Phyre 2 Results for P39279

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Email | l.a.kelley@imperial.ac.uk
Description | P39279
Date | Thu Jan 5 11:58:48 GMT 2012
Unique Job ID | 6d9ca16b82119ff1

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c3fggA_
Top template information
PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein bce2196; PDBTitle: crystal structure of putative ecf-type sigma factor negative effector2 from bacillus cereus
Confidence and coverage
Confidence: | 32.7% | Coverage: | 4%
13 residues ( 4% of your sequence) have been modelled with 32.7% confidence by the single highest scoring template.
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3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

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Sequence |  | M | A | I | S | I | K | G | V | N | T | G | V | I | R | K | S | N | N | F | I | A | L | A | L | K | I | K | E | P | R | N | K | E | S | L | F | F | M | S | V | M | E | L | R | D | L | L | I | A | L | E | S | R | L | H | Q | K | H | K | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | D | A | A | A | H | L | Q | Y | E | Q | A | R | D | K | V | I | K | K | M | A | E | N | I | P | E | I | L | V | D | E | L | K | N | A | D | I | N | R | R | V | N | T | L | E | L | T | D | N | Q | G | E | N | L | T | F | V | L | T | L | H
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | D | G | S | K | C | E | L | V | V | N | E | L | Q | I | E | M | L | A | R | A | I | I | H | A | I | N | N | A | E | M | R | E | L | A | L | R | I | T | S | L | L | D | F | L | P | L | Y | D | V | D | C | Q | D | N | G | N | L | E | Y | D
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | T | Y | S | Q | P | E | W | K | H | N | L | F | D | H | Y | L | A | V | L | Y | R | F | K | D | E | S | G | K | E | Q | F | S | G | A | V | V | K | T | R | E | A | T | P | G | K | E | I | E | A | I | T | R | R | M | L | D | F | S | P | R
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  | ? |  |  | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | .
Sequence |  | L | K | K | L | A | G | V | P | C | Q | V | Y | V | R | T | V | A | A | N | N | A | Q | P | L | T | Q | D | Q | C | L | R | A | L | H | H | L | R | V | Q | S | T | S | K | T | A | P | Q | A | K
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c3fggA_ |

### PDB 3fgg chain A

Region: 174 - 186
Aligned: 13
Modelled: 13
Confidence: 32.7%
Identity: 46%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein bce2196;
PDBTitle: crystal structure of putative ecf-type sigma factor negative effector2 from bacillus cereus

Phyre2
2 |
| c1nw1A_ |

### PDB 1nw1 chain A

Region: 167 - 239
Aligned: 57
Modelled: 57
Confidence: 22.4%
Identity: 23%
PDB header:transferase
Chain: A: PDB Molecule:choline kinase (49.2 kd);
PDBTitle: crystal structure of choline kinase

Phyre2
3 |
| d1nw1a_ |

### PDB 1nw1 chain A

Region: 167 - 239
Aligned: 57
Modelled: 57
Confidence: 22.4%
Identity: 23%
Fold: Protein kinase-like (PK-like)
Superfamily: Protein kinase-like (PK-like)
Family: Choline kinase

Phyre2
4 |
| d1v5ma_ |

### PDB 1v5m chain A

Region: 98 - 147
Aligned: 47
Modelled: 50
Confidence: 21.7%
Identity: 26%
Fold: PH domain-like barrel
Superfamily: PH domain-like
Family: Pleckstrin-homology domain (PH domain)

Phyre2
5 |
| c3mesB_ |

### PDB 3mes chain B

Region: 167 - 211
Aligned: 45
Modelled: 45
Confidence: 17.9%
Identity: 16%
PDB header:transferase
Chain: B: PDB Molecule:choline kinase;
PDBTitle: crystal structure of choline kinase from cryptosporidium2 parvum iowa ii, cgd3_2030

Phyre2
6 |
| d1bbpa_ |

### PDB 1bbp chain A

Region: 197 - 235
Aligned: 39
Modelled: 39
Confidence: 14.0%
Identity: 23%
Fold: Lipocalins
Superfamily: Lipocalins
Family: Retinol binding protein-like

Phyre2
7 |
| c2hzqA_ |

### PDB 2hzq chain A

Region: 197 - 238
Aligned: 42
Modelled: 42
Confidence: 13.8%
Identity: 17%
PDB header:transport protein
Chain: A: PDB Molecule:apolipoprotein d;
PDBTitle: crystal structure of human apolipoprotein d (apod) in2 complex with progesterone

Phyre2
8 |
| d2ox7a1 |

### PDB 2ox7 chain A domain 1

Region: 202 - 219
Aligned: 18
Modelled: 18
Confidence: 13.7%
Identity: 33%
Fold: YopX-like
Superfamily: YopX-like
Family: YopX-like

Phyre2
9 |
| c3ha4C_ |

### PDB 3ha4 chain C

Region: 212 - 236
Aligned: 25
Modelled: 25
Confidence: 13.4%
Identity: 24%
PDB header:unknown function
Chain: C: PDB Molecule:mix1;
PDBTitle: crystal structure of the type one membrane protein mix1 from2 leishmania

Phyre2
10 |
| d1gkab_ |

### PDB 1gka chain B

Region: 197 - 237
Aligned: 40
Modelled: 41
Confidence: 12.7%
Identity: 13%
Fold: Lipocalins
Superfamily: Lipocalins
Family: Retinol binding protein-like

Phyre2
11 |
| d1axia_ |

### PDB 1axi chain A

Region: 146 - 208
Aligned: 48
Modelled: 63
Confidence: 12.3%
Identity: 27%
Fold: 4-helical cytokines
Superfamily: 4-helical cytokines
Family: Long-chain cytokines

Phyre2
12 |
| d2b7ea1 |

### PDB 2b7e chain A domain 1

Region: 183 - 196
Aligned: 14
Modelled: 14
Confidence: 11.2%
Identity: 43%
Fold: Another 3-helical bundle
Superfamily: FF domain
Family: FF domain

Phyre2
13 |
| c1zxjB_ |

### PDB 1zxj chain B

Region: 188 - 237
Aligned: 43
Modelled: 50
Confidence: 10.7%
Identity: 21%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein mg377 homolog;
PDBTitle: crystal structure of the hypthetical mycoplasma protein,2 mpn555

Phyre2
14 |
| c1h4tD_ |

### PDB 1h4t chain D

Region: 193 - 277
Aligned: 77
Modelled: 83
Confidence: 10.4%
Identity: 25%
PDB header:aminoacyl-trna synthetase
Chain: D: PDB Molecule:prolyl-trna synthetase;
PDBTitle: prolyl-trna synthetase from thermus thermophilus complexed2 with l-proline

Phyre2
15 |
| d2p84a1 |

### PDB 2p84 chain A domain 1

Region: 202 - 217
Aligned: 16
Modelled: 16
Confidence: 10.0%
Identity: 31%
Fold: YopX-like
Superfamily: YopX-like
Family: YopX-like

Phyre2
16 |
| c2qyzA_ |

### PDB 2qyz chain A

Region: 202 - 217
Aligned: 16
Modelled: 16
Confidence: 9.9%
Identity: 38%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of the uncharacterized protein ctc02137 from2 clostridium tetani e88

Phyre2
17 |
| d1osce_ |

### PDB 1osc chain E

Region: 199 - 261
Aligned: 52
Modelled: 63
Confidence: 9.0%
Identity: 13%
Fold: Ferredoxin-like
Superfamily: GlnB-like
Family: Divalent ion tolerance proteins CutA (CutA1)

Phyre2
18 |
| d1pm1x_ |

### PDB 1pm1 chain X

Region: 197 - 244
Aligned: 47
Modelled: 48
Confidence: 8.8%
Identity: 13%
Fold: Lipocalins
Superfamily: Lipocalins
Family: Retinol binding protein-like

Phyre2
19 |
| c3c8uA_ |

### PDB 3c8u chain A

Region: 80 - 115
Aligned: 35
Modelled: 36
Confidence: 8.7%
Identity: 14%
PDB header:transferase
Chain: A: PDB Molecule:fructokinase;
PDBTitle: crystal structure of putative fructose transport system kinase2 (yp_612366.1) from silicibacter sp. tm1040 at 1.95 a resolution

Phyre2
20 |
| d1whra_ |

### PDB 1whr chain A

Region: 137 - 219
Aligned: 76
Modelled: 83
Confidence: 8.0%
Identity: 14%
Fold: IF3-like
Superfamily: R3H domain
Family: R3H domain

Phyre2
21 |
22 |
23 |
24 |
25 |
26 |
27 |
28 |
29 |
30 |
31 |
32 |
33 |
34 |
35 |
36 |
37 |
38 |
39 |
40 |
41 |
42 |
43 |
44 |
45 |
46 |
47 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c3fggA_ |
|  | 32.7 | 46 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein bce2196; PDBTitle: crystal structure of putative ecf-type sigma factor negative effector2 from bacillus cereus
2 | c1nw1A_ |
|  | 22.4 | 23 | PDB header:transferase Chain: A: PDB Molecule:choline kinase (49.2 kd); PDBTitle: crystal structure of choline kinase
3 | d1nw1a_ |
|  | 22.4 | 23 | Fold:Protein kinase-like (PK-like) Superfamily:Protein kinase-like (PK-like) Family:Choline kinase
4 | d1v5ma_ |
|  | 21.7 | 26 | Fold:PH domain-like barrel Superfamily:PH domain-like Family:Pleckstrin-homology domain (PH domain)
5 | c3mesB_ |
|  | 17.9 | 16 | PDB header:transferase Chain: B: PDB Molecule:choline kinase; PDBTitle: crystal structure of choline kinase from cryptosporidium2 parvum iowa ii, cgd3_2030
6 | d1bbpa_ |
|  | 14.0 | 23 | Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like
7 | c2hzqA_ |
|  | 13.8 | 17 | PDB header:transport protein Chain: A: PDB Molecule:apolipoprotein d; PDBTitle: crystal structure of human apolipoprotein d (apod) in2 complex with progesterone
8 | d2ox7a1 |
|  | 13.7 | 33 | Fold:YopX-like Superfamily:YopX-like Family:YopX-like
9 | c3ha4C_ |
|  | 13.4 | 24 | PDB header:unknown function Chain: C: PDB Molecule:mix1; PDBTitle: crystal structure of the type one membrane protein mix1 from2 leishmania
10 | d1gkab_ |
|  | 12.7 | 13 | Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like
11 | d1axia_ |
|  | 12.3 | 27 | Fold:4-helical cytokines Superfamily:4-helical cytokines Family:Long-chain cytokines
12 | d2b7ea1 |
|  | 11.2 | 43 | Fold:Another 3-helical bundle Superfamily:FF domain Family:FF domain
13 | c1zxjB_ |
|  | 10.7 | 21 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein mg377 homolog; PDBTitle: crystal structure of the hypthetical mycoplasma protein,2 mpn555
14 | c1h4tD_ |
|  | 10.4 | 25 | PDB header:aminoacyl-trna synthetase Chain: D: PDB Molecule:prolyl-trna synthetase; PDBTitle: prolyl-trna synthetase from thermus thermophilus complexed2 with l-proline
15 | d2p84a1 |
|  | 10.0 | 31 | Fold:YopX-like Superfamily:YopX-like Family:YopX-like
16 | c2qyzA_ |
|  | 9.9 | 38 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the uncharacterized protein ctc02137 from2 clostridium tetani e88
17 | d1osce_ |
|  | 9.0 | 13 | Fold:Ferredoxin-like Superfamily:GlnB-like Family:Divalent ion tolerance proteins CutA (CutA1)
18 | d1pm1x_ |
|  | 8.8 | 13 | Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like
19 | c3c8uA_ |
|  | 8.7 | 14 | PDB header:transferase Chain: A: PDB Molecule:fructokinase; PDBTitle: crystal structure of putative fructose transport system kinase2 (yp_612366.1) from silicibacter sp. tm1040 at 1.95 a resolution
20 | d1whra_ |
|  | 8.0 | 14 | Fold:IF3-like Superfamily:R3H domain Family:R3H domain
21 | c1wqdA_ |
| not modelled | 7.9 | 46 | PDB header:toxin Chain: A: PDB Molecule:omtx2; PDBTitle: an unusual fold for potassium channel blockers: nmr2 structure of three toxins from the scorpion opisthacanthus3 madagascariensis
22 | c3fwlA_ |
| not modelled | 7.9 | 21 | PDB header:transferase, hydrolase Chain: A: PDB Molecule:penicillin-binding protein 1b; PDBTitle: crystal structure of the full-length transglycosylase pbp1b2 from escherichia coli
23 | c3lx6B_ |
| not modelled | 7.7 | 21 | PDB header:transferase Chain: B: PDB Molecule:cytosine-specific methyltransferase; PDBTitle: structure of probable cytosine-specific methyltransferase from2 shigella flexneri
24 | d1hgua_ |
| not modelled | 7.4 | 17 | Fold:4-helical cytokines Superfamily:4-helical cytokines Family:Long-chain cytokines
25 | c1wqcA_ |
| not modelled | 7.3 | 46 | PDB header:toxin Chain: A: PDB Molecule:omtx1; PDBTitle: an unusual fold for potassium channel blockers : nmr2 structure of three toxins from the scorpion opisthacanthus3 madagascariensis
26 | d1v65a_ |
| not modelled | 7.2 | 25 | Fold:KRAB domain (Kruppel-associated box) Superfamily:KRAB domain (Kruppel-associated box) Family:KRAB domain (Kruppel-associated box)
27 | d1mg4a_ |
| not modelled | 7.2 | 40 | Fold:beta-Grasp (ubiquitin-like) Superfamily:Doublecortin (DC) Family:Doublecortin (DC)
28 | c2l23A_ |
| not modelled | 7.0 | 58 | PDB header:transcription Chain: A: PDB Molecule:mediator of rna polymerase ii transcription subunit 25; PDBTitle: nmr structure of the acid (activator interacting domain) of the human2 mediator med25 protein
29 | c3rfrI_ |
| not modelled | 6.9 | 13 | PDB header:oxidoreductase Chain: I: PDB Molecule:pmob; PDBTitle: crystal structure of particulate methane monooxygenase (pmmo) from2 methylocystis sp. strain m
30 | d1m8na_ |
| not modelled | 6.6 | 46 | Fold:Single-stranded left-handed beta-helix Superfamily:An insect antifreeze protein Family:An insect antifreeze protein
31 | d1clvi_ |
| not modelled | 6.5 | 71 | Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Plant inhibitors of proteinases and amylases Family:Plant inhibitors of proteinases and amylases
32 | c3rgbA_ |
| not modelled | 6.3 | 19 | PDB header:oxidoreductase Chain: A: PDB Molecule:methane monooxygenase subunit b2; PDBTitle: crystal structure of particulate methane monooxygenase from2 methylococcus capsulatus (bath)
33 | c1yewI_ |
| not modelled | 6.3 | 19 | PDB header:oxidoreductase, membrane protein Chain: I: PDB Molecule:particulate methane monooxygenase, b subunit; PDBTitle: crystal structure of particulate methane monooxygenase
34 | c2qrvA_ |
| not modelled | 6.3 | 22 | PDB header:transferase/transferase regulator Chain: A: PDB Molecule:dna (cytosine-5)-methyltransferase 3a; PDBTitle: structure of dnmt3a-dnmt3l c-terminal domain complex
35 | c3dwlF_ |
| not modelled | 6.3 | 20 | PDB header:structural protein Chain: F: PDB Molecule:actin-related protein 2/3 complex subunit 4; PDBTitle: crystal structure of fission yeast arp2/3 complex lacking the arp22 subunit
36 | d1ewna_ |
| not modelled | 6.2 | 27 | Fold:FMT C-terminal domain-like Superfamily:FMT C-terminal domain-like Family:3-methyladenine DNA glycosylase (AAG, ANPG, MPG)
37 | c3chxE_ |
| not modelled | 6.0 | 12 | PDB header:membrane protein Chain: E: PDB Molecule:pmob; PDBTitle: crystal structure of methylosinus trichosporium ob3b2 particulate methane monooxygenase (pmmo)
38 | c2qrvC_ |
| not modelled | 5.9 | 20 | PDB header:transferase/transferase regulator Chain: C: PDB Molecule:dna (cytosine-5)-methyltransferase 3-like; PDBTitle: structure of dnmt3a-dnmt3l c-terminal domain complex
39 | d1wjpa2 |
| not modelled | 5.9 | 46 | Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2
40 | d1v7wa2 |
| not modelled | 5.8 | 13 | Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:Glycosyltransferase family 36 N-terminal domain
41 | d1n0sa_ |
| not modelled | 5.8 | 20 | Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like
42 | d1mjda_ |
| not modelled | 5.8 | 33 | Fold:beta-Grasp (ubiquitin-like) Superfamily:Doublecortin (DC) Family:Doublecortin (DC)
43 | d2axla1 |
| not modelled | 5.5 | 15 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:RecQ helicase DNA-binding domain-like
44 | d1e6ya1 |
| not modelled | 5.2 | 46 | Fold:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain Superfamily:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain Family:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain
45 | c3c5iD_ |
| not modelled | 5.2 | 16 | PDB header:transferase Chain: D: PDB Molecule:choline kinase; PDBTitle: crystal structure of plasmodium knowlesi choline kinase, pkh_134520
46 | c1ydiB_ |
| not modelled | 5.1 | 37 | PDB header:cell adhesion, structural protein Chain: B: PDB Molecule:alpha-actinin 4; PDBTitle: human vinculin head domain (vh1, 1-258) in complex with2 human alpha-actinin's vinculin-binding site (residues 731-3 760)
47 | c1zx3A_ |
| not modelled | 5.1 | 30 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ne0241; PDBTitle: structure of ne0241 protein of unknown function from nitrosomonas2 europaea

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0