12/01/2012 01:05:24 : INFO  : Run start: Thu Jan 12 01:05:23 GMT 2012
12/01/2012 01:05:29 : INFO  : Initialised job
12/01/2012 01:05:31 : INFO  : Renaming log file 'phyre2_20120112_010523.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/70cc66561210888c/phyre_20120112_010523.log'
12/01/2012 01:05:33 : INFO  : Initialised job:
Sequence
>batch____
MSQTITQSRLRIDANFKRFVDEEVLPGTGLDAAAFWRNFDEIVHDLAPENRQLLAERDRI
QAALDEWHRSNPGPVKDKAAYKSFLRELGYLVPQPERVTVETTGIDSEITSQAGPQLVVP
AMNARYALNAANARWGSLYDALYGSDIIPQEGAMVSGYDPQRGEQVIAWVRRFLDESLPL
ENGSYQDVVAFKVVDKQLRIQLKNGKETTLRTPAQFVGYRGDAAAPTCILLKNNGLHIEL
QIDANGRIGKDDPAHINDVIVEAAISTILDCEDSVAAVDAEDKILLYRNLLGLMQGTLQE
KMEKNGRQIVRKLNDDRHYTAADGSEISLHGRSLLFIRNVGHLMTIPVIWDSEGNEIPEG
ILDGVMTGAIALYDLKVQKNSRTGSVYIVKPKMHGPQEVAFANKLFTRIETMLGMAPNTL
KMGIMDEERRTSLNLRSCIAQARNRVAFINTGFLDRTGDEMHSVMEAGPMLRKNQMKSTP
WIKAYERNNVLSGLFCGLRGKAQIGKGMWAMPDLMADMYSQKGDQLRAGANTAWVPSPTA
ATLHALHYHQTNVQSVQANIAQTEFNAEFEPLLDDLLTIPVAENANWSAQEIQQELDNNV
QGILGYVVRWVEQGIGCSKVPDIHNVALMEDRATLRISSQHIANWLRHGILTKEQVQASL
ENMAKVVDQQNAGDPAYRPMAGNFANSCAFKAASDLIFLGVKQPNGYTEPLLHAWRLREK
ESH

12/01/2012 01:05:34 : INFO  : Checked sequence
12/01/2012 01:05:37 : INFO  : Finding homologues with PSI-BLAST
12/01/2012 01:05:39 : INFO  : PSI-BLAST 3 iterations
12/01/2012 01:07:51 : INFO  : PSI-BLAST 5 iterations
12/01/2012 01:10:08 : INFO  : Finished PSI-BLAST
12/01/2012 01:10:09 : INFO  : Running Buildali to generate a3m file
12/01/2012 01:13:56 : INFO  : Converting to HMM
12/01/2012 01:13:58 : INFO  : Calibrating HMM
12/01/2012 01:14:18 : INFO  : Searching HMM database
12/01/2012 01:26:13 : INFO  : Finished buildali
12/01/2012 01:26:14 : INFO  : Predicting secondary structure
12/01/2012 01:26:22 : INFO  : Predicted secondary structure (PSI-Pred)
12/01/2012 01:26:23 : INFO  : Predicting Disordered regions
12/01/2012 01:26:27 : INFO  : Predicted Disorder (Disopred)
12/01/2012 01:26:29 : INFO  : Running memsat_svm check
12/01/2012 01:30:56 : INFO  : Running memsat_svm full
12/01/2012 01:39:07 : INFO  : Predicted Transmembrane (memsat_svm) ID '70cc66561210888c'
12/01/2012 01:39:10 : INFO  : Initialising fold library search
12/01/2012 01:39:13 : INFO  : Initialised search input
12/01/2012 01:39:16 : INFO  : Building Ensemble models
12/01/2012 01:39:19 : INFO  : Building hh.d1d8ca_.model.1.pdb
12/01/2012 01:39:35 : INFO  : Building d1d8ca_.1.pdb
12/01/2012 01:39:50 : INFO  : Building d1n8ia_.2.pdb
12/01/2012 01:40:07 : INFO  : Building c3cuzA_.3.pdb
12/01/2012 01:40:22 : INFO  : Building c3cuxA_.4.pdb
12/01/2012 01:40:36 : INFO  : Building c3pugA_.5.pdb
12/01/2012 01:40:51 : INFO  : Building c3r4iB_.6.pdb
12/01/2012 01:41:06 : INFO  : Building c1sgjB_.7.pdb
12/01/2012 01:41:20 : INFO  : Building c3qqwC_.8.pdb
12/01/2012 01:41:34 : INFO  : Building d1sgja_.9.pdb
12/01/2012 01:41:47 : INFO  : Building c1u5vA_.10.pdb
12/01/2012 01:42:01 : INFO  : Building d1u5ha_.11.pdb
12/01/2012 01:42:15 : INFO  : Building c2hroA_.12.pdb
12/01/2012 01:42:28 : INFO  : Building c2bg5C_.13.pdb
12/01/2012 01:42:43 : INFO  : Building d1dxea_.14.pdb
12/01/2012 01:42:57 : INFO  : Building c2hwgA_.15.pdb
12/01/2012 01:43:11 : INFO  : Building c2v5jB_.16.pdb
12/01/2012 01:43:24 : INFO  : Building c3qz6A_.17.pdb
12/01/2012 01:43:37 : INFO  : Building c2vwtA_.18.pdb
12/01/2012 01:43:50 : INFO  : Building c2olsA_.19.pdb
12/01/2012 01:44:06 : INFO  : Building c1izcA_.20.pdb
12/01/2012 01:44:41 : INFO  : Finished HH model building
12/01/2012 01:44:42 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
12/01/2012 01:45:36 : INFO  : html domain output complete ID '70cc66561210888c'
12/01/2012 04:24:39 : INFO  : Run end  : Thu Jan 12 04:24:38 GMT 2012
