BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (104 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P39283 Uncharacterized protein yjeN n=12 Tax=Escherichi... 216 2e-55 UniRef50_B5BKH0 Putative uncharacterized protein n=19 Tax=Entero... 145 4e-34 UniRef50_A9MFQ3 Putative uncharacterized protein n=1 Tax=Salmone... 58 1e-07 UniRef50_UPI0001693308 hypothetical protein Xoryp_17850 n=1 Tax=... 40 0.018 >UniRef50_P39283 Uncharacterized protein yjeN n=12 Tax=Escherichia RepID=YJEN_ECOLI Length = 104 Score = 216 bits (549), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 104/104 (100%), Positives = 104/104 (100%) Query: 1 MDDTSRDPAITEDEIRALQFSAGDVAEIEQTILSFVDACHTRKVAMVVGSTINTLKDRDG 60 MDDTSRDPAITEDEIRALQFSAGDVAEIEQTILSFVDACHTRKVAMVVGSTINTLKDRDG Sbjct: 1 MDDTSRDPAITEDEIRALQFSAGDVAEIEQTILSFVDACHTRKVAMVVGSTINTLKDRDG 60 Query: 61 KRWGNLPDIYCAYLIRCLVFRGELVGYGDLFRMRYSEIKRPVTL 104 KRWGNLPDIYCAYLIRCLVFRGELVGYGDLFRMRYSEIKRPVTL Sbjct: 61 KRWGNLPDIYCAYLIRCLVFRGELVGYGDLFRMRYSEIKRPVTL 104 >UniRef50_B5BKH0 Putative uncharacterized protein n=19 Tax=Enterobacteriaceae RepID=B5BKH0_SALPK Length = 125 Score = 145 bits (366), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 71/103 (68%), Positives = 82/103 (79%), Gaps = 1/103 (0%) Query: 1 MDDTSRDPAITEDEIRALQFSAGDVAEIEQTILSFVDACHTRKVAMVVGSTINTLKDRDG 60 M+D+SRDP ITEDEIRAL F+ D+ EIE+ ILS V RKVAMVVG TI TL+DRD Sbjct: 20 MNDSSRDPIITEDEIRALNFTPEDILEIEKVILSSVHVAR-RKVAMVVGMTIGTLRDRDE 78 Query: 61 KRWGNLPDIYCAYLIRCLVFRGELVGYGDLFRMRYSEIKRPVT 103 +W ++ DIYCAY++RCLVFRGELVGYGDLFRMRYSEI PV Sbjct: 79 DKWKHVSDIYCAYVVRCLVFRGELVGYGDLFRMRYSEINLPVA 121 >UniRef50_A9MFQ3 Putative uncharacterized protein n=1 Tax=Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- RepID=A9MFQ3_SALAR Length = 72 Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/48 (62%), Positives = 36/48 (75%), Gaps = 1/48 (2%) Query: 1 MDDTSRDPAITEDEIRALQFSAGDVAEIEQTILSFVDACHTRKVAMVV 48 M+D+SRDP ITEDE+RAL F+ D+ EIE+ ILS V RKVAMVV Sbjct: 20 MNDSSRDPIITEDEVRALNFTPEDILEIEKVILSSVHVTR-RKVAMVV 66 >UniRef50_UPI0001693308 hypothetical protein Xoryp_17850 n=1 Tax=Xanthomonas oryzae pv. oryzicola BLS256 RepID=UPI0001693308 Length = 105 Score = 40.4 bits (93), Expect = 0.018, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 8/94 (8%) Query: 8 PAITEDEIRAL-QFSAGDVAEIEQTILSFVDACHT-RKVAMVVGSTINTLKDRDGKRWGN 65 P + +E+ A ++ D+ I+ +++ +C + KVA+VV ++ D + + Sbjct: 10 PPLDAEELEAAASLTSDDIQAIDCALIAA--SCESWSKVALVVSVAMDAYPDA----YCD 63 Query: 66 LPDIYCAYLIRCLVFRGELVGYGDLFRMRYSEIK 99 +PDI+ A I LV G L G+L RMR+SE++ Sbjct: 64 IPDIFYAQRICYLVSAGHLEASGNLNRMRFSEVR 97 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P39283 Uncharacterized protein yjeN n=12 Tax=Escherichi... 185 4e-46 UniRef50_B5BKH0 Putative uncharacterized protein n=19 Tax=Entero... 178 6e-44 UniRef50_A9MFQ3 Putative uncharacterized protein n=1 Tax=Salmone... 76 3e-13 Sequences not found previously or not previously below threshold: UniRef50_UPI0001693308 hypothetical protein Xoryp_17850 n=1 Tax=... 38 0.065 CONVERGED! >UniRef50_P39283 Uncharacterized protein yjeN n=12 Tax=Escherichia RepID=YJEN_ECOLI Length = 104 Score = 185 bits (469), Expect = 4e-46, Method: Composition-based stats. Identities = 104/104 (100%), Positives = 104/104 (100%) Query: 1 MDDTSRDPAITEDEIRALQFSAGDVAEIEQTILSFVDACHTRKVAMVVGSTINTLKDRDG 60 MDDTSRDPAITEDEIRALQFSAGDVAEIEQTILSFVDACHTRKVAMVVGSTINTLKDRDG Sbjct: 1 MDDTSRDPAITEDEIRALQFSAGDVAEIEQTILSFVDACHTRKVAMVVGSTINTLKDRDG 60 Query: 61 KRWGNLPDIYCAYLIRCLVFRGELVGYGDLFRMRYSEIKRPVTL 104 KRWGNLPDIYCAYLIRCLVFRGELVGYGDLFRMRYSEIKRPVTL Sbjct: 61 KRWGNLPDIYCAYLIRCLVFRGELVGYGDLFRMRYSEIKRPVTL 104 >UniRef50_B5BKH0 Putative uncharacterized protein n=19 Tax=Enterobacteriaceae RepID=B5BKH0_SALPK Length = 125 Score = 178 bits (451), Expect = 6e-44, Method: Composition-based stats. Identities = 71/103 (68%), Positives = 82/103 (79%), Gaps = 1/103 (0%) Query: 1 MDDTSRDPAITEDEIRALQFSAGDVAEIEQTILSFVDACHTRKVAMVVGSTINTLKDRDG 60 M+D+SRDP ITEDEIRAL F+ D+ EIE+ ILS V RKVAMVVG TI TL+DRD Sbjct: 20 MNDSSRDPIITEDEIRALNFTPEDILEIEKVILSSVHVAR-RKVAMVVGMTIGTLRDRDE 78 Query: 61 KRWGNLPDIYCAYLIRCLVFRGELVGYGDLFRMRYSEIKRPVT 103 +W ++ DIYCAY++RCLVFRGELVGYGDLFRMRYSEI PV Sbjct: 79 DKWKHVSDIYCAYVVRCLVFRGELVGYGDLFRMRYSEINLPVA 121 >UniRef50_A9MFQ3 Putative uncharacterized protein n=1 Tax=Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- RepID=A9MFQ3_SALAR Length = 72 Score = 76.1 bits (186), Expect = 3e-13, Method: Composition-based stats. Identities = 30/48 (62%), Positives = 36/48 (75%), Gaps = 1/48 (2%) Query: 1 MDDTSRDPAITEDEIRALQFSAGDVAEIEQTILSFVDACHTRKVAMVV 48 M+D+SRDP ITEDE+RAL F+ D+ EIE+ ILS V RKVAMVV Sbjct: 20 MNDSSRDPIITEDEVRALNFTPEDILEIEKVILSSVHVTR-RKVAMVV 66 >UniRef50_UPI0001693308 hypothetical protein Xoryp_17850 n=1 Tax=Xanthomonas oryzae pv. oryzicola BLS256 RepID=UPI0001693308 Length = 105 Score = 38.4 bits (88), Expect = 0.065, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 5/93 (5%) Query: 8 PAITEDEIRALQFSAGDVAEIEQTILSFVDACHTRKVAMVVGSTINTLKDRDGKRWGNLP 67 P E+ A ++ D+ I+ +++ KVA+VV + D + ++P Sbjct: 11 PLDAEELEAAASLTSDDIQAIDCALIAA-SCESWSKVALVVSVAM----DAYPDAYCDIP 65 Query: 68 DIYCAYLIRCLVFRGELVGYGDLFRMRYSEIKR 100 DI+ A I LV G L G+L RMR+SE++ Sbjct: 66 DIFYAQRICYLVSAGHLEASGNLNRMRFSEVRL 98 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.322 0.145 0.430 Lambda K H 0.267 0.0447 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 447,456,457 Number of Sequences: 3077464 Number of extensions: 16600417 Number of successful extensions: 46424 Number of sequences better than 1.0e-01: 4 Number of HSP's better than 0.1 without gapping: 6 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 46416 Number of HSP's gapped (non-prelim): 8 length of query: 104 length of database: 1,040,396,356 effective HSP length: 72 effective length of query: 32 effective length of database: 818,818,948 effective search space: 26202206336 effective search space used: 26202206336 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.4 bits) S2: 87 (38.0 bits)