17/01/2012 12:35:26 : INFO  : Run start: Tue Jan 17 12:35:26 GMT 2012
17/01/2012 12:35:27 : INFO  : Initialised job
17/01/2012 12:35:27 : INFO  : Renaming log file 'phyre2_20120117_123526.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/733290985eef1a41/phyre_20120117_123526.log'
17/01/2012 12:35:27 : INFO  : Initialised job:
Sequence
>batch____
MSKGTTSQDAPFGTLLGYAPGGVAIYSSDYSSLDPQEYEDDAVFRSYIDDEYMGHKWQCV
EFARRFLFLNYGVVFTDVGMAWEIFSLRFLREVVNDNILPLQAFPNGSPRAPVAGALLIW
DKGGEFKDTGHVAIITQLHGNKVRIAEQNVIHSPLPQGQQWTRELEMVVENGCYTLKDTF
DDTTILGWMIQTEDTEYSLPQPEIAGELLKISGARLENKGQFDGKWLDEKDPLQNAYVQA
NGQVINQDPYHYYTITESAEQELIKATNELHLMYLHATDKVLKDDNLLALFDIPKILWPR
LRLSWQRRRHHMITGRMDFCMDERGLKVYEYNADSASCHTEAGLILERWAEQGYKGNGFN
PAEGLINELAGAWKHSRARPFVHIMQDKDIEENYHAQFMEQALHQAGFETRILRGLDELG
WDAAGQLIDGEGRLVNCVWKTWAWETAFDQIREVSDREFAAVPIRTGHPQNEVRLIDVLL
RPEVLVFEPLWTVIPGNKAILPILWSLFPHHRYLLDTDFTVNDELVKTGYAVKPIAGRCG
SNIDLVSHHEEVLDKTSGKFAEQKNIYQQLWCLPKVDGKYIQVCTFTVGGNYGGTCLRGD
ESLVIKKESDIEPLIVVKK

17/01/2012 12:35:27 : INFO  : Checked sequence
17/01/2012 12:35:27 : INFO  : Finding homologues with PSI-BLAST
17/01/2012 12:35:27 : INFO  : PSI-BLAST 3 iterations
17/01/2012 12:38:11 : INFO  : PSI-BLAST 5 iterations
17/01/2012 12:40:30 : INFO  : Finished PSI-BLAST
17/01/2012 12:40:30 : INFO  : Running Buildali to generate a3m file
17/01/2012 12:48:31 : INFO  : Converting to HMM
17/01/2012 12:48:32 : INFO  : Calibrating HMM
17/01/2012 12:48:48 : INFO  : Searching HMM database
17/01/2012 13:00:41 : INFO  : Finished buildali
17/01/2012 13:00:41 : INFO  : Predicting secondary structure
17/01/2012 13:00:42 : INFO  : Predicted secondary structure (PSI-Pred)
17/01/2012 13:00:42 : INFO  : Predicting Disordered regions
17/01/2012 13:00:42 : INFO  : Predicted Disorder (Disopred)
17/01/2012 13:00:42 : INFO  : Running memsat_svm check
17/01/2012 13:03:58 : INFO  : Globular protein
17/01/2012 13:03:58 : INFO  : Predicted Transmembrane (memsat_svm) ID '733290985eef1a41'
17/01/2012 13:03:58 : INFO  : Initialising fold library search
17/01/2012 13:03:58 : INFO  : Initialised search input
17/01/2012 13:03:58 : INFO  : Building Ensemble models
17/01/2012 13:03:58 : INFO  : Building hh.c2ioaA_.model.1.pdb
17/01/2012 13:03:59 : INFO  : Building c2ioaA_.1.pdb
17/01/2012 13:03:59 : INFO  : Building c2vpmB_.2.pdb
17/01/2012 13:04:00 : INFO  : Building d2io8a3.3.pdb
17/01/2012 13:04:01 : INFO  : Building d2io8a2.4.pdb
17/01/2012 13:04:01 : INFO  : Building d2io8a1.5.pdb
17/01/2012 13:04:01 : INFO  : Building c3n6xA_.6.pdb
17/01/2012 13:04:02 : INFO  : Building c2k3aA_.7.pdb
17/01/2012 13:04:03 : INFO  : Building c2hgsA_.8.pdb
17/01/2012 13:04:03 : INFO  : Building c3kalB_.9.pdb
17/01/2012 13:04:04 : INFO  : Building c1gshA_.10.pdb
17/01/2012 13:04:04 : INFO  : Building c1pk8D_.11.pdb
17/01/2012 13:04:05 : INFO  : Building c2wyoC_.12.pdb
17/01/2012 13:04:06 : INFO  : Building c2qb5B_.13.pdb
17/01/2012 13:04:07 : INFO  : Building c1uc8B_.14.pdb
17/01/2012 13:04:07 : INFO  : Building c2p0aA_.15.pdb
17/01/2012 13:04:08 : INFO  : Building c1i7nA_.16.pdb
17/01/2012 13:04:08 : INFO  : Building c1m0tB_.17.pdb
17/01/2012 13:04:09 : INFO  : Building d1pk8a2.18.pdb
17/01/2012 13:04:10 : INFO  : Building c3t9aA_.19.pdb
17/01/2012 13:04:11 : INFO  : Building c3ln6A_.20.pdb
17/01/2012 13:04:15 : INFO  : Finished HH model building
17/01/2012 13:04:15 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
17/01/2012 13:04:20 : INFO  : html domain output complete ID '733290985eef1a41'
17/01/2012 14:43:41 : INFO  : Run end  : Tue Jan 17 14:43:41 GMT 2012
