120 c1vmaA_ Probab=98.21   E-value=2.1e-05  Score=48.05  Aligned_columns=117  Identities=18%

Q ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCH-----HHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf             557626999779987888999999985575654999806988899-----999999976406678774679999999999
Q batch____        16 RQTWRLCYLLGEAGSGKTWLAQQLQKDKHRRVITLSLVVSWQGKA-----AWIVTDDNAAEQGCRDSAWTRDEMAGQLLH   90 (489)
Q Consensus        16 ~~~~r~v~LtGe~GtGKTtlar~L~~~l~~~~~~~~~i~~~~~~~-----~~ll~~l~~~~~~~~~~~~~l~~~l~~~L~   90 (489)
                      .+.++++.++||.|+||||++-.|+..+...+..+.+++.-..-.     ...+....................+.+.+.
T Consensus        89 ~~~~~vi~~~Gp~G~GKTTt~aklA~~~~~~g~~v~li~~D~~R~gA~eQL~~~a~~~~v~~~~~~~~~~~~~~~~~~~~  168 (294)
T c1vmaA_          89 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA  168 (294)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHH
T ss_conf             78966999980688760248999999999679948999758768647999999997619828974883698999999999


Q ss_pred             HHHHHCCCEEEEEECCHH--HCCHHHHHHHHHHHCCCC------CCEEEEEE
Q ss_conf             998618980899954056--399999999998731587------88069997
Q batch____        91 ALHRTDSRCPLIIIENAH--LNHRRILDDLQRAISLIP------DGQFLLIG  134 (489)
Q Consensus        91 ~~~~~g~r~~llIiDea~--~l~~~vLe~Lr~L~n~~~------~~~iiLig  134 (489)
                      .....+  +-+++||.+-  ..+....+.|+.+.+...      ...++|+.
T Consensus       169 ~~~~~~--~d~IlIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl  218 (294)
T c1vmaA_         169 HALARN--KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVI  218 (294)
T ss_dssp             HHHHTT--CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEE
T ss_pred             HHHHCC--CCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf             999779--98999818889878579999999999996303566885399981