Phyre 2 Results for P39279

Email | l.a.kelley@imperial.ac.uk
Description | P39279
Date | Thu Jan 5 11:58:48 GMT 2012
Unique Job ID | 6d9ca16b82119ff1

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c3fggA_ |
|  | 32.7 | 46 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein bce2196; PDBTitle: crystal structure of putative ecf-type sigma factor negative effector2 from bacillus cereus
2 | c1nw1A_ |
|  | 22.4 | 23 | PDB header:transferase Chain: A: PDB Molecule:choline kinase (49.2 kd); PDBTitle: crystal structure of choline kinase
3 | d1nw1a_ |
|  | 22.4 | 23 | Fold:Protein kinase-like (PK-like) Superfamily:Protein kinase-like (PK-like) Family:Choline kinase
4 | d1v5ma_ |
|  | 21.7 | 26 | Fold:PH domain-like barrel Superfamily:PH domain-like Family:Pleckstrin-homology domain (PH domain)
5 | c3mesB_ |
|  | 17.9 | 16 | PDB header:transferase Chain: B: PDB Molecule:choline kinase; PDBTitle: crystal structure of choline kinase from cryptosporidium2 parvum iowa ii, cgd3_2030
6 | d1bbpa_ |
|  | 14.0 | 23 | Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like
7 | c2hzqA_ |
|  | 13.8 | 17 | PDB header:transport protein Chain: A: PDB Molecule:apolipoprotein d; PDBTitle: crystal structure of human apolipoprotein d (apod) in2 complex with progesterone
8 | d2ox7a1 |
|  | 13.7 | 33 | Fold:YopX-like Superfamily:YopX-like Family:YopX-like
9 | c3ha4C_ |
|  | 13.4 | 24 | PDB header:unknown function Chain: C: PDB Molecule:mix1; PDBTitle: crystal structure of the type one membrane protein mix1 from2 leishmania
10 | d1gkab_ |
|  | 12.7 | 13 | Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like
11 | d1axia_ |
|  | 12.3 | 27 | Fold:4-helical cytokines Superfamily:4-helical cytokines Family:Long-chain cytokines
12 | d2b7ea1 |
|  | 11.2 | 43 | Fold:Another 3-helical bundle Superfamily:FF domain Family:FF domain
13 | c1zxjB_ |
|  | 10.7 | 21 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein mg377 homolog; PDBTitle: crystal structure of the hypthetical mycoplasma protein,2 mpn555
14 | c1h4tD_ |
|  | 10.4 | 25 | PDB header:aminoacyl-trna synthetase Chain: D: PDB Molecule:prolyl-trna synthetase; PDBTitle: prolyl-trna synthetase from thermus thermophilus complexed2 with l-proline
15 | d2p84a1 |
|  | 10.0 | 31 | Fold:YopX-like Superfamily:YopX-like Family:YopX-like
16 | c2qyzA_ |
|  | 9.9 | 38 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the uncharacterized protein ctc02137 from2 clostridium tetani e88
17 | d1osce_ |
|  | 9.0 | 13 | Fold:Ferredoxin-like Superfamily:GlnB-like Family:Divalent ion tolerance proteins CutA (CutA1)
18 | d1pm1x_ |
|  | 8.8 | 13 | Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like
19 | c3c8uA_ |
|  | 8.7 | 14 | PDB header:transferase Chain: A: PDB Molecule:fructokinase; PDBTitle: crystal structure of putative fructose transport system kinase2 (yp_612366.1) from silicibacter sp. tm1040 at 1.95 a resolution
20 | d1whra_ |
|  | 8.0 | 14 | Fold:IF3-like Superfamily:R3H domain Family:R3H domain
21 | c1wqdA_ |
| not modelled | 7.9 | 46 | PDB header:toxin Chain: A: PDB Molecule:omtx2; PDBTitle: an unusual fold for potassium channel blockers: nmr2 structure of three toxins from the scorpion opisthacanthus3 madagascariensis
22 | c3fwlA_ |
| not modelled | 7.9 | 21 | PDB header:transferase, hydrolase Chain: A: PDB Molecule:penicillin-binding protein 1b; PDBTitle: crystal structure of the full-length transglycosylase pbp1b2 from escherichia coli
23 | c3lx6B_ |
| not modelled | 7.7 | 21 | PDB header:transferase Chain: B: PDB Molecule:cytosine-specific methyltransferase; PDBTitle: structure of probable cytosine-specific methyltransferase from2 shigella flexneri
24 | d1hgua_ |
| not modelled | 7.4 | 17 | Fold:4-helical cytokines Superfamily:4-helical cytokines Family:Long-chain cytokines
25 | c1wqcA_ |
| not modelled | 7.3 | 46 | PDB header:toxin Chain: A: PDB Molecule:omtx1; PDBTitle: an unusual fold for potassium channel blockers : nmr2 structure of three toxins from the scorpion opisthacanthus3 madagascariensis
26 | d1v65a_ |
| not modelled | 7.2 | 25 | Fold:KRAB domain (Kruppel-associated box) Superfamily:KRAB domain (Kruppel-associated box) Family:KRAB domain (Kruppel-associated box)
27 | d1mg4a_ |
| not modelled | 7.2 | 40 | Fold:beta-Grasp (ubiquitin-like) Superfamily:Doublecortin (DC) Family:Doublecortin (DC)
28 | c2l23A_ |
| not modelled | 7.0 | 58 | PDB header:transcription Chain: A: PDB Molecule:mediator of rna polymerase ii transcription subunit 25; PDBTitle: nmr structure of the acid (activator interacting domain) of the human2 mediator med25 protein
29 | c3rfrI_ |
| not modelled | 6.9 | 13 | PDB header:oxidoreductase Chain: I: PDB Molecule:pmob; PDBTitle: crystal structure of particulate methane monooxygenase (pmmo) from2 methylocystis sp. strain m
30 | d1m8na_ |
| not modelled | 6.6 | 46 | Fold:Single-stranded left-handed beta-helix Superfamily:An insect antifreeze protein Family:An insect antifreeze protein
31 | d1clvi_ |
| not modelled | 6.5 | 71 | Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Plant inhibitors of proteinases and amylases Family:Plant inhibitors of proteinases and amylases
32 | c3rgbA_ |
| not modelled | 6.3 | 19 | PDB header:oxidoreductase Chain: A: PDB Molecule:methane monooxygenase subunit b2; PDBTitle: crystal structure of particulate methane monooxygenase from2 methylococcus capsulatus (bath)
33 | c1yewI_ |
| not modelled | 6.3 | 19 | PDB header:oxidoreductase, membrane protein Chain: I: PDB Molecule:particulate methane monooxygenase, b subunit; PDBTitle: crystal structure of particulate methane monooxygenase
34 | c2qrvA_ |
| not modelled | 6.3 | 22 | PDB header:transferase/transferase regulator Chain: A: PDB Molecule:dna (cytosine-5)-methyltransferase 3a; PDBTitle: structure of dnmt3a-dnmt3l c-terminal domain complex
35 | c3dwlF_ |
| not modelled | 6.3 | 20 | PDB header:structural protein Chain: F: PDB Molecule:actin-related protein 2/3 complex subunit 4; PDBTitle: crystal structure of fission yeast arp2/3 complex lacking the arp22 subunit
36 | d1ewna_ |
| not modelled | 6.2 | 27 | Fold:FMT C-terminal domain-like Superfamily:FMT C-terminal domain-like Family:3-methyladenine DNA glycosylase (AAG, ANPG, MPG)
37 | c3chxE_ |
| not modelled | 6.0 | 12 | PDB header:membrane protein Chain: E: PDB Molecule:pmob; PDBTitle: crystal structure of methylosinus trichosporium ob3b2 particulate methane monooxygenase (pmmo)
38 | c2qrvC_ |
| not modelled | 5.9 | 20 | PDB header:transferase/transferase regulator Chain: C: PDB Molecule:dna (cytosine-5)-methyltransferase 3-like; PDBTitle: structure of dnmt3a-dnmt3l c-terminal domain complex
39 | d1wjpa2 |
| not modelled | 5.9 | 46 | Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2
40 | d1v7wa2 |
| not modelled | 5.8 | 13 | Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:Glycosyltransferase family 36 N-terminal domain
41 | d1n0sa_ |
| not modelled | 5.8 | 20 | Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like
42 | d1mjda_ |
| not modelled | 5.8 | 33 | Fold:beta-Grasp (ubiquitin-like) Superfamily:Doublecortin (DC) Family:Doublecortin (DC)
43 | d2axla1 |
| not modelled | 5.5 | 15 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:RecQ helicase DNA-binding domain-like
44 | d1e6ya1 |
| not modelled | 5.2 | 46 | Fold:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain Superfamily:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain Family:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain
45 | c3c5iD_ |
| not modelled | 5.2 | 16 | PDB header:transferase Chain: D: PDB Molecule:choline kinase; PDBTitle: crystal structure of plasmodium knowlesi choline kinase, pkh_134520
46 | c1ydiB_ |
| not modelled | 5.1 | 37 | PDB header:cell adhesion, structural protein Chain: B: PDB Molecule:alpha-actinin 4; PDBTitle: human vinculin head domain (vh1, 1-258) in complex with2 human alpha-actinin's vinculin-binding site (residues 731-3 760)
47 | c1zx3A_ |
| not modelled | 5.1 | 30 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ne0241; PDBTitle: structure of ne0241 protein of unknown function from nitrosomonas2 europaea