BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (70 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P33997 Prophage CP4-57 regulatory protein alpA n=5 Tax=... 145 3e-34 UniRef50_B2K8D1 Phage transcriptional regulator, AlpA n=2 Tax=Ye... 84 1e-15 UniRef50_Q0HJK3 Phage transcriptional regulator, AlpA n=2 Tax=Sh... 75 6e-13 UniRef50_D0T2W6 Predicted protein n=2 Tax=Acinetobacter radiores... 67 1e-10 UniRef50_A4G2Z1 Prophage CP4-57 regulatory protein alpA n=2 Tax=... 67 2e-10 UniRef50_Q1RDI7 Possible prophage regulatory protein n=15 Tax=En... 65 6e-10 UniRef50_D1P3D5 Conserved domain protein n=1 Tax=Providencia rus... 63 3e-09 UniRef50_Q3SF41 Possible Transcriptional Regulator n=2 Tax=Thiob... 62 4e-09 UniRef50_UPI0001BCF977 putative prophage CP4-57 regulatory prote... 60 1e-08 UniRef50_C4L905 Phage transcriptional regulator, AlpA n=1 Tax=To... 60 2e-08 UniRef50_C6AQQ2 Transcriptional regulator, AlpA family n=6 Tax=P... 60 2e-08 UniRef50_A1TJN4 Phage transcriptional regulator, AlpA n=28 Tax=P... 60 3e-08 UniRef50_B9B2T4 Conserved domain protein n=1 Tax=Burkholderia mu... 59 5e-08 UniRef50_Q4FTD7 Possible prophage regulatory protein AlpA n=5 Ta... 57 1e-07 UniRef50_D0W4G8 Conserved domain protein n=1 Tax=Neisseria ciner... 55 6e-07 UniRef50_Q1Q868 Phage transcriptional regulator, AlpA n=1 Tax=Ps... 55 1e-06 UniRef50_B0U0W1 Phage transcriptional regulator, AlpA n=3 Tax=Ga... 54 1e-06 UniRef50_B4S218 Phage transcriptional regulator, AlpA n=2 Tax=Ga... 54 1e-06 UniRef50_C6CIY7 Phage transcriptional regulator, AlpA n=3 Tax=Pr... 54 1e-06 UniRef50_Q0HVT5 Phage transcriptional regulator, AlpA n=14 Tax=c... 54 2e-06 UniRef50_D0BWH4 Phage protein (Fragment) n=1 Tax=Acinetobacter s... 53 3e-06 UniRef50_Q7MJB2 Predicted transcriptional regulator n=47 Tax=Vib... 53 3e-06 UniRef50_B2JL38 Phage transcriptional regulator, AlpA n=2 Tax=Pr... 53 4e-06 UniRef50_A0Q3W1 Regulatory protein, AlpA family n=6 Tax=Francise... 52 6e-06 UniRef50_C6RQK1 Phage transcriptional regulator, AlpA n=3 Tax=Ac... 52 7e-06 UniRef50_C6S833 Putative prophage regulatory protein n=4 Tax=Nei... 52 8e-06 UniRef50_C6DCW7 Phage transcriptional regulator, AlpA n=3 Tax=Pe... 52 8e-06 UniRef50_A3P008 Prophage CP4-57 regulatory protein (AlpA) n=4 Ta... 51 9e-06 UniRef50_Q0I4F9 Phage transcriptional regulator, AlpA n=2 Tax=Ba... 51 1e-05 UniRef50_Q7P0B9 Probable prophage regulatory protein n=7 Tax=Pro... 51 1e-05 UniRef50_Q8Z105 Phage DNA binding protein n=5 Tax=Enterobacteria... 50 2e-05 UniRef50_Q0HGG2 Phage transcriptional regulator, AlpA n=3 Tax=Ba... 50 2e-05 UniRef50_B7SYF9 Gp29 n=2 Tax=root RepID=B7SYF9_9CAUD 50 2e-05 UniRef50_A4TK05 Transcriptional regulator n=21 Tax=Enterobacteri... 50 2e-05 UniRef50_A5W5Z3 Phage transcriptional regulator, AlpA n=2 Tax=Ps... 50 3e-05 UniRef50_A4SQA2 Prophage regulatory protein n=1 Tax=Aeromonas sa... 49 3e-05 UniRef50_A1SRJ5 Phage transcriptional regulator, AlpA n=1 Tax=Ps... 49 3e-05 UniRef50_C4L9N9 Phage transcriptional regulator, AlpA n=11 Tax=P... 49 4e-05 UniRef50_Q2NDG2 Putative uncharacterized protein n=1 Tax=Erythro... 49 4e-05 UniRef50_Q2NBH3 Predicted transcriptional regulator n=4 Tax=Sphi... 49 6e-05 UniRef50_A1WW70 Phage transcriptional regulator, AlpA n=2 Tax=Ga... 49 7e-05 UniRef50_C1DSG0 Prophage CP4-57 regulatory, AlpA-like protein n=... 48 8e-05 UniRef50_A4SPW1 Probable prophage regulatory protein n=1 Tax=Aer... 48 8e-05 UniRef50_B9THH9 Putative uncharacterized protein n=1 Tax=Ricinus... 48 1e-04 UniRef50_Q46YP9 Prophage CP4-57 regulatory n=1 Tax=Ralstonia eut... 47 2e-04 UniRef50_D0M6T1 Phage transcriptional regulator AlpA n=1 Tax=Vib... 47 2e-04 UniRef50_D0KY14 Phage transcriptional regulator, AlpA n=1 Tax=Ha... 47 2e-04 UniRef50_C0DTI2 Putative uncharacterized protein n=1 Tax=Eikenel... 47 2e-04 UniRef50_B2JC70 Phage transcriptional regulator, AlpA n=2 Tax=Bu... 47 2e-04 UniRef50_D2TNW8 Putative uncharacterized protein n=1 Tax=Citroba... 47 2e-04 UniRef50_A4TNW0 Transcriptional regulator n=18 Tax=Enterobacteri... 47 2e-04 UniRef50_Q5QX32 Prophage CP4-57 regulatory protein-like protein ... 46 3e-04 UniRef50_Q1RPF9 ECs3513 protein n=4 Tax=Escherichia RepID=Q1RPF9... 46 3e-04 UniRef50_D0J4J3 Phage transcriptional regulator, AlpA n=1 Tax=Co... 46 3e-04 UniRef50_A3Z0Z5 DNA-binding protein, putative n=2 Tax=Synechococ... 46 4e-04 UniRef50_C2LJX4 Possible phage transcriptional regulator n=1 Tax... 46 5e-04 UniRef50_A0K329 Phage transcriptional regulator, AlpA n=1 Tax=Bu... 45 5e-04 UniRef50_Q28S53 Phage transcriptional regulator, AlpA n=23 Tax=A... 45 6e-04 UniRef50_P12552 Uncharacterized protein ORF88 n=40 Tax=root RepI... 45 7e-04 UniRef50_B5EWU9 Conserved domain protein n=61 Tax=Enterobacteria... 45 9e-04 UniRef50_C9PEM5 Putative uncharacterized protein n=1 Tax=Vibrio ... 45 9e-04 UniRef50_A5UG77 Predicted transcriptional regulator n=1 Tax=Haem... 45 0.001 UniRef50_D2NKU9 Putative transcriptional regulator n=1 Tax=Esche... 45 0.001 UniRef50_C0VI45 Putative uncharacterized protein n=1 Tax=Acineto... 44 0.001 UniRef50_Q46Z77 Prophage CP4-57 regulatory n=2 Tax=Burkholderiac... 44 0.002 UniRef50_D1NFX2 Prophage CP4-57 regulatory protein n=1 Tax=Haemo... 44 0.002 UniRef50_B5SEZ3 Bacteriophage dna-binding protein n=4 Tax=Proteo... 43 0.002 UniRef50_C2LH22 Putative uncharacterized protein n=1 Tax=Proteus... 43 0.003 UniRef50_UPI00016ADB9E regulatory protein, AlpA family n=3 Tax=p... 43 0.004 UniRef50_D1UHG7 Phage transcriptional regulator, AlpA n=1 Tax=Bu... 43 0.004 UniRef50_A3JW32 Prophage CP4-57 regulatory n=1 Tax=Rhodobacteral... 42 0.004 UniRef50_A4JR07 Phage transcriptional regulator, AlpA n=6 Tax=Bu... 42 0.008 UniRef50_Q13HX3 Phage transcriptional regulator, AlpA n=5 Tax=Pr... 42 0.009 UniRef50_C8QZM7 Phage transcriptional regulator, AlpA n=1 Tax=De... 41 0.009 UniRef50_A1SV81 Phage transcriptional regulator, AlpA n=4 Tax=Ga... 41 0.009 UniRef50_B7VPA4 Predicted transcriptional regulator n=31 Tax=Gam... 41 0.012 UniRef50_A4CWC5 Predicted transcriptional regulator n=1 Tax=Syne... 41 0.012 UniRef50_A3UV40 Transcriptional regulator, putative n=2 Tax=Prot... 41 0.013 UniRef50_A9D684 Phage transcriptional regulator, AlpA n=2 Tax=Al... 41 0.014 UniRef50_UPI0001AF502E phage transcriptional regulator, AlpA n=1... 40 0.015 UniRef50_UPI0000E0FEEA phage transcriptional regulator, AlpA n=1... 40 0.017 UniRef50_A4JAZ2 Phage transcriptional regulator, AlpA n=1 Tax=Bu... 40 0.018 UniRef50_A9FCF4 DNA-binding protein, putative n=6 Tax=Rhodobacte... 40 0.020 UniRef50_A1U0S6 Phage transcriptional regulator, AlpA n=2 Tax=Ga... 40 0.020 UniRef50_B0TKK3 Phage transcriptional regulator, AlpA n=1 Tax=Sh... 40 0.022 UniRef50_A1VSK2 Phage transcriptional regulator, AlpA n=1 Tax=Po... 40 0.023 UniRef50_A7ZI04 Prophage CP4-57 regulatory protein n=1 Tax=Esche... 40 0.023 UniRef50_Q2SPA0 Predicted transcriptional regulator n=1 Tax=Hahe... 40 0.024 UniRef50_B3Q046 Putative uncharacterized protein n=1 Tax=Rhizobi... 40 0.027 UniRef50_A9IRW1 Strain DSM 12804, complete genome n=1 Tax=Bordet... 40 0.031 UniRef50_Q74H30 Putative uncharacterized protein n=1 Tax=Geobact... 40 0.033 UniRef50_Q2T3P9 Prophage regulatory protein AlpA family protein ... 39 0.038 UniRef50_C4GIW5 Putative uncharacterized protein n=1 Tax=Kingell... 39 0.043 UniRef50_A8AM43 Putative uncharacterized protein n=4 Tax=Enterob... 39 0.045 UniRef50_B1LN65 Transcriptional regulator, AlpA family n=8 Tax=E... 39 0.047 UniRef50_A6VCA3 Transcriptional regulator, AlpA family n=2 Tax=P... 39 0.057 UniRef50_B1Y1X4 Phage transcriptional regulator, AlpA n=1 Tax=Le... 39 0.073 UniRef50_Q47ZW9 Putative uncharacterized protein n=1 Tax=Colwell... 38 0.098 >UniRef50_P33997 Prophage CP4-57 regulatory protein alpA n=5 Tax=Enterobacteriaceae RepID=ALPA_ECOLI Length = 70 Score = 145 bits (367), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 70/70 (100%), Positives = 70/70 (100%) Query: 1 MNNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEID 60 MNNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEID Sbjct: 1 MNNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEID 60 Query: 61 EWLSQRCKLI 70 EWLSQRCKLI Sbjct: 61 EWLSQRCKLI 70 >UniRef50_B2K8D1 Phage transcriptional regulator, AlpA n=2 Tax=Yersinia RepID=B2K8D1_YERPB Length = 75 Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 33/63 (52%), Positives = 51/63 (80%) Query: 6 AVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 +V+ILR+PA+++K G+ R+T+YDWL+P S R+D TFP++ LG K+VGW+E+EID W+ Sbjct: 5 SVKILRIPALVKKLGIGRSTVYDWLDPNSDRHDPTFPQRVKLGAKTVGWLESEIDTWILN 64 Query: 66 RCK 68 + K Sbjct: 65 KTK 67 >UniRef50_Q0HJK3 Phage transcriptional regulator, AlpA n=2 Tax=Shewanella RepID=Q0HJK3_SHESM Length = 71 Score = 75.1 bits (183), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 33/63 (52%), Positives = 47/63 (74%) Query: 1 MNNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEID 60 +++ + I+RL +VI+ TG++R+TIYD NPKSPRYD TFP+K LG ++VGW EI+ Sbjct: 2 LDSNPSYSIVRLASVIKLTGLSRSTIYDKQNPKSPRYDHTFPQKVSLGPRAVGWYFGEIE 61 Query: 61 EWL 63 WL Sbjct: 62 SWL 64 >UniRef50_D0T2W6 Predicted protein n=2 Tax=Acinetobacter radioresistens RepID=D0T2W6_ACIRA Length = 73 Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 30/59 (50%), Positives = 42/59 (71%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 S + +L+L VI K ++R+TIYD L+ KS RYD FPK R LG+ SV W+E E+++WL Sbjct: 9 STMCMLKLKDVINKCQISRSTIYDKLDQKSKRYDPDFPKPRKLGMNSVAWVENEVEQWL 67 >UniRef50_A4G2Z1 Prophage CP4-57 regulatory protein alpA n=2 Tax=Oxalobacteraceae RepID=A4G2Z1_HERAR Length = 73 Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 29/58 (50%), Positives = 40/58 (68%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 ++R+ + +KTG+ +++Y+ LN KS YD FPK LGV SVGWIE E+D WLS R Sbjct: 11 VIRIKRLKEKTGLGNSSVYNKLNFKSKYYDCDFPKPIQLGVSSVGWIEGEVDIWLSSR 68 >UniRef50_Q1RDI7 Possible prophage regulatory protein n=15 Tax=Enterobacteriaceae RepID=Q1RDI7_ECOUT Length = 98 Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 30/57 (52%), Positives = 41/57 (71%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 RILR+P + Q G++R+TIY+ +NP S YDATFP+ LG SVGW + ID+WL+ Sbjct: 13 RILRMPELSQLLGISRSTIYEKMNPLSKYYDATFPRPVRLGSGSVGWRSSAIDKWLT 69 >UniRef50_D1P3D5 Conserved domain protein n=1 Tax=Providencia rustigianii DSM 4541 RepID=D1P3D5_9ENTR Length = 80 Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 41/64 (64%) Query: 3 NRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEW 62 N +RILR+ + G++R++IY+ LNP+S YD FPK LG SVGW A +++W Sbjct: 15 NNLPIRILRMTELTVMLGISRSSIYEKLNPRSKYYDENFPKPIKLGASSVGWHYASVEKW 74 Query: 63 LSQR 66 L+ R Sbjct: 75 LTSR 78 >UniRef50_Q3SF41 Possible Transcriptional Regulator n=2 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SF41_THIDA Length = 98 Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 42/61 (68%), Gaps = 3/61 (4%) Query: 7 VRILRLPAVIQKTGMARATIYDWL--NPKSP-RYDATFPKKRMLGVKSVGWIEAEIDEWL 63 RILR V +TG++R++IY L NPK P YD TFPK +G K+VGWIEAEI+ WL Sbjct: 29 TRILRRKQVEARTGLSRSSIYARLRQNPKRPGDYDPTFPKPVSVGAKAVGWIEAEIEAWL 88 Query: 64 S 64 + Sbjct: 89 T 89 >UniRef50_UPI0001BCF977 putative prophage CP4-57 regulatory protein n=1 Tax=Mannheimia haemolytica serotype A2 str. BOVINE RepID=UPI0001BCF977 Length = 77 Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 28/57 (49%), Positives = 37/57 (64%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 VRI+R QK G+ + T DW NPKS RY FPKK LG SVG++E+EI+ ++ Sbjct: 13 VRIIRPIHARQKLGVGKTTFQDWQNPKSKRYRPDFPKKIQLGANSVGYLESEINAFI 69 >UniRef50_C4L905 Phage transcriptional regulator, AlpA n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4L905_TOLAT Length = 117 Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 37/58 (63%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 RI+R+ ++R+TIYD LNPKSPR+D TFP+ LG ++GW ++ W+S Sbjct: 55 RIIRIKEFAAMISLSRSTIYDRLNPKSPRFDPTFPRPIKLGASAIGWHLVDVAAWISS 112 >UniRef50_C6AQQ2 Transcriptional regulator, AlpA family n=6 Tax=Pasteurellaceae RepID=C6AQQ2_AGGAN Length = 69 Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 41/58 (70%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 RI+R ++ G++++T DW NPKS RY FPKK LGV SVG++E+EI+ ++++ Sbjct: 6 RIIRRLDTMKMLGVSKSTFADWQNPKSKRYRPDFPKKIQLGVNSVGYLESEINSYIAK 63 >UniRef50_A1TJN4 Phage transcriptional regulator, AlpA n=28 Tax=Proteobacteria RepID=A1TJN4_ACIAC Length = 75 Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 29/59 (49%), Positives = 38/59 (64%), Gaps = 6/59 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 R+LR P V Q+TG RA IY + K FP++ LGV++VGW E EID+WL+QR Sbjct: 20 RVLRRPLVEQRTGFKRAHIYSLMKEKK------FPQRVRLGVRAVGWYEDEIDQWLAQR 72 >UniRef50_B9B2T4 Conserved domain protein n=1 Tax=Burkholderia multivorans CGD1 RepID=B9B2T4_9BURK Length = 95 Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 46/65 (70%), Gaps = 5/65 (7%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 +A+RILR+ ++++T ++RAT+Y + D TFPKK L V+S+G++E+E+D W++ Sbjct: 32 NALRILRIKQLVERTNLSRATLYVLMAS-----DPTFPKKIKLTVRSIGFLESEVDAWIA 86 Query: 65 QRCKL 69 R +L Sbjct: 87 ARAEL 91 >UniRef50_Q4FTD7 Possible prophage regulatory protein AlpA n=5 Tax=Moraxellaceae RepID=Q4FTD7_PSYA2 Length = 93 Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 39/59 (66%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 ++L + V TG++R+TIY+ +N KS RYD TFPKK L V W+ +EI EW++ + Sbjct: 29 QLLNIKDVGSYTGLSRSTIYEMVNEKSDRYDPTFPKKVQLTQVRVVWVASEIAEWINNK 87 >UniRef50_D0W4G8 Conserved domain protein n=1 Tax=Neisseria cinerea ATCC 14685 RepID=D0W4G8_NEICI Length = 86 Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 38/60 (63%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 R+LR+ V +K G+ + I+ +PK+ RYDATFPK + + W+E+E+D WLS + Sbjct: 15 RVLRVNQVSEKVGLCVSAIWAKTSPKNARYDATFPKPFKVSANATVWLESELDAWLSAKA 74 >UniRef50_Q1Q868 Phage transcriptional regulator, AlpA n=1 Tax=Psychrobacter cryohalolentis K5 RepID=Q1Q868_PSYCK Length = 86 Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 R++ L V+ T ++ TIYD L+ +S RYD TFP++ L V W+E+EI +WL + Sbjct: 22 RMVPLKDVVYFTALSSTTIYDMLDKRSSRYDPTFPRQVKLSKGRVAWVESEITQWLESK 80 >UniRef50_B0U0W1 Phage transcriptional regulator, AlpA n=3 Tax=Gammaproteobacteria RepID=B0U0W1_FRAP2 Length = 66 Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 39/61 (63%), Gaps = 6/61 (9%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 +I+RL VI+ TG++R+TIYD++ FP++ LG S GW+ +E+DEWL R Sbjct: 3 KIIRLKTVIEMTGLSRSTIYDYMAR------GLFPRQITLGENSRGWLYSEVDEWLETRI 56 Query: 68 K 68 + Sbjct: 57 Q 57 >UniRef50_B4S218 Phage transcriptional regulator, AlpA n=2 Tax=Gammaproteobacteria RepID=B4S218_ALTMD Length = 80 Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 6/59 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 RILRLP V KTG R+TIY + + FP+ +G ++VGW+E++ID+W+ R Sbjct: 19 RILRLPEVKAKTGFGRSTIYALMA------NGEFPRSIRIGARAVGWLESDIDQWIETR 71 >UniRef50_C6CIY7 Phage transcriptional regulator, AlpA n=3 Tax=Proteobacteria RepID=C6CIY7_DICZE Length = 70 Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 36/61 (59%), Gaps = 6/61 (9%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 RILR V KTG RA IY+ + + FPK LGV++VGW AEID+W++ R Sbjct: 13 RILRRAEVEAKTGFKRAHIYNLMK------EGKFPKALHLGVRAVGWDSAEIDQWITDRL 66 Query: 68 K 68 K Sbjct: 67 K 67 >UniRef50_Q0HVT5 Phage transcriptional regulator, AlpA n=14 Tax=cellular organisms RepID=Q0HVT5_SHESR Length = 73 Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 6/60 (10%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 ++++R+ VI TG+AR+TIY +++ FPK LG +SV W+E+E+ EW+ +R Sbjct: 5 IKLIRIKDVIDTTGLARSTIYKYVDK------GIFPKAVKLGSRSVAWVESEVQEWILER 58 >UniRef50_D0BWH4 Phage protein (Fragment) n=1 Tax=Acinetobacter sp. RUH2624 RepID=D0BWH4_9GAMM Length = 56 Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 39/56 (69%), Gaps = 1/56 (1%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 +++RLP + + TG++R++IYD LNPKS RYD+TFP+ L S W +E+ W+ Sbjct: 2 QLIRLPELEKLTGLSRSSIYDRLNPKSKRYDSTFPRAIKLS-HSSRWRLSEVLNWI 56 >UniRef50_Q7MJB2 Predicted transcriptional regulator n=47 Tax=Vibrionaceae RepID=Q7MJB2_VIBVY Length = 73 Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 6/62 (9%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 +R L+L V++KT ++R+ IY +N D FP+ LG +++ W+E+E+DEW+ R Sbjct: 16 MRFLKLKEVMEKTALSRSAIYRKMN------DGEFPESVSLGERAIAWVESEVDEWMEMR 69 Query: 67 CK 68 + Sbjct: 70 LE 71 >UniRef50_B2JL38 Phage transcriptional regulator, AlpA n=2 Tax=Proteobacteria RepID=B2JL38_BURP8 Length = 71 Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 6/56 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 R+LR+P V+++TGM+ T+Y ++ D TFP+ LG V W+E+EID W+ Sbjct: 6 RLLRMPEVVRRTGMSSTTVYRRIS------DGTFPRPVSLGCNRVAWLESEIDAWI 55 >UniRef50_A0Q3W1 Regulatory protein, AlpA family n=6 Tax=Francisella RepID=A0Q3W1_FRATN Length = 59 Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 6/62 (9%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 ++ILRL V++ TG ++ TIY W+N FPK L SVGW+EA+I++W+ + Sbjct: 1 MKILRLKQVVEMTGTSKTTIYRWINANQ------FPKPINLSHASVGWLEADINDWIQSK 54 Query: 67 CK 68 + Sbjct: 55 IQ 56 >UniRef50_C6RQK1 Phage transcriptional regulator, AlpA n=3 Tax=Acinetobacter RepID=C6RQK1_ACIRA Length = 76 Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 +I+ + V+Q T ++RA IY+ +N KS YD TFPK L +GW EI++W+ + Sbjct: 13 QIVNIKEVVQFTSISRAKIYEMINEKSKYYDPTFPKPVRLSESRIGWSAWEINQWIEDKL 72 Query: 68 K 68 + Sbjct: 73 E 73 >UniRef50_C6S833 Putative prophage regulatory protein n=4 Tax=Neisseria RepID=C6S833_NEIML Length = 71 Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 38/57 (66%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 +LR+ V ++ G++R+T+++W N KS Y A FP+ + VGW+ +EID+++ + Sbjct: 5 VLRVNQVAERLGVSRSTVWNWGNTKSRHYRADFPRPFKVSANVVGWLSSEIDDYIGK 61 >UniRef50_C6DCW7 Phage transcriptional regulator, AlpA n=3 Tax=Pectobacterium carotovorum RepID=C6DCW7_PECCP Length = 86 Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 39/59 (66%), Gaps = 6/59 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 R++RLP V+ TG++R+T+Y+ K+ FP + LG K+V W+E+EI W+++R Sbjct: 24 RLMRLPEVLHVTGISRSTLYELSGRKA------FPARVPLGGKNVAWVESEIHHWVAER 76 >UniRef50_A3P008 Prophage CP4-57 regulatory protein (AlpA) n=4 Tax=Burkholderia pseudomallei RepID=A3P008_BURP0 Length = 70 Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 5/60 (8%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 R+LR+ V+++TG++R+TIY + + D TFPKK L ++ G IE ++D W++ R Sbjct: 14 RVLRIKDVVERTGLSRSTIYVLM-----KSDPTFPKKVGLSARTTGVIEHQLDAWIASRT 68 >UniRef50_Q0I4F9 Phage transcriptional regulator, AlpA n=2 Tax=Bacteria RepID=Q0I4F9_HAES1 Length = 61 Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 6/58 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 RILR+ V QKTG+ R+TIY + TFP + LG +S GW E+E+D W+ Q Sbjct: 3 RILRIKDVCQKTGLPRSTIYARIK------QGTFPAQLKLGARSSGWKESELDLWIEQ 54 >UniRef50_Q7P0B9 Probable prophage regulatory protein n=7 Tax=Proteobacteria RepID=Q7P0B9_CHRVO Length = 72 Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 6/60 (10%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 +R LRLP VI G++R+++YD + +FP LG KSV W+ +EID W++ R Sbjct: 13 LRFLRLPEVISTCGLSRSSVYDAIK------RGSFPAPVPLGGKSVAWLSSEIDVWMAGR 66 >UniRef50_Q8Z105 Phage DNA binding protein n=5 Tax=Enterobacteriaceae RepID=Q8Z105_SALTI Length = 107 Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 6/59 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 R +RLP V+ G++R+TIYD ++ ++ FPK+ LG K+V W ++EI W++ R Sbjct: 26 RFIRLPEVMHLCGLSRSTIYDLISREA------FPKQISLGGKNVAWAQSEITAWMTDR 78 >UniRef50_Q0HGG2 Phage transcriptional regulator, AlpA n=3 Tax=Bacteria RepID=Q0HGG2_SHESM Length = 66 Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 39/59 (66%), Gaps = 6/59 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 +I+RLP V +TG++R++IY ++ FP LG ++VGW+EA+I++WL +R Sbjct: 4 KIMRLPEVKSRTGLSRSSIYLRISK------GEFPASISLGDRAVGWLEADIEQWLDER 56 >UniRef50_B7SYF9 Gp29 n=2 Tax=root RepID=B7SYF9_9CAUD Length = 129 Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 6/58 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 +++P V ++TG+ + TIYD ++ TFP LG +VGWIEAE+D W + R Sbjct: 65 FIKMPEVKRRTGLGKTTIYDRIS------AGTFPAPVPLGGNAVGWIEAEVDAWQAAR 116 >UniRef50_A4TK05 Transcriptional regulator n=21 Tax=Enterobacteriaceae RepID=A4TK05_YERPP Length = 61 Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 40/63 (63%), Gaps = 6/63 (9%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 ++ ++LRL V QKTG+ R+ IY ++ + FP+ +G SV W+E+EIDEW++ Sbjct: 2 TSYQLLRLRQVEQKTGLKRSQIYLYMK------EGAFPRSIKIGPASVAWLESEIDEWIN 55 Query: 65 QRC 67 ++ Sbjct: 56 KKL 58 >UniRef50_A5W5Z3 Phage transcriptional regulator, AlpA n=2 Tax=Pseudomonas RepID=A5W5Z3_PSEP1 Length = 70 Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 38/57 (66%), Gaps = 6/57 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 R+LRLP V++ TGM R T+Y + + TFPK+ +G KSV W +++I++W++ Sbjct: 9 RLLRLPDVLRITGMGRNTVYTRIK------EGTFPKQVKIGPKSVAWRQSDINQWMA 59 >UniRef50_A4SQA2 Prophage regulatory protein n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449 RepID=A4SQA2_AERS4 Length = 69 Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 6/61 (9%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 +R+LR+ VI K G+++ TIY + + TFP+ +G KSV W+E EI++WL+ + Sbjct: 6 IRLLRIKDVISKVGLSKPTIYLRMK------EGTFPRPVSIGPKSVAWVEHEINDWLTAK 59 Query: 67 C 67 Sbjct: 60 I 60 >UniRef50_A1SRJ5 Phage transcriptional regulator, AlpA n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SRJ5_PSYIN Length = 74 Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 40/63 (63%), Gaps = 6/63 (9%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 ++ILRL V++KTG++RA +Y + D FP + ++SVGW+++E++ W+ R Sbjct: 1 MKILRLADVVKKTGLSRAMLYKLMK------DGRFPLNLHISMRSVGWVDSEVEIWMENR 54 Query: 67 CKL 69 ++ Sbjct: 55 LEM 57 >UniRef50_C4L9N9 Phage transcriptional regulator, AlpA n=11 Tax=Proteobacteria RepID=C4L9N9_TOLAT Length = 79 Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 6/61 (9%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 RILRL V K+G RA IY + FP+ LGV++VGW EID W+++R Sbjct: 13 RILRLDEVEAKSGFKRAHIYSLMK------KGEFPQSLRLGVRAVGWDSTEIDLWITERL 66 Query: 68 K 68 K Sbjct: 67 K 67 >UniRef50_Q2NDG2 Putative uncharacterized protein n=1 Tax=Erythrobacter litoralis HTCC2594 RepID=Q2NDG2_ERYLH Length = 77 Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 6/64 (9%) Query: 4 RSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 R R++ LP V + G+ R+TIY W+ + FP LG SV W E ID W+ Sbjct: 17 RQVTRLIHLPEVQHRVGLGRSTIYRWMA------EGKFPGPVELGGYSVAWEERAIDVWI 70 Query: 64 SQRC 67 SQR Sbjct: 71 SQRL 74 >UniRef50_Q2NBH3 Predicted transcriptional regulator n=4 Tax=Sphingomonadales RepID=Q2NBH3_ERYLH Length = 88 Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 6/57 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 R++RLP V+ + G+ R IY + + FPK R LG + W+EAEID+W+ Sbjct: 20 RLIRLPEVMARVGLRRTAIYQRMR------EGRFPKSRSLGPRCTVWVEAEIDDWIG 70 >UniRef50_A1WW70 Phage transcriptional regulator, AlpA n=2 Tax=Gammaproteobacteria RepID=A1WW70_HALHL Length = 71 Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 40/61 (65%), Gaps = 6/61 (9%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 R+LR+ +VI++ G+ R+TIY + + FPK LG +++ W E++I+EW+S+R Sbjct: 14 RLLRINSVIKRVGLGRSTIYKKVK------EGGFPKPIKLGERAIAWRESDIEEWISRRH 67 Query: 68 K 68 + Sbjct: 68 Q 68 >UniRef50_C1DSG0 Prophage CP4-57 regulatory, AlpA-like protein n=1 Tax=Azotobacter vinelandii DJ RepID=C1DSG0_AZOVD Length = 95 Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 6/59 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 R+LRLP V KTG ++ IY + TFP +G SV W+EAE+D+W++ R Sbjct: 20 RLLRLPDVESKTGKSKQAIYAAIR------AGTFPAPVPIGRNSVAWLEAEVDQWIADR 72 >UniRef50_A4SPW1 Probable prophage regulatory protein n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449 RepID=A4SPW1_AERS4 Length = 77 Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 7/63 (11%) Query: 6 AVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGV-KSVGWIEAEIDEWLS 64 A+R +R+ I +TG+++++IYD + FPK LG +SV +IEAEID W++ Sbjct: 14 ALRFIRVREAINRTGLSKSSIYDMM------AQGQFPKTVRLGSGRSVAFIEAEIDAWMA 67 Query: 65 QRC 67 +R Sbjct: 68 ERV 70 >UniRef50_B9THH9 Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9THH9_RICCO Length = 376 Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 3/66 (4%) Query: 2 NNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVK---SVGWIEAE 58 R ++LRL V Q TG+ R++IY ++P+S YD TFP+ L +VGW E + Sbjct: 303 GGRRVGKVLRLRQVEQMTGLKRSSIYYRMDPRSRYYDPTFPRCFSLSTTESGAVGWDEEQ 362 Query: 59 IDEWLS 64 ++ W++ Sbjct: 363 VNAWVA 368 >UniRef50_Q46YP9 Prophage CP4-57 regulatory n=1 Tax=Ralstonia eutropha JMP134 RepID=Q46YP9_RALEJ Length = 67 Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 7/66 (10%) Query: 1 MNNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEID 60 MN + RI+RLP V ++ G+ + IY + D TFP LG ++ GWIE E+ Sbjct: 1 MNTQPQRRIIRLPEVCERVGLGKTAIYGRIK------DHTFPSPIKLG-RASGWIEEEVQ 53 Query: 61 EWLSQR 66 +W+ ++ Sbjct: 54 QWVDEQ 59 >UniRef50_D0M6T1 Phage transcriptional regulator AlpA n=1 Tax=Vibrio sp. Ex25 RepID=D0M6T1_VIBSE Length = 66 Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 6/56 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 +I+RLP VI TG++R+TIY ++ S FP LG ++VGW++ +I++WL Sbjct: 4 KIIRLPEVIDMTGLSRSTIYLRMSQGS------FPLSISLGERAVGWLKVDIEKWL 53 >UniRef50_D0KY14 Phage transcriptional regulator, AlpA n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KY14_HALNC Length = 56 Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 6/58 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 ILRL V++ TG +R++IY W++ FP+ LGV++VGW +E+ +WL R Sbjct: 4 ILRLHDVLRITGASRSSIYLWVSA------GIFPQPVKLGVRAVGWRRSEVQQWLDDR 55 >UniRef50_C0DTI2 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DTI2_EIKCO Length = 137 Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKS-PRYDATFPKKRMLGVKSVGW 54 +R+LRLP V+ TG++RA IY NPK RYD FP++ L +V W Sbjct: 56 MRMLRLPDVMAITGLSRAAIYAKCNPKDKARYDPDFPQRVQLSANTVAW 104 >UniRef50_B2JC70 Phage transcriptional regulator, AlpA n=2 Tax=Burkholderiaceae RepID=B2JC70_BURP8 Length = 73 Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 6/62 (9%) Query: 4 RSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 R+ I+R P V ++TG++R+TIY + TFP LGV+SVGW A+I+ +L Sbjct: 7 RAPTAIMRRPEVERETGLSRSTIYGRIK------SGTFPPPVRLGVRSVGWRSADIEAFL 60 Query: 64 SQ 65 + Sbjct: 61 TS 62 >UniRef50_D2TNW8 Putative uncharacterized protein n=1 Tax=Citrobacter rodentium ICC168 RepID=D2TNW8_CITRO Length = 79 Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 6/58 (10%) Query: 6 AVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 A R +R+P V+ + G +R T+Y+ + + FP + +G + V ++E+EIDEW+ Sbjct: 16 AKRFIRVPDVLNRVGFSRTTLYERIK------EGNFPDRVKIGPRCVAFVESEIDEWI 67 >UniRef50_A4TNW0 Transcriptional regulator n=18 Tax=Enterobacteriaceae RepID=A4TNW0_YERPP Length = 66 Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 6/59 (10%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 S + ++RLP VI+K + +++IY ++ FP+ LG +SV W+E+E+DEW+ Sbjct: 2 SDINLIRLPEVIEKIRLKKSSIYHLISLNQ------FPRPIKLGPRSVAWVESEVDEWV 54 >UniRef50_Q5QX32 Prophage CP4-57 regulatory protein-like protein n=2 Tax=Idiomarina RepID=Q5QX32_IDILO Length = 68 Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 8/61 (13%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKK-RMLGVKSVGWIEAEIDEWLSQ 65 +R LR+ V ++ G+ R +IY +N + TFPK R+LG K V W+++E+DEW+ + Sbjct: 1 MRFLRINEVRERIGLGRTSIYKMVN------EGTFPKPVRVLG-KKVAWVDSEVDEWMLE 53 Query: 66 R 66 R Sbjct: 54 R 54 >UniRef50_Q1RPF9 ECs3513 protein n=4 Tax=Escherichia RepID=Q1RPF9_ECOLX Length = 72 Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 6/60 (10%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 S R +R+P V+ + G +R T+Y+ + + FP + +G + V ++E+EIDEW+ Sbjct: 8 SVKRFIRVPDVLNRVGFSRTTLYERIK------EGNFPDRVKIGPRCVAFVESEIDEWIE 61 >UniRef50_D0J4J3 Phage transcriptional regulator, AlpA n=1 Tax=Comamonas testosteroni CNB-2 RepID=D0J4J3_COMTE Length = 55 Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 32/46 (69%) Query: 20 GMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 G++R+T+Y LNPK+ YD +FPK LG+K+VGW ++ ++ + Sbjct: 2 GLSRSTVYLRLNPKTKYYDPSFPKPIQLGMKAVGWKLEDVYSYIEK 47 >UniRef50_A3Z0Z5 DNA-binding protein, putative n=2 Tax=Synechococcus RepID=A3Z0Z5_9SYNE Length = 68 Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 6/59 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 R+LRLP VI + G++R TIY + FP++ ++G ++V W + E++ W++ + Sbjct: 7 RLLRLPEVIHRVGLSRTTIYSLIA------TGEFPRQIVIGPRAVAWSQQELEAWITSK 59 >UniRef50_C2LJX4 Possible phage transcriptional regulator n=1 Tax=Proteus mirabilis ATCC 29906 RepID=C2LJX4_PROMI Length = 68 Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 6/59 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 ++LRL V+ +TG +++ Y ++ FPK+ +G +SV +IE+E+DEW+ QR Sbjct: 4 KLLRLDEVLDRTGYSKSWTYKLIDK------GEFPKQVKIGSRSVRFIESEVDEWIEQR 56 >UniRef50_A0K329 Phage transcriptional regulator, AlpA n=1 Tax=Burkholderia cenocepacia HI2424 RepID=A0K329_BURCH Length = 380 Score = 45.4 bits (106), Expect = 5e-04, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 3/65 (4%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLG---VKSVGWIEAEIDE 61 +A ++ RL V++ TG+ R++IY+ ++ S YD+TFP+ LG + GW E + Sbjct: 310 TAGKVARLKRVMELTGLGRSSIYNRMDEGSKHYDSTFPRSFKLGSGEAGATGWDEDAVKS 369 Query: 62 WLSQR 66 W++ + Sbjct: 370 WVAAQ 374 >UniRef50_Q28S53 Phage transcriptional regulator, AlpA n=23 Tax=Alphaproteobacteria RepID=Q28S53_JANSC Length = 76 Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 6/56 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 RI+RL V+ +TG++R+T+Y + + TFP + + V GW E+EI EW+ Sbjct: 6 RIVRLTTVLDRTGLSRSTLYRKI------AEGTFPAQLRISVHGAGWRESEIGEWI 55 >UniRef50_P12552 Uncharacterized protein ORF88 n=40 Tax=root RepID=Y9K_BPP4 Length = 88 Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 6/59 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 R LR+P V+ G++R+TIY+ + FP + LG K+V W+ +E+ W++ R Sbjct: 26 RFLRVPEVMHLCGLSRSTIYELIR------KGEFPPQVSLGGKNVAWLHSEVTAWMAGR 78 >UniRef50_B5EWU9 Conserved domain protein n=61 Tax=Enterobacteriaceae RepID=B5EWU9_SALA4 Length = 72 Score = 44.7 bits (104), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 6/56 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 +RLP VI++TG + IY+ + FP + G+++V +IE+EIDEW+ Sbjct: 12 FIRLPEVIKRTGFGKTWIYELIKA------GRFPSQVKTGIRAVAFIESEIDEWIE 61 >UniRef50_C9PEM5 Putative uncharacterized protein n=1 Tax=Vibrio furnissii CIP 102972 RepID=C9PEM5_VIBFU Length = 75 Score = 44.7 bits (104), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 7/55 (12%) Query: 9 ILRLPAVIQKTGM-ARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEW 62 +LR P V+ TG +R TIY+W+ TFPK +G S+GW+++E D W Sbjct: 15 VLRFPEVLALTGARSRQTIYNWME------RGTFPKPIKIGPNSIGWLKSECDAW 63 >UniRef50_A5UG77 Predicted transcriptional regulator n=1 Tax=Haemophilus influenzae PittGG RepID=A5UG77_HAEIG Length = 71 Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 6/60 (10%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 A R ++LP V+ KTG+ R++IY +N FP+ L ++ W+E+E++ W+ Sbjct: 7 QAERFIKLPEVMNKTGLGRSSIYRKMN------TGDFPRSIQLNKNNIVWLESEVNAWMQ 60 >UniRef50_D2NKU9 Putative transcriptional regulator n=1 Tax=Escherichia coli SE15 RepID=D2NKU9_ECOLX Length = 75 Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 6/58 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 R+LR+ VI TG+ ++TIY + + FP + +G +SV W+E E++EW+ + Sbjct: 15 RLLRISEVINLTGLPKSTIYLKIK------NDEFPNQVSIGSRSVAWVEHEVNEWIEK 66 >UniRef50_C0VI45 Putative uncharacterized protein n=1 Tax=Acinetobacter sp. ATCC 27244 RepID=C0VI45_9GAMM Length = 64 Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 31/44 (70%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKS 51 +++ + VI+ TG++R+TIY+ ++ SP YD TFPKK + K+ Sbjct: 13 QLISIKKVIEFTGVSRSTIYEAMDENSPYYDPTFPKKITISQKT 56 >UniRef50_Q46Z77 Prophage CP4-57 regulatory n=2 Tax=Burkholderiaceae RepID=Q46Z77_RALEJ Length = 87 Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 6/59 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 R +RLP VI G+ ++IYD + R D FPK L KSV W+ +EI +W+ R Sbjct: 29 RFMRLPEVIAVCGLPASSIYDGMR----RGD--FPKPVPLAGKSVAWLSSEIRQWMESR 81 >UniRef50_D1NFX2 Prophage CP4-57 regulatory protein n=1 Tax=Haemophilus influenzae HK1212 RepID=D1NFX2_HAEIN Length = 82 Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 3/71 (4%) Query: 2 NNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDE 61 + A R LR + ++ G++ T+ DW NPK+ RY FPK + + ++E+EI+ Sbjct: 11 DTEQAPRFLRRKSTAERLGVSLTTLDDWRNPKAKRYRPDFPKAIKVANGATCFLESEINA 70 Query: 62 W---LSQRCKL 69 + L+ C++ Sbjct: 71 YVLKLANECRV 81 >UniRef50_B5SEZ3 Bacteriophage dna-binding protein n=4 Tax=Proteobacteria RepID=B5SEZ3_RALSO Length = 88 Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 6/62 (9%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 +A R LRLP V+ G+AR++IY+ + + FP+ L V W+++EI +W++ Sbjct: 27 AAERFLRLPEVMSTCGLARSSIYEKVA------NGDFPQPVRLTRCCVAWVDSEIRQWMA 80 Query: 65 QR 66 R Sbjct: 81 AR 82 >UniRef50_C2LH22 Putative uncharacterized protein n=1 Tax=Proteus mirabilis ATCC 29906 RepID=C2LH22_PROMI Length = 85 Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 6/68 (8%) Query: 1 MNNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEID 60 MN + +R+PAV++ TG++R+TI ++ FPK+ L V+ V W E+ Sbjct: 1 MNIKLPTNPIRMPAVLKLTGLSRSTI------RTLEKKGDFPKRMYLSVRCVAWEAHEVY 54 Query: 61 EWLSQRCK 68 EW+ ++ K Sbjct: 55 EWIDKKAK 62 >UniRef50_UPI00016ADB9E regulatory protein, AlpA family n=3 Tax=pseudomallei group RepID=UPI00016ADB9E Length = 63 Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 6/61 (9%) Query: 6 AVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 A++ILRL V+ G+ + T+Y W+ + FP LG +SVGW ++ W+ Sbjct: 2 ALKILRLIGVLDCVGVKKTTLYRWIR------EGKFPAPVQLGARSVGWRATDVQHWVES 55 Query: 66 R 66 R Sbjct: 56 R 56 >UniRef50_D1UHG7 Phage transcriptional regulator, AlpA n=1 Tax=Burkholderia sp. CCGE1001 RepID=D1UHG7_9BURK Length = 70 Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 6/59 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 ++R+ V++K G+ RATIY ++ FP+ +G ++ GW E+E++ WL+ R Sbjct: 4 VMRMKDVVKKIGLCRATIYAMIS------RGEFPRPIRIGERATGWRESELEGWLANRA 56 >UniRef50_A3JW32 Prophage CP4-57 regulatory n=1 Tax=Rhodobacterales bacterium HTCC2150 RepID=A3JW32_9RHOB Length = 65 Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 4/60 (6%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 +R+ ++ TG+ +++IY LN + ++ FP+ R LG ++V W+ E+ EW+ R Sbjct: 8 HFMRISELVATTGIPKSSIYQKLNEE----NSDFPRPRRLGPRAVAWMSDEVYEWMRSRV 63 >UniRef50_A4JR07 Phage transcriptional regulator, AlpA n=6 Tax=Burkholderia RepID=A4JR07_BURVG Length = 83 Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 6/63 (9%) Query: 2 NNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDE 61 N+ A ILR V Q TG++R+TIY + + TFP LG + VGW A+I++ Sbjct: 4 NDDGARTILRRRQVEQCTGLSRSTIYKRMQ------EGTFPPAIALGGRMVGWRAADIEQ 57 Query: 62 WLS 64 +L+ Sbjct: 58 FLA 60 >UniRef50_Q13HX3 Phage transcriptional regulator, AlpA n=5 Tax=Proteobacteria RepID=Q13HX3_BURXL Length = 75 Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 6/69 (8%) Query: 2 NNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDE 61 ++ + R++RL V + G+ +T+Y +L FP+ +G V W+E+EID Sbjct: 8 HSGAKARLIRLREVRTRVGLGASTVYRYLAA------GKFPRPVEIGGGRVAWVESEIDA 61 Query: 62 WLSQRCKLI 70 W++ R +++ Sbjct: 62 WIASRREVV 70 >UniRef50_C8QZM7 Phage transcriptional regulator, AlpA n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QZM7_9DELT Length = 63 Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 6/60 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 RI+R P + K G++ TI+ L K FPK+ LG S GW+E E++EW++ R Sbjct: 7 RIIRKPELWVKVGLSDPTIWR-LEKK-----GKFPKRLRLGGNSCGWLEHEVNEWINNRA 60 >UniRef50_A1SV81 Phage transcriptional regulator, AlpA n=4 Tax=Gammaproteobacteria RepID=A1SV81_PSYIN Length = 79 Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 9/62 (14%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGV---KSVGWIEAEIDEWLS 64 +I+RLP V TG+ARATIY + FP L ++VGW+E EI +W++ Sbjct: 7 KIIRLPEVKDMTGLARATIYKKMATDD------FPMSINLSSGCGRAVGWVEIEILDWIN 60 Query: 65 QR 66 +R Sbjct: 61 ER 62 >UniRef50_B7VPA4 Predicted transcriptional regulator n=31 Tax=Gammaproteobacteria RepID=B7VPA4_VIBSL Length = 63 Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 36/60 (60%), Gaps = 6/60 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 R++RL V+ TG++R+ +Y + + FP + +G ++V W+E+E+ +W+ QR Sbjct: 7 RLIRLNEVLVMTGLSRSGMYRSIEKQQ------FPSQVPIGDRAVAWVESEVQDWVRQRV 60 >UniRef50_A4CWC5 Predicted transcriptional regulator n=1 Tax=Synechococcus sp. WH 7805 RepID=A4CWC5_SYNPV Length = 64 Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust. Identities = 17/62 (27%), Positives = 39/62 (62%), Gaps = 6/62 (9%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 ++ + +RLP V + T +++++IY + FPK+ LG +SV W++++I++W + Sbjct: 3 TSTQFIRLPQVKEITSLSKSSIYRLMEV------GDFPKQVALGARSVVWVKSQIEDWCA 56 Query: 65 QR 66 ++ Sbjct: 57 EK 58 >UniRef50_A3UV40 Transcriptional regulator, putative n=2 Tax=Proteobacteria RepID=A3UV40_VIBSP Length = 74 Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 6/57 (10%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 +++++L AVI+ T ++R+ IY + + FPK+ L +SV W+E++I W+ Sbjct: 14 IKLIKLEAVIEMTTLSRSAIYRGIR------ECRFPKQVRLSRRSVAWVESDIQNWI 64 >UniRef50_A9D684 Phage transcriptional regulator, AlpA n=2 Tax=Alteromonadales RepID=A9D684_9GAMM Length = 80 Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 6/62 (9%) Query: 3 NRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEW 62 N+ RI+R P VI +TG+++ T+Y+ + D FP LG ++VG++++E + Sbjct: 2 NQYQPRIIRKPDVINETGLSKLTLYNRIK------DGLFPPPISLGARAVGFVKSECEAV 55 Query: 63 LS 64 ++ Sbjct: 56 IN 57 >UniRef50_UPI0001AF502E phage transcriptional regulator, AlpA n=1 Tax=Pseudomonas syringae pv. oryzae str. 1_6 RepID=UPI0001AF502E Length = 80 Score = 40.4 bits (93), Expect = 0.015, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 6/60 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 RILRLP V + G RA IY ++ FP+ LG ++VGW +++W+ R Sbjct: 13 RILRLPEVQVRIGFKRAHIYSLMS------QGLFPRSVPLGPRAVGWDSLAVEKWIEDRI 66 >UniRef50_UPI0000E0FEEA phage transcriptional regulator, AlpA n=1 Tax=Glaciecola sp. HTCC2999 RepID=UPI0000E0FEEA Length = 71 Score = 40.4 bits (93), Expect = 0.017, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 37/58 (63%), Gaps = 8/58 (13%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRML--GVKSVGWIEAEIDEWL 63 RILR+ V +KTG++++ IY + ++ FP+ L G +VGW+E++I++W+ Sbjct: 8 RILRINDVAKKTGLSKSYIYALV------HNGQFPQSIRLVKGGTAVGWLESDIEQWI 59 >UniRef50_A4JAZ2 Phage transcriptional regulator, AlpA n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JAZ2_BURVG Length = 68 Score = 40.4 bits (93), Expect = 0.018, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 6/61 (9%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 R++R+ ++ + G++++ IY + FPK LG ++VGW+E++I+ W+ + Sbjct: 10 RVVRMRCLLGRVGLSKSEIYRRIQA------GAFPKPIPLGTRAVGWLESDINAWIDTQA 63 Query: 68 K 68 K Sbjct: 64 K 64 >UniRef50_A9FCF4 DNA-binding protein, putative n=6 Tax=Rhodobacteraceae RepID=A9FCF4_9RHOB Length = 65 Score = 40.4 bits (93), Expect = 0.020, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 6/65 (9%) Query: 2 NNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDE 61 N + A + R P V + TG++R TIY ++ FP+ + K+V W E+ I E Sbjct: 4 NTQMAEKHYRRPEVEELTGLSRTTIYAMMS------RGEFPRPVRMTRKAVAWPESAIAE 57 Query: 62 WLSQR 66 WLS R Sbjct: 58 WLSSR 62 >UniRef50_A1U0S6 Phage transcriptional regulator, AlpA n=2 Tax=Gammaproteobacteria RepID=A1U0S6_MARAV Length = 81 Score = 40.0 bits (92), Expect = 0.020, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 8/61 (13%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVK--SVGWIEAEIDEWLSQR 66 I+RL +++TG++R+T+YD FPK L + +VGW+E+E++ W+ R Sbjct: 8 IIRLAETLRRTGLSRSTLYDLQTA------GDFPKSIKLTRQGSAVGWLESEVNAWIEAR 61 Query: 67 C 67 Sbjct: 62 V 62 >UniRef50_B0TKK3 Phage transcriptional regulator, AlpA n=1 Tax=Shewanella halifaxensis HAW-EB4 RepID=B0TKK3_SHEHH Length = 71 Score = 40.0 bits (92), Expect = 0.022, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 6/58 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 ++++ VIQ T ++R+TIY +N + FPK L +SV W+ E+++W+ + Sbjct: 13 LIKIKEVIQMTSLSRSTIYTKMNQQD------FPKSISLSSRSVVWVRKELEDWIQNK 64 >UniRef50_A1VSK2 Phage transcriptional regulator, AlpA n=1 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VSK2_POLNA Length = 74 Score = 40.0 bits (92), Expect = 0.023, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 6/63 (9%) Query: 4 RSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 +A I R V++K G++ T+ W+ D FP+ + LG ++VGW+ ++ WL Sbjct: 6 HAAPLIYRKKVVLEKFGISETTLRRWMQ------DEGFPRPKQLGPRAVGWVVDQVGAWL 59 Query: 64 SQR 66 +R Sbjct: 60 EKR 62 >UniRef50_A7ZI04 Prophage CP4-57 regulatory protein n=1 Tax=Escherichia coli E24377A RepID=A7ZI04_ECO24 Length = 72 Score = 40.0 bits (92), Expect = 0.023, Method: Compositional matrix adjust. Identities = 16/58 (27%), Positives = 36/58 (62%), Gaps = 6/58 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 R++R+ +I+ ++R T++ W+N + FP+ R + +++GW ++ +EWLS+ Sbjct: 19 RLIRINHMIELLAVSRTTLWRWVN------EGVFPEPRKIQGRTLGWTASQYEEWLSK 70 >UniRef50_Q2SPA0 Predicted transcriptional regulator n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SPA0_HAHCH Length = 71 Score = 40.0 bits (92), Expect = 0.024, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 6/54 (11%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEW 62 I R+ + TG++R+TIY+ + +FP LG ++VGW E+ +D+W Sbjct: 5 IFRIKETTKLTGLSRSTIYERVA------SGSFPPPVSLGHRAVGWFESSLDDW 52 >UniRef50_B3Q046 Putative uncharacterized protein n=1 Tax=Rhizobium etli CIAT 652 RepID=B3Q046_RHIE6 Length = 68 Score = 39.7 bits (91), Expect = 0.027, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 6/62 (9%) Query: 6 AVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 A +IL + VI +TG++R T+Y ++ + FP+ L + VGW E ++D W+ Sbjct: 5 ASKILPIEEVIDRTGLSRRTLYQEIS------EGRFPRPVQLTSRRVGWPENDVDTWIDH 58 Query: 66 RC 67 + Sbjct: 59 KI 60 >UniRef50_A9IRW1 Strain DSM 12804, complete genome n=1 Tax=Bordetella petrii DSM 12804 RepID=A9IRW1_BORPD Length = 67 Score = 39.7 bits (91), Expect = 0.031, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 6/61 (9%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 +ILR+ V + TG++R IY N K FP++ LG +SVGW+ ++++ W R Sbjct: 6 QILRITDVTRITGLSRPAIY--YNVKR----GLFPRQIQLGPRSVGWLASDVEAWFQSRI 59 Query: 68 K 68 Sbjct: 60 S 60 >UniRef50_Q74H30 Putative uncharacterized protein n=1 Tax=Geobacter sulfurreducens RepID=Q74H30_GEOSL Length = 73 Score = 39.7 bits (91), Expect = 0.033, Method: Compositional matrix adjust. Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 6/59 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 R++RL V+ G + AT++ W FP++R +G+++V W E++EW R Sbjct: 3 RMIRLAEVLSVAGCSEATLWRWERA------GLFPRRRRIGLRAVAWDSEEVEEWRRTR 55 >UniRef50_Q2T3P9 Prophage regulatory protein AlpA family protein n=3 Tax=pseudomallei group RepID=Q2T3P9_BURTA Length = 72 Score = 39.3 bits (90), Expect = 0.038, Method: Compositional matrix adjust. Identities = 16/56 (28%), Positives = 35/56 (62%), Gaps = 6/56 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 RI+R+PA++++ G++ + + + TFP+ LG +++G++ A++D WL Sbjct: 14 RIVRMPALLERVGLSESEVRRRIK------AGTFPRPVKLGPRAIGFVVADVDAWL 63 >UniRef50_C4GIW5 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GIW5_9NEIS Length = 74 Score = 39.3 bits (90), Expect = 0.043, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 1/58 (1%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLG-VKSVGWIEAEIDEWLS 64 +ILR G + AT++ NP + R+DA+FPK LG ++VG ++ ++D W++ Sbjct: 4 KILRPKQAAAYCGFSVATLWAKTNPNNRRHDASFPKPFKLGNGRAVGILKDDLDAWIA 61 >UniRef50_A8AM43 Putative uncharacterized protein n=4 Tax=Enterobacteriaceae RepID=A8AM43_CITK8 Length = 66 Score = 38.9 bits (89), Expect = 0.045, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 6/62 (9%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 R LRL V K G ++ IY + + FP L + V W+E+E+D W+ QR Sbjct: 7 RFLRLRQVEDKIGFGKSWIYRQIQLQQ------FPPFIRLNSRHVAWLESEVDAWIHQRI 60 Query: 68 KL 69 +L Sbjct: 61 RL 62 >UniRef50_B1LN65 Transcriptional regulator, AlpA family n=8 Tax=Escherichia RepID=B1LN65_ECOSM Length = 74 Score = 38.9 bits (89), Expect = 0.047, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 6/62 (9%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 R++R + TG++R T Y+ L K FP +R LG +SVGW+ +E+ +W+ R Sbjct: 13 RVIREDECRKLTGVSRTTRYE-LEKK-----GGFPSRRNLGGRSVGWLLSEVMDWVQSRD 66 Query: 68 KL 69 ++ Sbjct: 67 RV 68 >UniRef50_A6VCA3 Transcriptional regulator, AlpA family n=2 Tax=Pseudomonas RepID=A6VCA3_PSEA7 Length = 70 Score = 38.9 bits (89), Expect = 0.057, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 4/60 (6%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 ++ILR AV +K G I D + R D TFP + + VGW+E EID WL Q+ Sbjct: 1 MQILRRKAVCEKLG----GINDVTLWRITRDDPTFPASIQINKRVVGWLEHEIDAWLGQK 56 >UniRef50_B1Y1X4 Phage transcriptional regulator, AlpA n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y1X4_LEPCP Length = 75 Score = 38.5 bits (88), Expect = 0.073, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 6/58 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 LR+ AV + TG+ R+TIY + +A FP L +++ W A++D W ++R Sbjct: 19 FLRIGAVTKLTGLGRSTIYRLMA------EAKFPTPVRLSSRAIAWRRADLDRWSAER 70 >UniRef50_Q47ZW9 Putative uncharacterized protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47ZW9_COLP3 Length = 103 Score = 38.1 bits (87), Expect = 0.098, Method: Compositional matrix adjust. Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 6/57 (10%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 +R++RL V+ +G+ R++IY ++ + FP LG +++ W +E++EW+ Sbjct: 1 MRLIRLKEVMSISGLGRSSIYKFME------EGRFPMSISLGERAIAWEVSEVEEWV 51 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P33997 Prophage CP4-57 regulatory protein alpA n=5 Tax=... 105 5e-22 UniRef50_B2K8D1 Phage transcriptional regulator, AlpA n=2 Tax=Ye... 90 2e-17 UniRef50_D0T2W6 Predicted protein n=2 Tax=Acinetobacter radiores... 90 2e-17 UniRef50_Q0HJK3 Phage transcriptional regulator, AlpA n=2 Tax=Sh... 88 7e-17 UniRef50_Q1RDI7 Possible prophage regulatory protein n=15 Tax=En... 88 8e-17 UniRef50_D1P3D5 Conserved domain protein n=1 Tax=Providencia rus... 87 1e-16 UniRef50_C4L905 Phage transcriptional regulator, AlpA n=1 Tax=To... 87 1e-16 UniRef50_B9THH9 Putative uncharacterized protein n=1 Tax=Ricinus... 86 3e-16 UniRef50_Q3SF41 Possible Transcriptional Regulator n=2 Tax=Thiob... 86 3e-16 UniRef50_A4G2Z1 Prophage CP4-57 regulatory protein alpA n=2 Tax=... 85 5e-16 UniRef50_Q8Z105 Phage DNA binding protein n=5 Tax=Enterobacteria... 83 2e-15 UniRef50_Q4FTD7 Possible prophage regulatory protein AlpA n=5 Ta... 83 3e-15 UniRef50_B9B2T4 Conserved domain protein n=1 Tax=Burkholderia mu... 82 5e-15 UniRef50_Q7P0B9 Probable prophage regulatory protein n=7 Tax=Pro... 82 7e-15 UniRef50_Q7MJB2 Predicted transcriptional regulator n=47 Tax=Vib... 81 7e-15 UniRef50_D0W4G8 Conserved domain protein n=1 Tax=Neisseria ciner... 81 9e-15 UniRef50_C6RQK1 Phage transcriptional regulator, AlpA n=3 Tax=Ac... 81 1e-14 UniRef50_B4S218 Phage transcriptional regulator, AlpA n=2 Tax=Ga... 80 2e-14 UniRef50_B7SYF9 Gp29 n=2 Tax=root RepID=B7SYF9_9CAUD 80 2e-14 UniRef50_Q1Q868 Phage transcriptional regulator, AlpA n=1 Tax=Ps... 80 2e-14 UniRef50_A0K329 Phage transcriptional regulator, AlpA n=1 Tax=Bu... 79 4e-14 UniRef50_P12552 Uncharacterized protein ORF88 n=40 Tax=root RepI... 79 4e-14 UniRef50_C6AQQ2 Transcriptional regulator, AlpA family n=6 Tax=P... 78 6e-14 UniRef50_Q46Z77 Prophage CP4-57 regulatory n=2 Tax=Burkholderiac... 78 7e-14 UniRef50_A4SQA2 Prophage regulatory protein n=1 Tax=Aeromonas sa... 77 1e-13 UniRef50_UPI0001BCF977 putative prophage CP4-57 regulatory prote... 77 2e-13 UniRef50_B2JL38 Phage transcriptional regulator, AlpA n=2 Tax=Pr... 76 3e-13 UniRef50_A0Q3W1 Regulatory protein, AlpA family n=6 Tax=Francise... 76 3e-13 UniRef50_B0U0W1 Phage transcriptional regulator, AlpA n=3 Tax=Ga... 76 3e-13 UniRef50_A1WW70 Phage transcriptional regulator, AlpA n=2 Tax=Ga... 76 3e-13 UniRef50_C6CIY7 Phage transcriptional regulator, AlpA n=3 Tax=Pr... 76 4e-13 UniRef50_A5UG77 Predicted transcriptional regulator n=1 Tax=Haem... 76 4e-13 UniRef50_A3P008 Prophage CP4-57 regulatory protein (AlpA) n=4 Ta... 76 4e-13 UniRef50_A5W5Z3 Phage transcriptional regulator, AlpA n=2 Tax=Ps... 76 5e-13 UniRef50_Q2NDG2 Putative uncharacterized protein n=1 Tax=Erythro... 75 5e-13 UniRef50_Q46YP9 Prophage CP4-57 regulatory n=1 Tax=Ralstonia eut... 75 6e-13 UniRef50_C1DSG0 Prophage CP4-57 regulatory, AlpA-like protein n=... 75 8e-13 UniRef50_C6S833 Putative prophage regulatory protein n=4 Tax=Nei... 75 8e-13 UniRef50_A4TK05 Transcriptional regulator n=21 Tax=Enterobacteri... 75 9e-13 UniRef50_A1SRJ5 Phage transcriptional regulator, AlpA n=1 Tax=Ps... 75 9e-13 UniRef50_Q0HVT5 Phage transcriptional regulator, AlpA n=14 Tax=c... 75 9e-13 UniRef50_Q0HGG2 Phage transcriptional regulator, AlpA n=3 Tax=Ba... 75 1e-12 UniRef50_D2TNW8 Putative uncharacterized protein n=1 Tax=Citroba... 74 2e-12 UniRef50_A3Z0Z5 DNA-binding protein, putative n=2 Tax=Synechococ... 74 2e-12 UniRef50_A4SPW1 Probable prophage regulatory protein n=1 Tax=Aer... 73 2e-12 UniRef50_Q0I4F9 Phage transcriptional regulator, AlpA n=2 Tax=Ba... 73 3e-12 UniRef50_C6DCW7 Phage transcriptional regulator, AlpA n=3 Tax=Pe... 73 3e-12 UniRef50_Q1RPF9 ECs3513 protein n=4 Tax=Escherichia RepID=Q1RPF9... 73 3e-12 UniRef50_D0M6T1 Phage transcriptional regulator AlpA n=1 Tax=Vib... 72 5e-12 UniRef50_C0DTI2 Putative uncharacterized protein n=1 Tax=Eikenel... 72 6e-12 UniRef50_Q5QX32 Prophage CP4-57 regulatory protein-like protein ... 72 6e-12 UniRef50_C2LJX4 Possible phage transcriptional regulator n=1 Tax... 72 7e-12 UniRef50_C4L9N9 Phage transcriptional regulator, AlpA n=11 Tax=P... 71 9e-12 UniRef50_A1TJN4 Phage transcriptional regulator, AlpA n=28 Tax=P... 71 1e-11 UniRef50_Q2NBH3 Predicted transcriptional regulator n=4 Tax=Sphi... 71 1e-11 UniRef50_D0BWH4 Phage protein (Fragment) n=1 Tax=Acinetobacter s... 70 3e-11 UniRef50_D2NKU9 Putative transcriptional regulator n=1 Tax=Esche... 70 3e-11 UniRef50_C9PEM5 Putative uncharacterized protein n=1 Tax=Vibrio ... 69 4e-11 UniRef50_B2JC70 Phage transcriptional regulator, AlpA n=2 Tax=Bu... 69 4e-11 UniRef50_A4TNW0 Transcriptional regulator n=18 Tax=Enterobacteri... 68 8e-11 UniRef50_B5EWU9 Conserved domain protein n=61 Tax=Enterobacteria... 68 1e-10 UniRef50_D0J4J3 Phage transcriptional regulator, AlpA n=1 Tax=Co... 66 2e-10 UniRef50_D0KY14 Phage transcriptional regulator, AlpA n=1 Tax=Ha... 66 3e-10 UniRef50_Q28S53 Phage transcriptional regulator, AlpA n=23 Tax=A... 65 1e-09 UniRef50_C0VI45 Putative uncharacterized protein n=1 Tax=Acineto... 63 2e-09 Sequences not found previously or not previously below threshold: UniRef50_B5SEZ3 Bacteriophage dna-binding protein n=4 Tax=Proteo... 75 8e-13 UniRef50_A1TYD2 Phage transcriptional regulator, AlpA n=3 Tax=Pr... 73 4e-12 UniRef50_Q13HX3 Phage transcriptional regulator, AlpA n=5 Tax=Pr... 71 1e-11 UniRef50_A4CWC5 Predicted transcriptional regulator n=1 Tax=Syne... 70 3e-11 UniRef50_UPI0000E0FEEA phage transcriptional regulator, AlpA n=1... 70 3e-11 UniRef50_UPI0001AF502E phage transcriptional regulator, AlpA n=1... 68 7e-11 UniRef50_B8L4N0 Putative transcriptional regulator n=1 Tax=Steno... 68 9e-11 UniRef50_Q47ZW9 Putative uncharacterized protein n=1 Tax=Colwell... 67 2e-10 UniRef50_A1U0S6 Phage transcriptional regulator, AlpA n=2 Tax=Ga... 67 2e-10 UniRef50_A3NM12 Prophage CP4-57 regulatory protein (AlpA) n=10 T... 67 2e-10 UniRef50_A1SV81 Phage transcriptional regulator, AlpA n=4 Tax=Ga... 67 2e-10 UniRef50_A9FCF4 DNA-binding protein, putative n=6 Tax=Rhodobacte... 67 2e-10 UniRef50_A4JAZ2 Phage transcriptional regulator, AlpA n=1 Tax=Bu... 66 2e-10 UniRef50_C4GIW5 Putative uncharacterized protein n=1 Tax=Kingell... 66 3e-10 UniRef50_D1UHG7 Phage transcriptional regulator, AlpA n=1 Tax=Bu... 66 3e-10 UniRef50_B0TKK3 Phage transcriptional regulator, AlpA n=1 Tax=Sh... 66 4e-10 UniRef50_A9IRW1 Strain DSM 12804, complete genome n=1 Tax=Bordet... 65 5e-10 UniRef50_A3VKJ6 DNA-binding protein, putative n=2 Tax=Proteobact... 65 5e-10 UniRef50_C8R2I6 Phage transcriptional regulator, AlpA n=1 Tax=De... 65 7e-10 UniRef50_A3JW32 Prophage CP4-57 regulatory n=1 Tax=Rhodobacteral... 64 1e-09 UniRef50_Q2SPA0 Predicted transcriptional regulator n=1 Tax=Hahe... 64 1e-09 UniRef50_B6AMX6 Phage DNA binding protein n=2 Tax=Bacteria RepID... 64 2e-09 UniRef50_B3Q046 Putative uncharacterized protein n=1 Tax=Rhizobi... 64 2e-09 UniRef50_B4RZR3 Phage transcriptional regulator, AlpA n=1 Tax=Al... 63 2e-09 UniRef50_B7VPA4 Predicted transcriptional regulator n=31 Tax=Gam... 63 2e-09 UniRef50_A7JWM9 Possible bacteriophage transcriptional regulator... 63 3e-09 UniRef50_D1NFX2 Prophage CP4-57 regulatory protein n=1 Tax=Haemo... 63 3e-09 UniRef50_C2LH22 Putative uncharacterized protein n=1 Tax=Proteus... 63 3e-09 UniRef50_A8AM43 Putative uncharacterized protein n=4 Tax=Enterob... 63 4e-09 UniRef50_B1SZZ6 Phage transcriptional regulator, AlpA n=1 Tax=Bu... 63 4e-09 UniRef50_UPI00016ADB9E regulatory protein, AlpA family n=3 Tax=p... 63 4e-09 UniRef50_D1TJS7 Putative uncharacterized protein n=1 Tax=Burkhol... 62 5e-09 UniRef50_A9D684 Phage transcriptional regulator, AlpA n=2 Tax=Al... 62 5e-09 UniRef50_C1DSG1 Prophage CP4-57 regulatory , AlpA-like protein n... 62 6e-09 UniRef50_B0RRY0 Putative uncharacterized protein n=2 Tax=Xanthom... 61 8e-09 UniRef50_C6TZS2 Prophage CP4-57 regulatory protein (AlpA) n=1 Ta... 61 8e-09 UniRef50_B0KMB7 Phage transcriptional regulator, AlpA n=1 Tax=Ps... 61 8e-09 UniRef50_Q2YAI6 Phage transcriptional regulator, AlpA n=1 Tax=Ni... 61 9e-09 UniRef50_A4JR07 Phage transcriptional regulator, AlpA n=6 Tax=Bu... 61 1e-08 UniRef50_B1JDS6 Phage transcriptional regulator, AlpA n=2 Tax=Ps... 61 1e-08 UniRef50_A3UV40 Transcriptional regulator, putative n=2 Tax=Prot... 60 2e-08 UniRef50_Q2T3P9 Prophage regulatory protein AlpA family protein ... 60 3e-08 UniRef50_B1Y1X4 Phage transcriptional regulator, AlpA n=1 Tax=Le... 60 3e-08 UniRef50_D2NHT3 Hypothetical phage protein n=1 Tax=Escherichia c... 59 4e-08 UniRef50_D0M3I3 Predicted transcriptional regulator n=1 Tax=Vibr... 59 4e-08 UniRef50_A6B241 Conserved domain protein n=2 Tax=Vibrio parahaem... 59 5e-08 UniRef50_A2PQ69 Prophage CP4-57 regulatory protein (AlpA) n=1 Ta... 58 6e-08 UniRef50_C4KAH0 Phage transcriptional regulator, AlpA n=1 Tax=Th... 58 7e-08 UniRef50_C8QZM7 Phage transcriptional regulator, AlpA n=1 Tax=De... 58 8e-08 UniRef50_Q6AR72 Putative uncharacterized protein n=1 Tax=Desulfo... 58 9e-08 UniRef50_C5CXN0 Phage transcriptional regulator, AlpA n=2 Tax=Va... 58 1e-07 UniRef50_B2PZ48 Putative uncharacterized protein n=2 Tax=Enterob... 58 1e-07 UniRef50_Q0A9S3 Phage transcriptional regulator, AlpA n=1 Tax=Al... 57 2e-07 UniRef50_A6Q4M7 Transcriptional regulator n=1 Tax=Nitratiruptor ... 57 2e-07 UniRef50_A0Q4W2 Regulatory protein, AlpA family n=3 Tax=Francise... 57 2e-07 UniRef50_Q75SW7 Putative uncharacterized protein n=1 Tax=Escheri... 56 3e-07 UniRef50_A9IES4 Predicted transcriptional regulator n=1 Tax=Bord... 56 3e-07 UniRef50_D0M1L9 Predicted transcriptional regulator n=1 Tax=Vibr... 56 3e-07 UniRef50_C6MJ06 Phage transcriptional regulator, AlpA n=1 Tax=Ni... 56 3e-07 UniRef50_D0J4D1 Phage transcriptional regulator, AlpA n=1 Tax=Co... 56 3e-07 UniRef50_Q1QLR6 Phage transcriptional regulator, AlpA n=1 Tax=Ni... 56 4e-07 UniRef50_A4XZH5 Phage transcriptional regulator, AlpA n=3 Tax=Ps... 56 5e-07 UniRef50_Q2Y6Z7 Phage transcriptional regulator, AlpA n=6 Tax=Pr... 56 5e-07 UniRef50_B5J7B4 Transcriptional regulator, AlpA family n=1 Tax=O... 55 5e-07 UniRef50_D0Z915 Putative uncharacterized protein n=1 Tax=Edwards... 55 6e-07 UniRef50_D2MIG9 Prophage CP4-57 regulatory n=2 Tax=Candidatus Po... 55 8e-07 UniRef50_D0W4G6 Conserved domain protein n=1 Tax=Neisseria ciner... 55 8e-07 UniRef50_B1LN65 Transcriptional regulator, AlpA family n=8 Tax=E... 55 8e-07 UniRef50_UPI00019078FB hypothetical protein RetlG_16275 n=1 Tax=... 55 8e-07 UniRef50_A6VCA3 Transcriptional regulator, AlpA family n=2 Tax=P... 55 8e-07 UniRef50_B6R1G6 Putative regulatory protein encoded in prophage ... 55 9e-07 UniRef50_Q63RT8 Putative uncharacterized protein n=1 Tax=Burkhol... 55 1e-06 UniRef50_C6XEE2 Phage transcriptional regulator, AlpA n=1 Tax=Me... 55 1e-06 UniRef50_B0RUQ9 Hypothetical 9.7 kDa protein n=1 Tax=Xanthomonas... 55 1e-06 UniRef50_B5F477 Conserved domain protein n=2 Tax=Salmonella ente... 54 1e-06 UniRef50_Q0F0R8 Putative uncharacterized protein n=1 Tax=Maripro... 54 1e-06 UniRef50_Q1NGR7 Putative uncharacterized protein n=1 Tax=Sphingo... 54 2e-06 UniRef50_Q13ZB8 Phage transcriptional regulator, AlpA n=1 Tax=Bu... 54 2e-06 UniRef50_C0GR58 Phage transcriptional regulator, AlpA n=1 Tax=De... 54 2e-06 UniRef50_Q8DF51 Predicted phage-specific transcriptional regulat... 53 2e-06 UniRef50_A1W718 Phage transcriptional regulator, AlpA n=1 Tax=Ac... 53 2e-06 UniRef50_C6DZ79 Phage transcriptional regulator, AlpA n=1 Tax=Ge... 53 2e-06 UniRef50_B2JD58 Phage transcriptional regulator, AlpA n=1 Tax=Bu... 53 3e-06 UniRef50_A7MSH2 Putative uncharacterized protein n=1 Tax=Vibrio ... 53 3e-06 UniRef50_C8X398 Phage transcriptional regulator, AlpA n=1 Tax=De... 53 3e-06 UniRef50_A1Z2Q5 Putative uncharacterized protein n=10 Tax=Entero... 53 3e-06 UniRef50_Q1LNC5 Phage transcriptional regulator, AlpA n=14 Tax=P... 53 3e-06 UniRef50_C5V761 Phage transcriptional regulator, AlpA n=1 Tax=Ga... 53 3e-06 UniRef50_Q3SQP6 Prophage CP4-57 regulatory n=4 Tax=Alphaproteoba... 53 3e-06 UniRef50_A1TSI2 Phage transcriptional regulator, AlpA n=1 Tax=Ac... 53 4e-06 UniRef50_B8KK13 Transcriptional regulator, AlpA family n=3 Tax=G... 53 4e-06 UniRef50_A1VSK2 Phage transcriptional regulator, AlpA n=1 Tax=Po... 52 5e-06 UniRef50_A2CBA2 Predicted transcriptional regulator n=3 Tax=Proc... 52 6e-06 UniRef50_B5N8F3 Conserved domain protein n=1 Tax=Salmonella ente... 52 6e-06 UniRef50_C5CKX5 Phage transcriptional regulator, AlpA n=1 Tax=Va... 51 8e-06 UniRef50_Q47DU8 Prophage CP4-57 regulatory n=2 Tax=Dechloromonas... 51 1e-05 UniRef50_Q7U5P1 Possible transcription regulator n=2 Tax=Synecho... 51 1e-05 UniRef50_A7ZI04 Prophage CP4-57 regulatory protein n=1 Tax=Esche... 51 1e-05 UniRef50_D2LHF0 Phage transcriptional regulator, AlpA n=1 Tax=Rh... 51 1e-05 UniRef50_A9BBH2 Predicted transcriptional regulator n=1 Tax=Proc... 51 1e-05 UniRef50_A1SRJ4 Phage transcriptional regulator, AlpA n=1 Tax=Ps... 50 2e-05 UniRef50_B8K6F3 Transcriptional regulator, AlpA family n=2 Tax=G... 50 2e-05 UniRef50_B6XJ47 Putative uncharacterized protein n=1 Tax=Provide... 50 3e-05 UniRef50_B0UVF0 Phage transcriptional regulator, AlpA n=4 Tax=Pa... 50 3e-05 UniRef50_A7HPY0 Phage transcriptional regulator, AlpA n=2 Tax=Al... 50 4e-05 UniRef50_Q98MP9 Mll0486 protein n=1 Tax=Mesorhizobium loti RepID... 49 5e-05 UniRef50_A7FES1 AlpA family protein n=29 Tax=Enterobacteriaceae ... 49 5e-05 UniRef50_Q21H24 Phage transcriptional regulator, AlpA n=1 Tax=Sa... 49 5e-05 UniRef50_Q74H30 Putative uncharacterized protein n=1 Tax=Geobact... 49 6e-05 UniRef50_A1W8X8 Phage transcriptional regulator, AlpA n=26 Tax=P... 49 6e-05 UniRef50_A6TCN1 Putative uncharacterized protein n=9 Tax=Enterob... 49 6e-05 UniRef50_Q0TV65 Phage AlpA family protein n=1 Tax=Thiomicrospira... 49 6e-05 UniRef50_C7I2T3 Phage transcriptional regulator, AlpA n=1 Tax=Th... 48 7e-05 UniRef50_B0KSV2 Phage transcriptional regulator, AlpA n=1 Tax=Ps... 48 8e-05 UniRef50_B8L8F8 Transcriptional regulator, AlpA family n=1 Tax=S... 48 9e-05 UniRef50_D2TST7 Puative transcriptional regulator n=77 Tax=Enter... 48 9e-05 UniRef50_B2JS19 Phage transcriptional regulator, AlpA n=1 Tax=Bu... 48 9e-05 UniRef50_Q0C1G9 Prophage CP4-57 regulatory protein AlpA family p... 48 1e-04 UniRef50_B6JEJ7 Conserved domain protein n=1 Tax=Oligotropha car... 48 1e-04 UniRef50_A3QCD1 Phage transcriptional regulator, AlpA n=1 Tax=Sh... 48 1e-04 UniRef50_A4SRW4 Putative uncharacterized protein n=1 Tax=Aeromon... 47 1e-04 UniRef50_D0FM12 Prophage CP4-57 regulatory protein n=2 Tax=Aggre... 47 2e-04 UniRef50_A7JWN4 Possible bacteriophage transcriptional regulator... 47 2e-04 UniRef50_B0T8K3 Phage transcriptional regulator, AlpA n=6 Tax=Al... 47 2e-04 UniRef50_D2UDR2 Putative regulatory protein, alpa family n=1 Tax... 47 2e-04 UniRef50_A3LAG5 Putative uncharacterized protein n=1 Tax=Pseudom... 47 2e-04 UniRef50_C5BER2 Phage transcriptional regulator, AlpA n=1 Tax=Ed... 47 2e-04 UniRef50_Q21UK9 Phage transcriptional regulator, AlpA n=2 Tax=Pr... 47 2e-04 UniRef50_A3WKQ1 DNA-binding protein, putative n=1 Tax=Idiomarina... 47 2e-04 UniRef50_Q2NDL4 Putative uncharacterized protein n=1 Tax=Erythro... 46 3e-04 UniRef50_A1K761 Putative uncharacterized protein n=1 Tax=Azoarcu... 46 3e-04 UniRef50_B4W815 Transcriptional regulator, AlpA family n=1 Tax=B... 46 4e-04 UniRef50_C6C8I1 Phage transcriptional regulator, AlpA n=11 Tax=E... 46 4e-04 UniRef50_UPI00016A8C0B phage transcriptional regulator, AlpA n=1... 46 4e-04 UniRef50_B3E9V0 Phage transcriptional regulator, AlpA n=1 Tax=Ge... 46 4e-04 UniRef50_A5F3R9 Phage transcriptional regulator, AlpA n=5 Tax=Vi... 46 4e-04 UniRef50_Q1YTR0 Putative uncharacterized protein n=2 Tax=gamma p... 46 4e-04 UniRef50_C6E2B8 Phage transcriptional regulator, AlpA n=1 Tax=Ge... 46 4e-04 UniRef50_UPI0001AF1863 hypothetical protein SghaA1_28044 n=1 Tax... 46 5e-04 UniRef50_B2U4Z1 Prophage CP4-57 regulatory protein (AlpA) n=2 Ta... 46 5e-04 UniRef50_D2U094 Phage transcriptional regulator n=1 Tax=Arsenoph... 45 6e-04 UniRef50_B9MGX1 Phage transcriptional regulator, AlpA n=1 Tax=Di... 45 8e-04 UniRef50_B0QSY9 Putative uncharacterized protein n=1 Tax=Haemoph... 45 8e-04 UniRef50_A7FCS5 AlpA family protein n=8 Tax=Enterobacteriaceae R... 45 9e-04 UniRef50_Q0HSR4 Phage transcriptional regulator, AlpA n=1 Tax=Sh... 44 0.001 UniRef50_A9C2W4 Phage transcriptional regulator, AlpA n=1 Tax=De... 44 0.001 UniRef50_B4SNK5 Phage transcriptional regulator, AlpA n=1 Tax=St... 44 0.002 UniRef50_B3IEH8 Transcriptional regulator, AlpA family n=2 Tax=E... 44 0.002 UniRef50_B9MIK9 Phage transcriptional regulator, AlpA n=1 Tax=Di... 44 0.002 UniRef50_Q89JN8 Blr5245 protein n=1 Tax=Bradyrhizobium japonicum... 44 0.002 UniRef50_B7UGV1 Predicted protein n=2 Tax=Escherichia RepID=B7UG... 43 0.002 UniRef50_D0SV87 Predicted protein n=1 Tax=Acinetobacter lwoffii ... 43 0.002 UniRef50_D2QCK8 Phage transcriptional regulator, AlpA n=1 Tax=Sp... 43 0.002 UniRef50_B2RED9 Putative bacteriophage DNA-binding transcription... 43 0.002 UniRef50_A1W680 Phage transcriptional regulator, AlpA n=2 Tax=Ac... 43 0.002 UniRef50_B8J053 Phage transcriptional regulator, AlpA n=1 Tax=De... 43 0.002 UniRef50_Q0AAZ5 Phage transcriptional regulator, AlpA n=1 Tax=Al... 43 0.003 UniRef50_C6E131 Phage transcriptional regulator, AlpA n=1 Tax=Ge... 43 0.003 UniRef50_C0VMY7 Putative uncharacterized protein n=1 Tax=Acineto... 43 0.003 UniRef50_Q8EJS6 DNA-binding protein, putative n=2 Tax=Shewanella... 43 0.003 UniRef50_C7BGF0 Transcriptional regulator gp34 n=1 Tax=Burkholde... 43 0.003 UniRef50_Q5P091 Putative uncharacterized protein n=1 Tax=Aromato... 43 0.003 UniRef50_A3W5U3 Putative uncharacterized protein n=1 Tax=Roseova... 43 0.004 UniRef50_B3GXK5 Putative uncharacterized protein n=2 Tax=Pasteur... 43 0.004 UniRef50_B1JMJ2 Phage transcriptional regulator, AlpA n=5 Tax=En... 42 0.005 UniRef50_Q2CB88 Putative uncharacterized protein n=1 Tax=Oceanic... 42 0.005 UniRef50_B1JQY2 Phage transcriptional regulator, AlpA n=1 Tax=Ye... 42 0.005 UniRef50_A3NTN9 Prophage CP4-57 regulatory protein (AlpA) n=4 Ta... 42 0.006 UniRef50_Q2SXA4 Prophage CP4-57 regulatory protein (AlpA) family... 42 0.007 UniRef50_C4UMX3 Prophage CP4-57 regulatory protein AlpA n=3 Tax=... 42 0.007 UniRef50_A9F5F5 Putative uncharacterized protein n=1 Tax=Phaeoba... 42 0.007 UniRef50_A1SV80 Phage transcriptional regulator, AlpA n=1 Tax=Ps... 41 0.008 UniRef50_B1EIE3 Conserved domain protein n=1 Tax=Escherichia alb... 41 0.010 UniRef50_A5ZFJ6 Putative uncharacterized protein n=1 Tax=Bactero... 41 0.010 UniRef50_B8DSS4 Putative uncharacterized protein n=4 Tax=Bifidob... 41 0.011 UniRef50_A4XY14 Phage transcriptional regulator, AlpA n=10 Tax=P... 41 0.011 UniRef50_Q7NRD0 Putative uncharacterized protein n=1 Tax=Chromob... 41 0.012 UniRef50_A1RET4 Phage transcriptional regulator, AlpA n=2 Tax=Sh... 41 0.012 UniRef50_Q0C6J1 Putative uncharacterized protein n=1 Tax=Pelobac... 41 0.014 UniRef50_Q0K8U8 Putative uncharacterized protein h16_A2485 n=1 T... 41 0.016 UniRef50_C6CP56 Phage transcriptional regulator, AlpA n=4 Tax=En... 41 0.016 UniRef50_UPI0001BCF8F6 hypothetical protein COK_1269 n=1 Tax=Man... 40 0.017 UniRef50_A8LEW6 Phage transcriptional regulator, AlpA n=1 Tax=Fr... 40 0.018 UniRef50_C6XNR9 Phage transcriptional regulator, AlpA n=1 Tax=Hi... 40 0.018 UniRef50_B6BP04 Transcriptional regulator, AlpA family n=1 Tax=C... 40 0.018 >UniRef50_P33997 Prophage CP4-57 regulatory protein alpA n=5 Tax=Enterobacteriaceae RepID=ALPA_ECOLI Length = 70 Score = 105 bits (262), Expect = 5e-22, Method: Composition-based stats. Identities = 70/70 (100%), Positives = 70/70 (100%) Query: 1 MNNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEID 60 MNNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEID Sbjct: 1 MNNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEID 60 Query: 61 EWLSQRCKLI 70 EWLSQRCKLI Sbjct: 61 EWLSQRCKLI 70 >UniRef50_B2K8D1 Phage transcriptional regulator, AlpA n=2 Tax=Yersinia RepID=B2K8D1_YERPB Length = 75 Score = 90.3 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 33/63 (52%), Positives = 51/63 (80%) Query: 6 AVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 +V+ILR+PA+++K G+ R+T+YDWL+P S R+D TFP++ LG K+VGW+E+EID W+ Sbjct: 5 SVKILRIPALVKKLGIGRSTVYDWLDPNSDRHDPTFPQRVKLGAKTVGWLESEIDTWILN 64 Query: 66 RCK 68 + K Sbjct: 65 KTK 67 >UniRef50_D0T2W6 Predicted protein n=2 Tax=Acinetobacter radioresistens RepID=D0T2W6_ACIRA Length = 73 Score = 90.3 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 30/61 (49%), Positives = 42/61 (68%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 S + +L+L VI K ++R+TIYD L+ KS RYD FPK R LG+ SV W+E E+++WL Sbjct: 9 STMCMLKLKDVINKCQISRSTIYDKLDQKSKRYDPDFPKPRKLGMNSVAWVENEVEQWLK 68 Query: 65 Q 65 Sbjct: 69 N 69 >UniRef50_Q0HJK3 Phage transcriptional regulator, AlpA n=2 Tax=Shewanella RepID=Q0HJK3_SHESM Length = 71 Score = 88.0 bits (217), Expect = 7e-17, Method: Composition-based stats. Identities = 33/65 (50%), Positives = 47/65 (72%) Query: 1 MNNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEID 60 +++ + I+RL +VI+ TG++R+TIYD NPKSPRYD TFP+K LG ++VGW EI+ Sbjct: 2 LDSNPSYSIVRLASVIKLTGLSRSTIYDKQNPKSPRYDHTFPQKVSLGPRAVGWYFGEIE 61 Query: 61 EWLSQ 65 WL Sbjct: 62 SWLKS 66 >UniRef50_Q1RDI7 Possible prophage regulatory protein n=15 Tax=Enterobacteriaceae RepID=Q1RDI7_ECOUT Length = 98 Score = 88.0 bits (217), Expect = 8e-17, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 + RILR+P + Q G++R+TIY+ +NP S YDATFP+ LG SVGW + ID+WL+ Sbjct: 10 TPSRILRMPELSQLLGISRSTIYEKMNPLSKYYDATFPRPVRLGSGSVGWRSSAIDKWLT 69 >UniRef50_D1P3D5 Conserved domain protein n=1 Tax=Providencia rustigianii DSM 4541 RepID=D1P3D5_9ENTR Length = 80 Score = 87.3 bits (215), Expect = 1e-16, Method: Composition-based stats. Identities = 28/65 (43%), Positives = 41/65 (63%) Query: 3 NRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEW 62 N +RILR+ + G++R++IY+ LNP+S YD FPK LG SVGW A +++W Sbjct: 15 NNLPIRILRMTELTVMLGISRSSIYEKLNPRSKYYDENFPKPIKLGASSVGWHYASVEKW 74 Query: 63 LSQRC 67 L+ R Sbjct: 75 LTSRM 79 >UniRef50_C4L905 Phage transcriptional regulator, AlpA n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4L905_TOLAT Length = 117 Score = 87.3 bits (215), Expect = 1e-16, Method: Composition-based stats. Identities = 25/58 (43%), Positives = 37/58 (63%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 RI+R+ ++R+TIYD LNPKSPR+D TFP+ LG ++GW ++ W+S Sbjct: 55 RIIRIKEFAAMISLSRSTIYDRLNPKSPRFDPTFPRPIKLGASAIGWHLVDVAAWISS 112 >UniRef50_B9THH9 Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9THH9_RICCO Length = 376 Score = 86.5 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 3/69 (4%) Query: 2 NNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLG---VKSVGWIEAE 58 R ++LRL V Q TG+ R++IY ++P+S YD TFP+ L +VGW E + Sbjct: 303 GGRRVGKVLRLRQVEQMTGLKRSSIYYRMDPRSRYYDPTFPRCFSLSTTESGAVGWDEEQ 362 Query: 59 IDEWLSQRC 67 ++ W++ + Sbjct: 363 VNAWVAVQV 371 >UniRef50_Q3SF41 Possible Transcriptional Regulator n=2 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SF41_THIDA Length = 98 Score = 86.1 bits (212), Expect = 3e-16, Method: Composition-based stats. Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 3/65 (4%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPR---YDATFPKKRMLGVKSVGWIEAEIDEWL 63 RILR V +TG++R++IY L R YD TFPK +G K+VGWIEAEI+ WL Sbjct: 29 TRILRRKQVEARTGLSRSSIYARLRQNPKRPGDYDPTFPKPVSVGAKAVGWIEAEIEAWL 88 Query: 64 SQRCK 68 + + + Sbjct: 89 TAQIQ 93 >UniRef50_A4G2Z1 Prophage CP4-57 regulatory protein alpA n=2 Tax=Oxalobacteraceae RepID=A4G2Z1_HERAR Length = 73 Score = 85.3 bits (210), Expect = 5e-16, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 40/60 (66%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 ++R+ + +KTG+ +++Y+ LN KS YD FPK LGV SVGWIE E+D WLS R Sbjct: 9 TNVIRIKRLKEKTGLGNSSVYNKLNFKSKYYDCDFPKPIQLGVSSVGWIEGEVDIWLSSR 68 >UniRef50_Q8Z105 Phage DNA binding protein n=5 Tax=Enterobacteriaceae RepID=Q8Z105_SALTI Length = 107 Score = 83.4 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 6/60 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 R +RLP V+ G++R+TIYD ++ ++ FPK+ LG K+V W ++EI W++ R Sbjct: 26 RFIRLPEVMHLCGLSRSTIYDLISREA------FPKQISLGGKNVAWAQSEITAWMTDRI 79 >UniRef50_Q4FTD7 Possible prophage regulatory protein AlpA n=5 Tax=Moraxellaceae RepID=Q4FTD7_PSYA2 Length = 93 Score = 83.0 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 26/60 (43%), Positives = 39/60 (65%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 ++L + V TG++R+TIY+ +N KS RYD TFPKK L V W+ +EI EW++ + Sbjct: 29 QLLNIKDVGSYTGLSRSTIYEMVNEKSDRYDPTFPKKVQLTQVRVVWVASEIAEWINNKI 88 >UniRef50_B9B2T4 Conserved domain protein n=1 Tax=Burkholderia multivorans CGD1 RepID=B9B2T4_9BURK Length = 95 Score = 82.2 bits (202), Expect = 5e-15, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 46/65 (70%), Gaps = 5/65 (7%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 +A+RILR+ ++++T ++RAT+Y + D TFPKK L V+S+G++E+E+D W++ Sbjct: 32 NALRILRIKQLVERTNLSRATLYVLMAS-----DPTFPKKIKLTVRSIGFLESEVDAWIA 86 Query: 65 QRCKL 69 R +L Sbjct: 87 ARAEL 91 >UniRef50_Q7P0B9 Probable prophage regulatory protein n=7 Tax=Proteobacteria RepID=Q7P0B9_CHRVO Length = 72 Score = 81.9 bits (201), Expect = 7e-15, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 6/65 (9%) Query: 3 NRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEW 62 +R LRLP VI G++R+++YD + +FP LG KSV W+ +EID W Sbjct: 9 TAQPLRFLRLPEVISTCGLSRSSVYDAIK------RGSFPAPVPLGGKSVAWLSSEIDVW 62 Query: 63 LSQRC 67 ++ R Sbjct: 63 MAGRI 67 >UniRef50_Q7MJB2 Predicted transcriptional regulator n=47 Tax=Vibrionaceae RepID=Q7MJB2_VIBVY Length = 73 Score = 81.5 bits (200), Expect = 7e-15, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 39/63 (61%), Gaps = 6/63 (9%) Query: 6 AVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 +R L+L V++KT ++R+ IY +N D FP+ LG +++ W+E+E+DEW+ Sbjct: 15 PMRFLKLKEVMEKTALSRSAIYRKMN------DGEFPESVSLGERAIAWVESEVDEWMEM 68 Query: 66 RCK 68 R + Sbjct: 69 RLE 71 >UniRef50_D0W4G8 Conserved domain protein n=1 Tax=Neisseria cinerea ATCC 14685 RepID=D0W4G8_NEICI Length = 86 Score = 81.1 bits (199), Expect = 9e-15, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 39/62 (62%) Query: 6 AVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 + R+LR+ V +K G+ + I+ +PK+ RYDATFPK + + W+E+E+D WLS Sbjct: 13 SQRVLRVNQVSEKVGLCVSAIWAKTSPKNARYDATFPKPFKVSANATVWLESELDAWLSA 72 Query: 66 RC 67 + Sbjct: 73 KA 74 >UniRef50_C6RQK1 Phage transcriptional regulator, AlpA n=3 Tax=Acinetobacter RepID=C6RQK1_ACIRA Length = 76 Score = 81.1 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 +I+ + V+Q T ++RA IY+ +N KS YD TFPK L +GW EI++W+ + Sbjct: 13 QIVNIKEVVQFTSISRAKIYEMINEKSKYYDPTFPKPVRLSESRIGWSAWEINQWIEDKL 72 Query: 68 K 68 + Sbjct: 73 E 73 >UniRef50_B4S218 Phage transcriptional regulator, AlpA n=2 Tax=Gammaproteobacteria RepID=B4S218_ALTMD Length = 80 Score = 80.3 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 6/59 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 RILRLP V KTG R+TIY + + FP+ +G ++VGW+E++ID+W+ R Sbjct: 19 RILRLPEVKAKTGFGRSTIYALMA------NGEFPRSIRIGARAVGWLESDIDQWIETR 71 >UniRef50_B7SYF9 Gp29 n=2 Tax=root RepID=B7SYF9_9CAUD Length = 129 Score = 79.9 bits (196), Expect = 2e-14, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 6/62 (9%) Query: 6 AVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 + +++P V ++TG+ + TIYD ++ TFP LG +VGWIEAE+D W + Sbjct: 62 PLVFIKMPEVKRRTGLGKTTIYDRISA------GTFPAPVPLGGNAVGWIEAEVDAWQAA 115 Query: 66 RC 67 R Sbjct: 116 RV 117 >UniRef50_Q1Q868 Phage transcriptional regulator, AlpA n=1 Tax=Psychrobacter cryohalolentis K5 RepID=Q1Q868_PSYCK Length = 86 Score = 79.9 bits (196), Expect = 2e-14, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 37/60 (61%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 R++ L V+ T ++ TIYD L+ +S RYD TFP++ L V W+E+EI +WL + Sbjct: 22 RMVPLKDVVYFTALSSTTIYDMLDKRSSRYDPTFPRQVKLSKGRVAWVESEITQWLESKM 81 >UniRef50_A0K329 Phage transcriptional regulator, AlpA n=1 Tax=Burkholderia cenocepacia HI2424 RepID=A0K329_BURCH Length = 380 Score = 79.2 bits (194), Expect = 4e-14, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 3/66 (4%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLG---VKSVGWIEAEIDE 61 +A ++ RL V++ TG+ R++IY+ ++ S YD+TFP+ LG + GW E + Sbjct: 310 TAGKVARLKRVMELTGLGRSSIYNRMDEGSKHYDSTFPRSFKLGSGEAGATGWDEDAVKS 369 Query: 62 WLSQRC 67 W++ + Sbjct: 370 WVAAQA 375 >UniRef50_P12552 Uncharacterized protein ORF88 n=40 Tax=root RepID=Y9K_BPP4 Length = 88 Score = 79.2 bits (194), Expect = 4e-14, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 6/63 (9%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 + R LR+P V+ G++R+TIY+ + FP + LG K+V W+ +E+ W++ Sbjct: 23 TQERFLRVPEVMHLCGLSRSTIYELIRK------GEFPPQVSLGGKNVAWLHSEVTAWMA 76 Query: 65 QRC 67 R Sbjct: 77 GRI 79 >UniRef50_C6AQQ2 Transcriptional regulator, AlpA family n=6 Tax=Pasteurellaceae RepID=C6AQQ2_AGGAN Length = 69 Score = 78.4 bits (192), Expect = 6e-14, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 43/65 (66%) Query: 4 RSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 + RI+R ++ G++++T DW NPKS RY FPKK LGV SVG++E+EI+ ++ Sbjct: 2 NQSDRIIRRLDTMKMLGVSKSTFADWQNPKSKRYRPDFPKKIQLGVNSVGYLESEINSYI 61 Query: 64 SQRCK 68 ++ + Sbjct: 62 AKLAE 66 >UniRef50_Q46Z77 Prophage CP4-57 regulatory n=2 Tax=Burkholderiaceae RepID=Q46Z77_RALEJ Length = 87 Score = 78.4 bits (192), Expect = 7e-14, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 6/62 (9%) Query: 6 AVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 R +RLP VI G+ ++IYD + FPK L KSV W+ +EI +W+ Sbjct: 27 PERFMRLPEVIAVCGLPASSIYDGMR------RGDFPKPVPLAGKSVAWLSSEIRQWMES 80 Query: 66 RC 67 R Sbjct: 81 RI 82 >UniRef50_A4SQA2 Prophage regulatory protein n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449 RepID=A4SQA2_AERS4 Length = 69 Score = 77.2 bits (189), Expect = 1e-13, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 6/65 (9%) Query: 3 NRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEW 62 + +R+LR+ VI K G+++ TIY + + TFP+ +G KSV W+E EI++W Sbjct: 2 SEQNIRLLRIKDVISKVGLSKPTIYLRMK------EGTFPRPVSIGPKSVAWVEHEINDW 55 Query: 63 LSQRC 67 L+ + Sbjct: 56 LTAKI 60 >UniRef50_UPI0001BCF977 putative prophage CP4-57 regulatory protein n=1 Tax=Mannheimia haemolytica serotype A2 str. BOVINE RepID=UPI0001BCF977 Length = 77 Score = 76.9 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 28/60 (46%), Positives = 37/60 (61%) Query: 6 AVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 VRI+R QK G+ + T DW NPKS RY FPKK LG SVG++E+EI+ ++ Sbjct: 12 DVRIIRPIHARQKLGVGKTTFQDWQNPKSKRYRPDFPKKIQLGANSVGYLESEINAFIQS 71 >UniRef50_B2JL38 Phage transcriptional regulator, AlpA n=2 Tax=Proteobacteria RepID=B2JL38_BURP8 Length = 71 Score = 76.5 bits (187), Expect = 3e-13, Method: Composition-based stats. Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 6/56 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 R+LR+P V+++TGM+ T+Y ++ D TFP+ LG V W+E+EID W+ Sbjct: 6 RLLRMPEVVRRTGMSSTTVYRRIS------DGTFPRPVSLGCNRVAWLESEIDAWI 55 >UniRef50_A0Q3W1 Regulatory protein, AlpA family n=6 Tax=Francisella RepID=A0Q3W1_FRATN Length = 59 Score = 76.1 bits (186), Expect = 3e-13, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 6/62 (9%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 ++ILRL V++ TG ++ TIY W+N FPK L SVGW+EA+I++W+ + Sbjct: 1 MKILRLKQVVEMTGTSKTTIYRWINANQ------FPKPINLSHASVGWLEADINDWIQSK 54 Query: 67 CK 68 + Sbjct: 55 IQ 56 >UniRef50_B0U0W1 Phage transcriptional regulator, AlpA n=3 Tax=Gammaproteobacteria RepID=B0U0W1_FRAP2 Length = 66 Score = 76.1 bits (186), Expect = 3e-13, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 39/61 (63%), Gaps = 6/61 (9%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 +I+RL VI+ TG++R+TIYD++ FP++ LG S GW+ +E+DEWL R Sbjct: 3 KIIRLKTVIEMTGLSRSTIYDYMA------RGLFPRQITLGENSRGWLYSEVDEWLETRI 56 Query: 68 K 68 + Sbjct: 57 Q 57 >UniRef50_A1WW70 Phage transcriptional regulator, AlpA n=2 Tax=Gammaproteobacteria RepID=A1WW70_HALHL Length = 71 Score = 76.1 bits (186), Expect = 3e-13, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 41/67 (61%), Gaps = 6/67 (8%) Query: 2 NNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDE 61 + R+LR+ +VI++ G+ R+TIY + + FPK LG +++ W E++I+E Sbjct: 8 GIKPNERLLRINSVIKRVGLGRSTIYKKVK------EGGFPKPIKLGERAIAWRESDIEE 61 Query: 62 WLSQRCK 68 W+S+R + Sbjct: 62 WISRRHQ 68 >UniRef50_C6CIY7 Phage transcriptional regulator, AlpA n=3 Tax=Proteobacteria RepID=C6CIY7_DICZE Length = 70 Score = 75.7 bits (185), Expect = 4e-13, Method: Composition-based stats. Identities = 28/64 (43%), Positives = 36/64 (56%), Gaps = 6/64 (9%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 RILR V KTG RA IY+ + + FPK LGV++VGW AEID+W++ Sbjct: 10 PERRILRRAEVEAKTGFKRAHIYNLMK------EGKFPKALHLGVRAVGWDSAEIDQWIT 63 Query: 65 QRCK 68 R K Sbjct: 64 DRLK 67 >UniRef50_A5UG77 Predicted transcriptional regulator n=1 Tax=Haemophilus influenzae PittGG RepID=A5UG77_HAEIG Length = 71 Score = 75.7 bits (185), Expect = 4e-13, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 6/64 (9%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 A R ++LP V+ KTG+ R++IY +N FP+ L ++ W+E+E++ W+ Sbjct: 7 QAERFIKLPEVMNKTGLGRSSIYRKMNT------GDFPRSIQLNKNNIVWLESEVNAWMQ 60 Query: 65 QRCK 68 + + Sbjct: 61 AQIE 64 >UniRef50_A3P008 Prophage CP4-57 regulatory protein (AlpA) n=4 Tax=Burkholderia pseudomallei RepID=A3P008_BURP0 Length = 70 Score = 75.7 bits (185), Expect = 4e-13, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 5/60 (8%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 R+LR+ V+++TG++R+TIY + D TFPKK L ++ G IE ++D W++ R Sbjct: 14 RVLRIKDVVERTGLSRSTIYVLMKS-----DPTFPKKVGLSARTTGVIEHQLDAWIASRT 68 >UniRef50_A5W5Z3 Phage transcriptional regulator, AlpA n=2 Tax=Pseudomonas RepID=A5W5Z3_PSEP1 Length = 70 Score = 75.7 bits (185), Expect = 5e-13, Method: Composition-based stats. Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 6/58 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 R+LRLP V++ TGM R T+Y + + TFPK+ +G KSV W +++I++W++ Sbjct: 9 RLLRLPDVLRITGMGRNTVYTRIK------EGTFPKQVKIGPKSVAWRQSDINQWMAS 60 >UniRef50_Q2NDG2 Putative uncharacterized protein n=1 Tax=Erythrobacter litoralis HTCC2594 RepID=Q2NDG2_ERYLH Length = 77 Score = 75.3 bits (184), Expect = 5e-13, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 6/65 (9%) Query: 4 RSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 R R++ LP V + G+ R+TIY W+ + FP LG SV W E ID W+ Sbjct: 17 RQVTRLIHLPEVQHRVGLGRSTIYRWMA------EGKFPGPVELGGYSVAWEERAIDVWI 70 Query: 64 SQRCK 68 SQR Sbjct: 71 SQRLD 75 >UniRef50_Q46YP9 Prophage CP4-57 regulatory n=1 Tax=Ralstonia eutropha JMP134 RepID=Q46YP9_RALEJ Length = 67 Score = 75.3 bits (184), Expect = 6e-13, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 7/67 (10%) Query: 1 MNNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEID 60 MN + RI+RLP V ++ G+ + IY + D TFP LG ++ GWIE E+ Sbjct: 1 MNTQPQRRIIRLPEVCERVGLGKTAIYGRIK------DHTFPSPIKLG-RASGWIEEEVQ 53 Query: 61 EWLSQRC 67 +W+ ++ Sbjct: 54 QWVDEQI 60 >UniRef50_C1DSG0 Prophage CP4-57 regulatory, AlpA-like protein n=1 Tax=Azotobacter vinelandii DJ RepID=C1DSG0_AZOVD Length = 95 Score = 74.9 bits (183), Expect = 8e-13, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 6/60 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 R+LRLP V KTG ++ IY + TFP +G SV W+EAE+D+W++ R Sbjct: 20 RLLRLPDVESKTGKSKQAIYAAIRA------GTFPAPVPIGRNSVAWLEAEVDQWIADRL 73 >UniRef50_B5SEZ3 Bacteriophage dna-binding protein n=4 Tax=Proteobacteria RepID=B5SEZ3_RALSO Length = 88 Score = 74.5 bits (182), Expect = 8e-13, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 6/63 (9%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 +A R LRLP V+ G+AR++IY+ + + FP+ L V W+++EI +W++ Sbjct: 27 AAERFLRLPEVMSTCGLARSSIYEKVA------NGDFPQPVRLTRCCVAWVDSEIRQWMA 80 Query: 65 QRC 67 R Sbjct: 81 ARI 83 >UniRef50_C6S833 Putative prophage regulatory protein n=4 Tax=Neisseria RepID=C6S833_NEIML Length = 71 Score = 74.5 bits (182), Expect = 8e-13, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 38/57 (66%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 +LR+ V ++ G++R+T+++W N KS Y A FP+ + VGW+ +EID+++ + Sbjct: 5 VLRVNQVAERLGVSRSTVWNWGNTKSRHYRADFPRPFKVSANVVGWLSSEIDDYIGK 61 >UniRef50_A4TK05 Transcriptional regulator n=21 Tax=Enterobacteriaceae RepID=A4TK05_YERPP Length = 61 Score = 74.5 bits (182), Expect = 9e-13, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 40/63 (63%), Gaps = 6/63 (9%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 ++ ++LRL V QKTG+ R+ IY ++ + FP+ +G SV W+E+EIDEW++ Sbjct: 2 TSYQLLRLRQVEQKTGLKRSQIYLYMK------EGAFPRSIKIGPASVAWLESEIDEWIN 55 Query: 65 QRC 67 ++ Sbjct: 56 KKL 58 >UniRef50_A1SRJ5 Phage transcriptional regulator, AlpA n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SRJ5_PSYIN Length = 74 Score = 74.5 bits (182), Expect = 9e-13, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 40/63 (63%), Gaps = 6/63 (9%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 ++ILRL V++KTG++RA +Y + D FP + ++SVGW+++E++ W+ R Sbjct: 1 MKILRLADVVKKTGLSRAMLYKLMK------DGRFPLNLHISMRSVGWVDSEVEIWMENR 54 Query: 67 CKL 69 ++ Sbjct: 55 LEM 57 >UniRef50_Q0HVT5 Phage transcriptional regulator, AlpA n=14 Tax=cellular organisms RepID=Q0HVT5_SHESR Length = 73 Score = 74.5 bits (182), Expect = 9e-13, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 6/61 (9%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 ++++R+ VI TG+AR+TIY +++ FPK LG +SV W+E+E+ EW+ +R Sbjct: 5 IKLIRIKDVIDTTGLARSTIYKYVDK------GIFPKAVKLGSRSVAWVESEVQEWILER 58 Query: 67 C 67 Sbjct: 59 I 59 >UniRef50_Q0HGG2 Phage transcriptional regulator, AlpA n=3 Tax=Bacteria RepID=Q0HGG2_SHESM Length = 66 Score = 74.5 bits (182), Expect = 1e-12, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 6/60 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 +I+RLP V +TG++R++IY ++ FP LG ++VGW+EA+I++WL +R Sbjct: 4 KIMRLPEVKSRTGLSRSSIYLRISK------GEFPASISLGDRAVGWLEADIEQWLDERI 57 >UniRef50_D2TNW8 Putative uncharacterized protein n=1 Tax=Citrobacter rodentium ICC168 RepID=D2TNW8_CITRO Length = 79 Score = 73.8 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 6/63 (9%) Query: 6 AVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 A R +R+P V+ + G +R T+Y+ + + FP + +G + V ++E+EIDEW+ Sbjct: 16 AKRFIRVPDVLNRVGFSRTTLYERIK------EGNFPDRVKIGPRCVAFVESEIDEWIEA 69 Query: 66 RCK 68 + Sbjct: 70 TIR 72 >UniRef50_A3Z0Z5 DNA-binding protein, putative n=2 Tax=Synechococcus RepID=A3Z0Z5_9SYNE Length = 68 Score = 73.8 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 38/66 (57%), Gaps = 6/66 (9%) Query: 3 NRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEW 62 + R+LRLP VI + G++R TIY + FP++ ++G ++V W + E++ W Sbjct: 2 TSATDRLLRLPEVIHRVGLSRTTIYSLIAT------GEFPRQIVIGPRAVAWSQQELEAW 55 Query: 63 LSQRCK 68 ++ + + Sbjct: 56 ITSKRQ 61 >UniRef50_A4SPW1 Probable prophage regulatory protein n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449 RepID=A4SPW1_AERS4 Length = 77 Score = 73.4 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 7/64 (10%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLG-VKSVGWIEAEIDEWL 63 A+R +R+ I +TG+++++IYD + FPK LG +SV +IEAEID W+ Sbjct: 13 PALRFIRVREAINRTGLSKSSIYDMMA------QGQFPKTVRLGSGRSVAFIEAEIDAWM 66 Query: 64 SQRC 67 ++R Sbjct: 67 AERV 70 >UniRef50_Q0I4F9 Phage transcriptional regulator, AlpA n=2 Tax=Bacteria RepID=Q0I4F9_HAES1 Length = 61 Score = 73.0 bits (178), Expect = 3e-12, Method: Composition-based stats. Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 6/58 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 RILR+ V QKTG+ R+TIY + TFP + LG +S GW E+E+D W+ Q Sbjct: 3 RILRIKDVCQKTGLPRSTIYARIKQ------GTFPAQLKLGARSSGWKESELDLWIEQ 54 >UniRef50_C6DCW7 Phage transcriptional regulator, AlpA n=3 Tax=Pectobacterium carotovorum RepID=C6DCW7_PECCP Length = 86 Score = 73.0 bits (178), Expect = 3e-12, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 6/60 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 R++RLP V+ TG++R+T+Y+ K+ FP + LG K+V W+E+EI W+++R Sbjct: 24 RLMRLPEVLHVTGISRSTLYELSGRKA------FPARVPLGGKNVAWVESEIHHWVAERI 77 >UniRef50_Q1RPF9 ECs3513 protein n=4 Tax=Escherichia RepID=Q1RPF9_ECOLX Length = 72 Score = 72.6 bits (177), Expect = 3e-12, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 6/64 (9%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 S R +R+P V+ + G +R T+Y+ + + FP + +G + V ++E+EIDEW+ Sbjct: 8 SVKRFIRVPDVLNRVGFSRTTLYERIK------EGNFPDRVKIGPRCVAFVESEIDEWIE 61 Query: 65 QRCK 68 + Sbjct: 62 AAIR 65 >UniRef50_A1TYD2 Phage transcriptional regulator, AlpA n=3 Tax=Proteobacteria RepID=A1TYD2_MARAV Length = 75 Score = 72.6 bits (177), Expect = 4e-12, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 6/61 (9%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 R+LR V TG +R+ IY+ + TFPK +G ++V W E+ I W+++R Sbjct: 17 RMLRRKEVEAITGRSRSAIYEGMAA------GTFPKPVKIGARAVAWPESAIRNWIAERM 70 Query: 68 K 68 + Sbjct: 71 E 71 >UniRef50_D0M6T1 Phage transcriptional regulator AlpA n=1 Tax=Vibrio sp. Ex25 RepID=D0M6T1_VIBSE Length = 66 Score = 72.2 bits (176), Expect = 5e-12, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 6/58 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 +I+RLP VI TG++R+TIY ++ +FP LG ++VGW++ +I++WL Sbjct: 4 KIIRLPEVIDMTGLSRSTIYLRMS------QGSFPLSISLGERAVGWLKVDIEKWLDA 55 >UniRef50_C0DTI2 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DTI2_EIKCO Length = 137 Score = 71.8 bits (175), Expect = 6e-12, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 4 RSAVRILRLPAVIQKTGMARATIYDWLNPKSP-RYDATFPKKRMLGVKSVGW 54 +R+LRLP V+ TG++RA IY NPK RYD FP++ L +V W Sbjct: 53 NITMRMLRLPDVMAITGLSRAAIYAKCNPKDKARYDPDFPQRVQLSANTVAW 104 >UniRef50_Q5QX32 Prophage CP4-57 regulatory protein-like protein n=2 Tax=Idiomarina RepID=Q5QX32_IDILO Length = 68 Score = 71.8 bits (175), Expect = 6e-12, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 6/61 (9%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 +R LR+ V ++ G+ R +IY +N + TFPK + K V W+++E+DEW+ +R Sbjct: 1 MRFLRINEVRERIGLGRTSIYKMVN------EGTFPKPVRVLGKKVAWVDSEVDEWMLER 54 Query: 67 C 67 Sbjct: 55 I 55 >UniRef50_C2LJX4 Possible phage transcriptional regulator n=1 Tax=Proteus mirabilis ATCC 29906 RepID=C2LJX4_PROMI Length = 68 Score = 71.8 bits (175), Expect = 7e-12, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 6/61 (9%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 ++LRL V+ +TG +++ Y ++ FPK+ +G +SV +IE+E+DEW+ QR Sbjct: 3 YKLLRLDEVLDRTGYSKSWTYKLIDK------GEFPKQVKIGSRSVRFIESEVDEWIEQR 56 Query: 67 C 67 Sbjct: 57 I 57 >UniRef50_C4L9N9 Phage transcriptional regulator, AlpA n=11 Tax=Proteobacteria RepID=C4L9N9_TOLAT Length = 79 Score = 71.1 bits (173), Expect = 9e-12, Method: Composition-based stats. Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 6/61 (9%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 RILRL V K+G RA IY + FP+ LGV++VGW EID W+++R Sbjct: 13 RILRLDEVEAKSGFKRAHIYSLMKK------GEFPQSLRLGVRAVGWDSTEIDLWITERL 66 Query: 68 K 68 K Sbjct: 67 K 67 >UniRef50_A1TJN4 Phage transcriptional regulator, AlpA n=28 Tax=Proteobacteria RepID=A1TJN4_ACIAC Length = 75 Score = 71.1 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 6/65 (9%) Query: 2 NNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDE 61 + ++ R+LR P V Q+TG RA IY + K FP++ LGV++VGW E EID+ Sbjct: 14 DAPTSRRVLRRPLVEQRTGFKRAHIYSLMKEKK------FPQRVRLGVRAVGWYEDEIDQ 67 Query: 62 WLSQR 66 WL+QR Sbjct: 68 WLAQR 72 >UniRef50_Q13HX3 Phage transcriptional regulator, AlpA n=5 Tax=Proteobacteria RepID=Q13HX3_BURXL Length = 75 Score = 71.1 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 6/63 (9%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 R++RL V + G+ +T+Y +L FP+ +G V W+E+EID W++ R Sbjct: 14 RLIRLREVRTRVGLGASTVYRYLAA------GKFPRPVEIGGGRVAWVESEIDAWIASRR 67 Query: 68 KLI 70 +++ Sbjct: 68 EVV 70 >UniRef50_Q2NBH3 Predicted transcriptional regulator n=4 Tax=Sphingomonadales RepID=Q2NBH3_ERYLH Length = 88 Score = 70.7 bits (172), Expect = 1e-11, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 6/64 (9%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 + R++RLP V+ + G+ R IY + + FPK R LG + W+EAEID+W+ Sbjct: 17 TPDRLIRLPEVMARVGLRRTAIYQRMR------EGRFPKSRSLGPRCTVWVEAEIDDWIG 70 Query: 65 QRCK 68 + Sbjct: 71 SVVE 74 >UniRef50_A4CWC5 Predicted transcriptional regulator n=1 Tax=Synechococcus sp. WH 7805 RepID=A4CWC5_SYNPV Length = 64 Score = 69.9 bits (170), Expect = 3e-11, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 39/63 (61%), Gaps = 6/63 (9%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 ++ + +RLP V + T +++++IY + FPK+ LG +SV W++++I++W + Sbjct: 3 TSTQFIRLPQVKEITSLSKSSIYRLMEV------GDFPKQVALGARSVVWVKSQIEDWCA 56 Query: 65 QRC 67 ++ Sbjct: 57 EKV 59 >UniRef50_D0BWH4 Phage protein (Fragment) n=1 Tax=Acinetobacter sp. RUH2624 RepID=D0BWH4_9GAMM Length = 56 Score = 69.9 bits (170), Expect = 3e-11, Method: Composition-based stats. Identities = 25/56 (44%), Positives = 39/56 (69%), Gaps = 1/56 (1%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 +++RLP + + TG++R++IYD LNPKS RYD+TFP+ L S W +E+ W+ Sbjct: 2 QLIRLPELEKLTGLSRSSIYDRLNPKSKRYDSTFPRAIKLSHSS-RWRLSEVLNWI 56 >UniRef50_D2NKU9 Putative transcriptional regulator n=1 Tax=Escherichia coli SE15 RepID=D2NKU9_ECOLX Length = 75 Score = 69.5 bits (169), Expect = 3e-11, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 6/64 (9%) Query: 4 RSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 + R+LR+ VI TG+ ++TIY + + FP + +G +SV W+E E++EW+ Sbjct: 11 QKRYRLLRISEVINLTGLPKSTIYLKIK------NDEFPNQVSIGSRSVAWVEHEVNEWI 64 Query: 64 SQRC 67 + Sbjct: 65 EKNI 68 >UniRef50_UPI0000E0FEEA phage transcriptional regulator, AlpA n=1 Tax=Glaciecola sp. HTCC2999 RepID=UPI0000E0FEEA Length = 71 Score = 69.5 bits (169), Expect = 3e-11, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 8/66 (12%) Query: 1 MNNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRML--GVKSVGWIEAE 58 M + RILR+ V +KTG++++ IY + ++ FP+ L G +VGW+E++ Sbjct: 1 MCSTKTRRILRINDVAKKTGLSKSYIYALV------HNGQFPQSIRLVKGGTAVGWLESD 54 Query: 59 IDEWLS 64 I++W+ Sbjct: 55 IEQWID 60 >UniRef50_C9PEM5 Putative uncharacterized protein n=1 Tax=Vibrio furnissii CIP 102972 RepID=C9PEM5_VIBFU Length = 75 Score = 69.2 bits (168), Expect = 4e-11, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 7/55 (12%) Query: 9 ILRLPAVIQKTGM-ARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEW 62 +LR P V+ TG +R TIY+W+ TFPK +G S+GW+++E D W Sbjct: 15 VLRFPEVLALTGARSRQTIYNWME------RGTFPKPIKIGPNSIGWLKSECDAW 63 >UniRef50_B2JC70 Phage transcriptional regulator, AlpA n=2 Tax=Burkholderiaceae RepID=B2JC70_BURP8 Length = 73 Score = 69.2 bits (168), Expect = 4e-11, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 6/62 (9%) Query: 4 RSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 R+ I+R P V ++TG++R+TIY + TFP LGV+SVGW A+I+ +L Sbjct: 7 RAPTAIMRRPEVERETGLSRSTIYGRIKS------GTFPPPVRLGVRSVGWRSADIEAFL 60 Query: 64 SQ 65 + Sbjct: 61 TS 62 >UniRef50_UPI0001AF502E phage transcriptional regulator, AlpA n=1 Tax=Pseudomonas syringae pv. oryzae str. 1_6 RepID=UPI0001AF502E Length = 80 Score = 68.4 bits (166), Expect = 7e-11, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 6/65 (9%) Query: 3 NRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEW 62 + RILRLP V + G RA IY ++ FP+ LG ++VGW +++W Sbjct: 8 TTTQRRILRLPEVQVRIGFKRAHIYSLMS------QGLFPRSVPLGPRAVGWDSLAVEKW 61 Query: 63 LSQRC 67 + R Sbjct: 62 IEDRI 66 >UniRef50_A4TNW0 Transcriptional regulator n=18 Tax=Enterobacteriaceae RepID=A4TNW0_YERPP Length = 66 Score = 68.4 bits (166), Expect = 8e-11, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 6/63 (9%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 S + ++RLP VI+K + +++IY ++ FP+ LG +SV W+E+E+DEW+ Sbjct: 2 SDINLIRLPEVIEKIRLKKSSIYHLISLNQ------FPRPIKLGPRSVAWVESEVDEWVI 55 Query: 65 QRC 67 R Sbjct: 56 IRI 58 >UniRef50_B8L4N0 Putative transcriptional regulator n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L4N0_9GAMM Length = 79 Score = 68.0 bits (165), Expect = 9e-11, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 6/60 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRCK 68 +LRL V +TG+A+ TIYD + FP + LG W E EI+ W+ + + Sbjct: 13 LLRLKEVSARTGLAKNTIYDRIR------RGEFPAQIDLGGNCSAWSEDEINAWIRSKME 66 >UniRef50_B5EWU9 Conserved domain protein n=61 Tax=Enterobacteriaceae RepID=B5EWU9_SALA4 Length = 72 Score = 67.6 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 6/60 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRCK 68 +RLP VI++TG + IY+ + FP + G+++V +IE+EIDEW+ + Sbjct: 12 FIRLPEVIKRTGFGKTWIYELIKA------GRFPSQVKTGIRAVAFIESEIDEWIEATIR 65 >UniRef50_Q47ZW9 Putative uncharacterized protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47ZW9_COLP3 Length = 103 Score = 67.2 bits (163), Expect = 2e-10, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 36/62 (58%), Gaps = 6/62 (9%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 +R++RL V+ +G+ R++IY ++ + FP LG +++ W +E++EW+ + Sbjct: 1 MRLIRLKEVMSISGLGRSSIYKFME------EGRFPMSISLGERAIAWEVSEVEEWVLDK 54 Query: 67 CK 68 + Sbjct: 55 IE 56 >UniRef50_A1U0S6 Phage transcriptional regulator, AlpA n=2 Tax=Gammaproteobacteria RepID=A1U0S6_MARAV Length = 81 Score = 67.2 bits (163), Expect = 2e-10, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 8/61 (13%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLG--VKSVGWIEAEIDEWLSQR 66 I+RL +++TG++R+T+YD FPK L +VGW+E+E++ W+ R Sbjct: 8 IIRLAETLRRTGLSRSTLYDLQTA------GDFPKSIKLTRQGSAVGWLESEVNAWIEAR 61 Query: 67 C 67 Sbjct: 62 V 62 >UniRef50_A3NM12 Prophage CP4-57 regulatory protein (AlpA) n=10 Tax=Burkholderiaceae RepID=A3NM12_BURP6 Length = 78 Score = 66.8 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 6/61 (9%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 ++ LR+ ++ K G+ ++T+Y + TFPK L W+E +ID WL+++ Sbjct: 2 MKALRMKDIVDKVGLGQSTLYRMIAA------GTFPKPFELVPGRTAWLEEDIDAWLAEK 55 Query: 67 C 67 Sbjct: 56 A 56 >UniRef50_A1SV81 Phage transcriptional regulator, AlpA n=4 Tax=Gammaproteobacteria RepID=A1SV81_PSYIN Length = 79 Score = 66.8 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 9/69 (13%) Query: 3 NRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLG---VKSVGWIEAEI 59 + +I+RLP V TG+ARATIY + FP L ++VGW+E EI Sbjct: 2 TTKSKKIIRLPEVKDMTGLARATIYKKMATD------DFPMSINLSSGCGRAVGWVEIEI 55 Query: 60 DEWLSQRCK 68 +W+++R + Sbjct: 56 LDWINERIE 64 >UniRef50_A9FCF4 DNA-binding protein, putative n=6 Tax=Rhodobacteraceae RepID=A9FCF4_9RHOB Length = 65 Score = 66.8 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 6/65 (9%) Query: 2 NNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDE 61 N + A + R P V + TG++R TIY ++ FP+ + K+V W E+ I E Sbjct: 4 NTQMAEKHYRRPEVEELTGLSRTTIYAMMS------RGEFPRPVRMTRKAVAWPESAIAE 57 Query: 62 WLSQR 66 WLS R Sbjct: 58 WLSSR 62 >UniRef50_D0J4J3 Phage transcriptional regulator, AlpA n=1 Tax=Comamonas testosteroni CNB-2 RepID=D0J4J3_COMTE Length = 55 Score = 66.5 bits (161), Expect = 2e-10, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 32/46 (69%) Query: 20 GMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 G++R+T+Y LNPK+ YD +FPK LG+K+VGW ++ ++ + Sbjct: 2 GLSRSTVYLRLNPKTKYYDPSFPKPIQLGMKAVGWKLEDVYSYIEK 47 >UniRef50_A4JAZ2 Phage transcriptional regulator, AlpA n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JAZ2_BURVG Length = 68 Score = 66.5 bits (161), Expect = 2e-10, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 6/61 (9%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 R++R+ ++ + G++++ IY + FPK LG ++VGW+E++I+ W+ + Sbjct: 10 RVVRMRCLLGRVGLSKSEIYRRIQA------GAFPKPIPLGTRAVGWLESDINAWIDTQA 63 Query: 68 K 68 K Sbjct: 64 K 64 >UniRef50_D0KY14 Phage transcriptional regulator, AlpA n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KY14_HALNC Length = 56 Score = 66.1 bits (160), Expect = 3e-10, Method: Composition-based stats. Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 6/58 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 ILRL V++ TG +R++IY W++ FP+ LGV++VGW +E+ +WL R Sbjct: 4 ILRLHDVLRITGASRSSIYLWVSA------GIFPQPVKLGVRAVGWRRSEVQQWLDDR 55 >UniRef50_C4GIW5 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GIW5_9NEIS Length = 74 Score = 66.1 bits (160), Expect = 3e-10, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 1/62 (1%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLG-VKSVGWIEAEIDEWLSQR 66 +ILR G + AT++ NP + R+DA+FPK LG ++VG ++ ++D W++ + Sbjct: 4 KILRPKQAAAYCGFSVATLWAKTNPNNRRHDASFPKPFKLGNGRAVGILKDDLDAWIATQ 63 Query: 67 CK 68 + Sbjct: 64 RQ 65 >UniRef50_D1UHG7 Phage transcriptional regulator, AlpA n=1 Tax=Burkholderia sp. CCGE1001 RepID=D1UHG7_9BURK Length = 70 Score = 66.1 bits (160), Expect = 3e-10, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 6/60 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 +++R+ V++K G+ RATIY ++ FP+ +G ++ GW E+E++ WL+ R Sbjct: 3 QVMRMKDVVKKIGLCRATIYAMIS------RGEFPRPIRIGERATGWRESELEGWLANRA 56 >UniRef50_B0TKK3 Phage transcriptional regulator, AlpA n=1 Tax=Shewanella halifaxensis HAW-EB4 RepID=B0TKK3_SHEHH Length = 71 Score = 65.7 bits (159), Expect = 4e-10, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 6/64 (9%) Query: 4 RSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 + ++++ VIQ T ++R+TIY +N + FPK L +SV W+ E+++W+ Sbjct: 8 KQPNDLIKIKEVIQMTSLSRSTIYTKMNQQ------DFPKSISLSSRSVVWVRKELEDWI 61 Query: 64 SQRC 67 + Sbjct: 62 QNKM 65 >UniRef50_A9IRW1 Strain DSM 12804, complete genome n=1 Tax=Bordetella petrii DSM 12804 RepID=A9IRW1_BORPD Length = 67 Score = 65.3 bits (158), Expect = 5e-10, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 6/60 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 +ILR+ V + TG++R IY + FP++ LG +SVGW+ ++++ W R Sbjct: 6 QILRITDVTRITGLSRPAIYYNVK------RGLFPRQIQLGPRSVGWLASDVEAWFQSRI 59 >UniRef50_A3VKJ6 DNA-binding protein, putative n=2 Tax=Proteobacteria RepID=A3VKJ6_9RHOB Length = 59 Score = 65.3 bits (158), Expect = 5e-10, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 6/59 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 +LR V TG++R+ IY ++ FP+ +G ++V W ++I +W++ R Sbjct: 5 LLRRAEVEAITGLSRSGIYALMSAN------DFPRPIRVGKRAVAWKSSDITDWINSRA 57 >UniRef50_C8R2I6 Phage transcriptional regulator, AlpA n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R2I6_9DELT Length = 92 Score = 64.9 bits (157), Expect = 7e-10, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 11/72 (15%) Query: 1 MNNRSA--VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGV---KSVGWI 55 +NN+ +++ R+ V +TG+ R+++YD L FP+ LG ++ Sbjct: 17 VNNQPPAPLQLERVREVCARTGIPRSSLYDLLKK------GEFPQPVKLGTGKRSQTAFV 70 Query: 56 EAEIDEWLSQRC 67 EID W+ R Sbjct: 71 SHEIDAWIESRM 82 >UniRef50_Q28S53 Phage transcriptional regulator, AlpA n=23 Tax=Alphaproteobacteria RepID=Q28S53_JANSC Length = 76 Score = 64.5 bits (156), Expect = 1e-09, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 6/60 (10%) Query: 6 AVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 RI+RL V+ +TG++R+T+Y + + TFP + + V GW E+EI EW+ Sbjct: 4 PDRIVRLTTVLDRTGLSRSTLYRKIA------EGTFPAQLRISVHGAGWRESEIGEWIDN 57 >UniRef50_A3JW32 Prophage CP4-57 regulatory n=1 Tax=Rhodobacterales bacterium HTCC2150 RepID=A3JW32_9RHOB Length = 65 Score = 64.1 bits (155), Expect = 1e-09, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 4/59 (6%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 +R+ ++ TG+ +++IY LN ++ FP+ R LG ++V W+ E+ EW+ R Sbjct: 9 FMRISELVATTGIPKSSIYQKLNEENS----DFPRPRRLGPRAVAWMSDEVYEWMRSRV 63 >UniRef50_Q2SPA0 Predicted transcriptional regulator n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SPA0_HAHCH Length = 71 Score = 63.8 bits (154), Expect = 1e-09, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 6/57 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 I R+ + TG++R+TIY+ + +FP LG ++VGW E+ +D+W + Sbjct: 5 IFRIKETTKLTGLSRSTIYERVAS------GSFPPPVSLGHRAVGWFESSLDDWQAS 55 >UniRef50_B6AMX6 Phage DNA binding protein n=2 Tax=Bacteria RepID=B6AMX6_9BACT Length = 60 Score = 63.8 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 35/61 (57%), Gaps = 6/61 (9%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 RILRLP V+ G++R+++Y + FP++ L ++ GW +++++W+ + Sbjct: 3 RILRLPEVLSTVGISRSSLYALIA------QGQFPRQIRLSPRTSGWRLSDVEDWIRAKA 56 Query: 68 K 68 + Sbjct: 57 E 57 >UniRef50_B3Q046 Putative uncharacterized protein n=1 Tax=Rhizobium etli CIAT 652 RepID=B3Q046_RHIE6 Length = 68 Score = 63.8 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 6/62 (9%) Query: 6 AVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 A +IL + VI +TG++R T+Y ++ + FP+ L + VGW E ++D W+ Sbjct: 5 ASKILPIEEVIDRTGLSRRTLYQEIS------EGRFPRPVQLTSRRVGWPENDVDTWIDH 58 Query: 66 RC 67 + Sbjct: 59 KI 60 >UniRef50_C0VI45 Putative uncharacterized protein n=1 Tax=Acinetobacter sp. ATCC 27244 RepID=C0VI45_9GAMM Length = 64 Score = 63.4 bits (153), Expect = 2e-09, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 31/44 (70%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKS 51 +++ + VI+ TG++R+TIY+ ++ SP YD TFPKK + K+ Sbjct: 13 QLISIKKVIEFTGVSRSTIYEAMDENSPYYDPTFPKKITISQKT 56 >UniRef50_B4RZR3 Phage transcriptional regulator, AlpA n=1 Tax=Alteromonas macleodii 'Deep ecotype' RepID=B4RZR3_ALTMD Length = 70 Score = 63.4 bits (153), Expect = 2e-09, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 6/61 (9%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRCK 68 ILR+ V + G+ + TIY + FP++ LG ++ GW+ +EI++W ++R Sbjct: 12 ILRMSDVEKTVGLKKPTIYKLIKK------GEFPRQINLGGRASGWLLSEINQWKAERIA 65 Query: 69 L 69 + Sbjct: 66 I 66 >UniRef50_B7VPA4 Predicted transcriptional regulator n=31 Tax=Gammaproteobacteria RepID=B7VPA4_VIBSL Length = 63 Score = 63.4 bits (153), Expect = 2e-09, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 6/64 (9%) Query: 4 RSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 R++RL V+ TG++R+ +Y + + FP + +G ++V W+E+E+ +W+ Sbjct: 3 NVTTRLIRLNEVLVMTGLSRSGMYRSIEKQQ------FPSQVPIGDRAVAWVESEVQDWV 56 Query: 64 SQRC 67 QR Sbjct: 57 RQRV 60 >UniRef50_A7JWM9 Possible bacteriophage transcriptional regulator n=1 Tax=Mannheimia haemolytica PHL213 RepID=A7JWM9_PASHA Length = 68 Score = 63.0 bits (152), Expect = 3e-09, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 6/67 (8%) Query: 2 NNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDE 61 N + R +++ V T ++ IY + FP+ +G S W+E+EI + Sbjct: 3 NTPAKQRFMKIDEVSAVTTLSETQIYRKMKA------GDFPQSISIGANSKVWLESEIQQ 56 Query: 62 WLSQRCK 68 W+ ++ + Sbjct: 57 WIQRKIE 63 >UniRef50_D1NFX2 Prophage CP4-57 regulatory protein n=1 Tax=Haemophilus influenzae HK1212 RepID=D1NFX2_HAEIN Length = 82 Score = 63.0 bits (152), Expect = 3e-09, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 36/64 (56%) Query: 2 NNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDE 61 + A R LR + ++ G++ T+ DW NPK+ RY FPK + + ++E+EI+ Sbjct: 11 DTEQAPRFLRRKSTAERLGVSLTTLDDWRNPKAKRYRPDFPKAIKVANGATCFLESEINA 70 Query: 62 WLSQ 65 ++ + Sbjct: 71 YVLK 74 >UniRef50_C2LH22 Putative uncharacterized protein n=1 Tax=Proteus mirabilis ATCC 29906 RepID=C2LH22_PROMI Length = 85 Score = 63.0 bits (152), Expect = 3e-09, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 6/68 (8%) Query: 1 MNNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEID 60 MN + +R+PAV++ TG++R+TI ++ FPK+ L V+ V W E+ Sbjct: 1 MNIKLPTNPIRMPAVLKLTGLSRSTI------RTLEKKGDFPKRMYLSVRCVAWEAHEVY 54 Query: 61 EWLSQRCK 68 EW+ ++ K Sbjct: 55 EWIDKKAK 62 >UniRef50_A8AM43 Putative uncharacterized protein n=4 Tax=Enterobacteriaceae RepID=A8AM43_CITK8 Length = 66 Score = 62.6 bits (151), Expect = 4e-09, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 6/65 (9%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 ++ R LRL V K G ++ IY + + FP L + V W+E+E+D W+ Sbjct: 4 NSDRFLRLRQVEDKIGFGKSWIYRQIQLQQ------FPPFIRLNSRHVAWLESEVDAWIH 57 Query: 65 QRCKL 69 QR +L Sbjct: 58 QRIRL 62 >UniRef50_B1SZZ6 Phage transcriptional regulator, AlpA n=1 Tax=Burkholderia ambifaria MEX-5 RepID=B1SZZ6_9BURK Length = 72 Score = 62.6 bits (151), Expect = 4e-09, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 6/59 (10%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 R+LR V + G++++ IY + TFP LG ++V W E+ +++W+ Sbjct: 12 RPERLLRFAEVRARIGLSKSEIYRRIGA------GTFPAGVKLGARAVAWRESAVEDWI 64 >UniRef50_UPI00016ADB9E regulatory protein, AlpA family n=3 Tax=pseudomallei group RepID=UPI00016ADB9E Length = 63 Score = 62.6 bits (151), Expect = 4e-09, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 6/61 (9%) Query: 6 AVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 A++ILRL V+ G+ + T+Y W+ + FP LG +SVGW ++ W+ Sbjct: 2 ALKILRLIGVLDCVGVKKTTLYRWIR------EGKFPAPVQLGARSVGWRATDVQHWVES 55 Query: 66 R 66 R Sbjct: 56 R 56 >UniRef50_D1TJS7 Putative uncharacterized protein n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1TJS7_9BURK Length = 195 Score = 62.2 bits (150), Expect = 5e-09, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 6/57 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 I+R V ++TG++ +TIY + D TFP +G S GW +I+ +L+ Sbjct: 127 IMRRDEVERETGLSHSTIYKRIK------DGTFPAPLKIGPGSTGWRVTDIEAFLAS 177 >UniRef50_A9D684 Phage transcriptional regulator, AlpA n=2 Tax=Alteromonadales RepID=A9D684_9GAMM Length = 80 Score = 62.2 bits (150), Expect = 5e-09, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 6/63 (9%) Query: 3 NRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEW 62 N+ RI+R P VI +TG+++ T+Y+ + D FP LG ++VG++++E + Sbjct: 2 NQYQPRIIRKPDVINETGLSKLTLYNRIK------DGLFPPPISLGARAVGFVKSECEAV 55 Query: 63 LSQ 65 ++ Sbjct: 56 INA 58 >UniRef50_C1DSG1 Prophage CP4-57 regulatory , AlpA-like protein n=1 Tax=Azotobacter vinelandii DJ RepID=C1DSG1_AZOVD Length = 77 Score = 61.8 bits (149), Expect = 6e-09, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 10/72 (13%) Query: 2 NNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVK-----SVGWIE 56 N + + ++R+ V + TG+AR TIY ++ D TFP+ L V ++ Sbjct: 5 GNGAPLALVRMREVQEMTGLARPTIYKTISR-----DPTFPRPVKLSDSPARNAPVAFVL 59 Query: 57 AEIDEWLSQRCK 68 +E+ EW+++R K Sbjct: 60 SEVQEWINRRIK 71 >UniRef50_B0RRY0 Putative uncharacterized protein n=2 Tax=Xanthomonas RepID=B0RRY0_XANCB Length = 142 Score = 61.4 bits (148), Expect = 8e-09, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 7/64 (10%) Query: 3 NRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRML-GVKSVGWIEAEIDE 61 +RLP VI G++++T+Y W FPK G W+ E+ Sbjct: 72 TTLPYHFMRLPEVIATVGVSKSTLYAW------AAAGKFPKPVQFPGGNIAAWVSTEVAA 125 Query: 62 WLSQ 65 W+S Sbjct: 126 WMSA 129 >UniRef50_C6TZS2 Prophage CP4-57 regulatory protein (AlpA) n=1 Tax=Burkholderia pseudomallei 1710a RepID=C6TZS2_BURPS Length = 465 Score = 61.4 bits (148), Expect = 8e-09, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 33/61 (54%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 A +L + V ++ ++ + +++ + P S YD FP K L ++V + +A++D W+ Sbjct: 253 PAGPLLDIKQVSERVNISVSMLHEKMKPTSKYYDPKFPPKIQLTERTVRYSQADVDAWIQ 312 Query: 65 Q 65 Sbjct: 313 A 313 >UniRef50_B0KMB7 Phage transcriptional regulator, AlpA n=1 Tax=Pseudomonas putida GB-1 RepID=B0KMB7_PSEPG Length = 69 Score = 61.4 bits (148), Expect = 8e-09, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 6/59 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 +LRLP V G++++ IY + FP LG SV W ++ W++++ Sbjct: 10 LLRLPGVCALVGLSKSQIYRLIRA------GEFPAGISLGANSVAWPAEQVSAWVAEKI 62 >UniRef50_Q2YAI6 Phage transcriptional regulator, AlpA n=1 Tax=Nitrosospira multiformis ATCC 25196 RepID=Q2YAI6_NITMU Length = 76 Score = 61.4 bits (148), Expect = 9e-09, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 6/65 (9%) Query: 2 NNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDE 61 + I R+P V TG++R++IY FP + L +VGW EI Sbjct: 8 DAAPWYEIYRIPRVKGLTGLSRSSIYRL------EALGLFPGRVKLSGSAVGWRSDEIHA 61 Query: 62 WLSQR 66 W++ R Sbjct: 62 WIASR 66 >UniRef50_A4JR07 Phage transcriptional regulator, AlpA n=6 Tax=Burkholderia RepID=A4JR07_BURVG Length = 83 Score = 61.1 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 6/64 (9%) Query: 2 NNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDE 61 N+ A ILR V Q TG++R+TIY + + TFP LG + VGW A+I++ Sbjct: 4 NDDGARTILRRRQVEQCTGLSRSTIYKRMQ------EGTFPPAIALGGRMVGWRAADIEQ 57 Query: 62 WLSQ 65 +L+ Sbjct: 58 FLAD 61 >UniRef50_B1JDS6 Phage transcriptional regulator, AlpA n=2 Tax=Pseudomonadaceae RepID=B1JDS6_PSEPW Length = 74 Score = 60.7 bits (146), Expect = 1e-08, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 6/60 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 + ++ V TG++R+ IY + + TFP++ L K V W+EAEI W +R Sbjct: 13 KFIKRQDVEAITGLSRSEIYRRMAAQ------TFPQQIALSPKCVVWVEAEILTWCDERI 66 >UniRef50_A3UV40 Transcriptional regulator, putative n=2 Tax=Proteobacteria RepID=A3UV40_VIBSP Length = 74 Score = 60.3 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 6/63 (9%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 + +++++L AVI+ T ++R+ IY + + FPK+ L +SV W+E++I W+ Sbjct: 12 NKIKLIKLEAVIEMTTLSRSAIYRGIR------ECRFPKQVRLSRRSVAWVESDIQNWIK 65 Query: 65 QRC 67 + Sbjct: 66 AQV 68 >UniRef50_Q2T3P9 Prophage regulatory protein AlpA family protein n=3 Tax=pseudomallei group RepID=Q2T3P9_BURTA Length = 72 Score = 59.5 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 35/61 (57%), Gaps = 6/61 (9%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 RI+R+PA++++ G++ + + + TFP+ LG +++G++ A++D WL Sbjct: 11 QPRRIVRMPALLERVGLSESEVRRRIKA------GTFPRPVKLGPRAIGFVVADVDAWLE 64 Query: 65 Q 65 Sbjct: 65 A 65 >UniRef50_B1Y1X4 Phage transcriptional regulator, AlpA n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y1X4_LEPCP Length = 75 Score = 59.5 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 6/58 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 LR+ AV + TG+ R+TIY + +A FP L +++ W A++D W ++R Sbjct: 19 FLRIGAVTKLTGLGRSTIYRLMA------EAKFPTPVRLSSRAIAWRRADLDRWSAER 70 >UniRef50_D2NHT3 Hypothetical phage protein n=1 Tax=Escherichia coli SE15 RepID=D2NHT3_ECOLX Length = 65 Score = 59.1 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 12/71 (16%) Query: 1 MNNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLG---VKSVGWIEA 57 MN RILR V+ TG++ AT+Y ++ FP + L ++VGW+E+ Sbjct: 1 MNTN---RILRKKEVLHLTGISSATLYRLISK------GFFPLSKRLTGDNGRAVGWLES 51 Query: 58 EIDEWLSQRCK 68 +I+ W++ R + Sbjct: 52 DINNWVNSRMQ 62 >UniRef50_D0M3I3 Predicted transcriptional regulator n=1 Tax=Vibrio sp. Ex25 RepID=D0M3I3_VIBSE Length = 62 Score = 59.1 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 6/61 (9%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 + L L V KT + ++TIY + + FPK + KS W E E+++W+ + Sbjct: 2 LNFLNLEQVETKTTLCKSTIYKLMK------NGEFPKNFTVSGKSKAWDEKEVEDWMMSK 55 Query: 67 C 67 Sbjct: 56 I 56 >UniRef50_A6B241 Conserved domain protein n=2 Tax=Vibrio parahaemolyticus RepID=A6B241_VIBPA Length = 79 Score = 58.8 bits (141), Expect = 5e-08, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 6/59 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 R +++ V+++T +RA IY + FP L V W E+E+D W+ +R Sbjct: 5 RYMKIGEVLERTSYSRAQIYRLMKS------GEFPSSYRLSKNRVAWKESEVDAWVEER 57 >UniRef50_A2PQ69 Prophage CP4-57 regulatory protein (AlpA) n=1 Tax=Vibrio cholerae MZO-3 RepID=A2PQ69_VIBCH Length = 129 Score = 58.4 bits (140), Expect = 6e-08, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 31/58 (53%), Gaps = 6/58 (10%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 ++++R + + TG++RA +Y + + FP++ +G ++ WI E+ W+ Sbjct: 1 MQLIRRKELSELTGISRAHLYLLI------GEGKFPRQIHIGKRASAWIVEEVQAWVD 52 >UniRef50_C4KAH0 Phage transcriptional regulator, AlpA n=1 Tax=Thauera sp. MZ1T RepID=C4KAH0_THASP Length = 109 Score = 58.4 bits (140), Expect = 7e-08, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 5/57 (8%) Query: 10 LRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 LR+ V G AT++ D TFPK L + W +EI+ W+ R Sbjct: 50 LRVKGVAAFLGCGVATVWRRTKD-----DPTFPKPIKLSERVTVWKLSEIEAWVDSR 101 >UniRef50_C8QZM7 Phage transcriptional regulator, AlpA n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QZM7_9DELT Length = 63 Score = 58.0 bits (139), Expect = 8e-08, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 6/62 (9%) Query: 6 AVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 RI+R P + K G++ TI+ FPK+ LG S GW+E E++EW++ Sbjct: 5 PKRIIRKPELWVKVGLSDPTIWRLEKK------GKFPKRLRLGGNSCGWLEHEVNEWINN 58 Query: 66 RC 67 R Sbjct: 59 RA 60 >UniRef50_Q6AR72 Putative uncharacterized protein n=1 Tax=Desulfotalea psychrophila RepID=Q6AR72_DESPS Length = 90 Score = 58.0 bits (139), Expect = 9e-08, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 6/63 (9%) Query: 4 RSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 R +RLP V TG + A+IY + +S FPK + +G ++V W +I +L Sbjct: 24 NHPERRIRLPEVKTLTGYSTASIYAKMANQS------FPKAQKMGGRAVAWRLQDILAFL 77 Query: 64 SQR 66 R Sbjct: 78 EGR 80 >UniRef50_C5CXN0 Phage transcriptional regulator, AlpA n=2 Tax=Variovorax paradoxus S110 RepID=C5CXN0_VARPS Length = 88 Score = 57.6 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 6/57 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 R+ VI+ T ++R T+Y + D FP LG ++ GW A + W+ Sbjct: 22 FFRMADVIRITALSRTTVYRRIA------DGKFPPPVHLGGRASGWPRAALQRWIDD 72 >UniRef50_B2PZ48 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae RepID=B2PZ48_PROST Length = 71 Score = 57.6 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 36/60 (60%), Gaps = 7/60 (11%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRML-GVKSVGWIEAEIDEWLSQR 66 +++++ V+++ ++RAT+Y ++ K FP + + G +SV W E EI +W++ R Sbjct: 14 KLIKIHEVLRRCAISRATLYRLISKKC------FPNQVSVTGSRSVAWREDEIQKWINDR 67 >UniRef50_Q0A9S3 Phage transcriptional regulator, AlpA n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A9S3_ALHEH Length = 75 Score = 57.2 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 6/60 (10%) Query: 6 AVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 R+++ VI TG++ +TI+ + FP + LG + W E+++ EWL+ Sbjct: 10 PSRLMKKREVIDVTGLSESTIWRR------EQEGRFPPRIRLGQRMTVWRESDVHEWLAD 63 >UniRef50_A6Q4M7 Transcriptional regulator n=1 Tax=Nitratiruptor sp. SB155-2 RepID=A6Q4M7_NITSB Length = 64 Score = 56.8 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 6/59 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 R++ + V GM + TIY ++ D FPK +G+++ W E+ +W+ +R Sbjct: 10 RLIDIKEVSSLIGMKKPTIYKYIR------DGKFPKPIKIGIRASRWSFNEVMQWIEER 62 >UniRef50_A0Q4W2 Regulatory protein, AlpA family n=3 Tax=Francisella RepID=A0Q4W2_FRATN Length = 72 Score = 56.8 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 6/66 (9%) Query: 3 NRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEW 62 N R+LR V + GM++ +I+ FPK+ + ++ W+E+E+ EW Sbjct: 6 NNELPRLLRAEEVARCIGMSKNSIFRMARA------GKFPKQIRVSGQTTAWLESEVREW 59 Query: 63 LSQRCK 68 +++R K Sbjct: 60 IAKRVK 65 >UniRef50_Q75SW7 Putative uncharacterized protein n=1 Tax=Escherichia coli RepID=Q75SW7_ECOLX Length = 74 Score = 56.4 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 12/71 (16%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRML------GVKSVGWIEAE 58 + +R++++ V++ +RAT+Y + FP+ L +SV W E E Sbjct: 2 TTLRLIKIKTVLEYCAFSRATLYRQIKA------GHFPEPVRLTGGVNASSRSVAWREEE 55 Query: 59 IDEWLSQRCKL 69 + W++ R K+ Sbjct: 56 VQLWITSRQKV 66 >UniRef50_A9IES4 Predicted transcriptional regulator n=1 Tax=Bordetella petrii DSM 12804 RepID=A9IES4_BORPD Length = 86 Score = 56.4 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 6/57 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 RL V++ ++R+T+Y + + FP LG ++ W ++ EW++ Sbjct: 22 FYRLRDVVRIAALSRSTVYRRIA------EGRFPAPIHLGGRASAWPSNDLQEWINS 72 >UniRef50_D0M1L9 Predicted transcriptional regulator n=1 Tax=Vibrio sp. Ex25 RepID=D0M1L9_VIBSE Length = 96 Score = 56.1 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 6/59 (10%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 + ++I + V+++ G+++AT++ +N D TFP LG K+VG++ E+D +L Sbjct: 8 NQLKIEKKADVLKRVGLSQATLHRRIN------DGTFPPAVQLGPKAVGFMSHEVDAFL 60 >UniRef50_C6MJ06 Phage transcriptional regulator, AlpA n=1 Tax=Nitrosomonas sp. AL212 RepID=C6MJ06_9PROT Length = 76 Score = 56.1 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 6/64 (9%) Query: 4 RSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 + + RL + Q+ ++ ++I+ W FPK L W E+D W+ Sbjct: 10 NISPQFYRLNHLKQRLAVSGSSIWAWTKS------GKFPKPIKLSENCTAWSAVEVDAWV 63 Query: 64 SQRC 67 R Sbjct: 64 QDRI 67 >UniRef50_D0J4D1 Phage transcriptional regulator, AlpA n=1 Tax=Comamonas testosteroni CNB-2 RepID=D0J4D1_COMTE Length = 283 Score = 56.1 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 6/63 (9%) Query: 3 NRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEW 62 +R ++ + V+ +TG++R+ +Y L FP + +++GW E +++ W Sbjct: 7 SRFTKNVIPMDEVLTRTGLSRSMLYKLLRKDK------FPHPTPMSNRAIGWFETDVENW 60 Query: 63 LSQ 65 L Sbjct: 61 LQA 63 >UniRef50_Q1QLR6 Phage transcriptional regulator, AlpA n=1 Tax=Nitrobacter hamburgensis X14 RepID=Q1QLR6_NITHX Length = 68 Score = 56.1 bits (134), Expect = 4e-07, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 6/54 (11%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEW 62 +L+L V + TG+ R+TIY ++ TFP L V W + W Sbjct: 3 LLKLTDVTKATGLGRSTIYRKISEN------TFPPPLQLSPGCVRWDADHLQAW 50 >UniRef50_A4XZH5 Phage transcriptional regulator, AlpA n=3 Tax=Pseudomonas RepID=A4XZH5_PSEMY Length = 78 Score = 55.7 bits (133), Expect = 5e-07, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 7/58 (12%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 +L+LP V ++ G + IY + + TFP+ +G S W + E+ W+ ++ Sbjct: 21 LLQLPEVCRQAGFGKTAIYRMMK------EGTFPEPIKIGPAS-RWSQIEVQAWIEKQ 71 >UniRef50_Q2Y6Z7 Phage transcriptional regulator, AlpA n=6 Tax=Proteobacteria RepID=Q2Y6Z7_NITMU Length = 83 Score = 55.7 bits (133), Expect = 5e-07, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 6/59 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 ILRLPAV ++G +R+TIY + +PK LG +SVGW +E+ + R Sbjct: 5 ILRLPAVKAESGASRSTIYLRIQQ------GLWPKPVRLGPRSVGWPASEVAAINAARI 57 >UniRef50_B5J7B4 Transcriptional regulator, AlpA family n=1 Tax=Octadecabacter antarcticus 307 RepID=B5J7B4_9RHOB Length = 62 Score = 55.3 bits (132), Expect = 5e-07, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 6/61 (9%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 ++L+ V + TG +R TIY + + FP+ G SV W +++ +W+ Sbjct: 4 QLLKRRVVEEMTGFSRTTIYRLMA------EGRFPRPLRTGENSVRWRMSDLQKWMDALA 57 Query: 68 K 68 + Sbjct: 58 E 58 >UniRef50_D0Z915 Putative uncharacterized protein n=1 Tax=Edwardsiella tarda EIB202 RepID=D0Z915_EDWTE Length = 64 Score = 55.3 bits (132), Expect = 6e-07, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 9/62 (14%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGV---KSVGWIEAEIDEWLS 64 RILR V+Q+ G++ A++Y + FP L ++VGW+ ++ID W+S Sbjct: 5 RILRKKEVLQRIGISNASLYRLIAK------GLFPTGIKLTGQEGRAVGWLSSDIDNWIS 58 Query: 65 QR 66 R Sbjct: 59 NR 60 >UniRef50_D2MIG9 Prophage CP4-57 regulatory n=2 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MIG9_9BACT Length = 81 Score = 54.9 bits (131), Expect = 8e-07, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 6/58 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 +L V ++TG++R+T+Y + + TFP + ++V W + +I ++ R Sbjct: 21 LLTRREVERRTGLSRSTLYRKMR------NGTFPVPVKVSERAVRWRDRDIRAYVESR 72 >UniRef50_D0W4G6 Conserved domain protein n=1 Tax=Neisseria cinerea ATCC 14685 RepID=D0W4G6_NEICI Length = 147 Score = 54.9 bits (131), Expect = 8e-07, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 29/57 (50%) Query: 10 LRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 L L ++ TG+ R + ++ P YD+ FP +G ++ W A+++ W S R Sbjct: 5 LNLKELMSLTGLKRGMVERLMHKNDPAYDSAFPAPVPVGRNALRWRRADVERWQSGR 61 >UniRef50_B1LN65 Transcriptional regulator, AlpA family n=8 Tax=Escherichia RepID=B1LN65_ECOSM Length = 74 Score = 54.9 bits (131), Expect = 8e-07, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 6/59 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 R++R + TG++R T Y+ FP +R LG +SVGW+ +E+ +W+ R Sbjct: 13 RVIREDECRKLTGVSRTTRYELEKK------GGFPSRRNLGGRSVGWLLSEVMDWVQSR 65 >UniRef50_UPI00019078FB hypothetical protein RetlG_16275 n=1 Tax=Rhizobium etli GR56 RepID=UPI00019078FB Length = 61 Score = 54.9 bits (131), Expect = 8e-07, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 7/60 (11%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 R +RL V + G+ + IY + FPK LG S W ++ W+S+R Sbjct: 6 RFIRLADVQEMIGLKDSRIYQMIKA------GEFPKPIKLGASS-RWSLRAVEAWMSERA 58 >UniRef50_A6VCA3 Transcriptional regulator, AlpA family n=2 Tax=Pseudomonas RepID=A6VCA3_PSEA7 Length = 70 Score = 54.9 bits (131), Expect = 8e-07, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 4/60 (6%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 ++ILR AV +K G I D + R D TFP + + VGW+E EID WL Q+ Sbjct: 1 MQILRRKAVCEKLG----GINDVTLWRITRDDPTFPASIQINKRVVGWLEHEIDAWLGQK 56 >UniRef50_B6R1G6 Putative regulatory protein encoded in prophage CP-933I n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R1G6_9RHOB Length = 66 Score = 54.9 bits (131), Expect = 9e-07, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 6/61 (9%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 R L P V G++R+TIY L+ + FP L +SV W +EI W + Sbjct: 7 RYLARPEVEAVLGLSRSTIYKLLS------EDDFPPPTRLIGRSVRWRLSEIMSWAENKR 60 Query: 68 K 68 K Sbjct: 61 K 61 >UniRef50_Q63RT8 Putative uncharacterized protein n=1 Tax=Burkholderia pseudomallei RepID=Q63RT8_BURPS Length = 69 Score = 54.5 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 5/66 (7%) Query: 2 NNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDE 61 + R LR V QK G+ A+++ + D FP+ L ++ + E+EID Sbjct: 3 DLNLQDRYLRPAGVAQKLGVCVASVWARVKS-----DPAFPRPIKLSARTTVFAESEIDA 57 Query: 62 WLSQRC 67 ++ QR Sbjct: 58 YVRQRA 63 >UniRef50_C6XEE2 Phage transcriptional regulator, AlpA n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6XEE2_METSD Length = 82 Score = 54.5 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 10/58 (17%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 R++ L V + G R+TIY+ + K TFP G+ W+E+EID+++ Sbjct: 16 RLIGLAEVSNRVGKGRSTIYERIKNK------TFPAPVEPGL----WLESEIDQYIDD 63 >UniRef50_B0RUQ9 Hypothetical 9.7 kDa protein n=1 Tax=Xanthomonas campestris pv. campestris str. B100 RepID=B0RUQ9_XANCB Length = 94 Score = 54.5 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 6/56 (10%) Query: 11 RLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 RLP+V+ + G +RA++Y + FP +G +++GW +D W+++R Sbjct: 36 RLPSVLARVGRSRASLYRDIAA------GQFPSPVKIGERAIGWDPRVVDNWIAER 85 >UniRef50_B5F477 Conserved domain protein n=2 Tax=Salmonella enterica subsp. enterica RepID=B5F477_SALA4 Length = 76 Score = 54.1 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 33/59 (55%), Gaps = 6/59 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 ++ V+++ ++A +Y L+ TFP+ +G +++ ++E+E+D W+ ++ Sbjct: 13 LISAKEVLRRVQRSKAWLYKQLSNN------TFPRPVKIGTRAISFVESEVDHWIQEQI 65 >UniRef50_Q0F0R8 Putative uncharacterized protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F0R8_9PROT Length = 60 Score = 54.1 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 6/62 (9%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 ++ +R + ++ ++R I+ FPK+ L +VGW AEIDEWL QR Sbjct: 1 MQTIRFAQLQKRVPLSRTQIWRL------ERQGLFPKRIQLSANTVGWDAAEIDEWLQQR 54 Query: 67 CK 68 + Sbjct: 55 KE 56 >UniRef50_Q1NGR7 Putative uncharacterized protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NGR7_9SPHN Length = 65 Score = 53.7 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 6/58 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 + LRL AVI KTG +A+IY + + TFP +G ++V W + I W+ Sbjct: 7 QFLRLRAVIAKTGKPKASIYRDI------HLGTFPAPEKIGARAVAWRLSRILRWMQA 58 >UniRef50_Q13ZB8 Phage transcriptional regulator, AlpA n=1 Tax=Burkholderia xenovorans LB400 RepID=Q13ZB8_BURXL Length = 103 Score = 53.7 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 33/58 (56%), Gaps = 6/58 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 R++R+P ++Q + R TIY+ + + P+ L ++ GW+ +EI+E +++ Sbjct: 44 RVIRMPDLLQMYPVGRTTIYELIKMQKL------PRPIALSKRARGWVLSEIEECIAK 95 >UniRef50_C0GR58 Phage transcriptional regulator, AlpA n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GR58_9DELT Length = 62 Score = 53.7 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 6/63 (9%) Query: 3 NRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEW 62 + ++LRL V+ + ++++T +D + FPK LG ++ W E++ID+ Sbjct: 2 DNQTEKLLRLRDVLDRIPVSKSTWWDGVKK------GRFPKPIKLGPRTTCWKESDIDDL 55 Query: 63 LSQ 65 +++ Sbjct: 56 INK 58 >UniRef50_Q8DF51 Predicted phage-specific transcriptional regulator n=1 Tax=Vibrio vulnificus RepID=Q8DF51_VIBVU Length = 86 Score = 53.4 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 32/63 (50%), Gaps = 6/63 (9%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 + ++ + L VI+ + + IYD + FP + +G ++ +I++E++ +L+ Sbjct: 2 NELQFMSLKEVIELVTLKKTAIYDKIKK------GEFPPQIRMGGNTIVFIKSELEFYLA 55 Query: 65 QRC 67 + Sbjct: 56 SKI 58 >UniRef50_A1W718 Phage transcriptional regulator, AlpA n=1 Tax=Acidovorax sp. JS42 RepID=A1W718_ACISJ Length = 143 Score = 53.4 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 6/57 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 R+ V++ T ++ AT+Y L D FP LG ++ GW + W+ Sbjct: 33 FFRIAEVMRITVLSSATVYRRLA------DGIFPPPVHLGGRACGWTPVALQAWIEN 83 >UniRef50_C6DZ79 Phage transcriptional regulator, AlpA n=1 Tax=Geobacter sp. M21 RepID=C6DZ79_GEOSM Length = 73 Score = 53.4 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 6/59 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 +++R ++ G++R T + FP + LG SVGW E++EW+ R Sbjct: 5 KLIRRKQMLALIGLSRTTQWRLEKA------GRFPTRVRLGPGSVGWHLTEVEEWVRGR 57 >UniRef50_B2JD58 Phage transcriptional regulator, AlpA n=1 Tax=Burkholderia phymatum STM815 RepID=B2JD58_BURP8 Length = 75 Score = 53.4 bits (127), Expect = 3e-06, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 6/60 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRCK 68 ++ + + G+ R+ Y ++ D TFPK +G +V W+E+E+ W+ ++ Sbjct: 9 LIPRRRMSELCGLQRSATYQRVS------DGTFPKPVTIGSAAVRWVESEVISWVQRQID 62 >UniRef50_A7MSH2 Putative uncharacterized protein n=1 Tax=Vibrio harveyi ATCC BAA-1116 RepID=A7MSH2_VIBHB Length = 81 Score = 53.4 bits (127), Expect = 3e-06, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 6/60 (10%) Query: 4 RSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 ++I R V+ + ++AT++ ++N FP LG ++VG+ E+DE+L Sbjct: 2 NIEIKIERKNQVLSRVSFSKATLHRYINC------GKFPPPISLGGRAVGFFSHEVDEYL 55 >UniRef50_C8X398 Phage transcriptional regulator, AlpA n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X398_DESRD Length = 74 Score = 53.0 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 6/57 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 ++LRL V+ + + R + ++ + FP+ LG ++ W E +ID ++ Sbjct: 7 KLLRLKDVLDRVPVGRTSWWNGVKK------GIFPQPIKLGPRTTCWREEDIDAFIE 57 >UniRef50_A1Z2Q5 Putative uncharacterized protein n=10 Tax=Enterobacteriaceae RepID=A1Z2Q5_ECOLX Length = 62 Score = 53.0 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 6/55 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEW 62 R +R + TG++R Y FP +R LG +SVGW +E+ W Sbjct: 6 RFIREKECEKLTGLSRTCRYRLEKA------GQFPSRRKLGGRSVGWSLSEVLAW 54 >UniRef50_Q1LNC5 Phage transcriptional regulator, AlpA n=14 Tax=Proteobacteria RepID=Q1LNC5_RALME Length = 136 Score = 53.0 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 6/61 (9%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 R +R + Q +A TIY+ FP++ L + V W AE++ W+ +R Sbjct: 56 RTIRRQELRQIVPLAETTIYEM------ERRGEFPRRFNLTPRCVVWDLAEVEAWVEERK 109 Query: 68 K 68 + Sbjct: 110 Q 110 >UniRef50_C5V761 Phage transcriptional regulator, AlpA n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V761_9PROT Length = 57 Score = 52.6 bits (125), Expect = 3e-06, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 6/55 (10%) Query: 11 RLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 + V+ ++++T+Y + D FP+ + K VGW++A+ID +++ Sbjct: 4 NIHQVVAAVTLSKSTVYRLIK------DGKFPQPVRISYKRVGWLKADIDSFVAS 52 >UniRef50_Q3SQP6 Prophage CP4-57 regulatory n=4 Tax=Alphaproteobacteria RepID=Q3SQP6_NITWN Length = 98 Score = 52.6 bits (125), Expect = 3e-06, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 6/65 (9%) Query: 2 NNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDE 61 N R +R + + +A +TIY+ FP++ L + V W AE++ Sbjct: 5 NGAPIKRTIRRHQLREMVPLADSTIYEM------EQRGEFPRRFALSPRCVVWDLAEVEA 58 Query: 62 WLSQR 66 WL+ R Sbjct: 59 WLAAR 63 >UniRef50_A1TSI2 Phage transcriptional regulator, AlpA n=1 Tax=Acidovorax citrulli AAC00-1 RepID=A1TSI2_ACIAC Length = 117 Score = 52.6 bits (125), Expect = 4e-06, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 6/61 (9%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 R +R + Q +A TIY+ FP++ L + V W E++ W+ R Sbjct: 39 RTIRRHELHQIVPLAETTIYEM------EQRGEFPRRFRLTARCVVWDLEEVEAWIEDRK 92 Query: 68 K 68 + Sbjct: 93 Q 93 >UniRef50_B8KK13 Transcriptional regulator, AlpA family n=3 Tax=Gammaproteobacteria RepID=B8KK13_9GAMM Length = 82 Score = 52.6 bits (125), Expect = 4e-06, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 8/55 (14%) Query: 15 VIQKTGMARATIYDWLNPKSPRYDATFPKKRML--GVKSVGWIEAEIDEWLSQRC 67 V TG++R+ IY FPK L G S W+E+E+ +WL QR Sbjct: 24 VQDLTGLSRSYIYAL------AAQGRFPKSVALVPGGTSRAWVESEVFDWLEQRI 72 >UniRef50_A1VSK2 Phage transcriptional regulator, AlpA n=1 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VSK2_POLNA Length = 74 Score = 52.2 bits (124), Expect = 5e-06, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 6/58 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 I R V++K G++ T+ W+ D FP+ + LG ++VGW+ ++ WL +R Sbjct: 11 IYRKKVVLEKFGISETTLRRWMQ------DEGFPRPKQLGPRAVGWVVDQVGAWLEKR 62 >UniRef50_A2CBA2 Predicted transcriptional regulator n=3 Tax=Prochlorococcus marinus RepID=A2CBA2_PROM3 Length = 65 Score = 52.2 bits (124), Expect = 6e-06, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 28/51 (54%), Gaps = 6/51 (11%) Query: 18 KTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRCK 68 T ++++TIY + K FP++ +G + V W + + +W++Q+ + Sbjct: 1 MTSLSKSTIYKMIAEKK------FPRQIQIGPQQVVWTKHAVQDWMNQKIQ 45 >UniRef50_B5N8F3 Conserved domain protein n=1 Tax=Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433 RepID=B5N8F3_SALET Length = 62 Score = 52.2 bits (124), Expect = 6e-06, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 6/58 (10%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEW 62 S ++ + V + G+ +++IY+ ++ FPK + LG ++ W+ E++EW Sbjct: 6 SDTDLINIKEVERSVGLKKSSIYERISNN------EFPKPKKLGSRTSRWVRGEVEEW 57 >UniRef50_C5CKX5 Phage transcriptional regulator, AlpA n=1 Tax=Variovorax paradoxus S110 RepID=C5CKX5_VARPS Length = 90 Score = 51.4 bits (122), Expect = 8e-06, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 6/57 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 R+ VI+ T ++RAT+Y FP + LG + GW + +W+ Sbjct: 22 FFRMADVIRITALSRATLYRRTAG------CKFPPQVHLGGHACGWPRGALQQWIDD 72 >UniRef50_Q47DU8 Prophage CP4-57 regulatory n=2 Tax=Dechloromonas aromatica RCB RepID=Q47DU8_DECAR Length = 91 Score = 51.0 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 29/60 (48%), Gaps = 6/60 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRCK 68 LR P V+ ++++T++ + + TFP+ L + W +I W++Q+ + Sbjct: 36 FLRQPQVLAFVPISKSTLWRRIQAR------TFPEPVKLSERVTVWRAEDIRRWIAQQGQ 89 >UniRef50_Q7U5P1 Possible transcription regulator n=2 Tax=Synechococcus sp. WH 8102 RepID=Q7U5P1_SYNPX Length = 47 Score = 51.0 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 6/49 (12%) Query: 18 KTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 TG++ +TIY W+ D TFPK+ LG + W E ++ +W++ + Sbjct: 1 MTGLSISTIYRWM------TDGTFPKQIQLGSRYDVWNERDVIDWMNAQ 43 >UniRef50_A7ZI04 Prophage CP4-57 regulatory protein n=1 Tax=Escherichia coli E24377A RepID=A7ZI04_ECO24 Length = 72 Score = 51.0 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 36/60 (60%), Gaps = 6/60 (10%) Query: 6 AVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 R++R+ +I+ ++R T++ W+N + FP+ R + +++GW ++ +EWLS+ Sbjct: 17 PQRLIRINHMIELLAVSRTTLWRWVN------EGVFPEPRKIQGRTLGWTASQYEEWLSK 70 >UniRef50_D2LHF0 Phage transcriptional regulator, AlpA n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LHF0_RHOVA Length = 80 Score = 51.0 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 6/61 (9%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRCK 68 +LR V + G + + +Y + FP+ LG K W E E++ + R Sbjct: 4 LLRRDDVRARLGCSVSNLYSQMAA------GMFPRPIKLGPKYSAWPEYEVEAIIKSRVA 57 Query: 69 L 69 L Sbjct: 58 L 58 >UniRef50_A9BBH2 Predicted transcriptional regulator n=1 Tax=Prochlorococcus marinus str. MIT 9211 RepID=A9BBH2_PROM4 Length = 46 Score = 50.7 bits (120), Expect = 1e-05, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 6/48 (12%) Query: 21 MARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRCK 68 M+R TIY+ + + TFPK+ +G V W+E ++ +W+ ++ Sbjct: 1 MSRGTIYNKI------HAGTFPKQIPIGANLVVWLERDVQQWMQEQVD 42 >UniRef50_A1SRJ4 Phage transcriptional regulator, AlpA n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SRJ4_PSYIN Length = 70 Score = 50.3 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 6/51 (11%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEA 57 ++ +R+ V+ +TG++R+ +Y + + TFP+ L +V W+E+ Sbjct: 1 MKFIRIKEVLNRTGLSRSVLYAKVAAQ------TFPQSFTLSGSTVAWLES 45 >UniRef50_B8K6F3 Transcriptional regulator, AlpA family n=2 Tax=Gammaproteobacteria RepID=B8K6F3_VIBPA Length = 73 Score = 50.3 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 6/63 (9%) Query: 4 RSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 + R++R T ++R+ + FPK+R LG +SV W+ +EI EW+ Sbjct: 14 KPTDRLIREEERRALTSISRSQAWVL------EQKGQFPKRRKLGNRSVAWVLSEIMEWI 67 Query: 64 SQR 66 R Sbjct: 68 ETR 70 >UniRef50_B6XJ47 Putative uncharacterized protein n=1 Tax=Providencia alcalifaciens DSM 30120 RepID=B6XJ47_9ENTR Length = 65 Score = 49.9 bits (118), Expect = 3e-05, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 6/59 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 +L + V + + ++TIY+ + K FP + +GV++ W+ EI+EW QR Sbjct: 11 LLTMKEVEKLVTLKKSTIYEMIKRK------EFPSQHKIGVRAARWLRREINEWKQQRT 63 >UniRef50_B0UVF0 Phage transcriptional regulator, AlpA n=4 Tax=Pasteurellaceae RepID=B0UVF0_HAES2 Length = 73 Score = 49.5 bits (117), Expect = 3e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 7/58 (12%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 +++ + V TG + TIY +N FPK + G +S W A+I+ +++ Sbjct: 23 KLINIEDVKAITGFSTTTIYKLMNK------GEFPKAKKCG-RSTRWRLADIESYIAS 73 >UniRef50_A7HPY0 Phage transcriptional regulator, AlpA n=2 Tax=Alphaproteobacteria RepID=A7HPY0_PARL1 Length = 75 Score = 49.5 bits (117), Expect = 4e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 4/62 (6%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 +++ + G+ Y + FPK+ LG V W+ +E++ WL R Sbjct: 7 QVVSKKELKTVCGIP----YSGQHIARLEAAGAFPKRIRLGQNRVVWLLSEVEAWLDARI 62 Query: 68 KL 69 L Sbjct: 63 AL 64 >UniRef50_Q98MP9 Mll0486 protein n=1 Tax=Mesorhizobium loti RepID=Q98MP9_RHILO Length = 76 Score = 48.7 bits (115), Expect = 5e-05, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 33/62 (53%), Gaps = 5/62 (8%) Query: 4 RSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 + +L +P V G++R T+ ++ +FP+K+ +G + VG++ ++I+ ++ Sbjct: 16 NQSAIVLSIPQVCATLGISRPTLDRYIKDN-----PSFPRKKKIGPRLVGFLRSDIETYI 70 Query: 64 SQ 65 Sbjct: 71 GS 72 >UniRef50_A7FES1 AlpA family protein n=29 Tax=Enterobacteriaceae RepID=A7FES1_YERP3 Length = 69 Score = 48.7 bits (115), Expect = 5e-05, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 7/49 (14%) Query: 20 GMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRCK 68 GM+ Y ++ D TFPK LG +S W+ +E+ WL R + Sbjct: 23 GMSDKWFYKLIS------DGTFPKPIKLG-RSSRWLHSEVQAWLQARIE 64 >UniRef50_Q21H24 Phage transcriptional regulator, AlpA n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21H24_SACD2 Length = 92 Score = 48.7 bits (115), Expect = 5e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 6/62 (9%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 S ++I+R AV+ + G ++ + D + P LG ++VGW++ EI+ ++ Sbjct: 4 STLKIIRREAVLNRFGRSKTWLADQVTS------GLVPPPISLGGRAVGWLDHEINAVIA 57 Query: 65 QR 66 R Sbjct: 58 AR 59 >UniRef50_Q74H30 Putative uncharacterized protein n=1 Tax=Geobacter sulfurreducens RepID=Q74H30_GEOSL Length = 73 Score = 48.7 bits (115), Expect = 6e-05, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 6/60 (10%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 R++RL V+ G + AT++ W FP++R +G+++V W E++EW R Sbjct: 2 GRMIRLAEVLSVAGCSEATLWRWERA------GLFPRRRRIGLRAVAWDSEEVEEWRRTR 55 >UniRef50_A1W8X8 Phage transcriptional regulator, AlpA n=26 Tax=Proteobacteria RepID=A1W8X8_ACISJ Length = 81 Score = 48.7 bits (115), Expect = 6e-05, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 6/66 (9%) Query: 1 MNNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEID 60 M ++ ++ ++ ++ TI++ FP++ L ++V W AE++ Sbjct: 1 MQATTSKTLINRKKLLAMIPLSERTIFNM------EQRGEFPRRIALTSRNVAWDLAEVE 54 Query: 61 EWLSQR 66 EW+ R Sbjct: 55 EWIEAR 60 >UniRef50_A6TCN1 Putative uncharacterized protein n=9 Tax=Enterobacteriaceae RepID=A6TCN1_KLEP7 Length = 71 Score = 48.7 bits (115), Expect = 6e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 6/60 (10%) Query: 10 LRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRCKL 69 +R+ V+Q M+ +++Y + + FP+ L + V + AEI +W +R + Sbjct: 17 VRMRQVVQFLAMSESSVYRLIK------NTDFPRPVHLSSRLVVFDAAEIRQWQQRRTAI 70 >UniRef50_Q0TV65 Phage AlpA family protein n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q0TV65_THICR Length = 64 Score = 48.7 bits (115), Expect = 6e-05, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 7/68 (10%) Query: 1 MNNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEID 60 M ++ ++L LP V G+ ++ IY + FPK R++ K++ W+ +EI Sbjct: 1 MIDKVPEQLLPLPKVEMMIGLKKSKIYALIKT------GEFPKNRVIKGKAL-WLSSEIQ 53 Query: 61 EWLSQRCK 68 W+S++ + Sbjct: 54 NWISEQWQ 61 >UniRef50_C7I2T3 Phage transcriptional regulator, AlpA n=1 Tax=Thiomonas intermedia K12 RepID=C7I2T3_THIIN Length = 72 Score = 48.4 bits (114), Expect = 7e-05, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 6/56 (10%) Query: 11 RLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 RLP +++ G+ R+T+Y W+ FP +G + W AE++E+L +R Sbjct: 10 RLPFLLETFGLKRSTVYFWIRK------GNFPPPYKVGDRCSLWDIAEVEEYLRRR 59 >UniRef50_B0KSV2 Phage transcriptional regulator, AlpA n=1 Tax=Pseudomonas putida GB-1 RepID=B0KSV2_PSEPG Length = 55 Score = 48.4 bits (114), Expect = 8e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 7/58 (12%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 +L V ++ G + +Y + + FPK R +G +S W+E+E+D+W+ + Sbjct: 5 LLDRKEVCKRIGFSHTFVYKEMR------EGRFPKHRKIGNRS-RWLESEVDDWIRSQ 55 >UniRef50_B8L8F8 Transcriptional regulator, AlpA family n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L8F8_9GAMM Length = 84 Score = 48.0 bits (113), Expect = 9e-05, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 7/58 (12%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 +L+L V +TGM ++ IY ++ TFP K +G W +++I W+ R Sbjct: 11 LLKLEQVEAQTGMKKSYIYREMD------RGTFPPKHKVGGG-TRWYQSDIQRWIRAR 61 >UniRef50_D2TST7 Puative transcriptional regulator n=77 Tax=Enterobacteriaceae RepID=D2TST7_CITRO Length = 68 Score = 48.0 bits (113), Expect = 9e-05, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 7/53 (13%) Query: 15 VIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 + Q TG+ Y + D FP LG +S W+++E++ WL R Sbjct: 18 ITQLTGLTDKWFYKLIK------DGAFPAPIKLG-RSSRWLKSEVEAWLQARI 63 >UniRef50_B2JS19 Phage transcriptional regulator, AlpA n=1 Tax=Burkholderia phymatum STM815 RepID=B2JS19_BURP8 Length = 96 Score = 48.0 bits (113), Expect = 9e-05, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 7/65 (10%) Query: 3 NRSAVRI-LRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDE 61 + A++I L L V Q ++++T+ + K FP+ R+L + VGW+ E+ Sbjct: 22 GKVAMKICLSLKEVAQALSLSQSTVQQLVREK------RFPEPRLLSGRRVGWLTHEVQN 75 Query: 62 WLSQR 66 W + R Sbjct: 76 WANAR 80 >UniRef50_Q0C1G9 Prophage CP4-57 regulatory protein AlpA family protein n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C1G9_HYPNA Length = 61 Score = 47.6 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 5/57 (8%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 +R L L V+ + ++R+ +Y+ + FP +G +SV W+E E++ ++ Sbjct: 1 MRFLSLRDVLDRLTISRSLLYELIKDPVQP----FPAPIHIGRRSV-WVENEVESYM 52 >UniRef50_B6JEJ7 Conserved domain protein n=1 Tax=Oligotropha carboxidovorans OM5 RepID=B6JEJ7_OLICO Length = 79 Score = 47.6 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 6/54 (11%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEW 62 ++ + +V+ T ++R I R D FP LG + V ++ EI++W Sbjct: 12 LVSMKSVVAMTSLSRTMI------NRYRVDGKFPAAVPLGDRRVAFVRNEINDW 59 >UniRef50_A3QCD1 Phage transcriptional regulator, AlpA n=1 Tax=Shewanella loihica PV-4 RepID=A3QCD1_SHELP Length = 52 Score = 47.6 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 10/29 (34%), Positives = 18/29 (62%) Query: 39 ATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 FPK LG + V W+E E+++W++ + Sbjct: 4 GYFPKSVKLGPRLVAWVEEEVEQWIADKI 32 >UniRef50_A4SRW4 Putative uncharacterized protein n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449 RepID=A4SRW4_AERS4 Length = 84 Score = 47.2 bits (111), Expect = 1e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 6/60 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRCK 68 +R+ + + G+A T++ W TFPK L + W E+ W++ + K Sbjct: 29 FVRVDTLAKVLGIAVVTVWRW------SAKGTFPKPVKLSERVTAWRAEEVRSWMNAQGK 82 >UniRef50_D0FM12 Prophage CP4-57 regulatory protein n=2 Tax=Aggregatibacter RepID=D0FM12_AGGAN Length = 61 Score = 47.2 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 6/59 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 +L V++ T ++ TI+ + FP + V W + +ID+W+++R Sbjct: 7 LLSKAKVVEITSLSYTTIWRMIRK------GEFPNSVKASMGRVAWRKQDIDDWIAKRI 59 >UniRef50_A7JWN4 Possible bacteriophage transcriptional regulator n=1 Tax=Mannheimia haemolytica PHL213 RepID=A7JWN4_PASHA Length = 83 Score = 47.2 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 7/59 (11%) Query: 10 LRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRCK 68 L + V + + R+TIY + FPK +G KS W A+I +L + + Sbjct: 29 LNVKDVCEMLQLNRSTIYRQIK------QGIFPKPTKIG-KSSRWKFADIKAFLEPKPQ 80 >UniRef50_B0T8K3 Phage transcriptional regulator, AlpA n=6 Tax=Alphaproteobacteria RepID=B0T8K3_CAUSK Length = 99 Score = 47.2 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 6/62 (9%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 +R +R + + +A TIY+ FP++ L + V W AE++ WL+ Sbjct: 16 PPLRAIRRAQLHKIVPLADTTIYEM------ERRGEFPRRFALTRRCVVWDLAEVETWLA 69 Query: 65 QR 66 +R Sbjct: 70 ER 71 >UniRef50_D2UDR2 Putative regulatory protein, alpa family n=1 Tax=Xanthomonas albilineans RepID=D2UDR2_XANAL Length = 86 Score = 47.2 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 6/66 (9%) Query: 1 MNNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEID 60 M + ++ ++ ++ TI++ FP++ L ++V W AE++ Sbjct: 1 MQTTTNKTLINRKKLLAMIPLSERTIFNM------EQREEFPRRIALTSRNVAWDLAEVE 54 Query: 61 EWLSQR 66 EW+ R Sbjct: 55 EWIEAR 60 >UniRef50_A3LAG5 Putative uncharacterized protein n=1 Tax=Pseudomonas aeruginosa 2192 RepID=A3LAG5_PSEAE Length = 77 Score = 47.2 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 7/55 (12%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEW 62 R + L V +TGM IYD + FPK R G ++ W EAEID++ Sbjct: 12 RFIDLNMVKMRTGMGTTFIYDHMKK------GDFPKGRKFG-RATRWAEAEIDQY 59 >UniRef50_C5BER2 Phage transcriptional regulator, AlpA n=1 Tax=Edwardsiella ictaluri 93-146 RepID=C5BER2_EDWI9 Length = 84 Score = 47.2 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 6/59 (10%) Query: 10 LRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRCK 68 +R ++Q ++ +TIY FPK+ L ++V W + E++ WL + K Sbjct: 5 IRKNVLLQMVPLSESTIYAL------EQKGLFPKRFALTKRAVAWDKEEVENWLKTQQK 57 >UniRef50_Q21UK9 Phage transcriptional regulator, AlpA n=2 Tax=Proteobacteria RepID=Q21UK9_RHOFD Length = 121 Score = 46.8 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%) Query: 7 VRILRLPAVIQKTG-MARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 + ILRL AV+ +TG + A+IY S + TF +G +SVGW E+ + Sbjct: 1 MSILRLRAVLAETGHRSHASIY------SAVHAGTFTMPVQIGERSVGWPSDEVQAINAA 54 Query: 66 RC 67 R Sbjct: 55 RI 56 >UniRef50_A3WKQ1 DNA-binding protein, putative n=1 Tax=Idiomarina baltica OS145 RepID=A3WKQ1_9GAMM Length = 76 Score = 46.8 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 6/62 (9%) Query: 4 RSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 + R++R TG+AR ++ FPK+ LG +SV W +++++W+ Sbjct: 14 KPKDRLVRERECRAITGLARQRRWELEK------QGKFPKRVHLGTRSVAWRLSDLEKWI 67 Query: 64 SQ 65 + Sbjct: 68 DE 69 >UniRef50_Q2NDL4 Putative uncharacterized protein n=1 Tax=Erythrobacter litoralis HTCC2594 RepID=Q2NDL4_ERYLH Length = 64 Score = 46.4 bits (109), Expect = 3e-04, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 7/58 (12%) Query: 9 ILRLPAVIQKTGM-ARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 +L V++ TG+ +RATI+ + TFP +G + W AE++ W++ Sbjct: 6 LLSCQDVMRLTGIRSRATIWRRIKK------GTFPNPVDIGSGRIRWRVAEVENWIND 57 >UniRef50_A1K761 Putative uncharacterized protein n=1 Tax=Azoarcus sp. BH72 RepID=A1K761_AZOSB Length = 89 Score = 46.4 bits (109), Expect = 3e-04, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 6/58 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 L LPAV + ++ +T+ + + FP R + VGW+ E++EW R Sbjct: 13 FLDLPAVAEVVALSESTVQELVRL------GQFPLPRQTSGRRVGWLVREVEEWAESR 64 >UniRef50_B4W815 Transcriptional regulator, AlpA family n=1 Tax=Brevundimonas sp. BAL3 RepID=B4W815_9CAUL Length = 140 Score = 46.0 bits (108), Expect = 4e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 6/59 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 R+L V G++R T + FP ++ V W E+E+ W R Sbjct: 18 RLLPWDRVQDMAGISRTTAWRMQRS------GAFPTPVVVSPGRVAWWESELTAWKGAR 70 >UniRef50_C6C8I1 Phage transcriptional regulator, AlpA n=11 Tax=Enterobacteriaceae RepID=C6C8I1_DICDC Length = 70 Score = 46.0 bits (108), Expect = 4e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 7/61 (11%) Query: 8 RILRLPAVIQKTGMAR-ATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 +IL V ++ ++ + +N FPK +G++ VGW E E++ WLSQR Sbjct: 7 KILLKKEVKAILRVSSDSSFQEMINA------GEFPKGFRIGLRRVGWFEDEVNTWLSQR 60 Query: 67 C 67 Sbjct: 61 I 61 >UniRef50_UPI00016A8C0B phage transcriptional regulator, AlpA n=1 Tax=Burkholderia pseudomallei DM98 RepID=UPI00016A8C0B Length = 72 Score = 46.0 bits (108), Expect = 4e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 8/61 (13%) Query: 10 LRLPAVI--QKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 LR+ +I + ++ TI+ + + TFP L W ++I EW + Sbjct: 13 LRISQLISGRFVPFSKPTIWRKVR------EGTFPAPVKLSAGVTAWKLSDIQEWQRAQL 66 Query: 68 K 68 + Sbjct: 67 E 67 >UniRef50_B3E9V0 Phage transcriptional regulator, AlpA n=1 Tax=Geobacter lovleyi SZ RepID=B3E9V0_GEOLS Length = 58 Score = 46.0 bits (108), Expect = 4e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 6/58 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 R++R+ + Q ++R+ I+D FPK L K+ W + I L Sbjct: 4 RLVRVKELAQILSVSRSKIWD------DVAKGKFPKPFKLSEKTTVWKMSAIQAHLES 55 >UniRef50_A5F3R9 Phage transcriptional regulator, AlpA n=5 Tax=Vibrio cholerae RepID=A5F3R9_VIBC3 Length = 77 Score = 45.7 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 6/60 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 R +R + T ++R+ + + FP + LG +SV W +++ +WL ++ Sbjct: 17 RFVREAERRRITAISRSQAWKLEK------EGRFPPRIKLGSRSVVWRLSDLTQWLDKQA 70 >UniRef50_Q1YTR0 Putative uncharacterized protein n=2 Tax=gamma proteobacterium HTCC2207 RepID=Q1YTR0_9GAMM Length = 73 Score = 45.7 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 8/63 (12%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRML--GVKSVGWIEAEIDEWLSQ 65 R+LR V + +R+ +YD +N FP+ + + G ++VGW ++I++++ Sbjct: 9 RLLRWKEVAKIIPFSRSYVYDLIN------QGKFPRGQKMVRGGQAVGWWASDINDYMLA 62 Query: 66 RCK 68 + Sbjct: 63 LME 65 >UniRef50_C6E2B8 Phage transcriptional regulator, AlpA n=1 Tax=Geobacter sp. M21 RepID=C6E2B8_GEOSM Length = 57 Score = 45.7 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 6/55 (10%) Query: 11 RLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 R+ V + +++ TI W+ + FPK L + W E+ ++ Q Sbjct: 6 RMKQVQEHVPVSKTTILTWVR------EGKFPKPIKLSGRCTVWDLEEVINFIEQ 54 >UniRef50_UPI0001AF1863 hypothetical protein SghaA1_28044 n=1 Tax=Streptomyces ghanaensis ATCC 14672 RepID=UPI0001AF1863 Length = 301 Score = 45.7 bits (107), Expect = 5e-04, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 7/67 (10%) Query: 5 SAVRILRLP-------AVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEA 57 +R+LR+ + ++TG R + W+N + FP + +S W Sbjct: 68 PGLRLLRIDPDLVGVSDIAERTGRTRQNVQQWVNGERRAGKERFPAPEGVAGRSPVWRWG 127 Query: 58 EIDEWLS 64 +++ WL+ Sbjct: 128 DVNAWLA 134 >UniRef50_B2U4Z1 Prophage CP4-57 regulatory protein (AlpA) n=2 Tax=Enterobacteriaceae RepID=B2U4Z1_SHIB3 Length = 85 Score = 45.7 bits (107), Expect = 5e-04, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 6/56 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 R +R I T +A +T + FP++ +G ++ G+ +E+ W+ Sbjct: 20 RFIREKECIALTTLANSTRWKM------EQAGKFPRRIKIGERAAGYRLSEVQAWI 69 >UniRef50_D2U094 Phage transcriptional regulator n=1 Tax=Arsenophonus nasoniae RepID=D2U094_9ENTR Length = 42 Score = 45.3 bits (106), Expect = 6e-04, Method: Composition-based stats. Identities = 8/30 (26%), Positives = 22/30 (73%) Query: 38 DATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 + FP++ +G +S+ ++E+E+D+W++ + Sbjct: 3 NGEFPQQVKIGTRSIAFVESEVDKWVADKI 32 >UniRef50_B9MGX1 Phage transcriptional regulator, AlpA n=1 Tax=Diaphorobacter sp. TPSY RepID=B9MGX1_DIAST Length = 72 Score = 44.9 bits (105), Expect = 8e-04, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 6/65 (9%) Query: 1 MNNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEID 60 M + ++RLPAV+Q ++R+ Y+ + +P LG ++V W ++I+ Sbjct: 2 MTTTTTDVLMRLPAVLQVFPVSRSGWYEGVRT------GRYPAPVKLGARAVAWRRSDIE 55 Query: 61 EWLSQ 65 ++ Sbjct: 56 RLVAN 60 >UniRef50_B0QSY9 Putative uncharacterized protein n=1 Tax=Haemophilus parasuis 29755 RepID=B0QSY9_HAEPR Length = 76 Score = 44.9 bits (105), Expect = 8e-04, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%) Query: 14 AVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 V+ K R + +N DA+FPK L + W AEID W+S + Sbjct: 24 DVMTKICCKRTKLSSLMNE-----DASFPKPIRLSKNHIRWNLAEIDAWISAQ 71 >UniRef50_A7FCS5 AlpA family protein n=8 Tax=Enterobacteriaceae RepID=A7FCS5_YERP3 Length = 72 Score = 44.9 bits (105), Expect = 9e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 6/57 (10%) Query: 10 LRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 +R + + G++ +TI + D + P+ LG K + EI+ WL+ + Sbjct: 17 IRRFRLAEMLGVSVSTIDRKVK------DGSLPRPIKLGEKITAFSAVEINSWLAAQ 67 >UniRef50_Q0HSR4 Phage transcriptional regulator, AlpA n=1 Tax=Shewanella sp. MR-7 RepID=Q0HSR4_SHESR Length = 87 Score = 44.5 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 6/53 (11%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEID 60 RI+R G++ +T+++ +N P L ++VGW E EI Sbjct: 6 RIVRKHEAKTMLGISHSTLHERINA------GLIPPPFRLSGRAVGWYEYEIQ 52 >UniRef50_A9C2W4 Phage transcriptional regulator, AlpA n=1 Tax=Delftia acidovorans SPH-1 RepID=A9C2W4_DELAS Length = 124 Score = 44.1 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 6/57 (10%) Query: 10 LRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 + L + ++ + I + FP+ R L + VG+I AE++ W+ R Sbjct: 47 ISLQEAARAVDLSESQIQKLVQT------GDFPRPRQLSARRVGFIVAEVEAWVMSR 97 >UniRef50_B4SNK5 Phage transcriptional regulator, AlpA n=1 Tax=Stenotrophomonas maltophilia R551-3 RepID=B4SNK5_STRM5 Length = 71 Score = 43.7 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 7/59 (11%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 +L L V Q TGM IY + FP+ +G +++ WI++E+ W+ Q+ Sbjct: 10 LLSLDRVRQMTGMGTTFIYGEIKV------GRFPRSIRIGRRAL-WIQSEVQGWVRQQI 61 >UniRef50_B3IEH8 Transcriptional regulator, AlpA family n=2 Tax=Escherichia coli RepID=B3IEH8_ECOLX Length = 127 Score = 43.7 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 29/62 (46%), Gaps = 6/62 (9%) Query: 4 RSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 R + R++ + V++ T ++R T+ + FP++ + W +E+ +W+ Sbjct: 32 RLSERLVDMNQVMELTTLSRRTLLNL------EARGEFPERVQVTEGRKAWYLSEVIDWI 85 Query: 64 SQ 65 + Sbjct: 86 NN 87 >UniRef50_B9MIK9 Phage transcriptional regulator, AlpA n=1 Tax=Diaphorobacter sp. TPSY RepID=B9MIK9_DIAST Length = 106 Score = 43.7 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 5/58 (8%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 + L+LP V+Q+ ++R+ + WL+ FP+ +G + + WI+ ++D W S Sbjct: 1 MNFLKLPEVLQRGKVSRSALLRWLDQPEIG----FPQPVKIG-RGIFWIDTQVDAWFS 53 >UniRef50_Q89JN8 Blr5245 protein n=1 Tax=Bradyrhizobium japonicum RepID=Q89JN8_BRAJA Length = 118 Score = 43.7 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 6/57 (10%) Query: 6 AVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEW 62 R+L V++ + R T+Y FPK + W E EI W Sbjct: 42 PRRMLNEKQVLEIIPVGRTTLYRMEKS------GRFPKSTYISPNRRVWFEDEIIAW 92 >UniRef50_B7UGV1 Predicted protein n=2 Tax=Escherichia RepID=B7UGV1_ECO27 Length = 199 Score = 43.3 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 6/57 (10%) Query: 12 LPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRCK 68 + V ++++T+ W + FPK +G + V + AEI W ++ K Sbjct: 147 VQKVADFLAVSKSTLQRW------KMRPDFPKPVKMGERRVMFDAAEILAWSKKQAK 197 >UniRef50_D0SV87 Predicted protein n=1 Tax=Acinetobacter lwoffii SH145 RepID=D0SV87_ACILW Length = 95 Score = 43.3 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 6/66 (9%) Query: 1 MNNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEID 60 +N A I PA + G++ TI+ W+ + FP L W ++I Sbjct: 32 INKGRAKNINARPASLGLIGVSDKTIWQWVR------EGKFPSPVKLSKCVTVWRMSDIQ 85 Query: 61 EWLSQR 66 W+ + Sbjct: 86 VWMESK 91 >UniRef50_D2QCK8 Phage transcriptional regulator, AlpA n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QCK8_9SPHI Length = 72 Score = 43.3 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 24/57 (42%), Gaps = 6/57 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 +RL +++ ++R+T + FP+ L + W ++I + ++ Sbjct: 14 FIRLNQILKIIPVSRSTWWHGCKT------GRFPQPYKLSPRVTAWKASDIQDCMAN 64 >UniRef50_B2RED9 Putative bacteriophage DNA-binding transcription regulator n=1 Tax=Sinorhizobium meliloti RepID=B2RED9_RHIME Length = 58 Score = 43.3 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 6/58 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 ++ + V + T ++R T++ FPK L V + EI++W++ R Sbjct: 4 LMTIQQVCKATSLSRTTLWRLQQ------RGDFPKGMRLSSSRVAYAIPEIEKWIASR 55 >UniRef50_A1W680 Phage transcriptional regulator, AlpA n=2 Tax=Acidovorax RepID=A1W680_ACISJ Length = 79 Score = 43.3 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 8/58 (13%), Positives = 24/58 (41%), Gaps = 6/58 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 +R ++ +++T++ + + FP L V W ++ W++++ Sbjct: 27 FVRQKLLLSFVPFSKSTLWRRVK------EGLFPAPIRLSVGITAWRAEDVRRWIAEQ 78 >UniRef50_B8J053 Phage transcriptional regulator, AlpA n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8J053_DESDA Length = 78 Score = 43.3 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 6/53 (11%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDE 61 +R V+Q + R T++ + FPK R LG K+ W AE+ Sbjct: 18 FVRTKQVLQMFPIGRTTLWRKIRA------GKFPKPRKLGPKTSVWDVAELRA 64 >UniRef50_Q0AAZ5 Phage transcriptional regulator, AlpA n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0AAZ5_ALHEH Length = 66 Score = 43.3 bits (101), Expect = 0.003, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 26/65 (40%), Gaps = 6/65 (9%) Query: 3 NRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEW 62 L L + ++ + ++T + W+ FPK L W +++++W Sbjct: 4 TAQQTTYLSLRQITERYNVHKSTAWRWVAA------GRFPKPVKLSPGCTRWKLSDLEQW 57 Query: 63 LSQRC 67 +++ Sbjct: 58 EAEQA 62 >UniRef50_C6E131 Phage transcriptional regulator, AlpA n=1 Tax=Geobacter sp. M21 RepID=C6E131_GEOSM Length = 64 Score = 43.3 bits (101), Expect = 0.003, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 6/60 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRCK 68 I+R + Q TG++R TI+ K F ++ L S+G+ +I+ WL R + Sbjct: 11 IIRPRDLPQLTGLSRTTIWRLEKAK------EFVQRIRLTRHSIGYRRVDIERWLEARAE 64 >UniRef50_C0VMY7 Putative uncharacterized protein n=1 Tax=Acinetobacter sp. ATCC 27244 RepID=C0VMY7_9GAMM Length = 95 Score = 43.0 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 7/62 (11%) Query: 6 AVRILR-LPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 RI++ P M TI+D + FP L + W +I+ W++ Sbjct: 36 TTRIIKARPERQGLLPMGETTIWDKVRA------GEFPTPIKLTERITAWRIEDIEAWMA 89 Query: 65 QR 66 + Sbjct: 90 SK 91 >UniRef50_Q8EJS6 DNA-binding protein, putative n=2 Tax=Shewanella RepID=Q8EJS6_SHEON Length = 82 Score = 43.0 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 6/62 (9%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 RI+R T ++R+ + FPK+ LG +SVGW +E+ +W+ Sbjct: 14 RIVRETERKLITSISRSQAFQLERLN------RFPKRIKLGNRSVGWRLSELMQWVHSGG 67 Query: 68 KL 69 +L Sbjct: 68 EL 69 >UniRef50_C7BGF0 Transcriptional regulator gp34 n=1 Tax=Burkholderia phage KS9 RepID=C7BGF0_9CAUD Length = 91 Score = 43.0 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 6/56 (10%) Query: 10 LRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 L LPAV ++ ATI + + FPK R+L + V W+ EI+ W Sbjct: 6 LDLPAVATAVSLSEATIQKLVR------EHKFPKPRVLSDRRVAWLTREIETWAEA 55 >UniRef50_Q5P091 Putative uncharacterized protein n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5P091_AZOSE Length = 69 Score = 43.0 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 5/58 (8%) Query: 12 LPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRCKL 69 + V + T++ W+ R D TFP++ L W + W++ R ++ Sbjct: 15 VKDVAAILTIHEKTVWRWM-----REDDTFPRQIRLSSACSRWDLNAVRAWIAGRVEV 67 >UniRef50_A3W5U3 Putative uncharacterized protein n=1 Tax=Roseovarius sp. 217 RepID=A3W5U3_9RHOB Length = 69 Score = 42.6 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 26/53 (49%), Gaps = 6/53 (11%) Query: 10 LRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEW 62 + + V ++ +++ TI+ W + + FP LG + W ++I+E+ Sbjct: 1 MSVEQVAKRFSVSKDTIWRW------KRNGEFPAPVKLGGTTTRWRLSDIEEY 47 >UniRef50_B3GXK5 Putative uncharacterized protein n=2 Tax=Pasteurellaceae RepID=B3GXK5_ACTP7 Length = 67 Score = 42.6 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 7/65 (10%), Positives = 21/65 (32%), Gaps = 6/65 (9%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 + +++ G R + + FP+ + W E++ W+ Sbjct: 7 QSKKLISGKETCAVVGCGRTKLNLLVKA------GKFPQPIRFSQNFIRWDLEEVEAWIE 60 Query: 65 QRCKL 69 ++ + Sbjct: 61 EQKAM 65 >UniRef50_B1JMJ2 Phage transcriptional regulator, AlpA n=5 Tax=Enterobacteriaceae RepID=B1JMJ2_YERPY Length = 93 Score = 42.2 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 6/56 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 R++R + T ++R+T + N + FP ++ LG S W+ +++ W+ Sbjct: 26 RLVREKERQRITSISRSTAWLLEN------EGRFPARKPLGRNSCAWLLSDLLCWV 75 >UniRef50_Q2CB88 Putative uncharacterized protein n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CB88_9RHOB Length = 74 Score = 42.2 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 19/30 (63%) Query: 38 DATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 FP++ L SV W+ +E+++WL++R Sbjct: 34 RGRFPRRVRLAGTSVAWLSSELEDWLAERA 63 >UniRef50_B1JQY2 Phage transcriptional regulator, AlpA n=1 Tax=Yersinia pseudotuberculosis YPIII RepID=B1JQY2_YERPY Length = 111 Score = 42.2 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 6/58 (10%) Query: 11 RLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRCK 68 R+ + G++ T++ W+ D F K L + AE+ W++ + + Sbjct: 58 RVTKTAKFLGVSYPTLWRWMR------DGDFVKPIELSEGVKVFDAAEVRAWVNSKKE 109 >UniRef50_A3NTN9 Prophage CP4-57 regulatory protein (AlpA) n=4 Tax=Burkholderia pseudomallei RepID=A3NTN9_BURP0 Length = 69 Score = 41.8 bits (97), Expect = 0.006, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 25/59 (42%), Gaps = 5/59 (8%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 ++R + G+ +T++ + FPK + + ++ E+D W++ R Sbjct: 9 VVRPAKAAELLGIGVSTLWRYTKTVE-----DFPKPVRINSRVSVFVREELDNWVTNRI 62 >UniRef50_Q2SXA4 Prophage CP4-57 regulatory protein (AlpA) family n=1 Tax=Burkholderia thailandensis E264 RepID=Q2SXA4_BURTA Length = 80 Score = 41.8 bits (97), Expect = 0.007, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 6/58 (10%) Query: 10 LRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 L + +V ++ A I+ + + FP+ R L + VGW+ E++EW R Sbjct: 6 LDIASVSAAVSLSPAVIHKLVRQE------EFPRPRALSGRRVGWLTREVEEWAEART 57 >UniRef50_C4UMX3 Prophage CP4-57 regulatory protein AlpA n=3 Tax=Enterobacteriaceae RepID=C4UMX3_YERRU Length = 54 Score = 41.8 bits (97), Expect = 0.007, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 7/50 (14%) Query: 18 KTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 T + Y + D +FPK +G +S W+++E++ WL++R Sbjct: 7 FTQLTDKWFYKLIK------DGSFPKPIKMG-RSSRWLKSEVESWLNERI 49 >UniRef50_A9F5F5 Putative uncharacterized protein n=1 Tax=Phaeobacter gallaeciensis 2.10 RepID=A9F5F5_9RHOB Length = 70 Score = 41.8 bits (97), Expect = 0.007, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 7/63 (11%) Query: 6 AVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 + + L V+Q+ + ++++Y +N D T PK LG S +I +EI L + Sbjct: 2 SEKYLTPDEVMQRLNLTKSSLYRRVN------DGTLPKPIKLGHLS-RFIASEIQIALEE 54 Query: 66 RCK 68 + Sbjct: 55 LAQ 57 >UniRef50_A1SV80 Phage transcriptional regulator, AlpA n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SV80_PSYIN Length = 57 Score = 41.4 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 31/62 (50%), Gaps = 6/62 (9%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 +++L V + G +R T++ W FP+ + +++GW E + +WL+++ Sbjct: 1 MKLLTTDEVTKIVGRSRGTLFRWWKK------GIFPEPLLYNGRTLGWNEEAVQQWLNKK 54 Query: 67 CK 68 + Sbjct: 55 EQ 56 >UniRef50_B1EIE3 Conserved domain protein n=1 Tax=Escherichia albertii TW07627 RepID=B1EIE3_9ESCH Length = 68 Score = 41.4 bits (96), Expect = 0.010, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 6/66 (9%) Query: 1 MNNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEID 60 M+ +R VI ++ +T+++W+ FP LG + + I Sbjct: 1 MDTLPKSGYMRPAQVINHFQISESTLWNWVKK------GKFPSPDKLGDGVSRFDVSAIR 54 Query: 61 EWLSQR 66 +WL+ R Sbjct: 55 QWLADR 60 >UniRef50_A5ZFJ6 Putative uncharacterized protein n=1 Tax=Bacteroides caccae ATCC 43185 RepID=A5ZFJ6_9BACE Length = 120 Score = 41.4 bits (96), Expect = 0.010, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 5/65 (7%) Query: 1 MNNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEID 60 ++ +L + V + TG RATIY + F K G + + + EI+ Sbjct: 35 LSKNVQTEMLTIQEVSELTGYKRATIYKLTCERKIP----FHKPAH-GGRRIFFKREEIN 89 Query: 61 EWLSQ 65 +WL Sbjct: 90 KWLES 94 >UniRef50_B8DSS4 Putative uncharacterized protein n=4 Tax=Bifidobacterium animalis subsp. lactis RepID=B8DSS4_BIFA0 Length = 68 Score = 41.0 bits (95), Expect = 0.011, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 5/62 (8%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 + +L + V ++ GM+ TIY K + P +G + + W ++D+W+ Sbjct: 9 TTRELLDIKQVAERIGMSATTIYH----KRRTHKDEVPPAIRIG-RKLFWRPKDVDQWID 63 Query: 65 QR 66 R Sbjct: 64 NR 65 >UniRef50_A4XY14 Phage transcriptional regulator, AlpA n=10 Tax=Proteobacteria RepID=A4XY14_PSEMY Length = 174 Score = 41.0 bits (95), Expect = 0.011, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 5/58 (8%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 ++ L V + G++R + Y +FP G S+ W A++ WL + Sbjct: 81 LVGLTDVAEIVGVSRQN----MRKLMLAYPGSFPTPVHEGSASI-WHLADVLAWLQAK 133 >UniRef50_Q7NRD0 Putative uncharacterized protein n=1 Tax=Chromobacterium violaceum RepID=Q7NRD0_CHRVO Length = 76 Score = 41.0 bits (95), Expect = 0.012, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 6/46 (13%) Query: 21 MARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 + +T++ + TFP L + W +I EWL + Sbjct: 33 FSVSTLWRRVRA------GTFPAPIKLSDRVTAWKAEDIREWLDSQ 72 >UniRef50_A1RET4 Phage transcriptional regulator, AlpA n=2 Tax=Shewanella RepID=A1RET4_SHESW Length = 71 Score = 41.0 bits (95), Expect = 0.012, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 8/67 (11%) Query: 2 NNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKS--VGWIEAEI 59 N+ S+ R++R T ++R T + FPK+R L +S V W+ +E+ Sbjct: 7 NHESSDRLVREAERKSITSISRTTAWQL------ERKGLFPKRRQLYPQSNHVCWLLSEL 60 Query: 60 DEWLSQR 66 + W+S R Sbjct: 61 NAWVSNR 67 >UniRef50_Q0C6J1 Putative uncharacterized protein n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q0C6J1_PELCD Length = 71 Score = 40.6 bits (94), Expect = 0.014, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 16/65 (24%) Query: 7 VRILRLPAVIQ----------KTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIE 56 ++LR+ +I + RAT+Y ++ D T+PK LG ++V + E Sbjct: 2 YKLLRIKQIIGDPKATPPIEPIIPVCRATVYRRIS------DGTWPKPVRLGPRTVAFRE 55 Query: 57 AEIDE 61 +I Sbjct: 56 QDIRA 60 >UniRef50_Q0K8U8 Putative uncharacterized protein h16_A2485 n=1 Tax=Ralstonia eutropha H16 RepID=Q0K8U8_RALEH Length = 130 Score = 40.6 bits (94), Expect = 0.016, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 4/57 (7%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 +L + + G +R IY L R + +FP+ + + + W ++ +W+ Sbjct: 23 LLSPEELAELLGKSRNAIYHMLR----RDEDSFPQPVLRQNRCIRWRAGDVRDWIDS 75 >UniRef50_C6CP56 Phage transcriptional regulator, AlpA n=4 Tax=Enterobacteriaceae RepID=C6CP56_DICZE Length = 73 Score = 40.6 bits (94), Expect = 0.016, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 9/60 (15%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 +R R+P ++ G++ TI W+ + T P+ L + EI+ WL++R Sbjct: 17 IRRFRMPELL---GVSMPTIDRWVK------NGTLPRPVKLTDNVTAFDAVEINRWLAER 67 >UniRef50_UPI0001BCF8F6 hypothetical protein COK_1269 n=1 Tax=Mannheimia haemolytica serotype A2 str. BOVINE RepID=UPI0001BCF8F6 Length = 66 Score = 40.3 bits (93), Expect = 0.017, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 9/68 (13%) Query: 1 MNNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEID 60 M L + G++R+ IY + FP G + W ++ Sbjct: 1 MQTNQTY--LNAQEIAAHLGISRSGIYSLMKSSH------FPSPVKFG-RLSRWKVDDLR 51 Query: 61 EWLSQRCK 68 +WL+ + + Sbjct: 52 QWLNNQEQ 59 >UniRef50_A8LEW6 Phage transcriptional regulator, AlpA n=1 Tax=Frankia sp. EAN1pec RepID=A8LEW6_FRASN Length = 119 Score = 40.3 bits (93), Expect = 0.018, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 8/66 (12%) Query: 1 MNNRSAVRILRL---PAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEA 57 + + R LRL + Q G+ A IY + D TFP+ W+ Sbjct: 43 LGWQPMTRDLRLMAAAEIAQALGLGSARIYQIMKA-----DPTFPEPIATLRVGKIWLAT 97 Query: 58 EIDEWL 63 +I+EW+ Sbjct: 98 DIEEWM 103 >UniRef50_C6XNR9 Phage transcriptional regulator, AlpA n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XNR9_HIRBI Length = 69 Score = 40.3 bits (93), Expect = 0.018, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 9/63 (14%) Query: 9 ILRLPAVIQKTG---MARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 +RL +I G ++++T + + D FPK R LG + W EI Sbjct: 12 FVRLKQIIAPYGPIPVSKSTWWAGVK------DGRFPKPRKLGSRVTVWKADEIRALYEA 65 Query: 66 RCK 68 + + Sbjct: 66 KNE 68 >UniRef50_B6BP04 Transcriptional regulator, AlpA family n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BP04_9PROT Length = 51 Score = 40.3 bits (93), Expect = 0.018, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 7/56 (12%) Query: 10 LRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 ++L VI K ++R+ +Y + FP + +G S W+E +I W+ Sbjct: 1 MKLQQVINKVAISRSELYKLIALNK------FPPQIKIGKMS-RWLEKDIINWIQS 49 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P33997 Prophage CP4-57 regulatory protein alpA n=5 Tax=... 88 1e-16 UniRef50_Q1RDI7 Possible prophage regulatory protein n=15 Tax=En... 82 5e-15 UniRef50_Q0HJK3 Phage transcriptional regulator, AlpA n=2 Tax=Sh... 81 8e-15 UniRef50_C4L905 Phage transcriptional regulator, AlpA n=1 Tax=To... 81 1e-14 UniRef50_D0T2W6 Predicted protein n=2 Tax=Acinetobacter radiores... 80 2e-14 UniRef50_D1P3D5 Conserved domain protein n=1 Tax=Providencia rus... 80 2e-14 UniRef50_Q7P0B9 Probable prophage regulatory protein n=7 Tax=Pro... 80 2e-14 UniRef50_Q3SF41 Possible Transcriptional Regulator n=2 Tax=Thiob... 79 4e-14 UniRef50_B7SYF9 Gp29 n=2 Tax=root RepID=B7SYF9_9CAUD 79 4e-14 UniRef50_Q8Z105 Phage DNA binding protein n=5 Tax=Enterobacteria... 79 5e-14 UniRef50_Q4FTD7 Possible prophage regulatory protein AlpA n=5 Ta... 79 5e-14 UniRef50_P12552 Uncharacterized protein ORF88 n=40 Tax=root RepI... 79 5e-14 UniRef50_B2K8D1 Phage transcriptional regulator, AlpA n=2 Tax=Ye... 79 6e-14 UniRef50_Q7MJB2 Predicted transcriptional regulator n=47 Tax=Vib... 78 1e-13 UniRef50_A1WW70 Phage transcriptional regulator, AlpA n=2 Tax=Ga... 76 3e-13 UniRef50_B4S218 Phage transcriptional regulator, AlpA n=2 Tax=Ga... 76 3e-13 UniRef50_A4G2Z1 Prophage CP4-57 regulatory protein alpA n=2 Tax=... 76 4e-13 UniRef50_B9B2T4 Conserved domain protein n=1 Tax=Burkholderia mu... 76 4e-13 UniRef50_Q46Z77 Prophage CP4-57 regulatory n=2 Tax=Burkholderiac... 75 6e-13 UniRef50_A1TYD2 Phage transcriptional regulator, AlpA n=3 Tax=Pr... 75 7e-13 UniRef50_A0Q3W1 Regulatory protein, AlpA family n=6 Tax=Francise... 75 7e-13 UniRef50_B5SEZ3 Bacteriophage dna-binding protein n=4 Tax=Proteo... 75 8e-13 UniRef50_Q46YP9 Prophage CP4-57 regulatory n=1 Tax=Ralstonia eut... 74 1e-12 UniRef50_Q0HVT5 Phage transcriptional regulator, AlpA n=14 Tax=c... 74 1e-12 UniRef50_Q0HGG2 Phage transcriptional regulator, AlpA n=3 Tax=Ba... 74 1e-12 UniRef50_A4SQA2 Prophage regulatory protein n=1 Tax=Aeromonas sa... 74 1e-12 UniRef50_C6RQK1 Phage transcriptional regulator, AlpA n=3 Tax=Ac... 74 1e-12 UniRef50_D2TNW8 Putative uncharacterized protein n=1 Tax=Citroba... 74 2e-12 UniRef50_UPI0000E0FEEA phage transcriptional regulator, AlpA n=1... 74 2e-12 UniRef50_A5UG77 Predicted transcriptional regulator n=1 Tax=Haem... 74 2e-12 UniRef50_D0W4G8 Conserved domain protein n=1 Tax=Neisseria ciner... 73 2e-12 UniRef50_Q13HX3 Phage transcriptional regulator, AlpA n=5 Tax=Pr... 73 2e-12 UniRef50_A3Z0Z5 DNA-binding protein, putative n=2 Tax=Synechococ... 73 2e-12 UniRef50_C2LJX4 Possible phage transcriptional regulator n=1 Tax... 73 2e-12 UniRef50_B9THH9 Putative uncharacterized protein n=1 Tax=Ricinus... 73 3e-12 UniRef50_A5W5Z3 Phage transcriptional regulator, AlpA n=2 Tax=Ps... 73 3e-12 UniRef50_B0U0W1 Phage transcriptional regulator, AlpA n=3 Tax=Ga... 73 4e-12 UniRef50_B2JL38 Phage transcriptional regulator, AlpA n=2 Tax=Pr... 72 5e-12 UniRef50_Q1Q868 Phage transcriptional regulator, AlpA n=1 Tax=Ps... 72 6e-12 UniRef50_A1SRJ5 Phage transcriptional regulator, AlpA n=1 Tax=Ps... 71 8e-12 UniRef50_Q1RPF9 ECs3513 protein n=4 Tax=Escherichia RepID=Q1RPF9... 71 9e-12 UniRef50_Q5QX32 Prophage CP4-57 regulatory protein-like protein ... 71 9e-12 UniRef50_C6CIY7 Phage transcriptional regulator, AlpA n=3 Tax=Pr... 71 9e-12 UniRef50_A4CWC5 Predicted transcriptional regulator n=1 Tax=Syne... 71 1e-11 UniRef50_D0M6T1 Phage transcriptional regulator AlpA n=1 Tax=Vib... 71 1e-11 UniRef50_A4TK05 Transcriptional regulator n=21 Tax=Enterobacteri... 71 2e-11 UniRef50_A1SV81 Phage transcriptional regulator, AlpA n=4 Tax=Ga... 71 2e-11 UniRef50_A0K329 Phage transcriptional regulator, AlpA n=1 Tax=Bu... 70 2e-11 UniRef50_C2LH22 Putative uncharacterized protein n=1 Tax=Proteus... 70 2e-11 UniRef50_Q2NDG2 Putative uncharacterized protein n=1 Tax=Erythro... 70 2e-11 UniRef50_C6AQQ2 Transcriptional regulator, AlpA family n=6 Tax=P... 69 3e-11 UniRef50_A4SPW1 Probable prophage regulatory protein n=1 Tax=Aer... 69 3e-11 UniRef50_B8L4N0 Putative transcriptional regulator n=1 Tax=Steno... 69 3e-11 UniRef50_Q47ZW9 Putative uncharacterized protein n=1 Tax=Colwell... 69 3e-11 UniRef50_C6DCW7 Phage transcriptional regulator, AlpA n=3 Tax=Pe... 69 4e-11 UniRef50_C1DSG0 Prophage CP4-57 regulatory, AlpA-like protein n=... 69 4e-11 UniRef50_A3VKJ6 DNA-binding protein, putative n=2 Tax=Proteobact... 69 4e-11 UniRef50_Q2NBH3 Predicted transcriptional regulator n=4 Tax=Sphi... 69 4e-11 UniRef50_Q0I4F9 Phage transcriptional regulator, AlpA n=2 Tax=Ba... 69 5e-11 UniRef50_UPI0001AF502E phage transcriptional regulator, AlpA n=1... 68 6e-11 UniRef50_B2JC70 Phage transcriptional regulator, AlpA n=2 Tax=Bu... 68 7e-11 UniRef50_D2NKU9 Putative transcriptional regulator n=1 Tax=Esche... 68 7e-11 UniRef50_A9FCF4 DNA-binding protein, putative n=6 Tax=Rhodobacte... 68 8e-11 UniRef50_A4JAZ2 Phage transcriptional regulator, AlpA n=1 Tax=Bu... 68 9e-11 UniRef50_A3P008 Prophage CP4-57 regulatory protein (AlpA) n=4 Ta... 68 9e-11 UniRef50_D2NHT3 Hypothetical phage protein n=1 Tax=Escherichia c... 68 1e-10 UniRef50_Q2YAI6 Phage transcriptional regulator, AlpA n=1 Tax=Ni... 68 1e-10 UniRef50_A1TJN4 Phage transcriptional regulator, AlpA n=28 Tax=P... 68 1e-10 UniRef50_A3NM12 Prophage CP4-57 regulatory protein (AlpA) n=10 T... 68 1e-10 UniRef50_C6S833 Putative prophage regulatory protein n=4 Tax=Nei... 67 1e-10 UniRef50_B4RZR3 Phage transcriptional regulator, AlpA n=1 Tax=Al... 67 2e-10 UniRef50_B0TKK3 Phage transcriptional regulator, AlpA n=1 Tax=Sh... 67 2e-10 UniRef50_B6AMX6 Phage DNA binding protein n=2 Tax=Bacteria RepID... 67 2e-10 UniRef50_C8R2I6 Phage transcriptional regulator, AlpA n=1 Tax=De... 67 2e-10 UniRef50_A9IRW1 Strain DSM 12804, complete genome n=1 Tax=Bordet... 67 2e-10 UniRef50_B0RRY0 Putative uncharacterized protein n=2 Tax=Xanthom... 67 2e-10 UniRef50_B1SZZ6 Phage transcriptional regulator, AlpA n=1 Tax=Bu... 67 2e-10 UniRef50_A1U0S6 Phage transcriptional regulator, AlpA n=2 Tax=Ga... 66 2e-10 UniRef50_A7JWM9 Possible bacteriophage transcriptional regulator... 66 2e-10 UniRef50_B3Q046 Putative uncharacterized protein n=1 Tax=Rhizobi... 66 3e-10 UniRef50_C4GIW5 Putative uncharacterized protein n=1 Tax=Kingell... 66 3e-10 UniRef50_C4L9N9 Phage transcriptional regulator, AlpA n=11 Tax=P... 66 3e-10 UniRef50_A8AM43 Putative uncharacterized protein n=4 Tax=Enterob... 66 3e-10 UniRef50_D0BWH4 Phage protein (Fragment) n=1 Tax=Acinetobacter s... 66 4e-10 UniRef50_B7VPA4 Predicted transcriptional regulator n=31 Tax=Gam... 66 4e-10 UniRef50_D0KY14 Phage transcriptional regulator, AlpA n=1 Tax=Ha... 66 4e-10 UniRef50_B0KMB7 Phage transcriptional regulator, AlpA n=1 Tax=Ps... 66 4e-10 UniRef50_B5EWU9 Conserved domain protein n=61 Tax=Enterobacteria... 66 4e-10 UniRef50_D1UHG7 Phage transcriptional regulator, AlpA n=1 Tax=Bu... 66 5e-10 UniRef50_C9PEM5 Putative uncharacterized protein n=1 Tax=Vibrio ... 65 6e-10 UniRef50_UPI00016ADB9E regulatory protein, AlpA family n=3 Tax=p... 65 6e-10 UniRef50_D1TJS7 Putative uncharacterized protein n=1 Tax=Burkhol... 65 7e-10 UniRef50_A9D684 Phage transcriptional regulator, AlpA n=2 Tax=Al... 65 8e-10 UniRef50_C5CXN0 Phage transcriptional regulator, AlpA n=2 Tax=Va... 65 8e-10 UniRef50_Q2SPA0 Predicted transcriptional regulator n=1 Tax=Hahe... 64 9e-10 UniRef50_A4TNW0 Transcriptional regulator n=18 Tax=Enterobacteri... 64 1e-09 UniRef50_C6MJ06 Phage transcriptional regulator, AlpA n=1 Tax=Ni... 64 2e-09 UniRef50_Q28S53 Phage transcriptional regulator, AlpA n=23 Tax=A... 64 2e-09 UniRef50_A4JR07 Phage transcriptional regulator, AlpA n=6 Tax=Bu... 64 2e-09 UniRef50_A3UV40 Transcriptional regulator, putative n=2 Tax=Prot... 64 2e-09 UniRef50_Q0A9S3 Phage transcriptional regulator, AlpA n=1 Tax=Al... 64 2e-09 UniRef50_A9IES4 Predicted transcriptional regulator n=1 Tax=Bord... 64 2e-09 UniRef50_C8QZM7 Phage transcriptional regulator, AlpA n=1 Tax=De... 64 2e-09 UniRef50_A2PQ69 Prophage CP4-57 regulatory protein (AlpA) n=1 Ta... 64 2e-09 UniRef50_D0M3I3 Predicted transcriptional regulator n=1 Tax=Vibr... 63 2e-09 UniRef50_D0J4D1 Phage transcriptional regulator, AlpA n=1 Tax=Co... 63 2e-09 UniRef50_A3JW32 Prophage CP4-57 regulatory n=1 Tax=Rhodobacteral... 63 2e-09 UniRef50_UPI0001BCF977 putative prophage CP4-57 regulatory prote... 63 2e-09 UniRef50_D1NFX2 Prophage CP4-57 regulatory protein n=1 Tax=Haemo... 63 3e-09 UniRef50_C0GR58 Phage transcriptional regulator, AlpA n=1 Tax=De... 63 3e-09 UniRef50_B1JDS6 Phage transcriptional regulator, AlpA n=2 Tax=Ps... 63 3e-09 UniRef50_Q2Y6Z7 Phage transcriptional regulator, AlpA n=6 Tax=Pr... 63 3e-09 UniRef50_C0DTI2 Putative uncharacterized protein n=1 Tax=Eikenel... 63 4e-09 UniRef50_Q6AR72 Putative uncharacterized protein n=1 Tax=Desulfo... 63 4e-09 UniRef50_B1LN65 Transcriptional regulator, AlpA family n=8 Tax=E... 63 4e-09 UniRef50_A1Z2Q5 Putative uncharacterized protein n=10 Tax=Entero... 63 4e-09 UniRef50_C6TZS2 Prophage CP4-57 regulatory protein (AlpA) n=1 Ta... 62 5e-09 UniRef50_Q2T3P9 Prophage regulatory protein AlpA family protein ... 62 5e-09 UniRef50_Q21UK9 Phage transcriptional regulator, AlpA n=2 Tax=Pr... 62 5e-09 UniRef50_A6Q4M7 Transcriptional regulator n=1 Tax=Nitratiruptor ... 62 6e-09 UniRef50_B6R1G6 Putative regulatory protein encoded in prophage ... 62 7e-09 UniRef50_C1DSG1 Prophage CP4-57 regulatory , AlpA-like protein n... 62 7e-09 UniRef50_C4KAH0 Phage transcriptional regulator, AlpA n=1 Tax=Th... 61 8e-09 UniRef50_D0Z915 Putative uncharacterized protein n=1 Tax=Edwards... 61 1e-08 UniRef50_D0J4J3 Phage transcriptional regulator, AlpA n=1 Tax=Co... 61 1e-08 UniRef50_B1Y1X4 Phage transcriptional regulator, AlpA n=1 Tax=Le... 61 1e-08 UniRef50_A7MSH2 Putative uncharacterized protein n=1 Tax=Vibrio ... 61 1e-08 UniRef50_A0Q4W2 Regulatory protein, AlpA family n=3 Tax=Francise... 61 1e-08 UniRef50_A1TSI2 Phage transcriptional regulator, AlpA n=1 Tax=Ac... 61 1e-08 UniRef50_D2LHF0 Phage transcriptional regulator, AlpA n=1 Tax=Rh... 61 1e-08 UniRef50_D2MIG9 Prophage CP4-57 regulatory n=2 Tax=Candidatus Po... 61 2e-08 UniRef50_A6B241 Conserved domain protein n=2 Tax=Vibrio parahaem... 61 2e-08 UniRef50_B5J7B4 Transcriptional regulator, AlpA family n=1 Tax=O... 61 2e-08 UniRef50_Q75SW7 Putative uncharacterized protein n=1 Tax=Escheri... 61 2e-08 UniRef50_D0M1L9 Predicted transcriptional regulator n=1 Tax=Vibr... 60 2e-08 UniRef50_Q1LNC5 Phage transcriptional regulator, AlpA n=14 Tax=P... 60 2e-08 UniRef50_Q13ZB8 Phage transcriptional regulator, AlpA n=1 Tax=Bu... 60 2e-08 UniRef50_Q1QLR6 Phage transcriptional regulator, AlpA n=1 Tax=Ni... 60 3e-08 UniRef50_B2PZ48 Putative uncharacterized protein n=2 Tax=Enterob... 60 3e-08 UniRef50_C6DZ79 Phage transcriptional regulator, AlpA n=1 Tax=Ge... 60 3e-08 UniRef50_UPI00019078FB hypothetical protein RetlG_16275 n=1 Tax=... 59 3e-08 UniRef50_C5CKX5 Phage transcriptional regulator, AlpA n=1 Tax=Va... 59 3e-08 UniRef50_Q1NGR7 Putative uncharacterized protein n=1 Tax=Sphingo... 59 4e-08 UniRef50_C8X398 Phage transcriptional regulator, AlpA n=1 Tax=De... 59 4e-08 UniRef50_B0RUQ9 Hypothetical 9.7 kDa protein n=1 Tax=Xanthomonas... 59 5e-08 UniRef50_Q3SQP6 Prophage CP4-57 regulatory n=4 Tax=Alphaproteoba... 59 5e-08 UniRef50_B5F477 Conserved domain protein n=2 Tax=Salmonella ente... 59 5e-08 UniRef50_A4XZH5 Phage transcriptional regulator, AlpA n=3 Tax=Ps... 59 6e-08 UniRef50_A1W718 Phage transcriptional regulator, AlpA n=1 Tax=Ac... 58 7e-08 UniRef50_Q47DU8 Prophage CP4-57 regulatory n=2 Tax=Dechloromonas... 58 8e-08 UniRef50_A7HPY0 Phage transcriptional regulator, AlpA n=2 Tax=Al... 58 8e-08 UniRef50_Q8DF51 Predicted phage-specific transcriptional regulat... 58 9e-08 UniRef50_A1W8X8 Phage transcriptional regulator, AlpA n=26 Tax=P... 58 1e-07 UniRef50_A1VSK2 Phage transcriptional regulator, AlpA n=1 Tax=Po... 58 1e-07 UniRef50_B0UVF0 Phage transcriptional regulator, AlpA n=4 Tax=Pa... 58 1e-07 UniRef50_Q21H24 Phage transcriptional regulator, AlpA n=1 Tax=Sa... 58 1e-07 UniRef50_B9MGX1 Phage transcriptional regulator, AlpA n=1 Tax=Di... 57 1e-07 UniRef50_B8K6F3 Transcriptional regulator, AlpA family n=2 Tax=G... 57 1e-07 UniRef50_Q1YTR0 Putative uncharacterized protein n=2 Tax=gamma p... 57 2e-07 UniRef50_D0W4G6 Conserved domain protein n=1 Tax=Neisseria ciner... 57 2e-07 UniRef50_B2JD58 Phage transcriptional regulator, AlpA n=1 Tax=Bu... 57 2e-07 UniRef50_Q0TV65 Phage AlpA family protein n=1 Tax=Thiomicrospira... 57 2e-07 UniRef50_A6VCA3 Transcriptional regulator, AlpA family n=2 Tax=P... 57 2e-07 UniRef50_Q0F0R8 Putative uncharacterized protein n=1 Tax=Maripro... 57 2e-07 UniRef50_A7ZI04 Prophage CP4-57 regulatory protein n=1 Tax=Esche... 56 2e-07 UniRef50_B8L8F8 Transcriptional regulator, AlpA family n=1 Tax=S... 56 3e-07 UniRef50_C0VI45 Putative uncharacterized protein n=1 Tax=Acineto... 56 3e-07 UniRef50_D2UDR2 Putative regulatory protein, alpa family n=1 Tax... 56 3e-07 UniRef50_C5V761 Phage transcriptional regulator, AlpA n=1 Tax=Ga... 56 3e-07 UniRef50_C5BER2 Phage transcriptional regulator, AlpA n=1 Tax=Ed... 56 4e-07 UniRef50_B0KSV2 Phage transcriptional regulator, AlpA n=1 Tax=Ps... 56 4e-07 UniRef50_Q63RT8 Putative uncharacterized protein n=1 Tax=Burkhol... 56 4e-07 UniRef50_A7FES1 AlpA family protein n=29 Tax=Enterobacteriaceae ... 56 5e-07 UniRef50_Q7U5P1 Possible transcription regulator n=2 Tax=Synecho... 56 5e-07 UniRef50_B5N8F3 Conserved domain protein n=1 Tax=Salmonella ente... 55 6e-07 UniRef50_B2JS19 Phage transcriptional regulator, AlpA n=1 Tax=Bu... 55 7e-07 UniRef50_B8KK13 Transcriptional regulator, AlpA family n=3 Tax=G... 55 8e-07 UniRef50_C7I2T3 Phage transcriptional regulator, AlpA n=1 Tax=Th... 55 8e-07 UniRef50_A2CBA2 Predicted transcriptional regulator n=3 Tax=Proc... 55 8e-07 UniRef50_D2TST7 Puative transcriptional regulator n=77 Tax=Enter... 55 9e-07 UniRef50_D0FM12 Prophage CP4-57 regulatory protein n=2 Tax=Aggre... 54 9e-07 UniRef50_Q0HSR4 Phage transcriptional regulator, AlpA n=1 Tax=Sh... 54 1e-06 UniRef50_C6E2B8 Phage transcriptional regulator, AlpA n=1 Tax=Ge... 54 1e-06 UniRef50_A3WKQ1 DNA-binding protein, putative n=1 Tax=Idiomarina... 54 1e-06 UniRef50_Q74H30 Putative uncharacterized protein n=1 Tax=Geobact... 54 1e-06 UniRef50_B2U4Z1 Prophage CP4-57 regulatory protein (AlpA) n=2 Ta... 54 1e-06 UniRef50_C6XEE2 Phage transcriptional regulator, AlpA n=1 Tax=Me... 54 2e-06 UniRef50_A4SRW4 Putative uncharacterized protein n=1 Tax=Aeromon... 53 2e-06 UniRef50_B0T8K3 Phage transcriptional regulator, AlpA n=6 Tax=Al... 53 2e-06 UniRef50_Q98MP9 Mll0486 protein n=1 Tax=Mesorhizobium loti RepID... 53 2e-06 UniRef50_Q0C1G9 Prophage CP4-57 regulatory protein AlpA family p... 53 2e-06 UniRef50_Q89JN8 Blr5245 protein n=1 Tax=Bradyrhizobium japonicum... 53 3e-06 UniRef50_A1K761 Putative uncharacterized protein n=1 Tax=Azoarcu... 53 3e-06 UniRef50_A5F3R9 Phage transcriptional regulator, AlpA n=5 Tax=Vi... 53 3e-06 UniRef50_A6TCN1 Putative uncharacterized protein n=9 Tax=Enterob... 53 3e-06 UniRef50_B6XJ47 Putative uncharacterized protein n=1 Tax=Provide... 53 3e-06 UniRef50_UPI0001AF1863 hypothetical protein SghaA1_28044 n=1 Tax... 53 4e-06 UniRef50_B3E9V0 Phage transcriptional regulator, AlpA n=1 Tax=Ge... 52 5e-06 UniRef50_B4W815 Transcriptional regulator, AlpA family n=1 Tax=B... 52 5e-06 UniRef50_A7JWN4 Possible bacteriophage transcriptional regulator... 52 5e-06 UniRef50_UPI00016A8C0B phage transcriptional regulator, AlpA n=1... 52 5e-06 UniRef50_Q2NDL4 Putative uncharacterized protein n=1 Tax=Erythro... 51 9e-06 UniRef50_B6JEJ7 Conserved domain protein n=1 Tax=Oligotropha car... 51 1e-05 UniRef50_A9BBH2 Predicted transcriptional regulator n=1 Tax=Proc... 51 1e-05 UniRef50_B3IEH8 Transcriptional regulator, AlpA family n=2 Tax=E... 51 2e-05 UniRef50_A7FCS5 AlpA family protein n=8 Tax=Enterobacteriaceae R... 51 2e-05 UniRef50_C6C8I1 Phage transcriptional regulator, AlpA n=11 Tax=E... 50 2e-05 UniRef50_A3LAG5 Putative uncharacterized protein n=1 Tax=Pseudom... 50 2e-05 UniRef50_A9C2W4 Phage transcriptional regulator, AlpA n=1 Tax=De... 49 3e-05 UniRef50_A3QCD1 Phage transcriptional regulator, AlpA n=1 Tax=Sh... 49 4e-05 UniRef50_A1SRJ4 Phage transcriptional regulator, AlpA n=1 Tax=Ps... 49 4e-05 UniRef50_B4SNK5 Phage transcriptional regulator, AlpA n=1 Tax=St... 48 7e-05 UniRef50_B0QSY9 Putative uncharacterized protein n=1 Tax=Haemoph... 48 1e-04 UniRef50_D2U094 Phage transcriptional regulator n=1 Tax=Arsenoph... 45 6e-04 Sequences not found previously or not previously below threshold: UniRef50_D2QCK8 Phage transcriptional regulator, AlpA n=1 Tax=Sp... 53 3e-06 UniRef50_B3GXK5 Putative uncharacterized protein n=2 Tax=Pasteur... 51 9e-06 UniRef50_A1W680 Phage transcriptional regulator, AlpA n=2 Tax=Ac... 51 9e-06 UniRef50_Q0AAZ5 Phage transcriptional regulator, AlpA n=1 Tax=Al... 51 1e-05 UniRef50_A3W5U3 Putative uncharacterized protein n=1 Tax=Roseova... 50 2e-05 UniRef50_C0VMY7 Putative uncharacterized protein n=1 Tax=Acineto... 50 2e-05 UniRef50_B8J053 Phage transcriptional regulator, AlpA n=1 Tax=De... 50 2e-05 UniRef50_D0SV87 Predicted protein n=1 Tax=Acinetobacter lwoffii ... 49 3e-05 UniRef50_UPI0001BCF8F6 hypothetical protein COK_1269 n=1 Tax=Man... 49 4e-05 UniRef50_B6B6B2 Transcriptional regulator, AlpA family n=2 Tax=R... 49 4e-05 UniRef50_C7BGF0 Transcriptional regulator gp34 n=1 Tax=Burkholde... 49 5e-05 UniRef50_B7UGV1 Predicted protein n=2 Tax=Escherichia RepID=B7UG... 48 8e-05 UniRef50_B1EIE3 Conserved domain protein n=1 Tax=Escherichia alb... 48 1e-04 UniRef50_B1Y3D5 Phage transcriptional regulator, AlpA n=1 Tax=Le... 48 1e-04 UniRef50_Q7NRD0 Putative uncharacterized protein n=1 Tax=Chromob... 48 1e-04 UniRef50_B1JMJ2 Phage transcriptional regulator, AlpA n=5 Tax=En... 48 1e-04 UniRef50_Q2SXA4 Prophage CP4-57 regulatory protein (AlpA) family... 47 2e-04 UniRef50_A1RET4 Phage transcriptional regulator, AlpA n=2 Tax=Sh... 47 2e-04 UniRef50_O68768 Putative uncharacterized protein Y1108 n=20 Tax=... 47 2e-04 UniRef50_Q8EJS6 DNA-binding protein, putative n=2 Tax=Shewanella... 47 2e-04 UniRef50_Q5P091 Putative uncharacterized protein n=1 Tax=Aromato... 47 2e-04 UniRef50_A1SXJ6 Phage transcriptional regulator, AlpA n=1 Tax=Ps... 47 2e-04 UniRef50_B2RED9 Putative bacteriophage DNA-binding transcription... 47 2e-04 UniRef50_B2PWA4 Putative uncharacterized protein n=1 Tax=Provide... 46 3e-04 UniRef50_B1JQY2 Phage transcriptional regulator, AlpA n=1 Tax=Ye... 46 3e-04 UniRef50_C6RIC6 Transcriptional regulator, AlpA family n=1 Tax=C... 46 3e-04 UniRef50_B5EC14 Phage transcriptional regulator, AlpA n=5 Tax=Ba... 46 3e-04 UniRef50_Q2CB88 Putative uncharacterized protein n=1 Tax=Oceanic... 46 4e-04 UniRef50_A1SV80 Phage transcriptional regulator, AlpA n=1 Tax=Ps... 46 4e-04 UniRef50_C1D7T2 Phage transcriptional regulator, AlpA n=1 Tax=La... 46 4e-04 UniRef50_C1YHU5 Prophage CP4-57 regulatory protein (AlpA) n=2 Ta... 46 4e-04 UniRef50_C6XNR9 Phage transcriptional regulator, AlpA n=1 Tax=Hi... 46 5e-04 UniRef50_B8DSS4 Putative uncharacterized protein n=4 Tax=Bifidob... 46 5e-04 UniRef50_C1TKS7 Predicted transcriptional regulator, COG3311 n=1... 45 7e-04 UniRef50_A3NTN9 Prophage CP4-57 regulatory protein (AlpA) n=4 Ta... 45 7e-04 UniRef50_C6CP56 Phage transcriptional regulator, AlpA n=4 Tax=En... 45 7e-04 >UniRef50_P33997 Prophage CP4-57 regulatory protein alpA n=5 Tax=Enterobacteriaceae RepID=ALPA_ECOLI Length = 70 Score = 87.9 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 70/70 (100%), Positives = 70/70 (100%) Query: 1 MNNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEID 60 MNNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEID Sbjct: 1 MNNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEID 60 Query: 61 EWLSQRCKLI 70 EWLSQRCKLI Sbjct: 61 EWLSQRCKLI 70 >UniRef50_Q1RDI7 Possible prophage regulatory protein n=15 Tax=Enterobacteriaceae RepID=Q1RDI7_ECOUT Length = 98 Score = 82.2 bits (202), Expect = 5e-15, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 41/59 (69%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 + RILR+P + Q G++R+TIY+ +NP S YDATFP+ LG SVGW + ID+WL Sbjct: 10 TPSRILRMPELSQLLGISRSTIYEKMNPLSKYYDATFPRPVRLGSGSVGWRSSAIDKWL 68 >UniRef50_Q0HJK3 Phage transcriptional regulator, AlpA n=2 Tax=Shewanella RepID=Q0HJK3_SHESM Length = 71 Score = 81.4 bits (200), Expect = 8e-15, Method: Composition-based stats. Identities = 33/65 (50%), Positives = 47/65 (72%) Query: 1 MNNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEID 60 +++ + I+RL +VI+ TG++R+TIYD NPKSPRYD TFP+K LG ++VGW EI+ Sbjct: 2 LDSNPSYSIVRLASVIKLTGLSRSTIYDKQNPKSPRYDHTFPQKVSLGPRAVGWYFGEIE 61 Query: 61 EWLSQ 65 WL Sbjct: 62 SWLKS 66 >UniRef50_C4L905 Phage transcriptional regulator, AlpA n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4L905_TOLAT Length = 117 Score = 81.0 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 25/59 (42%), Positives = 37/59 (62%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 RI+R+ ++R+TIYD LNPKSPR+D TFP+ LG ++GW ++ W+S Sbjct: 54 DRIIRIKEFAAMISLSRSTIYDRLNPKSPRFDPTFPRPIKLGASAIGWHLVDVAAWISS 112 >UniRef50_D0T2W6 Predicted protein n=2 Tax=Acinetobacter radioresistens RepID=D0T2W6_ACIRA Length = 73 Score = 80.2 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 30/62 (48%), Positives = 42/62 (67%) Query: 4 RSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 S + +L+L VI K ++R+TIYD L+ KS RYD FPK R LG+ SV W+E E+++WL Sbjct: 8 TSTMCMLKLKDVINKCQISRSTIYDKLDQKSKRYDPDFPKPRKLGMNSVAWVENEVEQWL 67 Query: 64 SQ 65 Sbjct: 68 KN 69 >UniRef50_D1P3D5 Conserved domain protein n=1 Tax=Providencia rustigianii DSM 4541 RepID=D1P3D5_9ENTR Length = 80 Score = 79.9 bits (196), Expect = 2e-14, Method: Composition-based stats. Identities = 28/66 (42%), Positives = 41/66 (62%) Query: 2 NNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDE 61 N +RILR+ + G++R++IY+ LNP+S YD FPK LG SVGW A +++ Sbjct: 14 QNNLPIRILRMTELTVMLGISRSSIYEKLNPRSKYYDENFPKPIKLGASSVGWHYASVEK 73 Query: 62 WLSQRC 67 WL+ R Sbjct: 74 WLTSRM 79 >UniRef50_Q7P0B9 Probable prophage regulatory protein n=7 Tax=Proteobacteria RepID=Q7P0B9_CHRVO Length = 72 Score = 79.9 bits (196), Expect = 2e-14, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 6/66 (9%) Query: 3 NRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEW 62 +R LRLP VI G++R+++YD + +FP LG KSV W+ +EID W Sbjct: 9 TAQPLRFLRLPEVISTCGLSRSSVYDAIK------RGSFPAPVPLGGKSVAWLSSEIDVW 62 Query: 63 LSQRCK 68 ++ R Sbjct: 63 MAGRIA 68 >UniRef50_Q3SF41 Possible Transcriptional Regulator n=2 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SF41_THIDA Length = 98 Score = 79.1 bits (194), Expect = 4e-14, Method: Composition-based stats. Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 3/65 (4%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPR---YDATFPKKRMLGVKSVGWIEAEIDEWL 63 RILR V +TG++R++IY L R YD TFPK +G K+VGWIEAEI+ WL Sbjct: 29 TRILRRKQVEARTGLSRSSIYARLRQNPKRPGDYDPTFPKPVSVGAKAVGWIEAEIEAWL 88 Query: 64 SQRCK 68 + + + Sbjct: 89 TAQIQ 93 >UniRef50_B7SYF9 Gp29 n=2 Tax=root RepID=B7SYF9_9CAUD Length = 129 Score = 79.1 bits (194), Expect = 4e-14, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 6/66 (9%) Query: 3 NRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEW 62 + +++P V ++TG+ + TIYD ++ TFP LG +VGWIEAE+D W Sbjct: 59 ATEPLVFIKMPEVKRRTGLGKTTIYDRISA------GTFPAPVPLGGNAVGWIEAEVDAW 112 Query: 63 LSQRCK 68 + R Sbjct: 113 QAARVA 118 >UniRef50_Q8Z105 Phage DNA binding protein n=5 Tax=Enterobacteriaceae RepID=Q8Z105_SALTI Length = 107 Score = 78.7 bits (193), Expect = 5e-14, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 6/68 (8%) Query: 1 MNNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEID 60 +++ R +RLP V+ G++R+TIYD ++ ++ FPK+ LG K+V W ++EI Sbjct: 19 VSDTVHERFIRLPEVMHLCGLSRSTIYDLISREA------FPKQISLGGKNVAWAQSEIT 72 Query: 61 EWLSQRCK 68 W++ R Sbjct: 73 AWMTDRIA 80 >UniRef50_Q4FTD7 Possible prophage regulatory protein AlpA n=5 Tax=Moraxellaceae RepID=Q4FTD7_PSYA2 Length = 93 Score = 78.7 bits (193), Expect = 5e-14, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 39/65 (60%) Query: 4 RSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 ++L + V TG++R+TIY+ +N KS RYD TFPKK L V W+ +EI EW+ Sbjct: 25 NHIPQLLNIKDVGSYTGLSRSTIYEMVNEKSDRYDPTFPKKVQLTQVRVVWVASEIAEWI 84 Query: 64 SQRCK 68 + + Sbjct: 85 NNKIA 89 >UniRef50_P12552 Uncharacterized protein ORF88 n=40 Tax=root RepID=Y9K_BPP4 Length = 88 Score = 78.7 bits (193), Expect = 5e-14, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 6/64 (9%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 + R LR+P V+ G++R+TIY+ + FP + LG K+V W+ +E+ W++ Sbjct: 23 TQERFLRVPEVMHLCGLSRSTIYELIRK------GEFPPQVSLGGKNVAWLHSEVTAWMA 76 Query: 65 QRCK 68 R Sbjct: 77 GRIA 80 >UniRef50_B2K8D1 Phage transcriptional regulator, AlpA n=2 Tax=Yersinia RepID=B2K8D1_YERPB Length = 75 Score = 78.7 bits (193), Expect = 6e-14, Method: Composition-based stats. Identities = 33/63 (52%), Positives = 51/63 (80%) Query: 6 AVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 +V+ILR+PA+++K G+ R+T+YDWL+P S R+D TFP++ LG K+VGW+E+EID W+ Sbjct: 5 SVKILRIPALVKKLGIGRSTVYDWLDPNSDRHDPTFPQRVKLGAKTVGWLESEIDTWILN 64 Query: 66 RCK 68 + K Sbjct: 65 KTK 67 >UniRef50_Q7MJB2 Predicted transcriptional regulator n=47 Tax=Vibrionaceae RepID=Q7MJB2_VIBVY Length = 73 Score = 77.5 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 39/63 (61%), Gaps = 6/63 (9%) Query: 6 AVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 +R L+L V++KT ++R+ IY +N D FP+ LG +++ W+E+E+DEW+ Sbjct: 15 PMRFLKLKEVMEKTALSRSAIYRKMN------DGEFPESVSLGERAIAWVESEVDEWMEM 68 Query: 66 RCK 68 R + Sbjct: 69 RLE 71 >UniRef50_A1WW70 Phage transcriptional regulator, AlpA n=2 Tax=Gammaproteobacteria RepID=A1WW70_HALHL Length = 71 Score = 76.0 bits (186), Expect = 3e-13, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 41/67 (61%), Gaps = 6/67 (8%) Query: 2 NNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDE 61 + R+LR+ +VI++ G+ R+TIY + + FPK LG +++ W E++I+E Sbjct: 8 GIKPNERLLRINSVIKRVGLGRSTIYKKVK------EGGFPKPIKLGERAIAWRESDIEE 61 Query: 62 WLSQRCK 68 W+S+R + Sbjct: 62 WISRRHQ 68 >UniRef50_B4S218 Phage transcriptional regulator, AlpA n=2 Tax=Gammaproteobacteria RepID=B4S218_ALTMD Length = 80 Score = 76.0 bits (186), Expect = 3e-13, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 6/61 (9%) Query: 6 AVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 RILRLP V KTG R+TIY + + FP+ +G ++VGW+E++ID+W+ Sbjct: 17 QQRILRLPEVKAKTGFGRSTIYALMA------NGEFPRSIRIGARAVGWLESDIDQWIET 70 Query: 66 R 66 R Sbjct: 71 R 71 >UniRef50_A4G2Z1 Prophage CP4-57 regulatory protein alpA n=2 Tax=Oxalobacteraceae RepID=A4G2Z1_HERAR Length = 73 Score = 75.6 bits (185), Expect = 4e-13, Method: Composition-based stats. Identities = 29/65 (44%), Positives = 40/65 (61%) Query: 2 NNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDE 61 ++R+ + +KTG+ +++Y+ LN KS YD FPK LGV SVGWIE E+D Sbjct: 4 TANFLTNVIRIKRLKEKTGLGNSSVYNKLNFKSKYYDCDFPKPIQLGVSSVGWIEGEVDI 63 Query: 62 WLSQR 66 WLS R Sbjct: 64 WLSSR 68 >UniRef50_B9B2T4 Conserved domain protein n=1 Tax=Burkholderia multivorans CGD1 RepID=B9B2T4_9BURK Length = 95 Score = 75.6 bits (185), Expect = 4e-13, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 46/65 (70%), Gaps = 5/65 (7%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 +A+RILR+ ++++T ++RAT+Y + D TFPKK L V+S+G++E+E+D W++ Sbjct: 32 NALRILRIKQLVERTNLSRATLYVLMAS-----DPTFPKKIKLTVRSIGFLESEVDAWIA 86 Query: 65 QRCKL 69 R +L Sbjct: 87 ARAEL 91 >UniRef50_Q46Z77 Prophage CP4-57 regulatory n=2 Tax=Burkholderiaceae RepID=Q46Z77_RALEJ Length = 87 Score = 75.2 bits (184), Expect = 6e-13, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 6/63 (9%) Query: 6 AVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 R +RLP VI G+ ++IYD + FPK L KSV W+ +EI +W+ Sbjct: 27 PERFMRLPEVIAVCGLPASSIYDGMR------RGDFPKPVPLAGKSVAWLSSEIRQWMES 80 Query: 66 RCK 68 R Sbjct: 81 RIA 83 >UniRef50_A1TYD2 Phage transcriptional regulator, AlpA n=3 Tax=Proteobacteria RepID=A1TYD2_MARAV Length = 75 Score = 74.9 bits (183), Expect = 7e-13, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 6/62 (9%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 R+LR V TG +R+ IY+ + TFPK +G ++V W E+ I W+++R Sbjct: 16 DRMLRRKEVEAITGRSRSAIYEGMAA------GTFPKPVKIGARAVAWPESAIRNWIAER 69 Query: 67 CK 68 + Sbjct: 70 ME 71 >UniRef50_A0Q3W1 Regulatory protein, AlpA family n=6 Tax=Francisella RepID=A0Q3W1_FRATN Length = 59 Score = 74.9 bits (183), Expect = 7e-13, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 6/62 (9%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 ++ILRL V++ TG ++ TIY W+N FPK L SVGW+EA+I++W+ + Sbjct: 1 MKILRLKQVVEMTGTSKTTIYRWINANQ------FPKPINLSHASVGWLEADINDWIQSK 54 Query: 67 CK 68 + Sbjct: 55 IQ 56 >UniRef50_B5SEZ3 Bacteriophage dna-binding protein n=4 Tax=Proteobacteria RepID=B5SEZ3_RALSO Length = 88 Score = 74.9 bits (183), Expect = 8e-13, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 6/63 (9%) Query: 6 AVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 A R LRLP V+ G+AR++IY+ + + FP+ L V W+++EI +W++ Sbjct: 28 AERFLRLPEVMSTCGLARSSIYEKVA------NGDFPQPVRLTRCCVAWVDSEIRQWMAA 81 Query: 66 RCK 68 R Sbjct: 82 RIA 84 >UniRef50_Q46YP9 Prophage CP4-57 regulatory n=1 Tax=Ralstonia eutropha JMP134 RepID=Q46YP9_RALEJ Length = 67 Score = 74.1 bits (181), Expect = 1e-12, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 7/67 (10%) Query: 1 MNNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEID 60 MN + RI+RLP V ++ G+ + IY + D TFP LG ++ GWIE E+ Sbjct: 1 MNTQPQRRIIRLPEVCERVGLGKTAIYGRIK------DHTFPSPIKLG-RASGWIEEEVQ 53 Query: 61 EWLSQRC 67 +W+ ++ Sbjct: 54 QWVDEQI 60 >UniRef50_Q0HVT5 Phage transcriptional regulator, AlpA n=14 Tax=cellular organisms RepID=Q0HVT5_SHESR Length = 73 Score = 74.1 bits (181), Expect = 1e-12, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 6/65 (9%) Query: 4 RSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 ++++R+ VI TG+AR+TIY +++ FPK LG +SV W+E+E+ EW+ Sbjct: 2 TLNIKLIRIKDVIDTTGLARSTIYKYVDK------GIFPKAVKLGSRSVAWVESEVQEWI 55 Query: 64 SQRCK 68 +R Sbjct: 56 LERIA 60 >UniRef50_Q0HGG2 Phage transcriptional regulator, AlpA n=3 Tax=Bacteria RepID=Q0HGG2_SHESM Length = 66 Score = 74.1 bits (181), Expect = 1e-12, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 40/63 (63%), Gaps = 6/63 (9%) Query: 6 AVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 + +I+RLP V +TG++R++IY ++ FP LG ++VGW+EA+I++WL + Sbjct: 2 SNKIMRLPEVKSRTGLSRSSIYLRISK------GEFPASISLGDRAVGWLEADIEQWLDE 55 Query: 66 RCK 68 R Sbjct: 56 RIA 58 >UniRef50_A4SQA2 Prophage regulatory protein n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449 RepID=A4SQA2_AERS4 Length = 69 Score = 74.1 bits (181), Expect = 1e-12, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 6/65 (9%) Query: 3 NRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEW 62 + +R+LR+ VI K G+++ TIY + + TFP+ +G KSV W+E EI++W Sbjct: 2 SEQNIRLLRIKDVISKVGLSKPTIYLRMK------EGTFPRPVSIGPKSVAWVEHEINDW 55 Query: 63 LSQRC 67 L+ + Sbjct: 56 LTAKI 60 >UniRef50_C6RQK1 Phage transcriptional regulator, AlpA n=3 Tax=Acinetobacter RepID=C6RQK1_ACIRA Length = 76 Score = 73.7 bits (180), Expect = 1e-12, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 +I+ + V+Q T ++RA IY+ +N KS YD TFPK L +GW EI++W+ + Sbjct: 13 QIVNIKEVVQFTSISRAKIYEMINEKSKYYDPTFPKPVRLSESRIGWSAWEINQWIEDKL 72 Query: 68 K 68 + Sbjct: 73 E 73 >UniRef50_D2TNW8 Putative uncharacterized protein n=1 Tax=Citrobacter rodentium ICC168 RepID=D2TNW8_CITRO Length = 79 Score = 73.7 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 6/63 (9%) Query: 6 AVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 A R +R+P V+ + G +R T+Y+ + + FP + +G + V ++E+EIDEW+ Sbjct: 16 AKRFIRVPDVLNRVGFSRTTLYERIK------EGNFPDRVKIGPRCVAFVESEIDEWIEA 69 Query: 66 RCK 68 + Sbjct: 70 TIR 72 >UniRef50_UPI0000E0FEEA phage transcriptional regulator, AlpA n=1 Tax=Glaciecola sp. HTCC2999 RepID=UPI0000E0FEEA Length = 71 Score = 73.7 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 8/66 (12%) Query: 1 MNNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRML--GVKSVGWIEAE 58 M + RILR+ V +KTG++++ IY + ++ FP+ L G +VGW+E++ Sbjct: 1 MCSTKTRRILRINDVAKKTGLSKSYIYALV------HNGQFPQSIRLVKGGTAVGWLESD 54 Query: 59 IDEWLS 64 I++W+ Sbjct: 55 IEQWID 60 >UniRef50_A5UG77 Predicted transcriptional regulator n=1 Tax=Haemophilus influenzae PittGG RepID=A5UG77_HAEIG Length = 71 Score = 73.7 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 6/64 (9%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 A R ++LP V+ KTG+ R++IY +N FP+ L ++ W+E+E++ W+ Sbjct: 7 QAERFIKLPEVMNKTGLGRSSIYRKMNT------GDFPRSIQLNKNNIVWLESEVNAWMQ 60 Query: 65 QRCK 68 + + Sbjct: 61 AQIE 64 >UniRef50_D0W4G8 Conserved domain protein n=1 Tax=Neisseria cinerea ATCC 14685 RepID=D0W4G8_NEICI Length = 86 Score = 73.3 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 39/63 (61%) Query: 6 AVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 + R+LR+ V +K G+ + I+ +PK+ RYDATFPK + + W+E+E+D WLS Sbjct: 13 SQRVLRVNQVSEKVGLCVSAIWAKTSPKNARYDATFPKPFKVSANATVWLESELDAWLSA 72 Query: 66 RCK 68 + Sbjct: 73 KAA 75 >UniRef50_Q13HX3 Phage transcriptional regulator, AlpA n=5 Tax=Proteobacteria RepID=Q13HX3_BURXL Length = 75 Score = 73.3 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 6/63 (9%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 R++RL V + G+ +T+Y +L FP+ +G V W+E+EID W++ R Sbjct: 14 RLIRLREVRTRVGLGASTVYRYLAA------GKFPRPVEIGGGRVAWVESEIDAWIASRR 67 Query: 68 KLI 70 +++ Sbjct: 68 EVV 70 >UniRef50_A3Z0Z5 DNA-binding protein, putative n=2 Tax=Synechococcus RepID=A3Z0Z5_9SYNE Length = 68 Score = 73.3 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 38/66 (57%), Gaps = 6/66 (9%) Query: 3 NRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEW 62 + R+LRLP VI + G++R TIY + FP++ ++G ++V W + E++ W Sbjct: 2 TSATDRLLRLPEVIHRVGLSRTTIYSLIAT------GEFPRQIVIGPRAVAWSQQELEAW 55 Query: 63 LSQRCK 68 ++ + + Sbjct: 56 ITSKRQ 61 >UniRef50_C2LJX4 Possible phage transcriptional regulator n=1 Tax=Proteus mirabilis ATCC 29906 RepID=C2LJX4_PROMI Length = 68 Score = 73.3 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 6/61 (9%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 ++LRL V+ +TG +++ Y ++ FPK+ +G +SV +IE+E+DEW+ QR Sbjct: 3 YKLLRLDEVLDRTGYSKSWTYKLIDK------GEFPKQVKIGSRSVRFIESEVDEWIEQR 56 Query: 67 C 67 Sbjct: 57 I 57 >UniRef50_B9THH9 Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9THH9_RICCO Length = 376 Score = 72.9 bits (178), Expect = 3e-12, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 3/70 (4%) Query: 2 NNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLG---VKSVGWIEAE 58 R ++LRL V Q TG+ R++IY ++P+S YD TFP+ L +VGW E + Sbjct: 303 GGRRVGKVLRLRQVEQMTGLKRSSIYYRMDPRSRYYDPTFPRCFSLSTTESGAVGWDEEQ 362 Query: 59 IDEWLSQRCK 68 ++ W++ + Sbjct: 363 VNAWVAVQVA 372 >UniRef50_A5W5Z3 Phage transcriptional regulator, AlpA n=2 Tax=Pseudomonas RepID=A5W5Z3_PSEP1 Length = 70 Score = 72.5 bits (177), Expect = 3e-12, Method: Composition-based stats. Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 6/59 (10%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 R+LRLP V++ TGM R T+Y + + TFPK+ +G KSV W +++I++W++ Sbjct: 8 DRLLRLPDVLRITGMGRNTVYTRIK------EGTFPKQVKIGPKSVAWRQSDINQWMAS 60 >UniRef50_B0U0W1 Phage transcriptional regulator, AlpA n=3 Tax=Gammaproteobacteria RepID=B0U0W1_FRAP2 Length = 66 Score = 72.5 bits (177), Expect = 4e-12, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 39/61 (63%), Gaps = 6/61 (9%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 +I+RL VI+ TG++R+TIYD++ FP++ LG S GW+ +E+DEWL R Sbjct: 3 KIIRLKTVIEMTGLSRSTIYDYMA------RGLFPRQITLGENSRGWLYSEVDEWLETRI 56 Query: 68 K 68 + Sbjct: 57 Q 57 >UniRef50_B2JL38 Phage transcriptional regulator, AlpA n=2 Tax=Proteobacteria RepID=B2JL38_BURP8 Length = 71 Score = 72.2 bits (176), Expect = 5e-12, Method: Composition-based stats. Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 6/57 (10%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 R+LR+P V+++TGM+ T+Y ++ D TFP+ LG V W+E+EID W+ Sbjct: 5 ERLLRMPEVVRRTGMSSTTVYRRIS------DGTFPRPVSLGCNRVAWLESEIDAWI 55 >UniRef50_Q1Q868 Phage transcriptional regulator, AlpA n=1 Tax=Psychrobacter cryohalolentis K5 RepID=Q1Q868_PSYCK Length = 86 Score = 71.8 bits (175), Expect = 6e-12, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 37/62 (59%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 R++ L V+ T ++ TIYD L+ +S RYD TFP++ L V W+E+EI +WL + Sbjct: 21 PRMVPLKDVVYFTALSSTTIYDMLDKRSSRYDPTFPRQVKLSKGRVAWVESEITQWLESK 80 Query: 67 CK 68 Sbjct: 81 MA 82 >UniRef50_A1SRJ5 Phage transcriptional regulator, AlpA n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SRJ5_PSYIN Length = 74 Score = 71.4 bits (174), Expect = 8e-12, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 40/63 (63%), Gaps = 6/63 (9%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 ++ILRL V++KTG++RA +Y + D FP + ++SVGW+++E++ W+ R Sbjct: 1 MKILRLADVVKKTGLSRAMLYKLMK------DGRFPLNLHISMRSVGWVDSEVEIWMENR 54 Query: 67 CKL 69 ++ Sbjct: 55 LEM 57 >UniRef50_Q1RPF9 ECs3513 protein n=4 Tax=Escherichia RepID=Q1RPF9_ECOLX Length = 72 Score = 71.4 bits (174), Expect = 9e-12, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 6/65 (9%) Query: 4 RSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 S R +R+P V+ + G +R T+Y+ + + FP + +G + V ++E+EIDEW+ Sbjct: 7 TSVKRFIRVPDVLNRVGFSRTTLYERIK------EGNFPDRVKIGPRCVAFVESEIDEWI 60 Query: 64 SQRCK 68 + Sbjct: 61 EAAIR 65 >UniRef50_Q5QX32 Prophage CP4-57 regulatory protein-like protein n=2 Tax=Idiomarina RepID=Q5QX32_IDILO Length = 68 Score = 71.4 bits (174), Expect = 9e-12, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 6/62 (9%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 +R LR+ V ++ G+ R +IY +N + TFPK + K V W+++E+DEW+ +R Sbjct: 1 MRFLRINEVRERIGLGRTSIYKMVN------EGTFPKPVRVLGKKVAWVDSEVDEWMLER 54 Query: 67 CK 68 Sbjct: 55 IA 56 >UniRef50_C6CIY7 Phage transcriptional regulator, AlpA n=3 Tax=Proteobacteria RepID=C6CIY7_DICZE Length = 70 Score = 71.4 bits (174), Expect = 9e-12, Method: Composition-based stats. Identities = 29/67 (43%), Positives = 37/67 (55%), Gaps = 6/67 (8%) Query: 2 NNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDE 61 N RILR V KTG RA IY+ + + FPK LGV++VGW AEID+ Sbjct: 7 NLVPERRILRRAEVEAKTGFKRAHIYNLMK------EGKFPKALHLGVRAVGWDSAEIDQ 60 Query: 62 WLSQRCK 68 W++ R K Sbjct: 61 WITDRLK 67 >UniRef50_A4CWC5 Predicted transcriptional regulator n=1 Tax=Synechococcus sp. WH 7805 RepID=A4CWC5_SYNPV Length = 64 Score = 71.0 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 39/64 (60%), Gaps = 6/64 (9%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 ++ + +RLP V + T +++++IY + FPK+ LG +SV W++++I++W + Sbjct: 3 TSTQFIRLPQVKEITSLSKSSIYRLMEV------GDFPKQVALGARSVVWVKSQIEDWCA 56 Query: 65 QRCK 68 ++ Sbjct: 57 EKVA 60 >UniRef50_D0M6T1 Phage transcriptional regulator AlpA n=1 Tax=Vibrio sp. Ex25 RepID=D0M6T1_VIBSE Length = 66 Score = 71.0 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 6/58 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 +I+RLP VI TG++R+TIY ++ +FP LG ++VGW++ +I++WL Sbjct: 4 KIIRLPEVIDMTGLSRSTIYLRMS------QGSFPLSISLGERAVGWLKVDIEKWLDA 55 >UniRef50_A4TK05 Transcriptional regulator n=21 Tax=Enterobacteriaceae RepID=A4TK05_YERPP Length = 61 Score = 70.6 bits (172), Expect = 2e-11, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 40/63 (63%), Gaps = 6/63 (9%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 ++ ++LRL V QKTG+ R+ IY ++ + FP+ +G SV W+E+EIDEW++ Sbjct: 2 TSYQLLRLRQVEQKTGLKRSQIYLYMK------EGAFPRSIKIGPASVAWLESEIDEWIN 55 Query: 65 QRC 67 ++ Sbjct: 56 KKL 58 >UniRef50_A1SV81 Phage transcriptional regulator, AlpA n=4 Tax=Gammaproteobacteria RepID=A1SV81_PSYIN Length = 79 Score = 70.6 bits (172), Expect = 2e-11, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 9/69 (13%) Query: 3 NRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLG---VKSVGWIEAEI 59 + +I+RLP V TG+ARATIY + FP L ++VGW+E EI Sbjct: 2 TTKSKKIIRLPEVKDMTGLARATIYKKMATD------DFPMSINLSSGCGRAVGWVEIEI 55 Query: 60 DEWLSQRCK 68 +W+++R + Sbjct: 56 LDWINERIE 64 >UniRef50_A0K329 Phage transcriptional regulator, AlpA n=1 Tax=Burkholderia cenocepacia HI2424 RepID=A0K329_BURCH Length = 380 Score = 70.2 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 3/67 (4%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGV---KSVGWIEAEIDE 61 +A ++ RL V++ TG+ R++IY+ ++ S YD+TFP+ LG + GW E + Sbjct: 310 TAGKVARLKRVMELTGLGRSSIYNRMDEGSKHYDSTFPRSFKLGSGEAGATGWDEDAVKS 369 Query: 62 WLSQRCK 68 W++ + Sbjct: 370 WVAAQAA 376 >UniRef50_C2LH22 Putative uncharacterized protein n=1 Tax=Proteus mirabilis ATCC 29906 RepID=C2LH22_PROMI Length = 85 Score = 70.2 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 6/68 (8%) Query: 1 MNNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEID 60 MN + +R+PAV++ TG++R+TI ++ FPK+ L V+ V W E+ Sbjct: 1 MNIKLPTNPIRMPAVLKLTGLSRSTI------RTLEKKGDFPKRMYLSVRCVAWEAHEVY 54 Query: 61 EWLSQRCK 68 EW+ ++ K Sbjct: 55 EWIDKKAK 62 >UniRef50_Q2NDG2 Putative uncharacterized protein n=1 Tax=Erythrobacter litoralis HTCC2594 RepID=Q2NDG2_ERYLH Length = 77 Score = 69.8 bits (170), Expect = 2e-11, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 6/65 (9%) Query: 4 RSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 R R++ LP V + G+ R+TIY W+ + FP LG SV W E ID W+ Sbjct: 17 RQVTRLIHLPEVQHRVGLGRSTIYRWMA------EGKFPGPVELGGYSVAWEERAIDVWI 70 Query: 64 SQRCK 68 SQR Sbjct: 71 SQRLD 75 >UniRef50_C6AQQ2 Transcriptional regulator, AlpA family n=6 Tax=Pasteurellaceae RepID=C6AQQ2_AGGAN Length = 69 Score = 69.5 bits (169), Expect = 3e-11, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 43/65 (66%) Query: 4 RSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 + RI+R ++ G++++T DW NPKS RY FPKK LGV SVG++E+EI+ ++ Sbjct: 2 NQSDRIIRRLDTMKMLGVSKSTFADWQNPKSKRYRPDFPKKIQLGVNSVGYLESEINSYI 61 Query: 64 SQRCK 68 ++ + Sbjct: 62 AKLAE 66 >UniRef50_A4SPW1 Probable prophage regulatory protein n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449 RepID=A4SPW1_AERS4 Length = 77 Score = 69.5 bits (169), Expect = 3e-11, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 7/65 (10%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLG-VKSVGWIEAEIDEWL 63 A+R +R+ I +TG+++++IYD + FPK LG +SV +IEAEID W+ Sbjct: 13 PALRFIRVREAINRTGLSKSSIYDMMA------QGQFPKTVRLGSGRSVAFIEAEIDAWM 66 Query: 64 SQRCK 68 ++R Sbjct: 67 AERVA 71 >UniRef50_B8L4N0 Putative transcriptional regulator n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L4N0_9GAMM Length = 79 Score = 69.5 bits (169), Expect = 3e-11, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 6/62 (9%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 +LRL V +TG+A+ TIYD + FP + LG W E EI+ W+ + Sbjct: 11 PNLLRLKEVSARTGLAKNTIYDRIR------RGEFPAQIDLGGNCSAWSEDEINAWIRSK 64 Query: 67 CK 68 + Sbjct: 65 ME 66 >UniRef50_Q47ZW9 Putative uncharacterized protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47ZW9_COLP3 Length = 103 Score = 69.5 bits (169), Expect = 3e-11, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 36/62 (58%), Gaps = 6/62 (9%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 +R++RL V+ +G+ R++IY ++ + FP LG +++ W +E++EW+ + Sbjct: 1 MRLIRLKEVMSISGLGRSSIYKFM------EEGRFPMSISLGERAIAWEVSEVEEWVLDK 54 Query: 67 CK 68 + Sbjct: 55 IE 56 >UniRef50_C6DCW7 Phage transcriptional regulator, AlpA n=3 Tax=Pectobacterium carotovorum RepID=C6DCW7_PECCP Length = 86 Score = 69.1 bits (168), Expect = 4e-11, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 39/62 (62%), Gaps = 6/62 (9%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 R++RLP V+ TG++R+T+Y+ K+ FP + LG K+V W+E+EI W+++R Sbjct: 23 ERLMRLPEVLHVTGISRSTLYELSGRKA------FPARVPLGGKNVAWVESEIHHWVAER 76 Query: 67 CK 68 Sbjct: 77 IA 78 >UniRef50_C1DSG0 Prophage CP4-57 regulatory, AlpA-like protein n=1 Tax=Azotobacter vinelandii DJ RepID=C1DSG0_AZOVD Length = 95 Score = 69.1 bits (168), Expect = 4e-11, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 6/60 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 R+LRLP V KTG ++ IY + TFP +G SV W+EAE+D+W++ R Sbjct: 20 RLLRLPDVESKTGKSKQAIYAAIRA------GTFPAPVPIGRNSVAWLEAEVDQWIADRL 73 >UniRef50_A3VKJ6 DNA-binding protein, putative n=2 Tax=Proteobacteria RepID=A3VKJ6_9RHOB Length = 59 Score = 69.1 bits (168), Expect = 4e-11, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 6/63 (9%) Query: 6 AVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 +LR V TG++R+ IY ++ FP+ +G ++V W ++I +W++ Sbjct: 2 TDNLLRRAEVEAITGLSRSGIYALMSAN------DFPRPIRVGKRAVAWKSSDITDWINS 55 Query: 66 RCK 68 R Sbjct: 56 RAA 58 >UniRef50_Q2NBH3 Predicted transcriptional regulator n=4 Tax=Sphingomonadales RepID=Q2NBH3_ERYLH Length = 88 Score = 69.1 bits (168), Expect = 4e-11, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 6/64 (9%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 + R++RLP V+ + G+ R IY + + FPK R LG + W+EAEID+W+ Sbjct: 17 TPDRLIRLPEVMARVGLRRTAIYQRMR------EGRFPKSRSLGPRCTVWVEAEIDDWIG 70 Query: 65 QRCK 68 + Sbjct: 71 SVVE 74 >UniRef50_Q0I4F9 Phage transcriptional regulator, AlpA n=2 Tax=Bacteria RepID=Q0I4F9_HAES1 Length = 61 Score = 68.7 bits (167), Expect = 5e-11, Method: Composition-based stats. Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 6/59 (10%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 RILR+ V QKTG+ R+TIY + TFP + LG +S GW E+E+D W+ Q Sbjct: 2 ERILRIKDVCQKTGLPRSTIYARIK------QGTFPAQLKLGARSSGWKESELDLWIEQ 54 >UniRef50_UPI0001AF502E phage transcriptional regulator, AlpA n=1 Tax=Pseudomonas syringae pv. oryzae str. 1_6 RepID=UPI0001AF502E Length = 80 Score = 68.3 bits (166), Expect = 6e-11, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 6/65 (9%) Query: 3 NRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEW 62 + RILRLP V + G RA IY ++ FP+ LG ++VGW +++W Sbjct: 8 TTTQRRILRLPEVQVRIGFKRAHIYSLMS------QGLFPRSVPLGPRAVGWDSLAVEKW 61 Query: 63 LSQRC 67 + R Sbjct: 62 IEDRI 66 >UniRef50_B2JC70 Phage transcriptional regulator, AlpA n=2 Tax=Burkholderiaceae RepID=B2JC70_BURP8 Length = 73 Score = 68.3 bits (166), Expect = 7e-11, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 6/62 (9%) Query: 4 RSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 R+ I+R P V ++TG++R+TIY + TFP LGV+SVGW A+I+ +L Sbjct: 7 RAPTAIMRRPEVERETGLSRSTIYGRIKS------GTFPPPVRLGVRSVGWRSADIEAFL 60 Query: 64 SQ 65 + Sbjct: 61 TS 62 >UniRef50_D2NKU9 Putative transcriptional regulator n=1 Tax=Escherichia coli SE15 RepID=D2NKU9_ECOLX Length = 75 Score = 68.3 bits (166), Expect = 7e-11, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 6/61 (9%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 R+LR+ VI TG+ ++TIY + FP + +G +SV W+E E++EW+ + Sbjct: 14 YRLLRISEVINLTGLPKSTIYLKIKND------EFPNQVSIGSRSVAWVEHEVNEWIEKN 67 Query: 67 C 67 Sbjct: 68 I 68 >UniRef50_A9FCF4 DNA-binding protein, putative n=6 Tax=Rhodobacteraceae RepID=A9FCF4_9RHOB Length = 65 Score = 67.9 bits (165), Expect = 8e-11, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 6/65 (9%) Query: 2 NNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDE 61 N + A + R P V + TG++R TIY ++ FP+ + K+V W E+ I E Sbjct: 4 NTQMAEKHYRRPEVEELTGLSRTTIYAMMS------RGEFPRPVRMTRKAVAWPESAIAE 57 Query: 62 WLSQR 66 WLS R Sbjct: 58 WLSSR 62 >UniRef50_A4JAZ2 Phage transcriptional regulator, AlpA n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JAZ2_BURVG Length = 68 Score = 67.9 bits (165), Expect = 9e-11, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 6/64 (9%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 R++R+ ++ + G++++ IY + FPK LG ++VGW+E++I+ W+ Sbjct: 7 PINRVVRMRCLLGRVGLSKSEIYRRIQA------GAFPKPIPLGTRAVGWLESDINAWID 60 Query: 65 QRCK 68 + K Sbjct: 61 TQAK 64 >UniRef50_A3P008 Prophage CP4-57 regulatory protein (AlpA) n=4 Tax=Burkholderia pseudomallei RepID=A3P008_BURP0 Length = 70 Score = 67.9 bits (165), Expect = 9e-11, Method: Composition-based stats. Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 5/59 (8%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 R+LR+ V+++TG++R+TIY + D TFPKK L ++ G IE ++D W++ R Sbjct: 14 RVLRIKDVVERTGLSRSTIYVLMKS-----DPTFPKKVGLSARTTGVIEHQLDAWIASR 67 >UniRef50_D2NHT3 Hypothetical phage protein n=1 Tax=Escherichia coli SE15 RepID=D2NHT3_ECOLX Length = 65 Score = 67.9 bits (165), Expect = 1e-10, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 12/71 (16%) Query: 1 MNNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGV---KSVGWIEA 57 MN RILR V+ TG++ AT+Y ++ FP + L ++VGW+E+ Sbjct: 1 MNTN---RILRKKEVLHLTGISSATLYRLISK------GFFPLSKRLTGDNGRAVGWLES 51 Query: 58 EIDEWLSQRCK 68 +I+ W++ R + Sbjct: 52 DINNWVNSRMQ 62 >UniRef50_Q2YAI6 Phage transcriptional regulator, AlpA n=1 Tax=Nitrosospira multiformis ATCC 25196 RepID=Q2YAI6_NITMU Length = 76 Score = 67.5 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 6/65 (9%) Query: 2 NNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDE 61 + I R+P V TG++R++IY FP + L +VGW EI Sbjct: 8 DAAPWYEIYRIPRVKGLTGLSRSSIYRL------EALGLFPGRVKLSGSAVGWRSDEIHA 61 Query: 62 WLSQR 66 W++ R Sbjct: 62 WIASR 66 >UniRef50_A1TJN4 Phage transcriptional regulator, AlpA n=28 Tax=Proteobacteria RepID=A1TJN4_ACIAC Length = 75 Score = 67.5 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 6/65 (9%) Query: 2 NNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDE 61 + ++ R+LR P V Q+TG RA IY + K FP++ LGV++VGW E EID+ Sbjct: 14 DAPTSRRVLRRPLVEQRTGFKRAHIYSLMKEK------KFPQRVRLGVRAVGWYEDEIDQ 67 Query: 62 WLSQR 66 WL+QR Sbjct: 68 WLAQR 72 >UniRef50_A3NM12 Prophage CP4-57 regulatory protein (AlpA) n=10 Tax=Burkholderiaceae RepID=A3NM12_BURP6 Length = 78 Score = 67.5 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 6/61 (9%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 ++ LR+ ++ K G+ ++T+Y + TFPK L W+E +ID WL+++ Sbjct: 2 MKALRMKDIVDKVGLGQSTLYRMIAA------GTFPKPFELVPGRTAWLEEDIDAWLAEK 55 Query: 67 C 67 Sbjct: 56 A 56 >UniRef50_C6S833 Putative prophage regulatory protein n=4 Tax=Neisseria RepID=C6S833_NEIML Length = 71 Score = 67.1 bits (163), Expect = 1e-10, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 37/55 (67%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 +LR+ V ++ G++R+T+++W N KS Y A FP+ + VGW+ +EID+++ Sbjct: 5 VLRVNQVAERLGVSRSTVWNWGNTKSRHYRADFPRPFKVSANVVGWLSSEIDDYI 59 >UniRef50_B4RZR3 Phage transcriptional regulator, AlpA n=1 Tax=Alteromonas macleodii 'Deep ecotype' RepID=B4RZR3_ALTMD Length = 70 Score = 67.1 bits (163), Expect = 2e-10, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 6/61 (9%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRCK 68 ILR+ V + G+ + TIY + FP++ LG ++ GW+ +EI++W ++R Sbjct: 12 ILRMSDVEKTVGLKKPTIYKLIKK------GEFPRQINLGGRASGWLLSEINQWKAERIA 65 Query: 69 L 69 + Sbjct: 66 I 66 >UniRef50_B0TKK3 Phage transcriptional regulator, AlpA n=1 Tax=Shewanella halifaxensis HAW-EB4 RepID=B0TKK3_SHEHH Length = 71 Score = 67.1 bits (163), Expect = 2e-10, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Query: 4 RSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 + ++++ VIQ T ++R+TIY +N + FPK L +SV W+ E+++W+ Sbjct: 8 KQPNDLIKIKEVIQMTSLSRSTIYTKMNQQ------DFPKSISLSSRSVVWVRKELEDWI 61 Query: 64 SQRCK 68 + Sbjct: 62 QNKMA 66 >UniRef50_B6AMX6 Phage DNA binding protein n=2 Tax=Bacteria RepID=B6AMX6_9BACT Length = 60 Score = 66.8 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 35/62 (56%), Gaps = 6/62 (9%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 RILRLP V+ G++R+++Y + FP++ L ++ GW +++++W+ + Sbjct: 2 DRILRLPEVLSTVGISRSSLYALIA------QGQFPRQIRLSPRTSGWRLSDVEDWIRAK 55 Query: 67 CK 68 + Sbjct: 56 AE 57 >UniRef50_C8R2I6 Phage transcriptional regulator, AlpA n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R2I6_9DELT Length = 92 Score = 66.8 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 11/73 (15%) Query: 1 MNNRSA--VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRML--GVKS-VGWI 55 +NN+ +++ R+ V +TG+ R+++YD L FP+ L G +S ++ Sbjct: 17 VNNQPPAPLQLERVREVCARTGIPRSSLYDLLKK------GEFPQPVKLGTGKRSQTAFV 70 Query: 56 EAEIDEWLSQRCK 68 EID W+ R Sbjct: 71 SHEIDAWIESRMA 83 >UniRef50_A9IRW1 Strain DSM 12804, complete genome n=1 Tax=Bordetella petrii DSM 12804 RepID=A9IRW1_BORPD Length = 67 Score = 66.8 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 6/61 (9%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 +ILR+ V + TG++R IY + FP++ LG +SVGW+ ++++ W R Sbjct: 5 PQILRITDVTRITGLSRPAIYYNVK------RGLFPRQIQLGPRSVGWLASDVEAWFQSR 58 Query: 67 C 67 Sbjct: 59 I 59 >UniRef50_B0RRY0 Putative uncharacterized protein n=2 Tax=Xanthomonas RepID=B0RRY0_XANCB Length = 142 Score = 66.8 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 7/65 (10%) Query: 2 NNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRML-GVKSVGWIEAEID 60 +RLP VI G++++T+Y W FPK G W+ E+ Sbjct: 71 QTTLPYHFMRLPEVIATVGVSKSTLYAW------AAAGKFPKPVQFPGGNIAAWVSTEVA 124 Query: 61 EWLSQ 65 W+S Sbjct: 125 AWMSA 129 >UniRef50_B1SZZ6 Phage transcriptional regulator, AlpA n=1 Tax=Burkholderia ambifaria MEX-5 RepID=B1SZZ6_9BURK Length = 72 Score = 66.8 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 6/64 (9%) Query: 6 AVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 R+LR V + G++++ IY + TFP LG ++V W E+ +++W+ Sbjct: 13 PERLLRFAEVRARIGLSKSEIYRRI------GAGTFPAGVKLGARAVAWRESAVEDWIRA 66 Query: 66 RCKL 69 ++ Sbjct: 67 LREI 70 >UniRef50_A1U0S6 Phage transcriptional regulator, AlpA n=2 Tax=Gammaproteobacteria RepID=A1U0S6_MARAV Length = 81 Score = 66.4 bits (161), Expect = 2e-10, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 8/62 (12%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLG--VKSVGWIEAEIDEWLSQR 66 I+RL +++TG++R+T+YD + FPK L +VGW+E+E++ W+ R Sbjct: 8 IIRLAETLRRTGLSRSTLYDL------QTAGDFPKSIKLTRQGSAVGWLESEVNAWIEAR 61 Query: 67 CK 68 Sbjct: 62 VA 63 >UniRef50_A7JWM9 Possible bacteriophage transcriptional regulator n=1 Tax=Mannheimia haemolytica PHL213 RepID=A7JWM9_PASHA Length = 68 Score = 66.4 bits (161), Expect = 2e-10, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 6/67 (8%) Query: 2 NNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDE 61 N + R +++ V T ++ IY + FP+ +G S W+E+EI + Sbjct: 3 NTPAKQRFMKIDEVSAVTTLSETQIYRKMKA------GDFPQSISIGANSKVWLESEIQQ 56 Query: 62 WLSQRCK 68 W+ ++ + Sbjct: 57 WIQRKIE 63 >UniRef50_B3Q046 Putative uncharacterized protein n=1 Tax=Rhizobium etli CIAT 652 RepID=B3Q046_RHIE6 Length = 68 Score = 66.4 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 6/63 (9%) Query: 6 AVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 A +IL + VI +TG++R T+Y ++ + FP+ L + VGW E ++D W+ Sbjct: 5 ASKILPIEEVIDRTGLSRRTLYQEIS------EGRFPRPVQLTSRRVGWPENDVDTWIDH 58 Query: 66 RCK 68 + Sbjct: 59 KIA 61 >UniRef50_C4GIW5 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GIW5_9NEIS Length = 74 Score = 66.4 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 1/63 (1%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLG-VKSVGWIEAEIDEWLSQ 65 +ILR G + AT++ NP + R+DA+FPK LG ++VG ++ ++D W++ Sbjct: 3 PKILRPKQAAAYCGFSVATLWAKTNPNNRRHDASFPKPFKLGNGRAVGILKDDLDAWIAT 62 Query: 66 RCK 68 + + Sbjct: 63 QRQ 65 >UniRef50_C4L9N9 Phage transcriptional regulator, AlpA n=11 Tax=Proteobacteria RepID=C4L9N9_TOLAT Length = 79 Score = 66.0 bits (160), Expect = 3e-10, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 6/62 (9%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 RILRL V K+G RA IY + FP+ LGV++VGW EID W+++R Sbjct: 12 RRILRLDEVEAKSGFKRAHIYSLMKK------GEFPQSLRLGVRAVGWDSTEIDLWITER 65 Query: 67 CK 68 K Sbjct: 66 LK 67 >UniRef50_A8AM43 Putative uncharacterized protein n=4 Tax=Enterobacteriaceae RepID=A8AM43_CITK8 Length = 66 Score = 66.0 bits (160), Expect = 3e-10, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 6/65 (9%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 ++ R LRL V K G ++ IY + + FP L + V W+E+E+D W+ Sbjct: 4 NSDRFLRLRQVEDKIGFGKSWIYRQIQLQQ------FPPFIRLNSRHVAWLESEVDAWIH 57 Query: 65 QRCKL 69 QR +L Sbjct: 58 QRIRL 62 >UniRef50_D0BWH4 Phage protein (Fragment) n=1 Tax=Acinetobacter sp. RUH2624 RepID=D0BWH4_9GAMM Length = 56 Score = 66.0 bits (160), Expect = 4e-10, Method: Composition-based stats. Identities = 25/56 (44%), Positives = 39/56 (69%), Gaps = 1/56 (1%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 +++RLP + + TG++R++IYD LNPKS RYD+TFP+ L S W +E+ W+ Sbjct: 2 QLIRLPELEKLTGLSRSSIYDRLNPKSKRYDSTFPRAIKLS-HSSRWRLSEVLNWI 56 >UniRef50_B7VPA4 Predicted transcriptional regulator n=31 Tax=Gammaproteobacteria RepID=B7VPA4_VIBSL Length = 63 Score = 66.0 bits (160), Expect = 4e-10, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 6/64 (9%) Query: 4 RSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 R++RL V+ TG++R+ +Y + + FP + +G ++V W+E+E+ +W+ Sbjct: 3 NVTTRLIRLNEVLVMTGLSRSGMYRSIEKQQ------FPSQVPIGDRAVAWVESEVQDWV 56 Query: 64 SQRC 67 QR Sbjct: 57 RQRV 60 >UniRef50_D0KY14 Phage transcriptional regulator, AlpA n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KY14_HALNC Length = 56 Score = 65.6 bits (159), Expect = 4e-10, Method: Composition-based stats. Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 6/58 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 ILRL V++ TG +R++IY W++ FP+ LGV++VGW +E+ +WL R Sbjct: 4 ILRLHDVLRITGASRSSIYLWVSA------GIFPQPVKLGVRAVGWRRSEVQQWLDDR 55 >UniRef50_B0KMB7 Phage transcriptional regulator, AlpA n=1 Tax=Pseudomonas putida GB-1 RepID=B0KMB7_PSEPG Length = 69 Score = 65.6 bits (159), Expect = 4e-10, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 6/59 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 +LRLP V G++++ IY + FP LG SV W ++ W++++ Sbjct: 10 LLRLPGVCALVGLSKSQIYRLIRA------GEFPAGISLGANSVAWPAEQVSAWVAEKI 62 >UniRef50_B5EWU9 Conserved domain protein n=61 Tax=Enterobacteriaceae RepID=B5EWU9_SALA4 Length = 72 Score = 65.6 bits (159), Expect = 4e-10, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 6/60 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRCK 68 +RLP VI++TG + IY+ + FP + G+++V +IE+EIDEW+ + Sbjct: 12 FIRLPEVIKRTGFGKTWIYELIKA------GRFPSQVKTGIRAVAFIESEIDEWIEATIR 65 >UniRef50_D1UHG7 Phage transcriptional regulator, AlpA n=1 Tax=Burkholderia sp. CCGE1001 RepID=D1UHG7_9BURK Length = 70 Score = 65.6 bits (159), Expect = 5e-10, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 6/62 (9%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 +++R+ V++K G+ RATIY ++ FP+ +G ++ GW E+E++ WL+ R Sbjct: 2 DQVMRMKDVVKKIGLCRATIYAMIS------RGEFPRPIRIGERATGWRESELEGWLANR 55 Query: 67 CK 68 Sbjct: 56 AA 57 >UniRef50_C9PEM5 Putative uncharacterized protein n=1 Tax=Vibrio furnissii CIP 102972 RepID=C9PEM5_VIBFU Length = 75 Score = 65.2 bits (158), Expect = 6e-10, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 7/55 (12%) Query: 9 ILRLPAVIQKTG-MARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEW 62 +LR P V+ TG +R TIY+W+ TFPK +G S+GW+++E D W Sbjct: 15 VLRFPEVLALTGARSRQTIYNWM------ERGTFPKPIKIGPNSIGWLKSECDAW 63 >UniRef50_UPI00016ADB9E regulatory protein, AlpA family n=3 Tax=pseudomallei group RepID=UPI00016ADB9E Length = 63 Score = 65.2 bits (158), Expect = 6e-10, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 6/61 (9%) Query: 6 AVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 A++ILRL V+ G+ + T+Y W+ + FP LG +SVGW ++ W+ Sbjct: 2 ALKILRLIGVLDCVGVKKTTLYRWIR------EGKFPAPVQLGARSVGWRATDVQHWVES 55 Query: 66 R 66 R Sbjct: 56 R 56 >UniRef50_D1TJS7 Putative uncharacterized protein n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1TJS7_9BURK Length = 195 Score = 64.8 bits (157), Expect = 7e-10, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 6/57 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 I+R V ++TG++ +TIY + D TFP +G S GW +I+ +L+ Sbjct: 127 IMRRDEVERETGLSHSTIYKRIK------DGTFPAPLKIGPGSTGWRVTDIEAFLAS 177 >UniRef50_A9D684 Phage transcriptional regulator, AlpA n=2 Tax=Alteromonadales RepID=A9D684_9GAMM Length = 80 Score = 64.8 bits (157), Expect = 8e-10, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 6/66 (9%) Query: 3 NRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEW 62 N+ RI+R P VI +TG+++ T+Y+ + D FP LG ++VG++++E + Sbjct: 2 NQYQPRIIRKPDVINETGLSKLTLYNRIK------DGLFPPPISLGARAVGFVKSECEAV 55 Query: 63 LSQRCK 68 ++ Sbjct: 56 INAMIA 61 >UniRef50_C5CXN0 Phage transcriptional regulator, AlpA n=2 Tax=Variovorax paradoxus S110 RepID=C5CXN0_VARPS Length = 88 Score = 64.8 bits (157), Expect = 8e-10, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 6/57 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 R+ VI+ T ++R T+Y + D FP LG ++ GW A + W+ Sbjct: 22 FFRMADVIRITALSRTTVYRRIA------DGKFPPPVHLGGRASGWPRAALQRWIDD 72 >UniRef50_Q2SPA0 Predicted transcriptional regulator n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SPA0_HAHCH Length = 71 Score = 64.5 bits (156), Expect = 9e-10, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 6/57 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 I R+ + TG++R+TIY+ + +FP LG ++VGW E+ +D+W + Sbjct: 5 IFRIKETTKLTGLSRSTIYERVAS------GSFPPPVSLGHRAVGWFESSLDDWQAS 55 >UniRef50_A4TNW0 Transcriptional regulator n=18 Tax=Enterobacteriaceae RepID=A4TNW0_YERPP Length = 66 Score = 64.1 bits (155), Expect = 1e-09, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 6/60 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 ++RLP VI+K + +++IY ++ FP+ LG +SV W+E+E+DEW+ R Sbjct: 5 NLIRLPEVIEKIRLKKSSIYHLISLNQ------FPRPIKLGPRSVAWVESEVDEWVIIRI 58 >UniRef50_C6MJ06 Phage transcriptional regulator, AlpA n=1 Tax=Nitrosomonas sp. AL212 RepID=C6MJ06_9PROT Length = 76 Score = 63.7 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 6/65 (9%) Query: 4 RSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 + + RL + Q+ ++ ++I+ W FPK L W E+D W+ Sbjct: 10 NISPQFYRLNHLKQRLAVSGSSIWAWTKS------GKFPKPIKLSENCTAWSAVEVDAWV 63 Query: 64 SQRCK 68 R Sbjct: 64 QDRIA 68 >UniRef50_Q28S53 Phage transcriptional regulator, AlpA n=23 Tax=Alphaproteobacteria RepID=Q28S53_JANSC Length = 76 Score = 63.7 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 6/60 (10%) Query: 6 AVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 RI+RL V+ +TG++R+T+Y + + TFP + + V GW E+EI EW+ Sbjct: 4 PDRIVRLTTVLDRTGLSRSTLYRKIA------EGTFPAQLRISVHGAGWRESEIGEWIDN 57 >UniRef50_A4JR07 Phage transcriptional regulator, AlpA n=6 Tax=Burkholderia RepID=A4JR07_BURVG Length = 83 Score = 63.7 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 6/64 (9%) Query: 2 NNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDE 61 N+ A ILR V Q TG++R+TIY + + TFP LG + VGW A+I++ Sbjct: 4 NDDGARTILRRRQVEQCTGLSRSTIYKRMQ------EGTFPPAIALGGRMVGWRAADIEQ 57 Query: 62 WLSQ 65 +L+ Sbjct: 58 FLAD 61 >UniRef50_A3UV40 Transcriptional regulator, putative n=2 Tax=Proteobacteria RepID=A3UV40_VIBSP Length = 74 Score = 63.7 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 6/61 (9%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 ++++L AVI+ T ++R+ IY + + FPK+ L +SV W+E++I W+ + Sbjct: 15 KLIKLEAVIEMTTLSRSAIYRGIR------ECRFPKQVRLSRRSVAWVESDIQNWIKAQV 68 Query: 68 K 68 Sbjct: 69 A 69 >UniRef50_Q0A9S3 Phage transcriptional regulator, AlpA n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A9S3_ALHEH Length = 75 Score = 63.7 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 6/63 (9%) Query: 3 NRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEW 62 R+++ VI TG++ +TI+ + FP + LG + W E+++ EW Sbjct: 7 TACPSRLMKKREVIDVTGLSESTIWRR------EQEGRFPPRIRLGQRMTVWRESDVHEW 60 Query: 63 LSQ 65 L+ Sbjct: 61 LAD 63 >UniRef50_A9IES4 Predicted transcriptional regulator n=1 Tax=Bordetella petrii DSM 12804 RepID=A9IES4_BORPD Length = 86 Score = 63.7 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 6/57 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 RL V++ ++R+T+Y + + FP LG ++ W ++ EW++ Sbjct: 22 FYRLRDVVRIAALSRSTVYRRIA------EGRFPAPIHLGGRASAWPSNDLQEWINS 72 >UniRef50_C8QZM7 Phage transcriptional regulator, AlpA n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QZM7_9DELT Length = 63 Score = 63.7 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 6/63 (9%) Query: 6 AVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 RI+R P + K G++ TI+ FPK+ LG S GW+E E++EW++ Sbjct: 5 PKRIIRKPELWVKVGLSDPTIWRLEKK------GKFPKRLRLGGNSCGWLEHEVNEWINN 58 Query: 66 RCK 68 R Sbjct: 59 RAA 61 >UniRef50_A2PQ69 Prophage CP4-57 regulatory protein (AlpA) n=1 Tax=Vibrio cholerae MZO-3 RepID=A2PQ69_VIBCH Length = 129 Score = 63.7 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 31/58 (53%), Gaps = 6/58 (10%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 ++++R + + TG++RA +Y + + FP++ +G ++ WI E+ W+ Sbjct: 1 MQLIRRKELSELTGISRAHLYLLI------GEGKFPRQIHIGKRASAWIVEEVQAWVD 52 Score = 41.7 bits (97), Expect = 0.008, Method: Composition-based stats. Identities = 9/68 (13%), Positives = 27/68 (39%), Gaps = 8/68 (11%) Query: 2 NNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDE 61 N ++++++ ++ G + T+Y + FP + W +I Sbjct: 64 NLENSMKLVDRKTLLNMIGFNKDTLYRMIKA------GDFPPCV--SKEIPRWKYNDIVT 115 Query: 62 WLSQRCKL 69 W++++ + Sbjct: 116 WVAKKITI 123 >UniRef50_D0M3I3 Predicted transcriptional regulator n=1 Tax=Vibrio sp. Ex25 RepID=D0M3I3_VIBSE Length = 62 Score = 63.3 bits (153), Expect = 2e-09, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 6/61 (9%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 + L L V KT + ++TIY + + FPK + KS W E E+++W+ + Sbjct: 2 LNFLNLEQVETKTTLCKSTIYKLMK------NGEFPKNFTVSGKSKAWDEKEVEDWMMSK 55 Query: 67 C 67 Sbjct: 56 I 56 >UniRef50_D0J4D1 Phage transcriptional regulator, AlpA n=1 Tax=Comamonas testosteroni CNB-2 RepID=D0J4D1_COMTE Length = 283 Score = 63.3 bits (153), Expect = 2e-09, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 6/63 (9%) Query: 3 NRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEW 62 +R ++ + V+ +TG++R+ +Y L FP + +++GW E +++ W Sbjct: 7 SRFTKNVIPMDEVLTRTGLSRSMLYKLLRKD------KFPHPTPMSNRAIGWFETDVENW 60 Query: 63 LSQ 65 L Sbjct: 61 LQA 63 >UniRef50_A3JW32 Prophage CP4-57 regulatory n=1 Tax=Rhodobacterales bacterium HTCC2150 RepID=A3JW32_9RHOB Length = 65 Score = 63.3 bits (153), Expect = 2e-09, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 4/60 (6%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRCK 68 +R+ ++ TG+ +++IY LN ++ FP+ R LG ++V W+ E+ EW+ R Sbjct: 9 FMRISELVATTGIPKSSIYQKLNEENS----DFPRPRRLGPRAVAWMSDEVYEWMRSRVA 64 >UniRef50_UPI0001BCF977 putative prophage CP4-57 regulatory protein n=1 Tax=Mannheimia haemolytica serotype A2 str. BOVINE RepID=UPI0001BCF977 Length = 77 Score = 63.3 bits (153), Expect = 2e-09, Method: Composition-based stats. Identities = 27/58 (46%), Positives = 36/58 (62%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 RI+R QK G+ + T DW NPKS RY FPKK LG SVG++E+EI+ ++ Sbjct: 14 RIIRPIHARQKLGVGKTTFQDWQNPKSKRYRPDFPKKIQLGANSVGYLESEINAFIQS 71 >UniRef50_D1NFX2 Prophage CP4-57 regulatory protein n=1 Tax=Haemophilus influenzae HK1212 RepID=D1NFX2_HAEIN Length = 82 Score = 62.9 bits (152), Expect = 3e-09, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 35/62 (56%) Query: 2 NNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDE 61 + A R LR + ++ G++ T+ DW NPK+ RY FPK + + ++E+EI+ Sbjct: 11 DTEQAPRFLRRKSTAERLGVSLTTLDDWRNPKAKRYRPDFPKAIKVANGATCFLESEINA 70 Query: 62 WL 63 ++ Sbjct: 71 YV 72 >UniRef50_C0GR58 Phage transcriptional regulator, AlpA n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GR58_9DELT Length = 62 Score = 62.9 bits (152), Expect = 3e-09, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 36/67 (53%), Gaps = 6/67 (8%) Query: 3 NRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEW 62 + ++LRL V+ + ++++T +D + FPK LG ++ W E++ID+ Sbjct: 2 DNQTEKLLRLRDVLDRIPVSKSTWWDGVKK------GRFPKPIKLGPRTTCWKESDIDDL 55 Query: 63 LSQRCKL 69 +++ ++ Sbjct: 56 INKGWQI 62 >UniRef50_B1JDS6 Phage transcriptional regulator, AlpA n=2 Tax=Pseudomonadaceae RepID=B1JDS6_PSEPW Length = 74 Score = 62.9 bits (152), Expect = 3e-09, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 6/63 (9%) Query: 6 AVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 + ++ V TG++R+ IY + + TFP++ L K V W+EAEI W + Sbjct: 11 TRKFIKRQDVEAITGLSRSEIYRRMAAQ------TFPQQIALSPKCVVWVEAEILTWCDE 64 Query: 66 RCK 68 R Sbjct: 65 RIA 67 >UniRef50_Q2Y6Z7 Phage transcriptional regulator, AlpA n=6 Tax=Proteobacteria RepID=Q2Y6Z7_NITMU Length = 83 Score = 62.9 bits (152), Expect = 3e-09, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 6/60 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRCK 68 ILRLPAV ++G +R+TIY + +PK LG +SVGW +E+ + R Sbjct: 5 ILRLPAVKAESGASRSTIYLRIQ------QGLWPKPVRLGPRSVGWPASEVAAINAARIA 58 >UniRef50_C0DTI2 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DTI2_EIKCO Length = 137 Score = 62.5 bits (151), Expect = 4e-09, Method: Composition-based stats. Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 4 RSAVRILRLPAVIQKTGMARATIYDWLNPKSP-RYDATFPKKRMLGVKSVGWIE 56 +R+LRLP V+ TG++RA IY NPK RYD FP++ L +V W Sbjct: 53 NITMRMLRLPDVMAITGLSRAAIYAKCNPKDKARYDPDFPQRVQLSANTVAWPW 106 >UniRef50_Q6AR72 Putative uncharacterized protein n=1 Tax=Desulfotalea psychrophila RepID=Q6AR72_DESPS Length = 90 Score = 62.5 bits (151), Expect = 4e-09, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 6/63 (9%) Query: 4 RSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 R +RLP V TG + A+IY + +S FPK + +G ++V W +I +L Sbjct: 24 NHPERRIRLPEVKTLTGYSTASIYAKMANQS------FPKAQKMGGRAVAWRLQDILAFL 77 Query: 64 SQR 66 R Sbjct: 78 EGR 80 >UniRef50_B1LN65 Transcriptional regulator, AlpA family n=8 Tax=Escherichia RepID=B1LN65_ECOSM Length = 74 Score = 62.5 bits (151), Expect = 4e-09, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 6/61 (9%) Query: 6 AVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 R++R + TG++R T Y+ FP +R LG +SVGW+ +E+ +W+ Sbjct: 11 TDRVIREDECRKLTGVSRTTRYELEKK------GGFPSRRNLGGRSVGWLLSEVMDWVQS 64 Query: 66 R 66 R Sbjct: 65 R 65 >UniRef50_A1Z2Q5 Putative uncharacterized protein n=10 Tax=Enterobacteriaceae RepID=A1Z2Q5_ECOLX Length = 62 Score = 62.5 bits (151), Expect = 4e-09, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 6/61 (9%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 S R +R + TG++R Y FP +R LG +SVGW +E+ W Sbjct: 3 STDRFIREKECEKLTGLSRTCRYRLEKA------GQFPSRRKLGGRSVGWSLSEVLAWKD 56 Query: 65 Q 65 Sbjct: 57 S 57 >UniRef50_C6TZS2 Prophage CP4-57 regulatory protein (AlpA) n=1 Tax=Burkholderia pseudomallei 1710a RepID=C6TZS2_BURPS Length = 465 Score = 62.1 bits (150), Expect = 5e-09, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 33/63 (52%) Query: 3 NRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEW 62 A +L + V ++ ++ + +++ + P S YD FP K L ++V + +A++D W Sbjct: 251 ATPAGPLLDIKQVSERVNISVSMLHEKMKPTSKYYDPKFPPKIQLTERTVRYSQADVDAW 310 Query: 63 LSQ 65 + Sbjct: 311 IQA 313 >UniRef50_Q2T3P9 Prophage regulatory protein AlpA family protein n=3 Tax=pseudomallei group RepID=Q2T3P9_BURTA Length = 72 Score = 62.1 bits (150), Expect = 5e-09, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 35/61 (57%), Gaps = 6/61 (9%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 RI+R+PA++++ G++ + + + TFP+ LG +++G++ A++D WL Sbjct: 11 QPRRIVRMPALLERVGLSESEVRRRIKA------GTFPRPVKLGPRAIGFVVADVDAWLE 64 Query: 65 Q 65 Sbjct: 65 A 65 >UniRef50_Q21UK9 Phage transcriptional regulator, AlpA n=2 Tax=Proteobacteria RepID=Q21UK9_RHOFD Length = 121 Score = 62.1 bits (150), Expect = 5e-09, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 7/63 (11%) Query: 7 VRILRLPAVIQKTG-MARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 + ILRL AV+ +TG + A+IY S + TF +G +SVGW E+ + Sbjct: 1 MSILRLRAVLAETGHRSHASIY------SAVHAGTFTMPVQIGERSVGWPSDEVQAINAA 54 Query: 66 RCK 68 R Sbjct: 55 RIA 57 >UniRef50_A6Q4M7 Transcriptional regulator n=1 Tax=Nitratiruptor sp. SB155-2 RepID=A6Q4M7_NITSB Length = 64 Score = 62.1 bits (150), Expect = 6e-09, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 6/62 (9%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 R++ + V GM + TIY ++ D FPK +G+++ W E+ +W+ Sbjct: 7 QQDRLIDIKEVSSLIGMKKPTIYKYIR------DGKFPKPIKIGIRASRWSFNEVMQWIE 60 Query: 65 QR 66 +R Sbjct: 61 ER 62 >UniRef50_B6R1G6 Putative regulatory protein encoded in prophage CP-933I n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R1G6_9RHOB Length = 66 Score = 61.8 bits (149), Expect = 7e-09, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 R L P V G++R+TIY L+ + FP L +SV W +EI W + Sbjct: 6 DRYLARPEVEAVLGLSRSTIYKLLS------EDDFPPPTRLIGRSVRWRLSEIMSWAENK 59 Query: 67 CK 68 K Sbjct: 60 RK 61 >UniRef50_C1DSG1 Prophage CP4-57 regulatory , AlpA-like protein n=1 Tax=Azotobacter vinelandii DJ RepID=C1DSG1_AZOVD Length = 77 Score = 61.8 bits (149), Expect = 7e-09, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 10/72 (13%) Query: 2 NNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVK-----SVGWIE 56 N + + ++R+ V + TG+AR TIY ++ D TFP+ L V ++ Sbjct: 5 GNGAPLALVRMREVQEMTGLARPTIYKTISR-----DPTFPRPVKLSDSPARNAPVAFVL 59 Query: 57 AEIDEWLSQRCK 68 +E+ EW+++R K Sbjct: 60 SEVQEWINRRIK 71 >UniRef50_C4KAH0 Phage transcriptional regulator, AlpA n=1 Tax=Thauera sp. MZ1T RepID=C4KAH0_THASP Length = 109 Score = 61.4 bits (148), Expect = 8e-09, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 5/57 (8%) Query: 10 LRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 LR+ V G AT++ D TFPK L + W +EI+ W+ R Sbjct: 50 LRVKGVAAFLGCGVATVWRRTK-----DDPTFPKPIKLSERVTVWKLSEIEAWVDSR 101 >UniRef50_D0Z915 Putative uncharacterized protein n=1 Tax=Edwardsiella tarda EIB202 RepID=D0Z915_EDWTE Length = 64 Score = 61.0 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 9/64 (14%) Query: 6 AVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLG---VKSVGWIEAEIDEW 62 RILR V+Q+ G++ A++Y + FP L ++VGW+ ++ID W Sbjct: 3 QERILRKKEVLQRIGISNASLYRLIAK------GLFPTGIKLTGQEGRAVGWLSSDIDNW 56 Query: 63 LSQR 66 +S R Sbjct: 57 ISNR 60 >UniRef50_D0J4J3 Phage transcriptional regulator, AlpA n=1 Tax=Comamonas testosteroni CNB-2 RepID=D0J4J3_COMTE Length = 55 Score = 61.0 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 32/46 (69%) Query: 20 GMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 G++R+T+Y LNPK+ YD +FPK LG+K+VGW ++ ++ + Sbjct: 2 GLSRSTVYLRLNPKTKYYDPSFPKPIQLGMKAVGWKLEDVYSYIEK 47 >UniRef50_B1Y1X4 Phage transcriptional regulator, AlpA n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y1X4_LEPCP Length = 75 Score = 61.0 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 6/58 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 LR+ AV + TG+ R+TIY + +A FP L +++ W A++D W ++R Sbjct: 19 FLRIGAVTKLTGLGRSTIYRLMA------EAKFPTPVRLSSRAIAWRRADLDRWSAER 70 >UniRef50_A7MSH2 Putative uncharacterized protein n=1 Tax=Vibrio harveyi ATCC BAA-1116 RepID=A7MSH2_VIBHB Length = 81 Score = 61.0 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 6/60 (10%) Query: 4 RSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 ++I R V+ + ++AT++ ++N FP LG ++VG+ E+DE+L Sbjct: 2 NIEIKIERKNQVLSRVSFSKATLHRYINC------GKFPPPISLGGRAVGFFSHEVDEYL 55 >UniRef50_A0Q4W2 Regulatory protein, AlpA family n=3 Tax=Francisella RepID=A0Q4W2_FRATN Length = 72 Score = 60.6 bits (146), Expect = 1e-08, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 6/66 (9%) Query: 3 NRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEW 62 N R+LR V + GM++ +I+ FPK+ + ++ W+E+E+ EW Sbjct: 6 NNELPRLLRAEEVARCIGMSKNSIFRMARA------GKFPKQIRVSGQTTAWLESEVREW 59 Query: 63 LSQRCK 68 +++R K Sbjct: 60 IAKRVK 65 >UniRef50_A1TSI2 Phage transcriptional regulator, AlpA n=1 Tax=Acidovorax citrulli AAC00-1 RepID=A1TSI2_ACIAC Length = 117 Score = 60.6 bits (146), Expect = 1e-08, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 6/64 (9%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 R +R + Q +A TIY+ FP++ L + V W E++ W+ Sbjct: 36 PFRRTIRRHELHQIVPLAETTIYEM------EQRGEFPRRFRLTARCVVWDLEEVEAWIE 89 Query: 65 QRCK 68 R + Sbjct: 90 DRKQ 93 >UniRef50_D2LHF0 Phage transcriptional regulator, AlpA n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LHF0_RHOVA Length = 80 Score = 60.6 bits (146), Expect = 1e-08, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 6/61 (9%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRCK 68 +LR V + G + + +Y + FP+ LG K W E E++ + R Sbjct: 4 LLRRDDVRARLGCSVSNLYSQMAA------GMFPRPIKLGPKYSAWPEYEVEAIIKSRVA 57 Query: 69 L 69 L Sbjct: 58 L 58 >UniRef50_D2MIG9 Prophage CP4-57 regulatory n=2 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MIG9_9BACT Length = 81 Score = 60.6 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 6/61 (9%) Query: 6 AVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 +L V ++TG++R+T+Y + + TFP + ++V W + +I ++ Sbjct: 18 PDVLLTRREVERRTGLSRSTLYRKMR------NGTFPVPVKVSERAVRWRDRDIRAYVES 71 Query: 66 R 66 R Sbjct: 72 R 72 >UniRef50_A6B241 Conserved domain protein n=2 Tax=Vibrio parahaemolyticus RepID=A6B241_VIBPA Length = 79 Score = 60.6 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 6/60 (10%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 R +++ V+++T +RA IY + FP L V W E+E+D W+ +R Sbjct: 4 ERYMKIGEVLERTSYSRAQIYRLMKS------GEFPSSYRLSKNRVAWKESEVDAWVEER 57 >UniRef50_B5J7B4 Transcriptional regulator, AlpA family n=1 Tax=Octadecabacter antarcticus 307 RepID=B5J7B4_9RHOB Length = 62 Score = 60.6 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 6/62 (9%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 ++L+ V + TG +R TIY + + FP+ G SV W +++ +W+ Sbjct: 3 EQLLKRRVVEEMTGFSRTTIYRLMA------EGRFPRPLRTGENSVRWRMSDLQKWMDAL 56 Query: 67 CK 68 + Sbjct: 57 AE 58 >UniRef50_Q75SW7 Putative uncharacterized protein n=1 Tax=Escherichia coli RepID=Q75SW7_ECOLX Length = 74 Score = 60.6 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 12/71 (16%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRML------GVKSVGWIEAE 58 + +R++++ V++ +RAT+Y + FP+ L +SV W E E Sbjct: 2 TTLRLIKIKTVLEYCAFSRATLYRQIKA------GHFPEPVRLTGGVNASSRSVAWREEE 55 Query: 59 IDEWLSQRCKL 69 + W++ R K+ Sbjct: 56 VQLWITSRQKV 66 >UniRef50_D0M1L9 Predicted transcriptional regulator n=1 Tax=Vibrio sp. Ex25 RepID=D0M1L9_VIBSE Length = 96 Score = 60.2 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 6/59 (10%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 + ++I + V+++ G+++AT++ +N D TFP LG K+VG++ E+D +L Sbjct: 8 NQLKIEKKADVLKRVGLSQATLHRRIN------DGTFPPAVQLGPKAVGFMSHEVDAFL 60 >UniRef50_Q1LNC5 Phage transcriptional regulator, AlpA n=14 Tax=Proteobacteria RepID=Q1LNC5_RALME Length = 136 Score = 60.2 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 6/64 (9%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 R +R + Q +A TIY+ FP++ L + V W AE++ W+ Sbjct: 53 PFRRTIRRQELRQIVPLAETTIYEM------ERRGEFPRRFNLTPRCVVWDLAEVEAWVE 106 Query: 65 QRCK 68 +R + Sbjct: 107 ERKQ 110 >UniRef50_Q13ZB8 Phage transcriptional regulator, AlpA n=1 Tax=Burkholderia xenovorans LB400 RepID=Q13ZB8_BURXL Length = 103 Score = 60.2 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 33/58 (56%), Gaps = 6/58 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 R++R+P ++Q + R TIY+ + + P+ L ++ GW+ +EI+E +++ Sbjct: 44 RVIRMPDLLQMYPVGRTTIYELIKMQKL------PRPIALSKRARGWVLSEIEECIAK 95 >UniRef50_Q1QLR6 Phage transcriptional regulator, AlpA n=1 Tax=Nitrobacter hamburgensis X14 RepID=Q1QLR6_NITHX Length = 68 Score = 59.8 bits (144), Expect = 3e-08, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 6/57 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 +L+L V + TG+ R+TIY ++ TFP L V W + W Sbjct: 3 LLKLTDVTKATGLGRSTIYRKISEN------TFPPPLQLSPGCVRWDADHLQAWRDA 53 >UniRef50_B2PZ48 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae RepID=B2PZ48_PROST Length = 71 Score = 59.8 bits (144), Expect = 3e-08, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 7/61 (11%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRML-GVKSVGWIEAEIDEWLSQ 65 +++++ V+++ ++RAT+Y ++ K FP + + G +SV W E EI +W++ Sbjct: 13 RKLIKIHEVLRRCAISRATLYRLISKKC------FPNQVSVTGSRSVAWREDEIQKWIND 66 Query: 66 R 66 R Sbjct: 67 R 67 >UniRef50_C6DZ79 Phage transcriptional regulator, AlpA n=1 Tax=Geobacter sp. M21 RepID=C6DZ79_GEOSM Length = 73 Score = 59.8 bits (144), Expect = 3e-08, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 6/60 (10%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 +++R ++ G++R T + FP + LG SVGW E++EW+ R Sbjct: 4 DKLIRRKQMLALIGLSRTTQWRLEKA------GRFPTRVRLGPGSVGWHLTEVEEWVRGR 57 >UniRef50_UPI00019078FB hypothetical protein RetlG_16275 n=1 Tax=Rhizobium etli GR56 RepID=UPI00019078FB Length = 61 Score = 59.4 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 7/64 (10%) Query: 4 RSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 + R +RL V + G+ + IY + FPK LG S W ++ W+ Sbjct: 2 TATDRFIRLADVQEMIGLKDSRIYQMIKA------GEFPKPIKLGA-SSRWSLRAVEAWM 54 Query: 64 SQRC 67 S+R Sbjct: 55 SERA 58 >UniRef50_C5CKX5 Phage transcriptional regulator, AlpA n=1 Tax=Variovorax paradoxus S110 RepID=C5CKX5_VARPS Length = 90 Score = 59.4 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 6/65 (9%) Query: 1 MNNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEID 60 +++ + R+ VI+ T ++RAT+Y FP + LG + GW + Sbjct: 14 LSSATGPAFFRMADVIRITALSRATLYRRTAG------CKFPPQVHLGGHACGWPRGALQ 67 Query: 61 EWLSQ 65 +W+ Sbjct: 68 QWIDD 72 >UniRef50_Q1NGR7 Putative uncharacterized protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NGR7_9SPHN Length = 65 Score = 59.4 bits (143), Expect = 4e-08, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 6/63 (9%) Query: 3 NRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEW 62 + S + LRL AVI KTG +A+IY + + TFP +G ++V W + I W Sbjct: 2 DESKEQFLRLRAVIAKTGKPKASIYRDI------HLGTFPAPEKIGARAVAWRLSRILRW 55 Query: 63 LSQ 65 + Sbjct: 56 MQA 58 >UniRef50_C8X398 Phage transcriptional regulator, AlpA n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X398_DESRD Length = 74 Score = 59.1 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 6/61 (9%) Query: 4 RSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 ++ ++LRL V+ + + R + ++ + FP+ LG ++ W E +ID ++ Sbjct: 3 KTGNKLLRLKDVLDRVPVGRTSWWNGVKK------GIFPQPIKLGPRTTCWREEDIDAFI 56 Query: 64 S 64 Sbjct: 57 E 57 >UniRef50_B0RUQ9 Hypothetical 9.7 kDa protein n=1 Tax=Xanthomonas campestris pv. campestris str. B100 RepID=B0RUQ9_XANCB Length = 94 Score = 59.1 bits (142), Expect = 5e-08, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 6/56 (10%) Query: 11 RLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 RLP+V+ + G +RA++Y + FP +G +++GW +D W+++R Sbjct: 36 RLPSVLARVGRSRASLYRDIAA------GQFPSPVKIGERAIGWDPRVVDNWIAER 85 >UniRef50_Q3SQP6 Prophage CP4-57 regulatory n=4 Tax=Alphaproteobacteria RepID=Q3SQP6_NITWN Length = 98 Score = 58.7 bits (141), Expect = 5e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 6/65 (9%) Query: 2 NNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDE 61 N R +R + + +A +TIY+ FP++ L + V W AE++ Sbjct: 5 NGAPIKRTIRRHQLREMVPLADSTIYEM------EQRGEFPRRFALSPRCVVWDLAEVEA 58 Query: 62 WLSQR 66 WL+ R Sbjct: 59 WLAAR 63 >UniRef50_B5F477 Conserved domain protein n=2 Tax=Salmonella enterica subsp. enterica RepID=B5F477_SALA4 Length = 76 Score = 58.7 bits (141), Expect = 5e-08, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 33/59 (55%), Gaps = 6/59 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 ++ V+++ ++A +Y L+ TFP+ +G +++ ++E+E+D W+ ++ Sbjct: 13 LISAKEVLRRVQRSKAWLYKQLSNN------TFPRPVKIGTRAISFVESEVDHWIQEQI 65 >UniRef50_A4XZH5 Phage transcriptional regulator, AlpA n=3 Tax=Pseudomonas RepID=A4XZH5_PSEMY Length = 78 Score = 58.7 bits (141), Expect = 6e-08, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 7/63 (11%) Query: 4 RSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 + +L+LP V ++ G + IY + + TFP+ +G + W + E+ W+ Sbjct: 16 KPVDVLLQLPEVCRQAGFGKTAIYRMMK------EGTFPEPIKIGP-ASRWSQIEVQAWI 68 Query: 64 SQR 66 ++ Sbjct: 69 EKQ 71 >UniRef50_A1W718 Phage transcriptional regulator, AlpA n=1 Tax=Acidovorax sp. JS42 RepID=A1W718_ACISJ Length = 143 Score = 58.3 bits (140), Expect = 7e-08, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 6/57 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 R+ V++ T ++ AT+Y L D FP LG ++ GW + W+ Sbjct: 33 FFRIAEVMRITVLSSATVYRRLA------DGIFPPPVHLGGRACGWTPVALQAWIEN 83 >UniRef50_Q47DU8 Prophage CP4-57 regulatory n=2 Tax=Dechloromonas aromatica RCB RepID=Q47DU8_DECAR Length = 91 Score = 58.3 bits (140), Expect = 8e-08, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 29/60 (48%), Gaps = 6/60 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRCK 68 LR P V+ ++++T++ + + TFP+ L + W +I W++Q+ + Sbjct: 36 FLRQPQVLAFVPISKSTLWRRIQAR------TFPEPVKLSERVTVWRAEDIRRWIAQQGQ 89 >UniRef50_A7HPY0 Phage transcriptional regulator, AlpA n=2 Tax=Alphaproteobacteria RepID=A7HPY0_PARL1 Length = 75 Score = 58.3 bits (140), Expect = 8e-08, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 4/67 (5%) Query: 3 NRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEW 62 + +++ + G+ Y + FPK+ LG V W+ +E++ W Sbjct: 2 AQYQKQVVSKKELKTVCGIP----YSGQHIARLEAAGAFPKRIRLGQNRVVWLLSEVEAW 57 Query: 63 LSQRCKL 69 L R L Sbjct: 58 LDARIAL 64 >UniRef50_Q8DF51 Predicted phage-specific transcriptional regulator n=1 Tax=Vibrio vulnificus RepID=Q8DF51_VIBVU Length = 86 Score = 57.9 bits (139), Expect = 9e-08, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 31/61 (50%), Gaps = 6/61 (9%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 ++ + L VI+ + + IYD + FP + +G ++ +I++E++ +L+ + Sbjct: 4 LQFMSLKEVIELVTLKKTAIYDKIKK------GEFPPQIRMGGNTIVFIKSELEFYLASK 57 Query: 67 C 67 Sbjct: 58 I 58 >UniRef50_A1W8X8 Phage transcriptional regulator, AlpA n=26 Tax=Proteobacteria RepID=A1W8X8_ACISJ Length = 81 Score = 57.9 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 6/66 (9%) Query: 1 MNNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEID 60 M ++ ++ ++ ++ TI++ FP++ L ++V W AE++ Sbjct: 1 MQATTSKTLINRKKLLAMIPLSERTIFNM------EQRGEFPRRIALTSRNVAWDLAEVE 54 Query: 61 EWLSQR 66 EW+ R Sbjct: 55 EWIEAR 60 >UniRef50_A1VSK2 Phage transcriptional regulator, AlpA n=1 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VSK2_POLNA Length = 74 Score = 57.5 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 6/58 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 I R V++K G++ T+ W+ + FP+ + LG ++VGW+ ++ WL +R Sbjct: 11 IYRKKVVLEKFGISETTLRRWMQDEG------FPRPKQLGPRAVGWVVDQVGAWLEKR 62 >UniRef50_B0UVF0 Phage transcriptional regulator, AlpA n=4 Tax=Pasteurellaceae RepID=B0UVF0_HAES2 Length = 73 Score = 57.5 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 7/60 (11%) Query: 6 AVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 +++ + V TG + TIY +N FPK + G +S W A+I+ +++ Sbjct: 21 QKKLINIEDVKAITGFSTTTIYKLMNK------GEFPKAKKCG-RSTRWRLADIESYIAS 73 >UniRef50_Q21H24 Phage transcriptional regulator, AlpA n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21H24_SACD2 Length = 92 Score = 57.5 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 6/62 (9%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 S ++I+R AV+ + G ++ + D + P LG ++VGW++ EI+ ++ Sbjct: 4 STLKIIRREAVLNRFGRSKTWLADQVTS------GLVPPPISLGGRAVGWLDHEINAVIA 57 Query: 65 QR 66 R Sbjct: 58 AR 59 >UniRef50_B9MGX1 Phage transcriptional regulator, AlpA n=1 Tax=Diaphorobacter sp. TPSY RepID=B9MGX1_DIAST Length = 72 Score = 57.1 bits (137), Expect = 1e-07, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 6/65 (9%) Query: 1 MNNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEID 60 M + ++RLPAV+Q ++R+ Y+ + +P LG ++V W ++I+ Sbjct: 2 MTTTTTDVLMRLPAVLQVFPVSRSGWYEGVRT------GRYPAPVKLGARAVAWRRSDIE 55 Query: 61 EWLSQ 65 ++ Sbjct: 56 RLVAN 60 >UniRef50_B8K6F3 Transcriptional regulator, AlpA family n=2 Tax=Gammaproteobacteria RepID=B8K6F3_VIBPA Length = 73 Score = 57.1 bits (137), Expect = 1e-07, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 6/63 (9%) Query: 4 RSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 + R++R T ++R+ + FPK+R LG +SV W+ +EI EW+ Sbjct: 14 KPTDRLIREEERRALTSISRSQAWVL------EQKGQFPKRRKLGNRSVAWVLSEIMEWI 67 Query: 64 SQR 66 R Sbjct: 68 ETR 70 >UniRef50_Q1YTR0 Putative uncharacterized protein n=2 Tax=gamma proteobacterium HTCC2207 RepID=Q1YTR0_9GAMM Length = 73 Score = 56.7 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Query: 2 NNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRML--GVKSVGWIEAEI 59 + R+LR V + +R+ +YD +N FP+ + + G ++VGW ++I Sbjct: 3 DINEIPRLLRWKEVAKIIPFSRSYVYDLIN------QGKFPRGQKMVRGGQAVGWWASDI 56 Query: 60 DEWLSQRCK 68 ++++ + Sbjct: 57 NDYMLALME 65 >UniRef50_D0W4G6 Conserved domain protein n=1 Tax=Neisseria cinerea ATCC 14685 RepID=D0W4G6_NEICI Length = 147 Score = 56.7 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 29/57 (50%) Query: 10 LRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 L L ++ TG+ R + ++ P YD+ FP +G ++ W A+++ W S R Sbjct: 5 LNLKELMSLTGLKRGMVERLMHKNDPAYDSAFPAPVPVGRNALRWRRADVERWQSGR 61 >UniRef50_B2JD58 Phage transcriptional regulator, AlpA n=1 Tax=Burkholderia phymatum STM815 RepID=B2JD58_BURP8 Length = 75 Score = 56.7 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 34/68 (50%), Gaps = 6/68 (8%) Query: 1 MNNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEID 60 M +++ ++ + + G+ R+ Y ++ D TFPK +G +V W+E+E+ Sbjct: 1 MADKTIPVLIPRRRMSELCGLQRSATYQRVS------DGTFPKPVTIGSAAVRWVESEVI 54 Query: 61 EWLSQRCK 68 W+ ++ Sbjct: 55 SWVQRQID 62 >UniRef50_Q0TV65 Phage AlpA family protein n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q0TV65_THICR Length = 64 Score = 56.7 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 7/68 (10%) Query: 1 MNNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEID 60 M ++ ++L LP V G+ ++ IY + FPK R++ K++ W+ +EI Sbjct: 1 MIDKVPEQLLPLPKVEMMIGLKKSKIYALIKT------GEFPKNRVIKGKAL-WLSSEIQ 53 Query: 61 EWLSQRCK 68 W+S++ + Sbjct: 54 NWISEQWQ 61 >UniRef50_A6VCA3 Transcriptional regulator, AlpA family n=2 Tax=Pseudomonas RepID=A6VCA3_PSEA7 Length = 70 Score = 56.7 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 4/60 (6%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 ++ILR AV +K G I D + R D TFP + + VGW+E EID WL Q+ Sbjct: 1 MQILRRKAVCEKLG----GINDVTLWRITRDDPTFPASIQINKRVVGWLEHEIDAWLGQK 56 >UniRef50_Q0F0R8 Putative uncharacterized protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F0R8_9PROT Length = 60 Score = 56.7 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 6/62 (9%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 ++ +R + ++ ++R I+ FPK+ L +VGW AEIDEWL QR Sbjct: 1 MQTIRFAQLQKRVPLSRTQIWRL------ERQGLFPKRIQLSANTVGWDAAEIDEWLQQR 54 Query: 67 CK 68 + Sbjct: 55 KE 56 >UniRef50_A7ZI04 Prophage CP4-57 regulatory protein n=1 Tax=Escherichia coli E24377A RepID=A7ZI04_ECO24 Length = 72 Score = 56.4 bits (135), Expect = 2e-07, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 36/60 (60%), Gaps = 6/60 (10%) Query: 6 AVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 R++R+ +I+ ++R T++ W+N + FP+ R + +++GW ++ +EWLS+ Sbjct: 17 PQRLIRINHMIELLAVSRTTLWRWVN------EGVFPEPRKIQGRTLGWTASQYEEWLSK 70 >UniRef50_B8L8F8 Transcriptional regulator, AlpA family n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L8F8_9GAMM Length = 84 Score = 56.4 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 7/63 (11%) Query: 4 RSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 +L+L V +TGM ++ IY ++ TFP K +G W +++I W+ Sbjct: 6 NIPEVLLKLEQVEAQTGMKKSYIYREMD------RGTFPPKHKVGGG-TRWYQSDIQRWI 58 Query: 64 SQR 66 R Sbjct: 59 RAR 61 >UniRef50_C0VI45 Putative uncharacterized protein n=1 Tax=Acinetobacter sp. ATCC 27244 RepID=C0VI45_9GAMM Length = 64 Score = 56.4 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 31/44 (70%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKS 51 +++ + VI+ TG++R+TIY+ ++ SP YD TFPKK + K+ Sbjct: 13 QLISIKKVIEFTGVSRSTIYEAMDENSPYYDPTFPKKITISQKT 56 >UniRef50_D2UDR2 Putative regulatory protein, alpa family n=1 Tax=Xanthomonas albilineans RepID=D2UDR2_XANAL Length = 86 Score = 56.4 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 6/66 (9%) Query: 1 MNNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEID 60 M + ++ ++ ++ TI++ FP++ L ++V W AE++ Sbjct: 1 MQTTTNKTLINRKKLLAMIPLSERTIFNM------EQREEFPRRIALTSRNVAWDLAEVE 54 Query: 61 EWLSQR 66 EW+ R Sbjct: 55 EWIEAR 60 >UniRef50_C5V761 Phage transcriptional regulator, AlpA n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V761_9PROT Length = 57 Score = 56.0 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 6/55 (10%) Query: 11 RLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 + V+ ++++T+Y + D FP+ + K VGW++A+ID +++ Sbjct: 4 NIHQVVAAVTLSKSTVYRLIK------DGKFPQPVRISYKRVGWLKADIDSFVAS 52 >UniRef50_C5BER2 Phage transcriptional regulator, AlpA n=1 Tax=Edwardsiella ictaluri 93-146 RepID=C5BER2_EDWI9 Length = 84 Score = 56.0 bits (134), Expect = 4e-07, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 6/59 (10%) Query: 10 LRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRCK 68 +R ++Q ++ +TIY FPK+ L ++V W + E++ WL + K Sbjct: 5 IRKNVLLQMVPLSESTIYAL------EQKGLFPKRFALTKRAVAWDKEEVENWLKTQQK 57 >UniRef50_B0KSV2 Phage transcriptional regulator, AlpA n=1 Tax=Pseudomonas putida GB-1 RepID=B0KSV2_PSEPG Length = 55 Score = 56.0 bits (134), Expect = 4e-07, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 7/58 (12%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 +L V ++ G + +Y + + FPK R +G +S W+E+E+D+W+ + Sbjct: 5 LLDRKEVCKRIGFSHTFVYKEMR------EGRFPKHRKIGNRS-RWLESEVDDWIRSQ 55 >UniRef50_Q63RT8 Putative uncharacterized protein n=1 Tax=Burkholderia pseudomallei RepID=Q63RT8_BURPS Length = 69 Score = 55.6 bits (133), Expect = 4e-07, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 5/67 (7%) Query: 2 NNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDE 61 + R LR V QK G+ A+++ + D FP+ L ++ + E+EID Sbjct: 3 DLNLQDRYLRPAGVAQKLGVCVASVWARVKS-----DPAFPRPIKLSARTTVFAESEIDA 57 Query: 62 WLSQRCK 68 ++ QR Sbjct: 58 YVRQRAA 64 >UniRef50_A7FES1 AlpA family protein n=29 Tax=Enterobacteriaceae RepID=A7FES1_YERP3 Length = 69 Score = 55.6 bits (133), Expect = 5e-07, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 10/71 (14%) Query: 1 MNNRSA---VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEA 57 MN + ++ + + +GM+ Y ++ D TFPK LG +S W+ + Sbjct: 1 MNINPSLLEDSLVDMTFITTYSGMSDKWFYKLIS------DGTFPKPIKLG-RSSRWLHS 53 Query: 58 EIDEWLSQRCK 68 E+ WL R + Sbjct: 54 EVQAWLQARIE 64 >UniRef50_Q7U5P1 Possible transcription regulator n=2 Tax=Synechococcus sp. WH 8102 RepID=Q7U5P1_SYNPX Length = 47 Score = 55.6 bits (133), Expect = 5e-07, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 6/49 (12%) Query: 18 KTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 TG++ +TIY W+ D TFPK+ LG + W E ++ +W++ + Sbjct: 1 MTGLSISTIYRWM------TDGTFPKQIQLGSRYDVWNERDVIDWMNAQ 43 >UniRef50_B5N8F3 Conserved domain protein n=1 Tax=Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433 RepID=B5N8F3_SALET Length = 62 Score = 55.2 bits (132), Expect = 6e-07, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 30/54 (55%), Gaps = 6/54 (11%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEW 62 ++ + V + G+ +++IY+ ++ FPK + LG ++ W+ E++EW Sbjct: 10 LINIKEVERSVGLKKSSIYERISNN------EFPKPKKLGSRTSRWVRGEVEEW 57 >UniRef50_B2JS19 Phage transcriptional regulator, AlpA n=1 Tax=Burkholderia phymatum STM815 RepID=B2JS19_BURP8 Length = 96 Score = 55.2 bits (132), Expect = 7e-07, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 7/65 (10%) Query: 3 NRSAVRI-LRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDE 61 + A++I L L V Q ++++T+ + K FP+ R+L + VGW+ E+ Sbjct: 22 GKVAMKICLSLKEVAQALSLSQSTVQQLVREK------RFPEPRLLSGRRVGWLTHEVQN 75 Query: 62 WLSQR 66 W + R Sbjct: 76 WANAR 80 >UniRef50_B8KK13 Transcriptional regulator, AlpA family n=3 Tax=Gammaproteobacteria RepID=B8KK13_9GAMM Length = 82 Score = 54.8 bits (131), Expect = 8e-07, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 8/56 (14%) Query: 15 VIQKTGMARATIYDWLNPKSPRYDATFPKKRML--GVKSVGWIEAEIDEWLSQRCK 68 V TG++R+ IY FPK L G S W+E+E+ +WL QR Sbjct: 24 VQDLTGLSRSYIYAL------AAQGRFPKSVALVPGGTSRAWVESEVFDWLEQRIA 73 >UniRef50_C7I2T3 Phage transcriptional regulator, AlpA n=1 Tax=Thiomonas intermedia K12 RepID=C7I2T3_THIIN Length = 72 Score = 54.8 bits (131), Expect = 8e-07, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 6/56 (10%) Query: 11 RLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 RLP +++ G+ R+T+Y W+ FP +G + W AE++E+L +R Sbjct: 10 RLPFLLETFGLKRSTVYFWIRK------GNFPPPYKVGDRCSLWDIAEVEEYLRRR 59 >UniRef50_A2CBA2 Predicted transcriptional regulator n=3 Tax=Prochlorococcus marinus RepID=A2CBA2_PROM3 Length = 65 Score = 54.8 bits (131), Expect = 8e-07, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 28/51 (54%), Gaps = 6/51 (11%) Query: 18 KTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRCK 68 T ++++TIY + K FP++ +G + V W + + +W++Q+ + Sbjct: 1 MTSLSKSTIYKMIAEK------KFPRQIQIGPQQVVWTKHAVQDWMNQKIQ 45 >UniRef50_D2TST7 Puative transcriptional regulator n=77 Tax=Enterobacteriaceae RepID=D2TST7_CITRO Length = 68 Score = 54.8 bits (131), Expect = 9e-07, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 10/71 (14%) Query: 1 MNNRSA---VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEA 57 MN + +++ + + Q TG+ Y + D FP LG +S W+++ Sbjct: 1 MNTPVSLMDDQMVDMAFITQLTGLTDKWFYKLIK------DGAFPAPIKLG-RSSRWLKS 53 Query: 58 EIDEWLSQRCK 68 E++ WL R Sbjct: 54 EVEAWLQARIA 64 >UniRef50_D0FM12 Prophage CP4-57 regulatory protein n=2 Tax=Aggregatibacter RepID=D0FM12_AGGAN Length = 61 Score = 54.4 bits (130), Expect = 9e-07, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 6/59 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 +L V++ T ++ TI+ + FP + V W + +ID+W+++R Sbjct: 7 LLSKAKVVEITSLSYTTIWRMIRK------GEFPNSVKASMGRVAWRKQDIDDWIAKRI 59 >UniRef50_Q0HSR4 Phage transcriptional regulator, AlpA n=1 Tax=Shewanella sp. MR-7 RepID=Q0HSR4_SHESR Length = 87 Score = 54.4 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 6/58 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 RI+R G++ +T+++ +N P L ++VGW E EI L+ Sbjct: 6 RIVRKHEAKTMLGISHSTLHERINA------GLIPPPFRLSGRAVGWYEYEIQYILAA 57 >UniRef50_C6E2B8 Phage transcriptional regulator, AlpA n=1 Tax=Geobacter sp. M21 RepID=C6E2B8_GEOSM Length = 57 Score = 54.1 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 6/55 (10%) Query: 11 RLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 R+ V + +++ TI W+ + FPK L + W E+ ++ Q Sbjct: 6 RMKQVQEHVPVSKTTILTWVR------EGKFPKPIKLSGRCTVWDLEEVINFIEQ 54 >UniRef50_A3WKQ1 DNA-binding protein, putative n=1 Tax=Idiomarina baltica OS145 RepID=A3WKQ1_9GAMM Length = 76 Score = 54.1 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 6/62 (9%) Query: 4 RSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 + R++R TG+AR ++ FPK+ LG +SV W +++++W+ Sbjct: 14 KPKDRLVRERECRAITGLARQRRWELEK------QGKFPKRVHLGTRSVAWRLSDLEKWI 67 Query: 64 SQ 65 + Sbjct: 68 DE 69 >UniRef50_Q74H30 Putative uncharacterized protein n=1 Tax=Geobacter sulfurreducens RepID=Q74H30_GEOSL Length = 73 Score = 54.1 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 6/59 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 R++RL V+ G + AT++ W FP++R +G+++V W E++EW R Sbjct: 3 RMIRLAEVLSVAGCSEATLWRWERA------GLFPRRRRIGLRAVAWDSEEVEEWRRTR 55 >UniRef50_B2U4Z1 Prophage CP4-57 regulatory protein (AlpA) n=2 Tax=Enterobacteriaceae RepID=B2U4Z1_SHIB3 Length = 85 Score = 54.1 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 6/58 (10%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 R +R I T +A +T + FP++ +G ++ G+ +E+ W+ Sbjct: 19 DRFIREKECIALTTLANSTRWKM------EQAGKFPRRIKIGERAAGYRLSEVQAWIR 70 >UniRef50_C6XEE2 Phage transcriptional regulator, AlpA n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6XEE2_METSD Length = 82 Score = 53.7 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 10/62 (16%) Query: 4 RSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 ++ R++ L V + G R+TIY+ + K TFP G+ W+E+EID+++ Sbjct: 12 QNKDRLIGLAEVSNRVGKGRSTIYERIKNK------TFPAPVEPGL----WLESEIDQYI 61 Query: 64 SQ 65 Sbjct: 62 DD 63 >UniRef50_A4SRW4 Putative uncharacterized protein n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449 RepID=A4SRW4_AERS4 Length = 84 Score = 53.3 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 6/60 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRCK 68 +R+ + + G+A T++ W TFPK L + W E+ W++ + K Sbjct: 29 FVRVDTLAKVLGIAVVTVWRW------SAKGTFPKPVKLSERVTAWRAEEVRSWMNAQGK 82 >UniRef50_B0T8K3 Phage transcriptional regulator, AlpA n=6 Tax=Alphaproteobacteria RepID=B0T8K3_CAUSK Length = 99 Score = 53.3 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 6/62 (9%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 +R +R + + +A TIY+ FP++ L + V W AE++ WL+ Sbjct: 16 PPLRAIRRAQLHKIVPLADTTIYEM------ERRGEFPRRFALTRRCVVWDLAEVETWLA 69 Query: 65 QR 66 +R Sbjct: 70 ER 71 >UniRef50_Q98MP9 Mll0486 protein n=1 Tax=Mesorhizobium loti RepID=Q98MP9_RHILO Length = 76 Score = 53.3 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 34/62 (54%), Gaps = 5/62 (8%) Query: 4 RSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 + +L +P V G++R T+ ++ + +FP+K+ +G + VG++ ++I+ ++ Sbjct: 16 NQSAIVLSIPQVCATLGISRPTLDRYIK-----DNPSFPRKKKIGPRLVGFLRSDIETYI 70 Query: 64 SQ 65 Sbjct: 71 GS 72 >UniRef50_Q0C1G9 Prophage CP4-57 regulatory protein AlpA family protein n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C1G9_HYPNA Length = 61 Score = 53.3 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 5/59 (8%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 +R L L V+ + ++R+ +Y+ + FP +G +SV W+E E++ ++ Sbjct: 1 MRFLSLRDVLDRLTISRSLLYELIKDPVQP----FPAPIHIGRRSV-WVENEVESYMRA 54 >UniRef50_Q89JN8 Blr5245 protein n=1 Tax=Bradyrhizobium japonicum RepID=Q89JN8_BRAJA Length = 118 Score = 52.9 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 6/60 (10%) Query: 6 AVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 R+L V++ + R T+Y FPK + W E EI W + Sbjct: 42 PRRMLNEKQVLEIIPVGRTTLYRMEKS------GRFPKSTYISPNRRVWFEDEIIAWQNA 95 >UniRef50_A1K761 Putative uncharacterized protein n=1 Tax=Azoarcus sp. BH72 RepID=A1K761_AZOSB Length = 89 Score = 52.9 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 6/58 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 L LPAV + ++ +T+ + + FP R + VGW+ E++EW R Sbjct: 13 FLDLPAVAEVVALSESTVQELVRL------GQFPLPRQTSGRRVGWLVREVEEWAESR 64 >UniRef50_D2QCK8 Phage transcriptional regulator, AlpA n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QCK8_9SPHI Length = 72 Score = 52.9 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 24/57 (42%), Gaps = 6/57 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 +RL +++ ++R+T + FP+ L + W ++I + ++ Sbjct: 14 FIRLNQILKIIPVSRSTWWHGCKT------GRFPQPYKLSPRVTAWKASDIQDCMAN 64 >UniRef50_A5F3R9 Phage transcriptional regulator, AlpA n=5 Tax=Vibrio cholerae RepID=A5F3R9_VIBC3 Length = 77 Score = 52.9 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 6/61 (9%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 R +R + T ++R+ + + FP + LG +SV W +++ +WL ++ Sbjct: 16 DRFVREAERRRITAISRSQAWKLEK------EGRFPPRIKLGSRSVVWRLSDLTQWLDKQ 69 Query: 67 C 67 Sbjct: 70 A 70 >UniRef50_A6TCN1 Putative uncharacterized protein n=9 Tax=Enterobacteriaceae RepID=A6TCN1_KLEP7 Length = 71 Score = 52.9 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 6/60 (10%) Query: 10 LRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRCKL 69 +R+ V+Q M+ +++Y + FP+ L + V + AEI +W +R + Sbjct: 17 VRMRQVVQFLAMSESSVYRLIKNT------DFPRPVHLSSRLVVFDAAEIRQWQQRRTAI 70 >UniRef50_B6XJ47 Putative uncharacterized protein n=1 Tax=Providencia alcalifaciens DSM 30120 RepID=B6XJ47_9ENTR Length = 65 Score = 52.9 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 6/60 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRCK 68 +L + V + + ++TIY+ + K FP + +GV++ W+ EI+EW QR Sbjct: 11 LLTMKEVEKLVTLKKSTIYEMIKRK------EFPSQHKIGVRAARWLRREINEWKQQRTA 64 >UniRef50_UPI0001AF1863 hypothetical protein SghaA1_28044 n=1 Tax=Streptomyces ghanaensis ATCC 14672 RepID=UPI0001AF1863 Length = 301 Score = 52.5 bits (125), Expect = 4e-06, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 7/67 (10%) Query: 5 SAVRILRLP-------AVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEA 57 +R+LR+ + ++TG R + W+N + FP + +S W Sbjct: 68 PGLRLLRIDPDLVGVSDIAERTGRTRQNVQQWVNGERRAGKERFPAPEGVAGRSPVWRWG 127 Query: 58 EIDEWLS 64 +++ WL+ Sbjct: 128 DVNAWLA 134 >UniRef50_B3E9V0 Phage transcriptional regulator, AlpA n=1 Tax=Geobacter lovleyi SZ RepID=B3E9V0_GEOLS Length = 58 Score = 52.1 bits (124), Expect = 5e-06, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 6/59 (10%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 R++R+ + Q ++R+ I+D + FPK L K+ W + I L Sbjct: 3 DRLVRVKELAQILSVSRSKIWDDVAK------GKFPKPFKLSEKTTVWKMSAIQAHLES 55 >UniRef50_B4W815 Transcriptional regulator, AlpA family n=1 Tax=Brevundimonas sp. BAL3 RepID=B4W815_9CAUL Length = 140 Score = 52.1 bits (124), Expect = 5e-06, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 6/65 (9%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 R+L V G++R T + FP ++ V W E+E+ W Sbjct: 15 PEDRLLPWDRVQDMAGISRTTAWRMQRS------GAFPTPVVVSPGRVAWWESELTAWKG 68 Query: 65 QRCKL 69 R + Sbjct: 69 ARGDV 73 >UniRef50_A7JWN4 Possible bacteriophage transcriptional regulator n=1 Tax=Mannheimia haemolytica PHL213 RepID=A7JWN4_PASHA Length = 83 Score = 52.1 bits (124), Expect = 5e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 7/59 (11%) Query: 10 LRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRCK 68 L + V + + R+TIY + FPK +G KS W A+I +L + + Sbjct: 29 LNVKDVCEMLQLNRSTIYRQIK------QGIFPKPTKIG-KSSRWKFADIKAFLEPKPQ 80 >UniRef50_UPI00016A8C0B phage transcriptional regulator, AlpA n=1 Tax=Burkholderia pseudomallei DM98 RepID=UPI00016A8C0B Length = 72 Score = 52.1 bits (124), Expect = 5e-06, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 11/73 (15%) Query: 1 MNNRSAVRI---LRLPAVI--QKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWI 55 M N + + LR+ +I + ++ TI+ + + TFP L W Sbjct: 1 MGNTQTLGLDAYLRISQLISGRFVPFSKPTIWRKVR------EGTFPAPVKLSAGVTAWK 54 Query: 56 EAEIDEWLSQRCK 68 ++I EW + + Sbjct: 55 LSDIQEWQRAQLE 67 >UniRef50_B3GXK5 Putative uncharacterized protein n=2 Tax=Pasteurellaceae RepID=B3GXK5_ACTP7 Length = 67 Score = 51.4 bits (122), Expect = 9e-06, Method: Composition-based stats. Identities = 7/66 (10%), Positives = 21/66 (31%), Gaps = 6/66 (9%) Query: 4 RSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 + +++ G R + + FP+ + W E++ W+ Sbjct: 6 TQSKKLISGKETCAVVGCGRTKLNLLVKA------GKFPQPIRFSQNFIRWDLEEVEAWI 59 Query: 64 SQRCKL 69 ++ + Sbjct: 60 EEQKAM 65 >UniRef50_A1W680 Phage transcriptional regulator, AlpA n=2 Tax=Acidovorax RepID=A1W680_ACISJ Length = 79 Score = 51.4 bits (122), Expect = 9e-06, Method: Composition-based stats. Identities = 8/58 (13%), Positives = 24/58 (41%), Gaps = 6/58 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 +R ++ +++T++ + + FP L V W ++ W++++ Sbjct: 27 FVRQKLLLSFVPFSKSTLWRRVK------EGLFPAPIRLSVGITAWRAEDVRRWIAEQ 78 >UniRef50_Q2NDL4 Putative uncharacterized protein n=1 Tax=Erythrobacter litoralis HTCC2594 RepID=Q2NDL4_ERYLH Length = 64 Score = 51.4 bits (122), Expect = 9e-06, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 7/58 (12%) Query: 9 ILRLPAVIQKTGM-ARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 +L V++ TG+ +RATI+ + TFP +G + W AE++ W++ Sbjct: 6 LLSCQDVMRLTGIRSRATIWRRIKK------GTFPNPVDIGSGRIRWRVAEVENWIND 57 >UniRef50_Q0AAZ5 Phage transcriptional regulator, AlpA n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0AAZ5_ALHEH Length = 66 Score = 51.0 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 26/65 (40%), Gaps = 6/65 (9%) Query: 3 NRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEW 62 L L + ++ + ++T + W+ FPK L W +++++W Sbjct: 4 TAQQTTYLSLRQITERYNVHKSTAWRWVAA------GRFPKPVKLSPGCTRWKLSDLEQW 57 Query: 63 LSQRC 67 +++ Sbjct: 58 EAEQA 62 >UniRef50_B6JEJ7 Conserved domain protein n=1 Tax=Oligotropha carboxidovorans OM5 RepID=B6JEJ7_OLICO Length = 79 Score = 51.0 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 6/54 (11%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEW 62 ++ + +V+ T ++R I R D FP LG + V ++ EI++W Sbjct: 12 LVSMKSVVAMTSLSRTMINR------YRVDGKFPAAVPLGDRRVAFVRNEINDW 59 >UniRef50_A9BBH2 Predicted transcriptional regulator n=1 Tax=Prochlorococcus marinus str. MIT 9211 RepID=A9BBH2_PROM4 Length = 46 Score = 51.0 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 6/48 (12%) Query: 21 MARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRCK 68 M+R TIY+ + + TFPK+ +G V W+E ++ +W+ ++ Sbjct: 1 MSRGTIYNKI------HAGTFPKQIPIGANLVVWLERDVQQWMQEQVD 42 >UniRef50_B3IEH8 Transcriptional regulator, AlpA family n=2 Tax=Escherichia coli RepID=B3IEH8_ECOLX Length = 127 Score = 50.6 bits (120), Expect = 2e-05, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 29/62 (46%), Gaps = 6/62 (9%) Query: 4 RSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 R + R++ + V++ T ++R T+ + FP++ + W +E+ +W+ Sbjct: 32 RLSERLVDMNQVMELTTLSRRTLLNL------EARGEFPERVQVTEGRKAWYLSEVIDWI 85 Query: 64 SQ 65 + Sbjct: 86 NN 87 >UniRef50_A7FCS5 AlpA family protein n=8 Tax=Enterobacteriaceae RepID=A7FCS5_YERP3 Length = 72 Score = 50.6 bits (120), Expect = 2e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 6/57 (10%) Query: 10 LRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 +R + + G++ +TI + D + P+ LG K + EI+ WL+ + Sbjct: 17 IRRFRLAEMLGVSVSTIDRKVK------DGSLPRPIKLGEKITAFSAVEINSWLAAQ 67 >UniRef50_C6C8I1 Phage transcriptional regulator, AlpA n=11 Tax=Enterobacteriaceae RepID=C6C8I1_DICDC Length = 70 Score = 50.2 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 7/63 (11%) Query: 7 VRILRLPAVIQKTGMA-RATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 +IL V ++ ++ + +N FPK +G++ VGW E E++ WLSQ Sbjct: 6 RKILLKKEVKAILRVSSDSSFQEMINA------GEFPKGFRIGLRRVGWFEDEVNTWLSQ 59 Query: 66 RCK 68 R Sbjct: 60 RIA 62 >UniRef50_A3W5U3 Putative uncharacterized protein n=1 Tax=Roseovarius sp. 217 RepID=A3W5U3_9RHOB Length = 69 Score = 50.2 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 6/58 (10%) Query: 10 LRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 + + V ++ +++ TI+ W + + FP LG + W ++I+E+ SQ Sbjct: 1 MSVEQVAKRFSVSKDTIWRW------KRNGEFPAPVKLGGTTTRWRLSDIEEYESQLI 52 >UniRef50_C0VMY7 Putative uncharacterized protein n=1 Tax=Acinetobacter sp. ATCC 27244 RepID=C0VMY7_9GAMM Length = 95 Score = 50.2 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 7/62 (11%) Query: 6 AVRILR-LPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 RI++ P M TI+D + FP L + W +I+ W++ Sbjct: 36 TTRIIKARPERQGLLPMGETTIWDKVRA------GEFPTPIKLTERITAWRIEDIEAWMA 89 Query: 65 QR 66 + Sbjct: 90 SK 91 >UniRef50_A3LAG5 Putative uncharacterized protein n=1 Tax=Pseudomonas aeruginosa 2192 RepID=A3LAG5_PSEAE Length = 77 Score = 50.2 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 7/58 (12%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 R + L V +TGM IYD + FPK R G ++ W EAEID++ + Sbjct: 11 PRFIDLNMVKMRTGMGTTFIYDHMKK------GDFPKGRKFG-RATRWAEAEIDQYCN 61 >UniRef50_B8J053 Phage transcriptional regulator, AlpA n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8J053_DESDA Length = 78 Score = 49.8 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 6/53 (11%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDE 61 +R V+Q + R T++ + FPK R LG K+ W AE+ Sbjct: 18 FVRTKQVLQMFPIGRTTLWRKIRA------GKFPKPRKLGPKTSVWDVAELRA 64 >UniRef50_A9C2W4 Phage transcriptional regulator, AlpA n=1 Tax=Delftia acidovorans SPH-1 RepID=A9C2W4_DELAS Length = 124 Score = 49.4 bits (117), Expect = 3e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 6/57 (10%) Query: 10 LRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 + L + ++ + I + FP+ R L + VG+I AE++ W+ R Sbjct: 47 ISLQEAARAVDLSESQIQKLVQT------GDFPRPRQLSARRVGFIVAEVEAWVMSR 97 >UniRef50_D0SV87 Predicted protein n=1 Tax=Acinetobacter lwoffii SH145 RepID=D0SV87_ACILW Length = 95 Score = 49.4 bits (117), Expect = 3e-05, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 6/55 (10%) Query: 12 LPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 PA + G++ TI+ W+ + FP L W ++I W+ + Sbjct: 43 RPASLGLIGVSDKTIWQWVR------EGKFPSPVKLSKCVTVWRMSDIQVWMESK 91 >UniRef50_A3QCD1 Phage transcriptional regulator, AlpA n=1 Tax=Shewanella loihica PV-4 RepID=A3QCD1_SHELP Length = 52 Score = 49.4 bits (117), Expect = 4e-05, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 18/31 (58%) Query: 37 YDATFPKKRMLGVKSVGWIEAEIDEWLSQRC 67 FPK LG + V W+E E+++W++ + Sbjct: 2 AAGYFPKSVKLGPRLVAWVEEEVEQWIADKI 32 >UniRef50_UPI0001BCF8F6 hypothetical protein COK_1269 n=1 Tax=Mannheimia haemolytica serotype A2 str. BOVINE RepID=UPI0001BCF8F6 Length = 66 Score = 49.4 bits (117), Expect = 4e-05, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 9/68 (13%) Query: 1 MNNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEID 60 M L + G++R+ IY + FP G + W ++ Sbjct: 1 MQTNQTY--LNAQEIAAHLGISRSGIYSLMKSSH------FPSPVKFG-RLSRWKVDDLR 51 Query: 61 EWLSQRCK 68 +WL+ + + Sbjct: 52 QWLNNQEQ 59 >UniRef50_B6B6B2 Transcriptional regulator, AlpA family n=2 Tax=Rhodobacterales RepID=B6B6B2_9RHOB Length = 68 Score = 49.0 bits (116), Expect = 4e-05, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 9/65 (13%) Query: 2 NNRSAVR--ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEI 59 N+ R ++ + V +RA++Y + FPK LG S W +++ Sbjct: 4 NSNPQSRDHLIDIKTVCATLCRSRASLYRDIQ------RGEFPKPIKLG-NSSRWRMSDL 56 Query: 60 DEWLS 64 ++ + Sbjct: 57 NKIID 61 >UniRef50_A1SRJ4 Phage transcriptional regulator, AlpA n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SRJ4_PSYIN Length = 70 Score = 49.0 bits (116), Expect = 4e-05, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 37/62 (59%), Gaps = 6/62 (9%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 ++ +R+ V+ +TG++R+ +Y + + TFP+ L +V W+E+EI+EW+ R Sbjct: 1 MKFIRIKEVLNRTGLSRSVLYAKVAAQ------TFPQSFTLSGSTVAWLESEIEEWIESR 54 Query: 67 CK 68 + Sbjct: 55 IQ 56 >UniRef50_C7BGF0 Transcriptional regulator gp34 n=1 Tax=Burkholderia phage KS9 RepID=C7BGF0_9CAUD Length = 91 Score = 48.7 bits (115), Expect = 5e-05, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 6/56 (10%) Query: 10 LRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 L LPAV ++ ATI + + FPK R+L + V W+ EI+ W Sbjct: 6 LDLPAVATAVSLSEATIQKLVR------EHKFPKPRVLSDRRVAWLTREIETWAEA 55 >UniRef50_B4SNK5 Phage transcriptional regulator, AlpA n=1 Tax=Stenotrophomonas maltophilia R551-3 RepID=B4SNK5_STRM5 Length = 71 Score = 48.3 bits (114), Expect = 7e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 7/60 (11%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRCK 68 +L L V Q TGM IY + FP+ +G +++ WI++E+ W+ Q+ Sbjct: 10 LLSLDRVRQMTGMGTTFIYGEIKV------GRFPRSIRIGRRAL-WIQSEVQGWVRQQIA 62 >UniRef50_B7UGV1 Predicted protein n=2 Tax=Escherichia RepID=B7UGV1_ECO27 Length = 199 Score = 48.3 bits (114), Expect = 8e-05, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 6/64 (9%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 + + + V ++++T+ W + FPK +G + V + AEI W Sbjct: 140 PSQGYVSVQKVADFLAVSKSTLQRW------KMRPDFPKPVKMGERRVMFDAAEILAWSK 193 Query: 65 QRCK 68 ++ K Sbjct: 194 KQAK 197 >UniRef50_B1EIE3 Conserved domain protein n=1 Tax=Escherichia albertii TW07627 RepID=B1EIE3_9ESCH Length = 68 Score = 47.9 bits (113), Expect = 1e-04, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 6/66 (9%) Query: 1 MNNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEID 60 M+ +R VI ++ +T+++W+ FP LG + + I Sbjct: 1 MDTLPKSGYMRPAQVINHFQISESTLWNWVKK------GKFPSPDKLGDGVSRFDVSAIR 54 Query: 61 EWLSQR 66 +WL+ R Sbjct: 55 QWLADR 60 >UniRef50_B1Y3D5 Phage transcriptional regulator, AlpA n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y3D5_LEPCP Length = 78 Score = 47.9 bits (113), Expect = 1e-04, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 7/61 (11%) Query: 6 AVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 +L V G++ ATIY K +G + W ++ ++++ Sbjct: 24 PGALLTARTVSAVLGLSVATIYRLAAAGDL-------KPVRMGPRCTRWRSGDVQAFMAR 76 Query: 66 R 66 + Sbjct: 77 Q 77 >UniRef50_Q7NRD0 Putative uncharacterized protein n=1 Tax=Chromobacterium violaceum RepID=Q7NRD0_CHRVO Length = 76 Score = 47.5 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 6/49 (12%) Query: 18 KTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 + +T++ + TFP L + W +I EWL + Sbjct: 30 ILPFSVSTLWRRVRA------GTFPAPIKLSDRVTAWKAEDIREWLDSQ 72 >UniRef50_B0QSY9 Putative uncharacterized protein n=1 Tax=Haemophilus parasuis 29755 RepID=B0QSY9_HAEPR Length = 76 Score = 47.5 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%) Query: 14 AVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 V+ K R + +N DA+FPK L + W AEID W+S + Sbjct: 24 DVMTKICCKRTKLSSLMNE-----DASFPKPIRLSKNHIRWNLAEIDAWISAQ 71 >UniRef50_B1JMJ2 Phage transcriptional regulator, AlpA n=5 Tax=Enterobacteriaceae RepID=B1JMJ2_YERPY Length = 93 Score = 47.5 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 6/63 (9%) Query: 3 NRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEW 62 R++R + T ++R+T + N + FP ++ LG S W+ +++ W Sbjct: 21 AEPYDRLVREKERQRITSISRSTAWLLEN------EGRFPARKPLGRNSCAWLLSDLLCW 74 Query: 63 LSQ 65 + Sbjct: 75 VRN 77 >UniRef50_Q2SXA4 Prophage CP4-57 regulatory protein (AlpA) family n=1 Tax=Burkholderia thailandensis E264 RepID=Q2SXA4_BURTA Length = 80 Score = 47.1 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 6/57 (10%) Query: 10 LRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 L + +V ++ A I+ + + FP+ R L + VGW+ E++EW R Sbjct: 6 LDIASVSAAVSLSPAVIHKLVRQE------EFPRPRALSGRRVGWLTREVEEWAEAR 56 >UniRef50_A1RET4 Phage transcriptional regulator, AlpA n=2 Tax=Shewanella RepID=A1RET4_SHESW Length = 71 Score = 47.1 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 8/67 (11%) Query: 2 NNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKS--VGWIEAEI 59 N+ S+ R++R T ++R T + FPK+R L +S V W+ +E+ Sbjct: 7 NHESSDRLVREAERKSITSISRTTAWQLERK------GLFPKRRQLYPQSNHVCWLLSEL 60 Query: 60 DEWLSQR 66 + W+S R Sbjct: 61 NAWVSNR 67 >UniRef50_O68768 Putative uncharacterized protein Y1108 n=20 Tax=Enterobacteriaceae RepID=O68768_YERPE Length = 187 Score = 47.1 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 3/58 (5%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKR-MLGVKSVGWIEAEIDEWLSQ 65 ++ L V + TGM+R I + R FP + +S W A++ WL Sbjct: 79 LVGLSDVAEMTGMSRQAI--TMLKDGLRGGGDFPCPIQRIQGQSPLWDWADVANWLEA 134 >UniRef50_Q8EJS6 DNA-binding protein, putative n=2 Tax=Shewanella RepID=Q8EJS6_SHEON Length = 82 Score = 47.1 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 6/63 (9%) Query: 3 NRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEW 62 + RI+R T ++R+ + FPK+ LG +SVGW +E+ +W Sbjct: 9 SAIQDRIVRETERKLITSISRSQAFQLERLN------RFPKRIKLGNRSVGWRLSELMQW 62 Query: 63 LSQ 65 + Sbjct: 63 VHS 65 >UniRef50_Q5P091 Putative uncharacterized protein n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5P091_AZOSE Length = 69 Score = 47.1 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 5/58 (8%) Query: 12 LPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRCKL 69 + V + T++ W+ D TFP++ L W + W++ R ++ Sbjct: 15 VKDVAAILTIHEKTVWRWMRE-----DDTFPRQIRLSSACSRWDLNAVRAWIAGRVEV 67 >UniRef50_A1SXJ6 Phage transcriptional regulator, AlpA n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SXJ6_PSYIN Length = 87 Score = 47.1 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 33/60 (55%), Gaps = 6/60 (10%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRCK 68 +++ P+V+++ + +T+++ +N P LG ++VG+++ E+D LS R Sbjct: 5 VVKKPSVLEQFAFSNSTLFNQINK------GLMPPGIHLGDRAVGYLQHELDAVLSARIA 58 >UniRef50_B2RED9 Putative bacteriophage DNA-binding transcription regulator n=1 Tax=Sinorhizobium meliloti RepID=B2RED9_RHIME Length = 58 Score = 46.7 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 6/59 (10%) Query: 8 RILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 ++ + V + T ++R T++ + FPK L V + EI++W++ R Sbjct: 3 NLMTIQQVCKATSLSRTTLWRL------QQRGDFPKGMRLSSSRVAYAIPEIEKWIASR 55 >UniRef50_B2PWA4 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC 25827 RepID=B2PWA4_PROST Length = 84 Score = 46.3 bits (109), Expect = 3e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 7/60 (11%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRCK 68 ++ + + + T M Y + FPK LG +S W ++I +W+S + + Sbjct: 27 LVDMKYITECTKMTDKWFYALIKK------GQFPKPIKLG-RSSRWWLSDIHDWISSQQE 79 >UniRef50_B1JQY2 Phage transcriptional regulator, AlpA n=1 Tax=Yersinia pseudotuberculosis YPIII RepID=B1JQY2_YERPY Length = 111 Score = 46.3 bits (109), Expect = 3e-04, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 6/67 (8%) Query: 2 NNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDE 61 + R+ + G++ T++ W+ D F K L + AE+ Sbjct: 49 DGYPTDGYARVTKTAKFLGVSYPTLWRWMR------DGDFVKPIELSEGVKVFDAAEVRA 102 Query: 62 WLSQRCK 68 W++ + + Sbjct: 103 WVNSKKE 109 >UniRef50_C6RIC6 Transcriptional regulator, AlpA family n=1 Tax=Campylobacter showae RM3277 RepID=C6RIC6_9PROT Length = 63 Score = 46.3 bits (109), Expect = 3e-04, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 29/57 (50%), Gaps = 6/57 (10%) Query: 10 LRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 L Q G++ AT++ ++ FPK + L +++ ++++++D +L R Sbjct: 11 LSPKETAQYLGISTATLWRFMKRD------DFPKPKRLTERTIRFLKSDLDTYLQDR 61 >UniRef50_B5EC14 Phage transcriptional regulator, AlpA n=5 Tax=Bacteria RepID=B5EC14_GEOBB Length = 60 Score = 46.0 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 6/55 (10%) Query: 10 LRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 LRLP V++ + + ++ + +P L + W +I + Sbjct: 10 LRLPEVLKIIPVCKTVWWEGIKA------GKYPAGVKLSARCTAWRAEDIQALIE 58 >UniRef50_Q2CB88 Putative uncharacterized protein n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CB88_9RHOB Length = 74 Score = 46.0 bits (108), Expect = 4e-04, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 8/70 (11%) Query: 1 MNNRSAVRILRLPAVIQKTGM--ARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAE 58 M + + L +++ G+ + T+ W FP++ L SV W+ +E Sbjct: 1 MTFDTGRKTLATRDDLKRLGIQASNTTLLRW------EARGRFPRRVRLAGTSVAWLSSE 54 Query: 59 IDEWLSQRCK 68 +++WL++R Sbjct: 55 LEDWLAERAA 64 >UniRef50_A1SV80 Phage transcriptional regulator, AlpA n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SV80_PSYIN Length = 57 Score = 46.0 bits (108), Expect = 4e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 31/62 (50%), Gaps = 6/62 (9%) Query: 7 VRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQR 66 +++L V + G +R T++ W FP+ + +++GW E + +WL+++ Sbjct: 1 MKLLTTDEVTKIVGRSRGTLFRWWKK------GIFPEPLLYNGRTLGWNEEAVQQWLNKK 54 Query: 67 CK 68 + Sbjct: 55 EQ 56 >UniRef50_C1D7T2 Phage transcriptional regulator, AlpA n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D7T2_LARHH Length = 77 Score = 46.0 bits (108), Expect = 4e-04, Method: Composition-based stats. Identities = 7/48 (14%), Positives = 15/48 (31%), Gaps = 6/48 (12%) Query: 18 KTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 + T++ + TFP L + W ++ W+ Sbjct: 30 VLPFSATTLWRRVRA------GTFPAPIKLSRRITCWRAEDVRAWIES 71 >UniRef50_C1YHU5 Prophage CP4-57 regulatory protein (AlpA) n=2 Tax=Nocardiopsaceae RepID=C1YHU5_NOCDA Length = 305 Score = 45.6 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 8/69 (11%) Query: 3 NRSAVRILRLP-------AVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWI 55 VRI+RL + + TG +R + W+ + FP +S+ W+ Sbjct: 64 TVPGVRIVRLDRELVGISDIAEITGRSRQNVDQWVRGQRHDGVP-FPAPEAAVGRSLVWL 122 Query: 56 EAEIDEWLS 64 +E++ WL Sbjct: 123 WSEVNAWLR 131 >UniRef50_C6XNR9 Phage transcriptional regulator, AlpA n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XNR9_HIRBI Length = 69 Score = 45.6 bits (107), Expect = 5e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 9/61 (14%) Query: 9 ILRLPAVIQKTG---MARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQ 65 +RL +I G ++++T + + D FPK R LG + W EI Sbjct: 12 FVRLKQIIAPYGPIPVSKSTWWAGVK------DGRFPKPRKLGSRVTVWKADEIRALYEA 65 Query: 66 R 66 + Sbjct: 66 K 66 >UniRef50_B8DSS4 Putative uncharacterized protein n=4 Tax=Bifidobacterium animalis subsp. lactis RepID=B8DSS4_BIFA0 Length = 68 Score = 45.6 bits (107), Expect = 5e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 5/63 (7%) Query: 4 RSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWL 63 + +L + V ++ GM+ TIY K + P +G + + W ++D+W+ Sbjct: 8 TTTRELLDIKQVAERIGMSATTIY----HKRRTHKDEVPPAIRIG-RKLFWRPKDVDQWI 62 Query: 64 SQR 66 R Sbjct: 63 DNR 65 >UniRef50_D2U094 Phage transcriptional regulator n=1 Tax=Arsenophonus nasoniae RepID=D2U094_9ENTR Length = 42 Score = 45.2 bits (106), Expect = 6e-04, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 22/32 (68%) Query: 37 YDATFPKKRMLGVKSVGWIEAEIDEWLSQRCK 68 + FP++ +G +S+ ++E+E+D+W++ + Sbjct: 2 DNGEFPQQVKIGTRSIAFVESEVDKWVADKIA 33 >UniRef50_C1TKS7 Predicted transcriptional regulator, COG3311 n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TKS7_9BACT Length = 113 Score = 45.2 bits (106), Expect = 7e-04, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 6/53 (11%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDE 61 L L V+ + ++T +D + +P L + V W E+ + Sbjct: 53 FLSLEQVLAIFPVGKSTWWDGVKK------GDYPAPYRLSDRRVAWDMEELRQ 99 >UniRef50_A3NTN9 Prophage CP4-57 regulatory protein (AlpA) n=4 Tax=Burkholderia pseudomallei RepID=A3NTN9_BURP0 Length = 69 Score = 45.2 bits (106), Expect = 7e-04, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 25/60 (41%), Gaps = 5/60 (8%) Query: 9 ILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLSQRCK 68 ++R + G+ +T++ + FPK + + ++ E+D W++ R Sbjct: 9 VVRPAKAAELLGIGVSTLWRYTKTVE-----DFPKPVRINSRVSVFVREELDNWVTNRIA 63 >UniRef50_C6CP56 Phage transcriptional regulator, AlpA n=4 Tax=Enterobacteriaceae RepID=C6CP56_DICZE Length = 73 Score = 45.2 bits (106), Expect = 7e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 6/62 (9%) Query: 5 SAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKKRMLGVKSVGWIEAEIDEWLS 64 +R + + G++ TI W+ + T P+ L + EI+ WL+ Sbjct: 12 PTTGYIRRFRMPELLGVSMPTIDRWVK------NGTLPRPVKLTDNVTAFDAVEINRWLA 65 Query: 65 QR 66 +R Sbjct: 66 ER 67 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.315 0.159 0.524 Lambda K H 0.267 0.0487 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 502,154,085 Number of Sequences: 3077464 Number of extensions: 17442146 Number of successful extensions: 54468 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 429 Number of HSP's successfully gapped in prelim test: 334 Number of HSP's that attempted gapping in prelim test: 53438 Number of HSP's gapped (non-prelim): 768 length of query: 70 length of database: 1,040,396,356 effective HSP length: 42 effective length of query: 28 effective length of database: 911,142,868 effective search space: 25512000304 effective search space used: 25512000304 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 88 (38.3 bits)