HHsearch 1.5 NAME batch____ FAM FILE query COM //bmm/www/servers/phyre2/HH/hhmake -i /bmm/www/servers/phyre2/public_html/phyre2_output/707364f4e19605ad/query.a3m -o /bmm/www/servers/phyre2/public_html/phyre2_output/707364f4e19605ad/query.hhm DATE Mon Jan 16 14:20:37 2012 LENG 88 match states, 88 columns in multiple alignment FILT 93 out of 95 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.5 EVD 0.4281 0.0445 SEQ >ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCEEEEEECCCCCEEEHHHHHHHHHCCC >ss_conf 9425789999999875468987655545455433356788478999961986888663877524468718998982568653231159 >Consensus MkxxxxvxxaxllLagCssxxxxxxxxaxxxxxxxxxmanPAsvxCxxxGGxxxixxxxxGxxxgxCxlpxGxxxeeWalxrgxCxxx >batch____ MRAAFWVGCAALLLSACSSEPVQQATAAHVAPGLKASMSSSGEANCAMIGGSLSVARQLDGTAIGMCALPNGKRCSEQSLAAGSCGSY >UniRef50_A5UXT2(21-119:512) Putative uncharacterized protein n=4 Tax=Chloroflexaceae RepID=A5UXT2_ROSS1 E=6e-09 s/c=0.62 id=35% cov=89% ----------ALLSSGCSPFPSQPATltppqrvtesppvvsptpvpatTPPVTPTPLAALTDPASLYCIEKGGRLEIRSSGNSSHIGVCILDDGTLCEQW SFYRGECQS- >UniRef50_C4GIC7(51-130:133) Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GIC7_9NEIS E=7e-20 s/c=1.23 id=25% cov=91% MKNGFFFLSATALLAACAGATSPQKAVNQEPP---LGTPNPASVFCVQQGGKSVIRKDEGGNEYGVCVFPDGKEVYEWALFR------ >UniRef50_Q6MHR7(54-117:127) Putative uncharacterized protein n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MHR7_BDEBA E=3e-08 s/c=0.93 id=17% cov=73% ----------------CEAWSAAQKQAPRANLPQALA-GNPAARYCLDAGGENRIAKSEKGGEFDYCLFKDGSMIEAWGL-------- >UniRef50_B2Q4D0(13-105:106) Putative uncharacterized protein n=3 Tax=Providencia RepID=B2Q4D0_PROST E=3e-11 s/c=0.75 id=24% cov=98% LKFTFWnslFVGSLFVLAGCGSSETINTAhhvdrSASQYAQQVVNLGPQAQEACVSAGGLPSLNLELNGAQTAVCQFANGKRCAADVILTGSC--- >UniRef50_C6C4G4(1-91:94) Putative uncharacterized protein n=1 Tax=Dickeya dadantii Ech703 RepID=C6C4G4_DICDC E=1e-10 s/c=0.75 id=36% cov=98% MKTLTWLmVGIVLTLGGCSRHQDSDSAGSVTPVASQGNLSgpantSPAEVNCMLAGGRMGSARQLNGALIGTCLLANGKRCDENALLKGTC--- >UniRef50_A1S4J6(1-103:175) Putative uncharacterized protein n=1 Tax=Shewanella amazonensis SB2B RepID=A1S4J6_SHEAM E=4e-10 s/c=0.64 id=22% cov=82% -------------MAGCDNAPQAPSAditapdtvktavdeSSKVNSAQAPTLANPAAEFCVKIGGQYALEAPSEGGdeQKGECHLPNGKVVDAWTLYRAH ---- >UniRef50_A6D3D8(1-76:85) Hemolysin n=1 Tax=Vibrio shilonii AK1 RepID=A6D3D8_9VIBR E=2e-11 s/c=0.92 id=21% cov=82% MKKLQWVIGALAvgVMAGCASEPDKY------DVDEITVESDPAYVYCVEQGHKLE-RFSEEGKRVPYCVISDDERYTVW---------- >UniRef50_C7JH53(30-112:120) Putative uncharacterized protein n=8 Tax=Acetobacter pasteurianus RepID=C7JH53_ACEP3 E=8e-13 s/c=0.90 id=31% cov=89% MSAKKGVSGAVLavaitgLLGGCHEQHEENANRAVRP----LRMPNPAAVYCVKKGGTLSTESTDKG-QISYCHLPDGSVMEEWELFR------ >UniRef50_C8SC95(28-95:141) Putative uncharacterized protein n=1 Tax=Ferroglobus placidus DSM 10642 RepID=C8SC95_FERPL E=6e-10 s/c=0.96 id=19% cov=77% -----------------AGGSTPSTPVPAPGYQIPDSVPNPAAVYCTKLGYEYRVVT--DKGQTGYCIFPDGDKCDAWAFFNGKCG-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * 3277 157 * * * * * * * * * 1 0 * * * * * * 3791 0 0 R 2 * * * * * * * * 666 * 3284 4533 * * 2674 3899 * * * * 2 0 * * * * * * 3866 0 0 A 3 2282 * * * 2778 * * 4027 2213 3577 * 3933 2638 * * * 4020 * * * 3 0 * * * * * * 3866 0 0 A 4 1835 * * * * 3933 * 4075 3899 1621 * * * 3284 * * 3320 * * * 4 0 * * * * * * 3866 0 0 F 5 * * * * 1848 * * * 4007 3091 * * 3058 3457 * 4968 4134 3207 2896 * 5 0 * * * * * * 3974 0 0 W 6 * * * * 2711 2531 * * * 2303 * * * * * * * * 1084 * 6 179 3101 * 1264 777 * * 3974 1495 0 V 7 * * * * 3448 * * 3263 * 2083 * * * * * 4921 4534 1023 * * 7 61 4589 * 0 * * * 4340 1000 0 G 8 2717 3194 * * * 1930 * 2560 * 3766 * * * * * 3849 4581 3037 * * 8 0 * * * * * * 4390 0 0 C 9 4883 4198 * * 4725 1495 * 5093 * 2291 * * * * * 3723 2745 4046 * * 9 41 5166 * 0 * * * 4390 1000 0 A 10 840 4928 * * * 4736 * 4846 * 3568 4230 * * * * 3698 3038 * * * 10 0 * * * * * * 4487 0 0 A 11 1387 * * * * * * * * 3029 5753 * * * * 5298 2640 1783 * * 11 62 4572 * 0 * * * 4653 1148 0 L 12 3575 * * * 3525 * * 3982 * 1009 5203 * * * * 4636 4336 2716 * * 12 109 3782 * 1882 457 * * 4743 1507 0 L 13 3173 * * * 4020 4530 * * * 1272 3097 * * * * 4315 3739 2965 * * 13 0 * * * * * * 4853 0 0 L 14 4827 * * * * * * 6088 * 332 4006 * * * * 5281 * 3886 * * 14 23 5973 * 2000 415 * * 4976 1000 0 S 15 1109 * * * 4908 4642 * 5911 * 5691 * * * 5121 * 2343 2864 3970 * * 15 0 * * * * * * 4996 0 0 A 16 1295 * * * * 865 * * * 5242 * * * * * * * 5883 * * 16 42 * 5126 * * * * 5011 0 0 C 17 * 65 * * * * * 5795 * * 5262 * * * * * * * * * 17 0 * * * * 0 * 5076 0 1135 S 18 2559 * 5730 5627 * 3957 5809 * 5980 * * 3985 * 4900 * 939 3741 * * * 18 80 * 4205 * * * * 5183 0 0 S 19 4737 * * 4883 * 3126 * 5986 * 5617 5945 2975 3931 4761 3924 1527 3237 6246 * * 19 94 4455 5823 3485 135 * 0 5169 1454 2123 E 20 3686 5853 * 2779 5539 3119 3261 6161 4155 5893 5052 4459 * 3308 * 2518 5471 5949 5472 5715 20 94 4422 5936 2757 231 * 0 5156 1789 2226 P 21 4681 * 6347 2637 5144 6123 5590 5593 3980 * * 6299 1605 4290 * 3112 3372 4803 * * 21 0 * * * * * 0 5141 0 2278 V 22 2749 * 3273 3003 5043 4048 * * * * * 4411 4553 2718 * 3079 3181 4008 * * 22 30 * 5624 * * * 0 5141 0 2278 Q 23 2089 * 5816 2716 * 4865 * 5492 3594 6108 * 4405 3077 2319 * 4112 5872 * * * 23 91 * 4040 * * * 0 5131 0 2363 Q 24 2544 * 4652 4053 * * * * 5390 * * 3281 2960 1986 5969 3673 3899 * * 4069 24 72 * 4356 * * 2307 326 5019 0 2927 A 25 1816 * * * * 3800 * * 3858 5033 4190 4675 3566 4659 5207 3457 2358 6216 * * 25 78 6004 4747 0 * * 0 4985 1000 3140 T 26 1877 * 5418 3982 * 6059 * * 5650 * * 4416 2757 4151 * 3505 2016 5654 * * 26 195 3732 4281 3635 121 2037 403 4955 2170 3238 A 27 2130 * * 5732 * 4018 * * 5029 5465 5957 5879 3623 3026 4300 3074 3373 2892 * * 27 45 * 5039 * * 2593 261 4968 0 3075 A 28 1211 * 5701 * * 4469 * * 5695 * * 3479 1972 4326 * 4016 * * * 5147 28 180 5876 3314 2000 415 2313 324 4955 1000 3004 H 29 3755 * 5703 2578 * * 4012 5682 4531 * * 4462 5084 1499 3382 5080 6172 4420 * * 29 139 4325 4567 2520 276 3585 126 4909 1502 3205 V 30 3878 * 4075 3811 * * * 5150 4968 4655 5731 3847 3709 4003 4671 4015 3139 1944 * * 30 118 4529 4830 2067 393 3280 157 4863 1575 3371 A 31 2713 * 4064 * * 4868 6557 5499 3253 * * 2932 2116 5638 5558 3532 3957 4904 * 5126 31 185 5181 3432 2000 415 2111 380 4975 1000 3426 P 32 2320 * 5681 * * * * * 5652 5132 4615 4091 1766 5681 4730 3521 3712 3527 * 5020 32 128 * 3559 * * 4159 83 4980 0 3582 G 33 3225 * 4617 5548 * 3938 5107 * 3931 5569 * 4563 2440 2246 * 3539 3827 4154 * * 33 0 * * * * 2141 371 4885 0 3782 L 34 4576 * 5654 3561 * 5449 4842 4340 4924 5825 5557 3681 1962 2459 4550 4090 4855 5510 * * 34 80 4722 5945 2807 222 2500 281 5025 1084 3497 K 35 2242 * 5873 * * * 4575 4166 3086 3372 * * 4528 3456 3181 4696 5225 3273 * 4438 35 0 * * * * 577 1602 4520 0 3345 A 36 2709 * 5165 * * 5827 * 2197 * 2791 * * 5097 6250 5449 5645 2696 2325 * * 36 17 6401 * 1000 1000 869 1144 4581 1000 2399 S 37 2707 * 6400 6668 * 1574 * 5928 5163 6016 * 2836 5758 6041 6376 2676 4548 4492 * * 37 24 * 5926 * * * 0 4635 0 1586 M 38 3890 * * 4921 * * * 4420 4794 2228 1029 * * 6483 * 5186 6260 4728 5382 * 38 17 6386 * 1585 585 464 1862 4483 1000 1975 S 39 1179 * * 4409 * 3864 * * * * * * 2766 6427 5261 2499 3885 6229 * * 39 38 5274 * 2056 397 0 * 4542 1411 1000 S 40 5679 * 3744 5955 * * * * * 4828 * 594 4603 * * 3129 4778 * * * 40 21 6133 * 2807 222 * * 4502 1000 0 S 41 4448 * * 5487 * * * * * * * 5263 318 4633 * 3981 * * * * 41 20 * 6185 * * * * 4502 0 0 G 42 203 * * 6671 * 4756 * * * 5339 * * 6337 * * * 5431 5365 * * 42 18 6337 * 0 * * 0 4501 1000 1000 E 43 1975 * 4219 4109 * * * * 5025 * * * * 4194 5231 1063 6421 * * 4980 43 0 * * * * 0 * 4501 0 1000 A 44 2761 * 5775 2546 * * * 6671 4002 5844 6485 * * 6431 5120 * 4060 1114 * * 44 0 * * * * * * 4502 0 0 N 45 4603 * * * 2706 4910 5108 5263 * * * 2106 * * * * 5041 * 6067 1185 45 0 * * * * * * 4502 0 0 C 46 * 0 * * * * * * * * * * * * * * * * * * 46 0 * * * * * * 4507 0 0 A 47 2481 * * 3398 * 4539 * 3003 6071 4622 6179 * * 5549 * 5265 2580 1866 * * 47 0 * * * * * * 4507 0 0 M 48 4509 * 5343 2267 5043 * 6672 * 2786 3115 4793 4069 * 2901 6938 2821 5810 * * 5265 48 0 * * * * * * 4507 0 0 I 49 2915 * * * * * 4318 2596 3731 2785 5810 5642 * 2080 4640 5043 * 3527 * * 49 0 * * * * * * 4507 0 0 G 50 * * 5268 * * 59 * * * * * * * 6118 * * * * * * 50 28 * 5701 * * * * 4507 0 0 G 51 * * * * * 103 4430 * * * * * * * * * * * * 5478 51 0 * * * * * 0 4498 0 1405 S 52 6052 * 6482 2941 * * * 5279 2330 4603 5261 5545 * 3084 2513 4375 2768 4574 * * 52 0 * * * * * 0 4498 0 1405 L 53 * * * * * * 4913 5528 * 1392 3587 6054 3334 * 5976 2854 4759 3704 * 3338 53 0 * * * * * 0 4498 0 1405 S 54 2714 * 4235 2137 * 3549 * 4142 * 5985 5682 4666 * 4749 4268 3521 4177 3071 * * 54 46 * 4998 * * * 0 4498 0 1405 V 55 5028 * 5928 * 5170 * * 1538 * 1965 4633 5591 4885 * * 4337 4527 2868 * * 55 35 * 5375 * * 0 * 4420 0 1756 A 56 2330 * 5871 3712 * 5653 6517 * 3955 * 6373 4412 * 4963 2416 3679 3494 2581 * * 56 40 * 5188 * * 827 1197 4507 0 1482 R 57 5508 * 4708 * 4978 * 3977 4437 2084 4608 * 4692 * 4081 2506 3333 3407 * * 4206 57 58 * 4673 * * * 0 4537 0 1797 Q 58 4949 * 2827 2679 * 3430 * * * 4432 * 3196 6207 2216 5996 3720 3291 * * * 58 83 * 4152 * * * 0 4509 0 2148 L 59 2748 * 6548 2742 * 4090 * * 4223 1524 * 6656 2908 7124 5362 5223 5078 * * * 59 41 * 5170 * * 1029 972 4401 0 2577 D 60 3913 * 1644 3238 * 6276 4502 * 4418 * * 2045 * 3904 6396 3594 * * * * 60 18 * 6325 * * 2262 337 4434 0 2258 G 61 * * * 5783 * 104 * * 5443 * * * * * * 5133 * * * * 61 292 * 2448 * * 2066 394 4435 0 2184 T 62 2665 * 5681 3472 * 2077 * * 4805 * 5969 3329 * 3529 * 2901 3653 4494 * * 62 95 5877 4426 1000 1000 251 2649 4472 1000 3086 A 63 4575 * 6924 2405 * 5921 5220 * 5462 6129 * 6022 * 1526 3578 2311 5769 6102 * * 63 93 * 4009 * * 425 1970 4495 0 2403 I 64 6124 * * * 4518 * * 2541 5384 4556 * * * * 5601 5545 2041 2029 * 2526 64 0 * * * * 0 * 4496 0 2171 G 65 3876 * 5324 * * 648 * * * * * 6296 3246 * 5531 4122 4702 4923 * * 65 15 * 6554 * * * * 4484 0 0 M 66 4900 * * 6290 5145 * * 2721 7677 3959 2844 5379 * 4578 * * 3821 2183 * 2262 66 0 * * * * 0 * 4478 0 1000 C 67 * 0 * * * * * * * * * * * * * * * * * * 67 0 * * * * * * 4485 0 0 A 68 3808 * * 6015 * 6739 3262 3564 3735 4262 * 5445 * 2197 4993 * 2614 2718 * * 68 0 * * * * * * 4485 0 0 L 69 * * * * 1852 * * 5064 * 647 5531 * * * * 6012 5831 * * * 69 0 * * * * * * 4485 0 0 P 70 2244 * 5908 * * 6620 * * 3265 * * 7001 839 * 5041 4342 6430 * * * 70 0 * * * * * * 4485 0 0 N 71 * * 1271 * * 4049 * * 6282 * * 1363 5964 * * 3216 * * * * 71 0 * * * * * * 4485 0 0 G 72 * * 4567 * * 172 * * 5641 * * 5964 * * 5836 5933 * * * * 72 0 * * * * * * 4485 0 0 K 73 * * 4410 2430 * * * * 1601 * 7793 6281 * 3624 3404 3262 2937 6627 * * 73 0 * * * * * * 4479 0 0 R 74 4534 * * 3299 * * * 4232 3876 4703 4960 * * 3173 1523 5106 4187 3310 * 5655 74 0 * * * * * * 4494 0 0 C 75 * 1034 * 6822 * * * 2280 6018 5099 5357 * * 6731 * * * 2402 * 5085 75 0 * * * * * * 4494 0 0 S 76 4598 * 1895 1186 * 4867 * * * * * 4219 * * * 3487 3993 * * 6586 76 0 * * * * * * 4494 0 0 E 77 2946 * * 588 * 6244 6049 * * * * * * 3445 * 5758 6115 4265 * * 77 0 * * * * * * 4494 0 0 Q 78 6215 * 5738 6479 * * * * * * * 6166 * 3487 4065 * 4289 * 444 7035 78 0 * * * * * * 4494 0 0 S 79 1231 * 4134 3274 * 4086 * * 7103 6463 * * * 6153 * 2626 2899 5267 * * 79 0 * * * * * * 4390 0 0 L 80 * * * * 3252 * * 4210 * 484 * * * * * * * 4106 * 3884 80 0 * * * * * * 4400 0 0 A 81 4475 * * * 2188 5091 * 3611 5759 2735 3237 * * 5735 5072 * * * * 1731 81 0 * * * * * * 4327 0 0 A 82 5061 * 4748 5759 * * * * 5185 * * 3226 * 4096 733 3428 5218 * * * 82 0 * * * * * * 4327 0 0 G 83 3639 * * 4864 * 386 * * 6230 * * 5127 * 4678 4677 * * * * * 83 0 * * * * * * 4204 0 0 S 84 2461 * * 2967 * * 2434 * 3835 * * * * 5838 4134 1743 5444 4674 * * 84 0 * * * * * * 4199 0 0 C 85 * 0 * * * * * * * * * * * * * * * * * * 85 0 * * * * * * 3789 0 0 G 86 2135 * * * * 1578 * * * * * * * 2581 * 1887 * * * * 86 0 * * * * * * 2836 0 0 S 87 3131 * * * * * * * * * * * * 2623 * 842 2593 * * * 87 0 * * * * * * 2600 0 0 Y 88 * * * * * * 1585 * * * * * * * * * * * * 585 88 0 * * 0 * * * 1705 0 0 //