HHsearch 1.5 NAME batch____ FAM FILE query COM //bmm/www/servers/phyre2/HH/hhmake -i /bmm/www/servers/phyre2/public_html/phyre2_output/723d1437a8fe6058/query.a3m -o /bmm/www/servers/phyre2/public_html/phyre2_output/723d1437a8fe6058/query.hhm DATE Sun Jan 15 18:04:04 2012 LENG 70 match states, 70 columns in multiple alignment FILT 110 out of 271 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.4 EVD 0.4253 0.8389 SEQ >ss_pred CCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCEECCCCEEECCHHHHHHHHHHHHHHC >ss_conf 9864343120799999983888788999972000015788898655169803051999999999766319 >Consensus mxtxxxxrllrxxxVxxxxglSrstiyxxxxxxxxxxxGxFPxpiklgxrxvxWxxxeIxxWixxrxxxx >batch____ MNNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRCKLI >UniRef50_D0W4G6(4-61:147) Conserved domain protein n=1 Tax=Neisseria cinerea ATCC 14685 RepID=D0W4G6_NEICI E=9e-08 s/c=1.00 id=28% cov=83% ---------LNLKELMSLTGLKRGMVERLMHKNDPAYDSAFPAPVPVGRNALRWRRADVERWQSGR---- >UniRef50_C6TZS2(252-313:465) Prophage CP4-57 regulatory protein (AlpA) n=1 Tax=Burkholderia pseudomallei 1710a RepID=C6TZS2_BURPS E=1e-08 s/c=0.98 id=25% cov=86% ----PAGPLLDIKQVSERVNISVSMLHEKMKPTSKYYDPKFPPKIQLTERTVRYSQADVDAWI------- >UniRef50_A1W8X8(1-60:81) Phage transcriptional regulator, AlpA n=26 Tax=Proteobacteria RepID=A1W8X8_ACISJ E=7e-07 s/c=0.92 id=21% cov=87% MQATTSKTLINRKKLLAMIPLSERTIFNM------EQRGEFPRRIALTSRNVAWDLAEVEEWIEAR---- >UniRef50_Q0HSR4(6-57:87) Phage transcriptional regulator, AlpA n=1 Tax=Shewanella sp. MR-7 RepID=Q0HSR4_SHESR E=3e-06 s/c=1.02 id=28% cov=76% -------RIVRKHEAKTMLGISHSTLHERINA------GLIPPPFRLSGRAVGWYEYEIQYILAA----- >UniRef50_D1RHR5(2-59:75) AlpA family transcriptional regulator n=1 Tax=Legionella longbeachae D-4968 RepID=D1RHR5_LEGLO E=0.001 s/c=0.77 id=27% cov=73% -------QILFMADIEQIIGVNRITLRRWWLT------GKFPKPVKLNGSLLSWHFEVIQQWI------- >UniRef50_A7JWM9(3-63:68) Possible bacteriophage transcriptional regulator n=1 Tax=Mannheimia haemolytica PHL213 RepID=A7JWM9_PASHA E=1e-09 s/c=1.05 id=24% cov=89% -NTPAKQRFMKIDEVSAVTTLSETQIYRKMKA------GDFPQSISIGANSKVWLESEIQQWIQRKIE-- >UniRef50_B1EIE3(1-60:68) Conserved domain protein n=1 Tax=Escherichia albertii TW07627 RepID=B1EIE3_9ESCH E=5e-08 s/c=0.98 id=23% cov=87% MDTLPKSGYMRPAQVINHFQISESTLWNWVKK------GKFPSPDKLGDGVSRFDVSAIRQWLADR---- >UniRef50_UPI0001AF1863(67-134:301) hypothetical protein SghaA1_28044 n=1 Tax=Streptomyces ghanaensis ATCC 14672 RepID=UPI0001AF1863 E=2e-07 s/c=0.84 id=23% cov=87% ----PGLRLLRIDpdlvgvsDIAERTGRTRQNVQQWVNGERRAGKERFPAPEGVAGRSPVWRWGDVNAWLA------ >UniRef50_B5EC14(1-59:60) Phage transcriptional regulator, AlpA n=5 Tax=Bacteria RepID=B5EC14_GEOBB E=2e-06 s/c=0.90 id=19% cov=84% MSHLSETGYLRLPEVLKIIPVCKTVWWEGIKA------GKYPAGVKLSARCTAWRAEDIQALIE------ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * 3946 190 * * * * * * 4089 * * 1 0 * * * * * * 3678 0 0 N 2 3340 * 2788 * * * 4388 4327 * * * 982 * 4150 * * 3376 * * * 2 0 * * * * * * 4198 0 0 N 3 4657 * 4025 5224 * * * 4868 * * * 2465 * 4780 * 4099 831 * * * 3 0 * * * * * * 4492 0 0 R 4 4997 * 5593 3097 4872 5319 * * 2700 2850 4936 3519 4190 4364 2821 * 3126 * * * 4 64 5664 5420 1000 1000 * * 4723 1000 0 S 5 3697 * * * * 6038 * * 5555 3272 * * 1551 2295 5103 3384 3953 4373 * * 5 24 5913 * 1000 1000 * 0 5022 1000 1000 A 6 2654 5850 * 4842 * 4481 5717 * 4180 4602 5697 5476 2124 3224 5996 2785 3939 5338 * * 6 27 * 5751 * * * 0 5074 0 1000 V 7 5315 * 3670 3433 * 4675 * 4054 4527 2860 2722 5336 4519 5055 3916 3975 3115 5160 * * 7 37 5996 6676 1585 585 0 * 5318 1000 1557 R 8 4881 * * 6354 * 3882 * * 2613 * * 5201 6013 2841 1178 5223 4121 6157 * * 8 34 5415 * 1582 586 0 * 5426 1594 1000 I 9 6718 * * * 2625 * * 1859 * 1453 5750 * 6471 * 6341 * 6561 3701 * 4110 9 13 6804 * 0 * * * 5584 1000 0 L 10 6183 * * 6996 6416 * * 2176 * 954 3794 * * * * 5800 * 2942 * 6795 10 0 * * * * * * 5702 0 0 R 11 6728 * 4079 * 6042 * * * 3968 6507 * 3859 4532 * 794 3222 4462 * * * 11 10 7161 * 0 * * * 5707 1000 0 L 12 4683 7247 * 5291 6996 6713 * 2620 4689 1902 3212 * 3785 7532 3019 * 5991 3851 4735 6533 12 0 * * * * * * 5794 0 0 P 13 3320 * 3679 3987 6632 6352 5806 * 1954 6649 * 3841 2771 4475 2891 5199 5199 * * * 13 26 5830 * 2807 222 * * 5794 1000 0 A 14 3400 * 2534 1675 5933 7031 5529 * 4452 * * * * 2151 4079 5722 5855 7028 * * 14 0 * * * * * * 5794 0 0 V 15 4854 6413 * * * * * 3328 * 2883 4850 * * * 6126 * 4249 697 * * 15 0 * * * * * * 5790 0 0 I 16 2099 3733 * 3652 * * * 3870 4047 2546 3878 * 5366 4346 5105 4421 4451 4355 * * 16 12 6923 * 1585 585 * * 5790 1000 0 Q 17 2488 * 3732 1762 * 6052 7046 * 3339 * 6734 5327 5845 2777 4307 5291 4794 5606 * * 17 0 * * * * * * 5790 0 0 K 18 5375 6341 * 5408 4181 * 5405 2893 3796 2381 2844 * 6923 6602 2439 * 4935 3932 * 5494 18 0 * * * * * * 5790 0 0 T 19 6343 5281 * * 4442 * * 3432 * 1657 6737 * * * * * 1568 2828 * 5751 19 0 * * * * * * 5790 0 0 G 20 4420 6898 * * * 669 * * * * * 5445 3244 4871 6527 4126 3759 6450 * * 20 48 5766 6138 0 * * * 5790 1000 0 M 21 * 5626 * * 4733 * * 2421 6387 1598 3730 * * * 3704 * 6522 2086 * 6093 21 25 5839 * 0 * * 0 5759 1655 1000 A 22 4480 5318 * * * 3397 5205 * 3775 * * 5502 7019 6429 * 581 5304 * * * 22 0 * * * * * 0 5759 0 1000 R 23 6137 * 5756 4058 * 6842 4817 * 2641 6154 6624 * 6452 5267 934 5712 5925 3763 * 6838 23 0 * * * * * 0 5759 0 1000 A 24 2511 * * 5843 * 5323 * 6054 6062 * * 5060 4687 4072 5051 1292 2504 6819 * * 24 0 * * * * 0 * 5759 0 1000 T 25 4050 * * 7625 * 5033 5555 * 4530 6369 4747 4590 * 5213 6413 2723 965 * 5151 5795 25 21 * 6128 * * * * 5790 0 0 I 26 5144 * * * 4314 * * 1193 * 1775 * * * * 6383 * 6381 2958 4682 * 26 37 * 5299 * * * 0 5765 0 1000 Y 27 5503 * 4944 6155 4840 * 4828 * * 7220 * 5356 * 4284 4123 * * * 2145 1013 27 48 * 4947 * * * 0 5727 0 1949 D 28 3683 * 3162 3330 6656 * 5163 * 3063 5339 * 4305 * 4583 1409 5100 6026 7388 * 6742 28 22 * 6028 * * 2169 363 5668 0 2592 W 29 * * 5907 6537 6881 4991 * * 3277 1754 3418 * * 4612 2996 * 5307 6062 2431 4396 29 104 * 3846 * * 2120 377 5671 0 2625 L 30 4641 * * 4148 * * * 2133 * 3562 1978 * * 5332 5961 * 4013 2277 5167 * 30 17 * 6432 * * * 0 5558 0 3729 N 31 3275 * 4752 * * 6355 6035 * 1502 4323 * 2689 * 4895 2714 3774 6083 * * * 31 463 * 1865 * * * 0 5514 0 3712 P 32 2337 * 5882 4056 * 5209 5425 * 2031 * 6086 4738 2840 * 6249 3216 3371 * 5593 * 32 966 * 1035 * * 3592 125 5351 0 4918 K 33 * * 3559 3815 * 4200 * * 1862 3867 * 3331 4058 4068 3126 4922 4304 5119 * * 33 359 * 2183 * * 3710 115 5021 0 5189 S 34 3531 * 3169 4043 * 3720 4768 4662 * * 4673 3197 * * 3546 1627 * 4970 * * 34 224 * 2800 * * * 0 4978 0 5370 P 35 3479 * * * * 4225 * * 2041 2287 * * 2870 4724 2420 * 4394 * * * 35 55 * 4751 * * 3140 174 4753 0 5432 R 36 2647 * * 3543 * * 4859 * 4911 * * * 4143 3810 1812 5211 4873 4427 * 2586 36 49 * 4916 * * 4608 60 5099 0 5058 Y 37 3421 * 3194 5173 * 3646 2728 * * 4625 4950 * * 4107 5169 * * 4641 * 1556 37 59 * 4641 * * 1390 693 5118 0 5016 D 38 5091 * 1512 2394 * 5328 * * 3331 * * 4403 5529 3729 2775 * * 6050 * * 38 21 * 6137 * * 651 1461 5427 0 4735 A 39 4550 6926 4078 4798 * 522 * * * * * * 3015 * * 4896 * * * * 39 0 * * * * 685 1403 5653 0 3925 T 40 4540 * 2795 2898 7001 7566 * 5041 2764 4233 6603 5500 * * 2901 4303 2288 6248 * * 40 0 * * * * 534 1692 5735 0 2666 F 41 5838 * * * 177 * * 6425 * 4863 * * * * * * * 5256 * 5293 41 0 * * * * * 0 5798 0 1455 P 42 * * * * * * * * * * * * 48 * * * 5760 6136 * * 42 0 * * * * 970 1030 5798 0 1455 K 43 3275 6029 * 4426 * * 7056 * 1504 6066 5278 6024 2961 3796 2681 4748 5313 * * * 43 0 * * * * * 0 5795 0 1000 K 44 4165 5619 * * * 5116 * * 4286 * * 5283 659 4740 3920 3619 * * * * 44 0 * * * * * 0 5795 0 1000 R 45 * * 6995 5837 3275 * 6596 1565 5412 4994 5750 * * 5968 4527 * 5071 1560 * 5548 45 22 6029 * 0 * 0 * 5795 1000 1000 M 46 4236 * 7252 7131 * 5846 3985 * 1384 5034 6907 7088 4905 3342 2298 5001 5622 5525 * 6097 46 0 * * * * * * 5790 0 0 L 47 6847 * * 6128 5226 * * 2131 * 967 4402 * 6539 * 6427 * 7037 3034 * 6495 47 34 5438 * 753 1298 * * 5790 1925 0 G 48 5003 * * * * 1084 * 6800 6734 * * 3945 * 4658 * 1938 3235 7131 * * 48 164 4718 3851 1266 776 * * 5790 2107 0 V 49 4033 * 4484 2900 * 1942 * 6967 4424 6335 5925 4823 2997 5145 4304 3129 5497 4871 * 7259 49 48 5345 6957 1321 738 0 * 5712 1733 2921 K 50 4906 * * * * 3176 6138 * 3898 * * 2977 * 5075 825 4227 * * * * 50 27 6955 6596 2322 322 0 * 5795 1000 1000 S 51 1972 3584 * * 6715 * * 6083 6150 4699 7413 6289 6949 * 2959 1936 3284 4171 * 6660 51 11 7042 * 0 * 0 * 5777 1000 1000 V 52 7004 6450 * * * * * 3035 5443 3721 * * 4951 * 5124 3268 2438 1284 * * 52 53 * 4804 * * * * 5790 0 0 G 53 2077 6130 * * 4676 1628 * * * 5336 6417 * * * 2389 5370 * 2893 * * 53 0 * * * * 0 * 5733 0 1945 W 54 * * * * 2712 * * 6144 * * * * * * * * * * 378 3977 54 0 * * * * * * 5790 0 0 I 55 5816 * 2707 6907 5344 * 4581 5675 4421 2674 * 6495 5147 * 1947 4976 4885 3104 5641 5022 55 0 * * * * * * 5790 0 0 E 56 3155 * 5710 1903 4575 * * 4833 4041 2966 4758 5845 5295 5708 4127 4140 7002 4084 4951 5409 56 0 * * * * * * 5790 0 0 A 57 2645 * 3810 2826 * 4843 4189 7088 5059 7012 * 5254 6625 5888 * 1530 5610 4497 7055 5543 57 0 * * * * * * 5790 0 0 E 58 3944 * 1406 1031 * * * * * * * * * 4619 * 6289 * 6090 * * 58 0 * * * * * * 5790 0 0 I 59 * * * * * * * 1315 * 2842 * * * * * * * 1166 * 6262 59 0 * * * * * * 5790 0 0 D 60 5060 * 2518 2055 * * 5845 4914 5707 4602 5092 3006 * 2671 3406 * 5032 * * 6907 60 0 * * * * * * 5790 0 0 E 61 1482 * 3890 3462 7217 6128 6837 7100 4098 * * 3711 * 3174 3578 3841 4794 * * 6429 61 0 * * * * * * 5790 0 0 W 62 * 6596 * * 4477 * 7028 4366 * 5088 * * * * * * * 6374 429 3262 62 0 * * * * * * 5793 0 0 L 63 5874 6733 * 6889 * * * 1476 6341 1590 3321 5780 * 5316 * 5843 * 3319 * * 63 0 * * * * * * 5832 0 0 S 64 1702 * 3285 2515 * 4706 * * 4642 * 6668 3448 * 3648 5064 3376 5089 * * * 64 0 * * * * * * 5765 0 0 Q 65 2088 * 3494 3006 * 4846 * * 3138 * * 3529 6562 3668 3709 2916 5782 * * * 65 0 * * * * * * 5730 0 0 R 66 * * * * * * * * 2325 5053 * * * 2076 907 * * * * * 66 0 * * * * * * 5442 0 0 C 67 1199 5061 * * * 5135 * 3410 4092 4156 3051 4998 * * 5163 * 5287 3445 * * 67 0 * * * * * * 4641 0 0 K 68 3367 * * 929 * * * * 1578 * * * * 4539 * * * * * * 68 0 * * * * * * 4213 0 0 L 69 * * * * * * * * * 913 1727 * * * * * * 2585 * * 69 0 * * * * * * 2633 0 0 I 70 * * * * * * * 0 * * * * * * * * * * * * 70 0 * * 0 * * * 1000 0 0 //