 |
| Job Description | P0AEE3 | | Confidence | 26.18% | Date | Thu Jan 5 11:23:07 GMT 2012 |
| Rank | 477 | Aligned Residues | 40 |
| % Identity | 13% | Template | c2jsnA_ |
| PDB info |
PDB header:protein transport | Chain: A: PDB Molecule:trafficking protein particle complex subunit 4; |
PDBTitle: solution structure of the atypical pdz-like domain of2 synbindin
|
| Resolution | UNK |
|
|   |   |
297 | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | |
|
|
|
|
. | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . |
| Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |  |
|
|  |  |
| . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
G | I | Q | V | N | D | L | I | I | S | V | D | N | K | P | A | . |
. |
. |
. |
. |
I | S | A | L | E | T | M | D | Q | V | A | E | I | R | P | G | S | V | I | P | V | V | V | M | R |
| Query Conservation |   |
|
|   |   |
|
|
|
|   |   |
|
|
|   |   |
| . | . | . | . | . |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |   |
|   |   |   |
|   |
|
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
|
|   |
|
|
|   |
|   |
|
|
|
|
|   |
|
|
|   |   |   |   |
|
|
|   |
|
|   |   |
|   |   | . |   |   |
|
|
|
|
|
|
|
|   |
|
| Template Sequence |   |
G | I | R | V | G | H | A | V | L | A | I | N | G | M | D | V | N | G | R | Y | T | A | D | G | K | E | V | L | E | Y | L | G | N | . |
P | A | N | Y | P | V | S | I | R | F | G | R |
| Template Known Secondary structure |   |
S | T | T | T | T |
|  |  |  |  |  | T | T |  |  |
| B | T | T | B |
| S | S |
|
| B |  |  |  |  |  |  | S | . | G | G | G |
| S |  |  |  |  |  |  |
|
| Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
| . |
|
|
|
|
|  |  |  |  |  |
|
|
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
46 | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | |
. | 80 | . | . | . | . | . | . | . | . | . | 90 |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|