 |
| Job Description | P76193 | | Confidence | 4.25% | Date | Thu Jan 5 12:20:20 GMT 2012 |
| Rank | 56 | Aligned Residues | 28 |
| % Identity | 11% | Template | c3bbnD_ |
| PDB info |
PDB header:ribosome | Chain: D: PDB Molecule:ribosomal protein s4; |
PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome.
|
| Resolution | 9.40 Å |
|
|   |   |
205 | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . |
| Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
V | S | S | G | C | I | R | M | N | A | P | D | I | K | A | L | F | S | S | V | R | T | G | T | P | V | K | V |
| Query Conservation |   |
  |
|
|
|
|
|
|
|   |   |   |
|   |   |   |
|
|   |   |
|   |   |
|
|
|
|   |
|
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
|   |
|
|   |
|   |
|
|
|   |   |
|   |   |
|
|   |   |
|   |   |
|
|   |
|   |
|
| Template Sequence |   |
V | N | H | R | H | I | L | V | N | G | R | I | V | D | I | P | S | Y | R | C | K | P | Q | D | T | I | M | A |
| Template Known Secondary structure |   |
 |  | T | T |
|  |  |  | T | T |  |  |
|
|
| T | T |
| B |
|
| T | T |  |  |  |  |  |
| Template Predicted Secondary structure |   |
 |  |
|
|
|  |  |  |
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
111 | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|