Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	K	S	I	T	T	L	D	L	N	L	L	L	C	L	Q	L	L	M	Q	E	R	S	V	T	K	A	A	K	R	I	N	V	T	P	S	A	V	S	K	S	L	A	K	L	R	A	W	F	D	D	P	L	F	V	N	S	P	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																											?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		G	L	S	P	T	P	L	M	V	S	M	E	Q	N	L	A	E	W	M	Q	M	S	N	L	L	L	D	K	P	H	H	Q	T	P	R	G	L	K	F	E	L	A	A	E	S	P	L	M	M	I	M	L	N	A	L	S	K	Q	I	Y
Secondary structure
SS confidence
Disorder																											?	?	?		?	?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		Q	R	Y	P	Q	A	T	I	K	L	R	N	W	D	Y	D	S	L	D	A	I	T	R	G	E	V	D	I	G	F	S	G	R	E	S	H	P	R	S	R	E	L	L	S	S	L	P	L	A	I	D	Y	E	V	L	F	S	D	V	P
Secondary structure
SS confidence
Disorder														?		?																				?		?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		C	V	W	L	R	K	D	H	P	A	L	H	Q	T	W	N	L	D	T	F	L	R	Y	P	H	I	S	I	C	W	E	Q	S	D	T	W	A	L	D	N	V	L	Q	E	L	G	R	E	R	T	I	A	M	S	L	P	E	F	E	Q
Secondary structure
SS confidence
Disorder												?	?																																												?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		S	L	F	M	A	A	Q	P	D	N	L	L	L	A	T	A	P	R	Y	C	Q	Y	Y	N	Q	L	H	Q	L	P	L	V	A	L	P	L	P	F	D	E	S	Q	Q	K	K	L	E	V	P	F	T	L	L	W	H	K	R	N	S	H
Secondary structure
SS confidence
Disorder																																									?	?	?	?	?	?													?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Sequence		N	P	K	I	V	W	L	R	E	T	I	K	N	L	Y	A	S	M	A
Secondary structure
SS confidence
Disorder																			?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2esn chain C Region: 5 - 315 Aligned: 290 Modelled: 303 Confidence: 100.0% Identity: 26% PDB header:structural genomics, unknown function Chain: C: PDB Molecule:probable transcriptional regulator; PDBTitle: the crystal structure of probable transcriptional regulator pa04772 from pseudomonas aeruginosa Phyre2 PDB 3fzj chain C Region: 8 - 314 Aligned: 290 Modelled: 307 Confidence: 100.0% Identity: 18% PDB header:transcription regulator Chain: C: PDB Molecule:lysr type regulator of tsambcd; PDBTitle: tsar low resolution crystal structure, tetragonal form Phyre2 PDB 3hhg chain F Region: 7 - 313 Aligned: 288 Modelled: 307 Confidence: 100.0% Identity: 14% PDB header:transcription regulator Chain: F: PDB Molecule:transcriptional regulator, lysr family; PDBTitle: structure of crga, a lysr-type transcriptional regulator from2 neisseria meningitidis. Phyre2 PDB 1iz1 chain B Region: 8 - 317 Aligned: 289 Modelled: 305 Confidence: 100.0% Identity: 13% PDB header:dna binding protein Chain: B: PDB Molecule:lysr-type regulatory protein; PDBTitle: crystal structure of cbnr, a lysr family transcriptional2 regulator Phyre2 PDB 3t1b chain B Region: 8 - 315 Aligned: 286 Modelled: 305 Confidence: 100.0% Identity: 12% PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator, lysr family; PDBTitle: crystal structure of the full-length aphb n100e variant Phyre2 PDB 3fzv chain C Region: 7 - 315 Aligned: 281 Modelled: 309 Confidence: 100.0% Identity: 17% PDB header:transcription regulator Chain: C: PDB Molecule:probable transcriptional regulator; PDBTitle: crystal structure of pa01 protein, putative lysr family2 transcriptional regulator from pseudomonas aeruginosa Phyre2 PDB 3isp chain A Region: 7 - 318 Aligned: 285 Modelled: 294 Confidence: 100.0% Identity: 14% PDB header:transcription Chain: A: PDB Molecule:hth-type transcriptional regulator PDBTitle: crystal structure of argp from mycobacterium tuberculosis Phyre2 PDB 1b9n chain A Region: 1 - 154 Aligned: 143 Modelled: 154 Confidence: 99.9% Identity: 14% PDB header:transcription Chain: A: PDB Molecule:protein (mode); PDBTitle: regulator from escherichia coli Phyre2 PDB 2esn chain A domain 1 Region: 5 - 89 Aligned: 85 Modelled: 85 Confidence: 99.9% Identity: 31% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: LysR-like transcriptional regulators Phyre2 PDB 3m1e chain A Region: 8 - 94 Aligned: 87 Modelled: 87 Confidence: 99.9% Identity: 16% PDB header:transcription regulator Chain: A: PDB Molecule:hth-type transcriptional regulator benm; PDBTitle: crystal structure of benm_dbd Phyre2 PDB 1b9m chain A domain 1 Region: 8 - 96 Aligned: 89 Modelled: 89 Confidence: 99.9% Identity: 12% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: N-terminal domain of molybdate-dependent transcriptional regulator ModE Phyre2 PDB 1uth chain A Region: 91 - 318 Aligned: 210 Modelled: 228 Confidence: 99.8% Identity: 20% Fold: Periplasmic binding protein-like II Superfamily: Periplasmic binding protein-like II Family: Phosphate binding protein-like Phyre2 PDB 1ixc chain A domain 1 Region: 9 - 95 Aligned: 82 Modelled: 87 Confidence: 99.8% Identity: 15% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: LysR-like transcriptional regulators Phyre2 PDB 3oxn chain D Region: 92 - 318 Aligned: 208 Modelled: 214 Confidence: 99.8% Identity: 20% PDB header:transcription regulator Chain: D: PDB Molecule:putative transcriptional regulator, lysr family; PDBTitle: the crystal structure of a putative transcriptional regulator from2 vibrio parahaemolyticus Phyre2 PDB 2uye chain A Region: 91 - 317 Aligned: 209 Modelled: 224 Confidence: 99.8% Identity: 20% PDB header:transcription Chain: A: PDB Molecule:regulatory protein; PDBTitle: double mutant y110s,f111v dntr from burkholderia sp. strain2 dnt in complex with thiocyanate Phyre2 PDB 2hxr chain A Region: 98 - 316 Aligned: 198 Modelled: 219 Confidence: 99.8% Identity: 18% PDB header:transcription Chain: A: PDB Molecule:hth-type transcriptional regulator cynr; PDBTitle: structure of the ligand binding domain of e. coli cynr, a2 transcriptional regulator controlling cyanate metabolism Phyre2 PDB 2esn chain A domain 2 Region: 91 - 314 Aligned: 207 Modelled: 221 Confidence: 99.8% Identity: 26% Fold: Periplasmic binding protein-like II Superfamily: Periplasmic binding protein-like II Family: Phosphate binding protein-like Phyre2 PDB 2fyi chain A domain 1 Region: 93 - 313 Aligned: 203 Modelled: 221 Confidence: 99.8% Identity: 13% Fold: Periplasmic binding protein-like II Superfamily: Periplasmic binding protein-like II Family: Phosphate binding protein-like Phyre2 PDB 2ijl chain B Region: 8 - 88 Aligned: 80 Modelled: 81 Confidence: 99.8% Identity: 16% PDB header:transcription Chain: B: PDB Molecule:molybdenum-binding transcriptional repressor; PDBTitle: the structure of a putative mode from agrobacterium tumefaciens. Phyre2 PDB 2ql3 chain G Region: 96 - 312 Aligned: 200 Modelled: 217 Confidence: 99.7% Identity: 17% PDB header:transcription Chain: G: PDB Molecule:probable transcriptional regulator, lysr family protein; PDBTitle: crystal structure of the c-terminal domain of a probable lysr family2 transcriptional regulator from rhodococcus sp. rha1 Phyre2 1 c2esnC_ 2 c3fzjC_ 3 c3hhgF_ 4 c1iz1B_ 5 c3t1bB_ 6 c3fzvC_ 7 c3ispA_ 8 c1b9nA_ 9 d2esna1 10 c3m1eA_ 11 d1b9ma1 12 d1utha_ 13 d1ixca1 14 c3oxnD_ 15 c2uyeA_ 16 c2hxrA_ 17 d2esna2 18 d2fyia1 19 c2ijlB_ 20 c2ql3G_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467