BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (104 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P39283 Uncharacterized protein yjeN n=12 Tax=Escherichi...   216   2e-55
UniRef50_B5BKH0 Putative uncharacterized protein n=19 Tax=Entero...   145   4e-34
UniRef50_A9MFQ3 Putative uncharacterized protein n=1 Tax=Salmone...    58   1e-07
UniRef50_UPI0001693308 hypothetical protein Xoryp_17850 n=1 Tax=...    40   0.018

>UniRef50_P39283 Uncharacterized protein yjeN n=12 Tax=Escherichia RepID=YJEN_ECOLI
          Length = 104

 Score =  216 bits (549), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 1   MDDTSRDPAITEDEIRALQFSAGDVAEIEQTILSFVDACHTRKVAMVVGSTINTLKDRDG 60
           MDDTSRDPAITEDEIRALQFSAGDVAEIEQTILSFVDACHTRKVAMVVGSTINTLKDRDG
Sbjct: 1   MDDTSRDPAITEDEIRALQFSAGDVAEIEQTILSFVDACHTRKVAMVVGSTINTLKDRDG 60

Query: 61  KRWGNLPDIYCAYLIRCLVFRGELVGYGDLFRMRYSEIKRPVTL 104
           KRWGNLPDIYCAYLIRCLVFRGELVGYGDLFRMRYSEIKRPVTL
Sbjct: 61  KRWGNLPDIYCAYLIRCLVFRGELVGYGDLFRMRYSEIKRPVTL 104


>UniRef50_B5BKH0 Putative uncharacterized protein n=19 Tax=Enterobacteriaceae
           RepID=B5BKH0_SALPK
          Length = 125

 Score =  145 bits (366), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 71/103 (68%), Positives = 82/103 (79%), Gaps = 1/103 (0%)

Query: 1   MDDTSRDPAITEDEIRALQFSAGDVAEIEQTILSFVDACHTRKVAMVVGSTINTLKDRDG 60
           M+D+SRDP ITEDEIRAL F+  D+ EIE+ ILS V     RKVAMVVG TI TL+DRD 
Sbjct: 20  MNDSSRDPIITEDEIRALNFTPEDILEIEKVILSSVHVAR-RKVAMVVGMTIGTLRDRDE 78

Query: 61  KRWGNLPDIYCAYLIRCLVFRGELVGYGDLFRMRYSEIKRPVT 103
            +W ++ DIYCAY++RCLVFRGELVGYGDLFRMRYSEI  PV 
Sbjct: 79  DKWKHVSDIYCAYVVRCLVFRGELVGYGDLFRMRYSEINLPVA 121


>UniRef50_A9MFQ3 Putative uncharacterized protein n=1 Tax=Salmonella enterica
          subsp. arizonae serovar 62:z4,z23:-- RepID=A9MFQ3_SALAR
          Length = 72

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/48 (62%), Positives = 36/48 (75%), Gaps = 1/48 (2%)

Query: 1  MDDTSRDPAITEDEIRALQFSAGDVAEIEQTILSFVDACHTRKVAMVV 48
          M+D+SRDP ITEDE+RAL F+  D+ EIE+ ILS V     RKVAMVV
Sbjct: 20 MNDSSRDPIITEDEVRALNFTPEDILEIEKVILSSVHVTR-RKVAMVV 66


>UniRef50_UPI0001693308 hypothetical protein Xoryp_17850 n=1 Tax=Xanthomonas oryzae pv.
          oryzicola BLS256 RepID=UPI0001693308
          Length = 105

 Score = 40.4 bits (93), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 8/94 (8%)

Query: 8  PAITEDEIRAL-QFSAGDVAEIEQTILSFVDACHT-RKVAMVVGSTINTLKDRDGKRWGN 65
          P +  +E+ A    ++ D+  I+  +++   +C +  KVA+VV   ++   D     + +
Sbjct: 10 PPLDAEELEAAASLTSDDIQAIDCALIAA--SCESWSKVALVVSVAMDAYPDA----YCD 63

Query: 66 LPDIYCAYLIRCLVFRGELVGYGDLFRMRYSEIK 99
          +PDI+ A  I  LV  G L   G+L RMR+SE++
Sbjct: 64 IPDIFYAQRICYLVSAGHLEASGNLNRMRFSEVR 97


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P39283 Uncharacterized protein yjeN n=12 Tax=Escherichi...   185   4e-46
UniRef50_B5BKH0 Putative uncharacterized protein n=19 Tax=Entero...   178   6e-44
UniRef50_A9MFQ3 Putative uncharacterized protein n=1 Tax=Salmone...    76   3e-13

Sequences not found previously or not previously below threshold:

UniRef50_UPI0001693308 hypothetical protein Xoryp_17850 n=1 Tax=...    38   0.065


CONVERGED!
>UniRef50_P39283 Uncharacterized protein yjeN n=12 Tax=Escherichia RepID=YJEN_ECOLI
          Length = 104

 Score =  185 bits (469), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 1   MDDTSRDPAITEDEIRALQFSAGDVAEIEQTILSFVDACHTRKVAMVVGSTINTLKDRDG 60
           MDDTSRDPAITEDEIRALQFSAGDVAEIEQTILSFVDACHTRKVAMVVGSTINTLKDRDG
Sbjct: 1   MDDTSRDPAITEDEIRALQFSAGDVAEIEQTILSFVDACHTRKVAMVVGSTINTLKDRDG 60

Query: 61  KRWGNLPDIYCAYLIRCLVFRGELVGYGDLFRMRYSEIKRPVTL 104
           KRWGNLPDIYCAYLIRCLVFRGELVGYGDLFRMRYSEIKRPVTL
Sbjct: 61  KRWGNLPDIYCAYLIRCLVFRGELVGYGDLFRMRYSEIKRPVTL 104


>UniRef50_B5BKH0 Putative uncharacterized protein n=19 Tax=Enterobacteriaceae
           RepID=B5BKH0_SALPK
          Length = 125

 Score =  178 bits (451), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 71/103 (68%), Positives = 82/103 (79%), Gaps = 1/103 (0%)

Query: 1   MDDTSRDPAITEDEIRALQFSAGDVAEIEQTILSFVDACHTRKVAMVVGSTINTLKDRDG 60
           M+D+SRDP ITEDEIRAL F+  D+ EIE+ ILS V     RKVAMVVG TI TL+DRD 
Sbjct: 20  MNDSSRDPIITEDEIRALNFTPEDILEIEKVILSSVHVAR-RKVAMVVGMTIGTLRDRDE 78

Query: 61  KRWGNLPDIYCAYLIRCLVFRGELVGYGDLFRMRYSEIKRPVT 103
            +W ++ DIYCAY++RCLVFRGELVGYGDLFRMRYSEI  PV 
Sbjct: 79  DKWKHVSDIYCAYVVRCLVFRGELVGYGDLFRMRYSEINLPVA 121


>UniRef50_A9MFQ3 Putative uncharacterized protein n=1 Tax=Salmonella enterica
          subsp. arizonae serovar 62:z4,z23:-- RepID=A9MFQ3_SALAR
          Length = 72

 Score = 76.1 bits (186), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/48 (62%), Positives = 36/48 (75%), Gaps = 1/48 (2%)

Query: 1  MDDTSRDPAITEDEIRALQFSAGDVAEIEQTILSFVDACHTRKVAMVV 48
          M+D+SRDP ITEDE+RAL F+  D+ EIE+ ILS V     RKVAMVV
Sbjct: 20 MNDSSRDPIITEDEVRALNFTPEDILEIEKVILSSVHVTR-RKVAMVV 66


>UniRef50_UPI0001693308 hypothetical protein Xoryp_17850 n=1 Tax=Xanthomonas oryzae pv.
           oryzicola BLS256 RepID=UPI0001693308
          Length = 105

 Score = 38.4 bits (88), Expect = 0.065,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 5/93 (5%)

Query: 8   PAITEDEIRALQFSAGDVAEIEQTILSFVDACHTRKVAMVVGSTINTLKDRDGKRWGNLP 67
           P   E+   A   ++ D+  I+  +++        KVA+VV   +    D     + ++P
Sbjct: 11  PLDAEELEAAASLTSDDIQAIDCALIAA-SCESWSKVALVVSVAM----DAYPDAYCDIP 65

Query: 68  DIYCAYLIRCLVFRGELVGYGDLFRMRYSEIKR 100
           DI+ A  I  LV  G L   G+L RMR+SE++ 
Sbjct: 66  DIFYAQRICYLVSAGHLEASGNLNRMRFSEVRL 98


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.322    0.145    0.430 

Lambda     K      H
   0.267   0.0447    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 447,456,457
Number of Sequences: 3077464
Number of extensions: 16600417
Number of successful extensions: 46424
Number of sequences better than 1.0e-01: 4
Number of HSP's better than  0.1 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 46416
Number of HSP's gapped (non-prelim): 8
length of query: 104
length of database: 1,040,396,356
effective HSP length: 72
effective length of query: 32
effective length of database: 818,818,948
effective search space: 26202206336
effective search space used: 26202206336
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.4 bits)
S2: 87 (38.0 bits)
