + VR L +EE + + E L AL TGLR+ ++ L+W+ +D++R V Sbjct: 197 PKLKRRVPVRPLAREEVEAFLKAARGERLYPAFALALKTGLRRGEVLGLKWEDVDLERGV 256 Query: 234 AWVNPE-----------------ESKSNRAI-GVALNDTACKVLRDQIGKHHKWVFVHTK 275 V E K+ ++ V L +L+ + ++ + Sbjct: 257 LRVRRSLVEAKDPETGKVRLVFQEPKTEKSRRTVPLTRDVVALLKSHKARQNEEKLYFGE 316 Query: 276 AAKRADGTSTPAVRKM--RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSV 333 A + + K + ++ S ++AG+E RFH LRHT+A+ L+ SG L Sbjct: 317 AYEDNGLVFCTELGKPIWPRNFLRAFHSVLKKAGLERHRFHALRHTFATLLLASGEELKN 376 Query: 334 LQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIFG 369 +QE+ G E I YA + + + ++D Sbjct: 377 VQELLGHERISTTADVYAEVLEDAKKKAVTRLDAFLK 413 >UniRef50_B2KEQ8 Integrase family protein n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KEQ8_ELUMP Length = 337 Score = 264 bits (675), Expect = 4e-69, Method: Composition-based stats. Identities = 79/375 (21%), Positives = 142/375 (37%), Gaps = 54/375 (14%) Query: 1 MSLFRR-NEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGD--LPDV 57 M +F N W Y + + ++ A ++ K ++ + D DV Sbjct: 1 MGVFETENGTWGIDYRYKSKRYKRVVA--ITRKLALDIERKILTDIKEGKFFPDLDKQDV 58 Query: 58 TFEEACLRWLEEKADK-KSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTK 116 TF E R+ K + + K + L F +++ DI+ I + R Sbjct: 59 TFAEIAERYWSLHGRKTRGAQTFKYTFDIILSRFGHMKVADITTEDIQKFYNDTWERT-- 116 Query: 117 EIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIP 176 S T +H ++ +AI+ A + + P I + Sbjct: 117 -------------------------SPSTANRHFSLFRAIINKALNLKLYKGQNPCIGVV 151 Query: 177 AVRN--KRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVA 234 R+ R ++ KE+ K L+ LK ++ FA+ TG RK I+NL W+ +D + Sbjct: 152 RQRDNPPRDKYFTKEDIKSLLVTAENRLKPIIAFAVLTGCRKMEILNLRWKDVDFYGGII 211 Query: 235 WVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRID 294 + SKS + + L + +L VF Sbjct: 212 RI--TMSKSGKPREIPLANDLRPILLAMHTNPQDKVF-----------------NITVPA 252 Query: 295 SKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAP 354 K S+ ++ G E + FH RHT+AS +Q+ ++ LQ + G +IE+ RY+H +P Sbjct: 253 LKYSFNKLLKKLGFEGYCFHTCRHTFASLYMQNDGNITDLQRILGHATIELTMRYSHFSP 312 Query: 355 NHLTEHARKIDDIFG 369 ++ + + +D I Sbjct: 313 QYIQQTIKVMDGIIA 327 >UniRef50_B7KWK2 Integrase family protein n=1 Tax=Methylobacterium chloromethanicum CM4 RepID=B7KWK2_METC4 Length = 354 Score = 264 bits (675), Expect = 5e-69, Method: Composition-based stats. Identities = 93/370 (25%), Positives = 149/370 (40%), Gaps = 45/370 (12%) Query: 2 SLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEE 61 L+RR ++W+ + G +++S T K +AQ ++ AE GD+P FEE Sbjct: 3 GLYRRGDVWWVRFR-RNGTHVRKSAKTTRKTEAQAYLERLLAE-QAGRARGDVPRHRFEE 60 Query: 62 ACLRWL-EEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 A R+ E + K+L S +S F + L +I+ I V+ Sbjct: 61 AVERYFQETRVRPKTLSSYRSNSRTLAPSFNALHLDEITRRAIAEFVT------------ 108 Query: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVI----KIP 176 + V+ T + LA + I A W WL+ PV + Sbjct: 109 --------------ARKRTGVTDTTIRRDLAFLSVICS-ACGRWGWLDTNPVTTFGKRGL 153 Query: 177 AVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWV 236 R R+L + E RL+ L+ + A+ TG+R+ + L ID+ RR + Sbjct: 154 REGRPRTRFLTQAEFDRLLAAASPSLRPAITLAVETGMRREELFGLTITAIDLNRREVHL 213 Query: 237 NPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSK 296 E +K+ V L+D A ++ + + R+ D K Sbjct: 214 --ERTKTGSPRRVPLSDKAITTIKGLLDEP---------GRPRSSYLFCKGDGSRYCDMK 262 Query: 297 TSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNH 356 + ACRRA + + R+HDLRHT+ASW +Q G L L + G ++M RY HL Sbjct: 263 KGFGGACRRAKVTNMRWHDLRHTFASWYVQRGGDLYRLSRILGHSGLQMTARYGHLRVED 322 Query: 357 LTEHARKIDD 366 L E ++ Sbjct: 323 LHEEIGRVAQ 332 >UniRef50_A4ILC8 DNA integration/recombination/invertion protein n=1 Tax=Geobacillus thermodenitrificans NG80-2 RepID=A4ILC8_GEOTN Length = 387 Score = 264 bits (675), Expect = 5e-69, Method: Composition-based stats. Identities = 76/403 (18%), Positives = 151/403 (37%), Gaps = 53/403 (13%) Query: 2 SLFRRNEIWYASYS----LPGGKRIKESLGT--KDKRQAQELHDKRKAELWRVEKLGDLP 55 S+ +R + Y GKRIK + K K++A++ K AE+ E + Sbjct: 4 SIEKRGKNSYRLVYSMGFDANGKRIKRTKTVHVKTKKEAEKELAKFIAEIEAGEYIKPA- 62 Query: 56 DVTFEEACLRWLEEKADK----KSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRM 110 ++ + W + A+K K+ ++ + I + ++L DI + ++ + Sbjct: 63 KMSLSDFIQLWRDNYAEKQLSPKTFETYNNYINTRIIPQLGHLQLADIKPIHLIRFLNNL 122 Query: 111 HNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKA 170 +T+ + +S T + ++K I A +WK+L+ Sbjct: 123 KKDETR-----------------LDGKKGSLSEATINYYRRILKNIFNRAV-EWKFLQVN 164 Query: 171 PVIKIPAVRN--KRVRWLEKEEAKRLIDECPEP---LKSVVKFALATGLRKSNIINLEWQ 225 P K+P + + ++ E + L+ + + AL GLRK ++ L+W+ Sbjct: 165 PAEKLPKEKEDIGKGDVYDENETRLLLKCLEKEDLKWRLYFTLALTCGLRKGELLALQWE 224 Query: 226 QIDMQRRVAWVNP------------EESKSNRA-IGVALNDTACKVLRDQ---IGKHHKW 269 ID++ +V +E KS ++ +A+ +L+ + + Sbjct: 225 DIDLESGTLYVKHSLSYTKEKGFFLKEPKSKKSKREIAIPSFVLPLLKKYKNVRLREKEK 284 Query: 270 VFVHTKAAKRADGTSTPAVRKMRID-SKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSG 328 + + +T + +T W +R + R HDLRHT A+ ++ +G Sbjct: 285 LQDEWEGGNYNFVFATWNGKPHHHSYPRTKWERFLKRNNLRYIRPHDLRHTSATIMLNNG 344 Query: 329 VPLSVLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIFGD 370 V + E G S + Y H A D+ FG Sbjct: 345 VNYKTVSERLGHSSTRITFDFYVHRTKEADRSAAECFDNQFGA 387 >UniRef50_B9MR26 Integrase family protein n=2 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MR26_ANATD Length = 400 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 65/416 (15%), Positives = 140/416 (33%), Gaps = 68/416 (16%) Query: 2 SLFRRNEIWYA----SYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDV 57 S+++R + + G++ ++ K +++ E K +L + Sbjct: 14 SIYKRKDGLWCGQITIGRDENGRQKRQYFYGKTRQEVAEKIAKTLNDLANGVYVDPA-KT 72 Query: 58 TFEEACLRWLEEKADKKSLDSDK-----SRIEFWLEHFEGIRLKDISEAKIYSAVSRMHN 112 T ++ WL E + S +LKD+ + + + + Sbjct: 73 TLKDWLNTWLWEYKKQTLRPSTFKDYLCYIERHINPAIGHYKLKDLRPEHLQALYNAKYQ 132 Query: 113 RKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAP- 171 +S T + ++ + L A ++ + + Sbjct: 133 E--------------------------GLSISTIKQIHTVLHSALDQALKN-GLVNRNVS 165 Query: 172 -VIKIPA-VRNKRVRWLEKEEAKRLIDECP-EPLKSVVKFALATGLRKSNIINLEWQQID 228 +P + +R L EE +R I E LK+ LA+GLR ++ L W+ ++ Sbjct: 166 EATTLPKGKPKREIRILSLEEQQRFIAALEGERLKTAFLVELASGLRIGELLALRWKDVN 225 Query: 229 MQRRVAWVNP----------------------EESKSNRAIGVALNDTACKVLRDQIGKH 266 + V ++++ + V L + L+ K Sbjct: 226 FKDGYIEVRRSLQRVRIFDGGNSKKTALAFQEPKTEAGK-RIVPLPPVIIEELKQHRKKQ 284 Query: 267 HKWVFVHTKAAKRADGTSTPAVRKM--RIDSKTSWLSACRRAGI-EDFRFHDLRHTWASW 323 + + D + + + + +AG+ + FH LRHT+A+ Sbjct: 285 LEEKLKAGALYEDNDLVFATELGTPIDPRNFERLFYRIREKAGLDKSVNFHALRHTYATR 344 Query: 324 LIQSGVPLSVLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIFGDNVPNMSHS 378 L+++ V+QE+ G + I Y+H+ P A K++ +F + +HS Sbjct: 345 LLEANEHPKVVQELLGHKDISTTLNIYSHVMPEIKKAAAMKLNSLFENIKTKGNHS 400 >UniRef50_A6G3J3 Site-specific recombinase, phage integrase family protein n=3 Tax=Plesiocystis pacifica SIR-1 RepID=A6G3J3_9DELT Length = 363 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 86/379 (22%), Positives = 141/379 (37%), Gaps = 58/379 (15%) Query: 11 YASYSLPGGKRI--KESLGTKDKRQAQELHDKRKAELWRVEKLGDLPD---VTFE----E 61 + ++ P G+R ++ + +R A+ + + L + TF E Sbjct: 3 HIEFTHPNGRRQTVRKVSPVQTRRGAEAYERQLRNALLTGTYDKEAQADQAPTFRVFARE 62 Query: 62 ACLRWLEEKADKKSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 ++ + S + + + F +RL I I Sbjct: 63 FQTNYVATNNKPSTQRSKERVLRLHLIPFFGYMRLDAIGPRHIERY-------------- 108 Query: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRN 180 + K S +T HL +++ +L A R+W ++K P I+ Sbjct: 109 -------------KATKLKDYSRKTLNNHLTILRKLLETA-REWGLIDKVPSIRWLKAAK 154 Query: 181 KRVRWLEKEEAKRLIDE--CPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNP 238 RWL+ EA+RL++ C + ++ L TGLR+ ++ L WQ + + R V Sbjct: 155 PEFRWLDFAEAERLLEASRCEPEWRMMILLGLRTGLRQGELLALRWQDVCFEARRIAVRQ 214 Query: 239 -------EESKSNRAIGVALNDTACKVLRDQIGK----HHKWVFVHTKAAKRADGTSTPA 287 KS RA V L+ + WVF + + Sbjct: 215 AVAEGILGTPKSGRAREVPLSPATLAEFVRHQARYRHLRSPWVFCQLDGDHAGEMLTKGM 274 Query: 288 VRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVR 347 K A RA +E +HDLRH++AS L GVPL +QE+ G +IEM Sbjct: 275 -------CKWPLRRARDRADLEALGWHDLRHSFASHLAMRGVPLKAIQELLGHSTIEMTM 327 Query: 348 RYAHLAPNHLTEHARKIDD 366 RYAHLAP+ L + +D Sbjct: 328 RYAHLAPSTLIDAVAALDP 346 >UniRef50_C8VWK7 Integrase family protein n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VWK7_DESAS Length = 389 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 82/394 (20%), Positives = 153/394 (38%), Gaps = 48/394 (12%) Query: 7 NEIWYASY---SLPGGKRI--KESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEE 61 W + + P GKRI ++ + +R+A++L D AE+ + + + +TF+E Sbjct: 10 KNKWRLNVPDGTGPDGKRITHRKVVEATSEREAKKLLDVFSAEVQKGQYIAP-SKLTFKE 68 Query: 62 ACLRWLEEKAD--KKSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEI 118 +WLE K D K+L K + L ++++DI I + +E Sbjct: 69 FSQKWLESKKDLAPKTLYRYKEILNSRILPAMGHLKIEDIKPFHIMQFYGNLQEPGIRE- 127 Query: 119 WKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKI--P 176 + +S T H ++ I AA + W+ + P +++ P Sbjct: 128 ----------------DGKEGTLSPATVLYHHRLLTNIFNAAVK-WQIILTNPALRVEAP 170 Query: 177 AVRNKRVRWLEKEEAKRLIDECPEP---LKSVVKFALATGLRKSNIINLEWQQIDMQRRV 233 + + E+E+ L+ E +++V AL GLR+ I+ LEW+ ID+ + Sbjct: 171 KAKKHKATSYEEEDTAALLSALEEQPLKFQAIVYIALGCGLRRGEIMGLEWKDIDLTKGT 230 Query: 234 AWVNP------------EESKS-NRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRA 280 V + K+ + +A+ +L+ + ++ + + Sbjct: 231 LEVRQSSQYLPGHGTFAKSPKNESSERIIAVPTETMSLLKQHRVQQNEQRLQVGGLWQAS 290 Query: 281 DGTSTPAVRKM--RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMG 338 D T K + + + FH LRHT AS++I++G+PL + Sbjct: 291 DRLFTTWDGKPMHPDSITKWFSGFLKNNNLSPLPFHGLRHTAASYMIKAGIPLKNIASRL 350 Query: 339 GWESIEMV-RRYAHLAPNHLTEHARKIDDIFGDN 371 G S YAH + E A K++DI Sbjct: 351 GHSSPNTTLNIYAHSFKSVDAEAANKMNDILTTR 384 >UniRef50_C1XYN2 Site-specific recombinase XerD n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XYN2_9DEIN Length = 387 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 78/398 (19%), Positives = 146/398 (36%), Gaps = 41/398 (10%) Query: 2 SLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEE 61 ++++R + Y + GKR + K +++A + + R L D +T +E Sbjct: 9 TIYKRADGRYEYSLMISGKRHRGYA--KTRKEAAKKLAELLVAYGR-NLLPDPDRITLKE 65 Query: 62 ACLRWL---EEKADKKSLDSDK-SRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKE 117 C RWL E + + K + + + I ++ + + + + ++ Sbjct: 66 FCERWLTSVEHRVKPTTHYGYKVALEKHAIPILGDIAVQRLQPLHLTHLYADLLKKRIHP 125 Query: 118 IWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPA 177 +++ K +S T + A L A R W L P ++ Sbjct: 126 NDPKRL---------------KTLSPTTVRLVHRTLHAALEDAVR-WGLLPWNPADRVKP 169 Query: 178 VRNKRV--RWLEKEEAKRLIDECPE-PLKSVVKFALATGLRKSNIINLEWQQIDMQRRVA 234 + R EE R + E L ++ AL TG+R+ ++ L+W ID Q Sbjct: 170 PQAPRYTGEVWTPEEVWRFLAEAQHSRLYALFFLALMTGMRRGELLGLKWADIDWQEGAI 229 Query: 235 WVNPEESKSNRAIG------------VALNDTACKVLRDQIGKHHKWVFVHTKAAKRADG 282 WV +K+ V ++ +VL+ + K A Sbjct: 230 WVRQNLTKAGSKRVVQSPKTYRSSRPVDVSSDVLEVLQQHREQQEKDRLGIGDAWTDEGW 289 Query: 283 TSTPAVRKM--RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGW 340 T +V + + +L+ +RA +++ RFHDLR T S L +GV V+ E G Sbjct: 290 VFTTSVGTPIEPSNLRREFLAIIKRAKVKEIRFHDLRDTHVSLLALAGVDPKVVSERVGH 349 Query: 341 ESIEMV-RRYAHLAPNHLTEHARKIDDIFGDNVPNMSH 377 S+ + Y HL + A + ++ G + Sbjct: 350 ASVAFTQQTYQHLFRAQRKKAALAVGELLGPREDRPTA 387 >UniRef50_C6NU13 Site-specific recombinase, phage integrase family n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NU13_9GAMM Length = 390 Score = 262 bits (669), Expect = 2e-68, Method: Composition-based stats. Identities = 89/401 (22%), Positives = 161/401 (40%), Gaps = 57/401 (14%) Query: 2 SLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVE-----KLGDLPD 56 S+F+ + W A G + S KR+A + + +A L K ++ + Sbjct: 3 SVFQSGKFWRAQVRRRGYPSL--SATFDTKREALQWAAQVEARLETQTPAQVYKKVEVRE 60 Query: 57 VTFEEACLRWLEE---KADKKSLDSDKSRIEFW-LEHFEGIRLKDISEAKIYSAVSRMHN 112 +T + A R+ E ++ + S I++W ++ + L ++ ++ A+ M Sbjct: 61 LTLKAAFERYTREILPSKAPRTSRREHSLIQWWSRSLWQAVPLPNLDGPQVAQAIRAMEK 120 Query: 113 RKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLE-KAP 171 S T LA++ + A ++W +++ P Sbjct: 121 E--------------------------NRSANTIRLMLAVLSHLYTIARKEWGYVDLINP 154 Query: 172 V--IKIPAVRNKRVRWLEKEEAKRLIDEC---PEPLKSVVKFALATGLRKSNIINLEWQQ 226 V ++ P + R R E RL++ C L +V AL T +R+ + L W + Sbjct: 155 VELVRKPRLPEGRDRRFVGNEEDRLLEACARKNPELADLVIVALETAMRQGEVFTLTWDR 214 Query: 227 IDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTP 286 I + PE +K+ + V L++ A L+ Q +H+ R +T Sbjct: 215 ISFTDHTIKLPPELTKTRKGRTVPLSERAEDALKRQRARHNGH-------GNRVWSYAT- 266 Query: 287 AVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMV 346 + + S+ A + AG+EDF FHDLRH S + G+ +V+Q + G ++ +M+ Sbjct: 267 -----QDGVRASFFKAVKVAGLEDFHFHDLRHEATSRFFERGLNAAVVQGITGHKTAQML 321 Query: 347 RRYAHLAPNHLTEHARKIDDIFG-DNVPNMSHSEIMEDIKK 386 RY HL+ L E R D G P S S I++ Sbjct: 322 ARYTHLSGKSLVEAVRGADPAIGVSTTPKPSPSPSGVQIQR 362 >UniRef50_B4BIA4 Integrase family protein n=2 Tax=Geobacillus RepID=B4BIA4_9BACI Length = 384 Score = 261 bits (667), Expect = 4e-68, Method: Composition-based stats. Identities = 62/402 (15%), Positives = 138/402 (34%), Gaps = 57/402 (14%) Query: 3 LFRRNEIWYASYSL----PGGKRIKESLG-TKDKRQAQELHDKRKAELWRVEKLGDLPDV 57 + + + +Y + GKR + S G + K +A++ K K ++ + + Sbjct: 8 IKEKKKGFYFRIDVGKDPVTGKRKQASFGPFRTKTEAKKELLKIKNQVDDGSYFKESTED 67 Query: 58 TFEEACLRWLEEKADKK----SLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMHN 112 F RW + + S + I +++F+ ++ +I+ I S Sbjct: 68 -FSMFMERWFNTSYKRTVEITTAKSREYVIRNHIMKYFQHKKINEITTFDIDSFY----- 121 Query: 113 RKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV 172 S + ++ A + W ++ PV Sbjct: 122 ---------------------VDKLDTGYSGAYIRQMHNLLNQAFDQAVK-WSLVKVNPV 159 Query: 173 --IKIPAVRNKRVRWLEKEEAKRLIDECPEP-LKSVVKFALATGLRKSNIINLEWQQIDM 229 K P V+++ +E R ++ + ++ A+ TG+R+ ++ L+W +D Sbjct: 160 KNAKPPKVKSEEKITWTVDEVNRFLNLIKDSSMEIPYLLAIFTGMRRGEVLGLKWDDVDF 219 Query: 230 QRRVAWVN------------PEESKSNRA-IGVALNDTACKVLRDQIGKHHKWVFVHTKA 276 + + + +E K+ ++ ++++ VL+ K Sbjct: 220 ENKKIRIKRSLCFVSGKGLIFKEPKTKKSKRQISISQHVVNVLKKHKQKQEFQKEKLGVQ 279 Query: 277 AKRADGTSTPAVRKM--RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVL 334 + + K + + A + FHDLRHT A+ L+Q G V+ Sbjct: 280 YQDNNLIVCTDDGKPLDPRNLLRQFYRLIEEANVPRISFHDLRHTHATILMQQGENPKVV 339 Query: 335 QEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIFGDNVPNM 375 E G + + Y+H++ + + A K ++ N Sbjct: 340 SERLGHSRVGITLDLYSHVSDDLQEQAAEKFENALLKQSQNP 381 >UniRef50_B0KAZ5 Phage integrase family protein n=3 Tax=Thermoanaerobacter RepID=B0KAZ5_THEP3 Length = 403 Score = 261 bits (667), Expect = 4e-68, Method: Composition-based stats. Identities = 71/415 (17%), Positives = 146/415 (35%), Gaps = 79/415 (19%) Query: 6 RNEIWYASYSLP---GGKRIK--ESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFE 60 + + + S+ + GKR E++ K+K +AQ+ K+ E D ++T + Sbjct: 13 KGKKYKISFYIGTDGNGKRKYYIETIECKNKAEAQKYLAKKIVEYDTGTLPIDETNITVK 72 Query: 61 EACLRWLEEKADK---KSLDSDKSRIEFWL-EHFEGIRLKDISEAKIYSAVSRMHNRKTK 116 + +WLE K K+ + + +I ++ +L ++ I + + M Sbjct: 73 DYLKKWLETKKSSLALKTYNDYEQKIRLYINPAIGNYKLLKLTPLIIQNMYNNMLE---- 128 Query: 117 EIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIK-- 174 + +S +T ++ L+ A + W+ L P Sbjct: 129 ----------------------QGLSARTIRYTHTVLNEALKQAIK-WQMLRYNPCDGTT 165 Query: 175 IPAVRNKRVRWLEKEEAKRLIDEC-PEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRV 233 +P K ++ L E+AK+ ++ C + + L +G+R S + L+W+ ID + Sbjct: 166 LPKQAKKEMKVLTPEQAKKFLEACVYNRWGILFELLLISGMRPSEALGLKWEDIDWKNNR 225 Query: 234 AWVNPEES--KSN----------RAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRAD 281 V + K+N + L L++ + K + Sbjct: 226 IAVQRTLTRVKNNWQLKEPKTPQSRRTIPLPREVMNDLKEHRKQQSKEKLKAKEYINYDK 285 Query: 282 GTSTPAVRKMRIDSK---------------------------TSWLSACRRAGIEDFRFH 314 + + K + + AG+ + R + Sbjct: 286 DKNKFKPEEWEEKLKDPKVYVDYGLVFATETGRPLDLANINYQYFKPLLKNAGLPNIRLY 345 Query: 315 DLRHTWASWLIQSGVPLSVLQEMGGWESIE-MVRRYAHLAPNHLTEHARKIDDIF 368 DLRHT A+ L+ +G V+ E G +I + Y+H+ P E +K+ + Sbjct: 346 DLRHTCATLLLLAGENPKVVSERLGHANITLTLDTYSHVLPTMQEEATQKLKQML 400 >UniRef50_C0GWH6 Integrase family protein n=3 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GWH6_9DELT Length = 394 Score = 261 bits (667), Expect = 4e-68, Method: Composition-based stats. Identities = 82/380 (21%), Positives = 157/380 (41%), Gaps = 57/380 (15%) Query: 1 MSLFRRNE-IWYASYSLPGGKRIKESLGTK---DKRQAQELHDKRKAELW-----RVEKL 51 M + + +Y Y G+ + + +A++ + +++ R E Sbjct: 35 MEVRSTGKSTYYQRYRDKFGRLKQARIAPVDSITLEEARQKAKQIRSQTTMGFDPRDEAE 94 Query: 52 GDLPDVTFEEAC-LRWLEE-KADKKSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVS 108 + TF+E +++ + K+S D D +E L + +++ +I+ + S Sbjct: 95 KNRNTPTFKEFIRDQYIPYIQVHKRSWDQDSKMLELRVLPLWGNMKMSEITRDDVQQFQS 154 Query: 109 RMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLE 168 T +++A++K I AE+ W +E Sbjct: 155 NFL--------------------------RAGCKPGTVNRYMALVKYIFNLAEK-WDVIE 187 Query: 169 KAPVIKIPAVRNK--RVRWLEKEEAKRLIDECPEP----LKSVVKFALATGLRKSNIINL 222 K P I + + + R+L EE KRL+ E + +++ + TG RKS ++NL Sbjct: 188 KTPARHISRLEDNNCKERYLSSEETKRLLGELKNCKSQVVPDIIELLILTGARKSEVVNL 247 Query: 223 EWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADG 282 WQ++D+++ + + PE +K+ + L+ A ++L + ++VF + K Sbjct: 248 PWQELDLKQGLWTIPPERNKAKTRKTIPLSQGALRILEKRKHNGSEYVFPNPKTG----- 302 Query: 283 TSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWES 342 +W + AGI D R HDLRH +AS L+ SG L +Q++ G + Sbjct: 303 -------GPIKHFHNTWDRVRKNAGIPDVRIHDLRHNFASLLVNSGRSLYEVQKLLGHSN 355 Query: 343 IEMVRRYAHLAPNHLTEHAR 362 I +RYAHL + L + Sbjct: 356 ISTTQRYAHLTQDTLRDATE 375 >UniRef50_B0KAT2 Phage integrase family protein n=7 Tax=Clostridia RepID=B0KAT2_THEP3 Length = 373 Score = 260 bits (665), Expect = 6e-68, Method: Composition-based stats. Identities = 77/399 (19%), Positives = 157/399 (39%), Gaps = 62/399 (15%) Query: 3 LFRRNEIWYASY---SLPGGKRIKESL-GTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 + +R + GKR ++ + G K K++A++ + A++ + E + + +T Sbjct: 5 IRKRGSTYSIVVDVGRDENGKRKQKWISGFKTKKEAEKALAEIIAKIEKNEFI-EPSKIT 63 Query: 59 FEEACLRWLEEKADKK----SLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMHNR 113 ++ WL+ + K +L S+KS I+ + + + I L+ + +I + + Sbjct: 64 LQQFINEWLKIYGEPKWAPKTLVSNKSLIDNYIIPNLGHIELQKLKPVEIQKFYNSLKE- 122 Query: 114 KTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV- 172 K +S T ++ +L+ A + W+++ K P Sbjct: 123 -------------------------KQLSNTTINYVHRLLNQVLKFAVK-WQYIAKNPCE 156 Query: 173 -IKIPAVRNKRVRWLEKE---EAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQID 228 ++ P K E +AK++ + P + V AL TGLR I L W+ ID Sbjct: 157 LVEAPKKDKKEFVTWNFEHVKKAKKIFKDTPIYIH--VMIALYTGLRLGEICGLRWEDID 214 Query: 229 MQRRVAWVN-----------PEESKSNRAI-GVALNDTACKVLRDQIGKH--HKWVFVHT 274 + + V +E K+ + +++ D ++L+ + K +K +F Sbjct: 215 FKNQTITVRRTAQRIDGRFIFKEPKTETSKGIISIPDFLVQILKQEKNKQLQNKLIFGEK 274 Query: 275 KAAKRADGTSTPAVRKM--RIDSKTSWLSACRR-AGIEDFRFHDLRHTWASWLIQSGVPL 331 + S + + ++ + I RFHDLRHT A+ +++SGV L Sbjct: 275 YITEYEGFISVWEDGRFKEPDYVTKKFRKILKKQSDIPVIRFHDLRHTHATLMLRSGVDL 334 Query: 332 SVLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIFG 369 ++ + I Y+H+ E RK++ Sbjct: 335 KIISKRLRHGRISTTADFYSHVDLEMDREALRKLESNLS 373 >UniRef50_Q3Z840 Site-specific recombinase, phage integrase family n=6 Tax=Bacteria RepID=Q3Z840_DEHE1 Length = 435 Score = 260 bits (664), Expect = 8e-68, Method: Composition-based stats. Identities = 65/414 (15%), Positives = 144/414 (34%), Gaps = 51/414 (12%) Query: 3 LFRRN-EIWYASYSLP-----GGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPD 56 + +R+ + W LP G +R K++A + + + Sbjct: 5 IVKRSTDSWSIVIELPRDPATGKRRQSWHTIKGTKKEADKKLRELLTAQDNGIFV-KQSK 63 Query: 57 VTFEEACLRWLEEKADKKSLDS-----DKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMH 111 ++F E W + ++ ++ I + L +++ I + +R Sbjct: 64 LSFGEWLENWCRDYVKIQTTQRTFESYYQNIIGHIEPALGKVILTELTPQIIQAYYAR-- 121 Query: 112 NRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAP 171 + ++ +S ++ +I L+ A + + + P Sbjct: 122 -----------------QLEKGRADGKGGLSARSVLYQHRIISKCLKQATK-LGLIMRNP 163 Query: 172 V--IKIPAVRNKRVRWLEKEEAKRLIDECPE-PLKSVVKFALATGLRKSNIINLEWQQID 228 ++ P R + +K+E RL+D P L G+R+ + L W+ ID Sbjct: 164 ADAVEPPRPRKTAISVPDKDELPRLLDAFETTPYYVFYCLLLYCGMRRGEALALRWKDID 223 Query: 229 MQRRVAWV------------NPEESKS-NRAIGVALNDTACKVLRDQIGKHHKWVFVHTK 275 +++ + +E K+ + + + T +L + + Sbjct: 224 LKQDTIQIAETAFTLRSGEYVIKEPKTPHSRRCIDIPPTMKLLLLEYKADQTAYYAKLGV 283 Query: 276 AAKRADGTSTPAVRKM--RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSV 333 D T + ++L A R+AG + R HDLRH A+ ++Q+G+ + Sbjct: 284 ELGLHDFVFTRPNGEPLNPNTVTHTFLKAVRKAGFDKLRLHDLRHLHATLMLQAGIHPKI 343 Query: 334 LQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIFGDNVPNMSHSEIMEDIKK 386 + E G SI + Y+H+ P + D + N ++ + + + + K Sbjct: 344 VSERLGHASINITLDTYSHVMPGLQKKAVNVFDKMLSANEESLEENSVSKRLAK 397 >UniRef50_A8UWI5 Phage integrase n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UWI5_9AQUI Length = 369 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 86/395 (21%), Positives = 144/395 (36%), Gaps = 63/395 (15%) Query: 2 SLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEE 61 S+ ++ +Y G KR GT KR+A+++ ++ AEL + P+V F Sbjct: 5 SIQKKGRRYYVVI-PIGHKRKWFPAGT-TKREAEKVLAEKLAELNAGSSVLP-PEVRFSF 61 Query: 62 ACLRWLEEKADKKSLDSDKSRIE-----FWLEHFEGIRLKDISEAKIYSAVSRMHNRKTK 116 C WL + A S R E ++ F +L I+ + V+ Sbjct: 62 FCEEWLSKYAKGSVKPSTFRRYEGIIRNHFMPRFGDKKLSRITTGMLQGYVAE------- 114 Query: 117 EIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IK 174 VS T + + ++K + + A + W +++ P ++ Sbjct: 115 --------------------RLSQVSPTTVLQEVVLLKEMFKHA-QSWGYIKHNPAQNLQ 153 Query: 175 IPAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVA 234 P K + L EE + L++ E + A+ TGLR + L+W ID + Sbjct: 154 RPRREKKEIDILTPEEVEFLLENTHEHYRVAFLTAVMTGLRAGELWGLKWDDIDWHSKQI 213 Query: 235 WVNPE-------ESKSNRAI-GVALNDTACKVLR----DQIGKHHKWVFVHTKAAKRADG 282 +V KS +I V + D + L+ + VF K Sbjct: 214 YVRRTLWNGEFHTPKSRHSIGKVDMPDVLVEELKLWEIRCPPNKYNLVFPSPKGEPSEHQ 273 Query: 283 TSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWES 342 + A RRAG+ FH LRHT AS I++G + +Q G S Sbjct: 274 NV----------VNRYFKPALRRAGLRVVSFHSLRHTNASIRIRAGQNIKYIQRQLGHAS 323 Query: 343 IEMV-RRYAHLAPNHL--TEHARKIDDIFGDNVPN 374 I Y HL + A+ +D + ++V N Sbjct: 324 INTTLDIYGHLFEDMDFNRSQAQLLDGVLRNSVRN 358 >UniRef50_Q1IPY0 Phage integrase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IPY0_ACIBL Length = 359 Score = 258 bits (660), Expect = 3e-67, Method: Composition-based stats. Identities = 102/382 (26%), Positives = 171/382 (44%), Gaps = 59/382 (15%) Query: 2 SLFRRNEI---WYASYSLPGGKRIKESL-GTKDKRQAQEL--HDKRKAELWRVEKLGDLP 55 +++R + ++AS++ GKR + L G QA+EL + + E +V + Sbjct: 11 GVYQRKDRPGQFWASWTDQNGKRRQRRLRGVFTLTQAKELLAAAQLRVERIKVLGFAEPT 70 Query: 56 DVTFEEACLRWL---EEKADKKSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMH 111 FE+ R+L + K + ++ +E ++F ++L I I + V++ Sbjct: 71 KERFEKIEARFLLHQRARLTKAGYERERGVVETHLHDYFGQMQLALIRRGDIANFVTK-- 128 Query: 112 NRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAP 171 VS T AK L +K + R +W+ L P Sbjct: 129 -------------------------RAAEVSPATVAKELVTLKHLFRLCV-EWELLVLNP 162 Query: 172 V--IKIPAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDM 229 +K P V RVRWL+ EE + L+ CP+ L+ + A ATG+R+S ++ + W +D Sbjct: 163 ATGVKAPKVAPGRVRWLQPEELRALLQACPDWLRPIAGLAAATGMRRSEVLGVRWFDVDR 222 Query: 230 QRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIG-KHHKWVFVHTKAAKRADGTSTPAV 288 + + +K+N + V LN +A V+ K + +F Sbjct: 223 RNGCLTLRQ--TKNNESRIVFLNQSALHVIDSLRKGKSSEKLFP---------------- 264 Query: 289 RKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRR 348 + +L CR GIEDFR+HDLRH +AS L QSG L + E+ G + + M +R Sbjct: 265 KVTPEQVSMGFLRTCRELGIEDFRWHDLRHCFASLLRQSGADLQDVAELLGHKDLRMTKR 324 Query: 349 YAHLAPNHLTEHARKIDDIFGD 370 Y+HL+P HL+ AR+ D + G+ Sbjct: 325 YSHLSPAHLSAAARRFDAVLGE 346 >UniRef50_B1B8Q2 Phage integrase n=1 Tax=Clostridium botulinum C str. Eklund RepID=B1B8Q2_CLOBO Length = 366 Score = 258 bits (659), Expect = 4e-67, Method: Composition-based stats. Identities = 57/391 (14%), Positives = 134/391 (34%), Gaps = 52/391 (13%) Query: 2 SLFRRNEIWYASYSL----PGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDV 57 ++ + W + G K+ K G K K++ + + ++ + + + Sbjct: 4 TVRKDGSTWSYLVYVGLNEKGKKKYKRKRGFKTKKECEAALAELINQIEKGSIIT-NDKM 62 Query: 58 TFEEACLRWLEEKAD----KKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNR 113 T +E WLE + K I+ + + +L ++ I + Sbjct: 63 TVKEYIEYWLETYPKNNCSPSTYKRYKFFIKDIINYIGKHKLSKLNPMIIQKFYEDL--- 119 Query: 114 KTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV- 172 + +S T K M+ L+ A + W+ + P Sbjct: 120 ----------------------LSDRNISNNTVIKTHRMLHLALKHA-QQWQLINNNPCD 156 Query: 173 -IKIPAVRNKRVRWLEKEEAKRLIDECPEP-LKSVVKFALATGLRKSNIINLEWQQIDMQ 230 + P + +++ + +E +D E L + A+ TG R + ++W +D+ Sbjct: 157 LVTPPKATKQEMKYWQPDEINIYLDILKEEFLYPAIFLAIQTGCRVGELCAIKWSDVDLI 216 Query: 231 RRVAWVNP-----------EESKS-NRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAK 278 + ++ + K+ N + L +TA L++ + + Sbjct: 217 DKTIRIDKTLQRIDCKLALKYPKTQNSIRTITLLETAITFLKNLKKNRIEKKLKYGIELD 276 Query: 279 RADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMG 338 + + + RFHDLRH+ A+ L+++GV ++ + Sbjct: 277 YV-LCWEDGRPIDPHYISQHFPKLLDKYNLPKIRFHDLRHSHATLLLKAGVNAKIISKRL 335 Query: 339 GWESIE-MVRRYAHLAPNHLTEHARKIDDIF 368 G ++ + Y+H++ E K++++ Sbjct: 336 GHSTVAFTLDTYSHVSTKMQKEEMSKVENLL 366 >UniRef50_C9AMW3 Phage integrase n=8 Tax=Enterococcus faecium RepID=C9AMW3_ENTFC Length = 378 Score = 257 bits (658), Expect = 4e-67, Method: Composition-based stats. Identities = 61/402 (15%), Positives = 142/402 (35%), Gaps = 59/402 (14%) Query: 2 SLFRRNEIWYA---SYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 + +R + WY + G ++ E +G + +A+ K +++ + D Sbjct: 4 GVRKRGKRWYYYFEDINDDGSRKKVEKVGGDTRPEAEAALRKVLSDIDETGQYFLGTDTR 63 Query: 59 FEEACLRWLEEKADKK----SLDSDKSRIEFWLE-HFEGIRLKDISEAKIYSAVSRMHNR 113 ++ W++E + ++ + I+ + + +L D+S A + + ++ Sbjct: 64 VKQYLDFWMKEYVKLNLKYNTYENYRFTIKNHINGYLGKKKLTDLSPALLQNFIN----- 118 Query: 114 KTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV- 172 K S +T +++K L A W +++ P+ Sbjct: 119 ---------------------AEFKKGYSKKTMTITHSVLKNALNMAVYPWGLIKQNPML 157 Query: 173 -IKIPAVR-----NKRVRWLEKEEAKRLIDECPE--PLKSVVKFALATGLRKSNIINLEW 224 +KIP K ++ + E+ +++ PE P + TG+R + L W Sbjct: 158 YVKIPKYEERPTTKKDLKIISLEDFDHMLEITPEGHPFYIPLNIGFYTGMRVGEVCGLTW 217 Query: 225 QQIDMQRRVAWVNPEESKS------------NRAIGVALNDTACKVLRDQIGKHHKWVFV 272 +D V + K+ + + + T +L+ + + Sbjct: 218 DNVDFSNGTITVEKQMVKNDGAWVYGTPKTSSSNRTIFIGQTLLAILKKHKKQQLENRMK 277 Query: 273 HTKAAKRADGTSTPAVRKMRIDSKTSW--LSACRRAGIEDFRFHDLRHTWASWLIQSGVP 330 + K ++ T + S W + F FH LRHT A+ L+++G Sbjct: 278 YGKLYIDSNAVCTKEDGGLVTPSVVKWNTRRISNALSLS-FNFHSLRHTHATLLLENGAK 336 Query: 331 LSVLQEMGGWESIEMVR-RYAHLAPNHLTEHARKIDDIFGDN 371 + + E G I + Y+H+ + ++++ ++ Sbjct: 337 MKEISERLGHSRISITMDTYSHVTDKMRNQTVDIMENLRKNS 378 >UniRef50_Q3ABG2 Prophage LambdaCh01, site-specific recombinase, phage integrase family n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ABG2_CARHZ Length = 371 Score = 257 bits (657), Expect = 6e-67, Method: Composition-based stats. Identities = 68/393 (17%), Positives = 145/393 (36%), Gaps = 56/393 (14%) Query: 3 LFRRNEIWYASYSL----PGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 + +R + L G K+ K G K K++A+++ + ++ + +T Sbjct: 5 IRKRGNYYSVVLYLGKDENGKKKYKWIGGFKTKKEAEKVLAEMINKVETNNFIFP-EKIT 63 Query: 59 FEEACLRWLEEKADKKSLDSDKSRIE-----FWLEHFEGIRLKDISEAKIYSAVSRMHNR 113 +E WLE + E + F+ I L+ + I + + Sbjct: 64 LKEFLNYWLENYVRPNLSPTTAYGYEAIINLHIIPFFKNIELQKVRPIDIQQYYNSKRDE 123 Query: 114 KTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAP-- 171 +S +T +H ++ A + + + P Sbjct: 124 ---------------------------LSGKTLLQHHRILHKAFDFAMK-LQLIPNNPID 155 Query: 172 VIKIPAVRNKRVRWLEKEEAKRLIDECPE-PLKSVVKFALATGLRKSNIINLEWQQIDMQ 230 + P + + + L+ +E K L++ + L+ + AL+ GLR+ ++ L+W+ ++ + Sbjct: 156 FVDSPKAKKYKAKILDLKEIKTLLNALKDTDLEVPINLALSLGLRRGELLALKWEDVNWE 215 Query: 231 RRVAWVNP-----------EESKSNRA-IGVALNDTACKVLRDQIGKHHKWVFVHTKAAK 278 + +E KS + + L+ T +L++ K + + K Sbjct: 216 EGTIQIRRNLVRAGTKLILKEPKSETSIRTLKLSKTLLTMLKNHRKKQIELKLMLGNEYK 275 Query: 279 RADGTSTPAVRKM--RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQE 336 +M + ++ G+ D R HDLRHT A+ +++S +P + Sbjct: 276 DTGFICCKNNGEMINPSTFSHQFSDFLKKHGLPDIRLHDLRHTNATLMLKSNIPAKIASS 335 Query: 337 MGGWESIEMV-RRYAHLAPNHLTEHARKIDDIF 368 G ++ + Y+H+ + E A KIDDI Sbjct: 336 RLGHSTVAITLDLYSHVLTDMDEEVANKIDDII 368 >UniRef50_C4KAG8 Integrase family protein n=1 Tax=Thauera sp. MZ1T RepID=C4KAG8_THASP Length = 330 Score = 256 bits (655), Expect = 9e-67, Method: Composition-based stats. Identities = 79/374 (21%), Positives = 135/374 (36%), Gaps = 60/374 (16%) Query: 2 SLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDL--PDVTF 59 S+ +R W + G +S K A+ + E+ + T Sbjct: 3 SIRQRGNRWQCRVTRHGFPPETKS--FATKADAETWARSIEVEMDKGVHQNRASVERTTL 60 Query: 60 EEACLRWLEEKAD-KKSLDSDKSRIEFWL-EHFEGIRLKDISEAKIYSAVSRMHNRKTKE 117 + LR+ EE KK + R+ L ++S A + Sbjct: 61 ADILLRYAEEVTPCKKGAKDEAIRLNALRANKLAKHSLANLSAAAVAKFRDE-------- 112 Query: 118 IWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAP--VIKI 175 K VS T + LA+I ++L A R+W + + I+ Sbjct: 113 -------------------RLKTVSAGTVLRDLALISSVLNHARREWGFPVENAVQAIRK 153 Query: 176 PAVRNKRVRWLEKEEAKRLIDEC------PEPLKSVVKFALATGLRKSNIINLEWQQIDM 229 P R R L +E RL+ L+ ++ AL T +R+ ++ L W+ + + Sbjct: 154 PRQPQGRERVLSHDEEARLLAASAPIGRRSPWLQPIIILALETAMRRGELLALRWEHVSL 213 Query: 230 QRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVR 289 +R A + ++K+ V L+ A L+ VF ++ A Sbjct: 214 DKRTALL--PDTKNGTRRLVPLSPRAIDTLKHMPRAIDGRVFPISEPALHL--------- 262 Query: 290 KMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRY 349 + AC RAGI+ FHDLRHT + L + L+ L + G +S++M++RY Sbjct: 263 --------RFKLACDRAGIDGLHFHDLRHTATTRLAEKLTNLAELSAVTGHKSLQMLKRY 314 Query: 350 AHLAPNHLTEHARK 363 H L E + Sbjct: 315 YHPNAEALAEKLAR 328 >UniRef50_A8ZUN3 Integrase family protein n=2 Tax=Desulfobacteraceae RepID=A8ZUN3_DESOH Length = 397 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 85/385 (22%), Positives = 150/385 (38%), Gaps = 51/385 (13%) Query: 6 RNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKL--GDLPDVTFEEAC 63 RN+ + + GGK+ ++ + A+E+ K K ++ R T + Sbjct: 47 RNKTYKVTVK-HGGKK--KTKLVDNLDLAREIETKLKHDITRGTFHLQTQKQAPTLDAFW 103 Query: 64 LR-WLEE-KADKKSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 + +L +++KKS D + RL I++ I +S + Sbjct: 104 DKDYLPWIRSNKKSWYEDAINYQTHLAPKLGQKRLDAITQLDIERLLSGL---------- 153 Query: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKIPAV 178 ++ KP + T + ++ + A R K+ P I P + Sbjct: 154 ----------RKGTSKRGKPYAAATIKHQIVLLTRMFNVAARWGKYTGPNPCKLIAKPRL 203 Query: 179 RNKRVRWLEKEEAKRLIDECPEP----LKSVVKFALATGLRKSNIINLEWQQIDMQRRVA 234 N++ +L +E RL+D + + F L TGLR+ + L WQ ++M R+ Sbjct: 204 NNQKTGFLTDDELTRLLDVLEQWPDRMSAGFIAFLLHTGLRRGELFRLTWQDVNMDRQTL 263 Query: 235 WVNPEESKSNRAIGVALNDTACKVLRDQIGKHH-KWVFVHTKAAKRADGTSTPAVRKMRI 293 V + K R + L++ A L +H +VF A+RAD Sbjct: 264 TVR--DPKGGRDTVLPLSEKAIDALNSLPREHETPFVFYGRNGAQRAD------------ 309 Query: 294 DSKTSWLSACRRAGIE-DFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHL 352 + W + A + FR HDLRH +AS L+ +G L +Q + +S M +RYAHL Sbjct: 310 -FRHPWYRIKQAAALPEGFRLHDLRHHFASALVSAGTNLYTVQALLTHKSAAMTQRYAHL 368 Query: 353 APNHLTEHARKIDDIFGDNVPNMSH 377 + L + + DD+ + Sbjct: 369 SDQALRDAVKLSDDLSKKATSDTKA 393 >UniRef50_B9MP49 Integrase family protein n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MP49_ANATD Length = 373 Score = 256 bits (654), Expect = 1e-66, Method: Composition-based stats. Identities = 73/396 (18%), Positives = 136/396 (34%), Gaps = 54/396 (13%) Query: 3 LFRRNEIWYASYS--LPGGKRIKESLG-TKDKRQAQELHDKRKAELWRVEKLGDLPDVTF 59 + ++ + +Y + GKR ++ LG + K +A+E + +++ K L TF Sbjct: 5 IAKKGKKYYIVVDIGVVDGKRKQKWLGGFETKAEAEEALPRILNIIYQ-NKNKLLEQKTF 63 Query: 60 EEACLRWLEEKADKKSLDSDKSRIE-----FWLEHFEGIRLKDISEAKIYSAVSRMHNRK 114 E WL A + S + L ++ + + Sbjct: 64 GELLDLWLNTVAKNRVSLSTFQSYSSSIALHIKPFLGDVELNKLTAMDLQKYYQHITGE- 122 Query: 115 TKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV-- 172 K +S+ H +I L A R +EK P Sbjct: 123 ------------------------KGLSSTLALYHHRIIHQALDYAVR-MNMIEKNPADY 157 Query: 173 IKIPAVRNKRVRWLEKEEAKRLIDECPE-PLKSVVKFALATGLRKSNIINLEWQQIDMQR 231 + P R+ + +++ KR +D + V A+ TG+R I L+W I++++ Sbjct: 158 VDPPRKRSYQPSIWDEDTIKRALDIFRNTNIWVPVLLAIYTGMRIGEITALKWDDINLEQ 217 Query: 232 RVAWVNPEESKSNRA-------------IGVALNDTACKVLRDQIGKHHKWVFVHTKAAK 278 V+ K NR VA++ + L+ K ++ + Sbjct: 218 GYIVVSKTLMKINRQLYIKEKGENKSSYRIVAISSNVIEELKQWRRKQEQYKEKLKELYH 277 Query: 279 RADGTSTPAVRKM--RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQE 336 T ++ + + G+ RFHDLRHT AS L++ GV + + Sbjct: 278 NEGFVCTFEDGRVQDPKYITKVFQKTIEKHGLPKIRFHDLRHTHASLLLKHGVDPKHISD 337 Query: 337 MGGWESIEMV-RRYAHLAPNHLTEHARKIDDIFGDN 371 G +I Y+H+ + A +DI + Sbjct: 338 RLGHSTITTTLNIYSHVFDEKRRKVAETFEDILKNQ 373 >UniRef50_B1RM53 Phage integrase n=4 Tax=Clostridium RepID=B1RM53_CLOPE Length = 400 Score = 256 bits (654), Expect = 1e-66, Method: Composition-based stats. Identities = 67/409 (16%), Positives = 141/409 (34%), Gaps = 69/409 (16%) Query: 2 SLFR-RNEIWYASYSL---PGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDV 57 ++++ N + ++ G ++S K K++ + + R L + Sbjct: 18 TIYKMSNGKFRGQLTIGYNENGTPKRKSFTGKTKKEVSDKMKDFYVDNNRG-LLPTDDKI 76 Query: 58 TFEEACLRWLEEKA----DKKSLDSDKSRIEFWLEH--FEGIRLKDISEAKIYSAVSRMH 111 T + WL S + + ++E I+L D+ I + + + Sbjct: 77 TLSKWFYTWLFTYRIHDLKPSSFERYEGLYRNYIESSSIGKIKLMDLRTHHIQAYYNSLV 136 Query: 112 NRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAP 171 + + K S T +K+ L A ++ ++ K Sbjct: 137 SEERK-------------------------SPSTIKTINKCLKSCLNQALKE-GYITKNY 170 Query: 172 V--IKIPAV---RNKRVRWLEKEEAKRLIDEC-PEPLKSVVKFALATGLRKSNIINLEWQ 225 I +P + + EE + + EC + AL TGLR I+ L+W Sbjct: 171 CTLITLPKGSESPKEIINIFTLEEQQTFMKECMNNKNGMLYILALGTGLRLGEILALKWT 230 Query: 226 QIDMQRRVAWVNP----------------------EESKSNRAIGVALNDTACKVLRDQI 263 I+ + +N ++K+ V LND ++L+ Sbjct: 231 DINFKNNYIDINKAIKSTYKIDSKGNREFQIIEQQPKTKN-SIRTVPLNDNLIELLQQHR 289 Query: 264 GKHHKWVFVHTKAAKRADGTSTPAVRKMRI--DSKTSWLSACRRAGIEDFRFHDLRHTWA 321 K + + + + + + + ++ + +++ RFHDLRHT+A Sbjct: 290 KKQMIDRDSNIEIYFDNNLVFSTPIGNYLNESNVRKTFKRILNKCNLKELRFHDLRHTFA 349 Query: 322 SWLIQSGVPLSVLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIFG 369 + L ++GVP +Q + G I Y H+ + + K++ +F Sbjct: 350 TRLFENGVPPKTVQTILGHSDISTTLNIYTHVMKDTKDKAIDKLNFLFK 398 >UniRef50_B1VP49 Putative phage integrase n=1 Tax=Streptomyces griseus subsp. griseus NBRC 13350 RepID=B1VP49_STRGG Length = 423 Score = 255 bits (652), Expect = 2e-66, Method: Composition-based stats. Identities = 76/401 (18%), Positives = 143/401 (35%), Gaps = 35/401 (8%) Query: 2 SLFRRNEIWY---ASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 ++ +R + Y A P G R ++ K + + + + E+ R + Sbjct: 11 TITKRKDGRYQAAAYVFRPDGTRTRKFAYGKTREEVASQLTEMQ-EMTRQGIPAASSTMA 69 Query: 59 FEEACLRWLEEKADKKSLDSDKSRIE-----FWLEHFEGIRLKDISEAKIYSAVSRMHNR 113 F + WL A ++ + + E + RL +S A + ++ Sbjct: 70 FGDYLTYWLATIAPERLKPATLNSYEGLSRLYIRPALGKKRLNRLSPADVRRFLAEFKAA 129 Query: 114 KTKEIWKQKVQ--AAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAP 171 + + R + + S +T A++++ L+ A R+ + + + Sbjct: 130 CLCCLRGADEERPEDKRTCCAVGRCCKRRPSARTVQYIHAVLRSALQQAIRE-ELIARNV 188 Query: 172 V--IKIPAVRNKRVRWLEKEEAKRLIDECPEP-LKSVVKFALATGLRKSNIINLEWQQID 228 ++ P V K VR L+ E + L+ L ++ ++TGLR+ + L W +D Sbjct: 189 ARIVETPTVEPKEVRPLDAAEVRLLLKTARPHRLYALWLLLVSTGLRRGEALGLTWADVD 248 Query: 229 MQRRVAWVN-----------PEESKSNRA-IGVALNDTACKVLRDQIGKHHKWVFVHTKA 276 + V K+ R+ ++L + + L + + V Sbjct: 249 LTAGTLRVRRNVQRIRRELIFGTPKTMRSVRTISLPKSCVQALTAHRTQQEREQKVAGAK 308 Query: 277 AKRADGTSTPAVRKM-------RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGV 329 ++ G V CR A + R HDLRHT AS L+ GV Sbjct: 309 WQQTPGQPAGLVFTTLTGRVTDPRSLNRMLTILCRDAKVRRVRVHDLRHTCASLLLAQGV 368 Query: 330 PLSVLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIFG 369 + E G +I M YAH+ + L A ++DD G Sbjct: 369 DARTIMETLGHSTITMTLDTYAHVMGSTLRAAAEQMDDALG 409 >UniRef50_C6HW36 Putative phage integrase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HW36_9BACT Length = 367 Score = 254 bits (650), Expect = 4e-66, Method: Composition-based stats. Identities = 86/368 (23%), Positives = 153/368 (41%), Gaps = 49/368 (13%) Query: 7 NEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDV---TFEEAC 63 + +W+ GKRI+ +G K A+ ++++ K E + T E Sbjct: 18 SGVWWVDLR-HEGKRIRRKVGPKT--AAKAVYERLKTEAREGRLVPREKKRIFPTVREVV 74 Query: 64 LRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKV 123 + + ++K +W+E R D++ + + ++ Sbjct: 75 TE-RASRFSGRQGVNEKRYASWWIEKIGEKRTNDLTPSDLRKILNE-------------- 119 Query: 124 QAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIK--IPAVRNK 181 + + +S QT ++A L A RD K ++ +P+ + Sbjct: 120 -----------ARDSRDLSPQTINHFFGHLRAALNEALRDGK-IDHSPMQGFSLLPTPRG 167 Query: 182 RVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEES 241 R+R+L + E RL + +V+FA+ TGLR+ +L W ID+Q RV + S Sbjct: 168 RLRFLTEGEELRLREVMTPADFRLVRFAILTGLRREEQFSLTWSDIDLQNRVLTI--PRS 225 Query: 242 KSNRAIGVALNDTACKVLRDQIGKH---HKWVFVHTKAAKRADGTSTPAVRKMRIDSKTS 298 K V L+D A ++L+ + W F A D + + Sbjct: 226 KHGGTRHVPLSDEAVEILKAIRTERRVVSAWCFPSQNPATHID---------PQNFYRRV 276 Query: 299 WLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLT 358 +L A +AGI+D +H LRHT AS L+ +GV + +QE+ G +++ M RY+HL+ HLT Sbjct: 277 YLPALEKAGIKDVIWHTLRHTCASRLVMAGVDIRTVQEILGHKTLAMTTRYSHLSGAHLT 336 Query: 359 EHARKIDD 366 + +I Sbjct: 337 QAVNRISK 344 >UniRef50_B8J3W5 Putative uncharacterized protein n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8J3W5_DESDA Length = 337 Score = 253 bits (648), Expect = 6e-66, Method: Composition-based stats. Identities = 80/382 (20%), Positives = 158/382 (41%), Gaps = 54/382 (14%) Query: 2 SLFRRNE-IWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRV--EKLGDLPDVT 58 S+ +R + W A G ++ K A++ + E+ R + + T Sbjct: 3 SIRKRGDLQWEARIRRKGWPVTCKT--FNTKSDAEKWARDIENEMDRGVFTSRTEAENTT 60 Query: 59 FEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEI 118 EA R++ E + +L+ I + ++ + I Sbjct: 61 LNEALERFIAEYV----------------PRYNNPKLETIKARALQR--RKIATKFMAAI 102 Query: 119 WKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLE-KAPVIKIPA 177 + + + + V+ T LA+I + A W + PV +IP Sbjct: 103 RSKDIADFM------QERAAEGVAGNTIRLDLALISRVFNVAISSWGMESLRNPVSRIPK 156 Query: 178 VR--NKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAW 235 + + R R LE +E +RL+ C + L+ +V+FA+ T +R+ + +L WQ ID+++ A+ Sbjct: 157 PKVSSGRTRRLEGDEEERLLAACSDSLRPIVRFAIETAMRRGEMASLTWQNIDLEKSTAY 216 Query: 236 VNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDS 295 + ++K+N V L+ A ++L++ VF + + Sbjct: 217 L--PKTKNNEERTVPLSPAAVQILKNLEKGESARVFQLSD-----------------VSI 257 Query: 296 KTSWLSACRRAGIEDFRFHDLRHTWASWLIQSG-VPLSVLQEMGGWESIEMVRRYAHLAP 354 +++ C++ GIE FHDLRH S L + + + ++ + G ++++M+ RY+HL Sbjct: 258 TQAFIKTCQKVGIEGLTFHDLRHEATSRLFERTDLDIMEIKSITGHKTLQMLARYSHLRT 317 Query: 355 NHLTEHARKIDDIFGDNVPNMS 376 L + R G+ PN+S Sbjct: 318 YKLVD--RLAGARRGETPPNLS 337 >UniRef50_Q1NPW4 Phage integrase n=5 Tax=Deltaproteobacteria RepID=Q1NPW4_9DELT Length = 465 Score = 253 bits (648), Expect = 6e-66, Method: Composition-based stats. Identities = 84/377 (22%), Positives = 149/377 (39%), Gaps = 61/377 (16%) Query: 7 NEIWYASYSLPGGKRIKESLGTKDK---RQAQELHDKRKAELWRVE-----KLGDLPDVT 58 + ++ Y GK + +G D +AQ + ++ + E + T Sbjct: 128 GKTYHLRYRDGHGKLRQHKIGGADDISFDKAQAAATRLRSRVVLGEDPLAERQTKKQVPT 187 Query: 59 FEEAC-LRWLEEKAD-KKSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMHNRKT 115 EE +++ K+S SD ++ L F L I +A++ M Sbjct: 188 LEEFAAEKYMPYVKGYKRSWKSDFGYLKNHLLPLFGNQHLDQIKQAEVIELHHGM----- 242 Query: 116 KEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWL--EKAPVI 173 + + + T + + +++ I A + WK + P Sbjct: 243 ---------------------KARGYALATCNRQVILLRYIFNLARK-WKIPGADNNPTT 280 Query: 174 KI--PAVRNKRVRWLEKEEAKRLIDECPE----PLKSVVKFALATGLRKSNIINLEWQQI 227 + N R R+L ++EA RL LK +V L G RKS ++N W+ Sbjct: 281 GVALFEANNGRERYLTEDEAARLKAALESSENTQLKYIVSLLLLLGCRKSELLNSRWEDF 340 Query: 228 DMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPA 287 D+ RR + SKS +A V L+ A +VL I + +V + K + Sbjct: 341 DLARRSWRIPL--SKSGKARYVPLSTAALEVLAS-IPRLSPYVVPNPKTLQPFVSVF--- 394 Query: 288 VRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVR 347 SW +A ++AG+ D R HDLRH++AS+L+ SG + + ++ G ++ + Sbjct: 395 ---------RSWDTARKKAGLPDVRMHDLRHSFASFLVNSGRSIYEVSQLLGHSQLKTTQ 445 Query: 348 RYAHLAPNHLTEHARKI 364 RY+HL+ + L I Sbjct: 446 RYSHLSNDTLLAAVDSI 462 >UniRef50_D1C8V1 Integrase family protein n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C8V1_SPHTD Length = 376 Score = 253 bits (648), Expect = 6e-66, Method: Composition-based stats. Identities = 80/392 (20%), Positives = 143/392 (36%), Gaps = 52/392 (13%) Query: 2 SLFRR-NEIWYASYS-LPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTF 59 S+ R + W A + G R ++S + +++ + + E + T Sbjct: 11 SIRERPDGYWEARMTFWEQGTRRRKSFYGRTRQEVADKLARALVEQQYGLPV-VSERETV 69 Query: 60 EEACLRWLEEKADK----KSLDSDKSRI-EFWLEHFEGIRLKDISEAKIYSAVSRMHNRK 114 ++ RWLE+ A ++ +S + I RL +S ++ +++ Sbjct: 70 KDYLERWLEDVARPSLRPRTYESYRGIITRHLTPALGRTRLARLSPDQVQRYINQ----- 124 Query: 115 TKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVI- 173 + +S +T H A+++ L A R W + + Sbjct: 125 ---------------------KQAAGLSPRTVTYHRAVLRKALNDAMR-WGLVSRNAAAL 162 Query: 174 -KIPAVRNKRVRWLEKEEAKRLIDE-CPEPLKSVVKFALATGLRKSNIINLEWQQIDMQR 231 P R+L EEA+ +D L+++ ALA GLR+ + L W +D++ Sbjct: 163 AAPPKQDRPPARFLTPEEARHFLDTVAGHRLEALFTVALAVGLRQGEALGLRWDDVDLEA 222 Query: 232 RVAWVNPEESKSN------------RAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKR 279 V +S VAL A + LR+ + + + Sbjct: 223 GTLTVRYALQRSGGALVLVEPKTQRSRRTVALPAVALRALREHRTRQLEERIAAPYWDDQ 282 Query: 280 ADGTSTPAVRKMR-IDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMG 338 ++ + + + AG+ RFHDLRH AS L+ GV V+ E+ Sbjct: 283 GFVFTSTIGTAIDARNLTREFHRLRAEAGLPWLRFHDLRHGCASLLMAQGVNPRVVMEIL 342 Query: 339 GWESIEMVR-RYAHLAPNHLTEHARKIDDIFG 369 G I + Y+H+AP + A KID I G Sbjct: 343 GHSQITLTLGTYSHVAPTLARDAADKIDGILG 374 >UniRef50_A9VJZ8 Integrase family protein n=15 Tax=Bacillus cereus group RepID=A9VJZ8_BACWK Length = 370 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 60/390 (15%), Positives = 137/390 (35%), Gaps = 54/390 (13%) Query: 5 RRNEIWYASYSL-----PGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTF 59 ++ ++ + G ++ K+ G K++A+ K +E+ + + + + Sbjct: 9 KKTGKYFYIVDIGIDPLTGRRKQKKKRGFITKKEAENALTKLLSEVHTGTYV-EPSKLLY 67 Query: 60 EEACLRWLEEKADKKSLDSDK----SRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKT 115 E W K + + K + I+L ++ + + V+ + + Sbjct: 68 GEYLESWFNTKKYSVGIQTAKVLKGYLNSRIIPSLGNIKLAKLTSLHMQNYVNSLRDE-- 125 Query: 116 KEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIK- 174 + T K + +I+ L A D + + K K Sbjct: 126 ------------------------GLKRGTIEKIIKLIRNSLEHAI-DLELITKNVAAKT 160 Query: 175 -IPAVRNKRVRWLEKEEAKRLIDECPEPLKSV-VKFALATGLRKSNIINLEWQQIDMQRR 232 +P + + + E + + + S+ AL TG+R+ ++ W+ +D+++ Sbjct: 161 KLPKADKEELTVWNEHEVQFFLKAAQDSRYSIVFHMALVTGMREGELLGFRWKDVDLEKG 220 Query: 233 VAWVNPEESKSNRA-----------IGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRAD 281 ++ S + + L + L+ K + + D Sbjct: 221 HLTISQTLSHDGKTFLLGGKTKSSLRKILLPASTVAKLKKHRAVVLKEKLSQGEEYQDND 280 Query: 282 GTSTPAVRKM--RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGG 339 + + S + ++ + RFHDLRHT A+ L+ GV + V+ E G Sbjct: 281 LVMCTPSGTPINPANVRRSLNALIKKVAVPKIRFHDLRHTHATLLLAKGVNVKVISERLG 340 Query: 340 WESIEMV-RRYAHLAPNHLTEHARKIDDIF 368 +I++ Y+H+ P + KI++I Sbjct: 341 HSNIKITLDTYSHVLPTMQEDAVNKIEEIL 370 >UniRef50_C4KVM9 Site-specific recombinase, phage integrase family n=8 Tax=Burkholderiales RepID=C4KVM9_BURPS Length = 339 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 75/365 (20%), Positives = 135/365 (36%), Gaps = 38/365 (10%) Query: 2 SLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRV--EKLGDLPDVTF 59 ++ +R W G + K +A ++E+ R D T Sbjct: 3 TVSKRENGWMCQVRKKGYPATSKK--FATKIEALAWGRMIESEMDRGLFASRNDAERTTL 60 Query: 60 EEACLRWLEE-KADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEI 118 + R+ + K+S SD R + +L ++ + + Sbjct: 61 ADLLDRYTRDISPTKRSGGSDMGRAGKLKKQLGAYKLTALTASHLVDYRD---------- 110 Query: 119 WKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEK--APVIKIP 176 K VS QT L ++ +L A R+W + P + P Sbjct: 111 -----------------ARLKEVSPQTVVHELNLLNRVLTLATREWGIVLPAGVPKVIKP 153 Query: 177 AVRNKRVRWLEKEEAKRLIDECPE-PLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAW 235 R R L +E + +ID L+ ++ A+ATG+R+ + +L W+ ID+ RR A Sbjct: 154 RKPQGRDRRLHPDEIQAIIDATESLDLRDFIRLAVATGMRRGELASLRWESIDLARRTAH 213 Query: 236 VNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVF-VHTKAAKRADGTSTPAVRKMRID 294 + +K++ V L+ A +L + F V + A RA + RK+ + Sbjct: 214 LPV--TKTDSPRTVPLSTDAVTILHARRVAQCVAPFNVTSDALTRAFCRAVQRARKLYVS 271 Query: 295 SKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAP 354 + + R HDLRH S L + G+ + + G +++ M++RY HL Sbjct: 272 TCAVLDRPIDSNWLIGIRLHDLRHEATSRLFEKGLNPMEVASITGHKTLSMLQRYTHLRA 331 Query: 355 NHLTE 359 L + Sbjct: 332 EDLAK 336 >UniRef50_B9MQ70 Integrase family protein n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MQ70_ANATD Length = 325 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 55/343 (16%), Positives = 114/343 (33%), Gaps = 57/343 (16%) Query: 57 VTFEEACLRWLEE----KADKKSLDSDKSRI-EFWLEHFEGIRLKDISEAKIYSAVSRMH 111 +TF + W+ + K + S I + I+L+++S I + + Sbjct: 11 LTFSQWLDIWMNQFMKIKLRPTTYSSYIQLINKHIKPKLGHIQLQNLSPLAIQECYNSLL 70 Query: 112 NRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAP 171 +S +T +I + L+ A + ++ + Sbjct: 71 LE--------------------------NLSPKTVKNIHVIIHSALKQAIK-CGYINQNV 103 Query: 172 --VIKIPAVRNKRVRWLEKEEAKRLIDECP-EPLKSVVKFALATGLRKSNIINLEWQQID 228 + +P V ++ L E+ + + L L TGLR+ ++ L+W ID Sbjct: 104 SEAVALPKVERPEIKTLSSEQVTTFLQAAQTDSLYPAFLLELYTGLRRGELLGLKWDDID 163 Query: 229 MQRRVAWVN-------------------PEESKSNRAIGVALNDTACKVLRDQIGKHHKW 269 V P ++K+ + + D L++ +H + Sbjct: 164 FDNCTIHVKRSLVRVYDHNLKKTTLLLQPPKTKAG-YRVIPIPDFVVAELKELYEEHQRI 222 Query: 270 VFVHTKAAKRADGTSTPAVRKM-RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSG 328 T + + + + ++A + + R HDLRHT A+ L+Q Sbjct: 223 KLSQPNFNSLNLMFVTTQGTPIDPRNFERKFKQLLKKANLPNIRLHDLRHTVATLLLQQN 282 Query: 329 VPLSVLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIFGD 370 V ++QE+ G I Y+H+ + + +I Sbjct: 283 VHPKIVQEILGHRDISTTLDIYSHVNIELKKKATSCLVEILNS 325 >UniRef50_B8D1P6 Phage integrase family protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1P6_HALOH Length = 391 Score = 251 bits (642), Expect = 3e-65, Method: Composition-based stats. Identities = 65/398 (16%), Positives = 157/398 (39%), Gaps = 52/398 (13%) Query: 2 SLFRRNEI-WYASYSL----PGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPD 56 ++ +R + W + ++ GK+ ++ K K++ + + K +L+ + + Sbjct: 9 TIVKRKDGLWQGAVTIGTDPQTGKQKRKYFYGKTKKEVAKKMTELKMKLFNGTY-SEPSE 67 Query: 57 VTFEEACLRWLEEKADKKSLDSDKSR----IEFWLEHFEGIRLKDISEAKIYSAVSRMHN 112 + + RW+E + + + ++ + +LKD+ ++ ++ Sbjct: 68 MKLIDWLHRWIEGRKSTLAYSTYRNYKVMINNHLADDIGETKLKDLKARQVQELLND--- 124 Query: 113 RKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV 172 K ++ VY +S +T + + L A ++ + + Sbjct: 125 ----------------KLEKGKVYGEGGLSPRTVKYIYSTLHTALEQAVKE-NMIPRNIC 167 Query: 173 --IKIPAV-RNKRVRWLEKEEAKRLIDECPEPLKSVVK-FALATGLRKSNIINLEWQQID 228 +++P K++ K++ + + ++ AL TG+R+ ++ L+W+ ID Sbjct: 168 KAVEVPKKQEEKKLHTWNKKQVNIFLKAARDYKYFILHYLALNTGMRRGELLGLQWKDID 227 Query: 229 MQRRVAWVNPE-------------ESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTK 275 M+++ V + ++KS + + D + L+ K + + Sbjct: 228 MEKKRIEVKRQLARTDEGLIFKKVKTKSG-NRTIPITDNVVRELKRHQIKQGEKRLALGE 286 Query: 276 AAKRADGTSTPAVRKMRIDSK---TSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLS 332 A + ID + + G+ + R+HDLRHT+A+ +++ P+ Sbjct: 287 AYNKKADLVASNGIGNPIDPRNLVRDFKDIIEETGLPEIRYHDLRHTFATLFLEAKGPIK 346 Query: 333 VLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIFG 369 LQ++ G SI + Y+H+ L E RK++ +F Sbjct: 347 TLQQILGHSSITVTIDTYSHVTEEMLIEAERKMETMFK 384 >UniRef50_C0DT82 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DT82_EIKCO Length = 285 Score = 251 bits (642), Expect = 3e-65, Method: Composition-based stats. Identities = 128/321 (39%), Positives = 190/321 (59%), Gaps = 45/321 (14%) Query: 67 LEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAA 126 ++E DKKSLD DK +I L G+ L D++ I+ V++ Sbjct: 1 MQENQDKKSLDGDKDKIR-LLPELRGVLLSDLTRDFIHQVVNQ----------------- 42 Query: 127 IRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKRVRWL 186 K S+ TK ++ A+I+AIL +W WL+KAP +K+ KR+RWL Sbjct: 43 ------------KNCSSSTKNRYFALIRAILNKCVNEWDWLDKAPKLKLHKEPKKRIRWL 90 Query: 187 EKEEAKRLIDECP--EPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSN 244 EEA+RL++ ++ +V F+LATGLR++N++NL+W+QID++R+VAW+ P+++K+ Sbjct: 91 YPEEAQRLVNALDSLPYMQHLVIFSLATGLRQANVLNLKWEQIDLRRQVAWIYPDQAKAG 150 Query: 245 RAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACR 304 +AIGV LN TA +VL D + +VF H+K A+ ++ S W A Sbjct: 151 KAIGVPLNHTAMQVLMD-RPRVSDYVFTHSKGAR------------VKSISSRVWREALE 197 Query: 305 RAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKI 364 +AGI DFR+HDLRHTWASWL+Q G PL+ L+EMGGWES+EMV+RYAHLAP HL++HAR I Sbjct: 198 KAGITDFRWHDLRHTWASWLVQQGTPLAALKEMGGWESVEMVQRYAHLAPEHLSQHARLI 257 Query: 365 DDIFGDNVPNMSHSEIMEDIK 385 D + + + + + Sbjct: 258 DSGIAPGIGLLQSFVKVSNAQ 278 >UniRef50_A3V904 Phage integrase n=5 Tax=Rhodobacteraceae RepID=A3V904_9RHOB Length = 445 Score = 251 bits (641), Expect = 4e-65, Method: Composition-based stats. Identities = 87/402 (21%), Positives = 161/402 (40%), Gaps = 61/402 (15%) Query: 7 NEIWYASYSLPGGKRIKESL---GTKDKRQAQELHDKRKAELWRV-----EKLGDLPDVT 58 +Y Y+ K L G QA+ L + + +L E+ T Sbjct: 42 GMTYYMRYTDDRSKTRYIKLANVGDITLPQARGLCRQHRNKLALGIDPLAERAVKRLVPT 101 Query: 59 FEEAC-LRWLE-EKADKKSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMHNRKT 115 F + R+L +A+K+S +D++ + + +I+ + S Sbjct: 102 FGDFVRERYLPFAQANKRSWKTDETLARTHLTPQLGTMHMDEITIEDVLSLQQ------- 154 Query: 116 KEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKW--LEKAPV- 172 + + + + L +++ + A RDWK + P Sbjct: 155 -------------------IGLKAGAAPASINRRLILLRYMFNLAWRDWKIAGVTGNPTH 195 Query: 173 -IKIPAVRNKRVRWLEKEEAKRLIDECPEP----LKSVVKFALATGLRKSNIINLEWQQI 227 +++ N++ R++ EE L E L+ +V F L TG R++ +++ W+ + Sbjct: 196 GVRLLKENNQKERYVRAEELALLYRAVKESQNKMLQHIVAFLLLTGTRRNEVLHATWEDV 255 Query: 228 DMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGK-HHKWVFVHTKAAKRADGTSTP 286 D+ + + + ++KS A V LND A VL+ G+ ++F + K K Sbjct: 256 DLIKGMWRI--PQTKSGFARHVPLNDGAYAVLQQMQGRSQSHYIFGNPKTGK-------- 305 Query: 287 AVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMV 346 + +W SA +AG+ D R HDLRHT+AS LI +G + +Q++ G I+ Sbjct: 306 ----PYVHVWYAWNSARVKAGLPDVRLHDLRHTFASLLINNGRSIYEVQKLLGHTQIKTT 361 Query: 347 RRYAHLAPNHLTEHARKIDDIFGDNVPNMSHSEIME-DIKKA 387 +RYAHL L + + + + ++E DI A Sbjct: 362 QRYAHLTQETLLDASNIGTAAVAATLGMVPQRNVIEGDIYDA 403 >UniRef50_D1RC05 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1RC05_9CHLA Length = 369 Score = 250 bits (640), Expect = 4e-65, Method: Composition-based stats. Identities = 76/377 (20%), Positives = 145/377 (38%), Gaps = 52/377 (13%) Query: 9 IWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGD--LPDVTFEEACLRW 66 + G +S ++A++ + KA + D T + R+ Sbjct: 18 SYRVQIRESDGFPP-KSKTFPTLQEAKDWQKQEKARRRQGYGSSDLMTGKKTLIDLIDRY 76 Query: 67 --LEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQ 124 + K + K +++W L IS I + T + K+ Sbjct: 77 ETIILPTKPKDARNMKRHLDWWRNKIGKYGLTKISSDLIAQCRQELAEGVTSKKTKR--- 133 Query: 125 AAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPA--VRNKR 182 S T ++LA + + + W+ P ++ R Sbjct: 134 -----------------SHATVNRYLATLSTVFTYGINECGWITDNPCRRVSKFTESKGR 176 Query: 183 VRWLEKEEAKRLIDEC----PEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNP 238 R + + E RL +EC E L VV A+ TG+R+ I+ L W I++ R+ + Sbjct: 177 DRIVAENEFTRLFEECKNSRNEHLLPVVVLAVTTGMRRGEILGLTWDCINLDRQTIIL-- 234 Query: 239 EESKSNRAIGVALNDTACKVLRDQIGKHHK---WVFVHTKAAKRADGTSTPAVRKMRIDS 295 +E+K+ + V++ A ++LR K + +VF K R +I Sbjct: 235 KETKNGKQRTVSIVGEALELLRSHYQKRNPNTPYVFPAKK-------------RFGKICI 281 Query: 296 KTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPN 355 + +W A +RAGI++ R HDLRHT+ ++ ++G + L G ++++MV RY H+ Sbjct: 282 RKAWDEALKRAGIQNLRIHDLRHTFCTYASETGASILELAAAMGHQTLQMVNRYTHMN-- 339 Query: 356 HLTEHARKIDDIFGDNV 372 + ++ + + Sbjct: 340 -QKKITHQLSSSVNERI 355 >UniRef50_B2V4P6 Phage integrase family protein n=9 Tax=root RepID=B2V4P6_CLOBA Length = 382 Score = 250 bits (639), Expect = 6e-65, Method: Composition-based stats. Identities = 60/402 (14%), Positives = 135/402 (33%), Gaps = 57/402 (14%) Query: 2 SLFRRNEIWYASYS--LPGGKRIK-ESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 + ++ WY + GKR + E G K++AQ+ E + +++ Sbjct: 4 GVRKKGNRWYYYFEAGRVNGKRKRIERKGGDTKKEAQQALRMALNEFNNTGSYVNETNMS 63 Query: 59 FEEACLRWLEEKADKKSLDSDKSRIEFWL-----EHFEGIRLKDISEAKIYSAVSRMHNR 113 F + W +E K + + + ++ + ++K ++ A + +++ Sbjct: 64 FSDFLDYWFDEYVMKNCKYNTQQTYKSFININLKPNLGIYKIKQLNYAALQEFLNK---- 119 Query: 114 KTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV- 172 S T A+ ++I L A +++++ P Sbjct: 120 ----------------------QYAHGYSKNTLARLRSIISHSLEMAVSPYQFIKVNPAK 157 Query: 173 -IKIPAVRN--KRVRWLEKEEAKRLIDE--CPEPLKSVVKFALATGLRKSNIINLEWQQI 227 + +P N K + E ++I C ++ A TG+R + L W + Sbjct: 158 NLTLPRFDNIAKENIVISIENFNKIIGRFPCGTSFYIPLQIAFNTGMRVGEVCGLTWDCV 217 Query: 228 DMQRRVAWVNP--------------EESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVH 273 D +++ + ++K +++ DT +L+ + + Sbjct: 218 DFEKKTIRIEKILIFKTKQGYEFSTPKTK-GSIRTISIGDTLINILKTHKNWQEENKKNY 276 Query: 274 TKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIE-DFRFHDLRHTWASWLIQSGVPLS 332 + T + +LS ++ F FH LRHT A+ L++ G + Sbjct: 277 GSYYNDNNFVCTKENGSFVTMTSLRYLSRIINMELQIKFNFHSLRHTHATMLLEGGANIK 336 Query: 333 VLQEMGGWESIEMVR-RYAHLAPNHLTEHARKIDDIFGDNVP 373 +Q+ G Y+H+ +++I V Sbjct: 337 DIQDRLGHSKFSTTMDLYSHVTAKMQNSTVNILENILNQEVK 378 >UniRef50_Q0VMT6 Rci protein n=22 Tax=Proteobacteria RepID=Q0VMT6_ALCBS Length = 367 Score = 250 bits (638), Expect = 8e-65, Method: Composition-based stats. Identities = 89/372 (23%), Positives = 149/372 (40%), Gaps = 33/372 (8%) Query: 7 NEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLP--DVTFEEACL 64 + W A G ++ + KR A++ + + E+ R + P +T +A Sbjct: 9 SGTWKAVIRKTGFPTTSKT--FRTKRDAEDWSRRTEDEMVRGVYIQRAPAERMTVADALK 66 Query: 65 RWLEEKADKKSLDSDKSRIEF---WLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQ 121 R+L E + K S + ++ L +S I Sbjct: 67 RYLAEVSPTKRPASAACDVRHSKPLIKGLGKYSLAALSPEIIAKYRDE------------ 114 Query: 122 KVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKW-LEKAPV--IKIPAV 178 A + + +P+P S T LA++ + A R+W L PV I+ PA Sbjct: 115 -RLAGLDRKDAKGNPDPRPRSPNTVRLDLALLGHMFTTAIREWGIGLPSNPVQNIRRPAP 173 Query: 179 RNKRVRWLEKEEAKRLIDECPEP----LKSVVKFALATGLRKSNIINLEWQQIDMQRRVA 234 R R L + E RLI L +V+ AL TG+R + I L QID++RRV Sbjct: 174 PPGRERRLNQTEEDRLIAAVDSHSNPMLGWIVRLALETGMRSAEITTLRRNQIDLKRRVV 233 Query: 235 WVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRID 294 + E+K+ V L+ TA +L++ + + + G ++ + Sbjct: 234 RLL--ETKNTAPRTVPLSSTATAILQEALANPVRPI----DTDLVFFGEPGRDGQRRPYN 287 Query: 295 SKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAP 354 WL A AG+++ FHDLRH S L++ G+ + + G +S++M++RY HL Sbjct: 288 FNKPWLKAKETAGMKELHFHDLRHEAVSRLVEGGLSDQQVAAISGHKSMQMLKRYTHLRA 347 Query: 355 NHLTEHARKIDD 366 L I D Sbjct: 348 EDLVNELDSIAD 359 >UniRef50_C0EDT0 Putative uncharacterized protein n=2 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EDT0_9CLOT Length = 462 Score = 249 bits (637), Expect = 1e-64, Method: Composition-based stats. Identities = 77/454 (16%), Positives = 157/454 (34%), Gaps = 85/454 (18%) Query: 2 SLFRRNEIWYASY---SLPGGKRIKESLGTK-----DKRQAQELHDKRKAELWRVEKLGD 53 ++ +R + + GGK+I++ + K KRQ ++ +++K + G Sbjct: 3 TITKRGNTYKITVSCGYDSGGKQIRQHMTWKPAPGMTKRQIEKELERQKVLFEENCRSGQ 62 Query: 54 L--PDVTFEEACLRWLEEKADK----KSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAV 107 + + RW+ E A+K K++ ++ L I+L + + Sbjct: 63 FISGSIKLADFAQRWMSEYAEKHLKAKTIAHYNELLKRILPALGHIKLDKLQPHHLIQFY 122 Query: 108 SRMHNRKTKEIWKQKVQAAIRKGKELPVYEP----------------------------- 138 + +E KQ+ +K + + Sbjct: 123 DNLSESGIREDIKQRCSTDFKKVLKQHGFTKVELSKRAGVSVATLDSVSQGKNITGQSAR 182 Query: 139 --------------------KPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKIP 176 + ++ +T H ++ ++L A + W+ + P +K P Sbjct: 183 RICEAFHIKLQELFTPVDADRGLAAKTINSHHRLLSSMLNTAVQ-WQIIFSNPCDRVKPP 241 Query: 177 AVRNKRVRWLEKEEAKRLIDEC---PEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRV 233 + K R+L++++ +LI PE +++V + TG+R+ + LEW DM+ ++ Sbjct: 242 KLERKEARYLDEKQTAQLITCLQREPEQYQTMVLLLIYTGMRRGELCGLEWPDFDMEHKL 301 Query: 234 AWVNPE------------ESKS-NRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRA 280 ++ E +K+ + + L+D A K+L + A Sbjct: 302 LYIQRESLYLPDRGIFEDTTKTYSSTRVIKLSDEAVKLLIQHKFAQNAERAKLGDAWVDT 361 Query: 281 DGTSTPAVRKM--RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMG 338 T K T + ++ + H LRHT A+ LI +GV L+ + Sbjct: 362 GKIFTTCTGKPIHPDTLTTWFHKFVQKNDLPPVSVHSLRHTNATLLIANGVNLTTVAGRL 421 Query: 339 GWESI-EMVRRYAHLAPNHLTEHARKIDDIFGDN 371 G + YAH A I +I Sbjct: 422 GHADTGTTTKVYAHAIKTADEMAAETIQNILNPA 455 >UniRef50_C6NUL0 Integrase n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NUL0_9GAMM Length = 357 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 85/380 (22%), Positives = 144/380 (37%), Gaps = 70/380 (18%) Query: 9 IWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLG--DLPDVTFEEACLRW 66 W G + + + K +A+ +AE+ R + T E R+ Sbjct: 16 GWQVRIRKRGFPQQVRT--FRTKAEAEAWARSIEAEMDRGVWQDRSEAERTTVGELLDRY 73 Query: 67 LEEK-ADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQA 125 E ADKK + SR++ + F + + ++ + I S + Sbjct: 74 AREVLADKKHCTPELSRLKTLDDAFGRVAVARLTSSAIASFRDK---------------- 117 Query: 126 AIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKA--PVIKI--PAVRNK 181 KPVS QT + ++ +L+ AER+W P K+ P + Sbjct: 118 ----RLRDEGRGGKPVSGQTVKHEIGLLHRVLKKAEREWGIALPMGLPTEKVQAPKLPQG 173 Query: 182 RVRWLEKEEAKRLIDEC----PEPLKSVVKFALATGLRKSNII----------------- 220 R R L+ E +RL+ C L + +FA+ T +R ++ Sbjct: 174 RDRRLQGNEEERLLAACARARNPWLLPLTRFAIETAMRAGEMLETKGTADPETGERPIQT 233 Query: 221 -NLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKR 279 L W+ +D+++R A + +K+ A V L+ A ++LR VF Sbjct: 234 TGLLWKHVDLKKRTATL--PMTKNGTARVVPLSSVAVEILRGLPRSMDGRVF-------- 283 Query: 280 ADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGG 339 S+ AC+RAGIED RFHDLRH S L + + + + G Sbjct: 284 ---------GTTYEAIHLSFTRACKRAGIEDLRFHDLRHEATSRLFERDLNPMQVAAITG 334 Query: 340 WESIEMVRRYAHLAPNHLTE 359 ++++M++RY HL L Sbjct: 335 HKTLQMLKRYTHLRAEDLAR 354 >UniRef50_UPI000169495E prophage LambdaBa04, site-specific recombinase, phage integrase family protein n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI000169495E Length = 379 Score = 248 bits (635), Expect = 2e-64, Method: Composition-based stats. Identities = 68/398 (17%), Positives = 139/398 (34%), Gaps = 68/398 (17%) Query: 4 FRR---NEIWYASYSLP----GGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPD 56 RR WY Y + G ++ KE G + K +AQE + ++EL + + Sbjct: 16 RRRCTCGAKWYYRYDITDPKTGKRKQKEVGGFRTKEEAQEAAVRIQSELLNGTYV-EPTK 74 Query: 57 VTFEEACLRWLE-----EKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMH 111 +T E L ++E E A + +RL D++ + + + Sbjct: 75 LTVGEFLLDFVENTLKYEVAPNTYEQRMTFVKNHIQPNIGSLRLTDLTPNHVQKFYNSLR 134 Query: 112 NRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAP 171 ++ A + W + + P Sbjct: 135 EH---------------------------YGAGYVQNIGNLLSKAFTQAVK-WNMISRNP 166 Query: 172 --VIKIPAVRNK--RVRWLEKEEAKRLIDECPE---PLKSVVKFALATGLRKSNIINLEW 224 ++K P++ K +++ E+ ++ +D + + AL +G+RK ++ L W Sbjct: 167 IPLVKKPSLSRKNTKMKTWTVEDQRKFLDYAKDGPKLYYVIFLLALTSGMRKGELLGLIW 226 Query: 225 QQIDMQRRVAWVNPE------------ESKSNRA-IGVALNDTACKVLRDQIGKHHKWVF 271 +D ++ + + K+ A + L + KV++ + Sbjct: 227 DDVDTKKGIVSIKRTIVYAQRKLYLKDMPKTESAIRTIQLPEPTIKVMKQWKLECPANEL 286 Query: 272 VHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPL 331 + + G P + AG+ + H LRHT+A+ L+ S V Sbjct: 287 NLLFPSPKTKGILYP------NSLDKQLAKTIKGAGVPEITMHGLRHTFATTLLGSNVNP 340 Query: 332 SVLQEMGGWESIEMVR-RYAHLAPNHLTEHARKIDDIF 368 ++QEM G +I+ Y+H+ PN + A ++ + Sbjct: 341 KIVQEMLGHATIKTTMDTYSHVLPNMQKDAASQLGAVL 378 >UniRef50_C5SDU6 Integrase family protein n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SDU6_CHRVI Length = 361 Score = 248 bits (635), Expect = 2e-64, Method: Composition-based stats. Identities = 84/378 (22%), Positives = 156/378 (41%), Gaps = 46/378 (12%) Query: 7 NEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAEL--WRVEKLGDLPDVTFEEACL 64 ++ A L G+ + S K + A+ K +A R + + T ++A Sbjct: 12 GTVYKARVRLI-GQDGETSRTFKTRTAAERWARKFEAAALEDRAGLIMEGQKHTLKDAIK 70 Query: 65 RWLEEKADKKSL---DSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQ 121 R+ E + + R+++W +RL D++ AKI + K Sbjct: 71 RYRTEILPDHTATTRPTYAQRLDYWCAELGHLRLSDVTPAKIAGCRDELLTSK------- 123 Query: 122 KVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKIPAVR 179 + T +LA++ ++L + W W++++P+ + P+V Sbjct: 124 --------------------APATVHGYLAVLASVLTTCVKRWHWVKESPMAHVDKPSVA 163 Query: 180 NKRVRWLEKEEAKRLIDECP----EPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAW 235 N R R+L ++E RL++ C L V A+ TG R+ ++ L W+ +D+ + V + Sbjct: 164 NGRTRFLSQDELSRLLEACRASESPDLYLAVVLAITTGARRGELLGLRWRDVDLVKDVLY 223 Query: 236 VNP---EESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMR 292 + +K V + +L + + + A + + Sbjct: 224 LRVDNETTTKGG-VRAVRIASQVKPILEARQAGYRRGKVADITGAALVF--PSRVSTRQP 280 Query: 293 IDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHL 352 +D +T + +A RRAGIE FR+HDLRH+ AS++ G L + + G S + +RYAHL Sbjct: 281 VDLRTPFRTALRRAGIEGFRWHDLRHSAASFMAAHGASLVEIGAVLGHRSAQTTKRYAHL 340 Query: 353 APNHLTEHAR-KIDDIFG 369 A E + D + G Sbjct: 341 AEQAAHELVQGTADKVLG 358 >UniRef50_C2Z776 Prophage LambdaBa04, site-specific recombinase, phage integrase n=10 Tax=Bacillus cereus group RepID=C2Z776_BACCE Length = 379 Score = 248 bits (634), Expect = 3e-64, Method: Composition-based stats. Identities = 70/399 (17%), Positives = 135/399 (33%), Gaps = 66/399 (16%) Query: 5 RRNEIWYASYSL----PGGKRIKESLG-TKDKRQAQELHDKRKAELWRVEKLGDLPDVTF 59 +R + W + + GKR ++S G + K++AQ E+ + D ++ Sbjct: 7 KRGDKWSFTIDVGIDPMTGKRKQKSKGGFRTKKEAQNAAANMITEIEKGMYFDDKQ-LSV 65 Query: 60 EEACLRW---LEEKADKKSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMHNRKT 115 + + + + S + D S ++ + L F ++K I I S + + Sbjct: 66 LDIWGKLKPIRKAELKITSYEKDMSLVKLYILPTFGYKKIKSIKPVIIQSYYAELKE--- 122 Query: 116 KEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--I 173 K +S T + + I + A +W+ L + + Sbjct: 123 -----------------------KGLSNGTISNIHRCFRCIFKHAV-EWEILHDNIMNKV 158 Query: 174 KIPAVRNKRVRWLEKEEAKRLIDECPEP---LKSVVKFALATGLRKSNIINLEWQQIDMQ 230 K P ++ +E R + E A+ TG+R+ ++ L W+ ID Sbjct: 159 KKPREEQGEMKTWSSKECNRFLHYLKEKNKKYYIFFLLAIYTGMRRGELLALTWKDIDFD 218 Query: 231 RRVAWVNPEESKSNRAIGVALNDTA----------------CKVLRDQIGKHHKWVFVHT 274 + VN K+ L A L+ K F Sbjct: 219 NKRILVNKSLVKTEEG----LFKAATKTKSSNRSISISSFVVTELQSYYAYKKKEFFRWG 274 Query: 275 KAAKRADGTSTPAVRKMRIDS---KTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPL 331 + ++AG+ R HDLRHT A+ ++Q+G Sbjct: 275 IHLNEEAYIFAGNTIHSPLHIDAPHRFLKDHYKKAGVPRIRIHDLRHTHATLMLQAGEHP 334 Query: 332 SVLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIFG 369 ++Q+ G SI+M +Y+H+ N + A +++ Sbjct: 335 KIVQDRLGHSSIQMTLDKYSHITQNMQQQAAENFENVIK 373 >UniRef50_C2YK72 Phage integrase n=3 Tax=Bacillus cereus group RepID=C2YK72_BACCE Length = 387 Score = 247 bits (632), Expect = 4e-64, Method: Composition-based stats. Identities = 78/406 (19%), Positives = 143/406 (35%), Gaps = 65/406 (16%) Query: 2 SLFRRNEIWYASYSLP--GGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTF 59 S +R + W G + G K K++AQ K + +L L D +TF Sbjct: 3 SFRKRKDKWEYRIRYKEMGKYKETSKGGFKTKKEAQLAAAKVEEKLATGGNLKD-SKITF 61 Query: 60 EEACLRWLEEKAD----KKSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMHNRK 114 E WL ++ + I L F +RLKD++ K ++ + + Sbjct: 62 NEYLYEWLNTYKKGNVAPRTYMVYEKNIRLHILPAFGELRLKDLTRIKYQKFINGLMEK- 120 Query: 115 TKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIK 174 S +T + L A + LEK P K Sbjct: 121 --------------------------YSKKTVETINVTMHHALDIAVNELGILEKNPTSK 154 Query: 175 IPAV------RNKRVRWLEKEEAKRLIDE-CPEP----LKSVVKFALATGLRKSNIINLE 223 I ++ ++ + +E ++ ++ E S+ F TGLR + L+ Sbjct: 155 IKLRTTRVTSKDDEIKCYDIDELQQFLNYVLKEKGGFKYFSLFMFLSRTGLRIGECLALQ 214 Query: 224 WQQIDMQRRVAWVN---------------PEESKSNRAIGVALNDTACKVLRDQIGKHHK 268 W+ +D + + ++N P ++KS++ ++L+ + L+ + +K Sbjct: 215 WEDVDFEEQKLFINKTLINTKRSEKILFGPPKNKSSK-RTISLDPSTISHLKKMKIEQNK 273 Query: 269 WVFVHTKAAKRADGTSTPAVR--KMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQ 326 V + K K + T + S L A ++ + H RHT A L+Q Sbjct: 274 QVLKNGKYYKDYNFVFTHEDNSCMLHPSSLKFLLEASKKGNFKYITLHGFRHTHAVHLLQ 333 Query: 327 SGVPLSVLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIFGDN 371 SG + + E G SI+M Y H+ + + D+ Sbjct: 334 SGANIKYVSERLGHSSIDMTANVYLHITKSMEETAVNQYDEFLKSR 379 >UniRef50_Q8ERR7 Hypothetical conserved protein n=1 Tax=Oceanobacillus iheyensis RepID=Q8ERR7_OCEIH Length = 378 Score = 247 bits (632), Expect = 5e-64, Method: Composition-based stats. Identities = 74/396 (18%), Positives = 137/396 (34%), Gaps = 57/396 (14%) Query: 5 RRNEIWYASYSLP--GGKRIKESL-GTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEE 61 ++ + + G R ++ L G K+ A++ K EL L + +F+ Sbjct: 11 KKGIRYLFIIDINQSGKARKQKKLSGFTRKKDAEDALKKLIIELENDGYL-EPSKESFQS 69 Query: 62 ACLRWLEEK----ADKKSLDSDKSRIEFWL---EHFEGIRLKDISEAKIYSAVSRMHNRK 114 W + + + I+ L F + DI+ +I Sbjct: 70 FLQHWFYTHYITSIKRTTHSNRDYLIKKHLIEDNPFAEKAISDITTEEIDYFYH------ 123 Query: 115 TKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIK 174 K ST K M+ A + W+ + PV+ Sbjct: 124 --------------------YKLGKGYSTSYIRKMHQMLHLSFAQAVK-WRKISYNPVVN 162 Query: 175 --IPAVRNKRVRWLEKEEAKRLIDECP-EPLKSVVKFALATGLRKSNIINLEWQQIDMQR 231 P V+ K+V K++ K+ ++ E L + A+ TG+RK ++ L+W I+M++ Sbjct: 163 TTPPRVQTKQVSIWSKDQVKQFLETSNLERLYILFLLAIYTGMRKGELLGLKWSDINMEK 222 Query: 232 RVAWVN------------PEESKS-NRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAK 278 ++ K+ + ++ L+ K + + + Sbjct: 223 ECIHIHRNLCYIQNQGYFFTTPKTVRSTRVIPISSLISDQLQCIKEKQQCEKELAGPSYE 282 Query: 279 RADGTSTPAVRKM--RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQE 336 D A+ K+ + + + A + RFHDLRHT AS LI GV + + Sbjct: 283 DNDLVICTALGKVQDPRNVTRVFERCIKNANVPKIRFHDLRHTHASILISEGVDIVKVSS 342 Query: 337 MGGWESIEMV-RRYAHLAPNHLTEHARKIDDIFGDN 371 G S + YAH+ PN E A + ++ Sbjct: 343 RMGHTSPKTTLDIYAHVVPNTDNEVATIFEKSLQNS 378 >UniRef50_C0N6F6 Site-specific recombinase, phage integrase family protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N6F6_9GAMM Length = 409 Score = 247 bits (631), Expect = 5e-64, Method: Composition-based stats. Identities = 82/400 (20%), Positives = 151/400 (37%), Gaps = 88/400 (22%) Query: 14 YSLPGGKRIKESLG-------TKDKRQAQELHDKRK----AELWRVEKLGDLPDVTFEEA 62 Y+ P G+R++ ++G ++ A+ L+ + K + + P + Sbjct: 50 YTAPDGRRLRYTMGNFPALSVPAARKMAETLYAQVKLGRDIQREKQTARDVKPVPKLGDF 109 Query: 63 C-LRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQ 121 +L K + H RL ++ I S S+ H Sbjct: 110 ISDTYLPWFIAHHKAPKAKLPFNQFK-HLFNKRLDKVTAWDIESWRSKRHKD-------- 160 Query: 122 KVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVR-- 179 +S T +++ +KA+ A +W+ +E+ P+ K+ + Sbjct: 161 ------------------GLSASTSNRYIGTLKAMFNRAV-EWEVIEQNPITKVKKQKSD 201 Query: 180 -NKRVRWLEKEEAKRLIDECP-----------------------------EPLKSVVKFA 209 +R+L +E +RL + + +V Sbjct: 202 NRAIIRYLSPDEEERLRASLRSRDRRLTQSNPFYADGRFTRLETILGGFQDHVHPMVLLL 261 Query: 210 LATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLR---DQIGKH 266 + TG+R+ + NL WQ +D+ + + SK+ + + LN A VL+ Q ++ Sbjct: 262 MNTGMRRGEMFNLRWQDVDLNNKRITIVGNTSKTGQTRYIPLNVEAFNVLQMWSKQTKRN 321 Query: 267 HKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQ 326 VFV + + +W R A I DFR HDLRH +AS L+ Sbjct: 322 AGHVFVGKNGKRFT-------------NIDKAWKVLLRDAKIHDFRLHDLRHHFASRLVS 368 Query: 327 SGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDD 366 +G+ L+ ++E+ G I+M RYAHLAP HL++ ++ Sbjct: 369 AGIDLNSVRELLGHSDIKMTLRYAHLAPAHLSDAVAVLNS 408 >UniRef50_D2BJR0 Site-specific recombinase, phage integrase family n=2 Tax=Dehalococcoides RepID=D2BJR0_DEHSV Length = 385 Score = 247 bits (631), Expect = 6e-64, Method: Composition-based stats. Identities = 65/402 (16%), Positives = 128/402 (31%), Gaps = 59/402 (14%) Query: 3 LFRR-NEIWYASYSL----PGGKRIKESLGTK-DKRQAQELHDKRKAELWRVEKLGDLPD 56 + +R N W + GK+I + K K A++ + Sbjct: 5 IKKRANGTWSIVVYMGRDPKTGKKIYQWQTVKGTKSHAEKELAALINRKNNGSFV-KPTK 63 Query: 57 VTFEEACLRWLEEKA----DKKSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMH 111 T WLE A ++ + + + I L + I + S+ Sbjct: 64 TTVGTFLESWLETYASCNTAPRTFERYSQIVRLHLTPNLGRIELTQLRPEHIQAYYSK-- 121 Query: 112 NRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAP 171 +S QT H ++ L A + W L + Sbjct: 122 ------------------ALSGGRVSGGGLSAQTVKHHHRVLSEALNHAVK-WGLLARNV 162 Query: 172 V--IKIPAVRNKRVRWLEKEEAKRLIDECPE-------PLKSVVKFALATGLRKSNIINL 222 + P + + + E+ L +E + P + + AL TG+R+ I+ L Sbjct: 163 AMAVDPPRPEKREMHTIAPEDMSVLFEEAAKMEKNSGLPYELIFMTALHTGMRRGEILAL 222 Query: 223 EWQQIDMQRRVAWVN------------PEESKS-NRAIGVALNDTACKVLRDQIGKHHKW 269 W ID+ + +V E K+ V++ + + L Sbjct: 223 RWSDIDLAKSKIYVRCSLQCLKNGEIIIREPKTPGSRRLVSMTPSLLEKLIIHKESSSAN 282 Query: 270 VFVHTKAAKRADGTSTPAVRKM--RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQS 327 + + K + ++ +RAG+ + R HDLRH+ A+ ++ + Sbjct: 283 MILQGKTLQGDSLVFAHFDGTPINPNTVSPAFAKIAKRAGL-NLRLHDLRHSHATLMLTA 341 Query: 328 GVPLSVLQEMGGWESIE-MVRRYAHLAPNHLTEHARKIDDIF 368 GV ++ E G ++ + Y+H+ P A+ + Sbjct: 342 GVHPKIVSERLGHSTVAFTLDTYSHVIPGLQDAAAKTFEKSL 383 >UniRef50_B7RVJ7 Site-specific recombinase, phage integrase family n=4 Tax=unclassified Gammaproteobacteria (miscellaneous) RepID=B7RVJ7_9GAMM Length = 392 Score = 246 bits (630), Expect = 7e-64, Method: Composition-based stats. Identities = 91/384 (23%), Positives = 142/384 (36%), Gaps = 59/384 (15%) Query: 8 EIWYASYSLPGGKRIKESLGTK---DKRQAQELHDKRKAELWRV-----EKLGDLPDVTF 59 + Y GGK ++G A++ KA++ E +T+ Sbjct: 45 GSYRLRYKSEGGKTAYVTIGRSCDISLAGARKRARHLKAQIELGADPQAEAKAKKQVLTW 104 Query: 60 EEAC-LRWLEE-KADKKSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMHNRKTK 116 +L K K+S +D RL I+ +++ + + Sbjct: 105 NAFFTDHYLPHVKQHKRSWKNDLEMHNLRISAFIGNKRLNKITRSEVQRFHASLVEED-- 162 Query: 117 EIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIP 176 +S T HL +I+ L A DW+ LE PV K+ Sbjct: 163 ------------------------LSPATADHHLKLIRQALNLAV-DWELLEANPVAKVK 197 Query: 177 AV--RNKRVRWLEKEEAKRLIDECPEP----LKSVVKFALATGLRKSNIINLEWQQIDMQ 230 N+ R+L EE +RL+ + +V+ F L+TG R S ++ EW ID + Sbjct: 198 LFNQDNQVERYLSDEEMQRLLKVLKTDSNRVVCNVILFLLSTGARVSEALSAEWSDIDRK 257 Query: 231 RRVAWVNPEESKSNRAIGVALNDTACKVLRDQ-IGKHHKWVFVHTKAAKRADGTSTPAVR 289 RV + SKS + V LND A VL H +FV + Sbjct: 258 NRVWVIQATNSKSKKKRSVPLNDVAIGVLDALDTEGKHDRLFVGKRG------------- 304 Query: 290 KMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRY 349 W AG+ED+R HDLRH++AS L+ +G L +Q+ G ++ RY Sbjct: 305 -PLTTINKVWFRIRSEAGLEDYRIHDLRHSYASLLVNAGHSLFEVQQALGHSDPKVTMRY 363 Query: 350 AHLAPNHLTEHARKIDDIFGDNVP 373 AHL+ L A D + + Sbjct: 364 AHLSKESLQRAANSASDKITEAME 387 >UniRef50_A6TLJ2 Phage integrase family protein n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TLJ2_ALKMQ Length = 382 Score = 246 bits (630), Expect = 8e-64, Method: Composition-based stats. Identities = 69/399 (17%), Positives = 138/399 (34%), Gaps = 61/399 (15%) Query: 2 SLFRRNEIWYASYS---LPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 S+ +R W + G ++ KE+ G K K +A K EL + + ++ Sbjct: 4 SVRKRGNTWSYRIDLGIVDGSRKQKETGGFKKKSEAHSALRKAIDELENTGGVFEPTTIS 63 Query: 59 FEEAC----LRWLEEKADKKSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMHNR 113 F + ++E + S + + I+ F ++ I+ + + +++ Sbjct: 64 FSDYLNYFIENYIEIHLRENSQRARQHIIKNHIRPAFGNYKIMQITSQALQNFITK---- 119 Query: 114 KTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV- 172 + K S + A + + A +W+++ P+ Sbjct: 120 -----------------------KSKAYSKNYISMIHATLSTAFKMAV-EWEFIRINPMT 155 Query: 173 -IKIPAVRN----KRVRWLEKEEAKRLIDECPE-PLKSVVKFALATGLRKSNIINLEWQQ 226 +K+P + K ++ L EE R + A TGLR + L+W Sbjct: 156 RVKVPKRDDQEMDKEIKTLSPEEVNRCAERLQGTHHYIPFMIAFHTGLRAGEVSALQWSD 215 Query: 227 IDMQRRVAWVNP-------------EESKSNRA-IGVALNDTACKVLRDQIGKHHKWVFV 272 ID ++ V + K+ + +A+ + +L+ K Sbjct: 216 IDFDNQMLSVTKRLDYSASKENWEFKPPKTRSSNRTIAIGNELITILKSHSINQKKNKLK 275 Query: 273 HTKAAKRADGTSTPAVRKMRID--SKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVP 330 + K D T ++ I R I DF FH LRHT A+ L+++G+ Sbjct: 276 YGKHYTENDFICTFENGEVVITKAIGRVSEIIIRDVKI-DFNFHMLRHTHATMLLEAGIN 334 Query: 331 LSVLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIF 368 V+QE G ++ + Y+H+ + + Sbjct: 335 PKVVQERLGHSTVSITLDTYSHITIEFQKTAVLEYEKYL 373 >UniRef50_B1JZG3 Integrase family protein n=1 Tax=Burkholderia cenocepacia MC0-3 RepID=B1JZG3_BURCC Length = 429 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 88/414 (21%), Positives = 157/414 (37%), Gaps = 94/414 (22%) Query: 9 IWYASYSLPGGKRIKESLGT---KDKRQAQELHDK---------------RKAELWRVEK 50 + ++ P GK+ ++ +G + +A+EL K + +VE Sbjct: 43 TYTVRWTKPDGKQGRKVVGYWPNMNPGEARELARKTIRDVDKKGDTTADVLERRRRQVEA 102 Query: 51 LGDLPDVTFEEACLRWLEEK--ADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVS 108 + T + A+ +S ++ +R F L + S + Sbjct: 103 QQIVSGHTLRDFIDTRYRVWMIANNRSGEATVTRAVRVFADFLDHPLNGFNPWMFESWRA 162 Query: 109 RMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLE 168 + K +ST T + LA ++ + A +W + Sbjct: 163 K--------------------------CLDKGLSTATTNRDLAALRGLFSRAV-EWGVVA 195 Query: 169 KAPV--IKIPAVRNKRVRWLEKEEAKRL---IDECPEP---------------------- 201 + P+ +K + +VRWL +E RL +D E Sbjct: 196 EHPMRTVKALKESSGKVRWLSDDEEDRLRIALDAREERERSARDSANVWRKARGYELLED 255 Query: 202 ---------LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALN 252 LK V +L TG+R+ ++ L W ++D++ + V+ E +KS + + LN Sbjct: 256 LRTVPFVDYLKPAVLLSLNTGMRQGELLKLRWGRVDLENSILTVSDETAKSGKQRHIPLN 315 Query: 253 DTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFR 312 D A L+ + ++ D +R D KT+W + A I+DFR Sbjct: 316 DEALTALKQWRQQQSRF-----------DVVFAGDSGAVRTDVKTAWARLLKDAQIQDFR 364 Query: 313 FHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDD 366 +HD+RH +AS L+ +GV L+ ++E+ G + M RYAHLAP H K+ Sbjct: 365 WHDMRHHFASRLVMAGVDLNTVRELLGHSDMTMTLRYAHLAPEHKAAAVAKLGR 418 >UniRef50_A8V435 Phage integrase family protein n=2 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V435_9AQUI Length = 324 Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats. Identities = 88/373 (23%), Positives = 157/373 (42%), Gaps = 60/373 (16%) Query: 1 MSLFRR-NEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKL--GDLPDV 57 M LF+R N I+Y + G KR SL TKDK AQ L ++ K E + + + + + Sbjct: 1 MRLFKRENGIYYVEF-ERGKKR---SLKTKDKALAQRLFNQLKREYLKGKIILLSEGKKI 56 Query: 58 TFEEACLRWLEEKADKKSLDS---DKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRK 114 E +LE + +S ++ + ++ +H I +K +++ + VS + Sbjct: 57 KLSEFIEEYLEWCRENRSDETFKKARYVLQKLKDHTGDIYIKALTKKHLDEYVSTLL--- 113 Query: 115 TKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVI- 173 + +S T H+ IK+ L A +W++++ P+ Sbjct: 114 -----------------------AQGISRTTINIHIRTIKSALTKAV-EWEYVQNHPLEG 149 Query: 174 -KIPAVRNKRVRWLEKEEAKRLIDECPEPLKSV-VKFALATGLRKSNIINLEWQQIDMQR 231 K V R+L E+ ++ + + + TG+R I L W+ ID+ R Sbjct: 150 YKQLKVHQTPPRFLLPEDIAKVEKVIDDEFWLFVFRLFVYTGMRLGEIHKLRWKHIDLNR 209 Query: 232 RVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKM 291 V V E++K+ ++ + ++ L + K V Sbjct: 210 NVIKV--EKTKTFQSRVIPIHPKLRAELEARTPAMGKVV------------------PYA 249 Query: 292 RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAH 351 + + + ++AG +D R HDLRHT+AS ++ +GV L +QE+ G +S YAH Sbjct: 250 KPTIEHKLKNCFKKAGFKDLRIHDLRHTFASLMVMAGVDLKTVQELLGHQSYRTTEIYAH 309 Query: 352 LAPNHLTEHARKI 364 L+P HL E +K Sbjct: 310 LSPQHLHEAIKKF 322 >UniRef50_Q6AMU1 Related to integrase/recombinase n=1 Tax=Desulfotalea psychrophila RepID=Q6AMU1_DESPS Length = 357 Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats. Identities = 81/383 (21%), Positives = 139/383 (36%), Gaps = 44/383 (11%) Query: 1 MSLFRR-----NEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLP 55 M+ F++ +W A + G ++S TK + QA + + Sbjct: 1 MATFKKRENKSGIVWEAHIRIKGHTPRRKSFPTKCRAQAWAVEYEALLRAKDAGDPRLAE 60 Query: 56 DVTFEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKT 115 ++ +EA ++ E+ +S H + D S A I A+ Sbjct: 61 QISLQEALDKYAEDSTAAGKKESTLDLESRATRHLTRLLGADRSLADIRPAL-------- 112 Query: 116 KEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKI 175 + + + S LA++ + A + W K PV I Sbjct: 113 -------------VAQYQLTRQKEGYSNSAIRTELAILSKMYNNARKIWGLNIKNPVNDI 159 Query: 176 PAVRNKR--VRWLEKEEAKRLIDEC----PEPLKSVVKFALATGLRKSNIINLEWQQIDM 229 V + R+L EAK ++DE V + TG+R S + L + I+ Sbjct: 160 TRVPPDKGNTRFLTTAEAKIVLDESKNIRNPKFYPFVLLLMHTGMRSSEVARLRPEDINF 219 Query: 230 QRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVR 289 + + E+KS V L A +VL+ + + F+ + D PA Sbjct: 220 E--TLSLRIHETKSGIPRSVPLTTKAAEVLQTVSPEATGYYFLKENHLNQKDIRLAPA-- 275 Query: 290 KMRIDSKTSWLSACRR-----AGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIE 344 + W S ++ I FR HDLRHT AS L+ +GV + + ++ G ++ Sbjct: 276 ---KAFSSCWRSLRKKMEASGHKIPHFRPHDLRHTAASHLLMAGVDIREVADILGHSTLA 332 Query: 345 MVRRYAHLAPNHLTEHARKIDDI 367 M RY HL + E KI+ + Sbjct: 333 MTMRYTHLLDSRRQETISKINHL 355 >UniRef50_C0QB98 Putative uncharacterized protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QB98_DESAH Length = 365 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 84/374 (22%), Positives = 150/374 (40%), Gaps = 46/374 (12%) Query: 5 RRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACL 64 R N+++ L GK +S A+++ K K + + + Sbjct: 28 RTNKLFKVRIKLSNGK--WKSKQVNTLELAKKVEAKFKTQSIEEDVFNIHRAPVIDGVWS 85 Query: 65 RWLEEKA-DKKSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQK 122 ++L + +K+S D+ R E H +G+++ I+ + + ++ M + T + Sbjct: 86 KYLTWASLNKRSWIDDRIRWELHISAHLKGMKMDKITPSHVQDILNHMATKDTPK----- 140 Query: 123 VQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKIPAVRN 180 + T + L +IK + + + + P ++ P N Sbjct: 141 ---------------GGHYAPATIKQVLVLIKRVFNWSMQQGLYQGGNPCKSVEAPMFDN 185 Query: 181 KRVRWLEKEEAKRLIDEC----PEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWV 236 + L+K + L+ E V+KFAL +G RK +++L W +D + + + Sbjct: 186 RINNPLDKSGLRSLMSVLDTWNNERAILVIKFALYSGKRKGEVLSLTWDSVDFENHLLTL 245 Query: 237 NPEESKSNRAIGVALNDTACKVLRDQIGKH-HKWVFVHTKAAKRADGTSTPAVRKMRIDS 295 +KS +A + LN+ +L +VF T Sbjct: 246 QAMNTKSKKAQSLPLNNHCMTILERCRKLKVSDYVFPSTLGN-------------YYNTF 292 Query: 296 KTSWLSACRRAGIEDFRFHDLRHTWASWLIQSG-VPLSVLQEMGGWESIEMVRRYAHLAP 354 +W +RAGI RFHDLRHT+AS+L SG V + L+E+ G +IEM +RYAHL Sbjct: 293 DETWKRIRKRAGIS-IRFHDLRHTYASYLASSGKVDIYTLKELLGHSTIEMTQRYAHLVN 351 Query: 355 NHLTEHARKIDDIF 368 L D++F Sbjct: 352 GVLKRAVCVADEVF 365 >UniRef50_A1AUY6 Phage integrase family protein n=2 Tax=Desulfuromonadales RepID=A1AUY6_PELPD Length = 402 Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats. Identities = 85/350 (24%), Positives = 149/350 (42%), Gaps = 41/350 (11%) Query: 32 RQAQELHDKRKAELWRVEKLGDLPDVTFEEACLR-WLEE-KADKKSLDSDKSRI-EFWLE 88 R A+ + + E+ D+TFEE + +L KA K++ D DK++I Sbjct: 85 RVAEHKALLARDKDPAAERGKVRADLTFEEFSTQHYLPHAKAHKQTWDDDKNQIERRLNP 144 Query: 89 HFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAK 148 +RL+ I+ + S+ R T T Sbjct: 145 ILGKLRLQAITPRDVAMVHSKEKERTTAC---------------------------TANH 177 Query: 149 HLAMIKAILRAAERDWKWLEKAPVIKIPAVRNK--RVRWLEKEEAKRLIDECPEPL---- 202 LA +K +L A + W LEK P + R R+L KEE + + + Sbjct: 178 LLATLKRMLNLAVK-WGLLEKNPAGGQEKFKEGPLRERYLSKEELPKFLKALEDQDDLLS 236 Query: 203 KSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQ 262 + ++ L TG R+ I++L W+ + + ++ ++K+ R+ V LN A +V++D Sbjct: 237 VAALRMLLYTGCRREEIMSLRWENVRLDEERIFL--PKTKNGRSRTVHLNARAKEVIQDL 294 Query: 263 IGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWAS 322 + + T+ ++ + + D + + AC AGI++FR HDLRHT+AS Sbjct: 295 QARKDQE--DRTRGSEYVFPSRQGTKKGYIYDLRKPFEKACLNAGIDNFRIHDLRHTFAS 352 Query: 323 WLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIFGDNV 372 + SG L +Q + G + I M +RYAHL + L + + ++F Sbjct: 353 MAVSSGADLYAVQRLLGHQDIAMTQRYAHLNADDLKKATEGVSEMFDRAA 402 >UniRef50_B0U2H0 Phage integrase n=4 Tax=Xylella fastidiosa RepID=B0U2H0_XYLFM Length = 276 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 109/310 (35%), Positives = 172/310 (55%), Gaps = 40/310 (12%) Query: 59 FEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEI 118 +++A LRWL EK+ K + D +++ + +F G +L I I Sbjct: 6 WDDAALRWLSEKSRKATAHEDAAKLRWLASYFAGKKLAAIDSDLILR------------- 52 Query: 119 WKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAV 178 + + S T ++LA+I++ILR A W W+++ P I + Sbjct: 53 --------------VATLKAAETSPSTANRYLALIRSILRRAFDIWLWIDRCPHISLFPE 98 Query: 179 RNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNP 238 KRVRWL +A+ L+ E P +++V FAL+TGLR++N++ L W Q+D+ R+V + Sbjct: 99 PTKRVRWLTSVQARSLLSELPLHQRAMVIFALSTGLRQANVLKLRWDQVDLVRKVLRIPA 158 Query: 239 EESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTS 298 +++K +AI + L+ A +VL+ Q G+H++WVF + R +R + + Sbjct: 159 DQAKGRQAIRIPLSLHALQVLQAQRGQHYEWVFTYC-------------GRSIRWVNTRA 205 Query: 299 WLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLT 358 W A +RAGI+DFR+HDLRHTWASW QSG PL VLQ++GGW+S MVRRYAHL P+H + Sbjct: 206 WHQALQRAGIQDFRWHDLRHTWASWHAQSGTPLYVLQDLGGWQSESMVRRYAHLTPSHYS 265 Query: 359 EHARKIDDIF 368 +A + + Sbjct: 266 AYAEAVTEFL 275 >UniRef50_C3IU95 DNA integration/recombination/inversion protein n=2 Tax=Bacillus thuringiensis RepID=C3IU95_BACTU Length = 392 Score = 245 bits (625), Expect = 3e-63, Method: Composition-based stats. Identities = 70/410 (17%), Positives = 143/410 (34%), Gaps = 70/410 (17%) Query: 5 RRNEIW----YASYSLPGGKRIKES-LGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTF 59 ++ W GKR ++ G K K++AQ + + E+ + + PD+ F Sbjct: 10 KQGYKWLLIAEIGIDPTTGKRKQKKVRGFKTKKEAQLAAARIEQEVANGTYINE-PDILF 68 Query: 60 EEACLRWLEEKADK---KSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTK 116 ++ WL + SL + + ++ F I++KDI++ +A++ +H+ Sbjct: 69 KDFVQEWLNIYSKSTKISSLRVRQKQSNKLVDFFANIKMKDITKKMYQTALNDLHD---- 124 Query: 117 EIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IK 174 K + T + I + A + + ++ P +K Sbjct: 125 ----------------------KGYAFNTLDGIHTAGRMIFKKAI-ELQIIKSNPTDNVK 161 Query: 175 IPAV---------RNKRVRWLEKEEAKRLIDECPEP----LKSVVKFALATGLRKSNIIN 221 +P K +++LEKEE + E +GLR ++ Sbjct: 162 LPRKVETVEDIENDKKAIKYLEKEELAHFLQVAKEKGLDNDYVFFSILAYSGLRAGELLA 221 Query: 222 LEWQQIDMQRRVAWVNPE--------------ESKS-NRAIGVALNDTACKVLRDQIGKH 266 L+W +D + + K+ + ++ K+L+ K Sbjct: 222 LKWTDVDFENNTIKITKTLYNPDNNSQHYHLLTPKTKGSIRTIKMDQGIMKLLKSHKAKQ 281 Query: 267 HKWVFVHTKAAKRADGTSTPAVRKMRID--SKTSWLSACRRAGI-EDFRFHDLRHTWASW 323 ++ T A + + + + I ++ H RHT S Sbjct: 282 NELKLYTRPQYVDQGFVITKASGYPEVMKMIQNRLKRLIKLSNITKNITPHSFRHTHTSL 341 Query: 324 LIQSGVPLSVLQEMGGWESIEMVR-RYAHLAPNHLTEHARKIDDIFGDNV 372 LI++GV + +Q+ G IE YAH+ N + ++K ++ V Sbjct: 342 LIEAGVGIKEIQQRLGHTDIETTMNIYAHMTKNMEEKASQKFSELMKGFV 391 >UniRef50_D1CFY4 Integrase family protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFY4_THET1 Length = 363 Score = 245 bits (625), Expect = 3e-63, Method: Composition-based stats. Identities = 68/374 (18%), Positives = 135/374 (36%), Gaps = 50/374 (13%) Query: 3 LFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEA 62 + +R + A + G ++ S+ K + + Q + A + + VT E Sbjct: 9 IIKRGNAYRAQVQING---VRHSITGKTRAEVQRKRRELLAAADQGI-MPARTRVTVAEF 64 Query: 63 CLRWLE---EKADKKSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEI 118 WLE + +L ++ + + I+L + A + S++ Sbjct: 65 LSHWLEIIKPQVRPATLADYQNSVRNHIVPALGTIKLTKLEPAHLQELYSQLL------- 117 Query: 119 WKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKIP 176 K +S +T I ++ A R W L + + P Sbjct: 118 -------------------AKGLSAKTVRNIHGTIHKAIKDAAR-WGMLPRNVADIARPP 157 Query: 177 AVRNKRVRWLEKEEAKRLIDECPE-PLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAW 235 V + ++ L E+ + L+ C + ++ A+ATG R+ ++ L W ID+QR V Sbjct: 158 KVSRQELQCLTPEQVRLLMQACAGTRYEPLLGLAIATGARQGELLGLRWADIDLQRGVVQ 217 Query: 236 VNPEESKSNR---------AIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTP 286 + + ++ V + + ++LR + + Sbjct: 218 ITRQLTRQGTFSEPKTSSGKRSVHVPVSTVELLRRHRSLQLQERLSAGDRWQDQGLVFAN 277 Query: 287 AVRKM--RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIE 344 + + +W ++AG+ FH LRHT AS L++ GV ++Q+ G I Sbjct: 278 TLGGPMDARNLIRAWHRILQQAGLPRMPFHSLRHTSASLLLRQGVSPRLIQQRLGHADIA 337 Query: 345 MV-RRYAHLAPNHL 357 + + YAHL + Sbjct: 338 VTLQVYAHLVEDMD 351 >UniRef50_B0PGN2 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0PGN2_9FIRM Length = 526 Score = 244 bits (624), Expect = 4e-63, Method: Composition-based stats. Identities = 86/405 (21%), Positives = 146/405 (36%), Gaps = 53/405 (13%) Query: 2 SLFRRNEIWY-----ASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPD 56 S+ +RN+ + Y G R K L K KR+ QE + + + + P+ Sbjct: 11 SVRQRNDGRWEGRVVIGYDEKGLPRTKNVLA-KTKRECQEKLKQLRETMTGSKTEKVRPE 69 Query: 57 VTFEEACLRWLEEKADKKSLDSDKSRIE-----FWLEHFEGIRLKDISEAKIYSAVSRMH 111 + F E W + + + ++ E + I L +++ + +RM Sbjct: 70 MPFGEWLDFWYQNYVKPQIRPTTQANYEAKIYQHIIPELGKIPLNQLAQKDLQQFYARMK 129 Query: 112 NRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAP 171 K +S A ++ L A ++ + P Sbjct: 130 TAG---------------RLIRTEQFGKGLSDSMVRGLHAACRSALEKAVQE-GLIRTNP 173 Query: 172 VI--KIPAVRNKRVRWLEKEEAKR-LIDECPEPLKSVVKFALATGLRKSNIINLEWQQID 228 + K+P R + ++ L +EE +R LI E + L TGLR+ ++ L+W +D Sbjct: 174 AVGCKLPPKRGREMQVLGREELQRFLIQAQAEGYFELFLLDLCTGLRRGELLALQWDDLD 233 Query: 229 MQRRVAWVNPE--ESKSNRAIGVA----------LNDTACKVLRDQIGK-HHKWVFVHTK 275 + VN + E K + V L +VLR +W+F Sbjct: 234 FRTGALTVNKQVYEVKGRLQVSVPKTRASIRRLVLPPGVVEVLRAYRETVDSRWMFPSP- 292 Query: 276 AAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQ 335 V + RAG + RFHDLRHT+A+ +++G+ + L Sbjct: 293 --------VKEDVPMTPGAVRRRLQIILERAGCKRIRFHDLRHTFATLSLENGMDVKTLS 344 Query: 336 EMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIFGDNVPNMSHSE 379 M G S Y H+ + +E A KID G+ V S E Sbjct: 345 AMLGHVSAATTLDIYTHVTGDMQSEAAAKIDRGLGNEVREESAQE 389 >UniRef50_D1A578 Integrase family protein n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1A578_THECD Length = 409 Score = 243 bits (622), Expect = 6e-63, Method: Composition-based stats. Identities = 68/410 (16%), Positives = 130/410 (31%), Gaps = 60/410 (14%) Query: 2 SLFRRNEIWYASYSLP----GGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDV 57 + +R W + G + K G + +A+ D+ + + R E + D + Sbjct: 21 GVMKRGSTWSYVIRVRDPETGVSKPKWVGGFVTEEEAKAARDEARVKARRGEYI-DRTTI 79 Query: 58 TFEEACLRWLEEKA---DKKSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMHNR 113 T + WLE A ++L + + + H +RL+ + A+I + Sbjct: 80 TVAQYLDEWLEAHAVEIKPRTLAGYHTMVRLYIKPHIGDLRLQAVRPAQITKLYRDLL-- 137 Query: 114 KTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVI 173 KP+S T + A++ A + + P Sbjct: 138 ------------------ASGGEGGKPLSVSTVMRVHAILHKAFADAVLVDELIPSNPAE 179 Query: 174 KIPAVR---NKRVRWLEKEEAKRLIDECPEP-LKSVVKFALATGLRKSNIINLEWQQIDM 229 + + + + + + E L + A TG R+ ++ L W +D+ Sbjct: 180 RAKRPKGLVREADGIWTPAQLRVFLQAVREHRLFAFYHLAAYTGARRGELLALRWSNVDL 239 Query: 230 QRRVAWV-----------NPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAK 278 + + +KS R+ V ++D VLR+ F +A + Sbjct: 240 DGKRITIGGSAGVVKGRRIEGTTKSGRSRVVTIDDETVAVLREHRKAQLAEQFQAGEAWR 299 Query: 279 --RADGTSTPAVRKMRIDSKTSW---LSACRRAG----------IEDFRFHDLRHTWASW 323 T + W + + R HDLRH A+ Sbjct: 300 GAEDGYVFTTERGEPIHPDSVGWLMTKTIRAYNNPPQGPKPAEPLPHARVHDLRHIHATT 359 Query: 324 LIQSGVPLSVLQEMGGWESIEMVRR-YAHLAPNHLTEHARKIDDIFGDNV 372 L+ +GVP+ V+ G + R YAH+ + A + V Sbjct: 360 LLLAGVPVHVVAARLGHADPAITLRVYAHVIRSAEVAAADVFAKVMSGAV 409 >UniRef50_B3E8B2 Integrase family protein n=1 Tax=Geobacter lovleyi SZ RepID=B3E8B2_GEOLS Length = 421 Score = 243 bits (621), Expect = 7e-63, Method: Composition-based stats. Identities = 92/407 (22%), Positives = 156/407 (38%), Gaps = 91/407 (22%) Query: 8 EIWYASYSLPGGKRIKESLGTKDK---RQAQELHDKRKAELWRV-----EKLGDLPDVTF 59 + + Y LPGGK+ + +G QA++ +K + EK TF Sbjct: 52 KTYLVRYRLPGGKQSRIIIGRHTLYTPAQARDKAEKILRNIKDGINPKVEKQHPKVSHTF 111 Query: 60 EEACLR----WLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKT 115 + W E A +K + R++ F + L +I+ + + Sbjct: 112 KSFLEDEYSPWAE--AQRKDGKATVKRLKSRFSDFLELPLTEITPLIVDKWRTGRLKDSK 169 Query: 116 KEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKI 175 + T + L IKA L A +W+ LE P+ K+ Sbjct: 170 R--------------------------PATCNRDLTAIKAFLSKAV-EWEHLEHHPLAKV 202 Query: 176 PAVRN---KRVRWLEKEEAKRLIDECPE-------------------------------- 200 ++ +VR+L +E KRL+ + Sbjct: 203 KPLKVDSVAKVRFLSADEEKRLLKALDDREEVARAERATANLWRKERGYPLYTDLNSVSF 262 Query: 201 --PLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKV 258 LK ++ +L TG+R + +L W +DM++ + V +++KS + V LN A Sbjct: 263 ADHLKPMILVSLNTGIRWGELASLAWDSVDMKKALVTVIGDKAKSGKTRHVPLNSIALNA 322 Query: 259 LRDQIGKHHKWV-FVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLR 317 L+D + V F K D + SW + A I++FR+HD+R Sbjct: 323 LKDWKKQSSGDVVFPGRDGKKTLD------------NVNKSWKAVLDAAQIKNFRWHDMR 370 Query: 318 HTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKI 364 H +ASWL+ +GV L+ ++E+ G ++M RYAHLAP H + Sbjct: 371 HHFASWLVMAGVDLNTVRELLGHSDLKMTLRYAHLAPEHKAAAVGLL 417 >UniRef50_A8L4Q7 Integrase family protein n=9 Tax=Actinomycetales RepID=A8L4Q7_FRASN Length = 477 Score = 243 bits (621), Expect = 8e-63, Method: Composition-based stats. Identities = 76/395 (19%), Positives = 144/395 (36%), Gaps = 55/395 (13%) Query: 2 SLFRR--NEIW--YASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDV 57 +LF+R + +W A GKR ++++ K +++ +E K + + Sbjct: 92 ALFQRASDGLWVGRADLGWVDGKRSRKTVYGKTEKECREKLTKVQRAAELGVNVT-AERR 150 Query: 58 TFEEACLRWLE----EKADKKSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMHN 112 T WL+ + +L + + I + ++L ++ + V+ Sbjct: 151 TVAVWLGEWLDIKEGDGTRASTLRAYRWLINMHIVPVIGRVQLDKLTPLDVRRLVA---- 206 Query: 113 RKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV 172 + +S + ++I+ L AER + + Sbjct: 207 ----------------------SAKKSGLSAGSVRHVHSLIRNALAEAER-LDLVARNVA 243 Query: 173 --IKIPAVRNKRVRWLEKEEAKRLIDECP-EPLKSVVKFALATGLRKSNIINLEWQQIDM 229 +K P ++ VR L EEA+RL++ E L++V L GLR+ I+ L W +D+ Sbjct: 244 KAVKAPPTPHREVRALRPEEARRLVEVLRGERLEAVFACGLMLGLRRGEILGLRWSDVDL 303 Query: 230 QRRVAWVNPEE-----------SKSNRA-IGVALNDTACKVLRDQIGKHHKWVFVHTKAA 277 V +K+ R+ + + +LR A Sbjct: 304 DGATLHVRQTLQRVDGSLMFVPAKTERSHRRLPIPPKLVTILRRHRATQTAERTGLGDAW 363 Query: 278 KRADGTSTPAVRKM--RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQ 335 T ++ + + R+AG+ R HDLRH +AS L GVP + Sbjct: 364 TETGLVFTSSIGTPLEPRNVNRRFDVLRRQAGLPWLRLHDLRHAFASMLFAEGVPARTVM 423 Query: 336 EMGGWESIEMVR-RYAHLAPNHLTEHARKIDDIFG 369 E+ G +I++ Y H+ P + ++D IF Sbjct: 424 ELLGHSTIQLTMNTYTHVMPETQRDAVGRLDRIFN 458 >UniRef50_A6FXR9 Phage integrase n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6FXR9_9DELT Length = 421 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 86/394 (21%), Positives = 134/394 (34%), Gaps = 62/394 (15%) Query: 12 ASYSLPGG--KRIKESLGTKDKRQAQELHDKRKAELWRV---------------EKLGDL 54 LP G KR+++ + KR AQ + +AEL K Sbjct: 4 VCIKLPDGRTKRVRKVSPVQTKRAAQAFERETRAELMAGLFDEENNHGPNGSGRRKAKPQ 63 Query: 55 PDVTFEEACLRWLEEKADKKSLDS----DKSRIEFWLEHFEGIRLKDISEAKIYSAVSRM 110 T E ++ +A S L F +RL I I Sbjct: 64 AVPTLAEFAPEFMAYQATLNKATELASKRSSLKNHLLPVFGDLRLDQIDARAIDRY---- 119 Query: 111 HNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKA 170 K +++ + + + +T HL ++ LR A++ W L++ Sbjct: 120 ---KMRKLSPEHAATVASTRRRAGE----GLKPKTINNHLMVLSRALRVAQK-WGVLDRV 171 Query: 171 PVIKIPAVRNKRVRWLEKEEAKRLIDECPEP---LKSVVKFALATGLRKSNIINLEWQQI 227 P I++ V + +L+ EEA+R + E V A TGLR ++ L+W+ + Sbjct: 172 PEIELLRVTKQPFDFLDFEEAERYLAAAREHYPDWHVFVLVAARTGLRVGELLALQWKHV 231 Query: 228 DMQRRVAWVNPEES--------KSNRAIGVALNDTACKVLRDQI-------GKHHKWVFV 272 + R V + KS +A V L + L VF Sbjct: 232 RLAGRTLRVELSYTRAGGVSSPKSGKAREVPLTWDVARALEVHREVLGAKARARDALVFP 291 Query: 273 HTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLS 332 + R + A + H LRHT+AS + GVP+ Sbjct: 292 NADG-----------ERGSLRSVGHFVSRIAKAAKLRHVHPHMLRHTFASHAVMRGVPMR 340 Query: 333 VLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDD 366 V+QE G SIEM RYAHLA + +I Sbjct: 341 VVQEWLGHASIEMTMRYAHLAEGIGLDLIDRIAP 374 >UniRef50_A4J1T6 Phage integrase family protein n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J1T6_DESRM Length = 383 Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 74/390 (18%), Positives = 148/390 (37%), Gaps = 49/390 (12%) Query: 5 RRNEIWYASYSLPGG-----KRIKESLGTK-DKRQAQELHDKRKAELWRVEKLGDLPDVT 58 +R++ + G KR + G K K++A++ + AE + + + Sbjct: 7 KRHKSSWTIIIDLGKDPITNKRKRMVRGFKGTKKEAEKEMARLIAEYETGQYI-EPSKTC 65 Query: 59 FEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEI 118 + LRWLE+ + +E K I + + ++ + Sbjct: 66 LGDYMLRWLEDYGKPNLAPTTYYSYSKIVE-------KHIIPSIGSIIIEKLQPMHLQRY 118 Query: 119 WKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKIP 176 + QK+Q +S +T H ++K L A + W+ L + P ++ P Sbjct: 119 YSQKLQ---------------TLSNRTVQYHHRVLKEALSHAVQ-WQLLNRNPADAVQAP 162 Query: 177 AVRNKRVRWLEKEEAKRLIDECPEP-LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAW 235 + K + + R+I + ++ A+ TG+R+ ++ L WQ +D + + + Sbjct: 163 KNKQKEIELPDLSNIDRMIQASKDHPDHIIIISAVFTGMRRGELLGLRWQDLDFDKNLLY 222 Query: 236 VN------------PEESKSNRAIG-VALNDTACKVLRDQIGKHHKWVFVHTKAAKRADG 282 V E KS ++ + + +L+D K + F + D Sbjct: 223 VRNTLQRLPDKGKFFTEPKSKKSRRQIIIPHFLTNLLKDHRKKQLEERFKLGHLYQDHDL 282 Query: 283 TSTPAVRKM--RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGW 340 + + + G+ RFHDLRH A+ L+ + +QE G Sbjct: 283 VFPRPDGTPADPGTVSHRFKALVDKIGLSGLRFHDLRHFHATLLLAENINPKKVQERLGH 342 Query: 341 ESIE-MVRRYAHLAPNHLTEHARKIDDIFG 369 ++I + Y+HL P+ E A K+++I+G Sbjct: 343 QTISLTLDVYSHLIPSMQNEIAEKLEEIYG 372 >UniRef50_C2NSI2 DNA integration/recombination/invertion protein n=2 Tax=Bacillus cereus group RepID=C2NSI2_BACCE Length = 382 Score = 241 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 72/366 (19%), Positives = 131/366 (35%), Gaps = 52/366 (14%) Query: 30 DKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRWLEE---KADKKSLD-SDKSRIEF 85 KR+A + KA++ E+ DL +T+ W++E + + + Sbjct: 44 TKREAHDAMLILKAKMLSGER-SDLSKLTYAAYVDEWMKERTFHLQETTYEIHKTYIANV 102 Query: 86 WLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQT 145 ++++I + V+ + S T Sbjct: 103 IKPRLGHFQMREIEPIHMQKFVNELAIDI-------------------------GYSPAT 137 Query: 146 KAKHLAMIKAILRAAERDWKWLEKAPVIKI--PAVRNK-RVRWLEKEEAKRLIDECPE-- 200 ++ A L+ A + K +++ P I I P +R + EE I+E Sbjct: 138 VHLIYRIVSASLKKA-KVLKLIDENPTIGITLPKLRKTSEINVWTLEEVNHFINEGKNVY 196 Query: 201 ---PLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRA----------I 247 + AL TG+R+ I+ L W+ ID + R+ ++ ++S + Sbjct: 197 RSTRMYICCVIALLTGMRQGEIMGLRWKDIDFENRIIYIRQTLTQSGKIKVGAKNNASIR 256 Query: 248 GVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKM--RIDSKTSWLSACRR 305 V L K H K + + + + + + + Sbjct: 257 NVHFPIKLIGELELHRETVKKERLYHGKDYEDNNLVICARKGNPLIPKNGRIEFYNLTEK 316 Query: 306 AGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMV-RRYAHLAPNHLTEHARKI 364 G+ RFHDLRHT A+ LIQ V + ++ E G I+ Y+H+ PN E A K+ Sbjct: 317 LGLPKIRFHDLRHTHATMLIQQNVNVKLISERLGHTDIQTTLNTYSHVLPNMQREVADKL 376 Query: 365 DDIFGD 370 D +FG+ Sbjct: 377 DVMFGE 382 >UniRef50_D1XEM4 Integrase family protein n=1 Tax=Streptomyces sp. ACTE RepID=D1XEM4_9ACTO Length = 435 Score = 241 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 66/412 (16%), Positives = 148/412 (35%), Gaps = 34/412 (8%) Query: 2 SLFRRNEIWY---ASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 ++++R + + PG R + + + +A ++ A R + + Sbjct: 20 TVYQRKDGRWEAAGYVLAPGNTRKRVRVYGTTRTEALAKLTEKIATSNRGVPVPSAQG-S 78 Query: 59 FEEACLRWLEEKADKKSLDSDKSRI-----EFWLEHFEGIRLKDISEAKIYSAVSRMHNR 113 WLE A + ++ +R + + +L ++ + + ++++ Sbjct: 79 VSAYLTYWLEAVAVHQLRENTHTRYTTCVNQHLIPGLGKKKLAKLTAKDVRTWLNQLRTT 138 Query: 114 KTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVI 173 + + K +S T A +++K+ L A R+ + + + Sbjct: 139 CQCSVRAIDAHRDQPRCCAAGTCCSKRLSPLTLAYIHSVLKSALEHAVREEE-ITRNVAR 197 Query: 174 KIPA--VRNKRVRWLEKEEAKRLIDEC-PEPLKSVVKFALATGLRKSNIINLEWQQIDMQ 230 + R +R L +EA++ + + L ++ + AL GLRK ++ L+W+ +D+ Sbjct: 198 NVRTGTPRPRRFEPLTADEARQFLAAVRNDRLFALYELALRAGLRKGELLGLQWKDLDLH 257 Query: 231 RRVAWVNPEE------------SKSN-RAIGVALNDTACKVLRDQIGKHHKWVFVHTKAA 277 A + +K+ +AL ++ + Sbjct: 258 NGTASIRRTLQRTQTGGLTALPTKTRASERRIALPSECIHSFKEHRAVQEGERKAAAEGW 317 Query: 278 KRADGTSTPAVRKM--RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQ 335 K + + S+ + RAG+ RFHDLRH+ A+ L++ GV L V++ Sbjct: 318 KDNGLVFRTSAGGPIDPANLNRSFHTLLERAGLRRIRFHDLRHSTATLLLEQGVELVVIK 377 Query: 336 EMGGWESIEMVRR-YAHLAPNHLTEHARKIDDIF-----GDNVPNMSHSEIM 381 E+ G I + YAH+ + + + P+ S + Sbjct: 378 ELLGHAHIGVTATVYAHVRLRLQRQAVETLSSTLAGPTNAEAAPDGSEKQHP 429 >UniRef50_A8MGA1 Integrase family protein n=7 Tax=Clostridiaceae RepID=A8MGA1_ALKOO Length = 380 Score = 241 bits (615), Expect = 4e-62, Method: Composition-based stats. Identities = 64/406 (15%), Positives = 125/406 (30%), Gaps = 67/406 (16%) Query: 2 SLFRRNEIWYASYS---LPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 + +R WY Y + G + E G K K++A ++ +L + +T Sbjct: 4 GVRKRGSSWYYYYDAGSVDGKRNKIERKGGKTKKEALNALNEALTKLGSG--YVEPKKIT 61 Query: 59 FEEACLRWLEEKADKKSLDSDKSRI-----EFWLEHFEGIRLKDISEAKIYSAVSRMHNR 113 E W+E + + +R + + L ++ + + Sbjct: 62 VHEYMTDWVENYIKENRKLNTYNRYKEIYNRHLKPYIGHLGLSEVKPIHLDQML------ 115 Query: 114 KTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAP-- 171 + K +S T + + A + + + P Sbjct: 116 --------------------LGEKKKGLSGSTLQNIYGTLNSAFNRAVK-LQIMYDNPLR 154 Query: 172 VIKIPAVRNKRVRWLEKEEAKRLIDECP-EPLKSVVK-----FALATGLRKSNIINLEWQ 225 I P L EE +L D + L GLR+ + LEW+ Sbjct: 155 FIDRPKRDKFVASTLAVEEIGQLFDALDTSKYNDYIMSLGLKIVLELGLRRGELAGLEWK 214 Query: 226 QIDMQRRVAWV-----------NPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHT 274 ID +++ + + K++ + ++ ++L+ K + Sbjct: 215 YIDFNKQIITIANNLVDTYTEVSLTTPKTDERRDLYVSKGLMQLLKQHKVLQTKNRMKYR 274 Query: 275 KAAKRADG---------TSTPAVRKMRIDSKTSWLSACRRAGI-EDFRFHDLRHTWASWL 324 K + T + ++ + RFHDLRHT A+ L Sbjct: 275 PHYKENEFNGNVCDFVMTWEDGTYVHPNYYTVKFNKLLKKVNFDRNIRFHDLRHTNATLL 334 Query: 325 IQSGVPLSVLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIFG 369 +Q G+ V+Q G I Y+H+ + K+ +I G Sbjct: 335 LQQGIDFKVIQTRLGHSDINTTLNIYSHVNVEMQKKATEKLIEILG 380 >UniRef50_Q3SHX2 Site-specific recombinase, phage integrase family n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SHX2_THIDA Length = 352 Score = 241 bits (615), Expect = 4e-62, Method: Composition-based stats. Identities = 76/379 (20%), Positives = 143/379 (37%), Gaps = 53/379 (13%) Query: 2 SLFRRNE-IWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKL--GDLPDVT 58 ++ +R E W A G ++ +++A+ + ++E+ R + ++ T Sbjct: 3 TIRKRGELQWQAIVKRKGYPLQSKT--WNTRKEAEAWARQIESEMDRGVFVSRAEVERTT 60 Query: 59 FEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEI 118 ++ R+ E K + +H L +S I + Sbjct: 61 LQDLIGRYRIEVLPNKRGKHFGPALRVLEQHLGKYSLAALSPKLIAGFRDK--------- 111 Query: 119 WKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKW-LEKAPV--IKI 175 +S T K + ++ ++ A ++W L P + Sbjct: 112 -----------------RTKAGLSASTVKKEINLLSKLIDLAGKEWGVALPANPCAMVSR 154 Query: 176 PAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAW 235 P +N R R L+ EE K L+ C + + + +FAL T R ++ L W +D +RV Sbjct: 155 PVEKNARDRRLQPEEEKYLLTACEQHVALLSRFALETAARLGELLALRWADVDTTKRVMV 214 Query: 236 VNPEE---SKSNRA-IGVALNDTAC---KVLRDQIGKHHKWVFVHTKAAKRADGTSTPAV 288 + + +KS A V L+ A L+ VF +A + + Sbjct: 215 IRGIDERGTKSGDALRAVPLSPAAVSVLDELKKLPRGIDGRVF----YWWKASDSFSKTW 270 Query: 289 RKMRIDSKTSWLSACRRAG-------IEDFRFHDLRHTWASWLIQSGV-PLSVLQEMGGW 340 + + S+++ C +AG + D RFHDLRH S L + GV + + G Sbjct: 271 GRALTRAHASYIADCEKAGGEPDQAFLIDLRFHDLRHEATSRLFEKGVFDSMEVASITGH 330 Query: 341 ESIEMVRRYAHLAPNHLTE 359 +++ M++RY HL L + Sbjct: 331 KTLAMLKRYTHLRAEDLAK 349 >UniRef50_Q7MKK6 Integrase n=6 Tax=Proteobacteria RepID=Q7MKK6_VIBVY Length = 402 Score = 240 bits (614), Expect = 5e-62, Method: Composition-based stats. Identities = 89/394 (22%), Positives = 155/394 (39%), Gaps = 69/394 (17%) Query: 9 IWYASYSLPGGKRIK--ESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRW 66 +Y Y + G +R S QA++L ++ ++ E + D Sbjct: 41 KYYLYYRIHGKQRNFLLGSANALTPAQARDLAKEKAGQVAAGEDVQDT------------ 88 Query: 67 LEEKADKKSLDSDKSRIEFWLEHFEGIRLK------DISEAKIYSAVSRMHNRKTKEIWK 120 +A K+ + + +F EH+ + S I S + + EI Sbjct: 89 -RHEAKKREQRNSLTLSKFLEEHYSAYLMSINAKTAQKSLMCIQSNFKHLSTKPLVEITA 147 Query: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKIPAV 178 +Q + + T + ++A+ A +W +++ + +KIP + Sbjct: 148 WDIQQWV------AERSKAGRAPATISYAYNRLRAVFNRAV-EWGFIDSHSLDNVKIPRI 200 Query: 179 RNKRVRWLEKEEAKRLIDECPEP---------------------------LKSVVKFALA 211 NKR+R+L E L++ L+ ++ AL Sbjct: 201 DNKRIRYLSVSEEAALLESLKARDARLKDEALQRYGKRAQRLVSQRYVDFLEPLIVLALN 260 Query: 212 TGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVF 271 TG+RK I++L+W I+M+ R + E +KS + LN+T +L+ ++ Sbjct: 261 TGMRKGEILSLKWSHINMEDRYLTIRSENAKSKNKRTIPLNNTVYTMLQAWHEQNPDTEL 320 Query: 272 VHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPL 331 V + K D + W S + AGIE+FRFHDLRH +AS L+ L Sbjct: 321 VFERNGKPLD------------SYQYQWESLLKEAGIENFRFHDLRHHFASKLVMKEADL 368 Query: 332 SVLQEMGGWESIEMVRRYAHLAPNHLTEHARKID 365 +V++E+ G ++M RYAHLAP H I Sbjct: 369 NVVRELLGHADLKMTLRYAHLAPEHKASAVNLIG 402 >UniRef50_Q3Z6H5 Site-specific recombinase, phage integrase family n=1 Tax=Dehalococcoides ethenogenes 195 RepID=Q3Z6H5_DEHE1 Length = 386 Score = 240 bits (613), Expect = 7e-62, Method: Composition-based stats. Identities = 65/400 (16%), Positives = 138/400 (34%), Gaps = 62/400 (15%) Query: 2 SLFRRNEIWYASYSL----PGGKRIKESLGTK-DKRQAQELHDKRKAELWRVEKLGDLPD 56 ++ +R + SL GK + K +K+ A++ ++ + + Sbjct: 4 AIIKRGNSYRVKISLGKDSASGKYLSHYETVKGNKKAAEKRLNELIHQFDSGTFVKPGKS 63 Query: 57 VTFEEACLRWLEEKADKKSLDSDKSRI-----EFWLEHFEGIRLKDISEAKIYSAVSRMH 111 T E WL + + + I + ++ + + Sbjct: 64 -TMYEYMQSWLNDYCKPNLSPRTVELYSYISTKHIIPTLGNIPIVELKPQHLQHLYAD-- 120 Query: 112 NRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKA- 170 + +S +T ++ L+ A + L + Sbjct: 121 ------------------------KQSFGLSNRTVQIIHVVLHKALKNAVKT-GLLSRNI 155 Query: 171 -PVIKIPAVRNKRVRWLEKEEAKRLIDECPE-PLKSVVKFALATGLRKSNIINLEWQQID 228 + P ++ ++ + + + + L+++ E P ++ +L TG+R++ + L W ID Sbjct: 156 AEAVDAPKIQRHEMQVMNESDMQVLLEKAKETPYYALFYTSLFTGMRRAECLALRWSDID 215 Query: 229 MQRRVAW----------------VNPEESKSNRAIG-VALNDTACKVLRDQIGKHHKWVF 271 + + + +E K++++ +AL+ + +LR+ + Sbjct: 216 LILCQVYVLRSMQYVQDADLGKRITFKEPKTSKSRRQIALSPSNVIILREHYQDQSELRK 275 Query: 272 VHTKAAKRADGTSTPAVRKMR---IDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSG 328 +W+ RR G+ R HD RHT AS L++ G Sbjct: 276 TLNLPGLTDSDLVFSHYDGSPLLPNSVTHAWIKLARRCGLNGIRLHDARHTHASLLLKQG 335 Query: 329 VPLSVLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDI 367 V ++QE G SI++ Y+H+AP A K DDI Sbjct: 336 VHPKIVQERLGHGSIQITLDTYSHVAPGLQQAAASKFDDI 375 >UniRef50_C1SNQ2 Site-specific recombinase XerD n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SNQ2_9BACT Length = 342 Score = 240 bits (613), Expect = 8e-62, Method: Composition-based stats. Identities = 75/370 (20%), Positives = 133/370 (35%), Gaps = 49/370 (13%) Query: 1 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFE 60 M L++ + Y KR SLGTK+K +A+ + K ++ + T Sbjct: 1 MRLWKHSNGTYYVIIDRNHKR---SLGTKNKAEAERIFKALKKSDFQKKIADLEKTETIS 57 Query: 61 EACLRWLEEKADKKSLDSDKSR---IEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKE 117 E LE+ KK + S + + L +++ + + Sbjct: 58 EFFADCLEDYKYKKEKATYTSMSYSLNAFEGFIGEKLLNGVTKKDLSDFTTH-------- 109 Query: 118 IWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKI 175 + + + IKA A +W+ L + P+ K Sbjct: 110 ------------------RLKAGYAKTSINIDIRNIKAAFSKAV-EWEKLAQNPLNGFKQ 150 Query: 176 PAVRNKRVRWLEKEEAKRLIDEC-PEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVA 234 + ++L ++ + + PL+ F + TG R+S + L W ID R V Sbjct: 151 LKIDKNLPKFLTFDDLDKFANILGDNPLRHAFFFYVLTGCRRSEALVLTWDDIDFTRMVV 210 Query: 235 WVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRID 294 + ++K++ A + + D+ ++L K ++F D + Sbjct: 211 HIR--KTKNHEARDIPICDSLYELLNGITPKQ-GYLFPGKIKGTHLD----------KDT 257 Query: 295 SKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAP 354 + AG D R HDLRHT+AS L SG L ++++ G I YAHL Sbjct: 258 MTHNIKDCLTEAGFPDMRLHDLRHTFASLLALSGETLQTIRDLLGHSDIRTTEIYAHLTA 317 Query: 355 NHLTEHARKI 364 +HL K+ Sbjct: 318 DHLKAAVNKL 327 >UniRef50_A6P1V8 Putative uncharacterized protein n=2 Tax=Bacteroides capillosus ATCC 29799 RepID=A6P1V8_9BACE Length = 409 Score = 240 bits (613), Expect = 8e-62, Method: Composition-based stats. Identities = 72/401 (17%), Positives = 145/401 (36%), Gaps = 53/401 (13%) Query: 2 SLFRR-NEIWYASYS----LPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPD 56 S+ ++ N W Y+ G+ I++S+ + + + +E K + R + D Sbjct: 11 SIRKKPNGRWEGRYTQGIDPNTGRAIQKSVSARTQAECKEKLAKAIRD-NRGIPVNHNED 69 Query: 57 VTFEEACLRWLEEKADK----KSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMH 111 T E C W E + + + ++ IE + G++LK ++ +I + Sbjct: 70 YTVAEWCRLWFETYSKPVIRPNTAKTYENMIENHIVPAIGGVKLKRLTAIQIQKMYND-- 127 Query: 112 NRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAP 171 + + +S T + ++ + L+ A ++ + + P Sbjct: 128 ------------SKTNGRVQRFEKKTDTALSGSTVRRIHMVLSSALKQAVKE-RIIPYNP 174 Query: 172 VI--KIPAVRNKRVRWLEKEEAKRLIDECPEP-LKSVVKFALATGLRKSNIINLEWQQID 228 +IP K + + E+ + E + + + L++GLR+ ++ L W ++ Sbjct: 175 CDNCRIPPKEKKEMAIIPSEKLGVYLSEAEKYGVLPMFFLELSSGLRRGELLALRWDDLN 234 Query: 229 MQRRVAWVNP-------------EESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTK 275 ++ R+ V+ ++K+ VAL+ A +L + +H Sbjct: 235 VKDRILSVSKQVTRIDGELVITEPKTKN-SVRKVALSQQAVDILVREHEQHPD------- 286 Query: 276 AAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIE-DFRFHDLRHTWASWLIQSGVPLSVL 334 + +AGIE RFHDLRHT+A+ + SGV + L Sbjct: 287 -NPILFPSPRTGGYWSPDAVSRINRKLLAKAGIEERVRFHDLRHTFATMALSSGVDVKTL 345 Query: 335 QEMGGWESIE-MVRRYAHLAPNHLTEHARKIDDIFGDNVPN 374 M G S + Y H+ + A KI Sbjct: 346 SSMLGHYSAGFTLDTYTHITNDMQRGAAEKIGGFMETATAK 386 >UniRef50_C1CZ59 Putative Tyrosine recombinase xerC-like protein n=1 Tax=Deinococcus deserti VCD115 RepID=C1CZ59_DEIDV Length = 379 Score = 240 bits (612), Expect = 9e-62, Method: Composition-based stats. Identities = 71/393 (18%), Positives = 131/393 (33%), Gaps = 54/393 (13%) Query: 4 FRRNEIWYASYSL---PGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFE 60 + W +L P GK+ + K + +A+E +E + +T Sbjct: 14 RKDGSGWGGYVTLGYGPDGKQQRRYFSAKTQAEAREKLQALVSERNGGCLSSE--TLTLA 71 Query: 61 EACLRWLEEKADKKSLDSDKSRIE----FWLEHFEGIRLKDISEAKIYSAVSRMHNRKTK 116 RWL K ++ +S ++L ++ I VS + Sbjct: 72 AYLDRWLTHKQRDVKFNTHRSYEMTARVHIKPRLGKVQLDKLTPLHIEELVSALLAE--- 128 Query: 117 EIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IK 174 S + + +++ L A R W+ + + + Sbjct: 129 -----------------------GQSAKVALGCVKLLRTALTQAVR-WQLVGRNVAQSVT 164 Query: 175 IPAVRNKRVRWLEKEEAKRLIDECPEP-LKSVVKFALATGLRKSNIINLEWQQIDMQRRV 233 P K ++ +EA R + E L ++ ALATG+R+ ++ L+W+ I+M Sbjct: 165 PPKHTPKEMQVWTPDEASRFLAVAREHRLYALFYLALATGMRRGELLGLKWESINMLAGT 224 Query: 234 A-----------WVNPEESKSN-RAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRAD 281 V E K+ +AL+ + LR + + Sbjct: 225 LVVQHNLIDRVSSVTLETPKTRASRRTIALSPDTVEALRAHRHSQWLEQCKAGEKWQEHG 284 Query: 282 GTSTPAVR--KMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGG 339 V + ++ C +A + R HDLRHT AS LI++ VP V+ + G Sbjct: 285 MVFPSDVGTLMFPANLMGAFRRLCAKARVPAIRLHDLRHTSASLLIRANVPPKVVADRLG 344 Query: 340 WESIEMVRR-YAHLAPNHLTEHARKIDDIFGDN 371 R YAH+ A + ++ + Sbjct: 345 HTDPGFTLRVYAHVYEEQRRAAALPLGEMLREA 377 >UniRef50_C9XJT1 Integrase n=6 Tax=Clostridium difficile RepID=C9XJT1_CLODC Length = 380 Score = 240 bits (612), Expect = 9e-62, Method: Composition-based stats. Identities = 70/391 (17%), Positives = 154/391 (39%), Gaps = 54/391 (13%) Query: 3 LFRRNEIWYASY---SLPGGKRIKESLGTKDKR-QAQELHDKRKAELWRVEKLGDLPDVT 58 + +RN+ + GKR ++++GT DK+ +A + ++ K L+ L ++T Sbjct: 15 IRKRNKNYVVYLEFEDEKTGKRKQKNMGTFDKKREASKRLNEVKESLYNDGFLVP-SEIT 73 Query: 59 FEEACLRWLEEKADKKSLDSDKSRI----EFWLEHFEGIRLKDISEAKIYSAVSRMHNRK 114 E L +L + ++ SL + + + + +++D+ I + + ++ + Sbjct: 74 VSEFLLDFLNKYSENISLATYNNYVSICKNYINPSIGKYKIQDLHPVHIQNYIDKLSYK- 132 Query: 115 TKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV-- 172 ++ Q+ H+ ++K ++ A R K +++ + Sbjct: 133 --------------------------LNPQSIKIHINILKLAIKRAYR-LKLIKENVMDS 165 Query: 173 IKIPAVRNKRVRWLEKEEAKRLIDECPE-PLKSVVKFALATGLRKSNIINLEWQQIDMQR 231 I+ P + + ++E+ +L+D ++ + A+ GLR S ++ L W ID + Sbjct: 166 IEAPRYKKFKNEIYDREQMIKLLDLAKNTEMELPINLAIGLGLRISEVLGLTWDNIDFEE 225 Query: 232 RVAWVNP-----------EESKSNRA-IGVALNDTACKVLRDQIGKHHKWVFVHTKAAKR 279 VN +E K+ + ++ +L++ K +K + + Sbjct: 226 NTITVNKITSRINGSVILKEPKTESSVRKISSPKELMSLLKEYKIKQNKNLLKSSIRNNN 285 Query: 280 ADGTSTPAVRKMRID-SKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMG 338 + D + + + RFHDLRH+ + LI S VP+ V+ E Sbjct: 286 NLLFFNKKCEPIAEDVMSKKFKRFLEKNELPHIRFHDLRHSHVTLLINSKVPIKVISERV 345 Query: 339 GWESIEMVR-RYAHLAPNHLTEHARKIDDIF 368 G +I Y+H+ E + KI + Sbjct: 346 GHSNISTTLSVYSHVLKEMDKEASDKISESL 376 >UniRef50_Q0H247 DNA integration/recombination protein n=6 Tax=root RepID=Q0H247_9CAUD Length = 394 Score = 240 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 68/413 (16%), Positives = 136/413 (32%), Gaps = 70/413 (16%) Query: 5 RRNEIWYAS----YSLPGGKRIKESL-GTKDKRQAQELHDKRKAELWRVEKLGDLPDVTF 59 + E W GKR + G K K++AQ K E+ + D ++ F Sbjct: 10 KDGEKWMFKMDVGIDPATGKRKTTTRRGFKTKKEAQLAAAKLYDEINNGGYVKD-TNILF 68 Query: 60 EEACLRWL---EEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTK 116 ++ WL E A ++ + K + + +F ++LKD++ + + Sbjct: 69 KDFAQEWLAIYSETAKISTIRARKHELGHLMRYFGNLKLKDVTRKMYQDMLLDL------ 122 Query: 117 EIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IK 174 + K + T + I + A + + + P K Sbjct: 123 --------------------KKKGYADNTLDGIHTTGRMIFKKAM-ELELINSNPTEYAK 161 Query: 175 IPAVRN---------KRVRWLEKEEAKRLIDECPEP----LKSVVKFALATGLRKSNIIN 221 +P + K +++LEK E + E V TG+R ++ Sbjct: 162 VPKQKKTVEDIESGNKDMKFLEKHELALFLKTAQEHGLAMDYVVFSTLAYTGMRLGELLA 221 Query: 222 LEWQQIDMQRRVAWVNPEE--------------SKS-NRAIGVALNDTACKVLRDQIGKH 266 L+W+ I+ + + K+ + ++ +L+ + Sbjct: 222 LQWKDINFKEHTIAITKTLYSPRNNERYYQLLPPKTQGSIRTIKVDPNIISLLKKHKAEQ 281 Query: 267 HKWVFVHTKAAKRADGTSTPAVRKM--RIDSKTSWLSACRRAGI-EDFRFHDLRHTWASW 323 ++ + + R A I + H LRHT S Sbjct: 282 NEIKLRMGELYHDLGFVFARPSGFPEVPKKIEIRMKRLLRIANIHKHVTPHSLRHTHTSL 341 Query: 324 LIQSGVPLSVLQEMGGWESIEMVR-RYAHLAPNHLTEHARKIDDIFGDNVPNM 375 LI++GV + +Q+ G IE YAHL + ++K ++ + + N+ Sbjct: 342 LIEAGVGIKEIQQRLGHADIETTMNIYAHLTKDLEERASQKFSELMSNFIKNL 394 >UniRef50_A4J0G7 Phage integrase family protein n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J0G7_DESRM Length = 388 Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats. Identities = 80/400 (20%), Positives = 154/400 (38%), Gaps = 47/400 (11%) Query: 1 MSLFR---RNEIWYASYS---LPGGKRIKE-SLGTKDKRQAQELHDKRKAELWRVEKLGD 53 M+ + + + Y GKRI++ G K +R A+ + + + + Sbjct: 1 MATIKFNEKKGYYEVRYDAGFDGNGKRIQKYKGGFKKERDAKLFAAQLTVNISQGTHIEP 60 Query: 54 LPDVTFEEACLRWLEEKADKKSLDSDKSR----IEFWLEHFEGIRLKDISEAKIYSAVSR 109 F E WLEEK + S S + GI+L D+ A I S+ Sbjct: 61 NKMFLF-EYLNNWLEEKKETISPTSYCGYEVNIRCHINPYIGGIKLSDLRAAHIRGLYSK 119 Query: 110 MHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEK 169 + + +I +K KP+S + ++ L A R+ + + K Sbjct: 120 LQKAREIKIDGEK-------------RSFKPLSGTSIRYVHRVLSKALEDAYRE-ETIPK 165 Query: 170 APV--IKIPAVRNKRVRWLEKEEAKRLIDECPEP-LKSVVKFALATGLRKSNIINLEWQQ 226 P + P +L ++ + ++D+ E L V ++ G R+ ++ L+W Sbjct: 166 NPAKLVTPPTKNKFEAGFLSTKQIREMLDKLREDALYMPVYLSVVLGARRGEVLGLQWSD 225 Query: 227 IDMQRRVAWVN------------PEESKSNRA-IGVALNDTACKVLRDQIGK--HHKWVF 271 +DM+ ++ + E++K++ + + + D K L++ K + Sbjct: 226 VDMENKLIHIRHNLIMDNGNPVLREKTKTDSSNRVIVVTDRLIKALKEHKLKLKQKEMKL 285 Query: 272 VHTKAAKRADGTSTPAVRKM--RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGV 329 H + ++D T K S+ ++ G+ + RFHDLRH+ A+ +I V Sbjct: 286 QHGQLYHKSDFVCTWPDGKPFNPSHLSRSFSLRLQKYGLPNIRFHDLRHSNAALMIAQNV 345 Query: 330 PLSVLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIF 368 P+ + G +I++ Y H + E A KID Sbjct: 346 PMKGASDRLGHSTIQITNDLYGHTERSVQEEIAIKIDQAI 385 >UniRef50_C9RA80 Integrase family protein n=1 Tax=Ammonifex degensii KC4 RepID=C9RA80_AMMDK Length = 383 Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats. Identities = 81/400 (20%), Positives = 148/400 (37%), Gaps = 54/400 (13%) Query: 2 SLFRR---NEIWYASYSLPG-----GKRIKESL-GTKDKRQAQELHDKRKAELWRVEKLG 52 S+ +R ++Y G GKR ++ L G + K++A+ + AE+ R + Sbjct: 4 SIRKRVGKRGVYYDVVFDIGRDPVTGKRKQKWLRGFRTKKEAEAALAQAIAEVERGTYI- 62 Query: 53 DLPDVTFEEACLRWLEEKADK---KSLDSDKSRIEFWL-EHFEGIRLKDISEAKIYSAVS 108 D VT E W + K ++ + IE WL H GI L+ +S + +S Sbjct: 63 DPEKVTLAEYLKEWHAARKHKLSLRTWERYGQLIEHWLIPHLGGIPLRKLSPVHLEKFIS 122 Query: 109 RMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLE 168 M + +S T ++ LR A + + + Sbjct: 123 AMLE-------------------ADRLDGKGKISPTTVRHAALVLNKALRDAVKK-RLIP 162 Query: 169 KAPVIKIPAVRNKRVRW--LEKEEAKRLIDECPE-PLKSVVKFALATGLRKSNIINLEWQ 225 P+ + R R L++ E +RL+ L + + A+ TG R I+ L W+ Sbjct: 163 YNPMEAVDKPRKARKEPPALKEGELRRLMSAAEGTYLYAPITLAVYTGARLGEILGLRWR 222 Query: 226 QIDMQRRVAWV------------NPEESKS-NRAIGVALNDTACKVLRDQIGKHHKWVFV 272 +D + ++ +E K+ + + LR Q +W Sbjct: 223 DVDFEAGCIFILQALKRNLKGELYFDEPKTPRSRRRIEIGPACLAALRKQKKLQAEWKLK 282 Query: 273 HTKAAKRADGTSTPAVRKM--RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVP 330 A + T +++ + GI D FH LRHT A+ L+++GV Sbjct: 283 AGSAWQETGLVCTREDGSPIDPHAFSSAFRKLASKLGI-DANFHALRHTHATMLLKAGVH 341 Query: 331 LSVLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIFG 369 L ++ E G S+ + Y+H+ P A+ +++ Sbjct: 342 LKIVSERLGHASVAITGDLYSHVLPGMQGGAAQLVEEELN 381 >UniRef50_C0QHJ7 Phage integrase family protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QHJ7_DESAH Length = 360 Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats. Identities = 60/394 (15%), Positives = 134/394 (34%), Gaps = 64/394 (16%) Query: 1 MS-LFRRNEIWYASYSLPGGKRIKESL-GTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 M+ + +R + + + GKR ++ + A+E K + +L + T Sbjct: 1 MAKIAKRRDRYVLDFYDLEGKRKWITMPKGTTLKAAKEELRKVEDDLATGNYISPKKTPT 60 Query: 59 FEEACLRWLEEKA---DKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKT 115 F++ WL+ K + + + F+ +++ I+ ++ ++ Sbjct: 61 FDQVAQEWLDHKKMNIRASTWAVYEGHTKNHFPEFKNLKIHQITIQRVEKFITD------ 114 Query: 116 KEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--I 173 + ++ T K L ++ I A + + + P+ Sbjct: 115 --------------------RQAAGMNLSTLRKILVSLRQIFNLAVK-RGYCPRNPLDYA 153 Query: 174 KIPAVRNK------RVRWLEKEEAKRLIDEC-PEPLKSVVKFALATGLRKSNIINLEWQQ 226 +P + + +++ L ++ ++ + + A+ +G R+ ++ L+W Sbjct: 154 DMPKSQGEETDGADKIQILTHDQITAFLEVVTEQKYHVLFSLAIFSGARQGELLGLKWSD 213 Query: 227 IDMQRRVAWV-------NPEESKS-NRAIGVALNDTACKVLRDQI----GKHHKWVFVHT 274 I + ++K+ + + K L+ VF Sbjct: 214 ILWGDSQIHIQRSFNNQRFYDTKTKGSNRKIDIGPVMLKKLKKWRLACPPGGLDLVFPTA 273 Query: 275 KAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVL 334 K +L + A +E RFHD+RHT+AS LI G + + Sbjct: 274 KGNPMNHN----------NMVNRYFLPGLKAAKLERIRFHDMRHTYASLLIDQGENIKYI 323 Query: 335 QEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDI 367 Q G + + YAHL E A +++D Sbjct: 324 QAQLGHSNPTVTLNVYAHLMKGTNREAACRLEDA 357 >UniRef50_D2SBK5 Integrase family protein n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2SBK5_9ACTO Length = 365 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 84/386 (21%), Positives = 149/386 (38%), Gaps = 56/386 (14%) Query: 7 NEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLG-DLPDVTFEEACLR 65 ++ + + Y GG++ ++ + + AQ D++ + + + VT E + Sbjct: 14 SKRYRSRYRDAGGRQHEKR--FQRRVDAQRWLDEQTSAIVTQTWTAPERGRVTVEAWAEQ 71 Query: 66 WL--EEKADKKSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQK 122 WL + +L +S + L + RL DI+ A + + V+++ Sbjct: 72 WLAAQTGLKPSTLYRYRSLLRAQILPRWGRHRLADITHADVAAWVAQL------------ 119 Query: 123 VQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKR 182 ++ T + ++ IL A RD + + + P +P R +R Sbjct: 120 --------------VAGGLAPPTVRQAHRVLALILTLAVRDGR-IPRNPAAGVPLPRTRR 164 Query: 183 --VRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWV---- 236 R+L +EE +RL D E VV+ TGLR + L +++D RR V Sbjct: 165 ADPRFLTREEVERLADAAGE-YGDVVRLLAYTGLRFGEMAALRVRRVDFLRRRLTVAESA 223 Query: 237 -------NPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVR 289 K+++ V + + L + G + V T AV Sbjct: 224 TEVGGTVEYGTPKTHQQRTVPIPAVLVEPLSRRCGGKGRDDLVLTSPG--------GAVL 275 Query: 290 KMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMV-RR 348 + + + A + AG+ED HDLRHT AS L+ SG + +Q M G S M Sbjct: 276 RSGNFRRRFFDPAAKAAGLEDLSPHDLRHTAASLLVASGANVKAVQRMLGHASAAMTLDV 335 Query: 349 YAHLAPNHLTEHARKIDDIFGDNVPN 374 Y+ L + L A ++D +V Sbjct: 336 YSGLFDDDLGALADRMDAAHEASVTR 361 >UniRef50_A0LQG0 Phage integrase family protein n=2 Tax=Deltaproteobacteria RepID=A0LQG0_SYNFM Length = 415 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 78/383 (20%), Positives = 137/383 (35%), Gaps = 37/383 (9%) Query: 12 ASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRWLEEKA 71 GKR K++R+AQE K +AE R T + Sbjct: 59 IRAERIEGKRPSRK-EIKEEREAQEHAVK-EAEANR---------WTITRLWEEYKRGTP 107 Query: 72 DKKSLDSDKSRI-EFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKG 130 K + +D++R + F + ++ + + + + Sbjct: 108 GLKGIVTDENRFEKHIKPIFGDKQPHELGALDVDRLRIGLLKK---ARKPAVQKTPGDSK 164 Query: 131 KELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKRVRWLEKEE 190 P+ T L +++ I+ + I++P V N R L +E Sbjct: 165 PGTVKKSVDPLKPGTVKNVLELLRRIINFGVKKNLCTGAGFAIELPKVNNLRTEDLTPDE 224 Query: 191 AKRLIDECPEP----LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRA 246 +L+D + +++K AL TG+R+ + L+W +D +R + K Sbjct: 225 LAKLMDAIEKDENLIAANLMKMALFTGMRRGELFRLKWSDLDFERGFIHIRGP--KGGVD 282 Query: 247 IGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRA 306 + +N+ A K+L+ + +VF +R D S A Sbjct: 283 QTIPVNEEARKILQSHRRTNSGFVFPGRGGHQRID-------------IHKSVNKIKEAA 329 Query: 307 GIE-DFR-FHDLRHTWASWLIQSG-VPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARK 363 G+ FR H LRH +AS L SG V L LQ + +S M +RYAHL + L + Sbjct: 330 GLPKGFRALHGLRHAYASMLASSGKVDLYTLQRLLTHKSPTMTQRYAHLRDSALRNASDL 389 Query: 364 IDDIFGDNVPNMSHSEIMEDIKK 386 +I + + + DI + Sbjct: 390 AGEIITGIMDAKQDEKSILDIIR 412 >UniRef50_B1JDB3 Integrase family protein n=3 Tax=root RepID=B1JDB3_PSEPW Length = 340 Score = 238 bits (609), Expect = 2e-61, Method: Composition-based stats. Identities = 78/369 (21%), Positives = 140/369 (37%), Gaps = 57/369 (15%) Query: 1 MSLF-RRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLG--DLPDV 57 M+ + +R + W A G + S K +AQ + + ++ R + + Sbjct: 16 MAYYEKRGDAWRAQIRRKGYPTL--SATFDTKAEAQRWAAEIEGDMSRARFVDMREAEST 73 Query: 58 TFEEACLRWLEEK-ADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTK 116 T +EA R+L E + KK ++ RI+ W EH ++ ++ Sbjct: 74 TLDEALDRYLSEVTSTKKGAKQEQVRIKKWKEH-------------------KLASKGLA 114 Query: 117 EIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLE-KAPV--I 173 I + A + ST T +LA+I + A ++W P I Sbjct: 115 AIRSSDMAAYRDAELKE------GKSTATVRLNLAVISHLFTVATKEWGIEGLTNPCRAI 168 Query: 174 KIPAVRNKRVRWLEKEEAKRLIDEC---PEPLKSVVKFALATGLRKSNIINLEWQQIDMQ 230 ++P +R R E L L ++ A+ T +R+S ++ L + + Sbjct: 169 RMPKGSKERDRRPTPAELTALYKAAGQMNAQLPVFIELAVETAMRRSELLMLRRDHV--R 226 Query: 231 RRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRK 290 +VA++ E++K+ V L+ A +L R + Sbjct: 227 GKVAYL--EDTKNGERRAVPLSSRAIALLEG---------LPTPIGGGRYFNLAL----- 270 Query: 291 MRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYA 350 + AC AGIE R HDLRH S + G + + + G +++ M++RY Sbjct: 271 --NTISNYFPRACAAAGIEGLRLHDLRHEATSRFFERGFTMMEVASITGHKTLAMLKRYT 328 Query: 351 HLAPNHLTE 359 HL+P+ L E Sbjct: 329 HLSPHDLAE 337 >UniRef50_UPI0001C37C27 integrase family protein n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37C27 Length = 391 Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats. Identities = 63/403 (15%), Positives = 146/403 (36%), Gaps = 57/403 (14%) Query: 2 SLFR-RNEIWYASYSLP--GGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 S+++ + W A S+P G + + + ++ + ++ + + VT Sbjct: 10 SIYKDKQGRWRAVISIPSVDGPPKRRYIYGQTRKAVADKMHIILNQIHTNTYI-EPCKVT 68 Query: 59 FEEACLRWLEEK----ADKKSLDSDKSRI-EFWLEHFEGIRLKDISEAKIYSAVSRMHNR 113 E WL++ + + + + G +L D++ + + S + Sbjct: 69 LYEWLCTWLDQYCKIEVKLTTYVNYDTYVHRHIKNTIGGYKLCDLNTSIMQSFFNE---- 124 Query: 114 KTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV- 172 K + ++ +S +T M+ L A + K P Sbjct: 125 ---------------KAENGKLHSSGGLSPKTIKNMHDMMHRALDKAV-HLDMIIKNPTD 168 Query: 173 -IKIPAVRNKRVRWLEKEEAKRLIDECP-EPLKSVVKFALATGLRKSNIINLEWQQIDMQ 230 + +P R +R+L +E K+L + + L+ V AL TG+R+ I L+W+ + ++ Sbjct: 169 FVTLPKRRKSEMRFLTIDEQKKLQEALKGDRLEMPVLLALYTGMRQGEIFGLKWKYVHIE 228 Query: 231 -----------------------RRVAWVNPEESKS-NRAIGVALNDTACKVLRDQIGKH 266 +R +++ E K+ + + L + L + + Sbjct: 229 STDRAWLRVVQAVNRFSNRTDDGKRKTFLSLSEPKTPHSIRTIPLMPYIAERLTEYKCEQ 288 Query: 267 HKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQ 326 + + T+ + + + +R G+ + H LRHT+A+ ++ Sbjct: 289 EQHFKDNGLPMSEMVFTTKNGNLVDPRNFQRDFKLLLKRNGLHEINVHGLRHTFATRALE 348 Query: 327 SGVPLSVLQEMGGWESIE-MVRRYAHLAPNHLTEHARKIDDIF 368 SG+ + L ++ G S+ + YAH+ + E ++ Sbjct: 349 SGMNVKTLSKILGHSSVAFTLDTYAHVTEDLKFEEMSALNSFL 391 >UniRef50_Q831G3 Site-specific recombinase, phage integrase family n=1 Tax=Enterococcus faecalis RepID=Q831G3_ENTFA Length = 379 Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats. Identities = 71/394 (18%), Positives = 139/394 (35%), Gaps = 52/394 (13%) Query: 3 LFRRNEIWYAS----YSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 + ++ ++ GK+ ++ L K++AQ++ K L+ KL D+T Sbjct: 2 ITKKENGYFVDVSLGIDPISGKQRRKRLTVSTKKEAQQIESKYLR-LYHENKLTTNSDLT 60 Query: 59 FEEACLRWLEEKAD--KKSLDSDKSRI--EFWLEHFEGIRLKDISEAKIYSAVSRMHNRK 114 ++ + E+ K S + RI + +F+ ++K I + +IY + K Sbjct: 61 LKDIYEVYEEKYTQNLKPSYKQTQERIFKNYIEPYFKNTQIKLIKKQQIYDFQQFLLTSK 120 Query: 115 TKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV-- 172 + +S +T + ++ + A ++ + P Sbjct: 121 --------------------PKRKETLSNKTINMIIIHLQKLFNVAMKE-GLSYENPCNQ 159 Query: 173 IKIPAVRNKRVRWLEKEEAKRLIDECPEP---LKSVVKFALATGLRKSNIINLEWQQIDM 229 I V+ K + + +E I + LK +FA TG+R +I L W ID Sbjct: 160 IDKLKVQKKEIDFWTLDEFTTFISHIDKNKPFLKVFYQFAFFTGMRAGEMIALTWSDIDF 219 Query: 230 QRRVAWVNP-----------EESKS-NRAIGVALNDTACKVLRDQIGKHHKWV---FVHT 274 + +N K+ + + +N +L+ K + F + Sbjct: 220 YNQTVRINKSAKLINGNYVTTTPKTESSNRYITINSKITAMLKKWQEIQPKLLIDNFQNI 279 Query: 275 KAAKRADGTSTPAVRKMRIDSKTSWLSACRRA-GIEDFRFHDLRHTWASWLIQSGVPLSV 333 + K + SK + ++ R HD RH+ + LI + + Sbjct: 280 DSDKLLVFQYSEKHPSSDYYSKQIKKIIVKNNLNLKPIRLHDFRHSHVALLIHNNEKNTT 339 Query: 334 LQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDD 366 ++E G SI Y HL PN + K D+ Sbjct: 340 IKERLGHSSITTTIDTYGHLYPNSQKSMSDKFDN 373 >UniRef50_B0UQB2 Integrase family protein n=5 Tax=Rhizobiales RepID=B0UQB2_METS4 Length = 338 Score = 238 bits (607), Expect = 3e-61, Method: Composition-based stats. Identities = 79/378 (20%), Positives = 144/378 (38%), Gaps = 61/378 (16%) Query: 2 SLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRV---EKLGDLPDVT 58 ++ +R W A G + S + K +A R+ E+ + +T Sbjct: 3 TIRKRGTSWQAQVRRDGFPPLSRS--FRTKAEAVAWGRDREREIEGGSLSVATREPKGLT 60 Query: 59 FEEACLRWLEEKA-DKKSLDSDKSRIEFWLEH-FEGIRLKDISEAKIYSAVSRMHNRKTK 116 E R+ + K+ S++SRI H +++ +S + + Sbjct: 61 VAEILRRYQAAVSCKKRGARSERSRIGTLQAHPIGQAQVRRLSASMVARYRDDRLEI--- 117 Query: 117 EIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKW-LEKAPV--I 173 V+ + + L +++ L A R+W L PV I Sbjct: 118 ------------------------VAGDSVRRELTILRHCLEVARREWGIPLPSNPVGQI 153 Query: 174 KIPAVRNKRVRWLEKEEAKRLIDECPE----PLKSVVKFALATGLRKSNIINLEWQQIDM 229 K+P R + LE E+A+ LI L+ +V A+ TG+R+ ++ L W +D+ Sbjct: 154 KLPEPSKGRQQRLEAEQAQALILALKRSRVWYLRPLVNLAIETGMRRGELLTLRWANVDL 213 Query: 230 QRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVR 289 R+A++ E +K+ + + L+ A VL+ + VF T Sbjct: 214 SSRIAYL--ETTKNGHSRTIPLSPGALSVLKGL-PRTDARVFPLTG-------------- 256 Query: 290 KMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRY 349 + +W RAG+ + RFHDLRH S + G+ + + + G + RY Sbjct: 257 ---NAVRLAWERLRNRAGLPELRFHDLRHEAISRFFEIGLSIPEVALISGHRDTRTLMRY 313 Query: 350 AHLAPNHLTEHARKIDDI 367 HL P L + ++ D+ Sbjct: 314 THLRPEVLAKKLQQARDV 331 >UniRef50_B4V6V4 Phage integrase n=6 Tax=Streptomyces RepID=B4V6V4_9ACTO Length = 426 Score = 237 bits (606), Expect = 4e-61, Method: Composition-based stats. Identities = 69/397 (17%), Positives = 142/397 (35%), Gaps = 31/397 (7%) Query: 2 SLFRRNEIWY---ASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 ++++R + + PG R + + ++ A ++ A R + D T Sbjct: 21 TVYQRKDGRWEAAGYVLAPGNTRKRIRVYGTTRKDAMTKLTEKIAASNRGLPVA-AADST 79 Query: 59 FEEACLRWLE----EKADKKSLDSDKSRIEFWLEH-FEGIRLKDISEAKIYSAVSRMHNR 113 WL+ + + + I L +L ++ + + + + R Sbjct: 80 VSAYLAYWLDGVAVHHLRENTHTRYAASIRLHLNPGLGVKKLARLTTRDVRTFLDGL--R 137 Query: 114 KTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVI 173 T + Q + R + K +S T A++K+ L A R+ + + Sbjct: 138 TTCQCCAQNRDSVRRSCCAIGQCCGKRLSPLTVTYVHAVLKSALEHAVREDEL-PRNVAR 196 Query: 174 KIPA--VRNKRVRWLEKEEAKRLIDECP-EPLKSVVKFALATGLRKSNIINLEWQQIDMQ 230 + R +R + L EA++L+ + L ++ + AL TGLRK ++ L W+ +D+ Sbjct: 197 NVKTTTPRPRRFQPLTAAEARQLLHAANGDRLNALYELALRTGLRKGELLGLHWEDLDLD 256 Query: 231 RRVAWVNPEESKSNR-------------AIGVALNDTACKVLRDQIGKHHKWVFVHTKAA 277 A ++ ++ +AL L+ + + + Sbjct: 257 GGTATIHRSLQRTRSQGLTVLNTKTLASDRRIALPTECLNSLKTHQERQQEERQTAGTSW 316 Query: 278 KRADGTSTPAVRKM--RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQ 335 T + + + A + RFHDLRH+ A+ L++ GV L V++ Sbjct: 317 TDNGLVFTTPNGQPLDPTNLTRRFRRLLHGAELRTIRFHDLRHSTATLLLEQGVDLVVIK 376 Query: 336 EMGGWESIEMVR-RYAHLAPNHLTEHARKIDDIFGDN 371 E+ G I + YAH+ + + I Sbjct: 377 ELLGHAHIGVTAGVYAHVRLRLQHQAIDTLGSILSPT 413 >UniRef50_A4XLL4 Phage integrase family protein n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XLL4_CALS8 Length = 360 Score = 237 bits (606), Expect = 5e-61, Method: Composition-based stats. Identities = 63/391 (16%), Positives = 140/391 (35%), Gaps = 61/391 (15%) Query: 3 LFRRNEIWYASYSLP---GGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTF 59 + ++ + GKRI++ + +A++ + A + + Sbjct: 7 IEKKKGKFQVVLEYGIDGNGKRIRKYKTFDKESEAKKYLIQMLA--------NEGKFIPL 58 Query: 60 EEACLRWLEEKAD----KKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKT 115 E RWLEE A K+ K ++ + F L+ ++ ++ +++ Sbjct: 59 NEFLDRWLEEYAKNYVAPKTYIKYKDSLKHVRKAFPSHTLQQLNTFELQKFFNQLSQ--- 115 Query: 116 KEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAP--VI 173 +S + K +++ L+ A + W L++ P + Sbjct: 116 ------------------------TLSQASVRKIYSVLNNALKTAIK-WNMLKENPLEFV 150 Query: 174 KIP-AVRNKRVRWLEKEEAKRLIDECPEP-LKSVVKFALATGLRKSNIINLEWQQIDMQR 231 K+P K+++ + E K+ +++ + + + V AL GLR I L W +D ++ Sbjct: 151 KLPQKYEEKKIKVWDIETVKKFLEDIKDEKIHTAVTLALHAGLRAGEICGLTWDNVDFEK 210 Query: 232 RVAWVNPEESKSNRA------------IGVALNDTACKVLRDQIGKHHKWVFVHTKAAKR 279 + + K + + + + L ++ + + K Sbjct: 211 KCIHIKQALQKIGKEIIIKPPKSKTSIRTIYMTSYLYETLLEEYKRQEPLREAYKKLGNF 270 Query: 280 ADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGG 339 ++ G + RFHDLRHT+A+ L+Q+ + E+ G Sbjct: 271 VC-IHETGNPFCPDYFTHTFKKLVSCLGYPEIRFHDLRHTFATILLQAQTNPKIAAEILG 329 Query: 340 WESIEM-VRRYAHLAPNHLTEHARKIDDIFG 369 + ++ + YAH+ + KI++I G Sbjct: 330 HSNTKLFLNLYAHVLDEQKIKATHKIEEILG 360 >UniRef50_C0XLK8 Phage integrase family site specific recombinase n=6 Tax=Lactobacillales RepID=C0XLK8_LACHI Length = 401 Score = 237 bits (606), Expect = 5e-61, Method: Composition-based stats. Identities = 59/404 (14%), Positives = 141/404 (34%), Gaps = 61/404 (15%) Query: 2 SLFRRNEIWYASYSLP--GGKRIK-ESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 ++ ++ WY ++ GKR + E G K K+QA+ + + + L ++ Sbjct: 21 TVRKKGNNWYYAFDTGTLNGKRSRIERSGGKKKKQAEAPLRQALQKYENDGSVAKLTNMN 80 Query: 59 FEEACLRWLEEKADKKSLDSDKSRI-----EFWLEHFEGIRLKDISEAKIYSAVSRMHNR 113 ++ + W E ++ + + ++ + R++ I A + + V+ + Sbjct: 81 VQQYFMYWYENYVQRELKPNTQINYLNIINKYIIPKIGNFRIRSIGPAALQNLVNDLGET 140 Query: 114 KTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV- 172 K + T + +IK + A ++ +++ P Sbjct: 141 KLAKH--------------------------TVQIIVMVIKEGFKKAVYPYQLIKEDPAR 174 Query: 173 -IKIPA------VRNKRVRWLEKEEAKRLIDECPE--PLKSVVKFALATGLRKSNIINLE 223 I +P + K+++ + + ++++ P P ++ A TG+R+ + L Sbjct: 175 YIIMPKYHDDERITRKKLKIITMNQYEQILSITPPSNPFYIPLQIAFGTGMRRGEVCGLT 234 Query: 224 WQQIDMQRRVAWVNPE------------ESKS-NRAIGVALNDTACKVLRDQIGKHHKWV 270 W +D+ V K+ + +++ ++ +LR + Sbjct: 235 WTNVDLNGHTIEVKQAMMQESKGKFSIVTPKTTSSYRTISIGESLVDLLRQHKKHQMEER 294 Query: 271 FVHTKAAKRADGTSTPAVRKM--RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSG 328 + + ++ T K + G F FH LRHT A+ L++ G Sbjct: 295 LRYGQYYHESNFVCTKENGIPVTPNTIKYQCDRIQKELGFP-FNFHSLRHTHATMLLEHG 353 Query: 329 VPLSVLQEMGGWESIEMVR-RYAHLAPNHLTEHARKIDDIFGDN 371 + +Q G I Y+H+ + + I ++ Sbjct: 354 ANIKDIQARLGHSRIATTMDTYSHVTHKMQRQTVNIFERIMKES 397 >UniRef50_A1SRZ5 Phage integrase family protein n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SRZ5_PSYIN Length = 337 Score = 236 bits (604), Expect = 7e-61, Method: Composition-based stats. Identities = 81/368 (22%), Positives = 145/368 (39%), Gaps = 55/368 (14%) Query: 5 RRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRK--AELWRVEKLGDLPDVTFEEA 62 +++ + + + GKRI +S K K++AQ +L L + F +A Sbjct: 10 KKSITYRVEF-MRDGKRISKS--FKLKKEAQTFMALLLVDNDLANSLTNHILTTLNFSDA 66 Query: 63 CLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQK 122 + L+ D S R+ +W+ F +++ ++ ++ + + R+ N K Sbjct: 67 VKKLLD--QDNGRDPSKHQRLRYWVSVFGSLKVGKVTRQQVKAELKRLSNDK-------- 116 Query: 123 VQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPA--VRN 180 + T ++ A + ++ R ++ ++ PV I + Sbjct: 117 -------------------APATLNRYKAALGSLYRYLSDEFD-IDYNPVKGIRQYTEND 156 Query: 181 KRVRWLEKEEAKRLIDECP----EPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWV 236 R R+L EE L + L +V A+ TG R+S ++ LEW I+ + + A + Sbjct: 157 ARTRFLSDEELSILFAMVKQSKWDQLFLLVLMAITTGARRSEMLTLEWDDINFKTKTAHL 216 Query: 237 NPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSK 296 +K+ + L L +VF H + Sbjct: 217 --PNTKNGEQRILTLTGDVITELMKYRCI-GGYVFPHPDDPTIYF-----------RNFD 262 Query: 297 TSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNH 356 W SA R I DFRFHDLRHT AS L +G L + ++ G +SI M +RY+HL H Sbjct: 263 IHWQSALREGEITDFRFHDLRHTCASLLAMNGASLLEIAQVLGHKSITMTQRYSHLCIEH 322 Query: 357 LTEHARKI 364 + ++ Sbjct: 323 KAKLTDRV 330 >UniRef50_A3T0W5 Site-specific integrase/recombinase-like n=3 Tax=Rhodobacteraceae RepID=A3T0W5_9RHOB Length = 353 Score = 236 bits (603), Expect = 9e-61, Method: Composition-based stats. Identities = 89/391 (22%), Positives = 151/391 (38%), Gaps = 51/391 (13%) Query: 1 MSLF-RRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTF 59 M ++ ++ + GG R + S GT+D A+ + +A R G D T Sbjct: 1 MPFRTKKTRVYQYDI-VVGGHRFRGSCGTEDFEAAKAVEADIRANAKRNAARG--SDYTL 57 Query: 60 EEACLRWLEEK-ADKKSLDSDKSRIEFWLEHF-EGIRLKDISEAKIYSAVSRMHNRKTKE 117 EA ++ +K A + S + KS+ L + R+ +++A I ++ Sbjct: 58 SEALGTYINDKIAGRPSEGTTKSQARVILSYMDGKKRISKLTDADITQYAAK-------- 109 Query: 118 IWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIP- 176 + T +HL M+ LR + +K + P I + Sbjct: 110 -------------------HRATCANSTVNRHLQMLGRALRHMGKIYK--TEIPDIDLKA 148 Query: 177 ---AVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRV 233 +RVR L +E RL P+ +V FAL TG R S I L W+ +DM R Sbjct: 149 AETKEPRERVRELTTDEQTRLFAALPQEFHPIVAFALMTGARISTITGLLWRDVDMPNRE 208 Query: 234 AWVNPEESKSNRAIGVALNDTACKVLRDQIGKH----HKWVFVHTKAAKRADGTSTPAVR 289 K + + +N +L + ++VF + Sbjct: 209 ISFRL---KGDELMIFPINGELAALLSALPKSNVMESRRYVFTRVDGHSAERIQIVASGG 265 Query: 290 KMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRY 349 T W A AG+E+FRFHDLRHT+A+ +++ +S++ ++ G +IE RY Sbjct: 266 V----FGTVWRKALLDAGVENFRFHDLRHTFATRMLRKTQNISLVSKLLGHTNIETTSRY 321 Query: 350 AHLAPNHLTEHARKIDDIFGDNVPNMSHSEI 380 AH+ + L + I G + + I Sbjct: 322 AHVLTSDLRNALDRFS-ITGSGPSTLQPNNI 351 >UniRef50_A4TWM2 Phage integrase n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TWM2_9PROT Length = 387 Score = 236 bits (603), Expect = 9e-61, Method: Composition-based stats. Identities = 80/380 (21%), Positives = 142/380 (37%), Gaps = 57/380 (15%) Query: 1 MSLFRRNE-IWYASYSLPGGKRIKESLGTK---DKRQAQELHDKRKAELW-----RVEKL 51 M ++ ++ Y+ P G+ + +G QA+ + +A++ +K Sbjct: 35 MEVWPTGGITFWCKYTDPAGRSREVKIGKAADISVEQARRKAKELRAQVALSGDPAGDKD 94 Query: 52 GDLPDVTFEEAC-LRWLEEKADK-KSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVS 108 TF+ ++L D+ +S +S + + RL +I I Sbjct: 95 KHRAVPTFKAFVTEQYLPFAKDRLRSYSDQESMCRLRLIPTWGAKRLDEIRTTDIVELQR 154 Query: 109 RMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLE 168 R+ + +S T +H+A+ K + A R + Sbjct: 155 RLRDE--------------------------NLSPSTVNRHVALAKRVFNLALRWQAYEG 188 Query: 169 KAPVIKIPAVRN-KRVRWLEKEEAKRLIDECPEP----LKSVVKFALATGLRKSNIINLE 223 + P + R +R R+L +E +RL + + + TG RKS +N Sbjct: 189 RNPCQHVEFAREHQRERFLTPDEMRRLFQALDDEPSRSAANCIALLALTGARKSEALNAR 248 Query: 224 WQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHH-KWVFVHTKAAKRADG 282 + ID+ RV V SKS + + L++ A K+L + W+F + Sbjct: 249 FDDIDLPNRVWTVPASRSKSGKVRRIPLSEAAVKLLVGLPPEPDCPWLFPNA-------- 300 Query: 283 TSTPAVRKMRIDSKTSWLSACRRAGIE-DFRFHDLRHTWASWLIQSGVPLSVLQEMGGWE 341 A + + W A + D R HDLRH++AS L+ SG L +Q + G Sbjct: 301 ----ASDGPIENIRRCWNRLKAAATLPSDTRPHDLRHSFASLLVGSGQSLYSVQTILGHA 356 Query: 342 SIEMVRRYAHLAPNHLTEHA 361 S M RY+HL+ L + Sbjct: 357 SPNMTARYSHLSNTSLVDRV 376 >UniRef50_Q1D2W1 Site-specific recombinase, phage integrase family n=7 Tax=Myxococcales RepID=Q1D2W1_MYXXD Length = 334 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 79/313 (25%), Positives = 131/313 (41%), Gaps = 26/313 (8%) Query: 70 KADKKSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIR 128 S+DS + + L F + L +I A+I + M +K+ ++ A+ R Sbjct: 18 HNKHSSVDSKRQILRDHILPFFGKVALANIGLAEIEDFKAHMRKKKSAAHKRKD-SASKR 76 Query: 129 KGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIP-AVRNKRVRWLE 187 ++ EPKP+S +T L ++ +L A + + +AP +K + +L Sbjct: 77 AIRKRQRSEPKPLSLKTINNVLTVLHKLLTLA-EEHGVIRQAPRVKPFGKLPKPPFDFLS 135 Query: 188 KEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPE-------E 240 EEA +L+ +++++ A+ TGLR+ +I L W + + R + V Sbjct: 136 FEEADQLLAVAEPEWRTLLRVAIKTGLRQGELIGLRWHDLTLTRGLLHVRRTIWRGIEGL 195 Query: 241 SKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWL 300 K R V L + L + ++VF G + Sbjct: 196 PKGGRERTVDLPASVVDALNAHRHRRGRFVFCQEDGQPLTKGKMAAPLG----------- 244 Query: 301 SACRRAGIED----FRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNH 356 A R AGI +HDLRHT+ S L G+PL V+QE+ G +IEM RYAHL+P+ Sbjct: 245 RALRAAGITREVGQIGWHDLRHTYGSHLAMRGIPLKVIQELIGHATIEMTNRYAHLSPDT 304 Query: 357 LTEHARKIDDIFG 369 E +D Sbjct: 305 RREAVAVLDRPLA 317 >UniRef50_A5N1F6 Integrase-related protein n=3 Tax=Clostridia RepID=A5N1F6_CLOK5 Length = 416 Score = 236 bits (602), Expect = 1e-60, Method: Composition-based stats. Identities = 73/393 (18%), Positives = 139/393 (35%), Gaps = 62/393 (15%) Query: 29 KDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRWLEEKAD----KKSLDSDKSR-I 83 K +A + K E+ + L D +TFEE +WL++ A+ K+L K Sbjct: 42 KQLEEANKQWVLFKDEIEKGIYL-DSGKITFEEFIKKWLKDYAEAELAPKTLYRYKELLY 100 Query: 84 EFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVST 143 + I+L + I S + + +P +S Sbjct: 101 TRIIPALGHIKLNKLQPTHITEFYSNLREDGIRN-----------------DGKPGGLSE 143 Query: 144 QTKAKHLAMIKAILRAAERDWKWLEKAPVIKI--PAVRNKRVRWLEKEE---AKRLIDEC 198 +T H +I +IL A + W ++ P +++ P V K R EE +LI+ Sbjct: 144 RTILHHHRLISSILATAIQ-WGFILNNPALRLKAPKVEKKEARHFNIEETAYVLQLIENE 202 Query: 199 PEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNP------------EESKSNRA 246 P K+++ A+ G+R+ + L W I+ +N + +K+ Sbjct: 203 PIKYKTMITLAIYGGMREGELTALTWSDINFDDCTIKINKSLQHLPGRDTFIKSTKTETT 262 Query: 247 IGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRK--MRIDSKTSWLSACR 304 +++ + +L++ + +D T K +L R Sbjct: 263 RLISIPISVMTLLKEYKRWQNTEKLKLGNLWHDSDALFTATDGKSIFPSTISKWFLKFIR 322 Query: 305 RAG------------------IEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWE-SIEM 345 + +++ FH LRHT A+ LI GV ++ + + G + Sbjct: 323 KHNESIINDDKIPPKDKSKYLLKEVNFHGLRHTSATLLINQGVDITTVSKRLGHARTSTT 382 Query: 346 VRRYAHLAPNHLTEHARKIDDIFGDNVPNMSHS 378 Y+H E A K++++F + V Sbjct: 383 TDIYSHSLQKADVEAADKLENLFNNEVNKAKKQ 415 >UniRef50_A6VKB4 Phage integrase family protein n=9 Tax=Pasteurellaceae RepID=A6VKB4_ACTSZ Length = 448 Score = 236 bits (602), Expect = 1e-60, Method: Composition-based stats. Identities = 110/341 (32%), Positives = 176/341 (51%), Gaps = 38/341 (11%) Query: 26 LGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRWLEEKADKKSLDSDKSRIEF 85 T+ +++AQELHDK KAELW + KL P FEEA L ++E+ +KK D+ + + Sbjct: 123 TKTEVRKKAQELHDKIKAELWDLAKLNKTPPRMFEEALLLYVEDAKNKKDFDTSRRHAIY 182 Query: 86 WLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQT 145 W F G LK+IS I + + K +S T Sbjct: 183 WRAVFSGWELKNISGEDINANLP-----------------------THSTTHKKALSPST 219 Query: 146 KAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKRVRWLEKEEAKRLIDECP-EPLKS 204 K ++ I ++ A ++ W+++ P + RVRW+ K +A LI +K+ Sbjct: 220 KNRYRTSILRVMSLAYKN-GWVDRVPYVPKYVEPKVRVRWITKAQAAALIANLNLAWMKN 278 Query: 205 VVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIG 264 V FAL TG R + I++L W ++D R +A V+ + +KS +A + LN A +L++ Sbjct: 279 VCSFALLTGARMTEILSLTWDKVDFDRSIAIVSNDVAKSGKARALPLNKIALDLLKNLKQ 338 Query: 265 -KHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASW 323 + +++VF +++ + A ++GI++FRFHDLRHTWASW Sbjct: 339 NRRNEYVF------------HRDTDKRIGRIDWHDFHQALNKSGIDNFRFHDLRHTWASW 386 Query: 324 LIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKI 364 +Q+G PL L+EMGGWE++EMV++YAHL H+ E+A + Sbjct: 387 HVQAGTPLYTLKEMGGWETLEMVKKYAHLNATHMLEYAENV 427 >UniRef50_D0L542 Integrase family protein n=3 Tax=Bacteria RepID=D0L542_GORB4 Length = 463 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 74/396 (18%), Positives = 143/396 (36%), Gaps = 51/396 (12%) Query: 2 SLFRRNEIWYASYSL-----PGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPD 56 S+ + WY L +R + G + KR+A + D+R +E+ + Sbjct: 4 SVKKDAGSWYYVVDLGRDPATNKRRQERKRGFRTKREAVDALDERLSEVRTGI-VAVDQR 62 Query: 57 VTFEEACLRWLEEK----ADKKSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMH 111 +T + WL K +L S + ++ + + +RL+D+ + +S + Sbjct: 63 LTLAQYLASWLTAKEQAGIRATTLRSYRQHVDSYIVPTIGNVRLRDLRATHVEHMLSEIA 122 Query: 112 NRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAP 171 K + R+ PK +S T+ + A +++ L +A+R + Sbjct: 123 KPPKKPAKGVAIGKGKRRN-------PKALSPATQRRVHATLRSALTSAKRK-HLVSFNA 174 Query: 172 VI--KIPAVRNKRVRWLEKEEAKRLIDEC-PEPLKSVVKFALATGLRKSNIINLEWQQID 228 ++P +V+ E + +D + L + + TGLR+ + + W +D Sbjct: 175 AADMELPRASRPKVKPWEASDLGAFLDHATKDRLGAFFETIAMTGLRRGEALGIRWPDVD 234 Query: 229 MQRRVAWVNPE--------------------------ESKSNRAIGVALNDTACKVLRDQ 262 ++ VN + ++ S A V L+ VL Q Sbjct: 235 FEKARVTVNQQLVEVDGTGIDCPFCGGEHKQFRFGPCKTASGEARIVDLDSGTLGVLMAQ 294 Query: 263 IGKHHKWVFVHTKAAKRADGTSTPAVRKM--RIDSKTSWLSACRRAGIEDFRFHDLRHTW 320 + + A D + + AG+ R HDLRH Sbjct: 295 RLRQEQEREQWGDAYNDHQLVFAREDGSPIPPADVTAKFHALTDEAGLRRIRLHDLRHGQ 354 Query: 321 ASWLIQSGVPLSVLQEMGGWESIEMV-RRYAHLAPN 355 AS ++ +GVP++V+ + G SI + Y+HL Sbjct: 355 ASLMLAAGVPIAVVSKRLGHSSISITSDTYSHLLDG 390 >UniRef50_B2TMD1 Prophage LambdaBa04, site-specific recombinase, phage integrase family n=3 Tax=Clostridium RepID=B2TMD1_CLOBB Length = 386 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 68/408 (16%), Positives = 141/408 (34%), Gaps = 70/408 (17%) Query: 2 SLFRRNEIWYASYS--LPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTF 59 S+ ++ +WY Y + G K+ E G K++A + ++ L ++ Sbjct: 4 SVRKKGNVWYYRYYEYVNGVKKQIERKGGITKKEALQKLNEEIYRQNNG--LLKPKEILL 61 Query: 60 EEACLRWLEEKADKKSLDSDKSRIE-----FWLEHFEGIRLKDISEAKIYSAVSRMHNRK 114 ++ WLE+ + ++ + + + I+L D+ I +S++ Sbjct: 62 KDYLKIWLEDYVKPNNSENTYIKYKGTVNKYINPQLGLIKLCDLKVINIEQFLSKL---- 117 Query: 115 TKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV-- 172 + +S T KH ++ L A + + L P Sbjct: 118 ----------------------KKTKLSLTTIQKHYLVLNGALNKAIK-LQMLNDNPCKY 154 Query: 173 IKIPAVRNKRVRWLEKEEAKRLIDECPEPLK--SVVKFA----LATGLRKSNIINLEWQQ 226 + P + L EE + + ++K + TGLR+ + L+W Sbjct: 155 VDTPKRSKYKASILTFEELHSIYTNLNTKIYEDYIMKLGMDLTIETGLRRGEMCGLQWSD 214 Query: 227 IDMQRRVAWVNPEES-----------KSNRA-IGVALNDTACKVLRDQIGKHH------- 267 ID ++ VN K++ + + L++ K+L+ K + Sbjct: 215 IDFDNKILNVNTALIRVNNDYKISNLKTDSSYRKLPLSNEIIKILKSHKSKQNINKIKYG 274 Query: 268 -----KWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGI-EDFRFHDLRHTWA 321 F T + + C+ I ++ R+HDLRH+ A Sbjct: 275 NNFVYSNKFDGDSTEYNLIFTWENGRYIIPSNFLQRLKRLCKYCKIEKNIRWHDLRHSNA 334 Query: 322 SWLIQSGVPLSVLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIF 368 + L+++ + + V+QE G ++ YAH+ E I ++ Sbjct: 335 TILLKNKISMKVIQERLGHSLMQTTSDIYAHVTEEMNREATDVISNVL 382 >UniRef50_B9JRM6 Integrase protein n=1 Tax=Agrobacterium vitis S4 RepID=B9JRM6_AGRVS Length = 343 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 105/369 (28%), Positives = 159/369 (43%), Gaps = 51/369 (13%) Query: 1 MSL--FRR--NEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPD 56 MSL +R + WY ++ G + E+ GT DK++A+E+ +R+ E+ G Sbjct: 1 MSLKLIKRHGGKNWYIRGTIR-GVSVDETTGTDDKKRAEEIRIRRETEILDRRIHGIRKT 59 Query: 57 VTFEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTK 116 TF EA + +LEE + ++ +F L +I + I A ++ Sbjct: 60 ATFLEASVMYLEEGGASR-------FVDVVARYFGTTPLSEIDQPAIDRAARVLYPDA-- 110 Query: 117 EIWKQKVQAAIRKGKELPVYEPKPVSTQTKAK-HLAMIKAILRAAERDWKWLEKAPVIKI 175 T+ + + A+L A + K +K P+I+ Sbjct: 111 -------------------------KASTRNRQVFTPVSAVLNFAAKK-KMCDK-PIIER 143 Query: 176 PAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAW 235 PA R+RW+ EEA+ LID C LK +V F TG R S + L+W+ +D+ R Sbjct: 144 PAQPKGRIRWITIEEAQSLIDACAPHLKPLVTFLFYTGARLSEALYLDWRDVDLSRS--H 201 Query: 236 VNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDS 295 V ++K+ GV L+ +L + VF +R DG Sbjct: 202 VAFLDTKTGDDRGVPLHSGVVAMLANL-PHREGAVF------RRHDGKPYEVKEDGGGQI 254 Query: 296 KTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPN 355 KT + ACRRAGI DF HD RHTWA+W + L L +GGW+S MV RYAH+ + Sbjct: 255 KTGFKGACRRAGISDFHPHDCRHTWATWHYAANRDLITLMRLGGWKSERMVLRYAHINVD 314 Query: 356 HLTEHARKI 364 L I Sbjct: 315 DLASSIESI 323 >UniRef50_C5UVC6 Site-specific recombinase, phage integrase family n=2 Tax=Clostridium RepID=C5UVC6_CLOBO Length = 385 Score = 235 bits (599), Expect = 3e-60, Method: Composition-based stats. Identities = 69/411 (16%), Positives = 142/411 (34%), Gaps = 68/411 (16%) Query: 1 MSLFR--RNEIWYASY---SLPGGKRIKE-SLGTKDKRQAQELHDKRKAELWRVEKLGDL 54 M+ ++ W + GKR + G + K+ A+ + + Sbjct: 1 MASYKMLDKGNWKVTISLGYDNTGKRRRVIKQGFRTKKLAEAFATQILDKKNHGFVSPTD 60 Query: 55 PDVTFEEACLRWLEEKADK-----KSLDSDKSRIEF-WLEHFEGIRLKDISEAKIYSAVS 108 D+ F+ ++W + + + SRI + ++KDIS + + + Sbjct: 61 SDLLFKNFIMKWYDMHTTSLKLSVNTRNDYLSRINTNLIPLLGNYKIKDISIDVVQNFYN 120 Query: 109 RMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLE 168 + N K + T K+L ++ + L+ A+ + Sbjct: 121 TLINE-------------------------KHLKPTTVKKYLDILSSCLKYAQSK-DLIY 154 Query: 169 KAPV--IKIPAVRNKRVRWLEKEEAKRLIDECPE-PLKSVVKFALATGLRKSNIINLEWQ 225 K P IK ++ ++ + +EE ++ L + + + TGLR + L W Sbjct: 155 KLPTSYIKKVKIQKPKIEYWNQEEVNFFLNYIKNTYLYTPIFIDILTGLRIGELCGLRWC 214 Query: 226 QIDMQRRVAWVNP-------------EESKSNRA-IGVALNDTACKVLRDQIGKH----H 267 +D+Q + VN + K++ + + + L++ Sbjct: 215 DVDLQNGIITVNHQLIHDKRLKVLLLADLKTSSSHRSITIPKILIDYLKELKANRQATNT 274 Query: 268 KWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAG--------IEDFRFHDLRHT 319 ++V + + K + + K K S + ++ FH LRHT Sbjct: 275 EYVVLDRQDFKYIPRSLSMNFTKKVAKYKKSIDDFKKANEEVPHGYMQLKQISFHGLRHT 334 Query: 320 WASWLIQSGVPLSVLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIFG 369 A+ LI +G + V+ E G I M Y H+ + A +++IF Sbjct: 335 HATLLIANGENVKVVSERLGHTDIRMTLNTYTHVLDSMKNNTANLLNNIFK 385 >UniRef50_C4XTG1 Site-specific recombinase n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XTG1_DESMR Length = 409 Score = 235 bits (599), Expect = 3e-60, Method: Composition-based stats. Identities = 86/418 (20%), Positives = 155/418 (37%), Gaps = 72/418 (17%) Query: 5 RRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLG------------ 52 RR + +++ GK ++E +G + E + E+ + + G Sbjct: 24 RRPDRYFSIRYRCRGKNMEEGIGWASEGWTAEDASRILGEIRQNIRRGTGPQSLRDMARA 83 Query: 53 --------DLPDVTFEEACLRWLEE-KADKKSLDSDKSRI-EFWLEHFEGIRLKDISEAK 102 + +TF E R+L+ K +K S D+ + + L F ++ Sbjct: 84 ARGEADAAEAAPLTFGELARRYLDWAKRNKSSWKEDEYLLAKRVLPLFAHRPATSLTRTD 143 Query: 103 IYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAER 162 + + +S T HL +I+ + A Sbjct: 144 TEQFRDALLD-------------------------AGGLSPMTIKHHLVVIRRVYNWAAS 178 Query: 163 --------DWKWLEKAPV--IKIPAVRNKRVRWLEKEEAKRLIDECPEPL---KSVVKFA 209 + + PV I++P V N+R+R+L +EEA RL++ E L ++ A Sbjct: 179 TPVADDPGHMLFEGRNPVSGIRMPLVDNERIRFLTREEADRLLEAAGERLPEMHDIILLA 238 Query: 210 LATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGK-HHK 268 L TG+R+ I+ L WQ +D+ R+ + +++ R+ L++ +L+ + Sbjct: 239 LLTGMRRQEILGLMWQDVDLVNRIISIPARLTRAKRSRKAFLDEETAAMLQARREHAQSP 298 Query: 269 WVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIED----FRFHDLRHTWASWL 324 +VF +R T + G+ D FH LRHT+ASWL Sbjct: 299 FVFPGAVDGRRDPDHVTRQFDALVNGIGL-------NNGVTDPKHKVVFHTLRHTFASWL 351 Query: 325 IQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIFGDNVPNMSHSEIME 382 Q+G + L E+ G +SI ++RYAHL P A + + Sbjct: 352 AQAGADIHHLMELTGHKSISTMQRYAHLMPGKTRAIASLVSRRASPAPKGVPPGSSES 409 >UniRef50_C6QSP6 Integrase family protein n=1 Tax=Geobacillus sp. Y4.1MC1 RepID=C6QSP6_9BACI Length = 399 Score = 233 bits (596), Expect = 6e-60, Method: Composition-based stats. Identities = 83/420 (19%), Positives = 146/420 (34%), Gaps = 68/420 (16%) Query: 2 SLFRRNEIWYASYSLPG----GKRIKESLGTKDKRQA------------QELHDKRKAEL 45 S+ RR + + G GKR++ + + + +A E K K E+ Sbjct: 3 SIQRRGKSSFLLVVEAGYDAKGKRLRRTKTIRIEDEALLKTTKKLRDYLNEELLKFKMEV 62 Query: 46 WRVEKLGDLPDVTFEEACLRWLEEKADKKSLDSDKSRI-----EFWLEHFEGIRLKDISE 100 E + + + W + A K+ ++ + L +R+ I Sbjct: 63 EAGEYIAP-EKMKLADFIKEWETKYAVKELSETTLNNYLSHIKNHILPALGHMRIDQIKP 121 Query: 101 AKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAA 160 I + + ++ + KP++T+T I+ IL+ A Sbjct: 122 VHIVNFLDQIK---------------------RADGKKKPLATRTIENAYLTIRNILQRA 160 Query: 161 ERDWKWLEKAPV--IKIPAVRN---KRVRWLEKEEAKRLIDECPE---PLKSVVKFALAT 212 +W+ ++ P +K P + K V+ +++E + L + A+A Sbjct: 161 V-EWQIIKSNPASAVKKPKSKKEAVKEVQVYDEKEVEALFRAVQNEPFHWRIFTTLAIAA 219 Query: 213 GLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRA------------IGVALNDTACKVLR 260 GLR+ ++ LEW ID+++ V +N K + V+L + L+ Sbjct: 220 GLRRGELLALEWSNIDLEKGVIRINKAIVKGRKRSVEKSPKTKKSNRLVSLPKSVVAELK 279 Query: 261 DQIGKHHKWVFVHTKAAKRADGTSTPAVRK---MRIDSKTSWLSACRRAGIEDFRFHDLR 317 K K + T W +RAGI R HDLR Sbjct: 280 LYRRHWLKQKLQAGDLWKEEKEYLFCNIDGRHFYPTTPTTWWRRFTKRAGIRYIRLHDLR 339 Query: 318 HTWASWLIQSGVPLSVLQEMGGWESIEMVR-RYAHLAPNHLTEHARKIDDIFGDNVPNMS 376 HT A+ LI GV ++ E G I + Y H E A K+D +F + M Sbjct: 340 HTSATLLINQGVHAKIIAERLGHSDIRVTMDIYGHALQKADHEAANKLDHLFTNTSSQMK 399 >UniRef50_Q0K8W4 Phage integrase family protein n=1 Tax=Ralstonia eutropha H16 RepID=Q0K8W4_RALEH Length = 348 Score = 233 bits (596), Expect = 7e-60, Method: Composition-based stats. Identities = 81/384 (21%), Positives = 142/384 (36%), Gaps = 69/384 (17%) Query: 2 SLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLG--DLPDVTF 59 S+++R + W + G + K A+ + + E+ R + + T Sbjct: 3 SIWKRGDYWRVAIRKRGYPPQART--FDTKADAESWARQVEVEMDRGSFVDRREAERNTL 60 Query: 60 EEACLRWLEE-KADKKSLDSDKSRIEFWL-EHFEGIRLKDISEAKIYSAVSRMHNRKTKE 117 + LR+ EE KK + + RI + ++ ++ + + R Sbjct: 61 GDLLLRYSEEISPHKKGGEQEVLRIRKLRSDPIAHYKIAALTGKVLAAYRDR-------- 112 Query: 118 IWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKW-LEKAPV--IK 174 + E +PVS T + L +I +L A ++W L PV I+ Sbjct: 113 -------------RLKGDGERRPVSGSTVNRELTLISHVLNVANKEWDIHLAINPVSTIR 159 Query: 175 IPAVRNKRVRWLEKEEAKRLIDEC-----------------PEPLKSVVKFALATGLRKS 217 P R R L E RL E + + AL T +R+ Sbjct: 160 RPRESRGRTRRLGAAEEARLFAELSASPRNGRGHYDKGGSRNPSILPLTILALETAMRRG 219 Query: 218 NIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLR---DQIGKHHKWVFVHT 274 +++L W + ++ R ++ +SK+ + V L+ A L + VF + Sbjct: 220 ELLSLRWSDVFLEDRFVRLH--DSKNGESRDVPLSTKAVSTLAPLAELATSASDRVFPTS 277 Query: 275 KAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVL 334 A K ++ AC RAGIE+FRFHDLRH S + + + L Sbjct: 278 ADA-----------------VKKAFTRACERAGIENFRFHDLRHEGTSRIAERLDNVLEL 320 Query: 335 QEMGGWESIEMVRRYAHLAPNHLT 358 + G ++++M+RRY H L Sbjct: 321 SAVTGHKTLQMLRRYYHPRAKDLA 344 >UniRef50_C9R814 Integrase family protein n=2 Tax=Ammonifex degensii KC4 RepID=C9R814_AMMDK Length = 391 Score = 233 bits (596), Expect = 7e-60, Method: Composition-based stats. Identities = 79/401 (19%), Positives = 146/401 (36%), Gaps = 57/401 (14%) Query: 3 LFRRNE-IWYASYS---LPGGKRIKESLGTK-DKRQAQELHDKRKAELWRVEKLGDLPDV 57 + RR + W GK++ S + ++ A+ + + R E + Sbjct: 5 VRRRGKDSWQVIVYLGKDENGKKLYRSQTVRGTRQDAERALAELLVKAHRGELGRAPRGL 64 Query: 58 TFEEACLRWLEEKAD---KKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRK 114 T W+E +L + ++ W + ++ ++ A + A++R+ Sbjct: 65 TVAGLLNAWVEAHRRSWRPNTLANKRTAARAWGRLIGHLEVERLTPADVELALARLAEE- 123 Query: 115 TKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIK 174 + T + + + LR A + K L P Sbjct: 124 --------------------------YAPSTAKEVFSSFRQALRWARK-RKLLHHDPTEG 156 Query: 175 IPAVR--NKRVRWLEKEEAKRLIDEC-----PEPLKSVVKFALATGLRKSNIINLEWQQI 227 +PA R + + EEA R ++ + K+ + ALATG+R + L WQ + Sbjct: 157 VPAPRGETQEITPWTGEEAARFLEYLEKARMRKAYKAFFRLALATGMRLGELQALRWQDV 216 Query: 228 DMQRRVAWVNPE---------ESKSNRAIG-VALNDTACKVLRDQIGKHHKWVFVHTKAA 277 D++R V E K+ +A + ++ LR+ + + + Sbjct: 217 DLKRGEVCVRRTYSEAGKCFHEPKTKKARRRIPIDPVTTAWLREWRKEQLEERLRAGEGW 276 Query: 278 KRADGTSTPAVRKM---RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVL 334 +G + R D + ACR AG+ RFHDLRHT AS L++ V V+ Sbjct: 277 ADREGLVFTTRKGTVVDRDDLLRALRRACREAGVPGIRFHDLRHTHASLLLRQNVHPKVV 336 Query: 335 QEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIFGDNVPN 374 QE G S++ Y+HL P R + ++ + + Sbjct: 337 QERLGHASVKTTLDLYSHLLPGAQEPAVRAVAELLDRRIDS 377 >UniRef50_B5H9T3 TraSA integrase fusion protein n=4 Tax=Streptomyces RepID=B5H9T3_STRPR Length = 372 Score = 233 bits (595), Expect = 9e-60, Method: Composition-based stats. Identities = 81/400 (20%), Positives = 132/400 (33%), Gaps = 55/400 (13%) Query: 1 MS-LFRR-NEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLP-DV 57 M+ + +R N W A Y GK K AQ D+ A L + + Sbjct: 1 MANIQKRPNGKWRARYRDLDGKEHARH--FDRKIDAQRWIDEVTASLVTGQYVDPRSAKK 58 Query: 58 TFEEACLRWLEEKADK-KSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMHNRKT 115 F+E W + + + + + + +E L I + S V+ + Sbjct: 59 PFKEYAEEWRAIQPHRPSTAKAVAQHLRCYVYPAWEKRSLGAIKPGDVQSWVTSLTTTH- 117 Query: 116 KEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVI-- 173 ++ T + A+ RAA RD + + P Sbjct: 118 ------------------------GLAASTSRTVFNTVNAVFRAAVRD-RMIPHNPCAEA 152 Query: 174 KIPAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRV 233 K+P+V K++ L E+ + L DE P K +V ATGLR + L+ + +D+ Sbjct: 153 KLPSVPRKKIVPLAVEQVRTLSDEIPARYKGLVLLGAATGLRPGELFGLQLRHVDLLHAT 212 Query: 234 AWVNPEE------------SKSNRA-IGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRA 280 V + K+ R+ V L A ++ + F Sbjct: 213 VSVEQQIQQTAKHGVYVCPPKTARSHRTVPLPRMAVDAMKAHLRD-----FPADGPEGWI 267 Query: 281 DGTSTPAVRKMRIDSKTSWLSACRRAGIEDFR-FHDLRHTWASWLIQSGVPLSVLQEMGG 339 SW AC +AGI H LRH +AS LI+ G + + E G Sbjct: 268 FTAPQGGPVVYTHFMDGSWRPACAKAGIPKGTGPHALRHHYASLLIRHGESVKTVSERLG 327 Query: 340 WESIEMV-RRYAHLAPNHLTEHARKIDDIFGDNVPNMSHS 378 + M Y HL P+ +D + D + Sbjct: 328 HTNAAMTLNIYTHLWPDSEERTRAAVDKAYADQSADAQPQ 367 >UniRef50_D2SF19 LigA n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2SF19_9ACTO Length = 397 Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats. Identities = 75/369 (20%), Positives = 132/369 (35%), Gaps = 56/369 (15%) Query: 9 IWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGD-LPDVTFEEACLRWL 67 + A Y PGG++ + K AQ D+ + L VT + RWL Sbjct: 16 RYRARYRDPGGRQHERR--FVRKVDAQRWLDEATSALVTQTWTAPARGRVTVADWADRWL 73 Query: 68 --EEKADKKSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQ 124 + +L + + L + +L D++ A + V+++ Sbjct: 74 ASQTGVKPSTLYRYGNLLRTHVLPTWGKHQLADVTHADVAVWVAKLL------------- 120 Query: 125 AAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVR--NKR 182 + + T + + +L A RD + + + P ++P R Sbjct: 121 -------------GQGSAAGTVRQAHRVFSLLLGLAVRDGR-IPRNPAERVPLPRVIRSE 166 Query: 183 VRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWV------ 236 R+L +E +RL D V++ TGLR + L +++D RR + Sbjct: 167 PRFLTHDEVERLADAAGAE-GDVIRLLAYTGLRFGEMAALRVRRVDFLRRRLTIAEAVTE 225 Query: 237 -----NPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKM 291 K+++ V L T + L + + T++ V ++ Sbjct: 226 VGGRLEFGTPKTHQQRTVPLPATLAEPLARRCE--------GKQGDDLLVTTASGTVLRL 277 Query: 292 RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMV-RRYA 350 R + + A R AG+ D HDLRHT AS + SG + +Q M G S M Y+ Sbjct: 278 RNWRRVVFDPAVRAAGLSDVTPHDLRHTAASLAVSSGATVKAVQRMLGHASAAMTLDVYS 337 Query: 351 HLAPNHLTE 359 L + L Sbjct: 338 GLVDDDLAA 346 >UniRef50_C6MQB4 Integrase family protein n=1 Tax=Geobacter sp. M18 RepID=C6MQB4_9DELT Length = 340 Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats. Identities = 75/385 (19%), Positives = 151/385 (39%), Gaps = 72/385 (18%) Query: 1 MSLFRRN--EIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGD---LP 55 MS+++R ++Y ++++ G R+ +S G K++A+ + ++ L Sbjct: 1 MSVYKRGDKGVFYMNFTV-NGVRVFKSTGKFTKKEAKHAEAMERQKMMEQASLTPQEIAA 59 Query: 56 DVTFEEACLR-WLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRK 114 EA + + + K ++R +E +++ I+E + + ++ Sbjct: 60 RTLLSEAIEQVYQTRWKNNKDGKQSRTRALRLIELIGDVQVGAINEDVVRKIIFKL---- 115 Query: 115 TKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIK 174 E V + T ++L ++K ILR ++W ++ Sbjct: 116 ----------------------EATKVKSATVNRYLEVLKTILRYKRQEWDFI------H 147 Query: 175 IPAVRNKRVRWLEKEEAK---RLIDECP--------EPLKSVVKFALATGLRKSNIINLE 223 + R+R L K E RL+ E + +V+ L TG R S ++NL Sbjct: 148 LKKQPKGRIRVLSKPEEDKAIRLLRETDHCSRRHFYPQVADLVEILLDTGCRLSEVLNLP 207 Query: 224 WQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGT 283 + ++ + + +K +R + + ++L+++ + K F Sbjct: 208 YDDVNFDTNLISIWI--NKGDRPRSIPMTYRVRRILQERQKTNKKKPFS----------- 254 Query: 284 STPAVRKMRIDSKTSWLSACRRAGIED---FRFHDLRHTWASWLIQSGVPLSVLQEMGGW 340 + +W + +E F H LRHT A+ L+ GV L V++E G Sbjct: 255 ------VTIYQAGKAWAWVRKEMKLERDTEFVLHALRHTCATRLVNKGVDLYVVKEWLGH 308 Query: 341 ESIEMVRRYAHLAPNHLTEHARKID 365 SI++ RYAHLAP+ L A ++ Sbjct: 309 SSIQVTERYAHLAPDKLAHAAAVLE 333 >UniRef50_Q2W123 Integrase n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2W123_MAGSA Length = 363 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 72/360 (20%), Positives = 137/360 (38%), Gaps = 55/360 (15%) Query: 9 IWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLP--DVTFEEACLRW 66 W A G ++ K A + E+ R + P +T +A + Sbjct: 47 GWQAKIRRHGFPTQSKT--FDRKTDADAWARSLEGEMDRGAFIDRRPAEQMTLADAIRHY 104 Query: 67 LEEKADK-KSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQA 125 L+ A K D + +R+ +L A+S + ++ ++++A Sbjct: 105 LDAVAPTHKGADVEAARLGRFLRE---------EPDLCRYALSNLRTHHIEDYRDRRLEA 155 Query: 126 AIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKIPAVRNKRV 183 V+ + + + ++ A+L + R ++ PV ++ P V ++R Sbjct: 156 ---------------VAPGSLCREINLLHAVLESVRRRVGLVD-NPVSHVRRPKVNDERD 199 Query: 184 RWLEKEEAKRLIDEC----PEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPE 239 L +E +L+ +K V AL T +R+ ++ L W+ +D+ ++ A + Sbjct: 200 VRLSLDEEAQLLSALDATRNPWIKPFVIVALETAMRRGEMLALRWEHVDLVQQTAHL--P 257 Query: 240 ESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSW 299 E+K+ + V L+ A K L VF K +W Sbjct: 258 ETKNGKGRTVPLSSRAVKTLEALPRSIGGAVFP-----------------VSLDSLKHAW 300 Query: 300 LSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTE 359 A RAG+ F HDLRH S L + G + L + G + ++M++RY +L L + Sbjct: 301 TRARDRAGLHHFHLHDLRHEATSRLAERGWNILELAAVTGHQDLQMLKRYTNLRAADLAK 360 >UniRef50_C8R239 Integrase family protein n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R239_9DELT Length = 332 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 65/369 (17%), Positives = 136/369 (36%), Gaps = 54/369 (14%) Query: 1 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKL--GDLPDVT 58 M+ F + + + + + A+ + +A + R + T Sbjct: 1 MATFEKRGQYQIRAKVRKHGYRTITKTFNNVADAKAWARQVEAAMDRGAYIPVAAAEKNT 60 Query: 59 FEEACLRWLEEKADK--KSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTK 116 R+ +E + ++ + +R+ E + L + A++ + Sbjct: 61 LRMVLERYRKEICPRLARAGRDEFARLNRLTEALGDLSLAALQPAEVARYRDQ------- 113 Query: 117 EIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKA----PV 172 + QT L ++ +L+A DW Sbjct: 114 -------------------RLKAGAAPQTVKHDLGLLNRVLKACVMDWGIPLPHGIVTAQ 154 Query: 173 IKIPAVRNKRVRWLEKEEAKRLIDEC----PEPLKSVVKFALATGLRKSNIINLEWQQID 228 ++ P+ + R R LE E ++L+ ++ ++ AL T R++ I ++ W+ I+ Sbjct: 155 VRKPSPPSGRDRRLESREEEKLLAAAQASKSREIEKIITIALETAARRAEIASMRWEHIN 214 Query: 229 MQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAV 288 + +R+ ++ +K+ A V L+ A VL+ + V+ + Sbjct: 215 LDKRIWFIPAAATKTKTARTVPLSTGAMAVLQGLPRRIDGQVWSFS-------------- 260 Query: 289 RKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRR 348 ++ C+RA IED RFHDLRH S L + G+ + + + G + ++M++R Sbjct: 261 --HPDGITQAFDRICKRAEIEDLRFHDLRHEATSRLFEKGLNMMEVAAITGHKDLKMLKR 318 Query: 349 YAHLAPNHL 357 Y HL L Sbjct: 319 YTHLKAEDL 327 >UniRef50_B3T0I4 Putative Phage integrase family protein n=2 Tax=root RepID=B3T0I4_9ZZZZ Length = 422 Score = 231 bits (591), Expect = 3e-59, Method: Composition-based stats. Identities = 84/401 (20%), Positives = 150/401 (37%), Gaps = 50/401 (12%) Query: 11 YASYSLPGGKRIKESLGTK----DKRQAQELHDKRKAELWRVE-----KLGDLPDVTFEE 61 Y + GG++ ++G +A+ + + + + D T E Sbjct: 48 YMLKTAIGGRQRWFTIGRHGSPWTVEKARTRAKRIIGNIADGKDPAKDRDADKNKPTVAE 107 Query: 62 ACLRWLEEKADKKSLDS-----DKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTK 116 C R+LE+ A + S K+ L + ++ A I + + K+ Sbjct: 108 LCERYLEDYAKEHKKPSSLKSDQKNIENHVLPLLGREFVASVTFADIDRFKRAVKDGKSS 167 Query: 117 EIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKW--LEKAPVIK 174 K + Q V K V+ + LA++ + AER W W + P Sbjct: 168 RERKPEHQGGPN------VTGGKGVA----NRCLALLSKMFNLAER-WGWCSVGSNPCRH 216 Query: 175 IPA-VRNKRVRWLEKEEAKRLIDECP------EPLKSVVKFALATGLRKSNIINLEWQQI 227 + NKR ++L +E L + + ++ + TG R I++LEW + Sbjct: 217 VDRYPENKREKFLSDKELAALAEVLNKSESENPYAVAAIRMLIFTGARLGEILHLEWAHV 276 Query: 228 DMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIG-KHHKWVFVHTKAAKRADGTSTP 286 DM+R + + + K+ + V L+ A VL + K++ V K Sbjct: 277 DMERAMLLL--PDPKTGQK-AVFLSAPALDVLANLPHMKNNPHVICGEKDGSHL------ 327 Query: 287 AVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMV 346 ++ + W +RAG+ED R HDLRH++AS G+ L ++ ++ G Sbjct: 328 ------VNLQKPWGRIRKRAGLEDVRLHDLRHSFASVAASGGLSLPMIGKLLGHTQAATT 381 Query: 347 RRYAHLAPNHLTEHARKIDDIFGDNVPNMSHSEIMEDIKKA 387 RYAHLA + L I + + +KA Sbjct: 382 ARYAHLAADPLKAANEAIGQRIAAVMRGEGAEVVDLGKRKA 422 >UniRef50_D0ADR3 Predicted protein n=2 Tax=Enterococcus faecium RepID=D0ADR3_ENTFC Length = 382 Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats. Identities = 65/413 (15%), Positives = 136/413 (32%), Gaps = 76/413 (18%) Query: 1 MSL---FRRNEI---W----YASYSLPGGKRIKESL-GTKDKRQAQELHDKRKAELWRVE 49 M+ +++ W Y GK+++ + G K K++AQ K + E Sbjct: 1 MATFEQYKKKNGEKLWKFQTYLGVDPLTGKQVRTTRRGFKTKKEAQLALTKLQLEYENNG 60 Query: 50 KLGDLPDVTFEEACLRW---LEEKADKKSL-DSDKSRIEFWLEHFEGIRLKDISEAKIYS 105 L ++TF+E W E+ + S + + L F ++ I+ Sbjct: 61 -LNKTKELTFQEVYDLWIVNYEQTVKESSFVKTKEQFANHILPAFGAYKINKITIDIAQK 119 Query: 106 AVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWK 165 + + I A + Sbjct: 120 FANEKVKKFVLYREF-------------------------INNA----SRICDYAIK-LG 149 Query: 166 WLEKAPVIKIPAVRNKR-------VRWLEKEEAKRLIDECPE----PLKSVVKFALATGL 214 +L+ P+ KI + K + + KEE + + + + S + TG+ Sbjct: 150 YLQDNPLKKITVPKRKVSVHEEDTLNFFSKEELEIFLKSVEKKKDIRMYSFFRTLAFTGM 209 Query: 215 RKSNIINLEWQQIDM--------------QRRVAWVNPEESKSNRAIGVALNDTACKVLR 260 R ++ L W+ ID + R +V ++K+++ + ++D +L+ Sbjct: 210 RVGELLALTWKDIDFNDNYIKINKTLARGKNRRLYVEQPKTKNSK-RDIPVDDETMNILK 268 Query: 261 DQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDS---KTSWLSACRRAGIEDFRFHDLR 317 + KW+ + + + + ++ ++ H LR Sbjct: 269 KWRLEQRKWLLTLGINTLSKNQLVFSNQKNEYLQLSKPRKWLEVIIKQNNLKRITIHGLR 328 Query: 318 HTWASWLIQSGVPLSVLQEMGGWESIEMVR-RYAHLAPNHLTEHARKIDDIFG 369 HT AS L+++G + +QE G SI++ Y H+ + A + G Sbjct: 329 HTHASLLLEAGANIKDVQERLGHSSIQITMDLYIHITDKRKEKTATQFAKYIG 381 >UniRef50_D1BL69 Integrase family protein n=1 Tax=Veillonella parvula DSM 2008 RepID=D1BL69_VEIPT Length = 403 Score = 231 bits (589), Expect = 4e-59, Method: Composition-based stats. Identities = 58/406 (14%), Positives = 133/406 (32%), Gaps = 59/406 (14%) Query: 2 SLFRRNEIWYASYSL-PGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFE 60 + ++ W +S+ + I+ + K + +L + + + + + Sbjct: 15 TFYQSQGKWRGQFSITKDNQLIRRAFSGNSKLEVYKLGKQWIEATQQNTSIFSSKNTKLK 74 Query: 61 EACLRWLEEKAD----KKSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMHNRKT 115 + C WL++ K+ S + + L I++ I+ ++ + ++ N Sbjct: 75 DICNYWLQDVKKVSVKPKTFQKYDSTLRLYILPLLGEIKIASITPQQVQTVLNNWSNGTL 134 Query: 116 KEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAP--VI 173 K + +S+ T + + A L K P + Sbjct: 135 K------------------GKKGHIISSSTIRCTRRYLSELFEYAVNI-GLLLKNPIKLT 175 Query: 174 KIPAVRNKRVRWLEKEEAKRLIDECPEPL---------------KSVVKFALATGLRKSN 218 K P + + L +E +L + + K AL TG+R Sbjct: 176 KAPRLITTEIHTLSLDEIHQLTSTMKQQVSNNISSPYRINYYSSYIATKIALGTGMRLGE 235 Query: 219 IINLEWQQIDMQRRVAWVNPE-----------ESKSNRAIG-VALNDTACKVLRDQIGKH 266 + L W +D+ V ++K+ + + ++ L Sbjct: 236 VFGLCWDCVDLIHGHISVRRTIQTGTKGQIFQDTKTKTSRRCIPISQELQSELTTYKEFQ 295 Query: 267 HKWVFVHTKAAKRADGTSTPAVRKMRIDSK----TSWLSACRRAGIEDFRFHDLRHTWAS 322 + + G + + ++ ++ ++ FHDLRHT A+ Sbjct: 296 SNYAKELGDKWTDSYGVVISGTFGKILSTSNFKSRYFIPILKQLNLDHITFHDLRHTHAT 355 Query: 323 WLIQSGVPLSVLQEMGGWESIE-MVRRYAHLAPNHLTEHARKIDDI 367 L+ + ++QE G +I + Y+HL P+ E + +D++ Sbjct: 356 LLLSQKINPKIVQERLGHSTITLTLDTYSHLVPDIQKEAVKALDNL 401 >UniRef50_A6VBP4 Site-specific recombinase, phage integrase family n=2 Tax=Pseudomonas RepID=A6VBP4_PSEA7 Length = 404 Score = 231 bits (589), Expect = 4e-59, Method: Composition-based stats. Identities = 85/396 (21%), Positives = 152/396 (38%), Gaps = 75/396 (18%) Query: 11 YASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRWLEEK 70 Y G KR +G QA++ + +L + G+ V Sbjct: 42 YVLRWARGKKRTLGRVGVLTLDQARK---EALQDLAEAREHGEPLAVALG---------- 88 Query: 71 ADKKSLDSDKSRIEFWLEHFEGIRLKD--ISEAKIYSAVSRMHNRKTKEIWKQKVQAAIR 128 + + + I+ + LK + I + + +++ EI ++ ++ Sbjct: 89 RKNSTTPTLRDFIDDHYSPWMDTHLKSASKTLNLINVGFAEIMSKRLTEITQRDLETLRI 148 Query: 129 KGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRN---KRVRW 185 + + T + +A ++ L A +W +L+ P+ ++ ++ RVR+ Sbjct: 149 SWQAAGNTD------STANRKMASLRGALSRAV-EWGFLDDHPMARLKQIKTDRAGRVRY 201 Query: 186 LEKEEAKRLIDECPE----------------------------------PLKSVVKFALA 211 L +E KRL + LK +V +L Sbjct: 202 LLPDEEKRLRQAMEDRQESIRTDRDSANQWRAERKKERLADLREVLFVDHLKPLVLLSLN 261 Query: 212 TGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHH---K 268 TG+R+ + NL W ID+ ++ V E +KS + + LN A + L+ +H Sbjct: 262 TGMRRGEVFNLTWADIDLTNKLVTVEGEGAKSGQTRHIPLNKEALETLKGWRKQHPRNTG 321 Query: 269 WVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSG 328 +VF + + K SW + A + FR+HDLRHT+AS L+ +G Sbjct: 322 YVFPGKDGERLD-------------NVKKSWEGLLKLANVTGFRWHDLRHTFASKLVMAG 368 Query: 329 VPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKI 364 VPL+ ++E+ G I M RYAHLAP+ I Sbjct: 369 VPLNTVRELLGHSDITMTLRYAHLAPDSKAAAVELI 404 >UniRef50_B1FJ84 Integrase family protein n=1 Tax=Burkholderia ambifaria IOP40-10 RepID=B1FJ84_9BURK Length = 332 Score = 231 bits (589), Expect = 5e-59, Method: Composition-based stats. Identities = 87/376 (23%), Positives = 144/376 (38%), Gaps = 64/376 (17%) Query: 1 MSLFRRNEI------WYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDL 54 M+ R + W A L G +S K QA++ + E+ R + Sbjct: 1 MATITRRDTQSPEHRWQAKVRLKGFPAQSKS--FPTKVQAEDWARAVETEMRRGTFVDTA 58 Query: 55 P--DVTFEEACLRWLEEKAD-KKSLDSDKSRIEFWLEHFE-GIRLKDISEAKIYSAVSRM 110 + T + ++ E + KKS + RI+ L+ F + +I+ A + Sbjct: 59 AARETTLGDLLQKYAERVSPTKKSGAGEAKRIQSMLKWFLCKYAVVNITPAVLAEWRDE- 117 Query: 111 HNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKW-LEK 169 + VS T + L ++ + A +W L Sbjct: 118 --------------------------RLQSVSGSTVNRELNLLSHVFSTAMIEWDIHLPV 151 Query: 170 APV--IKIPAVRNKRVRWLEKEEAKRLIDEC----PEPLKSVVKFALATGLRKSNIINLE 223 PV I+ P R R E E L+ EC + L V A+ TG+R+S ++ +E Sbjct: 152 NPVSRIRRPKHNKPRNRRTEGGEESLLLYECRKARNKHLYPAVLLAIETGMRRSEVVGIE 211 Query: 224 WQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGT 283 W ID++RRV W+ +SK+ VAL+ A + L + VF Sbjct: 212 WPNIDLKRRVLWL--PDSKNGEGRAVALSTRAAQALAAIATDRNGPVFPG---------- 259 Query: 284 STPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESI 343 K ++ A +RA I+ RFHDLRH S L + G+ + + G +++ Sbjct: 260 ------LTVDAIKCAYRRARKRAKIDGLRFHDLRHEATSRLFEKGLNPMEVASITGHKTL 313 Query: 344 EMVRRYAHLAPNHLTE 359 M++RY HL L + Sbjct: 314 SMLQRYTHLRAEDLAK 329 >UniRef50_A2SD71 Putative uncharacterized protein n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SD71_METPP Length = 334 Score = 231 bits (589), Expect = 5e-59, Method: Composition-based stats. Identities = 72/320 (22%), Positives = 143/320 (44%), Gaps = 29/320 (9%) Query: 53 DLPDVTFEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHN 112 + ++ A + + + R+++W+ G+ L D+++ +++A+ ++ Sbjct: 31 RDGSIALRHLIDAYMAAYAGRDTSRT--QRLDWWVAKLGGVSLADLTDDHVFTALEQLAT 88 Query: 113 RKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEK--A 170 ++ + + GK + + +P++ T ++ A + A+L A+R + Sbjct: 89 QRGRYFAGKD-----ADGKPVMKAKRRPLAPATLNRYQAALSAVLTWAQRRRIAPKNWQN 143 Query: 171 PV--IKIPAVRNKRVRWLEKEEAKRLIDECP----EPLKSVVKFALATGLRKSNIINLEW 224 P +++ A +N+ VR+L E L+ C L +V L TG R+ + L W Sbjct: 144 PCRHVELKAEKNEIVRFLSDAERTALLAACRKSSWPRLYLLVMMGLTTGARRGELEALRW 203 Query: 225 QQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTS 284 +D++R A V+ SK+ + L L G + VF T+ Sbjct: 204 ADVDLERAEAAVHR--SKNGDKKVLPLVPAVVDELAKHAGAANALVFPSTR--------- 252 Query: 285 TPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIE 344 + + +W A + AG++ FRFHDLRH+ AS L Q+G L + E+ G + Sbjct: 253 ---RPDIAYNFDPAWDRALKAAGVKSFRFHDLRHSCASALAQNGATLLEIAEVLGHRQLS 309 Query: 345 MVRRYAHLAPNHLTEHARKI 364 + +RY+HLA +H T+ ++ Sbjct: 310 VTKRYSHLATDHKTKLINRV 329 >UniRef50_D2S8K7 Integrase family protein n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2S8K7_9ACTO Length = 377 Score = 230 bits (588), Expect = 5e-59, Method: Composition-based stats. Identities = 73/394 (18%), Positives = 145/394 (36%), Gaps = 55/394 (13%) Query: 2 SLFRR-NEIWY--ASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 S+F+R N WY +Y G+ + + + + + + + + + + D +T Sbjct: 10 SIFKRANGRWYSALTYRDDFGEVKRREVSGRTQAEVRAKLRELRERVEAGAPVKDAS-IT 68 Query: 59 FEEACLRWLEEK-----ADKKSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMHN 112 W + + ++D + + + L + + + + V Sbjct: 69 MAAWLEDWTTKALPASDRKQATIDLYATIARSHLVPKLGSLPLDRLRPSNVEALV----- 123 Query: 113 RKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV 172 +S + A+++A L A RD +++ P Sbjct: 124 ---------------------LAKRRAGLSASSVRTIYAVLRAALDVAVRD-GLIQRNPA 161 Query: 173 --IKIPAVRNKRVRWLEKEEAKRLIDECP-EPLKSVVKFALATGLRKSNIINLEWQQIDM 229 +K PAV K +L ++A+ L++ + L+++ + LATGLR+ + L W+ +D+ Sbjct: 162 ALVKRPAVERKDAGYLSAQQAEALLEAVRGDRLEALYRVMLATGLRRGEALALHWRDVDL 221 Query: 230 QRRVAWVNPE-----------ESKSNRAI-GVALNDTACKVLRDQIGKHHKWVFVHTKAA 277 V V E K+ ++ V L A + LR + Sbjct: 222 DAAVVRVRWTLSRTSAGLELGEPKTEKSRRTVPLPVPAVETLRAHRKRQAAEQLAAGSLW 281 Query: 278 KRADGTSTPAVRKM--RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQ 335 + + T + + + + RAG+ H LRH+ AS+L+ +G V+Q Sbjct: 282 QASGLVFTSEIGTPLEPRNVLRRFEALAERAGLRGVHLHTLRHSAASFLLAAGTHTKVVQ 341 Query: 336 EMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIF 368 E G S + Y+H+AP E A K+ Sbjct: 342 EHLGHSSYAITADIYSHVAPAQQREAADKLGQAI 375 >UniRef50_A5IH69 Site specific recombinase n=2 Tax=Legionella pneumophila RepID=A5IH69_LEGPC Length = 407 Score = 230 bits (588), Expect = 6e-59, Method: Composition-based stats. Identities = 86/407 (21%), Positives = 154/407 (37%), Gaps = 82/407 (20%) Query: 3 LFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVE----KLGDLPDVT 58 +F + Y G K ++G QA+E + + + + G T Sbjct: 34 VFPSGTMRYVCQYKRGKKINLGTVGVMTAAQAREKAIEVLSNANKGIEPTAQKGINKPKT 93 Query: 59 FEEACLRWLEEKA---DKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKT 115 +E + K+ ++ I + F L +I+ A + + N Sbjct: 94 LQEFIESDYKPWVLSTHKRGQETLAGLIRCYKAFFSK-PLGEITPALVEQWRVKRLNE-- 150 Query: 116 KEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKI 175 S T ++++M+K+++ A +W +L++ + K+ Sbjct: 151 ------------------------GTSQATLNRNISMLKSLMTKAV-EWGFLKENALGKL 185 Query: 176 PAV---RNKRVRWLEKEEAKRLIDECPEP------------------------------- 201 R+ ++R+L E RL + E Sbjct: 186 KPYKIDRSPKIRYLSFAEEARLREALIERDNQLRLMRKNGNLWREKRGYDLLPELSEDNA 245 Query: 202 ---LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKV 258 L +V ++ TGLR+ + +L W +++ ++ E +K+ + + LND A K+ Sbjct: 246 CDYLMPMVLLSINTGLRRGELFHLTWDMVNLSEGSLILSGEITKNKHSRYIPLNDEAYKI 305 Query: 259 LRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRH 318 L + K A ++ + K SW S ++A I FR+HDLRH Sbjct: 306 LDNLHKK----------AERKEGLVFPSKNNQPFNHVKRSWGSLLKKANITQFRWHDLRH 355 Query: 319 TWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKID 365 +AS L+ +GV L+ ++E+ G I M RYAHLAP H RKID Sbjct: 356 HFASKLVMAGVDLNTVRELLGHSDIAMTLRYAHLAPEHKVNAVRKID 402 >UniRef50_A5N1D5 Phage integrase-related protein n=2 Tax=Clostridium kluyveri RepID=A5N1D5_CLOK5 Length = 392 Score = 230 bits (588), Expect = 6e-59, Method: Composition-based stats. Identities = 67/385 (17%), Positives = 134/385 (34%), Gaps = 43/385 (11%) Query: 17 PGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRWLEEKADKKSL 76 G + G K K++AQ + + +E RWL+ + S Sbjct: 28 DGSRNQLRKRGFKSKKEAQLYIADVIMKSSNG-YNFSGDKILLKEYLKRWLKTEGSSLSP 86 Query: 77 DSDKSRIE---FWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKEL 133 + K E H I + ++ +I + + +K Sbjct: 87 STQKRYNEFCVHISNHLGEIPISKLTGLQIKEFYKNLEQPQVYSNFK------------- 133 Query: 134 PVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIP--AVRNKRVRWLEKEEA 191 K +S T K M+ L A RD +++ + I +V + + Sbjct: 134 -----KGLSRSTILKVHRMLHKALTDAVRD-GTIDRTVISNIKYGSVEKTETKVWDNSTF 187 Query: 192 KRLIDECPEPL-KSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNP------------ 238 +D+ E L V A TGLR+S I L+W+ ID+ +++ V Sbjct: 188 YSFLDKIKEELIYLPVLLAFETGLRQSEITGLKWEDIDINKKLLTVKRNYGYDALKKSLS 247 Query: 239 -EESKSNRA-IGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKM--RID 294 +++K+ + + L D + L+ Q + ++ KA + T + + Sbjct: 248 DKKTKTKSSLRVINLFDNTIENLKKQKQQQRLNKLLYGKAYIESGYICTTSNGNPINPLY 307 Query: 295 SKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMV-RRYAHLA 353 + ++ + RFHDLRH+ A+ L++ V ++ + G SI + Y H++ Sbjct: 308 ISKRFAQLVKKHNFKKIRFHDLRHSHATMLLKENVHPKIVSQRLGHSSIAITLDTYTHVS 367 Query: 354 PNHLTEHARKIDDIFGDNVPNMSHS 378 + ++ + + Sbjct: 368 TDIEKNALLSANEKISQYIEEKESN 392 >UniRef50_UPI00003841F3 COG0582: Integrase n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI00003841F3 Length = 394 Score = 230 bits (588), Expect = 6e-59, Method: Composition-based stats. Identities = 73/385 (18%), Positives = 131/385 (34%), Gaps = 57/385 (14%) Query: 3 LFRRNEIWYASYSLPGGKRIKESLGTK---DKRQAQELHDKRKAELWRV-----EKLGDL 54 + R + GG++ + ++G+ A+ K E+ E+ D Sbjct: 35 VTNRGAKSFILDYRIGGRQRRITIGSYPDWSVAAARTEAGNLKREVDLGNDPMGERHADR 94 Query: 55 PDVTFEEACLRWLEEKADKKSLDSDKSRIEFW----LEHFEGIRLKDISEAKIYSAVSRM 110 T + R+ + +K+ S W L ++ D++ I + + Sbjct: 95 AAPTMRDLWDRYKRDHLPRKAARSQADETMMWEKLVLPTLGKHKVGDVTHTDIEALHRDI 154 Query: 111 HNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKA 170 + + + + +++ A R W+W+EK Sbjct: 155 TVSRGTPVR--------------------------ANRVIEVVRRAFNLAIR-WEWIEKN 187 Query: 171 PVIKIPA-VRNKRVRWLEKEEAKRLIDECPEPL----KSVVKFALATGLRKSNIINLEWQ 225 P KR R+L EE RL ++ + TG RKS ++ W+ Sbjct: 188 PASGQLRNPEEKRQRYLSPEELSRLSAALTAHHEPVSADAIRMLMLTGARKSEVLGATWE 247 Query: 226 QIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHH-KWVFVHTKAAKRADGTS 284 D+ V +K + V ++ A +L+ +VF + Sbjct: 248 MFDLDAGVWTKPSAHTKQRKEHRVPVSANALTLLKRIRETAEGPYVFPGKGGDQPL---- 303 Query: 285 TPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIE 344 D K SW + C+ A I R HDLRH++AS L+ G L ++ M G ++ Sbjct: 304 --------TDVKRSWAAVCKAADITGARIHDLRHSFASLLVSGGASLPIIGAMLGHTQVQ 355 Query: 345 MVRRYAHLAPNHLTEHARKIDDIFG 369 +RYAHL L A + Sbjct: 356 TTQRYAHLYDEPLRAAADHVGKTID 380 >UniRef50_B0TI08 Phage integrase family protein n=14 Tax=root RepID=B0TI08_HELMI Length = 368 Score = 230 bits (587), Expect = 7e-59, Method: Composition-based stats. Identities = 65/396 (16%), Positives = 135/396 (34%), Gaps = 74/396 (18%) Query: 1 MSLFR--RNEIWYASYSLP---GGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLP 55 M +++ + + WY ++ G R + G K A + + Sbjct: 1 MPVYKDEKRKTWYCAFRYKDWTGTTRQHKKRGFAKKSDAVQYERDFIKKQSGG------C 54 Query: 56 DVTFEEACLRWLEEKADK---KSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMH 111 D+ F ++E+ + + + K I+ L F+ + + I+ A + + + Sbjct: 55 DMAFGSMVELYMEDCKTRLRPTTYEGKKYLIDSKILPVFKDMPVNAITPATVRKWQNGLL 114 Query: 112 NRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAP 171 + ++ S + AI A R + + P Sbjct: 115 DDESD------------------------YSPTYLKTINNQLSAIFNYARRYYGL-QTNP 149 Query: 172 VI---KIPAVRNKRVRWLEKEEAKRLIDECPEP--LKSVVKFALATGLRKSNIINLEWQQ 226 I + +++ +E + + ++ TG+R ++ L Sbjct: 150 AAVCGSIGKKNAESMQFWTTDEFRLFAAAISDKPASYAIFNTLFWTGMRSGELLALTLND 209 Query: 227 IDMQRRVAWV--------------NPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFV 272 ID + + + P+ KS + ++ ++L+D G+ + Sbjct: 210 IDFESKKISITKSYARVGNEDVISPPKTPKSR--RVITASEFLLEILKDYAGRLVDY--- 264 Query: 273 HTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLS 332 S + + C+ +G++ R HD+RH+ AS LI+ G Sbjct: 265 ---------EPSDRLFDYTKHFLASEMARGCKLSGVKKIRIHDIRHSHASLLIELGFSPL 315 Query: 333 VLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDI 367 ++ E G ES+E + YAHL PN E A K+D + Sbjct: 316 LISERLGHESVETTLQTYAHLYPNKHGEVADKLDAL 351 >UniRef50_Q72B79 Site-specific recombinase, phage integrase family n=2 Tax=Desulfovibrio vulgaris RepID=Q72B79_DESVH Length = 373 Score = 230 bits (586), Expect = 8e-59, Method: Composition-based stats. Identities = 73/365 (20%), Positives = 134/365 (36%), Gaps = 46/365 (12%) Query: 15 SLPGGKRIKESLGTKDKRQAQELHDKRKAE----LWRVEKLGDLPDVTFEEACLRWLEEK 70 GGK++ E++G K + + +AE + + F +A R+L Sbjct: 34 YRHGGKKVWETIGRKSEGVNAAYAARVRAERVKEVEAGRFIARDEMPVFRDALERYLTVH 93 Query: 71 ADKKSLDS-DKSRIEFWL-EHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIR 128 A KS +S + E + F ++ I I M Sbjct: 94 AKGKSSESHMRGYFEHHIAPLFGDAKMDRIKPIHIEELKRSMAE---------------- 137 Query: 129 KGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKIPAVRNKRVRWL 186 K S QT +A+++ + R + +P +++P V R+R+L Sbjct: 138 ----------KGRSPQTIRHAIALVRQVYRKCVAWGIYTGTSPTDGVEMPKVDAARLRFL 187 Query: 187 EKEEAKRLIDECPEP---LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKS 243 + EA L+ + +L TG+R ++ L+ +++ V V ++K+ Sbjct: 188 TEAEAASLLHALHRRSRQWHDIAYLSLYTGMRLGEVLGLQVGHVNVADGVIDVM--DAKA 245 Query: 244 NRAIGVALNDTACKVLRDQIGKHHKWVFVH-TKAAKRADGTSTPAVRKMRIDSKTSWLSA 302 + ++L + FV + R S+ R A Sbjct: 246 G-TRAAYMTAGVKEILAARCAGRDAKEFVFVQRGGGRVRYISSVFSRVADELFNDGVTDA 304 Query: 303 CRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHAR 362 + FH LRHT+ SWL Q GVPL + + G S+EM +RY+ L+P+ + Sbjct: 305 RHK-----VVFHTLRHTFGSWLAQRGVPLYTIAVLMGHSSLEMTKRYSKLSPDTKHDAMA 359 Query: 363 KIDDI 367 + ++ Sbjct: 360 LLPEL 364 >UniRef50_A5EQT5 Putative prophage integrase n=1 Tax=Bradyrhizobium sp. BTAi1 RepID=A5EQT5_BRASB Length = 386 Score = 230 bits (586), Expect = 8e-59, Method: Composition-based stats. Identities = 92/413 (22%), Positives = 159/413 (38%), Gaps = 68/413 (16%) Query: 3 LFRRNEI--WYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFE 60 L++R WY ++ G + E+ T + A+E+ KR+ E+ + G TFE Sbjct: 5 LYQRPNSPNWYIRGTVK-GVYVHETCETDVRAVAEEIRAKREWEILQSVVHGIKAGGTFE 63 Query: 61 EACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120 A + +LE + + ++ ++HF L I + A R++ Sbjct: 64 AAAVIYLENGGEAR-------FLQPLIDHFGITPLDKIDQTVADDAAKRIYP-------- 108 Query: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKH-LAMIKAILRAAERDW--KWLEKAPVIKIPA 177 ++ T + + A++ A + + K P Sbjct: 109 -------------------GLAPATLDRQFYTPLSAVINKAHQHGPKGFCSPV-KFKRPK 148 Query: 178 VRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVN 237 RVRW+ EA +LI+ C L+ +V F TG R + L+W+ +D+QR V Sbjct: 149 KPKGRVRWITHAEAHKLIEACAPHLRPLVAFLFYTGARCGEALWLDWRNVDLQRGE--VQ 206 Query: 238 PEESKSNRAIGVALNDTACKVLRDQIGKHHK-----------WVFVHTKAAKRADGTSTP 286 ++K+ R GV L+ +L + + + W+ + + + + Sbjct: 207 FLDTKNGRDRGVPLHPDIVAILANLPHREGEVFRKPGHKITKWLPSGSNSGELIETVEYT 266 Query: 287 AVRKMRI-------------DSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSV 333 K + +AC RAGI DF HD RHTWA+W + L+ Sbjct: 267 LGEPYAPLDPDDERDVSAGSRIKKGFKAACDRAGITDFHPHDCRHTWATWHYRQNRDLNR 326 Query: 334 LQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIFGDNVPNMSHSEIMEDIKK 386 L+E+GGW S+EMV RYAHL + I G + + ++ Sbjct: 327 LKELGGWSSLEMVLRYAHLNVEDAAPSIHNMPSI-GPAPATKQPGQNVSPARR 378 >UniRef50_C1IAU4 Phage integrase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1IAU4_9CLOT Length = 390 Score = 230 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 75/401 (18%), Positives = 145/401 (36%), Gaps = 66/401 (16%) Query: 6 RNEIWYASYSL---PGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEA 62 RN +W S + GK I++ K KR+ + + + + R + +T EE Sbjct: 18 RNGLWRGSITTGRNTEGKLIRKQFYGKTKREVLDKMNDYRDKSSRG-LIAKDEKITLEEW 76 Query: 63 CLRWLEEKADKKSLDSDKSRIEFWLEHF------EGIRLKDISEAKIYSAVSRMHNRKTK 116 WL + + S R + ++ ++LKD++ I + + + Sbjct: 77 YNIWLFQFKANELKASTIERYNVFYRNYIKGCNIGQVKLKDLTAPIIQNYYNSL------ 130 Query: 117 EIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKI- 175 + T +K+ L A+R ++ + Sbjct: 131 --------------------IKNGKTPYTVKMLHKALKSSLSYAKRI-NYIGINCCDNVI 169 Query: 176 -PAVRNK---RVRWLEKEEAKRLIDECPEP-LKSVVKFALATGLRKSNIINLEWQQIDMQ 230 P V NK + + EE K+ ++ + + + AL TG+R ++ L+W I+ Sbjct: 170 PPKVINKDDDKFKVFTLEEQKKFMNVIKDHKYRLMFILALGTGIRIGELVALKWDDINFD 229 Query: 231 RRVAWVNP-------------------EESKSNRA-IGVALNDTACKVLRDQIGKHHKWV 270 VN K+ + V + K L + + ++ Sbjct: 230 ECTLKVNKSISRSYIEIEGKRKFLLEETTPKTRSSIREVGIPSNILKELINHRKEQDEYK 289 Query: 271 FVHTKAAKRADGTSTPAVRKM--RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSG 328 + + + T A+ + ++L + I RFH LRHT+A+ L + G Sbjct: 290 DNYKEIYTDNNYVFTDALGRYILPDTLSKAYLKVLKDNNIPHTRFHSLRHTYATRLFEKG 349 Query: 329 VPLSVLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIF 368 VPL +Q++ G SI++ Y H+ N K++D+F Sbjct: 350 VPLKTVQKLLGHSSIKITADIYTHVIGNEKISAVEKLNDLF 390 >UniRef50_B2TKJ3 Phage integrase family protein n=4 Tax=Clostridium RepID=B2TKJ3_CLOBB Length = 385 Score = 230 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 65/409 (15%), Positives = 142/409 (34%), Gaps = 63/409 (15%) Query: 2 SLFRRNEIWYASYSLP--GGKRIK-ESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 S+ +R WY + + GKR K E G K++A E K +E V + +++ Sbjct: 4 SVRKRGNKWYYYFDVAKSDGKRKKIERAGGNTKKEALEALRKALSEYDNVGTIITESNIS 63 Query: 59 FEEACLRWLEEKA----DKKSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMHNR 113 + W E + S K I+ +LK I+ +++ ++ Sbjct: 64 VSDYFDYWFNEYVLINCKYSTQVSYKRLIKNHLKPSLGIYQLKKITSSRLQELIN----- 118 Query: 114 KTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV- 172 + S ++ + A ++++ P+ Sbjct: 119 ---------------------LKYRNGFSKNYLGNLYGVLSGAFKYAVYPSNFIKENPMT 157 Query: 173 -IKIPAVRNKRV------RWLEKEEAKRLIDECP--EPLKSVVKFALATGLRKSNIINLE 223 +K+P K + + + E+ ++ P + ++ + TGLR + +++L Sbjct: 158 FVKMPKYNTKLINNPDDLKIITLEDYNNILKRFPYGSNMYIPLQISFNTGLRAAEVMSLT 217 Query: 224 WQQIDMQRRVAWVNP------------EESKSNRA-IGVALNDTACKVLRDQIGKHHKWV 270 W ID + + V K++ + + + +T +L+ + Sbjct: 218 WDCIDFENQTLRVEKILYRNEFKKWVFGSPKTHSSYRTIKIGNTLLSLLKKFHKDQKENK 277 Query: 271 FVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACR----RAGIEDFRFHDLRHTWASWLIQ 326 + + D + + S + GI DF+FH LRHT A+ L++ Sbjct: 278 LRYGPFYVKHDYDFVCLKENGELLTTDSLKYLSKVVNYELGI-DFKFHSLRHTHATMLLE 336 Query: 327 SGVPLSVLQEMGGWESIEMVR-RYAHLAPNHLTEHARKIDDIFGDNVPN 374 +G + +Q+ G + Y+H+ + R ++ P+ Sbjct: 337 AGANIKDIQQRLGHSKLATTMDVYSHVTKKMSQDSVRLFEEAIKKLPPS 385 >UniRef50_A1VU89 Phage integrase family protein n=2 Tax=Burkholderiales RepID=A1VU89_POLNA Length = 327 Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats. Identities = 69/371 (18%), Positives = 135/371 (36%), Gaps = 61/371 (16%) Query: 1 MSL-FRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGD--LPDV 57 M+ +R W G E K A++ ++++ R + Sbjct: 1 MATFRKRGNGWQVRVRRLGYP--DEVKTFPIKLDAEQWARSIESDMDRGPFVSRNIAEQT 58 Query: 58 TFEEACLRWLEEKADKKS--LDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKT 115 +F + R+++E K L+ + +++ + Sbjct: 59 SFGDVMRRYMKEITPGKRGCLEETIRLTATLRLKISKFSMVNLTPEVLAEYRDE------ 112 Query: 116 KEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAP--VI 173 K T + LA++ +I+ A R+W++ + P +I Sbjct: 113 ---------------------RLKSCQPSTVVRDLAVLSSIINHARREWRFPIQNPIEMI 151 Query: 174 KIPAVRNKRVRWLEKEEAKRLIDEC------PEPLKSVVKFALATGLRKSNIINLEWQQI 227 + P + R R L + + L+ E ++ +V A+ T +R+ I+ L W+ + Sbjct: 152 RKPTMPPGRDRVLSRTDEVTLLTELLPTGRRNPLMQPIVVIAIETAMRRGEILGLRWEHV 211 Query: 228 DMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPA 287 D+ ++ ++ +K+ ++ V L+ A + LR VF AA A+ Sbjct: 212 DLDQQTVFL--PITKNGKSRYVPLSKRAVETLRTVDRSIDGRVFPIGMAAMEAN------ 263 Query: 288 VRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVR 347 +L A RR + D FHDLRHT S + + L + G S++M++ Sbjct: 264 -----------FLKAVRRGNLGDLHFHDLRHTGTSRMANKLPNVIELAAVTGHTSLQMLK 312 Query: 348 RYAHLAPNHLT 358 RY H + L Sbjct: 313 RYYHPKAHDLA 323 >UniRef50_Q2JGT4 Phage integrase n=4 Tax=Frankia RepID=Q2JGT4_FRASC Length = 431 Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats. Identities = 73/397 (18%), Positives = 155/397 (39%), Gaps = 31/397 (7%) Query: 2 SLFRR--NEIWY--ASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDV 57 S+++R + +W A +P G + + + K +E K +A+ + + Sbjct: 37 SIYQRESDGMWVGAAYVLMPDGTQRRRPVYGKTADIVREKLTKMQAQSDQGI-PAEATGW 95 Query: 58 TFEEACLRWLEEKA----DKKSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMHN 112 T E WL + +++ + + + + RL ++ + + + R+ Sbjct: 96 TMERFLTYWLSDIVTPACKPRTVQGYEVIVRNYLIPAIGKKRLNKLNGVDVRNLLKRVRG 155 Query: 113 RKTKEIWKQKVQAAIRKGK--ELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKA 170 + + +++ + + + S + + ++++ +L AA R+ + + + Sbjct: 156 TCLCCLHGTDRRRPVKQRRCCAVGRCCHQAPSARLVQQVHSVLRNVLGAAVRE-ELVGRN 214 Query: 171 PV--IKIPAVRNKRVRWLEKEEAKRLIDECP-EPLKSVVKFALATGLRKSNIINLEWQQI 227 K+ K R L ++A L+ + L ++ AL GLR+ I+ L W+ I Sbjct: 215 VAKLAKVSGPTYKVHRGLSADQASHLLKAAAHDRLYALYVLALYLGLRRGEILGLRWEDI 274 Query: 228 DMQRRVA-----------WVNPEESKSN-RAIGVALNDTACKVLRDQIGKHHKWVFVHTK 275 D + + K+ + L KVLR+ + Sbjct: 275 DFEDETLAVRHSLQRVGGHLRVVAPKTRTSERTLPLLPLIAKVLREHQARQDAERETADV 334 Query: 276 AAKRADGTSTPAVRKM--RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSV 333 + T A+ + + SWL C G+E RFHD+RHT + L+ +GVP V Sbjct: 335 NWRETGFVFTTAIGTPIEPDNLRRSWLPLCGVLGLEGVRFHDIRHTCVTLLLNAGVPPHV 394 Query: 334 LQEMGGWESIEMVR-RYAHLAPNHLTEHARKIDDIFG 369 ++E+ G +I++ YAH + + +K+ D Sbjct: 395 VREIAGHSAIDVTMEIYAHASLDDKRAALQKLVDELA 431 >UniRef50_C8WVH7 Integrase family protein n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WVH7_ALIAD Length = 391 Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats. Identities = 72/406 (17%), Positives = 137/406 (33%), Gaps = 57/406 (14%) Query: 6 RNEIWYASYSLPG---GKRIKESL-GTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEE 61 + + + + G+ + + G K +R A+ + L + T E Sbjct: 16 KKYGYTITITPADPQTGRYPQVTRKGFKSERAAKSAMMEHLRSL-EDTPVVHAKSFTLHE 74 Query: 62 ACLRWLEEKA---DKKSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKE 117 RW +K+ + + ++ + L + + I I + ++ NR Sbjct: 75 WASRWFADKSSSLRPWTRRTYHHVLQAYILPELGKMPISKIEARHIQALYRKLSNR---- 130 Query: 118 IWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKI 175 + T + ++K L AA + +L+K+P ++ Sbjct: 131 -----------------------LKPVTVHRIHRVLKTCLLAAVKA-GYLDKSPFLNVEP 166 Query: 176 PAVRNKRVRWLEKEEAKRLIDECPEPL---KSVVKFALATGLRKSNIINLEWQQIDMQRR 232 P + L +A RL+ E A+ TG+R I L+W+ ID+ Sbjct: 167 PEHKTPPKPVLSVNDAFRLLAWLREHRPTSYMAAFLAIHTGMRMGEIAGLQWRDIDLDTG 226 Query: 233 VAWVNPEE------------SKS-NRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKR 279 V + K+ + + LR + + + + Sbjct: 227 VIQLERTRYRPKGGQDFLGPPKTFGSRRRIVVTREVVDELRRWKQSQQE-IERESWTPES 285 Query: 280 ADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGG 339 + + +A + G+ FH LRHT A+WL++SGV L ++ E G Sbjct: 286 FVVRLPNSAPPSPASFNNAIQNARKELGLPPVSFHGLRHTHATWLLESGVDLKIVSERLG 345 Query: 340 WESIEMV-RRYAHLAPNHLTEHARKIDDIFGDNVPNMSHSEIMEDI 384 SI + YAH+ E K+ + N S S+ ED+ Sbjct: 346 HSSITITADIYAHVTDALQREAIEKLQRMMRSRRTNNSGSDDEEDL 391 >UniRef50_B8I354 Integrase family protein n=1 Tax=Clostridium cellulolyticum H10 RepID=B8I354_CLOCE Length = 413 Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats. Identities = 59/397 (14%), Positives = 137/397 (34%), Gaps = 67/397 (16%) Query: 30 DKRQAQELHDK----RKAELWRVEKLGDLPDVTFEEACLRWLEEKADK---KSLDSDKSR 82 ++Q ++ K + E+ + +T E WL++K + K+ Sbjct: 40 TEKQREKELQKQVVLFEEEVKSGSYY-EPTKMTMSEFIELWLDKKKNNIESKTHQGYSGL 98 Query: 83 IE-FWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPV 141 ++ L+ ++ D+ + + + +E + Sbjct: 99 LKGRVLKVMGDTKIIDLKPLHLINFYENLQELGIRE-----------------DGREGKL 141 Query: 142 STQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKIPAVRNKRVRWLEKEEAKRLIDEC- 198 ST + + + A+ R W +++ P ++ P V K + L++++ +LI Sbjct: 142 STNSILHYHRALNAMFGDGVR-WGLIKENPCSKVRPPKVVKKEMSCLDEDQIPQLISALC 200 Query: 199 --PEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNP------------EESKSN 244 P + + + L TGLR+ + L+W ++++ V + K+ Sbjct: 201 NEPIDISTFITLDLVTGLRRGELCGLQWDNVNLKDNTIVVEQAVSYTPETGTIIKTPKTK 260 Query: 245 RA-IGVALNDTACKVLR---------------DQIGKHHKWVFVHTKAAKRADGTSTP-- 286 + + + T +L + V + + + + T Sbjct: 261 SSIRKITIPKTTSDLLSIYRKWWLEQKIKVGDQWQKSAREEVEKNGQTWEDPEYLFTTWD 320 Query: 287 AVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMV 346 ++ +R + D R HDLRHT A+ LI +G+ + + G E+ + Sbjct: 321 GYVMHPDTLTKTFKKFIKRNNLPDIRLHDLRHTAATMLIHAGLNIRAVAARMGHENPNVT 380 Query: 347 R-RYAHLAPNHLTEHARKIDDIFGDNVPNMSHSEIME 382 Y+H + + A + G+ + +E +E Sbjct: 381 LAIYSHALLSADKQAAD----VMGNLIKKKPQNEKVE 413 >UniRef50_D0DGR8 Integrase n=1 Tax=Lactobacillus crispatus MV-3A-US RepID=D0DGR8_9LACO Length = 388 Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 80/424 (18%), Positives = 143/424 (33%), Gaps = 78/424 (18%) Query: 2 SLFRRNEIWYASYSLPGGK------------RIKESLGTKDKRQAQELHDKRKAELWRVE 49 S+ +R + WY +S + + K G K K +AQ+ K +A Sbjct: 3 SIRKRGKTWYVRFSKRETQWDPEKQKNVSILKQKSKGGFKTKSEAQQYGIKMEAASIDGV 62 Query: 50 KLGDLPDVTFEEACLRWLEEKA----DKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYS 105 + P F + W K + + + ++F ++KDIS AK S Sbjct: 63 DVVKNPV--FADYFEHWYLTFKFPIIRKSTQKRYITNYHYLEKYFGSTKIKDISRAKYQS 120 Query: 106 AVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWK 165 ++ + K + T K M+KA A D Sbjct: 121 FLNWLG---------------------------KNHAPATVRKTNIMVKACAGNAIEDGL 153 Query: 166 WLEK--APVIKIPAVRNKR-VRWLEKEEAKRL----IDECPEPL--KSVVKFALATGLRK 216 ++ N R + +L + E +L + K +V L TG R Sbjct: 154 IVKNFTNRTTITGNQDNVRAIEYLNEGEMNKLVQLCLTNLTPRYTSKYLVLAGLFTGARL 213 Query: 217 SNIINLEWQQIDMQRRVAWVNPEE---------SKSNRA-IGVALNDTACKVLRDQIGKH 266 + L+W ID + ++ +N +K+ + + +N L+ + Sbjct: 214 GELTALKWTDIDFKNKIIDINKTWNPNLKILGPTKTESSVRKIKVNSFLLDKLKQLKINN 273 Query: 267 HKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGI--EDFRFHDLRHTWASWL 324 +++F + + A + G+ DF FH LRHT S+L Sbjct: 274 SEFIFAIPRTG----------LPPSSSAVNQFLRKAIKEIGLNKPDFHFHSLRHTHVSYL 323 Query: 325 IQSGVPLSVLQEMGGWESIEMVR-RYAHLAPNHLTEHARKIDDIFGDNVPN-MSHSEIME 382 I G+ ++ + + G +I + YAHL + + KI + + H E Sbjct: 324 ISQGIDIAAISKRLGHANIAITLSIYAHLLDEYKDQQDAKIINSLNQVCATFVQHREKFY 383 Query: 383 DIKK 386 DI K Sbjct: 384 DIAK 387 >UniRef50_B1R824 Prophage LambdaBa04, site-specific recombinase, phage integrase family n=4 Tax=Clostridium perfringens RepID=B1R824_CLOPE Length = 368 Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 63/400 (15%), Positives = 138/400 (34%), Gaps = 68/400 (17%) Query: 1 MSLFR--RNEIWYASYSLPG----GKRIK-ESLGTKDKRQAQELHDKRKAELWRVEKLGD 53 M+ + W SL KRI+ + G K K++A+ ++ +++ L Sbjct: 1 MASYNQISKGNWQVVISLGNDPVTKKRIRVKKQGFKTKKEAERFVNEYSSKVDNGFLLPK 60 Query: 54 LPDVTFEEACLRWLEEKA----DKKSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVS 108 D+ ++ L W + ++ SRIE + + +L ++ I + + Sbjct: 61 SKDIYLKDFILDWFYNHKILSIGINTKNNYLSRIETYIVPLLGNYKLTELDTLTIQNFYN 120 Query: 109 RMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLE 168 + + T P+ + K + + L+ A++ K + Sbjct: 121 YLLTKDT------------------------PLKPSSAKKVIEALSNCLKYAKK-LKLIT 155 Query: 169 KAPV-IKIPAVRNKRVRWLEKEEAKRLIDECPE-PLKSVVKFALATGLRKSNIINLEWQQ 226 P I+ + ++ + K+E ++E + L V TG+R + L+W Sbjct: 156 YLPTDIEKVNIEKPKIEFWSKQELDFFLNEIKDTYLYFPVLICALTGVRVGELCGLKWCD 215 Query: 227 IDMQRRVAWV-----------------NPEESKSNRAIGVALNDTACKVLRDQIGKHHKW 269 +D +R + N + +KS +++ + + + + Sbjct: 216 VDFKRGYLNITRQVISDKSTNTLVCTENLKTTKS--DRTISIPKVLLREFEKNLKAPNNF 273 Query: 270 VFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGV 329 + + + R + +D R + H LRHT A+ LI +G Sbjct: 274 IVLSRENE-------MCNPRNISMDFTKKVNKYKDR--LPQISIHGLRHTHATLLILNGE 324 Query: 330 PLSVLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIF 368 + ++ + G I Y H+ A +D++F Sbjct: 325 NIKIVSDRLGHNDITTTLNTYTHIMEEMKDNTAELLDNLF 364 >UniRef50_C1B977 Putative integrase n=2 Tax=Nocardiaceae RepID=C1B977_RHOOB Length = 368 Score = 228 bits (582), Expect = 3e-58, Method: Composition-based stats. Identities = 78/385 (20%), Positives = 127/385 (32%), Gaps = 62/385 (16%) Query: 7 NEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDL-PDVTFEEACLR 65 + W Y P K + G KRQAQ+ + E R E + +T E Sbjct: 12 GKRWEVRYRTPERKSTRR-RGFTSKRQAQDFAATVEVEKMRGEYVPPKLGHITMGEVGPA 70 Query: 66 WLEEKADKKSLDSDKSRIEFW----LEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQ 121 WLE K + +S W + +RL D+ + ++ ++ K + Sbjct: 71 WLERKESDLKPSAYRSLETSWRVHVKPRWGTVRLSDVDLDAVERWIADLNRTKGATV--- 127 Query: 122 KVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKI---PAV 178 + ++ IL +A + K L + P + P Sbjct: 128 ------------------------VIRAYGVLAGILDSAVK-GKRLARNPARGVENLPRK 162 Query: 179 RNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWV-- 236 + K +L +E L D E +++V GLR I L + +D+ R+ A V Sbjct: 163 QRKPRVYLTHDEVAALADSAGEK-RALVLVLAYCGLRWGEAIGLRVRHLDLLRKRATVVE 221 Query: 237 ---------NPEESKSNRAIGVALNDTACKVLRDQI--GKHHKWVFVHTKAAKRADGTST 285 + KS+++ V + + L Q VF S Sbjct: 222 NAVQVNMEMHVGTPKSHKSRSVPIPGFVVEELARQCEGKGRDDLVFPGRDGDYLKRSVSF 281 Query: 286 PAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEM 345 + A ++G+ HDLRHT AS I +G + LQ M G S M Sbjct: 282 TGW----------FTKAVEKSGVPRLTPHDLRHTCASLSIAAGANVKSLQRMLGHASAAM 331 Query: 346 V-RRYAHLAPNHLTEHARKIDDIFG 369 Y+ L + L +D Sbjct: 332 TLDTYSDLFEDDLDAVGDALDQAVS 356 >UniRef50_C3EB65 DNA integration/recombination/invertion protein n=1 Tax=Bacillus thuringiensis serovar pakistani str. T13001 RepID=C3EB65_BACTU Length = 367 Score = 228 bits (581), Expect = 3e-58, Method: Composition-based stats. Identities = 62/380 (16%), Positives = 143/380 (37%), Gaps = 54/380 (14%) Query: 21 RIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRWLEEKAD----KKSL 76 R + K+KRQA++ AE+ E + + F++ W+++ A K +L Sbjct: 15 RRSKMATAKNKRQAEKELALFIAEIEVGEYI-KPQKMLFKDFFAEWIQKYAKTNLQKTTL 73 Query: 77 DSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPV 135 + ++ + +++DI + + Sbjct: 74 FNYIHILDTHIIPVLGNKKVEDIKTIHLVTLF-------------------------HGK 108 Query: 136 YEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKR--VRWLEKEEAKR 193 K ++T T +K + + A +W +++K P+ + ++NKR ++ +++E + Sbjct: 109 LPAKGLATTTINSIHTRVKMLFKKAC-EWGFIKKNPMDGVSKLKNKRQELQPYDQKEIVK 167 Query: 194 LIDECPEP---LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNP-----------E 239 ++ + K + + A+ TG+R+ ++ LEW ID Q + + + Sbjct: 168 ILALTEQEKDMNKMLFQLAIVTGMRRGELLGLEWGHIDFQNDMVHIQQTIVRAGKEILLK 227 Query: 240 ESKSNRA-IGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTS----TPAVRKMRID 294 E K++++ +++ T L+ + + + Sbjct: 228 EPKTSKSKRIISIPPTFTTKLKQYKKYCAEKRIACGDLWEGEEHLFLFSTWNGRPLTPEK 287 Query: 295 SKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVR-RYAHLA 353 + T W ++ G+ + H LR T A++L+ G L V+ E G I+ YAH+ Sbjct: 288 ASTRWQYFTQKHGLRHIKLHGLRSTHATYLLTQGENLKVISERLGHSDIQTTMNIYAHVL 347 Query: 354 PNHLTEHARKIDDIFGDNVP 373 + + + + +P Sbjct: 348 EEVNKKASNHFETLLTHTMP 367 >UniRef50_A9AEX0 Tyrosine recombinase n=1 Tax=Burkholderia multivorans ATCC 17616 RepID=A9AEX0_BURM1 Length = 328 Score = 227 bits (580), Expect = 4e-58, Method: Composition-based stats. Identities = 80/374 (21%), Positives = 141/374 (37%), Gaps = 64/374 (17%) Query: 1 MSLF-RRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDL--PDV 57 M+ F +RN W + G S K + Q + + + DV Sbjct: 1 MATFSQRNGRWQVKINRKGFPTQYRS--FATKAEGQVWARSVETAMDDGTWVDPAGTTDV 58 Query: 58 TFEEACLRWLEE-KADKKSLDSDKSRIEFWLEH-FEGIRLKDISEAKIYSAVSRMHNRKT 115 TF + R+ E K+S S++ RI L H +++++ + + + Sbjct: 59 TFGKLLERYRESITPTKRSRRSEEYRIGKMLRHKIAEYSMRNLTASLVADYRDQ------ 112 Query: 116 KEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--I 173 K + + LA I A++ A+R+W P + Sbjct: 113 ---------------------RLKVATNSCVCRELATISAVITHAQREWGLSITNPAKLV 151 Query: 174 KIPAVRNKRVRWLEKEEAKRLIDEC--------PEPLKSVVKFALATGLRKSNIINLEWQ 225 K P + R R L+ E RL+ E L + K AL T +R+ +++LEW+ Sbjct: 152 KKPRLPPGRNRILKPAELDRLLHELHAERHELRSRWLLPLAKLALETAMRQGELLSLEWR 211 Query: 226 QIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTST 285 +D +R A++ +K+ + V L+ A +L + + V Sbjct: 212 HVDFDQRTAYL--PMTKNGKDRHVPLSSAAIAILESL-ERIDERVIP------------- 255 Query: 286 PAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEM 345 + +W AC+RA IE+F FHDLRH + L + + L + G +++M Sbjct: 256 ----ITQNVVLCAWPRACKRAAIENFHFHDLRHMATTNLAKKLPNVIELASVTGHSNVQM 311 Query: 346 VRRYAHLAPNHLTE 359 + RY H + L Sbjct: 312 LSRYYHTSAGELAR 325 >UniRef50_Q0FPA2 Probable site-specific integrase/recombinase n=2 Tax=Rhodobacterales RepID=Q0FPA2_9RHOB Length = 341 Score = 227 bits (580), Expect = 5e-58, Method: Composition-based stats. Identities = 79/366 (21%), Positives = 137/366 (37%), Gaps = 52/366 (14%) Query: 2 SLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWR---VEKLGDLPDVT 58 ++ RN W+A + G +S KR A+ + +AEL + L VT Sbjct: 3 AIRNRNGKWHAQVRIKGHASQTKS--FTTKRDAERWAKQTEAELQASALRIDIRVLDRVT 60 Query: 59 FEEACLRWLEEK-ADKKSLDSDKSRIEFWLE-HFEGIRLKDISEAKIYSAVSRMHNRKTK 116 + R+ E A K+ S+ RI+ +L + L ++ Sbjct: 61 VRDLLERYRREVTATKRGAASESKRIDGFLRQTWVDRTLSKVTPQVFSRYRDE------- 113 Query: 117 EIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKW-LEKAPV--I 173 + V T + L ++++I A +W L+ P+ + Sbjct: 114 --------------------RLRTVRPGTVIRDLGLLRSIFEVARLEWDVPLQNNPLANV 153 Query: 174 KIPAVRNKRVRWLEKEEAKRLIDEC----PEPLKSVVKFALATGLRKSNIINLEWQQIDM 229 + P + R R L E L+ C + L++ + A+ TG+R+ I+++ W + M Sbjct: 154 RKPKAPDPRERRLRPGELDLLLTACQSYRNDWLRAGIVLAIETGMRRGEILSIRWCDVSM 213 Query: 230 QRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVR 289 + E+K+ A + L A VLRD + V ++ R S A R Sbjct: 214 DTSTLTIR--ETKNGHARRIPLTAVAVDVLRDMLE-------VCDDSSVRIFPVSANAFR 264 Query: 290 KMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRY 349 + K ++ IE RFHDLRH S + G+ + + + G M+ RY Sbjct: 265 QCWQRCKGKVAEDYKQ--IESLRFHDLRHEAVSRFFEMGLSVPEVALISGHRDPRMLFRY 322 Query: 350 AHLAPN 355 HL Sbjct: 323 THLRAE 328 >UniRef50_C4Z3W8 Integrase/recombinase XerC n=7 Tax=Clostridiales RepID=C4Z3W8_EUBE2 Length = 400 Score = 227 bits (580), Expect = 5e-58, Method: Composition-based stats. Identities = 62/393 (15%), Positives = 130/393 (33%), Gaps = 65/393 (16%) Query: 1 MSLFR--RNEIWYASYS---LPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLP 55 M ++ + W+ + G + + G KR+A + K + + Sbjct: 3 MPAYKDSKTGTWFVKFYCKDWTGENKQIKKRGFATKREALDYERNYK------IRQENNL 56 Query: 56 DVTFEEACLRWLEE---KADKKSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMH 111 D+TF E + E+ + + + ++ L +F +++ +I+ + + M Sbjct: 57 DMTFGEFWKLYTEDVKNYVKLNTWLTKEHIVDTKILPYFRNLKMNEITPGDVRKWQNEMV 116 Query: 112 NRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAP 171 + + K S K ++ AI A R + + P Sbjct: 117 AFRYEN--------------------GKCYSQTYKKTMHNILSAIFNHACRFYNL-KSNP 155 Query: 172 VIK---IPAVRNKRVRWLEKEEAKRLIDEC--PEPLKSVVKFALATGLRKSNIINLEWQQ 226 + + K + + EE K+ + + TG+R ++ L + Sbjct: 156 ARQAGNMGREEKKEMLFWTTEEYKKFSEAVIDKPVSFYAFEMLYWTGMRLGELLALTMED 215 Query: 227 IDMQRRVAWVNP-----------EESKS-NRAIGVALNDTACKVLRDQIGKHHKWVFVHT 274 D ++ +N K+ + L + +++ F Sbjct: 216 FDFEKNTVRINKSYQRLQGQDVITTPKTPKSNRTIKLPKFLAEEMQEY--------FAML 267 Query: 275 KAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVL 334 D + C+ +G++ R HDLRH+ S LI G + Sbjct: 268 YDQTPTDRIFL----VTKSFLHHEMERGCKLSGVKKIRIHDLRHSHISHLIDLGFSAVAI 323 Query: 335 QEMGGWESIEMVRRYAHLAPNHLTEHARKIDDI 367 + G ESI++ RY+HL P+ A ++D + Sbjct: 324 ADRVGHESIDITYRYSHLFPSKQVAMADRLDAV 356 >UniRef50_C4FP65 Putative uncharacterized protein n=1 Tax=Veillonella dispar ATCC 17748 RepID=C4FP65_9FIRM Length = 357 Score = 227 bits (580), Expect = 5e-58, Method: Composition-based stats. Identities = 81/391 (20%), Positives = 150/391 (38%), Gaps = 57/391 (14%) Query: 1 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWR-VEKLGDLPDVTF 59 M+ +R + Y L GKR + K+ A D L + + + Sbjct: 1 MA-KKRADGRYQVSKLINGKR--KYFYGTTKKAAIAERDAYVESLAQCANYDNTITTERW 57 Query: 60 EEACLRWLEEKADKKSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEI 118 E +R + + +L S + I+ + + IRL ++S + + + M + Sbjct: 58 CEYWIRLKTDTVSQNTLSSYQYIIKTYIVPFIGSIRLVELSALNVRALMDSMSH------ 111 Query: 119 WKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAV 178 +S +T + L +++AIL+ A D + + K + Sbjct: 112 ----------------------LSARTISYTLTVLRAILKQAVMD-EIISKNVATLVKKP 148 Query: 179 RNKRVR---WLEKEEAKRLIDECPE-PLKSVVKFALATGLRKSNIINLEWQQIDMQRRVA 234 + +R R L KEE + +++ + ++ K A TGLR+S I+ L W ++++++ Sbjct: 149 KQERKREMVTLSKEEVETFLEQIDDVEWHALFKLAFTTGLRRSEILGLTWDDVNLKQKTL 208 Query: 235 WVNP------------EESKSNRAI-GVALNDTACKVLRDQIGKHHKWVFVHTKAAKRAD 281 VN + +K++ + ++L+D L K R + Sbjct: 209 TVNQTVLRIDEVTTISKTTKNSSSRRSISLDDKTIAELLKLRTCVDKRRLKAPNW--RNN 266 Query: 282 GTSTPAVRKMRIDSKTSWLSACRRA---GIEDFRFHDLRHTWASWLIQSGVPLSVLQEMG 338 P D L + A G DF HD RHT A+ L+++GV V+Q Sbjct: 267 NLVFPGKFGNPRDPAKVSLKCKKFATAIGRPDFTMHDTRHTHATLLLEAGVNFKVVQMRL 326 Query: 339 GWESIEMVR-RYAHLAPNHLTEHARKIDDIF 368 G S + Y+H+ P + KI +IF Sbjct: 327 GHSSYQQTMDTYSHVTPIMEADVVEKISNIF 357 >UniRef50_B9KV34 Phage integrase n=4 Tax=Rhodobacter RepID=B9KV34_RHOSK Length = 434 Score = 227 bits (580), Expect = 5e-58, Method: Composition-based stats. Identities = 60/348 (17%), Positives = 132/348 (37%), Gaps = 33/348 (9%) Query: 48 VEKLGDLPDVTFEEACLRWLEEKADK---KSLDSDKSRIEFWL-EHFEGIRLKDISEAKI 103 E+ F++ R+L+E + S KS + + ++ + +I++ + Sbjct: 99 GERSRRREAPRFQDLIDRYLKEHVPRLAPVSAADQKSMLAKLVAPYWGRKLVTEITKPDV 158 Query: 104 YSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERD 163 ++++ + + + + + + +++ + A + Sbjct: 159 EKLLAQIAEGRARPSKA-------KPNNRARKLQGPKPTPVRANRVGEVLRKMFNLAI-E 210 Query: 164 WKWLEKAPVIKI-PAVRNKRVRWLEKEEAKRL---IDECPEPLKS-VVKFALATGLRKSN 218 W W P + N R R+L K+E RL +D + + +++ + TG R Sbjct: 211 WGWRTDNPANGFFRRIENPRERFLSKDEIDRLAKALDAAEDQRAAGIIRICMLTGARVGE 270 Query: 219 IINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQI---GKHHKWVFVHTK 275 + ++Q D++ + +K R V +++ ++R + K W+F Sbjct: 271 VRQSRFEQFDLEHCLWSKPAATTKQRRVHRVPISEDVSAIVRQRRLLVPKGSPWLFPGDV 330 Query: 276 AAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQ 335 + + + W+ + A IE R HDLRHT+AS L+ G L ++ Sbjct: 331 PGQPVK------------EIRRFWIRIQKEAQIEGVRIHDLRHTFASLLVSGGASLEMIG 378 Query: 336 EMGGWESIEMVRRYAHLAPNHLTEHARKIDDIFGDNVPNMSHSEIMED 383 ++ G ++ +RYAHL L + +F P + H + Sbjct: 379 KLLGHTQMQTTQRYAHLMEGPLRAGVDAVASVFRPK-PTLVHDRDGQG 425 >UniRef50_B0ABY5 Putative uncharacterized protein n=3 Tax=Clostridium RepID=B0ABY5_9CLOT Length = 370 Score = 227 bits (579), Expect = 5e-58, Method: Composition-based stats. Identities = 67/397 (16%), Positives = 148/397 (37%), Gaps = 60/397 (15%) Query: 1 MS---LFRRNEIW--YASYSLPG-GKRIKESLG-TKDKRQAQELHDKRKAELWRVEKLGD 53 MS + +R++ + Y Y+ GK+ ++++G KR A + ++ K E++ + + Sbjct: 1 MSYAFIRKRSKNYIVYLEYTDETTGKKKQKNMGSYPLKRDASKRLNELKEEIYNDDLVAP 60 Query: 54 LPDVTFEEACLRWLEEKADKKSLDSDKSRIE----FWLEHFEGIRLKDISEAKIYSAVSR 109 D+ E+ + +LE+ S+ + I + I+L D+ I + V Sbjct: 61 N-DMKLEKYLMDFLEKYKPNLSITTYNCYIRICKKYINPMLGNIKLNDLKPIHIQNYVDD 119 Query: 110 MHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAER----DWK 165 + +S QT H+ ++ L+ A + + Sbjct: 120 LVGI---------------------------LSPQTIKIHINILNLALKRAYKLKLVKYD 152 Query: 166 WLEKAPVIKIPAVRNKRVRWLEKEEAKRLIDECPE-PLKSVVKFALATGLRKSNIINLEW 224 ++ I++P + + ++++ +L++ L+ + A+ GLR S ++ L W Sbjct: 153 IVD---CIEVPKNKKFKSEVYDQKDIAKLLETIKNTDLELPINLAIGLGLRISEVLGLSW 209 Query: 225 QQIDMQRRVAWVNP-----------EESKSNRA-IGVALNDTACKVLRDQIGKHHKWVFV 272 ID + +E K++ + ++ +L+D K+ + Sbjct: 210 SDIDFTENTITIEKITARDSGKVILKEPKTDTSKRTISAPKEVMAMLKDYKRKYLQDKLQ 269 Query: 273 HTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLS 332 + ++ ++ RFHDLRH+ + LI + VP+ Sbjct: 270 GKIKDCNLLFLDKNENPIAEDVLSKKFSRFLKKHNLKHIRFHDLRHSHVTLLINAKVPIK 329 Query: 333 VLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIF 368 V+ E G ++ Y+H E + KI + Sbjct: 330 VISERVGHSNVNTTLNIYSHTLKEMDQEASEKISESI 366 >UniRef50_C0GUW3 Integrase family protein n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GUW3_9DELT Length = 414 Score = 227 bits (579), Expect = 6e-58, Method: Composition-based stats. Identities = 72/359 (20%), Positives = 139/359 (38%), Gaps = 43/359 (11%) Query: 19 GKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRWL---EEKADKKS 75 K + G + +E+ + R+AE +++K ++ TF ++ + + KS Sbjct: 65 KKAQRTGEGALTLAERREMENVRRAEDIKLKKEQEIASTTFNIIWEKYFLNSQHEKAYKS 124 Query: 76 LDSDKSRIEFWL-EHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELP 134 D+++ + W+ + ++ + M Sbjct: 125 WDTERHLYKKWIQPFIGEVFFTKVTAFHLEKIKKEM------------------------ 160 Query: 135 VYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKIPAVRNKRVRWLEKEEAK 192 +S ++ L++++ + A + PV +K+P N+R+R+L EA+ Sbjct: 161 --RDASLSPRSIGYALSVVRQVFCYASDHGIFEGVDPVSLVKMPHYDNRRIRFLTHSEAE 218 Query: 193 RLIDEC---PEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGV 249 L+D + + AL G R I +L WQ ID + + V ++K+ + Sbjct: 219 ILLDVLCFSSQNTHDIALIALHCGPRAGEIFSLTWQDIDFSQGL--VTFRDTKNKYVRHI 276 Query: 250 ALNDTACKVLRDQ-IGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGI 308 + K+L + + VF +R + + ++ Sbjct: 277 PITKRVRKMLERRSDDRSSALVFPDRNGGRRKKVSKAFERTIKELGWNKGIDDPRQK--- 333 Query: 309 EDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDI 367 FH LRHT ASWL+ +GVPL ++E G + I RYAHLAP+ L + ++ I Sbjct: 334 --VVFHTLRHTCASWLVMAGVPLYTVKEYLGHKQISQTERYAHLAPDSLKQATEALNKI 390 >UniRef50_UPI0001BCC5A1 phage integrase n=1 Tax=Aeromicrobium marinum DSM 15272 RepID=UPI0001BCC5A1 Length = 416 Score = 227 bits (579), Expect = 6e-58, Method: Composition-based stats. Identities = 70/388 (18%), Positives = 135/388 (34%), Gaps = 58/388 (14%) Query: 2 SLFRRN-EIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLG-DLPDVTF 59 S RR W Y G+ + + K +A+ D+++ ++ R E + ++ +T Sbjct: 6 SATRRGPGRWLGRYRDKAGR--ERTKTFPTKGEARTWADEQERKVRRGEWVDPEMSRITV 63 Query: 60 EEACLRWLEE-KADKKSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKE 117 E WL K+++S +S + L + +RL+ ++ A + + V+ M + Sbjct: 64 SEWAETWLATLVVKPKTMESYESLLRCHVLPRWGAVRLESVALADVKAWVAGMRQQ---- 119 Query: 118 IWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKA--PVIK- 174 +P+S + ++ +L A D + + P Sbjct: 120 -------------------NGRPLSASRTKQAYQVLTMMLDLAVEDGRLARNSAKPASGR 160 Query: 175 ----IPAVRNKR-VRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDM 229 +P V+ R ++L + + L + + ++ TGLR L +D+ Sbjct: 161 SRSMVPPVQRDRAKKYLTPRQLEALAGAAGD-GRVLILTLGYTGLRWGEASALRVSDVDL 219 Query: 230 QRRVAWVN-----------PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAK 278 R V +KS+ V + + L I Sbjct: 220 LGRRIHVRRSISEVRGSLVFGTTKSHATRTVPITKSLAVELEALIDGRGP--------DD 271 Query: 279 RADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMG 338 +R + + A RAG+ H LRHT AS + +G + +Q+M Sbjct: 272 PLFAAPGGGWLHLRNFRRRDFDPAVARAGLPHITPHGLRHTAASIAVSAGANVKAVQKML 331 Query: 339 GWESIEMV-RRYAHLAPNHLTEHARKID 365 G S M YA L + A +++ Sbjct: 332 GHASAAMTLDVYADLFDEDMDALAERLE 359 >UniRef50_Q1GLB2 Phage integrase n=12 Tax=Rhodobacterales RepID=Q1GLB2_SILST Length = 411 Score = 227 bits (579), Expect = 6e-58, Method: Composition-based stats. Identities = 79/388 (20%), Positives = 141/388 (36%), Gaps = 64/388 (16%) Query: 8 EIWYASYSLPGGKRIKESLGTKDK---RQAQELHDKRKAELWRVEKLGD-----LPDVTF 59 + + A Y GG+ + S+G K +A++L + ++ + E + T Sbjct: 58 KTYQAQYR-KGGRTRRVSVGRHGKITVDEARKLAKEIMGQVAKGENPAEEISQHRKAPTV 116 Query: 60 EEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIW 119 C R+ E A ++ S + ++ F V + + K ++ Sbjct: 117 AALCERFFEAHAKERCKPSTQKEYRRAIDLF---------------IVPALGSFKVVDVE 161 Query: 120 KQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEK--APVIKIPA 177 ++ + K ++ P + L ++ + A W P +P Sbjct: 162 RRDIAELHHKFRDKPHQ---------ANRTLGVLSKMFNLA-EIWGLRPDGSNPCRHVPK 211 Query: 178 VRN-KRVRWLEKEEAKRLIDECPE---------PLKSVVKFALATGLRKSNIINLEWQQI 227 R KR R+L + E +RL E + + + + TG R I L+W I Sbjct: 212 YREVKRERFLSQSELQRLGQVLTEVEREGSETPHMVAAFRLLILTGCRLGEIQTLKWGYI 271 Query: 228 DMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQ-IGKHHKWVFVHTKAAKRADGTSTP 286 +SK+ A + L A VL H +V + A Sbjct: 272 TANGMEL----PDSKTG-ARRIPLPQPARDVLARLPRTPGHPYVIEGKLPGQYA------ 320 Query: 287 AVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMV 346 D + W RAG+ R HDLRHT+AS + +G+P+ ++ + G I+ Sbjct: 321 ------TDLQHPWRRIRDRAGLCGVRIHDLRHTYASNAVSAGMPIQMVGRLLGHTQIQTT 374 Query: 347 RRYAHLAPNHLTEHARKIDDIFGDNVPN 374 RYAHLA + + + A + G V + Sbjct: 375 MRYAHLADDPVRQAAEENAARLGSMVGD 402 >UniRef50_B6FZV4 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FZV4_9CLOT Length = 377 Score = 227 bits (579), Expect = 7e-58, Method: Composition-based stats. Identities = 68/401 (16%), Positives = 127/401 (31%), Gaps = 58/401 (14%) Query: 2 SLFRRNEIWYASYSLP--GGKRIK-ESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 SL ++ + WY S LP GKR + E G K K++AQE +AE+ + + +T Sbjct: 3 SLRKKGDRWYFSVELPQENGKRKRVERRGGKTKKEAQEKMKLFEAEVLKNGYKKEC-KMT 61 Query: 59 FEEACLRWLEEKADKKSLDSD-----KSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNR 113 F+E W E +S + + ++ DI + +++ Sbjct: 62 FDELYNIWFNEYVLNNCKESTTNNYARYYKKHIKPILGNYKVSDIKARVLSDFFNKLKEE 121 Query: 114 KTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVI 173 + +I + L A + +E Sbjct: 122 DKCH--------------------------SSANIIRVVISSCLDYAIFPLEIIENNSCK 155 Query: 174 KIPAVRNKRVRWLEK----EEAKRLID--ECPEPLKSVVKFALATGLRKSNIINLEWQQI 227 I + K+ + + ++ + ++D ++ L TGLR + L+W+ I Sbjct: 156 FIKFPKFKKTKDKKDIIDMKDFETILDIGSSKHNFNNMCLLLLHTGLRIGEALGLQWEDI 215 Query: 228 DMQRRVAWVNPE------------ESKSNRA-IGVALNDTACKVLRDQIGKHHKWVFVHT 274 D ++ V K+ + + NDT KV ++ ++ Sbjct: 216 DFDNKIIHVRHTLIAPNVRECKLSTPKTKTSIRDIYFNDTVEKVFKNIKKSQNENRLKFG 275 Query: 275 KAAKRADGTSTPAVRKM--RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLS 332 + T R+ I +F H RHT A+ L+Q+G + Sbjct: 276 VLYNCNNMVFTHEDGSFLDHHHFTNMVAKINRKTNI-NFSMHTFRHTHATMLLQAGANMK 334 Query: 333 VLQEMGGWESIEMVR-RYAHLAPNHLTEHARKIDDIFGDNV 372 +Q G I Y + K +D Sbjct: 335 DVQARLGHADISTTMNIYVQDTEESKKKALDKFNDYIEKTS 375 >UniRef50_C8WHA4 Integrase family protein n=3 Tax=Bacteria RepID=C8WHA4_EGGLE Length = 357 Score = 226 bits (578), Expect = 7e-58, Method: Composition-based stats. Identities = 76/393 (19%), Positives = 123/393 (31%), Gaps = 67/393 (17%) Query: 1 MSLFRRNEI--WYAS--YSLPGGKRIKE-SLGTKDKRQAQELHDKRKAELWRVEKLGDLP 55 M + + WY YS G R + G K A A Sbjct: 1 MPAYMNGKTGSWYVQCYYSDIDGNRKHKVKRGFATKGDALAWEADFLASADGSM------ 54 Query: 56 DVTFEEACLRWLEEKADK---KSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMH 111 + FE R+ E+ + + + + I + F R+ DI+ + +RM Sbjct: 55 SMPFEAFVKRYSEDVRPRLKLNTWLTKEHIIRTKIVPFFGPKRMCDITPKDVVDWQNRM- 113 Query: 112 NRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKW--LEK 169 E KP S + AI A + + Sbjct: 114 -------------------VGSYDDEGKPYSGTYLRTINNQLSAIFNHAVKYYGLGKSPA 154 Query: 170 APVIKIPAVRNKRVRWLEKEEAKRLIDEC--PEPLKSVVKFALATGLRKSNIINLEWQQI 227 P IKI + +R+ KE+ +E + GLR ++ LE I Sbjct: 155 TPTIKIGERKGAEMRFWTKEQYLAFSEEVMDKPASFYAFEILYWCGLRVGELLALEPNDI 214 Query: 228 DMQRRVAWVN--------------PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVH 273 D+ + + V P+ KS V + + L D + Sbjct: 215 DLGKCLIHVTKSYQRIRRRDVITSPKTPKSK--RDVVMPEFLADELADFL---------- 262 Query: 274 TKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSV 333 + + + + C G+E R HDLRH+ S LI+ G Sbjct: 263 --GSIPEERRACRIFCFTKSYLHHEMKRGCAACGLEPIRIHDLRHSHVSLLIEMGFSAIA 320 Query: 334 LQEMGGWESIEMVRRYAHLAPNHLTEHARKIDD 366 + + G E+ EM RYAHL P+ ++ A +D Sbjct: 321 IADRLGHETYEMTLRYAHLFPSKQSDMAAALDQ 353 >UniRef50_B7GVF6 Tyrosine recombinase xerC n=1 Tax=Acinetobacter baumannii AB307-0294 RepID=B7GVF6_ACIB3 Length = 398 Score = 226 bits (578), Expect = 8e-58, Method: Composition-based stats. Identities = 80/380 (21%), Positives = 153/380 (40%), Gaps = 66/380 (17%) Query: 19 GKRIKESLGTKDKRQAQELHDKRKAELWRVEKL----------GDLPDVTFEEA-CLRWL 67 GK+I +SLGT + +K +++ R + P T E ++ Sbjct: 53 GKKISKSLGTFSHADFDQNLEKLISQMQRFHQRIAQGLAPFEDEVKPANTLREFALTIYM 112 Query: 68 -EEKADKKSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQA 125 + KKS D++++ L +DI+ + ++ + Sbjct: 113 PSAEMRKKSYKDDEAKLRMHILPVIGDYPFEDINAGMLNKLLTEL--------------- 157 Query: 126 AIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKI--PAVRNKRV 183 K ++ + + A++ + A + ++ PV K+ N+ Sbjct: 158 -----------RSKGLTNASINRVRALLSVMFNMAI-NHDLIQVNPVSKVSKFKENNQIE 205 Query: 184 RWLEKEEAKRLIDECPEPLK---------SVVKFALATGLRKSNIINLEWQQIDMQRRVA 234 R+L +E KRL+D P + ++VKF L TG+RK ++++W +D+ V Sbjct: 206 RYLNAQEIKRLMDVLNAPHQHGIDNLIIVAIVKFLLLTGVRKREAMDMKWTDVDLTTGVW 265 Query: 235 WVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRID 294 + E+KS +A + LN A +L + H ++F + + + D Sbjct: 266 LL--GENKSGKARRITLNQDALAILHSL-PQQHAFIFANPMTGQPFN------------D 310 Query: 295 SKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAP 354 + ++ S + A I + R HDLRH +AS + SG L V+Q + G S + +RYAHL Sbjct: 311 MRKTFQSIMKAASIRNIRIHDLRHNFASIAVNSGQSLYVVQHLLGHASPQTTQRYAHLQS 370 Query: 355 NHLTEHARKIDDIFGDNVPN 374 + L + + + + Sbjct: 371 STLKQASEDVAAAIRAQSSH 390 >UniRef50_D2L4K8 Integrase family protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L4K8_9DELT Length = 395 Score = 226 bits (577), Expect = 9e-58, Method: Composition-based stats. Identities = 83/394 (21%), Positives = 143/394 (36%), Gaps = 69/394 (17%) Query: 5 RRNEIWYASYSLPGGKRIKESLGT-KDKRQAQELHDKRKAELWRVE-------------- 49 + I+Y Y GK I+E G + +AE + Sbjct: 26 KPERIYYVMYR-RDGKLIEEKAGRQFQDAMTPAKAARIRAERIEGKAPSNNARREAEEAA 84 Query: 50 KLGDLPDVTFEEACLRWLEEKADKKSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVS 108 K ++ T + + K + +L +D+SR E + F ++ + S Sbjct: 85 KAAEVGRWTLAKLWTEYASHKPENHALSTDRSRFETYIKPAFGEKEPAEVLTLDLDRMRS 144 Query: 109 RMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLE 168 R+ + S QT LA+ K ++R + Sbjct: 145 RLLK--------------------------QGKSPQTVKHVLALFKRLVRFGVKKGLCDS 178 Query: 169 KAP---VIKIPAVRNKRVRWLEKEEAKRLIDECPE----PLKSVVKFALATGLRKSNIIN 221 P I +P V N+ L+ +E RL+ + + ++ A+ TG+R+ + Sbjct: 179 PDPRKQTISMPRVDNETTEDLDADELARLVQAIEDEPNIQAANFMRLAMFTGMRRGELFK 238 Query: 222 LEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIG-KHHKWVFVHTKAAKRA 280 LEW+ +D +R + K ++ + LND A VL ++ +VF +R Sbjct: 239 LEWRDVDFERGFIHIRHP--KGGKSQKIPLNDAARAVLASHPHVENSPYVFPGQGGKQRV 296 Query: 281 DGTSTPAVRKMRIDSKTSWLSACRRAGIE-DFRF-HDLRHTWASWLIQSG-VPLSVLQEM 337 RA + DFR H LRH +AS L SG V L LQ++ Sbjct: 297 TIQVAS-------------NRIKARASLPADFRPLHGLRHLFASTLASSGQVDLLTLQKL 343 Query: 338 GGWESIEMVRRYAHLAPNHLTEHARKIDDIFGDN 371 +S M +RY+HL + L + + D+ G+ Sbjct: 344 LTHKSPNMTKRYSHLRDDALKQASGVASDLLGNI 377 >UniRef50_C3C7W0 Phage integrase n=2 Tax=Bacillus thuringiensis RepID=C3C7W0_BACTU Length = 398 Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats. Identities = 71/413 (17%), Positives = 143/413 (34%), Gaps = 71/413 (17%) Query: 1 MSL-FRRNEIWYASYSLP----GGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLP 55 M+ +R + W G KR G K++A ++R+ +L+ D Sbjct: 10 MATFRKRGKKWEYRIRYVDKTTGKKREISKGGFDSKKEATFHANERERQLFHGMA-ADSK 68 Query: 56 DVTFEEACLRWLEEKADKKSLDSDK-----SRIEFWLEHFEGIRLKDISEAKIYSAVSRM 110 E + WLE K S + + +F+ I+L D+++ + ++ + Sbjct: 69 KTLLSEYLIEWLETYKKGKVGQSTYILHKNNINNHIIPYFQNIKLADMNKIEYQKFINHL 128 Query: 111 HNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKA 170 N K S +T + + ++ A D + + K Sbjct: 129 IN--------------------------KGYSKRTVEIIHSTMSNSIKRAI-DLEMVYKD 161 Query: 171 PVIKIP------AVRNKRVRWLEKEEAKRLIDECPEP---LKSVVKFALATGLRKSNIIN 221 +I +K+ +L KE+ +L++ + ++ + TG+RK Sbjct: 162 FTNRILIAADHFNQHSKKENYLTKEQVSKLLNTAHKDKMIYYVLIYTLVETGMRKGEATA 221 Query: 222 LEWQ-QIDMQRRVAWVNPE-------------------ESKS-NRAIGVALNDTACKVLR 260 LEW ID+ ++ ++ ++K+ + + ++D VL+ Sbjct: 222 LEWDTNIDLDNKMIHIDRTINYHAYTPIGQKNSKDLIGKTKTYDSVRSITISDRLVSVLK 281 Query: 261 DQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRI--DSKTSWLSACRRAGIEDFRFHDLRH 318 ++ + K K + A + H LRH Sbjct: 282 TFKTYQNECKLKLGARYDKTFDFVFTTTGKPIPKSTLKNVLDRILKNAELPQIGVHGLRH 341 Query: 319 TWASWLIQSGVPLSVLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIFGD 370 T A L+++GV + +QE G +SIE+ Y+H+ P + K + G Sbjct: 342 THAVLLLEAGVEMKYIQERLGHKSIEITSNIYSHVTPKIIENEQSKYEAYVGQ 394 >UniRef50_Q98MQ9 Bacteriophage integrase n=5 Tax=Rhizobiales RepID=Q98MQ9_RHILO Length = 399 Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats. Identities = 66/403 (16%), Positives = 139/403 (34%), Gaps = 44/403 (10%) Query: 3 LFRRNEIWYA------SYSLPGGKRIKESLGTK-DKRQAQELHDKRKAELWRVEKLGDLP 55 + R+ +A GK+ ++ KR+AQ+ + L + + + Sbjct: 5 IRERSPGHWAIVLDVGEVDPKTGKKKRKWHSFTGTKREAQKECSRLITVLDQGLYV-EPT 63 Query: 56 DVTFEEACLRWL---EEKADKKSLDSDKSRIEF-WLEHFEGIRLKDISEAKIYS-AVSRM 110 T E WL + K+ + + L + +I + + + Sbjct: 64 KQTVAEFLNEWLAFVKPSVAPKTHERYTEICRKGLSPLIGNVILSKLKTDRIDAAFTTAL 123 Query: 111 HNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKA 170 + K+ + + P++ +T + ++ L A W+ L + Sbjct: 124 TAPRVDHRTKKDQREPLP-----------PLAPRTVHHYRRVLVKALGQAVT-WERLSRN 171 Query: 171 PVI--KIPAVRNKRVRWLEKEEAKRLIDECPE-PLKSVVKFALATGLRKSNIINLEWQQI 227 P P V +++ + + L++ + V A+ GLR+ I+ L W+ + Sbjct: 172 PATATTPPKVERQKMLAYDVGQTATLLETLRPTRMFVPVLLAVTCGLRRGEILALRWRHL 231 Query: 228 DM--QRRVAWV-----------NPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHT 274 ++ RR + +E KS RA VAL+ + L+ + + Sbjct: 232 ELGDNRRQMSIEESAEQTADGVRYKEPKSGRARTVALSASTVAELKAHRARQAEEQLRLG 291 Query: 275 KAAKRADGTSTPAVRKM--RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLS 332 + W+ + + RFHDLRHT A+ ++ +GV Sbjct: 292 IRPDADSFVVAQVDGQPLQPRSLTHEWVRVLGKTSLPRIRFHDLRHTHATQMLSAGVHPK 351 Query: 333 VLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIFGDNVPN 374 + E G +I + Y+H+ P + A ++D + + Sbjct: 352 IASERLGHSNIGITLDLYSHVMPGMQADAAEQVDVALQAAISS 394 >UniRef50_A8LM37 Integrase family protein n=3 Tax=Rhodobacterales RepID=A8LM37_DINSH Length = 388 Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats. Identities = 77/388 (19%), Positives = 135/388 (34%), Gaps = 65/388 (16%) Query: 7 NEIWYASYS-LPGGKRIKESLGTK----DKRQAQELHDKRKAELWRV-----EKLGDLPD 56 ++ + Y G+ ++++G QA+E+ A+ R E Sbjct: 40 SKSYVVQYRNRQTGRSRRKTIGQHGPLMTLYQAREIARGYLADALRGGDPVMEAQARRKA 99 Query: 57 VTFEEACLRWLEEKA----DKKSLDSDKSRIEFW-LEHFEGIRLKDISEAKIYSAVSRMH 111 + + ++ A +S D+S ++ L F + ++S I + + Sbjct: 100 KSMRDLADDYMTNHALPKKRPRSAAMDRSLLDRVVLPAFGRQSVDEVSHKDIQRLHNSLR 159 Query: 112 NRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAP 171 + + + LA++ + A R W P Sbjct: 160 D-----------------------------TPYQANRVLALLSKMFELAIR-WGLRGDNP 189 Query: 172 VIKIPAV-RNKRVRWLEKEEAKRLIDEC----PEPLKSVVKFALATGLRKSNIINLEWQQ 226 V +P KR RWL E RL + + + ++ L TG R ++ +W Sbjct: 190 VKGVPRFAEEKRYRWLSDNELDRLREALDAHPNQRAANAIRLQLLTGARTGEVLTSQWSD 249 Query: 227 IDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQ---IGKHHKWVFVHTKAAKRADGT 283 D+ R V +K R + L+ +LR +VF K Sbjct: 250 FDLDRGVWVKPSHHTKQKRTEHLPLSAATVALLRSIAHGRTDDSPFVFPGRKPGHPIK-- 307 Query: 284 STPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESI 343 D K W S AG++D+R HD RHT AS L+ SG L ++ + G + Sbjct: 308 ----------DLKRFWTSVTSTAGLKDYRLHDNRHTHASHLVSSGHSLPIVGRLLGHTNP 357 Query: 344 EMVRRYAHLAPNHLTEHARKIDDIFGDN 371 +RYAHLA + L + A + + Sbjct: 358 MTTQRYAHLADDPLRQAAEVMGQKLTNT 385 >UniRef50_A1WTV4 Phage integrase family protein n=1 Tax=Halorhodospira halophila SL1 RepID=A1WTV4_HALHL Length = 379 Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats. Identities = 71/379 (18%), Positives = 148/379 (39%), Gaps = 59/379 (15%) Query: 9 IWYASYSLPGGKRIKESLGTKDK---RQAQELHDKRKAELWRV-----EKLGDLPDVTFE 60 ++ Y G L + + A+ L ++ + + EK T + Sbjct: 40 TYFYRYRNHAGLTRSCKLARFREISLKDARSLAREKASIVASGHDPQEEKNTRRASPTLK 99 Query: 61 EACLRWLEEKAD--KKSLDSDKSRIEFW-LEHFEGIRLKDISEAKIYSAVSRMHNRKTKE 117 E A K+S +D+ + L ++ DI+ ++ + ++ M Sbjct: 100 EYAEECYLPHAKSYKRSWKTDEIMLNHHALPTLGTKKMSDINRNQVEAIMNDM------- 152 Query: 118 IWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAE-RDWKWLEKAPVIKIP 176 + + + T + L +I + + A + + P KI Sbjct: 153 -------------------KSRGYAPSTVDRVLTLISYMFKVAMDNEIPGVVSNPTEKIK 193 Query: 177 AV--RNKRVRWLEKEEAKRLIDECP----EPLKSVVKFALATGLRKSNIINLEWQQIDMQ 230 NK +L +EE R+++ + S+++ A+ TG RK+ I++ ++ D+ Sbjct: 194 RPVIDNKIENYLTREEVNRMLEAARRRNHPHIYSIIRMAVLTGARKAEILSARFEDFDLD 253 Query: 231 RRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRK 290 ++ + + K+ + V L + A +++++ + + P K Sbjct: 254 NKIWNI--PKGKNG-SRKVILAEKAVQMVKELPKQEGTDLL-----------FPQPGTDK 299 Query: 291 MRIDSKTSWLSACRRAGI-EDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRY 349 + + + R +GI E RFHDLRH++AS L+Q GV + ++E+ G I RY Sbjct: 300 PYQCIQKPFKAVLRDSGIDESVRFHDLRHSYASLLVQGGVNIYEVKELLGHSQITTTMRY 359 Query: 350 AHLAPNHLTEHARKIDDIF 368 AHL+ L H+ ++ + Sbjct: 360 AHLSAQGLRNHSNRLAETI 378 >UniRef50_A4XMZ7 Phage integrase family protein n=3 Tax=Clostridia RepID=A4XMZ7_CALS8 Length = 327 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 55/355 (15%), Positives = 119/355 (33%), Gaps = 61/355 (17%) Query: 57 VTFEEACLRWLEEKAD----KKSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMH 111 + ++ WL E + +S I + +LKD+ + + + Sbjct: 1 MLVKDWLNTWLWEYKKQTLRPSTFQDYESLINNHIVPSIGHYKLKDLRPEHLQALYN--- 57 Query: 112 NRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAP 171 +S T ++ + L A ++ + + Sbjct: 58 -----------------------SKHESGLSLSTIKHIHVILHSALDQALKN-GLVVRNV 93 Query: 172 --VIKIPAVR-NKRVRWLEKEEAKRLIDECP-EPLKSVVKFALATGLRKSNIINLEWQQI 227 +P + K +R L EE KR + E LK ALA+G+R ++ L+W + Sbjct: 94 SEATTLPKAKTKKEIRVLTLEEQKRFVAALEGERLKPAFLLALASGVRLGELLALKWDCV 153 Query: 228 DMQRRVAWVNPEE-----------SKS----------NRAIGVALNDTACKVLRDQIGKH 266 +++ + +K+ + + + L++ + Sbjct: 154 NLKEGTITIKRSLRRIKTYDKSLPTKTMLAFQEPKTAAGIRTIPVPPVILEELKEHRKRQ 213 Query: 267 HKWVFVHTKAAKRADGTSTPAVRKM--RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWL 324 + + + + + + +A + D FH LRHT+A+ L Sbjct: 214 LEEKLKAGSLYEDNNLVFATELGTPIEPRNFLRVFYRIIEKANL-DINFHALRHTYATRL 272 Query: 325 IQSGVPLSVLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIFGDNVPNMSHS 378 +++ V+QE+ G I Y+H+ P A K++++F + +HS Sbjct: 273 LEANEHPKVVQELLGHNDISTTLNIYSHVMPEIKKAAAMKLNNLFENINIKGNHS 327 >UniRef50_B0PGN1 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0PGN1_9FIRM Length = 402 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 71/417 (17%), Positives = 147/417 (35%), Gaps = 61/417 (14%) Query: 3 LFRR-NEIWYASYSL---PGGKRIKESLGTKDKRQA-QELHDKRKAELWRVEKLGDLPDV 57 + +R + W + G+ I + K +++ +LH +A ++ +L + + Sbjct: 12 VRKREDGRWEGRIVVGHKQNGEPIFRYVLAKTQKELLDKLHRDLEA--FQDVELTEDSRM 69 Query: 58 TFEEACLRWLEEKA----DKKSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMHN 112 T E RW+E+ +L S + I + + + ++ I ++ + Sbjct: 70 TLGEWLDRWMEDYGAATLRPNTLRSYEQFIRCYIKPYLGNKIVSRVTRMDIQKLYRKLKH 129 Query: 113 RKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV 172 + +S + AM+ L+ AE + + P Sbjct: 130 EGRVREHPEH---------------GHELSDTMVLRIHAMLHRCLKDAEAA-HVIARNPT 173 Query: 173 IK--IPAVRNKRVRWLEKEEAKRLIDECPEP--LKSVVKFALATGLRKSNIINLEWQQID 228 +P ++ + L KE+ + + + L TGLR+ I L WQ D Sbjct: 174 DGAVVPKANHRPKQILTKEQMETFLAAVERNEIWRDFFYTELTTGLRRGEICGLMWQDFD 233 Query: 229 MQRRVAWV------------NPEESKSNR-AIGVALNDTACKVLRDQIGKH-HKWVFVHT 274 + + E+K+++ + L + + LR++ +W+F Sbjct: 234 EKAGTLKILRSVNVPKAGELEIGETKTSQGRRTIRLPPSTVQRLRERKQHAVSQWIFPEP 293 Query: 275 KAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVL 334 P + R AG+ RFHDLRHT+A+ + SGV L Sbjct: 294 ---------LAPEKPVRPSAAYYWMKRILREAGLPTIRFHDLRHTFATHALTSGVDAKTL 344 Query: 335 QEMGGWESIE-MVRRYAHLAPNHLTEHARK----IDDIFGDNVPNMSHSEIMEDIKK 386 + G + + Y H+ P+ E + ++D+ G+++ + E + Sbjct: 345 SGILGHTNASFTLDTYTHVTPDMQQEASHIVGGFLEDLLGEDL-KPWQRDRPEGGAR 400 >UniRef50_C7LSP4 Integrase family protein n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LSP4_DESBD Length = 392 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 74/399 (18%), Positives = 145/399 (36%), Gaps = 65/399 (16%) Query: 2 SLFRRN------EIWYASYSL--PGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGD 53 ++ R + +Y Y L G K I+E +G + + +A + L + Sbjct: 14 GVYWRKNPENGEKTYYIRYRLGGRGSKEIEEPVGKSTSAMTEAKASQARAARMTGQTLPN 73 Query: 54 LPDVT--------------FEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDIS 99 T ++ + + D+ D S L +I Sbjct: 74 TERRTQEKAAQEAITGRWTVQKIWDEYDDAHKDRACAKPDASYANRLLPELGEKTPSEIV 133 Query: 100 EAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRA 159 + + K K +S QT+ LA++K +LR Sbjct: 134 TLDLERLRRNLA-------------------KTKSPRTRKTLSAQTQKHVLALLKRMLRW 174 Query: 160 AERDWKWLEKAPV---IKIPAVRNKRVRWLEKEEAKRLIDECPE----PLKSVVKFALAT 212 A D ++ PV ++P V N++ ++ +++ + E + + AL T Sbjct: 175 AA-DMGHIDP-PVHLKFRMPTVDNEKTEFMTEDQLSAYLKALDEESNQHCAAFFRIALLT 232 Query: 213 GLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFV 272 G+R++ ++N+ W +D++ + +K+ + + L+ A +VL+ + + +++ Sbjct: 233 GIRRTALLNVMWSDVDLENGFLTLRGATAKNEKTQTIPLSPGAVEVLKGIVRPNSPYIWP 292 Query: 273 HTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIE-DFRF-HDLRHTWASWLIQSGVP 330 R D + +AG+ DFR H LRH +AS L SG Sbjct: 293 GQNGGARED-------------MRRMGRRLRDKAGLPADFRPVHGLRHHFASHLASSGAS 339 Query: 331 LSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIFG 369 L + + + + +RYAHL+ L A DD+ Sbjct: 340 LYEVGTLLTHGDLSVTKRYAHLSDQALRRAASLADDMVK 378 >UniRef50_Q1K3L6 Phage integrase n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K3L6_DESAC Length = 397 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 74/394 (18%), Positives = 164/394 (41%), Gaps = 63/394 (15%) Query: 1 MSLFRRNEIWYASYSLPGGKRIKESLG---TKDKRQAQELHDKRKAELWRV----EKLGD 53 +++++ + GKR+ ++G ++A + K + ++ Sbjct: 41 LAVYKNGSRSWRFKQKFRGKRLFITIGPYPLFSLQEAIDKTRHFKRLIADGIDPRQEQQP 100 Query: 54 LPDVTFEEACLRWLEEKADK--KSLDSDKSRI-EFWLEHFEGIRLKDISEAKIYSAVSRM 110 +T + + A K K+ + ++ + + ++ F L DIS+ ++ ++ Sbjct: 101 QSQLTLAQFVEQDFLPYARKHYKTFHNQQNMLDKRIIKTFGATPLADISKREVMLFHQQV 160 Query: 111 HNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKA 170 + S T +HL+++ +I + A ++ LEK Sbjct: 161 CDET---------------------------SGTTGNRHLSLLSSIFKLAL-EYDLLEKN 192 Query: 171 PVIKIPA--VRNKRVRWLEKEEAKRLIDEC----PEPLKSVVKFALATGLRKSNIINLEW 224 P I R R+L+++E R I +P + +A G+RKS +++L W Sbjct: 193 PCRGIKKAKENRSRDRFLQEDEYTRFIQVLQTKLDQPSACAIFLLIALGMRKSELLSLRW 252 Query: 225 QQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVL---RDQIGKHHKWVFVHTKAAKRAD 281 + + + R + ++K+ + VALN + +L + + + WVF +++ Sbjct: 253 EDVSLADRHLHLR--DTKNGESRYVALNSVSHGLLTKMKQKRKASNPWVFPSRTSSESGH 310 Query: 282 GTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWE 341 D + ++ + CR + I R HDLR + AS L+ +GV +S++ ++ G + Sbjct: 311 L----------QDVRRTFATVCRESKITGLRIHDLRRSHASHLLNAGVDISIVGKILGHK 360 Query: 342 SIEMVRRYAHLAPNHLTE----HARKIDDIFGDN 371 S++ + YA +A + L +RKI+++ Sbjct: 361 SLKSTQIYAKVATSSLARTSEIASRKIEEVMNQA 394 >UniRef50_UPI00016AD797 phage integrase family protein n=1 Tax=Burkholderia thailandensis MSMB43 RepID=UPI00016AD797 Length = 339 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 76/369 (20%), Positives = 138/369 (37%), Gaps = 53/369 (14%) Query: 5 RRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACL 64 R N W G S +++A++ +A + + Sbjct: 7 RPNGHWTGKVRKAGYPAQ--SATFPTRKEAEKWIIDTEAAINAGRFQNLDGSALLRDVID 64 Query: 65 RWLEEKAD-KKSLDSDKSRIEFW-LEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQK 122 R+L + KK S+ R++ + + ++ A + + R Sbjct: 65 RYLRDVTPSKKGESSETWRLKAIQRDEIGSYSVGKLTPAVVANWRDR------------- 111 Query: 123 VQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKW-LEKAPV--IKIPAVR 179 L + +PVS T + + ++ +L A ++W PV ++ P Sbjct: 112 ---------RLAGTDGRPVSGSTVNREMNLLHHVLETARKEWGLGAPVNPVSEVRRPKNS 162 Query: 180 NKRVRWLEKEEAKRLIDECPE---------PLKSVVKFALATGLRKSNIINLEWQQIDMQ 230 R R L +E L+ C + L VV+ AL TG+R+ II LE +Q+ + Sbjct: 163 PARERRLTSDEKVALLAACRQTHSRSGRQSYLADVVELALETGMRQGEIIKLEIEQVRLD 222 Query: 231 RRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRK 290 R + +K+ A V L+ A ++L+ IG T V Sbjct: 223 DRFVGLRAGGTKTEEARTVPLSTRAAEILKSVIGDRT---------------TGRVWVGL 267 Query: 291 MRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYA 350 K +++ A RAGI+D FHD RH + ++ G+ + + + G ++ M+R+Y Sbjct: 268 TSDAVKRAFIRARDRAGIKDLTFHDSRHDATTRFVELGLTDTEVMSITGHKTQSMMRKYT 327 Query: 351 HLAPNHLTE 359 HL L + Sbjct: 328 HLRAKDLAK 336 >UniRef50_C4RQL8 Integrase n=2 Tax=root RepID=C4RQL8_9ACTO Length = 395 Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats. Identities = 81/395 (20%), Positives = 140/395 (35%), Gaps = 56/395 (14%) Query: 3 LFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLP-DVTFEE 61 + + ++ L GK++ G K A+ + +AE + L +T + Sbjct: 6 IEKNGPVYRIR-DLVRGKKVTIQTGYPTKTSAKNAMVQFRAEQLQGNALMPRGGQITLAD 64 Query: 62 ACLRW---LEEKADKKSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKE 117 W E+ +++S+ +RI L + L ++ V+ + Sbjct: 65 FVGEWWPSYEKTLKPTAVNSEGNRIRNHLLPILGHLTLDELDGQVTQQWVNDL------- 117 Query: 118 IWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIK--I 175 +A + E KP++ +T + ++ I AA + + P + Sbjct: 118 ------EAGVGPWPESTRGRRKPLAAKTISNCHGLLHTICGAAIAAKR-IRLNPCSSTML 170 Query: 176 PAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDM--QRRV 233 P K +++L E RLI P + +V +ATGLR I L ++D+ R Sbjct: 171 PRREPKEMKFLSDPEIGRLITALPPHWRPLVMLLVATGLRWGEAIGLRAGRVDLLAARPR 230 Query: 234 AWV----------------NPEESKSNRAIGVALNDTACKVLRDQI--GKHHKWVFVHTK 275 V +P+ +K V+ +L I K + VF K Sbjct: 231 LTVVEQLQELASTGELVFQSPKTAKGR--RTVSFTTKVALLLTPLIAGKKSDEVVFTAPK 288 Query: 276 AAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQ 335 + + W+ AC AG+ R HDLRHT A+ LI +G PLS + Sbjct: 289 GGM-----------VRTRNFRRIWVKACEEAGLPGLRIHDLRHTHAAILISAGRPLSAIS 337 Query: 336 EMGGWESIEMVR-RYAHLAPNHLTEHARKIDDIFG 369 G SI + Y HL I++ Sbjct: 338 RRLGHSSIAVTDLLYGHLREEVDEGILAAIEEAMA 372 >UniRef50_C7WMG1 Integrase n=9 Tax=Enterococcus RepID=C7WMG1_ENTFA Length = 382 Score = 225 bits (573), Expect = 3e-57, Method: Composition-based stats. Identities = 58/406 (14%), Positives = 134/406 (33%), Gaps = 69/406 (16%) Query: 4 FRRNEI---WYASYSL-----PGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLP 55 +++ WY L G K+ G + +++A+ + + E+ + + Sbjct: 5 YKKKNGEKAWYFKTYLGTDPLTGKKKYTTKRGFRTQKEAKIALARLEMEIQKNG-IPSST 63 Query: 56 DVTFEEACLRWLEEKA---DKKSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMH 111 ++TF+E WLE + S + L F I + IS A V+ H Sbjct: 64 NITFQEVAFMWLENYKNTVKESSYSRTEIIFRKHILPSFGKIEISKISTAYCQKIVNTWH 123 Query: 112 NRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAP 171 ++ + + + + + + + A + P Sbjct: 124 SKGSSKQYPLF---------------------------INYMNQVFKFAINI-GVTNQNP 155 Query: 172 VIKI--PA-----VRNKRVRWLEKEEAKRLIDECPE--------PLKSVVKFALATGLRK 216 VI + P K++++ K++ + + + ++ + +G R Sbjct: 156 VINVIVPKNQDIITSEKKIKFYTKDQLQIFLKSIEQSESAYITIRDYTLFRLLAFSGCRI 215 Query: 217 SNIINLEWQQIDMQRRVAWVNPE-----------ESKSNRA-IGVALNDTACKVLRDQIG 264 ++ L W ++++ +N K+ ++ + L+ +L+ Sbjct: 216 GELLALTWDDLNIKTGELQINKTIAKSDHYYVSNTPKTKKSNRTLILDAKTITILKKWKL 275 Query: 265 KHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWL 324 + K++ T+ + + ++A + + H RHT AS L Sbjct: 276 EQKKYLLKLGYTQPSRIFTNEENEFTINQAITDRYNIYRKKANLPNIGLHGFRHTHASLL 335 Query: 325 IQSGVPLSVLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIFG 369 +G +QE G +I+ Y HL + + K+ G Sbjct: 336 YYAGADHKEVQERLGHANIKTTLDTYTHLTNDGKEKTTEKLSKYIG 381 >UniRef50_Q2W8W7 Integrase n=2 Tax=Magnetospirillum RepID=Q2W8W7_MAGSA Length = 359 Score = 225 bits (573), Expect = 3e-57, Method: Composition-based stats. Identities = 76/370 (20%), Positives = 143/370 (38%), Gaps = 65/370 (17%) Query: 9 IWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGD--LPDVTFEEACLRW 66 W A G + ++ + K +AQ+ ++E+ R T +A + Sbjct: 25 SWQARVRRKGFPDMFKT--FRTKVEAQKWAAVTESEMARHVFTDRSLAERTTLGDALEVY 82 Query: 67 LEEKADKKSLDSDKSRIEFWLEH-FEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQA 125 +E +K+ + I+ WL+H L + + V+ Sbjct: 83 RDEVTVEKAGHQEGYVIKAWLKHPLSKRTLSSLKVRDFQAWVTE---------------- 126 Query: 126 AIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLE-KAPVIKI--PAVRNKR 182 + V +T H+ +I + E + PV+K+ P + R Sbjct: 127 -----------KKATVGPKTIRLHIGVISNLYNRLENLLEIEALPNPVLKLILPPLPEGR 175 Query: 183 VRWLE---------KEEAKRLIDEC----PEPLKSVVKFALATGLRKSNIINLEWQQIDM 229 R L + EA+ LI C ++ V+FAL +R++ I+ + W+ +D+ Sbjct: 176 DRRLNVIEHDDGTVRNEAEALIGACADAVNPWIRPAVEFALDGAMRRNEIVQMRWEHVDL 235 Query: 230 QRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVR 289 + + +K+ + VAL+ +VLR VF T A Sbjct: 236 NAGMVRLPAAITKTGVSRDVALSPAGVQVLRTLPRSIDGRVFPLTADA------------ 283 Query: 290 KMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRY 349 +++ A +RAG++D FHDLRH AS L + G+ L + + G ++++M++RY Sbjct: 284 -----LYRAFVRARKRAGLDDLHFHDLRHEAASRLREEGLDLMEIASITGHKTLQMLKRY 338 Query: 350 AHLAPNHLTE 359 H+ + E Sbjct: 339 VHVKAKDVVE 348 >UniRef50_Q3JF08 Phage integrase n=2 Tax=Nitrosococcus oceani RepID=Q3JF08_NITOC Length = 251 Score = 225 bits (573), Expect = 3e-57, Method: Composition-based stats. Identities = 70/260 (26%), Positives = 119/260 (45%), Gaps = 24/260 (9%) Query: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKIPAV 178 + A+ + S + ++LA + A ++W WLE +P+ I Sbjct: 6 RDKLASGNITRYNQKNSGGQRSPGSVNRYLAALSHTFTIAVKEWGWLEDSPMGRISKLKE 65 Query: 179 RNKRVRWLEKEEAKRLIDECPEP----LKSVVKFALATGLRKSNIINLEWQQIDMQRRVA 234 RVR+L E +RL+ C L V AL+TG R+ I+ L W+ +D+QR + Sbjct: 66 PRGRVRFLSDSERERLLKACRGSSNSFLYPAVVLALSTGARRMEIMALRWRNVDLQRGLI 125 Query: 235 WVNPEESKSNRAIGVALNDTACK---VLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKM 291 ++ E+K+ + L A L +F + + Sbjct: 126 SLH--ETKNGERRALPLAGHALDCVKRLSKVRQIDTDLLFP------------SNHNPQQ 171 Query: 292 RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAH 351 +D + W A ++AGIEDFR+HDLRH+ AS+L +G L+ + E+ G ++++MV+RYAH Sbjct: 172 PLDLRKPWEIALKQAGIEDFRWHDLRHSAASYLAMNGATLAEIAEVLGHKTLQMVKRYAH 231 Query: 352 LAPNHLTEHARKID-DIFGD 370 + H ++ IFG+ Sbjct: 232 FSETHTARVVASMNAKIFGE 251 >UniRef50_B8FKX9 Integrase family protein n=2 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FKX9_DESAA Length = 408 Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats. Identities = 79/386 (20%), Positives = 151/386 (39%), Gaps = 44/386 (11%) Query: 5 RRNEI--WYASYSLPGGKRIKESLGTK--DKRQAQELHDKRKAELWRVEKLGDLPDVTFE 60 +R++ ++ +Y LPGGK+ +E++G D R A+ K E RV K +TFE Sbjct: 31 KRSKRVRYWITYRLPGGKQRREAVGFSIEDARAAEGKRKAEKKENPRVLKKSPEETMTFE 90 Query: 61 EACLRWLE--EKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEI 118 + +L + KS + + + E F ++K+I+ + + K+ Sbjct: 91 DLAKWYLALPKVKGLKSFWRIEMNLNTFNETFGKTKIKNITALDLEKFQVDGLAQGFKKR 150 Query: 119 WKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAV 178 + K ++ +P S + L + + ++ A + +K+ Sbjct: 151 TRG------SKEEKKEGGASQPASQAYIDQILTVARTMINRAFDSDIVSGE--TVKVFRR 202 Query: 179 --------RNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQ 230 N R R L +E +R++ P + V+ A TG+R I L W ++D++ Sbjct: 203 VKNLQGGNANARDRVLTHDEFERIMANLPAHARPVIATAYYTGMRSGEIFPLTWDKVDLK 262 Query: 231 RRVAWVNPEESKSNRAIGVALNDTACKVLRDQ-IGKHHKWVFVHTKAAKRADGTSTPAVR 289 RV + ++K V + + +VL H VF+ Sbjct: 263 ERVIRLEAADTKDKEPRVVPICNELFEVLSGLPRPIHTNNVFLKK--------------G 308 Query: 290 KMRIDSKTSWLSACRRAGIE-------DFRFHDLRHTWASWLIQSGVPLSVLQEMGGWES 342 + + S +A ++A I F FHD RHT+ + + ++GVP SV+ ++ G + Sbjct: 309 EPIKKLRNSLSTAAKKANIPFGRKVKNGFTFHDFRHTFNTNMRRAGVPESVIMKITGHST 368 Query: 343 IEMVRRYAHLAPNHLTEHARKIDDIF 368 M RY + + + Sbjct: 369 RAMFDRYNTVDADDAKNAVNIMSSFL 394 >UniRef50_B8J4X3 Integrase family protein n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8J4X3_DESDA Length = 398 Score = 224 bits (572), Expect = 4e-57, Method: Composition-based stats. Identities = 74/391 (18%), Positives = 147/391 (37%), Gaps = 65/391 (16%) Query: 5 RRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKL------------- 51 + ++I+Y Y L GK+++E +G + +R K + + L Sbjct: 37 KADKIYYIMYRL-DGKKVEEKVGRESERMTVAKAAKIREQRINGVTLPNTERRRQRLEKA 95 Query: 52 -GDLPDVTFEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRM 110 + T + + + K + +D++R + +L F + ++++ + + ++ Sbjct: 96 QAEAGRWTIGKLWKAYKDNNPGLKGIVTDENRFKNYLSGFTKLSPEELTTQMVDTLRLKL 155 Query: 111 HNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKA 170 T L +++ I+ + + Sbjct: 156 L--------------------------KSGKKAGTTKNVLELLRRIINFGVKKGLCAWQD 189 Query: 171 PVI---KIPAVRNKRVRWLEKEEAKRLIDEC----PEPLKSVVKFALATGLRKSNIINLE 223 P ++P + N + L KEE R I+ ++ A TG+R++ + L+ Sbjct: 190 PSRLHFEMPKLNNVKTEMLTKEERARFIEAAKAAPNRKAGQLMLMAYYTGMRRNELFGLK 249 Query: 224 WQQIDMQRRVAWVNPEE---SKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRA 280 W ID + + E+ +KSNR + L+ ++L + ++VF R Sbjct: 250 WAHIDFEHGFINIVGEKQEGAKSNRDERIPLSPPVRELLAEVGDNGSEYVFPGKDGRSRM 309 Query: 281 DGTSTPAVRKMRIDSKTSWLSACRRAGIE-DFRF-HDLRHTWASWLIQSGVPLSVLQEMG 338 ID + AG+ DFR H LRHT+AS + +GVPLS +Q++ Sbjct: 310 ------------IDMNKQVNAIKAAAGLPKDFRPLHGLRHTFASVAVSNGVPLSHVQKLL 357 Query: 339 GWESIEMVRRYAHLAPNHLTEHARKIDDIFG 369 + + +RYAHL L A + + Sbjct: 358 THKDPTLTQRYAHLEDEALKNAANMVGNFLT 388 >UniRef50_Q65EQ4 Lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme, catalytic core n=15 Tax=Bacillus RepID=Q65EQ4_BACLD Length = 364 Score = 224 bits (572), Expect = 4e-57, Method: Composition-based stats. Identities = 60/393 (15%), Positives = 129/393 (32%), Gaps = 59/393 (15%) Query: 1 MSLFR---RNEIWYA-SYSLPGGKRIK-ESLGTKDKRQAQELHDKRKAELWRVEKLGDLP 55 M +++ R ++ SY+ G+ + + G K +A+ + L + + Sbjct: 1 MPVYKDKERGTYYFIISYTNRNGEYKQIKRRGFKSSGEAKRAEAETLLRLETDDGENE-D 59 Query: 56 DVTFEEACLRWLEEKADKKSLDSDKSRIE----FWLEHFEGIRLKDISEAKIYSAVSRMH 111 + TFE +L+ ++ S + F ++ +I I + + Sbjct: 60 NPTFEFVAKEYLKWYKKRRKASSYLKTSSIINTHLIPRFGSKKINNIRSRDIMRFQNDLL 119 Query: 112 NRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAP 171 +R + K ++ A+ A + ++ + P Sbjct: 120 DR---------------------------YAVAHVKKIHQVLSAVFNFAIKQ-EYTKDNP 151 Query: 172 VI---KIPAVRNKRVRWLEKEEAKRLIDECPEPLK-SVVKFALATGLRKSNIINLEWQQI 227 + +K + + +E K I + L ++ +G+RK ++ L W I Sbjct: 152 ARLAGNVDIEEDKHINYWTLDEFKAFIQHVDDQLYYALFMTLYYSGMRKGELLALTWGDI 211 Query: 228 DMQRRVAWVNPE-------ESKS-NRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKR 279 D ++ + K+ + + + ++L K TK Sbjct: 212 DFDSNTINIDKTVYNRIVTKPKTTSSIRKIMMPKHVMRLLAQLKAK--------TKTKMT 263 Query: 280 ADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGG 339 + + A ++ R HD RH+ AS+LI SV+ + G Sbjct: 264 YVVFGEFHDHISTTTLDRKYAEYVKAAKVKKIRLHDFRHSHASYLINRNTIPSVVAKRLG 323 Query: 340 WESIEMV-RRYAHLAPNHLTEHARKIDDIFGDN 371 + + Y+HL P+ E K++D F Sbjct: 324 HKDVGTTLNIYSHLYPSTEKEAVLKMEDDFKTA 356 >UniRef50_A4XMV7 Phage integrase family protein n=2 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XMV7_CALS8 Length = 332 Score = 224 bits (572), Expect = 4e-57, Method: Composition-based stats. Identities = 64/349 (18%), Positives = 120/349 (34%), Gaps = 62/349 (17%) Query: 44 ELWRVEKLGDLPDVTFEEACLRWLEEKA----DKKSLDSDKSRIEFWLEHFEGIRLKDIS 99 ++ + +TF+E W E A + + ++ L L + Sbjct: 23 KILKQYSKVSNSSITFKEFVDYWFEAYASTAVKPSTQKRYRQLLKPALRAIGNKPLNKVK 82 Query: 100 EAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRA 159 I + + + S T K ++ I + Sbjct: 83 PLDIQNIYIALAGTQ---------------------------SNCTILKLHRLLHEIFKH 115 Query: 160 AERDWKWLEKAPVIKI--PAVRNKRVRWLEKEEAKRLIDECP-EPLKSVVKFALATGLRK 216 A + W+++ PV K+ P K + E AKR ++ EP+ AL TG+R Sbjct: 116 A-QMWEYISDNPVKKVVPPTPEKKVFDVWDVETAKRFLEIIKDEPIYYPALIALHTGMRA 174 Query: 217 SNIINLEWQQIDMQRRVAWVNPEESKSN-----------RAIGVALNDTACKVLRDQ--- 262 I++L+W ++ + RV + E K+ V +ND K L++ Sbjct: 175 GEILSLKWCDVNFETRVISIVKSERKNRGLKTVNLKTKTSKRAVYMNDILYKELKNLYEI 234 Query: 263 -IGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWA 321 K +V P + ++ RFHDLRHT+A Sbjct: 235 TKPKPDDFVCPR-----------LPTGNLTVNYLSRKFKKLVKKHNFPLIRFHDLRHTFA 283 Query: 322 SWLIQSGVPLSVLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIFG 369 + ++ GV ++ E+ G I++ Y+H+ P E ++ ++ Sbjct: 284 TLMLSLGVNTKIVAEILGHSDIKLTADTYSHVLPTMQEEAMKEFVKLWK 332 >UniRef50_Q2IFG9 Phage integrase n=2 Tax=Cystobacterineae RepID=Q2IFG9_ANADE Length = 275 Score = 224 bits (571), Expect = 4e-57, Method: Composition-based stats. Identities = 72/306 (23%), Positives = 123/306 (40%), Gaps = 49/306 (16%) Query: 85 FWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQ 144 F +L DI A+I ++ + S + Sbjct: 5 HLSPFFGKKKLIDIGPAEIEEFKAK--------------------------KLAEGQSKK 38 Query: 145 TKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNK---RVRWLEKEEAKRLIDECPEP 201 + HLA ++ +L A +W+ + +AP +K + + ++L +EA+RL+ Sbjct: 39 SINNHLAALRKLLNLAV-EWEVIPRAPKVKGFRAKTEYITEEQFLTFDEAERLVHAAAPE 97 Query: 202 LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEE-------SKSNRAIGVALNDT 254 ++ + AL TGLR ++ L+W+ +D+ V K R V L+D Sbjct: 98 WRTFIITALKTGLRVGELLALKWEDLDLVAGQLVVRRTLWHKQEGPPKGGRNRKVPLSDE 157 Query: 255 ACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGI-EDFRF 313 A VL+ +VF + V CRRA + + Sbjct: 158 AIAVLKAHRHLKGTYVFCEADGRRLTHSRVKDVVPST-----------CRRAQLAKRLTT 206 Query: 314 HDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIFGDNVP 373 H LRHT+AS L+ GV L ++E+ G ESIEM RY+HL+P+ + + +D Sbjct: 207 HGLRHTFASHLVMRGVSLMAVKELLGHESIEMPLRYSHLSPDVKRDAVKLLDAPSSVANG 266 Query: 374 NMSHSE 379 N++ +E Sbjct: 267 NLTATE 272 >UniRef50_B1M1F6 Integrase family protein n=2 Tax=Methylobacterium RepID=B1M1F6_METRJ Length = 396 Score = 224 bits (571), Expect = 5e-57, Method: Composition-based stats. Identities = 85/402 (21%), Positives = 154/402 (38%), Gaps = 28/402 (6%) Query: 1 MSLFRRNEIWYASYSL-PGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPD--- 56 MS+++ Y + GG R + ++R+A+ + + + Sbjct: 1 MSVYKPKGSPYFLFDFQRGGHRFYGTTQETERRRAEAIEQAEIRKAEAQVRRDRRSRGAP 60 Query: 57 VTFEEACLRWLEEKA-DKKSLDSDKSRIEFWLEHFE-GIRLKDISEAKIYSAVSRMHNRK 114 +T + A +R+ E+ + + +E +E L+DI++ + V+R Sbjct: 61 MTIDIAAMRYWNERGMHTATARETERNLERLVEWIGPNTPLQDITDDTLAQLVAR----- 115 Query: 115 TKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLA-MIKAILRAAERDWKWL---EKA 170 + KV AA K P+ VS + + +++ +L A + WK E Sbjct: 116 --RRGQAKVNAARVKRPGKPLGPLGLVSPGQVNRSVTQLLRRVLTRARKAWKVALPDEPN 173 Query: 171 PVIKIPAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQ 230 + +RVR L EE RL + ++ FA TGLR+ + +L W+Q+D Sbjct: 174 WTEHMLTEPRERVRELRHEEESRLEAVERDEYRAPRLFAQITGLRRREVTSLTWRQVDFG 233 Query: 231 RRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRK 290 V V K + + + +L G+H VF + R TS K Sbjct: 234 AEVIRVI---GKGGKGHEIPITPELHLLLWPLRGQHETHVFTYRCQRTRLCPTSKRRFVK 290 Query: 291 ------MRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIE 344 T +AG+ DFR HDLRHT A+ +++ L ++Q++ S+ Sbjct: 291 GQIYPITYHGFSTHVRRGLEKAGVADFRIHDLRHTSATRTLRATKNLKIVQKLLNHSSLS 350 Query: 345 MVRRYAHLAPNHLTEHARKIDDIFGDNVPNMSHSEIMEDIKK 386 + +YAH + L + I+ + E D + Sbjct: 351 VTEKYAHADLDDLRDAM--IETAADSAARRLKSREKSRDGRH 390 >UniRef50_C6HVL4 Phage integrase family protein n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HVL4_9BACT Length = 351 Score = 224 bits (571), Expect = 5e-57, Method: Composition-based stats. Identities = 81/375 (21%), Positives = 141/375 (37%), Gaps = 63/375 (16%) Query: 2 SLFRRN----EIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRV--EKLGDLP 55 S ++RN +W G S + ++ + ++ + R + + Sbjct: 3 SFYKRNLSDSTVWEVKIRRKGYPVQMRS--FDKREDGEKWAREIESSMDRGVFKSTKEGE 60 Query: 56 DVTFEEACLRWLEEK-ADKKSLDSDKSRIEFWLEH-FEGIRLKDISEAKIYSAVSRMHNR 113 T +EA R+LEE KK ++SRIE W H L I I Sbjct: 61 KTTLKEALDRYLEEVSKHKKGHRRERSRIEKWKAHSLSSRYLASIGPKDIADY------- 113 Query: 114 KTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLE-KAPV 172 + + S +T LA+I + A W + PV Sbjct: 114 -------------------ASERKSEGFSMRTIHLELAIISHLYNYAAAKWGMRALENPV 154 Query: 173 I--KIPAVR-------NKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLE 223 ++ R R L E ++L + E +K +V AL TG+R+ +I+L Sbjct: 155 APTRVKGTDPHRGQNYRGRERTLSLSEKEKLFEHLNEEMKQIVTLALETGMRRGELISLT 214 Query: 224 WQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGT 283 +D+ +++ V +E+K+ + V L+ A L+ + K+ G Sbjct: 215 ISNVDLTKKI--VKLDETKNGDSREVPLSPAAVDTLKAVL------------GNKKIVGF 260 Query: 284 STPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGV-PLSVLQEMGGWES 342 + + +A + AG++D RFHDLRHT A+ L +G+ L ++ G + Sbjct: 261 DGKLWTMGPDRVTSVFANAAKEAGLKDIRFHDLRHTAATKL--AGIYQAHELAKILGHKV 318 Query: 343 IEMVRRYAHLAPNHL 357 + MV RY + L Sbjct: 319 LNMVMRYYNPTGEDL 333 >UniRef50_A0LL76 Phage integrase family protein n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LL76_SYNFM Length = 381 Score = 223 bits (570), Expect = 6e-57, Method: Composition-based stats. Identities = 80/385 (20%), Positives = 133/385 (34%), Gaps = 62/385 (16%) Query: 9 IWYASYSLPGGKRIKESLGTKDKRQAQELHDK-RKAELWRVEK----------LGDLPDV 57 I+Y Y GGK I+E G + + +A+ ++ Sbjct: 29 IYYIRYR-RGGKLIEEKAGRQFRDDMSAARAAGIRAKRMEGDQPTNEERREAEREVKERW 87 Query: 58 TFEEACLRWLEEKADKKSLDSDKSRI-EFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTK 116 T + K + +D++R + F ++ + +M Sbjct: 88 TITRLWEEYKRGTPGLKGIVTDENRFSKHIKPIFGDKEPGELVPLDVDRLRVKML----- 142 Query: 117 EIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIP 176 K T L +++ I+ R + I +P Sbjct: 143 ----------------------KTHKPATVRNALELLRRIVNFGVRKQLCPCLSFQIPMP 180 Query: 177 AVRNKRVRWLEKEEAKRLIDECPE----PLKSVVKFALATGLRKSNIINLEWQQIDMQRR 232 VRN++ L +E RL+ E + +VK AL TG+R+ I+ L W ID+ R Sbjct: 181 RVRNEKTEDLTPDELARLLKALSEEPNTQVAHIVKLALFTGMRRGEILKLRWTDIDLDRG 240 Query: 233 VAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMR 292 + + K + L+++A ++L + +VF A+R D Sbjct: 241 FISIR--DPKGGVDQRIPLSESARRILANHPKTDSLFVFPGRNGAQRTD----------- 287 Query: 293 IDSKTSWLSACRRAGIE-DFR-FHDLRHTWASWLIQSG-VPLSVLQEMGGWESIEMVRRY 349 S A + DFR H LRH +AS L SG V + LQ++ +S M RY Sbjct: 288 --INKSLNRIKEAAELPKDFRMLHGLRHAFASSLASSGEVDMYTLQKLLTHKSPTMTARY 345 Query: 350 AHLAPNHLTEHARKIDDIFGDNVPN 374 AHL L + +I V Sbjct: 346 AHLRDESLRRASDLAGEIIEKAVKK 370 >UniRef50_Q1MA85 Putative shufflon-specific DNA recombinase n=3 Tax=Alphaproteobacteria RepID=Q1MA85_RHIL3 Length = 317 Score = 223 bits (570), Expect = 6e-57, Method: Composition-based stats. Identities = 73/342 (21%), Positives = 134/342 (39%), Gaps = 55/342 (16%) Query: 28 TKDKRQAQELHDKRKAELWRVEKLGDLP---DVTFEEACLRW-LEEKADKKSLDSDKSRI 83 K +A++ + ++++ R D T + R+ +E K+ + RI Sbjct: 8 FDSKAEAEKWARELESQVDRFGAAPDTKILETTTLGDLLKRYKIEVSPTKRGCVQEIQRI 67 Query: 84 EFWLEH-FEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVS 142 + H L +S+ + S V+ Sbjct: 68 DVLERHEIAHRTLVGLSQPDVASFRDE---------------------------RLSSVA 100 Query: 143 TQTKAKHLAMIKAILRAAERDWKW-LEKAPV--IKIPAVRNKRVRWLEKEEAKRLIDECP 199 T + +A++ ++ A RDW + L + V ++ P +RN+R R LE +E +RL+D C Sbjct: 101 PSTAVREMAILSHVIEVAMRDWGFPLSRNVVKLVRRPVIRNERKRRLEGDEEQRLLDGCD 160 Query: 200 ----EPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTA 255 +++++ A+ TG+R+S I+ L+W I RRV + E +K+ V + A Sbjct: 161 GGKIPFMRTLLIVAIETGMRRSEILGLKWTDISHNRRVITL--EMTKNGSGREVPMTQRA 218 Query: 256 CKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHD 315 L + + W +RA I RFHD Sbjct: 219 FDALSRWKENAP--------------VEESMVFPIAPGSFEQVWRRLLKRANIVGLRFHD 264 Query: 316 LRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHL 357 LRH S L + G+ + + + G + + M++RY HL+ + L Sbjct: 265 LRHEGVSRLFERGLNVIEVSSISGHKELRMLKRYTHLSADDL 306 >UniRef50_C1IBC3 Phage integrase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1IBC3_9CLOT Length = 400 Score = 223 bits (570), Expect = 7e-57, Method: Composition-based stats. Identities = 66/404 (16%), Positives = 137/404 (33%), Gaps = 64/404 (15%) Query: 2 SLFRRNEIWYASYSL---PGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 S+ + W A+ ++ GK I++ K K + + D K + D T Sbjct: 24 SVNKYKNGWRATITIGRNSEGKLIRKQFYGKTKLEVLKKVDDFKVKNTLGLSTID-EKTT 82 Query: 59 FEEACLRWLEEKA----DKKSLDSDKSRIEFWLEH--FEGIRLKDISEAKIYSAVSRMHN 112 ++ WLEE ++D ++E+ ++LKD+ + + + + Sbjct: 83 VQQWIKMWLEEYKMNECRPSTIDRYFGIYRNYIENTNLGVVKLKDLKPLTLQNYYNELIK 142 Query: 113 RKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV 172 +K K T ++ +R A+++ + + P Sbjct: 143 KKNKTTD-------------------------TIKIINKVLSGGMRQAQKE-QLILNNPC 176 Query: 173 --IKIPAVR-NKRVRWLEKEEAKRLIDECPE-PLKSVVKFALATGLRKSNIINLEWQQID 228 + +P + + V EE + ++ + + + AL +GLR ++ L+W ID Sbjct: 177 LFVTLPKSKVKEEVMTFTMEEQRIFLNAIEDSRDRCIFNLALGSGLRLGELLALKWSDID 236 Query: 229 MQRRVAWVNP-----------EESKSN----------RAIGVALNDTACKVLRDQIGKHH 267 V+ +K+ + L L+ Sbjct: 237 FSSNEVKVSKSVKRVKCFDENTNTKTKIIEQLPKTRYSERKIPLPKATINELKRHKNIIL 296 Query: 268 KWVFVHTKAAKRADGTSTPAVRKM--RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLI 325 + + + + + + S +A I +FH LRHT+A+ L Sbjct: 297 QEKLMAGDIYIDNNLVFPNVLGGYIDARNLTKRYKSILNKANIPYRKFHALRHTYATRLF 356 Query: 326 QSGVPLSVLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIF 368 ++GV L V+Q + G S+++ Y H+ P +D Sbjct: 357 ENGVSLKVIQVLLGHSSMDITANIYTHVLPKEKIRAVDVLDKCL 400 >UniRef50_Q1GIK7 Phage integrase n=5 Tax=Rhodobacteraceae RepID=Q1GIK7_SILST Length = 334 Score = 223 bits (570), Expect = 7e-57, Method: Composition-based stats. Identities = 74/364 (20%), Positives = 141/364 (38%), Gaps = 50/364 (13%) Query: 6 RNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLR 65 R + Y GGKR + SL + + +A+ R T + Sbjct: 10 RGG--FCVYWHEGGKRRRYSLKARTREEAEPEAIDV---YRRETLDQRRGRDTVADIWEA 64 Query: 66 WLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQA 125 + ++ +K + + + L HF R I+ + V+ Sbjct: 65 YRQDLGEKPTAKTMGYTGKAVLAHFGAYRPDQITTSLCRKYVT----------------- 107 Query: 126 AIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKRVRW 185 + S T L +++ +R A ++ + ++KAP I+ PA + R+ Sbjct: 108 ---------NRTAEGKSQGTIHTELGHLRSAMRFAVKE-RIIDKAPSIERPAKPTPKERY 157 Query: 186 LEKEEAKRLIDECP-EPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSN 244 LEKEE LID + + AT R +++L W ++D QR + + ++SK+ Sbjct: 158 LEKEEIAALIDAASAPHIALAIHLLFATAGRIGAVLDLTWDRVDFQRGIINLRLDDSKTR 217 Query: 245 RAI-GVALNDTACKVLR-DQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSA 302 + V +N L+ +V + + + + +A Sbjct: 218 KGRAIVPMNSGIRAALQTAHDAALSDYVVEYAGGK--------------VKNIRKGFEAA 263 Query: 303 CRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMV-RRYAHLAPNHLTEHA 361 CRRA ++ H +RH+ A ++ +GVPL + + G ++ + + YA AP+HL + A Sbjct: 264 CRRAELDGVTLHTIRHSSAVAMVSNGVPLEKVAQYLGHSNVAITYQTYARFAPDHLQDAA 323 Query: 362 RKID 365 +D Sbjct: 324 EILD 327 >UniRef50_A1VC91 Phage integrase family protein n=1 Tax=Desulfovibrio vulgaris DP4 RepID=A1VC91_DESVV Length = 372 Score = 223 bits (569), Expect = 8e-57, Method: Composition-based stats. Identities = 85/382 (22%), Positives = 148/382 (38%), Gaps = 61/382 (15%) Query: 10 WYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLG------DLPDVTFEEAC 63 +Y ++ GK++ E +G + + ++E R + G ++T +A Sbjct: 27 FYITFKD-NGKKVFEKVGWRSEGYTAAYASDVRSERVRDIRHGKSSPQGRKGELTINDAW 85 Query: 64 LRWLEEKAD-KKSLDSDKSRIEFWL-EHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQ 121 +LE+ K S SD++ WL F ++ + I +RM ++ Sbjct: 86 ALYLEKWLHGKPSEQSDEALYRLWLAPAFGMKKMAGVRPVDIEEFKNRMLAQR------- 138 Query: 122 KVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIP--AVR 179 S QT L +++ + R ++ P + +P V Sbjct: 139 --------------------SPQTVKHALGLLRRVYRKMAAWGEYKGDIPTVSVPMPKVD 178 Query: 180 NKRVRWLEKEEAKRLIDECPEP---LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWV 236 N R+R+L +EA RL++ + V +L GLR I+ L+ +D+ R+ V Sbjct: 179 NGRLRFLTPDEAVRLVEALRKRSVLWADVSLVSLHAGLRLDEILGLQACHVDIDNRLLHV 238 Query: 237 NPEESKSNRAIGVALNDT-ACKVLRDQIGKHHK---WVFVHTKAAKRADGTSTPAVRKMR 292 + + V L D C++LR + +VF + + + + T Sbjct: 239 MDAKCGT---RTVPLADRGLCEMLRQRKAACSGAEDFVFKNRNGERINNISQTVVRVIQD 295 Query: 293 IDSKTSWLSACRRAGIEDFR----FHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRR 348 + GI D R FH LRHT+ SW+ Q GVPL V+ E+ G ++EM RR Sbjct: 296 LGFNH---------GITDRRHKVVFHTLRHTFGSWMAQRGVPLYVIGELMGHSTLEMTRR 346 Query: 349 YAHLAPNHLTEHARKIDDIFGD 370 Y+ L P + I Sbjct: 347 YSKLCPETKVDALSFITQAMNS 368 >UniRef50_C4V5B3 Prophage LambdaCh01, site-specific recombinase phage integrase family protein n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V5B3_9FIRM Length = 377 Score = 223 bits (569), Expect = 8e-57, Method: Composition-based stats. Identities = 64/389 (16%), Positives = 128/389 (32%), Gaps = 51/389 (13%) Query: 8 EIWYASYSLPG---GKRIKES-LGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEAC 63 +++ Y+ G+ +++ G + A+E + L +T Sbjct: 2 KVYDVRYNYRDPATGQIVRKKKRGFLRRIDAEEFLLQINKAQQEGVFLTP-EKLTLSTYL 60 Query: 64 LRWLEEKAD----KKSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEI 118 WL A + ++ ++ + G +K I+ +I + + + + Sbjct: 61 NTWLSSYAKVNVKASTYAQYEAIVKKRLIPWAGGCDIKAITPMQIDEFYATLLQQGRAD- 119 Query: 119 WKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAP---VIKI 175 +S ++ ++ L A + L K P V I Sbjct: 120 ------------------GKGGLSAKSVLYIHRVLNEALGHAVQK-GLLVKNPLLSVTNI 160 Query: 176 PAVRNKRVRWLEKEEAKRLIDECPEP---LKSVVKFALATGLRKSNIINLEWQQIDMQRR 232 P + + EE + L++ ++ + A GLR+ + L+W +ID + Sbjct: 161 PKAKKFKASAYSAEEIRSLLEAAAAENSFWQAAIALAAICGLRRGECLGLKWSKIDFDSQ 220 Query: 233 VAWV-----------NPEESKSNRA-IGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRA 280 + + KS + + +L+ + + + A Sbjct: 221 SITIDEQVIEIHHKIHFSTPKSTESIRTIHAPAEVFAILKRRKEELDQHKEWLGNAYDEH 280 Query: 281 DGTSTPAVRKM--RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMG 338 D + ++ R + RFHDLRH+ AS ++QSGV + E+ Sbjct: 281 DLVLCRGNGSPIRPGNFTKAFKDFLARHNMRTIRFHDLRHSCASLMLQSGVAMKTASEIL 340 Query: 339 GWESIEMV-RRYAHLAPNHLTEHARKIDD 366 G SI + Y H+ E A KI D Sbjct: 341 GHSSIAITADLYTHVMQKTKEEAAGKIGD 369 >UniRef50_A0LKH4 Phage integrase family protein n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LKH4_SYNFM Length = 348 Score = 223 bits (569), Expect = 8e-57, Method: Composition-based stats. Identities = 75/373 (20%), Positives = 144/373 (38%), Gaps = 55/373 (14%) Query: 1 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGD-LPDVTF 59 MS++RR E+++ + G RI++S T ++ +A + + L V +++ Sbjct: 1 MSVYRRGEVYWVDVKVKGHPRIRKSAATSERLKALDFEAALRRTLTGVVSHEPIRGEMSL 60 Query: 60 EEACLRWLE-EKADKKSLDSDKSRIEFWLEHFE-GIRLKDISEAKIYSAVSRMHNRKTKE 117 EA R + KKS + LE IRLKDI E ++ V ++ + Sbjct: 61 SEAMARAFKVHWNHKKSAKTVGFHARSLLEKLGNDIRLKDIGENEVRGLVRQLQSD---- 116 Query: 118 IWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPA 177 S T L++++ +LR + +W+ +++ P Sbjct: 117 ----------------------GNSAATINSKLSVLQTLLRMSCNEWRVIDRVPRFDRLK 154 Query: 178 VRNKRVRWLEKEEAKRLIDECPE----PLKSVVKFALATGLRKSNIINLEWQQIDMQRRV 233 + R+R L EE RL+ + L TG S +++L+W+ +D+ Sbjct: 155 EKEGRLRTLSPEEESRLLALLRRTGRHDAADLYMVLLDTGASLSEVLSLKWKGVDLVGGK 214 Query: 234 AWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRI 293 ++ E S R + + +L ++G G +P Sbjct: 215 IGIDVE---SGRNRILPMTRRVRSMLMQRMG----------------MGIKSPFSNVTYQ 255 Query: 294 DSKTSWLSACRRAGI---EDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYA 350 ++ +W ++ G+ F H LRHT+A+ +Q G+ L L+ + G +I + RYA Sbjct: 256 QAEYNWKWVRKQMGLGGDPGFVIHSLRHTFAARTVQRGIGLPALKALLGHSTIRLTERYA 315 Query: 351 HLAPNHLTEHARK 363 ++ Sbjct: 316 RFGAGNIDRAVDA 328 >UniRef50_C2HC71 Phage integrase family site specific recombinase n=12 Tax=Enterococcus RepID=C2HC71_ENTFC Length = 409 Score = 223 bits (569), Expect = 9e-57, Method: Composition-based stats. Identities = 61/415 (14%), Positives = 151/415 (36%), Gaps = 65/415 (15%) Query: 5 RRNEIWYASYSLPGG--------KRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPD 56 ++++ + + G K+I + G K +A+ + E+ E + P Sbjct: 12 KKSKEYRYEVYISNGIDPGTKLQKKIHKK-GFKSHEEAERFAKIVEGEIASEEYTQNNPK 70 Query: 57 -VTFEEACLRWLEEKA---DKKSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMH 111 +T E+ W+ + + ++ I+ + + +L + A ++++ Sbjct: 71 NLTIEKFMDDWINNYKMNVKEGTRIVHRANIKMYITPYIGKYKLDKYTRADHQRFINQLL 130 Query: 112 NRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAP 171 +K K+ +S T A + + A + ++++ P Sbjct: 131 TKKGLGRTKE------------------GLSVTTAKSINATLSNAFKKAIQ-LRYIKNNP 171 Query: 172 V--IKIPAVR--NKRVRWLEKEEAKRLIDECPEP----LKSVVKFALATGLRKSNIINLE 223 ++ P K+V++ ++++ ++ + GLRKS + L+ Sbjct: 172 TSFVEFPRNPSDKKKVKYYTFDQSELFLEFAKKEKSFIWYPFFLIIFDQGLRKSEALGLQ 231 Query: 224 WQQIDMQRRVAWVNPE-----------------ESKS-NRAIGVALNDTACKVL---RDQ 262 W ID + +N E ++K+ + + + K L R+Q Sbjct: 232 WADIDFSQNTLNINRERLGAAEKGPNKGLIITDDTKTPSGTRSLPMTKRVKKALLTLRNQ 291 Query: 263 IGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKT---SWLSACRRAGIEDFRFHDLRHT 319 + K ++ + + + I +T + +RA + HD RHT Sbjct: 292 VIKEFGFLPETDDHEAFLFINTYRKNKGIPIRDRTVNGASHRIEKRANLPHITVHDGRHT 351 Query: 320 WASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIFGDNVPN 374 +A+ Q+G+PL +++ G + + + YAH++P ++++ + + Sbjct: 352 FAARTRQAGIPLEDIKDFLGHKDVSTTQVYAHISPEVKKRSMNQLENYIEEQIKK 406 >UniRef50_A6NRR1 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NRR1_9BACE Length = 377 Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 63/389 (16%), Positives = 136/389 (34%), Gaps = 52/389 (13%) Query: 6 RNEIW-YASY-SLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEAC 63 R + Y Y G+R+K+ A+ + + ++EL +++ +T ++ Sbjct: 16 RKAYYVYMDYGRDEDGRRVKKYRTCATLAAARRVLREFQSELESRQQVAPRA-LTLDQWL 74 Query: 64 LRWLEEKADKKSLDSDKSRIEFWLEH-----FEGIRLKDISEAKIYSAVSRMHNRKTKEI 118 W+E+ + ++ +++ I ++ ++ + + + Sbjct: 75 EYWMEQVVEPNRAETTIYGYRKIIDNHLSDALGDIPVQKLTPRHLQEYYAML-------- 126 Query: 119 WKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKI--P 176 K +S T +H ++ A L A R + ++P ++ P Sbjct: 127 -----------------MRDKGLSPNTVRRHHDLLSAALHTAVRQ-DIILRSPTERVEPP 168 Query: 177 AVRNKRVRWLEKEEAKRLIDECPEP-LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAW 235 V + V + EE K+L L+ VVK A GLR+ I L+W +D +R Sbjct: 169 RVVPREVGYYGPEELKKLYALAEGTGLELVVKLAGMLGLRREEICGLQWSSVDFAQRRIH 228 Query: 236 V-----------NPEESKSNR-AIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGT 283 + +E+K+ + ++D ++LR + + + + Sbjct: 229 ICAARTAAGGEIIQKETKNRSSTRVLHMSDELVRLLRRERAGQAENRLALGDKWEDSGLV 288 Query: 284 STPAVRKM--RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWE 341 + + ++ RR + H LRHT+A+ G PL + + G Sbjct: 289 AVDHMGHPLSPNAVSLAFTRFIRRNNLPKITLHGLRHTFATVASAQGAPLFDIGKALGHS 348 Query: 342 SIEMV-RRYAHLAPNHLTEHARKIDDIFG 369 + R Y HL + ++ Sbjct: 349 TPATTGRIYTHLLDQNHEATLDRVAAALK 377 >UniRef50_C4XKJ5 Site-specific recombinase n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XKJ5_DESMR Length = 410 Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 79/414 (19%), Positives = 147/414 (35%), Gaps = 90/414 (21%) Query: 2 SLFRRN---EIWYASYSLPGGKRIKESLGTKDK----RQAQELHDKRKAELWRVE----- 49 + + ++A Y GKR +ESLG + +A ++ K K E Sbjct: 21 PTRKHGVQKDKYFAIYYKVDGKRREESLGWASQGMSAAKASQVLAKLKEAARTGEGATSL 80 Query: 50 ----KLGDLP--------------DVTFEEAC-LRWL---EEKADKKSLDSDKSRIEFWL 87 KL + ++TF + C +L +S+ + ++ WL Sbjct: 81 AEKRKLAEAKREEERQQEEARARENITFADYCANDYLPLARVTKKPESIRKTEEHVKNWL 140 Query: 88 -EHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTK 146 + LK+I + + + M N S ++ Sbjct: 141 GPVVGRLPLKNIRQMHMQKVLLAMAN--------------------------AGRSPRSI 174 Query: 147 AKHLAMIKAILRAAERDWKWLEKAPVIKI--PAVRNKRVRWLEKEEAKRLIDEC---PEP 201 A +AI A + ++P + P V N+R R+L + EA L+ E Sbjct: 175 QYVFATFRAIWNHARNNGFVQVQSPTKGVALPKVNNERKRYLSRPEADALLAELATRSPQ 234 Query: 202 LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRD 261 + +L TG+R S + L W +D+ + + +K + + + ++ Sbjct: 235 THDLALLSLDTGMRFSEVTGLTWGCVDLDKGRIDIL--NAKGEKDRAIPMTARVKELFES 292 Query: 262 Q-IGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIED--------FR 312 G ++ +F + S+ A + G+ F Sbjct: 293 MTPGASNELIFKSRVGGQIGK-------------ISKSFDLAVEKLGLNKDVDDPKQIFS 339 Query: 313 FHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDD 366 FH LRHT ASWLI++G L V+Q+ G + + +RY+H+A + R ++ Sbjct: 340 FHCLRHTCASWLIEAGTDLYVVQKTLGHSTPVVTQRYSHVADASIANAFRAMEA 393 >UniRef50_C6MZB6 Putative integrase n=1 Tax=Legionella drancourtii LLAP12 RepID=C6MZB6_9GAMM Length = 386 Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 90/386 (23%), Positives = 163/386 (42%), Gaps = 66/386 (17%) Query: 2 SLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEE 61 LF+R ++W+ + G RI+ES GTK ++A++ +R E+ + G P +F+E Sbjct: 8 GLFKRGQVWHIEKQVLGH-RIRESTGTKSLQEAEQYLARRCEEIRQATIYGVRPKRSFKE 66 Query: 62 ACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQ 121 A +R+L E K S+D+D ++ + L+ + + S + Sbjct: 67 AAVRFLNENQHKASIDTDAILLKSICPFIGDLTLEQVHIGTLQSFIK------------- 113 Query: 122 KVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWK------WLEKAPVIKI 175 + + T++ L +++ IL A +W WL AP IK+ Sbjct: 114 -------------AKQEAKLKTKSINNTLELVRHILNVAATEWIDENSLTWLLVAPKIKL 160 Query: 176 PAVRNKRVRW-LEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRV- 233 V++ R + L E R ++ P L + +F + TG R+ + L W+ ++RV Sbjct: 161 LPVKDARAPFPLSWSEQSRFLEALPVHLNQMARFKVNTGCREQEVCQLRWE---WEKRVP 217 Query: 234 -----AWVNPEE----------SKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAK 278 ++ P K+ V LND A V+ + G H ++VF + Sbjct: 218 SLNTSVFIIPSHINRDGELRQLVKNGEDRLVILNDEAKAVIEEVRGIHSEFVFSY----- 272 Query: 279 RADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMG 338 + + + T+W +A ++A + D R HDL+HT+ L +GV Q++ Sbjct: 273 --------NGKPITRMNNTAWRNARKKANLSDLRVHDLKHTFGRRLRAAGVSYEDRQDLL 324 Query: 339 GWESIEMVRRYAHLAPNHLTEHARKI 364 G S + Y+ ++L E A I Sbjct: 325 GHRSGRITTHYSQAELSNLLEAANLI 350 >UniRef50_Q1BC50 Phage integrase n=4 Tax=Mycobacterium RepID=Q1BC50_MYCSS Length = 442 Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 66/441 (14%), Positives = 143/441 (32%), Gaps = 65/441 (14%) Query: 2 SLFRRNEIWYASYSLPG-----GKRIKESLG-TKDKRQAQELHDKRKAELWRVEKLGDLP 55 ++++R W + G+ S G +++A + E ++ Sbjct: 4 AVYQRGRTWTYRFRAAEKDPSTGRYPTISKGGFSTEKEAWKACRDAMREADEG-RVVRPS 62 Query: 56 DVTFEEACLRWL---EEKADKKSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMH 111 T + W E D + + K + + + H ++L+ + E ++ +++ Sbjct: 63 TRTVTQFLDEWFTAVEASLDATTWQNWKDYAKSYVVPHIGNVKLQQLDEPELLRLYAKLL 122 Query: 112 NRKTKE---------------------------------IWKQKVQAAIRKGKELPVYEP 138 + I + K LP Sbjct: 123 TEGRIKQDRNYEMYCYWRRHAIDGESPAPREVADACGTTIHAARAAVRRYKSGILPTKMD 182 Query: 139 KPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKRV--RWLEKEEAKRLID 196 ++ +T AMI + A WK+ P + + R +E+ ++ + Sbjct: 183 PGLAPKTVRNIHAMIHRAMADAV-AWKYKAHNPAANVRPPKRSRSRRTVWNQEDIQKFLR 241 Query: 197 ECP-EPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVN---------PEESKSNRA 246 + S+ L TG+R+ I L W +D+ R V+ + + Sbjct: 242 AVSHDRFASLFLLELTTGIRRGQICGLRWHDVDLDVREVTVHDNRVVVAGHARDKAGGKT 301 Query: 247 I----GVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRI--DSKTSWL 300 +A++ LR ++ + T + + + Sbjct: 302 RNADQTIAIDRVTAAALRKWREHQNEERAFFGADYHPGNYVFTFEDGRPPHPDSIRQRFD 361 Query: 301 SACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIE-MVRRYAHLAPNHLTE 359 AG+ FHDLRH++A+ +++GV ++ E G + ++ YAH+ N + Sbjct: 362 RLAAVAGLPRITFHDLRHSYATAALKAGVNPKIVSERIGHADVGFFLQTYAHVLKNDDRD 421 Query: 360 HARKIDD-IFGDNVPNMSHSE 379 A + + GD + + SE Sbjct: 422 AAEQAAAFLIGDQYGSSATSE 442 >UniRef50_B6R5P1 Phage integrase n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R5P1_9RHOB Length = 365 Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 61/360 (16%), Positives = 129/360 (35%), Gaps = 50/360 (13%) Query: 30 DKRQAQELHDKRKAELWRV-----EKLGDLPDVTFEEACLRWLEE---KADKKSLDSDKS 81 +A+ + ++ + D+T E C +LEE ++ +DK Sbjct: 27 TTEEARAEAKRVLGDVAHGGDPMAARQARRKDLTVAELCDLYLEEGTATKKASTIATDKG 86 Query: 82 RI-EFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKP 140 RI + + DI + + + ++ G K Sbjct: 87 RIERHIKPVIGDLLVSDIKANHVRTLLKKVAEGNLPR---------EGVGPVADKLGGKG 137 Query: 141 VSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKR-VRWLEKEEAKRLIDECP 199 +++T ++ I A + + PV + +++ R+L + E RL + Sbjct: 138 TASRTV----GLLGGIFSFA-NELGYRTDNPVHGVKRFPDQKNQRYLTQSELTRLFELLE 192 Query: 200 EPLKS--------VVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVAL 251 E ++K TG R+ I L+W ++ +++ E+SK+ + + + Sbjct: 193 EIEADGANPKAVKIIKLLALTGARRGEIEQLKWSEVFLEQGTLH--FEDSKTGQK-SIPI 249 Query: 252 NDTACKVLRD---QIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGI 308 + +LR+ + +VF + + + W + G Sbjct: 250 SAAVIGLLREAEQERCIDSPYVFPSERG------------DGFYVGATKVWRDLRTKFGD 297 Query: 309 EDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIF 368 E R HDLRH++AS + G L ++ + G + +RYAHL+ + L + ++ Sbjct: 298 EKLRMHDLRHSFASLAVAGGASLPMIGALLGHKDTATTQRYAHLSADPLRSISDQVGAKL 357 >UniRef50_C9AQ08 Phage integrase n=15 Tax=Enterococcus faecium RepID=C9AQ08_ENTFC Length = 379 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 71/407 (17%), Positives = 146/407 (35%), Gaps = 63/407 (15%) Query: 1 MS-LFRRNEIWY--ASYSLPGGK--RIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLP 55 M+ L +R W SY GK +I++S G K K +A++ ++ + L + K GD Sbjct: 1 MARLVKRGNSWQYEISYKKDDGKYTKIRKS-GFKTKGEAKDAANELEYNLNKGLK-GDRK 58 Query: 56 DVTFEEACLRWLEEKAD----KKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMH 111 ++ + W++ + + + + ++ + + D+ +++ Sbjct: 59 NLLLSDYFEDWMQLYKEGTVSPITYRKYEDTLMNIKKYMPAVLISDLDRVGYQRFLNKYA 118 Query: 112 NRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAP 171 K T K I+A L+ A + + P Sbjct: 119 KDHVK---------------------------STVIKFNNHIRASLKDAVEE-GLIPFDP 150 Query: 172 VIK-----IPAVRNKRVRWLEKEEAKRLIDECPEPLKS------VVKFALATGLRKSNII 220 K +++ K ++L+ ++ K L+ E L + +V A ATG+R + ++ Sbjct: 151 TRKAVIKGKDSLKPKEDKYLDYDQFKSLMKLVEENLSAQYSSPMLVLVAGATGMRFAELL 210 Query: 221 NLEWQQIDMQRRVAWVNPE---------ESKSN-RAIGVALNDTACKVLRDQIGKHHKWV 270 L W+ ID + ++ +N ++K+ ++++ +L+ + Sbjct: 211 GLTWEDIDFEDQIITINKTWNYKLNEWGKTKNETSNRKISIDKHTIDLLKKFKINQKELF 270 Query: 271 FVHTKAAKRADGTSTPAVRKMRID-SKTSWLSACRRAGIED-FRFHDLRHTWASWLIQSG 328 + + + GIE F H LRHT AS L+ G Sbjct: 271 DNFEVKNPHNFVFFNLKNGLVSSNAVSKYLRKKLKELGIEKQFTLHGLRHTHASILLYQG 330 Query: 329 VPLSVLQEMGGWESIEMVR-RYAHLAPNHLTEHARKIDDIFGDNVPN 374 V + + + G S+E Y H+ + KI+ +F N Sbjct: 331 VNILSVSKRLGHSSLETTMSTYLHIVRELEDQDKEKINAVFDSLYKN 377 >UniRef50_B1I9D1 Site-specific recombinase, phage integrase family n=15 Tax=Streptococcus RepID=B1I9D1_STRPI Length = 377 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 68/400 (17%), Positives = 136/400 (34%), Gaps = 55/400 (13%) Query: 1 MSLFR-RNEIWYASYS-----LPGGKRIKESLGTKDKRQAQELHDKRKA-ELWRVEKLGD 53 M++ + ++ W S + +R G K K++A E ++ EL Sbjct: 1 MAIRKGKDGNWIVDISNGFDPITLKQRRIVRKGYKTKKEAIEAEHYLRSVELKERFYGAK 60 Query: 54 LPDVTFEEACLRWLEEKADKKSLD----SDKSRIEFWLEHFEGI-RLKDISEAKIYSAVS 108 + E E+ + + D + + ++F + + ++ IY Sbjct: 61 ITIPILYELLKE--EDSINHRKASYINTQDNNYNKHIKDYFSMVDNVGKLTYEDIYQFRE 118 Query: 109 RMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLE 168 + + + KP+ST T K + ++K I R + Sbjct: 119 HLRQK-------------------VAKNSDKPLSTNTINKIMILLKKIFDVGLRK-GYYT 158 Query: 169 KAPV--IKIPAVRNKRVRWLEKEEAKRLI---DECPEPLKSVVKFALATGLRKSNIINLE 223 P IK + ++++ +E + + + +K + TGLR + L Sbjct: 159 SNPANLIKKLPIEKTKMQFWTVKEFQHFLTLFETEEYNIKLLFTVLFFTGLRLGEALALT 218 Query: 224 WQQIDMQRRVAWVNP-------------EESKSNRAIGVALNDTACKVLRDQIGKHHKWV 270 WQ ID + ++K+ + +N L+ K + Sbjct: 219 WQDIDFTSNTIHITKSVYVNKGISHVSTTKTKAGTRRII-INKKLSHELQQWQQKQKHLL 277 Query: 271 FVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRR-AGIEDFRFHDLRHTWASWLIQSGV 329 T + + + + + R + ++ R HD RH+ AS LI G Sbjct: 278 EQFTSDSMTLQVFQGSPITITKNAVENQYKKILERDSTLKKIRIHDFRHSHASLLINQGE 337 Query: 330 PLSVLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIF 368 V++E G SI Y+HL P+ + A K+D++ Sbjct: 338 DYLVVKERLGHASITTTIDTYSHLYPSKQKDLADKLDELL 377 >UniRef50_B6ASA1 Recombinase n=12 Tax=Bacteria RepID=B6ASA1_9BACT Length = 373 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 73/375 (19%), Positives = 143/375 (38%), Gaps = 38/375 (10%) Query: 1 MSL-FRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKL--GDLPDV 57 M+ +R+ W A+ G RI + K +A+ + E+ R + + + Sbjct: 13 MAYFRKRSGSWEATIDKKGFNRISRT--FNTKTEAEVWTRHIENEMDRGIFVSRKEAENT 70 Query: 58 TFEEACLRW-LEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTK 116 T EA R+ E + KK + +RI FW H ++ + + Sbjct: 71 TLAEALDRYGREISSGKKGERQEIARIRFWKSH-----------PMAKRFLASIQGKDIA 119 Query: 117 EIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLE-KAPV--I 173 ++++ + + LA+I + A ++W PV I Sbjct: 120 AFRDERIKD--------------GYAANSVRLDLAIISHLFEIARKEWGMAGLVNPVQQI 165 Query: 174 KIPAVRNKRVRWLEKEEAKRLIDECPEP-LKSVVKFALATGLRKSNIINLEWQQIDMQRR 232 ++P R R L E +R++ L + +FA+ TG+R++ I + W+ +D+++R Sbjct: 166 RLPLKPPGRDRRLMSGEIERILSASGSSVLPDIARFAIETGMRQAEIAGMTWELVDLKKR 225 Query: 233 VAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVF-VHTKAAKRADGTSTPAVRKM 291 + +K+ V L A ++L + V+ + + A A + R + Sbjct: 226 TVTLL--NTKNGEKRIVPLPIEAVRILSGLPRRIDGNVWGITSHAVAVAWRRAVSRARAV 283 Query: 292 RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAH 351 A + D FHDLRH S + G+ ++E+ G ++ M+ RY H Sbjct: 284 YEKECEEKGEKPDPAFLTDLTFHDLRHEATSRFFELGLRAEKVKEITGHKTYSMLARYTH 343 Query: 352 LAPNHLTEHARKIDD 366 L + ++ Sbjct: 344 LKAEDIAMEIDSLEK 358 >UniRef50_B6G0S2 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6G0S2_9CLOT Length = 376 Score = 221 bits (565), Expect = 2e-56, Method: Composition-based stats. Identities = 67/396 (16%), Positives = 140/396 (35%), Gaps = 60/396 (15%) Query: 2 SLFRRNEIWYASYSLP--GGKR--IKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDV 57 + +R ++ + GKR I++S T +K +A + +K E + E L D+ Sbjct: 11 GVRKRGNTYHYYFDGKTIDGKRNKIEKSAKTSNKSEALKQLEKAIEEYYMSEIDFTLSDI 70 Query: 58 TFEEACLRWLEEKADK----KSLDSDKSRIEF-WLEHFEGIRLKDISEAKIYSAVSRMHN 112 +F EA ++L E + + K ++ ++ E LKDI I + + M Sbjct: 71 SFAEAREKFLSEYVANDLKDSTYTNYKQKLNKPQIKVLEIYLLKDIRAKHIQNIIDYMA- 129 Query: 113 RKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV 172 S L I ++ R + ++ P Sbjct: 130 -------------------------LNGFSKNMVKNTLRTISSLFNFCIRA-ELIKDNPC 163 Query: 173 IKI----PAVRNKRVRWLEKEEAKRLIDECPE-PLKSVVKFALATGLRKSNIINLEWQQI 227 K+ + +R L +E KR+++ + L TG+R+ L W+ + Sbjct: 164 DKVVLPSKLTQPERKVALTNKEVKRILNRFKNTHWYLSLMLPLYTGMRRGECCGLRWKNV 223 Query: 228 DMQRRVAWVNP------------EESKSNRA-IGVALNDTACKVLRDQIGKHHKWVFVHT 274 D+ + + +V K+ + + + + L+ Q+ ++ + Sbjct: 224 DLDKGIIYVRENLTQDKGKKWIISTPKTKSSIRTINIPLPLLEALKWQLERNKSN---NV 280 Query: 275 KAAKRADGTSTPAVRKMRIDSKTSWLSACR-RAGIEDFRFHDLRHTWASWLIQSGVPLSV 333 + D+ GI+ F +H+LRHT+A+ LI+ G + Sbjct: 281 ATNSDTHVLVRDNGSIITNDTLKYLSRVINYDLGIK-FNYHNLRHTYATLLIEKGANIKD 339 Query: 334 LQEMGGWESIEMVR-RYAHLAPNHLTEHARKIDDIF 368 + + G SI+ Y + N + ++ ++ Sbjct: 340 VSVLLGHASIKTTMDIYVNNTDNMRDKTLNILNTLY 375 >UniRef50_C5TV13 Integrase family protein n=1 Tax=Desulfovibrio vulgaris RCH1 RepID=C5TV13_DESVU Length = 395 Score = 221 bits (565), Expect = 2e-56, Method: Composition-based stats. Identities = 74/385 (19%), Positives = 148/385 (38%), Gaps = 27/385 (7%) Query: 3 LFRRN---EIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTF 59 + + ++ GK +E G + + + +A + +LG P + Sbjct: 19 TRKHGSKPDRYFFIRYKTDGKSKEEGAGWASEGMTSQKASQLRARITENIRLGRRPQ-SL 77 Query: 60 EEACLRWLEEKA-----DKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYS---AVSRMH 111 E E + ++++ ++ + EFW +H+ + + + ++ Sbjct: 78 AEMREMMREAREQAAIEERRAANAATTMNEFWEKHYLPSSTLHKTPQTMKTESGYYAKWI 137 Query: 112 NRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAP 171 + + + + + S T LA+I I A + P Sbjct: 138 RPVLGDSALSDLTPPLIE-QVASNAMTAGRSAATIRHLLAIISQIWGMARNHEIVNGECP 196 Query: 172 V--IKIPAVRNKRVRWLEKEEAKRLIDECPEP---LKSVVKFALATGLRKSNIINLEWQQ 226 IK P N+R+R+L + EA L+ E + +L GLR I +L W Sbjct: 197 CTRIKKPRKDNRRMRFLTEAEASTLLVELEKRSKDTHDSALLSLFCGLRAGEIHSLTWTD 256 Query: 227 IDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHH--KWVFVHTKAAKRADGTS 284 ++ ++ + K+ + + D +L ++ + + ++VF AKR + Sbjct: 257 LNFTSGTIYIR--DPKNKHSRHAYMTDEVRSMLIERSKQLNATEYVFPAQNGAKRNWVSD 314 Query: 285 TPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIE 344 T ++ + +R FH LRHT+ASWL+Q G PL + E+ G ++E Sbjct: 315 TFERVVDQLGLNDGITDSRQR-----VVFHTLRHTFASWLVQDGTPLYTVAELMGHTTLE 369 Query: 345 MVRRYAHLAPNHLTEHARKIDDIFG 369 M +RY+HL+P+ + A + Sbjct: 370 MTKRYSHLSPDTVRAAALTLQGRLN 394 >UniRef50_A7FCB1 Shufflon-specific DNA recombinase n=2 Tax=Enterobacteriaceae RepID=A7FCB1_YERP3 Length = 375 Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats. Identities = 66/312 (21%), Positives = 131/312 (41%), Gaps = 48/312 (15%) Query: 53 DLPDVTFEEACLRWLEEKAD-KKSLDSDKSRIEFWLEHFEGIRL-KDISEAKIYSAVSRM 110 + ++ +A +L++ + KK + R+ ++ L +I+ I Sbjct: 4 RVKNIPLSKALDIYLDKISFFKKGGMQEHYRVNTIKKYKLSTLLTNNITTVDIAEYRDE- 62 Query: 111 HNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKA 170 + K +S+ T LA++ + + +W + Sbjct: 63 -------------------RLKTVKPNGKTISSNTVRLELALLSHLFKVGIVEWGIAREN 103 Query: 171 PV--IKIPAVRNKRVRWLEKEEAKRLIDECPEP----LKSVVKFALATGLRKSNIINLEW 224 PV ++ P R R ++ E +RLI E S++ A+ T +R+ I++L+W Sbjct: 104 PVLLVRKPKASEGRNRRVQPAEHRRLIRYADEHSTGECASIINLAIETAMRQGEILSLQW 163 Query: 225 QQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTS 284 + +D+++ VA + E+K+ + V L+ A ++LR K VF +T Sbjct: 164 EYVDLRQGVAHL--PETKNGTSRDVPLSAKAREILRKCSPKSSGSVFSYTSNG------- 214 Query: 285 TPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSG-VPLSVLQEMGGWESI 343 K++W ++GI+D FHDLRH S ++SG + + + + G +S+ Sbjct: 215 ----------FKSAWRCIIIKSGIKDLHFHDLRHEGVSRFVESGRLNIMEVAAISGHKSL 264 Query: 344 EMVRRYAHLAPN 355 M++RY HL + Sbjct: 265 SMLKRYTHLKAS 276 >UniRef50_A6SV87 Site-specific recombinase, phage integrase family n=1 Tax=Janthinobacterium sp. Marseille RepID=A6SV87_JANMA Length = 328 Score = 221 bits (564), Expect = 4e-56, Method: Composition-based stats. Identities = 69/365 (18%), Positives = 138/365 (37%), Gaps = 57/365 (15%) Query: 3 LFRRN-EIWYASYSLPGGKRIKESLGTKDKRQAQELHDK--RKAELWRVEKLGDLPDVTF 59 + +R + + A + G + ++ K A D+ R + R + ++T Sbjct: 4 IRKRAADQFQARVRIKGNPELSKT--FSTKAAAVHWADEQERLVKQGRGSAILLANNLTI 61 Query: 60 EEACLRWLEEKAD-KKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEI 118 A R+ E KK + R+ W + L ++ + ++ + + Sbjct: 62 TAALDRYAREVTPLKKGWKQELVRLRRWQSN----PLAQLT-------MPQLRAAELAKY 110 Query: 119 WKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKW---LEKAPVIKI 175 Q++ + T LA+I + A +DW + +I+ Sbjct: 111 RDQRLSD--------------GLGANTVRLELALISHVYEVAIKDWGLEVLINPVRIIRK 156 Query: 176 PAVRNKRVRWLEKEEAKRLIDECPEP----LKSVVKFALATGLRKSNIINLEWQQIDMQR 231 P + R R L + E L++ C + L+ V+ AL T +R+ I +L + ID+ Sbjct: 157 PKLPRGRERRLTEGEEDLLLEYCKKKGAALLRLVIILALETAMRRGEIASLHTENIDLDS 216 Query: 232 RVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKM 291 R+ ++ +++K+ V L+ A K L + + H + Sbjct: 217 RLIFL--DQTKNGDKRKVPLSRRAQKELENYLCGKHGELVP-----------------LH 257 Query: 292 RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAH 351 + ++ AC+ GI HDLRH S L + G + + + G +++ M++RY H Sbjct: 258 PDNISGAFSQACKVCGISGLTLHDLRHEATSRLFEKGFNMMEVAAITGHKTLTMLKRYTH 317 Query: 352 LAPNH 356 L Sbjct: 318 LDTAD 322 >UniRef50_D2NYS0 Integrase n=1 Tax=Listeria monocytogenes 08-5578 RepID=D2NYS0_LISMO Length = 383 Score = 221 bits (564), Expect = 4e-56, Method: Composition-based stats. Identities = 72/404 (17%), Positives = 158/404 (39%), Gaps = 63/404 (15%) Query: 1 MSLFRRNEIW--YASYSLPGGK--RIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPD 56 M++++R W S+ GK RI + K++AQ K +L + L + Sbjct: 1 MAVYKRENYWSYRISFKKENGKYGRINSDKKYRTKKEAQLAESAIKNKLSKGFHLDEGET 60 Query: 57 VTFEEACLRWLEEKAD-KKSLDSDK---SRIEFWLEHFEGIRLKDISEAKIYSAVSRMHN 112 + F + W + K S+++D S + F +F+GI+LK+++ K +++ Sbjct: 61 L-FTDYFEEWFKIYKKGKLSIENDVDINSTLNFVKANFDGIKLKNLTRKKYQEVLNKYGE 119 Query: 113 RKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV 172 + +T T K ++A ++ A ++ + K P Sbjct: 120 ER---------------------------ATATVKKKHTYMRACIKDAVQE-GVIYKDPT 151 Query: 173 IKIP-----AVRNKRVRWLEKEEAKRLIDECPEPL------KSVVKFALATGLRKSNIIN 221 ++ + + ++L +++ L ++++ F +ATG R S + Sbjct: 152 YRVRAIGNAPTQKESEKFLTEKQLIILTKNLMNTHKVEYTSRNIIFFQIATGCRFSEALG 211 Query: 222 LEWQQIDMQRRVAWVNPE----------ESKS-NRAIGVALNDTACKVLRDQIGKHHKWV 270 L W +D +++ +N ++K+ + + +++ ++LR+ + K+ Sbjct: 212 LTWDCVDFEKKSVIINKTWDYKYTKFFSDTKNFSSKRSITIDEKTIELLREIKLEQTKFE 271 Query: 271 FVHTKAAKRADGTSTPAVRKMRID--SKTSWLSACRRAGI-EDFRFHDLRHTWASWLIQS 327 K + ++ + + C ++GI H LRHT AS L+ Sbjct: 272 LKKNIRNKHNLVFCSFDSFQVVSNNAVNKTLKKFCEKSGITPSITSHALRHTHASLLLFK 331 Query: 328 GVPLSVLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIFGD 370 V + L + G SI + Y+H+ + +R +D+I Sbjct: 332 NVNIKYLSKRLGHNSITTTLQTYSHIIDEMEQQESRHVDNIISS 375 >UniRef50_A4NZB4 Prophage integrase n=1 Tax=Haemophilus influenzae 22.4-21 RepID=A4NZB4_HAEIN Length = 300 Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats. Identities = 102/328 (31%), Positives = 158/328 (48%), Gaps = 39/328 (11%) Query: 1 MSLFRRN-EIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTF 59 MS+ + +W + P G+RI+ S T +KR AQE HDK K ELW+VEKL P+ T Sbjct: 1 MSIRKNKYGVWEIDIATPSGERIRCSAKTTEKRLAQEYHDKLKHELWQVEKLNKKPERTI 60 Query: 60 EEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIW 119 E A +R+LE +K + +E+W E G L ++ I +A+ Sbjct: 61 EGALIRFLEVSQGQKDFATKIRHVEYWREVLAGRLLSSLTTDDILNALP----------- 109 Query: 120 KQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVR 179 +P+S T+ ++ + I L A++ W++ P I Sbjct: 110 ------------THKTGTKEPISPSTQNRYRSSIMRALSIAQQS-GWIDNIPYIPRNKEP 156 Query: 180 NKRVRWLEKEEAKRLIDECP-EPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNP 238 RVRW+ + +A+ LI+ + +K V FALATG R S I+ L W +ID ++++A V+ Sbjct: 157 KVRVRWISQVKAQGLINALQLDWMKDVCAFALATGARASEILTLTWDKIDFEKQIAIVSS 216 Query: 239 EESKSNRAIGVALNDTACKVLRDQIGKH-HKWVFVHTKAAKRADGTSTPAVRKMRIDSKT 297 + +KS RA + L A VL+ + +VF K +++ K Sbjct: 217 DIAKSGRARSLLLGTEAMDVLKRRASLRMSPYVFHRGKG------------KRISEVDKY 264 Query: 298 SWLSACRRAGIEDFRFHDLRHTWASWLI 325 + A +R IE+FRFHDLRHTWASW + Sbjct: 265 DFNRALKRCKIENFRFHDLRHTWASWHV 292 >UniRef50_UPI0001C375E4 hypothetical protein RflaF_02473 n=2 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C375E4 Length = 399 Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats. Identities = 64/405 (15%), Positives = 131/405 (32%), Gaps = 59/405 (14%) Query: 2 SLFRRNEIWYASY---SLPGGKRIKESLGTKD---------KRQAQELHDKRKAELWRVE 49 ++ +R + G ++ +++ K +++ Q+ + + + + Sbjct: 3 TIRKRGNSYQIRVSCGYDTSGNQVVQTMTWKPADGMNKKQIEKELQKQAILFEDKCMKGQ 62 Query: 50 KLGDLPDVTFEEACLRWLEEKAD----KKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYS 105 ++ F++ +W EE A S + K +RL I+ I Sbjct: 63 ---VTANIKFQDFAEQWFEEYAKLNLRNTSYERMKQLTVRVYPAIGHLRLDKITSRHIQQ 119 Query: 106 AVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWK 165 ++ + + +P+S +T HL+ I + A + + Sbjct: 120 FINDLA------------------LNGKSLKNGRPLSRKTAVHHLSFISDVFSYAVK-ME 160 Query: 166 WLEKAPVIKI--PAVRNKRVRWLEKEEAK---RLIDECPEPLKSVVKFALATGLRKSNII 220 L P ++ P K EE +L++ P + A+ +G R+ ++ Sbjct: 161 MLTDNPCKRVTVPKGEKKEKDIYTLEEVAHLFQLLETAPLKYRVFFTLAIYSGFRRGEML 220 Query: 221 NLEWQQIDMQRRVAWVNPE------------ESKSNRA-IGVALNDTACKVLRDQIGKHH 267 LEW+ ID + V V +K+ ++ + + +LR+ + Sbjct: 221 GLEWKDIDWEHNVISVRRTSNYTASKGIYTDTTKTKKSQRSLKFPQSVMDLLREYKAEQD 280 Query: 268 -KWVFVHTKAAKRADGTSTPAVRKMRIDSKTSW-LSACRRAGIEDFRFHDLRHTWASWLI 325 + V + TK R M ++ W C H LRH +AS LI Sbjct: 281 EERVKLGTKWQDYDRLFVKWDGRPMNNNTPYFWLKEFCEENNFRFCDIHSLRHFYASALI 340 Query: 326 QSGVPLSVLQEMGGW-ESIEMVRRYAHLAPNHLTEHARKIDDIFG 369 GV + + G Y H+ I + Sbjct: 341 NEGVDAATVSGALGHSTITTTTSIYCHVFNQAQARAGDAIASVLD 385 >UniRef50_Q30Q21 Phage integrase n=1 Tax=Sulfurimonas denitrificans DSM 1251 RepID=Q30Q21_SULDN Length = 368 Score = 220 bits (562), Expect = 5e-56, Method: Composition-based stats. Identities = 72/351 (20%), Positives = 136/351 (38%), Gaps = 49/351 (13%) Query: 30 DKRQAQELHDKRKAELWRVE----KLGDLPDVTFEEACLRWLEE-KADKKSLDSDKSRIE 84 + A + + K L E K TFE+A L + E K +KK+ SD+ Sbjct: 51 TVKDAYDRLIQAKHHLMTGEESPFKSQRAKKFTFEDAWLAYYEWAKVNKKTYISDEQYYR 110 Query: 85 -FWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVST 143 F +K I I +Y K + Sbjct: 111 LHIAPTFANKDIKSIKSKDIEQF--------------------------KQLYTSKGYAA 144 Query: 144 QTKAKHLAMIKAILRAAERDWKWLEK--AP----VIKIPAVRNKRVRWLEKEEAKRLIDE 197 Q+ ++ +++ I+ A ++ ++ P +K+P + N R +L KE+A+ ++DE Sbjct: 145 QSVKHYIGLMRHIINYAIKN-DLIKNYANPISGGKVKLPTIDNARQAFLSKEQARVILDE 203 Query: 198 C----PEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALND 253 L + L TG R S + +L W I+ + + + + +K+ A V +N+ Sbjct: 204 LLQYENPQLYQLTILLLYTGARFSEVASLTWNNINFETNMIY--FKATKNGNARWVFMNE 261 Query: 254 TACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRF 313 +V+ + + + K+ + + + + ++ Sbjct: 262 LVKEVIEQLKADKNNNLIIANTKGKQMERMLHSWQIVVDNIIDENKEADAKQ----RVTV 317 Query: 314 HDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKI 364 H LRHT ASWL +G+ + ++E G +++EM RY+HL PN E + Sbjct: 318 HSLRHTHASWLAMAGLDILHIKEQLGHKTLEMTMRYSHLIPNKRHEATELL 368 >UniRef50_D0KZD4 Integrase family protein n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KZD4_HALNC Length = 348 Score = 220 bits (562), Expect = 5e-56, Method: Composition-based stats. Identities = 85/373 (22%), Positives = 145/373 (38%), Gaps = 46/373 (12%) Query: 1 MS-LFRRNEI-WYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLG--DLPD 56 M+ + +R + W G ++ +++A ++E+ R + Sbjct: 1 MAYIQKRGDYQWRVQIRRKGHPTQCKT--FFTRKEADAWARLIESEMDRGVFFSRVEAES 58 Query: 57 VTFEEACLRWLEEK-ADKKSLDSDKSRIEFWLEH-FEGIRLKDISEAKIYSAVSRMHNRK 114 + EA R+ +E + KKS + RI FWL H L A Sbjct: 59 TSLAEALERYRKEVTSRKKSAHREGVRINFWLTHPLSSRMLASFRGADFARFRDD----- 113 Query: 115 TKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDW---KWLEKAP 171 + +S T LA+I + A +W L Sbjct: 114 ---------------------RRKEGISDSTIRLDLALISHVFTIARTEWQMEGLLNPVR 152 Query: 172 VIKIPAVRNKRVRWLEKEEAKRLIDEC----PEPLKSVVKFALATGLRKSNIINLEWQQI 227 I +P+ KR R LE E RL+ E E + V FA+ T +R+S I++L Q I Sbjct: 153 SIAMPSASRKRDRRLEAGELDRLLVELRKSRNEYVVPAVLFAIETAMRQSEILSLRTQDI 212 Query: 228 DMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQI-GKHHKWVF-VHTKAAKRADGTST 285 D +++ A++ +++K+N V L+ A +L H +F V RA S Sbjct: 213 DREKQTAYL--KDTKNNEPRVVPLSRAAMGILDTMPLPLHGGRLFSVTQDGLIRAFSRSV 270 Query: 286 PAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSG-VPLSVLQEMGGWESIE 344 R + I+ S + + + +FHDLRH S ++G + + + ++ G ++I Sbjct: 271 TQARNVYIEDCISANAQPDDHFLNNLKFHDLRHEATSRFFETGNLEMMEVAQITGHKTIT 330 Query: 345 MVRRYAHLAPNHL 357 M+ RY HL L Sbjct: 331 MLSRYTHLRAEDL 343 >UniRef50_C7I1A8 Integrase family protein n=1 Tax=Thiomonas intermedia K12 RepID=C7I1A8_THIIN Length = 340 Score = 220 bits (562), Expect = 6e-56, Method: Composition-based stats. Identities = 89/388 (22%), Positives = 136/388 (35%), Gaps = 75/388 (19%) Query: 1 MSLF-RRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLG--DLPDV 57 M+ F +R W A G + S K +A+ K ++E+ R + + V Sbjct: 1 MASFQKRAGAWRALIRRKGYPAL--SATFDTKAEAEAWARKTESEIDRGQHVDHRPAKAV 58 Query: 58 TFEEACLRW-LEEKADKKSLDSDKSRIEFWLEH-FEGIRLKDISEAKIYSAVSRMHNRKT 115 TF + R+ +E KK D+++SRI F LEH + D+ Sbjct: 59 TFSDCLRRYAVEVSEQKKGADAERSRIVFLLEHPLSKRAIGDLRPVDFARHRDE------ 112 Query: 116 KEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKW-LEKAPV-- 172 VS + LA+I + A R+W L P+ Sbjct: 113 ---------------------RLAAVSPASVRLELALISHLFSVAIREWGLGLSSNPIQQ 151 Query: 173 IKIPAVRNKRVRWLEKEEAKRLIDECPE------------------PLKSVVKFALATGL 214 I P V+N R R L +E +RL K +V AL T + Sbjct: 152 ISKPKVQNARDRRLAGDEEERLFAAIDAICAIRTPRANRAAVHPAMWFKQIVILALETAM 211 Query: 215 RKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHT 274 R+ ++ W + R ++ ++K+ A V L+ A + +F Sbjct: 212 RQGELLEATWDNLHANERYLFL--PDTKNGTARSVPLSHIALDAILSVERTDDTRIFP-- 267 Query: 275 KAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVL 334 K W A R A IEDF FHDLRH S L + +P+ L Sbjct: 268 ---------------VSAFAVKNYWEKALRLAAIEDFHFHDLRHEATSRLARK-LPMHDL 311 Query: 335 QEMGGWESIEMVRRYAHLAPNHLTEHAR 362 ++ G +S M+ RY H P L Sbjct: 312 MKVTGHKSSAMLARYYHPVPADLAAALD 339 >UniRef50_Q1RJE3 Integrase n=9 Tax=Rickettsia RepID=Q1RJE3_RICBR Length = 388 Score = 220 bits (561), Expect = 7e-56, Method: Composition-based stats. Identities = 70/352 (19%), Positives = 137/352 (38%), Gaps = 56/352 (15%) Query: 33 QAQELHDKRKAELWRV-----EKLGDLPDVTFEEACLRWLEEKAD--KKSLDSDKSRIEF 85 A+ + K ++ + EK + TF+E R+L+E + K + ++ Sbjct: 76 DARLKASELKGKIAQGYNPIEEKARLSKEPTFKEFYDRYLDEYSKINNKRWKDYAASVDR 135 Query: 86 WLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQT 145 + +H ++ I +A I +++ Sbjct: 136 YAKHLYNRKISTIQKADIQELFNKLTKTGKYG---------------------------- 167 Query: 146 KAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNK-RVRWLEKEEAKRLIDECPEP--- 201 + L ++ + A +W+ L PVI I + + R R+L +EE R E Sbjct: 168 ANRFLEVLSPVFSKAI-EWELLTVNPVIGIKKHKEQSRDRYLTREEIPRFFTAISEEQNQ 226 Query: 202 -LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLR 260 +K AL T +RK N++ + W+QI + ++ ++K+ + L D A ++L+ Sbjct: 227 VMKDFFLIALYTSVRKDNVLTMRWEQISFADKQLYL--PDTKNGDPHRLPLLDQAVEILK 284 Query: 261 DQIGK-HHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHT 319 + + WVF + + K +W C++AGIE+ R HDLR T Sbjct: 285 ARKEQSDSIWVFPSE-----------TSSSGHLQEPKKAWKRICKKAGIENLRIHDLRRT 333 Query: 320 WASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARK-IDDIFGD 370 SW+ +G V+ ++ Y LA + E+ ++ I+++ Sbjct: 334 IPSWMAMTGANQYVIGQLLNHRDPRSTAVYTRLATDTAREYMQRAINEMIST 385 >UniRef50_A4A4J3 Integrase n=3 Tax=Gammaproteobacteria RepID=A4A4J3_9GAMM Length = 377 Score = 220 bits (561), Expect = 8e-56, Method: Composition-based stats. Identities = 80/388 (20%), Positives = 157/388 (40%), Gaps = 52/388 (13%) Query: 2 SLFRRN--EIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTF 59 L++R IW+ + G R+ ES GT + +A+ +R E+ + G + +F Sbjct: 7 GLYKRGTQGIWHIDKCVRGYGRLHESTGTSELEEAERYLIRRLEEMRKANVYGIRVERSF 66 Query: 60 EEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIW 119 +A ++L + K+S+ ++ H + L+ + + + S + Sbjct: 67 RQAATKFLLDYQHKRSIGRYAQSLKILDPHVGDLPLRRVHQGTLESFIRH---------- 116 Query: 120 KQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWK------WLEKAPVI 173 + + T + LA+++ IL A R W+ WLE AP++ Sbjct: 117 ----------------RRKQGMRANTINRDLAVVRRILTLAARLWRDDSGLTWLETAPLL 160 Query: 174 KIPAVRNKRVRW-LEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQ-ID--- 228 ++ + R + L +E RL PE L+ + F + TG R+ ++ L W + Sbjct: 161 QLLDCDDARKPYPLSWDEQARLFARLPEHLREMALFKVNTGTREQEVVCLRWDWEVSIPE 220 Query: 229 MQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAV 288 ++ V V K+ V +N A V+ Q G++ ++VF ++K Sbjct: 221 LKTSVFVVPGGGVKNGEDRLVVMNAEARAVINRQRGRNPEYVFTYSKG------------ 268 Query: 289 RKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRR 348 + + + +W A G+ R HDL+HT+ L GV Q + G ++ ++ Sbjct: 269 QPVDRINTKAWRRAREEVGLPQARVHDLKHTFGRRLRAKGVSHETRQVLLGHKNGQITTH 328 Query: 349 YAHLAPNHLTEHARKIDDIFGDNVPNMS 376 Y+ L + K+ G + P ++ Sbjct: 329 YSAAEIGELIDAVEKVS-WSGSSAPTLT 355 >UniRef50_A5VJF0 Phage integrase family protein n=4 Tax=Lactobacillus reuteri RepID=A5VJF0_LACRD Length = 386 Score = 220 bits (560), Expect = 9e-56, Method: Composition-based stats. Identities = 62/398 (15%), Positives = 132/398 (33%), Gaps = 52/398 (13%) Query: 3 LFRRNEIWYASYSL---PGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTF 59 + +R + WY + + G +R E +G ++A + + ++ Sbjct: 5 VRKRGKKWYYRFDIADKDGKRRQYERVGGDSYKEAMHRLRVALELYENTGAVTNTDKIST 64 Query: 60 EEACLRWLEEKADKKSLDSDKSRIEFWL-----EHFEGIRLKDISEAKIYSAVSRMHNRK 114 + W + + + L +L ++ I ++++ + Sbjct: 65 HDYFEFWYDNYVKTNLSKNTQLNYRHVLDKYVQPTLGIYQLSKVTPELIQKTINKIADST 124 Query: 115 TKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIK 174 + ++ T L +IK R A W L ++P Sbjct: 125 EYKPDHSRLHGH------------------TVEIILMVIKEGFRQAVHPWHILTQSPAEY 166 Query: 175 I-------PAVRNKRVRWLEKEEAKRLIDECP--EPLKSVVKFALATGLRKSNIINLEWQ 225 + P + ++ + ++ +L+++ P P + + TG+R+ + LEW Sbjct: 167 VRQPKYNHPKTTREDLKIITLQQFNQLLEQFPLGHPFHLPLLISFYTGMRRGEVAGLEWD 226 Query: 226 QIDMQRRVAWVNPEE---SKSN----------RAIGVALNDTACKVLRDQIGKHHKWVFV 272 + + V + SK++ +A+ D L+ Q ++ Sbjct: 227 NVSLPDAEINVTQQMKQYSKTDVRLGKLKTAASYRTIAIGDQLIHALKVQRRLQNENRLR 286 Query: 273 HTKAAKRADGTSTPAVRKM--RIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVP 330 + K ++ T K K + + G F FH LRHT A+ L+++G Sbjct: 287 YGKNYHESNFVCTKENGKPVTPNSIKYYASTVTKELGFP-FNFHSLRHTHATMLLEAGAS 345 Query: 331 LSVLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDI 367 +Q G I Y HL+ + A +D I Sbjct: 346 AKEVQVRLGHNKIATTLDTYVHLSNKKKHQTANLLDQI 383 >UniRef50_A6G3E1 Phage integrase n=2 Tax=Plesiocystis pacifica SIR-1 RepID=A6G3E1_9DELT Length = 398 Score = 220 bits (560), Expect = 9e-56, Method: Composition-based stats. Identities = 83/398 (20%), Positives = 142/398 (35%), Gaps = 64/398 (16%) Query: 1 MSLFRRN---------EIW--YASYSLPGGKR--IKESLGTKDKRQAQELHDKRKAELWR 47 MS+ +R E W + ++ P G++ I++ + KR A+ + + +L+ Sbjct: 1 MSVRKRKWRDKQGRQHERWMVHIEHTWPDGRKLTIRKVSPVQTKRGAERYERELRKQLFT 60 Query: 48 VEKL--GDLPDVTFEEACLRWL---EEKADKKSLDSDKSRIE-FWLEHFEGIRLKDISEA 101 + T + +L + + + L F RL I E Sbjct: 61 GQWEEGDKQQTPTLQGFVEEFLAYQRTINKPAVIRRKEGILRLHLLPAFGRHRLDKIDER 120 Query: 102 KIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAE 161 I P QT +HL ++ I A+ Sbjct: 121 MIDQY--------------------KVDRLATLTRTGSPFQPQTVNQHLKVLGRIFTVAK 160 Query: 162 RDWKWLEKAPVIKIPAVRNKRVRWLEKEEAKRLIDECPEP---LKSVVKFALATGLRKSN 218 + WK + + P I + R +L+ +E + + E + + A+ TGLR Sbjct: 161 K-WKLVREVPEIVLLKQRKSDFDFLDFDETEAFLTGTAEHLPDWHTYMVVAVRTGLRVGE 219 Query: 219 IINLEW-QQIDMQRRVAWVN--------PEESKSNRAIGVALNDTACKVLRDQIGK-HHK 268 +I L W + ID+QR VN +KS++ + L A L Q + K Sbjct: 220 MIALRWREDIDLQRGRISVNQSWSVENGFTSTKSDKRRELPLTWDARDALEAQRVRVQGK 279 Query: 269 WVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSG 328 VF A + GT + + + H LRHT+AS + G Sbjct: 280 LVFPREGAPTHSAGTV-----------QYAIDKITEALEMRHLHNHVLRHTFASHAVMRG 328 Query: 329 VPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDD 366 VP+ +QE G +SI RYAHL+ + E +++ Sbjct: 329 VPMRQVQEWLGHQSITTTMRYAHLSRGYGDELIKRLAP 366 >UniRef50_Q0F389 Site-specific recombinase, phage integrase family protein n=3 Tax=Proteobacteria RepID=Q0F389_9PROT Length = 331 Score = 220 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 78/378 (20%), Positives = 134/378 (35%), Gaps = 63/378 (16%) Query: 1 MSLFRRN-----EIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDL- 54 M++ +R + G ++ +R AQ + K +L R + + Sbjct: 1 MAIQKRKWKNGRTTYRVQVYHRG--KVVADATFDFRRDAQLFEAEVKTKLQRGDFVDTRL 58 Query: 55 -PDVTFEEACLRWLEE-KADKKSLDSDKSRIEFW-LEHFEGIRLKDISEAKIYSAVSRMH 111 F EA R+ E KK + SR+ + L I I Sbjct: 59 AERTLFGEALERYAENIVPRKKGARQEMSRVRTLSRSSLVRLPLSKIRTPDIIKYRD--- 115 Query: 112 NRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLE-KA 170 K V + LA+I + A RDW Sbjct: 116 ------------------------SRLKEVGPNSVRLELAVISHLFTVASRDWGMNYLSN 151 Query: 171 PVIK--IPAVRN-KRVRWLEKEEAKRLIDECPEP---LKSVVKFALATGLRKSNIINLEW 224 PV + +P+V+ R R L+ E +L+ C E + +V FAL T +R++ I +L W Sbjct: 152 PVARGVMPSVKQTARDRRLQPGEEDQLMQACKEYGGVIGDIVMFALETAMRRAEIASLRW 211 Query: 225 QQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTS 284 + I +A ++ ++K+ V L+ A +++ + Sbjct: 212 EDI--HGNIARLH--DTKNGERRDVPLSSRAREIIHRRAKVRS--------------LND 253 Query: 285 TPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIE 344 ++ C+ AGI D RFHDLRH S L + G+ + + G ++++ Sbjct: 254 KRVFGIAPNGISQAFSRVCKHAGIVDLRFHDLRHEATSRLFERGLNPMQVASITGHKTLQ 313 Query: 345 MVRRYAHLAPNHLTEHAR 362 M++RY HL L Sbjct: 314 MLKRYTHLRAEDLVALLD 331 >UniRef50_UPI0001C35B62 integrase family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35B62 Length = 406 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 73/409 (17%), Positives = 139/409 (33%), Gaps = 74/409 (18%) Query: 2 SLFRRNEI-WYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFE 60 +++R + + A Y GKR + + +A+ + E R + PD+T + Sbjct: 13 GIYQRKDGLYSARYYSKNGKRKER--YFETLPEAKNWLADARYE-ERHNLIVTSPDMTVD 69 Query: 61 EACLRWLEEKA---DKKSLDSDKSRIEF-WLEHFEGIRLKDISEAKIYSAVSRMHNRKTK 116 + W+E + + + R ++ + + D+ + ++RM Sbjct: 70 KWFTYWIENIVCDLAPNTKRNYQERYKWNIQPVIGAMCIADVKPMHCKAVLNRMET---- 125 Query: 117 EIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIP 176 + T + + +L++A + + K P+ + Sbjct: 126 -----------------------TYAGSTIRQAYITMGTMLKSAVMN-DIIAKHPMNGVR 161 Query: 177 AVRNKR----VRWLEKEEAKRLIDEC-PEPLKSVVKFALATGLRKSNIINLEWQQIDMQR 231 + R +++L EE ++ ++ L TGLR + +I L W ID + Sbjct: 162 YTKPVRAVDDIKYLTVEEQEKFLEAAARSHNYRQYALLLETGLRTAEMIGLTWDAIDWKN 221 Query: 232 RVAWVNPEE-------------SKSNRA-IGVALNDTACKVLRDQIGKHH---------- 267 R VN K+ ++ + L D A +L+ + Sbjct: 222 RTLTVNKSLEYRHSQGYWRAGPPKTQKSYRTIPLTDKAYSILKSCYDEKDSRKSSETLSQ 281 Query: 268 --KWVFVHTKAAK------RADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHT 319 +++ T K T C AGI+ F H LRHT Sbjct: 282 VLEYIDSRTGENKCLIMRDLVFVNWRTGEPAKNSSYDTHLYKLCDEAGIKRFCMHALRHT 341 Query: 320 WASWLIQSGVPLSVLQEMGGWESIEMVR-RYAHLAPNHLTEHARKIDDI 367 +A+ I+ GV VLQ++ G SI+ RY H+ L R+ Sbjct: 342 YATRAIERGVQPKVLQQLLGHASIKTTMDRYVHVTDESLVNAIRQFQQA 390 >UniRef50_A7VEW1 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=A7VEW1_9CLOT Length = 379 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 68/392 (17%), Positives = 134/392 (34%), Gaps = 57/392 (14%) Query: 7 NEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRW 66 N ++ A ++ G+R +S K ++ ++ + L + D+ + W Sbjct: 19 NGLYVARFTDRFGRR--KSKRFKKLQECRQWIADA-TYIDEHSDLENATDMLVDAWFEYW 75 Query: 67 LEEKADKKSLDSDKSRIEF----WLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQK 122 ++ K ++ ++ E E L ++ S M + Sbjct: 76 IDLKKKTVRPNTVRNYSERYERNIKNVIENKLLTEVKPIHCQKIFSDMADE--------- 126 Query: 123 VQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPA----V 178 T T + + +L A ++ + + P K Sbjct: 127 -----------------GYKTTTIYQTRIALYNMLEFA-KENEVIITNPCKKSVKSDIGK 168 Query: 179 RNKRVRWLEKEEAKRLIDECPEPLKSV-VKFALATGLRKSNIINLEWQQIDMQRRVAWVN 237 + + L ++ +R + +FAL TGLR ++ L+W+ I+ +R+ + Sbjct: 169 PSDKKEALTIDDQRRFLAAAKGQSYEYQYRFALQTGLRTGELVGLKWEDINFERKTLTIE 228 Query: 238 ---------------PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADG 282 P +SKS + L D A +L+ Q K+ K + V K Sbjct: 229 RSMEFRYKVGEWRVGPPKSKSG-YRTIPLTDEAICILKAQKEKNRK-IKVIDKEWADTVF 286 Query: 283 TSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWES 342 T+ C +AGI+ F H LRHT+A+ I+ G+ LQ++ G + Sbjct: 287 LCRKGQPVKNSTYDTALFKICDKAGIKRFSMHVLRHTFATRCIEGGMMPKTLQKILGHSN 346 Query: 343 IEMVRR-YAHLAPNHLTEHARKIDDIFGDNVP 373 I + Y H+ + + + V Sbjct: 347 IGITMNLYVHITEEEKQKEIDLVAEALKAGVA 378 >UniRef50_Q3A6E0 Site-specific recombinase/integrase n=3 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A6E0_PELCD Length = 482 Score = 218 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 74/387 (19%), Positives = 148/387 (38%), Gaps = 62/387 (16%) Query: 7 NEIWYASYSLPGGKRIKESLGTKD--KRQAQELHDKRKAELWRVEKL-----GDLPDVTF 59 N+ W Y L G K++ A+++ ++ + L E++ TF Sbjct: 135 NKRWLFRYRLYGRKKVVAIGPYPSIEPPLAKQMANEMQRNLALGERVVSPRAQQKQQKTF 194 Query: 60 EEACLRWLEE-KADKKSLDSDKSRI-EFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKE 117 E ++LE K KKS D +++ + + + L ++ +I ++++ R Sbjct: 195 GEFARKYLEHAKQTKKSWKDDYNKLTNQIIPKWGEVPLTCLTPKEIQGYLNQVKART--- 251 Query: 118 IWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLE-KAPVIKIP 176 S +H A++ + A + + K P+ + Sbjct: 252 ------------------------SGTNANRHYAVLNVLYNLAVKWGEIDPWKNPMPGVS 287 Query: 177 AVRN--KRVRWLEKEEAKRLIDECPE----PLKSVVKFALATGLRKSNIINLEWQQIDMQ 230 R+ R R+L EE KR + E ++ L TG R ++ +W+ + M+ Sbjct: 288 KFRDNPGRTRYLSMEECKRFLAALEEAPGQLAACALRLLLFTGCRAGEVLKSKWEDVSME 347 Query: 231 RRVAWVNPEESKSNRAIGVALNDTACKV---LRDQIGKHHKWVFVHTKAAKRADGTSTPA 287 R + E+K+ ++ V LN + L+D + ++F + K Sbjct: 348 GRTMLL--PETKNGKSRVVHLNSLSLAEIEKLKDFRNPSNPYLFPGSSEDKPLG------ 399 Query: 288 VRKMRIDSKTSWLSACRRAGI--EDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEM 345 + ++ A + AG+ D H LRHT AS L G L ++ G S++M Sbjct: 400 ------TVRKTFEHALKLAGLQGTDVVIHTLRHTHASLLANLGESLETIKVSLGHSSVKM 453 Query: 346 VRRYAHLAPNHLTEHARKIDDIFGDNV 372 RYAH++ + + + + + + + Sbjct: 454 TERYAHISGSKTKDASDHLAEQLKEVM 480 >UniRef50_B2TH09 Integrase family protein n=4 Tax=Proteobacteria RepID=B2TH09_BURPP Length = 380 Score = 218 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 71/323 (21%), Positives = 128/323 (39%), Gaps = 50/323 (15%) Query: 53 DLPDVTFEEACLRWLEE-KADKKSLDSDKSRIEFWLEHF-EGIRLKDISEAKIYSAVSRM 110 + ++ +A ++ E +KK +K R + F + + + I + Sbjct: 7 EGGSLSIRQALKKYNERISVNKKGCKQEKYRASTICKTFLGKVPISQATTVDIANYRD-- 64 Query: 111 HNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKA 170 + + +PVS T LA++ + A +W Sbjct: 65 -----------------IRLATISRTTNRPVSPNTVRLELALLSDLFNIARIEWGVAVDN 107 Query: 171 PV--IKIPAVRNKRVRWLEKEEAKRLIDECPEP----LKSVVKFALATGLRKSNIINLEW 224 PV ++ P + R R L E +R++ + SVV A+ T +R+ I+ L W Sbjct: 108 PVMRVRKPKIPPGRERRLTWGEERRILRGASQHRNEQFYSVVVLAIETAMRQGEILGLTW 167 Query: 225 QQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTS 284 + ID++ R+A + +K+ V L+ A L K VF +T A Sbjct: 168 ENIDLRVRIAHLPA--TKNGTKRDVPLSLRAVDALTRLGVKTEGPVFNYTSAG------- 218 Query: 285 TPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGV-PLSVLQEMGGWESI 343 K++W + +R G+ D FHDLRH S L + G + + + G +S+ Sbjct: 219 ----------FKSAWRTLLQRIGMMDLHFHDLRHEAISRLFELGTLDMMEVATISGHKSM 268 Query: 344 EMVRRYAHLAPNHLTEHARKIDD 366 +M++RY HL ++L K+D Sbjct: 269 QMLKRYTHLKASNL---VAKLDG 288 >UniRef50_UPI0001694281 DNA integration/recombination/invertion protein n=8 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001694281 Length = 413 Score = 218 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 72/419 (17%), Positives = 147/419 (35%), Gaps = 68/419 (16%) Query: 2 SLFRRN-EIWYASYSL---PGG--KRIKESLGTKD----------KRQAQELHDKRKAEL 45 S+ +R W + L G R++ + +D + ++ K K E+ Sbjct: 5 SIEKRGENTWRLTIDLGYNQDGSRNRLRRKVVVEDKALLKTKKKLREYLEDELHKFKIEV 64 Query: 46 WRVEKLGDLPDVTFEEACL-RWLEEKADKK------SLDSDKSRIE-FWLEHFEGIRLKD 97 E + +T + W + A + + IE + F L+D Sbjct: 65 EAGEYIAP-QKMTLRQFIENEWEPKYASNTENLSPLTYQTYMHFIENRIMPVFGHKNLED 123 Query: 98 ISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAIL 157 I I + ++ + + ++ + +S T ++K I Sbjct: 124 IRTLHIVTFINDLSKPEARK-----------------DGKSGKLSPGTIQYIHRVLKNIF 166 Query: 158 RAAERDWKWLEKAPVIKI--PAVRNKRVRWLEKEEAKRLIDEC---PEPLKSVVKFALAT 212 A +W+ ++ P++ + P V + +++EA+ I P + ++ ++ Sbjct: 167 NRA-TEWQLIKTNPIVGVKKPKVEQTEFDFYDEDEAREAIAALSKEPRRWRLLILGSMVG 225 Query: 213 GLRKSNIINLEWQQIDMQRRVAWVNP--------------EESKSNRAIGVALNDTACKV 258 G R+ ++ LEW +D +N +SKS++ V + D Sbjct: 226 GFRRGELLALEWSNVDFDNMTLSINKSISLTKDGRAVEKAPKSKSSK-RIVDMPDWYMDE 284 Query: 259 LRDQ---IGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKT-SWLSACRRAGIEDFRFH 314 L+ K V + R + T W +R ++ RFH Sbjct: 285 LKVHEYEWKKEKLSVGDKWRGGDRQYVFHAGFGKPFHHTYPTEWWNGFTKRHNLKRVRFH 344 Query: 315 DLRHTWASWLIQSGVPLSVLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIFGDNV 372 DLRH+ A+ LI++G + +Q+ G + YAH+ + A K + +N+ Sbjct: 345 DLRHSSATLLIEAGASMKAVQQRLGHSKHQTTADIYAHVTKKVSRDTAEKFNKFAPNNI 403 >UniRef50_C6E4Z2 Integrase family protein n=2 Tax=Geobacter RepID=C6E4Z2_GEOSM Length = 334 Score = 218 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 71/385 (18%), Positives = 143/385 (37%), Gaps = 72/385 (18%) Query: 1 MSLFRRNEI--WYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPD-- 56 M++++R +Y ++++ G R+ S G K++A+ K + L Sbjct: 1 MAVYKRGGKGVFYMNFTV-DGVRVSRSTGKFTKKEAKLFEAVEKKRMMVDGALSPRERAA 59 Query: 57 -VTFEEACLR-WLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRK 114 + A + + E D K D + E + + + I E I V + Sbjct: 60 RMLLSVAIQKVYDERWKDNKDGDKSQRIAERVMYLIGDVPISKIDEETIKLLVRLL---- 115 Query: 115 TKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIK 174 E V T ++LA +K +LR + W+ + + Sbjct: 116 ----------------------EGSGVKGATVNRYLATVKTLLRYHRQPWEHI------Q 147 Query: 175 IPAVRNKRVRWLEKEEAKRLIDECP-----------EPLKSVVKFALATGLRKSNIINLE 223 + R+R + +EE +++ + +V+ TG R S ++NL Sbjct: 148 LKKESKGRIRVISREEEAMVVNLLRDTDHGSRRLYFPEVADLVEVLADTGCRLSEVLNLG 207 Query: 224 WQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGT 283 ++ I+ + V +K ++ + + + +L+ + + F Sbjct: 208 YEDINFDTNLITVWI--NKGDKPRSIPMTNRVGGILQARQVGNPLKPFT----------- 254 Query: 284 STPAVRKMRIDSKTSWLSACRRAGI---EDFRFHDLRHTWASWLIQSGVPLSVLQEMGGW 340 +T+W ++ G+ +F H LRHT A+ LI G+ L ++E G Sbjct: 255 ------IDIDKVETAWKWVRKKMGLAGDPEFVPHALRHTTATRLIDGGIDLYTVKEWLGH 308 Query: 341 ESIEMVRRYAHLAPNHLTEHARKID 365 +I++ RYAHL P+ L A ++ Sbjct: 309 STIQVTERYAHLNPDKLVHAANVLE 333 >UniRef50_B3WDC1 Integrase n=3 Tax=root RepID=B3WDC1_LACCB Length = 394 Score = 218 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 65/401 (16%), Positives = 133/401 (33%), Gaps = 68/401 (16%) Query: 11 YASYSLPGGKRIK-ESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRW--- 66 +A GK IK G ++ AQ+ +AE+ + + + +W Sbjct: 21 FAGVDPQTGKEIKIHRRGFPTEKIAQQEATLAEAEIIKGHSHYQTERILMADYLNQWITK 80 Query: 67 LEEKADKKSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQA 125 L+ + S+ + ++ + + IRL + + +S + N Sbjct: 81 LKVNVKEGSMIIYRYNLKKYIIPKIGDIRLAKYTLKEHQEFISSLFND------------ 128 Query: 126 AIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIP-----AVRN 180 +S T + L+ A ++ K P + + + Sbjct: 129 --------------GLSLNTVKLINGTLHNALKKAV-AIGYITKNPTVGVEFSAYAKDNS 173 Query: 181 KRVRWLEKEEAKRLIDECPEP----LKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWV 236 K++ + K++ I+ E S + GLR + L W ID + V Sbjct: 174 KKLHFWTKDQVGSFIEAAEEDKEPMWLSFFVTLIDCGLRVGEAMALRWSDIDFSKNTLSV 233 Query: 237 NPEE-----------------SKS-NRAIGVALNDTACKVLRDQIGKH------HKWVFV 272 N K+ + + +L+ Q +H + F Sbjct: 234 NATRIYRAETGSNAGKIALDRPKTLSSKRTEYMTARVNDLLQQQYERHFSHGNVQGFRFS 293 Query: 273 HTKAAKRADGTSTPAVRKMRIDSKT---SWLSACRRAGIEDFRFHDLRHTWASWLIQSGV 329 + S+ A + S+ ++ RAG+ R HDLRHT A + ++G+ Sbjct: 294 TSHNNDFVFTYSSDAKFGQPLRSRATTGAFNRITNRAGLPHIRIHDLRHTHAVLMREAGL 353 Query: 330 PLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIFGD 370 L +++ G + I + YA ++P E+ ++ + Sbjct: 354 SLDDIKDDLGHKDISTTQIYAEISPAKKKENHQQFEKYLNQ 394 >UniRef50_C4XJH7 Putative site-specific recombinase n=3 Tax=Desulfovibrio magneticus RS-1 RepID=C4XJH7_DESMR Length = 374 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 69/406 (16%), Positives = 135/406 (33%), Gaps = 70/406 (17%) Query: 1 MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELH---------------------- 38 M ++ R+ W Y GKR +S G ++ AQ Sbjct: 1 MGVYDRDGRWMVFYHDETGKRRDKSFGRGEEAYAQAEAFNKAVSDAKKLCTALPLPPTDL 60 Query: 39 --------DKRKAELWRVEK-LGDLPDVTFEEACLRWLEE-KADKKSLDSDKSRIEFWLE 88 K E+ EK + +TF E ++L K ++ ++ K + Sbjct: 61 ISSPAPAPVKMIEEITLPEKTIQSGQGMTFRELAGKYLAHLKVSGRTENNTKKLAKMIDN 120 Query: 89 HFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAK 148 F + V+ M + + I+ +E + +P S T + Sbjct: 121 QF--------NPIIGDRVVNSMT-------YIDDMVPFIQFFQETNGKQNRPRSQPTVNR 165 Query: 149 HLAMIKAILRAAERDWKWLEKAPVIKIPAVRNK-RVRWLEKEEAKRLIDECPEPLKSVVK 207 + + AI P+ R K R L ++ KR++D ++ ++ Sbjct: 166 YGDYVNAIFNFGVTT-GLTTVNPMKGRKKSREKPRDVQLTVDDVKRIMDHAEPHVRWAME 224 Query: 208 FALATGLRKSN--IINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGK 265 + G R ++ L+W ID + +A + SK+ V ++ T +++ + Sbjct: 225 VCFSLGTRPGESELLALKWDHIDFDKGIAKIYA--SKTRTYRVVPISPTLLGKMKEVKTE 282 Query: 266 -HHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIED-FRFHDLRHTWASW 323 +V + + + AC RAGI R +DLRH +A+ Sbjct: 283 SQSGYVIEWR--------------GQPIGMIRKGFRRACERAGITYPVRMYDLRHLFATT 328 Query: 324 LIQSGVPLSVLQEMGGWESIE-MVRRYAHLAPNHLTEHARKIDDIF 368 ++ G L+ + ++ G I Y H + ++ Sbjct: 329 MLSKGADLAAVSKLLGHSMISTTTSHYYHCLEGEKERAVSLLPELM 374 >UniRef50_C6XR20 Integrase family protein n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XR20_HIRBI Length = 402 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 78/356 (21%), Positives = 144/356 (40%), Gaps = 41/356 (11%) Query: 31 KRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRWL---EEKADKKSLDSDKSRIEFWL 87 + QA L + K + +K ++ + T + + +++ ++S + + Sbjct: 73 RSQATLLLLQLKQGIDPRKKTNEI-NYTIASYFEVFCGQTNGRKKPRTIKLEESLFKRHI 131 Query: 88 -EHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTK 146 H ++LK+++ I + +S++ N + K K + P T Sbjct: 132 SPHLGKVKLKELNTTHISNFMSKVANPDKIIVEKTKPRGKAVVSGGKP----------TA 181 Query: 147 AKHLAMIKAILRAAERDWKWLEKAPVIKIPAVR-NKRVRWLEKEEAKRLIDECPE----- 200 + ++ A+L A + L+K P + R K+ R+L + E +RL E + Sbjct: 182 NRAHDILSAMLNHAVKA-GLLDKNPAKNVAKFRTEKKERFLTEVEIQRLGQELRQAGSDG 240 Query: 201 -PLKSV--VKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACK 257 ++ +K + TG RKS I++L W+ ID QR +A + +SK++ + L Sbjct: 241 TNTYAIEALKVLMFTGARKSEILSLRWEYIDWQRSLANL--PDSKNDMK-SIVLPSVVIS 297 Query: 258 VLRDQIGKH-HKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDL 316 +L + K + WVF G + W A + D R HDL Sbjct: 298 ILNNLPNKGTNGWVFPSNDGNTHFTG------------LQKIWNRIRTNANLRDVRIHDL 345 Query: 317 RHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIFGDNV 372 RHT+AS G L +L + + +RYAHLA + L I + D++ Sbjct: 346 RHTFASVGAAEGKSLYILGKALTHANPATTQRYAHLADDPLRHAVEAISNKIDDSL 401 >UniRef50_A0QET6 TraSA:integrase fusion protein n=1 Tax=Mycobacterium avium 104 RepID=A0QET6_MYCA1 Length = 382 Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats. Identities = 70/394 (17%), Positives = 126/394 (31%), Gaps = 60/394 (15%) Query: 6 RNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLP-DVTFEEACL 64 R W A+Y + S G K AQ D+ A + + + +TF + Sbjct: 25 RGMRWRATYVDDQSREHSRSFGR--KVDAQRWLDEVTAAVVTGQYVDPKAGQITFRDYAE 82 Query: 65 RWLEEKADKKSLDSDKS--RIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQK 122 RW + + + S + +L I + + + V + Sbjct: 83 RWRKMQVQRPSSRAHIETMLRRHAYPTLGDRQLTSILPSDVQAWVKGLQ----------- 131 Query: 123 VQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV--IKIPAVRN 180 ++ T ++ ++++A RD + P K+P V+ Sbjct: 132 ------------------LAPATVGVVHGLVSTVMKSAIRDRRL-AANPCDGTKLPKVQR 172 Query: 181 KRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWV---- 236 ++ L E+ + + E P L+++V A TGLR+ L ++ RV V Sbjct: 173 PQIVPLTTEQVEAVRAELPAELQALVTLAAGTGLRQGECFGLTVDRVRFLERVLTVDRQL 232 Query: 237 --------NPEESKSN-RAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPA 287 K+ + L A + Sbjct: 233 VTVAGQAPTFGPPKTRASNRAIPLPKVV--------ADALAAHLAAFPAEPDGLVFTQQG 284 Query: 288 VRKMRIDSKTSWLSACRRAGIEDFR-FHDLRHTWASWLIQSGVPLSVLQEMGGWES-IEM 345 R W +A + A + FH LRH +AS LI+ G + +Q G S +E Sbjct: 285 KPITRSTFGYRWRAAVKEAKLPHGTGFHALRHYYASLLIRHGESVKTVQARLGHASAVET 344 Query: 346 VRRYAHLAPNHLTEHARKIDDIFGDNVPNMSHSE 379 + Y+HL P+ ID + G + + Sbjct: 345 LDTYSHLWPDSDDRTRDAIDSVLGSTAYRLRTGQ 378 >UniRef50_Q1MNY2 Integrase n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MNY2_LAWIP Length = 383 Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats. Identities = 82/387 (21%), Positives = 150/387 (38%), Gaps = 53/387 (13%) Query: 8 EIWYASYSLPGGKRI------KESLG-TKDKRQAQELHDKRKAELWRVEKL------GDL 54 + +Y Y G K++ +ES G T EL VEK Sbjct: 29 KTFYILYRRCGEKKLIEEPVGRESSGMTAATANNIRGLRAIGKELSNVEKRKKEKEKQQN 88 Query: 55 PDVTFEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRK 114 VT + ++ ++KKSL D SR+++ L ++ I + ++ K Sbjct: 89 QKVTLQTIWDKYQLIYSEKKSLKQDISRVKY-LSDLMHKSPDILTTNDIDTLRKKLTLTK 147 Query: 115 TKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEK-APVI 173 + + +S + L ++K ++ + ++ I Sbjct: 148 SSK-------------------GGASLSPASIKHILVLLKRLINFGIQRNLCIKPQNLYI 188 Query: 174 KIPAVRNKRVRWLEKEEAKRLIDEC----PEPLKSVVKFALATGLRKSNIINLEWQQIDM 229 +P V N++ L K + K L+ + + ++ AL TG+RKS ++ L+W D Sbjct: 189 DMPKVDNQKTEILSKNQLKNLLLALDAEPNQSDVAFIRLALVTGMRKSALLALKWSDCDF 248 Query: 230 QRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVR 289 + + ++ +K + + +N++A +L + ++F KR Sbjct: 249 ENNIITLSGNYAKKGKTDYIPMNNSAKSILLSIPKGNSDFIFATRNGTKRTTYN------ 302 Query: 290 KMRIDSKTSWLSACRRAGIE-DFRF-HDLRHTWASWLIQSG-VPLSVLQEMGGWESIEMV 346 + +A + DFR H LRH +AS L SG V L +Q + E+ M Sbjct: 303 ------QRLIKRIKEKAKLPKDFRPLHGLRHNFASRLASSGKVDLYTIQRLLTHETPAMT 356 Query: 347 RRYAHLAPNHLTEHARKIDDIFGDNVP 373 +RYAHL + L + A IDD F + + Sbjct: 357 QRYAHLHNDALKKAAAIIDDEFTETLS 383 >UniRef50_C4ZDW8 Integrase n=34 Tax=Bacteria RepID=C4ZDW8_EUBR3 Length = 432 Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats. Identities = 75/444 (16%), Positives = 151/444 (34%), Gaps = 92/444 (20%) Query: 2 SLFRRNEIWYASYSLPG--GKRIKESL-GTKDKRQAQELHDKRKAELWRVEKLGDLPDVT 58 S+ ++ + WY + + G +++ GT++K + ++L + + + ++T Sbjct: 5 SVRKKGKKWYYRFYVEDASGNLVQKEFAGTENKSETEKLLRQAMEDYEAKRFVAKAENIT 64 Query: 59 FEEACLRWLEEKADKKSLDS-----DKSRIEFWLEH-FEGIRLKDISEAKIYSAVSRMHN 112 E W EE+ +L + I +H +LK ++ + + + Sbjct: 65 LGELLDLWAEEELKTGTLSNGTVGNYLQTIGRIKQHPISKRKLKTVTSVHLQEFMDLLS- 123 Query: 113 RKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPV 172 G + + K S A+++ R A +++ P+ Sbjct: 124 ----------------FGGTVGDFISKGYSIDYVRSFSAVLQQSFRFAVFPKQFITFNPM 167 Query: 173 IKI----PAV-----------RNKRVRWLEKEEAKRLIDECPEPLKSVVK---FALATGL 214 + +V+ L E ++LI++ + + A TGL Sbjct: 168 QYVVMRHKKEETDLFADETATDRDKVKPLSFEMYRKLIEQLGKRSGDAILPVQIAYFTGL 227 Query: 215 RKSNIINLEWQQIDMQRRVAWVNPEE-------------SKSNRAIGVALNDTACKVLRD 261 R + L WQ I+++ + V +K + V DT +LR+ Sbjct: 228 RLGEVAGLTWQDINLEEQYLTVRRSIRYNGATHKHEIGPTKWKKIRVVDFGDTLADILRN 287 Query: 262 QIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKT------------------------ 297 + HK F + + +R ++ + Sbjct: 288 AKKEQHKNRFQYGELYQRNFYREVMEKNRVHYEYYHLGMTENVPEDYTEIFFVCLREDGC 347 Query: 298 -----SWLSACRRAG-----IEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVR 347 + +ACR AG +E F FH LRHT+ + L+ +G +QE+ G + Sbjct: 348 LELPATIETACRTAGRKVPELEGFHFHTLRHTYTTNLLSNGAQPKDVQELLGHSDVSTTM 407 Query: 348 -RYAHLAPNHLTEHARKIDDIFGD 370 YAH AR +D + G+ Sbjct: 408 NVYAHATREAKRTSARLLDKVAGN 431 >UniRef50_P96629 ICEBs1 integrase n=1 Tax=Bacillus subtilis RepID=INT_BACSU Length = 368 Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats. Identities = 71/397 (17%), Positives = 133/397 (33%), Gaps = 58/397 (14%) Query: 1 MSLFR-RNEIWYAS----YSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLP 55 MS+ + N + + G+RI+ +++A EL K + E Sbjct: 1 MSVKKLENGQYQVDVSFGFDPITGERIRTRPVASTRKEALELEAKLRREFQEERARKSRS 60 Query: 56 DVTFEEACLRWL---EEKADKKSLDSDKSRI-EFWLEHFEGIRLKDISEAKIYSAVSRMH 111 V+F +L E + + K I + ++F ++ I+ +I + Sbjct: 61 -VSFPTLISIYLASCEIDSKPNYYQNQKYIINKHISDYFLKSDIQKITHREITDFRKHLM 119 Query: 112 NRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAP 171 +S ++ + + I A + + L++ P Sbjct: 120 E--------------------------TGLSNKSVNNIMTSLSKIFDTAVHE-EILKRNP 152 Query: 172 VIKIPAVR--NKRVRWLEKEEAKRLIDECPEP---LKSVVKFALATGLRKSNIINLEWQQ 226 + + K++++ EE K+ I P+ K+ A TGLR ++ L+W+ Sbjct: 153 CDNVKRLPLTRKKMKFWRPEEFKKFISLIPQDQLLFKTFYTVAFLTGLRCGEMLALQWKD 212 Query: 227 ID-------------MQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVH 273 ID V ++K+ V++N K+L + Sbjct: 213 IDKILLEIDVHKSCTWLDGQFVVTTPKTKN-SIRRVSINKKLLKLLERWKEAQEELFNEL 271 Query: 274 TKAAKRADGTSTPAVRKMRID-SKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLS 332 R D C+ + + R HD RH+ + LI G Sbjct: 272 GIRHSHDTYIFQYKDTPSRKDIFSRKIKYFCKDSDLTPIRLHDFRHSHVALLIHQGEDYI 331 Query: 333 VLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIF 368 ++E G S++ Y HL PN E A K+DD+ Sbjct: 332 TIKERLGHGSVKTTIDVYGHLYPNKQKEMADKLDDLL 368 >UniRef50_C7HXJ3 Integrase family protein n=2 Tax=Thiomonas intermedia K12 RepID=C7HXJ3_THIIN Length = 329 Score = 218 bits (555), Expect = 4e-55, Method: Composition-based stats. Identities = 72/350 (20%), Positives = 127/350 (36%), Gaps = 43/350 (12%) Query: 25 SLGTKDKRQAQELHDKRKAELWRVEK---LGDLPDVTFEEACLRWLEEKADKKSLDSDKS 81 S K A+ + EL R D T + R+ K S K+ Sbjct: 5 SRTFDLKADAEAWARDVERELQRGNAAVLRDDAGKTTLAQVAERYAATVLPGKRAHSGKT 64 Query: 82 RIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPV 141 ++ F + L I + + + + Sbjct: 65 YLQAASSRFGPLFLSAIRAVDVAAWRDELL--------------------------AGGL 98 Query: 142 STQTKAKHLAMIKAILRAAERDWKWLEK--APV--IKIPAVRNKRVRWLEKEEAKRLIDE 197 S Q+ HL + + AE++ PV I+ PA R R L E L+ Sbjct: 99 SAQSVIHHLNALSGLFSFAEKELSITLPAGNPVRGIRKPAKPRGRDRRLTAGELDYLLRA 158 Query: 198 CPEPLKSV------VKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVAL 251 + + A+ + +R ++ LEW +ID+Q+R A + ++K+ + VAL Sbjct: 159 ARAARARIGGLPQVITLAVESSMRLGELLGLEWSRIDLQKRTAHLV--DTKNGESRTVAL 216 Query: 252 NDTACKVLRDQIGKHHKWVF--VHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIE 309 + A L+ + VF + + ++ + RK+ T+ A + Sbjct: 217 SSAAVATLQSLPRRIDGRVFGWAASDSFEKTWTRCKASARKLYEADCTAQGIRPDPAFLA 276 Query: 310 DFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTE 359 D RFHDLRH S L + G+ + + M G +S+ M++RY H+ L + Sbjct: 277 DLRFHDLRHEATSRLFEKGLGVMEVASMTGHKSLSMLKRYTHIEAEKLAK 326 >UniRef50_Q2LQY7 Integrase family protein n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LQY7_SYNAS Length = 421 Score = 218 bits (555), Expect = 4e-55, Method: Composition-based stats. Identities = 66/362 (18%), Positives = 138/362 (38%), Gaps = 45/362 (12%) Query: 29 KDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEAC-LRWLEEKADKKSLDSDKSRIEFWL 87 K +E K++ + + +TF + + + A KKS D ++ + W+ Sbjct: 89 KTISDMREKARKQEEAKQAEVEKKEKESITFGKYFKDTYFPDMAHKKSKDVEQFIYDKWI 148 Query: 88 -EHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTK 146 +R+ D+++ + M E + +T Sbjct: 149 CPLIGKLRINDLTDFHLKKIKKNM--------------------------EDSGKAVRTI 182 Query: 147 AKHLAMIKAILRAAERDWKWLEKAPV--IKIPAVRNKRVRWLEKEEAKRLIDECPEPLKS 204 A++ + A +D P +K+P + N++ R+L +EA L+ + Sbjct: 183 HYAFAIVSQVWNRARKDKIVQRDCPTRDVKLPRIDNQKKRFLSPQEANDLLAYLKNKSRQ 242 Query: 205 VVKFA---LATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRD 261 + + A L TG R + L W++I+++ + +KS + V + + + Sbjct: 243 LYELAYLSLYTGARFGELAGLTWRRINLKDG--SIIFRNTKSGKDRTVFMTEGVKALFEA 300 Query: 262 QI-GKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTW 320 GK +F K + ++T + + + FH LRHT Sbjct: 301 MPEGKADDLIFPDRKGKRLFSVSATFDRAIADLGLNKGVVDPRDK-----ITFHSLRHTH 355 Query: 321 ASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIFGDNVPNMSHSEI 380 ASWL+ +G L +++E+ G +M RY+H A + + + ++ +P M+ S+ Sbjct: 356 ASWLVNNGTNLFLVKEILGHADFKMTTRYSHPAADSIRQAMVGLEK----KIPGMAESQT 411 Query: 381 ME 382 + Sbjct: 412 GQ 413 >UniRef50_B2THD3 Site-specific recombinase, phage integrase family n=3 Tax=Clostridium RepID=B2THD3_CLOBB Length = 384 Score = 218 bits (555), Expect = 4e-55, Method: Composition-based stats. Identities = 62/411 (15%), Positives = 139/411 (33%), Gaps = 68/411 (16%) Query: 1 MSLFR--RNEIWYASYS--LPGGKRIK-ESLGTKDKRQAQELHDKRKAELWRVEKLGDLP 55 M+ + W A+ S GK++K G K K+ A+ + + Sbjct: 1 MASYEQLTKYNWKATVSLGYENGKQVKTRKQGFKTKKDAEIWVTDTLGKKHKGYIALTNS 60 Query: 56 DVTFEEACLRWLEEKA----DKKSLDSDKSRIE-FWLEHFEGIRLKDISEAKIYSAVSRM 110 ++ F++ +W E + + RI + +L ++S + I +++ Sbjct: 61 NILFKDYINKWFNEYKVLNVSINTKNDYIYRINAHVVPMIGNYKLSELSTSIIQDFYNKL 120 Query: 111 HNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKA 170 + K + + K ++ L+ A++ K + Sbjct: 121 ISE-------------------------KGMKPVSAKKVYDIVNGCLKYAKKS-KLIYDL 154 Query: 171 PV-IKIPAVRNKRVRWLEKEEAKRLIDECPE-PLKSVVKFALATGLRKSNIINLEWQQID 228 P I+ + + + K+E +D+ + L S V + TGLR + L W ++ Sbjct: 155 PTDIEKQKLVKPEIEFWTKKEIDFFLDKINDLYLYSPVFLDVLTGLRVGELCGLRWCDVN 214 Query: 229 MQRRVAWVNPE----------------ESKSNRAIGVALNDTACKVLRDQI----GKHHK 268 ++ VN + ++ ++ +++ L+ + Sbjct: 215 LESGYIEVNSQVIQDRINKELIFSSILKTSTSH-RNISIPPVLIDFLKAMKEDNNALEND 273 Query: 269 WVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAG--------IEDFRFHDLRHTW 320 +V + + + K K S + ++ FH LRHT Sbjct: 274 FVILSREGLMCNPRNLSMNFTKTVAKYKKSIDDIEKENKEVPKDYMQLKQISFHGLRHTH 333 Query: 321 ASWLIQSGVPLSVLQEMGGWESIEMV-RRYAHLAPNHLTEHARKIDDIFGD 370 A+ LI +G + V+ + G I + Y H+ + + A ++++F Sbjct: 334 ATLLIFNGENIKVVSDRLGHRDISITLNTYTHIMDDMKSNTATLLNNLFKK 384 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.311 0.163 0.491 Lambda K H 0.267 0.0504 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,432,241,411 Number of Sequences: 3077464 Number of extensions: 121730065 Number of successful extensions: 460485 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 7979 Number of HSP's successfully gapped in prelim test: 4647 Number of HSP's that attempted gapping in prelim test: 422882 Number of HSP's gapped (non-prelim): 14779 length of query: 387 length of database: 1,040,396,356 effective HSP length: 130 effective length of query: 257 effective length of database: 640,326,036 effective search space: 164563791252 effective search space used: 164563791252 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.0 bits) S2: 95 (40.9 bits)