05/01/2012 19:40:19 : INFO  : Run start: Thu Jan  5 19:40:18 GMT 2012
05/01/2012 19:40:22 : INFO  : Initialised job
05/01/2012 19:40:23 : INFO  : Renaming log file 'phyre2_20120105_194018.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/731affe7b0c8820e/phyre_20120105_194018.log'
05/01/2012 19:40:23 : INFO  : Initialised job:
Sequence
>batch____
MPSSTHPVERFSFSTALFGMLVLTLGMGLGRFLYTPMLPVMMAEGSFSFSQLSWIASGNY
AGYLAGSLLFSFGAFHQPSRLRPFLLASALASGLLILAMAWLPPFILVLLIRVLAGVASA
GMLIFGSTLIMQHTRHPFVLAALFSGVGIGIALGNEYVLAGLHFDLSSQTLWQGAGALSG
MMLIALTLLMPSKKHAITPMPLAKTEQQIMSWWLLAILYGLAGFGYIIVATYLPLMAKDA
GSPLLTAHLWTLVGLSIVPGCFGWLWAAKRWGALPCLTANLLVQAICVLLTLASDSPLLL
IISSLGFGGTFMGTTSLVMTIARQLSVPGNLNLLGFVTLIYGIGQILGPALTSMLSNGTS
ALASATLCGAAALFIAALISTVQLFKLQVVTS

05/01/2012 19:40:24 : INFO  : Checked sequence
05/01/2012 19:40:26 : INFO  : Finding homologues with PSI-BLAST
05/01/2012 19:40:26 : INFO  : PSI-BLAST 3 iterations
05/01/2012 19:43:48 : INFO  : PSI-BLAST 5 iterations
05/01/2012 19:50:58 : INFO  : Finished PSI-BLAST
05/01/2012 19:50:59 : INFO  : Running Buildali to generate a3m file
05/01/2012 22:40:43 : INFO  : Converting to HMM
05/01/2012 22:41:49 : INFO  : Calibrating HMM
05/01/2012 22:42:06 : INFO  : Searching HMM database
05/01/2012 22:52:11 : INFO  : Finished buildali
05/01/2012 22:52:12 : INFO  : Predicting secondary structure
05/01/2012 22:52:16 : INFO  : Predicted secondary structure (PSI-Pred)
05/01/2012 22:52:17 : INFO  : Predicting Disordered regions
05/01/2012 22:52:18 : INFO  : Predicted Disorder (Disopred)
05/01/2012 22:52:19 : INFO  : Running memsat_svm check
05/01/2012 22:55:36 : INFO  : Running memsat_svm full
05/01/2012 23:03:38 : INFO  : Predicted Transmembrane (memsat_svm) ID '731affe7b0c8820e'
05/01/2012 23:03:39 : INFO  : Initialising fold library search
05/01/2012 23:03:40 : INFO  : Initialised search input
05/01/2012 23:03:42 : INFO  : Building Ensemble models
05/01/2012 23:03:44 : INFO  : Building hh.d1pw4a_.model.1.pdb
05/01/2012 23:03:53 : INFO  : Building hh.d1pv7a_.model.2.pdb
05/01/2012 23:03:59 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/731affe7b0c8820e/hh.d1pv7a_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/731affe7b0c8820e/d1pv7a_.2.pdb
05/01/2012 23:04:01 : INFO  : Building hh.c2gfpA_.model.3.pdb
05/01/2012 23:04:07 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/731affe7b0c8820e/hh.c2gfpA_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/731affe7b0c8820e/c2gfpA_.3.pdb
05/01/2012 23:04:09 : INFO  : Building hh.c3o7pA_.model.4.pdb
05/01/2012 23:04:16 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/731affe7b0c8820e/hh.c3o7pA_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/731affe7b0c8820e/c3o7pA_.4.pdb
05/01/2012 23:04:18 : INFO  : Building d1pw4a_.1.pdb
05/01/2012 23:04:25 : INFO  : Building d1pv7a_.2.pdb
05/01/2012 23:04:32 : INFO  : Building c2gfpA_.3.pdb
05/01/2012 23:04:39 : INFO  : Building c3o7pA_.4.pdb
05/01/2012 23:04:47 : INFO  : Building c2xutC_.5.pdb
05/01/2012 23:04:54 : INFO  : Building d3proc1.6.pdb
05/01/2012 23:05:02 : INFO  : Building c2xq2A_.7.pdb
05/01/2012 23:05:10 : INFO  : Building c3qnqD_.8.pdb
05/01/2012 23:05:18 : INFO  : Building c4proD_.9.pdb
05/01/2012 23:05:25 : INFO  : Building c3hd6A_.10.pdb
05/01/2012 23:05:34 : INFO  : Building d1wija_.11.pdb
05/01/2012 23:05:42 : INFO  : Building d2hoea1.12.pdb
05/01/2012 23:05:48 : INFO  : Building c3rkoN_.13.pdb
05/01/2012 23:05:56 : INFO  : Building d1h3na1.14.pdb
05/01/2012 23:06:03 : INFO  : Building c2kq5A_.15.pdb
05/01/2012 23:06:11 : INFO  : Building c2jlnA_.16.pdb
05/01/2012 23:06:17 : INFO  : Building c2i9zB_.17.pdb
05/01/2012 23:06:25 : INFO  : Building d2i9xa1.18.pdb
05/01/2012 23:06:32 : INFO  : Building d1j4na_.19.pdb
05/01/2012 23:06:39 : INFO  : Building d3cx5c2.20.pdb
05/01/2012 23:07:21 : INFO  : Finished HH model building
05/01/2012 23:07:22 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
05/01/2012 23:08:06 : INFO  : html domain output complete ID '731affe7b0c8820e'
05/01/2012 23:57:07 : INFO  : Run end  : Thu Jan  5 23:57:07 GMT 2012
