Phyre 2 alignment of P39283 with c2plyB_

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Job Description | P39283
Confidence | 11.24% | Date | Thu Jan 5 11:58:53 GMT 2012
Rank | 15 | Aligned Residues | 77
% Identity | 14% | Template | c2plyB_
PDB info | PDB header:translation/rna | Chain: B: PDB Molecule:selenocysteine-specific elongation factor; | PDBTitle: structure of the mrna binding fragment of elongation factor2 selb in complex with secis rna.
Resolution | 2.60 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 21 | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | S | A | G | D | V | A | E | I | E | Q | T | I | L | S | F | V | D | A | C | H | T | R | K | V | A | M | V | V | G | S | T | I | N | T | L | K | D | R | D | G | K | R | W | G | N | L | P | D | I | Y | C | A | Y | L | I | R | C | L | V | F | R | G | E | L | V | G | Y | G | D | L | F | R | M | R | Y | S | E | I | K | R
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | S | T | E | R | Y | Q | A | W | W | Q | A | V | T | R | A | L | E | E | F | H | . | S | R | Y | P | L | R | P | G | L | A | R | E | E | L | R | S | R | Y | . | . | . | F | S | R | L | P | A | R | V | Y | Q | A | L | L | E | E | W | S | R | E | G | R | L | Q | L | A | A | N | T | V | A | L | A | G | F | T | P | S | F
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  | T | T | S |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  | T | T | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  | S | S |  |  |  |  | T | T |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 436 | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . |  | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . |  |  |  | . | . | . | . | . | . | 480 | . | . | . | . | . | . | . | . | . | 490 | . | . | . | . | . | . | . | . | . | 500 | . | . | . | . | . | . | . | . | . | 510 | .
|  | 101
Predicted Secondary structure |  |
Query SS confidence |  |
Query Sequence |  | P
Query Conservation |  |
Alig confidence |  |
Template Conservation |  |
Template Sequence |  | S
Template Known Secondary structure |  |
Template Predicted Secondary structure |  |
Template SS confidence |  |
|  | 512

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
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