Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	F	L	A	S	L	L	R	R	I	A	F	S	Y	Y	D	Y	K	A	Y	N	F	N	I	E	K	T	D	F	V	V	I	H	I	P	D	Q	I	G	D	A	M	A	I	F	P	V	I	R	A	L	E	L	H	K	I	K	H	L	L
Secondary structure
SS confidence
Disorder		?	?															?		?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		I	V	T	S	T	I	N	L	E	V	F	N	A	L	K	L	E	Q	T	K	L	T	L	V	T	M	T	M	Q	D	H	A	T	L	K	E	I	K	D	L	A	K	N	I	T	Q	Q	Y	G	T	P	D	L	C	I	E	G	M	R	K
Secondary structure
SS confidence
Disorder																													?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		K	N	L	K	T	M	L	F	I	S	Q	L	K	A	K	T	N	F	Q	V	V	G	I	T	M	N	C	F	S	P	L	C	K	N	A	S	S	M	D	Q	K	L	R	A	P	V	P	M	T	W	A	F	M	M	R	E	A	G	F	P
Secondary structure
SS confidence
Disorder																																							?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		A	V	R	P	I	Y	E	L	P	L	S	E	D	V	L	D	E	V	R	E	E	M	R	S	L	G	S	Y	I	A	F	N	L	E	G	S	S	Q	E	R	T	F	S	L	S	I	A	E	N	L	I	A	K	I	Q	S	E	T	D	I
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		P	I	V	I	V	H	G	P	K	G	E	D	K	A	R	A	L	V	D	C	Y	N	N	V	Y	R	L	S	L	P	P	S	I	K	R	S	A	A	I	I	K	D	A	Y	I	A	I	T	P	D	T	S	I	L	H	M	A	S	A	Y
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence		N	T	P	V	V	A	I	Y	A	D	Y	K	T	R	W	P	A	M	A	D	V	S	E	S	V	V	V	G	Q	K	I	D	N	I	S	L	D	E	F	A	K	A	L	K	S	V	L	A	R	I
Secondary structure
SS confidence
Disorder																																																	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3tov chain B Region: 21 - 348 Aligned: 318 Modelled: 328 Confidence: 100.0% Identity: 14% PDB header:transferase Chain: B: PDB Molecule:glycosyl transferase family 9; PDBTitle: the crystal structure of the glycosyl transferase family 9 from2 veillonella parvula dsm 2008 Phyre2 PDB 1psw chain A Region: 28 - 348 Aligned: 304 Modelled: 316 Confidence: 100.0% Identity: 13% Fold: UDP-Glycosyltransferase/glycogen phosphorylase Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase Family: ADP-heptose LPS heptosyltransferase II Phyre2 PDB 2h1f chain B Region: 29 - 348 Aligned: 294 Modelled: 320 Confidence: 100.0% Identity: 12% PDB header:transferase Chain: B: PDB Molecule:lipopolysaccharide heptosyltransferase-1; PDBTitle: e. coli heptosyltransferase waac with adp Phyre2 PDB 1v4v chain A Region: 27 - 349 Aligned: 313 Modelled: 321 Confidence: 99.2% Identity: 12% Fold: UDP-Glycosyltransferase/glycogen phosphorylase Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase Family: UDP-N-acetylglucosamine 2-epimerase Phyre2 PDB 3ot5 chain D Region: 29 - 349 Aligned: 311 Modelled: 319 Confidence: 99.1% Identity: 11% PDB header:isomerase Chain: D: PDB Molecule:udp-n-acetylglucosamine 2-epimerase; PDBTitle: 2.2 angstrom resolution crystal structure of putative udp-n-2 acetylglucosamine 2-epimerase from listeria monocytogenes Phyre2 PDB 1o6c chain A Region: 29 - 349 Aligned: 301 Modelled: 318 Confidence: 98.6% Identity: 10% Fold: UDP-Glycosyltransferase/glycogen phosphorylase Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase Family: UDP-N-acetylglucosamine 2-epimerase Phyre2 PDB 1f6d chain A Region: 28 - 349 Aligned: 314 Modelled: 321 Confidence: 98.6% Identity: 10% Fold: UDP-Glycosyltransferase/glycogen phosphorylase Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase Family: UDP-N-acetylglucosamine 2-epimerase Phyre2 PDB 3dzc chain A Region: 27 - 349 Aligned: 315 Modelled: 323 Confidence: 98.4% Identity: 12% PDB header:isomerase Chain: A: PDB Molecule:udp-n-acetylglucosamine 2-epimerase; PDBTitle: 2.35 angstrom resolution structure of wecb (vc0917), a udp-n-2 acetylglucosamine 2-epimerase from vibrio cholerae. Phyre2 PDB 2xcu chain C Region: 17 - 348 Aligned: 298 Modelled: 332 Confidence: 97.8% Identity: 11% PDB header:transferase Chain: C: PDB Molecule:3-deoxy-d-manno-2-octulosonic acid transferase; PDBTitle: membrane-embedded monofunctional glycosyltransferase waaa of aquifex2 aeolicus, comlex with cmp Phyre2 PDB 3hbm chain A Region: 28 - 307 Aligned: 245 Modelled: 279 Confidence: 97.3% Identity: 12% PDB header:hydrolase Chain: A: PDB Molecule:udp-sugar hydrolase; PDBTitle: crystal structure of pseg from campylobacter jejuni Phyre2 PDB 2vsn chain B Region: 105 - 311 Aligned: 198 Modelled: 207 Confidence: 97.2% Identity: 9% PDB header:transferase Chain: B: PDB Molecule:xcogt; PDBTitle: structure and topological arrangement of an o-glcnac2 transferase homolog: insight into molecular control of3 intracellular glycosylation Phyre2 PDB 1pn3 chain A Region: 29 - 349 Aligned: 309 Modelled: 321 Confidence: 97.1% Identity: 11% Fold: UDP-Glycosyltransferase/glycogen phosphorylase Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase Family: Gtf glycosyltransferase Phyre2 PDB 3c4v chain B Region: 29 - 349 Aligned: 312 Modelled: 321 Confidence: 96.7% Identity: 15% PDB header:transferase Chain: B: PDB Molecule:predicted glycosyltransferases; PDBTitle: structure of the retaining glycosyltransferase msha:the2 first step in mycothiol biosynthesis. organism:3 corynebacterium glutamicum : complex with udp and 1l-ins-1-4 p. Phyre2 PDB 2o6l chain A Region: 189 - 349 Aligned: 148 Modelled: 161 Confidence: 96.3% Identity: 16% PDB header:transferase Chain: A: PDB Molecule:udp-glucuronosyltransferase 2b7; PDBTitle: crystal structure of the udp-glucuronic acid binding domain2 of the human drug metabolizing udp-glucuronosyltransferase3 2b7 Phyre2 PDB 2gej chain A Region: 29 - 306 Aligned: 264 Modelled: 269 Confidence: 96.1% Identity: 13% PDB header:transferase Chain: A: PDB Molecule:phosphatidylinositol mannosyltransferase (pima); PDBTitle: crystal structure of phosphatidylinositol mannosyltransferase (pima)2 from mycobacterium smegmatis in complex with gdp-man Phyre2 PDB 2xmp chain B Region: 178 - 349 Aligned: 162 Modelled: 172 Confidence: 95.9% Identity: 10% PDB header:sugar binding protein Chain: B: PDB Molecule:trehalose-synthase tret; PDBTitle: crystal structure of trehalose synthase tret mutant e326a2 from p.horishiki in complex with udp Phyre2 PDB 3oth chain B Region: 28 - 349 Aligned: 294 Modelled: 306 Confidence: 95.5% Identity: 14% PDB header:transferase/antibiotic Chain: B: PDB Molecule:calg1; PDBTitle: crystal structure of calg1, calicheamicin glycostyltransferase, tdp2 and calicheamicin alpha3i bound form Phyre2 PDB 3oka chain A Region: 28 - 349 Aligned: 310 Modelled: 321 Confidence: 95.3% Identity: 13% PDB header:transferase Chain: A: PDB Molecule:gdp-mannose-dependent alpha-(1-6)-phosphatidylinositol PDBTitle: crystal structure of corynebacterium glutamicum pimb' in complex with2 gdp-man (triclinic crystal form) Phyre2 PDB 1rrv chain A Region: 29 - 348 Aligned: 307 Modelled: 318 Confidence: 95.3% Identity: 13% Fold: UDP-Glycosyltransferase/glycogen phosphorylase Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase Family: Gtf glycosyltransferase Phyre2 PDB 1f0k chain A Region: 28 - 306 Aligned: 265 Modelled: 269 Confidence: 95.3% Identity: 9% Fold: UDP-Glycosyltransferase/glycogen phosphorylase Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase Family: Peptidoglycan biosynthesis glycosyltransferase MurG Phyre2 PDB 2g8l chain A domain 1 Region: 2 - 80 Aligned: 70 Modelled: 69 Confidence: 82.5% Identity: 9% Fold: AF1104-like Superfamily: AF1104-like Family: AF1104-like Phyre2 1 c3tovB_ 2 d1pswa_ 3 c2h1fB_ 4 d1v4va_ 5 c3ot5D_ 6 d1o6ca_ 7 d1f6da_ 8 c3dzcA_ 9 c2xcuC_ 10 c3hbmA_ 11 c2vsnB_ 12 d1pn3a_ 13 c3c4vB_ 14 c2o6lA_ 15 c2gejA_ 16 c2xmpB_ 17 c3othB_ 18 c3okaA_ 19 d1rrva_ 20 d1f0ka_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 d2g8la1 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3tovB_ 100.0 14 PDB header:transferase Chain: B: PDB Molecule:glycosyl transferase family 9; PDBTitle: the crystal structure of the glycosyl transferase family 9 from2 veillonella parvula dsm 2008 2 d1pswa_ 100.0 13 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:ADP-heptose LPS heptosyltransferase II 3 c2h1fB_ 100.0 12 PDB header:transferase Chain: B: PDB Molecule:lipopolysaccharide heptosyltransferase-1; PDBTitle: e. coli heptosyltransferase waac with adp 4 d1v4va_ 99.2 12 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDP-N-acetylglucosamine 2-epimerase 5 c3ot5D_ 99.1 11 PDB header:isomerase Chain: D: PDB Molecule:udp-n-acetylglucosamine 2-epimerase; PDBTitle: 2.2 angstrom resolution crystal structure of putative udp-n-2 acetylglucosamine 2-epimerase from listeria monocytogenes 6 d1o6ca_ 98.6 10 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDP-N-acetylglucosamine 2-epimerase 7 d1f6da_ 98.6 10 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDP-N-acetylglucosamine 2-epimerase 8 c3dzcA_ 98.4 12 PDB header:isomerase Chain: A: PDB Molecule:udp-n-acetylglucosamine 2-epimerase; PDBTitle: 2.35 angstrom resolution structure of wecb (vc0917), a udp-n-2 acetylglucosamine 2-epimerase from vibrio cholerae. 9 c2xcuC_ 97.8 11 PDB header:transferase Chain: C: PDB Molecule:3-deoxy-d-manno-2-octulosonic acid transferase; PDBTitle: membrane-embedded monofunctional glycosyltransferase waaa of aquifex2 aeolicus, comlex with cmp 10 c3hbmA_ 97.3 12 PDB header:hydrolase Chain: A: PDB Molecule:udp-sugar hydrolase; PDBTitle: crystal structure of pseg from campylobacter jejuni 11 c2vsnB_ 97.2 9 PDB header:transferase Chain: B: PDB Molecule:xcogt; PDBTitle: structure and topological arrangement of an o-glcnac2 transferase homolog: insight into molecular control of3 intracellular glycosylation 12 d1pn3a_ 97.1 11 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Gtf glycosyltransferase 13 c3c4vB_ 96.7 15 PDB header:transferase Chain: B: PDB Molecule:predicted glycosyltransferases; PDBTitle: structure of the retaining glycosyltransferase msha:the2 first step in mycothiol biosynthesis. organism:3 corynebacterium glutamicum : complex with udp and 1l-ins-1-4 p. 14 c2o6lA_ 96.3 16 PDB header:transferase Chain: A: PDB Molecule:udp-glucuronosyltransferase 2b7; PDBTitle: crystal structure of the udp-glucuronic acid binding domain2 of the human drug metabolizing udp-glucuronosyltransferase3 2b7 15 c2gejA_ 96.1 13 PDB header:transferase Chain: A: PDB Molecule:phosphatidylinositol mannosyltransferase (pima); PDBTitle: crystal structure of phosphatidylinositol mannosyltransferase (pima)2 from mycobacterium smegmatis in complex with gdp-man 16 c2xmpB_ 95.9 10 PDB header:sugar binding protein Chain: B: PDB Molecule:trehalose-synthase tret; PDBTitle: crystal structure of trehalose synthase tret mutant e326a2 from p.horishiki in complex with udp 17 c3othB_ 95.5 14 PDB header:transferase/antibiotic Chain: B: PDB Molecule:calg1; PDBTitle: crystal structure of calg1, calicheamicin glycostyltransferase, tdp2 and calicheamicin alpha3i bound form 18 c3okaA_ 95.3 13 PDB header:transferase Chain: A: PDB Molecule:gdp-mannose-dependent alpha-(1-6)-phosphatidylinositol PDBTitle: crystal structure of corynebacterium glutamicum pimb' in complex with2 gdp-man (triclinic crystal form) 19 d1rrva_ 95.3 13 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Gtf glycosyltransferase 20 d1f0ka_ 95.3 9 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Peptidoglycan biosynthesis glycosyltransferase MurG 21 c2x6rA_ not modelled 95.2 10 PDB header:isomerase Chain: A: PDB Molecule:trehalose-synthase tret; PDBTitle: crystal structure of trehalose synthase tret from p.2 horikoshi produced by soaking in trehalose 22 c3iaaB_ not modelled 95.2 15 PDB header:transferase Chain: B: PDB Molecule:calg2; PDBTitle: crystal structure of calg2, calicheamicin glycosyltransferase, tdp2 bound form 23 c3pe3D_ not modelled 95.1 11 PDB header:transferase Chain: D: PDB Molecule:udp-n-acetylglucosamine--peptide n- PDBTitle: structure of human o-glcnac transferase and its complex with a peptide2 substrate 24 c2r60A_ not modelled 95.1 14 PDB header:transferase Chain: A: PDB Molecule:glycosyl transferase, group 1; PDBTitle: structure of apo sucrose phosphate synthase (sps) of2 halothermothrix orenii 25 c2jjmH_ not modelled 94.1 11 PDB header:transferase Chain: H: PDB Molecule:glycosyl transferase, group 1 family protein; PDBTitle: crystal structure of a family gt4 glycosyltransferase from2 bacillus anthracis orf ba1558. 26 c3q3hA_ not modelled 91.7 8 PDB header:transferase Chain: A: PDB Molecule:hmw1c-like glycosyltransferase; PDBTitle: crystal structure of the actinobacillus pleuropneumoniae hmw1c2 glycosyltransferase in complex with udp-glc 27 d2c1xa1 not modelled 91.1 9 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDPGT-like 28 c3qhpB_ not modelled 90.9 12 PDB header:transferase Chain: B: PDB Molecule:type 1 capsular polysaccharide biosynthesis protein j PDBTitle: crystal structure of the catalytic domain of cholesterol-alpha-2 glucosyltransferase from helicobacter pylori 29 c2q6vA_ not modelled 90.2 14 PDB header:transferase Chain: A: PDB Molecule:glucuronosyltransferase gumk; PDBTitle: crystal structure of gumk in complex with udp 30 d2f9fa1 not modelled 90.1 16 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Glycosyl transferases group 1 31 c3ehdA_ not modelled 89.4 28 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized conserved protein; PDBTitle: crystal structure of conserved protein from enterococcus faecalis v583 32 c2x0dA_ not modelled 89.3 11 PDB header:transferase Chain: A: PDB Molecule:wsaf; PDBTitle: apo structure of wsaf 33 d1o6da_ not modelled 88.6 8 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YbeA-like 34 d1vh0a_ not modelled 88.1 8 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YbeA-like 35 c2khzB_ not modelled 87.4 18 PDB header:nuclear protein Chain: B: PDB Molecule:c-myc-responsive protein rcl; PDBTitle: solution structure of rcl 36 c3d0qB_ not modelled 87.4 11 PDB header:transferase Chain: B: PDB Molecule:protein calg3; PDBTitle: crystal structure of calg3 from micromonospora echinospora determined2 in space group i222 37 d1to0a_ not modelled 87.2 10 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YbeA-like 38 c2p6pB_ not modelled 86.7 12 PDB header:transferase Chain: B: PDB Molecule:glycosyl transferase; PDBTitle: x-ray crystal structure of c-c bond-forming dtdp-d-olivose-transferase2 urdgt2 39 c2iyaB_ not modelled 86.1 10 PDB header:transferase Chain: B: PDB Molecule:oleandomycin glycosyltransferase; PDBTitle: the crystal structure of macrolide glycosyltransferases: a2 blueprint for antibiotic engineering 40 d2f62a1 not modelled 85.8 32 Fold:Flavodoxin-like Superfamily:N-(deoxy)ribosyltransferase-like Family:N-deoxyribosyltransferase 41 c3ia7A_ not modelled 85.3 11 PDB header:transferase Chain: A: PDB Molecule:calg4; PDBTitle: crystal structure of calg4, the calicheamicin glycosyltransferase 42 d1ns5a_ not modelled 84.7 7 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YbeA-like 43 d1iira_ not modelled 84.6 10 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Gtf glycosyltransferase 44 c3oy2A_ not modelled 84.4 9 PDB header:viral protein,transferase Chain: A: PDB Molecule:glycosyltransferase b736l; PDBTitle: crystal structure of a putative glycosyltransferase from paramecium2 bursaria chlorella virus ny2a 45 d2g8la1 82.5 9 Fold:AF1104-like Superfamily:AF1104-like Family:AF1104-like 46 c3gjzB_ not modelled 81.6 13 PDB header:immune system Chain: B: PDB Molecule:microcin immunity protein mccf; PDBTitle: crystal structure of microcin immunity protein mccf from bacillus2 anthracis str. ames 47 d1s2da_ not modelled 81.4 19 Fold:Flavodoxin-like Superfamily:N-(deoxy)ribosyltransferase-like Family:N-deoxyribosyltransferase 48 d1f8ya_ not modelled 81.2 22 Fold:Flavodoxin-like Superfamily:N-(deoxy)ribosyltransferase-like Family:N-deoxyribosyltransferase 49 c2iyfA_ not modelled 78.5 8 PDB header:transferase Chain: A: PDB Molecule:oleandomycin glycosyltransferase; PDBTitle: the crystal structure of macrolide glycosyltransferases: a2 blueprint for antibiotic engineering 50 d1to6a_ not modelled 78.0 16 Fold:Glycerate kinase I Superfamily:Glycerate kinase I Family:Glycerate kinase I 51 c3l7mC_ not modelled 76.2 16 PDB header:structural protein Chain: C: PDB Molecule:teichoic acid biosynthesis protein f; PDBTitle: structure of the wall teichoic acid polymerase tagf, h548a 52 d1w6ta1 not modelled 75.4 16 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:Enolase 53 c2qzsA_ not modelled 73.3 11 PDB header:transferase Chain: A: PDB Molecule:glycogen synthase; PDBTitle: crystal structure of wild-type e.coli gs in complex with adp2 and glucose(wtgsb) 54 d2bisa1 not modelled 73.2 12 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Glycosyl transferases group 1 55 d2iw1a1 not modelled 72.4 14 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Glycosyl transferases group 1 56 c3uj2C_ not modelled 69.1 20 PDB header:lyase Chain: C: PDB Molecule:enolase 1; PDBTitle: crystal structure of an enolase from anaerostipes caccae (efi target2 efi-502054) with bound mg and sulfate 57 d1iyxa1 not modelled 66.5 19 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:Enolase 58 c3pdiG_ not modelled 66.0 11 PDB header:protein binding Chain: G: PDB Molecule:nitrogenase mofe cofactor biosynthesis protein nife; PDBTitle: precursor bound nifen 59 c2h31A_ not modelled 65.0 8 PDB header:ligase, lyase Chain: A: PDB Molecule:multifunctional protein ade2; PDBTitle: crystal structure of human paics, a bifunctional carboxylase and2 synthetase in purine biosynthesis 60 c2fymA_ not modelled 63.3 19 PDB header:lyase Chain: A: PDB Molecule:enolase; PDBTitle: crystal structure of e. coli enolase complexed with the2 minimal binding segment of rnase e. 61 c3cwcB_ not modelled 62.0 21 PDB header:transferase Chain: B: PDB Molecule:putative glycerate kinase 2; PDBTitle: crystal structure of putative glycerate kinase 2 from salmonella2 typhimurium lt2 62 d2fyma1 not modelled 59.3 18 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:Enolase 63 c3rggD_ not modelled 56.6 13 PDB header:lyase Chain: D: PDB Molecule:phosphoribosylaminoimidazole carboxylase, pure protein; PDBTitle: crystal structure of treponema denticola pure bound to air 64 d1ybha1 not modelled 55.6 10 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 65 d1rzua_ not modelled 55.5 13 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Glycosyl transferases group 1 66 d2acva1 not modelled 54.4 8 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDPGT-like 67 c3tqpA_ not modelled 54.3 17 PDB header:lyase Chain: A: PDB Molecule:enolase; PDBTitle: structure of an enolase (eno) from coxiella burnetii 68 c2jzcA_ not modelled 52.8 12 PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine transferase subunit PDBTitle: nmr solution structure of alg13: the sugar donor subunit of2 a yeast n-acetylglucosamine transferase. northeast3 structural genomics consortium target yg1 69 d1m1na_ not modelled 50.7 6 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 70 c2xdqB_ not modelled 49.7 11 PDB header:oxidoreductase Chain: B: PDB Molecule:light-independent protochlorophyllide reductase subunit b; PDBTitle: dark operative protochlorophyllide oxidoreductase (chln-2 chlb)2 complex 71 c3l8mA_ not modelled 49.0 16 PDB header:transferase Chain: A: PDB Molecule:probable thiamine pyrophosphokinase; PDBTitle: crystal structure of a probable thiamine pyrophosphokinase2 from staphylococcus saprophyticus subsp. saprophyticus.3 northeast structural genomics consortium target id syr86 72 c2h9aA_ not modelled 40.8 13 PDB header:oxidoreductase Chain: A: PDB Molecule:carbon monoxide dehydrogenase corrinoid/iron- PDBTitle: corrinoid iron-sulfur protein 73 c3k94A_ not modelled 40.2 17 PDB header:transferase Chain: A: PDB Molecule:thiamin pyrophosphokinase; PDBTitle: crystal structure of thiamin pyrophosphokinase from geobacillus2 thermodenitrificans, northeast structural genomics consortium target3 gtr2 74 d1qh8a_ not modelled 38.9 10 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 75 c3qtpB_ not modelled 38.8 14 PDB header:lyase Chain: B: PDB Molecule:enolase 1; PDBTitle: crystal structure analysis of entamoeba histolytica enolase 76 c2axqA_ not modelled 36.4 12 PDB header:oxidoreductase Chain: A: PDB Molecule:saccharopine dehydrogenase; PDBTitle: apo histidine-tagged saccharopine dehydrogenase (l-glu2 forming) from saccharomyces cerevisiae 77 d2ptza1 not modelled 33.3 17 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:Enolase 78 c3qn3B_ not modelled 32.6 17 PDB header:lyase Chain: B: PDB Molecule:enolase; PDBTitle: phosphopyruvate hydratase from campylobacter jejuni. 79 c3ouzA_ not modelled 32.3 13 PDB header:ligase Chain: A: PDB Molecule:biotin carboxylase; PDBTitle: crystal structure of biotin carboxylase-adp complex from campylobacter2 jejuni 80 d1w3ia_ not modelled 32.2 7 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 81 d1z6na1 not modelled 31.8 12 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 82 d2bfwa1 not modelled 31.6 10 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Glycosyl transferases group 1 83 d1t9ba1 not modelled 31.2 7 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 84 c3cq9C_ not modelled 31.2 14 PDB header:transferase Chain: C: PDB Molecule:uncharacterized protein lp_1622; PDBTitle: crystal structure of the lp_1622 protein from lactobacillus2 plantarum. northeast structural genomics consortium target3 lpr114 85 c3lm8D_ not modelled 30.4 21 PDB header:transferase Chain: D: PDB Molecule:thiamine pyrophosphokinase; PDBTitle: crystal structure of thiamine pyrophosphokinase from2 bacillus subtilis, northeast structural genomics consortium3 target sr677 86 c3afoB_ not modelled 28.9 18 PDB header:transferase Chain: B: PDB Molecule:nadh kinase pos5; PDBTitle: crystal structure of yeast nadh kinase complexed with nadh 87 c3cf4G_ not modelled 28.0 16 PDB header:oxidoreductase Chain: G: PDB Molecule:acetyl-coa decarboxylase/synthase epsilon subunit; PDBTitle: structure of the codh component of the m. barkeri acds complex 88 d2ez9a1 not modelled 28.0 13 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 89 c3aerB_ not modelled 26.7 11 PDB header:oxidoreductase Chain: B: PDB Molecule:light-independent protochlorophyllide reductase subunit b; PDBTitle: structure of the light-independent protochlorophyllide reductase2 catalyzing a key reduction for greening in the dark 90 d1m1nb_ not modelled 26.2 13 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 91 c3d3aA_ not modelled 26.0 6 PDB header:hydrolase Chain: A: PDB Molecule:beta-galactosidase; PDBTitle: crystal structure of a beta-galactosidase from bacteroides2 thetaiotaomicron 92 c2j0wA_ not modelled 25.5 22 PDB header:transferase Chain: A: PDB Molecule:lysine-sensitive aspartokinase 3; PDBTitle: crystal structure of e. coli aspartokinase iii in complex2 with aspartate and adp (r-state) 93 c1zrsB_ not modelled 25.3 14 PDB header:hydrolase Chain: B: PDB Molecule:hypothetical protein; PDBTitle: wild-type ld-carboxypeptidase 94 c3b8kA_ not modelled 24.9 14 PDB header:transferase Chain: A: PDB Molecule:dihydrolipoyllysine-residue acetyltransferase; PDBTitle: structure of the truncated human dihydrolipoyl2 acetyltransferase (e2) 95 d2fgea3 not modelled 24.5 16 Fold:LuxS/MPP-like metallohydrolase Superfamily:LuxS/MPP-like metallohydrolase Family:MPP-like 96 c2hlhA_ not modelled 24.1 14 PDB header:transferase Chain: A: PDB Molecule:nodulation fucosyltransferase; PDBTitle: crystal structure of fucosyltransferase nodz from bradyrhizobium 97 c3aerC_ not modelled 24.0 6 PDB header:oxidoreductase Chain: C: PDB Molecule:light-independent protochlorophyllide reductase subunit n; PDBTitle: structure of the light-independent protochlorophyllide reductase2 catalyzing a key reduction for greening in the dark 98 d2h1qa1 not modelled 23.5 9 Fold:PLP-dependent transferase-like Superfamily:Dhaf3308-like Family:Dhaf3308-like 99 c3thdD_ not modelled 23.3 6 PDB header:hydrolase Chain: D: PDB Molecule:beta-galactosidase; PDBTitle: crystal structure of human beta-galactosidase in complex with 1-2 deoxygalactonojirimycin 100 c3hbjA_ not modelled 23.2 10 PDB header:transferase Chain: A: PDB Molecule:flavonoid 3-o-glucosyltransferase; PDBTitle: structure of ugt78g1 complexed with udp 101 d2jdid3 not modelled 23.1 8 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 102 d2djia1 not modelled 22.9 9 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 103 c3ihkC_ not modelled 22.8 15 PDB header:transferase Chain: C: PDB Molecule:thiamin pyrophosphokinase; PDBTitle: crystal structure of thiamin pyrophosphokinase from2 s.mutans, northeast structural genomics consortium target3 smr83 104 c3otrC_ not modelled 22.0 15 PDB header:lyase Chain: C: PDB Molecule:enolase; PDBTitle: 2.75 angstrom crystal structure of enolase 1 from toxoplasma gondii 105 d1miob_ not modelled 21.8 17 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 106 c3rhzB_ not modelled 21.3 16 PDB header:transferase Chain: B: PDB Molecule:nucleotide sugar synthetase-like protein; PDBTitle: structure and functional analysis of a new subfamily of2 glycosyltransferases required for glycosylation of serine-rich3 streptococcal adhesions

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0