234 d2hoxa1 Probab=96.99   E-value=0.033  Score=34.27  Aligned_columns=286  Identities=9%

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC-------EEEECCCCCHHH
Q ss_conf             3788850650789999999999999872883357456864327999999999860877674-------799608888888
Q batch____       111 AYTPYQPEVSQGRLEALLNFQQVTLDLTGLDMASASLLDEATAAAEAMAMAKRVSKLKNAN-------RFFVASDVHPQT  183 (957)
Q Consensus       111 aYTPYQpEiSQG~LqalfEyQtmi~eLTGmdvaNaSlyD~atA~aEA~lma~r~~~k~~~~-------kvlV~~~~hP~~  183 (957)
                      .|+|.-+-.++-..+.+-+.-.++    |..+.-..-.=-++-..|++.++.+.-.+..-+       ++++..-..|.+
T Consensus        93 ~~~~~~~~~~~~L~~~i~~l~~~~----g~~~~~~~~iv~t~G~~~~l~~a~~aL~~pGd~v~~~~p~~v~~~~p~y~~~  168 (425)
T d2hoxa1          93 FFNPVSNFISFELEKTIKELHEVV----GNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVF  168 (425)
T ss_dssp             SCSSCCTTCCHHHHHHHHHHHHHH----TCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHH----CCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHH
T ss_conf             456643445289999999998850----8867887769994688999999999864888612356774357300237789


Q ss_pred             HHHHHHHCCCCCCEEEEECHHHHCCCCCEEEEEEECC-CCEEEEECHHHHHHHHHHCCCEEEEECCHHHHHHCCCHHHCC
Q ss_conf             9999862334786678603032046675689999789-940475028999999996696899973856733007636549
Q batch____       184 LDVVRTRAETFGFEVIVDDAQKVLDHQDVFGVLLQQV-GTTGEIHDYTALISELKSRKIVVSVAADIMALVLLTAPGKQG  262 (957)
Q Consensus       184 ~~Vi~Ty~~~~g~ei~~~~~~~~~~~~~vagv~iq~P-n~~G~iEd~~~i~~~~h~~gaL~vv~adp~AL~lL~~PGe~G  262 (957)
                      ...++.-....---..+.+......++.+..+++.+| |=.|.+.+       +.++|.+++.|---.-+.....|...+
T Consensus       169 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~P~NPtG~v~~-------a~~~~~~~i~De~y~~~~~~~~~~~~~  241 (425)
T d2hoxa1         169 REQTKYFDKKGYVWAGNAANYVNVSNPEQYIEMVTSPNNPEGLLRH-------AVIKGCKSIYDMVYYWPHYTPIKYKAD  241 (425)
T ss_dssp             HHHHHHSCCTTEEEEEEGGGGTTCSCGGGEEEEEESSCTTTCCCCC-------CSSTTCEEEEECTTCSTTTSCCCSCBC
T ss_pred             HHHHHHCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCEEEE-------EEECCCEEEEECCCCCCCCCCCCCCCC
T ss_conf             9999855997444247988999724888579998178888560654-------232396899714323433233334568


Q ss_pred             CCEEECCCCCCCCCCCCCCCCHHH-HHHHHHHHHHCCCCEEEEEECCCCCCCEEEECCHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf             528963887236789999741256-7662876640785337532046887410210102445300003355425379999
Q batch____       263 ADIVFGSAQRFGVPMGYGGPHAAF-FAAKDEYKRSMPGRIIGVSKDAAGNTALRMAMQTREQHIRREKANSNICTSQVLL  341 (957)
Q Consensus       263 ADIvvG~~Q~lG~P~~fGGP~aG~-~A~r~~l~R~mPGRivG~t~D~~G~~~~~ltLqtREQHIRReKAtSNICTnqaL~  341 (957)
                      -+|+++   +|+--++.-|...|+ ++-.+++..+|                            ++-+...++|.+.--.
T Consensus       242 ~~i~~~---S~SK~~g~~GlRiG~~i~~~~~i~~~l----------------------------~~~~~~~~~~~s~~~Q  290 (425)
T d2hoxa1         242 EDILLF---TMSKFTGHSGSRFGWALIKDESVYNNL----------------------------LNYMTKNTEGTPRETQ  290 (425)
T ss_dssp             CSEEEE---EHHHHTSCGGGCCEEEEECCHHHHHHH----------------------------HHHHHHHTSSCCHHHH
T ss_pred             CEEEEE---ECCCCCCCCCCCEEEEEECCHHHHHHH----------------------------HHHHHCCCCCCCHHHH
T ss_conf             549998---155101233231018996898999999----------------------------9864105777368999


Q ss_pred             HHHHHHHHHH---------HCHHHHHHHHHHHHHHHHHHHHHHHHCC-----------------CCCCCCCCCEEEEEEC
Q ss_conf             9999999997---------5887899999999999999999999779-----------------6704656420599965
Q batch____       342 ANIASLYAVY---------HGPVGLKRIANRIHRLTDILAAGLQQKG-----------------LKLRHAHYFDTLCVEV  395 (957)
Q Consensus       342 A~~a~~Y~~~---------~G~~Gl~~iA~~~~~~a~~l~~~L~~~G-----------------~~~~~~~fFd~~~i~~  395 (957)
                      ..+..+.-..         .+.+=++..-+....+...+.+.|.+.|                 .......+|--+...-
T Consensus       291 ~aA~~~L~~~~~~~~~~~~~~~~~~~~~r~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~~~~~~~~~~~~f~w~~~~~  370 (425)
T d2hoxa1         291 LRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW  370 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECS
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC
T ss_conf             99999960201345655554899999999999999999999986357630034565543221001377876169986789


Q ss_pred             CCHHHHHHHHHHCCCCEEE-----ECCCEEEEEECCCCCHHHHHHHHHHH
Q ss_conf             9978999999964898067-----04881488960455899999999873
Q batch____       396 ADKAGVLTRAEAAEINLRS-----DILNAVGITLDETTTRENVMQLFNVL  440 (957)
Q Consensus       396 ~~~~~~~~~a~~~~~nlr~-----~~~~~~~is~dE~~t~~~~~~l~~~~  440 (957)
                      +..+.+...+.++||..+.     .+.+++.||+  ..++++++.++.-+
T Consensus       371 ~~~~~~~~lL~e~GI~v~pGs~FG~~~~~vRiSl--~~~~e~ld~~l~rL  418 (425)
T d2hoxa1         371 EEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSL--IKTQDDFDQLMYYL  418 (425)
T ss_dssp             GGGCSHHHHHHHTTEECEEGGGGTSCTTEEEEEC--SSCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHCCEEEECCCCCCCCCCEEEEEE--CCCHHHHHHHHHHH
T ss_conf             8089999999966949971702389886599991--39989999999999