BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (804 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0AES7 DNA gyrase subunit B n=740 Tax=root RepID=GYRB_E... 1667 0.0 UniRef50_O51859 DNA gyrase subunit B n=208 Tax=Bacteria RepID=GY... 1269 0.0 UniRef50_Q89B37 DNA gyrase subunit B n=30 Tax=Proteobacteria Rep... 1080 0.0 UniRef50_B2UCF3 DNA gyrase subunit B n=47 Tax=Proteobacteria Rep... 953 0.0 UniRef50_A1TI33 DNA gyrase subunit B n=16 Tax=Burkholderiales Re... 912 0.0 UniRef50_B6IVV7 DNA gyrase subunit B n=192 Tax=cellular organism... 845 0.0 UniRef50_B8GXQ0 DNA gyrase subunit B n=17 Tax=cellular organisms... 834 0.0 UniRef50_Q1RHT8 DNA gyrase subunit B n=702 Tax=Proteobacteria Re... 801 0.0 UniRef50_D0LFL2 DNA gyrase subunit B n=1 Tax=Haliangium ochraceu... 793 0.0 UniRef50_Q2GD49 DNA gyrase subunit B n=9 Tax=cellular organisms ... 789 0.0 UniRef50_A3EQC0 DNA gyrase subunit B n=7 Tax=Bacteria RepID=A3EQ... 745 0.0 UniRef50_D0RQH0 DNA gyrase subunit B n=2 Tax=Bacteria RepID=D0RQ... 744 0.0 UniRef50_B5YGU1 DNA gyrase subunit B n=9 Tax=Bacteria RepID=B5YG... 739 0.0 UniRef50_Q9Z8R3 DNA gyrase subunit B n=80 Tax=cellular organisms... 730 0.0 UniRef50_C3XDF7 DNA gyrase subunit B n=5 Tax=Campylobacterales R... 712 0.0 UniRef50_O33367 DNA gyrase subunit B n=6 Tax=Bacteria RepID=GYRB... 698 0.0 UniRef50_B1ZTK2 DNA gyrase subunit B n=194 Tax=cellular organism... 696 0.0 UniRef50_C1DUC4 DNA gyrase subunit B n=5 Tax=Bacteria RepID=C1DU... 682 0.0 UniRef50_C5B4P3 DNA gyrase, subunit B n=1 Tax=Methylobacterium e... 682 0.0 UniRef50_UPI0001C311B1 DNA gyrase, B subunit n=1 Tax=Conexibacte... 681 0.0 UniRef50_O67137 DNA gyrase subunit B n=13 Tax=cellular organisms... 680 0.0 UniRef50_Q1MQ88 DNA gyrase subunit B n=6 Tax=Bacteria RepID=Q1MQ... 677 0.0 UniRef50_Q04WF3 DNA gyrase subunit B n=20 Tax=Bacteria RepID=Q04... 646 0.0 UniRef50_B2URM5 DNA gyrase subunit B n=25 Tax=Bacteria RepID=B2U... 645 0.0 UniRef50_A6G5S5 DNA gyrase subunit B n=11 Tax=Bacteria RepID=A6G... 642 0.0 UniRef50_Q9ZLX3 DNA gyrase subunit B n=50 Tax=Epsilonproteobacte... 641 0.0 UniRef50_B6BRC2 DNA gyrase subunit B n=1 Tax=Candidatus Pelagiba... 637 0.0 UniRef50_O50627 DNA gyrase subunit B n=82 Tax=cellular organisms... 632 e-179 UniRef50_Q1V1K8 DNA topoisomerase (ATP-hydrolyzing) chain B (DNA... 629 e-178 UniRef50_Q9X3Y6 DNA gyrase subunit B n=840 Tax=cellular organism... 629 e-178 UniRef50_A6DH73 DNA gyrase subunit B n=7 Tax=cellular organisms ... 608 e-172 UniRef50_D2R8B1 DNA gyrase, B subunit n=80 Tax=Bacteria RepID=D2... 607 e-172 UniRef50_B8FXX0 DNA gyrase subunit B n=70 Tax=Bacteria RepID=B8F... 603 e-171 UniRef50_UPI00016C54E0 DNA gyrase subunit B n=1 Tax=Gemmata obsc... 595 e-168 UniRef50_Q6GKU0 DNA gyrase subunit B n=143 Tax=cellular organism... 575 e-162 UniRef50_P21558 DNA gyrase subunit B n=61 Tax=cellular organisms... 571 e-161 UniRef50_Q44272 DNA gyrase subunit B (Fragment) n=2942 Tax=cellu... 570 e-161 UniRef50_Q2FUD6 DNA gyrase subunit B n=1 Tax=Methanospirillum hu... 567 e-160 UniRef50_B3TAI0 Putative DNA gyrase B n=1 Tax=uncultured marine ... 557 e-157 UniRef50_C7QFM2 DNA gyrase subunit B n=8 Tax=Bacteria RepID=C7QF... 556 e-156 UniRef50_A5TY73 DNA gyrase subunit B n=542 Tax=Bacteria RepID=GY... 553 e-156 UniRef50_Q9A0L0 DNA gyrase subunit B n=56 Tax=cellular organisms... 547 e-154 UniRef50_P34031 DNA gyrase subunit B n=54 Tax=Bacteria RepID=GYR... 543 e-152 UniRef50_D0J983 DNA gyrase subunit B n=22 Tax=cellular organisms... 539 e-151 UniRef50_C7M118 DNA gyrase subunit B n=1 Tax=Acidimicrobium ferr... 537 e-151 UniRef50_B6GDL9 DNA gyrase subunit B n=2 Tax=Collinsella RepID=B... 535 e-150 UniRef50_Q2NJM1 DNA gyrase subunit B n=5 Tax=Mollicutes RepID=Q2... 526 e-147 UniRef50_Q94BZ7 DNA gyrase subunit B, mitochondrial n=83 Tax=cel... 521 e-146 UniRef50_P50074 DNA gyrase subunit B, novobiocin-resistant n=117... 517 e-145 UniRef50_P66938 DNA topoisomerase 4 subunit B n=158 Tax=Bacteria... 510 e-143 UniRef50_P43053 DNA gyrase subunit B n=78 Tax=Bacteria RepID=GYR... 504 e-141 UniRef50_UPI0001A7B046 ATP binding / DNA binding / DNA topoisome... 493 e-137 UniRef50_A9KS52 DNA topoisomerase (ATP-hydrolyzing) n=33 Tax=Bac... 492 e-137 UniRef50_B7G298 Predicted protein n=3 Tax=cellular organisms Rep... 489 e-136 UniRef50_P50028 DNA gyrase subunit B n=331 Tax=cellular organism... 489 e-136 UniRef50_C4G1I8 Putative uncharacterized protein n=1 Tax=Abiotro... 487 e-136 UniRef50_B9ZQ26 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Thio... 473 e-131 UniRef50_D0MI55 DNA topoisomerase (ATP-hydrolyzing) n=8 Tax=Bact... 469 e-130 UniRef50_A0Q197 DNA topoisomerase IV subunit B n=34 Tax=Clostrid... 469 e-130 UniRef50_Q9FAX1 DNA gyrase subunit B (Fragment) n=60 Tax=Bacteri... 464 e-129 UniRef50_Q9X3Y5 DNA gyrase subunit B (Fragment) n=740 Tax=cellul... 462 e-128 UniRef50_C6PY14 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Clos... 462 e-128 UniRef50_P94281 DNA gyrase subunit B n=211 Tax=cellular organism... 460 e-127 UniRef50_Q9FAX2 DNA gyrase subunit B (Fragment) n=166 Tax=root R... 456 e-126 UniRef50_Q2S2H3 Type II DNA topoisomerase, B subunit n=3 Tax=Bac... 450 e-125 UniRef50_A1SCM1 DNA gyrase subunit B n=28 Tax=Actinomycetales Re... 449 e-124 UniRef50_Q18GY2 DNA gyrase subunit B n=10 Tax=cellular organisms... 447 e-124 UniRef50_Q59526 DNA topoisomerase 4 subunit B n=9 Tax=Bacteria R... 446 e-123 UniRef50_A8LVU4 DNA gyrase subunit B domain protein n=37 Tax=Act... 444 e-123 UniRef50_Q4AAR9 Topoisomerase IV subunit B n=9 Tax=Mycoplasma Re... 442 e-122 UniRef50_P78016 DNA topoisomerase 4 subunit B n=3 Tax=Mycoplasma... 442 e-122 UniRef50_D1BTM8 DNA topoisomerase (ATP-hydrolyzing) n=8 Tax=Acti... 431 e-119 UniRef50_Q98RQ4 DNA gyrase subunit B n=13 Tax=cellular organisms... 431 e-119 UniRef50_A7I8U0 DNA gyrase subunit B n=1 Tax=Candidatus Methanor... 427 e-118 UniRef50_D2NTW6 Type IIA topoisomerase, B subunit n=10 Tax=Actin... 409 e-112 UniRef50_D1C5K6 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Spha... 409 e-112 UniRef50_Q83G36 DNA gyrase subunit B-like protein n=2 Tax=Trophe... 407 e-111 UniRef50_P77966 Ssp gyrB intein n=45 Tax=cellular organisms RepI... 403 e-110 UniRef50_D0RNK2 DNA topoisomerase IV, B subunit n=1 Tax=alpha pr... 398 e-109 UniRef50_Q10XN8 DNA gyrase subunit B n=6 Tax=Bacteria RepID=Q10X... 389 e-106 UniRef50_C0W359 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Acti... 381 e-104 UniRef50_D0WQJ3 Putative DNA gyrase subunit B n=1 Tax=Actinomyce... 379 e-103 UniRef50_A0LUT9 DNA topoisomerase (ATP-hydrolyzing) n=15 Tax=Act... 375 e-102 UniRef50_P43703 DNA topoisomerase 4 subunit B n=456 Tax=Bacteria... 370 e-101 UniRef50_Q8GD47 DNA gyrase subunit B (Fragment) n=21 Tax=Bacteri... 363 2e-98 UniRef50_B3R5I8 DNA topoisomerase IV, subunit B n=15 Tax=Proteob... 356 2e-96 UniRef50_Q4UIX0 DNA topoisomerase II, putative n=2 Tax=Theileria... 353 2e-95 UniRef50_UPI00016B23A5 DNA gyrase subunit B n=1 Tax=candidate di... 350 2e-94 UniRef50_B1N7R8 Gyrase b (Fragment) n=1 Tax=uncultured bacterium... 347 8e-94 UniRef50_A7ASL8 DNA gyrase subunit B, putative n=1 Tax=Babesia b... 345 4e-93 UniRef50_A1EGM8 DNA gyrase subunit B (Fragment) n=1 Tax=uncultur... 343 2e-92 UniRef50_B9PF30 Predicted protein n=6 Tax=cellular organisms Rep... 312 3e-83 UniRef50_A7K5X7 DNA gyrase subunit B n=5 Tax=Gammaproteobacteria... 307 8e-82 UniRef50_B6EUG7 DNA gyrase subunit B (Fragment) n=6 Tax=Actinomy... 301 8e-80 UniRef50_Q2JC55 DNA topoisomerase II n=4 Tax=Actinomycetales Rep... 298 5e-79 UniRef50_Q7RHG3 DNA topoisomerase II, putative n=3 Tax=Plasmodiu... 294 1e-77 UniRef50_Q6UGM9 DNA gyrase B subunit (Fragment) n=1 Tax=Fusobact... 286 2e-75 UniRef50_B3LD45 DNA gyrase subunit b, putative n=1 Tax=Plasmodiu... 281 7e-74 UniRef50_B3SFQ4 Putative uncharacterized protein (Fragment) n=1 ... 281 9e-74 UniRef50_A6TSS9 DNA gyrase, subunit B domain protein n=1 Tax=Alk... 277 1e-72 UniRef50_A5K8Q8 DNA gyrase subunit b, putative n=1 Tax=Plasmodiu... 276 2e-72 UniRef50_A8S818 Putative uncharacterized protein n=6 Tax=Bacteri... 276 2e-72 UniRef50_A3DC64 DNA topoisomerase (ATP-hydrolyzing) n=11 Tax=Bac... 276 3e-72 UniRef50_B0YNR7 DNA gyrase subunit B (Fragment) n=7 Tax=Gammapro... 275 5e-72 UniRef50_C0DAN0 Putative uncharacterized protein (Fragment) n=1 ... 273 2e-71 UniRef50_Q1NK64 DNA topoisomerase II:ATP-binding region, ATPase-... 272 4e-71 UniRef50_Q59189 DNA topoisomerase 4 subunit B n=27 Tax=Bacteria ... 263 2e-68 UniRef50_B1ZME3 DNA topoisomerase type IIA subunit B region 2 do... 253 2e-65 UniRef50_B2RL68 DNA topoisomerase IV B subunit n=60 Tax=Bacteria... 250 1e-64 UniRef50_A6N697 DNA gyrase subunit B (Fragment) n=2 Tax=uncultur... 245 6e-63 UniRef50_C1SL26 DNA gyrase subunit B n=1 Tax=Denitrovibrio aceti... 243 2e-62 UniRef50_D2QHC5 DNA topoisomerase type IIA subunit B region 2 do... 242 5e-62 UniRef50_D2RAT5 DNA gyrase, B subunit, C-terminal domain protein... 242 5e-62 UniRef50_B6XTR9 Putative uncharacterized protein n=2 Tax=Bifidob... 241 1e-61 UniRef50_B4V0A2 DNA gyrase subunit B n=1 Tax=Streptomyces sp. Mg... 238 5e-61 UniRef50_D2QB32 GyrB2 DNA gyrase subunit B n=8 Tax=Bifidobacteri... 238 9e-61 UniRef50_Q8I528 Term=DNA gyrase subunit B;evidence=inferred from... 233 3e-59 UniRef50_A7XYG8 GyrB (Fragment) n=6 Tax=Chlamydia trachomatis Re... 231 1e-58 UniRef50_B1BBK7 DNA topoisomerase n=5 Tax=root RepID=B1BBK7_CLOBO 229 3e-58 UniRef50_C7PPD8 DNA topoisomerase type IIA subunit B region 2 do... 229 4e-58 UniRef50_C9E3K9 DNA gyrase subunit B (Fragment) n=1 Tax=Rhodococ... 221 9e-56 UniRef50_B5H7D6 DNA gyrase subunit B n=2 Tax=Streptomyces RepID=... 217 2e-54 UniRef50_A6N6C7 DNA gyrase subunit B (Fragment) n=1 Tax=uncultur... 209 5e-52 UniRef50_UPI0001698B4B DNA gyrase, B subunit n=1 Tax=Endoriftia ... 205 7e-51 UniRef50_C0F8C8 DNA gyrase, B subunit (Fragment) n=1 Tax=Wolbach... 203 3e-50 UniRef50_A9CRV4 DNA gyrase subunit B (Fragment) n=2 Tax=Bradyrhi... 202 6e-50 UniRef50_Q44273 DNA gyrase subunit B (Fragments) n=5 Tax=Acineto... 193 2e-47 UniRef50_B4YQA0 DNA gyrase subunit B (Fragment) n=1 Tax=Lactobac... 188 7e-46 UniRef50_UPI0001C4799C UPI0001C4799C related cluster n=1 Tax=unk... 187 1e-45 UniRef50_Q6Y3A9 Gyrase B (Fragment) n=1 Tax=Pelobacter acidigall... 186 2e-45 UniRef50_B2ZYK3 Type IIA topoisomerase n=1 Tax=Ralstonia phage R... 180 2e-43 UniRef50_A3SXB5 DNA topoisomerase IV subunit B n=1 Tax=Sulfitoba... 180 2e-43 UniRef50_UPI0001976865 DNA topoisomerase (ATP-hydrolyzing) n=1 T... 179 3e-43 UniRef50_C3IT50 DNA gyrase subunit B n=3 Tax=Bacillus thuringien... 179 4e-43 UniRef50_Q0QCK3 ParE (Fragment) n=163 Tax=cellular organisms Rep... 179 5e-43 UniRef50_D2J2Q7 DNA gyrase subunit B (Fragment) n=7 Tax=Coryneba... 175 6e-42 UniRef50_A3Q8K7 DNA topoisomerase (ATP-hydrolyzing) n=6 Tax=Myco... 170 2e-40 UniRef50_B1PJM5 DNA gyrase subunit B (Fragment) n=1 Tax=Micromon... 164 1e-38 UniRef50_P90520 DNA topoisomerase 2, mitochondrial n=1 Tax=Dicty... 160 2e-37 UniRef50_Q55BP5 Probable DNA topoisomerase 2 n=1 Tax=Dictyosteli... 158 9e-37 UniRef50_A7ANB1 DNA topoisomerase 2 n=3 Tax=Piroplasmida RepID=A... 158 9e-37 UniRef50_D2UZM0 DNA topoisomerase II n=1 Tax=Naegleria gruberi R... 157 1e-36 UniRef50_B6K4K4 DNA topoisomerase 2 n=1 Tax=Schizosaccharomyces ... 154 2e-35 UniRef50_Q6PUA3 DNA topoisomerase 2 n=4 Tax=Tetrahymena thermoph... 153 3e-35 UniRef50_B3H4G2 DNA topoisomerase 2 n=14 Tax=Magnoliophyta RepID... 150 2e-34 UniRef50_P30182 DNA topoisomerase 2 n=6 Tax=Eukaryota RepID=TOP2... 150 3e-34 UniRef50_D2V5K5 DNA topoisomerase II n=1 Tax=Naegleria gruberi R... 149 6e-34 UniRef50_D0MV61 DNA topoisomerase 2 n=2 Tax=Eukaryota RepID=D0MV... 147 1e-33 UniRef50_C1E5N4 DNA topoisomerase 2 n=1 Tax=Micromonas sp. RCC29... 146 3e-33 UniRef50_A0C0L0 DNA topoisomerase 2 n=3 Tax=Paramecium tetraurel... 145 4e-33 UniRef50_Q8SS63 DNA topoisomerase 2 n=1 Tax=Encephalitozoon cuni... 145 5e-33 UniRef50_B7G2K9 DNA topoisomerase 2 (Fragment) n=1 Tax=Phaeodact... 144 1e-32 UniRef50_C5KAQ6 DNA topoisomerase 2 n=1 Tax=Perkinsus marinus AT... 144 2e-32 UniRef50_A8PTE9 DNA topoisomerase 2 n=1 Tax=Malassezia globosa C... 144 2e-32 UniRef50_A5E7X7 DNA topoisomerase 2 n=4 Tax=Saccharomycetaceae R... 144 2e-32 UniRef50_D1AIT2 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Seba... 144 2e-32 UniRef50_D1ZCL6 DNA topoisomerase 2 n=6 Tax=Sordariomyceta RepID... 143 3e-32 UniRef50_O24308 DNA topoisomerase 2 n=3 Tax=fabids RepID=TOP2_PEA 142 4e-32 UniRef50_Q5KSK9 DNA topoisomerase 2 n=5 Tax=Basidiomycota RepID=... 142 7e-32 UniRef50_B0EP10 DNA topoisomerase 2 n=3 Tax=Entamoeba RepID=B0EP... 142 7e-32 UniRef50_O41065 A583L protein n=7 Tax=Chlorovirus RepID=O41065_P... 141 1e-31 UniRef50_Q6Y3B0 Gyrase B (Fragment) n=1 Tax=Geobacter pelophilus... 140 2e-31 UniRef50_UPI00016C4A69 DNA gyrase subunit B n=2 Tax=Gemmata obsc... 139 4e-31 UniRef50_Q9Y8G8 DNA topoisomerase 2 n=79 Tax=cellular organisms ... 139 4e-31 UniRef50_UPI0000DB6EE1 PREDICTED: similar to DNA topoisomerase 2... 139 6e-31 UniRef50_B1PL25 DNA gyrase subunit B (Fragment) n=79 Tax=Bacteri... 137 1e-30 UniRef50_Q7YZS4 DNA topoisomerase 2 n=1 Tax=Physarum polycephalu... 137 2e-30 UniRef50_P08096 DNA topoisomerase 2 n=1 Tax=Schizosaccharomyces ... 137 2e-30 UniRef50_Q6RCM1 DNA topoisomerase 2 n=2 Tax=Trichomonas vaginali... 137 2e-30 UniRef50_A8Q6X4 DNA topoisomerase 2 n=1 Tax=Brugia malayi RepID=... 136 3e-30 UniRef50_C0SNC2 DNA gyrase subunit B (Fragment) n=87 Tax=Lactoba... 135 5e-30 UniRef50_Q1CZR7 DNA gyrase, B subunit, truncated n=1 Tax=Myxococ... 135 9e-30 UniRef50_Q56C43 Gp60plus39 DNA topoisomerase subunit n=3 Tax=T4-... 132 4e-29 UniRef50_A8V367 Gyrase B (Fragment) n=1 Tax=Hydrogenivirga sp. 1... 132 4e-29 UniRef50_A4HGT2 DNA topoisomerase 2 n=11 Tax=Trypanosomatidae Re... 132 6e-29 UniRef50_B7XIW3 DNA topoisomerase 2 n=1 Tax=Enterocytozoon biene... 130 2e-28 UniRef50_P34534 Putative DNA topoisomerase 2, mitochondrial n=5 ... 130 2e-28 UniRef50_P11388 DNA topoisomerase 2-alpha n=47 Tax=Eukaryota Rep... 130 2e-28 UniRef50_B8C981 DNA topoisomerase 2 (Fragment) n=1 Tax=Thalassio... 129 4e-28 UniRef50_C9DGI8 Gp60plus39 DNA topoisomerase subunit n=1 Tax=Def... 129 5e-28 UniRef50_B9PK68 DNA topoisomerase 2 n=3 Tax=Toxoplasma gondii Re... 129 6e-28 UniRef50_P27570 DNA topoisomerase 2 n=15 Tax=Trypanosomatidae Re... 128 9e-28 UniRef50_Q02880 DNA topoisomerase 2-beta n=175 Tax=Eukaryota Rep... 126 3e-27 UniRef50_UPI0000DA3D74 PREDICTED: similar to topoisomerase (DNA)... 125 5e-27 UniRef50_Q04PE7 DNA topoisomerase (ATP-hydrolyzing), subunit B n... 125 5e-27 UniRef50_UPI0001788AA3 transcriptional regulator, ArsR family n=... 125 5e-27 UniRef50_Q9HGH7 DNA topoisomerase 2 (Fragment) n=1 Tax=Pichia ku... 125 7e-27 UniRef50_P06786 DNA topoisomerase 2 n=27 Tax=Fungi/Metazoa group... 124 1e-26 UniRef50_Q8HFR9 DNA topoisomerase 2 n=1 Tax=Bodo saltans RepID=Q... 124 2e-26 UniRef50_A7TEE2 DNA topoisomerase 2 n=1 Tax=Vanderwaltozyma poly... 121 1e-25 UniRef50_C3RSA4 DNA gyrase subunit B (Fragment) n=3 Tax=Lactobac... 121 1e-25 UniRef50_Q5UQE6 DNA topoisomerase 2 n=3 Tax=root RepID=TOP2_MIMIV 119 4e-25 UniRef50_Q9QSK1 DNA topoisomerase 2 n=1 Tax=Invertebrate iridesc... 119 5e-25 UniRef50_C7U0P4 DNA topoisomerase II n=2 Tax=unclassified Phycod... 116 4e-24 UniRef50_Q9FYE9 DNA gyrase subunit B-like protein n=3 Tax=Arabid... 115 5e-24 UniRef50_P41001 DNA topoisomerase 2 n=10 Tax=Eukaryota RepID=TOP... 115 7e-24 UniRef50_Q5CQG8 DNA topoisomerase 2 n=4 Tax=Apicomplexa RepID=Q5... 115 8e-24 UniRef50_UPI0001908742 DNA topoisomerase IV subunit B n=1 Tax=Rh... 114 2e-23 UniRef50_C4R475 DNA topoisomerase 2 n=1 Tax=Pichia pastoris GS11... 113 3e-23 UniRef50_P09176 DNA topoisomerase large subunit n=13 Tax=T4-like... 111 1e-22 UniRef50_Q76Z86 Topoisomerase II large subunit n=1 Tax=Aeromonas... 110 2e-22 UniRef50_C8XUB6 Topoisomerase II large subunit n=1 Tax=Shigella ... 108 7e-22 UniRef50_C8NCI6 DNA gyrase subunit B n=1 Tax=Cardiobacterium hom... 106 4e-21 UniRef50_Q2SFQ7 Type IIA topoisomerase (DNA gyrase/topo II, topo... 105 5e-21 UniRef50_Q9F8M6 DNA gyrase subunit B (Fragment) n=1 Tax=Carboxyd... 105 7e-21 UniRef50_UPI0001924D0A PREDICTED: similar to DNA topoisomerase 2... 104 2e-20 UniRef50_A5M9T1 DNA gyrase subunit B n=2 Tax=Streptococcus pneum... 104 2e-20 UniRef50_A0MYL3 DNA gyrase B (Fragment) n=14 Tax=Streptomyces Re... 103 2e-20 UniRef50_D2XAH7 DNA topoisomerase II n=1 Tax=Marseillevirus RepI... 103 3e-20 UniRef50_Q6E0M3 GyrB (Fragment) n=1 Tax=Bacillus thuringiensis R... 102 6e-20 UniRef50_D0NA12 DNA topoisomerase 2 n=1 Tax=Phytophthora infesta... 97 3e-18 UniRef50_UPI0000D546F8 DNA gyrase, B subunit n=1 Tax=Psychroflex... 96 6e-18 UniRef50_UPI00016B21F7 DNA gyrase subunit B n=1 Tax=candidate di... 95 1e-17 UniRef50_B9U3G6 DNA topoisomerase 2 (Fragment) n=1 Tax=Pleurotus... 94 2e-17 UniRef50_C9S837 DNA topoisomerase 2 n=2 Tax=Sordariomycetes RepI... 94 2e-17 UniRef50_A0BK44 Chromosome undetermined scaffold_111, whole geno... 94 3e-17 UniRef50_C1ZHM4 Type IIA topoisomerase (DNA gyrase/topo II, topo... 92 6e-17 UniRef50_Q4RIW2 DNA topoisomerase 2 (Fragment) n=1 Tax=Tetraodon... 89 5e-16 UniRef50_C6LX36 DNA topoisomerase 2 n=3 Tax=Giardia intestinalis... 89 5e-16 UniRef50_A9ZPQ0 DNA gyrase subunit B (Fragment) n=5 Tax=Coryneba... 89 7e-16 UniRef50_A7C3L4 Topoisomerase B subunit n=1 Tax=Beggiatoa sp. PS... 89 8e-16 UniRef50_D2TEU4 Putative DNA topoisomerase n=2 Tax=dsDNA viruses... 88 1e-15 UniRef50_B2G4Y3 GyrB protein (Fragment) n=1 Tax=Bacillus sp. AKG... 86 4e-15 UniRef50_Q196X4 DNA topoisomerase 2 n=1 Tax=Invertebrate iridesc... 86 5e-15 UniRef50_UPI0001698B4D DNA gyrase subunit B n=1 Tax=Endoriftia p... 84 2e-14 UniRef50_A8NKQ4 Putative uncharacterized protein n=1 Tax=Coprino... 80 2e-13 UniRef50_UPI0000382E10 COG0187: Type IIA topoisomerase (DNA gyra... 80 5e-13 UniRef50_Q2B8E8 DNA gyrase, B subunit n=1 Tax=Bacillus sp. NRRL ... 79 8e-13 UniRef50_Q27537 Chromosome instability 4 n=3 Tax=Chromadorea Rep... 72 7e-11 UniRef50_Q7UUI4 DNA gyrase subunit B n=1 Tax=Rhodopirellula balt... 72 1e-10 UniRef50_Q401L8 DNA gyrase subunit B (Fragment) n=1 Tax=Mycobact... 71 1e-10 UniRef50_D0L8E8 DNA topoisomerase n=22 Tax=cellular organisms Re... 70 4e-10 UniRef50_B9XLD1 Type IIA topoisomerase (DNA gyrase/topo II topoi... 70 4e-10 UniRef50_D2PP74 GCN5-related N-acetyltransferase n=1 Tax=Kribbel... 69 1e-09 UniRef50_C5Z2Y6 Putative uncharacterized protein Sb10g016438 (Fr... 69 1e-09 UniRef50_A6G3Y8 Type IIA topoisomerase (DNA gyrase/topo II, topo... 67 4e-09 UniRef50_B4V6F8 Putative uncharacterized protein n=3 Tax=Actinom... 67 4e-09 UniRef50_Q5FEK8 Putative uncharacterized protein n=1 Tax=Ehrlich... 64 3e-08 UniRef50_A0FHT1 Putative DNA gyrase subunit B (Fragment) n=2 Tax... 63 6e-08 UniRef50_C7UEA1 Predicted protein n=22 Tax=Enterococcus faecalis... 62 1e-07 UniRef50_A4YWI0 DNA gyrase subunit B GyrB n=1 Tax=Bradyrhizobium... 55 1e-05 UniRef50_Q9K2S8 GyrB protein (Fragment) n=2 Tax=Mycoplasma homin... 53 6e-05 UniRef50_UPI0001909AAD DNA gyrase subunit B n=1 Tax=Rhizobium et... 47 0.003 UniRef50_UPI0001B56D9F DNA gyrase subunit B n=1 Tax=Streptomyces... 46 0.005 UniRef50_A0BK45 Chromosome undetermined scaffold_111, whole geno... 46 0.006 UniRef50_C7P9T7 Type IIA topoisomerase (DNA gyrase/topo II topoi... 45 0.014 UniRef50_Q0P7Q0 DNA gyrase subunit B (Fragment) n=12 Tax=Phyllob... 45 0.015 UniRef50_Q070G7 GyrB-like ATPase domain protein n=1 Tax=Crocodil... 44 0.023 UniRef50_D1S521 Type IIA topoisomerase (DNA gyrase/topo II topoi... 44 0.030 UniRef50_Q23CP4 DNA topoisomerase 2 n=3 Tax=Tetrahymena thermoph... 42 0.085 >UniRef50_P0AES7 DNA gyrase subunit B n=740 Tax=root RepID=GYRB_ECO57 Length = 804 Score = 1667 bits (4316), Expect = 0.0, Method: Compositional matrix adjust. Identities = 804/804 (100%), Positives = 804/804 (100%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII Sbjct: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 Query: 61 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV Sbjct: 61 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVT 180 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVT Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVT 180 Query: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNI 240 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNI Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNI 240 Query: 241 FYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKE 300 FYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKE Sbjct: 241 FYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKE 300 Query: 301 GYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEY 360 GYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEY Sbjct: 301 GYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEY 360 Query: 361 LLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSEL 420 LLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSEL Sbjct: 361 LLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSEL 420 Query: 421 YLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR 480 YLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR Sbjct: 421 YLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR 480 Query: 481 DEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKG 540 DEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKG Sbjct: 481 DEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKG 540 Query: 541 KQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERR 600 KQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERR Sbjct: 541 KQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERR 600 Query: 601 YPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLF 660 YPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLF Sbjct: 601 YPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLF 660 Query: 661 EPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFE 720 EPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFE Sbjct: 661 EPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFE 720 Query: 721 QALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTL 780 QALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTL Sbjct: 721 QALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTL 780 Query: 781 MGDAVEPRRAFIEENALKAANIDI 804 MGDAVEPRRAFIEENALKAANIDI Sbjct: 781 MGDAVEPRRAFIEENALKAANIDI 804 >UniRef50_O51859 DNA gyrase subunit B n=208 Tax=Bacteria RepID=GYRB_VIBPA Length = 805 Score = 1269 bits (3283), Expect = 0.0, Method: Compositional matrix adjust. Identities = 623/806 (77%), Positives = 703/806 (87%), Gaps = 3/806 (0%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 MS +YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDN+IDEALAGHCK+I+ Sbjct: 1 MSENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIV 60 Query: 61 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 VTIH DNSVSV DDGRGIPT +HPEE VSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV Sbjct: 61 VTIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVT 180 SVVNALS+K+ L I R G IH Q Y HG P+APLAV G+T+KTGT +RFWPS ETF+N T Sbjct: 121 SVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDTDKTGTQIRFWPSAETFSN-T 179 Query: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDG-KEDHFHYEGGIKAFVEYLNKNKTPIHPN 239 EF Y+ILAKRLRELSFLNSGVSI+L D+R+ K+DHF YEGGI+AFV++LN NKTPI Sbjct: 180 EFHYDILAKRLRELSFLNSGVSIKLIDEREADKQDHFMYEGGIQAFVQHLNTNKTPIIEK 239 Query: 240 IFYFSTEK-DGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 IF+F E+ DGI VEVA+QWNDGFQENI+CFTNNIPQRDGGTHLAGFRAA+TRTLN++MD Sbjct: 240 IFHFDLEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAALTRTLNSFMD 299 Query: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 KEG+SKKAK + +GDDAREGL AVVSVKVPDPKFSSQTKDKLVSSEVKSAVE M E L+ Sbjct: 300 KEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLS 359 Query: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 E+L+ENP++AK+V KIIDAARAREAAR+AREMTRRKGALDLAGLPGKLADCQE+DPALS Sbjct: 360 EFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 419 Query: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 ELY+VEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI Sbjct: 420 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479 Query: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 GRDEYNPDKLRYH+IIIMTDADVDGSHIRTLLLTFFYRQMPE++ERG+VYIAQPPLYKVK Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPPLYKVK 539 Query: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598 KGKQEQYIKD+EAM+QYQ+S+ALD A+LH NA APALAGEALEKLV +YNA K+ +RM Sbjct: 540 KGKQEQYIKDEEAMNQYQVSLALDNASLHVNAEAPALAGEALEKLVQQYNAGIKLADRMS 599 Query: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658 RRYP+A++ ELIY LT D V W LV +LN KE SQ+ ++V +AE Sbjct: 600 RRYPRALVHELIYTSRLTAEQCHDAAAVEAWTKQLVEQLNAKEVGASQYSYEVELHAELG 659 Query: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718 L P + VRTHGV ++ L +F+ EY ++ L E L GLLEE A+I+RGER PV+S Sbjct: 660 LSLPKIIVRTHGVTHEHALSVDFLNSKEYGKLADLSEVLDGLLEEGAYIKRGERTLPVSS 719 Query: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 F +AL+WLVKES RGLS QRYKGLGEMNP+QLWETTMDPE+RRM++VT++DA+ ADQLFT Sbjct: 720 FAEALEWLVKESMRGLSRQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADQLFT 779 Query: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 TLMGD VEPRR FIEENALK AN+D+ Sbjct: 780 TLMGDQVEPRRHFIEENALKVANLDV 805 >UniRef50_Q89B37 DNA gyrase subunit B n=30 Tax=Proteobacteria RepID=GYRB_BUCBP Length = 804 Score = 1080 bits (2792), Expect = 0.0, Method: Compositional matrix adjust. Identities = 504/806 (62%), Positives = 644/806 (79%), Gaps = 4/806 (0%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 M N+Y SS+IK+LKGLDAV+KRPGMYIG+TDDGTGLHHMVFEVVDN+IDEALAG CK II Sbjct: 1 MKNTYTSSNIKILKGLDAVKKRPGMYIGNTDDGTGLHHMVFEVVDNSIDEALAGFCKNII 60 Query: 61 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 VTIH DNS+S+QDDGRGIPT IH EEG+SAAEVIMTVLHAGGKFD+ SYKVSGGLHGVGV Sbjct: 61 VTIHDDNSISIQDDGRGIPTDIHDEEGISAAEVIMTVLHAGGKFDNTSYKVSGGLHGVGV 120 Query: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVT 180 SVVNALS+KLEL I R+ KI+ QIY++G P+ L++ G T+ TGT +RFWP+LE FTNVT Sbjct: 121 SVVNALSKKLELFIYRDKKIYYQIYKNGYPKNTLSIIGYTKITGTKIRFWPNLEIFTNVT 180 Query: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNI 240 +F +EIL+KRLRELSFLNS VSI L D + ++F+ +GG+K F+ YLNKNK PIH I Sbjct: 181 QFNWEILSKRLRELSFLNSNVSIYLDDAKKHINENFYQQGGLKEFIIYLNKNKKPIHSKI 240 Query: 241 FYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKE 300 FYFS++K+ + VE+A+QWN GFQENIYC+TNNIPQ+DGGTHL+GFR+A+TRT+N Y+DKE Sbjct: 241 FYFSSKKNNVEVEIAMQWNKGFQENIYCYTNNIPQQDGGTHLSGFRSALTRTMNNYLDKE 300 Query: 301 GYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEY 360 GY KK K++ GDD REGL A++S+K+ DPKFSSQTK+KLVSSEVKSA+E +NE L E+ Sbjct: 301 GYIKKNKINIIGDDTREGLTAIISIKINDPKFSSQTKNKLVSSEVKSALESLVNEFLMEF 360 Query: 361 LLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSEL 420 LLENP ++K +V KII+++R R AARRAREMTR+KG LDL GLPGKL+DCQERDPALSE+ Sbjct: 361 LLENPQESKNIVTKIIESSRVRNAARRAREMTRKKGTLDLIGLPGKLSDCQERDPALSEI 420 Query: 421 YLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR 480 YLVEGDSAGGSAKQ RNRKNQAILPLKGKILNVEKAR++KMLSSQEV TLITALGCGIG+ Sbjct: 421 YLVEGDSAGGSAKQARNRKNQAILPLKGKILNVEKARYEKMLSSQEVTTLITALGCGIGK 480 Query: 481 DEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKG 540 +EYNP+KLRYH IIIMTDADVDGSHIRTLLLTFFYR MPEI++RG++YIAQPPLYKV K Sbjct: 481 NEYNPEKLRYHRIIIMTDADVDGSHIRTLLLTFFYRYMPEIIQRGYLYIAQPPLYKVTKN 540 Query: 541 KQEQYIKDDEAMDQYQISIALDGATLHTNASA--PALAGEALEKLVSEYNATQKMINRME 598 + +YIKD M+ Y++S AL+ L +N L+K++SEY Q + +++ Sbjct: 541 NKTRYIKDKNTMENYKLSTALENTILESNTDKEIKIKCNYTLKKIISEYKIIQTIFFKIK 600 Query: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658 +P +L E++Y P L +L+DE V W+N V +L K + + N++ Sbjct: 601 DNFPLNILNEMLYHPKLN--NLNDEVYVNNWINNFVIQLQKKSSSTRNYSAHITFNSKDK 658 Query: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718 +FEP+++++ + +Y D FI EY++I +LG+KL+ +++++ I++ + + + Sbjct: 659 IFEPLIKIQKNAEVKEYKFDITFINSYEYQKIYSLGKKLQEMIQKNIHIKKNNKTYSIKN 718 Query: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 F++ + L++ S + + IQRYKGLGEMNPEQLW+TTM+PE+RRML++T+ + ++LF Sbjct: 719 FQKNFELLIQNSFKNVLIQRYKGLGEMNPEQLWKTTMNPETRRMLKITLHNIDTTNKLFN 778 Query: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 TLMGD+VEPR+ FIE ALKA+NIDI Sbjct: 779 TLMGDSVEPRKLFIELYALKASNIDI 804 >UniRef50_B2UCF3 DNA gyrase subunit B n=47 Tax=Proteobacteria RepID=B2UCF3_RALPJ Length = 842 Score = 953 bits (2464), Expect = 0.0, Method: Compositional matrix adjust. Identities = 494/831 (59%), Positives = 609/831 (73%), Gaps = 30/831 (3%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 +NSYD++SI++L+GL+AVRKRPGMYIGDT DGTGLHH+VFEV+DN+IDEALAGHC EI V Sbjct: 14 ANSYDAASIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGHCTEIQV 73 Query: 62 TIHADNSVSVQDDGRGIPTGIH----PEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHG 117 TIH DNS+SV D+GRGIPTGI E SA E+ MT LHAGGKF+ NSYKVSGGLHG Sbjct: 74 TIHTDNSISVIDNGRGIPTGIKFDDKHEPKRSATEIAMTELHAGGKFNQNSYKVSGGLHG 133 Query: 118 VGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQ-----------------APLAVTGET 160 VGVS VN LS+ +++ +++ GK+H + GVPQ +PL V G T Sbjct: 134 VGVSCVNGLSKWMKVTVRQGGKVHYIEFAQGVPQNRLIETVQGPDGQMVEVSPLRVLGTT 193 Query: 161 EKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEG 220 +K GT V F E FTNV E+ YEIL+KR+RELSFLN+GV IRL D+R GKE+ F + G Sbjct: 194 DKRGTEVHFLADEEIFTNV-EYHYEILSKRIRELSFLNNGVHIRLTDQRTGKEEDFAFSG 252 Query: 221 GIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGT 280 G+K FVEY+NKNKT +HP IF+ + EKDG+ VEV++QWND + E + CFTNNIPQRDGGT Sbjct: 253 GVKGFVEYINKNKTVLHPTIFFAAGEKDGVAVEVSMQWNDAYNEQVLCFTNNIPQRDGGT 312 Query: 281 HLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKL 340 HL G RAAMTR +N Y+ +KKAKV +GDD REGL V+SVKVP+PKFSSQTKDKL Sbjct: 313 HLTGLRAAMTRVINKYIADNEIAKKAKVDTSGDDMREGLTCVLSVKVPEPKFSSQTKDKL 372 Query: 341 VSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDL 400 VSSEV+ VE+ + + L+++LLE P DAKI+ GKI++AARAREAAR+AREMTRRKG LD Sbjct: 373 VSSEVRLPVEEVVAKALSDFLLETPVDAKIICGKIVEAARAREAARKAREMTRRKGVLDG 432 Query: 401 AGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 460 GLPGKLADCQE+DPALSEL++VEGDSAGGSAKQGR+RK QAILPLKGKILNVE+ARFDK Sbjct: 433 MGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDK 492 Query: 461 MLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPE 520 MLSSQEV TLITA+G GIG+D+YN DKLRYH IIIMTDADVDGSHIRTLLLTFFYRQMPE Sbjct: 493 MLSSQEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPE 552 Query: 521 IVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEAL 580 I+ERGHVYIAQPPLYK+K GK+E+YIKDD M Y + ALD A L +AG+AL Sbjct: 553 IIERGHVYIAQPPLYKIKHGKEERYIKDDVEMAAYLVRQALDTAVL-VRPDGTEIAGDAL 611 Query: 581 EKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDK 640 +L +Y ++ +I R+ R L+ + +L ++ + + R + A + E+ Sbjct: 612 AELARQYQLSRGVIERLSRVIDADALRAIAEGVSLDLSNEAAAEASARTLKARLLEMQGN 671 Query: 641 EQH---GSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKL 697 G+ + + + + +V R HG +D +F+ G +Y + + Sbjct: 672 ASSANGGATADAFMQYDEKTEKYRIMVVRRQHGNQRLSHIDADFVAGADYTALSSTAATF 731 Query: 698 RGLLEEDAFIERGE----RRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWET 753 +GL+ + A + RG R Q VA F A+ WL+ E+ RG+S QRYKGLGEMNPEQLWET Sbjct: 732 QGLIGDGAKVRRGTGDKVREQNVADFHAAMTWLLSEAERGVSRQRYKGLGEMNPEQLWET 791 Query: 754 TMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 TMD RR+LRV ++DAIAADQ+FTTLMGD VEPRR FIE NAL A NID+ Sbjct: 792 TMDVTQRRLLRVQIEDAIAADQIFTTLMGDDVEPRRNFIESNALVARNIDV 842 >UniRef50_A1TI33 DNA gyrase subunit B n=16 Tax=Burkholderiales RepID=A1TI33_ACIAC Length = 877 Score = 912 bits (2357), Expect = 0.0, Method: Compositional matrix adjust. Identities = 484/848 (57%), Positives = 604/848 (71%), Gaps = 51/848 (6%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 S+ Y +I++L+GL+AVRKRPGMYIGDT DGTGLHH+VFEVVDN+IDEALAGHC +I+V Sbjct: 36 SDGYGEGAIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVV 95 Query: 62 TIHADNSVSVQDDGRGIPTGIH----PEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHG 117 TIH+DNS+SV D+GRGIPTG+ E SAAE+ +T LHAGGKF+ NSYKVSGGLHG Sbjct: 96 TIHSDNSISVVDNGRGIPTGVKMDDKHEPKRSAAEIALTELHAGGKFNQNSYKVSGGLHG 155 Query: 118 VGVSVVNALSQKLELVIQREGKIH----------RQIYE--HGVPQAPLAVTGETEKTGT 165 VGVS VNALS+ L L ++R+GK+H +I E +GV +P+ VTGET+K GT Sbjct: 156 VGVSCVNALSKMLRLTVRRDGKVHLLEFSQGFVQNRILETVNGVEVSPMRVTGETDKRGT 215 Query: 166 MVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAF 225 V F P E F +F YEILAKRLRELSFLN+GV IRL+D+R GKED F GG+ F Sbjct: 216 EVHFLPDTEIFKENNDFHYEILAKRLRELSFLNNGVRIRLKDERTGKEDDFSGAGGVMGF 275 Query: 226 VEYLNKNKTPIHPNIFYFSTEKDG----------IGVEVALQWNDGFQENIYCFTNNIPQ 275 V+++N +K +HPN F+ + + IGVEVA+QWNDGF E++ CFTNNIPQ Sbjct: 276 VQFINASKKVLHPNAFHATGSRPAETYGGIPGTEIGVEVAMQWNDGFNESVLCFTNNIPQ 335 Query: 276 RDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQ 335 RDGGTHL G RAAMTR + Y+++ +KKAKV +GDD REGL V+SVKVP+PKFSSQ Sbjct: 336 RDGGTHLTGLRAAMTRVIGKYIEQNELAKKAKVEVSGDDMREGLCCVLSVKVPEPKFSSQ 395 Query: 336 TKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRK 395 TKDKLVSSEV++ VE + + L +YL E P DAKI+ GKI++AARAREAAR+AREMTRRK Sbjct: 396 TKDKLVSSEVRAPVEDIVAKALTDYLEERPNDAKILCGKIVEAARAREAARKAREMTRRK 455 Query: 396 GALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 455 G LD GLPGKLADCQE+DPALSE+Y+VEGDSAGGSAKQGR+RK QAILPL+GKILNVEK Sbjct: 456 GVLDGMGLPGKLADCQEKDPALSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEK 515 Query: 456 ARFDKMLSSQEVATLITALGCGIGR-----------DEYNPDKLRYHSIIIMTDADVDGS 504 AR++K+L+S E+ TLITALG GIG+ D++N DKLRYH IIIMTDADVDG+ Sbjct: 516 ARYEKLLTSNEILTLITALGTGIGKASADGTGKGGADDFNVDKLRYHRIIIMTDADVDGA 575 Query: 505 HIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGA 564 HIRTLLLTFFYRQMPE+VERGH+YIAQPPLYKVK GK+E Y+KD A+D + + +AL A Sbjct: 576 HIRTLLLTFFYRQMPELVERGHIYIAQPPLYKVKNGKEELYLKDGPALDTFLLRVALRDA 635 Query: 565 TLHTNA-SAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDE 623 ++ T A L GE L L ++ + +I R+ + L+ + L + D Sbjct: 636 SVTTGGEQARTLDGETLSTLAQKHQVAEAVIERLSAFMDREALRAIADGVALNLDTVEDA 695 Query: 624 QTVTRWVNALVSELNDKEQHGS-QWKFDVHTNAEQNLFEPIVRV--RTHGVDTDYPLDHE 680 + + A + EL +FD T+ +P++R+ R HG + + Sbjct: 696 EASAVALQAKLRELTTTGVPAEVAGEFDARTD------KPVLRISRRHHGNIKSSIITQD 749 Query: 681 FITGGEYRRICTLGEKLRGLLEEDAFIERGE----RRQPVASFEQALDWLVKESRRGLSI 736 F+ G +Y + RGLL E A + RGE R + V+ F QA+ WL+KE+ R S Sbjct: 750 FVHGADYAALAEAAHTFRGLLGEGAKVLRGEGERQREEKVSDFRQAMAWLIKEAERTTSR 809 Query: 737 QRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENA 796 QRYKGLGEMNPEQLWETTMDPE RR+LRV ++DAI AD++FT LMGD VEPRR FIE NA Sbjct: 810 QRYKGLGEMNPEQLWETTMDPEVRRLLRVQIEDAIEADRVFTMLMGDEVEPRRDFIETNA 869 Query: 797 LKAANIDI 804 L+A NID+ Sbjct: 870 LRAGNIDV 877 >UniRef50_B6IVV7 DNA gyrase subunit B n=192 Tax=cellular organisms RepID=B6IVV7_RHOCS Length = 876 Score = 845 bits (2184), Expect = 0.0, Method: Compositional matrix adjust. Identities = 468/867 (53%), Positives = 591/867 (68%), Gaps = 69/867 (7%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 + Y +SSIKVLKGLDAVRKRPGMYIGDTDDG+GLHHMV+EVVDNAIDEALAG+ + V Sbjct: 15 AEEYGASSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGYADRVEV 74 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 T++AD SV+V+D+GRGIP IHP EGVSAAEVIMT LHAGGKFD NSYKVSGGLHGVGVS Sbjct: 75 TLNADGSVTVRDNGRGIPVDIHPGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVS 134 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-----------TGTMVRFW 170 VVNALS+ L L + R+G++ + HG APLA G TGT V F Sbjct: 135 VVNALSETLFLRVWRKGRVWEMTFRHGDAVAPLADVGAAPVVASGPRAGQPLTGTEVTFL 194 Query: 171 PSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKR--DGKEDHFHYEGGIKAFVEY 228 PS +TFT TEF+++ L R REL+FLNSGV + D R + K YEGG++AFV+Y Sbjct: 195 PSKQTFTK-TEFDFQTLEHRFRELAFLNSGVLLVFTDARGVEPKVTELFYEGGLEAFVQY 253 Query: 229 LNKNKTPIH-PNIFYFSTEKDGIG----VEVALQWNDGFQENIYCFTNNIPQRDGGTHLA 283 L+++K +H P+I +G VEVALQWND + E+ CFTNNIPQRDGGTHLA Sbjct: 254 LDRSKAALHKPSIAMRGERVSDLGTTVTVEVALQWNDSYHESCLCFTNNIPQRDGGTHLA 313 Query: 284 GFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSS 343 GFRAA+TRT+N Y ++ G KK KV+ +GDD REGL V+SVKVPDPKFSSQTKDKLVSS Sbjct: 314 GFRAALTRTINKYAEESGILKKEKVALSGDDMREGLTCVLSVKVPDPKFSSQTKDKLVSS 373 Query: 344 EVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGL 403 EV+ VE + + LA + E+P DA+ +VGK+++AA AREAARRARE+TRRKGALD+A L Sbjct: 374 EVRPVVETVVADALATWFEEHPADARRIVGKVVEAAAAREAARRARELTRRKGALDMASL 433 Query: 404 PGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLS 463 PGKLADCQERDPALSEL++VEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKMLS Sbjct: 434 PGKLADCQERDPALSELFIVEGDSAGGSAKQGRSRQFQAILPLRGKILNVERARFDKMLS 493 Query: 464 SQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVE 523 S E+ TLI ALG GIGR+E++PDK RYH IIIMTDADVDG+HIRTLLLTFFYRQMP ++E Sbjct: 494 SAEIGTLIAALGTGIGREEFDPDKARYHKIIIMTDADVDGAHIRTLLLTFFYRQMPALIE 553 Query: 524 RGHVYIAQPPLYKVKKG-KQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEK 582 RG++YIAQPPLY+VK+G +E+Y+KDD ++ Y I+ D T T +G+ L Sbjct: 554 RGYLYIAQPPLYRVKRGTAKERYLKDDRQLEDYLIAQGTDDVTF-TLGDGTTRSGDDLRA 612 Query: 583 LVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEA---DLSDEQTVTRWVNALVS-ELN 638 LV + + + + R KA +E++ Q L+ A L D + R + V+ LN Sbjct: 613 LVEQARVARHALTTLAR---KAGSREVVEQAALSGALSSRLLDNPDLARTLAEEVARRLN 669 Query: 639 D-----------------KEQHGSQ-----------------------WKFDVHTNAEQN 658 D E GS W ++ + Sbjct: 670 DLAVRQAAAALQASGGPAPEGDGSPGSASAAGATGTGTASTGGVPAGGWTAELIEDGPHG 729 Query: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFI-ERGERRQPVA 717 + ++ R GV + LD + + E RR+ + E LR + + + R +R VA Sbjct: 730 VGGYVLARRRRGVTHRHVLDVDLLKSVEARRLDGMAEALRAVYDTPGVLTHRVKRLAAVA 789 Query: 718 SFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLF 777 +D ++++ R GL+IQRYKGLGEMNP+QLWETT+DP +R +L+V V A A+++F Sbjct: 790 GPAGLMDAVIEQGRAGLAIQRYKGLGEMNPDQLWETTLDPANRTLLQVKVSHADEAEEVF 849 Query: 778 TTLMGDAVEPRRAFIEENALKAANIDI 804 +TLMGD VEPRR FI+ENALK AN+D+ Sbjct: 850 STLMGDLVEPRRDFIQENALKVANLDV 876 >UniRef50_B8GXQ0 DNA gyrase subunit B n=17 Tax=cellular organisms RepID=GYRB_CAUCN Length = 805 Score = 834 bits (2155), Expect = 0.0, Method: Compositional matrix adjust. Identities = 451/808 (55%), Positives = 563/808 (69%), Gaps = 29/808 (3%) Query: 5 YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIH 64 Y + SIKVLKGLDAVRKRPGMYIGDTDDG+GLHHMV+EVVDNAIDEALAGH ++ V ++ Sbjct: 10 YGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHATKVQVILN 69 Query: 65 ADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN 124 AD SV+V DDGRGIP +H EGVSAAEVIMT LHAGGKFD NSYKVSGGLHGVGVSVVN Sbjct: 70 ADGSVTVTDDGRGIPVDMHEGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVN 129 Query: 125 ALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGET-----------EKTGTMVRFWPSL 173 ALS LEL+I R GK+H+ +E G L VTG++ TGT V F+PS Sbjct: 130 ALSDWLELLIHRNGKVHQMRFERGDAVTSLKVTGDSPVRTEGPKAGETLTGTEVTFFPSK 189 Query: 174 ETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK--EDHFHYEGGIKAFVEYLNK 231 +TF + EF+ + L RLREL+FLNSGV+I +D RD + E+ YEGGI+AFV +L+K Sbjct: 190 DTFAFI-EFDRKTLEHRLRELAFLNSGVTIWFKDHRDVEPWEEKLFYEGGIEAFVRHLDK 248 Query: 232 NKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTR 291 KTP+ KD + +++AL WND + E + CFTNNIPQRDGGTHL+ FRAA+TR Sbjct: 249 AKTPLLKAPIAVKGVKDKVEIDLALWWNDSYHEQMLCFTNNIPQRDGGTHLSAFRAALTR 308 Query: 292 TLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQ 351 + +Y + G KK KVS G+D+REGL V+SVKVPDPKFSSQTKDKLVSSEV+ AVE Sbjct: 309 IITSYAESSGILKKEKVSLGGEDSREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEG 368 Query: 352 QMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQ 411 ++E L+ + E+P +AK +V KI +AA AREAAR+ARE+TRRK ALD+ LPGKLADC Sbjct: 369 LVSEGLSTWFEEHPNEAKAIVTKIAEAAAAREAARKARELTRRKSALDITSLPGKLADCS 428 Query: 412 ERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLI 471 ERDPA SE+++VEGDSAGGSAKQ RNR NQA+LPL+GKILNVE+ARFDKMLSS ++ TLI Sbjct: 429 ERDPAKSEIFIVEGDSAGGSAKQARNRDNQAVLPLRGKILNVERARFDKMLSSDQIGTLI 488 Query: 472 TALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQ 531 TALG GIGRD++NPDK+RYH I++MTDADVDG+HIRTLLLTFFYRQMPE++ERG++YIAQ Sbjct: 489 TALGAGIGRDDFNPDKVRYHKIVLMTDADVDGAHIRTLLLTFFYRQMPELIERGYIYIAQ 548 Query: 532 PPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQ 591 PPLYK KGK +Y+KDD MD + + +DGA L AS + G+ L LV + + Sbjct: 549 PPLYKASKGKSSRYLKDDAEMDAFLVDEGVDGAELDL-ASGERMTGQDLLALVQTCRSAK 607 Query: 592 KMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDV 651 I+R+ R P +++ L E+ + TR L +E D G + Sbjct: 608 ANIDRLAARAPATAIEQAALSGLLGESP-NAAAAATRL--DLYAEEGDGPWSGERGDTGF 664 Query: 652 HTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGE 711 +F RVR GV LD + + RR+ KL + A R + Sbjct: 665 -------VFS---RVR-RGVSERVVLDDVLLHAADARRLAERAVKLTEIFSGRAIFRRKD 713 Query: 712 RRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI 771 + V ++ ++ R+GL+IQRYKGLGEMNP+QLWETT+D E+R +L+V V A Sbjct: 714 KSTTVRGPLDLVNAVLDAGRKGLTIQRYKGLGEMNPDQLWETTLDAEARTLLQVRVNHAD 773 Query: 772 AADQLFTTLMGDAVEPRRAFIEENALKA 799 AD +F+ LMGD VEPRR FI+ENAL A Sbjct: 774 DADDMFSRLMGDLVEPRREFIQENALDA 801 >UniRef50_Q1RHT8 DNA gyrase subunit B n=702 Tax=Proteobacteria RepID=GYRB_RICBR Length = 808 Score = 801 bits (2069), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/806 (51%), Positives = 572/806 (70%), Gaps = 12/806 (1%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 +SY + SIKVLKGL+AVRKRPGMYIGD DG+GLHHM++EVVDNAIDEALAG+C + V Sbjct: 11 SSYGADSIKVLKGLEAVRKRPGMYIGDVGDGSGLHHMIYEVVDNAIDEALAGYCDLVRVV 70 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 ++ + SV+V D+GRGIP IH EEG+SAAEVIMT LHAGGKFD NSYKVSGGLHGVGVSV Sbjct: 71 LNKNGSVTVSDNGRGIPVEIHEEEGISAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSV 130 Query: 123 VNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGE-TEKTGTMVRFWPSLETFTNVTE 181 VNALS LEL I R H + +G+ +APLAV E +K GT V F+PS+ETFTN+ E Sbjct: 131 VNALSDWLELRIWRNNTEHLIRFNNGITEAPLAVVKENVDKKGTEVTFFPSVETFTNI-E 189 Query: 182 FEYEILAKRLRELSFLNSGVSIRLRDKR--DGKEDHFHYEGGIKAFVEYLNKNKTPIHPN 239 F++ I+ RLREL+FLNSGV I L D R + KE F+Y GGI+A+V+YL++ K +H Sbjct: 190 FDFSIIEHRLRELAFLNSGVKILLTDNRFEEVKEVEFYYTGGIEAYVKYLDRAKHAVHSC 249 Query: 240 IFYFS-TEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 I + + GI +E+A+ WND + ENI CFTNNI QRDGGTHL+ F++ +TR + AY++ Sbjct: 250 IVVNADNTESGISLELAMHWNDSYHENILCFTNNIRQRDGGTHLSAFKSGLTRVITAYLE 309 Query: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 G +KKAK + +G+D REG+ V+SVKVPDPKFSSQTKDKLVSSEV+ VE + + Sbjct: 310 NTGLNKKAKNAFSGEDTREGICCVLSVKVPDPKFSSQTKDKLVSSEVRPIVENAVYTKVL 369 Query: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 E+ E+P DAK+++ KI++AA AREAAR+ARE+TRRK L+++ LPGKLADC +DPA+S Sbjct: 370 EWFEEHPADAKLIINKIMEAANAREAARKARELTRRKSVLEVSNLPGKLADCHAKDPAVS 429 Query: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 EL++VEGDSAGG+AKQGR+ K QAILPL+GKILNVE+ARFDKML S ++ TLITALG G+ Sbjct: 430 ELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERARFDKMLGSDQIGTLITALGTGV 489 Query: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 E++ +KLRYH +IIMTDADVDGSHIRTLLLTFFYR MPE++ +G++YIAQPPLYKVK Sbjct: 490 DNREFSLEKLRYHKVIIMTDADVDGSHIRTLLLTFFYRHMPELINKGYLYIAQPPLYKVK 549 Query: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598 KG E Y+K+++A+ Y + A+ ATL T + L E LE+L+S+ +++ Sbjct: 550 KGASELYLKNEQALQDYLVKSAISDATL-TLDNKEQLTNENLEELMSKVIKFNSLLDHAS 608 Query: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658 +++ ++ + E++ L + D ++ +R AL + LN EQ + ++V + + Sbjct: 609 KKFNRS-ITEILAINDLLNNKIFDNESDSRLKKAL-NALNSLEQSPDKTDWEVLKHENKI 666 Query: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718 F R G+ L E + E+ I L + + + + + + + Sbjct: 667 EFFRFSR----GLKERKILLREQLESFEFINISKLALTIFDVFNKQLKLVVKNQEFDILT 722 Query: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 L+ +++ ++G+S+QR+KGLGEMN +QLW+TT+DP+ R +++V V + A+ +F+ Sbjct: 723 PSILLNTIIECGKKGISVQRFKGLGEMNSDQLWDTTLDPKKRTLMQVRVAEVDEAEGIFS 782 Query: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 TLMGD VEPRR FI+ NAL N+D+ Sbjct: 783 TLMGDVVEPRRQFIQSNALNVVNLDV 808 >UniRef50_D0LFL2 DNA gyrase subunit B n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LFL2_HALO1 Length = 821 Score = 793 bits (2049), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/813 (51%), Positives = 560/813 (68%), Gaps = 13/813 (1%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 + YD+ SI VLKGL+AVRKRPGMYIGDTDDG+GLHHMV EVVDNA+DEALAG+C + + Sbjct: 12 ATEYDADSITVLKGLEAVRKRPGMYIGDTDDGSGLHHMVHEVVDNAVDEALAGYCDRVDI 71 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 TIH+DNS++V+D+GRGIP +H +EG AAE++MTVLHAGGKF+ NSYKVSGGLHGVGVS Sbjct: 72 TIHSDNSITVEDNGRGIPVAVHKDEGRPAAELVMTVLHAGGKFNQNSYKVSGGLHGVGVS 131 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTE 181 VVNALS+ L+L I+REGK++ Q Y G+P + L TG T++ GT + F P E F TE Sbjct: 132 VVNALSRTLKLEIRREGKVYFQEYRQGIPVSDLRSTGTTDRRGTKITFLPDPEVFKQ-TE 190 Query: 182 FEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIF 241 F + L++R RELS+LNSG++I + D+R+ ++ F YEGG+ +FV LN NK P+ + Sbjct: 191 FSFGALSQRFRELSYLNSGLTIAITDERESQQQVFCYEGGMASFVADLNANKNPV-TEVV 249 Query: 242 YFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEG 301 F+ E++G+ V++A+QWND + E I CFTN I +DGGTHL GFR +TRT+NAY + Sbjct: 250 AFTDEREGVTVDIAMQWNDSYAEQINCFTNTIKNKDGGTHLTGFRQGLTRTVNAYAAENK 309 Query: 302 YSKKAK-VSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEY 360 K+ K + +G+D REGL+AV+SVKV DPKFS+Q KDKLVSSEV AV +N+ L + Sbjct: 310 LLKELKGNNLSGEDLREGLVAVISVKVADPKFSNQPKDKLVSSEVAGAVAAVVNDKLQSF 369 Query: 361 LLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSEL 420 NP DA+ ++ K + AARAR+AAR+AREM +RKGAL+ LPGKLADCQERDP+ EL Sbjct: 370 FEHNPKDARSIIQKAVVAARARDAARKAREMVQRKGALEYTSLPGKLADCQERDPSKCEL 429 Query: 421 YLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR 480 ++VEG+SAGGSAKQGR+R+ QAILPLKGKILNVE+AR DKMLSSQE+ TLITALGCGIG Sbjct: 430 FIVEGESAGGSAKQGRDREFQAILPLKGKILNVERARMDKMLSSQEIVTLITALGCGIG- 488 Query: 481 DEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKG 540 E + +LRYH I+IMTDADVDGSHIRTLLLTFF+RQ PEI+E H+YIAQPPL+KVK+G Sbjct: 489 PEKDMGRLRYHRIVIMTDADVDGSHIRTLLLTFFFRQYPEIIENNHLYIAQPPLFKVKRG 548 Query: 541 KQEQYIKDDEAMDQYQISIALDGATLHTNA--------SAPALAGEALEKLVSEYNATQK 592 K E Y+K++ +++ Y + + + + + P + GEAL + + N ++ Sbjct: 549 KSETYLKNEHSLEDYVLDLVSKELVVRGTSGDGAGGDDAGPEITGEALHAFIKDTNEYRR 608 Query: 593 MINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVH 652 ++++R + I TE DL+ E+ V R + + L + + +F++ Sbjct: 609 HYTQLDKRGDSRLFASFIEGGEFTEQDLASEEGVERVRAGMRAYLEAHHKDLADLEFELV 668 Query: 653 TNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEED-AFIERGE 711 + E +++ + V D + + + E I L + L L + +GE Sbjct: 669 RDEEHSVYALRAPLEGGNVRRDTIIGRDLLQTREVEEIARLTKSLDATLRGPYVLVHKGE 728 Query: 712 RRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI 771 V + ++ + + R+GLSIQRYKGLGEMN +QLW+TTM P+ R +L+V + Sbjct: 729 DIGTVTTLDELAEAVEAVGRKGLSIQRYKGLGEMNSDQLWDTTMCPDQRTLLQVRIDARE 788 Query: 772 AADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 A +F+ LMGD VEPRR FIE NAL N+DI Sbjct: 789 EAADVFSVLMGDLVEPRRHFIENNALNVRNLDI 821 >UniRef50_Q2GD49 DNA gyrase subunit B n=9 Tax=cellular organisms RepID=Q2GD49_NEOSM Length = 783 Score = 789 bits (2038), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/818 (50%), Positives = 547/818 (66%), Gaps = 49/818 (5%) Query: 1 MSNS-YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEI 59 MSN+ Y + SIKVLKGL+AVRKRPGMYIGDTDDG+GLH MV+EVVDN++DE+LAG+C I Sbjct: 1 MSNTDYTADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHQMVYEVVDNSVDESLAGYCTAI 60 Query: 60 IVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 119 V I D S+SV+D+GRG+PT +H E GVSAAEVIMT LHAGGKFD +SYKVSGGLHGVG Sbjct: 61 EVVIDVDGSISVEDNGRGMPTDMHGE-GVSAAEVIMTQLHAGGKFDQSSYKVSGGLHGVG 119 Query: 120 VSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGET-EKTGTMVRFWPSLETFTN 178 VSVVNALS L+L I R+GK+H +E+G L+VTGE +KTGT+V F PS TF N Sbjct: 120 VSVVNALSDWLKLTIYRDGKVHFAEFENGETVRSLSVTGECGDKTGTLVHFLPSRSTFKN 179 Query: 179 VTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDH---FHYEGGIKAFVEYLNKNKTP 235 TE + L R RELSFLN G+ I L D R G F GG + FV YL+++K P Sbjct: 180 TTEVSFSTLENRFRELSFLNPGLRISLLDMRKGSSTGKVVFFSSGGTEEFVAYLDRSKQP 239 Query: 236 IHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNA 295 IH D I ++V++QWND + EN+ CFTNNI Q+DGGTHLA R+AMTR ++ Sbjct: 240 IHSTPIRVVGGVDSIAIDVSMQWNDSYYENVLCFTNNIKQKDGGTHLAALRSAMTRVMHN 299 Query: 296 YMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNE 355 Y+ KE KK KV +G+D REGL A++SVK+PDPKFSSQTK+KL+SSEVK +E+ +++ Sbjct: 300 YIVKENLIKKDKVVVSGEDVREGLSAILSVKLPDPKFSSQTKEKLISSEVKPVIEKIVSD 359 Query: 356 LLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDP 415 LA +L ENP+ A+++ K++++A AREAA++AR++TRRKG L++ LPGKLADCQE+ P Sbjct: 360 ALASWLEENPSSARVIARKVVESALAREAAKKARDLTRRKGGLEITTLPGKLADCQEKSP 419 Query: 416 ALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALG 475 LSEL +VEGDSAGGSAKQGR+RK QA+LPL+GKILNVEK RF K++ S E+ LI ALG Sbjct: 420 ELSELLIVEGDSAGGSAKQGRDRKTQAVLPLRGKILNVEKTRFHKVIGSAEIGNLIAALG 479 Query: 476 CGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLY 535 IG +E+N DK+RYH IIIMTDADVDG HIRTLLLTFF+R IVERG++YIAQ PLY Sbjct: 480 TSIGEEEFNIDKIRYHKIIIMTDADVDGLHIRTLLLTFFFRYARPIVERGYLYIAQTPLY 539 Query: 536 KVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMIN 595 KV + + Y++DD A+++Y + + G L A+ G++L+++V + K++ Sbjct: 540 KVMRKGADVYLRDDAALEEYLLDRIVKGKELE-GANGNVYTGQSLKRVVQQCLVLSKILE 598 Query: 596 RMERRYPKAMLKELIYQPTLTEADLSDEQ---------TVTRWVNALVSELNDKEQHGSQ 646 + + R P +L+ + + L E+ TV R ++L E + G + Sbjct: 599 KFDYRIPLEILEVVFLCGEEADPHLLAERVALISFGAWTVVREDSSLFFE---RTFQGLR 655 Query: 647 WKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAF 706 +++ E + ++R D YP F GEY I AF Sbjct: 656 NRYEYSPLFVPEDLEKMAKIREAISDIFYPGFARF-NNGEYHSIL-------------AF 701 Query: 707 IERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVT 766 I + +R G+ +QR+KGLGEMNPEQLW TT+DP +R + +VT Sbjct: 702 IRDAD----------------SVARAGMVLQRFKGLGEMNPEQLWSTTLDPSNRTIFKVT 745 Query: 767 VKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 +++A ADQ+ + LMGDAV PRR FI NAL A+NID+ Sbjct: 746 IEEAAVADQMCSMLMGDAVGPRRDFIVNNALNASNIDV 783 >UniRef50_A3EQC0 DNA gyrase subunit B n=7 Tax=Bacteria RepID=A3EQC0_9BACT Length = 818 Score = 745 bits (1924), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/816 (48%), Positives = 548/816 (67%), Gaps = 24/816 (2%) Query: 5 YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIH 64 Y + I+VL+GL+AVR RPGMYIG T GLHH+V+E+VDN++DEALAGHC EI +TIH Sbjct: 11 YTAEHIRVLEGLEAVRVRPGMYIGSTGI-DGLHHLVYELVDNSVDEALAGHCSEIHITIH 69 Query: 65 ADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN 124 D SV+V D+GRGIPTG+H E+ SAAEV++TVLHAGGKF++N YKVSGGLHGVGVSVVN Sbjct: 70 PDRSVTVADNGRGIPTGMHAEQKRSAAEVVLTVLHAGGKFNNNLYKVSGGLHGVGVSVVN 129 Query: 125 ALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEY 184 ALS+ L L I + G IHRQ Y G P APLAV GET + GT++RFWP + T +F + Sbjct: 130 ALSETLFLEIHQNGLIHRQTYHKGTPDAPLAVFGETTQRGTIIRFWPDM-TIMETDQFSF 188 Query: 185 EILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFS 244 + LA R REL+FLN ++I L+D+ +E+ FH+EGG+++FV +LN+NK +H +F+ Sbjct: 189 DTLAHRFRELAFLNPVLTIHLKDEETLREETFHFEGGVQSFVSFLNENKKTLHDVLFFRK 248 Query: 245 TEKDGIGVEVALQWNDGFQ-ENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYS 303 T +DG EVA Q+ + + E + F NNI R+GGTH+ GFR A+T+T+N ++ ++ + Sbjct: 249 TLEDGSQFEVAFQYQESTENETVLGFANNIHTREGGTHVRGFRTAITKTINRFIREKQLN 308 Query: 304 KKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLE 363 K +V G+D REGL ++SV++P P+F QTK KL SS V A+E ++E L E E Sbjct: 309 KGEEVR--GEDVREGLTGIISVRIPGPQFEGQTKAKLGSSWVAGAMESFLSEALQEKFEE 366 Query: 364 NPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLV 423 +P AK + K + A+AREAAR+A+++ +RK L+ + LPGKLADCQE DPA SELY+V Sbjct: 367 DPLTAKKIAEKAVLTAQAREAARKAKDLAKRKNVLEGSNLPGKLADCQESDPAKSELYIV 426 Query: 424 EGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR-FDKMLSSQEVATLITALGCGIGRDE 482 EGDSAGGSAKQGR+R+ QAILPLKGKILNVEK+R +K +++ EV LITA+GCG+G +E Sbjct: 427 EGDSAGGSAKQGRDRRFQAILPLKGKILNVEKSRGIEKFITNDEVRALITAVGCGLGEEE 486 Query: 483 YNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQ 542 ++ KLRYH IIIMTDADVDG+HIRTLLLTFF+R M +++ VYIAQPPLYKV G+Q Sbjct: 487 FSEKKLRYHKIIIMTDADVDGAHIRTLLLTFFFRHMNPLIDGQFVYIAQPPLYKVSYGRQ 546 Query: 543 EQYIKDDEAMDQYQISIALDGATLHTNASAPALA-GEALEKLVSEYNATQKMINRMERRY 601 E+Y+ +DEA+ Y + +A + + LA EA+ KL+ + +++ +R Sbjct: 547 ERYLLNDEALQAYILELACADWMFYDEQAGHWLAREEAVAKLLVLVHFEEQVRAHAQRFG 606 Query: 602 PKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELN---DKEQHGSQWKFD---VHTNA 655 + +L+ + P L +E+ R V+ L E D + Q + D ++ Sbjct: 607 NEMLLRLIGMFPETGIELLKNEEAAQRLVSFLTGEYPGWVDGGRLAGQVERDPGMSESHP 666 Query: 656 EQNLFEPIVRVRTHGVDTDYPLDH----EFITGGEYRRICTLGEKLRGLLEEDAFI-ERG 710 E+ F + G ++ LDH + + G ++ + GLL F+ RG Sbjct: 667 EEEWFRIRFFTESLGYESRLVLDHYLLAQLLAGKRSLKLL----RQSGLLFPGGFVLRRG 722 Query: 711 ERRQPV--ASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVK 768 + + S + L +L R+ LSIQRYKGLGEMNPEQLWETTMDP R +L+V++ Sbjct: 723 AEGEEIRFRSPRELLSFLESPVRQKLSIQRYKGLGEMNPEQLWETTMDPSRRTLLKVSIP 782 Query: 769 DAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 D + AD++FTTLMG+ V PRR FIE++AL AN+DI Sbjct: 783 DYVEADRVFTTLMGEQVAPRREFIEKHALDVANLDI 818 >UniRef50_D0RQH0 DNA gyrase subunit B n=2 Tax=Bacteria RepID=D0RQH0_9RICK Length = 834 Score = 744 bits (1920), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/843 (48%), Positives = 545/843 (64%), Gaps = 62/843 (7%) Query: 5 YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIH 64 Y + SIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHC I+V I+ Sbjct: 11 YGADSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCDTIVVKIN 70 Query: 65 ADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN 124 DNSVSV D+GRGIP IH E +SAAEVIMT LHAGGKFD +YKVSGGLHGVGVSVVN Sbjct: 71 KDNSVSVSDNGRGIPVEIHKTEKISAAEVIMTQLHAGGKFDHKTYKVSGGLHGVGVSVVN 130 Query: 125 ALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEY 184 ALS+ L++ I R+GK + +E+G+ +APL G+++ GT V F PS E FT+ T+F Sbjct: 131 ALSKSLKVDIFRDGKKYFVEFENGITKAPLKEIGKSDLKGTNVTFLPSSEIFTD-TKFNL 189 Query: 185 EILAKRLRELSFLNSGVSIRLRDKRDGKED--HFHYEGGIKAFVEYLNKNKTPI------ 236 IL KRL+EL++LN G++I+L D+R K +F ++GGIK FV+ LNK K I Sbjct: 190 SILEKRLKELAYLNKGLNIQLSDERKEKAKILNFKFDGGIKEFVKDLNKLKNKIKNEDSQ 249 Query: 237 ----HPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRT 292 P YF + K+ I VE AL WN + EN+ CFTNNIPQ+DGGTHL GFR ++TR Sbjct: 250 FTLEEP--LYFQSNKNDIDVECALLWNSSYNENVLCFTNNIPQKDGGTHLLGFRNSITRL 307 Query: 293 LNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQ 352 +N Y + G KK KV+ GDD REGLI V+SVKVPDPKFSSQTK+KLVSSEV+ VE Sbjct: 308 INKYANDFGLLKKDKVTIVGDDVREGLICVLSVKVPDPKFSSQTKEKLVSSEVRPVVETI 367 Query: 353 MNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQE 412 NE ++ + +NP AK ++GKII AA ARE AR+ARE RRK A+D+ LPGKLADCQ Sbjct: 368 TNEKISLWFDQNPKIAKTIIGKIIQAAVAREVARKARESVRRKNAIDITSLPGKLADCQS 427 Query: 413 RDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILN--VE--------KARFDKML 462 D +EL++VEGDSAGGSAKQ RNR+ QA+LPL+GKILN VE K F KML Sbjct: 428 NDINKTELFIVEGDSAGGSAKQARNREFQAVLPLRGKILNTFVEAKNNSPDVKKVFSKML 487 Query: 463 SSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQ-MPEI 521 SS E+ TLI A+G G+ + + +KLRY I+IMTDADVDGSHIRTLLLTFF + E+ Sbjct: 488 SSNEIVTLINAIGTGV--EPFELEKLRYGKIVIMTDADVDGSHIRTLLLTFFNNKPFNEL 545 Query: 522 VERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIAL---DGATLHTNA-----SAP 573 +++GH+YIAQPPLYK+K GK Y+K++ +++ I +L + T N Sbjct: 546 IKKGHIYIAQPPLYKIKSGKTVNYLKNENDLEKLAIENSLKKIESVTFKNNKKFNYDKTF 605 Query: 574 ALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNAL 633 + L KL+ + ++++ ++ +I +TE + Q + A+ Sbjct: 606 IVQSYELYKLIKSIDGDKEILEQLSIVGAFTKKDNIIL---ITED--KNNQKKLGAIKAV 660 Query: 634 VSELNDK-EQHGSQWKFDVHTNAEQNLFEP---IVRVRTHGVDTDYPLDHEFITGGEYRR 689 LN E+ S+W Q LFE ++R + + LD F++ + Sbjct: 661 AENLNQNLEKDDSKW---------QGLFENDSFVLRREFYHELIEKRLDINFLSNNKVLT 711 Query: 690 ICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQ 749 + K+ + + I+ G+ V S + ++ +++ ++ LS+QR+KGLGEMNP++ Sbjct: 712 NLSKFNKIANIFQSSCVIKDGDVPHKVNSLIEFIEIIIEIGKKNLSLQRFKGLGEMNPDE 771 Query: 750 LWETTMDPESRRMLRVTVKD--------AIAADQLFTTLMGDAVEPRRAFIEENALKAAN 801 LWETT++PE+ +L+V + + + D++F TLMG+ V R+ FI NA+ +N Sbjct: 772 LWETTLNPENNSLLKVNYSELNGEISEPSSSDDEIFFTLMGEDVSKRKNFINSNAINVSN 831 Query: 802 IDI 804 +DI Sbjct: 832 LDI 834 >UniRef50_B5YGU1 DNA gyrase subunit B n=9 Tax=Bacteria RepID=B5YGU1_THEYD Length = 759 Score = 739 bits (1909), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/808 (49%), Positives = 547/808 (67%), Gaps = 74/808 (9%) Query: 4 SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTI 63 SY + IK+LKGL+ VR RP MYIG T GLHH+V+EVVDN++DEALAG C +I V + Sbjct: 19 SYKAEHIKILKGLEGVRTRPAMYIGSTGV-EGLHHLVYEVVDNSVDEALAGFCNKIEVRL 77 Query: 64 HADNSVSVQDDGRGIPTGIHPE--EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 H D S SV D+GRGIPT IHP+ E +A E+++T LHAGGKF+ +YKVSGGLHGVG+S Sbjct: 78 HTDGSCSVIDNGRGIPTEIHPDDPEKRTALEIVLTELHAGGKFESKAYKVSGGLHGVGLS 137 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTE 181 VVNALS+ LE+ +QR+GK+ RQ Y G+P + V G+TEKTGT ++F E F VTE Sbjct: 138 VVNALSEWLEVEVQRDGKVVRQKYCRGIPVTGVEVIGQTEKTGTKIKFKADPEIF-EVTE 196 Query: 182 FEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIF 241 F EILA R +ELS+LN G+ I L D+RDG + F EGGI +FVE LNK K P+HP Sbjct: 197 FSREILAHRFKELSYLNRGLKIILIDERDGYVEEFIKEGGIVSFVEDLNKGKKPLHPKPI 256 Query: 242 YFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEG 301 Y + +KD + VE+A+Q+N+G+ E I F NNI ++GGTHL GF++A+TRT+N+Y G Sbjct: 257 YITGQKDRVIVEIAIQYNEGYSEEILTFVNNINTKEGGTHLVGFKSALTRTINSYAMLNG 316 Query: 302 YSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYL 361 K+ K S +G+D REG++ V+SVK+P+P+F QTK KL +SEVK VE +NE L+ +L Sbjct: 317 LLKEGKESLSGEDVREGIVGVISVKIPEPQFEGQTKMKLGNSEVKGIVETILNEKLSRWL 376 Query: 362 LENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELY 421 ENP AK ++ K DAARAREAA++A+E+TRRKG L+ LPGKLADC E+DP+ +EL+ Sbjct: 377 EENPNYAKRIIEKAKDAARAREAAKKAKELTRRKGILEDTTLPGKLADCTEKDPSHAELF 436 Query: 422 LVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRD 481 +VEGDSAGGSAKQ R+R++QA+LPL+GKILNVEKAR DKML+S+E+ TLITA+G GIG++ Sbjct: 437 IVEGDSAGGSAKQARDRRSQAVLPLRGKILNVEKARIDKMLTSEEIKTLITAIGGGIGKE 496 Query: 482 EYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGK 541 + P+ +RYH II+MTDADVDG+HIRTLLLTFFYRQM ++E+G++YIAQPPLY++K+GK Sbjct: 497 HFEPENVRYHKIILMTDADVDGAHIRTLLLTFFYRQMLPLIEKGYLYIAQPPLYRIKRGK 556 Query: 542 QEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERR- 600 E+YI+ ++ ++ + IA+D + + ++ KL+ EY +++ ER+ Sbjct: 557 WERYIQTEDEFHEFLMDIAVDEISFIEESELS--TKKSFLKLLFEYG---RILENFERKG 611 Query: 601 ----YPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAE 656 Y + +L+ L +Q DL D +T+ Sbjct: 612 FSPFYIENILETLQFQQDNQIVDLRDFETL------------------------------ 641 Query: 657 QNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPV 716 QN+FE I ++ D +Y + RI T K + L E Sbjct: 642 QNIFEKIKLIQGIREDKNYII-----------RIKTEAVKTKSLWE-------------- 676 Query: 717 ASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQL 776 + + +D + ++GL+IQRYKGLGEMNPEQLWETTMDPE R +L+VTV+DA A+++ Sbjct: 677 -LYNKVMDAV----KKGLTIQRYKGLGEMNPEQLWETTMDPEKRTLLQVTVEDAQRANEI 731 Query: 777 FTTLMGDAVEPRRAFIEENALKAANIDI 804 FT LMGD VEPR+ FI +AL+ N+DI Sbjct: 732 FTILMGDEVEPRKEFIVRHALEVRNLDI 759 >UniRef50_Q9Z8R3 DNA gyrase subunit B n=80 Tax=cellular organisms RepID=GYRB_CHLPN Length = 805 Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/827 (47%), Positives = 524/827 (63%), Gaps = 54/827 (6%) Query: 4 SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTI 63 +YD+S+I VL+GL AVR+RPGMYIGDT TGLHH+V+EVVDN+IDEA+AG+C I V I Sbjct: 7 NYDASAITVLEGLQAVRERPGMYIGDTGI-TGLHHLVYEVVDNSIDEAMAGYCSRIDVRI 65 Query: 64 HADNSVSVQDDGRGIPTGIHPEEG------VSAAEVIMTVLHAGGKFDDNSYKVSGGLHG 117 D + + D+GRGIP +H E VSA EV++TVLHAGGKFD +SYKVSGGLHG Sbjct: 66 LEDGGIVIVDNGRGIPIEVHERESAKQGREVSALEVVLTVLHAGGKFDKDSYKVSGGLHG 125 Query: 118 VGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFT 177 VGVS VNALS+KL + ++ K ++ + G+P PL +++ GT + F+P + F+ Sbjct: 126 VGVSCVNALSEKLVATVFKDKKCYQMEFSRGIPVTPLQYVSVSDRQGTEIVFYPDPKIFS 185 Query: 178 NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDH--FHYEGGIKAFVEYLNKNKTP 235 T F+ IL KRLREL+FLN G++I D RD D F YEGGI++FV YLN+NK Sbjct: 186 TCT-FDRSILMKRLRELAFLNRGITIVFEDDRDVSFDKVTFFYEGGIQSFVSYLNQNKES 244 Query: 236 IHPNIFYFSTEKDG----IGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTR 291 + Y + G I E ALQWN G+ E +Y + NNIP R GGTHL GF A+TR Sbjct: 245 LFSEPIYICGTRVGDDGEIEFEAALQWNSGYSELVYSYANNIPTRQGGTHLTGFSTALTR 304 Query: 292 TLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQ 351 +N Y+ +K K++ TG+D REGL AV+SVKVP+P+F QTK KL +S+V S +Q Sbjct: 305 VINTYIKAHNLAKNNKLALTGEDIREGLTAVISVKVPNPQFEGQTKQKLGNSDVSSVAQQ 364 Query: 352 QMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQ 411 + E L + ENP A+++V K+ AA+AREAA++ARE+T RK ALD A LPGKL DC Sbjct: 365 VVGEALTIFFEENPQIARMIVDKVFVAAQAREAAKKARELTLRKSALDSARLPGKLIDCL 424 Query: 412 ERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLI 471 E+DP E+Y+VEGDSAGGSAKQGR+R+ QAILP++GKILNVEKAR K+ +QE+ T+I Sbjct: 425 EKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKIFQNQEIGTII 484 Query: 472 TALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQ 531 ALGCGIG D +N KLRY IIIMTDADVDGSHIRTLLLTFFYR M ++E VYIAQ Sbjct: 485 AALGCGIGADNFNLSKLRYRRIIIMTDADVDGSHIRTLLLTFFYRHMTALIENECVYIAQ 544 Query: 532 PPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQ 591 PPLYKV K K +YI ++ MD Y + + + +++ ++ L GEALE ++ + Sbjct: 545 PPLYKVSKKKDFRYILSEKEMDSYLLMLGTNESSILFKSTERELRGEALESFINVILDVE 604 Query: 592 KMINRMERR-YPKA----MLKELIYQPTLTEADLSDEQTVTRWV-------NALVSELND 639 IN +E++ P + M KE I P A + Q R++ AL E Sbjct: 605 SFINTLEKKAIPFSEFLEMYKEGIGYPLYYLAPATGMQG-GRYLYSDEEKEEALAQEETH 663 Query: 640 KEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRG 699 K + +K V + + L E + + ++ + P +E + G E C Sbjct: 664 KFKIIELYKVAVFVDIQNQLKEYGLDISSYLI----PQKNEIVIGNEDSPSCNYS----- 714 Query: 700 LLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPES 759 + E+ +++L R+G+ IQRYKGLGEMN +QLW+TTM+PE Sbjct: 715 ----------------CYTLEEVINYLKNLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQ 758 Query: 760 RRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENAL--KAANIDI 804 R ++ V++KDA+ AD +FT LMG+ V PRR FIE +AL + N+DI Sbjct: 759 RTLIHVSLKDAVEADHIFTMLMGEEVPPRREFIESHALSIRINNLDI 805 >UniRef50_C3XDF7 DNA gyrase subunit B n=5 Tax=Campylobacterales RepID=C3XDF7_9HELI Length = 775 Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/810 (46%), Positives = 542/810 (66%), Gaps = 46/810 (5%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 + Y + +IKVLKGL+AVRKRPGMYIGDT+ GLHHM++EVVDN+IDEA+AG CK I + Sbjct: 5 TKEYLADNIKVLKGLEAVRKRPGMYIGDTNT-NGLHHMIYEVVDNSIDEAMAGFCKNIKI 63 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 T+ S ++DDGRGIP +HP E + AA V++TVLHAGGKFD ++YKVSGGLHGVGVS Sbjct: 64 TLTDKGSAIIEDDGRGIPVDMHPTENMPAATVVLTVLHAGGKFDKDTYKVSGGLHGVGVS 123 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTE 181 VVNALS KL + I + KI++Q +E G+P L + GET+K GT + F+P E +TE Sbjct: 124 VVNALSCKLIMTIYKNNKIYKQEFEKGIPTTELEIIGETKKHGTTIEFFPDPEIM-EITE 182 Query: 182 FEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIF 241 F+ IL +R +E+++L G+ IR +D+RDG + FH+EGG+ F+E +NK KT I + Sbjct: 183 FDSNILTRRFKEMAYLTHGIKIRFKDERDGSDTTFHFEGGLSQFIEDINK-KTLITQILS 241 Query: 242 YFSTEKD-GIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKE 300 + +TE + +E+AL +N+G+ E + F NNI DGGTH AGFRA ++R + Y++ Sbjct: 242 FEATENEYDSEIEIALAYNEGYDEKVLSFVNNIRTPDGGTHEAGFRAGLSRAILNYIEAN 301 Query: 301 GYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEY 360 +++ V GDD REGL+A+V+ K+ DP+F QTK KL SS VK V++ E ++++ Sbjct: 302 ANTREKDVKVLGDDVREGLVAIVATKIMDPQFEGQTKGKLGSSFVKGIVQKLTYEKISKF 361 Query: 361 LLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSEL 420 ENPT AK+++ K++ AAR REAA+RAR++TR+ + ++ LPGK ADCQ +DP+ E+ Sbjct: 362 FEENPTQAKLIMQKVLIAARGREAAKRARDLTRKDNKVSVSTLPGKFADCQSKDPSECEI 421 Query: 421 YLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR 480 YLVEGDSAGGSAKQGR+R+ QAILPL+GKILNVEK+R D +L S+E+ +ITA GCGIG Sbjct: 422 YLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKSRLDTILKSEEIKNMITAFGCGIG- 480 Query: 481 DEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKG 540 DE+N +KLRYH IIIMTDADVDGSHI+TLL+TFFYR +V+ G++YIAQPPLYK K+ Sbjct: 481 DEFNEEKLRYHKIIIMTDADVDGSHIQTLLMTFFYRYFKPLVQGGYIYIAQPPLYKYKRN 540 Query: 541 KQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALE--KLVSEYNATQKMINRME 598 K+E Y+KDD+A+ + I ++ H N E L+ K+++ Y ++++N +E Sbjct: 541 KKEVYLKDDKALSDFLIENGIE----HFNFKGIG-HNELLQILKIIAHY---RQLVNDLE 592 Query: 599 RRYP-KAMLKELIYQPTLTEADLSDEQTVTRWVNA--LVSELNDKEQHGSQWKFDVHTNA 655 RRY + +L+ L+ E D D +++++ + + L + N ++H + + NA Sbjct: 593 RRYSVQYVLRYLVEN----ELDTHDLESLSKNIESYLLSKQYNVLKKHIDE--VSITLNA 646 Query: 656 EQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRIC-TLGEKLRGLLEEDAFIERGERRQ 714 + NL +++ + L H+ I+ E +RI + E+ LE I Sbjct: 647 QTNLGITEIKITRN-------LFHD-ISFKECKRIYQKITERELEFLEGKDII------- 691 Query: 715 PVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAAD 774 L+ + + +R+ I RYKGLGEMN E+LWETTM P++R +++V ++D AD Sbjct: 692 ------TGLEEIEEATRKKGDISRYKGLGEMNKEELWETTMSPQNRTLVQVKIEDDEMAD 745 Query: 775 QLFTTLMGDAVEPRRAFIEENALKAANIDI 804 ++F MGD VEPRR +I+++A N+D+ Sbjct: 746 EMFNIFMGDEVEPRRQYIQKHARDVKNLDV 775 >UniRef50_O33367 DNA gyrase subunit B n=6 Tax=Bacteria RepID=GYRB_MYXXA Length = 815 Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/810 (48%), Positives = 518/810 (63%), Gaps = 22/810 (2%) Query: 5 YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIH 64 Y + SI L+G +AVRKRPGMYIGDT GLH +V+EVVDNA+DE+LAGHC +I V IH Sbjct: 18 YGTDSITKLEGREAVRKRPGMYIGDTM-AYGLHKLVYEVVDNAVDESLAGHCTDIEVVIH 76 Query: 65 ADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVV 123 D S+SVQD+GRGIP G HP+ G EV++T LHAG KF + +YKVSGGLHGVGV+ V Sbjct: 77 VDGSLSVQDNGRGIPVGPHPKFPGKDTLEVVLTELHAGSKFGNGAYKVSGGLHGVGVTCV 136 Query: 124 NALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFE 183 N LS+ ++ + R G ++ Q Y GVP P G T+K GT + F P T + EF Sbjct: 137 NFLSEWFKVRVHRNGIVYEQAYAQGVPDTPPREVGTTDKRGTHIAFKPD-ATVMELVEFN 195 Query: 184 YEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYF 243 +E L++RLREL+FLN+G+ I +RD+R KE F ++GGI +FVEYLNK+K +H F Sbjct: 196 FETLSQRLRELAFLNAGLHIVVRDERTNKEHDFKFDGGISSFVEYLNKSKQTLHDKPISF 255 Query: 244 STEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYS 303 STE++G+ +++A+QWNDG+ E IY F NNI +GG+HL+GF+AA+TRTLN+Y +K Sbjct: 256 STEREGVMLDIAMQWNDGYDERIYTFANNINTHEGGSHLSGFKAALTRTLNSYAEKGSLW 315 Query: 304 KKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLE 363 K K + TG+DAREGL AV+SVK+ +P+F QTK KL +SEVK VEQ +N+ L +L E Sbjct: 316 KDLKETPTGEDAREGLSAVISVKLTNPQFEGQTKTKLGNSEVKGLVEQMVNDQLGSFLEE 375 Query: 364 NPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLV 423 P AK VV KI DA RAR AAR+ARE RRKG LD GLPGKLADCQ RDP SELY+V Sbjct: 376 TPMVAKKVVAKIGDACRARLAARKARETVRRKGVLDGGGLPGKLADCQIRDPNESELYIV 435 Query: 424 EGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEY 483 EGDSAGGSAKQGR+R+NQAILPL+GKILNVEK +ML+S E+ TLITALG GIG ++Y Sbjct: 436 EGDSAGGSAKQGRDRRNQAILPLRGKILNVEKL-LREMLTSAEIVTLITALGNGIGAEDY 494 Query: 484 NPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQE 543 +P+K RYH I +MTDADVDGSHIRTLLLT + R YKV + K++ Sbjct: 495 DPEKARYHRIFLMTDADVDGSHIRTLLLTSSSGRCRSSCRRAISTSRSRRSYKVTRNKKD 554 Query: 544 QYIKDDEAMDQYQISIALDGATLHTNAS--APALAGEALEKLVSEYNATQKMINRMERRY 601 QY+KD+ A+++Y + IA + A + T A LEK+++ +K R + R Sbjct: 555 QYVKDEHALNEYLLKIASEHARVLTPGGELGGAELKALLEKVITYEERLEKQAKRRDARV 614 Query: 602 PKAMLK-ELIYQPTLTEADLSDEQTVTRWVNALVSELNDK-EQHGSQWKFDVHTNAEQNL 659 A+++ + TLT R + + + W T Sbjct: 615 VDALVQGARLSAETLTGRGCPGGGGEGRLMTPSSAACRTCWAACATSWCRTPSTTPRSWC 674 Query: 660 FEPIVRVRTHGVDTDYPLDHEFITGGEYRRICT-----LGEKLRGLLEEDAFIERGERRQ 714 P R+ P T RR T E LRG + RG Sbjct: 675 STP-TRME--------PCGRRCSTTPSCRRRSTWSCRLCAEHLRGAGQGAVQGPRGRGEI 725 Query: 715 PVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAAD 774 V S ++ L + K+++RGL +QRYKGLGEMNPEQLW+TTM+P +R +L+V V+DA+ +D Sbjct: 726 TVFSVQEVLAAVRKDAQRGLGLQRYKGLGEMNPEQLWDTTMNPATRTLLQVRVEDAVESD 785 Query: 775 QLFTTLMGDAVEPRRAFIEENALKAANIDI 804 ++F+ LMG+AVEPRR FIE NAL N+DI Sbjct: 786 EIFSLLMGEAVEPRREFIERNALDVQNLDI 815 >UniRef50_B1ZTK2 DNA gyrase subunit B n=194 Tax=cellular organisms RepID=B1ZTK2_OPITP Length = 861 Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/859 (46%), Positives = 534/859 (62%), Gaps = 70/859 (8%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 + +YD+S I+ L+GL+ VRKRP MYIGDT++ GLHH VFEVVDN++DEALAG I+V Sbjct: 17 AEAYDASKIQKLEGLEGVRKRPDMYIGDTNE-RGLHHCVFEVVDNSVDEALAGFASLIVV 75 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 TIH D S S++DDGRGIP +HP + A E+++T LHAGGKF +Y+VSGGLHGVG Sbjct: 76 TIHLDGSCSIEDDGRGIPVDMHPVYKIPALELVLTNLHAGGKFGKGAYQVSGGLHGVGAK 135 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTE 181 VNA+S+ E ++R GK+++ +E G+ + V G+T+KTGT + F P E F E Sbjct: 136 CVNAVSEWFEAEVRRGGKVYQMRFEQGITTQKMQVIGDTKKTGTKITFKPDPEIFKTTRE 195 Query: 182 FEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIF 241 F+YEIL+KRLREL+FLN GV I L D+R K D F++ GI FV YLN+NK +H Sbjct: 196 FQYEILSKRLRELAFLNPGVHIELADERSQKGDRFYFRDGITEFVRYLNQNKNVVHDKPI 255 Query: 242 YFS----TEKDG----IGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTL 293 FS E + I V+V++Q+ND + + ++ + N+I +GGTHL+GFR A+TR + Sbjct: 256 TFSDSVPNETNAALPNIVVDVSMQYNDSYNDQVFAYANSIYNIEGGTHLSGFRTALTRVV 315 Query: 294 NAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQM 353 N + K+ S TGDD REGL+AV+SVKVP+P+F QTK KL + E+ V++ + Sbjct: 316 NNFARANNLLKEKDPSITGDDVREGLVAVISVKVPEPRFEGQTKTKLSNGEIDGIVQRIV 375 Query: 354 NELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQER 413 E L Y N AK ++ K ++AA A R T RKGAL GLPGKLADC ER Sbjct: 376 GEKLRFYFEANTNIAKRIIDKTLNAA-RAREAARKARETVRKGALSGGGLPGKLADCSER 434 Query: 414 DPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITA 473 DPAL ELY+VEGDSAGGSAKQGR+R+ QAILPL+GK++NVEKAR DK+L+++E+ TLITA Sbjct: 435 DPALCELYIVEGDSAGGSAKQGRDRRYQAILPLRGKVINVEKARLDKVLANEEIRTLITA 494 Query: 474 LGCGIGRDE----YNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 G GIG E ++ DK RYH +IIMTDADVDGSHIRTLLLTF YRQM + +RG VYI Sbjct: 495 FGTGIGDHEGDGAFDGDKARYHKVIIMTDADVDGSHIRTLLLTFLYRQMRGLFDRGFVYI 554 Query: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNA 589 AQPPLYK+K+ K+EQYI +D+ +++ + + + L A A ++K+V A Sbjct: 555 AQPPLYKIKRKKREQYIDNDDQLNRILLELGSEDVVLTRIADQHVFAPAQIDKIVENLAA 614 Query: 590 TQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQH------ 643 +K+ + RY A+ + L Q +T A + R++ A + E N KE H Sbjct: 615 LEKLGAGVT-RYGAALSEYLDQQDHVTHA-------LPRYI-ARIREGN-KESHEFLRDE 664 Query: 644 GSQWKFDVHTNAEQNLFEPIVRVRTHGVDT--DYPLD----------------------H 679 ++ KF + ++FE V +G T P++ H Sbjct: 665 AARSKFVQDHGLDADMFEQPDNVVPNGTGTASGLPVNGTTAGVNEPPRKPAATPKRITLH 724 Query: 680 EFI--------------TGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDW 725 E TG E R E+ R L+ E+A ++ E R + S + + Sbjct: 725 EIFESTEMAKLLKAIAATGLEINRFGAT-EEARYLITENAG-QKSESRIELHSPLEIVTE 782 Query: 726 LVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAV 785 + R+GLSIQRYKGLGEMNP+QL+ETTMDPE RR+L+V++ DA AD LFT LMGD V Sbjct: 783 IRANGRKGLSIQRYKGLGEMNPKQLFETTMDPEKRRLLKVSINDAAKADALFTLLMGDEV 842 Query: 786 EPRRAFIEENALKAANIDI 804 PRR FIE+NAL +D+ Sbjct: 843 PPRRQFIEDNALNVQYLDV 861 >UniRef50_C1DUC4 DNA gyrase subunit B n=5 Tax=Bacteria RepID=C1DUC4_SULAA Length = 809 Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/814 (46%), Positives = 520/814 (63%), Gaps = 29/814 (3%) Query: 5 YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIH 64 Y + +I+ + GLD VR RP MYIGD + GLHH+V+E++DNA+DEA+AG+ K I V IH Sbjct: 11 YSAEAIQAVTGLDHVRARPAMYIGDIGE-RGLHHLVWEILDNAVDEAMAGYAKNITVIIH 69 Query: 65 ADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN 124 D SV+V+DDGRGIP IHPE + A E++ T+L AGGKF +Y+ SGGLHGVG SVVN Sbjct: 70 QDGSVTVEDDGRGIPVDIHPEFKIPAVEMVFTILGAGGKFSKKAYQYSGGLHGVGASVVN 129 Query: 125 ALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEY 184 ALS L + + R GKI+RQ Y +G P PL V G+T K GT V F P F T ++ Sbjct: 130 ALSSWLVVEVYRNGKIYRQEYSYGKPVYPLKVVGDTTKRGTKVTFKPDDSIFETTT-IKF 188 Query: 185 EILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFS 244 +I+ KR+REL+FLN GV + D+R ++ F++E GI FV LN+ K P+ + Y Sbjct: 189 DIIQKRVRELAFLNPGVRFVVIDERKDIKEEFYFENGIVDFVRVLNQAKEPLFDEVIYVK 248 Query: 245 TEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSK 304 EKDG+ VEVA Q+ + E I F NNI +GGTH++GFRAA+TR++N + K Sbjct: 249 GEKDGVLVEVAFQYTKSYNEVIESFVNNIKTVEGGTHVSGFRAALTRSMNKTLSGMKLPK 308 Query: 305 KAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLEN 364 + K +GDD REGL AV+SVKVP+P+F QTK KL + +VK VE + + L EY +N Sbjct: 309 ELKSGVSGDDLREGLTAVISVKVPEPQFEGQTKTKLGNQDVKRIVESVVGDYLLEYFEKN 368 Query: 365 PTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVE 424 A + K I+AA AREAAR+A+E++RRK L+ + LPGKLADC E DP L EL++VE Sbjct: 369 KDIALKIAEKAIEAAIAREAARKAKEISRRKSFLEDSSLPGKLADCSESDPQLCELFIVE 428 Query: 425 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIG----- 479 G+SAGGSAKQGR+R+ QAILPLKGKILNVEKAR DK+LS++E+ ++ A+G GIG Sbjct: 429 GESAGGSAKQGRDRRTQAILPLKGKILNVEKARIDKILSNEEIRAIVNAIGTGIGLPIKS 488 Query: 480 -------RDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQP 532 + ++ KLRYH II+M DADVDGSHI TLLLT FYR P+I+E GH+YIAQP Sbjct: 489 EDEEKKEDEGFDLSKLRYHKIILMADADVDGSHITTLLLTLFYRFFPQIIENGHLYIAQP 548 Query: 533 PLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLH-TNASAPALAGEALEKLVSEYNATQ 591 PLYK+KKG+ E Y+KDDE + + I A D + N S L + + KL EY + Sbjct: 549 PLYKLKKGRSEIYVKDDEELSKIVIDFATDEIAIEGKNFSKSQL--KDIAKLSKEY---K 603 Query: 592 KMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDV 651 + + +R K ++ L+ LTE D+ ++ V V L +L E + +KF Sbjct: 604 NLKESLYKRKDKVVIDTLL-SLNLTEDDIRNKGKVKEVVEFLRQKLPSYEIY---YKF-- 657 Query: 652 HTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAF-IERG 710 N E++ +E + +D +F++ Y ++ + L+ +L E I Sbjct: 658 --NPEESDYEIFIERVERFSKVVNKVDIDFLSSYAYLKVKEIENHLKSMLGELPVEISYK 715 Query: 711 ERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDA 770 ++ V + D + + G +QRYKGLGEMNPEQLWETTM+P++RR+L+VT++DA Sbjct: 716 QKSIKVEDLDDLYDVIFEAGMSGCEVQRYKGLGEMNPEQLWETTMNPKTRRLLQVTIEDA 775 Query: 771 IAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 AD++F+ LMG+ VEPRR FI + A + N+DI Sbjct: 776 ALADEVFSILMGEKVEPRREFIMKYAKEVRNLDI 809 >UniRef50_C5B4P3 DNA gyrase, subunit B n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B4P3_METEA Length = 816 Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/809 (47%), Positives = 517/809 (63%), Gaps = 28/809 (3%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 +YD+SSI+VL+GL+AVRKRPGMYIGDT+DGTG HHMV+EVVDN IDE LAGH + VT Sbjct: 8 GAYDASSIQVLEGLEAVRKRPGMYIGDTNDGTGFHHMVWEVVDNGIDECLAGHADRVTVT 67 Query: 63 IHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 ++AD SV+V D+GRGIP HP+ G SAAE+IMTVLHAGGKFD NSYKVSGGLHGVGVS Sbjct: 68 LNADGSVTVVDNGRGIPVDPHPKYPGKSAAEIIMTVLHAGGKFDQNSYKVSGGLHGVGVS 127 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180 VVNALS LEL I R G+ H +EHG P P+ G+ + + GT V F PSL TFT V Sbjct: 128 VVNALSSLLELTIWRGGREHYMAFEHGEPAGPIRDVGDAKGRRGTSVTFTPSLRTFTGVV 187 Query: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKR--DGKEDHFHYEGGIKAFVEYLNK----NKT 234 EF ++ +RLREL+FLNSGV I D+R D +YEGG+ +V Y+++ ++ Sbjct: 188 EFSAAVIERRLRELAFLNSGVRIVFHDRRVKDVDPVEMYYEGGVGEYVGYIDRTAGRDRV 247 Query: 235 PIHPNIFYF--STEKDG------IGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFR 286 P + S E +G +G+EVALQWND E++ FTNNIPQ DGGTH+ GF+ Sbjct: 248 IARPIVVRTERSVEVEGNPGPIPVGIEVALQWNDSTTESVLPFTNNIPQTDGGTHVQGFK 307 Query: 287 AAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVK 346 A+TR+ AY+D+ K K +GDD REGL A+VSVK+PDPKF+SQTK KLVS+EV Sbjct: 308 TALTRSFMAYVDRN--PLKTKTGLSGDDLREGLTAIVSVKLPDPKFASQTKAKLVSNEVS 365 Query: 347 SAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALD-LAGLPG 405 V+ + E LA +L ENP DA+ V+ K ++AA AREAA+RAREM RRK LD + LPG Sbjct: 366 GPVQSAVGEALATWLDENPADARKVIDKAVEAAAAREAAKRAREMVRRKTVLDDITSLPG 425 Query: 406 KLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQ 465 KLADC+ERDP+ SE+ +VEGDSAGGSAKQGR+ + QA+LPL+GKILN E AR D+++ + Sbjct: 426 KLADCRERDPSKSEILIVEGDSAGGSAKQGRDSEFQAVLPLRGKILNTETARLDRIMKNA 485 Query: 466 EVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERG 525 V TL+ ALGCGIG+ ++PDK+RYH IIIMTDADVDG+HIRTLLL FF+R MPE++ RG Sbjct: 486 AVGTLVKALGCGIGKGSHDPDKVRYHRIIIMTDADVDGAHIRTLLLAFFFRHMPELINRG 545 Query: 526 HVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVS 585 VY A+PPLY ++K ++ +++DD A+D+ + + +G A L+G L Sbjct: 546 FVYKAEPPLYSIEKKGRKTFLRDDVALDRELLRLGSEGIAFR-RADGAVLSGVDLAVAAE 604 Query: 586 EYNATQKMINRMERRYP-KAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHG 644 + A ++ ++ + + EL+ L D++ + R + A +S Sbjct: 605 QAKADARLFAAIDADVGLRPLADELVVSGWLDPVLWQDDEAMLR-LGAEISARMPSMMPA 663 Query: 645 SQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEED 704 S+W + + +R GV + + G + +++ + Sbjct: 664 SRWTSEAEAEGLR------MRWTVKGVGQERLVPRALCEGAVAHTLVRRRQQIAQVYGAG 717 Query: 705 AFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLR 764 A I PV D + + +GL+I RYKGLGEM +QL ETT+DP +R +++ Sbjct: 718 AAILGPAGEIPVPGPSSLFDHVRELGGKGLTIGRYKGLGEMTAQQLSETTLDPTARSIVQ 777 Query: 765 VTVKDAIAADQLFTTLMGDAVEPRRAFIE 793 + V+DA AA LMG EPR+ +E Sbjct: 778 IRVEDAEAARAKVDQLMGSKSEPRKHLLE 806 >UniRef50_UPI0001C311B1 DNA gyrase, B subunit n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C311B1 Length = 808 Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/811 (47%), Positives = 537/811 (66%), Gaps = 24/811 (2%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 S SYD+ I VL+GL+AVRKRPGMYIG T GLHH+V+EVVDN++DEALAGH + V Sbjct: 14 SPSYDAQDITVLEGLEAVRKRPGMYIGSTGI-RGLHHLVYEVVDNSVDEALAGHASAVDV 72 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNS-YKVSGGLHGVGV 120 TIH DNS++V D+GRGIP + +EG A EV++TVLHAGGKF D YKVSGGLHGVGV Sbjct: 73 TIHPDNSITVVDNGRGIPVAMMEKEGKPAVEVVLTVLHAGGKFGDGGGYKVSGGLHGVGV 132 Query: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVT 180 SVVNALS++L + I R+G Q Y G PQ L T +TGT + F P E ++ Sbjct: 133 SVVNALSEQLRVEIFRDGFAWSQDYVRGAPQGQLERGEATSETGTTITFLPDDEIMESL- 191 Query: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDH--FHYEGGIKAFVEYLNKNKTPIHP 238 +F++ L +RLRE +FL G+ I L D+R G+ H F Y+GGI+ FV YLN+NK P+ Sbjct: 192 DFDFTTLEERLRETAFLTRGLRISLTDER-GERRHVEFQYDGGIQDFVAYLNENKDPVQR 250 Query: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 I YFS+E D VEVA+QWN +QE+++ F NNI +GG+HL+GFR+A+TRT+N Y Sbjct: 251 KIVYFSSESDEGAVEVAMQWNSSYQESVFSFANNINTHEGGSHLSGFRSALTRTINKYAR 310 Query: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 ++G+ K+ + G+D REGL AV+S K+ +P+F QTK KL + ++ E +N+ L Sbjct: 311 EKGFLKERDANLAGEDVREGLTAVISAKLAEPQFEGQTKTKLGNPGMQGFTESIVNKGLD 370 Query: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 E+L ENP DA+ V+ K + AA+AR AAR+AR++TRRK AL+ + LPGKLADC +DPALS Sbjct: 371 EFLEENPQDARSVILKAVQAAQARSAARKARDLTRRKSALENSRLPGKLADCSVKDPALS 430 Query: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 E+++VEGDSAGGSAKQGR+R QAILPL+GKILNVE+AR DK+L + EV LITA+G G+ Sbjct: 431 EIFIVEGDSAGGSAKQGRDRSTQAILPLRGKILNVERARIDKVLGNNEVQALITAIGTGV 490 Query: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 RD+++ +K RYH II+MTDADVDG+HIRTL+LT +R+M +++ G +YIA+PPLYK+K Sbjct: 491 -RDDFDLEKARYHKIILMTDADVDGAHIRTLVLTLLFREMMPLIDAGFIYIAKPPLYKLK 549 Query: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEA----LEKLVSEYNATQKMI 594 +GK E+YI+ D +++ +S L+ ++ A EA +L+ +Y + Sbjct: 550 QGKNERYIEKDSELEEMLLSDKLERFSIFDRTGAETRLTEARWKRFTRLLKQYGGWASAL 609 Query: 595 NRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTN 654 R + + +++ + EA+++DE AL L E G+ + ++ Sbjct: 610 ----RALSSHDVVDFLHESGILEANVTDE-------GALARLLRQPEADGAAFSVELVGE 658 Query: 655 AEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAF-IERGERR 713 E L + +T T + + + EYR++ + ++L + F I G+ R Sbjct: 659 DEVELTVRSIERKTGHARTRH-VRRAMLQANEYRQLARVHDQLVQAVGTPPFDIRLGDHR 717 Query: 714 QPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAA 773 + SF++ ++ + RG+ I R+KGLGEMN EQL ETTMDP +R + RVT++DA AA Sbjct: 718 ETAVSFDELRSRVMDMAGRGVEINRFKGLGEMNAEQLRETTMDPATRTLARVTMEDAAAA 777 Query: 774 DQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 +++F+ LMGD VEPRR FIEENA N+D+ Sbjct: 778 ERVFSMLMGDQVEPRRNFIEENASLVTNLDV 808 >UniRef50_O67137 DNA gyrase subunit B n=13 Tax=cellular organisms RepID=GYRB_AQUAE Length = 792 Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/800 (45%), Positives = 513/800 (64%), Gaps = 19/800 (2%) Query: 5 YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIH 64 Y + +IK + GL+ VR RP MYIGD + GLHH+++E++DNA+DEA+AG+ + I VTIH Sbjct: 12 YTAEAIKAVSGLEHVRLRPAMYIGDIGE-RGLHHLIWEILDNAVDEAVAGYARNISVTIH 70 Query: 65 ADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN 124 DNSV+V+DDGRGIP IHPE G A E++ T+L AGGKF+ Y SGGLHGVG SVVN Sbjct: 71 RDNSVTVEDDGRGIPVDIHPETGKPAVEMVFTMLGAGGKFEKKVYTYSGGLHGVGASVVN 130 Query: 125 ALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEY 184 ALS+ L + + R+GKI+R ++ G PL V GET+K GT V F P E F TE ++ Sbjct: 131 ALSEWLIVEVYRDGKIYRMAFKRGEVVEPLHVVGETKKRGTKVSFKPDPEIF-ETTEIKF 189 Query: 185 EILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFS 244 +I+ KR+REL++LN V L D+R GK + ++ GI+ V+YLN+ K P+ +I Sbjct: 190 DIVEKRVRELAYLNPEVKFELTDERLGKHLIYKFDRGIEELVKYLNEGKEPLFKDIIRIQ 249 Query: 245 TEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSK 304 EK+G+ V++A Q+ ++E I F NNI +GGTH+ GFR+ +++ + +K Sbjct: 250 GEKEGVIVDIAFQYVKDYKERIESFVNNIKTVEGGTHVTGFRSGLSKAVIRMAQGLKLAK 309 Query: 305 KAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLEN 364 + K S TG+D REGL AVV+ KVP+P+F QTK KL + VK VE + L Y + Sbjct: 310 ELKKSFTGEDVREGLTAVVACKVPNPQFEGQTKTKLGNQNVKQIVESITYDFLTSYFEKK 369 Query: 365 PTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVE 424 K +V K I+AA AREAA++A+E+ RRK L+ LPGKLADC E DP+ E++LVE Sbjct: 370 RDVLKAIVEKAIEAALAREAAKKAKELVRRKSPLEEGVLPGKLADCSETDPSKCEIFLVE 429 Query: 425 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYN 484 GDSAGGSAKQ R+R+ QAILPL+GKI+NVEKAR DK+LS+ E+ +++ALGCGIG D + Sbjct: 430 GDSAGGSAKQARDRRYQAILPLRGKIINVEKARIDKVLSNDEIKAIVSALGCGIGED-LD 488 Query: 485 PDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQ 544 KLRYH II+MTDADVDGSHIRTLLLTFFYR MP++VE G+VYIA+PPLY+VKKGK+E Sbjct: 489 LKKLRYHKIILMTDADVDGSHIRTLLLTFFYRFMPKLVEEGYVYIAEPPLYRVKKGKKEI 548 Query: 545 YIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKA 604 YIKDD+ + + ++ + L +A GE L +L+ + + + + + Sbjct: 549 YIKDDKEFEHFLLNEIREKGRL-VDAREKEFKGEELVRLLIDLKDYEDAYRALVKSKGEN 607 Query: 605 MLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIV 664 ++ L+ + E DL + V + + EL D ++ D N + ++ I Sbjct: 608 LVNFLLTH-RVREEDLRNPARVKEITHLMEEELGD-------YRVDTKYNELEGAYDIIF 659 Query: 665 RVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALD 724 G T +D F++ YR + E + L F E ++ + S + D Sbjct: 660 YDDKLGTKT--IIDVNFLSSLSYREVL---EGIHLHLPVQVFFEN--KKVEINSLGEIYD 712 Query: 725 WLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDA 784 + +R G+ +QRYKGLGEMNPEQLWETTM+P++RR+ +V ++DA AD++FT LMG+ Sbjct: 713 KFMDFARSGMEVQRYKGLGEMNPEQLWETTMNPKTRRLKKVKIEDAAEADRIFTILMGEQ 772 Query: 785 VEPRRAFIEENALKAANIDI 804 VEPRR FIE A + ++D+ Sbjct: 773 VEPRREFIEAYAKEVKHLDV 792 >UniRef50_Q1MQ88 DNA gyrase subunit B n=6 Tax=Bacteria RepID=Q1MQ88_LAWIP Length = 799 Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/816 (46%), Positives = 521/816 (63%), Gaps = 44/816 (5%) Query: 5 YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIH 64 Y + SI +L+GL AVR RP MYIG TD GLHH+V+EV+DN+IDEA+AG C I V +H Sbjct: 12 YTADSITILEGLQAVRMRPAMYIGSTDT-RGLHHLVYEVIDNSIDEAMAGFCTRIDVVLH 70 Query: 65 ADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN 124 DNS++V+D+GRGIP IHP+EGV A +V+MT LHAGGKFD+++YKVSGGLHGVG+S VN Sbjct: 71 LDNSITVRDNGRGIPVDIHPKEGVPAVQVVMTKLHAGGKFDNDTYKVSGGLHGVGLSCVN 130 Query: 125 ALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEY 184 ALS++LE+ I R G +Q Y GVP L GE++ GT +RF E F TE+ Y Sbjct: 131 ALSEQLEVTILRGGYRWKQKYSRGVPLENLQRIGESDNHGTTIRFKADEEIF-ETTEYSY 189 Query: 185 EILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFS 244 E L +R EL++LN G+ I D+R + F EGGI FV+ +N ++ +H +I Sbjct: 190 ETLKRRFEELAYLNKGLEIHCTDERTSETHLFKAEGGIHQFVKDINTGESILH-SIISRE 248 Query: 245 TEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKE-GYS 303 + +G+ ++ ALQ+N G++EN F NNI ++GGTHLAGF+ A+TR +N Y+ + S Sbjct: 249 SIVEGVMIDFALQYNAGYKENTLTFANNIRTKEGGTHLAGFKTALTRAINGYIKGQPDLS 308 Query: 304 KKAK-VSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLL 362 KK K + +GDD REGL AV+SVK+P+P+F QTK KL +SE+ V + L Y Sbjct: 309 KKLKGQTLSGDDVREGLTAVLSVKLPNPQFEGQTKTKLGNSEIAGIVGGAVYTSLDTYFQ 368 Query: 363 ENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYL 422 ENP D + ++ K IDAARAREAARRA+E+ RRKGAL LPGKLADCQ ++PA SEL++ Sbjct: 369 ENPKDIRCIIDKAIDAARAREAARRAKELVRRKGALFDNALPGKLADCQSKNPAESELFI 428 Query: 423 VEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDE 482 VEGDSAGGSAKQGRN QAILPL+GKILN+E+ RFDKML+++E+ LITA+G GIG ++ Sbjct: 429 VEGDSAGGSAKQGRNPNIQAILPLRGKILNIERTRFDKMLANKEIKALITAMGAGIGEED 488 Query: 483 YNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQ 542 + KLRY+ I+IMTDADVDG+HIRTLLLTFF+R ++ERGH+YIAQPPLY+V K Sbjct: 489 TDYQKLRYYKIVIMTDADVDGAHIRTLLLTFFFRNYVGLIERGHLYIAQPPLYRVHNSKS 548 Query: 543 EQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLV-SEYNATQKMINRMERRY 601 E++IKDD +++ + LH +S + E+ + L S+ T K I + +R Sbjct: 549 EKFIKDDPSLNDF---------LLHRVSSELEIQTESGKLLKGSDIITTMKQIESISQRT 599 Query: 602 PKA--------MLKELIYQP-TLTEADLSDEQTVTRWVNAL---VSELNDKEQHGSQWKF 649 A + LI P LT LS + + ++N ++ N+ + G + F Sbjct: 600 KDAELAGISENLFMLLITSPKKLTSDVLSSLEEIQLYLNTSGYNITVENESHEDGDRL-F 658 Query: 650 DVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIE- 708 + N +G T P D F Y + + L + FI Sbjct: 659 TIFENK-------------NGHKTRIPAD--FFASKIYSSTWDVMDSLLTMCGGINFIVF 703 Query: 709 RGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVK 768 + + + + E+R+G++IQRYKGLGEMNPEQLW TTMDP++R +L+VT+ Sbjct: 704 HSGTSHTINDLFKLYQFTLDEARKGINIQRYKGLGEMNPEQLWVTTMDPQNRTLLQVTIN 763 Query: 769 DAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 DA A++ F LMG+ VEPRR FIE NAL ++DI Sbjct: 764 DAEEANETFEQLMGERVEPRREFIERNALNVRDLDI 799 >UniRef50_Q04WF3 DNA gyrase subunit B n=20 Tax=Bacteria RepID=Q04WF3_LEPBJ Length = 641 Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust. Identities = 314/558 (56%), Positives = 430/558 (77%), Gaps = 10/558 (1%) Query: 4 SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTI 63 SY +S IK+L+GL+AVRKRPGMYIG T D TGLH MV+EVVDN++DEA+AGHC EI ++I Sbjct: 7 SYSASQIKILEGLEAVRKRPGMYIG-TQDETGLHKMVYEVVDNSVDEAMAGHCTEIRISI 65 Query: 64 HADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVV 123 +N + V+D+GRGIP IHP++ +S EV+MT+LHAGGKF++++YKVSGGLHGVGVSVV Sbjct: 66 LPNNIIEVKDNGRGIPVDIHPDKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVV 125 Query: 124 NALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFE 183 NALS+ LE+ + ++GKI+ Q YE G+P +P+ + G++ + GT+VRF P FT V +F+ Sbjct: 126 NALSEYLEVEVHQKGKIYTQKYEKGIPVSPVEIKGDSSERGTIVRFKPDATIFTTV-DFQ 184 Query: 184 YEILAKRLRELSFLNSGVSIRLRDKRDGKE------DHFHYEGGIKAFVEYLNKNKTPIH 237 ++IL+ R REL+FLN G+ + + D+R G E + F + GGI +FVE++N+NK P+H Sbjct: 185 FDILSARFRELAFLNKGLVLIVEDRRRGAEGENLLRNEFQFSGGIVSFVEHINENKHPMH 244 Query: 238 PNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYM 297 + +F KD + E+++Q+++ + ENI+CFTNNI GGTHL GFRAA+TRTLN ++ Sbjct: 245 -KVIHFERNKDDVLAEISIQYSETYTENIFCFTNNINNNLGGTHLEGFRAALTRTLNDFL 303 Query: 298 DKEG-YSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNEL 356 K+ SKK +G+D +EGL AV+S+K+P P+F+SQTK+KLV++E+K ++ +E Sbjct: 304 KKDTTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLVNAEIKGIMQTLSSEG 363 Query: 357 LAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPA 416 L + ENP K ++ K I +A+AREAAR+AR++TRRK L+ GLPGKLADC E+DPA Sbjct: 364 LTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGGGLPGKLADCSEKDPA 423 Query: 417 LSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGC 476 SELYLVEGDSAGGSAKQGR+R QAILPLKGKILNVEKAR DK+LSS+E+ L++ALG Sbjct: 424 FSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILSSEEIRILVSALGT 483 Query: 477 GIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYK 536 GIG DE+N +K+RYH I+IMTDAD+DGSHIRTLLLTFF+R M ++E+G++Y+AQPPLY Sbjct: 484 GIGEDEFNINKIRYHKIMIMTDADIDGSHIRTLLLTFFFRYMRPVIEKGYLYVAQPPLYL 543 Query: 537 VKKGKQEQYIKDDEAMDQ 554 +K GK Y D+ ++ Sbjct: 544 IKHGKNSTYAYSDKEKEE 561 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 44/69 (63%), Positives = 55/69 (79%) Query: 736 IQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEEN 795 IQRYKGLGEMNPEQLWETTMDP +R +L+V + D + A++ F LMGD V+PR+ FIE N Sbjct: 573 IQRYKGLGEMNPEQLWETTMDPSNRVVLKVKLDDFVEAEETFNILMGDEVQPRKQFIEIN 632 Query: 796 ALKAANIDI 804 A K AN+D+ Sbjct: 633 AAKVANLDL 641 >UniRef50_B2URM5 DNA gyrase subunit B n=25 Tax=Bacteria RepID=B2URM5_AKKM8 Length = 852 Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/841 (43%), Positives = 514/841 (61%), Gaps = 46/841 (5%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 + Y ++ I L+GL+AVRKRPGMYIGD D+ GLHH VFEV+DN+IDE LAG+C +I + Sbjct: 19 HEYGAAQIDKLEGLEAVRKRPGMYIGDPDE-RGLHHCVFEVLDNSIDEHLAGYCSKIDIV 77 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 IH D S+S+ D+GRGIP IHP+ G+ A E+++T LHAGGKF +YK SGGLHGVG Sbjct: 78 IHVDGSISIVDNGRGIPVDIHPKFGIPAVELVLTNLHAGGKFGQGAYKYSGGLHGVGAKC 137 Query: 123 VNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGET--EKTGTMVRFWPSLETFTNVT 180 VNALS + ++R+GK ++ +E G PL G E TGT + F+P FT+ T Sbjct: 138 VNALSDWFKAEVRRDGKRYQIKFERGKTVEPLRTVGSCACEVTGTTITFFPDATIFTDTT 197 Query: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDG--KEDHFHYEGGIKAFVEYLNKNKTPIHP 238 EF+++ L RLREL+FLN G+ I L D+R+ + + F Y+ GI FV L NK I+ Sbjct: 198 EFKFDRLTTRLRELAFLNPGLVIELIDEREAPARRETFFYKDGIVEFVRQLGTNKEVINE 257 Query: 239 NIFYFS------TEKDG------IGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFR 286 + S E DG + V+V Q+N+ ++ NI CF N+I DGGTHL+GFR Sbjct: 258 DPISISGVRKVEVEYDGKKMEDDVLVDVVFQYNNTYETNILCFANSIYNGDGGTHLSGFR 317 Query: 287 AAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVK 346 A+TR +N Y G K+ S +G+D REGL+AV+SVK+P+P+FSSQTKDKLV++E++ Sbjct: 318 GALTRVINGYAKANGLLKEKDPSLSGEDVREGLVAVISVKMPNPRFSSQTKDKLVNTEIE 377 Query: 347 SAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGK 406 V + E + Y ENP AK ++ K I A A R T RK AL + GLPGK Sbjct: 378 GVVGNVVYEEIKTYFEENPAMAKKIIEKSI-TAARAREAARKARETVRKSALSIGGLPGK 436 Query: 407 LADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQE 466 LADC +RDPA EL++VEGDSAGGSAK GR+R+ QAILPL+GK+LNVEKAR DK L S+E Sbjct: 437 LADCSDRDPAKCELFIVEGDSAGGSAKMGRDRRTQAILPLRGKVLNVEKARLDKALGSKE 496 Query: 467 VATLITALGCGIGRDE----YNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIV 522 + +ITA+G GIG + + D++RYH IIIMTDADVDG+HIRTLLLTFF R MP++V Sbjct: 497 IQNMITAIGAGIGEGDDEASFKLDRVRYHKIIIMTDADVDGAHIRTLLLTFFCRHMPQLV 556 Query: 523 ERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEK 582 G++YIAQ PLY++ + K+E+Y++DD A+++ I +A++ TL + + + E L Sbjct: 557 RAGYLYIAQAPLYRIIRRKKEEYVQDDVALNRKLIELAVNDVTLRFADGSRSFSPEELSA 616 Query: 583 LVSEYNATQKMINRMERRYPKAMLKELI--------YQPTLTEADLSDEQTVTRW----- 629 ++ Q+ M+ + L++L+ + L + +E+ + + Sbjct: 617 ILETLVNLQRYTESMQAQ--GGSLEDLLSHRETNGEFPEFLVKVRCGNEEEILFFHDMEA 674 Query: 630 VNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEY-- 687 + A E D G+ + ++ N P R TH + + E Sbjct: 675 LTAFSEENRDLFIFGTPSEEELLENPLPEREGPSRRSITHELHEAKAITRALARLAELGI 734 Query: 688 --RRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEM 745 I ++ L L+E + E+ P+ S L+ ++ +RG+ I R+KGLGEM Sbjct: 735 PGNMIVSMDTPLFELVEGEG---DKEKVTPLFSVMDILESVISIGKRGVEITRFKGLGEM 791 Query: 746 NPEQLWETTMDPESRRMLRVTVKD--AIAADQLFTTLMGDAVEPRRAFIEENALKAANID 803 + + L++TTMDPE R +LRV + D A+ AD++FT LMGD VEPR+ +I ++AL N+D Sbjct: 792 DAKDLFKTTMDPERRELLRVILNDDNAVRADEMFTILMGDVVEPRKNYIVDHALNVRNLD 851 Query: 804 I 804 I Sbjct: 852 I 852 >UniRef50_A6G5S5 DNA gyrase subunit B n=11 Tax=Bacteria RepID=A6G5S5_9DELT Length = 872 Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/622 (56%), Positives = 437/622 (70%), Gaps = 19/622 (3%) Query: 4 SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTI 63 +YD SSI L+GL+AVRKRPGMYIGDTD TGLH MVFE++DN+IDEALAGHCK+I + I Sbjct: 34 AYDESSISHLEGLEAVRKRPGMYIGDTDV-TGLHKMVFEILDNSIDEALAGHCKQIQIVI 92 Query: 64 HADNSVSVQDDGRGIPTGIHPEEG--VSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 H D S+SV+DDGRGIPTG EG V AA + T LH GGKFD+ +YKVSGGLHGVGV+ Sbjct: 93 HEDESISVEDDGRGIPTGPMEVEGKMVPAAIAVFTKLHVGGKFDNAAYKVSGGLHGVGVT 152 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTE 181 VVNALS LEL I+REGK+ +E G L V GETE GT V F +T V Sbjct: 153 VVNALSDWLELEIKREGKVFTARFERGEVARELDVVGETEARGTKVTFHADPLIYTGV-R 211 Query: 182 FEYEILAKRLRELSFLNSGVSIRLRDKR------DGKEDHFHYEGGIKAFVEYLNKNKTP 235 +++ L+ R RELS+L GV+I L D R +E F EGG+ +FVE L +T Sbjct: 212 VDFDTLSSRFRELSYLTEGVNITLTDLRPTINGEKKREQSFDGEGGVASFVELLTAKRTR 271 Query: 236 IHPNI-------FYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAA 288 I I F F + +GV+VALQW D + E ++C+TNNI RDGGTHL G R + Sbjct: 272 IGAMIELRSQVPFEFEGQDHELGVQVALQWTDAYHEMVHCYTNNIANRDGGTHLTGLRTS 331 Query: 289 MTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSA 348 +TR +N Y + K K S G+D REGL+A++SVK PDPKF+SQTK+KLVSSEV + Sbjct: 332 LTRVVNGYAGDKNLLKGHKGSLAGEDVREGLVAIISVKHPDPKFNSQTKEKLVSSEVTAL 391 Query: 349 VEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLA 408 V + E L+ + E P DAK+VV K + AARAR AAR+ARE RKG LD LPGKLA Sbjct: 392 VGTAVTEALSRHFEEKPKDAKLVVEKALLAARARAAARKARETITRKGVLDGLSLPGKLA 451 Query: 409 DCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 468 DCQE+DP L+EL++VEGDSAGGSAKQGR+RK QAILPL+GKILNVEKAR DK+LSSQE+ Sbjct: 452 DCQEKDPELAELFIVEGDSAGGSAKQGRDRKVQAILPLRGKILNVEKARIDKILSSQEIV 511 Query: 469 TLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVY 528 TLITALG GIG D Y+ DKLRYH IIIMTDADVDGSHIRTLLLTFF+R EI+ERG++Y Sbjct: 512 TLITALGTGIGEDTYSIDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRHFVEIIERGYLY 571 Query: 529 IAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYN 588 +AQPPLYKVK GK+E+YIK++ A+D++ +S A+ A L A + E L ++ + Sbjct: 572 VAQPPLYKVKAGKKERYIKNEGALDEFIVSNAV--ADLELEIGGAAASKEVLAEVANAGI 629 Query: 589 ATQKMINRMERRYPKAMLKELI 610 ++ +ER + + +L+ ++ Sbjct: 630 RYNNVLRSLEREHRRGILEGIL 651 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 51/87 (58%), Positives = 65/87 (74%) Query: 718 SFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLF 777 S Q +D + + R GLSIQRYKGLGEMNP+QLWETTMDPE+R +L++ + + AD++F Sbjct: 786 SLMQVIDHVGEVGRSGLSIQRYKGLGEMNPDQLWETTMDPENRELLQIKIAEKDIADEVF 845 Query: 778 TTLMGDAVEPRRAFIEENALKAANIDI 804 T LMGD V PRR FI ENAL N+D+ Sbjct: 846 TVLMGDEVAPRREFITENALNTRNLDV 872 >UniRef50_Q9ZLX3 DNA gyrase subunit B n=50 Tax=Epsilonproteobacteria RepID=GYRB_HELPJ Length = 773 Score = 641 bits (1654), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/816 (43%), Positives = 522/816 (63%), Gaps = 60/816 (7%) Query: 4 SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTI 63 +Y S SIKVLKGL+ VRKRPGMYIGDT+ G GLHHMV+EVVDNA+DE++AG C I +T+ Sbjct: 3 NYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDTINITL 61 Query: 64 HADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVV 123 + S V+D+GRGIP IHP E + A V++T+LHAGGKFD+++YKVSGGLHGVGVSVV Sbjct: 62 TEEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSVV 121 Query: 124 NALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE---KTGTMVRFWPSLETFTNVT 180 NALS++L + I++EG+I+RQ +E G+P + L + G+T+ ++GT + F+P E+ V Sbjct: 122 NALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPD-ESVMEVV 180 Query: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNI 240 EF+ IL KR +E+++LN G+ I ++++ ++ + Y+ G+K FV+ K K + P I Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKISFKEEKTQLQETYFYKDGLKQFVKDSAK-KELLTPII 239 Query: 241 FYFST-EKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDK 299 + S E+ +EVAL + D + EN F NNI +GGTH AGF+ +++ + Y+D Sbjct: 240 AFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYIDN 299 Query: 300 EGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAE 359 +K+++ +D +EGLIAVVS+K+ +P F QTK KL SS ++ V + + + + + Sbjct: 300 NIKTKESR--PISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIHQ 357 Query: 360 YLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSE 419 +L ENP +AKI+ K + AA+AREA+++ARE+TR+K L + LPGKLADCQ +DP SE Sbjct: 358 FLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLESE 417 Query: 420 LYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIG 479 ++LVEGDSAGGSAKQGR+R QAILPLKGKILNVEK+ K+L S+E+ +ITA GCGI Sbjct: 418 IFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI- 476 Query: 480 RDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKK 539 ++ ++ ++LRYH IIIMTDADVDGSHI+TLL+TFFYR + ++E+GHV+IAQ PLYK KK Sbjct: 477 QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVFIAQAPLYKYKK 536 Query: 540 GKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMER 599 GK E Y+KD A+D + I ++ + + L K+ Y T + +E+ Sbjct: 537 GKTEIYLKDSVALDHFLIEHGINSVDIEGIGKNDLM---NLLKVARHYRYT---LLELEK 590 Query: 600 RYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDK-----------EQHGSQWK 648 RY +L+ L + +A D + + + + + LN + H K Sbjct: 591 RY--NLLEVLRFLIETKDALSLDMKVLEKSILEKLEGLNYQILRSFATEESLHLHAQTPK 648 Query: 649 FDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIE 708 V N + NLF+ ++ H Y++ L+E + ++ Sbjct: 649 GLVEFNLDDNLFKDVLFEEAHYT---------------YQK----------LMEYN--LD 681 Query: 709 RGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVK 768 E + +A E+ ++ +++G +IQRYKGLGEMNP LWETTM E+R ++++ ++ Sbjct: 682 FLENKDILAFLEEVENY----AKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIE 737 Query: 769 DAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 D D +F+ MGD VEPRRAFI+ +A +D+ Sbjct: 738 DLEKTDAVFSLCMGDEVEPRRAFIQAHAKDVKQLDV 773 >UniRef50_B6BRC2 DNA gyrase subunit B n=1 Tax=Candidatus Pelagibacter sp. HTCC7211 RepID=B6BRC2_9RICK Length = 686 Score = 637 bits (1643), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/583 (55%), Positives = 414/583 (71%), Gaps = 31/583 (5%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 N+Y + SIKVLKGL+AVRKRPGMYIGDTDDGTGLHHMV+EVVDN+IDEALAGHCK I V Sbjct: 5 NTYQADSIKVLKGLEAVRKRPGMYIGDTDDGTGLHHMVYEVVDNSIDEALAGHCKNINVR 64 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 I++D +++V DDGRGIP +H E SAAEVIMT LHAGGKFD +SYKVSGGLHGVGVSV Sbjct: 65 INSDGTITVNDDGRGIPVDMHKGEKKSAAEVIMTQLHAGGKFDHDSYKVSGGLHGVGVSV 124 Query: 123 VNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEF 182 VNALS+KL+L I R+GK H +++G APL + G+++ +GT + F PS E F+++ +F Sbjct: 125 VNALSEKLKLEINRDGKKHFIEFKNGEAIAPLKIVGKSKNSGTQITFLPSKEIFSSI-KF 183 Query: 183 EYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYL--------NKN 232 IL KR+REL+FLN G+ I D KE F ++GG+ FV +L NKN Sbjct: 184 SANILIKRMRELAFLNKGIKIIFTDASLKKEKVSEFKFDGGVLEFVNFLDEKREKLQNKN 243 Query: 233 KTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRT 292 + Y +KD I +E +L+WN + E+I+ +TNNI Q+DGGTHL GFR+A+TR Sbjct: 244 GNDLFKKPIYIEGKKDNIELECSLKWNASYAEDIFPYTNNIFQKDGGTHLLGFRSALTRV 303 Query: 293 LNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQ 352 +N Y ++ KK K++ +GDD +EGL V+S K+PDPKFSSQTKDKLVSSEV+ VE Sbjct: 304 VNKYANEHNLLKKNKLAISGDDIKEGLTCVLSTKIPDPKFSSQTKDKLVSSEVRMIVETV 363 Query: 353 MNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQE 412 +NE L+ + +NP+ AKI++ K+I AA AR+ AR+ARE RRKGAL+L+GLPGKLADCQ Sbjct: 364 VNEKLSIWFDQNPSVAKIILAKVIQAAMARDVARKARENVRRKGALELSGLPGKLADCQI 423 Query: 413 RDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNV----------------EKA 456 +EL++VEGDSAGGSAKQGRNR NQA+LPL+GKILN E+ Sbjct: 424 GKQEGTELFIVEGDSAGGSAKQGRNRANQAVLPLRGKILNTYVEDLSVKKNGNGDASEQQ 483 Query: 457 R---FDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTF 513 R KM+SS E+ TLI ALG E + LRY IIIMTDADVDGSHIR LLLTF Sbjct: 484 RTKALSKMISSNEIVTLINALGLDPKTQEIDLKDLRYGKIIIMTDADVDGSHIRALLLTF 543 Query: 514 FYRQ-MPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQY 555 F + +++E GHVY+AQPPL+K+ KG + YIKD+ ++ Y Sbjct: 544 FNNKPFNKLIENGHVYLAQPPLFKINKGTKGIYIKDELELENY 586 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 38/72 (52%), Positives = 51/72 (70%), Gaps = 1/72 (1%) Query: 734 LSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQ-LFTTLMGDAVEPRRAFI 792 ++IQR+KGLGEMNPE+LW TT+DPE+R +L+V + DQ L TLMG+ V R+ FI Sbjct: 615 MNIQRFKGLGEMNPEELWSTTLDPENRNLLQVQYSKDLKKDQSLIHTLMGNDVALRKDFI 674 Query: 793 EENALKAANIDI 804 NA+ N+DI Sbjct: 675 ISNAINVQNLDI 686 >UniRef50_O50627 DNA gyrase subunit B n=82 Tax=cellular organisms RepID=GYRB_BACHD Length = 637 Score = 632 bits (1629), Expect = e-179, Method: Compositional matrix adjust. Identities = 319/552 (57%), Positives = 411/552 (74%), Gaps = 3/552 (0%) Query: 4 SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTI 63 +YD S I+VL+GL+AVRKRPGMYIG T GLHH+V+E+VDN+IDEA+AG C EI V I Sbjct: 7 AYDESQIQVLEGLEAVRKRPGMYIGSTS-SRGLHHLVWEIVDNSIDEAMAGFCDEIGVVI 65 Query: 64 HADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVV 123 DNS++V D+GRGIP GIH + G A EVIMTVLHAGGKF YKVSGGLHGVG SVV Sbjct: 66 EEDNSITVTDNGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVV 125 Query: 124 NALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFE 183 NALS LE+ + REGK+H Q + GVP A L V G T++TGT + F P + FT T FE Sbjct: 126 NALSTMLEVEVHREGKVHYQKFHRGVPAADLEVIGTTDRTGTKIHFKPDGDIFTETTVFE 185 Query: 184 YEILAKRLRELSFLNSGVSIRLRDKRDG-KEDHFHYEGGIKAFVEYLNKNKTPIHPNIFY 242 Y+ LA RLREL+FLN G+ I++ D R+ K D FHYEGGI +FVE+LN+ + +H + Sbjct: 186 YDTLASRLRELAFLNKGLRIKITDMREEEKSDEFHYEGGIASFVEHLNRTRETLHETPIH 245 Query: 243 FSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGY 302 EK G+ VE+A+Q+NDGF NIY F NNI +GGTH +GF+ +TR +N Y K Sbjct: 246 IEGEKQGVYVEIAVQYNDGFTSNIYSFANNINTHEGGTHESGFKTGLTRVINDYARKHNL 305 Query: 303 SKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLL 362 K++ + TG+D REGL A++SVK+PDP+F QTK KL +SE ++ + E + +L+ Sbjct: 306 FKESDPNLTGEDVREGLTAIISVKIPDPQFEGQTKTKLGNSEARTITDSLFTEHFSRFLI 365 Query: 363 ENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYL 422 E+P A+ +V K + A+RAREAA++ARE+TRRK AL+++ LPGKLADC RD ++SE+Y+ Sbjct: 366 EHPQVARKLVDKGLMASRAREAAKKARELTRRKSALEVSSLPGKLADCSSRDASISEIYI 425 Query: 423 VEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDE 482 VEGDSAGGSAKQGR+R QAILPL+GKILNVEKAR DK+L++ E+ +ITALG GIG D+ Sbjct: 426 VEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILANNEIRAIITALGTGIG-DD 484 Query: 483 YNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQ 542 ++ +K RYH IIIMTDADVDG+HIRTL+LTFFYR M ++E G+VYIAQPPLYKV++GK Sbjct: 485 FDIEKARYHKIIIMTDADVDGAHIRTLILTFFYRYMRPLIEHGYVYIAQPPLYKVQQGKD 544 Query: 543 EQYIKDDEAMDQ 554 QY D + + Sbjct: 545 IQYAYGDAELQE 556 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 51/88 (57%), Positives = 65/88 (73%), Gaps = 2/88 (2%) Query: 717 ASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQL 776 A ++ L L +++ G IQRYKGLGEMNP QLWETTMDP R +L+VT++DA+ AD++ Sbjct: 552 AELQEILSQLPDKAKPG--IQRYKGLGEMNPSQLWETTMDPGQRTVLQVTLEDAMKADEI 609 Query: 777 FTTLMGDAVEPRRAFIEENALKAANIDI 804 F LMGD VEPRR FI+ENA N+DI Sbjct: 610 FEILMGDRVEPRRDFIQENARYVKNLDI 637 >UniRef50_Q1V1K8 DNA topoisomerase (ATP-hydrolyzing) chain B (DNA gyrase B) n=2 Tax=Candidatus Pelagibacter ubique RepID=Q1V1K8_PELUB Length = 685 Score = 629 bits (1623), Expect = e-178, Method: Compositional matrix adjust. Identities = 319/583 (54%), Positives = 416/583 (71%), Gaps = 30/583 (5%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 +++Y + SIKVLKGL+AVRKRPGMYIGDTDDGTGLHHMV+EVVDN+IDEALAGHCK I V Sbjct: 4 NSTYQADSIKVLKGLEAVRKRPGMYIGDTDDGTGLHHMVYEVVDNSIDEALAGHCKNIDV 63 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 I++D +++V+DDGRGIP +H E +SAAEVIMT LHAGGKFD +SYKVSGGLHGVGVS Sbjct: 64 KINSDGTITVRDDGRGIPVDMHKGEKMSAAEVIMTQLHAGGKFDHDSYKVSGGLHGVGVS 123 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTE 181 VVNALS+KL+L I R+G + ++ G +APL V G++++TGT + F PS E F+++ + Sbjct: 124 VVNALSEKLKLEIDRDGNRYFIEFKDGASKAPLKVIGKSKETGTQITFLPSKEIFSSI-K 182 Query: 182 FEYEILAKRLRELSFLNSGVSIRLRDKRDGKED--HFHYEGGIKAFVEYL--------NK 231 F I+ KR+REL+FLN G+ I + D KE F ++GG+ FV++L NK Sbjct: 183 FTPSIIIKRMRELAFLNKGIKITVNDLNQKKEKIIVFKFDGGVLEFVDFLDEKREKLVNK 242 Query: 232 NKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTR 291 + Y +KD I +E +L+WN + E+IY +TNNI Q+DGGTHL GFR+A+TR Sbjct: 243 TGNDLFKKPIYIEGKKDNIEIECSLKWNASYGEDIYPYTNNIYQKDGGTHLLGFRSALTR 302 Query: 292 TLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQ 351 +N Y + KK K++ +GDD +EGL V+S K+PDPKFSSQTKDKLVSSEV+ VE Sbjct: 303 VINKYATEHNLLKKNKLTISGDDIKEGLTCVISAKIPDPKFSSQTKDKLVSSEVRMIVES 362 Query: 352 QMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQ 411 ++E L+ + +NPT +KI++ K++ AA AR+ AR+ARE RRKGAL+L+GLPGKLADCQ Sbjct: 363 IVSEKLSIWFDQNPTLSKIILAKVMQAALARDVARKARENVRRKGALELSGLPGKLADCQ 422 Query: 412 ERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNV------------------ 453 +EL++VEGDSAGGSAKQGRNR NQA+LPL+GKILN Sbjct: 423 IGKQEGTELFIVEGDSAGGSAKQGRNRSNQAVLPLRGKILNTYVEEIVLKKNSNRDGSEH 482 Query: 454 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTF 513 KM+SS EV TLI ALG ++ + LRY IIIMTDADVDGSHIR LLLTF Sbjct: 483 RTKSLSKMMSSNEVVTLINALGLDPKVEDIDLKDLRYGKIIIMTDADVDGSHIRALLLTF 542 Query: 514 FYRQ-MPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQY 555 F + +++E GHVY+AQPPL+K+ KG + YIKD++ ++ Y Sbjct: 543 FNNKPFNKLIENGHVYLAQPPLFKINKGTKGIYIKDEKELEDY 585 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 43/103 (41%), Positives = 62/103 (60%), Gaps = 1/103 (0%) Query: 703 EDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRM 762 ED ++ + Q + + ++ + +SIQR+KGLGEMNPE+LW TT+DPE+R + Sbjct: 583 EDYILKNNKELQKIKKGTKEFTKAYEDEKSRMSIQRFKGLGEMNPEELWNTTLDPETRNL 642 Query: 763 LRVTVKDAIAADQ-LFTTLMGDAVEPRRAFIEENALKAANIDI 804 L+V I DQ L TLMG+ V R+ FI NA+ N+DI Sbjct: 643 LQVQYSKDIKKDQDLIHTLMGNDVALRKDFIVSNAINVQNLDI 685 >UniRef50_Q9X3Y6 DNA gyrase subunit B n=840 Tax=cellular organisms RepID=GYRB_BACAN Length = 640 Score = 629 bits (1622), Expect = e-178, Method: Compositional matrix adjust. Identities = 329/553 (59%), Positives = 421/553 (76%), Gaps = 3/553 (0%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 NSYD S I+VL+GL+AVRKRPGMYIG T G GLHH+V+E+VDN+IDEALAG+C EI V+ Sbjct: 9 NSYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINVS 67 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 I DNS+ V D+GRGIP GI + G A EVIMTVLHAGGKF YKVSGGLHGVG SV Sbjct: 68 IEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASV 127 Query: 123 VNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEF 182 VNALS +LE+ + REGKIH Q YE G+P A L V G+T++TGT+ RF P E F T + Sbjct: 128 VNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDTDQTGTITRFKPDPEIFQETTVY 187 Query: 183 EYEILAKRLRELSFLNSGVSIRLRDKRDGKED-HFHYEGGIKAFVEYLNKNKTPIHPNIF 241 E++ LA R+REL+FLN + + + DKR+ K+ FHYEGGIK++VE+LN++K PIH Sbjct: 188 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 247 Query: 242 YFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEG 301 Y KDGI VEV+LQ+N+G+ NIY FTNNI +GGTH GF+ A+TR +N Y K Sbjct: 248 YVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNS 307 Query: 302 YSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYL 361 K A + TG+D REGL A+VS+K P+P+F QTK KL +SE ++ E +E ++L Sbjct: 308 ILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFL 367 Query: 362 LENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELY 421 LENP A+ +V K AARAR AA++ARE+TRRK AL+++ LPGKLADC +DPA+SE+Y Sbjct: 368 LENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIY 427 Query: 422 LVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRD 481 +VEGDSAGGSAKQGR+R QAILPLKGKI+NVEKAR DK+LS+ EV T+ITA+G IG D Sbjct: 428 IVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGD 487 Query: 482 EYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGK 541 ++ +K RYH +IIMTDADVDG+HIRTLLLTFFYR M +I+E G++YIAQPPL+KV++GK Sbjct: 488 -FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKVQQGK 546 Query: 542 QEQYIKDDEAMDQ 554 + QY +++ +++ Sbjct: 547 KIQYAYNEKELEK 559 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 52/86 (60%), Positives = 63/86 (73%), Gaps = 2/86 (2%) Query: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 E+ L L + + G IQRYKGLGEMNP QLWETTMDPE R +L+V+++DAI AD+ F Sbjct: 557 LEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFE 614 Query: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 LMGD VEPRR FI+ENA N+DI Sbjct: 615 ILMGDKVEPRRNFIQENAKYVKNLDI 640 >UniRef50_A6DH73 DNA gyrase subunit B n=7 Tax=cellular organisms RepID=A6DH73_9BACT Length = 838 Score = 608 bits (1568), Expect = e-172, Method: Compositional matrix adjust. Identities = 305/575 (53%), Positives = 418/575 (72%), Gaps = 7/575 (1%) Query: 5 YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIH 64 Y + SI V+KGL+AVRKRP MYIGDT++ GLHH+V+EVVDN+IDEALAGHC I V +H Sbjct: 12 YGADSISVMKGLEAVRKRPSMYIGDTNE-RGLHHLVYEVVDNSIDEALAGHCNNITVKLH 70 Query: 65 ADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN 124 DNSV+V DDGRGIP IH EEG+ A E+++T LHAGGKFD +SYKVSGGLHGVGVS VN Sbjct: 71 IDNSVTVVDDGRGIPVNIHEEEGIPAVELVLTKLHAGGKFDKDSYKVSGGLHGVGVSCVN 130 Query: 125 ALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEY 184 ALS+ +E+ + R+ +H +E G+ + L G T TGT V F P E FT +++ Sbjct: 131 ALSEWMEVKVHRDETLHFIRFERGLTETSLKTIGHTNITGTEVIFKPDFEIFTETLIYKW 190 Query: 185 EILAKRLRELSFLNSGVSIRLRDKR--DG-KEDHFHYEGGIKAFVEYLNKNKTPIHPNIF 241 +ILAKRLREL+FLN G++I D+R DG + + F++ GGI FV++LN KT + + Sbjct: 191 DILAKRLRELAFLNPGITINFIDERAEDGERRETFYFPGGIGEFVKHLNDGKTVVTDTV- 249 Query: 242 YFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEG 301 FSTEKDG+ +V+ Q++DGFQENIY + NNI +GGTHLAGF+ A+T ++N+YM + Sbjct: 250 TFSTEKDGVTADVSFQYHDGFQENIYSYCNNIHTIEGGTHLAGFQTALTASINSYMKNDS 309 Query: 302 YSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYL 361 K K + +G D REGL A++SVKVP+P+F QTK KL ++EV+S V ++ E+L Sbjct: 310 KFKNEK-NVSGTDVREGLTAIISVKVPEPQFEGQTKTKLGNNEVRSIVRAIVSTSFNEFL 368 Query: 362 LENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELY 421 ENP AK+VV K + A RA AA RAR++ R+ L+ GKL+ C ++P E++ Sbjct: 369 EENPKAAKVVVEKALLANRASAAALRARQLIRKDNVLEGFADAGKLSGCSSKNPDECEIF 428 Query: 422 LVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRD 481 +VEGDSAGGSAKQGRN + QAILPL+GK++NVEKAR DK+ ++ E+ +LI+A+GCG+G + Sbjct: 429 IVEGDSAGGSAKQGRNSEVQAILPLRGKLINVEKARIDKVFANTEIGSLISAIGCGVG-N 487 Query: 482 EYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGK 541 E++ +K+RY I+IMTDADVDGSHI TLLLTFF+RQM ++E G++Y+AQPPLYKV + K Sbjct: 488 EFDVEKIRYKKIVIMTDADVDGSHIMTLLLTFFFRQMKPLIEAGYIYVAQPPLYKVVRRK 547 Query: 542 QEQYIKDDEAMDQYQISIALDGATLHTNASAPALA 576 +E+YIK+D ++ + + + +DG TL + L+ Sbjct: 548 REEYIKNDAMLNNFLLELGVDGITLENKLAGNTLS 582 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 54/123 (43%), Positives = 78/123 (63%), Gaps = 7/123 (5%) Query: 689 RICTLGEKLRGLLE-EDAFIE------RGERRQPVASFEQALDWLVKESRRGLSIQRYKG 741 ++ T+ L+ LE EDA E G P+ + Q + + E +GL +QRYKG Sbjct: 716 KLETVSLTLQHFLEPEDALAEPIFNLTDGNNDTPIFTLIQLFEAIKDEGSQGLKLQRYKG 775 Query: 742 LGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAAN 801 LGEMN +QLWETTMDP R +L+VT++DA+ A+++F+ LMGD VEPRR FIE+ + Sbjct: 776 LGEMNADQLWETTMDPTRRDLLQVTMEDAVEAERMFSLLMGDVVEPRRHFIEKYSTTLKE 835 Query: 802 IDI 804 +D+ Sbjct: 836 LDV 838 >UniRef50_D2R8B1 DNA gyrase, B subunit n=80 Tax=Bacteria RepID=D2R8B1_9PLAN Length = 830 Score = 607 bits (1565), Expect = e-172, Method: Compositional matrix adjust. Identities = 367/834 (44%), Positives = 507/834 (60%), Gaps = 51/834 (6%) Query: 5 YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIH 64 Y++ SIK L L+ VR RP MYIGD GLHH+V+EVVDN+IDEA+AGH K++ V ++ Sbjct: 14 YNAESIKHLSDLEHVRLRPAMYIGDIT-ARGLHHLVYEVVDNSIDEAMAGHAKQVSVIVN 72 Query: 65 ADNSVSVQDDGRGIPTGIHPE----EG--VSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 118 D SV+V+DDGRGIP H + EG VS E +MT L GGKFD +SYK SGGLHGV Sbjct: 73 TDGSVTVEDDGRGIPVERHEQLSASEGRDVSTLEGVMTKLKFGGKFDKDSYKTSGGLHGV 132 Query: 119 GVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTN 178 GV+VVN LSQ E+ + R GKI++Q YE G P P+ G T++TGT F P F Sbjct: 133 GVTVVNFLSQWAEVQVCRGGKIYQQSYETGAPTGPVREIGSTDRTGTKTTFKPDGTIF-Q 191 Query: 179 VTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHP 238 T+++Y+IL KRL+EL+FLNSGV I+ +D+R+G+ F YE GI F+E+LN+ IH Sbjct: 192 TTKYQYDILHKRLQELAFLNSGVRIKFKDERNGEGAEFCYERGIIEFIEHLNRASDVIHS 251 Query: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 ++ Y E D +G E+ALQ++ + EN++ + NNI +GGTH++GFR+A+TRTLNAY Sbjct: 252 DVIYLRGEVDTVGFEIALQYSAEYTENLHSYVNNIHTVEGGTHVSGFRSALTRTLNAYGK 311 Query: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 KEG K ++ TGDD REGL AV+SV+V P+F QTK KL + EV V +NE LA Sbjct: 312 KEGLFK--DITPTGDDFREGLTAVISVRVAHPQFEGQTKTKLGNGEVDGIVAGAVNEFLA 369 Query: 359 EYLLENPTDAKIVVGK-IIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPAL 417 ++L ENP AKI+V K ++ A A + + RK AL GLPGKL DC ++ Sbjct: 370 KFLEENPKTAKIIVRKGVLAAEAREAARKAKEVLRSRKNALGGGGLPGKLRDCISKEMER 429 Query: 418 SELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCG 477 ELYLVEGDSAGGSA+ GR R QAILPL+GKI+N K+R DK+L+++EV ++I A+G G Sbjct: 430 CELYLVEGDSAGGSAEGGRLRDFQAILPLRGKIINAYKSREDKVLANEEVQSMIQAIGTG 489 Query: 478 IGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKV 537 IG E + K RY+ IIIMTDADVDGSHIRTLLL FFYRQM +V GHVY+AQPPL++V Sbjct: 490 IGA-EIDLTKRRYNKIIIMTDADVDGSHIRTLLLCFFYRQMYSLVANGHVYVAQPPLFRV 548 Query: 538 KKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRM 597 + K+ Y++ DE M +S + L + G+ ++K+ + + + + Sbjct: 549 RSKKETYYVQTDEEMRSQLLSRGIGDTELDLQ-NGTKFVGDDMKKIAGILASMEDALVAL 607 Query: 598 ERRYPKAMLKEL----------IYQPTLTEAD--LSDEQTVTRWVNALVSELNDKEQHGS 645 ERR L + + D L + + V L SEL K G Sbjct: 608 ERRGISLKLHATRADVNTGALPVVHLFIGSRDYWLRSAEEINAKVQELESELKKKIIFGE 667 Query: 646 QWKFDV--HTNAEQNLFEPIVR---VRTHGVDT---------DYPLDHEFITGGEYRRIC 691 + T+A + E +R V H V T Y +D + Sbjct: 668 KVVEAAPGATDAPPAVDENAIRAYSVELHEVKTINAGLSQLKPYSID-----------LA 716 Query: 692 TLGEKLRGLLEEDAFI-ERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQL 750 L + R +E +I RGE P+ + + + ++G+S+ R+KGLGEMN E+L Sbjct: 717 ALIPQERTGTDEPRYILRRGENEIPLKELRTLVASIREMGQKGMSVTRFKGLGEMNAEEL 776 Query: 751 WETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 +TT+DP++R +++V+++DA AAD +F LMG+ VEPRR FIE +AL+ N+D+ Sbjct: 777 RDTTLDPKNRTLVQVSMRDAGAADDMFRVLMGEKVEPRRQFIETHALEVRNLDV 830 >UniRef50_B8FXX0 DNA gyrase subunit B n=70 Tax=Bacteria RepID=B8FXX0_DESHD Length = 644 Score = 603 bits (1556), Expect = e-171, Method: Compositional matrix adjust. Identities = 310/563 (55%), Positives = 414/563 (73%), Gaps = 5/563 (0%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 +N Y++ I+VL+GL+AVRKRPGMYIG T GLHH+V+E+VDN+IDEALAG+C I V Sbjct: 13 TNDYNAGQIEVLEGLEAVRKRPGMYIGSTS-LRGLHHLVYEIVDNSIDEALAGYCDTIEV 71 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 TIH DNS+SV D+GRGIP IHP+ G A EV +TVLHAGGKF ++YKVSGGLHGVG+S Sbjct: 72 TIHKDNSISVVDNGRGIPVDIHPKLGKPAVEVALTVLHAGGKFSGSAYKVSGGLHGVGMS 131 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE--KTGTMVRFWPSLETFTNV 179 VVNALS L + ++++G I+ Q + G + LAV G+ + +TGT + F P E F + Sbjct: 132 VVNALSTWLHVEVRKDGNIYHQEFMRGKTKTELAVIGQVDPNQTGTTITFSPDPEIFED- 190 Query: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPN 239 T F ++ LA RLRELSFLN VSI L D R+ K++ +++ GGI FV+Y+N++K +HP Sbjct: 191 TVFLFDTLAHRLRELSFLNKKVSITLIDAREDKKEVYYHTGGIYDFVKYINRSKESLHPE 250 Query: 240 IFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDK 299 YF EKDG+ VEV++Q+NDG+ EN++ + NNI +GGTH +GF+AA+TR N Y K Sbjct: 251 PIYFEAEKDGVQVEVSMQYNDGYVENLFSYANNIHTHEGGTHESGFKAALTRVANDYARK 310 Query: 300 EGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAE 359 K + + +G+D REGL AV+SVKVP+P+F QTK KL +SE++S V+ E L+ Sbjct: 311 NNILKANEANLSGEDIREGLTAVISVKVPEPQFEGQTKTKLGNSEIRSIVDSITGEGLSA 370 Query: 360 YLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSE 419 + ENP K V+ K I A+RAREAAR+ARE+TRRK AL+++ LPGKLADC ++ L E Sbjct: 371 FFEENPAIGKKVIEKSIQASRAREAARKARELTRRKSALEVSALPGKLADCSWKEAELCE 430 Query: 420 LYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIG 479 +Y+VEGDSAGGSAKQGR+R+ QAILPL+GKILNVEKAR D++L + E+ +ITA+G GI Sbjct: 431 MYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDRILGNAEIRAMITAMGTGIS 490 Query: 480 RDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKK 539 D ++ +K RYH ++IMTDADVDG+HIR LLLTFF+R M ++E +VYIAQPPL+KVKK Sbjct: 491 ED-FDIEKARYHKLVIMTDADVDGAHIRILLLTFFFRYMKPLLENNYVYIAQPPLFKVKK 549 Query: 540 GKQEQYIKDDEAMDQYQISIALD 562 GK Y+ +E + + Q I D Sbjct: 550 GKDIHYVYSNEELAKLQDEIGRD 572 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 53/98 (54%), Positives = 69/98 (70%) Query: 707 IERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVT 766 +++G+ V S E+ + R + IQRYKGLGEMN EQLWETTMDP R +L+VT Sbjct: 547 VKKGKDIHYVYSNEELAKLQDEIGRDRVEIQRYKGLGEMNAEQLWETTMDPAKRTILQVT 606 Query: 767 VKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 ++DAI AD+LFT LMGD VEPRR FI++NA N+D+ Sbjct: 607 MEDAIKADELFTILMGDVVEPRREFIQDNAQYVRNLDV 644 >UniRef50_UPI00016C54E0 DNA gyrase subunit B n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C54E0 Length = 810 Score = 595 bits (1534), Expect = e-168, Method: Compositional matrix adjust. Identities = 336/815 (41%), Positives = 498/815 (61%), Gaps = 43/815 (5%) Query: 5 YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIH 64 Y +++ LK +R RPGMYIG+TD G+HH+V+EVV N++DEALAG CK I +T+H Sbjct: 11 YTEDNLQTLKDAAHIRHRPGMYIGNTDI-EGMHHLVWEVVYNSVDEALAGFCKNIFITVH 69 Query: 65 ADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN 124 +D S++V DDGRGIP G+ + G S E +T+ + GKF++++YK S GLHG+G +N Sbjct: 70 SDESITVSDDGRGIPVGVKADTGKSTLEEALTIAGSSGKFNNDAYKTSAGLHGMGAKAMN 129 Query: 125 ALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK--TGTMVRFWPSLETFTNVTEF 182 ALS+ I+R+G++++ +E G + L G K TGT + F P E F ++ F Sbjct: 130 ALSEWCTAEIKRDGRVYKMEFEKGYATSKLEDLGPAPKGQTGTTITFKPDPEKFGDIL-F 188 Query: 183 EYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFY 242 +Y+ L R +++SFLN G+ + L D+R GK D FH E GI +VE LN+++ +P + Y Sbjct: 189 DYDRLGTRFQQISFLNKGLKLALADERVGKSDTFHSERGIAEYVEVLNRSEQTNYP-LIY 247 Query: 243 FSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGY 302 + + DG+ VEV Q+ G + CFTNN +DGGTHL+GFR +TR + Y K Sbjct: 248 INKQIDGVTVEVCFQYTQGETKLEMCFTNNAYNKDGGTHLSGFRGGLTRAIGHYGKKANL 307 Query: 303 SKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLL 362 K ++ GDD REGL AV+++ P PKF SQTK KL S EV+ + E+L++YL Sbjct: 308 FK--EIELRGDDFREGLTAVINISHPQPKFESQTKVKLTSPEVEGQTSSVVYEVLSDYLE 365 Query: 363 ENPTDAKIVVGKIIDAARAREAARRAREMTR-RKGALDLAGLPGKLADCQERDPALSELY 421 NP +A+ + K++ A AR AA++AR+ + RK AL+ GLPGKL DC RD +EL+ Sbjct: 366 RNPKEAERICKKVLLTAEARIAAKKARDAVKGRKDALNSGGLPGKLYDCSSRDRENTELF 425 Query: 422 LVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRD 481 LVEGDSAGGSA+ GR+R+ QAILPL+GK+LNVEKA+F+K+L + E++ LI+A+G I Sbjct: 426 LVEGDSAGGSAESGRDREFQAILPLRGKVLNVEKAKFEKLLENNEISALISAVGVDIDNV 485 Query: 482 EYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGK 541 E + K+RY IIIMTDADVDG HIRTLLLTFF+RQM +++E GHV++A+PPLYKV + K Sbjct: 486 E-DVSKVRYGKIIIMTDADVDGQHIRTLLLTFFFRQMRKLIEAGHVFVARPPLYKVTQKK 544 Query: 542 QEQYIKDDEAMDQYQISIALDGATLH-TNASAPA--LAGEALEKLVSEYNATQKMINRME 598 + ++I+ E M + L TL T PA ++G+ L KL+ + + + +E Sbjct: 545 ETRFIQSREEMVTQLTTRGLKNTTLRATQVDRPARDISGDELTKLLPLLDEAESAVVGLE 604 Query: 599 RRYPKAMLKELIYQ------PT--LTEADLSDEQ------TVTRWVNALVSELNDKEQHG 644 RR L EL+ + PT L E + + E V + AL EL + G Sbjct: 605 RR--GRNLDELLTRAVDGLFPTYNLYEREKNKEHWFRTTDEVAAFKQALADELKREPVVG 662 Query: 645 SQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEED 704 + D + ++L + +++ G D + + I G E +R L+ D Sbjct: 663 EDYTLDEWHDL-KSLNRAVTKLKAFGFDAADLVPLQRIAGRE--------PPVRYTLDHD 713 Query: 705 AFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLR 764 + + S + + + + +G+++ R+KGLGEM+PE+LW TT+DP+ R +L+ Sbjct: 714 G------SNKSLVSLRELVIEIRRLGEKGIAVTRFKGLGEMDPEELWATTLDPQYRTLLK 767 Query: 765 VTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKA 799 VT+ DA A+++F TLMG V+ R+AFI N+LK+ Sbjct: 768 VTLNDAFKAEEMFRTLMGKEVQDRKAFIFSNSLKS 802 >UniRef50_Q6GKU0 DNA gyrase subunit B n=143 Tax=cellular organisms RepID=GYRB_STAAR Length = 644 Score = 575 bits (1482), Expect = e-162, Method: Compositional matrix adjust. Identities = 309/556 (55%), Positives = 400/556 (71%), Gaps = 5/556 (0%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 +++Y + I+VL+GL+AVRKRPGMYIG T + GLHH+V+E+VDN+IDEALAG+ +I V Sbjct: 11 TDNYGAGQIQVLEGLEAVRKRPGMYIGSTSE-RGLHHLVWEIVDNSIDEALAGYANQIEV 69 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 I DN + V D+GRGIP I + G A EVI+TVLHAGGKF YKVSGGLHGVG S Sbjct: 70 VIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLHGVGSS 129 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTE 181 VVNALSQ LE+ + R I+ Q Y+ GVPQ L G T+KTGT++RF E FT T Sbjct: 130 VVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVGTTDKTGTVIRFKADGEIFTETTV 189 Query: 182 FEYEILAKRLRELSFLNSGVSIRLRDKRDG---KEDHFHYEGGIKAFVEYLNKNKTPIHP 238 + YE L +R+REL+FLN G+ I LRD+RD +ED +HYEGGIK++VE LN+NK PIH Sbjct: 190 YNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYEGGIKSYVELLNENKEPIHD 249 Query: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Y KD I VE+A+Q+N G+ N+ + NNI +GGTH GF+ A+TR LN+Y Sbjct: 250 EPIYIHQSKDDIEVEIAIQYNSGYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGL 309 Query: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 K+ K +G+D REG+ A++S+K DP+F QTK KL +SEV+ V++ +E Sbjct: 310 SSKIMKEDKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFE 369 Query: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 +L ENP A+ VV K I AARAR AA++ARE+TRRK ALD+A LPGKLADC + P Sbjct: 370 RFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEEC 429 Query: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 E++LVEGDSAGGS K GR+ + QAILPL+GKILNVEKAR D++L++ E+ +ITA G GI Sbjct: 430 EIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGI 489 Query: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 G D ++ K RYH I+IMTDADVDG+HIRTLLLTFFYR M ++E G+VYIAQPPLYK+ Sbjct: 490 GGD-FDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLT 548 Query: 539 KGKQEQYIKDDEAMDQ 554 +GKQ+ Y+ +D +D+ Sbjct: 549 QGKQKYYVYNDRELDK 564 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 46/70 (65%), Positives = 55/70 (78%), Gaps = 1/70 (1%) Query: 735 SIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEE 794 SI RYKGLGEMN +QLWETTM+PE R +L+V ++DAI ADQ F LMGD VE RR FIE+ Sbjct: 576 SIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDVVENRRQFIED 635 Query: 795 NALKAANIDI 804 NA+ AN+D Sbjct: 636 NAV-YANLDF 644 >UniRef50_P21558 DNA gyrase subunit B n=61 Tax=cellular organisms RepID=GYRB_HALSQ Length = 639 Score = 571 bits (1471), Expect = e-161, Method: Compositional matrix adjust. Identities = 303/541 (56%), Positives = 387/541 (71%), Gaps = 8/541 (1%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 N Y + I+VL+GL+AVRKRP MYIG TD GLHH+V+EVVDN+IDEALAGHC I V Sbjct: 5 NEYGAGQIQVLEGLEAVRKRPAMYIGSTD-SRGLHHLVYEVVDNSIDEALAGHCDAIEVA 63 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 +H D SVSV D+GRGIP G H + A EVIMTVLHAGGKFD+ SY+VSGGLHGVGV+V Sbjct: 64 LHEDGSVSVTDNGRGIPVGTHEQYDRPALEVIMTVLHAGGKFDNKSYQVSGGLHGVGVTV 123 Query: 123 VNALSQKLELVIQREGKIHRQIYEHGVPQAP----LAVTGETEKTGTMVRFWPSLETFTN 178 VNALS +LE+ ++ +G + +E G PQ + E TGT +RFWP F Sbjct: 124 VNALSSELEVEVKHDGAVWTHRFEVGEPQVEEFERVRDLEPGEDTGTTIRFWPDDGIF-E 182 Query: 179 VTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHP 238 TEF+++ L RLREL+FLNSGV I L D+R + F +EGGI+ FVEYLN+ KT +H Sbjct: 183 TTEFDFKTLENRLRELAFLNSGVEISLSDERTDESSTFLFEGGIREFVEYLNETKTALHD 242 Query: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 ++ Y+ E +GI VE+A+Q D Q +I+ F NNI R+GGTHL GF+ A+TR +N Y + Sbjct: 243 DVIYYDDESEGIEVEIAMQATDELQGSIHAFANNINTREGGTHLTGFKTALTRVVNDYAN 302 Query: 299 KEGYSKKAKV-SATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELL 357 + G+D REGL AV+SVK PDP+F QTK KL +SEV+ VE ++ L Sbjct: 303 SHDMLDDLDGDNLRGEDVREGLTAVISVKHPDPQFEGQTKTKLGNSEVRGIVESVTHQQL 362 Query: 358 AEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPAL 417 + ENP A ++ K ++AARAR+AA++A E+TRRK AL+ LPGKLADCQ RDP+ Sbjct: 363 GTFFEENPDTATAIISKAVEAARARKAAKQAEELTRRKSALESTSLPGKLADCQSRDPSE 422 Query: 418 SELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCG 477 SEL++VEGDSAGGSAKQGR+RK QAILPLKGKILNVEK R D++L + E+ LITA+G G Sbjct: 423 SELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKHRLDRILENDEIRALITAIGGG 482 Query: 478 IGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKV 537 +G DE++ +K RY +I+MTDADVDG+HIRTLLLT YR M ++E G+VY AQPPLY+V Sbjct: 483 VG-DEFDIEKARYQRLILMTDADVDGAHIRTLLLTLLYRHMRPLIEAGYVYAAQPPLYRV 541 Query: 538 K 538 + Sbjct: 542 R 542 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 46/87 (52%), Positives = 65/87 (74%), Gaps = 2/87 (2%) Query: 720 EQALDWLVKESRRG--LSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLF 777 E D +++E G +QR+KGLGEMNP+QLW+TTM+PE+R + R+TV+DA AAD++F Sbjct: 553 EAERDRIIEEECNGNPTQVQRFKGLGEMNPDQLWDTTMNPENRVLKRITVEDAAAADRMF 612 Query: 778 TTLMGDAVEPRRAFIEENALKAANIDI 804 LMGDAV PR+ FI+++A A +DI Sbjct: 613 NILMGDAVGPRKQFIKDHANDAEWVDI 639 >UniRef50_Q44272 DNA gyrase subunit B (Fragment) n=2942 Tax=cellular organisms RepID=GYRB_ACIG9 Length = 390 Score = 570 bits (1469), Expect = e-161, Method: Compositional matrix adjust. Identities = 293/392 (74%), Positives = 332/392 (84%), Gaps = 4/392 (1%) Query: 106 DNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGT 165 DNSYKVSGGLHGVGVSVVNALS+KLEL I R GKIH Q Y HG Q PL V G+T +TGT Sbjct: 1 DNSYKVSGGLHGVGVSVVNALSEKLELTIHRAGKIHEQEYRHGDSQYPLKVVGDTNRTGT 60 Query: 166 MVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAF 225 VRFWPS ETF+ T F +ILA+RLRELSFLN+GV I LRD+R E F YEGG+ F Sbjct: 61 RVRFWPSAETFSQ-TIFNVDILARRLRELSFLNAGVRIVLRDERINAEHVFDYEGGLSEF 119 Query: 226 VEYLNKNKTPIHPNIFYFSTEK--DGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLA 283 V+Y+N+ KT ++ +IF+F+ + +GI VEVALQWND +QEN+ CFTNNIPQ+DGGTHLA Sbjct: 120 VKYINEGKTHLN-DIFHFTAAQADNGITVEVALQWNDSYQENVRCFTNNIPQKDGGTHLA 178 Query: 284 GFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSS 343 GFRAA+TR LN YMD E KK KV+ +GDDAREGL A+VSVKVPDPKFSSQTK+KLVSS Sbjct: 179 GFRAALTRGLNNYMDSENILKKEKVAVSGDDAREGLTAIVSVKVPDPKFSSQTKEKLVSS 238 Query: 344 EVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGL 403 EVK+AVEQ MN+ +EYLLENP AK + GKIIDAARAR+AAR+AREMTRRK ALD+AGL Sbjct: 239 EVKTAVEQAMNKAFSEYLLENPQAAKAIAGKIIDAARARDAARKAREMTRRKSALDIAGL 298 Query: 404 PGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLS 463 PGKLADCQE+DPALSELYLVEGDSAGGSAKQGRNRK QAILPLKGKILNVE+ARFD+M+S Sbjct: 299 PGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDRMIS 358 Query: 464 SQEVATLITALGCGIGRDEYNPDKLRYHSIII 495 S EV TLITALGCGIGR+EYNPDKLRYH III Sbjct: 359 SAEVGTLITALGCGIGREEYNPDKLRYHKIII 390 >UniRef50_Q2FUD6 DNA gyrase subunit B n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FUD6_METHJ Length = 675 Score = 567 bits (1462), Expect = e-160, Method: Compositional matrix adjust. Identities = 303/670 (45%), Positives = 427/670 (63%), Gaps = 57/670 (8%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 +SN+Y+S +IK+L+GL+ VR+RP MYIG TD GLHH+V+EVVDN+IDEALAG+C I Sbjct: 6 LSNTYNSENIKILRGLEPVRERPAMYIGSTD-SRGLHHLVYEVVDNSIDEALAGYCTHIQ 64 Query: 61 VTIHADNSVSVQDDGRGIPTG-IHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 119 V IH D SVSV+D+GRGIP + + +A E ++TVLHAGGKFD N+Y+VSGGLHGVG Sbjct: 65 VVIHQDGSVSVEDNGRGIPIDPMKDNDNKTALETVLTVLHAGGKFDKNTYQVSGGLHGVG 124 Query: 120 VSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGE-------------------- 159 VSVVNALS +L + ++G +R + G PQ L E Sbjct: 125 VSVVNALSVELTATVWKDGYEYRMFFSRGQPQTDLEKKEEDFEEIKDRYIKRYGSLPDNC 184 Query: 160 ------------TEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRD 207 ++ +GTM+RF P + F + EF+Y+ILA RLREL+FLNSG++I + D Sbjct: 185 PETKEEFLNRYLSKISGTMIRFKPDSKIFETI-EFDYDILAHRLRELAFLNSGITISIAD 243 Query: 208 KR--DGKE--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFS--TEKDGIGVEVALQWNDG 261 +R D +E + F YEGGI +V YLN PIH ++ FS E+ + V++A Q+ Sbjct: 244 ERCEDLEECSEVFSYEGGISEYVRYLNHEAQPIHESVISFSRKDEEARVEVDIAFQYAAA 303 Query: 262 FQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIA 321 + E +Y + N++ ++GGTHL GFR+A+T+ +N + K +S GDD REGL A Sbjct: 304 YSEKVYTYVNSVNTKEGGTHLEGFRSALTKAINKMGKENKAIKDQNLSLKGDDVREGLTA 363 Query: 322 VVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARA 381 ++SV++ +P+F QTK KL +SEVK V+ + L EY E+P + +V K + A +A Sbjct: 364 IISVRMANPQFEGQTKMKLGNSEVKGIVDSLVYASLCEYFEEHPKELAAIVDKAVLAYQA 423 Query: 382 REAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQ 441 REAAR+A+E+ RRK L+ +GLPGKLADC ER SE+Y+VEGDSAGGSAKQGR+R+ Q Sbjct: 424 REAARKAKELARRKSTLESSGLPGKLADCSERSAEKSEIYIVEGDSAGGSAKQGRDRRFQ 483 Query: 442 AILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADV 501 AILPL+GKILNVEKA K+L + E+ LI+A+G G+G + ++ +K RYH IIIMTDADV Sbjct: 484 AILPLRGKILNVEKATVHKILKNNEIQALISAIGTGVG-ESFDIEKARYHHIIIMTDADV 542 Query: 502 DGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIAL 561 DG+HI TLL+TFF+R + ++E G++Y+AQPPLY++ KGKQE+Y +E M + + Sbjct: 543 DGAHISTLLMTFFFRYLQPLIEAGYIYLAQPPLYRIAKGKQEKYAYTEEEMKEILQEMGE 602 Query: 562 DGATLHTNASAPALAGEALEKLVSEYNATQKMINRME---RRYPKAMLKELIYQPTLTEA 618 G + K + E NA+Q M+ R + ++++ Y + E Sbjct: 603 KGVNVQRY------------KGLGEMNASQLWATTMDPETRVLKRVVIEDAAYANEIFEK 650 Query: 619 DLSDEQTVTR 628 + D+ T R Sbjct: 651 LMGDDVTARR 660 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 44/98 (44%), Positives = 67/98 (68%) Query: 707 IERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVT 766 I +G++ + + E+ + L + +G+++QRYKGLGEMN QLW TTMDPE+R + RV Sbjct: 578 IAKGKQEKYAYTEEEMKEILQEMGEKGVNVQRYKGLGEMNASQLWATTMDPETRVLKRVV 637 Query: 767 VKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 ++DA A+++F LMGD V RR FI+ +A + N+DI Sbjct: 638 IEDAAYANEIFEKLMGDDVTARRDFIKRHAKEVTNLDI 675 >UniRef50_B3TAI0 Putative DNA gyrase B n=1 Tax=uncultured marine microorganism HF4000_APKG8D23 RepID=B3TAI0_9ZZZZ Length = 646 Score = 557 bits (1435), Expect = e-157, Method: Compositional matrix adjust. Identities = 281/542 (51%), Positives = 386/542 (71%), Gaps = 14/542 (2%) Query: 25 MYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHP 84 M++GD DG+ LHH ++EVVDNA+DE LAG+ + V + + SV+V D GRGIP G P Sbjct: 1 MFLGDPHDGSALHHCIWEVVDNAVDEHLAGYNSTVEVNLEKNGSVTVIDHGRGIPVGKIP 60 Query: 85 EEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQI 144 EEGVSAAEVIMT LHAGGKFD+ +YKV+GGLHGVGVS VNA+S+KL + I R+GK+ Q Sbjct: 61 EEGVSAAEVIMTKLHAGGKFDNKAYKVAGGLHGVGVSAVNAVSEKLSMTIHRDGKVWTQN 120 Query: 145 YEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIR 204 + G +A L TG+T TGT + F P ++ F++VT+F++E + RLR +FLN+G+ I Sbjct: 121 FVRGKRKAVLKATGKTTSTGTTINFKPDMKIFSDVTDFDFEQINTRLRRTAFLNAGLQIW 180 Query: 205 LRDKR--DGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDG----IGVEVALQW 258 LRD R D E Y+GG++ +VE +N+ K IH + + KDG + VEVALQW Sbjct: 181 LRDFRGQDTVEIEHKYDGGLRQYVESMNEKKKAIHDEVIHILGSKDGDKGEVLVEVALQW 240 Query: 259 NDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREG 318 D + E+I+CFTN I DGG HL+G ++++TRT+N+Y K S +GDD REG Sbjct: 241 TDAYSESIHCFTNIIHNTDGGAHLSGLKSSLTRTVNSYAQSRKLLKNVS-SLSGDDVREG 299 Query: 319 LIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDA 378 L AV+S+K PDP F++QTK KLV+SEV VEQ +N+ L +Y ENP A+ +V K++ A Sbjct: 300 LSAVISIKHPDPSFNAQTKAKLVTSEVAGIVEQIVNDKLGDYFEENPAVARSIVEKVVLA 359 Query: 379 ARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNR 438 ++AREAAR+AR++TRRKG L+ GLPG+LADCQ RDPA ELY+VEG+SAGGSAK R+R Sbjct: 360 SKAREAARKARDLTRRKGVLEGGGLPGQLADCQSRDPAECELYIVEGESAGGSAKTARDR 419 Query: 439 KNQAILPLKGKILNVEKAR--FDKMLSSQEVATLITALGCGIGRDE-----YNPDKLRYH 491 + QA+LPL+GKILNVE+ + K+ S++++ +I ALG G+G +E ++P+KLRY Sbjct: 420 RTQAVLPLRGKILNVERQQRNLTKVFSNEQIQRMIRALGAGVGNEEEDEGAFDPEKLRYG 479 Query: 492 SIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEA 551 IIIMTDAD+DG+HIRTL+LTF +R M + G+VYIA PPL+ V +GK +++ ++ Sbjct: 480 KIIIMTDADIDGAHIRTLILTFMWRFMRRAIANGNVYIAAPPLFSVSRGKHTEWVHTEKD 539 Query: 552 MD 553 D Sbjct: 540 RD 541 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 46/123 (37%), Positives = 66/123 (53%), Gaps = 35/123 (28%) Query: 702 EEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRR 761 + DA ++R ++ P A +++QRYKGLGEMNPEQLW+TTMDPESR Sbjct: 539 DRDAVVKRLQKEAPTAK---------------INVQRYKGLGEMNPEQLWQTTMDPESRT 583 Query: 762 MLRVTVKDAIA--------------------ADQLFTTLMGDAVEPRRAFIEENALKAAN 801 M +V + + + ++LF+ LMG+ V RRAFIE+NA K Sbjct: 584 MFQVKMPEKPSEVRFTDVGEQMSDEEAVEGEVNELFSILMGEDVPDRRAFIEKNASKVTA 643 Query: 802 IDI 804 +D+ Sbjct: 644 LDV 646 >UniRef50_C7QFM2 DNA gyrase subunit B n=8 Tax=Bacteria RepID=C7QFM2_CATAD Length = 661 Score = 556 bits (1432), Expect = e-156, Method: Compositional matrix adjust. Identities = 302/631 (47%), Positives = 411/631 (65%), Gaps = 28/631 (4%) Query: 5 YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIH 64 Y++ SI VL+GL+AVRKRPGMYIG T + GLHH+V+E+VDN++DEA+AG+ I V + Sbjct: 18 YNADSISVLEGLEAVRKRPGMYIGSTGE-RGLHHLVYEIVDNSVDEAMAGYADTIEVWLL 76 Query: 65 ADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN 124 AD V V D+GRGIP GI+ + G SA EV+MT+LHAGGKF D YKVSGGLHGVGVSVVN Sbjct: 77 ADGGVKVVDNGRGIPVGINTKTGKSALEVVMTILHAGGKFGDGGYKVSGGLHGVGVSVVN 136 Query: 125 ALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEY 184 ALS ++E+ + +G + Q+Y+HGVP+ + G TGT FW ++ F T + + Sbjct: 137 ALSSRVEVEVHTDGFVWNQVYKHGVPETEVQKGGPAADTGTSTIFWADVDIF-ETTVYSF 195 Query: 185 EILAKRLRELSFLNSGVSIRLRDKRDGKEDH--------FHYEGGIKAFVEYLNKNK-TP 235 E L++R +E++FLN G++I L D+R D +H EGGI FV ++N K P Sbjct: 196 ETLSRRFQEMAFLNKGLTISLTDERPEFRDENGEQRSVKYHAEGGIADFVRHINSRKGEP 255 Query: 236 IHPNIFYFSTE-KD-GIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTL 293 +HPN+ F E KD + E+ALQWN + E+IY F NNI GGTH GFRAA+T + Sbjct: 256 VHPNVIDFEGEDKDRTLAAEIALQWNSQYSESIYTFANNINTHGGGTHEEGFRAALTTLI 315 Query: 294 NAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQM 353 N Y + K+ + G+D REGL +VSVK+ +P+F QTKDKL + E K+ V++ + Sbjct: 316 NKYARDQKLLKEKDDNLAGEDIREGLTTIVSVKLAEPQFEGQTKDKLGNPEAKTFVQRLV 375 Query: 354 NELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQER 413 E L E+L ENP +A+ V+ K I A+ AR AAR+ARE+TRRKG L+ + LPGKL+DCQ Sbjct: 376 YEKLGEWLEENPNEAREVIRKTIQASTARMAARKARELTRRKGLLESSSLPGKLSDCQSN 435 Query: 414 DPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITA 473 DP +E+++VEGDSAGGSA+ GR+ QAILP++GKILNVEKAR DK+L + EV LI+A Sbjct: 436 DPTKTEIFIVEGDSAGGSARSGRDPMTQAILPIRGKILNVEKARIDKVLQNTEVQALISA 495 Query: 474 LGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPP 533 LG G+ D+++ +LRYH II+M DADVDG+HI TLLLT +R M +VE GHVY+A PP Sbjct: 496 LGTGV-HDDFDISRLRYHKIILMADADVDGAHINTLLLTLLFRFMKPLVEAGHVYLAAPP 554 Query: 534 LYKVKKGKQE-QYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQK 592 LYKVK + Y D DQ + + + + G + E NA + Sbjct: 555 LYKVKWTNNDFNYAYSDRERDQL-LEAGVGAGKRRKDETVQRFKG------LGEMNAEEL 607 Query: 593 MINRMERRYPKAMLKELIYQPTLTEADLSDE 623 I M+R + ++ Q TL +A +D+ Sbjct: 608 RITTMDREH------RILRQVTLDDAAQADD 632 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 39/74 (52%), Positives = 51/74 (68%) Query: 731 RRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRA 790 R+ ++QR+KGLGEMN E+L TTMD E R + +VT+ DA AD LF+ LMG+ VE RR Sbjct: 588 RKDETVQRFKGLGEMNAEELRITTMDREHRILRQVTLDDAAQADDLFSVLMGEDVEARRN 647 Query: 791 FIEENALKAANIDI 804 FI+ NA +DI Sbjct: 648 FIQRNAKDVRFLDI 661 >UniRef50_A5TY73 DNA gyrase subunit B n=542 Tax=Bacteria RepID=GYRB_MYCTA Length = 675 Score = 553 bits (1426), Expect = e-156, Method: Compositional matrix adjust. Identities = 289/568 (50%), Positives = 380/568 (66%), Gaps = 37/568 (6%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 + Y ++SI +L+GL+AVRKRPGMYIG T + GLHH+++EVVDNA+DEA+AG+ + V Sbjct: 10 DEYGAASITILEGLEAVRKRPGMYIGSTGE-RGLHHLIWEVVDNAVDEAMAGYATTVNVV 68 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 + D V V DDGRGIP H G+ +V+MT LHAGGKFD ++Y +SGGLHGVGVSV Sbjct: 69 LLEDGGVEVADDGRGIPVATHAS-GIPTVDVVMTQLHAGGKFDSDAYAISGGLHGVGVSV 127 Query: 123 VNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEF 182 VNALS +LE+ I+R+G Q+YE P L T+KTG+ VRFW F TE+ Sbjct: 128 VNALSTRLEVEIKRDGYEWSQVYEKSEPLG-LKQGAPTKKTGSTVRFWADPAVF-ETTEY 185 Query: 183 EYEILAKRLRELSFLNSGVSIRLRDKR--------------------------------D 210 ++E +A+RL+E++FLN G++I L D+R Sbjct: 186 DFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASERAAESTAPHK 245 Query: 211 GKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFT 270 K FHY GG+ FV+++N+ K IH +I FS + G VE+A+QWN G+ E+++ F Sbjct: 246 VKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVEIAMQWNAGYSESVHTFA 305 Query: 271 NNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDP 330 N I +GGTH GFR+A+T +N Y K + TGDD REGL AV+SVKV +P Sbjct: 306 NTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREGLAAVISVKVSEP 365 Query: 331 KFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRARE 390 +F QTK KL ++EVKS V++ NE L + NPTDAK+VV K + +A+AR AAR+ARE Sbjct: 366 QFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSSAQARIAARKARE 425 Query: 391 MTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKI 450 + RRK A D+ GLPGKLADC+ DP SELY+VEGDSAGGSAK GR+ QAILPL+GKI Sbjct: 426 LVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGKI 485 Query: 451 LNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLL 510 +NVEKAR D++L + EV +ITALG GI DE++ KLRYH I++M DADVDG HI TLL Sbjct: 486 INVEKARIDRVLKNTEVQAIITALGTGI-HDEFDIGKLRYHKIVLMADADVDGQHISTLL 544 Query: 511 LTFFYRQMPEIVERGHVYIAQPPLYKVK 538 LT +R M ++E GHV++AQPPLYK+K Sbjct: 545 LTLLFRFMRPLIENGHVFLAQPPLYKLK 572 Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 39/69 (56%), Positives = 52/69 (75%) Query: 736 IQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEEN 795 IQRYKGLGEM+ ++LWETTMDP R + +VT+ DA AAD+LF+ LMG+ V+ RR+FI N Sbjct: 607 IQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELFSILMGEDVDARRSFITRN 666 Query: 796 ALKAANIDI 804 A +D+ Sbjct: 667 AKDVRFLDV 675 >UniRef50_Q9A0L0 DNA gyrase subunit B n=56 Tax=cellular organisms RepID=GYRB_STRP1 Length = 650 Score = 547 bits (1409), Expect = e-154, Method: Compositional matrix adjust. Identities = 298/546 (54%), Positives = 387/546 (70%), Gaps = 5/546 (0%) Query: 5 YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIH 64 YD+S I+VL+GL+AVR RPGMYIG T GLHH+V+E+VDN+IDEALAG I V I Sbjct: 15 YDASQIQVLEGLEAVRMRPGMYIGSTAK-EGLHHLVWEIVDNSIDEALAGFASHIKVFIE 73 Query: 65 ADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN 124 ADNS++V DDGRGIP I + G A E + TVLHAGGKF YKVSGGLHGVG SVVN Sbjct: 74 ADNSITVVDDGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSSVVN 133 Query: 125 ALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEY 184 ALS +L++ + + G+IH Q ++ G A L V G T+ TGT V F P E FT T+F+Y Sbjct: 134 ALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVIGTTDVTGTTVHFTPDPEIFTETTQFDY 193 Query: 185 EILAKRLRELSFLNSGVSIRLRDKRDG--KEDHFHYEGGIKAFVEYLNKNKTPIHPNIFY 242 +LAKR++EL+FLN G+ I + DKR G +E+HF YEGGI ++VE+LN K I Y Sbjct: 194 SVLAKRIQELAFLNRGLKISITDKRSGMEQEEHFLYEGGIGSYVEFLNDKKDVIFETPIY 253 Query: 243 FSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGY 302 E +GI VEVA+Q+ +QE + F NNI +GGTH GFRAA+TR +N Y K Sbjct: 254 TDGELEGIAVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFRAALTRVINDYAKKNKI 313 Query: 303 SKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLL 362 K+ + + TG+D REGL AV+SVK P+P+F QTK KL +SEV + +E +LL Sbjct: 314 LKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFQRFLL 373 Query: 363 ENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYL 422 ENP A+ +V K I A++AR AA+RARE+TR+K L+++ LPGKLADC D +EL++ Sbjct: 374 ENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDANQNELFI 433 Query: 423 VEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDE 482 VEGDSAGGSAK GRNR+ QAILP++GKILNVEKA DK+L+++E+ +L TA+G G G D Sbjct: 434 VEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGFGAD- 492 Query: 483 YNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQ 542 ++ K RY ++IMTDADVDG+HIRTLLLT YR M ++E G+VYIAQPP+Y VK G + Sbjct: 493 FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSE 552 Query: 543 -EQYIK 547 ++YI+ Sbjct: 553 IKEYIQ 558 Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 45/63 (71%), Positives = 52/63 (82%) Query: 735 SIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEE 794 ++QRYKGLGEM+ QLWETTMDPE+R M RVTV DA AD++F LMGD VEPRR FIEE Sbjct: 582 TVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEADKVFDMLMGDRVEPRRDFIEE 641 Query: 795 NAL 797 NA+ Sbjct: 642 NAV 644 >UniRef50_P34031 DNA gyrase subunit B n=54 Tax=Bacteria RepID=GYRB_SPICI Length = 640 Score = 543 bits (1398), Expect = e-152, Method: Compositional matrix adjust. Identities = 272/556 (48%), Positives = 381/556 (68%), Gaps = 10/556 (1%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 M ++Y+S SI++L+GL+A+RKRPGMYIG T+ GLHH+V+E+VDN+IDE LA +I Sbjct: 1 MGDNYNSESIQILEGLEAIRKRPGMYIGATN-ARGLHHLVWEIVDNSIDEVLANFANKIK 59 Query: 61 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 + ++ D S++V D+GRGIP IHP+ VS E + T+LHAGGKFD N+YK+SGGLHGVG Sbjct: 60 IILNKDESITVIDNGRGIPIEIHPKTKVSTLETVFTILHAGGKFDSNTYKISGGLHGVGA 119 Query: 121 SVVNALSQKLELVIQREGKIH-RQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNV 179 SVVNALS+ L++ +++ K + + + G P+ G T +TGT V F P + F Sbjct: 120 SVVNALSKYLKVEVRKNNKKYVMEFHNGGQILTPIKEVGSTSETGTTVTFLPDEKIFKET 179 Query: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDH---FHYEGGIKAFVEYLNKN-KTP 235 T F + + R+++L FLN G+ I L D R+ E+ + + GIK +V LNK TP Sbjct: 180 TIFSFSTIQNRIKQLVFLNKGLEISLVDLREEDEEKTVLYQFNNGIKDYVLELNKTIGTP 239 Query: 236 IHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNA 295 ++ ++FY +D I VE LQ+ND + ENI+ F NNI +GGTH G R A+ R +N Sbjct: 240 LN-DVFYVEGIEDNIVVEFGLQYNDNYSENIFSFCNNINTHEGGTHEEGARLAIVREINN 298 Query: 296 YMDKE--GYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQM 353 Y + +K + T DD +EG+ ++S++ P+P++ QT KL++SEVK V + Sbjct: 299 YFKNQINKNNKGNEDKFTWDDIKEGMTIIISIRHPEPQYEGQTNQKLLNSEVKKIVSNIV 358 Query: 354 NELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQER 413 + L+ YLLENP DAK ++ KI + +A A+RA+E+TRRK +D LPGKL+DC+ + Sbjct: 359 GKGLSSYLLENPEDAKKIIEKISLSLKATIVAQRAKEITRRKIVMDSFSLPGKLSDCETK 418 Query: 414 DPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITA 473 D ++ELY+VEGDSAGGSAK GRNRK QAILPL+GKILNVEKA+ K+ + E+ ++ITA Sbjct: 419 DAKIAELYIVEGDSAGGSAKSGRNRKFQAILPLRGKILNVEKAKQIKIFENNEINSIITA 478 Query: 474 LGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPP 533 LG GI +D +N KLRY +IIMTDADVDG+HIR LLLTFFYR M +++E G++YIAQPP Sbjct: 479 LGAGI-KDNFNDKKLRYQKVIIMTDADVDGAHIRILLLTFFYRYMKDLIENGNIYIAQPP 537 Query: 534 LYKVKKGKQEQYIKDD 549 LYKV+ Q +Y+ D Sbjct: 538 LYKVENSNQIRYVYSD 553 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 43/73 (58%), Positives = 55/73 (75%) Query: 732 RGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAF 791 + +IQRYKGLGEMNPEQLWETTMDPE R +L+V+V +A A+ + LMG+ VEPR+ F Sbjct: 568 KNYTIQRYKGLGEMNPEQLWETTMDPERRLLLKVSVNNAFEANLICNELMGENVEPRKKF 627 Query: 792 IEENALKAANIDI 804 I ENA N+D+ Sbjct: 628 IRENAKYVKNLDV 640 >UniRef50_D0J983 DNA gyrase subunit B n=22 Tax=cellular organisms RepID=D0J983_BLASP Length = 642 Score = 539 bits (1389), Expect = e-151, Method: Compositional matrix adjust. Identities = 279/560 (49%), Positives = 388/560 (69%), Gaps = 12/560 (2%) Query: 1 MSNS---YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCK 57 MSN Y + SI+ L+G++ +R RP MYIGD GLHH+V EV+DN++DE+LAG+C Sbjct: 1 MSNKNTDYTADSIQSLEGIEHIRLRPSMYIGDVGI-RGLHHLVCEVIDNSVDESLAGYCN 59 Query: 58 EIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHG 117 +I VTIH + ++V D+GRGIP IH +EG SA EV+MT + AGGKFD NSYKVSGGLHG Sbjct: 60 KIWVTIHKNGFITVLDNGRGIPIDIHKKEGKSALEVVMTKIGAGGKFDKNSYKVSGGLHG 119 Query: 118 VGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFT 177 VG+S VNALS++L + + R GKI++Q Y G P + GET GT + + F Sbjct: 120 VGISCVNALSKRLIVTVYRNGKIYQQEYLRGTPIDRVQCLGETHLQGTKIHYLADNSIFN 179 Query: 178 NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIH 237 ++T + YEIL+ RL+EL+FLN G+ + L+D+R+ E+ F + G+K ++ L+KN+ + Sbjct: 180 SIT-YHYEILSTRLKELAFLNKGLHLFLKDERNNIEEDFFSKNGLKEYLSILDKNQESLI 238 Query: 238 PNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYM 297 NI + EK+ VEVA+Q+N F+E IY + NNI +GGTH++GFR A+TRT Y Sbjct: 239 RNIIFIEGEKEDTIVEVAMQYNTSFKEKIYSYVNNINTSEGGTHISGFRRALTRTFKKYT 298 Query: 298 D---KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMN 354 D +KK KV TGDD REGL A++S++V +P+F QTK KL + EV V++ + Sbjct: 299 DGLLSNKDNKKDKVDLTGDDFREGLTAIISIRVMEPQFEGQTKTKLSNHEVGGIVDKIVG 358 Query: 355 ELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERD 414 E+L YL ENP++ + ++ K+I +A+AR+AA++ARE+ ++K + + LPGKLADC + Sbjct: 359 EMLNSYLEENPSERRKIIDKVILSAKARQAAKKARELIQKKSPIYNSILPGKLADCSFNN 418 Query: 415 PALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAL 474 P E+YLVEGDSAGG+AKQGR+R QAILPL+GKILNVEKA K+ ++E+ + T+L Sbjct: 419 PENCEIYLVEGDSAGGTAKQGRDRSFQAILPLRGKILNVEKAMQYKIFENEEIRNIFTSL 478 Query: 475 GCGIGRDE----YNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIA 530 G IG +E N KLRY+ IIIMTDAD+DGSHI TL+LT F+R M ++E+GH+YIA Sbjct: 479 GVSIGTEEDPKNLNVKKLRYNKIIIMTDADIDGSHISTLILTLFFRYMKPLIEKGHIYIA 538 Query: 531 QPPLYKVKKGKQEQYIKDDE 550 PPLY ++KG QY DE Sbjct: 539 TPPLYLIRKGNHSQYAWSDE 558 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 48/100 (48%), Positives = 68/100 (68%), Gaps = 2/100 (2%) Query: 706 FIERGERRQPVASFEQALDWLVKESRRG-LSIQRYKGLGEMNPEQLWETTMDPESRRMLR 764 I +G Q S E+ L + RR ++IQRYKGLGEMN EQLWETTM+P+ R + + Sbjct: 544 LIRKGNHSQYAWSDEEREKILQRLGRRKKINIQRYKGLGEMNAEQLWETTMNPKKRTLRK 603 Query: 765 VTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 V +++ AD++F+ LMG+ V PRR+FIE+NA+ A ID+ Sbjct: 604 VHIENLSEADKIFSILMGEEVPPRRSFIEKNAIHAK-IDV 642 >UniRef50_C7M118 DNA gyrase subunit B n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M118_ACIFD Length = 647 Score = 537 bits (1384), Expect = e-151, Method: Compositional matrix adjust. Identities = 286/551 (51%), Positives = 380/551 (68%), Gaps = 8/551 (1%) Query: 4 SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTI 63 SY ++ I VL+GL+ VR RPGMYIG T +GLHH+V+EVVDNA+DE +AG C EI VTI Sbjct: 15 SYTAADIVVLEGLEHVRLRPGMYIGSTGP-SGLHHLVWEVVDNAVDEVMAGACTEIDVTI 73 Query: 64 HADNSVSVQDDGRGIPTGIHPEE-GVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 AD V+D+GRGIP HP + SAAEV++T L+AGGKF YKVSGGLHGVGVSV Sbjct: 74 LADGGCRVEDNGRGIPVDPHPSDPSKSAAEVVLTQLNAGGKFGTGGYKVSGGLHGVGVSV 133 Query: 123 VNALSQKLELVIQREGKIHR-QIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180 VNALS +L L + R+G +R + + G P PL G + + GT+V FWP F + T Sbjct: 134 VNALSARLVLEVHRDGSTYRMEFVKGGTPTGPLERIGSSGGRRGTVVTFWPDPTIFED-T 192 Query: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDH--FHYEGGIKAFVEYLNKNKTPIHP 238 EF + + +RL+ ++FLN GV +R RD+R G+E F Y GGI FV +LN+ K P+ Sbjct: 193 EFSAQRILERLQVIAFLNKGVVVRFRDERPGREHEQTFSYAGGIVDFVRHLNEPKGPLFA 252 Query: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 + Y++ ++ + VEVA WN F E ++ F N I +GG H GFR A+T+ +N Y Sbjct: 253 KVGYYAASEEDMEVEVAFSWNTTFYETLFTFANGISTEEGGMHAEGFRKALTQVINRYAR 312 Query: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 K+ + G+D REG+ +VSV++ +P+F QTK KL + V+S VE+ NE LA Sbjct: 313 ARNLLKERDENLEGNDIREGMTTIVSVRLVNPQFEGQTKTKLGNVSVRSFVERVTNEHLA 372 Query: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 +L ENP +A+ +V K I A RAR AAR+ARE+TRRK L+ AGLPGKL DC RDP+ S Sbjct: 373 TWLEENPREAQAIVQKAIVAQRARLAARQARELTRRKSGLESAGLPGKLTDCTSRDPSES 432 Query: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 EL++VEG+SAGG+ +GR+ K QA+LP++GKILNVE+AR DKMLS+QE+ +LI A+G G+ Sbjct: 433 ELFIVEGNSAGGTTIKGRDPKTQAVLPIRGKILNVERARLDKMLSNQEIQSLIAAIGAGV 492 Query: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 G DE++ K RYH +II+ DAD DGSHIRTLLLTFF+RQM +VE G VY AQPPLY Sbjct: 493 G-DEFDIKKARYHKVIILADADPDGSHIRTLLLTFFFRQMRPLVEAGMVYAAQPPLYSTL 551 Query: 539 KGKQEQYIKDD 549 G ++ YIK++ Sbjct: 552 LGTEKVYIKNE 562 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 33/67 (49%), Positives = 47/67 (70%) Query: 738 RYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENAL 797 R KGLGEM+ ++L +TT+ + R +L+VT++ A AD++ + LMGD VE RR FI+ENA Sbjct: 581 RLKGLGEMDFDELRDTTLHQDRRTLLKVTIEQAAIADEVCSVLMGDDVEQRRRFIQENAG 640 Query: 798 KAANIDI 804 A ID Sbjct: 641 DARFIDF 647 >UniRef50_B6GDL9 DNA gyrase subunit B n=2 Tax=Collinsella RepID=B6GDL9_9ACTN Length = 674 Score = 535 bits (1377), Expect = e-150, Method: Compositional matrix adjust. Identities = 284/562 (50%), Positives = 384/562 (68%), Gaps = 22/562 (3%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 N Y + IKVL+GL+AVR RPGMYIG T TGLHH+V+E+VDN++DEA+AG C +I VT Sbjct: 5 NEYGGNEIKVLEGLEAVRVRPGMYIGSTSS-TGLHHLVWEIVDNSVDEAMAGFCTKIEVT 63 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 +H DNS++V D+GRGIP HP + + EV+MT+LHAGGKFD+++YKVSGGLHGVGVSV Sbjct: 64 VHPDNSITVVDNGRGIPVDEHPVKKIPTLEVVMTILHAGGKFDNSAYKVSGGLHGVGVSV 123 Query: 123 VNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEF 182 VNALS+K+ + ++R+G I+ + G + G +E TGT FWP E F T + Sbjct: 124 VNALSKKMNVQVRRDGHIYEMEFSRGKTTQKMREIGTSETTGTTTTFWPDEEIF-ETTVY 182 Query: 183 EYEILAKRLRELSFLNSGVSIRLRDKR--DGKEDHFHYEGGIKAFVEYLNKNKTPI---- 236 +Y+IL RL++ +FLN + I L+D+R D + F Y GGI FV++LN+ KT Sbjct: 183 DYDILRTRLQQTAFLNKNLKIVLKDERTADPLVEEFCYAGGIVDFVKFLNEGKTVPEGLK 242 Query: 237 HPNIFYFSTEKD------GIG-VEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 HP Y S E + IG VEVA+QWN + EN+ F N+I +GG H+ GFRAA+ Sbjct: 243 HP--IYLSGESEPGAPVEKIGEVEVAIQWNTSYSENVVSFANDIRTIEGGMHMEGFRAAL 300 Query: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 T +N Y K K+ + + TGDD REGL AVVSVK+ DP+F QTK KL SS +++ Sbjct: 301 TSVINDYARKNNILKEKEGNLTGDDIREGLTAVVSVKLADPQFEGQTKAKLGSSFMRTLT 360 Query: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 + ++E LA++L E+P A+ ++ K A++AR AAR+ARE TRRK L+ A LPGKLAD Sbjct: 361 RKVVSEGLADFLEEHPKQAREIIKKAQQASKARNAARKAREATRRKSLLETASLPGKLAD 420 Query: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 C RD L+EL++VEGDSAGGSAK GR R QAILPL+GKILNVE+ + SS+ + + Sbjct: 421 CSVRDAELTELFIVEGDSAGGSAKDGRRRDIQAILPLRGKILNVERVGDHRAFSSETIQS 480 Query: 470 LITALGCGIGR-----DEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVER 524 LITA+GCG+ +++ K RYH IIIMTDADVDG+HIR LLLTFFY+ M +++ Sbjct: 481 LITAIGCGVTTGNGDGGDFDITKARYHKIIIMTDADVDGAHIRILLLTFFYKYMRPLIDA 540 Query: 525 GHVYIAQPPLYKVKKGKQEQYI 546 G+VY+A PP++ +K + Y+ Sbjct: 541 GYVYVACPPIFGIKVRNKIHYV 562 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 39/77 (50%), Positives = 56/77 (72%) Query: 727 VKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVE 786 V + R+G ++QRYKGLGEM+P+QL TTMDP++R + RVT++DA+ AD+ LMG V Sbjct: 597 VTKKRKGYTVQRYKGLGEMDPKQLASTTMDPKTRILQRVTIEDAVVADRAVRELMGSEVG 656 Query: 787 PRRAFIEENALKAANID 803 RR +IE++A A +D Sbjct: 657 YRREYIEKHAHDARFLD 673 >UniRef50_Q2NJM1 DNA gyrase subunit B n=5 Tax=Mollicutes RepID=Q2NJM1_AYWBP Length = 671 Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust. Identities = 272/587 (46%), Positives = 384/587 (65%), Gaps = 40/587 (6%) Query: 4 SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTI 63 +Y++ SI++L+GL+AVRKRPGMYIG T GLHH+V+E+VDN+IDEALAGH I + I Sbjct: 3 NYNADSIQILEGLEAVRKRPGMYIGSTAQ-KGLHHLVWEIVDNSIDEALAGHANNITLEI 61 Query: 64 HADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVV 123 +SV D+GRGIP IHP+ G A E I+T LHAGGKFD +SYKVSGGLHGVG SVV Sbjct: 62 LPGEIISVSDNGRGIPVDIHPKTGKPAVETILTTLHAGGKFDSSSYKVSGGLHGVGASVV 121 Query: 124 NALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFE 183 NALS + I+ +I+ Q YE G+ +PL V G T K GT ++F E F T + Sbjct: 122 NALSNWFTVEIRLNKQIYFQKYEKGIAVSPLEVIGGTNKRGTTIQFLSDPEIFQETTIYN 181 Query: 184 YEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHY--EGGIKAFVEYLNKN--KTPIHPN 239 ++ L +R+++LSFLN G+ +++ DKR KE F++ E G++ +++++N + + P H Sbjct: 182 FDTLKERMQQLSFLNKGLKLKIADKRYEKETVFNFCHEKGLQDYIDFINTSHKQIPFH-E 240 Query: 240 IFYFSTEKDGIGVEVALQWNDGFQ--------------------------ENIYCFTNNI 273 IFY E + E+ ++ + + I+ F NNI Sbjct: 241 IFYLEKEAQKLAFEIVFEYTTQLRPTKKDEQGNEIEEKEDKDTIPRYTQSQKIFSFVNNI 300 Query: 274 PQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFS 333 P +GGTH GF+ A+TR ++ Y + KK + +D EG+ A++S+K DP+F Sbjct: 301 PTHEGGTHEEGFKLALTRVISKYAKEFNLLKKDE-HLLSEDILEGITAIISLKHQDPQFE 359 Query: 334 SQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTR 393 QTK KL ++EV+ Q E L +YLLE+P D++ ++ K + +A AR AA+RARE+ R Sbjct: 360 GQTKAKLANTEVRQITSQLFGEFLEKYLLEHPQDSRKIIDKCLLSANARLAAKRAREVVR 419 Query: 394 RKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 453 K LD G KLADC+ +DP +SELY+VEGDSAGGSAKQGR+ + QAILPL+GK+LNV Sbjct: 420 NK-PLDSLGFASKLADCRSKDPHISELYIVEGDSAGGSAKQGRDSRFQAILPLRGKVLNV 478 Query: 454 EKARFDKMLSSQEVATLITALGCGI----GRDEYNPDKLRYHSIIIMTDADVDGSHIRTL 509 EK+ K+L+++E+ +LI A+G GI G+D +N DK+RYH IIIMTDADVDG+HIRTL Sbjct: 479 EKSLDAKILTNKEIKSLIQAIGAGINIGKGKD-FNVDKIRYHKIIIMTDADVDGAHIRTL 537 Query: 510 LLTFFYRQMPEIVERGHVYIAQPPLYKVKKGK-QEQYIKDDEAMDQY 555 LLTFF+R E++E+G++Y A+PPLYK +KGK +Y D++ + Sbjct: 538 LLTFFFRHFRELIEKGYIYFARPPLYKYQKGKGTPKYFYDEKTKQTF 584 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 42/74 (56%), Positives = 51/74 (68%), Gaps = 10/74 (13%) Query: 736 IQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAA----------DQLFTTLMGDAV 785 QRYKGLGEMNP QLWETTMDPE+R +L+ ++KDA+ A DQ F LMG+ V Sbjct: 594 FQRYKGLGEMNPNQLWETTMDPENRTLLKASLKDALNALSDEEALMETDQTFNMLMGEKV 653 Query: 786 EPRRAFIEENALKA 799 PR+ FI E AL+A Sbjct: 654 LPRKNFILEKALEA 667 >UniRef50_Q94BZ7 DNA gyrase subunit B, mitochondrial n=83 Tax=cellular organisms RepID=GYRBM_ARATH Length = 732 Score = 521 bits (1342), Expect = e-146, Method: Compositional matrix adjust. Identities = 275/559 (49%), Positives = 378/559 (67%), Gaps = 13/559 (2%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 S Y S I+VL+GLD VRKRPGMYIG T GLHH+V+E++DNAIDEA AG+ ++ V Sbjct: 88 SKGYSSEQIQVLEGLDPVRKRPGMYIGSTGS-RGLHHLVYEILDNAIDEAQAGYASKVDV 146 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNS--YKVSGGLHGVG 119 +HAD SVSV D+GRGIPT +HP S+ E ++TVLHAGGKF S Y VSGGLHGVG Sbjct: 147 VLHADGSVSVVDNGRGIPTDLHPATKKSSLETVLTVLHAGGKFGGTSSGYSVSGGLHGVG 206 Query: 120 VSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLA---VTGETEKT-GTMVRFWPSLET 175 +SVVNALS+ LE+ + R+G H+Q Y G P L + E++ T GT +RFWP E Sbjct: 207 LSVVNALSEALEVSVWRDGMEHKQNYSRGKPITTLTCRVLPLESKGTKGTSIRFWPDKEV 266 Query: 176 FTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE----DHFHYEGGIKAFVEYLNK 231 FT EF++ +A R+REL+FLN V+I L+ + D E + + GG+ +V +LN Sbjct: 267 FTTAIEFDHNTIAGRIRELAFLNPKVTISLKKEDDDPEKTQYSEYSFAGGLTEYVSWLNT 326 Query: 232 NKTPIHPNIFYFSTEKDGIGVEVALQW-NDGFQENIYCFTNNIPQRDGGTHLAGFRAAMT 290 +K PIH ++ F E +G V+VALQW +D + + + + N+I DGGTH+ G +A++T Sbjct: 327 DKNPIH-DVLGFRREINGATVDVALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLT 385 Query: 291 RTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVE 350 RTLN K K+ +S +G+ REGL +VSVKVP+P+F QTK +L + EV+ V+ Sbjct: 386 RTLNTLAKKSKTVKEKDISLSGEHVREGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVD 445 Query: 351 QQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADC 410 Q + E L E+L +P + ++ K ++A +A AA+RARE+ R K L + LPGKLADC Sbjct: 446 QSVQEYLTEFLELHPDILESIISKSLNAYKAALAAKRARELVRSKSVLKSSSLPGKLADC 505 Query: 411 QERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATL 470 DP +SE+++VEGDSAGGSAKQGR+R+ QAILPL+GKILN+E+ M ++E+ L Sbjct: 506 SSTDPEVSEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNL 565 Query: 471 ITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIA 530 I LG G+ +++ + LRYH III+TDADVDG+HIRTLLLTFF+R + + G +Y+ Sbjct: 566 ILGLGLGVKGEDFKKENLRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVG 625 Query: 531 QPPLYKVKKGKQEQYIKDD 549 PPL+KV++GK QY DD Sbjct: 626 VPPLFKVERGKNAQYCYDD 644 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 32/64 (50%), Positives = 46/64 (71%) Query: 735 SIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEE 794 +IQR+KGLGEM PEQLWETTM+PE+R + ++ V D A+ F++LMG V+ R+ I+ Sbjct: 661 NIQRFKGLGEMMPEQLWETTMNPETRILKQLVVDDIAEANMTFSSLMGARVDVRKELIKN 720 Query: 795 NALK 798 A + Sbjct: 721 AATR 724 >UniRef50_P50074 DNA gyrase subunit B, novobiocin-resistant n=117 Tax=cellular organisms RepID=GYRBR_STRSH Length = 677 Score = 517 bits (1332), Expect = e-145, Method: Compositional matrix adjust. Identities = 279/558 (50%), Positives = 375/558 (67%), Gaps = 22/558 (3%) Query: 4 SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTI 63 SYD+++I VL GLDAVRKRPGMYIG T + GLHH+V E+VDN++DEALAG I VT+ Sbjct: 25 SYDANAITVLDGLDAVRKRPGMYIGSTGE-RGLHHLVQELVDNSVDEALAGVADRIDVTV 83 Query: 64 HADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVV 123 AD V V D+GRGIP G+HP E A EV++TVLHAGGKF Y VSGGLHGVG+SVV Sbjct: 84 LADGGVRVVDNGRGIPVGMHPVEKRPAVEVVLTVLHAGGKFGGGGYGVSGGLHGVGLSVV 143 Query: 124 NALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFE 183 NALS +L I +G Q Y G P APLA T +TGT + FW + F TE+ Sbjct: 144 NALSTRLSAEIWTDGHRWTQDYRDGAPTAPLARHEATSRTGTSLTFWADGDIF-ETTEYS 202 Query: 184 YEILAKRLRELSFLNSGVSIRLRDKRD----------------GKEDHFHYEGGIKAFVE 227 +E LA+R +E++FLN G+++ L D+R K + Y+GGI FV Sbjct: 203 FETLARRHQEMAFLNGGLTLTLTDERSSARATAAVDEADSDPTAKTVSYRYDGGITDFVV 262 Query: 228 YLNKNK-TPIHPNIFYFSTEKDG--IGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAG 284 +LN K P HP++ + E + E+ALQWN + +++Y + N I +GGTH G Sbjct: 263 HLNARKGEPAHPSVITIAAEDTERLLSAEIALQWNGQYTDSVYSYANAIHTHEGGTHEEG 322 Query: 285 FRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSE 344 FR A+T +N Y ++ + + +G+D REGL A++SV V +P+F QTK KL ++E Sbjct: 323 FRTALTTVVNRYAREKRLLRDKDANLSGEDIREGLTAIISVNVGEPQFEGQTKTKLGNTE 382 Query: 345 VKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLP 404 V++ +++ ++E LA++ NP +A +V K + AA AR AAR+AR++TRRKG L+ A LP Sbjct: 383 VRTLLQKIVHEHLADWFDRNPNEAVDIVRKAVQAATARVAARKARDLTRRKGLLETAALP 442 Query: 405 GKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 464 GKL+DCQ DPA SE+++VEGDSAGGSAK GRN + QAILP++GKILNVEKAR DK+L + Sbjct: 443 GKLSDCQSNDPATSEIFIVEGDSAGGSAKAGRNPQYQAILPIRGKILNVEKARIDKVLQN 502 Query: 465 QEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVER 524 QE LI+A G G+ D ++ KLRYH II+M DADVDG HI TLLLTF +R M +VE Sbjct: 503 QENQALISAFGTGVHED-FDIAKLRYHKIILMADADVDGQHISTLLLTFLFRFMRPLVEE 561 Query: 525 GHVYIAQPPLYKVKKGKQ 542 GHV++++PPLYK+K ++ Sbjct: 562 GHVHLSRPPLYKIKWSRE 579 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 40/70 (57%), Positives = 50/70 (71%) Query: 735 SIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEE 794 SIQR+KGLGEMN E+L TTMDP+ R + +VT+ DA AD LF+ LMG+ VE RR FI+ Sbjct: 608 SIQRFKGLGEMNAEELRVTTMDPDHRVLGQVTLDDAAFADDLFSVLMGEDVEARRHFIQR 667 Query: 795 NALKAANIDI 804 NA +DI Sbjct: 668 NAQDVRFLDI 677 >UniRef50_P66938 DNA topoisomerase 4 subunit B n=158 Tax=Bacteria RepID=PARE_STAAM Length = 663 Score = 510 bits (1314), Expect = e-143, Method: Compositional matrix adjust. Identities = 282/565 (49%), Positives = 382/565 (67%), Gaps = 15/565 (2%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 N+Y SI+VL+GL+AVRKRPGMYIG TD GLHH+V+E+VDN++DE L G+ EI VT Sbjct: 5 NNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGYGNEIDVT 63 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 I+ D S+S++D+GRG+PTGIH + G EVI TVLHAGGKF YK SGGLHGVG SV Sbjct: 64 INKDGSISIEDNGRGMPTGIH-KSGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASV 122 Query: 123 VNALSQKLELVIQREGKIHRQIYEHG-VPQAPLAVTGETEKTGTMVRFWPSLETFTNVTE 181 VNALS+ LE+ I R+G I+ Q +++G P + L G+T+KTGT V F P F T Sbjct: 123 VNALSEWLEVEIHRDGSIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKASTS 182 Query: 182 FEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHPN 239 F +++L++RL+E +FL + I L D R GKE +H+HYE GIK FV Y+N+ K +H + Sbjct: 183 FNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEGKEVLH-D 241 Query: 240 IFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDK 299 + FS E +GI V+VA Q+ND + E+I F NN+ +DGGTH GF+ AMTR N Y + Sbjct: 242 VATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDYARR 301 Query: 300 EGYSKKAKVSATGDDAREGLIAVVSVKVPDP--KFSSQTKDKLVSSEVKSAVEQQMNELL 357 K + G+D REGL AVVSV++P+ +F QTK KL +SE +SAV+ + + L Sbjct: 302 INELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVDSVVADKL 361 Query: 358 AEYLLENPTDAKIVVGKIIDAARAREAARRAREMTR--RKGALDLAGLPGKLADCQERDP 415 YL E +K +V K I A +AREAAR+ARE R +K L GKL Q ++ Sbjct: 362 PFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNT 421 Query: 416 ALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALG 475 +ELYLVEGDSAGGSAK GR+RK QAILPL+GK++N EKAR + + ++E+ T+I +G Sbjct: 422 EKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIG 481 Query: 476 CGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLY 535 G+G D + + Y+ +IIMTDAD DG+HI+ LLLTFF++ M +V+ G V+IA PPLY Sbjct: 482 AGVGTD-FKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLY 540 Query: 536 KVKKGKQE----QYIKDDEAMDQYQ 556 K++KGK + +Y DE +++ Q Sbjct: 541 KLEKGKGKTKRVEYAWTDEELNKLQ 565 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 47/93 (50%), Positives = 69/93 (74%), Gaps = 3/93 (3%) Query: 707 IERGE---RRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRML 763 +E+G+ +R A ++ L+ L KE +G ++QRYKGLGEMNPEQLWETTM+PE+R ++ Sbjct: 542 LEKGKGKTKRVEYAWTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLI 601 Query: 764 RVTVKDAIAADQLFTTLMGDAVEPRRAFIEENA 796 RV V+D + + + TTLMGD V+PRR +IE++ Sbjct: 602 RVQVEDEVRSSKRVTTLMGDKVQPRREWIEKHV 634 >UniRef50_P43053 DNA gyrase subunit B n=78 Tax=Bacteria RepID=GYRB_MYCHP Length = 648 Score = 504 bits (1297), Expect = e-141, Method: Compositional matrix adjust. Identities = 257/562 (45%), Positives = 370/562 (65%), Gaps = 16/562 (2%) Query: 5 YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIH 64 Y++ +I++L+GL+AVRKRPGMYIG GLHH+++E+VDN++DEA+AG EI + ++ Sbjct: 10 YNADNIQILEGLEAVRKRPGMYIGSIG-FKGLHHLLWEIVDNSVDEAMAGFATEIKIKLY 68 Query: 65 ADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN 124 +N + V+D+GRG+PTGIH SA E I+TVLHAGGKFD ++YKVSGGLHGVG SVVN Sbjct: 69 PNNVIEVEDNGRGMPTGIHSGTKKSAVETILTVLHAGGKFDGSNYKVSGGLHGVGASVVN 128 Query: 125 ALSQKLELVIQREGKIHRQIYEHG-VPQAPLAVTGETEK--TGTMVRFWPSLETFTNVTE 181 ALS + E+ ++R+GK+H Q + +G +P PL V G + TGT ++F P T Sbjct: 129 ALSSEFEVWVKRDGKLHYQQFRNGGIPVKPLEVIGNVSEVETGTTIKFHPDY-TIMEKEN 187 Query: 182 FEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIF 241 F+++ + +++++LN G+ I + + F +EGG+ +V+ LNK K I P + Sbjct: 188 FDFDTIIDHSKQIAYLNKGLKITVENVEKNIIKVFCFEGGLIDYVKELNKGKKLIVPEVI 247 Query: 242 Y---------FSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRT 292 Y F+ +D I VEVA+Q+N+ + +I + NNI DGGTH GF A+ R Sbjct: 248 YAEGVFNDKNFTNGQDVI-VEVAMQYNEAYTNSIVSYANNIQTIDGGTHEQGFYDALVRI 306 Query: 293 LNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQ 352 N Y + K + T +D +EGL+A++S+K DP F QTK KL + + + A + Sbjct: 307 YNNYAETNKLFKTSSEKITREDVKEGLVAIISIKHTDPIFEGQTKGKLENKDARIATNKI 366 Query: 353 MNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQE 412 +++ L YL ENP A+ ++ K + + R +ARE +R+ LDL LPGKLADC Sbjct: 367 LSDSLERYLNENPEIARAIIEKCLLSQHTRLLEIKAREASRKGNGLDLGNLPGKLADCSS 426 Query: 413 RDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 472 ++ + EL++VEG+SAGGSAK GR+R QAILPL+GK++N EK F +LS++E+AT+I Sbjct: 427 KNAEIRELFIVEGNSAGGSAKMGRDRSIQAILPLRGKVINAEKNSFASVLSNKEIATMIH 486 Query: 473 ALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQP 532 ALG GI E++ +KL+YH IIIMTDADVDG+HI TLLLTFFYR M ++E G VY+AQP Sbjct: 487 ALGTGI-NTEFDINKLKYHKIIIMTDADVDGAHITTLLLTFFYRYMKPLIEYGFVYLAQP 545 Query: 533 PLYKVKKGKQEQYIKDDEAMDQ 554 PLYK+ GK +Y +D +Q Sbjct: 546 PLYKITSGKNVEYAYNDLQKEQ 567 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 49/76 (64%), Positives = 61/76 (80%) Query: 729 ESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPR 788 E +R ++IQRYKGLGEM+PEQLWETTMDPE+R+ML+V + DA D +F TLMG+ +EPR Sbjct: 573 EDKRNVAIQRYKGLGEMDPEQLWETTMDPETRKMLQVQIDDAAICDTVFATLMGEEIEPR 632 Query: 789 RAFIEENALKAANIDI 804 FI+ENA A NIDI Sbjct: 633 HDFIQENAKYANNIDI 648 >UniRef50_UPI0001A7B046 ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Arabidopsis thaliana RepID=UPI0001A7B046 Length = 693 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 273/604 (45%), Positives = 384/604 (63%), Gaps = 48/604 (7%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 S Y S I+VL+GLD VRKRPGMYIG T GLHH+V+E++DNAIDEA AG +I V Sbjct: 14 SKDYSSEHIQVLEGLDPVRKRPGMYIGSTG-SRGLHHLVYEILDNAIDEAQAGFASKIDV 72 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHA--GGKFDDNSYKVSGGLHGVG 119 +H+D+SVS+ D+GRGIPT +HP G S+ E ++TVLHA + Y VSGGLHGVG Sbjct: 73 VLHSDDSVSISDNGRGIPTDLHPATGKSSLETVLTVLHAGGKFGGKSSGYSVSGGLHGVG 132 Query: 120 VSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPL---AVTGETEKT-GTMVRFWPSLE- 174 +SVVNALS+ LE++++R+G +Q Y G P L + E+ T GT +RFWP E Sbjct: 133 LSVVNALSEALEVIVRRDGMEFQQKYSRGKPVTTLTCHVLPPESRGTQGTCIRFWPDKEG 192 Query: 175 --TFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE----DHFHYEGGIKAFVEY 228 FT +F++ +A R+REL+FLN V+I L+ + D E + Y GG+ +V + Sbjct: 193 FALFTTAIQFDHNTIAGRIRELAFLNPKVTISLKKEDDDPERDVYSEYFYAGGLTEYVSW 252 Query: 229 LNKNKTPIHPNIFYFSTEKDGIGVEVALQW-NDGFQENIYCFTNNIPQRDGGTHLAGFRA 287 LN +K P+H ++ F E +G V+V+LQW +D + + + + N+I DGGTH+ G +A Sbjct: 253 LNTDKKPLH-DVLGFRKEINGSTVDVSLQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKA 311 Query: 288 AMTRTLNAYMDK------EGY--------------------------SKKAKVSATGDDA 315 ++TRTLN+ K +GY + + +S +G+ Sbjct: 312 SLTRTLNSLAKKLKVIKVKGYIIYSSPWIETKFKYSSALKRHALRTINNEKDISLSGEHV 371 Query: 316 REGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKI 375 REGL +VSVKVP+P+F QTK +L + EV+ V+Q + E L EYL +P + ++ K Sbjct: 372 REGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEYLELHPDVLESIISKS 431 Query: 376 IDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQG 435 ++A +A AA+RARE+ R K L + LPGKLADC DPA SE+++VEGDSAGGSAKQG Sbjct: 432 LNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPAESEIFIVEGDSAGGSAKQG 491 Query: 436 RNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 495 R+R+ QAILPL+GKILN+E+ M ++E+ LI LG G+ +++N + LRYH III Sbjct: 492 RDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFNKENLRYHKIII 551 Query: 496 MTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQY 555 +TDADVDG+HIRTLLLTFF+R + + G +Y+ PPL+KV++GKQ Y DD A+ + Sbjct: 552 LTDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVERGKQAHYCYDDAALKKI 611 Query: 556 QISI 559 S Sbjct: 612 TASF 615 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 33/72 (45%), Positives = 50/72 (69%), Gaps = 2/72 (2%) Query: 735 SIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEE 794 +IQR+KGLGEM P QLWETTM+P++R + ++ V DA + +F++LMG V+ R+ I+ Sbjct: 622 NIQRFKGLGEMMPAQLWETTMNPDTRILKQLVVDDAAETNMVFSSLMGARVDVRKELIKS 681 Query: 795 NA--LKAANIDI 804 A + N+DI Sbjct: 682 AATRMNLENLDI 693 >UniRef50_A9KS52 DNA topoisomerase (ATP-hydrolyzing) n=33 Tax=Bacteria RepID=A9KS52_CLOPH Length = 642 Score = 492 bits (1266), Expect = e-137, Method: Compositional matrix adjust. Identities = 258/568 (45%), Positives = 364/568 (64%), Gaps = 22/568 (3%) Query: 5 YDSSSIKVLKGLDAVRKRPGMYIGDTDDGT-GLHHMVFEVVDNAIDEALAGHCKEIIVTI 63 Y+ S I VL+GL+AVRKRPGMYIG T GT GLHH+++E++DN IDE LAG C ++ +T+ Sbjct: 4 YNGSQIVVLEGLEAVRKRPGMYIGST--GTRGLHHLIWEILDNGIDEHLAGFCNQLEITL 61 Query: 64 HADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVV 123 D +S+ D GRG+P IHP + + A V+ T+LHAGGKF + YKVSGGLHGVG SVV Sbjct: 62 LKDGGISIADHGRGVPVDIHPTKKIPTARVVYTILHAGGKFGGSVYKVSGGLHGVGASVV 121 Query: 124 NALSQKLELVIQREGKIHRQIYEHG------VPQAPLAVTGETEK--TGTMVRFWPSLET 175 NALS ++ + I+R+GKI+R YEHG + L V G+ K TGT V F+P Sbjct: 122 NALSTRMIVEIRRDGKIYRDEYEHGGHPCVELENGMLPVVGKCNKSDTGTKVTFYPDPTI 181 Query: 176 FTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTP 235 F V EF+ E + K+L+E++FLN +SI D+ G + + E GIK+FV Y+N+ + Sbjct: 182 FETV-EFKAETITKKLKEVAFLNKNLSIVFYDQNTGFKKTYCEEFGIKSFVSYINREASV 240 Query: 236 IHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNA 295 IH Y + I VEVALQ+ + F E I + N I DGGT + GF+ A+TR +N Sbjct: 241 IHEEPIYIEGKSGDIEVEVALQYTNSFSEQINAYCNRINVVDGGTLVTGFKTALTRVMNQ 300 Query: 296 YMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNE 355 Y + G K+ + G D R GL+ ++S+K PDP+F QTK KL +++ KSAVE + Sbjct: 301 YARELGVLKEKDENFDGKDIRNGLVTIISIKHPDPQFEGQTKTKLGNTDAKSAVEDVFSG 360 Query: 356 LLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDP 415 + + +N K ++ + + AR+A+ +AR ++ L+ KLA C + P Sbjct: 361 EVTRFFDKNVEILKAILENSMRSYTARKASDKARSAVLKQ--LNDIDTKSKLASCSSKKP 418 Query: 416 ALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALG 475 E+Y+VEGDSAGG+ K RNR+ QA+LPL+GKI+NVEKA +K+L + E+ ++I + G Sbjct: 419 EECEVYIVEGDSAGGTVKTARNRRTQAVLPLRGKIINVEKATLEKILVNNEIKSMIASFG 478 Query: 476 CGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLY 535 CGIG D ++ KLRY III+TDADVDG+HI TLLLTFFYR MPE++ G +Y PPLY Sbjct: 479 CGIGED-FDISKLRYDKIIILTDADVDGAHISTLLLTFFYRFMPELIMEGKIYRGLPPLY 537 Query: 536 KV-------KKGKQEQYIKDDEAMDQYQ 556 +V KK K+ +YI +D +D+++ Sbjct: 538 RVEYETSEGKKKKKFEYIYNDFELDKFR 565 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 42/83 (50%), Positives = 59/83 (71%), Gaps = 2/83 (2%) Query: 723 LDWLVKESR-RGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLM 781 LD K ++ + + IQRYKGLGEM+ EQLWETT++PE+R + +V++ D + AD+ T LM Sbjct: 561 LDKFRKNTKHKIIHIQRYKGLGEMDAEQLWETTLNPETRVLAQVSITDTVDADETTTLLM 620 Query: 782 GDAVEPRRAFIEENALKAANIDI 804 + V PRRAFI + A K A +DI Sbjct: 621 SNNVPPRRAFIMDEA-KYAKLDI 642 >UniRef50_B7G298 Predicted protein n=3 Tax=cellular organisms RepID=B7G298_PHATR Length = 727 Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust. Identities = 273/583 (46%), Positives = 372/583 (63%), Gaps = 41/583 (7%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 + SY + I VLKGLD VRKRPGMYIG T GLHH+V+EVVDN +DEALAGH + Sbjct: 63 AQSYGAGQITVLKGLDPVRKRPGMYIGSTGP-DGLHHLVWEVVDNCVDEALAGHATFVTT 121 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDD----NSYKVSGGLHG 117 TIHAD S++V DDGRGIPT +H E G SA E ++T LHAGGKFD+ + YKVSGGLHG Sbjct: 122 TIHADGSLTVTDDGRGIPTDLHSETGKSALETVLTELHAGGKFDNQGSNSGYKVSGGLHG 181 Query: 118 VGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE------KTGTMVRFWP 171 VG+SVVNALS+ + + + R ++++ +E GVP PL + + K+GT V F P Sbjct: 182 VGISVVNALSEFVHVKVDRTPELYQMRFERGVPTGPLQNLDKLKTLLSKRKSGTSVTFLP 241 Query: 172 SLETFT------NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRD----GKEDHFHYEGG 221 L+ F ++T F+ L R+ E+++LN+G+ + L+D+R G+ F++ GG Sbjct: 242 DLKVFKGDNGKPDIT-FDSSRLKGRMDEIAYLNAGLVLTLKDERKSPGRGRLQVFYHAGG 300 Query: 222 IKAFVEYLNKNKTPIHPNIFYFST----------EKDGIGVEVALQWN-DGFQENIYCFT 270 + + E L + KTP+ F +T +KD + AL+W+ D + E+I F Sbjct: 301 LAEYAELLCRTKTPL----FQGTTSSRKKKPARKQKDSASDDDALRWSSDMYAESILSFC 356 Query: 271 NNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDP 330 NNI RDGG+H+ G +A +TRT+N + +K+ + G+ REGL A+VSV V +P Sbjct: 357 NNIRTRDGGSHVEGLKACLTRTVNQAAKRSNKAKEGAANLPGEFIREGLTAIVSVSVSEP 416 Query: 331 KFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRARE 390 +F QTK +L + EV+ AV+ ++ L + P + K A A AA+ AR+ Sbjct: 417 EFEGQTKGRLGNPEVRPAVDSLLSAELTKLFDFRPEILDAIYNKASSAQAAAAAAKAARD 476 Query: 391 MTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKI 450 M RRK L LPGKLADC RDP SE+++VEGDSA GSAKQGR+R+ QAILPL+GKI Sbjct: 477 MVRRKTLLTSTILPGKLADCASRDPEESEIFIVEGDSAAGSAKQGRDRRTQAILPLRGKI 536 Query: 451 LNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLL 510 LN+E+A +++ + E+ LI+ALG G+ E++P LRY I+IMTDADVDG+HIR LL Sbjct: 537 LNIERAATERIYQNTELQGLISALGLGVKGSEFDPKSLRYGRIVIMTDADVDGAHIRVLL 596 Query: 511 LTFFYRQMPEIVERGHVYIAQPPLYKVKKG----KQEQYIKDD 549 LTFFYR E+VE GHVYIAQPPLYKV G ++E Y +D Sbjct: 597 LTFFYRYQRELVENGHVYIAQPPLYKVSVGSGRSRKEGYAFND 639 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 43/73 (58%), Positives = 53/73 (72%), Gaps = 2/73 (2%) Query: 734 LSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIE 793 +S+QR+KGLGEM PEQLW TTMDPE R ML+VTV DA ADQ + LMGD V PR+ FI Sbjct: 655 VSLQRFKGLGEMMPEQLWSTTMDPERRTMLQVTVNDASMADQTLSILMGDTVAPRKEFIS 714 Query: 794 ENA--LKAANIDI 804 A L+ ++D+ Sbjct: 715 TQAETLRVDDLDL 727 >UniRef50_P50028 DNA gyrase subunit B n=331 Tax=cellular organisms RepID=GYRB_MYCCT Length = 643 Score = 489 bits (1258), Expect = e-136, Method: Compositional matrix adjust. Identities = 260/558 (46%), Positives = 374/558 (67%), Gaps = 12/558 (2%) Query: 5 YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIH 64 YD S+I+VL+GL+AVRKRPGMYIG TD+ GLHH+V+E+VDNAIDEALAG+C +I V + Sbjct: 7 YDESAIQVLEGLEAVRKRPGMYIGSTDN-KGLHHLVWEIVDNAIDEALAGYCTQIDVILE 65 Query: 65 ADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN 124 DNS++V D+GRGIPTG+H + G EVI +VLHAGGKFD +YK SGGLHGVG SV N Sbjct: 66 KDNSITVIDNGRGIPTGMH-KTGKPTPEVIFSVLHAGGKFDSTAYKSSGGLHGVGSSVTN 124 Query: 125 ALSQKLELVIQREGKIHRQIYEHGVP-QAPLAVTGETEKTGTMVRFWPSLETFTNVTEFE 183 ALS++ + +I R+ KIH +++G + PL T KTGT + F P F+N +F Sbjct: 125 ALSKRFKAIIYRDKKIHEIEFKNGGKLEKPLTFINTTYKTGTTINFLPDDTIFSN-AKFN 183 Query: 184 YEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYF 243 + ++++RL+E + LNSG+ I L D + + ++ G+ FV+ L +KTP+ +I Sbjct: 184 FSLISERLKESALLNSGLKITLSDLISNRYVEYQFQDGLVEFVKELVDDKTPV-TDIITI 242 Query: 244 STEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYS 303 + E I VE+ALQ+ + E I F NN+ DGGTHL GF++ + R +N Y K+ Sbjct: 243 NNESKNIIVEIALQYTEDDNEIILGFANNVKTIDGGTHLVGFKSGLIRAINDYA-KDQKI 301 Query: 304 KKAKVSATGDDAREGLIAVVSVKVPDP--KFSSQTKDKLVSSEVKSAVEQQMNELLAEYL 361 K K +D REGL+A+V+VK+P+ ++ QTK KL +S+ K+ VEQ + E ++ +L Sbjct: 302 LKDKTKLDSNDLREGLVAIVTVKIPENLIEYEGQTKSKLGTSDAKTVVEQIVYEFMSYWL 361 Query: 362 LENPTDAKIVVGKIIDAARAREAARRAREMTRR-KGALDLAGLP-GKLADCQERDPALSE 419 +EN A V+ ++A +AR AA++AR+ + KG ++ L GKL Q + L+E Sbjct: 362 IENKVLANKVIENALNAQKARIAAKQARQAIKSVKGKKNVNKLMLGKLTPAQGKKRELNE 421 Query: 420 LYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIG 479 LYLVEGDSAGGSAK GR+R QAILPL+GK++N EKA+ +L ++E+ ++I A+G G+G Sbjct: 422 LYLVEGDSAGGSAKSGRDRNFQAILPLRGKVINSEKAKLVDLLKNEEIQSIINAIGAGVG 481 Query: 480 RDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK- 538 +D ++ + Y IIIMTDAD DG+HI+TLLLTFFYR M +++ VYIA PPLYK+ Sbjct: 482 KD-FDISDINYGKIIIMTDADTDGAHIQTLLLTFFYRHMKDLIIHKKVYIALPPLYKITF 540 Query: 539 KGKQEQYIKDDEAMDQYQ 556 K Y+ D+E ++++ Sbjct: 541 NDKSFIYLWDEEELNKFN 558 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 39/77 (50%), Positives = 59/77 (76%) Query: 720 EQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTT 779 E+ L+ K + + IQRYKGLGEMN +QLW+TTMDP++R++++VT+ D + A+++F T Sbjct: 551 EEELNKFNKTNTKKYEIQRYKGLGEMNADQLWQTTMDPKNRKIIQVTISDGLLAERMFKT 610 Query: 780 LMGDAVEPRRAFIEENA 796 LMGD VE R+ +I+EN Sbjct: 611 LMGDDVEKRKLWIQENV 627 >UniRef50_C4G1I8 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G1I8_ABIDE Length = 677 Score = 487 bits (1254), Expect = e-136, Method: Compositional matrix adjust. Identities = 250/548 (45%), Positives = 355/548 (64%), Gaps = 19/548 (3%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGT-GLHHMVFEVVDNAIDEALAGHCKEI 59 MS +YD S I +L+GL+AVRKRPGMYIG T GT GLHH+++E++DN IDE LAG C +I Sbjct: 1 MSENYDGSQIVILEGLEAVRKRPGMYIGST--GTRGLHHLIWEILDNGIDEHLAGFCSQI 58 Query: 60 IVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 119 + + D ++++D GRG+P IHP + + V+ TVLHAGGKF +YKVSGGLHGVG Sbjct: 59 DLILRNDGGITIRDYGRGVPVDIHPTKKIPTERVVYTVLHAGGKFSGGAYKVSGGLHGVG 118 Query: 120 VSVVNALSQKLELVIQREGKIHRQIYEHG--------VPQAPLAVTGETEKTGTMVRFWP 171 SVVNALS K+ + I+R+G ++ YE+G + P T + GT V F+P Sbjct: 119 ASVVNALSTKMIVEIRRDGNVYVDEYENGGHPVTALVKGELPAVKTCKKSDKGTSVTFYP 178 Query: 172 SLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNK 231 +T EF+ +I+ K+L+E +FLN G+ + +D+ G+E + + GIK++V+Y+N+ Sbjct: 179 D-DTIFETIEFKADIIKKKLKETAFLNKGLKLNFKDEITGEEKTYEEKDGIKSYVKYINR 237 Query: 232 NKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTR 291 IH + Y E I VEVA Q+ +GF E I + N I DGGT + GF+ A+TR Sbjct: 238 ETEVIHDEVVYVEGESGDIEVEVAFQYTNGFSEQINAYCNRINVVDGGTLVTGFKTALTR 297 Query: 292 TLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQ 351 +N Y + GY K + G D R G++A++S+K PDP+F QTK KL +++ K+AVE+ Sbjct: 298 VMNQYARELGYLKGKDDNFDGKDIRNGIVAIISIKHPDPQFEGQTKTKLGNTDAKTAVEE 357 Query: 352 QMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRK--GALDLAGLPGKLAD 409 +++ + Y +N V+ I+D A+ +AR A + R +L+ + KLA Sbjct: 358 VVSKEIVRYFDKNIE----VLKSILDLAQKSYSARTASDKARNAVLKSLNDFDVKSKLAS 413 Query: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 C ++ E+YLVEGDSAGG+ K RNRK QA+LPL+GKILNVEKA +K+L + E+ + Sbjct: 414 CSSKNAEECEIYLVEGDSAGGTVKTARNRKTQAVLPLRGKILNVEKAALEKILVNNEIKS 473 Query: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 +I GCGIG DE++ KLRY III+TDADVDG+HI TLLLTFFYR MP++++ G +Y Sbjct: 474 MIATFGCGIG-DEFDITKLRYDKIIILTDADVDGAHISTLLLTFFYRFMPDLIKEGKIYR 532 Query: 530 AQPPLYKV 537 PPLYKV Sbjct: 533 GLPPLYKV 540 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 38/76 (50%), Positives = 53/76 (69%), Gaps = 1/76 (1%) Query: 729 ESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPR 788 ++R+ L IQRYKGLGEM+ QLWETT+DP++R + R+ + D + AD++ + LM V PR Sbjct: 603 KNRKILEIQRYKGLGEMDASQLWETTLDPKTRSLARIDISDTVEADEVTSLLMSSVVPPR 662 Query: 789 RAFIEENALKAANIDI 804 R FI N K A +DI Sbjct: 663 REFI-MNEAKYAKVDI 677 >UniRef50_B9ZQ26 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZQ26_9GAMM Length = 650 Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust. Identities = 255/567 (44%), Positives = 362/567 (63%), Gaps = 18/567 (3%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 + Y S SI+VL+GL+ VRKRPGMYIG TD +GL H++ E++DNA+DEA+AGH EI V Sbjct: 8 ARQYTSESIQVLEGLEPVRKRPGMYIGGTD-SSGLRHLLNEILDNAVDEAIAGHGDEIEV 66 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 H D S SV D+GRGIP +H E+G+ AA +++T LHAGGKFD+ +YKVSGGLHGVG + Sbjct: 67 VFHQDGSYSVNDNGRGIPIDMHREKGMHAAALLVTTLHAGGKFDNAAYKVSGGLHGVGAA 126 Query: 122 VVNALSQKLELVIQREGKIHRQIY-EHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVT 180 V NA+S + ++ I+R+G+ ++Q + E G P P TGT++RFWP L F Sbjct: 127 VTNAMSTRFDMDIRRDGQRYQQTFTEGGAPSDPEIKRYTGSYTGTLIRFWPDLARFDEDA 186 Query: 181 EFEYEILAKRLRELSFLNSGVSIRLRDK------RDGKEDHFHYEGGIKAFVEYLNKNKT 234 E +++ +A R++ ++L G+ + +R++ + ++ F +E +E L+ + Sbjct: 187 EIDFDFMADRMKRTAYLVPGLQLSIREEVASEGGDEPRQAVFRFE-SFSQIIEDLSVDSG 245 Query: 235 PIHPNIFYFSTEK--DGIG---VEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 I + + DG G V VAL+W++ + + + N IP D GTH+ G R A+ Sbjct: 246 DAISEIIEADSAEHIDGQGEIEVAVALRWHERNRTVLAGYANIIPTAD-GTHMTGLRKAV 304 Query: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 T+ +N Y + + + GDD + GLIA V+V++ DP F QTK+KL + V V Sbjct: 305 TQAVNNYAEANNLLRGNQ-ELKGDDIQAGLIAAVAVRLADPLFQGQTKEKLKNGPVTGVV 363 Query: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREM-TRRKGALDLAGLPGKLA 408 + + L ENP A+ +V K A +AREAA +A EM RK + LPGKLA Sbjct: 364 SRAIRAALDHAFEENPKMARAIVEKAKLAQKAREAADKAAEMVVNRKSVISATALPGKLA 423 Query: 409 DCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 468 DCQE+DP+ SEL++VEGDSAGGSAK GR R+ QAILPLKGKILN +A K+L S EV Sbjct: 424 DCQEQDPSKSELFIVEGDSAGGSAKSGREREYQAILPLKGKILNTYRADPAKVLKSDEVK 483 Query: 469 TLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVY 528 L+ ALGCG + ++ +KLRYH I+I+ DAD DG HI TL+LT+F+ PE++E G+VY Sbjct: 484 NLMLALGCG-PKSHFDLEKLRYHRIVILADADSDGHHIATLVLTYFHTNAPELIESGYVY 542 Query: 529 IAQPPLYKVKKGKQEQYIKDDEAMDQY 555 IA PPLY+V+KGKQ Y+KDD ++ + Sbjct: 543 IALPPLYRVRKGKQSAYLKDDRELEAF 569 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 40/71 (56%), Positives = 49/71 (69%), Gaps = 3/71 (4%) Query: 736 IQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDA--IAADQLFTTLMGDAVEPRRAFIE 793 +QR+KGLGEMN EQLWE MDPE+RR+ RV + +++F LMG V PRRAFIE Sbjct: 581 VQRFKGLGEMNAEQLWEAAMDPETRRIARVQYSEQGREGDNEVFEVLMGAEVPPRRAFIE 640 Query: 794 ENALKAANIDI 804 E A KA ID+ Sbjct: 641 EYAEKAV-IDV 650 >UniRef50_D0MI55 DNA topoisomerase (ATP-hydrolyzing) n=8 Tax=Bacteria RepID=D0MI55_RHOM4 Length = 648 Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust. Identities = 261/564 (46%), Positives = 364/564 (64%), Gaps = 17/564 (3%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 ++ +Y I+VL+GL+ VRKRPGMYIG T GLHH+++E+VDNA+DEA+ G I Sbjct: 4 LAATYTGKDIQVLEGLEPVRKRPGMYIGGTGK-PGLHHLLWEIVDNAVDEAVNGFASLIE 62 Query: 61 VTIHADN-SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 119 VT+HAD SV+V D+GRGIP HP + + E+I+T LHAGGKFD +Y SGGLHGVG Sbjct: 63 VTLHADGRSVTVTDNGRGIPVDPHPVKKIPTLELILTTLHAGGKFDRKNYITSGGLHGVG 122 Query: 120 VSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGE-TEKTGTMVRFWPSLETFTN 178 SVVNALS++L ++R+GK ++Q + G P+ L V E T TGT + F P E F Sbjct: 123 ASVVNALSEELVATVKRDGKTYQQRFVRGKPKTKLKVVAENTRGTGTSIYFRPDPEIF-E 181 Query: 179 VTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYL-----NKNK 233 TEF+ + + L ++LN + I +D+ G+ FH+EGGI VEYL + Sbjct: 182 TTEFDPVWIREHLEIKTYLNRNLKIVFKDETSGERYEFHHEGGI---VEYLARLVEEQGA 238 Query: 234 TPIHPNIFYFSTE--KDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTR 291 +HP F E +DG +EVALQW + +E I F N IP +GGTH GF+ A+ Sbjct: 239 RVVHPEPFVLIQEELRDGARLEVALQWTEAPRELIKSFVNGIPTTEGGTHEQGFKEAVRS 298 Query: 292 TLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQ 351 + AYM+ + + T DD REGL+AVV++ + +P+F QTK+KL + E +S V Sbjct: 299 AVRAYMETHDLLPR-NLEVTADDIREGLVAVVNLFMVEPQFQGQTKEKLNNPEARSLVIG 357 Query: 352 QMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALD-LAGLPGKLADC 410 + L ++L +PT A+ +V +II AA+AR A+R A RR+ ++ LPGKLADC Sbjct: 358 AVRLDLEQFLNAHPTMAEAIVARIIQAAKARLASRAAARSVRRQSSVSHRLNLPGKLADC 417 Query: 411 QERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATL 470 +P EL++VEGDSAGGSAKQ R+R+ QA+LPL+GK+LN E+A K+ ++E++ + Sbjct: 418 TSTNPEECELFIVEGDSAGGSAKQARDRRFQAVLPLRGKVLNAEQASLRKVEENKELSNI 477 Query: 471 ITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIA 530 + ALGCGIG D+ + +LRYH II++ DAD DG HI TLLLTFFYR M ++E GHVY+A Sbjct: 478 VQALGCGIG-DKIDLSRLRYHKIILLMDADSDGHHITTLLLTFFYRYMRPLIENGHVYVA 536 Query: 531 QPPLYKVKKGKQEQYIKDDEAMDQ 554 QPPLY++ GK+ + DD D+ Sbjct: 537 QPPLYRIDAGKETYWALDDADRDR 560 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 35/65 (53%), Positives = 44/65 (67%), Gaps = 2/65 (3%) Query: 734 LSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTV-KDA-IAADQLFTTLMGDAVEPRRAF 791 + IQR+KGLGEM P+ L ETT+DP RR+LRV + +DA + +Q T LMG V R F Sbjct: 574 VEIQRFKGLGEMMPDTLRETTLDPRKRRLLRVEIPEDARLLTEQTITELMGRDVSARFRF 633 Query: 792 IEENA 796 I ENA Sbjct: 634 IMENA 638 >UniRef50_A0Q197 DNA topoisomerase IV subunit B n=34 Tax=Clostridium RepID=A0Q197_CLONN Length = 652 Score = 469 bits (1206), Expect = e-130, Method: Compositional matrix adjust. Identities = 244/576 (42%), Positives = 361/576 (62%), Gaps = 34/576 (5%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGT-GLHHMVFEVVDNAIDEALAGHCKEIIV 61 NSYD + + L+ L+ VR RPGMYIG T GT GLHH ++E++DN+IDE G+ ++++ Sbjct: 10 NSYDVTDLTSLEKLEPVRVRPGMYIGST--GTKGLHHCIWEILDNSIDEIANGYGNKVVL 67 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 ++ D SV++ D+GRGIPTGIHP + S E++ T LH GGKF++ +YK SGGLHGVG + Sbjct: 68 ILNKDKSVTIMDNGRGIPTGIHPVKKKSGVEMVFTELHTGGKFNNKNYKTSGGLHGVGAA 127 Query: 122 VVNALSQKLELVIQREGKIHRQIYEH-----------GVPQAPLAVTGETEKTGTMVRFW 170 VVNALS+ LE+ + ++G IH+Q +E+ G P PL + G+TE+TGT + F Sbjct: 128 VVNALSEWLEVEVYQKGHIHKQRFEYAEDKSLNKKMPGTPIFPLKIVGDTERTGTKITFK 187 Query: 171 PSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK--EDHFHYEGGIKAFVEY 228 P E F+ TEF++E++ +RL+EL+F N G+++ ++D+R + E +H E G+ F++Y Sbjct: 188 PDKEVFS-TTEFKFEVIDERLQELAFQNKGITLVIKDERKEEVIEKEYHSERGLLDFIDY 246 Query: 229 LNKNKTPIHPNIFYFSTEKD----GIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAG 284 LN++K PIH + + EK+ + EV +Q+ D ENI + NNIP + GTH G Sbjct: 247 LNESKIPIHKDPLLYEGEKEVNSIKVYCEVCMQFTDSSTENIASYVNNIPTTESGTHETG 306 Query: 285 FRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSE 344 F+ MTR + K K+ GDD REG+ A++ VK+ +P F QTK KL ++E Sbjct: 307 FKTGMTRAFKEWAKKLNIVKEKDKGFEGDDLREGMTAILRVKISNPIFEGQTKTKLGNNE 366 Query: 345 VKSAVEQQMNEL----LAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDL 400 + MNEL + E++ +N A ++ + AA RE ++ + ++K Sbjct: 367 AYTV----MNELAYIKIGEWIEDNKEIATQIINNAVSAAARREKIKKINDAEKKKVGKGT 422 Query: 401 AGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 460 A L GK++ C + P E +VEGDSAGGSAKQ R+R+ Q I+P KGKI+N EK R + Sbjct: 423 APLAGKVSICTLKRPEFCEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQRLEN 482 Query: 461 MLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPE 520 +L+S+E+ A+G G+ + YN D L+Y III++DADVDG HIRTL +T+ YR M Sbjct: 483 VLASEELKLFNAAIGTGV-LENYNEDDLKYDKIIILSDADVDGYHIRTLWITYIYRYMRS 541 Query: 521 IVERGHVYIAQPPLYKV----KKGKQEQYIKDDEAM 552 ++ GH+YIA PPLYKV KKG+ +Y DE + Sbjct: 542 LITNGHLYIALPPLYKVYKNSKKGEISRYAYSDEEL 577 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 36/65 (55%), Positives = 53/65 (81%) Query: 728 KESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEP 787 KE +G IQRYKGLGEMNP+QLW+TT++PE+R + ++T++DA A+++ + LMGD VEP Sbjct: 582 KEIGKGALIQRYKGLGEMNPDQLWDTTLNPETRTLQQITIEDAAKAEKMISLLMGDVVEP 641 Query: 788 RRAFI 792 RR ++ Sbjct: 642 RRNYM 646 >UniRef50_Q9FAX1 DNA gyrase subunit B (Fragment) n=60 Tax=Bacteria RepID=GYRB_FLEEL Length = 478 Score = 464 bits (1193), Expect = e-129, Method: Compositional matrix adjust. Identities = 246/469 (52%), Positives = 327/469 (69%), Gaps = 11/469 (2%) Query: 105 DDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTG 164 D ++YKVSGGLHGVGVS VNALS L + REGK+ +Q Y G PQ + V G++++TG Sbjct: 1 DKDTYKVSGGLHGVGVSCVNALSSLLVATVHREGKVFQQKYSTGNPQGAVEVVGQSDRTG 60 Query: 165 TMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE------DHFHY 218 T + F P F TE++YE ++KRLRELS+LN G+ + L D R+ E + F Sbjct: 61 TTIYFEPDATIFAT-TEYKYETVSKRLRELSYLNKGIRLTLTDLRETDEQGRHLYEEFFS 119 Query: 219 EGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDG 278 EGG+K FVE+L+ + P+ P + I VEVAL +N+ + EN++ + NNI +G Sbjct: 120 EGGLKEFVEHLDSTRQPLLPAPIHVEKTDGDIPVEVALIYNNSYSENVFSYVNNINTHEG 179 Query: 279 GTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKD 338 GTH++GFR A+TRTL +Y DK G +KAKV TGDD REGL AV+S+KV +P+F QTK Sbjct: 180 GTHVSGFRRALTRTLKSYADKSGMLEKAKVEITGDDFREGLTAVISIKVAEPQFEGQTKT 239 Query: 339 KLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGAL 398 KL +S+ AV+ ++E+L YL ENP +AK+++ K+I AA+AR+AAR+AREM +RK + Sbjct: 240 KLGNSDAIGAVDNAVSEILGYYLEENPREAKLIIQKVILAAQARQAARKAREMVQRKNVM 299 Query: 399 DLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARF 458 LPGKLADC + +P ELYLVEGDSAGGSAKQGR+R QAILPL+GKILNVEKA+ Sbjct: 300 GGTSLPGKLADCSDTNPERCELYLVEGDSAGGSAKQGRDRSFQAILPLRGKILNVEKAQE 359 Query: 459 DKMLSSQEVATLITALGCGIGRDE----YNPDKLRYHSIIIMTDADVDGSHIRTLLLTFF 514 K+ ++E+ +ITA+G G +E N KLRYH IIIMTDADVDGSHIRTL+LTFF Sbjct: 360 YKIYDNEEIKNMITAMGVTFGTEEDSKALNLTKLRYHKIIIMTDADVDGSHIRTLILTFF 419 Query: 515 YRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563 +R M E++E+G++Y+A PPLY VKKGK+E+Y D D IA +G Sbjct: 420 FRYMRELIEQGYLYVALPPLYIVKKGKEERYAWSDAERDAIIREIAPEG 468 >UniRef50_Q9X3Y5 DNA gyrase subunit B (Fragment) n=740 Tax=cellular organisms RepID=GYRB_BACMY Length = 404 Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust. Identities = 237/405 (58%), Positives = 301/405 (74%), Gaps = 2/405 (0%) Query: 99 HAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTG 158 HAGGKFD YKVSGGLHGVG SVVNALS +LE+ + R+GKIH Q YE GVP A L V G Sbjct: 1 HAGGKFDGGGYKVSGGLHGVGASVVNALSTELEVFVHRDGKIHYQKYERGVPAADLRVIG 60 Query: 159 ETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKED-HFH 217 ET++TGT+ RF P E FT TE+E++ LA R+REL+FLN + + + DKR+ K+ FH Sbjct: 61 ETDRTGTITRFKPDSEIFTETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFH 120 Query: 218 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRD 277 YEGGIK++VE+LN++K PIH Y KDGI VEVALQ+N+G+ +IY FTNNI + Sbjct: 121 YEGGIKSYVEHLNRSKQPIHEEPVYVDGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYE 180 Query: 278 GGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTK 337 GGTH GF+ A+TR +N Y K K A + TG+D REGL A+VS+K P+P+F QTK Sbjct: 181 GGTHEVGFKTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTK 240 Query: 338 DKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGA 397 KL +SE ++ E +E ++LLENP A+ ++ K AARAR AA++ARE+TRRK A Sbjct: 241 TKLGNSEARTITESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSA 300 Query: 398 LDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 457 L+++ LPGKLADC +DPA+SE+Y+VEGDSAGGSAKQGR+R QAILPLKGKI+NVEKAR Sbjct: 301 LEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKAR 360 Query: 458 FDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVD 502 DK+LS+ EV T+ITA+G IG D + +K RYH +IIMTDADVD Sbjct: 361 LDKILSNDEVRTIITAIGTNIGGD-FAIEKARYHKVIIMTDADVD 404 >UniRef50_C6PY14 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PY14_9CLOT Length = 653 Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust. Identities = 242/571 (42%), Positives = 359/571 (62%), Gaps = 24/571 (4%) Query: 5 YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIH 64 YD +++ L+ L+ VR RPGMYIG T GLHH ++E++DN+IDE G + IV ++ Sbjct: 11 YDVTALTSLEKLEPVRVRPGMYIGSTG-SKGLHHCIWEILDNSIDEISNGFGDKAIVILN 69 Query: 65 ADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN 124 D SV++ D+GRGIPTGIHP + S E++ T LH GGKF+++ YK SGGLHGVG +VVN Sbjct: 70 KDKSVTIIDNGRGIPTGIHPVKKKSGVEMVFTELHTGGKFNNDVYKTSGGLHGVGAAVVN 129 Query: 125 ALSQKLELVIQREGKIHRQIYEH-----------GVPQAPLAVTGETEKTGTMVRFWPSL 173 ALS+ + + I++ G I+ Q +E+ G P L + G T++TGT V F P Sbjct: 130 ALSKWVVVEIKQNGHIYTQRFEYAYDKSLKRDMPGTPVTALKIAGNTKETGTKVTFLPDK 189 Query: 174 ETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK--EDHFHYEGGIKAFVEYLNK 231 + F+N TEF+++++ +RL+EL+F N G+++++ DKR+ + E +H E G+ F+EYLN+ Sbjct: 190 DVFSN-TEFKFDVIDERLQELAFQNKGITLKIIDKREDEVVEKEYHSERGLLDFIEYLNE 248 Query: 232 NKTPIH--PNIFYFSTEKDGIGV--EVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRA 287 +KT +H P +F E +GI + EV +Q+ D E I + NNIP + GTH +GF+A Sbjct: 249 SKTALHTPPILFEGEREVNGISMYSEVCVQFTDSTTEYIASYVNNIPTTESGTHESGFKA 308 Query: 288 AMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKS 347 MTR + K K+ GDD REG+ A+V +K+ +P F QTK KL ++E + Sbjct: 309 GMTRAFKEWTKKLNLLKEKDKEFEGDDLREGMTAIVRIKITNPIFEGQTKTKLGNTEAYT 368 Query: 348 AVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKL 407 + +E++ +N A ++ IDAA RE ++ E ++K A L GK+ Sbjct: 369 MMNDLAYTKFSEWIEDNKDTASSIINNAIDAAARREKIKKINEAEKKKIGKGTAPLAGKI 428 Query: 408 ADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEV 467 A C +DP+ SE +VEGDSAGGSAKQ R+R+ Q I+P KGKI+N EK + + +L S+E+ Sbjct: 429 AVCTLKDPSFSEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQKLENVLGSEEL 488 Query: 468 ATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHV 527 TA+G G+ ++ Y L+Y+ IIIM+DADVDG HIRTL +T+ YR M +I+ GH+ Sbjct: 489 KIFNTAIGTGVLQN-YKEQDLKYNKIIIMSDADVDGYHIRTLWMTYIYRYMRQIISNGHL 547 Query: 528 YIAQPPLYKVKKGKQEQ----YIKDDEAMDQ 554 YIA PPLYKV K + + Y DE +++ Sbjct: 548 YIALPPLYKVYKQNKNKEIVRYAYSDEELEK 578 Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 35/70 (50%), Positives = 55/70 (78%) Query: 728 KESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEP 787 K+ +G IQRYKGLGEMNP+QLWETT++PE+R + ++T++DA A+++ + LMGD V P Sbjct: 581 KQVGKGALIQRYKGLGEMNPDQLWETTLNPETRTLQQITIEDAAKAEKMVSLLMGDVVAP 640 Query: 788 RRAFIEENAL 797 R+ ++ + A+ Sbjct: 641 RKNYMYKYAV 650 >UniRef50_P94281 DNA gyrase subunit B n=211 Tax=cellular organisms RepID=GYRB_BARBK Length = 692 Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust. Identities = 252/564 (44%), Positives = 363/564 (64%), Gaps = 18/564 (3%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 ++Y++SSI++L+GL+ VR RPGMYIG TD LHH+ E++DNA+DEA+AG+ I +T Sbjct: 51 STYNASSIRILEGLEPVRLRPGMYIGGTD-SKALHHLFSEIIDNAMDEAVAGYADLIDIT 109 Query: 63 IHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 + ++N ++V D+GRGIP HP+ S EVIMT LH+GGKFD +Y+ SGGLHGVG+S Sbjct: 110 LDSNNYLTVTDNGRGIPIENHPQIPDKSTLEVIMTHLHSGGKFDGKAYQTSGGLHGVGIS 169 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGET-EKTGTMVRFWPSLETFTNVT 180 VVNALS +E+ + RE K++RQ + G+PQ+ L G+ + GT V F P + F T Sbjct: 170 VVNALSDDMEVEVARERKLYRQRFSRGIPQSGLEELGDVYNRRGTRVCFHPDSQIFGENT 229 Query: 181 EFEYEILAKRLRELSFLNSGVSIR-------LRDKRDGKE-DHFHYEGGIKAFVEYLNKN 232 F+ E + K R ++L +GV IR L+D ++ E D F++ G+K ++ KN Sbjct: 230 AFDPEKIYKIARSKAYLFNGVKIRWNCDPAALKDAKNIPEKDVFYFPDGLKDYLSLSLKN 289 Query: 233 KTPIHPNIFYFSTEK-DGIG-VEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMT 290 K + IF T++ G G VE A+ W++G I + N IP +GGTH G R + Sbjct: 290 KHLVTAEIFSGKTQQLSGHGSVEWAIAWHNG-DAYIQSYCNTIPTEEGGTHETGLRQTLL 348 Query: 291 RTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVE 350 R L AY + G +K+A + T DD + ++SV + DP+F QTKD+L ++E + VE Sbjct: 349 RGLKAYAELIG-NKRASI-ITSDDVMASTVVMLSVFIKDPQFVGQTKDRLATTEAQRIVE 406 Query: 351 QQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADC 410 + + +L +P +A ++ +I+ A R R+ RE+ R+ L LPGKLADC Sbjct: 407 NAIRDPFDHWLANSPHEATKLLNWVIERAEERLKRRQDREINRKTAVRKLR-LPGKLADC 465 Query: 411 QERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATL 470 + A +EL++VEGDSAGGSAKQ RNR NQAILPL+GKILNV A +KM SSQ +A L Sbjct: 466 SQNSAAGAELFIVEGDSAGGSAKQARNRTNQAILPLRGKILNVASAAREKMSSSQTIADL 525 Query: 471 ITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIA 530 I ALGCG R +Y + LRY IIIMTDADVDG+HI +LL+TFF++++P+++ GH+Y+A Sbjct: 526 ILALGCGT-RSKYREEDLRYERIIIMTDADVDGAHIASLLITFFFQEIPDLIRAGHLYLA 584 Query: 531 QPPLYKVKKGKQEQYIKDDEAMDQ 554 PPLY++ +G + Y +DD D+ Sbjct: 585 VPPLYRISQGGKVAYARDDSHKDE 608 Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 2/73 (2%) Query: 734 LSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVK--DAIAADQLFTTLMGDAVEPRRAF 791 + I R+KGLGEM EQL ETTM+P+ R +LRV++ + + LMG E R F Sbjct: 620 IEIGRFKGLGEMRAEQLKETTMNPKKRTLLRVSIDTFEMQETKETVQNLMGTKPEERFRF 679 Query: 792 IEENALKAANIDI 804 I+E++ A N+DI Sbjct: 680 IQESSTFANNLDI 692 >UniRef50_Q9FAX2 DNA gyrase subunit B (Fragment) n=166 Tax=root RepID=GYRB_FLEJA Length = 481 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 244/460 (53%), Positives = 312/460 (67%), Gaps = 15/460 (3%) Query: 105 DDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTG 164 D N+YKVSGGLHGVGVS VNALS L + + REGKI Q Y GVPQ + G T TG Sbjct: 1 DKNTYKVSGGLHGVGVSCVNALSTVLHVTVHREGKIFEQEYHRGVPQYAVREIGATTDTG 60 Query: 165 TMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE------DHFHY 218 T F P E FT T + EILA RLREL++LN + I L D+R+ E + F+ Sbjct: 61 TTTHFKPDGEIFTE-TSYNREILAGRLRELAYLNRKIRITLTDEREKDEQGNVLSEPFYS 119 Query: 219 EGGIKAFVEYLNKN--KTPIHPNIFYFSTEK--DGIGVEVALQWNDGFQENIYCFTNNIP 274 EGGI FV+ L++N + + P + + VEV+LQ+ND F ENI+ + NNI Sbjct: 120 EGGIMEFVQMLDRNGRRNSLLPAPIFIEAHDAPSNVAVEVSLQYNDSFSENIFSYVNNIN 179 Query: 275 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 334 +GGTH+AGFR A+TR Y D+ +K+K+ TGDD REGL A+VSVKVP+P+F Sbjct: 180 TIEGGTHVAGFRRAITRVFKTYGDRNKLFEKSKIEVTGDDFREGLSAIVSVKVPEPQFEG 239 Query: 335 QTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRR 394 QTK KL +S+V V+ + ++L YL E+P +A+ V+ K++ AA+AREAAR+AR++ +R Sbjct: 240 QTKTKLGNSDVMGVVDSAVADVLNAYLEEHPKEARTVINKVVLAAQAREAARKARQLVQR 299 Query: 395 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 454 K L +GLPGKLADC E DP ELYLVEGDSAGG+AKQGRNR QAILPL+GKILNVE Sbjct: 300 KSVLTGSGLPGKLADCSENDPEKCELYLVEGDSAGGTAKQGRNRAFQAILPLRGKILNVE 359 Query: 455 KARFDKMLSSQEVATLITALGCGIGRDE----YNPDKLRYHSIIIMTDADVDGSHIRTLL 510 KA K+ ++E+ + TALG IG +E N KLRYH +IIMTDADVDGSHI TL+ Sbjct: 360 KAMEHKIYENEEIKNIFTALGVTIGTEEDDKALNLSKLRYHKLIIMTDADVDGSHIATLI 419 Query: 511 LTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDE 550 LTF +R M +VE+G+VYIAQPPLY VKKGK++ Y +E Sbjct: 420 LTFVFRYMKALVEQGYVYIAQPPLYLVKKGKEQIYAWTEE 459 >UniRef50_Q2S2H3 Type II DNA topoisomerase, B subunit n=3 Tax=Bacteria RepID=Q2S2H3_SALRD Length = 643 Score = 450 bits (1158), Expect = e-125, Method: Compositional matrix adjust. Identities = 252/624 (40%), Positives = 380/624 (60%), Gaps = 13/624 (2%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 M +Y I VL+GL+ VRKRPGMYIG T GLHH+++EVVDNA+DEA G+ I Sbjct: 1 MPTTYTGEDIDVLEGLEPVRKRPGMYIGGTGR-PGLHHILWEVVDNAVDEATNGYASRIE 59 Query: 61 VTIHADN-SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 119 V +H D S+SV D+GRGIP HPE+GV ++I+T LH+GGKFD ++Y SGGLHGVG Sbjct: 60 VVLHEDGESISVSDNGRGIPVDDHPEKGVPTVQLILTTLHSGGKFDGSNYITSGGLHGVG 119 Query: 120 VSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTN 178 VSVVNALS++L ++R+G+ ++Q + G P L T E+ + TGT + F P + F + Sbjct: 120 VSVVNALSEELVATVKRDGQEYQQRFRQGTPVTGLDTTKESARGTGTDIYFRPDPDIFES 179 Query: 179 VTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKN--KTPI 236 V EF+ + + L ++LN + I RD+ + H+EGGI+ +++YL ++ +PI Sbjct: 180 V-EFDPSWIREHLDVKTYLNRDLKIIFRDETSNERYELHHEGGIQEYLDYLVEDLQVSPI 238 Query: 237 HPNIFYF--STEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLN 294 H ++F +E+ALQW D +E ++ F N IP DGGTH G ++ + + Sbjct: 239 HDDVFMMEDDDLDGDGRLEIALQWTDAPKEQLHTFVNGIPTEDGGTHEQGLKSGIRAVIR 298 Query: 295 AYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMN 354 ++MD ++ GDD REGL+ +V++ DP+F QTKDKL + V+S V + Sbjct: 299 SFMDTHDLVPH-RLEIKGDDTREGLVGIVNLFHVDPQFQGQTKDKLNNPSVRSQVSGALR 357 Query: 355 ELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLA-GLPGKLADCQER 413 L +YL ++ + + + +++ AA+AR A R A + + LPGKLADC Sbjct: 358 TELEQYLNDHSSTGEAIASRVVQAAKARRARRSASGGSSGRSGSKSRLQLPGKLADCSSS 417 Query: 414 DPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITA 473 P+ EL++VEGDSAGGSAKQ R+R+ QA+LPL+GK+LN E+A D++ +++E++ ++ A Sbjct: 418 TPSECELFIVEGDSAGGSAKQARDRETQAVLPLRGKVLNAEQATLDRVQNNKELSNIVQA 477 Query: 474 LGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPP 533 LGCGIG D + LRY +I++ DAD DG HI TLLLTFFYR M ++E G V+IAQPP Sbjct: 478 LGCGIG-DALDLSDLRYRKVILLMDADSDGHHIATLLLTFFYRYMRPLIEGGFVHIAQPP 536 Query: 534 LYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKM 593 LY+++ GK+ + D+ +Q I DG + + GE + ++E + + Sbjct: 537 LYRIEAGKETHWALDEPDKEQILDEIRSDGRNPNVDIQRFKGLGEMMPDTLNETTLSPEG 596 Query: 594 INRMERRYPKAMLKELIYQPTLTE 617 +E P + ++ + T+TE Sbjct: 597 RRLLEVSIPDT--ERMVTEQTITE 618 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 37/88 (42%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 720 EQALDWLVKESRR-GLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDA--IAADQL 776 EQ LD + + R + IQR+KGLGEM P+ L ETT+ PE RR+L V++ D + +Q Sbjct: 556 EQILDEIRSDGRNPNVDIQRFKGLGEMMPDTLNETTLSPEGRRLLEVSIPDTERMVTEQT 615 Query: 777 FTTLMGDAVEPRRAFIEENALKAANIDI 804 T LMG R FI ++A +A +D+ Sbjct: 616 ITELMGRDSSARFKFIMQHAAEADELDV 643 >UniRef50_A1SCM1 DNA gyrase subunit B n=28 Tax=Actinomycetales RepID=A1SCM1_NOCSJ Length = 711 Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust. Identities = 275/586 (46%), Positives = 385/586 (65%), Gaps = 48/586 (8%) Query: 5 YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIH 64 YD+S+I+VL+GL+AVRKRPGMYIG T + GLHH+++E+VDNA+DEALAG+C I++T+ Sbjct: 32 YDASAIQVLEGLEAVRKRPGMYIGSTGE-RGLHHLIWEIVDNAVDEALAGYCDRIVLTLL 90 Query: 65 ADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN 124 AD + V+D+GRGIPTG P + + A + +TVLHAGGKF YKVSGGLHGVGVSVVN Sbjct: 91 ADGGIRVEDNGRGIPTGTAPGQELPALTLALTVLHAGGKFGGGGYKVSGGLHGVGVSVVN 150 Query: 125 ALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK---TGTMVRFWPSLETFTNVTE 181 ALS +L ++ G + RQ + GVP L E TGT + +W S + F T Sbjct: 151 ALSTRLVAEVKNRGHLWRQSFSAGVPDGELEQVRPVEPDEGTGTTITYWASPDIFETTTH 210 Query: 182 FEYEILAKRLRELSFLNSGVSIRLRDKR-------DGKEDH------------------- 215 E + R+RE +FLN G+ I +RD+R D ED Sbjct: 211 -SLETITSRIREYAFLNKGLEIVVRDERPAAAEIVDAVEDDTVDPDHRGGIDDAGHDAIK 269 Query: 216 ----------FHYEGGIKAFVEYLNKNKTPIHPNIFYFSTE-----KDGIGVEVALQWND 260 F Y+ G+ +VE+LN+ KT +P + F E ++ + +EVA+QWN Sbjct: 270 RGEGGALEQIFKYDRGLIDYVEHLNRRKTAANPTVIAFEAETPESVENHMSLEVAMQWNT 329 Query: 261 GFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLI 320 F E+++ F N I +GGTH GFRAA+T +N + + G KK + +GDD REGL Sbjct: 330 SFSESVHTFANTINTHEGGTHEEGFRAALTSLVNNWGFEWGLMKKPEDRVSGDDIREGLT 389 Query: 321 AVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAAR 380 A++S+K+ +P+F QTK KL ++E K V++ +N+ L +L +NP + + +V K AA Sbjct: 390 AIISIKLGEPQFEGQTKTKLGNTEAKGFVQRLVNDQLGAWLEQNPAEGRDIVRKAQAAAS 449 Query: 381 AREAARRAREMTR-RKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRK 439 AR AAR+AR++ R RKG L GLPGKL+DCQ +PA E+++VEGDSAGGSA+QGR+ + Sbjct: 450 ARIAARKARDLARSRKGLLGGGGLPGKLSDCQSTNPAECEVFIVEGDSAGGSARQGRDPR 509 Query: 440 NQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDA 499 QAILP++GKILNVEKAR DK+LS+QEV ++I+ALG GI +DE++ +KLRYH +++M DA Sbjct: 510 IQAILPIRGKILNVEKARIDKVLSNQEVQSIISALGTGI-QDEFDIEKLRYHKVVLMADA 568 Query: 500 DVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQY 545 DVDG HI TLLLT +R M ++E G+VY+AQPPLY+++ K ++ Sbjct: 569 DVDGHHINTLLLTLLFRFMKPLIEGGYVYMAQPPLYRLRWNKPHEH 614 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 42/69 (60%), Positives = 54/69 (78%) Query: 736 IQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEEN 795 +QRYKGLGEMN ++LWETTMDPE R ML+VT+ DA AD++F+ LMG+ VE RR+FI+ N Sbjct: 643 VQRYKGLGEMNAKELWETTMDPEQRLMLQVTLDDAAHADEIFSILMGEDVEQRRSFIQRN 702 Query: 796 ALKAANIDI 804 A +DI Sbjct: 703 AKDVRFLDI 711 >UniRef50_Q18GY2 DNA gyrase subunit B n=10 Tax=cellular organisms RepID=Q18GY2_HALWD Length = 852 Score = 447 bits (1151), Expect = e-124, Method: Compositional matrix adjust. Identities = 243/432 (56%), Positives = 308/432 (71%), Gaps = 9/432 (2%) Query: 5 YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIH 64 Y + I+VL+GL+AVRKRP MYIG TD GLHH+V+EVVDNAIDEALAGHC +I VT+H Sbjct: 7 YGAGDIQVLEGLEAVRKRPAMYIGSTD-SRGLHHLVYEVVDNAIDEALAGHCDQIDVTLH 65 Query: 65 ADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN 124 D SVSV D+GRGIP H + + A EVIMTVLHAGGKFD+ SY+VSGGLHGVGVSVVN Sbjct: 66 EDGSVSVADNGRGIPVDTHEQHDIPAVEVIMTVLHAGGKFDNKSYQVSGGLHGVGVSVVN 125 Query: 125 ALSQKLELVIQREGKIHRQIYEHGVPQAPLAV-----TGETEKTGTMVRFWPSLETFTNV 179 ALS+ LE+ I+R+G + R +E+G PQ P A E+TGT +RFWPS + F Sbjct: 126 ALSRWLEVEIKRDGALWRDRFEYGEPQ-PGAFERVRDLDPDEETGTTIRFWPSDDIF-ET 183 Query: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPN 239 TEFE+ L RLREL+FLNSGV I + + D F + GGI+ FV+YL++ KT +H + Sbjct: 184 TEFEFSTLENRLRELAFLNSGVEICINGETDDINSKFCFNGGIREFVKYLDETKTVLHDS 243 Query: 240 IFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDK 299 + ++ E+DGI VEVALQ + Q +I+ F NNI R+GGTHL GF+ A+TR +N Y + Sbjct: 244 VVHYQNEQDGIEVEVALQATEELQGSIHAFANNINTREGGTHLTGFKTALTRVINDY-GR 302 Query: 300 EGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAE 359 E S G+D REGL AVVS+K PDP+F QTK KL +S+V+ VE +E L Sbjct: 303 EHNLLDGFDSLQGEDVREGLTAVVSIKHPDPQFEGQTKTKLGNSDVRGIVESTTHERLGT 362 Query: 360 YLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSE 419 YL ENP AK++V K ++AA+AR+AA++A E+TRRK AL+ LPGKLADCQ RDPA SE Sbjct: 363 YLEENPDVAKVIVRKAVEAAKARKAAKQAEELTRRKSALESTSLPGKLADCQSRDPAESE 422 Query: 420 LYLVEGDSAGGS 431 L++VEGDSAGG Sbjct: 423 LFIVEGDSAGGC 434 Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 76/144 (52%), Positives = 97/144 (67%), Gaps = 11/144 (7%) Query: 415 PALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAL 474 P L G SAKQGR R+ QAILPLKGKILNVEK R D++L + EV LITA+ Sbjct: 633 PVTHNFALASGVFVHNSAKQGRERRFQAILPLKGKILNVEKHRLDRILENDEVRALITAI 692 Query: 475 GCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPL 534 G GIG DE+N + RY+ +II++DADVDG+HIRTLLLT YR M +VE G+VY A+PPL Sbjct: 693 GAGIG-DEFNVEDARYNRLIILSDADVDGAHIRTLLLTLLYRHMRPLVEAGYVYAAKPPL 751 Query: 535 YKVK----------KGKQEQYIKD 548 Y+++ K +++Q I D Sbjct: 752 YRIRYNGNTYDAMTKSERDQVISD 775 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 43/69 (62%), Positives = 59/69 (85%) Query: 736 IQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEEN 795 +QR+KGLGEMNPEQLWETTM+PE+R + ++T++DA AAD++F+ LMGDAVEPR+ FI++ Sbjct: 784 VQRFKGLGEMNPEQLWETTMNPENRVLKQITIEDAAAADKMFSVLMGDAVEPRKEFIKDR 843 Query: 796 ALKAANIDI 804 A A +DI Sbjct: 844 ATDAEWVDI 852 >UniRef50_Q59526 DNA topoisomerase 4 subunit B n=9 Tax=Bacteria RepID=PARE_MYCGA Length = 633 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 257/568 (45%), Positives = 364/568 (64%), Gaps = 25/568 (4%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 M ++Y+ IKVLKGL+ VRKRPGMYIG TD GLHH+V+E+ DNA+DEAL G +I Sbjct: 1 MVSNYNEKHIKVLKGLEPVRKRPGMYIGSTDT-RGLHHLVWELFDNAVDEALNGSANKIE 59 Query: 61 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 V D S+ V D+GRGIP G + +S + + TVLHAGGKFDD +YKVSGGLHGVG Sbjct: 60 VVHKKDGSIIVTDNGRGIPVGKNLATNLSTVDTVYTVLHAGGKFDDQAYKVSGGLHGVGA 119 Query: 121 SVVNALSQKLELVIQREGKIHRQIYEHG--VPQAPLAVTGETEKTGTMVRFWPSLETFTN 178 SVVNALS+KL + + R+G ++ IY+ G + Q PL G + K GT+V+FWP F N Sbjct: 120 SVVNALSRKLIVTVHRDGGMYESIYQDGGKIIQ-PLKKVGNSTKHGTIVQFWPDPTIFKN 178 Query: 179 VTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK-EDHFHYEGGIKAFVEYLNKNKTPIH 237 + +F ++ +RL E SFL G+ I D+ + + F + GI +++Y+N+NK I Sbjct: 179 I-QFNPYMIKERLHESSFLFKGLKIVFVDENNPELSQTFIAKDGILEYLKYVNENKKSI- 236 Query: 238 PNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYM 297 I F + + I V+ Q+ D E I F N++ +GG+H GF+ AM T+N Sbjct: 237 SKIIPFKGDYEKIVVDGCFQYTDNESELIISFANSVKTSEGGSHENGFKQAMLETIN--- 293 Query: 298 DKEGYSKKAKVSATGD------DAREGLIAVVSVKVPDP--KFSSQTKDKLVSSEVKSAV 349 YSKK K+ D D +EGL V+SV+VP+ + QTK+KL + EVK AV Sbjct: 294 ---DYSKKYKLINNKDKGFDWSDLKEGLSVVLSVQVPEKIIAYEGQTKNKLFTQEVKVAV 350 Query: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRR-KGALDLAGLPGKLA 408 + + + L +L EN DAK ++ + A+EAA++A+E T++ K A L GKL Sbjct: 351 AKILTQQLFYFLEENQADAKQLIERFKLIKEAKEAAKKAKENTKKLKSAKSERVLYGKLT 410 Query: 409 DCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 468 Q+++P +E++LVEGDSAGG+AK GR+++ QAILPL+GK++NVEK+R +L ++E+ Sbjct: 411 PAQQKNPLQNEIFLVEGDSAGGTAKSGRDKRFQAILPLRGKVVNVEKSRLQDLLKNEEIL 470 Query: 469 TLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVY 528 ++I+ LGCGIG + +N L+YH IIIMTDAD DG+HI+ LLLTFFYR M E++E+G VY Sbjct: 471 SIISCLGCGIGNN-FNIKNLKYHKIIIMTDADTDGAHIQVLLLTFFYRYMKELIEQGKVY 529 Query: 529 IAQPPLYKV--KKGKQEQYIKDDEAMDQ 554 IA PLYK+ K + + DD +D+ Sbjct: 530 IALAPLYKISAKNSNKSAFAWDDYQLDE 557 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 31/61 (50%), Positives = 45/61 (73%) Query: 736 IQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEEN 795 +QRYKGLGEMN EQLW TTMDP R++++V++++A A++ + LMGD R+ +I EN Sbjct: 567 VQRYKGLGEMNSEQLWTTTMDPSKRQLIQVSIQNAAQAERKVSILMGDDASIRKNWINEN 626 Query: 796 A 796 Sbjct: 627 V 627 >UniRef50_A8LVU4 DNA gyrase subunit B domain protein n=37 Tax=Actinomycetales RepID=A8LVU4_SALAI Length = 730 Score = 444 bits (1143), Expect = e-123, Method: Compositional matrix adjust. Identities = 245/583 (42%), Positives = 350/583 (60%), Gaps = 43/583 (7%) Query: 5 YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIH 64 Y++ + L+GLDAVRKRPGMYIG TD G+ H+V E++DN+ DE +AGH I VT+H Sbjct: 54 YEADDLTHLEGLDAVRKRPGMYIGSTDS-RGVGHLVNEILDNSTDEGVAGHATSIEVTLH 112 Query: 65 ADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN 124 AD SV V DDGRGIPT +H + G+S E+++T LHAGGKF + YK SGGLHGVG S VN Sbjct: 113 ADGSVQVDDDGRGIPTDVHAKSGISGVELVLTRLHAGGKFGGSGYKTSGGLHGVGASAVN 172 Query: 125 ALSQKLELVIQREGKIHRQIYEHGV--------PQAP------LAVTGET---EKTGTMV 167 ALS++ ++ ++R GKIH + HGV P+AP L V G ++TGT + Sbjct: 173 ALSRRFDVTVRRGGKIHTMSFRHGVPGTFDGDGPEAPFRAGPGLQVIGAVKRRQRTGTSI 232 Query: 168 RFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK--EDHFHYEGGIKAF 225 R+W F + E + +LR +FL GVS LRD + E+ FHY G+ Sbjct: 233 RYWYDPRYFEVGATLDAEAVRMKLRNTAFLVPGVSYLLRDHTGAEPVEERFHYPNGLTDM 292 Query: 226 VEYLNKNKTPIHPNIFYFSTE-------KDGIG-----------VEVALQWNDGFQENIY 267 V++L I S E D G VE+A +W G++ + Sbjct: 293 VDFLAPAGDRPVSGILVVSGEGTYRENAADANGVMQANVPRRAEVELAFRWGTGYERTVE 352 Query: 268 CFTNNIPQRDGGTHLAGFRAAMTRTL-NAYMDKEGYSKKAKVSATGDDAREGLIAVVSVK 326 CFTN I GGTH GF A+TRTL +A + G K + T DD EG+ AVV V+ Sbjct: 353 CFTNTIRNAHGGTHRKGFERALTRTLADAVRNARGLLKAKEDPPTLDDILEGMTAVVHVR 412 Query: 327 VPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPT--DAKIVVGKIIDAARAREA 384 +P+P+F+SQTKD+L ++ + +++ + + L +L E T +A+ V+ KI DAAR R Sbjct: 413 IPEPQFTSQTKDELSTAGITKVLQRLVEQHLKVWLEERRTKAEARTVLQKIADAARVRLT 472 Query: 385 ARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAIL 444 ++ ++ RRK AL+ A +P KL DC+ A SE+++VEGDSA G+A+ R+ + QA+L Sbjct: 473 QKQQKDAARRKTALEGASMPAKLVDCRSTGVARSEMFIVEGDSALGTARLARSSEYQALL 532 Query: 445 PLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGS 504 P++GKILNV+KA ++L + E A ++ LG G GR ++ +RY ++IM DADVDG+ Sbjct: 533 PIRGKILNVQKANLQQVLDNAECAAIVQVLGAGSGR-TFDLSAVRYGRVLIMADADVDGA 591 Query: 505 HIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKV-KKGKQEQYI 546 HIRTLL+T F R M ++E G +Y A PPL+K+ +G+ Q + Sbjct: 592 HIRTLLITLFARYMRPLIEAGRLYAAMPPLHKITTRGRNPQTV 634 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 47/61 (77%) Query: 736 IQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEEN 795 I R+KGLGEMN ++LWETTM+P R + R+T++DA AA+Q+ LMG+ VEPRR ++ + Sbjct: 660 IPRFKGLGEMNADELWETTMNPAGRAVRRITLEDAEAAEQVLELLMGEKVEPRRNWLIAS 719 Query: 796 A 796 A Sbjct: 720 A 720 >UniRef50_Q4AAR9 Topoisomerase IV subunit B n=9 Tax=Mycoplasma RepID=Q4AAR9_MYCHJ Length = 642 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 231/563 (41%), Positives = 348/563 (61%), Gaps = 20/563 (3%) Query: 4 SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTI 63 +Y +K+LKGL+AVRKRPGMYIG TD GLH +++E+ DNAIDEA+AG EI + I Sbjct: 2 TYSVEKLKLLKGLEAVRKRPGMYIGSTDKN-GLHQLIWEIFDNAIDEAIAGFANEISLII 60 Query: 64 HADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVV 123 ++DNS+ + D+GRGIPT IH + G + E++ + LH+G KF + YK +GGLHGVG SVV Sbjct: 61 NSDNSIEISDNGRGIPTEIHKKTGKTGVELVFSELHSGAKFSTDIYKTAGGLHGVGSSVV 120 Query: 124 NALSQKLELVIQREGKI-HRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEF 182 NALS+KLE+ I R+ K+ + G + + G++ TGT +RFWP F++ +EF Sbjct: 121 NALSEKLEVYINRDKKLFYTSFINGGKIETRTKIIGKSATTGTKIRFWPDFSLFSH-SEF 179 Query: 183 EYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFY 242 + E++ RLRE FL + + I D ++ E F E GI++F+E+LN ++ IH + Sbjct: 180 DSEMIISRLRETCFLINNLKINFFDTKNNIEKKFLCERGIESFIEFLNNDQEKIHDKVIT 239 Query: 243 FSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGY 302 F + I VE Q+ + QENI F NN+ GG+H GF++ + +N Y + Sbjct: 240 FKEKMQEIIVEFGFQYVNSQQENIISFVNNVKTNLGGSHENGFKSGFLKAINTYGQQNNL 299 Query: 303 SKKAKVSATGDDAREGLIAVVSVKVPDP--KFSSQTKDKLVSSEVKSAVEQQMNELLAEY 360 K ++ DA+ GL AV+S+++P+ +F QTK+KL + K+ E+ + L + Sbjct: 300 LKTKQI-LEFSDAKVGLSAVLSLRIPESILEFVGQTKNKLSTILAKTVTEEVIFTNLMTF 358 Query: 361 LLENPTDAKIVVGKIIDAARAREA-------ARRAREMTRRKGALDLAGLPGKLADCQER 413 N A ++ I++ R+ ++ ++ +T+ K L GKL + Sbjct: 359 FALNKEVASKIINFILETYTQRQKSKLSIIESKTSKSITKEKRI-----LSGKLTPANSK 413 Query: 414 DPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITA 473 EL+LVEG+SAGGSAK RNR+ QAILPLKGKI+N +K R +L ++E+ +I+A Sbjct: 414 KAMNRELFLVEGESAGGSAKLARNREFQAILPLKGKIVNAQKTRLIDLLKNEEIIAIISA 473 Query: 474 LGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPP 533 LG GIG++ +N L Y IIIMTDAD DG+HI+ L+LTF + M ++E+G VYIAQPP Sbjct: 474 LGTGIGQN-FNLKNLNYGKIIIMTDADNDGAHIQILILTFLFLHMRPLIEKGFVYIAQPP 532 Query: 534 LYKV-KKGKQEQYIKDDEAMDQY 555 LY++ +KG+++ YI D+E ++Y Sbjct: 533 LYRISEKGRKDIYIWDEEKFEKY 555 Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 34/77 (44%), Positives = 51/77 (66%), Gaps = 1/77 (1%) Query: 720 EQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTT 779 E+ + +K S L IQRYKGLGEMN QLW+TTMDPE R + +V +++ ++ F Sbjct: 549 EEKFEKYIKNST-NLQIQRYKGLGEMNANQLWQTTMDPERRTLEKVLIENYPKVEKNFQI 607 Query: 780 LMGDAVEPRRAFIEENA 796 LMG+ + R+++IE+N Sbjct: 608 LMGERADLRKSWIEKNV 624 >UniRef50_P78016 DNA topoisomerase 4 subunit B n=3 Tax=Mycoplasma RepID=PARE_MYCPN Length = 635 Score = 442 bits (1136), Expect = e-122, Method: Compositional matrix adjust. Identities = 250/653 (38%), Positives = 389/653 (59%), Gaps = 41/653 (6%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 M N+Y ++IK+LKGLDAV+KRPGMYIG TD G HH+++E++DN +DE L+G I Sbjct: 1 MKNNYSEANIKILKGLDAVKKRPGMYIGSTD-SRGFHHLLWEILDNCVDEVLSGFANTIA 59 Query: 61 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 V +HA+N ++V D+GRGIP H + +S + + T LHAGGKFD++SYK++GGLHGVG Sbjct: 60 VVLHAENQITVSDNGRGIPFETHSDSKISTIDTVFTYLHAGGKFDNDSYKIAGGLHGVGA 119 Query: 121 SVVNALSQKLELVIQREGKIHRQIYEHG--VPQAPLAV-TGETEKTGTMVRFWPSLETFT 177 SVVNALS +L++ ++R+GK++R +YE+G + Q + + ++ GT V F P + F Sbjct: 120 SVVNALSDQLQVTVKRQGKVYRSVYENGGKIKQKAHCIGNAKIDEHGTSVTFRPDPKVFK 179 Query: 178 NVTEFEYEILAKRLRELSFLNSGVSIRLRDKR-DGKEDHFHYEGGIKAFVEYLNKNKTPI 236 + F+ E++ RL+EL+FL + + D+ G+++ F E GI +++ LN + I Sbjct: 180 KI-HFDSELIRARLKELAFLFKKLQLTFVDETGSGEKEVFFTEAGISQYLDELNADSKQI 238 Query: 237 HPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAY 296 IF TE D I +E Q+ DG E + F N+I +GG+H A FR ++ +N Y Sbjct: 239 AQKIFVSGTEDD-IELEAVFQFIDGEDEKLLSFANSIRTSEGGSHEASFRQSVGDVINNY 297 Query: 297 MDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDP--KFSSQTKDKLVSSEVKSAVEQQMN 354 K + K+ + + REGL ++ V +P+ F QTK KL S EVK+ V++ Sbjct: 298 CRKYNFLKERDKNFEASEIREGLNGIIKVNLPEKIIAFEGQTKSKLFSKEVKAVVQKLTQ 357 Query: 355 ELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAG------LPGKLA 408 + ++L N DAK++V K+ + R+ ++ R++ + +L+ L GKLA Sbjct: 358 KHFFQFLERNSVDAKLIVEKLFYNRKLRQELKQQRQIKK-----NLSNPKAERILFGKLA 412 Query: 409 DCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK-MLSSQEV 467 Q + A EL++VEGDSAGG+AK GR+R QAILPL+GK+LNVEK K ++++E+ Sbjct: 413 PAQSKKVAERELFVVEGDSAGGTAKMGRDRFLQAILPLRGKVLNVEKINNKKEAINNEEL 472 Query: 468 ATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHV 527 TLI +G GIG + D+ +Y IIIMTDAD DG+HI+ LLLTFFYR M ++E+GH+ Sbjct: 473 LTLIFCIGTGIGNNFTIRDR-KYDKIIIMTDADNDGAHIQILLLTFFYRYMKPLIEKGHI 531 Query: 528 YIAQPPLYKVK-KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSE 586 Y+A PPLYK + + K+ +Y+ ++ ++QY+ H++ + G + E Sbjct: 532 YLALPPLYKFEGRDKKARYLWTEQELEQYRAK--------HSHFNVQRYKG------LGE 577 Query: 587 YNATQ---KMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTR-WVNALVS 635 NA Q +N M R+ + L I + D+ + + W+ A ++ Sbjct: 578 MNADQLWETTMNPMTRKLIQVKLDNFIQAEKQINVFMGDKTELRKSWIEANIN 630 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 30/62 (48%), Positives = 46/62 (74%) Query: 734 LSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIE 793 ++QRYKGLGEMN +QLWETTM+P +R++++V + + I A++ MGD E R+++IE Sbjct: 567 FNVQRYKGLGEMNADQLWETTMNPMTRKLIQVKLDNFIQAEKQINVFMGDKTELRKSWIE 626 Query: 794 EN 795 N Sbjct: 627 AN 628 >UniRef50_D1BTM8 DNA topoisomerase (ATP-hydrolyzing) n=8 Tax=Actinobacteria (class) RepID=D1BTM8_XYLCX Length = 715 Score = 431 bits (1109), Expect = e-119, Method: Compositional matrix adjust. Identities = 244/611 (39%), Positives = 357/611 (58%), Gaps = 72/611 (11%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 +Y + + VL+GL+AVRKRPGMYIG TD GL H ++E++DN++DEAL G +I V Sbjct: 14 KNYTARHLSVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNSVDEALGGFATKIAVV 72 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 +HAD+SV+V DDGRGIP + P+ G+S EV+ T LHAGGKF SY SGGLHGVG SV Sbjct: 73 LHADSSVTVTDDGRGIPVDVEPKTGLSGVEVVFTKLHAGGKFGGGSYTASGGLHGVGASV 132 Query: 123 VNALSQKLELVIQREGKIHRQIYEHGVP---------------------QAPLAVTGETE 161 VNALS +L++ + R GK +R + G P ++ LAV G + Sbjct: 133 VNALSARLDVEVDRGGKTYRMTFHRGEPGTFADGPAGASPESAFSPFIERSELAVVGRAK 192 Query: 162 K--TGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKR--------DG 211 + TGT VR+W + F F Y+ L R+R+ +FL G+ I +RD+R DG Sbjct: 193 RGVTGTRVRYWADRQIFPKSAVFSYDELVTRVRQTTFLVPGLEITVRDERGLPGTPGADG 252 Query: 212 K-EDHFHYEGGIKAFVEYLNKN-----------------KTPIHPNIFYFS---TEKDGI 250 E+ F + GG FV++L + P+ + S ++D Sbjct: 253 PHEEMFVHHGGAVDFVDFLAPDAPVTATWTLRGSETFTETVPVLDERGHMSPREVQRD-C 311 Query: 251 GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSA 310 V++AL+W G+ + F N I GG+HL GF + + + + E +++ K+SA Sbjct: 312 EVDIALRWGTGYDTELRTFVNIIATPKGGSHLTGFEQGLVKVVRKQV--EANARRLKISA 369 Query: 311 TG-------DDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKS----AVEQQMNELLAE 359 DD GL AVV+V++ +P+F QTK+ L ++ V++ VE+Q+ +L Sbjct: 370 KDGGERLEKDDITAGLTAVVTVRLAEPQFEGQTKEVLGTAPVRAIVARTVEKQLGAILTS 429 Query: 360 YLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSE 419 ++ A +++ K++ RAR +AR+ +E++RRK AL+ + LP KLADC+ D SE Sbjct: 430 TKRDDKAQASLLLDKVVAEMRARVSARKQKEISRRKNALETSSLPAKLADCRSDDVERSE 489 Query: 420 LYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIG 479 L++VEGDSA G+AK R+ QA+LP++GKILNV+KA ML + E A +I LG G G Sbjct: 490 LFIVEGDSALGTAKLARSSDFQALLPIRGKILNVQKASISDMLRNAECAAIIQVLGAGSG 549 Query: 480 RDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK- 538 R ++ D RY +++MTDADVDG+HIRTLLLT FYR M +VE G V+ A PPL++++ Sbjct: 550 R-SFDLDAARYGKVVLMTDADVDGAHIRTLLLTLFYRYMRPLVEAGRVFAAVPPLHRIEV 608 Query: 539 ---KGKQEQYI 546 +GK +YI Sbjct: 609 YGARGKGNEYI 619 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 35/61 (57%), Positives = 43/61 (70%) Query: 736 IQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEEN 795 IQRYKGLGEM+ +QL ETTMDP R + RVT + A AA+++F LMG V PR+ FI Sbjct: 645 IQRYKGLGEMDADQLAETTMDPRHRTLRRVTAQHAEAAERVFELLMGSDVAPRKDFIISG 704 Query: 796 A 796 A Sbjct: 705 A 705 >UniRef50_Q98RQ4 DNA gyrase subunit B n=13 Tax=cellular organisms RepID=Q98RQ4_GUITH Length = 684 Score = 431 bits (1108), Expect = e-119, Method: Compositional matrix adjust. Identities = 238/535 (44%), Positives = 355/535 (66%), Gaps = 8/535 (1%) Query: 10 IKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSV 69 I VL+GL+ VR+RPG++IG T G HH+V+E+VDN++DE++AG C+++ V I++D SV Sbjct: 49 ITVLEGLEPVRRRPGVFIGSTGL-KGFHHLVYEIVDNSVDESMAGFCEKVDVIINSDKSV 107 Query: 70 SVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQK 129 +++D+GRGIPT +HP +A E ++T+LHAGGKF YKVSGGLHGVGVSVVN LS+ Sbjct: 108 TIRDNGRGIPTDLHPITNKTALETVLTILHAGGKFGGGGYKVSGGLHGVGVSVVNGLSEY 167 Query: 130 LELVIQR-EGKI-HRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEIL 187 L + QR + KI R + + + ++ + GT + F P + F + +F+ ++ Sbjct: 168 LNINTQRNQRKIGMRFVRGKKISECNISSFKKNIINGTTINFKPDYQIFFSEFDFDSYVI 227 Query: 188 AKRLRELSFLNSGVSIRLRDKRDG--KEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFST 245 RL EL+FLNS + + L D+R K F ++GGI ++ + NK +H N S Sbjct: 228 GGRLNELAFLNSNLKLLLEDRRSKIIKSSLFLHDGGIMEYINEMTINKKRLH-NPIILSK 286 Query: 246 EKDGIGVEVALQWN-DGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSK 304 + +E+ W+ + +QENI F NNI +GGTH+ GF+ +T+ +N K+ SK Sbjct: 287 IFNNSQIEIGFVWSSEQYQENILSFVNNIRTVEGGTHVDGFKQGITKLVNLLSKKKIKSK 346 Query: 305 KAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLEN 364 + S +G+ REGL +++VK +P+F Q K KL + ++K VE + E + +EN Sbjct: 347 EKLNSISGEFIREGLTCLINVKTSEPEFEGQIKSKLGNPDIKFLVENLIKEEGEIHFIEN 406 Query: 365 PTDA-KIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLV 423 ++ IV+ K I A A EA+++A+E+ R+K L+ LPGKL+DC E++P SE+++V Sbjct: 407 NSNLLNIVLEKAISAMNAYEASKKAKELVRKKSILEGITLPGKLSDCSEKNPQFSEIFIV 466 Query: 424 EGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEY 483 EGDSAGGSAKQ R+R+ QAILPL+GKI+N+EK K+ ++ E+ +LI+ALG G+ ++ Sbjct: 467 EGDSAGGSAKQARDRRFQAILPLRGKIINIEKNDEKKIYNNTEIQSLISALGLGVRGNDE 526 Query: 484 NPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 + LRYH IIIMTDADVDG+HIRTLLLTFFYR E++++G VYIA PPLYK++ Sbjct: 527 DLSNLRYHKIIIMTDADVDGAHIRTLLLTFFYRYQKELIDKGFVYIACPPLYKIE 581 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 39/87 (44%), Positives = 58/87 (66%), Gaps = 2/87 (2%) Query: 720 EQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTT 779 E L+++++ S +IQR+KGLGEM PEQLW+TTM PE R + ++ + DA AD++F Sbjct: 598 EGELEYIIQSSHFNKNIQRFKGLGEMMPEQLWKTTMSPEMRILKKIKLSDAKRADKIFEV 657 Query: 780 LMGDAVEPRRAFIEENA--LKAANIDI 804 LMG V R+ FI+ A +K ++DI Sbjct: 658 LMGSKVPERKKFIQIQASLIKIDSLDI 684 >UniRef50_A7I8U0 DNA gyrase subunit B n=1 Tax=Candidatus Methanoregula boonei 6A8 RepID=A7I8U0_METB6 Length = 708 Score = 427 bits (1098), Expect = e-118, Method: Compositional matrix adjust. Identities = 214/421 (50%), Positives = 299/421 (71%), Gaps = 7/421 (1%) Query: 151 QAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRD 210 +A L T + TGT + F P F T F+Y++LA RLREL+FLN+G++I + D+R Sbjct: 224 RASLLATLGNKLTGTRIHFVPDASIFETTT-FDYDVLAHRLRELAFLNAGLTIIITDERT 282 Query: 211 GKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDG---IGVEVALQWNDGFQENIY 267 G + Y GG+ FV+YLN+ +HPN Y T+KD + +EVA+Q+ G+ E +Y Sbjct: 283 GDSATYCYAGGLSEFVKYLNEGNEVLHPNPIYI-TKKDAENKLDLEVAMQYTTGYDEKLY 341 Query: 268 CFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK-AKVSATGDDAREGLIAVVSVK 326 + N++ R+GGTHL GFR+A+TR +N + G K+ A+V+ G+D REGL +VVSVK Sbjct: 342 TYVNSVNTREGGTHLEGFRSAITRGINVVAKRNGIIKENAQVTLRGEDVREGLTSVVSVK 401 Query: 327 VPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAAR 386 + +P+F QTK +L +S VK V+ + L EY ENP KI+V K + AA+AREAAR Sbjct: 402 MANPQFEGQTKMRLGNSSVKGIVDSLVYAALTEYFDENPGVLKIIVEKALSAAKAREAAR 461 Query: 387 RAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPL 446 AR++ RRK +L+ AGLPGKL+DC ERDPA SE+Y+VEGDSAGGSAKQGR+RK QAILPL Sbjct: 462 NARDLARRKSSLESAGLPGKLSDCSERDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPL 521 Query: 447 KGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHI 506 +GKILNVEKA ++L + E+ TLI A+G GIG ++++P++ RYH I+IMTDADVDG+HI Sbjct: 522 RGKILNVEKAGEHQILKNAEIQTLINAIGTGIG-EKFDPERARYHRIVIMTDADVDGAHI 580 Query: 507 RTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATL 566 RTLLLTFFYR M +++E G+VYIAQPPL+++ KGK+E+Y+ + M + ++ G ++ Sbjct: 581 RTLLLTFFYRYMRKLIELGYVYIAQPPLFRIAKGKEEKYVYKEAEMQKVSAAMGDKGVSI 640 Query: 567 H 567 Sbjct: 641 Q 641 Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 90/160 (56%), Positives = 112/160 (70%), Gaps = 1/160 (0%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 M+++YD+S I VL+GL VR+RP MYIG TD GLHH+V+EVVDN+IDEALAG C I Sbjct: 1 MTDTYDASHITVLEGLQPVRERPAMYIGSTDT-RGLHHLVYEVVDNSIDEALAGFCNRIC 59 Query: 61 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 V I+ D S+ V+D+GRGIP + SA EV++TVLHAGGKFD +Y+VSGGLHGVGV Sbjct: 60 VVINKDGSLMVEDNGRGIPVDTMEKNHKSALEVVLTVLHAGGKFDKETYQVSGGLHGVGV 119 Query: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGET 160 SVVNALS L + R+G I+ + G PL ET Sbjct: 120 SVVNALSNWLSARVYRDGNIYEMRFSQGKTTLPLTTREET 159 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 43/73 (58%), Positives = 58/73 (79%) Query: 732 RGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAF 791 +G+SIQRYKGLGEMN +QLW+TTMDPE+R L+V+++DA AD++F TLMG VE R+ F Sbjct: 636 KGVSIQRYKGLGEMNAQQLWDTTMDPENRIFLKVSIEDAYEADEMFKTLMGKDVEIRKNF 695 Query: 792 IEENALKAANIDI 804 I +A + N+DI Sbjct: 696 IMRHAKEVTNLDI 708 >UniRef50_D2NTW6 Type IIA topoisomerase, B subunit n=10 Tax=Actinomycetales RepID=D2NTW6_9MICC Length = 724 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 239/607 (39%), Positives = 346/607 (57%), Gaps = 67/607 (11%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 S++Y + + VL+GL+AVRKRPGMYIG TD GL H ++E++DN++DEALAG + I V Sbjct: 27 SSNYTARHLSVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNSVDEALAGFGQSIQV 85 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 ++ D SV V+DDGRGIPT I P G+S EV+ T LHAGGKF SY SGGLHGVG S Sbjct: 86 ILYRDGSVEVRDDGRGIPTDIEPRTGLSGVEVVFTKLHAGGKFGGGSYNASGGLHGVGAS 145 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVP------QAP---------------LAVTGET 160 VVNALS +L++ + R K ++ + HG+P + P L + G Sbjct: 146 VVNALSSRLDVQVDRGSKTYQMSFRHGIPGFFESGRTPKPEDPFTPATEGTDALQIVGRA 205 Query: 161 EK--TGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKR--------- 209 ++ TGT VR+W + FT +F YE LA R+R+ +FL G+ I +RD+R Sbjct: 206 KRGVTGTRVRYWADPQIFTPDAKFSYEDLAARVRQTAFLIPGLRICIRDERRLPGTPGEL 265 Query: 210 DGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFS--------------------TEKDG 249 + E+ F Y+GGI FVE+L ++ F S E+D Sbjct: 266 EPHEEVFQYDGGISEFVEFLAHDERITDTWRFSGSGSFTETVPVLGEDGRSQLTDVERD- 324 Query: 250 IGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVS 309 V+VAL+W G++ + F N I GGTH GF + R + ++ ++K KV Sbjct: 325 CEVDVALRWGIGYETTVRSFVNIIATPKGGTHTTGFEQGLLRVMRKHLADN--ARKYKVG 382 Query: 310 ---ATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYL----L 362 DD GL AV++V++ +P+F QTK+ L + V+ V + + + L L Sbjct: 383 NDKIEKDDVLAGLTAVLTVRLAEPQFEGQTKEILGTPAVRQIVSKVVGDALKARLESTAR 442 Query: 363 ENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYL 422 A + K++ + R +AR +E RRK AL+ + +P KL DC+ + SEL++ Sbjct: 443 AEKAQAAALCEKVVSEMKTRVSARIHKETQRRKTALESSSMPTKLVDCRSTNVEHSELFI 502 Query: 423 VEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDE 482 VEGDSA G+A+ R+ QA+LP++GKILN ++A +L++ E A LI +G G GR Sbjct: 503 VEGDSALGTARLARSSSYQALLPIRGKILNTQRASVTDVLANAECAALIQVIGAGSGR-T 561 Query: 483 YNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYK---VKK 539 ++ D RY +I+MTDADVDG+HIRTLLLT FYR M ++E G VY A PPL++ V++ Sbjct: 562 FDLDSARYGKVIMMTDADVDGAHIRTLLLTLFYRYMRPLIEAGRVYAAVPPLHRVEVVRR 621 Query: 540 GKQEQYI 546 GK + + Sbjct: 622 GKPNEMV 628 Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 37/71 (52%), Positives = 49/71 (69%), Gaps = 2/71 (2%) Query: 736 IQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEEN 795 IQRYKGLGEM+ +QL ETTMDP R + R+ ++DA AA++ F+ LMG V PR+ FI Sbjct: 654 IQRYKGLGEMDADQLAETTMDPRHRMLRRIRIEDAEAAERAFSLLMGSEVAPRKEFIIAG 713 Query: 796 A--LKAANIDI 804 A L +ID+ Sbjct: 714 AHQLDTESIDM 724 >UniRef50_D1C5K6 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C5K6_SPHTD Length = 674 Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust. Identities = 236/568 (41%), Positives = 355/568 (62%), Gaps = 23/568 (4%) Query: 5 YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIH 64 Y + I+VL+G++A+R RPGMYIG T TGLHH+++E +DNA DEA+AG+ K I V I Sbjct: 34 YSGADIRVLEGIEAIRTRPGMYIGSTGT-TGLHHLIWEALDNATDEAIAGYGKNIWVEID 92 Query: 65 ADNSVSVQDDGRGIPTGIHPEE----GVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 D V+V+D+ RGIP P+E + A VIMTV H+GGKF+ +YK +GGLHGVG Sbjct: 93 RDGWVTVRDEARGIP--FDPKEINGKTLPTATVIMTVPHSGGKFEQGAYKTAGGLHGVGA 150 Query: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTN-V 179 +V+NALS++LEL I R+G+ Q + GVP + ++TGT +R+ E F + Sbjct: 151 TVINALSERLELTIWRDGQQFFQTFTRGVPGKHTITPCDPKRTGTQLRWLFDREIFADPA 210 Query: 180 TEFEYEILAKRLRELSFLNSGVSIRLR----DKRDGKEDHFHYEGGIKAFVEYL---NKN 232 ++ +++ RLR ++LN G++ LR D + E FH E G+ +VE L +K Sbjct: 211 VGYQRDVVESRLRAAAYLNRGIAYHLRIWDDDAGEMVEQTFHSERGLVDYVEELRPRDKE 270 Query: 233 KTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRT 292 P+ + + +D + +EVA+Q N G + + F N + +GGTH +GF+AA+T+ Sbjct: 271 SQPLFKEVVAIAETRDDVVIEVAVQPNRGERTRVVSFANGVRTIEGGTHESGFQAALTKV 330 Query: 293 LNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQ 352 LN + G +KK + A D REGL+A+VSVK+ +P+F QTK++L +S V V Sbjct: 331 LNDQAIRLGVTKKREFDA--DLIREGLVAIVSVKLTNPQFEGQTKNRLTNSGVDGIVRSV 388 Query: 353 MNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREM-----TRRKGALDLAGLPGKL 407 + + L ++ N + A+ V + +AR+AA+ A + +RR GAL A + K Sbjct: 389 VGDALTRWMEANESAAREWVRTLEQRRKARDAAKAAARLVMTGKSRRNGALLDAAISDKF 448 Query: 408 ADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEV 467 C +DP +ELYLVEGDSAGGSA QGR QAIL L GK LNV +A +++ ++E+ Sbjct: 449 IPCNTKDPERAELYLVEGDSAGGSASQGRFSDFQAILKLSGKPLNVARANIERVAKNEEI 508 Query: 468 ATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHV 527 TL+ +G G R ++ +LR+H IIIMTDADVDG HI+ LLLT F +++P+++ERGH+ Sbjct: 509 RTLLQVIGTG-SRQAFDISRLRFHKIIIMTDADVDGMHIQALLLTLFLQELPQLIERGHI 567 Query: 528 YIAQPPLYKVKKGKQEQYIKDDEAMDQY 555 Y+A PPLY V++ + +++DDEA+ ++ Sbjct: 568 YLAAPPLYSVRQNGKVTWLRDDEALREW 595 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 40/83 (48%), Positives = 56/83 (67%), Gaps = 4/83 (4%) Query: 724 DWLVKESRRG-LSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMG 782 +W+ + R+G ++RYKGLGEMNP +L ETTMDPE RR+ RVT++DA A+++ LM Sbjct: 594 EWM--KGRKGPFELKRYKGLGEMNPRELRETTMDPERRRLRRVTLEDAALAERMVYELME 651 Query: 783 DA-VEPRRAFIEENALKAANIDI 804 D E RR F+ + A K ID+ Sbjct: 652 DTNAEGRRTFLAQRARKYQEIDV 674 >UniRef50_Q83G36 DNA gyrase subunit B-like protein n=2 Tax=Tropheryma whipplei RepID=Q83G36_TROWT Length = 662 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 235/580 (40%), Positives = 341/580 (58%), Gaps = 40/580 (6%) Query: 5 YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIH 64 Y++ I +L+GL AVRKRPGMYIG TD+ GL H ++E++DN++DE LAG + +T+H Sbjct: 7 YNADDIALLEGLAAVRKRPGMYIGSTDN-HGLAHCLWEIIDNSVDEVLAGFGNVVNITLH 65 Query: 65 ADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN 124 DNS SVQD GRGIP I + G++ E++ T LHAGGKF +Y SGGLHGVG SVVN Sbjct: 66 GDNSFSVQDFGRGIPVDIESKTGLTGVELVFTKLHAGGKFGTGAYFTSGGLHGVGASVVN 125 Query: 125 ALSQKLELVIQREG-----KIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNV 179 ALS+KL + + R+G + Q+ + +A + TGT VRFWP F + Sbjct: 126 ALSEKLSVEVDRDGMTWVMEFRNQVTSGLRSKCKIA----SNVTGTRVRFWPDPLIFGS- 180 Query: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNK------ 233 E E L +R + +FL G+ + + D+ GK + +EGG K FVE+L+ + Sbjct: 181 AEICIESLHQRAMQTAFLVPGLRVNIEDRVLGKSSSYLFEGGCKQFVEHLSAGELITDVL 240 Query: 234 -----------TPIHP---NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGG 279 P+ N+ S E+ V++AL W + F+ +I F N I GG Sbjct: 241 CIRGKGSFSEAVPVLKETGNLVISSVERV-CDVDIALAWRNDFETHINSFVNVIETPKGG 299 Query: 280 THLAGFRAAMTRTL-NAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKD 338 TH +GF A+ +T+ NA + Y K +D GL AVVSVK+P+P+F QTK+ Sbjct: 300 THYSGFEQALLKTIRNAVSSQSRYLKSGNNRPEREDVFSGLTAVVSVKLPEPQFEGQTKE 359 Query: 339 KLVSSEVKSAVEQQMNELLAEYLLENP---TDAKIVVGKIIDAARAREAARRAREMTRRK 395 L + VK V + + L + L E+P T + V+ K++ R AAR +RE RRK Sbjct: 360 VLGTPAVKGIVANIVADNL-QKLFEDPKYKTQIRRVLEKVVAQMHFRLAARASRETQRRK 418 Query: 396 GALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 455 AL+ + LP KL DC+ D SEL++VEGDSA G+A++ RN + QA+LP++GKILNV+K Sbjct: 419 NALETSSLPAKLVDCRSNDVNESELFIVEGDSALGTARRARNSEYQALLPIRGKILNVQK 478 Query: 456 ARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFY 515 A L++ E A++I +G G G + ++ + RY +IIM+DADVDG+HIR LLLT F+ Sbjct: 479 ASVADALANAECASIIQVIGAGSGSN-FDIAQARYGKVIIMSDADVDGAHIRILLLTLFF 537 Query: 516 RQMPEIVERGHVYIAQPPLYK--VKKGKQEQYIKDDEAMD 553 R M ++ G V+ A PPL++ VK ++ Y + D ++ Sbjct: 538 RYMQPMISSGRVFSALPPLHQVVVKNSNEKIYTRSDRELE 577 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 35/68 (51%), Positives = 44/68 (64%) Query: 736 IQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEEN 795 IQRYKGLGEM+ +QL ETTMD R +LR+ + DA A +F LMG+ V PRR FI + Sbjct: 594 IQRYKGLGEMDADQLAETTMDRSKRTLLRIRMSDAQQASDIFALLMGNDVAPRREFIANS 653 Query: 796 ALKAANID 803 + ID Sbjct: 654 VVSTDRID 661 >UniRef50_P77966 Ssp gyrB intein n=45 Tax=cellular organisms RepID=GYRB_SYNY3 Length = 1078 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 230/434 (52%), Positives = 297/434 (68%), Gaps = 5/434 (1%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 + +Y + I+VL+GL+ VRKRPGMYIG T GLHH+V+EVVDNAIDEALAG+C I + Sbjct: 5 TTNYGADQIQVLEGLEPVRKRPGMYIGSTGP-KGLHHLVYEVVDNAIDEALAGYCTHIEI 63 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 I+AD SV+V D+GRGIPT IHP G SA E ++TVLHAGGKF YKVSGGLHGVGVS Sbjct: 64 DINADGSVTVVDNGRGIPTDIHPTTGRSALETVLTVLHAGGKFGGGGYKVSGGLHGVGVS 123 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVT-GETEKTGTMVRFWPSLETFTNVT 180 VVNALS+ +E+ + R+GK H Q +E G P L T E TGT V F P + F + Sbjct: 124 VVNALSEWVEVKVWRQGKEHFQRFERGNPIGTLEATPNEGHSTGTQVSFLPDTQIFKDGI 183 Query: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDG--KEDHFHYEGGIKAFVEYLNKNKTPIHP 238 EF+Y LA RL+EL++LN+GV I D+R KE+ F+YEGGI+ +V Y+ +KTP+H Sbjct: 184 EFDYHTLASRLKELAYLNAGVRITFGDRRADSLKEEQFYYEGGIREYVTYMTTDKTPLHE 243 Query: 239 NIFYFSTEKDGIGVEVALQWN-DGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYM 297 I Y S EK+ + VEVALQW D + + + F NNI DGGTHL G +A +TRTLN+ Sbjct: 244 EIIYTSGEKNDVQVEVALQWCVDAYSDTLLGFANNIRTIDGGTHLEGLKAVLTRTLNSVA 303 Query: 298 DKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELL 357 K K + G++ REGL V+SVKVPDP+F QTK KL ++EV+ V+ + E L Sbjct: 304 RKRNKLKDGDSNLGGENIREGLTGVISVKVPDPEFEGQTKTKLGNTEVRGIVDTLVGEAL 363 Query: 358 AEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPAL 417 E+L NP A ++ K + A +A EAARRARE+ RRK L+ + LPGKLADC +DP+ Sbjct: 364 TEFLEFNPGVADAIIEKAVQAFKAAEAARRARELVRRKSVLESSTLPGKLADCSSKDPSE 423 Query: 418 SELYLVEGDSAGGS 431 SE+++VEGDSAGG Sbjct: 424 SEIFIVEGDSAGGC 437 Score = 155 bits (393), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 77/144 (53%), Positives = 100/144 (69%), Gaps = 1/144 (0%) Query: 415 PALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAL 474 P L G SAKQGR+R+ QAILPL+GKILN+EK K+ + E+ LITAL Sbjct: 856 PHTHNFALASGVFVHNSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITAL 915 Query: 475 GCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPL 534 G GI D+++ LRYH ++IMTDADVDG+HIRTLLLTFFYR ++V++G++YIA PPL Sbjct: 916 GLGIKGDDFDISSLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQRDLVDQGYIYIACPPL 975 Query: 535 YKVKKGKQEQYIKDDEAMDQYQIS 558 YK+++GK Y D + Q QIS Sbjct: 976 YKLERGKNHFYCYSDREL-QEQIS 998 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 42/70 (60%), Positives = 52/70 (74%) Query: 735 SIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEE 794 +IQR+KGLGEM P+QLW+TTM+PESR M RV ++DA AD++FT LMGD V PRR FIE Sbjct: 1007 TIQRFKGLGEMMPQQLWDTTMNPESRTMKRVHIEDAAEADRIFTVLMGDRVAPRREFIET 1066 Query: 795 NALKAANIDI 804 K D+ Sbjct: 1067 YGTKLDLTDL 1076 >UniRef50_D0RNK2 DNA topoisomerase IV, B subunit n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RNK2_9RICK Length = 646 Score = 398 bits (1022), Expect = e-109, Method: Compositional matrix adjust. Identities = 224/562 (39%), Positives = 333/562 (59%), Gaps = 20/562 (3%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 +S +Y + I+VL+GL VRKRPGMYIG TD+ T HH+ E++DN+IDEA+AG+ KEI+ Sbjct: 3 ISKTYSAKDIEVLEGLAPVRKRPGMYIGGTDE-TAYHHLANEILDNSIDEAVAGYAKEIV 61 Query: 61 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 + + N++ + DDGRGIP HP++ +A EV+MT LH+GGKF+D+ YK S GLHGVG+ Sbjct: 62 IKLVNKNTIIISDDGRGIPIDKHPKKKKTALEVVMTTLHSGGKFNDSVYKSSAGLHGVGL 121 Query: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNV 179 SVVNALS KL + + + KI+ Q Y G L G+ + K GT + F P E F Sbjct: 122 SVVNALSSKLNIQVTKSSKIYSQDYSKGKILNKLKTKGKNKIKNGTQITFSPDPEIFGKD 181 Query: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRD--------GKEDHFHYEGGIKAFVEY-LN 230 F+ E + + + ++L G+ I +D ++ + G++ F++ +N Sbjct: 182 VNFKPEKIYELAKNKAYLQKGIKISWECNKDLLNRKSSVPSKETLLFSKGLEDFLKNEIN 241 Query: 231 KNKTPIHPNIFYFS---TEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRA 287 +N +H + + S +K G +E ALQ+N + F N + +GGTH AGFR+ Sbjct: 242 QNNV-LHEKVSFQSGNLEDKKG-KIEFALQFNKEKIKYNKAFCNTVYNMNGGTHDAGFRS 299 Query: 288 AMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKS 347 + +++ Y + + K AT DD + ++SV + +P+F QTK KL S+ V+ Sbjct: 300 GIAKSIRKYAKNK--NNKIVSKATQDDIFDQAAYIISVYISNPEFEGQTKHKLSSNFVQK 357 Query: 348 AVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKL 407 + + E+L N AK ++ + + R + + R+ A LPGKL Sbjct: 358 YCDSFASSAFDEWLNRNSKAAKNILNVLEEKIREKN-IYDLNQNVERQSAFRKIRLPGKL 416 Query: 408 ADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEV 467 +DC +EL++VEGDSAGGSAKQ R+R QAILPL+GKILNV+ + K+L++ E+ Sbjct: 417 SDCTSDKTEGTELFIVEGDSAGGSAKQARDRTTQAILPLRGKILNVKSSNAAKILANSEI 476 Query: 468 ATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHV 527 L+ ALGCG G++ Y+ LRY IIIMTDADVDG HI TLLLTFF +MP+++ GH+ Sbjct: 477 NNLLQALGCGRGKN-YSKKDLRYEKIIIMTDADVDGDHISTLLLTFFISEMPQLILDGHL 535 Query: 528 YIAQPPLYKVKKGKQEQYIKDD 549 Y+A PPLYK+ + Y D+ Sbjct: 536 YLAVPPLYKLNISGKSTYAIDE 557 Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 32/75 (42%), Positives = 47/75 (62%), Gaps = 4/75 (5%) Query: 734 LSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTV----KDAIAADQLFTTLMGDAVEPRR 789 + I R+KGLGEM P QL ETTM+ E+R++++V + ++L + LMG E R Sbjct: 572 IEISRFKGLGEMMPAQLKETTMNIETRKLIKVVLPVQKPKMKKTNKLVSDLMGKNAELRL 631 Query: 790 AFIEENALKAANIDI 804 FI ENA K+ ++DI Sbjct: 632 KFISENANKSLSLDI 646 >UniRef50_Q10XN8 DNA gyrase subunit B n=6 Tax=Bacteria RepID=Q10XN8_TRIEI Length = 891 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 227/439 (51%), Positives = 292/439 (66%), Gaps = 10/439 (2%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 SN+Y + I+VL+GL+AVRKRPGMYIG T GLHH+V+EVVDN+IDEALAG+C I V Sbjct: 3 SNNYGAEQIQVLEGLEAVRKRPGMYIGTTGP-RGLHHLVYEVVDNSIDEALAGYCTHIEV 61 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 ++ D SV V DDGRGIP H + G SA E +MTVLHAGGKF YKVSGGLHGVGVS Sbjct: 62 DLNKDGSVKVTDDGRGIPVDTHSKTGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVGVS 121 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNVT 180 VVNALS+ +E+ + R+ K H Q YE G P L EK TGT V+F P E FT Sbjct: 122 VVNALSEWVEVTVWRDKKTHIQGYERGQPTGDLKSKPNKEKRTGTSVQFLPDQEIFTTGI 181 Query: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKR-------DGKEDHFHYEGGIKAFVEYLNKNK 233 +F+Y + RLREL++LN+GV I + D R + K + + YEGGIK +V Y+N+ K Sbjct: 182 QFDYNTIIGRLRELAYLNAGVKITITDNRLELVKSDEPKVESYCYEGGIKEYVTYMNREK 241 Query: 234 TPIHPNIFYFSTEKDGIGVEVALQWN-DGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRT 292 +H + + EK+ + VEVALQW D F +N+ F NNI DGGTHL G + +TRT Sbjct: 242 QSLHEEVIFVRGEKNDVQVEVALQWCIDAFSDNVLGFANNIRTIDGGTHLEGLKTVLTRT 301 Query: 293 LNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQ 352 +N K K + + G++ REGL AV+SVKVP+P+F QTK KL ++EV+ V+ Sbjct: 302 MNGIARKRNKLKDSDPNLGGENVREGLTAVISVKVPEPEFEGQTKTKLGNTEVRGIVDSL 361 Query: 353 MNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQE 412 + E+L+EYL NP A V+ K I A +A EAARRAR++ RRK L+ + LPGKLADC Sbjct: 362 VGEVLSEYLDFNPQVADAVLDKAIQAFKAAEAARRARDLVRRKSVLESSPLPGKLADCST 421 Query: 413 RDPALSELYLVEGDSAGGS 431 ++P SE+YLVEGDSA G Sbjct: 422 KNPEESEIYLVEGDSASGC 440 Score = 158 bits (400), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 74/140 (52%), Positives = 99/140 (70%) Query: 415 PALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAL 474 P L G SAKQGR+R+ QAILPL+GKI+N+EK K+ + E+ ++ITAL Sbjct: 668 PNTHNFALASGVFVHNSAKQGRDRRFQAILPLRGKIINIEKTDDAKIYKNNEIQSMITAL 727 Query: 475 GCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPL 534 G GI DE++ +LRYH +IIMTDADVDGSHIRTLLLTFFYR +V++G++YIA PPL Sbjct: 728 GLGIKGDEFDASQLRYHKVIIMTDADVDGSHIRTLLLTFFYRYQRALVDQGYIYIACPPL 787 Query: 535 YKVKKGKQEQYIKDDEAMDQ 554 YKV++G+ Y D +++ Sbjct: 788 YKVERGRNHYYCYSDRELNE 807 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 48/103 (46%), Positives = 66/103 (64%), Gaps = 6/103 (5%) Query: 707 IERGERRQPVASFEQALDWLVKE---SRRGLSIQRYKGLGEMNPEQLWETTMDPESRRML 763 +ERG R ++ L+ L++ +IQR+KGLGEM P QLW+TTM+PE+R + Sbjct: 790 VERG-RNHYYCYSDRELNELIQNEFPDNANYTIQRFKGLGEMMPVQLWDTTMNPETRTLK 848 Query: 764 RVTVKDAIAADQLFTTLMGDAVEPRRAFIEENA--LKAANIDI 804 RV ++DA AD++FT LMGD V PRR FIE LK ++DI Sbjct: 849 RVEIEDAAEADRIFTVLMGDRVAPRREFIETYGPKLKITDLDI 891 >UniRef50_C0W359 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W359_9ACTO Length = 746 Score = 381 bits (978), Expect = e-104, Method: Compositional matrix adjust. Identities = 241/642 (37%), Positives = 353/642 (54%), Gaps = 107/642 (16%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 S+SY + + VL+GL+AVRKRPGMYIG TD GL H V+E++DN++DEAL G+ I V Sbjct: 5 SSSYSARHLSVLEGLEAVRKRPGMYIGSTDQ-RGLMHCVWEIIDNSVDEALEGYGDSIAV 63 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 T+H D S+ V+D+GRG+P + P G++ E++ T LHAGGKF SY +GGLHGVG S Sbjct: 64 TVHEDGSIEVRDNGRGVPVDVEPGSGLTGVELVYTKLHAGGKFGGGSYGAAGGLHGVGAS 123 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVP----------------------QAPLAVTGE 159 VVNALS+++++ + R GK + + GVP + L V G+ Sbjct: 124 VVNALSERMDVAVDRGGKTYAMSFHRGVPGVFDDPDPAHPRPDTPFTEYTEASELRVIGK 183 Query: 160 TEK--TGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDK--------- 208 ++ +GT VR+W + F +E++ L RLR+ SFL G+S+ L D+ Sbjct: 184 VKRGVSGTRVRYWADPQIFPRPSEYDAAALRARLRQTSFLVPGLSLTLTDERSAEEAARA 243 Query: 209 ---------------------RDGKEDH----------------FHYEGGIKAFVEYLNK 231 ++ E+ F +GG + FV++L Sbjct: 244 EKAAPSGSGAAGDDPALRASAKNATEEASDLFASQTQAPEGSEVFLAKGGTRDFVDFLAT 303 Query: 232 NKTPIHPNIFYFSTE------------KDG----------IGVEVALQWNDGFQENIYCF 269 + + + F + E K G V+VAL+W G+ F Sbjct: 304 DASVT--DTFRLTGEGTYTETVQQLDKKSGHLRPVEVERTCSVDVALRWGIGYDTIERSF 361 Query: 270 TNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATG-----DDAREGLIAVVS 324 N I GGTHL GF A+T+ L +D ++ KV+A DD G+ AVV+ Sbjct: 362 VNIIATPMGGTHLTGFEQAVTKVLRKQIDSN--ARALKVTARDGKIEKDDILAGMTAVVT 419 Query: 325 VKVPDPKFSSQTKDKLVSSEVKS----AVEQQMNELLAEYLLENPTDAKIVVGKIIDAAR 380 V+VP+P+F QTK+ L ++ V+ VE+++ LL + T ++ + K++ R Sbjct: 420 VRVPEPQFEGQTKEVLGTAPVRQIVAKVVEKELTALLTSSKRDLKTQSRALQEKVVGEMR 479 Query: 381 AREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKN 440 AR +AR +E+TRRK AL+ + LP KLADC+ D A SEL++VEGDSA G+AK RN + Sbjct: 480 ARISARMHKEITRRKTALETSTLPAKLADCRSDDVAASELFIVEGDSALGTAKNARNSEF 539 Query: 441 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDAD 500 QA+LP++GKILNV+KA ML + E + +I +G G GR ++ D RY +I+MTDAD Sbjct: 540 QALLPIRGKILNVQKASQADMLRNAECSAIIQVVGAGSGR-TFDLDSARYGKVILMTDAD 598 Query: 501 VDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQ 542 VDG+HIRTLLLT F+R M ++E G VY A PPL++++ Q Sbjct: 599 VDGAHIRTLLLTLFFRYMRPMIEAGRVYAAVPPLHRIEVSAQ 640 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/79 (49%), Positives = 50/79 (63%), Gaps = 3/79 (3%) Query: 721 QALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDA---IAADQLF 777 + L L K+ R QRYKGLGEM+ QL ETTM+PE R + R+T+ D + A+ +F Sbjct: 658 RTLRKLEKQGRSFKEPQRYKGLGEMDAHQLAETTMEPEHRTLRRITLGDEAELLEAENVF 717 Query: 778 TTLMGDAVEPRRAFIEENA 796 LMG +VEPRR FI E A Sbjct: 718 ELLMGSSVEPRRDFIVEGA 736 >UniRef50_D0WQJ3 Putative DNA gyrase subunit B n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WQJ3_9ACTO Length = 735 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 239/627 (38%), Positives = 359/627 (57%), Gaps = 87/627 (13%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 + SY + ++VL+GL+AVRKRPGMYIG TD GL H ++E++DNA+DEAL GH + V Sbjct: 15 NESYTARHLQVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNAVDEALEGHADAVEV 73 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 ++AD SV V+D+GRG+P P G+S EV+ T LHAGGKF SY SGGLHGVG S Sbjct: 74 RLYADGSVEVRDNGRGVPVDEVPGVGLSGVEVVYTKLHAGGKFGGGSYGSSGGLHGVGAS 133 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVP------------QAPLAVTGETE-------- 161 VVNALS+++++ + R GK ++ + G P +AP + E+ Sbjct: 134 VVNALSERMDVQVDRGGKTYQMQFHRGEPGRFSDGASGPDPRAPFSAFTESSVLDVVGKV 193 Query: 162 ---KTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDG------- 211 K+GT VR+W E F F YE L +R R+ +FL G++I L D+R+G Sbjct: 194 AKNKSGTRVRYWADPEIFLASAAFSYEELVERARQTAFLVPGLTISLVDEREGAAGENAA 253 Query: 212 ------------------KEDHFHYEGGIKAFVEYLNKN-----------------KTPI 236 + + F ++GG FV++L + K P+ Sbjct: 254 GENAEGEGDEGQAPHEGPRTETFRFDGGTVDFVDFLAPDAAVTATMRLTGEGTFAEKVPV 313 Query: 237 ----HPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRT 292 ++ E+ + V+VAL+W ++ + F N I GGTH +GF + + Sbjct: 314 LDAESGHLVSREVER-AVAVDVALRWGKDYETRVESFVNIIRTPGGGTHQSGFEQGLMKV 372 Query: 293 LNAYMDKEGYSKKAKVSATG-----DDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKS 347 + + + E S++ K+SA DD GL AVV+V++P+P+F QTK+ L +S V+ Sbjct: 373 VRSLV--ESNSRRLKMSAKDPRIEKDDVLAGLTAVVTVRLPEPQFEGQTKEILGTSAVRG 430 Query: 348 ----AVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGL 403 VE+++ +L + T+ ++ K++ RAR AR +E++RRK AL+ + L Sbjct: 431 IVSGVVERELGAILGSSKRDQKTETSRLLEKVVAEMRARVTARMHKEISRRKNALEASSL 490 Query: 404 PGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLS 463 P KLADC+ D A +EL++VEGDSA G+AK R+ + QA+LP++GKILNV+KA +L Sbjct: 491 PAKLADCRSEDVAETELFIVEGDSALGTAKLARSSEFQALLPIRGKILNVQKASTADILK 550 Query: 464 SQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVE 523 ++EV+ +I +G G GR ++ RY +I+MTDADVDG+HIRTLLLT F+R M +V+ Sbjct: 551 NKEVSEIIQVVGAGSGRT-FDLPAARYGKVIMMTDADVDGAHIRTLLLTLFFRYMRPLVQ 609 Query: 524 RGHVYIAQPPLYKVK----KGKQEQYI 546 G VY A PPL++++ KG ++ YI Sbjct: 610 EGRVYAAVPPLHRIEVSGGKGGKKSYI 636 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 35/64 (54%), Positives = 43/64 (67%), Gaps = 3/64 (4%) Query: 736 IQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIA---ADQLFTTLMGDAVEPRRAFI 792 IQRYKGLGEM+ QL ETTMDP R + R+ ++D A A+ +F LMG+ V PRR FI Sbjct: 662 IQRYKGLGEMDAHQLAETTMDPSRRTLRRIRMEDERALMEAETVFELLMGNDVAPRREFI 721 Query: 793 EENA 796 E A Sbjct: 722 VEGA 725 >UniRef50_A0LUT9 DNA topoisomerase (ATP-hydrolyzing) n=15 Tax=Actinobacteria (class) RepID=A0LUT9_ACIC1 Length = 703 Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust. Identities = 231/580 (39%), Positives = 335/580 (57%), Gaps = 47/580 (8%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 +++Y + + VL+GL+AVRKRPGMYIG TD GL H V+E++DNA+DEALAG+ I V Sbjct: 25 TDAYTARHLLVLEGLEAVRKRPGMYIGSTDS-RGLMHCVWELLDNAVDEALAGYGDAIDV 83 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 ++AD SV V+D GRGIP + P+ G++ EV+ T LHAGGKF +Y SGGLHGVG S Sbjct: 84 IVYADGSVEVRDTGRGIPVDVEPKTGLTGVEVVFTKLHAGGKFGGGAYGTSGGLHGVGAS 143 Query: 122 VVNALSQKLELVIQREGKI--------HRQIYEHGVPQAPLAVTGETEK--------TGT 165 VVNAL+ +L++ + R+G R I++ P+AP G K TGT Sbjct: 144 VVNALAARLDVEVDRDGATWTMSFRRGRRGIFDGPGPKAPFRPGGGLAKARRLPRKVTGT 203 Query: 166 MVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAF 225 VRFWP + F + + L R R+ +FL G++I +RD+ + F + GG K F Sbjct: 204 RVRFWPDPQIFLRDARIDLDALIARARQTAFLVPGLAITIRDETTAYAETFRFSGGTKDF 263 Query: 226 VEYLNKN---KTPIHPNIFY-----------------FSTEKDGIG---VEVALQWNDGF 262 +YL +T + + S +D I V+VAL+W+ G+ Sbjct: 264 ADYLAAEAGAQTSVSGTLQLRGTGQFTETVPVLDDRGHSVPQDVIREMVVDVALRWDSGY 323 Query: 263 QENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAV 322 I F N + GG+H+ GF A+ + ++ K + DD EGL AV Sbjct: 324 DTVIRSFVNVVATPKGGSHVTGFERAVVKVVSDAARSARLVKDEPI--VKDDVLEGLTAV 381 Query: 323 VSVKVPDPKFSSQTKDKL----VSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDA 378 VSV+ P+P+F QTK+ L + V V + + + + ++ V+ K++ A Sbjct: 382 VSVRFPEPQFDGQTKEVLGTPAATRIVFDVVSRGLRAFFSSTRRVDRQASRAVLEKVVAA 441 Query: 379 ARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNR 438 AR R A R +E RRK AL+ A LP KLADC+ D + +EL++VEGDSA G+AK RN Sbjct: 442 ARTRRALRAHKEAQRRKNALESAALPAKLADCRSTDASRTELFIVEGDSALGTAKLARNS 501 Query: 439 KNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTD 498 + QA+LP++GKILNV+KA ML++ E A +I +G G GR ++ D +RY +IIMTD Sbjct: 502 EFQALLPIRGKILNVQKADLSDMLNNAECAAIIQVIGAGSGR-SFSLDAVRYGKVIIMTD 560 Query: 499 ADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 ADVDG+HIR LLLT F+R M +++ G ++ A PPL++++ Sbjct: 561 ADVDGAHIRCLLLTLFFRYMRPLLDAGRIFAAVPPLHRIE 600 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 61/105 (58%), Gaps = 7/105 (6%) Query: 707 IERGERRQPVASFEQA-----LDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRR 761 IE R+ PV ++ A L L ++ R + QRYKGLGEM+ QL ETTMDP R Sbjct: 599 IEVSGRKDPVYTYSDAELHRLLADLDRQGIRYKTPQRYKGLGEMDAAQLAETTMDPAHRV 658 Query: 762 MLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENA--LKAANIDI 804 + R+T+ DA AA+ F LMG V PR+ FI +A L + ID+ Sbjct: 659 LRRMTLTDAAAAEAAFELLMGGDVVPRKEFIAASAATLDRSRIDV 703 >UniRef50_P43703 DNA topoisomerase 4 subunit B n=456 Tax=Bacteria RepID=PARE_HAEIN Length = 632 Score = 370 bits (951), Expect = e-101, Method: Compositional matrix adjust. Identities = 219/554 (39%), Positives = 328/554 (59%), Gaps = 18/554 (3%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 M+ +Y + I VLK L+ V+ RPGMY D T +H+ EV+DN++DEALAG +I Sbjct: 1 MTTNYSAQEITVLKDLEPVQIRPGMYT----DTTRPNHLAQEVIDNSVDEALAGFATKIE 56 Query: 61 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 V +H D S+ V D+GRG+P IHP EGVS EVI+T LHAGGKF + +Y+ +GGLHGVG+ Sbjct: 57 VILHPDQSIEVTDNGRGMPVDIHPTEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGI 116 Query: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK--TGTMVRFWPSLETFTN 178 SVVNALS+++++ ++R G+I++ +E+G L + G + TGT+V F P+ + F + Sbjct: 117 SVVNALSERVDIQVKRNGEIYKIAFENGSKVEELEIIGTCGRRTTGTIVHFKPNPKYF-D 175 Query: 179 VTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAF-VEYLNKNKT-PI 236 +F L LR + L SG+ I+ DK + +D + YE G+ + +E +N +T P Sbjct: 176 SAKFSVSRLRHLLRAKAVLCSGLEIKFIDKVNNTQDIWLYEDGLSDYLIEAVNGFETLPK 235 Query: 237 HPNIFYFSTEKDGIGVEVALQW-NDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNA 295 P + F + V AL W +G + + N IP GGTH+ G R + + Sbjct: 236 KPFVGEFKGANE--AVSWALLWLPEGGELIGESYVNLIPTIQGGTHVNGLRQGLLDAIRE 293 Query: 296 YMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNE 355 + + + V T DD + ++S+K+ D +F+ QTK++L S + V + + Sbjct: 294 FCEFRNLLPRG-VKLTADDIWDRCSYILSLKMQDAQFAGQTKERLSSRQSAVFVSGVLKD 352 Query: 356 LLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDP 415 + +L +N DA+ + I +A+ R R A+++ R+K + LPGKLADC +D Sbjct: 353 AFSLWLNQNVQDAEKLAEIAISSAQRR--LRAAKKVVRKK-LVSGPALPGKLADCGSQDL 409 Query: 416 ALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALG 475 +EL+LVEGDSAGGSAKQ R+R+ QAILPL+GKILN + D++L S E+ + AL Sbjct: 410 EKTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPDQVLGSTEIHDIAVAL- 468 Query: 476 CGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLY 535 GI D + +LRY + I+ DAD DG HI TLL F R P++V+ GHVY+A PPLY Sbjct: 469 -GIDPDSNDLSQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMPPLY 527 Query: 536 KVKKGKQEQYIKDD 549 ++ K+ Y D+ Sbjct: 528 RIDLNKEVFYALDE 541 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 21/32 (65%), Positives = 29/32 (90%) Query: 735 SIQRYKGLGEMNPEQLWETTMDPESRRMLRVT 766 ++QR+KGLGEMNP QL ETTMDP +RR++++T Sbjct: 559 NVQRFKGLGEMNPSQLRETTMDPNTRRLVQLT 590 >UniRef50_Q8GD47 DNA gyrase subunit B (Fragment) n=21 Tax=Bacteria RepID=Q8GD47_9MOLU Length = 393 Score = 363 bits (931), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 184/394 (46%), Positives = 257/394 (65%), Gaps = 6/394 (1%) Query: 109 YKVSGGLHGVGVSVVNALSQKLELVIQREGK-IHRQIYEHGVPQAPLAVTGETEKTGTMV 167 YKVSGGLHGVG SVVNALS +++VI+REGK H + G Q LA+ GE+ KTGT V Sbjct: 1 YKVSGGLHGVGASVVNALSLYVDVVIEREGKKFHMLFSDGGTAQTELAIIGESNKTGTTV 60 Query: 168 RFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVE 227 RF P E F F+Y + ++++L++LN G+ I L D+R K FH+ GI ++ Sbjct: 61 RFKPDPEIFKETVTFDYTTIRNKVKQLAYLNKGLKISLNDERINKSVDFHFPNGIVDYIR 120 Query: 228 YLNKNKTPIHPNIFYFSTEKDG----IGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLA 283 N+ K I+P IFY ++ G I VE+ALQ+N + EN+ F NNI +GG H Sbjct: 121 EENETKAKINPTIFYVDGKEAGDEGDIEVEIALQYNSEYNENLITFVNNINTHEGGAHED 180 Query: 284 GFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSS 343 G R A+ R +N Y +K K + DD +EG+I ++S++ DP+F QTK KL + Sbjct: 181 GLRQALVRIINRYAEKVAQQNKQPQKFSWDDIKEGMICILSIRHTDPQFEGQTKTKLANP 240 Query: 344 EVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGL 403 + K V+ + + E+L ENP DAK ++ K ++A +AR AA+RARE TRRKGALD L Sbjct: 241 DAKRVVDAILGKSFEEFLFENPNDAKAILDKNVNAQKARIAAQRAREETRRKGALDTFSL 300 Query: 404 PGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLS 463 PGKLADC+ D ++SELYLVEGDSAGGSAK GRNR QAILPL+GK+LNVE+ + + + Sbjct: 301 PGKLADCESNDSSISELYLVEGDSAGGSAKTGRNRHFQAILPLRGKVLNVERVQEVRAFA 360 Query: 464 SQEVATLITALGCGIGRDEYNPDKLRYHSIIIMT 497 + E+ +++TA+G GI +++ + K+RY I+IMT Sbjct: 361 NTEIKSIVTAVGTGI-KEDIDLSKIRYGKIVIMT 393 >UniRef50_B3R5I8 DNA topoisomerase IV, subunit B n=15 Tax=Proteobacteria RepID=B3R5I8_CUPTR Length = 663 Score = 356 bits (914), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 225/591 (38%), Positives = 327/591 (55%), Gaps = 39/591 (6%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 ++ Y SSI+VLKGL+ V++RPGMY TD+ H+V EV+DNA DEAL GH EI+V Sbjct: 5 TSQYSESSIRVLKGLEPVKQRPGMYT-RTDNPL---HIVQEVIDNASDEALGGHGSEILV 60 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHA---GGKFDDNSYKVSGGLHGV 118 T+H D S+SV+DDGRGIP GIHPEEGV E++ T LHA K +Y SGGLHGV Sbjct: 61 TLHRDGSLSVEDDGRGIPVGIHPEEGVPVVEIVFTRLHAGGKFDKGKGGAYAFSGGLHGV 120 Query: 119 GVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAV----TGETEKTGTMVRFWPSLE 174 GVSV NALS +L++ + R+G + G PLA GE +K GT V+ WP Sbjct: 121 GVSVTNALSTQLDVTVWRDGMCSTLTFSGGDVTVPLASRKLERGE-KKNGTRVQVWPDAR 179 Query: 175 TFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAF-VEYLNKNK 233 F + L + LR + L GV + L ++ G+ + Y+ G+K + VE L + Sbjct: 180 YFDSAA-IPLAELQRLLRSKAVLLPGVKVTLVTEKTGERQTWQYDQGLKGYLVEALAQGS 238 Query: 234 -----TPIHPNIFYFSTE--------KDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGT 280 P+ + + DG G + W + + N IP GGT Sbjct: 239 GAELVIPMFEGEHFADPDANPGEEGFADGEGASWVVAWTEDGAPVRESYVNLIPTPAGGT 298 Query: 281 HLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKL 340 H +G R + + + ++++ K V +D V+S KV DP+F Q K++L Sbjct: 299 HESGLREGLFQAVKSFIEMHALQPKG-VKLMSEDVFARASFVLSAKVLDPQFQGQIKERL 357 Query: 341 VSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDL 400 S + V L +L + K + +I A+AR R A+++ ++KG+ + Sbjct: 358 NSRDAVRLVSTFSRPALELWLNHHVEYGKKLAELVIRQAQAR--TRAAQKVEKKKGS-GV 414 Query: 401 AGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 460 A LPGKL DC+ D +EL+LVEGDSAGGSAK GR+++ QAILPL+GK+LN + D+ Sbjct: 415 AVLPGKLTDCESTDVTRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNTWETERDR 474 Query: 461 MLSSQEVATLITALGCGI--GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQM 518 + ++ EV + A+G DE + LRY I I++DADVDG+HI+ LLLT F+R Sbjct: 475 LFANNEVHDIAVAIGVDPHGANDEPDLSNLRYGKICILSDADVDGAHIQVLLLTLFFRHF 534 Query: 519 PEIVERGHVYIAQPPLYKV------KKGKQEQYIKDDEAMDQYQISIALDG 563 P+++E G+VY+A+PPL++V KK Q+ Y D+ ++ Q + DG Sbjct: 535 PKLIETGNVYVARPPLFRVDAPARGKKPAQKLYALDEGELEAIQDKLLKDG 585 Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 30/64 (46%), Positives = 42/64 (65%), Gaps = 3/64 (4%) Query: 736 IQRYKGLGEMNPEQLWETTMDPESRRMLRVTVK--DAIAADQLFTTLMGDA-VEPRRAFI 792 I R+KGLGEM+ EQLWETTM+P++RR+L VT+ D ++ LMG RR+++ Sbjct: 593 ISRFKGLGEMSAEQLWETTMNPDTRRLLPVTLGEYDLPQTVEMMNMLMGKGEAAQRRSWL 652 Query: 793 EENA 796 EE Sbjct: 653 EEKG 656 >UniRef50_Q4UIX0 DNA topoisomerase II, putative n=2 Tax=Theileria RepID=Q4UIX0_THEAN Length = 922 Score = 353 bits (906), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 236/653 (36%), Positives = 345/653 (52%), Gaps = 113/653 (17%) Query: 5 YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIH 64 Y S I VL+GL+AVRKRPGMYIG+T + G+H +++EV+DN++DE LAG C I V++ Sbjct: 106 YSSDDIIVLEGLNAVRKRPGMYIGNTGE-RGVHQLLYEVLDNSVDEYLAGFCNRITVSLM 164 Query: 65 ADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDD----NSYKVSG------- 113 D SV V D+GRGIP I P+ G S E ++TVLH+GGKF D NS +S Sbjct: 165 KDGSVEVSDNGRGIPCDISPKTGKSGLETVLTVLHSGGKFQDIFPPNSTSMSSEDQNDLK 224 Query: 114 -------------------GLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPL 154 GLHGVG+SVVNALS+ L + + + K + G PL Sbjct: 225 SRKKGEKEHEEKKVYEYSSGLHGVGLSVVNALSELLIVDVYKGPKSYHIELSKGNIVKPL 284 Query: 155 AVTGETEKT----------GTMVRFWP-------------------SLETFTNVT----- 180 A E E T GT +RF P +T TN + Sbjct: 285 AEFSEPETTEKSNNNLKRYGTTIRFLPDYKNIFKTHHQHTETEKEEDYDTTTNKSGLDTK 344 Query: 181 ------EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYE------GGIKAFVEY 228 F E++ R +ELS+LN G+SI+L D R E++ +E GG ++F+E Sbjct: 345 CSGCKNGFILELIKTRAKELSYLNPGLSIKLVDYRITDENNEPWEETYRNTGGTRSFLEE 404 Query: 229 LNKNKTPIHPNIFYFSTEK--DGIGVEVALQWN-DGFQENIYCFTNNIPQRDGGTHLAGF 285 L K+KTP++ I Y + + I VEV+ W+ + + I + NN+ GTH+ GF Sbjct: 405 LIKDKTPLYKPISYITIKGVISNINVEVSFSWSLESYTALIKGYANNVSTI-AGTHIDGF 463 Query: 286 RAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEV 345 + ++TR +N + K GY K G+ REG+ AV+SVK+ +F QTK KL ++ V Sbjct: 464 KISITRCVNGLLKKYGYFKGNVKPLNGEFIREGMTAVISVKLTGAEFDGQTKTKLGNALV 523 Query: 346 KSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPG 405 K+ E+ +NE L N + K A +A +AAR A+++ R+K + ++ + G Sbjct: 524 KTVTEKIVNEQFTNILENNKELLLAIHNKSQAAKKAFDAARTAKDLIRQKSSSIVSNISG 583 Query: 406 KLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD-KMLSS 464 KL +C +EL++VEG+SA G+AKQ RNR+ QA+LPLKGKILN+EK + K+L + Sbjct: 584 KLTECSSSKVENNELFIVEGESAAGNAKQARNRQFQAVLPLKGKILNIEKITDNSKVLEN 643 Query: 465 QEVATLITALGCGIGRDEYNPD-------------------------------KLRYHSI 493 Q++ L+ ++G I + + KLRY I Sbjct: 644 QQIQLLMNSIGISINPVTWRQNDLTEGTHMAMDRFIEMNSSKLTRKQIWLDLSKLRYGKI 703 Query: 494 IIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYI 546 I++TDADVDGSH+++LLL YR P + G VY+A PPLY++ + ++YI Sbjct: 704 ILLTDADVDGSHLKSLLLCLLYRLCPSLYLHGRVYVASPPLYRITNLRNKKYI 756 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 2/78 (2%) Query: 729 ESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPR 788 ++ + L IQR+KGLGEM QLWETTMDP+ R + R+ V ++ LMG V+ R Sbjct: 845 KNNKHLIIQRFKGLGEMMANQLWETTMDPKKRILKRIVVSQEPEISEIIRLLMGSDVQSR 904 Query: 789 RAFIEEN--ALKAANIDI 804 + +I N A ++DI Sbjct: 905 KQYIFNNSGAFNLEDLDI 922 >UniRef50_UPI00016B23A5 DNA gyrase subunit B n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B23A5 Length = 486 Score = 350 bits (897), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 186/383 (48%), Positives = 258/383 (67%), Gaps = 5/383 (1%) Query: 176 FTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTP 235 F F+Y+ + LR ++L GV + D+R G+ F++EGGIK++V+ LN K Sbjct: 4 FKETVNFDYKWVVNYLRHQAYLTKGVYTSVVDERTGERKAFYFEGGIKSYVKNLNIGKEV 63 Query: 236 IHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNA 295 + +IFY + + VE+A+Q+ND + E + F NN+ DGGTHL GFR A+TR +N Sbjct: 64 LSEDIFYVEKQIEDCMVEIAVQYNDTYVEVVKPFANNVLTPDGGTHLVGFRTALTRVIND 123 Query: 296 YMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNE 355 Y K K+ + + TGDD REGL AV+ VK+PDP+F QTK+KL + E++ V+Q M+E Sbjct: 124 YARKNNLLKEKEDNLTGDDIREGLTAVILVKLPDPQFEGQTKNKLGNPEMRRYVDQVMSE 183 Query: 356 LLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDP 415 A YL ENP AK VVGK AARAR+AAR AR+ RKGA + LP KL DC R+ Sbjct: 184 YFAYYLEENPATAKKVVGKATLAARARKAARAARDNVIRKGAFEGLNLPSKLTDCSSRNR 243 Query: 416 ALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALG 475 EL++VEG+SA GSAK GR+ QAILPL+GK+LN E+ARFDKM ++ E+ +LI A+G Sbjct: 244 KDCELFIVEGNSAAGSAKDGRDSTIQAILPLRGKVLNTERARFDKMFANAEIVSLIKAMG 303 Query: 476 CGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLY 535 GIG D+++ +RY II MTDADVDG+HI TLL+TFF+R M E++E GHVY+A+PPL+ Sbjct: 304 VGIG-DQFDISGIRYDKIIFMTDADVDGAHISTLLMTFFFRYMSEVIEAGHVYLAKPPLF 362 Query: 536 KVKKG----KQEQYIKDDEAMDQ 554 + KG ++ YI D+ A+++ Sbjct: 363 GLSKGTGSNRKIDYIYDEAALEE 385 Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 37/62 (59%), Positives = 50/62 (80%) Query: 737 QRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENA 796 QR+KGLGEM+ QLWETTM+PE+R +++V ++DA AD +FT LMGD+VE R+ FI+ NA Sbjct: 417 QRFKGLGEMDASQLWETTMNPENRTLVKVNIEDAERADAIFTKLMGDSVELRKNFIQTNA 476 Query: 797 LK 798 K Sbjct: 477 AK 478 >UniRef50_B1N7R8 Gyrase b (Fragment) n=1 Tax=uncultured bacterium RepID=B1N7R8_9BACT Length = 366 Score = 347 bits (891), Expect = 8e-94, Method: Compositional matrix adjust. Identities = 224/366 (61%), Positives = 261/366 (71%), Gaps = 48/366 (13%) Query: 92 EVIMTVLHAGGKFDDNSY-KVSGGLH-GVGVSVVNALSQKLELVI-QREGKIH-RQIYEH 147 EVIMTVLHAGGKFDDNSY +VSGGL GVGVSVVNALS KL L+I R G++H +Q Y H Sbjct: 1 EVIMTVLHAGGKFDDNSYTRVSGGLQDGVGVSVVNALSSKLHLIILHRAGQVHEKQEYHH 60 Query: 148 GVPQAPLAV-TGETEKTGTMV-RFWPSLETFTN---VTEFEYEILAKRL-RELSFLNSGV 201 G Q PL V GET+ +GT V RFWPS TF++ T F EILA+RL RELSFLN+GV Sbjct: 61 GDTQYPLRVLIGETDSSGTTVNRFWPSGLTFSHGECRTIFNVEILARRLLRELSFLNAGV 120 Query: 202 SIRLRDKRDGKEDHF-HYEGGIKAFVEY-LNKNKTPI----------------------- 236 I LRD+R E + YEGG+ FV+Y +N+ KT + Sbjct: 121 RIVLRDERINLEHVYAXYEGGLSEFVKYFINEGKTHLNEIFHFXTADTENGIGVKYINEG 180 Query: 237 --HPN-IFYFSTEKD-GIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRA--AMT 290 H N IF+F+ + D GI VEVALQWND +QEN+ CFTNNIPQ+DGGTHLAGFRA A+T Sbjct: 181 KNHLNEIFHFTADADNGIAVEVALQWNDSYQENVRCFTNNIPQKDGGTHLAGFRALQALT 240 Query: 291 RTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVE 350 R LN Y++ E KK KV+ TGDDAREGL A++SVKVPDPKFSSQTK+KLVSSEVK AVE Sbjct: 241 RGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKPAVE 300 Query: 351 QQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRARE---MTRRKGALDLA---GL- 403 Q MN+ + YLLENP AK + GKIIDAARAR+AAR+ARE MTRRK ALD+A GL Sbjct: 301 QAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREGSYMTRRKSALDIAYPIGLP 360 Query: 404 PGKLAD 409 PGKLAD Sbjct: 361 PGKLAD 366 >UniRef50_A7ASL8 DNA gyrase subunit B, putative n=1 Tax=Babesia bovis RepID=A7ASL8_BABBO Length = 944 Score = 345 bits (885), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 203/551 (36%), Positives = 311/551 (56%), Gaps = 67/551 (12%) Query: 5 YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIH 64 Y + I VL+GL+AVRKRPGMYIG+T + TGLH ++FE++DN++DE LAG C +I VT+ Sbjct: 150 YSTDDIVVLQGLEAVRKRPGMYIGNTTE-TGLHQLLFEILDNSVDEYLAGCCNKITVTLR 208 Query: 65 ADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDD------------------ 106 AD S + D+GRGIP + + G S E ++TVLH+GGKF+D Sbjct: 209 ADGSAEISDNGRGIPCDVSEKTGKSGLETVLTVLHSGGKFNDTTSKPTPEDQVDEFYDTH 268 Query: 107 ----------------------NSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQI 144 N Y+ + GLHGVG+SVVNALS L + + K + Sbjct: 269 ISRKFRSQHVRGLRKRLKDASSNPYEYASGLHGVGLSVVNALSAWLRADVYKGTKQYSIQ 328 Query: 145 YEHGVPQAPLAVTGETEKTGTMVRFWPSL--------------ETFTNVTEFEYEILAKR 190 G+ PL+V+ ++TGT + F P E + F ++ + R Sbjct: 329 LSRGMVTEPLSVSKCAKRTGTTISFMPDYDHVFIAHHDHQVDTECPGCASAFNHDTVRNR 388 Query: 191 LRELSFLNSGVSIRLRDKR----DGK--EDHFHYEGGIKAFVEYLNKNKTPIH--PNIFY 242 + ELS++N +++RL D+R DG E+ F ++GG + F++ + K++ P++ NI Sbjct: 389 IEELSYVNPMLTLRLVDERLVNEDGSFHEETFMHKGGTREFLQDIIKDRVPLYKSANIIN 448 Query: 243 FSTEKDGIGVEVALQWN-DGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEG 301 + G+ VEV+L W + + + F NN+ GTH+ GF+AA+T+ +N + G Sbjct: 449 IRGKSGGVEVEVSLSWAAETYAAQLKGFANNV-STSAGTHIEGFKAAITKAVNHACRRAG 507 Query: 302 YSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYL 361 K S +G+ REGL A++SVK+ +F QTK KL + ++AVE+ ++ + E L Sbjct: 508 LFKHKAPSISGEFIREGLTAIISVKLMGAEFDGQTKSKLGNQIARTAVERIVSYQMNEIL 567 Query: 362 LENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDL-AGLPGKLADCQERDPALSEL 420 ++P + K I A RA E A+ A+E+ R+K A L GLP KL+DC D L+EL Sbjct: 568 EKHPQLLTAIYNKSIAAKRAFEVAKHAKELVRQKNANFLTTGLPAKLSDCTSNDIGLTEL 627 Query: 421 YLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD-KMLSSQEVATLITALGCGIG 479 ++VEG+SA G+AKQ RNR+ QA+LPLKGKILN+EK D K++ ++E+ LI+++G + Sbjct: 628 FIVEGESAAGNAKQARNRRFQAVLPLKGKILNIEKISSDLKVMENEEIKLLISSIGLAVN 687 Query: 480 RDEYNPDKLRY 490 + D L + Sbjct: 688 PQTWRQDTLSH 698 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 31/68 (45%), Positives = 50/68 (73%) Query: 729 ESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPR 788 +S RG+++QR+KGLGEM +QLW+TTM+P+ R + R++V+D + A ++ LMG V+ R Sbjct: 867 DSMRGITVQRFKGLGEMMAQQLWDTTMNPDKRILRRISVQDGMRASKMLELLMGGDVQSR 926 Query: 789 RAFIEENA 796 + FI +A Sbjct: 927 KEFIFTHA 934 Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 29/50 (58%), Positives = 38/50 (76%) Query: 488 LRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKV 537 LRY II++TDADVDG+H+R LLL +R P++ E G VYIA PPLY++ Sbjct: 758 LRYGKIILLTDADVDGAHLRILLLGLLFRICPQLYEHGRVYIACPPLYRI 807 >UniRef50_A1EGM8 DNA gyrase subunit B (Fragment) n=1 Tax=uncultured bacterium RepID=A1EGM8_9BACT Length = 428 Score = 343 bits (880), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 208/436 (47%), Positives = 274/436 (62%), Gaps = 25/436 (5%) Query: 92 EVIMTVLHAGGKFDD----NSYKVSGGLHGVGVSVVNALSQKLELVIQREG-KIHRQIYE 146 EVIMTVLHA GKFD+ ++YK SGGLHGVG SVVNALS +L + I+R+G H++ Sbjct: 1 EVIMTVLHAAGKFDNETGESAYKTSGGLHGVGASVVNALSTRLTMEIKRDGFTWHQEFRG 60 Query: 147 HGVPQAPLAVTGETEKTGTMVRFWPSLETFT-----NVTEFEYEILAKRLRELSFLNSGV 201 G P A LA+ + + GT +RFWP F + F+ E +A+ L + LN G+ Sbjct: 61 GGEPVAELAMGKPSREHGTTIRFWPDPTIFVPEEGQDPLSFDKERVARSLSTRAHLNPGL 120 Query: 202 SIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIF-------YFSTEKDGIGVEV 254 +I + D+RDG E + E +F E L+ T +F T+K + V V Sbjct: 121 AITMIDERDGSEQTWKAE----SFAEILDDLATVSSAPVFGPLSETAAVDTDKGRVEVMV 176 Query: 255 ALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDD 314 AL+ + I + NNI GGTH AG R+A+ + +NAY G K+ T +D Sbjct: 177 ALRVHAERASTIASYANNIVTPQGGTHEAGMRSALLKAINAYGKTNGLLKE---PLTAED 233 Query: 315 AREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGK 374 +EGL+A V+V+V +P F+ QTKDKL ++E AV Q + LL+++ ENP DAK ++ + Sbjct: 234 VQEGLVAAVAVRVTEPLFAGQTKDKLANTECTGAVMQVVYRLLSKHFEENPKDAKNLINR 293 Query: 375 IIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQ 434 AA+AR AA +ARE+ RK L GLPGKLADCQE DP+L ELY+VEGDSAGGSAKQ Sbjct: 294 AALAAKARAAAEKARELVERKNPLSGGGLPGKLADCQESDPSLCELYIVEGDSAGGSAKQ 353 Query: 435 GRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSII 494 GR+RK QAILPLKGK LNV K K L SQE++ + T LGCG+ + ++ KLRYH +I Sbjct: 354 GRDRKFQAILPLKGKPLNVMKYDMGKALKSQEISNITTVLGCGV-LNTFDISKLRYHRVI 412 Query: 495 IMTDADVDGSHIRTLL 510 IMTDADVDGSHIRTLL Sbjct: 413 IMTDADVDGSHIRTLL 428 >UniRef50_B9PF30 Predicted protein n=6 Tax=cellular organisms RepID=B9PF30_POPTR Length = 252 Score = 312 bits (800), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 144/253 (56%), Positives = 197/253 (77%), Gaps = 1/253 (0%) Query: 552 MDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIY 611 M Q+++++AL+G++L+ N +APA+ G ALEKL+SEYN+ QKMI+ + YP+ +LK LIY Sbjct: 1 MQQFELNLALEGSSLYVNENAPAMNGIALEKLISEYNSVQKMISHLSFHYPEILLKSLIY 60 Query: 612 QPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGV 671 Q LT ++DE V W +LV+ L DK+ GS +K+ + N E++L+E ++ +RTHG+ Sbjct: 61 QKALTNEMMTDESAVDFWAKSLVNILTDKKISGSSYKYRIVFNNERHLYEVVIIIRTHGI 120 Query: 672 DTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESR 731 + +Y L+ EF+ G EY RI LG +L+GLLE+ A++ RGER+Q V+SFEQA++WL KESR Sbjct: 121 EKNYFLNFEFLNGTEYSRIVKLGNQLQGLLEKGAYVSRGERQQSVSSFEQAIEWLTKESR 180 Query: 732 RGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAF 791 RGL IQRYKGLGEMN +QL+ETTMDP R ML+V++KDA+AADQLFTTLMGD VEPRR F Sbjct: 181 RGLIIQRYKGLGEMNSDQLFETTMDPNKRTMLKVSIKDAVAADQLFTTLMGDEVEPRREF 240 Query: 792 IEENALKAANIDI 804 IE NAL+ AN+DI Sbjct: 241 IEMNALR-ANLDI 252 >UniRef50_A7K5X7 DNA gyrase subunit B n=5 Tax=Gammaproteobacteria RepID=A7K5X7_VIBSE Length = 246 Score = 307 bits (787), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 149/246 (60%), Positives = 181/246 (73%) Query: 559 IALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEA 618 +ALD A+LH NA APALAGEALEKLV +YNA K+ RM RRYP A++ ELIY P LT Sbjct: 1 MALDNASLHVNAEAPALAGEALEKLVQQYNAGIKLAERMSRRYPSALVNELIYTPRLTPE 60 Query: 619 DLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLD 678 D V W L+ +LN KE SQ+ ++V + E L P + VRTHGV ++ + Sbjct: 61 QCHDASVVEAWTKQLIEQLNAKEVGASQYSYEVEQHEELGLNLPKIVVRTHGVTHEHAIS 120 Query: 679 HEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQR 738 +F+ EY ++ L E L GLLEE A+I+RGER PVASF +ALDWLVKES RGLS QR Sbjct: 121 IDFLNSKEYGKLADLSEALDGLLEEGAYIKRGERTMPVASFAEALDWLVKESMRGLSRQR 180 Query: 739 YKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALK 798 YKGLGEMNP+QLWETTMDPE+RRM++VT++DA+ ADQLFTTLMGD VEPRR FIEENALK Sbjct: 181 YKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADQLFTTLMGDQVEPRRNFIEENALK 240 Query: 799 AANIDI 804 AN+D+ Sbjct: 241 VANLDV 246 >UniRef50_B6EUG7 DNA gyrase subunit B (Fragment) n=6 Tax=Actinomycetales RepID=B6EUG7_RHOER Length = 446 Score = 301 bits (770), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 147/284 (51%), Positives = 203/284 (71%), Gaps = 1/284 (0%) Query: 212 KEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTN 271 K+ +HY G+ +V+YLNK+K+ IHP I F + D VE+A+QWN G++E+++ F N Sbjct: 164 KKVSYHYPDGLIDYVKYLNKSKSEIHPTIVGFEAKGDDHEVEIAMQWNSGYKESVHTFAN 223 Query: 272 NIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPK 331 I +GGTH GFRAA+T +N Y + K+ + TGDD REGL AVVS +V DP+ Sbjct: 224 TINTHEGGTHEEGFRAALTTLMNRYAREHKLLKEKDPNLTGDDCREGLAAVVSARVGDPQ 283 Query: 332 FSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREM 391 F QTK KL ++E+K V++ +NE LA + NP +AK +V K + ++ AR AAR+AR++ Sbjct: 284 FEGQTKTKLGNTELKGFVQRAVNEHLAFWFDANPAEAKAIVNKAVASSHARVAARKARDL 343 Query: 392 TRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKIL 451 RRK A D+ GLPGKLADC+ +DP +EL++VEGDSAGGSAKQGR+ QAILPL+GKIL Sbjct: 344 VRRKSATDMGGLPGKLADCRTKDPNAAELFIVEGDSAGGSAKQGRDSMYQAILPLRGKIL 403 Query: 452 NVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 495 NVEKAR D++L + EV +ITALG GI +E++ +KLRYH I++ Sbjct: 404 NVEKARLDRVLKNAEVQAIITALGTGI-NEEFDIEKLRYHKIVL 446 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 49/101 (48%), Positives = 69/101 (68%), Gaps = 2/101 (1%) Query: 109 YKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVR 168 Y VSGGLHGVG+SVVNALS ++E I+R GK Q + VP L TGT +R Sbjct: 1 YAVSGGLHGVGISVVNALSTRVEADIKRAGKHWIQNFNMAVPD-ELVEGSNARGTGTAIR 59 Query: 169 FWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKR 209 FWP E F TEF+++++++RL+E++FLN G++I L+D+R Sbjct: 60 FWPDPEIF-ETTEFDFDVISRRLQEMAFLNKGLTITLKDER 99 >UniRef50_Q2JC55 DNA topoisomerase II n=4 Tax=Actinomycetales RepID=Q2JC55_FRASC Length = 658 Score = 298 bits (764), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 166/401 (41%), Positives = 235/401 (58%), Gaps = 10/401 (2%) Query: 5 YDSSSIKVLKGLDAVRKRPGMYIGDTDDGT-GLHHMVFEVVDNAIDEALAGHCKEIIVTI 63 Y + SI + GL AVR+ P MYIG T GT GLHH+VFE++DNA+DE G C I V + Sbjct: 14 YTARSIVLFSGLTAVRRNPSMYIGST--GTEGLHHLVFELIDNAVDEFAVGTCGLIEVVL 71 Query: 64 HADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVV 123 HAD S SV DDGRGIP HP+ V A +V+MT LH+GGKF ++Y+ S GLHGVG+S V Sbjct: 72 HADGSCSVSDDGRGIPVDEHPDLRVPALQVVMTTLHSGGKFQGDTYRRSAGLHGVGLSCV 131 Query: 124 NALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFE 183 NALS+ L + + R+G ++ Q Y G P + + G +++ GT+VRF P + F + F Sbjct: 132 NALSEWLRVEVHRDGGMYTQSYGRGEPTTTVDMVGTSDRHGTLVRFRPDMMIF-DAAAFV 190 Query: 184 YEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYF 243 +LA R+ EL+FL+ G+ +RL D+R E+ F Y G+K F+ N++ +HP Sbjct: 191 TGVLAARMAELAFLHPGLVLRLVDERTDTEETFDYVEGVKGFLTQRNRDAEVVHPEPIII 250 Query: 244 STEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLN--AYMDKEG 301 + E+ + ++VALQW +G+ E + F N + GG H+ R + +N A M++ Sbjct: 251 TAERSDLVLDVALQWTEGYAEEMSSFVNAVRTDQGGAHVDALRTGLASAINDHASMNRM- 309 Query: 302 YSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYL 361 A T +D EGL AVVS+++ P+F QTK +L S EV V + + E +A L Sbjct: 310 LDSFAGERITTNDILEGLTAVVSLRMDSPRFDGQTKRRLQSPEVGPFVRRAVAETVAATL 369 Query: 362 LENPTDAKIVVGKIIDAARAREAAR---RAREMTRRKGALD 399 P VV + +DA RAR AAR RA RRK +D Sbjct: 370 RREPGLGARVVARALDATRARLAARLAGRAVRYQRRKLEID 410 >UniRef50_Q7RHG3 DNA topoisomerase II, putative n=3 Tax=Plasmodium (Vinckeia) RepID=Q7RHG3_PLAYO Length = 930 Score = 294 bits (752), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 189/511 (36%), Positives = 275/511 (53%), Gaps = 52/511 (10%) Query: 109 YKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTG-ETEKTGTMV 167 YK S GLHGVG+SV NALS +++ + R+ KI+ E G L V +K GT + Sbjct: 272 YKYSSGLHGVGLSVSNALSTFMKVNVFRDNKIYNIELEKGKVVKELNVQDCPIKKRGTQI 331 Query: 168 RFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDG---------------- 211 + P F + E + RL +L++LN ++ D+R+ Sbjct: 332 HYKPDNTIFKTNIKHNSEFIKNRLHQLAYLNDKLTFYFYDERNSNKGNSDKVSENVENNS 391 Query: 212 --KEDHFHYE-----GGIKAFVEYLNKNKTPI---HPNIFYFSTEKDGIGVEVALQW-ND 260 K D++ YE GG+ ++E L KNKT I + + S + I V++ L+W + Sbjct: 392 YTKLDNYEYEIIKHEGGLDEYMEKLTKNKTNIFKTNNKVISISCFQKNIHVDLKLKWVTN 451 Query: 261 GFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLI 320 + ENI F NN+ DGGTH+ + A++R++N Y K+ + K V+ G+ REGL Sbjct: 452 QYNENILSFVNNVNTIDGGTHVDAMKYAISRSIN-YNVKKNETIKNFVNIPGEYIREGLT 510 Query: 321 AVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAAR 380 A++S+K+ +P+F QTK KL S +K +E + E L+E P + K + A + Sbjct: 511 AILSIKMNNPEFEGQTKTKLGSYYLKPILESIIFEKLSEIFDFEPNLLNTIYLKALQAKK 570 Query: 381 AREAARRAREMTRRKGALDLAG-LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRK 439 + E A+ AR++ R K + LPGKL DC D + +E+++VEGDSA GSAKQ RNR+ Sbjct: 571 SDEEAKAARDLIRSKNNQYYSTILPGKLVDCISDDISKNEIFIVEGDSAAGSAKQARNRE 630 Query: 440 NQAILPLKGKILNVEKARFD-KMLSSQEVATLITALGCGIGRD-----EYNPDK------ 487 QAILPLKGKILNVEK + + K+ + E+ +LITA+G + D + N +K Sbjct: 631 IQAILPLKGKILNVEKIKNNKKIFENIELKSLITAIGLNVNYDNSKTGKSNTNKRNDNKD 690 Query: 488 ----------LRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKV 537 LRY IIIMTDADVDG HI LLLTF YR EI+E G+VY+A PPLYKV Sbjct: 691 IKKNNFIDTSLRYGKIIIMTDADVDGEHICILLLTFLYRFQKEIIENGNVYVACPPLYKV 750 Query: 538 KKGKQEQYIKDDEAMDQYQISIALDGATLHT 568 K D + ++ ++ +HT Sbjct: 751 TYNKFFDNNIKDSVISKFNVTTKASKYIIHT 781 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 57/104 (54%), Positives = 77/104 (74%), Gaps = 1/104 (0%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 N+YD+ I +L+GL+AVRKRPGMYIG+TD GLH ++FE+VDNA+DE C +I V Sbjct: 111 NNYDAKDIVILEGLEAVRKRPGMYIGNTD-SKGLHQILFEIVDNAVDEYNNHECNQIKVI 169 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDD 106 IH D S++++D+GRGIP IH + SA E ++TVLH+G KF D Sbjct: 170 IHNDESITIEDNGRGIPCDIHEKTKKSALETVLTVLHSGAKFLD 213 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 35/71 (49%), Positives = 51/71 (71%) Query: 726 LVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAV 785 ++ S + IQR+KGLGEM +QLW TTMDP+ R+++RVTV DAI A+ L +LMG+ Sbjct: 857 VIFSSSKKYEIQRFKGLGEMMADQLWSTTMDPQVRKLIRVTVSDAIKANNLINSLMGEDS 916 Query: 786 EPRRAFIEENA 796 + R+ FI +N+ Sbjct: 917 KSRKDFIIKNS 927 >UniRef50_Q6UGM9 DNA gyrase B subunit (Fragment) n=1 Tax=Fusobacterium necrophorum subsp. necrophorum RepID=Q6UGM9_9FUSO Length = 403 Score = 286 bits (732), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 174/408 (42%), Positives = 241/408 (59%), Gaps = 14/408 (3%) Query: 105 DDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAV-----TGE 159 ++++YKVSGGLHGVG+SVVNALS+ E+ ++REG ++ Q Y G P + + GE Sbjct: 1 ENDNYKVSGGLHGVGISVVNALSEWTEVKVKREGNVYYQKYLRGKPVEDVKIISTLEVGE 60 Query: 160 TEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRD--GKEDHFH 217 T TGT+V F P +E F V FEYE+L RL+EL++LN G+ I L D R+ GK++ F Sbjct: 61 T--TGTIVTFKPDIEIFETVI-FEYEVLQHRLKELAYLNRGLEINLLDCRNEIGKKESFQ 117 Query: 218 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRD 277 EGGI F++ + + + + + + +GV++A + G E IY F NNI Sbjct: 118 SEGGISDFLKEVTRENQTLLSKQIHIEGQAEQVGVDIAFTYTTGQSEVIYFFCNNIQYYR 177 Query: 278 GGTHLAGFRAAMTRTLNAYMDKEGY--SKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQ 335 G + L ++K G K K++ +E L + K + Q Sbjct: 178 GRLSCDWISNLFNKGLLMILEKAGIFEGKGWKITRRRTFGKE-LGLLFRSKFHNRNLEGQ 236 Query: 336 TKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRK 395 TK KL +SEV V ++ L +L +NP D K+++ KI+ + +AREAA+RARE RK Sbjct: 237 TKTKLGNSEVNGIVNTVLSTDLKIFLEDNPNDTKLIIEKILSSKKAREAAQRAREAVLRK 296 Query: 396 GALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 455 L++ LPGKLADC + P E++LVEGDSAGGSAKQGR+R QAILPLKGKILNVEK Sbjct: 297 SVLEVGSLPGKLADCSSKKPEECEIFLVEGDSAGGSAKQGRDRYFQAILPLKGKILNVEK 356 Query: 456 ARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDG 503 A K L S E+ ++TA G IG +E K+ II+MTDADVDG Sbjct: 357 AGLHKALESDEIRAMVTAFGTNIG-EESLIGKIEIGKIILMTDADVDG 403 >UniRef50_B3LD45 DNA gyrase subunit b, putative n=1 Tax=Plasmodium knowlesi strain H RepID=B3LD45_PLAKH Length = 992 Score = 281 bits (719), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 184/552 (33%), Positives = 270/552 (48%), Gaps = 93/552 (16%) Query: 109 YKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAV-TGETEKTGTMV 167 Y+ S GLHGVG+SV NALS +++ + R GKIH E G PL+V K GT + Sbjct: 274 YRFSSGLHGVGLSVANALSSFMKVKVFRGGKIHSIELEKGKVVTPLSVRECPVSKRGTQI 333 Query: 168 RFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------------- 213 + P + F N E++ R+ +L++LN ++ D+R K+ Sbjct: 334 HYKPDHDIFKNTIRHNAELIKNRIHQLAYLNDRLTFYFYDERSAKKVPTSVHLAKGNEAD 393 Query: 214 ----------------------DHFHYE-----GGIKAFVEYLNKNKTPIHPN---IFYF 243 D + YE GG+ ++E L KNK + + I Sbjct: 394 EVDKREDKTTDAVNTTVEHNNLDFYPYEVIKHEGGLNEYMESLTKNKASLFKDSNKIISI 453 Query: 244 STEKDGIGVEVALQWNDG-FQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGY 302 S + + +++ ++W G + E+I F NN+ DGGTH+ + A++R +N + K+ Sbjct: 454 SCHQKNVHIDLRIKWTQGQYHEHIVSFVNNVNTTDGGTHVDAMKYAISRCVN-FNIKKNE 512 Query: 303 SKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLL 362 + K V+ G+ REG+ A++S+K+ +P+F QTK KL S +K +E + E L+E Sbjct: 513 ATKNFVNIPGEYIREGMTAILSIKMNNPEFEGQTKTKLGSHFLKPILESAIFEKLSEIFD 572 Query: 363 ENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAG-LPGKLADCQERDPALSELY 421 P + K + A + E A+ AR++ R K + LPGKL DC D +E++ Sbjct: 573 FEPNLLNTIYLKALQAKASDEEAKAARDLIRSKNNQYYSTILPGKLVDCISDDINRNEIF 632 Query: 422 LVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK-MLSSQEVATLITALGCGIGR 480 +VEGDSA GSAKQ RNR+ QAILPLKGKILNVEK + +K + + E+ +LITA+G I Sbjct: 633 IVEGDSAAGSAKQARNREIQAILPLKGKILNVEKIKNNKRIFENSELKSLITAIGLSISC 692 Query: 481 DEYNPDK--------------------------------------------LRYHSIIIM 496 D K LRY IIIM Sbjct: 693 DNSKMAKGKNMLNNKKKDIKKKYDLKCSKKENVQVNNAMVNKKKNTLFDTPLRYGKIIIM 752 Query: 497 TDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQ 556 TDADVDG HIR LLLTF YR I++ G+V++A PPLYKV + + M Q+ Sbjct: 753 TDADVDGEHIRILLLTFLYRFQKNIIQNGNVFVACPPLYKVTYNRFFDNTIKETVMKQFN 812 Query: 557 ISIALDGATLHT 568 +S +HT Sbjct: 813 VSTRNSKTLIHT 824 Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 55/102 (53%), Positives = 75/102 (73%), Gaps = 1/102 (0%) Query: 5 YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIH 64 YD+ I +L+GL+AVRKRPGMYIG+TD GLH ++FE++DN++DE C EI + IH Sbjct: 111 YDAKDIVILEGLEAVRKRPGMYIGNTD-VKGLHQILFEIIDNSVDEYNNFECNEIKIVIH 169 Query: 65 ADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDD 106 D SV+++D+GRGIP IH + SA E ++TVLH+G KF D Sbjct: 170 EDESVTIEDNGRGIPCDIHEKTKKSALETVLTVLHSGAKFVD 211 Score = 79.0 bits (193), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 34/61 (55%), Positives = 47/61 (77%) Query: 736 IQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEEN 795 IQR+KGLGEM +QLW TTMDP R+++RVTV DA+ A+ L +LMG+ + R++FI EN Sbjct: 928 IQRFKGLGEMMADQLWSTTMDPSVRKLIRVTVNDAMRANNLIFSLMGEDSKLRKSFILEN 987 Query: 796 A 796 + Sbjct: 988 S 988 >UniRef50_B3SFQ4 Putative uncharacterized protein (Fragment) n=1 Tax=Trichoplax adhaerens RepID=B3SFQ4_TRIAD Length = 303 Score = 281 bits (718), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 136/248 (54%), Positives = 187/248 (75%), Gaps = 2/248 (0%) Query: 364 NPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLV 423 NP DAK ++G++ ++A AREAAR+AR+++R++ ++ LPGKLA+CQE+DPA SEL+LV Sbjct: 2 NPKDAKTIIGRMAESAIAREAARKARDLSRKQIGNQISTLPGKLANCQEKDPAKSELFLV 61 Query: 424 EGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEY 483 EGDSAGGSAKQGR+RK QAILPLKGKILNVE+ARFDKML+S E+ TLITALG + E+ Sbjct: 62 EGDSAGGSAKQGRDRKIQAILPLKGKILNVERARFDKMLNSAEIGTLITALGVVLEDKEF 121 Query: 484 NPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQE 543 + KLRYH IIIMTDADVDG+HIRTLLLTFF+R MP ++E+G++YIAQPPLYKVK+G+ + Sbjct: 122 DLTKLRYHKIIIMTDADVDGAHIRTLLLTFFFRYMPGLIEKGYLYIAQPPLYKVKRGQSD 181 Query: 544 QYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPK 603 Y+KD+ A+ Y SI L T+ S + + + L++ ++ + P Sbjct: 182 TYLKDELALRNYLKSIILKNCTVKI--SGREIDEDKTKALLNTLIRFSNIVKNYTNQVPA 239 Query: 604 AMLKELIY 611 +++EL++ Sbjct: 240 YIIEELLF 247 >UniRef50_A6TSS9 DNA gyrase, subunit B domain protein n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TSS9_ALKMQ Length = 680 Score = 277 bits (709), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 181/560 (32%), Positives = 288/560 (51%), Gaps = 35/560 (6%) Query: 5 YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIH 64 Y + SI L ++ VR RP + G +D TG H V E V N++DEA G K I V Sbjct: 9 YGNESISSLTEIEKVRLRPQVIFG-SDGITGSRHTVDETVANSVDEAKEGFGKLIKVKRF 67 Query: 65 ADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNS---YKVSGGLHGVGVS 121 D S+SVQD RGIP + +E E++ L+AGGK++ NS Y+ S GL+G+G + Sbjct: 68 KDRSISVQDFARGIPVEFNSKENKYNWELVFCTLYAGGKYNTNSGESYEYSKGLNGLGTT 127 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPL-AVTGETEKTGTMVRFWPSLETFTNVT 180 S+ ++++++R+G + +E G L + E TGT + + P L+ FT++ Sbjct: 128 ATQFASEYMDVLVRRDGYEYTLRFEKGENIGGLQKKKCDYESTGTTITWKPDLDVFTDIN 187 Query: 181 ---EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIH 237 EF E+L ++ + +N G++ L D+ + ++YE GI ++E +N K Sbjct: 188 IPLEFYQELLKRQ----AIVNKGITFELYDEASEENFTYYYEKGIVDYIEEINGGKEL-- 241 Query: 238 PNIFYFSTEKDG----------IGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRA 287 ++ Y E G + EVA +N+ +I + N+ GG ++ Sbjct: 242 SSVQYIELETKGRDRADKPEYKVKAEVAFAFNN-HASHIEYYHNSSYLEYGGAPDKAVKS 300 Query: 288 AMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKS 347 A + Y+ KK + A D + L+ + + F +QTK + + ++S Sbjct: 301 AFLSAIEQYLKNNNLYKKDEKRAIFADIEDSLVLISNSYSTLTSFENQTKRAISNVFIQS 360 Query: 348 AVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRK--GALDLAGLPG 405 A+ + E L Y +EN +A + +II R+RE+A + R ++K + A Sbjct: 361 ALTDFLKEKLQIYFIENKVEADKIANQIIINKRSRESAEKTRINVKKKLESPSNFANKVA 420 Query: 406 KLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQ 465 K DC+ +D + ELY+VEGDSA GS KQGR+ + QAI+P++GKILN KA+ D + + Sbjct: 421 KFVDCKTKDKSKRELYIVEGDSAMGSTKQGRDSEFQAIMPVRGKILNCLKAKLDNIFNDS 480 Query: 466 EVATLITALGCGIGRDEYNP--------DKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQ 517 + L+ L CGI N DKL + +II TDADVDG IRTL+L YR Sbjct: 481 VIVDLLKVLSCGIEIKSKNNTDLYTFELDKLNWDKVIICTDADVDGYQIRTLILAMLYRL 540 Query: 518 MPEIVERGHVYIAQPPLYKV 537 +P ++ G VYIA+ PL+++ Sbjct: 541 VPTLLREGKVYIAETPLFEI 560 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 37/96 (38%), Positives = 64/96 (66%), Gaps = 2/96 (2%) Query: 705 AFIE-RGERRQPVASF-EQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRM 762 F+E +G++ + + +Q D++V + + +IQR KGLGE PE +W+TTM+P++R++ Sbjct: 577 TFVENKGDKNYSIFVYSDQQRDFVVSKLKGKYAIQRSKGLGENEPEMMWQTTMNPQTRKL 636 Query: 763 LRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALK 798 ++VT+ DA AD +F L+G+ +E R+ I EN K Sbjct: 637 IQVTMSDAQKADDVFDLLLGNNLEGRKVHIAENGHK 672 >UniRef50_A5K8Q8 DNA gyrase subunit b, putative n=1 Tax=Plasmodium vivax RepID=A5K8Q8_PLAVI Length = 936 Score = 276 bits (706), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 185/546 (33%), Positives = 271/546 (49%), Gaps = 87/546 (15%) Query: 109 YKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAV-TGETEKTGTMV 167 Y+ S GLHGVG+SV NALS +++ + R GKIH E G PL+V K GT + Sbjct: 228 YRFSSGLHGVGLSVANALSSFMKVKVFRRGKIHSIELEKGKVVTPLSVRDCPVSKRGTQI 287 Query: 168 RFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------------- 213 + P F N E++ R+ +L++LN +S D+R K+ Sbjct: 288 HYRPDPTIFKNTIRHNAEMIRNRIHQLAYLNDRLSFYFYDERAAKKAAAEAENAANAADL 347 Query: 214 ----DH-----------------FHYEGGIKAFVEYLNKNKTPIHPN---IFYFSTEKDG 249 DH +EGG+ ++E L KNK + + + + Sbjct: 348 ADVADHAGNTAEHNNLDFYPYEVIKHEGGLDEYMESLTKNKASLFKDSNKVISITCHHKN 407 Query: 250 IGVEVALQWNDG-FQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKV 308 + +++ L+W G + E+I F NN+ DGGTH+ + A++R +N + K+ + + V Sbjct: 408 VHIDLRLKWTQGEYHEHIISFVNNVNTTDGGTHVDAMKYAISRCVN-FNIKKNEATRNFV 466 Query: 309 SATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDA 368 + G+ REG+ A++S+K+ +P+F QTK KL S +K +E + E L+E P Sbjct: 467 NIPGEYIREGMTAILSIKMNNPEFEGQTKTKLGSHFLKPILESAIFEKLSEIFDFEPNLL 526 Query: 369 KIVVGKIIDAARAREAARRAREMTRRKGALDLAG-LPGKLADCQERDPALSELYLVEGDS 427 + K + A + E A+ AR++ R K A LPGKL DC D +E+++VEGDS Sbjct: 527 NTIYLKALQAKASDEEAKAARDLIRSKNNQCYATILPGKLVDCISDDINRNEIFIVEGDS 586 Query: 428 AGGSAKQGRNRKNQAILPLKGKILNVEKARFDK-MLSSQEVATLITALGCGI-------- 478 A GSAKQ RNR+ QAILPLKGKILNVEK + +K + + E+ +LITA+G + Sbjct: 587 AAGSAKQARNREIQAILPLKGKILNVEKIKNNKRIFENSELKSLITAIGLSVSCENSKIA 646 Query: 479 ---------------------GRDEY------------NP---DKLRYHSIIIMTDADVD 502 G+ E NP LRY IIIMTDADVD Sbjct: 647 KGKSTINSKKKDLKKKYDLRSGKKENAQVNNALVSKKKNPLFDTPLRYGKIIIMTDADVD 706 Query: 503 GSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALD 562 G HIR LLLTF YR I++ G+V++A PPLYKV + + M Q+ +S Sbjct: 707 GEHIRILLLTFLYRFQKNIIQNGNVFVACPPLYKVTYNRFFDATIKETVMKQFNVSTKNS 766 Query: 563 GATLHT 568 +HT Sbjct: 767 KTLIHT 772 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 59/122 (48%), Positives = 84/122 (68%), Gaps = 3/122 (2%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 N YD+ I +L+GL+AVRKRPGMYIG+TD GLH ++FE++DN++DE C EI + Sbjct: 50 CNDYDAKDIVILEGLEAVRKRPGMYIGNTD-VKGLHQILFEIIDNSVDEYNNFECNEIKI 108 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKF--DDNSYKVSGGLHGVG 119 IH D SV+++D+GRGIP +H + SA E ++TVLH+G KF D+ ++ GG G Sbjct: 109 VIHQDESVTIEDNGRGIPCDVHEKTKKSALETVLTVLHSGAKFVDDEADAQLEGGSSVGG 168 Query: 120 VS 121 +S Sbjct: 169 LS 170 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 34/61 (55%), Positives = 47/61 (77%) Query: 736 IQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEEN 795 IQR+KGLGEM +QLW TTMDP R+++RVTV DA+ A+ L +LMG+ + R++FI EN Sbjct: 872 IQRFKGLGEMMADQLWSTTMDPRVRKLIRVTVSDAMRANNLIFSLMGEDSKLRKSFILEN 931 Query: 796 A 796 + Sbjct: 932 S 932 >UniRef50_A8S818 Putative uncharacterized protein n=6 Tax=Bacteria RepID=A8S818_9FIRM Length = 699 Score = 276 bits (706), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 181/570 (31%), Positives = 299/570 (52%), Gaps = 49/570 (8%) Query: 5 YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIH 64 Y + SI LKG D VRKRP + G +D G H +FE+V N+IDEA GH I VT Sbjct: 43 YGNESITSLKGADRVRKRPAVIFG-SDGVEGCAHSIFEIVSNSIDEARDGHGDTINVTRC 101 Query: 65 ADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDD--NSYKVSGGLHGVGVSV 122 D SV V+D GRG+P + EG E++ ++AGGK+ + ++Y+ S GL+G+G+ Sbjct: 102 KDGSVIVEDFGRGMPVDWNNGEGRFNWELLFCEMYAGGKYGEGEDNYEFSLGLNGLGLCA 161 Query: 123 VNALSQKLELVIQREGKIHRQIYEHG-----VPQAPLAVTGETEKTGTMVRFWPSLETFT 177 S + I R+G + ++ G + + P + +TG+++ + P E FT Sbjct: 162 TQYASAWMTADIYRDGYHYHLDFKKGENVGGLQKEPY----KGRRTGSIIHWKPDDEVFT 217 Query: 178 NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRD-----GKEDH--FHYEGGIKAFVEYL- 229 ++ + LR + +N+G+++ D+++ GK H + Y+ GI +V + Sbjct: 218 DI-DVPGSYYKDVLRRQAVVNAGLTLNFTDEKEKDPATGKPWHESWCYQNGIADYVAEVA 276 Query: 230 -NKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENI-YCFTNNIPQRD---------- 277 TP+ FS E + +G + Q + + + +CF+N + + Sbjct: 277 GEDTLTPV------FSCESEAVGRDREDQPDYKVRMSAAFCFSNKVQLLEYYHNSSWLEH 330 Query: 278 GGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTK 337 GG+ R A +N Y+ ++ KK + + + D ++ L+ V S + +QTK Sbjct: 331 GGSPEHAVRTAFVYQINKYLKEKNLYKKGESTISFQDVQDCLVYVSSSFSTRTSYENQTK 390 Query: 338 DKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRR--K 395 + + V A+ + L Y LE P +A+ + +++ ++RE A + R+ ++ Sbjct: 391 KAITNKFVSQAMTDFLKHYLEVYFLEKPEEAQKICQQVLVNKQSREHAEKTRQSIKKTLS 450 Query: 396 GALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 455 +DLA K DC+ RD A ELY+VEGDSA G+ K R+ + QAI+P++GKILN K Sbjct: 451 TQIDLANRVQKFVDCRTRDSARRELYIVEGDSAMGAVKSSRDSEYQAIMPIRGKILNCLK 510 Query: 456 ARFDKMLSSQEVATLITALGCGI---GRDE-----YNPDKLRYHSIIIMTDADVDGSHIR 507 A + ++ S + LI +GCG+ G+ +N D LR++ I+I TDADVDG IR Sbjct: 511 ADYARIFKSDVIVDLIKVMGCGVELGGKHNKELATFNLDNLRFNKIVICTDADVDGYQIR 570 Query: 508 TLLLTFFYRQMPEIVERGHVYIAQPPLYKV 537 TL+LT YR P ++ +G+VYIA+ PLY++ Sbjct: 571 TLVLTMLYRLTPTLINKGYVYIAESPLYEI 600 Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 46/72 (63%) Query: 725 WLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDA 784 +L K + +IQR KGLGE +PE +W TTM+PESRR+++V D + Q+F L+GD Sbjct: 618 FLQKIGDKKYTIQRSKGLGENDPEMMWLTTMNPESRRLIKVMPTDVVQTAQVFDILLGDN 677 Query: 785 VEPRRAFIEENA 796 + R+ I ++ Sbjct: 678 LAGRKEHIAQHG 689 >UniRef50_A3DC64 DNA topoisomerase (ATP-hydrolyzing) n=11 Tax=Bacteria RepID=A3DC64_CLOTH Length = 661 Score = 276 bits (705), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 174/558 (31%), Positives = 295/558 (52%), Gaps = 29/558 (5%) Query: 5 YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIH 64 Y ++SIK LKG + VR RP + G +D G H FE++ N+IDEA G K I VT Sbjct: 12 YGNTSIKSLKGAERVRLRPAVIFG-SDGIEGCQHSFFEILSNSIDEAREGFGKVIEVTRF 70 Query: 65 ADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNS---YKVSGGLHGVGVS 121 D S+ V+D GRGIP + E E++ L+AGGK+ +NS Y+ S GL+G+G Sbjct: 71 KDRSIMVKDYGRGIPLDYNENEKRYNWELVFCELYAGGKYKNNSGENYEFSLGLNGLGSC 130 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTG-ETEKTGTMVRFWPSLETFTNVT 180 S+ +++ + R+G + +E G L + E TGT++++ P LE FT++ Sbjct: 131 ATQYSSEYMDVTVFRDGMRYDLHFEKGENVGGLKKQKWDYESTGTIIKWRPDLEVFTDIN 190 Query: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNI 240 E + LR+ + +N+G+ L D+ + + YE GI +++ ++ +K +I Sbjct: 191 -IPLEYYTEVLRKQAVVNAGLKFILYDEESDRVFEYCYENGIVDYIKEVSGDKA--FTDI 247 Query: 241 FYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRD----------GGTHLAGFRAAMT 290 Y+ T G E ++ Q +CF N + + GG + A Sbjct: 248 QYYETSTRGRDREDKPEYKLKMQ-IAFCFNNEVNLLEYYHNSSFLEYGGAPDKAVKNAFV 306 Query: 291 RTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVE 350 ++ ++ +G K + T D ++ LI V + + +QTK + + ++ A+ Sbjct: 307 YVIDKFLKSQGKYNKDESRITFQDIQDSLILVSNSFSTITSYENQTKKSITNKFIQEAMT 366 Query: 351 QQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRK--GALDLAGLPGKLA 408 + + E L Y +EN + ++ +++ R+RE A + R ++K G +D++ K Sbjct: 367 EFLKEKLEVYFIENKVECTKILEQVLVNKRSRETAEKTRVNIKKKLSGNVDISNRVKKFV 426 Query: 409 DCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 468 DC+ +D E+Y+VEGDSA GS K R+ + QAI+P++GKILN KA +D + ++ + Sbjct: 427 DCRSKDVNKREIYIVEGDSALGSCKLARDAEFQAIIPVRGKILNCLKADYDSIFKNEIIV 486 Query: 469 TLITALGCGI------GRD--EYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPE 520 L+ LGCG+ R+ ++ + LR+ III TDADVDG IRTL+L YR +P Sbjct: 487 DLLKVLGCGVEIKSKHNRELSTFDLNNLRWSKIIICTDADVDGYQIRTLILAMLYRLVPT 546 Query: 521 IVERGHVYIAQPPLYKVK 538 +++ G V+IA+ PL++++ Sbjct: 547 LIQVGKVFIAESPLFEIR 564 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 67/117 (57%), Gaps = 1/117 (0%) Query: 687 YRRICTLGEKLRGLLEEDAFIE-RGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEM 745 YR + TL + + + E E R + + A ++ + +V + + +I R KGLGE Sbjct: 541 YRLVPTLIQVGKVFIAESPLFEIRTKDKTYFAYTDKEKNEIVSKLKGKYTILRSKGLGEN 600 Query: 746 NPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANI 802 +P+ +W+TTM+PE+RR+++V D ++ F +GD + R+++IEE+ K ++ Sbjct: 601 DPDMMWQTTMNPETRRLIQVVPDDIKKTEEFFDLFLGDNLPGRKSYIEEHGHKYLDM 657 >UniRef50_B0YNR7 DNA gyrase subunit B (Fragment) n=7 Tax=Gammaproteobacteria RepID=B0YNR7_9ENTR Length = 205 Score = 275 bits (703), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 124/205 (60%), Positives = 164/205 (80%) Query: 574 ALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNAL 633 AL+G +LEKLV ++ + QK +NRMERRYP+A+L ++IYQPTL E DL D + + W+ L Sbjct: 1 ALSGTSLEKLVHQHYSVQKTLNRMERRYPRALLNQMIYQPTLQEGDLKDSEKLQAWMTLL 60 Query: 634 VSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTL 693 V +LN+KE GS + F ++ N E +++P++++RTHGVDTDY LD FI EY++IC Sbjct: 61 VDKLNEKETQGSHYIFVLNKNTENEIYDPVLKIRTHGVDTDYLLDLHFIQSSEYQKICHW 120 Query: 694 GEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWET 753 G++LR LLE AF++RGE++ + SFE+ALDWL+KESRRGL+IQRYKGLGEMNP QLWET Sbjct: 121 GDQLRDLLEPGAFLQRGEKKTCINSFEEALDWLMKESRRGLAIQRYKGLGEMNPGQLWET 180 Query: 754 TMDPESRRMLRVTVKDAIAADQLFT 778 TMDPE+RRML+V +KDAIAADQLFT Sbjct: 181 TMDPETRRMLQVRIKDAIAADQLFT 205 >UniRef50_C0DAN0 Putative uncharacterized protein (Fragment) n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DAN0_9CLOT Length = 422 Score = 273 bits (698), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 153/407 (37%), Positives = 219/407 (53%), Gaps = 79/407 (19%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 + N Y + I++L+GL+AVRKRP MYIG+T GLHH+V E+VDNA+DEALAGHC + Sbjct: 18 VKNEYRAEQIQILEGLEAVRKRPAMYIGNTSSA-GLHHLVCEIVDNAVDEALAGHCSAVS 76 Query: 61 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 VT++ D SV++ D+GRGIP GI + G+SA +V+ TVLHAGGKFD ++YKVSGGLHGVG Sbjct: 77 VTLNRDGSVTITDNGRGIPVGIQKKTGLSALQVVFTVLHAGGKFDSSNYKVSGGLHGVGA 136 Query: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQA---------------------PLAVTGE 159 SVVNALS L + ++R+G +Q Y GVP P+ +T + Sbjct: 137 SVVNALSLWLRVEVRRDGGTWKQSYSRGVPDGAVTKEEAVRGCATGPLARQDDPIPLTRQ 196 Query: 160 TEK-----------------------TGTMVRFWPSLETFTNVTEFEYEILAKRLRELSF 196 + +GT V F P E F + F+YE+L KR+RE +F Sbjct: 197 DDPVPSARNEAPFSPARQGALDTVSVSGTTVTFLPDPEIFRDPV-FQYEVLKKRMRETAF 255 Query: 197 LNSGVSIRLRDKRD---------------------------------GKEDHFHYEGGIK 223 L G+S+ L D R ++DHF E G++ Sbjct: 256 LTKGLSLTLTDLRADCKHGSNTAATPDATTADAPKSPESSNLPQPTLPRQDHFLCEKGLE 315 Query: 224 AFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLA 283 FV +LN++ +P++ I + I VE A+Q G+ + +Y F NNI +GG+H+ Sbjct: 316 DFVNWLNRDASPLYSEIICGGADSGDIQVEFAIQHTAGYDQRLYSFVNNISTPEGGSHVT 375 Query: 284 GFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDP 330 GF +A+ R LN K++ ++ EGL AV+SV++ DP Sbjct: 376 GFHSALVRALNHCARNLKLLKESAPPLCREELTEGLTAVISVRMQDP 422 >UniRef50_Q1NK64 DNA topoisomerase II:ATP-binding region, ATPase-like n=3 Tax=Bacteria RepID=Q1NK64_9DELT Length = 614 Score = 272 bits (695), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 190/562 (33%), Positives = 295/562 (52%), Gaps = 61/562 (10%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGT----GLHHMVFEVVDNAIDEALAGHCK 57 S YD S IK L L+ +R RPGMYIG +G+ G++ ++ EV+DN +DE + G + Sbjct: 5 SAVYDESKIKTLSSLEHIRMRPGMYIGRLGNGSHPDDGIYILLKEVIDNGVDEFIMGAGR 64 Query: 58 EIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHG 117 I + + DN V+++D GRGIP G E ++V++ G K++ ++++ S GL+G Sbjct: 65 AIDIALADDNVVTIRDYGRGIPLGKLVE--------CVSVINTGAKYNTDAFQFSVGLNG 116 Query: 118 VGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGET----EKTGTMVRFWPSL 173 VG VNA+S + + R+G+ R + GV V E+ E GT+V F P Sbjct: 117 VGTKAVNAMSSRFVVTSFRDGEFARAKFARGV-----LVNEESGRSREPNGTLVEFRPDG 171 Query: 174 ETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNK 233 E F F + + +RL+ S+LN+G+++ DG + F+ E G+ + Sbjct: 172 EMFPEYA-FNRDFIRRRLKRYSYLNAGLTLNF----DG--ESFYSENGLLDLLASETSGT 224 Query: 234 TPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTL 293 + P + EK VE A DG+ E+ + F N +GGTHL+ FR + + + Sbjct: 225 SLYEP---IYHREKT---VEFAFSHTDGYGESYFSFVNGTYTAEGGTHLSAFREGLLKGV 278 Query: 294 NAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQM 353 N Y K+ G D REG++ V+VKV +P F SQTK+KL +++++ + + Sbjct: 279 NEYAGKK---------FDGADVREGVVGAVAVKVREPIFESQTKNKLGNADIRGEIVTAV 329 Query: 354 NELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQ-- 411 E ++ +L +N A++V+ KI +AR R+ + R+ + K +P +L DC+ Sbjct: 330 REAVSAFLYKNTDIAELVIDKIQQSARVRKELQHVRKEAKAKARKVALKIP-QLKDCKYH 388 Query: 412 ----ERDPALSE--LYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQ 465 + PA E ++L EG SA GS R+ QA+ LKGK LNV + + Sbjct: 389 PAPGKPSPAGRENMVFLTEGQSASGSIVSARDPMTQAVFSLKGKPLNVFGQPMALLYKND 448 Query: 466 EVATLITALGC--GIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVE 523 E+ ++ AL IGR LR+ III TDADVDG HIR LLLTFF +V+ Sbjct: 449 EMYNIMRALDVEESIGR-------LRFDKIIIATDADVDGLHIRNLLLTFFLHYFESLVK 501 Query: 524 RGHVYIAQPPLYKVKKGKQEQY 545 RGHVYI + P+Y+V+ +Q Y Sbjct: 502 RGHVYILETPIYRVRNKEQTFY 523 >UniRef50_Q59189 DNA topoisomerase 4 subunit B n=27 Tax=Bacteria RepID=PARE_BORBU Length = 599 Score = 263 bits (673), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 178/559 (31%), Positives = 291/559 (52%), Gaps = 47/559 (8%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGT----GLHHMVFEVVDNAIDEALAGHCK 57 + +YD S I L L+ +R R GMYIG DG+ G++ ++ E++DN+IDE + G+ Sbjct: 3 TQNYDESKIITLSSLEHIRLRSGMYIGRLGDGSNIDDGIYVLIKEIIDNSIDEFIMGYGN 62 Query: 58 EIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHG 117 EI + +N +S++D GRGIP G E ++V++ G K++D+ ++ S GL+G Sbjct: 63 EIFIK-KENNLISIRDYGRGIPLGKVIES--------VSVINTGAKYNDDVFQFSVGLNG 113 Query: 118 VGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFT 177 VG VNALS K + R GK ++ G + ++K GT V F E F Sbjct: 114 VGTKAVNALSSKFLVRSTRNGKSFEALFSKGKLLESREIKS-SDKDGTYVEFLADSEIFG 172 Query: 178 NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIH 237 + E + L +R + LN G+ I D+ F + G+ F+ K+ ++ Sbjct: 173 KYSYSE-DFLKRRFFHYACLNKGLIINYNDQ------IFESKNGLLDFLNSEIKSDDLLY 225 Query: 238 PNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYM 297 +I Y+S++ +E A + + E + F N DGGTH GFR R +N ++ Sbjct: 226 -DIVYYSSKT----LEFAFSHTNNYGETYFSFVNGQYTNDGGTHQTGFREGFVRAINDFL 280 Query: 298 DKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELL 357 K + + D REGL+A +SVK+ DP F SQTK+KL + E + V +++ +++ Sbjct: 281 KK---------TYSSTDIREGLVATLSVKIKDPIFESQTKNKLGNIETRGNVAKEVQKII 331 Query: 358 AEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQ------ 411 +E L ++ AK++ K++D R R+ R+ R + +P KL DC+ Sbjct: 332 SEILYKDKILAKLIEKKVVDNERLRKELSSVRKEARERAKKISFKIP-KLKDCKFHFNDS 390 Query: 412 ERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLI 471 + + ++L EGDSA GS R+ QAI L+GK N+ + ++ ++E+ ++ Sbjct: 391 SKQSEQTMIFLTEGDSATGSMVSCRDVYTQAIFSLRGKPQNMFEKNKSEIYKNEELYNMM 450 Query: 472 TALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQ 531 ALG E + + LRY+ ++I TDAD DG HIR LLLTFF +++ GH+YI + Sbjct: 451 VALGI-----EESIENLRYNKVVIATDADFDGFHIRNLLLTFFLTFFEDLILNGHMYILE 505 Query: 532 PPLYKVKKGKQEQYIKDDE 550 PL++V+ K Y +E Sbjct: 506 TPLFRVRNKKITTYCYSEE 524 >UniRef50_B1ZME3 DNA topoisomerase type IIA subunit B region 2 domain protein n=42 Tax=Bacteria RepID=B1ZME3_OPITP Length = 629 Score = 253 bits (646), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 180/568 (31%), Positives = 285/568 (50%), Gaps = 55/568 (9%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGT----GLHHMVFEVVDNAIDEALAGHC 56 M+ +Y +SIK L + +R RPGMYIG +G G++ ++ E +DN+IDE G+ Sbjct: 18 MAQAYTEASIKTLSSTEHIRLRPGMYIGRLGNGAHAEDGIYVLLKESIDNSIDEFTMGYG 77 Query: 57 KEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 116 ++I + + D V V+D GRGIP G E +++++ G K+D ++K + GL+ Sbjct: 78 RKIEIELQ-DRMVRVRDYGRGIPLGKVLE--------CVSIINTGAKYDSETFKKAVGLN 128 Query: 117 GVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETF 176 GVG VNALS R+G+ + G + + TE+ GT++ F P F Sbjct: 129 GVGQKAVNALSFSYRAQAFRDGQTKLVEFAQGKLRKDHKIAKTTERNGTLIEFTPDEALF 188 Query: 177 TNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPI 236 +F E + L +FLN G+++ K F E G+K ++ N + P+ Sbjct: 189 GKDFKFRPEFIEDMLWNYAFLNRGLTLTFNGK------AFRSENGLKDLLQK-NLSGEPL 241 Query: 237 HPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAY 296 +P I +G +EVA + E Y F N GGTHLA FR A+ T+ + Sbjct: 242 YPIIHL-----EGEDMEVAFTHGAHYGEEYYSFVNGQHTTMGGTHLAAFREALVETVRNF 296 Query: 297 MDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEV-------KSAV 349 ++ D R+ + A VSV+V +P F SQTK KL S+++ + + Sbjct: 297 FKRD---------YDAADVRQSIDAAVSVRVMEPVFESQTKTKLGSTDIAPGGPSIRDFI 347 Query: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPG-KLA 408 + + + L YL +N A + KI ++ R R+ R + R + A L KL Sbjct: 348 GKFVQQSLDGYLHKNRETADALRNKIEESERERKELAGIRSLARERAKK--ASLHNRKLR 405 Query: 409 DCQ----ERDPALSE--LYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 462 DC+ +R+ E L++VEGDSA GS R+ + QA+ LKGK LN + Sbjct: 406 DCRLHLGDRNERAEESTLFIVEGDSAAGSLTATRDVQTQAVFALKGKPLNTFGLSKKVIY 465 Query: 463 SSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIV 522 ++E L +AL E + D LRY+ ++I TDADVDG HIR LL++FF + P+++ Sbjct: 466 ENEEFHLLQSALNV-----EDSMDGLRYNRVVIATDADVDGMHIRLLLISFFLQFFPDLI 520 Query: 523 ERGHVYIAQPPLYKVKKGKQEQYIKDDE 550 GH++I + PL++V+ K+ Y +E Sbjct: 521 RNGHLFILETPLFRVRNKKETIYCYSEE 548 >UniRef50_B2RL68 DNA topoisomerase IV B subunit n=60 Tax=Bacteria RepID=B2RL68_PORG3 Length = 644 Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 183/560 (32%), Positives = 283/560 (50%), Gaps = 65/560 (11%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGT----GLHHMVFEVVDNAIDEALAGHC 56 + Y S IK L+ + +R+RPGMYIG DG+ G++ ++ EV+DN++DE + G Sbjct: 7 LQTEYIESDIKTLEWDEHIRRRPGMYIGKLGDGSHADDGIYVLLKEVLDNSVDEFVMGAG 66 Query: 57 KEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 116 K I +TI + +V+V+D GRGIP G + V A ++ GGK D ++K S GL+ Sbjct: 67 KSIDITIE-NGTVTVRDYGRGIPLG----KLVDAT----CKMNTGGKIDSKAFKKSVGLN 117 Query: 117 GVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETF 176 GVG+ VNALS + + + R+G+ R Y E +GT VRF P F Sbjct: 118 GVGIKAVNALSTEFVVTVWRDGQTKRVRYSRAELLEETDPVPSGEPSGTEVRFTPDDSLF 177 Query: 177 TNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEG----GIKAFVEYLNKN 232 N ++ E + ++ +FLN+G+S F Y G K + L +N Sbjct: 178 RNY-RYQEEFVVSMIKNYTFLNTGLS-------------FFYNGKKFLSRKGLEDLLAEN 223 Query: 233 KT--PIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMT 290 T ++P I T+ +E+ + + + Y F N GGTHL+ FR A+ Sbjct: 224 MTGDALYPIIHLSDTD-----IEIVVTHTQQYGDEFYSFVNGQNTTQGGTHLSAFREAVA 278 Query: 291 RTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSE------ 344 RT+ KE YSK + S D R G+ A +S+KV +P F SQTK KL S + Sbjct: 279 RTI-----KEFYSKNFEYS----DIRSGMAAAISIKVEEPVFESQTKTKLGSRDMGPDGP 329 Query: 345 -VKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREA----ARRAREMTRRKGALD 399 ++ V + + L +YL + A+ ++ KI + R R+A + ARE ++ + Sbjct: 330 TIQKFVGDFLKKELDDYLHIHTETAEEMLRKIQQSERERKAMSGITKLARERAKKSNLHN 389 Query: 400 --LAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 457 L L D + ++P + +++ EG+SA GS R+ QA+ L+GK LN Sbjct: 390 KKLRDCTVHLNDPKAKEPERTSIFITEGNSASGSITTCRDANYQAVFSLRGKPLNCFGLT 449 Query: 458 FDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQ 517 + ++E L AL E D LRY+ +II TDAD DG HIR L++TFF + Sbjct: 450 KKVVYENEEFNLLQAALNI-----EEGLDGLRYNRVIIATDADDDGMHIRLLIITFFLQF 504 Query: 518 MPEIVERGHVYIAQPPLYKV 537 P++V +GHVY+ + PL++V Sbjct: 505 FPDLVRKGHVYVLETPLFRV 524 >UniRef50_A6N697 DNA gyrase subunit B (Fragment) n=2 Tax=uncultured bacterium RepID=A6N697_9BACT Length = 440 Score = 245 bits (625), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 170/444 (38%), Positives = 246/444 (55%), Gaps = 29/444 (6%) Query: 92 EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQI-YEHGVP 150 EVIMTVLHAGGKFD Y SGGLHGVGVSVV AL+ +LE + RE + I YE G Sbjct: 1 EVIMTVLHAGGKFDGEVYDYSGGLHGVGVSVVCALASRLEAQVWRETEGSFTIAYEQGKL 60 Query: 151 QAPLA--VTGETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDK 208 PL + GT ++FWP E F + +++ + +R R ++L G+ + + D Sbjct: 61 VQPLRKRPGSKAHPHGTRIKFWPDPEIFGDAV-VDFDAVLERCRSKAYLIPGLRVDVIDH 119 Query: 209 R-DGKEDH-FHYEGGIKAFVEYLNKNKTPIHPNIF------YFSTEK----DGIG----- 251 R D H + G+ + +L N P+H I Y T + DGI Sbjct: 120 RLDPPVKHTYTSRNGLVDLLGHLANN--PLHKPIIIEGEGTYEETVQVLGDDGIRAQNME 177 Query: 252 ----VEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAK 307 +E+AL W G++ N + GGTHL G A++R + + K Sbjct: 178 RTGRLELALVWTGGYETQFQLAVNQVTTPRGGTHLTGLNQALSRVVVKAAEGSRVKKAKD 237 Query: 308 VSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENP-T 366 S DD EGL V+ +++P+P+F+ Q K++L + + V Q + LA++ P T Sbjct: 238 PSPNKDDVMEGLCLVMHLQIPEPQFNGQAKEELGTPQAHQLVYQIVARELAKWFETAPRT 297 Query: 367 DAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGD 426 ++V+ K++ AARAR+AARR+R+M R+K + LP KL+D P SEL +VEGD Sbjct: 298 HVRVVLEKVMAAARARDAARRSRDMARKKDRNQVLALPAKLSDSYRHYPEESELLIVEGD 357 Query: 427 SAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPD 486 SA G AK GR+++ QA+LP++GKILN +A + S+ EV + +ALG G + +P+ Sbjct: 358 SAAGPAKAGRDQRFQAVLPIRGKILNAARASAHNLASNAEVTAIFSALGLQPG-PKCDPE 416 Query: 487 KLRYHSIIIMTDADVDGSHIRTLL 510 + RY ++IMTDADVDGSHIRTLL Sbjct: 417 QRRYTRVVIMTDADVDGSHIRTLL 440 >UniRef50_C1SL26 DNA gyrase subunit B n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SL26_9BACT Length = 322 Score = 243 bits (621), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 140/343 (40%), Positives = 203/343 (59%), Gaps = 29/343 (8%) Query: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 +ITALG GIG+D++N +KLRYH IIIMTDADVDG+HI TL++TFF+R M EI+ERG++Y+ Sbjct: 1 MITALGTGIGKDDFNIEKLRYHKIIIMTDADVDGAHISTLIMTFFFRYMTEIIERGYLYM 60 Query: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATL-HTNASAPALAGEALEKLVSEYN 588 A PPLYKVKKGK E+YI+++E M Y + LDG + H P E LE L+ Sbjct: 61 ASPPLYKVKKGKSERYIQNEETMVNYLLDQGLDGVDIAHVQ---PHRYKELLENLIK--- 114 Query: 589 ATQKMINRMERR-YPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQW 647 +M+ + E++ Y + ++K L L + L D+ +V+ L++ + Sbjct: 115 -LNRMVTKFEKKGYSRKLVKLLASYDDLHFSKLEDKD----FVDGLLAAMQKYGILDQYV 169 Query: 648 KFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGL------L 701 ++ N E + + + +H V ++ + + E+R + LG L+ + L Sbjct: 170 TNEIEFNEEYGRYN--ISLASHSVTV--SINTDLLATPEFRELRRLGVYLKEIGDAPYKL 225 Query: 702 EEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRR 761 D I E SF + + ++GL +QRYKGLGEMNPEQLWETT+DP+SR Sbjct: 226 NVDGEITNFETLTEFVSFVE------QRGKKGLGVQRYKGLGEMNPEQLWETTVDPQSRT 279 Query: 762 MLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 + RV ++DA A++LF+ LMGD V PRR FIE NAL N+DI Sbjct: 280 LYRVRIEDAEMANELFSLLMGDVVAPRREFIENNALNVRNLDI 322 >UniRef50_D2QHC5 DNA topoisomerase type IIA subunit B region 2 domain protein n=6 Tax=Bacteroidetes RepID=D2QHC5_9SPHI Length = 632 Score = 242 bits (617), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 184/566 (32%), Positives = 279/566 (49%), Gaps = 67/566 (11%) Query: 5 YDSSSIKVLKGLDAVRKRPGMYIGDTDDGT----GLHHMVFEVVDNAIDEALAGHCKEII 60 Y+ SI+ L + +R RPGMYIG DG+ G++ ++ E +DN IDE + G K I Sbjct: 11 YNEDSIRSLDWREHIRLRPGMYIGKLGDGSAADDGIYVLIKETIDNCIDEHVMGFGKVIE 70 Query: 61 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 V + D+ V V+D GRGIP G EV+ + ++ GGK+D +++ S GL+GVG Sbjct: 71 VRV-TDHRVEVRDFGRGIPLG-------KVVEVV-SKINTGGKYDSGAFQKSVGLNGVGT 121 Query: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGE---TEKTGTMVRFWPSLETFT 177 VNALS + REGK ++ G L GE TE+ GT++ F P F Sbjct: 122 KAVNALSSYFRVQSFREGKTVWAEFDRG----ELKQRGEDATTERNGTLICFEPDDTVFK 177 Query: 178 NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIH 237 + F + L + +LN+G++I K+ + G + + K++ + Sbjct: 178 HF-HFIPQFLENMIWNYCYLNAGLTISF-----NKQKYLSQNGLLDLLRDKTKKDEDSLR 231 Query: 238 PNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYM 297 I + G +E+AL + + E Y F N GGTHL + A+ T+ + Sbjct: 232 YPIIHLK----GNDLEIALTHGNQYGEEYYSFVNGQYTTQGGTHLNALKEAVVETVRRHF 287 Query: 298 DKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSE---------VKSA 348 DK +VS D R +IA VS++V +P F SQTK KL S V S Sbjct: 288 DK-----NYEVS----DIRSSIIAAVSIRVQEPVFESQTKTKLGSQNMSPEPNAQSVSSF 338 Query: 349 VEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTR---RKGALDLAGLPG 405 V+ + E L ++L NP + + +I + R R+ +++ +K +L Sbjct: 339 VKDFVKERLDDFLHMNPAVREALKKRIEQSERERKELAGIKKLANDRAKKASLH----NK 394 Query: 406 KLADCQERDPAL-------SELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARF 458 KL DC+ P L S L++ EGDSA GS + RN ++QA+ L+GK LN Sbjct: 395 KLRDCRNHLPDLKADDRYQSTLFITEGDSASGSITKSRNVQSQAVFSLRGKPLNCFGLTK 454 Query: 459 DKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQM 518 + ++E L AL G + LRY+ I+I TDADVDG HIR L+LTFF + Sbjct: 455 KVVYENEEFNLLQHALDIEDGLE-----GLRYNRIVIATDADVDGMHIRLLMLTFFLQFF 509 Query: 519 PEIVERGHVYIAQPPLYKVKKGKQEQ 544 P++V GH+YI + PL++V+ K + Sbjct: 510 PDLVRNGHLYILETPLFRVRNPKNHK 535 >UniRef50_D2RAT5 DNA gyrase, B subunit, C-terminal domain protein n=10 Tax=Bifidobacteriaceae RepID=D2RAT5_GARVA Length = 792 Score = 242 bits (617), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 140/391 (35%), Positives = 220/391 (56%), Gaps = 38/391 (9%) Query: 195 SFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---- 250 S N+ + +++K + F + GG+K FV++L+K + +I+ S E + Sbjct: 316 SVANAQSANSMQNKHHPRVVEFLHNGGVKDFVDFLSKGEAV--SDIWRISGEDTYVEETQ 373 Query: 251 -----------------GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTL 293 GV++A++W +G+ I F N + GG H+ GF +T+ + Sbjct: 374 AVDSAGDLHAQQVTRKCGVDIAMRWVNGYDSTIISFVNVVETPGGGMHVDGFLQGLTKQI 433 Query: 294 NAYMDKEGYSKKAKVSATG-----DDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSA 348 ++ K + + DD GL+AVV+V++ +P+F QTKD L +++VK Sbjct: 434 RKAVEDNARKLKVNLKDSNTKIERDDITAGLVAVVTVRIAEPQFQGQTKDVLGTAQVKPI 493 Query: 349 VEQQMNELLAEYLLENPTDAK----IVVGKIIDAARAREAARRAREMTRRKGALDLAGLP 404 V + + E + + K V+ KI+ AR AR+ +E+TRRK AL+ A +P Sbjct: 494 VTKMTDAQFGEMITGSKRGFKEQSSRVLEKIVSEMHARIQARKTKEVTRRKNALESASMP 553 Query: 405 GKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 464 KL+DCQ + ++EL++VEGDSA G+AK RN QA+LP++GKILNV+KA +MLS+ Sbjct: 554 PKLSDCQPGNDDVAELFIVEGDSALGTAKAARNSAFQALLPIRGKILNVQKASLAQMLSN 613 Query: 465 QEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVER 524 +E A +I +G G G ++ + RY+ I++MTDADVDG+HIR LLLT FYR M ++E Sbjct: 614 KECAAIIQVVGAGSGA-SFDISQARYNKIVMMTDADVDGAHIRILLLTLFYRYMRPLIEH 672 Query: 525 GHVYIAQPPLYKV-----KKGKQEQYIKDDE 550 GHVY A PPL+++ +KG+ DDE Sbjct: 673 GHVYAAVPPLHRIALAGKRKGEYIYTYSDDE 703 Score = 205 bits (522), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 110/258 (42%), Positives = 149/258 (57%), Gaps = 35/258 (13%) Query: 5 YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIH 64 YD+ S+ VL+GLDAVRKRPGMYIG TD GL H ++E++DNA+DEALAG C IIVT+H Sbjct: 8 YDADSLTVLEGLDAVRKRPGMYIGTTD-SQGLMHCLWEIIDNAVDEALAGACDHIIVTLH 66 Query: 65 ADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN 124 D S+ V D+GRGIP + P+ ++ EV++T LHAG KF + SY +GGLHGVG SVVN Sbjct: 67 DDGSIEVADNGRGIPVDVEPKTKLTGVEVVLTKLHAGAKFGNASYNAAGGLHGVGSSVVN 126 Query: 125 ALSQKLELVIQREGKIHRQIY-------------EHGVPQAPLAVTGETEK--------- 162 ALS +L++ + R+GK H + EH P +P T + + Sbjct: 127 ALSLRLDVEVDRDGKTHHMAFHQGHPGVYSDADPEHPSPASPFKRTRKNKSTELEIIGTV 186 Query: 163 ----TGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHY 218 TGT VR+W E F + F YE L R+R+ SFL G+ I + D+ H Sbjct: 187 SPKTTGTRVRYWADPEIFNSTAHFSYEQLIARVRQTSFLVPGLKITVIDE--------HV 238 Query: 219 EGGIKAFVEYLNKNKTPI 236 G A +E ++ K + Sbjct: 239 PEGESANIEEIDSTKDDV 256 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 34/61 (55%), Positives = 46/61 (75%) Query: 736 IQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEEN 795 IQRYKGLGEM+ +QL +TTMDP +R + R+ ++DA A ++F LMGD V PR+ FI +N Sbjct: 722 IQRYKGLGEMDADQLADTTMDPRTRMLRRIRMEDAQQASEVFDLLMGDDVPPRKQFIVDN 781 Query: 796 A 796 A Sbjct: 782 A 782 >UniRef50_B6XTR9 Putative uncharacterized protein n=2 Tax=Bifidobacterium RepID=B6XTR9_9BIFI Length = 783 Score = 241 bits (614), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 135/370 (36%), Positives = 214/370 (57%), Gaps = 34/370 (9%) Query: 214 DHFHYEGGIKAFVEYLNKNKTP------IHPNIFYFSTEKDGIG-------------VEV 254 + F + GG++ FV+YL+K + + + T+ G G V++ Sbjct: 326 EEFCHTGGVRDFVDYLSKGEAVSDIWRVTGEDTYVEETQAVGDGGELHAQKVTRKCAVDI 385 Query: 255 ALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATG-- 312 A++W +G+ + F N + GGTH+ G+ MT+ + ++ K + + Sbjct: 386 AMRWTNGYDTTMRSFVNVVETPGGGTHVDGYLLGMTKQIRKAIEDNARKLKVNLKDSNMK 445 Query: 313 ---DDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAK 369 DD GL+AV++V++ +P+F QTKD L +++VK V + ++ E + + K Sbjct: 446 VERDDILSGLVAVITVRIAEPQFQGQTKDVLGTAQVKPIVSKMTDKQFGEMITGSKRGYK 505 Query: 370 ----IVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 425 V+ KI+ AR AR+ +E+TRRK AL+ A +P KL+DCQ + ++EL++VEG Sbjct: 506 EQSGRVLEKIVGEMHARIQARKTKEVTRRKNALESASMPPKLSDCQPGNDDVAELFIVEG 565 Query: 426 DSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNP 485 DSA G+AK RN QA+LP++GKILNV+KA +MLS++E A +I +G G G ++ Sbjct: 566 DSALGTAKAARNSGFQALLPIRGKILNVQKASLSQMLSNKECAAIIQVVGAGSGA-SFDI 624 Query: 486 DKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKV-----KKG 540 ++ RY+ +I+MTDADVDG+HIR LLLT FYR M ++E GHVY A PPL+++ +KG Sbjct: 625 EQARYNKVIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGHVYAAVPPLHRIALTGARKG 684 Query: 541 KQEQYIKDDE 550 + DDE Sbjct: 685 EYIYTYSDDE 694 Score = 208 bits (530), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 108/232 (46%), Positives = 146/232 (62%), Gaps = 27/232 (11%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 ++Y + S+ VL+GLDAVRKRPGMYIG TD GL H ++E++DN++DEALAG C IIVT Sbjct: 9 DNYGAGSLTVLEGLDAVRKRPGMYIGTTD-SQGLMHCLWEIIDNSVDEALAGVCNHIIVT 67 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 +H+D SV V D+GRGIP I P+ ++ EV++T LHAG KF ++SY SGGLHGVG SV Sbjct: 68 LHSDGSVEVADNGRGIPVDIEPKTKLTGVEVVLTKLHAGAKFGNSSYGASGGLHGVGSSV 127 Query: 123 VNALSQKLELVIQREGKIHRQIY-------------EHGVPQAP-----------LAVTG 158 VNALS +L++ + R+GK H + EH P AP L + G Sbjct: 128 VNALSSRLDVEVDRDGKTHHMSFHQGHPGVYTDVDSEHPSPDAPFKRTRKNRPTELEIIG 187 Query: 159 ET--EKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDK 208 + + TGT +R+W E F + EF YE L R+R+ SFL G+ I + D+ Sbjct: 188 KVSPKTTGTRIRYWADPEIFNDTAEFSYEQLIDRVRQTSFLVPGLKITVIDE 239 Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 36/61 (59%), Positives = 48/61 (78%) Query: 736 IQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEEN 795 IQRYKGLGEM+ +QL +TTMDP +R + R+ ++DA A ++F+ LMGD V PR+AFI EN Sbjct: 713 IQRYKGLGEMDADQLADTTMDPRTRMLRRIRMEDAEQASRIFSLLMGDDVPPRKAFIVEN 772 Query: 796 A 796 A Sbjct: 773 A 773 >UniRef50_B4V0A2 DNA gyrase subunit B n=1 Tax=Streptomyces sp. Mg1 RepID=B4V0A2_9ACTO Length = 387 Score = 238 bits (608), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 202/382 (52%), Gaps = 10/382 (2%) Query: 5 YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIH 64 YD+S I+VL+G +AVRKRPGMY+G T + GL MVFEV D A++E LAG + +T+ Sbjct: 8 YDASHIQVLEGWEAVRKRPGMYVGSTSE-RGLRQMVFEVADRAVNEVLAGRAASVDITLM 66 Query: 65 ADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN 124 D V V DDG G+P G E ++T + AG + V+ G GVG +VVN Sbjct: 67 PDGGVCVADDGPGVPIDETEGAGGPGLEALLTQMQAG-VGTGGRHDVTLGFCGVGPAVVN 125 Query: 125 ALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEY 184 ALS ++ ++REG + Q Y GV PL G +GT + FWP + F TEF + Sbjct: 126 ALSCRMTAEVRREGVLWVQEYARGVAATPLTEVGTATGSGTTIAFWPDADIF-GATEFSF 184 Query: 185 EILAKRLRELSFLNSGVSIRLRDKRDGKEDH---FHYEGGIKAFVEYLNKN---KTPIHP 238 + L +R RE++FLN G+ I L D R E + GG + V++L+ + TP+ Sbjct: 185 DGLEERFREVAFLNQGLEISLTDLRRPDESRSVRLRFPGGTRDLVDFLDGHAAASTPVDT 244 Query: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 F + G +EVA +W E + F N+ P GGTH GFR MT + AY Sbjct: 245 IAFECEDPRMGGVMEVAFRWCSCPGERVQSFANSRPTV-GGTHAVGFRDGMTAAVTAYAR 303 Query: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 ++G D EGL AVVSVK+ P+F T+ L +SEV+ V Q + + L Sbjct: 304 EQGLLTPMDPGFDADRIGEGLTAVVSVKLDRPEFEGSTRGVLGNSEVRDCVGQAVQDHLG 363 Query: 359 EYLLENPTDAKIVVGKIIDAAR 380 +L E+ A V+G+ + AR Sbjct: 364 RWLKEDRERAAAVIGQSVQGAR 385 >UniRef50_D2QB32 GyrB2 DNA gyrase subunit B n=8 Tax=Bifidobacterium RepID=D2QB32_9BIFI Length = 778 Score = 238 bits (606), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 137/370 (37%), Positives = 211/370 (57%), Gaps = 34/370 (9%) Query: 214 DHFHYEGGIKAFVEYLNKNKTP------IHPNIFYFSTEKDGIG-------------VEV 254 + F + GG+K FV++L+K + + + T+ G G V++ Sbjct: 321 EEFCHNGGVKDFVDFLSKGEAVSDIWRITGDDTYVEETQAVGEGGELHAQKVTRDCAVDI 380 Query: 255 ALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATG-- 312 A++W DG+ + F N + GG H+ GF +T+ + ++ K + + Sbjct: 381 AMRWTDGYDTTMRSFVNVVETPGGGMHVDGFLQGITKQIRKAVEDNARKLKVNLKDSNMK 440 Query: 313 ---DDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAK 369 DD GL+AVV+V++ +P+F QTKD L +++VK V + + E + + K Sbjct: 441 VERDDIMAGLVAVVTVRIAEPQFQGQTKDVLGTAQVKPIVTRMTDRQFGEMITGSKRGYK 500 Query: 370 ----IVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 425 V+ KI+ AR AR+ +E+TRRK AL+ A +P KL+DCQ + ++EL++VEG Sbjct: 501 EQSGRVLEKIVGEMHARIQARKTKEVTRRKNALESASMPPKLSDCQPGNDDVAELFIVEG 560 Query: 426 DSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNP 485 DSA G+AK RN QA+LP++GKILNV+KA +MLS++E A +I +G G G ++ Sbjct: 561 DSALGTAKAARNSGFQALLPIRGKILNVQKASLAQMLSNKECAAIIQVVGAGSGA-SFDI 619 Query: 486 DKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKV-----KKG 540 ++ RY+ II+MTDADVDG+HIR LLLT FYR M ++E GHVY A PPL+++ KG Sbjct: 620 EQARYNKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGHVYAAVPPLHRIALTGAHKG 679 Query: 541 KQEQYIKDDE 550 + DDE Sbjct: 680 EYIYTYSDDE 689 Score = 206 bits (523), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 105/232 (45%), Positives = 146/232 (62%), Gaps = 27/232 (11%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 ++Y + S+ VL+GLDAVRKRPGMYIG TD GL H ++E++DN++DEALAG C I+VT Sbjct: 4 DNYGAGSLTVLEGLDAVRKRPGMYIGTTD-SQGLMHCLWEIIDNSVDEALAGACNHIVVT 62 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 +H+D SV V D+GRGIP + P+ ++ EV++T LHAG KF ++SY SGGLHGVG SV Sbjct: 63 LHSDGSVEVADNGRGIPVDVEPKTKLTGVEVVLTKLHAGAKFGNSSYGASGGLHGVGSSV 122 Query: 123 VNALSQKLELVIQREGKIHRQIY-------------EHGVPQAP-----------LAVTG 158 VNALS +L++ + R+GK H + EH P +P L + G Sbjct: 123 VNALSSRLDVEVDRDGKTHHMSFHQGHPGVYADADPEHPSPDSPFKRTRKNRPTELEIIG 182 Query: 159 ET--EKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDK 208 + + TGT +R+W E F + EF YE L R+R+ SFL G+ I + D+ Sbjct: 183 KVSPKTTGTRIRYWADPEIFNDTAEFSYEQLIDRVRQTSFLVPGLKITVIDE 234 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 36/61 (59%), Positives = 49/61 (80%) Query: 736 IQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEEN 795 IQRYKGLGEM+ +QL +TTMDP +R + R+ ++DA A+++F+ LMGD V PR+AFI EN Sbjct: 708 IQRYKGLGEMDADQLADTTMDPRTRMLRRIRMEDAEQANEIFSLLMGDDVPPRKAFIVEN 767 Query: 796 A 796 A Sbjct: 768 A 768 >UniRef50_Q8I528 Term=DNA gyrase subunit B;evidence=inferred from direct assay n=3 Tax=Plasmodium RepID=Q8I528_PLAF7 Length = 1006 Score = 233 bits (594), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 147/402 (36%), Positives = 210/402 (52%), Gaps = 52/402 (12%) Query: 218 YEGGIKAFVEYLNKNKTPIHPN---IFYFSTEKDGIGVEVALQW-NDGFQENIYCFTNNI 273 +E G+ ++ + KNKT + + I S I +++ ++W ++ + ENI F NN+ Sbjct: 462 HEYGLNEYITNITKNKTNLFKDNDKIISISCYHKNIYIDLRMKWLSNQYNENIISFVNNV 521 Query: 274 PQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFS 333 DGGTH+ + A++R +N Y K+ K V+ G+ REGL A++SVK+ +P+F Sbjct: 522 NTTDGGTHVDALKYAVSRCVN-YNIKKNEMIKNFVNIPGEYIREGLTAILSVKMNNPEFE 580 Query: 334 SQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTR 393 QTK KL S +KS +E + E L+E P + K + A + E A+ AR++ R Sbjct: 581 GQTKTKLGSHHLKSILESVIFEKLSEIFDFEPNLLSSIYFKALQAKLSDEEAKAARDLIR 640 Query: 394 RKG-ALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILN 452 K LPGKL DC D + +E+++VEGDSA GSAKQ RNR+ QAILPLKGKILN Sbjct: 641 SKNNQYSSTILPGKLVDCISDDISRNEIFIVEGDSAAGSAKQARNREIQAILPLKGKILN 700 Query: 453 VEKARFDK-MLSSQEVATLITALGCGI--------------------------------- 478 VEK + +K + + E+ +LITALG + Sbjct: 701 VEKIKNNKRIFENSELKSLITALGLNVNYDNKNLKNNNILSNNKKGKNSKKKSDLKNSRF 760 Query: 479 ------------GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGH 526 +D + LRY +IIMTDADVDG HIR LLLTF YR EI+E G+ Sbjct: 761 ESTQNNNNILNKKKDILVDNTLRYGKVIIMTDADVDGEHIRILLLTFLYRFQKEIIENGN 820 Query: 527 VYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHT 568 VY+A PPLYK+ K D Q+ ++ +HT Sbjct: 821 VYVACPPLYKITYNKFFDNSIKDIVTKQFNVTTKQSKFIIHT 862 Score = 161 bits (408), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 90/271 (33%), Positives = 138/271 (50%), Gaps = 51/271 (18%) Query: 4 SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTI 63 +YD+ I +L+GL+AVRKRPGMYIG+TD GLH ++FE++DN++DE C I V I Sbjct: 122 NYDAKDIVILEGLEAVRKRPGMYIGNTD-VKGLHQILFEIIDNSVDEYNNFECNTIKVVI 180 Query: 64 HADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDN---------------- 107 H D+SV+++D+GRGIP +H + SA E ++TVLH+G KF D+ Sbjct: 181 HKDDSVTIEDNGRGIPCDVHEKTKKSALETVLTVLHSGAKFFDDEMDDEIDNNMNNTGNT 240 Query: 108 ---------------------------------SYKVSGGLHGVGVSVVNALSQKLELVI 134 YK S GLHGVG+SV NALS +++ + Sbjct: 241 NTSEKNNRDNISNNNNNNNNNKRTKKNSKESAQKYKYSSGLHGVGLSVANALSSFMKVKV 300 Query: 135 QREGKIHRQIYEHGVPQAPLAVTG-ETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRE 193 R KI+ E G L +T K GT + + P F + T+ +++ R+ + Sbjct: 301 FRNNKIYSIELEKGKVTKELTITNCPINKRGTQIHYKPDSSIFKSSTKHNSDLIKNRIHQ 360 Query: 194 LSFLNSGVSIRLRDKRDGKEDHFHYEGGIKA 224 L++LN ++ D+R ++ + G K+ Sbjct: 361 LAYLNEKLTFYFYDERSENKNSIYISKGNKS 391 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 35/61 (57%), Positives = 45/61 (73%) Query: 736 IQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEEN 795 IQR+KGLGEM +QLW TTMDP R+++RVTV DAI A+ L +LMG+ + R+ FI EN Sbjct: 941 IQRFKGLGEMMADQLWNTTMDPTVRKLIRVTVNDAIRANDLIFSLMGEDSKLRKNFILEN 1000 Query: 796 A 796 Sbjct: 1001 T 1001 >UniRef50_A7XYG8 GyrB (Fragment) n=6 Tax=Chlamydia trachomatis RepID=A7XYG8_CHLTR Length = 393 Score = 231 bits (589), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 113/202 (55%), Positives = 145/202 (71%) Query: 399 DLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARF 458 D A LPGKL DC E+DP E+Y+VEGDSAGGSAKQGR+R+ QAILP++GKILNVEKAR Sbjct: 1 DSARLPGKLIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARL 60 Query: 459 DKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQM 518 K+ +QE+ ++I ALGCGIG+D +N KLRY IIIMTDADVDGSHIRTLLLTFFYR M Sbjct: 61 QKVFQNQEIGSIIAALGCGIGKDNFNLSKLRYKRIIIMTDADVDGSHIRTLLLTFFYRHM 120 Query: 519 PEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGE 578 ++E VYIAQPPLY+V K K +YI ++ MD Y +++ + + + + L GE Sbjct: 121 SALIENECVYIAQPPLYRVSKKKDFRYILSEKEMDGYLLNLGTKESQIVFDDTLRDLRGE 180 Query: 579 ALEKLVSEYNATQKMINRMERR 600 ALE V+ + I +E++ Sbjct: 181 ALETFVNLILEVESFIVSLEKK 202 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 47/89 (52%), Positives = 68/89 (76%), Gaps = 2/89 (2%) Query: 718 SFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLF 777 + ++ +D+L R+G+ IQRYKGLGEMN +QLW+TTM+PE R ++RV++KDA+ AD +F Sbjct: 305 TLKEVIDYLKGLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSLKDAVEADHIF 364 Query: 778 TTLMGDAVEPRRAFIEENAL--KAANIDI 804 T LMG+ V PRR FI+ +AL + N+DI Sbjct: 365 TMLMGEEVPPRREFIKSHALSIRMNNLDI 393 >UniRef50_B1BBK7 DNA topoisomerase n=5 Tax=root RepID=B1BBK7_CLOBO Length = 1417 Score = 229 bits (585), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 166/575 (28%), Positives = 276/575 (48%), Gaps = 55/575 (9%) Query: 8 SSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADN 67 + +K LKG + VRKR + +G +DD G H +FE+V N+ID G I V H D Sbjct: 2 ADLKRLKGSERVRKRVSVMMG-SDDIRGCQHTLFEIVSNSIDRHRKGFGNYIKVIKHEDL 60 Query: 68 SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALS 127 S ++ D G+P + +E ++ + VL+AG +D NS + G++G+G+ S Sbjct: 61 SYTIIDHADGLPMDWNDKENAYNWDLALKVLYAGDNYDANS--TALGINGLGLCSSQYAS 118 Query: 128 QKLELVIQREGKIHRQIYEHGVP----------------------QAPLAVTGETE-KTG 164 + +E+V ++ K + + G P Q L V +E KTG Sbjct: 119 EYMEVVSYKDDKKYTVKCKKGRPIDKNTGEFICEDDDTLFAREQGQRVLLVESNSENKTG 178 Query: 165 TMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKA 224 T + + P LE FTN+ + + + +L + + +N + I + D+++ K +YE GIK Sbjct: 179 TYIHYKPDLEVFTNI-DISIDWINDKLDKQAMVNKELKIEVYDEKEDKLYTHYYESGIKD 237 Query: 225 FVEYLNKNKTPIHPNIFYFSTEKDG----------IGVEVALQWNDGFQENIYCFTNNIP 274 +++ ++ + ++ YF+ + G E+AL +N+ + Y + N+ Sbjct: 238 YIKTISDDNN--FSDVIYFTEKGKGRDKVDKPEYDYNYEIALVFNNEINKLEY-YHNSSE 294 Query: 275 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 334 GG+ A T +N Y K + D ++ LI V+S +++ Sbjct: 295 LLQGGSTADAINLAFTYAINEYAKDNNLFNKNESKIKFTDIQDSLICVISSFSTMTSYAN 354 Query: 335 QTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRR 394 QTK + + +K Q + E L Y +EN +A +V +I+ RA + A + + ++ Sbjct: 355 QTKLSIDNKFIKDFTNQSLKEKLKLYFIENKLEAGRIVNQILINKRANDKAEKTKLNIKK 414 Query: 395 ----KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKI 450 K D C D +++ELYL EG SA GS GRN K QA + GK+ Sbjct: 415 TLQTKSNFDDTD---NFYACTSNDKSITELYLAEGSSAQGSIVMGRNSKFQACYHVGGKM 471 Query: 451 LNVEKARFDKMLSSQEVATLITALGCGIG-RDEYNPD-------KLRYHSIIIMTDADVD 502 L++ KA F+K+ ++ V L LGCGI + ++N D L Y II+ TD D D Sbjct: 472 LSLLKADFEKIFKNKVVRELFQYLGCGIEIKSKHNKDLNTFDENNLNYSKIILATDQDTD 531 Query: 503 GSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKV 537 IR L+LT YR P +++ G+VYIA+ PLY++ Sbjct: 532 AFQIRCLMLTAIYRLAPTLIKHGYVYIAESPLYEI 566 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 3/79 (3%) Query: 720 EQALDWLVKESRRGLSI---QRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQL 776 E+ + L + S++G+ +R KGLGE++ + + ET M+P++R++ RVTV+D Sbjct: 579 EEKITILEELSKKGIKYDKPERNKGLGEVDSDIIAETMMNPKTRKITRVTVQDVEKMANT 638 Query: 777 FTTLMGDAVEPRRAFIEEN 795 F +GD V+PR+ I N Sbjct: 639 FELWLGDEVKPRKEVITSN 657 >UniRef50_C7PPD8 DNA topoisomerase type IIA subunit B region 2 domain protein n=23 Tax=Bacteria RepID=C7PPD8_CHIPD Length = 640 Score = 229 bits (583), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 184/577 (31%), Positives = 283/577 (49%), Gaps = 64/577 (11%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGT----GLHHMVFEVVDNAIDEALAGHC 56 +S +Y SI+ L + +R RPGMYIG DG+ G++ ++ EV DN IDE G Sbjct: 9 LSAAYTEDSIRSLDWREHIRLRPGMYIGKLGDGSSMDDGIYILLKEVADNCIDEHTMGFG 68 Query: 57 KEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 116 K+I + + +++V+++D GRGIP G +V+ + ++ G K+D +++ S GL+ Sbjct: 69 KQIDIRV-TEHNVTIRDYGRGIPLG-------KVVDVV-SKINTGAKYDSKAFQKSVGLN 119 Query: 117 GVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETF 176 GVG VNALS + REG+ +E G +E GT+V F P F Sbjct: 120 GVGTKAVNALSSYFRVESFREGRGKVAEFERGNLTKEHKEANTSEPNGTLVTFTPDDTVF 179 Query: 177 TNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPI 236 N F E L ++ FLN+G++I K+ + + G+ ++ Sbjct: 180 RNY-RFIPEFLENQIWNYCFLNAGLTISFNGKK------YISKNGLLDLLQRKTNEDELR 232 Query: 237 HPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAY 296 +P I G +EVA+ + + E Y F N GGTHLA FR A +TL + Sbjct: 233 YPIIHL-----KGEDIEVAITHENQYGEEYYSFVNGQHTTQGGTHLAAFREAFVKTLRDF 287 Query: 297 MDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEV-------KSAV 349 K+ AT D R + A +SV+V +P F SQTK KL S V K+ V Sbjct: 288 YKKD-------YEAT--DIRASICAAISVRVQEPVFESQTKTKLGSLTVFENGPSMKAFV 338 Query: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPG-KLA 408 +++ L ++L +NPT A+ + +I + R R+ +++ + A L KL Sbjct: 339 LDFLSKHLDDFLHKNPTTAEALKKRIEQSERERKELAGIKKLANERAKK--ANLHNRKLR 396 Query: 409 DCQ---------------ERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 453 DC+ E + +++ EGDSA GS + RN + QA+ L+GK LN Sbjct: 397 DCRIHLNEEVSGKDKNDLETKRLNTTIFITEGDSASGSITKSRNVETQAVFSLRGKPLNS 456 Query: 454 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTF 513 + ++E L AL E + LRY+ I++ TDADVDG HIR LLLTF Sbjct: 457 FGLTKKIVYENEEFNLLQHALNI-----EEGLEGLRYNRIVVATDADVDGMHIRLLLLTF 511 Query: 514 FYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDE 550 F + P++V+ GH+YI + PL++V+ +Q Y DE Sbjct: 512 FLQFFPDLVKNGHLYILETPLFRVRNKQQTIYCYTDE 548 >UniRef50_C9E3K9 DNA gyrase subunit B (Fragment) n=1 Tax=Rhodococcus sp. BX2 RepID=C9E3K9_9NOCA Length = 352 Score = 221 bits (563), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 120/307 (39%), Positives = 175/307 (57%), Gaps = 36/307 (11%) Query: 156 VTGE-TEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKED 214 V GE T++TGT VRFWP E F T F +E +A+RL+E++FLN G++I L D+ E+ Sbjct: 29 VKGEPTKRTGTTVRFWPDPEIF-ETTTFNFETVARRLQEMAFLNKGLTITLTDEGVAPEE 87 Query: 215 ----------------------------------HFHYEGGIKAFVEYLNKNKTPIHPNI 240 +HY GG++ +V ++N+ K+PIH ++ Sbjct: 88 VTDEDVPETAEAPKTAEDEAVEAAEPEVHKVKVRTYHYPGGLEDYVRHINRTKSPIHNSV 147 Query: 241 FYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKE 300 F+ + G +EVA+QWN G+ E+++ F N I +GGTH GFRAA+T +N Y + Sbjct: 148 VGFTAKGTGHELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNRYAKDK 207 Query: 301 GYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEY 360 K + TGDD REGL A++SVKV +P+F QTK KL ++EVKS V++ NE ++ + Sbjct: 208 KLLKDKDPNLTGDDIREGLAAIISVKVAEPQFEGQTKTKLGNTEVKSFVQKACNEHISHW 267 Query: 361 LLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSEL 420 NP DAK +V K + +A AR AAR+ARE+ RRK A + GKL +DP+ + Sbjct: 268 FEANPADAKTIVTKAVSSAHARVAARKARELVRRKSATEHRWSAGKLRRLPSKDPSSARS 327 Query: 421 YLVEGDS 427 GDS Sbjct: 328 TSWRGDS 334 >UniRef50_B5H7D6 DNA gyrase subunit B n=2 Tax=Streptomyces RepID=B5H7D6_STRPR Length = 391 Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 136/383 (35%), Positives = 201/383 (52%), Gaps = 17/383 (4%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 ++ YD++ I+VL+GL+ VRKRPGM++G T + GLH MVFEVV A++E +AG + V Sbjct: 5 AHMYDATHIEVLEGLEVVRKRPGMWVGSTGE-RGLHQMVFEVVGRAVNENVAGRAGSVAV 63 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHA----GGKFDDNSYKVSGGLHG 117 + D V V DDG G+P E E ++T +HA GG+ + VS +G Sbjct: 64 ALMPDGEVRVTDDGPGVPAEAVGEAVGPCLEDMLTRIHAQQDAGGR---RAIAVSPLGNG 120 Query: 118 VGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFT 177 +G+ V NAL+ L ++R+G Q+Y GV P G +G + F P F Sbjct: 121 LGLGVPNALASSLTAEVRRDGVRWVQVYASGVAVGPPTAAGPAVGSGITLAFRPDAGIFE 180 Query: 178 NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE---DHFHYEGGIKAFVEYLNKNKT 234 V E +++LA+R REL+FLN G+ I L D+R E + FH GG + FV L + + Sbjct: 181 TV-ECSFDVLAERFRELAFLNRGLDISLSDERSAGECRSERFHSPGGTRDFVLLLGEGRG 239 Query: 235 P---IHPNIFYFSTEKDGIG--VEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 + ++ F E + VEVALQW D +E + + N+ P +GGTH GFR + Sbjct: 240 TGALVQTDVIGFEREDPRMAGAVEVALQWRDSDEERVRTYANSRPTPEGGTHAEGFRDGV 299 Query: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 +NAY + A D +GL AVVSVK+ P F T +L ++E + V Sbjct: 300 AAAVNAYARQRRLLTSADADLGADRIGKGLTAVVSVKLDQPGFRGATCAELDNTEARFGV 359 Query: 350 EQQMNELLAEYLLENPTDAKIVV 372 E+ + E L +L +P A V+ Sbjct: 360 EEAVREHLGIWLERHPEQAAAVI 382 >UniRef50_A6N6C7 DNA gyrase subunit B (Fragment) n=1 Tax=uncultured bacterium RepID=A6N6C7_9BACT Length = 353 Score = 209 bits (531), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 144/333 (43%), Positives = 194/333 (58%), Gaps = 34/333 (10%) Query: 92 EVIMTVLHAGGKFDDNSYKVSGGLHGV-GVSVVNALSQKLELVIQ---REGKIHRQIYEH 147 EVIMTVLHAGGKF + LH G +V + ++ + Q R G + Sbjct: 1 EVIMTVLHAGGKFG----RALNLLHPPQGADIVVSGDRRFDTTPQGGQRRGYLPVVDVGE 56 Query: 148 GVPQ-APLAVTGETEKTGT--MVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIR 204 PQ APL G + G + P ++ R+ + S VS R Sbjct: 57 YCPQGAPLVQHGVCDVVGDVHLCVQLPKRGSYDQCNP----------RKEPYRESCVSER 106 Query: 205 LRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQE 264 D+ + F + EYL++ +T +HP +F+ EKDGI VEVA+QW + +QE Sbjct: 107 RIDR---AREQF-----TRTCPEYLHRTRTVLHPTVFHSVGEKDGITVEVAMQWKESYQE 158 Query: 265 NIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVS 324 N+ CFTNNIPQRDGGTHL RAAM RTLN ++++ ++KAKV TG+D REG V+S Sbjct: 159 NVLCFTNNIPQRDGGTHLTALRAAMPRTLNHFIEENELARKAKVETTGEDMREGRTCVLS 218 Query: 325 VKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREA 384 VKVP PKFSSQTK+KLVSSEV+ AVE+ +++ + +LLE P +A+I+VGKII+AARAREA Sbjct: 219 VKVPPPKFSSQTKEKLVSSEVRPAVEEVVSDQMRSFLLEKPAEARIIVGKIIEAARAREA 278 Query: 385 ARRAREM-TRRKGALDLAG----LPGKLADCQE 412 ARR R + RR+G L G K+A C+E Sbjct: 279 ARRGRSLPVRRRGETSLRGSLRSPKSKVAPCRE 311 >UniRef50_UPI0001698B4B DNA gyrase, B subunit n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001698B4B Length = 199 Score = 205 bits (521), Expect = 7e-51, Method: Composition-based stats. Identities = 101/157 (64%), Positives = 125/157 (79%), Gaps = 1/157 (0%) Query: 187 LAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTE 246 LAKRLRELSFLNSG I LR++ GKED F Y+GGI AFVE+LN+NKTPIH +F+FST+ Sbjct: 39 LAKRLRELSFLNSGARIILREESSGKEDVFEYKGGILAFVEHLNRNKTPIHKKVFHFSTD 98 Query: 247 KDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKA 306 K+ +GVEVALQWN+ +QENI+C+TNNIPQRDGG+HLAGFRAA+TRTLN Y++KEG KK Sbjct: 99 KNDVGVEVALQWNESYQENIFCYTNNIPQRDGGSHLAGFRAALTRTLNQYIEKEGVLKKH 158 Query: 307 KVSATGDDAREGLIA-VVSVKVPDPKFSSQTKDKLVS 342 KV+ +GDDA+ L + +K F + KDKLVS Sbjct: 159 KVNTSGDDAKGRLDSQFYQLKCLIQSFHLRRKDKLVS 195 >UniRef50_C0F8C8 DNA gyrase, B subunit (Fragment) n=1 Tax=Wolbachia endosymbiont of Muscidifurax uniraptor RepID=C0F8C8_9RICK Length = 288 Score = 203 bits (516), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 111/292 (38%), Positives = 170/292 (58%), Gaps = 18/292 (6%) Query: 427 SAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPD 486 SAGG+AKQGRNRK QA+L L+GKILNVE+ D++ SS E+ +LITA+G GIG + ++ + Sbjct: 1 SAGGTAKQGRNRKTQAVLALRGKILNVERVSLDRIFSSAEIGSLITAIGAGIGSEHFDIE 60 Query: 487 KLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYI 546 K RYH IIIMTDADVDGSHIRTL+LTFF+R M E++E+G++YIAQPPLYKV K ++ YI Sbjct: 61 KARYHKIIIMTDADVDGSHIRTLILTFFFRHMREVIEKGYLYIAQPPLYKVTKNAKDTYI 120 Query: 547 KDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAML 606 KDDE ++Y I+ A+ TL + A+ L K V N ++ +R P+ +L Sbjct: 121 KDDETFEEYIINSAVKRLTLSSTATEFNDLRLILNKCVGISNISK----NYDREIPQNLL 176 Query: 607 KELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRV 666 + L+ +DE + +++ + SE W+ ++ ++ + + Sbjct: 177 ESLLILSKKNALSSADE--ILKYLKLMYSEYT--------WEVEIKDEEKEIHISKLFQ- 225 Query: 667 RTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718 G+ Y + G + + I +L + + L D+F++ E + S Sbjct: 226 ---GLADKYIFALSMLEGKDMQNILSLLDGISNLFNGDSFLKSQETEIRITS 274 >UniRef50_A9CRV4 DNA gyrase subunit B (Fragment) n=2 Tax=Bradyrhizobium RepID=A9CRV4_9BRAD Length = 272 Score = 202 bits (513), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 110/168 (65%), Positives = 124/168 (73%), Gaps = 2/168 (1%) Query: 41 FEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHA 100 +EVVDNAIDEALAGH ++VT++ADNSV+V DDGRGIP IH EGVSAAEVIMT LHA Sbjct: 1 YEVVDNAIDEALAGHASRVLVTLNADNSVTVYDDGRGIPVDIHKGEGVSAAEVIMTQLHA 60 Query: 101 GGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGET 160 GGKFD NSYKVSGGLHGVGVSVVNALS KL L I + K H + HG APL V G+ Sbjct: 61 GGKFDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWGDDKEHYIEFAHGDAVAPLKVVGDA 120 Query: 161 E-KTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRD 207 K GT V F S ETF N+ E+++ L RLREL+FLNSGV I L D Sbjct: 121 PGKRGTEVTFLASPETFKNI-EYDFATLEHRLRELAFLNSGVHIVLSD 167 >UniRef50_Q44273 DNA gyrase subunit B (Fragments) n=5 Tax=Acinetobacter RepID=GYRB_ACIGA Length = 216 Score = 193 bits (490), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 91/100 (91%), Positives = 96/100 (96%) Query: 395 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 454 K ALD+AGLPGKLADCQE+DPALSELYLVEGDSAGGSAKQGRNRK QAILPLKGKILNVE Sbjct: 117 KSALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVE 176 Query: 455 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSII 494 +ARFDKM+SSQEV TLITALGCGIGR+EYNPDKLRYH II Sbjct: 177 RARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKII 216 Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 76/115 (66%), Positives = 85/115 (73%), Gaps = 1/115 (0%) Query: 108 SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMV 167 SYKVSGGLHGVGVSVVNALS KLEL I R G IH+Q Y+HG P PL V G+ E TGT V Sbjct: 1 SYKVSGGLHGVGVSVVNALSSKLELTIHRAGHIHQQEYKHGDPVYPLKVIGDIETTGTTV 60 Query: 168 RFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGI 222 RFWPS ETF+ T F +ILA+RLRELSFLN+GV I LRD+R E F E G+ Sbjct: 61 RFWPSAETFSQ-TIFNVDILARRLRELSFLNAGVRIVLRDERVALEHIFDLEVGL 114 >UniRef50_B4YQA0 DNA gyrase subunit B (Fragment) n=1 Tax=Lactobacillus jensenii RepID=B4YQA0_9LACO Length = 258 Score = 188 bits (478), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 99/258 (38%), Positives = 158/258 (61%), Gaps = 4/258 (1%) Query: 132 LVIQREGKIHRQIYEHGVPQAPLAVTGETEKT--GTMVRFWPSLETFTNVTEFEYEILAK 189 + + R+GK + ++HG + L G + + GT+V F+P + FT F+ +IL K Sbjct: 1 VTVMRDGKKYFIDFDHGRVKHELKEIGTVDPSQHGTIVHFYPDPDIFTETIVFDDKILKK 60 Query: 190 RLRELSFLNSGVSIRLRDKR--DGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEK 247 R++EL+FLN G+ + DKR + D +HYEGGIK +V +L++ + + Y + Sbjct: 61 RIQELAFLNKGLKLTFTDKRKNSAETDVYHYEGGIKEYVAFLDEKEEKLFDTPVYVEGDY 120 Query: 248 DGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAK 307 DGI VEVALQ+ G++ + F NNI +GG H AGF+ A+TR +N Y K K + Sbjct: 121 DGINVEVALQYTTGYKTTMMTFANNIHTYEGGMHEAGFKTALTRVINDYARKAKIFKDSD 180 Query: 308 VSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTD 367 + +G+D REG+ AV+S+K P+P+F QTK KL +S+ ++AV++ +E +++LLENP+ Sbjct: 181 TNLSGEDIREGMTAVISIKHPNPQFEGQTKTKLGNSDARAAVDKAFSEAFSKFLLENPSV 240 Query: 368 AKIVVGKIIDAARAREAA 385 + +V K A +AR AA Sbjct: 241 GRKIVEKGQLAEKARIAA 258 >UniRef50_UPI0001C4799C UPI0001C4799C related cluster n=1 Tax=unknown RepID=UPI0001C4799C Length = 184 Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 102/208 (49%), Positives = 129/208 (62%), Gaps = 27/208 (12%) Query: 15 GLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDD 74 GL+AVRKRPGMYIG T + GLHH+V+E+VDN+IDEALAG+ +I V I DN + V D+ Sbjct: 1 GLEAVRKRPGMYIGSTSE-RGLHHLVWEIVDNSIDEALAGYANQIEVVIEKDNWIKVTDN 59 Query: 75 GRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVI 134 GRGIP I + G A EVI+T SVVNALSQ LE+ + Sbjct: 60 GRGIPVDIQEKMGRPAVEVILTS-----------------------SVVNALSQDLEVYV 96 Query: 135 QREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLREL 194 R I+ Q Y+ GVPQ L G T+KTGT++RF E FT T + YE L +R+REL Sbjct: 97 HRNETIYHQAYKKGVPQFDLKEVGTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIREL 156 Query: 195 SFLNSGVSIRLRDKRDG---KEDHFHYE 219 +FLN G+ I LRD+RD +ED +HYE Sbjct: 157 AFLNKGIQITLRDERDEENVREDSYHYE 184 >UniRef50_Q6Y3A9 Gyrase B (Fragment) n=1 Tax=Pelobacter acidigallici RepID=Q6Y3A9_PELAC Length = 277 Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 102/200 (51%), Positives = 128/200 (64%), Gaps = 2/200 (1%) Query: 120 VSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNV 179 VSVVNALS+ LEL I+ + K+ I G APLA TG T K GT V F P E F Sbjct: 1 VSVVNALSKWLELEIRGDEKLFPPILPGGGXVAPLAETGATRKRGTKVTFMPEEEIFETT 60 Query: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKR-DGKEDHFHYEGGIKAFVEYLNKNKTPIHP 238 +++L++RLREL+FLN+GV I + D R D K F+YEGGI +FVEYLN+NK +HP Sbjct: 61 EF-SFDVLSQRLRELAFLNAGVRIGISDMRVDNKSHEFYYEGGINSFVEYLNRNKIAVHP 119 Query: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 YF EK G+ EV++Q+ND F E I+ F NNI +GGTHL GF+AA+TRT+NAY Sbjct: 120 KPIYFRGEKGGVETEVSMQYNDSFDEKIFSFANNINTHEGGTHLVGFKAALTRTMNAYAA 179 Query: 299 KEGYSKKAKVSATGDDAREG 318 KK KVS +GD G Sbjct: 180 ANNLLKKEKVSISGDGPARG 199 >UniRef50_B2ZYK3 Type IIA topoisomerase n=1 Tax=Ralstonia phage RSL1 RepID=B2ZYK3_9CAUD Length = 882 Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 159/549 (28%), Positives = 248/549 (45%), Gaps = 59/549 (10%) Query: 5 YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIH 64 YDS+SI+ + VR P MYIG D GL + E++DN DE +A + + Sbjct: 9 YDSTSIETQRFPHNVRASPAMYIGGVD-AYGLWTVTKELLDNGADEFMAQRNDAVFLHFD 67 Query: 65 ADNSVSVQDDGRGIPTGIHP----------EEGVSAAEVIMTVLHAGGKFDDNSYKVSGG 114 AD S V D G GIP G+ + + + + LH GK+ +Y VS G Sbjct: 68 ADGSYWVWDHGHGIPQGVKTFKLNLNGKVVTQKMPTMQAVFGELHTSGKYRSEAYAVSIG 127 Query: 115 LHGVGVSVVNALSQKLEL----------VIQREGKIHRQIYEHGVPQAPLAVTGETEKTG 164 HGVG NA ++ ++ + ++G++ + + E P+ P TG+ K G Sbjct: 128 SHGVGSKGTNATAEYFDVWTLYEGRWSSIKFKKGELAQPVKECSAPKLP---TGKPLKKG 184 Query: 165 TMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKA 224 T++ F P F+ V F + + +S++N G+SI L K+ K + + G + Sbjct: 185 TLIHFKPDASIFS-VKSFPPSMAVEWATVMSYMNPGLSIHLSSKKGAKT--YLSKKGPQE 241 Query: 225 FVEY-LNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLA 283 ++E+ L KT +F D V +A DG +I TN++ GG H+ Sbjct: 242 YIEHRLAALKTEGERQMFVH--HDDLSDVVLAFTNYDGC--DIRGMTNSVTNGQGGKHVD 297 Query: 284 GFRAAMTRTLNAYMDKEGYSKKAKVSATG----DDAREGLIAVVSVKVPDPKFSSQTKDK 339 A+ L ++ + + KV D +EGL+ +V+ K+ +FSSQ K + Sbjct: 298 SVTGAVYAGLKPWIKTKKVKEDGKVKVVPAFRETDLKEGLVGLVNAKLHKAQFSSQDKAR 357 Query: 340 LVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGA-- 397 L + + E+ + + + EN K + ++ D A + M+++ A Sbjct: 358 LTDNRLGKDYEEAITKKFVAFFKEN----KALAQRLCDRATKLNELKTKFTMSKKAAATL 413 Query: 398 --LDLAGLPGKLA----DCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKIL 451 + GLP K A D + D EL+LVEGDSAGGS K R QA+LPLKGK+L Sbjct: 414 NAVKRNGLPAKYAAFNSDTKVHD---RELFLVEGDSAGGSLKDAR-LPYQAVLPLKGKVL 469 Query: 452 NVEKARFDKMLSSQEVATLITALGCGIGRDEYNPD---KLRYHSIIIMTDADVDGSHIRT 508 N K K L S E+ ++ A IG D D KL II + D D DG + Sbjct: 470 NALKDNKGKALESDEIINILAA----IGYDTKAADPLSKLTVGKIICLADPDPDGPFVAD 525 Query: 509 LLLTFFYRQ 517 + F Y++ Sbjct: 526 TQVRFRYKR 534 >UniRef50_A3SXB5 DNA topoisomerase IV subunit B n=1 Tax=Sulfitobacter sp. NAS-14.1 RepID=A3SXB5_9RHOB Length = 308 Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 104/233 (44%), Positives = 146/233 (62%), Gaps = 11/233 (4%) Query: 5 YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIH 64 YD+SSI+VL+ ++ VR RPGMYIG DD LHHMV E++DN++DEA+AGH I + +H Sbjct: 15 YDASSIQVLEDMEHVRLRPGMYIGGKDD-RALHHMVAEIIDNSMDEAVAGHATWIELELH 73 Query: 65 ADNSVSVQDDGRGIPTGIHPEE-GVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVV 123 + V+V+D+GRGIPT HP++ SA E+I L+AGGKF +SY+ SGGLHGVG SVV Sbjct: 74 ENGHVTVRDNGRGIPTDPHPKDPSKSALEIIFCTLNAGGKFSGDSYETSGGLHGVGSSVV 133 Query: 124 NALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGET-EKTGTMVRFWPSLETFTNVTEF 182 NALS L + + R ++ + G+PQ L G + GT V F P E F + + Sbjct: 134 NALSDHLRVEVARNRELFAMEFSRGIPQGKLEKIGAAPNRRGTAVTFHPDAEIFGPL-KL 192 Query: 183 EYEILAKRLRELSFLNSGVSIRLR-DKRDG---KEDHFHYEGGIKAFVEYLNK 231 + L R ++L SGV IR + ++DG +E FH+ GG+ +YLN+ Sbjct: 193 KPARLFTMARSKAYLFSGVEIRWKCGQQDGDTPQEATFHFPGGLS---DYLNE 242 >UniRef50_UPI0001976865 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Bacillus subtilis subsp. subtilis str. NCIB 3610 RepID=UPI0001976865 Length = 638 Score = 179 bits (455), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 159/550 (28%), Positives = 266/550 (48%), Gaps = 37/550 (6%) Query: 10 IKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADN-- 67 IK L + R++ ++ G D+ +H + E++ N DE + + E IVT+ + Sbjct: 9 IKRLDDREKSREKIAIWYGSADN---YYHGLKEILANGTDEVI-NNFDEGIVTLELFDDL 64 Query: 68 -SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNAL 126 +V V D GRGIP +GV E++ L A K++ S + + G +GVG +V+N Sbjct: 65 QTVRVTDTGRGIPID-GETDGVKNYELLFRTLFASTKYE-TSEQTTTGTNGVGATVLNFT 122 Query: 127 SQKLELVIQREGKIHRQIYEHG--VPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEY 184 S + +G H +E+G + Q ++ GT++ F E + VT ++ Sbjct: 123 SLFFHIESYYDGYKHALKFENGGELVQDLTKEKISEDRHGTVITFKLDPEVYPVVT-YDK 181 Query: 185 EILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKT-PI--HPNIF 241 +++ + +R + I+L +G+E+ FHYE + F E + T P+ P Sbjct: 182 DVVREIVRRFAI--GSHKIKLIFIHNGEEETFHYESVEEYFEELIGSTTTSPVITAPESL 239 Query: 242 YFSTEKDGIGVEVALQWN---DGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Y E+DG ++ L ++ D QE+ + N DGG+ G + N Y Sbjct: 240 Y---EEDGERTQIKLTFSTTTDPIQES---YLNLTYLSDGGSFNDGVITGIKTFCNKYAR 293 Query: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 + K S T +D + V+ +F +QTK + ++ +LL Sbjct: 294 ENKLFPKGINSFTTEDIESSVSFVLVALSNKVEFKNQTKLSTDKKLYRKLAQRHTTQLLE 353 Query: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLA---DCQERDP 415 + +EN K V +++ + +++A++ ++K + + G+ K+A DC++ Sbjct: 354 VFQIENEKGFKKFVNHLLEVQKHNTQSQKAKQQLKKKLSEKVDGIGNKVANLVDCKKHGK 413 Query: 416 ALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALG 475 SE+++ EG SA GS R+ QA PL+GKILN KA + + +Q + LI LG Sbjct: 414 D-SEIFIAEGQSALGSIVLARDAVYQAAYPLRGKILNCLKADYTTIFKNQIITDLIKVLG 472 Query: 476 CGIGRDEYNPD-------KLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVY 528 CGI D+ N D LRY III TD D DG+ I L++T YR MP+++E G+VY Sbjct: 473 CGIQTDKKNKDLDTFNINNLRYGKIIIATDQDSDGAQIACLIITMIYRLMPKLIEEGYVY 532 Query: 529 IAQPPLYKVK 538 IAQ PLY++K Sbjct: 533 IAQTPLYEIK 542 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 41/64 (64%) Query: 735 SIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEE 794 +I R KGLGE++ + ET M+ E+R +++VTV+DA + T MG +V+ RR +I E Sbjct: 569 TIARCKGLGELDAVTMAETAMNEETRNLIKVTVEDAENMIESLETWMGSSVDNRREYISE 628 Query: 795 NALK 798 N K Sbjct: 629 NLYK 632 >UniRef50_C3IT50 DNA gyrase subunit B n=3 Tax=Bacillus thuringiensis RepID=C3IT50_BACTU Length = 726 Score = 179 bits (454), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 171/618 (27%), Positives = 290/618 (46%), Gaps = 103/618 (16%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 +S +Y ++SI L+G + VR+RP +G + G H V E+V N++DE AG ++ Sbjct: 4 LSQNYGNNSIDSLEGAERVRRRPAAVLGSSGI-EGARHGVTEIVGNSVDEGTAGFGSKLD 62 Query: 61 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFD--------------- 105 + D S+S++D GRG+P G + +G+S ++ ++AGGK+ Sbjct: 63 INYFKDGSISIRDYGRGVPMGYNENKGISNWFLVFNEMYAGGKYKDYQEELRAIKDWSTF 122 Query: 106 ---DNSYKVSGGLHGVG-------------VSVVNALSQKLE-------LVIQREGKIH- 141 D +Y S GL+G+G +S+ + ++ K+E L ++H Sbjct: 123 NPTDYNYLFSIGLNGLGAASTQYTSEFFEAISITDGIATKMEFRGGYPILKDANGNEVHA 182 Query: 142 -----RQIYEHG-VPQAPLAVTGET-EKTGTMVRFWPSLETFTNVTEFEYEILAKRLREL 194 R + EHG V + +A T ET E+ GT + + P + F++V + + + Sbjct: 183 IIGEERLLEEHGIVLKEYVAETYETEEENGTYIHWKPDIRVFSDV-DITLGWIKDVCESV 241 Query: 195 SFLNSGVSIRLRDKRDGKEDHFH-YEGGIKAFVEYLNKNKTPIH---PNIFYFSTEKDGI 250 +++ SG+ + L D+ D H Y+ G + + + K ++ P+++ E + I Sbjct: 242 AYI-SGLDVNLYDE---ATDTMHEYQSGTISDLNLILNEKNLVNEDSPSVY----EDNDI 293 Query: 251 GVEVALQWNDGF---------------QENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNA 295 Q N+ F + CF N I + G A +RA + + Sbjct: 294 THGNVKQNNENFIYVFKADVSVVRTREKGKTVCFHNAIKMKGG----AQYRAVDSAVAD- 348 Query: 296 YMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDK----LVSSEVKSAVEQ 351 ++ G +K KV + + G++ V + QTKD+ + ++K+ + + Sbjct: 349 FVIGLGNTKGVKVVERDFEGKLGVVVKSYSNV--ASYKGQTKDEVDDNFIYRDLKTIIYR 406 Query: 352 QMNELLAEYLLENPTDAKIVVGKIIDAARAR----EAARRAREM--TRRKGALDLAGLPG 405 +N EY N D V K+++ A R E A+ RE+ T R L LP Sbjct: 407 LIN---TEYHKGNK-DIIEFVDKVLEEAELRITLQEQAKMLREVKKTSRTRKLPEKFLPS 462 Query: 406 KLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQ 465 KL +E+ SEL++VEGDSA S K R+ QAI ++GK+ N KA F K++ S+ Sbjct: 463 KL--FKEKIVKKSELWIVEGDSAKTSVKNARDPLFQAIYAVRGKVTNALKASFKKLMESE 520 Query: 466 EVATLITALGCG-----IGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPE 520 E+ + + LG G + +E++ D R+ III TDAD DG IR LL F+ PE Sbjct: 521 EIRDIFSLLGTGMDVELLDDNEFDIDACRFEKIIIGTDADEDGYQIRVLLFVVFWVLAPE 580 Query: 521 IVERGHVYIAQPPLYKVK 538 I++RG +YI + P + +K Sbjct: 581 IIKRGMLYIGETPKFGIK 598 >UniRef50_Q0QCK3 ParE (Fragment) n=163 Tax=cellular organisms RepID=Q0QCK3_ECOLX Length = 251 Score = 179 bits (453), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 102/238 (42%), Positives = 148/238 (62%), Gaps = 5/238 (2%) Query: 308 VSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTD 367 V + +D + V+SVK+ DP+F+ QTK++L S + + V + + +L +N Sbjct: 16 VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQA 75 Query: 368 AKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDS 427 A+++ I +A+ R R A+++ R+K A LPGKLADC +D +EL+LVEGDS Sbjct: 76 AELLAEMAISSAQRR--MRAAKKVVRKKLTSGPA-LPGKLADCTAQDLNRTELFLVEGDS 132 Query: 428 AGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDK 487 AGGSAKQ R+R+ QAI+PLKGKILN + D++L+SQEV + A+ GI D + + Sbjct: 133 AGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAI--GIDPDSDDLSQ 190 Query: 488 LRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQY 545 LRY I I+ DAD DG HI TLL F + +V+ GHVY+A PPLY++ GK+ Y Sbjct: 191 LRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYY 248 >UniRef50_D2J2Q7 DNA gyrase subunit B (Fragment) n=7 Tax=Corynebacterineae RepID=D2J2Q7_9ACTO Length = 249 Score = 175 bits (443), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 101/249 (40%), Positives = 137/249 (55%), Gaps = 38/249 (15%) Query: 126 LSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYE 185 LS K+EL IQ +G Q Y + P A L T KTGT VRFWP E FT T F E Sbjct: 1 LSTKVELEIQNDGFNWEQTYTYATPGA-LEKGTPTRKTGTTVRFWPDPEIFTETTRFNAE 59 Query: 186 ILAKRLRELSFLNSGVSIRLRDKR----------DGKEDH-------------------- 215 +A+RL+E++FLN G++I L D+R DG E+ Sbjct: 60 TVARRLQEMAFLNKGLTITLTDQRPQAIEPPGDADGDEESGTTEAAEVVKSEEEKAAAAA 119 Query: 216 ------FHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCF 269 +HY G+ ++++LN+ K IH + F+ + G VEVA+QWN G+ E+++ F Sbjct: 120 KPKTRTYHYPDGLVDYIKHLNRTKQSIHTTVVGFTGQGTGHEVEVAMQWNAGYSESVHTF 179 Query: 270 TNNIPQRDGGTHLAGFRAAMTRTLNAY-MDKEGYSKKAKVSATGDDAREGLIAVVSVKVP 328 N I +GGTH GFRAA+T T+N Y +DK+ K + +GDD REGL AV+SVKV Sbjct: 180 ANTINTHEGGTHEEGFRAALTLTVNKYAVDKKLIKDKKEDRLSGDDIREGLAAVISVKVG 239 Query: 329 DPKFSSQTK 337 DP+F QTK Sbjct: 240 DPQFEGQTK 248 >UniRef50_A3Q8K7 DNA topoisomerase (ATP-hydrolyzing) n=6 Tax=Mycobacterium RepID=A3Q8K7_MYCSJ Length = 677 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 167/606 (27%), Positives = 267/606 (44%), Gaps = 71/606 (11%) Query: 4 SYDSSSIKVLKGLDAVRKRPGMYIG-DTDDGTGLHHMVFEVVDNAIDE-ALAGHC-KEII 60 SY ++ I L + R RP + +G D L+ + E++DNAI+E A H + Sbjct: 2 SYTAADITELDDVQHTRLRPAVNLGLDV-----LNTALRELIDNAIEEVADPSHGGSAVT 56 Query: 61 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVS--GGLHGV 118 +T+H D SV V DDGRG+P P G + + AGGKF ++ S GL+G+ Sbjct: 57 ITLHDDGSVGVADDGRGLPVDSDPVNGKNGIVKTLGTARAGGKFSAHTDAASTGAGLNGI 116 Query: 119 GVSVVNALSQKLELVIQREGKIHRQIYEHGVP----------QAPLAVTGETEKT----- 163 G + +S + ++ ++R GK + Q + G P AP +T+K Sbjct: 117 GAAAAVFISARTDVTVRRAGKTYLQSFGRGYPGVFEGKDFDPDAPF-TRADTQKLRGTGN 175 Query: 164 ------GTMVR--FWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKR-DGKE- 213 GT VR F P++ + + E + R + ++ GV + + D+ G E Sbjct: 176 RKPDVHGTTVRILFDPAVVPDSQIDIGEVLL---RAHAAARMSPGVHLSVIDEGWPGDEV 232 Query: 214 -----DHFHYEGGIKAFVEYLNKNKTPIHPNIFY-------FSTEKDGIGVEVALQWNDG 261 + F G ++ + P + ++T + +L Sbjct: 233 APALLEPFTGPWGTDTLLDLMCTAAGTPAPGVRAVVEGRGEYTTGRGPTPFRWSLTAGPA 292 Query: 262 FQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREG--L 319 + F N + GG+HL AAM A D+ + + A G++ E Sbjct: 293 EPATVAAFCNTVRTPGGGSHLT---AAMKGLSEALADRASRMRDLGL-AKGEEGPEAQDF 348 Query: 320 IAVVSVKV----PDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIV---V 372 AV ++ V PD + SQ K + S + A+ + + + NP + V Sbjct: 349 AAVTALAVDTRAPDVAWDSQAKTAVSSRSLNVAMAPDVARSVTIWA-ANPANGDAVSLWT 407 Query: 373 GKIIDAARAREAAR----RAREMTRRKGALDLAGLPGKLADCQERD-PALSELYLVEGDS 427 +++ARAR +A R+R ++ KG LP KL +E + +EL+L EGDS Sbjct: 408 KLALESARARRSAEGAKARSRAASKAKGLGTNLSLPPKLLPSRETGRGSGAELFLCEGDS 467 Query: 428 AGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDK 487 A G+ K R+ QA PLKGK NV +K + E ++ LGCG+ RD +P+ Sbjct: 468 ALGTIKAARDATFQAAFPLKGKPPNVYGFALNKARAKDEFDSIERILGCGV-RDNCDPEL 526 Query: 488 LRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIK 547 RY I+ +DAD DG +I + L++ F +VE G VY+ PPL+ VK G Q Y + Sbjct: 527 CRYDRILFASDADPDGGNINSSLISMFLDFYRPLVEAGMVYVTLPPLFVVKDGTQRIYCQ 586 Query: 548 DDEAMD 553 D+ D Sbjct: 587 DESERD 592 Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 2/67 (2%) Query: 730 SRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRR 789 S+R + +QR KGLGEM+ + W T +DP+ R ++RV D + ++L TL G E RR Sbjct: 602 SKRKVEVQRNKGLGEMDADDFWNTVLDPQRRTVIRVHPDD--SENKLHHTLFGGPPEGRR 659 Query: 790 AFIEENA 796 ++ + A Sbjct: 660 TWMADVA 666 >UniRef50_B1PJM5 DNA gyrase subunit B (Fragment) n=1 Tax=Micromonospora tulbaghiae RepID=B1PJM5_9ACTO Length = 215 Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 93/218 (42%), Positives = 134/218 (61%), Gaps = 10/218 (4%) Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTE 181 VVNALS ++ + I ++G + Q H P+ PL ET++TG+ V FWP + F V + Sbjct: 1 VVNALSPRMGVEIHKDGFVWGQRGNHSKPR-PLEKGEETDRTGSAVCFWPDPDFFETV-D 58 Query: 182 FEYEILAKRLRELSFLNSGVSIRLRDKR-----DGK--EDHFHYEGGIKAFVEYLNKNKT 234 F++ + +RL+E++FL G++I L D+R DGK E FHYEGGI F LN +K+ Sbjct: 59 FDFHTIYRRLQEMAFLTRGLTIHLLDERVPEDEDGKTREVTFHYEGGIGDFGRRLNASKS 118 Query: 235 PIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLN 294 PIH F E+ G+ VE+A+Q N+ + E++Y F NNI +GGTH GFRAA+T +N Sbjct: 119 PIHKTGGEFGAEETGMSVEIAMQGNESYGESVYTFANNIDTHEGGTHEEGFRAALTSVVN 178 Query: 295 AYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKF 332 Y E K +G+D REGL A++SVK+ DP+F Sbjct: 179 RY-GAEKKLLKGDERLSGEDIREGLAAIISVKLTDPQF 215 >UniRef50_P90520 DNA topoisomerase 2, mitochondrial n=1 Tax=Dictyostelium discoideum RepID=TOP2M_DICDI Length = 1284 Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 142/536 (26%), Positives = 249/536 (46%), Gaps = 41/536 (7%) Query: 35 GLHHMVFEVVDNAIDEALAGHCKEII-VTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAE 92 GL + E++ NA D I V I+ + NS+S+ +DG+GIP +H E E Sbjct: 172 GLLKIYDEILVNAADNKKRDSKMSFIKVEINPNENSISIMNDGKGIPVVMHQTENCYVVE 231 Query: 93 VIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKL--ELVIQREGKIHRQIYEHGV- 149 ++M L +G F+D+ KV GG +G G + N S++ E V + GK + Q + + + Sbjct: 232 MVMGNLMSGSNFNDSELKVVGGRNGFGAKLTNIFSKEFTVETVDKSSGKKYFQRWSNNMG 291 Query: 150 --PQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILA---KRLRELSFLNSGVSIR 204 + + GE E T + F P LE F + ++ IL +RL +++ N+ + + Sbjct: 292 DRSEPIITPIGEGESDYTKITFKPDLEKFKIKSLWDDNILQLMERRLYDIAGCNTELMVT 351 Query: 205 LRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGF-- 262 L +GK +++++ +K + +LN N T N + E G E++ +W G Sbjct: 352 L----NGKRLNYNFQSYVKLYEHHLN-NSTKREDNEEQYREESFEFG-EISPRWKIGIGL 405 Query: 263 ----QENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREG 318 Q F N+I GGTH+ + R Y+ ++ K + + + + Sbjct: 406 SETGQFTQVSFVNSINTVKGGTHVNFLADQIVR----YVGEKLKKKHSDLEIRPMNIKHH 461 Query: 319 LIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDA 378 L V+ V +P F SQ+K+ L + + ++ E L ++N ++ ++ Sbjct: 462 LALFVNCLVDNPSFDSQSKETLTTKPMLFGSTPEIPESLLAQFVKNSK----IIERVAGW 517 Query: 379 ARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSE---LYLVEGDSAGGSAKQG 435 A ++ A + R+ L KL D S+ L + EGDSA A G Sbjct: 518 ALMKQKADLIHSTSGRQSKTTLIKSISKLDDANWAGGLKSKECTLIITEGDSAKSLALAG 577 Query: 436 RN---RKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDK----L 488 + R + + PL+GK+LNV ++LS++E+ L T LG ++ Y+ D+ L Sbjct: 578 LSVVGRNSYGVFPLRGKLLNVRDVASKQLLSNEEINNLTTILGLS-HKNSYDTDESMEDL 636 Query: 489 RYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQ 544 RY ++IM D D DGSHI+ L++ F + P +++RG + P+ K K ++ Sbjct: 637 RYGRVMIMADQDHDGSHIKGLVMNFIHYFWPNLLKRGFLVEFVTPIIKATKSSTQK 692 >UniRef50_Q55BP5 Probable DNA topoisomerase 2 n=1 Tax=Dictyostelium discoideum RepID=TOP2_DICDI Length = 1521 Score = 158 bits (399), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 157/581 (27%), Positives = 267/581 (45%), Gaps = 91/581 (15%) Query: 16 LDAVRKRPGMYIGDTDDG--------------------TGLHHMVFEVVDNAID-EALAG 54 LD + RP YIG T+ G++ + E++ NA D + G Sbjct: 113 LDQILLRPDTYIGSTERQEEELWVWEDKRMVHRKVSFVPGIYKIFDEILVNAADNKQREG 172 Query: 55 HCKEIIVTIHADNS-VSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSG 113 + K I V I + +SV +DG GIP +H E + E+I L +DD+ +++G Sbjct: 173 NMKFIKVVIDREKGFISVTNDGAGIPIQVHSEHKIYIPELIFGNLLTSSHYDDSEKRLTG 232 Query: 114 GLHGVGVSVVNALSQKL--ELVIQREGKIHRQIYEHGV--PQAPLAVTGETEKTGTMVRF 169 G +G G + N S K E + K+++Q + + + + P + + + T + F Sbjct: 233 GRNGFGAKLANIFSTKFIVECADSKSKKLYKQTFTNNMRSKEDPKITSYQNKTDYTKITF 292 Query: 170 WPSLETFTNVTEFEYEI---LAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFV 226 +P L+ F + EF+ ++ L+KR+ +++ N + + L D+ E GI++F Sbjct: 293 YPELDRF-GMVEFDDDLVALLSKRVYDIAGCNPTLKVSLNDE----------ELGIRSFE 341 Query: 227 EYLNKNKTPIHPNIFYFSTEKDGIGV---------EVALQWNDGFQENIYCFTNNIPQRD 277 +Y+N YF E++ V E+A+ + Q N F N+I Sbjct: 342 KYIN----------LYFPDEENAPKVYYEKVSDRWELAVTLSKESQFNQVSFVNSICTVK 391 Query: 278 GGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDA--REGLIAVVSVKVPDPKFSSQ 335 GGTH+ A++ + A +E +KK K SA A + L V+ + +P F SQ Sbjct: 392 GGTHVT---HALSNIVTAI--QEQVNKKNKGSADIKPAFIKNHLSVFVNCLIENPHFDSQ 446 Query: 336 TKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARARE--AARRAREMTR 393 TK+ L S + +E + +L++ + +V I++ A+ ++ A +R+ Sbjct: 447 TKETLTSKISSFGSRCEPSEKFIKRVLDSKSG---IVASILEFAQFKDQSALKRSTSSGG 503 Query: 394 RKGA-----LDLAGLPG--KLADCQERDPALSELYLVEGDSAGGSAKQGRN---RKNQAI 443 +KG LD A L G K DC L L EGDSA A G + + + Sbjct: 504 KKGKVSIPKLDDANLAGGTKSEDCT--------LILTEGDSAKSLATAGISVVGKDHYGA 555 Query: 444 LPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDG 503 PLKGK+LNV + + K++++ E+ ++T LG G+ LRY ++IMTD D DG Sbjct: 556 FPLKGKLLNV-RDQSTKVINNDEINNIVTILGLKYGKVYETLSDLRYGHLMIMTDQDHDG 614 Query: 504 SHIRTLLLTFFYRQMPEIVER-GHVYIAQPPLYKVKKGKQE 543 SHI+ L++ + P ++ G + P+ KV K Q+ Sbjct: 615 SHIKGLIINMVHHFWPTLLRMPGFLVEFITPIVKVFKNNQK 655 >UniRef50_A7ANB1 DNA topoisomerase 2 n=3 Tax=Piroplasmida RepID=A7ANB1_BABBO Length = 1437 Score = 158 bits (399), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 151/577 (26%), Positives = 243/577 (42%), Gaps = 83/577 (14%) Query: 16 LDAVRKRPGMYIGDTDDGT----------------------GLHHMVFEVVDNAID---- 49 L+ + RP YIG+T+ T GL+ + E++ NA D Sbjct: 18 LEHILLRPDTYIGNTEMLTQQMWVYNQEAKRMLYEPVTFIPGLYKIFDEILVNAADVHAR 77 Query: 50 ---EALAGHCKEIIVTIHADN-SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFD 105 + I V +A +++V +DG IP IH E V E+I L +D Sbjct: 78 QQSDPSLTRMTCIKVNFNATTGAITVFNDGEPIPVEIHKEHNVYVPEMIFGELLTSDNYD 137 Query: 106 DNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQI---YEHGVPQ--APLAVTGET 160 D +++GG +G G + N S+ + + K H+Q +E + + +P V Sbjct: 138 DEDGRITGGRNGFGAKLTNIFSKSFSVTCA-DSKRHKQFAMKWESNMTRVASPAKVGSYH 196 Query: 161 EKTGTMVRFWPSLETF--TNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHY 218 K V F P E F + E ++L KR+ +++ +G+ + D+R G D Y Sbjct: 197 GKDFVKVTFIPDYERFGIPTMDEGTLKVLLKRVYDVAG-TTGLRVYWNDERLGISDFKQY 255 Query: 219 EGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGV-------EVALQWNDGFQENIYCFTN 271 G YF + + V EV + DG F N Sbjct: 256 VG--------------------LYFEDDPTVVKVYDKAHRWEVMVSATDGSGFQQVSFVN 295 Query: 272 NIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPK 331 NI GG+H+ + + + A +K K V + + V+ ++ +P Sbjct: 296 NITTLKGGSHV---QHVLEPLVTALTNKVKSKNKDGVELKPYQIKNYIFLFVNCQIVNPT 352 Query: 332 FSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREM 391 F SQTK+ L + K + MN +L++ + +I+ A+ R ++M Sbjct: 353 FDSQTKETLTTKPAKFGSKYIMNPKAVAQILKS-----TLTERILSFAQGRLNIELKKKM 407 Query: 392 TRRKGALDLAGLPGKLADCQE---RDPALSELYLVEGDSAGGSAKQGRN---RKNQAILP 445 K L G+P KL D R L L EGDSA S G + R N + P Sbjct: 408 KVTKAVNRLTGIP-KLEDANNAGTRHARNCTLILTEGDSAKTSCLAGLSVVGRDNYGVFP 466 Query: 446 LKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDE-YNPDKLRYHSIIIMTDADVDGS 504 LKGK+LNV A + +++ + E+ ++ +G + + E PD LRY SI+IMTD D DGS Sbjct: 467 LKGKLLNVRDASYKQLVQNAEIQNILKIMGLDVSKKEQTTPDGLRYGSIMIMTDQDYDGS 526 Query: 505 HIRTLLLTFFYRQMPEIVE-RGHVYIAQPPLYKVKKG 540 HI+ LL+ + P++++ RG + P+ K KG Sbjct: 527 HIKGLLINLLHYFWPKMIQCRGFIREFVTPIIKATKG 563 >UniRef50_D2UZM0 DNA topoisomerase II n=1 Tax=Naegleria gruberi RepID=D2UZM0_NAEGR Length = 1457 Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 145/511 (28%), Positives = 235/511 (45%), Gaps = 57/511 (11%) Query: 35 GLHHMVFEVVDNAIDEALAGH-CKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAE 92 L+ + E++ NA D ++ C +I VTI+ + N +SV ++G GIP IH E + Sbjct: 102 ALYKIFDEILVNAADHSVRDETCNKIKVTINPEQNEISVYNNGAGIPVKIHAEHKIYVPT 161 Query: 93 VIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKL--ELVIQREGKIHRQIYEHGV- 149 +I L FDD +V+GG +G G + N S+K E V E K RQ + + Sbjct: 162 MIFGHLLTSSNFDDTQKRVTGGRNGYGAKLTNIFSEKFIVETVDSEEKKKFRQTWTQNME 221 Query: 150 -PQAPLAVTGETEKTGTMVRFWPSLETF--TNVTEFEYEILAKRLRELS-FLNSGVSIRL 205 + P T ++ T + F+P L F + + +L KR+ +L+ L +G+ I L Sbjct: 222 KEEEPKITTCSKAESYTEITFYPDLSKFGMDKLDDDIVSLLKKRVYDLAGTLKTGIGIYL 281 Query: 206 RDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQEN 265 K+ G+K F +Y+ I I YF +DG +V + ++G + Sbjct: 282 NGKKI---------TGMKTFKDYV--KLYTIDKEIHYF---EDGKRWKVGITLSEGSMQQ 327 Query: 266 IYCFTNNIPQRDGGTHLAGFRAAMTRTL-NAYMDKEGYSKKAKVSATGDDAREGLIAVVS 324 + F N+I GG H+ ++ + A + K K A + + L VS Sbjct: 328 V-SFVNSICTTKGGKHVDHIVNQVSDNIKKALVKKNNTIKPAYI-------KNQLWVFVS 379 Query: 325 VKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREA 384 + +P F SQ+K+ L +S + +++E + V K+ A + A Sbjct: 380 SLIINPSFDSQSKETLTTSMKDFGSKCKLDEAFLKK-----------VTKMASEAVLKYA 428 Query: 385 ARRAREMTRRKGALDLAGLPG--KLADCQERDPALSE---LYLVEGDSA-----GGSAKQ 434 ++ + +K + L G KL D + SE L L EGDSA GG + Sbjct: 429 DFKSEKALNKKSGTKKSRLTGISKLDDANDAGSKNSEKCTLILTEGDSAKALAVGGLSVV 488 Query: 435 GRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPD--KLRYHS 492 GR+ + PLKGK LNV + DK++ ++E++TL LG + D LRY S Sbjct: 489 GRDY--YGVFPLKGKPLNVRDCKLDKVVKNEEISTLAKILGLKFDKTYTKEDIKSLRYGS 546 Query: 493 IIIMTDADVDGSHIRTLLLTFFYRQMPEIVE 523 I+IM D D DGSHI+ LL+ F ++ P +++ Sbjct: 547 IMIMADQDHDGSHIKGLLINFIHKFWPSLLK 577 >UniRef50_B6K4K4 DNA topoisomerase 2 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K4K4_SCHJY Length = 1499 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 136/525 (25%), Positives = 249/525 (47%), Gaps = 37/525 (7%) Query: 35 GLHHMVFEVVDNAIDEALAGHCKEII-VTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAE 92 GL+ + E++ NA D + + V I + N +SV ++G+GIP IH +EG+ E Sbjct: 121 GLYKIFDEIIVNAADNKVRDPTMNTLKVEIDPEANVISVYNNGKGIPVEIHEKEGIYIPE 180 Query: 93 VIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKL--ELVIQREGKIHRQIYEHGVP 150 +I L +DDN KV+GG +G G + N S + E + K ++Q + + Sbjct: 181 LIFGHLLTSSNYDDNQKKVTGGRNGYGAKLCNIFSHEFTVETADKLRMKKYKQTWTENMS 240 Query: 151 QA--PLAVTGETEKTGTMVRFWPSLETF--TNVTEFEYEILAKRLRELSFLNSGVSIRLR 206 + P V + T + F P L F T + + ++ +R+ +++ + + L Sbjct: 241 KKSEPKVVDMKRADEYTKITFKPDLAKFGMTKLDDDLVSVVKRRVYDMAGTIPDIKVFLN 300 Query: 207 DKRDGKEDHFHYEGGIKAFVEYL-NKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQEN 265 ++R ++ Y ++ FV L N+ + P I Y ++ EVA +DG +N Sbjct: 301 NERINIKNFRKY---VELFVSSLRNRTDSTKPPTILY---DRPNERWEVAYTLSDGQFKN 354 Query: 266 IYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD-DAREGLIAVVS 324 I F N+I GGTH+ + + + A +SKK K +A + L ++ Sbjct: 355 I-SFVNSIATTRGGTHVNYVADEIVKRVQA-----EFSKKNKHAALKPFQIKNNLWLFIN 408 Query: 325 VKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREA 384 ++ +P F SQTK+ L + + +++ + L+++ I V + A+A + Sbjct: 409 CQIVNPSFDSQTKETLTTKPSAFGSKCDLSDTFFKQLIKSEI---IAVCSELAKAKADQQ 465 Query: 385 ARRAREMTRRKGALDLAGLPGKLADCQE---RDPALSELYLVEGDSAGGSAKQGRN---R 438 + +R + + GLP KL+D + R+ L L EGDSA G R Sbjct: 466 MSKTDGKSRSR----ITGLP-KLSDANKAGTRESKKCTLILTEGDSAKTLVVSGLGVVGR 520 Query: 439 KNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTD 498 + PL+GK+LNV +A ++++++++E+ + LG + + D LRY ++IMTD Sbjct: 521 DYYGVYPLRGKLLNVREASYNQIINNKEIQAIKKILGLAHNKKYTSTDGLRYGHLMIMTD 580 Query: 499 ADVDGSHIRTLLLTFFYRQMPEIVE-RGHVYIAQPPLYKVKKGKQ 542 D DGSHI+ L++ + P ++ G + P+ + +KG++ Sbjct: 581 QDHDGSHIKGLIINYLESTYPSLLHLEGFLIEFITPIVRCRKGRE 625 >UniRef50_Q6PUA3 DNA topoisomerase 2 n=4 Tax=Tetrahymena thermophila RepID=Q6PUA3_TETTH Length = 1662 Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 151/578 (26%), Positives = 252/578 (43%), Gaps = 85/578 (14%) Query: 16 LDAVRKRPGMYIGDT-----------DDGT-----------GLHHMVFEVVDNAIDE-AL 52 L+ + RP Y+G DDG+ L+ + E++ NA D Sbjct: 13 LEHILLRPDTYVGSNEYQDEQMWVLADDGSSFENRQIKYVPALYKIFDEILVNAADNYQR 72 Query: 53 AGHCKEIIVTI-HADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKV 111 K + V I +N +S+ +DG+GIP IH E + E+I L ++D KV Sbjct: 73 DKRMKRLDVIIDQKNNCISILNDGKGIPVQIHKEYNIYVPELIFGHLLTSSNYNDEEKKV 132 Query: 112 SGGLHGVGVSVVNALSQKL--ELVIQREGKIHRQIYEHGVP-QAPLAVTGETEKTGTMVR 168 GG +G G + N S K E + K + + + Q+ ++ TE T + Sbjct: 133 VGGRNGFGAKLTNIFSTKFIVESADSKNKKKFQMTWTKNMSEQSEPQISSYTESDYTKIT 192 Query: 169 FWPSLETFTNVTEFEYEI---LAKRLRELS-FLNSGVSIRLRDKRDGKEDHFHYEGGIKA 224 F+P L+ F ++ E E +I + KR+ +++ + V + L +R I + Sbjct: 193 FYPDLKKF-HMKELEKDIVDLMKKRVYDMAGVIGGSVKVSLNGER----------ISISS 241 Query: 225 FVEYLNKNKTPIHPNIFYFSTE-------KDGIGV-----EVALQWNDG-FQENIYCFTN 271 F +Y + FY + D G EV ++G FQ+ F N Sbjct: 242 FSDYCD----------FYLKNQGAEVIKVSDNKGTNNQRWEVIASLSEGQFQQ--VSFVN 289 Query: 272 NIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPK 331 +I GGTH+ +T L + K K+ ++ + L V+ + +P Sbjct: 290 SICTSKGGTHVNYITDQITEKLMETLKK----KEKSLNIKQFQVKSHLWIFVNCLIENPS 345 Query: 332 FSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREM 391 F +QTK+ L + +++E + LL++ ++ I+ ARA+E A+ A+ + Sbjct: 346 FDTQTKETLTLRQQSFGSTCEVSEKFIKELLKSN-----IINHILLQARAKEQAKMAKTL 400 Query: 392 TRRKGALDLAGLPGKLADCQE---RDPALSELYLVEGDSAGGSAKQG---RNRKNQAILP 445 + +K + L G+P KL D + R+ L + EGDSA A G R + P Sbjct: 401 SAKKQSR-LLGVP-KLEDANDAGTRNAESCTLIITEGDSAKALAMSGIEVVGRDKFGVFP 458 Query: 446 LKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSH 505 LKGK+LNV + ++ + E+ +I +G + + N LRY SI+IM D D DGSH Sbjct: 459 LKGKMLNVRDSTSKQITENLEIQNIIKVMGMKLNTNYDNVKSLRYGSIMIMADQDHDGSH 518 Query: 506 IRTLLLTFFYRQMPEIVER-GHVYIAQPPLYKVKKGKQ 542 I+ L + F P + + G + P+ KV+KG Q Sbjct: 519 IKGLFINFIQNFWPSLFQMDGFLKEFITPIVKVRKGNQ 556 >UniRef50_B3H4G2 DNA topoisomerase 2 n=14 Tax=Magnoliophyta RepID=B3H4G2_ARATH Length = 1438 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 149/532 (28%), Positives = 248/532 (46%), Gaps = 61/532 (11%) Query: 17 DAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAID-EALAGHCKEIIVTIHAD-NSVSVQDD 74 D + +RP Y+ GL+ + E++ NA D + + V I + N +SV + Sbjct: 68 DEMVQRPVTYV------PGLYKIFDEILVNAADNKQRDAKMDSVQVVIDVEQNLISVCNS 121 Query: 75 GRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVI 134 G G+P IH EEG+ E+I L +DDN K +GG +G G + N S E +I Sbjct: 122 GAGVPVEIHQEEGIYVPEMIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFST--EFII 179 Query: 135 Q----REGKIHRQIYEH--GVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILA 188 + + K ++Q++E+ G P+ + T V F P L+ F N+TE E +++A Sbjct: 180 ETADGKRLKKYKQVFENNMGKKSEPVITKCNKSENWTKVTFKPDLKKF-NMTELEDDVVA 238 Query: 189 ---KRLRELS-FLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKT--PIHPNIFY 242 KR+ +++ L V + L K+ + Y + ++ NK++T P+ P + Sbjct: 239 LMSKRVFDIAGCLGKSVKVELNGKQIPVKSFTDY---VDLYLSAANKSRTEDPL-PRL-- 292 Query: 243 FSTEKDGIGVEVALQWNDG-FQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEG 301 TEK EV + ++G FQ+ F N+I GGTH+ +T + ++ Sbjct: 293 --TEKVNDRWEVCVSLSEGQFQQ--VSFVNSIATIKGGTHVD----YVTSQITNHIVAAV 344 Query: 302 YSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLV--SSEVKSAVEQQMNELLAE 359 K + + + L V+ + +P F SQTK+ L S S E L+E Sbjct: 345 NKKNKNANVKAHNVKNHLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCE------LSE 398 Query: 360 YLLENPTDAKIVVGK--IIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQE---RD 414 L+ VGK +++ + ++ +++ + GA L KL D E ++ Sbjct: 399 DFLKK-------VGKSGVVENLLSWADFKQNKDLKKSDGAKTGRVLVEKLDDAAEAGGKN 451 Query: 415 PALSELYLVEGDSAGGSAKQGRN---RKNQAILPLKGKILNVEKARFDKMLSSQEVATLI 471 L L L EGDSA A GR+ + PL+GK+LNV +A ++ +++E+ L Sbjct: 452 SRLCTLILTEGDSAKSLALAGRSVLGNNYCGVFPLRGKLLNVREASTTQITNNKEIENLK 511 Query: 472 TALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVE 523 LG N + LRY ++IMTD D DGSHI+ LL+ F + P +++ Sbjct: 512 KILGLKQNMKYENVNSLRYGQMMIMTDQDHDGSHIKGLLINFIHSFWPSLLQ 563 >UniRef50_P30182 DNA topoisomerase 2 n=6 Tax=Eukaryota RepID=TOP2_ARATH Length = 1473 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 149/532 (28%), Positives = 248/532 (46%), Gaps = 61/532 (11%) Query: 17 DAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAID-EALAGHCKEIIVTIHAD-NSVSVQDD 74 D + +RP Y+ GL+ + E++ NA D + + V I + N +SV + Sbjct: 68 DEMVQRPVTYV------PGLYKIFDEILVNAADNKQRDAKMDSVQVVIDVEQNLISVCNS 121 Query: 75 GRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVI 134 G G+P IH EEG+ E+I L +DDN K +GG +G G + N S E +I Sbjct: 122 GAGVPVEIHQEEGIYVPEMIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFST--EFII 179 Query: 135 Q----REGKIHRQIYEH--GVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILA 188 + + K ++Q++E+ G P+ + T V F P L+ F N+TE E +++A Sbjct: 180 ETADGKRLKKYKQVFENNMGKKSEPVITKCNKSENWTKVTFKPDLKKF-NMTELEDDVVA 238 Query: 189 ---KRLRELS-FLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKT--PIHPNIFY 242 KR+ +++ L V + L K+ + Y + ++ NK++T P+ P + Sbjct: 239 LMSKRVFDIAGCLGKSVKVELNGKQIPVKSFTDY---VDLYLSAANKSRTEDPL-PRL-- 292 Query: 243 FSTEKDGIGVEVALQWNDG-FQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEG 301 TEK EV + ++G FQ+ F N+I GGTH+ +T + ++ Sbjct: 293 --TEKVNDRWEVCVSLSEGQFQQ--VSFVNSIATIKGGTHVD----YVTSQITNHIVAAV 344 Query: 302 YSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLV--SSEVKSAVEQQMNELLAE 359 K + + + L V+ + +P F SQTK+ L S S E L+E Sbjct: 345 NKKNKNANVKAHNVKNHLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCE------LSE 398 Query: 360 YLLENPTDAKIVVGK--IIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQE---RD 414 L+ VGK +++ + ++ +++ + GA L KL D E ++ Sbjct: 399 DFLKK-------VGKSGVVENLLSWADFKQNKDLKKSDGAKTGRVLVEKLDDAAEAGGKN 451 Query: 415 PALSELYLVEGDSAGGSAKQGRN---RKNQAILPLKGKILNVEKARFDKMLSSQEVATLI 471 L L L EGDSA A GR+ + PL+GK+LNV +A ++ +++E+ L Sbjct: 452 SRLCTLILTEGDSAKSLALAGRSVLGNNYCGVFPLRGKLLNVREASTTQITNNKEIENLK 511 Query: 472 TALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVE 523 LG N + LRY ++IMTD D DGSHI+ LL+ F + P +++ Sbjct: 512 KILGLKQNMKYENVNSLRYGQMMIMTDQDHDGSHIKGLLINFIHSFWPSLLQ 563 >UniRef50_D2V5K5 DNA topoisomerase II n=1 Tax=Naegleria gruberi RepID=D2V5K5_NAEGR Length = 1135 Score = 149 bits (375), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 143/559 (25%), Positives = 249/559 (44%), Gaps = 38/559 (6%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEA--LAGHCKEII 60 ++Y S+ ++ K L + + + + D L+ ++ E++ NA+D H E+ Sbjct: 28 DTYVGSTERMKKKLFCLDSVNNIKLKEVDFIPALYRIIDEILVNAVDNHHRKGTHTNELR 87 Query: 61 VTI-HADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 119 VTI A N + ++++G+ +P +H E + E++ L G FDDN K +GG +G G Sbjct: 88 VTIDEAKNWIHIRNNGKSVPVEMHKIEKIYVPELVFGNLLTGSNFDDNEVKFTGGRNGYG 147 Query: 120 VSVVNALSQKLEL-VIQREGKIHRQIYEHGVPQAPLAVTGETEKTG---TMVRFWPSLET 175 + N S + ++ +G + Q ++ + Q E ++ V F P + Sbjct: 148 AKLANIFSTDFTIEIMDHKGTHYIQNWKKNMSQISTPTIVENKQKTEPYIQVSFHPDFKK 207 Query: 176 FTNV---TEFEY-EILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNK 231 F + E ++L +R+ +LS N +++ L DK+ ++ Y +K F + Sbjct: 208 FQSTGLNKELNMIDLLKRRIYDLSACNPKLNVYLNDKKVEVDNFKEY---VKLFYQ---N 261 Query: 232 NKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTR 291 N + HP F + G E+A+ + G + N F N+I GG+H+ ++ Sbjct: 262 NSSGEHPEKM-FVHKHICDGWEIAIGASVGEEFNQISFVNSIATVQGGSHVNFVLNQLST 320 Query: 292 TLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQ 351 ++ Y+ K + +S R + ++ + +P F SQTK+ L + + A + Sbjct: 321 KISEYIAKTYTDLQLTISPYM--VRNHITLFINSLIENPTFDSQTKETLTTKSISFAQKV 378 Query: 352 QM-NELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPG--KLA 408 + N+L+ P I+ + A + RE LD A L G + Sbjct: 379 VISNDLINSIANHTPIIDNIIAFANYKQSSASSKKFKKRESKLLIPKLDDANLAGTNRSM 438 Query: 409 DCQERDPALSELYLVEGDSAGGSAKQGRN---RKNQAILPLKGKILNVEKARFDKMLSSQ 465 +C L L EGDSA A G + R + PLKGK+LNV +A D++ +Q Sbjct: 439 ECV--------LILTEGDSAKALAISGLSVVGRDRFGVFPLKGKLLNVREASADQIRDNQ 490 Query: 466 EVATLITALGCG--IGRDEYN--PDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEI 521 E+ L LG D + +LRY +++M D D DGSHI+ LLL + PE+ Sbjct: 491 EIQNLKKILGLDDVSKTDSFEELTKRLRYGKVMLMCDQDHDGSHIKGLLLNMIHFFYPEL 550 Query: 522 VERGHVYIAQPPLYKVKKG 540 + V P+ KV KG Sbjct: 551 LRNNFVDEFITPIIKVSKG 569 >UniRef50_D0MV61 DNA topoisomerase 2 n=2 Tax=Eukaryota RepID=D0MV61_PHYIN Length = 1329 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 142/522 (27%), Positives = 233/522 (44%), Gaps = 51/522 (9%) Query: 39 MVFEVVDNAIDEALAGHCKEIIVTIHADNS----VSVQDDGRGIPTGIHPEEGVSAAEVI 94 ++ VDN + + H II N +SV +DG+GIP H E V E++ Sbjct: 35 IIVNAVDNKVRDPSMRHLDVIIEPGSKANGYRPWISVYNDGKGIPVKFHKTEKVYVPELV 94 Query: 95 MTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQ----REGKIHRQIYEH--- 147 + L G FDD + +++GG HG G + N S+ E V++ G ++Q++ + Sbjct: 95 LGHLLTGSNFDDTAARLTGGRHGYGAKLTNIFSK--EFVVETGDTSMGLRYKQVWHNNMR 152 Query: 148 --GVPQAPLAVTGETEKTGTMVRFWPSLETF--TNVTEFEYEILAKRLRELSFLNSGVSI 203 G P+ +G+ K T V F P LE F +T +L KR+ +++ S V + Sbjct: 153 TRGEPEI-TEFSGKDAKDFTKVSFSPDLEKFEMEKLTASMTRVLKKRVYDVAGCLSDVQV 211 Query: 204 RLRDKRDGKEDHFHYEGGIKAFV-----EYLNKNKTPIHPNIFYFSTEKDGIGVEVALQW 258 L K K +E IK F ++K P + S+ D I V +W Sbjct: 212 TLNGK---KLPISGFESYIKTFRYSTTNNPVSKTAKPSKDSDDAASSGSDYIYSRVNKRW 268 Query: 259 NDGFQEN-----IYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 313 G + F N + GG+H+ + R + +++K K ++S + Sbjct: 269 KIGVLPSDVGFVQVSFVNGMSALRGGSHVGYVSDQICRRVAEHVNK----KFPELSVSTA 324 Query: 314 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVG 373 + + ++ ++ +P F SQ K+ + S ++E L + +L + +V Sbjct: 325 QVKPHMAIFINCQIENPTFDSQMKEFMTSRPPTFGSTCVLSERLLKLVLSDSG----IVE 380 Query: 374 KIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS---ELYLVEGDSAGG 430 +++ +ARAR+ A ++++ + +P KL D A S L L EGDSA Sbjct: 381 RVVQSARARQRAALLKKVSSTRAKSSSVNVP-KLEDANLAGGARSSECSLILTEGDSAKA 439 Query: 431 SAKQGR---NRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI----GRDEY 483 A G R + PL+GK+LNV A ++ + E A L T LG + G +E Sbjct: 440 LAVAGLAVVGRDQYGVFPLRGKLLNVRDATVAQLGKNAEFAHLCTILGLRMDEHYGTEEA 499 Query: 484 NPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERG 525 KLRY +I MTD D DGSHI+ LL F+ PE+++ G Sbjct: 500 R-QKLRYGRVIAMTDQDHDGSHIKGLLFNLFHTFWPELLKEG 540 >UniRef50_C1E5N4 DNA topoisomerase 2 n=1 Tax=Micromonas sp. RCC299 RepID=C1E5N4_9CHLO Length = 1459 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 144/540 (26%), Positives = 242/540 (44%), Gaps = 67/540 (12%) Query: 35 GLHHMVFEVVDNAIDEALAGHCKEIIVTIHAD-----NSVSVQDDGRGIPTGIHPEEGVS 89 GL+ + E++ NA D + +VT+ D + V +DG GIP +H EEGV Sbjct: 105 GLYKIFDEILVNATDNKVRDPS---MVTLRVDIDQEAGCIRVYNDGNGIPVEMHKEEGVY 161 Query: 90 AAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQ-----REGKIHRQI 144 E+I L ++DN KV+GG +G G + N S E V++ RE + +RQ+ Sbjct: 162 VPELIFGHLLTSSNYNDNEKKVTGGRNGYGAKLANIFST--EFVVETCDGSRERR-YRQV 218 Query: 145 YEHGVPQA--PLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVS 202 +++ + + P+ + T + F P L F N+TE E + +A + + + Sbjct: 219 FKNNMGEKCEPVVTKCKPTDNWTCITFKPDLAKF-NMTELEDDTVALMCKRVYDAAGNI- 276 Query: 203 IRLRDKRDGKEDHFHYEG---GIKAFVEYLN------KNKTPIHPNIFYFSTEKDGIGVE 253 GK G +K F +Y++ +N ++ + D V Sbjct: 277 --------GKNTKVFLNGERLKVKGFSDYVDLYLEGRENAPKVYEKV------NDRWEVC 322 Query: 254 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 313 V + + FQ+ F N I GGTH+ + L + K+ S K +A Sbjct: 323 VTISDSGNFQQ--VSFVNGICTMKGGTHVNQVADEVAGKLLEKIKKKEKSCKNLKAA--- 377 Query: 314 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVG 373 + L V+ + +P F SQTK+ L + + ++Y + +++ Sbjct: 378 HVKNHLWVFVNALIENPAFDSQTKETL---------NTRASNFGSKYEASDKVIKQMMNS 428 Query: 374 KIIDAARAREAARRAREMTRRKG--ALDLAGLPGKLADCQE---RDPALSELYLVEGDSA 428 I++ + + ++++EM + G A L G+P KL D + R+ L L EGDSA Sbjct: 429 GIVEQILSWASFKQSKEMKKSDGKKATRLTGIP-KLDDANDAGGRNSEHCTLILTEGDSA 487 Query: 429 GGSAKQGRN---RKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNP 485 A G + R + PL+GK+LNV A D+++++ E+ + LG G + Sbjct: 488 KALAVSGLSVVGRDRYGVFPLRGKLLNVRDASHDQIMNNAEINHIKQILGLRHGTTYESA 547 Query: 486 DKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVE-RGHVYIAQPPLYKVKKGKQEQ 544 LRY I+IMTD D DGSHI+ LL+ F + P +++ G + P+ K KGKQ + Sbjct: 548 KSLRYGHIMIMTDQDHDGSHIKGLLINFLHAHFPSLLKIPGFLVEFITPIIKATKGKQSK 607 >UniRef50_A0C0L0 DNA topoisomerase 2 n=3 Tax=Paramecium tetraurelia RepID=A0C0L0_PARTE Length = 1274 Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 134/530 (25%), Positives = 240/530 (45%), Gaps = 48/530 (9%) Query: 35 GLHHMVFEVVDNAIDEAL--AGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAE 92 G + E++ NA D K+ + + N +++++DG IP IH E + E Sbjct: 55 GFFKIFDEILVNAADNLQRDTRQHKQSYIKVDIGNEITIKNDGLPIPVEIHKEYQIYVPE 114 Query: 93 VIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQA 152 +I V G FDD+ +V GG +G G + N S + L + + ++ + + Sbjct: 115 LIFGVFLTGSNFDDSEKRVVGGRNGYGAKLTNVYSTEFTLEVCDGNNYFKLVWNNNMSNK 174 Query: 153 PLAVTGETEKTGTM-VRFWPSLETFTNVTEFEYE---ILAKRLRELS-FLNSGVSIRLRD 207 + + +K + + + P + F + E E + +L +R+ +L+ S +++ L D Sbjct: 175 QIPTIKQLKKDPYVSISYKPDYKRF-GMKEIEADTQALLTRRVYDLAGIYGSKINVYLND 233 Query: 208 KRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIY 267 ++ I +F +Y++ P I F + EV + ++ +++ Sbjct: 234 EK----------IKINSFQKYVDL-YLPTEGAIKIFDKDMTTPRWEVVVSYSPTQFQHV- 281 Query: 268 CFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKV 327 F N I GGTH+ + + + M+ K +V ++ L ++ + Sbjct: 282 SFVNAIYTAKGGTHVNYVTDKIIQEIQNEMNNNKKYKSIEVQKY--QIKQSLWVFINCLI 339 Query: 328 PDPKFSSQTKDKLV--------SSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAA 379 +P F SQTK+ + SSE K V ++ ++ L + TD ++ I A Sbjct: 340 DNPTFDSQTKENMTTKVSEFGGSSEEKFKVTEKFSKALIK------TD---IIETIFQQA 390 Query: 380 RAREAARRAREMTRRKGALDLAGLPGKLADCQE---RDPALSELYLVEGDSAGGSAKQGR 436 +A+ A+ +++ K L G+ KL D + ++ L L L EGDSA A G Sbjct: 391 KAKADAKLNKQLKGTKTG-RLHGIE-KLDDANDAGKKNSELCTLILTEGDSAKALAMAGI 448 Query: 437 N---RKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSI 493 + R + PLKGK+LNV +A ++L ++E+ LI +G R + LRY S+ Sbjct: 449 DIVGRDRYGVFPLKGKLLNVREASLKQILQNEEIENLIKIIGLQKERQYTDLKSLRYGSV 508 Query: 494 IIMTDADVDGSHIRTLLLTFFYRQMPEIVE-RGHVYIAQPPLYKVKKGKQ 542 +IMTD D+DGSHI+ L++ F + P +V+ G + PL K KG Q Sbjct: 509 MIMTDQDIDGSHIKGLIINFIHHFWPSLVKYSGFLKEFVTPLIKATKGNQ 558 >UniRef50_Q8SS63 DNA topoisomerase 2 n=1 Tax=Encephalitozoon cuniculi RepID=Q8SS63_ENCCU Length = 1144 Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 159/568 (27%), Positives = 268/568 (47%), Gaps = 77/568 (13%) Query: 25 MYIGDTDDG----------TGLHHMVFEVVDNAIDEALAGHCKEII-VTIHAD-NSVSVQ 72 MY+ D ++G GL+ + E++ NA D + ++I V+I + N +SV Sbjct: 35 MYVWDEENGRMVYKSIEYVPGLYKIFDEIIVNAADNKIRDPKMDVIKVSIDPEGNEISVY 94 Query: 73 DDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLEL 132 ++G+GIP IH EE V E+I L ++D+ KV+GG +G G + N S+ E Sbjct: 95 NNGKGIPVRIHKEENVYVPELIFGNLLTSSNYNDDEKKVTGGRNGYGAKLCNIFSK--EF 152 Query: 133 VIQREG----KIHRQIY--EHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEI 186 V++ K +RQ Y GV + P ++ T+ T + F P L F +T + +I Sbjct: 153 VVETADCEVKKYYRQRYRDNMGVKEDP-EISRYTKGDFTKITFKPDLRRF-KMTRLDDDI 210 Query: 187 LA---KRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYF 243 +A KR+ +L+ + V I L +KR +K F EY+ P + Sbjct: 211 VALLRKRVYDLAGIVKDVKIFLNEKRIE----------VKGFKEYVKLYIPPGASVVHQV 260 Query: 244 STEKDGIGVEVALQWND-GFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGY 302 ++ E+AL ++ FQ+ F N I GGTH+ + R ++ + E Sbjct: 261 INDR----WELALTTSEEQFQQ--VSFVNGICTTKGGTHV---NHVVERIVDPLV--EAI 309 Query: 303 SKKAK-VSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLV--SSEVKSAVEQQMNELLAE 359 KK K +S R + ++ + +P F SQTK+ L +S S E M + + Sbjct: 310 QKKEKGLSVRPFQVRSCMFVFINSLIDNPAFDSQTKENLTLRASAFGSKCEP-MGDFVKS 368 Query: 360 YLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALD--LAGLPGKLADCQERDPAL 417 + P +V KI A+A+++ +++ + GA L+G+P KL D + Sbjct: 369 IIKNTP-----IVQKITSFAKAKQS----QQLKKTDGAKTSRLSGIP-KLEDANFAGTSR 418 Query: 418 SE---LYLVEGDSAGGSAKQGRN---RKNQAILPLKGKILNVEKARFDKMLSSQEVATLI 471 S+ L L EGDSA A G + R + PL+GK+LNV +A +++ + E++++ Sbjct: 419 SKDCTLILTEGDSAKTLAVAGLSVVGRDAYGVFPLRGKLLNVREASHKQIMENAEISSIK 478 Query: 472 TALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTF---FYRQMPEIVERGHVY 528 LG + + LRY ++IMTD D DGSHI+ L++ F FY + +I + Sbjct: 479 KILGLQHNKVYEDVSSLRYGHVMIMTDQDHDGSHIKGLIINFLDHFYPSLLKIPGFLQEF 538 Query: 529 IAQPPLYKVKKGKQEQYIKDDEAMDQYQ 556 I P + KKG+ ++D + +Y+ Sbjct: 539 IT-PIIRATKKGQ----VRDFFTLPEYE 561 >UniRef50_B7G2K9 DNA topoisomerase 2 (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7G2K9_PHATR Length = 1165 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 142/558 (25%), Positives = 246/558 (44%), Gaps = 67/558 (12%) Query: 16 LDAVRKRPGMYIGDTDDGTGLHHMVF--------------------EVVDNAIDEALAGH 55 L+ V RP MY+G + + V E++ NA D L H Sbjct: 11 LEHVLLRPSMYVGSNEKAQPIACWVPDPIPTPPTEELLMKTTSVFDEILVNAADN-LQRH 69 Query: 56 ---CKEIIVTI-----HADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDN 107 C I V I + D + V++DG+GIP +H +EG+ E++ L G FDDN Sbjct: 70 PDSCTRIDVIIDPGSDNRDPFIRVRNDGKGIPVQVHQKEGMYVPEMLFGHLLTGSNFDDN 129 Query: 108 SYKVSGGLHGVGVSVVNALSQKL--ELVIQREGKIHRQIYEHGVPQA--PLAVTGETEKT 163 +++GG HG G + N S+ E + R+ +RQ + + A P V + T Sbjct: 130 EKRLTGGRHGFGAKLTNIFSKSFTVETLDSRKRLKYRQTWSSNMTNASSPEIVEVPADAT 189 Query: 164 G-TMVRFWPSLETFTN------VTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHF 216 T V F P + TN +++ +Y ++ +R+ +++ ++G RLR +G + Sbjct: 190 DYTCVSFVPDVARLTNDASALSISKEDYALMCRRVLDVAGCSAG---RLRVTLNGVDVTM 246 Query: 217 HYEGGIKAFVE-YLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQ 275 G + Y ++ P+ F V V L F+ + F N + Sbjct: 247 ---GSFPDYARLYRKQDSLPV-----CFDAINSRWTVGVGLSETGSFE--MVSFVNGMAT 296 Query: 276 RDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQ 335 GGTH+ + + + ++K + ++++ G R ++V ++ + +P F SQ Sbjct: 297 SRGGTHVNSILQQVIKKIQEKIEKTD-PELVQMASQGVIRRHLFVSVAAL-IENPTFDSQ 354 Query: 336 TKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKI-VVGKIIDAARAREAARRAREMTRR 394 K+ L SS ++E + +L++ + +V +I AA++R+ A + + + Sbjct: 355 MKECLTSSPADFGSSFSLSESFIKSVLQSEEEGGPGIVEEIRRAAQSRQQATLLKVIGGK 414 Query: 395 KGALDLAGLPGKLADCQE---RDPALSELYLVEGDSAGGSAKQGR---NRKNQAILPLKG 448 L +P KL D + + L L EGDSA A G R + PL+G Sbjct: 415 TSKRQLLSIP-KLEDAHHAGTKSGSECTLILTEGDSAKALAVAGLEVIGRARYGVFPLRG 473 Query: 449 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPD---KLRYHSIIIMTDADVDGSH 505 K+LNV +A +M + EV L +G + + KLRY +++MTD D DGSH Sbjct: 474 KLLNVREAAVSQMAKNAEVTALCAIIGLDFDKTYETIEERRKLRYGKVMLMTDQDTDGSH 533 Query: 506 IRTLLLTFFYRQMPEIVE 523 I+ L++ FF P +++ Sbjct: 534 IKGLVMNFFRYFWPNLLK 551 >UniRef50_C5KAQ6 DNA topoisomerase 2 n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5KAQ6_9ALVE Length = 1579 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 143/546 (26%), Positives = 250/546 (45%), Gaps = 57/546 (10%) Query: 35 GLHHMVFEVVDNAID--EALAGHCKEIIVTIHADNS-VSVQDDGRGIPTGIHPEEGVSAA 91 GL+ + E++ NA D + H I V I A+N + V ++G+G+P IH E V Sbjct: 66 GLYKIFDEILVNAADNLQRDPKHMNTIKVDIDAENGFIKVYNNGKGLPIQIHKEHHVYVP 125 Query: 92 EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVI--QREGKIHRQIYEHGV 149 E++ L +DD KV+GG +G G + N S+K + + K+++Q +E + Sbjct: 126 ELVFGHLLTSDNYDDKEKKVTGGRNGYGAKLSNIFSKKFLITTADRTRKKLYKQQFEKSM 185 Query: 150 PQAPLAVTGETEKTG-TMVRFWPSLETFTNVTEFEYEI---LAKRLRELSFLNSGVSIRL 205 + V + +K T V+FWP LE F +T + +I ++KR+ +++ + S + Sbjct: 186 QKKKEPVITDYDKEDFTCVQFWPDLEKF-GMTHLDADIVSLMSKRVIDVA--GTSASKKC 242 Query: 206 RDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIF--------YFSTEKDGIGVEVALQ 257 + +GK K + E + P I+ Y S V+V+ + Sbjct: 243 KVYLNGKRVPI---SSFKDYAELYLTGEWVDAPKIYEKVARANVYVSCGH----VQVSDR 295 Query: 258 W----------NDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAK 307 W G Q F N+I GGTH+ + +NA + K K Sbjct: 296 WEVLVTLSDPAGGGGQFQQVSFANSINTVKGGTHV---NHVAEQIVNAVLKKAQTKNKGG 352 Query: 308 VSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTD 367 + + + V+ + +P F SQTK+ L K + ++E + +L + Sbjct: 353 MELKPFQVKNHMWLFVNALIENPTFDSQTKETLTLKVAKFGSKCVLSEGTMKKVLSSG-- 410 Query: 368 AKIVVGKIIDAARAREAARRAREMT--RRKGALDLAGLPGKLADCQERDPALSE---LYL 422 +V ++++ A+ ++ A ++ G + G+P KL D + S+ L L Sbjct: 411 ---IVDQVVNWAKFKQTATLQSKIKVGGTGGQTRIFGVP-KLEDANDAGGRYSDRCTLIL 466 Query: 423 VEGDSAGGSAKQGRN---RKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIG 479 EGDSA A G R + PL+GK+LNV +A + + + ++E+ ++ +G Sbjct: 467 TEGDSAKALAVAGLGVIGRDKYGVFPLRGKVLNVREASYKQTVDNKEIQAILKIIGLE-P 525 Query: 480 RDEYNPDK-LRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVE-RGHVYIAQPPLYKV 537 R Y+ K LRY SI++MTD D+DGSHI+ LL+ + P +++ RG + P+ K Sbjct: 526 RKAYDGVKGLRYGSIMVMTDQDLDGSHIKGLLINLVHHWWPGLLQTRGFMKEFVTPIVKC 585 Query: 538 KKGKQE 543 KG++E Sbjct: 586 VKGRRE 591 >UniRef50_A8PTE9 DNA topoisomerase 2 n=1 Tax=Malassezia globosa CBS 7966 RepID=A8PTE9_MALGO Length = 1376 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 150/575 (26%), Positives = 246/575 (42%), Gaps = 82/575 (14%) Query: 7 SSSIKVLKGLDAVRKRPGMYIG----------------------DTDDGTGLHHMVFEVV 44 S + + L L+ V +RP YIG DT G + + E++ Sbjct: 24 SDTYQKLSQLEHVLRRPDTYIGSVERRTETMWVYDVAKEQMAYRDTSYVPGFYKIFDEIL 83 Query: 45 DNAIDEALAGHCKEII-VTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGG 102 NA D + + + VTI D ++SV ++G+GIP IH +E V E+I L Sbjct: 84 VNAADNKVRDPSMDTMKVTIDKDAGTISVWNNGQGIPVEIHEKEQVYIPELIFGNLLTSS 143 Query: 103 KFDDNSYKVSGGLHGVGVSVVNALSQKLELVI-----QREGKIHRQIYEHGVPQAPLAVT 157 +DD+ KV+GG +G G + N S E ++ QRE K + H + +T Sbjct: 144 NYDDDEAKVTGGRNGFGAKLTNIYST--EFIVETADKQRELKYKQVFSNHMHDKDKPKIT 201 Query: 158 GETEKTG-TMVRFWPSLETF--TNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKED 214 T K T + F P L F ++ +L KR+ F +G + Sbjct: 202 KNTRKEEYTCITFKPDLSLFHMDSIHPDTEALLMKRV----FDMAGTRV----------- 246 Query: 215 HFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIP 274 GG N P P I Y ++E G EV +DG + F NNI Sbjct: 247 -IRPHGG----------NPVP-RPTIVYDASEDHGRLWEVGFAVSDGTARQV-SFVNNIA 293 Query: 275 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 334 GG H+ + + + ++ K K A + A + R+ L V+ ++ +P F S Sbjct: 294 TIKGGKHVDHVESQIVERIMEHLKKG--KKDAPIKA--NHIRQQLWIFVNCQIVNPTFDS 349 Query: 335 QTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRR 394 QTK+ L + + +++++ + K++ +ID ++ + R++ Sbjct: 350 QTKETLT---------LKPSAFGSKWVMPDDFAKKVLKSGVIDNVQSIVQYHQDRQLQAT 400 Query: 395 KGALDLAGLPGKLADCQ---ERDPALSELYLVEGDSAGGSAKQGRN---RKNQAILPLKG 448 G KL D + A L L EGDSA G A G + R + PL+G Sbjct: 401 DGRKRSRVSVTKLEDANWAGTKRSAECTLILTEGDSAKGLAVSGLSEVGRDAYGVFPLRG 460 Query: 449 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRT 508 K+LNV +A +D++ + E+ + LG G+ D LRY S++IMTD D DGSHI+ Sbjct: 461 KLLNVREATYDQIKKNTEIKNIKEILGLQHGKSYSTVDGLRYGSLMIMTDQDFDGSHIKG 520 Query: 509 LLLTFFYRQMPEIVERGHVYIA-QPPLYKVKKGKQ 542 L++ + P +++ + + P+ K KG++ Sbjct: 521 LIINYLDHFYPSLLKIPNFLVEFITPIIKATKGQE 555 >UniRef50_A5E7X7 DNA topoisomerase 2 n=4 Tax=Saccharomycetaceae RepID=A5E7X7_LODEL Length = 1492 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 155/581 (26%), Positives = 250/581 (43%), Gaps = 66/581 (11%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTDDG----------------------TGLHHMVFEVV 44 S + + L L+ + KRP YIG + GL+ + E++ Sbjct: 80 SETYQKLSQLEHILKRPDTYIGSVEKTRTEMWCFDVESESMKFQEVTIVPGLYKIFDEIL 139 Query: 45 DNAIDEALAG-HCKEIIVTIHADNSV-SVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGG 102 NA D + K I V I +N+V V +DG+GIP IH +E + E+I L Sbjct: 140 VNAADNKIRDPSMKNIKVKIDPENNVIQVMNDGKGIPVEIHTKEKMYIPELIFGNLLTSS 199 Query: 103 KFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQ--REGKIHRQIYEHGVPQA--PLAVTG 158 +DD+ KV+GG +G G + N S + E+ GK+++Q++ + + P T Sbjct: 200 NYDDDQKKVTGGRNGFGAKLCNIFSTQFEVETADLNTGKLYKQVWTDNMTKVGKPKITTL 259 Query: 159 ETEKTGTMVRFWPSLETF--TNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHF 216 +T+K T + F P L+ F ++ E +L +R+ +L +I L DKR Sbjct: 260 KTKKEYTKITFMPDLQKFGMDSLDEDLLSVLRRRVYDLCGTVRNCNIYLNDKRLS----- 314 Query: 217 HYEGGIKAFVEYLNK---NKTP-------IHPNIFYFSTEKDGIGVEVALQWNDGFQENI 266 KA+VE K ++P P E EVA +DG N Sbjct: 315 --VNSFKAYVEMYVKAIRERSPEPEGDAESKPATTTIVHEVFNDRWEVAFAVSDG-NFNQ 371 Query: 267 YCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVK 326 F N+I GGTH+ + L + K KK K+ + R+ + ++ Sbjct: 372 VSFVNSIATTAGGTHVKYVSDQIITKLVETLSKREKGKK-KLMIKPQEVRDNMFIFINSL 430 Query: 327 VPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAAR 386 + +P F+SQTK++L + + +++ + E L+ +I+ I D RA A Sbjct: 431 IENPAFTSQTKEQLTTKPSQFGGKEKF--IATENLIN-----RILKTGIADKIRAIANAN 483 Query: 387 RAREMTRRKGALDL-AGLPGKLADCQE---RDPALSELYLVEGDSAGGSAKQGRN---RK 439 + + + G+ L L D + +D L L EG SA A G R Sbjct: 484 EDKALQKADGSKKLRIKNQVNLVDANKAGTKDGLKCTLILTEGLSALNLAVAGLTVVGRD 543 Query: 440 NQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR--DEYNPDKLRYHSIIIMT 497 PL+GK+LNV +A D++ + E+ L +G + + N LRY I+IMT Sbjct: 544 YYGCFPLRGKLLNVREASADQVSKNIEINALKQIIGLQHKKVYTQENIKSLRYGHIMIMT 603 Query: 498 DADVDGSHIRTLLLTFFYRQMPEIVE-RGHVYIAQPPLYKV 537 D D DGSHI+ L++ F P +++ G + P+ KV Sbjct: 604 DQDQDGSHIKGLIINFLETSFPGLLDIPGFLLQFITPIVKV 644 >UniRef50_D1AIT2 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AIT2_SEBTE Length = 226 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 84/232 (36%), Positives = 136/232 (58%), Gaps = 11/232 (4%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 MS +D+ SI VL ++ +RK+P M+IG GL ++V+E++DN ++EAL G C I Sbjct: 1 MSEIFDAKSIAVLGIMEGIRKKPEMFIGSVS-AEGLCNLVWEIIDNCVNEALEGFCNTIK 59 Query: 61 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 V + +N + V D+GRG+P + + G S EVI+T + G+ YK+S + G+ Sbjct: 60 VRLLKNNIIEVSDNGRGLPVDFYEKAGKSKLEVILTGKYIRGELTGGIYKLSRKKYKGGL 119 Query: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKT--GTMVRFWPSLETFTN 178 VN LS+ LE V+ ++GK+ Q Y GVP + TGE + GT++RF E F Sbjct: 120 VSVNGLSETLEAVVIKDGKVWYQKYHKGVPSGDIKKTGEKSEYIHGTVIRFRADREIFGE 179 Query: 179 VTEFEYEILAKRLRELSFLNSGVSIRLRDKRD---GKEDHFHYEGGIKAFVE 227 + E++YEIL +L+E+ G+ + L D+R+ GK + F++ G I+ F++ Sbjct: 180 L-EYDYEILLAKLKEI----RGIKVILCDERNEAAGKTESFYFNGEIREFLK 226 >UniRef50_D1ZCL6 DNA topoisomerase 2 n=6 Tax=Sordariomyceta RepID=D1ZCL6_SORMA Length = 1915 Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 138/555 (24%), Positives = 243/555 (43%), Gaps = 64/555 (11%) Query: 13 LKGLDAVRKRPGMYIGDTDDG----------------------TGLHHMVFEVVDNAIDE 50 L L+ + KRP YIG + GL+ + E++ NA D Sbjct: 133 LTQLEHILKRPDTYIGSVERSEQKMWVFNKATGLMENRQISFVPGLYKIFDEILVNAADN 192 Query: 51 ALAGHCKEII-VTIHADNS-VSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNS 108 + + V+I+ ++ +SV+++G+GIP IH E E+I L AG FDDN Sbjct: 193 SQRDSSMTFLKVSINRESGEISVENNGKGIPVEIHGTEKCYVPELIFGHLLAGSNFDDNE 252 Query: 109 YKVSGGLHGVGVSVVNALSQKLELVIQRE--GKIHRQIYEHGVPQ-APLAVTGETEKTGT 165 K GG +G G + N S++ L Q GK ++Q + + + + +T Sbjct: 253 KKTVGGRNGYGAKLTNIFSREFILECQDSVNGKRYKQTWTDNMSKMSTPKITSNKAADFV 312 Query: 166 MVRFWPSLETFTNVTEFEYEI---LAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGI 222 + F P F + ++ L +R+ +++ SG+ + L +G+ +++ Sbjct: 313 RITFRPDFSKFGMADGIDDDLEALLYRRVYDMAGTVSGIKVWL----NGEHLKLNFKTYC 368 Query: 223 KAFVEYLNKNKTPIH------PNIFYFSTEK-DGIGVEVALQWNDG-FQENIYCFTNNIP 274 + + + K + + P F ++ +G EV +DG FQ+ F NNI Sbjct: 369 GLYAKAIAKERDEVADGEDVTPATVIFEQQRSEGKLWEVGFTVSDGSFQQ--VSFVNNIA 426 Query: 275 QRDGGTHLAGFRAAMTRTLNAYMD-KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFS 333 GG+H+ + L + K+G K + + + ++ + +P FS Sbjct: 427 TTSGGSHVNYIADQIIEVLMKELQRKKGKGHGLKTA----NVKNQFFIFINCLIDNPAFS 482 Query: 334 SQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTR 393 SQTK++L + + + Q+ + + K+ + ID + +R +++ + Sbjct: 483 SQTKEQLTTKPARFGSKCQLGDQFLK---------KVRQSEAIDNLLSFADKKRDKDLAK 533 Query: 394 RKGALDLAGLPGKLADCQERDPALSE---LYLVEGDSAGGSAKQGR---NRKNQAILPLK 447 G+ KL + S+ L L EGDSA G A GR + + PL+ Sbjct: 534 NDGSKRKRISNDKLIEANYAGGKYSQECTLILTEGDSARGLAVAGRAILDPNRIGVFPLR 593 Query: 448 GKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIR 507 GK+LNV A D++L ++EV + LG G+ + LRY ++IM D D+DGSHI+ Sbjct: 594 GKMLNVRDASADQILKNKEVENIKKFLGLKHGKVYTDTKDLRYGHLMIMADQDLDGSHIK 653 Query: 508 TLLLTFFYRQMPEIV 522 LL+ FF Q P ++ Sbjct: 654 GLLINFFECQFPSLL 668 >UniRef50_O24308 DNA topoisomerase 2 n=3 Tax=fabids RepID=TOP2_PEA Length = 1462 Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 143/555 (25%), Positives = 242/555 (43%), Gaps = 80/555 (14%) Query: 16 LDAVRKRPGMYIGDTDDGT--------------------GLHHMVFEVVDNAIDEALAGH 55 L+ + RP Y+G + T GL+ + E++ NA D Sbjct: 29 LEHILLRPDTYVGSIEKHTQNLWVYENDEMVHRAVSYVPGLYKIFDEILVNAADNKQRDP 88 Query: 56 CKEII-VTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSG 113 + + VTI + N+VSV ++G G+P IH EE V E+I L +DDN K +G Sbjct: 89 SMDSLKVTIDPEANTVSVYNNGDGVPVEIHQEEKVYVPELIFGHLLTSSNYDDNVKKTTG 148 Query: 114 GLHGVGVSVVNALSQKLELVIQ----REGKIHRQIYEH--GVPQAPLAVTGETEKTGTMV 167 G +G G + N S E +I+ R K ++Q++ + G P+ + + T V Sbjct: 149 GRNGYGAKLTNIFST--EFIIETADGRRLKKYKQVFSNNMGTKCEPVITKCKASENWTKV 206 Query: 168 RFWPSLETFTNVTEFEYEILA---KRLRELSF---------LNSGVSIRLRDKRDGKEDH 215 F P LE F + E +++A KR+ +++ LN G IR + RD + Sbjct: 207 TFKPDLEKF-KMAYLEEDVVALMKKRVLDMAGCFGKTVKVELN-GTLIRFKSFRDYAD-- 262 Query: 216 FHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDG-FQENIYCFTNNIP 274 F++ K+K P I K G E+ + +DG FQ+ F N+I Sbjct: 263 --------LFLKCAEKSKPMPLPRIH----AKVGDRWEICISLSDGQFQQ--VSFVNSIA 308 Query: 275 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 334 GGTH+ +T + Y+ + KK + + L V+ + +P F S Sbjct: 309 TIKGGTHVD----YITNQITTYIMNKVNKKKKDANVKAHTVKNHLWVFVNSLIDNPAFDS 364 Query: 335 QTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRR 394 QTK+ L + + + + E + + + I+D + ++++++ + Sbjct: 365 QTKETLTTRQASFGSKCDVPESMLK---------DVEKSGIVDTLLSWADFKQSKDLKKT 415 Query: 395 KGALDLAGLPGKLADCQE---RDPALSELYLVEGDSAGGSAKQGRN---RKNQAILPLKG 448 G K D E R+ L L EGDSA A G + R + + PL+G Sbjct: 416 DGTKTQRLRGCKAEDANEAGGRNSEKCTLILTEGDSAKALAMAGLSVVGRDHYGVFPLRG 475 Query: 449 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRT 508 K+LNV +A +++ ++E+ + LG ++ N LRY ++IM D D DGSHI+ Sbjct: 476 KLLNVREASSKQIMDNEEIQNIKKILGLQQNKEYTNVKSLRYGHLMIMADQDHDGSHIKG 535 Query: 509 LLLTFFYRQMPEIVE 523 LL+ F + P +++ Sbjct: 536 LLINFIHSFWPSLLK 550 >UniRef50_Q5KSK9 DNA topoisomerase 2 n=5 Tax=Basidiomycota RepID=Q5KSK9_COPCI Length = 1572 Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 154/600 (25%), Positives = 265/600 (44%), Gaps = 89/600 (14%) Query: 13 LKGLDAVRKRPGMYIGDTDDGT----------------------GLHHMVFEVVDNAIDE 50 L L+ + KRP YIG + T G +V E++ NA D Sbjct: 106 LTQLEHILKRPDSYIGSIETITTPMWTYDSETKRMVHREVKYVPGFFKIVDEILVNAADN 165 Query: 51 ALAGHCKEII-VTIHADN-SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNS 108 + + + VTI + ++SV ++GRGIP IH +E + E+I L +DD+ Sbjct: 166 KINDPSMDTLKVTIDVEEGTISVYNNGRGIPIEIHSKEKMYIPEMIFGHLLTSTNYDDDE 225 Query: 109 YKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTG---- 164 K++GG +G G + N S LE ++ K Q Y+ ++ G+ + T Sbjct: 226 KKLTGGRNGYGAKLANIYS--LEFTVETADKNTSQKYKQTWTDN-MSKCGKAKITKNTRG 282 Query: 165 ---TMVRFWPSLETF--TNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYE 219 T + F P L+ F ++ E +L +R+ +++ V + L D+R ++ Y Sbjct: 283 EEYTRITFRPDLKRFGMNSIDEDTVSLLKRRVFDMAGTVKDVKVFLNDERLKIKNFKQY- 341 Query: 220 GGIKAFVEYLNK------------NKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIY 267 ++ +V + + +T IH I D + L FQ Sbjct: 342 --VEMYVSSVQEAAAEKSGGAAQPKQTVIHEQI------SDRWEIAYTLSTEGTFQH--V 391 Query: 268 CFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKV 327 F N+I GGTH+ +++ L + K+ K + R + V + Sbjct: 392 SFANSIATSKGGTHVNYIADQISKALVTSISKKNKGATVKPAQI----RNHMWLFVKSLI 447 Query: 328 PDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAAR--AREAA 385 +P F SQTK+ L K + +++ + + ++ +V +++ A+ A + Sbjct: 448 VNPTFDSQTKELLTLPSSKFGSKPTISDEFIKKVAKSG-----IVDNVLNWAKFKADQQM 502 Query: 386 RRAREMTRRKGALDLAGLPGKLADCQE---RDPALSELYLVEGDSAGGSAKQGRN---RK 439 +RA + T+R L LA KL+D R L L EGDSA A G R Sbjct: 503 KRA-DGTKRSRLLGLA----KLSDANNAGTRHAQDCTLILTEGDSAKALAIAGLGVVGRD 557 Query: 440 NQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDA 499 N + PL+GK+LNV +AR D+++ ++E+ + +G +D N LRY ++IMTD Sbjct: 558 NFGVFPLRGKLLNVREARHDQIMKNEEIQNIKKIMGLQHNKDYTNTSSLRYGRLMIMTDQ 617 Query: 500 DVDGSHIRTLLLTF---FYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQ 556 D DGSHI+ L++ F FY + +I + ++ P+ +VKKG + +KD + +Y+ Sbjct: 618 DHDGSHIKGLIINFLDHFYPSLLKIPDFLVEFVT--PIVRVKKGNK---VKDFFTIPEYE 672 >UniRef50_B0EP10 DNA topoisomerase 2 n=3 Tax=Entamoeba RepID=B0EP10_ENTDI Length = 1351 Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 142/525 (27%), Positives = 240/525 (45%), Gaps = 48/525 (9%) Query: 35 GLHHMVFEVVDNAIDEALAG-HCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEV 93 GL + E++ NA D I VTI NS++V ++G+GIP IH +E + E+ Sbjct: 64 GLFKIYDEILVNASDNFQRDPKMTTIKVTIEG-NSITVYNNGKGIPIEIHKKENIYIPEL 122 Query: 94 IMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVP--Q 151 I L + D+ KV+GG +G G + N S K + KI++Q +++ + + Sbjct: 123 IFGHLLTSSNYKDDDKKVTGGRNGYGAKLANIFSTKFSIETCDGKKIYKQTWKNNMSDKE 182 Query: 152 APLAVTGETEKTGTMVRFWPSLETF--TNVTEFEYEILAKRLRELSFLNSGVSIRLRDKR 209 P + + + T V F P + F + + +L +R +++ N G I + Sbjct: 183 EPEIESVKKVEEYTKVTFTPDYKRFQMKGMEDDARRLLIRRAYDIAGCNPGKRIWI---- 238 Query: 210 DGKEDHFHYEGGIKAFVEY--LNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIY 267 +GK+ F K F EY + PI +EK G ++ + + G I Sbjct: 239 NGKKVCF------KNFAEYARMYVGDEPI-------VSEKAGERWDICVCASKGEPMQI- 284 Query: 268 CFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKV 327 F N+I GGTH+ MT+ L M K K A++ + L V+ + Sbjct: 285 SFVNSINTSHGGTHVDYVTGLMTKYLAEKMKKLN-KKGAEIKPF--QIKNHLFVFVNSLI 341 Query: 328 PDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARR 387 +P F SQTK+ L + Q+N+ ++ L + ++ ++D A + Sbjct: 342 ENPAFDSQTKETL---------KTQVNKFGSKPTLSDKFFKELGKLSVVDDILAWAIKKG 392 Query: 388 AREMTRRKG--ALDLAGLPGKLADCQE---RDPALSELYLVEGDSAGGSAKQGRN---RK 439 ++ + G + G+P KL D + ++ L L L EGDSA A G + R Sbjct: 393 EMDLNKSGGKKTARITGIP-KLDDANKAGTKEGNLCTLILTEGDSAKTLAVSGLSVVGRD 451 Query: 440 NQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDA 499 + PL+GK LN + K+ +QE + +G G+ + ++LRY S++IM D Sbjct: 452 YYGVFPLRGKPLNAREIAPSKVKENQEFENIAKIMGLRYGKVYSSINELRYGSVMIMADQ 511 Query: 500 DVDGSHIRTLLLTFFYRQMPEIVERGHVYIA-QPPLYKVKKGKQE 543 D DGSHI+ LL+ +F+ P +++ + + P+ KVK+GKQE Sbjct: 512 DFDGSHIKGLLINYFHTFWPSLLKIDNFLVEFITPIVKVKRGKQE 556 >UniRef50_O41065 A583L protein n=7 Tax=Chlorovirus RepID=O41065_PBCV1 Length = 1061 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 145/522 (27%), Positives = 229/522 (43%), Gaps = 70/522 (13%) Query: 66 DNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNA 125 + SVSV +DG IP H E E+I L AG FDD + G +G+G N Sbjct: 80 EKSVSVHNDGCNIPIEKHDVEKCYIPELIFGHLLAGENFDDTEQRTGAGRNGIGSKATNI 139 Query: 126 LSQKLELVIQREGKIHRQIYEHGVP-QAPLAVTGETEKTGTMVRFWPSLETFTNVTEFE- 183 S+K ++ I K ++Q +E+ + + VT ++ + F+P E F + F+ Sbjct: 140 FSKKFDVEICDGKKKYKQSWENNMSVMSKPKVTTCSKDSYITTTFFPDFERF-GIDSFDD 198 Query: 184 --YEILAKRLRELSFLNSGVSIRLRDKR---DGKEDHFHYEGGIKAFVEYLNKNKTPIHP 238 I+ +R+ +++ + + V + L KR ED+F G NK +T Sbjct: 199 DTMSIMVRRVYDMAAVLNKVKVMLNGKRLEIKNTEDYFSLYVG--------NKTETK--- 247 Query: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 F + E +VA+ +D F F N++ R GGTH+ A+T + + Sbjct: 248 RAFEHTPE----NWDVAVSCSDEFTP--VSFVNSVVTR-GGTHVN----AVTDAVAKAVV 296 Query: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 + KK V R + V+ V +P F SQTK+ L S + + Sbjct: 297 EAAAKKKIVVKPMTVKGR--MFVFVNATVVNPTFDSQTKEILTSRNARVTLSD------- 347 Query: 359 EYLLENPTDAKIVVGKIIDAA----RAREAARRAREMTRRKGALD--LAGLPGKLADCQ- 411 T K VG ++DA R + +E+ + GA ++G+P KL D Sbjct: 348 -------TFVKKAVGVLLDAVIQETNVRTSLVDQKELKKTDGAKKSRVSGIP-KLNDAAW 399 Query: 412 --ERDPALSELYLVEGDSAGGSAKQGRN---RKNQAILPLKGKILNVEKARFDKMLSSQE 466 + L L EGDSA A G + R+ + PL+GK+LNV A + ++E Sbjct: 400 AGTNHSKMCTLILTEGDSAATLAIAGLSVVGRERYGVFPLRGKLLNVRDASVASITKNEE 459 Query: 467 VATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVE-RG 525 + L LG G+ + LRY ++IMTDADVDG+HI L++ FF+ P ++E G Sbjct: 460 ITALKQILGLQTGKVYKDTSSLRYGHVMIMTDADVDGTHISGLVMNFFHSCFPSLLEIPG 519 Query: 526 HVYIAQPPLYKVKKGKQ----------EQYIKDDEAMDQYQI 557 + P+ KKGK E ++K + +YQI Sbjct: 520 FLKKFITPIVVAKKGKDVREFYSLPDYEDWVKTTKDYSKYQI 561 >UniRef50_Q6Y3B0 Gyrase B (Fragment) n=1 Tax=Geobacter pelophilus RepID=Q6Y3B0_9DELT Length = 299 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 98/223 (43%), Positives = 128/223 (57%), Gaps = 32/223 (14%) Query: 275 QRDGGTH-LAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFS 333 Q GG H L + ++TRT+N Y +K + G D R + P+ Sbjct: 92 QHPGGGHALHRLKGSLTRTMNTYATANNLFEKRE----GGDLR---------RRPEGGAH 138 Query: 334 SQTKDKLVSSEVKSAVEQQMNELLAEYLLENP--TDAKIVVGKI----------IDAARA 381 + +++ V+ A + Q EL E + +P +A+ + G+ ID R Sbjct: 139 RGHFGEDLAAAVRGADQDQAGELGGERVRRDPDEREARHLSGRKPGHGQEDPGEID--RC 196 Query: 382 REAARRAREMTRRKGA----LDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRN 437 R A+E A L++ LPGKLADCQE+DPAL EL+LVEGDSAGGSAKQGR+ Sbjct: 197 GPGPRGAQERRANSPAAKVRLEVGTLPGKLADCQEKDPALCELFLVEGDSAGGSAKQGRD 256 Query: 438 RKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR 480 RK QAILPLKGKILNVEKARFDKML+SQE+ TLI+ALG IG+ Sbjct: 257 RKYQAILPLKGKILNVEKARFDKMLASQEIRTLISALGTSIGK 299 >UniRef50_UPI00016C4A69 DNA gyrase subunit B n=2 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4A69 Length = 294 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 93/294 (31%), Positives = 133/294 (45%), Gaps = 30/294 (10%) Query: 1 MSNSYDSSS-----IKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 55 M Y++S + V ++A+R RP M++G T GLH ++FE+V++A+ Sbjct: 1 MKCGYNTSDPIEADLPVEAPMEAIRLRPRMFLGGTGS-RGLHQLLFELVNDALGPLSGDP 59 Query: 56 CKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115 + V + AD V + DD P V A M+ LHA Sbjct: 60 AGVVRVALDADGFVEISDD-------CSPPLNVEAVFSRMSGLHAADS------------ 100 Query: 116 HGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLET 175 SV ALS++L +R G + + + G A G + G VRF P Sbjct: 101 ----RSVACALSEELTARARRSGAVPQCTFRRGQLHAETQFGGPPDDCGLTVRFRPDPAI 156 Query: 176 FTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTP 235 F F+ +I+ RL++ +FLNSGV I D+ G ED F Y GI +V++LN N+TP Sbjct: 157 F-GAARFDPDIIRNRLQQCAFLNSGVRIAFADESSGTEDVFEYPDGIADYVKWLNTNRTP 215 Query: 236 IHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 +H + F E G+ EV LQW F N R GGTH G RAA+ Sbjct: 216 VHAEVIAFDGEAGGVRYEVGLQWCADADALPVSFANGYCTRLGGTHTTGVRAAV 269 >UniRef50_Q9Y8G8 DNA topoisomerase 2 n=79 Tax=cellular organisms RepID=TOP2_PENCH Length = 1587 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 152/576 (26%), Positives = 247/576 (42%), Gaps = 64/576 (11%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTDDGT----------------------GLHHMVFEVV 44 S + L L+ + KRP Y+G T+ T GL+ + E+V Sbjct: 65 SEKYQKLTQLEHIIKRPDTYVGSTERTTQHMWVYSSESEGMEYREVSYVPGLYKIFDEIV 124 Query: 45 DNAIDEALAG-HCKEIIVTIHADNS-VSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGG 102 NA D + EI VTI ++ +SV ++GRGIP +H +E + E+I L Sbjct: 125 VNAADNKQNDKNMDEIRVTIDRESGEISVWNNGRGIPIEMHSKEKMYVPELIFGHLLTSS 184 Query: 103 KFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQ--REGKIHRQIY-EHGVPQAPLAVTGE 159 +DD KV+GG +G G + N S + + Q R+ K ++Q + E+ +T Sbjct: 185 NYDDTQMKVTGGRNGFGAKLCNVFSTEFTIETQDSRQKKKYKQTWTENMTKMGKAKITDA 244 Query: 160 TEKTGTMVRFWPSLETFTNV-TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHY 218 T V F P F + ++E L KR + V+++L R + Y Sbjct: 245 KGADYTKVTFKPDYAKFGMTGMDDDFEALVKRRVYDLAGTAKVAVKLNGSRIPIRNFKMY 304 Query: 219 EGGIKAFVEYLNKNKTPIHP----NIFYFSTEKDGIGVEVALQWNDG-FQENIYCFTNNI 273 ++ + + + + + + P I S + EV +DG FQ+ F N+I Sbjct: 305 ---MEMYTKAIRRERGDMGPAGKNEIITCSPDPRW---EVGFAVSDGAFQQ--VSFVNSI 356 Query: 274 PQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDA--REGLIAVVSVKVPDPK 331 GGTH+ + L E KK K AT A R + V+ + +P Sbjct: 357 AITSGGTHVNYIADQICSKL-----AEQVKKKNKNGATLKPAQIRNHIFIFVNALIVNPA 411 Query: 332 FSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIV---VGKIIDAARAREAARRA 388 F+SQTK++L + + + + + E + +L+ I+ K + + RR+ Sbjct: 412 FTSQTKEQLTTKQSQFGSKCVLEEDFYKKILKTEVMTNILHFAQQKADQMLKKTDGGRRS 471 Query: 389 REMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQ---AILP 445 R + + AG ++ L L EGDSA G A GR + P Sbjct: 472 RMNNPKLTDANKAGT---------KEGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFP 522 Query: 446 LKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSH 505 L+GK+LNV A FD++ +QE+ + +G ++ + LRY ++I TD D DGSH Sbjct: 523 LRGKLLNVRDASFDQIAKNQEIQNIKNFIGLQHKKEYTDTRGLRYGHLMITTDQDHDGSH 582 Query: 506 IRTLLLTFFYRQMPEIVERGHVYIA-QPPLYKVKKG 540 I+ LL+ F Q P +++ I P+ KV KG Sbjct: 583 IKGLLINFLQAQFPSLLKIPEFLIEFITPIVKVWKG 618 >UniRef50_UPI0000DB6EE1 PREDICTED: similar to DNA topoisomerase 2-alpha (DNA topoisomerase II, alpha isozyme) n=1 Tax=Apis mellifera RepID=UPI0000DB6EE1 Length = 1407 Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 147/528 (27%), Positives = 244/528 (46%), Gaps = 42/528 (7%) Query: 35 GLHHMVFEVVDNAIDEALAGHCKEII-VTIHADNSV-SVQDDGRGIPTGIHPEEGVSAAE 92 GL+ + E++ NA D + I + I+A+N++ SV ++G+GIP IH EE + Sbjct: 70 GLYKIFDEILVNAADNKQRDPKMDTIKIEINAENNIISVWNNGKGIPVVIHKEENMYVPT 129 Query: 93 VIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQK--LELVIQREGKIHRQIYEHGVP 150 +I L +DD KV+GG +G G + N S + +E + K +Q + + + Sbjct: 130 MIFGHLLTSSNYDDEEEKVTGGRNGYGAKLCNIFSHRFTVETASKEYKKCLKQTWSNNMG 189 Query: 151 QAPLA-VTGETEKTGTMVRFWPSLETFTNVTEFEYEILA---KRLRELSFLNSGVSIRLR 206 A + + + T V F P L F + + +I+A +R +++ GV + L Sbjct: 190 SASEPRIKDFSGEDFTKVIFSPDLSKF-KMQSLDDDIIALMSRRAYDIAASTRGVKVFLN 248 Query: 207 DKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWND-GFQEN 265 + ++ K +V++ K + N E G EVA+ +D GFQ+ Sbjct: 249 GTKIPVKN-------FKDYVDFYIKGREDDVGNPLKIVYENCGPRWEVAIALSDKGFQQ- 300 Query: 266 IYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSV 325 F N+I GG H+ + + L + K+ KA V+ + L ++ Sbjct: 301 -MSFVNSIATTKGGRHVDHVTELIVKQLTETLKKKN---KAGVTIKPFQIKNHLWIFINC 356 Query: 326 KVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAA 385 + +P F SQTK+ + + + KS + L+E + + T IV ++ A+ + A Sbjct: 357 LINNPTFDSQTKENM-TLQPKSFGSKCT---LSEKFITSVTKIGIVEA-VLTWAKFK-AD 410 Query: 386 RRAREMTRRKGALDLAGLPGKLADCQERDPALS---ELYLVEGDSA-----GGSAKQGRN 437 + +++ + L G+P KL D + S L L EGDSA G A GR+ Sbjct: 411 SQLQKLGPKSKQRKLQGIP-KLEDANDAGTNKSLECTLILTEGDSAKTMAVSGLAAIGRD 469 Query: 438 RKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRD-EYNPD--KLRYHSII 494 + I PL+GKILNV +A ++L + E+ LI LG + E D LRY ++ Sbjct: 470 K--YGIFPLRGKILNVREATHKQILENAEINNLIKILGLQYKKKYETREDLKTLRYGKMM 527 Query: 495 IMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQ 542 IMTD D DGSHI+ LL+ F + P +++ V P+ K KG Q Sbjct: 528 IMTDQDQDGSHIKGLLINFIHHNWPSLLKLNFVEEFITPIVKATKGNQ 575 >UniRef50_B1PL25 DNA gyrase subunit B (Fragment) n=79 Tax=Bacteria RepID=B1PL25_ECOLX Length = 67 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 67/67 (100%), Positives = 67/67 (100%) Query: 409 DCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 468 DCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA Sbjct: 1 DCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 60 Query: 469 TLITALG 475 TLITALG Sbjct: 61 TLITALG 67 >UniRef50_Q7YZS4 DNA topoisomerase 2 n=1 Tax=Physarum polycephalum RepID=Q7YZS4_PHYPO Length = 1498 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 139/539 (25%), Positives = 233/539 (43%), Gaps = 64/539 (11%) Query: 35 GLHHMVFEVVDNAIDEALAGHCKEII-VTIH-ADNSVSVQDDGRGIPTGIHPEEGVSAAE 92 GL+ + E++ NA D H ++ VTI A+N +S+ ++G+GIP +H +E V E Sbjct: 370 GLYKIFDEILVNAADNKQRDHKMNVLQVTIDPANNIISILNNGKGIPVQLHEKEKVYVPE 429 Query: 93 VIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREG--KIHRQIYEHGVP 150 +++ L G FDD KV+GG +G G + N S E+ K++RQ + + Sbjct: 430 LVLGTLLTGSNFDDKIAKVTGGRNGFGAKLTNIFSTSFEVETADAARHKLYRQSWSENMS 489 Query: 151 QAPLA----VTGETEKTGTMVRFWPSLETFTNVTEFE----YEILAKRLRELSFLNSGVS 202 Q +G T + F P L F N+ E ++ +R+ +++ V Sbjct: 490 QRTEPSIEHYSGPKGSDYTRITFSPDLAKF-NMQSLENGDILRLMKRRIYDMAACLPSVQ 548 Query: 203 IRLR------------------------DKRDGKEDHFHYEGGIKAFVEYLNKNKTPI-H 237 + L + DG ++ G E K P H Sbjct: 549 VSLNGIPIPSGFDAYVSMYQPKDAQPLSNAEDGAQNEQEEHGEGAEGTEGEQPGKQPTKH 608 Query: 238 PNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYM 297 P F ++ D V V L +G Q + F N+I GGTH+ + + ++ + Sbjct: 609 P--FVYAKINDRWQVAVGLTMLEG-QFSQVSFVNSIATSKGGTHVNHVAEQVVKAIHERI 665 Query: 298 DKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS--SEVKSAVEQQMNE 355 K K + R L V+ + +P F SQTKD L + + SA + Sbjct: 666 TK----KYPDLDTRPAHIRNNLFVFVNCLIENPAFDSQTKDTLTTRPAHFGSACD----- 716 Query: 356 LLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRR-KGALDLAGLPGKLADCQ-ER 413 L + L+ ++ K++ A+ ++ A + TR+ K + +P KL D Sbjct: 717 -LPDSFLKRIVAQVPIIDKVVGWAKLKQMAEFEKSSTRKPKDKAGIKAIP-KLDDANFAG 774 Query: 414 DPALSELYLV--EGDSAGGSAKQGRN---RKNQAILPLKGKILNVEKARFDKMLSSQEVA 468 P SE L+ EGDSA A G + R + PL+GK+LNV +++ ++E+ Sbjct: 775 GPRSSECTLIITEGDSAKSLAVSGLSIVGRDKYGVFPLRGKLLNVRDQSPKRVMENEELK 834 Query: 469 TLITALGCGIGRDEYNPD---KLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVER 524 L LG G++ + +LRY +++MTD D DGSHI+ L + F + P ++E+ Sbjct: 835 HLRMILGLTPGKEYRTAEDRAELRYGKVMLMTDQDHDGSHIKGLFVNFMIQFWPSLLEQ 893 >UniRef50_P08096 DNA topoisomerase 2 n=1 Tax=Schizosaccharomyces pombe RepID=TOP2_SCHPO Length = 1485 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 145/568 (25%), Positives = 253/568 (44%), Gaps = 67/568 (11%) Query: 19 VRKRPGMYIGDTDDGT----------------------GLHHMVFEVVDNAIDEALAG-H 55 V +RP YIG + T GL+ + E++ NA D + + Sbjct: 87 VLRRPDTYIGSIEPTTSEMWVFDSEKNKLDYKAVTYVPGLYKIFDEIIVNAADNKVRDPN 146 Query: 56 CKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGG 114 + VT+ + N +S+ ++G+GIP IH +E + E+I L +DDN KV+GG Sbjct: 147 MNTLKVTLDPEANVISIYNNGKGIPIEIHDKEKIYIPELIFGNLLTSSNYDDNQKKVTGG 206 Query: 115 LHGVGVSVVNALSQK--LELVIQREGKIHRQIYEHGVPQA--PLAVTGETEKTGTMVRFW 170 +G G + N S + +E + K ++Q + + + P+ + + T + F Sbjct: 207 RNGYGAKLCNIFSTEFVVETADKERMKKYKQTWYDNMSRKSEPVITSLKKPDEYTKITFK 266 Query: 171 PSLETF--TNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVE- 227 P L F + + I+ +R+ +++ + L ++R G K +VE Sbjct: 267 PDLAKFGMDKIDDDMVSIIKRRIYDMAGTVRETKVYLNNERISI-------SGFKKYVEM 319 Query: 228 YLNKNKTPIH--PNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGF 285 YL + P P + Y E +VA +DG Q F NNI GGTH+ Sbjct: 320 YLASDTKPDEEPPRVIY---EHVNDRWDVAFAVSDG-QFKQVSFVNNISTIRGGTHVNYV 375 Query: 286 RAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEV 345 + ++ + KE +KKA V A + + V+ ++ +P F SQTK+ L + Sbjct: 376 ANKIVDAIDEVVKKE--NKKAPVKAF--QIKNYVQVFVNCQIENPSFDSQTKETLTTK-- 429 Query: 346 KSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGAL--DLAGL 403 SA Q L++ L+ I +++ A+ +++++ G L + GL Sbjct: 430 VSAFGSQCT--LSDKFLK-----AIKKSSVVEEVLKFATAKADQQLSKGDGGLRSRITGL 482 Query: 404 PGKLADCQE---RDPALSELYLVEGDSAGGSAKQGRN---RKNQAILPLKGKILNVEKAR 457 KL D + ++ L L EGDSA A G + R + PL+GK+LNV +A Sbjct: 483 -TKLEDANKAGTKESHKCVLILTEGDSAKSLAVSGLSVVGRDYYGVFPLRGKLLNVREAS 541 Query: 458 FDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQ 517 ++L+++E+ + +G + + LRY ++IMTD D DGSHI+ L++ + Sbjct: 542 HSQILNNKEIQAIKKIMGFTHKKTYTDVKGLRYGHLMIMTDQDHDGSHIKGLIINYLESS 601 Query: 518 MPEIVE-RGHVYIAQPPLYKVKKGKQEQ 544 P +++ G + P+ K +G Q Q Sbjct: 602 YPSLLQIPGFLIQFITPIIKCTRGNQVQ 629 >UniRef50_Q6RCM1 DNA topoisomerase 2 n=2 Tax=Trichomonas vaginalis RepID=Q6RCM1_TRIVA Length = 1458 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 143/537 (26%), Positives = 236/537 (43%), Gaps = 54/537 (10%) Query: 35 GLHHMVFEVVDNAIDEALAGHCKEIIVTIH-----ADNSVSVQDDGRGIPTG--IHPEEG 87 GL+ + E++ NA D + TI A N +SV +DG+GI T P + Sbjct: 63 GLYKIFDEILVNAADNK---QRDPPLTTIKGEVDPAQNRISVWNDGKGISTQKQFSPNDN 119 Query: 88 VS--AAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQR--EGKIHRQ 143 E I + L ++D KV+GG +G G + N S+K + I EG ++Q Sbjct: 120 CEYYIPEFIFSQLLTSSNYNDKQEKVTGGRNGYGAKLANIFSKKFHINIYNADEGINYQQ 179 Query: 144 IYEHGVP--QAPLAVTGETEKTGTMVRFWPSLETFT--NVTEFEYEILAKRLRELSFLNS 199 + Q P G+ + + T + FWP LE F +T+ +++ +R+ +L+ + Sbjct: 180 TITDNMTNIQPPKLKNGKGKGSYTEISFWPDLERFNLQTITKDHVDLIRRRVYDLADILP 239 Query: 200 GVSIRLRDKRDGKEDHFH-YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKD-GIGVEVALQ 257 V I +G + +E K ++ K + P + EK + VA Sbjct: 240 KVKIFW----NGNQVPIKKWEDYCKVYL------KEDVKPLVCEVKNEKGYTWKIGVAPS 289 Query: 258 WNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDARE 317 + FQ+ F N + +GGTH+ +T+ + Y+ + KV + Sbjct: 290 KSREFQQ--ISFVNCVATSNGGTHVDVVVNQITKYITDYLKNR---RSGKVETKPSVVKN 344 Query: 318 GLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIID 377 L V V +P F SQTK++L + K + ++ + + +L+ TD +V + + Sbjct: 345 FLYVFVDSLVINPSFDSQTKERLTLDQKKLKDDCKLPDNFLDKILK--TD---IVALVTE 399 Query: 378 AARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS---ELYLVEGDSAGGSAKQ 434 A +E + A +KG L + KL D A S L L EGDSA +A Sbjct: 400 YANFKEQRKVANMKGTKKGRL----IINKLEDANMAGKAESLKCTLILTEGDSAKATAVT 455 Query: 435 GR---NRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPD---KL 488 G R + PL+GK+LN K+ + E+ +I +G N D +L Sbjct: 456 GLATIGRDYYGVFPLRGKLLNTRDISAKKLSENDEIQNIIKIMGLDPMEKYENDDSMKRL 515 Query: 489 RYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIV-ERGHVYIAQPPLYKVKKGKQEQ 544 RY SI+IM D DVDGSHI+ L++ F + P ++ +R + P+ KV KG ++ Sbjct: 516 RYGSIMIMADQDVDGSHIKGLIINFVHSMWPNLLKKRNFITEFITPIVKVTKGNNKK 572 >UniRef50_A8Q6X4 DNA topoisomerase 2 n=1 Tax=Brugia malayi RepID=A8Q6X4_BRUMA Length = 1178 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 144/569 (25%), Positives = 245/569 (43%), Gaps = 62/569 (10%) Query: 13 LKGLDAVRKRPGMYIGDT-----------DDGT------------GLHHMVFEVVDNAID 49 L L + RP YIG T DD T GL + E++ NA D Sbjct: 68 LTPLKHILYRPDSYIGPTFLSDEQPIYVYDDITKQILKKEARIVPGLLKIFDEILVNAAD 127 Query: 50 EALAG-HCKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDN 107 I + I + N++S+ ++GRGIP IHP EG+ +I L +DD+ Sbjct: 128 NKRRDPQMTTIAINIDKERNTISIWNNGRGIPVEIHPREGIYVPTMIFGTLFTSSNYDDS 187 Query: 108 SYKVSGGLHGVGVSVVNALSQKL--ELVIQREGKIHRQIYEHGVPQA--PLAVTGETEKT 163 K+ GG +G G + N S + E ++ G Q + + + P+ T + Sbjct: 188 ELKIVGGRNGFGAKLCNIFSTEFSVETCTKQSGLRFFQCWRNNMNDVDDPIISDASTNAS 247 Query: 164 G-TMVRFWPSLETF--TNVTEFEYEILAKRLRELSFLNSGVSIRLRDKR---DGKEDHFH 217 T V F P L F + + E +++ +R+ +++ GV++ L + G +D+ Sbjct: 248 DYTCVTFKPDLSKFKLSTLDEDTIQVMIRRIVDIAGTLDGVNVFLNGTKIEVSGFKDY-- 305 Query: 218 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRD 277 +K F Y ++ + + + + D + VA + + G+ N F NNI Sbjct: 306 ----VKLFSTYTGESVE--NSTVPSYCSVNDRWQIAVA-RSDTGY--NHISFVNNINTLK 356 Query: 278 GGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTK 337 GG H+ + L +++ Y +SA + L V+ + +P F SQ+K Sbjct: 357 GGRHVDYIVNQIVSRLKHEINQR-YGCDKFISA--HQIKNRLHIFVNSLIENPAFESQSK 413 Query: 338 DKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGA 397 + L +S + E E ++ D+ I+ + D ++ + R M R Sbjct: 414 EYLTTSVKNFGSTCIVPESFYENFIK---DSDIIHHLLCDISQQHTTSLN-RSMNR--SL 467 Query: 398 LDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGR---NRKNQAILPLKGKILNVE 454 DL+ L AD ++ L + EGDSA A G RK + P++GK+ NV Sbjct: 468 WDLSKLEDA-ADAGTKNGCNCTLIITEGDSAKALAVAGLAVIGRKQYGVFPIRGKLTNVR 526 Query: 455 KARFDKMLSSQEVATLITALGCGIGRDEYNPDK---LRYHSIIIMTDADVDGSHIRTLLL 511 + + E++ L+ LG G + + +K LRY ++IMTD D DGSHI+ L++ Sbjct: 527 GMDAKMAVENAEISALVRILGLKFGENYSSHEKLKSLRYGRLLIMTDQDPDGSHIKGLIV 586 Query: 512 TFFYRQMPEIVERGHVYIAQPPLYKVKKG 540 F + P +++ +V PL K K+G Sbjct: 587 NFLHVYWPSLLKANYVSYFITPLLKAKRG 615 >UniRef50_C0SNC2 DNA gyrase subunit B (Fragment) n=87 Tax=Lactobacillales RepID=C0SNC2_9STRE Length = 153 Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 69/151 (45%), Positives = 96/151 (63%), Gaps = 3/151 (1%) Query: 126 LSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYE 185 LS +L++ + + G+++ Q Y G L V GET++TGT V F P E FT +EF++ Sbjct: 1 LSTQLDVRVHKNGQVYFQEYRRGQVVDDLKVIGETDRTGTTVHFTPDPEIFTETSEFDFA 60 Query: 186 ILAKRLRELSFLNSGVSIRLRDKRDGKEDH---FHYEGGIKAFVEYLNKNKTPIHPNIFY 242 LAKR++EL+FLN G+ I + DKRDG E + +HYEGGI ++VE+LN K I Y Sbjct: 61 KLAKRVQELAFLNKGLRISITDKRDGNEANDKEYHYEGGIVSYVEFLNDTKEVIFNQPIY 120 Query: 243 FSTEKDGIGVEVALQWNDGFQENIYCFTNNI 273 E +GI VEVA+Q+ GF EN+ F NNI Sbjct: 121 TDGEMEGIAVEVAMQYTTGFHENVMSFANNI 151 >UniRef50_Q1CZR7 DNA gyrase, B subunit, truncated n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1CZR7_MYXXD Length = 361 Score = 135 bits (339), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 101/370 (27%), Positives = 170/370 (45%), Gaps = 41/370 (11%) Query: 16 LDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDG 75 ++ VRKRPGMY GD + GLHH+V+ ++D A +EA G C+++++ + D S+++ Sbjct: 11 VENVRKRPGMYCGDVGE-YGLHHLVYFLLDVAYEEARRGECRDVVLEVGGDGSIALFCTS 69 Query: 76 RGIPTGIHPEEGVSAAEVIMTVLHAG--GKFDDNSYKVSGGLHGVGVSVVNALSQKLELV 133 R V+A ++ AG G+ + + L V ALS + ++ Sbjct: 70 RT----------VTAENLVRVATGAGFLGRPPGDGWGWDSML-----VVSLALSSRYQVD 114 Query: 134 IQREGKIHRQIYEHGVPQA---------PLAVTGETEKTGTMVRFWPSLETFTNVTEFEY 184 I +G+ R + EHG PQ P+ V+ E G V F P F V F+ Sbjct: 115 IWADGRQWRVMGEHGHPQGEGAAVTPMEPMPVSAER---GVRVHFVPDATIF-EVLAFDR 170 Query: 185 EILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFS 244 L++R EL+ L G+ + D + G+ +H GG+ + L + + +HP F Sbjct: 171 ARLSRRCNELAALAPGLRVSFADLQRGERTLWHLPGGVAQWAHVLTEARPQLHPEPVVFD 230 Query: 245 TEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYM-DKEGYS 303 DG+ V+ ALQW + + F N + G H+ G A+ L + G Sbjct: 231 FTWDGLRVQCALQWCEDEDSTLLSFANAVRTVRHGAHVKGVTQALRGALAKLSGETRGAF 290 Query: 304 KKAKVSATGDDAREGLIAVVSVKVPDPK--FSSQTKDKLVSSEVKSAVEQQMNELLAEYL 361 A+V+ +GL A+V+V P + F+ TK+ L ++ A+ +Q+ L E L Sbjct: 291 PWARVA-------QGLTAIVAVSGPRRQMAFAGPTKELLAIPGLEEAIRKQLQPLFIELL 343 Query: 362 LENPTDAKIV 371 E+P ++ Sbjct: 344 REHPVTPALL 353 >UniRef50_Q56C43 Gp60plus39 DNA topoisomerase subunit n=3 Tax=T4-like viruses RepID=Q56C43_9CAUD Length = 630 Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 158/573 (27%), Positives = 252/573 (43%), Gaps = 71/573 (12%) Query: 12 VLKGLDAVRKRPGMYIGDTDDGT----------------GLHHMVFEVVDNAIDEALAGH 55 L D +RKRP MY+G + GL ++ E++DN+IDEA+ Sbjct: 29 CLSDRDHIRKRPNMYVGSVNREAHERFIMGKFRKVEYVEGLVKIINEILDNSIDEAIRTD 88 Query: 56 CK---EIIVTIHADNSVSVQDDGRGIPT-GIHPEEG--VSAAEVIMTVLHAGGKFDDNSY 109 K I V I N V++ D+GRGIP + EG V T+ +G FDD + Sbjct: 89 FKFANRIEVKIDH-NLVTISDNGRGIPQDDVRTPEGKIVPKPVAAWTMAKSGSNFDDEN- 146 Query: 110 KVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRF 169 +V+ G++GVG + N S + + GK I Q T T++ GT V+F Sbjct: 147 RVTMGMNGVGSFLTNCYSS-IFIGETSNGKRKVTINCTDGAQNMDYRTSPTKEQGTTVKF 205 Query: 170 WPSLETF--TNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVE 227 P F + E E++ RL L+ + S++ + + F G + Sbjct: 206 TPDFSIFGVDGIDEETKEVIKDRLMALAV--AFPSVKFTYNGETLPNKFAMYGAM----- 258 Query: 228 YLNKNKTPIHPNIFYF--STEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGF 285 Y + T + I + STE DGF++ F N + ++GG H+ Sbjct: 259 YGDSTITQTNNKISFILASTE-------------DGFKQK--SFVNGLDTKNGGVHVDCM 303 Query: 286 RAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSV-KVPDPKFSSQTKDKLVSSE 344 + L + KK + +E L VV + P F SQTK+KL ++ Sbjct: 304 IDGIYAELEPMI-----KKKHAIEIPKARVKECLTLVVFLHNFNAPAFDSQTKEKLTNTA 358 Query: 345 VKSAVEQQMN-ELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGL 403 + +N + +A+ ++ D ++ II++A R+ A A +T+ K A + Sbjct: 359 GEFNNHAGLNYKKIAKQIM----DTSEIITPIIESALIRKQAAEAAAITKAKKKAKKAKI 414 Query: 404 PGKL-ADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 462 + A + D + L+L EGDSA G + RN + Q PL+GK LN F +L Sbjct: 415 AKHVPASGIDTDGVETTLFLTEGDSAVGQFIECRNEETQGAFPLRGKPLNTWGMSFTDIL 474 Query: 463 SSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIV 522 ++E+ L+ L G + ++ Y +I IM DADVDG I TLL+ FF R PE+ Sbjct: 475 KNKELFELMAILNLHPG----DSSEMAYDNIGIMVDADVDGGDILTLLIAFFSR-WPELF 529 Query: 523 ERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQY 555 E+ + + P+ K GK E++ +MD + Sbjct: 530 EKKKIRYIRTPIIIAKIGKDEKWFY---SMDDF 559 >UniRef50_A8V367 Gyrase B (Fragment) n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V367_9AQUI Length = 277 Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 90/251 (35%), Positives = 134/251 (53%), Gaps = 26/251 (10%) Query: 463 SSQEVATLITALGCGIG----RDE--YNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYR 516 S+ EV ++I A+G GIG DE ++ KLRYH II+M DADVDGSHI TLLLT FYR Sbjct: 1 SNDEVRSIINAIGTGIGLPTESDEEGFDISKLRYHKIILMADADVDGSHITTLLLTLFYR 60 Query: 517 QMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALA 576 P+++E G +YIAQPPLYK+KKG+ Y+KDDE + + I ALD L Sbjct: 61 YFPQLIENGFLYIAQPPLYKLKKGRTNIYVKDDEELARIIIDFALD----EIEVVDKKLT 116 Query: 577 GEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSE 636 L+ LV + + + + +R ++ LI L+E DL E+ V+ L + Sbjct: 117 KSQLKNLVKKAKEYKDLRESLIKRRDAKIIDALI-SLKLSEDDLLYEEKTKEIVDKLKNV 175 Query: 637 LNDKEQHGSQWK----FDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICT 692 + + E + + + FD+ + ++N +RV T G+ T Y YRRI Sbjct: 176 ITEYEIYYEKDQIEGDFDIVFDKKENFGVSTLRVDT-GLLTSYA----------YRRILE 224 Query: 693 LGEKLRGLLEE 703 + E+ + ++ E Sbjct: 225 IEEEFKQIVGE 235 >UniRef50_A4HGT2 DNA topoisomerase 2 n=11 Tax=Trypanosomatidae RepID=A4HGT2_LEIBR Length = 1501 Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 139/546 (25%), Positives = 242/546 (44%), Gaps = 79/546 (14%) Query: 22 RPGMYIGD----TDD------------------GTGLHHMVFEVVDNAIDEALAGHCKEI 59 RP MYIG TDD GL+ + E++ NA D + + Sbjct: 21 RPDMYIGTIEPVTDDIWVYDDAENIMKQRKCTWTPGLYKIFDEILVNAADNKVRDPLGQT 80 Query: 60 IVTIH-ADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 118 ++ + ++ V V ++G GIP H E + E+I L +DD KV+GG +G Sbjct: 81 VIRVWMTEDYVRVYNNGEGIPIQRHREHDLWVPEMIFGHLLTSSNYDDEEAKVTGGRNGF 140 Query: 119 GVSVVNALSQKLEL--VIQREGKIHRQIYEHGVPQA--PLAVTGETEKTGTMVRFWPSLE 174 G + N S++ E+ V R K + + + Q P+ V E+ TMV F+P Sbjct: 141 GAKLTNVFSKQFEVETVHSRSRKKFYMKWTNNMLQHDDPIIVPCESADY-TMVTFYPDFA 199 Query: 175 TFTNVTEFEYEILAKRLREL----SFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLN 230 F +V +F +IL R + + + L D+R F EY++ Sbjct: 200 RF-HVDKFSEDILLMMKRRVYDVAGCTDKTLKCFLNDERIA----------CTTFPEYVD 248 Query: 231 KNKTPIHPNI--------FYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 282 ++P + + + ++ + V V+ N G Q+ F N+I GGTH+ Sbjct: 249 -----LYPTMGEERKAASYSRANDRWELCVRVS---NIGPQQ--VSFVNSIATTRGGTHV 298 Query: 283 AGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 342 + M + + +++ KK V + R + V+ + +P F SQTK+ L + Sbjct: 299 ---KYIMDQIVTKVVEQAKKKKKTDVKSHM--IRPHIFLFVNCLIDNPSFDSQTKETLNT 353 Query: 343 SEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAG 402 + K + + +Y++ + + V ++ ++ A+E A + + R++ + G Sbjct: 354 VKSKFGSTCDLPNSIVDYIMNSGIVERSV--EMANSKIAKEMASKIKSSDRKQ----IMG 407 Query: 403 LPGKLADCQE---RDPALSELYLVEGDSAGGSAKQG---RNRKNQAILPLKGKILNVEKA 456 +P KL D E + L L EGDSA G ++R + PL+GK LNV +A Sbjct: 408 IP-KLDDANEAGGKHGHRCTLILTEGDSAKTLCTAGLAVKDRDYFGVFPLRGKPLNVREA 466 Query: 457 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYR 516 K+ + +E+ ++ +G I + N D LRY ++IM+D D DGSHI+ LL+ F + Sbjct: 467 SLKKLAACEEIQCVMKIMGLDIRQKYENTDGLRYGHLMIMSDQDHDGSHIKGLLINFIHC 526 Query: 517 QMPEIV 522 P ++ Sbjct: 527 FWPNLL 532 >UniRef50_B7XIW3 DNA topoisomerase 2 n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XIW3_ENTBH Length = 1159 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 135/533 (25%), Positives = 237/533 (44%), Gaps = 61/533 (11%) Query: 35 GLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVI 94 GL+ + E++ NA D I + SVS+++DG GIP IH +E V E+I Sbjct: 56 GLYKIFDEILVNAADNKQRDPRMTYIKVYINEMSVSIENDGNGIPIEIHQKEQVYVPELI 115 Query: 95 MTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHG--VPQA 152 L ++DN KV+GG +G G + N S E+ +G+ + Q++++ + Sbjct: 116 FGHLLTSSNYNDNEKKVTGGRNGYGAKLCNIFSVHFEVETVSKGRKYSQVFKNNMEIIGK 175 Query: 153 PLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILA---KRLRELSFLNSGVSIRLRDKR 209 P ++ + K T + F P + F ++ F+ +I++ KR+ ++ I L DK+ Sbjct: 176 P-TISAYSGKDYTKITFVPDFKRF-GMSLFDSDIISIFYKRVYDMCATVKNTEIYLNDKK 233 Query: 210 DGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQW-------NDGF 262 I EY Y S + + ++ +W ++ F Sbjct: 234 ----------LMINNLKEYAQ----------LYLSHDVKLVTKKINDRWEIACASTDEQF 273 Query: 263 QENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDK--EGYSKKAKVSATGD-DAREGL 319 + F N+I GGTH+ L+ MD K+ K + + L Sbjct: 274 MQ--VSFVNSICTSKGGTHV-------NHVLDQLMDPLISAVKKRDKTLVLKPLNVKNNL 324 Query: 320 IAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAA 379 ++ + +P F SQTK+ L + Q + + + +++N TD ++ KII + Sbjct: 325 FLFINALIENPIFDSQTKENLTLKSSAFGSKCQPIDDIIKDIIKN-TD---IIDKIITFS 380 Query: 380 RAREAARRAREMTRRKGALDLAGLPGKLADCQ---ERDPALSELYLVEGDSAGGSAKQGR 436 + ++A + T + G+P KL D + + L L EGDSA A G Sbjct: 381 KIKQAVLLKK--TDGVKTTKIVGIP-KLEDANFAGTKRSSECTLILTEGDSAKTLAVAGL 437 Query: 437 N---RKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSI 493 + R + PL+GK+LNV +A +++ + E++ + LG G+ + LRY I Sbjct: 438 SVVGRDKYGVFPLRGKLLNVREASNKQIMDNAEISAIKKILGLQHGKTYTDTTSLRYGHI 497 Query: 494 IIMTDADVDGSHIRTLLLTFFYRQMPEIVE-RGHVYIAQPPLYKVKKGKQEQY 545 +IMTD D DGSHI+ L++ F P +++ G + P+ + K K+E+Y Sbjct: 498 MIMTDQDFDGSHIKGLIINFLDYFFPSLLKILGFLQEFITPIVRATK-KKEKY 549 >UniRef50_P34534 Putative DNA topoisomerase 2, mitochondrial n=5 Tax=Caenorhabditis RepID=TOP2M_CAEEL Length = 1054 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 135/522 (25%), Positives = 231/522 (44%), Gaps = 71/522 (13%) Query: 69 VSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQ 128 +SV ++G G+P IHP EG+ ++ L +DD+ K GG +G G + N S+ Sbjct: 15 ISVWNNGSGLPVEIHPTEGIYVPTLVFGNLFTSSNYDDSEIKTVGGRNGYGAKLCNIFSK 74 Query: 129 K--LELVIQREGKIHRQIYEHGVPQAPLA----VTGETEKTGTMVRFWPSLETFT--NVT 180 + +E V R + RQ + + + A + ET K T V F P LE F ++ Sbjct: 75 EFIVETVDTRIKRRFRQKWYDNMKKCNEAEVVEILDETVKDYTKVEFVPDLERFQIDKLS 134 Query: 181 EFEYEILAKRLREL-SFLNSGVSIRLRDKR---DGKEDHFHYEGGIKAFVEYLNKNKTPI 236 + +++ +R+ E+ + L V + L ++ DG ED +V+ N + + Sbjct: 135 DDVIDLIGRRVFEVAATLPRDVDVYLNGQKCDVDGFED----------YVKMFNDSSSL- 183 Query: 237 HPNIFYFSTEKDGIGVEVALQWNDGFQEN------IYCFTNNIPQRDGGTHLAGFRAAMT 290 +F T + +GV + N+ F E+ I F NNI GG+H+ + Sbjct: 184 ---LFLHPTPRWHVGVA---KRNNFFGESHVVLPKIVSFVNNINTEKGGSHVDYVMDKIV 237 Query: 291 RTLNAYMD-KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS------- 342 + +D K G K+ A + L ++ + +P F SQTK+ L + Sbjct: 238 NIIKPIVDSKLGDPTKSVKPAV---IKNNLSIFINCLIENPSFESQTKETLTTKAKNFGS 294 Query: 343 ---SEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALD 399 + K E L E ++E + K K + R + R++ + + A + Sbjct: 295 IFECDAKKTAEWAEQSGLIEDIVEEVLNMK---KKKLPGKRV--SVSSVRDIVKLEDA-E 348 Query: 400 LAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRN---RKNQAILPLKGKILNVEKA 456 AG+ G C L L EGDSA A G R+ + PLKGK+LNV Sbjct: 349 WAGITGTAEKCT--------LILTEGDSAKALALAGLEVLGRETYGVFPLKGKLLNVSNL 400 Query: 457 RFDKMLSSQEVATLITALGCGI-GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFY 515 + ++E++ L+ LG + + LRY ++I+ D D DGSHI+ L++ F + Sbjct: 401 DDARASKNEEISNLLRILGLKFEDSNSITRESLRYGRLLILADQDEDGSHIKGLIVNFIH 460 Query: 516 RQMPEIVER-GHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQ 556 + P +V G + + PL K KKG + ++ +M++Y+ Sbjct: 461 KFWPSLVHTDGFIQSFRTPLLKAKKGDK---VRSFFSMNEYR 499 >UniRef50_P11388 DNA topoisomerase 2-alpha n=47 Tax=Eukaryota RepID=TOP2A_HUMAN Length = 1531 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 143/551 (25%), Positives = 243/551 (44%), Gaps = 57/551 (10%) Query: 25 MYIGDTDDGT---------GLHHMVFEVVDNAIDEALAGHCKEII-VTIHADNS-VSVQD 73 M++ D D G GL+ + E++ NA D I VTI +N+ +S+ + Sbjct: 61 MWVYDEDVGINYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWN 120 Query: 74 DGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQK--LE 131 +G+GIP H E + +I L +DD+ KV+GG +G G + N S K +E Sbjct: 121 NGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVE 180 Query: 132 LVIQREGKIHRQIYEHGVPQAPLAVTGETE------KTGTMVRFWPSLETFTNVTEFEYE 185 + K+ +Q + + +A GE E + T + F P L F + + + Sbjct: 181 TASREYKKMFKQTWMDNMGRA-----GEMELKPFNGEDYTCITFQPDLSKF-KMQSLDKD 234 Query: 186 ILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFST 245 I+A +R ++ +G + ++ +G + G +++V+ K+K N Sbjct: 235 IVALMVRR-AYDIAGSTKDVKVFLNGNKLPVK---GFRSYVDMYLKDKLDETGNSLKVIH 290 Query: 246 EKDGIGVEVALQWND-GFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSK 304 E+ EV L ++ GFQ+ F N+I GG H+ + L + K+ Sbjct: 291 EQVNHRWEVCLTMSEKGFQQ--ISFVNSIATSKGGRHVDYVADQIVTKLVDVVKKKN--- 345 Query: 305 KAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLEN 364 K V+ + + V+ + +P F SQTK+ + Q++E + Sbjct: 346 KGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQPKSFGSTCQLSEKFIK----- 400 Query: 365 PTDAKIVVGKIIDAARAREAARRAREMTRRKGALD---LAGLPGKLADCQE---RDPALS 418 A I G I+++ + ++ ++ A+ + G+P KL D + R+ Sbjct: 401 ---AAIGCG-IVESILNWVKFKAQVQLNKKCSAVKHNRIKGIP-KLDDANDAGGRNSTEC 455 Query: 419 ELYLVEGDSAGGSAKQGRN---RKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALG 475 L L EGDSA A G R + PL+GKILNV +A +++ + E+ +I +G Sbjct: 456 TLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMENAEINNIIKIVG 515 Query: 476 CGIGR---DEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQP 532 + DE + LRY I+IMTD D DGSHI+ LL+ F + P ++ + Sbjct: 516 LQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLRHRFLEEFIT 575 Query: 533 PLYKVKKGKQE 543 P+ KV K KQE Sbjct: 576 PIVKVSKNKQE 586 >UniRef50_B8C981 DNA topoisomerase 2 (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8C981_THAPS Length = 1179 Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 142/587 (24%), Positives = 250/587 (42%), Gaps = 111/587 (18%) Query: 16 LDAVRKRPGMYIGDTDDG----------------------TGLHHMVFEVVDNAIDEAL- 52 L+ + RP MYIG T+ L + E++ NA D L Sbjct: 13 LEHILLRPSMYIGPTEHADPKSCSSTNSPWTMQRQELSYVPALLKIFDEILVNASDNRLR 72 Query: 53 -AGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKV 111 G C + +D +S+ ++G+ IP IH +E + E++ L G F+D+ ++ Sbjct: 73 HPGSCNHFPSS--SDPYISITNNGKSIPIQIHRKENMYIPELLFGHLLTGSNFNDDQKRL 130 Query: 112 SGGLHGVGVSVVNALSQKLELVI----QREGKI--HRQIYEHGVP---QAPLAVTGETEK 162 +GG HG G + N S++ + I +GKI ++Q++E + +A + + + Sbjct: 131 TGGRHGYGAKLTNVFSKQFVVEIGDGHSSKGKIKTYKQVWEDNMSVCHEAEVVSRDKKDA 190 Query: 163 TG------TMVRFWPSLETFTN------VTEFEYEILAKRLRELSFLNSGVSIRLRDKRD 210 G T + F P L T + E EY+++ +R+ +++ + G +L + Sbjct: 191 DGKGNLDYTRISFIPDLARLTGDRKTEMLPEEEYQLMKRRVVDIAGCSGG---KLTVTLN 247 Query: 211 GKEDHFHYEGGIKAFVEYLN------KNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQE 264 G+E + F +Y N + TP+ P +++ K EVA+ ++ Sbjct: 248 GEEI------SVSGFEDYANLYRQPESSATPLPPMVYH----KLNSRWEVAVGLSETKSL 297 Query: 265 NIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAK----------VSATGDD 314 F N + GGTH+ A+ R ++ Y+ +K A+ +S + Sbjct: 298 ESISFVNGMNTSRGGTHV----DALARQISQYIADHINNKMARQLDNLQSGQPISVSVRM 353 Query: 315 AREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGK 374 R L V+ + +P F SQ K+ L S+ + + + L N K+V Sbjct: 354 VRRHLFLCVNCLIENPSFDSQMKECLTSNP---------DNFGSHFELSNSFLRKLVGPG 404 Query: 375 IID-------AARAREAARRAREMTRRK----GALDLAGLPGKLADCQERDPALSELYLV 423 I++ A+ AR +E T+R+ L+ A L G D +P L L Sbjct: 405 IVEEVLRMAMGAQQVNMARLLKEQTKRQVLSIPKLEDANLAGS-TDIGTENPC--TLILT 461 Query: 424 EGDSAGGSAKQGR---NRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR 480 EGDSA A G R + + PL+GK +NV ++ ++ E+ + LG + Sbjct: 462 EGDSAKALAVAGLEVVGRDHYGVFPLRGKFMNVRNVTVKQLATNAELKAMCAILGLQFEK 521 Query: 481 DEYNPDK----LRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVE 523 Y+ K LRY +++MTD D DGSHI+ L++ F P +++ Sbjct: 522 -SYDTAKERQELRYGHVMLMTDQDADGSHIKGLIMNMFRFFWPALLK 567 >UniRef50_C9DGI8 Gp60plus39 DNA topoisomerase subunit n=1 Tax=Deftia phage phiW-14 RepID=C9DGI8_9CAUD Length = 648 Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 143/586 (24%), Positives = 254/586 (43%), Gaps = 93/586 (15%) Query: 6 DSSSIKVLKGLDAVRKRPGMYIGDTD----------------------DGTGLHHMVFEV 43 D S K+L D +R RPG Y+GD + + E+ Sbjct: 24 DVSKYKMLSERDHIRIRPGRYLGDINTSLVKDSWTVNEQGQVERRDVQQNPAFTKLFDEI 83 Query: 44 VDNAIDEALAGHCKEIIVTIHADNS-----VSVQDDGRGIPT--GIHPEEG----VSAAE 92 + N+ D +L K + + I D S +SV D+G GIP I EG + + Sbjct: 84 ITNSADFSLTADGKHLNI-IRVDYSREHGCISVYDNG-GIPVVETIVDREGQPTKLWIPD 141 Query: 93 VIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQI-YEHGVPQ 151 +I L +G F+D + S G +G G ++VN S + + V +GK I Y G+ Sbjct: 142 MIFGFLRSGSNFNDEADSESAGQNGEGSTLVNVFSSRFD-VETCDGKNKFSITYLDGMAN 200 Query: 152 --APLAVTGETEKTGTMVRFWP--SLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRD 207 AP V + T + ++P S+ T ++ + L +R E++ N+ + + Sbjct: 201 KTAPEVVAAQGATPFTRITYFPEWSIMGMTGQEDWIEDTLRRRCLEVAACNTHIRV---- 256 Query: 208 KRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIY 267 Y G V+ + P S K + + ++ +GF+ Y Sbjct: 257 ----------YYNGKPVNVKKFGDFAAMLDPVCVSESAPKWDVALSLS---KNGFKH--Y 301 Query: 268 CFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKV-SATGDDAREGLIA----- 321 + N+ GGTH+ N MDK +A + S T D + I Sbjct: 302 SYVNSTLTFVGGTHI-----------NHVMDKIVAEVRAHIESKTKQDIKPAEILNQFQL 350 Query: 322 VVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARA 381 V+ ++ +P++SSQTK+ L++ V+ ++ + ++++P ++ K+++ A Sbjct: 351 TVAARINNPRYSSQTKENLITPVSSYNVKYSPSKEFIKAIIDSP-----MMKKLLEWAER 405 Query: 382 REAARRAREMTR-----RKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGR 436 R+A + +E + RK + +P K ++ A + L++ EGDSA Q Sbjct: 406 RKAVQDIKEAEKEIQDARKASFH--HIP-KYRPATNKNKAENILFVAEGDSALKPL-QAA 461 Query: 437 NRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIM 496 + + + PL+GK NV + +E LI LG + ++N D +RY ++++ Sbjct: 462 KKPHHGLFPLRGKPDNVFDKTIRHLAKQKEFQDLIQILGLDL--HQFNSDTIRYSALVVA 519 Query: 497 TDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQ 542 TDAD+DG+HIR LL F+R +++ G + P+ VK+GK+ Sbjct: 520 TDADLDGAHIRGLLTVAFWRFWRPLIDEGFLRFLVTPIITVKQGKE 565 >UniRef50_B9PK68 DNA topoisomerase 2 n=3 Tax=Toxoplasma gondii RepID=B9PK68_TOXGO Length = 1688 Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 159/670 (23%), Positives = 260/670 (38%), Gaps = 137/670 (20%) Query: 16 LDAVRKRPGMYIGDTDDGT----------------------GLHHMVFEVVDNAID---- 49 L+ + RP YIG T+ T GL+ +V E++ NA D Sbjct: 47 LEHILLRPDTYIGSTEVHTQALWVMEEGQETMVYKTINYVPGLYKIVDEILVNAADVKAR 106 Query: 50 ----------EALAGHCKEIIVTIH-ADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVL 98 + A I + I+ A +S+ +DG GIP IH E V E+I L Sbjct: 107 EGEEQKGKPLKPGARRMSAIKIDINKASGRISIWNDGEGIPVAIHQEHKVYVPEMIFGQL 166 Query: 99 HAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVI---QREGKIHRQIYEHGVPQAPLA 155 +DD+ +V+GG +G G + N S++ + +R+ K ++ ++ Sbjct: 167 LTSDNYDDSECRVTGGRNGYGAKLTNIFSREFTVECADGERKKKFKMTWTKNMEQKSESE 226 Query: 156 VTGETEKTGTMVRFWPSLETF--TNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE 213 ++ + F P F T + +L KR +L+ SGV + L R Sbjct: 227 ISSYNGTDYVKISFIPDFAKFGMTGFDDDSLSLLRKRAYDLAG-TSGVKVFLNGTRI--- 282 Query: 214 DHFHYEGGIKAFVEYLN------KNKTPIHPNIFYFSTEKD------------------- 248 I +F +Y++ K++ P + ++ D Sbjct: 283 -------DINSFSQYVDLYLGGRKSEKPSKEKEEFDESDDDWDEGPKRKKAAKKNGKKGE 335 Query: 249 -------GIGVEVAL------QW--------NDGFQENIYCFTNNIPQRDGGTHLAGFRA 287 GVE + QW DG Q F N+I GGTH++ Sbjct: 336 LEDEEDVANGVEKKVIKIHDKQWRWEVVISSTDGGQFQQVSFVNSICTTKGGTHVS---H 392 Query: 288 AMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTK---------- 337 + L A + K K + ++ L VS + +P F SQTK Sbjct: 393 VIEPLLAAIVKKANTKNKGGMEIKAAHVKQHLWIFVSCLIVNPAFDSQTKETLTTKPAKF 452 Query: 338 -------DKLVSSEVKSAV----------EQQMNELLAEYLLENPTDAKIVVGKIIDAAR 380 DK + VKS++ +QQ + LL+ + V + + Sbjct: 453 GSKCTLADKTIGQVVKSSIVENVVLWAQTKQQSVRAFSLSLLDCWRRGALSVDRPVFRLF 512 Query: 381 AREAARRAREMTRRKGALDLAGLPGKLADCQE---RDPALSELYLVEGDSAGGSAKQGRN 437 R+ ++ + KG LAG+P KL D + R L L EGDSA S G + Sbjct: 513 VFVELRKQMKVGKTKGRERLAGIP-KLEDANDAGGRHSQDCTLILTEGDSAKTSCLAGLS 571 Query: 438 ---RKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSII 494 R + PL+GK+LNV A F ++ ++E+ ++ +G + + LRY S++ Sbjct: 572 VVGRDRYGVFPLRGKLLNVRDASFKQLTENKEIQNILKIVGLQVNDRTEDTRGLRYGSVM 631 Query: 495 IMTDADVDGSHIRTLLLTFFYRQMPEIVE-RGHVYIAQPPLYKVKKGKQEQYIKDDEAMD 553 IMTD D DGSHI+ LL+ + P++++ RG + P+ KV K E+ + Sbjct: 632 IMTDQDHDGSHIKGLLINMMHHYWPQLLKCRGFLKAFSTPIVKVSKNNVEKAFYTIPEYE 691 Query: 554 QYQISIALDG 563 Q++ S G Sbjct: 692 QWKRSCNTTG 701 >UniRef50_P27570 DNA topoisomerase 2 n=15 Tax=Trypanosomatidae RepID=TOP2_CRIFA Length = 1239 Score = 128 bits (321), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 142/594 (23%), Positives = 240/594 (40%), Gaps = 81/594 (13%) Query: 6 DSSSIKVLKGLDAVRKRPGMYIGDTDDGT----------------------GLHHMVFEV 43 D+S + L +D V RP MY+G + + GL +V E+ Sbjct: 3 DASKYQKLTPIDHVLLRPEMYVGSIETQSIPMFVFDPAKGKMVWESMQVNQGLLKIVDEI 62 Query: 44 VDNAID----EALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLH 99 + NA D I + I + V++DG G+P E + E++ L Sbjct: 63 LLNAADNINNSVRGARMTYISIKISDSGEIMVENDGAGLPIVKSKEHKMYIPEMVFGHLL 122 Query: 100 AGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGK-IHRQIYEH-GVPQAP-LAV 156 +++++ + G HG G + N LS K +V + G+ H +H + P ++ Sbjct: 123 TSSNYNNDASSTTAGRHGYGAKLTNILSTKFSVVCRTAGREFHMSWTDHMRMATTPRVSN 182 Query: 157 TGETEKTGTMVRFWPSLETF---TNVTEFEYE-ILAKRLRELSFLNSGVSIRLRDKRDGK 212 EK T V F P F T + + +L KR+ +L+ + S + +RL + Sbjct: 183 VDPKEKNVTRVTFMPDYAHFGFPTAAISLDMKRVLHKRIMDLAAMFSKIEVRLNN----- 237 Query: 213 EDHFHYEGGIKAFVEYLNKNKTP-----IHPNIFYFSTEKDGIGVEVALQWNDGFQENIY 267 G + F +Y P + P F + I L + + I Sbjct: 238 -----VPFGFQTFNDYARLYSLPGADGAMPPEPFVHTGPNGSIAFVPQLTQS---PKRIV 289 Query: 268 CFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKV 327 N + +GGTH + L++ K KV T AR + V ++ Sbjct: 290 GVVNGVVTYNGGTHCTSAMEILETGLDSL--SRSLKKDGKVIDTNRVARHFTVLVFLIQ- 346 Query: 328 PDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARR 387 PKF SQ+K +LVS+ V + L +YL P ++A + Sbjct: 347 SQPKFDSQSKARLVSTVTMPRVPRTA---LDQYLAAMP---------FLEAHMNSMDDQL 394 Query: 388 AREMTRRKGA------LDLAGLPGKLADC---QERDPALSELYLVEGDSAGGSAKQG--- 435 A E+ + G L KL D + + L + EGDSA A Sbjct: 395 AAELNKEIGTGKRLSSRSLISSITKLVDATSSRSDGKNIRTLIVTEGDSAKALALNSLSS 454 Query: 436 RNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 495 +K + PL+GK+LNV ++ + +E+ L ALG +G+ +P +LRY +++ Sbjct: 455 EQKKFCGVFPLRGKLLNVRNKNLKRLKTCKELQDLFLALGLELGKTYKSPAELRYQRLLV 514 Query: 496 MTDADVDGSHIRTLLLTFFYRQMPEIVER--GHVYIAQPPLYKVK-KGKQEQYI 546 MTD D DGSHI+ L++ F P +++ G++ + P+ K+K GK ++ + Sbjct: 515 MTDQDADGSHIKGLVINAFESLWPSLLQHNPGYISLFSTPIVKIKVNGKAKEVV 568 >UniRef50_Q02880 DNA topoisomerase 2-beta n=175 Tax=Eukaryota RepID=TOP2B_HUMAN Length = 1626 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 140/571 (24%), Positives = 248/571 (43%), Gaps = 65/571 (11%) Query: 25 MYIGDTDDGT---------GLHHMVFEVVDNAIDEALAGHCKEII-VTIHAD-NSVSVQD 73 M++ D D G GL+ + E++ NA D I V+I + N +S+ + Sbjct: 82 MWVYDEDVGMNCREVTFVPGLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWN 141 Query: 74 DGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELV 133 +G+GIP H E V +I L +DD+ KV+GG +G G + N S K + Sbjct: 142 NGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTV- 200 Query: 134 IQREGKIHRQIYEHGVPQAPLAVTGETEKTG---------TMVRFWPSLETFTNVTEFEY 184 + + Y+H Q + +T + T + F P L F + + + Sbjct: 201 -----ETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKF-KMEKLDK 254 Query: 185 EILA---KRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNK---TPIHP 238 +I+A +R +L+ GV + K+ G +++V+ K+K T + Sbjct: 255 DIVALMTRRAYDLAGSCRGVKVMFNGKK-------LPVNGFRSYVDLYVKDKLDETGVAL 307 Query: 239 NIFY-FSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYM 297 + + + E+ + + ++ + GFQ+ F N+I GG H+ + L + Sbjct: 308 KVIHELANERWDVCLTLSEK---GFQQ--ISFVNSIATTKGGRHVDYVVDQVVGKLIEVV 362 Query: 298 DKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELL 357 K+ KA VS + + ++ + +P F SQTK+ + + Q L Sbjct: 363 KKKN---KAGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMTLQPKSFGSKCQ----L 415 Query: 358 AEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQE---RD 414 +E + ++ IV I++ + + + ++ + K + + G+P KL D + + Sbjct: 416 SEKFFKAASNCGIVES-ILNWVKFKAQTQLNKKCSSVKYS-KIKGIP-KLDDANDAGGKH 472 Query: 415 PALSELYLVEGDSAGGSAKQGRN---RKNQAILPLKGKILNVEKARFDKMLSSQEVATLI 471 L L EGDSA A G R + PL+GKILNV +A +++ + E+ +I Sbjct: 473 SLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQIMENAEINNII 532 Query: 472 TALGCGIGR---DEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVY 528 +G + D + LRY I+IMTD D DGSHI+ LL+ F + P +++ G + Sbjct: 533 KIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLE 592 Query: 529 IAQPPLYKVKKGKQEQYIKDDEAMDQYQISI 559 P+ K K KQE D+++ I Sbjct: 593 EFITPIVKASKNKQELSFYSIPEFDEWKKHI 623 >UniRef50_UPI0000DA3D74 PREDICTED: similar to topoisomerase (DNA) II beta n=1 Tax=Rattus norvegicus RepID=UPI0000DA3D74 Length = 1445 Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 140/571 (24%), Positives = 248/571 (43%), Gaps = 65/571 (11%) Query: 25 MYIGDTDDGT---------GLHHMVFEVVDNAIDEALAGHCKEII-VTIHAD-NSVSVQD 73 M++ D D G GL+ + E++ NA D I V+I + N +S+ + Sbjct: 70 MWVYDEDVGMNCREVTFVPGLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWN 129 Query: 74 DGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELV 133 +G+GIP H E V +I L +DD+ KV+GG +G G + N S K + Sbjct: 130 NGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTV- 188 Query: 134 IQREGKIHRQIYEHGVPQAPLAVTGETEKTG---------TMVRFWPSLETFTNVTEFEY 184 + + Y+H Q + +T + T + F P L F + + + Sbjct: 189 -----ETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLAKF-KMEKLDK 242 Query: 185 EILA---KRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNK---TPIHP 238 +I+A +R +L+ GV + K+ G +++V+ K+K T + Sbjct: 243 DIVALMTRRAYDLAGSCKGVKVMFNGKK-------LPVNGFRSYVDLYVKDKLDETGVAL 295 Query: 239 NIFY-FSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYM 297 + + + E+ + + ++ + GFQ+ F N+I GG H+ + L + Sbjct: 296 KVIHELANERWDVCLTLSEK---GFQQ--ISFVNSIATTKGGRHVDYVVDQVVGKLIEVV 350 Query: 298 DKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELL 357 K+ KA VS + + ++ + +P F SQTK+ + + Q L Sbjct: 351 KKKN---KAGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMTLQPKSFGSKCQ----L 403 Query: 358 AEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQE---RD 414 +E + ++ IV I++ + + + ++ + K + + G+P KL D + + Sbjct: 404 SEKFFKAASNCGIVES-ILNWVKFKAQTQLNKKCSSVKYS-KIKGIP-KLDDANDAGGKH 460 Query: 415 PALSELYLVEGDSAGGSAKQGRN---RKNQAILPLKGKILNVEKARFDKMLSSQEVATLI 471 L L EGDSA A G R + PL+GKILNV +A +++ + E+ +I Sbjct: 461 SLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQIMENAEINNII 520 Query: 472 TALGCGIGR---DEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVY 528 +G + D + LRY I+IMTD D DGSHI+ LL+ F + P +++ G + Sbjct: 521 KIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLE 580 Query: 529 IAQPPLYKVKKGKQEQYIKDDEAMDQYQISI 559 P+ K K KQE D+++ I Sbjct: 581 EFITPIVKASKNKQELSFYSIPEFDEWKKHI 611 >UniRef50_Q04PE7 DNA topoisomerase (ATP-hydrolyzing), subunit B n=6 Tax=Leptospira RepID=Q04PE7_LEPBJ Length = 711 Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 142/627 (22%), Positives = 257/627 (40%), Gaps = 130/627 (20%) Query: 9 SIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMV-------FEVVD---------------- 45 + K L ++ VR R GM++G T H +E+V Sbjct: 17 NFKKLSNVEHVRMRTGMWLGQNSASTFEQHFFRKNNEGKYEIVHEELEDVPAKLKCLDEA 76 Query: 46 --NAIDEALAGH----------CKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAE 92 NA+DE ++IV + +D V++ D+GRGIP + AE Sbjct: 77 CMNAVDEYRKNQKDKTIPEKDKMSKLIVQLSSDRKCVTITDNGRGIPA--------ANAE 128 Query: 93 VIMTVLHAGGKFDDNSYKVS-GGLHGVGVSVVNALSQKLELVIQREGKIHRQIY------ 145 + L G FDD+ + G +GVG+S+V +S ++ G ++++ Sbjct: 129 GVYLHLMYGENFDDHVKQDHVAGQNGVGISLVRMVSNYFKVKTVNNGSSFKKLFTVHDDV 188 Query: 146 ----------------------EHG-VPQAPLAVTGETEKT------------------- 163 EHG L + +K Sbjct: 189 KKQIRSYKLSKEDIERVFLYFDEHGKFTDCNLLTKDQIDKLNSLLKKTNMQESIEKASKE 248 Query: 164 --GTMVRFWPSLETFTNV-TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEG 220 GT V F + + F N+ F +++ + L++++ N G+ ++ F ++G Sbjct: 249 DHGTSVEFELNPKYFNNLDISFNVDLMKQYLQDIAMTNPGLEVQ-----------FVFKG 297 Query: 221 GIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGF---QENIYCFTNNIPQRD 277 + + ++ H ++ Y+ + G L Q + N+I Sbjct: 298 KKEKYKFKKGLDEIFSHSDLVYYKMDYTAPGSASQLHLETYLVIGQNKNLTWVNSIFAPQ 357 Query: 278 GGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTK 337 GG+ + + + KK K S+T +D R V+ ++ +P+F SQ K Sbjct: 358 GGSAIEYLENRICDEVRKKSQIVALEKKLKTSSTRNDVRNCFHMYVNARLLNPRFKSQDK 417 Query: 338 DKLVSS---EVKSAVEQQMNELLAEY-LLENPTDAKIVVGKIIDAARAREAARRAREMTR 393 L++ ++++AV++ + + + + LLE + K+ + K +A E A++ + Sbjct: 418 SYLINDLNEDIRNAVDKHLEKFIKKTGLLE---EIKLQMEKRT-QLKAFEDAQKGLKKAS 473 Query: 394 RKGALDL---AGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKI 450 R L G PG DP L++ EGDSA + RN K + PL+GK Sbjct: 474 RMNIPKLMPPTGKPG--------DPG-RVLFVAEGDSAIAGLRPARNPKLHGLFPLRGKP 524 Query: 451 LNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLL 510 LN + K ++++E+ ++ +G + + + D+L Y + I+TDAD DG IR+L+ Sbjct: 525 LNCKGLSIAKAIANEELKNIVAIVGLPLDQKVKSVDELNYDKVSIITDADFDGYAIRSLM 584 Query: 511 LTFFYRQMPEIVERGHVYIAQPPLYKV 537 L+FFY PE+ E G ++I+ PLY+V Sbjct: 585 LSFFYEYWPELFELGFIHISSAPLYEV 611 >UniRef50_UPI0001788AA3 transcriptional regulator, ArsR family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788AA3 Length = 372 Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 65/169 (38%), Positives = 104/169 (61%), Gaps = 5/169 (2%) Query: 16 LDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDG 75 + R GMY G + G +H +++ VV+N+I E +G+ +I + +H D SV+V D+G Sbjct: 183 MSETRNNAGMYFGPSH-GFDIHQLLWAVVENSILEHTSGYGDQIGIFLHEDGSVTVTDNG 241 Query: 76 RGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNS-YKVSGGLHGVGVSVVNALSQKLELVI 134 RGIP P V + I+T +H +F++++ + V G G+ ++VVNALS++L + I Sbjct: 242 RGIPVQALPNSDVPVVQSILTDVH---RFNNSAHFLVPGAEKGISIAVVNALSKQLSVEI 298 Query: 135 QREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFE 183 +R+G I+RQ Y HG+PQ L G T++TGT V F P E F++ EF+ Sbjct: 299 RRDGNIYRQEYRHGIPQTGLLTVGLTQETGTSVTFKPETELFSSAFEFD 347 >UniRef50_Q9HGH7 DNA topoisomerase 2 (Fragment) n=1 Tax=Pichia kudriavzevii RepID=Q9HGH7_ISSOR Length = 804 Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 140/542 (25%), Positives = 239/542 (44%), Gaps = 72/542 (13%) Query: 35 GLHHMVFEVVDNAIDEALAG-HCKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAE 92 GL + E++ NA D + K I V I+ + N +SV++DG+GIP IH +E + E Sbjct: 14 GLFKIFDEILVNAADNKIRDPSMKRIDVIINEEENVISVKNDGKGIPIEIHDKENIYIPE 73 Query: 93 VIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLEL--VIQREGKIHRQIYEHGVP 150 +I L +DD+ KV+GG +G G + N S + + GK + Q++ + + Sbjct: 74 LIFGNLLTSSNYDDDQKKVTGGRNGYGAKLCNIFSTEFTVHTADMSHGKEYTQVWRNNMS 133 Query: 151 QA--PLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILA---KRLRELSFLNSGVSIRL 205 + P + + + T + F P L F + + +++IL +R+ +L G+ + L Sbjct: 134 EVGKPKILNFKKKNEFTEIIFKPDLSKF-GMEKLDHDILGVFKRRVYDLCGSVRGIRVTL 192 Query: 206 RDKRDGKEDHFHYEGGIKAFVEYLNKNK---------------TPIH----PNIFYFSTE 246 + + Y ++ +V+ +NK+K TP++ N ST Sbjct: 193 NGELLKINNFKQY---VELYVKAINKSKEERPHIPVKIETEDGTPLNGESEANTETSSTP 249 Query: 247 KDGIG--------------VEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRT 292 + + E+A +DG N F N+I GGTH+ + Sbjct: 250 EPSLNENLPTIVHEIINDRWEIAFCISDG-SFNQVSFVNSIATTLGGTHVDDVANMLCGK 308 Query: 293 LNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQ 352 + + ++ +KKA + + + ++ V +P F+ QTK+ L + K ++ Sbjct: 309 ITEQIKRK--NKKAIIKPF--QIKSKMFLFINCLVENPAFTFQTKEYLTTQLSKFGGKRL 364 Query: 353 MNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALD--LAGLPGKLADC 410 EL +++ KI+ IID A + + + GA + G P KL D Sbjct: 365 --ELPEKFI------KKILNTGIIDEVLDIVQANADKALKKTDGAKKSRITGYP-KLEDA 415 Query: 411 QE---RDPALSELYLVEGDSAGGSAKQGR---NRKNQAILPLKGKILNVEKARFDKMLSS 464 + R+ L L EGDSA A QG R PL+GK+LNV +A D+++ + Sbjct: 416 NKAGTREGYKCTLILTEGDSAKSLAVQGLAVVGRNYYGCFPLRGKVLNVREASTDQIMKN 475 Query: 465 QEVATLITALGCGIGRDEYNPD---KLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEI 521 + + +G + Y PD LRY I+IM D D DGSHI+ LL+ F P + Sbjct: 476 GAIQAIKQIMGLQ-HKKHYGPDDIKSLRYGRIMIMADQDHDGSHIKGLLINFLEASFPGL 534 Query: 522 VE 523 +E Sbjct: 535 LE 536 >UniRef50_P06786 DNA topoisomerase 2 n=27 Tax=Fungi/Metazoa group RepID=TOP2_YEAST Length = 1428 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 153/591 (25%), Positives = 264/591 (44%), Gaps = 93/591 (15%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDT----------DDGT------------GLHHMVFEVV 44 S + + L+ + KRP YIG D+ T GL + E++ Sbjct: 9 SDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEIL 68 Query: 45 DNAIDEALAG-HCKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGG 102 NA D + K I V IHA+ +++ V++DG+GIP IH +E + E+I L Sbjct: 69 VNAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSS 128 Query: 103 KFDDNSYKVSGGLHGVGVSVVNALSQK--LELVIQREGKIHRQIYEHG--VPQAPLAVTG 158 +DD+ KV+GG +G G + N S + LE G+ + Q +E+ + P + Sbjct: 129 NYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPPKITSY 188 Query: 159 ETEKTGTMVRFWPSLETFTNVTEFEYEILA----------KRLRELSFLNSGVSIRLRDK 208 + + T V F P L F + E + +IL +R+++ +G S+++R+ Sbjct: 189 KKGPSYTKVTFKPDLTRF-GMKELDNDILGVMRRRVYDINGSVRDINVYLNGKSLKIRN- 246 Query: 209 RDGKEDHFHYEGGIKAFVEYLNKN-----------KTPIHPNIFYFSTEKDGIGVEVALQ 257 ++ ++ +++ L K K+ I P I Y E+ EVA Sbjct: 247 ---------FKNYVELYLKSLEKKRQLDNGEDGAAKSDI-PTILY---ERINNRWEVAFA 293 Query: 258 WND-GFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAR 316 +D FQ+ F N+I GGTH+ + + ++ + K+ + Sbjct: 294 VSDISFQQ--ISFVNSIATTMGGTHVNYITDQIVKKISEILKKKKKKSVKSFQI-----K 346 Query: 317 EGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLE-NPTDAKIVVGKI 375 + ++ + +P F+SQTK++L ++ VK + E+ EY+ + TD + +I Sbjct: 347 NNMFIFINCLIENPAFTSQTKEQL-TTRVKDFGSR--CEIPLEYINKIMKTDLATRMFEI 403 Query: 376 IDAARAREAARRAREMTRRKGALDLAGLPGKLADCQE---RDPALSELYLVEGDSA---- 428 DA E A + + TR+ + P KL D + ++ L L EGDSA Sbjct: 404 ADANE--ENALKKSDGTRKSR---ITNYP-KLEDANKAGTKEGYKCTLVLTEGDSALSLA 457 Query: 429 -GGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDK 487 G A GR+ PL+GK+LNV +A D++L + E+ + +G + + Sbjct: 458 VAGLAVVGRDY--YGCYPLRGKMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKS 515 Query: 488 LRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVE-RGHVYIAQPPLYKV 537 LRY ++IMTD D DGSHI+ L++ F P +++ +G + P+ KV Sbjct: 516 LRYGHLMIMTDQDHDGSHIKGLIINFLESSFPGLLDIQGFLLEFITPIIKV 566 >UniRef50_Q8HFR9 DNA topoisomerase 2 n=1 Tax=Bodo saltans RepID=Q8HFR9_9EUGL Length = 1247 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 144/581 (24%), Positives = 234/581 (40%), Gaps = 73/581 (12%) Query: 11 KVLKGLDAVRKRPGMYIGDT----------------------DDGTGLHHMVFEVVDNAI 48 K L +D V RP MY+G D GL + E+V NA Sbjct: 6 KKLSPIDHVLLRPEMYVGSVESQPIQLFLLDDQHSKVEWTTADLNHGLLKIFDEIVLNAA 65 Query: 49 DE---ALAGHCKEIIVTI-HADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKF 104 D + I VTI ++V++DG GIP + + E+I L + Sbjct: 66 DNIHNSKRNPMTFINVTIDETTGQITVENDGAGIPLVKSKDHKLLIPEMIFGHLLTSSNY 125 Query: 105 DDNSYKVSGGLHGVGVSVVNALSQKLELVIQ---REGKIHRQIYEHGVPQAPLAVTGETE 161 D++ +S G HG G + N +SQ+ + + +E I + + + T E Sbjct: 126 DNDPDSMSAGRHGYGAKLTNIMSQEFIVYCRTADKEVTIRWTDHMRSIDDYQVQPTNEAG 185 Query: 162 KTGTMVRFWPSLETF--TNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYE 219 T + F P F T +T+ Y IL KR+ +L+ V++ D + Sbjct: 186 NL-TKITFTPDFSVFGVTKLTKDMYRILHKRILDLAAAFPSVTVSFNGT---ALDVGSFA 241 Query: 220 GGIKAFVEYLNKNKTPIHPNI---------------FYFSTEKDGIGVEVALQWNDGFQE 264 +K F + P P + F F E + + Q Sbjct: 242 SYVKLFEAPASLFSAPTAPVVADGDAAPPPAELNKPFLF--EVKHLRLAFIPQPQASVSR 299 Query: 265 NIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVS 324 + N + GGTH+ + +T ++A + ++ KK + T + VV Sbjct: 300 RTFAVVNGVVTYSGGTHVQAAQQILTDAVDALVAQK---KKEGIIVTVNTFLRYFTTVVF 356 Query: 325 VKVPDPKFSSQTKDKLVSSEVKSA---VEQQMNELLAEYLLENPTDAKI-VVGKIIDAAR 380 ++ PKF SQ+K +LVS +VK Q + L L + + ++ V+ K ++A Sbjct: 357 LETTQPKFDSQSKVRLVS-KVKFPRFPTGQLVEHLATMTFLSDASKGQMDVLNKELNALI 415 Query: 381 AREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQG---RN 437 RR T K +D A G ++ + L + EGDSA A Sbjct: 416 QVSGKRRPMISTLTK-LVDAASAGGSGSEIRT-------LIVTEGDSAKALALNSLSNEQ 467 Query: 438 RKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMT 497 RK + PL+GK+LNV ++ +E+ L ALG IGR + + LRY +++MT Sbjct: 468 RKYFGVFPLRGKLLNVRNNNLARLKKCKELCDLFAALGIEIGRRYTSTESLRYQRLLVMT 527 Query: 498 DADVDGSHIRTLLLTFFYRQMPEIVER--GHVYIAQPPLYK 536 D D DG+HI+ LL++ F P +++ G + I PL + Sbjct: 528 DQDADGTHIKGLLISAFESLWPSLLQHSLGFISIFSTPLIR 568 >UniRef50_A7TEE2 DNA topoisomerase 2 n=1 Tax=Vanderwaltozyma polyspora DSM 70294 RepID=A7TEE2_VANPO Length = 1404 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 144/537 (26%), Positives = 242/537 (45%), Gaps = 56/537 (10%) Query: 35 GLHHMVFEVVDNAIDEALAG-HCKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAE 92 GL + E++ NA D + K I V I+ + N + +++DG+GIP IH +E + E Sbjct: 59 GLFKIFDEILVNAADNKVRDPSMKRIDVNINPEENLIEIKNDGKGIPIEIHDKEKIYIPE 118 Query: 93 VIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQK--LELVIQREGKIHRQIYEHGVP 150 +I L +DD+ KV+GG +G G + N S + LE GK + Q +E + Sbjct: 119 LIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADPSTGKKYIQRWEDNMN 178 Query: 151 QA-PLAVTGETEKTG-TMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDK 208 P +T T T V F P L+ F + + + +++ R + +N V RD Sbjct: 179 TCHPPKITSYKNSTSYTKVSFKPDLKRF-KMEKLDDDVVGVMRRRVYDINGSV----RDI 233 Query: 209 R---DGKEDHF-HYEGGIKAFVEYLNKNKTPIH---------PNIFYFSTEKDGIGVEVA 255 DGK +++ ++ +++ L K K P I Y EK EVA Sbjct: 234 NVYLDGKPLKIRNFKSYVELYLKSLEKKKLTESGESTEDLQTPTILY---EKVNDRWEVA 290 Query: 256 LQWNDG-FQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDD 314 ++ FQ+ F N+I GGTH+ + + ++ E KK+K + Sbjct: 291 FSSSEASFQQ--VSFVNSIATTSGGTHVNYITDQIVKKVS-----EAIKKKSKKTVKPFQ 343 Query: 315 AREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGK 374 + + ++ + +P F+SQTK++L + + +++ + +++ TD K Sbjct: 344 IKNNMFIFINSLIENPAFTSQTKEQLTTRVRDFGSKCELSNVFINKIMK--TD---FFDK 398 Query: 375 IIDAARAREA-ARRAREMTRRKGALDLAGLPGKLADCQE---RDPALSELYLVEGDSAGG 430 I+D A + A + + TR+ + + P KL D + ++ L L EGDSA Sbjct: 399 ILDVANQNDQNALKKSDGTRK---IRITEYP-KLEDANKAGTKEGHKCTLILTEGDSALS 454 Query: 431 SAKQGRN---RKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDK 487 A G R PL+GK+LNV +A D++ + E+ + +G + + Sbjct: 455 QAVLGLTVVGRDYFGCYPLRGKMLNVREASADQINKNAEIEAIKKIMGLQHKKKYEDTKS 514 Query: 488 LRYHSIIIMTDADVDGSHIRTLLLTFFYRQMP---EIVERGHVYIAQPPLYKVKKGK 541 LRY ++IMTD D DGSHI+ L++ F P I E +I P+ KVK K Sbjct: 515 LRYGHLMIMTDQDHDGSHIKGLIINFLETSFPGLLNIPEFLQEFIT--PIIKVKISK 569 >UniRef50_C3RSA4 DNA gyrase subunit B (Fragment) n=3 Tax=Lactobacillales RepID=C3RSA4_9ENTE Length = 156 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 65/154 (42%), Positives = 93/154 (60%), Gaps = 7/154 (4%) Query: 127 SQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-----KTGTMVRFWPSLETFTNVTE 181 S+KLE+ + + GK++ Q ++ G A L V GETE GT V F P E F TE Sbjct: 1 SEKLEVKVFKNGKVYYQDFKRGKINADLKVIGETELHGTEVHGTEVHFVPDPEIFNETTE 60 Query: 182 FEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHPN 239 F ++ LA R+REL+FLN G+ I + D+R + + +HYEGGIK++VE+LN NK + P Sbjct: 61 FNFDKLATRIRELAFLNRGLHISIEDRRPEEPLFNQYHYEGGIKSYVEHLNANKEVLFPE 120 Query: 240 IFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNI 273 Y ++ I VEV++Q+ D F N+ F NNI Sbjct: 121 PIYLEGQQQDINVEVSIQYTDSFHTNLMTFANNI 154 >UniRef50_Q5UQE6 DNA topoisomerase 2 n=3 Tax=root RepID=TOP2_MIMIV Length = 1263 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 131/513 (25%), Positives = 217/513 (42%), Gaps = 35/513 (6%) Query: 35 GLHHMVFEVVDNAID-EALAGHCKEIIVTI-HADNSVSVQDDGRGIPTGIHPEEGVSAAE 92 GL+ + EV+ NA D C I V I +SV ++G GI IH E + Sbjct: 69 GLYKIYDEVIVNAADHNKRCQTCNIIKVDIDQKTGQISVWNNGDGIDVAIHKEHNIWVPS 128 Query: 93 VIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQK--LELVIQREGKIHRQIYEHGV- 149 +I L +D N K GG +G G + N S + +E V +GK Q + + + Sbjct: 129 MIFGELLTSTNYDKNEEKTVGGKNGFGAKLANIYSVEFTIETVDANKGKKFFQRFTNNMY 188 Query: 150 -PQAPLAVTGETEKTGTMVRFWPSLETF--TNVTEFEYEILAKRLRELSFLNSGVSIRLR 206 + P ++ + + T + F P + F + + + KR+ +L+ + + + Sbjct: 189 DKEEP-KISSFKKSSYTKITFIPDFKKFGLKCLDDDTLALFKKRVFDLA-MTTNAKVYFN 246 Query: 207 DKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENI 266 DK+ + + Y G + +++K I T + V V D + Sbjct: 247 DKQIVQNNFKKYVG---LYFPEGSQHKVVID------DTTHERWKVGVIYDPTDQLEHQN 297 Query: 267 YCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAK-VSATGDDAREGLIAVVSV 325 F N+I GGTH+ + L K KKAK V +E LI V Sbjct: 298 ISFVNSICTSRGGTHVEQVVGQIVNGL-----KTAIVKKAKNVQIKPAMIKENLIFFVDA 352 Query: 326 KVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAA 385 + +P F +QTK+ L + ++ E + +++ V +II A+ARE A Sbjct: 353 TIVNPDFDTQTKEYLTKKAANFGSKFEVTEKFIKGVIKTG-----VCDQIIANAKAREEA 407 Query: 386 RRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRN---RKNQA 442 ++ + +G + L ++ L L EGDSA A G N R Sbjct: 408 NLSKTDGKGRGPVRYEKLYN-AHKAGTKEGYKCTLILTEGDSAKTFAMSGLNVIGRDYYG 466 Query: 443 ILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVD 502 + PL+GK+LNV A K+ ++E+ + +G G+ + LRY SI+I+ D DVD Sbjct: 467 VFPLRGKLLNVRDASPKKIADNEEITAIKKIVGLEQGKVYDDLKGLRYGSIMILADQDVD 526 Query: 503 GSHIRTLLLTFFYRQMPEIVE-RGHVYIAQPPL 534 G HI+ L++ F + P +V+ G + PL Sbjct: 527 GYHIKGLIMNFIHCFWPSLVKYEGFIQSFATPL 559 >UniRef50_Q9QSK1 DNA topoisomerase 2 n=1 Tax=Invertebrate iridescent virus 6 RepID=TOP2_IIV6 Length = 1132 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 148/579 (25%), Positives = 245/579 (42%), Gaps = 84/579 (14%) Query: 35 GLHHMVFEVVDNAID-----EALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVS 89 L + EV+ NA+D + + CK I + I D + + +DG+ I +G+ Sbjct: 57 ALIRIFVEVLANAVDNIHRSKGSSTPCKSIKIKIEDDGTTMIHNDGQVIKISKEENDGIE 116 Query: 90 AA---------EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELV---IQRE 137 E++ L + +DD + + G +G+GV N LS+ +++ + + Sbjct: 117 INGKKCSVYNHELVFGHLRSSSNYDDTVVRQTSGKNGLGVKCTNILSKSFKVIGVDPENK 176 Query: 138 GKIHRQIYEHGVPQAPLAVTGETEKTG-TMVRFWPSLETFTNVTEFEYEILAKRLRELSF 196 K ++ + + VT + KTG T V + P E N + I K + +++ Sbjct: 177 KKFVQEWTNNMKETSGPKVTTSSSKTGYTEVIYCPDFERLGNFSSDIIGIFRKHVLDVAM 236 Query: 197 LNS--GVSIRLRDKRDGKEDHFHYEGGIKAFVEY-----LNKNKTPIHPNIFYFSTEKDG 249 L S GVS+ DK+ IK F +Y L K I TE+DG Sbjct: 237 LASSEGVSVYFNDKK----------LPIKKFSDYTKLFKLEKESISI--------TEEDG 278 Query: 250 IG-VEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKV 308 V +A DG ++ I F N + + GG H+ G+ L + ++K + K + Sbjct: 279 SSEVTIAFVERDGKKKPI-SFVNGLFTKHGGQHVDGWTKPFFANLLSVLNKPSKTYK-DL 336 Query: 309 SATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYL----LEN 364 + D V V P+F Q K+ L S +K + ++ + ++ L+ Sbjct: 337 KLSLKDVTPYFRFFVKSTVDKPQFDCQNKNMLKSPCLKYTIPDKIITKVCKWTSVQELKQ 396 Query: 365 PTDAKIVVGKIIDAARA-REAARRAREMTRRKGALDLAGLP----GKLADCQERDPALS- 418 + K++ GK + + + RR + + + AG L C+ LS Sbjct: 397 SSFEKLLKGKDNNIIKTLNDKKRRPKVSVKEYDPANKAGTTLSEKCTLIVCE----GLSA 452 Query: 419 ELYLVEGDSAGGS-----AKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITA 473 + Y V G S G S K+GR+ ILPL+GK LNV A DKM+ + V L+ A Sbjct: 453 KTYAVAGISTGISFTGTDTKKGRDW--FGILPLRGKFLNVRNANNDKMIKNTVVTDLVNA 510 Query: 474 LGCGIGRDEYNPDK----LRYHSIIIMTDADVDGSHIRTLLLTFFYRQ--------MPEI 521 +G G D Y+ K L Y SIII+ D D DG HI L+L FF+ +P + Sbjct: 511 MGLTFGMD-YSTQKSRKSLNYGSIIIIPDPDEDGIHIEGLVLNFFHHHFSSLFNPVVPNL 569 Query: 522 VERGHVYIAQPPLYKV----KKGKQEQYIKDDEAMDQYQ 556 + + + P+ KV KG++E EA +++ Sbjct: 570 KDFPFISSMKIPIIKVIEKPLKGRREIEFFTHEAFHKFK 608 >UniRef50_C7U0P4 DNA topoisomerase II n=2 Tax=unclassified Phycodnaviridae RepID=C7U0P4_9PHYC Length = 1072 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 146/592 (24%), Positives = 245/592 (41%), Gaps = 82/592 (13%) Query: 9 SIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDE-------ALAGHCKEIIV 61 S++ L ++ V KRP Y+G + G + +F+ DN + AL EI+V Sbjct: 4 SVQKLTHIEHVLKRPDSYVGPVEIGCE-PYWIFQKTDNQFKKKSLNYSPALLKIFDEILV 62 Query: 62 TIHADNS-------------------VSVQDDGR--GIPTGIHPEEGVSAAEVIMTVLHA 100 NS V+++++G G+ +H +EG+ E+ L Sbjct: 63 NAIDRNSLHPKSCTLISAGIDKETGAVTIENNGPLGGVGVRMHEKEGIWNPELTFGHLLT 122 Query: 101 GGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQ--REGKIHRQIYEHGVPQA-PLAVT 157 +DDN ++ GG +G G + N S + +VI+ + + Q + + + P +T Sbjct: 123 STNYDDNKKRIVGGRNGYGAKLTNIYSSEFSIVIKDGETKQCYTQKWNNNMTVCHPPKIT 182 Query: 158 GETEKTGTM-VRFWPSLETF--TNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKED 214 + T ++ + F P + F + Y+I KR+ + + + + +++ Sbjct: 183 KHSASTSSVSITFIPDWKRFGMNKMDNNIYKIFEKRVWDANICTTP-NCKVK-------- 233 Query: 215 HFHYEGGIKAFVEYLNKNKTPIHPNIFYFST-EKDGIGVEVALQWNDGFQENIYCFTNNI 273 F E K E K +H + S+ D V + N G ++ F N I Sbjct: 234 -FQGEALPKTSFEAYAK----MHEGVSEVSSVTTDRWSVCIGPSEN-GLEQ--VSFVNGI 285 Query: 274 PQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFS 333 GGTH+ + + + M K+ K +V T + V + +P FS Sbjct: 286 CTTKGGTHVDHVASYIASGIIDEMAKKIKLKPQQVKNTFN-------IFVKATLENPTFS 338 Query: 334 SQTKDKLVSS--EVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREM 391 SQ K + S + S E N ++N I + A + +E+ Sbjct: 339 SQVKSECTSKAQDFGSKFEPPKN------FVKNALKTGIQ-----EELTALSKFKEMKEL 387 Query: 392 TRRKGALD--LAGLPGKLADCQERDPALS---ELYLVEGDSAGGSAKQGRN---RKNQAI 443 + GA + G+P KL D + A S L + EGDSA A G + R + + Sbjct: 388 KKTDGARKSKITGIP-KLDDANKAGTAQSGKCTLIVTEGDSAKTLAVAGLSVVGRDHYGV 446 Query: 444 LPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDG 503 PL+GK NV A ++ S+QE L LG G+D + +LRY ++IMTDAD DG Sbjct: 447 FPLRGKCKNVRDASVAQLTSNQEFNDLKKILGLQQGKDYQDVSELRYGRLMIMTDADNDG 506 Query: 504 SHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQY 555 SHI+ L+L + P +++ G V P+ K KG Q + D A + Sbjct: 507 SHIKGLILNMIHYFWPSLLKLGFVVSMVTPIIKASKGTQSKSFYTDSAFRSW 558 >UniRef50_Q9FYE9 DNA gyrase subunit B-like protein n=3 Tax=Arabidopsis thaliana RepID=Q9FYE9_ARATH Length = 257 Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 73/235 (31%), Positives = 122/235 (51%), Gaps = 15/235 (6%) Query: 201 VSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWN- 259 VS+ + D KE + Y G+ FV +LN +K P+H ++ F E +G + +ALQW Sbjct: 23 VSLEMEDNDPNKE--YLYAKGLSEFVTWLNADKKPLH-DVLGFRKEINGTTINIALQWCV 79 Query: 260 DGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGL 319 DG+ I + N I DGGT++ G +A++TRTLN+ ++K + + T + EGL Sbjct: 80 DGYSNKILGYANGIRTMDGGTYIDGVKASITRTLNSLVEKSKLVEDKDIIFTEEHVMEGL 139 Query: 320 IAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAA 379 +VSV VP P+F QT+ +L + V+ V+Q + E L E +P + ++ K +A Sbjct: 140 TCIVSVIVPKPEFEGQTQ-RLGNPNVREIVDQSVQECLMESFELHPDVFESIMSKSYNAY 198 Query: 380 RAREAARRAREMTRRKG---ALDLAGLPGKLADCQERDPALS-------ELYLVE 424 + A +RAR++ + + +P KL + +S ELYL++ Sbjct: 199 KTDLAVKRARDVYSSESVAMVCAIESIPMKLTNSSSETSGMSFELKSEKELYLIK 253 >UniRef50_P41001 DNA topoisomerase 2 n=10 Tax=Eukaryota RepID=TOP2_PLAFK Length = 1398 Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 85/299 (28%), Positives = 148/299 (49%), Gaps = 15/299 (5%) Query: 253 EVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATG 312 E+ + +DG Q F N+I GG+H+ + + L++ K K + Sbjct: 332 EIVVSKSDGSQFQQVSFVNSICTTKGGSHV---NYIVEQLLSSLSKKANAKNKGGMEIKS 388 Query: 313 DDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVV 372 R L V+ + +P F SQTK+ L + VK + +++ +L++P + I++ Sbjct: 389 GHIRNHLWVFVNCLIVNPTFDSQTKETLTTKPVKFGSKCILSDKTINNVLKSPILSNILL 448 Query: 373 GKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSE---LYLVEGDSAG 429 A+A+ ++ + K + G+P KL D + S+ L L EGDSA Sbjct: 449 WA---QAKAQVELKKKMKAGSSKARERIIGIP-KLEDANDAGSKYSQECTLILTEGDSAK 504 Query: 430 GSAKQGRN---RKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI-GRDEYNP 485 S G + R + PLKGK+LNV A F +++ ++E+ + +G I +++ + Sbjct: 505 TSCLAGLSIVGRDKYGVFPLKGKLLNVRDASFKQLMDNKEIQNIFRIMGLDITDKNKDDI 564 Query: 486 DKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVE-RGHVYIAQPPLYKVKKGKQE 543 LRY S++IMTD D DGSHI+ LL+ ++ P +++ +G + P+ KV+KG QE Sbjct: 565 KGLRYGSLMIMTDQDYDGSHIKGLLINMIHKFWPSLLKHKGFLSEFVTPIVKVQKGSQE 623 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 9/108 (8%) Query: 35 GLHHMVFEVVDNAID------EALAGHCKEIIVTIHADNS-VSVQDDGRGIPTGIHPEEG 87 GL+ + E++ NA D E I + I+ +N +SV +DG GIP IH E Sbjct: 58 GLYKIFDEIIVNAADVKAREKEKSENPMTCIKIEINKENKRISVYNDGEGIPVDIHKEMN 117 Query: 88 VSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQ 135 + +I L +DD +++GG +G G + N S+ E ++Q Sbjct: 118 IYVPHMIFGELLTSDNYDDAEDRITGGRNGFGAKLTNIFSK--EFIVQ 163 >UniRef50_Q5CQG8 DNA topoisomerase 2 n=4 Tax=Apicomplexa RepID=Q5CQG8_CRYPV Length = 1797 Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 92/319 (28%), Positives = 148/319 (46%), Gaps = 28/319 (8%) Query: 238 PNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYM 297 P I Y S K E+ + +DG Q F N+I GGTH++ + +NA + Sbjct: 407 PLIIYESVPK----WEIVISESDGGQFQHVSFVNSICTIKGGTHIS---YVLDPLINAIL 459 Query: 298 DKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSS-----EVKSAVEQQ 352 K K + + + + + + +P F SQTK+ L + V + E+ Sbjct: 460 KKVQTKNKGGMDVKSNHVKNHIWIFIKCLIVNPSFDSQTKETLTTKVSKFGSVCTLSEKT 519 Query: 353 MNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQE 412 +N ++ ++EN V ++ E ++ + + L G+P KL D E Sbjct: 520 INSVVKSSIVEN-------VLMWAQLKQSMELKKKMKSNQKNTVTSRLLGIP-KLEDANE 571 Query: 413 RDPALSE---LYLVEGDSAGGSAKQGRN---RKNQAILPLKGKILNVEKARFDKMLSSQE 466 S+ L L EGDSA S G + R + PL+GK+LNV +A F + + + E Sbjct: 572 AGGPHSKKCTLILTEGDSAKTSCLAGLSIVGRDYFGVFPLRGKLLNVREASFKQQIGNVE 631 Query: 467 VATLITALGCGIGRDEYN-PDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVE-R 524 + ++ LG GIG+ N P LRY S+++MTD D DGSHI+ L++ + P ++ R Sbjct: 632 IQNILKILGLGIGQKYDNGPVNLRYGSLMLMTDQDHDGSHIKGLIINLIHYYWPSLIHFR 691 Query: 525 GHVYIAQPPLYKVKKGKQE 543 G + P+ K KKG E Sbjct: 692 GFLKQFVTPIVKAKKGSNE 710 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 61/224 (27%), Positives = 97/224 (43%), Gaps = 41/224 (18%) Query: 22 RPGMYIGDT----------DDGT------------GLHHMVFEVVDNAID---------- 49 RP YIG T DD GL+ + E++ NA D Sbjct: 49 RPDTYIGSTEFHEQALWVWDDSNMKMVYKTINYVPGLYKIFDEILVNAADVKAREISTKN 108 Query: 50 EALAGHCKEIIVTIHADNS-VSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNS 108 + C I V I+ + ++V +DG GIP IH E V E+I L +DDN Sbjct: 109 NHIFEKCTCIKVEINREKKEITVFNDGEGIPIEIHREHQVYVPELIFGHLLTSDNYDDNE 168 Query: 109 YKVSGGLHGVGVSVVNALSQ--KLELVIQREGKIHRQIYEHGVPQAPLAVTGE--TEKTG 164 +V+GG +G G + N S+ K+E G+I + + + + E + K+ Sbjct: 169 DRVTGGRNGFGAKLTNIFSKEFKVECGDNNTGRIFKMTWYDNMSKKSEENIKENYSGKSY 228 Query: 165 TMVRFWPSLETFTNVTEFEYEILA---KRLRELSFLNSGVSIRL 205 + F P L F N+ +F+ +I++ KR+ ++S SGV + L Sbjct: 229 VKITFKPDLSRFGNMKDFDDDIISLLNKRVYDISG-TSGVKVYL 271 >UniRef50_UPI0001908742 DNA topoisomerase IV subunit B n=1 Tax=Rhizobium etli IE4771 RepID=UPI0001908742 Length = 200 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 60/105 (57%), Positives = 75/105 (71%), Gaps = 2/105 (1%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 S+ Y +SSI+VL+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DEA+AGH I V Sbjct: 97 SDEYGASSIRVLEGLEPVRMRPGMYIGGTDE-KALHHLFAEVIDNAMDEAVAGHANFIEV 155 Query: 62 TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFD 105 + ++V D+GRGIP HP+ G S EVIMT LHAGGKFD Sbjct: 156 HLDLQGYLTVTDNGRGIPVENHPQVPGKSTLEVIMTKLHAGGKFD 200 >UniRef50_C4R475 DNA topoisomerase 2 n=1 Tax=Pichia pastoris GS115 RepID=C4R475_PICPG Length = 1344 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 139/561 (24%), Positives = 241/561 (42%), Gaps = 67/561 (11%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTDDGTG---LHHMVFEVVDNAIDEALAGHCK---EII 60 S + L L+ + KRP YIG + +++ E ++ + + G K EI+ Sbjct: 64 SDQYQKLSQLEHILKRPDTYIGSVEKHESEQWIYNKETESMERKVVSIVPGLFKIFDEIL 123 Query: 61 VTIHADNSVSVQDDGRGIPTGIHPEEGV-----SAAEVIMTVLHAGGKFDDNSYKVSGGL 115 V ADN + + I I PEE + E+I L ++D+ KV+GG Sbjct: 124 VNA-ADNKIR-DPSMKNIEVTIKPEENLIEVKNDGKELIFGNLLTSSNYNDDQKKVTGGR 181 Query: 116 HGVGVSVVNALSQKL--ELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTG--TMVRFWP 171 +G G + N S + E + GK++ Q + + + V +K T V F P Sbjct: 182 NGYGAKLCNIFSTEFIVETYDKSSGKLYTQRWSQNMGKTDKPVIKSIKKATEYTKVSFRP 241 Query: 172 SLETFTNVTEFEYEILA---KRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEY 228 L F N+TE + +IL +R+ +L +S++L ++ + Y ++ +V+ Sbjct: 242 DLAKF-NMTELDEDILGVLRRRVFDLCGSVRDISVKLNGEKLKIRNFKQY---VEMYVKA 297 Query: 229 LNKNKTPIHP---------------NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNI 273 L PI + T D E+A +D N F N+I Sbjct: 298 LEHKNDPIKTEDSSLLPPPSSSSPSQTIVYQTLNDRW--EIAFAVSDS-TFNQVSFVNSI 354 Query: 274 PQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFS 333 GGTH+ + + + + + +KKA + + + ++ V +P F+ Sbjct: 355 ATTSGGTHVNFIADQIVKKIEKEIKTK--NKKAMIKPF--QIKNNMFLFINCLVENPAFT 410 Query: 334 SQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTR 393 SQTK++L + S + E+ +++ KI+ I+DA A + + + Sbjct: 411 SQTKEQLTTRA--SQFGGKKTEVPDDFI------KKILRTGIVDAILDIAAMNADKALKK 462 Query: 394 RKGALD--LAGLPGKLADCQE---RDPALSELYLVEGDSAGGSAKQGR---NRKNQAILP 445 G+ + G P KL D + ++ L L EGDSA A G R + P Sbjct: 463 NDGSRKNRITGYP-KLEDANKAGTKEGYKCTLILTEGDSASSLAVAGLAVVGRDYYGVYP 521 Query: 446 LKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNP---DKLRYHSIIIMTDADVD 502 L+GK+LNV +A D+++ + E+ + +G + Y P + LRY I+IMTD D D Sbjct: 522 LRGKMLNVREASADQIMKNAEIQAIKQIMGFQ-HKKNYTPENINSLRYGHIMIMTDQDHD 580 Query: 503 GSHIRTLLLTFFYRQMPEIVE 523 GSHI+ L++ F P +++ Sbjct: 581 GSHIKGLIINFLESSFPGLLK 601 >UniRef50_P09176 DNA topoisomerase large subunit n=13 Tax=T4-like viruses RepID=TOPL_BPT4 Length = 516 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 130/520 (25%), Positives = 231/520 (44%), Gaps = 93/520 (17%) Query: 8 SSIKVLKGLDAVRKRPGMYIGDTDDGT----------------GLHHMVFEVVDNAIDEA 51 + IK+L ++ ++KR GMYIG + + T GL ++ E++DN++DE Sbjct: 4 NEIKILSDIEHIKKRSGMYIGSSANETHERFMFGKWESVQYVPGLVKLIDEIIDNSVDEG 63 Query: 52 LAGHCK---EIIVTIHADNSVSVQDDGRGIPTGIHPE---EGVSAAEVIMTVLHAGGKFD 105 + K +I VTI +N V+V+D+GRGIP + E + T+ AGG F Sbjct: 64 IRTKFKFANKINVTI-KNNQVTVEDNGRGIPQAMVKTPTGEEIPGPVAAWTIPKAGGNFG 122 Query: 106 DNSYKVSGGLHGVGVSVVNALSQKL---------ELVIQREGKIHRQIYEHGVPQAPLAV 156 D+ +V+GG++GVG S+ N S +V++ + + +E + Sbjct: 123 DDKERVTGGMNGVGSSLTNIFSVMFVGETGDGQNNIVVRCSNGMENKSWED--------I 174 Query: 157 TGETEKTGTMVRFWPSLETF-TN-VTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKED 214 G+ + GT V F P +F TN +++ +I RL+ L+ + + K+ Sbjct: 175 PGKWK--GTRVTFIPDFMSFETNELSQVYLDITLDRLQTLAVVYPDIQFTFNGKK----- 227 Query: 215 HFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIP 274 +G K + +++ E++ + V DGF++ Y NNI Sbjct: 228 ---VQGNFKKYARQYDEHA---------IVQEQENCSIAVGRS-PDGFRQLTY--VNNIH 272 Query: 275 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVK-VPDPKFS 333 ++GG H+ AM + + +K K+ T +E L V+ V+ + + + Sbjct: 273 TKNGGHHID---CAMDDICEDLIPQ--IKRKFKIDVTKARVKECLTIVMFVRDMKNMRLI 327 Query: 334 SQTKDKLVS--SEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREM 391 QTK++L S E++S ++ L A+ + + + + ++ II+AA AR+ A Sbjct: 328 RQTKERLTSPFGEIRSHIQ-----LDAKKISRDILNNEAILMPIIEAALARKLAAEKAAE 382 Query: 392 TRRKGALDL--------AGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAI 443 T+ A L GK AD + L+L EGDSA G R+++ Sbjct: 383 TKAAKKASKAKVHKHIKANLCGKDAD--------TTLFLTEGDSAIGYLIDVRDKELHGG 434 Query: 444 LPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEY 483 PL+GK+LN + ML ++E+ + G +G + Sbjct: 435 YPLRGKVLNSWGMSYADMLKNKELFDICAITGLVLGEKAF 474 >UniRef50_Q76Z86 Topoisomerase II large subunit n=1 Tax=Aeromonas phage Aeh1 RepID=Q76Z86_9CAUD Length = 613 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 158/603 (26%), Positives = 259/603 (42%), Gaps = 101/603 (16%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTDDGT----------------GLHHMVFEVVDNAIDE 50 S KVL + MYIG T T GL + EV+DN++DE Sbjct: 2 SQEFKVLSDKEHCLINTDMYIGSTSTETHDVLVDGKFVQIAYVPGLVKITDEVIDNSVDE 61 Query: 51 ALAG---HCKEIIVTIHADNSVSVQDDGRGIPTG-IHPEEGVSAAEVI--MTVLHAGGKF 104 A+ H +I V I DN VSV+D+GRG+P G + EGV + T AG F Sbjct: 62 AIRTNFEHANQIEVVI-KDNQVSVKDNGRGLPQGMVVTPEGVEVPLPLAAWTRARAGSNF 120 Query: 105 DDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQA-PLAVTGETEK- 162 + + G +GVG ++ N S + G + A ++ T + K Sbjct: 121 SADRKTI--GKNGVGSALTNFFSDSF---VGETGNGTNTVTVRCTNNADEVSYTTKAGKF 175 Query: 163 TGTMVRFWPSLETFTNVT---EFEYEILAKRLRELSFLNSGVSIRLRDKR-DGKEDHFHY 218 GT V F P F +FE +++ RL L+ ++ + K+ +GK F Sbjct: 176 KGTNVTFVPDFTRFGVFQLDEDFE-QVIQSRLLTLAVNFPPITFKYNGKKVEGKFSKFAA 234 Query: 219 EGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDG 278 + F + ++ N + ++F+ ++E + F N + + G Sbjct: 235 Q-----FGDVVSHNDDNV--SLFFATSE----------------EYRQLSFVNGVHTKQG 271 Query: 279 GTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVK-VPDPKFSSQTK 337 G H+ G +++ L + ++ K+ +E L+ + ++ + PK+ QTK Sbjct: 272 GNHVYGVLDSLSDELIPMI-----KRQHKIEINKARIKECLLIGLFIRNLVAPKYDGQTK 326 Query: 338 DKLVSSEVKSAVEQQMN---ELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRR 394 ++L S + + MN + LA +L+ P V+ II +A A++ A T+ Sbjct: 327 ERLSSPWAQ--IRDHMNLDYKALARKILKTPE----VIDPIIASALAKKEAADKAAATKA 380 Query: 395 KGA---------LDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILP 445 + + AGL G+L + L+L EGDSA G + RN + Q P Sbjct: 381 QKKAKKANVAKHVAAAGL-GRLK---------TMLFLAEGDSAIGPFTRFRNEETQGSYP 430 Query: 446 LKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDG-S 504 L+GK+LNV ++L ++E+A L+ L + R + P Y I IMTDAD DG Sbjct: 431 LRGKMLNVWNLPDHEVLKNKEIADLLGILNVEL-RSKEAP---AYTDIAIMTDADQDGKG 486 Query: 505 HIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGA 564 I L + FFY+ P E+G ++I + P Y GK+ + + D+++ S DG Sbjct: 487 SIAMLAIAFFYKFWPHWFEQGRIHIVRTPEYISTNGKKTDW---SYSRDEFR-SKKFDGK 542 Query: 565 TLH 567 H Sbjct: 543 WTH 545 >UniRef50_C8XUB6 Topoisomerase II large subunit n=1 Tax=Shigella phage phiSboM-AG3 RepID=C8XUB6_9CAUD Length = 637 Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 126/531 (23%), Positives = 213/531 (40%), Gaps = 81/531 (15%) Query: 42 EVVDNAIDEALAGHCK---EIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVL 98 E++ N +D + K EI VT+ N + D GIP H E++ L Sbjct: 66 EIITNCVDHSKTPEGKSLTEITVTVSPMNGQIIVADNGGIPVVKHGVTNEWLPEMLFGSL 125 Query: 99 HAGGKFDD-----NSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAP 153 +AG F+D N+ K SGG +G G S+VN S+ + K + Q++E + + Sbjct: 126 YAGSNFNDEDEEYNNQK-SGGQNGEGASLVNVFSKWFRVATSDGKKSYAQLFEDNMSKKS 184 Query: 154 LAVTGETEKT-GTMVRFWPSLETF--TNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRD 210 V T K GT + + P + + ++ +R E++ N + + L K+ Sbjct: 185 NPVISNTPKEFGTTIAWIPDYARLGVKGLDQNNLLMIYRRAFEVAACNPRLKVVLNGKQI 244 Query: 211 GKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCF- 269 + D F + FV+Y + G V+ + +W+ + F Sbjct: 245 -RIDRFGH------FVDYFHA-----------------GSAVDESGEWSVAVAPSSGTFM 280 Query: 270 ----TNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSV 325 N+I GG H+ + + + KK K + + ++ Sbjct: 281 HASYVNSIATHIGGPHVDYVADQIVAAIRPQL-----VKKFKTELKPAVIKNHMSLFIAA 335 Query: 326 KVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAA 385 + +P+F SQTK+++ + +++ Y P+D K+I A A Sbjct: 336 DINNPRFDSQTKERMTTP---------VSQFGTSY---KPSD------KLIRKALEFVMA 377 Query: 386 RRAREMTRRKGALDLAGLPGKLADCQERD--------PALS-------ELYLVEGDSAGG 430 ++E+ + D A D +RD PA + L L EGDSA Sbjct: 378 GLSKELASLRNEQDDAEFEKAKKDISKRDYREIEKYYPATARGDRSGCSLLLTEGDSASN 437 Query: 431 SAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRY 490 R+ K + PL+GK +N A K+++++E L T G + D RY Sbjct: 438 PILNARDTKKIGLFPLRGKFINCLNAPRTKVMNNEEFKNLCTIHGGAVPGQPL--DISRY 495 Query: 491 HSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGK 541 ++ TDAD DG HIR LL+T + PE V +G + + + P +V GK Sbjct: 496 PQTVVATDADDDGIHIRGLLITLYCTYWPEYVRQGRLKLLRTPYMRVWCGK 546 >UniRef50_C8NCI6 DNA gyrase subunit B n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NCI6_9GAMM Length = 95 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 52/85 (61%), Positives = 67/85 (78%), Gaps = 1/85 (1%) Query: 720 EQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTT 779 +++L L+ E ++ IQRYK LGEMN E+LWETT+DP RRML+V +KDA AD++FTT Sbjct: 12 QRSLLALLAEGKKTYDIQRYKDLGEMNSEKLWETTLDPAVRRMLQVQLKDARLADEIFTT 71 Query: 780 LMGDAVEPRRAFIEENALKAANIDI 804 LMG+ VEP RAFIE+NA +ANIDI Sbjct: 72 LMGEEVEPHRAFIEDNA-NSANIDI 95 >UniRef50_Q2SFQ7 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SFQ7_HAHCH Length = 325 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 93/346 (26%), Positives = 158/346 (45%), Gaps = 35/346 (10%) Query: 17 DAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGR 76 DAVRKRPGMY GD D ++H+++E+V N +D LAG + V + ++ + V DDG Sbjct: 6 DAVRKRPGMYFGDIDH-NAVNHVIYELVANVVDLFLAGRATTLKVDV-SECEIIVIDDGP 63 Query: 77 GIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNS--YKVSGGLHGVGVSVVNALSQKLELVI 134 G P + + + E +T H DD++ V GG G+G++ VNA+S+KL + Sbjct: 64 GFPFPVE-DSAHNLVERYLTHHHDKPTADDHAPHIHVLGG--GLGLAAVNAVSEKLTIES 120 Query: 135 QREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLREL 194 RQ++ G APL +G+ ++F F N ++ L K + EL Sbjct: 121 SNGAWRWRQVFGKGDVLAPLESFRYDGPSGSSIKFTLDPSVFHNRLP-DFFQLRKAMFEL 179 Query: 195 SFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEV 254 + L SG+ + DG E + +G ++ + K +P +F F + + +G EV Sbjct: 180 AHLYSGLIVEF----DG-ERYVSKQGLMELAYLMWSGPKWAFNPKMFRFKGQTEDVGFEV 234 Query: 255 ALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDD 314 A + G + N + G H+ G R A+ G++ Sbjct: 235 AAIGDGGSPPCYKSWVNGCETEEHGAHVNGLRQALNYA--------GWAPD--------- 277 Query: 315 AREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEY 360 IA++S+ + DPKF+ K + + VKS + + + + L + Sbjct: 278 -----IALISIVMHDPKFAGPVKSRFCNRRVKSLIAEALADPLKMF 318 >UniRef50_Q9F8M6 DNA gyrase subunit B (Fragment) n=1 Tax=Carboxydothermus hydrogenoformans RepID=Q9F8M6_CARHY Length = 123 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 54/109 (49%), Positives = 72/109 (66%), Gaps = 1/109 (0%) Query: 205 LRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQE 264 L+D+R KE+ F + GGIK +++YLNKNK P+H I YF EKD + VEVALQ+ + F E Sbjct: 14 LKDERINKEEIFEHSGGIKDYLKYLNKNKEPLH-KIIYFEKEKDEVVVEVALQYCNSFSE 72 Query: 265 NIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 313 NI FTNNI +GGTH GF+ A+TR +N Y K K+ +S G+ Sbjct: 73 NILSFTNNINTTEGGTHEIGFKTALTRVINDYAKKYNLIKENNLSLQGE 121 >UniRef50_UPI0001924D0A PREDICTED: similar to DNA topoisomerase 2 n=1 Tax=Hydra magnipapillata RepID=UPI0001924D0A Length = 1315 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 130/563 (23%), Positives = 228/563 (40%), Gaps = 85/563 (15%) Query: 16 LDAVRKRPGMYIGDTDDG----------TGLHHMVFEVVDNAIDEALAGH-CKEIIVTIH 64 +D VR M+I D D+ G E++ NA D + CK I +TI Sbjct: 70 VDEVR----MFIFDEDNNKIIEDVINYVAGFFKTFDEILVNARDHTVRDKTCKNIQITID 125 Query: 65 ADNS-VSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDD----------------N 107 D ++V +DG GIP IH + + E+I L + N Sbjct: 126 RDTGRITVWNDGNGIPVSIHKKYNIYVPEMIFGNLLTSQNYGKKGKTVGGKNGYGAKLCN 185 Query: 108 SYKVSGGLHGVGVSVVNALSQKL-----ELVIQREGKIHRQIYEHGVPQAPLAVTGETEK 162 Y +H +GV + + K+ ++ +Y+ G P ++ ++ K Sbjct: 186 IYSKEFEIHTIGVDKIKEVDGKIVPDENAKKVEYRQTFKNNMYDVGKPDINKKIS-QSSK 244 Query: 163 TGTMVRFWPSLETFT---NVTEFEYEILAKRLRELSFLN--------SGVSIRLRDKRDG 211 T + + P E + +T Y +L KR +++ +G +I+ R Sbjct: 245 QFTQISYIPDYEKYGMNGRLTNDMYSLLVKRCYDIAACTPSTVNISVNGCNIKCR----- 299 Query: 212 KEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTN 271 +E I+ + K K P I Y EK E+ + +N + F N Sbjct: 300 -----KFEDYIRLYYSDDPKEK----PKITY---EKVNDRWEIGIGFNKNVGDRYISFVN 347 Query: 272 NIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPK 331 I GGTH++ + + A++ K+ K K+ ++ L ++ V DP Sbjct: 348 GISTFQGGTHVSHVVNNVVAKVTAFIKKKKEHKDLKIIPAT--IKQYLTFFINCVVEDPG 405 Query: 332 FSSQTK--------DKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARARE 383 F+SQTK D + V+ ++++ E L N ++ ++++ ++ +E Sbjct: 406 FNSQTKEYMNSKVADWCTCGNMCKDVKCELSDEFIEKLCGNG-----LMTEVVNMSKFKE 460 Query: 384 AARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQ-- 441 + ++ G L + L L + A + ++ EGDSA G + Q Sbjct: 461 MRDLDKTDGKKVGKLKIPKLKDALW-AGGKKSAKTSIFFTEGDSAQSFVIDGISVIGQER 519 Query: 442 -AILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDAD 500 + PL+GK+LNV A ++ S+ E + LG G + KLRY S+II+TD D Sbjct: 520 YGVFPLRGKLLNVRNATAKQIKSNTEFLNIKKILGLKQGVKYKDVSKLRYGSVIIITDQD 579 Query: 501 VDGSHIRTLLLTFFYRQMPEIVE 523 DGSHI+ L++ PE+++ Sbjct: 580 PDGSHIKGLIINMLEYFWPELLQ 602 >UniRef50_A5M9T1 DNA gyrase subunit B n=2 Tax=Streptococcus pneumoniae RepID=A5M9T1_STRPN Length = 128 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 50/87 (57%), Positives = 64/87 (73%), Gaps = 1/87 (1%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 + YD+S I+VL+GL+AVR RPGMYIG T GLHH+V+E+VDN+IDEALAG I V Sbjct: 10 AQDYDASQIQVLEGLEAVRMRPGMYIGSTSK-EGLHHLVWEIVDNSIDEALAGFASHIQV 68 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGV 88 I D+S++V DDGRGIP I ++ V Sbjct: 69 FIEPDDSITVVDDGRGIPVDIQEKQAV 95 >UniRef50_A0MYL3 DNA gyrase B (Fragment) n=14 Tax=Streptomyces RepID=A0MYL3_9ACTO Length = 138 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 56/137 (40%), Positives = 80/137 (58%), Gaps = 22/137 (16%) Query: 115 LHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLE 174 LHGVGVSVVNALS ++ + ++ +G Q Y+ GVP APLA T++TGT V FW Sbjct: 1 LHGVGVSVVNALSTRVAVEVKTDGHRWTQDYKFGVPTAPLARNEATDETGTSVTFWADGG 60 Query: 175 TFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDG---------------------KE 213 F TE+ +E L++R +E++FLN G++I+L D+R+ + Sbjct: 61 IF-ETTEYSFETLSRRFQEMAFLNKGLTIKLTDERESAKATAGADVAEVAEIAEAEQVRT 119 Query: 214 DHFHYEGGIKAFVEYLN 230 +HYEGGI FV+YLN Sbjct: 120 VSYHYEGGIVDFVKYLN 136 >UniRef50_D2XAH7 DNA topoisomerase II n=1 Tax=Marseillevirus RepID=D2XAH7_9VIRU Length = 1089 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 130/566 (22%), Positives = 237/566 (41%), Gaps = 73/566 (12%) Query: 25 MYIGDTDDGTGLHHMVFEVVDNAIDEALAGHC-----KEIIVTIHADNS-VSVQDDGRGI 78 M G + GL + +E+V NA+D K + V++ + +V +DG I Sbjct: 41 MLFGTLEFPEGLERIFYEIVSNAVDNFFRSSVSGIPMKSVKVSLDRETGYCTVWNDGAHI 100 Query: 79 PT-----------GIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALS 127 G + AE+ A ++D+ + + G +G+G + + S Sbjct: 101 SVEKKEYSYTDELGNTSSSLLYPAELFFGYSKASTNYNDDEVRKTSGRNGLGAKLTSIFS 160 Query: 128 QKLELVI---QREGKIHRQIYEHGVPQAPLAVTGETEKTG-TMVRFWPSLETF--TNVTE 181 + + +++ ++ +++ + P + T+K G T VRF P F TE Sbjct: 161 KHFVVRCFDPEKQRIFQQEFFDNLTRRTPPVIEKCTKKKGWTEVRFLPDFARFGLDGWTE 220 Query: 182 FEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIF 241 K LR+ S L +G+S E+ F ++ + +V + + +PN Sbjct: 221 PLLSRFQKTLRDAS-LVTGLSASFN------EEKFSFQT-LPEYVALFSGS----NPNFL 268 Query: 242 YFSTEKDGIGV---EVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFR-AAMTRTLNAYM 297 S+ + L + QE F N + + G H+ ++ A + L A+ Sbjct: 269 CLSSPDSRFALLEKNPELVPTEPSQETSLSFVNGL-EVFTGVHVNAWKNAVLMPLLKAFN 327 Query: 298 DKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSA--VEQQMNE 355 K+ K K S + L V + P+F+SQTK +L S K+ +Q+ + Sbjct: 328 AKQKAEGKPKASMKQLECFFHLFVVCDLD--KPEFTSQTKHELASPTPKTTKVSPEQIKK 385 Query: 356 LLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDP 415 L+ ++ + +D + ++ + ++T+ A LAG + A+C Sbjct: 386 LMKWGFVQE-------LSSRLDPKKTKKTKKLVLDLTKVDDA-QLAGT-SRSAECI---- 432 Query: 416 ALSELYLVEGDSAGGSAKQG----RNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLI 471 L L EGDSA A G ++R+ LKGK+LN A + ++E+ L Sbjct: 433 ----LILTEGDSAKTLAVSGFTSLKDRERYGAFALKGKVLNTTNATQKTIGKNKELELLK 488 Query: 472 TALGCG--IGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 LG +G+ LRY +++M DAD DG HI L+L F ++ PE++E+G V Sbjct: 489 NVLGLSKDLGKT------LRYGKVLLMCDADEDGKHIEGLVLNFLHKHYPELLEKGFVQS 542 Query: 530 AQPPLYKVKKGKQEQYIKDDEAMDQY 555 + P+ K GK+E++ +++ Sbjct: 543 LRTPILKAFLGKREEWFFSTTKFEEW 568 >UniRef50_Q6E0M3 GyrB (Fragment) n=1 Tax=Bacillus thuringiensis RepID=Q6E0M3_BACTU Length = 116 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 47/103 (45%), Positives = 67/103 (65%) Query: 111 VSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFW 170 VSGGLHG G + +Q + + REGKIH Q YE G+P A L V G+T++TGT+ RF Sbjct: 1 VSGGLHGCGARLXCLXAQXSXVFVHREGKIHYQKYERGIPVADLKVIGDTDQTGTITRFK 60 Query: 171 PSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE 213 P E F T ++++ LA R+REL+FLN + + + DKR+ K+ Sbjct: 61 PDPEIFQETTVYDFDTLATRMRELAFLNRNIKLTIEDKREHKQ 103 >UniRef50_D0NA12 DNA topoisomerase 2 n=1 Tax=Phytophthora infestans T30-4 RepID=D0NA12_PHYIN Length = 1505 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 131/579 (22%), Positives = 222/579 (38%), Gaps = 149/579 (25%) Query: 35 GLHHMVFEVVDNAIDEALAGHCKEII-VTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAE 92 GL+ + E++ NA D + VTI + N +SV ++G+GIP +H E V E Sbjct: 149 GLYKIFDEIIVNACDNKQRDKSMNTLKVTIDVEKNEISVWNNGKGIPIVLHKEHKVYVPE 208 Query: 93 VIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKL--ELVIQREGKIHRQIYEHGVP 150 +I L G FDD K +GG +G G + N S + E + ++Q++E + Sbjct: 209 LIFGHLLTGSNFDDKKKKTTGGRNGYGAKLANIFSNEFVVETADSSTKQKYKQVFESNMS 268 Query: 151 QA-PLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKR 209 + P ++T +K T + F P LE F +L FLN + + L KR Sbjct: 269 KKNPPSITKWAQKDFTCISFKPDLERF----------------KLDFLNDDI-VSLFKKR 311 Query: 210 -------DGKEDHFHYEGG---IKAFVEYLNKNKTP-------------IHPN------- 239 GK + G IK+F +Y+ P HP+ Sbjct: 312 VYDVAGVSGKGMNVFLNGDKIPIKSFPQYVALYPGPRGYEADKDKDDEDAHPDENGDDDD 371 Query: 240 --------------------------IFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNI 273 IF E+ +GV ++ DGFQ+++ + I Sbjct: 372 EDYSEDKAKKAKAARAKPSNVTKNGVIFEKPDERWQVGVGMS---EDGFQQHVSYIVDQI 428 Query: 274 PQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFS 333 T L + + K+ + K + + + VS + +P F Sbjct: 429 ----------------TAKLVSVLKKKNKGEAVKPNYI----KNHMFVYVSALIDNPAFD 468 Query: 334 SQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTR 393 SQTK+ L + + N + + L + ++ +++ + A ++ E+ R Sbjct: 469 SQTKETLTT---------RANSFGSTFNLSDKFLKQLEKSGLVEKILSFAAFKQTAELRR 519 Query: 394 RKGALD----LAGLPGKLADCQERDPALSE---LYLVEGDSAGGSAKQGRNRKNQAILPL 446 + G+ L G+P KL D A S+ L L EGDSA Sbjct: 520 KGGSSGKRSRLTGIP-KLDDANHAGTAKSKDCTLILTEGDSA------------------ 560 Query: 447 KGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHI 506 +L ++E+ ++ LG G+ + LRY ++IM D D DGSHI Sbjct: 561 ------------KTILKNEEIQNVVKILGLKYGQKYESTKGLRYGHLMIMADQDHDGSHI 608 Query: 507 RTLLLTFFYRQMPE-IVERGHVYIAQPPLYKVKKGKQEQ 544 + L++ + P +V G + P+ K KG+ ++ Sbjct: 609 KGLVINLIHHFWPSLLVVDGFLQEFITPIVKCTKGRTKE 647 >UniRef50_UPI0000D546F8 DNA gyrase, B subunit n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D546F8 Length = 204 Score = 95.9 bits (237), Expect = 6e-18, Method: Composition-based stats. Identities = 42/79 (53%), Positives = 61/79 (77%) Query: 726 LVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAV 785 L + S++G SI RYKGLGEMNPEQLWETT+D +R++L+V ++D + A++ LMGD V Sbjct: 126 LFEMSKKGQSISRYKGLGEMNPEQLWETTLDRANRKLLQVKLEDQVNAERQLIMLMGDDV 185 Query: 786 EPRRAFIEENALKAANIDI 804 R+ FI++N++K AN+DI Sbjct: 186 TDRKNFIQDNSIKVANLDI 204 >UniRef50_UPI00016B21F7 DNA gyrase subunit B n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B21F7 Length = 114 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 45/84 (53%), Positives = 60/84 (71%), Gaps = 1/84 (1%) Query: 4 SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTI 63 SYD S I+VL+GL+ VRKRPGMYIG T G+HH++ E+ DN+IDEA+AG+ ++ VT+ Sbjct: 32 SYDGSQIQVLEGLEPVRKRPGMYIGSTGY-DGVHHLIKEIADNSIDEAIAGYATKVEVTL 90 Query: 64 HADNSVSVQDDGRGIPTGIHPEEG 87 D + DDGRGIP HP+ G Sbjct: 91 LEDGGARISDDGRGIPVDKHPKTG 114 >UniRef50_B9U3G6 DNA topoisomerase 2 (Fragment) n=1 Tax=Pleurotus djamor RepID=B9U3G6_PLEDJ Length = 735 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 119/456 (26%), Positives = 193/456 (42%), Gaps = 62/456 (13%) Query: 116 HGVGVSVVNALSQKLELVIQREGKIHRQIYEHG-------VPQAPLAVTGETEKTGTMVR 168 +G G + N S E I+ K + + Y V +A + G E+ T V Sbjct: 2 NGFGAKLANIYSH--EFTIETADKTNEKKYSQTWTKNMTQVGKAKITKNGRGEE-WTKVT 58 Query: 169 FWPSLETF--TNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFV 226 F P L F T++ +L KR+ +++ V + L D+R ++ K +V Sbjct: 59 FKPDLARFGMTHIDPDTAGLLRKRVYDMAGTVKDVKVYLNDERLKVKN-------FKQYV 111 Query: 227 E-YLNKNKTPIHPNIFYFSTEKDGIGVE-VALQWNDGFQEN-----IYCFTNNIPQRDGG 279 E YL+ N + K I E ++ +W GF + F N+I GG Sbjct: 112 EMYLDSAAADAKENSGGAAQAKASIIYEQISPRWEVGFATSDGTFQQVSFANSISTIKGG 171 Query: 280 THLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDK 339 TH+ + + L A + K+ +K A V + + V+ + +P F SQTK+ Sbjct: 172 THVNYISDQLAKNLIAAITKK--NKGAAVKPA--QIKNHMWIFVNALIENPTFDSQTKET 227 Query: 340 LVSSEVK-----SAVEQQMNELLAEYLLENPTDAKIVVGK--IIDAA------------R 380 L K + E+ M + +L + +++V K IID + Sbjct: 228 LTLPASKFGSRPTLSEEFMKKGCVPIVLVVLSSYRLLVQKSSIIDQVLNWAKFKADQQIK 287 Query: 381 AREAARRAREMTRRKGALDLAGL----PGKLADCQERDPALSE---LYLVEGDSAGGSAK 433 + ++R R L + KL+D +E L L EGDSA A Sbjct: 288 KTDGSKRTRYFHSHSTEFVLNSIIVTGMAKLSDANNAGTKHAEKCTLILTEGDSAKSLAV 347 Query: 434 QGR---NRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRY 490 G R N + PL+GK+LNV +AR D+++ ++E+ + +G ++ N LRY Sbjct: 348 AGLAVVGRDNFGVFPLRGKLLNVREARHDQVMKNEEIQNIKKIMGLQHNKEYSNVSSLRY 407 Query: 491 HSIIIMTDADVDGSHIRTLLLTF---FYRQMPEIVE 523 ++IMTD D DGSHI+ LL+ F FY + +I E Sbjct: 408 GRLMIMTDQDHDGSHIKGLLINFLDHFYPSLLKIPE 443 >UniRef50_C9S837 DNA topoisomerase 2 n=2 Tax=Sordariomycetes RepID=C9S837_VERA1 Length = 1688 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 82/295 (27%), Positives = 137/295 (46%), Gaps = 19/295 (6%) Query: 253 EVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATG 312 +V +DG ++I F NNI GGTH+ + + L Y+DK KK + Sbjct: 347 DVGFTVSDGSFQHI-SFVNNIATTSGGTHVNYVADQIVQYLTKYLDK----KKKGHALKP 401 Query: 313 DDAREGLIAVVSVKVPDPKFSSQTKDKLVS--SEVKSAVEQQMNELLAEYLLENPTDAKI 370 R + ++ ++ +P F+SQTK+++ + S S +L+E L+ A Sbjct: 402 QHIRNHIFVFINCRIENPSFNSQTKEQMTTKISSFGSKC------VLSEAFLKK-VAASD 454 Query: 371 VVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGG 430 + I+ A + A+ R+ ++ A L +R + L L EGDSA Sbjct: 455 AIQNIMSFAEKKADKMMAKSDGNRRSRINNAKLVDANLAGTKRGHECT-LILTEGDSAKS 513 Query: 431 SAKQGR---NRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDK 487 A GR + + PL+GK+LNV A +++ +QE+ + LG ++ + Sbjct: 514 LAVAGRAILDPDRIGVFPLRGKMLNVRDASIEQITKNQEIQNIKQFLGLKHKQNYTDTKG 573 Query: 488 LRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIA-QPPLYKVKKGK 541 LRY ++IM D D DGSHI+ LL+ F Q P +++ + P+ KV +GK Sbjct: 574 LRYGHLMIMADQDHDGSHIKGLLINFLQVQYPSLLQIPDFFREFITPIVKVWQGK 628 >UniRef50_A0BK44 Chromosome undetermined scaffold_111, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0BK44_PARTE Length = 1196 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 65/227 (28%), Positives = 117/227 (51%), Gaps = 13/227 (5%) Query: 323 VSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAR 382 ++ ++ +P F SQTK+ L + K +++E + +++ ++ +I A++R Sbjct: 27 LNCQIVNPAFDSQTKETLTTKAQKFGSTFEVSEKFLDEIIKKTE----IIDNVILQAKSR 82 Query: 383 EAARRAREMTRRKGALDLAGLPGKLADCQE---RDPALSELYLVEGDSAGGSAKQG---R 436 + +++++ +K L G+ KL D + ++ L L L EGDSA A G Sbjct: 83 LNKQLSKQLSAKKQQR-LLGI-DKLEDANDAGTKNADLCTLILTEGDSAKSLAMAGIEIV 140 Query: 437 NRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIM 496 R + PL+GK+LNV A ++ + E+ L+ +G ++ N LRY SI+IM Sbjct: 141 GRDRFGVFPLRGKLLNVRDASIQMIMKNAEIEQLVKIMGLQFNKNYENTKSLRYGSIMIM 200 Query: 497 TDADVDGSHIRTLLLTFFYRQMPEIVE-RGHVYIAQPPLYKVKKGKQ 542 TD D DG HI+ L++ F + P + + +G + P+ KV KGK+ Sbjct: 201 TDQDHDGHHIKGLIINFIEKFWPSLFKMKGFLKQFVTPIIKVTKGKE 247 >UniRef50_C1ZHM4 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZHM4_PLALI Length = 325 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 88/353 (24%), Positives = 151/353 (42%), Gaps = 41/353 (11%) Query: 16 LDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSV-SVQDD 74 L+A+RKRP MY+G TD GLHH+ E++DNAID+ LA + V +H + DD Sbjct: 6 LEAIRKRPAMYVGSTD-VNGLHHLFNELLDNAIDQYLAN--QATYVEVHTSGEILEFTDD 62 Query: 75 GRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDN---SYKVSGGLHGVGVSVVNALSQKLE 131 G G+P S A+ +T + DN +SG G G+ ++ AL++ E Sbjct: 63 GPGLPFEKPGPHSGSLADYYLTHIRLDTPTADNHTPHIHLSGW--GCGLRIITALTETCE 120 Query: 132 LVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILAKRL 191 + R +Q + G+ P + G T + GT R + F+ ++ + +RL Sbjct: 121 VTSSRNHLAWKQSFSRGISNGPPHIVGHTSERGTTFRLSIDRDLFSG--DWCQHRMNQRL 178 Query: 192 RELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPN-IFYFSTEKDGI 250 E + L G+ ++ + HF G+ + K +P+ I++F+ + Sbjct: 179 IEAAHLFPGLLVK------SQGLHFKTLRGLADLAANVAHEKNSPNPDRIWWFNAVFEDF 232 Query: 251 GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSA 310 ++ A+ D E F N + GTHL A+ R + A + Sbjct: 233 HLQAAIAGTDSETE-WKSFANGNLTIENGTHL----TALQRVIEACNLRPA--------- 278 Query: 311 TGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLE 363 A + V + +P+FS T+ KL E+ S + + + L ++ E Sbjct: 279 ---------AAFIHVIISNPRFSGPTRSKLDVPEIISPIYEALYPSLKSFITE 322 >UniRef50_Q4RIW2 DNA topoisomerase 2 (Fragment) n=1 Tax=Tetraodon nigroviridis RepID=Q4RIW2_TETNG Length = 1568 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 119/504 (23%), Positives = 213/504 (42%), Gaps = 58/504 (11%) Query: 35 GLHHMVFEVVDNAID-EALAGHCKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAE 92 GL+ + E++ NA D + + I +TI + N++S+ ++G+GIP H +E + Sbjct: 91 GLYKIFDEILVNAADNKQRDKNMTAIKITIDPESNTISIWNNGKGIPVVEHKDEKMYVPA 150 Query: 93 VIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQA 152 +I L +DD+ KV+GG +G G + N S K ++ K +R ++ Q Sbjct: 151 LIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTK--FTVETACKEYRHSFKQTW-QN 207 Query: 153 PLAVTGETE------KTGTMVRFWPSLETFT--NVTEFEYEILAKRLRELSFLNSGVSIR 204 + T E + T V F P L F + + +L +R +++ GV + Sbjct: 208 NMTKTSEPKVKLFDGDDFTCVTFQPDLSKFKMEKLDKDTMALLTRRAYDVAGSCRGVKVT 267 Query: 205 LRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWND-GFQ 263 L +GK+ + G +++V+ K+K E EV L ++ GFQ Sbjct: 268 L----NGKKLPVN---GFRSYVDLYVKDKLDETGVALKVVNETVNERWEVCLTLSEKGFQ 320 Query: 264 ENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVV 323 + F N+I GG H+ + L + K+ KA V+ + + V Sbjct: 321 Q--ISFVNSIATTKGGRHIDYVVDQIVAKLIEVVKKKN---KAGVTVKPFQVKNHIWVFV 375 Query: 324 SVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENP------------------ 365 + + +P F SQTK+ + + +++ + P Sbjct: 376 NALIENPSFDSQTKENMTLQTKSFGSKCPLSDKFIRAVRTPPGRPSSCTRAVKSRCLCHL 435 Query: 366 --TDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQE---RDPALSEL 420 T+ IV I++ + + + ++ + K + + G+P KL D + + + L Sbjct: 436 QATNCGIVES-ILNWVKFKAQTQLNKKCSSVKHS-KIKGIP-KLDDANDAGGKHSSECTL 492 Query: 421 YLVEGDSAGGSAKQGR---NRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCG 477 L EGDSA A G R + PL+GKILNV +A +++ + E+ +I +G Sbjct: 493 ILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREATHKQIMENAEINNIIKIVGLQ 552 Query: 478 IGR---DEYNPDKLRYHSIIIMTD 498 + D + LRY I+IMTD Sbjct: 553 YKKSYDDAESLRSLRYGKIMIMTD 576 >UniRef50_C6LX36 DNA topoisomerase 2 n=3 Tax=Giardia intestinalis RepID=C6LX36_GIALA Length = 1492 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 87/283 (30%), Positives = 133/283 (46%), Gaps = 29/283 (10%) Query: 253 EVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSA-- 310 ++ L + D + F N+I DGGTH+ + LN + K + + AK + Sbjct: 338 DIGLGYTDSGELVQVSFVNSINTTDGGTHVDAILDLIMSQLNDILIK-SFQQDAKNAKKL 396 Query: 311 TGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKI 370 T + L+ + V +P F SQTK L + K+A+ + + AE L N A Sbjct: 397 TRQQLKSCLVLFIRSLVVNPSFDSQTKISLKTD--KAALLRSLGSTQAE--LTNL--ATQ 450 Query: 371 VVGKIIDAARAREAARRA------REMTRRKGA--LDLAGLPGKLADC---QERDPALSE 419 +V +I D A R+A + +T+ G+ L G+P KL D R+ + Sbjct: 451 LVKRIQDVRPLWNALRQASYNQAAKLLTKTDGSKTSQLLGIP-KLDDAIAAGTRESSKCT 509 Query: 420 LYLVEGDSAGGSAKQGRN-----RKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAL 474 L L EGDSA A G + +K + PL+GK++NV DK+ ++ E+ L L Sbjct: 510 LILTEGDSAKALAVDGISSIEDGKKYYGVFPLRGKVINVRNESIDKVSNNAEITNLKKIL 569 Query: 475 GCGIGRD---EYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFF 514 G G D + + LRY ++IMTD D DGSHI+ LL+ F Sbjct: 570 GLKQGMDYSTQEARNTLRYGHVMIMTDQDPDGSHIKGLLINLF 612 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/197 (22%), Positives = 81/197 (41%), Gaps = 40/197 (20%) Query: 8 SSIKVLKGLDAVRKRPGMYIG------------DTDDG---------TGLHHMVFEVVDN 46 + I+ + G + V RP MY+G + D G GL + E++ N Sbjct: 5 TKIQRVTGSEHVLLRPDMYVGSVSSAETFLWLYNPDQGLYYTKANIVPGLCKIFDEIIVN 64 Query: 47 AID------EALAGH------CKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVI 94 A D + AGH C +V+ ++SV++DG +E + + Sbjct: 65 ASDNKQRDSDRSAGHKMSYIKCDVDVVS----GAISVENDGVEGLLHFDEKEKMYLPTLA 120 Query: 95 MTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGV--PQA 152 +L +DD +V+GG +G G + N S K +++Q G++ Q + + Q+ Sbjct: 121 FGILMTSSNYDDTEQRVTGGRNGYGAKLTNIFSTKFTVLLQENGRVFEQTWTDNMKNTQS 180 Query: 153 PLAVTGETEKTGTMVRF 169 P + +K +RF Sbjct: 181 P-RIEDVKDKKKNFIRF 196 >UniRef50_A9ZPQ0 DNA gyrase subunit B (Fragment) n=5 Tax=Corynebacterium RepID=A9ZPQ0_9CORY Length = 183 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 60/185 (32%), Positives = 86/185 (46%), Gaps = 53/185 (28%) Query: 126 LSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYE 185 LS ++E I+REGK Q +++ VP L G TGT +RFW E F TEF+Y+ Sbjct: 1 LSTRVEAEIKREGKHWYQNFQNAVPD-DLVEGGNARGTGTKIRFWADPEIF-ETTEFDYD 58 Query: 186 ILAKRLRELSFLNSGVSIRLRDKR-------------------DGKEDHF---------- 216 +A+RL+E++FLN G++I L D+R G E F Sbjct: 59 TIARRLQEMAFLNKGLTIELIDERVTQAQIELEEIAEAESGEARGDETSFDDIPDAGDTF 118 Query: 217 ----------------------HYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEV 254 HY G+ +V++LNK+K+ IHP I F + + VEV Sbjct: 119 NEEDDSTNVITADKKRRKKVTFHYPDGLTDYVKFLNKSKSTIHPTIVSFEAKGEEHEVEV 178 Query: 255 ALQWN 259 ALQW+ Sbjct: 179 ALQWS 183 >UniRef50_A7C3L4 Topoisomerase B subunit n=1 Tax=Beggiatoa sp. PS RepID=A7C3L4_9GAMM Length = 337 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 93/347 (26%), Positives = 156/347 (44%), Gaps = 33/347 (9%) Query: 18 AVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRG 77 AVRKRPGMY GD + G G + +V+E+V NA+D LAG K+I + + +N++ + DDG G Sbjct: 16 AVRKRPGMYFGDIESG-GANTVVYEIVANAVDIFLAGLAKKINIEV-NNNNIIISDDGPG 73 Query: 78 IP-TGIHPEE-GVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQ 135 P P++ ++ E +T H D+++ + G+G++V+NA S+KL + Sbjct: 74 FPFFKASPQDTSINLVEYYLTNFHNSPTADNHAPHIHILGRGLGLAVLNAASKKLAIESS 133 Query: 136 REGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELS 195 K+ Q + G+ +P TG+ V F N +E L K E+ Sbjct: 134 DGEKLWTQNFGEGMVLSPATHESGNFPTGSKVSITLDPMVFDNHGPNSFE-LRKIFFEVV 192 Query: 196 FLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPI-HPNIFYFSTEKDGIGVEV 254 L G+SI KE + G + L K+ + + P +F F +K GI +V Sbjct: 193 HLYPGLSIEFE-----KECFYSNNGLVDLGYILLKKSASYMGMPKMFRFHYQKKGIEFQV 247 Query: 255 ALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDD 314 A + + N + G+H G +A+ LN + + Sbjct: 248 AALGDSKEGTEFRSWVNGCASVENGSHAKGLSSAL--RLNKWKPE--------------- 290 Query: 315 AREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYL 361 IA++ V + DPKF+ +D L EV +E+++ + +L Sbjct: 291 -----IALIHVIMHDPKFAGPCRDALQMPEVLKVIEEKLTPEIKAFL 332 >UniRef50_D2TEU4 Putative DNA topoisomerase n=2 Tax=dsDNA viruses, no RNA stage RepID=D2TEU4_9VIRU Length = 1103 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 136/584 (23%), Positives = 249/584 (42%), Gaps = 94/584 (16%) Query: 10 IKVLKGLDAVRKRPGMYIGDTD---------DGTGLHH---MVFEVVDNAIDEALAGH-- 55 ++VL D + RPGMY+G + TG H M+ + I+E LA Sbjct: 6 MQVLTQHDHILARPGMYVGGVEPVEYNKEVMTMTGPKHVKEMMVPALLKIIEEPLANASD 65 Query: 56 -------CKEIIVTI-HADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKF--D 105 K I VT D+S+ ++ + + + + P+ + + ++ G F D Sbjct: 66 ASQNNPVAKNIKVTTDQRDSSIKIETNTKFVIEYV-PDGNDYSVALAVSRFMTGTNFGDD 124 Query: 106 DNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPL------AVTGE 159 D S+K+ G HG+G+ + N S+ E+V+ +Q Y HG+ + V Sbjct: 125 DESFKL--GQHGLGIKLTNVFSKYFEVVVHDPST--KQSY-HGIWTNNMYTVEKSVVKKA 179 Query: 160 TEKTGTM-VRFWPSLETFT---NVTEFEYEILAKRLRELSFLNSG-VSIRLRDKRDGKED 214 + KT + + F P L F +T +++I+ ++ +L+ ++ L +G++ Sbjct: 180 SHKTPYVSITFIPDLPYFGLRGPLTAGQWDIIHSQVFDLAVTAPKHTTVHL----NGEKI 235 Query: 215 HFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDG-IGVEVALQWNDGFQENIYCFTNNI 273 F GIK +++ + + I E +G + +EVA+ E+I + N Sbjct: 236 PFK---GIKGYIQAVMGDSLD---KICMDKVEVNGTVRLEVAVTIARDHAESI-VYVNGA 288 Query: 274 PQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFS 333 G H F+ SKK ++ + R L+ V +P+ +F+ Sbjct: 289 HTTRGTIHDYIFKNI----------ANALSKKHNINPSM--LRGLLLIVAEAWIPNARFT 336 Query: 334 SQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTR 393 SQ K++L + K + +++ + L + TD + +++ ++ + ++M Sbjct: 337 SQAKEELYTPVSKYGFKWDLSQSFIKSLAK--TD---LYTSVVNLLHDKDDKKAQKDMKV 391 Query: 394 RKGALDLAGLPGKLADCQERDPAL-------SELYLVEGDSAGGSAKQGRN----RKNQA 442 K K+ + DPA +EL + EGDSA A GRN N Sbjct: 392 GKN---------KIPQFAKYDPATKLFKVNDAELLITEGDSAKQLANVGRNAVKRHANMG 442 Query: 443 ILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR--DEYNPDKLRYHSIIIMTDAD 500 + PL+GK++N + + +++E++ LI LG + D + L Y ++I TD D Sbjct: 443 LYPLRGKLMNAGNSSLKALAANKEISELIQILGITPYKKYDLASARALPYRHLVIFTDQD 502 Query: 501 VDGSHIRTLLLTFFYRQMPEIVERGHVYIAQ--PPLYKVKKGKQ 542 VDGSHI L + +P ++E YI + P+ K+ GK Sbjct: 503 VDGSHISGLCIQLIMTLVPSLLEVFPDYIKRFATPILKITSGKH 546 >UniRef50_B2G4Y3 GyrB protein (Fragment) n=1 Tax=Bacillus sp. AKG RepID=B2G4Y3_9BACI Length = 80 Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 54/77 (70%), Gaps = 1/77 (1%) Query: 198 NSGVSIRLRDKRDGKED-HFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVAL 256 N + + + DKR K+ FHYEGGIK++VE+LN++K PIH Y KDGI VEV+L Sbjct: 1 NRNIKLTIEDKRGHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSL 60 Query: 257 QWNDGFQENIYCFTNNI 273 Q+N+G+ NIY FTNNI Sbjct: 61 QYNEGYTNNIYSFTNNI 77 >UniRef50_Q196X4 DNA topoisomerase 2 n=1 Tax=Invertebrate iridescent virus 3 RepID=TOP2_IIV3 Length = 1113 Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 135/567 (23%), Positives = 220/567 (38%), Gaps = 75/567 (13%) Query: 35 GLHHMVFEVVDNAID----EALAGH--CKEIIVTIHADN-SVSVQDDGRGIPTGIHPEEG 87 L + EV+ NA+D GH CK I V + SV +DG+ IP + + G Sbjct: 56 ALVRIFVEVLTNAVDNIERSINGGHELCKNIKVDVDLKTGKTSVWNDGQVIPVVKNCDNG 115 Query: 88 VSAA-----------------EVIMTVL----HAGGKFDDNSYKVSGGLHGVGVSVVNAL 126 V E I T++ +D+ + +VSG +GVGV N Sbjct: 116 VVQPPPPTTEQDRLAYEKLNREYIHTIIFGHFRTSSNYDNETDQVSGK-NGVGVKCTNIF 174 Query: 127 SQKLELV-------IQREGKIHRQIYEHGVPQAPLAVTGETEKTG-TMVRFWPSLETFT- 177 S +V ++ + + + G PQ V KTG T+V + P F Sbjct: 175 SSWFSVVGVDPDRKLKFSQEWRSNMTKSGAPQ----VVKCALKTGYTLVEYVPDFARFKL 230 Query: 178 -NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPI 236 + E I K + + S + +R ++ Y Y N N+T + Sbjct: 231 KSYPEDVESIFKKLVVDASAFFPNTAFFFNGERTVVKNAVAYAK------LYYNLNETAV 284 Query: 237 HPNIF-YFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNA 295 + Y ++ +G L F N GG H+ + + L A Sbjct: 285 DSVVIDYKDSKVVVVGSATPLP--------PVSFVNGQITPAGGQHVTNWSRVIFGALLA 336 Query: 296 YMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNE 355 ++ K VS T D + KV PKF Q K+ L S +V++ ++ + + Sbjct: 337 ALNG-----KKNVSLTKADIAPYFQLFIHSKVSKPKFDGQNKNCLKSPKVEAHLDATILK 391 Query: 356 LLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDP 415 + ++ + + K+V K A + E R + G L C+ Sbjct: 392 KMLKWKIISTIQDKVVKSKEYLALKKIECRRTPIVKVDGYDQANRLGPDSVLIVCEGLS- 450 Query: 416 ALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALG 475 ++ Y V G G K+GR ILPL+GK LNV+ K+ ++ V+ I L Sbjct: 451 --AKSYAVAGIQKGLFNKKGRTY--FGILPLRGKFLNVKNTTPLKIGQNKVVSDFIKVLN 506 Query: 476 CGIG---RDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVER-GHVYIAQ 531 R N L Y +++I+TDAD DG HI+ L+L + P + R G +Y + Sbjct: 507 LKFNLDYRKATNYATLNYGTLLILTDADKDGIHIKGLILNLIHELFPTLFHRQGFIYSME 566 Query: 532 PPLYKV--KKGKQEQYIKDDEAMDQYQ 556 P+ K+ KKG Q D+ + + ++ Sbjct: 567 TPIVKILHKKG-QPTLFYDENSFEDWR 592 >UniRef50_UPI0001698B4D DNA gyrase subunit B n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001698B4D Length = 143 Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 39/105 (37%), Positives = 66/105 (62%) Query: 534 LYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKM 593 L+K+KKGKQEQY+KD+ ++ Y + AL+ + ++ A AP L+G ALE L Y + Sbjct: 11 LFKIKKGKQEQYLKDESDLNSYFLQTALENSAIYVTADAPPLSGSALEDLCQSYLVVKST 70 Query: 594 INRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELN 638 I+R+ RRY + +L++LIY L + + +++ + W+ L+ LN Sbjct: 71 IDRLSRRYDEELLEKLIYVRRLDASLVENQEAMDGWLADLLPMLN 115 >UniRef50_A8NKQ4 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8NKQ4_COPC7 Length = 919 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 63/196 (32%), Positives = 99/196 (50%), Gaps = 18/196 (9%) Query: 371 VVGKIIDAAR--AREAARRAREMTRRKGALDLAGLPGKLADCQE---RDPALSELYLVEG 425 +V +++ A+ A + +RA + T+R L LA KL+D R L L EG Sbjct: 388 IVDNVLNWAKFKADQQMKRA-DGTKRSRLLGLA----KLSDANNAGTRHAQDCTLILTEG 442 Query: 426 DSAGGSAKQGRN---RKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDE 482 DSA A G R N + PL+GK+LNV +A D+++ ++E+ + +G +D Sbjct: 443 DSAKALAIAGLGVVGRDNFGVFPLRGKLLNVREACHDQVMKNEEIQNIKKIMGLQHNKDY 502 Query: 483 YNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGH--VYIAQPPLYKVKKG 540 N LRY ++IMTD D DGSHI+ L++ F P +++ V P VKKG Sbjct: 503 TNTSSLRYGRVMIMTDQDHDGSHIKGLIINFLDHLYPSLLKIPDFLVEFVTPLSGYVKKG 562 Query: 541 KQEQYIKDDEAMDQYQ 556 + +KD + +Y+ Sbjct: 563 NK---VKDFFTIPEYE 575 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 60/236 (25%), Positives = 104/236 (44%), Gaps = 36/236 (15%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDT----------DDGT------------GLHHMVFEVV 44 S + L L+ + KRP YIG+ D T G +V E++ Sbjct: 106 SDHLMTLTQLEHILKRPDSYIGNIEIISTPMWTYDSETIRMVHREVKYVPGFFKIVDEIL 165 Query: 45 DNAIDEALAGHCKEII-VTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGG 102 NA D + + + +TI + ++SV ++GRGIP IH +E + E+I L Sbjct: 166 VNAADNKINDPSMDTLKITIDVEEGTISVYNNGRGIPIEIHSKEKMYIPEMIFGHLLTST 225 Query: 103 KFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK 162 +DD+ K++GG +G G + N S LE ++ K Q Y+ ++ G+ + Sbjct: 226 NYDDDEKKLTGGRNGYGAKLANIYS--LEFTVETADKNTSQKYKQTWTDN-MSKCGKAKI 282 Query: 163 TG-------TMVRFWPSLETF--TNVTEFEYEILAKRLRELSFLNSGVSIRLRDKR 209 T T + F P L+ F ++ E +L +R+ +++ V + L D+R Sbjct: 283 TKNTRGEEYTRITFRPDLKRFGMNSINEDTVNLLKRRVFDMADTVKDVKVLLNDER 338 >UniRef50_UPI0000382E10 COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI0000382E10 Length = 122 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 40/80 (50%), Positives = 55/80 (68%), Gaps = 1/80 (1%) Query: 5 YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIH 64 YD+S+I+VL+GL+ VR+RPGMYIG TD+ LHH+ EV+DN++DEA+AGH I + + Sbjct: 44 YDASAIEVLEGLEPVRRRPGMYIGGTDE-RALHHLFAEVIDNSMDEAVAGHASFIELELE 102 Query: 65 ADNSVSVQDDGRGIPTGIHP 84 + V D GIP HP Sbjct: 103 DTVCLVVTDIVLGIPFDPHP 122 >UniRef50_Q2B8E8 DNA gyrase, B subunit n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B8E8_9BACI Length = 350 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 98/192 (51%), Gaps = 7/192 (3%) Query: 15 GLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDD 74 L+A+R+ P T+ + ++F ++ +A+ E AG I + +H+D S +V DD Sbjct: 166 ALEALREEPEKMDMKTEGDFDANILLFSLIHHAVQEHEAGFASRINIYLHSDGSATVSDD 225 Query: 75 GRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVI 134 GRGIP + +S + ++T + D + K G+ V+ +NA S+KL ++I Sbjct: 226 GRGIPVSLLEGTSMSRLQDVLTDVEKNYLEDSLNEK-----SGIPVAAINAFSEKLTVLI 280 Query: 135 QREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLREL 194 +++ I+ Q Y++G + G+T +TGT + F P + F + F L ++ EL Sbjct: 281 KKDTMIYSQEYQYGKALTRVVPIGKTNETGTSITFLPDKKVFK--SGFNAAKLEGKINEL 338 Query: 195 SFLNSGVSIRLR 206 L+ + + L+ Sbjct: 339 QGLHPDLLVSLQ 350 >UniRef50_Q27537 Chromosome instability 4 n=3 Tax=Chromadorea RepID=Q27537_CAEEL Length = 842 Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 74/153 (48%), Gaps = 10/153 (6%) Query: 400 LAGLPGKLADCQE---RDPALSELYLVEGDSAGGSAKQGRN---RKNQAILPLKGKILNV 453 L G+P KL D + ++ L L EGDSA A G + R + P + K+LNV Sbjct: 37 LKGIP-KLEDANDAGTKNSQQCTLILTEGDSAKTLAVSGLSVVGRDKYGVFPFRRKLLNV 95 Query: 454 EKARFDKMLSSQEVATLITALGCGIGRDEYNPD---KLRYHSIIIMTDADVDGSHIRTLL 510 +++ S EV +I LG + D LRY ++IM + D DGS + LL Sbjct: 96 CDLNVNQIADSAEVNAIIKILGLQYTKKYETEDDFKTLRYGKLLIMANHDSDGSQFKGLL 155 Query: 511 LTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQE 543 L FF+R P + +R V P+ K +GK+E Sbjct: 156 LNFFHRFWPALFKRDFVEDFITPIAKATEGKEE 188 >UniRef50_Q7UUI4 DNA gyrase subunit B n=1 Tax=Rhodopirellula baltica RepID=Q7UUI4_RHOBA Length = 243 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 66/128 (51%), Gaps = 7/128 (5%) Query: 415 PALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLI-TA 473 P +EL +VEGDSA S Q R+ Q++L L+GK +NV KA L ++ + T Sbjct: 28 PDQTELVIVEGDSAAKSVNQVRDTTRQSVLALQGKPMNVAKASRSVALRNEVLIRFASTL 87 Query: 474 LGCGIGRDE------YNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHV 527 L + E D+ RY ++++ D D DG H L+L F R P++++ V Sbjct: 88 LDHKLSASEDWIEALRKADRCRYARLVVLMDPDADGIHCGVLVLGFLLRFAPQLLQERRV 147 Query: 528 YIAQPPLY 535 + +PP++ Sbjct: 148 CVVRPPMF 155 >UniRef50_Q401L8 DNA gyrase subunit B (Fragment) n=1 Tax=Mycobacterium kansasii RepID=Q401L8_MYCKA Length = 109 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 37/84 (44%), Positives = 54/84 (64%), Gaps = 2/84 (2%) Query: 126 LSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYE 185 LS +LE+ I+R+G Q+YE P L T+KTGT VRFW F TE+++E Sbjct: 1 LSTRLEVEIKRDGYEWSQVYEKSEPMG-LKQGAPTKKTGTTVRFWADPNVF-ETTEYDFE 58 Query: 186 ILAKRLRELSFLNSGVSIRLRDKR 209 +A+RL+E++FLN G++I L D+R Sbjct: 59 TVARRLQEMAFLNKGLTINLTDQR 82 >UniRef50_D0L8E8 DNA topoisomerase n=22 Tax=cellular organisms RepID=D0L8E8_GORB4 Length = 55 Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 32/50 (64%), Positives = 39/50 (78%), Gaps = 1/50 (2%) Query: 5 YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAG 54 Y + SI + +GLD VRKRPGMYIG T GLHHM++EVVDN +DEA+AG Sbjct: 7 YGAESIAIREGLDVVRKRPGMYIGSTSS-RGLHHMLWEVVDNGVDEAMAG 55 >UniRef50_B9XLD1 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit-like protein n=1 Tax=bacterium Ellin514 RepID=B9XLD1_9BACT Length = 353 Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 87/366 (23%), Positives = 150/366 (40%), Gaps = 50/366 (13%) Query: 5 YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIH 64 YDSS I + + VRKRPGMY G + + +M+ +++ +D I +TI Sbjct: 4 YDSSHIAKMTFKEGVRKRPGMYFG-LNGPAAIPYMLRYIINGVLDTTPDTFTGPIRITI- 61 Query: 65 ADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL---HGVGVS 121 NS ++ D + + P AE+ + +K+ + H S Sbjct: 62 --NSGTIITDCPSLSAPLFPP-----AEL------------EQWFKLGSDMKPYHQSYAS 102 Query: 122 VVNALSQKLELVIQREGKIHRQIYE-HGVPQAPLA--VTGETEKTGTMVRFWPSLETFTN 178 V A S L + R YE H AP+ ++ T + F P F Sbjct: 103 FVAAASDLFTL--ESCDGTQRARYEDHD--DAPITRILSPATSPPFLRITFRPFAPVFGT 158 Query: 179 VTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFV---EYLNKNKTP 235 +T E ++ LR+ S L +G++ R E H +Y+ G+ F+ +YL+ P Sbjct: 159 ITTAELCKISGMLRDFSLLQAGLATSNRADLLQHEIHHYYQDGLINFLFEADYLHHPHPP 218 Query: 236 IHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMT----- 290 HP+ F ++ + VE L++ +G+ + + N + GTHL G A++ Sbjct: 219 SHPDPLSFKATENKMTVEGHLRFTNGYTHQVRTWVNR-QSTESGTHLEGLGLALSGIFPN 277 Query: 291 -----RTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEV 345 R + + Y K KV +IA + +++P+P FS T+ L + E Sbjct: 278 PSRDFRDMAINTNFANYRNKTKVIVP-----HAMIAALHLRLPEPHFSGATRYNLSNPEA 332 Query: 346 KSAVEQ 351 + V + Sbjct: 333 RDFVHR 338 >UniRef50_D2PP74 GCN5-related N-acetyltransferase n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PP74_9ACTO Length = 337 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 80/169 (47%), Gaps = 9/169 (5%) Query: 9 SIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNS 68 S+ + ++ +R+ P G G+ H+ EV+ +DEA+ G ++ V +HAD S Sbjct: 149 SVADTEHVEQIRQDPAYRAG------GVLHLALEVIAYPLDEAVEGTTTQVRVVLHADGS 202 Query: 69 VSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQ 128 ++V D+GRG + GV + IM D +S ++ GL G+SV ALS+ Sbjct: 203 IAVSDNGRGTAVRFD-DGGVPMVKPIMATRDLRFFADPDSPRLPDGLPRAGMSVPIALSE 261 Query: 129 KLELVIQR-EGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETF 176 R EG R+ YEHG+P+ L TGT + F P F Sbjct: 262 WAVHTNHRTEGSWTRR-YEHGMPRGALTAVPADSSTGTTIHFRPDRTLF 309 >UniRef50_C5Z2Y6 Putative uncharacterized protein Sb10g016438 (Fragment) n=3 Tax=Sorghum bicolor RepID=C5Z2Y6_SORBI Length = 396 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 79/159 (49%), Gaps = 16/159 (10%) Query: 414 DPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITA 473 D L EGDSA A +R +L LKGK+LNV A K+L ++E+ + Sbjct: 112 DSQKCTLIFTEGDSAKDLALGSVHRDYFGVLALKGKLLNVRDASLKKILDNEEINNMRKI 171 Query: 474 LGCGIGRDEYNPDK----LRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVE-RGHVY 528 +G + YN +K LRY +++MTD D DG HI+ L++ F+ P +++ + + Sbjct: 172 IGLDY-KKHYNDEKDLKDLRYGKVMVMTDQDPDGFHIKGLIINLFHVFWPSLLKIKSKSF 230 Query: 529 IAQ--PPLYK------VKKGKQEQYIKDDEAMDQYQISI 559 + PL K +K+G QY KD + +Y + + Sbjct: 231 LCDLVTPLVKGLGTRTLKEGM--QYFKDIDIHQKYFVWV 267 >UniRef50_A6G3Y8 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G3Y8_9DELT Length = 272 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 71/303 (23%), Positives = 133/303 (43%), Gaps = 34/303 (11%) Query: 52 LAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKV 111 L+G C + V++ D+ V DDG G+ P E + E G D V Sbjct: 3 LSGRCSRLYVSLTHDH-FCVVDDG----PGLEPSEVLDQLETHHKKRTRQG--DRAHAHV 55 Query: 112 SGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWP 171 G G+G++++NAL+++LE ++R G++ R ++E V + + G + +GT +R WP Sbjct: 56 IGT--GMGLAMINALARRLEFELRRAGEVRRWVFEGTVLVSENELVGACDDSGTTLRVWP 113 Query: 172 SLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNK 231 E L+ L ++ +L + + L +R F E G+ A++ + Sbjct: 114 DASLMREPLPSRAE-LSAVLEKVHWLCPALRVELDGRR------FSGEAGLAAWIRRQPE 166 Query: 232 -NKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMT 290 + +P+ G V +A W D N+ + G+H Sbjct: 167 WDGSPV--ETLELVDGARGARVGLAWAWLDEPCVARQAAFVNLRETPRGSH--------- 215 Query: 291 RTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVE 350 ++A + EG + + VS AR ++A+VSV + +P++ S T++ L E+ + +E Sbjct: 216 --MDALL--EGLAARYGVSPA--MARRRVLALVSVVLEEPRYDSPTREVLAQPELGAWIE 269 Query: 351 QQM 353 + Sbjct: 270 ASL 272 >UniRef50_B4V6F8 Putative uncharacterized protein n=3 Tax=Actinomycetales RepID=B4V6F8_9ACTO Length = 234 Score = 66.6 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 53/137 (38%), Positives = 68/137 (49%), Gaps = 5/137 (3%) Query: 35 GLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVI 94 GL H+V EVV A DEA + VT+HAD SVSV DDGRG T + G + + + Sbjct: 48 GLRHLVLEVVAYAADEAESRGGGRCTVTLHADGSVSVADDGRGTDTRFD-DSGRAVRKPV 106 Query: 95 MTVLHAGGKFDDNSY--KVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQA 152 M +F D+ + G G+SVV ALS L +R G Q YE+GVP Sbjct: 107 MATKDL--RFFDHPEPPPLPDGHPRRGMSVVAALSAWLVHTNRRAGGAWTQRYEYGVPVT 164 Query: 153 PLAVTGETEKTGTMVRF 169 L + TGT+V F Sbjct: 165 GLTPVADDGTTGTLVHF 181 >UniRef50_Q5FEK8 Putative uncharacterized protein n=1 Tax=Ehrlichia ruminantium str. Welgevonden RepID=Q5FEK8_EHRRW Length = 75 Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 42/52 (80%) Query: 723 LDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAAD 774 +D +++ S++ +++QR+KGLGEMN +QLW+TT++P++R L++ + D AAD Sbjct: 24 VDNIIEFSKKDMTLQRFKGLGEMNTDQLWDTTLNPDTRTFLKIKISDCEAAD 75 >UniRef50_A0FHT1 Putative DNA gyrase subunit B (Fragment) n=2 Tax=uncultured bacterium RepID=A0FHT1_9BACT Length = 74 Score = 62.8 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 36/75 (48%), Positives = 45/75 (60%), Gaps = 1/75 (1%) Query: 132 LVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILAKRL 191 L I+R ++ +Y H PQ L V GE++ GT V F PS ET +N+ F EI AKR+ Sbjct: 1 LSIRRHKEVWELVYHHFAPQFLLRVVGESDGCGTEVYFKPSPETISNL-HFSSEIQAKRM 59 Query: 192 RELSFLNSGVSIRLR 206 REL FL SGV I R Sbjct: 60 RELWFLISGVGILQR 74 >UniRef50_C7UEA1 Predicted protein n=22 Tax=Enterococcus faecalis RepID=C7UEA1_ENTFA Length = 342 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/250 (22%), Positives = 111/250 (44%), Gaps = 16/250 (6%) Query: 120 VSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNV 179 +SV+ A S+++ + I +E + IY G + L + E + V FWP + F Sbjct: 93 LSVLQAFSKQVGISIDQEKQRTIFIYHQGQLKKRLLLPIEETQERIEVLFWPDTQIF-GT 151 Query: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFV----EYLNKNKTP 235 Y + ++ ++++ LN G+ I L + + K + +Y G+ ++ L + P Sbjct: 152 ESLSYMRVLQQCQQIAMLNPGLKILLTQEEEQK-NLCYYPKGLSNYLFEKDNPLTRKAAP 210 Query: 236 IHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNA 295 I + + + V+ L N Q F N GGTH GF + N Sbjct: 211 IIQ-----AKQTELALVQFILSKNHAPQVQ-KTFVNGHYPSLGGTHYEGFLDGVVAAFNQ 264 Query: 296 YMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNE 355 +++++ YS +S T D V+++ +P P+++ TK L ++E+ V++ + + Sbjct: 265 FLEEQHYS----LSVTADSFLAEFDFVLAITIPKPRYTDATKTILRNTELYEVVKEVVFD 320 Query: 356 LLAEYLLENP 365 L Y +P Sbjct: 321 ELQHYFQRHP 330 >UniRef50_A4YWI0 DNA gyrase subunit B GyrB n=1 Tax=Bradyrhizobium sp. ORS278 RepID=A4YWI0_BRASO Length = 118 Score = 55.5 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 7/100 (7%) Query: 119 GVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGE------TEKTGTMVRFWPS 172 G+ VVNALS+ L++ + R+GK H + G +APL +TG+ + GT + F P Sbjct: 12 GLFVVNALSEWLQVRVWRDGKEHVMRFGRGRSEAPLRITGDAGIVDGAPRRGTEITFCPD 71 Query: 173 LETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK 212 FT V F+ + + LR + GV++ L D+R + Sbjct: 72 ARVFTTVG-FDEARIEQSLRRMPVFKVGVTVTLSDQRSAE 110 >UniRef50_Q9K2S8 GyrB protein (Fragment) n=2 Tax=Mycoplasma hominis RepID=Q9K2S8_MYCHO Length = 103 Score = 52.8 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 57/104 (54%), Gaps = 4/104 (3%) Query: 129 KLELVIQREGKIHRQIYEHG-VPQAPLAVTGETEK--TGTMVRFWPSLETFTNVTEFEYE 185 + E+ ++R+GK+H Q + +G +P PL V G + TGT ++F P T F+++ Sbjct: 1 EFEVWVKRDGKLHYQQFRNGGIPVKPLEVIGNVSEVETGTTIKFHPDY-TIMEKENFDFD 59 Query: 186 ILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYL 229 + +++++LN G+ I + + F +EGG+ +V+ L Sbjct: 60 TIIDHSKQIAYLNKGLKITVENVEKNIIKVFCFEGGLIDYVKEL 103 >UniRef50_UPI0001909AAD DNA gyrase subunit B n=1 Tax=Rhizobium etli IE4771 RepID=UPI0001909AAD Length = 216 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/168 (24%), Positives = 79/168 (47%), Gaps = 6/168 (3%) Query: 577 GEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSE 636 G+ L +++ + + +++ + RY +A++++ L +SD+ V+ + S Sbjct: 15 GQDLREVILDALRMRALLDNLHSRYNRAVVEQAAIAGALNAELVSDQARAQALVSEVASR 74 Query: 637 LND-KEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGE 695 L+ E+ W+ D+ ++ L E +VR GV LD I + R I L Sbjct: 75 LDIIAEETERGWQGDLTSDGGLRL-ERMVR----GVKEIVVLDMALIGSSDARHIDQLTS 129 Query: 696 KLRGLLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLG 743 +L+ + + + R E ++ LD + R+GL++QRYKGLG Sbjct: 130 RLKEIYQTPPSLHRREGDIEISGPRALLDAIFASGRKGLTMQRYKGLG 177 >UniRef50_UPI0001B56D9F DNA gyrase subunit B n=1 Tax=Streptomyces sp. C RepID=UPI0001B56D9F Length = 82 Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 27/81 (33%), Positives = 42/81 (51%) Query: 301 GYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEY 360 G + A+ A D EGL+AVVSVK+ P+F T L ++ V+ V + E + + Sbjct: 2 GPAPAAQQGAIADGVGEGLVAVVSVKLDQPEFRGVTHGVLGNAAVRGCVADAVREEVDAW 61 Query: 361 LLENPTDAKIVVGKIIDAARA 381 +P A VV +++ ARA Sbjct: 62 FARDPDTASTVVNRVLRDARA 82 >UniRef50_A0BK45 Chromosome undetermined scaffold_111, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0BK45_PARTE Length = 221 Score = 46.2 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 27/88 (30%), Positives = 44/88 (50%) Query: 35 GLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVI 94 GL+ + E++ NA D + I ++S+ V++ G GIP IH + + E+I Sbjct: 57 GLYKIFDEILVNAADNYQRDKSTDRISVSIDNDSIMVENTGAGIPIQIHKQYNIYVPEMI 116 Query: 95 MTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 L +DD+ KV+GG +G G V Sbjct: 117 FGRLLTSSNYDDSEQKVTGGRNGFGDKV 144 >UniRef50_C7P9T7 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit-like protein n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7P9T7_CHIPD Length = 352 Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust. Identities = 81/378 (21%), Positives = 157/378 (41%), Gaps = 50/378 (13%) Query: 13 LKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQ 72 L ++++R RP MY+G + G+ ++ ++ + +++ EI T + D+ VSV Sbjct: 7 LPVIESIRNRPVMYLGSVNS-YGIRRLMKMLITDYLEDVTGLSTVEI--TFNPDSFVSVV 63 Query: 73 DDGRGIPTGIHPEEGVSAAEV-IMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLE 131 G + +H EV + + +G F ++++ A+S+ + Sbjct: 64 LSGMPVDELLH--------EVAFLQEISSGKNFK--------------IALLIAISRFVL 101 Query: 132 LVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILAKRL 191 + I G+IH G+ + + + E G V F + F + + Y + L Sbjct: 102 VRIVVNGEIHSITSHAGIYEVEMH-PADGEPNGIKVDFQLEEQIFKH-NQVAYIPMNIML 159 Query: 192 RELSFLNSGVSIRLRDKR-DGKEDHFHYEGGI-KAFVEYLNKNK-------TPIHPNIFY 242 ++L++LN G+ I D R + + + F++ GI + F + L+K+ PI Sbjct: 160 QQLAYLNPGLKIISVDNRGELQRNVFYFRTGISELFNDLLDKHDYGSMNAWLPIE----- 214 Query: 243 FSTEKDGIGVEVALQWNDGFQ----ENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 T +G V L+++ + I F NN + G+ + G + + Sbjct: 215 LKTAINGYIFHVILRYHHIYTVYPAPYIRSFANNEATKGHGSLVEGVLKGLEDAFVEVGE 274 Query: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 KEG K G + L+ +VK + ++KDKL +K V + + + Sbjct: 275 KEGVELKVNKKRIG----KMLVLFAAVKGEPLTYDGRSKDKLDMPGLKKDVRKFVKRGVL 330 Query: 359 EYLLENPTDAKIVVGKII 376 +YL N D + V+ K I Sbjct: 331 KYLESNSGDRRRVLEKFI 348 >UniRef50_Q0P7Q0 DNA gyrase subunit B (Fragment) n=12 Tax=Phyllobacteriaceae RepID=Q0P7Q0_9RHIZ Length = 164 Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 1/87 (1%) Query: 536 KVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMIN 595 KV +GK QYIKD+ A +++ I L+ A+L S AG+ L + + A +++IN Sbjct: 1 KVTRGKSSQYIKDEGAFEEFLIGSGLEEASLSL-GSGEVRAGQDLRSAIDDALAVRQLIN 59 Query: 596 RMERRYPKAMLKELIYQPTLTEADLSD 622 + RY + ++++ L L D Sbjct: 60 GLHTRYNRGVVEQAAIAGALNPDVLGD 86 >UniRef50_Q070G7 GyrB-like ATPase domain protein n=1 Tax=Crocodilepox virus RepID=Q070G7_CPRV Length = 494 Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust. Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 8/131 (6%) Query: 9 SIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNS 68 S+ + G V + P ++ G TG MV EVV+NAID + V + Sbjct: 15 SVFEIVGPTDVERHPTLFRGSVRCHTGACRMVREVVENAIDHCACVRAASVYVEVRRHEV 74 Query: 69 VSVQDDGRGIPTGIHPEEGVSA--AEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNAL 126 + I + +GV + ++T + G+ + + VSGG HGVG+ +VNAL Sbjct: 75 TVINTSSMTIKGTV---DGVRCIVPQTMITEMFTLGRSEGRA--VSGG-HGVGLKIVNAL 128 Query: 127 SQKLELVIQRE 137 ++++ + + E Sbjct: 129 AKRIRIEVSDE 139 >UniRef50_D1S521 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit-like protein n=1 Tax=Micromonospora aurantiaca ATCC 27029 RepID=D1S521_9ACTO Length = 207 Score = 43.5 bits (101), Expect = 0.030, Method: Composition-based stats. Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 10/85 (11%) Query: 5 YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVF-EVVDNAIDEAL---AGHCKEII 60 Y + I+VL+ ++VR+RPGMY G D L V VV +A A A H +++ Sbjct: 6 YSLAKIRVLEFDESVRERPGMYFGVGRDDPRLATRVLCAVVGHAFHPATIVAASHTPDVV 65 Query: 61 VTIHADNSVSVQDD------GRGIP 79 I+AD SV DD GRG+P Sbjct: 66 AEINADLIFSVTDDQADVLTGRGMP 90 >UniRef50_Q23CP4 DNA topoisomerase 2 n=3 Tax=Tetrahymena thermophila RepID=Q23CP4_TETTH Length = 784 Score = 42.0 bits (97), Expect = 0.085, Method: Compositional matrix adjust. Identities = 45/216 (20%), Positives = 92/216 (42%), Gaps = 18/216 (8%) Query: 262 FQENIYCFTNNIPQRDGGTHLAGFRAAMTR-TLNAYMDKEGYSKKAKVSATGDDAREGLI 320 Q++I F N +PQ +GGTH+ + + L ++ + + + G R+ + Sbjct: 182 LQKDIISFVNGLPQ-NGGTHVNFINQIIKQDQLIKNLNVQDQDELEVMKQLGKQYRQNVF 240 Query: 321 AVVSVKVPDPKFSSQTKDKLVSSEVK--SAVEQQMNELLAEYLLENPTDAKIVVGKIIDA 378 + S+ V P ++SQ+KD+L +++ +E + + KI + + Sbjct: 241 IIFSLLVHQPSYTSQSKDQLKTNKKDWFDTIELEKYIQQQIQQSSLLQELKIEIQQQTKK 300 Query: 379 ARAREAARRAREMTRR--KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGR 436 + + + ++M K D + + +C L EGDSA + G Sbjct: 301 QQVLKQKDQIKKMNINSVKKLQDAIKIRDRRTEC--------SLLCAEGDSAMSFIRSGL 352 Query: 437 NRKNQAI---LPLKGKILNVEKARFDKMLSSQEVAT 469 + + I PLKGK++NV ++ D+ + E+ + Sbjct: 353 TEQQKQIYGRFPLKGKLMNV-NSKTDRQIGENEILS 387 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0AES7 DNA gyrase subunit B n=740 Tax=root RepID=GYRB_E... 1180 0.0 UniRef50_O51859 DNA gyrase subunit B n=208 Tax=Bacteria RepID=GY... 1079 0.0 UniRef50_Q89B37 DNA gyrase subunit B n=30 Tax=Proteobacteria Rep... 959 0.0 UniRef50_B2UCF3 DNA gyrase subunit B n=47 Tax=Proteobacteria Rep... 949 0.0 UniRef50_B6IVV7 DNA gyrase subunit B n=192 Tax=cellular organism... 942 0.0 UniRef50_A1TI33 DNA gyrase subunit B n=16 Tax=Burkholderiales Re... 921 0.0 UniRef50_D0LFL2 DNA gyrase subunit B n=1 Tax=Haliangium ochraceu... 918 0.0 UniRef50_B8GXQ0 DNA gyrase subunit B n=17 Tax=cellular organisms... 910 0.0 UniRef50_A3EQC0 DNA gyrase subunit B n=7 Tax=Bacteria RepID=A3EQ... 910 0.0 UniRef50_O67137 DNA gyrase subunit B n=13 Tax=cellular organisms... 906 0.0 UniRef50_C1DUC4 DNA gyrase subunit B n=5 Tax=Bacteria RepID=C1DU... 901 0.0 UniRef50_Q9Z8R3 DNA gyrase subunit B n=80 Tax=cellular organisms... 896 0.0 UniRef50_Q1RHT8 DNA gyrase subunit B n=702 Tax=Proteobacteria Re... 888 0.0 UniRef50_UPI0001C311B1 DNA gyrase, B subunit n=1 Tax=Conexibacte... 887 0.0 UniRef50_Q2GD49 DNA gyrase subunit B n=9 Tax=cellular organisms ... 881 0.0 UniRef50_B1ZTK2 DNA gyrase subunit B n=194 Tax=cellular organism... 878 0.0 UniRef50_B2URM5 DNA gyrase subunit B n=25 Tax=Bacteria RepID=B2U... 867 0.0 UniRef50_O33367 DNA gyrase subunit B n=6 Tax=Bacteria RepID=GYRB... 865 0.0 UniRef50_Q1MQ88 DNA gyrase subunit B n=6 Tax=Bacteria RepID=Q1MQ... 864 0.0 UniRef50_B5YGU1 DNA gyrase subunit B n=9 Tax=Bacteria RepID=B5YG... 857 0.0 UniRef50_C3XDF7 DNA gyrase subunit B n=5 Tax=Campylobacterales R... 842 0.0 UniRef50_C5B4P3 DNA gyrase, subunit B n=1 Tax=Methylobacterium e... 826 0.0 UniRef50_A6DH73 DNA gyrase subunit B n=7 Tax=cellular organisms ... 824 0.0 UniRef50_A6G5S5 DNA gyrase subunit B n=11 Tax=Bacteria RepID=A6G... 823 0.0 UniRef50_D2R8B1 DNA gyrase, B subunit n=80 Tax=Bacteria RepID=D2... 822 0.0 UniRef50_D0RQH0 DNA gyrase subunit B n=2 Tax=Bacteria RepID=D0RQ... 821 0.0 UniRef50_Q9ZLX3 DNA gyrase subunit B n=50 Tax=Epsilonproteobacte... 792 0.0 UniRef50_UPI00016C54E0 DNA gyrase subunit B n=1 Tax=Gemmata obsc... 781 0.0 UniRef50_O50627 DNA gyrase subunit B n=82 Tax=cellular organisms... 758 0.0 UniRef50_B8FXX0 DNA gyrase subunit B n=70 Tax=Bacteria RepID=B8F... 744 0.0 UniRef50_Q9X3Y6 DNA gyrase subunit B n=840 Tax=cellular organism... 724 0.0 UniRef50_Q2FUD6 DNA gyrase subunit B n=1 Tax=Methanospirillum hu... 716 0.0 UniRef50_Q04WF3 DNA gyrase subunit B n=20 Tax=Bacteria RepID=Q04... 708 0.0 UniRef50_Q6GKU0 DNA gyrase subunit B n=143 Tax=cellular organism... 700 0.0 UniRef50_C7QFM2 DNA gyrase subunit B n=8 Tax=Bacteria RepID=C7QF... 690 0.0 UniRef50_Q9A0L0 DNA gyrase subunit B n=56 Tax=cellular organisms... 689 0.0 UniRef50_A5TY73 DNA gyrase subunit B n=542 Tax=Bacteria RepID=GY... 685 0.0 UniRef50_Q1V1K8 DNA topoisomerase (ATP-hydrolyzing) chain B (DNA... 676 0.0 UniRef50_C7M118 DNA gyrase subunit B n=1 Tax=Acidimicrobium ferr... 675 0.0 UniRef50_P21558 DNA gyrase subunit B n=61 Tax=cellular organisms... 674 0.0 UniRef50_Q94BZ7 DNA gyrase subunit B, mitochondrial n=83 Tax=cel... 672 0.0 UniRef50_D0MI55 DNA topoisomerase (ATP-hydrolyzing) n=8 Tax=Bact... 672 0.0 UniRef50_B6BRC2 DNA gyrase subunit B n=1 Tax=Candidatus Pelagiba... 671 0.0 UniRef50_B6GDL9 DNA gyrase subunit B n=2 Tax=Collinsella RepID=B... 671 0.0 UniRef50_P50074 DNA gyrase subunit B, novobiocin-resistant n=117... 667 0.0 UniRef50_P34031 DNA gyrase subunit B n=54 Tax=Bacteria RepID=GYR... 667 0.0 UniRef50_D0J983 DNA gyrase subunit B n=22 Tax=cellular organisms... 659 0.0 UniRef50_Q2NJM1 DNA gyrase subunit B n=5 Tax=Mollicutes RepID=Q2... 654 0.0 UniRef50_P43053 DNA gyrase subunit B n=78 Tax=Bacteria RepID=GYR... 648 0.0 UniRef50_P66938 DNA topoisomerase 4 subunit B n=158 Tax=Bacteria... 647 0.0 UniRef50_A9KS52 DNA topoisomerase (ATP-hydrolyzing) n=33 Tax=Bac... 645 0.0 UniRef50_UPI0001A7B046 ATP binding / DNA binding / DNA topoisome... 643 0.0 UniRef50_B7G298 Predicted protein n=3 Tax=cellular organisms Rep... 641 0.0 UniRef50_Q2S2H3 Type II DNA topoisomerase, B subunit n=3 Tax=Bac... 638 0.0 UniRef50_B3TAI0 Putative DNA gyrase B n=1 Tax=uncultured marine ... 636 0.0 UniRef50_C4G1I8 Putative uncharacterized protein n=1 Tax=Abiotro... 620 e-176 UniRef50_D1BTM8 DNA topoisomerase (ATP-hydrolyzing) n=8 Tax=Acti... 614 e-174 UniRef50_P50028 DNA gyrase subunit B n=331 Tax=cellular organism... 614 e-174 UniRef50_D2NTW6 Type IIA topoisomerase, B subunit n=10 Tax=Actin... 609 e-172 UniRef50_B9ZQ26 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Thio... 607 e-172 UniRef50_C6PY14 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Clos... 602 e-170 UniRef50_A0Q197 DNA topoisomerase IV subunit B n=34 Tax=Clostrid... 601 e-170 UniRef50_Q83G36 DNA gyrase subunit B-like protein n=2 Tax=Trophe... 600 e-170 UniRef50_Q59526 DNA topoisomerase 4 subunit B n=9 Tax=Bacteria R... 595 e-168 UniRef50_B3LD45 DNA gyrase subunit b, putative n=1 Tax=Plasmodiu... 593 e-168 UniRef50_P78016 DNA topoisomerase 4 subunit B n=3 Tax=Mycoplasma... 591 e-167 UniRef50_A8LVU4 DNA gyrase subunit B domain protein n=37 Tax=Act... 591 e-167 UniRef50_A1SCM1 DNA gyrase subunit B n=28 Tax=Actinomycetales Re... 587 e-166 UniRef50_A0LUT9 DNA topoisomerase (ATP-hydrolyzing) n=15 Tax=Act... 584 e-165 UniRef50_P94281 DNA gyrase subunit B n=211 Tax=cellular organism... 579 e-163 UniRef50_Q98RQ4 DNA gyrase subunit B n=13 Tax=cellular organisms... 573 e-162 UniRef50_Q4AAR9 Topoisomerase IV subunit B n=9 Tax=Mycoplasma Re... 573 e-162 UniRef50_P43703 DNA topoisomerase 4 subunit B n=456 Tax=Bacteria... 568 e-160 UniRef50_D0WQJ3 Putative DNA gyrase subunit B n=1 Tax=Actinomyce... 565 e-159 UniRef50_C0W359 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Acti... 564 e-159 UniRef50_D1C5K6 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Spha... 560 e-158 UniRef50_Q9FAX1 DNA gyrase subunit B (Fragment) n=60 Tax=Bacteri... 557 e-157 UniRef50_Q9FAX2 DNA gyrase subunit B (Fragment) n=166 Tax=root R... 548 e-154 UniRef50_D0RNK2 DNA topoisomerase IV, B subunit n=1 Tax=alpha pr... 538 e-151 UniRef50_A7I8U0 DNA gyrase subunit B n=1 Tax=Candidatus Methanor... 529 e-148 UniRef50_B3R5I8 DNA topoisomerase IV, subunit B n=15 Tax=Proteob... 526 e-148 UniRef50_Q18GY2 DNA gyrase subunit B n=10 Tax=cellular organisms... 512 e-143 UniRef50_Q9X3Y5 DNA gyrase subunit B (Fragment) n=740 Tax=cellul... 511 e-143 UniRef50_P77966 Ssp gyrB intein n=45 Tax=cellular organisms RepI... 503 e-140 UniRef50_Q02880 DNA topoisomerase 2-beta n=175 Tax=Eukaryota Rep... 499 e-139 UniRef50_O24308 DNA topoisomerase 2 n=3 Tax=fabids RepID=TOP2_PEA 496 e-138 UniRef50_Q44272 DNA gyrase subunit B (Fragment) n=2942 Tax=cellu... 496 e-138 UniRef50_Q10XN8 DNA gyrase subunit B n=6 Tax=Bacteria RepID=Q10X... 495 e-138 UniRef50_P11388 DNA topoisomerase 2-alpha n=47 Tax=Eukaryota Rep... 495 e-138 UniRef50_UPI0000DA3D74 PREDICTED: similar to topoisomerase (DNA)... 494 e-138 UniRef50_B6K4K4 DNA topoisomerase 2 n=1 Tax=Schizosaccharomyces ... 493 e-137 UniRef50_P08096 DNA topoisomerase 2 n=1 Tax=Schizosaccharomyces ... 490 e-137 UniRef50_Q4UIX0 DNA topoisomerase II, putative n=2 Tax=Theileria... 487 e-136 UniRef50_A8S818 Putative uncharacterized protein n=6 Tax=Bacteri... 486 e-135 UniRef50_C1E5N4 DNA topoisomerase 2 n=1 Tax=Micromonas sp. RCC29... 485 e-135 UniRef50_Q5KSK9 DNA topoisomerase 2 n=5 Tax=Basidiomycota RepID=... 484 e-135 UniRef50_UPI0000DB6EE1 PREDICTED: similar to DNA topoisomerase 2... 482 e-134 UniRef50_D1ZCL6 DNA topoisomerase 2 n=6 Tax=Sordariomyceta RepID... 480 e-134 UniRef50_Q8SS63 DNA topoisomerase 2 n=1 Tax=Encephalitozoon cuni... 480 e-133 UniRef50_Q9Y8G8 DNA topoisomerase 2 n=79 Tax=cellular organisms ... 479 e-133 UniRef50_B9PK68 DNA topoisomerase 2 n=3 Tax=Toxoplasma gondii Re... 478 e-133 UniRef50_A7ASL8 DNA gyrase subunit B, putative n=1 Tax=Babesia b... 478 e-133 UniRef50_B3H4G2 DNA topoisomerase 2 n=14 Tax=Magnoliophyta RepID... 476 e-132 UniRef50_P30182 DNA topoisomerase 2 n=6 Tax=Eukaryota RepID=TOP2... 476 e-132 UniRef50_A8PTE9 DNA topoisomerase 2 n=1 Tax=Malassezia globosa C... 471 e-131 UniRef50_A5E7X7 DNA topoisomerase 2 n=4 Tax=Saccharomycetaceae R... 470 e-130 UniRef50_Q6PUA3 DNA topoisomerase 2 n=4 Tax=Tetrahymena thermoph... 469 e-130 UniRef50_A3DC64 DNA topoisomerase (ATP-hydrolyzing) n=11 Tax=Bac... 468 e-130 UniRef50_A7ANB1 DNA topoisomerase 2 n=3 Tax=Piroplasmida RepID=A... 468 e-130 UniRef50_C5KAQ6 DNA topoisomerase 2 n=1 Tax=Perkinsus marinus AT... 467 e-130 UniRef50_B0EP10 DNA topoisomerase 2 n=3 Tax=Entamoeba RepID=B0EP... 466 e-129 UniRef50_Q7YZS4 DNA topoisomerase 2 n=1 Tax=Physarum polycephalu... 466 e-129 UniRef50_Q1NK64 DNA topoisomerase II:ATP-binding region, ATPase-... 462 e-128 UniRef50_B1ZME3 DNA topoisomerase type IIA subunit B region 2 do... 461 e-128 UniRef50_Q55BP5 Probable DNA topoisomerase 2 n=1 Tax=Dictyosteli... 458 e-127 UniRef50_A6TSS9 DNA gyrase, subunit B domain protein n=1 Tax=Alk... 456 e-126 UniRef50_P41001 DNA topoisomerase 2 n=10 Tax=Eukaryota RepID=TOP... 455 e-126 UniRef50_A7TEE2 DNA topoisomerase 2 n=1 Tax=Vanderwaltozyma poly... 453 e-125 UniRef50_P90520 DNA topoisomerase 2, mitochondrial n=1 Tax=Dicty... 449 e-124 UniRef50_P06786 DNA topoisomerase 2 n=27 Tax=Fungi/Metazoa group... 449 e-124 UniRef50_B7G2K9 DNA topoisomerase 2 (Fragment) n=1 Tax=Phaeodact... 449 e-124 UniRef50_Q8GD47 DNA gyrase subunit B (Fragment) n=21 Tax=Bacteri... 446 e-123 UniRef50_D2UZM0 DNA topoisomerase II n=1 Tax=Naegleria gruberi R... 446 e-123 UniRef50_A0C0L0 DNA topoisomerase 2 n=3 Tax=Paramecium tetraurel... 445 e-123 UniRef50_B7XIW3 DNA topoisomerase 2 n=1 Tax=Enterocytozoon biene... 445 e-123 UniRef50_D2QHC5 DNA topoisomerase type IIA subunit B region 2 do... 442 e-122 UniRef50_A1EGM8 DNA gyrase subunit B (Fragment) n=1 Tax=uncultur... 441 e-122 UniRef50_A8Q6X4 DNA topoisomerase 2 n=1 Tax=Brugia malayi RepID=... 441 e-122 UniRef50_A4HGT2 DNA topoisomerase 2 n=11 Tax=Trypanosomatidae Re... 440 e-122 UniRef50_B2RL68 DNA topoisomerase IV B subunit n=60 Tax=Bacteria... 440 e-121 UniRef50_A5K8Q8 DNA gyrase subunit b, putative n=1 Tax=Plasmodiu... 440 e-121 UniRef50_UPI00016B23A5 DNA gyrase subunit B n=1 Tax=candidate di... 438 e-121 UniRef50_Q7RHG3 DNA topoisomerase II, putative n=3 Tax=Plasmodiu... 437 e-121 UniRef50_D2V5K5 DNA topoisomerase II n=1 Tax=Naegleria gruberi R... 435 e-120 UniRef50_Q59189 DNA topoisomerase 4 subunit B n=27 Tax=Bacteria ... 434 e-120 UniRef50_Q6RCM1 DNA topoisomerase 2 n=2 Tax=Trichomonas vaginali... 431 e-119 UniRef50_D0MV61 DNA topoisomerase 2 n=2 Tax=Eukaryota RepID=D0MV... 430 e-119 UniRef50_Q5UQE6 DNA topoisomerase 2 n=3 Tax=root RepID=TOP2_MIMIV 430 e-118 UniRef50_Q9HGH7 DNA topoisomerase 2 (Fragment) n=1 Tax=Pichia ku... 427 e-118 UniRef50_Q4RIW2 DNA topoisomerase 2 (Fragment) n=1 Tax=Tetraodon... 426 e-117 UniRef50_C4R475 DNA topoisomerase 2 n=1 Tax=Pichia pastoris GS11... 425 e-117 UniRef50_C7PPD8 DNA topoisomerase type IIA subunit B region 2 do... 424 e-117 UniRef50_O41065 A583L protein n=7 Tax=Chlorovirus RepID=O41065_P... 416 e-114 UniRef50_C7U0P4 DNA topoisomerase II n=2 Tax=unclassified Phycod... 415 e-114 UniRef50_B8C981 DNA topoisomerase 2 (Fragment) n=1 Tax=Thalassio... 411 e-113 UniRef50_Q2JC55 DNA topoisomerase II n=4 Tax=Actinomycetales Rep... 405 e-111 UniRef50_B1BBK7 DNA topoisomerase n=5 Tax=root RepID=B1BBK7_CLOBO 404 e-111 UniRef50_A7XYG8 GyrB (Fragment) n=6 Tax=Chlamydia trachomatis Re... 400 e-109 UniRef50_C8XUB6 Topoisomerase II large subunit n=1 Tax=Shigella ... 398 e-109 UniRef50_Q6UGM9 DNA gyrase B subunit (Fragment) n=1 Tax=Fusobact... 389 e-106 UniRef50_Q8HFR9 DNA topoisomerase 2 n=1 Tax=Bodo saltans RepID=Q... 389 e-106 UniRef50_P27570 DNA topoisomerase 2 n=15 Tax=Trypanosomatidae Re... 388 e-106 UniRef50_A6N697 DNA gyrase subunit B (Fragment) n=2 Tax=uncultur... 386 e-105 UniRef50_D0NA12 DNA topoisomerase 2 n=1 Tax=Phytophthora infesta... 384 e-105 UniRef50_C9S837 DNA topoisomerase 2 n=2 Tax=Sordariomycetes RepI... 378 e-103 UniRef50_C6LX36 DNA topoisomerase 2 n=3 Tax=Giardia intestinalis... 376 e-102 UniRef50_C9DGI8 Gp60plus39 DNA topoisomerase subunit n=1 Tax=Def... 374 e-102 UniRef50_B9U3G6 DNA topoisomerase 2 (Fragment) n=1 Tax=Pleurotus... 371 e-101 UniRef50_D2RAT5 DNA gyrase, B subunit, C-terminal domain protein... 370 e-100 UniRef50_UPI0001976865 DNA topoisomerase (ATP-hydrolyzing) n=1 T... 366 2e-99 UniRef50_B6EUG7 DNA gyrase subunit B (Fragment) n=6 Tax=Actinomy... 365 4e-99 UniRef50_P34534 Putative DNA topoisomerase 2, mitochondrial n=5 ... 365 4e-99 UniRef50_C0DAN0 Putative uncharacterized protein (Fragment) n=1 ... 362 5e-98 UniRef50_D2QB32 GyrB2 DNA gyrase subunit B n=8 Tax=Bifidobacteri... 361 5e-98 UniRef50_B2ZYK3 Type IIA topoisomerase n=1 Tax=Ralstonia phage R... 359 3e-97 UniRef50_B6XTR9 Putative uncharacterized protein n=2 Tax=Bifidob... 358 6e-97 UniRef50_A3Q8K7 DNA topoisomerase (ATP-hydrolyzing) n=6 Tax=Myco... 358 7e-97 UniRef50_UPI0001924D0A PREDICTED: similar to DNA topoisomerase 2... 352 4e-95 UniRef50_B4V0A2 DNA gyrase subunit B n=1 Tax=Streptomyces sp. Mg... 342 5e-92 UniRef50_Q9QSK1 DNA topoisomerase 2 n=1 Tax=Invertebrate iridesc... 341 8e-92 UniRef50_Q56C43 Gp60plus39 DNA topoisomerase subunit n=3 Tax=T4-... 340 2e-91 UniRef50_Q8I528 Term=DNA gyrase subunit B;evidence=inferred from... 340 2e-91 UniRef50_B5H7D6 DNA gyrase subunit B n=2 Tax=Streptomyces RepID=... 327 1e-87 UniRef50_C1SL26 DNA gyrase subunit B n=1 Tax=Denitrovibrio aceti... 326 2e-87 UniRef50_C3IT50 DNA gyrase subunit B n=3 Tax=Bacillus thuringien... 324 7e-87 UniRef50_Q76Z86 Topoisomerase II large subunit n=1 Tax=Aeromonas... 323 1e-86 UniRef50_D2XAH7 DNA topoisomerase II n=1 Tax=Marseillevirus RepI... 323 2e-86 UniRef50_Q196X4 DNA topoisomerase 2 n=1 Tax=Invertebrate iridesc... 320 1e-85 UniRef50_D2TEU4 Putative DNA topoisomerase n=2 Tax=dsDNA viruses... 307 1e-81 UniRef50_B3SFQ4 Putative uncharacterized protein (Fragment) n=1 ... 304 1e-80 UniRef50_Q04PE7 DNA topoisomerase (ATP-hydrolyzing), subunit B n... 303 2e-80 UniRef50_Q5CQG8 DNA topoisomerase 2 n=4 Tax=Apicomplexa RepID=Q5... 296 2e-78 UniRef50_A7K5X7 DNA gyrase subunit B n=5 Tax=Gammaproteobacteria... 295 3e-78 UniRef50_C9E3K9 DNA gyrase subunit B (Fragment) n=1 Tax=Rhodococ... 293 2e-77 UniRef50_B1N7R8 Gyrase b (Fragment) n=1 Tax=uncultured bacterium... 291 7e-77 UniRef50_P09176 DNA topoisomerase large subunit n=13 Tax=T4-like... 277 1e-72 UniRef50_Q0QCK3 ParE (Fragment) n=163 Tax=cellular organisms Rep... 277 1e-72 UniRef50_B9PF30 Predicted protein n=6 Tax=cellular organisms Rep... 272 4e-71 UniRef50_C0F8C8 DNA gyrase, B subunit (Fragment) n=1 Tax=Wolbach... 270 2e-70 UniRef50_B4YQA0 DNA gyrase subunit B (Fragment) n=1 Tax=Lactobac... 268 8e-70 UniRef50_A3SXB5 DNA topoisomerase IV subunit B n=1 Tax=Sulfitoba... 253 2e-65 UniRef50_A0BK44 Chromosome undetermined scaffold_111, whole geno... 248 9e-64 UniRef50_B0YNR7 DNA gyrase subunit B (Fragment) n=7 Tax=Gammapro... 236 2e-60 UniRef50_UPI00016C4A69 DNA gyrase subunit B n=2 Tax=Gemmata obsc... 228 7e-58 UniRef50_A6N6C7 DNA gyrase subunit B (Fragment) n=1 Tax=uncultur... 223 2e-56 UniRef50_A8NKQ4 Putative uncharacterized protein n=1 Tax=Coprino... 221 6e-56 UniRef50_Q1CZR7 DNA gyrase, B subunit, truncated n=1 Tax=Myxococ... 221 7e-56 UniRef50_D2J2Q7 DNA gyrase subunit B (Fragment) n=7 Tax=Coryneba... 220 2e-55 UniRef50_UPI0001C4799C UPI0001C4799C related cluster n=1 Tax=unk... 218 5e-55 UniRef50_Q6Y3A9 Gyrase B (Fragment) n=1 Tax=Pelobacter acidigall... 213 2e-53 UniRef50_Q2SFQ7 Type IIA topoisomerase (DNA gyrase/topo II, topo... 212 6e-53 UniRef50_C1ZHM4 Type IIA topoisomerase (DNA gyrase/topo II, topo... 210 2e-52 UniRef50_A9CRV4 DNA gyrase subunit B (Fragment) n=2 Tax=Bradyrhi... 210 2e-52 UniRef50_B1PJM5 DNA gyrase subunit B (Fragment) n=1 Tax=Micromon... 208 9e-52 UniRef50_D1AIT2 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Seba... 196 2e-48 UniRef50_C5Z2Y6 Putative uncharacterized protein Sb10g016438 (Fr... 192 4e-47 UniRef50_A8V367 Gyrase B (Fragment) n=1 Tax=Hydrogenivirga sp. 1... 192 5e-47 UniRef50_A7C3L4 Topoisomerase B subunit n=1 Tax=Beggiatoa sp. PS... 185 7e-45 UniRef50_Q27537 Chromosome instability 4 n=3 Tax=Chromadorea Rep... 183 2e-44 UniRef50_C0SNC2 DNA gyrase subunit B (Fragment) n=87 Tax=Lactoba... 177 2e-42 UniRef50_UPI0001698B4B DNA gyrase, B subunit n=1 Tax=Endoriftia ... 176 3e-42 UniRef50_Q6Y3B0 Gyrase B (Fragment) n=1 Tax=Geobacter pelophilus... 172 4e-41 UniRef50_B9XLD1 Type IIA topoisomerase (DNA gyrase/topo II topoi... 169 3e-40 UniRef50_UPI0001788AA3 transcriptional regulator, ArsR family n=... 169 3e-40 UniRef50_Q44273 DNA gyrase subunit B (Fragments) n=5 Tax=Acineto... 167 1e-39 UniRef50_Q9FYE9 DNA gyrase subunit B-like protein n=3 Tax=Arabid... 166 3e-39 UniRef50_C3RSA4 DNA gyrase subunit B (Fragment) n=3 Tax=Lactobac... 164 1e-38 UniRef50_Q2B8E8 DNA gyrase, B subunit n=1 Tax=Bacillus sp. NRRL ... 144 2e-32 UniRef50_UPI0001908742 DNA topoisomerase IV subunit B n=1 Tax=Rh... 141 1e-31 UniRef50_D2PP74 GCN5-related N-acetyltransferase n=1 Tax=Kribbel... 137 2e-30 UniRef50_C7UEA1 Predicted protein n=22 Tax=Enterococcus faecalis... 135 6e-30 UniRef50_A5M9T1 DNA gyrase subunit B n=2 Tax=Streptococcus pneum... 132 6e-29 UniRef50_A0MYL3 DNA gyrase B (Fragment) n=14 Tax=Streptomyces Re... 130 2e-28 UniRef50_UPI0000D546F8 DNA gyrase, B subunit n=1 Tax=Psychroflex... 129 5e-28 UniRef50_Q9F8M6 DNA gyrase subunit B (Fragment) n=1 Tax=Carboxyd... 124 1e-26 UniRef50_Q7UUI4 DNA gyrase subunit B n=1 Tax=Rhodopirellula balt... 124 2e-26 UniRef50_UPI00016B21F7 DNA gyrase subunit B n=1 Tax=candidate di... 123 2e-26 UniRef50_A6G3Y8 Type IIA topoisomerase (DNA gyrase/topo II, topo... 122 4e-26 UniRef50_C8NCI6 DNA gyrase subunit B n=1 Tax=Cardiobacterium hom... 122 7e-26 UniRef50_Q6E0M3 GyrB (Fragment) n=1 Tax=Bacillus thuringiensis R... 119 5e-25 UniRef50_A9ZPQ0 DNA gyrase subunit B (Fragment) n=5 Tax=Coryneba... 118 1e-24 UniRef50_B1PL25 DNA gyrase subunit B (Fragment) n=79 Tax=Bacteri... 117 1e-24 UniRef50_B4V6F8 Putative uncharacterized protein n=3 Tax=Actinom... 115 8e-24 UniRef50_UPI0000382E10 COG0187: Type IIA topoisomerase (DNA gyra... 104 2e-20 UniRef50_Q9K2S8 GyrB protein (Fragment) n=2 Tax=Mycoplasma homin... 96 4e-18 UniRef50_Q401L8 DNA gyrase subunit B (Fragment) n=1 Tax=Mycobact... 95 9e-18 UniRef50_A4YWI0 DNA gyrase subunit B GyrB n=1 Tax=Bradyrhizobium... 90 3e-16 UniRef50_UPI0001698B4D DNA gyrase subunit B n=1 Tax=Endoriftia p... 89 5e-16 UniRef50_B2G4Y3 GyrB protein (Fragment) n=1 Tax=Bacillus sp. AKG... 89 7e-16 UniRef50_Q5FEK8 Putative uncharacterized protein n=1 Tax=Ehrlich... 84 2e-14 UniRef50_D0L8E8 DNA topoisomerase n=22 Tax=cellular organisms Re... 78 1e-12 Sequences not found previously or not previously below threshold: UniRef50_Q00942 DNA topoisomerase 2 n=7 Tax=African swine fever ... 189 5e-46 UniRef50_A0BK45 Chromosome undetermined scaffold_111, whole geno... 117 2e-24 UniRef50_C7P9T7 Type IIA topoisomerase (DNA gyrase/topo II topoi... 111 1e-22 UniRef50_Q23CP4 DNA topoisomerase 2 n=3 Tax=Tetrahymena thermoph... 104 2e-20 UniRef50_UPI0001909AAD DNA gyrase subunit B n=1 Tax=Rhizobium et... 88 1e-15 UniRef50_Q070G1 GyrB-like ATPase domain protein n=1 Tax=Crocodil... 79 5e-13 UniRef50_Q0P7Q0 DNA gyrase subunit B (Fragment) n=12 Tax=Phyllob... 71 2e-10 UniRef50_P23992 DNA topoisomerase small subunit n=1 Tax=Enteroba... 69 1e-09 UniRef50_A9DKM1 DNA gyrase subunit B n=1 Tax=Kordia algicida OT-... 69 1e-09 >UniRef50_P0AES7 DNA gyrase subunit B n=740 Tax=root RepID=GYRB_ECO57 Length = 804 Score = 1180 bits (3052), Expect = 0.0, Method: Composition-based stats. Identities = 804/804 (100%), Positives = 804/804 (100%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII Sbjct: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 Query: 61 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV Sbjct: 61 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVT 180 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVT Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVT 180 Query: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNI 240 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNI Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNI 240 Query: 241 FYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKE 300 FYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKE Sbjct: 241 FYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKE 300 Query: 301 GYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEY 360 GYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEY Sbjct: 301 GYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEY 360 Query: 361 LLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSEL 420 LLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSEL Sbjct: 361 LLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSEL 420 Query: 421 YLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR 480 YLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR Sbjct: 421 YLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR 480 Query: 481 DEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKG 540 DEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKG Sbjct: 481 DEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKG 540 Query: 541 KQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERR 600 KQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERR Sbjct: 541 KQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERR 600 Query: 601 YPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLF 660 YPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLF Sbjct: 601 YPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLF 660 Query: 661 EPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFE 720 EPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFE Sbjct: 661 EPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFE 720 Query: 721 QALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTL 780 QALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTL Sbjct: 721 QALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTL 780 Query: 781 MGDAVEPRRAFIEENALKAANIDI 804 MGDAVEPRRAFIEENALKAANIDI Sbjct: 781 MGDAVEPRRAFIEENALKAANIDI 804 >UniRef50_O51859 DNA gyrase subunit B n=208 Tax=Bacteria RepID=GYRB_VIBPA Length = 805 Score = 1079 bits (2790), Expect = 0.0, Method: Composition-based stats. Identities = 623/806 (77%), Positives = 703/806 (87%), Gaps = 3/806 (0%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 MS +YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDN+IDEALAGHCK+I+ Sbjct: 1 MSENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIV 60 Query: 61 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 VTIH DNSVSV DDGRGIPT +HPEE VSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV Sbjct: 61 VTIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVT 180 SVVNALS+K+ L I R G IH Q Y HG P+APLAV G+T+KTGT +RFWPS ETF+N T Sbjct: 121 SVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDTDKTGTQIRFWPSAETFSN-T 179 Query: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRD-GKEDHFHYEGGIKAFVEYLNKNKTPIHPN 239 EF Y+ILAKRLRELSFLNSGVSI+L D+R+ K+DHF YEGGI+AFV++LN NKTPI Sbjct: 180 EFHYDILAKRLRELSFLNSGVSIKLIDEREADKQDHFMYEGGIQAFVQHLNTNKTPIIEK 239 Query: 240 IFYFSTEK-DGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 IF+F E+ DGI VEVA+QWNDGFQENI+CFTNNIPQRDGGTHLAGFRAA+TRTLN++MD Sbjct: 240 IFHFDLEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAALTRTLNSFMD 299 Query: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 KEG+SKKAK + +GDDAREGL AVVSVKVPDPKFSSQTKDKLVSSEVKSAVE M E L+ Sbjct: 300 KEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLS 359 Query: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 E+L+ENP++AK+V KIIDAARAREAAR+AREMTRRKGALDLAGLPGKLADCQE+DPALS Sbjct: 360 EFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 419 Query: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 ELY+VEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI Sbjct: 420 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479 Query: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 GRDEYNPDKLRYH+IIIMTDADVDGSHIRTLLLTFFYRQMPE++ERG+VYIAQPPLYKVK Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPPLYKVK 539 Query: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598 KGKQEQYIKD+EAM+QYQ+S+ALD A+LH NA APALAGEALEKLV +YNA K+ +RM Sbjct: 540 KGKQEQYIKDEEAMNQYQVSLALDNASLHVNAEAPALAGEALEKLVQQYNAGIKLADRMS 599 Query: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658 RRYP+A++ ELIY LT D V W LV +LN KE SQ+ ++V +AE Sbjct: 600 RRYPRALVHELIYTSRLTAEQCHDAAAVEAWTKQLVEQLNAKEVGASQYSYEVELHAELG 659 Query: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718 L P + VRTHGV ++ L +F+ EY ++ L E L GLLEE A+I+RGER PV+S Sbjct: 660 LSLPKIIVRTHGVTHEHALSVDFLNSKEYGKLADLSEVLDGLLEEGAYIKRGERTLPVSS 719 Query: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 F +AL+WLVKES RGLS QRYKGLGEMNP+QLWETTMDPE+RRM++VT++DA+ ADQLFT Sbjct: 720 FAEALEWLVKESMRGLSRQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADQLFT 779 Query: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 TLMGD VEPRR FIEENALK AN+D+ Sbjct: 780 TLMGDQVEPRRHFIEENALKVANLDV 805 >UniRef50_Q89B37 DNA gyrase subunit B n=30 Tax=Proteobacteria RepID=GYRB_BUCBP Length = 804 Score = 959 bits (2479), Expect = 0.0, Method: Composition-based stats. Identities = 504/806 (62%), Positives = 644/806 (79%), Gaps = 4/806 (0%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 M N+Y SS+IK+LKGLDAV+KRPGMYIG+TDDGTGLHHMVFEVVDN+IDEALAG CK II Sbjct: 1 MKNTYTSSNIKILKGLDAVKKRPGMYIGNTDDGTGLHHMVFEVVDNSIDEALAGFCKNII 60 Query: 61 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 VTIH DNS+S+QDDGRGIPT IH EEG+SAAEVIMTVLHAGGKFD+ SYKVSGGLHGVGV Sbjct: 61 VTIHDDNSISIQDDGRGIPTDIHDEEGISAAEVIMTVLHAGGKFDNTSYKVSGGLHGVGV 120 Query: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVT 180 SVVNALS+KLEL I R+ KI+ QIY++G P+ L++ G T+ TGT +RFWP+LE FTNVT Sbjct: 121 SVVNALSKKLELFIYRDKKIYYQIYKNGYPKNTLSIIGYTKITGTKIRFWPNLEIFTNVT 180 Query: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNI 240 +F +EIL+KRLRELSFLNS VSI L D + ++F+ +GG+K F+ YLNKNK PIH I Sbjct: 181 QFNWEILSKRLRELSFLNSNVSIYLDDAKKHINENFYQQGGLKEFIIYLNKNKKPIHSKI 240 Query: 241 FYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKE 300 FYFS++K+ + VE+A+QWN GFQENIYC+TNNIPQ+DGGTHL+GFR+A+TRT+N Y+DKE Sbjct: 241 FYFSSKKNNVEVEIAMQWNKGFQENIYCYTNNIPQQDGGTHLSGFRSALTRTMNNYLDKE 300 Query: 301 GYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEY 360 GY KK K++ GDD REGL A++S+K+ DPKFSSQTK+KLVSSEVKSA+E +NE L E+ Sbjct: 301 GYIKKNKINIIGDDTREGLTAIISIKINDPKFSSQTKNKLVSSEVKSALESLVNEFLMEF 360 Query: 361 LLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSEL 420 LLENP ++K +V KII+++R R AARRAREMTR+KG LDL GLPGKL+DCQERDPALSE+ Sbjct: 361 LLENPQESKNIVTKIIESSRVRNAARRAREMTRKKGTLDLIGLPGKLSDCQERDPALSEI 420 Query: 421 YLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR 480 YLVEGDSAGGSAKQ RNRKNQAILPLKGKILNVEKAR++KMLSSQEV TLITALGCGIG+ Sbjct: 421 YLVEGDSAGGSAKQARNRKNQAILPLKGKILNVEKARYEKMLSSQEVTTLITALGCGIGK 480 Query: 481 DEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKG 540 +EYNP+KLRYH IIIMTDADVDGSHIRTLLLTFFYR MPEI++RG++YIAQPPLYKV K Sbjct: 481 NEYNPEKLRYHRIIIMTDADVDGSHIRTLLLTFFYRYMPEIIQRGYLYIAQPPLYKVTKN 540 Query: 541 KQEQYIKDDEAMDQYQISIALDGATLHTNASA--PALAGEALEKLVSEYNATQKMINRME 598 + +YIKD M+ Y++S AL+ L +N L+K++SEY Q + +++ Sbjct: 541 NKTRYIKDKNTMENYKLSTALENTILESNTDKEIKIKCNYTLKKIISEYKIIQTIFFKIK 600 Query: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658 +P +L E++Y P L +L+DE V W+N V +L K + + N++ Sbjct: 601 DNFPLNILNEMLYHPKLN--NLNDEVYVNNWINNFVIQLQKKSSSTRNYSAHITFNSKDK 658 Query: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718 +FEP+++++ + +Y D FI EY++I +LG+KL+ +++++ I++ + + + Sbjct: 659 IFEPLIKIQKNAEVKEYKFDITFINSYEYQKIYSLGKKLQEMIQKNIHIKKNNKTYSIKN 718 Query: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 F++ + L++ S + + IQRYKGLGEMNPEQLW+TTM+PE+RRML++T+ + ++LF Sbjct: 719 FQKNFELLIQNSFKNVLIQRYKGLGEMNPEQLWKTTMNPETRRMLKITLHNIDTTNKLFN 778 Query: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 TLMGD+VEPR+ FIE ALKA+NIDI Sbjct: 779 TLMGDSVEPRKLFIELYALKASNIDI 804 >UniRef50_B2UCF3 DNA gyrase subunit B n=47 Tax=Proteobacteria RepID=B2UCF3_RALPJ Length = 842 Score = 949 bits (2454), Expect = 0.0, Method: Composition-based stats. Identities = 494/831 (59%), Positives = 609/831 (73%), Gaps = 30/831 (3%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 +NSYD++SI++L+GL+AVRKRPGMYIGDT DGTGLHH+VFEV+DN+IDEALAGHC EI V Sbjct: 14 ANSYDAASIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGHCTEIQV 73 Query: 62 TIHADNSVSVQDDGRGIPTGIH----PEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHG 117 TIH DNS+SV D+GRGIPTGI E SA E+ MT LHAGGKF+ NSYKVSGGLHG Sbjct: 74 TIHTDNSISVIDNGRGIPTGIKFDDKHEPKRSATEIAMTELHAGGKFNQNSYKVSGGLHG 133 Query: 118 VGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQ-----------------APLAVTGET 160 VGVS VN LS+ +++ +++ GK+H + GVPQ +PL V G T Sbjct: 134 VGVSCVNGLSKWMKVTVRQGGKVHYIEFAQGVPQNRLIETVQGPDGQMVEVSPLRVLGTT 193 Query: 161 EKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEG 220 +K GT V F E FTNV E+ YEIL+KR+RELSFLN+GV IRL D+R GKE+ F + G Sbjct: 194 DKRGTEVHFLADEEIFTNV-EYHYEILSKRIRELSFLNNGVHIRLTDQRTGKEEDFAFSG 252 Query: 221 GIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGT 280 G+K FVEY+NKNKT +HP IF+ + EKDG+ VEV++QWND + E + CFTNNIPQRDGGT Sbjct: 253 GVKGFVEYINKNKTVLHPTIFFAAGEKDGVAVEVSMQWNDAYNEQVLCFTNNIPQRDGGT 312 Query: 281 HLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKL 340 HL G RAAMTR +N Y+ +KKAKV +GDD REGL V+SVKVP+PKFSSQTKDKL Sbjct: 313 HLTGLRAAMTRVINKYIADNEIAKKAKVDTSGDDMREGLTCVLSVKVPEPKFSSQTKDKL 372 Query: 341 VSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDL 400 VSSEV+ VE+ + + L+++LLE P DAKI+ GKI++AARAREAAR+AREMTRRKG LD Sbjct: 373 VSSEVRLPVEEVVAKALSDFLLETPVDAKIICGKIVEAARAREAARKAREMTRRKGVLDG 432 Query: 401 AGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 460 GLPGKLADCQE+DPALSEL++VEGDSAGGSAKQGR+RK QAILPLKGKILNVE+ARFDK Sbjct: 433 MGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDK 492 Query: 461 MLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPE 520 MLSSQEV TLITA+G GIG+D+YN DKLRYH IIIMTDADVDGSHIRTLLLTFFYRQMPE Sbjct: 493 MLSSQEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPE 552 Query: 521 IVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEAL 580 I+ERGHVYIAQPPLYK+K GK+E+YIKDD M Y + ALD A L +AG+AL Sbjct: 553 IIERGHVYIAQPPLYKIKHGKEERYIKDDVEMAAYLVRQALDTAVL-VRPDGTEIAGDAL 611 Query: 581 EKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDK 640 +L +Y ++ +I R+ R L+ + +L ++ + + R + A + E+ Sbjct: 612 AELARQYQLSRGVIERLSRVIDADALRAIAEGVSLDLSNEAAAEASARTLKARLLEMQGN 671 Query: 641 EQH---GSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKL 697 G+ + + + + +V R HG +D +F+ G +Y + + Sbjct: 672 ASSANGGATADAFMQYDEKTEKYRIMVVRRQHGNQRLSHIDADFVAGADYTALSSTAATF 731 Query: 698 RGLLEEDAFIERGE----RRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWET 753 +GL+ + A + RG R Q VA F A+ WL+ E+ RG+S QRYKGLGEMNPEQLWET Sbjct: 732 QGLIGDGAKVRRGTGDKVREQNVADFHAAMTWLLSEAERGVSRQRYKGLGEMNPEQLWET 791 Query: 754 TMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 TMD RR+LRV ++DAIAADQ+FTTLMGD VEPRR FIE NAL A NID+ Sbjct: 792 TMDVTQRRLLRVQIEDAIAADQIFTTLMGDDVEPRRNFIESNALVARNIDV 842 >UniRef50_B6IVV7 DNA gyrase subunit B n=192 Tax=cellular organisms RepID=B6IVV7_RHOCS Length = 876 Score = 942 bits (2435), Expect = 0.0, Method: Composition-based stats. Identities = 458/864 (53%), Positives = 583/864 (67%), Gaps = 63/864 (7%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 + Y +SSIKVLKGLDAVRKRPGMYIGDTDDG+GLHHMV+EVVDNAIDEALAG+ + V Sbjct: 15 AEEYGASSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGYADRVEV 74 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 T++AD SV+V+D+GRGIP IHP EGVSAAEVIMT LHAGGKFD NSYKVSGGLHGVGVS Sbjct: 75 TLNADGSVTVRDNGRGIPVDIHPGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVS 134 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-----------TGTMVRFW 170 VVNALS+ L L + R+G++ + HG APLA G TGT V F Sbjct: 135 VVNALSETLFLRVWRKGRVWEMTFRHGDAVAPLADVGAAPVVASGPRAGQPLTGTEVTFL 194 Query: 171 PSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKR--DGKEDHFHYEGGIKAFVEY 228 PS +TFT TEF+++ L R REL+FLNSGV + D R + K YEGG++AFV+Y Sbjct: 195 PSKQTFTK-TEFDFQTLEHRFRELAFLNSGVLLVFTDARGVEPKVTELFYEGGLEAFVQY 253 Query: 229 LNKNKTPIHPNIFYFSTEK-----DGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLA 283 L+++K +H E+ + VEVALQWND + E+ CFTNNIPQRDGGTHLA Sbjct: 254 LDRSKAALHKPSIAMRGERVSDLGTTVTVEVALQWNDSYHESCLCFTNNIPQRDGGTHLA 313 Query: 284 GFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSS 343 GFRAA+TRT+N Y ++ G KK KV+ +GDD REGL V+SVKVPDPKFSSQTKDKLVSS Sbjct: 314 GFRAALTRTINKYAEESGILKKEKVALSGDDMREGLTCVLSVKVPDPKFSSQTKDKLVSS 373 Query: 344 EVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGL 403 EV+ VE + + LA + E+P DA+ +VGK+++AA AREAARRARE+TRRKGALD+A L Sbjct: 374 EVRPVVETVVADALATWFEEHPADARRIVGKVVEAAAAREAARRARELTRRKGALDMASL 433 Query: 404 PGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLS 463 PGKLADCQERDPALSEL++VEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKMLS Sbjct: 434 PGKLADCQERDPALSELFIVEGDSAGGSAKQGRSRQFQAILPLRGKILNVERARFDKMLS 493 Query: 464 SQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVE 523 S E+ TLI ALG GIGR+E++PDK RYH IIIMTDADVDG+HIRTLLLTFFYRQMP ++E Sbjct: 494 SAEIGTLIAALGTGIGREEFDPDKARYHKIIIMTDADVDGAHIRTLLLTFFYRQMPALIE 553 Query: 524 RGHVYIAQPPLYKVKKGK-QEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEK 582 RG++YIAQPPLY+VK+G +E+Y+KDD ++ Y I+ D T T +G+ L Sbjct: 554 RGYLYIAQPPLYRVKRGTAKERYLKDDRQLEDYLIAQGTDDVTF-TLGDGTTRSGDDLRA 612 Query: 583 LVSEYNATQKMINRMERR-YPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELND-- 639 LV + + + + R+ + ++++ L+ L + + LND Sbjct: 613 LVEQARVARHALTTLARKAGSREVVEQAALSGALSSRLLDNPDLARTLAEEVARRLNDLA 672 Query: 640 ---------------KEQHGSQ-----------------------WKFDVHTNAEQNLFE 661 E GS W ++ + + Sbjct: 673 VRQAAAALQASGGPAPEGDGSPGSASAAGATGTGTASTGGVPAGGWTAELIEDGPHGVGG 732 Query: 662 PIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFI-ERGERRQPVASFE 720 ++ R GV + LD + + E RR+ + E LR + + + R +R VA Sbjct: 733 YVLARRRRGVTHRHVLDVDLLKSVEARRLDGMAEALRAVYDTPGVLTHRVKRLAAVAGPA 792 Query: 721 QALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTL 780 +D ++++ R GL+IQRYKGLGEMNP+QLWETT+DP +R +L+V V A A+++F+TL Sbjct: 793 GLMDAVIEQGRAGLAIQRYKGLGEMNPDQLWETTLDPANRTLLQVKVSHADEAEEVFSTL 852 Query: 781 MGDAVEPRRAFIEENALKAANIDI 804 MGD VEPRR FI+ENALK AN+D+ Sbjct: 853 MGDLVEPRRDFIQENALKVANLDV 876 >UniRef50_A1TI33 DNA gyrase subunit B n=16 Tax=Burkholderiales RepID=A1TI33_ACIAC Length = 877 Score = 921 bits (2380), Expect = 0.0, Method: Composition-based stats. Identities = 478/845 (56%), Positives = 595/845 (70%), Gaps = 45/845 (5%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 S+ Y +I++L+GL+AVRKRPGMYIGDT DGTGLHH+VFEVVDN+IDEALAGHC +I+V Sbjct: 36 SDGYGEGAIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVV 95 Query: 62 TIHADNSVSVQDDGRGIPTGIH----PEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHG 117 TIH+DNS+SV D+GRGIPTG+ E SAAE+ +T LHAGGKF+ NSYKVSGGLHG Sbjct: 96 TIHSDNSISVVDNGRGIPTGVKMDDKHEPKRSAAEIALTELHAGGKFNQNSYKVSGGLHG 155 Query: 118 VGVSVVNALSQKLELVIQREGKIHRQIYE------------HGVPQAPLAVTGETEKTGT 165 VGVS VNALS+ L L ++R+GK+H + +GV +P+ VTGET+K GT Sbjct: 156 VGVSCVNALSKMLRLTVRRDGKVHLLEFSQGFVQNRILETVNGVEVSPMRVTGETDKRGT 215 Query: 166 MVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAF 225 V F P E F +F YEILAKRLRELSFLN+GV IRL+D+R GKED F GG+ F Sbjct: 216 EVHFLPDTEIFKENNDFHYEILAKRLRELSFLNNGVRIRLKDERTGKEDDFSGAGGVMGF 275 Query: 226 VEYLNKNKTPIHPNIFYFSTEK----------DGIGVEVALQWNDGFQENIYCFTNNIPQ 275 V+++N +K +HPN F+ + + IGVEVA+QWNDGF E++ CFTNNIPQ Sbjct: 276 VQFINASKKVLHPNAFHATGSRPAETYGGIPGTEIGVEVAMQWNDGFNESVLCFTNNIPQ 335 Query: 276 RDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQ 335 RDGGTHL G RAAMTR + Y+++ +KKAKV +GDD REGL V+SVKVP+PKFSSQ Sbjct: 336 RDGGTHLTGLRAAMTRVIGKYIEQNELAKKAKVEVSGDDMREGLCCVLSVKVPEPKFSSQ 395 Query: 336 TKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRK 395 TKDKLVSSEV++ VE + + L +YL E P DAKI+ GKI++AARAREAAR+AREMTRRK Sbjct: 396 TKDKLVSSEVRAPVEDIVAKALTDYLEERPNDAKILCGKIVEAARAREAARKAREMTRRK 455 Query: 396 GALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 455 G LD GLPGKLADCQE+DPALSE+Y+VEGDSAGGSAKQGR+RK QAILPL+GKILNVEK Sbjct: 456 GVLDGMGLPGKLADCQEKDPALSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEK 515 Query: 456 ARFDKMLSSQEVATLITALGCGIGR-----------DEYNPDKLRYHSIIIMTDADVDGS 504 AR++K+L+S E+ TLITALG GIG+ D++N DKLRYH IIIMTDADVDG+ Sbjct: 516 ARYEKLLTSNEILTLITALGTGIGKASADGTGKGGADDFNVDKLRYHRIIIMTDADVDGA 575 Query: 505 HIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGA 564 HIRTLLLTFFYRQMPE+VERGH+YIAQPPLYKVK GK+E Y+KD A+D + + +AL A Sbjct: 576 HIRTLLLTFFYRQMPELVERGHIYIAQPPLYKVKNGKEELYLKDGPALDTFLLRVALRDA 635 Query: 565 TLHTNA-SAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDE 623 ++ T A L GE L L ++ + +I R+ + L+ + L + D Sbjct: 636 SVTTGGEQARTLDGETLSTLAQKHQVAEAVIERLSAFMDREALRAIADGVALNLDTVEDA 695 Query: 624 QTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFIT 683 + + A + EL +A + + R HG + +F+ Sbjct: 696 EASAVALQAKLRELTTTGVPAE---VAGEFDARTDKPVLRISRRHHGNIKSSIITQDFVH 752 Query: 684 GGEYRRICTLGEKLRGLLEEDAFIERGE----RRQPVASFEQALDWLVKESRRGLSIQRY 739 G +Y + RGLL E A + RGE R + V+ F QA+ WL+KE+ R S QRY Sbjct: 753 GADYAALAEAAHTFRGLLGEGAKVLRGEGERQREEKVSDFRQAMAWLIKEAERTTSRQRY 812 Query: 740 KGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKA 799 KGLGEMNPEQLWETTMDPE RR+LRV ++DAI AD++FT LMGD VEPRR FIE NAL+A Sbjct: 813 KGLGEMNPEQLWETTMDPEVRRLLRVQIEDAIEADRVFTMLMGDEVEPRRDFIETNALRA 872 Query: 800 ANIDI 804 NID+ Sbjct: 873 GNIDV 877 >UniRef50_D0LFL2 DNA gyrase subunit B n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LFL2_HALO1 Length = 821 Score = 918 bits (2372), Expect = 0.0, Method: Composition-based stats. Identities = 415/813 (51%), Positives = 560/813 (68%), Gaps = 13/813 (1%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 + YD+ SI VLKGL+AVRKRPGMYIGDTDDG+GLHHMV EVVDNA+DEALAG+C + + Sbjct: 12 ATEYDADSITVLKGLEAVRKRPGMYIGDTDDGSGLHHMVHEVVDNAVDEALAGYCDRVDI 71 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 TIH+DNS++V+D+GRGIP +H +EG AAE++MTVLHAGGKF+ NSYKVSGGLHGVGVS Sbjct: 72 TIHSDNSITVEDNGRGIPVAVHKDEGRPAAELVMTVLHAGGKFNQNSYKVSGGLHGVGVS 131 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTE 181 VVNALS+ L+L I+REGK++ Q Y G+P + L TG T++ GT + F P E F TE Sbjct: 132 VVNALSRTLKLEIRREGKVYFQEYRQGIPVSDLRSTGTTDRRGTKITFLPDPEVFKQ-TE 190 Query: 182 FEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIF 241 F + L++R RELS+LNSG++I + D+R+ ++ F YEGG+ +FV LN NK P+ + Sbjct: 191 FSFGALSQRFRELSYLNSGLTIAITDERESQQQVFCYEGGMASFVADLNANKNPV-TEVV 249 Query: 242 YFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEG 301 F+ E++G+ V++A+QWND + E I CFTN I +DGGTHL GFR +TRT+NAY + Sbjct: 250 AFTDEREGVTVDIAMQWNDSYAEQINCFTNTIKNKDGGTHLTGFRQGLTRTVNAYAAENK 309 Query: 302 YSKKAK-VSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEY 360 K+ K + +G+D REGL+AV+SVKV DPKFS+Q KDKLVSSEV AV +N+ L + Sbjct: 310 LLKELKGNNLSGEDLREGLVAVISVKVADPKFSNQPKDKLVSSEVAGAVAAVVNDKLQSF 369 Query: 361 LLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSEL 420 NP DA+ ++ K + AARAR+AAR+AREM +RKGAL+ LPGKLADCQERDP+ EL Sbjct: 370 FEHNPKDARSIIQKAVVAARARDAARKAREMVQRKGALEYTSLPGKLADCQERDPSKCEL 429 Query: 421 YLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR 480 ++VEG+SAGGSAKQGR+R+ QAILPLKGKILNVE+AR DKMLSSQE+ TLITALGCGIG Sbjct: 430 FIVEGESAGGSAKQGRDREFQAILPLKGKILNVERARMDKMLSSQEIVTLITALGCGIGP 489 Query: 481 DEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKG 540 E + +LRYH I+IMTDADVDGSHIRTLLLTFF+RQ PEI+E H+YIAQPPL+KVK+G Sbjct: 490 -EKDMGRLRYHRIVIMTDADVDGSHIRTLLLTFFFRQYPEIIENNHLYIAQPPLFKVKRG 548 Query: 541 KQEQYIKDDEAMDQYQISIALDGATLHTNA--------SAPALAGEALEKLVSEYNATQK 592 K E Y+K++ +++ Y + + + + + P + GEAL + + N ++ Sbjct: 549 KSETYLKNEHSLEDYVLDLVSKELVVRGTSGDGAGGDDAGPEITGEALHAFIKDTNEYRR 608 Query: 593 MINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVH 652 ++++R + I TE DL+ E+ V R + + L + + +F++ Sbjct: 609 HYTQLDKRGDSRLFASFIEGGEFTEQDLASEEGVERVRAGMRAYLEAHHKDLADLEFELV 668 Query: 653 TNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEED-AFIERGE 711 + E +++ + V D + + + E I L + L L + +GE Sbjct: 669 RDEEHSVYALRAPLEGGNVRRDTIIGRDLLQTREVEEIARLTKSLDATLRGPYVLVHKGE 728 Query: 712 RRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI 771 V + ++ + + R+GLSIQRYKGLGEMN +QLW+TTM P+ R +L+V + Sbjct: 729 DIGTVTTLDELAEAVEAVGRKGLSIQRYKGLGEMNSDQLWDTTMCPDQRTLLQVRIDARE 788 Query: 772 AADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 A +F+ LMGD VEPRR FIE NAL N+DI Sbjct: 789 EAADVFSVLMGDLVEPRRHFIENNALNVRNLDI 821 >UniRef50_B8GXQ0 DNA gyrase subunit B n=17 Tax=cellular organisms RepID=GYRB_CAUCN Length = 805 Score = 910 bits (2353), Expect = 0.0, Method: Composition-based stats. Identities = 446/816 (54%), Positives = 558/816 (68%), Gaps = 30/816 (3%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 + Y + SIKVLKGLDAVRKRPGMYIGDTDDG+GLHHMV+EVVDNAIDEALAGH ++ V Sbjct: 7 AAQYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHATKVQV 66 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 ++AD SV+V DDGRGIP +H EGVSAAEVIMT LHAGGKFD NSYKVSGGLHGVGVS Sbjct: 67 ILNADGSVTVTDDGRGIPVDMHEGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVS 126 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-----------TGTMVRFW 170 VVNALS LEL+I R GK+H+ +E G L VTG++ TGT V F+ Sbjct: 127 VVNALSDWLELLIHRNGKVHQMRFERGDAVTSLKVTGDSPVRTEGPKAGETLTGTEVTFF 186 Query: 171 PSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRD--GKEDHFHYEGGIKAFVEY 228 PS +TF EF+ + L RLREL+FLNSGV+I +D RD E+ YEGGI+AFV + Sbjct: 187 PSKDTFA-FIEFDRKTLEHRLRELAFLNSGVTIWFKDHRDVEPWEEKLFYEGGIEAFVRH 245 Query: 229 LNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAA 288 L+K KTP+ KD + +++AL WND + E + CFTNNIPQRDGGTHL+ FRAA Sbjct: 246 LDKAKTPLLKAPIAVKGVKDKVEIDLALWWNDSYHEQMLCFTNNIPQRDGGTHLSAFRAA 305 Query: 289 MTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSA 348 +TR + +Y + G KK KVS G+D+REGL V+SVKVPDPKFSSQTKDKLVSSEV+ A Sbjct: 306 LTRIITSYAESSGILKKEKVSLGGEDSREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPA 365 Query: 349 VEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLA 408 VE ++E L+ + E+P +AK +V KI +AA AREAAR+ARE+TRRK ALD+ LPGKLA Sbjct: 366 VEGLVSEGLSTWFEEHPNEAKAIVTKIAEAAAAREAARKARELTRRKSALDITSLPGKLA 425 Query: 409 DCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 468 DC ERDPA SE+++VEGDSAGGSAKQ RNR NQA+LPL+GKILNVE+ARFDKMLSS ++ Sbjct: 426 DCSERDPAKSEIFIVEGDSAGGSAKQARNRDNQAVLPLRGKILNVERARFDKMLSSDQIG 485 Query: 469 TLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVY 528 TLITALG GIGRD++NPDK+RYH I++MTDADVDG+HIRTLLLTFFYRQMPE++ERG++Y Sbjct: 486 TLITALGAGIGRDDFNPDKVRYHKIVLMTDADVDGAHIRTLLLTFFYRQMPELIERGYIY 545 Query: 529 IAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYN 588 IAQPPLYK KGK +Y+KDD MD + + +DGA L AS + G+ L LV Sbjct: 546 IAQPPLYKASKGKSSRYLKDDAEMDAFLVDEGVDGAELDL-ASGERMTGQDLLALVQTCR 604 Query: 589 ATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWK 648 + + I+R+ R P +++ L E+ L +E D G + Sbjct: 605 SAKANIDRLAARAPATAIEQAALSGLLGESP---NAAAAATRLDLYAEEGDGPWSGER-- 659 Query: 649 FDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIE 708 + GV LD + + RR+ KL + A Sbjct: 660 ---------GDTGFVFSRVRRGVSERVVLDDVLLHAADARRLAERAVKLTEIFSGRAIFR 710 Query: 709 RGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVK 768 R ++ V ++ ++ R+GL+IQRYKGLGEMNP+QLWETT+D E+R +L+V V Sbjct: 711 RKDKSTTVRGPLDLVNAVLDAGRKGLTIQRYKGLGEMNPDQLWETTLDAEARTLLQVRVN 770 Query: 769 DAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 A AD +F+ LMGD VEPRR FI+ENAL A +D+ Sbjct: 771 HADDADDMFSRLMGDLVEPRREFIQENALDAE-VDV 805 >UniRef50_A3EQC0 DNA gyrase subunit B n=7 Tax=Bacteria RepID=A3EQC0_9BACT Length = 818 Score = 910 bits (2353), Expect = 0.0, Method: Composition-based stats. Identities = 394/814 (48%), Positives = 539/814 (66%), Gaps = 16/814 (1%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 Y + I+VL+GL+AVR RPGMYIG T GLHH+V+E+VDN++DEALAGHC EI +T Sbjct: 9 EEYTAEHIRVLEGLEAVRVRPGMYIGSTGID-GLHHLVYELVDNSVDEALAGHCSEIHIT 67 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 IH D SV+V D+GRGIPTG+H E+ SAAEV++TVLHAGGKF++N YKVSGGLHGVGVSV Sbjct: 68 IHPDRSVTVADNGRGIPTGMHAEQKRSAAEVVLTVLHAGGKFNNNLYKVSGGLHGVGVSV 127 Query: 123 VNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEF 182 VNALS+ L L I + G IHRQ Y G P APLAV GET + GT++RFWP + +F Sbjct: 128 VNALSETLFLEIHQNGLIHRQTYHKGTPDAPLAVFGETTQRGTIIRFWPDMTIM-ETDQF 186 Query: 183 EYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFY 242 ++ LA R REL+FLN ++I L+D+ +E+ FH+EGG+++FV +LN+NK +H +F+ Sbjct: 187 SFDTLAHRFRELAFLNPVLTIHLKDEETLREETFHFEGGVQSFVSFLNENKKTLHDVLFF 246 Query: 243 FSTEKDGIGVEVALQWNDG-FQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEG 301 T +DG EVA Q+ + E + F NNI R+GGTH+ GFR A+T+T+N ++ ++ Sbjct: 247 RKTLEDGSQFEVAFQYQESTENETVLGFANNIHTREGGTHVRGFRTAITKTINRFIREKQ 306 Query: 302 YSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYL 361 +K +V G+D REGL ++SV++P P+F QTK KL SS V A+E ++E L E Sbjct: 307 LNKGEEV--RGEDVREGLTGIISVRIPGPQFEGQTKAKLGSSWVAGAMESFLSEALQEKF 364 Query: 362 LENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELY 421 E+P AK + K + A+AREAAR+A+++ +RK L+ + LPGKLADCQE DPA SELY Sbjct: 365 EEDPLTAKKIAEKAVLTAQAREAARKAKDLAKRKNVLEGSNLPGKLADCQESDPAKSELY 424 Query: 422 LVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR-FDKMLSSQEVATLITALGCGIGR 480 +VEGDSAGGSAKQGR+R+ QAILPLKGKILNVEK+R +K +++ EV LITA+GCG+G Sbjct: 425 IVEGDSAGGSAKQGRDRRFQAILPLKGKILNVEKSRGIEKFITNDEVRALITAVGCGLGE 484 Query: 481 DEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKG 540 +E++ KLRYH IIIMTDADVDG+HIRTLLLTFF+R M +++ VYIAQPPLYKV G Sbjct: 485 EEFSEKKLRYHKIIIMTDADVDGAHIRTLLLTFFFRHMNPLIDGQFVYIAQPPLYKVSYG 544 Query: 541 KQEQYIKDDEAMDQYQISIALDGATLHTNASAPAL-AGEALEKLVSEYNATQKMINRMER 599 +QE+Y+ +DEA+ Y + +A + + L EA+ KL+ + +++ +R Sbjct: 545 RQERYLLNDEALQAYILELACADWMFYDEQAGHWLAREEAVAKLLVLVHFEEQVRAHAQR 604 Query: 600 RYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELN---DKEQHGSQWKFDV---HT 653 + +L+ + P L +E+ R V+ L E D + Q + D + Sbjct: 605 FGNEMLLRLIGMFPETGIELLKNEEAAQRLVSFLTGEYPGWVDGGRLAGQVERDPGMSES 664 Query: 654 NAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERG--- 710 + E+ F + G ++ LDH + + + GLL F+ R Sbjct: 665 HPEEEWFRIRFFTESLGYESRLVLDHYLLAQLLAGKRSLKLLRQSGLLFPGGFVLRRGAE 724 Query: 711 ERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDA 770 S + L +L R+ LSIQRYKGLGEMNPEQLWETTMDP R +L+V++ D Sbjct: 725 GEEIRFRSPRELLSFLESPVRQKLSIQRYKGLGEMNPEQLWETTMDPSRRTLLKVSIPDY 784 Query: 771 IAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 + AD++FTTLMG+ V PRR FIE++AL AN+DI Sbjct: 785 VEADRVFTTLMGEQVAPRREFIEKHALDVANLDI 818 >UniRef50_O67137 DNA gyrase subunit B n=13 Tax=cellular organisms RepID=GYRB_AQUAE Length = 792 Score = 906 bits (2341), Expect = 0.0, Method: Composition-based stats. Identities = 365/802 (45%), Positives = 513/802 (63%), Gaps = 19/802 (2%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 Y + +IK + GL+ VR RP MYIGD + GLHH+++E++DNA+DEA+AG+ + I VT Sbjct: 10 QEYTAEAIKAVSGLEHVRLRPAMYIGDIGE-RGLHHLIWEILDNAVDEAVAGYARNISVT 68 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 IH DNSV+V+DDGRGIP IHPE G A E++ T+L AGGKF+ Y SGGLHGVG SV Sbjct: 69 IHRDNSVTVEDDGRGIPVDIHPETGKPAVEMVFTMLGAGGKFEKKVYTYSGGLHGVGASV 128 Query: 123 VNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEF 182 VNALS+ L + + R+GKI+R ++ G PL V GET+K GT V F P E F TE Sbjct: 129 VNALSEWLIVEVYRDGKIYRMAFKRGEVVEPLHVVGETKKRGTKVSFKPDPEIF-ETTEI 187 Query: 183 EYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFY 242 +++I+ KR+REL++LN V L D+R GK + ++ GI+ V+YLN+ K P+ +I Sbjct: 188 KFDIVEKRVRELAYLNPEVKFELTDERLGKHLIYKFDRGIEELVKYLNEGKEPLFKDIIR 247 Query: 243 FSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGY 302 EK+G+ V++A Q+ ++E I F NNI +GGTH+ GFR+ +++ + Sbjct: 248 IQGEKEGVIVDIAFQYVKDYKERIESFVNNIKTVEGGTHVTGFRSGLSKAVIRMAQGLKL 307 Query: 303 SKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLL 362 +K+ K S TG+D REGL AVV+ KVP+P+F QTK KL + VK VE + L Y Sbjct: 308 AKELKKSFTGEDVREGLTAVVACKVPNPQFEGQTKTKLGNQNVKQIVESITYDFLTSYFE 367 Query: 363 ENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYL 422 + K +V K I+AA AREAA++A+E+ RRK L+ LPGKLADC E DP+ E++L Sbjct: 368 KKRDVLKAIVEKAIEAALAREAAKKAKELVRRKSPLEEGVLPGKLADCSETDPSKCEIFL 427 Query: 423 VEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDE 482 VEGDSAGGSAKQ R+R+ QAILPL+GKI+NVEKAR DK+LS+ E+ +++ALGCGIG D Sbjct: 428 VEGDSAGGSAKQARDRRYQAILPLRGKIINVEKARIDKVLSNDEIKAIVSALGCGIGED- 486 Query: 483 YNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQ 542 + KLRYH II+MTDADVDGSHIRTLLLTFFYR MP++VE G+VYIA+PPLY+VKKGK+ Sbjct: 487 LDLKKLRYHKIILMTDADVDGSHIRTLLLTFFYRFMPKLVEEGYVYIAEPPLYRVKKGKK 546 Query: 543 EQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYP 602 E YIKDD+ + + ++ + L +A GE L +L+ + + + + Sbjct: 547 EIYIKDDKEFEHFLLNEIREKGRL-VDAREKEFKGEELVRLLIDLKDYEDAYRALVKSKG 605 Query: 603 KAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEP 662 + ++ L+ + E DL + V + + EL D ++ D N + ++ Sbjct: 606 ENLVNFLLTH-RVREEDLRNPARVKEITHLMEEELGD-------YRVDTKYNELEGAYDI 657 Query: 663 IVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQA 722 I G T +D F++ YR + E + L F E ++ + S + Sbjct: 658 IFYDDKLGTKT--IIDVNFLSSLSYREVL---EGIHLHLPVQVFFE--NKKVEINSLGEI 710 Query: 723 LDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMG 782 D + +R G+ +QRYKGLGEMNPEQLWETTM+P++RR+ +V ++DA AD++FT LMG Sbjct: 711 YDKFMDFARSGMEVQRYKGLGEMNPEQLWETTMNPKTRRLKKVKIEDAAEADRIFTILMG 770 Query: 783 DAVEPRRAFIEENALKAANIDI 804 + VEPRR FIE A + ++D+ Sbjct: 771 EQVEPRREFIEAYAKEVKHLDV 792 >UniRef50_C1DUC4 DNA gyrase subunit B n=5 Tax=Bacteria RepID=C1DUC4_SULAA Length = 809 Score = 901 bits (2329), Expect = 0.0, Method: Composition-based stats. Identities = 371/814 (45%), Positives = 512/814 (62%), Gaps = 27/814 (3%) Query: 4 SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTI 63 Y + +I+ + GLD VR RP MYIGD + GLHH+V+E++DNA+DEA+AG+ K I V I Sbjct: 10 EYSAEAIQAVTGLDHVRARPAMYIGDIGE-RGLHHLVWEILDNAVDEAMAGYAKNITVII 68 Query: 64 HADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVV 123 H D SV+V+DDGRGIP IHPE + A E++ T+L AGGKF +Y+ SGGLHGVG SVV Sbjct: 69 HQDGSVTVEDDGRGIPVDIHPEFKIPAVEMVFTILGAGGKFSKKAYQYSGGLHGVGASVV 128 Query: 124 NALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFE 183 NALS L + + R GKI+RQ Y +G P PL V G+T K GT V F P F T + Sbjct: 129 NALSSWLVVEVYRNGKIYRQEYSYGKPVYPLKVVGDTTKRGTKVTFKPDDSIFETTT-IK 187 Query: 184 YEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYF 243 ++I+ KR+REL+FLN GV + D+R ++ F++E GI FV LN+ K P+ + Y Sbjct: 188 FDIIQKRVRELAFLNPGVRFVVIDERKDIKEEFYFENGIVDFVRVLNQAKEPLFDEVIYV 247 Query: 244 STEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYS 303 EKDG+ VEVA Q+ + E I F NNI +GGTH++GFRAA+TR++N + Sbjct: 248 KGEKDGVLVEVAFQYTKSYNEVIESFVNNIKTVEGGTHVSGFRAALTRSMNKTLSGMKLP 307 Query: 304 KKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLE 363 K+ K +GDD REGL AV+SVKVP+P+F QTK KL + +VK VE + + L EY + Sbjct: 308 KELKSGVSGDDLREGLTAVISVKVPEPQFEGQTKTKLGNQDVKRIVESVVGDYLLEYFEK 367 Query: 364 NPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLV 423 N A + K I+AA AREAAR+A+E++RRK L+ + LPGKLADC E DP L EL++V Sbjct: 368 NKDIALKIAEKAIEAAIAREAARKAKEISRRKSFLEDSSLPGKLADCSESDPQLCELFIV 427 Query: 424 EGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIG---- 479 EG+SAGGSAKQGR+R+ QAILPLKGKILNVEKAR DK+LS++E+ ++ A+G GIG Sbjct: 428 EGESAGGSAKQGRDRRTQAILPLKGKILNVEKARIDKILSNEEIRAIVNAIGTGIGLPIK 487 Query: 480 --------RDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQ 531 + ++ KLRYH II+M DADVDGSHI TLLLT FYR P+I+E GH+YIAQ Sbjct: 488 SEDEEKKEDEGFDLSKLRYHKIILMADADVDGSHITTLLLTLFYRFFPQIIENGHLYIAQ 547 Query: 532 PPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQ 591 PPLYK+KKG+ E Y+KDDE + + I A D + + L+ + + Sbjct: 548 PPLYKLKKGRSEIYVKDDEELSKIVIDFATDEIAIE----GKNFSKSQLKDIAKLSKEYK 603 Query: 592 KMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDV 651 + + +R K ++ L+ LTE D+ ++ V V L +L E + Sbjct: 604 NLKESLYKRKDKVVIDTLL-SLNLTEDDIRNKGKVKEVVEFLRQKLPSYEIY-------Y 655 Query: 652 HTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEE-DAFIERG 710 N E++ +E + +D +F++ Y ++ + L+ +L E I Sbjct: 656 KFNPEESDYEIFIERVERFSKVVNKVDIDFLSSYAYLKVKEIENHLKSMLGELPVEISYK 715 Query: 711 ERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDA 770 ++ V + D + + G +QRYKGLGEMNPEQLWETTM+P++RR+L+VT++DA Sbjct: 716 QKSIKVEDLDDLYDVIFEAGMSGCEVQRYKGLGEMNPEQLWETTMNPKTRRLLQVTIEDA 775 Query: 771 IAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 AD++F+ LMG+ VEPRR FI + A + N+DI Sbjct: 776 ALADEVFSILMGEKVEPRREFIMKYAKEVRNLDI 809 >UniRef50_Q9Z8R3 DNA gyrase subunit B n=80 Tax=cellular organisms RepID=GYRB_CHLPN Length = 805 Score = 896 bits (2315), Expect = 0.0, Method: Composition-based stats. Identities = 390/828 (47%), Positives = 522/828 (63%), Gaps = 54/828 (6%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 +YD+S+I VL+GL AVR+RPGMYIGDT TGLHH+V+EVVDN+IDEA+AG+C I V Sbjct: 6 KNYDASAITVLEGLQAVRERPGMYIGDTG-ITGLHHLVYEVVDNSIDEAMAGYCSRIDVR 64 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEG------VSAAEVIMTVLHAGGKFDDNSYKVSGGLH 116 I D + + D+GRGIP +H E VSA EV++TVLHAGGKFD +SYKVSGGLH Sbjct: 65 ILEDGGIVIVDNGRGIPIEVHERESAKQGREVSALEVVLTVLHAGGKFDKDSYKVSGGLH 124 Query: 117 GVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETF 176 GVGVS VNALS+KL + ++ K ++ + G+P PL +++ GT + F+P + F Sbjct: 125 GVGVSCVNALSEKLVATVFKDKKCYQMEFSRGIPVTPLQYVSVSDRQGTEIVFYPDPKIF 184 Query: 177 TNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKED--HFHYEGGIKAFVEYLNKNKT 234 + T F+ IL KRLREL+FLN G++I D RD D F YEGGI++FV YLN+NK Sbjct: 185 STCT-FDRSILMKRLRELAFLNRGITIVFEDDRDVSFDKVTFFYEGGIQSFVSYLNQNKE 243 Query: 235 PIHPNIFYFSTEKDG----IGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMT 290 + Y + G I E ALQWN G+ E +Y + NNIP R GGTHL GF A+T Sbjct: 244 SLFSEPIYICGTRVGDDGEIEFEAALQWNSGYSELVYSYANNIPTRQGGTHLTGFSTALT 303 Query: 291 RTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVE 350 R +N Y+ +K K++ TG+D REGL AV+SVKVP+P+F QTK KL +S+V S + Sbjct: 304 RVINTYIKAHNLAKNNKLALTGEDIREGLTAVISVKVPNPQFEGQTKQKLGNSDVSSVAQ 363 Query: 351 QQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADC 410 Q + E L + ENP A+++V K+ AA+AREAA++ARE+T RK ALD A LPGKL DC Sbjct: 364 QVVGEALTIFFEENPQIARMIVDKVFVAAQAREAAKKARELTLRKSALDSARLPGKLIDC 423 Query: 411 QERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATL 470 E+DP E+Y+VEGDSAGGSAKQGR+R+ QAILP++GKILNVEKAR K+ +QE+ T+ Sbjct: 424 LEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKIFQNQEIGTI 483 Query: 471 ITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIA 530 I ALGCGIG D +N KLRY IIIMTDADVDGSHIRTLLLTFFYR M ++E VYIA Sbjct: 484 IAALGCGIGADNFNLSKLRYRRIIIMTDADVDGSHIRTLLLTFFYRHMTALIENECVYIA 543 Query: 531 QPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNAT 590 QPPLYKV K K +YI ++ MD Y + + + +++ ++ L GEALE ++ Sbjct: 544 QPPLYKVSKKKDFRYILSEKEMDSYLLMLGTNESSILFKSTERELRGEALESFINVILDV 603 Query: 591 QKMINRMERRYP-----KAMLKELIYQPTLTEADLSDEQTVTRWV-------NALVSELN 638 + IN +E++ M KE I P A + Q R++ AL E Sbjct: 604 ESFINTLEKKAIPFSEFLEMYKEGIGYPLYYLAPATGMQG-GRYLYSDEEKEEALAQEET 662 Query: 639 DKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLR 698 K + +K V + + L E + + ++ + P +E + G E C Sbjct: 663 HKFKIIELYKVAVFVDIQNQLKEYGLDISSYLI----PQKNEIVIGNEDSPSC------- 711 Query: 699 GLLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPE 758 + E+ +++L R+G+ IQRYKGLGEMN +QLW+TTM+PE Sbjct: 712 --------------NYSCYTLEEVINYLKNLGRKGIEIQRYKGLGEMNADQLWDTTMNPE 757 Query: 759 SRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENAL--KAANIDI 804 R ++ V++KDA+ AD +FT LMG+ V PRR FIE +AL + N+DI Sbjct: 758 QRTLIHVSLKDAVEADHIFTMLMGEEVPPRREFIESHALSIRINNLDI 805 >UniRef50_Q1RHT8 DNA gyrase subunit B n=702 Tax=Proteobacteria RepID=GYRB_RICBR Length = 808 Score = 888 bits (2294), Expect = 0.0, Method: Composition-based stats. Identities = 418/806 (51%), Positives = 571/806 (70%), Gaps = 12/806 (1%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 +SY + SIKVLKGL+AVRKRPGMYIGD DG+GLHHM++EVVDNAIDEALAG+C + V Sbjct: 11 SSYGADSIKVLKGLEAVRKRPGMYIGDVGDGSGLHHMIYEVVDNAIDEALAGYCDLVRVV 70 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 ++ + SV+V D+GRGIP IH EEG+SAAEVIMT LHAGGKFD NSYKVSGGLHGVGVSV Sbjct: 71 LNKNGSVTVSDNGRGIPVEIHEEEGISAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSV 130 Query: 123 VNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGET-EKTGTMVRFWPSLETFTNVTE 181 VNALS LEL I R H + +G+ +APLAV E +K GT V F+PS+ETFTN+ E Sbjct: 131 VNALSDWLELRIWRNNTEHLIRFNNGITEAPLAVVKENVDKKGTEVTFFPSVETFTNI-E 189 Query: 182 FEYEILAKRLRELSFLNSGVSIRLRDKR--DGKEDHFHYEGGIKAFVEYLNKNKTPIHPN 239 F++ I+ RLREL+FLNSGV I L D R + KE F+Y GGI+A+V+YL++ K +H Sbjct: 190 FDFSIIEHRLRELAFLNSGVKILLTDNRFEEVKEVEFYYTGGIEAYVKYLDRAKHAVHSC 249 Query: 240 IFY-FSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 I + GI +E+A+ WND + ENI CFTNNI QRDGGTHL+ F++ +TR + AY++ Sbjct: 250 IVVNADNTESGISLELAMHWNDSYHENILCFTNNIRQRDGGTHLSAFKSGLTRVITAYLE 309 Query: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 G +KKAK + +G+D REG+ V+SVKVPDPKFSSQTKDKLVSSEV+ VE + + Sbjct: 310 NTGLNKKAKNAFSGEDTREGICCVLSVKVPDPKFSSQTKDKLVSSEVRPIVENAVYTKVL 369 Query: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 E+ E+P DAK+++ KI++AA AREAAR+ARE+TRRK L+++ LPGKLADC +DPA+S Sbjct: 370 EWFEEHPADAKLIINKIMEAANAREAARKARELTRRKSVLEVSNLPGKLADCHAKDPAVS 429 Query: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 EL++VEGDSAGG+AKQGR+ K QAILPL+GKILNVE+ARFDKML S ++ TLITALG G+ Sbjct: 430 ELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERARFDKMLGSDQIGTLITALGTGV 489 Query: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 E++ +KLRYH +IIMTDADVDGSHIRTLLLTFFYR MPE++ +G++YIAQPPLYKVK Sbjct: 490 DNREFSLEKLRYHKVIIMTDADVDGSHIRTLLLTFFYRHMPELINKGYLYIAQPPLYKVK 549 Query: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598 KG E Y+K+++A+ Y + A+ ATL T + L E LE+L+S+ +++ Sbjct: 550 KGASELYLKNEQALQDYLVKSAISDATL-TLDNKEQLTNENLEELMSKVIKFNSLLDHAS 608 Query: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658 +++ +++ + ++ L + D ++ +R AL + LN EQ + ++V + + Sbjct: 609 KKFNRSITE-ILAINDLLNNKIFDNESDSRLKKAL-NALNSLEQSPDKTDWEVLKHENKI 666 Query: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718 F R G+ L E + E+ I L + + + + + + + Sbjct: 667 EFFRFSR----GLKERKILLREQLESFEFINISKLALTIFDVFNKQLKLVVKNQEFDILT 722 Query: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 L+ +++ ++G+S+QR+KGLGEMN +QLW+TT+DP+ R +++V V + A+ +F+ Sbjct: 723 PSILLNTIIECGKKGISVQRFKGLGEMNSDQLWDTTLDPKKRTLMQVRVAEVDEAEGIFS 782 Query: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 TLMGD VEPRR FI+ NAL N+D+ Sbjct: 783 TLMGDVVEPRRQFIQSNALNVVNLDV 808 >UniRef50_UPI0001C311B1 DNA gyrase, B subunit n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C311B1 Length = 808 Score = 887 bits (2293), Expect = 0.0, Method: Composition-based stats. Identities = 378/810 (46%), Positives = 535/810 (66%), Gaps = 22/810 (2%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 S SYD+ I VL+GL+AVRKRPGMYIG T GLHH+V+EVVDN++DEALAGH + V Sbjct: 14 SPSYDAQDITVLEGLEAVRKRPGMYIGSTG-IRGLHHLVYEVVDNSVDEALAGHASAVDV 72 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNS-YKVSGGLHGVGV 120 TIH DNS++V D+GRGIP + +EG A EV++TVLHAGGKF D YKVSGGLHGVGV Sbjct: 73 TIHPDNSITVVDNGRGIPVAMMEKEGKPAVEVVLTVLHAGGKFGDGGGYKVSGGLHGVGV 132 Query: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVT 180 SVVNALS++L + I R+G Q Y G PQ L T +TGT + F P E ++ Sbjct: 133 SVVNALSEQLRVEIFRDGFAWSQDYVRGAPQGQLERGEATSETGTTITFLPDDEIMESL- 191 Query: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKED-HFHYEGGIKAFVEYLNKNKTPIHPN 239 +F++ L +RLRE +FL G+ I L D+R + F Y+GGI+ FV YLN+NK P+ Sbjct: 192 DFDFTTLEERLRETAFLTRGLRISLTDERGERRHVEFQYDGGIQDFVAYLNENKDPVQRK 251 Query: 240 IFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDK 299 I YFS+E D VEVA+QWN +QE+++ F NNI +GG+HL+GFR+A+TRT+N Y + Sbjct: 252 IVYFSSESDEGAVEVAMQWNSSYQESVFSFANNINTHEGGSHLSGFRSALTRTINKYARE 311 Query: 300 EGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAE 359 +G+ K+ + G+D REGL AV+S K+ +P+F QTK KL + ++ E +N+ L E Sbjct: 312 KGFLKERDANLAGEDVREGLTAVISAKLAEPQFEGQTKTKLGNPGMQGFTESIVNKGLDE 371 Query: 360 YLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSE 419 +L ENP DA+ V+ K + AA+AR AAR+AR++TRRK AL+ + LPGKLADC +DPALSE Sbjct: 372 FLEENPQDARSVILKAVQAAQARSAARKARDLTRRKSALENSRLPGKLADCSVKDPALSE 431 Query: 420 LYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIG 479 +++VEGDSAGGSAKQGR+R QAILPL+GKILNVE+AR DK+L + EV LITA+G G+ Sbjct: 432 IFIVEGDSAGGSAKQGRDRSTQAILPLRGKILNVERARIDKVLGNNEVQALITAIGTGV- 490 Query: 480 RDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKK 539 RD+++ +K RYH II+MTDADVDG+HIRTL+LT +R+M +++ G +YIA+PPLYK+K+ Sbjct: 491 RDDFDLEKARYHKIILMTDADVDGAHIRTLVLTLLFREMMPLIDAGFIYIAKPPLYKLKQ 550 Query: 540 GKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEA----LEKLVSEYNATQKMIN 595 GK E+YI+ D +++ +S L+ ++ A EA +L+ +Y + Sbjct: 551 GKNERYIEKDSELEEMLLSDKLERFSIFDRTGAETRLTEARWKRFTRLLKQYGGWASALR 610 Query: 596 RMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNA 655 + + + +++ + EA+++DE + R L E G+ + ++ Sbjct: 611 ALS----SHDVVDFLHESGILEANVTDEGALARL-------LRQPEADGAAFSVELVGED 659 Query: 656 EQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAF-IERGERRQ 714 E L + +T T + + + EYR++ + ++L + F I G+ R+ Sbjct: 660 EVELTVRSIERKTGHARTRH-VRRAMLQANEYRQLARVHDQLVQAVGTPPFDIRLGDHRE 718 Query: 715 PVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAAD 774 SF++ ++ + RG+ I R+KGLGEMN EQL ETTMDP +R + RVT++DA AA+ Sbjct: 719 TAVSFDELRSRVMDMAGRGVEINRFKGLGEMNAEQLRETTMDPATRTLARVTMEDAAAAE 778 Query: 775 QLFTTLMGDAVEPRRAFIEENALKAANIDI 804 ++F+ LMGD VEPRR FIEENA N+D+ Sbjct: 779 RVFSMLMGDQVEPRRNFIEENASLVTNLDV 808 >UniRef50_Q2GD49 DNA gyrase subunit B n=9 Tax=cellular organisms RepID=Q2GD49_NEOSM Length = 783 Score = 881 bits (2276), Expect = 0.0, Method: Composition-based stats. Identities = 415/818 (50%), Positives = 547/818 (66%), Gaps = 49/818 (5%) Query: 1 MSNS-YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEI 59 MSN+ Y + SIKVLKGL+AVRKRPGMYIGDTDDG+GLH MV+EVVDN++DE+LAG+C I Sbjct: 1 MSNTDYTADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHQMVYEVVDNSVDESLAGYCTAI 60 Query: 60 IVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 119 V I D S+SV+D+GRG+PT +H EGVSAAEVIMT LHAGGKFD +SYKVSGGLHGVG Sbjct: 61 EVVIDVDGSISVEDNGRGMPTDMHG-EGVSAAEVIMTQLHAGGKFDQSSYKVSGGLHGVG 119 Query: 120 VSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGET-EKTGTMVRFWPSLETFTN 178 VSVVNALS L+L I R+GK+H +E+G L+VTGE +KTGT+V F PS TF N Sbjct: 120 VSVVNALSDWLKLTIYRDGKVHFAEFENGETVRSLSVTGECGDKTGTLVHFLPSRSTFKN 179 Query: 179 VTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK---EDHFHYEGGIKAFVEYLNKNKTP 235 TE + L R RELSFLN G+ I L D R G + F GG + FV YL+++K P Sbjct: 180 TTEVSFSTLENRFRELSFLNPGLRISLLDMRKGSSTGKVVFFSSGGTEEFVAYLDRSKQP 239 Query: 236 IHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNA 295 IH D I ++V++QWND + EN+ CFTNNI Q+DGGTHLA R+AMTR ++ Sbjct: 240 IHSTPIRVVGGVDSIAIDVSMQWNDSYYENVLCFTNNIKQKDGGTHLAALRSAMTRVMHN 299 Query: 296 YMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNE 355 Y+ KE KK KV +G+D REGL A++SVK+PDPKFSSQTK+KL+SSEVK +E+ +++ Sbjct: 300 YIVKENLIKKDKVVVSGEDVREGLSAILSVKLPDPKFSSQTKEKLISSEVKPVIEKIVSD 359 Query: 356 LLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDP 415 LA +L ENP+ A+++ K++++A AREAA++AR++TRRKG L++ LPGKLADCQE+ P Sbjct: 360 ALASWLEENPSSARVIARKVVESALAREAAKKARDLTRRKGGLEITTLPGKLADCQEKSP 419 Query: 416 ALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALG 475 LSEL +VEGDSAGGSAKQGR+RK QA+LPL+GKILNVEK RF K++ S E+ LI ALG Sbjct: 420 ELSELLIVEGDSAGGSAKQGRDRKTQAVLPLRGKILNVEKTRFHKVIGSAEIGNLIAALG 479 Query: 476 CGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLY 535 IG +E+N DK+RYH IIIMTDADVDG HIRTLLLTFF+R IVERG++YIAQ PLY Sbjct: 480 TSIGEEEFNIDKIRYHKIIIMTDADVDGLHIRTLLLTFFFRYARPIVERGYLYIAQTPLY 539 Query: 536 KVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMIN 595 KV + + Y++DD A+++Y + + G L A+ G++L+++V + K++ Sbjct: 540 KVMRKGADVYLRDDAALEEYLLDRIVKGKELEG-ANGNVYTGQSLKRVVQQCLVLSKILE 598 Query: 596 RMERRYPKAMLKELIYQPTLTEADLSDEQ---------TVTRWVNALVSELNDKEQHGSQ 646 + + R P +L+ + + L E+ TV R ++L E G + Sbjct: 599 KFDYRIPLEILEVVFLCGEEADPHLLAERVALISFGAWTVVREDSSLFFERT---FQGLR 655 Query: 647 WKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAF 706 +++ E + ++R D YP F GEY I AF Sbjct: 656 NRYEYSPLFVPEDLEKMAKIREAISDIFYPGFARF-NNGEYHSIL-------------AF 701 Query: 707 IERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVT 766 I + +R G+ +QR+KGLGEMNPEQLW TT+DP +R + +VT Sbjct: 702 IRDAD----------------SVARAGMVLQRFKGLGEMNPEQLWSTTLDPSNRTIFKVT 745 Query: 767 VKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 +++A ADQ+ + LMGDAV PRR FI NAL A+NID+ Sbjct: 746 IEEAAVADQMCSMLMGDAVGPRRDFIVNNALNASNIDV 783 >UniRef50_B1ZTK2 DNA gyrase subunit B n=194 Tax=cellular organisms RepID=B1ZTK2_OPITP Length = 861 Score = 878 bits (2268), Expect = 0.0, Method: Composition-based stats. Identities = 393/852 (46%), Positives = 529/852 (62%), Gaps = 56/852 (6%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 + +YD+S I+ L+GL+ VRKRP MYIGDT++ GLHH VFEVVDN++DEALAG I+V Sbjct: 17 AEAYDASKIQKLEGLEGVRKRPDMYIGDTNE-RGLHHCVFEVVDNSVDEALAGFASLIVV 75 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 TIH D S S++DDGRGIP +HP + A E+++T LHAGGKF +Y+VSGGLHGVG Sbjct: 76 TIHLDGSCSIEDDGRGIPVDMHPVYKIPALELVLTNLHAGGKFGKGAYQVSGGLHGVGAK 135 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTE 181 VNA+S+ E ++R GK+++ +E G+ + V G+T+KTGT + F P E F E Sbjct: 136 CVNAVSEWFEAEVRRGGKVYQMRFEQGITTQKMQVIGDTKKTGTKITFKPDPEIFKTTRE 195 Query: 182 FEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIF 241 F+YEIL+KRLREL+FLN GV I L D+R K D F++ GI FV YLN+NK +H Sbjct: 196 FQYEILSKRLRELAFLNPGVHIELADERSQKGDRFYFRDGITEFVRYLNQNKNVVHDKPI 255 Query: 242 YFSTEK--------DGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTL 293 FS I V+V++Q+ND + + ++ + N+I +GGTHL+GFR A+TR + Sbjct: 256 TFSDSVPNETNAALPNIVVDVSMQYNDSYNDQVFAYANSIYNIEGGTHLSGFRTALTRVV 315 Query: 294 NAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQM 353 N + K+ S TGDD REGL+AV+SVKVP+P+F QTK KL + E+ V++ + Sbjct: 316 NNFARANNLLKEKDPSITGDDVREGLVAVISVKVPEPRFEGQTKTKLSNGEIDGIVQRIV 375 Query: 354 NELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQER 413 E L Y N AK ++ K ++AARAREAAR+A T RKGAL GLPGKLADC ER Sbjct: 376 GEKLRFYFEANTNIAKRIIDKTLNAARAREAARKA-RETVRKGALSGGGLPGKLADCSER 434 Query: 414 DPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITA 473 DPAL ELY+VEGDSAGGSAKQGR+R+ QAILPL+GK++NVEKAR DK+L+++E+ TLITA Sbjct: 435 DPALCELYIVEGDSAGGSAKQGRDRRYQAILPLRGKVINVEKARLDKVLANEEIRTLITA 494 Query: 474 LGCGIGRDE----YNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 G GIG E ++ DK RYH +IIMTDADVDGSHIRTLLLTF YRQM + +RG VYI Sbjct: 495 FGTGIGDHEGDGAFDGDKARYHKVIIMTDADVDGSHIRTLLLTFLYRQMRGLFDRGFVYI 554 Query: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNA 589 AQPPLYK+K+ K+EQYI +D+ +++ + + + L A A ++K+V A Sbjct: 555 AQPPLYKIKRKKREQYIDNDDQLNRILLELGSEDVVLTRIADQHVFAPAQIDKIVENLAA 614 Query: 590 TQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKF 649 +K+ + R Y A+ + L Q +T A + L D+ ++ KF Sbjct: 615 LEKLGAGVTR-YGAALSEYLDQQDHVTHALPRYIARIREGNKESHEFLRDE---AARSKF 670 Query: 650 DVHTNAEQNLFEPIVRVRTHGVDTDYPLD------------------------HEFITGG 685 + ++FE V +G T L HE Sbjct: 671 VQDHGLDADMFEQPDNVVPNGTGTASGLPVNGTTAGVNEPPRKPAATPKRITLHEIFEST 730 Query: 686 EYRRICT-------------LGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESRR 732 E ++ E+ R L+ E+A ++ E R + S + + + R+ Sbjct: 731 EMAKLLKAIAATGLEINRFGATEEARYLITENAG-QKSESRIELHSPLEIVTEIRANGRK 789 Query: 733 GLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFI 792 GLSIQRYKGLGEMNP+QL+ETTMDPE RR+L+V++ DA AD LFT LMGD V PRR FI Sbjct: 790 GLSIQRYKGLGEMNPKQLFETTMDPEKRRLLKVSINDAAKADALFTLLMGDEVPPRRQFI 849 Query: 793 EENALKAANIDI 804 E+NAL +D+ Sbjct: 850 EDNALNVQYLDV 861 >UniRef50_B2URM5 DNA gyrase subunit B n=25 Tax=Bacteria RepID=B2URM5_AKKM8 Length = 852 Score = 867 bits (2239), Expect = 0.0, Method: Composition-based stats. Identities = 360/841 (42%), Positives = 510/841 (60%), Gaps = 46/841 (5%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 + Y ++ I L+GL+AVRKRPGMYIGD D+ GLHH VFEV+DN+IDE LAG+C +I + Sbjct: 19 HEYGAAQIDKLEGLEAVRKRPGMYIGDPDE-RGLHHCVFEVLDNSIDEHLAGYCSKIDIV 77 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 IH D S+S+ D+GRGIP IHP+ G+ A E+++T LHAGGKF +YK SGGLHGVG Sbjct: 78 IHVDGSISIVDNGRGIPVDIHPKFGIPAVELVLTNLHAGGKFGQGAYKYSGGLHGVGAKC 137 Query: 123 VNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTG--ETEKTGTMVRFWPSLETFTNVT 180 VNALS + ++R+GK ++ +E G PL G E TGT + F+P FT+ T Sbjct: 138 VNALSDWFKAEVRRDGKRYQIKFERGKTVEPLRTVGSCACEVTGTTITFFPDATIFTDTT 197 Query: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGK--EDHFHYEGGIKAFVEYLNKNKTPIHP 238 EF+++ L RLREL+FLN G+ I L D+R+ + F Y+ GI FV L NK I+ Sbjct: 198 EFKFDRLTTRLRELAFLNPGLVIELIDEREAPARRETFFYKDGIVEFVRQLGTNKEVINE 257 Query: 239 NIFYFSTEK------------DGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFR 286 + S + D + V+V Q+N+ ++ NI CF N+I DGGTHL+GFR Sbjct: 258 DPISISGVRKVEVEYDGKKMEDDVLVDVVFQYNNTYETNILCFANSIYNGDGGTHLSGFR 317 Query: 287 AAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVK 346 A+TR +N Y G K+ S +G+D REGL+AV+SVK+P+P+FSSQTKDKLV++E++ Sbjct: 318 GALTRVINGYAKANGLLKEKDPSLSGEDVREGLVAVISVKMPNPRFSSQTKDKLVNTEIE 377 Query: 347 SAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGK 406 V + E + Y ENP AK ++ K I A A R T RK AL + GLPGK Sbjct: 378 GVVGNVVYEEIKTYFEENPAMAKKIIEKSI-TAARAREAARKARETVRKSALSIGGLPGK 436 Query: 407 LADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQE 466 LADC +RDPA EL++VEGDSAGGSAK GR+R+ QAILPL+GK+LNVEKAR DK L S+E Sbjct: 437 LADCSDRDPAKCELFIVEGDSAGGSAKMGRDRRTQAILPLRGKVLNVEKARLDKALGSKE 496 Query: 467 VATLITALGCGIGRD----EYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIV 522 + +ITA+G GIG + D++RYH IIIMTDADVDG+HIRTLLLTFF R MP++V Sbjct: 497 IQNMITAIGAGIGEGDDEASFKLDRVRYHKIIIMTDADVDGAHIRTLLLTFFCRHMPQLV 556 Query: 523 ERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEK 582 G++YIAQ PLY++ + K+E+Y++DD A+++ I +A++ TL + + + E L Sbjct: 557 RAGYLYIAQAPLYRIIRRKKEEYVQDDVALNRKLIELAVNDVTLRFADGSRSFSPEELSA 616 Query: 583 LVSEYNATQKMINRMERRYPKAMLKELIYQ--------PTLTEADLSDEQTVTRW----- 629 ++ Q+ M+ + L++L+ L + +E+ + + Sbjct: 617 ILETLVNLQRYTESMQAQGGS--LEDLLSHRETNGEFPEFLVKVRCGNEEEILFFHDMEA 674 Query: 630 VNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEY-- 687 + A E D G+ + ++ N P R TH + + E Sbjct: 675 LTAFSEENRDLFIFGTPSEEELLENPLPEREGPSRRSITHELHEAKAITRALARLAELGI 734 Query: 688 --RRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEM 745 I ++ L L+E + E+ P+ S L+ ++ +RG+ I R+KGLGEM Sbjct: 735 PGNMIVSMDTPLFELVEGEG---DKEKVTPLFSVMDILESVISIGKRGVEITRFKGLGEM 791 Query: 746 NPEQLWETTMDPESRRMLRVTVKD--AIAADQLFTTLMGDAVEPRRAFIEENALKAANID 803 + + L++TTMDPE R +LRV + D A+ AD++FT LMGD VEPR+ +I ++AL N+D Sbjct: 792 DAKDLFKTTMDPERRELLRVILNDDNAVRADEMFTILMGDVVEPRKNYIVDHALNVRNLD 851 Query: 804 I 804 I Sbjct: 852 I 852 >UniRef50_O33367 DNA gyrase subunit B n=6 Tax=Bacteria RepID=GYRB_MYXXA Length = 815 Score = 865 bits (2234), Expect = 0.0, Method: Composition-based stats. Identities = 392/813 (48%), Positives = 515/813 (63%), Gaps = 26/813 (3%) Query: 4 SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTI 63 Y + SI L+G +AVRKRPGMYIGDT GLH +V+EVVDNA+DE+LAGHC +I V I Sbjct: 17 EYGTDSITKLEGREAVRKRPGMYIGDT-MAYGLHKLVYEVVDNAVDESLAGHCTDIEVVI 75 Query: 64 HADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 H D S+SVQD+GRGIP G HP+ G EV++T LHAG KF + +YKVSGGLHGVGV+ Sbjct: 76 HVDGSLSVQDNGRGIPVGPHPKFPGKDTLEVVLTELHAGSKFGNGAYKVSGGLHGVGVTC 135 Query: 123 VNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEF 182 VN LS+ ++ + R G ++ Q Y GVP P G T+K GT + F P + EF Sbjct: 136 VNFLSEWFKVRVHRNGIVYEQAYAQGVPDTPPREVGTTDKRGTHIAFKPDATVM-ELVEF 194 Query: 183 EYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFY 242 +E L++RLREL+FLN+G+ I +RD+R KE F ++GGI +FVEYLNK+K +H Sbjct: 195 NFETLSQRLRELAFLNAGLHIVVRDERTNKEHDFKFDGGISSFVEYLNKSKQTLHDKPIS 254 Query: 243 FSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGY 302 FSTE++G+ +++A+QWNDG+ E IY F NNI +GG+HL+GF+AA+TRTLN+Y +K Sbjct: 255 FSTEREGVMLDIAMQWNDGYDERIYTFANNINTHEGGSHLSGFKAALTRTLNSYAEKGSL 314 Query: 303 SKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLL 362 K K + TG+DAREGL AV+SVK+ +P+F QTK KL +SEVK VEQ +N+ L +L Sbjct: 315 WKDLKETPTGEDAREGLSAVISVKLTNPQFEGQTKTKLGNSEVKGLVEQMVNDQLGSFLE 374 Query: 363 ENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYL 422 E P AK VV KI DA RAR AAR+ARE RRKG LD GLPGKLADCQ RDP SELY+ Sbjct: 375 ETPMVAKKVVAKIGDACRARLAARKARETVRRKGVLDGGGLPGKLADCQIRDPNESELYI 434 Query: 423 VEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDE 482 VEGDSAGGSAKQGR+R+NQAILPL+GKILNVEK +ML+S E+ TLITALG GIG ++ Sbjct: 435 VEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKL-LREMLTSAEIVTLITALGNGIGAED 493 Query: 483 YNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQ 542 Y+P+K RYH I +MTDADVDGSHIRTLLLT + R YKV + K+ Sbjct: 494 YDPEKARYHRIFLMTDADVDGSHIRTLLLTSSSGRCRSSCRRAISTSRSRRSYKVTRNKK 553 Query: 543 EQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYP 602 +QY+KD+ A+++Y + IA + A + T L G L+ L+ + ++ + + +R Sbjct: 554 DQYVKDEHALNEYLLKIASEHARVLTPGGE--LGGAELKALLEKVITYEERLEKQAKRRD 611 Query: 603 KAMLKEL-----IYQPTLTEADLSDEQTVTRWVNALVSELNDK-EQHGSQWKFDVHTNAE 656 ++ L + TLT R + + + W T Sbjct: 612 ARVVDALVQGARLSAETLTGRGCPGGGGEGRLMTPSSAACRTCWAACATSWCRTPSTTPR 671 Query: 657 QNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTL-----GEKLRGLLEEDAFIERGE 711 P P T RR T E LRG + RG Sbjct: 672 SWCSTP---------TRMEPCGRRCSTTPSCRRRSTWSCRLCAEHLRGAGQGAVQGPRGR 722 Query: 712 RRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI 771 V S ++ L + K+++RGL +QRYKGLGEMNPEQLW+TTM+P +R +L+V V+DA+ Sbjct: 723 GEITVFSVQEVLAAVRKDAQRGLGLQRYKGLGEMNPEQLWDTTMNPATRTLLQVRVEDAV 782 Query: 772 AADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 +D++F+ LMG+AVEPRR FIE NAL N+DI Sbjct: 783 ESDEIFSLLMGEAVEPRREFIERNALDVQNLDI 815 >UniRef50_Q1MQ88 DNA gyrase subunit B n=6 Tax=Bacteria RepID=Q1MQ88_LAWIP Length = 799 Score = 864 bits (2233), Expect = 0.0, Method: Composition-based stats. Identities = 367/808 (45%), Positives = 509/808 (62%), Gaps = 20/808 (2%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 + Y + SI +L+GL AVR RP MYIG TD GLHH+V+EV+DN+IDEA+AG C I Sbjct: 8 IPKDYTADSITILEGLQAVRMRPAMYIGSTDT-RGLHHLVYEVIDNSIDEAMAGFCTRID 66 Query: 61 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 V +H DNS++V+D+GRGIP IHP+EGV A +V+MT LHAGGKFD+++YKVSGGLHGVG+ Sbjct: 67 VVLHLDNSITVRDNGRGIPVDIHPKEGVPAVQVVMTKLHAGGKFDNDTYKVSGGLHGVGL 126 Query: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVT 180 S VNALS++LE+ I R G +Q Y GVP L GE++ GT +RF E F T Sbjct: 127 SCVNALSEQLEVTILRGGYRWKQKYSRGVPLENLQRIGESDNHGTTIRFKADEEIF-ETT 185 Query: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNI 240 E+ YE L +R EL++LN G+ I D+R + F EGGI FV+ +N ++ +H I Sbjct: 186 EYSYETLKRRFEELAYLNKGLEIHCTDERTSETHLFKAEGGIHQFVKDINTGESILHS-I 244 Query: 241 FYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD-K 299 + +G+ ++ ALQ+N G++EN F NNI ++GGTHLAGF+ A+TR +N Y+ + Sbjct: 245 ISRESIVEGVMIDFALQYNAGYKENTLTFANNIRTKEGGTHLAGFKTALTRAINGYIKGQ 304 Query: 300 EGYSKKAK-VSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 SKK K + +GDD REGL AV+SVK+P+P+F QTK KL +SE+ V + L Sbjct: 305 PDLSKKLKGQTLSGDDVREGLTAVLSVKLPNPQFEGQTKTKLGNSEIAGIVGGAVYTSLD 364 Query: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Y ENP D + ++ K IDAARAREAARRA+E+ RRKGAL LPGKLADCQ ++PA S Sbjct: 365 TYFQENPKDIRCIIDKAIDAARAREAARRAKELVRRKGALFDNALPGKLADCQSKNPAES 424 Query: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 EL++VEGDSAGGSAKQGRN QAILPL+GKILN+E+ RFDKML+++E+ LITA+G GI Sbjct: 425 ELFIVEGDSAGGSAKQGRNPNIQAILPLRGKILNIERTRFDKMLANKEIKALITAMGAGI 484 Query: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 G ++ + KLRY+ I+IMTDADVDG+HIRTLLLTFF+R ++ERGH+YIAQPPLY+V Sbjct: 485 GEEDTDYQKLRYYKIVIMTDADVDGAHIRTLLLTFFFRNYVGLIERGHLYIAQPPLYRVH 544 Query: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598 K E++IKDD +++ + + + T + + + + + +Q+ + Sbjct: 545 NSKSEKFIKDDPSLNDFLLHRVSSELEIQTESGKLLKGSDIITTMKQIESISQRTKDAEL 604 Query: 599 RRYPKAMLKELIYQP-TLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQ 657 + + LI P LT LS + + ++N + N Sbjct: 605 AGISENLFMLLITSPKKLTSDVLSSLEEIQLYLNTSGYNIT-------------VENESH 651 Query: 658 NLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIE-RGERRQPV 716 + + + + + +F Y + + L + FI + Sbjct: 652 EDGDRLFTIFENKNGHKTRIPADFFASKIYSSTWDVMDSLLTMCGGINFIVFHSGTSHTI 711 Query: 717 ASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQL 776 + + + E+R+G++IQRYKGLGEMNPEQLW TTMDP++R +L+VT+ DA A++ Sbjct: 712 NDLFKLYQFTLDEARKGINIQRYKGLGEMNPEQLWVTTMDPQNRTLLQVTINDAEEANET 771 Query: 777 FTTLMGDAVEPRRAFIEENALKAANIDI 804 F LMG+ VEPRR FIE NAL ++DI Sbjct: 772 FEQLMGERVEPRREFIERNALNVRDLDI 799 >UniRef50_B5YGU1 DNA gyrase subunit B n=9 Tax=Bacteria RepID=B5YGU1_THEYD Length = 759 Score = 857 bits (2215), Expect = 0.0, Method: Composition-based stats. Identities = 400/809 (49%), Positives = 545/809 (67%), Gaps = 74/809 (9%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 SY + IK+LKGL+ VR RP MYIG T GLHH+V+EVVDN++DEALAG C +I V Sbjct: 18 ESYKAEHIKILKGLEGVRTRPAMYIGSTG-VEGLHHLVYEVVDNSVDEALAGFCNKIEVR 76 Query: 63 IHADNSVSVQDDGRGIPTGIHPE--EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 +H D S SV D+GRGIPT IHP+ E +A E+++T LHAGGKF+ +YKVSGGLHGVG+ Sbjct: 77 LHTDGSCSVIDNGRGIPTEIHPDDPEKRTALEIVLTELHAGGKFESKAYKVSGGLHGVGL 136 Query: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVT 180 SVVNALS+ LE+ +QR+GK+ RQ Y G+P + V G+TEKTGT ++F E F VT Sbjct: 137 SVVNALSEWLEVEVQRDGKVVRQKYCRGIPVTGVEVIGQTEKTGTKIKFKADPEIF-EVT 195 Query: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNI 240 EF EILA R +ELS+LN G+ I L D+RDG + F EGGI +FVE LNK K P+HP Sbjct: 196 EFSREILAHRFKELSYLNRGLKIILIDERDGYVEEFIKEGGIVSFVEDLNKGKKPLHPKP 255 Query: 241 FYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKE 300 Y + +KD + VE+A+Q+N+G+ E I F NNI ++GGTHL GF++A+TRT+N+Y Sbjct: 256 IYITGQKDRVIVEIAIQYNEGYSEEILTFVNNINTKEGGTHLVGFKSALTRTINSYAMLN 315 Query: 301 GYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEY 360 G K+ K S +G+D REG++ V+SVK+P+P+F QTK KL +SEVK VE +NE L+ + Sbjct: 316 GLLKEGKESLSGEDVREGIVGVISVKIPEPQFEGQTKMKLGNSEVKGIVETILNEKLSRW 375 Query: 361 LLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSEL 420 L ENP AK ++ K DAARAREAA++A+E+TRRKG L+ LPGKLADC E+DP+ +EL Sbjct: 376 LEENPNYAKRIIEKAKDAARAREAAKKAKELTRRKGILEDTTLPGKLADCTEKDPSHAEL 435 Query: 421 YLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR 480 ++VEGDSAGGSAKQ R+R++QA+LPL+GKILNVEKAR DKML+S+E+ TLITA+G GIG+ Sbjct: 436 FIVEGDSAGGSAKQARDRRSQAVLPLRGKILNVEKARIDKMLTSEEIKTLITAIGGGIGK 495 Query: 481 DEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKG 540 + + P+ +RYH II+MTDADVDG+HIRTLLLTFFYRQM ++E+G++YIAQPPLY++K+G Sbjct: 496 EHFEPENVRYHKIILMTDADVDGAHIRTLLLTFFYRQMLPLIEKGYLYIAQPPLYRIKRG 555 Query: 541 KQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERR 600 K E+YI+ ++ ++ + IA+D + + ++ KL+ EY +++ ER+ Sbjct: 556 KWERYIQTEDEFHEFLMDIAVDEISFIEESELS--TKKSFLKLLFEYG---RILENFERK 610 Query: 601 -----YPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNA 655 Y + +L+ L +Q DL D +T+ Sbjct: 611 GFSPFYIENILETLQFQQDNQIVDLRDFETL----------------------------- 641 Query: 656 EQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQP 715 QN+FE I ++ D +Y + RI T K + L Sbjct: 642 -QNIFEKIKLIQGIREDKNYII-----------RIKTEAVKTKSLW-------------- 675 Query: 716 VASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQ 775 + + ++ ++GL+IQRYKGLGEMNPEQLWETTMDPE R +L+VTV+DA A++ Sbjct: 676 -----ELYNKVMDAVKKGLTIQRYKGLGEMNPEQLWETTMDPEKRTLLQVTVEDAQRANE 730 Query: 776 LFTTLMGDAVEPRRAFIEENALKAANIDI 804 +FT LMGD VEPR+ FI +AL+ N+DI Sbjct: 731 IFTILMGDEVEPRKEFIVRHALEVRNLDI 759 >UniRef50_C3XDF7 DNA gyrase subunit B n=5 Tax=Campylobacterales RepID=C3XDF7_9HELI Length = 775 Score = 842 bits (2176), Expect = 0.0, Method: Composition-based stats. Identities = 362/808 (44%), Positives = 527/808 (65%), Gaps = 42/808 (5%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 + Y + +IKVLKGL+AVRKRPGMYIGDT+ GLHHM++EVVDN+IDEA+AG CK I + Sbjct: 5 TKEYLADNIKVLKGLEAVRKRPGMYIGDTNTN-GLHHMIYEVVDNSIDEAMAGFCKNIKI 63 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 T+ S ++DDGRGIP +HP E + AA V++TVLHAGGKFD ++YKVSGGLHGVGVS Sbjct: 64 TLTDKGSAIIEDDGRGIPVDMHPTENMPAATVVLTVLHAGGKFDKDTYKVSGGLHGVGVS 123 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTE 181 VVNALS KL + I + KI++Q +E G+P L + GET+K GT + F+P E +TE Sbjct: 124 VVNALSCKLIMTIYKNNKIYKQEFEKGIPTTELEIIGETKKHGTTIEFFPDPEIM-EITE 182 Query: 182 FEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIF 241 F+ IL +R +E+++L G+ IR +D+RDG + FH+EGG+ F+E +N K + I Sbjct: 183 FDSNILTRRFKEMAYLTHGIKIRFKDERDGSDTTFHFEGGLSQFIEDIN--KKTLITQIL 240 Query: 242 YFSTEKD--GIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDK 299 F ++ +E+AL +N+G+ E + F NNI DGGTH AGFRA ++R + Y++ Sbjct: 241 SFEATENEYDSEIEIALAYNEGYDEKVLSFVNNIRTPDGGTHEAGFRAGLSRAILNYIEA 300 Query: 300 EGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAE 359 +++ V GDD REGL+A+V+ K+ DP+F QTK KL SS VK V++ E +++ Sbjct: 301 NANTREKDVKVLGDDVREGLVAIVATKIMDPQFEGQTKGKLGSSFVKGIVQKLTYEKISK 360 Query: 360 YLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSE 419 + ENPT AK+++ K++ AAR REAA+RAR++TR+ + ++ LPGK ADCQ +DP+ E Sbjct: 361 FFEENPTQAKLIMQKVLIAARGREAAKRARDLTRKDNKVSVSTLPGKFADCQSKDPSECE 420 Query: 420 LYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIG 479 +YLVEGDSAGGSAKQGR+R+ QAILPL+GKILNVEK+R D +L S+E+ +ITA GCGIG Sbjct: 421 IYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKSRLDTILKSEEIKNMITAFGCGIG 480 Query: 480 RDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKK 539 DE+N +KLRYH IIIMTDADVDGSHI+TLL+TFFYR +V+ G++YIAQPPLYK K+ Sbjct: 481 -DEFNEEKLRYHKIIIMTDADVDGSHIQTLLMTFFYRYFKPLVQGGYIYIAQPPLYKYKR 539 Query: 540 GKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMER 599 K+E Y+KDD+A+ + I ++ L +++ ++++N +ER Sbjct: 540 NKKEVYLKDDKALSDFLIENGIEHFNFKGIGHN------ELLQILKIIAHYRQLVNDLER 593 Query: 600 RYPKAMLKELIYQPTLTEADLSDEQTVTRWVNA--LVSELNDKEQHGSQWKFDVHTNAEQ 657 RY ++ ++ E D D +++++ + + L + N ++H + + NA+ Sbjct: 594 RYS---VQYVLRYLVENELDTHDLESLSKNIESYLLSKQYNVLKKHID--EVSITLNAQT 648 Query: 658 NLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRIC-TLGEKLRGLLEEDAFIERGERRQPV 716 NL +++ + I+ E +RI + E+ LE I Sbjct: 649 NLGITEIKITRNLFHD--------ISFKECKRIYQKITERELEFLEGKDIITG------- 693 Query: 717 ASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQL 776 L+ + + +R+ I RYKGLGEMN E+LWETTM P++R +++V ++D AD++ Sbjct: 694 ------LEEIEEATRKKGDISRYKGLGEMNKEELWETTMSPQNRTLVQVKIEDDEMADEM 747 Query: 777 FTTLMGDAVEPRRAFIEENALKAANIDI 804 F MGD VEPRR +I+++A N+D+ Sbjct: 748 FNIFMGDEVEPRRQYIQKHARDVKNLDV 775 >UniRef50_C5B4P3 DNA gyrase, subunit B n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B4P3_METEA Length = 816 Score = 826 bits (2135), Expect = 0.0, Method: Composition-based stats. Identities = 383/815 (46%), Positives = 513/815 (62%), Gaps = 28/815 (3%) Query: 4 SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTI 63 +YD+SSI+VL+GL+AVRKRPGMYIGDT+DGTG HHMV+EVVDN IDE LAGH + VT+ Sbjct: 9 AYDASSIQVLEGLEAVRKRPGMYIGDTNDGTGFHHMVWEVVDNGIDECLAGHADRVTVTL 68 Query: 64 HADNSVSVQDDGRGIPTGIHPEE-GVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 +AD SV+V D+GRGIP HP+ G SAAE+IMTVLHAGGKFD NSYKVSGGLHGVGVSV Sbjct: 69 NADGSVTVVDNGRGIPVDPHPKYPGKSAAEIIMTVLHAGGKFDQNSYKVSGGLHGVGVSV 128 Query: 123 VNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVTE 181 VNALS LEL I R G+ H +EHG P P+ G+ + + GT V F PSL TFT V E Sbjct: 129 VNALSSLLELTIWRGGREHYMAFEHGEPAGPIRDVGDAKGRRGTSVTFTPSLRTFTGVVE 188 Query: 182 FEYEILAKRLRELSFLNSGVSIRLRDKR--DGKEDHFHYEGGIKAFVEYLNKN--KTPIH 237 F ++ +RLREL+FLNSGV I D+R D +YEGG+ +V Y+++ + + Sbjct: 189 FSAAVIERRLRELAFLNSGVRIVFHDRRVKDVDPVEMYYEGGVGEYVGYIDRTAGRDRVI 248 Query: 238 PNIFYFSTEKDG----------IGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRA 287 TE+ +G+EVALQWND E++ FTNNIPQ DGGTH+ GF+ Sbjct: 249 ARPIVVRTERSVEVEGNPGPIPVGIEVALQWNDSTTESVLPFTNNIPQTDGGTHVQGFKT 308 Query: 288 AMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKS 347 A+TR+ AY+D+ K K +GDD REGL A+VSVK+PDPKF+SQTK KLVS+EV Sbjct: 309 ALTRSFMAYVDRNPL--KTKTGLSGDDLREGLTAIVSVKLPDPKFASQTKAKLVSNEVSG 366 Query: 348 AVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDL-AGLPGK 406 V+ + E LA +L ENP DA+ V+ K ++AA AREAA+RAREM RRK LD LPGK Sbjct: 367 PVQSAVGEALATWLDENPADARKVIDKAVEAAAAREAAKRAREMVRRKTVLDDITSLPGK 426 Query: 407 LADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQE 466 LADC+ERDP+ SE+ +VEGDSAGGSAKQGR+ + QA+LPL+GKILN E AR D+++ + Sbjct: 427 LADCRERDPSKSEILIVEGDSAGGSAKQGRDSEFQAVLPLRGKILNTETARLDRIMKNAA 486 Query: 467 VATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGH 526 V TL+ ALGCGIG+ ++PDK+RYH IIIMTDADVDG+HIRTLLL FF+R MPE++ RG Sbjct: 487 VGTLVKALGCGIGKGSHDPDKVRYHRIIIMTDADVDGAHIRTLLLAFFFRHMPELINRGF 546 Query: 527 VYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSE 586 VY A+PPLY ++K ++ +++DD A+D+ + + +G A L+G L + Sbjct: 547 VYKAEPPLYSIEKKGRKTFLRDDVALDRELLRLGSEGIAFR-RADGAVLSGVDLAVAAEQ 605 Query: 587 YNATQKMINRMERRYP-KAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGS 645 A ++ ++ + + EL+ L D++ + R + A +S S Sbjct: 606 AKADARLFAAIDADVGLRPLADELVVSGWLDPVLWQDDEAMLR-LGAEISARMPSMMPAS 664 Query: 646 QWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDA 705 +W + + +R GV + + G + +++ + A Sbjct: 665 RWTSEAEAEGLR------MRWTVKGVGQERLVPRALCEGAVAHTLVRRRQQIAQVYGAGA 718 Query: 706 FIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRV 765 I PV D + + +GL+I RYKGLGEM +QL ETT+DP +R ++++ Sbjct: 719 AILGPAGEIPVPGPSSLFDHVRELGGKGLTIGRYKGLGEMTAQQLSETTLDPTARSIVQI 778 Query: 766 TVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAA 800 V+DA AA LMG EPR+ +E Sbjct: 779 RVEDAEAARAKVDQLMGSKSEPRKHLLETRGHLVE 813 >UniRef50_A6DH73 DNA gyrase subunit B n=7 Tax=cellular organisms RepID=A6DH73_9BACT Length = 838 Score = 824 bits (2128), Expect = 0.0, Method: Composition-based stats. Identities = 370/835 (44%), Positives = 525/835 (62%), Gaps = 37/835 (4%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 + Y + SI V+KGL+AVRKRP MYIGDT++ GLHH+V+EVVDN+IDEALAGHC I V Sbjct: 9 AGEYGADSISVMKGLEAVRKRPSMYIGDTNE-RGLHHLVYEVVDNSIDEALAGHCNNITV 67 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 +H DNSV+V DDGRGIP IH EEG+ A E+++T LHAGGKFD +SYKVSGGLHGVGVS Sbjct: 68 KLHIDNSVTVVDDGRGIPVNIHEEEGIPAVELVLTKLHAGGKFDKDSYKVSGGLHGVGVS 127 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTE 181 VNALS+ +E+ + R+ +H +E G+ + L G T TGT V F P E FT Sbjct: 128 CVNALSEWMEVKVHRDETLHFIRFERGLTETSLKTIGHTNITGTEVIFKPDFEIFTETLI 187 Query: 182 FEYEILAKRLRELSFLNSGVSIRLRDKRD---GKEDHFHYEGGIKAFVEYLNKNKTPIHP 238 ++++ILAKRLREL+FLN G++I D+R + + F++ GGI FV++LN KT + Sbjct: 188 YKWDILAKRLRELAFLNPGITINFIDERAEDGERRETFYFPGGIGEFVKHLNDGKTVVTD 247 Query: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 + FSTEKDG+ +V+ Q++DGFQENIY + NNI +GGTHLAGF+ A+T ++N+YM Sbjct: 248 TV-TFSTEKDGVTADVSFQYHDGFQENIYSYCNNIHTIEGGTHLAGFQTALTASINSYMK 306 Query: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 + K K + +G D REGL A++SVKVP+P+F QTK KL ++EV+S V ++ Sbjct: 307 NDSKFKNEK-NVSGTDVREGLTAIISVKVPEPQFEGQTKTKLGNNEVRSIVRAIVSTSFN 365 Query: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 E+L ENP AK+VV K + A RA AA RAR++ R+ L+ GKL+ C ++P Sbjct: 366 EFLEENPKAAKVVVEKALLANRASAAALRARQLIRKDNVLEGFADAGKLSGCSSKNPDEC 425 Query: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 E+++VEGDSAGGSAKQGRN + QAILPL+GK++NVEKAR DK+ ++ E+ +LI+A+GCG+ Sbjct: 426 EIFIVEGDSAGGSAKQGRNSEVQAILPLRGKLINVEKARIDKVFANTEIGSLISAIGCGV 485 Query: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 G +E++ +K+RY I+IMTDADVDGSHI TLLLTFF+RQM ++E G++Y+AQPPLYKV Sbjct: 486 G-NEFDVEKIRYKKIVIMTDADVDGSHIMTLLLTFFFRQMKPLIEAGYIYVAQPPLYKVV 544 Query: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598 + K+E+YIK+D ++ + + + +DG TL + L+ ++++ T + +E Sbjct: 545 RRKREEYIKNDAMLNNFLLELGVDGITLENKLAGNTLSPRETNEILALIKRTLAVGKGLE 604 Query: 599 RRYP--KAMLKELIYQPTLTEADL---SDEQTVTRWVNALVSELNDKEQHGS----QWKF 649 + L+ ++ +L A + D+ T + + EL + Sbjct: 605 NHGVTLETYLQHVLEDGSLPIARVGVREDDGTYSIYFPTSQEELAQIIDDATERLKPVIT 664 Query: 650 DVHTNAEQNLFE--------------------PIVRVRTHGVDTDYPLDHEFITGGEYRR 689 V T+AE E P + V T E + Sbjct: 665 FVDTDAESETIEGEEVLEGELVEEEAEEVGIHPSIEVNELHEKTLIEEIREKLETVS-LT 723 Query: 690 ICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQ 749 + E L E + G P+ + Q + + E +GL +QRYKGLGEMN +Q Sbjct: 724 LQHFLEPEDALAEPIFNLTDGNNDTPIFTLIQLFEAIKDEGSQGLKLQRYKGLGEMNADQ 783 Query: 750 LWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 LWETTMDP R +L+VT++DA+ A+++F+ LMGD VEPRR FIE+ + +D+ Sbjct: 784 LWETTMDPTRRDLLQVTMEDAVEAERMFSLLMGDVVEPRRHFIEKYSTTLKELDV 838 >UniRef50_A6G5S5 DNA gyrase subunit B n=11 Tax=Bacteria RepID=A6G5S5_9DELT Length = 872 Score = 823 bits (2127), Expect = 0.0, Method: Composition-based stats. Identities = 414/843 (49%), Positives = 537/843 (63%), Gaps = 46/843 (5%) Query: 4 SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTI 63 +YD SSI L+GL+AVRKRPGMYIGDTD TGLH MVFE++DN+IDEALAGHCK+I + I Sbjct: 34 AYDESSISHLEGLEAVRKRPGMYIGDTD-VTGLHKMVFEILDNSIDEALAGHCKQIQIVI 92 Query: 64 HADNSVSVQDDGRGIPTGIHPEEG--VSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 H D S+SV+DDGRGIPTG EG V AA + T LH GGKFD+ +YKVSGGLHGVGV+ Sbjct: 93 HEDESISVEDDGRGIPTGPMEVEGKMVPAAIAVFTKLHVGGKFDNAAYKVSGGLHGVGVT 152 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTE 181 VVNALS LEL I+REGK+ +E G L V GETE GT V F +T V Sbjct: 153 VVNALSDWLELEIKREGKVFTARFERGEVARELDVVGETEARGTKVTFHADPLIYTGV-R 211 Query: 182 FEYEILAKRLRELSFLNSGVSIRLRDKR------DGKEDHFHYEGGIKAFVEYLNKNKTP 235 +++ L+ R RELS+L GV+I L D R +E F EGG+ +FVE L +T Sbjct: 212 VDFDTLSSRFRELSYLTEGVNITLTDLRPTINGEKKREQSFDGEGGVASFVELLTAKRTR 271 Query: 236 IHPNI-------FYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAA 288 I I F F + +GV+VALQW D + E ++C+TNNI RDGGTHL G R + Sbjct: 272 IGAMIELRSQVPFEFEGQDHELGVQVALQWTDAYHEMVHCYTNNIANRDGGTHLTGLRTS 331 Query: 289 MTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSA 348 +TR +N Y + K K S G+D REGL+A++SVK PDPKF+SQTK+KLVSSEV + Sbjct: 332 LTRVVNGYAGDKNLLKGHKGSLAGEDVREGLVAIISVKHPDPKFNSQTKEKLVSSEVTAL 391 Query: 349 VEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLA 408 V + E L+ + E P DAK+VV K + AARAR AAR+ARE RKG LD LPGKLA Sbjct: 392 VGTAVTEALSRHFEEKPKDAKLVVEKALLAARARAAARKARETITRKGVLDGLSLPGKLA 451 Query: 409 DCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 468 DCQE+DP L+EL++VEGDSAGGSAKQGR+RK QAILPL+GKILNVEKAR DK+LSSQE+ Sbjct: 452 DCQEKDPELAELFIVEGDSAGGSAKQGRDRKVQAILPLRGKILNVEKARIDKILSSQEIV 511 Query: 469 TLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVY 528 TLITALG GIG D Y+ DKLRYH IIIMTDADVDGSHIRTLLLTFF+R EI+ERG++Y Sbjct: 512 TLITALGTGIGEDTYSIDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRHFVEIIERGYLY 571 Query: 529 IAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYN 588 +AQPPLYKVK GK+E+YIK++ A+D++ +S A+ L A + E L ++ + Sbjct: 572 VAQPPLYKVKAGKKERYIKNEGALDEFIVSNAVAD--LELEIGGAAASKEVLAEVANAGI 629 Query: 589 ATQKMINRMERRYPKAMLKELIYQPTL-------------TEADLSDEQT---------- 625 ++ +ER + + +L+ ++ +A L+ Sbjct: 630 RYNNVLRSLEREHRRGILEGILGAIEARGWEAVEAAFEQGDDAFLAAMGQAVVEAAVPTM 689 Query: 626 -VTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVR--VRTHGVDTDYPLDHEFI 682 +T+ +L L++ E + + ++R V + GV + + + Sbjct: 690 PLTKVAASLRKVLDEVEAPAEGEGDEGEGEVQAARERTVLRFAVLSDGVTVNEDVGLPLL 749 Query: 683 TGGEYRRICTLGEKLRGLLEEDAFIE-RGERRQPVASFEQALDWLVKESRRGLSIQRYKG 741 E R + + +L E + +G+ S Q +D + + R GLSIQRYKG Sbjct: 750 RSTEIRELLRIRAELAARGEGAIKLRKKGDTIAEPKSLMQVIDHVGEVGRSGLSIQRYKG 809 Query: 742 LGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAAN 801 LGEMNP+QLWETTMDPE+R +L++ + + AD++FT LMGD V PRR FI ENAL N Sbjct: 810 LGEMNPDQLWETTMDPENRELLQIKIAEKDIADEVFTVLMGDEVAPRREFITENALNTRN 869 Query: 802 IDI 804 +D+ Sbjct: 870 LDV 872 >UniRef50_D2R8B1 DNA gyrase, B subunit n=80 Tax=Bacteria RepID=D2R8B1_9PLAN Length = 830 Score = 822 bits (2124), Expect = 0.0, Method: Composition-based stats. Identities = 360/825 (43%), Positives = 503/825 (60%), Gaps = 29/825 (3%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 Y++ SIK L L+ VR RP MYIGD GLHH+V+EVVDN+IDEA+AGH K++ V Sbjct: 12 KDYNAESIKHLSDLEHVRLRPAMYIGDI-TARGLHHLVYEVVDNSIDEAMAGHAKQVSVI 70 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEG------VSAAEVIMTVLHAGGKFDDNSYKVSGGLH 116 ++ D SV+V+DDGRGIP H + VS E +MT L GGKFD +SYK SGGLH Sbjct: 71 VNTDGSVTVEDDGRGIPVERHEQLSASEGRDVSTLEGVMTKLKFGGKFDKDSYKTSGGLH 130 Query: 117 GVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETF 176 GVGV+VVN LSQ E+ + R GKI++Q YE G P P+ G T++TGT F P F Sbjct: 131 GVGVTVVNFLSQWAEVQVCRGGKIYQQSYETGAPTGPVREIGSTDRTGTKTTFKPDGTIF 190 Query: 177 TNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPI 236 T+++Y+IL KRL+EL+FLNSGV I+ +D+R+G+ F YE GI F+E+LN+ I Sbjct: 191 -QTTKYQYDILHKRLQELAFLNSGVRIKFKDERNGEGAEFCYERGIIEFIEHLNRASDVI 249 Query: 237 HPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAY 296 H ++ Y E D +G E+ALQ++ + EN++ + NNI +GGTH++GFR+A+TRTLNAY Sbjct: 250 HSDVIYLRGEVDTVGFEIALQYSAEYTENLHSYVNNIHTVEGGTHVSGFRSALTRTLNAY 309 Query: 297 MDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNEL 356 KEG K ++ TGDD REGL AV+SV+V P+F QTK KL + EV V +NE Sbjct: 310 GKKEGLFK--DITPTGDDFREGLTAVISVRVAHPQFEGQTKTKLGNGEVDGIVAGAVNEF 367 Query: 357 LAEYLLENPTDAKIVVGK-IIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDP 415 LA++L ENP AKI+V K ++ A A + + RK AL GLPGKL DC ++ Sbjct: 368 LAKFLEENPKTAKIIVRKGVLAAEAREAARKAKEVLRSRKNALGGGGLPGKLRDCISKEM 427 Query: 416 ALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALG 475 ELYLVEGDSAGGSA+ GR R QAILPL+GKI+N K+R DK+L+++EV ++I A+G Sbjct: 428 ERCELYLVEGDSAGGSAEGGRLRDFQAILPLRGKIINAYKSREDKVLANEEVQSMIQAIG 487 Query: 476 CGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLY 535 GIG E + K RY+ IIIMTDADVDGSHIRTLLL FFYRQM +V GHVY+AQPPL+ Sbjct: 488 TGIGA-EIDLTKRRYNKIIIMTDADVDGSHIRTLLLCFFYRQMYSLVANGHVYVAQPPLF 546 Query: 536 KVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMIN 595 +V+ K+ Y++ DE M +S + L + G+ ++K+ + + + Sbjct: 547 RVRSKKETYYVQTDEEMRSQLLSRGIGDTELDLQ-NGTKFVGDDMKKIAGILASMEDALV 605 Query: 596 RMERRYPKAMLKEL----------IYQPTLTEAD--LSDEQTVTRWVNALVSELNDKEQH 643 +ERR L + + D L + + V L SEL K Sbjct: 606 ALERRGISLKLHATRADVNTGALPVVHLFIGSRDYWLRSAEEINAKVQELESELKKKIIF 665 Query: 644 GSQWKFDV--HTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYR-RICTLGEKLRGL 700 G + T+A + E +R + + ++ Y + L + R Sbjct: 666 GEKVVEAAPGATDAPPAVDENAIRAYSVELHEVKTINAGLSQLKPYSIDLAALIPQERTG 725 Query: 701 LEEDAFI-ERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPES 759 +E +I RGE P+ + + + ++G+S+ R+KGLGEMN E+L +TT+DP++ Sbjct: 726 TDEPRYILRRGENEIPLKELRTLVASIREMGQKGMSVTRFKGLGEMNAEELRDTTLDPKN 785 Query: 760 RRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 R +++V+++DA AAD +F LMG+ VEPRR FIE +AL+ N+D+ Sbjct: 786 RTLVQVSMRDAGAADDMFRVLMGEKVEPRRQFIETHALEVRNLDV 830 >UniRef50_D0RQH0 DNA gyrase subunit B n=2 Tax=Bacteria RepID=D0RQH0_9RICK Length = 834 Score = 821 bits (2122), Expect = 0.0, Method: Composition-based stats. Identities = 400/841 (47%), Positives = 539/841 (64%), Gaps = 52/841 (6%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Y + SIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHC I+V Sbjct: 8 KTEYGADSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCDTIVV 67 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 I+ DNSVSV D+GRGIP IH E +SAAEVIMT LHAGGKFD +YKVSGGLHGVGVS Sbjct: 68 KINKDNSVSVSDNGRGIPVEIHKTEKISAAEVIMTQLHAGGKFDHKTYKVSGGLHGVGVS 127 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTE 181 VVNALS+ L++ I R+GK + +E+G+ +APL G+++ GT V F PS E FT+ T+ Sbjct: 128 VVNALSKSLKVDIFRDGKKYFVEFENGITKAPLKEIGKSDLKGTNVTFLPSSEIFTD-TK 186 Query: 182 FEYEILAKRLRELSFLNSGVSIRLRDKRDGKED--HFHYEGGIKAFVEYLNKNKTPIH-- 237 F IL KRL+EL++LN G++I+L D+R K +F ++GGIK FV+ LNK K I Sbjct: 187 FNLSILEKRLKELAYLNKGLNIQLSDERKEKAKILNFKFDGGIKEFVKDLNKLKNKIKNE 246 Query: 238 ------PNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTR 291 YF + K+ I VE AL WN + EN+ CFTNNIPQ+DGGTHL GFR ++TR Sbjct: 247 DSQFTLEEPLYFQSNKNDIDVECALLWNSSYNENVLCFTNNIPQKDGGTHLLGFRNSITR 306 Query: 292 TLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQ 351 +N Y + G KK KV+ GDD REGLI V+SVKVPDPKFSSQTK+KLVSSEV+ VE Sbjct: 307 LINKYANDFGLLKKDKVTIVGDDVREGLICVLSVKVPDPKFSSQTKEKLVSSEVRPVVET 366 Query: 352 QMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQ 411 NE ++ + +NP AK ++GKII AA ARE AR+ARE RRK A+D+ LPGKLADCQ Sbjct: 367 ITNEKISLWFDQNPKIAKTIIGKIIQAAVAREVARKARESVRRKNAIDITSLPGKLADCQ 426 Query: 412 ERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE----------KARFDKM 461 D +EL++VEGDSAGGSAKQ RNR+ QA+LPL+GKILN K F KM Sbjct: 427 SNDINKTELFIVEGDSAGGSAKQARNREFQAVLPLRGKILNTFVEAKNNSPDVKKVFSKM 486 Query: 462 LSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFF-YRQMPE 520 LSS E+ TLI A+G G+ + + +KLRY I+IMTDADVDGSHIRTLLLTFF + E Sbjct: 487 LSSNEIVTLINAIGTGV--EPFELEKLRYGKIVIMTDADVDGSHIRTLLLTFFNNKPFNE 544 Query: 521 IVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISI---ALDGATLHTN-----ASA 572 ++++GH+YIAQPPLYK+K GK Y+K++ +++ I ++ T N Sbjct: 545 LIKKGHIYIAQPPLYKIKSGKTVNYLKNENDLEKLAIENSLKKIESVTFKNNKKFNYDKT 604 Query: 573 PALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNA 632 + L KL+ + ++++ ++ +I +TE + Q + A Sbjct: 605 FIVQSYELYKLIKSIDGDKEILEQLSIVGAFTKKDNIIL---ITED--KNNQKKLGAIKA 659 Query: 633 LVSELNDK-EQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRIC 691 + LN E+ S+W+ + ++R + + LD F++ + Sbjct: 660 VAENLNQNLEKDDSKWQGLFEND------SFVLRREFYHELIEKRLDINFLSNNKVLTNL 713 Query: 692 TLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLW 751 + K+ + + I+ G+ V S + ++ +++ ++ LS+QR+KGLGEMNP++LW Sbjct: 714 SKFNKIANIFQSSCVIKDGDVPHKVNSLIEFIEIIIEIGKKNLSLQRFKGLGEMNPDELW 773 Query: 752 ETTMDPESRRMLRVTVKD--------AIAADQLFTTLMGDAVEPRRAFIEENALKAANID 803 ETT++PE+ +L+V + + + D++F TLMG+ V R+ FI NA+ +N+D Sbjct: 774 ETTLNPENNSLLKVNYSELNGEISEPSSSDDEIFFTLMGEDVSKRKNFINSNAINVSNLD 833 Query: 804 I 804 I Sbjct: 834 I 834 >UniRef50_Q9ZLX3 DNA gyrase subunit B n=50 Tax=Epsilonproteobacteria RepID=GYRB_HELPJ Length = 773 Score = 792 bits (2046), Expect = 0.0, Method: Composition-based stats. Identities = 350/817 (42%), Positives = 516/817 (63%), Gaps = 60/817 (7%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 +Y S SIKVLKGL+ VRKRPGMYIGDT+ G GLHHMV+EVVDNA+DE++AG C I +T Sbjct: 2 QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 + + S V+D+GRGIP IHP E + A V++T+LHAGGKFD+++YKVSGGLHGVGVSV Sbjct: 61 LTEEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120 Query: 123 VNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE---KTGTMVRFWPSLETFTNV 179 VNALS++L + I++EG+I+RQ +E G+P + L + G+T+ ++GT + F+P E+ V Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPD-ESVMEV 179 Query: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPN 239 EF+ IL KR +E+++LN G+ I ++++ ++ + Y+ G+K FV+ K K + P Sbjct: 180 VEFQAGILQKRFKEMAYLNDGLKISFKEEKTQLQETYFYKDGLKQFVKDSAK-KELLTPI 238 Query: 240 IFYFS-TEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 I + S E+ +EVAL + D + EN F NNI +GGTH AGF+ +++ + Y+D Sbjct: 239 IAFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298 Query: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 +K++ +D +EGLIAVVS+K+ +P F QTK KL SS ++ V + + + + Sbjct: 299 NNIKTKES--RPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIH 356 Query: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 ++L ENP +AKI+ K + AA+AREA+++ARE+TR+K L + LPGKLADCQ +DP S Sbjct: 357 QFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416 Query: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 E++LVEGDSAGGSAKQGR+R QAILPLKGKILNVEK+ K+L S+E+ +ITA GCGI Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476 Query: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 ++ ++ ++LRYH IIIMTDADVDGSHI+TLL+TFFYR + ++E+GHV+IAQ PLYK K Sbjct: 477 -QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVFIAQAPLYKYK 535 Query: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598 KGK E Y+KD A+D + I ++ + L L+ + + +E Sbjct: 536 KGKTEIYLKDSVALDHFLIEHGINSVDIEGIGKN------DLMNLLKVARHYRYTLLELE 589 Query: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDK-----------EQHGSQW 647 +RY +L+ L + +A D + + + + + LN + H Sbjct: 590 KRY--NLLEVLRFLIETKDALSLDMKVLEKSILEKLEGLNYQILRSFATEESLHLHAQTP 647 Query: 648 KFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFI 707 K V N + NLF+ ++ H Y+++ + Sbjct: 648 KGLVEFNLDDNLFKDVLFEEAHYT---------------YQKLMEYN------------L 680 Query: 708 ERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTV 767 + E + +A E+ ++ +++G +IQRYKGLGEMNP LWETTM E+R ++++ + Sbjct: 681 DFLENKDILAFLEEVENY----AKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKI 736 Query: 768 KDAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 +D D +F+ MGD VEPRRAFI+ +A +D+ Sbjct: 737 EDLEKTDAVFSLCMGDEVEPRRAFIQAHAKDVKQLDV 773 >UniRef50_UPI00016C54E0 DNA gyrase subunit B n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C54E0 Length = 810 Score = 781 bits (2018), Expect = 0.0, Method: Composition-based stats. Identities = 332/819 (40%), Positives = 494/819 (60%), Gaps = 40/819 (4%) Query: 4 SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTI 63 Y +++ LK +R RPGMYIG+TD G+HH+V+EVV N++DEALAG CK I +T+ Sbjct: 10 GYTEDNLQTLKDAAHIRHRPGMYIGNTD-IEGMHHLVWEVVYNSVDEALAGFCKNIFITV 68 Query: 64 HADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVV 123 H+D S++V DDGRGIP G+ + G S E +T+ + GKF++++YK S GLHG+G + Sbjct: 69 HSDESITVSDDGRGIPVGVKADTGKSTLEEALTIAGSSGKFNNDAYKTSAGLHGMGAKAM 128 Query: 124 NALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK--TGTMVRFWPSLETFTNVTE 181 NALS+ I+R+G++++ +E G + L G K TGT + F P E F ++ Sbjct: 129 NALSEWCTAEIKRDGRVYKMEFEKGYATSKLEDLGPAPKGQTGTTITFKPDPEKFGDIL- 187 Query: 182 FEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIF 241 F+Y+ L R +++SFLN G+ + L D+R GK D FH E GI +VE LN+++ +P + Sbjct: 188 FDYDRLGTRFQQISFLNKGLKLALADERVGKSDTFHSERGIAEYVEVLNRSEQTNYP-LI 246 Query: 242 YFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEG 301 Y + + DG+ VEV Q+ G + CFTNN +DGGTHL+GFR +TR + Y K Sbjct: 247 YINKQIDGVTVEVCFQYTQGETKLEMCFTNNAYNKDGGTHLSGFRGGLTRAIGHYGKKAN 306 Query: 302 YSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYL 361 K ++ GDD REGL AV+++ P PKF SQTK KL S EV+ + E+L++YL Sbjct: 307 LFK--EIELRGDDFREGLTAVINISHPQPKFESQTKVKLTSPEVEGQTSSVVYEVLSDYL 364 Query: 362 LENPTDAKIVVGKIIDAARAREAARRAREMTR-RKGALDLAGLPGKLADCQERDPALSEL 420 NP +A+ + K++ A AR AA++AR+ + RK AL+ GLPGKL DC RD +EL Sbjct: 365 ERNPKEAERICKKVLLTAEARIAAKKARDAVKGRKDALNSGGLPGKLYDCSSRDRENTEL 424 Query: 421 YLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR 480 +LVEGDSAGGSA+ GR+R+ QAILPL+GK+LNVEKA+F+K+L + E++ LI+A+G I Sbjct: 425 FLVEGDSAGGSAESGRDREFQAILPLRGKVLNVEKAKFEKLLENNEISALISAVGVDIDN 484 Query: 481 DEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKG 540 E + K+RY IIIMTDADVDG HIRTLLLTFF+RQM +++E GHV++A+PPLYKV + Sbjct: 485 VE-DVSKVRYGKIIIMTDADVDGQHIRTLLLTFFFRQMRKLIEAGHVFVARPPLYKVTQK 543 Query: 541 KQEQYIKDDEAMDQYQISIALDGATLH---TNASAPALAGEALEKLVSEYNATQKMINRM 597 K+ ++I+ E M + L TL + A ++G+ L KL+ + + + + Sbjct: 544 KETRFIQSREEMVTQLTTRGLKNTTLRATQVDRPARDISGDELTKLLPLLDEAESAVVGL 603 Query: 598 ERRYPK------AMLKELIYQPTLTEADLSDEQ------TVTRWVNALVSELNDKEQHGS 645 ERR + L L E + + E V + AL EL + G Sbjct: 604 ERRGRNLDELLTRAVDGLFPTYNLYEREKNKEHWFRTTDEVAAFKQALADELKREPVVGE 663 Query: 646 QWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDA 705 + D + + +L + +++ G D + + I G E +R L+ D Sbjct: 664 DYTLDEWHDLK-SLNRAVTKLKAFGFDAADLVPLQRIAGRE--------PPVRYTLDHDG 714 Query: 706 FIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRV 765 + + S + + + + +G+++ R+KGLGEM+PE+LW TT+DP+ R +L+V Sbjct: 715 ------SNKSLVSLRELVIEIRRLGEKGIAVTRFKGLGEMDPEELWATTLDPQYRTLLKV 768 Query: 766 TVKDAIAADQLFTTLMGDAVEPRRAFIEENALK-AANID 803 T+ DA A+++F TLMG V+ R+AFI N+LK +ID Sbjct: 769 TLNDAFKAEEMFRTLMGKEVQDRKAFIFSNSLKSVEDID 807 >UniRef50_O50627 DNA gyrase subunit B n=82 Tax=cellular organisms RepID=GYRB_BACHD Length = 637 Score = 758 bits (1958), Expect = 0.0, Method: Composition-based stats. Identities = 330/630 (52%), Positives = 434/630 (68%), Gaps = 17/630 (2%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 +YD S I+VL+GL+AVRKRPGMYIG T GLHH+V+E+VDN+IDEA+AG C EI V Sbjct: 6 QAYDESQIQVLEGLEAVRKRPGMYIGST-SSRGLHHLVWEIVDNSIDEAMAGFCDEIGVV 64 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 I DNS++V D+GRGIP GIH + G A EVIMTVLHAGGKF YKVSGGLHGVG SV Sbjct: 65 IEEDNSITVTDNGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASV 124 Query: 123 VNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEF 182 VNALS LE+ + REGK+H Q + GVP A L V G T++TGT + F P + FT T F Sbjct: 125 VNALSTMLEVEVHREGKVHYQKFHRGVPAADLEVIGTTDRTGTKIHFKPDGDIFTETTVF 184 Query: 183 EYEILAKRLRELSFLNSGVSIRLRDKRDGKE-DHFHYEGGIKAFVEYLNKNKTPIHPNIF 241 EY+ LA RLREL+FLN G+ I++ D R+ ++ D FHYEGGI +FVE+LN+ + +H Sbjct: 185 EYDTLASRLRELAFLNKGLRIKITDMREEEKSDEFHYEGGIASFVEHLNRTRETLHETPI 244 Query: 242 YFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEG 301 + EK G+ VE+A+Q+NDGF NIY F NNI +GGTH +GF+ +TR +N Y K Sbjct: 245 HIEGEKQGVYVEIAVQYNDGFTSNIYSFANNINTHEGGTHESGFKTGLTRVINDYARKHN 304 Query: 302 YSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYL 361 K++ + TG+D REGL A++SVK+PDP+F QTK KL +SE ++ + E + +L Sbjct: 305 LFKESDPNLTGEDVREGLTAIISVKIPDPQFEGQTKTKLGNSEARTITDSLFTEHFSRFL 364 Query: 362 LENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELY 421 +E+P A+ +V K + A+RAREAA++ARE+TRRK AL+++ LPGKLADC RD ++SE+Y Sbjct: 365 IEHPQVARKLVDKGLMASRAREAAKKARELTRRKSALEVSSLPGKLADCSSRDASISEIY 424 Query: 422 LVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRD 481 +VEGDSAGGSAKQGR+R QAILPL+GKILNVEKAR DK+L++ E+ +ITALG GIG D Sbjct: 425 IVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILANNEIRAIITALGTGIG-D 483 Query: 482 EYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGK 541 +++ +K RYH IIIMTDADVDG+HIRTL+LTFFYR M ++E G+VYIAQPPLYKV++GK Sbjct: 484 DFDIEKARYHKIIIMTDADVDGAHIRTLILTFFYRYMRPLIEHGYVYIAQPPLYKVQQGK 543 Query: 542 QEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME--- 598 QY D + + + A G K + E N +Q M+ Sbjct: 544 DIQYAYGDAELQEIL-----------SQLPDKAKPGIQRYKGLGEMNPSQLWETTMDPGQ 592 Query: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTR 628 R + L++ + + E + D R Sbjct: 593 RTVLQVTLEDAMKADEIFEILMGDRVEPRR 622 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 64/187 (34%), Positives = 92/187 (49%), Gaps = 9/187 (4%) Query: 623 EQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFI 682 R L + + E+ + I+ + VD + I Sbjct: 455 NVEKARLDKILANNEIRAIITALGTGIGDDFDIEKARYHKIIIMTDADVDGAHI--RTLI 512 Query: 683 TGGEYRRICTLGEKLRGLLEEDAF--IERGERRQPV---ASFEQALDWLVKESRRGLSIQ 737 YR + L E + + +++G+ Q A ++ L L +++ G IQ Sbjct: 513 LTFFYRYMRPLIEHGYVYIAQPPLYKVQQGKDIQYAYGDAELQEILSQLPDKAKPG--IQ 570 Query: 738 RYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENAL 797 RYKGLGEMNP QLWETTMDP R +L+VT++DA+ AD++F LMGD VEPRR FI+ENA Sbjct: 571 RYKGLGEMNPSQLWETTMDPGQRTVLQVTLEDAMKADEIFEILMGDRVEPRRDFIQENAR 630 Query: 798 KAANIDI 804 N+DI Sbjct: 631 YVKNLDI 637 >UniRef50_B8FXX0 DNA gyrase subunit B n=70 Tax=Bacteria RepID=B8FXX0_DESHD Length = 644 Score = 744 bits (1922), Expect = 0.0, Method: Composition-based stats. Identities = 316/629 (50%), Positives = 430/629 (68%), Gaps = 14/629 (2%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 +N Y++ I+VL+GL+AVRKRPGMYIG T GLHH+V+E+VDN+IDEALAG+C I V Sbjct: 13 TNDYNAGQIEVLEGLEAVRKRPGMYIGST-SLRGLHHLVYEIVDNSIDEALAGYCDTIEV 71 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 TIH DNS+SV D+GRGIP IHP+ G A EV +TVLHAGGKF ++YKVSGGLHGVG+S Sbjct: 72 TIHKDNSISVVDNGRGIPVDIHPKLGKPAVEVALTVLHAGGKFSGSAYKVSGGLHGVGMS 131 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK--TGTMVRFWPSLETFTNV 179 VVNALS L + ++++G I+ Q + G + LAV G+ + TGT + F P E F + Sbjct: 132 VVNALSTWLHVEVRKDGNIYHQEFMRGKTKTELAVIGQVDPNQTGTTITFSPDPEIFEDT 191 Query: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPN 239 F ++ LA RLRELSFLN VSI L D R+ K++ +++ GGI FV+Y+N++K +HP Sbjct: 192 V-FLFDTLAHRLRELSFLNKKVSITLIDAREDKKEVYYHTGGIYDFVKYINRSKESLHPE 250 Query: 240 IFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDK 299 YF EKDG+ VEV++Q+NDG+ EN++ + NNI +GGTH +GF+AA+TR N Y K Sbjct: 251 PIYFEAEKDGVQVEVSMQYNDGYVENLFSYANNIHTHEGGTHESGFKAALTRVANDYARK 310 Query: 300 EGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAE 359 K + + +G+D REGL AV+SVKVP+P+F QTK KL +SE++S V+ E L+ Sbjct: 311 NNILKANEANLSGEDIREGLTAVISVKVPEPQFEGQTKTKLGNSEIRSIVDSITGEGLSA 370 Query: 360 YLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSE 419 + ENP K V+ K I A+RAREAAR+ARE+TRRK AL+++ LPGKLADC ++ L E Sbjct: 371 FFEENPAIGKKVIEKSIQASRAREAARKARELTRRKSALEVSALPGKLADCSWKEAELCE 430 Query: 420 LYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIG 479 +Y+VEGDSAGGSAKQGR+R+ QAILPL+GKILNVEKAR D++L + E+ +ITA+G GI Sbjct: 431 MYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDRILGNAEIRAMITAMGTGIS 490 Query: 480 RDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKK 539 D ++ +K RYH ++IMTDADVDG+HIR LLLTFF+R M ++E +VYIAQPPL+KVKK Sbjct: 491 ED-FDIEKARYHKLVIMTDADVDGAHIRILLLTFFFRYMKPLLENNYVYIAQPPLFKVKK 549 Query: 540 GKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMER 599 GK Y+ +E + + Q I D + + E L + ++ +R Sbjct: 550 GKDIHYVYSNEELAKLQDEIGRDRVEIQRYKGLGEMNAEQL---------WETTMDPAKR 600 Query: 600 RYPKAMLKELIYQPTLTEADLSDEQTVTR 628 + +++ I L + D R Sbjct: 601 TILQVTMEDAIKADELFTILMGDVVEPRR 629 Score = 152 bits (384), Expect = 6e-35, Method: Composition-based stats. Identities = 58/153 (37%), Positives = 82/153 (53%) Query: 652 HTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGE 711 + E+ + +V + VD + Y + + +++G+ Sbjct: 492 DFDIEKARYHKLVIMTDADVDGAHIRILLLTFFFRYMKPLLENNYVYIAQPPLFKVKKGK 551 Query: 712 RRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI 771 V S E+ + R + IQRYKGLGEMN EQLWETTMDP R +L+VT++DAI Sbjct: 552 DIHYVYSNEELAKLQDEIGRDRVEIQRYKGLGEMNAEQLWETTMDPAKRTILQVTMEDAI 611 Query: 772 AADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 AD+LFT LMGD VEPRR FI++NA N+D+ Sbjct: 612 KADELFTILMGDVVEPRREFIQDNAQYVRNLDV 644 >UniRef50_Q9X3Y6 DNA gyrase subunit B n=840 Tax=cellular organisms RepID=GYRB_BACAN Length = 640 Score = 724 bits (1869), Expect = 0.0, Method: Composition-based stats. Identities = 342/630 (54%), Positives = 443/630 (70%), Gaps = 17/630 (2%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 NSYD S I+VL+GL+AVRKRPGMYIG T G GLHH+V+E+VDN+IDEALAG+C EI V+ Sbjct: 9 NSYDESQIQVLEGLEAVRKRPGMYIGST-SGKGLHHLVWEIVDNSIDEALAGYCDEINVS 67 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 I DNS+ V D+GRGIP GI + G A EVIMTVLHAGGKF YKVSGGLHGVG SV Sbjct: 68 IEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASV 127 Query: 123 VNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEF 182 VNALS +LE+ + REGKIH Q YE G+P A L V G+T++TGT+ RF P E F T + Sbjct: 128 VNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDTDQTGTITRFKPDPEIFQETTVY 187 Query: 183 EYEILAKRLRELSFLNSGVSIRLRDKRDG-KEDHFHYEGGIKAFVEYLNKNKTPIHPNIF 241 E++ LA R+REL+FLN + + + DKR+ ++ FHYEGGIK++VE+LN++K PIH Sbjct: 188 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 247 Query: 242 YFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEG 301 Y KDGI VEV+LQ+N+G+ NIY FTNNI +GGTH GF+ A+TR +N Y K Sbjct: 248 YVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNS 307 Query: 302 YSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYL 361 K A + TG+D REGL A+VS+K P+P+F QTK KL +SE ++ E +E ++L Sbjct: 308 ILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFL 367 Query: 362 LENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELY 421 LENP A+ +V K AARAR AA++ARE+TRRK AL+++ LPGKLADC +DPA+SE+Y Sbjct: 368 LENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIY 427 Query: 422 LVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRD 481 +VEGDSAGGSAKQGR+R QAILPLKGKI+NVEKAR DK+LS+ EV T+ITA+G IG D Sbjct: 428 IVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGD 487 Query: 482 EYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGK 541 ++ +K RYH +IIMTDADVDG+HIRTLLLTFFYR M +I+E G++YIAQPPL+KV++GK Sbjct: 488 -FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKVQQGK 546 Query: 542 QEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME--- 598 + QY +++ +++ + A G K + E N TQ M+ Sbjct: 547 KIQYAYNEKELEKILAEL-----------PAQPKPGIQRYKGLGEMNPTQLWETTMDPEV 595 Query: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTR 628 R + L++ I E + D+ R Sbjct: 596 RSLLQVSLQDAIEADETFEILMGDKVEPRR 625 Score = 145 bits (365), Expect = 8e-33, Method: Composition-based stats. Identities = 60/185 (32%), Positives = 92/185 (49%), Gaps = 5/185 (2%) Query: 623 EQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFI 682 R L ++ + E+ + ++ + VD + + Sbjct: 458 NVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHI--RTLL 515 Query: 683 TGGEYRRICTLGEKLRGLLEEDAFIERGE-RRQPVASFEQALDWLVKE--SRRGLSIQRY 739 YR + + E + + + + ++ A E+ L+ ++ E ++ IQRY Sbjct: 516 LTFFYRYMRQIIEHGYIYIAQPPLFKVQQGKKIQYAYNEKELEKILAELPAQPKPGIQRY 575 Query: 740 KGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKA 799 KGLGEMNP QLWETTMDPE R +L+V+++DAI AD+ F LMGD VEPRR FI+ENA Sbjct: 576 KGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYV 635 Query: 800 ANIDI 804 N+DI Sbjct: 636 KNLDI 640 >UniRef50_Q2FUD6 DNA gyrase subunit B n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FUD6_METHJ Length = 675 Score = 716 bits (1848), Expect = 0.0, Method: Composition-based stats. Identities = 301/670 (44%), Positives = 424/670 (63%), Gaps = 57/670 (8%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 +SN+Y+S +IK+L+GL+ VR+RP MYIG TD GLHH+V+EVVDN+IDEALAG+C I Sbjct: 6 LSNTYNSENIKILRGLEPVRERPAMYIGSTD-SRGLHHLVYEVVDNSIDEALAGYCTHIQ 64 Query: 61 VTIHADNSVSVQDDGRGIPTG-IHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 119 V IH D SVSV+D+GRGIP + + +A E ++TVLHAGGKFD N+Y+VSGGLHGVG Sbjct: 65 VVIHQDGSVSVEDNGRGIPIDPMKDNDNKTALETVLTVLHAGGKFDKNTYQVSGGLHGVG 124 Query: 120 VSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGE-------------------- 159 VSVVNALS +L + ++G +R + G PQ L E Sbjct: 125 VSVVNALSVELTATVWKDGYEYRMFFSRGQPQTDLEKKEEDFEEIKDRYIKRYGSLPDNC 184 Query: 160 ------------TEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRD 207 ++ +GTM+RF P + F EF+Y+ILA RLREL+FLNSG++I + D Sbjct: 185 PETKEEFLNRYLSKISGTMIRFKPDSKIF-ETIEFDYDILAHRLRELAFLNSGITISIAD 243 Query: 208 KR----DGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFS--TEKDGIGVEVALQWNDG 261 +R + + F YEGGI +V YLN PIH ++ FS E+ + V++A Q+ Sbjct: 244 ERCEDLEECSEVFSYEGGISEYVRYLNHEAQPIHESVISFSRKDEEARVEVDIAFQYAAA 303 Query: 262 FQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIA 321 + E +Y + N++ ++GGTHL GFR+A+T+ +N + K +S GDD REGL A Sbjct: 304 YSEKVYTYVNSVNTKEGGTHLEGFRSALTKAINKMGKENKAIKDQNLSLKGDDVREGLTA 363 Query: 322 VVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARA 381 ++SV++ +P+F QTK KL +SEVK V+ + L EY E+P + +V K + A +A Sbjct: 364 IISVRMANPQFEGQTKMKLGNSEVKGIVDSLVYASLCEYFEEHPKELAAIVDKAVLAYQA 423 Query: 382 REAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQ 441 REAAR+A+E+ RRK L+ +GLPGKLADC ER SE+Y+VEGDSAGGSAKQGR+R+ Q Sbjct: 424 REAARKAKELARRKSTLESSGLPGKLADCSERSAEKSEIYIVEGDSAGGSAKQGRDRRFQ 483 Query: 442 AILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADV 501 AILPL+GKILNVEKA K+L + E+ LI+A+G G+G + ++ +K RYH IIIMTDADV Sbjct: 484 AILPLRGKILNVEKATVHKILKNNEIQALISAIGTGVG-ESFDIEKARYHHIIIMTDADV 542 Query: 502 DGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIAL 561 DG+HI TLL+TFF+R + ++E G++Y+AQPPLY++ KGKQE+Y +E M + + Sbjct: 543 DGAHISTLLMTFFFRYLQPLIEAGYIYLAQPPLYRIAKGKQEKYAYTEEEMKEILQEMGE 602 Query: 562 DGATLHTNASAPALAGEALEKLVSEYNATQKMINRME---RRYPKAMLKELIYQPTLTEA 618 G + K + E NA+Q M+ R + ++++ Y + E Sbjct: 603 KGVNVQRY------------KGLGEMNASQLWATTMDPETRVLKRVVIEDAAYANEIFEK 650 Query: 619 DLSDEQTVTR 628 + D+ T R Sbjct: 651 LMGDDVTARR 660 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 49/153 (32%), Positives = 80/153 (52%) Query: 652 HTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGE 711 + E+ + I+ + VD + Y + + I +G+ Sbjct: 523 SFDIEKARYHHIIIMTDADVDGAHISTLLMTFFFRYLQPLIEAGYIYLAQPPLYRIAKGK 582 Query: 712 RRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI 771 + + + E+ + L + +G+++QRYKGLGEMN QLW TTMDPE+R + RV ++DA Sbjct: 583 QEKYAYTEEEMKEILQEMGEKGVNVQRYKGLGEMNASQLWATTMDPETRVLKRVVIEDAA 642 Query: 772 AADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 A+++F LMGD V RR FI+ +A + N+DI Sbjct: 643 YANEIFEKLMGDDVTARRDFIKRHAKEVTNLDI 675 >UniRef50_Q04WF3 DNA gyrase subunit B n=20 Tax=Bacteria RepID=Q04WF3_LEPBJ Length = 641 Score = 708 bits (1828), Expect = 0.0, Method: Composition-based stats. Identities = 321/628 (51%), Positives = 448/628 (71%), Gaps = 19/628 (3%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 SY +S IK+L+GL+AVRKRPGMYIG T D TGLH MV+EVVDN++DEA+AGHC EI ++ Sbjct: 6 TSYSASQIKILEGLEAVRKRPGMYIG-TQDETGLHKMVYEVVDNSVDEAMAGHCTEIRIS 64 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 I +N + V+D+GRGIP IHP++ +S EV+MT+LHAGGKF++++YKVSGGLHGVGVSV Sbjct: 65 ILPNNIIEVKDNGRGIPVDIHPDKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSV 124 Query: 123 VNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEF 182 VNALS+ LE+ + ++GKI+ Q YE G+P +P+ + G++ + GT+VRF P FT V +F Sbjct: 125 VNALSEYLEVEVHQKGKIYTQKYEKGIPVSPVEIKGDSSERGTIVRFKPDATIFTTV-DF 183 Query: 183 EYEILAKRLRELSFLNSGVSIRLRDKRDGKE------DHFHYEGGIKAFVEYLNKNKTPI 236 +++IL+ R REL+FLN G+ + + D+R G E + F + GGI +FVE++N+NK P+ Sbjct: 184 QFDILSARFRELAFLNKGLVLIVEDRRRGAEGENLLRNEFQFSGGIVSFVEHINENKHPM 243 Query: 237 HPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAY 296 H + +F KD + E+++Q+++ + ENI+CFTNNI GGTHL GFRAA+TRTLN + Sbjct: 244 H-KVIHFERNKDDVLAEISIQYSETYTENIFCFTNNINNNLGGTHLEGFRAALTRTLNDF 302 Query: 297 MDKEG-YSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNE 355 + K+ SKK +G+D +EGL AV+S+K+P P+F+SQTK+KLV++E+K ++ +E Sbjct: 303 LKKDTTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLVNAEIKGIMQTLSSE 362 Query: 356 LLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDP 415 L + ENP K ++ K I +A+AREAAR+AR++TRRK L+ GLPGKLADC E+DP Sbjct: 363 GLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGGGLPGKLADCSEKDP 422 Query: 416 ALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALG 475 A SELYLVEGDSAGGSAKQGR+R QAILPLKGKILNVEKAR DK+LSS+E+ L++ALG Sbjct: 423 AFSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILSSEEIRILVSALG 482 Query: 476 CGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLY 535 GIG DE+N +K+RYH I+IMTDAD+DGSHIRTLLLTFF+R M ++E+G++Y+AQPPLY Sbjct: 483 TGIGEDEFNINKIRYHKIMIMTDADIDGSHIRTLLLTFFFRYMRPVIEKGYLYVAQPPLY 542 Query: 536 KVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMIN 595 +K GK Y D+ ++ ++ + + + E L + ++ Sbjct: 543 LIKHGKNSTYAYSDKEKEELLKNVGTEKVVIQRYKGLGEMNPEQL---------WETTMD 593 Query: 596 RMERRYPKAMLKELIYQPTLTEADLSDE 623 R K L + + + DE Sbjct: 594 PSNRVVLKVKLDDFVEAEETFNILMGDE 621 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 54/155 (34%), Positives = 78/155 (50%) Query: 650 DVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIER 709 + N + + I+ + +D + Y R L I+ Sbjct: 487 EDEFNINKIRYHKIMIMTDADIDGSHIRTLLLTFFFRYMRPVIEKGYLYVAQPPLYLIKH 546 Query: 710 GERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKD 769 G+ S ++ + L + IQRYKGLGEMNPEQLWETTMDP +R +L+V + D Sbjct: 547 GKNSTYAYSDKEKEELLKNVGTEKVVIQRYKGLGEMNPEQLWETTMDPSNRVVLKVKLDD 606 Query: 770 AIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 + A++ F LMGD V+PR+ FIE NA K AN+D+ Sbjct: 607 FVEAEETFNILMGDEVQPRKQFIEINAAKVANLDL 641 >UniRef50_Q6GKU0 DNA gyrase subunit B n=143 Tax=cellular organisms RepID=GYRB_STAAR Length = 644 Score = 700 bits (1807), Expect = 0.0, Method: Composition-based stats. Identities = 317/631 (50%), Positives = 420/631 (66%), Gaps = 15/631 (2%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 +++Y + I+VL+GL+AVRKRPGMYIG T + GLHH+V+E+VDN+IDEALAG+ +I V Sbjct: 11 TDNYGAGQIQVLEGLEAVRKRPGMYIGSTSE-RGLHHLVWEIVDNSIDEALAGYANQIEV 69 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 I DN + V D+GRGIP I + G A EVI+TVLHAGGKF YKVSGGLHGVG S Sbjct: 70 VIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLHGVGSS 129 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTE 181 VVNALSQ LE+ + R I+ Q Y+ GVPQ L G T+KTGT++RF E FT T Sbjct: 130 VVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVGTTDKTGTVIRFKADGEIFTETTV 189 Query: 182 FEYEILAKRLRELSFLNSGVSIRLRDKRDG---KEDHFHYEGGIKAFVEYLNKNKTPIHP 238 + YE L +R+REL+FLN G+ I LRD+RD +ED +HYEGGIK++VE LN+NK PIH Sbjct: 190 YNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYEGGIKSYVELLNENKEPIHD 249 Query: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Y KD I VE+A+Q+N G+ N+ + NNI +GGTH GF+ A+TR LN+Y Sbjct: 250 EPIYIHQSKDDIEVEIAIQYNSGYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGL 309 Query: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 K+ K +G+D REG+ A++S+K DP+F QTK KL +SEV+ V++ +E Sbjct: 310 SSKIMKEDKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFE 369 Query: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 +L ENP A+ VV K I AARAR AA++ARE+TRRK ALD+A LPGKLADC + P Sbjct: 370 RFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEEC 429 Query: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 E++LVEGDSAGGS K GR+ + QAILPL+GKILNVEKAR D++L++ E+ +ITA G GI Sbjct: 430 EIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGI 489 Query: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 G D ++ K RYH I+IMTDADVDG+HIRTLLLTFFYR M ++E G+VYIAQPPLYK+ Sbjct: 490 GGD-FDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLT 548 Query: 539 KGKQEQYIKDDEAMDQYQISIALD-GATLHTNASAPALAGEALEKLVSEYNATQKMINRM 597 +GKQ+ Y+ +D +D+ + + ++ + + L + +N Sbjct: 549 QGKQKYYVYNDRELDKLKSELNPTPKWSIARYKGLGEMNADQL---------WETTMNPE 599 Query: 598 ERRYPKAMLKELIYQPTLTEADLSDEQTVTR 628 R + L++ I E + D R Sbjct: 600 HRALLQVKLEDAIEADQTFEMLMGDVVENRR 630 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 59/156 (37%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 652 HTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGE 711 + + + IV + VD + + YR + L E + + + + Sbjct: 492 DFDLAKARYHKIVIMTDADVDGAHI--RTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQ 549 Query: 712 RRQPVASF-EQALDWLVKESRR--GLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVK 768 +Q + ++ LD L E SI RYKGLGEMN +QLWETTM+PE R +L+V ++ Sbjct: 550 GKQKYYVYNDRELDKLKSELNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLE 609 Query: 769 DAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 DAI ADQ F LMGD VE RR FIE+NA+ AN+D Sbjct: 610 DAIEADQTFEMLMGDVVENRRQFIEDNAV-YANLDF 644 >UniRef50_C7QFM2 DNA gyrase subunit B n=8 Tax=Bacteria RepID=C7QFM2_CATAD Length = 661 Score = 690 bits (1781), Expect = 0.0, Method: Composition-based stats. Identities = 298/639 (46%), Positives = 406/639 (63%), Gaps = 25/639 (3%) Query: 5 YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIH 64 Y++ SI VL+GL+AVRKRPGMYIG T + GLHH+V+E+VDN++DEA+AG+ I V + Sbjct: 18 YNADSISVLEGLEAVRKRPGMYIGSTGE-RGLHHLVYEIVDNSVDEAMAGYADTIEVWLL 76 Query: 65 ADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN 124 AD V V D+GRGIP GI+ + G SA EV+MT+LHAGGKF D YKVSGGLHGVGVSVVN Sbjct: 77 ADGGVKVVDNGRGIPVGINTKTGKSALEVVMTILHAGGKFGDGGYKVSGGLHGVGVSVVN 136 Query: 125 ALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEY 184 ALS ++E+ + +G + Q+Y+HGVP+ + G TGT FW ++ F T + + Sbjct: 137 ALSSRVEVEVHTDGFVWNQVYKHGVPETEVQKGGPAADTGTSTIFWADVDIF-ETTVYSF 195 Query: 185 EILAKRLRELSFLNSGVSIRLRDKRDGKEDH--------FHYEGGIKAFVEYLNKNK-TP 235 E L++R +E++FLN G++I L D+R D +H EGGI FV ++N K P Sbjct: 196 ETLSRRFQEMAFLNKGLTISLTDERPEFRDENGEQRSVKYHAEGGIADFVRHINSRKGEP 255 Query: 236 IHPNIFYFSTEKDGIGV--EVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTL 293 +HPN+ F E + E+ALQWN + E+IY F NNI GGTH GFRAA+T + Sbjct: 256 VHPNVIDFEGEDKDRTLAAEIALQWNSQYSESIYTFANNINTHGGGTHEEGFRAALTTLI 315 Query: 294 NAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQM 353 N Y + K+ + G+D REGL +VSVK+ +P+F QTKDKL + E K+ V++ + Sbjct: 316 NKYARDQKLLKEKDDNLAGEDIREGLTTIVSVKLAEPQFEGQTKDKLGNPEAKTFVQRLV 375 Query: 354 NELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQER 413 E L E+L ENP +A+ V+ K I A+ AR AAR+ARE+TRRKG L+ + LPGKL+DCQ Sbjct: 376 YEKLGEWLEENPNEAREVIRKTIQASTARMAARKARELTRRKGLLESSSLPGKLSDCQSN 435 Query: 414 DPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITA 473 DP +E+++VEGDSAGGSA+ GR+ QAILP++GKILNVEKAR DK+L + EV LI+A Sbjct: 436 DPTKTEIFIVEGDSAGGSARSGRDPMTQAILPIRGKILNVEKARIDKVLQNTEVQALISA 495 Query: 474 LGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPP 533 LG G+ D+++ +LRYH II+M DADVDG+HI TLLLT +R M +VE GHVY+A PP Sbjct: 496 LGTGVH-DDFDISRLRYHKIILMADADVDGAHINTLLLTLLFRFMKPLVEAGHVYLAAPP 554 Query: 534 LYKVKK-GKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQK 592 LYKVK Y D DQ + + + + G + E NA + Sbjct: 555 LYKVKWTNNDFNYAYSDRERDQ-LLEAGVGAGKRRKDETVQRFKG------LGEMNAEEL 607 Query: 593 MINRMERRY---PKAMLKELIYQPTLTEADLSDEQTVTR 628 I M+R + + L + L + ++ R Sbjct: 608 RITTMDREHRILRQVTLDDAAQADDLFSVLMGEDVEARR 646 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 75/188 (39%), Gaps = 6/188 (3%) Query: 623 EQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFI 682 R L + + + + I+ + VD + Sbjct: 474 NVEKARIDKVLQNTEVQALISALGTGVHDDFDISRLRYHKIILMADADVDGAHINTLLLT 533 Query: 683 TGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKES------RRGLSI 736 + + + ++ A ++ D L++ R+ ++ Sbjct: 534 LLFRFMKPLVEAGHVYLAAPPLYKVKWTNNDFNYAYSDRERDQLLEAGVGAGKRRKDETV 593 Query: 737 QRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENA 796 QR+KGLGEMN E+L TTMD E R + +VT+ DA AD LF+ LMG+ VE RR FI+ NA Sbjct: 594 QRFKGLGEMNAEELRITTMDREHRILRQVTLDDAAQADDLFSVLMGEDVEARRNFIQRNA 653 Query: 797 LKAANIDI 804 +DI Sbjct: 654 KDVRFLDI 661 >UniRef50_Q9A0L0 DNA gyrase subunit B n=56 Tax=cellular organisms RepID=GYRB_STRP1 Length = 650 Score = 689 bits (1779), Expect = 0.0, Method: Composition-based stats. Identities = 306/631 (48%), Positives = 408/631 (64%), Gaps = 12/631 (1%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 YD+S I+VL+GL+AVR RPGMYIG T GLHH+V+E+VDN+IDEALAG I V Sbjct: 13 QEYDASQIQVLEGLEAVRMRPGMYIGSTAK-EGLHHLVWEIVDNSIDEALAGFASHIKVF 71 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 I ADNS++V DDGRGIP I + G A E + TVLHAGGKF YKVSGGLHGVG SV Sbjct: 72 IEADNSITVVDDGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSSV 131 Query: 123 VNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEF 182 VNALS +L++ + + G+IH Q ++ G A L V G T+ TGT V F P E FT T+F Sbjct: 132 VNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVIGTTDVTGTTVHFTPDPEIFTETTQF 191 Query: 183 EYEILAKRLRELSFLNSGVSIRLRDKRDG--KEDHFHYEGGIKAFVEYLNKNKTPIHPNI 240 +Y +LAKR++EL+FLN G+ I + DKR G +E+HF YEGGI ++VE+LN K I Sbjct: 192 DYSVLAKRIQELAFLNRGLKISITDKRSGMEQEEHFLYEGGIGSYVEFLNDKKDVIFETP 251 Query: 241 FYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKE 300 Y E +GI VEVA+Q+ +QE + F NNI +GGTH GFRAA+TR +N Y K Sbjct: 252 IYTDGELEGIAVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFRAALTRVINDYAKKN 311 Query: 301 GYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEY 360 K+ + + TG+D REGL AV+SVK P+P+F QTK KL +SEV + +E + Sbjct: 312 KILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFQRF 371 Query: 361 LLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSEL 420 LLENP A+ +V K I A++AR AA+RARE+TR+K L+++ LPGKLADC D +EL Sbjct: 372 LLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDANQNEL 431 Query: 421 YLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR 480 ++VEGDSAGGSAK GRNR+ QAILP++GKILNVEKA DK+L+++E+ +L TA+G G G Sbjct: 432 FIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGFGA 491 Query: 481 DEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKG 540 D ++ K RY ++IMTDADVDG+HIRTLLLT YR M ++E G+VYIAQPP+Y VK G Sbjct: 492 D-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVG 550 Query: 541 KQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME-- 598 + + + Q+ AL+ ++ + K + E + Q M+ Sbjct: 551 SEIKEYIQPGIDQEDQLKTALEKYSI-----GRSKPTVQRYKGLGEMDDHQLWETTMDPE 605 Query: 599 -RRYPKAMLKELIYQPTLTEADLSDEQTVTR 628 R + + + + + + D R Sbjct: 606 NRLMARVTVDDAAEADKVFDMLMGDRVEPRR 636 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 61/181 (33%), Positives = 87/181 (48%), Gaps = 12/181 (6%) Query: 633 LVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICT 692 L +E F + + ++ +V + VD + + YR + Sbjct: 473 LANEEIRSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHI--RTLLLTLIYRFMRP 530 Query: 693 LGEKLRGLLEEDAF--IERGERRQPVASF-----EQALDWLVK--ESRRGLSIQRYKGLG 743 + E + + ++ G + +Q L K R ++QRYKGLG Sbjct: 531 VLEAGYVYIAQPPIYGVKVGSEIKEYIQPGIDQEDQLKTALEKYSIGRSKPTVQRYKGLG 590 Query: 744 EMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANID 803 EM+ QLWETTMDPE+R M RVTV DA AD++F LMGD VEPRR FIEENA+ + +D Sbjct: 591 EMDDHQLWETTMDPENRLMARVTVDDAAEADKVFDMLMGDRVEPRRDFIEENAV-YSTLD 649 Query: 804 I 804 I Sbjct: 650 I 650 >UniRef50_A5TY73 DNA gyrase subunit B n=542 Tax=Bacteria RepID=GYRB_MYCTA Length = 675 Score = 685 bits (1769), Expect = 0.0, Method: Composition-based stats. Identities = 299/662 (45%), Positives = 409/662 (61%), Gaps = 47/662 (7%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 + Y ++SI +L+GL+AVRKRPGMYIG T + GLHH+++EVVDNA+DEA+AG+ + V Sbjct: 10 DEYGAASITILEGLEAVRKRPGMYIGSTGE-RGLHHLIWEVVDNAVDEAMAGYATTVNVV 68 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 + D V V DDGRGIP H G+ +V+MT LHAGGKFD ++Y +SGGLHGVGVSV Sbjct: 69 LLEDGGVEVADDGRGIPVATHA-SGIPTVDVVMTQLHAGGKFDSDAYAISGGLHGVGVSV 127 Query: 123 VNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEF 182 VNALS +LE+ I+R+G Q+YE P L T+KTG+ VRFW F TE+ Sbjct: 128 VNALSTRLEVEIKRDGYEWSQVYEKSEPLG-LKQGAPTKKTGSTVRFWADPAVF-ETTEY 185 Query: 183 EYEILAKRLRELSFLNSGVSIRLRDKRDGKED---------------------------- 214 ++E +A+RL+E++FLN G++I L D+R +++ Sbjct: 186 DFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASERAAESTAPHK 245 Query: 215 ----HFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFT 270 FHY GG+ FV+++N+ K IH +I FS + G VE+A+QWN G+ E+++ F Sbjct: 246 VKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVEIAMQWNAGYSESVHTFA 305 Query: 271 NNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDP 330 N I +GGTH GFR+A+T +N Y K + TGDD REGL AV+SVKV +P Sbjct: 306 NTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREGLAAVISVKVSEP 365 Query: 331 KFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRARE 390 +F QTK KL ++EVKS V++ NE L + NPTDAK+VV K + +A+AR AAR+ARE Sbjct: 366 QFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSSAQARIAARKARE 425 Query: 391 MTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKI 450 + RRK A D+ GLPGKLADC+ DP SELY+VEGDSAGGSAK GR+ QAILPL+GKI Sbjct: 426 LVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGKI 485 Query: 451 LNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLL 510 +NVEKAR D++L + EV +ITALG GI DE++ KLRYH I++M DADVDG HI TLL Sbjct: 486 INVEKARIDRVLKNTEVQAIITALGTGIH-DEFDIGKLRYHKIVLMADADVDGQHISTLL 544 Query: 511 LTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQE-QYIKDDEAMDQYQISIALDGATLHTN 569 LT +R M ++E GHV++AQPPLYK+K + + ++ D D + G ++ Sbjct: 545 LTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGLKAGKKINKE 604 Query: 570 ASAPALAGEALEKLVSEYNATQKMINRME---RRYPKAMLKELIYQPTLTEADLSDEQTV 626 G + E +A + M+ R + L + L + ++ Sbjct: 605 DGIQRYKG------LGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELFSILMGEDVDA 658 Query: 627 TR 628 R Sbjct: 659 RR 660 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 42/106 (39%), Positives = 64/106 (60%), Gaps = 7/106 (6%) Query: 706 FIERGERRQPVASFEQALDWLVKES---RRGLS----IQRYKGLGEMNPEQLWETTMDPE 758 ++ A ++ D L++ + ++ IQRYKGLGEM+ ++LWETTMDP Sbjct: 570 KLKWQRSDPEFAYSDRERDGLLEAGLKAGKKINKEDGIQRYKGLGEMDAKELWETTMDPS 629 Query: 759 SRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 R + +VT+ DA AAD+LF+ LMG+ V+ RR+FI NA +D+ Sbjct: 630 VRVLRQVTLDDAAAADELFSILMGEDVDARRSFITRNAKDVRFLDV 675 >UniRef50_Q1V1K8 DNA topoisomerase (ATP-hydrolyzing) chain B (DNA gyrase B) n=2 Tax=Candidatus Pelagibacter ubique RepID=Q1V1K8_PELUB Length = 685 Score = 676 bits (1745), Expect = 0.0, Method: Composition-based stats. Identities = 324/634 (51%), Positives = 429/634 (67%), Gaps = 38/634 (5%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 +++Y + SIKVLKGL+AVRKRPGMYIGDTDDGTGLHHMV+EVVDN+IDEALAGHCK I V Sbjct: 4 NSTYQADSIKVLKGLEAVRKRPGMYIGDTDDGTGLHHMVYEVVDNSIDEALAGHCKNIDV 63 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 I++D +++V+DDGRGIP +H E +SAAEVIMT LHAGGKFD +SYKVSGGLHGVGVS Sbjct: 64 KINSDGTITVRDDGRGIPVDMHKGEKMSAAEVIMTQLHAGGKFDHDSYKVSGGLHGVGVS 123 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTE 181 VVNALS+KL+L I R+G + ++ G +APL V G++++TGT + F PS E F+++ + Sbjct: 124 VVNALSEKLKLEIDRDGNRYFIEFKDGASKAPLKVIGKSKETGTQITFLPSKEIFSSI-K 182 Query: 182 FEYEILAKRLRELSFLNSGVSIRLRDKRDGKED--HFHYEGGIKAFVEYL--------NK 231 F I+ KR+REL+FLN G+ I + D KE F ++GG+ FV++L NK Sbjct: 183 FTPSIIIKRMRELAFLNKGIKITVNDLNQKKEKIIVFKFDGGVLEFVDFLDEKREKLVNK 242 Query: 232 NKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTR 291 + Y +KD I +E +L+WN + E+IY +TNNI Q+DGGTHL GFR+A+TR Sbjct: 243 TGNDLFKKPIYIEGKKDNIEIECSLKWNASYGEDIYPYTNNIYQKDGGTHLLGFRSALTR 302 Query: 292 TLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQ 351 +N Y + KK K++ +GDD +EGL V+S K+PDPKFSSQTKDKLVSSEV+ VE Sbjct: 303 VINKYATEHNLLKKNKLTISGDDIKEGLTCVISAKIPDPKFSSQTKDKLVSSEVRMIVES 362 Query: 352 QMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQ 411 ++E L+ + +NPT +KI++ K++ AA AR+ AR+ARE RRKGAL+L+GLPGKLADCQ Sbjct: 363 IVSEKLSIWFDQNPTLSKIILAKVMQAALARDVARKARENVRRKGALELSGLPGKLADCQ 422 Query: 412 ERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNV------------------ 453 +EL++VEGDSAGGSAKQGRNR NQA+LPL+GKILN Sbjct: 423 IGKQEGTELFIVEGDSAGGSAKQGRNRSNQAVLPLRGKILNTYVEEIVLKKNSNRDGSEH 482 Query: 454 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTF 513 KM+SS EV TLI ALG ++ + LRY IIIMTDADVDGSHIR LLLTF Sbjct: 483 RTKSLSKMMSSNEVVTLINALGLDPKVEDIDLKDLRYGKIIIMTDADVDGSHIRALLLTF 542 Query: 514 F-YRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASA 572 F + +++E GHVY+AQPPL+K+ KG + YIKD++ ++ Y + + + Sbjct: 543 FNNKPFNKLIENGHVYLAQPPLFKINKGTKGIYIKDEKELEDYILKNNKELQKIKKGTKE 602 Query: 573 PALAGEALE--------KLVSEYNATQKMINRME 598 A E + K + E N + ++ Sbjct: 603 FTKAYEDEKSRMSIQRFKGLGEMNPEELWNTTLD 636 Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats. Identities = 56/218 (25%), Positives = 92/218 (42%), Gaps = 15/218 (6%) Query: 588 NATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQW 647 + T+ + M ++ L P + + DL D + + + D + GS Sbjct: 482 HRTKSLSKMMSSNEVVTLINALGLDPKVEDIDLKDLRY------GKIIIMTDADVDGSHI 535 Query: 648 KFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFI 707 + + T F ++ + T G Y + E D + Sbjct: 536 RALLLTFFNNKPFNKLIENGHVYLAQPPLFKINKGTKGIYIKDEKELE--------DYIL 587 Query: 708 ERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTV 767 + + Q + + ++ + +SIQR+KGLGEMNPE+LW TT+DPE+R +L+V Sbjct: 588 KNNKELQKIKKGTKEFTKAYEDEKSRMSIQRFKGLGEMNPEELWNTTLDPETRNLLQVQY 647 Query: 768 K-DAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 D L TLMG+ V R+ FI NA+ N+DI Sbjct: 648 SKDIKKDQDLIHTLMGNDVALRKDFIVSNAINVQNLDI 685 >UniRef50_C7M118 DNA gyrase subunit B n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M118_ACIFD Length = 647 Score = 675 bits (1741), Expect = 0.0, Method: Composition-based stats. Identities = 289/630 (45%), Positives = 401/630 (63%), Gaps = 17/630 (2%) Query: 4 SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTI 63 SY ++ I VL+GL+ VR RPGMYIG T +GLHH+V+EVVDNA+DE +AG C EI VTI Sbjct: 15 SYTAADIVVLEGLEHVRLRPGMYIGSTG-PSGLHHLVWEVVDNAVDEVMAGACTEIDVTI 73 Query: 64 HADNSVSVQDDGRGIPTGIHP-EEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 AD V+D+GRGIP HP + SAAEV++T L+AGGKF YKVSGGLHGVGVSV Sbjct: 74 LADGGCRVEDNGRGIPVDPHPSDPSKSAAEVVLTQLNAGGKFGTGGYKVSGGLHGVGVSV 133 Query: 123 VNALSQKLELVIQREGKIHRQIY-EHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180 VNALS +L L + R+G +R + + G P PL G + + GT+V FWP F + T Sbjct: 134 VNALSARLVLEVHRDGSTYRMEFVKGGTPTGPLERIGSSGGRRGTVVTFWPDPTIFED-T 192 Query: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDH--FHYEGGIKAFVEYLNKNKTPIHP 238 EF + + +RL+ ++FLN GV +R RD+R G+E F Y GGI FV +LN+ K P+ Sbjct: 193 EFSAQRILERLQVIAFLNKGVVVRFRDERPGREHEQTFSYAGGIVDFVRHLNEPKGPLFA 252 Query: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 + Y++ ++ + VEVA WN F E ++ F N I +GG H GFR A+T+ +N Y Sbjct: 253 KVGYYAASEEDMEVEVAFSWNTTFYETLFTFANGISTEEGGMHAEGFRKALTQVINRYAR 312 Query: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 K+ + G+D REG+ +VSV++ +P+F QTK KL + V+S VE+ NE LA Sbjct: 313 ARNLLKERDENLEGNDIREGMTTIVSVRLVNPQFEGQTKTKLGNVSVRSFVERVTNEHLA 372 Query: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 +L ENP +A+ +V K I A RAR AAR+ARE+TRRK L+ AGLPGKL DC RDP+ S Sbjct: 373 TWLEENPREAQAIVQKAIVAQRARLAARQARELTRRKSGLESAGLPGKLTDCTSRDPSES 432 Query: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 EL++VEG+SAGG+ +GR+ K QA+LP++GKILNVE+AR DKMLS+QE+ +LI A+G G+ Sbjct: 433 ELFIVEGNSAGGTTIKGRDPKTQAVLPIRGKILNVERARLDKMLSNQEIQSLIAAIGAGV 492 Query: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 G DE++ K RYH +II+ DAD DGSHIRTLLLTFF+RQM +VE G VY AQPPLY Sbjct: 493 G-DEFDIKKARYHKVIILADADPDGSHIRTLLLTFFFRQMRPLVEAGMVYAAQPPLYSTL 551 Query: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598 G ++ YIK++ ++ + + + L + + ++ + ++ Sbjct: 552 LGTEKVYIKNEAERLRFLEAHPNHKKPFLRLKGLGEMDFDELRD--TTLHQDRRTLLKVT 609 Query: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTR 628 +++ + + D+ R Sbjct: 610 -------IEQAAIADEVCSVLMGDDVEQRR 632 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 42/184 (22%), Positives = 76/184 (41%), Gaps = 4/184 (2%) Query: 623 EQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFI 682 R L ++ + ++ + ++ + D + + Sbjct: 466 NVERARLDKMLSNQEIQSLIAAIGAGVGDEFDIKKARYHKVIILADADPDGSHI--RTLL 523 Query: 683 TGGEYRRICTLGEKLRGLLEEDAFIER--GERRQPVASFEQALDWLVKESRRGLSIQRYK 740 +R++ L E + G + + + + L +L R K Sbjct: 524 LTFFFRQMRPLVEAGMVYAAQPPLYSTLLGTEKVYIKNEAERLRFLEAHPNHKKPFLRLK 583 Query: 741 GLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAA 800 GLGEM+ ++L +TT+ + R +L+VT++ A AD++ + LMGD VE RR FI+ENA A Sbjct: 584 GLGEMDFDELRDTTLHQDRRTLLKVTIEQAAIADEVCSVLMGDDVEQRRRFIQENAGDAR 643 Query: 801 NIDI 804 ID Sbjct: 644 FIDF 647 >UniRef50_P21558 DNA gyrase subunit B n=61 Tax=cellular organisms RepID=GYRB_HALSQ Length = 639 Score = 674 bits (1740), Expect = 0.0, Method: Composition-based stats. Identities = 312/634 (49%), Positives = 406/634 (64%), Gaps = 22/634 (3%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 N Y + I+VL+GL+AVRKRP MYIG TD GLHH+V+EVVDN+IDEALAGHC I V Sbjct: 5 NEYGAGQIQVLEGLEAVRKRPAMYIGSTD-SRGLHHLVYEVVDNSIDEALAGHCDAIEVA 63 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 +H D SVSV D+GRGIP G H + A EVIMTVLHAGGKFD+ SY+VSGGLHGVGV+V Sbjct: 64 LHEDGSVSVTDNGRGIPVGTHEQYDRPALEVIMTVLHAGGKFDNKSYQVSGGLHGVGVTV 123 Query: 123 VNALSQKLELVIQREGKIHRQIYEHGVPQAP----LAVTGETEKTGTMVRFWPSLETFTN 178 VNALS +LE+ ++ +G + +E G PQ + E TGT +RFWP F Sbjct: 124 VNALSSELEVEVKHDGAVWTHRFEVGEPQVEEFERVRDLEPGEDTGTTIRFWPDDGIF-E 182 Query: 179 VTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHP 238 TEF+++ L RLREL+FLNSGV I L D+R + F +EGGI+ FVEYLN+ KT +H Sbjct: 183 TTEFDFKTLENRLRELAFLNSGVEISLSDERTDESSTFLFEGGIREFVEYLNETKTALHD 242 Query: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 ++ Y+ E +GI VE+A+Q D Q +I+ F NNI R+GGTHL GF+ A+TR +N Y + Sbjct: 243 DVIYYDDESEGIEVEIAMQATDELQGSIHAFANNINTREGGTHLTGFKTALTRVVNDYAN 302 Query: 299 KEGYSKKAK-VSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELL 357 + G+D REGL AV+SVK PDP+F QTK KL +SEV+ VE ++ L Sbjct: 303 SHDMLDDLDGDNLRGEDVREGLTAVISVKHPDPQFEGQTKTKLGNSEVRGIVESVTHQQL 362 Query: 358 AEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPAL 417 + ENP A ++ K ++AARAR+AA++A E+TRRK AL+ LPGKLADCQ RDP+ Sbjct: 363 GTFFEENPDTATAIISKAVEAARARKAAKQAEELTRRKSALESTSLPGKLADCQSRDPSE 422 Query: 418 SELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCG 477 SEL++VEGDSAGGSAKQGR+RK QAILPLKGKILNVEK R D++L + E+ LITA+G G Sbjct: 423 SELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKHRLDRILENDEIRALITAIGGG 482 Query: 478 IGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKV 537 +G DE++ +K RY +I+MTDADVDG+HIRTLLLT YR M ++E G+VY AQPPLY+V Sbjct: 483 VG-DEFDIEKARYQRLILMTDADVDGAHIRTLLLTLLYRHMRPLIEAGYVYAAQPPLYRV 541 Query: 538 KKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRM 597 + D+ D+ T + E N Q M Sbjct: 542 RYRGNTYDAMDEAERDRIIEEECNGNPTQVQRFKG-----------LGEMNPDQLWDTTM 590 Query: 598 ---ERRYPKAMLKELIYQPTLTEADLSDEQTVTR 628 R + +++ + + D + Sbjct: 591 NPENRVLKRITVEDAAAADRMFNILMGDAVGPRK 624 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 55/156 (35%), Positives = 86/156 (55%), Gaps = 5/156 (3%) Query: 652 HTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKL-RGLLEEDAFIERG 710 + E+ ++ ++ + VD + + YR + L E + + R Sbjct: 486 EFDIEKARYQRLILMTDADVDGAHI--RTLLLTLLYRHMRPLIEAGYVYAAQPPLYRVRY 543 Query: 711 ERRQPVASFEQALDWLVKESRRG--LSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVK 768 A E D +++E G +QR+KGLGEMNP+QLW+TTM+PE+R + R+TV+ Sbjct: 544 RGNTYDAMDEAERDRIIEEECNGNPTQVQRFKGLGEMNPDQLWDTTMNPENRVLKRITVE 603 Query: 769 DAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 DA AAD++F LMGDAV PR+ FI+++A A +DI Sbjct: 604 DAAAADRMFNILMGDAVGPRKQFIKDHANDAEWVDI 639 >UniRef50_Q94BZ7 DNA gyrase subunit B, mitochondrial n=83 Tax=cellular organisms RepID=GYRBM_ARATH Length = 732 Score = 672 bits (1734), Expect = 0.0, Method: Composition-based stats. Identities = 281/641 (43%), Positives = 400/641 (62%), Gaps = 23/641 (3%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 S Y S I+VL+GLD VRKRPGMYIG T GLHH+V+E++DNAIDEA AG+ ++ V Sbjct: 88 SKGYSSEQIQVLEGLDPVRKRPGMYIGSTG-SRGLHHLVYEILDNAIDEAQAGYASKVDV 146 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNS--YKVSGGLHGVG 119 +HAD SVSV D+GRGIPT +HP S+ E ++TVLHAGGKF S Y VSGGLHGVG Sbjct: 147 VLHADGSVSVVDNGRGIPTDLHPATKKSSLETVLTVLHAGGKFGGTSSGYSVSGGLHGVG 206 Query: 120 VSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLA---VTGETEKT-GTMVRFWPSLET 175 +SVVNALS+ LE+ + R+G H+Q Y G P L + E++ T GT +RFWP E Sbjct: 207 LSVVNALSEALEVSVWRDGMEHKQNYSRGKPITTLTCRVLPLESKGTKGTSIRFWPDKEV 266 Query: 176 FTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKED----HFHYEGGIKAFVEYLNK 231 FT EF++ +A R+REL+FLN V+I L+ + D E + + GG+ +V +LN Sbjct: 267 FTTAIEFDHNTIAGRIRELAFLNPKVTISLKKEDDDPEKTQYSEYSFAGGLTEYVSWLNT 326 Query: 232 NKTPIHPNIFYFSTEKDGIGVEVALQW-NDGFQENIYCFTNNIPQRDGGTHLAGFRAAMT 290 +K PIH ++ F E +G V+VALQW +D + + + + N+I DGGTH+ G +A++T Sbjct: 327 DKNPIH-DVLGFRREINGATVDVALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLT 385 Query: 291 RTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVE 350 RTLN K K+ +S +G+ REGL +VSVKVP+P+F QTK +L + EV+ V+ Sbjct: 386 RTLNTLAKKSKTVKEKDISLSGEHVREGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVD 445 Query: 351 QQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADC 410 Q + E L E+L +P + ++ K ++A +A AA+RARE+ R K L + LPGKLADC Sbjct: 446 QSVQEYLTEFLELHPDILESIISKSLNAYKAALAAKRARELVRSKSVLKSSSLPGKLADC 505 Query: 411 QERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATL 470 DP +SE+++VEGDSAGGSAKQGR+R+ QAILPL+GKILN+E+ M ++E+ L Sbjct: 506 SSTDPEVSEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNL 565 Query: 471 ITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIA 530 I LG G+ +++ + LRYH III+TDADVDG+HIRTLLLTFF+R + + G +Y+ Sbjct: 566 ILGLGLGVKGEDFKKENLRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVG 625 Query: 531 QPPLYKVKKGKQEQYIKDDEAMDQYQISI-ALDGATLHTNASAPALAGEALEKLVSEYNA 589 PPL+KV++GK QY DD + + + A + + E L Sbjct: 626 VPPLFKVERGKNAQYCYDDADLKKITSNFPANASYNIQRFKGLGEMMPEQL--------- 676 Query: 590 TQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWV 630 + +N R + ++ ++ + + V + + Sbjct: 677 WETTMNPETRILKQLVVDDIAEANMTFSSLMGARVDVRKEL 717 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 49/199 (24%), Positives = 81/199 (40%), Gaps = 14/199 (7%) Query: 609 LIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRT 668 ++ EA + + + + L G +K E + I+ + Sbjct: 545 ILNIERKDEAAMYKNEEIQNLILGL-----GLGVKGEDFK------KENLRYHKIIILTD 593 Query: 669 HGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVK 728 VD + Y+R + + +ERG+ Q Sbjct: 594 ADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVERGKNAQYCYDDADLKKITSN 653 Query: 729 E-SRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEP 787 + +IQR+KGLGEM PEQLWETTM+PE+R + ++ V D A+ F++LMG V+ Sbjct: 654 FPANASYNIQRFKGLGEMMPEQLWETTMNPETRILKQLVVDDIAEANMTFSSLMGARVDV 713 Query: 788 RRAFIEENA--LKAANIDI 804 R+ I+ A + +DI Sbjct: 714 RKELIKNAATRINLQRLDI 732 >UniRef50_D0MI55 DNA topoisomerase (ATP-hydrolyzing) n=8 Tax=Bacteria RepID=D0MI55_RHOM4 Length = 648 Score = 672 bits (1733), Expect = 0.0, Method: Composition-based stats. Identities = 267/643 (41%), Positives = 387/643 (60%), Gaps = 13/643 (2%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 ++ +Y I+VL+GL+ VRKRPGMYIG T GLHH+++E+VDNA+DEA+ G I Sbjct: 4 LAATYTGKDIQVLEGLEPVRKRPGMYIGGTGK-PGLHHLLWEIVDNAVDEAVNGFASLIE 62 Query: 61 VTIHADN-SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 119 VT+HAD SV+V D+GRGIP HP + + E+I+T LHAGGKFD +Y SGGLHGVG Sbjct: 63 VTLHADGRSVTVTDNGRGIPVDPHPVKKIPTLELILTTLHAGGKFDRKNYITSGGLHGVG 122 Query: 120 VSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTN 178 SVVNALS++L ++R+GK ++Q + G P+ L V E + TGT + F P E F Sbjct: 123 ASVVNALSEELVATVKRDGKTYQQRFVRGKPKTKLKVVAENTRGTGTSIYFRPDPEIF-E 181 Query: 179 VTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYL--NKNKTPI 236 TEF+ + + L ++LN + I +D+ G+ FH+EGGI ++ L + + Sbjct: 182 TTEFDPVWIREHLEIKTYLNRNLKIVFKDETSGERYEFHHEGGIVEYLARLVEEQGARVV 241 Query: 237 HPNIFYFSTE--KDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLN 294 HP F E +DG +EVALQW + +E I F N IP +GGTH GF+ A+ + Sbjct: 242 HPEPFVLIQEELRDGARLEVALQWTEAPRELIKSFVNGIPTTEGGTHEQGFKEAVRSAVR 301 Query: 295 AYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMN 354 AYM+ + + T DD REGL+AVV++ + +P+F QTK+KL + E +S V + Sbjct: 302 AYMETHDLLPRN-LEVTADDIREGLVAVVNLFMVEPQFQGQTKEKLNNPEARSLVIGAVR 360 Query: 355 ELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLA-GLPGKLADCQER 413 L ++L +PT A+ +V +II AA+AR A+R A RR+ ++ LPGKLADC Sbjct: 361 LDLEQFLNAHPTMAEAIVARIIQAAKARLASRAAARSVRRQSSVSHRLNLPGKLADCTST 420 Query: 414 DPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITA 473 +P EL++VEGDSAGGSAKQ R+R+ QA+LPL+GK+LN E+A K+ ++E++ ++ A Sbjct: 421 NPEECELFIVEGDSAGGSAKQARDRRFQAVLPLRGKVLNAEQASLRKVEENKELSNIVQA 480 Query: 474 LGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPP 533 LGCGIG D+ + +LRYH II++ DAD DG HI TLLLTFFYR M ++E GHVY+AQPP Sbjct: 481 LGCGIG-DKIDLSRLRYHKIILLMDADSDGHHITTLLLTFFYRYMRPLIENGHVYVAQPP 539 Query: 534 LYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKM 593 LY++ GK+ + DD D+ + + GE + + E + Sbjct: 540 LYRIDAGKETYWALDDADRDRILQELRKKRKNVQVEIQRFKGLGEMMPDTLRETTLDPRK 599 Query: 594 INRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSE 636 + P+ L+ + T+TE D R++ ++ Sbjct: 600 RRLLRVEIPEDA--RLLTEQTITELMGRDVSARFRFIMENAAQ 640 Score = 102 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 43/134 (32%), Positives = 66/134 (49%), Gaps = 10/134 (7%) Query: 681 FITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQA-LDWLVKESRRG-----L 734 + YR + L E + + ++ + + A D +++E R+ + Sbjct: 515 LLLTFFYRYMRPLIENGHVYVAQPPLYRIDAGKETYWALDDADRDRILQELRKKRKNVQV 574 Query: 735 SIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIA--ADQLFTTLMGDAVEPRRAFI 792 IQR+KGLGEM P+ L ETT+DP RR+LRV + + +Q T LMG V R FI Sbjct: 575 EIQRFKGLGEMMPDTLRETTLDPRKRRLLRVEIPEDARLLTEQTITELMGRDVSARFRFI 634 Query: 793 EENA--LKAANIDI 804 ENA + A +D+ Sbjct: 635 MENAAQVDAEALDV 648 >UniRef50_B6BRC2 DNA gyrase subunit B n=1 Tax=Candidatus Pelagibacter sp. HTCC7211 RepID=B6BRC2_9RICK Length = 686 Score = 671 bits (1732), Expect = 0.0, Method: Composition-based stats. Identities = 328/624 (52%), Positives = 424/624 (67%), Gaps = 32/624 (5%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 N+Y + SIKVLKGL+AVRKRPGMYIGDTDDGTGLHHMV+EVVDN+IDEALAGHCK I V Sbjct: 4 KNTYQADSIKVLKGLEAVRKRPGMYIGDTDDGTGLHHMVYEVVDNSIDEALAGHCKNINV 63 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 I++D +++V DDGRGIP +H E SAAEVIMT LHAGGKFD +SYKVSGGLHGVGVS Sbjct: 64 RINSDGTITVNDDGRGIPVDMHKGEKKSAAEVIMTQLHAGGKFDHDSYKVSGGLHGVGVS 123 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTE 181 VVNALS+KL+L I R+GK H +++G APL + G+++ +GT + F PS E F+++ + Sbjct: 124 VVNALSEKLKLEINRDGKKHFIEFKNGEAIAPLKIVGKSKNSGTQITFLPSKEIFSSI-K 182 Query: 182 FEYEILAKRLRELSFLNSGVSIRLRDK--RDGKEDHFHYEGGIKAFVEYL--------NK 231 F IL KR+REL+FLN G+ I D + K F ++GG+ FV +L NK Sbjct: 183 FSANILIKRMRELAFLNKGIKIIFTDASLKKEKVSEFKFDGGVLEFVNFLDEKREKLQNK 242 Query: 232 NKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTR 291 N + Y +KD I +E +L+WN + E+I+ +TNNI Q+DGGTHL GFR+A+TR Sbjct: 243 NGNDLFKKPIYIEGKKDNIELECSLKWNASYAEDIFPYTNNIFQKDGGTHLLGFRSALTR 302 Query: 292 TLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQ 351 +N Y ++ KK K++ +GDD +EGL V+S K+PDPKFSSQTKDKLVSSEV+ VE Sbjct: 303 VVNKYANEHNLLKKNKLAISGDDIKEGLTCVLSTKIPDPKFSSQTKDKLVSSEVRMIVET 362 Query: 352 QMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQ 411 +NE L+ + +NP+ AKI++ K+I AA AR+ AR+ARE RRKGAL+L+GLPGKLADCQ Sbjct: 363 VVNEKLSIWFDQNPSVAKIILAKVIQAAMARDVARKARENVRRKGALELSGLPGKLADCQ 422 Query: 412 ERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILN--VEKARFD---------- 459 +EL++VEGDSAGGSAKQGRNR NQA+LPL+GKILN VE Sbjct: 423 IGKQEGTELFIVEGDSAGGSAKQGRNRANQAVLPLRGKILNTYVEDLSVKKNGNGDASEQ 482 Query: 460 -------KMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLT 512 KM+SS E+ TLI ALG E + LRY IIIMTDADVDGSHIR LLLT Sbjct: 483 QRTKALSKMISSNEIVTLINALGLDPKTQEIDLKDLRYGKIIIMTDADVDGSHIRALLLT 542 Query: 513 FF-YRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNAS 571 FF + +++E GHVY+AQPPL+K+ KG + YIKD+ ++ Y + + + + S Sbjct: 543 FFNNKPFNKLIENGHVYLAQPPLFKINKGTKGIYIKDELELENYIVKNSKELKKIKK-GS 601 Query: 572 APALAGEALEKLVSEYNATQKMIN 595 + LEK + + Sbjct: 602 KEYIKELELEKSKMNIQRFKGLGE 625 Score = 122 bits (305), Expect = 9e-26, Method: Composition-based stats. Identities = 58/250 (23%), Positives = 109/250 (43%), Gaps = 25/250 (10%) Query: 556 QISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTL 615 ++ ++ ++ N + A + + K +S+ ++ +++ ++ L P Sbjct: 461 ILNTYVEDLSVKKNGNGDA-SEQQRTKALSKMISSNEIVT---------LINALGLDPKT 510 Query: 616 TEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDY 675 E DL D + + + D + GS + + T F ++ + Sbjct: 511 QEIDLKDLRY------GKIIIMTDADVDGSHIRALLLTFFNNKPFNKLIENGHVYLAQPP 564 Query: 676 PLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESRRGLS 735 T G Y + L E+ ++ + + + + ++ + ++ Sbjct: 565 LFKINKGTKGIYIK--------DELELENYIVKNSKELKKIKKGSKEYIKELELEKSKMN 616 Query: 736 IQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQ-LFTTLMGDAVEPRRAFIEE 794 IQR+KGLGEMNPE+LW TT+DPE+R +L+V + DQ L TLMG+ V R+ FI Sbjct: 617 IQRFKGLGEMNPEELWSTTLDPENRNLLQVQYSKDLKKDQSLIHTLMGNDVALRKDFIIS 676 Query: 795 NALKAANIDI 804 NA+ N+DI Sbjct: 677 NAINVQNLDI 686 >UniRef50_B6GDL9 DNA gyrase subunit B n=2 Tax=Collinsella RepID=B6GDL9_9ACTN Length = 674 Score = 671 bits (1731), Expect = 0.0, Method: Composition-based stats. Identities = 294/669 (43%), Positives = 417/669 (62%), Gaps = 26/669 (3%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 N Y + IKVL+GL+AVR RPGMYIG T TGLHH+V+E+VDN++DEA+AG C +I VT Sbjct: 5 NEYGGNEIKVLEGLEAVRVRPGMYIGST-SSTGLHHLVWEIVDNSVDEAMAGFCTKIEVT 63 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 +H DNS++V D+GRGIP HP + + EV+MT+LHAGGKFD+++YKVSGGLHGVGVSV Sbjct: 64 VHPDNSITVVDNGRGIPVDEHPVKKIPTLEVVMTILHAGGKFDNSAYKVSGGLHGVGVSV 123 Query: 123 VNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEF 182 VNALS+K+ + ++R+G I+ + G + G +E TGT FWP E F T + Sbjct: 124 VNALSKKMNVQVRRDGHIYEMEFSRGKTTQKMREIGTSETTGTTTTFWPDEEIF-ETTVY 182 Query: 183 EYEILAKRLRELSFLNSGVSIRLRDKR--DGKEDHFHYEGGIKAFVEYLNKNKTPIH--P 238 +Y+IL RL++ +FLN + I L+D+R D + F Y GGI FV++LN+ KT Sbjct: 183 DYDILRTRLQQTAFLNKNLKIVLKDERTADPLVEEFCYAGGIVDFVKFLNEGKTVPEGLK 242 Query: 239 NIFYFSTEKDGI-------GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTR 291 + Y S E + VEVA+QWN + EN+ F N+I +GG H+ GFRAA+T Sbjct: 243 HPIYLSGESEPGAPVEKIGEVEVAIQWNTSYSENVVSFANDIRTIEGGMHMEGFRAALTS 302 Query: 292 TLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQ 351 +N Y K K+ + + TGDD REGL AVVSVK+ DP+F QTK KL SS +++ + Sbjct: 303 VINDYARKNNILKEKEGNLTGDDIREGLTAVVSVKLADPQFEGQTKAKLGSSFMRTLTRK 362 Query: 352 QMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQ 411 ++E LA++L E+P A+ ++ K A++AR AAR+ARE TRRK L+ A LPGKLADC Sbjct: 363 VVSEGLADFLEEHPKQAREIIKKAQQASKARNAARKAREATRRKSLLETASLPGKLADCS 422 Query: 412 ERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLI 471 RD L+EL++VEGDSAGGSAK GR R QAILPL+GKILNVE+ + SS+ + +LI Sbjct: 423 VRDAELTELFIVEGDSAGGSAKDGRRRDIQAILPLRGKILNVERVGDHRAFSSETIQSLI 482 Query: 472 TALGCGI-----GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGH 526 TA+GCG+ +++ K RYH IIIMTDADVDG+HIR LLLTFFY+ M +++ G+ Sbjct: 483 TAIGCGVTTGNGDGGDFDITKARYHKIIIMTDADVDGAHIRILLLTFFYKYMRPLIDAGY 542 Query: 527 VYIAQPPLYKVKKGKQEQYIK-DDEAMDQYQISIALDGATLH-TNASAPALAGEALEKLV 584 VY+A PP++ +K + Y+ + + + ++ L+ A G+ +K Sbjct: 543 VYVACPPIFGIKVRNKIHYVYPNGRQAEDEILRDSIKALGLNPDEADDEQANGKVTKKRK 602 Query: 585 SEYNATQKMINRME-RRYPKAMLK--ELIYQPTLTEADLSDEQTVTRWVNALV---SELN 638 K + M+ ++ + I Q E + ++ V + + V E Sbjct: 603 GYTVQRYKGLGEMDPKQLASTTMDPKTRILQRVTIEDAVVADRAVRELMGSEVGYRREYI 662 Query: 639 DKEQHGSQW 647 +K H +++ Sbjct: 663 EKHAHDARF 671 Score = 118 bits (297), Expect = 7e-25, Method: Composition-based stats. Identities = 39/84 (46%), Positives = 59/84 (70%) Query: 720 EQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTT 779 ++ + V + R+G ++QRYKGLGEM+P+QL TTMDP++R + RVT++DA+ AD+ Sbjct: 590 DEQANGKVTKKRKGYTVQRYKGLGEMDPKQLASTTMDPKTRILQRVTIEDAVVADRAVRE 649 Query: 780 LMGDAVEPRRAFIEENALKAANID 803 LMG V RR +IE++A A +D Sbjct: 650 LMGSEVGYRREYIEKHAHDARFLD 673 >UniRef50_P50074 DNA gyrase subunit B, novobiocin-resistant n=117 Tax=cellular organisms RepID=GYRBR_STRSH Length = 677 Score = 667 bits (1722), Expect = 0.0, Method: Composition-based stats. Identities = 290/650 (44%), Positives = 401/650 (61%), Gaps = 33/650 (5%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 + SYD+++I VL GLDAVRKRPGMYIG T + GLHH+V E+VDN++DEALAG I V Sbjct: 23 TASYDANAITVLDGLDAVRKRPGMYIGSTGE-RGLHHLVQELVDNSVDEALAGVADRIDV 81 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 T+ AD V V D+GRGIP G+HP E A EV++TVLHAGGKF Y VSGGLHGVG+S Sbjct: 82 TVLADGGVRVVDNGRGIPVGMHPVEKRPAVEVVLTVLHAGGKFGGGGYGVSGGLHGVGLS 141 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTE 181 VVNALS +L I +G Q Y G P APLA T +TGT + FW + F TE Sbjct: 142 VVNALSTRLSAEIWTDGHRWTQDYRDGAPTAPLARHEATSRTGTSLTFWADGDIF-ETTE 200 Query: 182 FEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDH----------------FHYEGGIKAF 225 + +E LA+R +E++FLN G+++ L D+R + Y+GGI F Sbjct: 201 YSFETLARRHQEMAFLNGGLTLTLTDERSSARATAAVDEADSDPTAKTVSYRYDGGITDF 260 Query: 226 VEYLNKNK-TPIHPNIFYFSTEKDG--IGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 282 V +LN K P HP++ + E + E+ALQWN + +++Y + N I +GGTH Sbjct: 261 VVHLNARKGEPAHPSVITIAAEDTERLLSAEIALQWNGQYTDSVYSYANAIHTHEGGTHE 320 Query: 283 AGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 342 GFR A+T +N Y ++ + + +G+D REGL A++SV V +P+F QTK KL + Sbjct: 321 EGFRTALTTVVNRYAREKRLLRDKDANLSGEDIREGLTAIISVNVGEPQFEGQTKTKLGN 380 Query: 343 SEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAG 402 +EV++ +++ ++E LA++ NP +A +V K + AA AR AAR+AR++TRRKG L+ A Sbjct: 381 TEVRTLLQKIVHEHLADWFDRNPNEAVDIVRKAVQAATARVAARKARDLTRRKGLLETAA 440 Query: 403 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 462 LPGKL+DCQ DPA SE+++VEGDSAGGSAK GRN + QAILP++GKILNVEKAR DK+L Sbjct: 441 LPGKLSDCQSNDPATSEIFIVEGDSAGGSAKAGRNPQYQAILPIRGKILNVEKARIDKVL 500 Query: 463 SSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIV 522 +QE LI+A G G+ D ++ KLRYH II+M DADVDG HI TLLLTF +R M +V Sbjct: 501 QNQENQALISAFGTGVHED-FDIAKLRYHKIILMADADVDGQHISTLLLTFLFRFMRPLV 559 Query: 523 ERGHVYIAQPPLYKVKKGKQE-QYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALE 581 E GHV++++PPLYK+K ++ +Y D + + + S G Sbjct: 560 EEGHVHLSRPPLYKIKWSREHVEYAYSDRERNT-LLERGRRDGRRIRDDSIQRFKG---- 614 Query: 582 KLVSEYNATQKMINRME---RRYPKAMLKELIYQPTLTEADLSDEQTVTR 628 + E NA + + M+ R + L + + L + ++ R Sbjct: 615 --LGEMNAEELRVTTMDPDHRVLGQVTLDDAAFADDLFSVLMGEDVEARR 662 Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats. Identities = 55/190 (28%), Positives = 83/190 (43%), Gaps = 10/190 (5%) Query: 623 EQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFI 682 R L ++ N + + + I+ + VD + + Sbjct: 490 NVEKARIDKVLQNQENQALISAFGTGVHEDFDIAKLRYHKIILMADADVDGQHI--STLL 547 Query: 683 TGGEYRRICTLGEKLRGLLEEDAF--IERGERRQPVASFEQALDWLVKESRRGL------ 734 +R + L E+ L I+ A ++ + L++ RR Sbjct: 548 LTFLFRFMRPLVEEGHVHLSRPPLYKIKWSREHVEYAYSDRERNTLLERGRRDGRRIRDD 607 Query: 735 SIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEE 794 SIQR+KGLGEMN E+L TTMDP+ R + +VT+ DA AD LF+ LMG+ VE RR FI+ Sbjct: 608 SIQRFKGLGEMNAEELRVTTMDPDHRVLGQVTLDDAAFADDLFSVLMGEDVEARRHFIQR 667 Query: 795 NALKAANIDI 804 NA +DI Sbjct: 668 NAQDVRFLDI 677 >UniRef50_P34031 DNA gyrase subunit B n=54 Tax=Bacteria RepID=GYRB_SPICI Length = 640 Score = 667 bits (1722), Expect = 0.0, Method: Composition-based stats. Identities = 274/588 (46%), Positives = 386/588 (65%), Gaps = 10/588 (1%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 M ++Y+S SI++L+GL+A+RKRPGMYIG T+ GLHH+V+E+VDN+IDE LA +I Sbjct: 1 MGDNYNSESIQILEGLEAIRKRPGMYIGATN-ARGLHHLVWEIVDNSIDEVLANFANKIK 59 Query: 61 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 + ++ D S++V D+GRGIP IHP+ VS E + T+LHAGGKFD N+YK+SGGLHGVG Sbjct: 60 IILNKDESITVIDNGRGIPIEIHPKTKVSTLETVFTILHAGGKFDSNTYKISGGLHGVGA 119 Query: 121 SVVNALSQKLELVIQREGKIHRQIYEHG-VPQAPLAVTGETEKTGTMVRFWPSLETFTNV 179 SVVNALS+ L++ +++ K + + +G P+ G T +TGT V F P + F Sbjct: 120 SVVNALSKYLKVEVRKNNKKYVMEFHNGGQILTPIKEVGSTSETGTTVTFLPDEKIFKET 179 Query: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDH---FHYEGGIKAFVEYLNKNKTPI 236 T F + + R+++L FLN G+ I L D R+ E+ + + GIK +V LNK Sbjct: 180 TIFSFSTIQNRIKQLVFLNKGLEISLVDLREEDEEKTVLYQFNNGIKDYVLELNKTIGTP 239 Query: 237 HPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAY 296 ++FY +D I VE LQ+ND + ENI+ F NNI +GGTH G R A+ R +N Y Sbjct: 240 LNDVFYVEGIEDNIVVEFGLQYNDNYSENIFSFCNNINTHEGGTHEEGARLAIVREINNY 299 Query: 297 MDK--EGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMN 354 +K + T DD +EG+ ++S++ P+P++ QT KL++SEVK V + Sbjct: 300 FKNQINKNNKGNEDKFTWDDIKEGMTIIISIRHPEPQYEGQTNQKLLNSEVKKIVSNIVG 359 Query: 355 ELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERD 414 + L+ YLLENP DAK ++ KI + +A A+RA+E+TRRK +D LPGKL+DC+ +D Sbjct: 360 KGLSSYLLENPEDAKKIIEKISLSLKATIVAQRAKEITRRKIVMDSFSLPGKLSDCETKD 419 Query: 415 PALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAL 474 ++ELY+VEGDSAGGSAK GRNRK QAILPL+GKILNVEKA+ K+ + E+ ++ITAL Sbjct: 420 AKIAELYIVEGDSAGGSAKSGRNRKFQAILPLRGKILNVEKAKQIKIFENNEINSIITAL 479 Query: 475 GCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPL 534 G GI +D +N KLRY +IIMTDADVDG+HIR LLLTFFYR M +++E G++YIAQPPL Sbjct: 480 GAGI-KDNFNDKKLRYQKVIIMTDADVDGAHIRILLLTFFYRYMKDLIENGNIYIAQPPL 538 Query: 535 YKVKKGKQEQYIKDDEAMDQYQISIA--LDGATLHTNASAPALAGEAL 580 YKV+ Q +Y+ D ++ Y+ + T+ + E L Sbjct: 539 YKVENSNQIRYVYSDNELELYKEELLKQNKNYTIQRYKGLGEMNPEQL 586 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 54/156 (34%), Positives = 80/156 (51%), Gaps = 6/156 (3%) Query: 653 TNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGER 712 N ++ ++ ++ + VD + + YR + L E + + + Sbjct: 487 FNDKKLRYQKVIIMTDADVDGAHI--RILLLTFFYRYMKDLIENGNIYIAQPPLYKVENS 544 Query: 713 RQPVASFEQALDWLVKES----RRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVK 768 Q + L KE + +IQRYKGLGEMNPEQLWETTMDPE R +L+V+V Sbjct: 545 NQIRYVYSDNELELYKEELLKQNKNYTIQRYKGLGEMNPEQLWETTMDPERRLLLKVSVN 604 Query: 769 DAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 +A A+ + LMG+ VEPR+ FI ENA N+D+ Sbjct: 605 NAFEANLICNELMGENVEPRKKFIRENAKYVKNLDV 640 >UniRef50_D0J983 DNA gyrase subunit B n=22 Tax=cellular organisms RepID=D0J983_BLASP Length = 642 Score = 659 bits (1701), Expect = 0.0, Method: Composition-based stats. Identities = 284/635 (44%), Positives = 407/635 (64%), Gaps = 19/635 (2%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 + Y + SI+ L+G++ +R RP MYIGD GLHH+V EV+DN++DE+LAG+C +I V Sbjct: 5 NTDYTADSIQSLEGIEHIRLRPSMYIGDVG-IRGLHHLVCEVIDNSVDESLAGYCNKIWV 63 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 TIH + ++V D+GRGIP IH +EG SA EV+MT + AGGKFD NSYKVSGGLHGVG+S Sbjct: 64 TIHKNGFITVLDNGRGIPIDIHKKEGKSALEVVMTKIGAGGKFDKNSYKVSGGLHGVGIS 123 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTE 181 VNALS++L + + R GKI++Q Y G P + GET GT + + F ++T Sbjct: 124 CVNALSKRLIVTVYRNGKIYQQEYLRGTPIDRVQCLGETHLQGTKIHYLADNSIFNSIT- 182 Query: 182 FEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIF 241 + YEIL+ RL+EL+FLN G+ + L+D+R+ E+ F + G+K ++ L+KN+ + NI Sbjct: 183 YHYEILSTRLKELAFLNKGLHLFLKDERNNIEEDFFSKNGLKEYLSILDKNQESLIRNII 242 Query: 242 YFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD--- 298 + EK+ VEVA+Q+N F+E IY + NNI +GGTH++GFR A+TRT Y D Sbjct: 243 FIEGEKEDTIVEVAMQYNTSFKEKIYSYVNNINTSEGGTHISGFRRALTRTFKKYTDGLL 302 Query: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 +KK KV TGDD REGL A++S++V +P+F QTK KL + EV V++ + E+L Sbjct: 303 SNKDNKKDKVDLTGDDFREGLTAIISIRVMEPQFEGQTKTKLSNHEVGGIVDKIVGEMLN 362 Query: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 YL ENP++ + ++ K+I +A+AR+AA++ARE+ ++K + + LPGKLADC +P Sbjct: 363 SYLEENPSERRKIIDKVILSAKARQAAKKARELIQKKSPIYNSILPGKLADCSFNNPENC 422 Query: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 E+YLVEGDSAGG+AKQGR+R QAILPL+GKILNVEKA K+ ++E+ + T+LG I Sbjct: 423 EIYLVEGDSAGGTAKQGRDRSFQAILPLRGKILNVEKAMQYKIFENEEIRNIFTSLGVSI 482 Query: 479 GRDEY----NPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPL 534 G +E N KLRY+ IIIMTDAD+DGSHI TL+LT F+R M ++E+GH+YIA PPL Sbjct: 483 GTEEDPKNLNVKKLRYNKIIIMTDADIDGSHISTLILTLFFRYMKPLIEKGHIYIATPPL 542 Query: 535 YKVKKGKQEQYIKDDEAMDQYQISIA-LDGATLHTNASAPALAGEALEKLVSEYNATQKM 593 Y ++KG QY DE ++ + + + E L + Sbjct: 543 YLIRKGNHSQYAWSDEEREKILQRLGRRKKINIQRYKGLGEMNAEQL---------WETT 593 Query: 594 INRMERRYPKAMLKELIYQPTLTEADLSDEQTVTR 628 +N +R K ++ L + + +E R Sbjct: 594 MNPKKRTLRKVHIENLSEADKIFSILMGEEVPPRR 628 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 51/152 (33%), Positives = 81/152 (53%), Gaps = 2/152 (1%) Query: 654 NAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERR 713 N ++ + I+ + +D + Y + + I +G Sbjct: 492 NVKKLRYNKIIIMTDADIDGSHISTLILTLFFRYMKPLIEKGHIYIATPPLYLIRKGNHS 551 Query: 714 QPVASFEQALDWLVKESR-RGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIA 772 Q S E+ L + R + ++IQRYKGLGEMN EQLWETTM+P+ R + +V +++ Sbjct: 552 QYAWSDEEREKILQRLGRRKKINIQRYKGLGEMNAEQLWETTMNPKKRTLRKVHIENLSE 611 Query: 773 ADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 AD++F+ LMG+ V PRR+FIE+NA+ A ID+ Sbjct: 612 ADKIFSILMGEEVPPRRSFIEKNAIHAK-IDV 642 >UniRef50_Q2NJM1 DNA gyrase subunit B n=5 Tax=Mollicutes RepID=Q2NJM1_AYWBP Length = 671 Score = 654 bits (1688), Expect = 0.0, Method: Composition-based stats. Identities = 279/663 (42%), Positives = 402/663 (60%), Gaps = 45/663 (6%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 +Y++ SI++L+GL+AVRKRPGMYIG T GLHH+V+E+VDN+IDEALAGH I + Sbjct: 2 KNYNADSIQILEGLEAVRKRPGMYIGST-AQKGLHHLVWEIVDNSIDEALAGHANNITLE 60 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 I +SV D+GRGIP IHP+ G A E I+T LHAGGKFD +SYKVSGGLHGVG SV Sbjct: 61 ILPGEIISVSDNGRGIPVDIHPKTGKPAVETILTTLHAGGKFDSSSYKVSGGLHGVGASV 120 Query: 123 VNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEF 182 VNALS + I+ +I+ Q YE G+ +PL V G T K GT ++F E F T + Sbjct: 121 VNALSNWFTVEIRLNKQIYFQKYEKGIAVSPLEVIGGTNKRGTTIQFLSDPEIFQETTIY 180 Query: 183 EYEILAKRLRELSFLNSGVSIRLRDKRDGKED--HFHYEGGIKAFVEYLNKN-KTPIHPN 239 ++ L +R+++LSFLN G+ +++ DKR KE +F +E G++ +++++N + K Sbjct: 181 NFDTLKERMQQLSFLNKGLKLKIADKRYEKETVFNFCHEKGLQDYIDFINTSHKQIPFHE 240 Query: 240 IFYFSTEKDGIGVEVALQWNDGF--------------------------QENIYCFTNNI 273 IFY E + E+ ++ + I+ F NNI Sbjct: 241 IFYLEKEAQKLAFEIVFEYTTQLRPTKKDEQGNEIEEKEDKDTIPRYTQSQKIFSFVNNI 300 Query: 274 PQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFS 333 P +GGTH GF+ A+TR ++ Y + KK + + +D EG+ A++S+K DP+F Sbjct: 301 PTHEGGTHEEGFKLALTRVISKYAKEFNLLKKDEHLLS-EDILEGITAIISLKHQDPQFE 359 Query: 334 SQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTR 393 QTK KL ++EV+ Q E L +YLLE+P D++ ++ K + +A AR AA+RARE+ R Sbjct: 360 GQTKAKLANTEVRQITSQLFGEFLEKYLLEHPQDSRKIIDKCLLSANARLAAKRAREVVR 419 Query: 394 RKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 453 K LD G KLADC+ +DP +SELY+VEGDSAGGSAKQGR+ + QAILPL+GK+LNV Sbjct: 420 NK-PLDSLGFASKLADCRSKDPHISELYIVEGDSAGGSAKQGRDSRFQAILPLRGKVLNV 478 Query: 454 EKARFDKMLSSQEVATLITALGCGIG---RDEYNPDKLRYHSIIIMTDADVDGSHIRTLL 510 EK+ K+L+++E+ +LI A+G GI ++N DK+RYH IIIMTDADVDG+HIRTLL Sbjct: 479 EKSLDAKILTNKEIKSLIQAIGAGINIGKGKDFNVDKIRYHKIIIMTDADVDGAHIRTLL 538 Query: 511 LTFFYRQMPEIVERGHVYIAQPPLYKVKKGK-QEQYIKDDEAMDQYQISIALDGATLHTN 569 LTFF+R E++E+G++Y A+PPLYK +KGK +Y D++ + + +L Sbjct: 539 LTFFFRHFRELIEKGYIYFARPPLYKYQKGKGTPKYFYDEKTKQTF-----ANKNSLKDG 593 Query: 570 ASAPALAGEALEKLVSEYNATQKMINRMERRYPKAML----KELIYQPTLTEADLSDEQT 625 GE + E + ++ A+ +E + + T L E+ Sbjct: 594 FQRYKGLGEMNPNQLWETTMDPENRTLLKASLKDALNALSDEEALMETDQTFNMLMGEKV 653 Query: 626 VTR 628 + R Sbjct: 654 LPR 656 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 53/165 (32%), Positives = 78/165 (47%), Gaps = 15/165 (9%) Query: 652 HTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGE 711 N ++ + I+ + VD + + +R L EK + + Sbjct: 510 DFNVDKIRYHKIIIMTDADVDGAHI--RTLLLTFFFRHFRELIEKGYIYFARPPLYKYQK 567 Query: 712 RRQPVASFEQALDWLVKESRRGLS--IQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKD 769 + F ++ L QRYKGLGEMNP QLWETTMDPE+R +L+ ++KD Sbjct: 568 GKGTPKYFYDEKTKQTFANKNSLKDGFQRYKGLGEMNPNQLWETTMDPENRTLLKASLKD 627 Query: 770 AIAA----------DQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 A+ A DQ F LMG+ V PR+ FI E AL+A ++D+ Sbjct: 628 ALNALSDEEALMETDQTFNMLMGEKVLPRKNFILEKALEA-DLDV 671 >UniRef50_P43053 DNA gyrase subunit B n=78 Tax=Bacteria RepID=GYRB_MYCHP Length = 648 Score = 648 bits (1672), Expect = 0.0, Method: Composition-based stats. Identities = 258/627 (41%), Positives = 385/627 (61%), Gaps = 17/627 (2%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 + Y++ +I++L+GL+AVRKRPGMYIG GLHH+++E+VDN++DEA+AG EI + Sbjct: 8 HKYNADNIQILEGLEAVRKRPGMYIGSIGF-KGLHHLLWEIVDNSVDEAMAGFATEIKIK 66 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 ++ +N + V+D+GRG+PTGIH SA E I+TVLHAGGKFD ++YKVSGGLHGVG SV Sbjct: 67 LYPNNVIEVEDNGRGMPTGIHSGTKKSAVETILTVLHAGGKFDGSNYKVSGGLHGVGASV 126 Query: 123 VNALSQKLELVIQREGKIHRQIYEHG-VPQAPLAVTGETEK--TGTMVRFWPSLETFTNV 179 VNALS + E+ ++R+GK+H Q + +G +P PL V G + TGT ++F P Sbjct: 127 VNALSSEFEVWVKRDGKLHYQQFRNGGIPVKPLEVIGNVSEVETGTTIKFHPDYTIM-EK 185 Query: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPN 239 F+++ + +++++LN G+ I + + F +EGG+ +V+ LNK K I P Sbjct: 186 ENFDFDTIIDHSKQIAYLNKGLKITVENVEKNIIKVFCFEGGLIDYVKELNKGKKLIVPE 245 Query: 240 IFYFSTEKDG--------IGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTR 291 + Y + + VEVA+Q+N+ + +I + NNI DGGTH GF A+ R Sbjct: 246 VIYAEGVFNDKNFTNGQDVIVEVAMQYNEAYTNSIVSYANNIQTIDGGTHEQGFYDALVR 305 Query: 292 TLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQ 351 N Y + K + T +D +EGL+A++S+K DP F QTK KL + + + A + Sbjct: 306 IYNNYAETNKLFKTSSEKITREDVKEGLVAIISIKHTDPIFEGQTKGKLENKDARIATNK 365 Query: 352 QMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQ 411 +++ L YL ENP A+ ++ K + + R +ARE +R+ LDL LPGKLADC Sbjct: 366 ILSDSLERYLNENPEIARAIIEKCLLSQHTRLLEIKAREASRKGNGLDLGNLPGKLADCS 425 Query: 412 ERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLI 471 ++ + EL++VEG+SAGGSAK GR+R QAILPL+GK++N EK F +LS++E+AT+I Sbjct: 426 SKNAEIRELFIVEGNSAGGSAKMGRDRSIQAILPLRGKVINAEKNSFASVLSNKEIATMI 485 Query: 472 TALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQ 531 ALG GI E++ +KL+YH IIIMTDADVDG+HI TLLLTFFYR M ++E G VY+AQ Sbjct: 486 HALGTGINT-EFDINKLKYHKIIIMTDADVDGAHITTLLLTFFYRYMKPLIEYGFVYLAQ 544 Query: 532 PPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQ 591 PPLYK+ GK +Y +D +Q + + GE + + E Sbjct: 545 PPLYKITSGKNVEYAYNDLQKEQIMAKLEDKR---NVAIQRYKGLGEMDPEQLWETTMDP 601 Query: 592 KMINRMERRYPKAMLKELIYQPTLTEA 618 + ++ + A + + ++ + E Sbjct: 602 ETRKMLQVQIDDAAICDTVFATLMGEE 628 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 63/185 (34%), Positives = 93/185 (50%), Gaps = 5/185 (2%) Query: 623 EQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFI 682 + + L ++ H + + + + I+ + VD + + Sbjct: 466 NAEKNSFASVLSNKEIATMIHALGTGINTEFDINKLKYHKIIIMTDADVDGAHI--TTLL 523 Query: 683 TGGEYRRICTLGEKLRGLLEEDAF--IERGERRQPVASFEQALDWLVK-ESRRGLSIQRY 739 YR + L E L + I G+ + + Q + K E +R ++IQRY Sbjct: 524 LTFFYRYMKPLIEYGFVYLAQPPLYKITSGKNVEYAYNDLQKEQIMAKLEDKRNVAIQRY 583 Query: 740 KGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKA 799 KGLGEM+PEQLWETTMDPE+R+ML+V + DA D +F TLMG+ +EPR FI+ENA A Sbjct: 584 KGLGEMDPEQLWETTMDPETRKMLQVQIDDAAICDTVFATLMGEEIEPRHDFIQENAKYA 643 Query: 800 ANIDI 804 NIDI Sbjct: 644 NNIDI 648 >UniRef50_P66938 DNA topoisomerase 4 subunit B n=158 Tax=Bacteria RepID=PARE_STAAM Length = 663 Score = 647 bits (1669), Expect = 0.0, Method: Composition-based stats. Identities = 296/673 (43%), Positives = 414/673 (61%), Gaps = 27/673 (4%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 N+Y SI+VL+GL+AVRKRPGMYIG TD GLHH+V+E+VDN++DE L G+ EI VT Sbjct: 5 NNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGYGNEIDVT 63 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 I+ D S+S++D+GRG+PTGIH + G EVI TVLHAGGKF YK SGGLHGVG SV Sbjct: 64 INKDGSISIEDNGRGMPTGIH-KSGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASV 122 Query: 123 VNALSQKLELVIQREGKIHRQIYEHGV-PQAPLAVTGETEKTGTMVRFWPSLETFTNVTE 181 VNALS+ LE+ I R+G I+ Q +++G P + L G+T+KTGT V F P F T Sbjct: 123 VNALSEWLEVEIHRDGSIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKASTS 182 Query: 182 FEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHPN 239 F +++L++RL+E +FL + I L D R GKE +H+HYE GIK FV Y+N+ K +H + Sbjct: 183 FNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEGKEVLH-D 241 Query: 240 IFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDK 299 + FS E +GI V+VA Q+ND + E+I F NN+ +DGGTH GF+ AMTR N Y + Sbjct: 242 VATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDYARR 301 Query: 300 EGYSKKAKVSATGDDAREGLIAVVSVKVPDP--KFSSQTKDKLVSSEVKSAVEQQMNELL 357 K + G+D REGL AVVSV++P+ +F QTK KL +SE +SAV+ + + L Sbjct: 302 INELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVDSVVADKL 361 Query: 358 AEYLLENPTDAKIVVGKIIDAARAREAARRAREMTR--RKGALDLAGLPGKLADCQERDP 415 YL E +K +V K I A +AREAAR+ARE R +K L GKL Q ++ Sbjct: 362 PFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNT 421 Query: 416 ALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALG 475 +ELYLVEGDSAGGSAK GR+RK QAILPL+GK++N EKAR + + ++E+ T+I +G Sbjct: 422 EKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIG 481 Query: 476 CGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLY 535 G+G D + + Y+ +IIMTDAD DG+HI+ LLLTFF++ M +V+ G V+IA PPLY Sbjct: 482 AGVGTD-FKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLY 540 Query: 536 KVKKG----KQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQ 591 K++KG K+ +Y DE +++ Q + G TL + E L + Sbjct: 541 KLEKGKGKTKRVEYAWTDEELNKLQKELG-KGFTLQRYKGLGEMNPEQL---------WE 590 Query: 592 KMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTR-WVNALVS-ELNDKEQHGSQWKF 649 +N R + +++ + + D+ R W+ V + + + + Sbjct: 591 TTMNPETRTLIRVQVEDEVRSSKRVTTLMGDKVQPRREWIEKHVEFGMQEDQSILDNSEV 650 Query: 650 DVHTNAEQNLFEP 662 V N + + E Sbjct: 651 QVLENDQFDEEEI 663 Score = 132 bits (333), Expect = 5e-29, Method: Composition-based stats. Identities = 54/176 (30%), Positives = 89/176 (50%), Gaps = 3/176 (1%) Query: 623 EQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFI 682 R + +E + H E + + ++ + D + Sbjct: 458 NTEKARLEDIFKNEEINTIIHTIGAGVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLT 517 Query: 683 TGGEYRRICTLGEKLRGLLEEDAFIERGE---RRQPVASFEQALDWLVKESRRGLSIQRY 739 +Y + ++ L +E+G+ +R A ++ L+ L KE +G ++QRY Sbjct: 518 FFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKGFTLQRY 577 Query: 740 KGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEEN 795 KGLGEMNPEQLWETTM+PE+R ++RV V+D + + + TTLMGD V+PRR +IE++ Sbjct: 578 KGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRVTTLMGDKVQPRREWIEKH 633 >UniRef50_A9KS52 DNA topoisomerase (ATP-hydrolyzing) n=33 Tax=Bacteria RepID=A9KS52_CLOPH Length = 642 Score = 645 bits (1664), Expect = 0.0, Method: Composition-based stats. Identities = 262/641 (40%), Positives = 379/641 (59%), Gaps = 29/641 (4%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 Y+ S I VL+GL+AVRKRPGMYIG T GLHH+++E++DN IDE LAG C ++ +T Sbjct: 2 EQYNGSQIVVLEGLEAVRKRPGMYIGSTGT-RGLHHLIWEILDNGIDEHLAGFCNQLEIT 60 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 + D +S+ D GRG+P IHP + + A V+ T+LHAGGKF + YKVSGGLHGVG SV Sbjct: 61 LLKDGGISIADHGRGVPVDIHPTKKIPTARVVYTILHAGGKFGGSVYKVSGGLHGVGASV 120 Query: 123 VNALSQKLELVIQREGKIHRQIYEHG------VPQAPLAVTGETEK--TGTMVRFWPSLE 174 VNALS ++ + I+R+GKI+R YEHG + L V G+ K TGT V F+P Sbjct: 121 VNALSTRMIVEIRRDGKIYRDEYEHGGHPCVELENGMLPVVGKCNKSDTGTKVTFYPDPT 180 Query: 175 TFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKT 234 F EF+ E + K+L+E++FLN +SI D+ G + + E GIK+FV Y+N+ + Sbjct: 181 IF-ETVEFKAETITKKLKEVAFLNKNLSIVFYDQNTGFKKTYCEEFGIKSFVSYINREAS 239 Query: 235 PIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLN 294 IH Y + I VEVALQ+ + F E I + N I DGGT + GF+ A+TR +N Sbjct: 240 VIHEEPIYIEGKSGDIEVEVALQYTNSFSEQINAYCNRINVVDGGTLVTGFKTALTRVMN 299 Query: 295 AYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMN 354 Y + G K+ + G D R GL+ ++S+K PDP+F QTK KL +++ KSAVE + Sbjct: 300 QYARELGVLKEKDENFDGKDIRNGLVTIISIKHPDPQFEGQTKTKLGNTDAKSAVEDVFS 359 Query: 355 ELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERD 414 + + +N K ++ + + AR+A+ +AR ++ L+ KLA C + Sbjct: 360 GEVTRFFDKNVEILKAILENSMRSYTARKASDKARSAVLKQ--LNDIDTKSKLASCSSKK 417 Query: 415 PALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAL 474 P E+Y+VEGDSAGG+ K RNR+ QA+LPL+GKI+NVEKA +K+L + E+ ++I + Sbjct: 418 PEECEVYIVEGDSAGGTVKTARNRRTQAVLPLRGKIINVEKATLEKILVNNEIKSMIASF 477 Query: 475 GCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPL 534 GCGIG D ++ KLRY III+TDADVDG+HI TLLLTFFYR MPE++ G +Y PPL Sbjct: 478 GCGIGED-FDISKLRYDKIIILTDADVDGAHISTLLLTFFYRFMPELIMEGKIYRGLPPL 536 Query: 535 YKV-------KKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEY 587 Y+V KK K+ +YI +D +D+++ + + + E L Sbjct: 537 YRVEYETSEGKKKKKFEYIYNDFELDKFRKNTKHKIIHIQRYKGLGEMDAEQL------- 589 Query: 588 NATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTR 628 + +N R + + + + T +S+ R Sbjct: 590 --WETTLNPETRVLAQVSITDTVDADETTTLLMSNNVPPRR 628 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 42/97 (43%), Positives = 64/97 (65%), Gaps = 2/97 (2%) Query: 709 RGERRQPVASFEQALDWLVKESR-RGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTV 767 + +++ + LD K ++ + + IQRYKGLGEM+ EQLWETT++PE+R + +V++ Sbjct: 547 KKKKKFEYIYNDFELDKFRKNTKHKIIHIQRYKGLGEMDAEQLWETTLNPETRVLAQVSI 606 Query: 768 KDAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 D + AD+ T LM + V PRRAFI + A K A +DI Sbjct: 607 TDTVDADETTTLLMSNNVPPRRAFIMDEA-KYAKLDI 642 >UniRef50_UPI0001A7B046 ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Arabidopsis thaliana RepID=UPI0001A7B046 Length = 693 Score = 643 bits (1658), Expect = 0.0, Method: Composition-based stats. Identities = 278/675 (41%), Positives = 399/675 (59%), Gaps = 56/675 (8%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 S Y S I+VL+GLD VRKRPGMYIG T GLHH+V+E++DNAIDEA AG +I V Sbjct: 14 SKDYSSEHIQVLEGLDPVRKRPGMYIGSTG-SRGLHHLVYEILDNAIDEAQAGFASKIDV 72 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHA--GGKFDDNSYKVSGGLHGVG 119 +H+D+SVS+ D+GRGIPT +HP G S+ E ++TVLHA + Y VSGGLHGVG Sbjct: 73 VLHSDDSVSISDNGRGIPTDLHPATGKSSLETVLTVLHAGGKFGGKSSGYSVSGGLHGVG 132 Query: 120 VSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLA---VTGETEKT-GTMVRFWPSLE- 174 +SVVNALS+ LE++++R+G +Q Y G P L + E+ T GT +RFWP E Sbjct: 133 LSVVNALSEALEVIVRRDGMEFQQKYSRGKPVTTLTCHVLPPESRGTQGTCIRFWPDKEG 192 Query: 175 --TFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE----DHFHYEGGIKAFVEY 228 FT +F++ +A R+REL+FLN V+I L+ + D E + Y GG+ +V + Sbjct: 193 FALFTTAIQFDHNTIAGRIRELAFLNPKVTISLKKEDDDPERDVYSEYFYAGGLTEYVSW 252 Query: 229 LNKNKTPIHPNIFYFSTEKDGIGVEVALQW-NDGFQENIYCFTNNIPQRDGGTHLAGFRA 287 LN +K P+H ++ F E +G V+V+LQW +D + + + + N+I DGGTH+ G +A Sbjct: 253 LNTDKKPLH-DVLGFRKEINGSTVDVSLQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKA 311 Query: 288 AMTRTLNAYMDKEGYSK--------------------------------KAKVSATGDDA 315 ++TRTLN+ K K + +S +G+ Sbjct: 312 SLTRTLNSLAKKLKVIKVKGYIIYSSPWIETKFKYSSALKRHALRTINNEKDISLSGEHV 371 Query: 316 REGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKI 375 REGL +VSVKVP+P+F QTK +L + EV+ V+Q + E L EYL +P + ++ K Sbjct: 372 REGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEYLELHPDVLESIISKS 431 Query: 376 IDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQG 435 ++A +A AA+RARE+ R K L + LPGKLADC DPA SE+++VEGDSAGGSAKQG Sbjct: 432 LNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPAESEIFIVEGDSAGGSAKQG 491 Query: 436 RNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 495 R+R+ QAILPL+GKILN+E+ M ++E+ LI LG G+ +++N + LRYH III Sbjct: 492 RDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFNKENLRYHKIII 551 Query: 496 MTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQY 555 +TDADVDG+HIRTLLLTFF+R + + G +Y+ PPL+KV++GKQ Y DD A+ + Sbjct: 552 LTDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVERGKQAHYCYDDAALKKI 611 Query: 556 QISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTL 615 S N GE + + +N R + ++ + + Sbjct: 612 TASF---PGNASYNIQRFKGLGEMMPA-----QLWETTMNPDTRILKQLVVDDAAETNMV 663 Query: 616 TEADLSDEQTVTRWV 630 + + V + + Sbjct: 664 FSSLMGARVDVRKEL 678 Score = 118 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 43/156 (27%), Positives = 70/156 (44%), Gaps = 3/156 (1%) Query: 652 HTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGE 711 N E + I+ + VD + Y+R + + +ERG+ Sbjct: 538 DFNKENLRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVERGK 597 Query: 712 RRQPVASFEQALDWLVKE-SRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDA 770 + +IQR+KGLGEM P QLWETTM+P++R + ++ V DA Sbjct: 598 QAHYCYDDAALKKITASFPGNASYNIQRFKGLGEMMPAQLWETTMNPDTRILKQLVVDDA 657 Query: 771 IAADQLFTTLMGDAVEPRRAFIEENA--LKAANIDI 804 + +F++LMG V+ R+ I+ A + N+DI Sbjct: 658 AETNMVFSSLMGARVDVRKELIKSAATRMNLENLDI 693 >UniRef50_B7G298 Predicted protein n=3 Tax=cellular organisms RepID=B7G298_PHATR Length = 727 Score = 641 bits (1653), Expect = 0.0, Method: Composition-based stats. Identities = 274/610 (44%), Positives = 373/610 (61%), Gaps = 32/610 (5%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 + SY + I VLKGLD VRKRPGMYIG T GLHH+V+EVVDN +DEALAGH + Sbjct: 63 AQSYGAGQITVLKGLDPVRKRPGMYIGSTG-PDGLHHLVWEVVDNCVDEALAGHATFVTT 121 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDD----NSYKVSGGLHG 117 TIHAD S++V DDGRGIPT +H E G SA E ++T LHAGGKFD+ + YKVSGGLHG Sbjct: 122 TIHADGSLTVTDDGRGIPTDLHSETGKSALETVLTELHAGGKFDNQGSNSGYKVSGGLHG 181 Query: 118 VGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGE------TEKTGTMVRFWP 171 VG+SVVNALS+ + + + R ++++ +E GVP PL + K+GT V F P Sbjct: 182 VGISVVNALSEFVHVKVDRTPELYQMRFERGVPTGPLQNLDKLKTLLSKRKSGTSVTFLP 241 Query: 172 SLETFTNVTE-----FEYEILAKRLRELSFLNSGVSIRLRDKRD----GKEDHFHYEGGI 222 L+ F F+ L R+ E+++LN+G+ + L+D+R G+ F++ GG+ Sbjct: 242 DLKVFKGDNGKPDITFDSSRLKGRMDEIAYLNAGLVLTLKDERKSPGRGRLQVFYHAGGL 301 Query: 223 KAFVEYLNKNKTPIHPNIFY------FSTEKDGIGVEVALQWN-DGFQENIYCFTNNIPQ 275 + E L + KTP+ +KD + AL+W+ D + E+I F NNI Sbjct: 302 AEYAELLCRTKTPLFQGTTSSRKKKPARKQKDSASDDDALRWSSDMYAESILSFCNNIRT 361 Query: 276 RDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQ 335 RDGG+H+ G +A +TRT+N + +K+ + G+ REGL A+VSV V +P+F Q Sbjct: 362 RDGGSHVEGLKACLTRTVNQAAKRSNKAKEGAANLPGEFIREGLTAIVSVSVSEPEFEGQ 421 Query: 336 TKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRK 395 TK +L + EV+ AV+ ++ L + P + K A A AA+ AR+M RRK Sbjct: 422 TKGRLGNPEVRPAVDSLLSAELTKLFDFRPEILDAIYNKASSAQAAAAAAKAARDMVRRK 481 Query: 396 GALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 455 L LPGKLADC RDP SE+++VEGDSA GSAKQGR+R+ QAILPL+GKILN+E+ Sbjct: 482 TLLTSTILPGKLADCASRDPEESEIFIVEGDSAAGSAKQGRDRRTQAILPLRGKILNIER 541 Query: 456 ARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFY 515 A +++ + E+ LI+ALG G+ E++P LRY I+IMTDADVDG+HIR LLLTFFY Sbjct: 542 AATERIYQNTELQGLISALGLGVKGSEFDPKSLRYGRIVIMTDADVDGAHIRVLLLTFFY 601 Query: 516 RQMPEIVERGHVYIAQPPLYKVKKG----KQEQYIKDDEAMDQYQISI-ALDGATLHTNA 570 R E+VE GHVYIAQPPLYKV G ++E Y +D + + A +L Sbjct: 602 RYQRELVENGHVYIAQPPLYKVSVGSGRSRKEGYAFNDTERNTVMMQALAAGKVSLQRFK 661 Query: 571 SAPALAGEAL 580 + E L Sbjct: 662 GLGEMMPEQL 671 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 52/162 (32%), Positives = 78/162 (48%), Gaps = 11/162 (6%) Query: 652 HTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIE--- 708 + + + IV + VD + + YR L E + + + Sbjct: 568 EFDPKSLRYGRIVIMTDADVDGAHI--RVLLLTFFYRYQRELVENGHVYIAQPPLYKVSV 625 Query: 709 ---RGERRQPVASFEQALDWLVK-ESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLR 764 R + + + +++ + +S+QR+KGLGEM PEQLW TTMDPE R ML+ Sbjct: 626 GSGRSRKEGYAFNDTERNTVMMQALAAGKVSLQRFKGLGEMMPEQLWSTTMDPERRTMLQ 685 Query: 765 VTVKDAIAADQLFTTLMGDAVEPRRAFIEENA--LKAANIDI 804 VTV DA ADQ + LMGD V PR+ FI A L+ ++D+ Sbjct: 686 VTVNDASMADQTLSILMGDTVAPRKEFISTQAETLRVDDLDL 727 >UniRef50_Q2S2H3 Type II DNA topoisomerase, B subunit n=3 Tax=Bacteria RepID=Q2S2H3_SALRD Length = 643 Score = 638 bits (1645), Expect = 0.0, Method: Composition-based stats. Identities = 254/643 (39%), Positives = 386/643 (60%), Gaps = 13/643 (2%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 M +Y I VL+GL+ VRKRPGMYIG T GLHH+++EVVDNA+DEA G+ I Sbjct: 1 MPTTYTGEDIDVLEGLEPVRKRPGMYIGGTGR-PGLHHILWEVVDNAVDEATNGYASRIE 59 Query: 61 VTIHADN-SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 119 V +H D S+SV D+GRGIP HPE+GV ++I+T LH+GGKFD ++Y SGGLHGVG Sbjct: 60 VVLHEDGESISVSDNGRGIPVDDHPEKGVPTVQLILTTLHSGGKFDGSNYITSGGLHGVG 119 Query: 120 VSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTN 178 VSVVNALS++L ++R+G+ ++Q + G P L T E+ + TGT + F P + F + Sbjct: 120 VSVVNALSEELVATVKRDGQEYQQRFRQGTPVTGLDTTKESARGTGTDIYFRPDPDIFES 179 Query: 179 VTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKN--KTPI 236 V EF+ + + L ++LN + I RD+ + H+EGGI+ +++YL ++ +PI Sbjct: 180 V-EFDPSWIREHLDVKTYLNRDLKIIFRDETSNERYELHHEGGIQEYLDYLVEDLQVSPI 238 Query: 237 HPNIFYFSTEKDGIGV--EVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLN 294 H ++F + E+ALQW D +E ++ F N IP DGGTH G ++ + + Sbjct: 239 HDDVFMMEDDDLDGDGRLEIALQWTDAPKEQLHTFVNGIPTEDGGTHEQGLKSGIRAVIR 298 Query: 295 AYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMN 354 ++MD ++ GDD REGL+ +V++ DP+F QTKDKL + V+S V + Sbjct: 299 SFMDTHDLVP-HRLEIKGDDTREGLVGIVNLFHVDPQFQGQTKDKLNNPSVRSQVSGALR 357 Query: 355 ELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLA-GLPGKLADCQER 413 L +YL ++ + + + +++ AA+AR A R A + + LPGKLADC Sbjct: 358 TELEQYLNDHSSTGEAIASRVVQAAKARRARRSASGGSSGRSGSKSRLQLPGKLADCSSS 417 Query: 414 DPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITA 473 P+ EL++VEGDSAGGSAKQ R+R+ QA+LPL+GK+LN E+A D++ +++E++ ++ A Sbjct: 418 TPSECELFIVEGDSAGGSAKQARDRETQAVLPLRGKVLNAEQATLDRVQNNKELSNIVQA 477 Query: 474 LGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPP 533 LGCGIG D + LRY +I++ DAD DG HI TLLLTFFYR M ++E G V+IAQPP Sbjct: 478 LGCGIG-DALDLSDLRYRKVILLMDADSDGHHIATLLLTFFYRYMRPLIEGGFVHIAQPP 536 Query: 534 LYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKM 593 LY+++ GK+ + D+ +Q I DG + + GE + ++E + + Sbjct: 537 LYRIEAGKETHWALDEPDKEQILDEIRSDGRNPNVDIQRFKGLGEMMPDTLNETTLSPEG 596 Query: 594 INRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSE 636 +E P + ++ + T+TE D +++ +E Sbjct: 597 RRLLEVSIPDT--ERMVTEQTITELMGRDSSARFKFIMQHAAE 637 Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats. Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 8/132 (6%) Query: 681 FITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQ-----ALDWLVKESRR-GL 734 + YR + L E + + ++ + ++ LD + + R + Sbjct: 512 LLLTFFYRYMRPLIEGGFVHIAQPPLYRIEAGKETHWALDEPDKEQILDEIRSDGRNPNV 571 Query: 735 SIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIA--ADQLFTTLMGDAVEPRRAFI 792 IQR+KGLGEM P+ L ETT+ PE RR+L V++ D +Q T LMG R FI Sbjct: 572 DIQRFKGLGEMMPDTLNETTLSPEGRRLLEVSIPDTERMVTEQTITELMGRDSSARFKFI 631 Query: 793 EENALKAANIDI 804 ++A +A +D+ Sbjct: 632 MQHAAEADELDV 643 >UniRef50_B3TAI0 Putative DNA gyrase B n=1 Tax=uncultured marine microorganism HF4000_APKG8D23 RepID=B3TAI0_9ZZZZ Length = 646 Score = 636 bits (1641), Expect = 0.0, Method: Composition-based stats. Identities = 295/635 (46%), Positives = 414/635 (65%), Gaps = 17/635 (2%) Query: 25 MYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHP 84 M++GD DG+ LHH ++EVVDNA+DE LAG+ + V + + SV+V D GRGIP G P Sbjct: 1 MFLGDPHDGSALHHCIWEVVDNAVDEHLAGYNSTVEVNLEKNGSVTVIDHGRGIPVGKIP 60 Query: 85 EEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQI 144 EEGVSAAEVIMT LHAGGKFD+ +YKV+GGLHGVGVS VNA+S+KL + I R+GK+ Q Sbjct: 61 EEGVSAAEVIMTKLHAGGKFDNKAYKVAGGLHGVGVSAVNAVSEKLSMTIHRDGKVWTQN 120 Query: 145 YEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIR 204 + G +A L TG+T TGT + F P ++ F++VT+F++E + RLR +FLN+G+ I Sbjct: 121 FVRGKRKAVLKATGKTTSTGTTINFKPDMKIFSDVTDFDFEQINTRLRRTAFLNAGLQIW 180 Query: 205 LRDKR--DGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDG----IGVEVALQW 258 LRD R D E Y+GG++ +VE +N+ K IH + + KDG + VEVALQW Sbjct: 181 LRDFRGQDTVEIEHKYDGGLRQYVESMNEKKKAIHDEVIHILGSKDGDKGEVLVEVALQW 240 Query: 259 NDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREG 318 D + E+I+CFTN I DGG HL+G ++++TRT+N+Y K S +GDD REG Sbjct: 241 TDAYSESIHCFTNIIHNTDGGAHLSGLKSSLTRTVNSYAQSRKLLK-NVSSLSGDDVREG 299 Query: 319 LIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDA 378 L AV+S+K PDP F++QTK KLV+SEV VEQ +N+ L +Y ENP A+ +V K++ A Sbjct: 300 LSAVISIKHPDPSFNAQTKAKLVTSEVAGIVEQIVNDKLGDYFEENPAVARSIVEKVVLA 359 Query: 379 ARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNR 438 ++AREAAR+AR++TRRKG L+ GLPG+LADCQ RDPA ELY+VEG+SAGGSAK R+R Sbjct: 360 SKAREAARKARDLTRRKGVLEGGGLPGQLADCQSRDPAECELYIVEGESAGGSAKTARDR 419 Query: 439 KNQAILPLKGKILNVEKA--RFDKMLSSQEVATLITALGCGIGRDE-----YNPDKLRYH 491 + QA+LPL+GKILNVE+ K+ S++++ +I ALG G+G +E ++P+KLRY Sbjct: 420 RTQAVLPLRGKILNVERQQRNLTKVFSNEQIQRMIRALGAGVGNEEEDEGAFDPEKLRYG 479 Query: 492 SIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEA 551 IIIMTDAD+DG+HIRTL+LTF +R M + G+VYIA PPL+ V +GK +++ ++ Sbjct: 480 KIIIMTDADIDGAHIRTLILTFMWRFMRRAIANGNVYIAAPPLFSVSRGKHTEWVHTEKD 539 Query: 552 MDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIY 611 D + + T N GE + + + + + + P+ + Sbjct: 540 RDAVVKRLQKEAPTAKINVQRYKGLGEMNPEQLWQTTMDPESRTMFQVKMPEKPSEVRFT 599 Query: 612 QPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQ 646 +SDE+ V VN L S L ++ + Sbjct: 600 DV---GEQMSDEEAVEGEVNELFSILMGEDVPDRR 631 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 54/212 (25%), Positives = 93/212 (43%), Gaps = 34/212 (16%) Query: 619 DLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLD 678 + + + R + AL + + ++E+ + + E+ + I+ + +D + Sbjct: 443 KVFSNEQIQRMIRALGAGVGNEEED------EGAFDPEKLRYGKIIIMTDADIDGAHI-- 494 Query: 679 HEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS-FEQALDWLVKESRR----- 732 I +R + + + E+ D +VK ++ Sbjct: 495 RTLILTFMWRFMRRAIANGNVYIAAPPLFSVSRGKHTEWVHTEKDRDAVVKRLQKEAPTA 554 Query: 733 GLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI--------------------A 772 +++QRYKGLGEMNPEQLW+TTMDPESR M +V + + Sbjct: 555 KINVQRYKGLGEMNPEQLWQTTMDPESRTMFQVKMPEKPSEVRFTDVGEQMSDEEAVEGE 614 Query: 773 ADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 ++LF+ LMG+ V RRAFIE+NA K +D+ Sbjct: 615 VNELFSILMGEDVPDRRAFIEKNASKVTALDV 646 >UniRef50_C4G1I8 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G1I8_ABIDE Length = 677 Score = 620 bits (1599), Expect = e-176, Method: Composition-based stats. Identities = 246/545 (45%), Positives = 351/545 (64%), Gaps = 13/545 (2%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 MS +YD S I +L+GL+AVRKRPGMYIG T GLHH+++E++DN IDE LAG C +I Sbjct: 1 MSENYDGSQIVILEGLEAVRKRPGMYIGSTGT-RGLHHLIWEILDNGIDEHLAGFCSQID 59 Query: 61 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 + + D ++++D GRG+P IHP + + V+ TVLHAGGKF +YKVSGGLHGVG Sbjct: 60 LILRNDGGITIRDYGRGVPVDIHPTKKIPTERVVYTVLHAGGKFSGGAYKVSGGLHGVGA 119 Query: 121 SVVNALSQKLELVIQREGKIHRQIYEHG--------VPQAPLAVTGETEKTGTMVRFWPS 172 SVVNALS K+ + I+R+G ++ YE+G + P T + GT V F+P Sbjct: 120 SVVNALSTKMIVEIRRDGNVYVDEYENGGHPVTALVKGELPAVKTCKKSDKGTSVTFYPD 179 Query: 173 LETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKN 232 F EF+ +I+ K+L+E +FLN G+ + +D+ G+E + + GIK++V+Y+N+ Sbjct: 180 DTIF-ETIEFKADIIKKKLKETAFLNKGLKLNFKDEITGEEKTYEEKDGIKSYVKYINRE 238 Query: 233 KTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRT 292 IH + Y E I VEVA Q+ +GF E I + N I DGGT + GF+ A+TR Sbjct: 239 TEVIHDEVVYVEGESGDIEVEVAFQYTNGFSEQINAYCNRINVVDGGTLVTGFKTALTRV 298 Query: 293 LNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQ 352 +N Y + GY K + G D R G++A++S+K PDP+F QTK KL +++ K+AVE+ Sbjct: 299 MNQYARELGYLKGKDDNFDGKDIRNGIVAIISIKHPDPQFEGQTKTKLGNTDAKTAVEEV 358 Query: 353 MNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQE 412 +++ + Y +N K ++ + AR A+ +AR + +L+ + KLA C Sbjct: 359 VSKEIVRYFDKNIEVLKSILDLAQKSYSARTASDKARNAVLK--SLNDFDVKSKLASCSS 416 Query: 413 RDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 472 ++ E+YLVEGDSAGG+ K RNRK QA+LPL+GKILNVEKA +K+L + E+ ++I Sbjct: 417 KNAEECEIYLVEGDSAGGTVKTARNRKTQAVLPLRGKILNVEKAALEKILVNNEIKSMIA 476 Query: 473 ALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQP 532 GCGIG DE++ KLRY III+TDADVDG+HI TLLLTFFYR MP++++ G +Y P Sbjct: 477 TFGCGIG-DEFDITKLRYDKIIILTDADVDGAHISTLLLTFFYRFMPDLIKEGKIYRGLP 535 Query: 533 PLYKV 537 PLYKV Sbjct: 536 PLYKV 540 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 69/275 (25%), Positives = 118/275 (42%), Gaps = 31/275 (11%) Query: 547 KDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAML 606 K+ E + Y + G T+ T A +A+ L + +K +E+ + Sbjct: 417 KNAEECEIYLVEGDSAGGTVKT---ARNRKTQAVLPLRGKILNVEKA--ALEKILVNNEI 471 Query: 607 KELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQ-----WKFDVHTNAEQNLFE 661 K +I + DE +T+ + L D + G+ F + Sbjct: 472 KSMI---ATFGCGIGDEFDITKLRYDKIIILTDADVDGAHISTLLLTFFYRFMPDLIKEG 528 Query: 662 PIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERR-------- 713 I R G+ Y +D+E +G + LGE + + + E++ Sbjct: 529 KIYR----GLPPLYKVDYE-ESGAKVLEEKKLGEGQLDIFQLGVEDKPSEKQLKAKSGKK 583 Query: 714 ----QPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKD 769 + + + + + ++R+ L IQRYKGLGEM+ QLWETT+DP++R + R+ + D Sbjct: 584 KKKSEYIFNDYELEKFKKNKNRKILEIQRYKGLGEMDASQLWETTLDPKTRSLARIDISD 643 Query: 770 AIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 + AD++ + LM V PRR FI A K A +DI Sbjct: 644 TVEADEVTSLLMSSVVPPRREFIMNEA-KYAKVDI 677 >UniRef50_D1BTM8 DNA topoisomerase (ATP-hydrolyzing) n=8 Tax=Actinobacteria (class) RepID=D1BTM8_XYLCX Length = 715 Score = 614 bits (1584), Expect = e-174, Method: Composition-based stats. Identities = 239/659 (36%), Positives = 353/659 (53%), Gaps = 68/659 (10%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 +Y + + VL+GL+AVRKRPGMYIG TD GL H ++E++DN++DEAL G +I V Sbjct: 14 KNYTARHLSVLEGLEAVRKRPGMYIGSTD-SRGLMHCLWEIIDNSVDEALGGFATKIAVV 72 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 +HAD+SV+V DDGRGIP + P+ G+S EV+ T LHAGGKF SY SGGLHGVG SV Sbjct: 73 LHADSSVTVTDDGRGIPVDVEPKTGLSGVEVVFTKLHAGGKFGGGSYTASGGLHGVGASV 132 Query: 123 VNALSQKLELVIQREGKIHRQIYEHGVP---------------------QAPLAVTGETE 161 VNALS +L++ + R GK +R + G P ++ LAV G + Sbjct: 133 VNALSARLDVEVDRGGKTYRMTFHRGEPGTFADGPAGASPESAFSPFIERSELAVVGRAK 192 Query: 162 K--TGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKR---------D 210 + TGT VR+W + F F Y+ L R+R+ +FL G+ I +RD+R Sbjct: 193 RGVTGTRVRYWADRQIFPKSAVFSYDELVTRVRQTTFLVPGLEITVRDERGLPGTPGADG 252 Query: 211 GKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTE-------------------KDGIG 251 E+ F + GG FV++L + S + Sbjct: 253 PHEEMFVHHGGAVDFVDFLAPDAPVTATWTLRGSETFTETVPVLDERGHMSPREVQRDCE 312 Query: 252 VEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGY-----SKKA 306 V++AL+W G+ + F N I GG+HL GF + + + ++ +K Sbjct: 313 VDIALRWGTGYDTELRTFVNIIATPKGGSHLTGFEQGLVKVVRKQVEANARRLKISAKDG 372 Query: 307 KVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYL----L 362 DD GL AVV+V++ +P+F QTK+ L ++ V++ V + + + L L Sbjct: 373 GERLEKDDITAGLTAVVTVRLAEPQFEGQTKEVLGTAPVRAIVARTVEKQLGAILTSTKR 432 Query: 363 ENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYL 422 ++ A +++ K++ RAR +AR+ +E++RRK AL+ + LP KLADC+ D SEL++ Sbjct: 433 DDKAQASLLLDKVVAEMRARVSARKQKEISRRKNALETSSLPAKLADCRSDDVERSELFI 492 Query: 423 VEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDE 482 VEGDSA G+AK R+ QA+LP++GKILNV+KA ML + E A +I LG G GR Sbjct: 493 VEGDSALGTAKLARSSDFQALLPIRGKILNVQKASISDMLRNAECAAIIQVLGAGSGR-S 551 Query: 483 YNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK---- 538 ++ D RY +++MTDADVDG+HIRTLLLT FYR M +VE G V+ A PPL++++ Sbjct: 552 FDLDAARYGKVVLMTDADVDGAHIRTLLLTLFYRYMRPLVEAGRVFAAVPPLHRIEVYGA 611 Query: 539 --KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMIN 595 KG + Y + + + G + GE ++E + Sbjct: 612 RGKGNEYIYTYSEAELQATLKRLDRAGKRYKDDIQRYKGLGEMDADQLAETTMDPRHRT 670 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 51/164 (31%), Positives = 77/164 (46%), Gaps = 12/164 (7%) Query: 652 HTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIE--- 708 + + + +V + VD + Y R ++ + IE Sbjct: 551 SFDLDAARYGKVVLMTDADVDGAHIRTLLLTLFYRYMRPLVEAGRVFAAVPPLHRIEVYG 610 Query: 709 -RGERRQPVASFEQA-----LDWLVKESRR-GLSIQRYKGLGEMNPEQLWETTMDPESRR 761 RG+ + + ++ +A L L + +R IQRYKGLGEM+ +QL ETTMDP R Sbjct: 611 ARGKGNEYIYTYSEAELQATLKRLDRAGKRYKDDIQRYKGLGEMDADQLAETTMDPRHRT 670 Query: 762 MLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENA--LKAANID 803 + RVT + A AA+++F LMG V PR+ FI A L + ID Sbjct: 671 LRRVTAQHAEAAERVFELLMGSDVAPRKDFIISGAESLDRSRID 714 >UniRef50_P50028 DNA gyrase subunit B n=331 Tax=cellular organisms RepID=GYRB_MYCCT Length = 643 Score = 614 bits (1583), Expect = e-174, Method: Composition-based stats. Identities = 264/637 (41%), Positives = 396/637 (62%), Gaps = 24/637 (3%) Query: 1 MSNS--YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKE 58 M+ + YD S+I+VL+GL+AVRKRPGMYIG TD+ GLHH+V+E+VDNAIDEALAG+C + Sbjct: 1 MAENKKYDESAIQVLEGLEAVRKRPGMYIGSTDN-KGLHHLVWEIVDNAIDEALAGYCTQ 59 Query: 59 IIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 118 I V + DNS++V D+GRGIPTG+H + G EVI +VLHAGGKFD +YK SGGLHGV Sbjct: 60 IDVILEKDNSITVIDNGRGIPTGMH-KTGKPTPEVIFSVLHAGGKFDSTAYKSSGGLHGV 118 Query: 119 GVSVVNALSQKLELVIQREGKIHRQIYEHG-VPQAPLAVTGETEKTGTMVRFWPSLETFT 177 G SV NALS++ + +I R+ KIH +++G + PL T KTGT + F P F+ Sbjct: 119 GSSVTNALSKRFKAIIYRDKKIHEIEFKNGGKLEKPLTFINTTYKTGTTINFLPDDTIFS 178 Query: 178 NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIH 237 N +F + ++++RL+E + LNSG+ I L D + + ++ G+ FV+ L +KTP+ Sbjct: 179 N-AKFNFSLISERLKESALLNSGLKITLSDLISNRYVEYQFQDGLVEFVKELVDDKTPV- 236 Query: 238 PNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYM 297 +I + E I VE+ALQ+ + E I F NN+ DGGTHL GF++ + R +N Y Sbjct: 237 TDIITINNESKNIIVEIALQYTEDDNEIILGFANNVKTIDGGTHLVGFKSGLIRAINDYA 296 Query: 298 DKEGYSKKAKVSATGDDAREGLIAVVSVKVPDP--KFSSQTKDKLVSSEVKSAVEQQMNE 355 + K K +D REGL+A+V+VK+P+ ++ QTK KL +S+ K+ VEQ + E Sbjct: 297 KDQKILKD-KTKLDSNDLREGLVAIVTVKIPENLIEYEGQTKSKLGTSDAKTVVEQIVYE 355 Query: 356 LLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRR-KGALDLAGLP-GKLADCQER 413 ++ +L+EN A V+ ++A +AR AA++AR+ + KG ++ L GKL Q + Sbjct: 356 FMSYWLIENKVLANKVIENALNAQKARIAAKQARQAIKSVKGKKNVNKLMLGKLTPAQGK 415 Query: 414 DPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITA 473 L+ELYLVEGDSAGGSAK GR+R QAILPL+GK++N EKA+ +L ++E+ ++I A Sbjct: 416 KRELNELYLVEGDSAGGSAKSGRDRNFQAILPLRGKVINSEKAKLVDLLKNEEIQSIINA 475 Query: 474 LGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPP 533 +G G+G+D ++ + Y IIIMTDAD DG+HI+TLLLTFFYR M +++ VYIA PP Sbjct: 476 IGAGVGKD-FDISDINYGKIIIMTDADTDGAHIQTLLLTFFYRHMKDLIIHKKVYIALPP 534 Query: 534 LYKVK-KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQK 592 LYK+ K Y+ D+E ++++ + + + + L Q Sbjct: 535 LYKITFNDKSFIYLWDEEELNKFNKT-NTKKYEIQRYKGLGEMNADQL---------WQT 584 Query: 593 MINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRW 629 ++ R+ + + + + + + + D+ + Sbjct: 585 TMDPKNRKIIQVTISDGLLAERMFKTLMGDDVEKRKL 621 Score = 132 bits (331), Expect = 8e-29, Method: Composition-based stats. Identities = 48/181 (26%), Positives = 84/181 (46%) Query: 623 EQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFI 682 + V+ L +E + + + I+ + D + Sbjct: 454 NSEKAKLVDLLKNEEIQSIINAIGAGVGKDFDISDINYGKIIIMTDADTDGAHIQTLLLT 513 Query: 683 TGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGL 742 + + + +K+ L I ++ E+ L+ K + + IQRYKGL Sbjct: 514 FFYRHMKDLIIHKKVYIALPPLYKITFNDKSFIYLWDEEELNKFNKTNTKKYEIQRYKGL 573 Query: 743 GEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANI 802 GEMN +QLW+TTMDP++R++++VT+ D + A+++F TLMGD VE R+ +I+EN Sbjct: 574 GEMNADQLWQTTMDPKNRKIIQVTISDGLLAERMFKTLMGDDVEKRKLWIQENVKFTLED 633 Query: 803 D 803 D Sbjct: 634 D 634 >UniRef50_D2NTW6 Type IIA topoisomerase, B subunit n=10 Tax=Actinomycetales RepID=D2NTW6_9MICC Length = 724 Score = 609 bits (1571), Expect = e-172, Method: Composition-based stats. Identities = 244/696 (35%), Positives = 362/696 (52%), Gaps = 63/696 (9%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 S++Y + + VL+GL+AVRKRPGMYIG TD GL H ++E++DN++DEALAG + I V Sbjct: 27 SSNYTARHLSVLEGLEAVRKRPGMYIGSTD-SRGLMHCLWEIIDNSVDEALAGFGQSIQV 85 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 ++ D SV V+DDGRGIPT I P G+S EV+ T LHAGGKF SY SGGLHGVG S Sbjct: 86 ILYRDGSVEVRDDGRGIPTDIEPRTGLSGVEVVFTKLHAGGKFGGGSYNASGGLHGVGAS 145 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVP---------------------QAPLAVTGET 160 VVNALS +L++ + R K ++ + HG+P L + G Sbjct: 146 VVNALSSRLDVQVDRGSKTYQMSFRHGIPGFFESGRTPKPEDPFTPATEGTDALQIVGRA 205 Query: 161 EK--TGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKR--------- 209 ++ TGT VR+W + FT +F YE LA R+R+ +FL G+ I +RD+R Sbjct: 206 KRGVTGTRVRYWADPQIFTPDAKFSYEDLAARVRQTAFLIPGLRICIRDERRLPGTPGEL 265 Query: 210 DGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTE-------------------KDGI 250 + E+ F Y+GGI FVE+L ++ F S + Sbjct: 266 EPHEEVFQYDGGISEFVEFLAHDERITDTWRFSGSGSFTETVPVLGEDGRSQLTDVERDC 325 Query: 251 GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK-AKVS 309 V+VAL+W G++ + F N I GGTH GF + R + ++ K Sbjct: 326 EVDVALRWGIGYETTVRSFVNIIATPKGGTHTTGFEQGLLRVMRKHLADNARKYKVGNDK 385 Query: 310 ATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLEN----P 365 DD GL AV++V++ +P+F QTK+ L + V+ V + + + L L Sbjct: 386 IEKDDVLAGLTAVLTVRLAEPQFEGQTKEILGTPAVRQIVSKVVGDALKARLESTARAEK 445 Query: 366 TDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 425 A + K++ + R +AR +E RRK AL+ + +P KL DC+ + SEL++VEG Sbjct: 446 AQAAALCEKVVSEMKTRVSARIHKETQRRKTALESSSMPTKLVDCRSTNVEHSELFIVEG 505 Query: 426 DSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNP 485 DSA G+A+ R+ QA+LP++GKILN ++A +L++ E A LI +G G GR ++ Sbjct: 506 DSALGTARLARSSSYQALLPIRGKILNTQRASVTDVLANAECAALIQVIGAGSGR-TFDL 564 Query: 486 DKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK-----KG 540 D RY +I+MTDADVDG+HIRTLLLT FYR M ++E G VY A PPL++V+ K Sbjct: 565 DSARYGKVIMMTDADVDGAHIRTLLLTLFYRYMRPLIEAGRVYAAVPPLHRVEVVRRGKP 624 Query: 541 KQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERR 600 + Y ++ + + S+ G + GE ++E + R Sbjct: 625 NEMVYTYSEKQLHELLDSLQEQGVSYKEPIQRYKGLGEMDADQLAETTMDPRHRMLRRIR 684 Query: 601 YPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSE 636 A E + + ++ + + L +E Sbjct: 685 IEDAEAAERAFSLLMGSEVAPRKEFIIAGAHQLDTE 720 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 49/166 (29%), Positives = 78/166 (46%), Gaps = 15/166 (9%) Query: 652 HTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDA-----F 706 + + + ++ + VD + + YR + L E R Sbjct: 561 TFDLDSARYGKVIMMTDADVDGAHI--RTLLLTLFYRYMRPLIEAGRVYAAVPPLHRVEV 618 Query: 707 IERGERRQPVASFEQ-----ALDWLVKESRRGLS-IQRYKGLGEMNPEQLWETTMDPESR 760 + RG+ + V ++ + LD L ++ IQRYKGLGEM+ +QL ETTMDP R Sbjct: 619 VRRGKPNEMVYTYSEKQLHELLDSLQEQGVSYKEPIQRYKGLGEMDADQLAETTMDPRHR 678 Query: 761 RMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENAL--KAANIDI 804 + R+ ++DA AA++ F+ LMG V PR+ FI A +ID+ Sbjct: 679 MLRRIRIEDAEAAERAFSLLMGSEVAPRKEFIIAGAHQLDTESIDM 724 >UniRef50_B9ZQ26 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZQ26_9GAMM Length = 650 Score = 607 bits (1564), Expect = e-172, Method: Composition-based stats. Identities = 256/593 (43%), Positives = 365/593 (61%), Gaps = 19/593 (3%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 + Y S SI+VL+GL+ VRKRPGMYIG TD +GL H++ E++DNA+DEA+AGH EI V Sbjct: 8 ARQYTSESIQVLEGLEPVRKRPGMYIGGTD-SSGLRHLLNEILDNAVDEAIAGHGDEIEV 66 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 H D S SV D+GRGIP +H E+G+ AA +++T LHAGGKFD+ +YKVSGGLHGVG + Sbjct: 67 VFHQDGSYSVNDNGRGIPIDMHREKGMHAAALLVTTLHAGGKFDNAAYKVSGGLHGVGAA 126 Query: 122 VVNALSQKLELVIQREGKIHRQIY-EHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVT 180 V NA+S + ++ I+R+G+ ++Q + E G P P TGT++RFWP L F Sbjct: 127 VTNAMSTRFDMDIRRDGQRYQQTFTEGGAPSDPEIKRYTGSYTGTLIRFWPDLARFDEDA 186 Query: 181 EFEYEILAKRLRELSFLNSGVSIRLRDK------RDGKEDHFHYEGGIKAFVEYLNKNKT 234 E +++ +A R++ ++L G+ + +R++ + ++ F +E +E L+ + Sbjct: 187 EIDFDFMADRMKRTAYLVPGLQLSIREEVASEGGDEPRQAVFRFES-FSQIIEDLSVDSG 245 Query: 235 PIHPNIFYFST-----EKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 I + + I V VAL+W++ + + + N IP D GTH+ G R A+ Sbjct: 246 DAISEIIEADSAEHIDGQGEIEVAVALRWHERNRTVLAGYANIIPTAD-GTHMTGLRKAV 304 Query: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 T+ +N Y + + + GDD + GLIA V+V++ DP F QTK+KL + V V Sbjct: 305 TQAVNNYAEANNLLRGNQ-ELKGDDIQAGLIAAVAVRLADPLFQGQTKEKLKNGPVTGVV 363 Query: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREM-TRRKGALDLAGLPGKLA 408 + + L ENP A+ +V K A +AREAA +A EM RK + LPGKLA Sbjct: 364 SRAIRAALDHAFEENPKMARAIVEKAKLAQKAREAADKAAEMVVNRKSVISATALPGKLA 423 Query: 409 DCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 468 DCQE+DP+ SEL++VEGDSAGGSAK GR R+ QAILPLKGKILN +A K+L S EV Sbjct: 424 DCQEQDPSKSELFIVEGDSAGGSAKSGREREYQAILPLKGKILNTYRADPAKVLKSDEVK 483 Query: 469 TLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVY 528 L+ ALGCG + ++ +KLRYH I+I+ DAD DG HI TL+LT+F+ PE++E G+VY Sbjct: 484 NLMLALGCGP-KSHFDLEKLRYHRIVILADADSDGHHIATLVLTYFHTNAPELIESGYVY 542 Query: 529 IAQPPLYKVKKGKQEQYIKDDEAMDQYQISIAL-DGATLHTNASAPALAGEAL 580 IA PPLY+V+KGKQ Y+KDD ++ + D + + E L Sbjct: 543 IALPPLYRVRKGKQSAYLKDDRELEAFMAQQKNPDKWQVQRFKGLGEMNAEQL 595 Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 42/107 (39%), Positives = 62/107 (57%), Gaps = 4/107 (3%) Query: 701 LEEDAFIERGERRQPVASFEQALDWL-VKESRRGLSIQRYKGLGEMNPEQLWETTMDPES 759 L + +G++ + + ++ +++ +QR+KGLGEMN EQLWE MDPE+ Sbjct: 545 LPPLYRVRKGKQSAYLKDDRELEAFMAQQKNPDKWQVQRFKGLGEMNAEQLWEAAMDPET 604 Query: 760 RRMLRVTVKDA--IAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 RR+ RV + +++F LMG V PRRAFIEE A KA ID+ Sbjct: 605 RRIARVQYSEQGREGDNEVFEVLMGAEVPPRRAFIEEYAEKAV-IDV 650 >UniRef50_C6PY14 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PY14_9CLOT Length = 653 Score = 602 bits (1553), Expect = e-170, Method: Composition-based stats. Identities = 248/658 (37%), Positives = 380/658 (57%), Gaps = 34/658 (5%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 YD +++ L+ L+ VR RPGMYIG T GLHH ++E++DN+IDE G + IV Sbjct: 9 QVYDVTALTSLEKLEPVRVRPGMYIGSTG-SKGLHHCIWEILDNSIDEISNGFGDKAIVI 67 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 ++ D SV++ D+GRGIPTGIHP + S E++ T LH GGKF+++ YK SGGLHGVG +V Sbjct: 68 LNKDKSVTIIDNGRGIPTGIHPVKKKSGVEMVFTELHTGGKFNNDVYKTSGGLHGVGAAV 127 Query: 123 VNALSQKLELVIQREGKIHRQIYEH-----------GVPQAPLAVTGETEKTGTMVRFWP 171 VNALS+ + + I++ G I+ Q +E+ G P L + G T++TGT V F P Sbjct: 128 VNALSKWVVVEIKQNGHIYTQRFEYAYDKSLKRDMPGTPVTALKIAGNTKETGTKVTFLP 187 Query: 172 SLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK--EDHFHYEGGIKAFVEYL 229 + F+N TEF+++++ +RL+EL+F N G+++++ DKR+ + E +H E G+ F+EYL Sbjct: 188 DKDVFSN-TEFKFDVIDERLQELAFQNKGITLKIIDKREDEVVEKEYHSERGLLDFIEYL 246 Query: 230 NKNKTPIHPNIFYFSTEKDGIGV----EVALQWNDGFQENIYCFTNNIPQRDGGTHLAGF 285 N++KT +H F E++ G+ EV +Q+ D E I + NNIP + GTH +GF Sbjct: 247 NESKTALHTPPILFEGEREVNGISMYSEVCVQFTDSTTEYIASYVNNIPTTESGTHESGF 306 Query: 286 RAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEV 345 +A MTR + K K+ GDD REG+ A+V +K+ +P F QTK KL ++E Sbjct: 307 KAGMTRAFKEWTKKLNLLKEKDKEFEGDDLREGMTAIVRIKITNPIFEGQTKTKLGNTEA 366 Query: 346 KSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPG 405 + + +E++ +N A ++ IDAA RE ++ E ++K A L G Sbjct: 367 YTMMNDLAYTKFSEWIEDNKDTASSIINNAIDAAARREKIKKINEAEKKKIGKGTAPLAG 426 Query: 406 KLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQ 465 K+A C +DP+ SE +VEGDSAGGSAKQ R+R+ Q I+P KGKI+N EK + + +L S+ Sbjct: 427 KIAVCTLKDPSFSEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQKLENVLGSE 486 Query: 466 EVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERG 525 E+ TA+G G+ ++ D L+Y+ IIIM+DADVDG HIRTL +T+ YR M +I+ G Sbjct: 487 ELKIFNTAIGTGVLQNYKEQD-LKYNKIIIMSDADVDGYHIRTLWMTYIYRYMRQIISNG 545 Query: 526 HVYIAQPPLYKVKKGKQEQ----YIKDDEAMDQYQISIALDGATLHTNASAPALAGEALE 581 H+YIA PPLYKV K + + Y DE +++ + + GA + + + L Sbjct: 546 HLYIALPPLYKVYKQNKNKEIVRYAYSDEELEKEKKQVG-KGALIQRYKGLGEMNPDQL- 603 Query: 582 KLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELND 639 + +N R + +++ + + D + + ND Sbjct: 604 --------WETTLNPETRTLQQITIEDAAKAEKMVSLLMGDVVAPRKNYMYKYAVFND 653 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 44/146 (30%), Positives = 77/146 (52%), Gaps = 3/146 (2%) Query: 655 AEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQ 714 + + I+ + VD + Y R L L + + + + Sbjct: 505 EQDLKYNKIIIMSDADVDGYHIRTLWMTYIYRYMRQIISNGHLYIALPPLYKVYKQNKNK 564 Query: 715 PV---ASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI 771 + A ++ L+ K+ +G IQRYKGLGEMNP+QLWETT++PE+R + ++T++DA Sbjct: 565 EIVRYAYSDEELEKEKKQVGKGALIQRYKGLGEMNPDQLWETTLNPETRTLQQITIEDAA 624 Query: 772 AADQLFTTLMGDAVEPRRAFIEENAL 797 A+++ + LMGD V PR+ ++ + A+ Sbjct: 625 KAEKMVSLLMGDVVAPRKNYMYKYAV 650 >UniRef50_A0Q197 DNA topoisomerase IV subunit B n=34 Tax=Clostridium RepID=A0Q197_CLONN Length = 652 Score = 601 bits (1550), Expect = e-170, Method: Composition-based stats. Identities = 246/648 (37%), Positives = 376/648 (58%), Gaps = 34/648 (5%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 NSYD + + L+ L+ VR RPGMYIG T GLHH ++E++DN+IDE G+ ++++ Sbjct: 9 KNSYDVTDLTSLEKLEPVRVRPGMYIGSTGT-KGLHHCIWEILDNSIDEIANGYGNKVVL 67 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 ++ D SV++ D+GRGIPTGIHP + S E++ T LH GGKF++ +YK SGGLHGVG + Sbjct: 68 ILNKDKSVTIMDNGRGIPTGIHPVKKKSGVEMVFTELHTGGKFNNKNYKTSGGLHGVGAA 127 Query: 122 VVNALSQKLELVIQREGKIHRQIYEH-----------GVPQAPLAVTGETEKTGTMVRFW 170 VVNALS+ LE+ + ++G IH+Q +E+ G P PL + G+TE+TGT + F Sbjct: 128 VVNALSEWLEVEVYQKGHIHKQRFEYAEDKSLNKKMPGTPIFPLKIVGDTERTGTKITFK 187 Query: 171 PSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK--EDHFHYEGGIKAFVEY 228 P E F+ TEF++E++ +RL+EL+F N G+++ ++D+R + E +H E G+ F++Y Sbjct: 188 PDKEVFS-TTEFKFEVIDERLQELAFQNKGITLVIKDERKEEVIEKEYHSERGLLDFIDY 246 Query: 229 LNKNKTPIHPNIFYFSTEKD----GIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAG 284 LN++K PIH + + EK+ + EV +Q+ D ENI + NNIP + GTH G Sbjct: 247 LNESKIPIHKDPLLYEGEKEVNSIKVYCEVCMQFTDSSTENIASYVNNIPTTESGTHETG 306 Query: 285 FRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSE 344 F+ MTR + K K+ GDD REG+ A++ VK+ +P F QTK KL ++E Sbjct: 307 FKTGMTRAFKEWAKKLNIVKEKDKGFEGDDLREGMTAILRVKISNPIFEGQTKTKLGNNE 366 Query: 345 VKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLP 404 + + + + E++ +N A ++ + AA RE ++ + ++K A L Sbjct: 367 AYTVMNELAYIKIGEWIEDNKEIATQIINNAVSAAARREKIKKINDAEKKKVGKGTAPLA 426 Query: 405 GKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 464 GK++ C + P E +VEGDSAGGSAKQ R+R+ Q I+P KGKI+N EK R + +L+S Sbjct: 427 GKVSICTLKRPEFCEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQRLENVLAS 486 Query: 465 QEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVER 524 +E+ A+G G+ + YN D L+Y III++DADVDG HIRTL +T+ YR M ++ Sbjct: 487 EELKLFNAAIGTGV-LENYNEDDLKYDKIIILSDADVDGYHIRTLWITYIYRYMRSLITN 545 Query: 525 GHVYIAQPPLYKV----KKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEAL 580 GH+YIA PPLYKV KKG+ +Y DE + + I GA + + + L Sbjct: 546 GHLYIALPPLYKVYKNSKKGEISRYAYSDEELASAKKEIG-KGALIQRYKGLGEMNPDQL 604 Query: 581 EKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTR 628 +N R + +++ + + D R Sbjct: 605 ---------WDTTLNPETRTLQQITIEDAAKAEKMISLLMGDVVEPRR 643 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 52/177 (29%), Positives = 84/177 (47%), Gaps = 3/177 (1%) Query: 623 EQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFI 682 R N L SE + N + ++ I+ + VD + Sbjct: 474 NTEKQRLENVLASEELKLFNAAIGTGVLENYNEDDLKYDKIIILSDADVDGYHIRTLWIT 533 Query: 683 TGGEYRRICTLGEKLRGLLEEDAFIERGERRQPV---ASFEQALDWLVKESRRGLSIQRY 739 Y R L L + + ++ + A ++ L KE +G IQRY Sbjct: 534 YIYRYMRSLITNGHLYIALPPLYKVYKNSKKGEISRYAYSDEELASAKKEIGKGALIQRY 593 Query: 740 KGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENA 796 KGLGEMNP+QLW+TT++PE+R + ++T++DA A+++ + LMGD VEPRR ++ + A Sbjct: 594 KGLGEMNPDQLWDTTLNPETRTLQQITIEDAAKAEKMISLLMGDVVEPRRNYMYKYA 650 >UniRef50_Q83G36 DNA gyrase subunit B-like protein n=2 Tax=Tropheryma whipplei RepID=Q83G36_TROWT Length = 662 Score = 600 bits (1548), Expect = e-170, Method: Composition-based stats. Identities = 237/632 (37%), Positives = 350/632 (55%), Gaps = 32/632 (5%) Query: 1 MSNS--YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKE 58 MS++ Y++ I +L+GL AVRKRPGMYIG TD+ GL H ++E++DN++DE LAG Sbjct: 1 MSSNTDYNADDIALLEGLAAVRKRPGMYIGSTDNH-GLAHCLWEIIDNSVDEVLAGFGNV 59 Query: 59 IIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 118 + +T+H DNS SVQD GRGIP I + G++ E++ T LHAGGKF +Y SGGLHGV Sbjct: 60 VNITLHGDNSFSVQDFGRGIPVDIESKTGLTGVELVFTKLHAGGKFGTGAYFTSGGLHGV 119 Query: 119 GVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGE--TEKTGTMVRFWPSLETF 176 G SVVNALS+KL + + R+G + + L + + TGT VRFWP F Sbjct: 120 GASVVNALSEKLSVEVDRDGMTWVMEF-RNQVTSGLRSKCKIASNVTGTRVRFWPDPLIF 178 Query: 177 TNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNK--- 233 + E E L +R + +FL G+ + + D+ GK + +EGG K FVE+L+ + Sbjct: 179 GS-AEICIESLHQRAMQTAFLVPGLRVNIEDRVLGKSSSYLFEGGCKQFVEHLSAGELIT 237 Query: 234 --------------TPIHPNI--FYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRD 277 P+ S+ + V++AL W + F+ +I F N I Sbjct: 238 DVLCIRGKGSFSEAVPVLKETGNLVISSVERVCDVDIALAWRNDFETHINSFVNVIETPK 297 Query: 278 GGTHLAGFRAAMTRTL-NAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQT 336 GGTH +GF A+ +T+ NA + Y K +D GL AVVSVK+P+P+F QT Sbjct: 298 GGTHYSGFEQALLKTIRNAVSSQSRYLKSGNNRPEREDVFSGLTAVVSVKLPEPQFEGQT 357 Query: 337 KDKLVSSEVKSAVEQQMNELLAEYLLEN--PTDAKIVVGKIIDAARAREAARRAREMTRR 394 K+ L + VK V + + L + + T + V+ K++ R AAR +RE RR Sbjct: 358 KEVLGTPAVKGIVANIVADNLQKLFEDPKYKTQIRRVLEKVVAQMHFRLAARASRETQRR 417 Query: 395 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 454 K AL+ + LP KL DC+ D SEL++VEGDSA G+A++ RN + QA+LP++GKILNV+ Sbjct: 418 KNALETSSLPAKLVDCRSNDVNESELFIVEGDSALGTARRARNSEYQALLPIRGKILNVQ 477 Query: 455 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFF 514 KA L++ E A++I +G G G + ++ + RY +IIM+DADVDG+HIR LLLT F Sbjct: 478 KASVADALANAECASIIQVIGAGSGSN-FDIAQARYGKVIIMSDADVDGAHIRILLLTLF 536 Query: 515 YRQMPEIVERGHVYIAQPPLYK--VKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASA 572 +R M ++ G V+ A PPL++ VK ++ Y + D ++ + +G Sbjct: 537 FRYMQPMISSGRVFSALPPLHQVVVKNSNEKIYTRSDRELEMVLSRLKQEGLEHREPIQR 596 Query: 573 PALAGEALEKLVSEYNATQKMINRMERRYPKA 604 GE ++E + + R A Sbjct: 597 YKGLGEMDADQLAETTMDRSKRTLLRIRMSDA 628 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 39/105 (37%), Positives = 54/105 (51%), Gaps = 4/105 (3%) Query: 703 EDAFIERGERRQPVASFEQALDWLVKESRRGLS----IQRYKGLGEMNPEQLWETTMDPE 758 ++ + S + L + + GL IQRYKGLGEM+ +QL ETTMD Sbjct: 557 HQVVVKNSNEKIYTRSDRELEMVLSRLKQEGLEHREPIQRYKGLGEMDADQLAETTMDRS 616 Query: 759 SRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANID 803 R +LR+ + DA A +F LMG+ V PRR FI + + ID Sbjct: 617 KRTLLRIRMSDAQQASDIFALLMGNDVAPRREFIANSVVSTDRID 661 >UniRef50_Q59526 DNA topoisomerase 4 subunit B n=9 Tax=Bacteria RepID=PARE_MYCGA Length = 633 Score = 595 bits (1534), Expect = e-168, Method: Composition-based stats. Identities = 262/646 (40%), Positives = 382/646 (59%), Gaps = 29/646 (4%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 M ++Y+ IKVLKGL+ VRKRPGMYIG TD GLHH+V+E+ DNA+DEAL G +I Sbjct: 1 MVSNYNEKHIKVLKGLEPVRKRPGMYIGSTDT-RGLHHLVWELFDNAVDEALNGSANKIE 59 Query: 61 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 V D S+ V D+GRGIP G + +S + + TVLHAGGKFDD +YKVSGGLHGVG Sbjct: 60 VVHKKDGSIIVTDNGRGIPVGKNLATNLSTVDTVYTVLHAGGKFDDQAYKVSGGLHGVGA 119 Query: 121 SVVNALSQKLELVIQREGKIHRQIYEH-GVPQAPLAVTGETEKTGTMVRFWPSLETFTNV 179 SVVNALS+KL + + R+G ++ IY+ G PL G + K GT+V+FWP F N+ Sbjct: 120 SVVNALSRKLIVTVHRDGGMYESIYQDGGKIIQPLKKVGNSTKHGTIVQFWPDPTIFKNI 179 Query: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK-EDHFHYEGGIKAFVEYLNKNKTPIHP 238 +F ++ +RL E SFL G+ I D+ + + F + GI +++Y+N+NK I Sbjct: 180 -QFNPYMIKERLHESSFLFKGLKIVFVDENNPELSQTFIAKDGILEYLKYVNENKKSI-S 237 Query: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 I F + + I V+ Q+ D E I F N++ +GG+H GF+ AM T+N Y Sbjct: 238 KIIPFKGDYEKIVVDGCFQYTDNESELIISFANSVKTSEGGSHENGFKQAMLETINDYSK 297 Query: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDP--KFSSQTKDKLVSSEVKSAVEQQMNEL 356 K D +EGL V+SV+VP+ + QTK+KL + EVK AV + + + Sbjct: 298 KYKLINNKDKGFDWSDLKEGLSVVLSVQVPEKIIAYEGQTKNKLFTQEVKVAVAKILTQQ 357 Query: 357 LAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRR-KGALDLAGLPGKLADCQERDP 415 L +L EN DAK ++ + A+EAA++A+E T++ K A L GKL Q+++P Sbjct: 358 LFYFLEENQADAKQLIERFKLIKEAKEAAKKAKENTKKLKSAKSERVLYGKLTPAQQKNP 417 Query: 416 ALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALG 475 +E++LVEGDSAGG+AK GR+++ QAILPL+GK++NVEK+R +L ++E+ ++I+ LG Sbjct: 418 LQNEIFLVEGDSAGGTAKSGRDKRFQAILPLRGKVVNVEKSRLQDLLKNEEILSIISCLG 477 Query: 476 CGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLY 535 CGIG + +N L+YH IIIMTDAD DG+HI+ LLLTFFYR M E++E+G VYIA PLY Sbjct: 478 CGIGNN-FNIKNLKYHKIIIMTDADTDGAHIQVLLLTFFYRYMKELIEQGKVYIALAPLY 536 Query: 536 KV--KKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKM 593 K+ K + + DD +D+ + + K + E N+ Q Sbjct: 537 KISAKNSNKSAFAWDDYQLDELRTKYGSYEVQRY--------------KGLGEMNSEQLW 582 Query: 594 INRME---RRYPKAMLKELIYQPTLTEADLSDEQTVTR-WVNALVS 635 M+ R+ + ++ + D+ ++ + W+N V Sbjct: 583 TTTMDPSKRQLIQVSIQNAAQAERKVSILMGDDASIRKNWINENVD 628 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 42/146 (28%), Positives = 71/146 (48%), Gaps = 6/146 (4%) Query: 653 TNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIE---R 709 N + + I+ + D + + YR + L E+ + + + + Sbjct: 484 FNIKNLKYHKIIIMTDADTDGAHI--QVLLLTFFYRYMKELIEQGKVYIALAPLYKISAK 541 Query: 710 GERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKD 769 + A + LD L + +QRYKGLGEMN EQLW TTMDP R++++V++++ Sbjct: 542 NSNKSAFAWDDYQLDELRTKYGS-YEVQRYKGLGEMNSEQLWTTTMDPSKRQLIQVSIQN 600 Query: 770 AIAADQLFTTLMGDAVEPRRAFIEEN 795 A A++ + LMGD R+ +I EN Sbjct: 601 AAQAERKVSILMGDDASIRKNWINEN 626 >UniRef50_B3LD45 DNA gyrase subunit b, putative n=1 Tax=Plasmodium knowlesi strain H RepID=B3LD45_PLAKH Length = 992 Score = 593 bits (1530), Expect = e-168, Method: Composition-based stats. Identities = 275/947 (29%), Positives = 411/947 (43%), Gaps = 218/947 (23%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 YD+ I +L+GL+AVRKRPGMYIG+TD GLH ++FE++DN++DE C EI + Sbjct: 108 CKDYDAKDIVILEGLEAVRKRPGMYIGNTD-VKGLHQILFEIIDNSVDEYNNFECNEIKI 166 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDN------SYKVSGG- 114 IH D SV+++D+GRGIP IH + SA E ++TVLH+G KF D + S G Sbjct: 167 VIHEDESVTIEDNGRGIPCDIHEKTKKSALETVLTVLHSGAKFVDEDTAADLVERTSVGG 226 Query: 115 ---------LHGVG-----VSVVNALSQK------------------------------- 129 G G VV L +K Sbjct: 227 MSSEIGEDERGGKGEQKSKAKVVEKLDEKNSKKKNPKEASQKSASQMYRFSSGLHGVGLS 286 Query: 130 --------LELVIQREGKIHRQIYEHGVPQAPLAVT-GETEKTGTMVRFWPSLETFTNVT 180 +++ + R GKIH E G PL+V K GT + + P + F N Sbjct: 287 VANALSSFMKVKVFRGGKIHSIELEKGKVVTPLSVRECPVSKRGTQIHYKPDHDIFKNTI 346 Query: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--------------------------- 213 E++ R+ +L++LN ++ D+R K+ Sbjct: 347 RHNAELIKNRIHQLAYLNDRLTFYFYDERSAKKVPTSVHLAKGNEADEVDKREDKTTDAV 406 Query: 214 --------------DHFHYEGGIKAFVEYLNKNKTPIHPN---IFYFSTEKDGIGVEVAL 256 + +EGG+ ++E L KNK + + I S + + +++ + Sbjct: 407 NTTVEHNNLDFYPYEVIKHEGGLNEYMESLTKNKASLFKDSNKIISISCHQKNVHIDLRI 466 Query: 257 QWNDG-FQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDA 315 +W G + E+I F NN+ DGGTH+ + A++R +N + K+ + K V+ G+ Sbjct: 467 KWTQGQYHEHIVSFVNNVNTTDGGTHVDAMKYAISRCVN-FNIKKNEATKNFVNIPGEYI 525 Query: 316 REGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKI 375 REG+ A++S+K+ +P+F QTK KL S +K +E + E L+E P + K Sbjct: 526 REGMTAILSIKMNNPEFEGQTKTKLGSHFLKPILESAIFEKLSEIFDFEPNLLNTIYLKA 585 Query: 376 IDAARAREAARRAREMTRRKGALDLAG-LPGKLADCQERDPALSELYLVEGDSAGGSAKQ 434 + A + E A+ AR++ R K + LPGKL DC D +E+++VEGDSA GSAKQ Sbjct: 586 LQAKASDEEAKAARDLIRSKNNQYYSTILPGKLVDCISDDINRNEIFIVEGDSAAGSAKQ 645 Query: 435 GRNRKNQAILPLKGKILNVEK-ARFDKMLSSQEVATLITALGCGIGRDEYNPDK------ 487 RNR+ QAILPLKGKILNVEK ++ + E+ +LITA+G I D K Sbjct: 646 ARNREIQAILPLKGKILNVEKIKNNKRIFENSELKSLITAIGLSISCDNSKMAKGKNMLN 705 Query: 488 --------------------------------------LRYHSIIIMTDADVDGSHIRTL 509 LRY IIIMTDADVDG HIR L Sbjct: 706 NKKKDIKKKYDLKCSKKENVQVNNAMVNKKKNTLFDTPLRYGKIIIMTDADVDGEHIRIL 765 Query: 510 LLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTN 569 LLTF YR I++ G+V++A PPLYKV + + M Q+ +S +HT Sbjct: 766 LLTFLYRFQKNIIQNGNVFVACPPLYKVTYNRFFDNTIKETVMKQFNVSTRNSKTLIHTY 825 Query: 570 ASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRW 629 + + L L+ + + E+R + L + + D T Sbjct: 826 SD------DELNVLLGLLEKDRS--SHAEQRSVELGKGGLARRGNIPSEDHLSSLTSLDN 877 Query: 630 VNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRR 689 +N + + R + + ++G + Sbjct: 878 LNFRYN----------------SADEVTEKERLNTDDRNAAHTANTAISTAPLSGNAFFT 921 Query: 690 ICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQ 749 E IQR+KGLGEM +Q Sbjct: 922 FSKRYE----------------------------------------IQRFKGLGEMMADQ 941 Query: 750 LWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENA 796 LW TTMDP R+++RVTV DA+ A+ L +LMG+ + R++FI EN+ Sbjct: 942 LWSTTMDPSVRKLIRVTVNDAMRANNLIFSLMGEDSKLRKSFILENS 988 >UniRef50_P78016 DNA topoisomerase 4 subunit B n=3 Tax=Mycoplasma RepID=PARE_MYCPN Length = 635 Score = 591 bits (1525), Expect = e-167, Method: Composition-based stats. Identities = 245/645 (37%), Positives = 381/645 (59%), Gaps = 25/645 (3%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 M N+Y ++IK+LKGLDAV+KRPGMYIG TD G HH+++E++DN +DE L+G I Sbjct: 1 MKNNYSEANIKILKGLDAVKKRPGMYIGSTD-SRGFHHLLWEILDNCVDEVLSGFANTIA 59 Query: 61 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 V +HA+N ++V D+GRGIP H + +S + + T LHAGGKFD++SYK++GGLHGVG Sbjct: 60 VVLHAENQITVSDNGRGIPFETHSDSKISTIDTVFTYLHAGGKFDNDSYKIAGGLHGVGA 119 Query: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAV---TGETEKTGTMVRFWPSLETFT 177 SVVNALS +L++ ++R+GK++R +YE+G A + ++ GT V F P + F Sbjct: 120 SVVNALSDQLQVTVKRQGKVYRSVYENGGKIKQKAHCIGNAKIDEHGTSVTFRPDPKVFK 179 Query: 178 NVTEFEYEILAKRLRELSFLNSGVSIRLRDKR-DGKEDHFHYEGGIKAFVEYLNKNKTPI 236 + F+ E++ RL+EL+FL + + D+ G+++ F E GI +++ LN + I Sbjct: 180 KI-HFDSELIRARLKELAFLFKKLQLTFVDETGSGEKEVFFTEAGISQYLDELNADSKQI 238 Query: 237 HPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAY 296 IF S +D I +E Q+ DG E + F N+I +GG+H A FR ++ +N Y Sbjct: 239 AQKIF-VSGTEDDIELEAVFQFIDGEDEKLLSFANSIRTSEGGSHEASFRQSVGDVINNY 297 Query: 297 MDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDP--KFSSQTKDKLVSSEVKSAVEQQMN 354 K + K+ + + REGL ++ V +P+ F QTK KL S EVK+ V++ Sbjct: 298 CRKYNFLKERDKNFEASEIREGLNGIIKVNLPEKIIAFEGQTKSKLFSKEVKAVVQKLTQ 357 Query: 355 ELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRR-KGALDLAGLPGKLADCQER 413 + ++L N DAK++V K+ + R+ ++ R++ + L GKLA Q + Sbjct: 358 KHFFQFLERNSVDAKLIVEKLFYNRKLRQELKQQRQIKKNLSNPKAERILFGKLAPAQSK 417 Query: 414 DPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK-MLSSQEVATLIT 472 A EL++VEGDSAGG+AK GR+R QAILPL+GK+LNVEK K ++++E+ TLI Sbjct: 418 KVAERELFVVEGDSAGGTAKMGRDRFLQAILPLRGKVLNVEKINNKKEAINNEELLTLIF 477 Query: 473 ALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQP 532 +G GIG + + +Y IIIMTDAD DG+HI+ LLLTFFYR M ++E+GH+Y+A P Sbjct: 478 CIGTGIGNN-FTIRDRKYDKIIIMTDADNDGAHIQILLLTFFYRYMKPLIEKGHIYLALP 536 Query: 533 PLYKVK-KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQ 591 PLYK + + K+ +Y+ ++ ++QY+ + H N GE ++ + Sbjct: 537 PLYKFEGRDKKARYLWTEQELEQYRAKHS------HFNVQRYKGLGE-----MNADQLWE 585 Query: 592 KMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTR-WVNALVS 635 +N M R+ + L I + D+ + + W+ A ++ Sbjct: 586 TTMNPMTRKLIQVKLDNFIQAEKQINVFMGDKTELRKSWIEANIN 630 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 38/143 (26%), Positives = 66/143 (46%), Gaps = 1/143 (0%) Query: 653 TNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGER 712 ++ I+ + D + Y + + L E ++ Sbjct: 487 FTIRDRKYDKIIIMTDADNDGAHIQILLLTFFYRYMKPLIEKGHIYLALPPLYKFEGRDK 546 Query: 713 RQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIA 772 + EQ L+ + ++QRYKGLGEMN +QLWETTM+P +R++++V + + I Sbjct: 547 KARYLWTEQELEQYRAK-HSHFNVQRYKGLGEMNADQLWETTMNPMTRKLIQVKLDNFIQ 605 Query: 773 ADQLFTTLMGDAVEPRRAFIEEN 795 A++ MGD E R+++IE N Sbjct: 606 AEKQINVFMGDKTELRKSWIEAN 628 >UniRef50_A8LVU4 DNA gyrase subunit B domain protein n=37 Tax=Actinomycetales RepID=A8LVU4_SALAI Length = 730 Score = 591 bits (1523), Expect = e-167, Method: Composition-based stats. Identities = 255/684 (37%), Positives = 375/684 (54%), Gaps = 51/684 (7%) Query: 5 YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIH 64 Y++ + L+GLDAVRKRPGMYIG TD G+ H+V E++DN+ DE +AGH I VT+H Sbjct: 54 YEADDLTHLEGLDAVRKRPGMYIGSTD-SRGVGHLVNEILDNSTDEGVAGHATSIEVTLH 112 Query: 65 ADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN 124 AD SV V DDGRGIPT +H + G+S E+++T LHAGGKF + YK SGGLHGVG S VN Sbjct: 113 ADGSVQVDDDGRGIPTDVHAKSGISGVELVLTRLHAGGKFGGSGYKTSGGLHGVGASAVN 172 Query: 125 ALSQKLELVIQREGKIHRQIYEHGV--------PQAP------LAVTGETE---KTGTMV 167 ALS++ ++ ++R GKIH + HGV P+AP L V G + +TGT + Sbjct: 173 ALSRRFDVTVRRGGKIHTMSFRHGVPGTFDGDGPEAPFRAGPGLQVIGAVKRRQRTGTSI 232 Query: 168 RFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKR--DGKEDHFHYEGGIKAF 225 R+W F + E + +LR +FL GVS LRD + E+ FHY G+ Sbjct: 233 RYWYDPRYFEVGATLDAEAVRMKLRNTAFLVPGVSYLLRDHTGAEPVEERFHYPNGLTDM 292 Query: 226 VEYLNKNKTPIHPNIFYFSTEKD------------------GIGVEVALQWNDGFQENIY 267 V++L I S E VE+A +W G++ + Sbjct: 293 VDFLAPAGDRPVSGILVVSGEGTYRENAADANGVMQANVPRRAEVELAFRWGTGYERTVE 352 Query: 268 CFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDK-EGYSKKAKVSATGDDAREGLIAVVSVK 326 CFTN I GGTH GF A+TRTL + G K + T DD EG+ AVV V+ Sbjct: 353 CFTNTIRNAHGGTHRKGFERALTRTLADAVRNARGLLKAKEDPPTLDDILEGMTAVVHVR 412 Query: 327 VPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPT--DAKIVVGKIIDAARAREA 384 +P+P+F+SQTKD+L ++ + +++ + + L +L E T +A+ V+ KI DAAR R Sbjct: 413 IPEPQFTSQTKDELSTAGITKVLQRLVEQHLKVWLEERRTKAEARTVLQKIADAARVRLT 472 Query: 385 ARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAIL 444 ++ ++ RRK AL+ A +P KL DC+ A SE+++VEGDSA G+A+ R+ + QA+L Sbjct: 473 QKQQKDAARRKTALEGASMPAKLVDCRSTGVARSEMFIVEGDSALGTARLARSSEYQALL 532 Query: 445 PLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGS 504 P++GKILNV+KA ++L + E A ++ LG G GR ++ +RY ++IM DADVDG+ Sbjct: 533 PIRGKILNVQKANLQQVLDNAECAAIVQVLGAGSGR-TFDLSAVRYGRVLIMADADVDGA 591 Query: 505 HIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK---KGKQEQYIKDDEAMDQYQISIAL 561 HIRTLL+T F R M ++E G +Y A PPL+K+ + Q Y E M+ + Sbjct: 592 HIRTLLITLFARYMRPLIEAGRLYAAMPPLHKITTRGRNPQTVYTYTQEEMEATVRRLEK 651 Query: 562 DGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLS 621 G + T GE ++ + +N R + L++ + E + Sbjct: 652 AGKQIVTPIPRFKGLGE-----MNADELWETTMNPAGRAVRRITLEDAEAAEQVLELLMG 706 Query: 622 DEQTVTR-WVNALVSELNDKEQHG 644 ++ R W+ A ++ + Sbjct: 707 EKVEPRRNWLIASADRVDREAIDA 730 Score = 115 bits (289), Expect = 6e-24, Method: Composition-based stats. Identities = 46/156 (29%), Positives = 76/156 (48%), Gaps = 7/156 (4%) Query: 652 HTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIE-RG 710 + + ++ + VD + Y R +L + I RG Sbjct: 569 TFDLSAVRYGRVLIMADADVDGAHIRTLLITLFARYMRPLIEAGRLYAAMPPLHKITTRG 628 Query: 711 ERRQPVASFEQA-----LDWLVKESRRGLS-IQRYKGLGEMNPEQLWETTMDPESRRMLR 764 Q V ++ Q + L K ++ ++ I R+KGLGEMN ++LWETTM+P R + R Sbjct: 629 RNPQTVYTYTQEEMEATVRRLEKAGKQIVTPIPRFKGLGEMNADELWETTMNPAGRAVRR 688 Query: 765 VTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAA 800 +T++DA AA+Q+ LMG+ VEPRR ++ +A + Sbjct: 689 ITLEDAEAAEQVLELLMGEKVEPRRNWLIASADRVD 724 >UniRef50_A1SCM1 DNA gyrase subunit B n=28 Tax=Actinomycetales RepID=A1SCM1_NOCSJ Length = 711 Score = 587 bits (1513), Expect = e-166, Method: Composition-based stats. Identities = 285/675 (42%), Positives = 408/675 (60%), Gaps = 59/675 (8%) Query: 4 SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTI 63 YD+S+I+VL+GL+AVRKRPGMYIG T + GLHH+++E+VDNA+DEALAG+C I++T+ Sbjct: 31 DYDASAIQVLEGLEAVRKRPGMYIGSTGE-RGLHHLIWEIVDNAVDEALAGYCDRIVLTL 89 Query: 64 HADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVV 123 AD + V+D+GRGIPTG P + + A + +TVLHAGGKF YKVSGGLHGVGVSVV Sbjct: 90 LADGGIRVEDNGRGIPTGTAPGQELPALTLALTVLHAGGKFGGGGYKVSGGLHGVGVSVV 149 Query: 124 NALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK---TGTMVRFWPSLETFTNVT 180 NALS +L ++ G + RQ + GVP L E TGT + +W S + F T Sbjct: 150 NALSTRLVAEVKNRGHLWRQSFSAGVPDGELEQVRPVEPDEGTGTTITYWASPDIFETTT 209 Query: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGK---------------------------- 212 E + R+RE +FLN G+ I +RD+R Sbjct: 210 H-SLETITSRIREYAFLNKGLEIVVRDERPAAAEIVDAVEDDTVDPDHRGGIDDAGHDAI 268 Query: 213 --------EDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTE-----KDGIGVEVALQWN 259 E F Y+ G+ +VE+LN+ KT +P + F E ++ + +EVA+QWN Sbjct: 269 KRGEGGALEQIFKYDRGLIDYVEHLNRRKTAANPTVIAFEAETPESVENHMSLEVAMQWN 328 Query: 260 DGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGL 319 F E+++ F N I +GGTH GFRAA+T +N + + G KK + +GDD REGL Sbjct: 329 TSFSESVHTFANTINTHEGGTHEEGFRAALTSLVNNWGFEWGLMKKPEDRVSGDDIREGL 388 Query: 320 IAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAA 379 A++S+K+ +P+F QTK KL ++E K V++ +N+ L +L +NP + + +V K AA Sbjct: 389 TAIISIKLGEPQFEGQTKTKLGNTEAKGFVQRLVNDQLGAWLEQNPAEGRDIVRKAQAAA 448 Query: 380 RAREAARRAREMTR-RKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNR 438 AR AAR+AR++ R RKG L GLPGKL+DCQ +PA E+++VEGDSAGGSA+QGR+ Sbjct: 449 SARIAARKARDLARSRKGLLGGGGLPGKLSDCQSTNPAECEVFIVEGDSAGGSARQGRDP 508 Query: 439 KNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTD 498 + QAILP++GKILNVEKAR DK+LS+QEV ++I+ALG GI +DE++ +KLRYH +++M D Sbjct: 509 RIQAILPIRGKILNVEKARIDKVLSNQEVQSIISALGTGI-QDEFDIEKLRYHKVVLMAD 567 Query: 499 ADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGK--QEQYIKDDEAMDQYQ 556 ADVDG HI TLLLT +R M ++E G+VY+AQPPLY+++ K + +++ D D Sbjct: 568 ADVDGHHINTLLLTLLFRFMKPLIEGGYVYMAQPPLYRLRWNKPHEHEFVYSDAERDALL 627 Query: 557 ISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME---RRYPKAMLKELIYQP 613 + G L G + E NA + M+ R + L + + Sbjct: 628 RAGQEAGKKLPKENPVQRYKG------LGEMNAKELWETTMDPEQRLMLQVTLDDAAHAD 681 Query: 614 TLTEADLSDEQTVTR 628 + + ++ R Sbjct: 682 EIFSILMGEDVEQRR 696 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 53/192 (27%), Positives = 84/192 (43%), Gaps = 12/192 (6%) Query: 623 EQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFI 682 R L ++ + E+ + +V + VD + + + Sbjct: 522 NVEKARIDKVLSNQEVQSIISALGTGIQDEFDIEKLRYHKVVLMADADVDGHHI--NTLL 579 Query: 683 TGGEYRRICTLGEKLRGLLEEDAFIE---RGERRQPVASFEQALDWLVKESR-------R 732 +R + L E + + + D L++ + + Sbjct: 580 LTLLFRFMKPLIEGGYVYMAQPPLYRLRWNKPHEHEFVYSDAERDALLRAGQEAGKKLPK 639 Query: 733 GLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFI 792 +QRYKGLGEMN ++LWETTMDPE R ML+VT+ DA AD++F+ LMG+ VE RR+FI Sbjct: 640 ENPVQRYKGLGEMNAKELWETTMDPEQRLMLQVTLDDAAHADEIFSILMGEDVEQRRSFI 699 Query: 793 EENALKAANIDI 804 + NA +DI Sbjct: 700 QRNAKDVRFLDI 711 >UniRef50_A0LUT9 DNA topoisomerase (ATP-hydrolyzing) n=15 Tax=Actinobacteria (class) RepID=A0LUT9_ACIC1 Length = 703 Score = 584 bits (1505), Expect = e-165, Method: Composition-based stats. Identities = 238/643 (37%), Positives = 348/643 (54%), Gaps = 50/643 (7%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 +++Y + + VL+GL+AVRKRPGMYIG TD GL H V+E++DNA+DEALAG+ I V Sbjct: 25 TDAYTARHLLVLEGLEAVRKRPGMYIGSTD-SRGLMHCVWELLDNAVDEALAGYGDAIDV 83 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 ++AD SV V+D GRGIP + P+ G++ EV+ T LHAGGKF +Y SGGLHGVG S Sbjct: 84 IVYADGSVEVRDTGRGIPVDVEPKTGLTGVEVVFTKLHAGGKFGGGAYGTSGGLHGVGAS 143 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGV--------PQAPLAVTG--------ETEKTGT 165 VVNAL+ +L++ + R+G + G P+AP G + TGT Sbjct: 144 VVNALAARLDVEVDRDGATWTMSFRRGRRGIFDGPGPKAPFRPGGGLAKARRLPRKVTGT 203 Query: 166 MVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAF 225 VRFWP + F + + L R R+ +FL G++I +RD+ + F + GG K F Sbjct: 204 RVRFWPDPQIFLRDARIDLDALIARARQTAFLVPGLAITIRDETTAYAETFRFSGGTKDF 263 Query: 226 VEYLNK--------------------NKTPIHPNIFYFSTEKDGIG---VEVALQWNDGF 262 +YL +T + S +D I V+VAL+W+ G+ Sbjct: 264 ADYLAAEAGAQTSVSGTLQLRGTGQFTETVPVLDDRGHSVPQDVIREMVVDVALRWDSGY 323 Query: 263 QENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAV 322 I F N + GG+H+ GF A+ + ++ K DD EGL AV Sbjct: 324 DTVIRSFVNVVATPKGGSHVTGFERAVVKVVSDAARSARLVK--DEPIVKDDVLEGLTAV 381 Query: 323 VSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYL----LENPTDAKIVVGKIIDA 378 VSV+ P+P+F QTK+ L + V ++ L + + ++ V+ K++ A Sbjct: 382 VSVRFPEPQFDGQTKEVLGTPAATRIVFDVVSRGLRAFFSSTRRVDRQASRAVLEKVVAA 441 Query: 379 ARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNR 438 AR R A R +E RRK AL+ A LP KLADC+ D + +EL++VEGDSA G+AK RN Sbjct: 442 ARTRRALRAHKEAQRRKNALESAALPAKLADCRSTDASRTELFIVEGDSALGTAKLARNS 501 Query: 439 KNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTD 498 + QA+LP++GKILNV+KA ML++ E A +I +G G GR ++ D +RY +IIMTD Sbjct: 502 EFQALLPIRGKILNVQKADLSDMLNNAECAAIIQVIGAGSGR-SFSLDAVRYGKVIIMTD 560 Query: 499 ADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKG--KQEQYIKDDEAMDQYQ 556 ADVDG+HIR LLLT F+R M +++ G ++ A PPL++++ K Y D + + Sbjct: 561 ADVDGAHIRCLLLTLFFRYMRPLLDAGRIFAAVPPLHRIEVSGRKDPVYTYSDAELHRLL 620 Query: 557 ISIALDGATLHTNASAPALAGEALEKLVS-EYNATQKMINRME 598 + G T L +L + +++ RM Sbjct: 621 ADLDRQGIRYKTPQRYKGLGEMDAAQLAETTMDPAHRVLRRMT 663 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 49/160 (30%), Positives = 74/160 (46%), Gaps = 7/160 (4%) Query: 652 HTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGE 711 + + + ++ + VD + Y R ++ + IE Sbjct: 544 SFSLDAVRYGKVIIMTDADVDGAHIRCLLLTLFFRYMRPLLDAGRIFAAVPPLHRIEVSG 603 Query: 712 RRQPVASFEQ-----ALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVT 766 R+ PV ++ L L ++ R + QRYKGLGEM+ QL ETTMDP R + R+T Sbjct: 604 RKDPVYTYSDAELHRLLADLDRQGIRYKTPQRYKGLGEMDAAQLAETTMDPAHRVLRRMT 663 Query: 767 VKDAIAADQLFTTLMGDAVEPRRAFIEENA--LKAANIDI 804 + DA AA+ F LMG V PR+ FI +A L + ID+ Sbjct: 664 LTDAAAAEAAFELLMGGDVVPRKEFIAASAATLDRSRIDV 703 >UniRef50_P94281 DNA gyrase subunit B n=211 Tax=cellular organisms RepID=GYRB_BARBK Length = 692 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 250/612 (40%), Positives = 362/612 (59%), Gaps = 20/612 (3%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 ++Y++SSI++L+GL+ VR RPGMYIG TD LHH+ E++DNA+DEA+AG+ I +T Sbjct: 51 STYNASSIRILEGLEPVRLRPGMYIGGTD-SKALHHLFSEIIDNAMDEAVAGYADLIDIT 109 Query: 63 IHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 + ++N ++V D+GRGIP HP+ S EVIMT LH+GGKFD +Y+ SGGLHGVG+S Sbjct: 110 LDSNNYLTVTDNGRGIPIENHPQIPDKSTLEVIMTHLHSGGKFDGKAYQTSGGLHGVGIS 169 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGET-EKTGTMVRFWPSLETFTNVT 180 VVNALS +E+ + RE K++RQ + G+PQ+ L G+ + GT V F P + F T Sbjct: 170 VVNALSDDMEVEVARERKLYRQRFSRGIPQSGLEELGDVYNRRGTRVCFHPDSQIFGENT 229 Query: 181 EFEYEILAKRLRELSFLNSGVSIRLRD--------KRDGKEDHFHYEGGIKAFVEYLNKN 232 F+ E + K R ++L +GV IR K ++D F++ G+K ++ KN Sbjct: 230 AFDPEKIYKIARSKAYLFNGVKIRWNCDPAALKDAKNIPEKDVFYFPDGLKDYLSLSLKN 289 Query: 233 KTPIHPNIFYFSTEK--DGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMT 290 K + IF T++ VE A+ W++G I + N IP +GGTH G R + Sbjct: 290 KHLVTAEIFSGKTQQLSGHGSVEWAIAWHNG-DAYIQSYCNTIPTEEGGTHETGLRQTLL 348 Query: 291 RTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVE 350 R L AY + K T DD + ++SV + DP+F QTKD+L ++E + VE Sbjct: 349 RGLKAYAE--LIGNKRASIITSDDVMASTVVMLSVFIKDPQFVGQTKDRLATTEAQRIVE 406 Query: 351 QQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADC 410 + + +L +P +A ++ +I+ A R R+ RE+ R+ L LPGKLADC Sbjct: 407 NAIRDPFDHWLANSPHEATKLLNWVIERAEERLKRRQDREINRKTAVRKLR-LPGKLADC 465 Query: 411 QERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATL 470 + A +EL++VEGDSAGGSAKQ RNR NQAILPL+GKILNV A +KM SSQ +A L Sbjct: 466 SQNSAAGAELFIVEGDSAGGSAKQARNRTNQAILPLRGKILNVASAAREKMSSSQTIADL 525 Query: 471 ITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIA 530 I ALGCG R +Y + LRY IIIMTDADVDG+HI +LL+TFF++++P+++ GH+Y+A Sbjct: 526 ILALGCGT-RSKYREEDLRYERIIIMTDADVDGAHIASLLITFFFQEIPDLIRAGHLYLA 584 Query: 531 QPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNAT 590 PPLY++ +G + Y +DD D+ + + GE + + E Sbjct: 585 VPPLYRISQGGKVAYARDDSHKDELLKTEFTGKGKIEI--GRFKGLGEMRAEQLKETTMN 642 Query: 591 QKMINRMERRYP 602 K + Sbjct: 643 PKKRTLLRVSID 654 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 44/156 (28%), Positives = 68/156 (43%), Gaps = 8/156 (5%) Query: 655 AEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAF--IERGER 712 E +E I+ + VD + + ++ I L L I +G + Sbjct: 539 EEDLRYERIIIMTDADVDGAHI--ASLLITFFFQEIPDLIRAGHLYLAVPPLYRISQGGK 596 Query: 713 RQPVASFEQALDWLVKE--SRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVK-- 768 + L E + + I R+KGLGEM EQL ETTM+P+ R +LRV++ Sbjct: 597 VAYARDDSHKDELLKTEFTGKGKIEIGRFKGLGEMRAEQLKETTMNPKKRTLLRVSIDTF 656 Query: 769 DAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 + + LMG E R FI+E++ A N+DI Sbjct: 657 EMQETKETVQNLMGTKPEERFRFIQESSTFANNLDI 692 >UniRef50_Q98RQ4 DNA gyrase subunit B n=13 Tax=cellular organisms RepID=Q98RQ4_GUITH Length = 684 Score = 573 bits (1478), Expect = e-162, Method: Composition-based stats. Identities = 243/612 (39%), Positives = 372/612 (60%), Gaps = 14/612 (2%) Query: 10 IKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSV 69 I VL+GL+ VR+RPG++IG T G HH+V+E+VDN++DE++AG C+++ V I++D SV Sbjct: 49 ITVLEGLEPVRRRPGVFIGSTG-LKGFHHLVYEIVDNSVDESMAGFCEKVDVIINSDKSV 107 Query: 70 SVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQK 129 +++D+GRGIPT +HP +A E ++T+LHAGGKF YKVSGGLHGVGVSVVN LS+ Sbjct: 108 TIRDNGRGIPTDLHPITNKTALETVLTILHAGGKFGGGGYKVSGGLHGVGVSVVNGLSEY 167 Query: 130 LELVIQREGKIHRQIYEHG--VPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEIL 187 L + QR + + G + + ++ + GT + F P + F + +F+ ++ Sbjct: 168 LNINTQRNQRKIGMRFVRGKKISECNISSFKKNIINGTTINFKPDYQIFFSEFDFDSYVI 227 Query: 188 AKRLRELSFLNSGVSIRLRDKRDGKEDH--FHYEGGIKAFVEYLNKNKTPIHPNIFYFST 245 RL EL+FLNS + + L D+R F ++GGI ++ + NK +H N S Sbjct: 228 GGRLNELAFLNSNLKLLLEDRRSKIIKSSLFLHDGGIMEYINEMTINKKRLH-NPIILSK 286 Query: 246 EKDGIGVEVALQWN-DGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSK 304 + +E+ W+ + +QENI F NNI +GGTH+ GF+ +T+ +N K+ SK Sbjct: 287 IFNNSQIEIGFVWSSEQYQENILSFVNNIRTVEGGTHVDGFKQGITKLVNLLSKKKIKSK 346 Query: 305 KAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLEN 364 + S +G+ REGL +++VK +P+F Q K KL + ++K VE + E + +EN Sbjct: 347 EKLNSISGEFIREGLTCLINVKTSEPEFEGQIKSKLGNPDIKFLVENLIKEEGEIHFIEN 406 Query: 365 PTDA-KIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLV 423 ++ IV+ K I A A EA+++A+E+ R+K L+ LPGKL+DC E++P SE+++V Sbjct: 407 NSNLLNIVLEKAISAMNAYEASKKAKELVRKKSILEGITLPGKLSDCSEKNPQFSEIFIV 466 Query: 424 EGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEY 483 EGDSAGGSAKQ R+R+ QAILPL+GKI+N+EK K+ ++ E+ +LI+ALG G+ ++ Sbjct: 467 EGDSAGGSAKQARDRRFQAILPLRGKIINIEKNDEKKIYNNTEIQSLISALGLGVRGNDE 526 Query: 484 NPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK----- 538 + LRYH IIIMTDADVDG+HIRTLLLTFFYR E++++G VYIA PPLYK++ Sbjct: 527 DLSNLRYHKIIIMTDADVDGAHIRTLLLTFFYRYQKELIDKGFVYIACPPLYKIENKKNK 586 Query: 539 -KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRM 597 K QY + ++ S + + + + +S K I Sbjct: 587 NLDKNTQYCYSEGELEYIIQSSHFNKNIQRFKGLGEMMPEQLWKTTMSPEMRILKKIKLS 646 Query: 598 ERRYPKAMLKEL 609 + + + + L Sbjct: 647 DAKRADKIFEVL 658 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 64/297 (21%), Positives = 121/297 (40%), Gaps = 46/297 (15%) Query: 554 QYQISIAL-DGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQ 612 ++ + + + +H + L LEK +S NA + E K++L+ + Sbjct: 388 KFLVENLIKEEGEIHFIENNSNLLNIVLEKAISAMNAYEASKKAKELVRKKSILEGITLP 447 Query: 613 PTLTEADLSDEQ-TVTRWVNALVSELNDKEQHGSQWKF---------DVHTNAEQNLF-- 660 L++ + Q + V + + K+ +++ ++ N E+ ++ Sbjct: 448 GKLSDCSEKNPQFSEIFIVEGDSAGGSAKQARDRRFQAILPLRGKIINIEKNDEKKIYNN 507 Query: 661 ------------------EPIVRVRTHGVDTDYPLDHE------FITGGEYRRICTLGEK 696 E + +R H + D + + YR L +K Sbjct: 508 TEIQSLISALGLGVRGNDEDLSNLRYHKIIIMTDADVDGAHIRTLLLTFFYRYQKELIDK 567 Query: 697 LRGLLEEDAFIE-------RGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQ 749 + + ++ E L+++++ S +IQR+KGLGEM PEQ Sbjct: 568 GFVYIACPPLYKIENKKNKNLDKNTQYCYSEGELEYIIQSSHFNKNIQRFKGLGEMMPEQ 627 Query: 750 LWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENA--LKAANIDI 804 LW+TTM PE R + ++ + DA AD++F LMG V R+ FI+ A +K ++DI Sbjct: 628 LWKTTMSPEMRILKKIKLSDAKRADKIFEVLMGSKVPERKKFIQIQASLIKIDSLDI 684 >UniRef50_Q4AAR9 Topoisomerase IV subunit B n=9 Tax=Mycoplasma RepID=Q4AAR9_MYCHJ Length = 642 Score = 573 bits (1477), Expect = e-162, Method: Composition-based stats. Identities = 231/562 (41%), Positives = 346/562 (61%), Gaps = 10/562 (1%) Query: 4 SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTI 63 +Y +K+LKGL+AVRKRPGMYIG TD GLH +++E+ DNAIDEA+AG EI + I Sbjct: 2 TYSVEKLKLLKGLEAVRKRPGMYIGSTDKN-GLHQLIWEIFDNAIDEAIAGFANEISLII 60 Query: 64 HADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVV 123 ++DNS+ + D+GRGIPT IH + G + E++ + LH+G KF + YK +GGLHGVG SVV Sbjct: 61 NSDNSIEISDNGRGIPTEIHKKTGKTGVELVFSELHSGAKFSTDIYKTAGGLHGVGSSVV 120 Query: 124 NALSQKLELVIQREGKIHRQIY-EHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEF 182 NALS+KLE+ I R+ K+ + G + + G++ TGT +RFWP F++ +EF Sbjct: 121 NALSEKLEVYINRDKKLFYTSFINGGKIETRTKIIGKSATTGTKIRFWPDFSLFSH-SEF 179 Query: 183 EYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFY 242 + E++ RLRE FL + + I D ++ E F E GI++F+E+LN ++ IH + Sbjct: 180 DSEMIISRLRETCFLINNLKINFFDTKNNIEKKFLCERGIESFIEFLNNDQEKIHDKVIT 239 Query: 243 FSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGY 302 F + I VE Q+ + QENI F NN+ GG+H GF++ + +N Y + Sbjct: 240 FKEKMQEIIVEFGFQYVNSQQENIISFVNNVKTNLGGSHENGFKSGFLKAINTYGQQNNL 299 Query: 303 SKKAKVSATGDDAREGLIAVVSVKVPDP--KFSSQTKDKLVSSEVKSAVEQQMNELLAEY 360 K K DA+ GL AV+S+++P+ +F QTK+KL + K+ E+ + L + Sbjct: 300 LK-TKQILEFSDAKVGLSAVLSLRIPESILEFVGQTKNKLSTILAKTVTEEVIFTNLMTF 358 Query: 361 LLENPTDAKIVVGKIIDAARAREAARRA--REMTRRKGALDLAGLPGKLADCQERDPALS 418 N A ++ I++ R+ ++ + T + + L GKL + Sbjct: 359 FALNKEVASKIINFILETYTQRQKSKLSIIESKTSKSITKEKRILSGKLTPANSKKAMNR 418 Query: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 EL+LVEG+SAGGSAK RNR+ QAILPLKGKI+N +K R +L ++E+ +I+ALG GI Sbjct: 419 ELFLVEGESAGGSAKLARNREFQAILPLKGKIVNAQKTRLIDLLKNEEIIAIISALGTGI 478 Query: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKV- 537 G++ +N L Y IIIMTDAD DG+HI+ L+LTF + M ++E+G VYIAQPPLY++ Sbjct: 479 GQN-FNLKNLNYGKIIIMTDADNDGAHIQILILTFLFLHMRPLIEKGFVYIAQPPLYRIS 537 Query: 538 KKGKQEQYIKDDEAMDQYQISI 559 +KG+++ YI D+E ++Y + Sbjct: 538 EKGRKDIYIWDEEKFEKYIKNS 559 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 52/261 (19%), Positives = 102/261 (39%), Gaps = 15/261 (5%) Query: 536 KVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMIN 595 ++ K + I + + + L S A+ E + K+ Sbjct: 377 YTQRQKSKLSIIESKTSKSITKEKRILSGKLTPANSKKAMNRELFLVEGESAGGSAKLAR 436 Query: 596 RMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNA 655 E + + +++ DL + + ++AL + + N Sbjct: 437 NREFQAILPLKGKIVNAQKTRLIDLLKNEEIIAIISALGTGIGQN------------FNL 484 Query: 656 EQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAF-IERGERRQ 714 + + I+ + D + + +T + + + + + I R+ Sbjct: 485 KNLNYGKIIIMTDADNDGAH-IQILILTFLFLHMRPLIEKGFVYIAQPPLYRISEKGRKD 543 Query: 715 PVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAAD 774 E+ + +K S L IQRYKGLGEMN QLW+TTMDPE R + +V +++ + Sbjct: 544 IYIWDEEKFEKYIKNST-NLQIQRYKGLGEMNANQLWQTTMDPERRTLEKVLIENYPKVE 602 Query: 775 QLFTTLMGDAVEPRRAFIEEN 795 + F LMG+ + R+++IE+N Sbjct: 603 KNFQILMGERADLRKSWIEKN 623 >UniRef50_P43703 DNA topoisomerase 4 subunit B n=456 Tax=Bacteria RepID=PARE_HAEIN Length = 632 Score = 568 bits (1464), Expect = e-160, Method: Composition-based stats. Identities = 221/605 (36%), Positives = 330/605 (54%), Gaps = 16/605 (2%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 M+ +Y + I VLK L+ V+ RPGMY TD +H+ EV+DN++DEALAG +I Sbjct: 1 MTTNYSAQEITVLKDLEPVQIRPGMY---TDTTR-PNHLAQEVIDNSVDEALAGFATKIE 56 Query: 61 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 V +H D S+ V D+GRG+P IHP EGVS EVI+T LHAGGKF + +Y+ +GGLHGVG+ Sbjct: 57 VILHPDQSIEVTDNGRGMPVDIHPTEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGI 116 Query: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK--TGTMVRFWPSLETFTN 178 SVVNALS+++++ ++R G+I++ +E+G L + G + TGT+V F P+ + F + Sbjct: 117 SVVNALSERVDIQVKRNGEIYKIAFENGSKVEELEIIGTCGRRTTGTIVHFKPNPKYFDS 176 Query: 179 VTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHP 238 +F L LR + L SG+ I+ DK + +D + YE G+ ++ + Sbjct: 177 -AKFSVSRLRHLLRAKAVLCSGLEIKFIDKVNNTQDIWLYEDGLSDYLIEAVNGFETLPK 235 Query: 239 NIFYFSTEKDGIGVEVALQWNDGFQENI-YCFTNNIPQRDGGTHLAGFRAAMTRTLNAYM 297 F + V AL W E I + N IP GGTH+ G R + + + Sbjct: 236 KPFVGEFKGANEAVSWALLWLPEGGELIGESYVNLIPTIQGGTHVNGLRQGLLDAIREFC 295 Query: 298 DKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELL 357 + + V T DD + ++S+K+ D +F+ QTK++L S + V + + Sbjct: 296 EFRNLLPRG-VKLTADDIWDRCSYILSLKMQDAQFAGQTKERLSSRQSAVFVSGVLKDAF 354 Query: 358 AEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPAL 417 + +L +N DA+ + I +A+ R R A+++ R+K A LPGKLADC +D Sbjct: 355 SLWLNQNVQDAEKLAEIAISSAQRR--LRAAKKVVRKKLVSGPA-LPGKLADCGSQDLEK 411 Query: 418 SELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCG 477 +EL+LVEGDSAGGSAKQ R+R+ QAILPL+GKILN + D++L S E+ + ALG Sbjct: 412 TELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPDQVLGSTEIHDIAVALG-- 469 Query: 478 IGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKV 537 I D + +LRY + I+ DAD DG HI TLL F R P++V+ GHVY+A PPLY++ Sbjct: 470 IDPDSNDLSQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMPPLYRI 529 Query: 538 KKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRM 597 K+ Y D+ + + N GE + E + Sbjct: 530 DLNKEVFYALDENEKEAILDRLKNKKGKP--NVQRFKGLGEMNPSQLRETTMDPNTRRLV 587 Query: 598 ERRYP 602 + Y Sbjct: 588 QLTYD 592 Score = 78.1 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 8/100 (8%) Query: 709 RGERRQPVASFEQALDWLVK--ESRRGL-SIQRYKGLGEMNPEQLWETTMDPESRRMLRV 765 + A E + ++ ++++G ++QR+KGLGEMNP QL ETTMDP +RR++++ Sbjct: 530 DLNKEVFYALDENEKEAILDRLKNKKGKPNVQRFKGLGEMNPSQLRETTMDPNTRRLVQL 589 Query: 766 TV----KDAIAADQLFTTLMGDA-VEPRRAFIEENALKAA 800 T +L L+ E R+ +++ + Sbjct: 590 TYDLGEDQGSDTLELMDMLLAKKRSEDRKNWLQAKGDQVD 629 >UniRef50_D0WQJ3 Putative DNA gyrase subunit B n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WQJ3_9ACTO Length = 735 Score = 565 bits (1455), Expect = e-159, Method: Composition-based stats. Identities = 245/708 (34%), Positives = 369/708 (52%), Gaps = 85/708 (12%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 + SY + ++VL+GL+AVRKRPGMYIG TD GL H ++E++DNA+DEAL GH + V Sbjct: 15 NESYTARHLQVLEGLEAVRKRPGMYIGSTD-SRGLMHCLWEIIDNAVDEALEGHADAVEV 73 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 ++AD SV V+D+GRG+P P G+S EV+ T LHAGGKF SY SGGLHGVG S Sbjct: 74 RLYADGSVEVRDNGRGVPVDEVPGVGLSGVEVVYTKLHAGGKFGGGSYGSSGGLHGVGAS 133 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGV------------PQAP---------LAVTGE- 159 VVNALS+++++ + R GK ++ + G P+AP L V G+ Sbjct: 134 VVNALSERMDVQVDRGGKTYQMQFHRGEPGRFSDGASGPDPRAPFSAFTESSVLDVVGKV 193 Query: 160 -TEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDG------- 211 K+GT VR+W E F F YE L +R R+ +FL G++I L D+R+G Sbjct: 194 AKNKSGTRVRYWADPEIFLASAAFSYEELVERARQTAFLVPGLTISLVDEREGAAGENAA 253 Query: 212 ------------------KEDHFHYEGGIKAFVEYLNKNKTPI-----------HPNIFY 242 + + F ++GG FV++L + + Sbjct: 254 GENAEGEGDEGQAPHEGPRTETFRFDGGTVDFVDFLAPDAAVTATMRLTGEGTFAEKVPV 313 Query: 243 FSTEKDG---------IGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTL 293 E + V+VAL+W ++ + F N I GGTH +GF + + + Sbjct: 314 LDAESGHLVSREVERAVAVDVALRWGKDYETRVESFVNIIRTPGGGTHQSGFEQGLMKVV 373 Query: 294 NAYMDKEGYSKK---AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVE 350 + ++ K DD GL AVV+V++P+P+F QTK+ L +S V+ V Sbjct: 374 RSLVESNSRRLKMSAKDPRIEKDDVLAGLTAVVTVRLPEPQFEGQTKEILGTSAVRGIVS 433 Query: 351 QQMNELLAEYL----LENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGK 406 + L L + T+ ++ K++ RAR AR +E++RRK AL+ + LP K Sbjct: 434 GVVERELGAILGSSKRDQKTETSRLLEKVVAEMRARVTARMHKEISRRKNALEASSLPAK 493 Query: 407 LADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQE 466 LADC+ D A +EL++VEGDSA G+AK R+ + QA+LP++GKILNV+KA +L ++E Sbjct: 494 LADCRSEDVAETELFIVEGDSALGTAKLARSSEFQALLPIRGKILNVQKASTADILKNKE 553 Query: 467 VATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGH 526 V+ +I +G G GR ++ RY +I+MTDADVDG+HIRTLLLT F+R M +V+ G Sbjct: 554 VSEIIQVVGAGSGR-TFDLPAARYGKVIMMTDADVDGAHIRTLLLTLFFRYMRPLVQEGR 612 Query: 527 VYIAQPPLYKVK----KGKQEQYI--KDDEAMDQYQISIALDGATLHTNASAPALAGEAL 580 VY A PPL++++ KG ++ YI ++ + + G + GE Sbjct: 613 VYAAVPPLHRIEVSGGKGGKKSYIYTYSEDQLHAELRKLERAGKSYREPIQRYKGLGEMD 672 Query: 581 EKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTR 628 ++E RR + L+ T+ E + ++ R Sbjct: 673 AHQLAETTMDPSRRTL--RRIRMEDERALMEAETVFELLMGNDVAPRR 718 Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 13/162 (8%) Query: 652 HTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIE--- 708 + + ++ + VD + Y R ++ + IE Sbjct: 568 TFDLPAARYGKVIMMTDADVDGAHIRTLLLTLFFRYMRPLVQEGRVYAAVPPLHRIEVSG 627 Query: 709 -RGERRQPVASFEQ-----ALDWLVKESRRGLS-IQRYKGLGEMNPEQLWETTMDPESRR 761 +G ++ + ++ + L L + + IQRYKGLGEM+ QL ETTMDP R Sbjct: 628 GKGGKKSYIYTYSEDQLHAELRKLERAGKSYREPIQRYKGLGEMDAHQLAETTMDPSRRT 687 Query: 762 MLRVTVKDA---IAADQLFTTLMGDAVEPRRAFIEENALKAA 800 + R+ ++D + A+ +F LMG+ V PRR FI E A Sbjct: 688 LRRIRMEDERALMEAETVFELLMGNDVAPRREFIVEGAAAVD 729 >UniRef50_C0W359 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W359_9ACTO Length = 746 Score = 564 bits (1454), Expect = e-159, Method: Composition-based stats. Identities = 251/738 (34%), Positives = 368/738 (49%), Gaps = 124/738 (16%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 S+SY + + VL+GL+AVRKRPGMYIG TD GL H V+E++DN++DEAL G+ I V Sbjct: 5 SSSYSARHLSVLEGLEAVRKRPGMYIGSTDQ-RGLMHCVWEIIDNSVDEALEGYGDSIAV 63 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 T+H D S+ V+D+GRG+P + P G++ E++ T LHAGGKF SY +GGLHGVG S Sbjct: 64 TVHEDGSIEVRDNGRGVPVDVEPGSGLTGVELVYTKLHAGGKFGGGSYGAAGGLHGVGAS 123 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVP----------------------QAPLAVTGE 159 VVNALS+++++ + R GK + + GVP + L V G+ Sbjct: 124 VVNALSERMDVAVDRGGKTYAMSFHRGVPGVFDDPDPAHPRPDTPFTEYTEASELRVIGK 183 Query: 160 TEK--TGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRD------- 210 ++ +GT VR+W + F +E++ L RLR+ SFL G+S+ L D+R Sbjct: 184 VKRGVSGTRVRYWADPQIFPRPSEYDAAALRARLRQTSFLVPGLSLTLTDERSAEEAARA 243 Query: 211 ---------------------------------------GKEDHFHYEGGIKAFVEYLNK 231 + F +GG + FV++L Sbjct: 244 EKAAPSGSGAAGDDPALRASAKNATEEASDLFASQTQAPEGSEVFLAKGGTRDFVDFLAT 303 Query: 232 NKTPIHPNIFYFSTE----------------------KDGIGVEVALQWNDGFQENIYCF 269 + + + F + E + V+VAL+W G+ F Sbjct: 304 DASVT--DTFRLTGEGTYTETVQQLDKKSGHLRPVEVERTCSVDVALRWGIGYDTIERSF 361 Query: 270 TNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKA---KVSATGDDAREGLIAVVSVK 326 N I GGTHL GF A+T+ L +D + K DD G+ AVV+V+ Sbjct: 362 VNIIATPMGGTHLTGFEQAVTKVLRKQIDSNARALKVTARDGKIEKDDILAGMTAVVTVR 421 Query: 327 VPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIV----VGKIIDAARAR 382 VP+P+F QTK+ L ++ V+ V + + + L L + D K K++ RAR Sbjct: 422 VPEPQFEGQTKEVLGTAPVRQIVAKVVEKELTALLTSSKRDLKTQSRALQEKVVGEMRAR 481 Query: 383 EAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQA 442 +AR +E+TRRK AL+ + LP KLADC+ D A SEL++VEGDSA G+AK RN + QA Sbjct: 482 ISARMHKEITRRKTALETSTLPAKLADCRSDDVAASELFIVEGDSALGTAKNARNSEFQA 541 Query: 443 ILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVD 502 +LP++GKILNV+KA ML + E + +I +G G GR ++ D RY +I+MTDADVD Sbjct: 542 LLPIRGKILNVQKASQADMLRNAECSAIIQVVGAGSGR-TFDLDSARYGKVILMTDADVD 600 Query: 503 GSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKV------KKGKQEQYIKDDEAMDQYQ 556 G+HIRTLLLT F+R M ++E G VY A PPL+++ ++ K+ Y D+ + + Sbjct: 601 GAHIRTLLLTLFFRYMRPMIEAGRVYAAVPPLHRIEVSAQGRRKKEVIYTYSDDELVR-- 658 Query: 557 ISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME------RRYPKAMLKELI 610 + K + E +A Q ME RR EL+ Sbjct: 659 -------TLRKLEKQGRSFKEPQRYKGLGEMDAHQLAETTMEPEHRTLRRITLGDEAELL 711 Query: 611 YQPTLTEADLSDEQTVTR 628 + E + R Sbjct: 712 EAENVFELLMGSSVEPRR 729 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 48/162 (29%), Positives = 69/162 (42%), Gaps = 14/162 (8%) Query: 652 HTNAEQNLFEPIVRVRTHGVDTDYP-------LDHEFITGGEYRRICTLGEKLRGLLEED 704 + + + ++ + VD + E R+ L +E Sbjct: 580 TFDLDSARYGKVILMTDADVDGAHIRTLLLTLFFRYMRPMIEAGRVYAAVPPLHR-IEVS 638 Query: 705 AFIERGERRQPVASFEQA---LDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRR 761 A R + S ++ L L K+ R QRYKGLGEM+ QL ETTM+PE R Sbjct: 639 AQGRRKKEVIYTYSDDELVRTLRKLEKQGRSFKEPQRYKGLGEMDAHQLAETTMEPEHRT 698 Query: 762 MLRVTVKDAI---AADQLFTTLMGDAVEPRRAFIEENALKAA 800 + R+T+ D A+ +F LMG +VEPRR FI E A Sbjct: 699 LRRITLGDEAELLEAENVFELLMGSSVEPRRDFIVEGAQDID 740 >UniRef50_D1C5K6 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C5K6_SPHTD Length = 674 Score = 560 bits (1443), Expect = e-158, Method: Composition-based stats. Identities = 243/655 (37%), Positives = 368/655 (56%), Gaps = 29/655 (4%) Query: 4 SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTI 63 Y + I+VL+G++A+R RPGMYIG T TGLHH+++E +DNA DEA+AG+ K I V I Sbjct: 33 GYSGADIRVLEGIEAIRTRPGMYIGSTGT-TGLHHLIWEALDNATDEAIAGYGKNIWVEI 91 Query: 64 HADNSVSVQDDGRGIPTGIHPEEG--VSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 D V+V+D+ RGIP G + A VIMTV H+GGKF+ +YK +GGLHGVG + Sbjct: 92 DRDGWVTVRDEARGIPFDPKEINGKTLPTATVIMTVPHSGGKFEQGAYKTAGGLHGVGAT 151 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVT- 180 V+NALS++LEL I R+G+ Q + GVP + ++TGT +R+ E F + Sbjct: 152 VINALSERLELTIWRDGQQFFQTFTRGVPGKHTITPCDPKRTGTQLRWLFDREIFADPAV 211 Query: 181 EFEYEILAKRLRELSFLNSG----VSIRLRDKRDGKEDHFHYEGGIKAFVEYL---NKNK 233 ++ +++ RLR ++LN G + I D + E FH E G+ +VE L +K Sbjct: 212 GYQRDVVESRLRAAAYLNRGIAYHLRIWDDDAGEMVEQTFHSERGLVDYVEELRPRDKES 271 Query: 234 TPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTL 293 P+ + + +D + +EVA+Q N G + + F N + +GGTH +GF+AA+T+ L Sbjct: 272 QPLFKEVVAIAETRDDVVIEVAVQPNRGERTRVVSFANGVRTIEGGTHESGFQAALTKVL 331 Query: 294 NAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQM 353 N + G +KK + D REGL+A+VSVK+ +P+F QTK++L +S V V + Sbjct: 332 NDQAIRLGVTKKRE--FDADLIREGLVAIVSVKLTNPQFEGQTKNRLTNSGVDGIVRSVV 389 Query: 354 NELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMT-----RRKGALDLAGLPGKLA 408 + L ++ N + A+ V + +AR+AA+ A + RR GAL A + K Sbjct: 390 GDALTRWMEANESAAREWVRTLEQRRKARDAAKAAARLVMTGKSRRNGALLDAAISDKFI 449 Query: 409 DCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 468 C +DP +ELYLVEGDSAGGSA QGR QAIL L GK LNV +A +++ ++E+ Sbjct: 450 PCNTKDPERAELYLVEGDSAGGSASQGRFSDFQAILKLSGKPLNVARANIERVAKNEEIR 509 Query: 469 TLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVY 528 TL+ +G G R ++ +LR+H IIIMTDADVDG HI+ LLLT F +++P+++ERGH+Y Sbjct: 510 TLLQVIGTG-SRQAFDISRLRFHKIIIMTDADVDGMHIQALLLTLFLQELPQLIERGHIY 568 Query: 529 IAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYN 588 +A PPLY V++ + +++DDEA+ ++ G GE + + E Sbjct: 569 LAAPPLYSVRQNGKVTWLRDDEALREWM-----KGRKGPFELKRYKGLGEMNPRELRETT 623 Query: 589 ATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQH 643 + RR + L++ + + D R +E Sbjct: 624 MDPER-----RRLRRVTLEDAALAERMVYELMEDTNAEGRRTFLAQRARKYQEID 673 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 42/107 (39%), Positives = 60/107 (56%), Gaps = 1/107 (0%) Query: 699 GLLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPE 758 L + R + ++AL +K + ++RYKGLGEMNP +L ETTMDPE Sbjct: 568 YLAAPPLYSVRQNGKVTWLRDDEALREWMKGRKGPFELKRYKGLGEMNPRELRETTMDPE 627 Query: 759 SRRMLRVTVKDAIAADQLFTTLMGD-AVEPRRAFIEENALKAANIDI 804 RR+ RVT++DA A+++ LM D E RR F+ + A K ID+ Sbjct: 628 RRRLRRVTLEDAALAERMVYELMEDTNAEGRRTFLAQRARKYQEIDV 674 >UniRef50_Q9FAX1 DNA gyrase subunit B (Fragment) n=60 Tax=Bacteria RepID=GYRB_FLEEL Length = 478 Score = 557 bits (1436), Expect = e-157, Method: Composition-based stats. Identities = 246/471 (52%), Positives = 327/471 (69%), Gaps = 11/471 (2%) Query: 105 DDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTG 164 D ++YKVSGGLHGVGVS VNALS L + REGK+ +Q Y G PQ + V G++++TG Sbjct: 1 DKDTYKVSGGLHGVGVSCVNALSSLLVATVHREGKVFQQKYSTGNPQGAVEVVGQSDRTG 60 Query: 165 TMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE------DHFHY 218 T + F P F TE++YE ++KRLRELS+LN G+ + L D R+ E + F Sbjct: 61 TTIYFEPDATIFA-TTEYKYETVSKRLRELSYLNKGIRLTLTDLRETDEQGRHLYEEFFS 119 Query: 219 EGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDG 278 EGG+K FVE+L+ + P+ P + I VEVAL +N+ + EN++ + NNI +G Sbjct: 120 EGGLKEFVEHLDSTRQPLLPAPIHVEKTDGDIPVEVALIYNNSYSENVFSYVNNINTHEG 179 Query: 279 GTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKD 338 GTH++GFR A+TRTL +Y DK G +KAKV TGDD REGL AV+S+KV +P+F QTK Sbjct: 180 GTHVSGFRRALTRTLKSYADKSGMLEKAKVEITGDDFREGLTAVISIKVAEPQFEGQTKT 239 Query: 339 KLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGAL 398 KL +S+ AV+ ++E+L YL ENP +AK+++ K+I AA+AR+AAR+AREM +RK + Sbjct: 240 KLGNSDAIGAVDNAVSEILGYYLEENPREAKLIIQKVILAAQARQAARKAREMVQRKNVM 299 Query: 399 DLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARF 458 LPGKLADC + +P ELYLVEGDSAGGSAKQGR+R QAILPL+GKILNVEKA+ Sbjct: 300 GGTSLPGKLADCSDTNPERCELYLVEGDSAGGSAKQGRDRSFQAILPLRGKILNVEKAQE 359 Query: 459 DKMLSSQEVATLITALGCGIGRDEY----NPDKLRYHSIIIMTDADVDGSHIRTLLLTFF 514 K+ ++E+ +ITA+G G +E N KLRYH IIIMTDADVDGSHIRTL+LTFF Sbjct: 360 YKIYDNEEIKNMITAMGVTFGTEEDSKALNLTKLRYHKIIIMTDADVDGSHIRTLILTFF 419 Query: 515 YRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGAT 565 +R M E++E+G++Y+A PPLY VKKGK+E+Y D D IA +G Sbjct: 420 FRYMRELIEQGYLYVALPPLYIVKKGKEERYAWSDAERDAIIREIAPEGKE 470 >UniRef50_Q9FAX2 DNA gyrase subunit B (Fragment) n=166 Tax=root RepID=GYRB_FLEJA Length = 481 Score = 548 bits (1411), Expect = e-154, Method: Composition-based stats. Identities = 243/470 (51%), Positives = 315/470 (67%), Gaps = 15/470 (3%) Query: 105 DDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTG 164 D N+YKVSGGLHGVGVS VNALS L + + REGKI Q Y GVPQ + G T TG Sbjct: 1 DKNTYKVSGGLHGVGVSCVNALSTVLHVTVHREGKIFEQEYHRGVPQYAVREIGATTDTG 60 Query: 165 TMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE------DHFHY 218 T F P E FT + + EILA RLREL++LN + I L D+R+ E + F+ Sbjct: 61 TTTHFKPDGEIFTETS-YNREILAGRLRELAYLNRKIRITLTDEREKDEQGNVLSEPFYS 119 Query: 219 EGGIKAFVEYLNKN--KTPIHPNIFYFSTEK--DGIGVEVALQWNDGFQENIYCFTNNIP 274 EGGI FV+ L++N + + P + + VEV+LQ+ND F ENI+ + NNI Sbjct: 120 EGGIMEFVQMLDRNGRRNSLLPAPIFIEAHDAPSNVAVEVSLQYNDSFSENIFSYVNNIN 179 Query: 275 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 334 +GGTH+AGFR A+TR Y D+ +K+K+ TGDD REGL A+VSVKVP+P+F Sbjct: 180 TIEGGTHVAGFRRAITRVFKTYGDRNKLFEKSKIEVTGDDFREGLSAIVSVKVPEPQFEG 239 Query: 335 QTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRR 394 QTK KL +S+V V+ + ++L YL E+P +A+ V+ K++ AA+AREAAR+AR++ +R Sbjct: 240 QTKTKLGNSDVMGVVDSAVADVLNAYLEEHPKEARTVINKVVLAAQAREAARKARQLVQR 299 Query: 395 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 454 K L +GLPGKLADC E DP ELYLVEGDSAGG+AKQGRNR QAILPL+GKILNVE Sbjct: 300 KSVLTGSGLPGKLADCSENDPEKCELYLVEGDSAGGTAKQGRNRAFQAILPLRGKILNVE 359 Query: 455 KARFDKMLSSQEVATLITALGCGIGRDEYN----PDKLRYHSIIIMTDADVDGSHIRTLL 510 KA K+ ++E+ + TALG IG +E + KLRYH +IIMTDADVDGSHI TL+ Sbjct: 360 KAMEHKIYENEEIKNIFTALGVTIGTEEDDKALNLSKLRYHKLIIMTDADVDGSHIATLI 419 Query: 511 LTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIA 560 LTF +R M +VE+G+VYIAQPPLY VKKGK++ Y +E ++A Sbjct: 420 LTFVFRYMKALVEQGYVYIAQPPLYLVKKGKEQIYAWTEEQRKAAVATLA 469 >UniRef50_D0RNK2 DNA topoisomerase IV, B subunit n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RNK2_9RICK Length = 646 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 227/647 (35%), Positives = 350/647 (54%), Gaps = 20/647 (3%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 +S +Y + I+VL+GL VRKRPGMYIG TD+ T HH+ E++DN+IDEA+AG+ KEI+ Sbjct: 3 ISKTYSAKDIEVLEGLAPVRKRPGMYIGGTDE-TAYHHLANEILDNSIDEAVAGYAKEIV 61 Query: 61 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 + + N++ + DDGRGIP HP++ +A EV+MT LH+GGKF+D+ YK S GLHGVG+ Sbjct: 62 IKLVNKNTIIISDDGRGIPIDKHPKKKKTALEVVMTTLHSGGKFNDSVYKSSAGLHGVGL 121 Query: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNV 179 SVVNALS KL + + + KI+ Q Y G L G+ + K GT + F P E F Sbjct: 122 SVVNALSSKLNIQVTKSSKIYSQDYSKGKILNKLKTKGKNKIKNGTQITFSPDPEIFGKD 181 Query: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRD--------GKEDHFHYEGGIKAFVEYLNK 231 F+ E + + + ++L G+ I +D ++ + G++ F++ Sbjct: 182 VNFKPEKIYELAKNKAYLQKGIKISWECNKDLLNRKSSVPSKETLLFSKGLEDFLKNEIN 241 Query: 232 NKTPIHPNIFYFST--EKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 +H + + S E +E ALQ+N + F N + +GGTH AGFR+ + Sbjct: 242 QNNVLHEKVSFQSGNLEDKKGKIEFALQFNKEKIKYNKAFCNTVYNMNGGTHDAGFRSGI 301 Query: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 +++ Y + K AT DD + ++SV + +P+F QTK KL S+ V+ Sbjct: 302 AKSIRKYAKNKN--NKIVSKATQDDIFDQAAYIISVYISNPEFEGQTKHKLSSNFVQKYC 359 Query: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 + + E+L N AK ++ + + R + + R+ A LPGKL+D Sbjct: 360 DSFASSAFDEWLNRNSKAAKNILNVLEEKIREKNIYDL-NQNVERQSAFRKIRLPGKLSD 418 Query: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 C +EL++VEGDSAGGSAKQ R+R QAILPL+GKILNV+ + K+L++ E+ Sbjct: 419 CTSDKTEGTELFIVEGDSAGGSAKQARDRTTQAILPLRGKILNVKSSNAAKILANSEINN 478 Query: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 L+ ALGCG G++ D LRY IIIMTDADVDG HI TLLLTFF +MP+++ GH+Y+ Sbjct: 479 LLQALGCGRGKNYSKKD-LRYEKIIIMTDADVDGDHISTLLLTFFISEMPQLILDGHLYL 537 Query: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNA 589 A PPLYK+ + Y D+ ++ + S GE + + E Sbjct: 538 AVPPLYKLNISGKSTYAIDESEKNKLLKDNKKAKIEI----SRFKGLGEMMPAQLKETTM 593 Query: 590 TQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSE 636 + ++ P K +++ + + ++++ ++ Sbjct: 594 NIETRKLIKVVLPVQKPKMKKTNKLVSDLMGKNAELRLKFISENANK 640 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 40/156 (25%), Positives = 66/156 (42%), Gaps = 4/156 (2%) Query: 653 TNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGER 712 + + +E I+ + VD D+ L L + + + Sbjct: 491 YSKKDLRYEKIIIMTDADVDGDHISTLLLTFFISEMPQLILDGHLYLAVPPLYKLNISGK 550 Query: 713 RQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTV----K 768 + L + + I R+KGLGEM P QL ETTM+ E+R++++V + Sbjct: 551 STYAIDESEKNKLLKDNKKAKIEISRFKGLGEMMPAQLKETTMNIETRKLIKVVLPVQKP 610 Query: 769 DAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 ++L + LMG E R FI ENA K+ ++DI Sbjct: 611 KMKKTNKLVSDLMGKNAELRLKFISENANKSLSLDI 646 >UniRef50_A7I8U0 DNA gyrase subunit B n=1 Tax=Candidatus Methanoregula boonei 6A8 RepID=A7I8U0_METB6 Length = 708 Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 211/433 (48%), Positives = 298/433 (68%), Gaps = 5/433 (1%) Query: 151 QAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRD 210 +A L T + TGT + F P F T F+Y++LA RLREL+FLN+G++I + D+R Sbjct: 224 RASLLATLGNKLTGTRIHFVPDASIFETTT-FDYDVLAHRLRELAFLNAGLTIIITDERT 282 Query: 211 GKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEK--DGIGVEVALQWNDGFQENIYC 268 G + Y GG+ FV+YLN+ +HPN Y + + + + +EVA+Q+ G+ E +Y Sbjct: 283 GDSATYCYAGGLSEFVKYLNEGNEVLHPNPIYITKKDAENKLDLEVAMQYTTGYDEKLYT 342 Query: 269 FTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKA-KVSATGDDAREGLIAVVSVKV 327 + N++ R+GGTHL GFR+A+TR +N + G K+ +V+ G+D REGL +VVSVK+ Sbjct: 343 YVNSVNTREGGTHLEGFRSAITRGINVVAKRNGIIKENAQVTLRGEDVREGLTSVVSVKM 402 Query: 328 PDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARR 387 +P+F QTK +L +S VK V+ + L EY ENP KI+V K + AA+AREAAR Sbjct: 403 ANPQFEGQTKMRLGNSSVKGIVDSLVYAALTEYFDENPGVLKIIVEKALSAAKAREAARN 462 Query: 388 AREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLK 447 AR++ RRK +L+ AGLPGKL+DC ERDPA SE+Y+VEGDSAGGSAKQGR+RK QAILPL+ Sbjct: 463 ARDLARRKSSLESAGLPGKLSDCSERDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLR 522 Query: 448 GKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIR 507 GKILNVEKA ++L + E+ TLI A+G GIG ++P++ RYH I+IMTDADVDG+HIR Sbjct: 523 GKILNVEKAGEHQILKNAEIQTLINAIGTGIGEK-FDPERARYHRIVIMTDADVDGAHIR 581 Query: 508 TLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLH 567 TLLLTFFYR M +++E G+VYIAQPPL+++ KGK+E+Y+ + M + ++ G ++ Sbjct: 582 TLLLTFFYRYMRKLIELGYVYIAQPPLFRIAKGKEEKYVYKEAEMQKVSAAMGDKGVSIQ 641 Query: 568 TNASAPALAGEAL 580 + + L Sbjct: 642 RYKGLGEMNAQQL 654 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 90/160 (56%), Positives = 112/160 (70%), Gaps = 1/160 (0%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 M+++YD+S I VL+GL VR+RP MYIG TD GLHH+V+EVVDN+IDEALAG C I Sbjct: 1 MTDTYDASHITVLEGLQPVRERPAMYIGSTDT-RGLHHLVYEVVDNSIDEALAGFCNRIC 59 Query: 61 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 V I+ D S+ V+D+GRGIP + SA EV++TVLHAGGKFD +Y+VSGGLHGVGV Sbjct: 60 VVINKDGSLMVEDNGRGIPVDTMEKNHKSALEVVLTVLHAGGKFDKETYQVSGGLHGVGV 119 Query: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGET 160 SVVNALS L + R+G I+ + G PL ET Sbjct: 120 SVVNALSNWLSARVYRDGNIYEMRFSQGKTTLPLTTREET 159 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 54/155 (34%), Positives = 82/155 (52%), Gaps = 4/155 (2%) Query: 652 HTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIE--R 709 + E+ + IV + VD + + YR + L E + + + Sbjct: 556 KFDPERARYHRIVIMTDADVDGAHI--RTLLLTFFYRYMRKLIELGYVYIAQPPLFRIAK 613 Query: 710 GERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKD 769 G+ + V + +G+SIQRYKGLGEMN +QLW+TTMDPE+R L+V+++D Sbjct: 614 GKEEKYVYKEAEMQKVSAAMGDKGVSIQRYKGLGEMNAQQLWDTTMDPENRIFLKVSIED 673 Query: 770 AIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 A AD++F TLMG VE R+ FI +A + N+DI Sbjct: 674 AYEADEMFKTLMGKDVEIRKNFIMRHAKEVTNLDI 708 >UniRef50_B3R5I8 DNA topoisomerase IV, subunit B n=15 Tax=Proteobacteria RepID=B3R5I8_CUPTR Length = 663 Score = 526 bits (1356), Expect = e-148, Method: Composition-based stats. Identities = 235/666 (35%), Positives = 351/666 (52%), Gaps = 43/666 (6%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 ++ Y SSI+VLKGL+ V++RPGMY TD+ H+V EV+DNA DEAL GH EI+V Sbjct: 5 TSQYSESSIRVLKGLEPVKQRPGMYT-RTDNP---LHIVQEVIDNASDEALGGHGSEILV 60 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDN---SYKVSGGLHGV 118 T+H D S+SV+DDGRGIP GIHPEEGV E++ T LHAGGKFD +Y SGGLHGV Sbjct: 61 TLHRDGSLSVEDDGRGIPVGIHPEEGVPVVEIVFTRLHAGGKFDKGKGGAYAFSGGLHGV 120 Query: 119 GVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPL---AVTGETEKTGTMVRFWPSLET 175 GVSV NALS +L++ + R+G + G PL + +K GT V+ WP Sbjct: 121 GVSVTNALSTQLDVTVWRDGMCSTLTFSGGDVTVPLASRKLERGEKKNGTRVQVWPDARY 180 Query: 176 FTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAF-VEYLNKNKT 234 F + E L + LR + L GV + L ++ G+ + Y+ G+K + VE L + Sbjct: 181 FDSAAIPLAE-LQRLLRSKAVLLPGVKVTLVTEKTGERQTWQYDQGLKGYLVEALAQGSG 239 Query: 235 -----PIHPNIFYFSTEK--------DGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTH 281 P+ + + DG G + W + + N IP GGTH Sbjct: 240 AELVIPMFEGEHFADPDANPGEEGFADGEGASWVVAWTEDGAPVRESYVNLIPTPAGGTH 299 Query: 282 LAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLV 341 +G R + + + ++++ K V +D V+S KV DP+F Q K++L Sbjct: 300 ESGLREGLFQAVKSFIEMHALQPKG-VKLMSEDVFARASFVLSAKVLDPQFQGQIKERLN 358 Query: 342 SSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLA 401 S + V L +L + K + +I A+AR R A+++ ++KG+ +A Sbjct: 359 SRDAVRLVSTFSRPALELWLNHHVEYGKKLAELVIRQAQART--RAAQKVEKKKGS-GVA 415 Query: 402 GLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 461 LPGKL DC+ D +EL+LVEGDSAGGSAK GR+++ QAILPL+GK+LN + D++ Sbjct: 416 VLPGKLTDCESTDVTRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNTWETERDRL 475 Query: 462 LSSQEVATLITALGCGIG--RDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMP 519 ++ EV + A+G DE + LRY I I++DADVDG+HI+ LLLT F+R P Sbjct: 476 FANNEVHDIAVAIGVDPHGANDEPDLSNLRYGKICILSDADVDGAHIQVLLLTLFFRHFP 535 Query: 520 EIVERGHVYIAQPPLYKV------KKGKQEQYIKDDEAMDQYQISIALDGATLHT-NASA 572 +++E G+VY+A+PPL++V KK Q+ Y D+ ++ Q + DG ++ S Sbjct: 536 KLIETGNVYVARPPLFRVDAPARGKKPAQKLYALDEGELEAIQDKLLKDGVKENSWQISR 595 Query: 573 PALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTR--WV 630 GE + + E + + L + + + + + R W+ Sbjct: 596 FKGLGEMSAEQLWETTMNPDTRRLLPVTLGEYDLPQTV---EMMNMLMGKGEAAQRRSWL 652 Query: 631 NALVSE 636 +E Sbjct: 653 EEKGNE 658 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 81/221 (36%), Gaps = 31/221 (14%) Query: 588 NATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQW 647 +R + + ++ + +DE ++ + L+D + G+ Sbjct: 463 KVLNTWETERDRLFANNEVHDIAVAIGVDPHGANDEPDLSNLRYGKICILSDADVDGAHI 522 Query: 648 KFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFI 707 + + T F E + L + + A Sbjct: 523 QVLLLT----------------------LFFRHFPKLIETGNVYVARPPLFRV-DAPARG 559 Query: 708 ERGERRQPVASFEQALDWLVKESRRGLS-----IQRYKGLGEMNPEQLWETTMDPESRRM 762 ++ ++ + K + G+ I R+KGLGEM+ EQLWETTM+P++RR+ Sbjct: 560 KKPAQKLYALDEGELEAIQDKLLKDGVKENSWQISRFKGLGEMSAEQLWETTMNPDTRRL 619 Query: 763 LRVTVK--DAIAADQLFTTLMGD-AVEPRRAFIEENALKAA 800 L VT+ D ++ LMG RR+++EE + Sbjct: 620 LPVTLGEYDLPQTVEMMNMLMGKGEAAQRRSWLEEKGNEVE 660 >UniRef50_Q18GY2 DNA gyrase subunit B n=10 Tax=cellular organisms RepID=Q18GY2_HALWD Length = 852 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 240/432 (55%), Positives = 306/432 (70%), Gaps = 7/432 (1%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 Y + I+VL+GL+AVRKRP MYIG TD GLHH+V+EVVDNAIDEALAGHC +I VT Sbjct: 5 TEYGAGDIQVLEGLEAVRKRPAMYIGSTD-SRGLHHLVYEVVDNAIDEALAGHCDQIDVT 63 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 +H D SVSV D+GRGIP H + + A EVIMTVLHAGGKFD+ SY+VSGGLHGVGVSV Sbjct: 64 LHEDGSVSVADNGRGIPVDTHEQHDIPAVEVIMTVLHAGGKFDNKSYQVSGGLHGVGVSV 123 Query: 123 VNALSQKLELVIQREGKIHRQIYEHGVPQ----APLAVTGETEKTGTMVRFWPSLETFTN 178 VNALS+ LE+ I+R+G + R +E+G PQ + E+TGT +RFWPS + F Sbjct: 124 VNALSRWLEVEIKRDGALWRDRFEYGEPQPGAFERVRDLDPDEETGTTIRFWPSDDIF-E 182 Query: 179 VTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHP 238 TEFE+ L RLREL+FLNSGV I + + D F + GGI+ FV+YL++ KT +H Sbjct: 183 TTEFEFSTLENRLRELAFLNSGVEICINGETDDINSKFCFNGGIREFVKYLDETKTVLHD 242 Query: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 ++ ++ E+DGI VEVALQ + Q +I+ F NNI R+GGTHL GF+ A+TR +N Y Sbjct: 243 SVVHYQNEQDGIEVEVALQATEELQGSIHAFANNINTREGGTHLTGFKTALTRVINDYGR 302 Query: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 + S G+D REGL AVVS+K PDP+F QTK KL +S+V+ VE +E L Sbjct: 303 EHNLL-DGFDSLQGEDVREGLTAVVSIKHPDPQFEGQTKTKLGNSDVRGIVESTTHERLG 361 Query: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 YL ENP AK++V K ++AA+AR+AA++A E+TRRK AL+ LPGKLADCQ RDPA S Sbjct: 362 TYLEENPDVAKVIVRKAVEAAKARKAAKQAEELTRRKSALESTSLPGKLADCQSRDPAES 421 Query: 419 ELYLVEGDSAGG 430 EL++VEGDSAGG Sbjct: 422 ELFIVEGDSAGG 433 Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 76/199 (38%), Positives = 106/199 (53%), Gaps = 11/199 (5%) Query: 431 SAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRY 490 SAKQGR R+ QAILPLKGKILNVEK R D++L + EV LITA+G GIG DE+N + RY Sbjct: 649 SAKQGRERRFQAILPLKGKILNVEKHRLDRILENDEVRALITAIGAGIG-DEFNVEDARY 707 Query: 491 HSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDE 550 + +II++DADVDG+HIRTLLLT YR M +VE G+VY A+PPLY+++ Sbjct: 708 NRLIILSDADVDGAHIRTLLLTLLYRHMRPLVEAGYVYAAKPPLYRIRYNGNTYDAMTKS 767 Query: 551 AMDQYQIS-IALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKEL 609 DQ + + + E L + +N R + +++ Sbjct: 768 ERDQVISDVCNGNPTQVQRFKGLGEMNPEQL---------WETTMNPENRVLKQITIEDA 818 Query: 610 IYQPTLTEADLSDEQTVTR 628 + + D + Sbjct: 819 AAADKMFSVLMGDAVEPRK 837 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 55/156 (35%), Positives = 83/156 (53%), Gaps = 5/156 (3%) Query: 652 HTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIE-RG 710 N E + ++ + VD + + YR + L E + R Sbjct: 699 EFNVEDARYNRLIILSDADVDGAHI--RTLLLTLLYRHMRPLVEAGYVYAAKPPLYRIRY 756 Query: 711 ERRQPVASFEQALDWLVKESRRG--LSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVK 768 A + D ++ + G +QR+KGLGEMNPEQLWETTM+PE+R + ++T++ Sbjct: 757 NGNTYDAMTKSERDQVISDVCNGNPTQVQRFKGLGEMNPEQLWETTMNPENRVLKQITIE 816 Query: 769 DAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 DA AAD++F+ LMGDAVEPR+ FI++ A A +DI Sbjct: 817 DAAAADKMFSVLMGDAVEPRKEFIKDRATDAEWVDI 852 >UniRef50_Q9X3Y5 DNA gyrase subunit B (Fragment) n=740 Tax=cellular organisms RepID=GYRB_BACMY Length = 404 Score = 511 bits (1315), Expect = e-143, Method: Composition-based stats. Identities = 236/405 (58%), Positives = 301/405 (74%), Gaps = 2/405 (0%) Query: 99 HAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTG 158 HAGGKFD YKVSGGLHGVG SVVNALS +LE+ + R+GKIH Q YE GVP A L V G Sbjct: 1 HAGGKFDGGGYKVSGGLHGVGASVVNALSTELEVFVHRDGKIHYQKYERGVPAADLRVIG 60 Query: 159 ETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDG-KEDHFH 217 ET++TGT+ RF P E FT TE+E++ LA R+REL+FLN + + + DKR+ ++ FH Sbjct: 61 ETDRTGTITRFKPDSEIFTETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFH 120 Query: 218 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRD 277 YEGGIK++VE+LN++K PIH Y KDGI VEVALQ+N+G+ +IY FTNNI + Sbjct: 121 YEGGIKSYVEHLNRSKQPIHEEPVYVDGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYE 180 Query: 278 GGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTK 337 GGTH GF+ A+TR +N Y K K A + TG+D REGL A+VS+K P+P+F QTK Sbjct: 181 GGTHEVGFKTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTK 240 Query: 338 DKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGA 397 KL +SE ++ E +E ++LLENP A+ ++ K AARAR AA++ARE+TRRK A Sbjct: 241 TKLGNSEARTITESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSA 300 Query: 398 LDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 457 L+++ LPGKLADC +DPA+SE+Y+VEGDSAGGSAKQGR+R QAILPLKGKI+NVEKAR Sbjct: 301 LEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKAR 360 Query: 458 FDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVD 502 DK+LS+ EV T+ITA+G IG D + +K RYH +IIMTDADVD Sbjct: 361 LDKILSNDEVRTIITAIGTNIGGD-FAIEKARYHKVIIMTDADVD 404 >UniRef50_P77966 Ssp gyrB intein n=45 Tax=cellular organisms RepID=GYRB_SYNY3 Length = 1078 Score = 503 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 229/433 (52%), Positives = 296/433 (68%), Gaps = 5/433 (1%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 + +Y + I+VL+GL+ VRKRPGMYIG T GLHH+V+EVVDNAIDEALAG+C I + Sbjct: 5 TTNYGADQIQVLEGLEPVRKRPGMYIGSTG-PKGLHHLVYEVVDNAIDEALAGYCTHIEI 63 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 I+AD SV+V D+GRGIPT IHP G SA E ++TVLHAGGKF YKVSGGLHGVGVS Sbjct: 64 DINADGSVTVVDNGRGIPTDIHPTTGRSALETVLTVLHAGGKFGGGGYKVSGGLHGVGVS 123 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLA-VTGETEKTGTMVRFWPSLETFTNVT 180 VVNALS+ +E+ + R+GK H Q +E G P L E TGT V F P + F + Sbjct: 124 VVNALSEWVEVKVWRQGKEHFQRFERGNPIGTLEATPNEGHSTGTQVSFLPDTQIFKDGI 183 Query: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDG--KEDHFHYEGGIKAFVEYLNKNKTPIHP 238 EF+Y LA RL+EL++LN+GV I D+R KE+ F+YEGGI+ +V Y+ +KTP+H Sbjct: 184 EFDYHTLASRLKELAYLNAGVRITFGDRRADSLKEEQFYYEGGIREYVTYMTTDKTPLHE 243 Query: 239 NIFYFSTEKDGIGVEVALQWN-DGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYM 297 I Y S EK+ + VEVALQW D + + + F NNI DGGTHL G +A +TRTLN+ Sbjct: 244 EIIYTSGEKNDVQVEVALQWCVDAYSDTLLGFANNIRTIDGGTHLEGLKAVLTRTLNSVA 303 Query: 298 DKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELL 357 K K + G++ REGL V+SVKVPDP+F QTK KL ++EV+ V+ + E L Sbjct: 304 RKRNKLKDGDSNLGGENIREGLTGVISVKVPDPEFEGQTKTKLGNTEVRGIVDTLVGEAL 363 Query: 358 AEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPAL 417 E+L NP A ++ K + A +A EAARRARE+ RRK L+ + LPGKLADC +DP+ Sbjct: 364 TEFLEFNPGVADAIIEKAVQAFKAAEAARRARELVRRKSVLESSTLPGKLADCSSKDPSE 423 Query: 418 SELYLVEGDSAGG 430 SE+++VEGDSAGG Sbjct: 424 SEIFIVEGDSAGG 436 Score = 212 bits (539), Expect = 6e-53, Method: Composition-based stats. Identities = 76/198 (38%), Positives = 111/198 (56%), Gaps = 8/198 (4%) Query: 431 SAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRY 490 SAKQGR+R+ QAILPL+GKILN+EK K+ + E+ LITALG GI D+++ LRY Sbjct: 872 SAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITALGLGIKGDDFDISSLRY 931 Query: 491 HSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDE 550 H ++IMTDADVDG+HIRTLLLTFFYR ++V++G++YIA PPLYK+++GK Y D Sbjct: 932 HRVVIMTDADVDGAHIRTLLLTFFYRYQRDLVDQGYIYIACPPLYKLERGKNHFYCYSDR 991 Query: 551 AMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELI 610 + + + + GE + + +N R + +++ Sbjct: 992 ELQEQISQFPPNA---NYTIQRFKGLGEMMPQ-----QLWDTTMNPESRTMKRVHIEDAA 1043 Query: 611 YQPTLTEADLSDEQTVTR 628 + + D R Sbjct: 1044 EADRIFTVLMGDRVAPRR 1061 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 71/304 (23%), Positives = 125/304 (41%), Gaps = 33/304 (10%) Query: 522 VERGHVYIAQPPLYKVKKGKQ---------EQYIKDDEAM---------DQYQISIALDG 563 +E G++ I+ Y++ + E+Y ++DE + + A+ Sbjct: 787 IENGYLDISAYDSYRISTKDKSLLRFDRFCERYFENDENLAREAVLNYNHRIVNIEAVSE 846 Query: 564 ATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDE 623 + P AL V +N+ ++ +R + + +++ +A + Sbjct: 847 TIDVYDIEVPHTHNFALASGVFVHNSAKQGRDRR-FQAILPLRGKILNIEKTDDAKIYKN 905 Query: 624 QTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFIT 683 + + AL + + S ++ +V + VD + Sbjct: 906 TEIQALITALGLGIKGDDFDISSLRYH-----------RVVIMTDADVDGAHIRTLLLTF 954 Query: 684 GGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKES-RRGLSIQRYKGL 742 Y+R + +ERG+ S + + + + +IQR+KGL Sbjct: 955 FYRYQRDLVDQGYIYIACPPLYKLERGKNHFYCYSDRELQEQISQFPPNANYTIQRFKGL 1014 Query: 743 GEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENA--LKAA 800 GEM P+QLW+TTM+PESR M RV ++DA AD++FT LMGD V PRR FIE L Sbjct: 1015 GEMMPQQLWDTTMNPESRTMKRVHIEDAAEADRIFTVLMGDRVAPRREFIETYGTKLDLT 1074 Query: 801 NIDI 804 ++DI Sbjct: 1075 DLDI 1078 >UniRef50_Q02880 DNA topoisomerase 2-beta n=175 Tax=Eukaryota RepID=TOP2B_HUMAN Length = 1626 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 145/700 (20%), Positives = 266/700 (38%), Gaps = 73/700 (10%) Query: 10 IKVLKGLDAVRKRPGMYIGDTD---------------------DGTGLHHMVFEVVDNAI 48 + L+ + RP YIG + GL+ + E++ NA Sbjct: 55 YQKKTQLEHILLRPDTYIGSVEPLTQFMWVYDEDVGMNCREVTFVPGLYKIFDEILVNAA 114 Query: 49 DEALAGH-CKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDD 106 D I V+I + N +S+ ++G+GIP H E V +I L +DD Sbjct: 115 DNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDD 174 Query: 107 NSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIH--RQIYEHGVPQAPLAVTGETE-KT 163 + KV+GG +G G + N S K + + H +Q + + + + A + + Sbjct: 175 DEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGED 234 Query: 164 GTMVRFWPSLETFT--NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGG 221 T + F P L F + + ++ +R +L+ GV + K+ G Sbjct: 235 YTCITFQPDLSKFKMEKLDKDIVALMTRRAYDLAGSCRGVKVMFNGKKLPV-------NG 287 Query: 222 IKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTH 281 +++V+ K+K E +V L ++ + I F N+I GG H Sbjct: 288 FRSYVDLYVKDKLDETGVALKVIHELANERWDVCLTLSEKGFQQI-SFVNSIATTKGGRH 346 Query: 282 LAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLV 341 + + L + K+ KA VS + + ++ + +P F SQTK+ + Sbjct: 347 VDYVVDQVVGKLIEVVKKKN---KAGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMT 403 Query: 342 SSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLA 401 + Q++E + I+++ + ++ ++ ++ + Sbjct: 404 LQPKSFGSKCQLSEKFFK---------AASNCGIVESILNWVKFKAQTQLNKKCSSVKYS 454 Query: 402 GLPG--KLADCQE---RDPALSELYLVEGDSAGGSAKQGRN---RKNQAILPLKGKILNV 453 + G KL D + + L L EGDSA A G R + PL+GKILNV Sbjct: 455 KIKGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNV 514 Query: 454 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKL---RYHSIIIMTDADVDGSHIRTLL 510 +A +++ + E+ +I +G + + + L RY I+IMTD D DGSHI+ LL Sbjct: 515 REASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLL 574 Query: 511 LTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNA 570 + F + P +++ G + P+ K K KQE D+++ I A Sbjct: 575 INFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYY 634 Query: 571 SAPALAGEALEKLVSEYNATQ---KMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVT 627 G + K EY A +++ R A + + + + Sbjct: 635 KG---LGTSTAKEAKEYFADMERHRILFRYAGPEDDAAITLAFSKKKIDDR--------K 683 Query: 628 RWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVR 667 W+ + + + HG +F T + + + Sbjct: 684 EWLTNFMEDRRQRRLHGLPEQFLYGTATKHLTYNDFINKE 723 >UniRef50_O24308 DNA topoisomerase 2 n=3 Tax=fabids RepID=TOP2_PEA Length = 1462 Score = 496 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 132/595 (22%), Positives = 242/595 (40%), Gaps = 56/595 (9%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTDDGT--------------------GLHHMVFEVVDN 46 + L+ + RP Y+G + T GL+ + E++ N Sbjct: 20 EEMYQKKTQLEHILLRPDTYVGSIEKHTQNLWVYENDEMVHRAVSYVPGLYKIFDEILVN 79 Query: 47 AIDEALAGH-CKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKF 104 A D + VTI + N+VSV ++G G+P IH EE V E+I L + Sbjct: 80 AADNKQRDPSMDSLKVTIDPEANTVSVYNNGDGVPVEIHQEEKVYVPELIFGHLLTSSNY 139 Query: 105 DDNSYKVSGGLHGVGVSVVNALSQKL--ELVIQREGKIHRQIYEHGVPQA--PLAVTGET 160 DDN K +GG +G G + N S + E R K ++Q++ + + P+ + Sbjct: 140 DDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGRRLKKYKQVFSNNMGTKCEPVITKCKA 199 Query: 161 EKTGTMVRFWPSLETFTN--VTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHY 218 + T V F P LE F + E ++ KR+ +++ ++ + +G F Sbjct: 200 SENWTKVTFKPDLEKFKMAYLEEDVVALMKKRVLDMAGCFGK---TVKVELNGTLIRFKS 256 Query: 219 EGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDG 278 + + + K P K G E+ + +DG Q F N+I G Sbjct: 257 ---FRDYADLFLKCAEKSKPMPLPRIHAKVGDRWEICISLSDG-QFQQVSFVNSIATIKG 312 Query: 279 GTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKD 338 GTH+ +T + ++K KK + + L V+ + +P F SQTK+ Sbjct: 313 GTHVDYITNQITTYIMNKVNK----KKKDANVKAHTVKNHLWVFVNSLIDNPAFDSQTKE 368 Query: 339 KLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGAL 398 L + + + + E + + + ++ I+D + ++++++ + G Sbjct: 369 TLTTRQASFGSKCDVPESMLKDVEKS---------GIVDTLLSWADFKQSKDLKKTDGTK 419 Query: 399 DLAGLPGKLADCQE---RDPALSELYLVEGDSAGGSAKQGRN---RKNQAILPLKGKILN 452 K D E R+ L L EGDSA A G + R + + PL+GK+LN Sbjct: 420 TQRLRGCKAEDANEAGGRNSEKCTLILTEGDSAKALAMAGLSVVGRDHYGVFPLRGKLLN 479 Query: 453 VEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLT 512 V +A +++ ++E+ + LG ++ N LRY ++IM D D DGSHI+ LL+ Sbjct: 480 VREASSKQIMDNEEIQNIKKILGLQQNKEYTNVKSLRYGHLMIMADQDHDGSHIKGLLIN 539 Query: 513 FFYRQMPEIVERG-HVYIAQPPLYKVKKGKQEQY-IKDDEAMDQYQISIALDGAT 565 F + P +++ + P+ + + + ++ + + Sbjct: 540 FIHSFWPSLLKVPSFLVEFTTPVIRASHPNKTITSFYSMPEYEAWKERLGNSATS 594 >UniRef50_Q44272 DNA gyrase subunit B (Fragment) n=2942 Tax=cellular organisms RepID=GYRB_ACIG9 Length = 390 Score = 496 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 293/392 (74%), Positives = 331/392 (84%), Gaps = 4/392 (1%) Query: 106 DNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGT 165 DNSYKVSGGLHGVGVSVVNALS+KLEL I R GKIH Q Y HG Q PL V G+T +TGT Sbjct: 1 DNSYKVSGGLHGVGVSVVNALSEKLELTIHRAGKIHEQEYRHGDSQYPLKVVGDTNRTGT 60 Query: 166 MVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAF 225 VRFWPS ETF+ T F +ILA+RLRELSFLN+GV I LRD+R E F YEGG+ F Sbjct: 61 RVRFWPSAETFSQ-TIFNVDILARRLRELSFLNAGVRIVLRDERINAEHVFDYEGGLSEF 119 Query: 226 VEYLNKNKTPIHPNIFYFSTE--KDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLA 283 V+Y+N+ KT ++ +IF+F+ +GI VEVALQWND +QEN+ CFTNNIPQ+DGGTHLA Sbjct: 120 VKYINEGKTHLN-DIFHFTAAQADNGITVEVALQWNDSYQENVRCFTNNIPQKDGGTHLA 178 Query: 284 GFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSS 343 GFRAA+TR LN YMD E KK KV+ +GDDAREGL A+VSVKVPDPKFSSQTK+KLVSS Sbjct: 179 GFRAALTRGLNNYMDSENILKKEKVAVSGDDAREGLTAIVSVKVPDPKFSSQTKEKLVSS 238 Query: 344 EVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGL 403 EVK+AVEQ MN+ +EYLLENP AK + GKIIDAARAR+AAR+AREMTRRK ALD+AGL Sbjct: 239 EVKTAVEQAMNKAFSEYLLENPQAAKAIAGKIIDAARARDAARKAREMTRRKSALDIAGL 298 Query: 404 PGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLS 463 PGKLADCQE+DPALSELYLVEGDSAGGSAKQGRNRK QAILPLKGKILNVE+ARFD+M+S Sbjct: 299 PGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDRMIS 358 Query: 464 SQEVATLITALGCGIGRDEYNPDKLRYHSIII 495 S EV TLITALGCGIGR+EYNPDKLRYH III Sbjct: 359 SAEVGTLITALGCGIGREEYNPDKLRYHKIII 390 >UniRef50_Q10XN8 DNA gyrase subunit B n=6 Tax=Bacteria RepID=Q10XN8_TRIEI Length = 891 Score = 495 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 225/438 (51%), Positives = 293/438 (66%), Gaps = 10/438 (2%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 SN+Y + I+VL+GL+AVRKRPGMYIG T GLHH+V+EVVDN+IDEALAG+C I V Sbjct: 3 SNNYGAEQIQVLEGLEAVRKRPGMYIGTTG-PRGLHHLVYEVVDNSIDEALAGYCTHIEV 61 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 ++ D SV V DDGRGIP H + G SA E +MTVLHAGGKF YKVSGGLHGVGVS Sbjct: 62 DLNKDGSVKVTDDGRGIPVDTHSKTGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVGVS 121 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLA-VTGETEKTGTMVRFWPSLETFTNVT 180 VVNALS+ +E+ + R+ K H Q YE G P L + ++TGT V+F P E FT Sbjct: 122 VVNALSEWVEVTVWRDKKTHIQGYERGQPTGDLKSKPNKEKRTGTSVQFLPDQEIFTTGI 181 Query: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKR-------DGKEDHFHYEGGIKAFVEYLNKNK 233 +F+Y + RLREL++LN+GV I + D R + K + + YEGGIK +V Y+N+ K Sbjct: 182 QFDYNTIIGRLRELAYLNAGVKITITDNRLELVKSDEPKVESYCYEGGIKEYVTYMNREK 241 Query: 234 TPIHPNIFYFSTEKDGIGVEVALQWN-DGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRT 292 +H + + EK+ + VEVALQW D F +N+ F NNI DGGTHL G + +TRT Sbjct: 242 QSLHEEVIFVRGEKNDVQVEVALQWCIDAFSDNVLGFANNIRTIDGGTHLEGLKTVLTRT 301 Query: 293 LNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQ 352 +N K K + + G++ REGL AV+SVKVP+P+F QTK KL ++EV+ V+ Sbjct: 302 MNGIARKRNKLKDSDPNLGGENVREGLTAVISVKVPEPEFEGQTKTKLGNTEVRGIVDSL 361 Query: 353 MNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQE 412 + E+L+EYL NP A V+ K I A +A EAARRAR++ RRK L+ + LPGKLADC Sbjct: 362 VGEVLSEYLDFNPQVADAVLDKAIQAFKAAEAARRARDLVRRKSVLESSPLPGKLADCST 421 Query: 413 RDPALSELYLVEGDSAGG 430 ++P SE+YLVEGDSA G Sbjct: 422 KNPEESEIYLVEGDSASG 439 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 79/198 (39%), Positives = 113/198 (57%), Gaps = 7/198 (3%) Query: 431 SAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRY 490 SAKQGR+R+ QAILPL+GKI+N+EK K+ + E+ ++ITALG GI DE++ +LRY Sbjct: 684 SAKQGRDRRFQAILPLRGKIINIEKTDDAKIYKNNEIQSMITALGLGIKGDEFDASQLRY 743 Query: 491 HSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDE 550 H +IIMTDADVDGSHIRTLLLTFFYR +V++G++YIA PPLYKV++G+ Y D Sbjct: 744 HKVIIMTDADVDGSHIRTLLLTFFYRYQRALVDQGYIYIACPPLYKVERGRNHYYCYSDR 803 Query: 551 AMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELI 610 +++ + D A GE + +N R + +++ Sbjct: 804 ELNELIQNEFPDNANY--TIQRFKGLGEMMP-----VQLWDTTMNPETRTLKRVEIEDAA 856 Query: 611 YQPTLTEADLSDEQTVTR 628 + + D R Sbjct: 857 EADRIFTVLMGDRVAPRR 874 Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats. Identities = 65/241 (26%), Positives = 106/241 (43%), Gaps = 18/241 (7%) Query: 569 NASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTR 628 + P AL V +N+ ++ +R + + ++I +A + + Sbjct: 664 DIEVPNTHNFALASGVFVHNSAKQGRDRR-FQAILPLRGKIINIEKTDDAKIYKNNEIQS 722 Query: 629 WVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYR 688 + AL + E SQ ++ ++ + VD + Y+ Sbjct: 723 MITALGLGIKGDEFDASQLRYH-----------KVIIMTDADVDGSHIRTLLLTFFYRYQ 771 Query: 689 RICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKE---SRRGLSIQRYKGLGEM 745 R + +ERG R ++ L+ L++ +IQR+KGLGEM Sbjct: 772 RALVDQGYIYIACPPLYKVERG-RNHYYCYSDRELNELIQNEFPDNANYTIQRFKGLGEM 830 Query: 746 NPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENA--LKAANID 803 P QLW+TTM+PE+R + RV ++DA AD++FT LMGD V PRR FIE LK ++D Sbjct: 831 MPVQLWDTTMNPETRTLKRVEIEDAAEADRIFTVLMGDRVAPRREFIETYGPKLKITDLD 890 Query: 804 I 804 I Sbjct: 891 I 891 >UniRef50_P11388 DNA topoisomerase 2-alpha n=47 Tax=Eukaryota RepID=TOP2A_HUMAN Length = 1531 Score = 495 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 139/622 (22%), Positives = 247/622 (39%), Gaps = 62/622 (9%) Query: 10 IKVLKGLDAVRKRPGMYIGDTD---------------------DGTGLHHMVFEVVDNAI 48 + L+ + RP YIG + GL+ + E++ NA Sbjct: 34 YQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINYREVTFVPGLYKIFDEILVNAA 93 Query: 49 DEALAGH-CKEIIVTIHADNS-VSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDD 106 D I VTI +N+ +S+ ++G+GIP H E + +I L +DD Sbjct: 94 DNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDD 153 Query: 107 NSYKVSGGLHGVGVSVVNALSQKLELVIQRE--GKIHRQIYEHGVPQA-PLAVTGETEKT 163 + KV+GG +G G + N S K + K+ +Q + + +A + + + Sbjct: 154 DEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGEMELKPFNGED 213 Query: 164 GTMVRFWPSLETFT--NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGG 221 T + F P L F ++ + ++ +R +++ V + L + + G Sbjct: 214 YTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGSTKDVKVFLNGNKLPVK-------G 266 Query: 222 IKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTH 281 +++V+ K+K N E+ EV L ++ + I F N+I GG H Sbjct: 267 FRSYVDMYLKDKLDETGNSLKVIHEQVNHRWEVCLTMSEKGFQQI-SFVNSIATSKGGRH 325 Query: 282 LAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLV 341 + + L + K+ K V+ + + V+ + +P F SQTK+ + Sbjct: 326 VDYVADQIVTKLVDVVKKKN---KGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMT 382 Query: 342 SSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLA 401 Q++E + + I+++ + ++ ++ A+ Sbjct: 383 LQPKSFGSTCQLSEKFIK---------AAIGCGIVESILNWVKFKAQVQLNKKCSAVKHN 433 Query: 402 GLPG--KLADCQE---RDPALSELYLVEGDSAGGSAKQGRN---RKNQAILPLKGKILNV 453 + G KL D + R+ L L EGDSA A G R + PL+GKILNV Sbjct: 434 RIKGIPKLDDANDAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNV 493 Query: 454 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKL---RYHSIIIMTDADVDGSHIRTLL 510 +A +++ + E+ +I +G ++ + D L RY I+IMTD D DGSHI+ LL Sbjct: 494 REASHKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLL 553 Query: 511 LTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNA 570 + F + P ++ + P+ KV K KQE ++++ S Sbjct: 554 INFIHHNWPSLLRHRFLEEFITPIVKVSKNKQEMAFYSLPEFEEWKSSTPNHKKWKVKYY 613 Query: 571 SAPALAGEALEKLVSEYNATQK 592 G + K EY A K Sbjct: 614 KG---LGTSTSKEAKEYFADMK 632 >UniRef50_UPI0000DA3D74 PREDICTED: similar to topoisomerase (DNA) II beta n=1 Tax=Rattus norvegicus RepID=UPI0000DA3D74 Length = 1445 Score = 494 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 145/700 (20%), Positives = 266/700 (38%), Gaps = 73/700 (10%) Query: 10 IKVLKGLDAVRKRPGMYIGDTD---------------------DGTGLHHMVFEVVDNAI 48 + L+ + RP YIG + GL+ + E++ NA Sbjct: 43 YQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVGMNCREVTFVPGLYKIFDEILVNAA 102 Query: 49 DEALAGH-CKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDD 106 D I V+I + N +S+ ++G+GIP H E V +I L +DD Sbjct: 103 DNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDD 162 Query: 107 NSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIH--RQIYEHGVPQAPLAVTGETE-KT 163 + KV+GG +G G + N S K + + H +Q + + + + A + + Sbjct: 163 DEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGED 222 Query: 164 GTMVRFWPSLETFT--NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGG 221 T + F P L F + + ++ +R +L+ GV + K+ G Sbjct: 223 YTCITFQPDLAKFKMEKLDKDIVALMTRRAYDLAGSCKGVKVMFNGKKLPV-------NG 275 Query: 222 IKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTH 281 +++V+ K+K E +V L ++ + I F N+I GG H Sbjct: 276 FRSYVDLYVKDKLDETGVALKVIHELANERWDVCLTLSEKGFQQI-SFVNSIATTKGGRH 334 Query: 282 LAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLV 341 + + L + K+ KA VS + + ++ + +P F SQTK+ + Sbjct: 335 VDYVVDQVVGKLIEVVKKKN---KAGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMT 391 Query: 342 SSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLA 401 + Q++E + I+++ + ++ ++ ++ + Sbjct: 392 LQPKSFGSKCQLSEKFFK---------AASNCGIVESILNWVKFKAQTQLNKKCSSVKYS 442 Query: 402 GLPG--KLADCQE---RDPALSELYLVEGDSAGGSAKQGRN---RKNQAILPLKGKILNV 453 + G KL D + + L L EGDSA A G R + PL+GKILNV Sbjct: 443 KIKGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNV 502 Query: 454 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKL---RYHSIIIMTDADVDGSHIRTLL 510 +A +++ + E+ +I +G + + + L RY I+IMTD D DGSHI+ LL Sbjct: 503 REASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLL 562 Query: 511 LTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNA 570 + F + P +++ G + P+ K K KQE D+++ I A Sbjct: 563 INFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYY 622 Query: 571 SAPALAGEALEKLVSEYNATQ---KMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVT 627 G + K EY A +++ R A + + + + Sbjct: 623 KG---LGTSTAKEAKEYFADMERHRILFRYAGPEDDAAITLAFSKKKIDDR--------K 671 Query: 628 RWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVR 667 W+ + + + HG +F T + + + Sbjct: 672 EWLTNFMEDRRQRRLHGLPEQFLYGTATKHLTYNDFINKE 711 >UniRef50_B6K4K4 DNA topoisomerase 2 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K4K4_SCHJY Length = 1499 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 137/597 (22%), Positives = 256/597 (42%), Gaps = 57/597 (9%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTDDG----------------------TGLHHMVFEVV 44 S + + + V +RP YIG + GL+ + E++ Sbjct: 71 SQQYQRISPREHVLRRPDTYIGSVEKTEMPMWVYDSEQNKMVYKEVNIVPGLYKIFDEII 130 Query: 45 DNAIDEALAGH-CKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGG 102 NA D + + V I + N +SV ++G+GIP IH +EG+ E+I L Sbjct: 131 VNAADNKVRDPTMNTLKVEIDPEANVISVYNNGKGIPVEIHEKEGIYIPELIFGHLLTSS 190 Query: 103 KFDDNSYKVSGGLHGVGVSVVNALSQKLELV--IQREGKIHRQIYEHGVPQA--PLAVTG 158 +DDN KV+GG +G G + N S + + + K ++Q + + + P V Sbjct: 191 NYDDNQKKVTGGRNGYGAKLCNIFSHEFTVETADKLRMKKYKQTWTENMSKKSEPKVVDM 250 Query: 159 ETEKTGTMVRFWPSLET--FTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHF 216 + T + F P L T + + ++ +R+ +++ + + L ++R ++ Sbjct: 251 KRADEYTKITFKPDLAKFGMTKLDDDLVSVVKRRVYDMAGTIPDIKVFLNNERINIKNFR 310 Query: 217 HYEGGIKAFVEYL-NKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQ 275 Y ++ FV L N+ + P I Y ++ EVA +DG Q F N+I Sbjct: 311 KY---VELFVSSLRNRTDSTKPPTILY---DRPNERWEVAYTLSDG-QFKNISFVNSIAT 363 Query: 276 RDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQ 335 GGTH+ + + + A K+ + + L ++ ++ +P F SQ Sbjct: 364 TRGGTHVNYVADEIVKRVQAEFSKKNK----HAALKPFQIKNNLWLFINCQIVNPSFDSQ 419 Query: 336 TKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRK 395 TK+ L + + +++ + L+++ A + + A+ A + T K Sbjct: 420 TKETLTTKPSAFGSKCDLSDTFFKQLIKSEIIA-------VCSELAKAKADQQMSKTDGK 472 Query: 396 GALDLAGLPGKLADCQE---RDPALSELYLVEGDSAGGSAKQGRN---RKNQAILPLKGK 449 + GLP KL+D + R+ L L EGDSA G R + PL+GK Sbjct: 473 SRSRITGLP-KLSDANKAGTRESKKCTLILTEGDSAKTLVVSGLGVVGRDYYGVYPLRGK 531 Query: 450 ILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTL 509 +LNV +A ++++++++E+ + LG + + D LRY ++IMTD D DGSHI+ L Sbjct: 532 LLNVREASYNQIINNKEIQAIKKILGLAHNKKYTSTDGLRYGHLMIMTDQDHDGSHIKGL 591 Query: 510 LLTFFYRQMPEIVE-RGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGAT 565 ++ + P ++ G + P+ + +KG++ D ++ + Sbjct: 592 IINYLESTYPSLLHLEGFLIEFITPIVRCRKGREIISFFTLPEFDYWKENNNNGRGW 648 >UniRef50_P08096 DNA topoisomerase 2 n=1 Tax=Schizosaccharomyces pombe RepID=TOP2_SCHPO Length = 1485 Score = 490 bits (1262), Expect = e-137, Method: Composition-based stats. Identities = 135/639 (21%), Positives = 259/639 (40%), Gaps = 61/639 (9%) Query: 8 SSIKVLKGLDAVRKRPGMYIGDTDDGT----------------------GLHHMVFEVVD 45 + + L + V +RP YIG + T GL+ + E++ Sbjct: 76 TQYQRLTPREHVLRRPDTYIGSIEPTTSEMWVFDSEKNKLDYKAVTYVPGLYKIFDEIIV 135 Query: 46 NAIDEALAGH-CKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGK 103 NA D + + VT+ + N +S+ ++G+GIP IH +E + E+I L Sbjct: 136 NAADNKVRDPNMNTLKVTLDPEANVISIYNNGKGIPIEIHDKEKIYIPELIFGNLLTSSN 195 Query: 104 FDDNSYKVSGGLHGVGVSVVNALSQKL--ELVIQREGKIHRQIYEHGVPQA--PLAVTGE 159 +DDN KV+GG +G G + N S + E + K ++Q + + + P+ + + Sbjct: 196 YDDNQKKVTGGRNGYGAKLCNIFSTEFVVETADKERMKKYKQTWYDNMSRKSEPVITSLK 255 Query: 160 TEKTGTMVRFWPSLETFT--NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFH 217 T + F P L F + + I+ +R+ +++ + L ++R Sbjct: 256 KPDEYTKITFKPDLAKFGMDKIDDDMVSIIKRRIYDMAGTVRETKVYLNNERISI----- 310 Query: 218 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRD 277 G K +VE + T E +VA +DG Q F NNI Sbjct: 311 --SGFKKYVEMYLASDTKPDEEPPRVIYEHVNDRWDVAFAVSDG-QFKQVSFVNNISTIR 367 Query: 278 GGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTK 337 GGTH+ + ++ + KE K + + V+ ++ +P F SQTK Sbjct: 368 GGTHVNYVANKIVDAIDEVVKKENK----KAPVKAFQIKNYVQVFVNCQIENPSFDSQTK 423 Query: 338 DKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGA 397 + L + + +++ + I +++ A+ +++++ G Sbjct: 424 ETLTTKVSAFGSQCTLSDKFLK---------AIKKSSVVEEVLKFATAKADQQLSKGDGG 474 Query: 398 LDLAGLP-GKLADCQE---RDPALSELYLVEGDSAGGSAKQGRN---RKNQAILPLKGKI 450 L KL D + ++ L L EGDSA A G + R + PL+GK+ Sbjct: 475 LRSRITGLTKLEDANKAGTKESHKCVLILTEGDSAKSLAVSGLSVVGRDYYGVFPLRGKL 534 Query: 451 LNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLL 510 LNV +A ++L+++E+ + +G + + LRY ++IMTD D DGSHI+ L+ Sbjct: 535 LNVREASHSQILNNKEIQAIKKIMGFTHKKTYTDVKGLRYGHLMIMTDQDHDGSHIKGLI 594 Query: 511 LTFFYRQMPEIVE-RGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQ-ISIALDGATLHT 568 + + P +++ G + P+ K +G Q Q + ++ + G + Sbjct: 595 INYLESSYPSLLQIPGFLIQFITPIIKCTRGNQVQAFYTLPEYEYWKEANNNGRGWKIKY 654 Query: 569 NASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLK 607 + ++ S+ + K + M+ + +++ Sbjct: 655 YKGLGTSDHDDMKSYFSDLDRHMKYFHAMQEK-DAELIE 692 >UniRef50_Q4UIX0 DNA topoisomerase II, putative n=2 Tax=Theileria RepID=Q4UIX0_THEAN Length = 922 Score = 487 bits (1255), Expect = e-136, Method: Composition-based stats. Identities = 231/658 (35%), Positives = 338/658 (51%), Gaps = 113/658 (17%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 + Y S I VL+GL+AVRKRPGMYIG+T + G+H +++EV+DN++DE LAG C I V Sbjct: 103 TGEYSSDDIIVLEGLNAVRKRPGMYIGNTGE-RGVHQLLYEVLDNSVDEYLAGFCNRITV 161 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDD--------------- 106 ++ D SV V D+GRGIP I P+ G S E ++TVLH+GGKF D Sbjct: 162 SLMKDGSVEVSDNGRGIPCDISPKTGKSGLETVLTVLHSGGKFQDIFPPNSTSMSSEDQN 221 Query: 107 ---------------NSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQ 151 Y+ S GLHGVG+SVVNALS+ L + + + K + G Sbjct: 222 DLKSRKKGEKEHEEKKVYEYSSGLHGVGLSVVNALSELLIVDVYKGPKSYHIELSKGNIV 281 Query: 152 APLAVTGETEKT----------GTMVRFWPSLETF------------------------- 176 PLA E E T GT +RF P + Sbjct: 282 KPLAEFSEPETTEKSNNNLKRYGTTIRFLPDYKNIFKTHHQHTETEKEEDYDTTTNKSGL 341 Query: 177 -----TNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYE------GGIKAF 225 F E++ R +ELS+LN G+SI+L D R E++ +E GG ++F Sbjct: 342 DTKCSGCKNGFILELIKTRAKELSYLNPGLSIKLVDYRITDENNEPWEETYRNTGGTRSF 401 Query: 226 VEYLNKNKTPIHPNI--FYFSTEKDGIGVEVALQWN-DGFQENIYCFTNNIPQRDGGTHL 282 +E L K+KTP++ I I VEV+ W+ + + I + NN+ GTH+ Sbjct: 402 LEELIKDKTPLYKPISYITIKGVISNINVEVSFSWSLESYTALIKGYANNVSTIA-GTHI 460 Query: 283 AGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 342 GF+ ++TR +N + K GY K G+ REG+ AV+SVK+ +F QTK KL + Sbjct: 461 DGFKISITRCVNGLLKKYGYFKGNVKPLNGEFIREGMTAVISVKLTGAEFDGQTKTKLGN 520 Query: 343 SEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAG 402 + VK+ E+ +NE L N + K A +A +AAR A+++ R+K + ++ Sbjct: 521 ALVKTVTEKIVNEQFTNILENNKELLLAIHNKSQAAKKAFDAARTAKDLIRQKSSSIVSN 580 Query: 403 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD-KM 461 + GKL +C +EL++VEG+SA G+AKQ RNR+ QA+LPLKGKILN+EK + K+ Sbjct: 581 ISGKLTECSSSKVENNELFIVEGESAAGNAKQARNRQFQAVLPLKGKILNIEKITDNSKV 640 Query: 462 LSSQEVATLITALGCGIGRDEY-------------------------------NPDKLRY 490 L +Q++ L+ ++G I + + KLRY Sbjct: 641 LENQQIQLLMNSIGISINPVTWRQNDLTEGTHMAMDRFIEMNSSKLTRKQIWLDLSKLRY 700 Query: 491 HSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKD 548 II++TDADVDGSH+++LLL YR P + G VY+A PPLY++ + ++YI Sbjct: 701 GKIILLTDADVDGSHLKSLLLCLLYRLCPSLYLHGRVYVASPPLYRITNLRNKKYIYS 758 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 4/112 (3%) Query: 695 EKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETT 754 E++ E + I + E+ + + ++ ++ + L IQR+KGLGEM QLWETT Sbjct: 813 EEIELKTELGSNITKDEKSDELDLYN--INKSFSKNNKHLIIQRFKGLGEMMANQLWETT 870 Query: 755 MDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEEN--ALKAANIDI 804 MDP+ R + R+ V ++ LMG V+ R+ +I N A ++DI Sbjct: 871 MDPKKRILKRIVVSQEPEISEIIRLLMGSDVQSRKQYIFNNSGAFNLEDLDI 922 >UniRef50_A8S818 Putative uncharacterized protein n=6 Tax=Bacteria RepID=A8S818_9FIRM Length = 699 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 184/652 (28%), Positives = 311/652 (47%), Gaps = 44/652 (6%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Y + SI LKG D VRKRP + G D G H +FE+V N+IDEA GH I V Sbjct: 40 KQEYGNESITSLKGADRVRKRPAVIFGS-DGVEGCAHSIFEIVSNSIDEARDGHGDTINV 98 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDD--NSYKVSGGLHGVG 119 T D SV V+D GRG+P + EG E++ ++AGGK+ + ++Y+ S GL+G+G Sbjct: 99 TRCKDGSVIVEDFGRGMPVDWNNGEGRFNWELLFCEMYAGGKYGEGEDNYEFSLGLNGLG 158 Query: 120 VSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPL-AVTGETEKTGTMVRFWPSLETFTN 178 + S + I R+G + ++ G L + +TG+++ + P E FT+ Sbjct: 159 LCATQYASAWMTADIYRDGYHYHLDFKKGENVGGLQKEPYKGRRTGSIIHWKPDDEVFTD 218 Query: 179 VTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK-------EDHFHYEGGIKAFVEYLNK 231 + + LR + +N+G+++ D+++ + + Y+ GI +V + Sbjct: 219 I-DVPGSYYKDVLRRQAVVNAGLTLNFTDEKEKDPATGKPWHESWCYQNGIADYVAEVAG 277 Query: 232 NKTPIHPNIFYFSTEKDG----------IGVEVALQWNDGFQENIYCFTNNIPQRDGGTH 281 T +F +E G + + A +++ Q + + N+ GG+ Sbjct: 278 EDTLT--PVFSCESEAVGRDREDQPDYKVRMSAAFCFSNKVQ-LLEYYHNSSWLEHGGSP 334 Query: 282 LAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLV 341 R A +N Y+ ++ KK + + + D ++ L+ V S + +QTK + Sbjct: 335 EHAVRTAFVYQINKYLKEKNLYKKGESTISFQDVQDCLVYVSSSFSTRTSYENQTKKAIT 394 Query: 342 SSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRR--KGALD 399 + V A+ + L Y LE P +A+ + +++ ++RE A + R+ ++ +D Sbjct: 395 NKFVSQAMTDFLKHYLEVYFLEKPEEAQKICQQVLVNKQSREHAEKTRQSIKKTLSTQID 454 Query: 400 LAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD 459 LA K DC+ RD A ELY+VEGDSA G+ K R+ + QAI+P++GKILN KA + Sbjct: 455 LANRVQKFVDCRTRDSARRELYIVEGDSAMGAVKSSRDSEYQAIMPIRGKILNCLKADYA 514 Query: 460 KMLSSQEVATLITALGCGIGRD--------EYNPDKLRYHSIIIMTDADVDGSHIRTLLL 511 ++ S + LI +GCG+ +N D LR++ I+I TDADVDG IRTL+L Sbjct: 515 RIFKSDVIVDLIKVMGCGVELGGKHNKELATFNLDNLRFNKIVICTDADVDGYQIRTLVL 574 Query: 512 TFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNAS 571 T YR P ++ +G+VYIA+ PLY++ + + + + I T+ + Sbjct: 575 TMLYRLTPTLINKGYVYIAESPLYEITTKDRTYFAYTESEKAAFLQKIGDKKYTIQRSKG 634 Query: 572 APALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDE 623 E + +N RR K M +++ + + L D Sbjct: 635 LGENDPEMM---------WLTTMNPESRRLIKVMPTDVVQTAQVFDILLGDN 677 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 74/167 (44%), Gaps = 5/167 (2%) Query: 641 EQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGL 700 E G K N + F IV VD + YR TL K Sbjct: 534 ELGGKHNKELATFNLDNLRFNKIVICTDADVDGYQI--RTLVLTMLYRLTPTLINKGYVY 591 Query: 701 LEEDAF--IERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPE 758 + E I +R + + +L K + +IQR KGLGE +PE +W TTM+PE Sbjct: 592 IAESPLYEITTKDRTYFAYTESEKAAFLQKIGDKKYTIQRSKGLGENDPEMMWLTTMNPE 651 Query: 759 SRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEEN-ALKAANIDI 804 SRR+++V D + Q+F L+GD + R+ I ++ A ++D+ Sbjct: 652 SRRLIKVMPTDVVQTAQVFDILLGDNLAGRKEHIAQHGAEYLDDLDV 698 >UniRef50_C1E5N4 DNA topoisomerase 2 n=1 Tax=Micromonas sp. RCC299 RepID=C1E5N4_9CHLO Length = 1459 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 157/705 (22%), Positives = 277/705 (39%), Gaps = 77/705 (10%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTDDG----------------------TGLHHMVFEVV 44 + L+ + RP Y+G + GL+ + E++ Sbjct: 55 EDIYQKKTQLEHILLRPDTYVGSCEKTEEKAWVYCKDTNKLVQRQMSFVPGLYKIFDEIL 114 Query: 45 DNAIDEALAGHCK-EIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGG 102 NA D + + V I + + V +DG GIP +H EEGV E+I L Sbjct: 115 VNATDNKVRDPSMVTLRVDIDQEAGCIRVYNDGNGIPVEMHKEEGVYVPELIFGHLLTSS 174 Query: 103 KFDDNSYKVSGGLHGVGVSVVNALSQKLELV--IQREGKIHRQIYEHGVPQA--PLAVTG 158 ++DN KV+GG +G G + N S + + + +RQ++++ + + P+ Sbjct: 175 NYNDNEKKVTGGRNGYGAKLANIFSTEFVVETCDGSRERRYRQVFKNNMGEKCEPVVTKC 234 Query: 159 ETEKTGTMVRFWPSLET--FTNVTEFEYEILAKRLRELSF-LNSGVSIRLRDKRDGKEDH 215 + T + F P L T + + ++ KR+ + + + + L +R + Sbjct: 235 KPTDNWTCITFKPDLAKFNMTELEDDTVALMCKRVYDAAGNIGKNTKVFLNGERLKVK-- 292 Query: 216 FHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQ 275 G +V+ + + P ++ EK EV + +D F N I Sbjct: 293 -----GFSDYVDLYLEGREN-APKVY----EKVNDRWEVCVTISDSGNFQQVSFVNGICT 342 Query: 276 RDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQ 335 GGTH+ + L + K+ S K + + L V+ + +P F SQ Sbjct: 343 MKGGTHVNQVADEVAGKLLEKIKKKEKSCK---NLKAAHVKNHLWVFVNALIENPAFDSQ 399 Query: 336 TKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRR- 394 TK+ L + + + ++ + + +++ I++ + + ++++EM + Sbjct: 400 TKETLNTRASNFGSKYEASDKVIK---------QMMNSGIVEQILSWASFKQSKEMKKSD 450 Query: 395 -KGALDLAGLPGKLADCQE---RDPALSELYLVEGDSAGGSAKQGRN---RKNQAILPLK 447 K A L G+P KL D + R+ L L EGDSA A G + R + PL+ Sbjct: 451 GKKATRLTGIP-KLDDANDAGGRNSEHCTLILTEGDSAKALAVSGLSVVGRDRYGVFPLR 509 Query: 448 GKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIR 507 GK+LNV A D+++++ E+ + LG G + LRY I+IMTD D DGSHI+ Sbjct: 510 GKLLNVRDASHDQIMNNAEINHIKQILGLRHGTTYESAKSLRYGHIMIMTDQDHDGSHIK 569 Query: 508 TLLLTFFYRQMPEIVE-RGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATL 566 LL+ F + P +++ G + P+ K KGKQ + D ++ G Sbjct: 570 GLLINFLHAHFPSLLKIPGFLVEFITPIIKATKGKQSKVFYTLPEYDNWKEHAEETGTGR 629 Query: 567 HTNASAPALAGEALEKLVSEYNAT---QKMINRMERRYPKAMLKELIYQPTLTEADLSDE 623 N G + K EY A K ++ + + E Sbjct: 630 GWNIKYYKGLGTSTAKEAKEYFAALDHHKKTFAWTTDGDGNLID-MAFSKKRVEDR---- 684 Query: 624 QTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRT 668 W+NA + G ++D N E LF +R+ Sbjct: 685 ---KAWLNA-YEPGTYLDMTGDDVRYDDFINKELILFSRADLMRS 725 >UniRef50_Q5KSK9 DNA topoisomerase 2 n=5 Tax=Basidiomycota RepID=Q5KSK9_COPCI Length = 1572 Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 138/593 (23%), Positives = 243/593 (40%), Gaps = 52/593 (8%) Query: 6 DSSSIKVLKGLDAVRKRPGMYIGDTDDGT----------------------GLHHMVFEV 43 S + L L+ + KRP YIG + T G +V E+ Sbjct: 99 TSEMYQKLTQLEHILKRPDSYIGSIETITTPMWTYDSETKRMVHREVKYVPGFFKIVDEI 158 Query: 44 VDNAIDEALAGH-CKEIIVTIH-ADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAG 101 + NA D + + VTI + ++SV ++GRGIP IH +E + E+I L Sbjct: 159 LVNAADNKINDPSMDTLKVTIDVEEGTISVYNNGRGIPIEIHSKEKMYIPEMIFGHLLTS 218 Query: 102 GKFDDNSYKVSGGLHGVGVSVVNALSQKLELV--IQREGKIHRQIYEHGVPQAPLAVTGE 159 +DD+ K++GG +G G + N S + + + + ++Q + + + A + Sbjct: 219 TNYDDDEKKLTGGRNGYGAKLANIYSLEFTVETADKNTSQKYKQTWTDNMSKCGKAKITK 278 Query: 160 TEK--TGTMVRFWPSLETFT--NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDH 215 + T + F P L+ F ++ E +L +R+ +++ V + L D+R ++ Sbjct: 279 NTRGEEYTRITFRPDLKRFGMNSIDEDTVSLLKRRVFDMAGTVKDVKVFLNDERLKIKNF 338 Query: 216 FHYEGGIKAFVEYLNKNKTPIHPNI-FYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIP 274 Y + V+ K+ E+ E+A + F N+I Sbjct: 339 KQYVEMYVSSVQEAAAEKSGGAAQPKQTVIHEQISDRWEIAYTLSTEGTFQHVSFANSIA 398 Query: 275 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 334 GGTH+ +++ L + K+ + R + V + +P F S Sbjct: 399 TSKGGTHVNYIADQISKALVTSISKKNK----GATVKPAQIRNHMWLFVKSLIVNPTFDS 454 Query: 335 QTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRR 394 QTK+ L K + +++ + K+ I+D + ++M R Sbjct: 455 QTKELLTLPSSKFGSKPTISDEFIK---------KVAKSGIVDNVLNWAKFKADQQMKRA 505 Query: 395 KGALDLAGLP-GKLADCQ---ERDPALSELYLVEGDSAGGSAKQGRN---RKNQAILPLK 447 G L KL+D R L L EGDSA A G R N + PL+ Sbjct: 506 DGTKRSRLLGLAKLSDANNAGTRHAQDCTLILTEGDSAKALAIAGLGVVGRDNFGVFPLR 565 Query: 448 GKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIR 507 GK+LNV +AR D+++ ++E+ + +G +D N LRY ++IMTD D DGSHI+ Sbjct: 566 GKLLNVREARHDQIMKNEEIQNIKKIMGLQHNKDYTNTSSLRYGRLMIMTDQDHDGSHIK 625 Query: 508 TLLLTFFYRQMPEIVERG-HVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISI 559 L++ F P +++ + P+ +VKKG + + +Q+ Sbjct: 626 GLIINFLDHFYPSLLKIPDFLVEFVTPIVRVKKGNKVKDFFTIPEYEQWLEET 678 >UniRef50_UPI0000DB6EE1 PREDICTED: similar to DNA topoisomerase 2-alpha (DNA topoisomerase II, alpha isozyme) n=1 Tax=Apis mellifera RepID=UPI0000DB6EE1 Length = 1407 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 137/588 (23%), Positives = 242/588 (41%), Gaps = 56/588 (9%) Query: 10 IKVLKGLDAVRKRPGMYIGDTDDGT----------------------GLHHMVFEVVDNA 47 + L+ + RP YIG + T GL+ + E++ NA Sbjct: 23 YQKKSQLEHILLRPDTYIGSVEPVTEIMWVYDKEKESMTQKEIKYVPGLYKIFDEILVNA 82 Query: 48 IDEALAGH-CKEIIVTIHADNSV-SVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFD 105 D I + I+A+N++ SV ++G+GIP IH EE + +I L +D Sbjct: 83 ADNKQRDPKMDTIKIEINAENNIISVWNNGKGIPVVIHKEENMYVPTMIFGHLLTSSNYD 142 Query: 106 DNSYKVSGGLHGVGVSVVNALSQKLELVI--QREGKIHRQIYEHGV-PQAPLAVTGETEK 162 D KV+GG +G G + N S + + + K +Q + + + + + + + Sbjct: 143 DEEEKVTGGRNGYGAKLCNIFSHRFTVETASKEYKKCLKQTWSNNMGSASEPRIKDFSGE 202 Query: 163 TGTMVRFWPSLETFT--NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEG 220 T V F P L F ++ + ++++R +++ GV + L + ++ Sbjct: 203 DFTKVIFSPDLSKFKMQSLDDDIIALMSRRAYDIAASTRGVKVFLNGTKIPVKNF----- 257 Query: 221 GIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGT 280 K +V++ K + N E G EVA+ +D F N+I GG Sbjct: 258 --KDYVDFYIKGREDDVGNPLKIVYENCGPRWEVAIALSDK-GFQQMSFVNSIATTKGGR 314 Query: 281 HLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKL 340 H+ + + L + K+ KA V+ + L ++ + +P F SQTK+ + Sbjct: 315 HVDHVTELIVKQLTETLKKKN---KAGVTIKPFQIKNHLWIFINCLINNPTFDSQTKENM 371 Query: 341 VSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDL 400 + ++E + + +V ++ A+ + ++ + + + L Sbjct: 372 TLQPKSFGSKCTLSEKFITSVTKIG-----IVEAVLTWAKFKADSQLQK-LGPKSKQRKL 425 Query: 401 AGLPGKLADCQERDPAL---SELYLVEGDSAGGSAKQGR---NRKNQAILPLKGKILNVE 454 G+P KL D + L L EGDSA A G R I PL+GKILNV Sbjct: 426 QGIP-KLEDANDAGTNKSLECTLILTEGDSAKTMAVSGLAAIGRDKYGIFPLRGKILNVR 484 Query: 455 KARFDKMLSSQEVATLITALGCGIGRDEY---NPDKLRYHSIIIMTDADVDGSHIRTLLL 511 +A ++L + E+ LI LG + + LRY ++IMTD D DGSHI+ LL+ Sbjct: 485 EATHKQILENAEINNLIKILGLQYKKKYETREDLKTLRYGKMMIMTDQDQDGSHIKGLLI 544 Query: 512 TFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISI 559 F + P +++ V P+ K KG Q ++++ Sbjct: 545 NFIHHNWPSLLKLNFVEEFITPIVKATKGNQVLSFFSMPEFNKWKSET 592 >UniRef50_D1ZCL6 DNA topoisomerase 2 n=6 Tax=Sordariomyceta RepID=D1ZCL6_SORMA Length = 1915 Score = 480 bits (1236), Expect = e-134, Method: Composition-based stats. Identities = 149/702 (21%), Positives = 266/702 (37%), Gaps = 61/702 (8%) Query: 10 IKVLKGLDAVRKRPGMYIGDTDDG----------------------TGLHHMVFEVVDNA 47 + L L+ + KRP YIG + GL+ + E++ NA Sbjct: 130 YQKLTQLEHILKRPDTYIGSVERSEQKMWVFNKATGLMENRQISFVPGLYKIFDEILVNA 189 Query: 48 IDEALAGH-CKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFD 105 D + + V+I+ + +SV+++G+GIP IH E E+I L AG FD Sbjct: 190 ADNSQRDSSMTFLKVSINRESGEISVENNGKGIPVEIHGTEKCYVPELIFGHLLAGSNFD 249 Query: 106 DNSYKVSGGLHGVGVSVVNALSQKL--ELVIQREGKIHRQIYEHGVPQ-APLAVTGETEK 162 DN K GG +G G + N S++ E GK ++Q + + + + +T Sbjct: 250 DNEKKTVGGRNGYGAKLTNIFSREFILECQDSVNGKRYKQTWTDNMSKMSTPKITSNKAA 309 Query: 163 TGTMVRFWPSLETFTNVTEFEYEI---LAKRLRELSFLNSGVSIRLRDKRDGKEDHFH-- 217 + F P F + ++ L +R+ +++ SG+ + L + + Sbjct: 310 DFVRITFRPDFSKFGMADGIDDDLEALLYRRVYDMAGTVSGIKVWLNGEHLKLNFKTYCG 369 Query: 218 -YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQR 276 Y I + + + + + +G EV +DG F NNI Sbjct: 370 LYAKAIAKERDEVADGEDVTPATVIFEQQRSEGKLWEVGFTVSDG-SFQQVSFVNNIATT 428 Query: 277 DGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQT 336 GG+H+ + L M + K + + ++ + +P FSSQT Sbjct: 429 SGGSHVNYIADQIIEVL---MKELQRKKGKGHGLKTANVKNQFFIFINCLIDNPAFSSQT 485 Query: 337 KDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKG 396 K++L + + + Q+ + + K+ + ID + +R +++ + G Sbjct: 486 KEQLTTKPARFGSKCQLGDQFLK---------KVRQSEAIDNLLSFADKKRDKDLAKNDG 536 Query: 397 ALDLAGLPGKLADCQ---ERDPALSELYLVEGDSAGGSAKQGR---NRKNQAILPLKGKI 450 + KL + + L L EGDSA G A GR + + PL+GK+ Sbjct: 537 SKRKRISNDKLIEANYAGGKYSQECTLILTEGDSARGLAVAGRAILDPNRIGVFPLRGKM 596 Query: 451 LNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLL 510 LNV A D++L ++EV + LG G+ + LRY ++IM D D+DGSHI+ LL Sbjct: 597 LNVRDASADQILKNKEVENIKKFLGLKHGKVYTDTKDLRYGHLMIMADQDLDGSHIKGLL 656 Query: 511 LTFFYRQMPEIVE-RGHVYIAQPPLYKVKKG---KQEQYIKDDEAMDQYQISIALDGATL 566 + FF Q P ++ P+ KV +G ++ Q ++ + QY+ Sbjct: 657 INFFECQFPSLLRIPNFFQEFITPVVKVWQGPNPRKPQKLQGFFTLPQYEEWKES----- 711 Query: 567 HTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTV 626 H N S + Q + + + + A + Sbjct: 712 HKNELRRWKYKYLKGLGSSTTDDAQIYFTNLTKHLKEFDVMTREESEMFELAFSKKKADA 771 Query: 627 TRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRT 668 + A + + + N E LF +R+ Sbjct: 772 RKEWLAKCEPGTYLDHSTEKISYTDFVNRELILFSMADNIRS 813 >UniRef50_Q8SS63 DNA topoisomerase 2 n=1 Tax=Encephalitozoon cuniculi RepID=Q8SS63_ENCCU Length = 1144 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 141/600 (23%), Positives = 251/600 (41%), Gaps = 70/600 (11%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTDDG----------------------TGLHHMVFEVV 44 + + ++ + RP YIG + GL+ + E++ Sbjct: 5 EETYQKKTPVEHILLRPDTYIGSVEKEAQEMYVWDEENGRMVYKSIEYVPGLYKIFDEII 64 Query: 45 DNAIDEALAGH-CKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGG 102 NA D + I V+I + N +SV ++G+GIP IH EE V E+I L Sbjct: 65 VNAADNKIRDPKMDVIKVSIDPEGNEISVYNNGKGIPVRIHKEENVYVPELIFGNLLTSS 124 Query: 103 KFDDNSYKVSGGLHGVGVSVVNALSQKL--ELVIQREGKIHRQIYEHGVPQAP-LAVTGE 159 ++D+ KV+GG +G G + N S++ E K +RQ Y + ++ Sbjct: 125 NYNDDEKKVTGGRNGYGAKLCNIFSKEFVVETADCEVKKYYRQRYRDNMGVKEDPEISRY 184 Query: 160 TEKTGTMVRFWPSLETFTNV--TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFH 217 T+ T + F P L F + +L KR+ +L+ + V I L +KR + Sbjct: 185 TKGDFTKITFKPDLRRFKMTRLDDDIVALLRKRVYDLAGIVKDVKIFLNEKRIEVK---- 240 Query: 218 YEGGIKAFVE-YLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQR 276 G K +V+ Y+ + +H I E+AL ++ Q F N I Sbjct: 241 ---GFKEYVKLYIPPGASVVHQVI--------NDRWELALTTSEE-QFQQVSFVNGICTT 288 Query: 277 DGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQT 336 GGTH+ + L + K K+ +S R + ++ + +P F SQT Sbjct: 289 KGGTHVNHVVERIVDPLVEAIQK----KEKGLSVRPFQVRSCMFVFINSLIDNPAFDSQT 344 Query: 337 KDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKG 396 K+ L + + + +++N I+ + A++++++ + G Sbjct: 345 KENLTLRASAFGSKCEPMGDFVKSIIKN--------TPIVQKITSFAKAKQSQQLKKTDG 396 Query: 397 AL--DLAGLPGKLADCQERDPAL---SELYLVEGDSAGGSAKQGRN---RKNQAILPLKG 448 A L+G+P KL D + L L EGDSA A G + R + PL+G Sbjct: 397 AKTSRLSGIP-KLEDANFAGTSRSKDCTLILTEGDSAKTLAVAGLSVVGRDAYGVFPLRG 455 Query: 449 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRT 508 K+LNV +A +++ + E++++ LG + + LRY ++IMTD D DGSHI+ Sbjct: 456 KLLNVREASHKQIMENAEISSIKKILGLQHNKVYEDVSSLRYGHVMIMTDQDHDGSHIKG 515 Query: 509 LLLTFFYRQMPEIVE-RGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLH 567 L++ F P +++ G + P+ + K Q + ++++ + DG + Sbjct: 516 LIINFLDHFYPSLLKIPGFLQEFITPIIRATKKGQVRDFFTLPEYEEFKKNE--DGWNIK 573 >UniRef50_Q9Y8G8 DNA topoisomerase 2 n=79 Tax=cellular organisms RepID=TOP2_PENCH Length = 1587 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 140/616 (22%), Positives = 250/616 (40%), Gaps = 65/616 (10%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGT----------------------GLHHM 39 ++ S + L L+ + KRP Y+G T+ T GL+ + Sbjct: 60 KDTNVSEKYQKLTQLEHIIKRPDTYVGSTERTTQHMWVYSSESEGMEYREVSYVPGLYKI 119 Query: 40 VFEVVDNAIDEALAGH-CKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTV 97 E+V NA D EI VTI + +SV ++GRGIP +H +E + E+I Sbjct: 120 FDEIVVNAADNKQNDKNMDEIRVTIDRESGEISVWNNGRGIPIEMHSKEKMYVPELIFGH 179 Query: 98 LHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKL--ELVIQREGKIHRQIYEHGVPQ-APL 154 L +DD KV+GG +G G + N S + E R+ K ++Q + + + Sbjct: 180 LLTSSNYDDTQMKVTGGRNGFGAKLCNVFSTEFTIETQDSRQKKKYKQTWTENMTKMGKA 239 Query: 155 AVTGETEKTGTMVRFWPSLET--FTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK 212 +T T V F P T + + ++ +R+ +L+ + V+++L R Sbjct: 240 KITDAKGADYTKVTFKPDYAKFGMTGMDDDFEALVKRRVYDLAG-TAKVAVKLNGSRIPI 298 Query: 213 EDHFHYEGGIKAFVEYLNKNKTPIHP----NIFYFSTEKDGIGVEVALQWNDGFQENIYC 268 + Y ++ + + + + + + P I S + EV +DG Sbjct: 299 RNFKMY---MEMYTKAIRRERGDMGPAGKNEIITCSPD---PRWEVGFAVSDG-AFQQVS 351 Query: 269 FTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVP 328 F N+I GGTH+ + L + K+ K + R + V+ + Sbjct: 352 FVNSIAITSGGTHVNYIADQICSKLAEQVKKKN---KNGATLKPAQIRNHIFIFVNALIV 408 Query: 329 DPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRA 388 +P F+SQTK++L + + + + + E + +L+ I+ + Sbjct: 409 NPAFTSQTKEQLTTKQSQFGSKCVLEEDFYKKILKTEVMTNILH---------FAQQKAD 459 Query: 389 REMTRRKGALDLAGLPGKLADCQE---RDPALSELYLVEGDSAGGSAKQGR---NRKNQA 442 + + + G KL D + ++ L L EGDSA G A GR Sbjct: 460 QMLKKTDGGRRSRMNNPKLTDANKAGTKEGHHCTLILTEGDSAKGLAMAGRAVVGPDLFG 519 Query: 443 ILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVD 502 + PL+GK+LNV A FD++ +QE+ + +G ++ + LRY ++I TD D D Sbjct: 520 VFPLRGKLLNVRDASFDQIAKNQEIQNIKNFIGLQHKKEYTDTRGLRYGHLMITTDQDHD 579 Query: 503 GSHIRTLLLTFFYRQMPEIVERG-HVYIAQPPLYKVKKG-----KQEQYIKDDEAMDQYQ 556 GSHI+ LL+ F Q P +++ + P+ KV KG +++ + ++ Sbjct: 580 GSHIKGLLINFLQAQFPSLLKIPEFLIEFITPIVKVWKGDPKNPTKQRSFFTMPEYEAWK 639 Query: 557 ISIALDGATLHTNASA 572 + H Sbjct: 640 EEHGHERGWEHKYYKG 655 >UniRef50_B9PK68 DNA topoisomerase 2 n=3 Tax=Toxoplasma gondii RepID=B9PK68_TOXGO Length = 1688 Score = 478 bits (1230), Expect = e-133, Method: Composition-based stats. Identities = 147/700 (21%), Positives = 249/700 (35%), Gaps = 123/700 (17%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTDDGT----------------------GLHHMVFEVV 44 + L+ + RP YIG T+ T GL+ +V E++ Sbjct: 38 EQRYQKKSQLEHILLRPDTYIGSTEVHTQALWVMEEGQETMVYKTINYVPGLYKIVDEIL 97 Query: 45 DNAID--------------EALAGHCKEIIVTIH-ADNSVSVQDDGRGIPTGIHPEEGVS 89 NA D + A I + I+ A +S+ +DG GIP IH E V Sbjct: 98 VNAADVKAREGEEQKGKPLKPGARRMSAIKIDINKASGRISIWNDGEGIPVAIHQEHKVY 157 Query: 90 AAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELV--IQREGKIHRQIYEH 147 E+I L +DD+ +V+GG +G G + N S++ + K + + Sbjct: 158 VPEMIFGQLLTSDNYDDSECRVTGGRNGYGAKLTNIFSREFTVECADGERKKKFKMTWTK 217 Query: 148 GVPQA-PLAVTGETEKTGTMVRFWPSLET--FTNVTEFEYEILAKRLRELSFLNSGVSIR 204 + Q ++ + F P T + +L KR +L+ SGV + Sbjct: 218 NMEQKSESEISSYNGTDYVKISFIPDFAKFGMTGFDDDSLSLLRKRAYDLAG-TSGVKVF 276 Query: 205 LRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDG--------------- 249 L R Y + ++ K F S + Sbjct: 277 LNGTRIDINSFSQY---VDLYLGGRKSEKPSKEKEEFDESDDDWDEGPKRKKAAKKNGKK 333 Query: 250 ------------------------IGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGF 285 EV + DG Q F N+I GGTH++ Sbjct: 334 GELEDEEDVANGVEKKVIKIHDKQWRWEVVISSTDGGQFQQVSFVNSICTTKGGTHVSHV 393 Query: 286 RAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEV 345 + + + K K + ++ L VS + +P F SQTK+ L + Sbjct: 394 IEPLLAAI---VKKANTKNKGGMEIKAAHVKQHLWIFVSCLIVNPAFDSQTKETLTTKPA 450 Query: 346 KSAVEQQMNEL---------------------------LAEYLLENPTDAKIVVGKIIDA 378 K + + + + LL+ + V + + Sbjct: 451 KFGSKCTLADKTIGQVVKSSIVENVVLWAQTKQQSVRAFSLSLLDCWRRGALSVDRPVFR 510 Query: 379 ARAREAARRAREMTRRKGALDLAGLPGKLADCQE---RDPALSELYLVEGDSAGGSAKQG 435 R+ ++ + KG LAG+P KL D + R L L EGDSA S G Sbjct: 511 LFVFVELRKQMKVGKTKGRERLAGIP-KLEDANDAGGRHSQDCTLILTEGDSAKTSCLAG 569 Query: 436 RN---RKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHS 492 + R + PL+GK+LNV A F ++ ++E+ ++ +G + + LRY S Sbjct: 570 LSVVGRDRYGVFPLRGKLLNVRDASFKQLTENKEIQNILKIVGLQVNDRTEDTRGLRYGS 629 Query: 493 IIIMTDADVDGSHIRTLLLTFFYRQMPEIVE-RGHVYIAQPPLYKVKKGKQEQYIKDDEA 551 ++IMTD D DGSHI+ LL+ + P++++ RG + P+ KV K E+ Sbjct: 630 VMIMTDQDHDGSHIKGLLINMMHHYWPQLLKCRGFLKAFSTPIVKVSKNNVEKAFYTIPE 689 Query: 552 MDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQ 591 +Q++ S G + ++ ++ + Q Sbjct: 690 YEQWKRSCNTTGWKIKYYKGLGTSTDREFKEYFNDLDKHQ 729 >UniRef50_A7ASL8 DNA gyrase subunit B, putative n=1 Tax=Babesia bovis RepID=A7ASL8_BABBO Length = 944 Score = 478 bits (1230), Expect = e-133, Method: Composition-based stats. Identities = 201/551 (36%), Positives = 308/551 (55%), Gaps = 67/551 (12%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 + Y + I VL+GL+AVRKRPGMYIG+T TGLH ++FE++DN++DE LAG C +I VT Sbjct: 148 SEYSTDDIVVLQGLEAVRKRPGMYIGNT-TETGLHQLLFEILDNSVDEYLAGCCNKITVT 206 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDD---------------- 106 + AD S + D+GRGIP + + G S E ++TVLH+GGKF+D Sbjct: 207 LRADGSAEISDNGRGIPCDVSEKTGKSGLETVLTVLHSGGKFNDTTSKPTPEDQVDEFYD 266 Query: 107 ------------------------NSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHR 142 N Y+ + GLHGVG+SVVNALS L + + K + Sbjct: 267 THISRKFRSQHVRGLRKRLKDASSNPYEYASGLHGVGLSVVNALSAWLRADVYKGTKQYS 326 Query: 143 QIYEHGVPQAPLAVTGETEKTGTMVRFWPSL--------------ETFTNVTEFEYEILA 188 G+ PL+V+ ++TGT + F P E + F ++ + Sbjct: 327 IQLSRGMVTEPLSVSKCAKRTGTTISFMPDYDHVFIAHHDHQVDTECPGCASAFNHDTVR 386 Query: 189 KRLRELSFLNSGVSIRLRDKRDG------KEDHFHYEGGIKAFVEYLNKNKTPIHP--NI 240 R+ ELS++N +++RL D+R E+ F ++GG + F++ + K++ P++ NI Sbjct: 387 NRIEELSYVNPMLTLRLVDERLVNEDGSFHEETFMHKGGTREFLQDIIKDRVPLYKSANI 446 Query: 241 FYFSTEKDGIGVEVALQWN-DGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDK 299 + G+ VEV+L W + + + F NN+ GTH+ GF+AA+T+ +N + Sbjct: 447 INIRGKSGGVEVEVSLSWAAETYAAQLKGFANNVSTSA-GTHIEGFKAAITKAVNHACRR 505 Query: 300 EGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAE 359 G K S +G+ REGL A++SVK+ +F QTK KL + ++AVE+ ++ + E Sbjct: 506 AGLFKHKAPSISGEFIREGLTAIISVKLMGAEFDGQTKSKLGNQIARTAVERIVSYQMNE 565 Query: 360 YLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDL-AGLPGKLADCQERDPALS 418 L ++P + K I A RA E A+ A+E+ R+K A L GLP KL+DC D L+ Sbjct: 566 ILEKHPQLLTAIYNKSIAAKRAFEVAKHAKELVRQKNANFLTTGLPAKLSDCTSNDIGLT 625 Query: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD-KMLSSQEVATLITALGCG 477 EL++VEG+SA G+AKQ RNR+ QA+LPLKGKILN+EK D K++ ++E+ LI+++G Sbjct: 626 ELFIVEGESAAGNAKQARNRRFQAVLPLKGKILNIEKISSDLKVMENEEIKLLISSIGLA 685 Query: 478 IGRDEYNPDKL 488 + + D L Sbjct: 686 VNPQTWRQDTL 696 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 31/76 (40%), Positives = 52/76 (68%) Query: 721 QALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTL 780 + + +S RG+++QR+KGLGEM +QLW+TTM+P+ R + R++V+D + A ++ L Sbjct: 859 EQTPEIKPDSMRGITVQRFKGLGEMMAQQLWDTTMNPDKRILRRISVQDGMRASKMLELL 918 Query: 781 MGDAVEPRRAFIEENA 796 MG V+ R+ FI +A Sbjct: 919 MGGDVQSRKEFIFTHA 934 Score = 75.8 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 33/78 (42%), Positives = 46/78 (58%), Gaps = 12/78 (15%) Query: 488 LRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK---KGKQEQ 544 LRY II++TDADVDG+H+R LLL +R P++ E G VYIA PPLY++ KG + + Sbjct: 758 LRYGKIILLTDADVDGAHLRILLLGLLFRICPQLYEHGRVYIACPPLYRITNMRKGNKAR 817 Query: 545 ---------YIKDDEAMD 553 Y +E + Sbjct: 818 NGPNASAYTYAWSEEELP 835 >UniRef50_B3H4G2 DNA topoisomerase 2 n=14 Tax=Magnoliophyta RepID=B3H4G2_ARATH Length = 1438 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 138/592 (23%), Positives = 252/592 (42%), Gaps = 58/592 (9%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTDDGT--------------------GLHHMVFEVVDN 46 + L+ + RP YIG + T GL+ + E++ N Sbjct: 32 EEMYQKKSQLEHILLRPDTYIGSIEKHTQTLWVYEKDEMVQRPVTYVPGLYKIFDEILVN 91 Query: 47 AIDEALAG-HCKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKF 104 A D + V I + N +SV + G G+P IH EEG+ E+I L + Sbjct: 92 AADNKQRDAKMDSVQVVIDVEQNLISVCNSGAGVPVEIHQEEGIYVPEMIFGHLLTSSNY 151 Query: 105 DDNSYKVSGGLHGVGVSVVNALSQKL--ELVIQREGKIHRQIYEHGVPQA--PLAVTGET 160 DDN K +GG +G G + N S + E + K ++Q++E+ + + P+ Sbjct: 152 DDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFENNMGKKSEPVITKCNK 211 Query: 161 EKTGTMVRFWPSLET--FTNVTEFEYEILAKRLRELS-FLNSGVSIRLRDKRDGKEDHFH 217 + T V F P L+ T + + +++KR+ +++ L V + L K+ + Sbjct: 212 SENWTKVTFKPDLKKFNMTELEDDVVALMSKRVFDIAGCLGKSVKVELNGKQIPVK---S 268 Query: 218 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRD 277 + + ++ NK++T + TEK EV + ++G Q F N+I Sbjct: 269 FTDYVDLYLSAANKSRT---EDPLPRLTEKVNDRWEVCVSLSEG-QFQQVSFVNSIATIK 324 Query: 278 GGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTK 337 GGTH+ + +T ++ K + + + L V+ + +P F SQTK Sbjct: 325 GGTHVDYVTSQIT----NHIVAAVNKKNKNANVKAHNVKNHLWVFVNALIDNPAFDSQTK 380 Query: 338 DKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGA 397 + L + + +++E + K+ +++ + ++ +++ + GA Sbjct: 381 ETLTLRQSSFGSKCELSEDFLK---------KVGKSGVVENLLSWADFKQNKDLKKSDGA 431 Query: 398 LDLAGLPGKLADCQE---RDPALSELYLVEGDSAGGSAKQGRNR---KNQAILPLKGKIL 451 L KL D E ++ L L L EGDSA A GR+ + PL+GK+L Sbjct: 432 KTGRVLVEKLDDAAEAGGKNSRLCTLILTEGDSAKSLALAGRSVLGNNYCGVFPLRGKLL 491 Query: 452 NVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLL 511 NV +A ++ +++E+ L LG N + LRY ++IMTD D DGSHI+ LL+ Sbjct: 492 NVREASTTQITNNKEIENLKKILGLKQNMKYENVNSLRYGQMMIMTDQDHDGSHIKGLLI 551 Query: 512 TFFYRQMPEIVERG-HVYIAQPPLYKVKKG--KQEQYIKDDEAMDQYQISIA 560 F + P +++ + P+ K + K+ ++++ S+ Sbjct: 552 NFIHSFWPSLLQVPSFLVEFITPIVKATRKGTKKVLSFYSMPEYEEWKESLK 603 >UniRef50_P30182 DNA topoisomerase 2 n=6 Tax=Eukaryota RepID=TOP2_ARATH Length = 1473 Score = 476 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 138/592 (23%), Positives = 252/592 (42%), Gaps = 58/592 (9%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTDDGT--------------------GLHHMVFEVVDN 46 + L+ + RP YIG + T GL+ + E++ N Sbjct: 32 EEMYQKKSQLEHILLRPDTYIGSIEKHTQTLWVYEKDEMVQRPVTYVPGLYKIFDEILVN 91 Query: 47 AIDEALAG-HCKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKF 104 A D + V I + N +SV + G G+P IH EEG+ E+I L + Sbjct: 92 AADNKQRDAKMDSVQVVIDVEQNLISVCNSGAGVPVEIHQEEGIYVPEMIFGHLLTSSNY 151 Query: 105 DDNSYKVSGGLHGVGVSVVNALSQKL--ELVIQREGKIHRQIYEHGVPQA--PLAVTGET 160 DDN K +GG +G G + N S + E + K ++Q++E+ + + P+ Sbjct: 152 DDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFENNMGKKSEPVITKCNK 211 Query: 161 EKTGTMVRFWPSLET--FTNVTEFEYEILAKRLRELS-FLNSGVSIRLRDKRDGKEDHFH 217 + T V F P L+ T + + +++KR+ +++ L V + L K+ + Sbjct: 212 SENWTKVTFKPDLKKFNMTELEDDVVALMSKRVFDIAGCLGKSVKVELNGKQIPVK---S 268 Query: 218 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRD 277 + + ++ NK++T + TEK EV + ++G Q F N+I Sbjct: 269 FTDYVDLYLSAANKSRT---EDPLPRLTEKVNDRWEVCVSLSEG-QFQQVSFVNSIATIK 324 Query: 278 GGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTK 337 GGTH+ + +T ++ K + + + L V+ + +P F SQTK Sbjct: 325 GGTHVDYVTSQIT----NHIVAAVNKKNKNANVKAHNVKNHLWVFVNALIDNPAFDSQTK 380 Query: 338 DKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGA 397 + L + + +++E + K+ +++ + ++ +++ + GA Sbjct: 381 ETLTLRQSSFGSKCELSEDFLK---------KVGKSGVVENLLSWADFKQNKDLKKSDGA 431 Query: 398 LDLAGLPGKLADCQE---RDPALSELYLVEGDSAGGSAKQGRNR---KNQAILPLKGKIL 451 L KL D E ++ L L L EGDSA A GR+ + PL+GK+L Sbjct: 432 KTGRVLVEKLDDAAEAGGKNSRLCTLILTEGDSAKSLALAGRSVLGNNYCGVFPLRGKLL 491 Query: 452 NVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLL 511 NV +A ++ +++E+ L LG N + LRY ++IMTD D DGSHI+ LL+ Sbjct: 492 NVREASTTQITNNKEIENLKKILGLKQNMKYENVNSLRYGQMMIMTDQDHDGSHIKGLLI 551 Query: 512 TFFYRQMPEIVERG-HVYIAQPPLYKVKKG--KQEQYIKDDEAMDQYQISIA 560 F + P +++ + P+ K + K+ ++++ S+ Sbjct: 552 NFIHSFWPSLLQVPSFLVEFITPIVKATRKGTKKVLSFYSMPEYEEWKESLK 603 >UniRef50_A8PTE9 DNA topoisomerase 2 n=1 Tax=Malassezia globosa CBS 7966 RepID=A8PTE9_MALGO Length = 1376 Score = 471 bits (1211), Expect = e-131, Method: Composition-based stats. Identities = 140/629 (22%), Positives = 248/629 (39%), Gaps = 79/629 (12%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTDD----------------------GTGLHHMVFEVV 44 S + + L L+ V +RP YIG + G + + E++ Sbjct: 24 SDTYQKLSQLEHVLRRPDTYIGSVERRTETMWVYDVAKEQMAYRDTSYVPGFYKIFDEIL 83 Query: 45 DNAIDEALAGH-CKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGG 102 NA D + + VTI D ++SV ++G+GIP IH +E V E+I L Sbjct: 84 VNAADNKVRDPSMDTMKVTIDKDAGTISVWNNGQGIPVEIHEKEQVYIPELIFGNLLTSS 143 Query: 103 KFDDNSYKVSGGLHGVGVSVVNALSQKL--ELVIQREGKIHRQIYEHGV--PQAPLAVTG 158 +DD+ KV+GG +G G + N S + E ++ ++Q++ + + P Sbjct: 144 NYDDDEAKVTGGRNGFGAKLTNIYSTEFIVETADKQRELKYKQVFSNHMHDKDKPKITKN 203 Query: 159 ETEKTGTMVRFWPSLET--FTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHF 216 ++ T + F P L ++ +L KR+ +++ Sbjct: 204 TRKEEYTCITFKPDLSLFHMDSIHPDTEALLMKRVFDMAGT----------------RVI 247 Query: 217 HYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQR 276 GG P I Y ++E G EV +DG F NNI Sbjct: 248 RPHGG-----------NPVPRPTIVYDASEDHGRLWEVGFAVSDG-TARQVSFVNNIATI 295 Query: 277 DGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQT 336 GG H+ + + + ++ K K + R+ L V+ ++ +P F SQT Sbjct: 296 KGGKHVDHVESQIVERIMEHLKKG----KKDAPIKANHIRQQLWIFVNCQIVNPTFDSQT 351 Query: 337 KDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKG 396 K+ L + M + A+ +L++ +ID ++ + R++ G Sbjct: 352 KETLTLKPSAFGSKWVMPDDFAKKVLKS---------GVIDNVQSIVQYHQDRQLQATDG 402 Query: 397 ALDLAGLPGKLADCQ---ERDPALSELYLVEGDSAGGSAKQGRN---RKNQAILPLKGKI 450 KL D + A L L EGDSA G A G + R + PL+GK+ Sbjct: 403 RKRSRVSVTKLEDANWAGTKRSAECTLILTEGDSAKGLAVSGLSEVGRDAYGVFPLRGKL 462 Query: 451 LNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLL 510 LNV +A +D++ + E+ + LG G+ D LRY S++IMTD D DGSHI+ L+ Sbjct: 463 LNVREATYDQIKKNTEIKNIKEILGLQHGKSYSTVDGLRYGSLMIMTDQDFDGSHIKGLI 522 Query: 511 LTFFYRQMPEIVE-RGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQIS-IALDGATLHT 568 + + P +++ + P+ K KG++ + +Q++ + G T Sbjct: 523 INYLDHFYPSLLKIPNFLVEFITPIIKATKGQEVRSFFTIPEFEQWKATGDGGRGWTTKY 582 Query: 569 NASAPALAGEALEKLVSEYNATQKMINRM 597 +++ + + + + Sbjct: 583 YKGLGTSKPYEMKEYFRDMDRHMLSFDTI 611 >UniRef50_A5E7X7 DNA topoisomerase 2 n=4 Tax=Saccharomycetaceae RepID=A5E7X7_LODEL Length = 1492 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 154/644 (23%), Positives = 266/644 (41%), Gaps = 65/644 (10%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTDDGT----------------------GLHHMVFEVV 44 S + + L L+ + KRP YIG + GL+ + E++ Sbjct: 80 SETYQKLSQLEHILKRPDTYIGSVEKTRTEMWCFDVESESMKFQEVTIVPGLYKIFDEIL 139 Query: 45 DNAIDEALAGH-CKEIIVTIHADNS-VSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGG 102 NA D + K I V I +N+ + V +DG+GIP IH +E + E+I L Sbjct: 140 VNAADNKIRDPSMKNIKVKIDPENNVIQVMNDGKGIPVEIHTKEKMYIPELIFGNLLTSS 199 Query: 103 KFDDNSYKVSGGLHGVGVSVVNALSQKLELV--IQREGKIHRQIYEHGVPQ--APLAVTG 158 +DD+ KV+GG +G G + N S + E+ GK+++Q++ + + P T Sbjct: 200 NYDDDQKKVTGGRNGFGAKLCNIFSTQFEVETADLNTGKLYKQVWTDNMTKVGKPKITTL 259 Query: 159 ETEKTGTMVRFWPSLETFT--NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHF 216 +T+K T + F P L+ F ++ E +L +R+ +L +I L DKR Sbjct: 260 KTKKEYTKITFMPDLQKFGMDSLDEDLLSVLRRRVYDLCGTVRNCNIYLNDKRLSVN--- 316 Query: 217 HYEGGIKAFVEYLN------KNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFT 270 ++ ++ +V+ + + P E EVA +DG N F Sbjct: 317 SFKAYVEMYVKAIRERSPEPEGDAESKPATTTIVHEVFNDRWEVAFAVSDG-NFNQVSFV 375 Query: 271 NNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDP 330 N+I GGTH+ + L + K KK K+ + R+ + ++ + +P Sbjct: 376 NSIATTAGGTHVKYVSDQIITKLVETLSKREKGKK-KLMIKPQEVRDNMFIFINSLIENP 434 Query: 331 KFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRARE 390 F+SQTK++L + + ++ +++ +I+ I D RA A + Sbjct: 435 AFTSQTKEQLTTKPSQFGGKE-------KFIATENLINRILKTGIADKIRAIANANEDKA 487 Query: 391 MTRRKGALDLA-GLPGKLADCQE---RDPALSELYLVEGDSAGGSAKQGR---NRKNQAI 443 + + G+ L L D + +D L L EG SA A G R Sbjct: 488 LQKADGSKKLRIKNQVNLVDANKAGTKDGLKCTLILTEGLSALNLAVAGLTVVGRDYYGC 547 Query: 444 LPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDE--YNPDKLRYHSIIIMTDADV 501 PL+GK+LNV +A D++ + E+ L +G + N LRY I+IMTD D Sbjct: 548 FPLRGKLLNVREASADQVSKNIEINALKQIIGLQHKKVYTQENIKSLRYGHIMIMTDQDQ 607 Query: 502 DGSHIRTLLLTFFYRQMPEIVE-RGHVYIAQPPLYKVK-KGKQEQYIKDDEAMDQYQISI 559 DGSHI+ L++ F P +++ G + P+ KV G+ + + +M +++ Sbjct: 608 DGSHIKGLIINFLETSFPGLLDIPGFLLQFITPIVKVTVNGRGAKKVIPFYSMPEFEAWR 667 Query: 560 ALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPK 603 +G G + EY ++R + Sbjct: 668 EGEGQNCRWTQKYYKGLGTSTPLEAREY------FTALDRHLKR 705 >UniRef50_Q6PUA3 DNA topoisomerase 2 n=4 Tax=Tetrahymena thermophila RepID=Q6PUA3_TETTH Length = 1662 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 139/592 (23%), Positives = 248/592 (41%), Gaps = 61/592 (10%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTDDG----------------------TGLHHMVFEVV 44 ++ + L+ + RP Y+G + L+ + E++ Sbjct: 4 ETTYQKKTQLEHILLRPDTYVGSNEYQDEQMWVLADDGSSFENRQIKYVPALYKIFDEIL 63 Query: 45 DNAIDEALAG-HCKEIIVTIH-ADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGG 102 NA D K + V I +N +S+ +DG+GIP IH E + E+I L Sbjct: 64 VNAADNYQRDKRMKRLDVIIDQKNNCISILNDGKGIPVQIHKEYNIYVPELIFGHLLTSS 123 Query: 103 KFDDNSYKVSGGLHGVGVSVVNALSQKLELV--IQREGKIHRQIYEHGVP-QAPLAVTGE 159 ++D KV GG +G G + N S K + + K + + + Q+ ++ Sbjct: 124 NYNDEEKKVVGGRNGFGAKLTNIFSTKFIVESADSKNKKKFQMTWTKNMSEQSEPQISSY 183 Query: 160 TEKTGTMVRFWPSLET--FTNVTEFEYEILAKRLRELSFLNSG-VSIRLRDKRDGKEDHF 216 TE T + F+P L+ + + +++ KR+ +++ + G V + L +R Sbjct: 184 TESDYTKITFYPDLKKFHMKELEKDIVDLMKKRVYDMAGVIGGSVKVSLNGERIS----- 238 Query: 217 HYEGGIKAFVEYLNKNKTPIHPNIFYFSTEK--DGIGVEVALQWNDGFQENIYCFTNNIP 274 I +F +Y + + S K + EV ++G Q F N+I Sbjct: 239 -----ISSFSDYCDFYLKNQGAEVIKVSDNKGTNNQRWEVIASLSEG-QFQQVSFVNSIC 292 Query: 275 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 334 GGTH+ +T L + K K+ ++ + L V+ + +P F + Sbjct: 293 TSKGGTHVNYITDQITEKLMETLKK----KEKSLNIKQFQVKSHLWIFVNCLIENPSFDT 348 Query: 335 QTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRR 394 QTK+ L + +++E + LL++ ++ I+ ARA+E A+ A+ ++ + Sbjct: 349 QTKETLTLRQQSFGSTCEVSEKFIKELLKSN-----IINHILLQARAKEQAKMAKTLSAK 403 Query: 395 KGALDLAGLPGKLADCQ---ERDPALSELYLVEGDSAGGSAKQGR---NRKNQAILPLKG 448 K + L KL D R+ L + EGDSA A G R + PLKG Sbjct: 404 KQSRLLG--VPKLEDANDAGTRNAESCTLIITEGDSAKALAMSGIEVVGRDKFGVFPLKG 461 Query: 449 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRT 508 K+LNV + ++ + E+ +I +G + + N LRY SI+IM D D DGSHI+ Sbjct: 462 KMLNVRDSTSKQITENLEIQNIIKVMGMKLNTNYDNVKSLRYGSIMIMADQDHDGSHIKG 521 Query: 509 LLLTFFYRQMPEIVE-RGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISI 559 L + F P + + G + P+ KV+KG Q + +++ + Sbjct: 522 LFINFIQNFWPSLFQMDGFLKEFITPIVKVRKGNQSISFFSIQDFKRWKSTC 573 >UniRef50_A3DC64 DNA topoisomerase (ATP-hydrolyzing) n=11 Tax=Bacteria RepID=A3DC64_CLOTH Length = 661 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 182/646 (28%), Positives = 318/646 (49%), Gaps = 39/646 (6%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 + Y ++SIK LKG + VR RP + G D G H FE++ N+IDEA G K I V Sbjct: 9 AERYGNTSIKSLKGAERVRLRPAVIFGS-DGIEGCQHSFFEILSNSIDEAREGFGKVIEV 67 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNS---YKVSGGLHGV 118 T D S+ V+D GRGIP + E E++ L+AGGK+ +NS Y+ S GL+G+ Sbjct: 68 TRFKDRSIMVKDYGRGIPLDYNENEKRYNWELVFCELYAGGKYKNNSGENYEFSLGLNGL 127 Query: 119 GVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTG-ETEKTGTMVRFWPSLETFT 177 G S+ +++ + R+G + +E G L + E TGT++++ P LE FT Sbjct: 128 GSCATQYSSEYMDVTVFRDGMRYDLHFEKGENVGGLKKQKWDYESTGTIIKWRPDLEVFT 187 Query: 178 NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIH 237 ++ E + LR+ + +N+G+ L D+ + + YE GI +++ ++ +K Sbjct: 188 DI-NIPLEYYTEVLRKQAVVNAGLKFILYDEESDRVFEYCYENGIVDYIKEVSGDKA--F 244 Query: 238 PNIFYFSTEKDGIGVE----------VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRA 287 +I Y+ T G E +A +N+ + + N+ GG + Sbjct: 245 TDIQYYETSTRGRDREDKPEYKLKMQIAFCFNNEVN-LLEYYHNSSFLEYGGAPDKAVKN 303 Query: 288 AMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKS 347 A ++ ++ +G K + T D ++ LI V + + +QTK + + ++ Sbjct: 304 AFVYVIDKFLKSQGKYNKDESRITFQDIQDSLILVSNSFSTITSYENQTKKSITNKFIQE 363 Query: 348 AVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRK--GALDLAGLPG 405 A+ + + E L Y +EN + ++ +++ R+RE A + R ++K G +D++ Sbjct: 364 AMTEFLKEKLEVYFIENKVECTKILEQVLVNKRSRETAEKTRVNIKKKLSGNVDISNRVK 423 Query: 406 KLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQ 465 K DC+ +D E+Y+VEGDSA GS K R+ + QAI+P++GKILN KA +D + ++ Sbjct: 424 KFVDCRSKDVNKREIYIVEGDSALGSCKLARDAEFQAIIPVRGKILNCLKADYDSIFKNE 483 Query: 466 EVATLITALGCGIGRDE--------YNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQ 517 + L+ LGCG+ ++ + LR+ III TDADVDG IRTL+L YR Sbjct: 484 IIVDLLKVLGCGVEIKSKHNRELSTFDLNNLRWSKIIICTDADVDGYQIRTLILAMLYRL 543 Query: 518 MPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAG 577 +P +++ G V+IA+ PL++++ + + D+ ++ + L + G Sbjct: 544 VPTLIQVGKVFIAESPLFEIRTKDKTYFAYTDKEKNEIVSKLKGKYTILRSKG-----LG 598 Query: 578 EALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDE 623 E ++ Q +N RR + + ++ + L D Sbjct: 599 ENDPDMM-----WQTTMNPETRRLIQVVPDDIKKTEEFFDLFLGDN 639 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 61/318 (19%), Positives = 124/318 (38%), Gaps = 26/318 (8%) Query: 511 LTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNA 570 +T + Q + + + A K K + +I++ + + ++ + T Sbjct: 345 ITSYENQTKKSITNKFIQEAMTEFLKEKL--EVYFIENKVECTKILEQVLVNKRSRETAE 402 Query: 571 SAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWV 630 + L V N +K ++ + K + + L L+ + + Sbjct: 403 KTRVNIKKKLSGNVDISNRVKKFVDCRSKDVNKREIYIVEGDSALGSCKLARDAEFQAII 462 Query: 631 NALVSELNDKEQHGSQ-----------------WKFDVHTNAEQNLFE-PIVRVRTHGVD 672 LN + + N E + F+ +R + Sbjct: 463 PVRGKILNCLKADYDSIFKNEIIVDLLKVLGCGVEIKSKHNRELSTFDLNNLRWSKIIIC 522 Query: 673 TDYPLD----HEFITGGEYRRICTLGEKLRGLLEEDAFIE-RGERRQPVASFEQALDWLV 727 TD +D I YR + TL + + + E E R + + A ++ + +V Sbjct: 523 TDADVDGYQIRTLILAMLYRLVPTLIQVGKVFIAESPLFEIRTKDKTYFAYTDKEKNEIV 582 Query: 728 KESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEP 787 + + +I R KGLGE +P+ +W+TTM+PE+RR+++V D ++ F +GD + Sbjct: 583 SKLKGKYTILRSKGLGENDPDMMWQTTMNPETRRLIQVVPDDIKKTEEFFDLFLGDNLPG 642 Query: 788 RRAFIEENALKAAN-IDI 804 R+++IEE+ K + ID+ Sbjct: 643 RKSYIEEHGHKYLDMIDV 660 >UniRef50_A7ANB1 DNA topoisomerase 2 n=3 Tax=Piroplasmida RepID=A7ANB1_BABBO Length = 1437 Score = 468 bits (1204), Expect = e-130, Method: Composition-based stats. Identities = 147/605 (24%), Positives = 243/605 (40%), Gaps = 67/605 (11%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTD----------------------DGTGLHHMVFEVV 44 + L+ + RP YIG+T+ GL+ + E++ Sbjct: 9 EQRYQKKSQLEHILLRPDTYIGNTEMLTQQMWVYNQEAKRMLYEPVTFIPGLYKIFDEIL 68 Query: 45 DNAID-------EALAGHCKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMT 96 NA D + I V +A +++V +DG IP IH E V E+I Sbjct: 69 VNAADVHARQQSDPSLTRMTCIKVNFNATTGAITVFNDGEPIPVEIHKEHNVYVPEMIFG 128 Query: 97 VLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELV--IQREGKIHRQIYEHGVPQ--A 152 L +DD +++GG +G G + N S+ + + K +E + + + Sbjct: 129 ELLTSDNYDDEDGRITGGRNGFGAKLTNIFSKSFSVTCADSKRHKQFAMKWESNMTRVAS 188 Query: 153 PLAVTGETEKTGTMVRFWPSLETFT--NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRD 210 P V K V F P E F + E ++L KR+ +++ +G+ + D+R Sbjct: 189 PAKVGSYHGKDFVKVTFIPDYERFGIPTMDEGTLKVLLKRVYDVAG-TTGLRVYWNDERL 247 Query: 211 GKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFT 270 G D Y G + E + EV + DG F Sbjct: 248 GISDFKQYVG---LYFE----------DDPTVVKVYDKAHRWEVMVSATDGSGFQQVSFV 294 Query: 271 NNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDP 330 NNI GG+H+ + L + + K V + + V+ ++ +P Sbjct: 295 NNITTLKGGSHVQHVLEPLVTALTNKVKSKN---KDGVELKPYQIKNYIFLFVNCQIVNP 351 Query: 331 KFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRARE 390 F SQTK+ L + K + MN +L++ + +I+ A+ R ++ Sbjct: 352 TFDSQTKETLTTKPAKFGSKYIMNPKAVAQILKS-----TLTERILSFAQGRLNIELKKK 406 Query: 391 MTRRKGALDLAGLPGKLADCQ---ERDPALSELYLVEGDSAGGSAKQGRN---RKNQAIL 444 M K L G+P KL D R L L EGDSA S G + R N + Sbjct: 407 MKVTKAVNRLTGIP-KLEDANNAGTRHARNCTLILTEGDSAKTSCLAGLSVVGRDNYGVF 465 Query: 445 PLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDE-YNPDKLRYHSIIIMTDADVDG 503 PLKGK+LNV A + +++ + E+ ++ +G + + E PD LRY SI+IMTD D DG Sbjct: 466 PLKGKLLNVRDASYKQLVQNAEIQNILKIMGLDVSKKEQTTPDGLRYGSIMIMTDQDYDG 525 Query: 504 SHIRTLLLTFFYRQMPEIVE-RGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALD 562 SHI+ LL+ + P++++ RG + P+ K KG + ++ S + Sbjct: 526 SHIKGLLINLLHYFWPKMIQCRGFIREFVTPIIKATKGDSVLSFFTVQDYVRWVQSTNVA 585 Query: 563 GATLH 567 G + Sbjct: 586 GWKIK 590 >UniRef50_C5KAQ6 DNA topoisomerase 2 n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5KAQ6_9ALVE Length = 1579 Score = 467 bits (1203), Expect = e-130, Method: Composition-based stats. Identities = 145/633 (22%), Positives = 260/633 (41%), Gaps = 74/633 (11%) Query: 10 IKVLKGLDAVRKRPGMYIGDTDDGT----------------------GLHHMVFEVVDNA 47 K + ++ + RP Y+G + T GL+ + E++ NA Sbjct: 19 YKKMTQIEHILARPDTYVGSLEHQTERMWVWESETGHIVQKQITFCPGLYKIFDEILVNA 78 Query: 48 IDEALAG--HCKEIIVTIHADNS-VSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKF 104 D H I V I A+N + V ++G+G+P IH E V E++ L + Sbjct: 79 ADNLQRDPKHMNTIKVDIDAENGFIKVYNNGKGLPIQIHKEHHVYVPELVFGHLLTSDNY 138 Query: 105 DDNSYKVSGGLHGVGVSVVNALSQKL--ELVIQREGKIHRQIYEHGV-PQAPLAVTGETE 161 DD KV+GG +G G + N S+K + K+++Q +E + + +T + Sbjct: 139 DDKEKKVTGGRNGYGAKLSNIFSKKFLITTADRTRKKLYKQQFEKSMQKKKEPVITDYDK 198 Query: 162 KTGTMVRFWPSLET--FTNVTEFEYEILAKRLRELSFLN--SGVSIRLRDKRDGKEDHFH 217 + T V+FWP LE T++ +++KR+ +++ + + L KR Sbjct: 199 EDFTCVQFWPDLEKFGMTHLDADIVSLMSKRVIDVAGTSASKKCKVYLNGKRVPI----- 253 Query: 218 YEGGIKAFVEYLNKNKTPIHPNI--------FYFSTEKDGI--GVEVALQWND----GFQ 263 K + E + P I Y S + EV + +D G Q Sbjct: 254 --SSFKDYAELYLTGEWVDAPKIYEKVARANVYVSCGHVQVSDRWEVLVTLSDPAGGGGQ 311 Query: 264 ENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVV 323 F N+I GGTH+ + +NA + K K + + + V Sbjct: 312 FQQVSFANSINTVKGGTHVNHVAEQI---VNAVLKKAQTKNKGGMELKPFQVKNHMWLFV 368 Query: 324 SVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARARE 383 + + +P F SQTK+ L K + ++E + +L + +V ++++ A+ ++ Sbjct: 369 NALIENPTFDSQTKETLTLKVAKFGSKCVLSEGTMKKVLSSG-----IVDQVVNWAKFKQ 423 Query: 384 AARRAREMT--RRKGALDLAGLPGKLADCQERDPA---LSELYLVEGDSAGGSAKQGRN- 437 A ++ G + G+P KL D + L L EGDSA A G Sbjct: 424 TATLQSKIKVGGTGGQTRIFGVP-KLEDANDAGGRYSDRCTLILTEGDSAKALAVAGLGV 482 Query: 438 --RKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 495 R + PL+GK+LNV +A + + + ++E+ ++ +G + LRY SI++ Sbjct: 483 IGRDKYGVFPLRGKVLNVREASYKQTVDNKEIQAILKIIGLEPRKAYDGVKGLRYGSIMV 542 Query: 496 MTDADVDGSHIRTLLLTFFYRQMPEIVE-RGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQ 554 MTD D+DGSHI+ LL+ + P +++ RG + P+ K KG++E ++ Sbjct: 543 MTDQDLDGSHIKGLLINLVHHWWPGLLQTRGFMKEFVTPIVKCVKGRRELSFFTLTEYEE 602 Query: 555 YQISIALDGATLHTNASAPALAGEALEKLVSEY 587 ++ + G + K +Y Sbjct: 603 WKRNNNDGKGWKIKYYKG---LGTSTSKEAQQY 632 >UniRef50_B0EP10 DNA topoisomerase 2 n=3 Tax=Entamoeba RepID=B0EP10_ENTDI Length = 1351 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 136/598 (22%), Positives = 241/598 (40%), Gaps = 71/598 (11%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTDDG---------------------------TGLHHM 39 L + + RP YIG + GL + Sbjct: 9 EDIYVKLSHKEQILTRPDTYIGSIERNDEQVWLYEEPTEQYEEGRMVQKVISLAPGLFKI 68 Query: 40 VFEVVDNAIDEALAGH-CKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVL 98 E++ NA D I VTI NS++V ++G+GIP IH +E + E+I L Sbjct: 69 YDEILVNASDNFQRDPKMTTIKVTIEG-NSITVYNNGKGIPIEIHKKENIYIPELIFGHL 127 Query: 99 HAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTG 158 + D+ KV+GG +G G + N S K + KI++Q +++ + Sbjct: 128 LTSSNYKDDDKKVTGGRNGYGAKLANIFSTKFSIETCDGKKIYKQTWKNNMSDKEEPEIE 187 Query: 159 ETEK--TGTMVRFWPSLET--FTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKED 214 +K T V F P + + + +L +R +++ N G I + K+ ++ Sbjct: 188 SVKKVEEYTKVTFTPDYKRFQMKGMEDDARRLLIRRAYDIAGCNPGKRIWINGKKVCFKN 247 Query: 215 HFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIP 274 + ++ +EK G ++ + + G I F N+I Sbjct: 248 F-------AEYARMYVGDEP--------IVSEKAGERWDICVCASKGEPMQI-SFVNSIN 291 Query: 275 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 334 GGTH+ MT+ L +K K + L V+ + +P F S Sbjct: 292 TSHGGTHVDYVTGLMTKYL---AEKMKKLNKKGAEIKPFQIKNHLFVFVNSLIENPAFDS 348 Query: 335 QTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRR 394 QTK+ L + K + +++ + ++ ++D A + ++ + Sbjct: 349 QTKETLKTQVNKFGSKPTLSDKFFK---------ELGKLSVVDDILAWAIKKGEMDLNKS 399 Query: 395 --KGALDLAGLPGKLADCQE---RDPALSELYLVEGDSAGGSAKQGRN---RKNQAILPL 446 K + G+P KL D + ++ L L L EGDSA A G + R + PL Sbjct: 400 GGKKTARITGIP-KLDDANKAGTKEGNLCTLILTEGDSAKTLAVSGLSVVGRDYYGVFPL 458 Query: 447 KGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHI 506 +GK LN + K+ +QE + +G G+ + ++LRY S++IM D D DGSHI Sbjct: 459 RGKPLNAREIAPSKVKENQEFENIAKIMGLRYGKVYSSINELRYGSVMIMADQDFDGSHI 518 Query: 507 RTLLLTFFYRQMPEIVE-RGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563 + LL+ +F+ P +++ + P+ KVK+GKQE ++++ + +G Sbjct: 519 KGLLINYFHTFWPSLLKIDNFLVEFITPIVKVKRGKQEISFFTLPQFNEWKDARIQEG 576 >UniRef50_Q7YZS4 DNA topoisomerase 2 n=1 Tax=Physarum polycephalum RepID=Q7YZS4_PHYPO Length = 1498 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 136/624 (21%), Positives = 238/624 (38%), Gaps = 91/624 (14%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTDDG----------------------TGLHHMVFEVV 44 + ++ + RP YIG GL+ + E++ Sbjct: 320 EEMYQKKTPVEHILLRPDSYIGSIQHTHQEQWVINESDGRMEYRECKYVPGLYKIFDEIL 379 Query: 45 DNAIDEALAGH-CKEIIVTIHA-DNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGG 102 NA D H + VTI +N +S+ ++G+GIP +H +E V E+++ L G Sbjct: 380 VNAADNKQRDHKMNVLQVTIDPANNIISILNNGKGIPVQLHEKEKVYVPELVLGTLLTGS 439 Query: 103 KFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQR--EGKIHRQIYEHGVPQAPLAVT--- 157 FDD KV+GG +G G + N S E+ K++RQ + + Q Sbjct: 440 NFDDKIAKVTGGRNGFGAKLTNIFSTSFEVETADAARHKLYRQSWSENMSQRTEPSIEHY 499 Query: 158 -GETEKTGTMVRFWPSLETFTNVTEFEYEIL---AKRLRELSFLNSGVSIRLRDKRDGKE 213 G T + F P L F + +IL +R+ +++ V + L Sbjct: 500 SGPKGSDYTRITFSPDLAKFNMQSLENGDILRLMKRRIYDMAACLPSVQVSLNGIPIP-- 557 Query: 214 DHFHYEGGIKAFVEYLN-KNKTPI------------------------------HPNIFY 242 G A+V K+ P+ + F Sbjct: 558 ------SGFDAYVSMYQPKDAQPLSNAEDGAQNEQEEHGEGAEGTEGEQPGKQPTKHPFV 611 Query: 243 FSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGY 302 ++ D V V L +G Q + F N+I GGTH+ + + ++ + K Sbjct: 612 YAKINDRWQVAVGLTMLEG-QFSQVSFVNSIATSKGGTHVNHVAEQVVKAIHERITK--- 667 Query: 303 SKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLL 362 K + R L V+ + +P F SQTKD L + + + + ++ Sbjct: 668 -KYPDLDTRPAHIRNNLFVFVNCLIENPAFDSQTKDTLTTRPAHFGSACDLPDSFLKRIV 726 Query: 363 ENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERD---PALSE 419 ++ K++ A+ ++ A + TR+ KL D + Sbjct: 727 AQV----PIIDKVVGWAKLKQMAEFEKSSTRKPKDKAGIKAIPKLDDANFAGGPRSSECT 782 Query: 420 LYLVEGDSAGGSAKQGRN---RKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGC 476 L + EGDSA A G + R + PL+GK+LNV +++ ++E+ L LG Sbjct: 783 LIITEGDSAKSLAVSGLSIVGRDKYGVFPLRGKLLNVRDQSPKRVMENEELKHLRMILGL 842 Query: 477 GIGRDE---YNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVER-GHVYIAQP 532 G++ + +LRY +++MTD D DGSHI+ L + F + P ++E+ G + Sbjct: 843 TPGKEYRTAEDRAELRYGKVMLMTDQDHDGSHIKGLFVNFMIQFWPSLLEQDGFLEQFIT 902 Query: 533 PLYKVKKGKQEQYIKDDEAMDQYQ 556 P+ K G + Q + ++ Sbjct: 903 PIVKAFHGAEVQTFYTTSEYEIWR 926 >UniRef50_Q1NK64 DNA topoisomerase II:ATP-binding region, ATPase-like n=3 Tax=Bacteria RepID=Q1NK64_9DELT Length = 614 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 186/610 (30%), Positives = 307/610 (50%), Gaps = 50/610 (8%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGT----GLHHMVFEVVDNAIDEALAGHCK 57 S YD S IK L L+ +R RPGMYIG +G+ G++ ++ EV+DN +DE + G + Sbjct: 5 SAVYDESKIKTLSSLEHIRMRPGMYIGRLGNGSHPDDGIYILLKEVIDNGVDEFIMGAGR 64 Query: 58 EIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHG 117 I + + DN V+++D GRGIP G E + +V++ G K++ ++++ S GL+G Sbjct: 65 AIDIALADDNVVTIRDYGRGIPLGK-------LVECV-SVINTGAKYNTDAFQFSVGLNG 116 Query: 118 VGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFT 177 VG VNA+S + + R+G+ R + GV E GT+V F P E F Sbjct: 117 VGTKAVNAMSSRFVVTSFRDGEFARAKFARGVLVNE-ESGRSREPNGTLVEFRPDGEMFP 175 Query: 178 NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIH 237 F + + +RL+ S+LN+G+++ + F+ E G+ + T ++ Sbjct: 176 EYA-FNRDFIRRRLKRYSYLNAGLTLNFDGE------SFYSENGLLDLLASETSG-TSLY 227 Query: 238 PNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYM 297 I++ VE A DG+ E+ + F N +GGTHL+ FR + + +N Y Sbjct: 228 EPIYHREK-----TVEFAFSHTDGYGESYFSFVNGTYTAEGGTHLSAFREGLLKGVNEYA 282 Query: 298 DKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELL 357 K+ G D REG++ V+VKV +P F SQTK+KL +++++ + + E + Sbjct: 283 GKK---------FDGADVREGVVGAVAVKVREPIFESQTKNKLGNADIRGEIVTAVREAV 333 Query: 358 AEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQ------ 411 + +L +N A++V+ KI +AR R+ + R+ + K +P +L DC+ Sbjct: 334 SAFLYKNTDIAELVIDKIQQSARVRKELQHVRKEAKAKARKVALKIP-QLKDCKYHPAPG 392 Query: 412 --ERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 + ++L EG SA GS R+ QA+ LKGK LNV + + E+ Sbjct: 393 KPSPAGRENMVFLTEGQSASGSIVSARDPMTQAVFSLKGKPLNVFGQPMALLYKNDEMYN 452 Query: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 ++ AL E + +LR+ III TDADVDG HIR LLLTFF +V+RGHVYI Sbjct: 453 IMRALDV-----EESIGRLRFDKIIIATDADVDGLHIRNLLLTFFLHYFESLVKRGHVYI 507 Query: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLH-TNASAPALAGEALEKLVSEYN 588 + P+Y+V+ +Q Y ++ + +A G T + GE K ++ Sbjct: 508 LETPIYRVRNKEQTFYCYTEKERREADQKLAGRGKTRRPVEVTRFKGLGEISPKEFKQFI 567 Query: 589 ATQKMINRME 598 ++ + +++ Sbjct: 568 GSEMRLQQVD 577 Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 45/103 (43%), Gaps = 8/103 (7%) Query: 699 GLLEEDAFIERGERRQPVASFEQALDWLVKE------SRRGLSIQRYKGLGEMNPEQLWE 752 +LE + R + + E+ ++ +RR + + R+KGLGE++P++ + Sbjct: 506 YILETPIYRVRNKEQTFYCYTEKERREADQKLAGRGKTRRPVEVTRFKGLGEISPKEFKQ 565 Query: 753 TTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEEN 795 + E R + +V + ++ MG RR +I + Sbjct: 566 -FIGSEMR-LQQVDIDTLSEVPRVLEFYMGKNTPSRREYIMSH 606 >UniRef50_B1ZME3 DNA topoisomerase type IIA subunit B region 2 domain protein n=42 Tax=Bacteria RepID=B1ZME3_OPITP Length = 629 Score = 461 bits (1185), Expect = e-128, Method: Composition-based stats. Identities = 183/611 (29%), Positives = 288/611 (47%), Gaps = 60/611 (9%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGT----GLHHMVFEVVDNAIDEALAGHC 56 M+ +Y +SIK L + +R RPGMYIG +G G++ ++ E +DN+IDE G+ Sbjct: 18 MAQAYTEASIKTLSSTEHIRLRPGMYIGRLGNGAHAEDGIYVLLKESIDNSIDEFTMGYG 77 Query: 57 KEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 116 ++I + + D V V+D GRGIP G E + ++++ G K+D ++K + GL+ Sbjct: 78 RKIEIELQ-DRMVRVRDYGRGIPLGK-------VLECV-SIINTGAKYDSETFKKAVGLN 128 Query: 117 GVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETF 176 GVG VNALS R+G+ + G + + TE+ GT++ F P F Sbjct: 129 GVGQKAVNALSFSYRAQAFRDGQTKLVEFAQGKLRKDHKIAKTTERNGTLIEFTPDEALF 188 Query: 177 TNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPI 236 +F E + L +FLN G+++ K F E G+K ++ N + P+ Sbjct: 189 GKDFKFRPEFIEDMLWNYAFLNRGLTLTFNGK------AFRSENGLKDLLQK-NLSGEPL 241 Query: 237 HPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAY 296 +P I + E +EVA + E Y F N GGTHLA FR A+ T+ + Sbjct: 242 YP-IIHLEGED----MEVAFTHGAHYGEEYYSFVNGQHTTMGGTHLAAFREALVETVRNF 296 Query: 297 MDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS-------SEVKSAV 349 + D R+ + A VSV+V +P F SQTK KL S ++ + Sbjct: 297 FKR---------DYDAADVRQSIDAAVSVRVMEPVFESQTKTKLGSTDIAPGGPSIRDFI 347 Query: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTR---RKGALDLAGLPGK 406 + + + L YL +N A + KI ++ R R+ R + R +K +L K Sbjct: 348 GKFVQQSLDGYLHKNRETADALRNKIEESERERKELAGIRSLARERAKKASLHNR----K 403 Query: 407 LADCQ------ERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 460 L DC+ S L++VEGDSA GS R+ + QA+ LKGK LN Sbjct: 404 LRDCRLHLGDRNERAEESTLFIVEGDSAAGSLTATRDVQTQAVFALKGKPLNTFGLSKKV 463 Query: 461 MLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPE 520 + ++E L +AL E + D LRY+ ++I TDADVDG HIR LL++FF + P+ Sbjct: 464 IYENEEFHLLQSALNV-----EDSMDGLRYNRVVIATDADVDGMHIRLLLISFFLQFFPD 518 Query: 521 IVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEAL 580 ++ GH++I + PL++V+ K+ Y +E + AGE Sbjct: 519 LIRNGHLFILETPLFRVRNKKETIYCYSEEEKQAAMKKLGASHEITRFKGLGEISAGE-F 577 Query: 581 EKLVSEYNATQ 591 + + E + Sbjct: 578 KDFIGEAMRLE 588 Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 2/103 (1%) Query: 700 LLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPES 759 +LE F R ++ E+ +K+ I R+KGLGE++ + + E+ Sbjct: 527 ILETPLFRVRNKKETIYCYSEEEKQAAMKKLGASHEITRFKGLGEISAGEFKDFI--GEA 584 Query: 760 RRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANI 802 R+ VT+ +++L MG R+ FI +N ++ Sbjct: 585 MRLEPVTLAHLNDSNELLGFFMGKNTPERQDFIIDNLKVEKDL 627 >UniRef50_Q55BP5 Probable DNA topoisomerase 2 n=1 Tax=Dictyostelium discoideum RepID=TOP2_DICDI Length = 1521 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 146/593 (24%), Positives = 258/593 (43%), Gaps = 63/593 (10%) Query: 10 IKVLKGLDAVRKRPGMYIGDTDDG--------------------TGLHHMVFEVVDNAID 49 + + LD + RP YIG T+ G++ + E++ NA D Sbjct: 107 YQKKELLDQILLRPDTYIGSTERQEEELWVWEDKRMVHRKVSFVPGIYKIFDEILVNAAD 166 Query: 50 EALA-GHCKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDN 107 G+ K I V I + +SV +DG GIP +H E + E+I L +DD+ Sbjct: 167 NKQREGNMKFIKVVIDREKGFISVTNDGAGIPIQVHSEHKIYIPELIFGNLLTSSHYDDS 226 Query: 108 SYKVSGGLHGVGVSVVNALSQKL--ELVIQREGKIHRQIYEHGV--PQAPLAVTGETEKT 163 +++GG +G G + N S K E + K+++Q + + + + P + + + Sbjct: 227 EKRLTGGRNGFGAKLANIFSTKFIVECADSKSKKLYKQTFTNNMRSKEDPKITSYQNKTD 286 Query: 164 GTMVRFWPSLETFTNVTEFEYEI---LAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEG 220 T + F+P L+ F + EF+ ++ L+KR+ +++ N + + L D+ E Sbjct: 287 YTKITFYPELDRFG-MVEFDDDLVALLSKRVYDIAGCNPTLKVSLNDE----------EL 335 Query: 221 GIKAFVEYLNKN--KTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDG 278 GI++F +Y+N P ++Y EK E+A+ + Q N F N+I G Sbjct: 336 GIRSFEKYINLYFPDEENAPKVYY---EKVSDRWELAVTLSKESQFNQVSFVNSICTVKG 392 Query: 279 GTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKD 338 GTH+ + + + ++K+ K + L V+ + +P F SQTK+ Sbjct: 393 GTHVTHALSNIVTAIQEQVNKKN---KGSADIKPAFIKNHLSVFVNCLIENPHFDSQTKE 449 Query: 339 KLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGAL 398 L S + +E + +L++ + +V I++ A+ ++ + R T G Sbjct: 450 TLTSKISSFGSRCEPSEKFIKRVLDSKSG---IVASILEFAQFKDQSALKRS-TSSGGKK 505 Query: 399 DLAGLPGKLADCQ---ERDPALSELYLVEGDSAGGSAKQGRN---RKNQAILPLKGKILN 452 +P KL D L L EGDSA A G + + + PLKGK+LN Sbjct: 506 GKVSIP-KLDDANLAGGTKSEDCTLILTEGDSAKSLATAGISVVGKDHYGAFPLKGKLLN 564 Query: 453 VEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLT 512 V K++++ E+ ++T LG G+ LRY ++IMTD D DGSHI+ L++ Sbjct: 565 VRDQS-TKVINNDEINNIVTILGLKYGKVYETLSDLRYGHLMIMTDQDHDGSHIKGLIIN 623 Query: 513 FFYRQMPEIVER-GHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGA 564 + P ++ G + P+ KV K Q+ M ++ + Sbjct: 624 MVHHFWPTLLRMPGFLVEFITPIVKVFKNNQKP--ISFYTMPEFLKWRETNDK 674 >UniRef50_A6TSS9 DNA gyrase, subunit B domain protein n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TSS9_ALKMQ Length = 680 Score = 456 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 179/597 (29%), Positives = 291/597 (48%), Gaps = 29/597 (4%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Y + SI L ++ VR RP + G D TG H V E V N++DEA G K I V Sbjct: 6 KQEYGNESISSLTEIEKVRLRPQVIFGS-DGITGSRHTVDETVANSVDEAKEGFGKLIKV 64 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNS---YKVSGGLHGV 118 D S+SVQD RGIP + +E E++ L+AGGK++ NS Y+ S GL+G+ Sbjct: 65 KRFKDRSISVQDFARGIPVEFNSKENKYNWELVFCTLYAGGKYNTNSGESYEYSKGLNGL 124 Query: 119 GVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPL-AVTGETEKTGTMVRFWPSLETFT 177 G + S+ ++++++R+G + +E G L + E TGT + + P L+ FT Sbjct: 125 GTTATQFASEYMDVLVRRDGYEYTLRFEKGENIGGLQKKKCDYESTGTTITWKPDLDVFT 184 Query: 178 NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIH 237 ++ E + L+ + +N G++ L D+ + ++YE GI ++E +N K Sbjct: 185 DI-NIPLEFYQELLKRQAIVNKGITFELYDEASEENFTYYYEKGIVDYIEEINGGKEL-- 241 Query: 238 PNIFYFSTEKDG----------IGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRA 287 ++ Y E G + EVA +N+ +I + N+ GG ++ Sbjct: 242 SSVQYIELETKGRDRADKPEYKVKAEVAFAFNN-HASHIEYYHNSSYLEYGGAPDKAVKS 300 Query: 288 AMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKS 347 A + Y+ KK + A D + L+ + + F +QTK + + ++S Sbjct: 301 AFLSAIEQYLKNNNLYKKDEKRAIFADIEDSLVLISNSYSTLTSFENQTKRAISNVFIQS 360 Query: 348 AVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRK--GALDLAGLPG 405 A+ + E L Y +EN +A + +II R+RE+A + R ++K + A Sbjct: 361 ALTDFLKEKLQIYFIENKVEADKIANQIIINKRSRESAEKTRINVKKKLESPSNFANKVA 420 Query: 406 KLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQ 465 K DC+ +D + ELY+VEGDSA GS KQGR+ + QAI+P++GKILN KA+ D + + Sbjct: 421 KFVDCKTKDKSKRELYIVEGDSAMGSTKQGRDSEFQAIMPVRGKILNCLKAKLDNIFNDS 480 Query: 466 EVATLITALGCGIGRDEYN--------PDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQ 517 + L+ L CGI N DKL + +II TDADVDG IRTL+L YR Sbjct: 481 VIVDLLKVLSCGIEIKSKNNTDLYTFELDKLNWDKVIICTDADVDGYQIRTLILAMLYRL 540 Query: 518 MPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPA 574 +P ++ G VYIA+ PL+++ + + + + ++ + Sbjct: 541 VPTLLREGKVYIAETPLFEIISTTLPKLTDKQKDGITFVENKGDKNYSIFVYSDQQR 597 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 37/98 (37%), Positives = 64/98 (65%), Gaps = 2/98 (2%) Query: 709 RGERRQPVASF-EQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTV 767 +G++ + + +Q D++V + + +IQR KGLGE PE +W+TTM+P++R++++VT+ Sbjct: 582 KGDKNYSIFVYSDQQRDFVVSKLKGKYAIQRSKGLGENEPEMMWQTTMNPQTRKLIQVTM 641 Query: 768 KDAIAADQLFTTLMGDAVEPRRAFIEENALKA-ANIDI 804 DA AD +F L+G+ +E R+ I EN K ID+ Sbjct: 642 SDAQKADDVFDLLLGNNLEGRKVHIAENGHKYLEQIDV 679 >UniRef50_P41001 DNA topoisomerase 2 n=10 Tax=Eukaryota RepID=TOP2_PLAFK Length = 1398 Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 140/651 (21%), Positives = 255/651 (39%), Gaps = 101/651 (15%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTDDGT----------------------GLHHMVFEVV 44 + ++ + RP YIG + T GL+ + E++ Sbjct: 8 EERYQKKSQIEHILLRPDTYIGSVEMHTQLLWVWNKEKNRMVQKNITYVPGLYKIFDEII 67 Query: 45 DNAID------EALAGHCKEIIVTIHADNS-VSVQDDGRGIPTGIHPEEGVSAAEVIMTV 97 NA D E I + I+ +N +SV +DG GIP IH E + +I Sbjct: 68 VNAADVKAREKEKSENPMTCIKIEINKENKRISVYNDGEGIPVDIHKEMNIYVPHMIFGE 127 Query: 98 LHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELV--IQREGKIHRQIYEHGVPQ-APL 154 L +DD +++GG +G G + N S++ + K + + + + + Sbjct: 128 LLTSDNYDDAEDRITGGRNGFGAKLTNIFSKEFIVQCGDSSRKKEFKMTWSDNMSKFSEP 187 Query: 155 AVTGETEKTGTMVRFWPSLET--FTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK 212 + K V F P L T + + +L KR+ +L+ S V + L +R Sbjct: 188 HIKNYNGKDYVKVTFKPDLNKFGMTEMDDDIESLLFKRVYDLAGTCS-VRVYLNGQRLAV 246 Query: 213 EDHFHYEGGIKAFVE----------------------------------YLNKNKTPIHP 238 +D ++ + +++ ++ + P Sbjct: 247 KD---FKSYVDLYLKDNSNDNKNNKGQNDNNNNNNNNNDENANQNNDNLDVSLSNEPADG 303 Query: 239 NI--------------FYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAG 284 + E+ + +DG Q F N+I GG+H+ Sbjct: 304 TPTKNNNNNNNNNDEDEIVKIHEKQHRWEIVVSKSDGSQFQQVSFVNSICTTKGGSHVNY 363 Query: 285 FRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSE 344 + L++ K K + R L V+ + +P F SQTK+ L + Sbjct: 364 IVEQL---LSSLSKKANAKNKGGMEIKSGHIRNHLWVFVNCLIVNPTFDSQTKETLTTKP 420 Query: 345 VKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLP 404 VK + +++ +L++P + I++ A+A+ ++ + K + G+P Sbjct: 421 VKFGSKCILSDKTINNVLKSPILSNILLW---AQAKAQVELKKKMKAGSSKARERIIGIP 477 Query: 405 GKLADCQ---ERDPALSELYLVEGDSAGGSAKQGRN---RKNQAILPLKGKILNVEKARF 458 KL D + L L EGDSA S G + R + PLKGK+LNV A F Sbjct: 478 -KLEDANDAGSKYSQECTLILTEGDSAKTSCLAGLSIVGRDKYGVFPLKGKLLNVRDASF 536 Query: 459 DKMLSSQEVATLITALGCGI-GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQ 517 +++ ++E+ + +G I +++ + LRY S++IMTD D DGSHI+ LL+ ++ Sbjct: 537 KQLMDNKEIQNIFRIMGLDITDKNKDDIKGLRYGSLMIMTDQDYDGSHIKGLLINMIHKF 596 Query: 518 MPEIVER-GHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLH 567 P +++ G + P+ KV+KG QE +Q++ + L G + Sbjct: 597 WPSLLKHKGFLSEFVTPIVKVQKGSQEYSFFTIAEYEQWKENTNLLGWKIK 647 >UniRef50_A7TEE2 DNA topoisomerase 2 n=1 Tax=Vanderwaltozyma polyspora DSM 70294 RepID=A7TEE2_VANPO Length = 1404 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 140/663 (21%), Positives = 268/663 (40%), Gaps = 72/663 (10%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTD----------------------DGTGLHHMVFEVV 44 S + + L+ + KRP YIG + GL + E++ Sbjct: 9 SERYQKISQLEHILKRPDTYIGSVEVQEQEQWIYNVENESLEEKQVKIVPGLFKIFDEIL 68 Query: 45 DNAIDEALAGH-CKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGG 102 NA D + K I V I+ + N + +++DG+GIP IH +E + E+I L Sbjct: 69 VNAADNKVRDPSMKRIDVNINPEENLIEIKNDGKGIPIEIHDKEKIYIPELIFGHLLTSS 128 Query: 103 KFDDNSYKVSGGLHGVGVSVVNALSQKL--ELVIQREGKIHRQIYEHGVPQA--PLAVTG 158 +DD+ KV+GG +G G + N S + E GK + Q +E + P + Sbjct: 129 NYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADPSTGKKYIQRWEDNMNTCHPPKITSY 188 Query: 159 ETEKTGTMVRFWPSLETFT--NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHF 216 + + T V F P L+ F + + ++ +R+ +++ +++ L K + Sbjct: 189 KNSTSYTKVSFKPDLKRFKMEKLDDDVVGVMRRRVYDINGSVRDINVYLDGKPLKIRN-- 246 Query: 217 HYEGGIKAFVEYLNKNKTPI---------HPNIFYFSTEKDGIGVEVALQWNDGFQENIY 267 ++ ++ +++ L K K P I Y EK EVA ++ Sbjct: 247 -FKSYVELYLKSLEKKKLTESGESTEDLQTPTILY---EKVNDRWEVAFSSSEA-SFQQV 301 Query: 268 CFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKV 327 F N+I GGTH+ + + ++ + K+ +K + + + ++ + Sbjct: 302 SFVNSIATTSGGTHVNYITDQIVKKVSEAIKKK-----SKKTVKPFQIKNNMFIFINSLI 356 Query: 328 PDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARR 387 +P F+SQTK++L + + +++ + +++ KI+D A + Sbjct: 357 ENPAFTSQTKEQLTTRVRDFGSKCELSNVFINKIMKTD-----FFDKILDVANQNDQNAL 411 Query: 388 AREMTRRKGALDLAGLPGKLADCQE---RDPALSELYLVEGDSAGGSAKQGR---NRKNQ 441 + RK + KL D + ++ L L EGDSA A G R Sbjct: 412 KKSDGTRKIRITE---YPKLEDANKAGTKEGHKCTLILTEGDSALSQAVLGLTVVGRDYF 468 Query: 442 AILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADV 501 PL+GK+LNV +A D++ + E+ + +G + + LRY ++IMTD D Sbjct: 469 GCYPLRGKMLNVREASADQINKNAEIEAIKKIMGLQHKKKYEDTKSLRYGHLMIMTDQDH 528 Query: 502 DGSHIRTLLLTFFYRQMPEIVERG-HVYIAQPPLYKVKKG---KQEQYIKDDEAMDQYQI 557 DGSHI+ L++ F P ++ + P+ KVK KQ + ++++ Sbjct: 529 DGSHIKGLIINFLETSFPGLLNIPEFLQEFITPIIKVKISKPRKQTIQFYNIPDYEKWRD 588 Query: 558 SIALDGATLHTNASAPALA-GEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLT 616 + H + G+ + ++ + K+ ++++ L EL + Sbjct: 589 EEGQNCTWKHKYYKGLGTSLGQEFREYFADLDRHLKIFHQLQE--DDKKLIELAFSKKKA 646 Query: 617 EAD 619 + Sbjct: 647 DDR 649 >UniRef50_P90520 DNA topoisomerase 2, mitochondrial n=1 Tax=Dictyostelium discoideum RepID=TOP2M_DICDI Length = 1284 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 137/566 (24%), Positives = 249/566 (43%), Gaps = 38/566 (6%) Query: 23 PGMYIGDTDD--GTGLHHMVFEVVDNAIDEALAGH-CKEIIVTIHA-DNSVSVQDDGRGI 78 P YI GL + E++ NA D I V I+ +NS+S+ +DG+GI Sbjct: 158 PLTYIHPIKATYIPGLLKIYDEILVNAADNKKRDSKMSFIKVEINPNENSISIMNDGKGI 217 Query: 79 PTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELV--IQR 136 P +H E E++M L +G F+D+ KV GG +G G + N S++ + + Sbjct: 218 PVVMHQTENCYVVEMVMGNLMSGSNFNDSELKVVGGRNGFGAKLTNIFSKEFTVETVDKS 277 Query: 137 EGKIHRQIYEHGVPQAPLAVT---GETEKTGTMVRFWPSLETFTNVTEFEYEIL---AKR 190 GK + Q + + + + GE E T + F P LE F + ++ IL +R Sbjct: 278 SGKKYFQRWSNNMGDRSEPIITPIGEGESDYTKITFKPDLEKFKIKSLWDDNILQLMERR 337 Query: 191 LRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFY----FSTE 246 L +++ N+ + + L KR ++++ +K + +LN + Y F Sbjct: 338 LYDIAGCNTELMVTLNGKRLN----YNFQSYVKLYEHHLNNSTKREDNEEQYREESFEFG 393 Query: 247 KDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKA 306 + ++ + ++ Q F N+I GGTH+ + R Y+ ++ K + Sbjct: 394 EISPRWKIGIGLSETGQFTQVSFVNSINTVKGGTHVNFLADQIVR----YVGEKLKKKHS 449 Query: 307 KVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPT 366 + + + L V+ V +P F SQ+K+ L + + ++ E L ++N Sbjct: 450 DLEIRPMNIKHHLALFVNCLVDNPSFDSQSKETLTTKPMLFGSTPEIPESLLAQFVKNS- 508 Query: 367 DAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERD---PALSELYLV 423 ++ ++ A ++ A + R+ L KL D L + Sbjct: 509 ---KIIERVAGWALMKQKADLIHSTSGRQSKTTLIKSISKLDDANWAGGLKSKECTLIIT 565 Query: 424 EGDSAGGSAKQGRN---RKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR 480 EGDSA A G + R + + PL+GK+LNV ++LS++E+ L T LG Sbjct: 566 EGDSAKSLALAGLSVVGRNSYGVFPLRGKLLNVRDVASKQLLSNEEINNLTTILGLSHKN 625 Query: 481 DE---YNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKV 537 + + LRY ++IM D D DGSHI+ L++ F + P +++RG + P+ K Sbjct: 626 SYDTDESMEDLRYGRVMIMADQDHDGSHIKGLVMNFIHYFWPNLLKRGFLVEFVTPIIKA 685 Query: 538 KK-GKQEQYIKDDEAMDQYQISIALD 562 K Q++ + ++++ +I+ D Sbjct: 686 TKSSTQKKSFFTIKDYEKWRETISSD 711 >UniRef50_P06786 DNA topoisomerase 2 n=27 Tax=Fungi/Metazoa group RepID=TOP2_YEAST Length = 1428 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 140/625 (22%), Positives = 250/625 (40%), Gaps = 61/625 (9%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTDDG----------------------TGLHHMVFEVV 44 S + + L+ + KRP YIG + GL + E++ Sbjct: 9 SDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEIL 68 Query: 45 DNAIDEALAGH-CKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGG 102 NA D + K I V IHA+ +++ V++DG+GIP IH +E + E+I L Sbjct: 69 VNAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSS 128 Query: 103 KFDDNSYKVSGGLHGVGVSVVNALSQKL--ELVIQREGKIHRQIYEHGVPQA--PLAVTG 158 +DD+ KV+GG +G G + N S + E G+ + Q +E+ + P + Sbjct: 129 NYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPPKITSY 188 Query: 159 ETEKTGTMVRFWPSLET--FTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHF 216 + + T V F P L + ++ +R+ +++ +++ L K + Sbjct: 189 KKGPSYTKVTFKPDLTRFGMKELDNDILGVMRRRVYDINGSVRDINVYLNGKSLKIRN-- 246 Query: 217 HYEGGIKAFVEYLNKNKT-------PIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCF 269 ++ ++ +++ L K + +I E+ EVA +D F Sbjct: 247 -FKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYERINNRWEVAFAVSD-ISFQQISF 304 Query: 270 TNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPD 329 N+I GGTH+ + + E KK K S + + ++ + + Sbjct: 305 VNSIATTMGGTHVNYITDQIVKK-----ISEILKKKKKKSVKSFQIKNNMFIFINCLIEN 359 Query: 330 PKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAR 389 P F+SQTK++L + ++ +++ ++ + A A E + Sbjct: 360 PAFTSQTKEQLTTRVKDFGSRCEIPLEYINKIMKTDLATRMF-----EIADANEENALKK 414 Query: 390 EMTRRKGALDLAGLPGKLADCQE---RDPALSELYLVEGDSAGGSAKQGR---NRKNQAI 443 RK + KL D + ++ L L EGDSA A G R Sbjct: 415 SDGTRKSRITN---YPKLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGC 471 Query: 444 LPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDG 503 PL+GK+LNV +A D++L + E+ + +G + + LRY ++IMTD D DG Sbjct: 472 YPLRGKMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMIMTDQDHDG 531 Query: 504 SHIRTLLLTFFYRQMPEIVE-RGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALD 562 SHI+ L++ F P +++ +G + P+ KV K + M Y+ + Sbjct: 532 SHIKGLIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEKWREEE 591 Query: 563 GATLHTNASAPALAGEALEKLVSEY 587 G +L + V EY Sbjct: 592 SHKFTWKQKYYKGLGTSLAQEVREY 616 >UniRef50_B7G2K9 DNA topoisomerase 2 (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7G2K9_PHATR Length = 1165 Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 155/723 (21%), Positives = 268/723 (37%), Gaps = 76/723 (10%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHM--------------------VFEVVDN 46 L+ V RP MY+G + + E++ N Sbjct: 2 EDQYSRKTPLEHVLLRPSMYVGSNEKAQPIACWVPDPIPTPPTEELLMKTTSVFDEILVN 61 Query: 47 AIDEALAGH--CKEIIVTIHA-----DNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLH 99 A D C I V I D + V++DG+GIP +H +EG+ E++ L Sbjct: 62 AADNLQRHPDSCTRIDVIIDPGSDNRDPFIRVRNDGKGIPVQVHQKEGMYVPEMLFGHLL 121 Query: 100 AGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELV--IQREGKIHRQIYEHGVPQA--PLA 155 G FDDN +++GG HG G + N S+ + R+ +RQ + + A P Sbjct: 122 TGSNFDDNEKRLTGGRHGFGAKLTNIFSKSFTVETLDSRKRLKYRQTWSSNMTNASSPEI 181 Query: 156 VTGETEKT-GTMVRFWPSLETFTN------VTEFEYEILAKRLRELSFLNSGVSIRLRDK 208 V + T T V F P + TN +++ +Y ++ +R+ +++ ++G RLR Sbjct: 182 VEVPADATDYTCVSFVPDVARLTNDASALSISKEDYALMCRRVLDVAGCSAG---RLRVT 238 Query: 209 RDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYC 268 +G + G + K + F V V L F+ + Sbjct: 239 LNGVDVTM---GSFPDYARLYRKQDSL----PVCFDAINSRWTVGVGLSETGSFE--MVS 289 Query: 269 FTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVP 328 F N + GGTH+ + + + ++K + A+ R L V+ + Sbjct: 290 FVNGMATSRGGTHVNSILQQVIKKIQEKIEKTD--PELVQMASQGVIRRHLFVSVAALIE 347 Query: 329 DPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKI-VVGKIIDAARAREAARR 387 +P F SQ K+ L SS ++E + +L++ + +V +I AA++R+ A Sbjct: 348 NPTFDSQMKECLTSSPADFGSSFSLSESFIKSVLQSEEEGGPGIVEEIRRAAQSRQQATL 407 Query: 388 AREMTRRKGALDLAGLPGKLAD---CQERDPALSELYLVEGDSAGGSAKQGR---NRKNQ 441 + + + L +P KL D + + L L EGDSA A G R Sbjct: 408 LKVIGGKTSKRQLLSIP-KLEDAHHAGTKSGSECTLILTEGDSAKALAVAGLEVIGRARY 466 Query: 442 AILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPD---KLRYHSIIIMTD 498 + PL+GK+LNV +A +M + EV L +G + + KLRY +++MTD Sbjct: 467 GVFPLRGKLLNVREAAVSQMAKNAEVTALCAIIGLDFDKTYETIEERRKLRYGKVMLMTD 526 Query: 499 ADVDGSHIRTLLLTFFYRQMPEIVE-------------RGHVYIAQPPLYKVKKGKQEQY 545 D DGSHI+ L++ FF P +++ + PL K K + Sbjct: 527 QDTDGSHIKGLVMNFFRYFWPNLLKPPVDLQVNDEDETPPFLSSFVTPLLKASKKSSKTG 586 Query: 546 IKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAM 605 +M +Y+ A + G + + Sbjct: 587 TLSFYSMAEYKKWRGSIEAEDFKKWTVKYYKGLGTSTPAEAREYFSAFNDHFRPFLWNSD 646 Query: 606 LKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVR 665 + + +D + V S L + G+ ++ N E F Sbjct: 647 IDGELLDMVFDGERAADRRAWILDVYDETSNLLNDPSAGNNVSYEDFINKEMIHFSNADN 706 Query: 666 VRT 668 +R+ Sbjct: 707 IRS 709 >UniRef50_Q8GD47 DNA gyrase subunit B (Fragment) n=21 Tax=Bacteria RepID=Q8GD47_9MOLU Length = 393 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 182/394 (46%), Positives = 256/394 (64%), Gaps = 6/394 (1%) Query: 109 YKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHG-VPQAPLAVTGETEKTGTMV 167 YKVSGGLHGVG SVVNALS +++VI+REGK ++ G Q LA+ GE+ KTGT V Sbjct: 1 YKVSGGLHGVGASVVNALSLYVDVVIEREGKKFHMLFSDGGTAQTELAIIGESNKTGTTV 60 Query: 168 RFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVE 227 RF P E F F+Y + ++++L++LN G+ I L D+R K FH+ GI ++ Sbjct: 61 RFKPDPEIFKETVTFDYTTIRNKVKQLAYLNKGLKISLNDERINKSVDFHFPNGIVDYIR 120 Query: 228 YLNKNKTPIHPNIFYFST----EKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLA 283 N+ K I+P IFY ++ I VE+ALQ+N + EN+ F NNI +GG H Sbjct: 121 EENETKAKINPTIFYVDGKEAGDEGDIEVEIALQYNSEYNENLITFVNNINTHEGGAHED 180 Query: 284 GFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSS 343 G R A+ R +N Y +K K + DD +EG+I ++S++ DP+F QTK KL + Sbjct: 181 GLRQALVRIINRYAEKVAQQNKQPQKFSWDDIKEGMICILSIRHTDPQFEGQTKTKLANP 240 Query: 344 EVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGL 403 + K V+ + + E+L ENP DAK ++ K ++A +AR AA+RARE TRRKGALD L Sbjct: 241 DAKRVVDAILGKSFEEFLFENPNDAKAILDKNVNAQKARIAAQRAREETRRKGALDTFSL 300 Query: 404 PGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLS 463 PGKLADC+ D ++SELYLVEGDSAGGSAK GRNR QAILPL+GK+LNVE+ + + + Sbjct: 301 PGKLADCESNDSSISELYLVEGDSAGGSAKTGRNRHFQAILPLRGKVLNVERVQEVRAFA 360 Query: 464 SQEVATLITALGCGIGRDEYNPDKLRYHSIIIMT 497 + E+ +++TA+G GI +++ + K+RY I+IMT Sbjct: 361 NTEIKSIVTAVGTGI-KEDIDLSKIRYGKIVIMT 393 >UniRef50_D2UZM0 DNA topoisomerase II n=1 Tax=Naegleria gruberi RepID=D2UZM0_NAEGR Length = 1457 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 141/603 (23%), Positives = 246/603 (40%), Gaps = 67/603 (11%) Query: 10 IKVLKGLDAVRKRPGMYIGDTDDGTG-----------------------LHHMVFEVVDN 46 + + + RP Y+G + G L+ + E++ N Sbjct: 54 YQKKSLREQILLRPDTYVGSVNMQEGEDMWIWDDEDKRMKMKTIKFVPALYKIFDEILVN 113 Query: 47 AIDEALAGH-CKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKF 104 A D ++ C +I VTI+ + N +SV ++G GIP IH E + +I L F Sbjct: 114 AADHSVRDETCNKIKVTINPEQNEISVYNNGAGIPVKIHAEHKIYVPTMIFGHLLTSSNF 173 Query: 105 DDNSYKVSGGLHGVGVSVVNALSQKL--ELVIQREGKIHRQIYEHGVPQ--APLAVTGET 160 DD +V+GG +G G + N S+K E V E K RQ + + + P T Sbjct: 174 DDTQKRVTGGRNGYGAKLTNIFSEKFIVETVDSEEKKKFRQTWTQNMEKEEEPKITTCSK 233 Query: 161 EKTGTMVRFWPSLETFT--NVTEFEYEILAKRLRELSF-LNSGVSIRLRDKRDGKEDHFH 217 ++ T + F+P L F + + +L KR+ +L+ L +G+ I L K+ F Sbjct: 234 AESYTEITFYPDLSKFGMDKLDDDIVSLLKKRVYDLAGTLKTGIGIYLNGKKITGMKTF- 292 Query: 218 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRD 277 K +V+ +K I YF DG +V + ++G F N+I Sbjct: 293 -----KDYVKLYTIDK-----EIHYFE---DGKRWKVGITLSEG-SMQQVSFVNSICTTK 338 Query: 278 GGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTK 337 GG H+ ++ + + K+ + + L VS + +P F SQ+K Sbjct: 339 GGKHVDHIVNQVSDNIKKALVKKNN------TIKPAYIKNQLWVFVSSLIINPSFDSQSK 392 Query: 338 DKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGA 397 + L +S + +++E + + + ++A ++ A + ++ +K Sbjct: 393 ETLTTSMKDFGSKCKLDEAFLKKVTKMASEA------VLKYADFKSEKALNKKSGTKKSR 446 Query: 398 LDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRN---RKNQAILPLKGKILNVE 454 L D ++ L L EGDSA A G + R + PLKGK LNV Sbjct: 447 LTGISKLDDANDAGSKNSEKCTLILTEGDSAKALAVGGLSVVGRDYYGVFPLKGKPLNVR 506 Query: 455 KARFDKMLSSQEVATLITALGCGIGRDE--YNPDKLRYHSIIIMTDADVDGSHIRTLLLT 512 + DK++ ++E++TL LG + + LRY SI+IM D D DGSHI+ LL+ Sbjct: 507 DCKLDKVVKNEEISTLAKILGLKFDKTYTKEDIKSLRYGSIMIMADQDHDGSHIKGLLIN 566 Query: 513 FFYRQMPEIVE-RGHVYIAQPPLYKVKKG--KQEQYIKDDEAMDQYQISIALDGATLHTN 569 F ++ P +++ G + P+ K K+ + ++ ++ Sbjct: 567 FIHKFWPSLLKIPGFLKEFITPIVKATNNRTKKAVTFFSIPEYETWKEGLSDTKGWTIKY 626 Query: 570 ASA 572 Sbjct: 627 YKG 629 >UniRef50_A0C0L0 DNA topoisomerase 2 n=3 Tax=Paramecium tetraurelia RepID=A0C0L0_PARTE Length = 1274 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 130/600 (21%), Positives = 242/600 (40%), Gaps = 50/600 (8%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDT--------------------DDGTGLHHMV 40 M K + ++ + +RP YIG + G + Sbjct: 1 MRQKTIEEQYKKMTHIEHILQRPDTYIGSIQRTSEQMWIIQNGKMIQKEIEYVPGFFKIF 60 Query: 41 FEVVDNAIDEALA--GHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVL 98 E++ NA D K+ + + N +++++DG IP IH E + E+I V Sbjct: 61 DEILVNAADNLQRDTRQHKQSYIKVDIGNEITIKNDGLPIPVEIHKEYQIYVPELIFGVF 120 Query: 99 HAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTG 158 G FDD+ +V GG +G G + N S + L + + ++ + + + Sbjct: 121 LTGSNFDDSEKRVVGGRNGYGAKLTNVYSTEFTLEVCDGNNYFKLVWNNNMSNKQIPTIK 180 Query: 159 ETEKT-GTMVRFWPSLET--FTNVTEFEYEILAKRLRELSFLN-SGVSIRLRDKRDGKED 214 + +K + + P + + +L +R+ +L+ + S +++ L D++ Sbjct: 181 QLKKDPYVSISYKPDYKRFGMKEIEADTQALLTRRVYDLAGIYGSKINVYLNDEKIK--- 237 Query: 215 HFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIP 274 I +F +Y++ P I F + EV + ++ Q F N I Sbjct: 238 -------INSFQKYVDLY-LPTEGAIKIFDKDMTTPRWEVVVSYSPT-QFQHVSFVNAIY 288 Query: 275 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 334 GGTH+ + + + M+ K + ++ L ++ + +P F S Sbjct: 289 TAKGGTHVNYVTDKIIQEIQNEMNNNKKYK--SIEVQKYQIKQSLWVFINCLIDNPTFDS 346 Query: 335 QTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRR 394 QTK+ + + + + + E + I + I A+A+ A+ +++ Sbjct: 347 QTKENMTTKVSEFGGSSEEKFKVTEKFSKALIKTDI-IETIFQQAKAKADAKLNKQLKGT 405 Query: 395 KGALDLAGLPGKLADCQ---ERDPALSELYLVEGDSAGGSAKQGRN---RKNQAILPLKG 448 K KL D +++ L L L EGDSA A G + R + PLKG Sbjct: 406 KTGRLHG--IEKLDDANDAGKKNSELCTLILTEGDSAKALAMAGIDIVGRDRYGVFPLKG 463 Query: 449 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRT 508 K+LNV +A ++L ++E+ LI +G R + LRY S++IMTD D+DGSHI+ Sbjct: 464 KLLNVREASLKQILQNEEIENLIKIIGLQKERQYTDLKSLRYGSVMIMTDQDIDGSHIKG 523 Query: 509 LLLTFFYRQMPEIVE-RGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLH 567 L++ F + P +V+ G + PL K KG Q + +++ + + Sbjct: 524 LIINFIHHFWPSLVKYSGFLKEFVTPLIKATKGNQTIPFFTVQDFNKFAQEEDIKNWKIK 583 >UniRef50_B7XIW3 DNA topoisomerase 2 n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XIW3_ENTBH Length = 1159 Score = 445 bits (1144), Expect = e-123, Method: Composition-based stats. Identities = 139/610 (22%), Positives = 254/610 (41%), Gaps = 66/610 (10%) Query: 10 IKVLKGLDAVRKRPGMYIGDTDDGT----------------------GLHHMVFEVVDNA 47 + + + RP YIG + T GL+ + E++ NA Sbjct: 9 YQKKTPKEHILLRPDTYIGSVEIDTQSAFVWDNMQEKIVLKNVKFAPGLYKIFDEILVNA 68 Query: 48 IDEALAGH-CKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDD 106 D I V I+ SVS+++DG GIP IH +E V E+I L ++D Sbjct: 69 ADNKQRDPRMTYIKVYINEM-SVSIENDGNGIPIEIHQKEQVYVPELIFGHLLTSSNYND 127 Query: 107 NSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGV-PQAPLAVTGETEKTGT 165 N KV+GG +G G + N S E+ +G+ + Q++++ + ++ + K T Sbjct: 128 NEKKVTGGRNGYGAKLCNIFSVHFEVETVSKGRKYSQVFKNNMEIIGKPTISAYSGKDYT 187 Query: 166 MVRFWPSLETFTNVTEFEYEILA---KRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGI 222 + F P + F ++ F+ +I++ KR+ ++ I L DK+ + + Sbjct: 188 KITFVPDFKRFG-MSLFDSDIISIFYKRVYDMCATVKNTEIYLNDKKLMINN-------L 239 Query: 223 KAFVE-YLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTH 281 K + + YL+ + + I E+A D Q F N+I GGTH Sbjct: 240 KEYAQLYLSHDVKLVTKKI--------NDRWEIACASTDE-QFMQVSFVNSICTSKGGTH 290 Query: 282 LAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLV 341 + + L + + K + + + + L ++ + +P F SQTK+ L Sbjct: 291 VNHVLDQLMDPLISAVKK----RDKTLVLKPLNVKNNLFLFINALIENPIFDSQTKENLT 346 Query: 342 SSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLA 401 + Q + + + +++N ++ KII ++ ++A + + + Sbjct: 347 LKSSAFGSKCQPIDDIIKDIIKNTD----IIDKIITFSKIKQAVLLKKTDGVKTTKIV-- 400 Query: 402 GLPGKLADCQ---ERDPALSELYLVEGDSAGGSAKQGRN---RKNQAILPLKGKILNVEK 455 G+P KL D + + L L EGDSA A G + R + PL+GK+LNV + Sbjct: 401 GIP-KLEDANFAGTKRSSECTLILTEGDSAKTLAVAGLSVVGRDKYGVFPLRGKLLNVRE 459 Query: 456 ARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFY 515 A +++ + E++ + LG G+ + LRY I+IMTD D DGSHI+ L++ F Sbjct: 460 ASNKQIMDNAEISAIKKILGLQHGKTYTDTTSLRYGHIMIMTDQDFDGSHIKGLIINFLD 519 Query: 516 RQMPEIVER-GHVYIAQPPLYKVKKGKQEQYIKDDEAMDQY--QISIALDGATLHTNASA 572 P +++ G + P+ + K K++ +++ QI D + Sbjct: 520 YFFPSLLKILGFLQEFITPIVRATKKKEKYDFFTIPEYEKFKQQIEQIKDSGWVIKYYKG 579 Query: 573 PALAGEALEK 582 + K Sbjct: 580 LGTSTTDDAK 589 >UniRef50_D2QHC5 DNA topoisomerase type IIA subunit B region 2 domain protein n=6 Tax=Bacteroidetes RepID=D2QHC5_9SPHI Length = 632 Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 186/630 (29%), Positives = 292/630 (46%), Gaps = 66/630 (10%) Query: 4 SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGT----GLHHMVFEVVDNAIDEALAGHCKEI 59 Y+ SI+ L + +R RPGMYIG DG+ G++ ++ E +DN IDE + G K I Sbjct: 10 QYNEDSIRSLDWREHIRLRPGMYIGKLGDGSAADDGIYVLIKETIDNCIDEHVMGFGKVI 69 Query: 60 IVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 119 V + D+ V V+D GRGIP G EV+ + ++ GGK+D +++ S GL+GVG Sbjct: 70 EVRV-TDHRVEVRDFGRGIPLGK-------VVEVV-SKINTGGKYDSGAFQKSVGLNGVG 120 Query: 120 VSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGE---TEKTGTMVRFWPSLETF 176 VNALS + REGK ++ G L GE TE+ GT++ F P F Sbjct: 121 TKAVNALSSYFRVQSFREGKTVWAEFDRG----ELKQRGEDATTERNGTLICFEPDDTVF 176 Query: 177 TNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPI 236 + F + L + +LN+G++I ++ + G + + K++ + Sbjct: 177 KHF-HFIPQFLENMIWNYCYLNAGLTISFNKQK-----YLSQNGLLDLLRDKTKKDEDSL 230 Query: 237 HPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAY 296 I + G +E+AL + + E Y F N GGTHL + A+ T+ + Sbjct: 231 RYPIIHLK----GNDLEIALTHGNQYGEEYYSFVNGQYTTQGGTHLNALKEAVVETVRRH 286 Query: 297 MDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSS---------EVKS 347 DK D R +IA VS++V +P F SQTK KL S V S Sbjct: 287 FDKN---------YEVSDIRSSIIAAVSIRVQEPVFESQTKTKLGSQNMSPEPNAQSVSS 337 Query: 348 AVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKL 407 V+ + E L ++L NP + + +I + R R+ +++ + KL Sbjct: 338 FVKDFVKERLDDFLHMNPAVREALKKRIEQSERERKELAGIKKLANDRAKKASLH-NKKL 396 Query: 408 ADCQERDPA-------LSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 460 DC+ P S L++ EGDSA GS + RN ++QA+ L+GK LN Sbjct: 397 RDCRNHLPDLKADDRYQSTLFITEGDSASGSITKSRNVQSQAVFSLRGKPLNCFGLTKKV 456 Query: 461 MLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPE 520 + ++E L AL G + LRY+ I+I TDADVDG HIR L+LTFF + P+ Sbjct: 457 VYENEEFNLLQHALDIEDG-----LEGLRYNRIVIATDADVDGMHIRLLMLTFFLQFFPD 511 Query: 521 IVERGHVYIAQPPLYKV---KKGKQEQYIKDDEAMDQYQ--ISIALDGATLHTNASAPAL 575 +V GH+YI + PL++V K K+ Y ++ + ++ A + + Sbjct: 512 LVRNGHLYILETPLFRVRNPKNHKETTYCYSEDEKQKAIDKLTKAAKKVEITRFKGLGEI 571 Query: 576 AGEALEKLVSEYNATQKMINRMERRYPKAM 605 + + + E + +I E PK + Sbjct: 572 SPDEFGLFIGENMRLEPVIMEKETSVPKLL 601 Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 46/98 (46%), Gaps = 4/98 (4%) Query: 708 ERGERRQPVASFEQALDWLVKESR--RGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRV 765 + + S ++ + K ++ + + I R+KGLGE++P++ E+ R+ V Sbjct: 532 KNHKETTYCYSEDEKQKAIDKLTKAAKKVEITRFKGLGEISPDEF--GLFIGENMRLEPV 589 Query: 766 TVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANID 803 ++ + +L + MG R+ FI +N ++D Sbjct: 590 IMEKETSVPKLLSYYMGKNTPDRQRFIIDNLRIEKDVD 627 >UniRef50_A1EGM8 DNA gyrase subunit B (Fragment) n=1 Tax=uncultured bacterium RepID=A1EGM8_9BACT Length = 428 Score = 441 bits (1135), Expect = e-122, Method: Composition-based stats. Identities = 208/436 (47%), Positives = 272/436 (62%), Gaps = 25/436 (5%) Query: 92 EVIMTVLHAGGKFDDN----SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEH 147 EVIMTVLHA GKFD+ +YK SGGLHGVG SVVNALS +L + I+R+G Q + Sbjct: 1 EVIMTVLHAAGKFDNETGESAYKTSGGLHGVGASVVNALSTRLTMEIKRDGFTWHQEFRG 60 Query: 148 G-VPQAPLAVTGETEKTGTMVRFWPSLETF-----TNVTEFEYEILAKRLRELSFLNSGV 201 G P A LA+ + + GT +RFWP F + F+ E +A+ L + LN G+ Sbjct: 61 GGEPVAELAMGKPSREHGTTIRFWPDPTIFVPEEGQDPLSFDKERVARSLSTRAHLNPGL 120 Query: 202 SIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIF-------YFSTEKDGIGVEV 254 +I + D+RDG E + E +F E L+ T +F T+K + V V Sbjct: 121 AITMIDERDGSEQTWKAE----SFAEILDDLATVSSAPVFGPLSETAAVDTDKGRVEVMV 176 Query: 255 ALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDD 314 AL+ + I + NNI GGTH AG R+A+ + +NAY G K+ T +D Sbjct: 177 ALRVHAERASTIASYANNIVTPQGGTHEAGMRSALLKAINAYGKTNGLLKEP---LTAED 233 Query: 315 AREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGK 374 +EGL+A V+V+V +P F+ QTKDKL ++E AV Q + LL+++ ENP DAK ++ + Sbjct: 234 VQEGLVAAVAVRVTEPLFAGQTKDKLANTECTGAVMQVVYRLLSKHFEENPKDAKNLINR 293 Query: 375 IIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQ 434 AA+AR AA +ARE+ RK L GLPGKLADCQE DP+L ELY+VEGDSAGGSAKQ Sbjct: 294 AALAAKARAAAEKARELVERKNPLSGGGLPGKLADCQESDPSLCELYIVEGDSAGGSAKQ 353 Query: 435 GRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSII 494 GR+RK QAILPLKGK LNV K K L SQE++ + T LGCG+ + ++ KLRYH +I Sbjct: 354 GRDRKFQAILPLKGKPLNVMKYDMGKALKSQEISNITTVLGCGV-LNTFDISKLRYHRVI 412 Query: 495 IMTDADVDGSHIRTLL 510 IMTDADVDGSHIRTLL Sbjct: 413 IMTDADVDGSHIRTLL 428 >UniRef50_A8Q6X4 DNA topoisomerase 2 n=1 Tax=Brugia malayi RepID=A8Q6X4_BRUMA Length = 1178 Score = 441 bits (1134), Expect = e-122, Method: Composition-based stats. Identities = 143/704 (20%), Positives = 261/704 (37%), Gaps = 72/704 (10%) Query: 8 SSIKVLKGLDAVRKRPGMYIGDT-----------------------DDGTGLHHMVFEVV 44 + L L + RP YIG T GL + E++ Sbjct: 63 EKYQRLTPLKHILYRPDSYIGPTFLSDEQPIYVYDDITKQILKKEARIVPGLLKIFDEIL 122 Query: 45 DNAIDEALAGH-CKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGG 102 NA D I + I + N++S+ ++GRGIP IHP EG+ +I L Sbjct: 123 VNAADNKRRDPQMTTIAINIDKERNTISIWNNGRGIPVEIHPREGIYVPTMIFGTLFTSS 182 Query: 103 KFDDNSYKVSGGLHGVGVSVVNALSQKLELVI--QREGKIHRQIYEHGVPQAPLAVTGET 160 +DD+ K+ GG +G G + N S + + ++ G Q + + + + + Sbjct: 183 NYDDSELKIVGGRNGFGAKLCNIFSTEFSVETCTKQSGLRFFQCWRNNMNDVDDPIISDA 242 Query: 161 E---KTGTMVRFWPSLETFT--NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDH 215 T V F P L F + E +++ +R+ +++ GV++ L + Sbjct: 243 STNASDYTCVTFKPDLSKFKLSTLDEDTIQVMIRRIVDIAGTLDGVNVFLNGTKIEV--- 299 Query: 216 FHYEGGIKAFVEYLNK--NKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNI 273 G K +V+ + ++ + + + + D + VA + G+ F NNI Sbjct: 300 ----SGFKDYVKLFSTYTGESVENSTVPSYCSVNDRWQIAVARS-DTGYNH--ISFVNNI 352 Query: 274 PQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFS 333 GG H+ + L +++ K + + L V+ + +P F Sbjct: 353 NTLKGGRHVDYIVNQIVSRLKHEINQRYGCDKF---ISAHQIKNRLHIFVNSLIENPAFE 409 Query: 334 SQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTR 393 SQ+K+ L +S + E E +++ ++ I R + Sbjct: 410 SQSKEYLTTSVKNFGSTCIVPESFYENFIKDSDIIHHLLCDISQQHTTSLNRSMNRSL-- 467 Query: 394 RKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGR---NRKNQAILPLKGKI 450 DL+ L AD ++ L + EGDSA A G RK + P++GK+ Sbjct: 468 ----WDLSKLEDA-ADAGTKNGCNCTLIITEGDSAKALAVAGLAVIGRKQYGVFPIRGKL 522 Query: 451 LNVEKARFDKMLSSQEVATLITALGCGIGRDE---YNPDKLRYHSIIIMTDADVDGSHIR 507 NV + + E++ L+ LG G + LRY ++IMTD D DGSHI+ Sbjct: 523 TNVRGMDAKMAVENAEISALVRILGLKFGENYSSHEKLKSLRYGRLLIMTDQDPDGSHIK 582 Query: 508 TLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLH 567 L++ F + P +++ +V PL K K+G + ++++ + Sbjct: 583 GLIVNFLHVYWPSLLKANYVSYFITPLLKAKRGSDIKSFYSTADYEKWRAENPDS---VK 639 Query: 568 TNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVT 627 + G + K EY N +ER + I ++ A ++ Sbjct: 640 YSIKYYKGLGTSSAKEAREY------FNDIERHTVNFIYDGKISDESIELAFAKNKADDR 693 Query: 628 R-WVNALVSELNDKEQHGSQW--KFDVHTNAEQNLFEPIVRVRT 668 + W+ L ++ F N E + + R+ Sbjct: 694 KVWIAESSKLLLSTAVDSNRNQKTFSEFVNEELVEYSQLDLRRS 737 >UniRef50_A4HGT2 DNA topoisomerase 2 n=11 Tax=Trypanosomatidae RepID=A4HGT2_LEIBR Length = 1501 Score = 440 bits (1133), Expect = e-122, Method: Composition-based stats. Identities = 134/591 (22%), Positives = 240/591 (40%), Gaps = 66/591 (11%) Query: 10 IKVLKGLDAVRKRPGMYIGDTDDGT----------------------GLHHMVFEVVDNA 47 + + + RP MYIG + T GL+ + E++ NA Sbjct: 9 YQKKTQHEHILTRPDMYIGTIEPVTDDIWVYDDAENIMKQRKCTWTPGLYKIFDEILVNA 68 Query: 48 IDEALAGHCKEIIVTI-HADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDD 106 D + + ++ + ++ V V ++G GIP H E + E+I L +DD Sbjct: 69 ADNKVRDPLGQTVIRVWMTEDYVRVYNNGEGIPIQRHREHDLWVPEMIFGHLLTSSNYDD 128 Query: 107 NSYKVSGGLHGVGVSVVNALSQKLELVI--QREGKIHRQIYEHGVPQAPLAVTGETEK-T 163 KV+GG +G G + N S++ E+ R K + + + Q + E Sbjct: 129 EEAKVTGGRNGFGAKLTNVFSKQFEVETVHSRSRKKFYMKWTNNMLQHDDPIIVPCESAD 188 Query: 164 GTMVRFWPSLETFTNVTEFEYEIL---AKRLRELSFLN-SGVSIRLRDKRDGKEDHFHYE 219 TMV F+P F +V +F +IL +R+ +++ + L D+R Sbjct: 189 YTMVTFYPDFARF-HVDKFSEDILLMMKRRVYDVAGCTDKTLKCFLNDERIA-------- 239 Query: 220 GGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGG 279 F EY++ T + S + E+ ++ ++ F N+I GG Sbjct: 240 --CTTFPEYVDLYPT-MGEERKAASYSRANDRWELCVRVSN-IGPQQVSFVNSIATTRGG 295 Query: 280 THLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDK 339 TH+ + + K+ K R + V+ + +P F SQTK+ Sbjct: 296 THVKYIMDQIVTKVVEQAKKK-----KKTDVKSHMIRPHIFLFVNCLIDNPSFDSQTKET 350 Query: 340 LVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALD 399 L + + K + + +Y++ + +V + ++ A ++ A A ++ + Sbjct: 351 LNTVKSKFGSTCDLPNSIVDYIMNSG-----IVERSVEMANSKIAKEMASKI-KSSDRKQ 404 Query: 400 LAGLPGKLADCQE---RDPALSELYLVEGDSAGGSAKQGR---NRKNQAILPLKGKILNV 453 + G+P KL D E + L L EGDSA G +R + PL+GK LNV Sbjct: 405 IMGIP-KLDDANEAGGKHGHRCTLILTEGDSAKTLCTAGLAVKDRDYFGVFPLRGKPLNV 463 Query: 454 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTF 513 +A K+ + +E+ ++ +G I + N D LRY ++IM+D D DGSHI+ LL+ F Sbjct: 464 REASLKKLAACEEIQCVMKIMGLDIRQKYENTDGLRYGHLMIMSDQDHDGSHIKGLLINF 523 Query: 514 FYRQMPEIVE-RGHVYIAQPPLYKVK---KGKQEQYIKDDEAMDQYQISIA 560 + P ++ G + P+ K + +G + +M Y Sbjct: 524 IHCFWPNLLRVPGFLQQFITPIVKARPKGRGGAGK-AISFFSMPDYFEWKK 573 >UniRef50_B2RL68 DNA topoisomerase IV B subunit n=60 Tax=Bacteria RepID=B2RL68_PORG3 Length = 644 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 181/632 (28%), Positives = 291/632 (46%), Gaps = 80/632 (12%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGT----GLHHMVFEVVDNAIDEALAGHC 56 + Y S IK L+ + +R+RPGMYIG DG+ G++ ++ EV+DN++DE + G Sbjct: 7 LQTEYIESDIKTLEWDEHIRRRPGMYIGKLGDGSHADDGIYVLLKEVLDNSVDEFVMGAG 66 Query: 57 KEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 116 K I +TI + +V+V+D GRGIP G ++ GGK D ++K S GL+ Sbjct: 67 KSIDITIE-NGTVTVRDYGRGIPLGK--------LVDATCKMNTGGKIDSKAFKKSVGLN 117 Query: 117 GVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETF 176 GVG+ VNALS + + + R+G+ R Y E +GT VRF P F Sbjct: 118 GVGIKAVNALSTEFVVTVWRDGQTKRVRYSRAELLEETDPVPSGEPSGTEVRFTPDDSLF 177 Query: 177 TNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPI 236 N ++ E + ++ +FLN+G+S K+ F G++ + N + Sbjct: 178 RNY-RYQEEFVVSMIKNYTFLNTGLSFFYNGKK------FLSRKGLEDLLAE-NMTGDAL 229 Query: 237 HPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAY 296 +P I T+ +E+ + + + Y F N GGTHL+ FR A+ RT+ + Sbjct: 230 YPIIHLSDTD-----IEIVVTHTQQYGDEFYSFVNGQNTTQGGTHLSAFREAVARTIKEF 284 Query: 297 MDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSE-------VKSAV 349 K D R G+ A +S+KV +P F SQTK KL S + ++ V Sbjct: 285 YSKN---------FEYSDIRSGMAAAISIKVEEPVFESQTKTKLGSRDMGPDGPTIQKFV 335 Query: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAA----RRAREMTRRKG--ALDLAGL 403 + + L +YL + A+ ++ KI + R R+A + ARE ++ L Sbjct: 336 GDFLKKELDDYLHIHTETAEEMLRKIQQSERERKAMSGITKLARERAKKSNLHNKKLRDC 395 Query: 404 PGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLS 463 L D + ++P + +++ EG+SA GS R+ QA+ L+GK LN + Sbjct: 396 TVHLNDPKAKEPERTSIFITEGNSASGSITTCRDANYQAVFSLRGKPLNCFGLTKKVVYE 455 Query: 464 SQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVE 523 ++E L AL E D LRY+ +II TDAD DG HIR L++TFF + P++V Sbjct: 456 NEEFNLLQAALNI-----EEGLDGLRYNRVIIATDADDDGMHIRLLIITFFLQFFPDLVR 510 Query: 524 RGHVYIAQPPLYKV---------------KKGKQEQ-----------YIKDDEAMDQYQI 557 +GHVY+ + PL++V K+G+++Q Y + Sbjct: 511 KGHVYVLETPLFRVFLPPESKKQTFGATPKRGRKKQESDMPKPVTDIYCYSEAEKQAALK 570 Query: 558 SIALDGATLHTNASAPALAGEALEKLVSEYNA 589 + ++ E + L+ E N Sbjct: 571 QLGKKADVTRFKGLG-EISPEQFKDLIDEENI 601 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 3/136 (2%) Query: 660 FEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASF 719 F P + + H + PL F+ E ++ RG ++++ + + S Sbjct: 504 FFPDLVRKGHVYVLETPLFRVFLP-PESKKQTFGATPKRGRKKQESDMPKPVTDIYCYSE 562 Query: 720 EQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTT 779 + L + ++ + R+KGLGE++PEQ + +D E+ R+ V++K +L T Sbjct: 563 AEKQAALKQLGKK-ADVTRFKGLGEISPEQFKD-LIDEENIRLEPVSLKREDKIKELLTF 620 Query: 780 LMGDAVEPRRAFIEEN 795 MG R+ FI +N Sbjct: 621 YMGKNTSERQEFIIDN 636 >UniRef50_A5K8Q8 DNA gyrase subunit b, putative n=1 Tax=Plasmodium vivax RepID=A5K8Q8_PLAVI Length = 936 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 214/788 (27%), Positives = 326/788 (41%), Gaps = 157/788 (19%) Query: 96 TVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLA 155 T A K Y+ S GLHGVG+SV NALS +++ + R GKIH E G PL+ Sbjct: 215 TPKEAPQKSPSQMYRFSSGLHGVGLSVANALSSFMKVKVFRRGKIHSIELEKGKVVTPLS 274 Query: 156 VT-GETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDG--- 211 V K GT + + P F N E++ R+ +L++LN +S D+R Sbjct: 275 VRDCPVSKRGTQIHYRPDPTIFKNTIRHNAEMIRNRIHQLAYLNDRLSFYFYDERAAKKA 334 Query: 212 --------------------------------KEDHFHYEGGIKAFVEYLNKNKTPIHPN 239 + +EGG+ ++E L KNK + + Sbjct: 335 AAEAENAANAADLADVADHAGNTAEHNNLDFYPYEVIKHEGGLDEYMESLTKNKASLFKD 394 Query: 240 ---IFYFSTEKDGIGVEVALQWNDG-FQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNA 295 + + + +++ L+W G + E+I F NN+ DGGTH+ + A++R +N Sbjct: 395 SNKVISITCHHKNVHIDLRLKWTQGEYHEHIISFVNNVNTTDGGTHVDAMKYAISRCVN- 453 Query: 296 YMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNE 355 + K+ + + V+ G+ REG+ A++S+K+ +P+F QTK KL S +K +E + E Sbjct: 454 FNIKKNEATRNFVNIPGEYIREGMTAILSIKMNNPEFEGQTKTKLGSHFLKPILESAIFE 513 Query: 356 LLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAG-LPGKLADCQERD 414 L+E P + K + A + E A+ AR++ R K A LPGKL DC D Sbjct: 514 KLSEIFDFEPNLLNTIYLKALQAKASDEEAKAARDLIRSKNNQCYATILPGKLVDCISDD 573 Query: 415 PALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK-ARFDKMLSSQEVATLITA 473 +E+++VEGDSA GSAKQ RNR+ QAILPLKGKILNVEK ++ + E+ +LITA Sbjct: 574 INRNEIFIVEGDSAAGSAKQARNREIQAILPLKGKILNVEKIKNNKRIFENSELKSLITA 633 Query: 474 LGCGIGRDEYNPDK--------------------------------------------LR 489 +G + + K LR Sbjct: 634 IGLSVSCENSKIAKGKSTINSKKKDLKKKYDLRSGKKENAQVNNALVSKKKNPLFDTPLR 693 Query: 490 YHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDD 549 Y IIIMTDADVDG HIR LLLTF YR I++ G+V++A PPLYKV + + Sbjct: 694 YGKIIIMTDADVDGEHIRILLLTFLYRFQKNIIQNGNVFVACPPLYKVTYNRFFDATIKE 753 Query: 550 EAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQ-KMINRMERRYPKAMLKE 608 M Q+ +S +HT + + L L+ + + + + Sbjct: 754 TVMKQFNVSTKNSKTLIHTYSD------DELNVLLGLLDKDRSSHAEHRSAQLGRGK--- 804 Query: 609 LIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRT 668 PT SD++ A +++LN G +V E + + V Sbjct: 805 ----PTRGGNLPSDDRGSGL---AGLADLN----FGYNGADEVTKEGELSTDDSSVANTE 853 Query: 669 HGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVK 728 + F E +R LGE + L R + V + Sbjct: 854 NADPAANSAFFTFSKRYEIQRFKGLGEMMADQLWSTTMDPRVRKLIRVTVSDA------- 906 Query: 729 ESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPR 788 M L +F+ LMG+ + R Sbjct: 907 ----------------MRANNL-------------------------IFS-LMGEDSKLR 924 Query: 789 RAFIEENA 796 ++FI EN+ Sbjct: 925 KSFILENS 932 Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats. Identities = 59/122 (48%), Positives = 84/122 (68%), Gaps = 3/122 (2%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 N YD+ I +L+GL+AVRKRPGMYIG+TD GLH ++FE++DN++DE C EI + Sbjct: 50 CNDYDAKDIVILEGLEAVRKRPGMYIGNTD-VKGLHQILFEIIDNSVDEYNNFECNEIKI 108 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNS--YKVSGGLHGVG 119 IH D SV+++D+GRGIP +H + SA E ++TVLH+G KF D+ ++ GG G Sbjct: 109 VIHQDESVTIEDNGRGIPCDVHEKTKKSALETVLTVLHSGAKFVDDEADAQLEGGSSVGG 168 Query: 120 VS 121 +S Sbjct: 169 LS 170 >UniRef50_UPI00016B23A5 DNA gyrase subunit B n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B23A5 Length = 486 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 199/470 (42%), Positives = 284/470 (60%), Gaps = 15/470 (3%) Query: 173 LETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKN 232 F F+Y+ + LR ++L GV + D+R G+ F++EGGIK++V+ LN Sbjct: 1 PTIFKETVNFDYKWVVNYLRHQAYLTKGVYTSVVDERTGERKAFYFEGGIKSYVKNLNIG 60 Query: 233 KTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRT 292 K + +IFY + + VE+A+Q+ND + E + F NN+ DGGTHL GFR A+TR Sbjct: 61 KEVLSEDIFYVEKQIEDCMVEIAVQYNDTYVEVVKPFANNVLTPDGGTHLVGFRTALTRV 120 Query: 293 LNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQ 352 +N Y K K+ + + TGDD REGL AV+ VK+PDP+F QTK+KL + E++ V+Q Sbjct: 121 INDYARKNNLLKEKEDNLTGDDIREGLTAVILVKLPDPQFEGQTKNKLGNPEMRRYVDQV 180 Query: 353 MNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQE 412 M+E A YL ENP AK VVGK AARAR+AAR AR+ RKGA + LP KL DC Sbjct: 181 MSEYFAYYLEENPATAKKVVGKATLAARARKAARAARDNVIRKGAFEGLNLPSKLTDCSS 240 Query: 413 RDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 472 R+ EL++VEG+SA GSAK GR+ QAILPL+GK+LN E+ARFDKM ++ E+ +LI Sbjct: 241 RNRKDCELFIVEGNSAAGSAKDGRDSTIQAILPLRGKVLNTERARFDKMFANAEIVSLIK 300 Query: 473 ALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQP 532 A+G GIG D+++ +RY II MTDADVDG+HI TLL+TFF+R M E++E GHVY+A+P Sbjct: 301 AMGVGIG-DQFDISGIRYDKIIFMTDADVDGAHISTLLMTFFFRYMSEVIEAGHVYLAKP 359 Query: 533 PLYKVKKG----KQEQYIKDDEAMDQYQISIALD----GATLHTNASAPALAGEALE--- 581 PL+ + KG ++ YI D+ A+++ + G + NA AG + Sbjct: 360 PLFGLSKGTGSNRKIDYIYDEAALEEKLTEKINERKAAGVKIDENAERFKQAGYTAQQRF 419 Query: 582 KLVSEYNATQKMINRM---ERRYPKAMLKELIYQPTLTEADLSDEQTVTR 628 K + E +A+Q M R K +++ + + D + + Sbjct: 420 KGLGEMDASQLWETTMNPENRTLVKVNIEDAERADAIFTKLMGDSVELRK 469 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 37/70 (52%), Positives = 53/70 (75%), Gaps = 2/70 (2%) Query: 737 QRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENA 796 QR+KGLGEM+ QLWETTM+PE+R +++V ++DA AD +FT LMGD+VE R+ FI+ NA Sbjct: 417 QRFKGLGEMDASQLWETTMNPENRTLVKVNIEDAERADAIFTKLMGDSVELRKNFIQTNA 476 Query: 797 --LKAANIDI 804 + ++D Sbjct: 477 AKVNVEDLDF 486 >UniRef50_Q7RHG3 DNA topoisomerase II, putative n=3 Tax=Plasmodium (Vinckeia) RepID=Q7RHG3_PLAYO Length = 930 Score = 437 bits (1125), Expect = e-121, Method: Composition-based stats. Identities = 190/558 (34%), Positives = 283/558 (50%), Gaps = 54/558 (9%) Query: 101 GGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVT-GE 159 + YK S GLHGVG+SV NALS +++ + R+ KI+ E G L V Sbjct: 264 KTNENLQKYKYSSGLHGVGLSVSNALSTFMKVNVFRDNKIYNIELEKGKVVKELNVQDCP 323 Query: 160 TEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE------ 213 +K GT + + P F + E + RL +L++LN ++ D+R+ + Sbjct: 324 IKKRGTQIHYKPDNTIFKTNIKHNSEFIKNRLHQLAYLNDKLTFYFYDERNSNKGNSDKV 383 Query: 214 -----------------DHFHYEGGIKAFVEYLNKNKTPIHP---NIFYFSTEKDGIGVE 253 + +EGG+ ++E L KNKT I + S + I V+ Sbjct: 384 SENVENNSYTKLDNYEYEIIKHEGGLDEYMEKLTKNKTNIFKTNNKVISISCFQKNIHVD 443 Query: 254 VALQW-NDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATG 312 + L+W + + ENI F NN+ DGGTH+ + A++R++N Y K+ + K V+ G Sbjct: 444 LKLKWVTNQYNENILSFVNNVNTIDGGTHVDAMKYAISRSIN-YNVKKNETIKNFVNIPG 502 Query: 313 DDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVV 372 + REGL A++S+K+ +P+F QTK KL S +K +E + E L+E P + Sbjct: 503 EYIREGLTAILSIKMNNPEFEGQTKTKLGSYYLKPILESIIFEKLSEIFDFEPNLLNTIY 562 Query: 373 GKIIDAARAREAARRAREMTRRKGALDLAG-LPGKLADCQERDPALSELYLVEGDSAGGS 431 K + A ++ E A+ AR++ R K + LPGKL DC D + +E+++VEGDSA GS Sbjct: 563 LKALQAKKSDEEAKAARDLIRSKNNQYYSTILPGKLVDCISDDISKNEIFIVEGDSAAGS 622 Query: 432 AKQGRNRKNQAILPLKGKILNVEK-ARFDKMLSSQEVATLITALGC-------------- 476 AKQ RNR+ QAILPLKGKILNVEK K+ + E+ +LITA+G Sbjct: 623 AKQARNREIQAILPLKGKILNVEKIKNNKKIFENIELKSLITAIGLNVNYDNSKTGKSNT 682 Query: 477 -------GIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 I ++ + LRY IIIMTDADVDG HI LLLTF YR EI+E G+VY+ Sbjct: 683 NKRNDNKDIKKNNFIDTSLRYGKIIIMTDADVDGEHICILLLTFLYRFQKEIIENGNVYV 742 Query: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNA 589 A PPLYKV K D + ++ ++ +HT + + E L L + Sbjct: 743 ACPPLYKVTYNKFFDNNIKDSVISKFNVTTKASKYIIHTYSDSE--LNELLALLDMDKAQ 800 Query: 590 TQKMINRMERRYPKAMLK 607 + N +++R + L Sbjct: 801 ILENKNILKKRKKENFLN 818 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 57/106 (53%), Positives = 78/106 (73%), Gaps = 1/106 (0%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 N+YD+ I +L+GL+AVRKRPGMYIG+TD GLH ++FE+VDNA+DE C +I V Sbjct: 110 CNNYDAKDIVILEGLEAVRKRPGMYIGNTD-SKGLHQILFEIVDNAVDEYNNHECNQIKV 168 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDN 107 IH D S++++D+GRGIP IH + SA E ++TVLH+G KF D+ Sbjct: 169 IIHNDESITIEDNGRGIPCDIHEKTKKSALETVLTVLHSGAKFLDD 214 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 35/73 (47%), Positives = 52/73 (71%) Query: 724 DWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGD 783 + ++ S + IQR+KGLGEM +QLW TTMDP+ R+++RVTV DAI A+ L +LMG+ Sbjct: 855 NDVIFSSSKKYEIQRFKGLGEMMADQLWSTTMDPQVRKLIRVTVSDAIKANNLINSLMGE 914 Query: 784 AVEPRRAFIEENA 796 + R+ FI +N+ Sbjct: 915 DSKSRKDFIIKNS 927 >UniRef50_D2V5K5 DNA topoisomerase II n=1 Tax=Naegleria gruberi RepID=D2V5K5_NAEGR Length = 1135 Score = 435 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 149/707 (21%), Positives = 275/707 (38%), Gaps = 73/707 (10%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDT---------------------DDGTGLHHMVFEVVD 45 + ++ V +RP Y+G T D L+ ++ E++ Sbjct: 11 EQQYQKKTPIEHVLERPDTYVGSTERMKKKLFCLDSVNNIKLKEVDFIPALYRIIDEILV 70 Query: 46 NAIDEA--LAGHCKEIIVTIH-ADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGG 102 NA+D H E+ VTI A N + ++++G+ +P +H E + E++ L G Sbjct: 71 NAVDNHHRKGTHTNELRVTIDEAKNWIHIRNNGKSVPVEMHKIEKIYVPELVFGNLLTGS 130 Query: 103 KFDDNSYKVSGGLHGVGVSVVNALSQKLELVI-QREGKIHRQIYEHGVPQAPLAVTGETE 161 FDDN K +GG +G G + N S + I +G + Q ++ + Q E + Sbjct: 131 NFDDNEVKFTGGRNGYGAKLANIFSTDFTIEIMDHKGTHYIQNWKKNMSQISTPTIVENK 190 Query: 162 ---KTGTMVRFWPSLETFTNV----TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKED 214 + V F P + F + ++L +R+ +LS N +++ L DK+ ++ Sbjct: 191 QKTEPYIQVSFHPDFKKFQSTGLNKELNMIDLLKRRIYDLSACNPKLNVYLNDKKVEVDN 250 Query: 215 HFHYEGGIKAFVE-YLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNI 273 K +V+ + N + HP F + G E+A+ + G + N F N+I Sbjct: 251 F-------KEYVKLFYQNNSSGEHPEK-MFVHKHICDGWEIAIGASVGEEFNQISFVNSI 302 Query: 274 PQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFS 333 GG+H+ ++ ++ Y+ K +++ + R + ++ + +P F Sbjct: 303 ATVQGGSHVNFVLNQLSTKISEYIAK--TYTDLQLTISPYMVRNHITLFINSLIENPTFD 360 Query: 334 SQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTR 393 SQTK+ L + + A + ++ L + + IID A +++ ++ Sbjct: 361 SQTKETLTTKSISFAQKVVISNDLINSIANH--------TPIIDNIIAFANYKQSSASSK 412 Query: 394 RKGALDLAGLPGKLADCQ---ERDPALSELYLVEGDSAGGSAKQGRN---RKNQAILPLK 447 + + L KL D L L EGDSA A G + R + PLK Sbjct: 413 KFKKRESKLLIPKLDDANLAGTNRSMECVLILTEGDSAKALAISGLSVVGRDRFGVFPLK 472 Query: 448 GKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYN----PDKLRYHSIIIMTDADVDG 503 GK+LNV +A D++ +QE+ L LG + +LRY +++M D D DG Sbjct: 473 GKLLNVREASADQIRDNQEIQNLKKILGLDDVSKTDSFEELTKRLRYGKVMLMCDQDHDG 532 Query: 504 SHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563 SHI+ LLL + PE++ V P+ KV KG + + Sbjct: 533 SHIKGLLLNMIHFFYPELLRNNFVDEFITPIIKVSKGSDVKSFFSIPEFQNW-------- 584 Query: 564 ATLHTNASAPALAGEALEKLV--SEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLS 621 + + K + + + + ++R + +P + A Sbjct: 585 -WTKVPENEKNRWNQKYYKGLGTNSSKEAKDYFSNLKRHVIALQYDD-DSEPNIELAFSK 642 Query: 622 DEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRT 668 D + A + + + + N E LF +R+ Sbjct: 643 DLANARKSWVASLKDGTFLDTTNGKVTITDFINNELILFSNQNNIRS 689 >UniRef50_Q59189 DNA topoisomerase 4 subunit B n=27 Tax=Bacteria RepID=PARE_BORBU Length = 599 Score = 434 bits (1116), Expect = e-120, Method: Composition-based stats. Identities = 176/569 (30%), Positives = 289/569 (50%), Gaps = 47/569 (8%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGT----GLHHMVFEVVDNAIDEALAGHCK 57 + +YD S I L L+ +R R GMYIG DG+ G++ ++ E++DN+IDE + G+ Sbjct: 3 TQNYDESKIITLSSLEHIRLRSGMYIGRLGDGSNIDDGIYVLIKEIIDNSIDEFIMGYGN 62 Query: 58 EIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHG 117 EI + +N +S++D GRGIP G E ++V++ G K++D+ ++ S GL+G Sbjct: 63 EIFIK-KENNLISIRDYGRGIPLGKVIES--------VSVINTGAKYNDDVFQFSVGLNG 113 Query: 118 VGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFT 177 VG VNALS K + R GK ++ G ++K GT V F E F Sbjct: 114 VGTKAVNALSSKFLVRSTRNGKSFEALFSKGKLLES-REIKSSDKDGTYVEFLADSEIFG 172 Query: 178 NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIH 237 + + + L +R + LN G+ I D+ F + G+ F+ K+ ++ Sbjct: 173 KYS-YSEDFLKRRFFHYACLNKGLIINYNDQ------IFESKNGLLDFLNSEIKSDDLLY 225 Query: 238 PNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYM 297 ++Y S +E A + + E + F N DGGTH GFR R +N ++ Sbjct: 226 DIVYYSSK-----TLEFAFSHTNNYGETYFSFVNGQYTNDGGTHQTGFREGFVRAINDFL 280 Query: 298 DKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELL 357 K + + D REGL+A +SVK+ DP F SQTK+KL + E + V +++ +++ Sbjct: 281 KK---------TYSSTDIREGLVATLSVKIKDPIFESQTKNKLGNIETRGNVAKEVQKII 331 Query: 358 AEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADC------Q 411 +E L ++ AK++ K++D R R+ R+ R + +P KL DC Sbjct: 332 SEILYKDKILAKLIEKKVVDNERLRKELSSVRKEARERAKKISFKIP-KLKDCKFHFNDS 390 Query: 412 ERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLI 471 + + ++L EGDSA GS R+ QAI L+GK N+ + ++ ++E+ ++ Sbjct: 391 SKQSEQTMIFLTEGDSATGSMVSCRDVYTQAIFSLRGKPQNMFEKNKSEIYKNEELYNMM 450 Query: 472 TALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQ 531 ALG E + + LRY+ ++I TDAD DG HIR LLLTFF +++ GH+YI + Sbjct: 451 VALGI-----EESIENLRYNKVVIATDADFDGFHIRNLLLTFFLTFFEDLILNGHMYILE 505 Query: 532 PPLYKVKKGKQEQYIKDDEAMDQYQISIA 560 PL++V+ K Y +E + + + Sbjct: 506 TPLFRVRNKKITTYCYSEEEKQKAILELK 534 Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 1/97 (1%) Query: 699 GLLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPE 758 +LE F R ++ E+ + E + G + R+KGLGE++P + + +D Sbjct: 502 YILETPLFRVRNKKITTYCYSEEEKQKAILELKGGCEVTRFKGLGEISPNEF-KGFIDIN 560 Query: 759 SRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEEN 795 S ++ +V + + + MG RR FI EN Sbjct: 561 SIKLTKVDLFNIKEIKEKLGFYMGQNTPERRNFIMEN 597 >UniRef50_Q6RCM1 DNA topoisomerase 2 n=2 Tax=Trichomonas vaginalis RepID=Q6RCM1_TRIVA Length = 1458 Score = 431 bits (1108), Expect = e-119, Method: Composition-based stats. Identities = 155/710 (21%), Positives = 270/710 (38%), Gaps = 82/710 (11%) Query: 8 SSIKVLKGLDAVRKRPGMYIGDTDD---------------------GTGLHHMVFEVVDN 46 L + V RP YIG + GL+ + E++ N Sbjct: 15 EQYVKLTHREHVLTRPDSYIGSIEPRECKMWVCNEDGKFEFREISYVPGLYKIFDEILVN 74 Query: 47 AIDEALAGH-CKEIIVTIHA-DNSVSVQDDGRGIPTGI--HPEEGV--SAAEVIMTVLHA 100 A D I + N +SV +DG+GI T P + E I + L Sbjct: 75 AADNKQRDPPLTTIKGEVDPAQNRISVWNDGKGISTQKQFSPNDNCEYYIPEFIFSQLLT 134 Query: 101 GGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQR--EGKIHRQIYEHGVP--QAPLAV 156 ++D KV+GG +G G + N S+K + I EG ++Q + Q P Sbjct: 135 SSNYNDKQEKVTGGRNGYGAKLANIFSKKFHINIYNADEGINYQQTITDNMTNIQPPKLK 194 Query: 157 TGETEKTGTMVRFWPSLETFT--NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKED 214 G+ + + T + FWP LE F +T+ +++ +R+ +L+ + V I + + Sbjct: 195 NGKGKGSYTEISFWPDLERFNLQTITKDHVDLIRRRVYDLADILPKVKIFWNGNQVPIK- 253 Query: 215 HFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIP 274 +E K ++ K + P + EK G ++ + + + F N + Sbjct: 254 --KWEDYCKVYL------KEDVKPLVCEVKNEK-GYTWKIGVAPSKSREFQQISFVNCVA 304 Query: 275 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 334 +GGTH+ +T+ + Y+ + KV + L V V +P F S Sbjct: 305 TSNGGTHVDVVVNQITKYITDYLKNR---RSGKVETKPSVVKNFLYVFVDSLVINPSFDS 361 Query: 335 QTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRR 394 QTK++L + K + ++ + + +L+ A + + A +E + A + Sbjct: 362 QTKERLTLDQKKLKDDCKLPDNFLDKILKTDIVA-----LVTEYANFKEQRKVANMKGTK 416 Query: 395 KGALDLAGLPGKLADCQ---ERDPALSELYLVEGDSAGGSAKQGR---NRKNQAILPLKG 448 KG L + KL D + + L L EGDSA +A G R + PL+G Sbjct: 417 KGRL----IINKLEDANMAGKAESLKCTLILTEGDSAKATAVTGLATIGRDYYGVFPLRG 472 Query: 449 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPD---KLRYHSIIIMTDADVDGSH 505 K+LN K+ + E+ +I +G N D +LRY SI+IM D DVDGSH Sbjct: 473 KLLNTRDISAKKLSENDEIQNIIKIMGLDPMEKYENDDSMKRLRYGSIMIMADQDVDGSH 532 Query: 506 IRTLLLTFFYRQMPEIV-ERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGA 564 I+ L++ F + P ++ +R + P+ KV KG ++ + ++ A + Sbjct: 533 IKGLIINFVHSMWPNLLKKRNFITEFITPIVKVTKGNNKKGAISFFTIPEFSQWKAANN- 591 Query: 565 TLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQ 624 N + S ++ + + + K IY E ++ Sbjct: 592 ----NGKGYKMKYYKGLAT-STAEEAKEYFSNISKHK-----KVFIYTNENDEERINLAF 641 Query: 625 TVTR------WVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRT 668 R W+ L + + K+ + E LF R Sbjct: 642 AKKRADDRKNWLAQLDANETYLGTKDTHIKYSDFVDKELILFSSYANYRA 691 >UniRef50_D0MV61 DNA topoisomerase 2 n=2 Tax=Eukaryota RepID=D0MV61_PHYIN Length = 1329 Score = 430 bits (1106), Expect = e-119, Method: Composition-based stats. Identities = 139/575 (24%), Positives = 246/575 (42%), Gaps = 57/575 (9%) Query: 30 TDDGTGLHHMVFEVVDNAIDEALAGH-CKEIIVTIHADN-------SVSVQDDGRGIPTG 81 + L+ + E++ NA+D + + + V I + +SV +DG+GIP Sbjct: 22 VEYVPALYKIFDEIIVNAVDNKVRDPSMRHLDVIIEPGSKANGYRPWISVYNDGKGIPVK 81 Query: 82 IHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELV--IQREGK 139 H E V E+++ L G FDD + +++GG HG G + N S++ + G Sbjct: 82 FHKTEKVYVPELVLGHLLTGSNFDDTAARLTGGRHGYGAKLTNIFSKEFVVETGDTSMGL 141 Query: 140 IHRQIYEHGV-PQAPLAVT---GETEKTGTMVRFWPSLET--FTNVTEFEYEILAKRLRE 193 ++Q++ + + + +T G+ K T V F P LE +T +L KR+ + Sbjct: 142 RYKQVWHNNMRTRGEPEITEFSGKDAKDFTKVSFSPDLEKFEMEKLTASMTRVLKKRVYD 201 Query: 194 LSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFV-----EYLNKNKTPIHPNIFYFSTEKD 248 ++ S V + L K+ +E IK F ++K P + S+ D Sbjct: 202 VAGCLSDVQVTLNGKKLPIS---GFESYIKTFRYSTTNNPVSKTAKPSKDSDDAASSGSD 258 Query: 249 GIGVEVALQWNDG-----FQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYS 303 I V +W G F N + GG+H+ + R + +++K Sbjct: 259 YIYSRVNKRWKIGVLPSDVGFVQVSFVNGMSALRGGSHVGYVSDQICRRVAEHVNK---- 314 Query: 304 KKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLE 363 K ++S + + + ++ ++ +P F SQ K+ + S ++E L + +L Sbjct: 315 KFPELSVSTAQVKPHMAIFINCQIENPTFDSQMKEFMTSRPPTFGSTCVLSERLLKLVLS 374 Query: 364 NPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERD---PALSEL 420 + +V +++ +ARAR+ A ++++ + +P KL D + L Sbjct: 375 DSG----IVERVVQSARARQRAALLKKVSSTRAKSSSVNVP-KLEDANLAGGARSSECSL 429 Query: 421 YLVEGDSAGGSAKQGR---NRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCG 477 L EGDSA A G R + PL+GK+LNV A ++ + E A L T LG Sbjct: 430 ILTEGDSAKALAVAGLAVVGRDQYGVFPLRGKLLNVRDATVAQLGKNAEFAHLCTILGLR 489 Query: 478 IGRDE---YNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVER-GHVYIAQPP 533 + KLRY +I MTD D DGSHI+ LL F+ PE+++ G + P Sbjct: 490 MDEHYGTEEARQKLRYGRVIAMTDQDHDGSHIKGLLFNLFHTFWPELLKEGGFISEFITP 549 Query: 534 LYKV---------KKGKQEQYIKDDEAMDQYQISI 559 + KV ++G + + +++ SI Sbjct: 550 IIKVSPTSKRVGTERGLETRRFFSLPEYFEWKASI 584 >UniRef50_Q5UQE6 DNA topoisomerase 2 n=3 Tax=root RepID=TOP2_MIMIV Length = 1263 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 130/566 (22%), Positives = 221/566 (39%), Gaps = 57/566 (10%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTDD--------------------------GTGLHHMV 40 + + + P YIG ++ GL+ + Sbjct: 15 EEKYQKKNLHEHILHSPDTYIGSIEEKTCNMWIFNESAGEDDAKIIFKEITYVPGLYKIY 74 Query: 41 FEVVDNAID-EALAGHCKEIIVTIH-ADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVL 98 EV+ NA D C I V I +SV ++G GI IH E + +I L Sbjct: 75 DEVIVNAADHNKRCQTCNIIKVDIDQKTGQISVWNNGDGIDVAIHKEHNIWVPSMIFGEL 134 Query: 99 HAGGKFDDNSYKVSGGLHGVGVSVVNALSQKL--ELVIQREGKIHRQIYEHGV-PQAPLA 155 +D N K GG +G G + N S + E V +GK Q + + + + Sbjct: 135 LTSTNYDKNEEKTVGGKNGFGAKLANIYSVEFTIETVDANKGKKFFQRFTNNMYDKEEPK 194 Query: 156 VTGETEKTGTMVRFWPSLETF--TNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE 213 ++ + + T + F P + F + + + KR+ +L+ + + + DK+ + Sbjct: 195 ISSFKKSSYTKITFIPDFKKFGLKCLDDDTLALFKKRVFDLA-MTTNAKVYFNDKQIVQN 253 Query: 214 DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNI 273 + Y G + +++K I T + V V D + F N+I Sbjct: 254 NFKKYVG---LYFPEGSQHKVVID------DTTHERWKVGVIYDPTDQLEHQNISFVNSI 304 Query: 274 PQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFS 333 GGTH+ + L + K K V +E LI V + +P F Sbjct: 305 CTSRGGTHVEQVVGQIVNGLKTAIVK----KAKNVQIKPAMIKENLIFFVDATIVNPDFD 360 Query: 334 SQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTR 393 +QTK+ L + ++ E + +++ +II A+ARE A ++ + Sbjct: 361 TQTKEYLTKKAANFGSKFEVTEKFIKGVIKTGV-----CDQIIANAKAREEANLSKTDGK 415 Query: 394 RKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRN---RKNQAILPLKGKI 450 +G + L ++ L L EGDSA A G N R + PL+GK+ Sbjct: 416 GRGPVRYEKLYNA-HKAGTKEGYKCTLILTEGDSAKTFAMSGLNVIGRDYYGVFPLRGKL 474 Query: 451 LNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLL 510 LNV A K+ ++E+ + +G G+ + LRY SI+I+ D DVDG HI+ L+ Sbjct: 475 LNVRDASPKKIADNEEITAIKKIVGLEQGKVYDDLKGLRYGSIMILADQDVDGYHIKGLI 534 Query: 511 LTFFYRQMPEIVE-RGHVYIAQPPLY 535 + F + P +V+ G + PL Sbjct: 535 MNFIHCFWPSLVKYEGFIQSFATPLL 560 >UniRef50_Q9HGH7 DNA topoisomerase 2 (Fragment) n=1 Tax=Pichia kudriavzevii RepID=Q9HGH7_ISSOR Length = 804 Score = 427 bits (1099), Expect = e-118, Method: Composition-based stats. Identities = 131/589 (22%), Positives = 232/589 (39%), Gaps = 72/589 (12%) Query: 30 TDDGTGLHHMVFEVVDNAIDEALAGH-CKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEG 87 GL + E++ NA D + K I V I+ + N +SV++DG+GIP IH +E Sbjct: 9 VSIVPGLFKIFDEILVNAADNKIRDPSMKRIDVIINEEENVISVKNDGKGIPIEIHDKEN 68 Query: 88 VSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLEL--VIQREGKIHRQIY 145 + E+I L +DD+ KV+GG +G G + N S + + GK + Q++ Sbjct: 69 IYIPELIFGNLLTSSNYDDDQKKVTGGRNGYGAKLCNIFSTEFTVHTADMSHGKEYTQVW 128 Query: 146 EHGVPQ--APLAVTGETEKTGTMVRFWPSLETFT--NVTEFEYEILAKRLRELSFLNSGV 201 + + + P + + + T + F P L F + + +R+ +L G+ Sbjct: 129 RNNMSEVGKPKILNFKKKNEFTEIIFKPDLSKFGMEKLDHDILGVFKRRVYDLCGSVRGI 188 Query: 202 SIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKT--------------------------- 234 + L + + Y ++ +V+ +NK+K Sbjct: 189 RVTLNGELLKINNFKQY---VELYVKAINKSKEERPHIPVKIETEDGTPLNGESEANTET 245 Query: 235 ------PIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAA 288 ++ N+ E E+A +DG N F N+I GGTH+ Sbjct: 246 SSTPEPSLNENLPTIVHEIINDRWEIAFCISDG-SFNQVSFVNSIATTLGGTHVDDVANM 304 Query: 289 MTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSA 348 + + + ++ K + + ++ V +P F+ QTK+ L + K Sbjct: 305 LCGKITEQIKRKNK----KAIIKPFQIKSKMFLFINCLVENPAFTFQTKEYLTTQLSKFG 360 Query: 349 VEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGL-PGKL 407 ++ L E ++ KI+ IID A + + + GA KL Sbjct: 361 GKRL---ELPEKFIK-----KILNTGIIDEVLDIVQANADKALKKTDGAKKSRITGYPKL 412 Query: 408 ADCQE---RDPALSELYLVEGDSAGGSAKQGR---NRKNQAILPLKGKILNVEKARFDKM 461 D + R+ L L EGDSA A QG R PL+GK+LNV +A D++ Sbjct: 413 EDANKAGTREGYKCTLILTEGDSAKSLAVQGLAVVGRNYYGCFPLRGKVLNVREASTDQI 472 Query: 462 LSSQEVATLITALGCGIGRDE--YNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMP 519 + + + + +G + + LRY I+IM D D DGSHI+ LL+ F P Sbjct: 473 MKNGAIQAIKQIMGLQHKKHYGPDDIKSLRYGRIMIMADQDHDGSHIKGLLINFLEASFP 532 Query: 520 EIVE-RGHVYIAQPPLYKVK-----KGKQEQYIKDDEAMDQYQISIALD 562 ++E + P+ K+ ++ +Q++ + Sbjct: 533 GLLEIPNFLIEFITPIVKITIMSGPNRRKTIPFYSMPEYEQWRETEGST 581 >UniRef50_Q4RIW2 DNA topoisomerase 2 (Fragment) n=1 Tax=Tetraodon nigroviridis RepID=Q4RIW2_TETNG Length = 1568 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 115/571 (20%), Positives = 212/571 (37%), Gaps = 92/571 (16%) Query: 10 IKVLKGLDAVRKRPGMYIGDTDDGT----------------------------------- 34 + L+ + RP YIG + T Sbjct: 18 YQKKTQLEHILLRPDTYIGSVEPVTQVGPGSTAPRPKTTPFLEYSCPIWFFFQQMWVFDE 77 Query: 35 -------------GLHHMVFEVVDNAIDEALAGH-CKEIIVTIHAD-NSVSVQDDGRGIP 79 GL+ + E++ NA D I +TI + N++S+ ++G+GIP Sbjct: 78 EVGMNQREVTYVPGLYKIFDEILVNAADNKQRDKNMTAIKITIDPESNTISIWNNGKGIP 137 Query: 80 TGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGK 139 H +E + +I L +DD+ KV+GG +G G + N S K + + Sbjct: 138 VVEHKDEKMYVPALIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACKEY 197 Query: 140 IH--RQIYEHGVPQA-PLAVTGETEKTGTMVRFWPSLETFT--NVTEFEYEILAKRLREL 194 H +Q +++ + + V T V F P L F + + +L +R ++ Sbjct: 198 RHSFKQTWQNNMTKTSEPKVKLFDGDDFTCVTFQPDLSKFKMEKLDKDTMALLTRRAYDV 257 Query: 195 SFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEV 254 + GV + L K+ G +++V+ K+K E EV Sbjct: 258 AGSCRGVKVTLNGKKLPV-------NGFRSYVDLYVKDKLDETGVALKVVNETVNERWEV 310 Query: 255 ALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDD 314 L ++ + I F N+I GG H+ + L + K+ KA V+ Sbjct: 311 CLTLSEKGFQQI-SFVNSIATTKGGRHIDYVVDQIVAKLIEVVKKKN---KAGVTVKPFQ 366 Query: 315 AREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTD------- 367 + + V+ + +P F SQTK+ + + +++ + P Sbjct: 367 VKNHIWVFVNALIENPSFDSQTKENMTLQTKSFGSKCPLSDKFIRAVRTPPGRPSSCTRA 426 Query: 368 --------AKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPG--KLADCQE---RD 414 + I+++ + ++ ++ ++ + + G KL D + + Sbjct: 427 VKSRCLCHLQATNCGIVESILNWVKFKAQTQLNKKCSSVKHSKIKGIPKLDDANDAGGKH 486 Query: 415 PALSELYLVEGDSAGGSAKQGR---NRKNQAILPLKGKILNVEKARFDKMLSSQEVATLI 471 + L L EGDSA A G R + PL+GKILNV +A +++ + E+ +I Sbjct: 487 SSECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREATHKQIMENAEINNII 546 Query: 472 TALGCGIGRDEYNPD---KLRYHSIIIMTDA 499 +G + + + LRY I+IMTD Sbjct: 547 KIVGLQYKKSYDDAESLRSLRYGKIMIMTDQ 577 >UniRef50_C4R475 DNA topoisomerase 2 n=1 Tax=Pichia pastoris GS115 RepID=C4R475_PICPG Length = 1344 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 134/654 (20%), Positives = 249/654 (38%), Gaps = 90/654 (13%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTDDG----------------------TGLHHMVFEVV 44 S + L L+ + KRP YIG + GL + E++ Sbjct: 64 SDQYQKLSQLEHILKRPDTYIGSVEKHESEQWIYNKETESMERKVVSIVPGLFKIFDEIL 123 Query: 45 DNAIDEALAGH-CKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGG 102 NA D + K I VTI + N + V++DG+ E+I L Sbjct: 124 VNAADNKIRDPSMKNIEVTIKPEENLIEVKNDGK---------------ELIFGNLLTSS 168 Query: 103 KFDDNSYKVSGGLHGVGVSVVNALSQKLELV--IQREGKIHRQIYEHGVPQAPLAVTGET 160 ++D+ KV+GG +G G + N S + + + GK++ Q + + + V Sbjct: 169 NYNDDQKKVTGGRNGYGAKLCNIFSTEFIVETYDKSSGKLYTQRWSQNMGKTDKPVIKSI 228 Query: 161 EK--TGTMVRFWPSLET--FTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHF 216 +K T V F P L T + E +L +R+ +L +S++L ++ + Sbjct: 229 KKATEYTKVSFRPDLAKFNMTELDEDILGVLRRRVFDLCGSVRDISVKLNGEKLKIRNFK 288 Query: 217 HYEGGIKAFVEYLNKNKTPIHPN-------------IFYFSTEKDGIGVEVALQWNDGFQ 263 Y ++ +V+ L PI + E+A +D Sbjct: 289 QY---VEMYVKALEHKNDPIKTEDSSLLPPPSSSSPSQTIVYQTLNDRWEIAFAVSDS-T 344 Query: 264 ENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVV 323 N F N+I GGTH+ + + + + + K + + + Sbjct: 345 FNQVSFVNSIATTSGGTHVNFIADQIVKKIEKEIKTKNK----KAMIKPFQIKNNMFLFI 400 Query: 324 SVKVPDPKFSSQTKDKLVSSEVKSAVEQ-QMNELLAEYLLENPTDAKIVVGKIIDAARAR 382 + V +P F+SQTK++L + + ++ ++ + + +L +V I+D A Sbjct: 401 NCLVENPAFTSQTKEQLTTRASQFGGKKTEVPDDFIKKILRTG-----IVDAILDIAAMN 455 Query: 383 EAARRAREMTRRKGALDLAGLPGKLADCQE---RDPALSELYLVEGDSAGGSAKQGR--- 436 + RK + KL D + ++ L L EGDSA A G Sbjct: 456 ADKALKKNDGSRKNRITG---YPKLEDANKAGTKEGYKCTLILTEGDSASSLAVAGLAVV 512 Query: 437 NRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDE--YNPDKLRYHSII 494 R + PL+GK+LNV +A D+++ + E+ + +G ++ N + LRY I+ Sbjct: 513 GRDYYGVYPLRGKMLNVREASADQIMKNAEIQAIKQIMGFQHKKNYTPENINSLRYGHIM 572 Query: 495 IMTDADVDGSHIRTLLLTFFYRQMPEIVE-RGHVYIAQPPLYKVK-----KGKQEQYIKD 548 IMTD D DGSHI+ L++ F P +++ + P+ KV + ++ Sbjct: 573 IMTDQDHDGSHIKGLIINFLESSFPGLLKVPNFLLEFITPIVKVTITSGPEKRKVIPFYS 632 Query: 549 DEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYP 602 + ++ + E + + S+ + K + ++ P Sbjct: 633 MPEYEAWR-EQNTESFKQKYYKGLGTSLAEEMREYFSQLDKHMKTFHALQDVDP 685 >UniRef50_C7PPD8 DNA topoisomerase type IIA subunit B region 2 domain protein n=23 Tax=Bacteria RepID=C7PPD8_CHIPD Length = 640 Score = 424 bits (1089), Expect = e-117, Method: Composition-based stats. Identities = 182/632 (28%), Positives = 294/632 (46%), Gaps = 65/632 (10%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGT----GLHHMVFEVVDNAIDEALAGHC 56 +S +Y SI+ L + +R RPGMYIG DG+ G++ ++ EV DN IDE G Sbjct: 9 LSAAYTEDSIRSLDWREHIRLRPGMYIGKLGDGSSMDDGIYILLKEVADNCIDEHTMGFG 68 Query: 57 KEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 116 K+I + + +++V+++D GRGIP G +++ ++ G K+D +++ S GL+ Sbjct: 69 KQIDIRV-TEHNVTIRDYGRGIPLGK--------VVDVVSKINTGAKYDSKAFQKSVGLN 119 Query: 117 GVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETF 176 GVG VNALS + REG+ +E G +E GT+V F P F Sbjct: 120 GVGTKAVNALSSYFRVESFREGRGKVAEFERGNLTKEHKEANTSEPNGTLVTFTPDDTVF 179 Query: 177 TNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPI 236 N F E L ++ FLN+G++I K+ + + G+ ++ Sbjct: 180 RNY-RFIPEFLENQIWNYCFLNAGLTISFNGKK------YISKNGLLDLLQRKTNEDELR 232 Query: 237 HPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAY 296 +P I + E +EVA+ + + E Y F N GGTHLA FR A +TL + Sbjct: 233 YP-IIHLKGED----IEVAITHENQYGEEYYSFVNGQHTTQGGTHLAAFREAFVKTLRDF 287 Query: 297 MDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS-------SEVKSAV 349 K D R + A +SV+V +P F SQTK KL S +K+ V Sbjct: 288 YKK---------DYEATDIRASICAAISVRVQEPVFESQTKTKLGSLTVFENGPSMKAFV 338 Query: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPG-KLA 408 +++ L ++L +NPT A+ + +I + R R+ +++ + A L KL Sbjct: 339 LDFLSKHLDDFLHKNPTTAEALKKRIEQSERERKELAGIKKLANERAKK--ANLHNRKLR 396 Query: 409 DCQ---------------ERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 453 DC+ E + +++ EGDSA GS + RN + QA+ L+GK LN Sbjct: 397 DCRIHLNEEVSGKDKNDLETKRLNTTIFITEGDSASGSITKSRNVETQAVFSLRGKPLNS 456 Query: 454 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTF 513 + ++E L AL E + LRY+ I++ TDADVDG HIR LLLTF Sbjct: 457 FGLTKKIVYENEEFNLLQHALNI-----EEGLEGLRYNRIVVATDADVDGMHIRLLLLTF 511 Query: 514 FYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAP 573 F + P++V+ GH+YI + PL++V+ +Q Y DE + + Sbjct: 512 FLQFFPDLVKNGHLYILETPLFRVRNKQQTIYCYTDEERIKAIKKLGNKPEITRFKGLG- 570 Query: 574 ALAGEALEKLVSEYNATQKMINRMERRYPKAM 605 ++ + +++ + +I + K + Sbjct: 571 EISPDEFANFINDDMKVEPVILSKDTHIQKLL 602 Score = 52.7 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 2/104 (1%) Query: 699 GLLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPE 758 +LE F R +++ ++ +K+ I R+KGLGE++P++ D Sbjct: 526 YILETPLFRVRNKQQTIYCYTDEERIKAIKKLGNKPEITRFKGLGEISPDEFANFIND-- 583 Query: 759 SRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANI 802 ++ V + +L MG + R+ FI N ++ Sbjct: 584 DMKVEPVILSKDTHIQKLLEYYMGKNTQTRQEFIIGNLRYEKDL 627 >UniRef50_O41065 A583L protein n=7 Tax=Chlorovirus RepID=O41065_PBCV1 Length = 1061 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 147/643 (22%), Positives = 251/643 (39%), Gaps = 76/643 (11%) Query: 8 SSIKVLKGLDAVRKRPGMYIGDTDD--------------------GTGLHHMVFEVVDNA 47 S + L + V RP YIG L + E++ N+ Sbjct: 2 SRYQKLTQREHVLARPDTYIGSVAPQTKNEWVYVDGKIIRKDVTYSPALLKIFDEIITNS 61 Query: 48 IDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDN 107 D ++ + SVSV +DG IP H E E+I L AG FDD Sbjct: 62 ADCYNRDKKLTVLKVCIDEKSVSVHNDGCNIPIEKHDVEKCYIPELIFGHLLAGENFDDT 121 Query: 108 SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQ-APLAVTGETEKTGTM 166 + G +G+G N S+K ++ I K ++Q +E+ + + VT ++ + Sbjct: 122 EQRTGAGRNGIGSKATNIFSKKFDVEICDGKKKYKQSWENNMSVMSKPKVTTCSKDSYIT 181 Query: 167 VRFWPSLETFT--NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKA 224 F+P E F + + I+ +R+ +++ + + V + L KR ++ E Sbjct: 182 TTFFPDFERFGIDSFDDDTMSIMVRRVYDMAAVLNKVKVMLNGKRLEIKNT---EDYFSL 238 Query: 225 FVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAG 284 +V + K E +VA+ +D F F N++ GGTH+ Sbjct: 239 YVGNKTETKRAF---------EHTPENWDVAVSCSDEFTP--VSFVNSVVT-RGGTHVNA 286 Query: 285 FRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSE 344 + K K+ + + V+ V +P F SQTK+ L S Sbjct: 287 VTD------AVAKAVVEAAAKKKIVVKPMTVKGRMFVFVNATVVNPTFDSQTKEILTSRN 340 Query: 345 VKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLA--G 402 + + + +++ +I R + +E+ + GA G Sbjct: 341 ARVTLSDTFVKK----------AVGVLLDAVIQETNVRTSLVDQKELKKTDGAKKSRVSG 390 Query: 403 LPGKLADC---QERDPALSELYLVEGDSAGGSAKQGRN---RKNQAILPLKGKILNVEKA 456 +P KL D + L L EGDSA A G + R+ + PL+GK+LNV A Sbjct: 391 IP-KLNDAAWAGTNHSKMCTLILTEGDSAATLAIAGLSVVGRERYGVFPLRGKLLNVRDA 449 Query: 457 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYR 516 + ++E+ L LG G+ + LRY ++IMTDADVDG+HI L++ FF+ Sbjct: 450 SVASITKNEEITALKQILGLQTGKVYKDTSSLRYGHVMIMTDADVDGTHISGLVMNFFHS 509 Query: 517 QMPEIVE-RGHVYIAQPPLYKVKKGKQ----------EQYIKDDEAMDQYQISIALDGAT 565 P ++E G + P+ KKGK E ++K + +YQI T Sbjct: 510 CFPSLLEIPGFLKKFITPIVVAKKGKDVREFYSLPDYEDWVKTTKDYSKYQIKYYKGLGT 569 Query: 566 LHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKE 608 + + + L+ L+ + T ++R + K ++ Sbjct: 570 SSSTDAKHYFSN--LKTLMKTFTWTSDSGELIDRSFNKTRAED 610 >UniRef50_C7U0P4 DNA topoisomerase II n=2 Tax=unclassified Phycodnaviridae RepID=C7U0P4_9PHYC Length = 1072 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 132/592 (22%), Positives = 229/592 (38%), Gaps = 78/592 (13%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTDDGTGLH----------------------HMVFEVV 44 S++ L ++ V KRP Y+G + G + + E++ Sbjct: 2 GESVQKLTHIEHVLKRPDSYVGPVEIGCEPYWIFQKTDNQFKKKSLNYSPALLKIFDEIL 61 Query: 45 DNAIDEALAGH--CKEIIVTIHAD-NSVSVQDDGR--GIPTGIHPEEGVSAAEVIMTVLH 99 NAID C I I + +V+++++G G+ +H +EG+ E+ L Sbjct: 62 VNAIDRNSLHPKSCTLISAGIDKETGAVTIENNGPLGGVGVRMHEKEGIWNPELTFGHLL 121 Query: 100 AGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRE--GKIHRQIYEHGVPQA-PLAV 156 +DDN ++ GG +G G + N S + +VI+ + + Q + + + P + Sbjct: 122 TSTNYDDNKKRIVGGRNGYGAKLTNIYSSEFSIVIKDGETKQCYTQKWNNNMTVCHPPKI 181 Query: 157 TGETEKTGT-MVRFWPSLETFT--NVTEFEYEILAKRLRELSFLN-SGVSIRLRDKRDGK 212 T + T + + F P + F + Y+I KR+ + + ++ + + K Sbjct: 182 TKHSASTSSVSITFIPDWKRFGMNKMDNNIYKIFEKRVWDANICTTPNCKVKFQGEALPK 241 Query: 213 EDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFST-EKDGIGVEVALQWNDGFQENIYCFTN 271 Y +H + S+ D V + N F N Sbjct: 242 TSFEAY---------------AKMHEGVSEVSSVTTDRWSVCIGPSEN---GLEQVSFVN 283 Query: 272 NIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPK 331 I GGTH+ + + + M K K+ + V + +P Sbjct: 284 GICTTKGGTHVDHVASYIASGIIDEMAK-------KIKLKPQQVKNTFNIFVKATLENPT 336 Query: 332 FSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREM 391 FSSQ K + S + + + + + I + A + +E+ Sbjct: 337 FSSQVKSECTSKAQDFGSKFEPPKNFVK---------NALKTGIQEELTALSKFKEMKEL 387 Query: 392 TRRKGALD--LAGLPGKLADCQERD---PALSELYLVEGDSAGGSAKQGRN---RKNQAI 443 + GA + G+P KL D + L + EGDSA A G + R + + Sbjct: 388 KKTDGARKSKITGIP-KLDDANKAGTAQSGKCTLIVTEGDSAKTLAVAGLSVVGRDHYGV 446 Query: 444 LPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDG 503 PL+GK NV A ++ S+QE L LG G+D + +LRY ++IMTDAD DG Sbjct: 447 FPLRGKCKNVRDASVAQLTSNQEFNDLKKILGLQQGKDYQDVSELRYGRLMIMTDADNDG 506 Query: 504 SHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQY 555 SHI+ L+L + P +++ G V P+ K KG Q + D A + Sbjct: 507 SHIKGLILNMIHYFWPSLLKLGFVVSMVTPIIKASKGTQSKSFYTDSAFRSW 558 >UniRef50_B8C981 DNA topoisomerase 2 (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8C981_THAPS Length = 1179 Score = 411 bits (1057), Expect = e-113, Method: Composition-based stats. Identities = 129/619 (20%), Positives = 247/619 (39%), Gaps = 82/619 (13%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTDDG----------------------TGLHHMVFEVV 44 + L+ + RP MYIG T+ L + E++ Sbjct: 4 EDTYSRKTPLEHILLRPSMYIGPTEHADPKSCSSTNSPWTMQRQELSYVPALLKIFDEIL 63 Query: 45 DNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKF 104 NA D L +D +S+ ++G+ IP IH +E + E++ L G F Sbjct: 64 VNASDNRLRHPGSCNHFPSSSDPYISITNNGKSIPIQIHRKENMYIPELLFGHLLTGSNF 123 Query: 105 DDNSYKVSGGLHGVGVSVVNALSQKLELVIQREG------KIHRQIYEHGVPQAPLAVT- 157 +D+ +++GG HG G + N S++ + I K ++Q++E + A Sbjct: 124 NDDQKRLTGGRHGYGAKLTNVFSKQFVVEIGDGHSSKGKIKTYKQVWEDNMSVCHEAEVV 183 Query: 158 --------GETEKTGTMVRFWPSLETFTN------VTEFEYEILAKRLRELSFLNSG-VS 202 G+ T + F P L T + E EY+++ +R+ +++ + G ++ Sbjct: 184 SRDKKDADGKGNLDYTRISFIPDLARLTGDRKTEMLPEEEYQLMKRRVVDIAGCSGGKLT 243 Query: 203 IRLRDKRDGKEDHFHYEGGIKAFVEYL---NKNKTPIHPNIFYFSTEKDGIGVEVALQWN 259 + L + G + + + TP+ P +++ K EVA+ + Sbjct: 244 VTLNGEEISV-------SGFEDYANLYRQPESSATPLPPMVYH----KLNSRWEVAVGLS 292 Query: 260 DGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKE------GYSKKAKVSATGD 313 + F N + GGTH+ +++ + +++ + +S + Sbjct: 293 ETKSLESISFVNGMNTSRGGTHVDALARQISQYIADHINNKMARQLDNLQSGQPISVSVR 352 Query: 314 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVG 373 R L V+ + +P F SQ K+ L S+ +++ L+ +++ Sbjct: 353 MVRRHLFLCVNCLIENPSFDSQMKECLTSNPDNFGSHFELSNSFLRKLVGPGIVEEVL-- 410 Query: 374 KIIDAARAREAARRAREMTRRK----GALDLAGLPGKLADCQERDPALSELYLVEGDSAG 429 ++ A+ AR +E T+R+ L+ A L G D +P L L EGDSA Sbjct: 411 RMAMGAQQVNMARLLKEQTKRQVLSIPKLEDANLAGS-TDIGTENP--CTLILTEGDSAK 467 Query: 430 GSAKQGR---NRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPD 486 A G R + + PL+GK +NV ++ ++ E+ + LG + Sbjct: 468 ALAVAGLEVVGRDHYGVFPLRGKFMNVRNVTVKQLATNAELKAMCAILGLQFEKSYDTAK 527 Query: 487 ---KLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVE---RGHVYIAQPPLYKVKKG 540 +LRY +++MTD D DGSHI+ L++ F P +++ R + + PL K K Sbjct: 528 ERQELRYGHVMLMTDQDADGSHIKGLIMNMFRFFWPALLKPPSRPFMSMFITPLLKATKK 587 Query: 541 KQEQYIKDDEAMDQYQISI 559 +++ ++ +Y Sbjct: 588 GKKKDSISFFSVAEYNSWR 606 >UniRef50_Q2JC55 DNA topoisomerase II n=4 Tax=Actinomycetales RepID=Q2JC55_FRASC Length = 658 Score = 405 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 158/391 (40%), Positives = 224/391 (57%), Gaps = 3/391 (0%) Query: 4 SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTI 63 Y + SI + GL AVR+ P MYIG T GLHH+VFE++DNA+DE G C I V + Sbjct: 13 EYTARSIVLFSGLTAVRRNPSMYIGSTGT-EGLHHLVFELIDNAVDEFAVGTCGLIEVVL 71 Query: 64 HADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVV 123 HAD S SV DDGRGIP HP+ V A +V+MT LH+GGKF ++Y+ S GLHGVG+S V Sbjct: 72 HADGSCSVSDDGRGIPVDEHPDLRVPALQVVMTTLHSGGKFQGDTYRRSAGLHGVGLSCV 131 Query: 124 NALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFE 183 NALS+ L + + R+G ++ Q Y G P + + G +++ GT+VRF P + F F Sbjct: 132 NALSEWLRVEVHRDGGMYTQSYGRGEPTTTVDMVGTSDRHGTLVRFRPDMMIFD-AAAFV 190 Query: 184 YEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYF 243 +LA R+ EL+FL+ G+ +RL D+R E+ F Y G+K F+ N++ +HP Sbjct: 191 TGVLAARMAELAFLHPGLVLRLVDERTDTEETFDYVEGVKGFLTQRNRDAEVVHPEPIII 250 Query: 244 STEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEG-Y 302 + E+ + ++VALQW +G+ E + F N + GG H+ R + +N + Sbjct: 251 TAERSDLVLDVALQWTEGYAEEMSSFVNAVRTDQGGAHVDALRTGLASAINDHASMNRML 310 Query: 303 SKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLL 362 A T +D EGL AVVS+++ P+F QTK +L S EV V + + E +A L Sbjct: 311 DSFAGERITTNDILEGLTAVVSLRMDSPRFDGQTKRRLQSPEVGPFVRRAVAETVAATLR 370 Query: 363 ENPTDAKIVVGKIIDAARAREAARRAREMTR 393 P VV + +DA RAR AAR A R Sbjct: 371 REPGLGARVVARALDATRARLAARLAGRAVR 401 >UniRef50_B1BBK7 DNA topoisomerase n=5 Tax=root RepID=B1BBK7_CLOBO Length = 1417 Score = 404 bits (1037), Expect = e-111, Method: Composition-based stats. Identities = 181/768 (23%), Positives = 325/768 (42%), Gaps = 62/768 (8%) Query: 8 SSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADN 67 + +K LKG + VRKR + +G DD G H +FE+V N+ID G I V H D Sbjct: 2 ADLKRLKGSERVRKRVSVMMGS-DDIRGCQHTLFEIVSNSIDRHRKGFGNYIKVIKHEDL 60 Query: 68 SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALS 127 S ++ D G+P + +E ++ + VL+AG +D NS + G++G+G+ S Sbjct: 61 SYTIIDHADGLPMDWNDKENAYNWDLALKVLYAGDNYDANS--TALGINGLGLCSSQYAS 118 Query: 128 QKLELVIQREGKIHRQIYEHGVPQAP-----------------------LAVTGETEKTG 164 + +E+V ++ K + + G P L + KTG Sbjct: 119 EYMEVVSYKDDKKYTVKCKKGRPIDKNTGEFICEDDDTLFAREQGQRVLLVESNSENKTG 178 Query: 165 TMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKA 224 T + + P LE FTN+ + + + +L + + +N + I + D+++ K +YE GIK Sbjct: 179 TYIHYKPDLEVFTNI-DISIDWINDKLDKQAMVNKELKIEVYDEKEDKLYTHYYESGIKD 237 Query: 225 FVEYLNKNKTPIHPNIFYFSTEKDGIG----------VEVALQWNDGFQENIYCFTNNIP 274 +++ ++ + ++ YF+ + G E+AL +N+ + + N+ Sbjct: 238 YIKTISDDNN--FSDVIYFTEKGKGRDKVDKPEYDYNYEIALVFNNEIN-KLEYYHNSSE 294 Query: 275 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 334 GG+ A T +N Y K + D ++ LI V+S +++ Sbjct: 295 LLQGGSTADAINLAFTYAINEYAKDNNLFNKNESKIKFTDIQDSLICVISSFSTMTSYAN 354 Query: 335 QTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRR 394 QTK + + +K Q + E L Y +EN +A +V +I+ RA + A + + ++ Sbjct: 355 QTKLSIDNKFIKDFTNQSLKEKLKLYFIENKLEAGRIVNQILINKRANDKAEKTKLNIKK 414 Query: 395 K-GALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 453 C D +++ELYL EG SA GS GRN K QA + GK+L++ Sbjct: 415 TLQTKSNFDDTDNFYACTSNDKSITELYLAEGSSAQGSIVMGRNSKFQACYHVGGKMLSL 474 Query: 454 EKARFDKMLSSQEVATLITALGCGI--------GRDEYNPDKLRYHSIIIMTDADVDGSH 505 KA F+K+ ++ V L LGCGI + ++ + L Y II+ TD D D Sbjct: 475 LKADFEKIFKNKVVRELFQYLGCGIEIKSKHNKDLNTFDENNLNYSKIILATDQDTDAFQ 534 Query: 506 IRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGAT 565 IR L+LT YR P +++ G+VYIA+ PLY++ + + +E ++ G Sbjct: 535 IRCLMLTAIYRLAPTLIKHGYVYIAESPLYEITTADKVYHAYTEEEKITILEELSKKGIK 594 Query: 566 LHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQT 625 + GE ++ + M+N R+ + ++++ E L DE Sbjct: 595 -YDKPERNKGLGEVDSDII-----AETMMNPKTRKITRVTVQDVEKMANTFELWLGDE-- 646 Query: 626 VTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGG 685 V + + + + + + L E + + + + Sbjct: 647 ----VKPRKEVITSNFDYIEHFDNEQEKDIVKVLNENYLPYAIEVIKERAIISIDGFKPA 702 Query: 686 EYRRICTLGEK-LRGLLEEDAFIERGERRQPVASFEQALDWLVKESRR 732 + + TL E L + A I V + LV+ +++ Sbjct: 703 HRKLLWTLHESNLYNKRTKSAHIVGSNMSLNVHGDGSIYETLVRMAQK 750 Score = 95.5 bits (236), Expect = 8e-18, Method: Composition-based stats. Identities = 45/182 (24%), Positives = 81/182 (44%), Gaps = 6/182 (3%) Query: 627 TRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGE 686 + V L L + S+ D++T E NL + + T + + + Sbjct: 485 NKVVRELFQYLGCGIEIKSKHNKDLNTFDENNLNYSKIILATDQDTDAFQI-RCLMLTAI 543 Query: 687 YRRICTLGEKLRGLLEEDAF--IERGERRQPVASFEQALDWLVKESRRGLSI---QRYKG 741 YR TL + + E I ++ + E+ + L + S++G+ +R KG Sbjct: 544 YRLAPTLIKHGYVYIAESPLYEITTADKVYHAYTEEEKITILEELSKKGIKYDKPERNKG 603 Query: 742 LGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAAN 801 LGE++ + + ET M+P++R++ RVTV+D F +GD V+PR+ I N + Sbjct: 604 LGEVDSDIIAETMMNPKTRKITRVTVQDVEKMANTFELWLGDEVKPRKEVITSNFDYIEH 663 Query: 802 ID 803 D Sbjct: 664 FD 665 >UniRef50_A7XYG8 GyrB (Fragment) n=6 Tax=Chlamydia trachomatis RepID=A7XYG8_CHLTR Length = 393 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 170/418 (40%), Positives = 240/418 (57%), Gaps = 37/418 (8%) Query: 399 DLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARF 458 D A LPGKL DC E+DP E+Y+VEGDSAGGSAKQGR+R+ QAILP++GKILNVEKAR Sbjct: 1 DSARLPGKLIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARL 60 Query: 459 DKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQM 518 K+ +QE+ ++I ALGCGIG+D +N KLRY IIIMTDADVDGSHIRTLLLTFFYR M Sbjct: 61 QKVFQNQEIGSIIAALGCGIGKDNFNLSKLRYKRIIIMTDADVDGSHIRTLLLTFFYRHM 120 Query: 519 PEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGE 578 ++E VYIAQPPLY+V K K +YI ++ MD Y +++ + + + + L GE Sbjct: 121 SALIENECVYIAQPPLYRVSKKKDFRYILSEKEMDGYLLNLGTKESQIVFDDTLRDLRGE 180 Query: 579 ALEKLVSEYNATQKMINRMERRYP-----KAMLKELIYQPTLTEADLSDEQTVTRWV-NA 632 ALE V+ + I +E++ M ++ Y + + + Sbjct: 181 ALETFVNLILEVESFIVSLEKKAIPFSEFLDMFRDGAYPLYYYPPESGKQGGSYLYSHEE 240 Query: 633 LVSELNDKEQHGSQ----WKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYR 688 + + E+ S+ +K V +++L + +R + + E Sbjct: 241 KEAAIAANEESASRILELYKGSVLEELQRDLGDYGYDIRNYLHPKGSGITV----STEDP 296 Query: 689 RICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPE 748 +I + ++ +D+L R+G+ IQRYKGLGEMN + Sbjct: 297 KISPYV---------------------CYTLKEVIDYLKGLGRKGIEIQRYKGLGEMNAD 335 Query: 749 QLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAA--NIDI 804 QLW+TTM+PE R ++RV++KDA+ AD +FT LMG+ V PRR FI+ +AL N+DI Sbjct: 336 QLWDTTMNPEQRTLVRVSLKDAVEADHIFTMLMGEEVPPRREFIKSHALSIRMNNLDI 393 >UniRef50_C8XUB6 Topoisomerase II large subunit n=1 Tax=Shigella phage phiSboM-AG3 RepID=C8XUB6_9CAUD Length = 637 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 127/631 (20%), Positives = 234/631 (37%), Gaps = 66/631 (10%) Query: 1 MSNSYD-SSSIKVLKGLDAVRKRPGMYIGDT-----------------------DDGTGL 36 MS+ D K L ++ + RP ++G + L Sbjct: 1 MSDKIDIERKYKKLTHVEHILLRPERHLGSIRSSVGTVWVYDPTKDQVIFRDNFEYSPAL 60 Query: 37 HHMVFEVVDNAIDEALAGHCK---EIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEV 93 E++ N +D + K EI VT+ N + D GIP H E+ Sbjct: 61 IKQFDEIITNCVDHSKTPEGKSLTEITVTVSPMNGQIIVADNGGIPVVKHGVTNEWLPEM 120 Query: 94 IMTVLHAGGKFDDNSY----KVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGV 149 + L+AG F+D + SGG +G G S+VN S+ + K + Q++E + Sbjct: 121 LFGSLYAGSNFNDEDEEYNNQKSGGQNGEGASLVNVFSKWFRVATSDGKKSYAQLFEDNM 180 Query: 150 PQAPLAVTGETEKT-GTMVRFWPSLET--FTNVTEFEYEILAKRLRELSFLNSGVSIRLR 206 + V T K GT + + P + + ++ +R E++ N + + L Sbjct: 181 SKKSNPVISNTPKEFGTTIAWIPDYARLGVKGLDQNNLLMIYRRAFEVAACNPRLKVVLN 240 Query: 207 DKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENI 266 K+ + D F + FV+Y + E V VA Sbjct: 241 GKQI-RIDRFGH------FVDYFHAGSAV---------DESGEWSVAVAPS---SGTFMH 281 Query: 267 YCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVK 326 + N+I GG H+ + + KK K + + ++ Sbjct: 282 ASYVNSIATHIGGPHVDYVADQIVAAIRP-----QLVKKFKTELKPAVIKNHMSLFIAAD 336 Query: 327 VPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAAR 386 + +P+F SQTK+++ + + + ++ L LE + + Sbjct: 337 INNPRFDSQTKERMTTPVSQFGTSYKPSDKLIRKALEFVMAGLSKELASLRNEQDDAEFE 396 Query: 387 RAREMTRRKGALDLAGLPGKLADCQER-DPALSELYLVEGDSAGGSAKQGRNRKNQAILP 445 +A++ ++ ++ K R D + L L EGDSA R+ K + P Sbjct: 397 KAKKDISKRDYREIE----KYYPATARGDRSGCSLLLTEGDSASNPILNARDTKKIGLFP 452 Query: 446 LKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSH 505 L+GK +N A K+++++E L T G + + RY ++ TDAD DG H Sbjct: 453 LRGKFINCLNAPRTKVMNNEEFKNLCTIHGGAVPGQPLDIS--RYPQTVVATDADDDGIH 510 Query: 506 IRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQIS-IALDGA 564 IR LL+T + PE V +G + + + P +V GK ++ +++ + A Sbjct: 511 IRGLLITLYCTYWPEYVRQGRLKLLRTPYMRVWCGKVMHEFMNNAEYEEFLKTPDAKKIT 570 Query: 565 TLHTNASAPALAGEALEKLVSEYNATQKMIN 595 + E +++++ +A + Sbjct: 571 KKKYLKGLGGNSTEDFKRILNNLDAYTTTVT 601 >UniRef50_Q6UGM9 DNA gyrase B subunit (Fragment) n=1 Tax=Fusobacterium necrophorum subsp. necrophorum RepID=Q6UGM9_9FUSO Length = 403 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 169/406 (41%), Positives = 235/406 (57%), Gaps = 10/406 (2%) Query: 105 DDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGE---TE 161 ++++YKVSGGLHGVG+SVVNALS+ E+ ++REG ++ Q Y G P + + E Sbjct: 1 ENDNYKVSGGLHGVGISVVNALSEWTEVKVKREGNVYYQKYLRGKPVEDVKIISTLEVGE 60 Query: 162 KTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRD--GKEDHFHYE 219 TGT+V F P +E F FEYE+L RL+EL++LN G+ I L D R+ GK++ F E Sbjct: 61 TTGTIVTFKPDIEIF-ETVIFEYEVLQHRLKELAYLNRGLEINLLDCRNEIGKKESFQSE 119 Query: 220 GGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGG 279 GGI F++ + + + + + + +GV++A + G E IY F NNI G Sbjct: 120 GGISDFLKEVTRENQTLLSKQIHIEGQAEQVGVDIAFTYTTGQSEVIYFFCNNIQYYRGR 179 Query: 280 THLAGFRAAMTRTLNAYMDKEGYS--KKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTK 337 + L ++K G K K++ +E L + K + QTK Sbjct: 180 LSCDWISNLFNKGLLMILEKAGIFEGKGWKITRRRTFGKE-LGLLFRSKFHNRNLEGQTK 238 Query: 338 DKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGA 397 KL +SEV V ++ L +L +NP D K+++ KI+ + +AREAA+RARE RK Sbjct: 239 TKLGNSEVNGIVNTVLSTDLKIFLEDNPNDTKLIIEKILSSKKAREAAQRAREAVLRKSV 298 Query: 398 LDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 457 L++ LPGKLADC + P E++LVEGDSAGGSAKQGR+R QAILPLKGKILNVEKA Sbjct: 299 LEVGSLPGKLADCSSKKPEECEIFLVEGDSAGGSAKQGRDRYFQAILPLKGKILNVEKAG 358 Query: 458 FDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDG 503 K L S E+ ++TA G IG + II+MTDADVDG Sbjct: 359 LHKALESDEIRAMVTAFGTNIGEESLIGKIEI-GKIILMTDADVDG 403 >UniRef50_Q8HFR9 DNA topoisomerase 2 n=1 Tax=Bodo saltans RepID=Q8HFR9_9EUGL Length = 1247 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 141/609 (23%), Positives = 235/609 (38%), Gaps = 72/609 (11%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTDDGT----------------------GLHHMVFEVV 44 + K L +D V RP MY+G + GL + E+V Sbjct: 2 AHKYKKLSPIDHVLLRPEMYVGSVESQPIQLFLLDDQHSKVEWTTADLNHGLLKIFDEIV 61 Query: 45 DNAIDE---ALAGHCKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHA 100 NA D + I VTI ++V++DG GIP + + E+I L Sbjct: 62 LNAADNIHNSKRNPMTFINVTIDETTGQITVENDGAGIPLVKSKDHKLLIPEMIFGHLLT 121 Query: 101 GGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGET 160 +D++ +S G HG G + N +SQ+ + + K + + T Sbjct: 122 SSNYDNDPDSMSAGRHGYGAKLTNIMSQEFIVYCRTADKEVTIRWTDHMRSIDDYQVQPT 181 Query: 161 EKTG--TMVRFWPSLETF--TNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHF 216 + G T + F P F T +T+ Y IL KR+ +L+ V++ D Sbjct: 182 NEAGNLTKITFTPDFSVFGVTKLTKDMYRILHKRILDLAAAFPSVTVSFNGT---ALDVG 238 Query: 217 HYEGGIKAFVEYLNKNKTPIHPNIFYFST-------------EKDGIGVEVALQWNDGFQ 263 + +K F + P P + E + + Q Sbjct: 239 SFASYVKLFEAPASLFSAPTAPVVADGDAAPPPAELNKPFLFEVKHLRLAFIPQPQASVS 298 Query: 264 ENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVV 323 + N + GGTH+ + +T ++A + ++ KK + T + VV Sbjct: 299 RRTFAVVNGVVTYSGGTHVQAAQQILTDAVDALVAQK---KKEGIIVTVNTFLRYFTTVV 355 Query: 324 SVKVPDPKFSSQTKDKLVSS--EVKSAVEQQMNELLAEYLLENPTDAKI-VVGKIIDAAR 380 ++ PKF SQ+K +LVS + Q + L L + + ++ V+ K ++A Sbjct: 356 FLETTQPKFDSQSKVRLVSKVKFPRFPTGQLVEHLATMTFLSDASKGQMDVLNKELNALI 415 Query: 381 AREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSE---LYLVEGDSAGGSAKQGRN 437 RR T KL D + SE L + EGDSA A + Sbjct: 416 QVSGKRRPMISTLT-----------KLVDAASAGGSGSEIRTLIVTEGDSAKALALNSLS 464 Query: 438 ---RKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSII 494 RK + PL+GK+LNV ++ +E+ L ALG IGR + + LRY ++ Sbjct: 465 NEQRKYFGVFPLRGKLLNVRNNNLARLKKCKELCDLFAALGIEIGRRYTSTESLRYQRLL 524 Query: 495 IMTDADVDGSHIRTLLLTFFYRQMPEIVER--GHVYIAQPPLYKV-KKGKQEQYIKDDEA 551 +MTD D DG+HI+ LL++ F P +++ G + I PL + +G + + Sbjct: 525 VMTDQDADGTHIKGLLISAFESLWPSLLQHSLGFISIFSTPLIRATTRGGDVHSFYNVQE 584 Query: 552 MDQYQISIA 560 ++ A Sbjct: 585 FVAWKHDNA 593 >UniRef50_P27570 DNA topoisomerase 2 n=15 Tax=Trypanosomatidae RepID=TOP2_CRIFA Length = 1239 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 137/656 (20%), Positives = 243/656 (37%), Gaps = 91/656 (13%) Query: 6 DSSSIKVLKGLDAVRKRPGMYIGDTDD----------------------GTGLHHMVFEV 43 D+S + L +D V RP MY+G + GL +V E+ Sbjct: 3 DASKYQKLTPIDHVLLRPEMYVGSIETQSIPMFVFDPAKGKMVWESMQVNQGLLKIVDEI 62 Query: 44 VDNAIDEALAG----HCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLH 99 + NA D I + I + V++DG G+P E + E++ L Sbjct: 63 LLNAADNINNSVRGARMTYISIKISDSGEIMVENDGAGLPIVKSKEHKMYIPEMVFGHLL 122 Query: 100 AGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYE---HGVPQAPLAV 156 +++++ + G HG G + N LS K +V + G+ + ++ Sbjct: 123 TSSNYNNDASSTTAGRHGYGAKLTNILSTKFSVVCRTAGREFHMSWTDHMRMATTPRVSN 182 Query: 157 TGETEKTGTMVRFWPSLETFTNVTE----FEYEILAKRLRELSFLNSGVSIRLRDKRDGK 212 EK T V F P F T +L KR+ +L+ + S + +RL + Sbjct: 183 VDPKEKNVTRVTFMPDYAHFGFPTAAISLDMKRVLHKRIMDLAAMFSKIEVRLNNV---- 238 Query: 213 EDHFHYEGGIKAFVEYLNKNKTP-----IHPNIFYFSTEKDGIGVEVALQWNDGFQENIY 267 G + F +Y P + P F + I L + + I Sbjct: 239 ------PFGFQTFNDYARLYSLPGADGAMPPEPFVHTGPNGSIAFVPQLTQS---PKRIV 289 Query: 268 CFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKV 327 N + +GGTH + L++ KK + +V + Sbjct: 290 GVVNGVVTYNGGTHCTSAMEILETGLDSLSRS---LKKDGKVIDTNRVARHFTVLVFLIQ 346 Query: 328 PDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARR 387 PKF SQ+K +LVS+ + + L +YL P ++A + Sbjct: 347 SQPKFDSQSKARLVSTV---TMPRVPRTALDQYLAAMPF---------LEAHMNSMDDQL 394 Query: 388 AREMTRRKGA------LDLAGLPGKLADC---QERDPALSELYLVEGDSAGGSAKQGRNR 438 A E+ + G L KL D + + L + EGDSA A + Sbjct: 395 AAELNKEIGTGKRLSSRSLISSITKLVDATSSRSDGKNIRTLIVTEGDSAKALALNSLSS 454 Query: 439 K---NQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 495 + + PL+GK+LNV ++ + +E+ L ALG +G+ +P +LRY +++ Sbjct: 455 EQKKFCGVFPLRGKLLNVRNKNLKRLKTCKELQDLFLALGLELGKTYKSPAELRYQRLLV 514 Query: 496 MTDADVDGSHIRTLLLTFFYRQMPEIVER--GHVYIAQPPLYKVKKGKQEQYIKDDEAMD 553 MTD D DGSHI+ L++ F P +++ G++ + P+ K+K + + + + Sbjct: 515 MTDQDADGSHIKGLVINAFESLWPSLLQHNPGYISLFSTPIVKIKVNGKAKEVVAFHSFR 574 Query: 554 QYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQ--KMINRMERRYPKAMLK 607 + A+ A K + + + MER + +++ Sbjct: 575 DFHRWQ---------RANPNARYSAKYYKGLGTSTTAEGKEYFADMERNVMRLVVE 621 >UniRef50_A6N697 DNA gyrase subunit B (Fragment) n=2 Tax=uncultured bacterium RepID=A6N697_9BACT Length = 440 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 166/445 (37%), Positives = 241/445 (54%), Gaps = 31/445 (6%) Query: 92 EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGK-IHRQIYEHGVP 150 EVIMTVLHAGGKFD Y SGGLHGVGVSVV AL+ +LE + RE + YE G Sbjct: 1 EVIMTVLHAGGKFDGEVYDYSGGLHGVGVSVVCALASRLEAQVWRETEGSFTIAYEQGKL 60 Query: 151 QAPLAV--TGETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDK 208 PL + GT ++FWP E F + +++ + +R R ++L G+ + + D Sbjct: 61 VQPLRKRPGSKAHPHGTRIKFWPDPEIFGDAV-VDFDAVLERCRSKAYLIPGLRVDVIDH 119 Query: 209 R--DGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTE-----------KDGIG---- 251 R + + G+ + +L N P+H I E DGI Sbjct: 120 RLDPPVKHTYTSRNGLVDLLGHLANN--PLHKPII-IEGEGTYEETVQVLGDDGIRAQNM 176 Query: 252 -----VEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKA 306 +E+AL W G++ N + GGTHL G A++R + + K Sbjct: 177 ERTGRLELALVWTGGYETQFQLAVNQVTTPRGGTHLTGLNQALSRVVVKAAEGSRVKKAK 236 Query: 307 KVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENP- 365 S DD EGL V+ +++P+P+F+ Q K++L + + V Q + LA++ P Sbjct: 237 DPSPNKDDVMEGLCLVMHLQIPEPQFNGQAKEELGTPQAHQLVYQIVARELAKWFETAPR 296 Query: 366 TDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 425 T ++V+ K++ AARAR+AARR+R+M R+K + LP KL+D P SEL +VEG Sbjct: 297 THVRVVLEKVMAAARARDAARRSRDMARKKDRNQVLALPAKLSDSYRHYPEESELLIVEG 356 Query: 426 DSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNP 485 DSA G AK GR+++ QA+LP++GKILN +A + S+ EV + +ALG G +P Sbjct: 357 DSAAGPAKAGRDQRFQAVLPIRGKILNAARASAHNLASNAEVTAIFSALGLQPGPK-CDP 415 Query: 486 DKLRYHSIIIMTDADVDGSHIRTLL 510 ++ RY ++IMTDADVDGSHIRTLL Sbjct: 416 EQRRYTRVVIMTDADVDGSHIRTLL 440 >UniRef50_D0NA12 DNA topoisomerase 2 n=1 Tax=Phytophthora infestans T30-4 RepID=D0NA12_PHYIN Length = 1505 Score = 384 bits (986), Expect = e-105, Method: Composition-based stats. Identities = 126/641 (19%), Positives = 232/641 (36%), Gaps = 125/641 (19%) Query: 10 IKVLKGLDAVRKRPGMYIGDTDDG----------------------TGLHHMVFEVVDNA 47 + L+ + RP Y+G + GL+ + E++ NA Sbjct: 102 YQKKTQLEHILLRPDTYVGSIEHVEQSMWVFDDEKQRMVLKKINYVPGLYKIFDEIIVNA 161 Query: 48 IDEALAG-HCKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFD 105 D + VTI + N +SV ++G+GIP +H E V E+I L G FD Sbjct: 162 CDNKQRDKSMNTLKVTIDVEKNEISVWNNGKGIPIVLHKEHKVYVPELIFGHLLTGSNFD 221 Query: 106 DNSYKVSGGLHGVGVSVVNALSQKL--ELVIQREGKIHRQIYEHGVPQA-PLAVTGETEK 162 D K +GG +G G + N S + E + ++Q++E + + P ++T +K Sbjct: 222 DKKKKTTGGRNGYGAKLANIFSNEFVVETADSSTKQKYKQVFESNMSKKNPPSITKWAQK 281 Query: 163 TGTMVRFWPSLETFT--NVTEFEYEILAKRLRELSFLN-SGVSIRLRDKRDGKEDHFHYE 219 T + F P LE F + + + KR+ +++ ++ G+++ L + + Y Sbjct: 282 DFTCISFKPDLERFKLDFLNDDIVSLFKKRVYDVAGVSGKGMNVFLNGDKIPIKSFPQYV 341 Query: 220 G---GIKAFVEYLNKNKTPIHPNI-------------------------------FYFST 245 G + + +K+ HP+ F Sbjct: 342 ALYPGPRGYEADKDKDDEDAHPDENGDDDDEDYSEDKAKKAKAARAKPSNVTKNGVIFEK 401 Query: 246 EKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 305 + V V + DGFQ+ H++ +T L + + K+ + Sbjct: 402 PDERWQVGVGMS-EDGFQQ----------------HVSYIVDQITAKLVSVLKKKNKGEA 444 Query: 306 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENP 365 K + + + VS + +P F SQTK+ L + +++ + L ++ Sbjct: 445 VKPNY----IKNHMFVYVSALIDNPAFDSQTKETLTTRANSFGSTFNLSDKFLKQLEKSG 500 Query: 366 TDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQ---ERDPALSELYL 422 +V KI+ A ++ A R+ L G+P KL D L L Sbjct: 501 -----LVEKILSFAAFKQTAELRRKGGSSGKRSRLTGIP-KLDDANHAGTAKSKDCTLIL 554 Query: 423 VEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDE 482 EGDSA +L ++E+ ++ LG G+ Sbjct: 555 TEGDSA------------------------------KTILKNEEIQNVVKILGLKYGQKY 584 Query: 483 YNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIV-ERGHVYIAQPPLYKVKKGK 541 + LRY ++IM D D DGSHI+ L++ + P ++ G + P+ K KG+ Sbjct: 585 ESTKGLRYGHLMIMADQDHDGSHIKGLVINLIHHFWPSLLVVDGFLQEFITPIVKCTKGR 644 Query: 542 QEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEK 582 ++ + ++ + + A K Sbjct: 645 TKEVFYTMPEYEAWRERTNQGRGWVIKYYKGLGTSTAAETK 685 >UniRef50_C9S837 DNA topoisomerase 2 n=2 Tax=Sordariomycetes RepID=C9S837_VERA1 Length = 1688 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 111/604 (18%), Positives = 218/604 (36%), Gaps = 119/604 (19%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTD----------------------DGTGLHHMVFEVV 44 + + L L+ + KRP YIG + GL+ + E++ Sbjct: 123 EETYQKLTQLEHIVKRPDTYIGSVERTEMPMWVYNKETQLMEFRKVTTVPGLYKIFDEIL 182 Query: 45 DNAID------EALAGHCKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTV 97 NA D E+ I V I + +S+++ Sbjct: 183 VNAADIKVRREESGEEPVTHIKVNIDREAGQISIEN------------------------ 218 Query: 98 LHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQ-APLAV 156 +G G+ + + ++ I+ + + + + Sbjct: 219 ------------------NGKGIP----------VEMHKQHGIY--TWTDNMSKMGKAKI 248 Query: 157 TGETEKTGTMVRFWPSLETFT--NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKED 214 T + F P + F+ + + +L +R+ +++ G+ + L Sbjct: 249 TSSKSSDFVRITFKPDFKRFSMEGIDDDLEALLYRRVYDMAGTIKGIKVHLNGT---VVK 305 Query: 215 HFHYEGGIKAFVEYLNKNKTPIH---PNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTN 271 ++G + + + + K + P + + D +V +DG ++I F N Sbjct: 306 PSAFKGYSEMYAKAIAKERASEEGGEPKVTVEMDKNDNPRWDVGFTVSDGSFQHI-SFVN 364 Query: 272 NIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPK 331 NI GGTH+ + + L Y+DK KK + R + ++ ++ +P Sbjct: 365 NIATTSGGTHVNYVADQIVQYLTKYLDK----KKKGHALKPQHIRNHIFVFINCRIENPS 420 Query: 332 FSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREM 391 F+SQTK+++ + + ++E + K+ I + + + M Sbjct: 421 FNSQTKEQMTTKISSFGSKCVLSEAFLK---------KVAASDAIQNIMSFAEKKADKMM 471 Query: 392 TRRKGALDLAGLPGKLADCQ---ERDPALSELYLVEGDSAGGSAKQGR---NRKNQAILP 445 + G KL D + L L EGDSA A GR + + P Sbjct: 472 AKSDGNRRSRINNAKLVDANLAGTKRGHECTLILTEGDSAKSLAVAGRAILDPDRIGVFP 531 Query: 446 LKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSH 505 L+GK+LNV A +++ +QE+ + LG ++ + LRY ++IM D D DGSH Sbjct: 532 LRGKMLNVRDASIEQITKNQEIQNIKQFLGLKHKQNYTDTKGLRYGHLMIMADQDHDGSH 591 Query: 506 IRTLLLTFFYRQMPEIVERG-HVYIAQPPLYKVKKGKQEQY------IKDDEAMDQYQIS 558 I+ LL+ F Q P +++ P+ KV +GK + ++++ + Sbjct: 592 IKGLLINFLQVQYPSLLQIPDFFREFITPIVKVWQGKNPKNPQKLQAFFTQPQYEEWKEA 651 Query: 559 IALD 562 + Sbjct: 652 HKNE 655 >UniRef50_C6LX36 DNA topoisomerase 2 n=3 Tax=Giardia intestinalis RepID=C6LX36_GIALA Length = 1492 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 130/657 (19%), Positives = 227/657 (34%), Gaps = 116/657 (17%) Query: 8 SSIKVLKGLDAVRKRPGMYIGDTDDG---------------------TGLHHMVFEVVDN 46 + I+ + G + V RP MY+G GL + E++ N Sbjct: 5 TKIQRVTGSEHVLLRPDMYVGSVSSAETFLWLYNPDQGLYYTKANIVPGLCKIFDEIIVN 64 Query: 47 AIDEALAGH-------CKEIIVTIHA-DNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVL 98 A D I + ++SV++DG +E + + +L Sbjct: 65 ASDNKQRDSDRSAGHKMSYIKCDVDVVSGAISVENDGVEGLLHFDEKEKMYLPTLAFGIL 124 Query: 99 HAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAP---LA 155 +DD +V+GG +G G + N S K +++Q G++ Q + + + Sbjct: 125 MTSSNYDDTEQRVTGGRNGYGAKLTNIFSTKFTVLLQENGRVFEQTWTDNMKNTQSPRIE 184 Query: 156 VTGETEKTGTMVRFWPSLETFTNVTEFEYE---ILAKRLRELSFLNSGVSIRLRDKRDGK 212 + +K F P F + + + + +R +++ N G+ + + + Sbjct: 185 DVKDKKKNFIRFSFTPDYMKFGMTSGLDRDHAAYMMRRAVDVAGCNIGLKLIINGEELKI 244 Query: 213 EDHFHYEGG--------IKAFVEY------------------------------------ 228 + Y I F E Sbjct: 245 ANFEQYARMVYRSINPEITQFYEASRGDAAQVGANDSDSEPDLKSAATKAKPKAKRTKKA 304 Query: 229 ---------LNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGG 279 +++ P Y ++ L + D + F N+I DGG Sbjct: 305 VETNSLLVPIDELSKPSDWTSDYLKVISVNKFWDIGLGYTDSGELVQVSFVNSINTTDGG 364 Query: 280 THLAGFRAAMTRTLNAYMDKE-GYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKD 338 TH+ + LN + K K T + L+ + V +P F SQTK Sbjct: 365 THVDAILDLIMSQLNDILIKSFQQDAKNAKKLTRQQLKSCLVLFIRSLVVNPSFDSQTKI 424 Query: 339 KLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRA------REMT 392 L + + + L E A +V +I D A R+A + +T Sbjct: 425 SLKT------DKAALLRSLGSTQAELTNLATQLVKRIQDVRPLWNALRQASYNQAAKLLT 478 Query: 393 RRKGAL--DLAGLPGKLADC---QERDPALSELYLVEGDSAGGSAKQGRN-----RKNQA 442 + G+ L G+P KL D R+ + L L EGDSA A G + +K Sbjct: 479 KTDGSKTSQLLGIP-KLDDAIAAGTRESSKCTLILTEGDSAKALAVDGISSIEDGKKYYG 537 Query: 443 ILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDE---YNPDKLRYHSIIIMTDA 499 + PL+GK++NV DK+ ++ E+ L LG G D + LRY ++IMTD Sbjct: 538 VFPLRGKVINVRNESIDKVSNNAEITNLKKILGLKQGMDYSTQEARNTLRYGHVMIMTDQ 597 Query: 500 DVDGSHIRTLLLTFFYRQMPEIVE-RGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQY 555 D DGSHI+ LL+ F + + P+ + + + + ++ Sbjct: 598 DPDGSHIKGLLINLFDTYWNGLARSNKFLDFFITPIVRCTQARNMKTFYTIPEYKKW 654 >UniRef50_C9DGI8 Gp60plus39 DNA topoisomerase subunit n=1 Tax=Deftia phage phiW-14 RepID=C9DGI8_9CAUD Length = 648 Score = 374 bits (961), Expect = e-102, Method: Composition-based stats. Identities = 132/620 (21%), Positives = 251/620 (40%), Gaps = 73/620 (11%) Query: 6 DSSSIKVLKGLDAVRKRPGMYIGDTDD----------------------GTGLHHMVFEV 43 D S K+L D +R RPG Y+GD + + E+ Sbjct: 24 DVSKYKMLSERDHIRIRPGRYLGDINTSLVKDSWTVNEQGQVERRDVQQNPAFTKLFDEI 83 Query: 44 VDNAID---EALAGHCKEIIVTIHAD-NSVSVQDDGRGIPTGIH------PEEGVSAAEV 93 + N+ D A H I V + +SV D+G GIP + ++ Sbjct: 84 ITNSADFSLTADGKHLNIIRVDYSREHGCISVYDNG-GIPVVETIVDREGQPTKLWIPDM 142 Query: 94 IMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGV--PQ 151 I L +G F+D + S G +G G ++VN S + ++ Y G+ Sbjct: 143 IFGFLRSGSNFNDEADSESAGQNGEGSTLVNVFSSRFDVETCDGKNKFSITYLDGMANKT 202 Query: 152 APLAVTGETEKTGTMVRFWPSLETFTNV--TEFEYEILAKRLRELSFLNSGVSIRLRDKR 209 AP V + T + ++P ++ + L +R E++ N+ + + Sbjct: 203 APEVVAAQGATPFTRITYFPEWSIMGMTGQEDWIEDTLRRRCLEVAACNTHIRV------ 256 Query: 210 DGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWN-DGFQENIYC 268 Y G V+ + P S K +VAL + +GF+ Y Sbjct: 257 --------YYNGKPVNVKKFGDFAAMLDPVCVSESAPK----WDVALSLSKNGFKH--YS 302 Query: 269 FTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVP 328 + N+ GGTH+ + + A+++ K K + V+ ++ Sbjct: 303 YVNSTLTFVGGTHINHVMDKIVAEVRAHIES-----KTKQDIKPAEILNQFQLTVAARIN 357 Query: 329 DPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRA 388 +P++SSQTK+ L++ V+ ++ + ++++P ++ K+++ A R+A + Sbjct: 358 NPRYSSQTKENLITPVSSYNVKYSPSKEFIKAIIDSP-----MMKKLLEWAERRKAVQDI 412 Query: 389 REMTRRKGALDLAGLP--GKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPL 446 +E + A K ++ A + L++ EGDSA Q + + + PL Sbjct: 413 KEAEKEIQDARKASFHHIPKYRPATNKNKAENILFVAEGDSALKP-LQAAKKPHHGLFPL 471 Query: 447 KGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHI 506 +GK NV + +E LI LG + + +N D +RY ++++ TDAD+DG+HI Sbjct: 472 RGKPDNVFDKTIRHLAKQKEFQDLIQILGLDLHQ--FNSDTIRYSALVVATDADLDGAHI 529 Query: 507 RTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATL 566 R LL F+R +++ G + P+ VK+GK+ ++ + ++ + T Sbjct: 530 RGLLTVAFWRFWRPLIDEGFLRFLVTPIITVKQGKETIEFFTEQEYEDWRAANPTAKYTR 589 Query: 567 HTNASAPALAGEALEKLVSE 586 + A E +E+ +++ Sbjct: 590 KYYKGLGSWATEDMERFMND 609 >UniRef50_B9U3G6 DNA topoisomerase 2 (Fragment) n=1 Tax=Pleurotus djamor RepID=B9U3G6_PLEDJ Length = 735 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 109/514 (21%), Positives = 192/514 (37%), Gaps = 54/514 (10%) Query: 115 LHGVGVSVVNALSQKL--ELVIQREGKIHRQIYEHGVPQAPLAVTGETEK--TGTMVRFW 170 +G G + N S + E + K + Q + + Q A + + T V F Sbjct: 1 RNGFGAKLANIYSHEFTIETADKTNEKKYSQTWTKNMTQVGKAKITKNGRGEEWTKVTFK 60 Query: 171 PSLET--FTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHY-EGGIKAFVE 227 P L T++ +L KR+ +++ V + L D+R ++ Y E + + Sbjct: 61 PDLARFGMTHIDPDTAGLLRKRVYDMAGTVKDVKVYLNDERLKVKNFKQYVEMYLDSAAA 120 Query: 228 YLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRA 287 +N E+ EV +DG F N+I GGTH+ Sbjct: 121 DAKENSGGAAQAKASIIYEQISPRWEVGFATSDG-TFQQVSFANSISTIKGGTHVNYISD 179 Query: 288 AMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKS 347 + + L A + K+ + + + V+ + +P F SQTK+ L K Sbjct: 180 QLAKNLIAAITKKNK----GAAVKPAQIKNHMWIFVNALIENPTFDSQTKETLTLPASKF 235 Query: 348 AVEQQMNELLAEY-----LLENPTDAKIVVGK--IIDAARAREAARRAREMTRRKGALDL 400 ++E + +L + +++V K IID + +++ + G+ Sbjct: 236 GSRPTLSEEFMKKGCVPIVLVVLSSYRLLVQKSSIIDQVLNWAKFKADQQIKKTDGSKRT 295 Query: 401 AGLPG----------------KLADCQ---ERDPALSELYLVEGDSAGGSAKQGR---NR 438 KL+D + L L EGDSA A G R Sbjct: 296 RYFHSHSTEFVLNSIIVTGMAKLSDANNAGTKHAEKCTLILTEGDSAKSLAVAGLAVVGR 355 Query: 439 KNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTD 498 N + PL+GK+LNV +AR D+++ ++E+ + +G ++ N LRY ++IMTD Sbjct: 356 DNFGVFPLRGKLLNVREARHDQVMKNEEIQNIKKIMGLQHNKEYSNVSSLRYGRLMIMTD 415 Query: 499 ADVDGSHIRTLLLTFFYRQMPEIVERG-HVYIAQPPLYK------------VKKGKQEQY 545 D DGSHI+ LL+ F P +++ + P+ + V KG Q + Sbjct: 416 QDHDGSHIKGLLINFLDHFYPSLLKIPEFLVEFVTPIVRVSIFHQCQIPPHVTKGSQRKN 475 Query: 546 IKDDEAMDQYQISIALDGATLHTNASAPALAGEA 579 +Q+ S + +A Sbjct: 476 FFTIPEYEQWIESTPDSKKWTAKYYKGLGTSSDA 509 >UniRef50_D2RAT5 DNA gyrase, B subunit, C-terminal domain protein n=10 Tax=Bifidobacteriaceae RepID=D2RAT5_GARVA Length = 792 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 145/463 (31%), Positives = 241/463 (52%), Gaps = 42/463 (9%) Query: 195 SFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---- 250 S N+ + +++K + F + GG+K FV++L+K + +I+ S E + Sbjct: 316 SVANAQSANSMQNKHHPRVVEFLHNGGVKDFVDFLSKGEAV--SDIWRISGEDTYVEETQ 373 Query: 251 -----------------GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTL 293 GV++A++W +G+ I F N + GG H+ GF +T+ + Sbjct: 374 AVDSAGDLHAQQVTRKCGVDIAMRWVNGYDSTIISFVNVVETPGGGMHVDGFLQGLTKQI 433 Query: 294 NAYMDKEG-----YSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSA 348 ++ K + DD GL+AVV+V++ +P+F QTKD L +++VK Sbjct: 434 RKAVEDNARKLKVNLKDSNTKIERDDITAGLVAVVTVRIAEPQFQGQTKDVLGTAQVKPI 493 Query: 349 VEQQMNELLAEYLLENPTDAKIV----VGKIIDAARAREAARRAREMTRRKGALDLAGLP 404 V + + E + + K + KI+ AR AR+ +E+TRRK AL+ A +P Sbjct: 494 VTKMTDAQFGEMITGSKRGFKEQSSRVLEKIVSEMHARIQARKTKEVTRRKNALESASMP 553 Query: 405 GKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 464 KL+DCQ + ++EL++VEGDSA G+AK RN QA+LP++GKILNV+KA +MLS+ Sbjct: 554 PKLSDCQPGNDDVAELFIVEGDSALGTAKAARNSAFQALLPIRGKILNVQKASLAQMLSN 613 Query: 465 QEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVER 524 +E A +I +G G G ++ + RY+ I++MTDADVDG+HIR LLLT FYR M ++E Sbjct: 614 KECAAIIQVVGAGSGA-SFDISQARYNKIVMMTDADVDGAHIRILLLTLFYRYMRPLIEH 672 Query: 525 GHVYIAQPPLYKV----KKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEAL 580 GHVY A PPL+++ K+ + Y D+ + + G +++ GE Sbjct: 673 GHVYAAVPPLHRIALAGKRKGEYIYTYSDDELAGKLDDLQAKGIDFNSDIQRYKGLGEMD 732 Query: 581 EKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDE 623 +++ + RM RR +++ + + + D+ Sbjct: 733 ADQLADTTMDPR--TRMLRRIR---MEDAQQASEVFDLLMGDD 770 Score = 251 bits (642), Expect = 7e-65, Method: Composition-based stats. Identities = 108/264 (40%), Positives = 148/264 (56%), Gaps = 35/264 (13%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 YD+ S+ VL+GLDAVRKRPGMYIG TD GL H ++E++DNA+DEALAG C IIV Sbjct: 5 KEQYDADSLTVLEGLDAVRKRPGMYIGTTD-SQGLMHCLWEIIDNAVDEALAGACDHIIV 63 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 T+H D S+ V D+GRGIP + P+ ++ EV++T LHAG KF + SY +GGLHGVG S Sbjct: 64 TLHDDGSIEVADNGRGIPVDVEPKTKLTGVEVVLTKLHAGAKFGNASYNAAGGLHGVGSS 123 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVP------------------------QAPLAVT 157 VVNALS +L++ + R+GK H + G P L + Sbjct: 124 VVNALSLRLDVEVDRDGKTHHMAFHQGHPGVYSDADPEHPSPASPFKRTRKNKSTELEII 183 Query: 158 GE--TEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDH 215 G + TGT VR+W E F + F YE L R+R+ SFL G+ I + D+ + Sbjct: 184 GTVSPKTTGTRVRYWADPEIFNSTAHFSYEQLIARVRQTSFLVPGLKITVIDEHVPE--- 240 Query: 216 FHYEGGIKAFVEYLNKNKTPIHPN 239 G A +E ++ K + + Sbjct: 241 -----GESANIEEIDSTKDDVAED 259 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 38/95 (40%), Positives = 55/95 (57%), Gaps = 4/95 (4%) Query: 708 ERGERRQPVASFEQALDWLVKESRRGLS----IQRYKGLGEMNPEQLWETTMDPESRRML 763 +R S ++ L +G+ IQRYKGLGEM+ +QL +TTMDP +R + Sbjct: 690 KRKGEYIYTYSDDELAGKLDDLQAKGIDFNSDIQRYKGLGEMDADQLADTTMDPRTRMLR 749 Query: 764 RVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALK 798 R+ ++DA A ++F LMGD V PR+ FI +NA Sbjct: 750 RIRMEDAQQASEVFDLLMGDDVPPRKQFIVDNADD 784 >UniRef50_UPI0001976865 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Bacillus subtilis subsp. subtilis str. NCIB 3610 RepID=UPI0001976865 Length = 638 Score = 366 bits (940), Expect = 2e-99, Method: Composition-based stats. Identities = 165/623 (26%), Positives = 277/623 (44%), Gaps = 36/623 (5%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 M+ + + IK L + R++ ++ G D+ +H + E++ N DE + E I Sbjct: 1 MTTT-NQDKIKRLDDREKSREKIAIWYGSADN---YYHGLKEILANGTDEVINNF-DEGI 55 Query: 61 VTI---HADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHG 117 VT+ +V V D GRGIP +GV E++ L A K++ S + + G +G Sbjct: 56 VTLELFDDLQTVRVTDTGRGIPID-GETDGVKNYELLFRTLFASTKYET-SEQTTTGTNG 113 Query: 118 VGVSVVNALSQKLELVIQREGKIHRQIYEHG--VPQAPLAVTGETEKTGTMVRFWPSLET 175 VG +V+N S + +G H +E+G + Q ++ GT++ F E Sbjct: 114 VGATVLNFTSLFFHIESYYDGYKHALKFENGGELVQDLTKEKISEDRHGTVITFKLDPEV 173 Query: 176 FTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTP 235 + VT ++ +++ + +R + I+L +G+E+ FHYE + F E + T Sbjct: 174 YPVVT-YDKDVVREIVRRFA--IGSHKIKLIFIHNGEEETFHYESVEEYFEELIGSTTTS 230 Query: 236 IHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNA 295 E+DG ++ L ++ + N DGG+ G + N Sbjct: 231 PVITAPESLYEEDGERTQIKLTFSTTTDPIQESYLNLTYLSDGGSFNDGVITGIKTFCNK 290 Query: 296 YMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNE 355 Y + K S T +D + V+ +F +QTK + ++ + Sbjct: 291 YARENKLFPKGINSFTTEDIESSVSFVLVALSNKVEFKNQTKLSTDKKLYRKLAQRHTTQ 350 Query: 356 LLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGK---LADCQE 412 LL + +EN K V +++ + +++A++ ++K + + G+ K L DC + Sbjct: 351 LLEVFQIENEKGFKKFVNHLLEVQKHNTQSQKAKQQLKKKLSEKVDGIGNKVANLVDC-K 409 Query: 413 RDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 472 + SE+++ EG SA GS R+ QA PL+GKILN KA + + +Q + LI Sbjct: 410 KHGKDSEIFIAEGQSALGSIVLARDAVYQAAYPLRGKILNCLKADYTTIFKNQIITDLIK 469 Query: 473 ALGCGI-------GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERG 525 LGCGI D +N + LRY III TD D DG+ I L++T YR MP+++E G Sbjct: 470 VLGCGIQTDKKNKDLDTFNINNLRYGKIIIATDQDSDGAQIACLIITMIYRLMPKLIEEG 529 Query: 526 HVYIAQPPLYKVK-KGKQEQYIKDDEAMDQ--------YQISIALDGATLHTNASAPALA 576 +VYIAQ PLY++K + Y + DQ Y I+ L A Sbjct: 530 YVYIAQTPLYEIKLEDDSMIYFYSESEKDQKINTLKGKYTIARCKGLGELDAVTMAETAM 589 Query: 577 GEALEKLVS-EYNATQKMINRME 598 E L+ + MI +E Sbjct: 590 NEETRNLIKVTVEDAENMIESLE 612 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 2/121 (1%) Query: 681 FITGGEYRRICTLGEKLRGLLEEDAF--IERGERRQPVASFEQALDWLVKESRRGLSIQR 738 I YR + L E+ + + I+ + E D + + +I R Sbjct: 513 LIITMIYRLMPKLIEEGYVYIAQTPLYEIKLEDDSMIYFYSESEKDQKINTLKGKYTIAR 572 Query: 739 YKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALK 798 KGLGE++ + ET M+ E+R +++VTV+DA + T MG +V+ RR +I EN K Sbjct: 573 CKGLGELDAVTMAETAMNEETRNLIKVTVEDAENMIESLETWMGSSVDNRREYISENLYK 632 Query: 799 A 799 Sbjct: 633 Y 633 >UniRef50_B6EUG7 DNA gyrase subunit B (Fragment) n=6 Tax=Actinomycetales RepID=B6EUG7_RHOER Length = 446 Score = 365 bits (937), Expect = 4e-99, Method: Composition-based stats. Identities = 148/288 (51%), Positives = 205/288 (71%), Gaps = 1/288 (0%) Query: 208 KRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIY 267 K+ K+ +HY G+ +V+YLNK+K+ IHP I F + D VE+A+QWN G++E+++ Sbjct: 160 KKLEKKVSYHYPDGLIDYVKYLNKSKSEIHPTIVGFEAKGDDHEVEIAMQWNSGYKESVH 219 Query: 268 CFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKV 327 F N I +GGTH GFRAA+T +N Y + K+ + TGDD REGL AVVS +V Sbjct: 220 TFANTINTHEGGTHEEGFRAALTTLMNRYAREHKLLKEKDPNLTGDDCREGLAAVVSARV 279 Query: 328 PDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARR 387 DP+F QTK KL ++E+K V++ +NE LA + NP +AK +V K + ++ AR AAR+ Sbjct: 280 GDPQFEGQTKTKLGNTELKGFVQRAVNEHLAFWFDANPAEAKAIVNKAVASSHARVAARK 339 Query: 388 AREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLK 447 AR++ RRK A D+ GLPGKLADC+ +DP +EL++VEGDSAGGSAKQGR+ QAILPL+ Sbjct: 340 ARDLVRRKSATDMGGLPGKLADCRTKDPNAAELFIVEGDSAGGSAKQGRDSMYQAILPLR 399 Query: 448 GKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 495 GKILNVEKAR D++L + EV +ITALG GI +E++ +KLRYH I++ Sbjct: 400 GKILNVEKARLDRVLKNAEVQAIITALGTGIN-EEFDIEKLRYHKIVL 446 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 49/101 (48%), Positives = 69/101 (68%), Gaps = 2/101 (1%) Query: 109 YKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVR 168 Y VSGGLHGVG+SVVNALS ++E I+R GK Q + VP L TGT +R Sbjct: 1 YAVSGGLHGVGISVVNALSTRVEADIKRAGKHWIQNFNMAVPD-ELVEGSNARGTGTAIR 59 Query: 169 FWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKR 209 FWP E F TEF+++++++RL+E++FLN G++I L+D+R Sbjct: 60 FWPDPEIF-ETTEFDFDVISRRLQEMAFLNKGLTITLKDER 99 >UniRef50_P34534 Putative DNA topoisomerase 2, mitochondrial n=5 Tax=Caenorhabditis RepID=TOP2M_CAEEL Length = 1054 Score = 365 bits (937), Expect = 4e-99, Method: Composition-based stats. Identities = 118/514 (22%), Positives = 208/514 (40%), Gaps = 54/514 (10%) Query: 69 VSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQ 128 +SV ++G G+P IHP EG+ ++ L +DD+ K GG +G G + N S+ Sbjct: 15 ISVWNNGSGLPVEIHPTEGIYVPTLVFGNLFTSSNYDDSEIKTVGGRNGYGAKLCNIFSK 74 Query: 129 KL--ELVIQREGKIHRQIYEHGVPQAP----LAVTGETEKTGTMVRFWPSLETF--TNVT 180 + E V R + RQ + + + + + ET K T V F P LE F ++ Sbjct: 75 EFIVETVDTRIKRRFRQKWYDNMKKCNEAEVVEILDETVKDYTKVEFVPDLERFQIDKLS 134 Query: 181 EFEYEILAKRLRELSF-LNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPN 239 + +++ +R+ E++ L V + L ++ G + +V+ N + + + Sbjct: 135 DDVIDLIGRRVFEVAATLPRDVDVYLNGQKCDV-------DGFEDYVKMFNDSSSLL--- 184 Query: 240 IFYFSTEKDGIGVEVALQWNDGFQEN------IYCFTNNIPQRDGGTHLAGFRAAMTRTL 293 F V VA + N+ F E+ I F NNI GG+H+ + + Sbjct: 185 ---FLHPTPRWHVGVAKR-NNFFGESHVVLPKIVSFVNNINTEKGGSHVDYVMDKIVNII 240 Query: 294 NAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQM 353 +D + S + L ++ + +P F SQTK+ L + Sbjct: 241 KPIVDSK--LGDPTKSVKPAVIKNNLSIFINCLIENPSFESQTKETLTTKA--------- 289 Query: 354 NELLAEYLLENPTDAKIVVGK---IIDAARAREAARRAREMTRRKGALDLAGLPGKLADC 410 + + + I D ++ + +R + + KL D Sbjct: 290 -KNFGSIFECDAKKTAEWAEQSGLIEDIVEEVLNMKKKKLPGKRVSVSSVRDIV-KLEDA 347 Query: 411 QERD----PALSELYLVEGDSAGGSAKQG---RNRKNQAILPLKGKILNVEKARFDKMLS 463 + L L EGDSA A G R+ + PLKGK+LNV + Sbjct: 348 EWAGITGTAEKCTLILTEGDSAKALALAGLEVLGRETYGVFPLKGKLLNVSNLDDARASK 407 Query: 464 SQEVATLITALGCGI-GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIV 522 ++E++ L+ LG + + LRY ++I+ D D DGSHI+ L++ F ++ P +V Sbjct: 408 NEEISNLLRILGLKFEDSNSITRESLRYGRLLILADQDEDGSHIKGLIVNFIHKFWPSLV 467 Query: 523 E-RGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQY 555 G + + PL K KKG + + ++ Sbjct: 468 HTDGFIQSFRTPLLKAKKGDKVRSFFSMNEYRKW 501 >UniRef50_C0DAN0 Putative uncharacterized protein (Fragment) n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DAN0_9CLOT Length = 422 Score = 362 bits (928), Expect = 5e-98, Method: Composition-based stats. Identities = 153/407 (37%), Positives = 219/407 (53%), Gaps = 79/407 (19%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 + N Y + I++L+GL+AVRKRP MYIG+T GLHH+V E+VDNA+DEALAGHC + Sbjct: 18 VKNEYRAEQIQILEGLEAVRKRPAMYIGNTSSA-GLHHLVCEIVDNAVDEALAGHCSAVS 76 Query: 61 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 VT++ D SV++ D+GRGIP GI + G+SA +V+ TVLHAGGKFD ++YKVSGGLHGVG Sbjct: 77 VTLNRDGSVTITDNGRGIPVGIQKKTGLSALQVVFTVLHAGGKFDSSNYKVSGGLHGVGA 136 Query: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQA---------------------PLAVTGE 159 SVVNALS L + ++R+G +Q Y GVP P+ +T + Sbjct: 137 SVVNALSLWLRVEVRRDGGTWKQSYSRGVPDGAVTKEEAVRGCATGPLARQDDPIPLTRQ 196 Query: 160 TEK-----------------------TGTMVRFWPSLETFTNVTEFEYEILAKRLRELSF 196 + +GT V F P E F + F+YE+L KR+RE +F Sbjct: 197 DDPVPSARNEAPFSPARQGALDTVSVSGTTVTFLPDPEIFRDPV-FQYEVLKKRMRETAF 255 Query: 197 LNSGVSIRLRDKR---------------------------------DGKEDHFHYEGGIK 223 L G+S+ L D R ++DHF E G++ Sbjct: 256 LTKGLSLTLTDLRADCKHGSNTAATPDATTADAPKSPESSNLPQPTLPRQDHFLCEKGLE 315 Query: 224 AFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLA 283 FV +LN++ +P++ I + I VE A+Q G+ + +Y F NNI +GG+H+ Sbjct: 316 DFVNWLNRDASPLYSEIICGGADSGDIQVEFAIQHTAGYDQRLYSFVNNISTPEGGSHVT 375 Query: 284 GFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDP 330 GF +A+ R LN K++ ++ EGL AV+SV++ DP Sbjct: 376 GFHSALVRALNHCARNLKLLKESAPPLCREELTEGLTAVISVRMQDP 422 >UniRef50_D2QB32 GyrB2 DNA gyrase subunit B n=8 Tax=Bifidobacterium RepID=D2QB32_9BIFI Length = 778 Score = 361 bits (927), Expect = 5e-98, Method: Composition-based stats. Identities = 138/448 (30%), Positives = 229/448 (51%), Gaps = 42/448 (9%) Query: 210 DGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKD--------------------- 248 + + F + GG+K FV++L+K + +I+ + + Sbjct: 317 HARVEEFCHNGGVKDFVDFLSKGEAV--SDIWRITGDDTYVEETQAVGEGGELHAQKVTR 374 Query: 249 GIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEG-----YS 303 V++A++W DG+ + F N + GG H+ GF +T+ + ++ Sbjct: 375 DCAVDIAMRWTDGYDTTMRSFVNVVETPGGGMHVDGFLQGITKQIRKAVEDNARKLKVNL 434 Query: 304 KKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLE 363 K + + DD GL+AVV+V++ +P+F QTKD L +++VK V + + E + Sbjct: 435 KDSNMKVERDDIMAGLVAVVTVRIAEPQFQGQTKDVLGTAQVKPIVTRMTDRQFGEMITG 494 Query: 364 NPTDAKIV----VGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSE 419 + K + KI+ AR AR+ +E+TRRK AL+ A +P KL+DCQ + ++E Sbjct: 495 SKRGYKEQSGRVLEKIVGEMHARIQARKTKEVTRRKNALESASMPPKLSDCQPGNDDVAE 554 Query: 420 LYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIG 479 L++VEGDSA G+AK RN QA+LP++GKILNV+KA +MLS++E A +I +G G G Sbjct: 555 LFIVEGDSALGTAKAARNSGFQALLPIRGKILNVQKASLAQMLSNKECAAIIQVVGAGSG 614 Query: 480 RDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKV-- 537 ++ ++ RY+ II+MTDADVDG+HIR LLLT FYR M ++E GHVY A PPL+++ Sbjct: 615 A-SFDIEQARYNKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGHVYAAVPPLHRIAL 673 Query: 538 --KKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMIN 595 + Y D+ + + + + GE +++ + Sbjct: 674 TGAHKGEYIYTYSDDELAGKLSELERKHIAYNDDIQRYKGLGEMDADQLADTTMDPR--T 731 Query: 596 RMERRYPKAMLKELIYQPTLTEADLSDE 623 RM RR +++ + + D+ Sbjct: 732 RMLRRIR---MEDAEQANEIFSLLMGDD 756 Score = 255 bits (651), Expect = 5e-66, Method: Composition-based stats. Identities = 103/237 (43%), Positives = 144/237 (60%), Gaps = 27/237 (11%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 ++Y + S+ VL+GLDAVRKRPGMYIG TD GL H ++E++DN++DEALAG C I+V Sbjct: 3 KDNYGAGSLTVLEGLDAVRKRPGMYIGTTD-SQGLMHCLWEIIDNSVDEALAGACNHIVV 61 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 T+H+D SV V D+GRGIP + P+ ++ EV++T LHAG KF ++SY SGGLHGVG S Sbjct: 62 TLHSDGSVEVADNGRGIPVDVEPKTKLTGVEVVLTKLHAGAKFGNSSYGASGGLHGVGSS 121 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQ------------------------APLAVT 157 VVNALS +L++ + R+GK H + G P L + Sbjct: 122 VVNALSSRLDVEVDRDGKTHHMSFHQGHPGVYADADPEHPSPDSPFKRTRKNRPTELEII 181 Query: 158 GE--TEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK 212 G+ + TGT +R+W E F + EF YE L R+R+ SFL G+ I + D+ + Sbjct: 182 GKVSPKTTGTRIRYWADPEIFNDTAEFSYEQLIDRVRQTSFLVPGLKITVIDENIPE 238 Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats. Identities = 61/273 (22%), Positives = 105/273 (38%), Gaps = 49/273 (17%) Query: 573 PALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWV-- 630 +G LEK+V E +A + E K L+ P L++ ++ ++ Sbjct: 500 KEQSGRVLEKIVGEMHARIQARKTKEVTRRKNALESASMPPKLSDCQPGNDDVAELFIVE 559 Query: 631 ------------------------------NALVSELNDKEQHGSQWKFD-----VHTNA 655 A ++++ ++ + + + Sbjct: 560 GDSALGTAKAARNSGFQALLPIRGKILNVQKASLAQMLSNKECAAIIQVVGAGSGASFDI 619 Query: 656 EQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIE------R 709 EQ + I+ + VD + + YR + L E Sbjct: 620 EQARYNKIIMMTDADVDGAHI--RILLLTLFYRYMRPLIEHGHVYAAVPPLHRIALTGAH 677 Query: 710 GERRQPVASFEQALDWLVKESRRGL----SIQRYKGLGEMNPEQLWETTMDPESRRMLRV 765 S ++ L + R+ + IQRYKGLGEM+ +QL +TTMDP +R + R+ Sbjct: 678 KGEYIYTYSDDELAGKLSELERKHIAYNDDIQRYKGLGEMDADQLADTTMDPRTRMLRRI 737 Query: 766 TVKDAIAADQLFTTLMGDAVEPRRAFIEENALK 798 ++DA A+++F+ LMGD V PR+AFI ENA Sbjct: 738 RMEDAEQANEIFSLLMGDDVPPRKAFIVENADD 770 >UniRef50_B2ZYK3 Type IIA topoisomerase n=1 Tax=Ralstonia phage RSL1 RepID=B2ZYK3_9CAUD Length = 882 Score = 359 bits (921), Expect = 3e-97, Method: Composition-based stats. Identities = 188/836 (22%), Positives = 324/836 (38%), Gaps = 78/836 (9%) Query: 5 YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIH 64 YDS+SI+ + VR P MYIG D GL + E++DN DE +A + + Sbjct: 9 YDSTSIETQRFPHNVRASPAMYIGGVD-AYGLWTVTKELLDNGADEFMAQRNDAVFLHFD 67 Query: 65 ADNSVSVQDDGRGIPTGIHP----------EEGVSAAEVIMTVLHAGGKFDDNSYKVSGG 114 AD S V D G GIP G+ + + + + LH GK+ +Y VS G Sbjct: 68 ADGSYWVWDHGHGIPQGVKTFKLNLNGKVVTQKMPTMQAVFGELHTSGKYRSEAYAVSIG 127 Query: 115 LHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAV-------TGETEKTGTMV 167 HGVG NA ++ ++ EG+ ++ G P+ TG+ K GT++ Sbjct: 128 SHGVGSKGTNATAEYFDVWTLYEGRWSSIKFKKGELAQPVKECSAPKLPTGKPLKKGTLI 187 Query: 168 RFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVE 227 F P F+ V F + + +S++N G+SI L K+ + + G + ++E Sbjct: 188 HFKPDASIFS-VKSFPPSMAVEWATVMSYMNPGLSIHLSSKK--GAKTYLSKKGPQEYIE 244 Query: 228 YLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRA 287 + F D V +A DG I TN++ GG H+ Sbjct: 245 H-RLAALKTEGERQMFVHHDDLSDVVLAFTNYDGCD--IRGMTNSVTNGQGGKHVDSVTG 301 Query: 288 AMTRTLNAYMDKEGYSKKAKVSATGD----DAREGLIAVVSVKVPDPKFSSQTKDKLVSS 343 A+ L ++ + + KV D +EGL+ +V+ K+ +FSSQ K +L + Sbjct: 302 AVYAGLKPWIKTKKVKEDGKVKVVPAFRETDLKEGLVGLVNAKLHKAQFSSQDKARLTDN 361 Query: 344 EVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGL 403 + E+ + + + EN A+ + + + +++ A+ GL Sbjct: 362 RLGKDYEEAITKKFVAFFKENKALAQRLCDRATKLNELKTKFTMSKKAAATLNAVKRNGL 421 Query: 404 PGKLADCQE-RDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 462 P K A EL+LVEGDSAGGS K R QA+LPLKGK+LN K K L Sbjct: 422 PAKYAAFNSDTKVHDRELFLVEGDSAGGSLKDAR-LPYQAVLPLKGKVLNALKDNKGKAL 480 Query: 463 SSQEVATLITALGCGIGRDEYNP-DKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQ---- 517 S E+ ++ A+G +P KL II + D D DG + + F Y++ Sbjct: 481 ESDEIINILAAIG--YDTKAADPLSKLTVGKIICLADPDPDGPFVADTQVRFRYKRTAND 538 Query: 518 -MPEIVERGHV-YIAQPP----LYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNAS 571 P++ + +A P V +EQ+ A Q + ++ + Sbjct: 539 GQPQLATIECLAEMANTPGQEFEVPVYVNGKEQWA---PATAQLERNV---DTLVSMEIG 592 Query: 572 APALAGEALEKLVSEYNATQKMINRMER-------RYPKAMLKELIYQPTL----TEADL 620 K + + + + R + + +Y P + + + Sbjct: 593 GHKYKVSEDHKFLVIRTPSTRNREGLTFSEHLCFMRAADMNIGDRVYAPHMEQGRRDYNR 652 Query: 621 SDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHE 680 D+ + ++ + + + V + F + GV + + Sbjct: 653 QDKTSGHGFMAVNKLRVQKQSAPVPVYCLTV---PRHHHF-----LLPSGVVSSNCHINS 704 Query: 681 FITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESRR-----GLS 735 + G Y+ + L +K + + Q V L + + ++ + Sbjct: 705 LLLGLFYKYLPDLFDKGMVYVSAAPEFYSIYKDQLVTG--DTLSAVQVKLKKLKAPTSTA 762 Query: 736 IQRYKGLGEMNPEQLWETTMDPESRRMLRVT-VKDAIAADQLFTTLMGDAVEPRRA 790 I KG GE + + DP +RR++++ + D F +M + VE RR Sbjct: 763 IHHLKGWGEASENLMRVLAADPATRRLIKIKAISHDDKVD--FVKVMNEDVEYRRR 816 >UniRef50_B6XTR9 Putative uncharacterized protein n=2 Tax=Bifidobacterium RepID=B6XTR9_9BIFI Length = 783 Score = 358 bits (918), Expect = 6e-97, Method: Composition-based stats. Identities = 137/444 (30%), Positives = 232/444 (52%), Gaps = 42/444 (9%) Query: 214 DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIG---------------------V 252 + F + GG++ FV+YL+K + +I+ + E + V Sbjct: 326 EEFCHTGGVRDFVDYLSKGEAV--SDIWRVTGEDTYVEETQAVGDGGELHAQKVTRKCAV 383 Query: 253 EVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEG-----YSKKAK 307 ++A++W +G+ + F N + GGTH+ G+ MT+ + ++ K + Sbjct: 384 DIAMRWTNGYDTTMRSFVNVVETPGGGTHVDGYLLGMTKQIRKAIEDNARKLKVNLKDSN 443 Query: 308 VSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTD 367 + DD GL+AV++V++ +P+F QTKD L +++VK V + ++ E + + Sbjct: 444 MKVERDDILSGLVAVITVRIAEPQFQGQTKDVLGTAQVKPIVSKMTDKQFGEMITGSKRG 503 Query: 368 AKIV----VGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLV 423 K + KI+ AR AR+ +E+TRRK AL+ A +P KL+DCQ + ++EL++V Sbjct: 504 YKEQSGRVLEKIVGEMHARIQARKTKEVTRRKNALESASMPPKLSDCQPGNDDVAELFIV 563 Query: 424 EGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEY 483 EGDSA G+AK RN QA+LP++GKILNV+KA +MLS++E A +I +G G G + Sbjct: 564 EGDSALGTAKAARNSGFQALLPIRGKILNVQKASLSQMLSNKECAAIIQVVGAGSGA-SF 622 Query: 484 NPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKV----KK 539 + ++ RY+ +I+MTDADVDG+HIR LLLT FYR M ++E GHVY A PPL+++ + Sbjct: 623 DIEQARYNKVIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGHVYAAVPPLHRIALTGAR 682 Query: 540 GKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMER 599 + Y D+ + + + + GE +++ + RM R Sbjct: 683 KGEYIYTYSDDELAGKLAELDKKRIGYNEDIQRYKGLGEMDADQLADTTMDPR--TRMLR 740 Query: 600 RYPKAMLKELIYQPTLTEADLSDE 623 R +++ + + D+ Sbjct: 741 RIR---MEDAEQASRIFSLLMGDD 761 Score = 254 bits (649), Expect = 9e-66, Method: Composition-based stats. Identities = 105/237 (44%), Positives = 144/237 (60%), Gaps = 27/237 (11%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 ++Y + S+ VL+GLDAVRKRPGMYIG TD GL H ++E++DN++DEALAG C IIV Sbjct: 8 KDNYGAGSLTVLEGLDAVRKRPGMYIGTTD-SQGLMHCLWEIIDNSVDEALAGVCNHIIV 66 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 T+H+D SV V D+GRGIP I P+ ++ EV++T LHAG KF ++SY SGGLHGVG S Sbjct: 67 TLHSDGSVEVADNGRGIPVDIEPKTKLTGVEVVLTKLHAGAKFGNSSYGASGGLHGVGSS 126 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQ------------------------APLAVT 157 VVNALS +L++ + R+GK H + G P L + Sbjct: 127 VVNALSSRLDVEVDRDGKTHHMSFHQGHPGVYTDVDSEHPSPDAPFKRTRKNRPTELEII 186 Query: 158 GE--TEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK 212 G+ + TGT +R+W E F + EF YE L R+R+ SFL G+ I + D+ + Sbjct: 187 GKVSPKTTGTRIRYWADPEIFNDTAEFSYEQLIDRVRQTSFLVPGLKITVIDENIPE 243 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 61/273 (22%), Positives = 105/273 (38%), Gaps = 49/273 (17%) Query: 573 PALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWV-- 630 +G LEK+V E +A + E K L+ P L++ ++ ++ Sbjct: 505 KEQSGRVLEKIVGEMHARIQARKTKEVTRRKNALESASMPPKLSDCQPGNDDVAELFIVE 564 Query: 631 ------------------------------NALVSELNDKEQHGSQWKFD-----VHTNA 655 A +S++ ++ + + + Sbjct: 565 GDSALGTAKAARNSGFQALLPIRGKILNVQKASLSQMLSNKECAAIIQVVGAGSGASFDI 624 Query: 656 EQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIE------R 709 EQ + ++ + VD + + YR + L E R Sbjct: 625 EQARYNKVIMMTDADVDGAHI--RILLLTLFYRYMRPLIEHGHVYAAVPPLHRIALTGAR 682 Query: 710 GERRQPVASFEQALDWLVKESRRGL----SIQRYKGLGEMNPEQLWETTMDPESRRMLRV 765 S ++ L + ++ + IQRYKGLGEM+ +QL +TTMDP +R + R+ Sbjct: 683 KGEYIYTYSDDELAGKLAELDKKRIGYNEDIQRYKGLGEMDADQLADTTMDPRTRMLRRI 742 Query: 766 TVKDAIAADQLFTTLMGDAVEPRRAFIEENALK 798 ++DA A ++F+ LMGD V PR+AFI ENA Sbjct: 743 RMEDAEQASRIFSLLMGDDVPPRKAFIVENADD 775 >UniRef50_A3Q8K7 DNA topoisomerase (ATP-hydrolyzing) n=6 Tax=Mycobacterium RepID=A3Q8K7_MYCSJ Length = 677 Score = 358 bits (918), Expect = 7e-97, Method: Composition-based stats. Identities = 152/623 (24%), Positives = 249/623 (39%), Gaps = 54/623 (8%) Query: 4 SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH--CKEIIV 61 SY ++ I L + R RP + +G L+ + E++DNAI+E + + Sbjct: 2 SYTAADITELDDVQHTRLRPAVNLG----LDVLNTALRELIDNAIEEVADPSHGGSAVTI 57 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVS--GGLHGVG 119 T+H D SV V DDGRG+P P G + + AGGKF ++ S GL+G+G Sbjct: 58 TLHDDGSVGVADDGRGLPVDSDPVNGKNGIVKTLGTARAGGKFSAHTDAASTGAGLNGIG 117 Query: 120 VSVVNALSQKLELVIQREGKIHRQIYEHG----------VPQAPLAVTG----------E 159 + +S + ++ ++R GK + Q + G P AP + Sbjct: 118 AAAAVFISARTDVTVRRAGKTYLQSFGRGYPGVFEGKDFDPDAPFTRADTQKLRGTGNRK 177 Query: 160 TEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDH---- 215 + GT VR + E+L R + ++ GV + + D+ ++ Sbjct: 178 PDVHGTTVRILFDPAVVPDSQIDIGEVLL-RAHAAARMSPGVHLSVIDEGWPGDEVAPAL 236 Query: 216 ---FHYEGGIKAFVEYLNKNKTPIHPNI-------FYFSTEKDGIGVEVALQWNDGFQEN 265 F G ++ + P + ++T + +L Sbjct: 237 LEPFTGPWGTDTLLDLMCTAAGTPAPGVRAVVEGRGEYTTGRGPTPFRWSLTAGPAEPAT 296 Query: 266 IYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYS--KKAKVSATGDDAREGLIAVV 323 + F N + GG+HL ++ L + K + D V Sbjct: 297 VAAFCNTVRTPGGGSHLTAAMKGLSEALADRASRMRDLGLAKGEEGPEAQDFAAVTALAV 356 Query: 324 SVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLL--ENPTDAKIVVGKIIDAARA 381 + PD + SQ K + S + A+ + + + N + +++ARA Sbjct: 357 DTRAPDVAWDSQAKTAVSSRSLNVAMAPDVARSVTIWAANPANGDAVSLWTKLALESARA 416 Query: 382 REAAR----RAREMTRRKGALDLAGLPGKLADCQERD-PALSELYLVEGDSAGGSAKQGR 436 R +A R+R ++ KG LP KL +E + +EL+L EGDSA G+ K R Sbjct: 417 RRSAEGAKARSRAASKAKGLGTNLSLPPKLLPSRETGRGSGAELFLCEGDSALGTIKAAR 476 Query: 437 NRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIM 496 + QA PLKGK NV +K + E ++ LGCG+ RD +P+ RY I+ Sbjct: 477 DATFQAAFPLKGKPPNVYGFALNKARAKDEFDSIERILGCGV-RDNCDPELCRYDRILFA 535 Query: 497 TDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQ 556 +DAD DG +I + L++ F +VE G VY+ PPL+ VK G Q Y +D+ D Sbjct: 536 SDADPDGGNINSSLISMFLDFYRPLVEAGMVYVTLPPLFVVKDGTQRIYCQDESERDAAV 595 Query: 557 ISIALDGATLHTNASAPALAGEA 579 + GE Sbjct: 596 AKMKATSKR-KVEVQRNKGLGEM 617 Score = 95.9 bits (237), Expect = 6e-18, Method: Composition-based stats. Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 5/104 (4%) Query: 700 LLEEDAFIERGERRQPVASFEQ---ALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMD 756 L ++ G +R + A+ + S+R + +QR KGLGEM+ + W T +D Sbjct: 569 TLPPLFVVKDGTQRIYCQDESERDAAVAKMKATSKRKVEVQRNKGLGEMDADDFWNTVLD 628 Query: 757 PESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAA 800 P+ R ++RV D+ ++L TL G E RR ++ + A + Sbjct: 629 PQRRTVIRVHPDDSE--NKLHHTLFGGPPEGRRTWMADVASRVD 670 >UniRef50_UPI0001924D0A PREDICTED: similar to DNA topoisomerase 2 n=1 Tax=Hydra magnipapillata RepID=UPI0001924D0A Length = 1315 Score = 352 bits (903), Expect = 4e-95, Method: Composition-based stats. Identities = 130/613 (21%), Positives = 240/613 (39%), Gaps = 82/613 (13%) Query: 13 LKGLDAVRKRPGMYIGDT----------------------DDGTGLHHMVFEVVDNAIDE 50 + + P YIG T + G E++ NA D Sbjct: 51 MTLHQHILSAPDTYIGTTTVDEVRMFIFDEDNNKIIEDVINYVAGFFKTFDEILVNARDH 110 Query: 51 ALAGH-CKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNS 108 + CK I +TI D ++V +DG GIP IH + + E+I L + Sbjct: 111 TVRDKTCKNIQITIDRDTGRITVWNDGNGIPVSIHKKYNIYVPEMIFGNLLTSQNYGKKG 170 Query: 109 YKVSGGLHGVGVSVVNALSQKLE----------------LVIQREGKI-HRQIYEHGVPQ 151 V G G + N S++ E + + K+ +RQ +++ + Sbjct: 171 KTVGGKNG-YGAKLCNIYSKEFEIHTIGVDKIKEVDGKIVPDENAKKVEYRQTFKNNMYD 229 Query: 152 APL----AVTGETEKTGTMVRFWPSLETFTN---VTEFEYEILAKRLRELSFLNSG-VSI 203 ++ K T + + P E + +T Y +L KR +++ V+I Sbjct: 230 VGKPDINKKISQSSKQFTQISYIPDYEKYGMNGRLTNDMYSLLVKRCYDIAACTPSTVNI 289 Query: 204 RLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQ 263 + +E I+ + K K P I Y EK E+ + +N Sbjct: 290 SVNGCNIKCR---KFEDYIRLYYSDDPKEK----PKITY---EKVNDRWEIGIGFNKNVG 339 Query: 264 ENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVV 323 + F N I GGTH++ + + A++ K+ + ++ L + Sbjct: 340 DRYISFVNGISTFQGGTHVSHVVNNVVAKVTAFIKKKKEH--KDLKIIPATIKQYLTFFI 397 Query: 324 SVKVPDPKFSSQTKDKLVSSEV--------KSAVEQQMNELLAEYLLENPTDAKIVVGKI 375 + V DP F+SQTK+ + S V+ ++++ E L N ++ ++ Sbjct: 398 NCVVEDPGFNSQTKEYMNSKVADWCTCGNMCKDVKCELSDEFIEKLCGNG-----LMTEV 452 Query: 376 IDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQG 435 ++ ++ +E + ++ G L + L L + A + ++ EGDSA G Sbjct: 453 VNMSKFKEMRDLDKTDGKKVGKLKIPKLKDALW-AGGKKSAKTSIFFTEGDSAQSFVIDG 511 Query: 436 RNR---KNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHS 492 + + + PL+GK+LNV A ++ S+ E + LG G + KLRY S Sbjct: 512 ISVIGQERYGVFPLRGKLLNVRNATAKQIKSNTEFLNIKKILGLKQGVKYKDVSKLRYGS 571 Query: 493 IIIMTDADVDGSHIRTLLLTFFYRQMPEIVE-RGHVYIAQPPLYKVKKGKQEQ--YIKDD 549 +II+TD D DGSHI+ L++ PE+++ G + P+ K K ++ +K Sbjct: 572 VIIITDQDPDGSHIKGLIINMLEYFWPELLQIDGFIKAYNTPIVKAWKKTDKKKASVKQF 631 Query: 550 EAMDQYQISIALD 562 +M +++ ++ Sbjct: 632 YSMSEFEKWRDVE 644 >UniRef50_B4V0A2 DNA gyrase subunit B n=1 Tax=Streptomyces sp. Mg1 RepID=B4V0A2_9ACTO Length = 387 Score = 342 bits (876), Expect = 5e-92, Method: Composition-based stats. Identities = 143/382 (37%), Positives = 202/382 (52%), Gaps = 10/382 (2%) Query: 5 YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIH 64 YD+S I+VL+G +AVRKRPGMY+G T + GL MVFEV D A++E LAG + +T+ Sbjct: 8 YDASHIQVLEGWEAVRKRPGMYVGSTSE-RGLRQMVFEVADRAVNEVLAGRAASVDITLM 66 Query: 65 ADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN 124 D V V DDG G+P G E ++T + AG + V+ G GVG +VVN Sbjct: 67 PDGGVCVADDGPGVPIDETEGAGGPGLEALLTQMQAG-VGTGGRHDVTLGFCGVGPAVVN 125 Query: 125 ALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEY 184 ALS ++ ++REG + Q Y GV PL G +GT + FWP + F TEF + Sbjct: 126 ALSCRMTAEVRREGVLWVQEYARGVAATPLTEVGTATGSGTTIAFWPDADIFG-ATEFSF 184 Query: 185 EILAKRLRELSFLNSGVSIRLRDKRDGKEDH---FHYEGGIKAFVEYLNKNK---TPIHP 238 + L +R RE++FLN G+ I L D R E + GG + V++L+ + TP+ Sbjct: 185 DGLEERFREVAFLNQGLEISLTDLRRPDESRSVRLRFPGGTRDLVDFLDGHAAASTPVDT 244 Query: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 F + G +EVA +W E + F N+ P GGTH GFR MT + AY Sbjct: 245 IAFECEDPRMGGVMEVAFRWCSCPGERVQSFANSRPTV-GGTHAVGFRDGMTAAVTAYAR 303 Query: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 ++G D EGL AVVSVK+ P+F T+ L +SEV+ V Q + + L Sbjct: 304 EQGLLTPMDPGFDADRIGEGLTAVVSVKLDRPEFEGSTRGVLGNSEVRDCVGQAVQDHLG 363 Query: 359 EYLLENPTDAKIVVGKIIDAAR 380 +L E+ A V+G+ + AR Sbjct: 364 RWLKEDRERAAAVIGQSVQGAR 385 >UniRef50_Q9QSK1 DNA topoisomerase 2 n=1 Tax=Invertebrate iridescent virus 6 RepID=TOP2_IIV6 Length = 1132 Score = 341 bits (874), Expect = 8e-92, Method: Composition-based stats. Identities = 165/810 (20%), Positives = 282/810 (34%), Gaps = 122/810 (15%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTD----------------------DGTGLHH 38 M+ S L +D V RP + IG T L Sbjct: 1 MATSNHKKQYTTLSDIDHVLLRPEVIIGSTVPMEQTEYVVDENFSEILEKQVFVSEALIR 60 Query: 39 MVFEVVDNAIDEA-----LAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEG------ 87 + EV+ NA+D + CK I + I D + + +DG+ I +G Sbjct: 61 IFVEVLANAVDNIHRSKGSSTPCKSIKIKIEDDGTTMIHNDGQVIKISKEENDGIEINGK 120 Query: 88 ---VSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLEL--VIQREGKIHR 142 V E++ L + +DD + + G +G+GV N LS+ ++ V K Sbjct: 121 KCSVYNHELVFGHLRSSSNYDDTVVRQTSGKNGLGVKCTNILSKSFKVIGVDPENKKKFV 180 Query: 143 QIYEHGVPQAP-LAVTGETEKTG-TMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNS- 199 Q + + + + VT + KTG T V + P E N + I K + +++ L S Sbjct: 181 QEWTNNMKETSGPKVTTSSSKTGYTEVIYCPDFERLGNFSSDIIGIFRKHVLDVAMLASS 240 Query: 200 -GVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQW 258 GVS+ DK+ IK F +Y K + + E V +A Sbjct: 241 EGVSVYFNDKKLP----------IKKFSDYTKLFK--LEKESISITEEDGSSEVTIAFVE 288 Query: 259 NDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREG 318 DG ++ F N + + GG H+ G+ L + ++K + K + + D Sbjct: 289 RDG-KKKPISFVNGLFTKHGGQHVDGWTKPFFANLLSVLNKPSKTYK-DLKLSLKDVTPY 346 Query: 319 LIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYL----LENPTDAKIVVGK 374 V V P+F Q K+ L S +K + ++ + ++ L+ + K++ GK Sbjct: 347 FRFFVKSTVDKPQFDCQNKNMLKSPCLKYTIPDKIITKVCKWTSVQELKQSSFEKLLKGK 406 Query: 375 IIDAARA-REAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAK 433 + + + RR + + + AG L + EG SA A Sbjct: 407 DNNIIKTLNDKKRRPKVSVKEYDPANKAG---------TTLSEKCTLIVCEGLSAKTYAV 457 Query: 434 QG-------------RNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR 480 G + R ILPL+GK LNV A DKM+ + V L+ A+G G Sbjct: 458 AGISTGISFTGTDTKKGRDWFGILPLRGKFLNVRNANNDKMIKNTVVTDLVNAMGLTFGM 517 Query: 481 DE---YNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQM--------PEIVERGHVYI 529 D + L Y SIII+ D D DG HI L+L FF+ P + + + Sbjct: 518 DYSTQKSRKSLNYGSIIIIPDPDEDGIHIEGLVLNFFHHHFSSLFNPVVPNLKDFPFISS 577 Query: 530 AQPPLYKV----KKGKQEQYIKDDEAMDQYQISIA-LDGATLHTNASAPALAGEALEKLV 584 + P+ KV KG++E EA +++ + E + K+ Sbjct: 578 MKIPIIKVIEKPLKGRREIEFFTHEAFHKFKNENKWHKNHEIKYFKGLGTTKHEDVPKIF 637 Query: 585 SE----YNATQKMINRMERRYPKAMLKELIYQPTLTEADLS------------------- 621 + +N ME+ + E + Sbjct: 638 GKKMVVFNIDDNAHENMEKAFKDEEADERKEWLKQYNPNARTFDLDSPNKILQLNISTFI 697 Query: 622 DEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEF 681 +E+ + + L + + V +Q + ++V G D++ Sbjct: 698 NEELIKFSIEDCKRSLPHLIDGLKESQRKVIFGLKQWNGKNNIKVAQLGAFVAQKTDYKH 757 Query: 682 ITGGEYRRICTLGEKLRGLLEEDAFIERGE 711 + I + + G E G+ Sbjct: 758 GEQNLFDTIIKMAQTFVGANNIPLLEEDGQ 787 >UniRef50_Q56C43 Gp60plus39 DNA topoisomerase subunit n=3 Tax=T4-like viruses RepID=Q56C43_9CAUD Length = 630 Score = 340 bits (871), Expect = 2e-91, Method: Composition-based stats. Identities = 151/599 (25%), Positives = 247/599 (41%), Gaps = 66/599 (11%) Query: 13 LKGLDAVRKRPGMYIGDT----------------DDGTGLHHMVFEVVDNAIDEALAG-- 54 L D +RKRP MY+G + GL ++ E++DN+IDEA+ Sbjct: 30 LSDRDHIRKRPNMYVGSVNREAHERFIMGKFRKVEYVEGLVKIINEILDNSIDEAIRTDF 89 Query: 55 -HCKEIIVTIHADNSVSVQDDGRGIPTG-IHPEEGVSAAEVI--MTVLHAGGKFDDNSYK 110 I V I N V++ D+GRGIP + EG + + T+ +G FDD + + Sbjct: 90 KFANRIEVKIDH-NLVTISDNGRGIPQDDVRTPEGKIVPKPVAAWTMAKSGSNFDDEN-R 147 Query: 111 VSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFW 170 V+ G++GVG + N S + GK I Q T T++ GT V+F Sbjct: 148 VTMGMNGVGSFLTNCYSSIF-IGETSNGKRKVTINCTDGAQNMDYRTSPTKEQGTTVKFT 206 Query: 171 PSLETFT--NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEY 228 P F + E E++ RL L+ V + + F G + Y Sbjct: 207 PDFSIFGVDGIDEETKEVIKDRLMALAVAFPSVKFTYNGETLP--NKFAMYGAM-----Y 259 Query: 229 LNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAA 288 + T + I + DGF++ F N + ++GG H+ Sbjct: 260 GDSTITQTNNKISFILA-----------STEDGFKQK--SFVNGLDTKNGGVHVDCMIDG 306 Query: 289 MTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSV-KVPDPKFSSQTKDKLVSSEVKS 347 + L + KK + +E L VV + P F SQTK+KL ++ + Sbjct: 307 IYAELEPMIK-----KKHAIEIPKARVKECLTLVVFLHNFNAPAFDSQTKEKLTNTAGEF 361 Query: 348 AVEQQMN-ELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGK 406 +N + +A+ +++ ++ + +A EAA + + K A +P Sbjct: 362 NNHAGLNYKKIAKQIMDTSEIITPIIESALIRKQAAEAAAITKAKKKAKKAKIAKHVPAS 421 Query: 407 LADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQE 466 D D + L+L EGDSA G + RN + Q PL+GK LN F +L ++E Sbjct: 422 GID---TDGVETTLFLTEGDSAVGQFIECRNEETQGAFPLRGKPLNTWGMSFTDILKNKE 478 Query: 467 VATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGH 526 + L+ L G + ++ Y +I IM DADVDG I TLL+ FF R PE+ E+ Sbjct: 479 LFELMAILNLHPG----DSSEMAYDNIGIMVDADVDGGDILTLLIAFFSR-WPELFEKKK 533 Query: 527 VYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIA----LDGATLHTNASAPALAGEALE 581 + + P+ K GK E++ + ++ + G + + G+ L+ Sbjct: 534 IRYIRTPIIIAKIGKDEKWFYSMDDFVPFRDKAKEVRYIKGLGSLRKSDYDRVLGDQLK 592 >UniRef50_Q8I528 Term=DNA gyrase subunit B;evidence=inferred from direct assay n=3 Tax=Plasmodium RepID=Q8I528_PLAF7 Length = 1006 Score = 340 bits (871), Expect = 2e-91, Method: Composition-based stats. Identities = 153/456 (33%), Positives = 226/456 (49%), Gaps = 53/456 (11%) Query: 197 LNSGVSIRLRDKRD-GKEDHFHYEGGIKAFVEYLNKNKTPI---HPNIFYFSTEKDGIGV 252 +N + I + D + +E G+ ++ + KNKT + + I S I + Sbjct: 440 VNKNIEITDYNNLDFYNYEIIKHEYGLNEYITNITKNKTNLFKDNDKIISISCYHKNIYI 499 Query: 253 EVALQW-NDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSAT 311 ++ ++W ++ + ENI F NN+ DGGTH+ + A++R +N Y K+ K V+ Sbjct: 500 DLRMKWLSNQYNENIISFVNNVNTTDGGTHVDALKYAVSRCVN-YNIKKNEMIKNFVNIP 558 Query: 312 GDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIV 371 G+ REGL A++SVK+ +P+F QTK KL S +KS +E + E L+E P + Sbjct: 559 GEYIREGLTAILSVKMNNPEFEGQTKTKLGSHHLKSILESVIFEKLSEIFDFEPNLLSSI 618 Query: 372 VGKIIDAARAREAARRAREMTRRKGALDLAG-LPGKLADCQERDPALSELYLVEGDSAGG 430 K + A + E A+ AR++ R K + LPGKL DC D + +E+++VEGDSA G Sbjct: 619 YFKALQAKLSDEEAKAARDLIRSKNNQYSSTILPGKLVDCISDDISRNEIFIVEGDSAAG 678 Query: 431 SAKQGRNRKNQAILPLKGKILNVEK-ARFDKMLSSQEVATLITALGCGIGRDEYNP---- 485 SAKQ RNR+ QAILPLKGKILNVEK ++ + E+ +LITALG + D N Sbjct: 679 SAKQARNREIQAILPLKGKILNVEKIKNNKRIFENSELKSLITALGLNVNYDNKNLKNNN 738 Query: 486 -----------------------------------------DKLRYHSIIIMTDADVDGS 504 + LRY +IIMTDADVDG Sbjct: 739 ILSNNKKGKNSKKKSDLKNSRFESTQNNNNILNKKKDILVDNTLRYGKVIIMTDADVDGE 798 Query: 505 HIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGA 564 HIR LLLTF YR EI+E G+VY+A PPLYK+ K D Q+ ++ Sbjct: 799 HIRILLLTFLYRFQKEIIENGNVYVACPPLYKITYNKFFDNSIKDIVTKQFNVTTKQSKF 858 Query: 565 TLHTNASAPALAGEALEKLVSEYNATQKMINRMERR 600 +HT + L + + M N+++ + Sbjct: 859 IIHTYSDQELNNLLKLLDKDKIASEQKNMQNKIKNK 894 Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 93/281 (33%), Positives = 141/281 (50%), Gaps = 51/281 (18%) Query: 4 SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTI 63 +YD+ I +L+GL+AVRKRPGMYIG+TD GLH ++FE++DN++DE C I V I Sbjct: 122 NYDAKDIVILEGLEAVRKRPGMYIGNTD-VKGLHQILFEIIDNSVDEYNNFECNTIKVVI 180 Query: 64 HADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNS--------------- 108 H D+SV+++D+GRGIP +H + SA E ++TVLH+G KF D+ Sbjct: 181 HKDDSVTIEDNGRGIPCDVHEKTKKSALETVLTVLHSGAKFFDDEMDDEIDNNMNNTGNT 240 Query: 109 ----------------------------------YKVSGGLHGVGVSVVNALSQKLELVI 134 YK S GLHGVG+SV NALS +++ + Sbjct: 241 NTSEKNNRDNISNNNNNNNNNKRTKKNSKESAQKYKYSSGLHGVGLSVANALSSFMKVKV 300 Query: 135 QREGKIHRQIYEHGVPQAPLAVT-GETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRE 193 R KI+ E G L +T K GT + + P F + T+ +++ R+ + Sbjct: 301 FRNNKIYSIELEKGKVTKELTITNCPINKRGTQIHYKPDSSIFKSSTKHNSDLIKNRIHQ 360 Query: 194 LSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKT 234 L++LN ++ D+R ++ + G K+ NK K Sbjct: 361 LAYLNEKLTFYFYDERSENKNSIYISKGNKSNEIIKNKKKN 401 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 35/64 (54%), Positives = 46/64 (71%) Query: 732 RGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAF 791 + IQR+KGLGEM +QLW TTMDP R+++RVTV DAI A+ L +LMG+ + R+ F Sbjct: 937 KKYEIQRFKGLGEMMADQLWNTTMDPTVRKLIRVTVNDAIRANDLIFSLMGEDSKLRKNF 996 Query: 792 IEEN 795 I EN Sbjct: 997 ILEN 1000 >UniRef50_B5H7D6 DNA gyrase subunit B n=2 Tax=Streptomyces RepID=B5H7D6_STRPR Length = 391 Score = 327 bits (838), Expect = 1e-87, Method: Composition-based stats. Identities = 133/380 (35%), Positives = 197/380 (51%), Gaps = 11/380 (2%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 ++ YD++ I+VL+GL+ VRKRPGM++G T + GLH MVFEVV A++E +AG + V Sbjct: 5 AHMYDATHIEVLEGLEVVRKRPGMWVGSTGE-RGLHQMVFEVVGRAVNENVAGRAGSVAV 63 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAG-GKFDDNSYKVSGGLHGVGV 120 + D V V DDG G+P E E ++T +HA + VS +G+G+ Sbjct: 64 ALMPDGEVRVTDDGPGVPAEAVGEAVGPCLEDMLTRIHAQQDAGGRRAIAVSPLGNGLGL 123 Query: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVT 180 V NAL+ L ++R+G Q+Y GV P G +G + F P F Sbjct: 124 GVPNALASSLTAEVRRDGVRWVQVYASGVAVGPPTAAGPAVGSGITLAFRPDAGIF-ETV 182 Query: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE---DHFHYEGGIKAFVEYLNKNKTP-- 235 E +++LA+R REL+FLN G+ I L D+R E + FH GG + FV L + + Sbjct: 183 ECSFDVLAERFRELAFLNRGLDISLSDERSAGECRSERFHSPGGTRDFVLLLGEGRGTGA 242 Query: 236 -IHPNIFYFSTEKDGIG--VEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRT 292 + ++ F E + VEVALQW D +E + + N+ P +GGTH GFR + Sbjct: 243 LVQTDVIGFEREDPRMAGAVEVALQWRDSDEERVRTYANSRPTPEGGTHAEGFRDGVAAA 302 Query: 293 LNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQ 352 +NAY + A D +GL AVVSVK+ P F T +L ++E + VE+ Sbjct: 303 VNAYARQRRLLTSADADLGADRIGKGLTAVVSVKLDQPGFRGATCAELDNTEARFGVEEA 362 Query: 353 MNELLAEYLLENPTDAKIVV 372 + E L +L +P A V+ Sbjct: 363 VREHLGIWLERHPEQAAAVI 382 >UniRef50_C1SL26 DNA gyrase subunit B n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SL26_9BACT Length = 322 Score = 326 bits (835), Expect = 2e-87, Method: Composition-based stats. Identities = 133/336 (39%), Positives = 202/336 (60%), Gaps = 15/336 (4%) Query: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 +ITALG GIG+D++N +KLRYH IIIMTDADVDG+HI TL++TFF+R M EI+ERG++Y+ Sbjct: 1 MITALGTGIGKDDFNIEKLRYHKIIIMTDADVDGAHISTLIMTFFFRYMTEIIERGYLYM 60 Query: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNA 589 A PPLYKVKKGK E+YI+++E M Y + LDG + P E LE L+ Sbjct: 61 ASPPLYKVKKGKSERYIQNEETMVNYLLDQGLDGVDI--AHVQPHRYKELLENLIK---- 114 Query: 590 TQKMINRMERR-YPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWK 648 +M+ + E++ Y + ++K L L + L D+ +V+ L++ + Sbjct: 115 LNRMVTKFEKKGYSRKLVKLLASYDDLHFSKLEDKD----FVDGLLAAMQKYGILDQYVT 170 Query: 649 FDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIE 708 ++ N E + + + +H V ++ + + E+R + LG L+ + + + Sbjct: 171 NEIEFNEEYGRYN--ISLASHSVTVS--INTDLLATPEFRELRRLGVYLKEIGDAPYKLN 226 Query: 709 RGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVK 768 + + + ++ + ++GL +QRYKGLGEMNPEQLWETT+DP+SR + RV ++ Sbjct: 227 VDGEITNFETLTEFVSFVEQRGKKGLGVQRYKGLGEMNPEQLWETTVDPQSRTLYRVRIE 286 Query: 769 DAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 DA A++LF+ LMGD V PRR FIE NAL N+DI Sbjct: 287 DAEMANELFSLLMGDVVAPRREFIENNALNVRNLDI 322 >UniRef50_C3IT50 DNA gyrase subunit B n=3 Tax=Bacillus thuringiensis RepID=C3IT50_BACTU Length = 726 Score = 324 bits (831), Expect = 7e-87, Method: Composition-based stats. Identities = 167/707 (23%), Positives = 300/707 (42%), Gaps = 94/707 (13%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 +S +Y ++SI L+G + VR+RP +G + G H V E+V N++DE AG ++ Sbjct: 4 LSQNYGNNSIDSLEGAERVRRRPAAVLGSSG-IEGARHGVTEIVGNSVDEGTAGFGSKLD 62 Query: 61 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDN------------- 107 + D S+S++D GRG+P G + +G+S ++ ++AGGK+ D Sbjct: 63 INYFKDGSISIRDYGRGVPMGYNENKGISNWFLVFNEMYAGGKYKDYQEELRAIKDWSTF 122 Query: 108 -----SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVP------------ 150 +Y S GL+G+G + S+ E + +G + + G P Sbjct: 123 NPTDYNYLFSIGLNGLGAASTQYTSEFFEAISITDGIATKMEFRGGYPILKDANGNEVHA 182 Query: 151 ---------------QAPLAVTGETEK-TGTMVRFWPSLETFTNVTEFEYEILAKRLREL 194 + +A T ETE+ GT + + P + F++V + + + Sbjct: 183 IIGEERLLEEHGIVLKEYVAETYETEEENGTYIHWKPDIRVFSDV-DITLGWIKDVCESV 241 Query: 195 SFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEV 254 +++ SG+ + L D+ Y+ G + + + K ++ + E + I Sbjct: 242 AYI-SGLDVNLYDEATDTMHE--YQSGTISDLNLILNEKNLVNEDSPSV-YEDNDITHGN 297 Query: 255 ALQWNDGF---------------QENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDK 299 Q N+ F + CF N I + G + A+ + ++ Sbjct: 298 VKQNNENFIYVFKADVSVVRTREKGKTVCFHNAIKMKGGAQY-----RAVDSAVADFVIG 352 Query: 300 EGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAE 359 G +K KV + + L VV + QTKD++ + + ++ + L+ Sbjct: 353 LGNTKGVKVVERDFEGK--LGVVVKSYSNVASYKGQTKDEVDDNFIYRDLKTIIYRLINT 410 Query: 360 YLLENPTDAKIVVGKIIDAARAR----EAARRAREMTR--RKGALDLAGLPGKLADCQER 413 + D V K+++ A R E A+ RE+ + R L LP KL +E+ Sbjct: 411 EYHKGNKDIIEFVDKVLEEAELRITLQEQAKMLREVKKTSRTRKLPEKFLPSKL--FKEK 468 Query: 414 DPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITA 473 SEL++VEGDSA S K R+ QAI ++GK+ N KA F K++ S+E+ + + Sbjct: 469 IVKKSELWIVEGDSAKTSVKNARDPLFQAIYAVRGKVTNALKASFKKLMESEEIRDIFSL 528 Query: 474 LGCG-----IGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVY 528 LG G + +E++ D R+ III TDAD DG IR LL F+ PEI++RG +Y Sbjct: 529 LGTGMDVELLDDNEFDIDACRFEKIIIGTDADEDGYQIRVLLFVVFWVLAPEIIKRGMLY 588 Query: 529 IAQPPLYKVKKGKQE-QYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEY 587 I + P + +K E Y ++ + + A + GE ++ Sbjct: 589 IGETPKFGIKLSNGEMVYAINEVDKAEREKEYAGQIVKVERYKG----LGEVNADVLGFT 644 Query: 588 NATQKMINRMERRYP--KAMLKELIYQPTLTEADLSDEQTVTRWVNA 632 + N ++ + +L E + + ++T+ R + + Sbjct: 645 TLAPETRNLIQIKLDPADHILSEFVETLFGKDPYKKRKETMLRVLGS 691 Score = 57.7 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 3/89 (3%) Query: 704 DAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRML 763 + GE + ++A + + + + ++RYKGLGE+N + L TT+ PE+R ++ Sbjct: 596 GIKLSNGEMVYAINEVDKAERE-KEYAGQIVKVERYKGLGEVNADVLGFTTLAPETRNLI 654 Query: 764 RVTVKDAIAA-DQLFTTLMGDAV-EPRRA 790 ++ + A + TL G + R+ Sbjct: 655 QIKLDPADHILSEFVETLFGKDPYKKRKE 683 >UniRef50_Q76Z86 Topoisomerase II large subunit n=1 Tax=Aeromonas phage Aeh1 RepID=Q76Z86_9CAUD Length = 613 Score = 323 bits (829), Expect = 1e-86, Method: Composition-based stats. Identities = 149/649 (22%), Positives = 251/649 (38%), Gaps = 80/649 (12%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTDDGT----------------GLHHMVFEVVDNAIDE 50 S KVL + MYIG T T GL + EV+DN++DE Sbjct: 2 SQEFKVLSDKEHCLINTDMYIGSTSTETHDVLVDGKFVQIAYVPGLVKITDEVIDNSVDE 61 Query: 51 ALAG---HCKEIIVTIHADNSVSVQDDGRGIPTGI---HPEEGVSAAEVIMTVLHAGGKF 104 A+ H +I V I DN VSV+D+GRG+P G+ V T AG F Sbjct: 62 AIRTNFEHANQIEVVI-KDNQVSVKDNGRGLPQGMVVTPEGVEVPLPLAAWTRARAGSNF 120 Query: 105 DDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTG 164 + + + G +GVG ++ N S + G + T + G Sbjct: 121 SAD--RKTIGKNGVGSALTNFFSDSF-VGETGNGTNTVTVRCTNNADEVSYTTKAGKFKG 177 Query: 165 TMVRFWPSLETFT--NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGI 222 T V F P F + E +++ RL L+ ++ + K+ EG Sbjct: 178 TNVTFVPDFTRFGVFQLDEDFEQVIQSRLLTLAVNFPPITFKYNGKKV--------EGKF 229 Query: 223 KAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 282 F F + V + ++ +++ F N + + GG H+ Sbjct: 230 SKFAAQ------------FGDVVSHNDDNVSLFFATSEEYRQ--LSFVNGVHTKQGGNHV 275 Query: 283 AGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVK-VPDPKFSSQTKDKLV 341 G +++ L + ++ K+ +E L+ + ++ + PK+ QTK++L Sbjct: 276 YGVLDSLSDELIPMIKRQ-----HKIEINKARIKECLLIGLFIRNLVAPKYDGQTKERLS 330 Query: 342 SSEVKSAVEQQM-NELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDL 400 S + + + LA +L+ P V+ II +A A++ A T+ + Sbjct: 331 SPWAQIRDHMNLDYKALARKILKTPE----VIDPIIASALAKKEAADKAAATKAQKKAKK 386 Query: 401 AGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 460 A + +A + L+L EGDSA G + RN + Q PL+GK+LNV + Sbjct: 387 ANVAKHVA-AAGLGRLKTMLFLAEGDSAIGPFTRFRNEETQGSYPLRGKMLNVWNLPDHE 445 Query: 461 MLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDG-SHIRTLLLTFFYRQMP 519 +L ++E+A L+ L + E Y I IMTDAD DG I L + FFY+ P Sbjct: 446 VLKNKEIADLLGILNVELRSKEAPA----YTDIAIMTDADQDGKGSIAMLAIAFFYKFWP 501 Query: 520 EIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEA 579 E+G ++I + P Y GK+ + + S DG H + Sbjct: 502 HWFEQGRIHIVRTPEYISTNGKKTDWSYSRDEFR----SKKFDGKWTHRHIKGLGSLTVE 557 Query: 580 LEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTR 628 + ++ I + + ++ + P L E D++ + Sbjct: 558 GDDC-----EYKQCIENL--VLEQVVIDD--QTPELLEMLFGDDEHKRK 597 >UniRef50_D2XAH7 DNA topoisomerase II n=1 Tax=Marseillevirus RepID=D2XAH7_9VIRU Length = 1089 Score = 323 bits (828), Expect = 2e-86, Method: Composition-based stats. Identities = 130/596 (21%), Positives = 231/596 (38%), Gaps = 70/596 (11%) Query: 25 MYIGDTDDGTGLHHMVFEVVDNAIDEALAG-----HCKEIIVTIHAD-NSVSVQDDGRGI 78 M G + GL + +E+V NA+D K + V++ + +V +DG I Sbjct: 41 MLFGTLEFPEGLERIFYEIVSNAVDNFFRSSVSGIPMKSVKVSLDRETGYCTVWNDGAHI 100 Query: 79 PTGIHP-----------EEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALS 127 + AE+ A ++D+ + + G +G+G + + S Sbjct: 101 SVEKKEYSYTDELGNTSSSLLYPAELFFGYSKASTNYNDDEVRKTSGRNGLGAKLTSIFS 160 Query: 128 QKLELVIQREGK--IHRQIYEHGVPQ-APLAVTGETEKTG-TMVRFWPSLETFT--NVTE 181 + + K I +Q + + + P + T+K G T VRF P F TE Sbjct: 161 KHFVVRCFDPEKQRIFQQEFFDNLTRRTPPVIEKCTKKKGWTEVRFLPDFARFGLDGWTE 220 Query: 182 FEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIF 241 K LR+ + L +G+S E+ F ++ + +V + + +PN Sbjct: 221 PLLSRFQKTLRD-ASLVTGLSASFN------EEKFSFQT-LPEYVALFSGS----NPNFL 268 Query: 242 YFSTEKDGIGV---EVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAA-MTRTLNAYM 297 S+ + L + QE F N + G H+ ++ A + L A+ Sbjct: 269 CLSSPDSRFALLEKNPELVPTEPSQETSLSFVNGLE-VFTGVHVNAWKNAVLMPLLKAFN 327 Query: 298 DKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVK--SAVEQQMNE 355 K+ K K S + L V + P+F+SQTK +L S K +Q+ + Sbjct: 328 AKQKAEGKPKASMKQLECFFHLFVVCDL--DKPEFTSQTKHELASPTPKTTKVSPEQIKK 385 Query: 356 LLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDP 415 L+ ++ + +D + ++ + ++T+ A Sbjct: 386 LMKWGFVQ-------ELSSRLDPKKTKKTKKLVLDLTKVDDAQL----------AGTSRS 428 Query: 416 ALSELYLVEGDSAGGSAKQG----RNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLI 471 A L L EGDSA A G ++R+ LKGK+LN A + ++E+ L Sbjct: 429 AECILILTEGDSAKTLAVSGFTSLKDRERYGAFALKGKVLNTTNATQKTIGKNKELELLK 488 Query: 472 TALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQ 531 LG + LRY +++M DAD DG HI L+L F ++ PE++E+G V + Sbjct: 489 NVLGL----SKDLGKTLRYGKVLLMCDADEDGKHIEGLVLNFLHKHYPELLEKGFVQSLR 544 Query: 532 PPLYKVKKGKQEQYIKDDEAMDQYQISI-ALDGATLHTNASAPALAGEALEKLVSE 586 P+ K GK+E++ +++ + + E K +SE Sbjct: 545 TPILKAFLGKREEWFFSTTKFEEWLSKNPGHKNLKVQYFKGLGSSRPEDGRKYLSE 600 >UniRef50_Q196X4 DNA topoisomerase 2 n=1 Tax=Invertebrate iridescent virus 3 RepID=TOP2_IIV3 Length = 1113 Score = 320 bits (821), Expect = 1e-85, Method: Composition-based stats. Identities = 131/614 (21%), Positives = 218/614 (35%), Gaps = 87/614 (14%) Query: 8 SSIKVLKGLDAVRKRPGMYIGDTD----------------------DGTGLHHMVFEVVD 45 + + V +YIGDT L + EV+ Sbjct: 7 QKYTIKNDIQHVLDCSDVYIGDTAPTARSEWMFDDAVNQIVWRPTTTPEALVRIFVEVLT 66 Query: 46 NAIDEALAG------HCKEIIVTIH-ADNSVSVQDDGRGIPTGIHPEEGV---------- 88 NA+D CK I V + SV +DG+ IP + + GV Sbjct: 67 NAVDNIERSINGGHELCKNIKVDVDLKTGKTSVWNDGQVIPVVKNCDNGVVQPPPPTTEQ 126 Query: 89 -----------SAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELV--IQ 135 +I +D+ + +VS G +GVGV N S +V Sbjct: 127 DRLAYEKLNREYIHTIIFGHFRTSSNYDNETDQVS-GKNGVGVKCTNIFSSWFSVVGVDP 185 Query: 136 REGKIHRQIYEHGVPQ--APLAVTGETEKTGTMVRFWPSLETFT--NVTEFEYEILAKRL 191 Q + + + AP V + T+V + P F + E I K + Sbjct: 186 DRKLKFSQEWRSNMTKSGAPQVVKCALKTGYTLVEYVPDFARFKLKSYPEDVESIFKKLV 245 Query: 192 RELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIF-YFSTEKDGI 250 + S + +R ++ Y Y N N+T + + Y ++ + Sbjct: 246 VDASAFFPNTAFFFNGERTVVKNAVAYAKL------YYNLNETAVDSVVIDYKDSKVVVV 299 Query: 251 GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSA 310 G L F N GG H+ + + L A ++ K VS Sbjct: 300 GSATPLPP--------VSFVNGQITPAGGQHVTNWSRVIFGALLAALNG-----KKNVSL 346 Query: 311 TGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKI 370 T D + KV PKF Q K+ L S +V++ ++ + + + ++ + + K+ Sbjct: 347 TKADIAPYFQLFIHSKVSKPKFDGQNKNCLKSPKVEAHLDATILKKMLKWKIISTIQDKV 406 Query: 371 VVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGG 430 V K A + E R + G L C + ++ Y V G G Sbjct: 407 VKSKEYLALKKIECRRTPIVKVDGYDQANRLGPDSVLIVC---EGLSAKSYAVAGIQKGL 463 Query: 431 SAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDE---YNPDK 487 K+GR ILPL+GK LNV+ K+ ++ V+ I L D N Sbjct: 464 FNKKGR--TYFGILPLRGKFLNVKNTTPLKIGQNKVVSDFIKVLNLKFNLDYRKATNYAT 521 Query: 488 LRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIV-ERGHVYIAQPPLYKVKKGK-QEQY 545 L Y +++I+TDAD DG HI+ L+L + P + +G +Y + P+ K+ K Q Sbjct: 522 LNYGTLLILTDADKDGIHIKGLILNLIHELFPTLFHRQGFIYSMETPIVKILHKKGQPTL 581 Query: 546 IKDDEAMDQYQISI 559 D+ + + ++ Sbjct: 582 FYDENSFEDWRAQH 595 >UniRef50_D2TEU4 Putative DNA topoisomerase n=2 Tax=dsDNA viruses, no RNA stage RepID=D2TEU4_9VIRU Length = 1103 Score = 307 bits (786), Expect = 1e-81, Method: Composition-based stats. Identities = 119/593 (20%), Positives = 235/593 (39%), Gaps = 73/593 (12%) Query: 8 SSIKVLKGLDAVRKRPGMYIGDTD--------------------DGTGLHHMVFEVVDNA 47 ++VL D + RPGMY+G + L ++ E + NA Sbjct: 4 QKMQVLTQHDHILARPGMYVGGVEPVEYNKEVMTMTGPKHVKEMMVPALLKIIEEPLANA 63 Query: 48 IDEALAGH-CKEIIVTIH-ADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFD 105 D + K I VT D+S+ ++ + + + P+ + + ++ G F Sbjct: 64 SDASQNNPVAKNIKVTTDQRDSSIKIETNTKFV-IEYVPDGNDYSVALAVSRFMTGTNFG 122 Query: 106 DNSYKVSGGLHGVGVSVVNALSQKLELVIQR--EGKIHRQIYEHGVPQAPLAVTGET--E 161 D+ G HG+G+ + N S+ E+V+ + + I+ + + +V + + Sbjct: 123 DDDESFKLGQHGLGIKLTNVFSKYFEVVVHDPSTKQSYHGIWTNNMYTVEKSVVKKASHK 182 Query: 162 KTGTMVRFWPSLETFT---NVTEFEYEILAKRLRELSFLNSG-VSIRLRDKRDGKEDHFH 217 + F P L F +T +++I+ ++ +L+ ++ L ++ + Sbjct: 183 TPYVSITFIPDLPYFGLRGPLTAGQWDIIHSQVFDLAVTAPKHTTVHLNGEKIPFK---- 238 Query: 218 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDG-IGVEVALQWNDGFQENIYCFTNNIPQR 276 GIK +++ + + I E +G + +EVA+ E+I + N Sbjct: 239 ---GIKGYIQAVMGDSL---DKICMDKVEVNGTVRLEVAVTIARDHAESIV-YVNGAHTT 291 Query: 277 DGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQT 336 G H F+ SKK ++ + R L+ V +P+ +F+SQ Sbjct: 292 RGTIHDYIFKNI----------ANALSKKHNINPSM--LRGLLLIVAEAWIPNARFTSQA 339 Query: 337 KDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKG 396 K++L + K + +++ + L + + +++ ++ + ++M K Sbjct: 340 KEELYTPVSKYGFKWDLSQSFIKSLAKTD-----LYTSVVNLLHDKDDKKAQKDMKVGKN 394 Query: 397 ALDLAGLPGKLADCQER-DPALSELYLVEGDSAGGSAKQGRN----RKNQAILPLKGKIL 451 + K + +EL + EGDSA A GRN N + PL+GK++ Sbjct: 395 KIPQF---AKYDPATKLFKVNDAELLITEGDSAKQLANVGRNAVKRHANMGLYPLRGKLM 451 Query: 452 NVEKARFDKMLSSQEVATLITALGCGIGRDEY--NPDKLRYHSIIIMTDADVDGSHIRTL 509 N + + +++E++ LI LG + + L Y ++I TD DVDGSHI L Sbjct: 452 NAGNSSLKALAANKEISELIQILGITPYKKYDLASARALPYRHLVIFTDQDVDGSHISGL 511 Query: 510 LLTFFYRQMPEIVERGHVYI--AQPPLYKVKKGKQE-QYIKDDEAMDQYQISI 559 + +P ++E YI P+ K+ GK + D +Y Sbjct: 512 CIQLIMTLVPSLLEVFPDYIKRFATPILKITSGKHAGKTFYTDAEYREYTDKH 564 >UniRef50_B3SFQ4 Putative uncharacterized protein (Fragment) n=1 Tax=Trichoplax adhaerens RepID=B3SFQ4_TRIAD Length = 303 Score = 304 bits (778), Expect = 1e-80, Method: Composition-based stats. Identities = 137/268 (51%), Positives = 191/268 (71%), Gaps = 2/268 (0%) Query: 364 NPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLV 423 NP DAK ++G++ ++A AREAAR+AR+++R++ ++ LPGKLA+CQE+DPA SEL+LV Sbjct: 2 NPKDAKTIIGRMAESAIAREAARKARDLSRKQIGNQISTLPGKLANCQEKDPAKSELFLV 61 Query: 424 EGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEY 483 EGDSAGGSAKQGR+RK QAILPLKGKILNVE+ARFDKML+S E+ TLITALG + E+ Sbjct: 62 EGDSAGGSAKQGRDRKIQAILPLKGKILNVERARFDKMLNSAEIGTLITALGVVLEDKEF 121 Query: 484 NPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQE 543 + KLRYH IIIMTDADVDG+HIRTLLLTFF+R MP ++E+G++YIAQPPLYKVK+G+ + Sbjct: 122 DLTKLRYHKIIIMTDADVDGAHIRTLLLTFFFRYMPGLIEKGYLYIAQPPLYKVKRGQSD 181 Query: 544 QYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPK 603 Y+KD+ A+ Y SI L T+ S + + + L++ ++ + P Sbjct: 182 TYLKDELALRNYLKSIILKNCTVKI--SGREIDEDKTKALLNTLIRFSNIVKNYTNQVPA 239 Query: 604 AMLKELIYQPTLTEADLSDEQTVTRWVN 631 +++EL++ S++ + Sbjct: 240 YIIEELLFLGFFNNEPSSNKINAENLIE 267 >UniRef50_Q04PE7 DNA topoisomerase (ATP-hydrolyzing), subunit B n=6 Tax=Leptospira RepID=Q04PE7_LEPBJ Length = 711 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 145/711 (20%), Positives = 274/711 (38%), Gaps = 126/711 (17%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMV-------FEVVD-------------- 45 + K L ++ VR R GM++G T H +E+V Sbjct: 15 ERNFKKLSNVEHVRMRTGMWLGQNSASTFEQHFFRKNNEGKYEIVHEELEDVPAKLKCLD 74 Query: 46 ----NAIDEALAGH----------CKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSA 90 NA+DE ++IV + +D V++ D+GRGIP + Sbjct: 75 EACMNAVDEYRKNQKDKTIPEKDKMSKLIVQLSSDRKCVTITDNGRGIPA--------AN 126 Query: 91 AEVIMTVLHAGGKFDDNSYKVS-GGLHGVGVSVVNALSQKLELVIQREGKIHRQIY---- 145 AE + L G FDD+ + G +GVG+S+V +S ++ G ++++ Sbjct: 127 AEGVYLHLMYGENFDDHVKQDHVAGQNGVGISLVRMVSNYFKVKTVNNGSSFKKLFTVHD 186 Query: 146 ------------------------EHGV-PQAPLAVTGETEK------------------ 162 EHG L + +K Sbjct: 187 DVKKQIRSYKLSKEDIERVFLYFDEHGKFTDCNLLTKDQIDKLNSLLKKTNMQESIEKAS 246 Query: 163 ---TGTMVRFWPSLETFTNVT-EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHY 218 GT V F + + F N+ F +++ + L++++ N G+ ++ K ++ Sbjct: 247 KEDHGTSVEFELNPKYFNNLDISFNVDLMKQYLQDIAMTNPGLEVQFVFKGKKEKYK--- 303 Query: 219 EGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGF---QENIYCFTNNIPQ 275 ++ H ++ Y+ + G L Q + N+I Sbjct: 304 --------FKKGLDEIFSHSDLVYYKMDYTAPGSASQLHLETYLVIGQNKNLTWVNSIFA 355 Query: 276 RDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQ 335 GG+ + + + KK K S+T +D R V+ ++ +P+F SQ Sbjct: 356 PQGGSAIEYLENRICDEVRKKSQIVALEKKLKTSSTRNDVRNCFHMYVNARLLNPRFKSQ 415 Query: 336 TKDKLVSSEVKSAVEQQMNELLAEYLLENP--TDAKIVVGKIIDAARAREAARRAREMTR 393 K L++ ++ + +++ L +++ + + K+ + K +A E A++ + Sbjct: 416 DKSYLIN-DLNEDIRNAVDKHLEKFIKKTGLLEEIKLQMEKRTQ-LKAFEDAQKGLKKAS 473 Query: 394 RKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 453 R L GK D L++ EGDSA + RN K + PL+GK LN Sbjct: 474 RMNIPKLMPPTGKPGDPG------RVLFVAEGDSAIAGLRPARNPKLHGLFPLRGKPLNC 527 Query: 454 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTF 513 + K ++++E+ ++ +G + + + D+L Y + I+TDAD DG IR+L+L+F Sbjct: 528 KGLSIAKAIANEELKNIVAIVGLPLDQKVKSVDELNYDKVSIITDADFDGYAIRSLMLSF 587 Query: 514 FYRQMPEIVERGHVYIAQPPLYKV-----KKGKQEQYIKDDEAMDQYQISIALDGATLHT 568 FY PE+ E G ++I+ PLY+V K K+ + DD+ + + +G + T Sbjct: 588 FYEYWPELFELGFIHISSAPLYEVDVKFGDKKKETVFCIDDKDYEDLIKRVEKNGGEI-T 646 Query: 569 NASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEAD 619 GE ++ + + + + ++ L + E Sbjct: 647 RKKRNKGLGETGKEAMKFAVDECMTKITIGNKKDASKIQNLWFHKDFAEQR 697 >UniRef50_Q5CQG8 DNA topoisomerase 2 n=4 Tax=Apicomplexa RepID=Q5CQG8_CRYPV Length = 1797 Score = 296 bits (758), Expect = 2e-78, Method: Composition-based stats. Identities = 95/392 (24%), Positives = 168/392 (42%), Gaps = 22/392 (5%) Query: 238 PNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYM 297 P I Y S K E+ + +DG Q F N+I GGTH++ + +NA + Sbjct: 407 PLIIYESVPK----WEIVISESDGGQFQHVSFVNSICTIKGGTHISYVLDPL---INAIL 459 Query: 298 DKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELL 357 K K + + + + + + +P F SQTK+ L + K ++E Sbjct: 460 KKVQTKNKGGMDVKSNHVKNHIWIFIKCLIVNPSFDSQTKETLTTKVSKFGSVCTLSEKT 519 Query: 358 AEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERD--- 414 ++++ +++ ++ E ++ + + L G+P KL D E Sbjct: 520 INSVVKSSIVENVLMW--AQLKQSMELKKKMKSNQKNTVTSRLLGIP-KLEDANEAGGPH 576 Query: 415 PALSELYLVEGDSAGGSAKQGRN---RKNQAILPLKGKILNVEKARFDKMLSSQEVATLI 471 L L EGDSA S G + R + PL+GK+LNV +A F + + + E+ ++ Sbjct: 577 SKKCTLILTEGDSAKTSCLAGLSIVGRDYFGVFPLRGKLLNVREASFKQQIGNVEIQNIL 636 Query: 472 TALGCGIGRDEYN-PDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVE-RGHVYI 529 LG GIG+ N P LRY S+++MTD D DGSHI+ L++ + P ++ RG + Sbjct: 637 KILGLGIGQKYDNGPVNLRYGSLMLMTDQDHDGSHIKGLIINLIHYYWPSLIHFRGFLKQ 696 Query: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQI--SIALDGATLHTNASAPALAGEALEKLVSEY 587 P+ K KKG E +Q++ S L+G ++ ++ Sbjct: 697 FVTPIVKAKKGSNEISFFTLYEYEQWRKNNSSNLNGWRFKYYKGLGTSTDLEFKEYFTKI 756 Query: 588 NATQKMINRMERRYPKAMLKELIYQPTLTEAD 619 + M+ + +A+ ++ + TE Sbjct: 757 ENHSIEFDWMDDQDDEAI--DMAFSKKRTEDR 786 Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 103/252 (40%), Gaps = 41/252 (16%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTDDG----------------------TGLHHMVFEVV 44 + ++ + RP YIG T+ GL+ + E++ Sbjct: 34 EERYQKKTQIEHILLRPDTYIGSTEFHEQALWVWDDSNMKMVYKTINYVPGLYKIFDEIL 93 Query: 45 DNAID----------EALAGHCKEIIVTIHADNS-VSVQDDGRGIPTGIHPEEGVSAAEV 93 NA D + C I V I+ + ++V +DG GIP IH E V E+ Sbjct: 94 VNAADVKAREISTKNNHIFEKCTCIKVEINREKKEITVFNDGEGIPIEIHREHQVYVPEL 153 Query: 94 IMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELV--IQREGKIHRQIYEHGVPQ 151 I L +DDN +V+GG +G G + N S++ ++ G+I + + + + Sbjct: 154 IFGHLLTSDNYDDNEDRVTGGRNGFGAKLTNIFSKEFKVECGDNNTGRIFKMTWYDNMSK 213 Query: 152 APLAVTGE--TEKTGTMVRFWPSLETFTNVTEFEYEILA---KRLRELSFLNSGVSIRLR 206 E + K+ + F P L F N+ +F+ +I++ KR+ ++S SGV + L Sbjct: 214 KSEENIKENYSGKSYVKITFKPDLSRFGNMKDFDDDIISLLNKRVYDISG-TSGVKVYLN 272 Query: 207 DKRDGKEDHFHY 218 +D Y Sbjct: 273 GSLIPIKDFKSY 284 >UniRef50_A7K5X7 DNA gyrase subunit B n=5 Tax=Gammaproteobacteria RepID=A7K5X7_VIBSE Length = 246 Score = 295 bits (756), Expect = 3e-78, Method: Composition-based stats. Identities = 149/246 (60%), Positives = 181/246 (73%) Query: 559 IALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEA 618 +ALD A+LH NA APALAGEALEKLV +YNA K+ RM RRYP A++ ELIY P LT Sbjct: 1 MALDNASLHVNAEAPALAGEALEKLVQQYNAGIKLAERMSRRYPSALVNELIYTPRLTPE 60 Query: 619 DLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLD 678 D V W L+ +LN KE SQ+ ++V + E L P + VRTHGV ++ + Sbjct: 61 QCHDASVVEAWTKQLIEQLNAKEVGASQYSYEVEQHEELGLNLPKIVVRTHGVTHEHAIS 120 Query: 679 HEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQR 738 +F+ EY ++ L E L GLLEE A+I+RGER PVASF +ALDWLVKES RGLS QR Sbjct: 121 IDFLNSKEYGKLADLSEALDGLLEEGAYIKRGERTMPVASFAEALDWLVKESMRGLSRQR 180 Query: 739 YKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALK 798 YKGLGEMNP+QLWETTMDPE+RRM++VT++DA+ ADQLFTTLMGD VEPRR FIEENALK Sbjct: 181 YKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADQLFTTLMGDQVEPRRNFIEENALK 240 Query: 799 AANIDI 804 AN+D+ Sbjct: 241 VANLDV 246 >UniRef50_C9E3K9 DNA gyrase subunit B (Fragment) n=1 Tax=Rhodococcus sp. BX2 RepID=C9E3K9_9NOCA Length = 352 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 122/335 (36%), Positives = 178/335 (53%), Gaps = 37/335 (11%) Query: 144 IYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSI 203 Y + P L T++TGT VRFWP E F T F +E +A+RL+E++FLN G++I Sbjct: 19 TYTNSKP-GELVKGEPTKRTGTTVRFWPDPEIFETTT-FNFETVARRLQEMAFLNKGLTI 76 Query: 204 RLRDKRDGKED----------------------------------HFHYEGGIKAFVEYL 229 L D+ E+ +HY GG++ +V ++ Sbjct: 77 TLTDEGVAPEEVTDEDVPETAEAPKTAEDEAVEAAEPEVHKVKVRTYHYPGGLEDYVRHI 136 Query: 230 NKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 N+ K+PIH ++ F+ + G +EVA+QWN G+ E+++ F N I +GGTH GFRAA+ Sbjct: 137 NRTKSPIHNSVVGFTAKGTGHELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAAL 196 Query: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 T +N Y + K + TGDD REGL A++SVKV +P+F QTK KL ++EVKS V Sbjct: 197 TTVVNRYAKDKKLLKDKDPNLTGDDIREGLAAIISVKVAEPQFEGQTKTKLGNTEVKSFV 256 Query: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 ++ NE ++ + NP DAK +V K + +A AR AAR+ARE+ RRK A + GKL Sbjct: 257 QKACNEHISHWFEANPADAKTIVTKAVSSAHARVAARKARELVRRKSATEHRWSAGKLRR 316 Query: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAIL 444 +DP+ + GDS R Q Sbjct: 317 LPSKDPSSARSTSWRGDSQVAPQVGSR-LDVQGSF 350 >UniRef50_B1N7R8 Gyrase b (Fragment) n=1 Tax=uncultured bacterium RepID=B1N7R8_9BACT Length = 366 Score = 291 bits (745), Expect = 7e-77, Method: Composition-based stats. Identities = 220/366 (60%), Positives = 257/366 (70%), Gaps = 48/366 (13%) Query: 92 EVIMTVLHAGGKFDDNSY-KVSGGLH-GVGVSVVNALSQKLELVI-QREGKIH-RQIYEH 147 EVIMTVLHAGGKFDDNSY +VSGGL GVGVSVVNALS KL L+I R G++H +Q Y H Sbjct: 1 EVIMTVLHAGGKFDDNSYTRVSGGLQDGVGVSVVNALSSKLHLIILHRAGQVHEKQEYHH 60 Query: 148 GVPQAPLAV-TGETEKTGTMV-RFWPSLETFT---NVTEFEYEILAKRL-RELSFLNSGV 201 G Q PL V GET+ +GT V RFWPS TF+ T F EILA+RL RELSFLN+GV Sbjct: 61 GDTQYPLRVLIGETDSSGTTVNRFWPSGLTFSHGECRTIFNVEILARRLLRELSFLNAGV 120 Query: 202 SIRLRDKRDGKEDHF-HYEGGIKAFVEY-LNKNKTPIHP--------------------- 238 I LRD+R E + YEGG+ FV+Y +N+ KT ++ Sbjct: 121 RIVLRDERINLEHVYAXYEGGLSEFVKYFINEGKTHLNEIFHFXTADTENGIGVKYINEG 180 Query: 239 -----NIFYFSTEKD-GIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRA--AMT 290 IF+F+ + D GI VEVALQWND +QEN+ CFTNNIPQ+DGGTHLAGFRA A+T Sbjct: 181 KNHLNEIFHFTADADNGIAVEVALQWNDSYQENVRCFTNNIPQKDGGTHLAGFRALQALT 240 Query: 291 RTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVE 350 R LN Y++ E KK KV+ TGDDAREGL A++SVKVPDPKFSSQTK+KLVSSEVK AVE Sbjct: 241 RGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKPAVE 300 Query: 351 QQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRARE---MTRRKGALDLA----GL 403 Q MN+ + YLLENP AK + GKIIDAARAR+AAR+ARE MTRRK ALD+A Sbjct: 301 QAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREGSYMTRRKSALDIAYPIGLP 360 Query: 404 PGKLAD 409 PGKLAD Sbjct: 361 PGKLAD 366 >UniRef50_P09176 DNA topoisomerase large subunit n=13 Tax=T4-like viruses RepID=TOPL_BPT4 Length = 516 Score = 277 bits (708), Expect = 1e-72, Method: Composition-based stats. Identities = 124/516 (24%), Positives = 224/516 (43%), Gaps = 77/516 (14%) Query: 8 SSIKVLKGLDAVRKRPGMYIGDTDDGT----------------GLHHMVFEVVDNAIDEA 51 + IK+L ++ ++KR GMYIG + + T GL ++ E++DN++DE Sbjct: 4 NEIKILSDIEHIKKRSGMYIGSSANETHERFMFGKWESVQYVPGLVKLIDEIIDNSVDEG 63 Query: 52 LAG---HCKEIIVTIHADNSVSVQDDGRGIP---TGIHPEEGVSAAEVIMTVLHAGGKFD 105 + +I VTI +N V+V+D+GRGIP E + T+ AGG F Sbjct: 64 IRTKFKFANKINVTI-KNNQVTVEDNGRGIPQAMVKTPTGEEIPGPVAAWTIPKAGGNFG 122 Query: 106 DNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGV-PQAPLAVTGETEKTG 164 D+ +V+GG++GVG S+ N S +G+ ++ + G+ + G Sbjct: 123 DDKERVTGGMNGVGSSLTNIFSVMFVGETGDGQNNIVVRCSNGMENKSWEDIPGKWK--G 180 Query: 165 TMVRFWPSLETFT--NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGI 222 T V F P +F +++ +I RL+ L+ + + K+ +G Sbjct: 181 TRVTFIPDFMSFETNELSQVYLDITLDRLQTLAVVYPDIQFTFNGKKV--------QGNF 232 Query: 223 KAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 282 K + +++ E++ + V DGF++ + NNI ++GG H+ Sbjct: 233 KKYARQYDEHA---------IVQEQENCSIAVGRSP-DGFRQ--LTYVNNIHTKNGGHHI 280 Query: 283 AGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVK-VPDPKFSSQTKDKLV 341 + L + + K K+ T +E L V+ V+ + + + QTK++L Sbjct: 281 DCAMDDICEDLIPQIKR-----KFKIDVTKARVKECLTIVMFVRDMKNMRLIRQTKERLT 335 Query: 342 SS--EVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKG--- 396 S E++S ++ L A+ + + + + ++ II+AA AR+ A T+ Sbjct: 336 SPFGEIRSHIQ-----LDAKKISRDILNNEAILMPIIEAALARKLAAEKAAETKAAKKAS 390 Query: 397 -----ALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKIL 451 A L GK AD + L+L EGDSA G R+++ PL+GK+L Sbjct: 391 KAKVHKHIKANLCGKDAD--------TTLFLTEGDSAIGYLIDVRDKELHGGYPLRGKVL 442 Query: 452 NVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDK 487 N + ML ++E+ + G +G + + Sbjct: 443 NSWGMSYADMLKNKELFDICAITGLVLGEKAFEEKE 478 >UniRef50_Q0QCK3 ParE (Fragment) n=163 Tax=cellular organisms RepID=Q0QCK3_ECOLX Length = 251 Score = 277 bits (708), Expect = 1e-72, Method: Composition-based stats. Identities = 102/257 (39%), Positives = 152/257 (59%), Gaps = 6/257 (2%) Query: 292 TLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQ 351 + + + + V + +D + V+SVK+ DP+F+ QTK++L S + + V Sbjct: 1 AMREFCEYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSG 59 Query: 352 QMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQ 411 + + +L +N A+++ I +A+ R R A+++ R+K A LPGKLADC Sbjct: 60 VVKDAFILWLNQNVQAAELLAEMAISSAQRR--MRAAKKVVRKKLTSGPA-LPGKLADCT 116 Query: 412 ERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLI 471 +D +EL+LVEGDSAGGSAKQ R+R+ QAI+PLKGKILN + D++L+SQEV + Sbjct: 117 AQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 176 Query: 472 TALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQ 531 A+G I D + +LRY I I+ DAD DG HI TLL F + +V+ GHVY+A Sbjct: 177 VAIG--IDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 234 Query: 532 PPLYKVKKGKQEQYIKD 548 PPLY++ GK+ Y Sbjct: 235 PPLYRIDLGKEVYYALT 251 >UniRef50_B9PF30 Predicted protein n=6 Tax=cellular organisms RepID=B9PF30_POPTR Length = 252 Score = 272 bits (695), Expect = 4e-71, Method: Composition-based stats. Identities = 144/253 (56%), Positives = 197/253 (77%), Gaps = 1/253 (0%) Query: 552 MDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIY 611 M Q+++++AL+G++L+ N +APA+ G ALEKL+SEYN+ QKMI+ + YP+ +LK LIY Sbjct: 1 MQQFELNLALEGSSLYVNENAPAMNGIALEKLISEYNSVQKMISHLSFHYPEILLKSLIY 60 Query: 612 QPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGV 671 Q LT ++DE V W +LV+ L DK+ GS +K+ + N E++L+E ++ +RTHG+ Sbjct: 61 QKALTNEMMTDESAVDFWAKSLVNILTDKKISGSSYKYRIVFNNERHLYEVVIIIRTHGI 120 Query: 672 DTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESR 731 + +Y L+ EF+ G EY RI LG +L+GLLE+ A++ RGER+Q V+SFEQA++WL KESR Sbjct: 121 EKNYFLNFEFLNGTEYSRIVKLGNQLQGLLEKGAYVSRGERQQSVSSFEQAIEWLTKESR 180 Query: 732 RGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAF 791 RGL IQRYKGLGEMN +QL+ETTMDP R ML+V++KDA+AADQLFTTLMGD VEPRR F Sbjct: 181 RGLIIQRYKGLGEMNSDQLFETTMDPNKRTMLKVSIKDAVAADQLFTTLMGDEVEPRREF 240 Query: 792 IEENALKAANIDI 804 IE NAL+A N+DI Sbjct: 241 IEMNALRA-NLDI 252 >UniRef50_C0F8C8 DNA gyrase, B subunit (Fragment) n=1 Tax=Wolbachia endosymbiont of Muscidifurax uniraptor RepID=C0F8C8_9RICK Length = 288 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 111/306 (36%), Positives = 174/306 (56%), Gaps = 18/306 (5%) Query: 427 SAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPD 486 SAGG+AKQGRNRK QA+L L+GKILNVE+ D++ SS E+ +LITA+G GIG + ++ + Sbjct: 1 SAGGTAKQGRNRKTQAVLALRGKILNVERVSLDRIFSSAEIGSLITAIGAGIGSEHFDIE 60 Query: 487 KLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYI 546 K RYH IIIMTDADVDGSHIRTL+LTFF+R M E++E+G++YIAQPPLYKV K ++ YI Sbjct: 61 KARYHKIIIMTDADVDGSHIRTLILTFFFRHMREVIEKGYLYIAQPPLYKVTKNAKDTYI 120 Query: 547 KDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAML 606 KDDE ++Y I+ A+ TL + A+ L K V N ++ +R P+ +L Sbjct: 121 KDDETFEEYIINSAVKRLTLSSTATEFNDLRLILNKCVGISNISK----NYDREIPQNLL 176 Query: 607 KELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRV 666 + L+ +DE + +++ + SE W+ ++ ++ + + Sbjct: 177 ESLLILSKKNALSSADE--ILKYLKLMYSEYT--------WEVEIKDEEKEIHISKLFQ- 225 Query: 667 RTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWL 726 G+ Y + G + + I +L + + L D+F++ E + S + Sbjct: 226 ---GLADKYIFALSMLEGKDMQNILSLLDGISNLFNGDSFLKSQETEIRITSPSTLAKII 282 Query: 727 VKESRR 732 + ++ Sbjct: 283 MDYGKK 288 >UniRef50_B4YQA0 DNA gyrase subunit B (Fragment) n=1 Tax=Lactobacillus jensenii RepID=B4YQA0_9LACO Length = 258 Score = 268 bits (684), Expect = 8e-70, Method: Composition-based stats. Identities = 98/258 (37%), Positives = 157/258 (60%), Gaps = 4/258 (1%) Query: 132 LVIQREGKIHRQIYEHGVPQAPLAVTGETEKT--GTMVRFWPSLETFTNVTEFEYEILAK 189 + + R+GK + ++HG + L G + + GT+V F+P + FT F+ +IL K Sbjct: 1 VTVMRDGKKYFIDFDHGRVKHELKEIGTVDPSQHGTIVHFYPDPDIFTETIVFDDKILKK 60 Query: 190 RLRELSFLNSGVSIRLRDKRDGKEDH--FHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEK 247 R++EL+FLN G+ + DKR + +HYEGGIK +V +L++ + + Y + Sbjct: 61 RIQELAFLNKGLKLTFTDKRKNSAETDVYHYEGGIKEYVAFLDEKEEKLFDTPVYVEGDY 120 Query: 248 DGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAK 307 DGI VEVALQ+ G++ + F NNI +GG H AGF+ A+TR +N Y K K + Sbjct: 121 DGINVEVALQYTTGYKTTMMTFANNIHTYEGGMHEAGFKTALTRVINDYARKAKIFKDSD 180 Query: 308 VSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTD 367 + +G+D REG+ AV+S+K P+P+F QTK KL +S+ ++AV++ +E +++LLENP+ Sbjct: 181 TNLSGEDIREGMTAVISIKHPNPQFEGQTKTKLGNSDARAAVDKAFSEAFSKFLLENPSV 240 Query: 368 AKIVVGKIIDAARAREAA 385 + +V K A +AR AA Sbjct: 241 GRKIVEKGQLAEKARIAA 258 >UniRef50_A3SXB5 DNA topoisomerase IV subunit B n=1 Tax=Sulfitobacter sp. NAS-14.1 RepID=A3SXB5_9RHOB Length = 308 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 102/247 (41%), Positives = 143/247 (57%), Gaps = 8/247 (3%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 + YD+SSI+VL+ ++ VR RPGMYIG DD LHHMV E++DN++DEA+AGH I + Sbjct: 12 AKEYDASSIQVLEDMEHVRLRPGMYIGGKDD-RALHHMVAEIIDNSMDEAVAGHATWIEL 70 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEE-GVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 +H + V+V+D+GRGIPT HP++ SA E+I L+AGGKF +SY+ SGGLHGVG Sbjct: 71 ELHENGHVTVRDNGRGIPTDPHPKDPSKSALEIIFCTLNAGGKFSGDSYETSGGLHGVGS 130 Query: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGET-EKTGTMVRFWPSLETFTNV 179 SVVNALS L + + R ++ + G+PQ L G + GT V F P E F + Sbjct: 131 SVVNALSDHLRVEVARNRELFAMEFSRGIPQGKLEKIGAAPNRRGTAVTFHPDAEIFGPL 190 Query: 180 TEFEYEILAKRLRELSFLNSGVSIRLR----DKRDGKEDHFHYEGGIKAFVEYLNKNKTP 235 + + L R ++L SGV IR + D +E FH+ GG+ ++ K T Sbjct: 191 -KLKPARLFTMARSKAYLFSGVEIRWKCGQQDGDTPQEATFHFPGGLSDYLNETLKGSTT 249 Query: 236 IHPNIFY 242 Sbjct: 250 TPSIPLV 256 >UniRef50_A0BK44 Chromosome undetermined scaffold_111, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0BK44_PARTE Length = 1196 Score = 248 bits (632), Expect = 9e-64, Method: Composition-based stats. Identities = 67/282 (23%), Positives = 125/282 (44%), Gaps = 17/282 (6%) Query: 293 LNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQ 352 +N K K + + + ++ ++ +P F SQTK+ L + K + Sbjct: 1 MNHIKKKYKEMK----NIKPFQVKSFIKIFLNCQIVNPAFDSQTKETLTTKAQKFGSTFE 56 Query: 353 MNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQ- 411 ++E + +++ ++ +I A++R + +++++ +K L KL D Sbjct: 57 VSEKFLDEIIKKTE----IIDNVILQAKSRLNKQLSKQLSAKKQQRLLG--IDKLEDAND 110 Query: 412 --ERDPALSELYLVEGDSAGGSAKQGR---NRKNQAILPLKGKILNVEKARFDKMLSSQE 466 ++ L L L EGDSA A G R + PL+GK+LNV A ++ + E Sbjct: 111 AGTKNADLCTLILTEGDSAKSLAMAGIEIVGRDRFGVFPLRGKLLNVRDASIQMIMKNAE 170 Query: 467 VATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVE-RG 525 + L+ +G ++ N LRY SI+IMTD D DG HI+ L++ F + P + + +G Sbjct: 171 IEQLVKIMGLQFNKNYENTKSLRYGSIMIMTDQDHDGHHIKGLIINFIEKFWPSLFKMKG 230 Query: 526 HVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLH 567 + P+ KV KGK+ ++ + + Sbjct: 231 FLKQFVTPIIKVTKGKEFHSFFSIGEYKKFIAENPREDYKVK 272 >UniRef50_B0YNR7 DNA gyrase subunit B (Fragment) n=7 Tax=Gammaproteobacteria RepID=B0YNR7_9ENTR Length = 205 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 124/205 (60%), Positives = 164/205 (80%) Query: 574 ALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNAL 633 AL+G +LEKLV ++ + QK +NRMERRYP+A+L ++IYQPTL E DL D + + W+ L Sbjct: 1 ALSGTSLEKLVHQHYSVQKTLNRMERRYPRALLNQMIYQPTLQEGDLKDSEKLQAWMTLL 60 Query: 634 VSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTL 693 V +LN+KE GS + F ++ N E +++P++++RTHGVDTDY LD FI EY++IC Sbjct: 61 VDKLNEKETQGSHYIFVLNKNTENEIYDPVLKIRTHGVDTDYLLDLHFIQSSEYQKICHW 120 Query: 694 GEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWET 753 G++LR LLE AF++RGE++ + SFE+ALDWL+KESRRGL+IQRYKGLGEMNP QLWET Sbjct: 121 GDQLRDLLEPGAFLQRGEKKTCINSFEEALDWLMKESRRGLAIQRYKGLGEMNPGQLWET 180 Query: 754 TMDPESRRMLRVTVKDAIAADQLFT 778 TMDPE+RRML+V +KDAIAADQLFT Sbjct: 181 TMDPETRRMLQVRIKDAIAADQLFT 205 >UniRef50_UPI00016C4A69 DNA gyrase subunit B n=2 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4A69 Length = 294 Score = 228 bits (581), Expect = 7e-58, Method: Composition-based stats. Identities = 93/294 (31%), Positives = 133/294 (45%), Gaps = 30/294 (10%) Query: 1 MSNSYDSSS-----IKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 55 M Y++S + V ++A+R RP M++G T GLH ++FE+V++A+ Sbjct: 1 MKCGYNTSDPIEADLPVEAPMEAIRLRPRMFLGGTG-SRGLHQLLFELVNDALGPLSGDP 59 Query: 56 CKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115 + V + AD V + DD P V A M+ LHA Sbjct: 60 AGVVRVALDADGFVEISDDC-------SPPLNVEAVFSRMSGLHAADS------------ 100 Query: 116 HGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLET 175 SV ALS++L +R G + + + G A G + G VRF P Sbjct: 101 ----RSVACALSEELTARARRSGAVPQCTFRRGQLHAETQFGGPPDDCGLTVRFRPDPAI 156 Query: 176 FTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTP 235 F F+ +I+ RL++ +FLNSGV I D+ G ED F Y GI +V++LN N+TP Sbjct: 157 FG-AARFDPDIIRNRLQQCAFLNSGVRIAFADESSGTEDVFEYPDGIADYVKWLNTNRTP 215 Query: 236 IHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 +H + F E G+ EV LQW F N R GGTH G RAA+ Sbjct: 216 VHAEVIAFDGEAGGVRYEVGLQWCADADALPVSFANGYCTRLGGTHTTGVRAAV 269 >UniRef50_A6N6C7 DNA gyrase subunit B (Fragment) n=1 Tax=uncultured bacterium RepID=A6N6C7_9BACT Length = 353 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 164/431 (38%), Positives = 218/431 (50%), Gaps = 90/431 (20%) Query: 92 EVIMTVLHAGGKFDDNSYKVSGGLHGV-GVSVVNALSQKLELVIQ---REGKIHRQIYEH 147 EVIMTVLHAGGKF + LH G +V + ++ + Q R G + Sbjct: 1 EVIMTVLHAGGKFG----RALNLLHPPQGADIVVSGDRRFDTTPQGGQRRGYLPVVDVGE 56 Query: 148 GVPQ-APLAVTGETEKTGT--MVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIR 204 PQ APL G + G + P ++ R+ + S VS R Sbjct: 57 YCPQGAPLVQHGVCDVVGDVHLCVQLPKRGSYDQCNP----------RKEPYRESCVSER 106 Query: 205 LRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQE 264 D+ + F + EYL++ +T +HP +F+ EKDGI VEVA+QW + +QE Sbjct: 107 RIDR---AREQF-----TRTCPEYLHRTRTVLHPTVFHSVGEKDGITVEVAMQWKESYQE 158 Query: 265 NIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVS 324 N+ CFTNNIPQRDGGTHL RAAM RTLN ++++ ++KAKV TG+D REG V+S Sbjct: 159 NVLCFTNNIPQRDGGTHLTALRAAMPRTLNHFIEENELARKAKVETTGEDMREGRTCVLS 218 Query: 325 VKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREA 384 VKVP PKFSSQTK+KLVSSEV+ AVE+ +++ + +LLE P +A+I+VGKII+AARAREA Sbjct: 219 VKVPPPKFSSQTKEKLVSSEVRPAVEEVVSDQMRSFLLEKPAEARIIVGKIIEAARAREA 278 Query: 385 ARRAREM-TRRKGALDLAG----LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRK 439 ARR R + RR+G L G K+A C+E Sbjct: 279 ARRGRSLPVRRRGETSLRGSLRSPKSKVAPCRE--------------------------- 311 Query: 440 NQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDA 499 +LPL+ + A G D M+DA Sbjct: 312 --GLLPLRS------------------TQRVCVAHWLRQGSRHAVHD---------MSDA 342 Query: 500 DVDGSHIRTLL 510 DVDGSHIRTLL Sbjct: 343 DVDGSHIRTLL 353 >UniRef50_A8NKQ4 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8NKQ4_COPC7 Length = 919 Score = 221 bits (564), Expect = 6e-56, Method: Composition-based stats. Identities = 70/294 (23%), Positives = 118/294 (40%), Gaps = 23/294 (7%) Query: 335 QTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRR 394 QTK+ L K + +++ + K+ I+D + ++M R Sbjct: 357 QTKELLTLPSSKFGSKPTISDEFIK---------KVAHSGIVDNVLNWAKFKADQQMKRA 407 Query: 395 KGALDLAGLP-GKLADCQ---ERDPALSELYLVEGDSAGGSAKQGRN---RKNQAILPLK 447 G L KL+D R L L EGDSA A G R N + PL+ Sbjct: 408 DGTKRSRLLGLAKLSDANNAGTRHAQDCTLILTEGDSAKALAIAGLGVVGRDNFGVFPLR 467 Query: 448 GKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIR 507 GK+LNV +A D+++ ++E+ + +G +D N LRY ++IMTD D DGSHI+ Sbjct: 468 GKLLNVREACHDQVMKNEEIQNIKKIMGLQHNKDYTNTSSLRYGRVMIMTDQDHDGSHIK 527 Query: 508 TLLLTFFYRQMPEIVERG-HVYIAQPPL-YKVKKGKQEQYIKDDEAMDQYQISIALDGAT 565 L++ F P +++ + PL VKKG + + +Q+ Sbjct: 528 GLIINFLDHLYPSLLKIPDFLVEFVTPLSGYVKKGNKVKDFFTIPEYEQWLEETPDARKW 587 Query: 566 LHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEAD 619 + G + +K EY + + + RR + +L + + Sbjct: 588 -----ESKYYKGFSEDKGAREYFSKMEKRFHLHRRKKGTVNIDLAFSKKKADER 636 Score = 189 bits (479), Expect = 5e-46, Method: Composition-based stats. Identities = 53/233 (22%), Positives = 101/233 (43%), Gaps = 30/233 (12%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTDDG----------------------TGLHHMVFEVV 44 S + L L+ + KRP YIG+ + G +V E++ Sbjct: 106 SDHLMTLTQLEHILKRPDSYIGNIEIISTPMWTYDSETIRMVHREVKYVPGFFKIVDEIL 165 Query: 45 DNAIDEALAGH-CKEIIVTIH-ADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGG 102 NA D + + +TI + ++SV ++GRGIP IH +E + E+I L Sbjct: 166 VNAADNKINDPSMDTLKITIDVEEGTISVYNNGRGIPIEIHSKEKMYIPEMIFGHLLTST 225 Query: 103 KFDDNSYKVSGGLHGVGVSVVNALSQKLELV--IQREGKIHRQIYEHGVPQAPLAVTGET 160 +DD+ K++GG +G G + N S + + + + ++Q + + + A + Sbjct: 226 NYDDDEKKLTGGRNGYGAKLANIYSLEFTVETADKNTSQKYKQTWTDNMSKCGKAKITKN 285 Query: 161 EK--TGTMVRFWPSLETFT--NVTEFEYEILAKRLRELSFLNSGVSIRLRDKR 209 + T + F P L+ F ++ E +L +R+ +++ V + L D+R Sbjct: 286 TRGEEYTRITFRPDLKRFGMNSINEDTVNLLKRRVFDMADTVKDVKVLLNDER 338 >UniRef50_Q1CZR7 DNA gyrase, B subunit, truncated n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1CZR7_MYXXD Length = 361 Score = 221 bits (564), Expect = 7e-56, Method: Composition-based stats. Identities = 94/367 (25%), Positives = 164/367 (44%), Gaps = 29/367 (7%) Query: 16 LDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDG 75 ++ VRKRPGMY GD + GLHH+V+ ++D A +EA G C+++++ + D S+++ Sbjct: 11 VENVRKRPGMYCGDVGE-YGLHHLVYFLLDVAYEEARRGECRDVVLEVGGDGSIALFCTS 69 Query: 76 RGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQ 135 R + + T G+ + + L V ALS + ++ I Sbjct: 70 RTVTAE--------NLVRVATGAGFLGRPPGDGWGWDSML-----VVSLALSSRYQVDIW 116 Query: 136 REGKIHRQIYEHGVPQ------APLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILAK 189 +G+ R + EHG PQ P+ + + G V F P F V F+ L++ Sbjct: 117 ADGRQWRVMGEHGHPQGEGAAVTPMEPMPVSAERGVRVHFVPDATIF-EVLAFDRARLSR 175 Query: 190 RLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDG 249 R EL+ L G+ + D + G+ +H GG+ + L + + +HP F DG Sbjct: 176 RCNELAALAPGLRVSFADLQRGERTLWHLPGGVAQWAHVLTEARPQLHPEPVVFDFTWDG 235 Query: 250 IGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVS 309 + V+ ALQW + + F N + G H+ G A+ L S + + + Sbjct: 236 LRVQCALQWCEDEDSTLLSFANAVRTVRHGAHVKGVTQALRGAL------AKLSGETRGA 289 Query: 310 ATGDDAREGLIAVVSVKVPDPK--FSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTD 367 +GL A+V+V P + F+ TK+ L ++ A+ +Q+ L E L E+P Sbjct: 290 FPWARVAQGLTAIVAVSGPRRQMAFAGPTKELLAIPGLEEAIRKQLQPLFIELLREHPVT 349 Query: 368 AKIVVGK 374 ++ + Sbjct: 350 PALLARR 356 >UniRef50_D2J2Q7 DNA gyrase subunit B (Fragment) n=7 Tax=Corynebacterineae RepID=D2J2Q7_9ACTO Length = 249 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 97/250 (38%), Positives = 132/250 (52%), Gaps = 38/250 (15%) Query: 126 LSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYE 185 LS K+EL IQ +G Q Y + P A L T KTGT VRFWP E FT T F E Sbjct: 1 LSTKVELEIQNDGFNWEQTYTYATPGA-LEKGTPTRKTGTTVRFWPDPEIFTETTRFNAE 59 Query: 186 ILAKRLRELSFLNSGVSIRLRDKRDGKED------------------------------- 214 +A+RL+E++FLN G++I L D+R + Sbjct: 60 TVARRLQEMAFLNKGLTITLTDQRPQAIEPPGDADGDEESGTTEAAEVVKSEEEKAAAAA 119 Query: 215 -----HFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCF 269 +HY G+ ++++LN+ K IH + F+ + G VEVA+QWN G+ E+++ F Sbjct: 120 KPKTRTYHYPDGLVDYIKHLNRTKQSIHTTVVGFTGQGTGHEVEVAMQWNAGYSESVHTF 179 Query: 270 TNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSK-KAKVSATGDDAREGLIAVVSVKVP 328 N I +GGTH GFRAA+T T+N Y + K K + +GDD REGL AV+SVKV Sbjct: 180 ANTINTHEGGTHEEGFRAALTLTVNKYAVDKKLIKDKKEDRLSGDDIREGLAAVISVKVG 239 Query: 329 DPKFSSQTKD 338 DP+F QTK Sbjct: 240 DPQFEGQTKT 249 >UniRef50_UPI0001C4799C UPI0001C4799C related cluster n=1 Tax=unknown RepID=UPI0001C4799C Length = 184 Score = 218 bits (556), Expect = 5e-55, Method: Composition-based stats. Identities = 102/208 (49%), Positives = 129/208 (62%), Gaps = 27/208 (12%) Query: 15 GLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDD 74 GL+AVRKRPGMYIG T + GLHH+V+E+VDN+IDEALAG+ +I V I DN + V D+ Sbjct: 1 GLEAVRKRPGMYIGSTSE-RGLHHLVWEIVDNSIDEALAGYANQIEVVIEKDNWIKVTDN 59 Query: 75 GRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVI 134 GRGIP I + G A EVI+T SVVNALSQ LE+ + Sbjct: 60 GRGIPVDIQEKMGRPAVEVILT-----------------------SSVVNALSQDLEVYV 96 Query: 135 QREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLREL 194 R I+ Q Y+ GVPQ L G T+KTGT++RF E FT T + YE L +R+REL Sbjct: 97 HRNETIYHQAYKKGVPQFDLKEVGTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIREL 156 Query: 195 SFLNSGVSIRLRDKRDG---KEDHFHYE 219 +FLN G+ I LRD+RD +ED +HYE Sbjct: 157 AFLNKGIQITLRDERDEENVREDSYHYE 184 >UniRef50_Q6Y3A9 Gyrase B (Fragment) n=1 Tax=Pelobacter acidigallici RepID=Q6Y3A9_PELAC Length = 277 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 103/195 (52%), Positives = 129/195 (66%), Gaps = 2/195 (1%) Query: 120 VSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNV 179 VSVVNALS+ LEL I+ + K+ I G APLA TG T K GT V F P E Sbjct: 1 VSVVNALSKWLELEIRGDEKLFPPILPGGGXVAPLAETGATRKRGTKVTFMP-EEEIFET 59 Query: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKR-DGKEDHFHYEGGIKAFVEYLNKNKTPIHP 238 TEF +++L++RLREL+FLN+GV I + D R D K F+YEGGI +FVEYLN+NK +HP Sbjct: 60 TEFSFDVLSQRLRELAFLNAGVRIGISDMRVDNKSHEFYYEGGINSFVEYLNRNKIAVHP 119 Query: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 YF EK G+ EV++Q+ND F E I+ F NNI +GGTHL GF+AA+TRT+NAY Sbjct: 120 KPIYFRGEKGGVETEVSMQYNDSFDEKIFSFANNINTHEGGTHLVGFKAALTRTMNAYAA 179 Query: 299 KEGYSKKAKVSATGD 313 KK KVS +GD Sbjct: 180 ANNLLKKEKVSISGD 194 >UniRef50_Q2SFQ7 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SFQ7_HAHCH Length = 325 Score = 212 bits (539), Expect = 6e-53, Method: Composition-based stats. Identities = 89/356 (25%), Positives = 160/356 (44%), Gaps = 31/356 (8%) Query: 12 VLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSV 71 +L DAVRKRPGMY GD D ++H+++E+V N +D LAG + V + ++ + V Sbjct: 1 MLSFKDAVRKRPGMYFGDID-HNAVNHVIYELVANVVDLFLAGRATTLKVDV-SECEIIV 58 Query: 72 QDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLE 131 DDG G P + + + E +T H DD++ + G+G++ VNA+S+KL Sbjct: 59 IDDGPGFPFPV-EDSAHNLVERYLTHHHDKPTADDHAPHIHVLGGGLGLAAVNAVSEKLT 117 Query: 132 LVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILAKRL 191 + RQ++ G APL +G+ ++F F N ++ L K + Sbjct: 118 IESSNGAWRWRQVFGKGDVLAPLESFRYDGPSGSSIKFTLDPSVFHNRLP-DFFQLRKAM 176 Query: 192 RELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIG 251 EL+ L SG+ + +R + +G ++ + K +P +F F + + +G Sbjct: 177 FELAHLYSGLIVEFDGER-----YVSKQGLMELAYLMWSGPKWAFNPKMFRFKGQTEDVG 231 Query: 252 VEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSAT 311 EVA + G + N + G H+ G R A+ G++ Sbjct: 232 FEVAAIGDGGSPPCYKSWVNGCETEEHGAHVNGLRQALNYA--------GWAPD------ 277 Query: 312 GDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTD 367 IA++S+ + DPKF+ K + + VKS + + + + L + ++ + Sbjct: 278 --------IALISIVMHDPKFAGPVKSRFCNRRVKSLIAEALADPLKMFKSKSEDN 325 >UniRef50_C1ZHM4 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZHM4_PLALI Length = 325 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 88/355 (24%), Positives = 150/355 (42%), Gaps = 41/355 (11%) Query: 14 KGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSV-SVQ 72 L+A+RKRP MY+G TD GLHH+ E++DNAID+ LA V +H + Sbjct: 4 TDLEAIRKRPAMYVGSTDVN-GLHHLFNELLDNAIDQYLANQAT--YVEVHTSGEILEFT 60 Query: 73 DDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNS---YKVSGGLHGVGVSVVNALSQK 129 DDG G+P S A+ +T + DN +SG G G+ ++ AL++ Sbjct: 61 DDGPGLPFEKPGPHSGSLADYYLTHIRLDTPTADNHTPHIHLSGW--GCGLRIITALTET 118 Query: 130 LELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILAK 189 E+ R +Q + G+ P + G T + GT R + F+ ++ + + Sbjct: 119 CEVTSSRNHLAWKQSFSRGISNGPPHIVGHTSERGTTFRLSIDRDLFSG--DWCQHRMNQ 176 Query: 190 RLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPN-IFYFSTEKD 248 RL E + L G+ ++ + HF G+ + K +P+ I++F+ + Sbjct: 177 RLIEAAHLFPGLLVKSQG------LHFKTLRGLADLAANVAHEKNSPNPDRIWWFNAVFE 230 Query: 249 GIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKV 308 ++ A+ D E F N + GTHL A+ R + A + Sbjct: 231 DFHLQAAIAGTDSETE-WKSFANGNLTIENGTHLT----ALQRVIEACNLRPA------- 278 Query: 309 SATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLE 363 A + V + +P+FS T+ KL E+ S + + + L ++ E Sbjct: 279 -----------AAFIHVIISNPRFSGPTRSKLDVPEIISPIYEALYPSLKSFITE 322 >UniRef50_A9CRV4 DNA gyrase subunit B (Fragment) n=2 Tax=Bradyrhizobium RepID=A9CRV4_9BRAD Length = 272 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 110/169 (65%), Positives = 124/169 (73%), Gaps = 2/169 (1%) Query: 41 FEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHA 100 +EVVDNAIDEALAGH ++VT++ADNSV+V DDGRGIP IH EGVSAAEVIMT LHA Sbjct: 1 YEVVDNAIDEALAGHASRVLVTLNADNSVTVYDDGRGIPVDIHKGEGVSAAEVIMTQLHA 60 Query: 101 GGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGET 160 GGKFD NSYKVSGGLHGVGVSVVNALS KL L I + K H + HG APL V G+ Sbjct: 61 GGKFDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWGDDKEHYIEFAHGDAVAPLKVVGDA 120 Query: 161 -EKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDK 208 K GT V F S ETF N+ E+++ L RLREL+FLNSGV I L D Sbjct: 121 PGKRGTEVTFLASPETFKNI-EYDFATLEHRLRELAFLNSGVHIVLSDH 168 >UniRef50_B1PJM5 DNA gyrase subunit B (Fragment) n=1 Tax=Micromonospora tulbaghiae RepID=B1PJM5_9ACTO Length = 215 Score = 208 bits (529), Expect = 9e-52, Method: Composition-based stats. Identities = 88/218 (40%), Positives = 133/218 (61%), Gaps = 10/218 (4%) Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTE 181 VVNALS ++ + I ++G + Q H P+ PL ET++TG+ V FWP + F + Sbjct: 1 VVNALSPRMGVEIHKDGFVWGQRGNHSKPR-PLEKGEETDRTGSAVCFWPDPD-FFETVD 58 Query: 182 FEYEILAKRLRELSFLNSGVSIRLRDKRDG-------KEDHFHYEGGIKAFVEYLNKNKT 234 F++ + +RL+E++FL G++I L D+R +E FHYEGGI F LN +K+ Sbjct: 59 FDFHTIYRRLQEMAFLTRGLTIHLLDERVPEDEDGKTREVTFHYEGGIGDFGRRLNASKS 118 Query: 235 PIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLN 294 PIH F E+ G+ VE+A+Q N+ + E++Y F NNI +GGTH GFRAA+T +N Sbjct: 119 PIHKTGGEFGAEETGMSVEIAMQGNESYGESVYTFANNIDTHEGGTHEEGFRAALTSVVN 178 Query: 295 AYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKF 332 Y ++ K + +G+D REGL A++SVK+ DP+F Sbjct: 179 RYGAEKKLLKGDE-RLSGEDIREGLAAIISVKLTDPQF 215 >UniRef50_D1AIT2 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AIT2_SEBTE Length = 226 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 84/232 (36%), Positives = 136/232 (58%), Gaps = 11/232 (4%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 MS +D+ SI VL ++ +RK+P M+IG GL ++V+E++DN ++EAL G C I Sbjct: 1 MSEIFDAKSIAVLGIMEGIRKKPEMFIGSV-SAEGLCNLVWEIIDNCVNEALEGFCNTIK 59 Query: 61 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 V + +N + V D+GRG+P + + G S EVI+T + G+ YK+S + G+ Sbjct: 60 VRLLKNNIIEVSDNGRGLPVDFYEKAGKSKLEVILTGKYIRGELTGGIYKLSRKKYKGGL 119 Query: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK--TGTMVRFWPSLETFTN 178 VN LS+ LE V+ ++GK+ Q Y GVP + TGE + GT++RF E F Sbjct: 120 VSVNGLSETLEAVVIKDGKVWYQKYHKGVPSGDIKKTGEKSEYIHGTVIRFRADREIFGE 179 Query: 179 VTEFEYEILAKRLRELSFLNSGVSIRLRDKRD---GKEDHFHYEGGIKAFVE 227 + E++YEIL +L+E+ G+ + L D+R+ GK + F++ G I+ F++ Sbjct: 180 L-EYDYEILLAKLKEI----RGIKVILCDERNEAAGKTESFYFNGEIREFLK 226 >UniRef50_C5Z2Y6 Putative uncharacterized protein Sb10g016438 (Fragment) n=3 Tax=Sorghum bicolor RepID=C5Z2Y6_SORBI Length = 396 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 79/339 (23%), Positives = 131/339 (38%), Gaps = 55/339 (16%) Query: 269 FTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVP 328 F N + +GG +TR + ++ K +K K +D + L A ++ Sbjct: 3 FVNGVV-IEGGVQFD----TITRHVEEHL-KSSIKRKMKNVQNIEDVKSHLWAFINADY- 55 Query: 329 DPKFSSQTKDKLVSSEV-KSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARR 387 P F + + ++ S + K + E LA L E + + K DA RA Sbjct: 56 -PFFYGEPQLQVAHSFIFKEIFRCALKETLAWALKEEDENIEANQTKFQDATRA------ 108 Query: 388 AREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLK 447 D L EGDSA A +R +L LK Sbjct: 109 -----------------------GGVDSQKCTLIFTEGDSAKDLALGSVHRDYFGVLALK 145 Query: 448 GKILNVEKARFDKMLSSQEVATLITALGCGIGR---DEYNPDKLRYHSIIIMTDADVDGS 504 GK+LNV A K+L ++E+ + +G + DE + LRY +++MTD D DG Sbjct: 146 GKLLNVRDASLKKILDNEEINNMRKIIGLDYKKHYNDEKDLKDLRYGKVMVMTDQDPDGF 205 Query: 505 HIRTLLLTFFYRQMPEIVE---RGHVYIAQPPLYK------VKKGKQEQYIKDDEAMDQY 555 HI+ L++ F+ P +++ + + PL K +K+G Q Y KD + +Y Sbjct: 206 HIKGLIINLFHVFWPSLLKIKSKSFLCDLVTPLVKGLGTRTLKEGMQ--YFKDIDIHQKY 263 Query: 556 QISIA-LDGATLHTNASAPAL--AGEALEKLVSEYNATQ 591 + + D + T S + E + + Q Sbjct: 264 FVWVNEEDDKAIKTAFSKHKVEERKEWIYNFLHNCKVAQ 302 >UniRef50_A8V367 Gyrase B (Fragment) n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V367_9AQUI Length = 277 Score = 192 bits (488), Expect = 5e-47, Method: Composition-based stats. Identities = 87/287 (30%), Positives = 143/287 (49%), Gaps = 19/287 (6%) Query: 463 SSQEVATLITALGCGIG------RDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYR 516 S+ EV ++I A+G GIG + ++ KLRYH II+M DADVDGSHI TLLLT FYR Sbjct: 1 SNDEVRSIINAIGTGIGLPTESDEEGFDISKLRYHKIILMADADVDGSHITTLLLTLFYR 60 Query: 517 QMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALA 576 P+++E G +YIAQPPLYK+KKG+ Y+KDDE + + I ALD + L Sbjct: 61 YFPQLIENGFLYIAQPPLYKLKKGRTNIYVKDDEELARIIIDFALDEIEVVD----KKLT 116 Query: 577 GEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSE 636 L+ LV + + + + +R ++ LI L+E DL E+ V+ L + Sbjct: 117 KSQLKNLVKKAKEYKDLRESLIKRRDAKIIDALI-SLKLSEDDLLYEEKTKEIVDKLKNV 175 Query: 637 LNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEK 696 + + E + + + + F+ + + + + +D +T YRRI + E+ Sbjct: 176 ITEYEIYYEK-------DQIEGDFDIVFDKKENFGVSTLRVDTGLLTSYAYRRILEIEEE 228 Query: 697 LRGLLEE-DAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGL 742 + ++ E ++ + E+ D + + G+ + K L Sbjct: 229 FKQIVGEFPVNLKIKGESVNINHIEEFFDKVWETGMHGVKYKDIKVL 275 >UniRef50_Q00942 DNA topoisomerase 2 n=7 Tax=African swine fever virus RepID=TOP2_ASFB7 Length = 1192 Score = 189 bits (479), Expect = 5e-46, Method: Composition-based stats. Identities = 108/578 (18%), Positives = 189/578 (32%), Gaps = 80/578 (13%) Query: 31 DDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHA----DNSVSVQDDGRGIPTGIHP-- 84 D L + E++ NA D A H K VT S ++DG GIP H Sbjct: 49 DHCPALLKIFDELIVNATDHERACHSKTKKVTYIKISFDKGVFSCENDGPGIPIAKHEQA 108 Query: 85 ----EEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKI 140 + V EV AG + + GG +GVG+ + SQ L + Sbjct: 109 SLIAKRDVYVPEVASCFFLAGTNINKAKDCIKGGTNGVGLKLAMVHSQWAILTTADGAQK 168 Query: 141 HRQIYEHGVPQAPLAVTGETEKTGTMVRFWP--------SLETFTNVTEFEYEILAKRLR 192 + Q + + + T + P + T + I + + Sbjct: 169 YVQQINQRLDIIEPPTITPSREMFTRIELMPVYQELGYAEPLSETEQADLSAWIYLRACQ 228 Query: 193 ELSFLNSGVSIRLRDK--RDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI 250 +++ G +I DK R G K + N T I + Sbjct: 229 CAAYVGKGTTIYYNDKPCRTGSVMALA-----KMYTLLSAPNSTIHTATIKADAKPYSLH 283 Query: 251 GVEVALQWNDGFQE-NIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKE--GYSKKAK 307 ++VA + F++ N + G H+ + +T+N + K+ K Sbjct: 284 PLQVAAVVSPKFKKFEHVSIINGVNCVK-GEHVTFLK----KTINEMVIKKFQQTIKDKN 338 Query: 308 VSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTD 367 T D+ + V+ +P +++ Q KD+L +E + Sbjct: 339 RKTTLRDSCSNIFVVIVGSIPGIEWTGQRKDELSIAENVFKTHYSIPSSF---------- 388 Query: 368 AKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDS 427 + I+D + + + GK L EGDS Sbjct: 389 LTSMTRSIVDILLQSISKKDNHKQVDVDKYTRARNAGGK-------RAQDCMLLAAEGDS 441 Query: 428 AGGSAKQGR----------NRKNQAILPLKGKILNVEKA--------------RFDKMLS 463 A + G + ++ L G I+N K R +++ + Sbjct: 442 ALSLLRTGLTLGKSNPSGPSFDFCGMISLGGVIMNACKKVTNITTDSGETIMVRNEQLTN 501 Query: 464 SQEVATLITALGCGIGRDEYNPD---KLRYHSIIIMTDADVDG-SHIRTLLLTFFYRQMP 519 ++ + ++ LG + KLRY I+ D D+DG I LLL +F+ P Sbjct: 502 NKVLQGIVQVLGLDFNCHYKTQEERAKLRYGCIVACVDQDLDGCGKILGLLLAYFHLFWP 561 Query: 520 EIVERGHVYIAQPPLYKV-KKGKQ-EQYIKDDEAMDQY 555 +++ G V PL +V +KGK ++ D + Sbjct: 562 QLIIHGFVKRLLTPLIRVYEKGKTMPVEFYYEQEFDAW 599 >UniRef50_A7C3L4 Topoisomerase B subunit n=1 Tax=Beggiatoa sp. PS RepID=A7C3L4_9GAMM Length = 337 Score = 185 bits (469), Expect = 7e-45, Method: Composition-based stats. Identities = 92/353 (26%), Positives = 151/353 (42%), Gaps = 33/353 (9%) Query: 13 LKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQ 72 L+ AVRKRPGMY GD + G G + +V+E+V NA+D LAG K+I +N++ + Sbjct: 11 LELRQAVRKRPGMYFGDIESG-GANTVVYEIVANAVDIFLAGLAKKIN-IEVNNNNIIIS 68 Query: 73 DDGRGIPTGI--HPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKL 130 DDG G P + ++ E +T H D+++ + G+G++V+NA S+KL Sbjct: 69 DDGPGFPFFKASPQDTSINLVEYYLTNFHNSPTADNHAPHIHILGRGLGLAVLNAASKKL 128 Query: 131 ELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILAKR 190 + K+ Q + G+ +P TG+ V F N +E L K Sbjct: 129 AIESSDGEKLWTQNFGEGMVLSPATHESGNFPTGSKVSITLDPMVFDNHGPNSFE-LRKI 187 Query: 191 LRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPI-HPNIFYFSTEKDG 249 E+ L G+SI KE + G + L K+ + + P +F F +K G Sbjct: 188 FFEVVHLYPGLSIEFE-----KECFYSNNGLVDLGYILLKKSASYMGMPKMFRFHYQKKG 242 Query: 250 IGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVS 309 I +VA + + N + G+H G +A+ K K Sbjct: 243 IEFQVAALGDSKEGTEFRSWVNGCASVENGSHAKGLSSAL------------RLNKWKPE 290 Query: 310 ATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLL 362 A++ V + DPKF+ +D L EV +E+++ + +L Sbjct: 291 I----------ALIHVIMHDPKFAGPCRDALQMPEVLKVIEEKLTPEIKAFLN 333 >UniRef50_Q27537 Chromosome instability 4 n=3 Tax=Chromadorea RepID=Q27537_CAEEL Length = 842 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 53/217 (24%), Positives = 92/217 (42%), Gaps = 12/217 (5%) Query: 385 ARRAREMTRRKGALDLAGLPG--KLADCQ---ERDPALSELYLVEGDSAGGSAKQGRN-- 437 +++ ++ ++ + L G KL D ++ L L EGDSA A G + Sbjct: 19 SKQMDDLNQKCPKRKTSKLKGIPKLEDANDAGTKNSQQCTLILTEGDSAKTLAVSGLSVV 78 Query: 438 -RKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEY---NPDKLRYHSI 493 R + P + K+LNV +++ S EV +I LG + + LRY + Sbjct: 79 GRDKYGVFPFRRKLLNVCDLNVNQIADSAEVNAIIKILGLQYTKKYETEDDFKTLRYGKL 138 Query: 494 IIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMD 553 +IM + D DGS + LLL FF+R P + +R V P+ K +GK+E Sbjct: 139 LIMANHDSDGSQFKGLLLNFFHRFWPALFKRDFVEDFITPIAKATEGKEEVSFYSLPEYS 198 Query: 554 QYQIS-IALDGATLHTNASAPALAGEALEKLVSEYNA 589 +++++ T+ L + +K S+ Sbjct: 199 EWRMNTDNWKSYTIKYYNGLGTLTSKEAKKCFSDMVR 235 >UniRef50_C0SNC2 DNA gyrase subunit B (Fragment) n=87 Tax=Lactobacillales RepID=C0SNC2_9STRE Length = 153 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 69/153 (45%), Positives = 95/153 (62%), Gaps = 3/153 (1%) Query: 126 LSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYE 185 LS +L++ + + G+++ Q Y G L V GET++TGT V F P E FT +EF++ Sbjct: 1 LSTQLDVRVHKNGQVYFQEYRRGQVVDDLKVIGETDRTGTTVHFTPDPEIFTETSEFDFA 60 Query: 186 ILAKRLRELSFLNSGVSIRLRDKRDGKE---DHFHYEGGIKAFVEYLNKNKTPIHPNIFY 242 LAKR++EL+FLN G+ I + DKRDG E +HYEGGI ++VE+LN K I Y Sbjct: 61 KLAKRVQELAFLNKGLRISITDKRDGNEANDKEYHYEGGIVSYVEFLNDTKEVIFNQPIY 120 Query: 243 FSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQ 275 E +GI VEVA+Q+ GF EN+ F NNI Sbjct: 121 TDGEMEGIAVEVAMQYTTGFHENVMSFANNIHT 153 >UniRef50_UPI0001698B4B DNA gyrase, B subunit n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001698B4B Length = 199 Score = 176 bits (447), Expect = 3e-42, Method: Composition-based stats. Identities = 101/157 (64%), Positives = 125/157 (79%), Gaps = 1/157 (0%) Query: 187 LAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTE 246 LAKRLRELSFLNSG I LR++ GKED F Y+GGI AFVE+LN+NKTPIH +F+FST+ Sbjct: 39 LAKRLRELSFLNSGARIILREESSGKEDVFEYKGGILAFVEHLNRNKTPIHKKVFHFSTD 98 Query: 247 KDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKA 306 K+ +GVEVALQWN+ +QENI+C+TNNIPQRDGG+HLAGFRAA+TRTLN Y++KEG KK Sbjct: 99 KNDVGVEVALQWNESYQENIFCYTNNIPQRDGGSHLAGFRAALTRTLNQYIEKEGVLKKH 158 Query: 307 KVSATGDDAREGLIA-VVSVKVPDPKFSSQTKDKLVS 342 KV+ +GDDA+ L + +K F + KDKLVS Sbjct: 159 KVNTSGDDAKGRLDSQFYQLKCLIQSFHLRRKDKLVS 195 >UniRef50_Q6Y3B0 Gyrase B (Fragment) n=1 Tax=Geobacter pelophilus RepID=Q6Y3B0_9DELT Length = 299 Score = 172 bits (437), Expect = 4e-41, Method: Composition-based stats. Identities = 94/222 (42%), Positives = 123/222 (55%), Gaps = 28/222 (12%) Query: 274 PQRDGGTH-LAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKF 332 Q GG H L + ++TRT+N Y +K + G D R + P+ Sbjct: 91 HQHPGGGHALHRLKGSLTRTMNTYATANNLFEKRE----GGDLR---------RRPEGGA 137 Query: 333 SSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVV----------GKIIDAARAR 382 + +++ V+ A + Q EL E + +P + + + R Sbjct: 138 HRGHFGEDLAAAVRGADQDQAGELGGERVRRDPDEREARHLSGRKPGHGQEDPGEIDRCG 197 Query: 383 EAARRAREMTRR----KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNR 438 R A+E K L++ LPGKLADCQE+DPAL EL+LVEGDSAGGSAKQGR+R Sbjct: 198 PGPRGAQERRANSPAAKVRLEVGTLPGKLADCQEKDPALCELFLVEGDSAGGSAKQGRDR 257 Query: 439 KNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR 480 K QAILPLKGKILNVEKARFDKML+SQE+ TLI+ALG IG+ Sbjct: 258 KYQAILPLKGKILNVEKARFDKMLASQEIRTLISALGTSIGK 299 >UniRef50_B9XLD1 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit-like protein n=1 Tax=bacterium Ellin514 RepID=B9XLD1_9BACT Length = 353 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 88/371 (23%), Positives = 147/371 (39%), Gaps = 42/371 (11%) Query: 4 SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTI 63 YDSS I + + VRKRPGMY G + + +M+ +++ +D I +TI Sbjct: 3 QYDSSHIAKMTFKEGVRKRPGMYFG-LNGPAAIPYMLRYIINGVLDTTPDTFTGPIRITI 61 Query: 64 HADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVV 123 NS ++ D + + P + L + K SY S V Sbjct: 62 ---NSGTIITDCPSLSAPLFPPAELEQWF----KLGSDMKPYHQSY----------ASFV 104 Query: 124 NALSQKLELVIQREGKIHRQIYEHGVPQAPLAVT--GETEKTGTMVRFWPSLETFTNVTE 181 A S L +G R YE AP+ T + F P F +T Sbjct: 105 AAASDLFTLE-SCDGTQ-RARYED-HDDAPITRILSPATSPPFLRITFRPFAPVFGTITT 161 Query: 182 FEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFV---EYLNKNKTPIHP 238 E ++ LR+ S L +G++ R E H +Y+ G+ F+ +YL+ P HP Sbjct: 162 AELCKISGMLRDFSLLQAGLATSNRADLLQHEIHHYYQDGLINFLFEADYLHHPHPPSHP 221 Query: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMT-------- 290 + F ++ + VE L++ +G+ + + N + GTHL G A++ Sbjct: 222 DPLSFKATENKMTVEGHLRFTNGYTHQVRTWVNRQST-ESGTHLEGLGLALSGIFPNPSR 280 Query: 291 --RTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSA 348 R + + Y K KV +IA + +++P+P FS T+ L + E + Sbjct: 281 DFRDMAINTNFANYRNKTKVI-----VPHAMIAALHLRLPEPHFSGATRYNLSNPEARDF 335 Query: 349 VEQQMNELLAE 359 V + L + Sbjct: 336 VHRAAAATLKQ 346 >UniRef50_UPI0001788AA3 transcriptional regulator, ArsR family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788AA3 Length = 372 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 67/202 (33%), Positives = 112/202 (55%), Gaps = 8/202 (3%) Query: 6 DSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHA 65 D+S + R GMY G + G +H +++ VV+N+I E +G+ +I + +H Sbjct: 176 DASDYLEMS---ETRNNAGMYFGPSH-GFDIHQLLWAVVENSILEHTSGYGDQIGIFLHE 231 Query: 66 DNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNA 125 D SV+V D+GRGIP P V + I+T +H + V G G+ ++VVNA Sbjct: 232 DGSVTVTDNGRGIPVQALPNSDVPVVQSILTDVHRFNN--SAHFLVPGAEKGISIAVVNA 289 Query: 126 LSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYE 185 LS++L + I+R+G I+RQ Y HG+PQ L G T++TGT V F P E F+ + FE++ Sbjct: 290 LSKQLSVEIRRDGNIYRQEYRHGIPQTGLLTVGLTQETGTSVTFKPETELFS--SAFEFD 347 Query: 186 ILAKRLRELSFLNSGVSIRLRD 207 + + ++ +++ +R+ Sbjct: 348 RILEHKDAIAADYPALALTIRN 369 >UniRef50_Q44273 DNA gyrase subunit B (Fragments) n=5 Tax=Acinetobacter RepID=GYRB_ACIGA Length = 216 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 91/102 (89%), Positives = 96/102 (94%) Query: 393 RRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILN 452 K ALD+AGLPGKLADCQE+DPALSELYLVEGDSAGGSAKQGRNRK QAILPLKGKILN Sbjct: 115 SEKSALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILN 174 Query: 453 VEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSII 494 VE+ARFDKM+SSQEV TLITALGCGIGR+EYNPDKLRYH II Sbjct: 175 VERARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKII 216 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 76/117 (64%), Positives = 85/117 (72%), Gaps = 1/117 (0%) Query: 108 SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMV 167 SYKVSGGLHGVGVSVVNALS KLEL I R G IH+Q Y+HG P PL V G+ E TGT V Sbjct: 1 SYKVSGGLHGVGVSVVNALSSKLELTIHRAGHIHQQEYKHGDPVYPLKVIGDIETTGTTV 60 Query: 168 RFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKA 224 RFWPS ETF+ T F +ILA+RLRELSFLN+GV I LRD+R E F E G+ Sbjct: 61 RFWPSAETFSQ-TIFNVDILARRLRELSFLNAGVRIVLRDERVALEHIFDLEVGLSE 116 >UniRef50_Q9FYE9 DNA gyrase subunit B-like protein n=3 Tax=Arabidopsis thaliana RepID=Q9FYE9_ARATH Length = 257 Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 69/235 (29%), Positives = 120/235 (51%), Gaps = 13/235 (5%) Query: 201 VSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWN- 259 +++ L + + + Y G+ FV +LN +K P+H ++ F E +G + +ALQW Sbjct: 21 ITVSLEMEDNDPNKEYLYAKGLSEFVTWLNADKKPLH-DVLGFRKEINGTTINIALQWCV 79 Query: 260 DGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGL 319 DG+ I + N I DGGT++ G +A++TRTLN+ ++K + + T + EGL Sbjct: 80 DGYSNKILGYANGIRTMDGGTYIDGVKASITRTLNSLVEKSKLVEDKDIIFTEEHVMEGL 139 Query: 320 IAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAA 379 +VSV VP P+F QT +L + V+ V+Q + E L E +P + ++ K +A Sbjct: 140 TCIVSVIVPKPEFEGQT-QRLGNPNVREIVDQSVQECLMESFELHPDVFESIMSKSYNAY 198 Query: 380 RAREAARRAREMTRRKG---ALDLAGLPGKLADCQERDPALS-------ELYLVE 424 + A +RAR++ + + +P KL + +S ELYL++ Sbjct: 199 KTDLAVKRARDVYSSESVAMVCAIESIPMKLTNSSSETSGMSFELKSEKELYLIK 253 >UniRef50_C3RSA4 DNA gyrase subunit B (Fragment) n=3 Tax=Lactobacillales RepID=C3RSA4_9ENTE Length = 156 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 65/156 (41%), Positives = 93/156 (59%), Gaps = 7/156 (4%) Query: 127 SQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-----KTGTMVRFWPSLETFTNVTE 181 S+KLE+ + + GK++ Q ++ G A L V GETE GT V F P E F TE Sbjct: 1 SEKLEVKVFKNGKVYYQDFKRGKINADLKVIGETELHGTEVHGTEVHFVPDPEIFNETTE 60 Query: 182 FEYEILAKRLRELSFLNSGVSIRLRDKR--DGKEDHFHYEGGIKAFVEYLNKNKTPIHPN 239 F ++ LA R+REL+FLN G+ I + D+R + + +HYEGGIK++VE+LN NK + P Sbjct: 61 FNFDKLATRIRELAFLNRGLHISIEDRRPEEPLFNQYHYEGGIKSYVEHLNANKEVLFPE 120 Query: 240 IFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQ 275 Y ++ I VEV++Q+ D F N+ F NNI Sbjct: 121 PIYLEGQQQDINVEVSIQYTDSFHTNLMTFANNIHT 156 >UniRef50_Q2B8E8 DNA gyrase, B subunit n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B8E8_9BACI Length = 350 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 52/193 (26%), Positives = 98/193 (50%), Gaps = 7/193 (3%) Query: 14 KGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQD 73 L+A+R+ P T+ + ++F ++ +A+ E AG I + +H+D S +V D Sbjct: 165 SALEALREEPEKMDMKTEGDFDANILLFSLIHHAVQEHEAGFASRINIYLHSDGSATVSD 224 Query: 74 DGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELV 133 DGRGIP + +S + ++T + D + K G+ V+ +NA S+KL ++ Sbjct: 225 DGRGIPVSLLEGTSMSRLQDVLTDVEKNYLEDSLNEK-----SGIPVAAINAFSEKLTVL 279 Query: 134 IQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRE 193 I+++ I+ Q Y++G + G+T +TGT + F P + F + F L ++ E Sbjct: 280 IKKDTMIYSQEYQYGKALTRVVPIGKTNETGTSITFLPDKKVFK--SGFNAAKLEGKINE 337 Query: 194 LSFLNSGVSIRLR 206 L L+ + + L+ Sbjct: 338 LQGLHPDLLVSLQ 350 >UniRef50_UPI0001908742 DNA topoisomerase IV subunit B n=1 Tax=Rhizobium etli IE4771 RepID=UPI0001908742 Length = 200 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 60/105 (57%), Positives = 75/105 (71%), Gaps = 2/105 (1%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 S+ Y +SSI+VL+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DEA+AGH I V Sbjct: 97 SDEYGASSIRVLEGLEPVRMRPGMYIGGTDE-KALHHLFAEVIDNAMDEAVAGHANFIEV 155 Query: 62 TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFD 105 + ++V D+GRGIP HP+ G S EVIMT LHAGGKFD Sbjct: 156 HLDLQGYLTVTDNGRGIPVENHPQVPGKSTLEVIMTKLHAGGKFD 200 >UniRef50_D2PP74 GCN5-related N-acetyltransferase n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PP74_9ACTO Length = 337 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 49/170 (28%), Positives = 77/170 (45%), Gaps = 7/170 (4%) Query: 9 SIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNS 68 S+ + ++ +R+ P G G+ H+ EV+ +DEA+ G ++ V +HAD S Sbjct: 149 SVADTEHVEQIRQDPAYRAG------GVLHLALEVIAYPLDEAVEGTTTQVRVVLHADGS 202 Query: 69 VSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQ 128 ++V D+GRG + GV + IM D +S ++ GL G+SV ALS+ Sbjct: 203 IAVSDNGRGTAVRFD-DGGVPMVKPIMATRDLRFFADPDSPRLPDGLPRAGMSVPIALSE 261 Query: 129 KLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTN 178 R + YEHG+P+ L TGT + F P F Sbjct: 262 WAVHTNHRTEGSWTRRYEHGMPRGALTAVPADSSTGTTIHFRPDRTLFGE 311 >UniRef50_C7UEA1 Predicted protein n=22 Tax=Enterococcus faecalis RepID=C7UEA1_ENTFA Length = 342 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 66/353 (18%), Positives = 146/353 (41%), Gaps = 35/353 (9%) Query: 14 KGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQD 73 + ++ ++KRP +IG T GL +++ + ++ ++ + + +I + + Sbjct: 14 EFIERIQKRPEAFIGTTGLV-GLENLLVQTINGLLEFFIEKNQGKIAIQLSR-------- 64 Query: 74 DGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELV 133 + I + S ++ +V + +SV+ A S+++ + Sbjct: 65 --QQISFQVS-----STRPLVF-----------EQKQVDLEPPFLYLSVLQAFSKQVGIS 106 Query: 134 IQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRE 193 I +E + IY G + L + E + V FWP + F Y + ++ ++ Sbjct: 107 IDQEKQRTIFIYHQGQLKKRLLLPIEETQERIEVLFWPDTQIFG-TESLSYMRVLQQCQQ 165 Query: 194 LSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVE 253 ++ LN G+ I L + + ++ +Y G+ ++ + N + + + V+ Sbjct: 166 IAMLNPGLKILLTQEEEQ-KNLCYYPKGLSNYL-FEKDNPLTRKAAPIIQAKQTELALVQ 223 Query: 254 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 313 L N Q F N GGTH GF + N +++++ YS +S T D Sbjct: 224 FILSKNHAPQVQ-KTFVNGHYPSLGGTHYEGFLDGVVAAFNQFLEEQHYS----LSVTAD 278 Query: 314 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPT 366 V+++ +P P+++ TK L ++E+ V++ + + L Y +P Sbjct: 279 SFLAEFDFVLAITIPKPRYTDATKTILRNTELYEVVKEVVFDELQHYFQRHPK 331 >UniRef50_A5M9T1 DNA gyrase subunit B n=2 Tax=Streptococcus pneumoniae RepID=A5M9T1_STRPN Length = 128 Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats. Identities = 50/87 (57%), Positives = 64/87 (73%), Gaps = 1/87 (1%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 + YD+S I+VL+GL+AVR RPGMYIG T GLHH+V+E+VDN+IDEALAG I V Sbjct: 10 AQDYDASQIQVLEGLEAVRMRPGMYIGSTSK-EGLHHLVWEIVDNSIDEALAGFASHIQV 68 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGV 88 I D+S++V DDGRGIP I ++ V Sbjct: 69 FIEPDDSITVVDDGRGIPVDIQEKQAV 95 >UniRef50_A0MYL3 DNA gyrase B (Fragment) n=14 Tax=Streptomyces RepID=A0MYL3_9ACTO Length = 138 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 56/137 (40%), Positives = 80/137 (58%), Gaps = 22/137 (16%) Query: 115 LHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLE 174 LHGVGVSVVNALS ++ + ++ +G Q Y+ GVP APLA T++TGT V FW Sbjct: 1 LHGVGVSVVNALSTRVAVEVKTDGHRWTQDYKFGVPTAPLARNEATDETGTSVTFWADGG 60 Query: 175 TFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDH------------------- 215 F TE+ +E L++R +E++FLN G++I+L D+R+ + Sbjct: 61 IF-ETTEYSFETLSRRFQEMAFLNKGLTIKLTDERESAKATAGADVAEVAEIAEAEQVRT 119 Query: 216 --FHYEGGIKAFVEYLN 230 +HYEGGI FV+YLN Sbjct: 120 VSYHYEGGIVDFVKYLN 136 >UniRef50_UPI0000D546F8 DNA gyrase, B subunit n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D546F8 Length = 204 Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats. Identities = 49/176 (27%), Positives = 86/176 (48%), Gaps = 6/176 (3%) Query: 630 VNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRR 689 +N + N K S ++ E+ + I+++ + L + Sbjct: 34 LNDIYKSENIKFTFQSMISNELVFLQEKEGYNKIIKLPL-----EKLLHLREFISPDSLA 88 Query: 690 ICTLGEKLRGLLEEDAFIERGERR-QPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPE 748 + + + + + + + L + S++G SI RYKGLGEMNPE Sbjct: 89 LYNKMGFAKSIDASFGIAKLSTKENFSCYGLVEFFNTLFEMSKKGQSISRYKGLGEMNPE 148 Query: 749 QLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 QLWETT+D +R++L+V ++D + A++ LMGD V R+ FI++N++K AN+DI Sbjct: 149 QLWETTLDRANRKLLQVKLEDQVNAERQLIMLMGDDVTDRKNFIQDNSIKVANLDI 204 >UniRef50_Q9F8M6 DNA gyrase subunit B (Fragment) n=1 Tax=Carboxydothermus hydrogenoformans RepID=Q9F8M6_CARHY Length = 123 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 55/115 (47%), Positives = 73/115 (63%), Gaps = 1/115 (0%) Query: 199 SGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQW 258 S L+D+R KE+ F + GGIK +++YLNKNK P+H I YF EKD + VEVALQ+ Sbjct: 8 SSTREILKDERINKEEIFEHSGGIKDYLKYLNKNKEPLH-KIIYFEKEKDEVVVEVALQY 66 Query: 259 NDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 313 + F ENI FTNNI +GGTH GF+ A+TR +N Y K K+ +S G+ Sbjct: 67 CNSFSENILSFTNNINTTEGGTHEIGFKTALTRVINDYAKKYNLIKENNLSLQGE 121 >UniRef50_Q7UUI4 DNA gyrase subunit B n=1 Tax=Rhodopirellula baltica RepID=Q7UUI4_RHOBA Length = 243 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 41/128 (32%), Positives = 66/128 (51%), Gaps = 7/128 (5%) Query: 415 PALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLI-TA 473 P +EL +VEGDSA S Q R+ Q++L L+GK +NV KA L ++ + T Sbjct: 28 PDQTELVIVEGDSAAKSVNQVRDTTRQSVLALQGKPMNVAKASRSVALRNEVLIRFASTL 87 Query: 474 LGCGIGRDEY------NPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHV 527 L + E D+ RY ++++ D D DG H L+L F R P++++ V Sbjct: 88 LDHKLSASEDWIEALRKADRCRYARLVVLMDPDADGIHCGVLVLGFLLRFAPQLLQERRV 147 Query: 528 YIAQPPLY 535 + +PP++ Sbjct: 148 CVVRPPMF 155 >UniRef50_UPI00016B21F7 DNA gyrase subunit B n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B21F7 Length = 114 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 45/85 (52%), Positives = 60/85 (70%), Gaps = 1/85 (1%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 SYD S I+VL+GL+ VRKRPGMYIG T G+HH++ E+ DN+IDEA+AG+ ++ VT Sbjct: 31 QSYDGSQIQVLEGLEPVRKRPGMYIGSTGYD-GVHHLIKEIADNSIDEAIAGYATKVEVT 89 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEG 87 + D + DDGRGIP HP+ G Sbjct: 90 LLEDGGARISDDGRGIPVDKHPKTG 114 >UniRef50_A6G3Y8 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G3Y8_9DELT Length = 272 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 68/305 (22%), Positives = 127/305 (41%), Gaps = 36/305 (11%) Query: 51 ALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYK 110 L+G C + V++ D+ V DDG G+ P E + E G D Sbjct: 2 HLSGRCSRLYVSLTHDH-FCVVDDGPGL----EPSEVLDQLETHHKKRTRQG--DRAHAH 54 Query: 111 VSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFW 170 V G G+G++++NAL+++LE ++R G++ R ++E V + + G + +GT +R W Sbjct: 55 VIGT--GMGLAMINALARRLEFELRRAGEVRRWVFEGTVLVSENELVGACDDSGTTLRVW 112 Query: 171 PSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLN 230 P E L+ L ++ +L + + L +R F E G+ A++ Sbjct: 113 PDASLMREPLPSRAE-LSAVLEKVHWLCPALRVELDGRR------FSGEAGLAAWIRRQP 165 Query: 231 K-NKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQE-NIYCFTNNIPQRDGGTHLAGFRAA 288 + + +P+ G V +A W D F N G+H+ Sbjct: 166 EWDGSPV--ETLELVDGARGARVGLAWAWLDEPCVARQAAFVNLRETPR-GSHMDALLEG 222 Query: 289 MTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSA 348 + A+ + AR ++A+VSV + +P++ S T++ L E+ + Sbjct: 223 LA---------------ARYGVSPAMARRRVLALVSVVLEEPRYDSPTREVLAQPELGAW 267 Query: 349 VEQQM 353 +E + Sbjct: 268 IEASL 272 >UniRef50_C8NCI6 DNA gyrase subunit B n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NCI6_9GAMM Length = 95 Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 52/85 (61%), Positives = 67/85 (78%), Gaps = 1/85 (1%) Query: 720 EQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTT 779 +++L L+ E ++ IQRYK LGEMN E+LWETT+DP RRML+V +KDA AD++FTT Sbjct: 12 QRSLLALLAEGKKTYDIQRYKDLGEMNSEKLWETTLDPAVRRMLQVQLKDARLADEIFTT 71 Query: 780 LMGDAVEPRRAFIEENALKAANIDI 804 LMG+ VEP RAFIE+NA +ANIDI Sbjct: 72 LMGEEVEPHRAFIEDNA-NSANIDI 95 >UniRef50_Q6E0M3 GyrB (Fragment) n=1 Tax=Bacillus thuringiensis RepID=Q6E0M3_BACTU Length = 116 Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 47/105 (44%), Positives = 67/105 (63%) Query: 111 VSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFW 170 VSGGLHG G + +Q + + REGKIH Q YE G+P A L V G+T++TGT+ RF Sbjct: 1 VSGGLHGCGARLXCLXAQXSXVFVHREGKIHYQKYERGIPVADLKVIGDTDQTGTITRFK 60 Query: 171 PSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDH 215 P E F T ++++ LA R+REL+FLN + + + DKR+ K+ Sbjct: 61 PDPEIFQETTVYDFDTLATRMRELAFLNRNIKLTIEDKREHKQKK 105 >UniRef50_A9ZPQ0 DNA gyrase subunit B (Fragment) n=5 Tax=Corynebacterium RepID=A9ZPQ0_9CORY Length = 183 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 58/185 (31%), Positives = 86/185 (46%), Gaps = 53/185 (28%) Query: 126 LSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYE 185 LS ++E I+REGK Q +++ VP L G TGT +RFW E F TEF+Y+ Sbjct: 1 LSTRVEAEIKREGKHWYQNFQNAVPD-DLVEGGNARGTGTKIRFWADPEIF-ETTEFDYD 58 Query: 186 ILAKRLRELSFLNSGVSIRLRDKRDGK--------------------------------- 212 +A+RL+E++FLN G++I L D+R + Sbjct: 59 TIARRLQEMAFLNKGLTIELIDERVTQAQIELEEIAEAESGEARGDETSFDDIPDAGDTF 118 Query: 213 ------------------EDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEV 254 + FHY G+ +V++LNK+K+ IHP I F + + VEV Sbjct: 119 NEEDDSTNVITADKKRRKKVTFHYPDGLTDYVKFLNKSKSTIHPTIVSFEAKGEEHEVEV 178 Query: 255 ALQWN 259 ALQW+ Sbjct: 179 ALQWS 183 >UniRef50_B1PL25 DNA gyrase subunit B (Fragment) n=79 Tax=Bacteria RepID=B1PL25_ECOLX Length = 67 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 67/67 (100%), Positives = 67/67 (100%) Query: 409 DCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 468 DCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA Sbjct: 1 DCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 60 Query: 469 TLITALG 475 TLITALG Sbjct: 61 TLITALG 67 >UniRef50_A0BK45 Chromosome undetermined scaffold_111, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0BK45_PARTE Length = 221 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 39/155 (25%), Positives = 61/155 (39%), Gaps = 27/155 (17%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDG-----------------------TGLH 37 MS + K++ ++ + RP YIG + GL+ Sbjct: 1 MSKN-VEDVYKMVSQVEHILLRPDTYIGSVEISDQELWICEDSDQISFKFEEFSYCQGLY 59 Query: 38 HMVFEVVDNAIDEALAG-HCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMT 96 + E++ NA D I V+I D S+ V++ G GIP IH + + E+I Sbjct: 60 KIFDEILVNAADNYQRDKSTDRISVSIDND-SIMVENTGAGIPIQIHKQYNIYVPEMIFG 118 Query: 97 VLHAGGKFDDNSYKVSGGLHGVGVSVVN-ALSQKL 130 L +DD+ KV+GG +G G V S Sbjct: 119 RLLTSSNYDDSEQKVTGGRNGFGDKVSQTCFSSIF 153 >UniRef50_B4V6F8 Putative uncharacterized protein n=3 Tax=Actinomycetales RepID=B4V6F8_9ACTO Length = 234 Score = 115 bits (288), Expect = 8e-24, Method: Composition-based stats. Identities = 51/136 (37%), Positives = 64/136 (47%), Gaps = 1/136 (0%) Query: 35 GLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVI 94 GL H+V EVV A DEA + VT+HAD SVSV DDGRG T + G + + + Sbjct: 48 GLRHLVLEVVAYAADEAESRGGGRCTVTLHADGSVSVADDGRGTDTRFD-DSGRAVRKPV 106 Query: 95 MTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPL 154 M + G G+SVV ALS L +R G Q YE+GVP L Sbjct: 107 MATKDLRFFDHPEPPPLPDGHPRRGMSVVAALSAWLVHTNRRAGGAWTQRYEYGVPVTGL 166 Query: 155 AVTGETEKTGTMVRFW 170 + TGT+V F Sbjct: 167 TPVADDGTTGTLVHFR 182 >UniRef50_C7P9T7 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit-like protein n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7P9T7_CHIPD Length = 352 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 75/369 (20%), Positives = 151/369 (40%), Gaps = 38/369 (10%) Query: 16 LDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDG 75 ++++R RP MY+G + G+ ++ ++ + +++ + +T + D+ VSV G Sbjct: 10 IESIRNRPVMYLGSVN-SYGIRRLMKMLITDYLEDVTG--LSTVEITFNPDSFVSVVLSG 66 Query: 76 RGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQ 135 +P E++ V ++K+ +++ A+S+ + + I Sbjct: 67 --MPVD----------ELLHEVAFLQEISSGKNFKI---------ALLIAISRFVLVRIV 105 Query: 136 REGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELS 195 G+IH G+ + + + E G V F + F + + Y + L++L+ Sbjct: 106 VNGEIHSITSHAGIYEVEM-HPADGEPNGIKVDFQLEEQIFKH-NQVAYIPMNIMLQQLA 163 Query: 196 FLNSGVSIRLRDKR-DGKEDHFHYEGGIKA-FVEYLNKNKTPIHPN--IFYFSTEKDGIG 251 +LN G+ I D R + + + F++ GI F + L+K+ T +G Sbjct: 164 YLNPGLKIISVDNRGELQRNVFYFRTGISELFNDLLDKHDYGSMNAWLPIELKTAINGYI 223 Query: 252 VEVALQWNDGFQ----ENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAK 307 V L+++ + I F NN + G+ + G + +KEG K Sbjct: 224 FHVILRYHHIYTVYPAPYIRSFANNEATKGHGSLVEGVLKGLEDAFVEVGEKEGVELKVN 283 Query: 308 VSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTD 367 G L+ +VK + ++KDKL +K V + + + +YL N D Sbjct: 284 KKRIGKM----LVLFAAVKGEPLTYDGRSKDKLDMPGLKKDVRKFVKRGVLKYLESNSGD 339 Query: 368 AKIVVGKII 376 + V+ K I Sbjct: 340 RRRVLEKFI 348 >UniRef50_UPI0000382E10 COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI0000382E10 Length = 122 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 40/81 (49%), Positives = 55/81 (67%), Gaps = 1/81 (1%) Query: 4 SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTI 63 YD+S+I+VL+GL+ VR+RPGMYIG TD+ LHH+ EV+DN++DEA+AGH I + + Sbjct: 43 GYDASAIEVLEGLEPVRRRPGMYIGGTDE-RALHHLFAEVIDNSMDEAVAGHASFIELEL 101 Query: 64 HADNSVSVQDDGRGIPTGIHP 84 + V D GIP HP Sbjct: 102 EDTVCLVVTDIVLGIPFDPHP 122 >UniRef50_Q23CP4 DNA topoisomerase 2 n=3 Tax=Tetrahymena thermophila RepID=Q23CP4_TETTH Length = 784 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 60/328 (18%), Positives = 129/328 (39%), Gaps = 41/328 (12%) Query: 174 ETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVE-YLNKN 232 + + + E E EI+ K + G+ I +D E F +E + LN Sbjct: 82 QIYLDFDEIEGEIVLKTV------GKGIPIEKQDNIFIPELIFSHERTSSNYQNTNLNDP 135 Query: 233 K------------TPIHPNIFYFSTEKDGI-----GVEVALQWNDGFQENIYCFTNNIPQ 275 K T + F T+ D + E + + Q++I F N +PQ Sbjct: 136 KLTGGKNGYGAKLTNVLSEYFEVETKYDNLIFKQLHYEGNTKHSQQLQKDIISFVNGLPQ 195 Query: 276 RDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSAT---GDDAREGLIAVVSVKVPDPKF 332 +GGTH+ + + + + + ++ G R+ + + S+ V P + Sbjct: 196 -NGGTHVNFINQIIKQ--DQLIKNLNVQDQDELEVMKQLGKQYRQNVFIIFSLLVHQPSY 252 Query: 333 SSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMT 392 +SQ+KD+L +++ ++ + + + + ++ ++ + I ++ + ++ Sbjct: 253 TSQSKDQLKTNKKDWFDTIELEKYIQQQIQQSSLLQELKIE--IQQQTKKQQVLKQKDQI 310 Query: 393 RRKGALDLAGLPGKLADCQERDPALSELYL--VEGDSAGGSAKQGRN---RKNQAILPLK 447 ++ KL D + +E L EGDSA + G ++ PLK Sbjct: 311 KKMN----INSVKKLQDAIKIRDRRTECSLLCAEGDSAMSFIRSGLTEQQKQIYGRFPLK 366 Query: 448 GKILNVEKARFDKMLSSQEVATLITALG 475 GK++NV ++ ++ ++ L +L Sbjct: 367 GKLMNVNSKTDRQIGENEILSQLQRSLN 394 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 68/177 (38%), Gaps = 35/177 (19%) Query: 8 SSIKVLKGLDAVRKRPGMYIGD-------------------------TDDGTGLHHMVFE 42 + K +K VR+ MYIG GL ++ E Sbjct: 3 NQYKQMKFELHVRQCADMYIGSIQPEEIMTPIYSKNQENQITLEYKKVKIIPGLLTVIGE 62 Query: 43 VVDNAID--EALAGHCKEIIVTIHAD---NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTV 97 ++ NA D K I + + D + ++ G+GIP ++ + E+I + Sbjct: 63 ILTNARDVMFQQRKQKKGIQIYLDFDEIEGEIVLKTVGKGIPIEK--QDNIFIPELIFSH 120 Query: 98 LHAGGKFDD---NSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQ 151 + + N K++GG +G G + N LS+ E+ + + I +Q++ G + Sbjct: 121 ERTSSNYQNTNLNDPKLTGGKNGYGAKLTNVLSEYFEVETKYDNLIFKQLHYEGNTK 177 >UniRef50_Q9K2S8 GyrB protein (Fragment) n=2 Tax=Mycoplasma hominis RepID=Q9K2S8_MYCHO Length = 103 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 56/104 (53%), Gaps = 4/104 (3%) Query: 129 KLELVIQREGKIHRQIYEHG-VPQAPLAVTGETEK--TGTMVRFWPSLETFTNVTEFEYE 185 + E+ ++R+GK+H Q + +G +P PL V G + TGT ++F P F+++ Sbjct: 1 EFEVWVKRDGKLHYQQFRNGGIPVKPLEVIGNVSEVETGTTIKFHPDYTIM-EKENFDFD 59 Query: 186 ILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYL 229 + +++++LN G+ I + + F +EGG+ +V+ L Sbjct: 60 TIIDHSKQIAYLNKGLKITVENVEKNIIKVFCFEGGLIDYVKEL 103 >UniRef50_Q401L8 DNA gyrase subunit B (Fragment) n=1 Tax=Mycobacterium kansasii RepID=Q401L8_MYCKA Length = 109 Score = 95.1 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 37/84 (44%), Positives = 54/84 (64%), Gaps = 2/84 (2%) Query: 126 LSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYE 185 LS +LE+ I+R+G Q+YE P L T+KTGT VRFW F TE+++E Sbjct: 1 LSTRLEVEIKRDGYEWSQVYEKSEPMG-LKQGAPTKKTGTTVRFWADPNVF-ETTEYDFE 58 Query: 186 ILAKRLRELSFLNSGVSIRLRDKR 209 +A+RL+E++FLN G++I L D+R Sbjct: 59 TVARRLQEMAFLNKGLTINLTDQR 82 >UniRef50_A4YWI0 DNA gyrase subunit B GyrB n=1 Tax=Bradyrhizobium sp. ORS278 RepID=A4YWI0_BRASO Length = 118 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 7/103 (6%) Query: 119 GVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE------KTGTMVRFWPS 172 G+ VVNALS+ L++ + R+GK H + G +APL +TG+ + GT + F P Sbjct: 12 GLFVVNALSEWLQVRVWRDGKEHVMRFGRGRSEAPLRITGDAGIVDGAPRRGTEITFCPD 71 Query: 173 LETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDH 215 FT V F+ + + LR + GV++ L D+R + Sbjct: 72 ARVFTTV-GFDEARIEQSLRRMPVFKVGVTVTLSDQRSAESKT 113 >UniRef50_UPI0001698B4D DNA gyrase subunit B n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001698B4D Length = 143 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 39/106 (36%), Positives = 66/106 (62%) Query: 534 LYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKM 593 L+K+KKGKQEQY+KD+ ++ Y + AL+ + ++ A AP L+G ALE L Y + Sbjct: 11 LFKIKKGKQEQYLKDESDLNSYFLQTALENSAIYVTADAPPLSGSALEDLCQSYLVVKST 70 Query: 594 INRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELND 639 I+R+ RRY + +L++LIY L + + +++ + W+ L+ LN Sbjct: 71 IDRLSRRYDEELLEKLIYVRRLDASLVENQEAMDGWLADLLPMLNS 116 >UniRef50_B2G4Y3 GyrB protein (Fragment) n=1 Tax=Bacillus sp. AKG RepID=B2G4Y3_9BACI Length = 80 Score = 88.9 bits (219), Expect = 7e-16, Method: Composition-based stats. Identities = 40/80 (50%), Positives = 54/80 (67%), Gaps = 1/80 (1%) Query: 198 NSGVSIRLRDKR-DGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVAL 256 N + + + DKR ++ FHYEGGIK++VE+LN++K PIH Y KDGI VEV+L Sbjct: 1 NRNIKLTIEDKRGHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSL 60 Query: 257 QWNDGFQENIYCFTNNIPQR 276 Q+N+G+ NIY FTNNI Sbjct: 61 QYNEGYTNNIYSFTNNIHTY 80 >UniRef50_UPI0001909AAD DNA gyrase subunit B n=1 Tax=Rhizobium etli IE4771 RepID=UPI0001909AAD Length = 216 Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 76/175 (43%), Gaps = 6/175 (3%) Query: 570 ASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRW 629 S G+ L +++ + + +++ + RY +A++++ L +SD+ Sbjct: 8 GSGEVRTGQDLREVILDALRMRALLDNLHSRYNRAVVEQAAIAGALNAELVSDQARAQAL 67 Query: 630 VNALVSELNDKEQHGSQ-WKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYR 688 V+ + S L+ + + W+ D+ ++ + GV LD I + R Sbjct: 68 VSEVASRLDIIAEETERGWQGDLTSD-----GGLRLERMVRGVKEIVVLDMALIGSSDAR 122 Query: 689 RICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLG 743 I L +L+ + + + R E ++ LD + R+GL++QRYKGLG Sbjct: 123 HIDQLTSRLKEIYQTPPSLHRREGDIEISGPRALLDAIFASGRKGLTMQRYKGLG 177 >UniRef50_Q5FEK8 Putative uncharacterized protein n=1 Tax=Ehrlichia ruminantium str. Welgevonden RepID=Q5FEK8_EHRRW Length = 75 Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 23/58 (39%), Positives = 42/58 (72%) Query: 717 ASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAAD 774 +D +++ S++ +++QR+KGLGEMN +QLW+TT++P++R L++ + D AAD Sbjct: 18 CKLNFLVDNIIEFSKKDMTLQRFKGLGEMNTDQLWDTTLNPDTRTFLKIKISDCEAAD 75 >UniRef50_Q070G1 GyrB-like ATPase domain protein n=1 Tax=Crocodilepox virus RepID=Q070G1_CPRV Length = 1017 Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 98/612 (16%), Positives = 184/612 (30%), Gaps = 121/612 (19%) Query: 9 SIKVLKGLDAVRKRPGMYIGDTDDGT-------------GLHHMVFEVVDNAIDEALAGH 55 + ++ V P Y+G T T G + E V NAID L Sbjct: 15 EYRSMRDEAHVLANPSEYLGVTCTVTRGTIFNKRIRYHAGAAKLCDEAVSNAIDHCLITG 74 Query: 56 CKEIIVTIHADNSVSVQDDGRGIPTG--IHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSG 113 + V S+ V + R +P + E G ++ + G + + Sbjct: 75 SDAVNVD-MRGVSICVANRSR-VPVRGALDGEPGHVIPRALLRQMRTSGNYVTR--RSVS 130 Query: 114 GLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKT-GTMV---RF 169 G HG G+ +++ +++LEL + + E G + + + ++ GT RF Sbjct: 131 GRHGHGLKLIHLFAERLELDVSDGDLAYSYRREGGDVEESVLDSPLRDERLGTRFFRLRF 190 Query: 170 WPSLETF--------TNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGG 221 P + E+ L + + L+ L G++I R + Sbjct: 191 SPDPARLNAEREELAEGLREYVVSRLCEYVFYLAELGRGIAIHFNGDRLPYVAPW----- 245 Query: 222 IKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTH 281 F+ + K + T DG+GV + + N + Sbjct: 246 ---FLRSRHVTKRFSVTYVPDGRTRFDGLGVAYVSRERNSKGAL----VNGARVK----- 293 Query: 282 LAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLV 341 + + R + + + D R + + V+ F+SQ K + Sbjct: 294 ----KLQLMRVVADAIAET----------RPDLRRCHVSIFLLVECAGITFTSQEKVAVD 339 Query: 342 SSEVKSAVEQQMNELLAEYLLENPT------DAKIVVGKIIDAARAREAARRAREMTRRK 395 + + + L P+ A V + AARA + R RE R+ Sbjct: 340 GRF--EIPGRLFSAADLDPLSRPPSPQSATAAAAETVEADVAAARALGSPARVREKGSRE 397 Query: 396 GA-----------------LDLAGLPGKLADCQERDPALSELY--LVEGDSAGGSAKQGR 436 A A P E + LV + Sbjct: 398 RAGAGGSDGDEEEEDDDARDGDATAPVSGEAAATTAERAGERFELLVIREPKNVPLLSAA 457 Query: 437 NRKNQAI---LPLKGKILNVEKARFDKML--SSQEVATLITALGCGIGRDEYNPDKLRYH 491 R+ A+ LP + D+ + ++ + +G + + H Sbjct: 458 GRRVYAVTGDLP---------DSTVDRAAARENADLRAIARVMGVDLAGRNQHSTLC--H 506 Query: 492 SIIIMTDADVDGSHIRTLLLTFF---YRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKD 548 SI++ T H LLL P ++ V +A+ P + K +Y+ Sbjct: 507 SIVVFT-------HDAPLLLGLLKAVEAFWPTML--ARVCVAELPKLRCCK----RYLYA 553 Query: 549 DEAMDQYQISIA 560 D+ + + Sbjct: 554 DDEPESHADHEG 565 >UniRef50_D0L8E8 DNA topoisomerase n=22 Tax=cellular organisms RepID=D0L8E8_GORB4 Length = 55 Score = 78.1 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 32/50 (64%), Positives = 39/50 (78%), Gaps = 1/50 (2%) Query: 5 YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAG 54 Y + SI + +GLD VRKRPGMYIG T GLHHM++EVVDN +DEA+AG Sbjct: 7 YGAESIAIREGLDVVRKRPGMYIGST-SSRGLHHMLWEVVDNGVDEAMAG 55 >UniRef50_Q0P7Q0 DNA gyrase subunit B (Fragment) n=12 Tax=Phyllobacteriaceae RepID=Q0P7Q0_9RHIZ Length = 164 Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 68/165 (41%), Gaps = 1/165 (0%) Query: 536 KVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMIN 595 KV +GK QYIKD+ A +++ I L+ A+L + S AG+ L + + A +++IN Sbjct: 1 KVTRGKSSQYIKDEGAFEEFLIGSGLEEASL-SLGSGEVRAGQDLRSAIDDALAVRQLIN 59 Query: 596 RMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNA 655 + RY + ++++ L L D + + L+ + + + + Sbjct: 60 GLHTRYNRGVVEQAAIAGALNPDVLGDLGRANAMADRVAKRLDIIAEDTERGWTGRMSTS 119 Query: 656 EQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGL 700 + + + V LD I + R++ +L + Sbjct: 120 NEGVGGYVFERTVRSVKEFAQLDLGLINSADARQLDRYAPRLTEV 164 >UniRef50_P23992 DNA topoisomerase small subunit n=1 Tax=Enterobacteria phage T4 RepID=TOPS_BPT4 Length = 160 Score = 68.5 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 2/76 (2%) Query: 480 RDEYNPDKLRYHSIIIMTDADVDG-SHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 R + Y ++ IMTDAD DG I LL FF PE+ E+G + + P+ + Sbjct: 23 RRSIKSSSMNYANVAIMTDADHDGLGSIYPSLLGFF-SNWPELFEQGRIRFVKTPVIIAQ 81 Query: 539 KGKQEQYIKDDEAMDQ 554 GK++++ + Sbjct: 82 VGKKQEWFYTVAEYES 97 >UniRef50_A9DKM1 DNA gyrase subunit B n=1 Tax=Kordia algicida OT-1 RepID=A9DKM1_9FLAO Length = 208 Score = 68.5 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 77/181 (42%), Gaps = 11/181 (6%) Query: 14 KGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQD 73 + + +R RP Y + + L + E+V AID+ I V ++ D SV+ Sbjct: 17 EPYEHIRMRPQWYFTELFEEKKLDSLPLEIVKYAIDQNS----TIITVNLYTD-IFSVEF 71 Query: 74 DGRGIPTGIHP--EEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHG-VGVSVVNALSQKL 130 + +G+ H E ++ AE ++ + + + GL+G VG+ +NA S+ Sbjct: 72 N-KGMSLETHHRYEGDITKAEAVLLEI-SNYVSFRKKDDLQSGLNGSVGLIRINAASEWC 129 Query: 131 ELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILAKR 190 +L+ G+ ++ G + + +K T + P F ++ + + L ++ Sbjct: 130 KLLTYSNGQKGEFHFKEGETETRTICGSDEKKNYTKITVKPDATIFPDL-KINPKTLQEK 188 Query: 191 L 191 + Sbjct: 189 I 189 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0AES7 DNA gyrase subunit B n=740 Tax=root RepID=GYRB_E... 1012 0.0 UniRef50_O51859 DNA gyrase subunit B n=208 Tax=Bacteria RepID=GY... 949 0.0 UniRef50_B6IVV7 DNA gyrase subunit B n=192 Tax=cellular organism... 864 0.0 UniRef50_Q89B37 DNA gyrase subunit B n=30 Tax=Proteobacteria Rep... 853 0.0 UniRef50_B2UCF3 DNA gyrase subunit B n=47 Tax=Proteobacteria Rep... 839 0.0 UniRef50_D0LFL2 DNA gyrase subunit B n=1 Tax=Haliangium ochraceu... 837 0.0 UniRef50_O67137 DNA gyrase subunit B n=13 Tax=cellular organisms... 837 0.0 UniRef50_A3EQC0 DNA gyrase subunit B n=7 Tax=Bacteria RepID=A3EQ... 835 0.0 UniRef50_C1DUC4 DNA gyrase subunit B n=5 Tax=Bacteria RepID=C1DU... 830 0.0 UniRef50_B8GXQ0 DNA gyrase subunit B n=17 Tax=cellular organisms... 829 0.0 UniRef50_A1TI33 DNA gyrase subunit B n=16 Tax=Burkholderiales Re... 824 0.0 UniRef50_Q9Z8R3 DNA gyrase subunit B n=80 Tax=cellular organisms... 820 0.0 UniRef50_UPI0001C311B1 DNA gyrase, B subunit n=1 Tax=Conexibacte... 816 0.0 UniRef50_B1ZTK2 DNA gyrase subunit B n=194 Tax=cellular organism... 812 0.0 UniRef50_Q1RHT8 DNA gyrase subunit B n=702 Tax=Proteobacteria Re... 805 0.0 UniRef50_Q1MQ88 DNA gyrase subunit B n=6 Tax=Bacteria RepID=Q1MQ... 800 0.0 UniRef50_B2URM5 DNA gyrase subunit B n=25 Tax=Bacteria RepID=B2U... 796 0.0 UniRef50_Q2GD49 DNA gyrase subunit B n=9 Tax=cellular organisms ... 795 0.0 UniRef50_O33367 DNA gyrase subunit B n=6 Tax=Bacteria RepID=GYRB... 794 0.0 UniRef50_B5YGU1 DNA gyrase subunit B n=9 Tax=Bacteria RepID=B5YG... 784 0.0 UniRef50_A6DH73 DNA gyrase subunit B n=7 Tax=cellular organisms ... 777 0.0 UniRef50_C3XDF7 DNA gyrase subunit B n=5 Tax=Campylobacterales R... 766 0.0 UniRef50_D2R8B1 DNA gyrase, B subunit n=80 Tax=Bacteria RepID=D2... 762 0.0 UniRef50_A6G5S5 DNA gyrase subunit B n=11 Tax=Bacteria RepID=A6G... 757 0.0 UniRef50_C5B4P3 DNA gyrase, subunit B n=1 Tax=Methylobacterium e... 750 0.0 UniRef50_D0RQH0 DNA gyrase subunit B n=2 Tax=Bacteria RepID=D0RQ... 742 0.0 UniRef50_O50627 DNA gyrase subunit B n=82 Tax=cellular organisms... 739 0.0 UniRef50_UPI00016C54E0 DNA gyrase subunit B n=1 Tax=Gemmata obsc... 733 0.0 UniRef50_B8FXX0 DNA gyrase subunit B n=70 Tax=Bacteria RepID=B8F... 726 0.0 UniRef50_Q9ZLX3 DNA gyrase subunit B n=50 Tax=Epsilonproteobacte... 720 0.0 UniRef50_Q9X3Y6 DNA gyrase subunit B n=840 Tax=cellular organism... 699 0.0 UniRef50_Q6GKU0 DNA gyrase subunit B n=143 Tax=cellular organism... 690 0.0 UniRef50_Q2FUD6 DNA gyrase subunit B n=1 Tax=Methanospirillum hu... 688 0.0 UniRef50_Q9A0L0 DNA gyrase subunit B n=56 Tax=cellular organisms... 683 0.0 UniRef50_Q04WF3 DNA gyrase subunit B n=20 Tax=Bacteria RepID=Q04... 676 0.0 UniRef50_A5TY73 DNA gyrase subunit B n=542 Tax=Bacteria RepID=GY... 672 0.0 UniRef50_P21558 DNA gyrase subunit B n=61 Tax=cellular organisms... 669 0.0 UniRef50_C7M118 DNA gyrase subunit B n=1 Tax=Acidimicrobium ferr... 666 0.0 UniRef50_C7QFM2 DNA gyrase subunit B n=8 Tax=Bacteria RepID=C7QF... 662 0.0 UniRef50_Q94BZ7 DNA gyrase subunit B, mitochondrial n=83 Tax=cel... 660 0.0 UniRef50_B6GDL9 DNA gyrase subunit B n=2 Tax=Collinsella RepID=B... 654 0.0 UniRef50_P50074 DNA gyrase subunit B, novobiocin-resistant n=117... 650 0.0 UniRef50_D0J983 DNA gyrase subunit B n=22 Tax=cellular organisms... 649 0.0 UniRef50_P34031 DNA gyrase subunit B n=54 Tax=Bacteria RepID=GYR... 647 0.0 UniRef50_Q1V1K8 DNA topoisomerase (ATP-hydrolyzing) chain B (DNA... 644 0.0 UniRef50_B6BRC2 DNA gyrase subunit B n=1 Tax=Candidatus Pelagiba... 639 0.0 UniRef50_D0MI55 DNA topoisomerase (ATP-hydrolyzing) n=8 Tax=Bact... 639 0.0 UniRef50_A9KS52 DNA topoisomerase (ATP-hydrolyzing) n=33 Tax=Bac... 638 0.0 UniRef50_P43053 DNA gyrase subunit B n=78 Tax=Bacteria RepID=GYR... 635 e-180 UniRef50_P66938 DNA topoisomerase 4 subunit B n=158 Tax=Bacteria... 632 e-179 UniRef50_B7G298 Predicted protein n=3 Tax=cellular organisms Rep... 631 e-179 UniRef50_Q2NJM1 DNA gyrase subunit B n=5 Tax=Mollicutes RepID=Q2... 628 e-178 UniRef50_UPI0001A7B046 ATP binding / DNA binding / DNA topoisome... 628 e-178 UniRef50_B3TAI0 Putative DNA gyrase B n=1 Tax=uncultured marine ... 616 e-174 UniRef50_Q10XN8 DNA gyrase subunit B n=6 Tax=Bacteria RepID=Q10X... 612 e-173 UniRef50_D1BTM8 DNA topoisomerase (ATP-hydrolyzing) n=8 Tax=Acti... 612 e-173 UniRef50_C4G1I8 Putative uncharacterized protein n=1 Tax=Abiotro... 611 e-173 UniRef50_Q2S2H3 Type II DNA topoisomerase, B subunit n=3 Tax=Bac... 608 e-172 UniRef50_D2NTW6 Type IIA topoisomerase, B subunit n=10 Tax=Actin... 604 e-171 UniRef50_A0Q197 DNA topoisomerase IV subunit B n=34 Tax=Clostrid... 602 e-170 UniRef50_C6PY14 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Clos... 598 e-169 UniRef50_A8LVU4 DNA gyrase subunit B domain protein n=37 Tax=Act... 598 e-169 UniRef50_P50028 DNA gyrase subunit B n=331 Tax=cellular organism... 597 e-169 UniRef50_Q83G36 DNA gyrase subunit B-like protein n=2 Tax=Trophe... 593 e-167 UniRef50_A1SCM1 DNA gyrase subunit B n=28 Tax=Actinomycetales Re... 589 e-166 UniRef50_Q59526 DNA topoisomerase 4 subunit B n=9 Tax=Bacteria R... 588 e-166 UniRef50_B9ZQ26 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Thio... 586 e-165 UniRef50_A0LUT9 DNA topoisomerase (ATP-hydrolyzing) n=15 Tax=Act... 584 e-165 UniRef50_P78016 DNA topoisomerase 4 subunit B n=3 Tax=Mycoplasma... 574 e-162 UniRef50_P94281 DNA gyrase subunit B n=211 Tax=cellular organism... 572 e-161 UniRef50_Q98RQ4 DNA gyrase subunit B n=13 Tax=cellular organisms... 566 e-159 UniRef50_D0WQJ3 Putative DNA gyrase subunit B n=1 Tax=Actinomyce... 566 e-159 UniRef50_B3LD45 DNA gyrase subunit b, putative n=1 Tax=Plasmodiu... 563 e-159 UniRef50_C0W359 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Acti... 559 e-157 UniRef50_P43703 DNA topoisomerase 4 subunit B n=456 Tax=Bacteria... 556 e-156 UniRef50_D1C5K6 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Spha... 555 e-156 UniRef50_Q4AAR9 Topoisomerase IV subunit B n=9 Tax=Mycoplasma Re... 551 e-155 UniRef50_D0RNK2 DNA topoisomerase IV, B subunit n=1 Tax=alpha pr... 527 e-148 UniRef50_Q9FAX1 DNA gyrase subunit B (Fragment) n=60 Tax=Bacteri... 526 e-147 UniRef50_A7I8U0 DNA gyrase subunit B n=1 Tax=Candidatus Methanor... 526 e-147 UniRef50_Q02880 DNA topoisomerase 2-beta n=175 Tax=Eukaryota Rep... 525 e-147 UniRef50_P08096 DNA topoisomerase 2 n=1 Tax=Schizosaccharomyces ... 523 e-146 UniRef50_P11388 DNA topoisomerase 2-alpha n=47 Tax=Eukaryota Rep... 522 e-146 UniRef50_UPI0000DA3D74 PREDICTED: similar to topoisomerase (DNA)... 521 e-146 UniRef50_B3R5I8 DNA topoisomerase IV, subunit B n=15 Tax=Proteob... 520 e-146 UniRef50_Q5KSK9 DNA topoisomerase 2 n=5 Tax=Basidiomycota RepID=... 519 e-145 UniRef50_C1E5N4 DNA topoisomerase 2 n=1 Tax=Micromonas sp. RCC29... 518 e-145 UniRef50_Q9FAX2 DNA gyrase subunit B (Fragment) n=166 Tax=root R... 518 e-145 UniRef50_O24308 DNA topoisomerase 2 n=3 Tax=fabids RepID=TOP2_PEA 518 e-145 UniRef50_Q8SS63 DNA topoisomerase 2 n=1 Tax=Encephalitozoon cuni... 516 e-144 UniRef50_B6K4K4 DNA topoisomerase 2 n=1 Tax=Schizosaccharomyces ... 515 e-144 UniRef50_UPI0000DB6EE1 PREDICTED: similar to DNA topoisomerase 2... 513 e-144 UniRef50_Q9Y8G8 DNA topoisomerase 2 n=79 Tax=cellular organisms ... 511 e-143 UniRef50_D1ZCL6 DNA topoisomerase 2 n=6 Tax=Sordariomyceta RepID... 506 e-141 UniRef50_B3H4G2 DNA topoisomerase 2 n=14 Tax=Magnoliophyta RepID... 505 e-141 UniRef50_P30182 DNA topoisomerase 2 n=6 Tax=Eukaryota RepID=TOP2... 505 e-141 UniRef50_B9PK68 DNA topoisomerase 2 n=3 Tax=Toxoplasma gondii Re... 498 e-139 UniRef50_A8PTE9 DNA topoisomerase 2 n=1 Tax=Malassezia globosa C... 497 e-139 UniRef50_A5E7X7 DNA topoisomerase 2 n=4 Tax=Saccharomycetaceae R... 496 e-138 UniRef50_A7ANB1 DNA topoisomerase 2 n=3 Tax=Piroplasmida RepID=A... 494 e-138 UniRef50_Q6PUA3 DNA topoisomerase 2 n=4 Tax=Tetrahymena thermoph... 493 e-138 UniRef50_C5KAQ6 DNA topoisomerase 2 n=1 Tax=Perkinsus marinus AT... 492 e-137 UniRef50_B0EP10 DNA topoisomerase 2 n=3 Tax=Entamoeba RepID=B0EP... 491 e-137 UniRef50_A8S818 Putative uncharacterized protein n=6 Tax=Bacteri... 491 e-137 UniRef50_Q18GY2 DNA gyrase subunit B n=10 Tax=cellular organisms... 488 e-136 UniRef50_P77966 Ssp gyrB intein n=45 Tax=cellular organisms RepI... 483 e-134 UniRef50_Q7YZS4 DNA topoisomerase 2 n=1 Tax=Physarum polycephalu... 479 e-133 UniRef50_Q55BP5 Probable DNA topoisomerase 2 n=1 Tax=Dictyosteli... 479 e-133 UniRef50_B7G2K9 DNA topoisomerase 2 (Fragment) n=1 Tax=Phaeodact... 479 e-133 UniRef50_P41001 DNA topoisomerase 2 n=10 Tax=Eukaryota RepID=TOP... 476 e-132 UniRef50_B7XIW3 DNA topoisomerase 2 n=1 Tax=Enterocytozoon biene... 476 e-132 UniRef50_A7TEE2 DNA topoisomerase 2 n=1 Tax=Vanderwaltozyma poly... 476 e-132 UniRef50_Q9X3Y5 DNA gyrase subunit B (Fragment) n=740 Tax=cellul... 476 e-132 UniRef50_D2UZM0 DNA topoisomerase II n=1 Tax=Naegleria gruberi R... 476 e-132 UniRef50_A8Q6X4 DNA topoisomerase 2 n=1 Tax=Brugia malayi RepID=... 475 e-132 UniRef50_P06786 DNA topoisomerase 2 n=27 Tax=Fungi/Metazoa group... 474 e-132 UniRef50_A3DC64 DNA topoisomerase (ATP-hydrolyzing) n=11 Tax=Bac... 470 e-131 UniRef50_D2V5K5 DNA topoisomerase II n=1 Tax=Naegleria gruberi R... 469 e-130 UniRef50_Q4UIX0 DNA topoisomerase II, putative n=2 Tax=Theileria... 466 e-129 UniRef50_P90520 DNA topoisomerase 2, mitochondrial n=1 Tax=Dicty... 466 e-129 UniRef50_A4HGT2 DNA topoisomerase 2 n=11 Tax=Trypanosomatidae Re... 466 e-129 UniRef50_A0C0L0 DNA topoisomerase 2 n=3 Tax=Paramecium tetraurel... 465 e-129 UniRef50_A6TSS9 DNA gyrase, subunit B domain protein n=1 Tax=Alk... 464 e-129 UniRef50_Q44272 DNA gyrase subunit B (Fragment) n=2942 Tax=cellu... 458 e-127 UniRef50_Q1NK64 DNA topoisomerase II:ATP-binding region, ATPase-... 456 e-126 UniRef50_Q9HGH7 DNA topoisomerase 2 (Fragment) n=1 Tax=Pichia ku... 455 e-126 UniRef50_C4R475 DNA topoisomerase 2 n=1 Tax=Pichia pastoris GS11... 453 e-125 UniRef50_A7ASL8 DNA gyrase subunit B, putative n=1 Tax=Babesia b... 448 e-124 UniRef50_Q6RCM1 DNA topoisomerase 2 n=2 Tax=Trichomonas vaginali... 448 e-124 UniRef50_B1ZME3 DNA topoisomerase type IIA subunit B region 2 do... 447 e-124 UniRef50_B8C981 DNA topoisomerase 2 (Fragment) n=1 Tax=Thalassio... 447 e-124 UniRef50_D0MV61 DNA topoisomerase 2 n=2 Tax=Eukaryota RepID=D0MV... 446 e-123 UniRef50_UPI00016B23A5 DNA gyrase subunit B n=1 Tax=candidate di... 443 e-122 UniRef50_O41065 A583L protein n=7 Tax=Chlorovirus RepID=O41065_P... 443 e-122 UniRef50_A5K8Q8 DNA gyrase subunit b, putative n=1 Tax=Plasmodiu... 435 e-120 UniRef50_D2QHC5 DNA topoisomerase type IIA subunit B region 2 do... 435 e-120 UniRef50_Q5UQE6 DNA topoisomerase 2 n=3 Tax=root RepID=TOP2_MIMIV 432 e-119 UniRef50_Q4RIW2 DNA topoisomerase 2 (Fragment) n=1 Tax=Tetraodon... 429 e-118 UniRef50_B2RL68 DNA topoisomerase IV B subunit n=60 Tax=Bacteria... 428 e-118 UniRef50_Q8GD47 DNA gyrase subunit B (Fragment) n=21 Tax=Bacteri... 425 e-117 UniRef50_B1BBK7 DNA topoisomerase n=5 Tax=root RepID=B1BBK7_CLOBO 424 e-117 UniRef50_B2ZYK3 Type IIA topoisomerase n=1 Tax=Ralstonia phage R... 424 e-116 UniRef50_C7PPD8 DNA topoisomerase type IIA subunit B region 2 do... 423 e-116 UniRef50_C7U0P4 DNA topoisomerase II n=2 Tax=unclassified Phycod... 420 e-115 UniRef50_Q59189 DNA topoisomerase 4 subunit B n=27 Tax=Bacteria ... 418 e-115 UniRef50_A1EGM8 DNA gyrase subunit B (Fragment) n=1 Tax=uncultur... 418 e-115 UniRef50_Q7RHG3 DNA topoisomerase II, putative n=3 Tax=Plasmodiu... 416 e-114 UniRef50_C9S837 DNA topoisomerase 2 n=2 Tax=Sordariomycetes RepI... 416 e-114 UniRef50_D0NA12 DNA topoisomerase 2 n=1 Tax=Phytophthora infesta... 410 e-112 UniRef50_C8XUB6 Topoisomerase II large subunit n=1 Tax=Shigella ... 410 e-112 UniRef50_C6LX36 DNA topoisomerase 2 n=3 Tax=Giardia intestinalis... 409 e-112 UniRef50_B9U3G6 DNA topoisomerase 2 (Fragment) n=1 Tax=Pleurotus... 408 e-112 UniRef50_P27570 DNA topoisomerase 2 n=15 Tax=Trypanosomatidae Re... 399 e-109 UniRef50_Q2JC55 DNA topoisomerase II n=4 Tax=Actinomycetales Rep... 398 e-109 UniRef50_C9DGI8 Gp60plus39 DNA topoisomerase subunit n=1 Tax=Def... 396 e-108 UniRef50_Q8HFR9 DNA topoisomerase 2 n=1 Tax=Bodo saltans RepID=Q... 389 e-106 UniRef50_P34534 Putative DNA topoisomerase 2, mitochondrial n=5 ... 383 e-104 UniRef50_D2RAT5 DNA gyrase, B subunit, C-terminal domain protein... 378 e-103 UniRef50_A6N697 DNA gyrase subunit B (Fragment) n=2 Tax=uncultur... 372 e-101 UniRef50_D2QB32 GyrB2 DNA gyrase subunit B n=8 Tax=Bifidobacteri... 370 e-100 UniRef50_UPI0001924D0A PREDICTED: similar to DNA topoisomerase 2... 368 e-100 UniRef50_UPI0001976865 DNA topoisomerase (ATP-hydrolyzing) n=1 T... 367 1e-99 UniRef50_A7XYG8 GyrB (Fragment) n=6 Tax=Chlamydia trachomatis Re... 365 4e-99 UniRef50_Q6UGM9 DNA gyrase B subunit (Fragment) n=1 Tax=Fusobact... 364 6e-99 UniRef50_B6XTR9 Putative uncharacterized protein n=2 Tax=Bifidob... 364 6e-99 UniRef50_Q9QSK1 DNA topoisomerase 2 n=1 Tax=Invertebrate iridesc... 361 6e-98 UniRef50_A3Q8K7 DNA topoisomerase (ATP-hydrolyzing) n=6 Tax=Myco... 359 3e-97 UniRef50_B6EUG7 DNA gyrase subunit B (Fragment) n=6 Tax=Actinomy... 350 2e-94 UniRef50_B4V0A2 DNA gyrase subunit B n=1 Tax=Streptomyces sp. Mg... 345 6e-93 UniRef50_Q56C43 Gp60plus39 DNA topoisomerase subunit n=3 Tax=T4-... 344 6e-93 UniRef50_C0DAN0 Putative uncharacterized protein (Fragment) n=1 ... 343 1e-92 UniRef50_Q76Z86 Topoisomerase II large subunit n=1 Tax=Aeromonas... 336 2e-90 UniRef50_B5H7D6 DNA gyrase subunit B n=2 Tax=Streptomyces RepID=... 332 3e-89 UniRef50_C3IT50 DNA gyrase subunit B n=3 Tax=Bacillus thuringien... 332 5e-89 UniRef50_D2XAH7 DNA topoisomerase II n=1 Tax=Marseillevirus RepI... 327 9e-88 UniRef50_D2TEU4 Putative DNA topoisomerase n=2 Tax=dsDNA viruses... 323 2e-86 UniRef50_Q196X4 DNA topoisomerase 2 n=1 Tax=Invertebrate iridesc... 322 4e-86 UniRef50_Q8I528 Term=DNA gyrase subunit B;evidence=inferred from... 317 9e-85 UniRef50_Q04PE7 DNA topoisomerase (ATP-hydrolyzing), subunit B n... 316 3e-84 UniRef50_Q5CQG8 DNA topoisomerase 2 n=4 Tax=Apicomplexa RepID=Q5... 315 5e-84 UniRef50_C9E3K9 DNA gyrase subunit B (Fragment) n=1 Tax=Rhodococ... 300 1e-79 UniRef50_C1SL26 DNA gyrase subunit B n=1 Tax=Denitrovibrio aceti... 286 2e-75 UniRef50_P09176 DNA topoisomerase large subunit n=13 Tax=T4-like... 283 2e-74 UniRef50_Q00942 DNA topoisomerase 2 n=7 Tax=African swine fever ... 273 2e-71 UniRef50_B1N7R8 Gyrase b (Fragment) n=1 Tax=uncultured bacterium... 273 2e-71 UniRef50_B3SFQ4 Putative uncharacterized protein (Fragment) n=1 ... 271 8e-71 UniRef50_B4YQA0 DNA gyrase subunit B (Fragment) n=1 Tax=Lactobac... 265 5e-69 UniRef50_A0BK44 Chromosome undetermined scaffold_111, whole geno... 263 2e-68 UniRef50_Q0QCK3 ParE (Fragment) n=163 Tax=cellular organisms Rep... 261 8e-68 UniRef50_A3SXB5 DNA topoisomerase IV subunit B n=1 Tax=Sulfitoba... 251 1e-64 UniRef50_A8NKQ4 Putative uncharacterized protein n=1 Tax=Coprino... 242 3e-62 UniRef50_A7K5X7 DNA gyrase subunit B n=5 Tax=Gammaproteobacteria... 237 1e-60 UniRef50_Q1CZR7 DNA gyrase, B subunit, truncated n=1 Tax=Myxococ... 230 2e-58 UniRef50_UPI00016C4A69 DNA gyrase subunit B n=2 Tax=Gemmata obsc... 227 1e-57 UniRef50_C0F8C8 DNA gyrase, B subunit (Fragment) n=1 Tax=Wolbach... 225 5e-57 UniRef50_D2J2Q7 DNA gyrase subunit B (Fragment) n=7 Tax=Coryneba... 223 3e-56 UniRef50_Q2SFQ7 Type IIA topoisomerase (DNA gyrase/topo II, topo... 222 5e-56 UniRef50_C1ZHM4 Type IIA topoisomerase (DNA gyrase/topo II, topo... 216 2e-54 UniRef50_A6N6C7 DNA gyrase subunit B (Fragment) n=1 Tax=uncultur... 215 8e-54 UniRef50_B9PF30 Predicted protein n=6 Tax=cellular organisms Rep... 214 9e-54 UniRef50_UPI0001C4799C UPI0001C4799C related cluster n=1 Tax=unk... 210 2e-52 UniRef50_B1PJM5 DNA gyrase subunit B (Fragment) n=1 Tax=Micromon... 209 3e-52 UniRef50_Q6Y3A9 Gyrase B (Fragment) n=1 Tax=Pelobacter acidigall... 206 2e-51 UniRef50_C5Z2Y6 Putative uncharacterized protein Sb10g016438 (Fr... 205 5e-51 UniRef50_A9CRV4 DNA gyrase subunit B (Fragment) n=2 Tax=Bradyrhi... 194 9e-48 UniRef50_Q27537 Chromosome instability 4 n=3 Tax=Chromadorea Rep... 193 3e-47 UniRef50_B0YNR7 DNA gyrase subunit B (Fragment) n=7 Tax=Gammapro... 191 7e-47 UniRef50_A7C3L4 Topoisomerase B subunit n=1 Tax=Beggiatoa sp. PS... 191 9e-47 UniRef50_D1AIT2 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Seba... 188 9e-46 UniRef50_B9XLD1 Type IIA topoisomerase (DNA gyrase/topo II topoi... 182 6e-44 UniRef50_A8V367 Gyrase B (Fragment) n=1 Tax=Hydrogenivirga sp. 1... 181 1e-43 UniRef50_C0SNC2 DNA gyrase subunit B (Fragment) n=87 Tax=Lactoba... 173 4e-41 UniRef50_UPI0001788AA3 transcriptional regulator, ArsR family n=... 169 6e-40 UniRef50_UPI0001698B4B DNA gyrase, B subunit n=1 Tax=Endoriftia ... 165 5e-39 UniRef50_Q9FYE9 DNA gyrase subunit B-like protein n=3 Tax=Arabid... 164 1e-38 UniRef50_C7UEA1 Predicted protein n=22 Tax=Enterococcus faecalis... 158 7e-37 UniRef50_Q070G1 GyrB-like ATPase domain protein n=1 Tax=Crocodil... 157 1e-36 UniRef50_C3RSA4 DNA gyrase subunit B (Fragment) n=3 Tax=Lactobac... 157 2e-36 UniRef50_C7P9T7 Type IIA topoisomerase (DNA gyrase/topo II topoi... 154 1e-35 UniRef50_Q6Y3B0 Gyrase B (Fragment) n=1 Tax=Geobacter pelophilus... 154 1e-35 UniRef50_Q44273 DNA gyrase subunit B (Fragments) n=5 Tax=Acineto... 149 4e-34 UniRef50_Q2B8E8 DNA gyrase, B subunit n=1 Tax=Bacillus sp. NRRL ... 141 1e-31 UniRef50_UPI0001908742 DNA topoisomerase IV subunit B n=1 Tax=Rh... 136 3e-30 UniRef50_D2PP74 GCN5-related N-acetyltransferase n=1 Tax=Kribbel... 134 1e-29 UniRef50_UPI0000D546F8 DNA gyrase, B subunit n=1 Tax=Psychroflex... 129 3e-28 UniRef50_A0MYL3 DNA gyrase B (Fragment) n=14 Tax=Streptomyces Re... 129 5e-28 UniRef50_A5M9T1 DNA gyrase subunit B n=2 Tax=Streptococcus pneum... 127 1e-27 UniRef50_Q9F8M6 DNA gyrase subunit B (Fragment) n=1 Tax=Carboxyd... 126 5e-27 UniRef50_A9ZPQ0 DNA gyrase subunit B (Fragment) n=5 Tax=Coryneba... 122 6e-26 UniRef50_Q23CP4 DNA topoisomerase 2 n=3 Tax=Tetrahymena thermoph... 121 9e-26 UniRef50_A6G3Y8 Type IIA topoisomerase (DNA gyrase/topo II, topo... 121 1e-25 UniRef50_Q7UUI4 DNA gyrase subunit B n=1 Tax=Rhodopirellula balt... 119 4e-25 UniRef50_UPI00016B21F7 DNA gyrase subunit B n=1 Tax=candidate di... 118 9e-25 UniRef50_Q6E0M3 GyrB (Fragment) n=1 Tax=Bacillus thuringiensis R... 114 2e-23 UniRef50_B4V6F8 Putative uncharacterized protein n=3 Tax=Actinom... 113 3e-23 UniRef50_A0BK45 Chromosome undetermined scaffold_111, whole geno... 112 5e-23 UniRef50_C8NCI6 DNA gyrase subunit B n=1 Tax=Cardiobacterium hom... 106 4e-21 UniRef50_B1PL25 DNA gyrase subunit B (Fragment) n=79 Tax=Bacteri... 104 2e-20 UniRef50_UPI0000382E10 COG0187: Type IIA topoisomerase (DNA gyra... 102 8e-20 UniRef50_A7T4X2 Predicted protein n=1 Tax=Nematostella vectensis... 99 5e-19 UniRef50_A9AY53 Putative uncharacterized protein n=1 Tax=Herpeto... 98 2e-18 UniRef50_Q401L8 DNA gyrase subunit B (Fragment) n=1 Tax=Mycobact... 96 8e-18 UniRef50_A9DKM1 DNA gyrase subunit B n=1 Tax=Kordia algicida OT-... 94 1e-17 UniRef50_Q9K2S8 GyrB protein (Fragment) n=2 Tax=Mycoplasma homin... 94 2e-17 UniRef50_D1S521 Type IIA topoisomerase (DNA gyrase/topo II topoi... 94 2e-17 UniRef50_B9ZDG0 DNA topoisomerase VI, B subunit n=1 Tax=Natrialb... 93 6e-17 UniRef50_Q070G7 GyrB-like ATPase domain protein n=1 Tax=Crocodil... 92 8e-17 UniRef50_D1Y3T2 Mismatch repair protein MutL n=1 Tax=Pyramidobac... 91 1e-16 UniRef50_B0C128 Putative uncharacterized protein n=1 Tax=Acaryoc... 91 2e-16 UniRef50_Q2GFV4 DNA mismatch repair protein mutL n=9 Tax=Alphapr... 91 2e-16 Sequences not found previously or not previously below threshold: >UniRef50_P0AES7 DNA gyrase subunit B n=740 Tax=root RepID=GYRB_ECO57 Length = 804 Score = 1012 bits (2617), Expect = 0.0, Method: Composition-based stats. Identities = 804/804 (100%), Positives = 804/804 (100%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII Sbjct: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 Query: 61 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV Sbjct: 61 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVT 180 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVT Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVT 180 Query: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNI 240 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNI Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNI 240 Query: 241 FYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKE 300 FYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKE Sbjct: 241 FYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKE 300 Query: 301 GYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEY 360 GYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEY Sbjct: 301 GYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEY 360 Query: 361 LLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSEL 420 LLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSEL Sbjct: 361 LLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSEL 420 Query: 421 YLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR 480 YLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR Sbjct: 421 YLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR 480 Query: 481 DEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKG 540 DEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKG Sbjct: 481 DEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKG 540 Query: 541 KQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERR 600 KQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERR Sbjct: 541 KQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERR 600 Query: 601 YPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLF 660 YPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLF Sbjct: 601 YPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLF 660 Query: 661 EPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFE 720 EPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFE Sbjct: 661 EPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFE 720 Query: 721 QALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTL 780 QALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTL Sbjct: 721 QALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTL 780 Query: 781 MGDAVEPRRAFIEENALKAANIDI 804 MGDAVEPRRAFIEENALKAANIDI Sbjct: 781 MGDAVEPRRAFIEENALKAANIDI 804 >UniRef50_O51859 DNA gyrase subunit B n=208 Tax=Bacteria RepID=GYRB_VIBPA Length = 805 Score = 949 bits (2452), Expect = 0.0, Method: Composition-based stats. Identities = 623/806 (77%), Positives = 703/806 (87%), Gaps = 3/806 (0%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 MS +YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDN+IDEALAGHCK+I+ Sbjct: 1 MSENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIV 60 Query: 61 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 VTIH DNSVSV DDGRGIPT +HPEE VSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV Sbjct: 61 VTIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVT 180 SVVNALS+K+ L I R G IH Q Y HG P+APLAV G+T+KTGT +RFWPS ETF+N T Sbjct: 121 SVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDTDKTGTQIRFWPSAETFSN-T 179 Query: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRD-GKEDHFHYEGGIKAFVEYLNKNKTPIHPN 239 EF Y+ILAKRLRELSFLNSGVSI+L D+R+ K+DHF YEGGI+AFV++LN NKTPI Sbjct: 180 EFHYDILAKRLRELSFLNSGVSIKLIDEREADKQDHFMYEGGIQAFVQHLNTNKTPIIEK 239 Query: 240 IFYFSTE-KDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 IF+F E +DGI VEVA+QWNDGFQENI+CFTNNIPQRDGGTHLAGFRAA+TRTLN++MD Sbjct: 240 IFHFDLEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAALTRTLNSFMD 299 Query: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 KEG+SKKAK + +GDDAREGL AVVSVKVPDPKFSSQTKDKLVSSEVKSAVE M E L+ Sbjct: 300 KEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLS 359 Query: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 E+L+ENP++AK+V KIIDAARAREAAR+AREMTRRKGALDLAGLPGKLADCQE+DPALS Sbjct: 360 EFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 419 Query: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 ELY+VEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI Sbjct: 420 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479 Query: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 GRDEYNPDKLRYH+IIIMTDADVDGSHIRTLLLTFFYRQMPE++ERG+VYIAQPPLYKVK Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPPLYKVK 539 Query: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598 KGKQEQYIKD+EAM+QYQ+S+ALD A+LH NA APALAGEALEKLV +YNA K+ +RM Sbjct: 540 KGKQEQYIKDEEAMNQYQVSLALDNASLHVNAEAPALAGEALEKLVQQYNAGIKLADRMS 599 Query: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658 RRYP+A++ ELIY LT D V W LV +LN KE SQ+ ++V +AE Sbjct: 600 RRYPRALVHELIYTSRLTAEQCHDAAAVEAWTKQLVEQLNAKEVGASQYSYEVELHAELG 659 Query: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718 L P + VRTHGV ++ L +F+ EY ++ L E L GLLEE A+I+RGER PV+S Sbjct: 660 LSLPKIIVRTHGVTHEHALSVDFLNSKEYGKLADLSEVLDGLLEEGAYIKRGERTLPVSS 719 Query: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 F +AL+WLVKES RGLS QRYKGLGEMNP+QLWETTMDPE+RRM++VT++DA+ ADQLFT Sbjct: 720 FAEALEWLVKESMRGLSRQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADQLFT 779 Query: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 TLMGD VEPRR FIEENALK AN+D+ Sbjct: 780 TLMGDQVEPRRHFIEENALKVANLDV 805 >UniRef50_B6IVV7 DNA gyrase subunit B n=192 Tax=cellular organisms RepID=B6IVV7_RHOCS Length = 876 Score = 864 bits (2232), Expect = 0.0, Method: Composition-based stats. Identities = 455/864 (52%), Positives = 580/864 (67%), Gaps = 63/864 (7%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 + Y +SSIKVLKGLDAVRKRPGMYIGDTDDG+GLHHMV+EVVDNAIDEALAG+ + V Sbjct: 15 AEEYGASSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGYADRVEV 74 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 T++AD SV+V+D+GRGIP IHP EGVSAAEVIMT LHAGGKFD NSYKVSGGLHGVGVS Sbjct: 75 TLNADGSVTVRDNGRGIPVDIHPGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVS 134 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-----------TGTMVRFW 170 VVNALS+ L L + R+G++ + HG APLA G TGT V F Sbjct: 135 VVNALSETLFLRVWRKGRVWEMTFRHGDAVAPLADVGAAPVVASGPRAGQPLTGTEVTFL 194 Query: 171 PSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKR--DGKEDHFHYEGGIKAFVEY 228 PS +TFT TEF+++ L R REL+FLNSGV + D R + K YEGG++AFV+Y Sbjct: 195 PSKQTFTK-TEFDFQTLEHRFRELAFLNSGVLLVFTDARGVEPKVTELFYEGGLEAFVQY 253 Query: 229 LNKNKTPIHPNIFYFSTEKDG-----IGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLA 283 L+++K +H E+ + VEVALQWND + E+ CFTNNIPQRDGGTHLA Sbjct: 254 LDRSKAALHKPSIAMRGERVSDLGTTVTVEVALQWNDSYHESCLCFTNNIPQRDGGTHLA 313 Query: 284 GFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSS 343 GFRAA+TRT+N Y ++ G KK KV+ +GDD REGL V+SVKVPDPKFSSQTKDKLVSS Sbjct: 314 GFRAALTRTINKYAEESGILKKEKVALSGDDMREGLTCVLSVKVPDPKFSSQTKDKLVSS 373 Query: 344 EVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGL 403 EV+ VE + + LA + E+P DA+ +VGK+++AA AREAARRARE+TRRKGALD+A L Sbjct: 374 EVRPVVETVVADALATWFEEHPADARRIVGKVVEAAAAREAARRARELTRRKGALDMASL 433 Query: 404 PGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLS 463 PGKLADCQERDPALSEL++VEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKMLS Sbjct: 434 PGKLADCQERDPALSELFIVEGDSAGGSAKQGRSRQFQAILPLRGKILNVERARFDKMLS 493 Query: 464 SQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVE 523 S E+ TLI ALG GIGR+E++PDK RYH IIIMTDADVDG+HIRTLLLTFFYRQMP ++E Sbjct: 494 SAEIGTLIAALGTGIGREEFDPDKARYHKIIIMTDADVDGAHIRTLLLTFFYRQMPALIE 553 Query: 524 RGHVYIAQPPLYKVKKGK-QEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEK 582 RG++YIAQPPLY+VK+G +E+Y+KDD ++ Y I+ D T T +G+ L Sbjct: 554 RGYLYIAQPPLYRVKRGTAKERYLKDDRQLEDYLIAQGTDDVTF-TLGDGTTRSGDDLRA 612 Query: 583 LVSEYNATQKMINRMERR-YPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKE 641 LV + + + + R+ + ++++ L+ L + + LND Sbjct: 613 LVEQARVARHALTTLARKAGSREVVEQAALSGALSSRLLDNPDLARTLAEEVARRLNDLA 672 Query: 642 ----------------------------------------QHGSQWKFDVHTNAEQNLFE 661 W ++ + + Sbjct: 673 VRQAAAALQASGGPAPEGDGSPGSASAAGATGTGTASTGGVPAGGWTAELIEDGPHGVGG 732 Query: 662 PIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFI-ERGERRQPVASFE 720 ++ R GV + LD + + E RR+ + E LR + + + R +R VA Sbjct: 733 YVLARRRRGVTHRHVLDVDLLKSVEARRLDGMAEALRAVYDTPGVLTHRVKRLAAVAGPA 792 Query: 721 QALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTL 780 +D ++++ R GL+IQRYKGLGEMNP+QLWETT+DP +R +L+V V A A+++F+TL Sbjct: 793 GLMDAVIEQGRAGLAIQRYKGLGEMNPDQLWETTLDPANRTLLQVKVSHADEAEEVFSTL 852 Query: 781 MGDAVEPRRAFIEENALKAANIDI 804 MGD VEPRR FI+ENALK AN+D+ Sbjct: 853 MGDLVEPRRDFIQENALKVANLDV 876 >UniRef50_Q89B37 DNA gyrase subunit B n=30 Tax=Proteobacteria RepID=GYRB_BUCBP Length = 804 Score = 853 bits (2203), Expect = 0.0, Method: Composition-based stats. Identities = 504/806 (62%), Positives = 643/806 (79%), Gaps = 4/806 (0%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 M N+Y SS+IK+LKGLDAV+KRPGMYIG+TDDGTGLHHMVFEVVDN+IDEALAG CK II Sbjct: 1 MKNTYTSSNIKILKGLDAVKKRPGMYIGNTDDGTGLHHMVFEVVDNSIDEALAGFCKNII 60 Query: 61 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 VTIH DNS+S+QDDGRGIPT IH EEG+SAAEVIMTVLHAGGKFD+ SYKVSGGLHGVGV Sbjct: 61 VTIHDDNSISIQDDGRGIPTDIHDEEGISAAEVIMTVLHAGGKFDNTSYKVSGGLHGVGV 120 Query: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVT 180 SVVNALS+KLEL I R+ KI+ QIY++G P+ L++ G T+ TGT +RFWP+LE FTNVT Sbjct: 121 SVVNALSKKLELFIYRDKKIYYQIYKNGYPKNTLSIIGYTKITGTKIRFWPNLEIFTNVT 180 Query: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNI 240 +F +EIL+KRLRELSFLNS VSI L D + ++F+ +GG+K F+ YLNKNK PIH I Sbjct: 181 QFNWEILSKRLRELSFLNSNVSIYLDDAKKHINENFYQQGGLKEFIIYLNKNKKPIHSKI 240 Query: 241 FYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKE 300 FYFS++K+ + VE+A+QWN GFQENIYC+TNNIPQ+DGGTHL+GFR+A+TRT+N Y+DKE Sbjct: 241 FYFSSKKNNVEVEIAMQWNKGFQENIYCYTNNIPQQDGGTHLSGFRSALTRTMNNYLDKE 300 Query: 301 GYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEY 360 GY KK K++ GDD REGL A++S+K+ DPKFSSQTK+KLVSSEVKSA+E +NE L E+ Sbjct: 301 GYIKKNKINIIGDDTREGLTAIISIKINDPKFSSQTKNKLVSSEVKSALESLVNEFLMEF 360 Query: 361 LLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSEL 420 LLENP ++K +V KII+++R R AARRAREMTR+KG LDL GLPGKL+DCQERDPALSE+ Sbjct: 361 LLENPQESKNIVTKIIESSRVRNAARRAREMTRKKGTLDLIGLPGKLSDCQERDPALSEI 420 Query: 421 YLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR 480 YLVEGDSAGGSAKQ RNRKNQAILPLKGKILNVEKAR++KMLSSQEV TLITALGCGIG+ Sbjct: 421 YLVEGDSAGGSAKQARNRKNQAILPLKGKILNVEKARYEKMLSSQEVTTLITALGCGIGK 480 Query: 481 DEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKG 540 +EYNP+KLRYH IIIMTDADVDGSHIRTLLLTFFYR MPEI++RG++YIAQPPLYKV K Sbjct: 481 NEYNPEKLRYHRIIIMTDADVDGSHIRTLLLTFFYRYMPEIIQRGYLYIAQPPLYKVTKN 540 Query: 541 KQEQYIKDDEAMDQYQISIALDGATLHTNASA--PALAGEALEKLVSEYNATQKMINRME 598 + +YIKD M+ Y++S AL+ L +N L+K++SEY Q + +++ Sbjct: 541 NKTRYIKDKNTMENYKLSTALENTILESNTDKEIKIKCNYTLKKIISEYKIIQTIFFKIK 600 Query: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658 +P +L E++Y P L L+DE V W+N V +L K + + N++ Sbjct: 601 DNFPLNILNEMLYHPKLNN--LNDEVYVNNWINNFVIQLQKKSSSTRNYSAHITFNSKDK 658 Query: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718 +FEP+++++ + +Y D FI EY++I +LG+KL+ +++++ I++ + + + Sbjct: 659 IFEPLIKIQKNAEVKEYKFDITFINSYEYQKIYSLGKKLQEMIQKNIHIKKNNKTYSIKN 718 Query: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 F++ + L++ S + + IQRYKGLGEMNPEQLW+TTM+PE+RRML++T+ + ++LF Sbjct: 719 FQKNFELLIQNSFKNVLIQRYKGLGEMNPEQLWKTTMNPETRRMLKITLHNIDTTNKLFN 778 Query: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 TLMGD+VEPR+ FIE ALKA+NIDI Sbjct: 779 TLMGDSVEPRKLFIELYALKASNIDI 804 >UniRef50_B2UCF3 DNA gyrase subunit B n=47 Tax=Proteobacteria RepID=B2UCF3_RALPJ Length = 842 Score = 839 bits (2166), Expect = 0.0, Method: Composition-based stats. Identities = 492/831 (59%), Positives = 607/831 (73%), Gaps = 30/831 (3%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 +NSYD++SI++L+GL+AVRKRPGMYIGDT DGTGLHH+VFEV+DN+IDEALAGHC EI V Sbjct: 14 ANSYDAASIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGHCTEIQV 73 Query: 62 TIHADNSVSVQDDGRGIPTGIH----PEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHG 117 TIH DNS+SV D+GRGIPTGI E SA E+ MT LHAGGKF+ NSYKVSGGLHG Sbjct: 74 TIHTDNSISVIDNGRGIPTGIKFDDKHEPKRSATEIAMTELHAGGKFNQNSYKVSGGLHG 133 Query: 118 VGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQ-----------------APLAVTGET 160 VGVS VN LS+ +++ +++ GK+H + GVPQ +PL V G T Sbjct: 134 VGVSCVNGLSKWMKVTVRQGGKVHYIEFAQGVPQNRLIETVQGPDGQMVEVSPLRVLGTT 193 Query: 161 EKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEG 220 +K GT V F E FTN E+ YEIL+KR+RELSFLN+GV IRL D+R GKE+ F + G Sbjct: 194 DKRGTEVHFLADEEIFTN-VEYHYEILSKRIRELSFLNNGVHIRLTDQRTGKEEDFAFSG 252 Query: 221 GIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGT 280 G+K FVEY+NKNKT +HP IF+ + EKDG+ VEV++QWND + E + CFTNNIPQRDGGT Sbjct: 253 GVKGFVEYINKNKTVLHPTIFFAAGEKDGVAVEVSMQWNDAYNEQVLCFTNNIPQRDGGT 312 Query: 281 HLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKL 340 HL G RAAMTR +N Y+ +KKAKV +GDD REGL V+SVKVP+PKFSSQTKDKL Sbjct: 313 HLTGLRAAMTRVINKYIADNEIAKKAKVDTSGDDMREGLTCVLSVKVPEPKFSSQTKDKL 372 Query: 341 VSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDL 400 VSSEV+ VE+ + + L+++LLE P DAKI+ GKI++AARAREAAR+AREMTRRKG LD Sbjct: 373 VSSEVRLPVEEVVAKALSDFLLETPVDAKIICGKIVEAARAREAARKAREMTRRKGVLDG 432 Query: 401 AGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 460 GLPGKLADCQE+DPALSEL++VEGDSAGGSAKQGR+RK QAILPLKGKILNVE+ARFDK Sbjct: 433 MGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDK 492 Query: 461 MLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPE 520 MLSSQEV TLITA+G GIG+D+YN DKLRYH IIIMTDADVDGSHIRTLLLTFFYRQMPE Sbjct: 493 MLSSQEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPE 552 Query: 521 IVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEAL 580 I+ERGHVYIAQPPLYK+K GK+E+YIKDD M Y + ALD A L +AG+AL Sbjct: 553 IIERGHVYIAQPPLYKIKHGKEERYIKDDVEMAAYLVRQALDTAVLVRPDGTE-IAGDAL 611 Query: 581 EKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDK 640 +L +Y ++ +I R+ R L+ + +L ++ + + R + A + E+ Sbjct: 612 AELARQYQLSRGVIERLSRVIDADALRAIAEGVSLDLSNEAAAEASARTLKARLLEMQGN 671 Query: 641 EQHGSQ---WKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKL 697 + + + + + +V R HG +D +F+ G +Y + + Sbjct: 672 ASSANGGATADAFMQYDEKTEKYRIMVVRRQHGNQRLSHIDADFVAGADYTALSSTAATF 731 Query: 698 RGLLEEDAFIERGE----RRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWET 753 +GL+ + A + RG R Q VA F A+ WL+ E+ RG+S QRYKGLGEMNPEQLWET Sbjct: 732 QGLIGDGAKVRRGTGDKVREQNVADFHAAMTWLLSEAERGVSRQRYKGLGEMNPEQLWET 791 Query: 754 TMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 TMD RR+LRV ++DAIAADQ+FTTLMGD VEPRR FIE NAL A NID+ Sbjct: 792 TMDVTQRRLLRVQIEDAIAADQIFTTLMGDDVEPRRNFIESNALVARNIDV 842 >UniRef50_D0LFL2 DNA gyrase subunit B n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LFL2_HALO1 Length = 821 Score = 837 bits (2163), Expect = 0.0, Method: Composition-based stats. Identities = 415/813 (51%), Positives = 560/813 (68%), Gaps = 13/813 (1%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 + YD+ SI VLKGL+AVRKRPGMYIGDTDDG+GLHHMV EVVDNA+DEALAG+C + + Sbjct: 12 ATEYDADSITVLKGLEAVRKRPGMYIGDTDDGSGLHHMVHEVVDNAVDEALAGYCDRVDI 71 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 TIH+DNS++V+D+GRGIP +H +EG AAE++MTVLHAGGKF+ NSYKVSGGLHGVGVS Sbjct: 72 TIHSDNSITVEDNGRGIPVAVHKDEGRPAAELVMTVLHAGGKFNQNSYKVSGGLHGVGVS 131 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTE 181 VVNALS+ L+L I+REGK++ Q Y G+P + L TG T++ GT + F P E F TE Sbjct: 132 VVNALSRTLKLEIRREGKVYFQEYRQGIPVSDLRSTGTTDRRGTKITFLPDPEVFKQ-TE 190 Query: 182 FEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIF 241 F + L++R RELS+LNSG++I + D+R+ ++ F YEGG+ +FV LN NK P+ + Sbjct: 191 FSFGALSQRFRELSYLNSGLTIAITDERESQQQVFCYEGGMASFVADLNANKNPV-TEVV 249 Query: 242 YFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEG 301 F+ E++G+ V++A+QWND + E I CFTN I +DGGTHL GFR +TRT+NAY + Sbjct: 250 AFTDEREGVTVDIAMQWNDSYAEQINCFTNTIKNKDGGTHLTGFRQGLTRTVNAYAAENK 309 Query: 302 YSKKAK-VSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEY 360 K+ K + +G+D REGL+AV+SVKV DPKFS+Q KDKLVSSEV AV +N+ L + Sbjct: 310 LLKELKGNNLSGEDLREGLVAVISVKVADPKFSNQPKDKLVSSEVAGAVAAVVNDKLQSF 369 Query: 361 LLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSEL 420 NP DA+ ++ K + AARAR+AAR+AREM +RKGAL+ LPGKLADCQERDP+ EL Sbjct: 370 FEHNPKDARSIIQKAVVAARARDAARKAREMVQRKGALEYTSLPGKLADCQERDPSKCEL 429 Query: 421 YLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR 480 ++VEG+SAGGSAKQGR+R+ QAILPLKGKILNVE+AR DKMLSSQE+ TLITALGCGIG Sbjct: 430 FIVEGESAGGSAKQGRDREFQAILPLKGKILNVERARMDKMLSSQEIVTLITALGCGIGP 489 Query: 481 DEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKG 540 E + +LRYH I+IMTDADVDGSHIRTLLLTFF+RQ PEI+E H+YIAQPPL+KVK+G Sbjct: 490 -EKDMGRLRYHRIVIMTDADVDGSHIRTLLLTFFFRQYPEIIENNHLYIAQPPLFKVKRG 548 Query: 541 KQEQYIKDDEAMDQYQISIALDGATLH--------TNASAPALAGEALEKLVSEYNATQK 592 K E Y+K++ +++ Y + + + + + P + GEAL + + N ++ Sbjct: 549 KSETYLKNEHSLEDYVLDLVSKELVVRGTSGDGAGGDDAGPEITGEALHAFIKDTNEYRR 608 Query: 593 MINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVH 652 ++++R + I TE DL+ E+ V R + + L + + +F++ Sbjct: 609 HYTQLDKRGDSRLFASFIEGGEFTEQDLASEEGVERVRAGMRAYLEAHHKDLADLEFELV 668 Query: 653 TNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDA-FIERGE 711 + E +++ + V D + + + E I L + L L + +GE Sbjct: 669 RDEEHSVYALRAPLEGGNVRRDTIIGRDLLQTREVEEIARLTKSLDATLRGPYVLVHKGE 728 Query: 712 RRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI 771 V + ++ + + R+GLSIQRYKGLGEMN +QLW+TTM P+ R +L+V + Sbjct: 729 DIGTVTTLDELAEAVEAVGRKGLSIQRYKGLGEMNSDQLWDTTMCPDQRTLLQVRIDARE 788 Query: 772 AADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 A +F+ LMGD VEPRR FIE NAL N+DI Sbjct: 789 EAADVFSVLMGDLVEPRRHFIENNALNVRNLDI 821 >UniRef50_O67137 DNA gyrase subunit B n=13 Tax=cellular organisms RepID=GYRB_AQUAE Length = 792 Score = 837 bits (2163), Expect = 0.0, Method: Composition-based stats. Identities = 364/803 (45%), Positives = 512/803 (63%), Gaps = 19/803 (2%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Y + +IK + GL+ VR RP MYIGD + GLHH+++E++DNA+DEA+AG+ + I V Sbjct: 9 PQEYTAEAIKAVSGLEHVRLRPAMYIGDIGE-RGLHHLIWEILDNAVDEAVAGYARNISV 67 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 TIH DNSV+V+DDGRGIP IHPE G A E++ T+L AGGKF+ Y SGGLHGVG S Sbjct: 68 TIHRDNSVTVEDDGRGIPVDIHPETGKPAVEMVFTMLGAGGKFEKKVYTYSGGLHGVGAS 127 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTE 181 VVNALS+ L + + R+GKI+R ++ G PL V GET+K GT V F P E F TE Sbjct: 128 VVNALSEWLIVEVYRDGKIYRMAFKRGEVVEPLHVVGETKKRGTKVSFKPDPEIF-ETTE 186 Query: 182 FEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIF 241 +++I+ KR+REL++LN V L D+R GK + ++ GI+ V+YLN+ K P+ +I Sbjct: 187 IKFDIVEKRVRELAYLNPEVKFELTDERLGKHLIYKFDRGIEELVKYLNEGKEPLFKDII 246 Query: 242 YFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEG 301 EK+G+ V++A Q+ ++E I F NNI +GGTH+ GFR+ +++ + Sbjct: 247 RIQGEKEGVIVDIAFQYVKDYKERIESFVNNIKTVEGGTHVTGFRSGLSKAVIRMAQGLK 306 Query: 302 YSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYL 361 +K+ K S TG+D REGL AVV+ KVP+P+F QTK KL + VK VE + L Y Sbjct: 307 LAKELKKSFTGEDVREGLTAVVACKVPNPQFEGQTKTKLGNQNVKQIVESITYDFLTSYF 366 Query: 362 LENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELY 421 + K +V K I+AA AREAA++A+E+ RRK L+ LPGKLADC E DP+ E++ Sbjct: 367 EKKRDVLKAIVEKAIEAALAREAAKKAKELVRRKSPLEEGVLPGKLADCSETDPSKCEIF 426 Query: 422 LVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRD 481 LVEGDSAGGSAKQ R+R+ QAILPL+GKI+NVEKAR DK+LS+ E+ +++ALGCGIG D Sbjct: 427 LVEGDSAGGSAKQARDRRYQAILPLRGKIINVEKARIDKVLSNDEIKAIVSALGCGIGED 486 Query: 482 EYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGK 541 + KLRYH II+MTDADVDGSHIRTLLLTFFYR MP++VE G+VYIA+PPLY+VKKGK Sbjct: 487 -LDLKKLRYHKIILMTDADVDGSHIRTLLLTFFYRFMPKLVEEGYVYIAEPPLYRVKKGK 545 Query: 542 QEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRY 601 +E YIKDD+ + + ++ + L +A GE L +L+ + + + + Sbjct: 546 KEIYIKDDKEFEHFLLNEIREKGRL-VDAREKEFKGEELVRLLIDLKDYEDAYRALVKSK 604 Query: 602 PKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFE 661 + ++ L+ + E DL + V + + EL D ++ D N + ++ Sbjct: 605 GENLVNFLLTH-RVREEDLRNPARVKEITHLMEEELGD-------YRVDTKYNELEGAYD 656 Query: 662 PIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQ 721 I G +D F++ YR + E + L F E ++ + S + Sbjct: 657 IIFYDDKLGTK--TIIDVNFLSSLSYREVL---EGIHLHLPVQVFFE--NKKVEINSLGE 709 Query: 722 ALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLM 781 D + +R G+ +QRYKGLGEMNPEQLWETTM+P++RR+ +V ++DA AD++FT LM Sbjct: 710 IYDKFMDFARSGMEVQRYKGLGEMNPEQLWETTMNPKTRRLKKVKIEDAAEADRIFTILM 769 Query: 782 GDAVEPRRAFIEENALKAANIDI 804 G+ VEPRR FIE A + ++D+ Sbjct: 770 GEQVEPRREFIEAYAKEVKHLDV 792 >UniRef50_A3EQC0 DNA gyrase subunit B n=7 Tax=Bacteria RepID=A3EQC0_9BACT Length = 818 Score = 835 bits (2157), Expect = 0.0, Method: Composition-based stats. Identities = 393/814 (48%), Positives = 537/814 (65%), Gaps = 16/814 (1%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 Y + I+VL+GL+AVR RPGMYIG T GLHH+V+E+VDN++DEALAGHC EI +T Sbjct: 9 EEYTAEHIRVLEGLEAVRVRPGMYIGSTG-IDGLHHLVYELVDNSVDEALAGHCSEIHIT 67 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 IH D SV+V D+GRGIPTG+H E+ SAAEV++TVLHAGGKF++N YKVSGGLHGVGVSV Sbjct: 68 IHPDRSVTVADNGRGIPTGMHAEQKRSAAEVVLTVLHAGGKFNNNLYKVSGGLHGVGVSV 127 Query: 123 VNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEF 182 VNALS+ L L I + G IHRQ Y G P APLAV GET + GT++RFWP + +F Sbjct: 128 VNALSETLFLEIHQNGLIHRQTYHKGTPDAPLAVFGETTQRGTIIRFWPDMTIM-ETDQF 186 Query: 183 EYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFY 242 ++ LA R REL+FLN ++I L+D+ +E+ FH+EGG+++FV +LN+NK +H +F+ Sbjct: 187 SFDTLAHRFRELAFLNPVLTIHLKDEETLREETFHFEGGVQSFVSFLNENKKTLHDVLFF 246 Query: 243 FSTEKDGIGVEVALQWNDG-FQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEG 301 T +DG EVA Q+ + E + F NNI R+GGTH+ GFR A+T+T+N ++ ++ Sbjct: 247 RKTLEDGSQFEVAFQYQESTENETVLGFANNIHTREGGTHVRGFRTAITKTINRFIREKQ 306 Query: 302 YSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYL 361 +K G+D REGL ++SV++P P+F QTK KL SS V A+E ++E L E Sbjct: 307 LNK--GEEVRGEDVREGLTGIISVRIPGPQFEGQTKAKLGSSWVAGAMESFLSEALQEKF 364 Query: 362 LENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELY 421 E+P AK + K + A+AREAAR+A+++ +RK L+ + LPGKLADCQE DPA SELY Sbjct: 365 EEDPLTAKKIAEKAVLTAQAREAARKAKDLAKRKNVLEGSNLPGKLADCQESDPAKSELY 424 Query: 422 LVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR-FDKMLSSQEVATLITALGCGIGR 480 +VEGDSAGGSAKQGR+R+ QAILPLKGKILNVEK+R +K +++ EV LITA+GCG+G Sbjct: 425 IVEGDSAGGSAKQGRDRRFQAILPLKGKILNVEKSRGIEKFITNDEVRALITAVGCGLGE 484 Query: 481 DEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKG 540 +E++ KLRYH IIIMTDADVDG+HIRTLLLTFF+R M +++ VYIAQPPLYKV G Sbjct: 485 EEFSEKKLRYHKIIIMTDADVDGAHIRTLLLTFFFRHMNPLIDGQFVYIAQPPLYKVSYG 544 Query: 541 KQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEA-LEKLVSEYNATQKMINRMER 599 +QE+Y+ +DEA+ Y + +A + + LA E + KL+ + +++ +R Sbjct: 545 RQERYLLNDEALQAYILELACADWMFYDEQAGHWLAREEAVAKLLVLVHFEEQVRAHAQR 604 Query: 600 RYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELN---DKEQHGSQWKFDV---HT 653 + +L+ + P L +E+ R V+ L E D + Q + D + Sbjct: 605 FGNEMLLRLIGMFPETGIELLKNEEAAQRLVSFLTGEYPGWVDGGRLAGQVERDPGMSES 664 Query: 654 NAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIER---G 710 + E+ F + G ++ LDH + + + GLL F+ R Sbjct: 665 HPEEEWFRIRFFTESLGYESRLVLDHYLLAQLLAGKRSLKLLRQSGLLFPGGFVLRRGAE 724 Query: 711 ERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDA 770 S + L +L R+ LSIQRYKGLGEMNPEQLWETTMDP R +L+V++ D Sbjct: 725 GEEIRFRSPRELLSFLESPVRQKLSIQRYKGLGEMNPEQLWETTMDPSRRTLLKVSIPDY 784 Query: 771 IAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 + AD++FTTLMG+ V PRR FIE++AL AN+DI Sbjct: 785 VEADRVFTTLMGEQVAPRREFIEKHALDVANLDI 818 >UniRef50_C1DUC4 DNA gyrase subunit B n=5 Tax=Bacteria RepID=C1DUC4_SULAA Length = 809 Score = 830 bits (2144), Expect = 0.0, Method: Composition-based stats. Identities = 371/814 (45%), Positives = 512/814 (62%), Gaps = 27/814 (3%) Query: 4 SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTI 63 Y + +I+ + GLD VR RP MYIGD + GLHH+V+E++DNA+DEA+AG+ K I V I Sbjct: 10 EYSAEAIQAVTGLDHVRARPAMYIGDIGE-RGLHHLVWEILDNAVDEAMAGYAKNITVII 68 Query: 64 HADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVV 123 H D SV+V+DDGRGIP IHPE + A E++ T+L AGGKF +Y+ SGGLHGVG SVV Sbjct: 69 HQDGSVTVEDDGRGIPVDIHPEFKIPAVEMVFTILGAGGKFSKKAYQYSGGLHGVGASVV 128 Query: 124 NALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFE 183 NALS L + + R GKI+RQ Y +G P PL V G+T K GT V F P F T + Sbjct: 129 NALSSWLVVEVYRNGKIYRQEYSYGKPVYPLKVVGDTTKRGTKVTFKPDDSIF-ETTTIK 187 Query: 184 YEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYF 243 ++I+ KR+REL+FLN GV + D+R ++ F++E GI FV LN+ K P+ + Y Sbjct: 188 FDIIQKRVRELAFLNPGVRFVVIDERKDIKEEFYFENGIVDFVRVLNQAKEPLFDEVIYV 247 Query: 244 STEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYS 303 EKDG+ VEVA Q+ + E I F NNI +GGTH++GFRAA+TR++N + Sbjct: 248 KGEKDGVLVEVAFQYTKSYNEVIESFVNNIKTVEGGTHVSGFRAALTRSMNKTLSGMKLP 307 Query: 304 KKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLE 363 K+ K +GDD REGL AV+SVKVP+P+F QTK KL + +VK VE + + L EY + Sbjct: 308 KELKSGVSGDDLREGLTAVISVKVPEPQFEGQTKTKLGNQDVKRIVESVVGDYLLEYFEK 367 Query: 364 NPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLV 423 N A + K I+AA AREAAR+A+E++RRK L+ + LPGKLADC E DP L EL++V Sbjct: 368 NKDIALKIAEKAIEAAIAREAARKAKEISRRKSFLEDSSLPGKLADCSESDPQLCELFIV 427 Query: 424 EGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIG---- 479 EG+SAGGSAKQGR+R+ QAILPLKGKILNVEKAR DK+LS++E+ ++ A+G GIG Sbjct: 428 EGESAGGSAKQGRDRRTQAILPLKGKILNVEKARIDKILSNEEIRAIVNAIGTGIGLPIK 487 Query: 480 --------RDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQ 531 + ++ KLRYH II+M DADVDGSHI TLLLT FYR P+I+E GH+YIAQ Sbjct: 488 SEDEEKKEDEGFDLSKLRYHKIILMADADVDGSHITTLLLTLFYRFFPQIIENGHLYIAQ 547 Query: 532 PPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQ 591 PPLYK+KKG+ E Y+KDDE + + I A D + + L+ + + Sbjct: 548 PPLYKLKKGRSEIYVKDDEELSKIVIDFATDEIAI----EGKNFSKSQLKDIAKLSKEYK 603 Query: 592 KMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDV 651 + + +R K ++ L+ LTE D+ ++ V V L +L E + Sbjct: 604 NLKESLYKRKDKVVIDTLL-SLNLTEDDIRNKGKVKEVVEFLRQKLPSYEIY-------Y 655 Query: 652 HTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEE-DAFIERG 710 N E++ +E + +D +F++ Y ++ + L+ +L E I Sbjct: 656 KFNPEESDYEIFIERVERFSKVVNKVDIDFLSSYAYLKVKEIENHLKSMLGELPVEISYK 715 Query: 711 ERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDA 770 ++ V + D + + G +QRYKGLGEMNPEQLWETTM+P++RR+L+VT++DA Sbjct: 716 QKSIKVEDLDDLYDVIFEAGMSGCEVQRYKGLGEMNPEQLWETTMNPKTRRLLQVTIEDA 775 Query: 771 IAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 AD++F+ LMG+ VEPRR FI + A + N+DI Sbjct: 776 ALADEVFSILMGEKVEPRREFIMKYAKEVRNLDI 809 >UniRef50_B8GXQ0 DNA gyrase subunit B n=17 Tax=cellular organisms RepID=GYRB_CAUCN Length = 805 Score = 829 bits (2142), Expect = 0.0, Method: Composition-based stats. Identities = 446/816 (54%), Positives = 558/816 (68%), Gaps = 30/816 (3%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 + Y + SIKVLKGLDAVRKRPGMYIGDTDDG+GLHHMV+EVVDNAIDEALAGH ++ V Sbjct: 7 AAQYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHATKVQV 66 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 ++AD SV+V DDGRGIP +H EGVSAAEVIMT LHAGGKFD NSYKVSGGLHGVGVS Sbjct: 67 ILNADGSVTVTDDGRGIPVDMHEGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVS 126 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-----------TGTMVRFW 170 VVNALS LEL+I R GK+H+ +E G L VTG++ TGT V F+ Sbjct: 127 VVNALSDWLELLIHRNGKVHQMRFERGDAVTSLKVTGDSPVRTEGPKAGETLTGTEVTFF 186 Query: 171 PSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRD--GKEDHFHYEGGIKAFVEY 228 PS +TF EF+ + L RLREL+FLNSGV+I +D RD E+ YEGGI+AFV + Sbjct: 187 PSKDTFA-FIEFDRKTLEHRLRELAFLNSGVTIWFKDHRDVEPWEEKLFYEGGIEAFVRH 245 Query: 229 LNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAA 288 L+K KTP+ KD + +++AL WND + E + CFTNNIPQRDGGTHL+ FRAA Sbjct: 246 LDKAKTPLLKAPIAVKGVKDKVEIDLALWWNDSYHEQMLCFTNNIPQRDGGTHLSAFRAA 305 Query: 289 MTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSA 348 +TR + +Y + G KK KVS G+D+REGL V+SVKVPDPKFSSQTKDKLVSSEV+ A Sbjct: 306 LTRIITSYAESSGILKKEKVSLGGEDSREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPA 365 Query: 349 VEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLA 408 VE ++E L+ + E+P +AK +V KI +AA AREAAR+ARE+TRRK ALD+ LPGKLA Sbjct: 366 VEGLVSEGLSTWFEEHPNEAKAIVTKIAEAAAAREAARKARELTRRKSALDITSLPGKLA 425 Query: 409 DCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 468 DC ERDPA SE+++VEGDSAGGSAKQ RNR NQA+LPL+GKILNVE+ARFDKMLSS ++ Sbjct: 426 DCSERDPAKSEIFIVEGDSAGGSAKQARNRDNQAVLPLRGKILNVERARFDKMLSSDQIG 485 Query: 469 TLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVY 528 TLITALG GIGRD++NPDK+RYH I++MTDADVDG+HIRTLLLTFFYRQMPE++ERG++Y Sbjct: 486 TLITALGAGIGRDDFNPDKVRYHKIVLMTDADVDGAHIRTLLLTFFYRQMPELIERGYIY 545 Query: 529 IAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYN 588 IAQPPLYK KGK +Y+KDD MD + + +DGA L AS + G+ L LV Sbjct: 546 IAQPPLYKASKGKSSRYLKDDAEMDAFLVDEGVDGAEL-DLASGERMTGQDLLALVQTCR 604 Query: 589 ATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWK 648 + + I+R+ R P +++ L E+ L +E D G + Sbjct: 605 SAKANIDRLAARAPATAIEQAALSGLLGESP---NAAAAATRLDLYAEEGDGPWSGER-- 659 Query: 649 FDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIE 708 + GV LD + + RR+ KL + A Sbjct: 660 ---------GDTGFVFSRVRRGVSERVVLDDVLLHAADARRLAERAVKLTEIFSGRAIFR 710 Query: 709 RGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVK 768 R ++ V ++ ++ R+GL+IQRYKGLGEMNP+QLWETT+D E+R +L+V V Sbjct: 711 RKDKSTTVRGPLDLVNAVLDAGRKGLTIQRYKGLGEMNPDQLWETTLDAEARTLLQVRVN 770 Query: 769 DAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 A AD +F+ LMGD VEPRR FI+ENAL A +D+ Sbjct: 771 HADDADDMFSRLMGDLVEPRREFIQENALDAE-VDV 805 >UniRef50_A1TI33 DNA gyrase subunit B n=16 Tax=Burkholderiales RepID=A1TI33_ACIAC Length = 877 Score = 824 bits (2127), Expect = 0.0, Method: Composition-based stats. Identities = 478/845 (56%), Positives = 595/845 (70%), Gaps = 45/845 (5%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 S+ Y +I++L+GL+AVRKRPGMYIGDT DGTGLHH+VFEVVDN+IDEALAGHC +I+V Sbjct: 36 SDGYGEGAIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVV 95 Query: 62 TIHADNSVSVQDDGRGIPTGIH----PEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHG 117 TIH+DNS+SV D+GRGIPTG+ E SAAE+ +T LHAGGKF+ NSYKVSGGLHG Sbjct: 96 TIHSDNSISVVDNGRGIPTGVKMDDKHEPKRSAAEIALTELHAGGKFNQNSYKVSGGLHG 155 Query: 118 VGVSVVNALSQKLELVIQREGKIHRQIYE------------HGVPQAPLAVTGETEKTGT 165 VGVS VNALS+ L L ++R+GK+H + +GV +P+ VTGET+K GT Sbjct: 156 VGVSCVNALSKMLRLTVRRDGKVHLLEFSQGFVQNRILETVNGVEVSPMRVTGETDKRGT 215 Query: 166 MVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAF 225 V F P E F +F YEILAKRLRELSFLN+GV IRL+D+R GKED F GG+ F Sbjct: 216 EVHFLPDTEIFKENNDFHYEILAKRLRELSFLNNGVRIRLKDERTGKEDDFSGAGGVMGF 275 Query: 226 VEYLNKNKTPIHPNIFYFSTEK----------DGIGVEVALQWNDGFQENIYCFTNNIPQ 275 V+++N +K +HPN F+ + + IGVEVA+QWNDGF E++ CFTNNIPQ Sbjct: 276 VQFINASKKVLHPNAFHATGSRPAETYGGIPGTEIGVEVAMQWNDGFNESVLCFTNNIPQ 335 Query: 276 RDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQ 335 RDGGTHL G RAAMTR + Y+++ +KKAKV +GDD REGL V+SVKVP+PKFSSQ Sbjct: 336 RDGGTHLTGLRAAMTRVIGKYIEQNELAKKAKVEVSGDDMREGLCCVLSVKVPEPKFSSQ 395 Query: 336 TKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRK 395 TKDKLVSSEV++ VE + + L +YL E P DAKI+ GKI++AARAREAAR+AREMTRRK Sbjct: 396 TKDKLVSSEVRAPVEDIVAKALTDYLEERPNDAKILCGKIVEAARAREAARKAREMTRRK 455 Query: 396 GALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 455 G LD GLPGKLADCQE+DPALSE+Y+VEGDSAGGSAKQGR+RK QAILPL+GKILNVEK Sbjct: 456 GVLDGMGLPGKLADCQEKDPALSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEK 515 Query: 456 ARFDKMLSSQEVATLITALGCGIGR-----------DEYNPDKLRYHSIIIMTDADVDGS 504 AR++K+L+S E+ TLITALG GIG+ D++N DKLRYH IIIMTDADVDG+ Sbjct: 516 ARYEKLLTSNEILTLITALGTGIGKASADGTGKGGADDFNVDKLRYHRIIIMTDADVDGA 575 Query: 505 HIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGA 564 HIRTLLLTFFYRQMPE+VERGH+YIAQPPLYKVK GK+E Y+KD A+D + + +AL A Sbjct: 576 HIRTLLLTFFYRQMPELVERGHIYIAQPPLYKVKNGKEELYLKDGPALDTFLLRVALRDA 635 Query: 565 TLHTNA-SAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDE 623 ++ T A L GE L L ++ + +I R+ + L+ + L + D Sbjct: 636 SVTTGGEQARTLDGETLSTLAQKHQVAEAVIERLSAFMDREALRAIADGVALNLDTVEDA 695 Query: 624 QTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFIT 683 + + A + EL +A + + R HG + +F+ Sbjct: 696 EASAVALQAKLRELTTTGVPAE---VAGEFDARTDKPVLRISRRHHGNIKSSIITQDFVH 752 Query: 684 GGEYRRICTLGEKLRGLLEEDAFIERGE----RRQPVASFEQALDWLVKESRRGLSIQRY 739 G +Y + RGLL E A + RGE R + V+ F QA+ WL+KE+ R S QRY Sbjct: 753 GADYAALAEAAHTFRGLLGEGAKVLRGEGERQREEKVSDFRQAMAWLIKEAERTTSRQRY 812 Query: 740 KGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKA 799 KGLGEMNPEQLWETTMDPE RR+LRV ++DAI AD++FT LMGD VEPRR FIE NAL+A Sbjct: 813 KGLGEMNPEQLWETTMDPEVRRLLRVQIEDAIEADRVFTMLMGDEVEPRRDFIETNALRA 872 Query: 800 ANIDI 804 NID+ Sbjct: 873 GNIDV 877 >UniRef50_Q9Z8R3 DNA gyrase subunit B n=80 Tax=cellular organisms RepID=GYRB_CHLPN Length = 805 Score = 820 bits (2117), Expect = 0.0, Method: Composition-based stats. Identities = 383/827 (46%), Positives = 513/827 (62%), Gaps = 52/827 (6%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 +YD+S+I VL+GL AVR+RPGMYIGDT TGLHH+V+EVVDN+IDEA+AG+C I V Sbjct: 6 KNYDASAITVLEGLQAVRERPGMYIGDTG-ITGLHHLVYEVVDNSIDEAMAGYCSRIDVR 64 Query: 63 IHADNSVSVQDDGRGIPTGIHPEE------GVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 116 I D + + D+GRGIP +H E VSA EV++TVLHAGGKFD +SYKVSGGLH Sbjct: 65 ILEDGGIVIVDNGRGIPIEVHERESAKQGREVSALEVVLTVLHAGGKFDKDSYKVSGGLH 124 Query: 117 GVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETF 176 GVGVS VNALS+KL + ++ K ++ + G+P PL +++ GT + F+P + F Sbjct: 125 GVGVSCVNALSEKLVATVFKDKKCYQMEFSRGIPVTPLQYVSVSDRQGTEIVFYPDPKIF 184 Query: 177 TNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDG--KEDHFHYEGGIKAFVEYLNKNKT 234 + T F+ IL KRLREL+FLN G++I D RD + F YEGGI++FV YLN+NK Sbjct: 185 STCT-FDRSILMKRLRELAFLNRGITIVFEDDRDVSFDKVTFFYEGGIQSFVSYLNQNKE 243 Query: 235 PIHPNIFYFSTEKDG----IGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMT 290 + Y + G I E ALQWN G+ E +Y + NNIP R GGTHL GF A+T Sbjct: 244 SLFSEPIYICGTRVGDDGEIEFEAALQWNSGYSELVYSYANNIPTRQGGTHLTGFSTALT 303 Query: 291 RTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVE 350 R +N Y+ +K K++ TG+D REGL AV+SVKVP+P+F QTK KL +S+V S + Sbjct: 304 RVINTYIKAHNLAKNNKLALTGEDIREGLTAVISVKVPNPQFEGQTKQKLGNSDVSSVAQ 363 Query: 351 QQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADC 410 Q + E L + ENP A+++V K+ AA+AREAA++ARE+T RK ALD A LPGKL DC Sbjct: 364 QVVGEALTIFFEENPQIARMIVDKVFVAAQAREAAKKARELTLRKSALDSARLPGKLIDC 423 Query: 411 QERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATL 470 E+DP E+Y+VEGDSAGGSAKQGR+R+ QAILP++GKILNVEKAR K+ +QE+ T+ Sbjct: 424 LEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKIFQNQEIGTI 483 Query: 471 ITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIA 530 I ALGCGIG D +N KLRY IIIMTDADVDGSHIRTLLLTFFYR M ++E VYIA Sbjct: 484 IAALGCGIGADNFNLSKLRYRRIIIMTDADVDGSHIRTLLLTFFYRHMTALIENECVYIA 543 Query: 531 QPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNAT 590 QPPLYKV K K +YI ++ MD Y + + + +++ ++ L GEALE ++ Sbjct: 544 QPPLYKVSKKKDFRYILSEKEMDSYLLMLGTNESSILFKSTERELRGEALESFINVILDV 603 Query: 591 QKMINRMERRYP-----KAMLKELIYQPTLTEADLSDEQTVTRWV------NALVSELND 639 + IN +E++ M KE I P A + Q AL E Sbjct: 604 ESFINTLEKKAIPFSEFLEMYKEGIGYPLYYLAPATGMQGGRYLYSDEEKEEALAQEETH 663 Query: 640 KEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRG 699 K + +K V + + L E + + ++ + + Sbjct: 664 KFKIIELYKVAVFVDIQNQLKEYGLDISSYLIPQKNEIVIGNEDSPSC------------ 711 Query: 700 LLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPES 759 + E+ +++L R+G+ IQRYKGLGEMN +QLW+TTM+PE Sbjct: 712 -------------NYSCYTLEEVINYLKNLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQ 758 Query: 760 RRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENAL--KAANIDI 804 R ++ V++KDA+ AD +FT LMG+ V PRR FIE +AL + N+DI Sbjct: 759 RTLIHVSLKDAVEADHIFTMLMGEEVPPRREFIESHALSIRINNLDI 805 >UniRef50_UPI0001C311B1 DNA gyrase, B subunit n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C311B1 Length = 808 Score = 816 bits (2108), Expect = 0.0, Method: Composition-based stats. Identities = 378/806 (46%), Positives = 528/806 (65%), Gaps = 14/806 (1%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 S SYD+ I VL+GL+AVRKRPGMYIG T GLHH+V+EVVDN++DEALAGH + V Sbjct: 14 SPSYDAQDITVLEGLEAVRKRPGMYIGSTG-IRGLHHLVYEVVDNSVDEALAGHASAVDV 72 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNS-YKVSGGLHGVGV 120 TIH DNS++V D+GRGIP + +EG A EV++TVLHAGGKF D YKVSGGLHGVGV Sbjct: 73 TIHPDNSITVVDNGRGIPVAMMEKEGKPAVEVVLTVLHAGGKFGDGGGYKVSGGLHGVGV 132 Query: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVT 180 SVVNALS++L + I R+G Q Y G PQ L T +TGT + F P E Sbjct: 133 SVVNALSEQLRVEIFRDGFAWSQDYVRGAPQGQLERGEATSETGTTITFLPDDEIM-ESL 191 Query: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKED-HFHYEGGIKAFVEYLNKNKTPIHPN 239 +F++ L +RLRE +FL G+ I L D+R + F Y+GGI+ FV YLN+NK P+ Sbjct: 192 DFDFTTLEERLRETAFLTRGLRISLTDERGERRHVEFQYDGGIQDFVAYLNENKDPVQRK 251 Query: 240 IFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDK 299 I YFS+E D VEVA+QWN +QE+++ F NNI +GG+HL+GFR+A+TRT+N Y + Sbjct: 252 IVYFSSESDEGAVEVAMQWNSSYQESVFSFANNINTHEGGSHLSGFRSALTRTINKYARE 311 Query: 300 EGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAE 359 +G+ K+ + G+D REGL AV+S K+ +P+F QTK KL + ++ E +N+ L E Sbjct: 312 KGFLKERDANLAGEDVREGLTAVISAKLAEPQFEGQTKTKLGNPGMQGFTESIVNKGLDE 371 Query: 360 YLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSE 419 +L ENP DA+ V+ K + AA+AR AAR+AR++TRRK AL+ + LPGKLADC +DPALSE Sbjct: 372 FLEENPQDARSVILKAVQAAQARSAARKARDLTRRKSALENSRLPGKLADCSVKDPALSE 431 Query: 420 LYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIG 479 +++VEGDSAGGSAKQGR+R QAILPL+GKILNVE+AR DK+L + EV LITA+G G+ Sbjct: 432 IFIVEGDSAGGSAKQGRDRSTQAILPLRGKILNVERARIDKVLGNNEVQALITAIGTGV- 490 Query: 480 RDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKK 539 RD+++ +K RYH II+MTDADVDG+HIRTL+LT +R+M +++ G +YIA+PPLYK+K+ Sbjct: 491 RDDFDLEKARYHKIILMTDADVDGAHIRTLVLTLLFREMMPLIDAGFIYIAKPPLYKLKQ 550 Query: 540 GKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMER 599 GK E+YI+ D +++ +S L+ ++ A EA K + R Sbjct: 551 GKNERYIEKDSELEEMLLSDKLERFSIFDRTGAETRLTEARWKRFTRLLKQYGGWASALR 610 Query: 600 RYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNL 659 + + +++ + EA+++DE + R L E G+ + ++ E L Sbjct: 611 ALSSHDVVDFLHESGILEANVTDEGALARL-------LRQPEADGAAFSVELVGEDEVEL 663 Query: 660 FEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAF-IERGERRQPVAS 718 + +T T + + EYR++ + ++L + F I G+ R+ S Sbjct: 664 TVRSIERKTGHARTRHVR-RAMLQANEYRQLARVHDQLVQAVGTPPFDIRLGDHRETAVS 722 Query: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 F++ ++ + RG+ I R+KGLGEMN EQL ETTMDP +R + RVT++DA AA+++F+ Sbjct: 723 FDELRSRVMDMAGRGVEINRFKGLGEMNAEQLRETTMDPATRTLARVTMEDAAAAERVFS 782 Query: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 LMGD VEPRR FIEENA N+D+ Sbjct: 783 MLMGDQVEPRRNFIEENASLVTNLDV 808 >UniRef50_B1ZTK2 DNA gyrase subunit B n=194 Tax=cellular organisms RepID=B1ZTK2_OPITP Length = 861 Score = 812 bits (2096), Expect = 0.0, Method: Composition-based stats. Identities = 385/851 (45%), Positives = 519/851 (60%), Gaps = 54/851 (6%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 + +YD+S I+ L+GL+ VRKRP MYIGDT++ GLHH VFEVVDN++DEALAG I+V Sbjct: 17 AEAYDASKIQKLEGLEGVRKRPDMYIGDTNE-RGLHHCVFEVVDNSVDEALAGFASLIVV 75 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 TIH D S S++DDGRGIP +HP + A E+++T LHAGGKF +Y+VSGGLHGVG Sbjct: 76 TIHLDGSCSIEDDGRGIPVDMHPVYKIPALELVLTNLHAGGKFGKGAYQVSGGLHGVGAK 135 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTE 181 VNA+S+ E ++R GK+++ +E G+ + V G+T+KTGT + F P E F E Sbjct: 136 CVNAVSEWFEAEVRRGGKVYQMRFEQGITTQKMQVIGDTKKTGTKITFKPDPEIFKTTRE 195 Query: 182 FEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIF 241 F+YEIL+KRLREL+FLN GV I L D+R K D F++ GI FV YLN+NK +H Sbjct: 196 FQYEILSKRLRELAFLNPGVHIELADERSQKGDRFYFRDGITEFVRYLNQNKNVVHDKPI 255 Query: 242 YFSTEKDG--------IGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTL 293 FS I V+V++Q+ND + + ++ + N+I +GGTHL+GFR A+TR + Sbjct: 256 TFSDSVPNETNAALPNIVVDVSMQYNDSYNDQVFAYANSIYNIEGGTHLSGFRTALTRVV 315 Query: 294 NAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQM 353 N + K+ S TGDD REGL+AV+SVKVP+P+F QTK KL + E+ V++ + Sbjct: 316 NNFARANNLLKEKDPSITGDDVREGLVAVISVKVPEPRFEGQTKTKLSNGEIDGIVQRIV 375 Query: 354 NELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQER 413 E L Y N AK ++ K ++AARA A R T RKGAL GLPGKLADC ER Sbjct: 376 GEKLRFYFEANTNIAKRIIDKTLNAARA-REAARKARETVRKGALSGGGLPGKLADCSER 434 Query: 414 DPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITA 473 DPAL ELY+VEGDSAGGSAKQGR+R+ QAILPL+GK++NVEKAR DK+L+++E+ TLITA Sbjct: 435 DPALCELYIVEGDSAGGSAKQGRDRRYQAILPLRGKVINVEKARLDKVLANEEIRTLITA 494 Query: 474 LGCGIGRDE----YNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 G GIG E ++ DK RYH +IIMTDADVDGSHIRTLLLTF YRQM + +RG VYI Sbjct: 495 FGTGIGDHEGDGAFDGDKARYHKVIIMTDADVDGSHIRTLLLTFLYRQMRGLFDRGFVYI 554 Query: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNA 589 AQPPLYK+K+ K+EQYI +D+ +++ + + + L A A ++K+V A Sbjct: 555 AQPPLYKIKRKKREQYIDNDDQLNRILLELGSEDVVLTRIADQHVFAPAQIDKIVENLAA 614 Query: 590 TQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKF 649 +K+ + R Y A+ + L Q +T A + L D+ ++ KF Sbjct: 615 LEKLGAGVTR-YGAALSEYLDQQDHVTHALPRYIARIREGNKESHEFLRDE---AARSKF 670 Query: 650 DVHTNAEQNLFEPIVRVRTHGVDTDYPLD------------------------HEFITGG 685 + ++FE V +G T L HE Sbjct: 671 VQDHGLDADMFEQPDNVVPNGTGTASGLPVNGTTAGVNEPPRKPAATPKRITLHEIFEST 730 Query: 686 EYRRICTL------------GEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESRRG 733 E ++ + L + ++ E R + S + + + R+G Sbjct: 731 EMAKLLKAIAATGLEINRFGATEEARYLITENAGQKSESRIELHSPLEIVTEIRANGRKG 790 Query: 734 LSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIE 793 LSIQRYKGLGEMNP+QL+ETTMDPE RR+L+V++ DA AD LFT LMGD V PRR FIE Sbjct: 791 LSIQRYKGLGEMNPKQLFETTMDPEKRRLLKVSINDAAKADALFTLLMGDEVPPRRQFIE 850 Query: 794 ENALKAANIDI 804 +NAL +D+ Sbjct: 851 DNALNVQYLDV 861 >UniRef50_Q1RHT8 DNA gyrase subunit B n=702 Tax=Proteobacteria RepID=GYRB_RICBR Length = 808 Score = 805 bits (2080), Expect = 0.0, Method: Composition-based stats. Identities = 418/806 (51%), Positives = 570/806 (70%), Gaps = 12/806 (1%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 +SY + SIKVLKGL+AVRKRPGMYIGD DG+GLHHM++EVVDNAIDEALAG+C + V Sbjct: 11 SSYGADSIKVLKGLEAVRKRPGMYIGDVGDGSGLHHMIYEVVDNAIDEALAGYCDLVRVV 70 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 ++ + SV+V D+GRGIP IH EEG+SAAEVIMT LHAGGKFD NSYKVSGGLHGVGVSV Sbjct: 71 LNKNGSVTVSDNGRGIPVEIHEEEGISAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSV 130 Query: 123 VNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGET-EKTGTMVRFWPSLETFTNVTE 181 VNALS LEL I R H + +G+ +APLAV E +K GT V F+PS+ETFTN+ E Sbjct: 131 VNALSDWLELRIWRNNTEHLIRFNNGITEAPLAVVKENVDKKGTEVTFFPSVETFTNI-E 189 Query: 182 FEYEILAKRLRELSFLNSGVSIRLRDKR--DGKEDHFHYEGGIKAFVEYLNKNKTPIHPN 239 F++ I+ RLREL+FLNSGV I L D R + KE F+Y GGI+A+V+YL++ K +H Sbjct: 190 FDFSIIEHRLRELAFLNSGVKILLTDNRFEEVKEVEFYYTGGIEAYVKYLDRAKHAVHSC 249 Query: 240 IFY-FSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 I + GI +E+A+ WND + ENI CFTNNI QRDGGTHL+ F++ +TR + AY++ Sbjct: 250 IVVNADNTESGISLELAMHWNDSYHENILCFTNNIRQRDGGTHLSAFKSGLTRVITAYLE 309 Query: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 G +KKAK + +G+D REG+ V+SVKVPDPKFSSQTKDKLVSSEV+ VE + + Sbjct: 310 NTGLNKKAKNAFSGEDTREGICCVLSVKVPDPKFSSQTKDKLVSSEVRPIVENAVYTKVL 369 Query: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 E+ E+P DAK+++ KI++AA AREAAR+ARE+TRRK L+++ LPGKLADC +DPA+S Sbjct: 370 EWFEEHPADAKLIINKIMEAANAREAARKARELTRRKSVLEVSNLPGKLADCHAKDPAVS 429 Query: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 EL++VEGDSAGG+AKQGR+ K QAILPL+GKILNVE+ARFDKML S ++ TLITALG G+ Sbjct: 430 ELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERARFDKMLGSDQIGTLITALGTGV 489 Query: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 E++ +KLRYH +IIMTDADVDGSHIRTLLLTFFYR MPE++ +G++YIAQPPLYKVK Sbjct: 490 DNREFSLEKLRYHKVIIMTDADVDGSHIRTLLLTFFYRHMPELINKGYLYIAQPPLYKVK 549 Query: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598 KG E Y+K+++A+ Y + A+ ATL T + L E LE+L+S+ +++ Sbjct: 550 KGASELYLKNEQALQDYLVKSAISDATL-TLDNKEQLTNENLEELMSKVIKFNSLLDHAS 608 Query: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658 +++ +++ + L L + D ++ +R AL + LN EQ + ++V + + Sbjct: 609 KKFNRSITEILAINDLLNN-KIFDNESDSRLKKAL-NALNSLEQSPDKTDWEVLKHENKI 666 Query: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718 F + G+ L E + E+ I L + + + + + + + Sbjct: 667 EFFRF----SRGLKERKILLREQLESFEFINISKLALTIFDVFNKQLKLVVKNQEFDILT 722 Query: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 L+ +++ ++G+S+QR+KGLGEMN +QLW+TT+DP+ R +++V V + A+ +F+ Sbjct: 723 PSILLNTIIECGKKGISVQRFKGLGEMNSDQLWDTTLDPKKRTLMQVRVAEVDEAEGIFS 782 Query: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 TLMGD VEPRR FI+ NAL N+D+ Sbjct: 783 TLMGDVVEPRRQFIQSNALNVVNLDV 808 >UniRef50_Q1MQ88 DNA gyrase subunit B n=6 Tax=Bacteria RepID=Q1MQ88_LAWIP Length = 799 Score = 800 bits (2065), Expect = 0.0, Method: Composition-based stats. Identities = 367/808 (45%), Positives = 509/808 (62%), Gaps = 20/808 (2%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 + Y + SI +L+GL AVR RP MYIG TD GLHH+V+EV+DN+IDEA+AG C I Sbjct: 8 IPKDYTADSITILEGLQAVRMRPAMYIGSTDT-RGLHHLVYEVIDNSIDEAMAGFCTRID 66 Query: 61 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 V +H DNS++V+D+GRGIP IHP+EGV A +V+MT LHAGGKFD+++YKVSGGLHGVG+ Sbjct: 67 VVLHLDNSITVRDNGRGIPVDIHPKEGVPAVQVVMTKLHAGGKFDNDTYKVSGGLHGVGL 126 Query: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVT 180 S VNALS++LE+ I R G +Q Y GVP L GE++ GT +RF E F T Sbjct: 127 SCVNALSEQLEVTILRGGYRWKQKYSRGVPLENLQRIGESDNHGTTIRFKADEEIF-ETT 185 Query: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNI 240 E+ YE L +R EL++LN G+ I D+R + F EGGI FV+ +N ++ +H I Sbjct: 186 EYSYETLKRRFEELAYLNKGLEIHCTDERTSETHLFKAEGGIHQFVKDINTGESILHS-I 244 Query: 241 FYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD-K 299 + +G+ ++ ALQ+N G++EN F NNI ++GGTHLAGF+ A+TR +N Y+ + Sbjct: 245 ISRESIVEGVMIDFALQYNAGYKENTLTFANNIRTKEGGTHLAGFKTALTRAINGYIKGQ 304 Query: 300 EGYSKKAK-VSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 SKK K + +GDD REGL AV+SVK+P+P+F QTK KL +SE+ V + L Sbjct: 305 PDLSKKLKGQTLSGDDVREGLTAVLSVKLPNPQFEGQTKTKLGNSEIAGIVGGAVYTSLD 364 Query: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Y ENP D + ++ K IDAARAREAARRA+E+ RRKGAL LPGKLADCQ ++PA S Sbjct: 365 TYFQENPKDIRCIIDKAIDAARAREAARRAKELVRRKGALFDNALPGKLADCQSKNPAES 424 Query: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 EL++VEGDSAGGSAKQGRN QAILPL+GKILN+E+ RFDKML+++E+ LITA+G GI Sbjct: 425 ELFIVEGDSAGGSAKQGRNPNIQAILPLRGKILNIERTRFDKMLANKEIKALITAMGAGI 484 Query: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 G ++ + KLRY+ I+IMTDADVDG+HIRTLLLTFF+R ++ERGH+YIAQPPLY+V Sbjct: 485 GEEDTDYQKLRYYKIVIMTDADVDGAHIRTLLLTFFFRNYVGLIERGHLYIAQPPLYRVH 544 Query: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598 K E++IKDD +++ + + + T + + + + + +Q+ + Sbjct: 545 NSKSEKFIKDDPSLNDFLLHRVSSELEIQTESGKLLKGSDIITTMKQIESISQRTKDAEL 604 Query: 599 RRYPKAMLKELIYQP-TLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQ 657 + + LI P LT LS + + ++N + N Sbjct: 605 AGISENLFMLLITSPKKLTSDVLSSLEEIQLYLNTSGYNIT-------------VENESH 651 Query: 658 NLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIE-RGERRQPV 716 + + + + + +F Y + + L + FI + Sbjct: 652 EDGDRLFTIFENKNGHKTRIPADFFASKIYSSTWDVMDSLLTMCGGINFIVFHSGTSHTI 711 Query: 717 ASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQL 776 + + + E+R+G++IQRYKGLGEMNPEQLW TTMDP++R +L+VT+ DA A++ Sbjct: 712 NDLFKLYQFTLDEARKGINIQRYKGLGEMNPEQLWVTTMDPQNRTLLQVTINDAEEANET 771 Query: 777 FTTLMGDAVEPRRAFIEENALKAANIDI 804 F LMG+ VEPRR FIE NAL ++DI Sbjct: 772 FEQLMGERVEPRREFIERNALNVRDLDI 799 >UniRef50_B2URM5 DNA gyrase subunit B n=25 Tax=Bacteria RepID=B2URM5_AKKM8 Length = 852 Score = 796 bits (2055), Expect = 0.0, Method: Composition-based stats. Identities = 357/838 (42%), Positives = 506/838 (60%), Gaps = 40/838 (4%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 + Y ++ I L+GL+AVRKRPGMYIGD D+ GLHH VFEV+DN+IDE LAG+C +I + Sbjct: 19 HEYGAAQIDKLEGLEAVRKRPGMYIGDPDE-RGLHHCVFEVLDNSIDEHLAGYCSKIDIV 77 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 IH D S+S+ D+GRGIP IHP+ G+ A E+++T LHAGGKF +YK SGGLHGVG Sbjct: 78 IHVDGSISIVDNGRGIPVDIHPKFGIPAVELVLTNLHAGGKFGQGAYKYSGGLHGVGAKC 137 Query: 123 VNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGET--EKTGTMVRFWPSLETFTNVT 180 VNALS + ++R+GK ++ +E G PL G E TGT + F+P FT+ T Sbjct: 138 VNALSDWFKAEVRRDGKRYQIKFERGKTVEPLRTVGSCACEVTGTTITFFPDATIFTDTT 197 Query: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDG--KEDHFHYEGGIKAFVEYLNKNKTPIHP 238 EF+++ L RLREL+FLN G+ I L D+R+ + + F Y+ GI FV L NK I+ Sbjct: 198 EFKFDRLTTRLRELAFLNPGLVIELIDEREAPARRETFFYKDGIVEFVRQLGTNKEVINE 257 Query: 239 NIFYFSTE------------KDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFR 286 + S +D + V+V Q+N+ ++ NI CF N+I DGGTHL+GFR Sbjct: 258 DPISISGVRKVEVEYDGKKMEDDVLVDVVFQYNNTYETNILCFANSIYNGDGGTHLSGFR 317 Query: 287 AAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVK 346 A+TR +N Y G K+ S +G+D REGL+AV+SVK+P+P+FSSQTKDKLV++E++ Sbjct: 318 GALTRVINGYAKANGLLKEKDPSLSGEDVREGLVAVISVKMPNPRFSSQTKDKLVNTEIE 377 Query: 347 SAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGK 406 V + E + Y ENP AK ++ K I A A R T RK AL + GLPGK Sbjct: 378 GVVGNVVYEEIKTYFEENPAMAKKIIEKSI-TAARAREAARKARETVRKSALSIGGLPGK 436 Query: 407 LADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQE 466 LADC +RDPA EL++VEGDSAGGSAK GR+R+ QAILPL+GK+LNVEKAR DK L S+E Sbjct: 437 LADCSDRDPAKCELFIVEGDSAGGSAKMGRDRRTQAILPLRGKVLNVEKARLDKALGSKE 496 Query: 467 VATLITALGCGIGRD----EYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIV 522 + +ITA+G GIG + D++RYH IIIMTDADVDG+HIRTLLLTFF R MP++V Sbjct: 497 IQNMITAIGAGIGEGDDEASFKLDRVRYHKIIIMTDADVDGAHIRTLLLTFFCRHMPQLV 556 Query: 523 ERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEK 582 G++YIAQ PLY++ + K+E+Y++DD A+++ I +A++ TL + + + E L Sbjct: 557 RAGYLYIAQAPLYRIIRRKKEEYVQDDVALNRKLIELAVNDVTLRFADGSRSFSPEELSA 616 Query: 583 LVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEA--------DLSDEQTVTRW----- 629 ++ Q+ M+ + L++L+ +E+ + + Sbjct: 617 ILETLVNLQRYTESMQAQGGS--LEDLLSHRETNGEFPEFLVKVRCGNEEEILFFHDMEA 674 Query: 630 VNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRR 689 + A E D G+ + ++ N P R TH + + E Sbjct: 675 LTAFSEENRDLFIFGTPSEEELLENPLPEREGPSRRSITHELHEAKAITRALARLAELGI 734 Query: 690 ICTLGEKLRGLLEEDAFIERGERR-QPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPE 748 + + L E E + + P+ S L+ ++ +RG+ I R+KGLGEM+ + Sbjct: 735 PGNMIVSMDTPLFELVEGEGDKEKVTPLFSVMDILESVISIGKRGVEITRFKGLGEMDAK 794 Query: 749 QLWETTMDPESRRMLRVTVKD--AIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 L++TTMDPE R +LRV + D A+ AD++FT LMGD VEPR+ +I ++AL N+DI Sbjct: 795 DLFKTTMDPERRELLRVILNDDNAVRADEMFTILMGDVVEPRKNYIVDHALNVRNLDI 852 >UniRef50_Q2GD49 DNA gyrase subunit B n=9 Tax=cellular organisms RepID=Q2GD49_NEOSM Length = 783 Score = 795 bits (2053), Expect = 0.0, Method: Composition-based stats. Identities = 406/815 (49%), Positives = 537/815 (65%), Gaps = 48/815 (5%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 Y + SIKVLKGL+AVRKRPGMYIGDTDDG+GLH MV+EVVDN++DE+LAG+C I V Sbjct: 4 TDYTADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHQMVYEVVDNSVDESLAGYCTAIEVV 63 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 I D S+SV+D+GRG+PT +H EGVSAAEVIMT LHAGGKFD +SYKVSGGLHGVGVSV Sbjct: 64 IDVDGSISVEDNGRGMPTDMH-GEGVSAAEVIMTQLHAGGKFDQSSYKVSGGLHGVGVSV 122 Query: 123 VNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGET-EKTGTMVRFWPSLETFTNVTE 181 VNALS L+L I R+GK+H +E+G L+VTGE +KTGT+V F PS TF N TE Sbjct: 123 VNALSDWLKLTIYRDGKVHFAEFENGETVRSLSVTGECGDKTGTLVHFLPSRSTFKNTTE 182 Query: 182 FEYEILAKRLRELSFLNSGVSIRLRDKRDGK---EDHFHYEGGIKAFVEYLNKNKTPIHP 238 + L R RELSFLN G+ I L D R G + F GG + FV YL+++K PIH Sbjct: 183 VSFSTLENRFRELSFLNPGLRISLLDMRKGSSTGKVVFFSSGGTEEFVAYLDRSKQPIHS 242 Query: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 D I ++V++QWND + EN+ CFTNNI Q+DGGTHLA R+AMTR ++ Y+ Sbjct: 243 TPIRVVGGVDSIAIDVSMQWNDSYYENVLCFTNNIKQKDGGTHLAALRSAMTRVMHNYIV 302 Query: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 KE KK KV +G+D REGL A++SVK+PDPKFSSQTK+KL+SSEVK +E+ +++ LA Sbjct: 303 KENLIKKDKVVVSGEDVREGLSAILSVKLPDPKFSSQTKEKLISSEVKPVIEKIVSDALA 362 Query: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 +L ENP+ A+++ K++++A AREAA++AR++TRRKG L++ LPGKLADCQE+ P LS Sbjct: 363 SWLEENPSSARVIARKVVESALAREAAKKARDLTRRKGGLEITTLPGKLADCQEKSPELS 422 Query: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 EL +VEGDSAGGSAKQGR+RK QA+LPL+GKILNVEK RF K++ S E+ LI ALG I Sbjct: 423 ELLIVEGDSAGGSAKQGRDRKTQAVLPLRGKILNVEKTRFHKVIGSAEIGNLIAALGTSI 482 Query: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 G +E+N DK+RYH IIIMTDADVDG HIRTLLLTFF+R IVERG++YIAQ PLYKV Sbjct: 483 GEEEFNIDKIRYHKIIIMTDADVDGLHIRTLLLTFFFRYARPIVERGYLYIAQTPLYKVM 542 Query: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598 + + Y++DD A+++Y + + G L A+ G++L+++V + K++ + + Sbjct: 543 RKGADVYLRDDAALEEYLLDRIVKGKELEG-ANGNVYTGQSLKRVVQQCLVLSKILEKFD 601 Query: 599 RRYPKAMLKELIYQPTLTEADLSDEQ---------TVTRWVNALVSELNDKEQHGSQWKF 649 R P +L+ + + L E+ TV R ++L E G + ++ Sbjct: 602 YRIPLEILEVVFLCGEEADPHLLAERVALISFGAWTVVREDSSLFFERT---FQGLRNRY 658 Query: 650 DVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIER 709 + E + ++R D YP F Sbjct: 659 EYSPLFVPEDLEKMAKIREAISDIFYPGFARF---------------------------- 690 Query: 710 GERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKD 769 S + +R G+ +QR+KGLGEMNPEQLW TT+DP +R + +VT+++ Sbjct: 691 --NNGEYHSILAFIRDADSVARAGMVLQRFKGLGEMNPEQLWSTTLDPSNRTIFKVTIEE 748 Query: 770 AIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 A ADQ+ + LMGDAV PRR FI NAL A+NID+ Sbjct: 749 AAVADQMCSMLMGDAVGPRRDFIVNNALNASNIDV 783 >UniRef50_O33367 DNA gyrase subunit B n=6 Tax=Bacteria RepID=GYRB_MYXXA Length = 815 Score = 794 bits (2050), Expect = 0.0, Method: Composition-based stats. Identities = 390/813 (47%), Positives = 514/813 (63%), Gaps = 26/813 (3%) Query: 4 SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTI 63 Y + SI L+G +AVRKRPGMYIGDT GLH +V+EVVDNA+DE+LAGHC +I V I Sbjct: 17 EYGTDSITKLEGREAVRKRPGMYIGDT-MAYGLHKLVYEVVDNAVDESLAGHCTDIEVVI 75 Query: 64 HADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 H D S+SVQD+GRGIP G HP+ G EV++T LHAG KF + +YKVSGGLHGVGV+ Sbjct: 76 HVDGSLSVQDNGRGIPVGPHPKFPGKDTLEVVLTELHAGSKFGNGAYKVSGGLHGVGVTC 135 Query: 123 VNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEF 182 VN LS+ ++ + R G ++ Q Y GVP P G T+K GT + F P + EF Sbjct: 136 VNFLSEWFKVRVHRNGIVYEQAYAQGVPDTPPREVGTTDKRGTHIAFKPDATVM-ELVEF 194 Query: 183 EYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFY 242 +E L++RLREL+FLN+G+ I +RD+R KE F ++GGI +FVEYLNK+K +H Sbjct: 195 NFETLSQRLRELAFLNAGLHIVVRDERTNKEHDFKFDGGISSFVEYLNKSKQTLHDKPIS 254 Query: 243 FSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGY 302 FSTE++G+ +++A+QWNDG+ E IY F NNI +GG+HL+GF+AA+TRTLN+Y +K Sbjct: 255 FSTEREGVMLDIAMQWNDGYDERIYTFANNINTHEGGSHLSGFKAALTRTLNSYAEKGSL 314 Query: 303 SKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLL 362 K K + TG+DAREGL AV+SVK+ +P+F QTK KL +SEVK VEQ +N+ L +L Sbjct: 315 WKDLKETPTGEDAREGLSAVISVKLTNPQFEGQTKTKLGNSEVKGLVEQMVNDQLGSFLE 374 Query: 363 ENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYL 422 E P AK VV KI DA RAR AAR+ARE RRKG LD GLPGKLADCQ RDP SELY+ Sbjct: 375 ETPMVAKKVVAKIGDACRARLAARKARETVRRKGVLDGGGLPGKLADCQIRDPNESELYI 434 Query: 423 VEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDE 482 VEGDSAGGSAKQGR+R+NQAILPL+GKILNVEK +ML+S E+ TLITALG GIG ++ Sbjct: 435 VEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKL-LREMLTSAEIVTLITALGNGIGAED 493 Query: 483 YNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQ 542 Y+P+K RYH I +MTDADVDGSHIRTLLLT + R YKV + K+ Sbjct: 494 YDPEKARYHRIFLMTDADVDGSHIRTLLLTSSSGRCRSSCRRAISTSRSRRSYKVTRNKK 553 Query: 543 EQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYP 602 +QY+KD+ A+++Y + IA + A + T L G L+ L+ + ++ + + +R Sbjct: 554 DQYVKDEHALNEYLLKIASEHARVLT--PGGELGGAELKALLEKVITYEERLEKQAKRRD 611 Query: 603 KAMLKELIYQPTLTEADL------SDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAE 656 ++ L+ L+ L + + + W T Sbjct: 612 ARVVDALVQGARLSAETLTGRGCPGGGGEGRLMTPSSAACRTCWAACATSWCRTPSTTPR 671 Query: 657 QNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTL-----GEKLRGLLEEDAFIERGE 711 P P T RR T E LRG + RG Sbjct: 672 SWCSTP---------TRMEPCGRRCSTTPSCRRRSTWSCRLCAEHLRGAGQGAVQGPRGR 722 Query: 712 RRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI 771 V S ++ L + K+++RGL +QRYKGLGEMNPEQLW+TTM+P +R +L+V V+DA+ Sbjct: 723 GEITVFSVQEVLAAVRKDAQRGLGLQRYKGLGEMNPEQLWDTTMNPATRTLLQVRVEDAV 782 Query: 772 AADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 +D++F+ LMG+AVEPRR FIE NAL N+DI Sbjct: 783 ESDEIFSLLMGEAVEPRREFIERNALDVQNLDI 815 >UniRef50_B5YGU1 DNA gyrase subunit B n=9 Tax=Bacteria RepID=B5YGU1_THEYD Length = 759 Score = 784 bits (2025), Expect = 0.0, Method: Composition-based stats. Identities = 398/806 (49%), Positives = 538/806 (66%), Gaps = 68/806 (8%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 SY + IK+LKGL+ VR RP MYIG T GLHH+V+EVVDN++DEALAG C +I V Sbjct: 18 ESYKAEHIKILKGLEGVRTRPAMYIGSTG-VEGLHHLVYEVVDNSVDEALAGFCNKIEVR 76 Query: 63 IHADNSVSVQDDGRGIPTGIHPE--EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 +H D S SV D+GRGIPT IHP+ E +A E+++T LHAGGKF+ +YKVSGGLHGVG+ Sbjct: 77 LHTDGSCSVIDNGRGIPTEIHPDDPEKRTALEIVLTELHAGGKFESKAYKVSGGLHGVGL 136 Query: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVT 180 SVVNALS+ LE+ +QR+GK+ RQ Y G+P + V G+TEKTGT ++F E F VT Sbjct: 137 SVVNALSEWLEVEVQRDGKVVRQKYCRGIPVTGVEVIGQTEKTGTKIKFKADPEIF-EVT 195 Query: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNI 240 EF EILA R +ELS+LN G+ I L D+RDG + F EGGI +FVE LNK K P+HP Sbjct: 196 EFSREILAHRFKELSYLNRGLKIILIDERDGYVEEFIKEGGIVSFVEDLNKGKKPLHPKP 255 Query: 241 FYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKE 300 Y + +KD + VE+A+Q+N+G+ E I F NNI ++GGTHL GF++A+TRT+N+Y Sbjct: 256 IYITGQKDRVIVEIAIQYNEGYSEEILTFVNNINTKEGGTHLVGFKSALTRTINSYAMLN 315 Query: 301 GYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEY 360 G K+ K S +G+D REG++ V+SVK+P+P+F QTK KL +SEVK VE +NE L+ + Sbjct: 316 GLLKEGKESLSGEDVREGIVGVISVKIPEPQFEGQTKMKLGNSEVKGIVETILNEKLSRW 375 Query: 361 LLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSEL 420 L ENP AK ++ K DAARAREAA++A+E+TRRKG L+ LPGKLADC E+DP+ +EL Sbjct: 376 LEENPNYAKRIIEKAKDAARAREAAKKAKELTRRKGILEDTTLPGKLADCTEKDPSHAEL 435 Query: 421 YLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR 480 ++VEGDSAGGSAKQ R+R++QA+LPL+GKILNVEKAR DKML+S+E+ TLITA+G GIG+ Sbjct: 436 FIVEGDSAGGSAKQARDRRSQAVLPLRGKILNVEKARIDKMLTSEEIKTLITAIGGGIGK 495 Query: 481 DEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKG 540 + + P+ +RYH II+MTDADVDG+HIRTLLLTFFYRQM ++E+G++YIAQPPLY++K+G Sbjct: 496 EHFEPENVRYHKIILMTDADVDGAHIRTLLLTFFYRQMLPLIEKGYLYIAQPPLYRIKRG 555 Query: 541 KQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINR--ME 598 K E+YI+ ++ ++ + IA+D + + ++ KL+ EY + R Sbjct: 556 KWERYIQTEDEFHEFLMDIAVD--EISFIEESELSTKKSFLKLLFEYGRILENFERKGFS 613 Query: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658 Y + +L+ L +Q DL D +T+ Sbjct: 614 PFYIENILETLQFQQDNQIVDLRDFETLQNI----------------------------- 644 Query: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718 FE I ++ D +Y + RI T K + L E Sbjct: 645 -FEKIKLIQGIREDKNYII-----------RIKTEAVKTKSLWE---------------- 676 Query: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 + ++ ++GL+IQRYKGLGEMNPEQLWETTMDPE R +L+VTV+DA A+++FT Sbjct: 677 ---LYNKVMDAVKKGLTIQRYKGLGEMNPEQLWETTMDPEKRTLLQVTVEDAQRANEIFT 733 Query: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 LMGD VEPR+ FI +AL+ N+DI Sbjct: 734 ILMGDEVEPRKEFIVRHALEVRNLDI 759 >UniRef50_A6DH73 DNA gyrase subunit B n=7 Tax=cellular organisms RepID=A6DH73_9BACT Length = 838 Score = 777 bits (2006), Expect = 0.0, Method: Composition-based stats. Identities = 368/835 (44%), Positives = 524/835 (62%), Gaps = 37/835 (4%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 + Y + SI V+KGL+AVRKRP MYIGDT++ GLHH+V+EVVDN+IDEALAGHC I V Sbjct: 9 AGEYGADSISVMKGLEAVRKRPSMYIGDTNE-RGLHHLVYEVVDNSIDEALAGHCNNITV 67 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 +H DNSV+V DDGRGIP IH EEG+ A E+++T LHAGGKFD +SYKVSGGLHGVGVS Sbjct: 68 KLHIDNSVTVVDDGRGIPVNIHEEEGIPAVELVLTKLHAGGKFDKDSYKVSGGLHGVGVS 127 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTE 181 VNALS+ +E+ + R+ +H +E G+ + L G T TGT V F P E FT Sbjct: 128 CVNALSEWMEVKVHRDETLHFIRFERGLTETSLKTIGHTNITGTEVIFKPDFEIFTETLI 187 Query: 182 FEYEILAKRLRELSFLNSGVSIRLRDKRD---GKEDHFHYEGGIKAFVEYLNKNKTPIHP 238 ++++ILAKRLREL+FLN G++I D+R + + F++ GGI FV++LN KT + Sbjct: 188 YKWDILAKRLRELAFLNPGITINFIDERAEDGERRETFYFPGGIGEFVKHLNDGKTVVTD 247 Query: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 + FSTEKDG+ +V+ Q++DGFQENIY + NNI +GGTHLAGF+ A+T ++N+YM Sbjct: 248 TV-TFSTEKDGVTADVSFQYHDGFQENIYSYCNNIHTIEGGTHLAGFQTALTASINSYMK 306 Query: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 + K + + +G D REGL A++SVKVP+P+F QTK KL ++EV+S V ++ Sbjct: 307 NDSKFK-NEKNVSGTDVREGLTAIISVKVPEPQFEGQTKTKLGNNEVRSIVRAIVSTSFN 365 Query: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 E+L ENP AK+VV K + A RA AA RAR++ R+ L+ GKL+ C ++P Sbjct: 366 EFLEENPKAAKVVVEKALLANRASAAALRARQLIRKDNVLEGFADAGKLSGCSSKNPDEC 425 Query: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 E+++VEGDSAGGSAKQGRN + QAILPL+GK++NVEKAR DK+ ++ E+ +LI+A+GCG+ Sbjct: 426 EIFIVEGDSAGGSAKQGRNSEVQAILPLRGKLINVEKARIDKVFANTEIGSLISAIGCGV 485 Query: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 G +E++ +K+RY I+IMTDADVDGSHI TLLLTFF+RQM ++E G++Y+AQPPLYKV Sbjct: 486 G-NEFDVEKIRYKKIVIMTDADVDGSHIMTLLLTFFFRQMKPLIEAGYIYVAQPPLYKVV 544 Query: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598 + K+E+YIK+D ++ + + + +DG TL + L+ ++++ T + +E Sbjct: 545 RRKREEYIKNDAMLNNFLLELGVDGITLENKLAGNTLSPRETNEILALIKRTLAVGKGLE 604 Query: 599 RRYP--KAMLKELIYQPTLTEADLS---DEQTVTRWVNALVSELNDKEQHGS----QWKF 649 + L+ ++ +L A + D+ T + + EL + Sbjct: 605 NHGVTLETYLQHVLEDGSLPIARVGVREDDGTYSIYFPTSQEELAQIIDDATERLKPVIT 664 Query: 650 DVHTNAEQNL--------------------FEPIVRVRTHGVDTDYPLDHEFITGGEYRR 689 V T+AE P + V T E + Sbjct: 665 FVDTDAESETIEGEEVLEGELVEEEAEEVGIHPSIEVNELHEKTLIEEIREKLETVS-LT 723 Query: 690 ICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQ 749 + E L E + G P+ + Q + + E +GL +QRYKGLGEMN +Q Sbjct: 724 LQHFLEPEDALAEPIFNLTDGNNDTPIFTLIQLFEAIKDEGSQGLKLQRYKGLGEMNADQ 783 Query: 750 LWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 LWETTMDP R +L+VT++DA+ A+++F+ LMGD VEPRR FIE+ + +D+ Sbjct: 784 LWETTMDPTRRDLLQVTMEDAVEAERMFSLLMGDVVEPRRHFIEKYSTTLKELDV 838 >UniRef50_C3XDF7 DNA gyrase subunit B n=5 Tax=Campylobacterales RepID=C3XDF7_9HELI Length = 775 Score = 766 bits (1978), Expect = 0.0, Method: Composition-based stats. Identities = 357/805 (44%), Positives = 520/805 (64%), Gaps = 36/805 (4%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 + Y + +IKVLKGL+AVRKRPGMYIGDT+ GLHHM++EVVDN+IDEA+AG CK I + Sbjct: 5 TKEYLADNIKVLKGLEAVRKRPGMYIGDTNTN-GLHHMIYEVVDNSIDEAMAGFCKNIKI 63 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 T+ S ++DDGRGIP +HP E + AA V++TVLHAGGKFD ++YKVSGGLHGVGVS Sbjct: 64 TLTDKGSAIIEDDGRGIPVDMHPTENMPAATVVLTVLHAGGKFDKDTYKVSGGLHGVGVS 123 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTE 181 VVNALS KL + I + KI++Q +E G+P L + GET+K GT + F+P E +TE Sbjct: 124 VVNALSCKLIMTIYKNNKIYKQEFEKGIPTTELEIIGETKKHGTTIEFFPDPEIM-EITE 182 Query: 182 FEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIF 241 F+ IL +R +E+++L G+ IR +D+RDG + FH+EGG+ F+E +N K + I Sbjct: 183 FDSNILTRRFKEMAYLTHGIKIRFKDERDGSDTTFHFEGGLSQFIEDIN--KKTLITQIL 240 Query: 242 YFSTEKD--GIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDK 299 F ++ +E+AL +N+G+ E + F NNI DGGTH AGFRA ++R + Y++ Sbjct: 241 SFEATENEYDSEIEIALAYNEGYDEKVLSFVNNIRTPDGGTHEAGFRAGLSRAILNYIEA 300 Query: 300 EGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAE 359 +++ V GDD REGL+A+V+ K+ DP+F QTK KL SS VK V++ E +++ Sbjct: 301 NANTREKDVKVLGDDVREGLVAIVATKIMDPQFEGQTKGKLGSSFVKGIVQKLTYEKISK 360 Query: 360 YLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSE 419 + ENPT AK+++ K++ AAR REAA+RAR++TR+ + ++ LPGK ADCQ +DP+ E Sbjct: 361 FFEENPTQAKLIMQKVLIAARGREAAKRARDLTRKDNKVSVSTLPGKFADCQSKDPSECE 420 Query: 420 LYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIG 479 +YLVEGDSAGGSAKQGR+R+ QAILPL+GKILNVEK+R D +L S+E+ +ITA GCGIG Sbjct: 421 IYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKSRLDTILKSEEIKNMITAFGCGIG 480 Query: 480 RDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKK 539 DE+N +KLRYH IIIMTDADVDGSHI+TLL+TFFYR +V+ G++YIAQPPLYK K+ Sbjct: 481 -DEFNEEKLRYHKIIIMTDADVDGSHIQTLLMTFFYRYFKPLVQGGYIYIAQPPLYKYKR 539 Query: 540 GKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMER 599 K+E Y+KDD+A+ + I ++ L +++ ++++N +ER Sbjct: 540 NKKEVYLKDDKALSDFLIENGIEHFNFKGIGHN------ELLQILKIIAHYRQLVNDLER 593 Query: 600 RYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNL 659 RY ++ ++ E D D +++++ + + + + + NA+ NL Sbjct: 594 RYS---VQYVLRYLVENELDTHDLESLSKNIESYLLSKQYNVLKKHIDEVSITLNAQTNL 650 Query: 660 FEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASF 719 +++ + I+ E +RI + +E E + + Sbjct: 651 GITEIKITRNLFHD--------ISFKECKRIYQKITE--------RELEFLEGKDIITGL 694 Query: 720 EQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTT 779 E+ + K+ I RYKGLGEMN E+LWETTM P++R +++V ++D AD++F Sbjct: 695 EEIEEATRKKG----DISRYKGLGEMNKEELWETTMSPQNRTLVQVKIEDDEMADEMFNI 750 Query: 780 LMGDAVEPRRAFIEENALKAANIDI 804 MGD VEPRR +I+++A N+D+ Sbjct: 751 FMGDEVEPRRQYIQKHARDVKNLDV 775 >UniRef50_D2R8B1 DNA gyrase, B subunit n=80 Tax=Bacteria RepID=D2R8B1_9PLAN Length = 830 Score = 762 bits (1968), Expect = 0.0, Method: Composition-based stats. Identities = 358/825 (43%), Positives = 500/825 (60%), Gaps = 29/825 (3%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 Y++ SIK L L+ VR RP MYIGD GLHH+V+EVVDN+IDEA+AGH K++ V Sbjct: 12 KDYNAESIKHLSDLEHVRLRPAMYIGDI-TARGLHHLVYEVVDNSIDEAMAGHAKQVSVI 70 Query: 63 IHADNSVSVQDDGRGIPTGIHPE------EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 116 ++ D SV+V+DDGRGIP H + VS E +MT L GGKFD +SYK SGGLH Sbjct: 71 VNTDGSVTVEDDGRGIPVERHEQLSASEGRDVSTLEGVMTKLKFGGKFDKDSYKTSGGLH 130 Query: 117 GVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETF 176 GVGV+VVN LSQ E+ + R GKI++Q YE G P P+ G T++TGT F P F Sbjct: 131 GVGVTVVNFLSQWAEVQVCRGGKIYQQSYETGAPTGPVREIGSTDRTGTKTTFKPDGTIF 190 Query: 177 TNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPI 236 T+++Y+IL KRL+EL+FLNSGV I+ +D+R+G+ F YE GI F+E+LN+ I Sbjct: 191 -QTTKYQYDILHKRLQELAFLNSGVRIKFKDERNGEGAEFCYERGIIEFIEHLNRASDVI 249 Query: 237 HPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAY 296 H ++ Y E D +G E+ALQ++ + EN++ + NNI +GGTH++GFR+A+TRTLNAY Sbjct: 250 HSDVIYLRGEVDTVGFEIALQYSAEYTENLHSYVNNIHTVEGGTHVSGFRSALTRTLNAY 309 Query: 297 MDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNEL 356 KEG K ++ TGDD REGL AV+SV+V P+F QTK KL + EV V +NE Sbjct: 310 GKKEGLFK--DITPTGDDFREGLTAVISVRVAHPQFEGQTKTKLGNGEVDGIVAGAVNEF 367 Query: 357 LAEYLLENPTDAKIVVGK-IIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDP 415 LA++L ENP AKI+V K ++ A A + + RK AL GLPGKL DC ++ Sbjct: 368 LAKFLEENPKTAKIIVRKGVLAAEAREAARKAKEVLRSRKNALGGGGLPGKLRDCISKEM 427 Query: 416 ALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALG 475 ELYLVEGDSAGGSA+ GR R QAILPL+GKI+N K+R DK+L+++EV ++I A+G Sbjct: 428 ERCELYLVEGDSAGGSAEGGRLRDFQAILPLRGKIINAYKSREDKVLANEEVQSMIQAIG 487 Query: 476 CGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLY 535 GIG E + K RY+ IIIMTDADVDGSHIRTLLL FFYRQM +V GHVY+AQPPL+ Sbjct: 488 TGIGA-EIDLTKRRYNKIIIMTDADVDGSHIRTLLLCFFYRQMYSLVANGHVYVAQPPLF 546 Query: 536 KVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMIN 595 +V+ K+ Y++ DE M +S + L + G+ ++K+ + + + Sbjct: 547 RVRSKKETYYVQTDEEMRSQLLSRGIGDTEL-DLQNGTKFVGDDMKKIAGILASMEDALV 605 Query: 596 RMERRYPKAMLKELIYQPTLT------------EADLSDEQTVTRWVNALVSELNDKEQH 643 +ERR L + L + + V L SEL K Sbjct: 606 ALERRGISLKLHATRADVNTGALPVVHLFIGSRDYWLRSAEEINAKVQELESELKKKIIF 665 Query: 644 GSQWKFDV--HTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYR-RICTLGEKLRGL 700 G + T+A + E +R + + ++ Y + L + R Sbjct: 666 GEKVVEAAPGATDAPPAVDENAIRAYSVELHEVKTINAGLSQLKPYSIDLAALIPQERTG 725 Query: 701 LEED-AFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPES 759 +E + RGE P+ + + + ++G+S+ R+KGLGEMN E+L +TT+DP++ Sbjct: 726 TDEPRYILRRGENEIPLKELRTLVASIREMGQKGMSVTRFKGLGEMNAEELRDTTLDPKN 785 Query: 760 RRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 R +++V+++DA AAD +F LMG+ VEPRR FIE +AL+ N+D+ Sbjct: 786 RTLVQVSMRDAGAADDMFRVLMGEKVEPRRQFIETHALEVRNLDV 830 >UniRef50_A6G5S5 DNA gyrase subunit B n=11 Tax=Bacteria RepID=A6G5S5_9DELT Length = 872 Score = 757 bits (1955), Expect = 0.0, Method: Composition-based stats. Identities = 411/842 (48%), Positives = 531/842 (63%), Gaps = 46/842 (5%) Query: 5 YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIH 64 YD SSI L+GL+AVRKRPGMYIGDTD TGLH MVFE++DN+IDEALAGHCK+I + IH Sbjct: 35 YDESSISHLEGLEAVRKRPGMYIGDTD-VTGLHKMVFEILDNSIDEALAGHCKQIQIVIH 93 Query: 65 ADNSVSVQDDGRGIPTGIHPEEG--VSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 D S+SV+DDGRGIPTG EG V AA + T LH GGKFD+ +YKVSGGLHGVGV+V Sbjct: 94 EDESISVEDDGRGIPTGPMEVEGKMVPAAIAVFTKLHVGGKFDNAAYKVSGGLHGVGVTV 153 Query: 123 VNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEF 182 VNALS LEL I+REGK+ +E G L V GETE GT V F +T Sbjct: 154 VNALSDWLELEIKREGKVFTARFERGEVARELDVVGETEARGTKVTFHADPLIYTG-VRV 212 Query: 183 EYEILAKRLRELSFLNSGVSIRLRDKR------DGKEDHFHYEGGIKAFVEYLNKNKTPI 236 +++ L+ R RELS+L GV+I L D R +E F EGG+ +FVE L +T I Sbjct: 213 DFDTLSSRFRELSYLTEGVNITLTDLRPTINGEKKREQSFDGEGGVASFVELLTAKRTRI 272 Query: 237 HPNI-------FYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 I F F + +GV+VALQW D + E ++C+TNNI RDGGTHL G R ++ Sbjct: 273 GAMIELRSQVPFEFEGQDHELGVQVALQWTDAYHEMVHCYTNNIANRDGGTHLTGLRTSL 332 Query: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 TR +N Y + K K S G+D REGL+A++SVK PDPKF+SQTK+KLVSSEV + V Sbjct: 333 TRVVNGYAGDKNLLKGHKGSLAGEDVREGLVAIISVKHPDPKFNSQTKEKLVSSEVTALV 392 Query: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 + E L+ + E P DAK+VV K + AARAR AAR+ARE RKG LD LPGKLAD Sbjct: 393 GTAVTEALSRHFEEKPKDAKLVVEKALLAARARAAARKARETITRKGVLDGLSLPGKLAD 452 Query: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 CQE+DP L+EL++VEGDSAGGSAKQGR+RK QAILPL+GKILNVEKAR DK+LSSQE+ T Sbjct: 453 CQEKDPELAELFIVEGDSAGGSAKQGRDRKVQAILPLRGKILNVEKARIDKILSSQEIVT 512 Query: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 LITALG GIG D Y+ DKLRYH IIIMTDADVDGSHIRTLLLTFF+R EI+ERG++Y+ Sbjct: 513 LITALGTGIGEDTYSIDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRHFVEIIERGYLYV 572 Query: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNA 589 AQPPLYKVK GK+E+YIK++ A+D++ +S A+ L A + E L ++ + Sbjct: 573 AQPPLYKVKAGKKERYIKNEGALDEFIVSNAVADLEL--EIGGAAASKEVLAEVANAGIR 630 Query: 590 TQKMINRMERRYPKAMLKELIYQ----------------PTLTEADLSDEQ--------T 625 ++ +ER + + +L+ ++ A + Sbjct: 631 YNNVLRSLEREHRRGILEGILGAIEARGWEAVEAAFEQGDDAFLAAMGQAVVEAAVPTMP 690 Query: 626 VTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVR--VRTHGVDTDYPLDHEFIT 683 +T+ +L L++ E + + ++R V + GV + + + Sbjct: 691 LTKVAASLRKVLDEVEAPAEGEGDEGEGEVQAARERTVLRFAVLSDGVTVNEDVGLPLLR 750 Query: 684 GGEYRRICTLGEKLRGLLEEDAFIERGERRQ-PVASFEQALDWLVKESRRGLSIQRYKGL 742 E R + + +L E + + S Q +D + + R GLSIQRYKGL Sbjct: 751 STEIRELLRIRAELAARGEGAIKLRKKGDTIAEPKSLMQVIDHVGEVGRSGLSIQRYKGL 810 Query: 743 GEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANI 802 GEMNP+QLWETTMDPE+R +L++ + + AD++FT LMGD V PRR FI ENAL N+ Sbjct: 811 GEMNPDQLWETTMDPENRELLQIKIAEKDIADEVFTVLMGDEVAPRREFITENALNTRNL 870 Query: 803 DI 804 D+ Sbjct: 871 DV 872 >UniRef50_C5B4P3 DNA gyrase, subunit B n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B4P3_METEA Length = 816 Score = 750 bits (1935), Expect = 0.0, Method: Composition-based stats. Identities = 381/814 (46%), Positives = 510/814 (62%), Gaps = 28/814 (3%) Query: 5 YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIH 64 YD+SSI+VL+GL+AVRKRPGMYIGDT+DGTG HHMV+EVVDN IDE LAGH + VT++ Sbjct: 10 YDASSIQVLEGLEAVRKRPGMYIGDTNDGTGFHHMVWEVVDNGIDECLAGHADRVTVTLN 69 Query: 65 ADNSVSVQDDGRGIPTGIHPEE-GVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVV 123 AD SV+V D+GRGIP HP+ G SAAE+IMTVLHAGGKFD NSYKVSGGLHGVGVSVV Sbjct: 70 ADGSVTVVDNGRGIPVDPHPKYPGKSAAEIIMTVLHAGGKFDQNSYKVSGGLHGVGVSVV 129 Query: 124 NALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVTEF 182 NALS LEL I R G+ H +EHG P P+ G+ + + GT V F PSL TFT V EF Sbjct: 130 NALSSLLELTIWRGGREHYMAFEHGEPAGPIRDVGDAKGRRGTSVTFTPSLRTFTGVVEF 189 Query: 183 EYEILAKRLRELSFLNSGVSIRLRDKRDGKED--HFHYEGGIKAFVEYLNK--NKTPIHP 238 ++ +RLREL+FLNSGV I D+R D +YEGG+ +V Y+++ + + Sbjct: 190 SAAVIERRLRELAFLNSGVRIVFHDRRVKDVDPVEMYYEGGVGEYVGYIDRTAGRDRVIA 249 Query: 239 NIFYFSTEKD----------GIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAA 288 TE+ +G+EVALQWND E++ FTNNIPQ DGGTH+ GF+ A Sbjct: 250 RPIVVRTERSVEVEGNPGPIPVGIEVALQWNDSTTESVLPFTNNIPQTDGGTHVQGFKTA 309 Query: 289 MTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSA 348 +TR+ AY+D+ K K +GDD REGL A+VSVK+PDPKF+SQTK KLVS+EV Sbjct: 310 LTRSFMAYVDRNPL--KTKTGLSGDDLREGLTAIVSVKLPDPKFASQTKAKLVSNEVSGP 367 Query: 349 VEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLA-GLPGKL 407 V+ + E LA +L ENP DA+ V+ K ++AA AREAA+RAREM RRK LD LPGKL Sbjct: 368 VQSAVGEALATWLDENPADARKVIDKAVEAAAAREAAKRAREMVRRKTVLDDITSLPGKL 427 Query: 408 ADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEV 467 ADC+ERDP+ SE+ +VEGDSAGGSAKQGR+ + QA+LPL+GKILN E AR D+++ + V Sbjct: 428 ADCRERDPSKSEILIVEGDSAGGSAKQGRDSEFQAVLPLRGKILNTETARLDRIMKNAAV 487 Query: 468 ATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHV 527 TL+ ALGCGIG+ ++PDK+RYH IIIMTDADVDG+HIRTLLL FF+R MPE++ RG V Sbjct: 488 GTLVKALGCGIGKGSHDPDKVRYHRIIIMTDADVDGAHIRTLLLAFFFRHMPELINRGFV 547 Query: 528 YIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEY 587 Y A+PPLY ++K ++ +++DD A+D+ + + +G A L+G L + Sbjct: 548 YKAEPPLYSIEKKGRKTFLRDDVALDRELLRLGSEGIAFRR-ADGAVLSGVDLAVAAEQA 606 Query: 588 NATQKMINRMERRYP-KAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQ 646 A ++ ++ + + EL+ L D++ + R + + + S+ Sbjct: 607 KADARLFAAIDADVGLRPLADELVVSGWLDPVLWQDDEAMLRLGAEISARMPS-MMPASR 665 Query: 647 WKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAF 706 W + +R GV + + G + +++ + A Sbjct: 666 WTSEAEAE------GLRMRWTVKGVGQERLVPRALCEGAVAHTLVRRRQQIAQVYGAGAA 719 Query: 707 IERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVT 766 I PV D + + +GL+I RYKGLGEM +QL ETT+DP +R ++++ Sbjct: 720 ILGPAGEIPVPGPSSLFDHVRELGGKGLTIGRYKGLGEMTAQQLSETTLDPTARSIVQIR 779 Query: 767 VKDAIAADQLFTTLMGDAVEPRRAFIEENALKAA 800 V+DA AA LMG EPR+ +E Sbjct: 780 VEDAEAARAKVDQLMGSKSEPRKHLLETRGHLVE 813 >UniRef50_D0RQH0 DNA gyrase subunit B n=2 Tax=Bacteria RepID=D0RQH0_9RICK Length = 834 Score = 742 bits (1916), Expect = 0.0, Method: Composition-based stats. Identities = 395/840 (47%), Positives = 535/840 (63%), Gaps = 50/840 (5%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Y + SIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHC I+V Sbjct: 8 KTEYGADSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCDTIVV 67 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 I+ DNSVSV D+GRGIP IH E +SAAEVIMT LHAGGKFD +YKVSGGLHGVGVS Sbjct: 68 KINKDNSVSVSDNGRGIPVEIHKTEKISAAEVIMTQLHAGGKFDHKTYKVSGGLHGVGVS 127 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTE 181 VVNALS+ L++ I R+GK + +E+G+ +APL G+++ GT V F PS E FT+ T+ Sbjct: 128 VVNALSKSLKVDIFRDGKKYFVEFENGITKAPLKEIGKSDLKGTNVTFLPSSEIFTD-TK 186 Query: 182 FEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDH--FHYEGGIKAFVEYLNKNKTPIH-- 237 F IL KRL+EL++LN G++I+L D+R K F ++GGIK FV+ LNK K I Sbjct: 187 FNLSILEKRLKELAYLNKGLNIQLSDERKEKAKILNFKFDGGIKEFVKDLNKLKNKIKNE 246 Query: 238 ------PNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTR 291 YF + K+ I VE AL WN + EN+ CFTNNIPQ+DGGTHL GFR ++TR Sbjct: 247 DSQFTLEEPLYFQSNKNDIDVECALLWNSSYNENVLCFTNNIPQKDGGTHLLGFRNSITR 306 Query: 292 TLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQ 351 +N Y + G KK KV+ GDD REGLI V+SVKVPDPKFSSQTK+KLVSSEV+ VE Sbjct: 307 LINKYANDFGLLKKDKVTIVGDDVREGLICVLSVKVPDPKFSSQTKEKLVSSEVRPVVET 366 Query: 352 QMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQ 411 NE ++ + +NP AK ++GKII AA ARE AR+ARE RRK A+D+ LPGKLADCQ Sbjct: 367 ITNEKISLWFDQNPKIAKTIIGKIIQAAVAREVARKARESVRRKNAIDITSLPGKLADCQ 426 Query: 412 ERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE----------KARFDKM 461 D +EL++VEGDSAGGSAKQ RNR+ QA+LPL+GKILN K F KM Sbjct: 427 SNDINKTELFIVEGDSAGGSAKQARNREFQAVLPLRGKILNTFVEAKNNSPDVKKVFSKM 486 Query: 462 LSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFF-YRQMPE 520 LSS E+ TLI A+G G+ + + +KLRY I+IMTDADVDGSHIRTLLLTFF + E Sbjct: 487 LSSNEIVTLINAIGTGV--EPFELEKLRYGKIVIMTDADVDGSHIRTLLLTFFNNKPFNE 544 Query: 521 IVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGA--------TLHTNASA 572 ++++GH+YIAQPPLYK+K GK Y+K++ +++ I +L Sbjct: 545 LIKKGHIYIAQPPLYKIKSGKTVNYLKNENDLEKLAIENSLKKIESVTFKNNKKFNYDKT 604 Query: 573 PALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNA 632 + L KL+ + ++++ ++ +I L D ++++ + Sbjct: 605 FIVQSYELYKLIKSIDGDKEILEQLSIVGAFTKKDNII----LITEDKNNQKKLGAIKAV 660 Query: 633 LVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICT 692 + + E+ S+W+ + ++R + + LD F++ + + Sbjct: 661 AENLNQNLEKDDSKWQGLFEND------SFVLRREFYHELIEKRLDINFLSNNKVLTNLS 714 Query: 693 LGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWE 752 K+ + + I+ G+ V S + ++ +++ ++ LS+QR+KGLGEMNP++LWE Sbjct: 715 KFNKIANIFQSSCVIKDGDVPHKVNSLIEFIEIIIEIGKKNLSLQRFKGLGEMNPDELWE 774 Query: 753 TTMDPESRRMLRVTVKD--------AIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 TT++PE+ +L+V + + + D++F TLMG+ V R+ FI NA+ +N+DI Sbjct: 775 TTLNPENNSLLKVNYSELNGEISEPSSSDDEIFFTLMGEDVSKRKNFINSNAINVSNLDI 834 >UniRef50_O50627 DNA gyrase subunit B n=82 Tax=cellular organisms RepID=GYRB_BACHD Length = 637 Score = 739 bits (1908), Expect = 0.0, Method: Composition-based stats. Identities = 324/640 (50%), Positives = 432/640 (67%), Gaps = 13/640 (2%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 +YD S I+VL+GL+AVRKRPGMYIG T GLHH+V+E+VDN+IDEA+AG C EI V Sbjct: 6 QAYDESQIQVLEGLEAVRKRPGMYIGST-SSRGLHHLVWEIVDNSIDEAMAGFCDEIGVV 64 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 I DNS++V D+GRGIP GIH + G A EVIMTVLHAGGKF YKVSGGLHGVG SV Sbjct: 65 IEEDNSITVTDNGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASV 124 Query: 123 VNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEF 182 VNALS LE+ + REGK+H Q + GVP A L V G T++TGT + F P + FT T F Sbjct: 125 VNALSTMLEVEVHREGKVHYQKFHRGVPAADLEVIGTTDRTGTKIHFKPDGDIFTETTVF 184 Query: 183 EYEILAKRLRELSFLNSGVSIRLRDKRDGKE-DHFHYEGGIKAFVEYLNKNKTPIHPNIF 241 EY+ LA RLREL+FLN G+ I++ D R+ ++ D FHYEGGI +FVE+LN+ + +H Sbjct: 185 EYDTLASRLRELAFLNKGLRIKITDMREEEKSDEFHYEGGIASFVEHLNRTRETLHETPI 244 Query: 242 YFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEG 301 + EK G+ VE+A+Q+NDGF NIY F NNI +GGTH +GF+ +TR +N Y K Sbjct: 245 HIEGEKQGVYVEIAVQYNDGFTSNIYSFANNINTHEGGTHESGFKTGLTRVINDYARKHN 304 Query: 302 YSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYL 361 K++ + TG+D REGL A++SVK+PDP+F QTK KL +SE ++ + E + +L Sbjct: 305 LFKESDPNLTGEDVREGLTAIISVKIPDPQFEGQTKTKLGNSEARTITDSLFTEHFSRFL 364 Query: 362 LENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELY 421 +E+P A+ +V K + A+RAREAA++ARE+TRRK AL+++ LPGKLADC RD ++SE+Y Sbjct: 365 IEHPQVARKLVDKGLMASRAREAAKKARELTRRKSALEVSSLPGKLADCSSRDASISEIY 424 Query: 422 LVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRD 481 +VEGDSAGGSAKQGR+R QAILPL+GKILNVEKAR DK+L++ E+ +ITALG GIG D Sbjct: 425 IVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILANNEIRAIITALGTGIG-D 483 Query: 482 EYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGK 541 +++ +K RYH IIIMTDADVDG+HIRTL+LTFFYR M ++E G+VYIAQPPLYKV++GK Sbjct: 484 DFDIEKARYHKIIIMTDADVDGAHIRTLILTFFYRYMRPLIEHGYVYIAQPPLYKVQQGK 543 Query: 542 QEQYIKDDEAMDQYQISIALD-GATLHTNASAPALAGEALEKLVSEYNATQKMINRMERR 600 QY D + + + + + L + ++ +R Sbjct: 544 DIQYAYGDAELQEILSQLPDKAKPGIQRYKGLGEMNPSQL---------WETTMDPGQRT 594 Query: 601 YPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDK 640 + L++ + + E + D R + Sbjct: 595 VLQVTLEDAMKADEIFEILMGDRVEPRRDFIQENARYVKN 634 Score = 188 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 60/185 (32%), Positives = 86/185 (46%), Gaps = 5/185 (2%) Query: 623 EQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFI 682 R L + + E+ + I+ + VD + I Sbjct: 455 NVEKARLDKILANNEIRAIITALGTGIGDDFDIEKARYHKIIIMTDADVDGAHI--RTLI 512 Query: 683 TGGEYRRICTLGEKLRGLLEEDAFIERGERR--QPVASFEQALDWLVKES-RRGLSIQRY 739 YR + L E + + + + + Q + + L + + IQRY Sbjct: 513 LTFFYRYMRPLIEHGYVYIAQPPLYKVQQGKDIQYAYGDAELQEILSQLPDKAKPGIQRY 572 Query: 740 KGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKA 799 KGLGEMNP QLWETTMDP R +L+VT++DA+ AD++F LMGD VEPRR FI+ENA Sbjct: 573 KGLGEMNPSQLWETTMDPGQRTVLQVTLEDAMKADEIFEILMGDRVEPRRDFIQENARYV 632 Query: 800 ANIDI 804 N+DI Sbjct: 633 KNLDI 637 >UniRef50_UPI00016C54E0 DNA gyrase subunit B n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C54E0 Length = 810 Score = 733 bits (1892), Expect = 0.0, Method: Composition-based stats. Identities = 331/819 (40%), Positives = 492/819 (60%), Gaps = 40/819 (4%) Query: 4 SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTI 63 Y +++ LK +R RPGMYIG+TD G+HH+V+EVV N++DEALAG CK I +T+ Sbjct: 10 GYTEDNLQTLKDAAHIRHRPGMYIGNTD-IEGMHHLVWEVVYNSVDEALAGFCKNIFITV 68 Query: 64 HADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVV 123 H+D S++V DDGRGIP G+ + G S E +T+ + GKF++++YK S GLHG+G + Sbjct: 69 HSDESITVSDDGRGIPVGVKADTGKSTLEEALTIAGSSGKFNNDAYKTSAGLHGMGAKAM 128 Query: 124 NALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK--TGTMVRFWPSLETFTNVTE 181 NALS+ I+R+G++++ +E G + L G K TGT + F P E F ++ Sbjct: 129 NALSEWCTAEIKRDGRVYKMEFEKGYATSKLEDLGPAPKGQTGTTITFKPDPEKFGDIL- 187 Query: 182 FEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIF 241 F+Y+ L R +++SFLN G+ + L D+R GK D FH E GI +VE LN+++ +P I Sbjct: 188 FDYDRLGTRFQQISFLNKGLKLALADERVGKSDTFHSERGIAEYVEVLNRSEQTNYPLI- 246 Query: 242 YFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEG 301 Y + + DG+ VEV Q+ G + CFTNN +DGGTHL+GFR +TR + Y K Sbjct: 247 YINKQIDGVTVEVCFQYTQGETKLEMCFTNNAYNKDGGTHLSGFRGGLTRAIGHYGKKAN 306 Query: 302 YSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYL 361 K+ + GDD REGL AV+++ P PKF SQTK KL S EV+ + E+L++YL Sbjct: 307 LFKE--IELRGDDFREGLTAVINISHPQPKFESQTKVKLTSPEVEGQTSSVVYEVLSDYL 364 Query: 362 LENPTDAKIVVGKIIDAARAREAARRAREMTR-RKGALDLAGLPGKLADCQERDPALSEL 420 NP +A+ + K++ A AR AA++AR+ + RK AL+ GLPGKL DC RD +EL Sbjct: 365 ERNPKEAERICKKVLLTAEARIAAKKARDAVKGRKDALNSGGLPGKLYDCSSRDRENTEL 424 Query: 421 YLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR 480 +LVEGDSAGGSA+ GR+R+ QAILPL+GK+LNVEKA+F+K+L + E++ LI+A+G I Sbjct: 425 FLVEGDSAGGSAESGRDREFQAILPLRGKVLNVEKAKFEKLLENNEISALISAVGVDIDN 484 Query: 481 DEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKG 540 E + K+RY IIIMTDADVDG HIRTLLLTFF+RQM +++E GHV++A+PPLYKV + Sbjct: 485 VE-DVSKVRYGKIIIMTDADVDGQHIRTLLLTFFFRQMRKLIEAGHVFVARPPLYKVTQK 543 Query: 541 KQEQYIKDDEAMDQYQISIALDGATLH---TNASAPALAGEALEKLVSEYNATQKMINRM 597 K+ ++I+ E M + L TL + A ++G+ L KL+ + + + + Sbjct: 544 KETRFIQSREEMVTQLTTRGLKNTTLRATQVDRPARDISGDELTKLLPLLDEAESAVVGL 603 Query: 598 ERRYPKAM------LKELIYQPTLTEADLSDE------QTVTRWVNALVSELNDKEQHGS 645 ERR + L L E + + E V + AL EL + G Sbjct: 604 ERRGRNLDELLTRAVDGLFPTYNLYEREKNKEHWFRTTDEVAAFKQALADELKREPVVGE 663 Query: 646 QWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDA 705 + D + + +L + +++ G D + +RI +R L+ Sbjct: 664 DYTLDEWHDLK-SLNRAVTKLKAFGFDAADLVPL--------QRIAGREPPVRYTLD--- 711 Query: 706 FIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRV 765 + + S + + + + +G+++ R+KGLGEM+PE+LW TT+DP+ R +L+V Sbjct: 712 ---HDGSNKSLVSLRELVIEIRRLGEKGIAVTRFKGLGEMDPEELWATTLDPQYRTLLKV 768 Query: 766 TVKDAIAADQLFTTLMGDAVEPRRAFIEENALK-AANID 803 T+ DA A+++F TLMG V+ R+AFI N+LK +ID Sbjct: 769 TLNDAFKAEEMFRTLMGKEVQDRKAFIFSNSLKSVEDID 807 >UniRef50_B8FXX0 DNA gyrase subunit B n=70 Tax=Bacteria RepID=B8FXX0_DESHD Length = 644 Score = 726 bits (1874), Expect = 0.0, Method: Composition-based stats. Identities = 317/641 (49%), Positives = 432/641 (67%), Gaps = 14/641 (2%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 +N Y++ I+VL+GL+AVRKRPGMYIG T GLHH+V+E+VDN+IDEALAG+C I V Sbjct: 13 TNDYNAGQIEVLEGLEAVRKRPGMYIGST-SLRGLHHLVYEIVDNSIDEALAGYCDTIEV 71 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 TIH DNS+SV D+GRGIP IHP+ G A EV +TVLHAGGKF ++YKVSGGLHGVG+S Sbjct: 72 TIHKDNSISVVDNGRGIPVDIHPKLGKPAVEVALTVLHAGGKFSGSAYKVSGGLHGVGMS 131 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK--TGTMVRFWPSLETFTNV 179 VVNALS L + ++++G I+ Q + G + LAV G+ + TGT + F P E F Sbjct: 132 VVNALSTWLHVEVRKDGNIYHQEFMRGKTKTELAVIGQVDPNQTGTTITFSPDPEIF-ED 190 Query: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPN 239 T F ++ LA RLRELSFLN VSI L D R+ K++ +++ GGI FV+Y+N++K +HP Sbjct: 191 TVFLFDTLAHRLRELSFLNKKVSITLIDAREDKKEVYYHTGGIYDFVKYINRSKESLHPE 250 Query: 240 IFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDK 299 YF EKDG+ VEV++Q+NDG+ EN++ + NNI +GGTH +GF+AA+TR N Y K Sbjct: 251 PIYFEAEKDGVQVEVSMQYNDGYVENLFSYANNIHTHEGGTHESGFKAALTRVANDYARK 310 Query: 300 EGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAE 359 K + + +G+D REGL AV+SVKVP+P+F QTK KL +SE++S V+ E L+ Sbjct: 311 NNILKANEANLSGEDIREGLTAVISVKVPEPQFEGQTKTKLGNSEIRSIVDSITGEGLSA 370 Query: 360 YLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSE 419 + ENP K V+ K I A+RAREAAR+ARE+TRRK AL+++ LPGKLADC ++ L E Sbjct: 371 FFEENPAIGKKVIEKSIQASRAREAARKARELTRRKSALEVSALPGKLADCSWKEAELCE 430 Query: 420 LYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIG 479 +Y+VEGDSAGGSAKQGR+R+ QAILPL+GKILNVEKAR D++L + E+ +ITA+G GI Sbjct: 431 MYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDRILGNAEIRAMITAMGTGIS 490 Query: 480 RDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKK 539 D ++ +K RYH ++IMTDADVDG+HIR LLLTFF+R M ++E +VYIAQPPL+KVKK Sbjct: 491 ED-FDIEKARYHKLVIMTDADVDGAHIRILLLTFFFRYMKPLLENNYVYIAQPPLFKVKK 549 Query: 540 GKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMER 599 GK Y+ +E + + Q I D + + E L + ++ +R Sbjct: 550 GKDIHYVYSNEELAKLQDEIGRDRVEIQRYKGLGEMNAEQL---------WETTMDPAKR 600 Query: 600 RYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDK 640 + +++ I L + D R ++ Sbjct: 601 TILQVTMEDAIKADELFTILMGDVVEPRREFIQDNAQYVRN 641 Score = 189 bits (481), Expect = 3e-46, Method: Composition-based stats. Identities = 60/182 (32%), Positives = 85/182 (46%) Query: 623 EQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFI 682 R L + + E+ + +V + VD + Sbjct: 463 NVEKARLDRILGNAEIRAMITAMGTGISEDFDIEKARYHKLVIMTDADVDGAHIRILLLT 522 Query: 683 TGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGL 742 Y + + +++G+ V S E+ + R + IQRYKGL Sbjct: 523 FFFRYMKPLLENNYVYIAQPPLFKVKKGKDIHYVYSNEELAKLQDEIGRDRVEIQRYKGL 582 Query: 743 GEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANI 802 GEMN EQLWETTMDP R +L+VT++DAI AD+LFT LMGD VEPRR FI++NA N+ Sbjct: 583 GEMNAEQLWETTMDPAKRTILQVTMEDAIKADELFTILMGDVVEPRREFIQDNAQYVRNL 642 Query: 803 DI 804 D+ Sbjct: 643 DV 644 >UniRef50_Q9ZLX3 DNA gyrase subunit B n=50 Tax=Epsilonproteobacteria RepID=GYRB_HELPJ Length = 773 Score = 720 bits (1857), Expect = 0.0, Method: Composition-based stats. Identities = 346/816 (42%), Positives = 510/816 (62%), Gaps = 58/816 (7%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 +Y S SIKVLKGL+ VRKRPGMYIGDT+ G GLHHMV+EVVDNA+DE++AG C I +T Sbjct: 2 QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 + + S V+D+GRGIP IHP E + A V++T+LHAGGKFD+++YKVSGGLHGVGVSV Sbjct: 61 LTEEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120 Query: 123 VNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE---KTGTMVRFWPSLETFTNV 179 VNALS++L + I++EG+I+RQ +E G+P + L + G+T+ ++GT + F+P V Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVM-EV 179 Query: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPN 239 EF+ IL KR +E+++LN G+ I ++++ ++ + Y+ G+K FV+ K + Sbjct: 180 VEFQAGILQKRFKEMAYLNDGLKISFKEEKTQLQETYFYKDGLKQFVKDSAKKELLTPII 239 Query: 240 IFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDK 299 F E+ +EVAL + D + EN F NNI +GGTH AGF+ +++ + Y+D Sbjct: 240 AFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYIDN 299 Query: 300 EGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAE 359 +K+++ +D +EGLIAVVS+K+ +P F QTK KL SS ++ V + + + + + Sbjct: 300 NIKTKESRPI--SEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIHQ 357 Query: 360 YLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSE 419 +L ENP +AKI+ K + AA+AREA+++ARE+TR+K L + LPGKLADCQ +DP SE Sbjct: 358 FLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLESE 417 Query: 420 LYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIG 479 ++LVEGDSAGGSAKQGR+R QAILPLKGKILNVEK+ K+L S+E+ +ITA GCGI Sbjct: 418 IFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI- 476 Query: 480 RDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKK 539 ++ ++ ++LRYH IIIMTDADVDGSHI+TLL+TFFYR + ++E+GHV+IAQ PLYK KK Sbjct: 477 QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVFIAQAPLYKYKK 536 Query: 540 GKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMER 599 GK E Y+KD A+D + I ++ + L L+ + + +E+ Sbjct: 537 GKTEIYLKDSVALDHFLIEHGINSVDIEGIGKN------DLMNLLKVARHYRYTLLELEK 590 Query: 600 RYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELND-----------KEQHGSQWK 648 RY +L+ L + +A D + + + + + LN H K Sbjct: 591 RY--NLLEVLRFLIETKDALSLDMKVLEKSILEKLEGLNYQILRSFATEESLHLHAQTPK 648 Query: 649 FDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIE 708 V N + NLF+ ++ H Y+++ ++ Sbjct: 649 GLVEFNLDDNLFKDVLFEEAHYT---------------YQKLME------------YNLD 681 Query: 709 RGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVK 768 E + +A E+ ++ +++G +IQRYKGLGEMNP LWETTM E+R ++++ ++ Sbjct: 682 FLENKDILAFLEEVENY----AKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIE 737 Query: 769 DAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 D D +F+ MGD VEPRRAFI+ +A +D+ Sbjct: 738 DLEKTDAVFSLCMGDEVEPRRAFIQAHAKDVKQLDV 773 >UniRef50_Q9X3Y6 DNA gyrase subunit B n=840 Tax=cellular organisms RepID=GYRB_BACAN Length = 640 Score = 699 bits (1805), Expect = 0.0, Method: Composition-based stats. Identities = 342/642 (53%), Positives = 444/642 (69%), Gaps = 17/642 (2%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 NSYD S I+VL+GL+AVRKRPGMYIG T GLHH+V+E+VDN+IDEALAG+C EI V+ Sbjct: 9 NSYDESQIQVLEGLEAVRKRPGMYIGSTSG-KGLHHLVWEIVDNSIDEALAGYCDEINVS 67 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 I DNS+ V D+GRGIP GI + G A EVIMTVLHAGGKF YKVSGGLHGVG SV Sbjct: 68 IEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASV 127 Query: 123 VNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEF 182 VNALS +LE+ + REGKIH Q YE G+P A L V G+T++TGT+ RF P E F T + Sbjct: 128 VNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDTDQTGTITRFKPDPEIFQETTVY 187 Query: 183 EYEILAKRLRELSFLNSGVSIRLRDKRDGK-EDHFHYEGGIKAFVEYLNKNKTPIHPNIF 241 E++ LA R+REL+FLN + + + DKR+ K + FHYEGGIK++VE+LN++K PIH Sbjct: 188 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 247 Query: 242 YFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEG 301 Y KDGI VEV+LQ+N+G+ NIY FTNNI +GGTH GF+ A+TR +N Y K Sbjct: 248 YVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNS 307 Query: 302 YSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYL 361 K A + TG+D REGL A+VS+K P+P+F QTK KL +SE ++ E +E ++L Sbjct: 308 ILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFL 367 Query: 362 LENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELY 421 LENP A+ +V K AARAR AA++ARE+TRRK AL+++ LPGKLADC +DPA+SE+Y Sbjct: 368 LENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIY 427 Query: 422 LVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRD 481 +VEGDSAGGSAKQGR+R QAILPLKGKI+NVEKAR DK+LS+ EV T+ITA+G IG D Sbjct: 428 IVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGD 487 Query: 482 EYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGK 541 ++ +K RYH +IIMTDADVDG+HIRTLLLTFFYR M +I+E G++YIAQPPL+KV++GK Sbjct: 488 -FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKVQQGK 546 Query: 542 QEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME--- 598 + QY +++ +++ + A G K + E N TQ M+ Sbjct: 547 KIQYAYNEKELEKILAEL-----------PAQPKPGIQRYKGLGEMNPTQLWETTMDPEV 595 Query: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDK 640 R + L++ I E + D+ R ++ Sbjct: 596 RSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKN 637 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 58/183 (31%), Positives = 87/183 (47%), Gaps = 1/183 (0%) Query: 623 EQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFI 682 R L ++ + E+ + ++ + VD + Sbjct: 458 NVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLT 517 Query: 683 TGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKE-SRRGLSIQRYKG 741 Y R + +++G++ Q + ++ L + ++ IQRYKG Sbjct: 518 FFYRYMRQIIEHGYIYIAQPPLFKVQQGKKIQYAYNEKELEKILAELPAQPKPGIQRYKG 577 Query: 742 LGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAAN 801 LGEMNP QLWETTMDPE R +L+V+++DAI AD+ F LMGD VEPRR FI+ENA N Sbjct: 578 LGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKN 637 Query: 802 IDI 804 +DI Sbjct: 638 LDI 640 >UniRef50_Q6GKU0 DNA gyrase subunit B n=143 Tax=cellular organisms RepID=GYRB_STAAR Length = 644 Score = 690 bits (1781), Expect = 0.0, Method: Composition-based stats. Identities = 317/631 (50%), Positives = 420/631 (66%), Gaps = 15/631 (2%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 +++Y + I+VL+GL+AVRKRPGMYIG T + GLHH+V+E+VDN+IDEALAG+ +I V Sbjct: 11 TDNYGAGQIQVLEGLEAVRKRPGMYIGSTSE-RGLHHLVWEIVDNSIDEALAGYANQIEV 69 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 I DN + V D+GRGIP I + G A EVI+TVLHAGGKF YKVSGGLHGVG S Sbjct: 70 VIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLHGVGSS 129 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTE 181 VVNALSQ LE+ + R I+ Q Y+ GVPQ L G T+KTGT++RF E FT T Sbjct: 130 VVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVGTTDKTGTVIRFKADGEIFTETTV 189 Query: 182 FEYEILAKRLRELSFLNSGVSIRLRDKRDGK---EDHFHYEGGIKAFVEYLNKNKTPIHP 238 + YE L +R+REL+FLN G+ I LRD+RD + ED +HYEGGIK++VE LN+NK PIH Sbjct: 190 YNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYEGGIKSYVELLNENKEPIHD 249 Query: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Y KD I VE+A+Q+N G+ N+ + NNI +GGTH GF+ A+TR LN+Y Sbjct: 250 EPIYIHQSKDDIEVEIAIQYNSGYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGL 309 Query: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 K+ K +G+D REG+ A++S+K DP+F QTK KL +SEV+ V++ +E Sbjct: 310 SSKIMKEDKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFE 369 Query: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 +L ENP A+ VV K I AARAR AA++ARE+TRRK ALD+A LPGKLADC + P Sbjct: 370 RFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEEC 429 Query: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 E++LVEGDSAGGS K GR+ + QAILPL+GKILNVEKAR D++L++ E+ +ITA G GI Sbjct: 430 EIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGI 489 Query: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 G D ++ K RYH I+IMTDADVDG+HIRTLLLTFFYR M ++E G+VYIAQPPLYK+ Sbjct: 490 GGD-FDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLT 548 Query: 539 KGKQEQYIKDDEAMDQYQISIALD-GATLHTNASAPALAGEALEKLVSEYNATQKMINRM 597 +GKQ+ Y+ +D +D+ + + ++ + + L + +N Sbjct: 549 QGKQKYYVYNDRELDKLKSELNPTPKWSIARYKGLGEMNADQL---------WETTMNPE 599 Query: 598 ERRYPKAMLKELIYQPTLTEADLSDEQTVTR 628 R + L++ I E + D R Sbjct: 600 HRALLQVKLEDAIEADQTFEMLMGDVVENRR 630 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 61/185 (32%), Positives = 86/185 (46%), Gaps = 6/185 (3%) Query: 623 EQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFI 682 R L + + + + + IV + VD + + Sbjct: 463 NVEKARLDRILNNNEIRQMITAFGTGIGGDFDLAKARYHKIVIMTDADVDGAHI--RTLL 520 Query: 683 TGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVA-SFEQALDWLVKESRR--GLSIQRY 739 YR + L E + + + + +Q ++ LD L E SI RY Sbjct: 521 LTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRELDKLKSELNPTPKWSIARY 580 Query: 740 KGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKA 799 KGLGEMN +QLWETTM+PE R +L+V ++DAI ADQ F LMGD VE RR FIE+NA+ A Sbjct: 581 KGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNAVYA 640 Query: 800 ANIDI 804 N+D Sbjct: 641 -NLDF 644 >UniRef50_Q2FUD6 DNA gyrase subunit B n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FUD6_METHJ Length = 675 Score = 688 bits (1774), Expect = 0.0, Method: Composition-based stats. Identities = 297/682 (43%), Positives = 425/682 (62%), Gaps = 52/682 (7%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 +SN+Y+S +IK+L+GL+ VR+RP MYIG TD GLHH+V+EVVDN+IDEALAG+C I Sbjct: 6 LSNTYNSENIKILRGLEPVRERPAMYIGSTD-SRGLHHLVYEVVDNSIDEALAGYCTHIQ 64 Query: 61 VTIHADNSVSVQDDGRGIPTG-IHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 119 V IH D SVSV+D+GRGIP + + +A E ++TVLHAGGKFD N+Y+VSGGLHGVG Sbjct: 65 VVIHQDGSVSVEDNGRGIPIDPMKDNDNKTALETVLTVLHAGGKFDKNTYQVSGGLHGVG 124 Query: 120 VSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGE-------------------- 159 VSVVNALS +L + ++G +R + G PQ L E Sbjct: 125 VSVVNALSVELTATVWKDGYEYRMFFSRGQPQTDLEKKEEDFEEIKDRYIKRYGSLPDNC 184 Query: 160 ------------TEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRD 207 ++ +GTM+RF P + F EF+Y+ILA RLREL+FLNSG++I + D Sbjct: 185 PETKEEFLNRYLSKISGTMIRFKPDSKIF-ETIEFDYDILAHRLRELAFLNSGITISIAD 243 Query: 208 KR----DGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFS--TEKDGIGVEVALQWNDG 261 +R + + F YEGGI +V YLN PIH ++ FS E+ + V++A Q+ Sbjct: 244 ERCEDLEECSEVFSYEGGISEYVRYLNHEAQPIHESVISFSRKDEEARVEVDIAFQYAAA 303 Query: 262 FQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIA 321 + E +Y + N++ ++GGTHL GFR+A+T+ +N + K +S GDD REGL A Sbjct: 304 YSEKVYTYVNSVNTKEGGTHLEGFRSALTKAINKMGKENKAIKDQNLSLKGDDVREGLTA 363 Query: 322 VVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARA 381 ++SV++ +P+F QTK KL +SEVK V+ + L EY E+P + +V K + A +A Sbjct: 364 IISVRMANPQFEGQTKMKLGNSEVKGIVDSLVYASLCEYFEEHPKELAAIVDKAVLAYQA 423 Query: 382 REAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQ 441 REAAR+A+E+ RRK L+ +GLPGKLADC ER SE+Y+VEGDSAGGSAKQGR+R+ Q Sbjct: 424 REAARKAKELARRKSTLESSGLPGKLADCSERSAEKSEIYIVEGDSAGGSAKQGRDRRFQ 483 Query: 442 AILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADV 501 AILPL+GKILNVEKA K+L + E+ LI+A+G G+G + ++ +K RYH IIIMTDADV Sbjct: 484 AILPLRGKILNVEKATVHKILKNNEIQALISAIGTGVG-ESFDIEKARYHHIIIMTDADV 542 Query: 502 DGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIAL 561 DG+HI TLL+TFF+R + ++E G++Y+AQPPLY++ KGKQE+Y +E M + + Sbjct: 543 DGAHISTLLMTFFFRYLQPLIEAGYIYLAQPPLYRIAKGKQEKYAYTEEEMKEILQEMGE 602 Query: 562 DGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLS 621 G + + L ++ R + ++++ Y + E + Sbjct: 603 KGVNVQRYKGLGEMNASQL---------WATTMDPETRVLKRVVIEDAAYANEIFEKLMG 653 Query: 622 DEQTVTR-WVNALVSELNDKEQ 642 D+ T R ++ E+ + + Sbjct: 654 DDVTARRDFIKRHAKEVTNLDI 675 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 50/174 (28%), Positives = 82/174 (47%) Query: 631 NALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRI 690 L + + E+ + I+ + VD + Y + Sbjct: 502 KILKNNEIQALISAIGTGVGESFDIEKARYHHIIIMTDADVDGAHISTLLMTFFFRYLQP 561 Query: 691 CTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQL 750 + I +G++ + + E+ + L + +G+++QRYKGLGEMN QL Sbjct: 562 LIEAGYIYLAQPPLYRIAKGKQEKYAYTEEEMKEILQEMGEKGVNVQRYKGLGEMNASQL 621 Query: 751 WETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 W TTMDPE+R + RV ++DA A+++F LMGD V RR FI+ +A + N+DI Sbjct: 622 WATTMDPETRVLKRVVIEDAAYANEIFEKLMGDDVTARRDFIKRHAKEVTNLDI 675 >UniRef50_Q9A0L0 DNA gyrase subunit B n=56 Tax=cellular organisms RepID=GYRB_STRP1 Length = 650 Score = 683 bits (1763), Expect = 0.0, Method: Composition-based stats. Identities = 306/645 (47%), Positives = 411/645 (63%), Gaps = 12/645 (1%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 YD+S I+VL+GL+AVR RPGMYIG T GLHH+V+E+VDN+IDEALAG I V Sbjct: 13 QEYDASQIQVLEGLEAVRMRPGMYIGSTAK-EGLHHLVWEIVDNSIDEALAGFASHIKVF 71 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 I ADNS++V DDGRGIP I + G A E + TVLHAGGKF YKVSGGLHGVG SV Sbjct: 72 IEADNSITVVDDGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSSV 131 Query: 123 VNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEF 182 VNALS +L++ + + G+IH Q ++ G A L V G T+ TGT V F P E FT T+F Sbjct: 132 VNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVIGTTDVTGTTVHFTPDPEIFTETTQF 191 Query: 183 EYEILAKRLRELSFLNSGVSIRLRDKRDG--KEDHFHYEGGIKAFVEYLNKNKTPIHPNI 240 +Y +LAKR++EL+FLN G+ I + DKR G +E+HF YEGGI ++VE+LN K I Sbjct: 192 DYSVLAKRIQELAFLNRGLKISITDKRSGMEQEEHFLYEGGIGSYVEFLNDKKDVIFETP 251 Query: 241 FYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKE 300 Y E +GI VEVA+Q+ +QE + F NNI +GGTH GFRAA+TR +N Y K Sbjct: 252 IYTDGELEGIAVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFRAALTRVINDYAKKN 311 Query: 301 GYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEY 360 K+ + + TG+D REGL AV+SVK P+P+F QTK KL +SEV + +E + Sbjct: 312 KILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFQRF 371 Query: 361 LLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSEL 420 LLENP A+ +V K I A++AR AA+RARE+TR+K L+++ LPGKLADC D +EL Sbjct: 372 LLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDANQNEL 431 Query: 421 YLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR 480 ++VEGDSAGGSAK GRNR+ QAILP++GKILNVEKA DK+L+++E+ +L TA+G G G Sbjct: 432 FIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGFGA 491 Query: 481 DEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKG 540 D ++ K RY ++IMTDADVDG+HIRTLLLT YR M ++E G+VYIAQPP+Y VK G Sbjct: 492 D-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVG 550 Query: 541 KQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME-- 598 + + + Q+ AL+ ++ + K + E + Q M+ Sbjct: 551 SEIKEYIQPGIDQEDQLKTALEKYSI-----GRSKPTVQRYKGLGEMDDHQLWETTMDPE 605 Query: 599 -RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQ 642 R + + + + + + D R + + + Sbjct: 606 NRLMARVTVDDAAEADKVFDMLMGDRVEPRRDFIEENAVYSTLDI 650 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 59/189 (31%), Positives = 82/189 (43%), Gaps = 8/189 (4%) Query: 623 EQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFI 682 L +E F + + ++ +V + VD + Sbjct: 463 NVEKATMDKILANEEIRSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLT 522 Query: 683 TGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASF-----EQALDWLVK--ESRRGLS 735 + R + ++ G + +Q L K R + Sbjct: 523 LIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKEYIQPGIDQEDQLKTALEKYSIGRSKPT 582 Query: 736 IQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEEN 795 +QRYKGLGEM+ QLWETTMDPE+R M RVTV DA AD++F LMGD VEPRR FIEEN Sbjct: 583 VQRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEADKVFDMLMGDRVEPRRDFIEEN 642 Query: 796 ALKAANIDI 804 A+ + +DI Sbjct: 643 AVYST-LDI 650 >UniRef50_Q04WF3 DNA gyrase subunit B n=20 Tax=Bacteria RepID=Q04WF3_LEPBJ Length = 641 Score = 676 bits (1743), Expect = 0.0, Method: Composition-based stats. Identities = 320/633 (50%), Positives = 448/633 (70%), Gaps = 19/633 (3%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 SY +S IK+L+GL+AVRKRPGMYIG T D TGLH MV+EVVDN++DEA+AGHC EI ++ Sbjct: 6 TSYSASQIKILEGLEAVRKRPGMYIG-TQDETGLHKMVYEVVDNSVDEAMAGHCTEIRIS 64 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 I +N + V+D+GRGIP IHP++ +S EV+MT+LHAGGKF++++YKVSGGLHGVGVSV Sbjct: 65 ILPNNIIEVKDNGRGIPVDIHPDKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSV 124 Query: 123 VNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEF 182 VNALS+ LE+ + ++GKI+ Q YE G+P +P+ + G++ + GT+VRF P FT +F Sbjct: 125 VNALSEYLEVEVHQKGKIYTQKYEKGIPVSPVEIKGDSSERGTIVRFKPDATIFT-TVDF 183 Query: 183 EYEILAKRLRELSFLNSGVSIRLRDKRDGKE------DHFHYEGGIKAFVEYLNKNKTPI 236 +++IL+ R REL+FLN G+ + + D+R G E + F + GGI +FVE++N+NK P+ Sbjct: 184 QFDILSARFRELAFLNKGLVLIVEDRRRGAEGENLLRNEFQFSGGIVSFVEHINENKHPM 243 Query: 237 HPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAY 296 H + +F KD + E+++Q+++ + ENI+CFTNNI GGTHL GFRAA+TRTLN + Sbjct: 244 H-KVIHFERNKDDVLAEISIQYSETYTENIFCFTNNINNNLGGTHLEGFRAALTRTLNDF 302 Query: 297 MDKEG-YSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNE 355 + K+ SKK +G+D +EGL AV+S+K+P P+F+SQTK+KLV++E+K ++ +E Sbjct: 303 LKKDTTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLVNAEIKGIMQTLSSE 362 Query: 356 LLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDP 415 L + ENP K ++ K I +A+AREAAR+AR++TRRK L+ GLPGKLADC E+DP Sbjct: 363 GLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGGGLPGKLADCSEKDP 422 Query: 416 ALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALG 475 A SELYLVEGDSAGGSAKQGR+R QAILPLKGKILNVEKAR DK+LSS+E+ L++ALG Sbjct: 423 AFSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILSSEEIRILVSALG 482 Query: 476 CGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLY 535 GIG DE+N +K+RYH I+IMTDAD+DGSHIRTLLLTFF+R M ++E+G++Y+AQPPLY Sbjct: 483 TGIGEDEFNINKIRYHKIMIMTDADIDGSHIRTLLLTFFFRYMRPVIEKGYLYVAQPPLY 542 Query: 536 KVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMIN 595 +K GK Y D+ ++ ++ + + + E L + ++ Sbjct: 543 LIKHGKNSTYAYSDKEKEELLKNVGTEKVVIQRYKGLGEMNPEQL---------WETTMD 593 Query: 596 RMERRYPKAMLKELIYQPTLTEADLSDEQTVTR 628 R K L + + + DE + Sbjct: 594 PSNRVVLKVKLDDFVEAEETFNILMGDEVQPRK 626 Score = 178 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 58/183 (31%), Positives = 82/183 (44%), Gaps = 1/183 (0%) Query: 623 EQTVTRWVNALVSELNDKEQHGSQWKF-DVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEF 681 R L SE + N + + I+ + +D + Sbjct: 459 NVEKARLDKILSSEEIRILVSALGTGIGEDEFNINKIRYHKIMIMTDADIDGSHIRTLLL 518 Query: 682 ITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKG 741 Y R L I+ G+ S ++ + L + IQRYKG Sbjct: 519 TFFFRYMRPVIEKGYLYVAQPPLYLIKHGKNSTYAYSDKEKEELLKNVGTEKVVIQRYKG 578 Query: 742 LGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAAN 801 LGEMNPEQLWETTMDP +R +L+V + D + A++ F LMGD V+PR+ FIE NA K AN Sbjct: 579 LGEMNPEQLWETTMDPSNRVVLKVKLDDFVEAEETFNILMGDEVQPRKQFIEINAAKVAN 638 Query: 802 IDI 804 +D+ Sbjct: 639 LDL 641 >UniRef50_A5TY73 DNA gyrase subunit B n=542 Tax=Bacteria RepID=GYRB_MYCTA Length = 675 Score = 672 bits (1734), Expect = 0.0, Method: Composition-based stats. Identities = 301/662 (45%), Positives = 407/662 (61%), Gaps = 47/662 (7%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 + Y ++SI +L+GL+AVRKRPGMYIG T + GLHH+++EVVDNA+DEA+AG+ + V Sbjct: 10 DEYGAASITILEGLEAVRKRPGMYIGSTGE-RGLHHLIWEVVDNAVDEAMAGYATTVNVV 68 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 + D V V DDGRGIP H G+ +V+MT LHAGGKFD ++Y +SGGLHGVGVSV Sbjct: 69 LLEDGGVEVADDGRGIPVATHA-SGIPTVDVVMTQLHAGGKFDSDAYAISGGLHGVGVSV 127 Query: 123 VNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEF 182 VNALS +LE+ I+R+G Q+YE P L T+KTG+ VRFW F TE+ Sbjct: 128 VNALSTRLEVEIKRDGYEWSQVYEKSEPLG-LKQGAPTKKTGSTVRFWADPAVF-ETTEY 185 Query: 183 EYEILAKRLRELSFLNSGVSIRLRDKRDG------------------------------- 211 ++E +A+RL+E++FLN G++I L D+R Sbjct: 186 DFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASERAAESTAPHK 245 Query: 212 -KEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFT 270 K FHY GG+ FV+++N+ K IH +I FS + G VE+A+QWN G+ E+++ F Sbjct: 246 VKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVEIAMQWNAGYSESVHTFA 305 Query: 271 NNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDP 330 N I +GGTH GFR+A+T +N Y K + TGDD REGL AV+SVKV +P Sbjct: 306 NTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREGLAAVISVKVSEP 365 Query: 331 KFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRARE 390 +F QTK KL ++EVKS V++ NE L + NPTDAK+VV K + +A+AR AAR+ARE Sbjct: 366 QFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSSAQARIAARKARE 425 Query: 391 MTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKI 450 + RRK A D+ GLPGKLADC+ DP SELY+VEGDSAGGSAK GR+ QAILPL+GKI Sbjct: 426 LVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGKI 485 Query: 451 LNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLL 510 +NVEKAR D++L + EV +ITALG GI DE++ KLRYH I++M DADVDG HI TLL Sbjct: 486 INVEKARIDRVLKNTEVQAIITALGTGIH-DEFDIGKLRYHKIVLMADADVDGQHISTLL 544 Query: 511 LTFFYRQMPEIVERGHVYIAQPPLYKVKKGK-QEQYIKDDEAMDQYQISIALDGATLHTN 569 LT +R M ++E GHV++AQPPLYK+K + ++ D D + G ++ Sbjct: 545 LTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGLKAGKKINKE 604 Query: 570 ASAPALAGEALEKLVSEYNATQKMINRME---RRYPKAMLKELIYQPTLTEADLSDEQTV 626 G K + E +A + M+ R + L + L + ++ Sbjct: 605 D------GIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELFSILMGEDVDA 658 Query: 627 TR 628 R Sbjct: 659 RR 660 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 49/189 (25%), Positives = 77/189 (40%), Gaps = 7/189 (3%) Query: 623 EQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFI 682 R L + + + + IV + VD + Sbjct: 487 NVEKARIDRVLKNTEVQAIITALGTGIHDEFDIGKLRYHKIVLMADADVDGQHISTLLLT 546 Query: 683 TGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKES-------RRGLS 735 + R + ++ A ++ D L++ + Sbjct: 547 LLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGLKAGKKINKEDG 606 Query: 736 IQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEEN 795 IQRYKGLGEM+ ++LWETTMDP R + +VT+ DA AAD+LF+ LMG+ V+ RR+FI N Sbjct: 607 IQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELFSILMGEDVDARRSFITRN 666 Query: 796 ALKAANIDI 804 A +D+ Sbjct: 667 AKDVRFLDV 675 >UniRef50_P21558 DNA gyrase subunit B n=61 Tax=cellular organisms RepID=GYRB_HALSQ Length = 639 Score = 669 bits (1725), Expect = 0.0, Method: Composition-based stats. Identities = 309/632 (48%), Positives = 406/632 (64%), Gaps = 18/632 (2%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 N Y + I+VL+GL+AVRKRP MYIG TD GLHH+V+EVVDN+IDEALAGHC I V Sbjct: 5 NEYGAGQIQVLEGLEAVRKRPAMYIGSTD-SRGLHHLVYEVVDNSIDEALAGHCDAIEVA 63 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 +H D SVSV D+GRGIP G H + A EVIMTVLHAGGKFD+ SY+VSGGLHGVGV+V Sbjct: 64 LHEDGSVSVTDNGRGIPVGTHEQYDRPALEVIMTVLHAGGKFDNKSYQVSGGLHGVGVTV 123 Query: 123 VNALSQKLELVIQREGKIHRQIYEHGVPQAP----LAVTGETEKTGTMVRFWPSLETFTN 178 VNALS +LE+ ++ +G + +E G PQ + E TGT +RFWP F Sbjct: 124 VNALSSELEVEVKHDGAVWTHRFEVGEPQVEEFERVRDLEPGEDTGTTIRFWPDDGIF-E 182 Query: 179 VTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHP 238 TEF+++ L RLREL+FLNSGV I L D+R + F +EGGI+ FVEYLN+ KT +H Sbjct: 183 TTEFDFKTLENRLRELAFLNSGVEISLSDERTDESSTFLFEGGIREFVEYLNETKTALHD 242 Query: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 ++ Y+ E +GI VE+A+Q D Q +I+ F NNI R+GGTHL GF+ A+TR +N Y + Sbjct: 243 DVIYYDDESEGIEVEIAMQATDELQGSIHAFANNINTREGGTHLTGFKTALTRVVNDYAN 302 Query: 299 KEGYSKKAK-VSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELL 357 + G+D REGL AV+SVK PDP+F QTK KL +SEV+ VE ++ L Sbjct: 303 SHDMLDDLDGDNLRGEDVREGLTAVISVKHPDPQFEGQTKTKLGNSEVRGIVESVTHQQL 362 Query: 358 AEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPAL 417 + ENP A ++ K ++AARAR+AA++A E+TRRK AL+ LPGKLADCQ RDP+ Sbjct: 363 GTFFEENPDTATAIISKAVEAARARKAAKQAEELTRRKSALESTSLPGKLADCQSRDPSE 422 Query: 418 SELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCG 477 SEL++VEGDSAGGSAKQGR+RK QAILPLKGKILNVEK R D++L + E+ LITA+G G Sbjct: 423 SELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKHRLDRILENDEIRALITAIGGG 482 Query: 478 IGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKV 537 +G DE++ +K RY +I+MTDADVDG+HIRTLLLT YR M ++E G+VY AQPPLY+V Sbjct: 483 VG-DEFDIEKARYQRLILMTDADVDGAHIRTLLLTLLYRHMRPLIEAGYVYAAQPPLYRV 541 Query: 538 KKGKQEQYIKDDEAMDQYQISIALDG-ATLHTNASAPALAGEALEKLVSEYNATQKMINR 596 + D+ D+ + + + L +N Sbjct: 542 RYRGNTYDAMDEAERDRIIEEECNGNPTQVQRFKGLGEMNPDQL---------WDTTMNP 592 Query: 597 MERRYPKAMLKELIYQPTLTEADLSDEQTVTR 628 R + +++ + + D + Sbjct: 593 ENRVLKRITVEDAAAADRMFNILMGDAVGPRK 624 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 57/185 (30%), Positives = 89/185 (48%), Gaps = 5/185 (2%) Query: 623 EQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFI 682 R L ++ + E+ ++ ++ + VD + + Sbjct: 457 NVEKHRLDRILENDEIRALITAIGGGVGDEFDIEKARYQRLILMTDADVDGAHI--RTLL 514 Query: 683 TGGEYRRICTLGEKLRGLLEEDAFIE-RGERRQPVASFEQALDWLVKESRRG--LSIQRY 739 YR + L E + R A E D +++E G +QR+ Sbjct: 515 LTLLYRHMRPLIEAGYVYAAQPPLYRVRYRGNTYDAMDEAERDRIIEEECNGNPTQVQRF 574 Query: 740 KGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKA 799 KGLGEMNP+QLW+TTM+PE+R + R+TV+DA AAD++F LMGDAV PR+ FI+++A A Sbjct: 575 KGLGEMNPDQLWDTTMNPENRVLKRITVEDAAAADRMFNILMGDAVGPRKQFIKDHANDA 634 Query: 800 ANIDI 804 +DI Sbjct: 635 EWVDI 639 >UniRef50_C7M118 DNA gyrase subunit B n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M118_ACIFD Length = 647 Score = 666 bits (1717), Expect = 0.0, Method: Composition-based stats. Identities = 291/630 (46%), Positives = 398/630 (63%), Gaps = 17/630 (2%) Query: 4 SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTI 63 SY ++ I VL+GL+ VR RPGMYIG T +GLHH+V+EVVDNA+DE +AG C EI VTI Sbjct: 15 SYTAADIVVLEGLEHVRLRPGMYIGSTG-PSGLHHLVWEVVDNAVDEVMAGACTEIDVTI 73 Query: 64 HADNSVSVQDDGRGIPTGIHP-EEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 AD V+D+GRGIP HP + SAAEV++T L+AGGKF YKVSGGLHGVGVSV Sbjct: 74 LADGGCRVEDNGRGIPVDPHPSDPSKSAAEVVLTQLNAGGKFGTGGYKVSGGLHGVGVSV 133 Query: 123 VNALSQKLELVIQREGKIHRQIY-EHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180 VNALS +L L + R+G +R + + G P PL G + + GT+V FWP F T Sbjct: 134 VNALSARLVLEVHRDGSTYRMEFVKGGTPTGPLERIGSSGGRRGTVVTFWPDPTIF-EDT 192 Query: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKED--HFHYEGGIKAFVEYLNKNKTPIHP 238 EF + + +RL+ ++FLN GV +R RD+R G+E F Y GGI FV +LN+ K P+ Sbjct: 193 EFSAQRILERLQVIAFLNKGVVVRFRDERPGREHEQTFSYAGGIVDFVRHLNEPKGPLFA 252 Query: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 + Y++ ++ + VEVA WN F E ++ F N I +GG H GFR A+T+ +N Y Sbjct: 253 KVGYYAASEEDMEVEVAFSWNTTFYETLFTFANGISTEEGGMHAEGFRKALTQVINRYAR 312 Query: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 K+ + G+D REG+ +VSV++ +P+F QTK KL + V+S VE+ NE LA Sbjct: 313 ARNLLKERDENLEGNDIREGMTTIVSVRLVNPQFEGQTKTKLGNVSVRSFVERVTNEHLA 372 Query: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 +L ENP +A+ +V K I A RAR AAR+ARE+TRRK L+ AGLPGKL DC RDP+ S Sbjct: 373 TWLEENPREAQAIVQKAIVAQRARLAARQARELTRRKSGLESAGLPGKLTDCTSRDPSES 432 Query: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 EL++VEG+SAGG+ +GR+ K QA+LP++GKILNVE+AR DKMLS+QE+ +LI A+G G+ Sbjct: 433 ELFIVEGNSAGGTTIKGRDPKTQAVLPIRGKILNVERARLDKMLSNQEIQSLIAAIGAGV 492 Query: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 G DE++ K RYH +II+ DAD DGSHIRTLLLTFF+RQM +VE G VY AQPPLY Sbjct: 493 G-DEFDIKKARYHKVIILADADPDGSHIRTLLLTFFFRQMRPLVEAGMVYAAQPPLYSTL 551 Query: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598 G ++ YIK++ ++ + + + L +++ Sbjct: 552 LGTEKVYIKNEAERLRFLEAHPNHKKPFLRLKGLGEMDFDELRD---------TTLHQDR 602 Query: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTR 628 R K +++ + + D+ R Sbjct: 603 RTLLKVTIEQAAIADEVCSVLMGDDVEQRR 632 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 42/184 (22%), Positives = 76/184 (41%), Gaps = 4/184 (2%) Query: 623 EQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFI 682 R L ++ + ++ + ++ + D + + Sbjct: 466 NVERARLDKMLSNQEIQSLIAAIGAGVGDEFDIKKARYHKVIILADADPDGSHI--RTLL 523 Query: 683 TGGEYRRICTLGEKLRGLLEEDAFIER--GERRQPVASFEQALDWLVKESRRGLSIQRYK 740 +R++ L E + G + + + + L +L R K Sbjct: 524 LTFFFRQMRPLVEAGMVYAAQPPLYSTLLGTEKVYIKNEAERLRFLEAHPNHKKPFLRLK 583 Query: 741 GLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAA 800 GLGEM+ ++L +TT+ + R +L+VT++ A AD++ + LMGD VE RR FI+ENA A Sbjct: 584 GLGEMDFDELRDTTLHQDRRTLLKVTIEQAAIADEVCSVLMGDDVEQRRRFIQENAGDAR 643 Query: 801 NIDI 804 ID Sbjct: 644 FIDF 647 >UniRef50_C7QFM2 DNA gyrase subunit B n=8 Tax=Bacteria RepID=C7QFM2_CATAD Length = 661 Score = 662 bits (1707), Expect = 0.0, Method: Composition-based stats. Identities = 299/641 (46%), Positives = 403/641 (62%), Gaps = 25/641 (3%) Query: 5 YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIH 64 Y++ SI VL+GL+AVRKRPGMYIG T + GLHH+V+E+VDN++DEA+AG+ I V + Sbjct: 18 YNADSISVLEGLEAVRKRPGMYIGSTGE-RGLHHLVYEIVDNSVDEAMAGYADTIEVWLL 76 Query: 65 ADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN 124 AD V V D+GRGIP GI+ + G SA EV+MT+LHAGGKF D YKVSGGLHGVGVSVVN Sbjct: 77 ADGGVKVVDNGRGIPVGINTKTGKSALEVVMTILHAGGKFGDGGYKVSGGLHGVGVSVVN 136 Query: 125 ALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEY 184 ALS ++E+ + +G + Q+Y+HGVP+ + G TGT FW ++ F T + + Sbjct: 137 ALSSRVEVEVHTDGFVWNQVYKHGVPETEVQKGGPAADTGTSTIFWADVDIF-ETTVYSF 195 Query: 185 EILAKRLRELSFLNSGVSIRLRDKRDGKEDH--------FHYEGGIKAFVEYLNKNK-TP 235 E L++R +E++FLN G++I L D+R D +H EGGI FV ++N K P Sbjct: 196 ETLSRRFQEMAFLNKGLTISLTDERPEFRDENGEQRSVKYHAEGGIADFVRHINSRKGEP 255 Query: 236 IHPNIFYFSTEKDGIGV--EVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTL 293 +HPN+ F E + E+ALQWN + E+IY F NNI GGTH GFRAA+T + Sbjct: 256 VHPNVIDFEGEDKDRTLAAEIALQWNSQYSESIYTFANNINTHGGGTHEEGFRAALTTLI 315 Query: 294 NAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQM 353 N Y + K+ + G+D REGL +VSVK+ +P+F QTKDKL + E K+ V++ + Sbjct: 316 NKYARDQKLLKEKDDNLAGEDIREGLTTIVSVKLAEPQFEGQTKDKLGNPEAKTFVQRLV 375 Query: 354 NELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQER 413 E L E+L ENP +A+ V+ K I A+ AR AAR+ARE+TRRKG L+ + LPGKL+DCQ Sbjct: 376 YEKLGEWLEENPNEAREVIRKTIQASTARMAARKARELTRRKGLLESSSLPGKLSDCQSN 435 Query: 414 DPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITA 473 DP +E+++VEGDSAGGSA+ GR+ QAILP++GKILNVEKAR DK+L + EV LI+A Sbjct: 436 DPTKTEIFIVEGDSAGGSARSGRDPMTQAILPIRGKILNVEKARIDKVLQNTEVQALISA 495 Query: 474 LGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPP 533 LG G+ D+++ +LRYH II+M DADVDG+HI TLLLT +R M +VE GHVY+A PP Sbjct: 496 LGTGVH-DDFDISRLRYHKIILMADADVDGAHINTLLLTLLFRFMKPLVEAGHVYLAAPP 554 Query: 534 LYKVKK-GKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQK 592 LYKVK Y D DQ + G K + E NA + Sbjct: 555 LYKVKWTNNDFNYAYSDRERDQLLEAGVGAGKRRKDETV-------QRFKGLGEMNAEEL 607 Query: 593 MINRMERR---YPKAMLKELIYQPTLTEADLSDEQTVTRWV 630 I M+R + L + L + ++ R Sbjct: 608 RITTMDREHRILRQVTLDDAAQADDLFSVLMGEDVEARRNF 648 Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 75/188 (39%), Gaps = 6/188 (3%) Query: 623 EQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFI 682 R L + + + + I+ + VD + Sbjct: 474 NVEKARIDKVLQNTEVQALISALGTGVHDDFDISRLRYHKIILMADADVDGAHINTLLLT 533 Query: 683 TGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKES------RRGLSI 736 + + + ++ A ++ D L++ R+ ++ Sbjct: 534 LLFRFMKPLVEAGHVYLAAPPLYKVKWTNNDFNYAYSDRERDQLLEAGVGAGKRRKDETV 593 Query: 737 QRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENA 796 QR+KGLGEMN E+L TTMD E R + +VT+ DA AD LF+ LMG+ VE RR FI+ NA Sbjct: 594 QRFKGLGEMNAEELRITTMDREHRILRQVTLDDAAQADDLFSVLMGEDVEARRNFIQRNA 653 Query: 797 LKAANIDI 804 +DI Sbjct: 654 KDVRFLDI 661 >UniRef50_Q94BZ7 DNA gyrase subunit B, mitochondrial n=83 Tax=cellular organisms RepID=GYRBM_ARATH Length = 732 Score = 660 bits (1702), Expect = 0.0, Method: Composition-based stats. Identities = 279/651 (42%), Positives = 400/651 (61%), Gaps = 21/651 (3%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 S Y S I+VL+GLD VRKRPGMYIG T GLHH+V+E++DNAIDEA AG+ ++ V Sbjct: 88 SKGYSSEQIQVLEGLDPVRKRPGMYIGSTG-SRGLHHLVYEILDNAIDEAQAGYASKVDV 146 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNS--YKVSGGLHGVG 119 +HAD SVSV D+GRGIPT +HP S+ E ++TVLHAGGKF S Y VSGGLHGVG Sbjct: 147 VLHADGSVSVVDNGRGIPTDLHPATKKSSLETVLTVLHAGGKFGGTSSGYSVSGGLHGVG 206 Query: 120 VSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLA----VTGETEKTGTMVRFWPSLET 175 +SVVNALS+ LE+ + R+G H+Q Y G P L GT +RFWP E Sbjct: 207 LSVVNALSEALEVSVWRDGMEHKQNYSRGKPITTLTCRVLPLESKGTKGTSIRFWPDKEV 266 Query: 176 FTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDH----FHYEGGIKAFVEYLNK 231 FT EF++ +A R+REL+FLN V+I L+ + D E + + GG+ +V +LN Sbjct: 267 FTTAIEFDHNTIAGRIRELAFLNPKVTISLKKEDDDPEKTQYSEYSFAGGLTEYVSWLNT 326 Query: 232 NKTPIHPNIFYFSTEKDGIGVEVALQW-NDGFQENIYCFTNNIPQRDGGTHLAGFRAAMT 290 +K PIH ++ F E +G V+VALQW +D + + + + N+I DGGTH+ G +A++T Sbjct: 327 DKNPIH-DVLGFRREINGATVDVALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLT 385 Query: 291 RTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVE 350 RTLN K K+ +S +G+ REGL +VSVKVP+P+F QTK +L + EV+ V+ Sbjct: 386 RTLNTLAKKSKTVKEKDISLSGEHVREGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVD 445 Query: 351 QQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADC 410 Q + E L E+L +P + ++ K ++A +A AA+RARE+ R K L + LPGKLADC Sbjct: 446 QSVQEYLTEFLELHPDILESIISKSLNAYKAALAAKRARELVRSKSVLKSSSLPGKLADC 505 Query: 411 QERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATL 470 DP +SE+++VEGDSAGGSAKQGR+R+ QAILPL+GKILN+E+ M ++E+ L Sbjct: 506 SSTDPEVSEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNL 565 Query: 471 ITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIA 530 I LG G+ +++ + LRYH III+TDADVDG+HIRTLLLTFF+R + + G +Y+ Sbjct: 566 ILGLGLGVKGEDFKKENLRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVG 625 Query: 531 QPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNAT 590 PPL+KV++GK QY DD + + + + N GE + + + Sbjct: 626 VPPLFKVERGKNAQYCYDDADLKKITSNFPANA---SYNIQRFKGLGEMMPEQL-----W 677 Query: 591 QKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKE 641 + +N R + ++ ++ + + V + + + + + Sbjct: 678 ETTMNPETRILKQLVVDDIAEANMTFSSLMGARVDVRKELIKNAATRINLQ 728 Score = 148 bits (374), Expect = 6e-34, Method: Composition-based stats. Identities = 45/186 (24%), Positives = 74/186 (39%), Gaps = 3/186 (1%) Query: 622 DEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEF 681 + + E+ + E + I+ + VD + Sbjct: 547 NIERKDEAAMYKNEEIQNLILGLGLGVKGEDFKKENLRYHKIIILTDADVDGAHIRTLLL 606 Query: 682 ITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKE-SRRGLSIQRYK 740 Y+R + + +ERG+ Q + +IQR+K Sbjct: 607 TFFFRYQRALFDAGCIYVGVPPLFKVERGKNAQYCYDDADLKKITSNFPANASYNIQRFK 666 Query: 741 GLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENA--LK 798 GLGEM PEQLWETTM+PE+R + ++ V D A+ F++LMG V+ R+ I+ A + Sbjct: 667 GLGEMMPEQLWETTMNPETRILKQLVVDDIAEANMTFSSLMGARVDVRKELIKNAATRIN 726 Query: 799 AANIDI 804 +DI Sbjct: 727 LQRLDI 732 >UniRef50_B6GDL9 DNA gyrase subunit B n=2 Tax=Collinsella RepID=B6GDL9_9ACTN Length = 674 Score = 654 bits (1688), Expect = 0.0, Method: Composition-based stats. Identities = 288/669 (43%), Positives = 403/669 (60%), Gaps = 43/669 (6%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 N Y + IKVL+GL+AVR RPGMYIG T TGLHH+V+E+VDN++DEA+AG C +I VT Sbjct: 5 NEYGGNEIKVLEGLEAVRVRPGMYIGST-SSTGLHHLVWEIVDNSVDEAMAGFCTKIEVT 63 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 +H DNS++V D+GRGIP HP + + EV+MT+LHAGGKFD+++YKVSGGLHGVGVSV Sbjct: 64 VHPDNSITVVDNGRGIPVDEHPVKKIPTLEVVMTILHAGGKFDNSAYKVSGGLHGVGVSV 123 Query: 123 VNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEF 182 VNALS+K+ + ++R+G I+ + G + G +E TGT FWP E F T + Sbjct: 124 VNALSKKMNVQVRRDGHIYEMEFSRGKTTQKMREIGTSETTGTTTTFWPDEEIF-ETTVY 182 Query: 183 EYEILAKRLRELSFLNSGVSIRLRDKR--DGKEDHFHYEGGIKAFVEYLNKNKTPIH--P 238 +Y+IL RL++ +FLN + I L+D+R D + F Y GGI FV++LN+ KT Sbjct: 183 DYDILRTRLQQTAFLNKNLKIVLKDERTADPLVEEFCYAGGIVDFVKFLNEGKTVPEGLK 242 Query: 239 NIFYFSTEKDGI-------GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTR 291 + Y S E + VEVA+QWN + EN+ F N+I +GG H+ GFRAA+T Sbjct: 243 HPIYLSGESEPGAPVEKIGEVEVAIQWNTSYSENVVSFANDIRTIEGGMHMEGFRAALTS 302 Query: 292 TLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQ 351 +N Y K K+ + + TGDD REGL AVVSVK+ DP+F QTK KL SS +++ + Sbjct: 303 VINDYARKNNILKEKEGNLTGDDIREGLTAVVSVKLADPQFEGQTKAKLGSSFMRTLTRK 362 Query: 352 QMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQ 411 ++E LA++L E+P A+ ++ K A++AR AAR+ARE TRRK L+ A LPGKLADC Sbjct: 363 VVSEGLADFLEEHPKQAREIIKKAQQASKARNAARKAREATRRKSLLETASLPGKLADCS 422 Query: 412 ERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLI 471 RD L+EL++VEGDSAGGSAK GR R QAILPL+GKILNVE+ + SS+ + +LI Sbjct: 423 VRDAELTELFIVEGDSAGGSAKDGRRRDIQAILPLRGKILNVERVGDHRAFSSETIQSLI 482 Query: 472 TALGCGI-----GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGH 526 TA+GCG+ +++ K RYH IIIMTDADVDG+HIR LLLTFFY+ M +++ G+ Sbjct: 483 TAIGCGVTTGNGDGGDFDITKARYHKIIIMTDADVDGAHIRILLLTFFYKYMRPLIDAGY 542 Query: 527 VYIAQPPLYKVKKGKQEQYIK--------------------DDEAMDQYQISIALDGATL 566 VY+A PP++ +K + Y+ + + D Q + + Sbjct: 543 VYVACPPIFGIKVRNKIHYVYPNGRQAEDEILRDSIKALGLNPDEADDEQANGKVTKKRK 602 Query: 567 HTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTV 626 GE K + ++ R + +++ + + E Sbjct: 603 GYTVQRYKGLGEMDPKQL-----ASTTMDPKTRILQRVTIEDAVVADRAVRELMGSEVGY 657 Query: 627 TRWVNALVS 635 R + Sbjct: 658 RREYIEKHA 666 Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats. Identities = 46/184 (25%), Positives = 78/184 (42%), Gaps = 24/184 (13%) Query: 644 GSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEE 703 + + + + I+ + VD + +Y R + Sbjct: 490 TTGNGDGGDFDITKARYHKIIIMTDADVDGAHIRILLLTFFYKYMRPLIDAGYVYVACPP 549 Query: 704 DAFIERGERRQPVA------------------------SFEQALDWLVKESRRGLSIQRY 739 I+ + V + ++ + V + R+G ++QRY Sbjct: 550 IFGIKVRNKIHYVYPNGRQAEDEILRDSIKALGLNPDEADDEQANGKVTKKRKGYTVQRY 609 Query: 740 KGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKA 799 KGLGEM+P+QL TTMDP++R + RVT++DA+ AD+ LMG V RR +IE++A A Sbjct: 610 KGLGEMDPKQLASTTMDPKTRILQRVTIEDAVVADRAVRELMGSEVGYRREYIEKHAHDA 669 Query: 800 ANID 803 +D Sbjct: 670 RFLD 673 >UniRef50_P50074 DNA gyrase subunit B, novobiocin-resistant n=117 Tax=cellular organisms RepID=GYRBR_STRSH Length = 677 Score = 650 bits (1676), Expect = 0.0, Method: Composition-based stats. Identities = 289/658 (43%), Positives = 401/658 (60%), Gaps = 33/658 (5%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 + SYD+++I VL GLDAVRKRPGMYIG T + GLHH+V E+VDN++DEALAG I V Sbjct: 23 TASYDANAITVLDGLDAVRKRPGMYIGSTGE-RGLHHLVQELVDNSVDEALAGVADRIDV 81 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 T+ AD V V D+GRGIP G+HP E A EV++TVLHAGGKF Y VSGGLHGVG+S Sbjct: 82 TVLADGGVRVVDNGRGIPVGMHPVEKRPAVEVVLTVLHAGGKFGGGGYGVSGGLHGVGLS 141 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTE 181 VVNALS +L I +G Q Y G P APLA T +TGT + FW + F TE Sbjct: 142 VVNALSTRLSAEIWTDGHRWTQDYRDGAPTAPLARHEATSRTGTSLTFWADGDIF-ETTE 200 Query: 182 FEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDH----------------FHYEGGIKAF 225 + +E LA+R +E++FLN G+++ L D+R + Y+GGI F Sbjct: 201 YSFETLARRHQEMAFLNGGLTLTLTDERSSARATAAVDEADSDPTAKTVSYRYDGGITDF 260 Query: 226 VEYLNKNK-TPIHPNIFYFSTEKDG--IGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 282 V +LN K P HP++ + E + E+ALQWN + +++Y + N I +GGTH Sbjct: 261 VVHLNARKGEPAHPSVITIAAEDTERLLSAEIALQWNGQYTDSVYSYANAIHTHEGGTHE 320 Query: 283 AGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 342 GFR A+T +N Y ++ + + +G+D REGL A++SV V +P+F QTK KL + Sbjct: 321 EGFRTALTTVVNRYAREKRLLRDKDANLSGEDIREGLTAIISVNVGEPQFEGQTKTKLGN 380 Query: 343 SEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAG 402 +EV++ +++ ++E LA++ NP +A +V K + AA AR AAR+AR++TRRKG L+ A Sbjct: 381 TEVRTLLQKIVHEHLADWFDRNPNEAVDIVRKAVQAATARVAARKARDLTRRKGLLETAA 440 Query: 403 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 462 LPGKL+DCQ DPA SE+++VEGDSAGGSAK GRN + QAILP++GKILNVEKAR DK+L Sbjct: 441 LPGKLSDCQSNDPATSEIFIVEGDSAGGSAKAGRNPQYQAILPIRGKILNVEKARIDKVL 500 Query: 463 SSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIV 522 +QE LI+A G G+ D ++ KLRYH II+M DADVDG HI TLLLTF +R M +V Sbjct: 501 QNQENQALISAFGTGVHED-FDIAKLRYHKIILMADADVDGQHISTLLLTFLFRFMRPLV 559 Query: 523 ERGHVYIAQPPLYKVKKGKQ-EQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALE 581 E GHV++++PPLYK+K ++ +Y D + + Sbjct: 560 EEGHVHLSRPPLYKIKWSREHVEYAYSDRERNTLLERGRR-------DGRRIRDDSIQRF 612 Query: 582 KLVSEYNATQKMINRME---RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSE 636 K + E NA + + M+ R + L + + L + ++ R ++ Sbjct: 613 KGLGEMNAEELRVTTMDPDHRVLGQVTLDDAAFADDLFSVLMGEDVEARRHFIQRNAQ 670 Score = 169 bits (427), Expect = 5e-40, Method: Composition-based stats. Identities = 52/188 (27%), Positives = 78/188 (41%), Gaps = 6/188 (3%) Query: 623 EQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFI 682 R L ++ N + + + I+ + VD + Sbjct: 490 NVEKARIDKVLQNQENQALISAFGTGVHEDFDIAKLRYHKIILMADADVDGQHISTLLLT 549 Query: 683 TGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESRRGL------SI 736 + R + I+ A ++ + L++ RR SI Sbjct: 550 FLFRFMRPLVEEGHVHLSRPPLYKIKWSREHVEYAYSDRERNTLLERGRRDGRRIRDDSI 609 Query: 737 QRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENA 796 QR+KGLGEMN E+L TTMDP+ R + +VT+ DA AD LF+ LMG+ VE RR FI+ NA Sbjct: 610 QRFKGLGEMNAEELRVTTMDPDHRVLGQVTLDDAAFADDLFSVLMGEDVEARRHFIQRNA 669 Query: 797 LKAANIDI 804 +DI Sbjct: 670 QDVRFLDI 677 >UniRef50_D0J983 DNA gyrase subunit B n=22 Tax=cellular organisms RepID=D0J983_BLASP Length = 642 Score = 649 bits (1675), Expect = 0.0, Method: Composition-based stats. Identities = 284/639 (44%), Positives = 406/639 (63%), Gaps = 19/639 (2%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 Y + SI+ L+G++ +R RP MYIGD GLHH+V EV+DN++DE+LAG+C +I VT Sbjct: 6 TDYTADSIQSLEGIEHIRLRPSMYIGDVG-IRGLHHLVCEVIDNSVDESLAGYCNKIWVT 64 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 IH + ++V D+GRGIP IH +EG SA EV+MT + AGGKFD NSYKVSGGLHGVG+S Sbjct: 65 IHKNGFITVLDNGRGIPIDIHKKEGKSALEVVMTKIGAGGKFDKNSYKVSGGLHGVGISC 124 Query: 123 VNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEF 182 VNALS++L + + R GKI++Q Y G P + GET GT + + F ++T + Sbjct: 125 VNALSKRLIVTVYRNGKIYQQEYLRGTPIDRVQCLGETHLQGTKIHYLADNSIFNSIT-Y 183 Query: 183 EYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFY 242 YEIL+ RL+EL+FLN G+ + L+D+R+ E+ F + G+K ++ L+KN+ + NI + Sbjct: 184 HYEILSTRLKELAFLNKGLHLFLKDERNNIEEDFFSKNGLKEYLSILDKNQESLIRNIIF 243 Query: 243 FSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD---K 299 EK+ VEVA+Q+N F+E IY + NNI +GGTH++GFR A+TRT Y D Sbjct: 244 IEGEKEDTIVEVAMQYNTSFKEKIYSYVNNINTSEGGTHISGFRRALTRTFKKYTDGLLS 303 Query: 300 EGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAE 359 +KK KV TGDD REGL A++S++V +P+F QTK KL + EV V++ + E+L Sbjct: 304 NKDNKKDKVDLTGDDFREGLTAIISIRVMEPQFEGQTKTKLSNHEVGGIVDKIVGEMLNS 363 Query: 360 YLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSE 419 YL ENP++ + ++ K+I +A+AR+AA++ARE+ ++K + + LPGKLADC +P E Sbjct: 364 YLEENPSERRKIIDKVILSAKARQAAKKARELIQKKSPIYNSILPGKLADCSFNNPENCE 423 Query: 420 LYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIG 479 +YLVEGDSAGG+AKQGR+R QAILPL+GKILNVEKA K+ ++E+ + T+LG IG Sbjct: 424 IYLVEGDSAGGTAKQGRDRSFQAILPLRGKILNVEKAMQYKIFENEEIRNIFTSLGVSIG 483 Query: 480 RDEY----NPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLY 535 +E N KLRY+ IIIMTDAD+DGSHI TL+LT F+R M ++E+GH+YIA PPLY Sbjct: 484 TEEDPKNLNVKKLRYNKIIIMTDADIDGSHISTLILTLFFRYMKPLIEKGHIYIATPPLY 543 Query: 536 KVKKGKQEQYIKDDEAMDQYQISIA-LDGATLHTNASAPALAGEALEKLVSEYNATQKMI 594 ++KG QY DE ++ + + + E L + + Sbjct: 544 LIRKGNHSQYAWSDEEREKILQRLGRRKKINIQRYKGLGEMNAEQL---------WETTM 594 Query: 595 NRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNAL 633 N +R K ++ L + + +E R Sbjct: 595 NPKKRTLRKVHIENLSEADKIFSILMGEEVPPRRSFIEK 633 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 53/185 (28%), Positives = 86/185 (46%), Gaps = 2/185 (1%) Query: 621 SDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHE 680 Q + + + + N ++ + I+ + +D + Sbjct: 459 KAMQYKIFENEEIRNIFTSLGVSIGTEEDPKNLNVKKLRYNKIIIMTDADIDGSHISTLI 518 Query: 681 FITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESRRG-LSIQRY 739 Y + + I +G Q S E+ L + RR ++IQRY Sbjct: 519 LTLFFRYMKPLIEKGHIYIATPPLYLIRKGNHSQYAWSDEEREKILQRLGRRKKINIQRY 578 Query: 740 KGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKA 799 KGLGEMN EQLWETTM+P+ R + +V +++ AD++F+ LMG+ V PRR+FIE+NA+ A Sbjct: 579 KGLGEMNAEQLWETTMNPKKRTLRKVHIENLSEADKIFSILMGEEVPPRRSFIEKNAIHA 638 Query: 800 ANIDI 804 ID+ Sbjct: 639 K-IDV 642 >UniRef50_P34031 DNA gyrase subunit B n=54 Tax=Bacteria RepID=GYRB_SPICI Length = 640 Score = 647 bits (1670), Expect = 0.0, Method: Composition-based stats. Identities = 275/636 (43%), Positives = 394/636 (61%), Gaps = 19/636 (2%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 M ++Y+S SI++L+GL+A+RKRPGMYIG T+ GLHH+V+E+VDN+IDE LA +I Sbjct: 1 MGDNYNSESIQILEGLEAIRKRPGMYIGATN-ARGLHHLVWEIVDNSIDEVLANFANKIK 59 Query: 61 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 + ++ D S++V D+GRGIP IHP+ VS E + T+LHAGGKFD N+YK+SGGLHGVG Sbjct: 60 IILNKDESITVIDNGRGIPIEIHPKTKVSTLETVFTILHAGGKFDSNTYKISGGLHGVGA 119 Query: 121 SVVNALSQKLELVIQREGKIHRQIYEHG-VPQAPLAVTGETEKTGTMVRFWPSLETFTNV 179 SVVNALS+ L++ +++ K + + +G P+ G T +TGT V F P + F Sbjct: 120 SVVNALSKYLKVEVRKNNKKYVMEFHNGGQILTPIKEVGSTSETGTTVTFLPDEKIFKET 179 Query: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDH---FHYEGGIKAFVEYLNKNKTPI 236 T F + + R+++L FLN G+ I L D R+ E+ + + GIK +V LNK Sbjct: 180 TIFSFSTIQNRIKQLVFLNKGLEISLVDLREEDEEKTVLYQFNNGIKDYVLELNKTIGTP 239 Query: 237 HPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAY 296 ++FY +D I VE LQ+ND + ENI+ F NNI +GGTH G R A+ R +N Y Sbjct: 240 LNDVFYVEGIEDNIVVEFGLQYNDNYSENIFSFCNNINTHEGGTHEEGARLAIVREINNY 299 Query: 297 MDK--EGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMN 354 +K + T DD +EG+ ++S++ P+P++ QT KL++SEVK V + Sbjct: 300 FKNQINKNNKGNEDKFTWDDIKEGMTIIISIRHPEPQYEGQTNQKLLNSEVKKIVSNIVG 359 Query: 355 ELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERD 414 + L+ YLLENP DAK ++ KI + +A A+RA+E+TRRK +D LPGKL+DC+ +D Sbjct: 360 KGLSSYLLENPEDAKKIIEKISLSLKATIVAQRAKEITRRKIVMDSFSLPGKLSDCETKD 419 Query: 415 PALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAL 474 ++ELY+VEGDSAGGSAK GRNRK QAILPL+GKILNVEKA+ K+ + E+ ++ITAL Sbjct: 420 AKIAELYIVEGDSAGGSAKSGRNRKFQAILPLRGKILNVEKAKQIKIFENNEINSIITAL 479 Query: 475 GCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPL 534 G GI D +N KLRY +IIMTDADVDG+HIR LLLTFFYR M +++E G++YIAQPPL Sbjct: 480 GAGIK-DNFNDKKLRYQKVIIMTDADVDGAHIRILLLTFFYRYMKDLIENGNIYIAQPPL 538 Query: 535 YKVKKGKQEQYIKDD--EAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQK 592 YKV+ Q +Y+ D + + ++ T+ + E L + Sbjct: 539 YKVENSNQIRYVYSDNELELYKEELLKQNKNYTIQRYKGLGEMNPEQL---------WET 589 Query: 593 MINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTR 628 ++ R K + + + + + Sbjct: 590 TMDPERRLLLKVSVNNAFEANLICNELMGENVEPRK 625 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 50/184 (27%), Positives = 83/184 (45%), Gaps = 2/184 (1%) Query: 623 EQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFI 682 + + + + + N ++ ++ ++ + VD + Sbjct: 457 NVEKAKQIKIFENNEINSIITALGAGIKDNFNDKKLRYQKVIIMTDADVDGAHIRILLLT 516 Query: 683 TGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKES--RRGLSIQRYK 740 Y + + +E + + V S + + + + +IQRYK Sbjct: 517 FFYRYMKDLIENGNIYIAQPPLYKVENSNQIRYVYSDNELELYKEELLKQNKNYTIQRYK 576 Query: 741 GLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAA 800 GLGEMNPEQLWETTMDPE R +L+V+V +A A+ + LMG+ VEPR+ FI ENA Sbjct: 577 GLGEMNPEQLWETTMDPERRLLLKVSVNNAFEANLICNELMGENVEPRKKFIRENAKYVK 636 Query: 801 NIDI 804 N+D+ Sbjct: 637 NLDV 640 >UniRef50_Q1V1K8 DNA topoisomerase (ATP-hydrolyzing) chain B (DNA gyrase B) n=2 Tax=Candidatus Pelagibacter ubique RepID=Q1V1K8_PELUB Length = 685 Score = 644 bits (1662), Expect = 0.0, Method: Composition-based stats. Identities = 326/667 (48%), Positives = 438/667 (65%), Gaps = 42/667 (6%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 ++Y + SIKVLKGL+AVRKRPGMYIGDTDDGTGLHHMV+EVVDN+IDEALAGHCK I V Sbjct: 5 STYQADSIKVLKGLEAVRKRPGMYIGDTDDGTGLHHMVYEVVDNSIDEALAGHCKNIDVK 64 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 I++D +++V+DDGRGIP +H E +SAAEVIMT LHAGGKFD +SYKVSGGLHGVGVSV Sbjct: 65 INSDGTITVRDDGRGIPVDMHKGEKMSAAEVIMTQLHAGGKFDHDSYKVSGGLHGVGVSV 124 Query: 123 VNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEF 182 VNALS+KL+L I R+G + ++ G +APL V G++++TGT + F PS E F+++ +F Sbjct: 125 VNALSEKLKLEIDRDGNRYFIEFKDGASKAPLKVIGKSKETGTQITFLPSKEIFSSI-KF 183 Query: 183 EYEILAKRLRELSFLNSGVSIRLRDKRDGKED--HFHYEGGIKAFVEYL--------NKN 232 I+ KR+REL+FLN G+ I + D KE F ++GG+ FV++L NK Sbjct: 184 TPSIIIKRMRELAFLNKGIKITVNDLNQKKEKIIVFKFDGGVLEFVDFLDEKREKLVNKT 243 Query: 233 KTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRT 292 + Y +KD I +E +L+WN + E+IY +TNNI Q+DGGTHL GFR+A+TR Sbjct: 244 GNDLFKKPIYIEGKKDNIEIECSLKWNASYGEDIYPYTNNIYQKDGGTHLLGFRSALTRV 303 Query: 293 LNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQ 352 +N Y + KK K++ +GDD +EGL V+S K+PDPKFSSQTKDKLVSSEV+ VE Sbjct: 304 INKYATEHNLLKKNKLTISGDDIKEGLTCVISAKIPDPKFSSQTKDKLVSSEVRMIVESI 363 Query: 353 MNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQE 412 ++E L+ + +NPT +KI++ K++ AA AR+ AR+ARE RRKGAL+L+GLPGKLADCQ Sbjct: 364 VSEKLSIWFDQNPTLSKIILAKVMQAALARDVARKARENVRRKGALELSGLPGKLADCQI 423 Query: 413 RDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNV------------------E 454 +EL++VEGDSAGGSAKQGRNR NQA+LPL+GKILN Sbjct: 424 GKQEGTELFIVEGDSAGGSAKQGRNRSNQAVLPLRGKILNTYVEEIVLKKNSNRDGSEHR 483 Query: 455 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFF 514 KM+SS EV TLI ALG ++ + LRY IIIMTDADVDGSHIR LLLTFF Sbjct: 484 TKSLSKMMSSNEVVTLINALGLDPKVEDIDLKDLRYGKIIIMTDADVDGSHIRALLLTFF 543 Query: 515 -YRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAP 573 + +++E GHVY+AQPPL+K+ KG + YIKD++ ++ Y + + + Sbjct: 544 NNKPFNKLIENGHVYLAQPPLFKINKGTKGIYIKDEKELEDYILKNNKELQKIKKGTKEF 603 Query: 574 ALAGEALE--------KLVSEYNATQKMINRMERRYPKAM----LKELIYQPTLTEADLS 621 A E + K + E N + ++ + K++ L + Sbjct: 604 TKAYEDEKSRMSIQRFKGLGEMNPEELWNTTLDPETRNLLQVQYSKDIKKDQDLIHTLMG 663 Query: 622 DEQTVTR 628 ++ + + Sbjct: 664 NDVALRK 670 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 52/241 (21%), Positives = 93/241 (38%), Gaps = 27/241 (11%) Query: 588 NATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQW 647 N + + + + + ++E++ E + S + Sbjct: 448 NRSNQAVLPLRGKILNTYVEEIVL--KKNSNRDGSEHRTKSLSKMMSSNEVVTLINALGL 505 Query: 648 KFDVH-TNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAF 706 V + + + I+ + VD + + L E L + Sbjct: 506 DPKVEDIDLKDLRYGKIIIMTDADVDGSHIRALLLTFFNN-KPFNKLIENGHVYLAQPPL 564 Query: 707 IE--RGERRQPVASFEQALDWLVKESRR--------------------GLSIQRYKGLGE 744 + +G + + ++ D+++K ++ +SIQR+KGLGE Sbjct: 565 FKINKGTKGIYIKDEKELEDYILKNNKELQKIKKGTKEFTKAYEDEKSRMSIQRFKGLGE 624 Query: 745 MNPEQLWETTMDPESRRMLRVTVK-DAIAADQLFTTLMGDAVEPRRAFIEENALKAANID 803 MNPE+LW TT+DPE+R +L+V D L TLMG+ V R+ FI NA+ N+D Sbjct: 625 MNPEELWNTTLDPETRNLLQVQYSKDIKKDQDLIHTLMGNDVALRKDFIVSNAINVQNLD 684 Query: 804 I 804 I Sbjct: 685 I 685 >UniRef50_B6BRC2 DNA gyrase subunit B n=1 Tax=Candidatus Pelagibacter sp. HTCC7211 RepID=B6BRC2_9RICK Length = 686 Score = 639 bits (1649), Expect = 0.0, Method: Composition-based stats. Identities = 333/673 (49%), Positives = 436/673 (64%), Gaps = 51/673 (7%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 N+Y + SIKVLKGL+AVRKRPGMYIGDTDDGTGLHHMV+EVVDN+IDEALAGHCK I V Sbjct: 4 KNTYQADSIKVLKGLEAVRKRPGMYIGDTDDGTGLHHMVYEVVDNSIDEALAGHCKNINV 63 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 I++D +++V DDGRGIP +H E SAAEVIMT LHAGGKFD +SYKVSGGLHGVGVS Sbjct: 64 RINSDGTITVNDDGRGIPVDMHKGEKKSAAEVIMTQLHAGGKFDHDSYKVSGGLHGVGVS 123 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTE 181 VVNALS+KL+L I R+GK H +++G APL + G+++ +GT + F PS E F+ + Sbjct: 124 VVNALSEKLKLEINRDGKKHFIEFKNGEAIAPLKIVGKSKNSGTQITFLPSKEIFS-SIK 182 Query: 182 FEYEILAKRLRELSFLNSGVSIRLRDKRDGKED--HFHYEGGIKAFVEYL--------NK 231 F IL KR+REL+FLN G+ I D KE F ++GG+ FV +L NK Sbjct: 183 FSANILIKRMRELAFLNKGIKIIFTDASLKKEKVSEFKFDGGVLEFVNFLDEKREKLQNK 242 Query: 232 NKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTR 291 N + Y +KD I +E +L+WN + E+I+ +TNNI Q+DGGTHL GFR+A+TR Sbjct: 243 NGNDLFKKPIYIEGKKDNIELECSLKWNASYAEDIFPYTNNIFQKDGGTHLLGFRSALTR 302 Query: 292 TLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQ 351 +N Y ++ KK K++ +GDD +EGL V+S K+PDPKFSSQTKDKLVSSEV+ VE Sbjct: 303 VVNKYANEHNLLKKNKLAISGDDIKEGLTCVLSTKIPDPKFSSQTKDKLVSSEVRMIVET 362 Query: 352 QMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQ 411 +NE L+ + +NP+ AKI++ K+I AA AR+ AR+ARE RRKGAL+L+GLPGKLADCQ Sbjct: 363 VVNEKLSIWFDQNPSVAKIILAKVIQAAMARDVARKARENVRRKGALELSGLPGKLADCQ 422 Query: 412 ERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILN--VEKARFD---------- 459 +EL++VEGDSAGGSAKQGRNR NQA+LPL+GKILN VE Sbjct: 423 IGKQEGTELFIVEGDSAGGSAKQGRNRANQAVLPLRGKILNTYVEDLSVKKNGNGDASEQ 482 Query: 460 -------KMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLT 512 KM+SS E+ TLI ALG E + LRY IIIMTDADVDGSHIR LLLT Sbjct: 483 QRTKALSKMISSNEIVTLINALGLDPKTQEIDLKDLRYGKIIIMTDADVDGSHIRALLLT 542 Query: 513 FF-YRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHT--- 568 FF + +++E GHVY+AQPPL+K+ KG + YIKD+ ++ Y + + + + Sbjct: 543 FFNNKPFNKLIENGHVYLAQPPLFKINKGTKGIYIKDELELENYIVKNSKELKKIKKGSK 602 Query: 569 -------------NASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTL 615 N GE + + + N ++ +Y K +L +L Sbjct: 603 EYIKELELEKSKMNIQRFKGLGEMNPEELWSTTLDPENRNLLQVQYSK----DLKKDQSL 658 Query: 616 TEADLSDEQTVTR 628 + ++ + + Sbjct: 659 IHTLMGNDVALRK 671 Score = 136 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 94/240 (39%), Gaps = 24/240 (10%) Query: 588 NATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQW 647 N + + + + +++L + ++T +E+ Sbjct: 448 NRANQAVLPLRGKILNTYVEDLSVKKNGNGDASEQQRTKALSKMISSNEIVTLINALGLD 507 Query: 648 KFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFI 707 + + + I+ + VD + + L E L + Sbjct: 508 PKTQEIDLKDLRYGKIIIMTDADVDGSHIRALLLTFFNN-KPFNKLIENGHVYLAQPPLF 566 Query: 708 E--RGERRQPVASFEQALDWLVKESRR--------------------GLSIQRYKGLGEM 745 + +G + + + +++VK S+ ++IQR+KGLGEM Sbjct: 567 KINKGTKGIYIKDELELENYIVKNSKELKKIKKGSKEYIKELELEKSKMNIQRFKGLGEM 626 Query: 746 NPEQLWETTMDPESRRMLRVTVKDAIAADQ-LFTTLMGDAVEPRRAFIEENALKAANIDI 804 NPE+LW TT+DPE+R +L+V + DQ L TLMG+ V R+ FI NA+ N+DI Sbjct: 627 NPEELWSTTLDPENRNLLQVQYSKDLKKDQSLIHTLMGNDVALRKDFIISNAINVQNLDI 686 >UniRef50_D0MI55 DNA topoisomerase (ATP-hydrolyzing) n=8 Tax=Bacteria RepID=D0MI55_RHOM4 Length = 648 Score = 639 bits (1648), Expect = 0.0, Method: Composition-based stats. Identities = 267/650 (41%), Positives = 389/650 (59%), Gaps = 13/650 (2%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 ++ +Y I+VL+GL+ VRKRPGMYIG T GLHH+++E+VDNA+DEA+ G I Sbjct: 4 LAATYTGKDIQVLEGLEPVRKRPGMYIGGTGK-PGLHHLLWEIVDNAVDEAVNGFASLIE 62 Query: 61 VTIHADN-SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 119 VT+HAD SV+V D+GRGIP HP + + E+I+T LHAGGKFD +Y SGGLHGVG Sbjct: 63 VTLHADGRSVTVTDNGRGIPVDPHPVKKIPTLELILTTLHAGGKFDRKNYITSGGLHGVG 122 Query: 120 VSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTN 178 SVVNALS++L ++R+GK ++Q + G P+ L V E + TGT + F P E F Sbjct: 123 ASVVNALSEELVATVKRDGKTYQQRFVRGKPKTKLKVVAENTRGTGTSIYFRPDPEIF-E 181 Query: 179 VTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNK--NKTPI 236 TEF+ + + L ++LN + I +D+ G+ FH+EGGI ++ L + + Sbjct: 182 TTEFDPVWIREHLEIKTYLNRNLKIVFKDETSGERYEFHHEGGIVEYLARLVEEQGARVV 241 Query: 237 HPNIFYFSTEK--DGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLN 294 HP F E+ DG +EVALQW + +E I F N IP +GGTH GF+ A+ + Sbjct: 242 HPEPFVLIQEELRDGARLEVALQWTEAPRELIKSFVNGIPTTEGGTHEQGFKEAVRSAVR 301 Query: 295 AYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMN 354 AYM+ + T DD REGL+AVV++ + +P+F QTK+KL + E +S V + Sbjct: 302 AYMETHDLLP-RNLEVTADDIREGLVAVVNLFMVEPQFQGQTKEKLNNPEARSLVIGAVR 360 Query: 355 ELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLA-GLPGKLADCQER 413 L ++L +PT A+ +V +II AA+AR A+R A RR+ ++ LPGKLADC Sbjct: 361 LDLEQFLNAHPTMAEAIVARIIQAAKARLASRAAARSVRRQSSVSHRLNLPGKLADCTST 420 Query: 414 DPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITA 473 +P EL++VEGDSAGGSAKQ R+R+ QA+LPL+GK+LN E+A K+ ++E++ ++ A Sbjct: 421 NPEECELFIVEGDSAGGSAKQARDRRFQAVLPLRGKVLNAEQASLRKVEENKELSNIVQA 480 Query: 474 LGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPP 533 LGCGIG D+ + +LRYH II++ DAD DG HI TLLLTFFYR M ++E GHVY+AQPP Sbjct: 481 LGCGIG-DKIDLSRLRYHKIILLMDADSDGHHITTLLLTFFYRYMRPLIENGHVYVAQPP 539 Query: 534 LYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKM 593 LY++ GK+ + DD D+ + + GE + + E + Sbjct: 540 LYRIDAGKETYWALDDADRDRILQELRKKRKNVQVEIQRFKGLGEMMPDTLRETTLDPRK 599 Query: 594 INRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQH 643 + P+ L+ + T+TE D R++ ++++ + Sbjct: 600 RRLLRVEIPEDA--RLLTEQTITELMGRDVSARFRFIMENAAQVDAEALD 647 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 45/192 (23%), Positives = 74/192 (38%), Gaps = 12/192 (6%) Query: 623 EQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFI 682 ++ + + + I+ + D + + Sbjct: 459 NAEQASLRKVEENKELSNIVQALGCGIGDKIDLSRLRYHKIILLMDADSDGHHI--TTLL 516 Query: 683 TGGEYRRICTLGEKLRGLLEEDAFIE-RGERRQPVASFEQALDWLVKESRRG-----LSI 736 YR + L E + + + A + D +++E R+ + I Sbjct: 517 LTFFYRYMRPLIENGHVYVAQPPLYRIDAGKETYWALDDADRDRILQELRKKRKNVQVEI 576 Query: 737 QRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIA--ADQLFTTLMGDAVEPRRAFIEE 794 QR+KGLGEM P+ L ETT+DP RR+LRV + + +Q T LMG V R FI E Sbjct: 577 QRFKGLGEMMPDTLRETTLDPRKRRLLRVEIPEDARLLTEQTITELMGRDVSARFRFIME 636 Query: 795 NA--LKAANIDI 804 NA + A +D+ Sbjct: 637 NAAQVDAEALDV 648 >UniRef50_A9KS52 DNA topoisomerase (ATP-hydrolyzing) n=33 Tax=Bacteria RepID=A9KS52_CLOPH Length = 642 Score = 638 bits (1645), Expect = 0.0, Method: Composition-based stats. Identities = 262/655 (40%), Positives = 382/655 (58%), Gaps = 29/655 (4%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 Y+ S I VL+GL+AVRKRPGMYIG T GLHH+++E++DN IDE LAG C ++ +T Sbjct: 2 EQYNGSQIVVLEGLEAVRKRPGMYIGSTGT-RGLHHLIWEILDNGIDEHLAGFCNQLEIT 60 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 + D +S+ D GRG+P IHP + + A V+ T+LHAGGKF + YKVSGGLHGVG SV Sbjct: 61 LLKDGGISIADHGRGVPVDIHPTKKIPTARVVYTILHAGGKFGGSVYKVSGGLHGVGASV 120 Query: 123 VNALSQKLELVIQREGKIHRQIYEHG------VPQAPLAVTGETEK--TGTMVRFWPSLE 174 VNALS ++ + I+R+GKI+R YEHG + L V G+ K TGT V F+P Sbjct: 121 VNALSTRMIVEIRRDGKIYRDEYEHGGHPCVELENGMLPVVGKCNKSDTGTKVTFYPDPT 180 Query: 175 TFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKT 234 F EF+ E + K+L+E++FLN +SI D+ G + + E GIK+FV Y+N+ + Sbjct: 181 IF-ETVEFKAETITKKLKEVAFLNKNLSIVFYDQNTGFKKTYCEEFGIKSFVSYINREAS 239 Query: 235 PIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLN 294 IH Y + I VEVALQ+ + F E I + N I DGGT + GF+ A+TR +N Sbjct: 240 VIHEEPIYIEGKSGDIEVEVALQYTNSFSEQINAYCNRINVVDGGTLVTGFKTALTRVMN 299 Query: 295 AYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMN 354 Y + G K+ + G D R GL+ ++S+K PDP+F QTK KL +++ KSAVE + Sbjct: 300 QYARELGVLKEKDENFDGKDIRNGLVTIISIKHPDPQFEGQTKTKLGNTDAKSAVEDVFS 359 Query: 355 ELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERD 414 + + +N K ++ + + AR+A+ +AR ++ L+ KLA C + Sbjct: 360 GEVTRFFDKNVEILKAILENSMRSYTARKASDKARSAVLKQ--LNDIDTKSKLASCSSKK 417 Query: 415 PALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAL 474 P E+Y+VEGDSAGG+ K RNR+ QA+LPL+GKI+NVEKA +K+L + E+ ++I + Sbjct: 418 PEECEVYIVEGDSAGGTVKTARNRRTQAVLPLRGKIINVEKATLEKILVNNEIKSMIASF 477 Query: 475 GCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPL 534 GCGIG D ++ KLRY III+TDADVDG+HI TLLLTFFYR MPE++ G +Y PPL Sbjct: 478 GCGIGED-FDISKLRYDKIIILTDADVDGAHISTLLLTFFYRFMPELIMEGKIYRGLPPL 536 Query: 535 YKV-------KKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEY 587 Y+V KK K+ +YI +D +D+++ + + + E L Sbjct: 537 YRVEYETSEGKKKKKFEYIYNDFELDKFRKNTKHKIIHIQRYKGLGEMDAEQL------- 589 Query: 588 NATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQ 642 + +N R + + + + T +S+ R ++ + Sbjct: 590 --WETTLNPETRVLAQVSITDTVDADETTTLLMSNNVPPRRAFIMDEAKYAKLDI 642 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 49/189 (25%), Positives = 82/189 (43%), Gaps = 8/189 (4%) Query: 623 EQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFI 682 LV+ + + ++ I+ + VD + Sbjct: 455 NVEKATLEKILVNNEIKSMIASFGCGIGEDFDISKLRYDKIIILTDADVDGAHISTLLLT 514 Query: 683 TGGEYRRICTLGEKLRGLLEEDAFIE------RGERRQPVASFEQALDWLVKESRRGL-S 735 + + K+ L +E + +++ + LD K ++ + Sbjct: 515 FFYRFMPELIMEGKIYRGLPPLYRVEYETSEGKKKKKFEYIYNDFELDKFRKNTKHKIIH 574 Query: 736 IQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEEN 795 IQRYKGLGEM+ EQLWETT++PE+R + +V++ D + AD+ T LM + V PRRAFI + Sbjct: 575 IQRYKGLGEMDAEQLWETTLNPETRVLAQVSITDTVDADETTTLLMSNNVPPRRAFIMDE 634 Query: 796 ALKAANIDI 804 A A +DI Sbjct: 635 AKYAK-LDI 642 >UniRef50_P43053 DNA gyrase subunit B n=78 Tax=Bacteria RepID=GYRB_MYCHP Length = 648 Score = 635 bits (1637), Expect = e-180, Method: Composition-based stats. Identities = 258/637 (40%), Positives = 385/637 (60%), Gaps = 24/637 (3%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 + Y++ +I++L+GL+AVRKRPGMYIG GLHH+++E+VDN++DEA+AG EI + Sbjct: 8 HKYNADNIQILEGLEAVRKRPGMYIGSIGF-KGLHHLLWEIVDNSVDEAMAGFATEIKIK 66 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 ++ +N + V+D+GRG+PTGIH SA E I+TVLHAGGKFD ++YKVSGGLHGVG SV Sbjct: 67 LYPNNVIEVEDNGRGMPTGIHSGTKKSAVETILTVLHAGGKFDGSNYKVSGGLHGVGASV 126 Query: 123 VNALSQKLELVIQREGKIHRQIYEHG-VPQAPLAVTGETEK--TGTMVRFWPSLETFTNV 179 VNALS + E+ ++R+GK+H Q + +G +P PL V G + TGT ++F P Sbjct: 127 VNALSSEFEVWVKRDGKLHYQQFRNGGIPVKPLEVIGNVSEVETGTTIKFHPDYTIM-EK 185 Query: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPN 239 F+++ + +++++LN G+ I + + F +EGG+ +V+ LNK K I P Sbjct: 186 ENFDFDTIIDHSKQIAYLNKGLKITVENVEKNIIKVFCFEGGLIDYVKELNKGKKLIVPE 245 Query: 240 IFYFSTEKDG--------IGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTR 291 + Y + + VEVA+Q+N+ + +I + NNI DGGTH GF A+ R Sbjct: 246 VIYAEGVFNDKNFTNGQDVIVEVAMQYNEAYTNSIVSYANNIQTIDGGTHEQGFYDALVR 305 Query: 292 TLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQ 351 N Y + K + T +D +EGL+A++S+K DP F QTK KL + + + A + Sbjct: 306 IYNNYAETNKLFKTSSEKITREDVKEGLVAIISIKHTDPIFEGQTKGKLENKDARIATNK 365 Query: 352 QMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQ 411 +++ L YL ENP A+ ++ K + + R +ARE +R+ LDL LPGKLADC Sbjct: 366 ILSDSLERYLNENPEIARAIIEKCLLSQHTRLLEIKAREASRKGNGLDLGNLPGKLADCS 425 Query: 412 ERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLI 471 ++ + EL++VEG+SAGGSAK GR+R QAILPL+GK++N EK F +LS++E+AT+I Sbjct: 426 SKNAEIRELFIVEGNSAGGSAKMGRDRSIQAILPLRGKVINAEKNSFASVLSNKEIATMI 485 Query: 472 TALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQ 531 ALG GI E++ +KL+YH IIIMTDADVDG+HI TLLLTFFYR M ++E G VY+AQ Sbjct: 486 HALGTGINT-EFDINKLKYHKIIIMTDADVDGAHITTLLLTFFYRYMKPLIEYGFVYLAQ 544 Query: 532 PPLYKVKKGKQEQYIKDDEAMDQYQISIALD-GATLHTNASAPALAGEALEKLVSEYNAT 590 PPLYK+ GK +Y +D +Q + + + E L Sbjct: 545 PPLYKITSGKNVEYAYNDLQKEQIMAKLEDKRNVAIQRYKGLGEMDPEQL---------W 595 Query: 591 QKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVT 627 + ++ R+ + + + T+ + +E Sbjct: 596 ETTMDPETRKMLQVQIDDAAICDTVFATLMGEEIEPR 632 Score = 173 bits (437), Expect = 4e-41, Method: Composition-based stats. Identities = 59/183 (32%), Positives = 88/183 (48%), Gaps = 1/183 (0%) Query: 623 EQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFI 682 + + L ++ H + + + + I+ + VD + Sbjct: 466 NAEKNSFASVLSNKEIATMIHALGTGINTEFDINKLKYHKIIIMTDADVDGAHITTLLLT 525 Query: 683 TGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVK-ESRRGLSIQRYKG 741 Y + + I G+ + + Q + K E +R ++IQRYKG Sbjct: 526 FFYRYMKPLIEYGFVYLAQPPLYKITSGKNVEYAYNDLQKEQIMAKLEDKRNVAIQRYKG 585 Query: 742 LGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAAN 801 LGEM+PEQLWETTMDPE+R+ML+V + DA D +F TLMG+ +EPR FI+ENA A N Sbjct: 586 LGEMDPEQLWETTMDPETRKMLQVQIDDAAICDTVFATLMGEEIEPRHDFIQENAKYANN 645 Query: 802 IDI 804 IDI Sbjct: 646 IDI 648 >UniRef50_P66938 DNA topoisomerase 4 subunit B n=158 Tax=Bacteria RepID=PARE_STAAM Length = 663 Score = 632 bits (1630), Expect = e-179, Method: Composition-based stats. Identities = 294/673 (43%), Positives = 411/673 (61%), Gaps = 27/673 (4%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 N+Y SI+VL+GL+AVRKRPGMYIG TD GLHH+V+E+VDN++DE L G+ EI VT Sbjct: 5 NNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGYGNEIDVT 63 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 I+ D S+S++D+GRG+PTGIH + G EVI TVLHAGGKF YK SGGLHGVG SV Sbjct: 64 INKDGSISIEDNGRGMPTGIH-KSGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASV 122 Query: 123 VNALSQKLELVIQREGKIHRQIYEHGV-PQAPLAVTGETEKTGTMVRFWPSLETFTNVTE 181 VNALS+ LE+ I R+G I+ Q +++G P + L G+T+KTGT V F P F T Sbjct: 123 VNALSEWLEVEIHRDGSIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKASTS 182 Query: 182 FEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHPN 239 F +++L++RL+E +FL + I L D R GKE +H+HYE GIK FV Y+N+ K +H + Sbjct: 183 FNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEGKEVLH-D 241 Query: 240 IFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDK 299 + FS E +GI V+VA Q+ND + E+I F NN+ +DGGTH GF+ AMTR N Y + Sbjct: 242 VATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDYARR 301 Query: 300 EGYSKKAKVSATGDDAREGLIAVVSVKVPDP--KFSSQTKDKLVSSEVKSAVEQQMNELL 357 K + G+D REGL AVVSV++P+ +F QTK KL +SE +SAV+ + + L Sbjct: 302 INELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVDSVVADKL 361 Query: 358 AEYLLENPTDAKIVVGKIIDAARAREAARRAREMTR--RKGALDLAGLPGKLADCQERDP 415 YL E +K +V K I A +AREAAR+ARE R +K L GKL Q ++ Sbjct: 362 PFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNT 421 Query: 416 ALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALG 475 +ELYLVEGDSAGGSAK GR+RK QAILPL+GK++N EKAR + + ++E+ T+I +G Sbjct: 422 EKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIG 481 Query: 476 CGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLY 535 G+G D + + Y+ +IIMTDAD DG+HI+ LLLTFF++ M +V+ G V+IA PPLY Sbjct: 482 AGVGTD-FKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLY 540 Query: 536 KVKKG----KQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQ 591 K++KG K+ +Y DE +++ Q + G TL + E L + Sbjct: 541 KLEKGKGKTKRVEYAWTDEELNKLQKELG-KGFTLQRYKGLGEMNPEQL---------WE 590 Query: 592 KMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALV--SELNDKEQHGSQWKF 649 +N R + +++ + + D+ R + + + + Sbjct: 591 TTMNPETRTLIRVQVEDEVRSSKRVTTLMGDKVQPRREWIEKHVEFGMQEDQSILDNSEV 650 Query: 650 DVHTNAEQNLFEP 662 V N + + E Sbjct: 651 QVLENDQFDEEEI 663 Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats. Identities = 62/259 (23%), Positives = 109/259 (42%), Gaps = 6/259 (2%) Query: 541 KQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERR 600 K+ + + A G + L+G+ + + + Sbjct: 377 KKAIKAQQAREAARKAREDARSGKKNKRKDTL--LSGKLTPAQSKNTEKNELYLVEGDSA 434 Query: 601 YPKAML-KELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNL 659 A L ++ +Q L R + +E + H E + Sbjct: 435 GGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGTDFKIEDSN 494 Query: 660 FEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQ---PV 716 + ++ + D + +Y + ++ L +E+G+ + Sbjct: 495 YNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEY 554 Query: 717 ASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQL 776 A ++ L+ L KE +G ++QRYKGLGEMNPEQLWETTM+PE+R ++RV V+D + + + Sbjct: 555 AWTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKR 614 Query: 777 FTTLMGDAVEPRRAFIEEN 795 TTLMGD V+PRR +IE++ Sbjct: 615 VTTLMGDKVQPRREWIEKH 633 >UniRef50_B7G298 Predicted protein n=3 Tax=cellular organisms RepID=B7G298_PHATR Length = 727 Score = 631 bits (1626), Expect = e-179, Method: Composition-based stats. Identities = 276/665 (41%), Positives = 385/665 (57%), Gaps = 39/665 (5%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 + SY + I VLKGLD VRKRPGMYIG T GLHH+V+EVVDN +DEALAGH + Sbjct: 63 AQSYGAGQITVLKGLDPVRKRPGMYIGSTG-PDGLHHLVWEVVDNCVDEALAGHATFVTT 121 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNS----YKVSGGLHG 117 TIHAD S++V DDGRGIPT +H E G SA E ++T LHAGGKFD+ YKVSGGLHG Sbjct: 122 TIHADGSLTVTDDGRGIPTDLHSETGKSALETVLTELHAGGKFDNQGSNSGYKVSGGLHG 181 Query: 118 VGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGE------TEKTGTMVRFWP 171 VG+SVVNALS+ + + + R ++++ +E GVP PL + K+GT V F P Sbjct: 182 VGISVVNALSEFVHVKVDRTPELYQMRFERGVPTGPLQNLDKLKTLLSKRKSGTSVTFLP 241 Query: 172 SLETFTNVT-----EFEYEILAKRLRELSFLNSGVSIRLRDKRD----GKEDHFHYEGGI 222 L+ F F+ L R+ E+++LN+G+ + L+D+R G+ F++ GG+ Sbjct: 242 DLKVFKGDNGKPDITFDSSRLKGRMDEIAYLNAGLVLTLKDERKSPGRGRLQVFYHAGGL 301 Query: 223 KAFVEYLNKNKTPIHPNIFY------FSTEKDGIGVEVALQWN-DGFQENIYCFTNNIPQ 275 + E L + KTP+ +KD + AL+W+ D + E+I F NNI Sbjct: 302 AEYAELLCRTKTPLFQGTTSSRKKKPARKQKDSASDDDALRWSSDMYAESILSFCNNIRT 361 Query: 276 RDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQ 335 RDGG+H+ G +A +TRT+N + +K+ + G+ REGL A+VSV V +P+F Q Sbjct: 362 RDGGSHVEGLKACLTRTVNQAAKRSNKAKEGAANLPGEFIREGLTAIVSVSVSEPEFEGQ 421 Query: 336 TKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRK 395 TK +L + EV+ AV+ ++ L + P + K A A AA+ AR+M RRK Sbjct: 422 TKGRLGNPEVRPAVDSLLSAELTKLFDFRPEILDAIYNKASSAQAAAAAAKAARDMVRRK 481 Query: 396 GALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 455 L LPGKLADC RDP SE+++VEGDSA GSAKQGR+R+ QAILPL+GKILN+E+ Sbjct: 482 TLLTSTILPGKLADCASRDPEESEIFIVEGDSAAGSAKQGRDRRTQAILPLRGKILNIER 541 Query: 456 ARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFY 515 A +++ + E+ LI+ALG G+ E++P LRY I+IMTDADVDG+HIR LLLTFFY Sbjct: 542 AATERIYQNTELQGLISALGLGVKGSEFDPKSLRYGRIVIMTDADVDGAHIRVLLLTFFY 601 Query: 516 RQMPEIVERGHVYIAQPPLYKVKKG----KQEQYIKDDEAMDQYQISIALDGATLHTNAS 571 R E+VE GHVYIAQPPLYKV G ++E Y +D + + G + Sbjct: 602 RYQRELVENGHVYIAQPPLYKVSVGSGRSRKEGYAFNDTERNTVMMQALAAG---KVSLQ 658 Query: 572 APALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVN 631 GE + + + ++ R + + + + D + Sbjct: 659 RFKGLGEMMPEQL-----WSTTMDPERRTMLQVTVNDASMADQTLSILMGDTVAPRKEFI 713 Query: 632 ALVSE 636 + +E Sbjct: 714 STQAE 718 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 52/162 (32%), Positives = 78/162 (48%), Gaps = 11/162 (6%) Query: 652 HTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIE--- 708 + + + IV + VD + + YR L E + + + Sbjct: 568 EFDPKSLRYGRIVIMTDADVDGAHI--RVLLLTFFYRYQRELVENGHVYIAQPPLYKVSV 625 Query: 709 ---RGERRQPVASFEQALDWLVK-ESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLR 764 R + + + +++ + +S+QR+KGLGEM PEQLW TTMDPE R ML+ Sbjct: 626 GSGRSRKEGYAFNDTERNTVMMQALAAGKVSLQRFKGLGEMMPEQLWSTTMDPERRTMLQ 685 Query: 765 VTVKDAIAADQLFTTLMGDAVEPRRAFIEENA--LKAANIDI 804 VTV DA ADQ + LMGD V PR+ FI A L+ ++D+ Sbjct: 686 VTVNDASMADQTLSILMGDTVAPRKEFISTQAETLRVDDLDL 727 >UniRef50_Q2NJM1 DNA gyrase subunit B n=5 Tax=Mollicutes RepID=Q2NJM1_AYWBP Length = 671 Score = 628 bits (1620), Expect = e-178, Method: Composition-based stats. Identities = 276/678 (40%), Positives = 401/678 (59%), Gaps = 46/678 (6%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 +Y++ SI++L+GL+AVRKRPGMYIG T GLHH+V+E+VDN+IDEALAGH I + Sbjct: 2 KNYNADSIQILEGLEAVRKRPGMYIGST-AQKGLHHLVWEIVDNSIDEALAGHANNITLE 60 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 I +SV D+GRGIP IHP+ G A E I+T LHAGGKFD +SYKVSGGLHGVG SV Sbjct: 61 ILPGEIISVSDNGRGIPVDIHPKTGKPAVETILTTLHAGGKFDSSSYKVSGGLHGVGASV 120 Query: 123 VNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEF 182 VNALS + I+ +I+ Q YE G+ +PL V G T K GT ++F E F T + Sbjct: 121 VNALSNWFTVEIRLNKQIYFQKYEKGIAVSPLEVIGGTNKRGTTIQFLSDPEIFQETTIY 180 Query: 183 EYEILAKRLRELSFLNSGVSIRLRDKRDGKEDH--FHYEGGIKAFVEYLNKN-KTPIHPN 239 ++ L +R+++LSFLN G+ +++ DKR KE F +E G++ +++++N + K Sbjct: 181 NFDTLKERMQQLSFLNKGLKLKIADKRYEKETVFNFCHEKGLQDYIDFINTSHKQIPFHE 240 Query: 240 IFYFSTEKDGIGVEVALQWNDGF--------------------------QENIYCFTNNI 273 IFY E + E+ ++ + I+ F NNI Sbjct: 241 IFYLEKEAQKLAFEIVFEYTTQLRPTKKDEQGNEIEEKEDKDTIPRYTQSQKIFSFVNNI 300 Query: 274 PQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFS 333 P +GGTH GF+ A+TR ++ Y + KK + + +D EG+ A++S+K DP+F Sbjct: 301 PTHEGGTHEEGFKLALTRVISKYAKEFNLLKKDEHLLS-EDILEGITAIISLKHQDPQFE 359 Query: 334 SQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTR 393 QTK KL ++EV+ Q E L +YLLE+P D++ ++ K + +A AR AA+RARE+ R Sbjct: 360 GQTKAKLANTEVRQITSQLFGEFLEKYLLEHPQDSRKIIDKCLLSANARLAAKRAREVVR 419 Query: 394 RKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 453 K LD G KLADC+ +DP +SELY+VEGDSAGGSAKQGR+ + QAILPL+GK+LNV Sbjct: 420 NK-PLDSLGFASKLADCRSKDPHISELYIVEGDSAGGSAKQGRDSRFQAILPLRGKVLNV 478 Query: 454 EKARFDKMLSSQEVATLITALGCGIGR---DEYNPDKLRYHSIIIMTDADVDGSHIRTLL 510 EK+ K+L+++E+ +LI A+G GI ++N DK+RYH IIIMTDADVDG+HIRTLL Sbjct: 479 EKSLDAKILTNKEIKSLIQAIGAGINIGKGKDFNVDKIRYHKIIIMTDADVDGAHIRTLL 538 Query: 511 LTFFYRQMPEIVERGHVYIAQPPLYKVKKGK-QEQYIKDDEAMDQYQISIALDGATLHTN 569 LTFF+R E++E+G++Y A+PPLYK +KGK +Y D++ + + +L Sbjct: 539 LTFFFRHFRELIEKGYIYFARPPLYKYQKGKGTPKYFYDEKTKQTF-----ANKNSLKDG 593 Query: 570 ASAPALAGEALEKLVSEYNATQKMINRMERRYPKAML-----KELIYQPTLTEADLSDEQ 624 GE + E + ++ A+ + L+ + ++ Sbjct: 594 FQRYKGLGEMNPNQLWETTMDPENRTLLKASLKDALNALSDEEALMETDQTFNMLMGEKV 653 Query: 625 TVTRWVNALVSELNDKEQ 642 + + D + Sbjct: 654 LPRKNFILEKALEADLDV 671 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 55/199 (27%), Positives = 83/199 (41%), Gaps = 15/199 (7%) Query: 618 ADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPL 677 ++ N + L G N ++ + I+ + VD + Sbjct: 476 LNVEKSLDAKILTNKEIKSLIQAIGAGINIGKGKDFNVDKIRYHKIIIMTDADVDGAHI- 534 Query: 678 DHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESRRGLS-- 735 + +R L EK + + + F ++ L Sbjct: 535 -RTLLLTFFFRHFRELIEKGYIYFARPPLYKYQKGKGTPKYFYDEKTKQTFANKNSLKDG 593 Query: 736 IQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDA----------IAADQLFTTLMGDAV 785 QRYKGLGEMNP QLWETTMDPE+R +L+ ++KDA + DQ F LMG+ V Sbjct: 594 FQRYKGLGEMNPNQLWETTMDPENRTLLKASLKDALNALSDEEALMETDQTFNMLMGEKV 653 Query: 786 EPRRAFIEENALKAANIDI 804 PR+ FI E AL+A ++D+ Sbjct: 654 LPRKNFILEKALEA-DLDV 671 >UniRef50_UPI0001A7B046 ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Arabidopsis thaliana RepID=UPI0001A7B046 Length = 693 Score = 628 bits (1620), Expect = e-178, Method: Composition-based stats. Identities = 284/686 (41%), Positives = 408/686 (59%), Gaps = 56/686 (8%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 S Y S I+VL+GLD VRKRPGMYIG T GLHH+V+E++DNAIDEA AG +I V Sbjct: 14 SKDYSSEHIQVLEGLDPVRKRPGMYIGSTG-SRGLHHLVYEILDNAIDEAQAGFASKIDV 72 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNS--YKVSGGLHGVG 119 +H+D+SVS+ D+GRGIPT +HP G S+ E ++TVLHAGGKF S Y VSGGLHGVG Sbjct: 73 VLHSDDSVSISDNGRGIPTDLHPATGKSSLETVLTVLHAGGKFGGKSSGYSVSGGLHGVG 132 Query: 120 VSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPL---AVTGETEKT-GTMVRFWPSLE- 174 +SVVNALS+ LE++++R+G +Q Y G P L + E+ T GT +RFWP E Sbjct: 133 LSVVNALSEALEVIVRRDGMEFQQKYSRGKPVTTLTCHVLPPESRGTQGTCIRFWPDKEG 192 Query: 175 --TFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE----DHFHYEGGIKAFVEY 228 FT +F++ +A R+REL+FLN V+I L+ + D E + Y GG+ +V + Sbjct: 193 FALFTTAIQFDHNTIAGRIRELAFLNPKVTISLKKEDDDPERDVYSEYFYAGGLTEYVSW 252 Query: 229 LNKNKTPIHPNIFYFSTEKDGIGVEVALQW-NDGFQENIYCFTNNIPQRDGGTHLAGFRA 287 LN +K P+H ++ F E +G V+V+LQW +D + + + + N+I DGGTH+ G +A Sbjct: 253 LNTDKKPLH-DVLGFRKEINGSTVDVSLQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKA 311 Query: 288 AMTRTLNAYMDKEGYSK--------------------------------KAKVSATGDDA 315 ++TRTLN+ K K + +S +G+ Sbjct: 312 SLTRTLNSLAKKLKVIKVKGYIIYSSPWIETKFKYSSALKRHALRTINNEKDISLSGEHV 371 Query: 316 REGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKI 375 REGL +VSVKVP+P+F QTK +L + EV+ V+Q + E L EYL +P + ++ K Sbjct: 372 REGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEYLELHPDVLESIISKS 431 Query: 376 IDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQG 435 ++A +A AA+RARE+ R K L + LPGKLADC DPA SE+++VEGDSAGGSAKQG Sbjct: 432 LNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPAESEIFIVEGDSAGGSAKQG 491 Query: 436 RNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 495 R+R+ QAILPL+GKILN+E+ M ++E+ LI LG G+ +++N + LRYH III Sbjct: 492 RDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFNKENLRYHKIII 551 Query: 496 MTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQY 555 +TDADVDG+HIRTLLLTFF+R + + G +Y+ PPL+KV++GKQ Y DD A+ + Sbjct: 552 LTDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVERGKQAHYCYDDAALKKI 611 Query: 556 QISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTL 615 S + N GE + + + +N R + ++ + + Sbjct: 612 TASFPGNA---SYNIQRFKGLGEMMPAQL-----WETTMNPDTRILKQLVVDDAAETNMV 663 Query: 616 TEADLSDEQTVTRWVNALVSELNDKE 641 + + V + + + + E Sbjct: 664 FSSLMGARVDVRKELIKSAATRMNLE 689 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 44/186 (23%), Positives = 75/186 (40%), Gaps = 3/186 (1%) Query: 622 DEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEF 681 + + E+ + N E + I+ + VD + Sbjct: 508 NIERKDEAAMYKNEEIQNLILGLGLGVKGEDFNKENLRYHKIIILTDADVDGAHIRTLLL 567 Query: 682 ITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKE-SRRGLSIQRYK 740 Y+R + + +ERG++ +IQR+K Sbjct: 568 TFFFRYQRALFDAGCIYVGVPPLFKVERGKQAHYCYDDAALKKITASFPGNASYNIQRFK 627 Query: 741 GLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENA--LK 798 GLGEM P QLWETTM+P++R + ++ V DA + +F++LMG V+ R+ I+ A + Sbjct: 628 GLGEMMPAQLWETTMNPDTRILKQLVVDDAAETNMVFSSLMGARVDVRKELIKSAATRMN 687 Query: 799 AANIDI 804 N+DI Sbjct: 688 LENLDI 693 >UniRef50_B3TAI0 Putative DNA gyrase B n=1 Tax=uncultured marine microorganism HF4000_APKG8D23 RepID=B3TAI0_9ZZZZ Length = 646 Score = 616 bits (1588), Expect = e-174, Method: Composition-based stats. Identities = 295/635 (46%), Positives = 413/635 (65%), Gaps = 17/635 (2%) Query: 25 MYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHP 84 M++GD DG+ LHH ++EVVDNA+DE LAG+ + V + + SV+V D GRGIP G P Sbjct: 1 MFLGDPHDGSALHHCIWEVVDNAVDEHLAGYNSTVEVNLEKNGSVTVIDHGRGIPVGKIP 60 Query: 85 EEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQI 144 EEGVSAAEVIMT LHAGGKFD+ +YKV+GGLHGVGVS VNA+S+KL + I R+GK+ Q Sbjct: 61 EEGVSAAEVIMTKLHAGGKFDNKAYKVAGGLHGVGVSAVNAVSEKLSMTIHRDGKVWTQN 120 Query: 145 YEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIR 204 + G +A L TG+T TGT + F P ++ F++VT+F++E + RLR +FLN+G+ I Sbjct: 121 FVRGKRKAVLKATGKTTSTGTTINFKPDMKIFSDVTDFDFEQINTRLRRTAFLNAGLQIW 180 Query: 205 LRDKR--DGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIG----VEVALQW 258 LRD R D E Y+GG++ +VE +N+ K IH + + KDG VEVALQW Sbjct: 181 LRDFRGQDTVEIEHKYDGGLRQYVESMNEKKKAIHDEVIHILGSKDGDKGEVLVEVALQW 240 Query: 259 NDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREG 318 D + E+I+CFTN I DGG HL+G ++++TRT+N+Y K S +GDD REG Sbjct: 241 TDAYSESIHCFTNIIHNTDGGAHLSGLKSSLTRTVNSYAQSRKLLK-NVSSLSGDDVREG 299 Query: 319 LIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDA 378 L AV+S+K PDP F++QTK KLV+SEV VEQ +N+ L +Y ENP A+ +V K++ A Sbjct: 300 LSAVISIKHPDPSFNAQTKAKLVTSEVAGIVEQIVNDKLGDYFEENPAVARSIVEKVVLA 359 Query: 379 ARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNR 438 ++AREAAR+AR++TRRKG L+ GLPG+LADCQ RDPA ELY+VEG+SAGGSAK R+R Sbjct: 360 SKAREAARKARDLTRRKGVLEGGGLPGQLADCQSRDPAECELYIVEGESAGGSAKTARDR 419 Query: 439 KNQAILPLKGKILNVEKA--RFDKMLSSQEVATLITALGCGIGRDE-----YNPDKLRYH 491 + QA+LPL+GKILNVE+ K+ S++++ +I ALG G+G +E ++P+KLRY Sbjct: 420 RTQAVLPLRGKILNVERQQRNLTKVFSNEQIQRMIRALGAGVGNEEEDEGAFDPEKLRYG 479 Query: 492 SIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEA 551 IIIMTDAD+DG+HIRTL+LTF +R M + G+VYIA PPL+ V +GK +++ ++ Sbjct: 480 KIIIMTDADIDGAHIRTLILTFMWRFMRRAIANGNVYIAAPPLFSVSRGKHTEWVHTEKD 539 Query: 552 MDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIY 611 D + + T N GE + + + + + + P+ + Sbjct: 540 RDAVVKRLQKEAPTAKINVQRYKGLGEMNPEQLWQTTMDPESRTMFQVKMPEKPSEVRFT 599 Query: 612 QPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQ 646 +SDE+ V VN L S L ++ + Sbjct: 600 D---VGEQMSDEEAVEGEVNELFSILMGEDVPDRR 631 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 47/187 (25%), Positives = 78/187 (41%), Gaps = 28/187 (14%) Query: 644 GSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEE 703 G++ + + + E+ + I+ + +D + I +R + + Sbjct: 462 GNEEEDEGAFDPEKLRYGKIIIMTDADIDGAHI--RTLILTFMWRFMRRAIANGNVYIAA 519 Query: 704 DAFIERGERRQPVASFEQA------LDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDP 757 + + + +++QRYKGLGEMNPEQLW+TTMDP Sbjct: 520 PPLFSVSRGKHTEWVHTEKDRDAVVKRLQKEAPTAKINVQRYKGLGEMNPEQLWQTTMDP 579 Query: 758 ESRRMLRVTVKD--------------------AIAADQLFTTLMGDAVEPRRAFIEENAL 797 ESR M +V + + ++LF+ LMG+ V RRAFIE+NA Sbjct: 580 ESRTMFQVKMPEKPSEVRFTDVGEQMSDEEAVEGEVNELFSILMGEDVPDRRAFIEKNAS 639 Query: 798 KAANIDI 804 K +D+ Sbjct: 640 KVTALDV 646 >UniRef50_Q10XN8 DNA gyrase subunit B n=6 Tax=Bacteria RepID=Q10XN8_TRIEI Length = 891 Score = 612 bits (1577), Expect = e-173, Method: Composition-based stats. Identities = 312/896 (34%), Positives = 435/896 (48%), Gaps = 100/896 (11%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 SN+Y + I+VL+GL+AVRKRPGMYIG T GLHH+V+EVVDN+IDEALAG+C I V Sbjct: 3 SNNYGAEQIQVLEGLEAVRKRPGMYIGTTG-PRGLHHLVYEVVDNSIDEALAGYCTHIEV 61 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 ++ D SV V DDGRGIP H + G SA E +MTVLHAGGKF YKVSGGLHGVGVS Sbjct: 62 DLNKDGSVKVTDDGRGIPVDTHSKTGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVGVS 121 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLA-VTGETEKTGTMVRFWPSLETFTNVT 180 VVNALS+ +E+ + R+ K H Q YE G P L + ++TGT V+F P E FT Sbjct: 122 VVNALSEWVEVTVWRDKKTHIQGYERGQPTGDLKSKPNKEKRTGTSVQFLPDQEIFTTGI 181 Query: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKR-------DGKEDHFHYEGGIKAFVEYLNKNK 233 +F+Y + RLREL++LN+GV I + D R + K + + YEGGIK +V Y+N+ K Sbjct: 182 QFDYNTIIGRLRELAYLNAGVKITITDNRLELVKSDEPKVESYCYEGGIKEYVTYMNREK 241 Query: 234 TPIHPNIFYFSTEKDGIGVEVALQWN-DGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRT 292 +H + + EK+ + VEVALQW D F +N+ F NNI DGGTHL G + +TRT Sbjct: 242 QSLHEEVIFVRGEKNDVQVEVALQWCIDAFSDNVLGFANNIRTIDGGTHLEGLKTVLTRT 301 Query: 293 LNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQ 352 +N K K + + G++ REGL AV+SVKVP+P+F QTK KL ++EV+ V+ Sbjct: 302 MNGIARKRNKLKDSDPNLGGENVREGLTAVISVKVPEPEFEGQTKTKLGNTEVRGIVDSL 361 Query: 353 MNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQE 412 + E+L+EYL NP A V+ K I A +A EAARRAR++ RRK L+ + LPGKLADC Sbjct: 362 VGEVLSEYLDFNPQVADAVLDKAIQAFKAAEAARRARDLVRRKSVLESSPLPGKLADCST 421 Query: 413 RDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEV----- 467 ++P SE+YLVEGDSA G NQ ++ G+ L+ + ++ + Sbjct: 422 KNPEESEIYLVEGDSASGCFAG-----NQKVILADGRRLSFAEIVAEQAEGKEHFCYTIN 476 Query: 468 ----ATLITALGCGIGRDEYNPDKLRYHS--IIIMTDADV-----DGSHIRTLLLTFFYR 516 + + I + + K+ + II T D DGS+ LLT Sbjct: 477 QSGNVAIERIINARITKKNASVIKIILDNNETIICT-PDHLFMLRDGSYKPAALLTGNDS 535 Query: 517 QMP------------------EIV----ERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQ 554 MP E+V + +Y P + K Q D Sbjct: 536 LMPLSQKSSQKTENSQELDGYEMVWSPQKESWIYTHLLPDFYNLKAGVYQSANGDSCYHV 595 Query: 555 YQISIALDGAT--LHTNASAPALAGEAL------------EKLVSEYNATQKM----INR 596 + L L ++ YN I Sbjct: 596 GFKKLNSTKTEGLLTEKHLEFHKTNLELAYRCSERDEFLARDIIPNYNDHYNYRVVSIEP 655 Query: 597 MERRYPKAMLK-----ELIYQPTLTEADLSDEQTVTRWVNAL------------------ 633 +E R ++ + + + + R+ L Sbjct: 656 LEERLDVYDIEVPNTHNFALASGVFVHNSAKQGRDRRFQAILPLRGKIINIEKTDDAKIY 715 Query: 634 VSELNDKEQHGSQWKFD-VHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICT 692 + +A Q + ++ + VD + Y+R Sbjct: 716 KNNEIQSMITALGLGIKGDEFDASQLRYHKVIIMTDADVDGSHIRTLLLTFFYRYQRALV 775 Query: 693 LGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKE--SRRGLSIQRYKGLGEMNPEQL 750 + +ERG S + + + E +IQR+KGLGEM P QL Sbjct: 776 DQGYIYIACPPLYKVERGRNHYYCYSDRELNELIQNEFPDNANYTIQRFKGLGEMMPVQL 835 Query: 751 WETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENA--LKAANIDI 804 W+TTM+PE+R + RV ++DA AD++FT LMGD V PRR FIE LK ++DI Sbjct: 836 WDTTMNPETRTLKRVEIEDAAEADRIFTVLMGDRVAPRREFIETYGPKLKITDLDI 891 >UniRef50_D1BTM8 DNA topoisomerase (ATP-hydrolyzing) n=8 Tax=Actinobacteria (class) RepID=D1BTM8_XYLCX Length = 715 Score = 612 bits (1577), Expect = e-173, Method: Composition-based stats. Identities = 240/700 (34%), Positives = 362/700 (51%), Gaps = 73/700 (10%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 +Y + + VL+GL+AVRKRPGMYIG TD GL H ++E++DN++DEAL G +I V Sbjct: 14 KNYTARHLSVLEGLEAVRKRPGMYIGSTD-SRGLMHCLWEIIDNSVDEALGGFATKIAVV 72 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 +HAD+SV+V DDGRGIP + P+ G+S EV+ T LHAGGKF SY SGGLHGVG SV Sbjct: 73 LHADSSVTVTDDGRGIPVDVEPKTGLSGVEVVFTKLHAGGKFGGGSYTASGGLHGVGASV 132 Query: 123 VNALSQKLELVIQREGKIHRQIYEHGVP---------------------QAPLAVTGETE 161 VNALS +L++ + R GK +R + G P ++ LAV G + Sbjct: 133 VNALSARLDVEVDRGGKTYRMTFHRGEPGTFADGPAGASPESAFSPFIERSELAVVGRAK 192 Query: 162 K--TGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKR---------D 210 + TGT VR+W + F F Y+ L R+R+ +FL G+ I +RD+R Sbjct: 193 RGVTGTRVRYWADRQIFPKSAVFSYDELVTRVRQTTFLVPGLEITVRDERGLPGTPGADG 252 Query: 211 GKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTE-------------------KDGIG 251 E+ F + GG FV++L + S + Sbjct: 253 PHEEMFVHHGGAVDFVDFLAPDAPVTATWTLRGSETFTETVPVLDERGHMSPREVQRDCE 312 Query: 252 VEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGY-----SKKA 306 V++AL+W G+ + F N I GG+HL GF + + + ++ +K Sbjct: 313 VDIALRWGTGYDTELRTFVNIIATPKGGSHLTGFEQGLVKVVRKQVEANARRLKISAKDG 372 Query: 307 KVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYL----L 362 DD GL AVV+V++ +P+F QTK+ L ++ V++ V + + + L L Sbjct: 373 GERLEKDDITAGLTAVVTVRLAEPQFEGQTKEVLGTAPVRAIVARTVEKQLGAILTSTKR 432 Query: 363 ENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYL 422 ++ A +++ K++ RAR +AR+ +E++RRK AL+ + LP KLADC+ D SEL++ Sbjct: 433 DDKAQASLLLDKVVAEMRARVSARKQKEISRRKNALETSSLPAKLADCRSDDVERSELFI 492 Query: 423 VEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDE 482 VEGDSA G+AK R+ QA+LP++GKILNV+KA ML + E A +I LG G G Sbjct: 493 VEGDSALGTAKLARSSDFQALLPIRGKILNVQKASISDMLRNAECAAIIQVLGAGSG-RS 551 Query: 483 YNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK---- 538 ++ D RY +++MTDADVDG+HIRTLLLT FYR M +VE G V+ A PPL++++ Sbjct: 552 FDLDAARYGKVVLMTDADVDGAHIRTLLLTLFYRYMRPLVEAGRVFAAVPPLHRIEVYGA 611 Query: 539 --KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINR 596 KG + Y + + + G + GE + + ++ Sbjct: 612 RGKGNEYIYTYSEAELQATLKRLDRAGKRYKDDIQRYKGLGEMDADQL-----AETTMDP 666 Query: 597 MERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSE 636 R + + + E + + + +E Sbjct: 667 RHRTLRRVTAQHAEAAERVFELLMGSDVAPRKDFIISGAE 706 Score = 149 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 60/271 (22%), Positives = 99/271 (36%), Gaps = 20/271 (7%) Query: 550 EAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKEL 609 M + + NA + L S+ ++ A+ Sbjct: 447 AEMRARVSARKQKEISRRKNALETSSLPAKLADCRSDDVERSELFI---VEGDSALGTAK 503 Query: 610 IYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDV-----HTNAEQNLFEPIV 664 + + + +A L + A +S++ + + + + + + +V Sbjct: 504 LARSSDFQALLPIRGKILNVQKASISDMLRNAECAAIIQVLGAGSGRSFDLDAARYGKVV 563 Query: 665 RVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIE------RGERRQPVAS 718 + VD + Y R ++ + IE +G S Sbjct: 564 LMTDADVDGAHIRTLLLTLFYRYMRPLVEAGRVFAAVPPLHRIEVYGARGKGNEYIYTYS 623 Query: 719 FEQALDWLVKESRRGL----SIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAAD 774 + L + R G IQRYKGLGEM+ +QL ETTMDP R + RVT + A AA+ Sbjct: 624 EAELQATLKRLDRAGKRYKDDIQRYKGLGEMDADQLAETTMDPRHRTLRRVTAQHAEAAE 683 Query: 775 QLFTTLMGDAVEPRRAFIEENA--LKAANID 803 ++F LMG V PR+ FI A L + ID Sbjct: 684 RVFELLMGSDVAPRKDFIISGAESLDRSRID 714 >UniRef50_C4G1I8 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G1I8_ABIDE Length = 677 Score = 611 bits (1575), Expect = e-173, Method: Composition-based stats. Identities = 255/691 (36%), Positives = 384/691 (55%), Gaps = 63/691 (9%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 MS +YD S I +L+GL+AVRKRPGMYIG T GLHH+++E++DN IDE LAG C +I Sbjct: 1 MSENYDGSQIVILEGLEAVRKRPGMYIGSTGT-RGLHHLIWEILDNGIDEHLAGFCSQID 59 Query: 61 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 + + D ++++D GRG+P IHP + + V+ TVLHAGGKF +YKVSGGLHGVG Sbjct: 60 LILRNDGGITIRDYGRGVPVDIHPTKKIPTERVVYTVLHAGGKFSGGAYKVSGGLHGVGA 119 Query: 121 SVVNALSQKLELVIQREGKIHRQIYEHG--------VPQAPLAVTGETEKTGTMVRFWPS 172 SVVNALS K+ + I+R+G ++ YE+G + P T + GT V F+P Sbjct: 120 SVVNALSTKMIVEIRRDGNVYVDEYENGGHPVTALVKGELPAVKTCKKSDKGTSVTFYPD 179 Query: 173 LETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKN 232 F EF+ +I+ K+L+E +FLN G+ + +D+ G+E + + GIK++V+Y+N+ Sbjct: 180 DTIF-ETIEFKADIIKKKLKETAFLNKGLKLNFKDEITGEEKTYEEKDGIKSYVKYINRE 238 Query: 233 KTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRT 292 IH + Y E I VEVA Q+ +GF E I + N I DGGT + GF+ A+TR Sbjct: 239 TEVIHDEVVYVEGESGDIEVEVAFQYTNGFSEQINAYCNRINVVDGGTLVTGFKTALTRV 298 Query: 293 LNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQ 352 +N Y + GY K + G D R G++A++S+K PDP+F QTK KL +++ K+AVE+ Sbjct: 299 MNQYARELGYLKGKDDNFDGKDIRNGIVAIISIKHPDPQFEGQTKTKLGNTDAKTAVEEV 358 Query: 353 MNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQE 412 +++ + Y +N K ++ + AR A+ +AR + +L+ + KLA C Sbjct: 359 VSKEIVRYFDKNIEVLKSILDLAQKSYSARTASDKARNAVLK--SLNDFDVKSKLASCSS 416 Query: 413 RDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 472 ++ E+YLVEGDSAGG+ K RNRK QA+LPL+GKILNVEKA +K+L + E+ ++I Sbjct: 417 KNAEECEIYLVEGDSAGGTVKTARNRKTQAVLPLRGKILNVEKAALEKILVNNEIKSMIA 476 Query: 473 ALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQP 532 GCGIG DE++ KLRY III+TDADVDG+HI TLLLTFFYR MP++++ G +Y P Sbjct: 477 TFGCGIG-DEFDITKLRYDKIIILTDADVDGAHISTLLLTFFYRFMPDLIKEGKIYRGLP 535 Query: 533 PLYKV---KKGKQE--------------------------------------QYIKDDEA 551 PLYKV + G + +YI +D Sbjct: 536 PLYKVDYEESGAKVLEEKKLGEGQLDIFQLGVEDKPSEKQLKAKSGKKKKKSEYIFNDYE 595 Query: 552 MDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIY 611 +++++ + + + L + ++ R + + + + Sbjct: 596 LEKFKKNKNRKILEIQRYKGLGEMDASQL---------WETTLDPKTRSLARIDISDTVE 646 Query: 612 QPTLTEADLSDEQTVTRWVNALVSELNDKEQ 642 +T +S R ++ + Sbjct: 647 ADEVTSLLMSSVVPPRREFIMNEAKYAKVDI 677 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 77/223 (34%), Gaps = 42/223 (18%) Query: 623 EQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFI 682 LV+ + + ++ I+ + VD + Sbjct: 456 NVEKAALEKILVNNEIKSMIATFGCGIGDEFDITKLRYDKIIILTDADVDGAHISTLLLT 515 Query: 683 TGGEYRRICTLGEKLRGLLEEDAFIERGER------------------------------ 712 + K+ L ++ E Sbjct: 516 FFYRFMPDLIKEGKIYRGLPPLYKVDYEESGAKVLEEKKLGEGQLDIFQLGVEDKPSEKQ 575 Query: 713 -----------RQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRR 761 + + + + + ++R+ L IQRYKGLGEM+ QLWETT+DP++R Sbjct: 576 LKAKSGKKKKKSEYIFNDYELEKFKKNKNRKILEIQRYKGLGEMDASQLWETTLDPKTRS 635 Query: 762 MLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 + R+ + D + AD++ + LM V PRR FI A A +DI Sbjct: 636 LARIDISDTVEADEVTSLLMSSVVPPRREFIMNEAKYAK-VDI 677 >UniRef50_Q2S2H3 Type II DNA topoisomerase, B subunit n=3 Tax=Bacteria RepID=Q2S2H3_SALRD Length = 643 Score = 608 bits (1568), Expect = e-172, Method: Composition-based stats. Identities = 253/649 (38%), Positives = 387/649 (59%), Gaps = 13/649 (2%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 M +Y I VL+GL+ VRKRPGMYIG T GLHH+++EVVDNA+DEA G+ I Sbjct: 1 MPTTYTGEDIDVLEGLEPVRKRPGMYIGGTGR-PGLHHILWEVVDNAVDEATNGYASRIE 59 Query: 61 VTIHADN-SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 119 V +H D S+SV D+GRGIP HPE+GV ++I+T LH+GGKFD ++Y SGGLHGVG Sbjct: 60 VVLHEDGESISVSDNGRGIPVDDHPEKGVPTVQLILTTLHSGGKFDGSNYITSGGLHGVG 119 Query: 120 VSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTN 178 VSVVNALS++L ++R+G+ ++Q + G P L T E+ + TGT + F P + F Sbjct: 120 VSVVNALSEELVATVKRDGQEYQQRFRQGTPVTGLDTTKESARGTGTDIYFRPDPDIF-E 178 Query: 179 VTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNK--TPI 236 EF+ + + L ++LN + I RD+ + H+EGGI+ +++YL ++ +PI Sbjct: 179 SVEFDPSWIREHLDVKTYLNRDLKIIFRDETSNERYELHHEGGIQEYLDYLVEDLQVSPI 238 Query: 237 HPNIFYFSTEKDGIGV--EVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLN 294 H ++F + E+ALQW D +E ++ F N IP DGGTH G ++ + + Sbjct: 239 HDDVFMMEDDDLDGDGRLEIALQWTDAPKEQLHTFVNGIPTEDGGTHEQGLKSGIRAVIR 298 Query: 295 AYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMN 354 ++MD ++ GDD REGL+ +V++ DP+F QTKDKL + V+S V + Sbjct: 299 SFMDTHDLVP-HRLEIKGDDTREGLVGIVNLFHVDPQFQGQTKDKLNNPSVRSQVSGALR 357 Query: 355 ELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDL-AGLPGKLADCQER 413 L +YL ++ + + + +++ AA+AR A R A + + LPGKLADC Sbjct: 358 TELEQYLNDHSSTGEAIASRVVQAAKARRARRSASGGSSGRSGSKSRLQLPGKLADCSSS 417 Query: 414 DPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITA 473 P+ EL++VEGDSAGGSAKQ R+R+ QA+LPL+GK+LN E+A D++ +++E++ ++ A Sbjct: 418 TPSECELFIVEGDSAGGSAKQARDRETQAVLPLRGKVLNAEQATLDRVQNNKELSNIVQA 477 Query: 474 LGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPP 533 LGCGIG D + LRY +I++ DAD DG HI TLLLTFFYR M ++E G V+IAQPP Sbjct: 478 LGCGIG-DALDLSDLRYRKVILLMDADSDGHHIATLLLTFFYRYMRPLIEGGFVHIAQPP 536 Query: 534 LYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKM 593 LY+++ GK+ + D+ +Q I DG + + GE + ++E + + Sbjct: 537 LYRIEAGKETHWALDEPDKEQILDEIRSDGRNPNVDIQRFKGLGEMMPDTLNETTLSPEG 596 Query: 594 INRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQ 642 +E P + ++ + T+TE D +++ +E ++ + Sbjct: 597 RRLLEVSIPDT--ERMVTEQTITELMGRDSSARFKFIMQHAAEADELDV 643 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 72/178 (40%), Gaps = 10/178 (5%) Query: 635 SELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLG 694 ++ + + ++ + D + + YR + L Sbjct: 468 NKELSNIVQALGCGIGDALDLSDLRYRKVILLMDADSDGHHI--ATLLLTFFYRYMRPLI 525 Query: 695 EKLRGLLEEDAFIERGERRQPVASFEQ-----ALDWLVKESR-RGLSIQRYKGLGEMNPE 748 E + + ++ + ++ LD + + R + IQR+KGLGEM P+ Sbjct: 526 EGGFVHIAQPPLYRIEAGKETHWALDEPDKEQILDEIRSDGRNPNVDIQRFKGLGEMMPD 585 Query: 749 QLWETTMDPESRRMLRVTVKDAIA--ADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 L ETT+ PE RR+L V++ D +Q T LMG R FI ++A +A +D+ Sbjct: 586 TLNETTLSPEGRRLLEVSIPDTERMVTEQTITELMGRDSSARFKFIMQHAAEADELDV 643 >UniRef50_D2NTW6 Type IIA topoisomerase, B subunit n=10 Tax=Actinomycetales RepID=D2NTW6_9MICC Length = 724 Score = 604 bits (1556), Expect = e-171, Method: Composition-based stats. Identities = 240/688 (34%), Positives = 357/688 (51%), Gaps = 68/688 (9%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 S++Y + + VL+GL+AVRKRPGMYIG TD GL H ++E++DN++DEALAG + I V Sbjct: 27 SSNYTARHLSVLEGLEAVRKRPGMYIGSTD-SRGLMHCLWEIIDNSVDEALAGFGQSIQV 85 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 ++ D SV V+DDGRGIPT I P G+S EV+ T LHAGGKF SY SGGLHGVG S Sbjct: 86 ILYRDGSVEVRDDGRGIPTDIEPRTGLSGVEVVFTKLHAGGKFGGGSYNASGGLHGVGAS 145 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVP---------------------QAPLAVTGET 160 VVNALS +L++ + R K ++ + HG+P L + G Sbjct: 146 VVNALSSRLDVQVDRGSKTYQMSFRHGIPGFFESGRTPKPEDPFTPATEGTDALQIVGRA 205 Query: 161 EK--TGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKR--------- 209 ++ TGT VR+W + FT +F YE LA R+R+ +FL G+ I +RD+R Sbjct: 206 KRGVTGTRVRYWADPQIFTPDAKFSYEDLAARVRQTAFLIPGLRICIRDERRLPGTPGEL 265 Query: 210 DGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTE-------------------KDGI 250 + E+ F Y+GGI FVE+L ++ F S + Sbjct: 266 EPHEEVFQYDGGISEFVEFLAHDERITDTWRFSGSGSFTETVPVLGEDGRSQLTDVERDC 325 Query: 251 GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAY-MDKEGYSKKAKVS 309 V+VAL+W G++ + F N I GGTH GF + R + + D K Sbjct: 326 EVDVALRWGIGYETTVRSFVNIIATPKGGTHTTGFEQGLLRVMRKHLADNARKYKVGNDK 385 Query: 310 ATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLEN----P 365 DD GL AV++V++ +P+F QTK+ L + V+ V + + + L L Sbjct: 386 IEKDDVLAGLTAVLTVRLAEPQFEGQTKEILGTPAVRQIVSKVVGDALKARLESTARAEK 445 Query: 366 TDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 425 A + K++ + R +AR +E RRK AL+ + +P KL DC+ + SEL++VEG Sbjct: 446 AQAAALCEKVVSEMKTRVSARIHKETQRRKTALESSSMPTKLVDCRSTNVEHSELFIVEG 505 Query: 426 DSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNP 485 DSA G+A+ R+ QA+LP++GKILN ++A +L++ E A LI +G G G ++ Sbjct: 506 DSALGTARLARSSSYQALLPIRGKILNTQRASVTDVLANAECAALIQVIGAGSG-RTFDL 564 Query: 486 DKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK-----KG 540 D RY +I+MTDADVDG+HIRTLLLT FYR M ++E G VY A PPL++V+ K Sbjct: 565 DSARYGKVIMMTDADVDGAHIRTLLLTLFYRYMRPLIEAGRVYAAVPPLHRVEVVRRGKP 624 Query: 541 KQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERR 600 + Y ++ + + S+ G + GE + + ++ R Sbjct: 625 NEMVYTYSEKQLHELLDSLQEQGVSYKEPIQRYKGLGEMDADQL-----AETTMDPRHRM 679 Query: 601 YPKAMLKELIYQPTLTEADLSDEQTVTR 628 + +++ + E + Sbjct: 680 LRRIRIEDAEAAERAFSLLMGSEVAPRK 707 Score = 148 bits (373), Expect = 8e-34, Method: Composition-based stats. Identities = 47/186 (25%), Positives = 79/186 (42%), Gaps = 11/186 (5%) Query: 630 VNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRR 689 + L + + + + ++ + VD + Y R Sbjct: 539 TDVLANAECAALIQVIGAGSGRTFDLDSARYGKVIMMTDADVDGAHIRTLLLTLFYRYMR 598 Query: 690 ICTLGEKLRGLLEEDAFI---ERGERRQPVASFEQ-----ALDWLVKESRRGLS-IQRYK 740 ++ + + RG+ + V ++ + LD L ++ IQRYK Sbjct: 599 PLIEAGRVYAAVPPLHRVEVVRRGKPNEMVYTYSEKQLHELLDSLQEQGVSYKEPIQRYK 658 Query: 741 GLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENAL--K 798 GLGEM+ +QL ETTMDP R + R+ ++DA AA++ F+ LMG V PR+ FI A Sbjct: 659 GLGEMDADQLAETTMDPRHRMLRRIRIEDAEAAERAFSLLMGSEVAPRKEFIIAGAHQLD 718 Query: 799 AANIDI 804 +ID+ Sbjct: 719 TESIDM 724 >UniRef50_A0Q197 DNA topoisomerase IV subunit B n=34 Tax=Clostridium RepID=A0Q197_CLONN Length = 652 Score = 602 bits (1551), Expect = e-170, Method: Composition-based stats. Identities = 244/656 (37%), Positives = 376/656 (57%), Gaps = 34/656 (5%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 NSYD + + L+ L+ VR RPGMYIG T GLHH ++E++DN+IDE G+ ++++ Sbjct: 9 KNSYDVTDLTSLEKLEPVRVRPGMYIGSTGT-KGLHHCIWEILDNSIDEIANGYGNKVVL 67 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 ++ D SV++ D+GRGIPTGIHP + S E++ T LH GGKF++ +YK SGGLHGVG + Sbjct: 68 ILNKDKSVTIMDNGRGIPTGIHPVKKKSGVEMVFTELHTGGKFNNKNYKTSGGLHGVGAA 127 Query: 122 VVNALSQKLELVIQREGKIHRQIYEH-----------GVPQAPLAVTGETEKTGTMVRFW 170 VVNALS+ LE+ + ++G IH+Q +E+ G P PL + G+TE+TGT + F Sbjct: 128 VVNALSEWLEVEVYQKGHIHKQRFEYAEDKSLNKKMPGTPIFPLKIVGDTERTGTKITFK 187 Query: 171 PSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK--EDHFHYEGGIKAFVEY 228 P E F+ TEF++E++ +RL+EL+F N G+++ ++D+R + E +H E G+ F++Y Sbjct: 188 PDKEVFS-TTEFKFEVIDERLQELAFQNKGITLVIKDERKEEVIEKEYHSERGLLDFIDY 246 Query: 229 LNKNKTPIHPNIFYFSTEKDGIGV----EVALQWNDGFQENIYCFTNNIPQRDGGTHLAG 284 LN++K PIH + + EK+ + EV +Q+ D ENI + NNIP + GTH G Sbjct: 247 LNESKIPIHKDPLLYEGEKEVNSIKVYCEVCMQFTDSSTENIASYVNNIPTTESGTHETG 306 Query: 285 FRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSE 344 F+ MTR + K K+ GDD REG+ A++ VK+ +P F QTK KL ++E Sbjct: 307 FKTGMTRAFKEWAKKLNIVKEKDKGFEGDDLREGMTAILRVKISNPIFEGQTKTKLGNNE 366 Query: 345 VKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLP 404 + + + + E++ +N A ++ + AA RE ++ + ++K A L Sbjct: 367 AYTVMNELAYIKIGEWIEDNKEIATQIINNAVSAAARREKIKKINDAEKKKVGKGTAPLA 426 Query: 405 GKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 464 GK++ C + P E +VEGDSAGGSAKQ R+R+ Q I+P KGKI+N EK R + +L+S Sbjct: 427 GKVSICTLKRPEFCEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQRLENVLAS 486 Query: 465 QEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVER 524 +E+ A+G G+ + N D L+Y III++DADVDG HIRTL +T+ YR M ++ Sbjct: 487 EELKLFNAAIGTGVLENY-NEDDLKYDKIIILSDADVDGYHIRTLWITYIYRYMRSLITN 545 Query: 525 GHVYIAQPPLYKVKKGKQE----QYIKDDEAMDQYQISIALDGATLHTNASAPALAGEAL 580 GH+YIA PPLYKV K ++ +Y DE + + I GA + + + L Sbjct: 546 GHLYIALPPLYKVYKNSKKGEISRYAYSDEELASAKKEIG-KGALIQRYKGLGEMNPDQL 604 Query: 581 EKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSE 636 +N R + +++ + + D R +E Sbjct: 605 ---------WDTTLNPETRTLQQITIEDAAKAEKMISLLMGDVVEPRRNYMYKYAE 651 Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 3/177 (1%) Query: 623 EQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFI 682 R N L SE + N + ++ I+ + VD + Sbjct: 474 NTEKQRLENVLASEELKLFNAAIGTGVLENYNEDDLKYDKIIILSDADVDGYHIRTLWIT 533 Query: 683 TGGEYRRICTLGEKLRGLLEEDAFIERGERRQP---VASFEQALDWLVKESRRGLSIQRY 739 Y R L L + + ++ A ++ L KE +G IQRY Sbjct: 534 YIYRYMRSLITNGHLYIALPPLYKVYKNSKKGEISRYAYSDEELASAKKEIGKGALIQRY 593 Query: 740 KGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENA 796 KGLGEMNP+QLW+TT++PE+R + ++T++DA A+++ + LMGD VEPRR ++ + A Sbjct: 594 KGLGEMNPDQLWDTTLNPETRTLQQITIEDAAKAEKMISLLMGDVVEPRRNYMYKYA 650 >UniRef50_C6PY14 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PY14_9CLOT Length = 653 Score = 598 bits (1542), Expect = e-169, Method: Composition-based stats. Identities = 248/658 (37%), Positives = 380/658 (57%), Gaps = 34/658 (5%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 YD +++ L+ L+ VR RPGMYIG T GLHH ++E++DN+IDE G + IV Sbjct: 9 QVYDVTALTSLEKLEPVRVRPGMYIGSTG-SKGLHHCIWEILDNSIDEISNGFGDKAIVI 67 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 ++ D SV++ D+GRGIPTGIHP + S E++ T LH GGKF+++ YK SGGLHGVG +V Sbjct: 68 LNKDKSVTIIDNGRGIPTGIHPVKKKSGVEMVFTELHTGGKFNNDVYKTSGGLHGVGAAV 127 Query: 123 VNALSQKLELVIQREGKIHRQIYEH-----------GVPQAPLAVTGETEKTGTMVRFWP 171 VNALS+ + + I++ G I+ Q +E+ G P L + G T++TGT V F P Sbjct: 128 VNALSKWVVVEIKQNGHIYTQRFEYAYDKSLKRDMPGTPVTALKIAGNTKETGTKVTFLP 187 Query: 172 SLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK--EDHFHYEGGIKAFVEYL 229 + F+N TEF+++++ +RL+EL+F N G+++++ DKR+ + E +H E G+ F+EYL Sbjct: 188 DKDVFSN-TEFKFDVIDERLQELAFQNKGITLKIIDKREDEVVEKEYHSERGLLDFIEYL 246 Query: 230 NKNKTPIHPNIFYFSTEKDGIGV----EVALQWNDGFQENIYCFTNNIPQRDGGTHLAGF 285 N++KT +H F E++ G+ EV +Q+ D E I + NNIP + GTH +GF Sbjct: 247 NESKTALHTPPILFEGEREVNGISMYSEVCVQFTDSTTEYIASYVNNIPTTESGTHESGF 306 Query: 286 RAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEV 345 +A MTR + K K+ GDD REG+ A+V +K+ +P F QTK KL ++E Sbjct: 307 KAGMTRAFKEWTKKLNLLKEKDKEFEGDDLREGMTAIVRIKITNPIFEGQTKTKLGNTEA 366 Query: 346 KSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPG 405 + + +E++ +N A ++ IDAA RE ++ E ++K A L G Sbjct: 367 YTMMNDLAYTKFSEWIEDNKDTASSIINNAIDAAARREKIKKINEAEKKKIGKGTAPLAG 426 Query: 406 KLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQ 465 K+A C +DP+ SE +VEGDSAGGSAKQ R+R+ Q I+P KGKI+N EK + + +L S+ Sbjct: 427 KIAVCTLKDPSFSEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQKLENVLGSE 486 Query: 466 EVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERG 525 E+ TA+G G+ ++ D L+Y+ IIIM+DADVDG HIRTL +T+ YR M +I+ G Sbjct: 487 ELKIFNTAIGTGVLQNYKEQD-LKYNKIIIMSDADVDGYHIRTLWMTYIYRYMRQIISNG 545 Query: 526 HVYIAQPPLYKVKKGKQ----EQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALE 581 H+YIA PPLYKV K + +Y DE +++ + + GA + + + L Sbjct: 546 HLYIALPPLYKVYKQNKNKEIVRYAYSDEELEKEKKQVG-KGALIQRYKGLGEMNPDQL- 603 Query: 582 KLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELND 639 + +N R + +++ + + D + + ND Sbjct: 604 --------WETTLNPETRTLQQITIEDAAKAEKMVSLLMGDVVAPRKNYMYKYAVFND 653 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 48/177 (27%), Positives = 81/177 (45%), Gaps = 3/177 (1%) Query: 623 EQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFI 682 + N L SE + + + I+ + VD + Sbjct: 473 NTEKQKLENVLGSEELKIFNTAIGTGVLQNYKEQDLKYNKIIIMSDADVDGYHIRTLWMT 532 Query: 683 TGGEYRRICTLGEKLRGLLEEDAFIERGERRQP---VASFEQALDWLVKESRRGLSIQRY 739 Y R L L + + + + A ++ L+ K+ +G IQRY Sbjct: 533 YIYRYMRQIISNGHLYIALPPLYKVYKQNKNKEIVRYAYSDEELEKEKKQVGKGALIQRY 592 Query: 740 KGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENA 796 KGLGEMNP+QLWETT++PE+R + ++T++DA A+++ + LMGD V PR+ ++ + A Sbjct: 593 KGLGEMNPDQLWETTLNPETRTLQQITIEDAAKAEKMVSLLMGDVVAPRKNYMYKYA 649 >UniRef50_A8LVU4 DNA gyrase subunit B domain protein n=37 Tax=Actinomycetales RepID=A8LVU4_SALAI Length = 730 Score = 598 bits (1541), Expect = e-169, Method: Composition-based stats. Identities = 251/684 (36%), Positives = 369/684 (53%), Gaps = 50/684 (7%) Query: 5 YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIH 64 Y++ + L+GLDAVRKRPGMYIG TD G+ H+V E++DN+ DE +AGH I VT+H Sbjct: 54 YEADDLTHLEGLDAVRKRPGMYIGSTD-SRGVGHLVNEILDNSTDEGVAGHATSIEVTLH 112 Query: 65 ADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN 124 AD SV V DDGRGIPT +H + G+S E+++T LHAGGKF + YK SGGLHGVG S VN Sbjct: 113 ADGSVQVDDDGRGIPTDVHAKSGISGVELVLTRLHAGGKFGGSGYKTSGGLHGVGASAVN 172 Query: 125 ALSQKLELVIQREGKIHRQIYEHGVPQA--------------PLAVTGETE---KTGTMV 167 ALS++ ++ ++R GKIH + HGVP L V G + +TGT + Sbjct: 173 ALSRRFDVTVRRGGKIHTMSFRHGVPGTFDGDGPEAPFRAGPGLQVIGAVKRRQRTGTSI 232 Query: 168 RFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKR--DGKEDHFHYEGGIKAF 225 R+W F + E + +LR +FL GVS LRD + E+ FHY G+ Sbjct: 233 RYWYDPRYFEVGATLDAEAVRMKLRNTAFLVPGVSYLLRDHTGAEPVEERFHYPNGLTDM 292 Query: 226 VEYLNKNKTPIHPNIFYFSTEKD------------------GIGVEVALQWNDGFQENIY 267 V++L I S E VE+A +W G++ + Sbjct: 293 VDFLAPAGDRPVSGILVVSGEGTYRENAADANGVMQANVPRRAEVELAFRWGTGYERTVE 352 Query: 268 CFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDK-EGYSKKAKVSATGDDAREGLIAVVSVK 326 CFTN I GGTH GF A+TRTL + G K + T DD EG+ AVV V+ Sbjct: 353 CFTNTIRNAHGGTHRKGFERALTRTLADAVRNARGLLKAKEDPPTLDDILEGMTAVVHVR 412 Query: 327 VPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLE--NPTDAKIVVGKIIDAARAREA 384 +P+P+F+SQTKD+L ++ + +++ + + L +L E +A+ V+ KI DAAR R Sbjct: 413 IPEPQFTSQTKDELSTAGITKVLQRLVEQHLKVWLEERRTKAEARTVLQKIADAARVRLT 472 Query: 385 ARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAIL 444 ++ ++ RRK AL+ A +P KL DC+ A SE+++VEGDSA G+A+ R+ + QA+L Sbjct: 473 QKQQKDAARRKTALEGASMPAKLVDCRSTGVARSEMFIVEGDSALGTARLARSSEYQALL 532 Query: 445 PLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGS 504 P++GKILNV+KA ++L + E A ++ LG G G ++ +RY ++IM DADVDG+ Sbjct: 533 PIRGKILNVQKANLQQVLDNAECAAIVQVLGAGSG-RTFDLSAVRYGRVLIMADADVDGA 591 Query: 505 HIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK---KGKQEQYIKDDEAMDQYQISIAL 561 HIRTLL+T F R M ++E G +Y A PPL+K+ + Q Y E M+ + Sbjct: 592 HIRTLLITLFARYMRPLIEAGRLYAAMPPLHKITTRGRNPQTVYTYTQEEMEATVRRLEK 651 Query: 562 DGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLS 621 G + T GE + + +N R + L++ + E + Sbjct: 652 AGKQIVTPIPRFKGLGEMNADEL-----WETTMNPAGRAVRRITLEDAEAAEQVLELLMG 706 Query: 622 DEQTVTRWVNALVSELNDKEQHGS 645 ++ R ++ D+E + Sbjct: 707 EKVEPRRNWLIASADRVDREAIDA 730 Score = 146 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 73/186 (39%), Gaps = 7/186 (3%) Query: 623 EQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFI 682 L + + + ++ + VD + Sbjct: 540 NVQKANLQQVLDNAECAAIVQVLGAGSGRTFDLSAVRYGRVLIMADADVDGAHIRTLLIT 599 Query: 683 TGGEYRRICTLGEKLRGLLEEDAFIE---RGERRQPVASFEQALDWLVKESRRG----LS 735 Y R +L + I R + + E+ + + + G Sbjct: 600 LFARYMRPLIEAGRLYAAMPPLHKITTRGRNPQTVYTYTQEEMEATVRRLEKAGKQIVTP 659 Query: 736 IQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEEN 795 I R+KGLGEMN ++LWETTM+P R + R+T++DA AA+Q+ LMG+ VEPRR ++ + Sbjct: 660 IPRFKGLGEMNADELWETTMNPAGRAVRRITLEDAEAAEQVLELLMGEKVEPRRNWLIAS 719 Query: 796 ALKAAN 801 A + Sbjct: 720 ADRVDR 725 >UniRef50_P50028 DNA gyrase subunit B n=331 Tax=cellular organisms RepID=GYRB_MYCCT Length = 643 Score = 597 bits (1539), Expect = e-169, Method: Composition-based stats. Identities = 263/634 (41%), Positives = 392/634 (61%), Gaps = 22/634 (3%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 YD S+I+VL+GL+AVRKRPGMYIG TD+ GLHH+V+E+VDNAIDEALAG+C +I V Sbjct: 5 KKYDESAIQVLEGLEAVRKRPGMYIGSTDN-KGLHHLVWEIVDNAIDEALAGYCTQIDVI 63 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 + DNS++V D+GRGIPTG+H + G EVI +VLHAGGKFD +YK SGGLHGVG SV Sbjct: 64 LEKDNSITVIDNGRGIPTGMH-KTGKPTPEVIFSVLHAGGKFDSTAYKSSGGLHGVGSSV 122 Query: 123 VNALSQKLELVIQREGKIHRQIYEHG-VPQAPLAVTGETEKTGTMVRFWPSLETFTNVTE 181 NALS++ + +I R+ KIH +++G + PL T KTGT + F P F+N + Sbjct: 123 TNALSKRFKAIIYRDKKIHEIEFKNGGKLEKPLTFINTTYKTGTTINFLPDDTIFSN-AK 181 Query: 182 FEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIF 241 F + ++++RL+E + LNSG+ I L D + + ++ G+ FV+ L +KTP+ +I Sbjct: 182 FNFSLISERLKESALLNSGLKITLSDLISNRYVEYQFQDGLVEFVKELVDDKTPV-TDII 240 Query: 242 YFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEG 301 + E I VE+ALQ+ + E I F NN+ DGGTHL GF++ + R +N Y + Sbjct: 241 TINNESKNIIVEIALQYTEDDNEIILGFANNVKTIDGGTHLVGFKSGLIRAINDYAKDQK 300 Query: 302 YSKKAKVSATGDDAREGLIAVVSVKVPD--PKFSSQTKDKLVSSEVKSAVEQQMNELLAE 359 K K +D REGL+A+V+VK+P+ ++ QTK KL +S+ K+ VEQ + E ++ Sbjct: 301 ILKD-KTKLDSNDLREGLVAIVTVKIPENLIEYEGQTKSKLGTSDAKTVVEQIVYEFMSY 359 Query: 360 YLLENPTDAKIVVGKIIDAARAREAARRAREMTRR-KGALDLAGLP-GKLADCQERDPAL 417 +L+EN A V+ ++A +AR AA++AR+ + KG ++ L GKL Q + L Sbjct: 360 WLIENKVLANKVIENALNAQKARIAAKQARQAIKSVKGKKNVNKLMLGKLTPAQGKKREL 419 Query: 418 SELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCG 477 +ELYLVEGDSAGGSAK GR+R QAILPL+GK++N EKA+ +L ++E+ ++I A+G G Sbjct: 420 NELYLVEGDSAGGSAKSGRDRNFQAILPLRGKVINSEKAKLVDLLKNEEIQSIINAIGAG 479 Query: 478 IGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKV 537 +G+D ++ + Y IIIMTDAD DG+HI+TLLLTFFYR M +++ VYIA PPLYK+ Sbjct: 480 VGKD-FDISDINYGKIIIMTDADTDGAHIQTLLLTFFYRHMKDLIIHKKVYIALPPLYKI 538 Query: 538 K-KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINR 596 K Y+ D+E ++++ + + + L Q ++ Sbjct: 539 TFNDKSFIYLWDEEELNKFN-KTNTKKYEIQRYKGLGEMNADQL---------WQTTMDP 588 Query: 597 MERRYPKAMLKELIYQPTLTEADLSDEQTVTRWV 630 R+ + + + + + + + D+ + Sbjct: 589 KNRKIIQVTISDGLLAERMFKTLMGDDVEKRKLW 622 Score = 163 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 48/181 (26%), Positives = 84/181 (46%) Query: 623 EQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFI 682 + V+ L +E + + + I+ + D + Sbjct: 454 NSEKAKLVDLLKNEEIQSIINAIGAGVGKDFDISDINYGKIIIMTDADTDGAHIQTLLLT 513 Query: 683 TGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGL 742 + + + +K+ L I ++ E+ L+ K + + IQRYKGL Sbjct: 514 FFYRHMKDLIIHKKVYIALPPLYKITFNDKSFIYLWDEEELNKFNKTNTKKYEIQRYKGL 573 Query: 743 GEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANI 802 GEMN +QLW+TTMDP++R++++VT+ D + A+++F TLMGD VE R+ +I+EN Sbjct: 574 GEMNADQLWQTTMDPKNRKIIQVTISDGLLAERMFKTLMGDDVEKRKLWIQENVKFTLED 633 Query: 803 D 803 D Sbjct: 634 D 634 >UniRef50_Q83G36 DNA gyrase subunit B-like protein n=2 Tax=Tropheryma whipplei RepID=Q83G36_TROWT Length = 662 Score = 593 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 235/658 (35%), Positives = 347/658 (52%), Gaps = 35/658 (5%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 Y++ I +L+GL AVRKRPGMYIG TD+ GL H ++E++DN++DE LAG + +T Sbjct: 5 TDYNADDIALLEGLAAVRKRPGMYIGSTDNH-GLAHCLWEIIDNSVDEVLAGFGNVVNIT 63 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 +H DNS SVQD GRGIP I + G++ E++ T LHAGGKF +Y SGGLHGVG SV Sbjct: 64 LHGDNSFSVQDFGRGIPVDIESKTGLTGVELVFTKLHAGGKFGTGAYFTSGGLHGVGASV 123 Query: 123 VNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGE--TEKTGTMVRFWPSLETFTNVT 180 VNALS+KL + + R+G + + L + + TGT VRFWP F Sbjct: 124 VNALSEKLSVEVDRDGMTWVMEF-RNQVTSGLRSKCKIASNVTGTRVRFWPDPLIFG-SA 181 Query: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNK------- 233 E E L +R + +FL G+ + + D+ GK + +EGG K FVE+L+ + Sbjct: 182 EICIESLHQRAMQTAFLVPGLRVNIEDRVLGKSSSYLFEGGCKQFVEHLSAGELITDVLC 241 Query: 234 ---TPIHPNIFYFSTEKDG---------IGVEVALQWNDGFQENIYCFTNNIPQRDGGTH 281 E V++AL W + F+ +I F N I GGTH Sbjct: 242 IRGKGSFSEAVPVLKETGNLVISSVERVCDVDIALAWRNDFETHINSFVNVIETPKGGTH 301 Query: 282 LAGFRAAMTRTL-NAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKL 340 +GF A+ +T+ NA + Y K +D GL AVVSVK+P+P+F QTK+ L Sbjct: 302 YSGFEQALLKTIRNAVSSQSRYLKSGNNRPEREDVFSGLTAVVSVKLPEPQFEGQTKEVL 361 Query: 341 VSSEVKSAVEQQMNELLAEYLL--ENPTDAKIVVGKIIDAARAREAARRAREMTRRKGAL 398 + VK V + + L + + T + V+ K++ R AAR +RE RRK AL Sbjct: 362 GTPAVKGIVANIVADNLQKLFEDPKYKTQIRRVLEKVVAQMHFRLAARASRETQRRKNAL 421 Query: 399 DLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARF 458 + + LP KL DC+ D SEL++VEGDSA G+A++ RN + QA+LP++GKILNV+KA Sbjct: 422 ETSSLPAKLVDCRSNDVNESELFIVEGDSALGTARRARNSEYQALLPIRGKILNVQKASV 481 Query: 459 DKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQM 518 L++ E A++I +G G G + ++ + RY +IIM+DADVDG+HIR LLLT F+R M Sbjct: 482 ADALANAECASIIQVIGAGSGSN-FDIAQARYGKVIIMSDADVDGAHIRILLLTLFFRYM 540 Query: 519 PEIVERGHVYIAQPPLYK--VKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALA 576 ++ G V+ A PPL++ VK ++ Y + D ++ + +G Sbjct: 541 QPMISSGRVFSALPPLHQVVVKNSNEKIYTRSDRELEMVLSRLKQEGLEHREPIQRYKGL 600 Query: 577 GEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALV 634 GE ++E + + R + + + ++ R A Sbjct: 601 GEMDADQLAETTMDRSKRTLLRIRMS-----DAQQASDIFALLMGNDVAPRREFIANS 653 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 46/178 (25%), Positives = 72/178 (40%), Gaps = 6/178 (3%) Query: 632 ALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRIC 691 AL + + + Q + ++ + VD + Y + Sbjct: 484 ALANAECASIIQVIGAGSGSNFDIAQARYGKVIIMSDADVDGAHIRILLLTLFFRYMQPM 543 Query: 692 TLGEKLRGLLEED--AFIERGERRQPVASFEQALDWLVKESRRGLS----IQRYKGLGEM 745 ++ L ++ + S + L + + GL IQRYKGLGEM Sbjct: 544 ISSGRVFSALPPLHQVVVKNSNEKIYTRSDRELEMVLSRLKQEGLEHREPIQRYKGLGEM 603 Query: 746 NPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANID 803 + +QL ETTMD R +LR+ + DA A +F LMG+ V PRR FI + + ID Sbjct: 604 DADQLAETTMDRSKRTLLRIRMSDAQQASDIFALLMGNDVAPRREFIANSVVSTDRID 661 >UniRef50_A1SCM1 DNA gyrase subunit B n=28 Tax=Actinomycetales RepID=A1SCM1_NOCSJ Length = 711 Score = 589 bits (1517), Expect = e-166, Method: Composition-based stats. Identities = 281/672 (41%), Positives = 407/672 (60%), Gaps = 53/672 (7%) Query: 4 SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTI 63 YD+S+I+VL+GL+AVRKRPGMYIG T + GLHH+++E+VDNA+DEALAG+C I++T+ Sbjct: 31 DYDASAIQVLEGLEAVRKRPGMYIGSTGE-RGLHHLIWEIVDNAVDEALAGYCDRIVLTL 89 Query: 64 HADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVV 123 AD + V+D+GRGIPTG P + + A + +TVLHAGGKF YKVSGGLHGVGVSVV Sbjct: 90 LADGGIRVEDNGRGIPTGTAPGQELPALTLALTVLHAGGKFGGGGYKVSGGLHGVGVSVV 149 Query: 124 NALSQKLELVIQREGKIHRQIYEHGVPQAPLAVT---GETEKTGTMVRFWPSLETFTNVT 180 NALS +L ++ G + RQ + GVP L E TGT + +W S + F T Sbjct: 150 NALSTRLVAEVKNRGHLWRQSFSAGVPDGELEQVRPVEPDEGTGTTITYWASPDIF-ETT 208 Query: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGK---------------------------- 212 E + R+RE +FLN G+ I +RD+R Sbjct: 209 THSLETITSRIREYAFLNKGLEIVVRDERPAAAEIVDAVEDDTVDPDHRGGIDDAGHDAI 268 Query: 213 --------EDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTE-----KDGIGVEVALQWN 259 E F Y+ G+ +VE+LN+ KT +P + F E ++ + +EVA+QWN Sbjct: 269 KRGEGGALEQIFKYDRGLIDYVEHLNRRKTAANPTVIAFEAETPESVENHMSLEVAMQWN 328 Query: 260 DGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGL 319 F E+++ F N I +GGTH GFRAA+T +N + + G KK + +GDD REGL Sbjct: 329 TSFSESVHTFANTINTHEGGTHEEGFRAALTSLVNNWGFEWGLMKKPEDRVSGDDIREGL 388 Query: 320 IAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAA 379 A++S+K+ +P+F QTK KL ++E K V++ +N+ L +L +NP + + +V K AA Sbjct: 389 TAIISIKLGEPQFEGQTKTKLGNTEAKGFVQRLVNDQLGAWLEQNPAEGRDIVRKAQAAA 448 Query: 380 RAREAARRAREMTR-RKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNR 438 AR AAR+AR++ R RKG L GLPGKL+DCQ +PA E+++VEGDSAGGSA+QGR+ Sbjct: 449 SARIAARKARDLARSRKGLLGGGGLPGKLSDCQSTNPAECEVFIVEGDSAGGSARQGRDP 508 Query: 439 KNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTD 498 + QAILP++GKILNVEKAR DK+LS+QEV ++I+ALG GI +DE++ +KLRYH +++M D Sbjct: 509 RIQAILPIRGKILNVEKARIDKVLSNQEVQSIISALGTGI-QDEFDIEKLRYHKVVLMAD 567 Query: 499 ADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGK--QEQYIKDDEAMDQYQ 556 ADVDG HI TLLLT +R M ++E G+VY+AQPPLY+++ K + +++ D D Sbjct: 568 ADVDGHHINTLLLTLLFRFMKPLIEGGYVYMAQPPLYRLRWNKPHEHEFVYSDAERDALL 627 Query: 557 ISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLT 616 + G L G ++ + ++ +R + L + + + Sbjct: 628 RAGQEAGKKLPKENPVQRYKGLG---EMNAKELWETTMDPEQRLMLQVTLDDAAHADEIF 684 Query: 617 EADLSDEQTVTR 628 + ++ R Sbjct: 685 SILMGEDVEQRR 696 Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 52/192 (27%), Positives = 80/192 (41%), Gaps = 12/192 (6%) Query: 623 EQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFI 682 R L ++ + E+ + +V + VD + Sbjct: 522 NVEKARIDKVLSNQEVQSIISALGTGIQDEFDIEKLRYHKVVLMADADVDGHHINTLLLT 581 Query: 683 TGGEYRRICTLGEKLRGLLEEDAFIE---RGERRQPVASFEQALDWLVKESRRGLS---- 735 + + L E + + + D L++ + Sbjct: 582 LLFRFMK--PLIEGGYVYMAQPPLYRLRWNKPHEHEFVYSDAERDALLRAGQEAGKKLPK 639 Query: 736 ---IQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFI 792 +QRYKGLGEMN ++LWETTMDPE R ML+VT+ DA AD++F+ LMG+ VE RR+FI Sbjct: 640 ENPVQRYKGLGEMNAKELWETTMDPEQRLMLQVTLDDAAHADEIFSILMGEDVEQRRSFI 699 Query: 793 EENALKAANIDI 804 + NA +DI Sbjct: 700 QRNAKDVRFLDI 711 >UniRef50_Q59526 DNA topoisomerase 4 subunit B n=9 Tax=Bacteria RepID=PARE_MYCGA Length = 633 Score = 588 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 252/635 (39%), Positives = 371/635 (58%), Gaps = 18/635 (2%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 M ++Y+ IKVLKGL+ VRKRPGMYIG TD GLHH+V+E+ DNA+DEAL G +I Sbjct: 1 MVSNYNEKHIKVLKGLEPVRKRPGMYIGSTDT-RGLHHLVWELFDNAVDEALNGSANKIE 59 Query: 61 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 V D S+ V D+GRGIP G + +S + + TVLHAGGKFDD +YKVSGGLHGVG Sbjct: 60 VVHKKDGSIIVTDNGRGIPVGKNLATNLSTVDTVYTVLHAGGKFDDQAYKVSGGLHGVGA 119 Query: 121 SVVNALSQKLELVIQREGKIHRQIYEH-GVPQAPLAVTGETEKTGTMVRFWPSLETFTNV 179 SVVNALS+KL + + R+G ++ IY+ G PL G + K GT+V+FWP F N+ Sbjct: 120 SVVNALSRKLIVTVHRDGGMYESIYQDGGKIIQPLKKVGNSTKHGTIVQFWPDPTIFKNI 179 Query: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK-EDHFHYEGGIKAFVEYLNKNKTPIHP 238 +F ++ +RL E SFL G+ I D+ + + F + GI +++Y+N+NK I Sbjct: 180 -QFNPYMIKERLHESSFLFKGLKIVFVDENNPELSQTFIAKDGILEYLKYVNENKKSI-S 237 Query: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 I F + + I V+ Q+ D E I F N++ +GG+H GF+ AM T+N Y Sbjct: 238 KIIPFKGDYEKIVVDGCFQYTDNESELIISFANSVKTSEGGSHENGFKQAMLETINDYSK 297 Query: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPD--PKFSSQTKDKLVSSEVKSAVEQQMNEL 356 K D +EGL V+SV+VP+ + QTK+KL + EVK AV + + + Sbjct: 298 KYKLINNKDKGFDWSDLKEGLSVVLSVQVPEKIIAYEGQTKNKLFTQEVKVAVAKILTQQ 357 Query: 357 LAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRR-KGALDLAGLPGKLADCQERDP 415 L +L EN DAK ++ + A+EAA++A+E T++ K A L GKL Q+++P Sbjct: 358 LFYFLEENQADAKQLIERFKLIKEAKEAAKKAKENTKKLKSAKSERVLYGKLTPAQQKNP 417 Query: 416 ALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALG 475 +E++LVEGDSAGG+AK GR+++ QAILPL+GK++NVEK+R +L ++E+ ++I+ LG Sbjct: 418 LQNEIFLVEGDSAGGTAKSGRDKRFQAILPLRGKVVNVEKSRLQDLLKNEEILSIISCLG 477 Query: 476 CGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLY 535 CGIG + +N L+YH IIIMTDAD DG+HI+ LLLTFFYR M E++E+G VYIA PLY Sbjct: 478 CGIG-NNFNIKNLKYHKIIIMTDADTDGAHIQVLLLTFFYRYMKELIEQGKVYIALAPLY 536 Query: 536 KVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMIN 595 K+ + + ++ + + E L ++ Sbjct: 537 KISAKNSNKSAFAWDDYQLDELRTKYGSYEVQRYKGLGEMNSEQL---------WTTTMD 587 Query: 596 RMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWV 630 +R+ + ++ + D+ ++ + Sbjct: 588 PSKRQLIQVSIQNAAQAERKVSILMGDDASIRKNW 622 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 2/174 (1%) Query: 623 EQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFI 682 +R + L +E + N + + I+ + D + Sbjct: 454 NVEKSRLQDLLKNEEILSIISCLGCGIGNNFNIKNLKYHKIIIMTDADTDGAHIQVLLLT 513 Query: 683 TGGEYRRICTLGEKLRGLLEEDAFIE-RGERRQPVASFEQALDWLVKESRRGLSIQRYKG 741 Y + K+ L I + + A + LD L + +QRYKG Sbjct: 514 FFYRYMKELIEQGKVYIALAPLYKISAKNSNKSAFAWDDYQLDELRTKY-GSYEVQRYKG 572 Query: 742 LGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEEN 795 LGEMN EQLW TTMDP R++++V++++A A++ + LMGD R+ +I EN Sbjct: 573 LGEMNSEQLWTTTMDPSKRQLIQVSIQNAAQAERKVSILMGDDASIRKNWINEN 626 >UniRef50_B9ZQ26 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZQ26_9GAMM Length = 650 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 262/651 (40%), Positives = 376/651 (57%), Gaps = 30/651 (4%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 + Y S SI+VL+GL+ VRKRPGMYIG TD GL H++ E++DNA+DEA+AGH EI V Sbjct: 8 ARQYTSESIQVLEGLEPVRKRPGMYIGGTDSS-GLRHLLNEILDNAVDEAIAGHGDEIEV 66 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 H D S SV D+GRGIP +H E+G+ AA +++T LHAGGKFD+ +YKVSGGLHGVG + Sbjct: 67 VFHQDGSYSVNDNGRGIPIDMHREKGMHAAALLVTTLHAGGKFDNAAYKVSGGLHGVGAA 126 Query: 122 VVNALSQKLELVIQREGKIHRQIY-EHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVT 180 V NA+S + ++ I+R+G+ ++Q + E G P P TGT++RFWP L F Sbjct: 127 VTNAMSTRFDMDIRRDGQRYQQTFTEGGAPSDPEIKRYTGSYTGTLIRFWPDLARFDEDA 186 Query: 181 EFEYEILAKRLRELSFLNSGVSIRLRDK------RDGKEDHFHYEGGIKAFVEYLNKNKT 234 E +++ +A R++ ++L G+ + +R++ + ++ F +E +E L+ + Sbjct: 187 EIDFDFMADRMKRTAYLVPGLQLSIREEVASEGGDEPRQAVFRFES-FSQIIEDLSVDSG 245 Query: 235 PIHPNIFYFST-----EKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 I + + I V VAL+W++ + + + N IP D GTH+ G R A+ Sbjct: 246 DAISEIIEADSAEHIDGQGEIEVAVALRWHERNRTVLAGYANIIPTAD-GTHMTGLRKAV 304 Query: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 T+ +N Y + + GDD + GLIA V+V++ DP F QTK+KL + V V Sbjct: 305 TQAVNNYAEANNLLR-GNQELKGDDIQAGLIAAVAVRLADPLFQGQTKEKLKNGPVTGVV 363 Query: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREM-TRRKGALDLAGLPGKLA 408 + + L ENP A+ +V K A +AREAA +A EM RK + LPGKLA Sbjct: 364 SRAIRAALDHAFEENPKMARAIVEKAKLAQKAREAADKAAEMVVNRKSVISATALPGKLA 423 Query: 409 DCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 468 DCQE+DP+ SEL++VEGDSAGGSAK GR R+ QAILPLKGKILN +A K+L S EV Sbjct: 424 DCQEQDPSKSELFIVEGDSAGGSAKSGREREYQAILPLKGKILNTYRADPAKVLKSDEVK 483 Query: 469 TLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVY 528 L+ ALGCG ++ +KLRYH I+I+ DAD DG HI TL+LT+F+ PE++E G+VY Sbjct: 484 NLMLALGCGPK-SHFDLEKLRYHRIVILADADSDGHHIATLVLTYFHTNAPELIESGYVY 542 Query: 529 IAQPPLYKVKKGKQEQYIKDDEAMDQYQISIAL-DGATLHTNASAPALAGEALEKLVSEY 587 IA PPLY+V+KGKQ Y+KDD ++ + D + + E L Sbjct: 543 IALPPLYRVRKGKQSAYLKDDRELEAFMAQQKNPDKWQVQRFKGLGEMNAEQL------- 595 Query: 588 NATQKMINRMERRYPKAML--KELIYQPTLTEADLSDEQTVTRWVNALVSE 636 + ++ RR + + + E + E R +E Sbjct: 596 --WEAAMDPETRRIARVQYSEQGREGDNEVFEVLMGAEVPPRRAFIEEYAE 644 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 49/177 (27%), Positives = 76/177 (42%), Gaps = 4/177 (2%) Query: 631 NALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRI 690 L S+ H + E+ + IV + D + Sbjct: 475 KVLKSDEVKNLMLALGCGPKSHFDLEKLRYHRIVILADADSDGHHIATLVLTYFHTNAPE 534 Query: 691 CTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWL-VKESRRGLSIQRYKGLGEMNPEQ 749 + L + +G++ + + ++ +++ +QR+KGLGEMN EQ Sbjct: 535 LIESGYVYIALPPLYRVRKGKQSAYLKDDRELEAFMAQQKNPDKWQVQRFKGLGEMNAEQ 594 Query: 750 LWETTMDPESRRMLRVTVKDA--IAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 LWE MDPE+RR+ RV + +++F LMG V PRRAFIEE A KA ID+ Sbjct: 595 LWEAAMDPETRRIARVQYSEQGREGDNEVFEVLMGAEVPPRRAFIEEYAEKAV-IDV 650 >UniRef50_A0LUT9 DNA topoisomerase (ATP-hydrolyzing) n=15 Tax=Actinobacteria (class) RepID=A0LUT9_ACIC1 Length = 703 Score = 584 bits (1504), Expect = e-165, Method: Composition-based stats. Identities = 241/688 (35%), Positives = 357/688 (51%), Gaps = 56/688 (8%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 +++Y + + VL+GL+AVRKRPGMYIG TD GL H V+E++DNA+DEALAG+ I V Sbjct: 25 TDAYTARHLLVLEGLEAVRKRPGMYIGSTD-SRGLMHCVWELLDNAVDEALAGYGDAIDV 83 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 ++AD SV V+D GRGIP + P+ G++ EV+ T LHAGGKF +Y SGGLHGVG S Sbjct: 84 IVYADGSVEVRDTGRGIPVDVEPKTGLTGVEVVFTKLHAGGKFGGGAYGTSGGLHGVGAS 143 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGV--------PQAPLAVTG--------ETEKTGT 165 VVNAL+ +L++ + R+G + G P+AP G + TGT Sbjct: 144 VVNALAARLDVEVDRDGATWTMSFRRGRRGIFDGPGPKAPFRPGGGLAKARRLPRKVTGT 203 Query: 166 MVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAF 225 VRFWP + F + + L R R+ +FL G++I +RD+ + F + GG K F Sbjct: 204 RVRFWPDPQIFLRDARIDLDALIARARQTAFLVPGLAITIRDETTAYAETFRFSGGTKDF 263 Query: 226 VEYLNK--------------------NKTPIHPNIFYFSTEKDGIG---VEVALQWNDGF 262 +YL +T + S +D I V+VAL+W+ G+ Sbjct: 264 ADYLAAEAGAQTSVSGTLQLRGTGQFTETVPVLDDRGHSVPQDVIREMVVDVALRWDSGY 323 Query: 263 QENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAV 322 I F N + GG+H+ GF A+ + ++ K DD EGL AV Sbjct: 324 DTVIRSFVNVVATPKGGSHVTGFERAVVKVVSDAARSARLVK--DEPIVKDDVLEGLTAV 381 Query: 323 VSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLE----NPTDAKIVVGKIIDA 378 VSV+ P+P+F QTK+ L + V ++ L + + ++ V+ K++ A Sbjct: 382 VSVRFPEPQFDGQTKEVLGTPAATRIVFDVVSRGLRAFFSSTRRVDRQASRAVLEKVVAA 441 Query: 379 ARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNR 438 AR R A R +E RRK AL+ A LP KLADC+ D + +EL++VEGDSA G+AK RN Sbjct: 442 ARTRRALRAHKEAQRRKNALESAALPAKLADCRSTDASRTELFIVEGDSALGTAKLARNS 501 Query: 439 KNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTD 498 + QA+LP++GKILNV+KA ML++ E A +I +G G G ++ D +RY +IIMTD Sbjct: 502 EFQALLPIRGKILNVQKADLSDMLNNAECAAIIQVIGAGSG-RSFSLDAVRYGKVIIMTD 560 Query: 499 ADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKG--KQEQYIKDDEAMDQYQ 556 ADVDG+HIR LLLT F+R M +++ G ++ A PPL++++ K Y D + + Sbjct: 561 ADVDGAHIRCLLLTLFFRYMRPLLDAGRIFAAVPPLHRIEVSGRKDPVYTYSDAELHRLL 620 Query: 557 ISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLT 616 + G T L +L + ++ R + L + Sbjct: 621 ADLDRQGIRYKTPQRYKGLGEMDAAQL------AETTMDPAHRVLRRMTLTDAAAAEAAF 674 Query: 617 EADL-SDEQTVTRWVNALVSELNDKEQH 643 E + D ++ A + L+ Sbjct: 675 ELLMGGDVVPRKEFIAASAATLDRSRID 702 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 50/183 (27%), Positives = 77/183 (42%), Gaps = 7/183 (3%) Query: 629 WVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYR 688 + L + + + + ++ + VD + Y Sbjct: 521 LSDMLNNAECAAIIQVIGAGSGRSFSLDAVRYGKVIIMTDADVDGAHIRCLLLTLFFRYM 580 Query: 689 RICTLGEKLRGLLEEDAFIERGERRQPVASFEQ-----ALDWLVKESRRGLSIQRYKGLG 743 R ++ + IE R+ PV ++ L L ++ R + QRYKGLG Sbjct: 581 RPLLDAGRIFAAVPPLHRIEVSGRKDPVYTYSDAELHRLLADLDRQGIRYKTPQRYKGLG 640 Query: 744 EMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENA--LKAAN 801 EM+ QL ETTMDP R + R+T+ DA AA+ F LMG V PR+ FI +A L + Sbjct: 641 EMDAAQLAETTMDPAHRVLRRMTLTDAAAAEAAFELLMGGDVVPRKEFIAASAATLDRSR 700 Query: 802 IDI 804 ID+ Sbjct: 701 IDV 703 >UniRef50_P78016 DNA topoisomerase 4 subunit B n=3 Tax=Mycoplasma RepID=PARE_MYCPN Length = 635 Score = 574 bits (1480), Expect = e-162, Method: Composition-based stats. Identities = 243/641 (37%), Positives = 375/641 (58%), Gaps = 24/641 (3%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 M N+Y ++IK+LKGLDAV+KRPGMYIG TD G HH+++E++DN +DE L+G I Sbjct: 1 MKNNYSEANIKILKGLDAVKKRPGMYIGSTD-SRGFHHLLWEILDNCVDEVLSGFANTIA 59 Query: 61 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 V +HA+N ++V D+GRGIP H + +S + + T LHAGGKFD++SYK++GGLHGVG Sbjct: 60 VVLHAENQITVSDNGRGIPFETHSDSKISTIDTVFTYLHAGGKFDNDSYKIAGGLHGVGA 119 Query: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVT---GETEKTGTMVRFWPSLETFT 177 SVVNALS +L++ ++R+GK++R +YE+G A + ++ GT V F P + F Sbjct: 120 SVVNALSDQLQVTVKRQGKVYRSVYENGGKIKQKAHCIGNAKIDEHGTSVTFRPDPKVFK 179 Query: 178 NVTEFEYEILAKRLRELSFLNSGVSIRLRDKR-DGKEDHFHYEGGIKAFVEYLNKNKTPI 236 + F+ E++ RL+EL+FL + + D+ G+++ F E GI +++ LN + I Sbjct: 180 KI-HFDSELIRARLKELAFLFKKLQLTFVDETGSGEKEVFFTEAGISQYLDELNADSKQI 238 Query: 237 HPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAY 296 IF S +D I +E Q+ DG E + F N+I +GG+H A FR ++ +N Y Sbjct: 239 AQKIF-VSGTEDDIELEAVFQFIDGEDEKLLSFANSIRTSEGGSHEASFRQSVGDVINNY 297 Query: 297 MDKEGYSKKAKVSATGDDAREGLIAVVSVKVPD--PKFSSQTKDKLVSSEVKSAVEQQMN 354 K + K+ + + REGL ++ V +P+ F QTK KL S EVK+ V++ Sbjct: 298 CRKYNFLKERDKNFEASEIREGLNGIIKVNLPEKIIAFEGQTKSKLFSKEVKAVVQKLTQ 357 Query: 355 ELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRR-KGALDLAGLPGKLADCQER 413 + ++L N DAK++V K+ + R+ ++ R++ + L GKLA Q + Sbjct: 358 KHFFQFLERNSVDAKLIVEKLFYNRKLRQELKQQRQIKKNLSNPKAERILFGKLAPAQSK 417 Query: 414 DPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK-MLSSQEVATLIT 472 A EL++VEGDSAGG+AK GR+R QAILPL+GK+LNVEK K ++++E+ TLI Sbjct: 418 KVAERELFVVEGDSAGGTAKMGRDRFLQAILPLRGKVLNVEKINNKKEAINNEELLTLIF 477 Query: 473 ALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQP 532 +G GIG + + +Y IIIMTDAD DG+HI+ LLLTFFYR M ++E+GH+Y+A P Sbjct: 478 CIGTGIG-NNFTIRDRKYDKIIIMTDADNDGAHIQILLLTFFYRYMKPLIEKGHIYLALP 536 Query: 533 PLYKVK-KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQ 591 PLYK + + K+ +Y+ ++ ++QY+ + H N GE + + Sbjct: 537 PLYKFEGRDKKARYLWTEQELEQYRAKHS------HFNVQRYKGLGEMNADQL-----WE 585 Query: 592 KMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNA 632 +N M R+ + L I + D+ + + Sbjct: 586 TTMNPMTRKLIQVKLDNFIQAEKQINVFMGDKTELRKSWIE 626 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 40/174 (22%), Positives = 74/174 (42%), Gaps = 1/174 (0%) Query: 622 DEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEF 681 + + + A+ +E + ++ I+ + D + Sbjct: 456 NVEKINNKKEAINNEELLTLIFCIGTGIGNNFTIRDRKYDKIIIMTDADNDGAHIQILLL 515 Query: 682 ITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKG 741 Y + + L E +++ EQ L+ + ++QRYKG Sbjct: 516 TFFYRYMKPLIEKGHIYLALPPLYKFEGRDKKARYLWTEQELEQYRAK-HSHFNVQRYKG 574 Query: 742 LGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEEN 795 LGEMN +QLWETTM+P +R++++V + + I A++ MGD E R+++IE N Sbjct: 575 LGEMNADQLWETTMNPMTRKLIQVKLDNFIQAEKQINVFMGDKTELRKSWIEAN 628 >UniRef50_P94281 DNA gyrase subunit B n=211 Tax=cellular organisms RepID=GYRB_BARBK Length = 692 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 252/652 (38%), Positives = 373/652 (57%), Gaps = 22/652 (3%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 ++Y++SSI++L+GL+ VR RPGMYIG TD LHH+ E++DNA+DEA+AG+ I +T Sbjct: 51 STYNASSIRILEGLEPVRLRPGMYIGGTD-SKALHHLFSEIIDNAMDEAVAGYADLIDIT 109 Query: 63 IHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 + ++N ++V D+GRGIP HP+ S EVIMT LH+GGKFD +Y+ SGGLHGVG+S Sbjct: 110 LDSNNYLTVTDNGRGIPIENHPQIPDKSTLEVIMTHLHSGGKFDGKAYQTSGGLHGVGIS 169 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGET-EKTGTMVRFWPSLETFTNVT 180 VVNALS +E+ + RE K++RQ + G+PQ+ L G+ + GT V F P + F T Sbjct: 170 VVNALSDDMEVEVARERKLYRQRFSRGIPQSGLEELGDVYNRRGTRVCFHPDSQIFGENT 229 Query: 181 EFEYEILAKRLRELSFLNSGVSIRLRD--------KRDGKEDHFHYEGGIKAFVEYLNKN 232 F+ E + K R ++L +GV IR K ++D F++ G+K ++ KN Sbjct: 230 AFDPEKIYKIARSKAYLFNGVKIRWNCDPAALKDAKNIPEKDVFYFPDGLKDYLSLSLKN 289 Query: 233 KTPIHPNIFYFSTEK--DGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMT 290 K + IF T++ VE A+ W++G I + N IP +GGTH G R + Sbjct: 290 KHLVTAEIFSGKTQQLSGHGSVEWAIAWHNG-DAYIQSYCNTIPTEEGGTHETGLRQTLL 348 Query: 291 RTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVE 350 R L AY + K T DD + ++SV + DP+F QTKD+L ++E + VE Sbjct: 349 RGLKAYAE--LIGNKRASIITSDDVMASTVVMLSVFIKDPQFVGQTKDRLATTEAQRIVE 406 Query: 351 QQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADC 410 + + +L +P +A ++ +I+ A R R+ RE+ RK A+ LPGKLADC Sbjct: 407 NAIRDPFDHWLANSPHEATKLLNWVIERAEERLKRRQDREI-NRKTAVRKLRLPGKLADC 465 Query: 411 QERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATL 470 + A +EL++VEGDSAGGSAKQ RNR NQAILPL+GKILNV A +KM SSQ +A L Sbjct: 466 SQNSAAGAELFIVEGDSAGGSAKQARNRTNQAILPLRGKILNVASAAREKMSSSQTIADL 525 Query: 471 ITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIA 530 I ALGCG + LRY IIIMTDADVDG+HI +LL+TFF++++P+++ GH+Y+A Sbjct: 526 ILALGCGTRSKY-REEDLRYERIIIMTDADVDGAHIASLLITFFFQEIPDLIRAGHLYLA 584 Query: 531 QPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNAT 590 PPLY++ +G + Y +DD D+ + + GE + + E Sbjct: 585 VPPLYRISQGGKVAYARDDSHKDELLKTEFTGKGKI--EIGRFKGLGEMRAEQLKETTMN 642 Query: 591 QKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQ 642 K + + + T+ + + R++ + N+ + Sbjct: 643 PKKRTLLRVSID--TFEMQETKETVQNLMGTKPEERFRFIQESSTFANNLDI 692 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 67/186 (36%), Gaps = 4/186 (2%) Query: 623 EQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFI 682 S+ E +E I+ + VD + Sbjct: 507 NVASAAREKMSSSQTIADLILALGCGTRSKYREEDLRYERIIIMTDADVDGAHIASLLIT 566 Query: 683 TGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKE--SRRGLSIQRYK 740 + L + I +G + + L E + + I R+K Sbjct: 567 FFFQEIPDLIRAGHLYLAVPPLYRISQGGKVAYARDDSHKDELLKTEFTGKGKIEIGRFK 626 Query: 741 GLGEMNPEQLWETTMDPESRRMLRVTVK--DAIAADQLFTTLMGDAVEPRRAFIEENALK 798 GLGEM EQL ETTM+P+ R +LRV++ + + LMG E R FI+E++ Sbjct: 627 GLGEMRAEQLKETTMNPKKRTLLRVSIDTFEMQETKETVQNLMGTKPEERFRFIQESSTF 686 Query: 799 AANIDI 804 A N+DI Sbjct: 687 ANNLDI 692 >UniRef50_Q98RQ4 DNA gyrase subunit B n=13 Tax=cellular organisms RepID=Q98RQ4_GUITH Length = 684 Score = 566 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 243/645 (37%), Positives = 374/645 (57%), Gaps = 24/645 (3%) Query: 10 IKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSV 69 I VL+GL+ VR+RPG++IG T G HH+V+E+VDN++DE++AG C+++ V I++D SV Sbjct: 49 ITVLEGLEPVRRRPGVFIGSTG-LKGFHHLVYEIVDNSVDESMAGFCEKVDVIINSDKSV 107 Query: 70 SVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQK 129 +++D+GRGIPT +HP +A E ++T+LHAGGKF YKVSGGLHGVGVSVVN LS+ Sbjct: 108 TIRDNGRGIPTDLHPITNKTALETVLTILHAGGKFGGGGYKVSGGLHGVGVSVVNGLSEY 167 Query: 130 LELVIQREGKIHRQIYEHGVPQAPLAVTGETEK--TGTMVRFWPSLETFTNVTEFEYEIL 187 L + QR + + G + ++ + GT + F P + F + +F+ ++ Sbjct: 168 LNINTQRNQRKIGMRFVRGKKISECNISSFKKNIINGTTINFKPDYQIFFSEFDFDSYVI 227 Query: 188 AKRLRELSFLNSGVSIRLRDKRDGKEDH--FHYEGGIKAFVEYLNKNKTPIHPNIFYFST 245 RL EL+FLNS + + L D+R F ++GGI ++ + NK +H N S Sbjct: 228 GGRLNELAFLNSNLKLLLEDRRSKIIKSSLFLHDGGIMEYINEMTINKKRLH-NPIILSK 286 Query: 246 EKDGIGVEVALQWN-DGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSK 304 + +E+ W+ + +QENI F NNI +GGTH+ GF+ +T+ +N K+ SK Sbjct: 287 IFNNSQIEIGFVWSSEQYQENILSFVNNIRTVEGGTHVDGFKQGITKLVNLLSKKKIKSK 346 Query: 305 KAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA-EYLLE 363 + S +G+ REGL +++VK +P+F Q K KL + ++K VE + E ++ Sbjct: 347 EKLNSISGEFIREGLTCLINVKTSEPEFEGQIKSKLGNPDIKFLVENLIKEEGEIHFIEN 406 Query: 364 NPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLV 423 N IV+ K I A A EA+++A+E+ R+K L+ LPGKL+DC E++P SE+++V Sbjct: 407 NSNLLNIVLEKAISAMNAYEASKKAKELVRKKSILEGITLPGKLSDCSEKNPQFSEIFIV 466 Query: 424 EGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEY 483 EGDSAGGSAKQ R+R+ QAILPL+GKI+N+EK K+ ++ E+ +LI+ALG G+ ++ Sbjct: 467 EGDSAGGSAKQARDRRFQAILPLRGKIINIEKNDEKKIYNNTEIQSLISALGLGVRGNDE 526 Query: 484 NPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK----- 538 + LRYH IIIMTDADVDG+HIRTLLLTFFYR E++++G VYIA PPLYK++ Sbjct: 527 DLSNLRYHKIIIMTDADVDGAHIRTLLLTFFYRYQKELIDKGFVYIACPPLYKIENKKNK 586 Query: 539 -KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRM 597 K QY + ++ S + + + + ++ Sbjct: 587 NLDKNTQYCYSEGELEYIIQSSHFNKNIQRFKGLGEMMPEQ----------LWKTTMSPE 636 Query: 598 ERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQ 642 R K L + + E + + + + + L + Sbjct: 637 MRILKKIKLSDAKRADKIFEVLMGSKVPERKKFIQIQASLIKIDS 681 Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats. Identities = 64/335 (19%), Positives = 122/335 (36%), Gaps = 54/335 (16%) Query: 522 VERGHVYIAQPPLYKVKKG-----KQEQYIKDDEAMDQYQISIALDGATLHTNASAPALA 576 + + L VK Q + + + ++ + +H + L Sbjct: 352 ISGEFIREGLTCLINVKTSEPEFEGQIKSKLGNPDIKFLVENLIKEEGEIHFIENNSNLL 411 Query: 577 GEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWV-NALVS 635 LEK +S NA + E K++L+ + L++ + Q ++ + Sbjct: 412 NIVLEKAISAMNAYEASKKAKELVRKKSILEGITLPGKLSDCSEKNPQFSEIFIVEGDSA 471 Query: 636 ELNDKEQHGSQWKFDV-------------------------------------HTNAEQN 658 + K+ +++ + + Sbjct: 472 GGSAKQARDRRFQAILPLRGKIINIEKNDEKKIYNNTEIQSLISALGLGVRGNDEDLSNL 531 Query: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIE-------RGE 711 + I+ + VD + + YR L +K + + + Sbjct: 532 RYHKIIIMTDADVDGAHI--RTLLLTFFYRYQKELIDKGFVYIACPPLYKIENKKNKNLD 589 Query: 712 RRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI 771 + E L+++++ S +IQR+KGLGEM PEQLW+TTM PE R + ++ + DA Sbjct: 590 KNTQYCYSEGELEYIIQSSHFNKNIQRFKGLGEMMPEQLWKTTMSPEMRILKKIKLSDAK 649 Query: 772 AADQLFTTLMGDAVEPRRAFIEENA--LKAANIDI 804 AD++F LMG V R+ FI+ A +K ++DI Sbjct: 650 RADKIFEVLMGSKVPERKKFIQIQASLIKIDSLDI 684 >UniRef50_D0WQJ3 Putative DNA gyrase subunit B n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WQJ3_9ACTO Length = 735 Score = 566 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 238/709 (33%), Positives = 359/709 (50%), Gaps = 85/709 (11%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 SY + ++VL+GL+AVRKRPGMYIG TD GL H ++E++DNA+DEAL GH + V Sbjct: 16 ESYTARHLQVLEGLEAVRKRPGMYIGSTD-SRGLMHCLWEIIDNAVDEALEGHADAVEVR 74 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 ++AD SV V+D+GRG+P P G+S EV+ T LHAGGKF SY SGGLHGVG SV Sbjct: 75 LYADGSVEVRDNGRGVPVDEVPGVGLSGVEVVYTKLHAGGKFGGGSYGSSGGLHGVGASV 134 Query: 123 VNALSQKLELVIQREGKIHRQIYEHGVP---------------------QAPLAVTGE-- 159 VNALS+++++ + R GK ++ + G P + L V G+ Sbjct: 135 VNALSERMDVQVDRGGKTYQMQFHRGEPGRFSDGASGPDPRAPFSAFTESSVLDVVGKVA 194 Query: 160 TEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRD--------- 210 K+GT VR+W E F F YE L +R R+ +FL G++I L D+R+ Sbjct: 195 KNKSGTRVRYWADPEIFLASAAFSYEELVERARQTAFLVPGLTISLVDEREGAAGENAAG 254 Query: 211 ----------------GKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTE-------- 246 + + F ++GG FV++L + Sbjct: 255 ENAEGEGDEGQAPHEGPRTETFRFDGGTVDFVDFLAPDAAVTATMRLTGEGTFAEKVPVL 314 Query: 247 ------------KDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLN 294 + + V+VAL+W ++ + F N I GGTH +GF + + + Sbjct: 315 DAESGHLVSREVERAVAVDVALRWGKDYETRVESFVNIIRTPGGGTHQSGFEQGLMKVVR 374 Query: 295 AYMDKEGYSKK---AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQ 351 + ++ K DD GL AVV+V++P+P+F QTK+ L +S V+ V Sbjct: 375 SLVESNSRRLKMSAKDPRIEKDDVLAGLTAVVTVRLPEPQFEGQTKEILGTSAVRGIVSG 434 Query: 352 QMNELLAEYL----LENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKL 407 + L L + T+ ++ K++ RAR AR +E++RRK AL+ + LP KL Sbjct: 435 VVERELGAILGSSKRDQKTETSRLLEKVVAEMRARVTARMHKEISRRKNALEASSLPAKL 494 Query: 408 ADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEV 467 ADC+ D A +EL++VEGDSA G+AK R+ + QA+LP++GKILNV+KA +L ++EV Sbjct: 495 ADCRSEDVAETELFIVEGDSALGTAKLARSSEFQALLPIRGKILNVQKASTADILKNKEV 554 Query: 468 ATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHV 527 + +I +G G G ++ RY +I+MTDADVDG+HIRTLLLT F+R M +V+ G V Sbjct: 555 SEIIQVVGAGSG-RTFDLPAARYGKVIMMTDADVDGAHIRTLLLTLFFRYMRPLVQEGRV 613 Query: 528 YIAQPPLYKVKK------GKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALE 581 Y A PPL++++ K Y ++ + + G + GE Sbjct: 614 YAAVPPLHRIEVSGGKGGKKSYIYTYSEDQLHAELRKLERAGKSYREPIQRYKGLGEMDA 673 Query: 582 KLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWV 630 ++E RR + L+ T+ E + ++ R Sbjct: 674 HQLAETTMDPSRRTL--RRIRMEDERALMEAETVFELLMGNDVAPRREF 720 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 44/182 (24%), Positives = 74/182 (40%), Gaps = 13/182 (7%) Query: 633 LVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICT 692 L ++ + + + ++ + VD + Y R Sbjct: 549 LKNKEVSEIIQVVGAGSGRTFDLPAARYGKVIMMTDADVDGAHIRTLLLTLFFRYMRPLV 608 Query: 693 LGEKLRGLLEEDAFIE----RGERRQPVASFEQ-----ALDWLVKESRRGLS-IQRYKGL 742 ++ + IE +G ++ + ++ + L L + + IQRYKGL Sbjct: 609 QEGRVYAAVPPLHRIEVSGGKGGKKSYIYTYSEDQLHAELRKLERAGKSYREPIQRYKGL 668 Query: 743 GEMNPEQLWETTMDPESRRMLRVTVKDA---IAADQLFTTLMGDAVEPRRAFIEENALKA 799 GEM+ QL ETTMDP R + R+ ++D + A+ +F LMG+ V PRR FI E A Sbjct: 669 GEMDAHQLAETTMDPSRRTLRRIRMEDERALMEAETVFELLMGNDVAPRREFIVEGAAAV 728 Query: 800 AN 801 Sbjct: 729 DR 730 >UniRef50_B3LD45 DNA gyrase subunit b, putative n=1 Tax=Plasmodium knowlesi strain H RepID=B3LD45_PLAKH Length = 992 Score = 563 bits (1452), Expect = e-159, Method: Composition-based stats. Identities = 272/947 (28%), Positives = 404/947 (42%), Gaps = 218/947 (23%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 YD+ I +L+GL+AVRKRPGMYIG+TD GLH ++FE++DN++DE C EI + Sbjct: 108 CKDYDAKDIVILEGLEAVRKRPGMYIGNTD-VKGLHQILFEIIDNSVDEYNNFECNEIKI 166 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNS------YKVSGG- 114 IH D SV+++D+GRGIP IH + SA E ++TVLH+G KF D + S G Sbjct: 167 VIHEDESVTIEDNGRGIPCDIHEKTKKSALETVLTVLHSGAKFVDEDTAADLVERTSVGG 226 Query: 115 ---------LHGVG-----VSVVNALSQK------------------------------- 129 G G VV L +K Sbjct: 227 MSSEIGEDERGGKGEQKSKAKVVEKLDEKNSKKKNPKEASQKSASQMYRFSSGLHGVGLS 286 Query: 130 --------LELVIQREGKIHRQIYEHGVPQAPLAV-TGETEKTGTMVRFWPSLETFTNVT 180 +++ + R GKIH E G PL+V K GT + + P + F N Sbjct: 287 VANALSSFMKVKVFRGGKIHSIELEKGKVVTPLSVRECPVSKRGTQIHYKPDHDIFKNTI 346 Query: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--------------------------- 213 E++ R+ +L++LN ++ D+R K+ Sbjct: 347 RHNAELIKNRIHQLAYLNDRLTFYFYDERSAKKVPTSVHLAKGNEADEVDKREDKTTDAV 406 Query: 214 --------------DHFHYEGGIKAFVEYLNKNKTPIHPN---IFYFSTEKDGIGVEVAL 256 + +EGG+ ++E L KNK + + I S + + +++ + Sbjct: 407 NTTVEHNNLDFYPYEVIKHEGGLNEYMESLTKNKASLFKDSNKIISISCHQKNVHIDLRI 466 Query: 257 QWNDG-FQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDA 315 +W G + E+I F NN+ DGGTH+ + A++R +N + K+ + K V+ G+ Sbjct: 467 KWTQGQYHEHIVSFVNNVNTTDGGTHVDAMKYAISRCVN-FNIKKNEATKNFVNIPGEYI 525 Query: 316 REGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKI 375 REG+ A++S+K+ +P+F QTK KL S +K +E + E L+E P + K Sbjct: 526 REGMTAILSIKMNNPEFEGQTKTKLGSHFLKPILESAIFEKLSEIFDFEPNLLNTIYLKA 585 Query: 376 IDAARAREAARRAREMTRRKGALDLAG-LPGKLADCQERDPALSELYLVEGDSAGGSAKQ 434 + A + E A+ AR++ R K + LPGKL DC D +E+++VEGDSA GSAKQ Sbjct: 586 LQAKASDEEAKAARDLIRSKNNQYYSTILPGKLVDCISDDINRNEIFIVEGDSAAGSAKQ 645 Query: 435 GRNRKNQAILPLKGKILNVEK-ARFDKMLSSQEVATLITALGCGIGRDEYNPDK------ 487 RNR+ QAILPLKGKILNVEK ++ + E+ +LITA+G I D K Sbjct: 646 ARNREIQAILPLKGKILNVEKIKNNKRIFENSELKSLITAIGLSISCDNSKMAKGKNMLN 705 Query: 488 --------------------------------------LRYHSIIIMTDADVDGSHIRTL 509 LRY IIIMTDADVDG HIR L Sbjct: 706 NKKKDIKKKYDLKCSKKENVQVNNAMVNKKKNTLFDTPLRYGKIIIMTDADVDGEHIRIL 765 Query: 510 LLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTN 569 LLTF YR I++ G+V++A PPLYKV + + M Q+ +S +HT Sbjct: 766 LLTFLYRFQKNIIQNGNVFVACPPLYKVTYNRFFDNTIKETVMKQFNVSTRNSKTLIHTY 825 Query: 570 ASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRW 629 + + L L+ + +L R Sbjct: 826 SD------DELNVLLGLLEKDRS------------------SHAEQRSVELGKGGLARRG 861 Query: 630 VNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRR 689 L+ + + R + + ++G + Sbjct: 862 NIPSEDHLSSLTSLDNLNFRYNSADEVTEKERLNTDDRNAAHTANTAISTAPLSGNAFFT 921 Query: 690 ICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQ 749 E IQR+KGLGEM +Q Sbjct: 922 FSKRYE----------------------------------------IQRFKGLGEMMADQ 941 Query: 750 LWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENA 796 LW TTMDP R+++RVTV DA+ A+ L +LMG+ + R++FI EN+ Sbjct: 942 LWSTTMDPSVRKLIRVTVNDAMRANNLIFSLMGEDSKLRKSFILENS 988 >UniRef50_C0W359 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W359_9ACTO Length = 746 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 248/747 (33%), Positives = 370/747 (49%), Gaps = 108/747 (14%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 S+SY + + VL+GL+AVRKRPGMYIG TD GL H V+E++DN++DEAL G+ I V Sbjct: 5 SSSYSARHLSVLEGLEAVRKRPGMYIGSTDQ-RGLMHCVWEIIDNSVDEALEGYGDSIAV 63 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 T+H D S+ V+D+GRG+P + P G++ E++ T LHAGGKF SY +GGLHGVG S Sbjct: 64 TVHEDGSIEVRDNGRGVPVDVEPGSGLTGVELVYTKLHAGGKFGGGSYGAAGGLHGVGAS 123 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVP----------------------QAPLAVTGE 159 VVNALS+++++ + R GK + + GVP + L V G+ Sbjct: 124 VVNALSERMDVAVDRGGKTYAMSFHRGVPGVFDDPDPAHPRPDTPFTEYTEASELRVIGK 183 Query: 160 TEK--TGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRD------- 210 ++ +GT VR+W + F +E++ L RLR+ SFL G+S+ L D+R Sbjct: 184 VKRGVSGTRVRYWADPQIFPRPSEYDAAALRARLRQTSFLVPGLSLTLTDERSAEEAARA 243 Query: 211 ---------------------------------------GKEDHFHYEGGIKAFVEYLNK 231 + F +GG + FV++L Sbjct: 244 EKAAPSGSGAAGDDPALRASAKNATEEASDLFASQTQAPEGSEVFLAKGGTRDFVDFLAT 303 Query: 232 NKTPIHPNIFYFSTEKDG--------------------IGVEVALQWNDGFQENIYCFTN 271 + + V+VAL+W G+ F N Sbjct: 304 DASVTDTFRLTGEGTYTETVQQLDKKSGHLRPVEVERTCSVDVALRWGIGYDTIERSFVN 363 Query: 272 NIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK---AKVSATGDDAREGLIAVVSVKVP 328 I GGTHL GF A+T+ L +D + K DD G+ AVV+V+VP Sbjct: 364 IIATPMGGTHLTGFEQAVTKVLRKQIDSNARALKVTARDGKIEKDDILAGMTAVVTVRVP 423 Query: 329 DPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAK----IVVGKIIDAARAREA 384 +P+F QTK+ L ++ V+ V + + + L L + D K + K++ RAR + Sbjct: 424 EPQFEGQTKEVLGTAPVRQIVAKVVEKELTALLTSSKRDLKTQSRALQEKVVGEMRARIS 483 Query: 385 ARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAIL 444 AR +E+TRRK AL+ + LP KLADC+ D A SEL++VEGDSA G+AK RN + QA+L Sbjct: 484 ARMHKEITRRKTALETSTLPAKLADCRSDDVAASELFIVEGDSALGTAKNARNSEFQALL 543 Query: 445 PLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGS 504 P++GKILNV+KA ML + E + +I +G G G ++ D RY +I+MTDADVDG+ Sbjct: 544 PIRGKILNVQKASQADMLRNAECSAIIQVVGAGSG-RTFDLDSARYGKVILMTDADVDGA 602 Query: 505 HIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKV------KKGKQEQYIKDDEAMDQYQIS 558 HIRTLLLT F+R M ++E G VY A PPL+++ ++ K+ Y D+ + + Sbjct: 603 HIRTLLLTLFFRYMRPMIEAGRVYAAVPPLHRIEVSAQGRRKKEVIYTYSDDELVRTLRK 662 Query: 559 IALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEA 618 + G + GE ++E + RR EL+ + E Sbjct: 663 LEKQGRSFK-EPQRYKGLGEMDAHQLAETTMEPEHRTL--RRITLGDEAELLEAENVFEL 719 Query: 619 DLSDEQTVTRWVNALVSELNDKEQHGS 645 + R ++ D+E+ + Sbjct: 720 LMGSSVEPRRDFIVEGAQDIDRERIDA 746 Score = 149 bits (375), Expect = 6e-34, Method: Composition-based stats. Identities = 47/181 (25%), Positives = 70/181 (38%), Gaps = 12/181 (6%) Query: 633 LVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICT 692 L + + + + ++ + VD + Y R Sbjct: 561 LRNAECSAIIQVVGAGSGRTFDLDSARYGKVILMTDADVDGAHIRTLLLTLFFRYMRPMI 620 Query: 693 LGEKLRGLLEEDAFI------ERGERRQPVASFEQA---LDWLVKESRRGLSIQRYKGLG 743 ++ + I R + S ++ L L K+ R QRYKGLG Sbjct: 621 EAGRVYAAVPPLHRIEVSAQGRRKKEVIYTYSDDELVRTLRKLEKQGRSFKEPQRYKGLG 680 Query: 744 EMNPEQLWETTMDPESRRMLRVTVKDAI---AADQLFTTLMGDAVEPRRAFIEENALKAA 800 EM+ QL ETTM+PE R + R+T+ D A+ +F LMG +VEPRR FI E A Sbjct: 681 EMDAHQLAETTMEPEHRTLRRITLGDEAELLEAENVFELLMGSSVEPRRDFIVEGAQDID 740 Query: 801 N 801 Sbjct: 741 R 741 >UniRef50_P43703 DNA topoisomerase 4 subunit B n=456 Tax=Bacteria RepID=PARE_HAEIN Length = 632 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 220/633 (34%), Positives = 330/633 (52%), Gaps = 16/633 (2%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 M+ +Y + I VLK L+ V+ RPGMY TD +H+ EV+DN++DEALAG +I Sbjct: 1 MTTNYSAQEITVLKDLEPVQIRPGMY---TDTTR-PNHLAQEVIDNSVDEALAGFATKIE 56 Query: 61 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 V +H D S+ V D+GRG+P IHP EGVS EVI+T LHAGGKF + +Y+ +GGLHGVG+ Sbjct: 57 VILHPDQSIEVTDNGRGMPVDIHPTEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGI 116 Query: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK--TGTMVRFWPSLETFTN 178 SVVNALS+++++ ++R G+I++ +E+G L + G + TGT+V F P+ + F + Sbjct: 117 SVVNALSERVDIQVKRNGEIYKIAFENGSKVEELEIIGTCGRRTTGTIVHFKPNPKYF-D 175 Query: 179 VTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHP 238 +F L LR + L SG+ I+ DK + +D + YE G+ ++ + Sbjct: 176 SAKFSVSRLRHLLRAKAVLCSGLEIKFIDKVNNTQDIWLYEDGLSDYLIEAVNGFETLPK 235 Query: 239 NIFYFSTEKDGIGVEVALQWNDGFQENI-YCFTNNIPQRDGGTHLAGFRAAMTRTLNAYM 297 F + V AL W E I + N IP GGTH+ G R + + + Sbjct: 236 KPFVGEFKGANEAVSWALLWLPEGGELIGESYVNLIPTIQGGTHVNGLRQGLLDAIREFC 295 Query: 298 DKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELL 357 + + V T DD + ++S+K+ D +F+ QTK++L S + V + + Sbjct: 296 EFRNLLPRG-VKLTADDIWDRCSYILSLKMQDAQFAGQTKERLSSRQSAVFVSGVLKDAF 354 Query: 358 AEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPAL 417 + +L +N DA+ + I +A+ R RA + RK + LPGKLADC +D Sbjct: 355 SLWLNQNVQDAEKLAEIAISSAQRRL---RAAKKVVRKKLVSGPALPGKLADCGSQDLEK 411 Query: 418 SELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCG 477 +EL+LVEGDSAGGSAKQ R+R+ QAILPL+GKILN + D++L S E+ + ALG Sbjct: 412 TELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPDQVLGSTEIHDIAVALG-- 469 Query: 478 IGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKV 537 I D + +LRY + I+ DAD DG HI TLL F R P++V+ GHVY+A PPLY++ Sbjct: 470 IDPDSNDLSQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMPPLYRI 529 Query: 538 KKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRM 597 K+ Y D+ + + N GE + E + Sbjct: 530 DLNKEVFYALDENEKEAILDRLKNKKG--KPNVQRFKGLGEMNPSQLRETTMDPNTRRLV 587 Query: 598 ERRYPKAMLKELIYQPTLTEADLSDEQTVTRWV 630 + Y + + + Sbjct: 588 QLTYDLGEDQGSDTLELMDMLLAKKRSEDRKNW 620 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 92/610 (15%), Positives = 180/610 (29%), Gaps = 68/610 (11%) Query: 228 YLNKNKTPIHPN-IFYFSTEKDGIGVEVALQWNDGFQENIYC-------FTNNIPQRDGG 279 + K + +HP+ + G+ V++ E I F+N + GG Sbjct: 51 FATKIEVILHPDQSIEVTDNGRGMPVDIHPTEGVSGVEVILTKLHAGGKFSNKNYEFAGG 110 Query: 280 THLAGFR--AAMTRTLNAYMDKE---------GYSKKAKVSATGDDAREGLIAVVSVKVP 328 H G A++ ++ + + SK ++ G R +V K P Sbjct: 111 LHGVGISVVNALSERVDIQVKRNGEIYKIAFENGSKVEELEIIGTCGRRTTGTIVHFK-P 169 Query: 329 DPK-FSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARR 387 +PK F S K +V + + LL + + K+ + Sbjct: 170 NPKYFDS----------AKFSVSR-LRHLLRAKAVLCSGLEIKFIDKVNNTQDIWLYEDG 218 Query: 388 AR----EMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAI 443 E L G+ E + + L+L EG G + Q Sbjct: 219 LSDYLIEAVNGFETLPKKPFVGEFKGANEA-VSWALLWLPEGGELIGESYVNLIPTIQGG 277 Query: 444 LPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNP-DKLRYHSIIIMTDADVD 502 + G + + D + E L L G+ + D+ Y + M DA Sbjct: 278 THVNG----LRQGLLDAIREFCEFRNL---LPRGVKLTADDIWDRCSYILSLKMQDAQFA 330 Query: 503 GSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMD--QYQISIA 560 G L + + G + A + + + Q + + Q + Sbjct: 331 GQTKERL-----SSRQSAVFVSGVLKDA----FSLWLNQNVQDAEKLAEIAISSAQRRLR 381 Query: 561 LDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADL 620 + + L S+ ++ + + Sbjct: 382 AAKKVVRKKLVSGPALPGKLADCGSQDLEKTELFLVEGDSAGGSAKQ--ARDREYQAILP 439 Query: 621 SDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN---LFEPIVRVRTHGVDTDYPL 677 + + W + L E H + ++ + + + D + Sbjct: 440 LRGKILNTWEVSPDQVLGSTEIHDIAVALGIDPDSNDLSQLRYGKVCILADADSDGLHIA 499 Query: 678 DHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLV--KESRRGLS 735 + + + I+ + + L K + + Sbjct: 500 TLLCALFLRHFPKLVQDGHVYVAMPPLYRIDLNKEVFYALDENEKEAILDRLKNKKGKPN 559 Query: 736 IQRYKGLGEMNPEQLWETTMDPESRRMLRVTV----KDAIAADQLFTTLMGDA-VEPRRA 790 +QR+KGLGEMNP QL ETTMDP +RR++++T +L L+ E R+ Sbjct: 560 VQRFKGLGEMNPSQLRETTMDPNTRRLVQLTYDLGEDQGSDTLELMDMLLAKKRSEDRKN 619 Query: 791 FIEENALKAA 800 +++ + Sbjct: 620 WLQAKGDQVD 629 >UniRef50_D1C5K6 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C5K6_SPHTD Length = 674 Score = 555 bits (1429), Expect = e-156, Method: Composition-based stats. Identities = 241/655 (36%), Positives = 366/655 (55%), Gaps = 29/655 (4%) Query: 4 SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTI 63 Y + I+VL+G++A+R RPGMYIG T TGLHH+++E +DNA DEA+AG+ K I V I Sbjct: 33 GYSGADIRVLEGIEAIRTRPGMYIGSTGT-TGLHHLIWEALDNATDEAIAGYGKNIWVEI 91 Query: 64 HADNSVSVQDDGRGIPTGIHPEEGV--SAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 D V+V+D+ RGIP G A VIMTV H+GGKF+ +YK +GGLHGVG + Sbjct: 92 DRDGWVTVRDEARGIPFDPKEINGKTLPTATVIMTVPHSGGKFEQGAYKTAGGLHGVGAT 151 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTN-VT 180 V+NALS++LEL I R+G+ Q + GVP + ++TGT +R+ E F + Sbjct: 152 VINALSERLELTIWRDGQQFFQTFTRGVPGKHTITPCDPKRTGTQLRWLFDREIFADPAV 211 Query: 181 EFEYEILAKRLRELSFLNSG----VSIRLRDKRDGKEDHFHYEGGIKAFVEYL---NKNK 233 ++ +++ RLR ++LN G + I D + E FH E G+ +VE L +K Sbjct: 212 GYQRDVVESRLRAAAYLNRGIAYHLRIWDDDAGEMVEQTFHSERGLVDYVEELRPRDKES 271 Query: 234 TPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTL 293 P+ + + +D + +EVA+Q N G + + F N + +GGTH +GF+AA+T+ L Sbjct: 272 QPLFKEVVAIAETRDDVVIEVAVQPNRGERTRVVSFANGVRTIEGGTHESGFQAALTKVL 331 Query: 294 NAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQM 353 N + G +KK + D REGL+A+VSVK+ +P+F QTK++L +S V V + Sbjct: 332 NDQAIRLGVTKKRE--FDADLIREGLVAIVSVKLTNPQFEGQTKNRLTNSGVDGIVRSVV 389 Query: 354 NELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMT-----RRKGALDLAGLPGKLA 408 + L ++ N + A+ V + +AR+AA+ A + RR GAL A + K Sbjct: 390 GDALTRWMEANESAAREWVRTLEQRRKARDAAKAAARLVMTGKSRRNGALLDAAISDKFI 449 Query: 409 DCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 468 C +DP +ELYLVEGDSAGGSA QGR QAIL L GK LNV +A +++ ++E+ Sbjct: 450 PCNTKDPERAELYLVEGDSAGGSASQGRFSDFQAILKLSGKPLNVARANIERVAKNEEIR 509 Query: 469 TLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVY 528 TL+ +G G R ++ +LR+H IIIMTDADVDG HI+ LLLT F +++P+++ERGH+Y Sbjct: 510 TLLQVIGTG-SRQAFDISRLRFHKIIIMTDADVDGMHIQALLLTLFLQELPQLIERGHIY 568 Query: 529 IAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYN 588 +A PPLY V++ + +++DDEA+ ++ L + L Sbjct: 569 LAAPPLYSVRQNGKVTWLRDDEALREWM-KGRKGPFELKRYKGLGEMNPRELR------- 620 Query: 589 ATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQH 643 + ++ RR + L++ + + D R +E Sbjct: 621 --ETTMDPERRRLRRVTLEDAALAERMVYELMEDTNAEGRRTFLAQRARKYQEID 673 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 49/184 (26%), Positives = 75/184 (40%), Gaps = 4/184 (2%) Query: 623 EQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFI 682 +E + + F I+ + VD + Sbjct: 493 NVARANIERVAKNEEIRTLLQVIGTGSRQAFDISRLRFHKIIIMTDADVDGMHIQALL-- 550 Query: 683 TGGEYRRICTLGEKLRGLLEEDAFIE-RGERRQPVASFEQALDWLVKESRRGLSIQRYKG 741 + + L E+ L R + ++AL +K + ++RYKG Sbjct: 551 LTLFLQELPQLIERGHIYLAAPPLYSVRQNGKVTWLRDDEALREWMKGRKGPFELKRYKG 610 Query: 742 LGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGD-AVEPRRAFIEENALKAA 800 LGEMNP +L ETTMDPE RR+ RVT++DA A+++ LM D E RR F+ + A K Sbjct: 611 LGEMNPRELRETTMDPERRRLRRVTLEDAALAERMVYELMEDTNAEGRRTFLAQRARKYQ 670 Query: 801 NIDI 804 ID+ Sbjct: 671 EIDV 674 >UniRef50_Q4AAR9 Topoisomerase IV subunit B n=9 Tax=Mycoplasma RepID=Q4AAR9_MYCHJ Length = 642 Score = 551 bits (1420), Expect = e-155, Method: Composition-based stats. Identities = 236/654 (36%), Positives = 368/654 (56%), Gaps = 21/654 (3%) Query: 4 SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTI 63 +Y +K+LKGL+AVRKRPGMYIG TD GLH +++E+ DNAIDEA+AG EI + I Sbjct: 2 TYSVEKLKLLKGLEAVRKRPGMYIGSTDKN-GLHQLIWEIFDNAIDEAIAGFANEISLII 60 Query: 64 HADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVV 123 ++DNS+ + D+GRGIPT IH + G + E++ + LH+G KF + YK +GGLHGVG SVV Sbjct: 61 NSDNSIEISDNGRGIPTEIHKKTGKTGVELVFSELHSGAKFSTDIYKTAGGLHGVGSSVV 120 Query: 124 NALSQKLELVIQREGKIHRQIY-EHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEF 182 NALS+KLE+ I R+ K+ + G + + G++ TGT +RFWP F++ +EF Sbjct: 121 NALSEKLEVYINRDKKLFYTSFINGGKIETRTKIIGKSATTGTKIRFWPDFSLFSH-SEF 179 Query: 183 EYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFY 242 + E++ RLRE FL + + I D ++ E F E GI++F+E+LN ++ IH + Sbjct: 180 DSEMIISRLRETCFLINNLKINFFDTKNNIEKKFLCERGIESFIEFLNNDQEKIHDKVIT 239 Query: 243 FSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGY 302 F + I VE Q+ + QENI F NN+ GG+H GF++ + +N Y + Sbjct: 240 FKEKMQEIIVEFGFQYVNSQQENIISFVNNVKTNLGGSHENGFKSGFLKAINTYGQQNNL 299 Query: 303 SKKAKVSATGDDAREGLIAVVSVKVPDP--KFSSQTKDKLVSSEVKSAVEQQMNELLAEY 360 K K DA+ GL AV+S+++P+ +F QTK+KL + K+ E+ + L + Sbjct: 300 LK-TKQILEFSDAKVGLSAVLSLRIPESILEFVGQTKNKLSTILAKTVTEEVIFTNLMTF 358 Query: 361 LLENPTDAKIVVGKIIDAARAREAARRA--REMTRRKGALDLAGLPGKLADCQERDPALS 418 N A ++ I++ R+ ++ + T + + L GKL + Sbjct: 359 FALNKEVASKIINFILETYTQRQKSKLSIIESKTSKSITKEKRILSGKLTPANSKKAMNR 418 Query: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 EL+LVEG+SAGGSAK RNR+ QAILPLKGKI+N +K R +L ++E+ +I+ALG GI Sbjct: 419 ELFLVEGESAGGSAKLARNREFQAILPLKGKIVNAQKTRLIDLLKNEEIIAIISALGTGI 478 Query: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKV- 537 G++ +N L Y IIIMTDAD DG+HI+ L+LTF + M ++E+G VYIAQPPLY++ Sbjct: 479 GQN-FNLKNLNYGKIIIMTDADNDGAHIQILILTFLFLHMRPLIEKGFVYIAQPPLYRIS 537 Query: 538 KKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRM 597 +KG+++ YI D+E ++Y + + + L Q ++ Sbjct: 538 EKGRKDIYIWDEEKFEKYIKN--STNLQIQRYKGLGEMNANQL---------WQTTMDPE 586 Query: 598 ERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDV 651 R K +++ + + + + + + +++ K + Sbjct: 587 RRTLEKVLIENYPKVEKNFQILMGERADLRKSWIEKNVNFSLEDKFIENLKETI 640 Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats. Identities = 53/262 (20%), Positives = 99/262 (37%), Gaps = 17/262 (6%) Query: 536 KVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMIN 595 ++ K + I + + + L S A+ E + K+ Sbjct: 377 YTQRQKSKLSIIESKTSKSITKEKRILSGKLTPANSKKAMNRELFLVEGESAGGSAKLAR 436 Query: 596 RMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNA 655 E + + +++ R ++ L +E + N Sbjct: 437 NREFQAILPLKGKIVNAQKT------------RLIDLLKNEEIIAIISALGTGIGQNFNL 484 Query: 656 EQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGER--R 713 + + I+ + D + I + + L EK + + E+ + Sbjct: 485 KNLNYGKIIIMTDADNDGAHIQI--LILTFLFLHMRPLIEKGFVYIAQPPLYRISEKGRK 542 Query: 714 QPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAA 773 E+ + +K S L IQRYKGLGEMN QLW+TTMDPE R + +V +++ Sbjct: 543 DIYIWDEEKFEKYIKNSTN-LQIQRYKGLGEMNANQLWQTTMDPERRTLEKVLIENYPKV 601 Query: 774 DQLFTTLMGDAVEPRRAFIEEN 795 ++ F LMG+ + R+++IE+N Sbjct: 602 EKNFQILMGERADLRKSWIEKN 623 >UniRef50_D0RNK2 DNA topoisomerase IV, B subunit n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RNK2_9RICK Length = 646 Score = 527 bits (1356), Expect = e-148, Method: Composition-based stats. Identities = 227/638 (35%), Positives = 343/638 (53%), Gaps = 21/638 (3%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 +S +Y + I+VL+GL VRKRPGMYIG TD+ T HH+ E++DN+IDEA+AG+ KEI+ Sbjct: 3 ISKTYSAKDIEVLEGLAPVRKRPGMYIGGTDE-TAYHHLANEILDNSIDEAVAGYAKEIV 61 Query: 61 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 + + N++ + DDGRGIP HP++ +A EV+MT LH+GGKF+D+ YK S GLHGVG+ Sbjct: 62 IKLVNKNTIIISDDGRGIPIDKHPKKKKTALEVVMTTLHSGGKFNDSVYKSSAGLHGVGL 121 Query: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNV 179 SVVNALS KL + + + KI+ Q Y G L G+ + K GT + F P E F Sbjct: 122 SVVNALSSKLNIQVTKSSKIYSQDYSKGKILNKLKTKGKNKIKNGTQITFSPDPEIFGKD 181 Query: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRD--------GKEDHFHYEGGIKAFVEYLNK 231 F+ E + + + ++L G+ I +D ++ + G++ F++ Sbjct: 182 VNFKPEKIYELAKNKAYLQKGIKISWECNKDLLNRKSSVPSKETLLFSKGLEDFLKNEIN 241 Query: 232 NKTPIHPNIFYFST--EKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 +H + + S E +E ALQ+N + F N + +GGTH AGFR+ + Sbjct: 242 QNNVLHEKVSFQSGNLEDKKGKIEFALQFNKEKIKYNKAFCNTVYNMNGGTHDAGFRSGI 301 Query: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 +++ Y + K AT DD + ++SV + +P+F QTK KL S+ V+ Sbjct: 302 AKSIRKYAKNKN--NKIVSKATQDDIFDQAAYIISVYISNPEFEGQTKHKLSSNFVQKYC 359 Query: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 + + E+L N AK ++ + + R + + R+ A LPGKL+D Sbjct: 360 DSFASSAFDEWLNRNSKAAKNILNVLEEKIREKNIYDL-NQNVERQSAFRKIRLPGKLSD 418 Query: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 C +EL++VEGDSAGGSAKQ R+R QAILPL+GKILNV+ + K+L++ E+ Sbjct: 419 CTSDKTEGTELFIVEGDSAGGSAKQARDRTTQAILPLRGKILNVKSSNAAKILANSEINN 478 Query: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 L+ ALGCG G++ + LRY IIIMTDADVDG HI TLLLTFF +MP+++ GH+Y+ Sbjct: 479 LLQALGCGRGKNY-SKKDLRYEKIIIMTDADVDGDHISTLLLTFFISEMPQLILDGHLYL 537 Query: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNA 589 A PPLYK+ + Y D+ ++ + S GE + + E Sbjct: 538 AVPPLYKLNISGKSTYAIDESEKNKLLKDNKKAKIEI----SRFKGLGEMMPAQLKETTM 593 Query: 590 TQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVT 627 + ++ P K + L + + Sbjct: 594 NIETRKLIKVVLPVQKPK-MKKTNKLVSDLMGKNAELR 630 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 41/178 (23%), Positives = 70/178 (39%), Gaps = 4/178 (2%) Query: 631 NALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRI 690 L + + + + + +E I+ + VD D+ Sbjct: 469 KILANSEINNLLQALGCGRGKNYSKKDLRYEKIIIMTDADVDGDHISTLLLTFFISEMPQ 528 Query: 691 CTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQL 750 L L + + + + L + + I R+KGLGEM P QL Sbjct: 529 LILDGHLYLAVPPLYKLNISGKSTYAIDESEKNKLLKDNKKAKIEISRFKGLGEMMPAQL 588 Query: 751 WETTMDPESRRMLRVTV----KDAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 ETTM+ E+R++++V + ++L + LMG E R FI ENA K+ ++DI Sbjct: 589 KETTMNIETRKLIKVVLPVQKPKMKKTNKLVSDLMGKNAELRLKFISENANKSLSLDI 646 >UniRef50_Q9FAX1 DNA gyrase subunit B (Fragment) n=60 Tax=Bacteria RepID=GYRB_FLEEL Length = 478 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 246/479 (51%), Positives = 327/479 (68%), Gaps = 11/479 (2%) Query: 105 DDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTG 164 D ++YKVSGGLHGVGVS VNALS L + REGK+ +Q Y G PQ + V G++++TG Sbjct: 1 DKDTYKVSGGLHGVGVSCVNALSSLLVATVHREGKVFQQKYSTGNPQGAVEVVGQSDRTG 60 Query: 165 TMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE------DHFHY 218 T + F P F TE++YE ++KRLRELS+LN G+ + L D R+ E + F Sbjct: 61 TTIYFEPDATIFA-TTEYKYETVSKRLRELSYLNKGIRLTLTDLRETDEQGRHLYEEFFS 119 Query: 219 EGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDG 278 EGG+K FVE+L+ + P+ P + I VEVAL +N+ + EN++ + NNI +G Sbjct: 120 EGGLKEFVEHLDSTRQPLLPAPIHVEKTDGDIPVEVALIYNNSYSENVFSYVNNINTHEG 179 Query: 279 GTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKD 338 GTH++GFR A+TRTL +Y DK G +KAKV TGDD REGL AV+S+KV +P+F QTK Sbjct: 180 GTHVSGFRRALTRTLKSYADKSGMLEKAKVEITGDDFREGLTAVISIKVAEPQFEGQTKT 239 Query: 339 KLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGAL 398 KL +S+ AV+ ++E+L YL ENP +AK+++ K+I AA+AR+AAR+AREM +RK + Sbjct: 240 KLGNSDAIGAVDNAVSEILGYYLEENPREAKLIIQKVILAAQARQAARKAREMVQRKNVM 299 Query: 399 DLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARF 458 LPGKLADC + +P ELYLVEGDSAGGSAKQGR+R QAILPL+GKILNVEKA+ Sbjct: 300 GGTSLPGKLADCSDTNPERCELYLVEGDSAGGSAKQGRDRSFQAILPLRGKILNVEKAQE 359 Query: 459 DKMLSSQEVATLITALGCGIGRDEY----NPDKLRYHSIIIMTDADVDGSHIRTLLLTFF 514 K+ ++E+ +ITA+G G +E N KLRYH IIIMTDADVDGSHIRTL+LTFF Sbjct: 360 YKIYDNEEIKNMITAMGVTFGTEEDSKALNLTKLRYHKIIIMTDADVDGSHIRTLILTFF 419 Query: 515 YRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAP 573 +R M E++E+G++Y+A PPLY VKKGK+E+Y D D IA +G Sbjct: 420 FRYMRELIEQGYLYVALPPLYIVKKGKEERYAWSDAERDAIIREIAPEGKEDSVGIQRY 478 >UniRef50_A7I8U0 DNA gyrase subunit B n=1 Tax=Candidatus Methanoregula boonei 6A8 RepID=A7I8U0_METB6 Length = 708 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 210/481 (43%), Positives = 310/481 (64%), Gaps = 14/481 (2%) Query: 160 TEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYE 219 + TGT + F P F T F+Y++LA RLREL+FLN+G++I + D+R G + Y Sbjct: 233 NKLTGTRIHFVPDASIF-ETTTFDYDVLAHRLRELAFLNAGLTIIITDERTGDSATYCYA 291 Query: 220 GGIKAFVEYLNKNKTPIHPNIFYFSTEK--DGIGVEVALQWNDGFQENIYCFTNNIPQRD 277 GG+ FV+YLN+ +HPN Y + + + + +EVA+Q+ G+ E +Y + N++ R+ Sbjct: 292 GGLSEFVKYLNEGNEVLHPNPIYITKKDAENKLDLEVAMQYTTGYDEKLYTYVNSVNTRE 351 Query: 278 GGTHLAGFRAAMTRTLNAYMDKEGYSKKA-KVSATGDDAREGLIAVVSVKVPDPKFSSQT 336 GGTHL GFR+A+TR +N + G K+ +V+ G+D REGL +VVSVK+ +P+F QT Sbjct: 352 GGTHLEGFRSAITRGINVVAKRNGIIKENAQVTLRGEDVREGLTSVVSVKMANPQFEGQT 411 Query: 337 KDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKG 396 K +L +S VK V+ + L EY ENP KI+V K + AA+AREAAR AR++ RRK Sbjct: 412 KMRLGNSSVKGIVDSLVYAALTEYFDENPGVLKIIVEKALSAAKAREAARNARDLARRKS 471 Query: 397 ALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 456 +L+ AGLPGKL+DC ERDPA SE+Y+VEGDSAGGSAKQGR+RK QAILPL+GKILNVEKA Sbjct: 472 SLESAGLPGKLSDCSERDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKA 531 Query: 457 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYR 516 ++L + E+ TLI A+G GIG ++P++ RYH I+IMTDADVDG+HIRTLLLTFFYR Sbjct: 532 GEHQILKNAEIQTLINAIGTGIGEK-FDPERARYHRIVIMTDADVDGAHIRTLLLTFFYR 590 Query: 517 QMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALA 576 M +++E G+VYIAQPPL+++ KGK+E+Y+ + M + ++ G ++ + Sbjct: 591 YMRKLIELGYVYIAQPPLFRIAKGKEEKYVYKEAEMQKVSAAMGDKGVSIQRYKGLGEMN 650 Query: 577 GEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSE 636 + L ++ R + K +++ + + + + + + ++ Sbjct: 651 AQQL---------WDTTMDPENRIFLKVSIEDAYEADEMFKTLMGKDVEIRKNFIMRHAK 701 Query: 637 L 637 Sbjct: 702 E 702 Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats. Identities = 90/160 (56%), Positives = 112/160 (70%), Gaps = 1/160 (0%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 M+++YD+S I VL+GL VR+RP MYIG TD GLHH+V+EVVDN+IDEALAG C I Sbjct: 1 MTDTYDASHITVLEGLQPVRERPAMYIGSTDT-RGLHHLVYEVVDNSIDEALAGFCNRIC 59 Query: 61 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 V I+ D S+ V+D+GRGIP + SA EV++TVLHAGGKFD +Y+VSGGLHGVGV Sbjct: 60 VVINKDGSLMVEDNGRGIPVDTMEKNHKSALEVVLTVLHAGGKFDKETYQVSGGLHGVGV 119 Query: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGET 160 SVVNALS L + R+G I+ + G PL ET Sbjct: 120 SVVNALSNWLSARVYRDGNIYEMRFSQGKTTLPLTTREET 159 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 55/184 (29%), Positives = 85/184 (46%), Gaps = 4/184 (2%) Query: 623 EQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFI 682 L + + + E+ + IV + VD + + Sbjct: 527 NVEKAGEHQILKNAEIQTLINAIGTGIGEKFDPERARYHRIVIMTDADVDGAHI--RTLL 584 Query: 683 TGGEYRRICTLGEKLRGLLEEDAFIE--RGERRQPVASFEQALDWLVKESRRGLSIQRYK 740 YR + L E + + +G+ + V + +G+SIQRYK Sbjct: 585 LTFFYRYMRKLIELGYVYIAQPPLFRIAKGKEEKYVYKEAEMQKVSAAMGDKGVSIQRYK 644 Query: 741 GLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAA 800 GLGEMN +QLW+TTMDPE+R L+V+++DA AD++F TLMG VE R+ FI +A + Sbjct: 645 GLGEMNAQQLWDTTMDPENRIFLKVSIEDAYEADEMFKTLMGKDVEIRKNFIMRHAKEVT 704 Query: 801 NIDI 804 N+DI Sbjct: 705 NLDI 708 >UniRef50_Q02880 DNA topoisomerase 2-beta n=175 Tax=Eukaryota RepID=TOP2B_HUMAN Length = 1626 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 136/696 (19%), Positives = 256/696 (36%), Gaps = 61/696 (8%) Query: 6 DSSSIKVLKGLDAVRKRPGMYIGDTDD---------------------GTGLHHMVFEVV 44 + L+ + RP YIG + GL+ + E++ Sbjct: 51 VERVYQKKTQLEHILLRPDTYIGSVEPLTQFMWVYDEDVGMNCREVTFVPGLYKIFDEIL 110 Query: 45 DNAIDEALAGH-CKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGG 102 NA D I V+I + N +S+ ++G+GIP H E V +I L Sbjct: 111 VNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIFGQLLTSS 170 Query: 103 KFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIH--RQIYEHGVPQAPLAVTGET 160 +DD+ KV+GG +G G + N S K + + H +Q + + + + A Sbjct: 171 NYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHF 230 Query: 161 E-KTGTMVRFWPSLETFT--NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFH 217 + + T + F P L F + + ++ +R +L+ GV + K+ Sbjct: 231 DGEDYTCITFQPDLSKFKMEKLDKDIVALMTRRAYDLAGSCRGVKVMFNGKKLPV----- 285 Query: 218 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRD 277 G +++V+ K+K E +V L ++ F N+I Sbjct: 286 --NGFRSYVDLYVKDKLDETGVALKVIHELANERWDVCLTLSEK-GFQQISFVNSIATTK 342 Query: 278 GGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTK 337 GG H+ + L + K+ KA VS + + ++ + +P F SQTK Sbjct: 343 GGRHVDYVVDQVVGKLIEVVKKKN---KAGVSVKPFQVKNHIWVFINCLIENPTFDSQTK 399 Query: 338 DKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRARE-MTRRKG 396 + + + Q++E + +V I++ + + + ++ + + Sbjct: 400 ENMTLQPKSFGSKCQLSEKFFKAASNCG-----IVESILNWVKFKAQTQLNKKCSSVKYS 454 Query: 397 ALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRN---RKNQAILPLKGKILNV 453 + D + L L EGDSA A G R + PL+GKILNV Sbjct: 455 KIKGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNV 514 Query: 454 EKARFDKMLSSQEVATLITALGCGIGRDEYN---PDKLRYHSIIIMTDADVDGSHIRTLL 510 +A +++ + E+ +I +G + + LRY I+IMTD D DGSHI+ LL Sbjct: 515 REASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLL 574 Query: 511 LTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG-ATLHTN 569 + F + P +++ G + P+ K K KQE D+++ I + Sbjct: 575 INFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYY 634 Query: 570 ASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRW 629 + ++ ++ + + A+ L + + W Sbjct: 635 KGLGTSTAKEAKEYFADMERHRILFRYAGPEDDAAI--TLAFSKKKIDDR-------KEW 685 Query: 630 VNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVR 665 + + + + HG +F T + + + Sbjct: 686 LTNFMEDRRQRRLHGLPEQFLYGTATKHLTYNDFIN 721 >UniRef50_P08096 DNA topoisomerase 2 n=1 Tax=Schizosaccharomyces pombe RepID=TOP2_SCHPO Length = 1485 Score = 523 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 156/802 (19%), Positives = 304/802 (37%), Gaps = 77/802 (9%) Query: 8 SSIKVLKGLDAVRKRPGMYIGDTD----------------------DGTGLHHMVFEVVD 45 + + L + V +RP YIG + GL+ + E++ Sbjct: 76 TQYQRLTPREHVLRRPDTYIGSIEPTTSEMWVFDSEKNKLDYKAVTYVPGLYKIFDEIIV 135 Query: 46 NAIDEALAGH-CKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGK 103 NA D + + VT+ + N +S+ ++G+GIP IH +E + E+I L Sbjct: 136 NAADNKVRDPNMNTLKVTLDPEANVISIYNNGKGIPIEIHDKEKIYIPELIFGNLLTSSN 195 Query: 104 FDDNSYKVSGGLHGVGVSVVNALSQKLELV--IQREGKIHRQIYEHGVPQAPLAVTGETE 161 +DDN KV+GG +G G + N S + + + K ++Q + + + V + Sbjct: 196 YDDNQKKVTGGRNGYGAKLCNIFSTEFVVETADKERMKKYKQTWYDNMSRKSEPVITSLK 255 Query: 162 K--TGTMVRFWPSLETFT--NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFH 217 K T + F P L F + + I+ +R+ +++ + L ++R Sbjct: 256 KPDEYTKITFKPDLAKFGMDKIDDDMVSIIKRRIYDMAGTVRETKVYLNNERISI----- 310 Query: 218 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRD 277 G K +VE + T E +VA +DG Q F NNI Sbjct: 311 --SGFKKYVEMYLASDTKPDEEPPRVIYEHVNDRWDVAFAVSDG-QFKQVSFVNNISTIR 367 Query: 278 GGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTK 337 GGTH+ + ++ + KE K + + V+ ++ +P F SQTK Sbjct: 368 GGTHVNYVANKIVDAIDEVVKKEN----KKAPVKAFQIKNYVQVFVNCQIENPSFDSQTK 423 Query: 338 DKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGA 397 + L + + +++ + + ++ VV +++ A A+ + ++ + Sbjct: 424 ETLTTKVSAFGSQCTLSDKFLKAIKKS-----SVVEEVLKFATAKADQQLSKGDGGLRSR 478 Query: 398 LDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGR---NRKNQAILPLKGKILNVE 454 + ++ L L EGDSA A G R + PL+GK+LNV Sbjct: 479 ITGLTKLEDANKAGTKESHKCVLILTEGDSAKSLAVSGLSVVGRDYYGVFPLRGKLLNVR 538 Query: 455 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFF 514 +A ++L+++E+ + +G + + LRY ++IMTD D DGSHI+ L++ + Sbjct: 539 EASHSQILNNKEIQAIKKIMGFTHKKTYTDVKGLRYGHLMIMTDQDHDGSHIKGLIINYL 598 Query: 515 YRQMPEIVE-RGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALD-GATLHTNASA 572 P +++ G + P+ K +G Q Q + ++ + G + Sbjct: 599 ESSYPSLLQIPGFLIQFITPIIKCTRGNQVQAFYTLPEYEYWKEANNNGRGWKIKYYKGL 658 Query: 573 PALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNA 632 + ++ S+ + K + M+ + + + E+ + + V + Sbjct: 659 GTSDHDDMKSYFSDLDRHMKYFHAMQEKDAELI--EMAFAKKKAD--------VRKEWLR 708 Query: 633 LVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTH--GVDTDYPLDHEFITGGEYRRI 690 + Q D N E F +R+ VD P + + R + Sbjct: 709 TYRPGIYMDYTQPQIPIDDFINRELIQFSMADNIRSIPSVVDGLKPGQRKVVYYCFKRNL 768 Query: 691 CTLGE--KLRGLLEEDAFIERGE--RRQPVASFEQAL------DWLVKESRRGLSIQRYK 740 + +L G + + GE Q + + Q + L+ + G R + Sbjct: 769 VHETKVSRLAGYVASETAYHHGEVSMEQTIVNLAQNFVGSNNINLLMPNGQFGT---RSE 825 Query: 741 GLGEMNPEQLWETTMDPESRRM 762 G + + T + P +R + Sbjct: 826 GGKNASASRYLNTALSPLARVL 847 >UniRef50_P11388 DNA topoisomerase 2-alpha n=47 Tax=Eukaryota RepID=TOP2A_HUMAN Length = 1531 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 143/734 (19%), Positives = 267/734 (36%), Gaps = 64/734 (8%) Query: 6 DSSSIKVLKGLDAVRKRPGMYIGDTD---------------------DGTGLHHMVFEVV 44 + L+ + RP YIG + GL+ + E++ Sbjct: 30 VERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINYREVTFVPGLYKIFDEIL 89 Query: 45 DNAIDEALAGH-CKEIIVTIHADNS-VSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGG 102 NA D I VTI +N+ +S+ ++G+GIP H E + +I L Sbjct: 90 VNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSS 149 Query: 103 KFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRE--GKIHRQIYEHGVPQA-PLAVTGE 159 +DD+ KV+GG +G G + N S K + K+ +Q + + +A + + Sbjct: 150 NYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGEMELKPF 209 Query: 160 TEKTGTMVRFWPSLETFT--NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFH 217 + T + F P L F ++ + ++ +R +++ V + L + + Sbjct: 210 NGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGSTKDVKVFLNGNKLPVK---- 265 Query: 218 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRD 277 G +++V+ K+K N E+ EV L ++ F N+I Sbjct: 266 ---GFRSYVDMYLKDKLDETGNSLKVIHEQVNHRWEVCLTMSEK-GFQQISFVNSIATSK 321 Query: 278 GGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTK 337 GG H+ + L + K+ K V+ + + V+ + +P F SQTK Sbjct: 322 GGRHVDYVADQIVTKLVDVVKKKN---KGGVAVKAHQVKNHMWIFVNALIENPTFDSQTK 378 Query: 338 DKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGA 397 + + Q++E + + I+++ + ++ ++ A Sbjct: 379 ENMTLQPKSFGSTCQLSEKFIK---------AAIGCGIVESILNWVKFKAQVQLNKKCSA 429 Query: 398 LDLAGLPG-----KLADCQERDPALSELYLVEGDSAGGSAKQGRN---RKNQAILPLKGK 449 + + G D R+ L L EGDSA A G R + PL+GK Sbjct: 430 VKHNRIKGIPKLDDANDAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGK 489 Query: 450 ILNVEKARFDKMLSSQEVATLITALGCGIGRDEYN---PDKLRYHSIIIMTDADVDGSHI 506 ILNV +A +++ + E+ +I +G ++ + LRY I+IMTD D DGSHI Sbjct: 490 ILNVREASHKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHI 549 Query: 507 RTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATL 566 + LL+ F + P ++ + P+ KV K KQE ++++ S Sbjct: 550 KGLLINFIHHNWPSLLRHRFLEEFITPIVKVSKNKQEMAFYSLPEFEEWKSSTPNHKKWK 609 Query: 567 HTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTE--ADLSDEQ 624 + K ++ + A + + + + L++ Sbjct: 610 VKYYKGLGTSTSKEAKEYFADMKRHRIQFKYSGPEDDAAISLAFSKKQIDDRKEWLTNFM 669 Query: 625 TVTRWVNALVSELNDKEQHGSQW-KFDVHTNAEQNLFEPIVRVRTH--GVDTDYPLDHEF 681 R L + + + ++ N E LF R+ VD P + Sbjct: 670 EDRRQRKLLGLPEDYLYGQTTTYLTYNDFINKELILFSNSDNERSIPSMVDGLKPGQRKV 729 Query: 682 ITGGEYRRICTLGE 695 + R + Sbjct: 730 LFTCFKRNDKREVK 743 >UniRef50_UPI0000DA3D74 PREDICTED: similar to topoisomerase (DNA) II beta n=1 Tax=Rattus norvegicus RepID=UPI0000DA3D74 Length = 1445 Score = 521 bits (1342), Expect = e-146, Method: Composition-based stats. Identities = 136/696 (19%), Positives = 256/696 (36%), Gaps = 61/696 (8%) Query: 6 DSSSIKVLKGLDAVRKRPGMYIGDTDD---------------------GTGLHHMVFEVV 44 + L+ + RP YIG + GL+ + E++ Sbjct: 39 VERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVGMNCREVTFVPGLYKIFDEIL 98 Query: 45 DNAIDEALAGH-CKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGG 102 NA D I V+I + N +S+ ++G+GIP H E V +I L Sbjct: 99 VNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIFGQLLTSS 158 Query: 103 KFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIH--RQIYEHGVPQAPLAVTGET 160 +DD+ KV+GG +G G + N S K + + H +Q + + + + A Sbjct: 159 NYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHF 218 Query: 161 E-KTGTMVRFWPSLETFT--NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFH 217 + + T + F P L F + + ++ +R +L+ GV + K+ Sbjct: 219 DGEDYTCITFQPDLAKFKMEKLDKDIVALMTRRAYDLAGSCKGVKVMFNGKKLPV----- 273 Query: 218 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRD 277 G +++V+ K+K E +V L ++ F N+I Sbjct: 274 --NGFRSYVDLYVKDKLDETGVALKVIHELANERWDVCLTLSEK-GFQQISFVNSIATTK 330 Query: 278 GGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTK 337 GG H+ + L + K+ KA VS + + ++ + +P F SQTK Sbjct: 331 GGRHVDYVVDQVVGKLIEVVKKKN---KAGVSVKPFQVKNHIWVFINCLIENPTFDSQTK 387 Query: 338 DKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRARE-MTRRKG 396 + + + Q++E + +V I++ + + + ++ + + Sbjct: 388 ENMTLQPKSFGSKCQLSEKFFKAASNCG-----IVESILNWVKFKAQTQLNKKCSSVKYS 442 Query: 397 ALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRN---RKNQAILPLKGKILNV 453 + D + L L EGDSA A G R + PL+GKILNV Sbjct: 443 KIKGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNV 502 Query: 454 EKARFDKMLSSQEVATLITALGCGIGRDEYN---PDKLRYHSIIIMTDADVDGSHIRTLL 510 +A +++ + E+ +I +G + + LRY I+IMTD D DGSHI+ LL Sbjct: 503 REASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLL 562 Query: 511 LTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG-ATLHTN 569 + F + P +++ G + P+ K K KQE D+++ I + Sbjct: 563 INFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYY 622 Query: 570 ASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRW 629 + ++ ++ + + A+ L + + W Sbjct: 623 KGLGTSTAKEAKEYFADMERHRILFRYAGPEDDAAI--TLAFSKKKIDDR-------KEW 673 Query: 630 VNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVR 665 + + + + HG +F T + + + Sbjct: 674 LTNFMEDRRQRRLHGLPEQFLYGTATKHLTYNDFIN 709 >UniRef50_B3R5I8 DNA topoisomerase IV, subunit B n=15 Tax=Proteobacteria RepID=B3R5I8_CUPTR Length = 663 Score = 520 bits (1339), Expect = e-146, Method: Composition-based stats. Identities = 232/671 (34%), Positives = 341/671 (50%), Gaps = 43/671 (6%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 ++ Y SSI+VLKGL+ V++RPGMY TD+ H+V EV+DNA DEAL GH EI+V Sbjct: 5 TSQYSESSIRVLKGLEPVKQRPGMY-TRTDNP---LHIVQEVIDNASDEALGGHGSEILV 60 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDN---SYKVSGGLHGV 118 T+H D S+SV+DDGRGIP GIHPEEGV E++ T LHAGGKFD +Y SGGLHGV Sbjct: 61 TLHRDGSLSVEDDGRGIPVGIHPEEGVPVVEIVFTRLHAGGKFDKGKGGAYAFSGGLHGV 120 Query: 119 GVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPL---AVTGETEKTGTMVRFWPSLET 175 GVSV NALS +L++ + R+G + G PL + +K GT V+ WP Sbjct: 121 GVSVTNALSTQLDVTVWRDGMCSTLTFSGGDVTVPLASRKLERGEKKNGTRVQVWPDARY 180 Query: 176 FTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTP 235 F + L + LR + L GV + L ++ G+ + Y+ G+K ++ + Sbjct: 181 F-DSAAIPLAELQRLLRSKAVLLPGVKVTLVTEKTGERQTWQYDQGLKGYLVEALAQGSG 239 Query: 236 IHPNIFYFSTEK--------------DGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTH 281 I F E DG G + W + + N IP GGTH Sbjct: 240 AELVIPMFEGEHFADPDANPGEEGFADGEGASWVVAWTEDGAPVRESYVNLIPTPAGGTH 299 Query: 282 LAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLV 341 +G R + + + ++++ K V +D V+S KV DP+F Q K++L Sbjct: 300 ESGLREGLFQAVKSFIEMHALQPKG-VKLMSEDVFARASFVLSAKVLDPQFQGQIKERLN 358 Query: 342 SSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLA 401 S + V L +L + K + +I A+AR RA + +K +A Sbjct: 359 SRDAVRLVSTFSRPALELWLNHHVEYGKKLAELVIRQAQART---RAAQKVEKKKGSGVA 415 Query: 402 GLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 461 LPGKL DC+ D +EL+LVEGDSAGGSAK GR+++ QAILPL+GK+LN + D++ Sbjct: 416 VLPGKLTDCESTDVTRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNTWETERDRL 475 Query: 462 LSSQEVATLITALGCGIG--RDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMP 519 ++ EV + A+G DE + LRY I I++DADVDG+HI+ LLLT F+R P Sbjct: 476 FANNEVHDIAVAIGVDPHGANDEPDLSNLRYGKICILSDADVDGAHIQVLLLTLFFRHFP 535 Query: 520 EIVERGHVYIAQPPLYKV------KKGKQEQYIKDDEAMDQYQISIALDGATLH-TNASA 572 +++E G+VY+A+PPL++V KK Q+ Y D+ ++ Q + DG + S Sbjct: 536 KLIETGNVYVARPPLFRVDAPARGKKPAQKLYALDEGELEAIQDKLLKDGVKENSWQISR 595 Query: 573 PALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTR--WV 630 GE + + E + + +L + + + R W+ Sbjct: 596 FKGLGEMSAEQLWETTMNPDTRRLLPVTLGEY---DLPQTVEMMNMLMGKGEAAQRRSWL 652 Query: 631 NALVSELNDKE 641 +E+ Sbjct: 653 EEKGNEVEADI 663 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 51/304 (16%), Positives = 95/304 (31%), Gaps = 32/304 (10%) Query: 527 VYIAQPPLYKVKKGKQEQYIKDDEA---MDQYQISIALDGATLHTNASAPALAGEALEKL 583 V P ++ +Y K + A + L G+ + Sbjct: 366 VSTFSRPALELWLNHHVEYGKKLAELVIRQAQARTRAAQKVEKKKGSGVAVLPGKLTDCE 425 Query: 584 VSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQH 643 ++ + + + A + + + W + E H Sbjct: 426 STDVTRNELFLVEGDSAGGSAK---MGRDKEFQAILPLRGKVLNTWETERDRLFANNEVH 482 Query: 644 GSQW-------KFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEK 696 + + + I + VD + + +R L E Sbjct: 483 DIAVAIGVDPHGANDEPDLSNLRYGKICILSDADVDGAHIQ--VLLLTLFFRHFPKLIET 540 Query: 697 LRGLLEEDAFI--------ERGERRQPVASFEQALDWLVKESRRGLS-----IQRYKGLG 743 + ++ ++ + K + G+ I R+KGLG Sbjct: 541 GNVYVARPPLFRVDAPARGKKPAQKLYALDEGELEAIQDKLLKDGVKENSWQISRFKGLG 600 Query: 744 EMNPEQLWETTMDPESRRMLRVTVK--DAIAADQLFTTLMGD-AVEPRRAFIEENALKAA 800 EM+ EQLWETTM+P++RR+L VT+ D ++ LMG RR+++EE + Sbjct: 601 EMSAEQLWETTMNPDTRRLLPVTLGEYDLPQTVEMMNMLMGKGEAAQRRSWLEEKGNEVE 660 Query: 801 NIDI 804 DI Sbjct: 661 A-DI 663 >UniRef50_Q5KSK9 DNA topoisomerase 2 n=5 Tax=Basidiomycota RepID=Q5KSK9_COPCI Length = 1572 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 140/702 (19%), Positives = 268/702 (38%), Gaps = 53/702 (7%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDG----------------------TGLHHM 39 S + L L+ + KRP YIG + G + Sbjct: 95 KKKSTSEMYQKLTQLEHILKRPDSYIGSIETITTPMWTYDSETKRMVHREVKYVPGFFKI 154 Query: 40 VFEVVDNAIDEALAGH-CKEIIVTIH-ADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTV 97 V E++ NA D + + VTI + ++SV ++GRGIP IH +E + E+I Sbjct: 155 VDEILVNAADNKINDPSMDTLKVTIDVEEGTISVYNNGRGIPIEIHSKEKMYIPEMIFGH 214 Query: 98 LHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELV--IQREGKIHRQIYEHGVPQAPLA 155 L +DD+ K++GG +G G + N S + + + + ++Q + + + A Sbjct: 215 LLTSTNYDDDEKKLTGGRNGYGAKLANIYSLEFTVETADKNTSQKYKQTWTDNMSKCGKA 274 Query: 156 VTGETEK--TGTMVRFWPSLETFT--NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDG 211 + + T + F P L+ F ++ E +L +R+ +++ V + L D+R Sbjct: 275 KITKNTRGEEYTRITFRPDLKRFGMNSIDEDTVSLLKRRVFDMAGTVKDVKVFLNDERLK 334 Query: 212 KEDHFHYEGGIKAFVEYLNKNKTPIHPNI-FYFSTEKDGIGVEVALQWNDGFQENIYCFT 270 ++ Y + V+ K+ E+ E+A + F Sbjct: 335 IKNFKQYVEMYVSSVQEAAAEKSGGAAQPKQTVIHEQISDRWEIAYTLSTEGTFQHVSFA 394 Query: 271 NNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDP 330 N+I GGTH+ +++ L + K+ + R + V + +P Sbjct: 395 NSIATSKGGTHVNYIADQISKALVTSISKKN----KGATVKPAQIRNHMWLFVKSLIVNP 450 Query: 331 KFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRARE 390 F SQTK+ L K + +++ + + ++ +V +++ A+ + + R Sbjct: 451 TFDSQTKELLTLPSSKFGSKPTISDEFIKKVAKSG-----IVDNVLNWAKFKADQQMKRA 505 Query: 391 MTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRN---RKNQAILPLK 447 ++ L + R L L EGDSA A G R N + PL+ Sbjct: 506 DGTKRSRLLGLAKLSDANNAGTRHAQDCTLILTEGDSAKALAIAGLGVVGRDNFGVFPLR 565 Query: 448 GKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIR 507 GK+LNV +AR D+++ ++E+ + +G +D N LRY ++IMTD D DGSHI+ Sbjct: 566 GKLLNVREARHDQIMKNEEIQNIKKIMGLQHNKDYTNTSSLRYGRLMIMTDQDHDGSHIK 625 Query: 508 TLLLTFFYRQMPEIVERG-HVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATL 566 L++ F P +++ + P+ +VKKG + + +Q+ Sbjct: 626 GLIINFLDHFYPSLLKIPDFLVEFVTPIVRVKKGNKVKDFFTIPEYEQWLEETPDARKWE 685 Query: 567 HTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTV 626 + + ++ ++ME+ + + + A + Sbjct: 686 SKYYKGLGTSEDK---------DAREYFSKMEKHMIPFAPTQEGDRELIDLAFSKKKADE 736 Query: 627 TRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRT 668 + + + + N E LF VR+ Sbjct: 737 RKEWLRQFKPGTFLDHRLEEIPYSEFINKELILFSMADNVRS 778 >UniRef50_C1E5N4 DNA topoisomerase 2 n=1 Tax=Micromonas sp. RCC299 RepID=C1E5N4_9CHLO Length = 1459 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 147/730 (20%), Positives = 273/730 (37%), Gaps = 71/730 (9%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTDD----------------------GTGLHHMVFEVV 44 + L+ + RP Y+G + GL+ + E++ Sbjct: 55 EDIYQKKTQLEHILLRPDTYVGSCEKTEEKAWVYCKDTNKLVQRQMSFVPGLYKIFDEIL 114 Query: 45 DNAIDEALAGH-CKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGG 102 NA D + + V I + + V +DG GIP +H EEGV E+I L Sbjct: 115 VNATDNKVRDPSMVTLRVDIDQEAGCIRVYNDGNGIPVEMHKEEGVYVPELIFGHLLTSS 174 Query: 103 KFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQR--EGKIHRQIYEHGVPQA--PLAVTG 158 ++DN KV+GG +G G + N S + + + +RQ++++ + + P+ Sbjct: 175 NYNDNEKKVTGGRNGYGAKLANIFSTEFVVETCDGSRERRYRQVFKNNMGEKCEPVVTKC 234 Query: 159 ETEKTGTMVRFWPSLETF--TNVTEFEYEILAKRLRELSF-LNSGVSIRLRDKRDGKEDH 215 + T + F P L F T + + ++ KR+ + + + + L +R + Sbjct: 235 KPTDNWTCITFKPDLAKFNMTELEDDTVALMCKRVYDAAGNIGKNTKVFLNGERLKVK-- 292 Query: 216 FHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQ 275 G +V+ + + EK EV + +D F N I Sbjct: 293 -----GFSDYVDLYLEGRENAPK-----VYEKVNDRWEVCVTISDSGNFQQVSFVNGICT 342 Query: 276 RDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQ 335 GGTH+ + L + K+ S K + + L V+ + +P F SQ Sbjct: 343 MKGGTHVNQVADEVAGKLLEKIKKKEKSCK---NLKAAHVKNHLWVFVNALIENPAFDSQ 399 Query: 336 TKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRK 395 TK+ L + + + ++ + + ++ + +V +I+ A +++ + ++ Sbjct: 400 TKETLNTRASNFGSKYEASDKVIKQMMNSG-----IVEQILSWASFKQSKEMKKSDGKKA 454 Query: 396 GALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGR---NRKNQAILPLKGKILN 452 L D R+ L L EGDSA A G R + PL+GK+LN Sbjct: 455 TRLTGIPKLDDANDAGGRNSEHCTLILTEGDSAKALAVSGLSVVGRDRYGVFPLRGKLLN 514 Query: 453 VEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLT 512 V A D+++++ E+ + LG G + LRY I+IMTD D DGSHI+ LL+ Sbjct: 515 VRDASHDQIMNNAEINHIKQILGLRHGTTYESAKSLRYGHIMIMTDQDHDGSHIKGLLIN 574 Query: 513 FFYRQMPEIVE-RGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALD----GATLH 567 F + P +++ G + P+ K KGKQ + D ++ G + Sbjct: 575 FLHAHFPSLLKIPGFLVEFITPIIKATKGKQSKVFYTLPEYDNWKEHAEETGTGRGWNIK 634 Query: 568 TNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVT 627 + ++ + + +K L ++ + E Sbjct: 635 YYKGLGTSTAKEAKEYFAALDHHKKTFAW--TTDGDGNLIDMAFSKKRVED--------R 684 Query: 628 RWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTH--GVDTDYPLDHEFITGG 685 + + G ++D N E LF +R+ VD P + + Sbjct: 685 KAWLNAYEPGTYLDMTGDDVRYDDFINKELILFSRADLMRSIPSVVDGFKPSQRKVLFSC 744 Query: 686 EYRRICTLGE 695 R++ + + Sbjct: 745 FKRKLKSDIK 754 >UniRef50_Q9FAX2 DNA gyrase subunit B (Fragment) n=166 Tax=root RepID=GYRB_FLEJA Length = 481 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 244/473 (51%), Positives = 315/473 (66%), Gaps = 15/473 (3%) Query: 105 DDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTG 164 D N+YKVSGGLHGVGVS VNALS L + + REGKI Q Y GVPQ + G T TG Sbjct: 1 DKNTYKVSGGLHGVGVSCVNALSTVLHVTVHREGKIFEQEYHRGVPQYAVREIGATTDTG 60 Query: 165 TMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE------DHFHY 218 T F P E FT T + EILA RLREL++LN + I L D+R+ E + F+ Sbjct: 61 TTTHFKPDGEIFTE-TSYNREILAGRLRELAYLNRKIRITLTDEREKDEQGNVLSEPFYS 119 Query: 219 EGGIKAFVEYLNKN--KTPIHPNIFYFSTEK--DGIGVEVALQWNDGFQENIYCFTNNIP 274 EGGI FV+ L++N + + P + + VEV+LQ+ND F ENI+ + NNI Sbjct: 120 EGGIMEFVQMLDRNGRRNSLLPAPIFIEAHDAPSNVAVEVSLQYNDSFSENIFSYVNNIN 179 Query: 275 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 334 +GGTH+AGFR A+TR Y D+ +K+K+ TGDD REGL A+VSVKVP+P+F Sbjct: 180 TIEGGTHVAGFRRAITRVFKTYGDRNKLFEKSKIEVTGDDFREGLSAIVSVKVPEPQFEG 239 Query: 335 QTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRR 394 QTK KL +S+V V+ + ++L YL E+P +A+ V+ K++ AA+AREAAR+AR++ +R Sbjct: 240 QTKTKLGNSDVMGVVDSAVADVLNAYLEEHPKEARTVINKVVLAAQAREAARKARQLVQR 299 Query: 395 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 454 K L +GLPGKLADC E DP ELYLVEGDSAGG+AKQGRNR QAILPL+GKILNVE Sbjct: 300 KSVLTGSGLPGKLADCSENDPEKCELYLVEGDSAGGTAKQGRNRAFQAILPLRGKILNVE 359 Query: 455 KARFDKMLSSQEVATLITALGCGIGRDEYN----PDKLRYHSIIIMTDADVDGSHIRTLL 510 KA K+ ++E+ + TALG IG +E + KLRYH +IIMTDADVDGSHI TL+ Sbjct: 360 KAMEHKIYENEEIKNIFTALGVTIGTEEDDKALNLSKLRYHKLIIMTDADVDGSHIATLI 419 Query: 511 LTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563 LTF +R M +VE+G+VYIAQPPLY VKKGK++ Y +E ++A Sbjct: 420 LTFVFRYMKALVEQGYVYIAQPPLYLVKKGKEQIYAWTEEQRKAAVATLAGGK 472 >UniRef50_O24308 DNA topoisomerase 2 n=3 Tax=fabids RepID=TOP2_PEA Length = 1462 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 137/701 (19%), Positives = 260/701 (37%), Gaps = 70/701 (9%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDG--------------------TGLHHMV 40 + + + L+ + RP Y+G + GL+ + Sbjct: 14 IPSKTIEEMYQKKTQLEHILLRPDTYVGSIEKHTQNLWVYENDEMVHRAVSYVPGLYKIF 73 Query: 41 FEVVDNAIDEALAGH-CKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVL 98 E++ NA D + VTI + N+VSV ++G G+P IH EE V E+I L Sbjct: 74 DEILVNAADNKQRDPSMDSLKVTIDPEANTVSVYNNGDGVPVEIHQEEKVYVPELIFGHL 133 Query: 99 HAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELV--IQREGKIHRQIYEHGVPQA--PL 154 +DDN K +GG +G G + N S + + R K ++Q++ + + P+ Sbjct: 134 LTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGRRLKKYKQVFSNNMGTKCEPV 193 Query: 155 AVTGETEKTGTMVRFWPSLETFTN--VTEFEYEILAKRLRELSFLN-SGVSIRLRDKRDG 211 + + T V F P LE F + E ++ KR+ +++ V + L Sbjct: 194 ITKCKASENWTKVTFKPDLEKFKMAYLEEDVVALMKKRVLDMAGCFGKTVKVELNGTLIR 253 Query: 212 KEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTN 271 + + + + K P K G E+ + +DG Q F N Sbjct: 254 FKS-------FRDYADLFLKCAEKSKPMPLPRIHAKVGDRWEICISLSDG-QFQQVSFVN 305 Query: 272 NIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPK 331 +I GGTH+ +T + ++K KK + + L V+ + +P Sbjct: 306 SIATIKGGTHVDYITNQITTYIMNKVNK----KKKDANVKAHTVKNHLWVFVNSLIDNPA 361 Query: 332 FSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREM 391 F SQTK+ L + + + + E + + + ++ I+D + ++++++ Sbjct: 362 FDSQTKETLTTRQASFGSKCDVPESMLKDVEKS---------GIVDTLLSWADFKQSKDL 412 Query: 392 TRRKGALDLAGLPGKLADCQE---RDPALSELYLVEGDSAGGSAKQGR---NRKNQAILP 445 + G K D E R+ L L EGDSA A G R + + P Sbjct: 413 KKTDGTKTQRLRGCKAEDANEAGGRNSEKCTLILTEGDSAKALAMAGLSVVGRDHYGVFP 472 Query: 446 LKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSH 505 L+GK+LNV +A +++ ++E+ + LG ++ N LRY ++IM D D DGSH Sbjct: 473 LRGKLLNVREASSKQIMDNEEIQNIKKILGLQQNKEYTNVKSLRYGHLMIMADQDHDGSH 532 Query: 506 IRTLLLTFFYRQMPEIVERG-HVYIAQPPLYKVKKGKQEQ-YIKDDEAMDQYQISIALD- 562 I+ LL+ F + P +++ + P+ + + + ++ + Sbjct: 533 IKGLLINFIHSFWPSLLKVPSFLVEFTTPVIRASHPNKTITSFYSMPEYEAWKERLGNSA 592 Query: 563 -GATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLS 621 + + + S+ + R + + + + A Sbjct: 593 TSWKIKYYKGLGTSTPQEGREYFSD----------LGRHRKDFIWDDELDGNAIELAFSK 642 Query: 622 DEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEP 662 + + ++ + N E LF Sbjct: 643 KKAEGRKIWMRNFEPGTCRDHEAKLINYKDFVNKELILFSR 683 >UniRef50_Q8SS63 DNA topoisomerase 2 n=1 Tax=Encephalitozoon cuniculi RepID=Q8SS63_ENCCU Length = 1144 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 155/745 (20%), Positives = 283/745 (37%), Gaps = 74/745 (9%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTD----------------------DGTGLHHMVFEVV 44 + + ++ + RP YIG + GL+ + E++ Sbjct: 5 EETYQKKTPVEHILLRPDTYIGSVEKEAQEMYVWDEENGRMVYKSIEYVPGLYKIFDEII 64 Query: 45 DNAIDEALAGH-CKEIIVTIHADN-SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGG 102 NA D + I V+I + +SV ++G+GIP IH EE V E+I L Sbjct: 65 VNAADNKIRDPKMDVIKVSIDPEGNEISVYNNGKGIPVRIHKEENVYVPELIFGNLLTSS 124 Query: 103 KFDDNSYKVSGGLHGVGVSVVNALSQKLELV--IQREGKIHRQIYEHGVPQAP-LAVTGE 159 ++D+ KV+GG +G G + N S++ + K +RQ Y + ++ Sbjct: 125 NYNDDEKKVTGGRNGYGAKLCNIFSKEFVVETADCEVKKYYRQRYRDNMGVKEDPEISRY 184 Query: 160 TEKTGTMVRFWPSLETFTNV--TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFH 217 T+ T + F P L F + +L KR+ +L+ + V I L +KR + Sbjct: 185 TKGDFTKITFKPDLRRFKMTRLDDDIVALLRKRVYDLAGIVKDVKIFLNEKRIEVK---- 240 Query: 218 YEGGIKAFVE-YLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQR 276 G K +V+ Y+ + +H I E+AL ++ Q F N I Sbjct: 241 ---GFKEYVKLYIPPGASVVHQVI--------NDRWELALTTSEE-QFQQVSFVNGICTT 288 Query: 277 DGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQT 336 GGTH+ + L + K K+ +S R + ++ + +P F SQT Sbjct: 289 KGGTHVNHVVERIVDPLVEAIQK----KEKGLSVRPFQVRSCMFVFINSLIDNPAFDSQT 344 Query: 337 KDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKG 396 K+ L + + + +++N +V KI A+A+++ + + + Sbjct: 345 KENLTLRASAFGSKCEPMGDFVKSIIKN----TPIVQKITSFAKAKQSQQLKKTDGAKTS 400 Query: 397 ALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGR---NRKNQAILPLKGKILNV 453 L L L EGDSA A G R + PL+GK+LNV Sbjct: 401 RLSGIPKLEDANFAGTSRSKDCTLILTEGDSAKTLAVAGLSVVGRDAYGVFPLRGKLLNV 460 Query: 454 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTF 513 +A +++ + E++++ LG + + LRY ++IMTD D DGSHI+ L++ F Sbjct: 461 REASHKQIMENAEISSIKKILGLQHNKVYEDVSSLRYGHVMIMTDQDHDGSHIKGLIINF 520 Query: 514 FYRQMPEIVE-RGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASA 572 P +++ G + P+ + K Q + ++++ + DG + Sbjct: 521 LDHFYPSLLKIPGFLQEFITPIIRATKKGQVRDFFTLPEYEEFKKN--EDGWNIKYYKGL 578 Query: 573 PALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNA 632 ++ S K + + + +L + + + Sbjct: 579 GTSTSADAKQYFSNLPVHVKSFTPLAAEDKELI--DLAFNKKKAD--------ARKTWLL 628 Query: 633 LVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTH--GVDTDYPLDHEFITGGEYRRI 690 + +Q +Q N E LF +R+ VD P + I R + Sbjct: 629 NFAPGTFLDQSQTQISISDFVNKELILFSMADNIRSIPSLVDGLKPGQRKVIFSCFKRNL 688 Query: 691 CTLGE--KLRGLLEEDAFIERGERR 713 + + +L G + E + GE+ Sbjct: 689 RSEIKVAQLVGYVSEQSAYHHGEQS 713 >UniRef50_B6K4K4 DNA topoisomerase 2 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K4K4_SCHJY Length = 1499 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 147/747 (19%), Positives = 295/747 (39%), Gaps = 66/747 (8%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTDD----------------------GTGLHHMVFEVV 44 S + + + V +RP YIG + GL+ + E++ Sbjct: 71 SQQYQRISPREHVLRRPDTYIGSVEKTEMPMWVYDSEQNKMVYKEVNIVPGLYKIFDEII 130 Query: 45 DNAIDEALAGH-CKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGG 102 NA D + + V I + N +SV ++G+GIP IH +EG+ E+I L Sbjct: 131 VNAADNKVRDPTMNTLKVEIDPEANVISVYNNGKGIPVEIHEKEGIYIPELIFGHLLTSS 190 Query: 103 KFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQR--EGKIHRQIYEHGVPQAPLAVTGET 160 +DDN KV+GG +G G + N S + + K ++Q + + + + Sbjct: 191 NYDDNQKKVTGGRNGYGAKLCNIFSHEFTVETADKLRMKKYKQTWTENMSKKSEPKVVDM 250 Query: 161 EK--TGTMVRFWPSLETFTNV--TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHF 216 ++ T + F P L F + ++ +R+ +++ + + L ++R ++ Sbjct: 251 KRADEYTKITFKPDLAKFGMTKLDDDLVSVVKRRVYDMAGTIPDIKVFLNNERINIKNFR 310 Query: 217 HYEGGIKAFVEYL-NKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQ 275 Y ++ FV L N+ + P I Y ++ EVA +DG Q F N+I Sbjct: 311 KY---VELFVSSLRNRTDSTKPPTILY---DRPNERWEVAYTLSDG-QFKNISFVNSIAT 363 Query: 276 RDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQ 335 GGTH+ + + + A K+ + + L ++ ++ +P F SQ Sbjct: 364 TRGGTHVNYVADEIVKRVQAEFSKKN----KHAALKPFQIKNNLWLFINCQIVNPSFDSQ 419 Query: 336 TKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRK 395 TK+ L + + +++ + L+++ ++ + A+A+ + ++ + + Sbjct: 420 TKETLTTKPSAFGSKCDLSDTFFKQLIKS-----EIIAVCSELAKAKADQQMSKTDGKSR 474 Query: 396 GALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRN---RKNQAILPLKGKILN 452 + R+ L L EGDSA G R + PL+GK+LN Sbjct: 475 SRITGLPKLSDANKAGTRESKKCTLILTEGDSAKTLVVSGLGVVGRDYYGVYPLRGKLLN 534 Query: 453 VEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLT 512 V +A ++++++++E+ + LG + + D LRY ++IMTD D DGSHI+ L++ Sbjct: 535 VREASYNQIINNKEIQAIKKILGLAHNKKYTSTDGLRYGHLMIMTDQDHDGSHIKGLIIN 594 Query: 513 FFYRQMPEIVE-RGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALD-GATLHTNA 570 + P ++ G + P+ + +KG++ D ++ + G ++ Sbjct: 595 YLESTYPSLLHLEGFLIEFITPIVRCRKGREIISFFTLPEFDYWKENNNNGRGWSIKYYK 654 Query: 571 SAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWV 630 + +++ S + K + ++ + L ++ + + V + Sbjct: 655 GLGTSDAKDMKEYFSALDRHIKQFHTIQD--GENDLIDMAFSKKKAD--------VRKEW 704 Query: 631 NALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTH--GVDTDYPLDHEFITGGEYR 688 + + N E LF +R+ VD P + I G + Sbjct: 705 LRTYHPGLYIDHSQPVIEIKNFINQELILFSMADNIRSIPSVVDGLKPGQRKVIYGMFKK 764 Query: 689 RICTLG--EKLRGLLEEDAFIERGERR 713 + E+L G + E GE Sbjct: 765 NLKNEAKVEQLAGYISEQTAYHHGETS 791 >UniRef50_UPI0000DB6EE1 PREDICTED: similar to DNA topoisomerase 2-alpha (DNA topoisomerase II, alpha isozyme) n=1 Tax=Apis mellifera RepID=UPI0000DB6EE1 Length = 1407 Score = 513 bits (1321), Expect = e-144, Method: Composition-based stats. Identities = 143/701 (20%), Positives = 265/701 (37%), Gaps = 61/701 (8%) Query: 10 IKVLKGLDAVRKRPGMYIGDTD----------------------DGTGLHHMVFEVVDNA 47 + L+ + RP YIG + GL+ + E++ NA Sbjct: 23 YQKKSQLEHILLRPDTYIGSVEPVTEIMWVYDKEKESMTQKEIKYVPGLYKIFDEILVNA 82 Query: 48 IDEALAGH-CKEIIVTIHADNSV-SVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFD 105 D I + I+A+N++ SV ++G+GIP IH EE + +I L +D Sbjct: 83 ADNKQRDPKMDTIKIEINAENNIISVWNNGKGIPVVIHKEENMYVPTMIFGHLLTSSNYD 142 Query: 106 DNSYKVSGGLHGVGVSVVNALSQKLELVI--QREGKIHRQIYEHGV-PQAPLAVTGETEK 162 D KV+GG +G G + N S + + + K +Q + + + + + + + Sbjct: 143 DEEEKVTGGRNGYGAKLCNIFSHRFTVETASKEYKKCLKQTWSNNMGSASEPRIKDFSGE 202 Query: 163 TGTMVRFWPSLETFT--NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEG 220 T V F P L F ++ + ++++R +++ GV + L + ++ Sbjct: 203 DFTKVIFSPDLSKFKMQSLDDDIIALMSRRAYDIAASTRGVKVFLNGTKIPVKN------ 256 Query: 221 GIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGT 280 K +V++ K + N E G EVA+ +D F N+I GG Sbjct: 257 -FKDYVDFYIKGREDDVGNPLKIVYENCGPRWEVAIALSDK-GFQQMSFVNSIATTKGGR 314 Query: 281 HLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKL 340 H+ + + L + K+ KA V+ + L ++ + +P F SQTK+ + Sbjct: 315 HVDHVTELIVKQLTETLKKKN---KAGVTIKPFQIKNHLWIFINCLINNPTFDSQTKENM 371 Query: 341 VSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDL 400 + ++E + + +V ++ A+ + ++ + + + L Sbjct: 372 TLQPKSFGSKCTLSEKFITSVTKIG-----IVEAVLTWAKFKADSQLQK-LGPKSKQRKL 425 Query: 401 AGLPG--KLADCQERDPALSELYLVEGDSAGGSAKQGR---NRKNQAILPLKGKILNVEK 455 G+P D L L EGDSA A G R I PL+GKILNV + Sbjct: 426 QGIPKLEDANDAGTNKSLECTLILTEGDSAKTMAVSGLAAIGRDKYGIFPLRGKILNVRE 485 Query: 456 ARFDKMLSSQEVATLITALGCGIGRDEY---NPDKLRYHSIIIMTDADVDGSHIRTLLLT 512 A ++L + E+ LI LG + + LRY ++IMTD D DGSHI+ LL+ Sbjct: 486 ATHKQILENAEINNLIKILGLQYKKKYETREDLKTLRYGKMMIMTDQDQDGSHIKGLLIN 545 Query: 513 FFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIAL-DGATLHTNAS 571 F + P +++ V P+ K KG Q ++++ + Sbjct: 546 FIHHNWPSLLKLNFVEEFITPIVKATKGNQVLSFFSMPEFNKWKSETENFHTYKIKYYKG 605 Query: 572 APALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEA----DLSDEQTVT 627 + ++ + + + ++ + + + ++ Sbjct: 606 LGTSTAKEAKEYFENMTRHRIRFRYDGDQDDQNII--MAFSKKCVDQRKDWLMNHMDETK 663 Query: 628 RWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRT 668 R + E E+ F N E L+ VR+ Sbjct: 664 RRKEIGLGERYLYEKDTRTVSFSDFINVELVLYSNYDNVRS 704 >UniRef50_Q9Y8G8 DNA topoisomerase 2 n=79 Tax=cellular organisms RepID=TOP2_PENCH Length = 1587 Score = 511 bits (1317), Expect = e-143, Method: Composition-based stats. Identities = 157/762 (20%), Positives = 287/762 (37%), Gaps = 80/762 (10%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTD----------------------DGTGLHHM 39 ++ S + L L+ + KRP Y+G T+ GL+ + Sbjct: 60 KDTNVSEKYQKLTQLEHIIKRPDTYVGSTERTTQHMWVYSSESEGMEYREVSYVPGLYKI 119 Query: 40 VFEVVDNAIDEALAGH-CKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTV 97 E+V NA D EI VTI + +SV ++GRGIP +H +E + E+I Sbjct: 120 FDEIVVNAADNKQNDKNMDEIRVTIDRESGEISVWNNGRGIPIEMHSKEKMYVPELIFGH 179 Query: 98 LHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELV--IQREGKIHRQIYEHGVPQ-APL 154 L +DD KV+GG +G G + N S + + R+ K ++Q + + + Sbjct: 180 LLTSSNYDDTQMKVTGGRNGFGAKLCNVFSTEFTIETQDSRQKKKYKQTWTENMTKMGKA 239 Query: 155 AVTGETEKTGTMVRFWPSLETFTNVTEFE--YEILAKRLRELSFLNSGVSIRLRDKRDGK 212 +T T V F P F + ++ +R+ +L+ + V+++L R Sbjct: 240 KITDAKGADYTKVTFKPDYAKFGMTGMDDDFEALVKRRVYDLAG-TAKVAVKLNGSRIPI 298 Query: 213 EDHFHYEGGIKAFVEYLNKNKTPIHP----NIFYFSTEKDGIGVEVALQWNDGFQENIYC 268 + Y ++ + + + + + + P I S EV +DG Sbjct: 299 RNFKMY---MEMYTKAIRRERGDMGPAGKNEIITCS---PDPRWEVGFAVSDG-AFQQVS 351 Query: 269 FTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVP 328 F N+I GGTH+ + L + K+ K + R + V+ + Sbjct: 352 FVNSIAITSGGTHVNYIADQICSKLAEQVKKKN---KNGATLKPAQIRNHIFIFVNALIV 408 Query: 329 DPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRA 388 +P F+SQTK++L + + + + + E + +L+ I+ + Sbjct: 409 NPAFTSQTKEQLTTKQSQFGSKCVLEEDFYKKILKTEVMTNILH---------FAQQKAD 459 Query: 389 REMTRRKGALDLAGLPGKLADCQ---ERDPALSELYLVEGDSAGGSAKQGR---NRKNQA 442 + + + G KL D ++ L L EGDSA G A GR Sbjct: 460 QMLKKTDGGRRSRMNNPKLTDANKAGTKEGHHCTLILTEGDSAKGLAMAGRAVVGPDLFG 519 Query: 443 ILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVD 502 + PL+GK+LNV A FD++ +QE+ + +G ++ + LRY ++I TD D D Sbjct: 520 VFPLRGKLLNVRDASFDQIAKNQEIQNIKNFIGLQHKKEYTDTRGLRYGHLMITTDQDHD 579 Query: 503 GSHIRTLLLTFFYRQMPEIVERG-HVYIAQPPLYKVKKG-----KQEQYIKDDEAMDQYQ 556 GSHI+ LL+ F Q P +++ + P+ KV KG +++ + ++ Sbjct: 580 GSHIKGLLINFLQAQFPSLLKIPEFLIEFITPIVKVWKGDPKNPTKQRSFFTMPEYEAWK 639 Query: 557 ISIALDGATLHTNASA-PALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTL 615 + H E + + + K + M+ + L EL + Sbjct: 640 EEHGHERGWEHKYYKGLGTSTTEDAQIYFRDLDRHLKEFHTMQD--NEVELIELAFSKKK 697 Query: 616 TEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTH--GVDT 673 + + + + + + N E LF +R+ VD Sbjct: 698 ADERKGNVRQFR--------PGTFLDHSVDKITYTDFINKELILFSMADNIRSIPSVVDG 749 Query: 674 DYPLDHEFITGGEYRRICTLGE--KLRGLLEEDAFIERGERR 713 P + + R + + +L G + + GE Sbjct: 750 LKPGQRKVLYTCFRRNLKKDMKVVELAGHVSGTTAYQHGEGS 791 >UniRef50_D1ZCL6 DNA topoisomerase 2 n=6 Tax=Sordariomyceta RepID=D1ZCL6_SORMA Length = 1915 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 155/753 (20%), Positives = 284/753 (37%), Gaps = 65/753 (8%) Query: 8 SSIKVLKGLDAVRKRPGMYIGDTDDG----------------------TGLHHMVFEVVD 45 + L L+ + KRP YIG + GL+ + E++ Sbjct: 128 EMYQKLTQLEHILKRPDTYIGSVERSEQKMWVFNKATGLMENRQISFVPGLYKIFDEILV 187 Query: 46 NAIDEALAGH-CKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGK 103 NA D + + V+I+ + +SV+++G+GIP IH E E+I L AG Sbjct: 188 NAADNSQRDSSMTFLKVSINRESGEISVENNGKGIPVEIHGTEKCYVPELIFGHLLAGSN 247 Query: 104 FDDNSYKVSGGLHGVGVSVVNALSQKL--ELVIQREGKIHRQIYEHGVPQ-APLAVTGET 160 FDDN K GG +G G + N S++ E GK ++Q + + + + +T Sbjct: 248 FDDNEKKTVGGRNGYGAKLTNIFSREFILECQDSVNGKRYKQTWTDNMSKMSTPKITSNK 307 Query: 161 EKTGTMVRFWPSLETFTNVTEFEYEI---LAKRLRELSFLNSGVSIRLRDKRDGKE-DHF 216 + F P F + ++ L +R+ +++ SG+ + L + + Sbjct: 308 AADFVRITFRPDFSKFGMADGIDDDLEALLYRRVYDMAGTVSGIKVWLNGEHLKLNFKTY 367 Query: 217 H--YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIP 274 Y I + + + + + +G EV +DG F NNI Sbjct: 368 CGLYAKAIAKERDEVADGEDVTPATVIFEQQRSEGKLWEVGFTVSDG-SFQQVSFVNNIA 426 Query: 275 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 334 GG+H+ + L + ++ K + + ++ + +P FSS Sbjct: 427 TTSGGSHVNYIADQIIEVLMKELQRK---KGKGHGLKTANVKNQFFIFINCLIDNPAFSS 483 Query: 335 QTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRR 394 QTK++L + + + Q+ + + + ++ ID + +R +++ + Sbjct: 484 QTKEQLTTKPARFGSKCQLGDQFLKKVRQSE---------AIDNLLSFADKKRDKDLAKN 534 Query: 395 KGALDLAGLPGKLADCQ---ERDPALSELYLVEGDSAGGSAKQGR---NRKNQAILPLKG 448 G+ KL + + L L EGDSA G A GR + + PL+G Sbjct: 535 DGSKRKRISNDKLIEANYAGGKYSQECTLILTEGDSARGLAVAGRAILDPNRIGVFPLRG 594 Query: 449 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRT 508 K+LNV A D++L ++EV + LG G+ + LRY ++IM D D+DGSHI+ Sbjct: 595 KMLNVRDASADQILKNKEVENIKKFLGLKHGKVYTDTKDLRYGHLMIMADQDLDGSHIKG 654 Query: 509 LLLTFFYRQMPEIVE-RGHVYIAQPPLYKVKKG---KQEQYIKDDEAMDQYQISIALDGA 564 LL+ FF Q P ++ P+ KV +G ++ Q ++ + QY+ Sbjct: 655 LLINFFECQFPSLLRIPNFFQEFITPVVKVWQGPNPRKPQKLQGFFTLPQYEEWKESHKN 714 Query: 565 TLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQ 624 L S + Q + + + + A + Sbjct: 715 ELRR-----WKYKYLKGLGSSTTDDAQIYFTNLTKHLKEFDVMTREESEMFELAFSKKKA 769 Query: 625 TVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTH--GVDTDYPLDHEFI 682 + A + + + N E LF +R+ VD P + + Sbjct: 770 DARKEWLAKCEPGTYLDHSTEKISYTDFVNRELILFSMADNIRSIPSMVDGLKPGQRKVL 829 Query: 683 TGGEYRRICT--LGEKLRGLLEEDAFIERGERR 713 G + + +L G + ++A GE+ Sbjct: 830 FGCFKQNLIHDQKVVELAGYVSKEAAYHHGEQS 862 >UniRef50_B3H4G2 DNA topoisomerase 2 n=14 Tax=Magnoliophyta RepID=B3H4G2_ARATH Length = 1438 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 155/722 (21%), Positives = 288/722 (39%), Gaps = 72/722 (9%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTDDG--------------------TGLHHMVFEVVDN 46 + L+ + RP YIG + GL+ + E++ N Sbjct: 32 EEMYQKKSQLEHILLRPDTYIGSIEKHTQTLWVYEKDEMVQRPVTYVPGLYKIFDEILVN 91 Query: 47 AIDEALAG-HCKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKF 104 A D + V I + N +SV + G G+P IH EEG+ E+I L + Sbjct: 92 AADNKQRDAKMDSVQVVIDVEQNLISVCNSGAGVPVEIHQEEGIYVPEMIFGHLLTSSNY 151 Query: 105 DDNSYKVSGGLHGVGVSVVNALSQKLELVIQREG--KIHRQIYEHGVPQAPLAVTGETEK 162 DDN K +GG +G G + N S + + K ++Q++E+ + + V + K Sbjct: 152 DDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFENNMGKKSEPVITKCNK 211 Query: 163 --TGTMVRFWPSLETF--TNVTEFEYEILAKRLRELSF-LNSGVSIRLRDKRDGKEDHFH 217 T V F P L+ F T + + +++KR+ +++ L V + L K+ + Sbjct: 212 SENWTKVTFKPDLKKFNMTELEDDVVALMSKRVFDIAGCLGKSVKVELNGKQIPVK---S 268 Query: 218 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRD 277 + + ++ NK++T + TEK EV + ++G Q F N+I Sbjct: 269 FTDYVDLYLSAANKSRT---EDPLPRLTEKVNDRWEVCVSLSEG-QFQQVSFVNSIATIK 324 Query: 278 GGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTK 337 GGTH+ + +T ++ K + + + L V+ + +P F SQTK Sbjct: 325 GGTHVDYVTSQIT----NHIVAAVNKKNKNANVKAHNVKNHLWVFVNALIDNPAFDSQTK 380 Query: 338 DKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGA 397 + L + + +++E + + ++ +++ + ++ +++ + GA Sbjct: 381 ETLTLRQSSFGSKCELSEDFLKKVGKS---------GVVENLLSWADFKQNKDLKKSDGA 431 Query: 398 LDLAGLPGKLADCQE---RDPALSELYLVEGDSAGGSAKQGRNR---KNQAILPLKGKIL 451 L KL D E ++ L L L EGDSA A GR+ + PL+GK+L Sbjct: 432 KTGRVLVEKLDDAAEAGGKNSRLCTLILTEGDSAKSLALAGRSVLGNNYCGVFPLRGKLL 491 Query: 452 NVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLL 511 NV +A ++ +++E+ L LG N + LRY ++IMTD D DGSHI+ LL+ Sbjct: 492 NVREASTTQITNNKEIENLKKILGLKQNMKYENVNSLRYGQMMIMTDQDHDGSHIKGLLI 551 Query: 512 TFFYRQMPEIVERG-HVYIAQPPLYKVKKG--KQEQYIKDDEAMDQYQISIALD--GATL 566 F + P +++ + P+ K + K+ ++++ S+ + G + Sbjct: 552 NFIHSFWPSLLQVPSFLVEFITPIVKATRKGTKKVLSFYSMPEYEEWKESLKGNATGWDI 611 Query: 567 HTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTV 626 E ++ S +K + + +A+ EL + E Sbjct: 612 KYYKGLGTSTAEEGKEYFSNLGLHKKDFVWEDEQDGEAI--ELAFSKKKIE--------A 661 Query: 627 TRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTH--GVDTDYPLDHEFITG 684 + + N +Q + + N E LF R+ VD P + + Sbjct: 662 RKNWLSSYVPGNHLDQRQPKVTYSDFVNKELILFSMADLQRSIPSMVDGLKPGQRKILFV 721 Query: 685 GE 686 Sbjct: 722 AF 723 >UniRef50_P30182 DNA topoisomerase 2 n=6 Tax=Eukaryota RepID=TOP2_ARATH Length = 1473 Score = 505 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 155/722 (21%), Positives = 288/722 (39%), Gaps = 72/722 (9%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTDDG--------------------TGLHHMVFEVVDN 46 + L+ + RP YIG + GL+ + E++ N Sbjct: 32 EEMYQKKSQLEHILLRPDTYIGSIEKHTQTLWVYEKDEMVQRPVTYVPGLYKIFDEILVN 91 Query: 47 AIDEALAG-HCKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKF 104 A D + V I + N +SV + G G+P IH EEG+ E+I L + Sbjct: 92 AADNKQRDAKMDSVQVVIDVEQNLISVCNSGAGVPVEIHQEEGIYVPEMIFGHLLTSSNY 151 Query: 105 DDNSYKVSGGLHGVGVSVVNALSQKLELVIQREG--KIHRQIYEHGVPQAPLAVTGETEK 162 DDN K +GG +G G + N S + + K ++Q++E+ + + V + K Sbjct: 152 DDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFENNMGKKSEPVITKCNK 211 Query: 163 --TGTMVRFWPSLETF--TNVTEFEYEILAKRLRELSF-LNSGVSIRLRDKRDGKEDHFH 217 T V F P L+ F T + + +++KR+ +++ L V + L K+ + Sbjct: 212 SENWTKVTFKPDLKKFNMTELEDDVVALMSKRVFDIAGCLGKSVKVELNGKQIPVK---S 268 Query: 218 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRD 277 + + ++ NK++T + TEK EV + ++G Q F N+I Sbjct: 269 FTDYVDLYLSAANKSRT---EDPLPRLTEKVNDRWEVCVSLSEG-QFQQVSFVNSIATIK 324 Query: 278 GGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTK 337 GGTH+ + +T ++ K + + + L V+ + +P F SQTK Sbjct: 325 GGTHVDYVTSQIT----NHIVAAVNKKNKNANVKAHNVKNHLWVFVNALIDNPAFDSQTK 380 Query: 338 DKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGA 397 + L + + +++E + + ++ +++ + ++ +++ + GA Sbjct: 381 ETLTLRQSSFGSKCELSEDFLKKVGKS---------GVVENLLSWADFKQNKDLKKSDGA 431 Query: 398 LDLAGLPGKLADCQE---RDPALSELYLVEGDSAGGSAKQGRNR---KNQAILPLKGKIL 451 L KL D E ++ L L L EGDSA A GR+ + PL+GK+L Sbjct: 432 KTGRVLVEKLDDAAEAGGKNSRLCTLILTEGDSAKSLALAGRSVLGNNYCGVFPLRGKLL 491 Query: 452 NVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLL 511 NV +A ++ +++E+ L LG N + LRY ++IMTD D DGSHI+ LL+ Sbjct: 492 NVREASTTQITNNKEIENLKKILGLKQNMKYENVNSLRYGQMMIMTDQDHDGSHIKGLLI 551 Query: 512 TFFYRQMPEIVERG-HVYIAQPPLYKVKKG--KQEQYIKDDEAMDQYQISIALD--GATL 566 F + P +++ + P+ K + K+ ++++ S+ + G + Sbjct: 552 NFIHSFWPSLLQVPSFLVEFITPIVKATRKGTKKVLSFYSMPEYEEWKESLKGNATGWDI 611 Query: 567 HTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTV 626 E ++ S +K + + +A+ EL + E Sbjct: 612 KYYKGLGTSTAEEGKEYFSNLGLHKKDFVWEDEQDGEAI--ELAFSKKKIE--------A 661 Query: 627 TRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTH--GVDTDYPLDHEFITG 684 + + N +Q + + N E LF R+ VD P + + Sbjct: 662 RKNWLSSYVPGNHLDQRQPKVTYSDFVNKELILFSMADLQRSIPSMVDGLKPGQRKILFV 721 Query: 685 GE 686 Sbjct: 722 AF 723 >UniRef50_B9PK68 DNA topoisomerase 2 n=3 Tax=Toxoplasma gondii RepID=B9PK68_TOXGO Length = 1688 Score = 498 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 150/776 (19%), Positives = 260/776 (33%), Gaps = 131/776 (16%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTD----------------------DGTGLHHMVFEVV 44 + L+ + RP YIG T+ GL+ +V E++ Sbjct: 38 EQRYQKKSQLEHILLRPDTYIGSTEVHTQALWVMEEGQETMVYKTINYVPGLYKIVDEIL 97 Query: 45 DNAIDEALAG--------------HCKEIIVTIHA-DNSVSVQDDGRGIPTGIHPEEGVS 89 NA D I + I+ +S+ +DG GIP IH E V Sbjct: 98 VNAADVKAREGEEQKGKPLKPGARRMSAIKIDINKASGRISIWNDGEGIPVAIHQEHKVY 157 Query: 90 AAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELV--IQREGKIHRQIYEH 147 E+I L +DD+ +V+GG +G G + N S++ + K + + Sbjct: 158 VPEMIFGQLLTSDNYDDSECRVTGGRNGYGAKLTNIFSREFTVECADGERKKKFKMTWTK 217 Query: 148 GVPQA-PLAVTGETEKTGTMVRFWPSLETFTNV--TEFEYEILAKRLRELSFLNSGVSIR 204 + Q ++ + F P F + +L KR +L+ SGV + Sbjct: 218 NMEQKSESEISSYNGTDYVKISFIPDFAKFGMTGFDDDSLSLLRKRAYDLAG-TSGVKVF 276 Query: 205 LRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDG--------------- 249 L R Y + ++ K F S + Sbjct: 277 LNGTRIDINSFSQY---VDLYLGGRKSEKPSKEKEEFDESDDDWDEGPKRKKAAKKNGKK 333 Query: 250 ------------------------IGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGF 285 EV + DG Q F N+I GGTH++ Sbjct: 334 GELEDEEDVANGVEKKVIKIHDKQWRWEVVISSTDGGQFQQVSFVNSICTTKGGTHVSHV 393 Query: 286 RAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEV 345 + + + K K + ++ L VS + +P F SQTK+ L + Sbjct: 394 IEPLLAAI---VKKANTKNKGGMEIKAAHVKQHLWIFVSCLIVNPAFDSQTKETLTTKPA 450 Query: 346 KSAVEQQMNEL---------------------------LAEYLLENPTDAKIVVGKIIDA 378 K + + + + LL+ + V + + Sbjct: 451 KFGSKCTLADKTIGQVVKSSIVENVVLWAQTKQQSVRAFSLSLLDCWRRGALSVDRPVFR 510 Query: 379 ARAREAARRAREMTRRKGALDLAGLPG--KLADCQERDPALSELYLVEGDSAGGSAKQGR 436 R+ ++ + KG LAG+P D R L L EGDSA S G Sbjct: 511 LFVFVELRKQMKVGKTKGRERLAGIPKLEDANDAGGRHSQDCTLILTEGDSAKTSCLAGL 570 Query: 437 ---NRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSI 493 R + PL+GK+LNV A F ++ ++E+ ++ +G + + LRY S+ Sbjct: 571 SVVGRDRYGVFPLRGKLLNVRDASFKQLTENKEIQNILKIVGLQVNDRTEDTRGLRYGSV 630 Query: 494 IIMTDADVDGSHIRTLLLTFFYRQMPEIVE-RGHVYIAQPPLYKVKKGKQEQYIKDDEAM 552 +IMTD D DGSHI+ LL+ + P++++ RG + P+ KV K E+ Sbjct: 631 MIMTDQDHDGSHIKGLLINMMHHYWPQLLKCRGFLKAFSTPIVKVSKNNVEKAFYTIPEY 690 Query: 553 DQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQ 612 +Q++ S G + ++ ++ + Q + + + ++ + Sbjct: 691 EQWKRSCNTTGWKIKYYKGLGTSTDREFKEYFNDLDKHQIDFVWSGQHDGELI--DMAFN 748 Query: 613 PTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRT 668 E + E + + S + N E LF R+ Sbjct: 749 KKRAED--------RKRWLQSYQEGTFVDHNASSLSYSDFVNKELILFSRYDTERS 796 >UniRef50_A8PTE9 DNA topoisomerase 2 n=1 Tax=Malassezia globosa CBS 7966 RepID=A8PTE9_MALGO Length = 1376 Score = 497 bits (1279), Expect = e-139, Method: Composition-based stats. Identities = 154/729 (21%), Positives = 273/729 (37%), Gaps = 91/729 (12%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTD----------------------DGTGLHHMVFEVV 44 S + + L L+ V +RP YIG + G + + E++ Sbjct: 24 SDTYQKLSQLEHVLRRPDTYIGSVERRTETMWVYDVAKEQMAYRDTSYVPGFYKIFDEIL 83 Query: 45 DNAIDEALAGH-CKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGG 102 NA D + + VTI D ++SV ++G+GIP IH +E V E+I L Sbjct: 84 VNAADNKVRDPSMDTMKVTIDKDAGTISVWNNGQGIPVEIHEKEQVYIPELIFGNLLTSS 143 Query: 103 KFDDNSYKVSGGLHGVGVSVVNALSQKLELV--IQREGKIHRQIYEHGV--PQAPLAVTG 158 +DD+ KV+GG +G G + N S + + ++ ++Q++ + + P Sbjct: 144 NYDDDEAKVTGGRNGFGAKLTNIYSTEFIVETADKQRELKYKQVFSNHMHDKDKPKITKN 203 Query: 159 ETEKTGTMVRFWPSLETF--TNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHF 216 ++ T + F P L F ++ +L KR+ +++ Sbjct: 204 TRKEEYTCITFKPDLSLFHMDSIHPDTEALLMKRVFDMAGT----------------RVI 247 Query: 217 HYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQR 276 GG P I Y ++E G EV +DG F NNI Sbjct: 248 RPHGG-----------NPVPRPTIVYDASEDHGRLWEVGFAVSDG-TARQVSFVNNIATI 295 Query: 277 DGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQT 336 GG H+ + + + ++ K K + R+ L V+ ++ +P F SQT Sbjct: 296 KGGKHVDHVESQIVERIMEHLKK----GKKDAPIKANHIRQQLWIFVNCQIVNPTFDSQT 351 Query: 337 KDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKG 396 K+ L + M + A+ +L++ +ID ++ + R++ G Sbjct: 352 KETLTLKPSAFGSKWVMPDDFAKKVLKS---------GVIDNVQSIVQYHQDRQLQATDG 402 Query: 397 ALDLAGLPGKLADCQ---ERDPALSELYLVEGDSAGGSAKQGR---NRKNQAILPLKGKI 450 KL D + A L L EGDSA G A G R + PL+GK+ Sbjct: 403 RKRSRVSVTKLEDANWAGTKRSAECTLILTEGDSAKGLAVSGLSEVGRDAYGVFPLRGKL 462 Query: 451 LNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLL 510 LNV +A +D++ + E+ + LG G+ D LRY S++IMTD D DGSHI+ L+ Sbjct: 463 LNVREATYDQIKKNTEIKNIKEILGLQHGKSYSTVDGLRYGSLMIMTDQDFDGSHIKGLI 522 Query: 511 LTFFYRQMPEIVE-RGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQIS-IALDGATLHT 568 + + P +++ + P+ K KG++ + +Q++ + G T Sbjct: 523 INYLDHFYPSLLKIPNFLVEFITPIIKATKGQEVRSFFTIPEFEQWKATGDGGRGWTTKY 582 Query: 569 NASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTR 628 +++ + + + + R L +L + + + Sbjct: 583 YKGLGTSKPYEMKEYFRDMDRHMLSFDTI--RPEDHDLLDLAFNKKKADD--------RK 632 Query: 629 WVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTH--GVDTDYPLDHEFITGGE 686 + N E LF +R+ VD P + I Sbjct: 633 EWLRQFVPGTYLDHRIRNIPISDFINKELILFSMADNIRSIPSVVDGLKPGQRKVIFSCF 692 Query: 687 YRRICTLGE 695 R++ T + Sbjct: 693 KRKLKTEIK 701 >UniRef50_A5E7X7 DNA topoisomerase 2 n=4 Tax=Saccharomycetaceae RepID=A5E7X7_LODEL Length = 1492 Score = 496 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 163/736 (22%), Positives = 288/736 (39%), Gaps = 63/736 (8%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTDD----------------------GTGLHHMVFEVV 44 S + + L L+ + KRP YIG + GL+ + E++ Sbjct: 80 SETYQKLSQLEHILKRPDTYIGSVEKTRTEMWCFDVESESMKFQEVTIVPGLYKIFDEIL 139 Query: 45 DNAIDEALAGH-CKEIIVTIHADNSVS-VQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGG 102 NA D + K I V I +N+V V +DG+GIP IH +E + E+I L Sbjct: 140 VNAADNKIRDPSMKNIKVKIDPENNVIQVMNDGKGIPVEIHTKEKMYIPELIFGNLLTSS 199 Query: 103 KFDDNSYKVSGGLHGVGVSVVNALSQKLELV--IQREGKIHRQIYEHGVPQ--APLAVTG 158 +DD+ KV+GG +G G + N S + E+ GK+++Q++ + + P T Sbjct: 200 NYDDDQKKVTGGRNGFGAKLCNIFSTQFEVETADLNTGKLYKQVWTDNMTKVGKPKITTL 259 Query: 159 ETEKTGTMVRFWPSLETFT--NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHF 216 +T+K T + F P L+ F ++ E +L +R+ +L +I L DKR Sbjct: 260 KTKKEYTKITFMPDLQKFGMDSLDEDLLSVLRRRVYDLCGTVRNCNIYLNDKRLSVN--- 316 Query: 217 HYEGGIKAFVEYLNKNKTPI------HPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFT 270 ++ ++ +V+ + + P E EVA +DG N F Sbjct: 317 SFKAYVEMYVKAIRERSPEPEGDAESKPATTTIVHEVFNDRWEVAFAVSDG-NFNQVSFV 375 Query: 271 NNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDP 330 N+I GGTH+ + L + K KK K+ + R+ + ++ + +P Sbjct: 376 NSIATTAGGTHVKYVSDQIITKLVETLSKREKGKK-KLMIKPQEVRDNMFIFINSLIENP 434 Query: 331 KFSSQTKDKLVSSEVKSAVEQ--QMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRA 388 F+SQTK++L + + ++ E L +L+ + KI A A E Sbjct: 435 AFTSQTKEQLTTKPSQFGGKEKFIATENLINRILKTG-----IADKIRAIANANEDKALQ 489 Query: 389 REMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGR---NRKNQAILP 445 + +K + +D L L EG SA A G R P Sbjct: 490 KADGSKKLRIKNQVNLVDANKAGTKDGLKCTLILTEGLSALNLAVAGLTVVGRDYYGCFP 549 Query: 446 LKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDE--YNPDKLRYHSIIIMTDADVDG 503 L+GK+LNV +A D++ + E+ L +G + N LRY I+IMTD D DG Sbjct: 550 LRGKLLNVREASADQVSKNIEINALKQIIGLQHKKVYTQENIKSLRYGHIMIMTDQDQDG 609 Query: 504 SHIRTLLLTFFYRQMPEIVE-RGHVYIAQPPLYKVK-KGKQEQYIKDDEAMDQYQISIAL 561 SHI+ L++ F P +++ G + P+ KV G+ + + +M +++ Sbjct: 610 SHIKGLIINFLETSFPGLLDIPGFLLQFITPIVKVTVNGRGAKKVIPFYSMPEFEAWREG 669 Query: 562 DGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLS 621 +G G + ++ ++R + + + A Sbjct: 670 EGQNCRWTQKYYKGLGTSTP------LEAREYFTALDRHLKRFHALQGEDASCIDLAFSK 723 Query: 622 DEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTH--GVDTDYPLDH 679 + + ++ + ++ N E LF VR+ +D P Sbjct: 724 KKADDRKEWLQNFVPGDNLDPEMNEIPISDFINKELILFSMSDNVRSIPSMLDGLKPGQR 783 Query: 680 EFITGGEYRRICTLGE 695 + + G R++ + Sbjct: 784 KILYGCFKRKLKNEIK 799 >UniRef50_A7ANB1 DNA topoisomerase 2 n=3 Tax=Piroplasmida RepID=A7ANB1_BABBO Length = 1437 Score = 494 bits (1271), Expect = e-138, Method: Composition-based stats. Identities = 153/711 (21%), Positives = 262/711 (36%), Gaps = 77/711 (10%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDD----------------------GTGLHHM 39 + L+ + RP YIG+T+ GL+ + Sbjct: 4 KQKTIEQRYQKKSQLEHILLRPDTYIGNTEMLTQQMWVYNQEAKRMLYEPVTFIPGLYKI 63 Query: 40 VFEVVDNAIDEALA-------GHCKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAA 91 E++ NA D I V +A +++V +DG IP IH E V Sbjct: 64 FDEILVNAADVHARQQSDPSLTRMTCIKVNFNATTGAITVFNDGEPIPVEIHKEHNVYVP 123 Query: 92 EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELV--IQREGKIHRQIYEHGV 149 E+I L +DD +++GG +G G + N S+ + + K +E + Sbjct: 124 EMIFGELLTSDNYDDEDGRITGGRNGFGAKLTNIFSKSFSVTCADSKRHKQFAMKWESNM 183 Query: 150 PQ--APLAVTGETEKTGTMVRFWPSLETFTNVTEFE--YEILAKRLRELSFLNSGVSIRL 205 + +P V K V F P E F T E ++L KR+ +++ G+ + Sbjct: 184 TRVASPAKVGSYHGKDFVKVTFIPDYERFGIPTMDEGTLKVLLKRVYDVAGTT-GLRVYW 242 Query: 206 RDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQEN 265 D+R G D Y G + E + EV + DG Sbjct: 243 NDERLGISDFKQYVG---LYFE----------DDPTVVKVYDKAHRWEVMVSATDGSGFQ 289 Query: 266 IYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSV 325 F NNI GG+H+ + L + + K V + + V+ Sbjct: 290 QVSFVNNITTLKGGSHVQHVLEPLVTALTNKVKSKN---KDGVELKPYQIKNYIFLFVNC 346 Query: 326 KVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAA 385 ++ +P F SQTK+ L + K + MN +L++ + +I+ A+ R Sbjct: 347 QIVNPTFDSQTKETLTTKPAKFGSKYIMNPKAVAQILKS-----TLTERILSFAQGRLNI 401 Query: 386 RRAREMTRRKGALDLAGLPGKLADCQ---ERDPALSELYLVEGDSAGGSAKQGR---NRK 439 ++M K L G+P KL D R L L EGDSA S G R Sbjct: 402 ELKKKMKVTKAVNRLTGIP-KLEDANNAGTRHARNCTLILTEGDSAKTSCLAGLSVVGRD 460 Query: 440 NQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDE-YNPDKLRYHSIIIMTD 498 N + PLKGK+LNV A + +++ + E+ ++ +G + + E PD LRY SI+IMTD Sbjct: 461 NYGVFPLKGKLLNVRDASYKQLVQNAEIQNILKIMGLDVSKKEQTTPDGLRYGSIMIMTD 520 Query: 499 ADVDGSHIRTLLLTFFYRQMPEIVE-RGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQI 557 D DGSHI+ LL+ + P++++ RG + P+ K KG + ++ Sbjct: 521 QDYDGSHIKGLLINLLHYFWPKMIQCRGFIREFVTPIIKATKGDSVLSFFTVQDYVRWVQ 580 Query: 558 SIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTE 617 S + G + + ++ +++ + ++ ++ Sbjct: 581 STNVAGWKIKYYKGLGTSTDKEFKEY----------FVNIQQHLIDFIYEDNADDDSIDL 630 Query: 618 ADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRT 668 A + + + ++ N E F R+ Sbjct: 631 AFNKKRVDDRKLWMQSYEHGTTVDHSIKKLRYTDFINKELIQFSIYDTERS 681 >UniRef50_Q6PUA3 DNA topoisomerase 2 n=4 Tax=Tetrahymena thermophila RepID=Q6PUA3_TETTH Length = 1662 Score = 493 bits (1270), Expect = e-138, Method: Composition-based stats. Identities = 141/698 (20%), Positives = 262/698 (37%), Gaps = 62/698 (8%) Query: 6 DSSSIKVLKGLDAVRKRPGMYIGDTDD----------------------GTGLHHMVFEV 43 ++ + L+ + RP Y+G + L+ + E+ Sbjct: 3 VETTYQKKTQLEHILLRPDTYVGSNEYQDEQMWVLADDGSSFENRQIKYVPALYKIFDEI 62 Query: 44 VDNAIDEALAG-HCKEIIVTIH-ADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAG 101 + NA D K + V I +N +S+ +DG+GIP IH E + E+I L Sbjct: 63 LVNAADNYQRDKRMKRLDVIIDQKNNCISILNDGKGIPVQIHKEYNIYVPELIFGHLLTS 122 Query: 102 GKFDDNSYKVSGGLHGVGVSVVNALSQKLELV--IQREGKIHRQIYEHGVP-QAPLAVTG 158 ++D KV GG +G G + N S K + + K + + + Q+ ++ Sbjct: 123 SNYNDEEKKVVGGRNGFGAKLTNIFSTKFIVESADSKNKKKFQMTWTKNMSEQSEPQISS 182 Query: 159 ETEKTGTMVRFWPSLETF--TNVTEFEYEILAKRLRELSFLNSG-VSIRLRDKRDGKEDH 215 TE T + F+P L+ F + + +++ KR+ +++ + G V + L +R Sbjct: 183 YTESDYTKITFYPDLKKFHMKELEKDIVDLMKKRVYDMAGVIGGSVKVSLNGERISISS- 241 Query: 216 FHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQ 275 + ++ KN+ + + EV ++G Q F N+I Sbjct: 242 ------FSDYCDFYLKNQGAEVIKVSDNKG-TNNQRWEVIASLSEG-QFQQVSFVNSICT 293 Query: 276 RDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQ 335 GGTH+ +T L + K K+ ++ + L V+ + +P F +Q Sbjct: 294 SKGGTHVNYITDQITEKLMETLKK----KEKSLNIKQFQVKSHLWIFVNCLIENPSFDTQ 349 Query: 336 TKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRK 395 TK+ L + +++E + LL++ ++ I+ ARA+E A+ A+ ++ +K Sbjct: 350 TKETLTLRQQSFGSTCEVSEKFIKELLKSN-----IINHILLQARAKEQAKMAKTLSAKK 404 Query: 396 -GALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGR---NRKNQAILPLKGKIL 451 L D R+ L + EGDSA A G R + PLKGK+L Sbjct: 405 QSRLLGVPKLEDANDAGTRNAESCTLIITEGDSAKALAMSGIEVVGRDKFGVFPLKGKML 464 Query: 452 NVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLL 511 NV + ++ + E+ +I +G + + N LRY SI+IM D D DGSHI+ L + Sbjct: 465 NVRDSTSKQITENLEIQNIIKVMGMKLNTNYDNVKSLRYGSIMIMADQDHDGSHIKGLFI 524 Query: 512 TFFYRQMPEIVE-RGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNA 570 F P + + G + P+ KV+KG Q + +++ + Sbjct: 525 NFIQNFWPSLFQMDGFLKEFITPIVKVRKGNQSISFFSIQDFKRWKSTCPNQHLWKIKYY 584 Query: 571 SAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWV 630 + + Q+ + + + + A + Sbjct: 585 KGLGTSTDQ---------EAQEYFGNINKHVISFKYNGKDDEDAIDLAFNKKRAEDRKKW 635 Query: 631 NALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRT 668 + + + N E F R+ Sbjct: 636 LVKYDPEENVDHSQKHLTYKDFVNKELINFSNSDNARS 673 >UniRef50_C5KAQ6 DNA topoisomerase 2 n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5KAQ6_9ALVE Length = 1579 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 144/718 (20%), Positives = 276/718 (38%), Gaps = 80/718 (11%) Query: 6 DSSSIKVLKGLDAVRKRPGMYIGDTDDG----------------------TGLHHMVFEV 43 K + ++ + RP Y+G + GL+ + E+ Sbjct: 15 VEQIYKKMTQIEHILARPDTYVGSLEHQTERMWVWESETGHIVQKQITFCPGLYKIFDEI 74 Query: 44 VDNAIDEALAG--HCKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHA 100 + NA D H I V I A+ + V ++G+G+P IH E V E++ L Sbjct: 75 LVNAADNLQRDPKHMNTIKVDIDAENGFIKVYNNGKGLPIQIHKEHHVYVPELVFGHLLT 134 Query: 101 GGKFDDNSYKVSGGLHGVGVSVVNALSQKL--ELVIQREGKIHRQIYEHGV-PQAPLAVT 157 +DD KV+GG +G G + N S+K + K+++Q +E + + +T Sbjct: 135 SDNYDDKEKKVTGGRNGYGAKLSNIFSKKFLITTADRTRKKLYKQQFEKSMQKKKEPVIT 194 Query: 158 GETEKTGTMVRFWPSLETFTNV--TEFEYEILAKRLRELSFLN--SGVSIRLRDKRDGKE 213 ++ T V+FWP LE F +++KR+ +++ + + L KR Sbjct: 195 DYDKEDFTCVQFWPDLEKFGMTHLDADIVSLMSKRVIDVAGTSASKKCKVYLNGKRVPIS 254 Query: 214 DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFS----------TEKDGIGVEVALQWND--- 260 K + E + P I+ + EV + +D Sbjct: 255 S-------FKDYAELYLTGEWVDAPKIYEKVARANVYVSCGHVQVSDRWEVLVTLSDPAG 307 Query: 261 -GFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGL 319 G Q F N+I GGTH+ + +NA + K K + + + Sbjct: 308 GGGQFQQVSFANSINTVKGGTHVNHVAEQI---VNAVLKKAQTKNKGGMELKPFQVKNHM 364 Query: 320 IAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAA 379 V+ + +P F SQTK+ L K + ++E + +L + +V ++++ A Sbjct: 365 WLFVNALIENPTFDSQTKETLTLKVAKFGSKCVLSEGTMKKVLSSG-----IVDQVVNWA 419 Query: 380 RAREAARRAREM--TRRKGALDLAGLPG--KLADCQERDPALSELYLVEGDSAGGSAKQG 435 + ++ A ++ G + G+P D R L L EGDSA A G Sbjct: 420 KFKQTATLQSKIKVGGTGGQTRIFGVPKLEDANDAGGRYSDRCTLILTEGDSAKALAVAG 479 Query: 436 RN---RKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHS 492 R + PL+GK+LNV +A + + + ++E+ ++ +G + LRY S Sbjct: 480 LGVIGRDKYGVFPLRGKVLNVREASYKQTVDNKEIQAILKIIGLEPRKAYDGVKGLRYGS 539 Query: 493 IIIMTDADVDGSHIRTLLLTFFYRQMPEIVE-RGHVYIAQPPLYKVKKGKQEQYIKDDEA 551 I++MTD D+DGSHI+ LL+ + P +++ RG + P+ K KG++E Sbjct: 540 IMVMTDQDLDGSHIKGLLINLVHHWWPGLLQTRGFMKEFVTPIVKCVKGRRELSFFTLTE 599 Query: 552 MDQYQISIAL-DGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELI 610 ++++ + G + + ++ S+ + + R ++ Sbjct: 600 YEEWKRNNNDGKGWKIKYYKGLGTSTSKEAQQYFSQISKHSLSFD--YRDGDDGEAIDMA 657 Query: 611 YQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRT 668 + + + ++ + + + ++ N E F +R+ Sbjct: 658 FNKKRADD--------RKEWINGYADGDCVDHSKASLRYLDFINKELVQFSKYDVMRS 707 >UniRef50_B0EP10 DNA topoisomerase 2 n=3 Tax=Entamoeba RepID=B0EP10_ENTDI Length = 1351 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 141/692 (20%), Positives = 254/692 (36%), Gaps = 67/692 (9%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTDD---------------------------GTGLHHM 39 L + + RP YIG + GL + Sbjct: 9 EDIYVKLSHKEQILTRPDTYIGSIERNDEQVWLYEEPTEQYEEGRMVQKVISLAPGLFKI 68 Query: 40 VFEVVDNAIDEALAGH-CKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVL 98 E++ NA D I VTI NS++V ++G+GIP IH +E + E+I L Sbjct: 69 YDEILVNASDNFQRDPKMTTIKVTIE-GNSITVYNNGKGIPIEIHKKENIYIPELIFGHL 127 Query: 99 HAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTG 158 + D+ KV+GG +G G + N S K + KI++Q +++ + Sbjct: 128 LTSSNYKDDDKKVTGGRNGYGAKLANIFSTKFSIETCDGKKIYKQTWKNNMSDKEEPEIE 187 Query: 159 ETEK--TGTMVRFWPSLETF--TNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKED 214 +K T V F P + F + + +L +R +++ N G I + K+ ++ Sbjct: 188 SVKKVEEYTKVTFTPDYKRFQMKGMEDDARRLLIRRAYDIAGCNPGKRIWINGKKVCFKN 247 Query: 215 HFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIP 274 + ++ +EK G ++ + + G + F N+I Sbjct: 248 -------FAEYARMYVGDEP--------IVSEKAGERWDICVCASKG-EPMQISFVNSIN 291 Query: 275 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 334 GGTH+ MT+ L +K K + L V+ + +P F S Sbjct: 292 TSHGGTHVDYVTGLMTKYL---AEKMKKLNKKGAEIKPFQIKNHLFVFVNSLIENPAFDS 348 Query: 335 QTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRR 394 QTK+ L + K + +++ + L + VV I+ A + + ++ Sbjct: 349 QTKETLKTQVNKFGSKPTLSDKFFKELGK-----LSVVDDILAWAIKKGEMDLNKSGGKK 403 Query: 395 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGR---NRKNQAILPLKGKIL 451 + ++ L L L EGDSA A G R + PL+GK L Sbjct: 404 TARITGIPKLDDANKAGTKEGNLCTLILTEGDSAKTLAVSGLSVVGRDYYGVFPLRGKPL 463 Query: 452 NVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLL 511 N + K+ +QE + +G G+ + ++LRY S++IM D D DGSHI+ LL+ Sbjct: 464 NAREIAPSKVKENQEFENIAKIMGLRYGKVYSSINELRYGSVMIMADQDFDGSHIKGLLI 523 Query: 512 TFFYRQMPEIVE-RGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNA 570 +F+ P +++ + P+ KVK+GKQE ++++ + +G Sbjct: 524 NYFHTFWPSLLKIDNFLVEFITPIVKVKRGKQEISFFTLPQFNEWKDARIQEGQLKKWEI 583 Query: 571 SAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWV 630 G S+ + + + ++ K + A + Sbjct: 584 KYYKGLGT------SKDSDAKAYFSDLDTHKIKFAYDGASSDEVIDLAFNRKRADDRKEW 637 Query: 631 NALVSELNDKEQHGSQWKFDVHTNAEQNLFEP 662 +Q ++ + E LF Sbjct: 638 LKGYDPNTYLDQDVDSISYEDFVHKELILFSY 669 >UniRef50_A8S818 Putative uncharacterized protein n=6 Tax=Bacteria RepID=A8S818_9FIRM Length = 699 Score = 491 bits (1264), Expect = e-137, Method: Composition-based stats. Identities = 184/657 (28%), Positives = 312/657 (47%), Gaps = 44/657 (6%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Y + SI LKG D VRKRP + G D G H +FE+V N+IDEA GH I V Sbjct: 40 KQEYGNESITSLKGADRVRKRPAVIFGS-DGVEGCAHSIFEIVSNSIDEARDGHGDTINV 98 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDD--NSYKVSGGLHGVG 119 T D SV V+D GRG+P + EG E++ ++AGGK+ + ++Y+ S GL+G+G Sbjct: 99 TRCKDGSVIVEDFGRGMPVDWNNGEGRFNWELLFCEMYAGGKYGEGEDNYEFSLGLNGLG 158 Query: 120 VSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPL-AVTGETEKTGTMVRFWPSLETFTN 178 + S + I R+G + ++ G L + +TG+++ + P E FT+ Sbjct: 159 LCATQYASAWMTADIYRDGYHYHLDFKKGENVGGLQKEPYKGRRTGSIIHWKPDDEVFTD 218 Query: 179 VTEFEYEILAKRLRELSFLNSGVSIRLRDKRD-------GKEDHFHYEGGIKAFVEYLNK 231 + + LR + +N+G+++ D+++ + + Y+ GI +V + Sbjct: 219 I-DVPGSYYKDVLRRQAVVNAGLTLNFTDEKEKDPATGKPWHESWCYQNGIADYVAEVAG 277 Query: 232 NKTPIHPNIFYFSTEKDG----------IGVEVALQWNDGFQENIYCFTNNIPQRDGGTH 281 T +F +E G + + A +++ Q + + N+ GG+ Sbjct: 278 EDTL--TPVFSCESEAVGRDREDQPDYKVRMSAAFCFSNKVQ-LLEYYHNSSWLEHGGSP 334 Query: 282 LAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLV 341 R A +N Y+ ++ KK + + + D ++ L+ V S + +QTK + Sbjct: 335 EHAVRTAFVYQINKYLKEKNLYKKGESTISFQDVQDCLVYVSSSFSTRTSYENQTKKAIT 394 Query: 342 SSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRR--KGALD 399 + V A+ + L Y LE P +A+ + +++ ++RE A + R+ ++ +D Sbjct: 395 NKFVSQAMTDFLKHYLEVYFLEKPEEAQKICQQVLVNKQSREHAEKTRQSIKKTLSTQID 454 Query: 400 LAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD 459 LA K DC+ RD A ELY+VEGDSA G+ K R+ + QAI+P++GKILN KA + Sbjct: 455 LANRVQKFVDCRTRDSARRELYIVEGDSAMGAVKSSRDSEYQAIMPIRGKILNCLKADYA 514 Query: 460 KMLSSQEVATLITALGCGIGRD--------EYNPDKLRYHSIIIMTDADVDGSHIRTLLL 511 ++ S + LI +GCG+ +N D LR++ I+I TDADVDG IRTL+L Sbjct: 515 RIFKSDVIVDLIKVMGCGVELGGKHNKELATFNLDNLRFNKIVICTDADVDGYQIRTLVL 574 Query: 512 TFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNAS 571 T YR P ++ +G+VYIA+ PLY++ + + + + I T+ + Sbjct: 575 TMLYRLTPTLINKGYVYIAESPLYEITTKDRTYFAYTESEKAAFLQKIGDKKYTIQRSKG 634 Query: 572 APALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTR 628 E + +N RR K M +++ + + L D + Sbjct: 635 LGENDPEMM---------WLTTMNPESRRLIKVMPTDVVQTAQVFDILLGDNLAGRK 682 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 60/310 (19%), Positives = 106/310 (34%), Gaps = 31/310 (10%) Query: 522 VERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALE 581 + V A K + +++ E + + ++ + + L Sbjct: 393 ITNKFVSQAMTDFLKHYL--EVYFLEKPEEAQKICQQVLVNKQSREHAEKTRQSIKKTLS 450 Query: 582 KLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKE 641 + N QK ++ R + L + + S + + LN + Sbjct: 451 TQIDLANRVQKFVDCRTRDSARRELYIVEGDSAMGAVKSSRDSEYQAIMPIRGKILNCLK 510 Query: 642 QH------------------------GSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPL 677 G K N + F IV VD Sbjct: 511 ADYARIFKSDVIVDLIKVMGCGVELGGKHNKELATFNLDNLRFNKIVICTDADVDGYQI- 569 Query: 678 DHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPV--ASFEQALDWLVKESRRGLS 735 + YR TL K + E E + + + + +L K + + Sbjct: 570 -RTLVLTMLYRLTPTLINKGYVYIAESPLYEITTKDRTYFAYTESEKAAFLQKIGDKKYT 628 Query: 736 IQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEEN 795 IQR KGLGE +PE +W TTM+PESRR+++V D + Q+F L+GD + R+ I ++ Sbjct: 629 IQRSKGLGENDPEMMWLTTMNPESRRLIKVMPTDVVQTAQVFDILLGDNLAGRKEHIAQH 688 Query: 796 -ALKAANIDI 804 A ++D+ Sbjct: 689 GAEYLDDLDV 698 >UniRef50_Q18GY2 DNA gyrase subunit B n=10 Tax=cellular organisms RepID=Q18GY2_HALWD Length = 852 Score = 488 bits (1256), Expect = e-136, Method: Composition-based stats. Identities = 240/432 (55%), Positives = 306/432 (70%), Gaps = 7/432 (1%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 Y + I+VL+GL+AVRKRP MYIG TD GLHH+V+EVVDNAIDEALAGHC +I VT Sbjct: 5 TEYGAGDIQVLEGLEAVRKRPAMYIGSTD-SRGLHHLVYEVVDNAIDEALAGHCDQIDVT 63 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 +H D SVSV D+GRGIP H + + A EVIMTVLHAGGKFD+ SY+VSGGLHGVGVSV Sbjct: 64 LHEDGSVSVADNGRGIPVDTHEQHDIPAVEVIMTVLHAGGKFDNKSYQVSGGLHGVGVSV 123 Query: 123 VNALSQKLELVIQREGKIHRQIYEHGVPQ----APLAVTGETEKTGTMVRFWPSLETFTN 178 VNALS+ LE+ I+R+G + R +E+G PQ + E+TGT +RFWPS + F Sbjct: 124 VNALSRWLEVEIKRDGALWRDRFEYGEPQPGAFERVRDLDPDEETGTTIRFWPSDDIF-E 182 Query: 179 VTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHP 238 TEFE+ L RLREL+FLNSGV I + + D F + GGI+ FV+YL++ KT +H Sbjct: 183 TTEFEFSTLENRLRELAFLNSGVEICINGETDDINSKFCFNGGIREFVKYLDETKTVLHD 242 Query: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 ++ ++ E+DGI VEVALQ + Q +I+ F NNI R+GGTHL GF+ A+TR +N Y Sbjct: 243 SVVHYQNEQDGIEVEVALQATEELQGSIHAFANNINTREGGTHLTGFKTALTRVINDYGR 302 Query: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 + S G+D REGL AVVS+K PDP+F QTK KL +S+V+ VE +E L Sbjct: 303 EHNLL-DGFDSLQGEDVREGLTAVVSIKHPDPQFEGQTKTKLGNSDVRGIVESTTHERLG 361 Query: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 YL ENP AK++V K ++AA+AR+AA++A E+TRRK AL+ LPGKLADCQ RDPA S Sbjct: 362 TYLEENPDVAKVIVRKAVEAAKARKAAKQAEELTRRKSALESTSLPGKLADCQSRDPAES 421 Query: 419 ELYLVEGDSAGG 430 EL++VEGDSAGG Sbjct: 422 ELFIVEGDSAGG 433 Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 76/199 (38%), Positives = 106/199 (53%), Gaps = 11/199 (5%) Query: 431 SAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRY 490 SAKQGR R+ QAILPLKGKILNVEK R D++L + EV LITA+G GIG DE+N + RY Sbjct: 649 SAKQGRERRFQAILPLKGKILNVEKHRLDRILENDEVRALITAIGAGIG-DEFNVEDARY 707 Query: 491 HSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDE 550 + +II++DADVDG+HIRTLLLT YR M +VE G+VY A+PPLY+++ Sbjct: 708 NRLIILSDADVDGAHIRTLLLTLLYRHMRPLVEAGYVYAAKPPLYRIRYNGNTYDAMTKS 767 Query: 551 AMDQYQIS-IALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKEL 609 DQ + + + E L + +N R + +++ Sbjct: 768 ERDQVISDVCNGNPTQVQRFKGLGEMNPEQL---------WETTMNPENRVLKQITIEDA 818 Query: 610 IYQPTLTEADLSDEQTVTR 628 + + D + Sbjct: 819 AAADKMFSVLMGDAVEPRK 837 Score = 162 bits (409), Expect = 6e-38, Method: Composition-based stats. Identities = 57/185 (30%), Positives = 87/185 (47%), Gaps = 5/185 (2%) Query: 623 EQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFI 682 R L ++ N E + ++ + VD + + Sbjct: 670 NVEKHRLDRILENDEVRALITAIGAGIGDEFNVEDARYNRLIILSDADVDGAHI--RTLL 727 Query: 683 TGGEYRRICTLGEKLRGLLEEDAFIE-RGERRQPVASFEQALDWLVKESRRG--LSIQRY 739 YR + L E + R A + D ++ + G +QR+ Sbjct: 728 LTLLYRHMRPLVEAGYVYAAKPPLYRIRYNGNTYDAMTKSERDQVISDVCNGNPTQVQRF 787 Query: 740 KGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKA 799 KGLGEMNPEQLWETTM+PE+R + ++T++DA AAD++F+ LMGDAVEPR+ FI++ A A Sbjct: 788 KGLGEMNPEQLWETTMNPENRVLKQITIEDAAAADKMFSVLMGDAVEPRKEFIKDRATDA 847 Query: 800 ANIDI 804 +DI Sbjct: 848 EWVDI 852 >UniRef50_P77966 Ssp gyrB intein n=45 Tax=cellular organisms RepID=GYRB_SYNY3 Length = 1078 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 229/433 (52%), Positives = 296/433 (68%), Gaps = 5/433 (1%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 + +Y + I+VL+GL+ VRKRPGMYIG T GLHH+V+EVVDNAIDEALAG+C I + Sbjct: 5 TTNYGADQIQVLEGLEPVRKRPGMYIGSTG-PKGLHHLVYEVVDNAIDEALAGYCTHIEI 63 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 I+AD SV+V D+GRGIPT IHP G SA E ++TVLHAGGKF YKVSGGLHGVGVS Sbjct: 64 DINADGSVTVVDNGRGIPTDIHPTTGRSALETVLTVLHAGGKFGGGGYKVSGGLHGVGVS 123 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLA-VTGETEKTGTMVRFWPSLETFTNVT 180 VVNALS+ +E+ + R+GK H Q +E G P L E TGT V F P + F + Sbjct: 124 VVNALSEWVEVKVWRQGKEHFQRFERGNPIGTLEATPNEGHSTGTQVSFLPDTQIFKDGI 183 Query: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDG--KEDHFHYEGGIKAFVEYLNKNKTPIHP 238 EF+Y LA RL+EL++LN+GV I D+R KE+ F+YEGGI+ +V Y+ +KTP+H Sbjct: 184 EFDYHTLASRLKELAYLNAGVRITFGDRRADSLKEEQFYYEGGIREYVTYMTTDKTPLHE 243 Query: 239 NIFYFSTEKDGIGVEVALQWN-DGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYM 297 I Y S EK+ + VEVALQW D + + + F NNI DGGTHL G +A +TRTLN+ Sbjct: 244 EIIYTSGEKNDVQVEVALQWCVDAYSDTLLGFANNIRTIDGGTHLEGLKAVLTRTLNSVA 303 Query: 298 DKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELL 357 K K + G++ REGL V+SVKVPDP+F QTK KL ++EV+ V+ + E L Sbjct: 304 RKRNKLKDGDSNLGGENIREGLTGVISVKVPDPEFEGQTKTKLGNTEVRGIVDTLVGEAL 363 Query: 358 AEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPAL 417 E+L NP A ++ K + A +A EAARRARE+ RRK L+ + LPGKLADC +DP+ Sbjct: 364 TEFLEFNPGVADAIIEKAVQAFKAAEAARRARELVRRKSVLESSTLPGKLADCSSKDPSE 423 Query: 418 SELYLVEGDSAGG 430 SE+++VEGDSAGG Sbjct: 424 SEIFIVEGDSAGG 436 Score = 222 bits (565), Expect = 5e-56, Method: Composition-based stats. Identities = 76/202 (37%), Positives = 113/202 (55%), Gaps = 8/202 (3%) Query: 431 SAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRY 490 SAKQGR+R+ QAILPL+GKILN+EK K+ + E+ LITALG GI D+++ LRY Sbjct: 872 SAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITALGLGIKGDDFDISSLRY 931 Query: 491 HSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDE 550 H ++IMTDADVDG+HIRTLLLTFFYR ++V++G++YIA PPLYK+++GK Y D Sbjct: 932 HRVVIMTDADVDGAHIRTLLLTFFYRYQRDLVDQGYIYIACPPLYKLERGKNHFYCYSDR 991 Query: 551 AMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELI 610 + + + + GE + + + + +N R + +++ Sbjct: 992 ELQEQISQFPPNA---NYTIQRFKGLGEMMPQQLWDT-----TMNPESRTMKRVHIEDAA 1043 Query: 611 YQPTLTEADLSDEQTVTRWVNA 632 + + D R Sbjct: 1044 EADRIFTVLMGDRVAPRREFIE 1065 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 63/297 (21%), Positives = 122/297 (41%), Gaps = 19/297 (6%) Query: 522 VERGHVYIAQPPLYKVKKGKQ---------EQYIKDDEAMD-QYQISIALDGATLHTNAS 571 +E G++ I+ Y++ + E+Y ++DE + + ++ + + Sbjct: 787 IENGYLDISAYDSYRISTKDKSLLRFDRFCERYFENDENLAREAVLNYNHRIVNIEAVSE 846 Query: 572 APALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELI-YQPTLTEADLSDEQTVTRWV 630 + + + A+ ++ ++ + ++ + + + +D+ + + Sbjct: 847 TIDVYDIEVPHTHNFALASGVFVHNSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNT 906 Query: 631 NALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRI 690 E+ + + +V + VD + Y+R Sbjct: 907 -----EIQALITALGLGIKGDDFDISSLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQRD 961 Query: 691 CTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKES-RRGLSIQRYKGLGEMNPEQ 749 + +ERG+ S + + + + +IQR+KGLGEM P+Q Sbjct: 962 LVDQGYIYIACPPLYKLERGKNHFYCYSDRELQEQISQFPPNANYTIQRFKGLGEMMPQQ 1021 Query: 750 LWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAA--NIDI 804 LW+TTM+PESR M RV ++DA AD++FT LMGD V PRR FIE K ++DI Sbjct: 1022 LWDTTMNPESRTMKRVHIEDAAEADRIFTVLMGDRVAPRREFIETYGTKLDLTDLDI 1078 >UniRef50_Q7YZS4 DNA topoisomerase 2 n=1 Tax=Physarum polycephalum RepID=Q7YZS4_PHYPO Length = 1498 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 155/789 (19%), Positives = 278/789 (35%), Gaps = 109/789 (13%) Query: 6 DSSSIKVLKGLDAVRKRPGMYIGDTD----------------------DGTGLHHMVFEV 43 + ++ + RP YIG GL+ + E+ Sbjct: 319 VEEMYQKKTPVEHILLRPDSYIGSIQHTHQEQWVINESDGRMEYRECKYVPGLYKIFDEI 378 Query: 44 VDNAIDEALAGH-CKEIIVTIHA-DNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAG 101 + NA D H + VTI +N +S+ ++G+GIP +H +E V E+++ L G Sbjct: 379 LVNAADNKQRDHKMNVLQVTIDPANNIISILNNGKGIPVQLHEKEKVYVPELVLGTLLTG 438 Query: 102 GKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQR--EGKIHRQIYEHGVPQAPLAVT-- 157 FDD KV+GG +G G + N S E+ K++RQ + + Q Sbjct: 439 SNFDDKIAKVTGGRNGFGAKLTNIFSTSFEVETADAARHKLYRQSWSENMSQRTEPSIEH 498 Query: 158 --GETEKTGTMVRFWPSLETFTNVTEFEYEILA---KRLRELSFLNSGVSIRLRDKRDGK 212 G T + F P L F + +IL +R+ +++ V + L Sbjct: 499 YSGPKGSDYTRITFSPDLAKFNMQSLENGDILRLMKRRIYDMAACLPSVQVSLNGIPIP- 557 Query: 213 EDHFHYEGGIKAFVEYLN-KNKTPI------------------------------HPNIF 241 G A+V K+ P+ + F Sbjct: 558 -------SGFDAYVSMYQPKDAQPLSNAEDGAQNEQEEHGEGAEGTEGEQPGKQPTKHPF 610 Query: 242 YFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEG 301 ++ D V V L +G Q + F N+I GGTH+ + + ++ + K Sbjct: 611 VYAKINDRWQVAVGLTMLEG-QFSQVSFVNSIATSKGGTHVNHVAEQVVKAIHERITK-- 667 Query: 302 YSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYL 361 K + R L V+ + +P F SQTKD L + + + + + Sbjct: 668 --KYPDLDTRPAHIRNNLFVFVNCLIENPAFDSQTKDTLTTRPAHFGSACDLPDSFLKRI 725 Query: 362 LENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQ---ERDPALS 418 + ++ K++ A+ ++ A + TR+ KL D + Sbjct: 726 VAQV----PIIDKVVGWAKLKQMAEFEKSSTRKPKDKAGIKAIPKLDDANFAGGPRSSEC 781 Query: 419 ELYLVEGDSAGGSAKQGR---NRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALG 475 L + EGDSA A G R + PL+GK+LNV +++ ++E+ L LG Sbjct: 782 TLIITEGDSAKSLAVSGLSIVGRDKYGVFPLRGKLLNVRDQSPKRVMENEELKHLRMILG 841 Query: 476 CGIGRDE---YNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVER-GHVYIAQ 531 G++ + +LRY +++MTD D DGSHI+ L + F + P ++E+ G + Sbjct: 842 LTPGKEYRTAEDRAELRYGKVMLMTDQDHDGSHIKGLFVNFMIQFWPSLLEQDGFLEQFI 901 Query: 532 PPLYKVKKGKQEQYIKDDEAMDQYQISIALD---GATLHTNASAPALAGEALEKLVSEYN 588 P+ K G + Q + ++ + D + + + + + Sbjct: 902 TPIVKAFHGAEVQTFYTTSEYEIWRSQLPDDQLSKWRIKYYKGLGTSSSQEAREYFKD-- 959 Query: 589 ATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWK 648 +ER + + + A DE + A + + + Sbjct: 960 --------LERHRIEFKWDDT-TTTKMDMAFGKDETAQRKTWAAAIPKDWFVDYTVKNLT 1010 Query: 649 FDVHTNAEQNLFEPIVRVRTH--GVDTDYPLDHEFITGGEYRRICTLGE--KLRGLLEED 704 + + E F R VD P + + R + + +L G + E Sbjct: 1011 YSDFVDKELVQFCRAANARAIPSVVDGLKPGQRKVLYASFKRGLTQEMKVAQLAGYVAEH 1070 Query: 705 AFIERGERR 713 GE Sbjct: 1071 TAYHHGEES 1079 >UniRef50_Q55BP5 Probable DNA topoisomerase 2 n=1 Tax=Dictyostelium discoideum RepID=TOP2_DICDI Length = 1521 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 154/728 (21%), Positives = 277/728 (38%), Gaps = 71/728 (9%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTDD--------------------GTGLHHMVFEVVDN 46 + + LD + RP YIG T+ G++ + E++ N Sbjct: 104 EEIYQKKELLDQILLRPDTYIGSTERQEEELWVWEDKRMVHRKVSFVPGIYKIFDEILVN 163 Query: 47 AIDEALA-GHCKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKF 104 A D G+ K I V I + +SV +DG GIP +H E + E+I L + Sbjct: 164 AADNKQREGNMKFIKVVIDREKGFISVTNDGAGIPIQVHSEHKIYIPELIFGNLLTSSHY 223 Query: 105 DDNSYKVSGGLHGVGVSVVNALSQKLELV--IQREGKIHRQIYEHGV--PQAPLAVTGET 160 DD+ +++GG +G G + N S K + + K+++Q + + + + P + + Sbjct: 224 DDSEKRLTGGRNGFGAKLANIFSTKFIVECADSKSKKLYKQTFTNNMRSKEDPKITSYQN 283 Query: 161 EKTGTMVRFWPSLETFT--NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHY 218 + T + F+P L+ F + +L+KR+ +++ N + + L D+ Sbjct: 284 KTDYTKITFYPELDRFGMVEFDDDLVALLSKRVYDIAGCNPTLKVSLNDE---------- 333 Query: 219 EGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDG 278 E GI++F +Y+N + EK E+A+ + Q N F N+I G Sbjct: 334 ELGIRSFEKYINLYFPDEENAPKVY-YEKVSDRWELAVTLSKESQFNQVSFVNSICTVKG 392 Query: 279 GTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKD 338 GTH+ + + + ++K+ K + L V+ + +P F SQTK+ Sbjct: 393 GTHVTHALSNIVTAIQEQVNKKN---KGSADIKPAFIKNHLSVFVNCLIENPHFDSQTKE 449 Query: 339 KLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGAL 398 L S + +E + +L++ + +V I++ A+ ++ + R + G Sbjct: 450 TLTSKISSFGSRCEPSEKFIKRVLDSKSG---IVASILEFAQFKDQSALKRSTSS--GGK 504 Query: 399 DLAGLPGKLADCQ---ERDPALSELYLVEGDSAGGSAKQGR---NRKNQAILPLKGKILN 452 KL D L L EGDSA A G + + PLKGK+LN Sbjct: 505 KGKVSIPKLDDANLAGGTKSEDCTLILTEGDSAKSLATAGISVVGKDHYGAFPLKGKLLN 564 Query: 453 VEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLT 512 V K++++ E+ ++T LG G+ LRY ++IMTD D DGSHI+ L++ Sbjct: 565 VRDQS-TKVINNDEINNIVTILGLKYGKVYETLSDLRYGHLMIMTDQDHDGSHIKGLIIN 623 Query: 513 FFYRQMPEIVE-RGHVYIAQPPLYKVKKGKQE-QYIKDDEAMDQYQISIALDGATLHTNA 570 + P ++ G + P+ KV K Q+ ++ G + Sbjct: 624 MVHHFWPTLLRMPGFLVEFITPIVKVFKNNQKPISFYTMPEFLKW-RETNDKGWDVKYYK 682 Query: 571 SAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWV 630 ++ S+ + + + A + Sbjct: 683 GLGTSTPGEGKEYFSDLERHKIDFEW-----------DEGANDNIELAFSKSRADDRKKW 731 Query: 631 NALVSELNDKEQHG-SQWKFDVHTNAEQNLFEPIV--RVRTHGVDTDYPLDHEFITGGEY 687 A E EQ G + + N E LF R + VD + + Sbjct: 732 MAEHIEGTFLEQFGVKKLTYSDFINKELVLFSIADCERSIPNIVDGLKTSHRKTLYSCFK 791 Query: 688 RRICTLGE 695 R + + Sbjct: 792 RNLKKEIK 799 >UniRef50_B7G2K9 DNA topoisomerase 2 (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7G2K9_PHATR Length = 1165 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 148/753 (19%), Positives = 272/753 (36%), Gaps = 80/753 (10%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTDDGTGL--------------------HHMVFEVVDN 46 L+ V RP MY+G + + + E++ N Sbjct: 2 EDQYSRKTPLEHVLLRPSMYVGSNEKAQPIACWVPDPIPTPPTEELLMKTTSVFDEILVN 61 Query: 47 AIDEALAGH--CKEIIVTIH-----ADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLH 99 A D C I V I D + V++DG+GIP +H +EG+ E++ L Sbjct: 62 AADNLQRHPDSCTRIDVIIDPGSDNRDPFIRVRNDGKGIPVQVHQKEGMYVPEMLFGHLL 121 Query: 100 AGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELV--IQREGKIHRQIYEHGVPQA---PL 154 G FDDN +++GG HG G + N S+ + R+ +RQ + + A + Sbjct: 122 TGSNFDDNEKRLTGGRHGFGAKLTNIFSKSFTVETLDSRKRLKYRQTWSSNMTNASSPEI 181 Query: 155 AVTGETEKTGTMVRFWPSLETFTN------VTEFEYEILAKRLRELSFLNSG-VSIRLRD 207 T V F P + TN +++ +Y ++ +R+ +++ ++G + + L Sbjct: 182 VEVPADATDYTCVSFVPDVARLTNDASALSISKEDYALMCRRVLDVAGCSAGRLRVTLNG 241 Query: 208 KRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIY 267 G + K + + V + ++ + Sbjct: 242 VDVTM-------GSFPDYARLYRKQDSLP------VCFDAINSRWTVGVGLSETGSFEMV 288 Query: 268 CFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKV 327 F N + GGTH+ + + + ++K + A+ R L V+ + Sbjct: 289 SFVNGMATSRGGTHVNSILQQVIKKIQEKIEKTD--PELVQMASQGVIRRHLFVSVAALI 346 Query: 328 PDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKI-VVGKIIDAARAREAAR 386 +P F SQ K+ L SS ++E + +L++ + +V +I AA++R+ A Sbjct: 347 ENPTFDSQMKECLTSSPADFGSSFSLSESFIKSVLQSEEEGGPGIVEEIRRAAQSRQQAT 406 Query: 387 RAREMTRRKGALDLAGLPGKLAD---CQERDPALSELYLVEGDSAGGSAKQGR---NRKN 440 + + + L +P KL D + + L L EGDSA A G R Sbjct: 407 LLKVIGGKTSKRQLLSIP-KLEDAHHAGTKSGSECTLILTEGDSAKALAVAGLEVIGRAR 465 Query: 441 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPD---KLRYHSIIIMT 497 + PL+GK+LNV +A +M + EV L +G + + KLRY +++MT Sbjct: 466 YGVFPLRGKLLNVREAAVSQMAKNAEVTALCAIIGLDFDKTYETIEERRKLRYGKVMLMT 525 Query: 498 DADVDGSHIRTLLLTFFYRQMPEIVE-------------RGHVYIAQPPLYKVKKGKQEQ 544 D D DGSHI+ L++ FF P +++ + PL K K + Sbjct: 526 DQDTDGSHIKGLVMNFFRYFWPNLLKPPVDLQVNDEDETPPFLSSFVTPLLKASKKSSKT 585 Query: 545 YIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKA 604 +M +Y+ A + G + + Sbjct: 586 GTLSFYSMAEYKKWRGSIEAEDFKKWTVKYYKGLGTSTPAEAREYFSAFNDHFRPFLWNS 645 Query: 605 MLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIV 664 + + +D + V S L + G+ ++ N E F Sbjct: 646 DIDGELLDMVFDGERAADRRAWILDVYDETSNLLNDPSAGNNVSYEDFINKEMIHFSNAD 705 Query: 665 RVRTH--GVDTDYPLDHEFITGGEYRRICTLGE 695 +R+ +D P + + R++ + + Sbjct: 706 NIRSIPSAIDGLKPSQRKVLYACFKRKLKSEIK 738 >UniRef50_P41001 DNA topoisomerase 2 n=10 Tax=Eukaryota RepID=TOP2_PLAFK Length = 1398 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 145/756 (19%), Positives = 274/756 (36%), Gaps = 109/756 (14%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTD----------------------DGTGLHHM 39 N + ++ + RP YIG + GL+ + Sbjct: 3 KNKTIEERYQKKSQIEHILLRPDTYIGSVEMHTQLLWVWNKEKNRMVQKNITYVPGLYKI 62 Query: 40 VFEVVDNAID------EALAGHCKEIIVTIHADN-SVSVQDDGRGIPTGIHPEEGVSAAE 92 E++ NA D E I + I+ +N +SV +DG GIP IH E + Sbjct: 63 FDEIIVNAADVKAREKEKSENPMTCIKIEINKENKRISVYNDGEGIPVDIHKEMNIYVPH 122 Query: 93 VIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELV--IQREGKIHRQIYEHGVP 150 +I L +DD +++GG +G G + N S++ + K + + + Sbjct: 123 MIFGELLTSDNYDDAEDRITGGRNGFGAKLTNIFSKEFIVQCGDSSRKKEFKMTWSDNMS 182 Query: 151 Q-APLAVTGETEKTGTMVRFWPSLETFT--NVTEFEYEILAKRLRELSFLNSGVSIRLRD 207 + + + K V F P L F + + +L KR+ +L+ S V + L Sbjct: 183 KFSEPHIKNYNGKDYVKVTFKPDLNKFGMTEMDDDIESLLFKRVYDLAGTCS-VRVYLNG 241 Query: 208 KRDGKEDHFHYEGGIKAFVE----------------------------------YLNKNK 233 +R +D ++ + +++ ++ + Sbjct: 242 QRLAVKD---FKSYVDLYLKDNSNDNKNNKGQNDNNNNNNNNNDENANQNNDNLDVSLSN 298 Query: 234 TPIHPNIF--------------YFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGG 279 P + E+ + +DG Q F N+I GG Sbjct: 299 EPADGTPTKNNNNNNNNNDEDEIVKIHEKQHRWEIVVSKSDGSQFQQVSFVNSICTTKGG 358 Query: 280 THLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDK 339 +H+ + L++ K K + R L V+ + +P F SQTK+ Sbjct: 359 SHVNYIVEQL---LSSLSKKANAKNKGGMEIKSGHIRNHLWVFVNCLIVNPTFDSQTKET 415 Query: 340 LVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALD 399 L + VK + +++ +L++P + I++ A+A+ ++ + K Sbjct: 416 LTTKPVKFGSKCILSDKTINNVLKSPILSNILLW---AQAKAQVELKKKMKAGSSKARER 472 Query: 400 LAGLPG--KLADCQERDPALSELYLVEGDSAGGSAKQGR---NRKNQAILPLKGKILNVE 454 + G+P D + L L EGDSA S G R + PLKGK+LNV Sbjct: 473 IIGIPKLEDANDAGSKYSQECTLILTEGDSAKTSCLAGLSIVGRDKYGVFPLKGKLLNVR 532 Query: 455 KARFDKMLSSQEVATLITALGCGI-GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTF 513 A F +++ ++E+ + +G I +++ + LRY S++IMTD D DGSHI+ LL+ Sbjct: 533 DASFKQLMDNKEIQNIFRIMGLDITDKNKDDIKGLRYGSLMIMTDQDYDGSHIKGLLINM 592 Query: 514 FYRQMPEIVER-GHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASA 572 ++ P +++ G + P+ KV+KG QE +Q++ + L G + Sbjct: 593 IHKFWPSLLKHKGFLSEFVTPIVKVQKGSQEYSFFTIAEYEQWKENTNLLGWKIKYYKGL 652 Query: 573 PALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNA 632 ++ S+ + M R ++ ++ + E + Sbjct: 653 GTSTDREFKQYFSDIKNHKIMFLWTGDRDGDSI--DMAFSKKRIED--------RKLWLQ 702 Query: 633 LVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRT 668 + + + N E + R+ Sbjct: 703 NFILGSYVDHKEKDLSYYDFVNKELIYYSRYDTERS 738 >UniRef50_B7XIW3 DNA topoisomerase 2 n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XIW3_ENTBH Length = 1159 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 145/724 (20%), Positives = 265/724 (36%), Gaps = 69/724 (9%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTDD----------------------GTGLHHMVFEVV 44 + + + RP YIG + GL+ + E++ Sbjct: 6 EEIYQKKTPKEHILLRPDTYIGSVEIDTQSAFVWDNMQEKIVLKNVKFAPGLYKIFDEIL 65 Query: 45 DNAIDEALAGH-CKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGK 103 NA D I V I+ SVS+++DG GIP IH +E V E+I L Sbjct: 66 VNAADNKQRDPRMTYIKVYINEM-SVSIENDGNGIPIEIHQKEQVYVPELIFGHLLTSSN 124 Query: 104 FDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQ-APLAVTGETEK 162 ++DN KV+GG +G G + N S E+ +G+ + Q++++ + ++ + K Sbjct: 125 YNDNEKKVTGGRNGYGAKLCNIFSVHFEVETVSKGRKYSQVFKNNMEIIGKPTISAYSGK 184 Query: 163 TGTMVRFWPSLETFTNV--TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEG 220 T + F P + F I KR+ ++ I L DK+ + Sbjct: 185 DYTKITFVPDFKRFGMSLFDSDIISIFYKRVYDMCATVKNTEIYLNDKKLMINN------ 238 Query: 221 GIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGT 280 +K + + + T+K E+A D Q F N+I GGT Sbjct: 239 -LKEYAQLYLSHD-------VKLVTKKINDRWEIACASTDE-QFMQVSFVNSICTSKGGT 289 Query: 281 HLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKL 340 H+ + L + + K + + + L ++ + +P F SQTK+ L Sbjct: 290 HVNHVLDQLMDPLISAVKKR----DKTLVLKPLNVKNNLFLFINALIENPIFDSQTKENL 345 Query: 341 VSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDL 400 + Q + + + +++N ++ KII ++ ++A + + + Sbjct: 346 TLKSSAFGSKCQPIDDIIKDIIKNTD----IIDKIITFSKIKQAVLLKKTDGVKTTKIVG 401 Query: 401 AGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGR---NRKNQAILPLKGKILNVEKAR 457 + + L L EGDSA A G R + PL+GK+LNV +A Sbjct: 402 IPKLEDANFAGTKRSSECTLILTEGDSAKTLAVAGLSVVGRDKYGVFPLRGKLLNVREAS 461 Query: 458 FDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQ 517 +++ + E++ + LG G+ + LRY I+IMTD D DGSHI+ L++ F Sbjct: 462 NKQIMDNAEISAIKKILGLQHGKTYTDTTSLRYGHIMIMTDQDFDGSHIKGLIINFLDYF 521 Query: 518 MPEIVER-GHVYIAQPPLYKVKKGKQEQYIKDDEAMDQY---QISIALDGATLHTNASAP 573 P +++ G + P+ + K K++ +++ I G + Sbjct: 522 FPSLLKILGFLQEFITPIVRATKKKEKYDFFTIPEYEKFKQQIEQIKDSGWVIKYYKGLG 581 Query: 574 ALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNAL 633 + ++ + K +E L +L + + + Sbjct: 582 TSTTDDAKQYFNNLKLHVKTFIPVE--LEDRELIDLAFNKKKADD--------RKEWIGR 631 Query: 634 VSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTH--GVDTDYPLDHEFITGGEYRRIC 691 +Q S N E LF +R+ +D P + I R + Sbjct: 632 FEPGTFLDQSMSNITVRDFVNKELILFSMADNIRSIPSVIDGLKPGQRKVIFSCFKRNLK 691 Query: 692 TLGE 695 T + Sbjct: 692 TEIK 695 >UniRef50_A7TEE2 DNA topoisomerase 2 n=1 Tax=Vanderwaltozyma polyspora DSM 70294 RepID=A7TEE2_VANPO Length = 1404 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 138/706 (19%), Positives = 265/706 (37%), Gaps = 68/706 (9%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTDD----------------------GTGLHHMVFEVV 44 S + + L+ + KRP YIG + GL + E++ Sbjct: 9 SERYQKISQLEHILKRPDTYIGSVEVQEQEQWIYNVENESLEEKQVKIVPGLFKIFDEIL 68 Query: 45 DNAIDEALAGH-CKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGG 102 NA D + K I V I+ + N + +++DG+GIP IH +E + E+I L Sbjct: 69 VNAADNKVRDPSMKRIDVNINPEENLIEIKNDGKGIPIEIHDKEKIYIPELIFGHLLTSS 128 Query: 103 KFDDNSYKVSGGLHGVGVSVVNALSQKL--ELVIQREGKIHRQIYEHGVPQAPLAVTG-- 158 +DD+ KV+GG +G G + N S + E GK + Q +E + Sbjct: 129 NYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADPSTGKKYIQRWEDNMNTCHPPKITSY 188 Query: 159 ETEKTGTMVRFWPSLETFT--NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHF 216 + + T V F P L+ F + + ++ +R+ +++ +++ L K + Sbjct: 189 KNSTSYTKVSFKPDLKRFKMEKLDDDVVGVMRRRVYDINGSVRDINVYLDGKPLKIRN-- 246 Query: 217 HYEGGIKAFVEYLNKNKTPIHPN------IFYFSTEKDGIGVEVALQWNDGFQENIYCFT 270 ++ ++ +++ L K K EK EVA ++ F Sbjct: 247 -FKSYVELYLKSLEKKKLTESGESTEDLQTPTILYEKVNDRWEVAFSSSEA-SFQQVSFV 304 Query: 271 NNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDP 330 N+I GGTH+ + + ++ + K+ + + ++ + +P Sbjct: 305 NSIATTSGGTHVNYITDQIVKKVSEAIKKKSKKTVK-----PFQIKNNMFIFINSLIENP 359 Query: 331 KFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRARE 390 F+SQTK++L + + +++ + +++ KI+D A + + Sbjct: 360 AFTSQTKEQLTTRVRDFGSKCELSNVFINKIMKTD-----FFDKILDVANQNDQNALKKS 414 Query: 391 MTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGR---NRKNQAILPLK 447 RK + ++ L L EGDSA A G R PL+ Sbjct: 415 DGTRKIRITEYPKLEDANKAGTKEGHKCTLILTEGDSALSQAVLGLTVVGRDYFGCYPLR 474 Query: 448 GKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIR 507 GK+LNV +A D++ + E+ + +G + + LRY ++IMTD D DGSHI+ Sbjct: 475 GKMLNVREASADQINKNAEIEAIKKIMGLQHKKKYEDTKSLRYGHLMIMTDQDHDGSHIK 534 Query: 508 TLLLTFFYRQMPEIVERG-HVYIAQPPLYKVKKG---KQEQYIKDDEAMDQYQISIALDG 563 L++ F P ++ + P+ KVK KQ + ++++ + Sbjct: 535 GLIINFLETSFPGLLNIPEFLQEFITPIIKVKISKPRKQTIQFYNIPDYEKWRDEEGQNC 594 Query: 564 ATLHTNASA-PALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSD 622 H G+ + ++ + K+ +++ + L EL + + Sbjct: 595 TWKHKYYKGLGTSLGQEFREYFADLDRHLKIFHQL--QEDDKKLIELAFSKKKADD---- 648 Query: 623 EQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRT 668 + + + N E LF VR+ Sbjct: 649 ----RKEWLRQYEPGTVLDPNLDAIPISDFINKELILFSLADNVRS 690 >UniRef50_Q9X3Y5 DNA gyrase subunit B (Fragment) n=740 Tax=cellular organisms RepID=GYRB_BACMY Length = 404 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 237/405 (58%), Positives = 301/405 (74%), Gaps = 2/405 (0%) Query: 99 HAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTG 158 HAGGKFD YKVSGGLHGVG SVVNALS +LE+ + R+GKIH Q YE GVP A L V G Sbjct: 1 HAGGKFDGGGYKVSGGLHGVGASVVNALSTELEVFVHRDGKIHYQKYERGVPAADLRVIG 60 Query: 159 ETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK-EDHFH 217 ET++TGT+ RF P E FT TE+E++ LA R+REL+FLN + + + DKR+ K + FH Sbjct: 61 ETDRTGTITRFKPDSEIFTETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFH 120 Query: 218 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRD 277 YEGGIK++VE+LN++K PIH Y KDGI VEVALQ+N+G+ +IY FTNNI + Sbjct: 121 YEGGIKSYVEHLNRSKQPIHEEPVYVDGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYE 180 Query: 278 GGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTK 337 GGTH GF+ A+TR +N Y K K A + TG+D REGL A+VS+K P+P+F QTK Sbjct: 181 GGTHEVGFKTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTK 240 Query: 338 DKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGA 397 KL +SE ++ E +E ++LLENP A+ ++ K AARAR AA++ARE+TRRK A Sbjct: 241 TKLGNSEARTITESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSA 300 Query: 398 LDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 457 L+++ LPGKLADC +DPA+SE+Y+VEGDSAGGSAKQGR+R QAILPLKGKI+NVEKAR Sbjct: 301 LEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKAR 360 Query: 458 FDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVD 502 DK+LS+ EV T+ITA+G IG D + +K RYH +IIMTDADVD Sbjct: 361 LDKILSNDEVRTIITAIGTNIGGD-FAIEKARYHKVIIMTDADVD 404 >UniRef50_D2UZM0 DNA topoisomerase II n=1 Tax=Naegleria gruberi RepID=D2UZM0_NAEGR Length = 1457 Score = 476 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 159/757 (21%), Positives = 280/757 (36%), Gaps = 83/757 (10%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTG-----------------------LHH 38 N + + + RP Y+G + G L+ Sbjct: 46 KNKTVEEIYQKKSLREQILLRPDTYVGSVNMQEGEDMWIWDDEDKRMKMKTIKFVPALYK 105 Query: 39 MVFEVVDNAIDEALAGH-CKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMT 96 + E++ NA D ++ C +I VTI+ + N +SV ++G GIP IH E + +I Sbjct: 106 IFDEILVNAADHSVRDETCNKIKVTINPEQNEISVYNNGAGIPVKIHAEHKIYVPTMIFG 165 Query: 97 VLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELV--IQREGKIHRQIYEHGVPQAPL 154 L FDD +V+GG +G G + N S+K + E K RQ + + + Sbjct: 166 HLLTSSNFDDTQKRVTGGRNGYGAKLTNIFSEKFIVETVDSEEKKKFRQTWTQNMEKEEE 225 Query: 155 AVTGETEK--TGTMVRFWPSLETFT--NVTEFEYEILAKRLRELSF-LNSGVSIRLRDKR 209 K + T + F+P L F + + +L KR+ +L+ L +G+ I L K+ Sbjct: 226 PKITTCSKAESYTEITFYPDLSKFGMDKLDDDIVSLLKKRVYDLAGTLKTGIGIYLNGKK 285 Query: 210 DGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCF 269 F K +V+ +K I YF DG +V + ++G F Sbjct: 286 ITGMKTF------KDYVKLYTIDK-----EIHYFE---DGKRWKVGITLSEG-SMQQVSF 330 Query: 270 TNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPD 329 N+I GG H+ ++ + + K+ + + L VS + + Sbjct: 331 VNSICTTKGGKHVDHIVNQVSDNIKKALVKKN------NTIKPAYIKNQLWVFVSSLIIN 384 Query: 330 PKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAR 389 P F SQ+K+ L +S + +++E + + + ++A ++ A + + Sbjct: 385 PSFDSQSKETLTTSMKDFGSKCKLDEAFLKKVTKMASEA------VLKYADFKSEKALNK 438 Query: 390 EMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGR---NRKNQAILPL 446 + +K L D ++ L L EGDSA A G R + PL Sbjct: 439 KSGTKKSRLTGISKLDDANDAGSKNSEKCTLILTEGDSAKALAVGGLSVVGRDYYGVFPL 498 Query: 447 KGKILNVEKARFDKMLSSQEVATLITALGCGIGRDE--YNPDKLRYHSIIIMTDADVDGS 504 KGK LNV + DK++ ++E++TL LG + + LRY SI+IM D D DGS Sbjct: 499 KGKPLNVRDCKLDKVVKNEEISTLAKILGLKFDKTYTKEDIKSLRYGSIMIMADQDHDGS 558 Query: 505 HIRTLLLTFFYRQMPEIVE-RGHVYIAQPPLYKVKKG--KQEQYIKDDEAMDQYQIS-IA 560 HI+ LL+ F ++ P +++ G + P+ K K+ + ++ Sbjct: 559 HIKGLLINFIHKFWPSLLKIPGFLKEFITPIVKATNNRTKKAVTFFSIPEYETWKEGLSD 618 Query: 561 LDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADL 620 G T+ ++ S + QK + +T Sbjct: 619 TKGWTIKYYKGLGTSTAPEAKEYFSNMSLHQKRFKY-----------DTDCDKKITSVFS 667 Query: 621 SDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTH--GVDTDYPLD 678 + E + + + + E LF R+ VD P Sbjct: 668 KAATDERKEWLNNHQEGTYIDHSKKEISYTDFIDKELILFSKADCKRSIPSIVDGLKPGQ 727 Query: 679 HEFITGGEYRRICTLGE--KLRGLLEEDAFIERGERR 713 + + R + + +L G + E + GE Sbjct: 728 RKILFSCFKRNLKKEIKVAQLAGYVSEQSAYHHGEDS 764 >UniRef50_A8Q6X4 DNA topoisomerase 2 n=1 Tax=Brugia malayi RepID=A8Q6X4_BRUMA Length = 1178 Score = 475 bits (1221), Expect = e-132, Method: Composition-based stats. Identities = 152/752 (20%), Positives = 271/752 (36%), Gaps = 74/752 (9%) Query: 8 SSIKVLKGLDAVRKRPGMYIGDT-----------------------DDGTGLHHMVFEVV 44 + L L + RP YIG T GL + E++ Sbjct: 63 EKYQRLTPLKHILYRPDSYIGPTFLSDEQPIYVYDDITKQILKKEARIVPGLLKIFDEIL 122 Query: 45 DNAIDEALAGH-CKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGG 102 NA D I + I + N++S+ ++GRGIP IHP EG+ +I L Sbjct: 123 VNAADNKRRDPQMTTIAINIDKERNTISIWNNGRGIPVEIHPREGIYVPTMIFGTLFTSS 182 Query: 103 KFDDNSYKVSGGLHGVGVSVVNALSQKLELVI--QREGKIHRQIYEHGVPQAPLAVTGET 160 +DD+ K+ GG +G G + N S + + ++ G Q + + + + + Sbjct: 183 NYDDSELKIVGGRNGFGAKLCNIFSTEFSVETCTKQSGLRFFQCWRNNMNDVDDPIISDA 242 Query: 161 EK---TGTMVRFWPSLETFTNVT--EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDH 215 T V F P L F T E +++ +R+ +++ GV++ L + Sbjct: 243 STNASDYTCVTFKPDLSKFKLSTLDEDTIQVMIRRIVDIAGTLDGVNVFLNGTKIEV--- 299 Query: 216 FHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQ 275 G K +V+ + N S ++A+ +D N F NNI Sbjct: 300 ----SGFKDYVKLFSTYTGESVENSTVPSYCSVNDRWQIAVARSDT-GYNHISFVNNINT 354 Query: 276 RDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQ 335 GG H+ + L +++ K + + L V+ + +P F SQ Sbjct: 355 LKGGRHVDYIVNQIVSRLKHEINQRYGCDKF---ISAHQIKNRLHIFVNSLIENPAFESQ 411 Query: 336 TKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRK 395 +K+ L +S + E E +++ ++ I R + Sbjct: 412 SKEYLTTSVKNFGSTCIVPESFYENFIKDSDIIHHLLCDISQQHTTSLNRSMNRSL---- 467 Query: 396 GALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGR---NRKNQAILPLKGKILN 452 DL+ L AD ++ L + EGDSA A G RK + P++GK+ N Sbjct: 468 --WDLSKLEDA-ADAGTKNGCNCTLIITEGDSAKALAVAGLAVIGRKQYGVFPIRGKLTN 524 Query: 453 VEKARFDKMLSSQEVATLITALGCGIGRDE---YNPDKLRYHSIIIMTDADVDGSHIRTL 509 V + + E++ L+ LG G + LRY ++IMTD D DGSHI+ L Sbjct: 525 VRGMDAKMAVENAEISALVRILGLKFGENYSSHEKLKSLRYGRLLIMTDQDPDGSHIKGL 584 Query: 510 LLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALD-GATLHT 568 ++ F + P +++ +V PL K K+G + ++++ ++ Sbjct: 585 IVNFLHVYWPSLLKANYVSYFITPLLKAKRGSDIKSFYSTADYEKWRAENPDSVKYSIKY 644 Query: 569 NASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTR 628 + ++ N +ER + I ++ A ++ + Sbjct: 645 YKGLGTSS----------AKEAREYFNDIERHTVNFIYDGKISDESIELAFAKNKADDRK 694 Query: 629 -WVNALVSELNDKEQHGSQWK--FDVHTNAEQNLFEPIVRVRT--HGVDTDYPLDH--EF 681 W+ L ++ + F N E + + R+ + VD P F Sbjct: 695 VWIAESSKLLLSTAVDSNRNQKTFSEFVNEELVEYSQLDLRRSLPNVVDGLKPSQRKVLF 754 Query: 682 ITGGEYRRICTLGEKLRGLLEEDAFIERGERR 713 G Y R +L G + + GE Sbjct: 755 TMFGRYERGEIRVSQLAGAVSQYCGYHHGEES 786 >UniRef50_P06786 DNA topoisomerase 2 n=27 Tax=Fungi/Metazoa group RepID=TOP2_YEAST Length = 1428 Score = 474 bits (1220), Expect = e-132, Method: Composition-based stats. Identities = 145/732 (19%), Positives = 273/732 (37%), Gaps = 63/732 (8%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTDD----------------------GTGLHHMVFEVV 44 S + + L+ + KRP YIG + GL + E++ Sbjct: 9 SDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEIL 68 Query: 45 DNAIDEALAGH-CKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGG 102 NA D + K I V IHA+ +++ V++DG+GIP IH +E + E+I L Sbjct: 69 VNAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSS 128 Query: 103 KFDDNSYKVSGGLHGVGVSVVNALSQKL--ELVIQREGKIHRQIYEHGVPQAPLAVTGET 160 +DD+ KV+GG +G G + N S + E G+ + Q +E+ + Sbjct: 129 NYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPPKITSY 188 Query: 161 EK--TGTMVRFWPSLETFT--NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHF 216 +K + T V F P L F + ++ +R+ +++ +++ L K + Sbjct: 189 KKGPSYTKVTFKPDLTRFGMKELDNDILGVMRRRVYDINGSVRDINVYLNGKSLKIRN-- 246 Query: 217 HYEGGIKAFVEYL-------NKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCF 269 ++ ++ +++ L N +I E+ EVA +D F Sbjct: 247 -FKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYERINNRWEVAFAVSD-ISFQQISF 304 Query: 270 TNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPD 329 N+I GGTH+ + + E KK K S + + ++ + + Sbjct: 305 VNSIATTMGGTHVNYITDQIVKK-----ISEILKKKKKKSVKSFQIKNNMFIFINCLIEN 359 Query: 330 PKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAR 389 P F+SQTK++L + ++ +++ ++ + A A E + Sbjct: 360 PAFTSQTKEQLTTRVKDFGSRCEIPLEYINKIMKTDLATRMF-----EIADANEENALKK 414 Query: 390 EMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGR---NRKNQAILPL 446 RK + ++ L L EGDSA A G R PL Sbjct: 415 SDGTRKSRITNYPKLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPL 474 Query: 447 KGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHI 506 +GK+LNV +A D++L + E+ + +G + + LRY ++IMTD D DGSHI Sbjct: 475 RGKMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMIMTDQDHDGSHI 534 Query: 507 RTLLLTFFYRQMPEIVE-RGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGAT 565 + L++ F P +++ +G + P+ KV K + M Y+ + Sbjct: 535 KGLIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEKWREEESHK 594 Query: 566 LHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQT 625 G +L ++ + ++R + + + A + Sbjct: 595 FTWKQKYYKGLGTSLA------QEVREYFSNLDRHLKIFHSLQGNDKDYIDLAFSKKKAD 648 Query: 626 VTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRT--HGVDTDYPLDHEFIT 683 + + + N E LF +R+ + +D P + + Sbjct: 649 DRKEWLRQYEPGTVLDPTLKEIPISDFINKELILFSLADNIRSIPNVLDGFKPGQRKVLY 708 Query: 684 GGEYRRICTLGE 695 G + + + + Sbjct: 709 GCFKKNLKSELK 720 >UniRef50_A3DC64 DNA topoisomerase (ATP-hydrolyzing) n=11 Tax=Bacteria RepID=A3DC64_CLOTH Length = 661 Score = 470 bits (1210), Expect = e-131, Method: Composition-based stats. Identities = 180/655 (27%), Positives = 314/655 (47%), Gaps = 39/655 (5%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 + Y ++SIK LKG + VR RP + G D G H FE++ N+IDEA G K I V Sbjct: 9 AERYGNTSIKSLKGAERVRLRPAVIFGS-DGIEGCQHSFFEILSNSIDEAREGFGKVIEV 67 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNS---YKVSGGLHGV 118 T D S+ V+D GRGIP + E E++ L+AGGK+ +NS Y+ S GL+G+ Sbjct: 68 TRFKDRSIMVKDYGRGIPLDYNENEKRYNWELVFCELYAGGKYKNNSGENYEFSLGLNGL 127 Query: 119 GVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGET-EKTGTMVRFWPSLETFT 177 G S+ +++ + R+G + +E G L E TGT++++ P LE FT Sbjct: 128 GSCATQYSSEYMDVTVFRDGMRYDLHFEKGENVGGLKKQKWDYESTGTIIKWRPDLEVFT 187 Query: 178 NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIH 237 ++ E + LR+ + +N+G+ L D+ + + YE GI +++ ++ +K Sbjct: 188 DIN-IPLEYYTEVLRKQAVVNAGLKFILYDEESDRVFEYCYENGIVDYIKEVSGDKA--F 244 Query: 238 PNIFYFSTEKDGIGVE----------VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRA 287 +I Y+ T G E +A +N+ + + N+ GG + Sbjct: 245 TDIQYYETSTRGRDREDKPEYKLKMQIAFCFNNEVN-LLEYYHNSSFLEYGGAPDKAVKN 303 Query: 288 AMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKS 347 A ++ ++ +G K + T D ++ LI V + + +QTK + + ++ Sbjct: 304 AFVYVIDKFLKSQGKYNKDESRITFQDIQDSLILVSNSFSTITSYENQTKKSITNKFIQE 363 Query: 348 AVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRK--GALDLAGLPG 405 A+ + + E L Y +EN + ++ +++ R+RE A + R ++K G +D++ Sbjct: 364 AMTEFLKEKLEVYFIENKVECTKILEQVLVNKRSRETAEKTRVNIKKKLSGNVDISNRVK 423 Query: 406 KLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQ 465 K DC+ +D E+Y+VEGDSA GS K R+ + QAI+P++GKILN KA +D + ++ Sbjct: 424 KFVDCRSKDVNKREIYIVEGDSALGSCKLARDAEFQAIIPVRGKILNCLKADYDSIFKNE 483 Query: 466 EVATLITALGCGIGRDE--------YNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQ 517 + L+ LGCG+ ++ + LR+ III TDADVDG IRTL+L YR Sbjct: 484 IIVDLLKVLGCGVEIKSKHNRELSTFDLNNLRWSKIIICTDADVDGYQIRTLILAMLYRL 543 Query: 518 MPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAG 577 +P +++ G V+IA+ PL++++ + + D+ ++ + L + Sbjct: 544 VPTLIQVGKVFIAESPLFEIRTKDKTYFAYTDKEKNEIVSKLKGKYTILRSKGLGEN--- 600 Query: 578 EALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNA 632 Q +N RR + + ++ + L D + Sbjct: 601 -------DPDMMWQTTMNPETRRLIQVVPDDIKKTEEFFDLFLGDNLPGRKSYIE 648 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 57/320 (17%), Positives = 118/320 (36%), Gaps = 30/320 (9%) Query: 511 LTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNA 570 +T + Q + + + A K K + +I++ + + ++ + T Sbjct: 345 ITSYENQTKKSITNKFIQEAMTEFLKEKL--EVYFIENKVECTKILEQVLVNKRSRETAE 402 Query: 571 SAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWV 630 + L V N +K ++ + K + + L L+ + + Sbjct: 403 KTRVNIKKKLSGNVDISNRVKKFVDCRSKDVNKREIYIVEGDSALGSCKLARDAEFQAII 462 Query: 631 NALVSELNDKEQHGS------------------------QWKFDVHTNAEQNLFEPIVRV 666 LN + + + + I+ Sbjct: 463 PVRGKILNCLKADYDSIFKNEIIVDLLKVLGCGVEIKSKHNRELSTFDLNNLRWSKIIIC 522 Query: 667 RTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIE-RGERRQPVASFEQALDW 725 VD I YR + TL + + + E E R + + A ++ + Sbjct: 523 TDADVDGYQI--RTLILAMLYRLVPTLIQVGKVFIAESPLFEIRTKDKTYFAYTDKEKNE 580 Query: 726 LVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAV 785 +V + + +I R KGLGE +P+ +W+TTM+PE+RR+++V D ++ F +GD + Sbjct: 581 IVSKLKGKYTILRSKGLGENDPDMMWQTTMNPETRRLIQVVPDDIKKTEEFFDLFLGDNL 640 Query: 786 EPRRAFIEENALKAAN-IDI 804 R+++IEE+ K + ID+ Sbjct: 641 PGRKSYIEEHGHKYLDMIDV 660 >UniRef50_D2V5K5 DNA topoisomerase II n=1 Tax=Naegleria gruberi RepID=D2V5K5_NAEGR Length = 1135 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 156/757 (20%), Positives = 287/757 (37%), Gaps = 75/757 (9%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDT---------------------DDGTGLHHMVFEVVD 45 + ++ V +RP Y+G T D L+ ++ E++ Sbjct: 11 EQQYQKKTPIEHVLERPDTYVGSTERMKKKLFCLDSVNNIKLKEVDFIPALYRIIDEILV 70 Query: 46 NAIDEALA--GHCKEIIVTIH-ADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGG 102 NA+D H E+ VTI A N + ++++G+ +P +H E + E++ L G Sbjct: 71 NAVDNHHRKGTHTNELRVTIDEAKNWIHIRNNGKSVPVEMHKIEKIYVPELVFGNLLTGS 130 Query: 103 KFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRE-GKIHRQIYEHGVPQAPLAVTGETE 161 FDDN K +GG +G G + N S + I G + Q ++ + Q E + Sbjct: 131 NFDDNEVKFTGGRNGYGAKLANIFSTDFTIEIMDHKGTHYIQNWKKNMSQISTPTIVENK 190 Query: 162 ---KTGTMVRFWPSLETFTNV----TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKED 214 + V F P + F + ++L +R+ +LS N +++ L DK+ ++ Sbjct: 191 QKTEPYIQVSFHPDFKKFQSTGLNKELNMIDLLKRRIYDLSACNPKLNVYLNDKKVEVDN 250 Query: 215 HFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIP 274 K +V+ +N + F + G E+A+ + G + N F N+I Sbjct: 251 -------FKEYVKLFYQNNSSGEHPEKMFVHKHICDGWEIAIGASVGEEFNQISFVNSIA 303 Query: 275 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 334 GG+H+ ++ ++ Y+ K +++ + R + ++ + +P F S Sbjct: 304 TVQGGSHVNFVLNQLSTKISEYIAK--TYTDLQLTISPYMVRNHITLFINSLIENPTFDS 361 Query: 335 QTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRR 394 QTK+ L + + A + ++ L + + IID A +++ +++ Sbjct: 362 QTKETLTTKSISFAQKVVISNDLINSIANH--------TPIIDNIIAFANYKQSSASSKK 413 Query: 395 KGALDLAGLPGKLADCQ---ERDPALSELYLVEGDSAGGSAKQGR---NRKNQAILPLKG 448 + L KL D L L EGDSA A G R + PLKG Sbjct: 414 FKKRESKLLIPKLDDANLAGTNRSMECVLILTEGDSAKALAISGLSVVGRDRFGVFPLKG 473 Query: 449 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYN----PDKLRYHSIIIMTDADVDGS 504 K+LNV +A D++ +QE+ L LG + +LRY +++M D D DGS Sbjct: 474 KLLNVREASADQIRDNQEIQNLKKILGLDDVSKTDSFEELTKRLRYGKVMLMCDQDHDGS 533 Query: 505 HIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGA 564 HI+ LLL + PE++ V P+ KV KG + + Sbjct: 534 HIKGLLLNMIHFFYPELLRNNFVDEFITPIIKVSKGSDVKSFFSIPEFQNW--------- 584 Query: 565 TLHTNASAPALAGEALEKLVSE--YNATQKMINRMERRYPKAMLKELIYQPTLTEADLSD 622 + + K + + + ++R + +P + A D Sbjct: 585 WTKVPENEKNRWNQKYYKGLGTNSSKEAKDYFSNLKRHVIALQYDD-DSEPNIELAFSKD 643 Query: 623 EQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTH--GVDTDYPLDHE 680 + A + + + + N E LF +R+ VD P + Sbjct: 644 LANARKSWVASLKDGTFLDTTNGKVTITDFINNELILFSNQNNIRSIPSIVDGLKPSQRK 703 Query: 681 FITGGEYRRICTLGE--KLRGLLEEDAFIERGERRQP 715 + R + + +L G + E + GE+ Sbjct: 704 ILFACLKRDLKDEIKVAQLAGYVSEHSAYHHGEQSLY 740 >UniRef50_Q4UIX0 DNA topoisomerase II, putative n=2 Tax=Theileria RepID=Q4UIX0_THEAN Length = 922 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 233/691 (33%), Positives = 342/691 (49%), Gaps = 115/691 (16%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 + Y S I VL+GL+AVRKRPGMYIG+T + G+H +++EV+DN++DE LAG C I V Sbjct: 103 TGEYSSDDIIVLEGLNAVRKRPGMYIGNTGE-RGVHQLLYEVLDNSVDEYLAGFCNRITV 161 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDD--------------- 106 ++ D SV V D+GRGIP I P+ G S E ++TVLH+GGKF D Sbjct: 162 SLMKDGSVEVSDNGRGIPCDISPKTGKSGLETVLTVLHSGGKFQDIFPPNSTSMSSEDQN 221 Query: 107 ---------------NSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQ 151 Y+ S GLHGVG+SVVNALS+ L + + + K + G Sbjct: 222 DLKSRKKGEKEHEEKKVYEYSSGLHGVGLSVVNALSELLIVDVYKGPKSYHIELSKGNIV 281 Query: 152 APLAVTGETEKT----------GTMVRFWPSLE-TF------------------------ 176 PLA E E T GT +RF P + F Sbjct: 282 KPLAEFSEPETTEKSNNNLKRYGTTIRFLPDYKNIFKTHHQHTETEKEEDYDTTTNKSGL 341 Query: 177 -----TNVTEFEYEILAKRLRELSFLNSGVSIRLRDKR------DGKEDHFHYEGGIKAF 225 F E++ R +ELS+LN G+SI+L D R + E+ + GG ++F Sbjct: 342 DTKCSGCKNGFILELIKTRAKELSYLNPGLSIKLVDYRITDENNEPWEETYRNTGGTRSF 401 Query: 226 VEYLNKNKTPIHPNI--FYFSTEKDGIGVEVALQWN-DGFQENIYCFTNNIPQRDGGTHL 282 +E L K+KTP++ I I VEV+ W+ + + I + NN+ GTH+ Sbjct: 402 LEELIKDKTPLYKPISYITIKGVISNINVEVSFSWSLESYTALIKGYANNVSTIA-GTHI 460 Query: 283 AGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 342 GF+ ++TR +N + K GY K G+ REG+ AV+SVK+ +F QTK KL + Sbjct: 461 DGFKISITRCVNGLLKKYGYFKGNVKPLNGEFIREGMTAVISVKLTGAEFDGQTKTKLGN 520 Query: 343 SEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAG 402 + VK+ E+ +NE L N + K A +A +AAR A+++ R+K + ++ Sbjct: 521 ALVKTVTEKIVNEQFTNILENNKELLLAIHNKSQAAKKAFDAARTAKDLIRQKSSSIVSN 580 Query: 403 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR-FDKM 461 + GKL +C +EL++VEG+SA G+AKQ RNR+ QA+LPLKGKILN+EK K+ Sbjct: 581 ISGKLTECSSSKVENNELFIVEGESAAGNAKQARNRQFQAVLPLKGKILNIEKITDNSKV 640 Query: 462 LSSQEVATLITALGCGIGRDEY-------------------------------NPDKLRY 490 L +Q++ L+ ++G I + + KLRY Sbjct: 641 LENQQIQLLMNSIGISINPVTWRQNDLTEGTHMAMDRFIEMNSSKLTRKQIWLDLSKLRY 700 Query: 491 HSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK--KGKQEQYIKD 548 II++TDADVDGSH+++LLL YR P + G VY+A PPLY++ + K+ Y Sbjct: 701 GKIILLTDADVDGSHLKSLLLCLLYRLCPSLYLHGRVYVASPPLYRITNLRNKKYIYSWS 760 Query: 549 DEAMDQYQISIALDGATLHTNASAPALAGEA 579 E + + + + T Sbjct: 761 QEHLLKTIKELNSKYSPKETTERVREKDNAD 791 Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 4/113 (3%) Query: 694 GEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWET 753 E++ E + I + E+ + ++ ++ + L IQR+KGLGEM QLWET Sbjct: 812 VEEIELKTELGSNITKDEKSDEL--DLYNINKSFSKNNKHLIIQRFKGLGEMMANQLWET 869 Query: 754 TMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEEN--ALKAANIDI 804 TMDP+ R + R+ V ++ LMG V+ R+ +I N A ++DI Sbjct: 870 TMDPKKRILKRIVVSQEPEISEIIRLLMGSDVQSRKQYIFNNSGAFNLEDLDI 922 >UniRef50_P90520 DNA topoisomerase 2, mitochondrial n=1 Tax=Dictyostelium discoideum RepID=TOP2M_DICDI Length = 1284 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 152/723 (21%), Positives = 294/723 (40%), Gaps = 54/723 (7%) Query: 23 PGMYIGDTD--DGTGLHHMVFEVVDNAIDEALAG-HCKEIIVTIHA-DNSVSVQDDGRGI 78 P YI GL + E++ NA D I V I+ +NS+S+ +DG+GI Sbjct: 158 PLTYIHPIKATYIPGLLKIYDEILVNAADNKKRDSKMSFIKVEINPNENSISIMNDGKGI 217 Query: 79 PTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELV--IQR 136 P +H E E++M L +G F+D+ KV GG +G G + N S++ + + Sbjct: 218 PVVMHQTENCYVVEMVMGNLMSGSNFNDSELKVVGGRNGFGAKLTNIFSKEFTVETVDKS 277 Query: 137 EGKIHRQIYEHGVPQAPLAVT---GETEKTGTMVRFWPSLETFTNVTEFE---YEILAKR 190 GK + Q + + + + GE E T + F P LE F + ++ +++ +R Sbjct: 278 SGKKYFQRWSNNMGDRSEPIITPIGEGESDYTKITFKPDLEKFKIKSLWDDNILQLMERR 337 Query: 191 LRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFY----FSTE 246 L +++ N+ + + L KR ++++ +K + +LN + Y F Sbjct: 338 LYDIAGCNTELMVTLNGKRLN----YNFQSYVKLYEHHLNNSTKREDNEEQYREESFEFG 393 Query: 247 KDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKA 306 + ++ + ++ Q F N+I GGTH+ + R + + K K + Sbjct: 394 EISPRWKIGIGLSETGQFTQVSFVNSINTVKGGTHVNFLADQIVRYVGEKLKK----KHS 449 Query: 307 KVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPT 366 + + + L V+ V +P F SQ+K+ L + + ++ E L ++N Sbjct: 450 DLEIRPMNIKHHLALFVNCLVDNPSFDSQSKETLTTKPMLFGSTPEIPESLLAQFVKNS- 508 Query: 367 DAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQER---DPALSELYLV 423 ++ ++ A ++ A + R+ L KL D L + Sbjct: 509 ---KIIERVAGWALMKQKADLIHSTSGRQSKTTLIKSISKLDDANWAGGLKSKECTLIIT 565 Query: 424 EGDSAGGSAKQGR---NRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR 480 EGDSA A G R + + PL+GK+LNV ++LS++E+ L T LG Sbjct: 566 EGDSAKSLALAGLSVVGRNSYGVFPLRGKLLNVRDVASKQLLSNEEINNLTTILGLSHKN 625 Query: 481 DE---YNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKV 537 + + LRY ++IM D D DGSHI+ L++ F + P +++RG + P+ K Sbjct: 626 SYDTDESMEDLRYGRVMIMADQDHDGSHIKGLVMNFIHYFWPNLLKRGFLVEFVTPIIKA 685 Query: 538 KK-GKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQ--KMI 594 K Q++ + ++++ +I+ D +T K + + + + Sbjct: 686 TKSSTQKKSFFTIKDYEKWRETISSDQLKQYTI---------KYYKGLGTSTSAEAKEYF 736 Query: 595 NRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTN 654 + +++ K + + + A D ++ + + + + N Sbjct: 737 SNLDKHVIKFIWGDEA-DDLIKMAFAKDLSSLRQRWIKETDMSQGIDHSIKEITYPDFIN 795 Query: 655 AEQNLFEPIVRVRTH--GVDTDYPLDHEFITGGEYRRICTLGE--KLRGLLEEDAFIERG 710 E + +R+ +D P + + RR+ + +L G + E G Sbjct: 796 KELIHYSWAANLRSIPSLIDGLKPGQRKILFASFKRRLTNEIKVSQLSGYVAEQTSYHHG 855 Query: 711 ERR 713 E+ Sbjct: 856 EQS 858 >UniRef50_A4HGT2 DNA topoisomerase 2 n=11 Tax=Trypanosomatidae RepID=A4HGT2_LEIBR Length = 1501 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 143/755 (18%), Positives = 277/755 (36%), Gaps = 77/755 (10%) Query: 6 DSSSIKVLKGLDAVRKRPGMYIGDTDDG----------------------TGLHHMVFEV 43 + + + RP MYIG + GL+ + E+ Sbjct: 5 VEQIYQKKTQHEHILTRPDMYIGTIEPVTDDIWVYDDAENIMKQRKCTWTPGLYKIFDEI 64 Query: 44 VDNAIDEALAGHCKEIIVTI-HADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGG 102 + NA D + + ++ + ++ V V ++G GIP H E + E+I L Sbjct: 65 LVNAADNKVRDPLGQTVIRVWMTEDYVRVYNNGEGIPIQRHREHDLWVPEMIFGHLLTSS 124 Query: 103 KFDDNSYKVSGGLHGVGVSVVNALSQKLELVI--QREGKIHRQIYEHGVPQAPLAVTGET 160 +DD KV+GG +G G + N S++ E+ R K + + + Q + Sbjct: 125 NYDDEEAKVTGGRNGFGAKLTNVFSKQFEVETVHSRSRKKFYMKWTNNMLQHDDPIIVPC 184 Query: 161 EK-TGTMVRFWPSLETF--TNVTEFEYEILAKRLRELSFLN-SGVSIRLRDKRDGKEDHF 216 E TMV F+P F +E ++ +R+ +++ + L D+R Sbjct: 185 ESADYTMVTFYPDFARFHVDKFSEDILLMMKRRVYDVAGCTDKTLKCFLNDERIACTT-- 242 Query: 217 HYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQR 276 +V+ + S + E+ ++ ++ F N+I Sbjct: 243 -----FPEYVDLY----PTMGEERKAASYSRANDRWELCVRVSN-IGPQQVSFVNSIATT 292 Query: 277 DGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQT 336 GGTH+ + + K+ K R + V+ + +P F SQT Sbjct: 293 RGGTHVKYIMDQIVTKVVEQAKKK-----KKTDVKSHMIRPHIFLFVNCLIDNPSFDSQT 347 Query: 337 KDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKG 396 K+ L + + K + + +Y++ + +V + ++ A ++ A A ++ Sbjct: 348 KETLNTVKSKFGSTCDLPNSIVDYIMNSG-----IVERSVEMANSKIAKEMASKIKSSD- 401 Query: 397 ALDLAGLPGKLADCQE---RDPALSELYLVEGDSAGGSAKQGR---NRKNQAILPLKGKI 450 + G+P KL D E + L L EGDSA G +R + PL+GK Sbjct: 402 RKQIMGIP-KLDDANEAGGKHGHRCTLILTEGDSAKTLCTAGLAVKDRDYFGVFPLRGKP 460 Query: 451 LNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLL 510 LNV +A K+ + +E+ ++ +G I + N D LRY ++IM+D D DGSHI+ LL Sbjct: 461 LNVREASLKKLAACEEIQCVMKIMGLDIRQKYENTDGLRYGHLMIMSDQDHDGSHIKGLL 520 Query: 511 LTFFYRQMPEIVE-RGHVYIAQPPLYKVK-KGK----QEQYIKDDEAMDQYQISIALD-- 562 + F + P ++ G + P+ K + KG+ + +++ +I + Sbjct: 521 INFIHCFWPNLLRVPGFLQQFITPIVKARPKGRGGAGKAISFFSMPDYFEWKKAIGDNLS 580 Query: 563 GATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSD 622 + E + + + ++ ++ + + D Sbjct: 581 NYQIRYYKGLGTSGAEEGREYFENIDRHRLSFVEQDQSEEDRIVMA------FGKDRVED 634 Query: 623 EQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTH--GVDTDYPLDHE 680 + V+ + Q + + E LF R+ +D P + Sbjct: 635 RKEWITNFKTNVNVNESMDYSVRQVSYRDFVDKELILFSIADCERSIPSAIDGFKPGQRK 694 Query: 681 FITGGEYRRICTLGE--KLRGLLEEDAFIERGERR 713 + R + + +L G + E + GE+ Sbjct: 695 ILFSCFKRNLVNSIKVVQLAGYVSEHSAYHHGEQS 729 >UniRef50_A0C0L0 DNA topoisomerase 2 n=3 Tax=Paramecium tetraurelia RepID=A0C0L0_PARTE Length = 1274 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 136/701 (19%), Positives = 262/701 (37%), Gaps = 60/701 (8%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDT--------------------DDGTGLHHMV 40 M K + ++ + +RP YIG + G + Sbjct: 1 MRQKTIEEQYKKMTHIEHILQRPDTYIGSIQRTSEQMWIIQNGKMIQKEIEYVPGFFKIF 60 Query: 41 FEVVDNAIDEALA----GHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMT 96 E++ NA D I V I N +++++DG IP IH E + E+I Sbjct: 61 DEILVNAADNLQRDTRQHKQSYIKVDI--GNEITIKNDGLPIPVEIHKEYQIYVPELIFG 118 Query: 97 VLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAV 156 V G FDD+ +V GG +G G + N S + L + + ++ + + + Sbjct: 119 VFLTGSNFDDSEKRVVGGRNGYGAKLTNVYSTEFTLEVCDGNNYFKLVWNNNMSNKQIPT 178 Query: 157 TGETEKT-GTMVRFWPSLETFT--NVTEFEYEILAKRLRELSFLN-SGVSIRLRDKRDGK 212 + +K + + P + F + +L +R+ +L+ + S +++ L D++ Sbjct: 179 IKQLKKDPYVSISYKPDYKRFGMKEIEADTQALLTRRVYDLAGIYGSKINVYLNDEKIKI 238 Query: 213 EDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNN 272 ++ + ++ P I F + EV + ++ Q F N Sbjct: 239 N---SFQKYVDLYL--------PTEGAIKIFDKDMTTPRWEVVVSYSPT-QFQHVSFVNA 286 Query: 273 IPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKF 332 I GGTH+ + + + M+ K + ++ L ++ + +P F Sbjct: 287 IYTAKGGTHVNYVTDKIIQEIQNEMNNNKKYK--SIEVQKYQIKQSLWVFINCLIDNPTF 344 Query: 333 SSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMT 392 SQTK+ + + + + + E + ++ I A+A+ A+ +++ Sbjct: 345 DSQTKENMTTKVSEFGGSSEEKFKVTEKFSKALIKTD-IIETIFQQAKAKADAKLNKQLK 403 Query: 393 RRK-GALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRN---RKNQAILPLKG 448 K G L D +++ L L L EGDSA A G + R + PLKG Sbjct: 404 GTKTGRLHGIEKLDDANDAGKKNSELCTLILTEGDSAKALAMAGIDIVGRDRYGVFPLKG 463 Query: 449 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRT 508 K+LNV +A ++L ++E+ LI +G R + LRY S++IMTD D+DGSHI+ Sbjct: 464 KLLNVREASLKQILQNEEIENLIKIIGLQKERQYTDLKSLRYGSVMIMTDQDIDGSHIKG 523 Query: 509 LLLTFFYRQMPEIVE-RGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLH 567 L++ F + P +V+ G + PL K KG Q + +++ + + Sbjct: 524 LIINFIHHFWPSLVKYSGFLKEFVTPLIKATKGNQTIPFFTVQDFNKFAQEEDIKNWKIK 583 Query: 568 TNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVT 627 S+ Q+ + + ++ + Sbjct: 584 YYKGLGT----------SDDQEAQEYFKNLRTHTIQFRYDGDDDDSSIDLCFNKKKANDR 633 Query: 628 RWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRT 668 + A + + S+ + + E F +R+ Sbjct: 634 KQWLAQYNHDLYVDHTKSELGYSEFIHKELIHFSMADNIRS 674 >UniRef50_A6TSS9 DNA gyrase, subunit B domain protein n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TSS9_ALKMQ Length = 680 Score = 464 bits (1193), Expect = e-129, Method: Composition-based stats. Identities = 183/663 (27%), Positives = 306/663 (46%), Gaps = 41/663 (6%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Y + SI L ++ VR RP + G D TG H V E V N++DEA G K I V Sbjct: 6 KQEYGNESISSLTEIEKVRLRPQVIFGS-DGITGSRHTVDETVANSVDEAKEGFGKLIKV 64 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFD---DNSYKVSGGLHGV 118 D S+SVQD RGIP + +E E++ L+AGGK++ SY+ S GL+G+ Sbjct: 65 KRFKDRSISVQDFARGIPVEFNSKENKYNWELVFCTLYAGGKYNTNSGESYEYSKGLNGL 124 Query: 119 GVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPL-AVTGETEKTGTMVRFWPSLETFT 177 G + S+ ++++++R+G + +E G L + E TGT + + P L+ FT Sbjct: 125 GTTATQFASEYMDVLVRRDGYEYTLRFEKGENIGGLQKKKCDYESTGTTITWKPDLDVFT 184 Query: 178 NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIH 237 ++ E + L+ + +N G++ L D+ + ++YE GI ++E +N K Sbjct: 185 DIN-IPLEFYQELLKRQAIVNKGITFELYDEASEENFTYYYEKGIVDYIEEINGGKEL-- 241 Query: 238 PNIFYFSTEKDG----------IGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRA 287 ++ Y E G + EVA +N+ +I + N+ GG ++ Sbjct: 242 SSVQYIELETKGRDRADKPEYKVKAEVAFAFNN-HASHIEYYHNSSYLEYGGAPDKAVKS 300 Query: 288 AMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKS 347 A + Y+ KK + A D + L+ + + F +QTK + + ++S Sbjct: 301 AFLSAIEQYLKNNNLYKKDEKRAIFADIEDSLVLISNSYSTLTSFENQTKRAISNVFIQS 360 Query: 348 AVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRK--GALDLAGLPG 405 A+ + E L Y +EN +A + +II R+RE+A + R ++K + A Sbjct: 361 ALTDFLKEKLQIYFIENKVEADKIANQIIINKRSRESAEKTRINVKKKLESPSNFANKVA 420 Query: 406 KLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQ 465 K DC+ +D + ELY+VEGDSA GS KQGR+ + QAI+P++GKILN KA+ D + + Sbjct: 421 KFVDCKTKDKSKRELYIVEGDSAMGSTKQGRDSEFQAIMPVRGKILNCLKAKLDNIFNDS 480 Query: 466 EVATLITALGCGIGRDE--------YNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQ 517 + L+ L CGI + DKL + +II TDADVDG IRTL+L YR Sbjct: 481 VIVDLLKVLSCGIEIKSKNNTDLYTFELDKLNWDKVIICTDADVDGYQIRTLILAMLYRL 540 Query: 518 MPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPA--- 574 +P ++ G VYIA+ PL+++ + + + + ++ + Sbjct: 541 VPTLLREGKVYIAETPLFEIISTTLPKLTDKQKDGITFVENKGDKNYSIFVYSDQQRDFV 600 Query: 575 ------LAGEALEKLVSE---YNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQT 625 K + E Q +N R+ + + + + + L + Sbjct: 601 VSKLKGKYAIQRSKGLGENEPEMMWQTTMNPQTRKLIQVTMSDAQKADDVFDLLLGNNLE 660 Query: 626 VTR 628 + Sbjct: 661 GRK 663 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 66/342 (19%), Positives = 121/342 (35%), Gaps = 52/342 (15%) Query: 511 LTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNA 570 LT F Q + + A K K Q +I++ D+ I ++ + + Sbjct: 342 LTSFENQTKRAISNVFIQSALTDFLKEKL--QIYFIENKVEADKIANQIIINKRSRESAE 399 Query: 571 SAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWV 630 + LE + N K ++ + K L + + + + Sbjct: 400 KTRINVKKKLESPSNFANKVAKFVDCKTKDKSKRELYIVEGDSAMGSTKQGRDSEFQAIM 459 Query: 631 NALVSELNDK------------------------EQHGSQWKFDVHTNAEQNLFEPIVRV 666 LN E ++ ++ ++ Sbjct: 460 PVRGKILNCLKAKLDNIFNDSVIVDLLKVLSCGIEIKSKNNTDLYTFELDKLNWDKVIIC 519 Query: 667 RTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIE------------------ 708 VD I YR + TL + + + E E Sbjct: 520 TDADVDGYQI--RTLILAMLYRLVPTLLREGKVYIAETPLFEIISTTLPKLTDKQKDGIT 577 Query: 709 ----RGERRQPVA-SFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRML 763 +G++ + +Q D++V + + +IQR KGLGE PE +W+TTM+P++R+++ Sbjct: 578 FVENKGDKNYSIFVYSDQQRDFVVSKLKGKYAIQRSKGLGENEPEMMWQTTMNPQTRKLI 637 Query: 764 RVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKA-ANIDI 804 +VT+ DA AD +F L+G+ +E R+ I EN K ID+ Sbjct: 638 QVTMSDAQKADDVFDLLLGNNLEGRKVHIAENGHKYLEQIDV 679 >UniRef50_Q44272 DNA gyrase subunit B (Fragment) n=2942 Tax=cellular organisms RepID=GYRB_ACIG9 Length = 390 Score = 458 bits (1178), Expect = e-127, Method: Composition-based stats. Identities = 292/392 (74%), Positives = 330/392 (84%), Gaps = 4/392 (1%) Query: 106 DNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGT 165 DNSYKVSGGLHGVGVSVVNALS+KLEL I R GKIH Q Y HG Q PL V G+T +TGT Sbjct: 1 DNSYKVSGGLHGVGVSVVNALSEKLELTIHRAGKIHEQEYRHGDSQYPLKVVGDTNRTGT 60 Query: 166 MVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAF 225 VRFWPS ETF+ F +ILA+RLRELSFLN+GV I LRD+R E F YEGG+ F Sbjct: 61 RVRFWPSAETFSQTI-FNVDILARRLRELSFLNAGVRIVLRDERINAEHVFDYEGGLSEF 119 Query: 226 VEYLNKNKTPIHPNIFYFSTE--KDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLA 283 V+Y+N+ KT ++ +IF+F+ +GI VEVALQWND +QEN+ CFTNNIPQ+DGGTHLA Sbjct: 120 VKYINEGKTHLN-DIFHFTAAQADNGITVEVALQWNDSYQENVRCFTNNIPQKDGGTHLA 178 Query: 284 GFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSS 343 GFRAA+TR LN YMD E KK KV+ +GDDAREGL A+VSVKVPDPKFSSQTK+KLVSS Sbjct: 179 GFRAALTRGLNNYMDSENILKKEKVAVSGDDAREGLTAIVSVKVPDPKFSSQTKEKLVSS 238 Query: 344 EVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGL 403 EVK+AVEQ MN+ +EYLLENP AK + GKIIDAARAR+AAR+AREMTRRK ALD+AGL Sbjct: 239 EVKTAVEQAMNKAFSEYLLENPQAAKAIAGKIIDAARARDAARKAREMTRRKSALDIAGL 298 Query: 404 PGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLS 463 PGKLADCQE+DPALSELYLVEGDSAGGSAKQGRNRK QAILPLKGKILNVE+ARFD+M+S Sbjct: 299 PGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDRMIS 358 Query: 464 SQEVATLITALGCGIGRDEYNPDKLRYHSIII 495 S EV TLITALGCGIGR+EYNPDKLRYH III Sbjct: 359 SAEVGTLITALGCGIGREEYNPDKLRYHKIII 390 >UniRef50_Q1NK64 DNA topoisomerase II:ATP-binding region, ATPase-like n=3 Tax=Bacteria RepID=Q1NK64_9DELT Length = 614 Score = 456 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 190/642 (29%), Positives = 309/642 (48%), Gaps = 57/642 (8%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGT----GLHHMVFEVVDNAIDEALAGHCK 57 S YD S IK L L+ +R RPGMYIG +G+ G++ ++ EV+DN +DE + G + Sbjct: 5 SAVYDESKIKTLSSLEHIRMRPGMYIGRLGNGSHPDDGIYILLKEVIDNGVDEFIMGAGR 64 Query: 58 EIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHG 117 I + + DN V+++D GRGIP G E + +V++ G K++ ++++ S GL+G Sbjct: 65 AIDIALADDNVVTIRDYGRGIPLGK-------LVECV-SVINTGAKYNTDAFQFSVGLNG 116 Query: 118 VGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFT 177 VG VNA+S + + R+G+ R + GV E GT+V F P E F Sbjct: 117 VGTKAVNAMSSRFVVTSFRDGEFARAKFARGVLVNE-ESGRSREPNGTLVEFRPDGEMFP 175 Query: 178 NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIH 237 F + + +RL+ S+LN+G+++ + F+ E G+ + ++ Sbjct: 176 EYA-FNRDFIRRRLKRYSYLNAGLTLNFDGE------SFYSENGLLDLLA--SETSGTSL 226 Query: 238 PNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYM 297 Y + VE A DG+ E+ + F N +GGTHL+ FR + + +N Y Sbjct: 227 YEPIYHREK----TVEFAFSHTDGYGESYFSFVNGTYTAEGGTHLSAFREGLLKGVNEYA 282 Query: 298 DKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELL 357 K+ G D REG++ V+VKV +P F SQTK+KL +++++ + + E + Sbjct: 283 GKK---------FDGADVREGVVGAVAVKVREPIFESQTKNKLGNADIRGEIVTAVREAV 333 Query: 358 AEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADC------- 410 + +L +N A++V+ KI +AR R+ + R+ + K +P +L DC Sbjct: 334 SAFLYKNTDIAELVIDKIQQSARVRKELQHVRKEAKAKARKVALKIP-QLKDCKYHPAPG 392 Query: 411 -QERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 + ++L EG SA GS R+ QA+ LKGK LNV + + E+ Sbjct: 393 KPSPAGRENMVFLTEGQSASGSIVSARDPMTQAVFSLKGKPLNVFGQPMALLYKNDEMYN 452 Query: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 ++ AL E + +LR+ III TDADVDG HIR LLLTFF +V+RGHVYI Sbjct: 453 IMRALDV-----EESIGRLRFDKIIIATDADVDGLHIRNLLLTFFLHYFESLVKRGHVYI 507 Query: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLH-TNASAPALAGEALEKLVSEYN 588 + P+Y+V+ +Q Y ++ + +A G T + GE K ++ Sbjct: 508 LETPIYRVRNKEQTFYCYTEKERREADQKLAGRGKTRRPVEVTRFKGLGEISPKEFKQFI 567 Query: 589 ATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWV 630 ++ R + + L P + E + R Sbjct: 568 GSEM-------RLQQVDIDTLSEVPRVLEFYMGKNTPSRREY 602 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 28/192 (14%), Positives = 63/192 (32%), Gaps = 7/192 (3%) Query: 610 IYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTH 669 P + + + + + E + DV + + F+ I+ Sbjct: 418 ARDPMTQAVFSLKGKPLNVFGQPMALLYKNDEMYNIMRALDVEESIGRLRFDKIIIATDA 477 Query: 670 GVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKE 729 VD + + Y + L + E+ + ++ + K Sbjct: 478 DVDGLHIRNLLLTFFLHYFESLVKRGHVYILETPIYRVRNKEQTFYCYTEKERREADQKL 537 Query: 730 SRRG-----LSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDA 784 + RG + + R+KGLGE++P++ + R+ +V + ++ MG Sbjct: 538 AGRGKTRRPVEVTRFKGLGEISPKEFKQFI--GSEMRLQQVDIDTLSEVPRVLEFYMGKN 595 Query: 785 VEPRRAFIEENA 796 RR +I + Sbjct: 596 TPSRREYIMSHL 607 >UniRef50_Q9HGH7 DNA topoisomerase 2 (Fragment) n=1 Tax=Pichia kudriavzevii RepID=Q9HGH7_ISSOR Length = 804 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 134/710 (18%), Positives = 262/710 (36%), Gaps = 79/710 (11%) Query: 29 DTDDGTGLHHMVFEVVDNAIDEALAGH-CKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEE 86 GL + E++ NA D + K I V I+ + N +SV++DG+GIP IH +E Sbjct: 8 TVSIVPGLFKIFDEILVNAADNKIRDPSMKRIDVIINEEENVISVKNDGKGIPIEIHDKE 67 Query: 87 GVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLEL--VIQREGKIHRQI 144 + E+I L +DD+ KV+GG +G G + N S + + GK + Q+ Sbjct: 68 NIYIPELIFGNLLTSSNYDDDQKKVTGGRNGYGAKLCNIFSTEFTVHTADMSHGKEYTQV 127 Query: 145 YEHGVPQ--APLAVTGETEKTGTMVRFWPSLETFT--NVTEFEYEILAKRLRELSFLNSG 200 + + + + P + + + T + F P L F + + +R+ +L G Sbjct: 128 WRNNMSEVGKPKILNFKKKNEFTEIIFKPDLSKFGMEKLDHDILGVFKRRVYDLCGSVRG 187 Query: 201 VSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKT-------------------------- 234 + + L + + Y ++ +V+ +NK+K Sbjct: 188 IRVTLNGELLKINNFKQY---VELYVKAINKSKEERPHIPVKIETEDGTPLNGESEANTE 244 Query: 235 -------PIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRA 287 ++ N+ E E+A +DG N F N+I GGTH+ Sbjct: 245 TSSTPEPSLNENLPTIVHEIINDRWEIAFCISDG-SFNQVSFVNSIATTLGGTHVDDVAN 303 Query: 288 AMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKS 347 + + + ++ K + + ++ V +P F+ QTK+ L + K Sbjct: 304 MLCGKITEQIKRKN----KKAIIKPFQIKSKMFLFINCLVENPAFTFQTKEYLTTQLSKF 359 Query: 348 AVEQ-QMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGK 406 ++ ++ E + +L ++ +++D +A + +K + Sbjct: 360 GGKRLELPEKFIKKILNTG-----IIDEVLDIVQANADKALKKTDGAKKSRITGYPKLED 414 Query: 407 LADCQERDPALSELYLVEGDSAGGSAKQGR---NRKNQAILPLKGKILNVEKARFDKMLS 463 R+ L L EGDSA A QG R PL+GK+LNV +A D+++ Sbjct: 415 ANKAGTREGYKCTLILTEGDSAKSLAVQGLAVVGRNYYGCFPLRGKVLNVREASTDQIMK 474 Query: 464 SQEVATLITALGCGIGRDE--YNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEI 521 + + + +G + + LRY I+IM D D DGSHI+ LL+ F P + Sbjct: 475 NGAIQAIKQIMGLQHKKHYGPDDIKSLRYGRIMIMADQDHDGSHIKGLLINFLEASFPGL 534 Query: 522 VE-RGHVYIAQPPLYKVK-----KGKQEQYIKDDEAMDQYQISIALD-GATLHTNASAPA 574 +E + P+ K+ ++ +Q++ + Sbjct: 535 LEIPNFLIEFITPIVKITIMSGPNRRKTIPFYSMPEYEQWRETEGSTCSYKQKYYKGLGT 594 Query: 575 LAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALV 634 + + + + ++ + K + + ++ +L + + + Sbjct: 595 SSAQEMREYFTQLDKHLKRFDALRDEDKSSI--DLAFSKKKADD--------RKEWLRNY 644 Query: 635 SELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHG--VDTDYPLDHEFI 682 + S N E LF VR+ +D P+ + + Sbjct: 645 QPGTYLDSTLSDIPISEFINKELILFSMADNVRSIASVMDGFKPVQRKIL 694 >UniRef50_C4R475 DNA topoisomerase 2 n=1 Tax=Pichia pastoris GS115 RepID=C4R475_PICPG Length = 1344 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 147/767 (19%), Positives = 279/767 (36%), Gaps = 98/767 (12%) Query: 6 DSSSIKVLKGLDAVRKRPGMYIGDTDDG----------------------TGLHHMVFEV 43 S + L L+ + KRP YIG + GL + E+ Sbjct: 63 VSDQYQKLSQLEHILKRPDTYIGSVEKHESEQWIYNKETESMERKVVSIVPGLFKIFDEI 122 Query: 44 VDNAIDEALAGH-CKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAG 101 + NA D + K I VTI + N + V++DG+ E+I L Sbjct: 123 LVNAADNKIRDPSMKNIEVTIKPEENLIEVKNDGK---------------ELIFGNLLTS 167 Query: 102 GKFDDNSYKVSGGLHGVGVSVVNALSQKLELV--IQREGKIHRQIYEHGVPQAPLAVTGE 159 ++D+ KV+GG +G G + N S + + + GK++ Q + + + V Sbjct: 168 SNYNDDQKKVTGGRNGYGAKLCNIFSTEFIVETYDKSSGKLYTQRWSQNMGKTDKPVIKS 227 Query: 160 TEK--TGTMVRFWPSLETF--TNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDH 215 +K T V F P L F T + E +L +R+ +L +S++L ++ + Sbjct: 228 IKKATEYTKVSFRPDLAKFNMTELDEDILGVLRRRVFDLCGSVRDISVKLNGEKLKIRNF 287 Query: 216 FHYEGGIKAFVEYLNKNKTPIHPNI-------------FYFSTEKDGIGVEVALQWNDGF 262 Y ++ +V+ L PI + E+A +D Sbjct: 288 KQY---VEMYVKALEHKNDPIKTEDSSLLPPPSSSSPSQTIVYQTLNDRWEIAFAVSDS- 343 Query: 263 QENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAV 322 N F N+I GGTH+ + + + + + K + + Sbjct: 344 TFNQVSFVNSIATTSGGTHVNFIADQIVKKIEKEIKTKN----KKAMIKPFQIKNNMFLF 399 Query: 323 VSVKVPDPKFSSQTKDKLVSSEVKSAVEQ-QMNELLAEYLLENPTDAKIVVGKIIDAARA 381 ++ V +P F+SQTK++L + + ++ ++ + + +L +V I+D A Sbjct: 400 INCLVENPAFTSQTKEQLTTRASQFGGKKTEVPDDFIKKILRTG-----IVDAILDIAAM 454 Query: 382 REAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGR---NR 438 + RK + ++ L L EGDSA A G R Sbjct: 455 NADKALKKNDGSRKNRITGYPKLEDANKAGTKEGYKCTLILTEGDSASSLAVAGLAVVGR 514 Query: 439 KNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDE--YNPDKLRYHSIIIM 496 + PL+GK+LNV +A D+++ + E+ + +G ++ N + LRY I+IM Sbjct: 515 DYYGVYPLRGKMLNVREASADQIMKNAEIQAIKQIMGFQHKKNYTPENINSLRYGHIMIM 574 Query: 497 TDADVDGSHIRTLLLTFFYRQMPEIVE-RGHVYIAQPPLYKVK-----KGKQEQYIKDDE 550 TD D DGSHI+ L++ F P +++ + P+ KV + ++ Sbjct: 575 TDQDHDGSHIKGLIINFLESSFPGLLKVPNFLLEFITPIVKVTITSGPEKRKVIPFYSMP 634 Query: 551 AMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELI 610 + + + E + + S+ + K + ++ P + +L Sbjct: 635 EYEAW-REQNTESFKQKYYKGLGTSLAEEMREYFSQLDKHMKTFHALQDVDPGFI--DLA 691 Query: 611 YQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTH- 669 + + + + S N E LF +R+ Sbjct: 692 FSKKKADD--------RKEWLRGFEPGVHLDPDLSIIPISDFINKELILFSMADNIRSIP 743 Query: 670 -GVDTDYPLDHEFITGGEYRRICTLGE--KLRGLLEEDAFIERGERR 713 +D P + + G R + + + +L G + E + G++ Sbjct: 744 SMLDGFKPSQRKILYGCYKRNLRSEIKVSQLAGYIGEHSAYHHGDQS 790 >UniRef50_A7ASL8 DNA gyrase subunit B, putative n=1 Tax=Babesia bovis RepID=A7ASL8_BABBO Length = 944 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 200/551 (36%), Positives = 307/551 (55%), Gaps = 67/551 (12%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 + Y + I VL+GL+AVRKRPGMYIG+T TGLH ++FE++DN++DE LAG C +I VT Sbjct: 148 SEYSTDDIVVLQGLEAVRKRPGMYIGNT-TETGLHQLLFEILDNSVDEYLAGCCNKITVT 206 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDD---------------- 106 + AD S + D+GRGIP + + G S E ++TVLH+GGKF+D Sbjct: 207 LRADGSAEISDNGRGIPCDVSEKTGKSGLETVLTVLHSGGKFNDTTSKPTPEDQVDEFYD 266 Query: 107 ------------------------NSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHR 142 N Y+ + GLHGVG+SVVNALS L + + K + Sbjct: 267 THISRKFRSQHVRGLRKRLKDASSNPYEYASGLHGVGLSVVNALSAWLRADVYKGTKQYS 326 Query: 143 QIYEHGVPQAPLAVTGETEKTGTMVRFWPSL--------------ETFTNVTEFEYEILA 188 G+ PL+V+ ++TGT + F P E + F ++ + Sbjct: 327 IQLSRGMVTEPLSVSKCAKRTGTTISFMPDYDHVFIAHHDHQVDTECPGCASAFNHDTVR 386 Query: 189 KRLRELSFLNSGVSIRLRDKRDG------KEDHFHYEGGIKAFVEYLNKNKTPIHP--NI 240 R+ ELS++N +++RL D+R E+ F ++GG + F++ + K++ P++ NI Sbjct: 387 NRIEELSYVNPMLTLRLVDERLVNEDGSFHEETFMHKGGTREFLQDIIKDRVPLYKSANI 446 Query: 241 FYFSTEKDGIGVEVALQWN-DGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDK 299 + G+ VEV+L W + + + F NN+ GTH+ GF+AA+T+ +N + Sbjct: 447 INIRGKSGGVEVEVSLSWAAETYAAQLKGFANNVSTSA-GTHIEGFKAAITKAVNHACRR 505 Query: 300 EGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAE 359 G K S +G+ REGL A++SVK+ +F QTK KL + ++AVE+ ++ + E Sbjct: 506 AGLFKHKAPSISGEFIREGLTAIISVKLMGAEFDGQTKSKLGNQIARTAVERIVSYQMNE 565 Query: 360 YLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGAL-DLAGLPGKLADCQERDPALS 418 L ++P + K I A RA E A+ A+E+ R+K A GLP KL+DC D L+ Sbjct: 566 ILEKHPQLLTAIYNKSIAAKRAFEVAKHAKELVRQKNANFLTTGLPAKLSDCTSNDIGLT 625 Query: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD-KMLSSQEVATLITALGCG 477 EL++VEG+SA G+AKQ RNR+ QA+LPLKGKILN+EK D K++ ++E+ LI+++G Sbjct: 626 ELFIVEGESAAGNAKQARNRRFQAVLPLKGKILNIEKISSDLKVMENEEIKLLISSIGLA 685 Query: 478 IGRDEYNPDKL 488 + + D L Sbjct: 686 VNPQTWRQDTL 696 Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 46/260 (17%), Positives = 90/260 (34%), Gaps = 42/260 (16%) Query: 584 VSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQH 643 V+ Q ++ +E P + L+ + D + + + + + Sbjct: 686 VNPQTWRQDTLSHVENMVPTSTRDALVATGPVGTTV--DTTEASSSDSVDNNNVTATDNL 743 Query: 644 GSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEE 703 G+ + I+ + VD + ++ Sbjct: 744 GNIPVDASSLAQLPLRYGKIILLTDADVDGAHLRILLLGLLFRICPQLYEHGRVYIACPP 803 Query: 704 DAFIERGER-----------RQPVASFEQALD---------------------------W 725 I + A E+ L Sbjct: 804 LYRITNMRKGNKARNGPNASAYTYAWSEEELPIAINKEMAPYNLDSVPSEDIADTEQTPE 863 Query: 726 LVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAV 785 + +S RG+++QR+KGLGEM +QLW+TTM+P+ R + R++V+D + A ++ LMG V Sbjct: 864 IKPDSMRGITVQRFKGLGEMMAQQLWDTTMNPDKRILRRISVQDGMRASKMLELLMGGDV 923 Query: 786 EPRRAFIEENAL--KAANID 803 + R+ FI +A + ++D Sbjct: 924 QSRKEFIFTHADAFQLHDLD 943 Score = 83.3 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 42/170 (24%), Positives = 68/170 (40%), Gaps = 29/170 (17%) Query: 488 LRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK---KGKQEQ 544 LRY II++TDADVDG+H+R LLL +R P++ E G VYIA PPLY++ KG + + Sbjct: 758 LRYGKIILLTDADVDGAHLRILLLGLLFRICPQLYEHGRVYIACPPLYRITNMRKGNKAR 817 Query: 545 ---------YIKDDEAMDQYQ--------------ISIALDGATLHTNASAPALAGEALE 581 Y +E + IA T + Sbjct: 818 NGPNASAYTYAWSEEELPIAINKEMAPYNLDSVPSEDIADTEQTPEIKPDSMRGITVQRF 877 Query: 582 KLVSEYNA---TQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTR 628 K + E A +N +R + +++ + + E + + + Sbjct: 878 KGLGEMMAQQLWDTTMNPDKRILRRISVQDGMRASKMLELLMGGDVQSRK 927 >UniRef50_Q6RCM1 DNA topoisomerase 2 n=2 Tax=Trichomonas vaginalis RepID=Q6RCM1_TRIVA Length = 1458 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 149/706 (21%), Positives = 266/706 (37%), Gaps = 72/706 (10%) Query: 6 DSSSIKVLKGLDAVRKRPGMYIGDTD---------------------DGTGLHHMVFEVV 44 L + V RP YIG + GL+ + E++ Sbjct: 13 SDEQYVKLTHREHVLTRPDSYIGSIEPRECKMWVCNEDGKFEFREISYVPGLYKIFDEIL 72 Query: 45 DNAIDEALAGH-CKEIIVTIHA-DNSVSVQDDGRGIPTGI--HPEEGV--SAAEVIMTVL 98 NA D I + N +SV +DG+GI T P + E I + L Sbjct: 73 VNAADNKQRDPPLTTIKGEVDPAQNRISVWNDGKGISTQKQFSPNDNCEYYIPEFIFSQL 132 Query: 99 HAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQR--EGKIHRQIYEHGVP--QAPL 154 ++D KV+GG +G G + N S+K + I EG ++Q + Q P Sbjct: 133 LTSSNYNDKQEKVTGGRNGYGAKLANIFSKKFHINIYNADEGINYQQTITDNMTNIQPPK 192 Query: 155 AVTGETEKTGTMVRFWPSLETFT--NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK 212 G+ + + T + FWP LE F +T+ +++ +R+ +L+ + V I + Sbjct: 193 LKNGKGKGSYTEISFWPDLERFNLQTITKDHVDLIRRRVYDLADILPKVKIFWNGNQVPI 252 Query: 213 EDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNN 272 + +E K ++ K + P + EK G ++ + + + F N Sbjct: 253 K---KWEDYCKVYL------KEDVKPLVCEVKNEK-GYTWKIGVAPSKSREFQQISFVNC 302 Query: 273 IPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKF 332 + +GGTH+ +T+ + Y+ + KV + L V V +P F Sbjct: 303 VATSNGGTHVDVVVNQITKYITDYLKNR---RSGKVETKPSVVKNFLYVFVDSLVINPSF 359 Query: 333 SSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMT 392 SQTK++L + K + ++ + + +L+ +V + + A +E + A Sbjct: 360 DSQTKERLTLDQKKLKDDCKLPDNFLDKILKTD-----IVALVTEYANFKEQRKVANMKG 414 Query: 393 RRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGR---NRKNQAILPLKGK 449 +KG L + L + + L L EGDSA +A G R + PL+GK Sbjct: 415 TKKGRLIINKLEDA-NMAGKAESLKCTLILTEGDSAKATAVTGLATIGRDYYGVFPLRGK 473 Query: 450 ILNVEKARFDKMLSSQEVATLITALGCGIGRDEYN---PDKLRYHSIIIMTDADVDGSHI 506 +LN K+ + E+ +I +G N +LRY SI+IM D DVDGSHI Sbjct: 474 LLNTRDISAKKLSENDEIQNIIKIMGLDPMEKYENDDSMKRLRYGSIMIMADQDVDGSHI 533 Query: 507 RTLLLTFFYRQMPEIV-ERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQIS----IAL 561 + L++ F + P ++ +R + P+ KV KG ++ + ++ Sbjct: 534 KGLIINFVHSMWPNLLKKRNFITEFITPIVKVTKGNNKKGAISFFTIPEFSQWKAANNNG 593 Query: 562 DGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLS 621 G + E ++ S + +K+ + + L + + Sbjct: 594 KGYKMKYYKGLATSTAEEAKEYFSNISKHKKVF-IYTNENDEERIN-LAFAKKRADDR-- 649 Query: 622 DEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVR 667 W+ L + + K+ + E LF R Sbjct: 650 -----KNWLAQLDANETYLGTKDTHIKYSDFVDKELILFSSYANYR 690 >UniRef50_B1ZME3 DNA topoisomerase type IIA subunit B region 2 domain protein n=42 Tax=Bacteria RepID=B1ZME3_OPITP Length = 629 Score = 447 bits (1149), Expect = e-124, Method: Composition-based stats. Identities = 181/608 (29%), Positives = 285/608 (46%), Gaps = 54/608 (8%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGT----GLHHMVFEVVDNAIDEALAGHC 56 M+ +Y +SIK L + +R RPGMYIG +G G++ ++ E +DN+IDE G+ Sbjct: 18 MAQAYTEASIKTLSSTEHIRLRPGMYIGRLGNGAHAEDGIYVLLKESIDNSIDEFTMGYG 77 Query: 57 KEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 116 ++I + + D V V+D GRGIP G E + ++++ G K+D ++K + GL+ Sbjct: 78 RKIEIEL-QDRMVRVRDYGRGIPLGK-------VLECV-SIINTGAKYDSETFKKAVGLN 128 Query: 117 GVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETF 176 GVG VNALS R+G+ + G + + TE+ GT++ F P F Sbjct: 129 GVGQKAVNALSFSYRAQAFRDGQTKLVEFAQGKLRKDHKIAKTTERNGTLIEFTPDEALF 188 Query: 177 TNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPI 236 +F E + L +FLN G+++ K F E G+K ++ N + P+ Sbjct: 189 GKDFKFRPEFIEDMLWNYAFLNRGLTLTFNGK------AFRSENGLKDLLQK-NLSGEPL 241 Query: 237 HPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAY 296 +P I + E +EVA + E Y F N GGTHLA FR A+ T+ + Sbjct: 242 YP-IIHLEGED----MEVAFTHGAHYGEEYYSFVNGQHTTMGGTHLAAFREALVETVRNF 296 Query: 297 MDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS-------SEVKSAV 349 + D R+ + A VSV+V +P F SQTK KL S ++ + Sbjct: 297 FKR---------DYDAADVRQSIDAAVSVRVMEPVFESQTKTKLGSTDIAPGGPSIRDFI 347 Query: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 + + + L YL +N A + KI ++ R R+ R + R + KL D Sbjct: 348 GKFVQQSLDGYLHKNRETADALRNKIEESERERKELAGIRSLARERAKKASLHN-RKLRD 406 Query: 410 CQ------ERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLS 463 C+ S L++VEGDSA GS R+ + QA+ LKGK LN + Sbjct: 407 CRLHLGDRNERAEESTLFIVEGDSAAGSLTATRDVQTQAVFALKGKPLNTFGLSKKVIYE 466 Query: 464 SQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVE 523 ++E L +AL E + D LRY+ ++I TDADVDG HIR LL++FF + P+++ Sbjct: 467 NEEFHLLQSALNV-----EDSMDGLRYNRVVIATDADVDGMHIRLLLISFFLQFFPDLIR 521 Query: 524 RGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKL 583 GH++I + PL++V+ K+ Y +E + AGE + Sbjct: 522 NGHLFILETPLFRVRNKKETIYCYSEEEKQAAMKKLGASHEITRFKGLGEISAGE-FKDF 580 Query: 584 VSEYNATQ 591 + E + Sbjct: 581 IGEAMRLE 588 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 61/167 (36%), Gaps = 5/167 (2%) Query: 637 LNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEK 696 ++E H Q +V + + + +V VD + + + L Sbjct: 465 YENEEFHLLQSALNVEDSMDGLRYNRVVIATDADVDGMHI--RLLLISFFLQFFPDLIRN 522 Query: 697 LRGLLEEDAFIE-RGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTM 755 + E R ++ E+ +K+ I R+KGLGE++ + + Sbjct: 523 GHLFILETPLFRVRNKKETIYCYSEEEKQAAMKKLGASHEITRFKGLGEISAGEFKDFI- 581 Query: 756 DPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANI 802 E+ R+ VT+ +++L MG R+ FI +N ++ Sbjct: 582 -GEAMRLEPVTLAHLNDSNELLGFFMGKNTPERQDFIIDNLKVEKDL 627 >UniRef50_B8C981 DNA topoisomerase 2 (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8C981_THAPS Length = 1179 Score = 447 bits (1149), Expect = e-124, Method: Composition-based stats. Identities = 135/759 (17%), Positives = 268/759 (35%), Gaps = 86/759 (11%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTD----------------------DGTGLHHMVFEVV 44 + L+ + RP MYIG T+ L + E++ Sbjct: 4 EDTYSRKTPLEHILLRPSMYIGPTEHADPKSCSSTNSPWTMQRQELSYVPALLKIFDEIL 63 Query: 45 DNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKF 104 NA D L +D +S+ ++G+ IP IH +E + E++ L G F Sbjct: 64 VNASDNRLRHPGSCNHFPSSSDPYISITNNGKSIPIQIHRKENMYIPELLFGHLLTGSNF 123 Query: 105 DDNSYKVSGGLHGVGVSVVNALSQKLELVIQREG------KIHRQIYEHGVPQAPLAVT- 157 +D+ +++GG HG G + N S++ + I K ++Q++E + A Sbjct: 124 NDDQKRLTGGRHGYGAKLTNVFSKQFVVEIGDGHSSKGKIKTYKQVWEDNMSVCHEAEVV 183 Query: 158 --------GETEKTGTMVRFWPSLETFT------NVTEFEYEILAKRLRELSFLNSG-VS 202 G+ T + F P L T + E EY+++ +R+ +++ + G ++ Sbjct: 184 SRDKKDADGKGNLDYTRISFIPDLARLTGDRKTEMLPEEEYQLMKRRVVDIAGCSGGKLT 243 Query: 203 IRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGF 262 + L + G + + + ++ P K EVA+ ++ Sbjct: 244 VTLNGEEISV-------SGFEDYANLYRQPESSATPLPPMV-YHKLNSRWEVAVGLSETK 295 Query: 263 QENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKE------GYSKKAKVSATGDDAR 316 F N + GGTH+ +++ + +++ + +S + R Sbjct: 296 SLESISFVNGMNTSRGGTHVDALARQISQYIADHINNKMARQLDNLQSGQPISVSVRMVR 355 Query: 317 EGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIV--VGK 374 L V+ + +P F SQ K+ L S+ +++ L+ +++ Sbjct: 356 RHLFLCVNCLIENPSFDSQMKECLTSNPDNFGSHFELSNSFLRKLVGPGIVEEVLRMAMG 415 Query: 375 IIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQ 434 AR + + L+ A L G D +P L L EGDSA A Sbjct: 416 AQQVNMARLLKEQTKRQVLSIPKLEDANLAGS-TDIGTENP--CTLILTEGDSAKALAVA 472 Query: 435 GR---NRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPD---KL 488 G R + + PL+GK +NV ++ ++ E+ + LG + +L Sbjct: 473 GLEVVGRDHYGVFPLRGKFMNVRNVTVKQLATNAELKAMCAILGLQFEKSYDTAKERQEL 532 Query: 489 RYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVE---RGHVYIAQPPLYKVKKGKQEQY 545 RY +++MTD D DGSHI+ L++ F P +++ R + + PL K K +++ Sbjct: 533 RYGHVMLMTDQDADGSHIKGLIMNMFRFFWPALLKPPSRPFMSMFITPLLKATKKGKKKD 592 Query: 546 IKDDEAMDQYQISIAL-------DGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598 ++ +Y T+ + + + Sbjct: 593 SISFFSVAEYNSWRESLEDEDEISKWTVKYYKGLGTSTPTEAKDYFLSFVRHYRPFKWQS 652 Query: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658 + + + +D + S + E+ G+ + + E Sbjct: 653 EKNDGERIDMAFE-----KDRANDRKDWILTEYDEKSAVTVDERDGNSITYGDFVDNELI 707 Query: 659 LFEPIVRVRT--HGVDTDYPLDHEFITGGEYRRICTLGE 695 F +R+ + VD P + + R + + Sbjct: 708 HFSNANNIRSLPNVVDGLKPSQRKVLYACFKRNLKDEIK 746 >UniRef50_D0MV61 DNA topoisomerase 2 n=2 Tax=Eukaryota RepID=D0MV61_PHYIN Length = 1329 Score = 446 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 149/717 (20%), Positives = 277/717 (38%), Gaps = 73/717 (10%) Query: 30 TDDGTGLHHMVFEVVDNAIDEALAGH-CKEIIVTIHADN-------SVSVQDDGRGIPTG 81 + L+ + E++ NA+D + + + V I + +SV +DG+GIP Sbjct: 22 VEYVPALYKIFDEIIVNAVDNKVRDPSMRHLDVIIEPGSKANGYRPWISVYNDGKGIPVK 81 Query: 82 IHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELV--IQREGK 139 H E V E+++ L G FDD + +++GG HG G + N S++ + G Sbjct: 82 FHKTEKVYVPELVLGHLLTGSNFDDTAARLTGGRHGYGAKLTNIFSKEFVVETGDTSMGL 141 Query: 140 IHRQIYEHGVPQAPLAVT----GETEKTGTMVRFWPSLETF--TNVTEFEYEILAKRLRE 193 ++Q++ + + G+ K T V F P LE F +T +L KR+ + Sbjct: 142 RYKQVWHNNMRTRGEPEITEFSGKDAKDFTKVSFSPDLEKFEMEKLTASMTRVLKKRVYD 201 Query: 194 LSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFV-----EYLNKNKTPIHPNIFYFSTEKD 248 ++ S V + L K+ +E IK F ++K P + S+ D Sbjct: 202 VAGCLSDVQVTLNGKKLPIS---GFESYIKTFRYSTTNNPVSKTAKPSKDSDDAASSGSD 258 Query: 249 ------GIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGY 302 ++ + +D F N + GG+H+ + R + +++K Sbjct: 259 YIYSRVNKRWKIGVLPSD-VGFVQVSFVNGMSALRGGSHVGYVSDQICRRVAEHVNK--- 314 Query: 303 SKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLL 362 K ++S + + + ++ ++ +P F SQ K+ + S ++E L + +L Sbjct: 315 -KFPELSVSTAQVKPHMAIFINCQIENPTFDSQMKEFMTSRPPTFGSTCVLSERLLKLVL 373 Query: 363 ENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQ---ERDPALSE 419 + +V +++ +ARAR+ A ++++ + +P KL D + Sbjct: 374 SDSG----IVERVVQSARARQRAALLKKVSSTRAKSSSVNVP-KLEDANLAGGARSSECS 428 Query: 420 LYLVEGDSAGGSAKQGR---NRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGC 476 L L EGDSA A G R + PL+GK+LNV A ++ + E A L T LG Sbjct: 429 LILTEGDSAKALAVAGLAVVGRDQYGVFPLRGKLLNVRDATVAQLGKNAEFAHLCTILGL 488 Query: 477 GIGRDE---YNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVER-GHVYIAQP 532 + KLRY +I MTD D DGSHI+ LL F+ PE+++ G + Sbjct: 489 RMDEHYGTEEARQKLRYGRVIAMTDQDHDGSHIKGLLFNLFHTFWPELLKEGGFISEFIT 548 Query: 533 PLYKV---------KKGKQEQYIKDDEAMDQYQISIAL---DGATLHTNASAPALAGEAL 580 P+ KV ++G + + +++ SI + Sbjct: 549 PIIKVSPTSKRVGTERGLETRRFFSLPEYFEWKASIDSADLKHYVIKYYKGLGTSTSAEG 608 Query: 581 EKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDK 640 + S+ + N + + ++A +D W+ S + Sbjct: 609 REYFSDLD------NHLVDFHWSGDNDGDALDMVFSKARAADR---KAWLLNEYSPASYL 659 Query: 641 EQHGSQWKFDVHTNAEQNLFEPIVRVRTH--GVDTDYPLDHEFITGGEYRRICTLGE 695 + + N E F R+ VD + + R++ + + Sbjct: 660 DTSSGSVTYQDFVNRELIQFSHADNQRSLPSVVDGLKISQRKVLFACMKRKLTSEVK 716 >UniRef50_UPI00016B23A5 DNA gyrase subunit B n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B23A5 Length = 486 Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats. Identities = 198/472 (41%), Positives = 283/472 (59%), Gaps = 15/472 (3%) Query: 173 LETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKN 232 F F+Y+ + LR ++L GV + D+R G+ F++EGGIK++V+ LN Sbjct: 1 PTIFKETVNFDYKWVVNYLRHQAYLTKGVYTSVVDERTGERKAFYFEGGIKSYVKNLNIG 60 Query: 233 KTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRT 292 K + +IFY + + VE+A+Q+ND + E + F NN+ DGGTHL GFR A+TR Sbjct: 61 KEVLSEDIFYVEKQIEDCMVEIAVQYNDTYVEVVKPFANNVLTPDGGTHLVGFRTALTRV 120 Query: 293 LNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQ 352 +N Y K K+ + + TGDD REGL AV+ VK+PDP+F QTK+KL + E++ V+Q Sbjct: 121 INDYARKNNLLKEKEDNLTGDDIREGLTAVILVKLPDPQFEGQTKNKLGNPEMRRYVDQV 180 Query: 353 MNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQE 412 M+E A YL ENP AK VVGK AARAR+AAR AR+ RKGA + LP KL DC Sbjct: 181 MSEYFAYYLEENPATAKKVVGKATLAARARKAARAARDNVIRKGAFEGLNLPSKLTDCSS 240 Query: 413 RDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 472 R+ EL++VEG+SA GSAK GR+ QAILPL+GK+LN E+ARFDKM ++ E+ +LI Sbjct: 241 RNRKDCELFIVEGNSAAGSAKDGRDSTIQAILPLRGKVLNTERARFDKMFANAEIVSLIK 300 Query: 473 ALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQP 532 A+G GIG D+++ +RY II MTDADVDG+HI TLL+TFF+R M E++E GHVY+A+P Sbjct: 301 AMGVGIG-DQFDISGIRYDKIIFMTDADVDGAHISTLLMTFFFRYMSEVIEAGHVYLAKP 359 Query: 533 PLYKVKKG----KQEQYIKDDEAMDQYQISIALD----GATLHTNASAPALAGE---ALE 581 PL+ + KG ++ YI D+ A+++ + G + NA AG Sbjct: 360 PLFGLSKGTGSNRKIDYIYDEAALEEKLTEKINERKAAGVKIDENAERFKQAGYTAQQRF 419 Query: 582 KLVSEYNA---TQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWV 630 K + E +A + +N R K +++ + + D + + Sbjct: 420 KGLGEMDASQLWETTMNPENRTLVKVNIEDAERADAIFTKLMGDSVELRKNF 471 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 46/207 (22%), Positives = 79/207 (38%), Gaps = 25/207 (12%) Query: 623 EQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFI 682 R+ + + ++ I+ + VD + Sbjct: 280 NTERARFDKMFANAEIVSLIKAMGVGIGDQFDISGIRYDKIIFMTDADVDGAHISTLLMT 339 Query: 683 TGGEYRRICTLGEKLRGLLEEDAFIERG----ERRQPVASFEQALDWLVKESRR----GL 734 Y + + +G + + + L ++ G+ Sbjct: 340 FFFRYMSEVIEAGHVYLAKPPLFGLSKGTGSNRKIDYIYDEAALEEKLTEKINERKAAGV 399 Query: 735 SI---------------QRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTT 779 I QR+KGLGEM+ QLWETTM+PE+R +++V ++DA AD +FT Sbjct: 400 KIDENAERFKQAGYTAQQRFKGLGEMDASQLWETTMNPENRTLVKVNIEDAERADAIFTK 459 Query: 780 LMGDAVEPRRAFIEENA--LKAANIDI 804 LMGD+VE R+ FI+ NA + ++D Sbjct: 460 LMGDSVELRKNFIQTNAAKVNVEDLDF 486 >UniRef50_O41065 A583L protein n=7 Tax=Chlorovirus RepID=O41065_PBCV1 Length = 1061 Score = 443 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 170/826 (20%), Positives = 292/826 (35%), Gaps = 97/826 (11%) Query: 8 SSIKVLKGLDAVRKRPGMYIGDTD--------------------DGTGLHHMVFEVVDNA 47 S + L + V RP YIG L + E++ N+ Sbjct: 2 SRYQKLTQREHVLARPDTYIGSVAPQTKNEWVYVDGKIIRKDVTYSPALLKIFDEIITNS 61 Query: 48 IDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDN 107 D ++ + SVSV +DG IP H E E+I L AG FDD Sbjct: 62 ADCYNRDKKLTVLKVCIDEKSVSVHNDGCNIPIEKHDVEKCYIPELIFGHLLAGENFDDT 121 Query: 108 SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQ-APLAVTGETEKTGTM 166 + G +G+G N S+K ++ I K ++Q +E+ + + VT ++ + Sbjct: 122 EQRTGAGRNGIGSKATNIFSKKFDVEICDGKKKYKQSWENNMSVMSKPKVTTCSKDSYIT 181 Query: 167 VRFWPSLETFT--NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKA 224 F+P E F + + I+ +R+ +++ + + V + L KR ++ E Sbjct: 182 TTFFPDFERFGIDSFDDDTMSIMVRRVYDMAAVLNKVKVMLNGKRLEIKNT---EDYFSL 238 Query: 225 FVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAG 284 +V + K E +VA+ +D F F N++ GGTH+ Sbjct: 239 YVGNKTETKRAF---------EHTPENWDVAVSCSDEFTP--VSFVNSVVT-RGGTHVNA 286 Query: 285 FRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSE 344 + K K+ + + V+ V +P F SQTK+ L S Sbjct: 287 VTD------AVAKAVVEAAAKKKIVVKPMTVKGRMFVFVNATVVNPTFDSQTKEILTSRN 340 Query: 345 VKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLP 404 + +++ + +++ +I R + +E+ + GA Sbjct: 341 ARV----TLSDTFVKK------AVGVLLDAVIQETNVRTSLVDQKELKKTDGAKKSRVSG 390 Query: 405 -GKLADC---QERDPALSELYLVEGDSAGGSAKQGR---NRKNQAILPLKGKILNVEKAR 457 KL D + L L EGDSA A G R+ + PL+GK+LNV A Sbjct: 391 IPKLNDAAWAGTNHSKMCTLILTEGDSAATLAIAGLSVVGRERYGVFPLRGKLLNVRDAS 450 Query: 458 FDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQ 517 + ++E+ L LG G+ + LRY ++IMTDADVDG+HI L++ FF+ Sbjct: 451 VASITKNEEITALKQILGLQTGKVYKDTSSLRYGHVMIMTDADVDGTHISGLVMNFFHSC 510 Query: 518 MPEIVE-RGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIAL-DGATLHTNASAPAL 575 P ++E G + P+ KKGK + + + + + Sbjct: 511 FPSLLEIPGFLKKFITPIVVAKKGKDVREFYSLPDYEDWVKTTKDYSKYQIKYYKGLGTS 570 Query: 576 AGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVS 635 + + S K L + + T E + Sbjct: 571 SSTDAKHYFSNLKTLMKTFTW---TSDSGELIDRSFNKTRAED--------RKEWMTAYE 619 Query: 636 ELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTH--GVDTDYPLDHEFITGGEYRRICTL 693 N + + + E LF R+ VD P + + R + + Sbjct: 620 PGNQLDHKKPEVPVPDFIDKELILFSRYDLERSIPSVVDGFKPSQRKVLYCAFKRNLTSD 679 Query: 694 GE--KLRGLLEEDAFIERGE--------RRQPVASFEQALDWLVKESRRGLSIQRYKGLG 743 + + G + E + GE ++WL+ E + G +Q K Sbjct: 680 VKVAQFSGYVAEHSAYHHGEVSLQGTIVNLAQDYVGSNNINWLLPEGQFGSRLQGGKDHA 739 Query: 744 EMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLM--GDAVEP 787 T ++P++R +V V D L L GD +EP Sbjct: 740 SAR---YIFTKLNPKTR---QVFVDTD---DNLLKYLYDDGDKIEP 776 >UniRef50_A5K8Q8 DNA gyrase subunit b, putative n=1 Tax=Plasmodium vivax RepID=A5K8Q8_PLAVI Length = 936 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 211/788 (26%), Positives = 320/788 (40%), Gaps = 157/788 (19%) Query: 96 TVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLA 155 T A K Y+ S GLHGVG+SV NALS +++ + R GKIH E G PL+ Sbjct: 215 TPKEAPQKSPSQMYRFSSGLHGVGLSVANALSSFMKVKVFRRGKIHSIELEKGKVVTPLS 274 Query: 156 VT-GETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDG--- 211 V K GT + + P F N E++ R+ +L++LN +S D+R Sbjct: 275 VRDCPVSKRGTQIHYRPDPTIFKNTIRHNAEMIRNRIHQLAYLNDRLSFYFYDERAAKKA 334 Query: 212 --------------------------------KEDHFHYEGGIKAFVEYLNKNKTPIHPN 239 + +EGG+ ++E L KNK + + Sbjct: 335 AAEAENAANAADLADVADHAGNTAEHNNLDFYPYEVIKHEGGLDEYMESLTKNKASLFKD 394 Query: 240 ---IFYFSTEKDGIGVEVALQWNDG-FQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNA 295 + + + +++ L+W G + E+I F NN+ DGGTH+ + A++R +N Sbjct: 395 SNKVISITCHHKNVHIDLRLKWTQGEYHEHIISFVNNVNTTDGGTHVDAMKYAISRCVN- 453 Query: 296 YMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNE 355 + K+ + + V+ G+ REG+ A++S+K+ +P+F QTK KL S +K +E + E Sbjct: 454 FNIKKNEATRNFVNIPGEYIREGMTAILSIKMNNPEFEGQTKTKLGSHFLKPILESAIFE 513 Query: 356 LLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAG-LPGKLADCQERD 414 L+E P + K + A + E A+ AR++ R K A LPGKL DC D Sbjct: 514 KLSEIFDFEPNLLNTIYLKALQAKASDEEAKAARDLIRSKNNQCYATILPGKLVDCISDD 573 Query: 415 PALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK-ARFDKMLSSQEVATLITA 473 +E+++VEGDSA GSAKQ RNR+ QAILPLKGKILNVEK ++ + E+ +LITA Sbjct: 574 INRNEIFIVEGDSAAGSAKQARNREIQAILPLKGKILNVEKIKNNKRIFENSELKSLITA 633 Query: 474 LGCGIGRDEYNPDK--------------------------------------------LR 489 +G + + K LR Sbjct: 634 IGLSVSCENSKIAKGKSTINSKKKDLKKKYDLRSGKKENAQVNNALVSKKKNPLFDTPLR 693 Query: 490 YHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDD 549 Y IIIMTDADVDG HIR LLLTF YR I++ G+V++A PPLYKV + + Sbjct: 694 YGKIIIMTDADVDGEHIRILLLTFLYRFQKNIIQNGNVFVACPPLYKVTYNRFFDATIKE 753 Query: 550 EAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQ-KMINRMERRYPKAMLKE 608 M Q+ +S +HT + + L L+ + + + + Sbjct: 754 TVMKQFNVSTKNSKTLIHTYSD------DELNVLLGLLDKDRSSHAEHRSAQLGRGK--- 804 Query: 609 LIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRT 668 PT SD++ G +V E + + V Sbjct: 805 ----PTRGGNLPSDDRGSGL-------AGLADLNFGYNGADEVTKEGELSTDDSSVANTE 853 Query: 669 HGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVK 728 + F E +R LGE + L R + V + Sbjct: 854 NADPAANSAFFTFSKRYEIQRFKGLGEMMADQLWSTTMDPRVRKLIRVTVSDA------- 906 Query: 729 ESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPR 788 M L +F+ LMG+ + R Sbjct: 907 ----------------MRANNL-------------------------IFS-LMGEDSKLR 924 Query: 789 RAFIEENA 796 ++FI EN+ Sbjct: 925 KSFILENS 932 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 60/127 (47%), Positives = 82/127 (64%), Gaps = 5/127 (3%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 N YD+ I +L+GL+AVRKRPGMYIG+TD GLH ++FE++DN++DE C EI + Sbjct: 50 CNDYDAKDIVILEGLEAVRKRPGMYIGNTD-VKGLHQILFEIIDNSVDEYNNFECNEIKI 108 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 IH D SV+++D+GRGIP +H + SA E ++TVLH+G KF D+ G S Sbjct: 109 VIHQDESVTIEDNGRGIPCDVHEKTKKSALETVLTVLHSGAKFVDDEADAQL----EGGS 164 Query: 122 VVNALSQ 128 V LS Sbjct: 165 SVGGLSD 171 >UniRef50_D2QHC5 DNA topoisomerase type IIA subunit B region 2 domain protein n=6 Tax=Bacteroidetes RepID=D2QHC5_9SPHI Length = 632 Score = 435 bits (1118), Expect = e-120, Method: Composition-based stats. Identities = 180/628 (28%), Positives = 287/628 (45%), Gaps = 62/628 (9%) Query: 4 SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGT----GLHHMVFEVVDNAIDEALAGHCKEI 59 Y+ SI+ L + +R RPGMYIG DG+ G++ ++ E +DN IDE + G K I Sbjct: 10 QYNEDSIRSLDWREHIRLRPGMYIGKLGDGSAADDGIYVLIKETIDNCIDEHVMGFGKVI 69 Query: 60 IVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 119 V + D+ V V+D GRGIP G +++ ++ GGK+D +++ S GL+GVG Sbjct: 70 EVRV-TDHRVEVRDFGRGIPLGK--------VVEVVSKINTGGKYDSGAFQKSVGLNGVG 120 Query: 120 VSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNV 179 VNALS + REGK ++ G + TE+ GT++ F P F + Sbjct: 121 TKAVNALSSYFRVQSFREGKTVWAEFDRGELKQR-GEDATTERNGTLICFEPDDTVFKHF 179 Query: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFV-EYLNKNKTPIHP 238 F + L + +LN+G++I + + + G+ + + K++ + Sbjct: 180 -HFIPQFLENMIWNYCYLNAGLTISFN------KQKYLSQNGLLDLLRDKTKKDEDSLRY 232 Query: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 I + +E+AL + + E Y F N GGTHL + A+ T+ + D Sbjct: 233 PIIHLKGND----LEIALTHGNQYGEEYYSFVNGQYTTQGGTHLNALKEAVVETVRRHFD 288 Query: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSS---------EVKSAV 349 K D R +IA VS++V +P F SQTK KL S V S V Sbjct: 289 KN---------YEVSDIRSSIIAAVSIRVQEPVFESQTKTKLGSQNMSPEPNAQSVSSFV 339 Query: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 + + E L ++L NP + + +I + R R+ +++ + KL D Sbjct: 340 KDFVKERLDDFLHMNPAVREALKKRIEQSERERKELAGIKKLANDRAKKASLHNK-KLRD 398 Query: 410 CQER-------DPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 462 C+ D S L++ EGDSA GS + RN ++QA+ L+GK LN + Sbjct: 399 CRNHLPDLKADDRYQSTLFITEGDSASGSITKSRNVQSQAVFSLRGKPLNCFGLTKKVVY 458 Query: 463 SSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIV 522 ++E L AL G + LRY+ I+I TDADVDG HIR L+LTFF + P++V Sbjct: 459 ENEEFNLLQHALDIEDG-----LEGLRYNRIVIATDADVDGMHIRLLMLTFFLQFFPDLV 513 Query: 523 ERGHVYIAQPPLYKV---KKGKQEQYIKDDEAMDQYQIS--IALDGATLHTNASAPALAG 577 GH+YI + PL++V K K+ Y ++ + A + ++ Sbjct: 514 RNGHLYILETPLFRVRNPKNHKETTYCYSEDEKQKAIDKLTKAAKKVEITRFKGLGEISP 573 Query: 578 EALEKLVSEYNATQKMINRMERRYPKAM 605 + + E + +I E PK + Sbjct: 574 DEFGLFIGENMRLEPVIMEKETSVPKLL 601 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 60/159 (37%), Gaps = 7/159 (4%) Query: 650 DVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFI-- 707 D+ E + IV VD + ++ L L + Sbjct: 471 DIEDGLEGLRYNRIVIATDADVDGMHIRLLMLTFFLQFFPDLVRNGHLYILETPLFRVRN 530 Query: 708 -ERGERRQPVASFEQALDWLVKESR--RGLSIQRYKGLGEMNPEQLWETTMDPESRRMLR 764 + + S ++ + K ++ + + I R+KGLGE++P++ E+ R+ Sbjct: 531 PKNHKETTYCYSEDEKQKAIDKLTKAAKKVEITRFKGLGEISPDEF--GLFIGENMRLEP 588 Query: 765 VTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANID 803 V ++ + +L + MG R+ FI +N ++D Sbjct: 589 VIMEKETSVPKLLSYYMGKNTPDRQRFIIDNLRIEKDVD 627 >UniRef50_Q5UQE6 DNA topoisomerase 2 n=3 Tax=root RepID=TOP2_MIMIV Length = 1263 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 134/625 (21%), Positives = 235/625 (37%), Gaps = 62/625 (9%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTDD--------------------------GTGLHHMV 40 + + + P YIG ++ GL+ + Sbjct: 15 EEKYQKKNLHEHILHSPDTYIGSIEEKTCNMWIFNESAGEDDAKIIFKEITYVPGLYKIY 74 Query: 41 FEVVDNAIDEALAGH-CKEIIVTIH-ADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVL 98 EV+ NA D C I V I +SV ++G GI IH E + +I L Sbjct: 75 DEVIVNAADHNKRCQTCNIIKVDIDQKTGQISVWNNGDGIDVAIHKEHNIWVPSMIFGEL 134 Query: 99 HAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELV--IQREGKIHRQIYEHGVPQAPLAV 156 +D N K GG +G G + N S + + +GK Q + + + Sbjct: 135 LTSTNYDKNEEKTVGGKNGFGAKLANIYSVEFTIETVDANKGKKFFQRFTNNMYDKEEPK 194 Query: 157 TGE-TEKTGTMVRFWPSLETFT--NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE 213 + + T + F P + F + + + KR+ +L+ + + + DK+ + Sbjct: 195 ISSFKKSSYTKITFIPDFKKFGLKCLDDDTLALFKKRVFDLA-MTTNAKVYFNDKQIVQN 253 Query: 214 DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNI 273 + Y G + +++K I T + V V D + F N+I Sbjct: 254 NFKKYVG---LYFPEGSQHKVVID------DTTHERWKVGVIYDPTDQLEHQNISFVNSI 304 Query: 274 PQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFS 333 GGTH+ + L + K K V +E LI V + +P F Sbjct: 305 CTSRGGTHVEQVVGQIVNGLKTAIVK----KAKNVQIKPAMIKENLIFFVDATIVNPDFD 360 Query: 334 SQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTR 393 +QTK+ L + ++ E + +++ V +II A+ARE A ++ + Sbjct: 361 TQTKEYLTKKAANFGSKFEVTEKFIKGVIKTG-----VCDQIIANAKAREEANLSKTDGK 415 Query: 394 RKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRN---RKNQAILPLKGKI 450 +G + L ++ L L EGDSA A G N R + PL+GK+ Sbjct: 416 GRGPVRYEKLYNA-HKAGTKEGYKCTLILTEGDSAKTFAMSGLNVIGRDYYGVFPLRGKL 474 Query: 451 LNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLL 510 LNV A K+ ++E+ + +G G+ + LRY SI+I+ D DVDG HI+ L+ Sbjct: 475 LNVRDASPKKIADNEEITAIKKIVGLEQGKVYDDLKGLRYGSIMILADQDVDGYHIKGLI 534 Query: 511 LTFFYRQMPEIVE-RGHVYIAQPPLY----KVKKGKQEQYIKDDEAMDQYQISIAL-DGA 564 + F + P +V+ G + PL K KQ ++ ++++ G Sbjct: 535 MNFIHCFWPSLVKYEGFIQSFATPLLKATKGKGKTKQVVAFTSPQSFEEWKKENNDGKGW 594 Query: 565 TLHTNASAPALAGEALEKLVSEYNA 589 ++ ++ ++ N Sbjct: 595 SIKYYKGLGTSDPAEAQECFADLND 619 >UniRef50_Q4RIW2 DNA topoisomerase 2 (Fragment) n=1 Tax=Tetraodon nigroviridis RepID=Q4RIW2_TETNG Length = 1568 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 111/575 (19%), Positives = 206/575 (35%), Gaps = 92/575 (16%) Query: 6 DSSSIKVLKGLDAVRKRPGMYIGDTD---------------------------------- 31 + L+ + RP YIG + Sbjct: 14 VERVYQKKTQLEHILLRPDTYIGSVEPVTQVGPGSTAPRPKTTPFLEYSCPIWFFFQQMW 73 Query: 32 --------------DGTGLHHMVFEVVDNAIDEALAGH-CKEIIVTIHAD-NSVSVQDDG 75 GL+ + E++ NA D I +TI + N++S+ ++G Sbjct: 74 VFDEEVGMNQREVTYVPGLYKIFDEILVNAADNKQRDKNMTAIKITIDPESNTISIWNNG 133 Query: 76 RGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQ 135 +GIP H +E + +I L +DD+ KV+GG +G G + N S K + Sbjct: 134 KGIPVVEHKDEKMYVPALIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETA 193 Query: 136 REGKIH--RQIYEHGVPQA-PLAVTGETEKTGTMVRFWPSLETFT--NVTEFEYEILAKR 190 + H +Q +++ + + V T V F P L F + + +L +R Sbjct: 194 CKEYRHSFKQTWQNNMTKTSEPKVKLFDGDDFTCVTFQPDLSKFKMEKLDKDTMALLTRR 253 Query: 191 LRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI 250 +++ GV + L K+ G +++V+ K+K E Sbjct: 254 AYDVAGSCRGVKVTLNGKKLPV-------NGFRSYVDLYVKDKLDETGVALKVVNETVNE 306 Query: 251 GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSA 310 EV L ++ F N+I GG H+ + L + K+ KA V+ Sbjct: 307 RWEVCLTLSEK-GFQQISFVNSIATTKGGRHIDYVVDQIVAKLIEVVKKKN---KAGVTV 362 Query: 311 TGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTD--- 367 + + V+ + +P F SQTK+ + + +++ + P Sbjct: 363 KPFQVKNHIWVFVNALIENPSFDSQTKENMTLQTKSFGSKCPLSDKFIRAVRTPPGRPSS 422 Query: 368 ------------AKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPG-----KLADC 410 + I+++ + ++ ++ ++ + + G D Sbjct: 423 CTRAVKSRCLCHLQATNCGIVESILNWVKFKAQTQLNKKCSSVKHSKIKGIPKLDDANDA 482 Query: 411 QERDPALSELYLVEGDSAGGSAKQGR---NRKNQAILPLKGKILNVEKARFDKMLSSQEV 467 + + L L EGDSA A G R + PL+GKILNV +A +++ + E+ Sbjct: 483 GGKHSSECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREATHKQIMENAEI 542 Query: 468 ATLITALGCGIGRDEYNPD---KLRYHSIIIMTDA 499 +I +G + + + LRY I+IMTD Sbjct: 543 NNIIKIVGLQYKKSYDDAESLRSLRYGKIMIMTDQ 577 >UniRef50_B2RL68 DNA topoisomerase IV B subunit n=60 Tax=Bacteria RepID=B2RL68_PORG3 Length = 644 Score = 428 bits (1100), Expect = e-118, Method: Composition-based stats. Identities = 181/631 (28%), Positives = 291/631 (46%), Gaps = 80/631 (12%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGT----GLHHMVFEVVDNAIDEALAGHC 56 + Y S IK L+ + +R+RPGMYIG DG+ G++ ++ EV+DN++DE + G Sbjct: 7 LQTEYIESDIKTLEWDEHIRRRPGMYIGKLGDGSHADDGIYVLLKEVLDNSVDEFVMGAG 66 Query: 57 KEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 116 K I +TI + +V+V+D GRGIP G ++ GGK D ++K S GL+ Sbjct: 67 KSIDITIE-NGTVTVRDYGRGIPLGK--------LVDATCKMNTGGKIDSKAFKKSVGLN 117 Query: 117 GVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETF 176 GVG+ VNALS + + + R+G+ R Y E +GT VRF P F Sbjct: 118 GVGIKAVNALSTEFVVTVWRDGQTKRVRYSRAELLEETDPVPSGEPSGTEVRFTPDDSLF 177 Query: 177 TNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPI 236 N ++ E + ++ +FLN+G+S K+ F G++ + N + Sbjct: 178 RNY-RYQEEFVVSMIKNYTFLNTGLSFFYNGKK------FLSRKGLEDLLAE-NMTGDAL 229 Query: 237 HPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAY 296 +P I T+ +E+ + + + Y F N GGTHL+ FR A+ RT+ + Sbjct: 230 YPIIHLSDTD-----IEIVVTHTQQYGDEFYSFVNGQNTTQGGTHLSAFREAVARTIKEF 284 Query: 297 MDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS-------SEVKSAV 349 K D R G+ A +S+KV +P F SQTK KL S ++ V Sbjct: 285 YSKN---------FEYSDIRSGMAAAISIKVEEPVFESQTKTKLGSRDMGPDGPTIQKFV 335 Query: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAA----RRAREMTRRKG--ALDLAGL 403 + + L +YL + A+ ++ KI + R R+A + ARE ++ L Sbjct: 336 GDFLKKELDDYLHIHTETAEEMLRKIQQSERERKAMSGITKLARERAKKSNLHNKKLRDC 395 Query: 404 PGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLS 463 L D + ++P + +++ EG+SA GS R+ QA+ L+GK LN + Sbjct: 396 TVHLNDPKAKEPERTSIFITEGNSASGSITTCRDANYQAVFSLRGKPLNCFGLTKKVVYE 455 Query: 464 SQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVE 523 ++E L AL E D LRY+ +II TDAD DG HIR L++TFF + P++V Sbjct: 456 NEEFNLLQAALNI-----EEGLDGLRYNRVIIATDADDDGMHIRLLIITFFLQFFPDLVR 510 Query: 524 RGHVYIAQPPLYKV---------------KKGKQE-----------QYIKDDEAMDQYQI 557 +GHVY+ + PL++V K+G+++ Y + Sbjct: 511 KGHVYVLETPLFRVFLPPESKKQTFGATPKRGRKKQESDMPKPVTDIYCYSEAEKQAALK 570 Query: 558 SIALDGATLHTNASAPALAGEALEKLVSEYN 588 + A + ++ E + L+ E N Sbjct: 571 QLG-KKADVTRFKGLGEISPEQFKDLIDEEN 600 Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 39/180 (21%), Positives = 75/180 (41%), Gaps = 5/180 (2%) Query: 623 EQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFI 682 E+ + V D + G + + T Q F P + + H + PL F+ Sbjct: 469 EEGLDGLRYNRVIIATDADDDGMHIRLLIITFFLQ--FFPDLVRKGHVYVLETPLFRVFL 526 Query: 683 TGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGL 742 E ++ RG ++++ + + S + L + + + R+KGL Sbjct: 527 P-PESKKQTFGATPKRGRKKQESDMPKPVTDIYCYSEAEKQAALKQLGK-KADVTRFKGL 584 Query: 743 GEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANI 802 GE++PEQ + +D E+ R+ V++K +L T MG R+ FI +N + ++ Sbjct: 585 GEISPEQFKDL-IDEENIRLEPVSLKREDKIKELLTFYMGKNTSERQEFIIDNLVVDEDV 643 >UniRef50_Q8GD47 DNA gyrase subunit B (Fragment) n=21 Tax=Bacteria RepID=Q8GD47_9MOLU Length = 393 Score = 425 bits (1092), Expect = e-117, Method: Composition-based stats. Identities = 183/394 (46%), Positives = 254/394 (64%), Gaps = 6/394 (1%) Query: 109 YKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVP-QAPLAVTGETEKTGTMV 167 YKVSGGLHGVG SVVNALS +++VI+REGK ++ G Q LA+ GE+ KTGT V Sbjct: 1 YKVSGGLHGVGASVVNALSLYVDVVIEREGKKFHMLFSDGGTAQTELAIIGESNKTGTTV 60 Query: 168 RFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVE 227 RF P E F F+Y + ++++L++LN G+ I L D+R K FH+ GI ++ Sbjct: 61 RFKPDPEIFKETVTFDYTTIRNKVKQLAYLNKGLKISLNDERINKSVDFHFPNGIVDYIR 120 Query: 228 YLNKNKTPIHPNIFYFST----EKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLA 283 N+ K I+P IFY ++ I VE+ALQ+N + EN+ F NNI +GG H Sbjct: 121 EENETKAKINPTIFYVDGKEAGDEGDIEVEIALQYNSEYNENLITFVNNINTHEGGAHED 180 Query: 284 GFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSS 343 G R A+ R +N Y +K K + DD +EG+I ++S++ DP+F QTK KL + Sbjct: 181 GLRQALVRIINRYAEKVAQQNKQPQKFSWDDIKEGMICILSIRHTDPQFEGQTKTKLANP 240 Query: 344 EVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGL 403 + K V+ + + E+L ENP DAK ++ K ++A +AR AA+RARE TRRKGALD L Sbjct: 241 DAKRVVDAILGKSFEEFLFENPNDAKAILDKNVNAQKARIAAQRAREETRRKGALDTFSL 300 Query: 404 PGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLS 463 PGKLADC+ D ++SELYLVEGDSAGGSAK GRNR QAILPL+GK+LNVE+ + + + Sbjct: 301 PGKLADCESNDSSISELYLVEGDSAGGSAKTGRNRHFQAILPLRGKVLNVERVQEVRAFA 360 Query: 464 SQEVATLITALGCGIGRDEYNPDKLRYHSIIIMT 497 + E+ +++TA+G GI D + K+RY I+IMT Sbjct: 361 NTEIKSIVTAVGTGIKED-IDLSKIRYGKIVIMT 393 >UniRef50_B1BBK7 DNA topoisomerase n=5 Tax=root RepID=B1BBK7_CLOBO Length = 1417 Score = 424 bits (1090), Expect = e-117, Method: Composition-based stats. Identities = 180/775 (23%), Positives = 325/775 (41%), Gaps = 62/775 (8%) Query: 8 SSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADN 67 + +K LKG + VRKR + +G DD G H +FE+V N+ID G I V H D Sbjct: 2 ADLKRLKGSERVRKRVSVMMGS-DDIRGCQHTLFEIVSNSIDRHRKGFGNYIKVIKHEDL 60 Query: 68 SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALS 127 S ++ D G+P + +E ++ + VL+AG +D NS + G++G+G+ S Sbjct: 61 SYTIIDHADGLPMDWNDKENAYNWDLALKVLYAGDNYDANS--TALGINGLGLCSSQYAS 118 Query: 128 QKLELVIQREGKIHRQIYEHGVPQAP-----------------------LAVTGETEKTG 164 + +E+V ++ K + + G P L + KTG Sbjct: 119 EYMEVVSYKDDKKYTVKCKKGRPIDKNTGEFICEDDDTLFAREQGQRVLLVESNSENKTG 178 Query: 165 TMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKA 224 T + + P LE FTN+ + + + +L + + +N + I + D+++ K +YE GIK Sbjct: 179 TYIHYKPDLEVFTNI-DISIDWINDKLDKQAMVNKELKIEVYDEKEDKLYTHYYESGIKD 237 Query: 225 FVEYLNKNKTPIHPNIFYF----------STEKDGIGVEVALQWNDGFQENIYCFTNNIP 274 +++ ++ + ++ YF + E+AL +N+ + + N+ Sbjct: 238 YIKTISDDNN--FSDVIYFTEKGKGRDKVDKPEYDYNYEIALVFNNEIN-KLEYYHNSSE 294 Query: 275 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 334 GG+ A T +N Y K + D ++ LI V+S +++ Sbjct: 295 LLQGGSTADAINLAFTYAINEYAKDNNLFNKNESKIKFTDIQDSLICVISSFSTMTSYAN 354 Query: 335 QTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRR 394 QTK + + +K Q + E L Y +EN +A +V +I+ RA + A + + ++ Sbjct: 355 QTKLSIDNKFIKDFTNQSLKEKLKLYFIENKLEAGRIVNQILINKRANDKAEKTKLNIKK 414 Query: 395 K-GALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 453 C D +++ELYL EG SA GS GRN K QA + GK+L++ Sbjct: 415 TLQTKSNFDDTDNFYACTSNDKSITELYLAEGSSAQGSIVMGRNSKFQACYHVGGKMLSL 474 Query: 454 EKARFDKMLSSQEVATLITALGCGI--------GRDEYNPDKLRYHSIIIMTDADVDGSH 505 KA F+K+ ++ V L LGCGI + ++ + L Y II+ TD D D Sbjct: 475 LKADFEKIFKNKVVRELFQYLGCGIEIKSKHNKDLNTFDENNLNYSKIILATDQDTDAFQ 534 Query: 506 IRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGAT 565 IR L+LT YR P +++ G+VYIA+ PLY++ + + +E ++ G Sbjct: 535 IRCLMLTAIYRLAPTLIKHGYVYIAESPLYEITTADKVYHAYTEEEKITILEELSKKGIK 594 Query: 566 LHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQT 625 + GE ++ + M+N R+ + ++++ E L DE Sbjct: 595 -YDKPERNKGLGEVDSDII-----AETMMNPKTRKITRVTVQDVEKMANTFELWLGDEVK 648 Query: 626 VTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGG 685 + + + + + + + L E + + + + Sbjct: 649 PRK------EVITSNFDYIEHFDNEQEKDIVKVLNENYLPYAIEVIKERAIISIDGFKPA 702 Query: 686 EYRRICTLGEK-LRGLLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRY 739 + + TL E L + A I V + LV+ +++ + Y Sbjct: 703 HRKLLWTLHESNLYNKRTKSAHIVGSNMSLNVHGDGSIYETLVRMAQKDTLLYPY 757 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 68/197 (34%), Gaps = 6/197 (3%) Query: 613 PTLTEADLSDEQTVTRW---VNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTH 669 + +D + + + E K + + I+ Sbjct: 469 GKMLSLLKADFEKIFKNKVVRELFQYLGCGIEIKSKHNKDLNTFDENNLNYSKIILATDQ 528 Query: 670 GVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKE 729 D + I ++ + E+ + L + Sbjct: 529 DTDAFQIRCLMLTAIYRLAPTLIKHGYVYIAESPLYEITTADKVYHAYTEEEKITILEEL 588 Query: 730 SRRGLSI---QRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVE 786 S++G+ +R KGLGE++ + + ET M+P++R++ RVTV+D F +GD V+ Sbjct: 589 SKKGIKYDKPERNKGLGEVDSDIIAETMMNPKTRKITRVTVQDVEKMANTFELWLGDEVK 648 Query: 787 PRRAFIEENALKAANID 803 PR+ I N + D Sbjct: 649 PRKEVITSNFDYIEHFD 665 >UniRef50_B2ZYK3 Type IIA topoisomerase n=1 Tax=Ralstonia phage RSL1 RepID=B2ZYK3_9CAUD Length = 882 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 186/835 (22%), Positives = 317/835 (37%), Gaps = 72/835 (8%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 YDS+SI+ + VR P MYIG D GL + E++DN DE +A + + Sbjct: 7 TKYDSTSIETQRFPHNVRASPAMYIGGVD-AYGLWTVTKELLDNGADEFMAQRNDAVFLH 65 Query: 63 IHADNSVSVQDDGRGIPTGIHP----------EEGVSAAEVIMTVLHAGGKFDDNSYKVS 112 AD S V D G GIP G+ + + + + LH GK+ +Y VS Sbjct: 66 FDADGSYWVWDHGHGIPQGVKTFKLNLNGKVVTQKMPTMQAVFGELHTSGKYRSEAYAVS 125 Query: 113 GGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAV-------TGETEKTGT 165 G HGVG NA ++ ++ EG+ ++ G P+ TG+ K GT Sbjct: 126 IGSHGVGSKGTNATAEYFDVWTLYEGRWSSIKFKKGELAQPVKECSAPKLPTGKPLKKGT 185 Query: 166 MVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAF 225 ++ F P F+ V F + + +S++N G+SI L K+ + + G + + Sbjct: 186 LIHFKPDASIFS-VKSFPPSMAVEWATVMSYMNPGLSIHLSSKK--GAKTYLSKKGPQEY 242 Query: 226 VEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGF 285 +E+ F D V +A DG I TN++ GG H+ Sbjct: 243 IEH-RLAALKTEGERQMFVHHDDLSDVVLAFTNYDGCD--IRGMTNSVTNGQGGKHVDSV 299 Query: 286 RAAMTRTLNAYMDKEGYSKKAKVSATG----DDAREGLIAVVSVKVPDPKFSSQTKDKLV 341 A+ L ++ + + KV D +EGL+ +V+ K+ +FSSQ K +L Sbjct: 300 TGAVYAGLKPWIKTKKVKEDGKVKVVPAFRETDLKEGLVGLVNAKLHKAQFSSQDKARLT 359 Query: 342 SSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLA 401 + + E+ + + + EN A+ + + + +++ A+ Sbjct: 360 DNRLGKDYEEAITKKFVAFFKENKALAQRLCDRATKLNELKTKFTMSKKAAATLNAVKRN 419 Query: 402 GLPGKLADCQE-RDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 460 GLP K A EL+LVEGDSAGGS K R QA+LPLKGK+LN K K Sbjct: 420 GLPAKYAAFNSDTKVHDRELFLVEGDSAGGSLKDAR-LPYQAVLPLKGKVLNALKDNKGK 478 Query: 461 MLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQ--- 517 L S E+ ++ A+G KL II + D D DG + + F Y++ Sbjct: 479 ALESDEIINILAAIGYDTKA-ADPLSKLTVGKIICLADPDPDGPFVADTQVRFRYKRTAN 537 Query: 518 --MPEIVERGHV-YIAQPP----LYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNA 570 P++ + +A P V +EQ+ +++ + Sbjct: 538 DGQPQLATIECLAEMANTPGQEFEVPVYVNGKEQWAPATAQLER------NVDTLVSMEI 591 Query: 571 SAPALAGEALEKLVSEYNATQKMINRMER-------RYPKAMLKELIYQPTLT----EAD 619 K + + + + R + + +Y P + + + Sbjct: 592 GGHKYKVSEDHKFLVIRTPSTRNREGLTFSEHLCFMRAADMNIGDRVYAPHMEQGRRDYN 651 Query: 620 LSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDH 679 D+ + ++ + + + V + F + GV + + Sbjct: 652 RQDKTSGHGFMAVNKLRVQKQSAPVPVYCLTV---PRHHHF-----LLPSGVVSSNCHIN 703 Query: 680 EFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASF--EQALDWLVKESRR-GLSI 736 + G Y+ + L +K + + Q V L K +I Sbjct: 704 SLLLGLFYKYLPDLFDKGMVYVSAAPEFYSIYKDQLVTGDTLSAVQVKLKKLKAPTSTAI 763 Query: 737 QRYKGLGEMNPEQLWETTMDPESRRMLRVT-VKDAIAADQLFTTLMGDAVEPRRA 790 KG GE + + DP +RR++++ + D F +M + VE RR Sbjct: 764 HHLKGWGEASENLMRVLAADPATRRLIKIKAISHDDKVD--FVKVMNEDVEYRRR 816 >UniRef50_C7PPD8 DNA topoisomerase type IIA subunit B region 2 domain protein n=23 Tax=Bacteria RepID=C7PPD8_CHIPD Length = 640 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 180/631 (28%), Positives = 293/631 (46%), Gaps = 63/631 (9%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGT----GLHHMVFEVVDNAIDEALAGHC 56 +S +Y SI+ L + +R RPGMYIG DG+ G++ ++ EV DN IDE G Sbjct: 9 LSAAYTEDSIRSLDWREHIRLRPGMYIGKLGDGSSMDDGIYILLKEVADNCIDEHTMGFG 68 Query: 57 KEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 116 K+I + + +++V+++D GRGIP G +++ ++ G K+D +++ S GL+ Sbjct: 69 KQIDIRV-TEHNVTIRDYGRGIPLGK--------VVDVVSKINTGAKYDSKAFQKSVGLN 119 Query: 117 GVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETF 176 GVG VNALS + REG+ +E G +E GT+V F P F Sbjct: 120 GVGTKAVNALSSYFRVESFREGRGKVAEFERGNLTKEHKEANTSEPNGTLVTFTPDDTVF 179 Query: 177 TNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPI 236 N F E L ++ FLN+G++I K+ + + G+ ++ Sbjct: 180 RNY-RFIPEFLENQIWNYCFLNAGLTISFNGKK------YISKNGLLDLLQRKTNEDELR 232 Query: 237 HPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAY 296 +P I + E +EVA+ + + E Y F N GGTHLA FR A +TL + Sbjct: 233 YP-IIHLKGED----IEVAITHENQYGEEYYSFVNGQHTTQGGTHLAAFREAFVKTLRDF 287 Query: 297 MDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS-------SEVKSAV 349 K D R + A +SV+V +P F SQTK KL S +K+ V Sbjct: 288 YKK---------DYEATDIRASICAAISVRVQEPVFESQTKTKLGSLTVFENGPSMKAFV 338 Query: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 +++ L ++L +NPT A+ + +I + R R+ +++ + KL D Sbjct: 339 LDFLSKHLDDFLHKNPTTAEALKKRIEQSERERKELAGIKKLANERAKKANLHN-RKLRD 397 Query: 410 CQ---------------ERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 454 C+ E + +++ EGDSA GS + RN + QA+ L+GK LN Sbjct: 398 CRIHLNEEVSGKDKNDLETKRLNTTIFITEGDSASGSITKSRNVETQAVFSLRGKPLNSF 457 Query: 455 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFF 514 + ++E L AL E + LRY+ I++ TDADVDG HIR LLLTFF Sbjct: 458 GLTKKIVYENEEFNLLQHALNI-----EEGLEGLRYNRIVVATDADVDGMHIRLLLLTFF 512 Query: 515 YRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPA 574 + P++V+ GH+YI + PL++V+ +Q Y DE + + + Sbjct: 513 LQFFPDLVKNGHLYILETPLFRVRNKQQTIYCYTDEERIKAIKKLGNKP-EITRFKGLGE 571 Query: 575 LAGEALEKLVSEYNATQKMINRMERRYPKAM 605 ++ + +++ + +I + K + Sbjct: 572 ISPDEFANFINDDMKVEPVILSKDTHIQKLL 602 Score = 99.1 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 3/152 (1%) Query: 651 VHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERG 710 + E + IV VD + ++ L L + Sbjct: 479 IEEGLEGLRYNRIVVATDADVDGMHIRLLLLTFFLQFFPDLVKNGHLYILETPLFRVRNK 538 Query: 711 ERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDA 770 ++ + E+ + + K I R+KGLGE++P++ D ++ V + Sbjct: 539 QQTIYCYTDEERIKAIKKLGN-KPEITRFKGLGEISPDEFANFIND--DMKVEPVILSKD 595 Query: 771 IAADQLFTTLMGDAVEPRRAFIEENALKAANI 802 +L MG + R+ FI N ++ Sbjct: 596 THIQKLLEYYMGKNTQTRQEFIIGNLRYEKDL 627 >UniRef50_C7U0P4 DNA topoisomerase II n=2 Tax=unclassified Phycodnaviridae RepID=C7U0P4_9PHYC Length = 1072 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 126/649 (19%), Positives = 232/649 (35%), Gaps = 70/649 (10%) Query: 8 SSIKVLKGLDAVRKRPGMYIGDTD----------------------DGTGLHHMVFEVVD 45 S++ L ++ V KRP Y+G + L + E++ Sbjct: 3 ESVQKLTHIEHVLKRPDSYVGPVEIGCEPYWIFQKTDNQFKKKSLNYSPALLKIFDEILV 62 Query: 46 NAIDEALAGH--CKEIIVTIHAD-NSVSVQDDGR--GIPTGIHPEEGVSAAEVIMTVLHA 100 NAID C I I + +V+++++G G+ +H +EG+ E+ L Sbjct: 63 NAIDRNSLHPKSCTLISAGIDKETGAVTIENNGPLGGVGVRMHEKEGIWNPELTFGHLLT 122 Query: 101 GGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRE--GKIHRQIYEHGVPQAPLAVTG 158 +DDN ++ GG +G G + N S + +VI+ + + Q + + + Sbjct: 123 STNYDDNKKRIVGGRNGYGAKLTNIYSSEFSIVIKDGETKQCYTQKWNNNMTVCHPPKIT 182 Query: 159 E--TEKTGTMVRFWPSLETFTNVTEFE--YEILAKRLRELSFLN-SGVSIRLRDKRDGKE 213 + + + F P + F Y+I KR+ + + ++ + + K Sbjct: 183 KHSASTSSVSITFIPDWKRFGMNKMDNNIYKIFEKRVWDANICTTPNCKVKFQGEALPKT 242 Query: 214 DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNI 273 Y +H + S+ V + ++ E F N I Sbjct: 243 SFEAYAK---------------MHEGVSEVSSVTTD-RWSVCIGPSENGLEQ-VSFVNGI 285 Query: 274 PQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFS 333 GGTH+ + + + M K K+ + V + +P FS Sbjct: 286 CTTKGGTHVDHVASYIASGIIDEMAK-------KIKLKPQQVKNTFNIFVKATLENPTFS 338 Query: 334 SQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTR 393 SQ K + S + + + + L+ + ++ ++ +E + Sbjct: 339 SQVKSECTSKAQDFGSKFEPPKNFVKNALKTG-----IQEELTALSKFKEMKELKKTDGA 393 Query: 394 RKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGR---NRKNQAILPLKGKI 450 RK + L + EGDSA A G R + + PL+GK Sbjct: 394 RKSKITGIPKLDDANKAGTAQSGKCTLIVTEGDSAKTLAVAGLSVVGRDHYGVFPLRGKC 453 Query: 451 LNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLL 510 NV A ++ S+QE L LG G+D + +LRY ++IMTDAD DGSHI+ L+ Sbjct: 454 KNVRDASVAQLTSNQEFNDLKKILGLQQGKDYQDVSELRYGRLMIMTDADNDGSHIKGLI 513 Query: 511 LTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNA 570 L + P +++ G V P+ K KG Q + D A + + G + Sbjct: 514 LNMIHYFWPSLLKLGFVVSMVTPIIKASKGTQSKSFYTDSAFRSWYGNGQP-GWKIKYYK 572 Query: 571 SAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEAD 619 + + + M+ K+++ L + + Sbjct: 573 GLGTSTSAEAREYFKKI-QDLTVKFDMDIMTDKSIV--LAFDKKKADDR 618 >UniRef50_Q59189 DNA topoisomerase 4 subunit B n=27 Tax=Bacteria RepID=PARE_BORBU Length = 599 Score = 418 bits (1074), Expect = e-115, Method: Composition-based stats. Identities = 177/587 (30%), Positives = 289/587 (49%), Gaps = 47/587 (8%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGT----GLHHMVFEVVDNAIDEALAGHCK 57 + +YD S I L L+ +R R GMYIG DG+ G++ ++ E++DN+IDE + G+ Sbjct: 3 TQNYDESKIITLSSLEHIRLRSGMYIGRLGDGSNIDDGIYVLIKEIIDNSIDEFIMGYGN 62 Query: 58 EIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHG 117 EI + +N +S++D GRGIP G E ++V++ G K++D+ ++ S GL+G Sbjct: 63 EIFIK-KENNLISIRDYGRGIPLGKVIES--------VSVINTGAKYNDDVFQFSVGLNG 113 Query: 118 VGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFT 177 VG VNALS K + R GK ++ G ++K GT V F E F Sbjct: 114 VGTKAVNALSSKFLVRSTRNGKSFEALFSKGKLL-ESREIKSSDKDGTYVEFLADSEIFG 172 Query: 178 NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIH 237 + + + L +R + LN G+ I D F + G+ F+ K+ ++ Sbjct: 173 KYS-YSEDFLKRRFFHYACLNKGLIINYND------QIFESKNGLLDFLNSEIKSDDLLY 225 Query: 238 PNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYM 297 ++Y S +E A + + E + F N DGGTH GFR R +N ++ Sbjct: 226 DIVYYSSK-----TLEFAFSHTNNYGETYFSFVNGQYTNDGGTHQTGFREGFVRAINDFL 280 Query: 298 DKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELL 357 K + + D REGL+A +SVK+ DP F SQTK+KL + E + V +++ +++ Sbjct: 281 KK---------TYSSTDIREGLVATLSVKIKDPIFESQTKNKLGNIETRGNVAKEVQKII 331 Query: 358 AEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADC------Q 411 +E L ++ AK++ K++D R R+ R+ R + +P KL DC Sbjct: 332 SEILYKDKILAKLIEKKVVDNERLRKELSSVRKEARERAKKISFKIP-KLKDCKFHFNDS 390 Query: 412 ERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLI 471 + + ++L EGDSA GS R+ QAI L+GK N+ + ++ ++E+ ++ Sbjct: 391 SKQSEQTMIFLTEGDSATGSMVSCRDVYTQAIFSLRGKPQNMFEKNKSEIYKNEELYNMM 450 Query: 472 TALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQ 531 ALG E + + LRY+ ++I TDAD DG HIR LLLTFF +++ GH+YI + Sbjct: 451 VALGI-----EESIENLRYNKVVIATDADFDGFHIRNLLLTFFLTFFEDLILNGHMYILE 505 Query: 532 PPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGE 578 PL++V+ K Y +E + + + E Sbjct: 506 TPLFRVRNKKITTYCYSEEEKQKAILELKGGCEVTRFKGLGEISPNE 552 Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 32/248 (12%), Positives = 73/248 (29%), Gaps = 5/248 (2%) Query: 550 EAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKEL 609 + + + + + T + + + Sbjct: 357 KELSSVRKEARERAKKISFKIPKLKDCKFHFNDSSKQSEQTMIFLTEGDSATGSMVSCRD 416 Query: 610 IYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTH 669 +Y + + ++E + + + E + +V Sbjct: 417 VYTQAIFSLRGK---PQNMFEKNKSEIYKNEELYNMMVALGIEESIENLRYNKVVIATDA 473 Query: 670 GVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKE 729 D + + + L + +LE F R ++ E+ + E Sbjct: 474 DFDGFHIRNLLLTFFLTFFEDLILNGHMY-ILETPLFRVRNKKITTYCYSEEEKQKAILE 532 Query: 730 SRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRR 789 + G + R+KGLGE++P + +D S ++ +V + + + MG RR Sbjct: 533 LKGGCEVTRFKGLGEISPNEFK-GFIDINSIKLTKVDLFNIKEIKEKLGFYMGQNTPERR 591 Query: 790 AFIEENAL 797 FI EN + Sbjct: 592 NFIMENLI 599 >UniRef50_A1EGM8 DNA gyrase subunit B (Fragment) n=1 Tax=uncultured bacterium RepID=A1EGM8_9BACT Length = 428 Score = 418 bits (1074), Expect = e-115, Method: Composition-based stats. Identities = 208/436 (47%), Positives = 272/436 (62%), Gaps = 25/436 (5%) Query: 92 EVIMTVLHAGGKFDDN----SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEH 147 EVIMTVLHA GKFD+ +YK SGGLHGVG SVVNALS +L + I+R+G Q + Sbjct: 1 EVIMTVLHAAGKFDNETGESAYKTSGGLHGVGASVVNALSTRLTMEIKRDGFTWHQEFRG 60 Query: 148 G-VPQAPLAVTGETEKTGTMVRFWPSLETF-----TNVTEFEYEILAKRLRELSFLNSGV 201 G P A LA+ + + GT +RFWP F + F+ E +A+ L + LN G+ Sbjct: 61 GGEPVAELAMGKPSREHGTTIRFWPDPTIFVPEEGQDPLSFDKERVARSLSTRAHLNPGL 120 Query: 202 SIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIF-------YFSTEKDGIGVEV 254 +I + D+RDG E + E +F E L+ T +F T+K + V V Sbjct: 121 AITMIDERDGSEQTWKAE----SFAEILDDLATVSSAPVFGPLSETAAVDTDKGRVEVMV 176 Query: 255 ALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDD 314 AL+ + I + NNI GGTH AG R+A+ + +NAY G K+ T +D Sbjct: 177 ALRVHAERASTIASYANNIVTPQGGTHEAGMRSALLKAINAYGKTNGLLKEP---LTAED 233 Query: 315 AREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGK 374 +EGL+A V+V+V +P F+ QTKDKL ++E AV Q + LL+++ ENP DAK ++ + Sbjct: 234 VQEGLVAAVAVRVTEPLFAGQTKDKLANTECTGAVMQVVYRLLSKHFEENPKDAKNLINR 293 Query: 375 IIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQ 434 AA+AR AA +ARE+ RK L GLPGKLADCQE DP+L ELY+VEGDSAGGSAKQ Sbjct: 294 AALAAKARAAAEKARELVERKNPLSGGGLPGKLADCQESDPSLCELYIVEGDSAGGSAKQ 353 Query: 435 GRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSII 494 GR+RK QAILPLKGK LNV K K L SQE++ + T LGCG+ + ++ KLRYH +I Sbjct: 354 GRDRKFQAILPLKGKPLNVMKYDMGKALKSQEISNITTVLGCGV-LNTFDISKLRYHRVI 412 Query: 495 IMTDADVDGSHIRTLL 510 IMTDADVDGSHIRTLL Sbjct: 413 IMTDADVDGSHIRTLL 428 >UniRef50_Q7RHG3 DNA topoisomerase II, putative n=3 Tax=Plasmodium (Vinckeia) RepID=Q7RHG3_PLAYO Length = 930 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 210/748 (28%), Positives = 322/748 (43%), Gaps = 134/748 (17%) Query: 100 AGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVT-G 158 + YK S GLHGVG+SV NALS +++ + R+ KI+ E G L V Sbjct: 263 NKTNENLQKYKYSSGLHGVGLSVSNALSTFMKVNVFRDNKIYNIELEKGKVVKELNVQDC 322 Query: 159 ETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE----- 213 +K GT + + P F + E + RL +L++LN ++ D+R+ + Sbjct: 323 PIKKRGTQIHYKPDNTIFKTNIKHNSEFIKNRLHQLAYLNDKLTFYFYDERNSNKGNSDK 382 Query: 214 ------------------DHFHYEGGIKAFVEYLNKNKTPIHP---NIFYFSTEKDGIGV 252 + +EGG+ ++E L KNKT I + S + I V Sbjct: 383 VSENVENNSYTKLDNYEYEIIKHEGGLDEYMEKLTKNKTNIFKTNNKVISISCFQKNIHV 442 Query: 253 EVALQW-NDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSAT 311 ++ L+W + + ENI F NN+ DGGTH+ + A++R++N Y K+ + K V+ Sbjct: 443 DLKLKWVTNQYNENILSFVNNVNTIDGGTHVDAMKYAISRSIN-YNVKKNETIKNFVNIP 501 Query: 312 GDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIV 371 G+ REGL A++S+K+ +P+F QTK KL S +K +E + E L+E P + Sbjct: 502 GEYIREGLTAILSIKMNNPEFEGQTKTKLGSYYLKPILESIIFEKLSEIFDFEPNLLNTI 561 Query: 372 VGKIIDAARAREAARRAREMTRRKGALDLAG-LPGKLADCQERDPALSELYLVEGDSAGG 430 K + A ++ E A+ AR++ R K + LPGKL DC D + +E+++VEGDSA G Sbjct: 562 YLKALQAKKSDEEAKAARDLIRSKNNQYYSTILPGKLVDCISDDISKNEIFIVEGDSAAG 621 Query: 431 SAKQGRNRKNQAILPLKGKILNVEK-ARFDKMLSSQEVATLITALGC------------- 476 SAKQ RNR+ QAILPLKGKILNVEK K+ + E+ +LITA+G Sbjct: 622 SAKQARNREIQAILPLKGKILNVEKIKNNKKIFENIELKSLITAIGLNVNYDNSKTGKSN 681 Query: 477 --------GIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVY 528 I ++ + LRY IIIMTDADVDG HI LLLTF YR EI+E G+VY Sbjct: 682 TNKRNDNKDIKKNNFIDTSLRYGKIIIMTDADVDGEHICILLLTFLYRFQKEIIENGNVY 741 Query: 529 IAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYN 588 +A PPLYKV K D + ++ ++ +HT + + E L L + Sbjct: 742 VACPPLYKVTYNKFFDNNIKDSVISKFNVTTKASKYIIHTYSDSE--LNELLALLDMDKA 799 Query: 589 ATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWK 648 + N +++R + L +LN + Sbjct: 800 QILENKNILKKRKKENFLNG-------------------------QGKLNITHDDENNTN 834 Query: 649 FDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIE 708 FD + + + ++ V E +R LGE + L Sbjct: 835 FDPQNDQDNSEQNQTNSFISNDV------IFSSSKKYEIQRFKGLGEMMADQLWSTTMDP 888 Query: 709 RGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVK 768 + + V + + L Sbjct: 889 QVRKLIRVTVSDA-----------------------IKANNL------------------ 907 Query: 769 DAIAADQLFTTLMGDAVEPRRAFIEENA 796 +LMG+ + R+ FI +N+ Sbjct: 908 --------INSLMGEDSKSRKDFIIKNS 927 Score = 136 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 57/106 (53%), Positives = 78/106 (73%), Gaps = 1/106 (0%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 N+YD+ I +L+GL+AVRKRPGMYIG+TD GLH ++FE+VDNA+DE C +I V Sbjct: 110 CNNYDAKDIVILEGLEAVRKRPGMYIGNTD-SKGLHQILFEIVDNAVDEYNNHECNQIKV 168 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDN 107 IH D S++++D+GRGIP IH + SA E ++TVLH+G KF D+ Sbjct: 169 IIHNDESITIEDNGRGIPCDIHEKTKKSALETVLTVLHSGAKFLDD 214 >UniRef50_C9S837 DNA topoisomerase 2 n=2 Tax=Sordariomycetes RepID=C9S837_VERA1 Length = 1688 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 118/717 (16%), Positives = 235/717 (32%), Gaps = 131/717 (18%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTD----------------------DGTGLHHM 39 + + + L L+ + KRP YIG + GL+ + Sbjct: 118 TKKTVEETYQKLTQLEHIVKRPDTYIGSVERTEMPMWVYNKETQLMEFRKVTTVPGLYKI 177 Query: 40 VFEVVDNAID------EALAGHCKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAE 92 E++ NA D E+ I V I + +S+++ Sbjct: 178 FDEILVNAADIKVRREESGEEPVTHIKVNIDREAGQISIEN------------------- 218 Query: 93 VIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQ- 151 +G G+ + + ++ I+ + + + Sbjct: 219 -----------------------NGKGIP----------VEMHKQHGIY--TWTDNMSKM 243 Query: 152 APLAVTGETEKTGTMVRFWPSLETFTN--VTEFEYEILAKRLRELSFLNSGVSIRLRDKR 209 +T + F P + F+ + + +L +R+ +++ G+ + L Sbjct: 244 GKAKITSSKSSDFVRITFKPDFKRFSMEGIDDDLEALLYRRVYDMAGTIKGIKVHLNGTV 303 Query: 210 DGKEDHFHYEGGIKAFVEYLNKNKTPIH---PNIFYFSTEKDGIGVEVALQWNDGFQENI 266 ++G + + + + K + P + + D +V +DG Sbjct: 304 VKPS---AFKGYSEMYAKAIAKERASEEGGEPKVTVEMDKNDNPRWDVGFTVSDG-SFQH 359 Query: 267 YCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVK 326 F NNI GGTH+ + + L Y+DK KK + R + ++ + Sbjct: 360 ISFVNNIATTSGGTHVNYVADQIVQYLTKYLDK----KKKGHALKPQHIRNHIFVFINCR 415 Query: 327 VPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAAR 386 + +P F+SQTK+++ + + ++E + + I + + Sbjct: 416 IENPSFNSQTKEQMTTKISSFGSKCVLSEAFLKKVA---------ASDAIQNIMSFAEKK 466 Query: 387 RAREMTRRKGALDLAGLPGKLADCQ---ERDPALSELYLVEGDSAGGSAKQGR---NRKN 440 + M + G KL D + L L EGDSA A GR + Sbjct: 467 ADKMMAKSDGNRRSRINNAKLVDANLAGTKRGHECTLILTEGDSAKSLAVAGRAILDPDR 526 Query: 441 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDAD 500 + PL+GK+LNV A +++ +QE+ + LG ++ + LRY ++IM D D Sbjct: 527 IGVFPLRGKMLNVRDASIEQITKNQEIQNIKQFLGLKHKQNYTDTKGLRYGHLMIMADQD 586 Query: 501 VDGSHIRTLLLTFFYRQMPEIVERG-HVYIAQPPLYKVKKGKQEQY------IKDDEAMD 553 DGSHI+ LL+ F Q P +++ P+ KV +GK + + Sbjct: 587 HDGSHIKGLLINFLQVQYPSLLQIPDFFREFITPIVKVWQGKNPKNPQKLQAFFTQPQYE 646 Query: 554 QYQISIALD--GATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIY 611 +++ + + + E Q ++ + + Sbjct: 647 EWKEAHKNEISRWEYKYYKGLGTSSNED----------AQVYFTNLDDHLKEFDTMQSSE 696 Query: 612 QPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRT 668 A + + + +D N E LF +R+ Sbjct: 697 ADLFDLAFSKKKADARKEWLGNFVPGTYLDHSTKSITYDDFVNRELILFSMADNMRS 753 >UniRef50_D0NA12 DNA topoisomerase 2 n=1 Tax=Phytophthora infestans T30-4 RepID=D0NA12_PHYIN Length = 1505 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 130/730 (17%), Positives = 248/730 (33%), Gaps = 134/730 (18%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTD----------------------DGTGLHHMVFEVV 44 + L+ + RP Y+G + GL+ + E++ Sbjct: 99 EQIYQKKTQLEHILLRPDTYVGSIEHVEQSMWVFDDEKQRMVLKKINYVPGLYKIFDEII 158 Query: 45 DNAIDEALAGH-CKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGG 102 NA D + VTI + N +SV ++G+GIP +H E V E+I L G Sbjct: 159 VNACDNKQRDKSMNTLKVTIDVEKNEISVWNNGKGIPIVLHKEHKVYVPELIFGHLLTGS 218 Query: 103 KFDDNSYKVSGGLHGVGVSVVNALSQKLELV--IQREGKIHRQIYEHGVPQA-PLAVTGE 159 FDD K +GG +G G + N S + + + ++Q++E + + P ++T Sbjct: 219 NFDDKKKKTTGGRNGYGAKLANIFSNEFVVETADSSTKQKYKQVFESNMSKKNPPSITKW 278 Query: 160 TEKTGTMVRFWPSLETFT--NVTEFEYEILAKRLRELSFLN-SGVSIRLRDKRDGKEDHF 216 +K T + F P LE F + + + KR+ +++ ++ G+++ L + + Sbjct: 279 AQKDFTCISFKPDLERFKLDFLNDDIVSLFKKRVYDVAGVSGKGMNVFLNGDKIPIKSFP 338 Query: 217 HYEG---GIKAFVEYLNKNKTPIHPNI-------------------------------FY 242 Y G + + +K+ HP+ Sbjct: 339 QYVALYPGPRGYEADKDKDDEDAHPDENGDDDDEDYSEDKAKKAKAARAKPSNVTKNGVI 398 Query: 243 FSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGY 302 F + V V + DGFQ+ H++ +T L + + K+ Sbjct: 399 FEKPDERWQVGVGMS-EDGFQQ----------------HVSYIVDQITAKLVSVLKKKN- 440 Query: 303 SKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLL 362 + + + + VS + +P F SQTK+ L + +++ + L Sbjct: 441 ---KGEAVKPNYIKNHMFVYVSALIDNPAFDSQTKETLTTRANSFGSTFNLSDKFLKQLE 497 Query: 363 ENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQ---ERDPALSE 419 ++ +V KI+ A ++ A R+ L G+P KL D Sbjct: 498 KSG-----LVEKILSFAAFKQTAELRRKGGSSGKRSRLTGIP-KLDDANHAGTAKSKDCT 551 Query: 420 LYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIG 479 L L EGDSA +L ++E+ ++ LG G Sbjct: 552 LILTEGDSA------------------------------KTILKNEEIQNVVKILGLKYG 581 Query: 480 RDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIV-ERGHVYIAQPPLYKVK 538 + + LRY ++IM D D DGSHI+ L++ + P ++ G + P+ K Sbjct: 582 QKYESTKGLRYGHLMIMADQDHDGSHIKGLVINLIHHFWPSLLVVDGFLQEFITPIVKCT 641 Query: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598 KG+ ++ + ++ + + A K + + ++ Sbjct: 642 KGRTKEVFYTMPEYEAWRERTNQGRGWVIKYYKGLGTSTAAETK---------EYFSDLQ 692 Query: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658 + A + + + + N E Sbjct: 693 THQIGFTYDGDGDADVIDMAFSKKRVEDRKDWLRGYEPGTYVDYDVDEMGYTEFVNKELI 752 Query: 659 LFEPIVRVRT 668 LF +R+ Sbjct: 753 LFSMADNIRS 762 >UniRef50_C8XUB6 Topoisomerase II large subunit n=1 Tax=Shigella phage phiSboM-AG3 RepID=C8XUB6_9CAUD Length = 637 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 126/632 (19%), Positives = 237/632 (37%), Gaps = 68/632 (10%) Query: 1 MSNSYD-SSSIKVLKGLDAVRKRPGMYIGDT-----------------------DDGTGL 36 MS+ D K L ++ + RP ++G + L Sbjct: 1 MSDKIDIERKYKKLTHVEHILLRPERHLGSIRSSVGTVWVYDPTKDQVIFRDNFEYSPAL 60 Query: 37 HHMVFEVVDNAIDEALAGHCK---EIIVTIHA-DNSVSVQDDGRGIPTGIHPEEGVSAAE 92 E++ N +D + K EI VT+ + + V D+G GIP H E Sbjct: 61 IKQFDEIITNCVDHSKTPEGKSLTEITVTVSPMNGQIIVADNG-GIPVVKHGVTNEWLPE 119 Query: 93 VIMTVLHAGGKFDDNSYKV----SGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHG 148 ++ L+AG F+D + SGG +G G S+VN S+ + K + Q++E Sbjct: 120 MLFGSLYAGSNFNDEDEEYNNQKSGGQNGEGASLVNVFSKWFRVATSDGKKSYAQLFEDN 179 Query: 149 VPQAPLAVTGETEKT-GTMVRFWPSLETFT--NVTEFEYEILAKRLRELSFLNSGVSIRL 205 + + V T K GT + + P + + ++ +R E++ N + + L Sbjct: 180 MSKKSNPVISNTPKEFGTTIAWIPDYARLGVKGLDQNNLLMIYRRAFEVAACNPRLKVVL 239 Query: 206 RDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQEN 265 K+ + H FV+Y + + VA+ + G Sbjct: 240 NGKQIRIDRFGH-------FVDYFHAGSAV-----------DESGEWSVAVAPSSG-TFM 280 Query: 266 IYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSV 325 + N+I GG H+ + + KK K + + ++ Sbjct: 281 HASYVNSIATHIGGPHVDYVADQIVAAIRP-----QLVKKFKTELKPAVIKNHMSLFIAA 335 Query: 326 KVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAA 385 + +P+F SQTK+++ + + + ++ L LE + + Sbjct: 336 DINNPRFDSQTKERMTTPVSQFGTSYKPSDKLIRKALEFVMAGLSKELASLRNEQDDAEF 395 Query: 386 RRAREMTRRKGALDLAGLPGKLADCQER-DPALSELYLVEGDSAGGSAKQGRNRKNQAIL 444 +A++ ++ ++ K R D + L L EGDSA R+ K + Sbjct: 396 EKAKKDISKRDYREIE----KYYPATARGDRSGCSLLLTEGDSASNPILNARDTKKIGLF 451 Query: 445 PLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGS 504 PL+GK +N A K+++++E L T G + + RY ++ TDAD DG Sbjct: 452 PLRGKFINCLNAPRTKVMNNEEFKNLCTIHGGAVPGQPLDIS--RYPQTVVATDADDDGI 509 Query: 505 HIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQIS-IALDG 563 HIR LL+T + PE V +G + + + P +V GK ++ +++ + A Sbjct: 510 HIRGLLITLYCTYWPEYVRQGRLKLLRTPYMRVWCGKVMHEFMNNAEYEEFLKTPDAKKI 569 Query: 564 ATLHTNASAPALAGEALEKLVSEYNATQKMIN 595 + E +++++ +A + Sbjct: 570 TKKKYLKGLGGNSTEDFKRILNNLDAYTTTVT 601 >UniRef50_C6LX36 DNA topoisomerase 2 n=3 Tax=Giardia intestinalis RepID=C6LX36_GIALA Length = 1492 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 132/776 (17%), Positives = 244/776 (31%), Gaps = 129/776 (16%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDT---------------------DDGTGLHHM 39 MS + I+ + G + V RP MY+G + GL + Sbjct: 1 MSQK---TKIQRVTGSEHVLLRPDMYVGSVSSAETFLWLYNPDQGLYYTKANIVPGLCKI 57 Query: 40 VFEVVDNAIDEALA-------GHCKEIIVTIHA-DNSVSVQDDGRGIPTGIHPEEGVSAA 91 E++ NA D I + ++SV++DG +E + Sbjct: 58 FDEIIVNASDNKQRDSDRSAGHKMSYIKCDVDVVSGAISVENDGVEGLLHFDEKEKMYLP 117 Query: 92 EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQ 151 + +L +DD +V+GG +G G + N S K +++Q G++ Q + + Sbjct: 118 TLAFGILMTSSNYDDTEQRVTGGRNGYGAKLTNIFSTKFTVLLQENGRVFEQTWTDNMKN 177 Query: 152 A---PLAVTGETEKTGTMVRFWPSLETFTNVTEFEYE---ILAKRLRELSFLNSGVSIRL 205 + + +K F P F + + + + +R +++ N G+ + + Sbjct: 178 TQSPRIEDVKDKKKNFIRFSFTPDYMKFGMTSGLDRDHAAYMMRRAVDVAGCNIGLKLII 237 Query: 206 RDKRDGKEDHFHYEGG--------IKAFVEY----------------------------- 228 + + Y I F E Sbjct: 238 NGEELKIANFEQYARMVYRSINPEITQFYEASRGDAAQVGANDSDSEPDLKSAATKAKPK 297 Query: 229 ----------------LNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNN 272 +++ P Y ++ L + D + F N+ Sbjct: 298 AKRTKKAVETNSLLVPIDELSKPSDWTSDYLKVISVNKFWDIGLGYTDSGELVQVSFVNS 357 Query: 273 IPQRDGGTHLAGFRAAMTRTLNAYMDKE-GYSKKAKVSATGDDAREGLIAVVSVKVPDPK 331 I DGGTH+ + LN + K K T + L+ + V +P Sbjct: 358 INTTDGGTHVDAILDLIMSQLNDILIKSFQQDAKNAKKLTRQQLKSCLVLFIRSLVVNPS 417 Query: 332 FSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRA--- 388 F SQTK L + + + L E A +V +I D A R+A Sbjct: 418 FDSQTKISLKT------DKAALLRSLGSTQAELTNLATQLVKRIQDVRPLWNALRQASYN 471 Query: 389 -------REMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGR----- 436 + + L R+ + L L EGDSA A G Sbjct: 472 QAAKLLTKTDGSKTSQLLGIPKLDDAIAAGTRESSKCTLILTEGDSAKALAVDGISSIED 531 Query: 437 NRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPD---KLRYHSI 493 +K + PL+GK++NV DK+ ++ E+ L LG G D + LRY + Sbjct: 532 GKKYYGVFPLRGKVINVRNESIDKVSNNAEITNLKKILGLKQGMDYSTQEARNTLRYGHV 591 Query: 494 IIMTDADVDGSHIRTLLLTFFYRQMPEIVE-RGHVYIAQPPLYKVKKGKQEQYIKDDEAM 552 +IMTD D DGSHI+ LL+ F + + P+ + + + + Sbjct: 592 MIMTDQDPDGSHIKGLLINLFDTYWNGLARSNKFLDFFITPIVRCTQARNMKTFYTIPEY 651 Query: 553 DQYQIS-IALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIY 611 ++ + L ++ + ++ + +K + + Sbjct: 652 KKWTQTVTDLPKWNINYYKGLGSSNTTDAKQYFQQIANNRKTL-----------IYNPES 700 Query: 612 QPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVR 667 L A + + + ++ + E L++ R Sbjct: 701 ASKLKLAFDKKLADDRKTWISGTDPDTYLDLSPTKIDITAFVDKELVLYDIESNQR 756 >UniRef50_B9U3G6 DNA topoisomerase 2 (Fragment) n=1 Tax=Pleurotus djamor RepID=B9U3G6_PLEDJ Length = 735 Score = 408 bits (1048), Expect = e-112, Method: Composition-based stats. Identities = 117/603 (19%), Positives = 214/603 (35%), Gaps = 63/603 (10%) Query: 115 LHGVGVSVVNALSQKLELV--IQREGKIHRQIYEHGVPQAPLAVTGETEK--TGTMVRFW 170 +G G + N S + + + K + Q + + Q A + + T V F Sbjct: 1 RNGFGAKLANIYSHEFTIETADKTNEKKYSQTWTKNMTQVGKAKITKNGRGEEWTKVTFK 60 Query: 171 PSLETFTNV--TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHY-EGGIKAFVE 227 P L F +L KR+ +++ V + L D+R ++ Y E + + Sbjct: 61 PDLARFGMTHIDPDTAGLLRKRVYDMAGTVKDVKVYLNDERLKVKNFKQYVEMYLDSAAA 120 Query: 228 YLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRA 287 +N E+ EV +DG F N+I GGTH+ Sbjct: 121 DAKENSGGAAQAKASIIYEQISPRWEVGFATSDG-TFQQVSFANSISTIKGGTHVNYISD 179 Query: 288 AMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKS 347 + + L A + K+ + + + V+ + +P F SQTK+ L K Sbjct: 180 QLAKNLIAAITKKN----KGAAVKPAQIKNHMWIFVNALIENPTFDSQTKETLTLPASKF 235 Query: 348 AVEQQMNELLAEY-----LLENPTDAKIVVGK--IIDAARAREAARRAREMTRRKGALDL 400 ++E + +L + +++V K IID + +++ + G+ Sbjct: 236 GSRPTLSEEFMKKGCVPIVLVVLSSYRLLVQKSSIIDQVLNWAKFKADQQIKKTDGSKRT 295 Query: 401 AGLPG----------------KLADCQ---ERDPALSELYLVEGDSAGGSAKQGR---NR 438 KL+D + L L EGDSA A G R Sbjct: 296 RYFHSHSTEFVLNSIIVTGMAKLSDANNAGTKHAEKCTLILTEGDSAKSLAVAGLAVVGR 355 Query: 439 KNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTD 498 N + PL+GK+LNV +AR D+++ ++E+ + +G ++ N LRY ++IMTD Sbjct: 356 DNFGVFPLRGKLLNVREARHDQVMKNEEIQNIKKIMGLQHNKEYSNVSSLRYGRLMIMTD 415 Query: 499 ADVDGSHIRTLLLTFFYRQMPEIVERG-HVYIAQPPLYK------------VKKGKQEQY 545 D DGSHI+ LL+ F P +++ + P+ + V KG Q + Sbjct: 416 QDHDGSHIKGLLINFLDHFYPSLLKIPEFLVEFVTPIVRVSIFHQCQIPPHVTKGSQRKN 475 Query: 546 IKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAM 605 +Q+ S + +A ++ ++M + Sbjct: 476 FFTIPEYEQWIESTPDSKKWTAKYYKGLGTSSDA---------DAREYFSKMSKHMIPFA 526 Query: 606 LKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVR 665 E +P + A + + + + + + N E LF Sbjct: 527 TMEDEERPLIDLAFSKKKADDRKDWLRQFKPGTYLDHNLEEIPYTDFINKELILFSMADN 586 Query: 666 VRT 668 +R+ Sbjct: 587 IRS 589 >UniRef50_P27570 DNA topoisomerase 2 n=15 Tax=Trypanosomatidae RepID=TOP2_CRIFA Length = 1239 Score = 399 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 130/652 (19%), Positives = 244/652 (37%), Gaps = 67/652 (10%) Query: 6 DSSSIKVLKGLDAVRKRPGMYIGDTDD----------------------GTGLHHMVFEV 43 D+S + L +D V RP MY+G + GL +V E+ Sbjct: 3 DASKYQKLTPIDHVLLRPEMYVGSIETQSIPMFVFDPAKGKMVWESMQVNQGLLKIVDEI 62 Query: 44 VDNAIDEALAG----HCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLH 99 + NA D I + I + V++DG G+P E + E++ L Sbjct: 63 LLNAADNINNSVRGARMTYISIKISDSGEIMVENDGAGLPIVKSKEHKMYIPEMVFGHLL 122 Query: 100 AGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGV---PQAPLAV 156 +++++ + G HG G + N LS K +V + G+ + + ++ Sbjct: 123 TSSNYNNDASSTTAGRHGYGAKLTNILSTKFSVVCRTAGREFHMSWTDHMRMATTPRVSN 182 Query: 157 TGETEKTGTMVRFWPSLETFTNVTE----FEYEILAKRLRELSFLNSGVSIRLRDKRDGK 212 EK T V F P F T +L KR+ +L+ + S + +RL + G Sbjct: 183 VDPKEKNVTRVTFMPDYAHFGFPTAAISLDMKRVLHKRIMDLAAMFSKIEVRLNNVPFGF 242 Query: 213 EDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNN 272 + + + + L + P F + I L + + I N Sbjct: 243 Q---TFNDYARLY--SLPGADGAMPPEPFVHTGPNGSIAFVPQLTQS---PKRIVGVVNG 294 Query: 273 IPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKF 332 + +GGTH + L++ KK + +V + PKF Sbjct: 295 VVTYNGGTHCTSAMEILETGLDSLSRS---LKKDGKVIDTNRVARHFTVLVFLIQSQPKF 351 Query: 333 SSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMT 392 SQ+K +LVS+ + + L +YL P + +++ + AA +E+ Sbjct: 352 DSQSKARLVSTV---TMPRVPRTALDQYLAAMP-----FLEAHMNSMDDQLAAELNKEIG 403 Query: 393 RRKGALDLAGLPG--KLADCQERDPAL---SELYLVEGDSAGGSAKQGRNRK---NQAIL 444 K + + KL D L + EGDSA A + + + Sbjct: 404 TGKRLSSRSLISSITKLVDATSSRSDGKNIRTLIVTEGDSAKALALNSLSSEQKKFCGVF 463 Query: 445 PLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGS 504 PL+GK+LNV ++ + +E+ L ALG +G+ +P +LRY +++MTD D DGS Sbjct: 464 PLRGKLLNVRNKNLKRLKTCKELQDLFLALGLELGKTYKSPAELRYQRLLVMTDQDADGS 523 Query: 505 HIRTLLLTFFYRQMPEIVER--GHVYIAQPPLYKVKKGKQEQY---IKDDEAMDQYQISI 559 HI+ L++ F P +++ G++ + P+ K+K + + ++Q + Sbjct: 524 HIKGLVINAFESLWPSLLQHNPGYISLFSTPIVKIKVNGKAKEVVAFHSFRDFHRWQRAN 583 Query: 560 ALDGATLHTNASAPALAGEALEKLVSEYNA--TQKMINRMERRYPKAMLKEL 609 + ++ ++ + ++ + R ++ Sbjct: 584 PNARYSAKYYKGLGTSTTAEGKEYFADMERNVMRLVVEPKDHRLLDSVFDSA 635 >UniRef50_Q2JC55 DNA topoisomerase II n=4 Tax=Actinomycetales RepID=Q2JC55_FRASC Length = 658 Score = 398 bits (1022), Expect = e-109, Method: Composition-based stats. Identities = 157/386 (40%), Positives = 224/386 (58%), Gaps = 3/386 (0%) Query: 4 SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTI 63 Y + SI + GL AVR+ P MYIG T GLHH+VFE++DNA+DE G C I V + Sbjct: 13 EYTARSIVLFSGLTAVRRNPSMYIGSTGT-EGLHHLVFELIDNAVDEFAVGTCGLIEVVL 71 Query: 64 HADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVV 123 HAD S SV DDGRGIP HP+ V A +V+MT LH+GGKF ++Y+ S GLHGVG+S V Sbjct: 72 HADGSCSVSDDGRGIPVDEHPDLRVPALQVVMTTLHSGGKFQGDTYRRSAGLHGVGLSCV 131 Query: 124 NALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFE 183 NALS+ L + + R+G ++ Q Y G P + + G +++ GT+VRF P + F + F Sbjct: 132 NALSEWLRVEVHRDGGMYTQSYGRGEPTTTVDMVGTSDRHGTLVRFRPDMMIF-DAAAFV 190 Query: 184 YEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYF 243 +LA R+ EL+FL+ G+ +RL D+R E+ F Y G+K F+ N++ +HP Sbjct: 191 TGVLAARMAELAFLHPGLVLRLVDERTDTEETFDYVEGVKGFLTQRNRDAEVVHPEPIII 250 Query: 244 STEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYS 303 + E+ + ++VALQW +G+ E + F N + GG H+ R + +N + Sbjct: 251 TAERSDLVLDVALQWTEGYAEEMSSFVNAVRTDQGGAHVDALRTGLASAINDHASMNRML 310 Query: 304 KK-AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLL 362 A T +D EGL AVVS+++ P+F QTK +L S EV V + + E +A L Sbjct: 311 DSFAGERITTNDILEGLTAVVSLRMDSPRFDGQTKRRLQSPEVGPFVRRAVAETVAATLR 370 Query: 363 ENPTDAKIVVGKIIDAARAREAARRA 388 P VV + +DA RAR AAR A Sbjct: 371 REPGLGARVVARALDATRARLAARLA 396 >UniRef50_C9DGI8 Gp60plus39 DNA topoisomerase subunit n=1 Tax=Deftia phage phiW-14 RepID=C9DGI8_9CAUD Length = 648 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 129/619 (20%), Positives = 247/619 (39%), Gaps = 71/619 (11%) Query: 6 DSSSIKVLKGLDAVRKRPGMYIGDTDDG----------------------TGLHHMVFEV 43 D S K+L D +R RPG Y+GD + + E+ Sbjct: 24 DVSKYKMLSERDHIRIRPGRYLGDINTSLVKDSWTVNEQGQVERRDVQQNPAFTKLFDEI 83 Query: 44 VDNAIDEAL---AGHCKEIIVTIHAD-NSVSVQDDGRGIPTGIH------PEEGVSAAEV 93 + N+ D +L H I V + +SV D+G GIP + ++ Sbjct: 84 ITNSADFSLTADGKHLNIIRVDYSREHGCISVYDNG-GIPVVETIVDREGQPTKLWIPDM 142 Query: 94 IMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVP--Q 151 I L +G F+D + S G +G G ++VN S + ++ Y G+ Sbjct: 143 IFGFLRSGSNFNDEADSESAGQNGEGSTLVNVFSSRFDVETCDGKNKFSITYLDGMANKT 202 Query: 152 APLAVTGETEKTGTMVRFWPSLETFTNV--TEFEYEILAKRLRELSFLNSGVSIRLRDKR 209 AP V + T + ++P ++ + L +R E++ N+ + + K Sbjct: 203 APEVVAAQGATPFTRITYFPEWSIMGMTGQEDWIEDTLRRRCLEVAACNTHIRVYYNGKP 262 Query: 210 DGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCF 269 + F L+ P S K +VAL + Y + Sbjct: 263 VNVKK-------FGDFAAMLD-------PVCVSESAPK----WDVALSLSKN-GFKHYSY 303 Query: 270 TNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPD 329 N+ GGTH+ + + A+++ K K + V+ ++ + Sbjct: 304 VNSTLTFVGGTHINHVMDKIVAEVRAHIES-----KTKQDIKPAEILNQFQLTVAARINN 358 Query: 330 PKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAR 389 P++SSQTK+ L++ V+ ++ + ++++P ++ K+++ A R+A + + Sbjct: 359 PRYSSQTKENLITPVSSYNVKYSPSKEFIKAIIDSP-----MMKKLLEWAERRKAVQDIK 413 Query: 390 EMTRR--KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLK 447 E + K ++ A + L++ EGDSA Q + + + PL+ Sbjct: 414 EAEKEIQDARKASFHHIPKYRPATNKNKAENILFVAEGDSALKP-LQAAKKPHHGLFPLR 472 Query: 448 GKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIR 507 GK NV + +E LI LG + + +N D +RY ++++ TDAD+DG+HIR Sbjct: 473 GKPDNVFDKTIRHLAKQKEFQDLIQILGLDLHQ--FNSDTIRYSALVVATDADLDGAHIR 530 Query: 508 TLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLH 567 LL F+R +++ G + P+ VK+GK+ ++ + ++ + T Sbjct: 531 GLLTVAFWRFWRPLIDEGFLRFLVTPIITVKQGKETIEFFTEQEYEDWRAANPTAKYTRK 590 Query: 568 TNASAPALAGEALEKLVSE 586 + A E +E+ +++ Sbjct: 591 YYKGLGSWATEDMERFMND 609 Score = 55.5 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 50/140 (35%), Gaps = 2/140 (1%) Query: 653 TNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGER 712 N++ + +V +D + + + R LR L+ +++G+ Sbjct: 506 FNSDTIRYSALVVATDADLDGAHIRGLLTVAFWRFWRPLIDEGFLRFLVTPIITVKQGKE 565 Query: 713 RQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIA 772 + ++ DW + + YKGLG E + DP+ M++V Sbjct: 566 TIEFFTEQEYEDWRAANPTAKYTRKYYKGLGSWATEDMERFMNDPKY--MVKVQPLTDED 623 Query: 773 ADQLFTTLMGDAVEPRRAFI 792 D L + R++++ Sbjct: 624 VDNLVLAFDPSKADARKSWL 643 >UniRef50_Q8HFR9 DNA topoisomerase 2 n=1 Tax=Bodo saltans RepID=Q8HFR9_9EUGL Length = 1247 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 151/743 (20%), Positives = 264/743 (35%), Gaps = 89/743 (11%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTDDGT----------------------GLHHMVFEVV 44 + K L +D V RP MY+G + GL + E+V Sbjct: 2 AHKYKKLSPIDHVLLRPEMYVGSVESQPIQLFLLDDQHSKVEWTTADLNHGLLKIFDEIV 61 Query: 45 DNAIDE---ALAGHCKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHA 100 NA D + I VTI ++V++DG GIP + + E+I L Sbjct: 62 LNAADNIHNSKRNPMTFINVTIDETTGQITVENDGAGIPLVKSKDHKLLIPEMIFGHLLT 121 Query: 101 GGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGET 160 +D++ +S G HG G + N +SQ+ + + K + + T Sbjct: 122 SSNYDNDPDSMSAGRHGYGAKLTNIMSQEFIVYCRTADKEVTIRWTDHMRSIDDYQVQPT 181 Query: 161 EKTG--TMVRFWPSLETFT--NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHF 216 + G T + F P F +T+ Y IL KR+ +L+ V++ Sbjct: 182 NEAGNLTKITFTPDFSVFGVTKLTKDMYRILHKRILDLAAAFPSVTVSFNGTALDVG--- 238 Query: 217 HYEGGIKAFVEYLNKNKTPIHPNIFYFST-------------EKDGIGVEVALQWNDGFQ 263 + +K F + P P + E + + Q Sbjct: 239 SFASYVKLFEAPASLFSAPTAPVVADGDAAPPPAELNKPFLFEVKHLRLAFIPQPQASVS 298 Query: 264 ENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVV 323 + N + GGTH+ + +T ++A + ++ KK + T + VV Sbjct: 299 RRTFAVVNGVVTYSGGTHVQAAQQILTDAVDALVAQK---KKEGIIVTVNTFLRYFTTVV 355 Query: 324 SVKVPDPKFSSQTKDKLVSS--EVKSAVEQQMNELLAEYLLENPTDAKI-VVGKIIDAAR 380 ++ PKF SQ+K +LVS + Q + L L + + ++ V+ K ++A Sbjct: 356 FLETTQPKFDSQSKVRLVSKVKFPRFPTGQLVEHLATMTFLSDASKGQMDVLNKELNALI 415 Query: 381 AREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSE---LYLVEGDSAGGSAKQGRN 437 RR T KL D + SE L + EGDSA A + Sbjct: 416 QVSGKRRPMISTLT-----------KLVDAASAGGSGSEIRTLIVTEGDSAKALALNSLS 464 Query: 438 ---RKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSII 494 RK + PL+GK+LNV ++ +E+ L ALG IGR + + LRY ++ Sbjct: 465 NEQRKYFGVFPLRGKLLNVRNNNLARLKKCKELCDLFAALGIEIGRRYTSTESLRYQRLL 524 Query: 495 IMTDADVDGSHIRTLLLTFFYRQMPEIVER--GHVYIAQPPLYKV-KKGKQEQYIKDDEA 551 +MTD D DG+HI+ LL++ F P +++ G + I PL + +G + + Sbjct: 525 VMTDQDADGTHIKGLLISAFESLWPSLLQHSLGFISIFSTPLIRATTRGGDVHSFYNVQE 584 Query: 552 MDQYQISIAL--DGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKEL 609 ++ A + ++ + ++ + ++ + + Sbjct: 585 FVAWKHDNARLASECFIKYYKGLGTSTTTEGKEYFKQM---EQHLMPLQVTPSDSQV--- 638 Query: 610 IYQPTLTEADLSDEQTVTRWVNALVS--ELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVR 667 L SDE + + E ++ + E F +R Sbjct: 639 -----LDNVFDSDEVQWRKEWLSAAPAVEEATLDRRQKMLTIPTFVDKELIHFANAGNLR 693 Query: 668 TH--GVDTDYPLDHEFITGGEYR 688 VD P + + R Sbjct: 694 ALPSAVDGLKPSQRKILWSCFRR 716 >UniRef50_P34534 Putative DNA topoisomerase 2, mitochondrial n=5 Tax=Caenorhabditis RepID=TOP2M_CAEEL Length = 1054 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 126/626 (20%), Positives = 239/626 (38%), Gaps = 49/626 (7%) Query: 63 IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 + +SV ++G G+P IHP EG+ ++ L +DD+ K GG +G G + Sbjct: 9 LRETARISVWNNGSGLPVEIHPTEGIYVPTLVFGNLFTSSNYDDSEIKTVGGRNGYGAKL 68 Query: 123 VNALSQKLELV--IQREGKIHRQIYEHGVPQAP----LAVTGETEKTGTMVRFWPSLETF 176 N S++ + R + RQ + + + + + ET K T V F P LE F Sbjct: 69 CNIFSKEFIVETVDTRIKRRFRQKWYDNMKKCNEAEVVEILDETVKDYTKVEFVPDLERF 128 Query: 177 --TNVTEFEYEILAKRLRELSF-LNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNK 233 +++ +++ +R+ E++ L V + L ++ G + +V+ N + Sbjct: 129 QIDKLSDDVIDLIGRRVFEVAATLPRDVDVYLNGQKCDV-------DGFEDYVKMFNDSS 181 Query: 234 TPIHPNIFYFSTEKDGIGVEVALQWNDGFQE------NIYCFTNNIPQRDGGTHLAGFRA 287 + + F V VA + N+ F E I F NNI GG+H+ Sbjct: 182 SLL------FLHPTPRWHVGVAKR-NNFFGESHVVLPKIVSFVNNINTEKGGSHVDYVMD 234 Query: 288 AMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKS 347 + + +D + S + L ++ + +P F SQTK+ L + Sbjct: 235 KIVNIIKPIVDSK--LGDPTKSVKPAVIKNNLSIFINCLIENPSFESQTKETLTTKAKNF 292 Query: 348 AVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKL 407 + E A+ E + ++ I++ + + + D+ L Sbjct: 293 GS---IFECDAKKTAE-WAEQSGLIEDIVEEVLNMKKKKLPGKRVSVSSVRDIVKLEDAE 348 Query: 408 ADCQERDPALSELYLVEGDSAGGSAKQG---RNRKNQAILPLKGKILNVEKARFDKMLSS 464 L L EGDSA A G R+ + PLKGK+LNV + + Sbjct: 349 WAGITGTAEKCTLILTEGDSAKALALAGLEVLGRETYGVFPLKGKLLNVSNLDDARASKN 408 Query: 465 QEVATLITALGCGI-GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVE 523 +E++ L+ LG + + LRY ++I+ D D DGSHI+ L++ F ++ P +V Sbjct: 409 EEISNLLRILGLKFEDSNSITRESLRYGRLLILADQDEDGSHIKGLIVNFIHKFWPSLVH 468 Query: 524 -RGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEK 582 G + + PL K KKG + + ++ + + Sbjct: 469 TDGFIQSFRTPLLKAKKGDKVRSFFSMNEYRKWADVEEGGKWKIKYYKGLGTSTSNEARE 528 Query: 583 LVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQ 642 S+ + + +Y + I + D SD W+ +E+ +++ Sbjct: 529 YFSDLDHH-----TVNFKYTGTTDDDAI--RMAFDRDKSD--ERKEWIRRSENEITNEDD 579 Query: 643 HGSQWKFDVHTNAEQNLFEPIVRVRT 668 ++ + + + F + R+ Sbjct: 580 GKTEISYQEFVDGQLMQFGMVDLKRS 605 Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 30/198 (15%), Positives = 63/198 (31%), Gaps = 10/198 (5%) Query: 610 IYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTH 669 ++ ++S+ N +S L G +++ E + ++ + Sbjct: 387 VFPLKGKLLNVSNLDDARASKNEEISNL--LRILGLKFEDSNSITRESLRYGRLLILADQ 444 Query: 670 GVDTDYP--LDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLV 727 D + L FI + + ++ ++G++ + S + W Sbjct: 445 DEDGSHIKGLIVNFIHKF-WPSLVHTDGFIQSFRTPLLKAKKGDKVRSFFSMNEYRKWAD 503 Query: 728 KESRRGLSIQRYKGLGEMNPEQLWETT--MDPESRRMLRVTVKDAIAADQLFTTLMGDAV 785 E I+ YKGLG + E +D + D A F D Sbjct: 504 VEEGGKWKIKYYKGLGTSTSNEAREYFSDLDHHTVNFKYTGTTDDDAIRMAFDR---DKS 560 Query: 786 EPRRAFIEENALKAANID 803 + R+ +I + + N D Sbjct: 561 DERKEWIRRSENEITNED 578 >UniRef50_D2RAT5 DNA gyrase, B subunit, C-terminal domain protein n=10 Tax=Bifidobacteriaceae RepID=D2RAT5_GARVA Length = 792 Score = 378 bits (970), Expect = e-103, Method: Composition-based stats. Identities = 142/468 (30%), Positives = 240/468 (51%), Gaps = 42/468 (8%) Query: 195 SFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIG--- 251 S N+ + +++K + F + GG+K FV++L+K + +I+ S E + Sbjct: 316 SVANAQSANSMQNKHHPRVVEFLHNGGVKDFVDFLSKGEAV--SDIWRISGEDTYVEETQ 373 Query: 252 ------------------VEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTL 293 V++A++W +G+ I F N + GG H+ GF +T+ + Sbjct: 374 AVDSAGDLHAQQVTRKCGVDIAMRWVNGYDSTIISFVNVVETPGGGMHVDGFLQGLTKQI 433 Query: 294 NAYMDKEG-----YSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSA 348 ++ K + DD GL+AVV+V++ +P+F QTKD L +++VK Sbjct: 434 RKAVEDNARKLKVNLKDSNTKIERDDITAGLVAVVTVRIAEPQFQGQTKDVLGTAQVKPI 493 Query: 349 VEQQMNELLAEYLLENPTDAKI----VVGKIIDAARAREAARRAREMTRRKGALDLAGLP 404 V + + E + + K V+ KI+ AR AR+ +E+TRRK AL+ A +P Sbjct: 494 VTKMTDAQFGEMITGSKRGFKEQSSRVLEKIVSEMHARIQARKTKEVTRRKNALESASMP 553 Query: 405 GKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 464 KL+DCQ + ++EL++VEGDSA G+AK RN QA+LP++GKILNV+KA +MLS+ Sbjct: 554 PKLSDCQPGNDDVAELFIVEGDSALGTAKAARNSAFQALLPIRGKILNVQKASLAQMLSN 613 Query: 465 QEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVER 524 +E A +I +G G G ++ + RY+ I++MTDADVDG+HIR LLLT FYR M ++E Sbjct: 614 KECAAIIQVVGAGSGA-SFDISQARYNKIVMMTDADVDGAHIRILLLTLFYRYMRPLIEH 672 Query: 525 GHVYIAQPPLYKV----KKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEAL 580 GHVY A PPL+++ K+ + Y D+ + + G +++ GE Sbjct: 673 GHVYAAVPPLHRIALAGKRKGEYIYTYSDDELAGKLDDLQAKGIDFNSDIQRYKGLGEMD 732 Query: 581 EKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTR 628 +++ + R + +++ + + + D+ + Sbjct: 733 ADQLADTTMDPRT-----RMLRRIRMEDAQQASEVFDLLMGDDVPPRK 775 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 108/264 (40%), Positives = 148/264 (56%), Gaps = 35/264 (13%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 YD+ S+ VL+GLDAVRKRPGMYIG TD GL H ++E++DNA+DEALAG C IIV Sbjct: 5 KEQYDADSLTVLEGLDAVRKRPGMYIGTTD-SQGLMHCLWEIIDNAVDEALAGACDHIIV 63 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 T+H D S+ V D+GRGIP + P+ ++ EV++T LHAG KF + SY +GGLHGVG S Sbjct: 64 TLHDDGSIEVADNGRGIPVDVEPKTKLTGVEVVLTKLHAGAKFGNASYNAAGGLHGVGSS 123 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVP------------------------QAPLAVT 157 VVNALS +L++ + R+GK H + G P L + Sbjct: 124 VVNALSLRLDVEVDRDGKTHHMAFHQGHPGVYSDADPEHPSPASPFKRTRKNKSTELEII 183 Query: 158 GE--TEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDH 215 G + TGT VR+W E F + F YE L R+R+ SFL G+ I + D+ + Sbjct: 184 GTVSPKTTGTRVRYWADPEIFNSTAHFSYEQLIARVRQTSFLVPGLKITVIDEHVPE--- 240 Query: 216 FHYEGGIKAFVEYLNKNKTPIHPN 239 G A +E ++ K + + Sbjct: 241 -----GESANIEEIDSTKDDVAED 259 Score = 155 bits (391), Expect = 7e-36, Method: Composition-based stats. Identities = 47/181 (25%), Positives = 72/181 (39%), Gaps = 8/181 (4%) Query: 629 WVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYR 688 L ++ + Q + IV + VD + Y Sbjct: 607 LAQMLSNKECAAIIQVVGAGSGASFDISQARYNKIVMMTDADVDGAHIRILLLTLFYRYM 666 Query: 689 RICTLGEKLRGLLEEDAFI----ERGERRQPVASFEQALDWLVKESRRGLS----IQRYK 740 R + + I +R S ++ L +G+ IQRYK Sbjct: 667 RPLIEHGHVYAAVPPLHRIALAGKRKGEYIYTYSDDELAGKLDDLQAKGIDFNSDIQRYK 726 Query: 741 GLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAA 800 GLGEM+ +QL +TTMDP +R + R+ ++DA A ++F LMGD V PR+ FI +NA Sbjct: 727 GLGEMDADQLADTTMDPRTRMLRRIRMEDAQQASEVFDLLMGDDVPPRKQFIVDNADDFD 786 Query: 801 N 801 Sbjct: 787 R 787 >UniRef50_A6N697 DNA gyrase subunit B (Fragment) n=2 Tax=uncultured bacterium RepID=A6N697_9BACT Length = 440 Score = 372 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 165/445 (37%), Positives = 239/445 (53%), Gaps = 31/445 (6%) Query: 92 EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRE-GKIHRQIYEHGVP 150 EVIMTVLHAGGKFD Y SGGLHGVGVSVV AL+ +LE + RE YE G Sbjct: 1 EVIMTVLHAGGKFDGEVYDYSGGLHGVGVSVVCALASRLEAQVWRETEGSFTIAYEQGKL 60 Query: 151 QAPLAV--TGETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDK 208 PL + GT ++FWP E F + +++ + +R R ++L G+ + + D Sbjct: 61 VQPLRKRPGSKAHPHGTRIKFWPDPEIFGDAV-VDFDAVLERCRSKAYLIPGLRVDVIDH 119 Query: 209 RD--GKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTE-----------KDGIG---- 251 R + + G+ + +L N P+H I E DGI Sbjct: 120 RLDPPVKHTYTSRNGLVDLLGHLANN--PLHKPII-IEGEGTYEETVQVLGDDGIRAQNM 176 Query: 252 -----VEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKA 306 +E+AL W G++ N + GGTHL G A++R + + K Sbjct: 177 ERTGRLELALVWTGGYETQFQLAVNQVTTPRGGTHLTGLNQALSRVVVKAAEGSRVKKAK 236 Query: 307 KVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPT 366 S DD EGL V+ +++P+P+F+ Q K++L + + V Q + LA++ P Sbjct: 237 DPSPNKDDVMEGLCLVMHLQIPEPQFNGQAKEELGTPQAHQLVYQIVARELAKWFETAPR 296 Query: 367 -DAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 425 ++V+ K++ AARAR+AARR+R+M R+K + LP KL+D P SEL +VEG Sbjct: 297 THVRVVLEKVMAAARARDAARRSRDMARKKDRNQVLALPAKLSDSYRHYPEESELLIVEG 356 Query: 426 DSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNP 485 DSA G AK GR+++ QA+LP++GKILN +A + S+ EV + +ALG G +P Sbjct: 357 DSAAGPAKAGRDQRFQAVLPIRGKILNAARASAHNLASNAEVTAIFSALGLQPGPK-CDP 415 Query: 486 DKLRYHSIIIMTDADVDGSHIRTLL 510 ++ RY ++IMTDADVDGSHIRTLL Sbjct: 416 EQRRYTRVVIMTDADVDGSHIRTLL 440 >UniRef50_D2QB32 GyrB2 DNA gyrase subunit B n=8 Tax=Bifidobacterium RepID=D2QB32_9BIFI Length = 778 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 136/453 (30%), Positives = 229/453 (50%), Gaps = 42/453 (9%) Query: 210 DGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKD--------------------- 248 + + F + GG+K FV++L+K + +I+ + + Sbjct: 317 HARVEEFCHNGGVKDFVDFLSKGEAV--SDIWRITGDDTYVEETQAVGEGGELHAQKVTR 374 Query: 249 GIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEG-----YS 303 V++A++W DG+ + F N + GG H+ GF +T+ + ++ Sbjct: 375 DCAVDIAMRWTDGYDTTMRSFVNVVETPGGGMHVDGFLQGITKQIRKAVEDNARKLKVNL 434 Query: 304 KKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLE 363 K + + DD GL+AVV+V++ +P+F QTKD L +++VK V + + E + Sbjct: 435 KDSNMKVERDDIMAGLVAVVTVRIAEPQFQGQTKDVLGTAQVKPIVTRMTDRQFGEMITG 494 Query: 364 NPTDAKI----VVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSE 419 + K V+ KI+ AR AR+ +E+TRRK AL+ A +P KL+DCQ + ++E Sbjct: 495 SKRGYKEQSGRVLEKIVGEMHARIQARKTKEVTRRKNALESASMPPKLSDCQPGNDDVAE 554 Query: 420 LYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIG 479 L++VEGDSA G+AK RN QA+LP++GKILNV+KA +MLS++E A +I +G G G Sbjct: 555 LFIVEGDSALGTAKAARNSGFQALLPIRGKILNVQKASLAQMLSNKECAAIIQVVGAGSG 614 Query: 480 RDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKV-- 537 ++ ++ RY+ II+MTDADVDG+HIR LLLT FYR M ++E GHVY A PPL+++ Sbjct: 615 A-SFDIEQARYNKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGHVYAAVPPLHRIAL 673 Query: 538 --KKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMIN 595 + Y D+ + + + + GE +++ + Sbjct: 674 TGAHKGEYIYTYSDDELAGKLSELERKHIAYNDDIQRYKGLGEMDADQLADTTMDPRT-- 731 Query: 596 RMERRYPKAMLKELIYQPTLTEADLSDEQTVTR 628 R + +++ + + D+ + Sbjct: 732 ---RMLRRIRMEDAEQANEIFSLLMGDDVPPRK 761 Score = 240 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 103/237 (43%), Positives = 144/237 (60%), Gaps = 27/237 (11%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 ++Y + S+ VL+GLDAVRKRPGMYIG TD GL H ++E++DN++DEALAG C I+V Sbjct: 3 KDNYGAGSLTVLEGLDAVRKRPGMYIGTTD-SQGLMHCLWEIIDNSVDEALAGACNHIVV 61 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 T+H+D SV V D+GRGIP + P+ ++ EV++T LHAG KF ++SY SGGLHGVG S Sbjct: 62 TLHSDGSVEVADNGRGIPVDVEPKTKLTGVEVVLTKLHAGAKFGNSSYGASGGLHGVGSS 121 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQ------------------------APLAVT 157 VVNALS +L++ + R+GK H + G P L + Sbjct: 122 VVNALSSRLDVEVDRDGKTHHMSFHQGHPGVYADADPEHPSPDSPFKRTRKNRPTELEII 181 Query: 158 GE--TEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK 212 G+ + TGT +R+W E F + EF YE L R+R+ SFL G+ I + D+ + Sbjct: 182 GKVSPKTTGTRIRYWADPEIFNDTAEFSYEQLIDRVRQTSFLVPGLKITVIDENIPE 238 Score = 162 bits (409), Expect = 6e-38, Method: Composition-based stats. Identities = 60/279 (21%), Positives = 105/279 (37%), Gaps = 45/279 (16%) Query: 568 TNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVT 627 + +G LEK+V E +A + E K L+ P L++ ++ Sbjct: 495 SKRGYKEQSGRVLEKIVGEMHARIQARKTKEVTRRKNALESASMPPKLSDCQPGNDDVAE 554 Query: 628 RWV--------------------------------NALVSELNDKEQHGSQWKFD----- 650 ++ A ++++ ++ + + Sbjct: 555 LFIVEGDSALGTAKAARNSGFQALLPIRGKILNVQKASLAQMLSNKECAAIIQVVGAGSG 614 Query: 651 VHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIE-- 708 + EQ + I+ + VD + Y R + + I Sbjct: 615 ASFDIEQARYNKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGHVYAAVPPLHRIALT 674 Query: 709 --RGERRQPVASFEQALDWLVKESRRGL----SIQRYKGLGEMNPEQLWETTMDPESRRM 762 S ++ L + R+ + IQRYKGLGEM+ +QL +TTMDP +R + Sbjct: 675 GAHKGEYIYTYSDDELAGKLSELERKHIAYNDDIQRYKGLGEMDADQLADTTMDPRTRML 734 Query: 763 LRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAAN 801 R+ ++DA A+++F+ LMGD V PR+AFI ENA Sbjct: 735 RRIRMEDAEQANEIFSLLMGDDVPPRKAFIVENADDFDR 773 >UniRef50_UPI0001924D0A PREDICTED: similar to DNA topoisomerase 2 n=1 Tax=Hydra magnipapillata RepID=UPI0001924D0A Length = 1315 Score = 368 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 127/693 (18%), Positives = 249/693 (35%), Gaps = 90/693 (12%) Query: 6 DSSSIKVLKGLDAVRKRPGMYIGDT----------------------DDGTGLHHMVFEV 43 + + P YIG T + G E+ Sbjct: 44 VEDVYDGMTLHQHILSAPDTYIGTTTVDEVRMFIFDEDNNKIIEDVINYVAGFFKTFDEI 103 Query: 44 VDNAIDEALAGH-CKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAG 101 + NA D + CK I +TI D ++V +DG GIP IH + + E+I L Sbjct: 104 LVNARDHTVRDKTCKNIQITIDRDTGRITVWNDGNGIPVSIHKKYNIYVPEMIFGNLLTS 163 Query: 102 GKFDDNSYKVSGGLHGVGVSVVNALSQKLE----------------LVIQREGKI-HRQI 144 + V G G + N S++ E + + K+ +RQ Sbjct: 164 QNYGKKGKTVGGKNG-YGAKLCNIYSKEFEIHTIGVDKIKEVDGKIVPDENAKKVEYRQT 222 Query: 145 YEHGVPQAPL----AVTGETEKTGTMVRFWPSLETFTN---VTEFEYEILAKRLRELSFL 197 +++ + ++ K T + + P E + +T Y +L KR +++ Sbjct: 223 FKNNMYDVGKPDINKKISQSSKQFTQISYIPDYEKYGMNGRLTNDMYSLLVKRCYDIAAC 282 Query: 198 NSG-VSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVAL 256 V+I + +E I+ + K K + EK E+ + Sbjct: 283 TPSTVNISVNGCNIKCR---KFEDYIRLYYSDDPKEKPK-------ITYEKVNDRWEIGI 332 Query: 257 QWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAR 316 +N + F N I GGTH++ + + A++ K+ + + Sbjct: 333 GFNKNVGDRYISFVNGISTFQGGTHVSHVVNNVVAKVTAFIKKKKEH--KDLKIIPATIK 390 Query: 317 EGLIAVVSVKVPDPKFSSQTKDKLVSSEVK--------SAVEQQMNELLAEYLLENPTDA 368 + L ++ V DP F+SQTK+ + S V+ ++++ E L N Sbjct: 391 QYLTFFINCVVEDPGFNSQTKEYMNSKVADWCTCGNMCKDVKCELSDEFIEKLCGNG--- 447 Query: 369 KIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSA 428 ++ ++++ ++ +E + ++ G L + L L + A + ++ EGDSA Sbjct: 448 --LMTEVVNMSKFKEMRDLDKTDGKKVGKLKIPKLKDALW-AGGKKSAKTSIFFTEGDSA 504 Query: 429 GGSAKQGR---NRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNP 485 G ++ + PL+GK+LNV A ++ S+ E + LG G + Sbjct: 505 QSFVIDGISVIGQERYGVFPLRGKLLNVRNATAKQIKSNTEFLNIKKILGLKQGVKYKDV 564 Query: 486 DKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVE-RGHVYIAQPPLYKVKKGK--- 541 KLRY S+II+TD D DGSHI+ L++ PE+++ G + P+ K K Sbjct: 565 SKLRYGSVIIITDQDPDGSHIKGLIINMLEYFWPELLQIDGFIKAYNTPIVKAWKKTDKK 624 Query: 542 --QEQYIKDDEAMDQYQI-----SIALDGATLHTNASAPALAGEALEKLVSEYNATQKMI 594 + ++++ I +G + + ++ +++ Sbjct: 625 KASVKQFYSMSEFEKWRDVEMKGDIKGNGWEYKYYKGLGTSSNKESKESFKDFDNNLTTF 684 Query: 595 NRMERRYPKAMLKELIYQPTLTEADLSDEQTVT 627 + + + + +++ Sbjct: 685 LWEHEDDNSVKTDDDVSLDMDKSLNKKNGKSIK 717 >UniRef50_UPI0001976865 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Bacillus subtilis subsp. subtilis str. NCIB 3610 RepID=UPI0001976865 Length = 638 Score = 367 bits (941), Expect = 1e-99, Method: Composition-based stats. Identities = 160/646 (24%), Positives = 278/646 (43%), Gaps = 37/646 (5%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 M+ + + IK L + R++ ++ G D+ +H + E++ N DE + + I Sbjct: 1 MTTT-NQDKIKRLDDREKSREKIAIWYGSADN---YYHGLKEILANGTDEVINNFDEGI- 55 Query: 61 VTI---HADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHG 117 VT+ +V V D GRGIP +GV E++ L A K++ S + + G +G Sbjct: 56 VTLELFDDLQTVRVTDTGRGIPID-GETDGVKNYELLFRTLFASTKYE-TSEQTTTGTNG 113 Query: 118 VGVSVVNALSQKLELVIQREGKIHRQIYEHG--VPQAPLAVTGETEKTGTMVRFWPSLET 175 VG +V+N S + +G H +E+G + Q ++ GT++ F E Sbjct: 114 VGATVLNFTSLFFHIESYYDGYKHALKFENGGELVQDLTKEKISEDRHGTVITFKLDPEV 173 Query: 176 FTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTP 235 + VT ++ +++ + +R + I+L +G+E+ FHYE + F E + T Sbjct: 174 YPVVT-YDKDVVREIVRRFA--IGSHKIKLIFIHNGEEETFHYESVEEYFEELIGSTTTS 230 Query: 236 IHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNA 295 E+DG ++ L ++ + N DGG+ G + N Sbjct: 231 PVITAPESLYEEDGERTQIKLTFSTTTDPIQESYLNLTYLSDGGSFNDGVITGIKTFCNK 290 Query: 296 YMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNE 355 Y + K S T +D + V+ +F +QTK + ++ + Sbjct: 291 YARENKLFPKGINSFTTEDIESSVSFVLVALSNKVEFKNQTKLSTDKKLYRKLAQRHTTQ 350 Query: 356 LLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGK---LADCQE 412 LL + +EN K V +++ + +++A++ ++K + + G+ K L DC + Sbjct: 351 LLEVFQIENEKGFKKFVNHLLEVQKHNTQSQKAKQQLKKKLSEKVDGIGNKVANLVDC-K 409 Query: 413 RDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 472 + SE+++ EG SA GS R+ QA PL+GKILN KA + + +Q + LI Sbjct: 410 KHGKDSEIFIAEGQSALGSIVLARDAVYQAAYPLRGKILNCLKADYTTIFKNQIITDLIK 469 Query: 473 ALGCGI-------GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERG 525 LGCGI D +N + LRY III TD D DG+ I L++T YR MP+++E G Sbjct: 470 VLGCGIQTDKKNKDLDTFNINNLRYGKIIIATDQDSDGAQIACLIITMIYRLMPKLIEEG 529 Query: 526 HVYIAQPPLYKVK-KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLV 584 +VYIAQ PLY++K + Y + DQ ++ + Sbjct: 530 YVYIAQTPLYEIKLEDDSMIYFYSESEKDQKINTLKGKYTIARCKGLGE----------L 579 Query: 585 SEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWV 630 + +N R K +++ E + R Sbjct: 580 DAVTMAETAMNEETRNLIKVTVEDAENMIESLETWMGSSVDNRREY 625 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 44/191 (23%), Positives = 75/191 (39%), Gaps = 6/191 (3%) Query: 613 PTLTEADLSDEQTVTR--WVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHG 670 + +D T+ + + L+ L Q + K N + I+ Sbjct: 445 GKILNCLKADYTTIFKNQIITDLIKVLGCGIQTDKKNKDLDTFNINNLRYGKIIIATDQD 504 Query: 671 VDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAF--IERGERRQPVASFEQALDWLVK 728 D I YR + L E+ + + I+ + E D + Sbjct: 505 SDGAQIAC--LIITMIYRLMPKLIEEGYVYIAQTPLYEIKLEDDSMIYFYSESEKDQKIN 562 Query: 729 ESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPR 788 + +I R KGLGE++ + ET M+ E+R +++VTV+DA + T MG +V+ R Sbjct: 563 TLKGKYTIARCKGLGELDAVTMAETAMNEETRNLIKVTVEDAENMIESLETWMGSSVDNR 622 Query: 789 RAFIEENALKA 799 R +I EN K Sbjct: 623 REYISENLYKY 633 >UniRef50_A7XYG8 GyrB (Fragment) n=6 Tax=Chlamydia trachomatis RepID=A7XYG8_CHLTR Length = 393 Score = 365 bits (936), Expect = 4e-99, Method: Composition-based stats. Identities = 171/418 (40%), Positives = 241/418 (57%), Gaps = 37/418 (8%) Query: 399 DLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARF 458 D A LPGKL DC E+DP E+Y+VEGDSAGGSAKQGR+R+ QAILP++GKILNVEKAR Sbjct: 1 DSARLPGKLIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARL 60 Query: 459 DKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQM 518 K+ +QE+ ++I ALGCGIG+D +N KLRY IIIMTDADVDGSHIRTLLLTFFYR M Sbjct: 61 QKVFQNQEIGSIIAALGCGIGKDNFNLSKLRYKRIIIMTDADVDGSHIRTLLLTFFYRHM 120 Query: 519 PEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGE 578 ++E VYIAQPPLY+V K K +YI ++ MD Y +++ + + + + L GE Sbjct: 121 SALIENECVYIAQPPLYRVSKKKDFRYILSEKEMDGYLLNLGTKESQIVFDDTLRDLRGE 180 Query: 579 ALEKLVSEYNATQKMINRMERRYP-----KAMLKELIYQPTLTEADLSDEQTVTRWVNAL 633 ALE V+ + I +E++ M ++ Y + + + + Sbjct: 181 ALETFVNLILEVESFIVSLEKKAIPFSEFLDMFRDGAYPLYYYPPESGKQGGSYLYSHEE 240 Query: 634 VS-ELNDKEQHGSQ----WKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYR 688 + E+ S+ +K V +++L + +R + +P E Sbjct: 241 KEAAIAANEESASRILELYKGSVLEELQRDLGDYGYDIRNY----LHPKGSGITVSTEDP 296 Query: 689 RICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPE 748 +I + ++ +D+L R+G+ IQRYKGLGEMN + Sbjct: 297 KISPYV---------------------CYTLKEVIDYLKGLGRKGIEIQRYKGLGEMNAD 335 Query: 749 QLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAA--NIDI 804 QLW+TTM+PE R ++RV++KDA+ AD +FT LMG+ V PRR FI+ +AL N+DI Sbjct: 336 QLWDTTMNPEQRTLVRVSLKDAVEADHIFTMLMGEEVPPRREFIKSHALSIRMNNLDI 393 >UniRef50_Q6UGM9 DNA gyrase B subunit (Fragment) n=1 Tax=Fusobacterium necrophorum subsp. necrophorum RepID=Q6UGM9_9FUSO Length = 403 Score = 364 bits (935), Expect = 6e-99, Method: Composition-based stats. Identities = 167/405 (41%), Positives = 231/405 (57%), Gaps = 8/405 (1%) Query: 105 DDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGE---TE 161 ++++YKVSGGLHGVG+SVVNALS+ E+ ++REG ++ Q Y G P + + E Sbjct: 1 ENDNYKVSGGLHGVGISVVNALSEWTEVKVKREGNVYYQKYLRGKPVEDVKIISTLEVGE 60 Query: 162 KTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRD--GKEDHFHYE 219 TGT+V F P +E F FEYE+L RL+EL++LN G+ I L D R+ GK++ F E Sbjct: 61 TTGTIVTFKPDIEIF-ETVIFEYEVLQHRLKELAYLNRGLEINLLDCRNEIGKKESFQSE 119 Query: 220 GGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGG 279 GGI F++ + + + + + + +GV++A + G E IY F NNI G Sbjct: 120 GGISDFLKEVTRENQTLLSKQIHIEGQAEQVGVDIAFTYTTGQSEVIYFFCNNIQYYRGR 179 Query: 280 THLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDARE-GLIAVVSVKVPDPKFSSQTKD 338 + L ++K G + T L + K + QTK Sbjct: 180 LSCDWISNLFNKGLLMILEKAGIFEGKGWKITRRRTFGKELGLLFRSKFHNRNLEGQTKT 239 Query: 339 KLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGAL 398 KL +SEV V ++ L +L +NP D K+++ KI+ + +AREAA+RARE RK L Sbjct: 240 KLGNSEVNGIVNTVLSTDLKIFLEDNPNDTKLIIEKILSSKKAREAAQRAREAVLRKSVL 299 Query: 399 DLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARF 458 ++ LPGKLADC + P E++LVEGDSAGGSAKQGR+R QAILPLKGKILNVEKA Sbjct: 300 EVGSLPGKLADCSSKKPEECEIFLVEGDSAGGSAKQGRDRYFQAILPLKGKILNVEKAGL 359 Query: 459 DKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDG 503 K L S E+ ++TA G IG + II+MTDADVDG Sbjct: 360 HKALESDEIRAMVTAFGTNIGEESLIGKIEI-GKIILMTDADVDG 403 >UniRef50_B6XTR9 Putative uncharacterized protein n=2 Tax=Bifidobacterium RepID=B6XTR9_9BIFI Length = 783 Score = 364 bits (935), Expect = 6e-99, Method: Composition-based stats. Identities = 135/453 (29%), Positives = 233/453 (51%), Gaps = 42/453 (9%) Query: 210 DGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIG------------------ 251 + + F + GG++ FV+YL+K + +I+ + E + Sbjct: 322 HARIEEFCHTGGVRDFVDYLSKGEAV--SDIWRVTGEDTYVEETQAVGDGGELHAQKVTR 379 Query: 252 ---VEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEG-----YS 303 V++A++W +G+ + F N + GGTH+ G+ MT+ + ++ Sbjct: 380 KCAVDIAMRWTNGYDTTMRSFVNVVETPGGGTHVDGYLLGMTKQIRKAIEDNARKLKVNL 439 Query: 304 KKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLE 363 K + + DD GL+AV++V++ +P+F QTKD L +++VK V + ++ E + Sbjct: 440 KDSNMKVERDDILSGLVAVITVRIAEPQFQGQTKDVLGTAQVKPIVSKMTDKQFGEMITG 499 Query: 364 NPTDAKI----VVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSE 419 + K V+ KI+ AR AR+ +E+TRRK AL+ A +P KL+DCQ + ++E Sbjct: 500 SKRGYKEQSGRVLEKIVGEMHARIQARKTKEVTRRKNALESASMPPKLSDCQPGNDDVAE 559 Query: 420 LYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIG 479 L++VEGDSA G+AK RN QA+LP++GKILNV+KA +MLS++E A +I +G G G Sbjct: 560 LFIVEGDSALGTAKAARNSGFQALLPIRGKILNVQKASLSQMLSNKECAAIIQVVGAGSG 619 Query: 480 RDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKV-- 537 ++ ++ RY+ +I+MTDADVDG+HIR LLLT FYR M ++E GHVY A PPL+++ Sbjct: 620 A-SFDIEQARYNKVIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGHVYAAVPPLHRIAL 678 Query: 538 --KKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMIN 595 + + Y D+ + + + + GE +++ + Sbjct: 679 TGARKGEYIYTYSDDELAGKLAELDKKRIGYNEDIQRYKGLGEMDADQLADTTMDPRT-- 736 Query: 596 RMERRYPKAMLKELIYQPTLTEADLSDEQTVTR 628 R + +++ + + D+ + Sbjct: 737 ---RMLRRIRMEDAEQASRIFSLLMGDDVPPRK 766 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 105/237 (44%), Positives = 144/237 (60%), Gaps = 27/237 (11%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 ++Y + S+ VL+GLDAVRKRPGMYIG TD GL H ++E++DN++DEALAG C IIV Sbjct: 8 KDNYGAGSLTVLEGLDAVRKRPGMYIGTTD-SQGLMHCLWEIIDNSVDEALAGVCNHIIV 66 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 T+H+D SV V D+GRGIP I P+ ++ EV++T LHAG KF ++SY SGGLHGVG S Sbjct: 67 TLHSDGSVEVADNGRGIPVDIEPKTKLTGVEVVLTKLHAGAKFGNSSYGASGGLHGVGSS 126 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQ------------------------APLAVT 157 VVNALS +L++ + R+GK H + G P L + Sbjct: 127 VVNALSSRLDVEVDRDGKTHHMSFHQGHPGVYTDVDSEHPSPDAPFKRTRKNRPTELEII 186 Query: 158 GE--TEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK 212 G+ + TGT +R+W E F + EF YE L R+R+ SFL G+ I + D+ + Sbjct: 187 GKVSPKTTGTRIRYWADPEIFNDTAEFSYEQLIDRVRQTSFLVPGLKITVIDENIPE 243 Score = 160 bits (404), Expect = 3e-37, Method: Composition-based stats. Identities = 60/279 (21%), Positives = 105/279 (37%), Gaps = 45/279 (16%) Query: 568 TNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVT 627 + +G LEK+V E +A + E K L+ P L++ ++ Sbjct: 500 SKRGYKEQSGRVLEKIVGEMHARIQARKTKEVTRRKNALESASMPPKLSDCQPGNDDVAE 559 Query: 628 RWV--------------------------------NALVSELNDKEQHGSQWKFD----- 650 ++ A +S++ ++ + + Sbjct: 560 LFIVEGDSALGTAKAARNSGFQALLPIRGKILNVQKASLSQMLSNKECAAIIQVVGAGSG 619 Query: 651 VHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIE-- 708 + EQ + ++ + VD + Y R + + I Sbjct: 620 ASFDIEQARYNKVIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGHVYAAVPPLHRIALT 679 Query: 709 --RGERRQPVASFEQALDWLVKESRRGL----SIQRYKGLGEMNPEQLWETTMDPESRRM 762 R S ++ L + ++ + IQRYKGLGEM+ +QL +TTMDP +R + Sbjct: 680 GARKGEYIYTYSDDELAGKLAELDKKRIGYNEDIQRYKGLGEMDADQLADTTMDPRTRML 739 Query: 763 LRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAAN 801 R+ ++DA A ++F+ LMGD V PR+AFI ENA Sbjct: 740 RRIRMEDAEQASRIFSLLMGDDVPPRKAFIVENADDFDR 778 >UniRef50_Q9QSK1 DNA topoisomerase 2 n=1 Tax=Invertebrate iridescent virus 6 RepID=TOP2_IIV6 Length = 1132 Score = 361 bits (927), Expect = 6e-98, Method: Composition-based stats. Identities = 152/806 (18%), Positives = 270/806 (33%), Gaps = 114/806 (14%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDT----------------------DDGTGLHH 38 M+ S L +D V RP + IG T L Sbjct: 1 MATSNHKKQYTTLSDIDHVLLRPEVIIGSTVPMEQTEYVVDENFSEILEKQVFVSEALIR 60 Query: 39 MVFEVVDNAIDEALA-----GHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGV----- 88 + EV+ NA+D CK I + I D + + +DG+ I +G+ Sbjct: 61 IFVEVLANAVDNIHRSKGSSTPCKSIKIKIEDDGTTMIHNDGQVIKISKEENDGIEINGK 120 Query: 89 ----SAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLEL--VIQREGKIHR 142 E++ L + +DD + + G +G+GV N LS+ ++ V K Sbjct: 121 KCSVYNHELVFGHLRSSSNYDDTVVRQTSGKNGLGVKCTNILSKSFKVIGVDPENKKKFV 180 Query: 143 QIYEHGVPQA--PLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNS- 199 Q + + + + P T ++ T V + P E N + I K + +++ L S Sbjct: 181 QEWTNNMKETSGPKVTTSSSKTGYTEVIYCPDFERLGNFSSDIIGIFRKHVLDVAMLASS 240 Query: 200 -GVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQW 258 GVS+ DK+ + + + K + E V +A Sbjct: 241 EGVSVYFNDKKLPIKK-------FSDYTKLFKLEKES-----ISITEEDGSSEVTIAFVE 288 Query: 259 NDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREG 318 DG ++ I F N + + GG H+ G+ L + ++K + K + + D Sbjct: 289 RDGKKKPI-SFVNGLFTKHGGQHVDGWTKPFFANLLSVLNKPSKTYK-DLKLSLKDVTPY 346 Query: 319 LIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDA 378 V V P+F Q K+ L S +K + ++ + ++ T + + + Sbjct: 347 FRFFVKSTVDKPQFDCQNKNMLKSPCLKYTIPDKIITKVCKW-----TSVQELKQSSFEK 401 Query: 379 ARAREAARRAREMTRRKGALDLA-GLPGKLADCQERDPALSELYLVEGDSAGGSAKQG-- 435 + + + +K ++ L + EG SA A G Sbjct: 402 LLKGKDNNIIKTLNDKKRRPKVSVKEYDPANKAGTTLSEKCTLIVCEGLSAKTYAVAGIS 461 Query: 436 -----------RNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDE-- 482 + R ILPL+GK LNV A DKM+ + V L+ A+G G D Sbjct: 462 TGISFTGTDTKKGRDWFGILPLRGKFLNVRNANNDKMIKNTVVTDLVNAMGLTFGMDYST 521 Query: 483 -YNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQM--------PEIVERGHVYIAQPP 533 + L Y SIII+ D D DG HI L+L FF+ P + + + + P Sbjct: 522 QKSRKSLNYGSIIIIPDPDEDGIHIEGLVLNFFHHHFSSLFNPVVPNLKDFPFISSMKIP 581 Query: 534 LYKVK----KGKQEQYIKDDEAMDQYQISIAL-DGATLHTNASAPALAGEALEKLVSE-- 586 + KV KG++E EA +++ + E + K+ + Sbjct: 582 IIKVIEKPLKGRREIEFFTHEAFHKFKNENKWHKNHEIKYFKGLGTTKHEDVPKIFGKKM 641 Query: 587 --YNATQKMINRMERRYPKAMLKELIYQPTLTEADLS-------------------DEQT 625 +N ME+ + E + +E+ Sbjct: 642 VVFNIDDNAHENMEKAFKDEEADERKEWLKQYNPNARTFDLDSPNKILQLNISTFINEEL 701 Query: 626 VTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGG 685 + + L + + V +Q + ++V G D++ Sbjct: 702 IKFSIEDCKRSLPHLIDGLKESQRKVIFGLKQWNGKNNIKVAQLGAFVAQKTDYKHGEQN 761 Query: 686 EYRRICTLGEKLRGLLEEDAFIERGE 711 + I + + G E G+ Sbjct: 762 LFDTIIKMAQTFVGANNIPLLEEDGQ 787 >UniRef50_A3Q8K7 DNA topoisomerase (ATP-hydrolyzing) n=6 Tax=Mycobacterium RepID=A3Q8K7_MYCSJ Length = 677 Score = 359 bits (921), Expect = 3e-97, Method: Composition-based stats. Identities = 159/683 (23%), Positives = 263/683 (38%), Gaps = 61/683 (8%) Query: 4 SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALA--GHCKEIIV 61 SY ++ I L + R RP + +G L+ + E++DNAI+E + + Sbjct: 2 SYTAADITELDDVQHTRLRPAVNLG----LDVLNTALRELIDNAIEEVADPSHGGSAVTI 57 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVS--GGLHGVG 119 T+H D SV V DDGRG+P P G + + AGGKF ++ S GL+G+G Sbjct: 58 TLHDDGSVGVADDGRGLPVDSDPVNGKNGIVKTLGTARAGGKFSAHTDAASTGAGLNGIG 117 Query: 120 VSVVNALSQKLELVIQREGKIHRQIYEHGVP------------------QAPLAVTG--E 159 + +S + ++ ++R GK + Q + G P L TG + Sbjct: 118 AAAAVFISARTDVTVRRAGKTYLQSFGRGYPGVFEGKDFDPDAPFTRADTQKLRGTGNRK 177 Query: 160 TEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDH---- 215 + GT VR + E+L R + ++ GV + + D+ ++ Sbjct: 178 PDVHGTTVRILFDPAVVPDSQIDIGEVLL-RAHAAARMSPGVHLSVIDEGWPGDEVAPAL 236 Query: 216 ---FHYEGGIKAFVEYLNKNKTPIHPNIF-------YFSTEKDGIGVEVALQWNDGFQEN 265 F G ++ + P + ++T + +L Sbjct: 237 LEPFTGPWGTDTLLDLMCTAAGTPAPGVRAVVEGRGEYTTGRGPTPFRWSLTAGPAEPAT 296 Query: 266 IYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYS--KKAKVSATGDDAREGLIAVV 323 + F N + GG+HL ++ L + K + D V Sbjct: 297 VAAFCNTVRTPGGGSHLTAAMKGLSEALADRASRMRDLGLAKGEEGPEAQDFAAVTALAV 356 Query: 324 SVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLE--NPTDAKIVVGKIIDAARA 381 + PD + SQ K + S + A+ + + + N + +++ARA Sbjct: 357 DTRAPDVAWDSQAKTAVSSRSLNVAMAPDVARSVTIWAANPANGDAVSLWTKLALESARA 416 Query: 382 RE----AARRAREMTRRKGALDLAGLPGKLADCQER-DPALSELYLVEGDSAGGSAKQGR 436 R A R+R ++ KG LP KL +E + +EL+L EGDSA G+ K R Sbjct: 417 RRSAEGAKARSRAASKAKGLGTNLSLPPKLLPSRETGRGSGAELFLCEGDSALGTIKAAR 476 Query: 437 NRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIM 496 + QA PLKGK NV +K + E ++ LGCG+ RD +P+ RY I+ Sbjct: 477 DATFQAAFPLKGKPPNVYGFALNKARAKDEFDSIERILGCGV-RDNCDPELCRYDRILFA 535 Query: 497 TDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQ 556 +DAD DG +I + L++ F +VE G VY+ PPL+ VK G Q Y +D+ D Sbjct: 536 SDADPDGGNINSSLISMFLDFYRPLVEAGMVYVTLPPLFVVKDGTQRIYCQDESERDAAV 595 Query: 557 ISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLT 616 + GE + +++ R + + + L Sbjct: 596 AKMKATS-KRKVEVQRNKGLGEMDAD-----DFWNTVLDPQRRTVIRVHPDD--SENKLH 647 Query: 617 EADLSDEQTVTRWVNALVSELND 639 R A V+ D Sbjct: 648 HTLFGGPPEGRRTWMADVASRVD 670 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 68/176 (38%), Gaps = 5/176 (2%) Query: 628 RWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEY 687 A + D + + + E ++ I+ D ++ Sbjct: 497 ALNKARAKDEFDSIERILGCGVRDNCDPELCRYDRILFASDADPDGGNINSSLISMFLDF 556 Query: 688 RRICTLGEKLRGLLEEDAFIERGERRQPVASFEQ---ALDWLVKESRRGLSIQRYKGLGE 744 R + L ++ G +R + A+ + S+R + +QR KGLGE Sbjct: 557 YRPLVEAGMVYVTLPPLFVVKDGTQRIYCQDESERDAAVAKMKATSKRKVEVQRNKGLGE 616 Query: 745 MNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAA 800 M+ + W T +DP+ R ++RV D+ ++L TL G E RR ++ + A + Sbjct: 617 MDADDFWNTVLDPQRRTVIRVHPDDSE--NKLHHTLFGGPPEGRRTWMADVASRVD 670 >UniRef50_B6EUG7 DNA gyrase subunit B (Fragment) n=6 Tax=Actinomycetales RepID=B6EUG7_RHOER Length = 446 Score = 350 bits (897), Expect = 2e-94, Method: Composition-based stats. Identities = 148/288 (51%), Positives = 205/288 (71%), Gaps = 1/288 (0%) Query: 208 KRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIY 267 K+ K+ +HY G+ +V+YLNK+K+ IHP I F + D VE+A+QWN G++E+++ Sbjct: 160 KKLEKKVSYHYPDGLIDYVKYLNKSKSEIHPTIVGFEAKGDDHEVEIAMQWNSGYKESVH 219 Query: 268 CFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKV 327 F N I +GGTH GFRAA+T +N Y + K+ + TGDD REGL AVVS +V Sbjct: 220 TFANTINTHEGGTHEEGFRAALTTLMNRYAREHKLLKEKDPNLTGDDCREGLAAVVSARV 279 Query: 328 PDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARR 387 DP+F QTK KL ++E+K V++ +NE LA + NP +AK +V K + ++ AR AAR+ Sbjct: 280 GDPQFEGQTKTKLGNTELKGFVQRAVNEHLAFWFDANPAEAKAIVNKAVASSHARVAARK 339 Query: 388 AREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLK 447 AR++ RRK A D+ GLPGKLADC+ +DP +EL++VEGDSAGGSAKQGR+ QAILPL+ Sbjct: 340 ARDLVRRKSATDMGGLPGKLADCRTKDPNAAELFIVEGDSAGGSAKQGRDSMYQAILPLR 399 Query: 448 GKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 495 GKILNVEKAR D++L + EV +ITALG GI +E++ +KLRYH I++ Sbjct: 400 GKILNVEKARLDRVLKNAEVQAIITALGTGIN-EEFDIEKLRYHKIVL 446 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 49/101 (48%), Positives = 69/101 (68%), Gaps = 2/101 (1%) Query: 109 YKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVR 168 Y VSGGLHGVG+SVVNALS ++E I+R GK Q + VP L TGT +R Sbjct: 1 YAVSGGLHGVGISVVNALSTRVEADIKRAGKHWIQNFNMAVPD-ELVEGSNARGTGTAIR 59 Query: 169 FWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKR 209 FWP E F TEF+++++++RL+E++FLN G++I L+D+R Sbjct: 60 FWPDPEIF-ETTEFDFDVISRRLQEMAFLNKGLTITLKDER 99 >UniRef50_B4V0A2 DNA gyrase subunit B n=1 Tax=Streptomyces sp. Mg1 RepID=B4V0A2_9ACTO Length = 387 Score = 345 bits (884), Expect = 6e-93, Method: Composition-based stats. Identities = 145/389 (37%), Positives = 203/389 (52%), Gaps = 13/389 (3%) Query: 1 MSNS---YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCK 57 MS YD+S I+VL+G +AVRKRPGMY+G T + GL MVFEV D A++E LAG Sbjct: 1 MSEEDTRYDASHIQVLEGWEAVRKRPGMYVGSTSE-RGLRQMVFEVADRAVNEVLAGRAA 59 Query: 58 EIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHG 117 + +T+ D V V DDG G+P G E ++T + AG V+ G G Sbjct: 60 SVDITLMPDGGVCVADDGPGVPIDETEGAGGPGLEALLTQMQAGVGTGGRHD-VTLGFCG 118 Query: 118 VGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFT 177 VG +VVNALS ++ ++REG + Q Y GV PL G +GT + FWP + F Sbjct: 119 VGPAVVNALSCRMTAEVRREGVLWVQEYARGVAATPLTEVGTATGSGTTIAFWPDADIFG 178 Query: 178 NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE---DHFHYEGGIKAFVEYLNKNK- 233 TEF ++ L +R RE++FLN G+ I L D R E + GG + V++L+ + Sbjct: 179 -ATEFSFDGLEERFREVAFLNQGLEISLTDLRRPDESRSVRLRFPGGTRDLVDFLDGHAA 237 Query: 234 --TPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTR 291 TP+ F + G +EVA +W E + F N+ P GGTH GFR MT Sbjct: 238 ASTPVDTIAFECEDPRMGGVMEVAFRWCSCPGERVQSFANSRPTV-GGTHAVGFRDGMTA 296 Query: 292 TLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQ 351 + AY ++G D EGL AVVSVK+ P+F T+ L +SEV+ V Q Sbjct: 297 AVTAYAREQGLLTPMDPGFDADRIGEGLTAVVSVKLDRPEFEGSTRGVLGNSEVRDCVGQ 356 Query: 352 QMNELLAEYLLENPTDAKIVVGKIIDAAR 380 + + L +L E+ A V+G+ + AR Sbjct: 357 AVQDHLGRWLKEDRERAAAVIGQSVQGAR 385 >UniRef50_Q56C43 Gp60plus39 DNA topoisomerase subunit n=3 Tax=T4-like viruses RepID=Q56C43_9CAUD Length = 630 Score = 344 bits (883), Expect = 6e-93, Method: Composition-based stats. Identities = 144/599 (24%), Positives = 236/599 (39%), Gaps = 66/599 (11%) Query: 13 LKGLDAVRKRPGMYIGDT----------------DDGTGLHHMVFEVVDNAIDEALAG-- 54 L D +RKRP MY+G + GL ++ E++DN+IDEA+ Sbjct: 30 LSDRDHIRKRPNMYVGSVNREAHERFIMGKFRKVEYVEGLVKIINEILDNSIDEAIRTDF 89 Query: 55 -HCKEIIVTIHADNSVSVQDDGRGIP---TGIHPEEGVSAAEVIMTVLHAGGKFDDNSYK 110 I V I N V++ D+GRGIP + V T+ +G FDD + + Sbjct: 90 KFANRIEVKIDH-NLVTISDNGRGIPQDDVRTPEGKIVPKPVAAWTMAKSGSNFDDEN-R 147 Query: 111 VSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFW 170 V+ G++GVG + N S + G Q T T++ GT V+F Sbjct: 148 VTMGMNGVGSFLTNCYSSIFIGETSNGKRKVTINCTDG-AQNMDYRTSPTKEQGTTVKFT 206 Query: 171 PSLETFT--NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEY 228 P F + E E++ RL L+ V + + F G + Y Sbjct: 207 PDFSIFGVDGIDEETKEVIKDRLMALAVAFPSVKFTYNGETLP--NKFAMYGAM-----Y 259 Query: 229 LNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAA 288 + T + I + + F N + ++GG H+ Sbjct: 260 GDSTITQTNNKISFILASTED-------------GFKQKSFVNGLDTKNGGVHVDCMIDG 306 Query: 289 MTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSV-KVPDPKFSSQTKDKLVSSEVKS 347 + L + KK + +E L VV + P F SQTK+KL ++ + Sbjct: 307 IYAELEPMIK-----KKHAIEIPKARVKECLTLVVFLHNFNAPAFDSQTKEKLTNTAGEF 361 Query: 348 AVEQQM-NELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGK 406 + + +A+ +++ ++ + +A EAA + + K A +P Sbjct: 362 NNHAGLNYKKIAKQIMDTSEIITPIIESALIRKQAAEAAAITKAKKKAKKAKIAKHVPAS 421 Query: 407 LADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQE 466 D D + L+L EGDSA G + RN + Q PL+GK LN F +L ++E Sbjct: 422 GID---TDGVETTLFLTEGDSAVGQFIECRNEETQGAFPLRGKPLNTWGMSFTDILKNKE 478 Query: 467 VATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGH 526 + L+ L G + ++ Y +I IM DADVDG I TLL+ FF R PE+ E+ Sbjct: 479 LFELMAILNLHPG----DSSEMAYDNIGIMVDADVDGGDILTLLIAFFSR-WPELFEKKK 533 Query: 527 VYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIAL----DGATLHTNASAPALAGEALE 581 + + P+ K GK E++ + ++ G + + G+ L+ Sbjct: 534 IRYIRTPIIIAKIGKDEKWFYSMDDFVPFRDKAKEVRYIKGLGSLRKSDYDRVLGDQLK 592 >UniRef50_C0DAN0 Putative uncharacterized protein (Fragment) n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DAN0_9CLOT Length = 422 Score = 343 bits (880), Expect = 1e-92, Method: Composition-based stats. Identities = 153/406 (37%), Positives = 218/406 (53%), Gaps = 79/406 (19%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 N Y + I++L+GL+AVRKRP MYIG+T GLHH+V E+VDNA+DEALAGHC + V Sbjct: 19 KNEYRAEQIQILEGLEAVRKRPAMYIGNT-SSAGLHHLVCEIVDNAVDEALAGHCSAVSV 77 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 T++ D SV++ D+GRGIP GI + G+SA +V+ TVLHAGGKFD ++YKVSGGLHGVG S Sbjct: 78 TLNRDGSVTITDNGRGIPVGIQKKTGLSALQVVFTVLHAGGKFDSSNYKVSGGLHGVGAS 137 Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQA---------------------PLAVTGET 160 VVNALS L + ++R+G +Q Y GVP P+ +T + Sbjct: 138 VVNALSLWLRVEVRRDGGTWKQSYSRGVPDGAVTKEEAVRGCATGPLARQDDPIPLTRQD 197 Query: 161 EK-----------------------TGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFL 197 + +GT V F P E F + F+YE+L KR+RE +FL Sbjct: 198 DPVPSARNEAPFSPARQGALDTVSVSGTTVTFLPDPEIFRDPV-FQYEVLKKRMRETAFL 256 Query: 198 NSGVSIRLRDKR---------------------------------DGKEDHFHYEGGIKA 224 G+S+ L D R ++DHF E G++ Sbjct: 257 TKGLSLTLTDLRADCKHGSNTAATPDATTADAPKSPESSNLPQPTLPRQDHFLCEKGLED 316 Query: 225 FVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAG 284 FV +LN++ +P++ I + I VE A+Q G+ + +Y F NNI +GG+H+ G Sbjct: 317 FVNWLNRDASPLYSEIICGGADSGDIQVEFAIQHTAGYDQRLYSFVNNISTPEGGSHVTG 376 Query: 285 FRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDP 330 F +A+ R LN K++ ++ EGL AV+SV++ DP Sbjct: 377 FHSALVRALNHCARNLKLLKESAPPLCREELTEGLTAVISVRMQDP 422 >UniRef50_Q76Z86 Topoisomerase II large subunit n=1 Tax=Aeromonas phage Aeh1 RepID=Q76Z86_9CAUD Length = 613 Score = 336 bits (861), Expect = 2e-90, Method: Composition-based stats. Identities = 148/665 (22%), Positives = 251/665 (37%), Gaps = 80/665 (12%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTDD----------------GTGLHHMVFEVVDNAIDE 50 S KVL + MYIG T GL + EV+DN++DE Sbjct: 2 SQEFKVLSDKEHCLINTDMYIGSTSTETHDVLVDGKFVQIAYVPGLVKITDEVIDNSVDE 61 Query: 51 ALAG---HCKEIIVTIHADNSVSVQDDGRGIP---TGIHPEEGVSAAEVIMTVLHAGGKF 104 A+ H +I V I DN VSV+D+GRG+P V T AG F Sbjct: 62 AIRTNFEHANQIEVVI-KDNQVSVKDNGRGLPQGMVVTPEGVEVPLPLAAWTRARAGSNF 120 Query: 105 DDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTG 164 + + + G +GVG ++ N S + G + T + G Sbjct: 121 S--ADRKTIGKNGVGSALTNFFSDSF-VGETGNGTNTVTVRCTNNADEVSYTTKAGKFKG 177 Query: 165 TMVRFWPSLETFT--NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGI 222 T V F P F + E +++ RL L+ ++ + K+ EG Sbjct: 178 TNVTFVPDFTRFGVFQLDEDFEQVIQSRLLTLAVNFPPITFKYNGKKV--------EGKF 229 Query: 223 KAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 282 F + V + ++ + F N + + GG H+ Sbjct: 230 SKFAAQFGD------------VVSHNDDNVSLFFATSEEY--RQLSFVNGVHTKQGGNHV 275 Query: 283 AGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVK-VPDPKFSSQTKDKLV 341 G +++ L + ++ K+ +E L+ + ++ + PK+ QTK++L Sbjct: 276 YGVLDSLSDELIPMIKRQ-----HKIEINKARIKECLLIGLFIRNLVAPKYDGQTKERLS 330 Query: 342 SSEVKSAVEQQM-NELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDL 400 S + + + LA +L+ P V+ II +A A++ A T+ + Sbjct: 331 SPWAQIRDHMNLDYKALARKILKTPE----VIDPIIASALAKKEAADKAAATKAQKKAKK 386 Query: 401 AGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 460 A + +A + L+L EGDSA G + RN + Q PL+GK+LNV + Sbjct: 387 ANVAKHVAAAGLGR-LKTMLFLAEGDSAIGPFTRFRNEETQGSYPLRGKMLNVWNLPDHE 445 Query: 461 MLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDG-SHIRTLLLTFFYRQMP 519 +L ++E+A L+ L + E Y I IMTDAD DG I L + FFY+ P Sbjct: 446 VLKNKEIADLLGILNVELRSKEAPA----YTDIAIMTDADQDGKGSIAMLAIAFFYKFWP 501 Query: 520 EIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEA 579 E+G ++I + P Y GK+ + + S DG H + Sbjct: 502 HWFEQGRIHIVRTPEYISTNGKKTDWSYSRDEF----RSKKFDGKWTHRHIKGLGSLTVE 557 Query: 580 LEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELND 639 + ++ I + + ++ + P L E D++ + ++ Sbjct: 558 GDDC-----EYKQCIENL--VLEQVVIDD--QTPELLEMLFGDDEHKRKQWLGFDDDIII 608 Query: 640 KEQHG 644 +E+ G Sbjct: 609 EEEEG 613 Score = 46.3 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 22/157 (14%), Positives = 47/157 (29%), Gaps = 7/157 (4%) Query: 638 NDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKL 697 N + + E + I + D + Y+ E+ Sbjct: 449 NKEIADLLGILNVELRSKEAPAYTDIAIMTDADQDGKGSIAM-LAIAFFYKFWPHWFEQG 507 Query: 698 RGLL-EEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPE-QLWETTM 755 R + +I ++ + + + + + KGLG + E E Sbjct: 508 RIHIVRTPEYISTNGKKTDWSYSRDEFRSKKFDGK--WTHRHIKGLGSLTVEGDDCEYKQ 565 Query: 756 DPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFI 792 E+ + +V + D +L L GD R+ ++ Sbjct: 566 CIENLVLEQVVIDD--QTPELLEMLFGDDEHKRKQWL 600 >UniRef50_B5H7D6 DNA gyrase subunit B n=2 Tax=Streptomyces RepID=B5H7D6_STRPR Length = 391 Score = 332 bits (851), Expect = 3e-89, Method: Composition-based stats. Identities = 133/380 (35%), Positives = 197/380 (51%), Gaps = 11/380 (2%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 ++ YD++ I+VL+GL+ VRKRPGM++G T + GLH MVFEVV A++E +AG + V Sbjct: 5 AHMYDATHIEVLEGLEVVRKRPGMWVGSTGE-RGLHQMVFEVVGRAVNENVAGRAGSVAV 63 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAG-GKFDDNSYKVSGGLHGVGV 120 + D V V DDG G+P E E ++T +HA + VS +G+G+ Sbjct: 64 ALMPDGEVRVTDDGPGVPAEAVGEAVGPCLEDMLTRIHAQQDAGGRRAIAVSPLGNGLGL 123 Query: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVT 180 V NAL+ L ++R+G Q+Y GV P G +G + F P F Sbjct: 124 GVPNALASSLTAEVRRDGVRWVQVYASGVAVGPPTAAGPAVGSGITLAFRPDAGIF-ETV 182 Query: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE---DHFHYEGGIKAFVEYLNKNKTP-- 235 E +++LA+R REL+FLN G+ I L D+R E + FH GG + FV L + + Sbjct: 183 ECSFDVLAERFRELAFLNRGLDISLSDERSAGECRSERFHSPGGTRDFVLLLGEGRGTGA 242 Query: 236 -IHPNIFYFSTEKDGIG--VEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRT 292 + ++ F E + VEVALQW D +E + + N+ P +GGTH GFR + Sbjct: 243 LVQTDVIGFEREDPRMAGAVEVALQWRDSDEERVRTYANSRPTPEGGTHAEGFRDGVAAA 302 Query: 293 LNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQ 352 +NAY + A D +GL AVVSVK+ P F T +L ++E + VE+ Sbjct: 303 VNAYARQRRLLTSADADLGADRIGKGLTAVVSVKLDQPGFRGATCAELDNTEARFGVEEA 362 Query: 353 MNELLAEYLLENPTDAKIVV 372 + E L +L +P A V+ Sbjct: 363 VREHLGIWLERHPEQAAAVI 382 >UniRef50_C3IT50 DNA gyrase subunit B n=3 Tax=Bacillus thuringiensis RepID=C3IT50_BACTU Length = 726 Score = 332 bits (850), Expect = 5e-89, Method: Composition-based stats. Identities = 160/739 (21%), Positives = 297/739 (40%), Gaps = 90/739 (12%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 +S +Y ++SI L+G + VR+RP +G + G H V E+V N++DE AG ++ Sbjct: 4 LSQNYGNNSIDSLEGAERVRRRPAAVLGSSG-IEGARHGVTEIVGNSVDEGTAGFGSKLD 62 Query: 61 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDN------------- 107 + D S+S++D GRG+P G + +G+S ++ ++AGGK+ D Sbjct: 63 INYFKDGSISIRDYGRGVPMGYNENKGISNWFLVFNEMYAGGKYKDYQEELRAIKDWSTF 122 Query: 108 -----SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAP--------- 153 +Y S GL+G+G + S+ E + +G + + G P Sbjct: 123 NPTDYNYLFSIGLNGLGAASTQYTSEFFEAISITDGIATKMEFRGGYPILKDANGNEVHA 182 Query: 154 -------LAVTG------------ETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLREL 194 L G E+ GT + + P + F++ + + + Sbjct: 183 IIGEERLLEEHGIVLKEYVAETYETEEENGTYIHWKPDIRVFSD-VDITLGWIKDVCESV 241 Query: 195 SFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEV 254 +++ SG+ + L D+ Y+ G + + + K ++ + E + I Sbjct: 242 AYI-SGLDVNLYDEATDTMHE--YQSGTISDLNLILNEKNLVNEDSPSV-YEDNDITHGN 297 Query: 255 ALQWNDGF---------------QENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDK 299 Q N+ F + CF N I + G + A+ + ++ Sbjct: 298 VKQNNENFIYVFKADVSVVRTREKGKTVCFHNAIKMKGGAQY-----RAVDSAVADFVI- 351 Query: 300 EGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAE 359 G V D L VV + QTKD++ + + ++ + L+ Sbjct: 352 -GLGNTKGVKVVERDFEGKLGVVVKSYSNVASYKGQTKDEVDDNFIYRDLKTIIYRLINT 410 Query: 360 YLLENPTDAKIVVGKIIDAARAREA-ARRAREMTRRKGALDLAGLPGKLADCQ---ERDP 415 + D V K+++ A R +A+ + K LP K + E+ Sbjct: 411 EYHKGNKDIIEFVDKVLEEAELRITLQEQAKMLREVKKTSRTRKLPEKFLPSKLFKEKIV 470 Query: 416 ALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALG 475 SEL++VEGDSA S K R+ QAI ++GK+ N KA F K++ S+E+ + + LG Sbjct: 471 KKSELWIVEGDSAKTSVKNARDPLFQAIYAVRGKVTNALKASFKKLMESEEIRDIFSLLG 530 Query: 476 CG-----IGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIA 530 G + +E++ D R+ III TDAD DG IR LL F+ PEI++RG +YI Sbjct: 531 TGMDVELLDDNEFDIDACRFEKIIIGTDADEDGYQIRVLLFVVFWVLAPEIIKRGMLYIG 590 Query: 531 QPPLYKVK-KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNA 589 + P + +K + Y ++ + + A + GE ++ Sbjct: 591 ETPKFGIKLSNGEMVYAINEVDKAEREKEYAGQIVKVERYKG----LGEVNADVLGFTTL 646 Query: 590 TQKMINRMERRYP--KAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQW 647 + N ++ + +L E + + ++T+ R + + ++ + ++ Sbjct: 647 APETRNLIQIKLDPADHILSEFVETLFGKDPYKKRKETMLRVLGSDAMDMFNDTDEKEEF 706 Query: 648 KFDVHTNAEQNLFEPIVRV 666 +A+ E + V Sbjct: 707 SIVDVLDADDVEEENELEV 725 Score = 79.0 bits (193), Expect = 8e-13, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 51/142 (35%), Gaps = 3/142 (2%) Query: 652 HTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGE 711 + + FE I+ D F+ L I+ Sbjct: 542 EFDIDACRFEKIIIGTDADEDGYQIRVLLFVVFWVLAPEIIKRGMLYIGETPKFGIKLSN 601 Query: 712 RR-QPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDA 770 + + + + + + ++RYKGLGE+N + L TT+ PE+R ++++ + A Sbjct: 602 GEMVYAINEVDKAEREKEYAGQIVKVERYKGLGEVNADVLGFTTLAPETRNLIQIKLDPA 661 Query: 771 IAA-DQLFTTLMGDAV-EPRRA 790 + TL G + R+ Sbjct: 662 DHILSEFVETLFGKDPYKKRKE 683 >UniRef50_D2XAH7 DNA topoisomerase II n=1 Tax=Marseillevirus RepID=D2XAH7_9VIRU Length = 1089 Score = 327 bits (839), Expect = 9e-88, Method: Composition-based stats. Identities = 132/676 (19%), Positives = 242/676 (35%), Gaps = 81/676 (11%) Query: 25 MYIGDTDDGTGLHHMVFEVVDNAIDEALAG-----HCKEIIVTIHAD-NSVSVQDDGRGI 78 M G + GL + +E+V NA+D K + V++ + +V +DG I Sbjct: 41 MLFGTLEFPEGLERIFYEIVSNAVDNFFRSSVSGIPMKSVKVSLDRETGYCTVWNDGAHI 100 Query: 79 PTGIHP-----------EEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALS 127 + AE+ A ++D+ + + G +G+G + + S Sbjct: 101 SVEKKEYSYTDELGNTSSSLLYPAELFFGYSKASTNYNDDEVRKTSGRNGLGAKLTSIFS 160 Query: 128 QKLELVIQREGK--IHRQIYEHGVPQ-APLAVTGETEKTG-TMVRFWPSLETFT--NVTE 181 + + K I +Q + + + P + T+K G T VRF P F TE Sbjct: 161 KHFVVRCFDPEKQRIFQQEFFDNLTRRTPPVIEKCTKKKGWTEVRFLPDFARFGLDGWTE 220 Query: 182 FEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIF 241 K LR+ + L +G+S E+ F ++ + +V + + +PN Sbjct: 221 PLLSRFQKTLRD-ASLVTGLSASFN------EEKFSFQT-LPEYVALFSGS----NPNFL 268 Query: 242 YFSTEKDGIGV---EVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAA-MTRTLNAYM 297 S+ + L + QE F N + G H+ ++ A + L A+ Sbjct: 269 CLSSPDSRFALLEKNPELVPTEPSQETSLSFVNGLE-VFTGVHVNAWKNAVLMPLLKAFN 327 Query: 298 DKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELL 357 K+ K K S + L V + P+F+SQTK +L S K +++ Sbjct: 328 AKQKAEGKPKASMKQLECFFHLFVV--CDLDKPEFTSQTKHELASPTPK---TTKVSPEQ 382 Query: 358 AEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPAL 417 + L++ + +R ++ ++ + + A Sbjct: 383 IKKLMK---------WGFVQELSSRLDPKKTKKTKK---LVLDLTKVDDAQLAGTSRSAE 430 Query: 418 SELYLVEGDSAGGSAKQG----RNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITA 473 L L EGDSA A G ++R+ LKGK+LN A + ++E+ L Sbjct: 431 CILILTEGDSAKTLAVSGFTSLKDRERYGAFALKGKVLNTTNATQKTIGKNKELELLKNV 490 Query: 474 LGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPP 533 LG LRY +++M DAD DG HI L+L F ++ PE++E+G V + P Sbjct: 491 LGLSKDLG----KTLRYGKVLLMCDADEDGKHIEGLVLNFLHKHYPELLEKGFVQSLRTP 546 Query: 534 LYKVKKGKQEQYIKDDEAMDQYQISI-ALDGATLHTNASAPALAGEALEKLVSEYNATQK 592 + K GK+E++ +++ + + E K +SE Sbjct: 547 ILKAFLGKREEWFFSTTKFEEWLSKNPGHKNLKVQYFKGLGSSRPEDGRKYLSEQKLVSY 606 Query: 593 MINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVH 652 + + A ++ + L L E + + Sbjct: 607 -------------VADGTEGAWFDLAFSKNKSNERKTW--LAGSLTPDETYEGELSLSDF 651 Query: 653 TNAEQNLFEPIVRVRT 668 + + + R+ Sbjct: 652 IDKRLSTYHRANNRRS 667 >UniRef50_D2TEU4 Putative DNA topoisomerase n=2 Tax=dsDNA viruses, no RNA stage RepID=D2TEU4_9VIRU Length = 1103 Score = 323 bits (828), Expect = 2e-86, Method: Composition-based stats. Identities = 123/705 (17%), Positives = 255/705 (36%), Gaps = 83/705 (11%) Query: 6 DSSSIKVLKGLDAVRKRPGMYIGDTDDG--------------------TGLHHMVFEVVD 45 ++VL D + RPGMY+G + L ++ E + Sbjct: 2 SDQKMQVLTQHDHILARPGMYVGGVEPVEYNKEVMTMTGPKHVKEMMVPALLKIIEEPLA 61 Query: 46 NAIDEALAGH-CKEIIVTIH-ADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGK 103 NA D + K I VT D+S+ ++ + + + P+ + + ++ G Sbjct: 62 NASDASQNNPVAKNIKVTTDQRDSSIKIETNTKFV-IEYVPDGNDYSVALAVSRFMTGTN 120 Query: 104 FDDNSYKVSGGLHGVGVSVVNALSQKLELVIQR--EGKIHRQIYEHGVPQAPLAVTGET- 160 F D+ G HG+G+ + N S+ E+V+ + + I+ + + +V + Sbjct: 121 FGDDDESFKLGQHGLGIKLTNVFSKYFEVVVHDPSTKQSYHGIWTNNMYTVEKSVVKKAS 180 Query: 161 -EKTGTMVRFWPSLETFT---NVTEFEYEILAKRLRELSFLNS-GVSIRLRDKRDGKEDH 215 + + F P L F +T +++I+ ++ +L+ ++ L ++ + Sbjct: 181 HKTPYVSITFIPDLPYFGLRGPLTAGQWDIIHSQVFDLAVTAPKHTTVHLNGEKIPFK-- 238 Query: 216 FHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDG-IGVEVALQWNDGFQENIYCFTNNIP 274 GIK +++ + + I E +G + +EVA+ E+I + N Sbjct: 239 -----GIKGYIQAVMGDSL---DKICMDKVEVNGTVRLEVAVTIARDHAESIV-YVNGAH 289 Query: 275 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 334 G H F+ SKK + R L+ V +P+ +F+S Sbjct: 290 TTRGTIHDYIFKNI----------ANALSKKH--NINPSMLRGLLLIVAEAWIPNARFTS 337 Query: 335 QTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRR 394 Q K++L + K + +++ + L + + +++ ++ + ++M Sbjct: 338 QAKEELYTPVSKYGFKWDLSQSFIKSLAKTD-----LYTSVVNLLHDKDDKKAQKDMKVG 392 Query: 395 KGALDLAGLPGKLADCQER-DPALSELYLVEGDSAGGSAKQGRN----RKNQAILPLKGK 449 K + K + +EL + EGDSA A GRN N + PL+GK Sbjct: 393 KNKIPQF---AKYDPATKLFKVNDAELLITEGDSAKQLANVGRNAVKRHANMGLYPLRGK 449 Query: 450 ILNVEKARFDKMLSSQEVATLITALGCGIGRDEY--NPDKLRYHSIIIMTDADVDGSHIR 507 ++N + + +++E++ LI LG + + L Y ++I TD DVDGSHI Sbjct: 450 LMNAGNSSLKALAANKEISELIQILGITPYKKYDLASARALPYRHLVIFTDQDVDGSHIS 509 Query: 508 TLLLTFFYRQMPEIVE--RGHVYIAQPPLYKVKKGKQE-QYIKDDEAMDQYQISIALDGA 564 L + +P ++E ++ P+ K+ GK + D +Y Sbjct: 510 GLCIQLIMTLVPSLLEVFPDYIKRFATPILKITSGKHAGKTFYTDAEYREYTDKHPDSKN 569 Query: 565 TLHTNASAPALAGEALEKLVSEYNATQKMINRMERRY-PKAMLKELIYQPTLTEADLSDE 623 + + K + K + + P +L + + Sbjct: 570 ASVKYYKGLGTSTDKDAK--QYFTEWSKNVITINNTGQPSTEAMKLAFDAKM-------S 620 Query: 624 QTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRT 668 ++ + + + + F +R+ Sbjct: 621 AERREYLANQYNPNANINYSAQSTTIERFIYDDLMHFSNYDNIRS 665 >UniRef50_Q196X4 DNA topoisomerase 2 n=1 Tax=Invertebrate iridescent virus 3 RepID=TOP2_IIV3 Length = 1113 Score = 322 bits (825), Expect = 4e-86, Method: Composition-based stats. Identities = 130/668 (19%), Positives = 221/668 (33%), Gaps = 86/668 (12%) Query: 8 SSIKVLKGLDAVRKRPGMYIGDTD----------------------DGTGLHHMVFEVVD 45 + + V +YIGDT L + EV+ Sbjct: 7 QKYTIKNDIQHVLDCSDVYIGDTAPTARSEWMFDDAVNQIVWRPTTTPEALVRIFVEVLT 66 Query: 46 NAIDEALAGH------CKEIIVTIH-ADNSVSVQDDGRGIPTGIHPEEGV---------- 88 NA+D CK I V + SV +DG+ IP + + GV Sbjct: 67 NAVDNIERSINGGHELCKNIKVDVDLKTGKTSVWNDGQVIPVVKNCDNGVVQPPPPTTEQ 126 Query: 89 -----------SAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELV--IQ 135 +I +D+ + +VS G +GVGV N S +V Sbjct: 127 DRLAYEKLNREYIHTIIFGHFRTSSNYDNETDQVS-GKNGVGVKCTNIFSSWFSVVGVDP 185 Query: 136 REGKIHRQIYEHGVPQ--APLAVTGETEKTGTMVRFWPSLETFT--NVTEFEYEILAKRL 191 Q + + + AP V + T+V + P F + E I K + Sbjct: 186 DRKLKFSQEWRSNMTKSGAPQVVKCALKTGYTLVEYVPDFARFKLKSYPEDVESIFKKLV 245 Query: 192 RELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIG 251 + S + +R ++ Y Y N N+T + + + K + Sbjct: 246 VDASAFFPNTAFFFNGERTVVKNAVAYAKL------YYNLNETAVDSVVIDYKDSKVVV- 298 Query: 252 VEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSAT 311 F N GG H+ + + L A ++ K VS T Sbjct: 299 ------VGSATPLPPVSFVNGQITPAGGQHVTNWSRVIFGALLAALN-----GKKNVSLT 347 Query: 312 GDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIV 371 D + KV PKF Q K+ L S +V++ ++ + + + ++ + + K+V Sbjct: 348 KADIAPYFQLFIHSKVSKPKFDGQNKNCLKSPKVEAHLDATILKKMLKWKIISTIQDKVV 407 Query: 372 VGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGS 431 K A + E R + G L C + ++ Y V G G Sbjct: 408 KSKEYLALKKIECRRTPIVKVDGYDQANRLGPDSVLIVC---EGLSAKSYAVAGIQKGLF 464 Query: 432 AKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDE---YNPDKL 488 K+GR ILPL+GK LNV+ K+ ++ V+ I L D N L Sbjct: 465 NKKGR--TYFGILPLRGKFLNVKNTTPLKIGQNKVVSDFIKVLNLKFNLDYRKATNYATL 522 Query: 489 RYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIV-ERGHVYIAQPPLYKV-KKGKQEQYI 546 Y +++I+TDAD DG HI+ L+L + P + +G +Y + P+ K+ K Q Sbjct: 523 NYGTLLILTDADKDGIHIKGLILNLIHELFPTLFHRQGFIYSMETPIVKILHKKGQPTLF 582 Query: 547 KDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAML 606 D+ + + ++ + + + + Sbjct: 583 YDENSFEDWRAQHP-ELKHFKYYKGLGTIGPADVAAFFGSKVVRYHYDEATDAAVNSVFK 641 Query: 607 KELIYQPT 614 E + Sbjct: 642 DENANERK 649 >UniRef50_Q8I528 Term=DNA gyrase subunit B;evidence=inferred from direct assay n=3 Tax=Plasmodium RepID=Q8I528_PLAF7 Length = 1006 Score = 317 bits (813), Expect = 9e-85, Method: Composition-based stats. Identities = 152/456 (33%), Positives = 225/456 (49%), Gaps = 53/456 (11%) Query: 197 LNSGVSIR-LRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPN---IFYFSTEKDGIGV 252 +N + I + + +E G+ ++ + KNKT + + I S I + Sbjct: 440 VNKNIEITDYNNLDFYNYEIIKHEYGLNEYITNITKNKTNLFKDNDKIISISCYHKNIYI 499 Query: 253 EVALQW-NDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSAT 311 ++ ++W ++ + ENI F NN+ DGGTH+ + A++R +N Y K+ K V+ Sbjct: 500 DLRMKWLSNQYNENIISFVNNVNTTDGGTHVDALKYAVSRCVN-YNIKKNEMIKNFVNIP 558 Query: 312 GDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIV 371 G+ REGL A++SVK+ +P+F QTK KL S +KS +E + E L+E P + Sbjct: 559 GEYIREGLTAILSVKMNNPEFEGQTKTKLGSHHLKSILESVIFEKLSEIFDFEPNLLSSI 618 Query: 372 VGKIIDAARAREAARRAREMTRRKGALDLAG-LPGKLADCQERDPALSELYLVEGDSAGG 430 K + A + E A+ AR++ R K + LPGKL DC D + +E+++VEGDSA G Sbjct: 619 YFKALQAKLSDEEAKAARDLIRSKNNQYSSTILPGKLVDCISDDISRNEIFIVEGDSAAG 678 Query: 431 SAKQGRNRKNQAILPLKGKILNVEK-ARFDKMLSSQEVATLITALGCGIGRDEYNP---- 485 SAKQ RNR+ QAILPLKGKILNVEK ++ + E+ +LITALG + D N Sbjct: 679 SAKQARNREIQAILPLKGKILNVEKIKNNKRIFENSELKSLITALGLNVNYDNKNLKNNN 738 Query: 486 -----------------------------------------DKLRYHSIIIMTDADVDGS 504 + LRY +IIMTDADVDG Sbjct: 739 ILSNNKKGKNSKKKSDLKNSRFESTQNNNNILNKKKDILVDNTLRYGKVIIMTDADVDGE 798 Query: 505 HIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGA 564 HIR LLLTF YR EI+E G+VY+A PPLYK+ K D Q+ ++ Sbjct: 799 HIRILLLTFLYRFQKEIIENGNVYVACPPLYKITYNKFFDNSIKDIVTKQFNVTTKQSKF 858 Query: 565 TLHTNASAPALAGEALEKLVSEYNATQKMINRMERR 600 +HT + L + + M N+++ + Sbjct: 859 IIHTYSDQELNNLLKLLDKDKIASEQKNMQNKIKNK 894 Score = 209 bits (531), Expect = 4e-52, Method: Composition-based stats. Identities = 93/282 (32%), Positives = 141/282 (50%), Gaps = 51/282 (18%) Query: 4 SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTI 63 +YD+ I +L+GL+AVRKRPGMYIG+TD GLH ++FE++DN++DE C I V I Sbjct: 122 NYDAKDIVILEGLEAVRKRPGMYIGNTD-VKGLHQILFEIIDNSVDEYNNFECNTIKVVI 180 Query: 64 HADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNS--------------- 108 H D+SV+++D+GRGIP +H + SA E ++TVLH+G KF D+ Sbjct: 181 HKDDSVTIEDNGRGIPCDVHEKTKKSALETVLTVLHSGAKFFDDEMDDEIDNNMNNTGNT 240 Query: 109 ----------------------------------YKVSGGLHGVGVSVVNALSQKLELVI 134 YK S GLHGVG+SV NALS +++ + Sbjct: 241 NTSEKNNRDNISNNNNNNNNNKRTKKNSKESAQKYKYSSGLHGVGLSVANALSSFMKVKV 300 Query: 135 QREGKIHRQIYEHGVPQAPLAVT-GETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRE 193 R KI+ E G L +T K GT + + P F + T+ +++ R+ + Sbjct: 301 FRNNKIYSIELEKGKVTKELTITNCPINKRGTQIHYKPDSSIFKSSTKHNSDLIKNRIHQ 360 Query: 194 LSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTP 235 L++LN ++ D+R ++ + G K+ NK K Sbjct: 361 LAYLNEKLTFYFYDERSENKNSIYISKGNKSNEIIKNKKKNT 402 Score = 94.8 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 36/78 (46%), Positives = 50/78 (64%) Query: 718 SFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLF 777 + D ++ + IQR+KGLGEM +QLW TTMDP R+++RVTV DAI A+ L Sbjct: 923 TDSFIDDNVLFNFSKKYEIQRFKGLGEMMADQLWNTTMDPTVRKLIRVTVNDAIRANDLI 982 Query: 778 TTLMGDAVEPRRAFIEEN 795 +LMG+ + R+ FI EN Sbjct: 983 FSLMGEDSKLRKNFILEN 1000 >UniRef50_Q04PE7 DNA topoisomerase (ATP-hydrolyzing), subunit B n=6 Tax=Leptospira RepID=Q04PE7_LEPBJ Length = 711 Score = 316 bits (809), Expect = 3e-84, Method: Composition-based stats. Identities = 143/711 (20%), Positives = 270/711 (37%), Gaps = 126/711 (17%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMV-------FEVVD-------------- 45 + K L ++ VR R GM++G T H +E+V Sbjct: 15 ERNFKKLSNVEHVRMRTGMWLGQNSASTFEQHFFRKNNEGKYEIVHEELEDVPAKLKCLD 74 Query: 46 ----NAIDEALA----------GHCKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSA 90 NA+DE ++IV + +D V++ D+GRGIP + Sbjct: 75 EACMNAVDEYRKNQKDKTIPEKDKMSKLIVQLSSDRKCVTITDNGRGIPA--------AN 126 Query: 91 AEVIMTVLHAGGKFDDNSYKVS-GGLHGVGVSVVNALSQKLELVIQREGKIHRQIY---- 145 AE + L G FDD+ + G +GVG+S+V +S ++ G ++++ Sbjct: 127 AEGVYLHLMYGENFDDHVKQDHVAGQNGVGISLVRMVSNYFKVKTVNNGSSFKKLFTVHD 186 Query: 146 ------------------------EHGV----------------------PQAPLAVTGE 159 EHG Sbjct: 187 DVKKQIRSYKLSKEDIERVFLYFDEHGKFTDCNLLTKDQIDKLNSLLKKTNMQESIEKAS 246 Query: 160 TEKTGTMVRFWPSLETFTNVT-EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHY 218 E GT V F + + F N+ F +++ + L++++ N G+ ++ K ++ Sbjct: 247 KEDHGTSVEFELNPKYFNNLDISFNVDLMKQYLQDIAMTNPGLEVQFVFKGKKEKYK--- 303 Query: 219 EGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDG---FQENIYCFTNNIPQ 275 ++ H ++ Y+ + G L Q + N+I Sbjct: 304 --------FKKGLDEIFSHSDLVYYKMDYTAPGSASQLHLETYLVIGQNKNLTWVNSIFA 355 Query: 276 RDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQ 335 GG+ + + + KK K S+T +D R V+ ++ +P+F SQ Sbjct: 356 PQGGSAIEYLENRICDEVRKKSQIVALEKKLKTSSTRNDVRNCFHMYVNARLLNPRFKSQ 415 Query: 336 TKDKLVSSEVKSAVEQQMNELLAEYLLENP--TDAKIVVGKIIDAARAREAARRAREMTR 393 K L++ ++ + +++ L +++ + + K+ + K +A E A++ + Sbjct: 416 DKSYLIN-DLNEDIRNAVDKHLEKFIKKTGLLEEIKLQMEKRTQ-LKAFEDAQKGLKKAS 473 Query: 394 RKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 453 R L GK D L++ EGDSA + RN K + PL+GK LN Sbjct: 474 RMNIPKLMPPTGKPGDPG------RVLFVAEGDSAIAGLRPARNPKLHGLFPLRGKPLNC 527 Query: 454 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTF 513 + K ++++E+ ++ +G + + + D+L Y + I+TDAD DG IR+L+L+F Sbjct: 528 KGLSIAKAIANEELKNIVAIVGLPLDQKVKSVDELNYDKVSIITDADFDGYAIRSLMLSF 587 Query: 514 FYRQMPEIVERGHVYIAQPPLYKV-----KKGKQEQYIKDDEAMDQYQISIALDGATLHT 568 FY PE+ E G ++I+ PLY+V K K+ + DD+ + + +G + Sbjct: 588 FYEYWPELFELGFIHISSAPLYEVDVKFGDKKKETVFCIDDKDYEDLIKRVEKNGGEITR 647 Query: 569 NASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEAD 619 GE ++ + + + + ++ L + E Sbjct: 648 K-KRNKGLGETGKEAMKFAVDECMTKITIGNKKDASKIQNLWFHKDFAEQR 697 >UniRef50_Q5CQG8 DNA topoisomerase 2 n=4 Tax=Apicomplexa RepID=Q5CQG8_CRYPV Length = 1797 Score = 315 bits (806), Expect = 5e-84, Method: Composition-based stats. Identities = 103/467 (22%), Positives = 191/467 (40%), Gaps = 32/467 (6%) Query: 238 PNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYM 297 P I Y S K E+ + +DG Q F N+I GGTH++ + +NA + Sbjct: 407 PLIIYESVPK----WEIVISESDGGQFQHVSFVNSICTIKGGTHISYVLDPL---INAIL 459 Query: 298 DKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELL 357 K K + + + + + + +P F SQTK+ L + K ++E Sbjct: 460 KKVQTKNKGGMDVKSNHVKNHIWIFIKCLIVNPSFDSQTKETLTTKVSKFGSVCTLSEKT 519 Query: 358 AEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPG--KLADCQER-- 413 ++++ +V ++ A+ +++ ++M + + L G KL D E Sbjct: 520 INSVVKS-----SIVENVLMWAQLKQSMELKKKMKSNQKNTVTSRLLGIPKLEDANEAGG 574 Query: 414 -DPALSELYLVEGDSAGGSAKQGR---NRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 L L EGDSA S G R + PL+GK+LNV +A F + + + E+ Sbjct: 575 PHSKKCTLILTEGDSAKTSCLAGLSIVGRDYFGVFPLRGKLLNVREASFKQQIGNVEIQN 634 Query: 470 LITALGCGIGRDEYN-PDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVE-RGHV 527 ++ LG GIG+ N P LRY S+++MTD D DGSHI+ L++ + P ++ RG + Sbjct: 635 ILKILGLGIGQKYDNGPVNLRYGSLMLMTDQDHDGSHIKGLIINLIHYYWPSLIHFRGFL 694 Query: 528 YIAQPPLYKVKKGKQEQYIKDDEAMDQYQISI--ALDGATLHTNASAPALAGEALEKLVS 585 P+ K KKG E +Q++ + L+G ++ + Sbjct: 695 KQFVTPIVKAKKGSNEISFFTLYEYEQWRKNNSSNLNGWRFKYYKGLGTSTDLEFKEYFT 754 Query: 586 EYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGS 645 + + M+ + +A+ ++ + TE + ++ S N Sbjct: 755 KIENHSIEFDWMDDQDDEAI--DMAFSKKRTEDRKNWIESYKEGTYVDYSINNQC----R 808 Query: 646 QWKFDVHTNAEQNLFEPIVRVRT--HGVDTDYPLDHEFITGGEYRRI 690 ++ + E LF R+ + +D P + + +++ Sbjct: 809 NLRYFDFIHKELVLFSRYDTTRSIPNLLDGLKPGQRKVLFATFKKKL 855 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 60/257 (23%), Positives = 103/257 (40%), Gaps = 41/257 (15%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTD----------------------DGTGLHHM 39 S + ++ + RP YIG T+ GL+ + Sbjct: 29 SKKTVEERYQKKTQIEHILLRPDTYIGSTEFHEQALWVWDDSNMKMVYKTINYVPGLYKI 88 Query: 40 VFEVVDNAID----------EALAGHCKEIIVTIHADN-SVSVQDDGRGIPTGIHPEEGV 88 E++ NA D + C I V I+ + ++V +DG GIP IH E V Sbjct: 89 FDEILVNAADVKAREISTKNNHIFEKCTCIKVEINREKKEITVFNDGEGIPIEIHREHQV 148 Query: 89 SAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELV--IQREGKIHRQIYE 146 E+I L +DDN +V+GG +G G + N S++ ++ G+I + + Sbjct: 149 YVPELIFGHLLTSDNYDDNEDRVTGGRNGFGAKLTNIFSKEFKVECGDNNTGRIFKMTWY 208 Query: 147 HGVPQAPLAVTGE--TEKTGTMVRFWPSLETFTNVTEFEYEIL---AKRLRELSFLNSGV 201 + + E + K+ + F P L F N+ +F+ +I+ KR+ ++S SGV Sbjct: 209 DNMSKKSEENIKENYSGKSYVKITFKPDLSRFGNMKDFDDDIISLLNKRVYDISG-TSGV 267 Query: 202 SIRLRDKRDGKEDHFHY 218 + L +D Y Sbjct: 268 KVYLNGSLIPIKDFKSY 284 Score = 45.9 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 26/186 (13%), Positives = 52/186 (27%), Gaps = 8/186 (4%) Query: 615 LTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTD 674 L L+ + + V N + G + ++ + D Sbjct: 611 LRGKLLNVREASFKQQIGNVEIQNILKILGLGIGQKYDNGPVNLRYGSLMLMTDQDHDGS 670 Query: 675 YPLDHEF-ITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESRR- 732 + + + + L+ + ++G + + W S Sbjct: 671 HIKGLIINLIHYYWPSLIHFRGFLKQFVTPIVKAKKGSNEISFFTLYEYEQWRKNNSSNL 730 Query: 733 -GLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKD--AIAADQLFTTLMGDAVEPRR 789 G + YKGLG + E E+ + + D A D F+ E R+ Sbjct: 731 NGWRFKYYKGLGTSTDLEFKEYFTKIENHSIEFDWMDDQDDEAIDMAFSK---KRTEDRK 787 Query: 790 AFIEEN 795 +IE Sbjct: 788 NWIESY 793 >UniRef50_C9E3K9 DNA gyrase subunit B (Fragment) n=1 Tax=Rhodococcus sp. BX2 RepID=C9E3K9_9NOCA Length = 352 Score = 300 bits (769), Expect = 1e-79, Method: Composition-based stats. Identities = 122/335 (36%), Positives = 178/335 (53%), Gaps = 37/335 (11%) Query: 144 IYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSI 203 Y + P L T++TGT VRFWP E F T F +E +A+RL+E++FLN G++I Sbjct: 19 TYTNSKP-GELVKGEPTKRTGTTVRFWPDPEIF-ETTTFNFETVARRLQEMAFLNKGLTI 76 Query: 204 RLRDKRDGKED----------------------------------HFHYEGGIKAFVEYL 229 L D+ E+ +HY GG++ +V ++ Sbjct: 77 TLTDEGVAPEEVTDEDVPETAEAPKTAEDEAVEAAEPEVHKVKVRTYHYPGGLEDYVRHI 136 Query: 230 NKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 N+ K+PIH ++ F+ + G +EVA+QWN G+ E+++ F N I +GGTH GFRAA+ Sbjct: 137 NRTKSPIHNSVVGFTAKGTGHELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAAL 196 Query: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 T +N Y + K + TGDD REGL A++SVKV +P+F QTK KL ++EVKS V Sbjct: 197 TTVVNRYAKDKKLLKDKDPNLTGDDIREGLAAIISVKVAEPQFEGQTKTKLGNTEVKSFV 256 Query: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 ++ NE ++ + NP DAK +V K + +A AR AAR+ARE+ RRK A + GKL Sbjct: 257 QKACNEHISHWFEANPADAKTIVTKAVSSAHARVAARKARELVRRKSATEHRWSAGKLRR 316 Query: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAIL 444 +DP+ + GDS R Q Sbjct: 317 LPSKDPSSARSTSWRGDSQVAPQVGSR-LDVQGSF 350 >UniRef50_C1SL26 DNA gyrase subunit B n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SL26_9BACT Length = 322 Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats. Identities = 132/335 (39%), Positives = 198/335 (59%), Gaps = 13/335 (3%) Query: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 +ITALG GIG+D++N +KLRYH IIIMTDADVDG+HI TL++TFF+R M EI+ERG++Y+ Sbjct: 1 MITALGTGIGKDDFNIEKLRYHKIIIMTDADVDGAHISTLIMTFFFRYMTEIIERGYLYM 60 Query: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNA 589 A PPLYKVKKGK E+YI+++E M Y + LDG + P E LE L+ Sbjct: 61 ASPPLYKVKKGKSERYIQNEETMVNYLLDQGLDGVDI--AHVQPHRYKELLENLIKLNRM 118 Query: 590 TQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKF 649 K ++ Y + ++K L L + L D+ +V+ L++ + Sbjct: 119 VTKF---EKKGYSRKLVKLLASYDDLHFSKLEDKD----FVDGLLAAMQKYGILDQYVTN 171 Query: 650 DVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIER 709 ++ N E + + + +H V ++ + + E+R + LG L+ + + + Sbjct: 172 EIEFNEEYGRYN--ISLASHSVTVS--INTDLLATPEFRELRRLGVYLKEIGDAPYKLNV 227 Query: 710 GERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKD 769 + + + ++ + ++GL +QRYKGLGEMNPEQLWETT+DP+SR + RV ++D Sbjct: 228 DGEITNFETLTEFVSFVEQRGKKGLGVQRYKGLGEMNPEQLWETTVDPQSRTLYRVRIED 287 Query: 770 AIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 804 A A++LF+ LMGD V PRR FIE NAL N+DI Sbjct: 288 AEMANELFSLLMGDVVAPRREFIENNALNVRNLDI 322 >UniRef50_P09176 DNA topoisomerase large subunit n=13 Tax=T4-like viruses RepID=TOPL_BPT4 Length = 516 Score = 283 bits (723), Expect = 2e-74, Method: Composition-based stats. Identities = 113/505 (22%), Positives = 207/505 (40%), Gaps = 55/505 (10%) Query: 8 SSIKVLKGLDAVRKRPGMYIGD----------------TDDGTGLHHMVFEVVDNAIDEA 51 + IK+L ++ ++KR GMYIG GL ++ E++DN++DE Sbjct: 4 NEIKILSDIEHIKKRSGMYIGSSANETHERFMFGKWESVQYVPGLVKLIDEIIDNSVDEG 63 Query: 52 LAG---HCKEIIVTIHADNSVSVQDDGRGIP---TGIHPEEGVSAAEVIMTVLHAGGKFD 105 + +I VTI +N V+V+D+GRGIP E + T+ AGG F Sbjct: 64 IRTKFKFANKINVTI-KNNQVTVEDNGRGIPQAMVKTPTGEEIPGPVAAWTIPKAGGNFG 122 Query: 106 DNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGT 165 D+ +V+GG++GVG S+ N S +G+ + GT Sbjct: 123 DDKERVTGGMNGVGSSLTNIFSVMFVGETGDGQNNIVVRCSNGMENKSWEDI-PGKWKGT 181 Query: 166 MVRFWPSLETFT--NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIK 223 V F P +F +++ +I RL+ L+ + + K+ +G K Sbjct: 182 RVTFIPDFMSFETNELSQVYLDITLDRLQTLAVVYPDIQFTFNGKKV--------QGNFK 233 Query: 224 AFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLA 283 + +++ E++ + V + + NNI ++GG H+ Sbjct: 234 KYARQYDEHA---------IVQEQENCSIAVGRSPD---GFRQLTYVNNIHTKNGGHHID 281 Query: 284 GFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVK-VPDPKFSSQTKDKLVS 342 + L + + K K+ T +E L V+ V+ + + + QTK++L S Sbjct: 282 CAMDDICEDLIPQIKR-----KFKIDVTKARVKECLTIVMFVRDMKNMRLIRQTKERLTS 336 Query: 343 SEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAG 402 + Q++ A+ + + + + ++ II+AA AR+ A T+ A Sbjct: 337 PFGEIRSHIQLD---AKKISRDILNNEAILMPIIEAALARKLAAEKAAETKAAKKASKAK 393 Query: 403 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 462 + + A + L+L EGDSA G R+++ PL+GK+LN + ML Sbjct: 394 VHKHIKANLCGKDADTTLFLTEGDSAIGYLIDVRDKELHGGYPLRGKVLNSWGMSYADML 453 Query: 463 SSQEVATLITALGCGIGRDEYNPDK 487 ++E+ + G +G + + Sbjct: 454 KNKELFDICAITGLVLGEKAFEEKE 478 >UniRef50_Q00942 DNA topoisomerase 2 n=7 Tax=African swine fever virus RepID=TOP2_ASFB7 Length = 1192 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 109/649 (16%), Positives = 200/649 (30%), Gaps = 87/649 (13%) Query: 31 DDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHA----DNSVSVQDDGRGIPTGIHP-- 84 D L + E++ NA D A H K VT S ++DG GIP H Sbjct: 49 DHCPALLKIFDELIVNATDHERACHSKTKKVTYIKISFDKGVFSCENDGPGIPIAKHEQA 108 Query: 85 ----EEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKI 140 + V EV AG + + GG +GVG+ + SQ L + Sbjct: 109 SLIAKRDVYVPEVASCFFLAGTNINKAKDCIKGGTNGVGLKLAMVHSQWAILTTADGAQK 168 Query: 141 HRQIYEHGVPQAPLAVTGETEKTGTMVRFWP--------SLETFTNVTEFEYEILAKRLR 192 + Q + + + T + P + T + I + + Sbjct: 169 YVQQINQRLDIIEPPTITPSREMFTRIELMPVYQELGYAEPLSETEQADLSAWIYLRACQ 228 Query: 193 ELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGV 252 +++ G +I DK K + N T I + + Sbjct: 229 CAAYVGKGTTIYYNDKPCRTGSVMALA---KMYTLLSAPNSTIHTATIKADAKPYSLHPL 285 Query: 253 EVALQWNDGF-QENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKE--GYSKKAKVS 309 +VA + F + N + G H+ + +T+N + K+ K Sbjct: 286 QVAAVVSPKFKKFEHVSIINGVNCVK-GEHVTFLK----KTINEMVIKKFQQTIKDKNRK 340 Query: 310 ATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAK 369 T D+ + V+ +P +++ Q KD+L +E + + + Sbjct: 341 TTLRDSCSNIFVVIVGSIPGIEWTGQRKDELSIAENVFKTHYSIPSSFLTSMTRS----- 395 Query: 370 IVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAG 429 I+D + + + + L EGDSA Sbjct: 396 -----IVDILLQSISKKDNHKQVDVDKYTRARN-------AGGKRAQDCMLLAAEGDSAL 443 Query: 430 GSAKQGR----------NRKNQAILPLKGKILNVEKA--------------RFDKMLSSQ 465 + G + ++ L G I+N K R +++ +++ Sbjct: 444 SLLRTGLTLGKSNPSGPSFDFCGMISLGGVIMNACKKVTNITTDSGETIMVRNEQLTNNK 503 Query: 466 EVATLITALGCGIGRDEYNPD---KLRYHSIIIMTDADVDG-SHIRTLLLTFFYRQMPEI 521 + ++ LG + KLRY I+ D D+DG I LLL +F+ P++ Sbjct: 504 VLQGIVQVLGLDFNCHYKTQEERAKLRYGCIVACVDQDLDGCGKILGLLLAYFHLFWPQL 563 Query: 522 VERGHVYIAQPPLYKVKKGKQE--QYIKDDEAMDQYQISIALDGATLHTNASAPALAGEA 579 + G V PL +V + + ++ D + T N + G A Sbjct: 564 IIHGFVKRLLTPLIRVYEKGKTMPVEFYYEQEFDAW-----AKKQTSLVNHTVKYYKGLA 618 Query: 580 LEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTR 628 + + + M + L + L E + + Sbjct: 619 ----AHDTHEVKSMFKHFDNMVYTFTLDD--SAKELFHIYFGGESELRK 661 >UniRef50_B1N7R8 Gyrase b (Fragment) n=1 Tax=uncultured bacterium RepID=B1N7R8_9BACT Length = 366 Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats. Identities = 218/366 (59%), Positives = 256/366 (69%), Gaps = 48/366 (13%) Query: 92 EVIMTVLHAGGKFDDNSY-KVSGGLH-GVGVSVVNALSQKLELVI-QREGKIH-RQIYEH 147 EVIMTVLHAGGKFDDNSY +VSGGL GVGVSVVNALS KL L+I R G++H +Q Y H Sbjct: 1 EVIMTVLHAGGKFDDNSYTRVSGGLQDGVGVSVVNALSSKLHLIILHRAGQVHEKQEYHH 60 Query: 148 GVPQAPLAV-TGETEKTGTMV-RFWPSLETFT---NVTEFEYEILAKRL-RELSFLNSGV 201 G Q PL V GET+ +GT V RFWPS TF+ T F EILA+RL RELSFLN+GV Sbjct: 61 GDTQYPLRVLIGETDSSGTTVNRFWPSGLTFSHGECRTIFNVEILARRLLRELSFLNAGV 120 Query: 202 SIRLRDKRDGKEDHF-HYEGGIKAFVEY-LNKNKTPIHP--------------------- 238 I LRD+R E + YEGG+ FV+Y +N+ KT ++ Sbjct: 121 RIVLRDERINLEHVYAXYEGGLSEFVKYFINEGKTHLNEIFHFXTADTENGIGVKYINEG 180 Query: 239 -----NIFYFSTE-KDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFR--AAMT 290 IF+F+ + +GI VEVALQWND +QEN+ CFTNNIPQ+DGGTHLAGFR A+T Sbjct: 181 KNHLNEIFHFTADADNGIAVEVALQWNDSYQENVRCFTNNIPQKDGGTHLAGFRALQALT 240 Query: 291 RTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVE 350 R LN Y++ E KK KV+ TGDDAREGL A++SVKVPDPKFSSQTK+KLVSSEVK AVE Sbjct: 241 RGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKPAVE 300 Query: 351 QQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRARE---MTRRKGALDLAG----L 403 Q MN+ + YLLENP AK + GKIIDAARAR+AAR+ARE MTRRK ALD+A Sbjct: 301 QAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREGSYMTRRKSALDIAYPIGLP 360 Query: 404 PGKLAD 409 PGKLAD Sbjct: 361 PGKLAD 366 >UniRef50_B3SFQ4 Putative uncharacterized protein (Fragment) n=1 Tax=Trichoplax adhaerens RepID=B3SFQ4_TRIAD Length = 303 Score = 271 bits (692), Expect = 8e-71, Method: Composition-based stats. Identities = 138/287 (48%), Positives = 195/287 (67%), Gaps = 2/287 (0%) Query: 364 NPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLV 423 NP DAK ++G++ ++A AREAAR+AR+++R++ ++ LPGKLA+CQE+DPA SEL+LV Sbjct: 2 NPKDAKTIIGRMAESAIAREAARKARDLSRKQIGNQISTLPGKLANCQEKDPAKSELFLV 61 Query: 424 EGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEY 483 EGDSAGGSAKQGR+RK QAILPLKGKILNVE+ARFDKML+S E+ TLITALG + E+ Sbjct: 62 EGDSAGGSAKQGRDRKIQAILPLKGKILNVERARFDKMLNSAEIGTLITALGVVLEDKEF 121 Query: 484 NPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQE 543 + KLRYH IIIMTDADVDG+HIRTLLLTFF+R MP ++E+G++YIAQPPLYKVK+G+ + Sbjct: 122 DLTKLRYHKIIIMTDADVDGAHIRTLLLTFFFRYMPGLIEKGYLYIAQPPLYKVKRGQSD 181 Query: 544 QYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPK 603 Y+KD+ A+ Y SI L T+ S + + + L++ ++ + P Sbjct: 182 TYLKDELALRNYLKSIILKNCTVK--ISGREIDEDKTKALLNTLIRFSNIVKNYTNQVPA 239 Query: 604 AMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFD 650 +++EL++ S++ + +K+ + Sbjct: 240 YIIEELLFLGFFNNEPSSNKINAENLIERFNKLFKNKQIKWEVINVE 286 Score = 58.6 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 11/107 (10%), Positives = 25/107 (23%), Gaps = 1/107 (0%) Query: 623 EQTVTRWVNALVSELNDKEQHGSQWKFDV-HTNAEQNLFEPIVRVRTHGVDTDYPLDHEF 681 R+ L S + + + + I+ + VD + Sbjct: 90 NVERARFDKMLNSAEIGTLITALGVVLEDKEFDLTKLRYHKIIIMTDADVDGAHIRTLLL 149 Query: 682 ITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVK 728 Y L ++RG+ + ++L Sbjct: 150 TFFFRYMPGLIEKGYLYIAQPPLYKVKRGQSDTYLKDELALRNYLKS 196 >UniRef50_B4YQA0 DNA gyrase subunit B (Fragment) n=1 Tax=Lactobacillus jensenii RepID=B4YQA0_9LACO Length = 258 Score = 265 bits (677), Expect = 5e-69, Method: Composition-based stats. Identities = 97/257 (37%), Positives = 155/257 (60%), Gaps = 4/257 (1%) Query: 132 LVIQREGKIHRQIYEHGVPQAPLAVTGETEK--TGTMVRFWPSLETFTNVTEFEYEILAK 189 + + R+GK + ++HG + L G + GT+V F+P + FT F+ +IL K Sbjct: 1 VTVMRDGKKYFIDFDHGRVKHELKEIGTVDPSQHGTIVHFYPDPDIFTETIVFDDKILKK 60 Query: 190 RLRELSFLNSGVSIRLRDKRDGKEDH--FHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEK 247 R++EL+FLN G+ + DKR + +HYEGGIK +V +L++ + + Y + Sbjct: 61 RIQELAFLNKGLKLTFTDKRKNSAETDVYHYEGGIKEYVAFLDEKEEKLFDTPVYVEGDY 120 Query: 248 DGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAK 307 DGI VEVALQ+ G++ + F NNI +GG H AGF+ A+TR +N Y K K + Sbjct: 121 DGINVEVALQYTTGYKTTMMTFANNIHTYEGGMHEAGFKTALTRVINDYARKAKIFKDSD 180 Query: 308 VSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTD 367 + +G+D REG+ AV+S+K P+P+F QTK KL +S+ ++AV++ +E +++LLENP+ Sbjct: 181 TNLSGEDIREGMTAVISIKHPNPQFEGQTKTKLGNSDARAAVDKAFSEAFSKFLLENPSV 240 Query: 368 AKIVVGKIIDAARAREA 384 + +V K A +AR A Sbjct: 241 GRKIVEKGQLAEKARIA 257 >UniRef50_A0BK44 Chromosome undetermined scaffold_111, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0BK44_PARTE Length = 1196 Score = 263 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 69/332 (20%), Positives = 138/332 (41%), Gaps = 15/332 (4%) Query: 293 LNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQ 352 +N K K + + + ++ ++ +P F SQTK+ L + K + Sbjct: 1 MNHIKKKYKEMK----NIKPFQVKSFIKIFLNCQIVNPAFDSQTKETLTTKAQKFGSTFE 56 Query: 353 MNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKG-ALDLAGLPGKLADCQ 411 ++E + +++ ++ +I A++R + +++++ +K L D Sbjct: 57 VSEKFLDEIIKKTE----IIDNVILQAKSRLNKQLSKQLSAKKQQRLLGIDKLEDANDAG 112 Query: 412 ERDPALSELYLVEGDSAGGSAKQGR---NRKNQAILPLKGKILNVEKARFDKMLSSQEVA 468 ++ L L L EGDSA A G R + PL+GK+LNV A ++ + E+ Sbjct: 113 TKNADLCTLILTEGDSAKSLAMAGIEIVGRDRFGVFPLRGKLLNVRDASIQMIMKNAEIE 172 Query: 469 TLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVE-RGHV 527 L+ +G ++ N LRY SI+IMTD D DG HI+ L++ F + P + + +G + Sbjct: 173 QLVKIMGLQFNKNYENTKSLRYGSIMIMTDQDHDGHHIKGLIINFIEKFWPSLFKMKGFL 232 Query: 528 YIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEY 587 P+ KV KGK+ ++ + + ++ S Sbjct: 233 KQFVTPIIKVTKGKEFHSFFSIGEYKKFIAENPREDYKVKYYKGLGTSTDSEAQQYFSNL 292 Query: 588 NATQKMINRMERRYPKAMLKELIYQPTLTEAD 619 +K+ ++ + +L++ T + Sbjct: 293 TLHRKVFTYSDQTDSDYI--DLVFSKTKADQR 322 >UniRef50_Q0QCK3 ParE (Fragment) n=163 Tax=cellular organisms RepID=Q0QCK3_ECOLX Length = 251 Score = 261 bits (667), Expect = 8e-68, Method: Composition-based stats. Identities = 101/257 (39%), Positives = 148/257 (57%), Gaps = 6/257 (2%) Query: 292 TLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQ 351 + + + + V + +D + V+SVK+ DP+F+ QTK++L S + + V Sbjct: 1 AMREFCEYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSG 59 Query: 352 QMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQ 411 + + +L +N A+++ I +A+ R RA + RK LPGKLADC Sbjct: 60 VVKDAFILWLNQNVQAAELLAEMAISSAQRRM---RAAKKVVRKKLTSGPALPGKLADCT 116 Query: 412 ERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLI 471 +D +EL+LVEGDSAGGSAKQ R+R+ QAI+PLKGKILN + D++L+SQEV + Sbjct: 117 AQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 176 Query: 472 TALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQ 531 A+G I D + +LRY I I+ DAD DG HI TLL F + +V+ GHVY+A Sbjct: 177 VAIG--IDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 234 Query: 532 PPLYKVKKGKQEQYIKD 548 PPLY++ GK+ Y Sbjct: 235 PPLYRIDLGKEVYYALT 251 >UniRef50_A3SXB5 DNA topoisomerase IV subunit B n=1 Tax=Sulfitobacter sp. NAS-14.1 RepID=A3SXB5_9RHOB Length = 308 Score = 251 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 102/246 (41%), Positives = 143/246 (58%), Gaps = 8/246 (3%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 + YD+SSI+VL+ ++ VR RPGMYIG DD LHHMV E++DN++DEA+AGH I + Sbjct: 12 AKEYDASSIQVLEDMEHVRLRPGMYIGGKDD-RALHHMVAEIIDNSMDEAVAGHATWIEL 70 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEE-GVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 +H + V+V+D+GRGIPT HP++ SA E+I L+AGGKF +SY+ SGGLHGVG Sbjct: 71 ELHENGHVTVRDNGRGIPTDPHPKDPSKSALEIIFCTLNAGGKFSGDSYETSGGLHGVGS 130 Query: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTG-ETEKTGTMVRFWPSLETFTNV 179 SVVNALS L + + R ++ + G+PQ L G + GT V F P E F + Sbjct: 131 SVVNALSDHLRVEVARNRELFAMEFSRGIPQGKLEKIGAAPNRRGTAVTFHPDAEIFGPL 190 Query: 180 TEFEYEILAKRLRELSFLNSGVSIRL----RDKRDGKEDHFHYEGGIKAFVEYLNKNKTP 235 + + L R ++L SGV IR +D +E FH+ GG+ ++ K T Sbjct: 191 -KLKPARLFTMARSKAYLFSGVEIRWKCGQQDGDTPQEATFHFPGGLSDYLNETLKGSTT 249 Query: 236 IHPNIF 241 Sbjct: 250 TPSIPL 255 >UniRef50_A8NKQ4 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8NKQ4_COPC7 Length = 919 Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats. Identities = 70/339 (20%), Positives = 128/339 (37%), Gaps = 23/339 (6%) Query: 335 QTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRR 394 QTK+ L K + +++ + + + +V +++ A+ + + R + Sbjct: 357 QTKELLTLPSSKFGSKPTISDEFIKKVAHSG-----IVDNVLNWAKFKADQQMKRADGTK 411 Query: 395 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRN---RKNQAILPLKGKIL 451 + L + R L L EGDSA A G R N + PL+GK+L Sbjct: 412 RSRLLGLAKLSDANNAGTRHAQDCTLILTEGDSAKALAIAGLGVVGRDNFGVFPLRGKLL 471 Query: 452 NVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLL 511 NV +A D+++ ++E+ + +G +D N LRY ++IMTD D DGSHI+ L++ Sbjct: 472 NVREACHDQVMKNEEIQNIKKIMGLQHNKDYTNTSSLRYGRVMIMTDQDHDGSHIKGLII 531 Query: 512 TFFYRQMPEIVERG-HVYIAQPPL-YKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTN 569 F P +++ + PL VKKG + + +Q+ Sbjct: 532 NFLDHLYPSLLKIPDFLVEFVTPLSGYVKKGNKVKDFFTIPEYEQWLEETPDARKWESKY 591 Query: 570 ASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRW 629 G + +K EY + + + RR + +L + + + Sbjct: 592 -----YKGFSEDKGAREYFSKMEKRFHLHRRKKGTVNIDLAFSKKKADE--------RKE 638 Query: 630 VNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRT 668 + + + N E LF VR+ Sbjct: 639 WLRQYKPGTFLDHRLEEIPYSEFINKELILFSMANNVRS 677 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 54/236 (22%), Positives = 102/236 (43%), Gaps = 30/236 (12%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTD----------------------DGTGLHHMVFEVV 44 S + L L+ + KRP YIG+ + G +V E++ Sbjct: 106 SDHLMTLTQLEHILKRPDSYIGNIEIISTPMWTYDSETIRMVHREVKYVPGFFKIVDEIL 165 Query: 45 DNAIDEALAGH-CKEIIVTIH-ADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGG 102 NA D + + +TI + ++SV ++GRGIP IH +E + E+I L Sbjct: 166 VNAADNKINDPSMDTLKITIDVEEGTISVYNNGRGIPIEIHSKEKMYIPEMIFGHLLTST 225 Query: 103 KFDDNSYKVSGGLHGVGVSVVNALSQKLELV--IQREGKIHRQIYEHGVPQAPLAVTGET 160 +DD+ K++GG +G G + N S + + + + ++Q + + + A + Sbjct: 226 NYDDDEKKLTGGRNGYGAKLANIYSLEFTVETADKNTSQKYKQTWTDNMSKCGKAKITKN 285 Query: 161 EK--TGTMVRFWPSLETFT--NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK 212 + T + F P L+ F ++ E +L +R+ +++ V + L D+R K Sbjct: 286 TRGEEYTRITFRPDLKRFGMNSINEDTVNLLKRRVFDMADTVKDVKVLLNDERLKK 341 >UniRef50_A7K5X7 DNA gyrase subunit B n=5 Tax=Gammaproteobacteria RepID=A7K5X7_VIBSE Length = 246 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 149/246 (60%), Positives = 181/246 (73%) Query: 559 IALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEA 618 +ALD A+LH NA APALAGEALEKLV +YNA K+ RM RRYP A++ ELIY P LT Sbjct: 1 MALDNASLHVNAEAPALAGEALEKLVQQYNAGIKLAERMSRRYPSALVNELIYTPRLTPE 60 Query: 619 DLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLD 678 D V W L+ +LN KE SQ+ ++V + E L P + VRTHGV ++ + Sbjct: 61 QCHDASVVEAWTKQLIEQLNAKEVGASQYSYEVEQHEELGLNLPKIVVRTHGVTHEHAIS 120 Query: 679 HEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQR 738 +F+ EY ++ L E L GLLEE A+I+RGER PVASF +ALDWLVKES RGLS QR Sbjct: 121 IDFLNSKEYGKLADLSEALDGLLEEGAYIKRGERTMPVASFAEALDWLVKESMRGLSRQR 180 Query: 739 YKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALK 798 YKGLGEMNP+QLWETTMDPE+RRM++VT++DA+ ADQLFTTLMGD VEPRR FIEENALK Sbjct: 181 YKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADQLFTTLMGDQVEPRRNFIEENALK 240 Query: 799 AANIDI 804 AN+D+ Sbjct: 241 VANLDV 246 >UniRef50_Q1CZR7 DNA gyrase, B subunit, truncated n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1CZR7_MYXXD Length = 361 Score = 230 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 94/367 (25%), Positives = 164/367 (44%), Gaps = 29/367 (7%) Query: 16 LDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDG 75 ++ VRKRPGMY GD + GLHH+V+ ++D A +EA G C+++++ + D S+++ Sbjct: 11 VENVRKRPGMYCGDVGE-YGLHHLVYFLLDVAYEEARRGECRDVVLEVGGDGSIALFCTS 69 Query: 76 RGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQ 135 R + + T G+ + + L V ALS + ++ I Sbjct: 70 RTVTAE--------NLVRVATGAGFLGRPPGDGWGWDSML-----VVSLALSSRYQVDIW 116 Query: 136 REGKIHRQIYEHGVPQ------APLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILAK 189 +G+ R + EHG PQ P+ + + G V F P F V F+ L++ Sbjct: 117 ADGRQWRVMGEHGHPQGEGAAVTPMEPMPVSAERGVRVHFVPDATIF-EVLAFDRARLSR 175 Query: 190 RLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDG 249 R EL+ L G+ + D + G+ +H GG+ + L + + +HP F DG Sbjct: 176 RCNELAALAPGLRVSFADLQRGERTLWHLPGGVAQWAHVLTEARPQLHPEPVVFDFTWDG 235 Query: 250 IGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVS 309 + V+ ALQW + + F N + G H+ G A+ L S + + + Sbjct: 236 LRVQCALQWCEDEDSTLLSFANAVRTVRHGAHVKGVTQALRGAL------AKLSGETRGA 289 Query: 310 ATGDDAREGLIAVVSVKVPDPK--FSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTD 367 +GL A+V+V P + F+ TK+ L ++ A+ +Q+ L E L E+P Sbjct: 290 FPWARVAQGLTAIVAVSGPRRQMAFAGPTKELLAIPGLEEAIRKQLQPLFIELLREHPVT 349 Query: 368 AKIVVGK 374 ++ + Sbjct: 350 PALLARR 356 >UniRef50_UPI00016C4A69 DNA gyrase subunit B n=2 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4A69 Length = 294 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 94/317 (29%), Positives = 137/317 (43%), Gaps = 30/317 (9%) Query: 1 MSNSYD-----SSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 55 M Y+ + + V ++A+R RP M++G T GLH ++FE+V++A+ Sbjct: 1 MKCGYNTSDPIEADLPVEAPMEAIRLRPRMFLGGTG-SRGLHQLLFELVNDALGPLSGDP 59 Query: 56 CKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115 + V + AD V + DD P V A M+ LHA Sbjct: 60 AGVVRVALDADGFVEISDDC-------SPPLNVEAVFSRMSGLHAADS------------ 100 Query: 116 HGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLET 175 SV ALS++L +R G + + + G A G + G VRF P Sbjct: 101 ----RSVACALSEELTARARRSGAVPQCTFRRGQLHAETQFGGPPDDCGLTVRFRPDPAI 156 Query: 176 FTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTP 235 F F+ +I+ RL++ +FLNSGV I D+ G ED F Y GI +V++LN N+TP Sbjct: 157 FG-AARFDPDIIRNRLQQCAFLNSGVRIAFADESSGTEDVFEYPDGIADYVKWLNTNRTP 215 Query: 236 IHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNA 295 +H + F E G+ EV LQW F N R GGTH G RAA+ Sbjct: 216 VHAEVIAFDGEAGGVRYEVGLQWCADADALPVSFANGYCTRLGGTHTTGVRAAVKTWCAR 275 Query: 296 YMDKEGYSKKAKVSATG 312 + +KK+ Sbjct: 276 CCVRSLRAKKSSAMTRW 292 >UniRef50_C0F8C8 DNA gyrase, B subunit (Fragment) n=1 Tax=Wolbachia endosymbiont of Muscidifurax uniraptor RepID=C0F8C8_9RICK Length = 288 Score = 225 bits (574), Expect = 5e-57, Method: Composition-based stats. Identities = 110/306 (35%), Positives = 173/306 (56%), Gaps = 18/306 (5%) Query: 427 SAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPD 486 SAGG+AKQGRNRK QA+L L+GKILNVE+ D++ SS E+ +LITA+G GIG + ++ + Sbjct: 1 SAGGTAKQGRNRKTQAVLALRGKILNVERVSLDRIFSSAEIGSLITAIGAGIGSEHFDIE 60 Query: 487 KLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYI 546 K RYH IIIMTDADVDGSHIRTL+LTFF+R M E++E+G++YIAQPPLYKV K ++ YI Sbjct: 61 KARYHKIIIMTDADVDGSHIRTLILTFFFRHMREVIEKGYLYIAQPPLYKVTKNAKDTYI 120 Query: 547 KDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAML 606 KDDE ++Y I+ A+ TL + A+ L K V N ++ +R P+ +L Sbjct: 121 KDDETFEEYIINSAVKRLTLSSTATEFNDLRLILNKCVGISNISKNY----DREIPQNLL 176 Query: 607 KELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRV 666 + L+ +D + +++ + SE W+ ++ ++ + + Sbjct: 177 ESLLILSKKNALSSAD--EILKYLKLMYSEYT--------WEVEIKDEEKEIHISKLFQ- 225 Query: 667 RTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWL 726 G+ Y + G + + I +L + + L D+F++ E + S + Sbjct: 226 ---GLADKYIFALSMLEGKDMQNILSLLDGISNLFNGDSFLKSQETEIRITSPSTLAKII 282 Query: 727 VKESRR 732 + ++ Sbjct: 283 MDYGKK 288 >UniRef50_D2J2Q7 DNA gyrase subunit B (Fragment) n=7 Tax=Corynebacterineae RepID=D2J2Q7_9ACTO Length = 249 Score = 223 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 98/249 (39%), Positives = 132/249 (53%), Gaps = 38/249 (15%) Query: 126 LSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYE 185 LS K+EL IQ +G Q Y + P A L T KTGT VRFWP E FT T F E Sbjct: 1 LSTKVELEIQNDGFNWEQTYTYATPGA-LEKGTPTRKTGTTVRFWPDPEIFTETTRFNAE 59 Query: 186 ILAKRLRELSFLNSGVSIRLRDKR------------------------------------ 209 +A+RL+E++FLN G++I L D+R Sbjct: 60 TVARRLQEMAFLNKGLTITLTDQRPQAIEPPGDADGDEESGTTEAAEVVKSEEEKAAAAA 119 Query: 210 DGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCF 269 K +HY G+ ++++LN+ K IH + F+ + G VEVA+QWN G+ E+++ F Sbjct: 120 KPKTRTYHYPDGLVDYIKHLNRTKQSIHTTVVGFTGQGTGHEVEVAMQWNAGYSESVHTF 179 Query: 270 TNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSK-KAKVSATGDDAREGLIAVVSVKVP 328 N I +GGTH GFRAA+T T+N Y + K K + +GDD REGL AV+SVKV Sbjct: 180 ANTINTHEGGTHEEGFRAALTLTVNKYAVDKKLIKDKKEDRLSGDDIREGLAAVISVKVG 239 Query: 329 DPKFSSQTK 337 DP+F QTK Sbjct: 240 DPQFEGQTK 248 >UniRef50_Q2SFQ7 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SFQ7_HAHCH Length = 325 Score = 222 bits (565), Expect = 5e-56, Method: Composition-based stats. Identities = 89/352 (25%), Positives = 157/352 (44%), Gaps = 31/352 (8%) Query: 13 LKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQ 72 L DAVRKRPGMY GD D ++H+++E+V N +D LAG + V + + + V Sbjct: 2 LSFKDAVRKRPGMYFGDID-HNAVNHVIYELVANVVDLFLAGRATTLKVDVS-ECEIIVI 59 Query: 73 DDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLEL 132 DDG G P + + + E +T H DD++ + G+G++ VNA+S+KL + Sbjct: 60 DDGPGFPFPV-EDSAHNLVERYLTHHHDKPTADDHAPHIHVLGGGLGLAAVNAVSEKLTI 118 Query: 133 VIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLR 192 RQ++ G APL +G+ ++F F N ++ L K + Sbjct: 119 ESSNGAWRWRQVFGKGDVLAPLESFRYDGPSGSSIKFTLDPSVFHNRLPDFFQ-LRKAMF 177 Query: 193 ELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGV 252 EL+ L SG+ + +R + +G ++ + K +P +F F + + +G Sbjct: 178 ELAHLYSGLIVEFDGERYVSK-----QGLMELAYLMWSGPKWAFNPKMFRFKGQTEDVGF 232 Query: 253 EVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATG 312 EVA + G + N + G H+ G R A+ G++ Sbjct: 233 EVAAIGDGGSPPCYKSWVNGCETEEHGAHVNGLRQALNYA--------GWAPD------- 277 Query: 313 DDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLEN 364 IA++S+ + DPKF+ K + + VKS + + + + L + ++ Sbjct: 278 -------IALISIVMHDPKFAGPVKSRFCNRRVKSLIAEALADPLKMFKSKS 322 >UniRef50_C1ZHM4 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZHM4_PLALI Length = 325 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 86/353 (24%), Positives = 148/353 (41%), Gaps = 37/353 (10%) Query: 14 KGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSV-SVQ 72 L+A+RKRP MY+G TD GLHH+ E++DNAID+ LA V +H + Sbjct: 4 TDLEAIRKRPAMYVGSTD-VNGLHHLFNELLDNAIDQYLANQAT--YVEVHTSGEILEFT 60 Query: 73 DDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNS-YKVSGGLHGVGVSVVNALSQKLE 131 DDG G+P S A+ +T + DN + G G+ ++ AL++ E Sbjct: 61 DDGPGLPFEKPGPHSGSLADYYLTHIRLDTPTADNHTPHIHLSGWGCGLRIITALTETCE 120 Query: 132 LVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILAKRL 191 + R +Q + G+ P + G T + GT R + F+ ++ + +RL Sbjct: 121 VTSSRNHLAWKQSFSRGISNGPPHIVGHTSERGTTFRLSIDRDLFSG--DWCQHRMNQRL 178 Query: 192 RELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPN-IFYFSTEKDGI 250 E + L G+ ++ + HF G+ + K +P+ I++F+ + Sbjct: 179 IEAAHLFPGLLVKSQG------LHFKTLRGLADLAANVAHEKNSPNPDRIWWFNAVFEDF 232 Query: 251 GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSA 310 ++ A+ D E F N + GTHL A+ R + A + Sbjct: 233 HLQAAIAGTDSETE-WKSFANGNLTIENGTHLT----ALQRVIEAC------------NL 275 Query: 311 TGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLE 363 A + V + +P+FS T+ KL E+ S + + + L ++ E Sbjct: 276 RPA------AAFIHVIISNPRFSGPTRSKLDVPEIISPIYEALYPSLKSFITE 322 >UniRef50_A6N6C7 DNA gyrase subunit B (Fragment) n=1 Tax=uncultured bacterium RepID=A6N6C7_9BACT Length = 353 Score = 215 bits (546), Expect = 8e-54, Method: Composition-based stats. Identities = 158/430 (36%), Positives = 213/430 (49%), Gaps = 88/430 (20%) Query: 92 EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQ---REGKIHRQIYEHG 148 EVIMTVLHAGGKF ++ G +V + ++ + Q R G + Sbjct: 1 EVIMTVLHAGGKFGRA---LNLLHPPQGADIVVSGDRRFDTTPQGGQRRGYLPVVDVGEY 57 Query: 149 VPQ-APLAVTGETEKTGT--MVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRL 205 PQ APL G + G + P ++ R+ + S VS R Sbjct: 58 CPQGAPLVQHGVCDVVGDVHLCVQLPKRGSYDQCNP----------RKEPYRESCVSERR 107 Query: 206 RDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQEN 265 D+ + F + EYL++ +T +HP +F+ EKDGI VEVA+QW + +QEN Sbjct: 108 IDR---AREQF-----TRTCPEYLHRTRTVLHPTVFHSVGEKDGITVEVAMQWKESYQEN 159 Query: 266 IYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSV 325 + CFTNNIPQRDGGTHL RAAM RTLN ++++ ++KAKV TG+D REG V+SV Sbjct: 160 VLCFTNNIPQRDGGTHLTALRAAMPRTLNHFIEENELARKAKVETTGEDMREGRTCVLSV 219 Query: 326 KVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAA 385 KVP PKFSSQTK+KLVSSEV+ AVE+ +++ + +LLE P +A+I+VGKII+AARAREAA Sbjct: 220 KVPPPKFSSQTKEKLVSSEVRPAVEEVVSDQMRSFLLEKPAEARIIVGKIIEAARAREAA 279 Query: 386 RRAREMTRRKGALDL-----AGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKN 440 RR R + R+ K+A C+E Sbjct: 280 RRGRSLPVRRRGETSLRGSLRSPKSKVAPCRE---------------------------- 311 Query: 441 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDAD 500 +LPL+ + A G D M+DAD Sbjct: 312 -GLLPLRS------------------TQRVCVAHWLRQGSRHAVHD---------MSDAD 343 Query: 501 VDGSHIRTLL 510 VDGSHIRTLL Sbjct: 344 VDGSHIRTLL 353 >UniRef50_B9PF30 Predicted protein n=6 Tax=cellular organisms RepID=B9PF30_POPTR Length = 252 Score = 214 bits (545), Expect = 9e-54, Method: Composition-based stats. Identities = 144/253 (56%), Positives = 197/253 (77%), Gaps = 1/253 (0%) Query: 552 MDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIY 611 M Q+++++AL+G++L+ N +APA+ G ALEKL+SEYN+ QKMI+ + YP+ +LK LIY Sbjct: 1 MQQFELNLALEGSSLYVNENAPAMNGIALEKLISEYNSVQKMISHLSFHYPEILLKSLIY 60 Query: 612 QPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGV 671 Q LT ++DE V W +LV+ L DK+ GS +K+ + N E++L+E ++ +RTHG+ Sbjct: 61 QKALTNEMMTDESAVDFWAKSLVNILTDKKISGSSYKYRIVFNNERHLYEVVIIIRTHGI 120 Query: 672 DTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESR 731 + +Y L+ EF+ G EY RI LG +L+GLLE+ A++ RGER+Q V+SFEQA++WL KESR Sbjct: 121 EKNYFLNFEFLNGTEYSRIVKLGNQLQGLLEKGAYVSRGERQQSVSSFEQAIEWLTKESR 180 Query: 732 RGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAF 791 RGL IQRYKGLGEMN +QL+ETTMDP R ML+V++KDA+AADQLFTTLMGD VEPRR F Sbjct: 181 RGLIIQRYKGLGEMNSDQLFETTMDPNKRTMLKVSIKDAVAADQLFTTLMGDEVEPRREF 240 Query: 792 IEENALKAANIDI 804 IE NAL+A N+DI Sbjct: 241 IEMNALRA-NLDI 252 >UniRef50_UPI0001C4799C UPI0001C4799C related cluster n=1 Tax=unknown RepID=UPI0001C4799C Length = 184 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 102/208 (49%), Positives = 129/208 (62%), Gaps = 27/208 (12%) Query: 15 GLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDD 74 GL+AVRKRPGMYIG T + GLHH+V+E+VDN+IDEALAG+ +I V I DN + V D+ Sbjct: 1 GLEAVRKRPGMYIGSTSE-RGLHHLVWEIVDNSIDEALAGYANQIEVVIEKDNWIKVTDN 59 Query: 75 GRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVI 134 GRGIP I + G A EVI+T SVVNALSQ LE+ + Sbjct: 60 GRGIPVDIQEKMGRPAVEVILT-----------------------SSVVNALSQDLEVYV 96 Query: 135 QREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLREL 194 R I+ Q Y+ GVPQ L G T+KTGT++RF E FT T + YE L +R+REL Sbjct: 97 HRNETIYHQAYKKGVPQFDLKEVGTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIREL 156 Query: 195 SFLNSGVSIRLRDKRDGK---EDHFHYE 219 +FLN G+ I LRD+RD + ED +HYE Sbjct: 157 AFLNKGIQITLRDERDEENVREDSYHYE 184 >UniRef50_B1PJM5 DNA gyrase subunit B (Fragment) n=1 Tax=Micromonospora tulbaghiae RepID=B1PJM5_9ACTO Length = 215 Score = 209 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 88/218 (40%), Positives = 132/218 (60%), Gaps = 10/218 (4%) Query: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTE 181 VVNALS ++ + I ++G + Q H P+ PL ET++TG+ V FWP + F + Sbjct: 1 VVNALSPRMGVEIHKDGFVWGQRGNHSKPR-PLEKGEETDRTGSAVCFWPDPD-FFETVD 58 Query: 182 FEYEILAKRLRELSFLNSGVSIRLRDKRDGK-------EDHFHYEGGIKAFVEYLNKNKT 234 F++ + +RL+E++FL G++I L D+R + E FHYEGGI F LN +K+ Sbjct: 59 FDFHTIYRRLQEMAFLTRGLTIHLLDERVPEDEDGKTREVTFHYEGGIGDFGRRLNASKS 118 Query: 235 PIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLN 294 PIH F E+ G+ VE+A+Q N+ + E++Y F NNI +GGTH GFRAA+T +N Sbjct: 119 PIHKTGGEFGAEETGMSVEIAMQGNESYGESVYTFANNIDTHEGGTHEEGFRAALTSVVN 178 Query: 295 AYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKF 332 Y ++ K +G+D REGL A++SVK+ DP+F Sbjct: 179 RYGAEKKLLK-GDERLSGEDIREGLAAIISVKLTDPQF 215 >UniRef50_Q6Y3A9 Gyrase B (Fragment) n=1 Tax=Pelobacter acidigallici RepID=Q6Y3A9_PELAC Length = 277 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 103/195 (52%), Positives = 129/195 (66%), Gaps = 2/195 (1%) Query: 120 VSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNV 179 VSVVNALS+ LEL I+ + K+ I G APLA TG T K GT V F P E Sbjct: 1 VSVVNALSKWLELEIRGDEKLFPPILPGGGXVAPLAETGATRKRGTKVTFMP-EEEIFET 59 Query: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKR-DGKEDHFHYEGGIKAFVEYLNKNKTPIHP 238 TEF +++L++RLREL+FLN+GV I + D R D K F+YEGGI +FVEYLN+NK +HP Sbjct: 60 TEFSFDVLSQRLRELAFLNAGVRIGISDMRVDNKSHEFYYEGGINSFVEYLNRNKIAVHP 119 Query: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 YF EK G+ EV++Q+ND F E I+ F NNI +GGTHL GF+AA+TRT+NAY Sbjct: 120 KPIYFRGEKGGVETEVSMQYNDSFDEKIFSFANNINTHEGGTHLVGFKAALTRTMNAYAA 179 Query: 299 KEGYSKKAKVSATGD 313 KK KVS +GD Sbjct: 180 ANNLLKKEKVSISGD 194 >UniRef50_C5Z2Y6 Putative uncharacterized protein Sb10g016438 (Fragment) n=3 Tax=Sorghum bicolor RepID=C5Z2Y6_SORBI Length = 396 Score = 205 bits (522), Expect = 5e-51, Method: Composition-based stats. Identities = 73/337 (21%), Positives = 124/337 (36%), Gaps = 51/337 (15%) Query: 269 FTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVP 328 F N + +GG +TR + ++ K +K K +D + L A ++ Sbjct: 3 FVNGV-VIEGGVQFD----TITRHVEEHL-KSSIKRKMKNVQNIEDVKSHLWAFINADY- 55 Query: 329 DPKFSSQTKDKLVSSEV-KSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARR 387 P F + + ++ S + K + E LA L E + + K DA RA Sbjct: 56 -PFFYGEPQLQVAHSFIFKEIFRCALKETLAWALKEEDENIEANQTKFQDATRA------ 108 Query: 388 AREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLK 447 D L EGDSA A +R +L LK Sbjct: 109 -----------------------GGVDSQKCTLIFTEGDSAKDLALGSVHRDYFGVLALK 145 Query: 448 GKILNVEKARFDKMLSSQEVATLITALGCGIGRDE---YNPDKLRYHSIIIMTDADVDGS 504 GK+LNV A K+L ++E+ + +G + + LRY +++MTD D DG Sbjct: 146 GKLLNVRDASLKKILDNEEINNMRKIIGLDYKKHYNDEKDLKDLRYGKVMVMTDQDPDGF 205 Query: 505 HIRTLLLTFFYRQMPEIVE---RGHVYIAQPPLYK----VKKGKQEQYIKDDEAMDQYQI 557 HI+ L++ F+ P +++ + + PL K + QY KD + +Y + Sbjct: 206 HIKGLIINLFHVFWPSLLKIKSKSFLCDLVTPLVKGLGTRTLKEGMQYFKDIDIHQKYFV 265 Query: 558 SIALDGATLHTNASAPAL---AGEALEKLVSEYNATQ 591 + + A + E + + Q Sbjct: 266 WVNEEDDKAIKTAFSKHKVEERKEWIYNFLHNCKVAQ 302 >UniRef50_A9CRV4 DNA gyrase subunit B (Fragment) n=2 Tax=Bradyrhizobium RepID=A9CRV4_9BRAD Length = 272 Score = 194 bits (494), Expect = 9e-48, Method: Composition-based stats. Identities = 110/169 (65%), Positives = 124/169 (73%), Gaps = 2/169 (1%) Query: 41 FEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHA 100 +EVVDNAIDEALAGH ++VT++ADNSV+V DDGRGIP IH EGVSAAEVIMT LHA Sbjct: 1 YEVVDNAIDEALAGHASRVLVTLNADNSVTVYDDGRGIPVDIHKGEGVSAAEVIMTQLHA 60 Query: 101 GGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGE- 159 GGKFD NSYKVSGGLHGVGVSVVNALS KL L I + K H + HG APL V G+ Sbjct: 61 GGKFDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWGDDKEHYIEFAHGDAVAPLKVVGDA 120 Query: 160 TEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDK 208 K GT V F S ETF N+ E+++ L RLREL+FLNSGV I L D Sbjct: 121 PGKRGTEVTFLASPETFKNI-EYDFATLEHRLRELAFLNSGVHIVLSDH 168 >UniRef50_Q27537 Chromosome instability 4 n=3 Tax=Chromadorea RepID=Q27537_CAEEL Length = 842 Score = 193 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 56/279 (20%), Positives = 100/279 (35%), Gaps = 11/279 (3%) Query: 388 AREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGR---NRKNQAIL 444 + R+ L D ++ L L EGDSA A G R + Sbjct: 27 QKCPKRKTSKLKGIPKLEDANDAGTKNSQQCTLILTEGDSAKTLAVSGLSVVGRDKYGVF 86 Query: 445 PLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEY---NPDKLRYHSIIIMTDADV 501 P + K+LNV +++ S EV +I LG + + LRY ++IM + D Sbjct: 87 PFRRKLLNVCDLNVNQIADSAEVNAIIKILGLQYTKKYETEDDFKTLRYGKLLIMANHDS 146 Query: 502 DGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQIS-IA 560 DGS + LLL FF+R P + +R V P+ K +GK+E +++++ Sbjct: 147 DGSQFKGLLLNFFHRFWPALFKRDFVEDFITPIAKATEGKEEVSFYSLPEYSEWRMNTDN 206 Query: 561 LDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTL---TE 617 T+ L + +K S+ ++ + + + + T+ Sbjct: 207 WKSYTIKYYNGLGTLTSKEAKKCFSDMVRH-RIRFKYNGADDDKAVNMAFSKKKIEARTD 265 Query: 618 ADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAE 656 + Q + ++E + N E Sbjct: 266 YLMKLMQDKNQRKQQGLAEECLYNKETRFVTLKDFFNYE 304 >UniRef50_B0YNR7 DNA gyrase subunit B (Fragment) n=7 Tax=Gammaproteobacteria RepID=B0YNR7_9ENTR Length = 205 Score = 191 bits (486), Expect = 7e-47, Method: Composition-based stats. Identities = 123/204 (60%), Positives = 163/204 (79%) Query: 575 LAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALV 634 L+G +LEKLV ++ + QK +NRMERRYP+A+L ++IYQPTL E DL D + + W+ LV Sbjct: 2 LSGTSLEKLVHQHYSVQKTLNRMERRYPRALLNQMIYQPTLQEGDLKDSEKLQAWMTLLV 61 Query: 635 SELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLG 694 +LN+KE GS + F ++ N E +++P++++RTHGVDTDY LD FI EY++IC G Sbjct: 62 DKLNEKETQGSHYIFVLNKNTENEIYDPVLKIRTHGVDTDYLLDLHFIQSSEYQKICHWG 121 Query: 695 EKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETT 754 ++LR LLE AF++RGE++ + SFE+ALDWL+KESRRGL+IQRYKGLGEMNP QLWETT Sbjct: 122 DQLRDLLEPGAFLQRGEKKTCINSFEEALDWLMKESRRGLAIQRYKGLGEMNPGQLWETT 181 Query: 755 MDPESRRMLRVTVKDAIAADQLFT 778 MDPE+RRML+V +KDAIAADQLFT Sbjct: 182 MDPETRRMLQVRIKDAIAADQLFT 205 >UniRef50_A7C3L4 Topoisomerase B subunit n=1 Tax=Beggiatoa sp. PS RepID=A7C3L4_9GAMM Length = 337 Score = 191 bits (485), Expect = 9e-47, Method: Composition-based stats. Identities = 89/354 (25%), Positives = 150/354 (42%), Gaps = 35/354 (9%) Query: 13 LKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQ 72 L+ AVRKRPGMY GD + G G + +V+E+V NA+D LAG K+I +N++ + Sbjct: 11 LELRQAVRKRPGMYFGDIESG-GANTVVYEIVANAVDIFLAGLAKKIN-IEVNNNNIIIS 68 Query: 73 DDGRGIPTGI--HPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKL 130 DDG G P + ++ E +T H D+++ + G+G++V+NA S+KL Sbjct: 69 DDGPGFPFFKASPQDTSINLVEYYLTNFHNSPTADNHAPHIHILGRGLGLAVLNAASKKL 128 Query: 131 ELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILAKR 190 + K+ Q + G+ +P TG+ V F N +E L K Sbjct: 129 AIESSDGEKLWTQNFGEGMVLSPATHESGNFPTGSKVSITLDPMVFDNHGPNSFE-LRKI 187 Query: 191 LRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKA--FVEYLNKNKTPIHPNIFYFSTEKD 248 E+ L G+SI +++ F+ G+ ++ P +F F +K Sbjct: 188 FFEVVHLYPGLSIEF------EKECFYSNNGLVDLGYILLKKSASYMGMPKMFRFHYQKK 241 Query: 249 GIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKV 308 GI +VA + + N + G+H G +A+ K K Sbjct: 242 GIEFQVAALGDSKEGTEFRSWVNGCASVENGSHAKGLSSAL------------RLNKWKP 289 Query: 309 SATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLL 362 A++ V + DPKF+ +D L EV +E+++ + +L Sbjct: 290 EI----------ALIHVIMHDPKFAGPCRDALQMPEVLKVIEEKLTPEIKAFLN 333 >UniRef50_D1AIT2 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AIT2_SEBTE Length = 226 Score = 188 bits (476), Expect = 9e-46, Method: Composition-based stats. Identities = 84/232 (36%), Positives = 136/232 (58%), Gaps = 11/232 (4%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 MS +D+ SI VL ++ +RK+P M+IG GL ++V+E++DN ++EAL G C I Sbjct: 1 MSEIFDAKSIAVLGIMEGIRKKPEMFIGSV-SAEGLCNLVWEIIDNCVNEALEGFCNTIK 59 Query: 61 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 V + +N + V D+GRG+P + + G S EVI+T + G+ YK+S + G+ Sbjct: 60 VRLLKNNIIEVSDNGRGLPVDFYEKAGKSKLEVILTGKYIRGELTGGIYKLSRKKYKGGL 119 Query: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK--TGTMVRFWPSLETFTN 178 VN LS+ LE V+ ++GK+ Q Y GVP + TGE + GT++RF E F Sbjct: 120 VSVNGLSETLEAVVIKDGKVWYQKYHKGVPSGDIKKTGEKSEYIHGTVIRFRADREIFGE 179 Query: 179 VTEFEYEILAKRLRELSFLNSGVSIRLRDKRD---GKEDHFHYEGGIKAFVE 227 + E++YEIL +L+E+ G+ + L D+R+ GK + F++ G I+ F++ Sbjct: 180 L-EYDYEILLAKLKEI----RGIKVILCDERNEAAGKTESFYFNGEIREFLK 226 >UniRef50_B9XLD1 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit-like protein n=1 Tax=bacterium Ellin514 RepID=B9XLD1_9BACT Length = 353 Score = 182 bits (461), Expect = 6e-44, Method: Composition-based stats. Identities = 85/372 (22%), Positives = 147/372 (39%), Gaps = 39/372 (10%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 M+ YDSS I + + VRKRPGMY G + + +M+ +++ +D I Sbjct: 1 MAQ-YDSSHIAKMTFKEGVRKRPGMYFG-LNGPAAIPYMLRYIINGVLDTTPDTFTGPIR 58 Query: 61 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 +TI NS ++ D + + P + L + K SY Sbjct: 59 ITI---NSGTIITDCPSLSAPLFPPAELEQWF----KLGSDMKPYHQSY----------A 101 Query: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVT 180 S V A S L + R P + ++ T + F P F +T Sbjct: 102 SFVAAASDLFTLESCDGTQRARYEDHDDAPITRI-LSPATSPPFLRITFRPFAPVFGTIT 160 Query: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFV---EYLNKNKTPIH 237 E ++ LR+ S L +G++ R E H +Y+ G+ F+ +YL+ P H Sbjct: 161 TAELCKISGMLRDFSLLQAGLATSNRADLLQHEIHHYYQDGLINFLFEADYLHHPHPPSH 220 Query: 238 PNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMT------- 290 P+ F ++ + VE L++ +G+ + + N + GTHL G A++ Sbjct: 221 PDPLSFKATENKMTVEGHLRFTNGYTHQVRTWVNRQST-ESGTHLEGLGLALSGIFPNPS 279 Query: 291 ---RTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKS 347 R + + Y K KV +IA + +++P+P FS T+ L + E + Sbjct: 280 RDFRDMAINTNFANYRNKTKVIVP-----HAMIAALHLRLPEPHFSGATRYNLSNPEARD 334 Query: 348 AVEQQMNELLAE 359 V + L + Sbjct: 335 FVHRAAAATLKQ 346 >UniRef50_A8V367 Gyrase B (Fragment) n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V367_9AQUI Length = 277 Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 87/287 (30%), Positives = 142/287 (49%), Gaps = 19/287 (6%) Query: 463 SSQEVATLITALGCGIG------RDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYR 516 S+ EV ++I A+G GIG + ++ KLRYH II+M DADVDGSHI TLLLT FYR Sbjct: 1 SNDEVRSIINAIGTGIGLPTESDEEGFDISKLRYHKIILMADADVDGSHITTLLLTLFYR 60 Query: 517 QMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALA 576 P+++E G +YIAQPPLYK+KKG+ Y+KDDE + + I ALD + L Sbjct: 61 YFPQLIENGFLYIAQPPLYKLKKGRTNIYVKDDEELARIIIDFALDEIEVVD----KKLT 116 Query: 577 GEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSE 636 L+ LV + + + + +R ++ LI L+E DL E+ V+ L + Sbjct: 117 KSQLKNLVKKAKEYKDLRESLIKRRDAKIIDALI-SLKLSEDDLLYEEKTKEIVDKLKNV 175 Query: 637 LNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEK 696 + + E + + + F+ + + + + +D +T YRRI + E+ Sbjct: 176 ITEYEIY-------YEKDQIEGDFDIVFDKKENFGVSTLRVDTGLLTSYAYRRILEIEEE 228 Query: 697 LRGLLEE-DAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGL 742 + ++ E ++ + E+ D + + G+ + K L Sbjct: 229 FKQIVGEFPVNLKIKGESVNINHIEEFFDKVWETGMHGVKYKDIKVL 275 >UniRef50_C0SNC2 DNA gyrase subunit B (Fragment) n=87 Tax=Lactobacillales RepID=C0SNC2_9STRE Length = 153 Score = 173 bits (437), Expect = 4e-41, Method: Composition-based stats. Identities = 69/153 (45%), Positives = 95/153 (62%), Gaps = 3/153 (1%) Query: 126 LSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYE 185 LS +L++ + + G+++ Q Y G L V GET++TGT V F P E FT +EF++ Sbjct: 1 LSTQLDVRVHKNGQVYFQEYRRGQVVDDLKVIGETDRTGTTVHFTPDPEIFTETSEFDFA 60 Query: 186 ILAKRLRELSFLNSGVSIRLRDKRDGKE---DHFHYEGGIKAFVEYLNKNKTPIHPNIFY 242 LAKR++EL+FLN G+ I + DKRDG E +HYEGGI ++VE+LN K I Y Sbjct: 61 KLAKRVQELAFLNKGLRISITDKRDGNEANDKEYHYEGGIVSYVEFLNDTKEVIFNQPIY 120 Query: 243 FSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQ 275 E +GI VEVA+Q+ GF EN+ F NNI Sbjct: 121 TDGEMEGIAVEVAMQYTTGFHENVMSFANNIHT 153 >UniRef50_UPI0001788AA3 transcriptional regulator, ArsR family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788AA3 Length = 372 Score = 169 bits (427), Expect = 6e-40, Method: Composition-based stats. Identities = 66/202 (32%), Positives = 111/202 (54%), Gaps = 8/202 (3%) Query: 6 DSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHA 65 D+S + R GMY G + +H +++ VV+N+I E +G+ +I + +H Sbjct: 176 DASDYLEMS---ETRNNAGMYFGPSHG-FDIHQLLWAVVENSILEHTSGYGDQIGIFLHE 231 Query: 66 DNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNA 125 D SV+V D+GRGIP P V + I+T +H + V G G+ ++VVNA Sbjct: 232 DGSVTVTDNGRGIPVQALPNSDVPVVQSILTDVHRFNN--SAHFLVPGAEKGISIAVVNA 289 Query: 126 LSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYE 185 LS++L + I+R+G I+RQ Y HG+PQ L G T++TGT V F P E F+ + FE++ Sbjct: 290 LSKQLSVEIRRDGNIYRQEYRHGIPQTGLLTVGLTQETGTSVTFKPETELFS--SAFEFD 347 Query: 186 ILAKRLRELSFLNSGVSIRLRD 207 + + ++ +++ +R+ Sbjct: 348 RILEHKDAIAADYPALALTIRN 369 >UniRef50_UPI0001698B4B DNA gyrase, B subunit n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001698B4B Length = 199 Score = 165 bits (418), Expect = 5e-39, Method: Composition-based stats. Identities = 101/157 (64%), Positives = 125/157 (79%), Gaps = 1/157 (0%) Query: 187 LAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTE 246 LAKRLRELSFLNSG I LR++ GKED F Y+GGI AFVE+LN+NKTPIH +F+FST+ Sbjct: 39 LAKRLRELSFLNSGARIILREESSGKEDVFEYKGGILAFVEHLNRNKTPIHKKVFHFSTD 98 Query: 247 KDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKA 306 K+ +GVEVALQWN+ +QENI+C+TNNIPQRDGG+HLAGFRAA+TRTLN Y++KEG KK Sbjct: 99 KNDVGVEVALQWNESYQENIFCYTNNIPQRDGGSHLAGFRAALTRTLNQYIEKEGVLKKH 158 Query: 307 KVSATGDDAREGLIA-VVSVKVPDPKFSSQTKDKLVS 342 KV+ +GDDA+ L + +K F + KDKLVS Sbjct: 159 KVNTSGDDAKGRLDSQFYQLKCLIQSFHLRRKDKLVS 195 >UniRef50_Q9FYE9 DNA gyrase subunit B-like protein n=3 Tax=Arabidopsis thaliana RepID=Q9FYE9_ARATH Length = 257 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 65/222 (29%), Positives = 115/222 (51%), Gaps = 6/222 (2%) Query: 201 VSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWN- 259 +++ L + + + Y G+ FV +LN +K P+H ++ F E +G + +ALQW Sbjct: 21 ITVSLEMEDNDPNKEYLYAKGLSEFVTWLNADKKPLH-DVLGFRKEINGTTINIALQWCV 79 Query: 260 DGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGL 319 DG+ I + N I DGGT++ G +A++TRTLN+ ++K + + T + EGL Sbjct: 80 DGYSNKILGYANGIRTMDGGTYIDGVKASITRTLNSLVEKSKLVEDKDIIFTEEHVMEGL 139 Query: 320 IAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAA 379 +VSV VP P+F QT+ +L + V+ V+Q + E L E +P + ++ K +A Sbjct: 140 TCIVSVIVPKPEFEGQTQ-RLGNPNVREIVDQSVQECLMESFELHPDVFESIMSKSYNAY 198 Query: 380 RAREAARRAREMTRRKGAL---DLAGLPGKLADCQERDPALS 418 + A +RAR++ + + +P KL + +S Sbjct: 199 KTDLAVKRARDVYSSESVAMVCAIESIPMKLTNSSSETSGMS 240 >UniRef50_C7UEA1 Predicted protein n=22 Tax=Enterococcus faecalis RepID=C7UEA1_ENTFA Length = 342 Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats. Identities = 66/353 (18%), Positives = 147/353 (41%), Gaps = 35/353 (9%) Query: 14 KGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQD 73 + ++ ++KRP +IG T GL +++ + ++ ++ + + +I + + Sbjct: 14 EFIERIQKRPEAFIGTTGLV-GLENLLVQTINGLLEFFIEKNQGKIAIQLSR-------- 64 Query: 74 DGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELV 133 + I + S ++ +V + +SV+ A S+++ + Sbjct: 65 --QQISFQVS-----STRPLVF-----------EQKQVDLEPPFLYLSVLQAFSKQVGIS 106 Query: 134 IQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRE 193 I +E + IY G + L + E + V FWP + F Y + ++ ++ Sbjct: 107 IDQEKQRTIFIYHQGQLKKRLLLPIEETQERIEVLFWPDTQIFG-TESLSYMRVLQQCQQ 165 Query: 194 LSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVE 253 ++ LN G+ I L + + +++ +Y G+ ++ + N + + + V+ Sbjct: 166 IAMLNPGLKILLTQE-EEQKNLCYYPKGLSNYL-FEKDNPLTRKAAPIIQAKQTELALVQ 223 Query: 254 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 313 L N Q F N GGTH GF + N +++++ YS +S T D Sbjct: 224 FILSKNHAPQ-VQKTFVNGHYPSLGGTHYEGFLDGVVAAFNQFLEEQHYS----LSVTAD 278 Query: 314 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPT 366 V+++ +P P+++ TK L ++E+ V++ + + L Y +P Sbjct: 279 SFLAEFDFVLAITIPKPRYTDATKTILRNTELYEVVKEVVFDELQHYFQRHPK 331 >UniRef50_Q070G1 GyrB-like ATPase domain protein n=1 Tax=Crocodilepox virus RepID=Q070G1_CPRV Length = 1017 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 98/612 (16%), Positives = 183/612 (29%), Gaps = 121/612 (19%) Query: 9 SIKVLKGLDAVRKRPGMYIGDTDDGT-------------GLHHMVFEVVDNAIDEALAGH 55 + ++ V P Y+G T T G + E V NAID L Sbjct: 15 EYRSMRDEAHVLANPSEYLGVTCTVTRGTIFNKRIRYHAGAAKLCDEAVSNAIDHCLITG 74 Query: 56 CKEIIVTIHADNSVSVQDDGRGIPTG--IHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSG 113 + V S+ V + R +P + E G ++ + G + + Sbjct: 75 SDAVNVD-MRGVSICVANRSR-VPVRGALDGEPGHVIPRALLRQMRTSGNYVTR--RSVS 130 Query: 114 GLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKT-GTMV---RF 169 G HG G+ +++ +++LEL + + E G + + + ++ GT RF Sbjct: 131 GRHGHGLKLIHLFAERLELDVSDGDLAYSYRREGGDVEESVLDSPLRDERLGTRFFRLRF 190 Query: 170 WPSLETF--------TNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGG 221 P + E+ L + + L+ L G++I R + Sbjct: 191 SPDPARLNAEREELAEGLREYVVSRLCEYVFYLAELGRGIAIHFNGDRLPYVAPW----- 245 Query: 222 IKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTH 281 F+ + K + T DG+GV + + N + Sbjct: 246 ---FLRSRHVTKRFSVTYVPDGRTRFDGLGVAYVSRERNSKG----ALVNGARVK----- 293 Query: 282 LAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLV 341 + + R + + D R + + V+ F+SQ K + Sbjct: 294 ----KLQLMRVVADAI----------AETRPDLRRCHVSIFLLVECAGITFTSQEKVAVD 339 Query: 342 SSEVKSAVEQQMNELLAEYLLENPT------DAKIVVGKIIDAARAREAARRAREMTRRK 395 + + + L P+ A V + AARA + R RE R+ Sbjct: 340 GRF--EIPGRLFSAADLDPLSRPPSPQSATAAAAETVEADVAAARALGSPARVREKGSRE 397 Query: 396 GA-----------------LDLAGLPGKLADCQERDPALSELY--LVEGDSAGGSAKQGR 436 A A P E + LV + Sbjct: 398 RAGAGGSDGDEEEEDDDARDGDATAPVSGEAAATTAERAGERFELLVIREPKNVPLLSAA 457 Query: 437 NRKNQAI---LPLKGKILNVEKARFDKML--SSQEVATLITALGCGIGRDEYNPDKLRYH 491 R+ A+ LP + D+ + ++ + +G + + H Sbjct: 458 GRRVYAVTGDLP---------DSTVDRAAARENADLRAIARVMGVDLAGRNQHSTLC--H 506 Query: 492 SIIIMTDADVDGSHIRTLLLTFF---YRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKD 548 SI++ T H LLL P ++ V +A+ P + K +Y+ Sbjct: 507 SIVVFT-------HDAPLLLGLLKAVEAFWPTML--ARVCVAELPKLRCCK----RYLYA 553 Query: 549 DEAMDQYQISIA 560 D+ + + Sbjct: 554 DDEPESHADHEG 565 >UniRef50_C3RSA4 DNA gyrase subunit B (Fragment) n=3 Tax=Lactobacillales RepID=C3RSA4_9ENTE Length = 156 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 65/156 (41%), Positives = 93/156 (59%), Gaps = 7/156 (4%) Query: 127 SQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-----KTGTMVRFWPSLETFTNVTE 181 S+KLE+ + + GK++ Q ++ G A L V GETE GT V F P E F TE Sbjct: 1 SEKLEVKVFKNGKVYYQDFKRGKINADLKVIGETELHGTEVHGTEVHFVPDPEIFNETTE 60 Query: 182 FEYEILAKRLRELSFLNSGVSIRLRDKR--DGKEDHFHYEGGIKAFVEYLNKNKTPIHPN 239 F ++ LA R+REL+FLN G+ I + D+R + + +HYEGGIK++VE+LN NK + P Sbjct: 61 FNFDKLATRIRELAFLNRGLHISIEDRRPEEPLFNQYHYEGGIKSYVEHLNANKEVLFPE 120 Query: 240 IFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQ 275 Y ++ I VEV++Q+ D F N+ F NNI Sbjct: 121 PIYLEGQQQDINVEVSIQYTDSFHTNLMTFANNIHT 156 >UniRef50_C7P9T7 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit-like protein n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7P9T7_CHIPD Length = 352 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 75/369 (20%), Positives = 151/369 (40%), Gaps = 38/369 (10%) Query: 16 LDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDG 75 ++++R RP MY+G + G+ ++ ++ + +++ + +T + D+ VSV Sbjct: 10 IESIRNRPVMYLGSVN-SYGIRRLMKMLITDYLEDVTG--LSTVEITFNPDSFVSVVL-- 64 Query: 76 RGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQ 135 G+P E++ V ++K ++++ A+S+ + + I Sbjct: 65 SGMPVD----------ELLHEVAFLQEISSGKNFK---------IALLIAISRFVLVRIV 105 Query: 136 REGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELS 195 G+IH G+ + + + E G V F + F + + Y + L++L+ Sbjct: 106 VNGEIHSITSHAGIYEVEM-HPADGEPNGIKVDFQLEEQIFKH-NQVAYIPMNIMLQQLA 163 Query: 196 FLNSGVSIRLRDKRDG-KEDHFHYEGGIKA-FVEYLNKNK--TPIHPNIFYFSTEKDGIG 251 +LN G+ I D R + + F++ GI F + L+K+ + T +G Sbjct: 164 YLNPGLKIISVDNRGELQRNVFYFRTGISELFNDLLDKHDYGSMNAWLPIELKTAINGYI 223 Query: 252 VEVALQWNDGFQ----ENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAK 307 V L+++ + I F NN + G+ + G + +KEG K Sbjct: 224 FHVILRYHHIYTVYPAPYIRSFANNEATKGHGSLVEGVLKGLEDAFVEVGEKEGVELKVN 283 Query: 308 VSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTD 367 G L+ +VK + ++KDKL +K V + + + +YL N D Sbjct: 284 KKRIGKM----LVLFAAVKGEPLTYDGRSKDKLDMPGLKKDVRKFVKRGVLKYLESNSGD 339 Query: 368 AKIVVGKII 376 + V+ K I Sbjct: 340 RRRVLEKFI 348 >UniRef50_Q6Y3B0 Gyrase B (Fragment) n=1 Tax=Geobacter pelophilus RepID=Q6Y3B0_9DELT Length = 299 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 94/222 (42%), Positives = 123/222 (55%), Gaps = 28/222 (12%) Query: 274 PQRDGGTH-LAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKF 332 Q GG H L + ++TRT+N Y +K + G D R + P+ Sbjct: 91 HQHPGGGHALHRLKGSLTRTMNTYATANNLFEKRE----GGDLR---------RRPEGGA 137 Query: 333 SSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVV----------GKIIDAARAR 382 + +++ V+ A + Q EL E + +P + + + R Sbjct: 138 HRGHFGEDLAAAVRGADQDQAGELGGERVRRDPDEREARHLSGRKPGHGQEDPGEIDRCG 197 Query: 383 EAARRAREMTR----RKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNR 438 R A+E K L++ LPGKLADCQE+DPAL EL+LVEGDSAGGSAKQGR+R Sbjct: 198 PGPRGAQERRANSPAAKVRLEVGTLPGKLADCQEKDPALCELFLVEGDSAGGSAKQGRDR 257 Query: 439 KNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR 480 K QAILPLKGKILNVEKARFDKML+SQE+ TLI+ALG IG+ Sbjct: 258 KYQAILPLKGKILNVEKARFDKMLASQEIRTLISALGTSIGK 299 >UniRef50_Q44273 DNA gyrase subunit B (Fragments) n=5 Tax=Acinetobacter RepID=GYRB_ACIGA Length = 216 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 97/150 (64%), Positives = 107/150 (71%), Gaps = 10/150 (6%) Query: 355 ELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTR----------RKGALDLAGLP 404 E ++ + A+ + A R R R K ALD+AGLP Sbjct: 67 ETFSQTIFNVDILARRLRELSFLNAGVRIVLRDERVALEHIFDLEVGLSEKSALDIAGLP 126 Query: 405 GKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 464 GKLADCQE+DPALSELYLVEGDSAGGSAKQGRNRK QAILPLKGKILNVE+ARFDKM+SS Sbjct: 127 GKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMISS 186 Query: 465 QEVATLITALGCGIGRDEYNPDKLRYHSII 494 QEV TLITALGCGIGR+EYNPDKLRYH II Sbjct: 187 QEVGTLITALGCGIGREEYNPDKLRYHKII 216 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 75/117 (64%), Positives = 84/117 (71%), Gaps = 1/117 (0%) Query: 108 SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMV 167 SYKVSGGLHGVGVSVVNALS KLEL I R G IH+Q Y+HG P PL V G+ E TGT V Sbjct: 1 SYKVSGGLHGVGVSVVNALSSKLELTIHRAGHIHQQEYKHGDPVYPLKVIGDIETTGTTV 60 Query: 168 RFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKA 224 RFWPS ETF+ F +ILA+RLRELSFLN+GV I LRD+R E F E G+ Sbjct: 61 RFWPSAETFSQTI-FNVDILARRLRELSFLNAGVRIVLRDERVALEHIFDLEVGLSE 116 >UniRef50_Q2B8E8 DNA gyrase, B subunit n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B8E8_9BACI Length = 350 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 52/193 (26%), Positives = 98/193 (50%), Gaps = 7/193 (3%) Query: 14 KGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQD 73 L+A+R+ P T+ + ++F ++ +A+ E AG I + +H+D S +V D Sbjct: 165 SALEALREEPEKMDMKTEGDFDANILLFSLIHHAVQEHEAGFASRINIYLHSDGSATVSD 224 Query: 74 DGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELV 133 DGRGIP + +S + ++T + D + K G+ V+ +NA S+KL ++ Sbjct: 225 DGRGIPVSLLEGTSMSRLQDVLTDVEKNYLEDSLNEKS-----GIPVAAINAFSEKLTVL 279 Query: 134 IQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRE 193 I+++ I+ Q Y++G + G+T +TGT + F P + F + F L ++ E Sbjct: 280 IKKDTMIYSQEYQYGKALTRVVPIGKTNETGTSITFLPDKKVFK--SGFNAAKLEGKINE 337 Query: 194 LSFLNSGVSIRLR 206 L L+ + + L+ Sbjct: 338 LQGLHPDLLVSLQ 350 >UniRef50_UPI0001908742 DNA topoisomerase IV subunit B n=1 Tax=Rhizobium etli IE4771 RepID=UPI0001908742 Length = 200 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 60/105 (57%), Positives = 75/105 (71%), Gaps = 2/105 (1%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 S+ Y +SSI+VL+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DEA+AGH I V Sbjct: 97 SDEYGASSIRVLEGLEPVRMRPGMYIGGTDE-KALHHLFAEVIDNAMDEAVAGHANFIEV 155 Query: 62 TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFD 105 + ++V D+GRGIP HP+ G S EVIMT LHAGGKFD Sbjct: 156 HLDLQGYLTVTDNGRGIPVENHPQVPGKSTLEVIMTKLHAGGKFD 200 >UniRef50_D2PP74 GCN5-related N-acetyltransferase n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PP74_9ACTO Length = 337 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 49/170 (28%), Positives = 77/170 (45%), Gaps = 7/170 (4%) Query: 9 SIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNS 68 S+ + ++ +R+ P G G+ H+ EV+ +DEA+ G ++ V +HAD S Sbjct: 149 SVADTEHVEQIRQDPAYRAG------GVLHLALEVIAYPLDEAVEGTTTQVRVVLHADGS 202 Query: 69 VSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQ 128 ++V D+GRG + GV + IM D +S ++ GL G+SV ALS+ Sbjct: 203 IAVSDNGRGTAVRF-DDGGVPMVKPIMATRDLRFFADPDSPRLPDGLPRAGMSVPIALSE 261 Query: 129 KLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTN 178 R + YEHG+P+ L TGT + F P F Sbjct: 262 WAVHTNHRTEGSWTRRYEHGMPRGALTAVPADSSTGTTIHFRPDRTLFGE 311 >UniRef50_UPI0000D546F8 DNA gyrase, B subunit n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D546F8 Length = 204 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 51/206 (24%), Positives = 93/206 (45%), Gaps = 12/206 (5%) Query: 606 LKELIYQPTLTEADLSDEQTVTRWVNAL------VSELNDKEQHGSQWKFDVHTNAEQNL 659 ++I + + + + + N L N K S ++ E+ Sbjct: 4 FDQVINTGLFLQDFMPGKVEKSTFKNFLSNLNDIYKSENIKFTFQSMISNELVFLQEKEG 63 Query: 660 FEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIE-RGERRQPVAS 718 + I+++ + L + + + + + + Sbjct: 64 YNKIIKL-----PLEKLLHLREFISPDSLALYNKMGFAKSIDASFGIAKLSTKENFSCYG 118 Query: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 + + L + S++G SI RYKGLGEMNPEQLWETT+D +R++L+V ++D + A++ Sbjct: 119 LVEFFNTLFEMSKKGQSISRYKGLGEMNPEQLWETTLDRANRKLLQVKLEDQVNAERQLI 178 Query: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 LMGD V R+ FI++N++K AN+DI Sbjct: 179 MLMGDDVTDRKNFIQDNSIKVANLDI 204 >UniRef50_A0MYL3 DNA gyrase B (Fragment) n=14 Tax=Streptomyces RepID=A0MYL3_9ACTO Length = 138 Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 56/137 (40%), Positives = 80/137 (58%), Gaps = 22/137 (16%) Query: 115 LHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLE 174 LHGVGVSVVNALS ++ + ++ +G Q Y+ GVP APLA T++TGT V FW Sbjct: 1 LHGVGVSVVNALSTRVAVEVKTDGHRWTQDYKFGVPTAPLARNEATDETGTSVTFWADGG 60 Query: 175 TFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDH------------------- 215 F TE+ +E L++R +E++FLN G++I+L D+R+ + Sbjct: 61 IF-ETTEYSFETLSRRFQEMAFLNKGLTIKLTDERESAKATAGADVAEVAEIAEAEQVRT 119 Query: 216 --FHYEGGIKAFVEYLN 230 +HYEGGI FV+YLN Sbjct: 120 VSYHYEGGIVDFVKYLN 136 >UniRef50_A5M9T1 DNA gyrase subunit B n=2 Tax=Streptococcus pneumoniae RepID=A5M9T1_STRPN Length = 128 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 50/92 (54%), Positives = 64/92 (69%), Gaps = 1/92 (1%) Query: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 + YD+S I+VL+GL+AVR RPGMYIG T GLHH+V+E+VDN+IDEALAG I V Sbjct: 10 AQDYDASQIQVLEGLEAVRMRPGMYIGSTSK-EGLHHLVWEIVDNSIDEALAGFASHIQV 68 Query: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEV 93 I D+S++V DDGRGIP I ++ V Sbjct: 69 FIEPDDSITVVDDGRGIPVDIQEKQAVLLLRP 100 >UniRef50_Q9F8M6 DNA gyrase subunit B (Fragment) n=1 Tax=Carboxydothermus hydrogenoformans RepID=Q9F8M6_CARHY Length = 123 Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 55/118 (46%), Positives = 75/118 (63%), Gaps = 1/118 (0%) Query: 197 LNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVAL 256 ++S L+D+R KE+ F + GGIK +++YLNKNK P+H I YF EKD + VEVAL Sbjct: 6 VSSSTREILKDERINKEEIFEHSGGIKDYLKYLNKNKEPLH-KIIYFEKEKDEVVVEVAL 64 Query: 257 QWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDD 314 Q+ + F ENI FTNNI +GGTH GF+ A+TR +N Y K K+ +S G+ Sbjct: 65 QYCNSFSENILSFTNNINTTEGGTHEIGFKTALTRVINDYAKKYNLIKENNLSLQGER 122 >UniRef50_A9ZPQ0 DNA gyrase subunit B (Fragment) n=5 Tax=Corynebacterium RepID=A9ZPQ0_9CORY Length = 183 Score = 122 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 59/185 (31%), Positives = 86/185 (46%), Gaps = 53/185 (28%) Query: 126 LSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYE 185 LS ++E I+REGK Q +++ VP L G TGT +RFW E F TEF+Y+ Sbjct: 1 LSTRVEAEIKREGKHWYQNFQNAVPD-DLVEGGNARGTGTKIRFWADPEIF-ETTEFDYD 58 Query: 186 ILAKRLRELSFLNSGVSIRLRDKRDG---------------------------------- 211 +A+RL+E++FLN G++I L D+R Sbjct: 59 TIARRLQEMAFLNKGLTIELIDERVTQAQIELEEIAEAESGEARGDETSFDDIPDAGDTF 118 Query: 212 -----------------KEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEV 254 K+ FHY G+ +V++LNK+K+ IHP I F + + VEV Sbjct: 119 NEEDDSTNVITADKKRRKKVTFHYPDGLTDYVKFLNKSKSTIHPTIVSFEAKGEEHEVEV 178 Query: 255 ALQWN 259 ALQW+ Sbjct: 179 ALQWS 183 >UniRef50_Q23CP4 DNA topoisomerase 2 n=3 Tax=Tetrahymena thermophila RepID=Q23CP4_TETTH Length = 784 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 60/328 (18%), Positives = 129/328 (39%), Gaps = 41/328 (12%) Query: 174 ETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVE-YLNKN 232 + + + E E EI+ K + G+ I +D E F +E + LN Sbjct: 82 QIYLDFDEIEGEIVLKTV------GKGIPIEKQDNIFIPELIFSHERTSSNYQNTNLNDP 135 Query: 233 K------------TPIHPNIFYFSTEKDGI-----GVEVALQWNDGFQENIYCFTNNIPQ 275 K T + F T+ D + E + + Q++I F N +PQ Sbjct: 136 KLTGGKNGYGAKLTNVLSEYFEVETKYDNLIFKQLHYEGNTKHSQQLQKDIISFVNGLPQ 195 Query: 276 RDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSAT---GDDAREGLIAVVSVKVPDPKF 332 +GGTH+ + + + + + ++ G R+ + + S+ V P + Sbjct: 196 -NGGTHVNFINQIIKQ--DQLIKNLNVQDQDELEVMKQLGKQYRQNVFIIFSLLVHQPSY 252 Query: 333 SSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMT 392 +SQ+KD+L +++ ++ + + + + ++ ++ + I ++ + ++ Sbjct: 253 TSQSKDQLKTNKKDWFDTIELEKYIQQQIQQSSLLQELKIE--IQQQTKKQQVLKQKDQI 310 Query: 393 RRKGALDLAGLPGKLADCQERDPALSELYL--VEGDSAGGSAKQGRN---RKNQAILPLK 447 ++ KL D + +E L EGDSA + G ++ PLK Sbjct: 311 KKMN----INSVKKLQDAIKIRDRRTECSLLCAEGDSAMSFIRSGLTEQQKQIYGRFPLK 366 Query: 448 GKILNVEKARFDKMLSSQEVATLITALG 475 GK++NV ++ ++ ++ L +L Sbjct: 367 GKLMNVNSKTDRQIGENEILSQLQRSLN 394 Score = 98.7 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 42/204 (20%), Positives = 75/204 (36%), Gaps = 43/204 (21%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGD-------------------------TDDGTGLHHMVF 41 + K +K VR+ MYIG GL ++ Sbjct: 2 QNQYKQMKFELHVRQCADMYIGSIQPEEIMTPIYSKNQENQITLEYKKVKIIPGLLTVIG 61 Query: 42 EVVDNAID--EALAGHCKEIIVTIHAD---NSVSVQDDGRGIPTGIHPEEGVSAAEVIMT 96 E++ NA D K I + + D + ++ G+GIP ++ + E+I + Sbjct: 62 EILTNARDVMFQQRKQKKGIQIYLDFDEIEGEIVLKTVGKGIPIEK--QDNIFIPELIFS 119 Query: 97 VLHAGGKFDD---NSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAP 153 + + N K++GG +G G + N LS+ E+ + + I +Q++ G + Sbjct: 120 HERTSSNYQNTNLNDPKLTGGKNGYGAKLTNVLSEYFEVETKYDNLIFKQLHYEGNTKHS 179 Query: 154 LA--------VTGETEKTGTMVRF 169 V G + GT V F Sbjct: 180 QQLQKDIISFVNGLPQNGGTHVNF 203 >UniRef50_A6G3Y8 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G3Y8_9DELT Length = 272 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 63/304 (20%), Positives = 119/304 (39%), Gaps = 34/304 (11%) Query: 51 ALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYK 110 L+G C + V++ D+ V DDG G+ P E + E G + Sbjct: 2 HLSGRCSRLYVSLTHDH-FCVVDDGPGL----EPSEVLDQLETHHKKRTRQG----DRAH 52 Query: 111 VSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFW 170 G+G++++NAL+++LE ++R G++ R ++E V + + G + +GT +R W Sbjct: 53 AHVIGTGMGLAMINALARRLEFELRRAGEVRRWVFEGTVLVSENELVGACDDSGTTLRVW 112 Query: 171 PSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLN 230 P E L+ L ++ +L + + L +R F E G+ A++ Sbjct: 113 PDASLMREPLPSRAE-LSAVLEKVHWLCPALRVELDGRR------FSGEAGLAAWIRRQP 165 Query: 231 KNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQ-ENIYCFTNNIPQRDGGTHLAGFRAAM 289 + G V +A W D F N G+H+ + Sbjct: 166 EWDGSPVET-LELVDGARGARVGLAWAWLDEPCVARQAAFVNLRETPR-GSHMDALLEGL 223 Query: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 + AR ++A+VSV + +P++ S T++ L E+ + + Sbjct: 224 AARY---------------GVSPAMARRRVLALVSVVLEEPRYDSPTREVLAQPELGAWI 268 Query: 350 EQQM 353 E + Sbjct: 269 EASL 272 >UniRef50_Q7UUI4 DNA gyrase subunit B n=1 Tax=Rhodopirellula baltica RepID=Q7UUI4_RHOBA Length = 243 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 7/136 (5%) Query: 415 PALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLI-TA 473 P +EL +VEGDSA S Q R+ Q++L L+GK +NV KA L ++ + T Sbjct: 28 PDQTELVIVEGDSAAKSVNQVRDTTRQSVLALQGKPMNVAKASRSVALRNEVLIRFASTL 87 Query: 474 LGCGIGRDEY------NPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHV 527 L + E D+ RY ++++ D D DG H L+L F R P++++ V Sbjct: 88 LDHKLSASEDWIEALRKADRCRYARLVVLMDPDADGIHCGVLVLGFLLRFAPQLLQERRV 147 Query: 528 YIAQPPLYKVKKGKQE 543 + +PP++ + Sbjct: 148 CVVRPPMFLFRIRGTT 163 >UniRef50_UPI00016B21F7 DNA gyrase subunit B n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B21F7 Length = 114 Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats. Identities = 45/85 (52%), Positives = 60/85 (70%), Gaps = 1/85 (1%) Query: 3 NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62 SYD S I+VL+GL+ VRKRPGMYIG T G+HH++ E+ DN+IDEA+AG+ ++ VT Sbjct: 31 QSYDGSQIQVLEGLEPVRKRPGMYIGSTGYD-GVHHLIKEIADNSIDEAIAGYATKVEVT 89 Query: 63 IHADNSVSVQDDGRGIPTGIHPEEG 87 + D + DDGRGIP HP+ G Sbjct: 90 LLEDGGARISDDGRGIPVDKHPKTG 114 >UniRef50_Q6E0M3 GyrB (Fragment) n=1 Tax=Bacillus thuringiensis RepID=Q6E0M3_BACTU Length = 116 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 47/104 (45%), Positives = 67/104 (64%) Query: 111 VSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFW 170 VSGGLHG G + +Q + + REGKIH Q YE G+P A L V G+T++TGT+ RF Sbjct: 1 VSGGLHGCGARLXCLXAQXSXVFVHREGKIHYQKYERGIPVADLKVIGDTDQTGTITRFK 60 Query: 171 PSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKED 214 P E F T ++++ LA R+REL+FLN + + + DKR+ K+ Sbjct: 61 PDPEIFQETTVYDFDTLATRMRELAFLNRNIKLTIEDKREHKQK 104 >UniRef50_B4V6F8 Putative uncharacterized protein n=3 Tax=Actinomycetales RepID=B4V6F8_9ACTO Length = 234 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 51/136 (37%), Positives = 64/136 (47%), Gaps = 1/136 (0%) Query: 35 GLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVI 94 GL H+V EVV A DEA + VT+HAD SVSV DDGRG T + G + + + Sbjct: 48 GLRHLVLEVVAYAADEAESRGGGRCTVTLHADGSVSVADDGRGTDTRF-DDSGRAVRKPV 106 Query: 95 MTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPL 154 M + G G+SVV ALS L +R G Q YE+GVP L Sbjct: 107 MATKDLRFFDHPEPPPLPDGHPRRGMSVVAALSAWLVHTNRRAGGAWTQRYEYGVPVTGL 166 Query: 155 AVTGETEKTGTMVRFW 170 + TGT+V F Sbjct: 167 TPVADDGTTGTLVHFR 182 >UniRef50_A0BK45 Chromosome undetermined scaffold_111, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0BK45_PARTE Length = 221 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 39/155 (25%), Positives = 61/155 (39%), Gaps = 27/155 (17%) Query: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDG-----------------------TGLH 37 MS + K++ ++ + RP YIG + GL+ Sbjct: 1 MSKN-VEDVYKMVSQVEHILLRPDTYIGSVEISDQELWICEDSDQISFKFEEFSYCQGLY 59 Query: 38 HMVFEVVDNAIDEALAGHCK-EIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMT 96 + E++ NA D I V+I D S+ V++ G GIP IH + + E+I Sbjct: 60 KIFDEILVNAADNYQRDKSTDRISVSIDND-SIMVENTGAGIPIQIHKQYNIYVPEMIFG 118 Query: 97 VLHAGGKFDDNSYKVSGGLHGVGVSVVN-ALSQKL 130 L +DD+ KV+GG +G G V S Sbjct: 119 RLLTSSNYDDSEQKVTGGRNGFGDKVSQTCFSSIF 153 >UniRef50_C8NCI6 DNA gyrase subunit B n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NCI6_9GAMM Length = 95 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 51/80 (63%), Positives = 63/80 (78%), Gaps = 1/80 (1%) Query: 725 WLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDA 784 L+ E ++ IQRYK LGEMN E+LWETT+DP RRML+V +KDA AD++FTTLMG+ Sbjct: 17 ALLAEGKKTYDIQRYKDLGEMNSEKLWETTLDPAVRRMLQVQLKDARLADEIFTTLMGEE 76 Query: 785 VEPRRAFIEENALKAANIDI 804 VEP RAFIE+NA +ANIDI Sbjct: 77 VEPHRAFIEDNA-NSANIDI 95 >UniRef50_B1PL25 DNA gyrase subunit B (Fragment) n=79 Tax=Bacteria RepID=B1PL25_ECOLX Length = 67 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 67/67 (100%), Positives = 67/67 (100%) Query: 409 DCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 468 DCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA Sbjct: 1 DCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 60 Query: 469 TLITALG 475 TLITALG Sbjct: 61 TLITALG 67 >UniRef50_UPI0000382E10 COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI0000382E10 Length = 122 Score = 102 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 40/81 (49%), Positives = 55/81 (67%), Gaps = 1/81 (1%) Query: 4 SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTI 63 YD+S+I+VL+GL+ VR+RPGMYIG TD+ LHH+ EV+DN++DEA+AGH I + + Sbjct: 43 GYDASAIEVLEGLEPVRRRPGMYIGGTDE-RALHHLFAEVIDNSMDEAVAGHASFIELEL 101 Query: 64 HADNSVSVQDDGRGIPTGIHP 84 + V D GIP HP Sbjct: 102 EDTVCLVVTDIVLGIPFDPHP 122 >UniRef50_A7T4X2 Predicted protein n=1 Tax=Nematostella vectensis RepID=A7T4X2_NEMVE Length = 513 Score = 99.4 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 79/218 (36%), Gaps = 7/218 (3%) Query: 585 SEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHG 644 SE+N ++ N + ++ ++ + L + E + NAL K Sbjct: 299 SEFNNATELSNVLGKKLYHYNFEKEMAIRDLVKVTWHYESPLVVHFNALPFSNISKIASE 358 Query: 645 SQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEED 704 + K + LF R+ T+ + + +I L+ L Sbjct: 359 QKVKAVLTGEGADELFLGYPRLLTNRYKKLINFPYTILN-----KIYNSFSPLKSYLNSS 413 Query: 705 AFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLR 764 +++ E+ +++ + I R+KGLGE++P + + R+ Sbjct: 414 VGSAGLSSLYELSAQEEEKQEAIQKLKGKPEITRFKGLGEISPNEFVHFIGN--DIRLDP 471 Query: 765 VTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANI 802 V + ++ +++ + MG R+ FI EN ++ Sbjct: 472 VMLDREMSVEEMLSFYMGKNTPDRQKFIIENLKVELDL 509 >UniRef50_A9AY53 Putative uncharacterized protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AY53_HERA2 Length = 329 Score = 97.5 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 57/306 (18%), Positives = 103/306 (33%), Gaps = 41/306 (13%) Query: 20 RKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIP 79 R+ GMY G D + ++ E VD + + H + I +TI + VQD Sbjct: 12 RENLGMYYGGNDGI-AIQRLLVEYVDFLL---KSQHAQRIQITILPEAGFVVQD----FE 63 Query: 80 TGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGK 139 I E + L +G +Q + + + G+ Sbjct: 64 ATIESNNFCGLPEDQLFHL-------------------LGA------AQYCTIDLHKAGQ 98 Query: 140 IHRQIYEHGVPQAP-LAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLN 198 ++ Y G P P L + G ++ + + F P+ F N T ++ L LR L+ L Sbjct: 99 HYQLSYS-GEPTVPALQLVGSSQASCRRIHFVPNHAIFINRTSSIHQFLGS-LRGLATLF 156 Query: 199 SGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQW 258 G I + D + Y G++ +++ L + Y E V++ L Sbjct: 157 RGCRIEVVDVMQATTNQLFYPNGLRDYLDGLIYHDLNPQ---RYLEFEGANEHVQIKLGL 213 Query: 259 NDGFQENIY-CFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDARE 317 G+ I C ++ G + L Y G +++ R+ Sbjct: 214 RFGYFSRIEQCLLRYKHVPFEPSYRRGILKGLASGLTTYAQAHGQITASQI-IEPAQIRD 272 Query: 318 GLIAVV 323 +V Sbjct: 273 FGCLLV 278 >UniRef50_Q401L8 DNA gyrase subunit B (Fragment) n=1 Tax=Mycobacterium kansasii RepID=Q401L8_MYCKA Length = 109 Score = 95.6 bits (236), Expect = 8e-18, Method: Composition-based stats. Identities = 37/84 (44%), Positives = 54/84 (64%), Gaps = 2/84 (2%) Query: 126 LSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYE 185 LS +LE+ I+R+G Q+YE P L T+KTGT VRFW F TE+++E Sbjct: 1 LSTRLEVEIKRDGYEWSQVYEKSEPMG-LKQGAPTKKTGTTVRFWADPNVF-ETTEYDFE 58 Query: 186 ILAKRLRELSFLNSGVSIRLRDKR 209 +A+RL+E++FLN G++I L D+R Sbjct: 59 TVARRLQEMAFLNKGLTINLTDQR 82 >UniRef50_A9DKM1 DNA gyrase subunit B n=1 Tax=Kordia algicida OT-1 RepID=A9DKM1_9FLAO Length = 208 Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 79/185 (42%), Gaps = 11/185 (5%) Query: 13 LKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQ 72 ++ + +R RP Y + + L + E+V AID+ I V ++ D SV+ Sbjct: 16 IEPYEHIRMRPQWYFTELFEEKKLDSLPLEIVKYAIDQNS----TIITVNLYTD-IFSVE 70 Query: 73 DDGRGIPTGIHP--EEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHG-VGVSVVNALSQK 129 + +G+ H E ++ AE ++ + + + GL+G VG+ +NA S+ Sbjct: 71 FN-KGMSLETHHRYEGDITKAEAVLLEI-SNYVSFRKKDDLQSGLNGSVGLIRINAASEW 128 Query: 130 LELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILAK 189 +L+ G+ ++ G + + +K T + P F ++ + + L + Sbjct: 129 CKLLTYSNGQKGEFHFKEGETETRTICGSDEKKNYTKITVKPDATIFPDL-KINPKTLQE 187 Query: 190 RLREL 194 ++ + Sbjct: 188 KIDNV 192 >UniRef50_Q9K2S8 GyrB protein (Fragment) n=2 Tax=Mycoplasma hominis RepID=Q9K2S8_MYCHO Length = 103 Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 4/103 (3%) Query: 130 LELVIQREGKIHRQIYEHG-VPQAPLAVTGETEK--TGTMVRFWPSLETFTNVTEFEYEI 186 E+ ++R+GK+H Q + +G +P PL V G + TGT ++F P F+++ Sbjct: 2 FEVWVKRDGKLHYQQFRNGGIPVKPLEVIGNVSEVETGTTIKFHPDYTIM-EKENFDFDT 60 Query: 187 LAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYL 229 + +++++LN G+ I + + F +EGG+ +V+ L Sbjct: 61 IIDHSKQIAYLNKGLKITVENVEKNIIKVFCFEGGLIDYVKEL 103 >UniRef50_D1S521 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit-like protein n=1 Tax=Micromonospora aurantiaca ATCC 27029 RepID=D1S521_9ACTO Length = 207 Score = 93.7 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 45/191 (23%), Positives = 66/191 (34%), Gaps = 36/191 (18%) Query: 1 MSN-SYDSSSIKVLKGLDAVRKRPGMYIG-DTDDGTGLHHMVFEVVDNAIDEA---LAGH 55 M+ Y + I+VL+ ++VR+RPGMY G DD ++ VV +A A A H Sbjct: 1 MTEPDYSLAKIRVLEFDESVRERPGMYFGVGRDDPRLATRVLCAVVGHAFHPATIVAASH 60 Query: 56 CKEIIVTIHADNSVSVQDD------GRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSY 109 +++ I+AD SV DD GRG+P L ++ + Sbjct: 61 TPDVVAEINADLIFSVTDDQADVLTGRGMPK-----------LGYHGSLLTSERWSSAAA 109 Query: 110 KVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRF 169 + + R G RQ P P A GT V F Sbjct: 110 AAVSSQ--------------TTVEVWRHGHGFRQRLVGLRPVEPPAEFAAPAGAGTRVAF 155 Query: 170 WPSLETFTNVT 180 F + Sbjct: 156 VLDPAYFGSAA 166 >UniRef50_B9ZDG0 DNA topoisomerase VI, B subunit n=1 Tax=Natrialba magadii ATCC 43099 RepID=B9ZDG0_NATMA Length = 824 Score = 92.5 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 52/247 (21%), Positives = 91/247 (36%), Gaps = 37/247 (14%) Query: 7 SSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEA-LAGHCKEIIVTIHA 65 + S + + + K M +G GL V E VDNA+D A AG +I V I Sbjct: 19 AESQQAISIAEFFEKNKHM-LGFDSGARGLVTAVKEAVDNALDAAEEAGILPDIYVEIQE 77 Query: 66 DN---SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122 + + V+D+G G+ P+ + L G +F ++ + S G G+G+S Sbjct: 78 EGDYYRLIVEDNGPGLTKESLPK--------VFGKLLYGSRF--HAREQSRGQQGIGISA 127 Query: 123 VNALSQKL-----ELVIQREGKIHRQIYE------HGVPQAPLAVTGETEK-TGTMVRFW 170 SQ ++ + EG Q +E P+ + T ++ GT + Sbjct: 128 AVLYSQLTSGKPAKITSRTEGTDEAQYFELIVDTDDNEPEISVEETTTWDRPHGTRI--- 184 Query: 171 PSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLN 230 E + L ++ + +N + LR + HF +E E Sbjct: 185 ---ELEMEANMRARQQLHNYIKHTAVVNPHARLELR----EPKAHFKFERATDQLPEETE 237 Query: 231 KNKTPIH 237 + + H Sbjct: 238 EIRPHPH 244 >UniRef50_Q070G7 GyrB-like ATPase domain protein n=1 Tax=Crocodilepox virus RepID=Q070G7_CPRV Length = 494 Score = 92.1 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 87/241 (36%), Gaps = 23/241 (9%) Query: 1 MSNSY------DSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAG 54 M++ Y + S+ + G V + P ++ G TG MV EVV+NAID Sbjct: 1 MTSEYCHVRPHVARSVFEIVGPTDVERHPTLFRGSVRCHTGACRMVREVVENAIDHCACV 60 Query: 55 HCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGG 114 + V + + V+V + G + ++T + G+ + + G Sbjct: 61 RAASVYVEVRR-HEVTVINTSSMTIKGTVDGVRCIVPQTMITEMFTLGRSEG---RAVSG 116 Query: 115 LHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-----TGTMVRF 169 HGVG+ +VNAL++++ + + E +G + V F Sbjct: 117 GHGVGLKIVNALAKRIRIEVSDETCSFIYSSRNGALGIGTVNSAPIRDARLGSNFFKVSF 176 Query: 170 WPSLETFT--------NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGG 221 + E F N+ ++ +L + + L + V + L ++ E Sbjct: 177 SIAGEAFNTTQAQACLNLEDYVAALLEECVFYLVEMQKDVRVYLNGQQVPYRGDMLMERY 236 Query: 222 I 222 Sbjct: 237 C 237 >UniRef50_D1Y3T2 Mismatch repair protein MutL n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y3T2_9BACT Length = 609 Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 58/273 (21%), Positives = 95/273 (34%), Gaps = 38/273 (13%) Query: 27 IGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNS--VSVQDDGRGIPTGIHP 84 I + +V E+++N++D I V + +SV+D+G GI P Sbjct: 15 IAAGEVIERPLSVVKELIENSLDAG----ATAIDVELEQGGKVLISVKDNGGGI----VP 66 Query: 85 EEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREG--KIHR 142 EE A E T + D + G G +S V A+S E+ +R + Sbjct: 67 EELPLAVEKHATSKISSE--ADLEAIATLGYRGEALSSVCAVS-HFEIYSRRPDLPEGAS 123 Query: 143 QIYEHGVPQAPLAVTGETEKTGTMVRFW------PSLETFTNVTEFEYEILAKRLRELSF 196 YE+G P VT + GT V P+ F E+ +++ +++ +F Sbjct: 124 LHYENGAP----RVTAVPLRPGTTVVVKDLFYNLPARRKFLKTAAAEFRRISRLVQDYAF 179 Query: 197 LNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVAL 256 V+ L ++ F G VE L P I ++E V + Sbjct: 180 AYPAVAFSLT---HDGKNVFKSSG--DGGVEKLLARMWGDEPEIRASASETATSSVRLWW 234 Query: 257 Q-WNDGFQENIYCFTNNIPQRD-------GGTH 281 Q + + F N D G H Sbjct: 235 QDLGPQSRFQLISFVNGRRVSDAVIRSAIHGFH 267 >UniRef50_B0C128 Putative uncharacterized protein n=1 Tax=Acaryochloris marina MBIC11017 RepID=B0C128_ACAM1 Length = 167 Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 61/155 (39%), Gaps = 4/155 (2%) Query: 40 VFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLH 99 + + + +AIDEA+ GHC + + + +V D G+P V A ++M+ Sbjct: 3 LLQSLCHAIDEAIDGHCSTVKILVKDFGAVIEYD--AGLPLHPVRNGQVPAVVILMSGPR 60 Query: 100 AGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGE 159 + +V +G++++NAL +V G+ ++ G Q P+ + Sbjct: 61 GCSNMKKH-IEVGSEYCELGIALLNALCCNFSVVTYANGQQATLSFKAGKLQHPVNLQKS 119 Query: 160 TEKTGTMVRFWPSLETFTNVTEFEYEILAKRLREL 194 T + F T F + + +E+ Sbjct: 120 EHADFTRMAFQLDDTILPRFT-FNEATIHQHAQEI 153 >UniRef50_Q2GFV4 DNA mismatch repair protein mutL n=9 Tax=Alphaproteobacteria RepID=MUTL_EHRCR Length = 673 Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 56/300 (18%), Positives = 99/300 (33%), Gaps = 37/300 (12%) Query: 19 VRKRPGM--YIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNS--VSVQDD 74 + P I + +V E+V+N+ID I +TI + V D+ Sbjct: 4 ILLDPRTINRIAAGEVIECPASVVKELVENSIDAK----ATAISITIERGGRNLIIVSDN 59 Query: 75 GRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKV-SGGLHGVGVSVVNALSQKLELV 133 G GI E+ D + KV S G G G++ + A+ + + Sbjct: 60 GIGI--------KKEDMEIAFARHATSKLPDGDLTKVRSLGFRGEGLTSIAAVGKVKMVS 111 Query: 134 IQRE-GKIHRQIYEHGVPQAPLAVTGETEKTGTMVR--F--WPSLETFTNVTEFEYEILA 188 R+ ++E G L + T VR F P+ F + E + + Sbjct: 112 KYRDSDTAWLMVFEGGEKTQELTPDALSCGTYIEVRDLFFATPNRLKFLRTEKAEVQSII 171 Query: 189 KRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVE------YLNKNKTPIHPNIFY 242 + +L+ +N V L + + I E KN P++ Sbjct: 172 DMMNKLAMVNHNVMFSLFVDNKQVFKYLTQQSNIDRLSEIKTLGMEFCKNSLPVN----V 227 Query: 243 FSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGY 302 + G + + G IY F N+ P D A+ + +++K+ Y Sbjct: 228 KEEQIQLSGYIGSPTLSRGKSSLIYTFVNSRPVYD-----NLLIGAVRYAYSDFIEKDKY 282 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.311 0.127 0.329 Lambda K H 0.267 0.0388 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,115,157,071 Number of Sequences: 3077464 Number of extensions: 172241796 Number of successful extensions: 498007 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 739 Number of HSP's successfully gapped in prelim test: 610 Number of HSP's that attempted gapping in prelim test: 492405 Number of HSP's gapped (non-prelim): 1993 length of query: 804 length of database: 1,040,396,356 effective HSP length: 137 effective length of query: 667 effective length of database: 618,783,788 effective search space: 412728786596 effective search space used: 412728786596 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.4 bits) S2: 97 (42.1 bits)