BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (136 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0AFW6 Regulator of nucleoside diphosphate kinase n=155... 277 7e-74 UniRef50_C5S652 GreA/GreB family elongation factor n=2 Tax=Prote... 129 2e-29 UniRef50_A6VVR5 GreA/GreB family elongation factor n=15 Tax=Prot... 121 5e-27 UniRef50_B8GS58 GreA/GreB family elongation factor n=22 Tax=Prot... 114 9e-25 UniRef50_Q3SMM4 GreA/GreB family elongation factor n=1 Tax=Thiob... 114 1e-24 UniRef50_Q6MQZ8 Regulator of nucleoside diphosphate kinase n=1 T... 112 4e-24 UniRef50_B9MBQ3 GreA/GreB family elongation factor n=6 Tax=Betap... 112 4e-24 UniRef50_Q3BX42 Regulator of nucleoside diphosphate kinase n=9 T... 111 6e-24 UniRef50_Q7MD62 Transcription elongation factor n=10 Tax=Proteob... 111 9e-24 UniRef50_Q2LTP9 Transcription elongation factor n=2 Tax=Deltapro... 110 1e-23 UniRef50_A4XNX9 GreA/GreB family elongation factor n=16 Tax=Bact... 109 2e-23 UniRef50_A5F052 Regulator of nucleoside diphosphate kinase n=31 ... 108 4e-23 UniRef50_Q3K4S3 Regulator of nucleoside diphosphate kinase n=2 T... 104 7e-22 UniRef50_Q1H3Z9 GreA/GreB family elongation factor n=1 Tax=Methy... 103 1e-21 UniRef50_C9P6Y2 Regulator of nucleoside diphosphate kinase n=1 T... 102 4e-21 UniRef50_B5EI69 GreA/GreB family elongation factor n=6 Tax=Desul... 99 3e-20 UniRef50_B5JTX6 Transcription elongation factor n=1 Tax=gamma pr... 98 6e-20 UniRef50_B9NGJ6 Predicted protein n=12 Tax=cellular organisms Re... 97 2e-19 UniRef50_C3X2V3 GreA/GreB family elongation factor n=2 Tax=Oxalo... 97 2e-19 UniRef50_A1U1V6 GreA/GreB family elongation factor n=2 Tax=Marin... 96 3e-19 UniRef50_A0LL17 GreA/GreB family elongation factor n=3 Tax=Bacte... 93 2e-18 UniRef50_C6RP41 GreA/GreB family elongation factor n=4 Tax=Acine... 92 4e-18 UniRef50_B0SEQ9 Transcription elongation factor n=2 Tax=Leptospi... 91 1e-17 UniRef50_B8G0E1 GreA/GreB family elongation factor n=2 Tax=Desul... 91 1e-17 UniRef50_B3PF63 Regulator of nucleoside diphosphate kinase n=1 T... 89 4e-17 UniRef50_Q11P04 Transcription elongation factor n=1 Tax=Cytophag... 89 5e-17 UniRef50_A6GQE5 Nucleoside diphosphate kinase regulator n=1 Tax=... 87 2e-16 UniRef50_A4BB58 Nucleoside diphosphate kinase regulator n=1 Tax=... 86 3e-16 UniRef50_A6C278 Nucleoside diphosphate kinase regulator protein,... 86 4e-16 UniRef50_B2SQJ5 Regulator of nucleoside diphosphate kinase n=8 T... 84 1e-15 UniRef50_A9MBQ4 GreA/GreB family elongation factor n=36 Tax=Bruc... 84 1e-15 UniRef50_A9GAI2 Regulator of nucleoside diphosphate kinase n=1 T... 82 4e-15 UniRef50_A1TUC9 GreA/GreB family elongation factor n=4 Tax=Burkh... 81 8e-15 UniRef50_A6X582 GreA/GreB family elongation factor n=3 Tax=Rhizo... 80 2e-14 UniRef50_D1SYS0 GreA/GreB family elongation factor n=1 Tax=Acido... 80 2e-14 UniRef50_C6X5Q8 Transcription elongation factor n=1 Tax=Flavobac... 80 2e-14 UniRef50_A7HAZ2 GreA/GreB family elongation factor n=5 Tax=Myxoc... 79 4e-14 UniRef50_A9EFF1 GreA/GreB family elongation factor n=1 Tax=Ocean... 78 9e-14 UniRef50_Q5QX12 Transcription elongation factor family protein n... 78 1e-13 UniRef50_B7L307 GreA/GreB family elongation factor n=1 Tax=Methy... 77 1e-13 UniRef50_A7HFE1 GreA/GreB family elongation factor n=1 Tax=Anaer... 77 1e-13 UniRef50_Q5P744 Transcription elongation factor n=3 Tax=Proteoba... 77 2e-13 UniRef50_Q4KB20 Acetyltransferase, GNAT family family n=9 Tax=Ba... 76 3e-13 UniRef50_Q13WN5 GreA/GreB family elongation factor n=50 Tax=Burk... 75 5e-13 UniRef50_B8IFL5 GreA/GreB family elongation factor n=8 Tax=Methy... 75 5e-13 UniRef50_Q2GA51 GreA/GreB family elongation factor n=1 Tax=Novos... 75 9e-13 UniRef50_C6XWY5 Transcription elongation factor GreA/GreB domain... 74 1e-12 UniRef50_Q0BZP7 Regulatory protein n=1 Tax=Hyphomonas neptunium ... 74 1e-12 UniRef50_C0N448 Putative uncharacterized protein n=1 Tax=Methylo... 74 2e-12 UniRef50_A8LN19 GreA/GreB family elongation factor n=8 Tax=Alpha... 73 2e-12 UniRef50_A6EIL5 Nucleoside diphosphate kinase regulator protein,... 73 3e-12 UniRef50_Q74EX3 Nucleoside diphosphate kinase regulator protein,... 72 8e-12 UniRef50_C0A6F4 GreA/GreB family elongation factor n=1 Tax=Opitu... 69 6e-11 UniRef50_A7IJH2 GreA/GreB family elongation factor n=4 Tax=Rhizo... 68 1e-10 UniRef50_Q15Z69 GreA/GreB family elongation factor n=1 Tax=Pseud... 67 1e-10 UniRef50_B0T793 GreA/GreB family elongation factor n=1 Tax=Caulo... 67 1e-10 UniRef50_C6WYK0 GreA/GreB family elongation factor n=2 Tax=Methy... 67 2e-10 UniRef50_C7CFG6 Putative regulator n=1 Tax=Methylobacterium exto... 66 4e-10 UniRef50_A5VGM9 GreA/GreB family elongation factor n=1 Tax=Sphin... 65 6e-10 UniRef50_A7HXN2 GreA/GreB family elongation factor n=1 Tax=Parvi... 65 7e-10 UniRef50_A3PS97 GreA/GreB family elongation factor n=4 Tax=Rhodo... 64 1e-09 UniRef50_A5V983 GreA/GreB family elongation factor n=1 Tax=Sphin... 64 2e-09 UniRef50_B0T7C4 GreA/GreB family elongation factor n=1 Tax=Caulo... 63 3e-09 UniRef50_Q930S2 Putative uncharacterized protein n=1 Tax=Sinorhi... 61 1e-08 UniRef50_C0QME5 GreA2 n=1 Tax=Desulfobacterium autotrophicum HRM... 61 1e-08 UniRef50_C6VSR5 GreA/GreB family elongation factor n=2 Tax=Sphin... 60 1e-08 UniRef50_B8IHN9 GreA/GreB family elongation factor n=1 Tax=Methy... 60 2e-08 UniRef50_Q98F06 Nucleoside diphosphate kinase regulator n=2 Tax=... 60 2e-08 UniRef50_B1ZD84 GreA/GreB family elongation factor n=4 Tax=Methy... 60 2e-08 UniRef50_Q3SU57 GreA/GreB family elongation factor n=9 Tax=Brady... 60 3e-08 UniRef50_A5FHU8 GreA/GreB family elongation factor n=1 Tax=Flavo... 59 3e-08 UniRef50_B4RF21 Transcription elongation factor n=2 Tax=cellular... 59 5e-08 UniRef50_B1ZU20 GreA/GreB family elongation factor n=1 Tax=Opitu... 58 8e-08 UniRef50_A6EMP4 Transcription elongation factor n=4 Tax=Bacteroi... 57 2e-07 UniRef50_A0LZA7 Transcription elongation factor n=1 Tax=Gramella... 55 5e-07 UniRef50_A4CMB9 Nucleoside diphosphate kinase regulator n=1 Tax=... 54 1e-06 UniRef50_B4RBL2 Transcription elongation factor n=1 Tax=Phenylob... 54 2e-06 UniRef50_Q13CU9 Putative uncharacterized protein n=1 Tax=Rhodops... 53 3e-06 UniRef50_A7HXN3 GreA/GreB family elongation factor n=1 Tax=Parvi... 52 5e-06 UniRef50_C6XVH8 Transcription elongation factor n=1 Tax=Pedobact... 52 6e-06 UniRef50_A5FHJ3 GreA/GreB family elongation factor n=3 Tax=Flavo... 51 9e-06 UniRef50_Q98F07 Nucleoside diphosphate kinase regulator; Rnk n=2... 50 2e-05 UniRef50_B4W8F1 Putative uncharacterized protein n=1 Tax=Brevund... 50 2e-05 UniRef50_B9KZF4 Transcription elongation factor greA n=2 Tax=The... 50 3e-05 UniRef50_A6LPL4 Transcription elongation factor greA n=30 Tax=Cl... 49 7e-05 UniRef50_A5FRA2 Transcription elongation factor n=3 Tax=Dehaloco... 48 7e-05 UniRef50_UPI00016C498C transcription elongation factor greA n=1 ... 48 9e-05 UniRef50_Q3ATA7 Transcription elongation factor greA n=13 Tax=Ba... 47 1e-04 UniRef50_Q0B0N4 Transcription elongation factor greA n=6 Tax=Clo... 47 2e-04 UniRef50_C6WVB7 GreA/GreB family elongation factor n=2 Tax=Methy... 47 3e-04 UniRef50_C0QWD9 Transcription elongation factor n=2 Tax=Brachysp... 46 3e-04 UniRef50_D0J9T5 Transcription elongation factor n=55 Tax=Bacteri... 46 4e-04 UniRef50_A5D4X0 Putative uncharacterized protein n=1 Tax=Pelotom... 46 4e-04 UniRef50_Q97EB6 Transcription elongation factor greA n=6 Tax=Clo... 46 4e-04 UniRef50_Q4HT85 Transcription elongation factor n=1 Tax=Campylob... 45 7e-04 UniRef50_P64276 Transcription elongation factor greA n=48 Tax=de... 45 8e-04 UniRef50_C1ZBG3 Transcription elongation factor n=1 Tax=Planctom... 45 8e-04 UniRef50_C0QKN0 Transcription elongation factor n=1 Tax=Desulfob... 45 8e-04 UniRef50_Q3Z8E7 Transcription elongation factor greA n=2 Tax=Deh... 44 0.001 UniRef50_D2R891 Transcription elongation factor GreA n=1 Tax=Pir... 44 0.001 UniRef50_Q04EK0 Transcription elongation factor greA n=4 Tax=Bac... 44 0.002 UniRef50_Q11G80 GreA/GreB family elongation factor n=1 Tax=Chela... 44 0.002 UniRef50_C4L6P4 GreA/GreB family elongation factor n=1 Tax=Exigu... 44 0.002 UniRef50_Q30T56 Transcription elongation factor n=3 Tax=Campylob... 44 0.002 UniRef50_A0M1N1 GreA-like transcription elongation factor n=3 Ta... 44 0.002 UniRef50_B9XEY1 GreA/GreB family elongation factor n=1 Tax=bacte... 43 0.003 UniRef50_Q2LR03 Transcription elongation factor greA n=1 Tax=Syn... 43 0.003 UniRef50_Q1H282 GreA/GreB family elongation factor n=2 Tax=Prote... 43 0.003 UniRef50_C4XLU8 Transcription elongation factor greA n=11 Tax=De... 43 0.004 UniRef50_Q1AU03 Transcription elongation factor n=1 Tax=Rubrobac... 42 0.004 UniRef50_C9RKD0 Transcription elongation factor n=1 Tax=Fibrobac... 42 0.004 UniRef50_B1MX52 Transcription elongation factor greA n=11 Tax=Fi... 42 0.005 UniRef50_C8S319 GreA/GreB family elongation factor n=1 Tax=Rhodo... 42 0.005 UniRef50_B0P8A6 Transcription elongation factor n=1 Tax=Anaerotr... 42 0.006 UniRef50_B4RBL3 Transcription elongation factor GreA/GreB family... 42 0.006 UniRef50_Q8ZJH2 Transcription elongation factor greB n=165 Tax=P... 42 0.006 UniRef50_D1CSU3 Transcription elongation factor (Fragment) n=1 T... 42 0.007 UniRef50_D0WJ76 Transcription elongation factor n=1 Tax=Slackia ... 42 0.008 UniRef50_D1PEW3 Transcription elongation factor n=1 Tax=Prevotel... 42 0.008 UniRef50_Q725M4 Transcription elongation factor greA n=4 Tax=Des... 41 0.009 UniRef50_A6X2G5 GreA/GreB family elongation factor n=2 Tax=Ochro... 41 0.010 UniRef50_Q01RT9 GreA/GreB family elongation factor n=2 Tax=Acido... 41 0.010 UniRef50_A7HDS3 Transcription elongation factor GreB n=3 Tax=Myx... 41 0.012 UniRef50_C1CW74 Putative transcription elongation factor n=1 Tax... 41 0.013 UniRef50_D0LKY5 Transcription elongation factor n=1 Tax=Haliangi... 40 0.015 UniRef50_Q03RN4 Transcription elongation factor n=1 Tax=Lactobac... 40 0.020 UniRef50_D1CDC6 Transcription elongation factor n=1 Tax=Thermoba... 40 0.021 UniRef50_UPI0001C37CEA transcription elongation factor GreA n=1 ... 40 0.022 UniRef50_B2V1C0 Transcription elongation factor n=28 Tax=Clostri... 40 0.022 UniRef50_A0LK20 Transcription elongation factor greA n=1 Tax=Syn... 40 0.024 UniRef50_UPI0001C3129D transcription elongation factor GreA n=1 ... 40 0.026 UniRef50_Q817Z6 Transcription elongation factor greA n=141 Tax=c... 39 0.034 UniRef50_Q2Z001 Transcription elongation factor n=1 Tax=uncultur... 39 0.047 UniRef50_A0AIU5 Transcription elongation factor greA n=99 Tax=Ba... 39 0.047 UniRef50_A5V3E1 Transcription elongation factor greA n=13 Tax=Pr... 39 0.053 UniRef50_Q0BR49 Transcription elongation factor greB n=4 Tax=cel... 39 0.056 UniRef50_Q67JL1 Transcription elongation factor n=2 Tax=Clostrid... 39 0.062 UniRef50_A9WK05 Transcription elongation factor greA n=6 Tax=Chl... 39 0.062 UniRef50_C1F9R4 Transcription elongation factor GreA n=1 Tax=Aci... 39 0.063 UniRef50_B2S1W7 Transcription elongation factor greA n=6 Tax=Tre... 39 0.068 >UniRef50_P0AFW6 Regulator of nucleoside diphosphate kinase n=155 Tax=Enterobacteriaceae RepID=RNK_ECO57 Length = 136 Score = 277 bits (709), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 136/136 (100%), Positives = 136/136 (100%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV Sbjct: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 Query: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE 120 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE Sbjct: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE 120 Query: 121 VLELEYQPEAAGDYLL 136 VLELEYQPEAAGDYLL Sbjct: 121 VLELEYQPEAAGDYLL 136 >UniRef50_C5S652 GreA/GreB family elongation factor n=2 Tax=Proteobacteria RepID=C5S652_CHRVI Length = 171 Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 65/134 (48%), Positives = 86/134 (64%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 S+P II++ LDAER++ L+E P D L AEL RA++ P EMP +VV+MNS V+ Sbjct: 37 SQPKIILSSLDAERLENLIESLPRNAFPGMDELEAELARAEVVDPREMPPNVVSMNSTVR 96 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEV 121 FR +S E TLVYP M S ++S++APVG+ALLGL GD I W PGG + + Sbjct: 97 FRVMSTNEAFTLTLVYPKDMDASGGKISILAPVGSALLGLSSGDEIEWPKPGGGVLRVRI 156 Query: 122 LELEYQPEAAGDYL 135 E+ YQPE AG+Y Sbjct: 157 EEVTYQPERAGEYF 170 >UniRef50_A6VVR5 GreA/GreB family elongation factor n=15 Tax=Proteobacteria RepID=A6VVR5_MARMS Length = 137 Score = 121 bits (304), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 58/136 (42%), Positives = 88/136 (64%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 M RP I I+ LDA R++ +L+ +Y+ P D L E++RA++ P +MP ++VTMNS V Sbjct: 2 MQRPQITISSLDAVRLEKILDSLSYSQFPNKDDLQEEINRAEIVEPRDMPDNIVTMNSTV 61 Query: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE 120 F+ LS + +TLVYP + +SV+APVG+ALLGL+ GD I W P G + Sbjct: 62 TFKVLSSEKEFSKTLVYPKDANGAEDTVSVLAPVGSALLGLKEGDQIDWPKPNGDVLSVV 121 Query: 121 VLELEYQPEAAGDYLL 136 +++++YQPE AG++ L Sbjct: 122 IMKVDYQPERAGEFQL 137 >UniRef50_B8GS58 GreA/GreB family elongation factor n=22 Tax=Proteobacteria RepID=B8GS58_THISH Length = 137 Score = 114 bits (285), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 59/131 (45%), Positives = 86/131 (65%) Query: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKF 62 +P+I ++ LD +R++ LL+ L L AEL+RA + P ++P +VTMNSRV+F Sbjct: 4 QPSITLSSLDLDRLEHLLDSLPREALANHRQLLAELERANVVEPSQVPPTLVTMNSRVRF 63 Query: 63 RNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVL 122 R +G RTLVYP+ M ++SV+AP+G+ALLGL VGDSI W P G ++ ++ Sbjct: 64 RVEPEGREFQRTLVYPSGMDGDEEKISVLAPIGSALLGLSVGDSIAWPTPKGGEMNVRIM 123 Query: 123 ELEYQPEAAGD 133 E+ YQPEAAG+ Sbjct: 124 EILYQPEAAGE 134 >UniRef50_Q3SMM4 GreA/GreB family elongation factor n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SMM4_THIDA Length = 138 Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 64/138 (46%), Positives = 83/138 (60%), Gaps = 9/138 (6%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPI----ADALNAELDRAQMCSPEEMPHDVVTMN 57 +RP I +++ D ER++ +L AGLP A+AL ELDRA++ PE MP DVVTMN Sbjct: 5 TRPAITVSERDLERLEDML-----AGLPDDLPGAEALRDELDRAEILRPEAMPADVVTMN 59 Query: 58 SRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVAT 117 SR++F G+ TLVYP T S QL V P G A+LGL VG I W+ P G Sbjct: 60 SRIRFVVEPAGKEMEMTLVYPRDFTGSPDQLPVTTPAGIAVLGLAVGQEIEWQAPNGQKV 119 Query: 118 HLEVLELEYQPEAAGDYL 135 +++L YQPE AGDY+ Sbjct: 120 GARIVDLAYQPERAGDYM 137 >UniRef50_Q6MQZ8 Regulator of nucleoside diphosphate kinase n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MQZ8_BDEBA Length = 138 Score = 112 bits (280), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 58/133 (43%), Positives = 83/133 (62%), Gaps = 3/133 (2%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 + P I++ D D R+ L+ Q P A+AL EL RA + + +E+P +VVTMNSRV+ Sbjct: 7 TEPRILVTDQDFHRLSALVSQVEG---PFAEALEEELSRANVIAQKEIPKNVVTMNSRVQ 63 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEV 121 F + G+ TLVYP +LS++APVG ALLGL VG I+W+LP G + L+V Sbjct: 64 FLDEVSGQESEMTLVYPQDAKLEEGRLSILAPVGIALLGLSVGQEINWKLPNGQSKKLKV 123 Query: 122 LELEYQPEAAGDY 134 + YQPEA+G++ Sbjct: 124 QAVTYQPEASGNF 136 >UniRef50_B9MBQ3 GreA/GreB family elongation factor n=6 Tax=Betaproteobacteria RepID=B9MBQ3_DIAST Length = 135 Score = 112 bits (280), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 64/131 (48%), Positives = 84/131 (64%), Gaps = 2/131 (1%) Query: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKF 62 +P II++ LD ERI+ LLE+ A P +AL AELDRA + P++MP +VVTMNS V+F Sbjct: 4 KPHIILSSLDLERIEALLEK-QTAPFPGREALEAELDRADVFDPKDMPPNVVTMNSTVRF 62 Query: 63 RNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVL 122 L G+ TLVYP +M S ++SV APVG ALLGL VGD P G T + V Sbjct: 63 TLLETGKTNTLTLVYPKEMDGSGDKVSVFAPVGIALLGLGVGDEFQMPSPTGQVT-VRVD 121 Query: 123 ELEYQPEAAGD 133 +++QPE AG+ Sbjct: 122 AIDFQPENAGE 132 >UniRef50_Q3BX42 Regulator of nucleoside diphosphate kinase n=9 Tax=Gammaproteobacteria RepID=Q3BX42_XANC5 Length = 146 Score = 111 bits (278), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 58/131 (44%), Positives = 84/131 (64%) Query: 4 PTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFR 63 P+I+++ D R++ LL+ PA+ P A AL+ EL RA++ P+++P DVVTM+SR++ Sbjct: 11 PSILVSSHDLARLEALLDSPAFNKHPAATALSDELGRARVLPPDQIPGDVVTMHSRIECE 70 Query: 64 NLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLE 123 + GE TLVYP + + ++SV+APVG+ALLGL VG SI W P G L V Sbjct: 71 DQLHGERHTLTLVYPHEADVQHGRISVLAPVGSALLGLSVGQSIDWRTPDGRDLRLRVTA 130 Query: 124 LEYQPEAAGDY 134 + QP AAGD+ Sbjct: 131 VHDQPAAAGDF 141 >UniRef50_Q7MD62 Transcription elongation factor n=10 Tax=Proteobacteria RepID=Q7MD62_VIBVY Length = 135 Score = 111 bits (277), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 57/132 (43%), Positives = 87/132 (65%), Gaps = 2/132 (1%) Query: 5 TIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRN 64 +I ++ LD +RI LLE+ A P + L ELDRA + +P++MP ++VTMNS V+F Sbjct: 6 SICVSTLDMDRISALLEKMANLS-PELEKLENELDRANVLAPQQMPDNIVTMNSTVRFTF 64 Query: 65 LSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 + +V +TLVYP ++ + + +S+ APVG+ALLGL VG + W +PGG +E+LE+ Sbjct: 65 VGSDKVMEKTLVYPDQVRNPD-DVSIFAPVGSALLGLSVGQQLTWPMPGGAERTIEILEV 123 Query: 125 EYQPEAAGDYLL 136 YQPE G++ L Sbjct: 124 TYQPERMGEFHL 135 >UniRef50_Q2LTP9 Transcription elongation factor n=2 Tax=Deltaproteobacteria RepID=Q2LTP9_SYNAS Length = 134 Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 61/136 (44%), Positives = 86/136 (63%), Gaps = 2/136 (1%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 M++ I + + D ER++ LLE + A +L AEL A + EEMP DVVTMNS V Sbjct: 1 MNKRRIYVTEQDMERLEDLLETSKKS--EYARSLEAELVNAVVVPSEEMPPDVVTMNSCV 58 Query: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE 120 F +L+ G TLVYP + ++ ++SV+APVG+AL+GL VG +I W +P G L Sbjct: 59 CFEDLTTGNRETITLVYPGQANMASGRVSVLAPVGSALIGLSVGQTIEWPMPNGRKRRLR 118 Query: 121 VLELEYQPEAAGDYLL 136 ++E+ YQPEAAGD+ L Sbjct: 119 IVEVLYQPEAAGDFHL 134 >UniRef50_A4XNX9 GreA/GreB family elongation factor n=16 Tax=Bacteria RepID=A4XNX9_PSEMY Length = 135 Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 65/131 (49%), Positives = 82/131 (62%), Gaps = 2/131 (1%) Query: 4 PTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFR 63 P I I LD +R++ LL+ G P A AL AELDRA++ +E+P +VTMNSRV R Sbjct: 5 PAITITRLDLQRLERLLDSLDEFG-PGAAALQAELDRAEVVGLDEVPAGLVTMNSRVHCR 63 Query: 64 NLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLE 123 S G+ TLVYP T +S++APVG+ALLGL VG I W PGG L +L Sbjct: 64 EESSGKDYHLTLVYPQDAGGEGT-VSILAPVGSALLGLSVGQHIDWPAPGGKQLKLTLLA 122 Query: 124 LEYQPEAAGDY 134 +EYQPEAAG+Y Sbjct: 123 VEYQPEAAGEY 133 >UniRef50_A5F052 Regulator of nucleoside diphosphate kinase n=31 Tax=Vibrio RepID=A5F052_VIBC3 Length = 135 Score = 108 bits (271), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 60/130 (46%), Positives = 84/130 (64%), Gaps = 2/130 (1%) Query: 5 TIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRN 64 TI+++ D +RI L++ A P + L ELDRA + P EMP DVVTMNS V+F+ Sbjct: 6 TIVVSTRDMDRISQLMDNLATLS-PELEKLEEELDRATVLEPAEMPEDVVTMNSTVRFKF 64 Query: 65 LSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 L EV +TLVYP + S+ +S+ APVG+ALLGL VG + W +PGG LE++++ Sbjct: 65 LGSDEVMEKTLVYPNDV-KSSADVSIFAPVGSALLGLAVGQQLAWPMPGGTLKTLEIIDI 123 Query: 125 EYQPEAAGDY 134 YQPE AG++ Sbjct: 124 VYQPERAGEF 133 >UniRef50_Q3K4S3 Regulator of nucleoside diphosphate kinase n=2 Tax=Pseudomonas fluorescens RepID=Q3K4S3_PSEPF Length = 136 Score = 104 bits (260), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 60/135 (44%), Positives = 81/135 (60%), Gaps = 2/135 (1%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQ-MCSPEEMPHDVVTMNSR 59 M+ P+I + LD +R++ L++ LP AL ELDRA + +E+P DVVTMNSR Sbjct: 1 MTAPSITLTRLDVQRLERLIDS-LDDTLPGVIALQTELDRADTLVGHDEVPADVVTMNSR 59 Query: 60 VKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHL 119 V R S G+ TLVYP ++S++APVG+ALLGL+VG I W PGG L Sbjct: 60 VHCREESSGKDYHLTLVYPKHANADEGKVSILAPVGSALLGLKVGQHIDWPAPGGKTLKL 119 Query: 120 EVLELEYQPEAAGDY 134 +LE+E QP GD+ Sbjct: 120 TLLEVESQPSNGGDF 134 >UniRef50_Q1H3Z9 GreA/GreB family elongation factor n=1 Tax=Methylobacillus flagellatus KT RepID=Q1H3Z9_METFK Length = 138 Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 58/139 (41%), Positives = 85/139 (61%), Gaps = 4/139 (2%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIAD---ALNAELDRAQMCSPEEMPHDVVTMN 57 M + I + D +R+ ++EQ G P D L EL R++ E++ DVVTMN Sbjct: 1 MLQGAIQVTSFDMDRLFSMIEQLRKNGFPETDNLARLEDELARSEEVPSEQVGADVVTMN 60 Query: 58 SRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVAT 117 SRV R+ ++G TLV+P+ S ++SV+AP+G A+LG RVGD I W +PGGV Sbjct: 61 SRVLLRDEANGHEMSCTLVFPSDADASANRISVVAPLGTAILGYRVGDVIDWAMPGGVRQ 120 Query: 118 HLEVLELEYQPEAAGDYLL 136 + +L+++YQPEAAGD+ L Sbjct: 121 Y-RILKIDYQPEAAGDFHL 138 >UniRef50_C9P6Y2 Regulator of nucleoside diphosphate kinase n=1 Tax=Vibrio metschnikovii CIP 69.14 RepID=C9P6Y2_VIBME Length = 136 Score = 102 bits (253), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 55/129 (42%), Positives = 81/129 (62%), Gaps = 2/129 (1%) Query: 6 IIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNL 65 II++ LD +RI L+++ + + L ELDRA + +PEE+P DVVTMNS VKF+ Sbjct: 8 IIVSTLDMDRISALMDKLPKLSKEL-ERLENELDRATVLNPEEIPADVVTMNSTVKFKFQ 66 Query: 66 SDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 +V +TLVYP + N +S+ APVG+ALLGL G + W +P GV +E++++ Sbjct: 67 GSDDVMQKTLVYPHDVK-GNDDISIFAPVGSALLGLSKGQQLTWPMPNGVERTIEIIDII 125 Query: 126 YQPEAAGDY 134 QPE G+Y Sbjct: 126 DQPERNGEY 134 >UniRef50_B5EI69 GreA/GreB family elongation factor n=6 Tax=Desulfuromonadales RepID=B5EI69_GEOBB Length = 143 Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 52/134 (38%), Positives = 85/134 (63%), Gaps = 4/134 (2%) Query: 6 IIINDLDAERIDILLEQPAYAGLPIADALNA---ELDRAQMCSPEEMPHDVVTMNSRVKF 62 +++ + D ER++ L+++ + L EL RA++ P +P DV+TMNS+V Sbjct: 11 VVVTEFDMERLEALIDKARSTQTRDSKNLKELGEELVRAEVVDPAGIPPDVITMNSKVCL 70 Query: 63 RNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVL 122 ++L E V TLV+P + ++ ++S++APVG A++G R GD I W +PGG+ +L+V Sbjct: 71 QDLDSEEELVYTLVFPNEADLASGKISILAPVGTAMIGFRTGDRITWPVPGGMK-NLKVK 129 Query: 123 ELEYQPEAAGDYLL 136 ++ YQPEAAGDY L Sbjct: 130 KILYQPEAAGDYHL 143 >UniRef50_B5JTX6 Transcription elongation factor n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JTX6_9GAMM Length = 138 Score = 98.2 bits (243), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 53/135 (39%), Positives = 80/135 (59%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 + P I + +LD RI+ LLE+ L EL R ++ S +E+ DVVTMNSRVK Sbjct: 4 THPPITLPELDVARIESLLEKLDLKAKNNHTELFEELYRCRIVSSQEVSPDVVTMNSRVK 63 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEV 121 + L + TL YP +++ ++ +S++AP+G+A++GL VG I W LP G L + Sbjct: 64 YTRLDTQQQSTLTLCYPDQISRADDAVSILAPIGSAIIGLSVGQIIDWPLPNGKNAPLRI 123 Query: 122 LELEYQPEAAGDYLL 136 EL +QPE +G+Y L Sbjct: 124 DELLFQPERSGNYTL 138 >UniRef50_B9NGJ6 Predicted protein n=12 Tax=cellular organisms RepID=B9NGJ6_POPTR Length = 145 Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 55/136 (40%), Positives = 85/136 (62%), Gaps = 3/136 (2%) Query: 2 SRP-TIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 SRP T+ + +LD R++ + + A L + L+A L+RA + SP+ +P DVVTMNSRV Sbjct: 12 SRPATLYLTELDVTRLEGIASRAGTAELD--EMLDALLERAAIVSPDAIPKDVVTMNSRV 69 Query: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE 120 + + R TLVYP + +LSV++P+G ALLG R GD++ + LP G A + Sbjct: 70 VCALEGEAKPRDWTLVYPDDADLATGRLSVLSPIGQALLGARSGDTVDYRLPDGRAQRVT 129 Query: 121 VLELEYQPEAAGDYLL 136 ++E+ +QPEA+G + L Sbjct: 130 IVEIAFQPEASGQFTL 145 >UniRef50_C3X2V3 GreA/GreB family elongation factor n=2 Tax=Oxalobacter formigenes RepID=C3X2V3_OXAFO Length = 140 Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 52/123 (42%), Positives = 74/123 (60%), Gaps = 1/123 (0%) Query: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKF 62 RP I + D ER++ +L Y +P L ELDRA + PEE+P DV+T+NS +F Sbjct: 14 RPPITVTTHDYERLEQMLRNAKYRNIPGMADLQRELDRANVVEPEELPEDVITINSTARF 73 Query: 63 RNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVL 122 + + TLVYP K D +++SV+APVG+ALLGL G SI W++PG L VL Sbjct: 74 IDDCTNDQYEITLVYPDK-ADGVSKISVLAPVGSALLGLSAGQSIPWQVPGRQKLQLRVL 132 Query: 123 ELE 125 +++ Sbjct: 133 DVK 135 >UniRef50_A1U1V6 GreA/GreB family elongation factor n=2 Tax=Marinobacter RepID=A1U1V6_MARAV Length = 128 Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 53/125 (42%), Positives = 75/125 (60%), Gaps = 1/125 (0%) Query: 4 PTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFR 63 P I +++ D R+ LLE+ A +AD L EL RA M +MP VVTMNSRV+F Sbjct: 5 PHITVSEEDYNRLSTLLERVAGQS-DVADGLEDELSRADMKPLADMPEGVVTMNSRVRFL 63 Query: 64 NLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLE 123 N GE LVYP ++ D++ ++S++AP GAA+LGL +G SI W + G HL+V+ Sbjct: 64 NEDTGEEHEVALVYPHEVGDADHKVSILAPAGAAMLGLSIGSSIEWPMKGRKPIHLKVIG 123 Query: 124 LEYQP 128 + P Sbjct: 124 VTRNP 128 >UniRef50_A0LL17 GreA/GreB family elongation factor n=3 Tax=Bacteria RepID=A0LL17_SYNFM Length = 141 Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 51/140 (36%), Positives = 79/140 (56%), Gaps = 6/140 (4%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADA-----LNAELDRAQMCSPEEMPHDVVTM 56 R I ++D D +R++ L+E + D L EL +A++ + +P D VTM Sbjct: 3 KRRKIYVSDYDMKRLEKLIELLSEDEWDDRDTKHLQVLEEELRKAEVVAARNIPRDTVTM 62 Query: 57 NSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVA 116 NS+V+ ++L G + LV+P + ++SV+AP+G AL+G VGD I W +P G Sbjct: 63 NSKVRVKDLDTGIETIYHLVFPGEADVKQNRISVLAPIGTALIGYAVGDVIQWNVPAG-T 121 Query: 117 THLEVLELEYQPEAAGDYLL 136 L + E+ YQPEAAGD+ L Sbjct: 122 KKLRIEEILYQPEAAGDFHL 141 >UniRef50_C6RP41 GreA/GreB family elongation factor n=4 Tax=Acinetobacter RepID=C6RP41_ACIRA Length = 134 Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 51/134 (38%), Positives = 76/134 (56%), Gaps = 1/134 (0%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 M++P III+ D R++ +LE ++ I + L EL RA++ P E+P +VV+MN+RV Sbjct: 1 MAKPNIIISSQDLHRLETMLEHQSHMTQTI-EHLEDELARAEVVEPHEIPANVVSMNTRV 59 Query: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE 120 E LVYP Q++V+AP+GAA+LGL G I W P G ++ Sbjct: 60 LITIAPSTEPTEIQLVYPHDFRGDKGQVNVLAPIGAAILGLAEGQEIEWPQPDGHLMKVK 119 Query: 121 VLELEYQPEAAGDY 134 + ++ YQPE GDY Sbjct: 120 IEKVLYQPEREGDY 133 >UniRef50_B0SEQ9 Transcription elongation factor n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SEQ9_LEPBA Length = 138 Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 49/139 (35%), Positives = 79/139 (56%), Gaps = 7/139 (5%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADA----LNAELDRAQMCSPEEMPHDVVTMN 57 ++ I I +LD R+ ++ + Y+ DA L E++RAQ +++P +VVTMN Sbjct: 3 TKKKISITNLDYIRLKKMILE--YSKRNKTDANVQDLLGEIERAQKVDSKQIPSNVVTMN 60 Query: 58 SRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVAT 117 S ++ +NL E + LVYP Q+S++AP+ A +G + GD I W +P GV Sbjct: 61 SVIEIKNLEGIEFKEFRLVYPEDSNLDQNQISILAPIATASIGYKTGDVIFWNVPDGVY- 119 Query: 118 HLEVLELEYQPEAAGDYLL 136 ++ E++YQPEA GD+ L Sbjct: 120 RFQITEIKYQPEANGDFHL 138 >UniRef50_B8G0E1 GreA/GreB family elongation factor n=2 Tax=Desulfitobacterium hafniense RepID=B8G0E1_DESHD Length = 138 Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 47/103 (45%), Positives = 66/103 (64%), Gaps = 1/103 (0%) Query: 34 LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93 L EL+ A + E++P + +TMNSR+ ++L GE V TLVYP ++S++AP Sbjct: 37 LEHELNGADVVPSEKIPGNAITMNSRILLKDLETGEETVYTLVYPEDADLLEDKISILAP 96 Query: 94 VGAALLGLRVGDSIHWELPGGVATHLEVLELEYQPEAAGDYLL 136 VG A+LG GD I W++PGGV +V ++ YQPEAAGDY L Sbjct: 97 VGTAILGYLEGDIIDWKVPGGV-VRFKVEKILYQPEAAGDYHL 138 >UniRef50_B3PF63 Regulator of nucleoside diphosphate kinase n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PF63_CELJU Length = 180 Score = 89.0 bits (219), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 44/124 (35%), Positives = 78/124 (62%), Gaps = 3/124 (2%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 + +++I++ D +R+ L+E P A+AL+ E+ RA + + ++P DVV M+S V Sbjct: 57 TETSLVISNSDYQRLVQLIEDNDS---PAAEALDIEIGRATLVADAQLPADVVAMDSEVT 113 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEV 121 F +L GE + LV+PA+ ++S+++PVG+AL+GLR+G SI W +P G L+V Sbjct: 114 FEDLDSGEQKTIQLVFPAQANVDQLKISILSPVGSALIGLRIGSSIDWPVPQGKVRRLKV 173 Query: 122 LELE 125 + ++ Sbjct: 174 IAVK 177 >UniRef50_Q11P04 Transcription elongation factor n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11P04_CYTH3 Length = 149 Score = 88.6 bits (218), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 51/134 (38%), Positives = 78/134 (58%), Gaps = 6/134 (4%) Query: 7 IINDLDAERIDILL-EQPAYAGLPI--ADALNAELDRAQMCSPEEMPHDVVTMNSRVKFR 63 IIN LD RI + E + + + A++L EL ++ PEE+P++VVTM+S V Sbjct: 18 IINKLDYSRIQQCINEAKQFKSISVVEANSLMNELKLGKLVEPEEIPNNVVTMHSIVTIV 77 Query: 64 NLSDGEVRVR-TLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVL 122 D RV LVYP K N ++S+ +P+ AL+G ++GD I W +P G+ T +++ Sbjct: 78 -FMDSNKRVEFQLVYPDKADVKNNKISIFSPIATALIGYQIGDEIEWCVPAGM-TKIKIE 135 Query: 123 ELEYQPEAAGDYLL 136 + YQPEAAG + L Sbjct: 136 SIAYQPEAAGHFNL 149 >UniRef50_A6GQE5 Nucleoside diphosphate kinase regulator n=1 Tax=Limnobacter sp. MED105 RepID=A6GQE5_9BURK Length = 122 Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 48/127 (37%), Positives = 64/127 (50%), Gaps = 7/127 (5%) Query: 8 INDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSD 67 +N+LD RI L P LNA LD A+ P+++P DVVTMNS Sbjct: 1 MNELDLARISKL-------NAPFPPELNAALDNAEFIKPQDIPADVVTMNSLFTIVETES 53 Query: 68 GEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEYQ 127 G L YP+ + +SV++PVGA+LLG + G W P G V E+ +Q Sbjct: 54 GSTNKLMLCYPSDAEPAKGYISVLSPVGASLLGRKAGTVAQWATPNGEQHFAVVKEILFQ 113 Query: 128 PEAAGDY 134 PEA+GDY Sbjct: 114 PEASGDY 120 >UniRef50_A4BB58 Nucleoside diphosphate kinase regulator n=1 Tax=Reinekea blandensis MED297 RepID=A4BB58_9GAMM Length = 142 Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 48/123 (39%), Positives = 74/123 (60%), Gaps = 3/123 (2%) Query: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKF 62 +P + I++ D +R+ L+ Y D L +ELDRA +C P E+P D V + S V+F Sbjct: 5 KPDVFISEHDWQRLQRLVAH--YPDHEAIDWLESELDRATVCLPNELPADAVQLGSVVRF 62 Query: 63 RNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVL 122 + S G+V +R LV P + + +SV++PVG ALLGLRVGD I W G +T + +L Sbjct: 63 QLSSSGQVYLRELVLPEQ-RQHDEHISVLSPVGMALLGLRVGDEIAWPSSPGQSTTVRIL 121 Query: 123 ELE 125 +++ Sbjct: 122 DVK 124 >UniRef50_A6C278 Nucleoside diphosphate kinase regulator protein, putative n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C278_9PLAN Length = 137 Score = 85.5 bits (210), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 51/136 (37%), Positives = 73/136 (53%), Gaps = 6/136 (4%) Query: 1 MSRPTIIINDLDAERIDILL---EQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMN 57 M + I I D +R+ LL A P L+AEL A + EE+P D+VTMN Sbjct: 1 MPQQKIFITKTDYQRLQNLLLSDFTQAIGNKPYLSGLHAELAVAHIVESEEIPADIVTMN 60 Query: 58 SRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWE-LPGGVA 116 S V+ R+L E+ TLVYP +LS++ P+G A+LG R+GD + L GG Sbjct: 61 STVRLRDLETDELETYTLVYPQDANIKEGKLSILTPIGTAILGYRIGDQLRSRALAGG-- 118 Query: 117 THLEVLELEYQPEAAG 132 + + V E+ +QPE +G Sbjct: 119 SKIRVEEILFQPERSG 134 >UniRef50_B2SQJ5 Regulator of nucleoside diphosphate kinase n=8 Tax=Xanthomonadaceae RepID=B2SQJ5_XANOP Length = 215 Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/130 (36%), Positives = 73/130 (56%) Query: 4 PTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFR 63 P+ +++ D R + LL+ P++ P A AL+ EL RA++ P+++ DVVTM+SR++ Sbjct: 83 PSTLVSSHDLARREALLDSPSFNKHPAATALSDELGRARVLPPDQIRGDVVTMHSRIECE 142 Query: 64 NLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLE 123 + G V+P + + ++ V+APVG+AL GL VG I W P G L Sbjct: 143 DQLHGGRHTLPPVHPHEADVQHGRICVLAPVGSALGGLSVGQRIDWRTPDGRDLRLRATA 202 Query: 124 LEYQPEAAGD 133 + QP AAGD Sbjct: 203 VHDQPTAAGD 212 >UniRef50_A9MBQ4 GreA/GreB family elongation factor n=36 Tax=Brucella RepID=A9MBQ4_BRUC2 Length = 169 Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/123 (37%), Positives = 73/123 (59%), Gaps = 1/123 (0%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 +P I+++++D ER+ L + IA+ L AELDRA++ + + +P +VV M S V+ Sbjct: 7 KKPNIVVSEVDYERLMGLASNASERFEEIAEELMAELDRAKVVTAKRIPENVVQMGSTVE 66 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEV 121 FR +DG R TLVYP + + ++S++ P+G AL+GL G SI W G L V Sbjct: 67 FR-ANDGHERRVTLVYPGEADIAKNRISILTPIGTALIGLAPGQSISWTARDGKQHELNV 125 Query: 122 LEL 124 L++ Sbjct: 126 LKV 128 >UniRef50_A9GAI2 Regulator of nucleoside diphosphate kinase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GAI2_SORC5 Length = 140 Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 48/133 (36%), Positives = 75/133 (56%), Gaps = 6/133 (4%) Query: 6 IIINDLDAERIDILLE----QPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 I++ + D +R+ LLE +P P +AL E++RA + P ++P +VVTMNSRV+ Sbjct: 8 IVLTEFDRDRLARLLEALRARPG-GDSPNLEALEIEIERADVVKPADIPPNVVTMNSRVE 66 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEV 121 +L E T+V+P + ++SV+AP+G ALLG R D + W P L + Sbjct: 67 LVDLDTEERLCVTVVFPGNADVKSGRISVLAPMGLALLGCREADEVEWPTPSRT-RRLRI 125 Query: 122 LELEYQPEAAGDY 134 + YQPEA+G + Sbjct: 126 ERIAYQPEASGRF 138 >UniRef50_A1TUC9 GreA/GreB family elongation factor n=4 Tax=Burkholderiales RepID=A1TUC9_ACIAC Length = 136 Score = 81.3 bits (199), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 49/129 (37%), Positives = 71/129 (55%), Gaps = 5/129 (3%) Query: 7 IINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLS 66 ++ DLD R+ L Q P +L L+ A + S + DVVTM SRV+ + + Sbjct: 12 VLTDLDFARLSRLASQQ-----PAPPSLADLLENADVTSSRTVEADVVTMYSRVELVDTA 66 Query: 67 DGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 G +V T+ YP + +SV++PVG++LLGLRVG + W P G A V +++ Sbjct: 67 TGARQVLTICYPRDADLAAGFVSVLSPVGSSLLGLRVGQTARWCTPRGEACEATVAGIQH 126 Query: 127 QPEAAGDYL 135 QPEA GDYL Sbjct: 127 QPEAEGDYL 135 >UniRef50_A6X582 GreA/GreB family elongation factor n=3 Tax=Rhizobiales RepID=A6X582_OCHA4 Length = 142 Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 75/129 (58%), Gaps = 1/129 (0%) Query: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKF 62 +P I+++++D ER+ L + IA+ L ELDRA++ + +P +V+ M S V+F Sbjct: 8 KPNIVVSEIDYERLMGLATNVSERLEEIAEELMVELDRAKVVPAKRLPQNVIHMGSTVEF 67 Query: 63 RNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVL 122 R+ +DG+ R TLVYP + + ++S++ P+G AL+GL G SI W G L VL Sbjct: 68 RS-NDGQERRVTLVYPGEADIAQGKISILTPIGTALIGLAPGQSISWTARDGKQHELNVL 126 Query: 123 ELEYQPEAA 131 + + + + Sbjct: 127 SVSNEAQVS 135 >UniRef50_D1SYS0 GreA/GreB family elongation factor n=1 Tax=Acidovorax avenae subsp. avenae ATCC 19860 RepID=D1SYS0_9BURK Length = 139 Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/139 (39%), Positives = 74/139 (53%), Gaps = 9/139 (6%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 + P ++ DLD R+ L A LP A +L L A + + DVVTMNSRV Sbjct: 5 LPHPERVLTDLDFARLSKL----AARQLPPA-SLADLLATADVTGSRAVDADVVTMNSRV 59 Query: 61 KFR----NLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVA 116 + + +DG +V TL YP + ++SV++PVG +LLGLRVGD W P G Sbjct: 60 ELEGSGTDGADGARQVLTLCYPQDADAAAGRVSVLSPVGCSLLGLRVGDVAAWRTPQGED 119 Query: 117 THLEVLELEYQPEAAGDYL 135 V + +QPEAAGDYL Sbjct: 120 CRATVAAILHQPEAAGDYL 138 >UniRef50_C6X5Q8 Transcription elongation factor n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6X5Q8_FLAB3 Length = 170 Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 49/132 (37%), Positives = 74/132 (56%), Gaps = 4/132 (3%) Query: 6 IIINDLDAERI-DILLEQPAYAGLPIADA--LNAELDRAQMCSPEEMPHDVVTMNSRVKF 62 III D+ RI +++ + DA L EL A++ ++P DVVTMNS VK Sbjct: 38 IIITKQDSTRIHKSIMDAKKNNSIKAEDAERLLRELHSAKIVESADIPADVVTMNSVVKI 97 Query: 63 RNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVL 122 ++ V +VYP + + ++S+ +PV AAL+G V D I W +P G+ T + + Sbjct: 98 HFENNKTVTEFKIVYPEQANIKDRKISIFSPVAAALIGYSVNDEIDWIVPSGM-TKIIID 156 Query: 123 ELEYQPEAAGDY 134 E+ YQPEAAGD+ Sbjct: 157 EIIYQPEAAGDF 168 >UniRef50_A7HAZ2 GreA/GreB family elongation factor n=5 Tax=Myxococcaceae RepID=A7HAZ2_ANADF Length = 138 Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 52/122 (42%), Positives = 71/122 (58%), Gaps = 3/122 (2%) Query: 2 SRPTIIINDLDAERIDILLEQP-AYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 +R I + D +R+ L++Q A A+ L+AELDRA E P D+VTMN+RV Sbjct: 3 ARKPIHVTHADLDRLRALVDQHLAGRDARAAEQLDAELDRAVPI--EVAPPDLVTMNARV 60 Query: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE 120 F +L+ G R LVYP + ++SV+AP+GAALLGL VG+ I W LP G L Sbjct: 61 AFVDLASGVRRELVLVYPRDADVAAGRVSVLAPIGAALLGLSVGEEIDWPLPDGRVARLR 120 Query: 121 VL 122 +L Sbjct: 121 IL 122 >UniRef50_A9EFF1 GreA/GreB family elongation factor n=1 Tax=Oceanibulbus indolifex HEL-45 RepID=A9EFF1_9RHOB Length = 146 Score = 77.8 bits (190), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 44/127 (34%), Positives = 73/127 (57%), Gaps = 1/127 (0%) Query: 4 PTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFR 63 P +I+N D ++ L E + +AD E+ RAQ+ ++MP DVV + S+V +R Sbjct: 16 PHLILNAADLVHLEELAEGMMHRHPTLADRFFEEIGRAQIVEDQQMPGDVVGIGSKVTYR 75 Query: 64 NLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATH-LEVL 122 + + G+ + TLVYP + +Q+SV+ P+G ALLGLR G S +W+ H L +L Sbjct: 76 DETTGQNKSVTLVYPEDADITRSQVSVITPIGVALLGLREGASFYWDTRRENQRHMLTIL 135 Query: 123 ELEYQPE 129 ++E + + Sbjct: 136 KVEQRSD 142 >UniRef50_Q5QX12 Transcription elongation factor family protein n=1 Tax=Idiomarina loihiensis RepID=Q5QX12_IDILO Length = 129 Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 45/118 (38%), Positives = 68/118 (57%), Gaps = 5/118 (4%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLP--IADALNAELDRAQMCSPEEMPHDVVTMNSR 59 +RP I+I+ +D I+ L++ LP D L EL RA++ P MP +V +N + Sbjct: 7 TRPNIVISCVDMAVIEHHLDE---TRLPREFLDELEVELARAKIVEPNVMPANVACLNRQ 63 Query: 60 VKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVAT 117 V F+ L G+V +TL P ++ + LSV AP+GAAL+GL VG SI W+ G+ + Sbjct: 64 VTFKVLETGKVFTKTLTAPDQVDKYDDSLSVFAPLGAALIGLSVGQSIQWKTNRGLQS 121 >UniRef50_B7L307 GreA/GreB family elongation factor n=1 Tax=Methylobacterium chloromethanicum CM4 RepID=B7L307_METC4 Length = 147 Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 42/98 (42%), Positives = 57/98 (58%) Query: 34 LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93 L ELDRA + P +P VVTM++RV++R+ +VR TL YP + + +SV+ P Sbjct: 43 LAEELDRATVVPPGAVPPRVVTMHARVEYRDDVTDQVRCVTLTYPGEEDAYASGISVLTP 102 Query: 94 VGAALLGLRVGDSIHWELPGGVATHLEVLELEYQPEAA 131 VGAAL+GL G SI W P G L VL + + P A Sbjct: 103 VGAALVGLSEGHSIRWRTPSGGLRGLTVLRVRFAPHHA 140 >UniRef50_A7HFE1 GreA/GreB family elongation factor n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HFE1_ANADF Length = 164 Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 47/139 (33%), Positives = 73/139 (52%), Gaps = 8/139 (5%) Query: 6 IIINDLDAERIDILLEQPAYAGLPIADA--------LNAELDRAQMCSPEEMPHDVVTMN 57 +++ + DA R+ L + + + ADA L L A + P+ +P +VVTM Sbjct: 26 LLLTEQDAARLRATLARASLESMASADARGENAVELLATALRSAIVVPPDRIPAEVVTMR 85 Query: 58 SRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVAT 117 SR+ +++ G R LVYP + +SV++PVG ALLGL G + W LP G Sbjct: 86 SRLVLEDVASGARREVVLVYPEEERTHEGHVSVLSPVGVALLGLSEGALVGWPLPSGRTA 145 Query: 118 HLEVLELEYQPEAAGDYLL 136 L+V ++YQPEA ++ L Sbjct: 146 VLQVESVQYQPEAVEEFHL 164 >UniRef50_Q5P744 Transcription elongation factor n=3 Tax=Proteobacteria RepID=Q5P744_AZOSE Length = 158 Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 42/94 (44%), Positives = 59/94 (62%) Query: 34 LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93 L AEL+RA + P+ +P VVTM+SRV++ + + GE R +VYP + + ++SV AP Sbjct: 58 LRAELERAVVVPPDFLPRHVVTMHSRVRYLDEASGEQREIQVVYPEEADVAAGKVSVFAP 117 Query: 94 VGAALLGLRVGDSIHWELPGGVATHLEVLELEYQ 127 VGAALLGL V I W+ P G L V E+ +Q Sbjct: 118 VGAALLGLSVDQVIEWDFPRGPRRRLRVEEVLHQ 151 >UniRef50_Q4KB20 Acetyltransferase, GNAT family family n=9 Tax=Bacteria RepID=Q4KB20_PSEF5 Length = 379 Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 47/131 (35%), Positives = 74/131 (56%), Gaps = 6/131 (4%) Query: 6 IIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNL 65 I I ++D R++ L+ + P L EL+RA + P+++ +V+TMNSR L Sbjct: 255 IYITEIDKARLESLI---VFEQGPTIVELEHELERAIVVKPQQVARNVITMNSRALL-QL 310 Query: 66 SDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 D E+ V LVYP + + SV + +GAA+LG + GD+I W + +E+ ++ Sbjct: 311 DDEEIEV-ALVYPEDADSTAGKHSVYSDIGAAILGYQEGDTIDWRI-SDRTRRIEIRKVL 368 Query: 126 YQPEAAGDYLL 136 YQPEAAGD+ L Sbjct: 369 YQPEAAGDFHL 379 >UniRef50_Q13WN5 GreA/GreB family elongation factor n=50 Tax=Burkholderia RepID=Q13WN5_BURXL Length = 136 Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 45/132 (34%), Positives = 73/132 (55%), Gaps = 1/132 (0%) Query: 5 TIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRN 64 T + +LD R++ P A + D L+ L+RA + E+P +VVTMNS+ + Sbjct: 6 TCYLTELDVARLEKHAAAPG-ADARLQDMLDDVLERAVIVDSHEIPANVVTMNSQATLVD 64 Query: 65 LSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 + GE T+VYP ++ +L+V +P G ALLG + G+ I + P G L++ ++ Sbjct: 65 ETSGEHMTWTVVYPPNADFAHGRLNVFSPAGLALLGAKRGERIRFTPPSGTEKVLKLEKI 124 Query: 125 EYQPEAAGDYLL 136 +QPEAA D+ L Sbjct: 125 LFQPEAADDFTL 136 >UniRef50_B8IFL5 GreA/GreB family elongation factor n=8 Tax=Methylobacterium RepID=B8IFL5_METNO Length = 141 Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 44/123 (35%), Positives = 65/123 (52%) Query: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKF 62 +P I + D ER+ L +A L ELDRAQ+ + V M +V+F Sbjct: 14 KPRIKMTVEDHERLSALAAAAQDRMPDVASCLADELDRAQIVAGRGRLPPFVRMGCQVEF 73 Query: 63 RNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVL 122 R+ + G V++ TLVYP + ++SV+ P+GAAL+GL G SI WE G+ L VL Sbjct: 74 RDDTTGRVQIVTLVYPGEANIEQGKISVLTPIGAALIGLSTGQSITWETRSGLTKSLTVL 133 Query: 123 ELE 125 ++ Sbjct: 134 DVR 136 >UniRef50_Q2GA51 GreA/GreB family elongation factor n=1 Tax=Novosphingobium aromaticivorans DSM 12444 RepID=Q2GA51_NOVAD Length = 159 Score = 74.7 bits (182), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 36/80 (45%), Positives = 52/80 (65%) Query: 30 IADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLS 89 I+ L E+ RAQ+ +++P D V M S V+FR+ + G VR TLVYPA+ + ++S Sbjct: 57 ISRMLMEEIGRAQIVPAQDLPPDAVAMRSVVRFRDEATGAVRTVTLVYPAEADIAQDRVS 116 Query: 90 VMAPVGAALLGLRVGDSIHW 109 ++ PVGA L+GLR G SI W Sbjct: 117 ILTPVGAGLIGLRAGQSIDW 136 >UniRef50_C6XWY5 Transcription elongation factor GreA/GreB domain protein n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XWY5_PEDHD Length = 125 Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 36/93 (38%), Positives = 54/93 (58%), Gaps = 1/93 (1%) Query: 32 DALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVM 91 + L AEL A + + EE+P DVV + S + N+ G+ LV P + ++SV Sbjct: 31 EKLQAELKAATIYTEEELPSDVVCLKSEARIANVKTGKEFTFKLVMPEEANIKAQKVSVF 90 Query: 92 APVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 AP+G AL G R GDSI+WE+P G+ ++LE+ Sbjct: 91 APIGIALFGYRTGDSINWEMPDGI-QEFKILEV 122 >UniRef50_Q0BZP7 Regulatory protein n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0BZP7_HYPNA Length = 128 Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 47/125 (37%), Positives = 72/125 (57%), Gaps = 4/125 (3%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 ++RP I + D + ER+ L P AD L EL RA++ + E++P DVV M+ RV Sbjct: 4 ITRPPIYVTDAELERLSDL-AHAVQGREPAADMLIEELSRARVTAVEDVPVDVVRMHDRV 62 Query: 61 KFRNLSDG-EVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHL 119 F + DG TLVYP + ++ ++S++ VGA L+GL+VGD++ W G + Sbjct: 63 NF--VYDGARYEDFTLVYPYEANIADKRISILTQVGAMLIGLQVGDAMQWAGRDGRGHSM 120 Query: 120 EVLEL 124 EVLE+ Sbjct: 121 EVLEV 125 >UniRef50_C0N448 Putative uncharacterized protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N448_9GAMM Length = 137 Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 73/135 (54%), Gaps = 2/135 (1%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 + +P I + LD R++ L+ P+ +L EL+RA++ ++P D+V+MNS V Sbjct: 2 IHQPDIYVASLDLIRLEDLINTLWNKHSPVRLSLEDELERAKIIDSFQLPDDIVSMNSTV 61 Query: 61 K-FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHL 119 + + SD V + TLVYP M + LS+++P+G ALLG++ G+ +W G Sbjct: 62 ELWVTKSDFPVYM-TLVYPYGMKKDGSTLSILSPIGTALLGIKQGEEFYWPGRDGRNIKA 120 Query: 120 EVLELEYQPEAAGDY 134 + + YQPE Y Sbjct: 121 RLENILYQPERERHY 135 >UniRef50_A8LN19 GreA/GreB family elongation factor n=8 Tax=Alphaproteobacteria RepID=A8LN19_DINSH Length = 148 Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/131 (35%), Positives = 66/131 (50%), Gaps = 2/131 (1%) Query: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKF 62 RP I+IN D I+ L E +AD L E+ RA++ +MP +V+ + F Sbjct: 18 RPRIVINADDLSHIEALAEGAMDRNPALADRLLEEIARARIVPAAKMPLNVIGIGKSATF 77 Query: 63 RNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVL 122 R+ + G+ R TLVYP S ++SVM P+G ALLGL G HW G L V+ Sbjct: 78 RDETTGQERTVTLVYPEDADISRARVSVMTPIGVALLGLAEGAVFHWNTRGEERRMLTVI 137 Query: 123 ELE--YQPEAA 131 + PE+A Sbjct: 138 RVSDPAAPESA 148 >UniRef50_A6EIL5 Nucleoside diphosphate kinase regulator protein, putative n=1 Tax=Pedobacter sp. BAL39 RepID=A6EIL5_9SPHI Length = 129 Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 52/83 (62%) Query: 33 ALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMA 92 +L+AEL RA + S EE P D + +NS V+ ++ S GE+ +V P ++SV+ Sbjct: 34 SLSAELSRAVILSNEEFPSDAIRLNSTVRIQDESTGEIMELIIVLPQHANIKEKKISVLT 93 Query: 93 PVGAALLGLRVGDSIHWELPGGV 115 P+ AAL+G R GD++ W++P G+ Sbjct: 94 PIAAALIGFRQGDAVQWKVPAGL 116 >UniRef50_Q74EX3 Nucleoside diphosphate kinase regulator protein, putative n=1 Tax=Geobacter sulfurreducens RepID=Q74EX3_GEOSL Length = 135 Score = 71.6 bits (174), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 76/135 (56%), Gaps = 3/135 (2%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 M I + + D R++ +L+ + L EL A + P+++P +VVTMNSRV Sbjct: 1 MDTRAIYVTEDDLSRLEEILDTIPFRDRKDLQKLEDELASAMIVDPKDVPPNVVTMNSRV 60 Query: 61 KFRNL-SDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHL 119 K R+L +D E+ + +LV+P + ++S+++P+G A+LG GD++ + A + Sbjct: 61 KLRDLRADKEMTI-SLVFPNDANIAEGKISILSPIGTAILGFGAGDTLDLAV-RSFAKKI 118 Query: 120 EVLELEYQPEAAGDY 134 + E+ YQP AAG + Sbjct: 119 RIEEVLYQPGAAGSH 133 >UniRef50_C0A6F4 GreA/GreB family elongation factor n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A6F4_9BACT Length = 148 Score = 68.6 bits (166), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 37/96 (38%), Positives = 55/96 (57%), Gaps = 2/96 (2%) Query: 34 LNAELDRAQMCSPEE-MPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMA 92 L AE DRA + + MP VVT++ V+ ++L E+ TL P ++S++A Sbjct: 37 LRAEFDRALIIEDDTAMPDGVVTLHCEVRLQDLDTNEIETYTLTLPEHADPEAHRISILA 96 Query: 93 PVGAALLGLRVGDSIHWELPGGVATHLEVLELEYQP 128 P+G ALLG +V + + WE+PGG A L +LE QP Sbjct: 97 PIGTALLGYQVDNVVTWEMPGG-ARRLRILEARRQP 131 >UniRef50_A7IJH2 GreA/GreB family elongation factor n=4 Tax=Rhizobiales RepID=A7IJH2_XANP2 Length = 143 Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 45/123 (36%), Positives = 68/123 (55%), Gaps = 4/123 (3%) Query: 4 PTIIINDLDAERIDILLEQPAYAGLP-IADALNAELDRAQMCSPEEMPHDVVTMNSRVKF 62 P ++++ D ER+ L A +P +A+ L AELDRA++ +P V M S+V + Sbjct: 16 PALVLSHPDHERL-AGLATAALDRIPDVAEELLAELDRARLVPIGRVPATAVQMGSKVTY 74 Query: 63 RNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVL 122 + G R TLVYP + ++SVM P+GAAL+GL G SI W G L+V+ Sbjct: 75 E--AGGNARTVTLVYPEDADIAAARVSVMTPIGAALIGLSKGQSICWTARDGRRHELKVI 132 Query: 123 ELE 125 E++ Sbjct: 133 EVQ 135 >UniRef50_Q15Z69 GreA/GreB family elongation factor n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15Z69_PSEA6 Length = 128 Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 42/126 (33%), Positives = 70/126 (55%), Gaps = 8/126 (6%) Query: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALNA---ELDRAQMCSPEEMPHDVVTMNSR 59 +P III+ D ++ LE+ + LP DA+ A ELDRA + + +++P +VV + S+ Sbjct: 4 QPDIIISTADLAELEYQLER---SKLP-DDAIRAIENELDRATIVACKDLPENVVAIGSQ 59 Query: 60 VKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHL 119 V F+ L +V + L P +SV AP+G+AL+GL G I W+ G + Sbjct: 60 VTFKILDSQKVFTKALCLPHDSVKFEDSISVFAPIGSALIGLSTGQCIKWQTQRG-QQSV 118 Query: 120 EVLELE 125 E++++E Sbjct: 119 EIIKVE 124 >UniRef50_B0T793 GreA/GreB family elongation factor n=1 Tax=Caulobacter sp. K31 RepID=B0T793_CAUSK Length = 141 Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 1/108 (0%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 ++PTI + + D E + L + PA L E+ RA + P + P V + SR+ Sbjct: 18 AQPTIYVTEQDFEILSNLADAPAGRAFG-GRVLAHEMARALIVEPGQAPLPFVRIGSRID 76 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHW 109 +R+LS+G+ R L P + + ++SV++PVGAAL+G+ G + HW Sbjct: 77 YRDLSNGQTRSVRLSLPRDASIDDNRISVLSPVGAALVGMTAGQAFHW 124 >UniRef50_C6WYK0 GreA/GreB family elongation factor n=2 Tax=Methylophilaceae RepID=C6WYK0_METML Length = 125 Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 66/124 (53%), Gaps = 9/124 (7%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 M +I++D D R+ +L + L EL RA + +++P DVV +NSRV Sbjct: 2 MEIDKLILSDQDYARLSMLAND---------ELLGDELSRAIVVPADQVPADVVRINSRV 52 Query: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE 120 + + S G R LV+P ++SV++PVG+ALLGL+ G I W P G + L+ Sbjct: 53 IYLDESSGLSREVELVFPEGADLKFGKISVLSPVGSALLGLKEGQVIDWPFPHGQSRRLK 112 Query: 121 VLEL 124 V+ + Sbjct: 113 VVSV 116 >UniRef50_C7CFG6 Putative regulator n=1 Tax=Methylobacterium extorquens DM4 RepID=C7CFG6_METED Length = 149 Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 40/104 (38%), Positives = 56/104 (53%) Query: 4 PTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFR 63 P I + D +R+ G AD L EL RA +C P +P +VV++N RV +R Sbjct: 8 PPITVTTRDFDRLVAFSLDAHLRGDSHADFLLWELKRATLCPPCALPSEVVSVNCRVLYR 67 Query: 64 NLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSI 107 + VRV L +P + + LSV +P+G ALLGLRVGD + Sbjct: 68 LDDEPGVRVHLLAHPDDLINLADGLSVASPLGTALLGLRVGDRM 111 >UniRef50_A5VGM9 GreA/GreB family elongation factor n=1 Tax=Sphingomonas wittichii RW1 RepID=A5VGM9_SPHWW Length = 137 Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 43/110 (39%), Positives = 62/110 (56%), Gaps = 6/110 (5%) Query: 3 RPTIIINDLDAERIDIL--LEQPAYAGLP-IADALNAELDRAQMCSPEEMPHDVVTMNSR 59 RP I + D +A DIL L A LP ++ L EL RA + + +P D+VTM+S Sbjct: 9 RPPIHMIDSEA---DILADLATSAATRLPQVSQLLLEELGRATIHKADRIPGDIVTMHSV 65 Query: 60 VKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHW 109 V+F + + G+ LVYP + ++S++ PVGA L+GLR G SI W Sbjct: 66 VQFTDAASGKEHRYQLVYPKDADIAEGRISILTPVGAGLIGLRAGQSILW 115 >UniRef50_A7HXN2 GreA/GreB family elongation factor n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HXN2_PARL1 Length = 133 Score = 65.1 bits (157), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 48/129 (37%), Positives = 72/129 (55%), Gaps = 9/129 (6%) Query: 5 TIIINDL-----DAERIDIL--LEQPAYAGLP-IADALNAELDRAQMCSPEEMPHDVVTM 56 TI+++DL E+ D L + + LP +A L+ EL+RA++ +P DVV + Sbjct: 3 TIVVDDLPQIVVAEEQFDALSDIAEGLTGVLPHVAGFLDRELNRARLLPLAHVPSDVVKV 62 Query: 57 NSRVKFRNLSDGE-VRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGV 115 NS V+F + GE V L +PA+ T + +S+ +PVG ALLGLR G SI W G Sbjct: 63 NSTVEFTLDTRGERVERLKLAFPAESTAGDGYVSIASPVGVALLGLREGQSIEWTSRYGE 122 Query: 116 ATHLEVLEL 124 L+VL++ Sbjct: 123 RRSLKVLKV 131 >UniRef50_A3PS97 GreA/GreB family elongation factor n=4 Tax=Rhodobacter sphaeroides RepID=A3PS97_RHOS1 Length = 137 Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/129 (34%), Positives = 65/129 (50%), Gaps = 4/129 (3%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLP-IADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 SRP I + + ER+D L A A LP +A L +L A++ +P + DVVT+ S V Sbjct: 8 SRPAIDMTLI--ERLDTL-AGAAIARLPDVAYPLITKLTSARLLAPARLSSDVVTIGSEV 64 Query: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE 120 + + R TL +P S +S++ PVG ALLGL GD W+ G L Sbjct: 65 LYHDDQGARDRRVTLSWPEDADISRRSVSILTPVGVALLGLSAGDRFQWQTRAGERRSLT 124 Query: 121 VLELEYQPE 129 VL++ +P Sbjct: 125 VLQVGSEPR 133 >UniRef50_A5V983 GreA/GreB family elongation factor n=1 Tax=Sphingomonas wittichii RW1 RepID=A5V983_SPHWW Length = 166 Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 66/129 (51%) Query: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKF 62 RP I + D +AE + + +++ L E+DRA + +P DVVTM+S V+F Sbjct: 38 RPAIHMIDSEAETLANMAVAAEERIPQVSELLLEEIDRATLYKAARIPADVVTMHSHVEF 97 Query: 63 RNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVL 122 + ++G R LVYP ++S++ VGA L+GLR G SI W G L + Sbjct: 98 VDEANGTSRTVQLVYPKDADIDAGRVSILTLVGAGLIGLREGQSILWPGRDGHRRLLTIT 157 Query: 123 ELEYQPEAA 131 + + EAA Sbjct: 158 RVSREAEAA 166 >UniRef50_B0T7C4 GreA/GreB family elongation factor n=1 Tax=Caulobacter sp. K31 RepID=B0T7C4_CAUSK Length = 139 Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 68/125 (54%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 ++RP II+ + +A+R+ L + A AD L E++RA++ + +MP VV M S V Sbjct: 8 VARPDIILAETEADRLSALATRLRDAAPQAADLLLEEIERAEIRADLDMPRTVVRMESVV 67 Query: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE 120 +F + + G R LVYP + ++SV++ VGA L+GL +I W G L Sbjct: 68 QFVDEAHGNPRTVLLVYPRDADIAAGKVSVLSFVGAGLIGLSPHQAIQWPDRNGRQRTLR 127 Query: 121 VLELE 125 +L++ Sbjct: 128 ILKVR 132 >UniRef50_Q930S2 Putative uncharacterized protein n=1 Tax=Sinorhizobium meliloti RepID=Q930S2_RHIME Length = 140 Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/111 (36%), Positives = 59/111 (53%), Gaps = 5/111 (4%) Query: 19 LLEQPAYAGLP----IADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRT 74 LL + AY L IA L +L+R + +++P DVV + S V + DG R + Sbjct: 22 LLSRLAYQALSRDFDIAAELIEKLERPCVLPDDQVPPDVVKIGSIVTC-EVEDGPCRTFS 80 Query: 75 LVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 LVYP + ++SV+ PVG ALLGLR G ++ W G HL V+ +E Sbjct: 81 LVYPDDVDAEKGRISVLTPVGVALLGLRPGQAVEWFSRDGQRNHLIVVRVE 131 >UniRef50_C0QME5 GreA2 n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QME5_DESAH Length = 95 Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 26/49 (53%), Positives = 35/49 (71%) Query: 88 LSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEYQPEAAGDYLL 136 +S++APVG+ALLGL +GD I W PGG + + E+ YQPE +GDY L Sbjct: 47 ISILAPVGSALLGLSIGDKIEWPKPGGGNLKVRITEIIYQPERSGDYQL 95 >UniRef50_C6VSR5 GreA/GreB family elongation factor n=2 Tax=Sphingobacteriales RepID=C6VSR5_DYAFD Length = 134 Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 56/97 (57%), Gaps = 1/97 (1%) Query: 33 ALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMA 92 +L EL+RA + E+P + +NS VK R + + ++V P + ++S++ Sbjct: 35 SLAYELNRAVVVEDNELPAGSIRLNSYVKVRETTTNKEMAFSIVMPKDADIAKQRISILT 94 Query: 93 PVGAALLGLRVGDSIHWELPGGVATHLEVLELEYQPE 129 P+GAAL+GL G+++ W++P G+ ++L++ Y E Sbjct: 95 PMGAALIGLCKGETVEWKMPAGI-RRFKILDVWYDQE 130 >UniRef50_B8IHN9 GreA/GreB family elongation factor n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IHN9_METNO Length = 147 Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 59/108 (54%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 S P I I++ D +R+ + G L +EL+RA +C E+P VV+ N RV Sbjct: 6 SLPPITISNYDFDRLVVYGLTAYMHGDRNVVFLFSELERATVCPAMELPDQVVSANCRVI 65 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHW 109 +R + +R LV+P + + ++S +P+G ALLGL+VGD + + Sbjct: 66 YRIDDEPCLRAHMLVHPCDLISPDDEISAGSPLGIALLGLKVGDRMPF 113 >UniRef50_Q98F06 Nucleoside diphosphate kinase regulator n=2 Tax=Mesorhizobium RepID=Q98F06_RHILO Length = 140 Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 39/114 (34%), Positives = 58/114 (50%), Gaps = 3/114 (2%) Query: 3 RPT--IIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 RP+ I+I+D D +R+ L A+ L E+DRA + MP DVV M S V Sbjct: 8 RPSSRILISDTDHDRLTGLARALLDRAPETAEELLFEMDRAVVTDAAAMPADVVRMGSAV 67 Query: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGG 114 R R+ LVYP + + ++SV+ P+G AL+G +G ++ W GG Sbjct: 68 TVRGEGGATQRI-MLVYPGEADIAENRISVLTPMGTALIGASIGQAVCWSSRGG 120 >UniRef50_B1ZD84 GreA/GreB family elongation factor n=4 Tax=Methylobacterium RepID=B1ZD84_METPB Length = 149 Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 39/110 (35%), Positives = 58/110 (52%), Gaps = 2/110 (1%) Query: 2 SRPTIIINDLDAERIDILLEQPAYA-GLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 RP I + D +R+ + AY G P AD L ++L+RA + P DVV + RV Sbjct: 6 KRPPITLPTYDFDRL-VASGLAAYQRGDPYADLLLSKLERAASFAASPPPRDVVAVTCRV 64 Query: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWE 110 ++R + VR LVYP + S ++S + +G A+LGLR GD I + Sbjct: 65 RYRLDDEPTVRAHRLVYPGHVIASEEEISAASALGVAMLGLRRGDRIPFR 114 >UniRef50_Q3SU57 GreA/GreB family elongation factor n=9 Tax=Bradyrhizobiaceae RepID=Q3SU57_NITWN Length = 151 Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 66/136 (48%), Gaps = 11/136 (8%) Query: 4 PTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQM----------CSPEEMPHDV 53 P I I+ D +R+ L E A+ L E+DRA++ + ++ Sbjct: 11 PAIAISAHDIDRLRHLAEAAIEKYPATAEFLAREIDRAEIIPADGSLLDDTRDQRWKVNL 70 Query: 54 VTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPG 113 VTM S V F + G+ R TLVYP ++S+++P+GAAL+GL G SI ++ P Sbjct: 71 VTMQSEVTFIDDVSGQKRRVTLVYPEDADVDAGKISILSPIGAALIGLSAGQSIEFQTPS 130 Query: 114 GVATHLEVLEL-EYQP 128 G L V+ + Y P Sbjct: 131 GGWRSLTVIAVWSYWP 146 >UniRef50_A5FHU8 GreA/GreB family elongation factor n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FHU8_FLAJ1 Length = 132 Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 1/114 (0%) Query: 4 PTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFR 63 PT +D R +++L+ A+ L+ ELDRA + E+ V+ +NS V Sbjct: 5 PTFCKSDYQFLR-ELILKSKNSTNTKEANQLSQELDRAVISKESELDSSVIRINSLVTIE 63 Query: 64 NLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVAT 117 ++ + +V P+ +++S++AP+ A++G + D + WELP G+ T Sbjct: 64 DVKANKQMKIQIVLPSYADVKQSKISILAPLSVAIIGFKENDEVDWELPAGIKT 117 >UniRef50_B4RF21 Transcription elongation factor n=2 Tax=cellular organisms RepID=B4RF21_PHEZH Length = 214 Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 46/112 (41%), Positives = 63/112 (56%), Gaps = 6/112 (5%) Query: 4 PTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFR 63 PT+ + + D +R LL + G P A+ L ELDRA + E V + S V++R Sbjct: 95 PTVRVAEADYDR---LLNLADHDG-PGAELLARELDRAIVVREGEKSRPFVRLGSTVEYR 150 Query: 64 NLSDGEVRVRTLVYP-AKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGG 114 + +VR LV P A D+N +LSV++PVGAALLGL VGD+ W P G Sbjct: 151 DRLTEKVRTVELVPPDAADIDAN-RLSVLSPVGAALLGLSVGDTFSWTAPDG 201 >UniRef50_B1ZU20 GreA/GreB family elongation factor n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZU20_OPITP Length = 143 Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 2/104 (1%) Query: 12 DAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVR 71 D ++ +L + G P L +EL R + +P + + S V+ +L GE+ Sbjct: 12 DYTKLSLLATATSRPGTP--SQLRSELSRGVVVDATALPPTAIRLGSTVEIEDLESGEIE 69 Query: 72 VRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGV 115 TLV P + +LSV+AP+G A++G G + W PGG Sbjct: 70 TYTLVLPEQANVDARKLSVLAPIGTAVIGCLQGAEVAWSTPGGT 113 >UniRef50_A6EMP4 Transcription elongation factor n=4 Tax=Bacteroidetes RepID=A6EMP4_9BACT Length = 139 Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 1/81 (1%) Query: 34 LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93 LN EL A + EEMP DV+ NS+V + +G + +V PA ++S++ Sbjct: 38 LNEELKTAIIVDEEEMPTDVIRFNSQV-LISTKNGWKKEFQIVSPALKDVKADKISILTV 96 Query: 94 VGAALLGLRVGDSIHWELPGG 114 +GAAL G GD++ WE P G Sbjct: 97 MGAALFGYAQGDTVEWEFPTG 117 >UniRef50_A0LZA7 Transcription elongation factor n=1 Tax=Gramella forsetii KT0803 RepID=A0LZA7_GRAFK Length = 146 Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 2/93 (2%) Query: 33 ALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMA 92 LN EL A++ + EMP DV+ +NS V E R +V P K ++SV+A Sbjct: 37 KLNEELKDARILTNSEMPLDVIRLNSLVTIETPYAVE-RTYQIVTPEKGDIRKNKISVLA 95 Query: 93 PVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 P+G AL G GD+I W P G +++++ E++ Sbjct: 96 PMGLALFGYAQGDNITWTFPLG-ESYIKIKEVK 127 >UniRef50_A4CMB9 Nucleoside diphosphate kinase regulator n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CMB9_9FLAO Length = 139 Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 2/95 (2%) Query: 34 LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93 L ELD A++ EM +DVV +S + + +G R LV P + S ++S++ P Sbjct: 38 LLTELDSAKIVDEAEMQNDVVRFHSIITVTS-ENGWSRRVQLVLPPERDVSKDKISILTP 96 Query: 94 VGAALLGLRVGDSIHWELPGGVATHLEVLELEYQP 128 +G AL G GD++ WE P G L + ++E +P Sbjct: 97 MGIALFGYAEGDTVSWEFPSG-PKRLRIEKVEQEP 130 >UniRef50_B4RBL2 Transcription elongation factor n=1 Tax=Phenylobacterium zucineum HLK1 RepID=B4RBL2_PHEZH Length = 143 Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/126 (35%), Positives = 61/126 (48%), Gaps = 6/126 (4%) Query: 2 SRPTIIINDLD-AERIDILLEQP-AYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSR 59 S P + + D + A DI+ P A GL + L EL RA + P DVV + S Sbjct: 9 SNPRVTVLDEEYAPLADIVCGSPRATPGLAL---LWNELSRATLVQAGRAPADVVRLGSA 65 Query: 60 VKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHL 119 V++ +L+ E R LV P + + V +GAALLGLR GD HW P G L Sbjct: 66 VEYTDLTRRESRRIRLVLPREARPPALE-PVSGTIGAALLGLRPGDVFHWRAPSGELRSL 124 Query: 120 EVLELE 125 +V +E Sbjct: 125 QVDAVE 130 >UniRef50_Q13CU9 Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris BisB5 RepID=Q13CU9_RHOPS Length = 156 Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 61/127 (48%), Gaps = 2/127 (1%) Query: 4 PTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFR 63 P + I D R+ + Q + P+ L +EL+RA + P V ++ V FR Sbjct: 3 PPVSIASRDFGRLRQIAVQALASRDPVGRFLFSELERAVVID-SPAPPLTVRLDDWVTFR 61 Query: 64 NLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLE 123 D + R LV P + LSV++PVGAAL+GLR G +H++ GV H+ +E Sbjct: 62 ADDDQPLESRILVLPGHYRRNALHLSVLSPVGAALVGLRPGARMHYQGVDGV-QHVATVE 120 Query: 124 LEYQPEA 130 PE Sbjct: 121 SLEPPEG 127 >UniRef50_A7HXN3 GreA/GreB family elongation factor n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HXN3_PARL1 Length = 171 Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 1/102 (0%) Query: 29 PIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQL 88 P+ + A+L+ A++ S E+ V T+ S V++R + D + R L + + L Sbjct: 48 PMQPFVRAKLEEARIVSGNEIAETVATLGSIVRYR-IEDRMLERRLLQLDNRHAPNGQYL 106 Query: 89 SVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEYQPEA 130 SV+ P+G ALLG GD EL G + + +E+QPEA Sbjct: 107 SVLTPIGLALLGRSTGDLCEAELFNGAKLTIRIALIEHQPEA 148 >UniRef50_C6XVH8 Transcription elongation factor n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XVH8_PEDHD Length = 125 Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 52/87 (59%) Query: 32 DALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVM 91 + L EL A+ +++P DVVT+N+RV+ + L G TLV PAK + + LS++ Sbjct: 30 EKLEQELRNARQILSKDIPADVVTVNTRVRVKELETGAEFNYTLVPPAKARNKHNTLSIL 89 Query: 92 APVGAALLGLRVGDSIHWELPGGVATH 118 +P+G A++G G + WE+P G+ + Sbjct: 90 SPIGVAMVGYSQGSELKWEMPEGIKAY 116 >UniRef50_A5FHJ3 GreA/GreB family elongation factor n=3 Tax=Flavobacteriaceae RepID=A5FHJ3_FLAJ1 Length = 143 Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 1/79 (1%) Query: 47 EEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDS 106 + +P DVV++N +V +++ + + + LV P K+ S ++SV++ G A++G +VGD Sbjct: 63 KNLPEDVVSVNRKVTYKDHNTNQEKTILLVGPEKVKVSKNKISVLSDEGIAMVGYKVGDL 122 Query: 107 IHWELPGGVATHLEVLELE 125 I W G LE+L++E Sbjct: 123 IEWPAKKG-HLKLEILKVE 140 >UniRef50_Q98F07 Nucleoside diphosphate kinase regulator; Rnk n=2 Tax=Mesorhizobium RepID=Q98F07_RHILO Length = 180 Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 1/132 (0%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 M + D ++++LE+ PI L +L A + + + D+VT+NSRV Sbjct: 1 MKSTNCCLTTKDRAVLEVMLERRRAFADPIVHVLEHKLSSADVVPIDTVGPDIVTLNSRV 60 Query: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE 120 F ++ G + RTLV + LSV G +LG+ G + E G + Sbjct: 61 VF-SIDAGHAQTRTLVQNEVRGPVGSSLSVATRRGLCMLGMAQGQTASIEHADGRRESIL 119 Query: 121 VLELEYQPEAAG 132 + + YQPEAAG Sbjct: 120 IKAVLYQPEAAG 131 >UniRef50_B4W8F1 Putative uncharacterized protein n=1 Tax=Brevundimonas sp. BAL3 RepID=B4W8F1_9CAUL Length = 141 Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 5/132 (3%) Query: 2 SRPTIIINDLDAERIDILL-EQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 SRP I ++ D + + L+ + PA +A L EL+RA +C P + P ++ + Sbjct: 12 SRPDIFLSARDHQTLSRLVGDMPAEG---VAGLLQEELERAVICEPGDRPRGAAPLHRWL 68 Query: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE 120 + + + R +V P + ++SV++ VGA L+GL G +I W P G L Sbjct: 69 HYVDGRSPQPRRIQIVLPNEADIDAGKVSVLSYVGAGLIGLVEGHTIAWTDPSGADRRLT 128 Query: 121 VLELEYQPEAAG 132 + +E PE G Sbjct: 129 PVMIE-DPETPG 139 >UniRef50_B9KZF4 Transcription elongation factor greA n=2 Tax=Thermomicrobia (class) RepID=B9KZF4_THERP Length = 156 Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 2/77 (2%) Query: 38 LDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAA 97 L RAQM + P D V + SRV + +G V +V P + + ++S+ +PVGAA Sbjct: 72 LRRAQMIT-RAGPQDEVRLGSRVTVID-EEGSVETWVIVSPEEANAAQGRISIESPVGAA 129 Query: 98 LLGLRVGDSIHWELPGG 114 LLG RVG ++ PGG Sbjct: 130 LLGKRVGTTVTVRAPGG 146 >UniRef50_A6LPL4 Transcription elongation factor greA n=30 Tax=Clostridia RepID=GREA_CLOB8 Length = 160 Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 1/85 (1%) Query: 38 LDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAA 97 L A + E+P D+V++ S+VK ++ E ++V A+ N ++S +PVG A Sbjct: 72 LKNAVVVDESEIPSDIVSVGSKVKVKDYEFDEEVEYSIVGSAEADPMNFKISNESPVGNA 131 Query: 98 LLGLRVGDSIHWELPGGVATHLEVL 122 L+G +VGD + +P GV E+L Sbjct: 132 LVGKKVGDVVEVTVPDGV-NKFEIL 155 >UniRef50_A5FRA2 Transcription elongation factor n=3 Tax=Dehalococcoides RepID=A5FRA2_DEHSB Length = 266 Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 43/83 (51%) Query: 37 ELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGA 96 EL A++ + V M + VK R+L +GE + TLV P ++ ++S +P+G Sbjct: 177 ELKHAEVSEYTDNNTSKVNMGNTVKLRDLKNGEQCIYTLVSPKEIEPLKGRISASSPIGK 236 Query: 97 ALLGLRVGDSIHWELPGGVATHL 119 AL GD+I E+P G ++ Sbjct: 237 ALFNRSKGDNIEIEVPSGTLQYV 259 >UniRef50_UPI00016C498C transcription elongation factor greA n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C498C Length = 161 Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 1/93 (1%) Query: 32 DALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVM 91 DAL+ L RA + +P D V S+V+ ++ E LV P + ++ Sbjct: 65 DALSDRLSRAVIVDTSNLPKDTVAFGSKVRVLDVDVDEEETFELVSPGQENPDKGRILTG 124 Query: 92 APVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 +P+G L+G + GD++ ++P G ++LE+ Sbjct: 125 SPIGQGLIGRKKGDTVEIQVPSGT-IKFKILEI 156 >UniRef50_Q3ATA7 Transcription elongation factor greA n=13 Tax=Bacteria RepID=GREA_CHLCH Length = 160 Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 2/96 (2%) Query: 34 LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSD-GEVRVRTLVYPAKMTDSNTQLSVMA 92 L ++L A + P+++ D V + + VK RNL + E+ TLV + ++SV + Sbjct: 66 LESKLSAATILDPKQIKTDKVYILTSVKLRNLDNPDEIIEYTLVSSEEADTDAGKISVRS 125 Query: 93 PVGAALLGLRVGDSIHWELPGGVATHLEVLELEYQP 128 PVG +L+G VG + +P G H E+LE+ +P Sbjct: 126 PVGRSLIGKTVGAKVTIVVPKG-ELHYEILEIFVKP 160 >UniRef50_Q0B0N4 Transcription elongation factor greA n=6 Tax=Clostridia RepID=GREA_SYNWW Length = 159 Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 2/98 (2%) Query: 21 EQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAK 80 EQ G I+ L L +A++ E++ DVV++ SR+ + + G TLV + Sbjct: 57 EQAFIEGRIIS--LEKTLKKARLMEDEDIRTDVVSLGSRITLKEMKSGREVTVTLVSSVE 114 Query: 81 MTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATH 118 + ++S +PVG A++G +V ++ E P G + Sbjct: 115 SKLKDGKISDESPVGKAIMGKKVKSTVSVEAPAGTIKY 152 >UniRef50_C6WVB7 GreA/GreB family elongation factor n=2 Tax=Methylophilaceae RepID=C6WVB7_METML Length = 168 Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 2/94 (2%) Query: 34 LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93 + A LD A + P + H+ V + ++ + + G +V + S ++S ++P Sbjct: 76 VRARLDSAILVDPTKQSHETVLFGATIEVEDGA-GAQHTFHIVGEDEADASINKVSWVSP 134 Query: 94 VGAALLGLRVGDSIHWELPGGVATHLEVLELEYQ 127 + +LLG +VGD++ W+ P G +LE+L++ YQ Sbjct: 135 LAKSLLGQKVGDTVTWQRPAG-NINLEILDIHYQ 167 >UniRef50_C0QWD9 Transcription elongation factor n=2 Tax=Brachyspira RepID=C0QWD9_BRAHW Length = 154 Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 34 LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93 L ++L ++ P + D VT RVK ++ S V +V + S +++++ P Sbjct: 63 LESDLAGCEIIDPANLDKDTVTFGKRVKVKDKSRNAVFEYRIVGELEADMSKNEITIVTP 122 Query: 94 VGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 + LLG ++GD + ++P G LE+LE+ Sbjct: 123 IAKGLLGKKIGDVVTIKVPAGDKV-LEILEI 152 >UniRef50_D0J9T5 Transcription elongation factor n=55 Tax=Bacteria RepID=D0J9T5_BLASP Length = 162 Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 29/110 (26%), Positives = 56/110 (50%), Gaps = 1/110 (0%) Query: 17 DILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLV 76 D + E + + IA L +L A++ ++ V++ S V+ +NL+ G ++ TLV Sbjct: 52 DAIKEAQEFLEMNIA-KLKKKLSNARIIDGSQINRTRVSILSTVRVKNLTYGGEQIYTLV 110 Query: 77 YPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 + + ++S+ P+ LLG +VG H +LP + E+LE+ + Sbjct: 111 PEGEADLKSGKISINTPISTGLLGKQVGQIAHIKLPNKMILDYEILEIAF 160 >UniRef50_A5D4X0 Putative uncharacterized protein n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D4X0_PELTS Length = 150 Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 37/65 (56%) Query: 54 VTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPG 113 VT+ S V+ +NLS+ EV +V P +S ++PVG +LL +VGD + + PG Sbjct: 74 VTIGSEVEIQNLSEQEVYKYFIVNPFYSEVREGHISFLSPVGKSLLLKKVGDEVEVKAPG 133 Query: 114 GVATH 118 GV + Sbjct: 134 GVFRY 138 >UniRef50_Q97EB6 Transcription elongation factor greA n=6 Tax=Clostridiales RepID=GREA_CLOAB Length = 158 Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 44/81 (54%) Query: 38 LDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAA 97 L A + E+ +DVV++ S+V ++ E ++V A+ ++S +PVG+A Sbjct: 72 LKNANVIDESELKNDVVSVGSKVMVKDYQFDEEIEFSIVGSAEADPIENKISNESPVGSA 131 Query: 98 LLGLRVGDSIHWELPGGVATH 118 L+G +VGD I +P GV + Sbjct: 132 LIGKKVGDEIEVNVPDGVDKY 152 >UniRef50_Q4HT85 Transcription elongation factor n=1 Tax=Campylobacter upsaliensis RM3195 RepID=Q4HT85_CAMUP Length = 161 Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 1/91 (1%) Query: 38 LDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAA 97 L RAQ+ P H+ V S V +L + TLV + +S+ +P+ A Sbjct: 69 LSRAQVIDPASYEHESVKFGSSVLIMDLESEKESKYTLVGTCESDLEKGYISIASPLARA 128 Query: 98 LLGLRVGDSIHWELPGGVATHLEVLELEYQP 128 +LG + GD LP G + E+L + Y+P Sbjct: 129 MLGKKEGDEFKVRLPKG-ESEFEILSVTYEP 158 >UniRef50_P64276 Transcription elongation factor greA n=48 Tax=delta/epsilon subdivisions RepID=GREA_HELPJ Length = 164 Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 1/87 (1%) Query: 41 AQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLG 100 AQ+ P + H+ V+ S +K NL + + T+V + + +S +P+ +L+G Sbjct: 72 AQVIDPSALAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESDPAKGLISFGSPIAKSLIG 131 Query: 101 LRVGDSIHWELPGGVATHLEVLELEYQ 127 GD++ +LP G + E+L++ Y+ Sbjct: 132 KSKGDAVSIQLPNG-ESDFEILDIYYK 157 >UniRef50_C1ZBG3 Transcription elongation factor n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZBG3_PLALI Length = 160 Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 5/97 (5%) Query: 32 DALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAK---MTDSNTQL 88 ++L ++L + +P VV +RV +N DG++ V P + M+D L Sbjct: 63 NSLKSKLASCYIVDKSTLPKGVVAFGTRVTVKNTDDGDIEKYEFVGPGEEDYMSDVMKIL 122 Query: 89 SVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 + +P+ +ALLG +V D + ++P G + E+ E+E Sbjct: 123 TT-SPLASALLGKKVNDKVSIQVPRGTINY-EITEIE 157 >UniRef50_C0QKN0 Transcription elongation factor n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QKN0_DESAH Length = 175 Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 2/82 (2%) Query: 34 LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTD-SNTQLSVMA 92 L ++ A++ P + D V SRV NL GE V ++ + +D ++SV + Sbjct: 85 LGYKIASAKIIDPATVSKDCVRFASRVVIENLDSGE-EVEYMIVGQEESDIHKGKISVSS 143 Query: 93 PVGAALLGLRVGDSIHWELPGG 114 P+G ALLG + GD I + PGG Sbjct: 144 PLGMALLGKQPGDEIVIQAPGG 165 >UniRef50_Q3Z8E7 Transcription elongation factor greA n=2 Tax=Dehalococcoides RepID=GREA_DEHE1 Length = 156 Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 34/66 (51%) Query: 54 VTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPG 113 V M S VK R+ +GE TLV P ++ ++S +P+G A+ G+ I E+P Sbjct: 85 VNMGSTVKLRDPKNGECCTYTLVSPKEIEPLKGKISASSPIGKAVFNRNKGEQIEIEVPS 144 Query: 114 GVATHL 119 G ++ Sbjct: 145 GTLQYI 150 >UniRef50_D2R891 Transcription elongation factor GreA n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R891_9PLAN Length = 164 Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 37 ELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGA 96 +L +A + P MP D V+ + V +++ E TLV + + ++ + +P+G Sbjct: 69 KLSKASIIDPSTMPRDQVSFGTTVLVKDIDMDEEEEFTLVGAGEEDYNAGRILITSPLGQ 128 Query: 97 ALLGLRVGDSIHWELPGGVATHLEVLELEY 126 AL+G ++GD + P G + LE+L L++ Sbjct: 129 ALVGKKIGDVVDVPAPKG-SYQLEILTLKF 157 >UniRef50_Q04EK0 Transcription elongation factor greA n=4 Tax=Bacilli RepID=GREA_OENOB Length = 162 Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/84 (27%), Positives = 44/84 (52%) Query: 41 AQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLG 100 AQ+ +VVT+ ++ F+ + DG+ T+V A+ + ++S +P+G ALL Sbjct: 75 AQVIDASSASKNVVTLGKKISFKEVPDGDEETYTIVGSAESDPLSGKISNDSPMGKALLD 134 Query: 101 LRVGDSIHWELPGGVATHLEVLEL 124 + GD + LP + +E+L + Sbjct: 135 HKTGDKVEIPLPENHSVTVEILHV 158 >UniRef50_Q11G80 GreA/GreB family elongation factor n=1 Tax=Chelativorans sp. BNC1 RepID=Q11G80_MESSB Length = 176 Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 1/98 (1%) Query: 34 LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93 L +L+ A++ PE P DVVT+NSR+ FR + +G R + L + Sbjct: 35 LRHKLETARVTRPEVTPDDVVTLNSRISFR-VGNGMPETRIICRDRSRGPLGYFLPITTI 93 Query: 94 VGAALLGLRVGDSIHWELPGGVATHLEVLELEYQPEAA 131 G ALLGL G + L+V + YQPE A Sbjct: 94 RGLALLGLTEGQMTPVSRGRSLVEILQVTAIHYQPERA 131 >UniRef50_C4L6P4 GreA/GreB family elongation factor n=1 Tax=Exiguobacterium sp. AT1b RepID=C4L6P4_EXISA Length = 152 Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 3/92 (3%) Query: 34 LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93 LN LD A + E + +VVT +RV R + E +V A+ +SV +P Sbjct: 63 LNHLLDDATIV--ESVQSEVVTFGNRVVIREVQQEETERYRIVSEAEADLERGSISVTSP 120 Query: 94 VGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 +G L+G +G +I E PGG +EVL +E Sbjct: 121 LGRRLMGATMGQTIQVETPGG-TIQVEVLHIE 151 >UniRef50_Q30T56 Transcription elongation factor n=3 Tax=Campylobacterales RepID=Q30T56_SULDN Length = 174 Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 1/94 (1%) Query: 34 LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93 LNA + +A + P + H V+ S V+ +L + V T+ + N +S+ +P Sbjct: 64 LNAMIQKAHIIDPSTLLHTKVSFGSSVRILDLESDKEEVYTICGVLESEPENGLISIHSP 123 Query: 94 VGAALLGLRVGDSIHWELPGGVATHLEVLELEYQ 127 + +LG RV D +LP + E+LE+ Y+ Sbjct: 124 LAQVMLGKRVSDEFKIQLP-LMKKEYEILEIYYK 156 >UniRef50_A0M1N1 GreA-like transcription elongation factor n=3 Tax=Flavobacteriaceae RepID=A0M1N1_GRAFK Length = 166 Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 49/93 (52%), Gaps = 1/93 (1%) Query: 34 LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93 L+ L A++ ++ P D + +RVK N + G+++ +V + +++ +AP Sbjct: 75 LSERLQTARLLDSKDQPKDEIRFGARVKLTNETSGQLQEFQIVGVDEADIKKKKIAFVAP 134 Query: 94 VGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 + A+ G +VG+ I ++L G L+VL + Y Sbjct: 135 IAKAVTGRKVGEEIDFKL-GNEIRKLKVLGITY 166 >UniRef50_B9XEY1 GreA/GreB family elongation factor n=1 Tax=bacterium Ellin514 RepID=B9XEY1_9BACT Length = 170 Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 2/94 (2%) Query: 34 LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93 L L A++ P P + V + V R+ S E R R + D + +S ++P Sbjct: 79 LEQSLATAEIVPPPPQPWEQVRFGATVTVRDESGNETRYRIVGVDETDIDRD-WVSWLSP 137 Query: 94 VGAALLGLRVGDSIHWELPGGVATHLEVLELEYQ 127 + AL+ R+G+ +H+ P G LE++ + Y+ Sbjct: 138 IARALINARIGERVHFRFPAG-EKQLEIVSITYE 170 >UniRef50_Q2LR03 Transcription elongation factor greA n=1 Tax=Syntrophus aciditrophicus SB RepID=GREA_SYNAS Length = 161 Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 1/77 (1%) Query: 52 DVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWEL 111 D + + V S G+ LV P + S ++SV +P+G AL+G +GD + Sbjct: 83 DRIVFGATVIIEEASTGKQTNYQLVGPFESNISENKISVTSPIGKALIGKSIGDEVKVHT 142 Query: 112 PGGVATHLEVLELEYQP 128 PGG+ + EV+++ P Sbjct: 143 PGGI-RNFEVVDIYINP 158 >UniRef50_Q1H282 GreA/GreB family elongation factor n=2 Tax=Proteobacteria RepID=Q1H282_METFK Length = 165 Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 2/93 (2%) Query: 34 LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93 L A L+ A + P P D V + V+ + +G +V + + ++S ++P Sbjct: 75 LQARLESAIVVDPATQPTDTVLFGATVEVED-ENGNSHTFMIVGEDEADIATNRVSWVSP 133 Query: 94 VGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 + AL+G ++GDS+ W P G LE++ + Y Sbjct: 134 LAKALIGQKIGDSVTWHRPAG-NLELEIIAIHY 165 >UniRef50_C4XLU8 Transcription elongation factor greA n=11 Tax=Desulfovibrionales RepID=GREA_DESMR Length = 164 Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 52/101 (51%), Gaps = 2/101 (1%) Query: 34 LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93 + + + R + + + V + V+ ++ G+V+ TL+ P + S +S+++P Sbjct: 64 IESRMSRFNVIDLATLGGEQVIFGATVEIEDVDTGDVKKYTLLGPDEAEPSKGSISLLSP 123 Query: 94 VGAALLGLRVGDSIHWELPGGVATHLEVLELEYQ-PEAAGD 133 VG ALLG VGD I + P G + E++ + + P AA D Sbjct: 124 VGLALLGKFVGDEIVVDAPRG-KINYEIVSIAFHGPIAAAD 163 >UniRef50_Q1AU03 Transcription elongation factor n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AU03_RUBXD Length = 154 Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 2/93 (2%) Query: 34 LNAELDRAQMCSPEEMPHD-VVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMA 92 L L A++ P + V + +RV R + DG R +V + ++ +LS + Sbjct: 60 LQRRLRNAKIVDPASSAEEGAVDLGTRVTLRVVGDGRERTFQIVGANEADPASGKLSHAS 119 Query: 93 PVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 PVG ALL RVG+ + P G AT E++ +E Sbjct: 120 PVGKALLRRRVGEKVRVSTPRG-ATEYEIVSVE 151 >UniRef50_C9RKD0 Transcription elongation factor n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RKD0_FIBSS Length = 151 Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 2/92 (2%) Query: 34 LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93 L +L RAQ+ + + D + + + +NL V LV P + N ++S +P Sbjct: 62 LQDQLARAQVIAFD-ANSDTIKFGATITAKNLKTKREIVYQLVSPEEADALNGKISFKSP 120 Query: 94 VGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 +GAAL+G + GD++ P G E+++ + Sbjct: 121 IGAALMGKKRGDTVEVVTPKG-KNQFEIIDFK 151 >UniRef50_B1MX52 Transcription elongation factor greA n=11 Tax=Firmicutes RepID=GREA_LEUCK Length = 160 Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/92 (27%), Positives = 45/92 (48%) Query: 34 LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93 L ++ A++ P DVV++ V F+ L D E +V + ++S + Sbjct: 68 LKKMIENAEIIDPNATAADVVSLGKTVTFKELPDEEPETYAIVGSTESDPLAGKISNESA 127 Query: 94 VGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 + ALL +VGD + LP G + +E+L++E Sbjct: 128 MAVALLDKKVGDKVSVPLPSGESIDVEILKVE 159 >UniRef50_C8S319 GreA/GreB family elongation factor n=1 Tax=Rhodobacter sp. SW2 RepID=C8S319_9RHOB Length = 167 Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 5/113 (4%) Query: 14 ERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVR 73 ER+D L E A + L A L A P P V +RV+ L+DG +V Sbjct: 55 ERLDKLPEAAAERDI---RYLEARLRSAIPVDPSSQPAGEVAFGARVEV-ALADGSRQVW 110 Query: 74 TLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 + + + +++ +P+ ALLG VGD + W P G LEVL + Y Sbjct: 111 QITGEDEADATQNRIAPQSPLARALLGAEVGDLVIWRKPSG-PVELEVLAIAY 162 >UniRef50_B0P8A6 Transcription elongation factor n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P8A6_9FIRM Length = 151 Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 34 LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93 L +L ++ +++ DVV++ SRVK ++ E V T+ + + +S +P Sbjct: 60 LEDQLKHVKIIERDQISTDVVSVGSRVKILDMDYDEEMVYTIASSVESHNDLESISDESP 119 Query: 94 VGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 VG L+G +VGD + P V L++LE+ Sbjct: 120 VGKGLIGHKVGDVVEIHAPAAVLK-LKILEI 149 >UniRef50_B4RBL3 Transcription elongation factor GreA/GreB family n=1 Tax=Phenylobacterium zucineum HLK1 RepID=B4RBL3_PHEZH Length = 131 Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 3/93 (3%) Query: 34 LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93 L E++R + + +++ V +NS V +++L R+ +V P ++S+++P Sbjct: 40 LRREVERMAIRAYDDLR--FVRLNSTVTYKDLRTRRRRIVQVVQPEHAHQDENRVSILSP 97 Query: 94 VGAALLGLRVGDSIHW-ELPGGVATHLEVLELE 125 +GAAL+GL G W E G ++VL +E Sbjct: 98 IGAALIGLPEGSVFRWAERIDGATRAVKVLAVE 130 >UniRef50_Q8ZJH2 Transcription elongation factor greB n=165 Tax=Proteobacteria RepID=GREB_YERPE Length = 171 Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 2/95 (2%) Query: 34 LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93 L L+ ++ P+ V + V+ N + E R+ LV P + + +S+ +P Sbjct: 66 LAKRLEVLKIVDPDPRQEGKVFFGAWVRVENEQE-EQRIFRLVGPDEFDPAKKWISIDSP 124 Query: 94 VGAALLGLRVGDSIHWELPGGVATHLEVLELEYQP 128 V AL+G +V D + + P G AT+ +LE+ Y+P Sbjct: 125 VARALIGKQVDDEVTVQTPNGEATYW-ILEIRYRP 158 >UniRef50_D1CSU3 Transcription elongation factor (Fragment) n=1 Tax=Sinorhizobium fredii RepID=D1CSU3_RHIFR Length = 109 Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust. Identities = 37/91 (40%), Positives = 51/91 (56%), Gaps = 3/91 (3%) Query: 38 LDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEV-RVRTLVYPAKMTDSNTQLSVMAPVGA 96 L RA++CSP ++P DVVT+NSRV F DG V R LV N +SV + +G Sbjct: 1 LVRAEICSPRKVPDDVVTINSRVTF--CVDGGVPRTANLVRNESQDFPNYTVSVESLLGL 58 Query: 97 ALLGLRVGDSIHWELPGGVATHLEVLELEYQ 127 LLGLR G +I E G + V+ +++Q Sbjct: 59 GLLGLRAGRAIAVETEAGGLQKVNVIRIDFQ 89 >UniRef50_D0WJ76 Transcription elongation factor n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WJ76_9ACTN Length = 161 Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%) Query: 68 GEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 G RV T+V A+ S+ ++S +PVGAALLG + GD E P G ++++++E+ Sbjct: 103 GRERVFTIVGAAEADVSSGKISNESPVGAALLGGKKGDHFTAEGPTGRVIEMDIVKIEH 161 >UniRef50_D1PEW3 Transcription elongation factor n=1 Tax=Prevotella copri DSM 18205 RepID=D1PEW3_9BACT Length = 154 Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust. Identities = 20/78 (25%), Positives = 43/78 (55%) Query: 38 LDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAA 97 L+ A++ + D V + S++K NL++ T+V P + + ++S+ +P+ A Sbjct: 67 LENARVIDKSRLKSDTVGLLSKIKITNLANKCSMNYTIVNPHEADLHSGKISIKSPIAKA 126 Query: 98 LLGLRVGDSIHWELPGGV 115 LLG + G+ + ++P G+ Sbjct: 127 LLGKKAGEEVMVKVPAGL 144 >UniRef50_Q725M4 Transcription elongation factor greA n=4 Tax=Desulfovibrionaceae RepID=GREA_DESVH Length = 163 Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 1/75 (1%) Query: 52 DVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWEL 111 D V + VK +L GE + TL+ P + + +SV +PV A+LG GD I + Sbjct: 82 DKVMFGATVKIEDLESGEEKEYTLLGPDEADYAKGSISVQSPVARAMLGKEEGDEIVVDA 141 Query: 112 PGGVATHLEVLELEY 126 P G H E++ + + Sbjct: 142 PRG-KIHYEIVSIRF 155 >UniRef50_A6X2G5 GreA/GreB family elongation factor n=2 Tax=Ochrobactrum RepID=A6X2G5_OCHA4 Length = 156 Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 5/65 (7%) Query: 52 DVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGD-----S 106 DVV V+ NL DG+VR T+V + SN ++S +APV L G VGD + Sbjct: 86 DVVRFGMTVELENLDDGKVRRWTIVGEDEADPSNGKISHVAPVAILLFGKPVGDVVKINN 145 Query: 107 IHWEL 111 + WE+ Sbjct: 146 VEWEI 150 >UniRef50_Q01RT9 GreA/GreB family elongation factor n=2 Tax=Acidobacteria RepID=Q01RT9_SOLUE Length = 164 Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 1/91 (1%) Query: 34 LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93 L + L + M ++P D + S V ++ + LV + N ++S +P Sbjct: 59 LKSRLGQLAMIDFTKIPRDKAGLGSTVVVLDVKSDQEITYHLVTSEEADAPNGKVSTTSP 118 Query: 94 VGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 +G ALLG VGD + PGGV LE+L+L Sbjct: 119 IGRALLGKTVGDEVKVMSPGGVK-ELEILKL 148 >UniRef50_A7HDS3 Transcription elongation factor GreB n=3 Tax=Myxococcales RepID=A7HDS3_ANADF Length = 169 Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 2/95 (2%) Query: 34 LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93 L+ +D + P PH + V + +GE R LV P + + +SV AP Sbjct: 73 LSERMDALTVVDPRPHPHGRAFFGAWVTIED-DEGEARTFRLVGPDEFDVAAGLISVEAP 131 Query: 94 VGAALLGLRVGDSIHWELPGGVATHLEVLELEYQP 128 +G ALLG + GD++ + P G A L ++ + + P Sbjct: 132 LGRALLGKQEGDTVLFLRPAGEA-ELTIMAVRWSP 165 >UniRef50_C1CW74 Putative transcription elongation factor n=1 Tax=Deinococcus deserti VCD115 RepID=C1CW74_DEIDV Length = 162 Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 3/80 (3%) Query: 38 LDRAQMCSPEEMPHDVVTMNSRVKFRNLSDG---EVRVRTLVYPAKMTDSNTQLSVMAPV 94 L RA + E++P V + S V + G +V++ + V + MT+ TQ+S +PV Sbjct: 71 LARAVIVEEEDLPRGQVAVGSVVMLEDDKHGRQLQVQLVSAVEISAMTEGVTQVSDDSPV 130 Query: 95 GAALLGLRVGDSIHWELPGG 114 G AL+G R G++ EL G Sbjct: 131 GKALMGRREGETFDVELEAG 150 >UniRef50_D0LKY5 Transcription elongation factor n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LKY5_HALO1 Length = 169 Score = 40.4 bits (93), Expect = 0.015, Method: Compositional matrix adjust. Identities = 23/93 (24%), Positives = 47/93 (50%), Gaps = 1/93 (1%) Query: 36 AELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVG 95 A+L +++ P ++ + V + V ++ G+ T+V + N ++SV APV Sbjct: 68 AKLALSEVIDPTKLSGERVKFGATVTVEDIDTGDEATYTIVGEHEADIKNKRISVTAPVA 127 Query: 96 AALLGLRVGDSIHWELPGGVATHLEVLELEYQP 128 AL+G +GD + P G E++++++ P Sbjct: 128 RALIGKAIGDETQVQTPKGTRA-FEIVDVKWLP 159 >UniRef50_Q03RN4 Transcription elongation factor n=1 Tax=Lactobacillus brevis ATCC 367 RepID=Q03RN4_LACBA Length = 132 Score = 40.0 bits (92), Expect = 0.020, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%) Query: 38 LDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAA 97 L AQ+ ++ D +T+ +V F+ D E T+V A+ + ++S +P+ Sbjct: 47 LQYAQIIDNDDTDKDEITVGKKVTFQE-DDDEPEEYTIVGAAEADPMSGKISNDSPIAKG 105 Query: 98 LLGLRVGDSIHWELPGGVAT 117 LLG RVG+++ + PGG T Sbjct: 106 LLGHRVGETVTFPTPGGDMT 125 >UniRef50_D1CDC6 Transcription elongation factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CDC6_THET1 Length = 159 Score = 40.0 bits (92), Expect = 0.021, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 6/91 (6%) Query: 38 LDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPA---KMTDSNTQLSVMAPV 94 L A++ P V + S+V +G T+V A + D ++S + V Sbjct: 72 LANAEVIDRSAQPAGTVGLGSKVTVEE--NGRTYTYTIVDGAEAGRGRDGEVRISSKSAV 129 Query: 95 GAALLGLRVGDSIHWELPGGVATHLEVLELE 125 G+ALLG RVGDS+ E+P G T ++L +E Sbjct: 130 GSALLGRRVGDSVEVEVPAGKLT-FKILSVE 159 >UniRef50_UPI0001C37CEA transcription elongation factor GreA n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37CEA Length = 156 Score = 40.0 bits (92), Expect = 0.022, Method: Compositional matrix adjust. Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 1/87 (1%) Query: 38 LDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAA 97 +D A++ + D + M+S++ + L G++ T+V ++S +P+G A Sbjct: 69 IDNAEIVDDSNISVDEIGMSSKITIKRLDTGKIETFTIVSTNHANVREGKISDASPIGKA 128 Query: 98 LLGLRVGDSIHWELPGGVATHLEVLEL 124 + RVGD + P G EV+E+ Sbjct: 129 AMKKRVGDVFIVDAPAG-ELKFEVVEI 154 >UniRef50_B2V1C0 Transcription elongation factor n=28 Tax=Clostridium RepID=B2V1C0_CLOBA Length = 155 Score = 40.0 bits (92), Expect = 0.022, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 1/86 (1%) Query: 41 AQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLG 100 A + E+ + +NS+ + + + D + V TLV + N +S+ + +G AL+G Sbjct: 71 ATVIDDTEIDKSSLGINSKARIKFVEDDDEDVITLVTTMDLDPENMLISIESDLGKALMG 130 Query: 101 LRVGDSIHWELPGGVATHLEVLELEY 126 + G+++ E PG T +++LE+ Y Sbjct: 131 KKAGETVEVEAPGAKYT-VKILEILY 155 >UniRef50_A0LK20 Transcription elongation factor greA n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=GREA_SYNFM Length = 156 Score = 40.0 bits (92), Expect = 0.024, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 1/91 (1%) Query: 34 LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93 L ++ ++ P + + S V + GEV LV P + + +SV++P Sbjct: 65 LCQKMGECEIVEPSDNDNGRAIFGSTVVVEDTETGEVTSYRLVGPYEADVQSGTISVVSP 124 Query: 94 VGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 +G AL+G G+ I + P GV ++EVLE+ Sbjct: 125 LGKALIGKEEGEEIRVQTPKGV-RNIEVLEI 154 >UniRef50_UPI0001C3129D transcription elongation factor GreA n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C3129D Length = 161 Score = 39.7 bits (91), Expect = 0.026, Method: Compositional matrix adjust. Identities = 24/92 (26%), Positives = 45/92 (48%) Query: 34 LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93 L +L A + + DVV + S V+ + G+ +V A+ + +LS +P Sbjct: 66 LEEKLRAATVIDSRSVGTDVVGIGSSVQVADSQSGKSDTYVIVGSAEANPAERKLSNESP 125 Query: 94 VGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 VG AL+G + G++ +LP G L + +++ Sbjct: 126 VGKALIGRKAGETATVQLPNGKQRELRITKID 157 >UniRef50_Q817Z6 Transcription elongation factor greA n=141 Tax=cellular organisms RepID=GREA_BACCR Length = 158 Score = 39.3 bits (90), Expect = 0.034, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 35/62 (56%) Query: 53 VVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELP 112 VVT+ V F+ L +G+ T+V A+ ++S +P+ +LLG ++G+ + + P Sbjct: 87 VVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDSPIAKSLLGKQIGEKVTIQTP 146 Query: 113 GG 114 GG Sbjct: 147 GG 148 >UniRef50_Q2Z001 Transcription elongation factor n=1 Tax=uncultured candidate division OP8 bacterium RepID=Q2Z001_9BACT Length = 156 Score = 38.9 bits (89), Expect = 0.047, Method: Compositional matrix adjust. Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 1/93 (1%) Query: 34 LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93 L + A + P ++ + V +RV +NL GE V LV + +S+ +P Sbjct: 65 LQGRISHAAVIDPSKLSGNRVVFGARVFLKNLDTGEPIVYRLVGEDEADIEQGSISITSP 124 Query: 94 VGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 + L+ VG+ +P G+ + E++++E+ Sbjct: 125 LARGLIRREVGEQAKIAVPSGIKS-FEIVKIEF 156 >UniRef50_A0AIU5 Transcription elongation factor greA n=99 Tax=Bacteria RepID=GREA_LISW6 Length = 160 Score = 38.9 bits (89), Expect = 0.047, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 37/74 (50%) Query: 41 AQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLG 100 AQ+ E + +VT+ + V F L DGE T+V A+ ++S +P+ LLG Sbjct: 75 AQIIDAAEAHNGLVTLGNTVTFIELPDGEEETYTIVGSAEADPFEGKISNDSPIAKGLLG 134 Query: 101 LRVGDSIHWELPGG 114 + G+ + + P G Sbjct: 135 HKEGEEVTIQTPAG 148 >UniRef50_A5V3E1 Transcription elongation factor greA n=13 Tax=Proteobacteria RepID=GREA_SPHWW Length = 158 Score = 38.9 bits (89), Expect = 0.053, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 5/98 (5%) Query: 30 IADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNT-QL 88 IAD + L RAQ+ P + D + + V L D E VR + D+ T ++ Sbjct: 64 IAD-IEDRLSRAQVIDPSMLSGDKIVFGATVTL--LDDDEKPVRYQIVGQTEADAKTGKI 120 Query: 89 SVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 S +P+G AL+G +V D + +P G +L V ++E+ Sbjct: 121 SYNSPLGRALIGKKVDDEVEVTVPSGDRFYL-VSKIEF 157 >UniRef50_Q0BR49 Transcription elongation factor greB n=4 Tax=cellular organisms RepID=Q0BR49_GRABC Length = 169 Score = 38.9 bits (89), Expect = 0.056, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 5/99 (5%) Query: 34 LNAELDRAQMCSPEEMPH-DVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMA 92 L L+ A + P PH D + + V + N +D V+V T+V + + ++S+++ Sbjct: 74 LTKRLENAVVIDPATQPHKDRIYFGATVTYINAADETVQV-TIVGADEADMALGRISLLS 132 Query: 93 PVGAALLGLRVGDSIHWELPGGVATH-LEVLELEYQPEA 130 PV ALLG GD + P V T L++L+++Y+P A Sbjct: 133 PVAKALLGASKGDEVTVITP--VKTEILDILDVDYRPLA 169 >UniRef50_Q67JL1 Transcription elongation factor n=2 Tax=Clostridiales RepID=Q67JL1_SYMTH Length = 157 Score = 38.5 bits (88), Expect = 0.062, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 37/68 (54%) Query: 51 HDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWE 110 +VV + S V R+L G+ T+V + ++ ++S +PVG A++G RVG + + Sbjct: 84 QEVVVLGSTVVLRDLEYGDEHTYTIVGTTEADPAHNRISNESPVGRAIMGQRVGTVVAVD 143 Query: 111 LPGGVATH 118 P GV + Sbjct: 144 APDGVFKY 151 >UniRef50_A9WK05 Transcription elongation factor greA n=6 Tax=Chloroflexi (class) RepID=GREA_CHLAA Length = 157 Score = 38.5 bits (88), Expect = 0.062, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 38/78 (48%) Query: 38 LDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAA 97 L RA++ ++ + V + S V R DG T+V A+ ++S +P+GAA Sbjct: 71 LSRAEVIDEDQASNGEVRVGSSVTVRFEDDGTEETWTIVGSAEANPRQGRISNESPLGAA 130 Query: 98 LLGLRVGDSIHWELPGGV 115 LLG R + + P GV Sbjct: 131 LLGKRARNKVTVHTPSGV 148 >UniRef50_C1F9R4 Transcription elongation factor GreA n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F9R4_ACIC5 Length = 165 Score = 38.5 bits (88), Expect = 0.063, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 1/76 (1%) Query: 49 MPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIH 108 +PHD V S V+ + S E LV + S +S +P+G AL+G +VGD+ Sbjct: 75 IPHDRVAFGSTVEVFDTSKDEKIEYKLVTSEESDVSKGLISTTSPIGRALIGKQVGDTAT 134 Query: 109 WELPGGVATHLEVLEL 124 P G LEVL+L Sbjct: 135 VVTPSG-NRELEVLKL 149 >UniRef50_B2S1W7 Transcription elongation factor greA n=6 Tax=Treponema RepID=GREA_TREPS Length = 162 Score = 38.5 bits (88), Expect = 0.068, Method: Compositional matrix adjust. Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 4/91 (4%) Query: 34 LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93 L E++RAQ+ P + V+ + + +N + GE T++ P + +S M+P Sbjct: 68 LQEEIERAQVFDPTTVVAGRVSFGTVISLKNHTSGEDETYTILGPWESAPERGIISYMSP 127 Query: 94 VGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 +G+ LL + G+ + + V H +V E+ Sbjct: 128 LGSNLLNRKTGEQLAFT----VGEHEKVYEI 154 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0AFW6 Regulator of nucleoside diphosphate kinase n=155... 193 1e-48 UniRef50_C5S652 GreA/GreB family elongation factor n=2 Tax=Prote... 190 1e-47 UniRef50_Q2LTP9 Transcription elongation factor n=2 Tax=Deltapro... 190 2e-47 UniRef50_Q3BX42 Regulator of nucleoside diphosphate kinase n=9 T... 183 2e-45 UniRef50_A6VVR5 GreA/GreB family elongation factor n=15 Tax=Prot... 179 3e-44 UniRef50_Q6MQZ8 Regulator of nucleoside diphosphate kinase n=1 T... 177 8e-44 UniRef50_B5EI69 GreA/GreB family elongation factor n=6 Tax=Desul... 173 1e-42 UniRef50_B8GS58 GreA/GreB family elongation factor n=22 Tax=Prot... 172 3e-42 UniRef50_A0LL17 GreA/GreB family elongation factor n=3 Tax=Bacte... 170 1e-41 UniRef50_Q1H3Z9 GreA/GreB family elongation factor n=1 Tax=Methy... 168 4e-41 UniRef50_Q7MD62 Transcription elongation factor n=10 Tax=Proteob... 166 2e-40 UniRef50_A4XNX9 GreA/GreB family elongation factor n=16 Tax=Bact... 165 5e-40 UniRef50_B5JTX6 Transcription elongation factor n=1 Tax=gamma pr... 163 2e-39 UniRef50_B9MBQ3 GreA/GreB family elongation factor n=6 Tax=Betap... 162 4e-39 UniRef50_Q3K4S3 Regulator of nucleoside diphosphate kinase n=2 T... 161 5e-39 UniRef50_C6RP41 GreA/GreB family elongation factor n=4 Tax=Acine... 161 5e-39 UniRef50_Q3SMM4 GreA/GreB family elongation factor n=1 Tax=Thiob... 159 3e-38 UniRef50_B8G0E1 GreA/GreB family elongation factor n=2 Tax=Desul... 158 3e-38 UniRef50_B0SEQ9 Transcription elongation factor n=2 Tax=Leptospi... 157 9e-38 UniRef50_C9P6Y2 Regulator of nucleoside diphosphate kinase n=1 T... 156 2e-37 UniRef50_B9NGJ6 Predicted protein n=12 Tax=cellular organisms Re... 155 4e-37 UniRef50_B2SQJ5 Regulator of nucleoside diphosphate kinase n=8 T... 155 4e-37 UniRef50_A9GAI2 Regulator of nucleoside diphosphate kinase n=1 T... 155 6e-37 UniRef50_A5F052 Regulator of nucleoside diphosphate kinase n=31 ... 154 1e-36 UniRef50_A9MBQ4 GreA/GreB family elongation factor n=36 Tax=Bruc... 153 2e-36 UniRef50_Q11P04 Transcription elongation factor n=1 Tax=Cytophag... 152 3e-36 UniRef50_Q4KB20 Acetyltransferase, GNAT family family n=9 Tax=Ba... 152 3e-36 UniRef50_A6C278 Nucleoside diphosphate kinase regulator protein,... 152 3e-36 UniRef50_Q74EX3 Nucleoside diphosphate kinase regulator protein,... 151 4e-36 UniRef50_Q13WN5 GreA/GreB family elongation factor n=50 Tax=Burk... 151 5e-36 UniRef50_C0N448 Putative uncharacterized protein n=1 Tax=Methylo... 150 1e-35 UniRef50_C3X2V3 GreA/GreB family elongation factor n=2 Tax=Oxalo... 149 2e-35 UniRef50_A6X582 GreA/GreB family elongation factor n=3 Tax=Rhizo... 149 3e-35 UniRef50_C6X5Q8 Transcription elongation factor n=1 Tax=Flavobac... 146 3e-34 UniRef50_B3PF63 Regulator of nucleoside diphosphate kinase n=1 T... 145 4e-34 UniRef50_A6GQE5 Nucleoside diphosphate kinase regulator n=1 Tax=... 145 5e-34 UniRef50_B8IFL5 GreA/GreB family elongation factor n=8 Tax=Methy... 143 2e-33 UniRef50_D1SYS0 GreA/GreB family elongation factor n=1 Tax=Acido... 142 4e-33 UniRef50_A1TUC9 GreA/GreB family elongation factor n=4 Tax=Burkh... 141 7e-33 UniRef50_Q5P744 Transcription elongation factor n=3 Tax=Proteoba... 141 7e-33 UniRef50_A5V983 GreA/GreB family elongation factor n=1 Tax=Sphin... 140 1e-32 UniRef50_A5VGM9 GreA/GreB family elongation factor n=1 Tax=Sphin... 139 2e-32 UniRef50_A1U1V6 GreA/GreB family elongation factor n=2 Tax=Marin... 138 4e-32 UniRef50_Q3SU57 GreA/GreB family elongation factor n=9 Tax=Brady... 138 6e-32 UniRef50_C6WYK0 GreA/GreB family elongation factor n=2 Tax=Methy... 136 2e-31 UniRef50_B0T7C4 GreA/GreB family elongation factor n=1 Tax=Caulo... 135 3e-31 UniRef50_A7IJH2 GreA/GreB family elongation factor n=4 Tax=Rhizo... 133 1e-30 UniRef50_A7HFE1 GreA/GreB family elongation factor n=1 Tax=Anaer... 133 2e-30 UniRef50_A8LN19 GreA/GreB family elongation factor n=8 Tax=Alpha... 132 3e-30 UniRef50_A9EFF1 GreA/GreB family elongation factor n=1 Tax=Ocean... 131 7e-30 UniRef50_Q98F06 Nucleoside diphosphate kinase regulator n=2 Tax=... 130 1e-29 UniRef50_A7HAZ2 GreA/GreB family elongation factor n=5 Tax=Myxoc... 130 1e-29 UniRef50_Q0BZP7 Regulatory protein n=1 Tax=Hyphomonas neptunium ... 130 1e-29 UniRef50_B7L307 GreA/GreB family elongation factor n=1 Tax=Methy... 129 2e-29 UniRef50_B0T793 GreA/GreB family elongation factor n=1 Tax=Caulo... 129 2e-29 UniRef50_C6VSR5 GreA/GreB family elongation factor n=2 Tax=Sphin... 127 9e-29 UniRef50_A4BB58 Nucleoside diphosphate kinase regulator n=1 Tax=... 126 2e-28 UniRef50_Q2GA51 GreA/GreB family elongation factor n=1 Tax=Novos... 125 4e-28 UniRef50_Q5QX12 Transcription elongation factor family protein n... 124 8e-28 UniRef50_B4RF21 Transcription elongation factor n=2 Tax=cellular... 123 1e-27 UniRef50_Q15Z69 GreA/GreB family elongation factor n=1 Tax=Pseud... 123 2e-27 UniRef50_C6XWY5 Transcription elongation factor GreA/GreB domain... 122 3e-27 UniRef50_Q98F07 Nucleoside diphosphate kinase regulator; Rnk n=2... 122 4e-27 UniRef50_C0A6F4 GreA/GreB family elongation factor n=1 Tax=Opitu... 121 7e-27 UniRef50_B4W8F1 Putative uncharacterized protein n=1 Tax=Brevund... 119 3e-26 UniRef50_Q930S2 Putative uncharacterized protein n=1 Tax=Sinorhi... 119 4e-26 UniRef50_B1ZU20 GreA/GreB family elongation factor n=1 Tax=Opitu... 118 5e-26 UniRef50_A6EIL5 Nucleoside diphosphate kinase regulator protein,... 117 1e-25 UniRef50_A3PS97 GreA/GreB family elongation factor n=4 Tax=Rhodo... 117 1e-25 UniRef50_A4CMB9 Nucleoside diphosphate kinase regulator n=1 Tax=... 114 6e-25 UniRef50_C7CFG6 Putative regulator n=1 Tax=Methylobacterium exto... 113 1e-24 UniRef50_A7HXN2 GreA/GreB family elongation factor n=1 Tax=Parvi... 113 1e-24 UniRef50_A5FHU8 GreA/GreB family elongation factor n=1 Tax=Flavo... 113 2e-24 UniRef50_B8IHN9 GreA/GreB family elongation factor n=1 Tax=Methy... 112 3e-24 UniRef50_Q11G80 GreA/GreB family elongation factor n=1 Tax=Chela... 107 9e-23 UniRef50_C0QKN0 Transcription elongation factor n=1 Tax=Desulfob... 107 1e-22 UniRef50_A6EMP4 Transcription elongation factor n=4 Tax=Bacteroi... 106 2e-22 UniRef50_B4RBL2 Transcription elongation factor n=1 Tax=Phenylob... 105 4e-22 UniRef50_A0LZA7 Transcription elongation factor n=1 Tax=Gramella... 105 4e-22 UniRef50_B1ZD84 GreA/GreB family elongation factor n=4 Tax=Methy... 104 6e-22 UniRef50_A6LPL4 Transcription elongation factor greA n=30 Tax=Cl... 104 9e-22 UniRef50_UPI00016C498C transcription elongation factor greA n=1 ... 104 9e-22 UniRef50_P64276 Transcription elongation factor greA n=48 Tax=de... 104 1e-21 UniRef50_Q4HT85 Transcription elongation factor n=1 Tax=Campylob... 104 1e-21 UniRef50_D0J9T5 Transcription elongation factor n=55 Tax=Bacteri... 103 2e-21 UniRef50_A5FRA2 Transcription elongation factor n=3 Tax=Dehaloco... 102 3e-21 UniRef50_Q13CU9 Putative uncharacterized protein n=1 Tax=Rhodops... 102 3e-21 UniRef50_D2R891 Transcription elongation factor GreA n=1 Tax=Pir... 102 4e-21 UniRef50_Q97EB6 Transcription elongation factor greA n=6 Tax=Clo... 101 8e-21 UniRef50_A5FHJ3 GreA/GreB family elongation factor n=3 Tax=Flavo... 100 2e-20 UniRef50_A7HXN3 GreA/GreB family elongation factor n=1 Tax=Parvi... 99 3e-20 UniRef50_Q04EK0 Transcription elongation factor greA n=4 Tax=Bac... 99 4e-20 UniRef50_Q3Z8E7 Transcription elongation factor greA n=2 Tax=Deh... 96 2e-19 UniRef50_C0QWD9 Transcription elongation factor n=2 Tax=Brachysp... 95 7e-19 UniRef50_Q30T56 Transcription elongation factor n=3 Tax=Campylob... 95 1e-18 UniRef50_Q3ATA7 Transcription elongation factor greA n=13 Tax=Ba... 94 1e-18 UniRef50_C1ZBG3 Transcription elongation factor n=1 Tax=Planctom... 91 7e-18 UniRef50_C6WVB7 GreA/GreB family elongation factor n=2 Tax=Methy... 91 1e-17 UniRef50_Q0B0N4 Transcription elongation factor greA n=6 Tax=Clo... 91 1e-17 UniRef50_C6XVH8 Transcription elongation factor n=1 Tax=Pedobact... 89 4e-17 UniRef50_C4L6P4 GreA/GreB family elongation factor n=1 Tax=Exigu... 86 2e-16 UniRef50_B9KZF4 Transcription elongation factor greA n=2 Tax=The... 84 1e-15 UniRef50_C0QME5 GreA2 n=1 Tax=Desulfobacterium autotrophicum HRM... 82 6e-15 UniRef50_A5D4X0 Putative uncharacterized protein n=1 Tax=Pelotom... 79 6e-14 Sequences not found previously or not previously below threshold: UniRef50_A8HR94 Transcription elongation factor greA n=5 Tax=Pro... 97 1e-19 UniRef50_Q1H282 GreA/GreB family elongation factor n=2 Tax=Prote... 97 1e-19 UniRef50_A3ESJ0 Transcription elongation factor n=4 Tax=Bacteria... 97 2e-19 UniRef50_Q7UVA0 Transcription elongation factor greA n=3 Tax=Pla... 97 2e-19 UniRef50_D1B632 Transcription elongation factor n=4 Tax=Synergis... 96 4e-19 UniRef50_B1MX52 Transcription elongation factor greA n=11 Tax=Fi... 96 4e-19 UniRef50_UPI0001C3129D transcription elongation factor GreA n=1 ... 95 5e-19 UniRef50_B3E3H5 Transcription elongation factor greA n=19 Tax=Pr... 95 9e-19 UniRef50_A0AIU5 Transcription elongation factor greA n=99 Tax=Ba... 93 2e-18 UniRef50_B2S6W5 Transcription elongation factor greA n=39 Tax=Ba... 93 2e-18 UniRef50_B9KH08 Transcription elongation factor n=9 Tax=Ricketts... 93 3e-18 UniRef50_D0LKY5 Transcription elongation factor n=1 Tax=Haliangi... 92 4e-18 UniRef50_A9WK05 Transcription elongation factor greA n=6 Tax=Chl... 92 5e-18 UniRef50_C9KJ19 Transcription elongation factor n=1 Tax=Mitsuoke... 92 6e-18 UniRef50_Q2LR03 Transcription elongation factor greA n=1 Tax=Syn... 91 1e-17 UniRef50_Q817Z6 Transcription elongation factor greA n=141 Tax=c... 90 1e-17 UniRef50_Q057J4 Transcription elongation factor greA n=20 Tax=Pr... 90 2e-17 UniRef50_A8F083 Transcription elongation factor greA n=13 Tax=Ri... 90 2e-17 UniRef50_C9RKD0 Transcription elongation factor n=1 Tax=Fibrobac... 90 3e-17 UniRef50_Q0A765 Transcription elongation factor greA n=23 Tax=Pr... 89 4e-17 UniRef50_Q725M4 Transcription elongation factor greA n=4 Tax=Des... 88 8e-17 UniRef50_Q67JL1 Transcription elongation factor n=2 Tax=Clostrid... 88 8e-17 UniRef50_D1PEW3 Transcription elongation factor n=1 Tax=Prevotel... 88 9e-17 UniRef50_A0LK20 Transcription elongation factor greA n=1 Tax=Syn... 88 1e-16 UniRef50_Q1LSK1 Transcription elongation factor greA n=16 Tax=Pr... 87 2e-16 UniRef50_C9RNS9 GreA/GreB family elongation factor n=1 Tax=Fibro... 87 2e-16 UniRef50_C7PP41 Transcription elongation factor n=1 Tax=Chitinop... 87 2e-16 UniRef50_A8SDG2 Transcription elongation factor n=2 Tax=Clostrid... 86 4e-16 UniRef50_Q01RT9 GreA/GreB family elongation factor n=2 Tax=Acido... 85 5e-16 UniRef50_C4XLU8 Transcription elongation factor greA n=11 Tax=De... 85 5e-16 UniRef50_C7GYY1 Transcription elongation factor n=1 Tax=Eubacter... 85 1e-15 UniRef50_UPI0001C37CEA transcription elongation factor GreA n=1 ... 84 1e-15 UniRef50_C0JZV3 Transcription elongation factor GreA n=1 Tax=unc... 84 1e-15 UniRef50_B4RBL3 Transcription elongation factor GreA/GreB family... 84 1e-15 UniRef50_Q2Z001 Transcription elongation factor n=1 Tax=uncultur... 84 2e-15 UniRef50_Q04HS9 Transcription elongation factor greA n=90 Tax=Ba... 84 2e-15 UniRef50_A3HZU2 Transcription elongation factor GreB n=2 Tax=Bac... 83 2e-15 UniRef50_A0M1N1 GreA-like transcription elongation factor n=3 Ta... 83 3e-15 UniRef50_Q1H0G6 GreA/GreB family elongation factor n=3 Tax=Prote... 83 3e-15 UniRef50_Q8ZJH2 Transcription elongation factor greB n=165 Tax=P... 83 3e-15 UniRef50_Q5SKM1 Transcription elongation factor n=5 Tax=Thermus ... 83 3e-15 UniRef50_A9BFC0 Transcription elongation factor greA n=12 Tax=Th... 83 3e-15 UniRef50_B0P8A6 Transcription elongation factor n=1 Tax=Anaerotr... 83 4e-15 UniRef50_D1B0C0 Transcription elongation factor n=4 Tax=Campylob... 83 4e-15 UniRef50_B9XEY1 GreA/GreB family elongation factor n=1 Tax=bacte... 82 4e-15 UniRef50_C1XQ58 Transcription elongation factor n=2 Tax=Meiother... 82 4e-15 UniRef50_A6H247 Transcription elongation factor greA n=33 Tax=Ba... 82 5e-15 UniRef50_C1F9R4 Transcription elongation factor GreA n=1 Tax=Aci... 82 5e-15 UniRef50_Q2S2N3 Transcription elongation factor n=1 Tax=Saliniba... 82 5e-15 UniRef50_A5V3E1 Transcription elongation factor greA n=13 Tax=Pr... 82 6e-15 UniRef50_A7HDS3 Transcription elongation factor GreB n=3 Tax=Myx... 82 7e-15 UniRef50_C8S319 GreA/GreB family elongation factor n=1 Tax=Rhodo... 81 7e-15 UniRef50_Q03RN4 Transcription elongation factor n=1 Tax=Lactobac... 81 1e-14 UniRef50_B4UCU9 Transcription elongation factor greA n=588 Tax=B... 81 1e-14 UniRef50_Q1AU03 Transcription elongation factor n=1 Tax=Rubrobac... 80 2e-14 UniRef50_D2RL35 GreA/GreB family elongation factor n=3 Tax=Veill... 80 2e-14 UniRef50_Q0BR49 Transcription elongation factor greB n=4 Tax=cel... 80 2e-14 UniRef50_A6SZ83 Transcription elongation factor, greA family n=2... 80 2e-14 UniRef50_Q1PYP5 Transcription elongation factor n=1 Tax=Candidat... 80 2e-14 UniRef50_B1I1G7 GreA/GreB family elongation factor n=1 Tax=Candi... 80 3e-14 UniRef50_Q1J0L4 Transcription elongation factor n=3 Tax=Deinococ... 80 3e-14 UniRef50_Q2GD99 Transcription elongation factor greA n=2 Tax=Neo... 79 3e-14 UniRef50_Q848L1 GreA n=1 Tax=uncultured bacterium RepID=Q848L1_9... 79 4e-14 UniRef50_Q096W9 Transcription elongation factor GreB n=1 Tax=Sti... 79 5e-14 UniRef50_B5Y9H5 Transcription elongation factor n=1 Tax=Coprothe... 79 5e-14 UniRef50_Q4K5S3 Transcription elongation factor GreB n=3 Tax=Pse... 78 8e-14 UniRef50_C7N7T1 Transcription elongation factor n=1 Tax=Slackia ... 78 8e-14 UniRef50_Q88DU7 Transcription elongation factor greA n=83 Tax=Pr... 78 1e-13 UniRef50_B2V1C0 Transcription elongation factor n=28 Tax=Clostri... 77 1e-13 UniRef50_B1H062 Transcription elongation factor n=1 Tax=uncultur... 77 2e-13 UniRef50_D0WJ76 Transcription elongation factor n=1 Tax=Slackia ... 77 2e-13 UniRef50_Q1CX76 Transcription elongation factor, GreA/GreB famil... 77 2e-13 UniRef50_B2KBD2 GreA/GreB family elongation factor n=1 Tax=Elusi... 77 2e-13 UniRef50_Q4A759 Transcription elongation factor greA n=4 Tax=Myc... 77 2e-13 UniRef50_B9L0L0 Transcription elongation factor greA n=1 Tax=The... 76 3e-13 UniRef50_C4Z9L9 Transcription elongation factor n=3 Tax=Firmicut... 76 4e-13 UniRef50_A2RGA4 Transcription elongation factor greA n=111 Tax=F... 76 4e-13 UniRef50_Q5SJG6 Anti-cleavage anti-GreA transcription factor Gfh... 76 4e-13 UniRef50_B2S1W7 Transcription elongation factor greA n=6 Tax=Tre... 76 5e-13 UniRef50_D1C6T4 Transcription elongation factor n=1 Tax=Sphaerob... 76 5e-13 UniRef50_C6X3W9 Transcription elongation factor GreB n=1 Tax=Fla... 76 5e-13 UniRef50_D1CDC6 Transcription elongation factor n=1 Tax=Thermoba... 75 6e-13 UniRef50_D0J5N8 Kelongation factor GreB n=4 Tax=Proteobacteria R... 75 6e-13 UniRef50_D2QK34 GreA/GreB family elongation factor n=1 Tax=Spiro... 75 6e-13 UniRef50_A6NPJ1 Putative uncharacterized protein n=1 Tax=Bactero... 75 7e-13 UniRef50_B4UMG4 GreA/GreB family elongation factor n=4 Tax=Anaer... 75 8e-13 UniRef50_Q9HZY5 Transcription elongation factor greB n=13 Tax=Ga... 75 9e-13 UniRef50_Q88Q22 Transcription elongation factor, putative n=11 T... 75 9e-13 UniRef50_UPI0001746B72 nucleoside diphosphate kinase regulator p... 73 2e-12 UniRef50_A6NZ08 Transcription elongation factor n=1 Tax=Bacteroi... 73 2e-12 UniRef50_B5ZLJ0 Transcription elongation factor GreB n=5 Tax=Pro... 73 2e-12 UniRef50_Q98Q16 Transcription elongation factor greA n=3 Tax=Myc... 73 3e-12 UniRef50_B9XT30 GreA/GreB family elongation factor n=1 Tax=bacte... 73 3e-12 UniRef50_A4E9C2 Transcription elongation factor n=1 Tax=Collinse... 73 4e-12 UniRef50_Q8P7P8 Transcription elongation factor greB n=53 Tax=Pr... 72 5e-12 UniRef50_A6W1U9 Transcription elongation factor GreB n=17 Tax=Ga... 72 5e-12 UniRef50_Q2Y7V5 GreA/GreB family elongation factor n=33 Tax=cell... 72 5e-12 UniRef50_A0LES5 GreA/GreB family elongation factor n=1 Tax=Syntr... 72 6e-12 UniRef50_A6X2G5 GreA/GreB family elongation factor n=2 Tax=Ochro... 71 7e-12 UniRef50_Q1QUF3 GreA/GreB family elongation factor n=1 Tax=Chrom... 71 8e-12 UniRef50_B3DVF3 Transcription elongation factor GreA fused to un... 71 9e-12 UniRef50_B4D5K0 GreA/GreB family elongation factor n=1 Tax=Chtho... 71 9e-12 UniRef50_A5CVW9 Transcription elongation factor greA n=4 Tax=Gam... 71 1e-11 UniRef50_A5VME9 Transcription elongation factor GreA n=49 Tax=La... 71 1e-11 UniRef50_B9E669 Transcription elongation factor n=5 Tax=Clostrid... 70 2e-11 UniRef50_C6B1R3 GreA/GreB family elongation factor n=16 Tax=cell... 70 2e-11 UniRef50_Q930S1 Putative uncharacterized protein n=1 Tax=Sinorhi... 70 2e-11 UniRef50_Q7VM42 Transcription elongation factor greB n=27 Tax=Pr... 70 2e-11 UniRef50_C8W826 Transcription elongation factor n=7 Tax=Coriobac... 70 2e-11 UniRef50_A5IYH4 Transcription elongation factor greA n=3 Tax=Myc... 70 2e-11 UniRef50_O51157 Transcription elongation factor greA n=23 Tax=Bo... 70 3e-11 UniRef50_C5BTE2 Transcription elongation factor GreA n=1 Tax=Ter... 70 3e-11 UniRef50_Q04UP0 Transcription elongation factor n=6 Tax=Leptospi... 70 3e-11 UniRef50_B1XUH7 Transcription elongation factor GreB n=2 Tax=Pol... 70 3e-11 UniRef50_Q88ZS9 Transcription elongation factor greA 1 n=7 Tax=L... 69 4e-11 UniRef50_UPI0001C31C12 transcription elongation factor GreA n=1 ... 69 4e-11 UniRef50_UPI00017427C8 transcription elongation factor GreA n=1 ... 69 5e-11 UniRef50_B9KMW2 Transcription elongation factor n=3 Tax=Rhodobac... 69 5e-11 UniRef50_A7VBG3 Putative uncharacterized protein n=1 Tax=Clostri... 69 5e-11 UniRef50_B9J7D6 Transcription elongation factor protein n=52 Tax... 68 7e-11 UniRef50_B1ZZX3 GreA/GreB family elongation factor n=3 Tax=Verru... 68 8e-11 UniRef50_B1ZQE9 GreA/GreB family elongation factor n=1 Tax=Opitu... 68 1e-10 UniRef50_C1CW74 Putative transcription elongation factor n=1 Tax... 68 1e-10 UniRef50_B7CAB2 Transcription elongation factor n=5 Tax=Erysipel... 68 1e-10 UniRef50_Q2N9J5 Transcription elongation factor n=2 Tax=Erythrob... 67 2e-10 UniRef50_Q9JVD0 Transcription elongation factor greB n=64 Tax=Ba... 66 2e-10 UniRef50_B6BTF1 GreA/GreB family elongation factor n=2 Tax=Betap... 66 2e-10 UniRef50_D1R523 Putative uncharacterized protein n=1 Tax=Parachl... 66 3e-10 UniRef50_UPI0001746370 transcript cleavage factor/unknown domain... 66 3e-10 UniRef50_B4RDE4 Transcription elongation factor GreA/GreB, famil... 66 3e-10 UniRef50_A6STV7 Transcription elongation factor GreB n=2 Tax=Oxa... 66 3e-10 UniRef50_B0VIH5 Putative transcription elongation factor n=1 Tax... 66 4e-10 UniRef50_B3PM73 Transcription elongation factor greA n=1 Tax=Myc... 66 5e-10 UniRef50_UPI0000E87FB5 transcription elongation factor GreB n=1 ... 65 5e-10 UniRef50_C1ABM5 Transcription elongation factor GreA n=1 Tax=Gem... 65 6e-10 UniRef50_Q1IXC6 GreA/GreB family elongation factor n=1 Tax=Deino... 65 6e-10 UniRef50_C0ZE34 Putative uncharacterized protein n=1 Tax=Breviba... 65 7e-10 UniRef50_B1AIU2 Transcription elongation factor greA n=28 Tax=Ur... 65 8e-10 UniRef50_P47524 Transcription elongation factor greA n=4 Tax=Myc... 65 1e-09 UniRef50_Q6MF39 Putative uncharacterized protein n=1 Tax=Candida... 65 1e-09 UniRef50_A2SJD8 Transcription elongation factor n=50 Tax=Proteob... 64 1e-09 UniRef50_A9NGN4 Transcription elongation factor greA n=7 Tax=Ach... 64 1e-09 UniRef50_C7T958 Transcription elongation factor n=4 Tax=Lactobac... 64 1e-09 UniRef50_Q2G8D8 GreA/GreB family elongation factor n=4 Tax=cellu... 64 2e-09 UniRef50_C4ZAT8 Transcription elongation factor GreA n=21 Tax=Fi... 63 3e-09 UniRef50_Q1IZY0 GreA/GreB family elongation factor n=4 Tax=Deino... 63 3e-09 >UniRef50_P0AFW6 Regulator of nucleoside diphosphate kinase n=155 Tax=Enterobacteriaceae RepID=RNK_ECO57 Length = 136 Score = 193 bits (491), Expect = 1e-48, Method: Composition-based stats. Identities = 136/136 (100%), Positives = 136/136 (100%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV Sbjct: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 Query: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE 120 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE Sbjct: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE 120 Query: 121 VLELEYQPEAAGDYLL 136 VLELEYQPEAAGDYLL Sbjct: 121 VLELEYQPEAAGDYLL 136 >UniRef50_C5S652 GreA/GreB family elongation factor n=2 Tax=Proteobacteria RepID=C5S652_CHRVI Length = 171 Score = 190 bits (483), Expect = 1e-47, Method: Composition-based stats. Identities = 65/133 (48%), Positives = 86/133 (64%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 S+P II++ LDAER++ L+E P D L AEL RA++ P EMP +VV+MNS V+ Sbjct: 37 SQPKIILSSLDAERLENLIESLPRNAFPGMDELEAELARAEVVDPREMPPNVVSMNSTVR 96 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEV 121 FR +S E TLVYP M S ++S++APVG+ALLGL GD I W PGG + + Sbjct: 97 FRVMSTNEAFTLTLVYPKDMDASGGKISILAPVGSALLGLSSGDEIEWPKPGGGVLRVRI 156 Query: 122 LELEYQPEAAGDY 134 E+ YQPE AG+Y Sbjct: 157 EEVTYQPERAGEY 169 >UniRef50_Q2LTP9 Transcription elongation factor n=2 Tax=Deltaproteobacteria RepID=Q2LTP9_SYNAS Length = 134 Score = 190 bits (482), Expect = 2e-47, Method: Composition-based stats. Identities = 61/136 (44%), Positives = 85/136 (62%), Gaps = 2/136 (1%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 M++ I + + D ER++ LLE A +L AEL A + EEMP DVVTMNS V Sbjct: 1 MNKRRIYVTEQDMERLEDLLET--SKKSEYARSLEAELVNAVVVPSEEMPPDVVTMNSCV 58 Query: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE 120 F +L+ G TLVYP + ++ ++SV+APVG+AL+GL VG +I W +P G L Sbjct: 59 CFEDLTTGNRETITLVYPGQANMASGRVSVLAPVGSALIGLSVGQTIEWPMPNGRKRRLR 118 Query: 121 VLELEYQPEAAGDYLL 136 ++E+ YQPEAAGD+ L Sbjct: 119 IVEVLYQPEAAGDFHL 134 >UniRef50_Q3BX42 Regulator of nucleoside diphosphate kinase n=9 Tax=Gammaproteobacteria RepID=Q3BX42_XANC5 Length = 146 Score = 183 bits (464), Expect = 2e-45, Method: Composition-based stats. Identities = 58/131 (44%), Positives = 84/131 (64%) Query: 4 PTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFR 63 P+I+++ D R++ LL+ PA+ P A AL+ EL RA++ P+++P DVVTM+SR++ Sbjct: 11 PSILVSSHDLARLEALLDSPAFNKHPAATALSDELGRARVLPPDQIPGDVVTMHSRIECE 70 Query: 64 NLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLE 123 + GE TLVYP + + ++SV+APVG+ALLGL VG SI W P G L V Sbjct: 71 DQLHGERHTLTLVYPHEADVQHGRISVLAPVGSALLGLSVGQSIDWRTPDGRDLRLRVTA 130 Query: 124 LEYQPEAAGDY 134 + QP AAGD+ Sbjct: 131 VHDQPAAAGDF 141 >UniRef50_A6VVR5 GreA/GreB family elongation factor n=15 Tax=Proteobacteria RepID=A6VVR5_MARMS Length = 137 Score = 179 bits (454), Expect = 3e-44, Method: Composition-based stats. Identities = 58/136 (42%), Positives = 88/136 (64%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 M RP I I+ LDA R++ +L+ +Y+ P D L E++RA++ P +MP ++VTMNS V Sbjct: 2 MQRPQITISSLDAVRLEKILDSLSYSQFPNKDDLQEEINRAEIVEPRDMPDNIVTMNSTV 61 Query: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE 120 F+ LS + +TLVYP + +SV+APVG+ALLGL+ GD I W P G + Sbjct: 62 TFKVLSSEKEFSKTLVYPKDANGAEDTVSVLAPVGSALLGLKEGDQIDWPKPNGDVLSVV 121 Query: 121 VLELEYQPEAAGDYLL 136 +++++YQPE AG++ L Sbjct: 122 IMKVDYQPERAGEFQL 137 >UniRef50_Q6MQZ8 Regulator of nucleoside diphosphate kinase n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MQZ8_BDEBA Length = 138 Score = 177 bits (450), Expect = 8e-44, Method: Composition-based stats. Identities = 59/135 (43%), Positives = 84/135 (62%), Gaps = 3/135 (2%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 + P I++ D D R+ L+ Q P A+AL EL RA + + +E+P +VVTMNSRV+ Sbjct: 7 TEPRILVTDQDFHRLSALVSQVEG---PFAEALEEELSRANVIAQKEIPKNVVTMNSRVQ 63 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEV 121 F + G+ TLVYP +LS++APVG ALLGL VG I+W+LP G + L+V Sbjct: 64 FLDEVSGQESEMTLVYPQDAKLEEGRLSILAPVGIALLGLSVGQEINWKLPNGQSKKLKV 123 Query: 122 LELEYQPEAAGDYLL 136 + YQPEA+G++ L Sbjct: 124 QAVTYQPEASGNFDL 138 >UniRef50_B5EI69 GreA/GreB family elongation factor n=6 Tax=Desulfuromonadales RepID=B5EI69_GEOBB Length = 143 Score = 173 bits (440), Expect = 1e-42, Method: Composition-based stats. Identities = 52/138 (37%), Positives = 86/138 (62%), Gaps = 4/138 (2%) Query: 2 SRPTIIINDLDAERIDILLEQPA---YAGLPIADALNAELDRAQMCSPEEMPHDVVTMNS 58 ++ +++ + D ER++ L+++ L EL RA++ P +P DV+TMNS Sbjct: 7 AQRQVVVTEFDMERLEALIDKARSTQTRDSKNLKELGEELVRAEVVDPAGIPPDVITMNS 66 Query: 59 RVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATH 118 +V ++L E V TLV+P + ++ ++S++APVG A++G R GD I W +PGG+ + Sbjct: 67 KVCLQDLDSEEELVYTLVFPNEADLASGKISILAPVGTAMIGFRTGDRITWPVPGGM-KN 125 Query: 119 LEVLELEYQPEAAGDYLL 136 L+V ++ YQPEAAGDY L Sbjct: 126 LKVKKILYQPEAAGDYHL 143 >UniRef50_B8GS58 GreA/GreB family elongation factor n=22 Tax=Proteobacteria RepID=B8GS58_THISH Length = 137 Score = 172 bits (436), Expect = 3e-42, Method: Composition-based stats. Identities = 59/133 (44%), Positives = 86/133 (64%) Query: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKF 62 +P+I ++ LD +R++ LL+ L L AEL+RA + P ++P +VTMNSRV+F Sbjct: 4 QPSITLSSLDLDRLEHLLDSLPREALANHRQLLAELERANVVEPSQVPPTLVTMNSRVRF 63 Query: 63 RNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVL 122 R +G RTLVYP+ M ++SV+AP+G+ALLGL VGDSI W P G ++ ++ Sbjct: 64 RVEPEGREFQRTLVYPSGMDGDEEKISVLAPIGSALLGLSVGDSIAWPTPKGGEMNVRIM 123 Query: 123 ELEYQPEAAGDYL 135 E+ YQPEAAG+ Sbjct: 124 EILYQPEAAGEMH 136 >UniRef50_A0LL17 GreA/GreB family elongation factor n=3 Tax=Bacteria RepID=A0LL17_SYNFM Length = 141 Score = 170 bits (431), Expect = 1e-41, Method: Composition-based stats. Identities = 51/140 (36%), Positives = 79/140 (56%), Gaps = 6/140 (4%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIAD-----ALNAELDRAQMCSPEEMPHDVVTM 56 R I ++D D +R++ L+E + D L EL +A++ + +P D VTM Sbjct: 3 KRRKIYVSDYDMKRLEKLIELLSEDEWDDRDTKHLQVLEEELRKAEVVAARNIPRDTVTM 62 Query: 57 NSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVA 116 NS+V+ ++L G + LV+P + ++SV+AP+G AL+G VGD I W +P G Sbjct: 63 NSKVRVKDLDTGIETIYHLVFPGEADVKQNRISVLAPIGTALIGYAVGDVIQWNVPAGT- 121 Query: 117 THLEVLELEYQPEAAGDYLL 136 L + E+ YQPEAAGD+ L Sbjct: 122 KKLRIEEILYQPEAAGDFHL 141 >UniRef50_Q1H3Z9 GreA/GreB family elongation factor n=1 Tax=Methylobacillus flagellatus KT RepID=Q1H3Z9_METFK Length = 138 Score = 168 bits (427), Expect = 4e-41, Method: Composition-based stats. Identities = 58/139 (41%), Positives = 84/139 (60%), Gaps = 4/139 (2%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIAD---ALNAELDRAQMCSPEEMPHDVVTMN 57 M + I + D +R+ ++EQ G P D L EL R++ E++ DVVTMN Sbjct: 1 MLQGAIQVTSFDMDRLFSMIEQLRKNGFPETDNLARLEDELARSEEVPSEQVGADVVTMN 60 Query: 58 SRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVAT 117 SRV R+ ++G TLV+P+ S ++SV+AP+G A+LG RVGD I W +PGGV Sbjct: 61 SRVLLRDEANGHEMSCTLVFPSDADASANRISVVAPLGTAILGYRVGDVIDWAMPGGV-R 119 Query: 118 HLEVLELEYQPEAAGDYLL 136 +L+++YQPEAAGD+ L Sbjct: 120 QYRILKIDYQPEAAGDFHL 138 >UniRef50_Q7MD62 Transcription elongation factor n=10 Tax=Proteobacteria RepID=Q7MD62_VIBVY Length = 135 Score = 166 bits (421), Expect = 2e-40, Method: Composition-based stats. Identities = 57/132 (43%), Positives = 87/132 (65%), Gaps = 2/132 (1%) Query: 5 TIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRN 64 +I ++ LD +RI LLE+ A P + L ELDRA + +P++MP ++VTMNS V+F Sbjct: 6 SICVSTLDMDRISALLEKMANLS-PELEKLENELDRANVLAPQQMPDNIVTMNSTVRFTF 64 Query: 65 LSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 + +V +TLVYP ++ + + +S+ APVG+ALLGL VG + W +PGG +E+LE+ Sbjct: 65 VGSDKVMEKTLVYPDQVRNPDD-VSIFAPVGSALLGLSVGQQLTWPMPGGAERTIEILEV 123 Query: 125 EYQPEAAGDYLL 136 YQPE G++ L Sbjct: 124 TYQPERMGEFHL 135 >UniRef50_A4XNX9 GreA/GreB family elongation factor n=16 Tax=Bacteria RepID=A4XNX9_PSEMY Length = 135 Score = 165 bits (417), Expect = 5e-40, Method: Composition-based stats. Identities = 64/131 (48%), Positives = 81/131 (61%), Gaps = 2/131 (1%) Query: 4 PTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFR 63 P I I LD +R++ LL+ G P A AL AELDRA++ +E+P +VTMNSRV R Sbjct: 5 PAITITRLDLQRLERLLDSLDEFG-PGAAALQAELDRAEVVGLDEVPAGLVTMNSRVHCR 63 Query: 64 NLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLE 123 S G+ TLVYP +S++APVG+ALLGL VG I W PGG L +L Sbjct: 64 EESSGKDYHLTLVYPQDAGG-EGTVSILAPVGSALLGLSVGQHIDWPAPGGKQLKLTLLA 122 Query: 124 LEYQPEAAGDY 134 +EYQPEAAG+Y Sbjct: 123 VEYQPEAAGEY 133 >UniRef50_B5JTX6 Transcription elongation factor n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JTX6_9GAMM Length = 138 Score = 163 bits (413), Expect = 2e-39, Method: Composition-based stats. Identities = 53/135 (39%), Positives = 80/135 (59%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 + P I + +LD RI+ LLE+ L EL R ++ S +E+ DVVTMNSRVK Sbjct: 4 THPPITLPELDVARIESLLEKLDLKAKNNHTELFEELYRCRIVSSQEVSPDVVTMNSRVK 63 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEV 121 + L + TL YP +++ ++ +S++AP+G+A++GL VG I W LP G L + Sbjct: 64 YTRLDTQQQSTLTLCYPDQISRADDAVSILAPIGSAIIGLSVGQIIDWPLPNGKNAPLRI 123 Query: 122 LELEYQPEAAGDYLL 136 EL +QPE +G+Y L Sbjct: 124 DELLFQPERSGNYTL 138 >UniRef50_B9MBQ3 GreA/GreB family elongation factor n=6 Tax=Betaproteobacteria RepID=B9MBQ3_DIAST Length = 135 Score = 162 bits (410), Expect = 4e-39, Method: Composition-based stats. Identities = 62/133 (46%), Positives = 82/133 (61%), Gaps = 2/133 (1%) Query: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKF 62 +P II++ LD ERI+ LLE+ P +AL AELDRA + P++MP +VVTMNS V+F Sbjct: 4 KPHIILSSLDLERIEALLEKQTAP-FPGREALEAELDRADVFDPKDMPPNVVTMNSTVRF 62 Query: 63 RNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVL 122 L G+ TLVYP +M S ++SV APVG ALLGL VGD P G + V Sbjct: 63 TLLETGKTNTLTLVYPKEMDGSGDKVSVFAPVGIALLGLGVGDEFQMPSPTG-QVTVRVD 121 Query: 123 ELEYQPEAAGDYL 135 +++QPE AG+ Sbjct: 122 AIDFQPENAGELH 134 >UniRef50_Q3K4S3 Regulator of nucleoside diphosphate kinase n=2 Tax=Pseudomonas fluorescens RepID=Q3K4S3_PSEPF Length = 136 Score = 161 bits (409), Expect = 5e-39, Method: Composition-based stats. Identities = 60/135 (44%), Positives = 81/135 (60%), Gaps = 2/135 (1%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRA-QMCSPEEMPHDVVTMNSR 59 M+ P+I + LD +R++ L++ LP AL ELDRA + +E+P DVVTMNSR Sbjct: 1 MTAPSITLTRLDVQRLERLIDSLDDT-LPGVIALQTELDRADTLVGHDEVPADVVTMNSR 59 Query: 60 VKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHL 119 V R S G+ TLVYP ++S++APVG+ALLGL+VG I W PGG L Sbjct: 60 VHCREESSGKDYHLTLVYPKHANADEGKVSILAPVGSALLGLKVGQHIDWPAPGGKTLKL 119 Query: 120 EVLELEYQPEAAGDY 134 +LE+E QP GD+ Sbjct: 120 TLLEVESQPSNGGDF 134 >UniRef50_C6RP41 GreA/GreB family elongation factor n=4 Tax=Acinetobacter RepID=C6RP41_ACIRA Length = 134 Score = 161 bits (409), Expect = 5e-39, Method: Composition-based stats. Identities = 51/134 (38%), Positives = 76/134 (56%), Gaps = 1/134 (0%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 M++P III+ D R++ +LE ++ I + L EL RA++ P E+P +VV+MN+RV Sbjct: 1 MAKPNIIISSQDLHRLETMLEHQSHMTQTI-EHLEDELARAEVVEPHEIPANVVSMNTRV 59 Query: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE 120 E LVYP Q++V+AP+GAA+LGL G I W P G ++ Sbjct: 60 LITIAPSTEPTEIQLVYPHDFRGDKGQVNVLAPIGAAILGLAEGQEIEWPQPDGHLMKVK 119 Query: 121 VLELEYQPEAAGDY 134 + ++ YQPE GDY Sbjct: 120 IEKVLYQPEREGDY 133 >UniRef50_Q3SMM4 GreA/GreB family elongation factor n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SMM4_THIDA Length = 138 Score = 159 bits (403), Expect = 3e-38, Method: Composition-based stats. Identities = 62/134 (46%), Positives = 81/134 (60%), Gaps = 1/134 (0%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 +RP I +++ D ER++ +L LP A+AL ELDRA++ PE MP DVVTMNSR++ Sbjct: 5 TRPAITVSERDLERLEDMLAGLPD-DLPGAEALRDELDRAEILRPEAMPADVVTMNSRIR 63 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEV 121 F G+ TLVYP T S QL V P G A+LGL VG I W+ P G + Sbjct: 64 FVVEPAGKEMEMTLVYPRDFTGSPDQLPVTTPAGIAVLGLAVGQEIEWQAPNGQKVGARI 123 Query: 122 LELEYQPEAAGDYL 135 ++L YQPE AGDY+ Sbjct: 124 VDLAYQPERAGDYM 137 >UniRef50_B8G0E1 GreA/GreB family elongation factor n=2 Tax=Desulfitobacterium hafniense RepID=B8G0E1_DESHD Length = 138 Score = 158 bits (401), Expect = 3e-38, Method: Composition-based stats. Identities = 56/140 (40%), Positives = 79/140 (56%), Gaps = 6/140 (4%) Query: 1 MSRPTIIINDLDAERIDILLEQPAY----AGLPIADALNAELDRAQMCSPEEMPHDVVTM 56 MSR I I +D ER+ L+ + L EL+ A + E++P + +TM Sbjct: 1 MSR-KISITAVDRERLLKLINKEREFGSAKNKDYLKDLEHELNGADVVPSEKIPGNAITM 59 Query: 57 NSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVA 116 NSR+ ++L GE V TLVYP ++S++APVG A+LG GD I W++PGGV Sbjct: 60 NSRILLKDLETGEETVYTLVYPEDADLLEDKISILAPVGTAILGYLEGDIIDWKVPGGVV 119 Query: 117 THLEVLELEYQPEAAGDYLL 136 +V ++ YQPEAAGDY L Sbjct: 120 R-FKVEKILYQPEAAGDYHL 138 >UniRef50_B0SEQ9 Transcription elongation factor n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SEQ9_LEPBA Length = 138 Score = 157 bits (398), Expect = 9e-38, Method: Composition-based stats. Identities = 47/137 (34%), Positives = 78/137 (56%), Gaps = 3/137 (2%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADA--LNAELDRAQMCSPEEMPHDVVTMNSR 59 ++ I I +LD R+ ++ + + A+ L E++RAQ +++P +VVTMNS Sbjct: 3 TKKKISITNLDYIRLKKMILEYSKRNKTDANVQDLLGEIERAQKVDSKQIPSNVVTMNSV 62 Query: 60 VKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHL 119 ++ +NL E + LVYP Q+S++AP+ A +G + GD I W +P GV Sbjct: 63 IEIKNLEGIEFKEFRLVYPEDSNLDQNQISILAPIATASIGYKTGDVIFWNVPDGVYR-F 121 Query: 120 EVLELEYQPEAAGDYLL 136 ++ E++YQPEA GD+ L Sbjct: 122 QITEIKYQPEANGDFHL 138 >UniRef50_C9P6Y2 Regulator of nucleoside diphosphate kinase n=1 Tax=Vibrio metschnikovii CIP 69.14 RepID=C9P6Y2_VIBME Length = 136 Score = 156 bits (395), Expect = 2e-37, Method: Composition-based stats. Identities = 54/131 (41%), Positives = 82/131 (62%), Gaps = 2/131 (1%) Query: 5 TIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRN 64 II++ LD +RI L+++ + + L ELDRA + +PEE+P DVVTMNS VKF+ Sbjct: 7 AIIVSTLDMDRISALMDKLPKLSKEL-ERLENELDRATVLNPEEIPADVVTMNSTVKFKF 65 Query: 65 LSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 +V +TLVYP + ++ +S+ APVG+ALLGL G + W +P GV +E++++ Sbjct: 66 QGSDDVMQKTLVYPHDVKGNDD-ISIFAPVGSALLGLSKGQQLTWPMPNGVERTIEIIDI 124 Query: 125 EYQPEAAGDYL 135 QPE G+Y Sbjct: 125 IDQPERNGEYN 135 >UniRef50_B9NGJ6 Predicted protein n=12 Tax=cellular organisms RepID=B9NGJ6_POPTR Length = 145 Score = 155 bits (393), Expect = 4e-37, Method: Composition-based stats. Identities = 55/136 (40%), Positives = 85/136 (62%), Gaps = 3/136 (2%) Query: 2 SRP-TIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 SRP T+ + +LD R++ + + A L + L+A L+RA + SP+ +P DVVTMNSRV Sbjct: 12 SRPATLYLTELDVTRLEGIASRAGTAELD--EMLDALLERAAIVSPDAIPKDVVTMNSRV 69 Query: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE 120 + + R TLVYP + +LSV++P+G ALLG R GD++ + LP G A + Sbjct: 70 VCALEGEAKPRDWTLVYPDDADLATGRLSVLSPIGQALLGARSGDTVDYRLPDGRAQRVT 129 Query: 121 VLELEYQPEAAGDYLL 136 ++E+ +QPEA+G + L Sbjct: 130 IVEIAFQPEASGQFTL 145 >UniRef50_B2SQJ5 Regulator of nucleoside diphosphate kinase n=8 Tax=Xanthomonadaceae RepID=B2SQJ5_XANOP Length = 215 Score = 155 bits (392), Expect = 4e-37, Method: Composition-based stats. Identities = 47/130 (36%), Positives = 73/130 (56%) Query: 4 PTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFR 63 P+ +++ D R + LL+ P++ P A AL+ EL RA++ P+++ DVVTM+SR++ Sbjct: 83 PSTLVSSHDLARREALLDSPSFNKHPAATALSDELGRARVLPPDQIRGDVVTMHSRIECE 142 Query: 64 NLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLE 123 + G V+P + + ++ V+APVG+AL GL VG I W P G L Sbjct: 143 DQLHGGRHTLPPVHPHEADVQHGRICVLAPVGSALGGLSVGQRIDWRTPDGRDLRLRATA 202 Query: 124 LEYQPEAAGD 133 + QP AAGD Sbjct: 203 VHDQPTAAGD 212 >UniRef50_A9GAI2 Regulator of nucleoside diphosphate kinase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GAI2_SORC5 Length = 140 Score = 155 bits (391), Expect = 6e-37, Method: Composition-based stats. Identities = 48/135 (35%), Positives = 74/135 (54%), Gaps = 4/135 (2%) Query: 5 TIIINDLDAERIDILLEQPAYA---GLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 I++ + D +R+ LLE P +AL E++RA + P ++P +VVTMNSRV+ Sbjct: 7 PIVLTEFDRDRLARLLEALRARPGGDSPNLEALEIEIERADVVKPADIPPNVVTMNSRVE 66 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEV 121 +L E T+V+P + ++SV+AP+G ALLG R D + W P L + Sbjct: 67 LVDLDTEERLCVTVVFPGNADVKSGRISVLAPMGLALLGCREADEVEWPTPS-RTRRLRI 125 Query: 122 LELEYQPEAAGDYLL 136 + YQPEA+G + L Sbjct: 126 ERIAYQPEASGRFDL 140 >UniRef50_A5F052 Regulator of nucleoside diphosphate kinase n=31 Tax=Vibrio RepID=A5F052_VIBC3 Length = 135 Score = 154 bits (389), Expect = 1e-36, Method: Composition-based stats. Identities = 60/131 (45%), Positives = 83/131 (63%), Gaps = 2/131 (1%) Query: 5 TIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRN 64 TI+++ D +RI L++ A P + L ELDRA + P EMP DVVTMNS V+F+ Sbjct: 6 TIVVSTRDMDRISQLMDNLATLS-PELEKLEEELDRATVLEPAEMPEDVVTMNSTVRFKF 64 Query: 65 LSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 L EV +TLVYP + S +S+ APVG+ALLGL VG + W +PGG LE++++ Sbjct: 65 LGSDEVMEKTLVYPNDVKSSAD-VSIFAPVGSALLGLAVGQQLAWPMPGGTLKTLEIIDI 123 Query: 125 EYQPEAAGDYL 135 YQPE AG++ Sbjct: 124 VYQPERAGEFH 134 >UniRef50_A9MBQ4 GreA/GreB family elongation factor n=36 Tax=Brucella RepID=A9MBQ4_BRUC2 Length = 169 Score = 153 bits (386), Expect = 2e-36, Method: Composition-based stats. Identities = 46/123 (37%), Positives = 73/123 (59%), Gaps = 1/123 (0%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 +P I+++++D ER+ L + IA+ L AELDRA++ + + +P +VV M S V+ Sbjct: 7 KKPNIVVSEVDYERLMGLASNASERFEEIAEELMAELDRAKVVTAKRIPENVVQMGSTVE 66 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEV 121 FR +DG R TLVYP + + ++S++ P+G AL+GL G SI W G L V Sbjct: 67 FR-ANDGHERRVTLVYPGEADIAKNRISILTPIGTALIGLAPGQSISWTARDGKQHELNV 125 Query: 122 LEL 124 L++ Sbjct: 126 LKV 128 >UniRef50_Q11P04 Transcription elongation factor n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11P04_CYTH3 Length = 149 Score = 152 bits (385), Expect = 3e-36, Method: Composition-based stats. Identities = 46/133 (34%), Positives = 73/133 (54%), Gaps = 4/133 (3%) Query: 7 IINDLDAERIDILLEQPAYAGLP---IADALNAELDRAQMCSPEEMPHDVVTMNSRVKFR 63 IIN LD RI + + A++L EL ++ PEE+P++VVTM+S V Sbjct: 18 IINKLDYSRIQQCINEAKQFKSISVVEANSLMNELKLGKLVEPEEIPNNVVTMHSIVTIV 77 Query: 64 NLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLE 123 + + LVYP K N ++S+ +P+ AL+G ++GD I W +P G+ +++ Sbjct: 78 FMDSNKRVEFQLVYPDKADVKNNKISIFSPIATALIGYQIGDEIEWCVPAGMT-KIKIES 136 Query: 124 LEYQPEAAGDYLL 136 + YQPEAAG + L Sbjct: 137 IAYQPEAAGHFNL 149 >UniRef50_Q4KB20 Acetyltransferase, GNAT family family n=9 Tax=Bacteria RepID=Q4KB20_PSEF5 Length = 379 Score = 152 bits (385), Expect = 3e-36, Method: Composition-based stats. Identities = 44/131 (33%), Positives = 71/131 (54%), Gaps = 6/131 (4%) Query: 6 IIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNL 65 I I ++D R++ L+ + P L EL+RA + P+++ +V+TMNSR + Sbjct: 255 IYITEIDKARLESLI---VFEQGPTIVELEHELERAIVVKPQQVARNVITMNSRALLQLD 311 Query: 66 SDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 E LVYP + + SV + +GAA+LG + GD+I W + +E+ ++ Sbjct: 312 D--EEIEVALVYPEDADSTAGKHSVYSDIGAAILGYQEGDTIDWRISD-RTRRIEIRKVL 368 Query: 126 YQPEAAGDYLL 136 YQPEAAGD+ L Sbjct: 369 YQPEAAGDFHL 379 >UniRef50_A6C278 Nucleoside diphosphate kinase regulator protein, putative n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C278_9PLAN Length = 137 Score = 152 bits (384), Expect = 3e-36, Method: Composition-based stats. Identities = 49/135 (36%), Positives = 71/135 (52%), Gaps = 4/135 (2%) Query: 1 MSRPTIIINDLDAERIDILLEQ---PAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMN 57 M + I I D +R+ LL A P L+AEL A + EE+P D+VTMN Sbjct: 1 MPQQKIFITKTDYQRLQNLLLSDFTQAIGNKPYLSGLHAELAVAHIVESEEIPADIVTMN 60 Query: 58 SRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVAT 117 S V+ R+L E+ TLVYP +LS++ P+G A+LG R+GD + G + Sbjct: 61 STVRLRDLETDELETYTLVYPQDANIKEGKLSILTPIGTAILGYRIGDQLRSRALAGGS- 119 Query: 118 HLEVLELEYQPEAAG 132 + V E+ +QPE +G Sbjct: 120 KIRVEEILFQPERSG 134 >UniRef50_Q74EX3 Nucleoside diphosphate kinase regulator protein, putative n=1 Tax=Geobacter sulfurreducens RepID=Q74EX3_GEOSL Length = 135 Score = 151 bits (383), Expect = 4e-36, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 72/134 (53%), Gaps = 1/134 (0%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 M I + + D R++ +L+ + L EL A + P+++P +VVTMNSRV Sbjct: 1 MDTRAIYVTEDDLSRLEEILDTIPFRDRKDLQKLEDELASAMIVDPKDVPPNVVTMNSRV 60 Query: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE 120 K R+L + +LV+P + ++S+++P+G A+LG GD++ + A + Sbjct: 61 KLRDLRADKEMTISLVFPNDANIAEGKISILSPIGTAILGFGAGDTLDLAVRS-FAKKIR 119 Query: 121 VLELEYQPEAAGDY 134 + E+ YQP AAG + Sbjct: 120 IEEVLYQPGAAGSH 133 >UniRef50_Q13WN5 GreA/GreB family elongation factor n=50 Tax=Burkholderia RepID=Q13WN5_BURXL Length = 136 Score = 151 bits (383), Expect = 5e-36, Method: Composition-based stats. Identities = 44/135 (32%), Positives = 72/135 (53%), Gaps = 1/135 (0%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 T + +LD R++ P + D L+ L+RA + E+P +VVTMNS+ Sbjct: 3 KTKTCYLTELDVARLEKHAAAPGADA-RLQDMLDDVLERAVIVDSHEIPANVVTMNSQAT 61 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEV 121 + + GE T+VYP ++ +L+V +P G ALLG + G+ I + P G L++ Sbjct: 62 LVDETSGEHMTWTVVYPPNADFAHGRLNVFSPAGLALLGAKRGERIRFTPPSGTEKVLKL 121 Query: 122 LELEYQPEAAGDYLL 136 ++ +QPEAA D+ L Sbjct: 122 EKILFQPEAADDFTL 136 >UniRef50_C0N448 Putative uncharacterized protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N448_9GAMM Length = 137 Score = 150 bits (379), Expect = 1e-35, Method: Composition-based stats. Identities = 41/135 (30%), Positives = 68/135 (50%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 + +P I + LD R++ L+ P+ +L EL+RA++ ++P D+V+MNS V Sbjct: 2 IHQPDIYVASLDLIRLEDLINTLWNKHSPVRLSLEDELERAKIIDSFQLPDDIVSMNSTV 61 Query: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE 120 + TLVYP M + LS+++P+G ALLG++ G+ +W G Sbjct: 62 ELWVTKSDFPVYMTLVYPYGMKKDGSTLSILSPIGTALLGIKQGEEFYWPGRDGRNIKAR 121 Query: 121 VLELEYQPEAAGDYL 135 + + YQPE Y Sbjct: 122 LENILYQPERERHYN 136 >UniRef50_C3X2V3 GreA/GreB family elongation factor n=2 Tax=Oxalobacter formigenes RepID=C3X2V3_OXAFO Length = 140 Score = 149 bits (377), Expect = 2e-35, Method: Composition-based stats. Identities = 51/123 (41%), Positives = 73/123 (59%), Gaps = 1/123 (0%) Query: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKF 62 RP I + D ER++ +L Y +P L ELDRA + PEE+P DV+T+NS +F Sbjct: 14 RPPITVTTHDYERLEQMLRNAKYRNIPGMADLQRELDRANVVEPEELPEDVITINSTARF 73 Query: 63 RNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVL 122 + + TLVYP K +++SV+APVG+ALLGL G SI W++PG L VL Sbjct: 74 IDDCTNDQYEITLVYPDKADGV-SKISVLAPVGSALLGLSAGQSIPWQVPGRQKLQLRVL 132 Query: 123 ELE 125 +++ Sbjct: 133 DVK 135 >UniRef50_A6X582 GreA/GreB family elongation factor n=3 Tax=Rhizobiales RepID=A6X582_OCHA4 Length = 142 Score = 149 bits (376), Expect = 3e-35, Method: Composition-based stats. Identities = 44/130 (33%), Positives = 75/130 (57%), Gaps = 1/130 (0%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 +P I+++++D ER+ L + IA+ L ELDRA++ + +P +V+ M S V+ Sbjct: 7 KKPNIVVSEIDYERLMGLATNVSERLEEIAEELMVELDRAKVVPAKRLPQNVIHMGSTVE 66 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEV 121 FR+ +DG+ R TLVYP + + ++S++ P+G AL+GL G SI W G L V Sbjct: 67 FRS-NDGQERRVTLVYPGEADIAQGKISILTPIGTALIGLAPGQSISWTARDGKQHELNV 125 Query: 122 LELEYQPEAA 131 L + + + + Sbjct: 126 LSVSNEAQVS 135 >UniRef50_C6X5Q8 Transcription elongation factor n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6X5Q8_FLAB3 Length = 170 Score = 146 bits (368), Expect = 3e-34, Method: Composition-based stats. Identities = 48/134 (35%), Positives = 74/134 (55%), Gaps = 4/134 (2%) Query: 6 IIINDLDAERI-DILLEQPAYAGLPI--ADALNAELDRAQMCSPEEMPHDVVTMNSRVKF 62 III D+ RI +++ + A+ L EL A++ ++P DVVTMNS VK Sbjct: 38 IIITKQDSTRIHKSIMDAKKNNSIKAEDAERLLRELHSAKIVESADIPADVVTMNSVVKI 97 Query: 63 RNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVL 122 ++ V +VYP + + ++S+ +PV AAL+G V D I W +P G+ + + Sbjct: 98 HFENNKTVTEFKIVYPEQANIKDRKISIFSPVAAALIGYSVNDEIDWIVPSGMTKII-ID 156 Query: 123 ELEYQPEAAGDYLL 136 E+ YQPEAAGD+ L Sbjct: 157 EIIYQPEAAGDFDL 170 >UniRef50_B3PF63 Regulator of nucleoside diphosphate kinase n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PF63_CELJU Length = 180 Score = 145 bits (366), Expect = 4e-34, Method: Composition-based stats. Identities = 44/124 (35%), Positives = 78/124 (62%), Gaps = 3/124 (2%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 + +++I++ D +R+ L+E P A+AL+ E+ RA + + ++P DVV M+S V Sbjct: 57 TETSLVISNSDYQRLVQLIE---DNDSPAAEALDIEIGRATLVADAQLPADVVAMDSEVT 113 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEV 121 F +L GE + LV+PA+ ++S+++PVG+AL+GLR+G SI W +P G L+V Sbjct: 114 FEDLDSGEQKTIQLVFPAQANVDQLKISILSPVGSALIGLRIGSSIDWPVPQGKVRRLKV 173 Query: 122 LELE 125 + ++ Sbjct: 174 IAVK 177 >UniRef50_A6GQE5 Nucleoside diphosphate kinase regulator n=1 Tax=Limnobacter sp. MED105 RepID=A6GQE5_9BURK Length = 122 Score = 145 bits (366), Expect = 5e-34, Method: Composition-based stats. Identities = 48/128 (37%), Positives = 64/128 (50%), Gaps = 7/128 (5%) Query: 8 INDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSD 67 +N+LD RI L P LNA LD A+ P+++P DVVTMNS Sbjct: 1 MNELDLARISKL-------NAPFPPELNAALDNAEFIKPQDIPADVVTMNSLFTIVETES 53 Query: 68 GEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEYQ 127 G L YP+ + +SV++PVGA+LLG + G W P G V E+ +Q Sbjct: 54 GSTNKLMLCYPSDAEPAKGYISVLSPVGASLLGRKAGTVAQWATPNGEQHFAVVKEILFQ 113 Query: 128 PEAAGDYL 135 PEA+GDY Sbjct: 114 PEASGDYT 121 >UniRef50_B8IFL5 GreA/GreB family elongation factor n=8 Tax=Methylobacterium RepID=B8IFL5_METNO Length = 141 Score = 143 bits (361), Expect = 2e-33, Method: Composition-based stats. Identities = 44/123 (35%), Positives = 65/123 (52%) Query: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKF 62 +P I + D ER+ L +A L ELDRAQ+ + V M +V+F Sbjct: 14 KPRIKMTVEDHERLSALAAAAQDRMPDVASCLADELDRAQIVAGRGRLPPFVRMGCQVEF 73 Query: 63 RNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVL 122 R+ + G V++ TLVYP + ++SV+ P+GAAL+GL G SI WE G+ L VL Sbjct: 74 RDDTTGRVQIVTLVYPGEANIEQGKISVLTPIGAALIGLSTGQSITWETRSGLTKSLTVL 133 Query: 123 ELE 125 ++ Sbjct: 134 DVR 136 >UniRef50_D1SYS0 GreA/GreB family elongation factor n=1 Tax=Acidovorax avenae subsp. avenae ATCC 19860 RepID=D1SYS0_9BURK Length = 139 Score = 142 bits (358), Expect = 4e-33, Method: Composition-based stats. Identities = 51/139 (36%), Positives = 71/139 (51%), Gaps = 9/139 (6%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 + P ++ DLD R+ L + +L L A + + DVVTMNSRV Sbjct: 5 LPHPERVLTDLDFARLSKLAARQLPPA-----SLADLLATADVTGSRAVDADVVTMNSRV 59 Query: 61 KFR----NLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVA 116 + + +DG +V TL YP + ++SV++PVG +LLGLRVGD W P G Sbjct: 60 ELEGSGTDGADGARQVLTLCYPQDADAAAGRVSVLSPVGCSLLGLRVGDVAAWRTPQGED 119 Query: 117 THLEVLELEYQPEAAGDYL 135 V + +QPEAAGDYL Sbjct: 120 CRATVAAILHQPEAAGDYL 138 >UniRef50_A1TUC9 GreA/GreB family elongation factor n=4 Tax=Burkholderiales RepID=A1TUC9_ACIAC Length = 136 Score = 141 bits (356), Expect = 7e-33, Method: Composition-based stats. Identities = 49/129 (37%), Positives = 71/129 (55%), Gaps = 5/129 (3%) Query: 7 IINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLS 66 ++ DLD R+ L Q P +L L+ A + S + DVVTM SRV+ + + Sbjct: 12 VLTDLDFARLSRLASQQ-----PAPPSLADLLENADVTSSRTVEADVVTMYSRVELVDTA 66 Query: 67 DGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 G +V T+ YP + +SV++PVG++LLGLRVG + W P G A V +++ Sbjct: 67 TGARQVLTICYPRDADLAAGFVSVLSPVGSSLLGLRVGQTARWCTPRGEACEATVAGIQH 126 Query: 127 QPEAAGDYL 135 QPEA GDYL Sbjct: 127 QPEAEGDYL 135 >UniRef50_Q5P744 Transcription elongation factor n=3 Tax=Proteobacteria RepID=Q5P744_AZOSE Length = 158 Score = 141 bits (356), Expect = 7e-33, Method: Composition-based stats. Identities = 47/127 (37%), Positives = 69/127 (54%), Gaps = 9/127 (7%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 M+ +I+ D D R+ + L AEL+RA + P+ +P VVTM+SRV Sbjct: 34 MNSEHLILTDNDFVRLMAM---------QPGPQLRAELERAVVVPPDFLPRHVVTMHSRV 84 Query: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE 120 ++ + + GE R +VYP + + ++SV APVGAALLGL V I W+ P G L Sbjct: 85 RYLDEASGEQREIQVVYPEEADVAAGKVSVFAPVGAALLGLSVDQVIEWDFPRGPRRRLR 144 Query: 121 VLELEYQ 127 V E+ +Q Sbjct: 145 VEEVLHQ 151 >UniRef50_A5V983 GreA/GreB family elongation factor n=1 Tax=Sphingomonas wittichii RW1 RepID=A5V983_SPHWW Length = 166 Score = 140 bits (353), Expect = 1e-32, Method: Composition-based stats. Identities = 43/129 (33%), Positives = 66/129 (51%) Query: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKF 62 RP I + D +AE + + +++ L E+DRA + +P DVVTM+S V+F Sbjct: 38 RPAIHMIDSEAETLANMAVAAEERIPQVSELLLEEIDRATLYKAARIPADVVTMHSHVEF 97 Query: 63 RNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVL 122 + ++G R LVYP ++S++ VGA L+GLR G SI W G L + Sbjct: 98 VDEANGTSRTVQLVYPKDADIDAGRVSILTLVGAGLIGLREGQSILWPGRDGHRRLLTIT 157 Query: 123 ELEYQPEAA 131 + + EAA Sbjct: 158 RVSREAEAA 166 >UniRef50_A5VGM9 GreA/GreB family elongation factor n=1 Tax=Sphingomonas wittichii RW1 RepID=A5VGM9_SPHWW Length = 137 Score = 139 bits (351), Expect = 2e-32, Method: Composition-based stats. Identities = 42/129 (32%), Positives = 67/129 (51%) Query: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKF 62 RP I + D +A+ + L A ++ L EL RA + + +P D+VTM+S V+F Sbjct: 9 RPPIHMIDSEADILADLATSAATRLPQVSQLLLEELGRATIHKADRIPGDIVTMHSVVQF 68 Query: 63 RNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVL 122 + + G+ LVYP + ++S++ PVGA L+GLR G SI W G L + Sbjct: 69 TDAASGKEHRYQLVYPKDADIAEGRISILTPVGAGLIGLRAGQSILWPDRDGHERLLTIA 128 Query: 123 ELEYQPEAA 131 ++ + AA Sbjct: 129 KVSRESLAA 137 >UniRef50_A1U1V6 GreA/GreB family elongation factor n=2 Tax=Marinobacter RepID=A1U1V6_MARAV Length = 128 Score = 138 bits (349), Expect = 4e-32, Method: Composition-based stats. Identities = 53/125 (42%), Positives = 75/125 (60%), Gaps = 1/125 (0%) Query: 4 PTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFR 63 P I +++ D R+ LLE+ A +AD L EL RA M +MP VVTMNSRV+F Sbjct: 5 PHITVSEEDYNRLSTLLERVAGQSD-VADGLEDELSRADMKPLADMPEGVVTMNSRVRFL 63 Query: 64 NLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLE 123 N GE LVYP ++ D++ ++S++AP GAA+LGL +G SI W + G HL+V+ Sbjct: 64 NEDTGEEHEVALVYPHEVGDADHKVSILAPAGAAMLGLSIGSSIEWPMKGRKPIHLKVIG 123 Query: 124 LEYQP 128 + P Sbjct: 124 VTRNP 128 >UniRef50_Q3SU57 GreA/GreB family elongation factor n=9 Tax=Bradyrhizobiaceae RepID=Q3SU57_NITWN Length = 151 Score = 138 bits (347), Expect = 6e-32, Method: Composition-based stats. Identities = 43/136 (31%), Positives = 66/136 (48%), Gaps = 11/136 (8%) Query: 4 PTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPE----------EMPHDV 53 P I I+ D +R+ L E A+ L E+DRA++ + ++ Sbjct: 11 PAIAISAHDIDRLRHLAEAAIEKYPATAEFLAREIDRAEIIPADGSLLDDTRDQRWKVNL 70 Query: 54 VTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPG 113 VTM S V F + G+ R TLVYP ++S+++P+GAAL+GL G SI ++ P Sbjct: 71 VTMQSEVTFIDDVSGQKRRVTLVYPEDADVDAGKISILSPIGAALIGLSAGQSIEFQTPS 130 Query: 114 GVATHLEVLELE-YQP 128 G L V+ + Y P Sbjct: 131 GGWRSLTVIAVWSYWP 146 >UniRef50_C6WYK0 GreA/GreB family elongation factor n=2 Tax=Methylophilaceae RepID=C6WYK0_METML Length = 125 Score = 136 bits (342), Expect = 2e-31, Method: Composition-based stats. Identities = 42/124 (33%), Positives = 66/124 (53%), Gaps = 9/124 (7%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 M +I++D D R+ +L + L EL RA + +++P DVV +NSRV Sbjct: 2 MEIDKLILSDQDYARLSMLAND---------ELLGDELSRAIVVPADQVPADVVRINSRV 52 Query: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE 120 + + S G R LV+P ++SV++PVG+ALLGL+ G I W P G + L+ Sbjct: 53 IYLDESSGLSREVELVFPEGADLKFGKISVLSPVGSALLGLKEGQVIDWPFPHGQSRRLK 112 Query: 121 VLEL 124 V+ + Sbjct: 113 VVSV 116 >UniRef50_B0T7C4 GreA/GreB family elongation factor n=1 Tax=Caulobacter sp. K31 RepID=B0T7C4_CAUSK Length = 139 Score = 135 bits (341), Expect = 3e-31, Method: Composition-based stats. Identities = 43/130 (33%), Positives = 70/130 (53%), Gaps = 1/130 (0%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 ++RP II+ + +A+R+ L + A AD L E++RA++ + +MP VV M S V Sbjct: 8 VARPDIILAETEADRLSALATRLRDAAPQAADLLLEEIERAEIRADLDMPRTVVRMESVV 67 Query: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE 120 +F + + G R LVYP + ++SV++ VGA L+GL +I W G L Sbjct: 68 QFVDEAHGNPRTVLLVYPRDADIAAGKVSVLSFVGAGLIGLSPHQAIQWPDRNGRQRTLR 127 Query: 121 VLELEYQPEA 130 +L++ PE Sbjct: 128 ILKVR-PPER 136 >UniRef50_A7IJH2 GreA/GreB family elongation factor n=4 Tax=Rhizobiales RepID=A7IJH2_XANP2 Length = 143 Score = 133 bits (336), Expect = 1e-30, Method: Composition-based stats. Identities = 45/126 (35%), Positives = 67/126 (53%), Gaps = 3/126 (2%) Query: 4 PTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFR 63 P ++++ D ER+ L +A+ L AELDRA++ +P V M S+V + Sbjct: 16 PALVLSHPDHERLAGLATAALDRIPDVAEELLAELDRARLVPIGRVPATAVQMGSKVTYE 75 Query: 64 NLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLE 123 + G R TLVYP + ++SVM P+GAAL+GL G SI W G L+V+E Sbjct: 76 --AGGNARTVTLVYPEDADIAAARVSVMTPIGAALIGLSKGQSICWTARDGRRHELKVIE 133 Query: 124 LEYQPE 129 ++ PE Sbjct: 134 VQ-PPE 138 >UniRef50_A7HFE1 GreA/GreB family elongation factor n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HFE1_ANADF Length = 164 Score = 133 bits (335), Expect = 2e-30, Method: Composition-based stats. Identities = 47/140 (33%), Positives = 73/140 (52%), Gaps = 8/140 (5%) Query: 5 TIIINDLDAERIDILLEQPAYAGLPIADA--------LNAELDRAQMCSPEEMPHDVVTM 56 +++ + DA R+ L + + + ADA L L A + P+ +P +VVTM Sbjct: 25 RLLLTEQDAARLRATLARASLESMASADARGENAVELLATALRSAIVVPPDRIPAEVVTM 84 Query: 57 NSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVA 116 SR+ +++ G R LVYP + +SV++PVG ALLGL G + W LP G Sbjct: 85 RSRLVLEDVASGARREVVLVYPEEERTHEGHVSVLSPVGVALLGLSEGALVGWPLPSGRT 144 Query: 117 THLEVLELEYQPEAAGDYLL 136 L+V ++YQPEA ++ L Sbjct: 145 AVLQVESVQYQPEAVEEFHL 164 >UniRef50_A8LN19 GreA/GreB family elongation factor n=8 Tax=Alphaproteobacteria RepID=A8LN19_DINSH Length = 148 Score = 132 bits (333), Expect = 3e-30, Method: Composition-based stats. Identities = 47/131 (35%), Positives = 66/131 (50%), Gaps = 2/131 (1%) Query: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKF 62 RP I+IN D I+ L E +AD L E+ RA++ +MP +V+ + F Sbjct: 18 RPRIVINADDLSHIEALAEGAMDRNPALADRLLEEIARARIVPAAKMPLNVIGIGKSATF 77 Query: 63 RNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVL 122 R+ + G+ R TLVYP S ++SVM P+G ALLGL G HW G L V+ Sbjct: 78 RDETTGQERTVTLVYPEDADISRARVSVMTPIGVALLGLAEGAVFHWNTRGEERRMLTVI 137 Query: 123 ELEYQ--PEAA 131 + PE+A Sbjct: 138 RVSDPAAPESA 148 >UniRef50_A9EFF1 GreA/GreB family elongation factor n=1 Tax=Oceanibulbus indolifex HEL-45 RepID=A9EFF1_9RHOB Length = 146 Score = 131 bits (330), Expect = 7e-30, Method: Composition-based stats. Identities = 44/124 (35%), Positives = 71/124 (57%), Gaps = 1/124 (0%) Query: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKF 62 P +I+N D ++ L E + +AD E+ RAQ+ ++MP DVV + S+V + Sbjct: 15 NPHLILNAADLVHLEELAEGMMHRHPTLADRFFEEIGRAQIVEDQQMPGDVVGIGSKVTY 74 Query: 63 RNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATH-LEV 121 R+ + G+ + TLVYP + +Q+SV+ P+G ALLGLR G S +W+ H L + Sbjct: 75 RDETTGQNKSVTLVYPEDADITRSQVSVITPIGVALLGLREGASFYWDTRRENQRHMLTI 134 Query: 122 LELE 125 L++E Sbjct: 135 LKVE 138 >UniRef50_Q98F06 Nucleoside diphosphate kinase regulator n=2 Tax=Mesorhizobium RepID=Q98F06_RHILO Length = 140 Score = 130 bits (328), Expect = 1e-29, Method: Composition-based stats. Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 3/125 (2%) Query: 2 SRP--TIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSR 59 RP I+I+D D +R+ L A+ L E+DRA + MP DVV M S Sbjct: 7 PRPSSRILISDTDHDRLTGLARALLDRAPETAEELLFEMDRAVVTDAAAMPADVVRMGSA 66 Query: 60 VKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHL 119 V R G + LVYP + + ++SV+ P+G AL+G +G ++ W GG + Sbjct: 67 VTVR-GEGGATQRIMLVYPGEADIAENRISVLTPMGTALIGASIGQAVCWSSRGGRELSV 125 Query: 120 EVLEL 124 V + Sbjct: 126 TVEAV 130 >UniRef50_A7HAZ2 GreA/GreB family elongation factor n=5 Tax=Myxococcaceae RepID=A7HAZ2_ANADF Length = 138 Score = 130 bits (328), Expect = 1e-29, Method: Composition-based stats. Identities = 52/122 (42%), Positives = 71/122 (58%), Gaps = 3/122 (2%) Query: 2 SRPTIIINDLDAERIDILLEQ-PAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 +R I + D +R+ L++Q A A+ L+AELDRA E P D+VTMN+RV Sbjct: 3 ARKPIHVTHADLDRLRALVDQHLAGRDARAAEQLDAELDRA--VPIEVAPPDLVTMNARV 60 Query: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE 120 F +L+ G R LVYP + ++SV+AP+GAALLGL VG+ I W LP G L Sbjct: 61 AFVDLASGVRRELVLVYPRDADVAAGRVSVLAPIGAALLGLSVGEEIDWPLPDGRVARLR 120 Query: 121 VL 122 +L Sbjct: 121 IL 122 >UniRef50_Q0BZP7 Regulatory protein n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0BZP7_HYPNA Length = 128 Score = 130 bits (327), Expect = 1e-29, Method: Composition-based stats. Identities = 45/124 (36%), Positives = 69/124 (55%), Gaps = 2/124 (1%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 ++RP I + D + ER+ L P AD L EL RA++ + E++P DVV M+ RV Sbjct: 4 ITRPPIYVTDAELERLSDLA-HAVQGREPAADMLIEELSRARVTAVEDVPVDVVRMHDRV 62 Query: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE 120 F TLVYP + ++ ++S++ VGA L+GL+VGD++ W G +E Sbjct: 63 NFV-YDGARYEDFTLVYPYEANIADKRISILTQVGAMLIGLQVGDAMQWAGRDGRGHSME 121 Query: 121 VLEL 124 VLE+ Sbjct: 122 VLEV 125 >UniRef50_B7L307 GreA/GreB family elongation factor n=1 Tax=Methylobacterium chloromethanicum CM4 RepID=B7L307_METC4 Length = 147 Score = 129 bits (326), Expect = 2e-29, Method: Composition-based stats. Identities = 48/131 (36%), Positives = 68/131 (51%), Gaps = 2/131 (1%) Query: 3 RPTIIINDLDAERIDILLEQ--PAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 RP +II D + + + A + L ELDRA + P +P VVTM++RV Sbjct: 10 RPPLIIPMSDFRFLREIAAGTGVSQARGSVVAWLAEELDRATVVPPGAVPPRVVTMHARV 69 Query: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE 120 ++R+ +VR TL YP + + +SV+ PVGAAL+GL G SI W P G L Sbjct: 70 EYRDDVTDQVRCVTLTYPGEEDAYASGISVLTPVGAALVGLSEGHSIRWRTPSGGLRGLT 129 Query: 121 VLELEYQPEAA 131 VL + + P A Sbjct: 130 VLRVRFAPHHA 140 >UniRef50_B0T793 GreA/GreB family elongation factor n=1 Tax=Caulobacter sp. K31 RepID=B0T793_CAUSK Length = 141 Score = 129 bits (326), Expect = 2e-29, Method: Composition-based stats. Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 1/123 (0%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 ++PTI + + D E + L + PA L E+ RA + P + P V + SR+ Sbjct: 18 AQPTIYVTEQDFEILSNLADAPAGRAF-GGRVLAHEMARALIVEPGQAPLPFVRIGSRID 76 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEV 121 +R+LS+G+ R L P + + ++SV++PVGAAL+G+ G + HW G ++V Sbjct: 77 YRDLSNGQTRSVRLSLPRDASIDDNRISVLSPVGAALVGMTAGQAFHWTDAEGRPRGVQV 136 Query: 122 LEL 124 + + Sbjct: 137 IAV 139 >UniRef50_C6VSR5 GreA/GreB family elongation factor n=2 Tax=Sphingobacteriales RepID=C6VSR5_DYAFD Length = 134 Score = 127 bits (320), Expect = 9e-29, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 63/125 (50%), Gaps = 1/125 (0%) Query: 5 TIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRN 64 +I+ D + + + +L EL+RA + E+P + +NS VK R Sbjct: 7 PVILGKDDFKLLKQFAQTFPDNNSSETMSLAYELNRAVVVEDNELPAGSIRLNSYVKVRE 66 Query: 65 LSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 + + ++V P + ++S++ P+GAAL+GL G+++ W++P G+ ++L++ Sbjct: 67 TTTNKEMAFSIVMPKDADIAKQRISILTPMGAALIGLCKGETVEWKMPAGI-RRFKILDV 125 Query: 125 EYQPE 129 Y E Sbjct: 126 WYDQE 130 >UniRef50_A4BB58 Nucleoside diphosphate kinase regulator n=1 Tax=Reinekea blandensis MED297 RepID=A4BB58_9GAMM Length = 142 Score = 126 bits (316), Expect = 2e-28, Method: Composition-based stats. Identities = 49/128 (38%), Positives = 75/128 (58%), Gaps = 3/128 (2%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 +P + I++ D +R+ L+ Y D L +ELDRA +C P E+P D V + S V+ Sbjct: 4 PKPDVFISEHDWQRLQRLVAH--YPDHEAIDWLESELDRATVCLPNELPADAVQLGSVVR 61 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEV 121 F+ S G+V +R LV P + + +SV++PVG ALLGLRVGD I W G +T + + Sbjct: 62 FQLSSSGQVYLRELVLPEQ-RQHDEHISVLSPVGMALLGLRVGDEIAWPSSPGQSTTVRI 120 Query: 122 LELEYQPE 129 L+++ E Sbjct: 121 LDVKQDRE 128 >UniRef50_Q2GA51 GreA/GreB family elongation factor n=1 Tax=Novosphingobium aromaticivorans DSM 12444 RepID=Q2GA51_NOVAD Length = 159 Score = 125 bits (314), Expect = 4e-28, Method: Composition-based stats. Identities = 44/122 (36%), Positives = 69/122 (56%) Query: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKF 62 RP II+ D +A+ + L + I+ L E+ RAQ+ +++P D V M S V+F Sbjct: 30 RPQIILIDSEADALADLALAASDRLPEISRMLMEEIGRAQIVPAQDLPPDAVAMRSVVRF 89 Query: 63 RNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVL 122 R+ + G VR TLVYPA+ + ++S++ PVGA L+GLR G SI W G + + Sbjct: 90 RDEATGAVRTVTLVYPAEADIAQDRVSILTPVGAGLIGLRAGQSIDWPNVRGKQRAITIE 149 Query: 123 EL 124 ++ Sbjct: 150 QV 151 >UniRef50_Q5QX12 Transcription elongation factor family protein n=1 Tax=Idiomarina loihiensis RepID=Q5QX12_IDILO Length = 129 Score = 124 bits (312), Expect = 8e-28, Method: Composition-based stats. Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 2/123 (1%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 +RP I+I+ +D I+ L++ D L EL RA++ P MP +V +N +V Sbjct: 7 TRPNIVISCVDMAVIEHHLDETRLPR-EFLDELEVELARAKIVEPNVMPANVACLNRQVT 65 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEV 121 F+ L G+V +TL P ++ + LSV AP+GAAL+GL VG SI W+ G +E+ Sbjct: 66 FKVLETGKVFTKTLTAPDQVDKYDDSLSVFAPLGAALIGLSVGQSIQWKTNRG-LQSVEI 124 Query: 122 LEL 124 + + Sbjct: 125 VHV 127 >UniRef50_B4RF21 Transcription elongation factor n=2 Tax=cellular organisms RepID=B4RF21_PHEZH Length = 214 Score = 123 bits (310), Expect = 1e-27, Method: Composition-based stats. Identities = 42/124 (33%), Positives = 61/124 (49%), Gaps = 4/124 (3%) Query: 4 PTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFR 63 PT+ + + D +R+ L + P A+ L ELDRA + E V + S V++R Sbjct: 95 PTVRVAEADYDRLLNLADH----DGPGAELLARELDRAIVVREGEKSRPFVRLGSTVEYR 150 Query: 64 NLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLE 123 + +VR LV P +LSV++PVGAALLGL VGD+ W P G + V Sbjct: 151 DRLTEKVRTVELVPPDAADIDANRLSVLSPVGAALLGLSVGDTFSWTAPDGRPRVVTVEA 210 Query: 124 LEYQ 127 + Sbjct: 211 VRRD 214 >UniRef50_Q15Z69 GreA/GreB family elongation factor n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15Z69_PSEA6 Length = 128 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 2/124 (1%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 +P III+ D ++ LE+ I A+ ELDRA + + +++P +VV + S+V Sbjct: 3 KQPDIIISTADLAELEYQLERSKLPDDAI-RAIENELDRATIVACKDLPENVVAIGSQVT 61 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEV 121 F+ L +V + L P +SV AP+G+AL+GL G I W+ G +E+ Sbjct: 62 FKILDSQKVFTKALCLPHDSVKFEDSISVFAPIGSALIGLSTGQCIKWQTQRG-QQSVEI 120 Query: 122 LELE 125 +++E Sbjct: 121 IKVE 124 >UniRef50_C6XWY5 Transcription elongation factor GreA/GreB domain protein n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XWY5_PEDHD Length = 125 Score = 122 bits (307), Expect = 3e-27, Method: Composition-based stats. Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 2/124 (1%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 M ++ ++ D + + LE+ + + L AEL A + + EE+P DVV + S Sbjct: 1 METKSLSLSKSDFKLLKEHLEKSNMSAYNK-EKLQAELKAATIYTEEELPSDVVCLKSEA 59 Query: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE 120 + N+ G+ LV P + ++SV AP+G AL G R GDSI+WE+P G+ + Sbjct: 60 RIANVKTGKEFTFKLVMPEEANIKAQKVSVFAPIGIALFGYRTGDSINWEMPDGI-QEFK 118 Query: 121 VLEL 124 +LE+ Sbjct: 119 ILEV 122 >UniRef50_Q98F07 Nucleoside diphosphate kinase regulator; Rnk n=2 Tax=Mesorhizobium RepID=Q98F07_RHILO Length = 180 Score = 122 bits (306), Expect = 4e-27, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 1/132 (0%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 M + D ++++LE+ PI L +L A + + + D+VT+NSRV Sbjct: 1 MKSTNCCLTTKDRAVLEVMLERRRAFADPIVHVLEHKLSSADVVPIDTVGPDIVTLNSRV 60 Query: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE 120 F ++ G + RTLV + LSV G +LG+ G + E G + Sbjct: 61 VF-SIDAGHAQTRTLVQNEVRGPVGSSLSVATRRGLCMLGMAQGQTASIEHADGRRESIL 119 Query: 121 VLELEYQPEAAG 132 + + YQPEAAG Sbjct: 120 IKAVLYQPEAAG 131 >UniRef50_C0A6F4 GreA/GreB family elongation factor n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A6F4_9BACT Length = 148 Score = 121 bits (304), Expect = 7e-27, Method: Composition-based stats. Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 8/131 (6%) Query: 3 RPTIIINDLDA----ERIDILLEQPAYAGLPIADALNAELDRAQMCSPEE-MPHDVVTMN 57 + I I+ D R++++ E L AE DRA + + MP VVT++ Sbjct: 4 QQPIYISRADLLQIRARLNLIAEGRHDR--ENLARLRAEFDRALIIEDDTAMPDGVVTLH 61 Query: 58 SRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVAT 117 V+ ++L E+ TL P ++S++AP+G ALLG +V + + WE+PGG A Sbjct: 62 CEVRLQDLDTNEIETYTLTLPEHADPEAHRISILAPIGTALLGYQVDNVVTWEMPGG-AR 120 Query: 118 HLEVLELEYQP 128 L +LE QP Sbjct: 121 RLRILEARRQP 131 >UniRef50_B4W8F1 Putative uncharacterized protein n=1 Tax=Brevundimonas sp. BAL3 RepID=B4W8F1_9CAUL Length = 141 Score = 119 bits (298), Expect = 3e-26, Method: Composition-based stats. Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 3/131 (2%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 SRP I ++ D + + L+ G +A L EL+RA +C P + P ++ + Sbjct: 12 SRPDIFLSARDHQTLSRLVGDMPAEG--VAGLLQEELERAVICEPGDRPRGAAPLHRWLH 69 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEV 121 + + + R +V P + ++SV++ VGA L+GL G +I W P G L Sbjct: 70 YVDGRSPQPRRIQIVLPNEADIDAGKVSVLSYVGAGLIGLVEGHTIAWTDPSGADRRLTP 129 Query: 122 LELEYQPEAAG 132 + +E PE G Sbjct: 130 VMIE-DPETPG 139 >UniRef50_Q930S2 Putative uncharacterized protein n=1 Tax=Sinorhizobium meliloti RepID=Q930S2_RHIME Length = 140 Score = 119 bits (298), Expect = 4e-26, Method: Composition-based stats. Identities = 40/119 (33%), Positives = 58/119 (48%), Gaps = 1/119 (0%) Query: 7 IINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLS 66 I D + L Q IA L +L+R + +++P DVV + S V + Sbjct: 14 FIGATDYRLLSRLAYQALSRDFDIAAELIEKLERPCVLPDDQVPPDVVKIGSIVTCE-VE 72 Query: 67 DGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 DG R +LVYP + ++SV+ PVG ALLGLR G ++ W G HL V+ +E Sbjct: 73 DGPCRTFSLVYPDDVDAEKGRISVLTPVGVALLGLRPGQAVEWFSRDGQRNHLIVVRVE 131 >UniRef50_B1ZU20 GreA/GreB family elongation factor n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZU20_OPITP Length = 143 Score = 118 bits (297), Expect = 5e-26, Method: Composition-based stats. Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 3/131 (2%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 M+ + + D ++ +L + G P L +EL R + +P + + S V Sbjct: 1 MNTSPLYFSIEDYTKLSLLATATSRPGTP--SQLRSELSRGVVVDATALPPTAIRLGSTV 58 Query: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE 120 + +L GE+ TLV P + +LSV+AP+G A++G G + W PGG L Sbjct: 59 EIEDLESGEIETYTLVLPEQANVDARKLSVLAPIGTAVIGCLQGAEVAWSTPGGT-RRLR 117 Query: 121 VLELEYQPEAA 131 + + E A Sbjct: 118 IGRVSPPAEPA 128 >UniRef50_A6EIL5 Nucleoside diphosphate kinase regulator protein, putative n=1 Tax=Pedobacter sp. BAL39 RepID=A6EIL5_9SPHI Length = 129 Score = 117 bits (294), Expect = 1e-25, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 6 IIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNL 65 ++I D + + + + +L+AEL RA + S EE P D + +NS V+ ++ Sbjct: 9 VVITADDYQLLKPYFTKTNPHAGEM--SLSAELSRAVILSNEEFPSDAIRLNSTVRIQDE 66 Query: 66 SDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 S GE+ +V P ++SV+ P+ AAL+G R GD++ W++P G + + E+ Sbjct: 67 STGEIMELIIVLPQHANIKEKKISVLTPIAAALIGFRQGDAVQWKVPAG-LKNFRITEV 124 >UniRef50_A3PS97 GreA/GreB family elongation factor n=4 Tax=Rhodobacter sphaeroides RepID=A3PS97_RHOS1 Length = 137 Score = 117 bits (294), Expect = 1e-25, Method: Composition-based stats. Identities = 41/127 (32%), Positives = 61/127 (48%), Gaps = 2/127 (1%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 SRP I + + ER+D L +A L +L A++ +P + DVVT+ S V Sbjct: 8 SRPAIDMTLI--ERLDTLAGAAIARLPDVAYPLITKLTSARLLAPARLSSDVVTIGSEVL 65 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEV 121 + + R TL +P S +S++ PVG ALLGL GD W+ G L V Sbjct: 66 YHDDQGARDRRVTLSWPEDADISRRSVSILTPVGVALLGLSAGDRFQWQTRAGERRSLTV 125 Query: 122 LELEYQP 128 L++ +P Sbjct: 126 LQVGSEP 132 >UniRef50_A4CMB9 Nucleoside diphosphate kinase regulator n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CMB9_9FLAO Length = 139 Score = 114 bits (287), Expect = 6e-25, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 6/132 (4%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIA----DALNAELDRAQMCSPEEMPHDVVTM 56 M ++I + + + A+ L ELD A++ EM +DVV Sbjct: 1 MKYKQLLIEKKEYVLLKRYVNLSAHYHDATLWQSIQKLLTELDSAKIVDEAEMQNDVVRF 60 Query: 57 NSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVA 116 +S + + +G R LV P + S ++S++ P+G AL G GD++ WE P G Sbjct: 61 HSIITVTS-ENGWSRRVQLVLPPERDVSKDKISILTPMGIALFGYAEGDTVSWEFPSG-P 118 Query: 117 THLEVLELEYQP 128 L + ++E +P Sbjct: 119 KRLRIEKVEQEP 130 >UniRef50_C7CFG6 Putative regulator n=1 Tax=Methylobacterium extorquens DM4 RepID=C7CFG6_METED Length = 149 Score = 113 bits (284), Expect = 1e-24, Method: Composition-based stats. Identities = 42/122 (34%), Positives = 61/122 (50%), Gaps = 1/122 (0%) Query: 4 PTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFR 63 P I + D +R+ G AD L EL RA +C P +P +VV++N RV +R Sbjct: 8 PPITVTTRDFDRLVAFSLDAHLRGDSHADFLLWELKRATLCPPCALPSEVVSVNCRVLYR 67 Query: 64 NLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPG-GVATHLEVL 122 + VRV L +P + + LSV +P+G ALLGLRVGD + + G + V Sbjct: 68 LDDEPGVRVHLLAHPDDLINLADGLSVASPLGTALLGLRVGDRMPFCDNRLGTQHVVTVE 127 Query: 123 EL 124 + Sbjct: 128 GI 129 >UniRef50_A7HXN2 GreA/GreB family elongation factor n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HXN2_PARL1 Length = 133 Score = 113 bits (284), Expect = 1e-24, Method: Composition-based stats. Identities = 42/122 (34%), Positives = 66/122 (54%), Gaps = 1/122 (0%) Query: 4 PTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFR 63 P I++ + + + + E +A L+ EL+RA++ +P DVV +NS V+F Sbjct: 10 PQIVVAEEQFDALSDIAEGLTGVLPHVAGFLDRELNRARLLPLAHVPSDVVKVNSTVEFT 69 Query: 64 NLSDGE-VRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVL 122 + GE V L +PA+ T + +S+ +PVG ALLGLR G SI W G L+VL Sbjct: 70 LDTRGERVERLKLAFPAESTAGDGYVSIASPVGVALLGLREGQSIEWTSRYGERRSLKVL 129 Query: 123 EL 124 ++ Sbjct: 130 KV 131 >UniRef50_A5FHU8 GreA/GreB family elongation factor n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FHU8_FLAJ1 Length = 132 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 4 PTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFR 63 PT +D R +++L+ A+ L+ ELDRA + E+ V+ +NS V Sbjct: 5 PTFCKSDYQFLR-ELILKSKNSTNTKEANQLSQELDRAVISKESELDSSVIRINSLVTIE 63 Query: 64 NLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLE 123 ++ + +V P+ +++S++AP+ A++G + D + WELP G+ L+++ Sbjct: 64 DVKANKQMKIQIVLPSYADVKQSKISILAPLSVAIIGFKENDEVDWELPAGI-KTLKIVA 122 Query: 124 L 124 + Sbjct: 123 V 123 >UniRef50_B8IHN9 GreA/GreB family elongation factor n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IHN9_METNO Length = 147 Score = 112 bits (281), Expect = 3e-24, Method: Composition-based stats. Identities = 38/124 (30%), Positives = 64/124 (51%), Gaps = 1/124 (0%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 S P I I++ D +R+ + G L +EL+RA +C E+P VV+ N RV Sbjct: 6 SLPPITISNYDFDRLVVYGLTAYMHGDRNVVFLFSELERATVCPAMELPDQVVSANCRVI 65 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHW-ELPGGVATHLE 120 +R + +R LV+P + + ++S +P+G ALLGL+VGD + + + G + Sbjct: 66 YRIDDEPCLRAHMLVHPCDLISPDDEISAGSPLGIALLGLKVGDRMPFCDTQTGGRHVVA 125 Query: 121 VLEL 124 V + Sbjct: 126 VEGV 129 >UniRef50_Q11G80 GreA/GreB family elongation factor n=1 Tax=Chelativorans sp. BNC1 RepID=Q11G80_MESSB Length = 176 Score = 107 bits (268), Expect = 9e-23, Method: Composition-based stats. Identities = 35/129 (27%), Positives = 54/129 (41%), Gaps = 1/129 (0%) Query: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKF 62 + + D E + + E+ + L +L+ A++ PE P DVVT+NSR+ F Sbjct: 4 KRGCTLTTRDFETLQQMFEEHRDRNEAMTMLLRHKLETARVTRPEVTPDDVVTLNSRISF 63 Query: 63 RNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVL 122 R + +G R + L + G ALLGL G + L+V Sbjct: 64 R-VGNGMPETRIICRDRSRGPLGYFLPITTIRGLALLGLTEGQMTPVSRGRSLVEILQVT 122 Query: 123 ELEYQPEAA 131 + YQPE A Sbjct: 123 AIHYQPERA 131 >UniRef50_C0QKN0 Transcription elongation factor n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QKN0_DESAH Length = 175 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 1/93 (1%) Query: 33 ALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMA 92 L ++ A++ P + D V SRV NL GE +V + ++SV + Sbjct: 84 ELGYKIASAKIIDPATVSKDCVRFASRVVIENLDSGEEVEYMIVGQEESDIHKGKISVSS 143 Query: 93 PVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 P+G ALLG + GD I + PGG + E++++ Sbjct: 144 PLGMALLGKQPGDEIVIQAPGG-KRNYEIVDIL 175 >UniRef50_A6EMP4 Transcription elongation factor n=4 Tax=Bacteroidetes RepID=A6EMP4_9BACT Length = 139 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 6/128 (4%) Query: 1 MSRPTIIINDLDAERIDILLE----QPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTM 56 M ++II + + +L + LN EL A + EEMP DV+ Sbjct: 1 MKYGSVIIEKKEYVFLKRILNISGYAADFEIQKSFKRLNEELKTAIIVDEEEMPTDVIRF 60 Query: 57 NSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVA 116 NS+V + +G + +V PA ++S++ +GAAL G GD++ WE P G Sbjct: 61 NSQVLI-STKNGWKKEFQIVSPALKDVKADKISILTVMGAALFGYAQGDTVEWEFPTGKN 119 Query: 117 THLEVLEL 124 + + ++ Sbjct: 120 L-ITIEKV 126 >UniRef50_B4RBL2 Transcription elongation factor n=1 Tax=Phenylobacterium zucineum HLK1 RepID=B4RBL2_PHEZH Length = 143 Score = 105 bits (263), Expect = 4e-22, Method: Composition-based stats. Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 2/124 (1%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 S P + + D + + ++ P L EL RA + P DVV + S V+ Sbjct: 9 SNPRVTVLDEEYAPLADIVCGSP-RATPGLALLWNELSRATLVQAGRAPADVVRLGSAVE 67 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEV 121 + +L+ E R LV P + + V +GAALLGLR GD HW P G L+V Sbjct: 68 YTDLTRRESRRIRLVLPREARPPALE-PVSGTIGAALLGLRPGDVFHWRAPSGELRSLQV 126 Query: 122 LELE 125 +E Sbjct: 127 DAVE 130 >UniRef50_A0LZA7 Transcription elongation factor n=1 Tax=Gramella forsetii KT0803 RepID=A0LZA7_GRAFK Length = 146 Score = 105 bits (262), Expect = 4e-22, Method: Composition-based stats. Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 6/129 (4%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGL----PIADALNAELDRAQMCSPEEMPHDVVTM 56 M +II + + + ++ Y LN EL A++ + EMP DV+ + Sbjct: 1 MRYGELIIEKKEYDFLKQIMSLAKYHKDTSYKASIYKLNEELKDARILTNSEMPLDVIRL 60 Query: 57 NSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVA 116 NS V E R +V P K ++SV+AP+G AL G GD+I W P G + Sbjct: 61 NSLVTIETPYAVE-RTYQIVTPEKGDIRKNKISVLAPMGLALFGYAQGDNITWTFPLGES 119 Query: 117 THLEVLELE 125 ++++ E++ Sbjct: 120 -YIKIKEVK 127 >UniRef50_B1ZD84 GreA/GreB family elongation factor n=4 Tax=Methylobacterium RepID=B1ZD84_METPB Length = 149 Score = 104 bits (261), Expect = 6e-22, Method: Composition-based stats. Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 1/124 (0%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 RP I + D +R+ G P AD L ++L+RA + P DVV + RV+ Sbjct: 6 KRPPITLPTYDFDRLVASGLAAYQRGDPYADLLLSKLERAASFAASPPPRDVVAVTCRVR 65 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWEL-PGGVATHLE 120 +R + VR LVYP + S ++S + +G A+LGLR GD I + G +E Sbjct: 66 YRLDDEPTVRAHRLVYPGHVIASEEEISAASALGVAMLGLRRGDRIPFRDNATGSEHVVE 125 Query: 121 VLEL 124 + ++ Sbjct: 126 IADV 129 >UniRef50_A6LPL4 Transcription elongation factor greA n=30 Tax=Clostridia RepID=GREA_CLOB8 Length = 160 Score = 104 bits (260), Expect = 9e-22, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 1/92 (1%) Query: 33 ALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMA 92 L L A + E+P D+V++ S+VK ++ E ++V A+ N ++S + Sbjct: 67 QLENMLKNAVVVDESEIPSDIVSVGSKVKVKDYEFDEEVEYSIVGSAEADPMNFKISNES 126 Query: 93 PVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 PVG AL+G +VGD + +P GV E+L + Sbjct: 127 PVGNALVGKKVGDVVEVTVPDGVN-KFEILGI 157 >UniRef50_UPI00016C498C transcription elongation factor greA n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C498C Length = 161 Score = 104 bits (260), Expect = 9e-22, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 1/93 (1%) Query: 32 DALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVM 91 DAL+ L RA + +P D V S+V+ ++ E LV P + ++ Sbjct: 65 DALSDRLSRAVIVDTSNLPKDTVAFGSKVRVLDVDVDEEETFELVSPGQENPDKGRILTG 124 Query: 92 APVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 +P+G L+G + GD++ ++P G ++LE+ Sbjct: 125 SPIGQGLIGRKKGDTVEIQVPSGT-IKFKILEI 156 >UniRef50_P64276 Transcription elongation factor greA n=48 Tax=delta/epsilon subdivisions RepID=GREA_HELPJ Length = 164 Score = 104 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 63/136 (46%), Gaps = 11/136 (8%) Query: 1 MSRPTIIINDLDAER----IDILLE-QPAYAGLPIADA----LNAELDRAQMCSPEEMPH 51 + RP I + ++D R + E A +A L+ + AQ+ P + H Sbjct: 24 VERPNI-VKEIDIARGHGDLKENAEYHAAKEKQRFIEARIVDLSEIVANAQVIDPSALAH 82 Query: 52 DVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWEL 111 + V+ S +K NL + + T+V + + +S +P+ +L+G GD++ +L Sbjct: 83 NKVSFGSTIKILNLDNDKEFSYTIVGSVESDPAKGLISFGSPIAKSLIGKSKGDAVSIQL 142 Query: 112 PGGVATHLEVLELEYQ 127 P G + E+L++ Y+ Sbjct: 143 PNGES-DFEILDIYYK 157 >UniRef50_Q4HT85 Transcription elongation factor n=1 Tax=Campylobacter upsaliensis RM3195 RepID=Q4HT85_CAMUP Length = 161 Score = 104 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 11/135 (8%) Query: 3 RPTIIINDLDAERID-ILLEQPAYAGLPIADALNAE--------LDRAQMCSPEEMPHDV 53 RP +++ ++D R L E Y AL L RAQ+ P H+ Sbjct: 26 RPAVVV-EIDVARSHGDLKENAEYHAAREKQALIESRIAELGGILSRAQVIDPASYEHES 84 Query: 54 VTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPG 113 V S V +L + TLV + +S+ +P+ A+LG + GD LP Sbjct: 85 VKFGSSVLIMDLESEKESKYTLVGTCESDLEKGYISIASPLARAMLGKKEGDEFKVRLPK 144 Query: 114 GVATHLEVLELEYQP 128 G + E+L + Y+P Sbjct: 145 GES-EFEILSVTYEP 158 >UniRef50_D0J9T5 Transcription elongation factor n=55 Tax=Bacteria RepID=D0J9T5_BLASP Length = 162 Score = 103 bits (256), Expect = 2e-21, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 8/134 (5%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADA--------LNAELDRAQMCSPEEMPHD 52 + RP I + +A L E Y + A L +L A++ ++ Sbjct: 27 IERPKISMQIAEARDKGDLSENAEYDAIKEAQEFLEMNIAKLKKKLSNARIIDGSQINRT 86 Query: 53 VVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELP 112 V++ S V+ +NL+ G ++ TLV + + ++S+ P+ LLG +VG H +LP Sbjct: 87 RVSILSTVRVKNLTYGGEQIYTLVPEGEADLKSGKISINTPISTGLLGKQVGQIAHIKLP 146 Query: 113 GGVATHLEVLELEY 126 + E+LE+ + Sbjct: 147 NKMILDYEILEIAF 160 >UniRef50_A5FRA2 Transcription elongation factor n=3 Tax=Dehalococcoides RepID=A5FRA2_DEHSB Length = 266 Score = 102 bits (255), Expect = 3e-21, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 1/95 (1%) Query: 33 ALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMA 92 + EL A++ + V M + VK R+L +GE + TLV P ++ ++S + Sbjct: 173 EIEHELKHAEVSEYTDNNTSKVNMGNTVKLRDLKNGEQCIYTLVSPKEIEPLKGRISASS 232 Query: 93 PVGAALLGLRVGDSIHWELPGGVATHLEVLELEYQ 127 P+G AL GD+I E+P G ++ + ++ ++ Sbjct: 233 PIGKALFNRSKGDNIEIEVPSGTLQYV-IEDISFK 266 >UniRef50_Q13CU9 Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris BisB5 RepID=Q13CU9_RHOPS Length = 156 Score = 102 bits (255), Expect = 3e-21, Method: Composition-based stats. Identities = 42/127 (33%), Positives = 60/127 (47%), Gaps = 2/127 (1%) Query: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKF 62 P + I D R+ + Q + P+ L +EL+RA + P V ++ V F Sbjct: 2 NPPVSIASRDFGRLRQIAVQALASRDPVGRFLFSELERAVVID-SPAPPLTVRLDDWVTF 60 Query: 63 RNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVL 122 R D + R LV P + LSV++PVGAAL+GLR G +H++ GV V Sbjct: 61 RADDDQPLESRILVLPGHYRRNALHLSVLSPVGAALVGLRPGARMHYQGVDGVQHVATVE 120 Query: 123 ELEYQPE 129 LE PE Sbjct: 121 SLE-PPE 126 >UniRef50_D2R891 Transcription elongation factor GreA n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R891_9PLAN Length = 164 Score = 102 bits (254), Expect = 4e-21, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 11/133 (8%) Query: 4 PTIIINDLDAERID-ILLEQPAYAGLPIADAL--------NAELDRAQMCSPEEMPHDVV 54 P I D R + L E Y A L +L +A + P MP D V Sbjct: 28 PDITQKIAD-ARAEGDLKENAEYHAQREAQGLLQAKINLIRNKLSKASIIDPSTMPRDQV 86 Query: 55 TMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGG 114 + + V +++ E TLV + + ++ + +P+G AL+G ++GD + P G Sbjct: 87 SFGTTVLVKDIDMDEEEEFTLVGAGEEDYNAGRILITSPLGQALVGKKIGDVVDVPAPKG 146 Query: 115 VATHLEVLELEYQ 127 LE+L L++ Sbjct: 147 SYQ-LEILTLKFD 158 >UniRef50_Q97EB6 Transcription elongation factor greA n=6 Tax=Clostridiales RepID=GREA_CLOAB Length = 158 Score = 101 bits (252), Expect = 8e-21, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 1/93 (1%) Query: 33 ALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMA 92 + L A + E+ +DVV++ S+V ++ E ++V A+ ++S + Sbjct: 67 QIENMLKNANVIDESELKNDVVSVGSKVMVKDYQFDEEIEFSIVGSAEADPIENKISNES 126 Query: 93 PVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 PVG+AL+G +VGD I +P GV + ++L ++ Sbjct: 127 PVGSALIGKKVGDEIEVNVPDGVDKY-KILAIK 158 >UniRef50_A5FHJ3 GreA/GreB family elongation factor n=3 Tax=Flavobacteriaceae RepID=A5FHJ3_FLAJ1 Length = 143 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 64/125 (51%), Gaps = 2/125 (1%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 MS+ II+ + I + + + L +EL A + +P DVV++N +V Sbjct: 18 MSQNNIILTTGTYDLIKDHVRRKKVT-PQEEELLLSELKHATQVLRKNLPEDVVSVNRKV 76 Query: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE 120 +++ + + + LV P K+ S ++SV++ G A++G +VGD I W G LE Sbjct: 77 TYKDHNTNQEKTILLVGPEKVKVSKNKISVLSDEGIAMVGYKVGDLIEWPAKKGH-LKLE 135 Query: 121 VLELE 125 +L++E Sbjct: 136 ILKVE 140 >UniRef50_A7HXN3 GreA/GreB family elongation factor n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HXN3_PARL1 Length = 171 Score = 99.2 bits (246), Expect = 3e-20, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 1/125 (0%) Query: 7 IINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLS 66 ++ D R+++ + P+ + A+L+ A++ S E+ V T+ S V++R + Sbjct: 26 LLTRHDFARLELACFEQLDLLNPMQPFVRAKLEEARIVSGNEIAETVATLGSIVRYR-IE 84 Query: 67 DGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 D + R L + + LSV+ P+G ALLG GD EL G + + +E+ Sbjct: 85 DRMLERRLLQLDNRHAPNGQYLSVLTPIGLALLGRSTGDLCEAELFNGAKLTIRIALIEH 144 Query: 127 QPEAA 131 QPEA Sbjct: 145 QPEAE 149 >UniRef50_Q04EK0 Transcription elongation factor greA n=4 Tax=Bacilli RepID=GREA_OENOB Length = 162 Score = 98.8 bits (245), Expect = 4e-20, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 46/92 (50%) Query: 33 ALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMA 92 L + AQ+ +VVT+ ++ F+ + DG+ T+V A+ + ++S + Sbjct: 67 QLQQMIQFAQVIDASSASKNVVTLGKKISFKEVPDGDEETYTIVGSAESDPLSGKISNDS 126 Query: 93 PVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 P+G ALL + GD + LP + +E+L + Sbjct: 127 PMGKALLDHKTGDKVEIPLPENHSVTVEILHV 158 >UniRef50_A8HR94 Transcription elongation factor greA n=5 Tax=Proteobacteria RepID=GREA_AZOC5 Length = 157 Score = 97.3 bits (241), Expect = 1e-19, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 1/93 (1%) Query: 33 ALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMA 92 L ++ RA++ ++ D+V + V + E RV +V ++ ++S+ + Sbjct: 64 ELEDKISRAEVIDVSKLSGDIVKFGATVTLVDEDTEEERVWQIVGDSEADAKAGRISISS 123 Query: 93 PVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 PV AL+G + G S+ P G A E++E+ Sbjct: 124 PVARALIGKKKGSSVEVVTPKG-ARSFEIVEVR 155 >UniRef50_Q1H282 GreA/GreB family elongation factor n=2 Tax=Proteobacteria RepID=Q1H282_METFK Length = 165 Score = 97.3 bits (241), Expect = 1e-19, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 2/99 (2%) Query: 28 LPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQ 87 L A L+ A + P P D V + V+ + +G +V + + + Sbjct: 69 DRDLRYLQARLESAIVVDPATQPTDTVLFGATVEVED-ENGNSHTFMIVGEDEADIATNR 127 Query: 88 LSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 +S ++P+ AL+G ++GDS+ W P G LE++ + Y Sbjct: 128 VSWVSPLAKALIGQKIGDSVTWHRPAG-NLELEIIAIHY 165 >UniRef50_A3ESJ0 Transcription elongation factor n=4 Tax=Bacteria RepID=A3ESJ0_9BACT Length = 160 Score = 96.9 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 1/95 (1%) Query: 33 ALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMA 92 L A++ A + S H +T + V+ L E + TLV + ++SV + Sbjct: 64 ELEAKIASAIVVSSAHQDHSRITFGATVRLVPLDSKEEKRYTLVGQEEADLKAGRISVHS 123 Query: 93 PVGAALLGLRVGDSIHWELPGGVATHLEVLELEYQ 127 PVG AL+G G+++ +P G + + E+ Y+ Sbjct: 124 PVGKALIGHSEGETVTIRVPAGEVQY-TIAEIFYE 157 >UniRef50_Q7UVA0 Transcription elongation factor greA n=3 Tax=Planctomycetaceae RepID=GREA_RHOBA Length = 159 Score = 96.9 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 1/95 (1%) Query: 32 DALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVM 91 + L ++ RA + +P D V V +++ G+ TLV + ++ V Sbjct: 64 NELRDKIARASIIDVSSLPKDEVVFGCTVTVEDVAYGDEEQFTLVGAGDEDYDSGKILVT 123 Query: 92 APVGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 +P G L+G +VG++ ++P G ++L++E+ Sbjct: 124 SPFGQGLVGKKVGETAEVDVPAG-KLKFKILKIEF 157 >UniRef50_Q3Z8E7 Transcription elongation factor greA n=2 Tax=Dehalococcoides RepID=GREA_DEHE1 Length = 156 Score = 96.5 bits (239), Expect = 2e-19, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 1/94 (1%) Query: 33 ALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMA 92 + EL A + + V M S VK R+ +GE TLV P ++ ++S + Sbjct: 64 EIEHELKYADVSEYTDTNTSKVNMGSTVKLRDPKNGECCTYTLVSPKEIEPLKGKISASS 123 Query: 93 PVGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 P+G A+ G+ I E+P G ++ + ++ + Sbjct: 124 PIGKAVFNRNKGEQIEIEVPSGTLQYI-IEDISF 156 >UniRef50_D1B632 Transcription elongation factor n=4 Tax=Synergistaceae RepID=D1B632_THEAS Length = 164 Score = 95.7 bits (237), Expect = 4e-19, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 1/92 (1%) Query: 33 ALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMA 92 L +L +A++ ++ V++ + V+ R+L G LV + ++S + Sbjct: 71 WLEYQLSKAKVVESSDIDTSTVSLGATVQLRDLDTGNTYTYVLVGSEEADPKANRISAQS 130 Query: 93 PVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 PVG A++G G+ + +P G HL + + Sbjct: 131 PVGKAIIGRAEGEEVIVRVPKGT-RHLRIERI 161 >UniRef50_B1MX52 Transcription elongation factor greA n=11 Tax=Firmicutes RepID=GREA_LEUCK Length = 160 Score = 95.7 bits (237), Expect = 4e-19, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 45/92 (48%) Query: 34 LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93 L ++ A++ P DVV++ V F+ L D E +V + ++S + Sbjct: 68 LKKMIENAEIIDPNATAADVVSLGKTVTFKELPDEEPETYAIVGSTESDPLAGKISNESA 127 Query: 94 VGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 + ALL +VGD + LP G + +E+L++E Sbjct: 128 MAVALLDKKVGDKVSVPLPSGESIDVEILKVE 159 >UniRef50_UPI0001C3129D transcription elongation factor GreA n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C3129D Length = 161 Score = 95.3 bits (236), Expect = 5e-19, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 44/92 (47%) Query: 33 ALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMA 92 L +L A + + DVV + S V+ + G+ +V A+ + +LS + Sbjct: 65 QLEEKLRAATVIDSRSVGTDVVGIGSSVQVADSQSGKSDTYVIVGSAEANPAERKLSNES 124 Query: 93 PVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 PVG AL+G + G++ +LP G L + ++ Sbjct: 125 PVGKALIGRKAGETATVQLPNGKQRELRITKI 156 >UniRef50_C0QWD9 Transcription elongation factor n=2 Tax=Brachyspira RepID=C0QWD9_BRAHW Length = 154 Score = 94.9 bits (235), Expect = 7e-19, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 1/92 (1%) Query: 33 ALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMA 92 L ++L ++ P + D VT RVK ++ S V +V + S +++++ Sbjct: 62 KLESDLAGCEIIDPANLDKDTVTFGKRVKVKDKSRNAVFEYRIVGELEADMSKNEITIVT 121 Query: 93 PVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 P+ LLG ++GD + ++P G LE+LE+ Sbjct: 122 PIAKGLLGKKIGDVVTIKVPAG-DKVLEILEI 152 >UniRef50_B3E3H5 Transcription elongation factor greA n=19 Tax=Proteobacteria RepID=GREA_GEOLS Length = 158 Score = 94.6 bits (234), Expect = 9e-19, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 1/95 (1%) Query: 33 ALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMA 92 L +L RA + + D V + V + + E +V + ++S + Sbjct: 65 ELQGKLARAHVVDLTGLKPDKVVFGATVTLYDTASEEEITYKIVGEDEADIKLGKISCTS 124 Query: 93 PVGAALLGLRVGDSIHWELPGGVATHLEVLELEYQ 127 PVG AL+G ++ DS+ ++P G + E++E++Y+ Sbjct: 125 PVGKALIGHKLDDSVKVKVPAGTKEY-EIIEIKYE 158 >UniRef50_Q30T56 Transcription elongation factor n=3 Tax=Campylobacterales RepID=Q30T56_SULDN Length = 174 Score = 94.6 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 5/118 (4%) Query: 14 ERIDILLEQPAYAGLPIADA----LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGE 69 +R + Q A L D LNA + +A + P + H V+ S V+ +L + Sbjct: 40 DRSENADYQAAKEKLRHIDKRLFYLNAMIQKAHIIDPSTLLHTKVSFGSSVRILDLESDK 99 Query: 70 VRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEYQ 127 V T+ + N +S+ +P+ +LG RV D +LP + E+LE+ Y+ Sbjct: 100 EEVYTICGVLESEPENGLISIHSPLAQVMLGKRVSDEFKIQLPL-MKKEYEILEIYYK 156 >UniRef50_Q3ATA7 Transcription elongation factor greA n=13 Tax=Bacteria RepID=GREA_CHLCH Length = 160 Score = 93.8 bits (232), Expect = 1e-18, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 8/121 (6%) Query: 9 NDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSD- 67 + DA R E+ + I D L ++L A + P+++ D V + + VK RNL + Sbjct: 47 AEYDAAR-----EEQSQIEARIGD-LESKLSAATILDPKQIKTDKVYILTSVKLRNLDNP 100 Query: 68 GEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEYQ 127 E+ TLV + ++SV +PVG +L+G VG + +P G H E+LE+ + Sbjct: 101 DEIIEYTLVSSEEADTDAGKISVRSPVGRSLIGKTVGAKVTIVVPKG-ELHYEILEIFVK 159 Query: 128 P 128 P Sbjct: 160 P 160 >UniRef50_A0AIU5 Transcription elongation factor greA n=99 Tax=Bacteria RepID=GREA_LISW6 Length = 160 Score = 93.4 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 1/90 (1%) Query: 35 NAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPV 94 + AQ+ E + +VT+ + V F L DGE T+V A+ ++S +P+ Sbjct: 69 ENMIRNAQIIDAAEAHNGLVTLGNTVTFIELPDGEEETYTIVGSAEADPFEGKISNDSPI 128 Query: 95 GAALLGLRVGDSIHWELPGGVATHLEVLEL 124 LLG + G+ + + P G ++++ ++ Sbjct: 129 AKGLLGHKEGEEVTIQTPAG-DMNVKIEKI 157 >UniRef50_B2S6W5 Transcription elongation factor greA n=39 Tax=Bacteria RepID=GREA_BRUA1 Length = 157 Score = 93.0 bits (230), Expect = 2e-18, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 9/132 (6%) Query: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALNA----ELD----RAQMCSPEEMPHDVV 54 RP II +A L E Y A +LN EL+ RA++ ++ D + Sbjct: 26 RPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEGRINELEDLVARAEVIDVSKLTGDRI 85 Query: 55 TMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGG 114 + V + E ++ +V + ++S+ +P+ AL+G GD+I PGG Sbjct: 86 KFGATVTMIDEDTEEEKIYQIVGDQEADVKEGRISISSPIARALIGKGEGDTIEVNAPGG 145 Query: 115 VATHLEVLELEY 126 + E++ L++ Sbjct: 146 -SRSYEIIALKF 156 >UniRef50_B9KH08 Transcription elongation factor n=9 Tax=Rickettsiales RepID=B9KH08_ANAMF Length = 174 Score = 93.0 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 12/136 (8%) Query: 3 RPTIIINDLDAERIDILLEQPAYAGLPIAD--------ALNAELDRAQMCSPEEMPHDVV 54 RP II + DA + L E Y L ++ RA++ E+ D V Sbjct: 38 RPKIIKSISDARELGDLSENAEYHAARERQGLVESKIMELESKRSRAEVIDVSELSGDTV 97 Query: 55 TMNSRVKF----RNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWE 110 + V V +V + S +S+ +P+ +LLG R GDS+ + Sbjct: 98 MFGATVTVSVYDEQTDSTGVMQYQIVGEYEADVSKNMISIKSPLVLSLLGRREGDSVEVK 157 Query: 111 LPGGVATHLEVLELEY 126 P G +++++E+ Sbjct: 158 TPRGDYKIYQIMKIEF 173 >UniRef50_D0LKY5 Transcription elongation factor n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LKY5_HALO1 Length = 169 Score = 92.2 bits (228), Expect = 4e-18, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 47/94 (50%), Gaps = 1/94 (1%) Query: 35 NAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPV 94 A+L +++ P ++ + V + V ++ G+ T+V + N ++SV APV Sbjct: 67 EAKLALSEVIDPTKLSGERVKFGATVTVEDIDTGDEATYTIVGEHEADIKNKRISVTAPV 126 Query: 95 GAALLGLRVGDSIHWELPGGVATHLEVLELEYQP 128 AL+G +GD + P G E++++++ P Sbjct: 127 ARALIGKAIGDETQVQTPKGT-RAFEIVDVKWLP 159 >UniRef50_A9WK05 Transcription elongation factor greA n=6 Tax=Chloroflexi (class) RepID=GREA_CHLAA Length = 157 Score = 91.9 bits (227), Expect = 5e-18, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 1/94 (1%) Query: 32 DALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVM 91 L L RA++ ++ + V + S V R DG T+V A+ ++S Sbjct: 65 RELKHLLSRAEVIDEDQASNGEVRVGSSVTVRFEDDGTEETWTIVGSAEANPRQGRISNE 124 Query: 92 APVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 +P+GAALLG R + + P GV L +L++ Sbjct: 125 SPLGAALLGKRARNKVTVHTPSGV-MKLTILKVR 157 >UniRef50_C9KJ19 Transcription elongation factor n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KJ19_9FIRM Length = 156 Score = 91.9 bits (227), Expect = 6e-18, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 3/92 (3%) Query: 34 LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93 L A++ + + DVV M S+V +++ G+ LV + ++S +P Sbjct: 67 LTAKIRNSHIIKAGA--GDVVQMGSKVTVKDIEFGDEETFMLVGSTEADPDEGKISNESP 124 Query: 94 VGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 +G ALLG + G I P G+ + E+L+++ Sbjct: 125 LGQALLGQKSGSVIDVHAPAGIIKY-EILDIK 155 >UniRef50_C1ZBG3 Transcription elongation factor n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZBG3_PLALI Length = 160 Score = 91.5 bits (226), Expect = 7e-18, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 3/96 (3%) Query: 32 DALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNT--QLS 89 ++L ++L + +P VV +RV +N DG++ V P + + ++ Sbjct: 63 NSLKSKLASCYIVDKSTLPKGVVAFGTRVTVKNTDDGDIEKYEFVGPGEEDYMSDVMKIL 122 Query: 90 VMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 +P+ +ALLG +V D + ++P G + E+ E+E Sbjct: 123 TTSPLASALLGKKVNDKVSIQVPRGTINY-EITEIE 157 >UniRef50_C6WVB7 GreA/GreB family elongation factor n=2 Tax=Methylophilaceae RepID=C6WVB7_METML Length = 168 Score = 91.1 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 7/121 (5%) Query: 12 DAERIDILLEQPAYAG-----LPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLS 66 + R+ + + + A LD A + P + H+ V + ++ + Sbjct: 49 ELNRLKLTADDTFAKDKVAEIERDLRYVRARLDSAILVDPTKQSHETVLFGATIEVED-G 107 Query: 67 DGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 G +V + S ++S ++P+ +LLG +VGD++ W+ P G +LE+L++ Y Sbjct: 108 AGAQHTFHIVGEDEADASINKVSWVSPLAKSLLGQKVGDTVTWQRPAG-NINLEILDIHY 166 Query: 127 Q 127 Q Sbjct: 167 Q 167 >UniRef50_Q2LR03 Transcription elongation factor greA n=1 Tax=Syntrophus aciditrophicus SB RepID=GREA_SYNAS Length = 161 Score = 90.7 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 1/96 (1%) Query: 33 ALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMA 92 L L + + + + D + + V S G+ LV P + S ++SV + Sbjct: 64 ELENNLALSNVIDLKMLSDDRIVFGATVIIEEASTGKQTNYQLVGPFESNISENKISVTS 123 Query: 93 PVGAALLGLRVGDSIHWELPGGVATHLEVLELEYQP 128 P+G AL+G +GD + PGG+ + EV+++ P Sbjct: 124 PIGKALIGKSIGDEVKVHTPGGI-RNFEVVDIYINP 158 >UniRef50_Q0B0N4 Transcription elongation factor greA n=6 Tax=Clostridia RepID=GREA_SYNWW Length = 159 Score = 90.7 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 51/93 (54%), Gaps = 1/93 (1%) Query: 33 ALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMA 92 +L L +A++ E++ DVV++ SR+ + + G TLV + + ++S + Sbjct: 67 SLEKTLKKARLMEDEDIRTDVVSLGSRITLKEMKSGREVTVTLVSSVESKLKDGKISDES 126 Query: 93 PVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 PVG A++G +V ++ E P G + +++++E Sbjct: 127 PVGKAIMGKKVKSTVSVEAPAGTIKY-KIIKVE 158 >UniRef50_Q817Z6 Transcription elongation factor greA n=141 Tax=cellular organisms RepID=GREA_BACCR Length = 158 Score = 90.3 bits (223), Expect = 1e-17, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 1/93 (1%) Query: 33 ALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMA 92 L + A + VVT+ V F+ L +G+ T+V A+ ++S + Sbjct: 67 QLENMIRNAVIIKDTGEVSTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDS 126 Query: 93 PVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 P+ +LLG ++G+ + + PGG +E++ ++ Sbjct: 127 PIAKSLLGKQIGEKVTIQTPGGEMQ-VEIVSVK 158 >UniRef50_Q057J4 Transcription elongation factor greA n=20 Tax=Proteobacteria RepID=GREA_BUCCC Length = 159 Score = 90.3 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 10/135 (7%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIAD--------ALNAELDRAQMCSPEEMP-H 51 ++RP I+ +A ++ L E Y + +L RAQ+ ++P Sbjct: 25 ITRPCIVKAIANARQLGDLKENAEYHSAREEQSFCENRICEIENKLLRAQIIDITKIPFK 84 Query: 52 DVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWEL 111 +V S V +S + V T+V + +S+ +P+ AL+G + D I Sbjct: 85 GIVIFGSTVTVLQISTSNIFVYTIVGDDEANYKEFSISIHSPMSRALIGKKKNDIIKVNT 144 Query: 112 PGGVATHLEVLELEY 126 P G ++ + ++EY Sbjct: 145 PTGYIKYI-IKKIEY 158 >UniRef50_A8F083 Transcription elongation factor greA n=13 Tax=Rickettsia RepID=GREA_RICCK Length = 162 Score = 90.3 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 1/95 (1%) Query: 33 ALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMA 92 L RA++ ++ D + + V + E +V + + ++S+ + Sbjct: 65 ELEDMAARAEIIDISKLSGDNIKFGATVTLIDDDTEEKVTYIVVGEYEADITRKRVSIAS 124 Query: 93 PVGAALLGLRVGDSIHWELPGGVATHLEVLELEYQ 127 P+ AL+G VGD + P G + EV+E+EY+ Sbjct: 125 PIAKALIGKSVGDFVEVTTPKG-SKSYEVVEVEYK 158 >UniRef50_C9RKD0 Transcription elongation factor n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RKD0_FIBSS Length = 151 Score = 89.5 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 2/103 (1%) Query: 21 EQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAK 80 E+ A L +L RAQ+ + D + + + +NL V LV P + Sbjct: 49 ERLASIDNIEMPKLQDQLARAQVI-AFDANSDTIKFGATITAKNLKTKREIVYQLVSPEE 107 Query: 81 MTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLE 123 N ++S +P+GAAL+G + GD++ P G E+++ Sbjct: 108 ADALNGKISFKSPIGAALMGKKRGDTVEVVTPKGKNQ-FEIID 149 >UniRef50_Q0A765 Transcription elongation factor greA n=23 Tax=Proteobacteria RepID=GREA_ALHEH Length = 158 Score = 89.2 bits (220), Expect = 4e-17, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 50/135 (37%), Gaps = 10/135 (7%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIAD--------ALNAELDRAQMCSPEEMPH- 51 + RP II +A L E Y + +L AQ+ P + Sbjct: 24 VERPRIIQAIAEAREHGDLKENAEYHAAREQQSFVEGRIQEIEGKLSNAQVIDPAAVNAQ 83 Query: 52 DVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWEL 111 V + V + G+ +V + +SV +P+ AL+G GD + + Sbjct: 84 GKVIFGATVDLVDEDSGKEVTYQIVGEDEADIKQGLVSVNSPIARALIGKEEGDLVTVQA 143 Query: 112 PGGVATHLEVLELEY 126 PGG E++E+ Y Sbjct: 144 PGG-EREYEIVEVRY 157 >UniRef50_C6XVH8 Transcription elongation factor n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XVH8_PEDHD Length = 125 Score = 89.2 bits (220), Expect = 4e-17, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 65/120 (54%), Gaps = 2/120 (1%) Query: 5 TIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRN 64 +II++ + + + + + + L EL A+ +++P DVVT+N+RV+ + Sbjct: 4 SIILSTGIFDLLKDHIRRRKLSKYN-QEKLEQELRNARQILSKDIPADVVTVNTRVRVKE 62 Query: 65 LSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 L G TLV PAK + + LS+++P+G A++G G + WE+P G+ + + E+ Sbjct: 63 LETGAEFNYTLVPPAKARNKHNTLSILSPIGVAMVGYSQGSELKWEMPEGIKAY-RIEEV 121 >UniRef50_Q725M4 Transcription elongation factor greA n=4 Tax=Desulfovibrionaceae RepID=GREA_DESVH Length = 163 Score = 88.0 bits (217), Expect = 8e-17, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%) Query: 43 MCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLR 102 + + + D V + VK +L GE + TL+ P + + +SV +PV A+LG Sbjct: 73 VIDLDTISGDKVMFGATVKIEDLESGEEKEYTLLGPDEADYAKGSISVQSPVARAMLGKE 132 Query: 103 VGDSIHWELPGGVATHLEVLELEY 126 GD I + P G H E++ + + Sbjct: 133 EGDEIVVDAPRG-KIHYEIVSIRF 155 >UniRef50_Q67JL1 Transcription elongation factor n=2 Tax=Clostridiales RepID=Q67JL1_SYMTH Length = 157 Score = 88.0 bits (217), Expect = 8e-17, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 1/92 (1%) Query: 34 LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93 L L A++ +VV + S V R+L G+ T+V + ++ ++S +P Sbjct: 67 LEKMLRNARVIDEPVGQQEVVVLGSTVVLRDLEYGDEHTYTIVGTTEADPAHNRISNESP 126 Query: 94 VGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 VG A++G RVG + + P GV + E++ ++ Sbjct: 127 VGRAIMGQRVGTVVAVDAPDGVFKY-EIVAIK 157 >UniRef50_D1PEW3 Transcription elongation factor n=1 Tax=Prevotella copri DSM 18205 RepID=D1PEW3_9BACT Length = 154 Score = 88.0 bits (217), Expect = 9e-17, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 45/88 (51%), Gaps = 1/88 (1%) Query: 38 LDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAA 97 L+ A++ + D V + S++K NL++ T+V P + + ++S+ +P+ A Sbjct: 67 LENARVIDKSRLKSDTVGLLSKIKITNLANKCSMNYTIVNPHEADLHSGKISIKSPIAKA 126 Query: 98 LLGLRVGDSIHWELPGGVATHLEVLELE 125 LLG + G+ + ++P G + +E Sbjct: 127 LLGKKAGEEVMVKVPAG-LLKFRLDSVE 153 >UniRef50_A0LK20 Transcription elongation factor greA n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=GREA_SYNFM Length = 156 Score = 87.6 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 1/92 (1%) Query: 34 LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93 L ++ ++ P + + S V + GEV LV P + + +SV++P Sbjct: 65 LCQKMGECEIVEPSDNDNGRAIFGSTVVVEDTETGEVTSYRLVGPYEADVQSGTISVVSP 124 Query: 94 VGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 +G AL+G G+ I + P GV ++EVLE+ Sbjct: 125 LGKALIGKEEGEEIRVQTPKGV-RNIEVLEIR 155 >UniRef50_Q1LSK1 Transcription elongation factor greA n=16 Tax=Proteobacteria RepID=GREA_BAUCH Length = 158 Score = 86.9 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 10/135 (7%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIAD--------ALNAELDRAQMCSPEEM-PH 51 + RP II N +A L E Y + ++L AQ+ ++ P Sbjct: 24 VRRPEIIRNIAEAREYGDLKENAEYHAAREQQGFCEGRIQEIESKLSHAQIIDVTKLFPS 83 Query: 52 DVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWEL 111 V V +NL+ E + +V + + +S+ +P+ L+G + GD + + Sbjct: 84 GKVVFGVTVSVQNLNINEEQTYRIVGDDEANFKHNLISISSPIARGLIGKKKGDIVLIKT 143 Query: 112 PGGVATHLEVLELEY 126 P G + ++L++EY Sbjct: 144 PRGEVKY-QILKIEY 157 >UniRef50_C9RNS9 GreA/GreB family elongation factor n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RNS9_FIBSS Length = 169 Score = 86.9 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 50/117 (42%), Gaps = 5/117 (4%) Query: 14 ERIDILLEQPAYAGLPIADALNAELDR----AQMCSPEEMPHDVVTMNSRVKFRNLSDGE 69 +R + + D ELDR AQ+ + + VK + Sbjct: 54 DRSENAAYTYGRMRVREIDRRLRELDRILDGAQIVENAATKDGSIRFGATVKMIDKKTKR 113 Query: 70 VRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 ++ ++V ++ ++S+ +P+G AL G + GD++ + P G + E+LE+ Y Sbjct: 114 EKIYSIVGDKEIDPLQGRISMKSPIGEALQGKKAGDTVEVQAPRGKIVY-EILEVNY 169 >UniRef50_C7PP41 Transcription elongation factor n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PP41_CHIPD Length = 157 Score = 86.9 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 43/105 (40%), Gaps = 1/105 (0%) Query: 20 LEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPA 79 ++ L + + A++ + + V++ +V N+++ + LV Sbjct: 52 AKEAQGMHEAKVAILESAIATARIVEADSIDTSKVSILCKVTITNMANKKTVTYQLVSEK 111 Query: 80 KMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 + ++SV +P+G LLG VG+ P G + ++ + Sbjct: 112 EADLKLNKISVTSPIGKGLLGKAVGEIADVHAPNG-SLKFKIENI 155 >UniRef50_C4L6P4 GreA/GreB family elongation factor n=1 Tax=Exiguobacterium sp. AT1b RepID=C4L6P4_EXISA Length = 152 Score = 86.5 bits (213), Expect = 2e-16, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 3/106 (2%) Query: 20 LEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPA 79 + LN LD A + + +VVT +RV R + E +V A Sbjct: 49 AVRQYERIEADILELNHLLDDATIVES--VQSEVVTFGNRVVIREVQQEETERYRIVSEA 106 Query: 80 KMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 + +SV +P+G L+G +G +I E PGG +EVL +E Sbjct: 107 EADLERGSISVTSPLGRRLMGATMGQTIQVETPGGTIQ-VEVLHIE 151 >UniRef50_A8SDG2 Transcription elongation factor n=2 Tax=Clostridiales RepID=A8SDG2_9FIRM Length = 161 Score = 85.7 bits (211), Expect = 4e-16, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 40/94 (42%) Query: 33 ALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMA 92 L + A + E+ D V++ + V R + E +V + N ++S + Sbjct: 65 ELEQTIKNAVIIDESELSVDNVSVGTHVTIRETGEDEAEEYDIVGRTEADAFNGKISDES 124 Query: 93 PVGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 PVG AL+G VGD LP G VL + + Sbjct: 125 PVGHALMGKAVGDKAEVLLPTGQTVVYTVLAITH 158 >UniRef50_Q01RT9 GreA/GreB family elongation factor n=2 Tax=Acidobacteria RepID=Q01RT9_SOLUE Length = 164 Score = 85.3 bits (210), Expect = 5e-16, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 1/92 (1%) Query: 33 ALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMA 92 L + L + M ++P D + S V ++ + LV + N ++S + Sbjct: 58 QLKSRLGQLAMIDFTKIPRDKAGLGSTVVVLDVKSDQEITYHLVTSEEADAPNGKVSTTS 117 Query: 93 PVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 P+G ALLG VGD + PGGV LE+L+L Sbjct: 118 PIGRALLGKTVGDEVKVMSPGGV-KELEILKL 148 >UniRef50_C4XLU8 Transcription elongation factor greA n=11 Tax=Desulfovibrionales RepID=GREA_DESMR Length = 164 Score = 85.3 bits (210), Expect = 5e-16, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 2/100 (2%) Query: 35 NAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPV 94 + + R + + + V + V+ ++ G+V+ TL+ P + S +S+++PV Sbjct: 65 ESRMSRFNVIDLATLGGEQVIFGATVEIEDVDTGDVKKYTLLGPDEAEPSKGSISLLSPV 124 Query: 95 GAALLGLRVGDSIHWELPGGVATHLEVLELEYQ-PEAAGD 133 G ALLG VGD I + P G + E++ + + P AA D Sbjct: 125 GLALLGKFVGDEIVVDAPRG-KINYEIVSIAFHGPIAAAD 163 >UniRef50_C7GYY1 Transcription elongation factor n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GYY1_9FIRM Length = 158 Score = 84.5 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 43/91 (47%) Query: 34 LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93 L L+ ++ DVV + V +N++ + +V A+ N +S +P Sbjct: 66 LEDMLNNYEIIDSNAAKGDVVDLGLNVHLKNITKKKEETYRIVGSAEADPFNNLISNESP 125 Query: 94 VGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 +G LL +VG+++ ++P G ++L++ Sbjct: 126 IGKGLLKHKVGETVSIDIPSGKTVKYKILKI 156 >UniRef50_UPI0001C37CEA transcription elongation factor GreA n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37CEA Length = 156 Score = 84.2 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 1/92 (1%) Query: 33 ALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMA 92 L +D A++ + D + M+S++ + L G++ T+V ++S + Sbjct: 64 ELQYTIDNAEIVDDSNISVDEIGMSSKITIKRLDTGKIETFTIVSTNHANVREGKISDAS 123 Query: 93 PVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 P+G A + RVGD + P G EV+E+ Sbjct: 124 PIGKAAMKKRVGDVFIVDAPAG-ELKFEVVEI 154 >UniRef50_C0JZV3 Transcription elongation factor GreA n=1 Tax=uncultured bacterium URE4 RepID=C0JZV3_9BACT Length = 112 Score = 84.2 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 44/92 (47%), Gaps = 1/92 (1%) Query: 33 ALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMA 92 L ++ A++ ++ D V + S+V N++ +V ++ S LS Sbjct: 20 RLKEKVANARVIDESKLSADTVQLLSKVTVENMNAKMKMQFQIVGESEADFSKGLLSAST 79 Query: 93 PVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 P+G AL+G G+ + ++P G+ ++L++ Sbjct: 80 PIGKALMGHGKGEVVEAKVPSGI-MKFKILDI 110 >UniRef50_B9KZF4 Transcription elongation factor greA n=2 Tax=Thermomicrobia (class) RepID=B9KZF4_THERP Length = 156 Score = 84.2 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 3/94 (3%) Query: 32 DALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVM 91 + L RAQM + P D V + SRV + G V +V P + + ++S+ Sbjct: 66 REIEHILRRAQMIT-RAGPQDEVRLGSRVTVIDEE-GSVETWVIVSPEEANAAQGRISIE 123 Query: 92 APVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 +PVGAALLG RVG ++ PGG + +E Sbjct: 124 SPVGAALLGKRVGTTVTVRAPGG-EMRFTIQRIE 156 >UniRef50_B4RBL3 Transcription elongation factor GreA/GreB family n=1 Tax=Phenylobacterium zucineum HLK1 RepID=B4RBL3_PHEZH Length = 131 Score = 83.8 bits (206), Expect = 1e-15, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 4/115 (3%) Query: 12 DAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVR 71 D +R+ + GL + L E++R + + +++ V +NS V +++L R Sbjct: 19 DLKRLRAISLSRQAPGL-GQELLRREVERMAIRAYDDLR--FVRLNSTVTYKDLRTRRRR 75 Query: 72 VRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELP-GGVATHLEVLELE 125 + +V P ++S+++P+GAAL+GL G W G ++VL +E Sbjct: 76 IVQVVQPEHAHQDENRVSILSPIGAALIGLPEGSVFRWAERIDGATRAVKVLAVE 130 >UniRef50_Q2Z001 Transcription elongation factor n=1 Tax=uncultured candidate division OP8 bacterium RepID=Q2Z001_9BACT Length = 156 Score = 83.8 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 1/93 (1%) Query: 34 LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93 L + A + P ++ + V +RV +NL GE V LV + +S+ +P Sbjct: 65 LQGRISHAAVIDPSKLSGNRVVFGARVFLKNLDTGEPIVYRLVGEDEADIEQGSISITSP 124 Query: 94 VGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 + L+ VG+ +P G+ E++++E+ Sbjct: 125 LARGLIRREVGEQAKIAVPSGI-KSFEIVKIEF 156 >UniRef50_Q04HS9 Transcription elongation factor greA n=90 Tax=Bacilli RepID=GREA_STRP2 Length = 160 Score = 83.8 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 48/93 (51%), Gaps = 1/93 (1%) Query: 33 ALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMA 92 +L ++ A++ + + + D V + V + + + E V +V A ++S + Sbjct: 66 SLETKIRYAEIVNSDAVAQDEVAIGKTVTIQEIGEDEEEVYIIVGSAGADAFAGKVSNES 125 Query: 93 PVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 P+G AL+G + GD+ E P G + +++L++E Sbjct: 126 PIGQALIGKKTGDTATIETPVG-SYDVKILKVE 157 >UniRef50_A3HZU2 Transcription elongation factor GreB n=2 Tax=Bacteroidetes RepID=A3HZU2_9SPHI Length = 166 Score = 83.0 bits (204), Expect = 2e-15, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 1/93 (1%) Query: 34 LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93 L+ + A++ E P + + ++V + + LV + S ++S ++P Sbjct: 75 LDERIATAKIVDLSEQPKNEIRFGAKVTLKIGKSPKAMTYQLVGVDEADISKNKISFISP 134 Query: 94 VGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 + L+G +VG+ L G EV+E++Y Sbjct: 135 IAMILIGKKVGEKATLSLTKG-DRVFEVMEIKY 166 >UniRef50_A0M1N1 GreA-like transcription elongation factor n=3 Tax=Flavobacteriaceae RepID=A0M1N1_GRAFK Length = 166 Score = 83.0 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 7/125 (5%) Query: 8 INDLDAERIDILLEQPAYAGLPIA------DALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 + DL+ ER + E + + L+ L A++ ++ P D + +RVK Sbjct: 43 LKDLEYERAHVEAENDTEKRRAQSLIDGKINLLSERLQTARLLDSKDQPKDEIRFGARVK 102 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEV 121 N + G+++ +V + +++ +AP+ A+ G +VG+ I ++L G L+V Sbjct: 103 LTNETSGQLQEFQIVGVDEADIKKKKIAFVAPIAKAVTGRKVGEEIDFKL-GNEIRKLKV 161 Query: 122 LELEY 126 L + Y Sbjct: 162 LGITY 166 >UniRef50_Q1H0G6 GreA/GreB family elongation factor n=3 Tax=Proteobacteria RepID=Q1H0G6_METFK Length = 165 Score = 83.0 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 2/102 (1%) Query: 32 DALNAELDRAQMCSPEEMPH-DVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSV 90 L +D A + P + + + + V+ ++ +V ++ +S Sbjct: 65 RFLMKRMDIAVVVDPAQQQDLEKIYFGAWVELYSIDKDSEHHYRIVGQDELDPGKGYISW 124 Query: 91 MAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEYQPEAAG 132 ++P+ ALLG + GD I E P G E++++ Y P G Sbjct: 125 ISPLARALLGKQPGDVIRVETPAGEER-FEIVDVSYHPPGQG 165 >UniRef50_Q8ZJH2 Transcription elongation factor greB n=165 Tax=Proteobacteria RepID=GREB_YERPE Length = 171 Score = 83.0 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 2/98 (2%) Query: 31 ADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSV 90 L L+ ++ P+ V + V+ N + E R+ LV P + + +S+ Sbjct: 63 VRFLAKRLEVLKIVDPDPRQEGKVFFGAWVRVENEQE-EQRIFRLVGPDEFDPAKKWISI 121 Query: 91 MAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEYQP 128 +PV AL+G +V D + + P G AT+ +LE+ Y+P Sbjct: 122 DSPVARALIGKQVDDEVTVQTPNGEATYW-ILEIRYRP 158 >UniRef50_Q5SKM1 Transcription elongation factor n=5 Tax=Thermus RepID=Q5SKM1_THET8 Length = 155 Score = 82.6 bits (203), Expect = 3e-15, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 4/106 (3%) Query: 20 LEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPA 79 + + L L RA + D V + +V+ GE +V Sbjct: 52 ARRAMWQNEARIAQLEDLLSRAVIVENGSF--DQVALGCQVELE-TETGERLSLAIVGSH 108 Query: 80 KMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 + + ++S +P+G ALLG +VGD + G + +LE++ Sbjct: 109 EADIFSGKISDESPLGQALLGKKVGDVVEIRGKKGAQVY-TILEIK 153 >UniRef50_A9BFC0 Transcription elongation factor greA n=12 Tax=Thermotogaceae RepID=GREA_PETMO Length = 159 Score = 82.6 bits (203), Expect = 3e-15, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 44/88 (50%), Gaps = 1/88 (1%) Query: 38 LDRAQMCSPEEMPHD-VVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGA 96 LD A++ + V++ +VK ++ + LV P + ++S+ +P+G Sbjct: 71 LDNAEIIENGGNHDNSTVSLGKKVKIKDYRLNREQEFVLVTPQEANIEENKISIESPIGR 130 Query: 97 ALLGLRVGDSIHWELPGGVATHLEVLEL 124 +LLG + G+ I+ + G + +E+ E+ Sbjct: 131 SLLGRKKGEVINIKTARGSSKKIEIKEI 158 >UniRef50_B0P8A6 Transcription elongation factor n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P8A6_9FIRM Length = 151 Score = 82.6 bits (203), Expect = 4e-15, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 53/116 (45%), Gaps = 7/116 (6%) Query: 9 NDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDG 68 ++ D + + + + L +L ++ +++ DVV++ SRVK ++ Sbjct: 41 SEYDEAKNEQAVVEARIK------KLEDQLKHVKIIERDQISTDVVSVGSRVKILDMDYD 94 Query: 69 EVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 E V T+ + + +S +PVG L+G +VGD + P L++LE+ Sbjct: 95 EEMVYTIASSVESHNDLESISDESPVGKGLIGHKVGDVVEIHAPA-AVLKLKILEI 149 >UniRef50_D1B0C0 Transcription elongation factor n=4 Tax=Campylobacteraceae RepID=D1B0C0_SULD5 Length = 167 Score = 82.6 bits (203), Expect = 4e-15, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 52/133 (39%), Gaps = 10/133 (7%) Query: 3 RPTIIINDLDAER----IDILLE-QPAYAGLPIADALNAELD----RAQMCSPEEMPHDV 53 + + +LD R + E A L D+ AEL R+Q+ P HD Sbjct: 26 QRPETVIELDIARSHGDLKENAEYHAAKEKLAFIDSRIAELSDLVSRSQVIDPSTYEHDK 85 Query: 54 VTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPG 113 V S + NL E ++V + +S +P+ L+G V + + +LP Sbjct: 86 VRFGSTITLENLETNEEVTYSIVGSTESNPDLGLISYHSPLSKQLMGRCVDEEVMIKLPV 145 Query: 114 GVATHLEVLELEY 126 G + +L + Y Sbjct: 146 GTQEYA-ILNITY 157 >UniRef50_B9XEY1 GreA/GreB family elongation factor n=1 Tax=bacterium Ellin514 RepID=B9XEY1_9BACT Length = 170 Score = 82.2 bits (202), Expect = 4e-15, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 2/95 (2%) Query: 33 ALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMA 92 L L A++ P P + V + V R+ G +V + +S ++ Sbjct: 78 QLEQSLATAEIVPPPPQPWEQVRFGATVTVRD-ESGNETRYRIVGVDETDIDRDWVSWLS 136 Query: 93 PVGAALLGLRVGDSIHWELPGGVATHLEVLELEYQ 127 P+ AL+ R+G+ +H+ P G LE++ + Y+ Sbjct: 137 PIARALINARIGERVHFRFPAGEKQ-LEIVSITYE 170 >UniRef50_C1XQ58 Transcription elongation factor n=2 Tax=Meiothermus RepID=C1XQ58_9DEIN Length = 159 Score = 82.2 bits (202), Expect = 4e-15, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 2/108 (1%) Query: 20 LEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPA 79 + + L + L RA + V + V+ G T+V Sbjct: 54 ARRAQWDNDRRISELESILARAVVVEAGNGTPLEVGLGVSVELE-TDTGARMSLTIVGSH 112 Query: 80 KMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEYQ 127 + N ++S +P+G L+G +VGD + + P GV ++EL Y+ Sbjct: 113 EADVFNGKISNESPMGQRLMGKKVGDRVEYPSPKGV-QSYTIVELSYK 159 >UniRef50_A6H247 Transcription elongation factor greA n=33 Tax=Bacteroidetes RepID=GREA_FLAPJ Length = 158 Score = 82.2 bits (202), Expect = 5e-15, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 11/119 (9%) Query: 18 ILLEQPAYAGLPIADALNAEL---------DRAQMCSPEEMPHDVVTMNSRVKFRNLSDG 68 L E Y A L EL A++ ++ + S VK +N S+G Sbjct: 42 DLSENAEYDAAKEAQGLL-ELKIKKMEEVYSNARLIDESQLDVSKALVLSHVKIKNQSNG 100 Query: 69 EVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEYQ 127 LV ++ ++SV +P+G LLG VG+ +P G+ EVLE+ Sbjct: 101 MEMSYHLVAESEADLKTGKISVTSPIGKGLLGKSVGEIAEITVPNGI-LKFEVLEITRD 158 >UniRef50_C1F9R4 Transcription elongation factor GreA n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F9R4_ACIC5 Length = 165 Score = 81.8 bits (201), Expect = 5e-15, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 1/107 (0%) Query: 18 ILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVY 77 + +Q L + + + +PHD V S V+ + S E LV Sbjct: 44 HMAKQRQEFVNARLGQLKKRMAELSLVNLANIPHDRVAFGSTVEVFDTSKDEKIEYKLVT 103 Query: 78 PAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 + S +S +P+G AL+G +VGD+ P G LEVL+L Sbjct: 104 SEESDVSKGLISTTSPIGRALIGKQVGDTATVVTPSG-NRELEVLKL 149 >UniRef50_Q2S2N3 Transcription elongation factor n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S2N3_SALRD Length = 164 Score = 81.8 bits (201), Expect = 5e-15, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 1/92 (1%) Query: 33 ALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMA 92 + + RA++ + + S V NL G+ + TLV + S ++SV + Sbjct: 72 QIEDTIARARIVDESTVDDSKAYILSDVTVENLDTGDEQTFTLVSEEEANISENKISVDS 131 Query: 93 PVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 P+G LL GD + ++P G H ++ ++ Sbjct: 132 PIGEGLLAQEEGDEVSIDVPAGTV-HFKIKDI 162 >UniRef50_C0QME5 GreA2 n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QME5_DESAH Length = 95 Score = 81.8 bits (201), Expect = 6e-15, Method: Composition-based stats. Identities = 26/49 (53%), Positives = 35/49 (71%) Query: 88 LSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEYQPEAAGDYLL 136 +S++APVG+ALLGL +GD I W PGG + + E+ YQPE +GDY L Sbjct: 47 ISILAPVGSALLGLSIGDKIEWPKPGGGNLKVRITEIIYQPERSGDYQL 95 >UniRef50_A5V3E1 Transcription elongation factor greA n=13 Tax=Proteobacteria RepID=GREA_SPHWW Length = 158 Score = 81.8 bits (201), Expect = 6e-15, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 2/92 (2%) Query: 35 NAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPV 94 L RAQ+ P + D + + V + D + +V + ++S +P+ Sbjct: 68 EDRLSRAQVIDPSMLSGDKIVFGATVTLLD-DDEKPVRYQIVGQTEADAKTGKISYNSPL 126 Query: 95 GAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 G AL+G +V D + +P G +L V ++E+ Sbjct: 127 GRALIGKKVDDEVEVTVPSGDRFYL-VSKIEF 157 >UniRef50_A7HDS3 Transcription elongation factor GreB n=3 Tax=Myxococcales RepID=A7HDS3_ANADF Length = 169 Score = 81.8 bits (201), Expect = 7e-15, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 2/97 (2%) Query: 32 DALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVM 91 L+ +D + P PH + V + +GE R LV P + + +SV Sbjct: 71 RFLSERMDALTVVDPRPHPHGRAFFGAWVTIED-DEGEARTFRLVGPDEFDVAAGLISVE 129 Query: 92 APVGAALLGLRVGDSIHWELPGGVATHLEVLELEYQP 128 AP+G ALLG + GD++ + P G A L ++ + + P Sbjct: 130 APLGRALLGKQEGDTVLFLRPAGEA-ELTIMAVRWSP 165 >UniRef50_C8S319 GreA/GreB family elongation factor n=1 Tax=Rhodobacter sp. SW2 RepID=C8S319_9RHOB Length = 167 Score = 81.5 bits (200), Expect = 7e-15, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 54/118 (45%), Gaps = 6/118 (5%) Query: 14 ERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVR 73 ER+D L E A + L A L A P P V +RV+ L+DG +V Sbjct: 55 ERLDKLPEAAAERDIRY---LEARLRSAIPVDPSSQPAGEVAFGARVEVA-LADGSRQVW 110 Query: 74 TLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEY-QPEA 130 + + + +++ +P+ ALLG VGD + W P G LEVL + Y P+A Sbjct: 111 QITGEDEADATQNRIAPQSPLARALLGAEVGDLVIWRKPSG-PVELEVLAIAYADPQA 167 >UniRef50_Q03RN4 Transcription elongation factor n=1 Tax=Lactobacillus brevis ATCC 367 RepID=Q03RN4_LACBA Length = 132 Score = 81.1 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 2/90 (2%) Query: 35 NAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPV 94 L AQ+ ++ D +T+ +V F+ D E T+V A+ + ++S +P+ Sbjct: 44 ERMLQYAQIIDNDDTDKDEITVGKKVTFQ-EDDDEPEEYTIVGAAEADPMSGKISNDSPI 102 Query: 95 GAALLGLRVGDSIHWELPGGVATHLEVLEL 124 LLG RVG+++ + PGG ++V+ + Sbjct: 103 AKGLLGHRVGETVTFPTPGG-DMTVKVIAV 131 >UniRef50_B4UCU9 Transcription elongation factor greA n=588 Tax=Bacteria RepID=GREA_ANASK Length = 166 Score = 81.1 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 39/94 (41%), Gaps = 1/94 (1%) Query: 33 ALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMA 92 + + A++ + D V + V + G+ +V + ++SV + Sbjct: 64 QVEHWIASAEVIDVTKHAGDRVVFGATVSLEDAESGDQVTYRIVGELEADLKQGKISVTS 123 Query: 93 PVGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 P+ AL+G GD++ PGG + E+ + + Sbjct: 124 PIARALIGRSEGDTVVVRSPGGEKEY-EIQSVAF 156 >UniRef50_Q1AU03 Transcription elongation factor n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AU03_RUBXD Length = 154 Score = 80.3 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 2/94 (2%) Query: 33 ALNAELDRAQMCSP-EEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVM 91 L L A++ P V + +RV R + DG R +V + ++ +LS Sbjct: 59 ELQRRLRNAKIVDPASSAEEGAVDLGTRVTLRVVGDGRERTFQIVGANEADPASGKLSHA 118 Query: 92 APVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 +PVG ALL RVG+ + P G + E++ +E Sbjct: 119 SPVGKALLRRRVGEKVRVSTPRGATEY-EIVSVE 151 >UniRef50_D2RL35 GreA/GreB family elongation factor n=3 Tax=Veillonellaceae RepID=D2RL35_ACIFE Length = 172 Score = 80.3 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 43/93 (46%), Gaps = 3/93 (3%) Query: 34 LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNT--QLSVM 91 L + AQ+ ++ +VV++ +VK ++ + T+V + ++S Sbjct: 66 LENMIRNAQIIKDTDITKNVVSLGCKVKIEDMETHDQEEYTVVGTTEADPMAEPPRISNE 125 Query: 92 APVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 +PVG A+LG +VG + P G +++ + Sbjct: 126 SPVGKAILGQKVGAVVKVTTPIG-ELDYKIVAV 157 >UniRef50_Q0BR49 Transcription elongation factor greB n=4 Tax=cellular organisms RepID=Q0BR49_GRABC Length = 169 Score = 80.3 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 3/99 (3%) Query: 31 ADALNAELDRAQMCSPEEMPH-DVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLS 89 L L+ A + P PH D + + V + N +D V+ T+V + + ++S Sbjct: 71 VRFLTKRLENAVVIDPATQPHKDRIYFGATVTYINAADETVQ-VTIVGADEADMALGRIS 129 Query: 90 VMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEYQP 128 +++PV ALLG GD + P L++L+++Y+P Sbjct: 130 LLSPVAKALLGASKGDEVTVITPVKTEI-LDILDVDYRP 167 >UniRef50_A6SZ83 Transcription elongation factor, greA family n=2 Tax=Oxalobacteraceae RepID=A6SZ83_JANMA Length = 139 Score = 79.9 bits (196), Expect = 2e-14, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 49/121 (40%), Gaps = 3/121 (2%) Query: 7 IINDLDAERIDILLEQPAYAG---LPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFR 63 + DA + + E G + + L + + + + VT+ S V + Sbjct: 6 YLTQNDAATLSRIAEHLLRMGEVEINAGEQLIDIISTSIILPVDVQRKGYVTLYSTVSYS 65 Query: 64 NLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLE 123 + EVR T+V P +S + P+G AL+G + ++ LP L++L+ Sbjct: 66 PVDTEEVRKLTIVCPQDANPQLALISALTPIGLALIGRKALTTVEVALPSKRVEKLKILD 125 Query: 124 L 124 + Sbjct: 126 V 126 >UniRef50_Q1PYP5 Transcription elongation factor n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYP5_9BACT Length = 741 Score = 79.9 bits (196), Expect = 2e-14, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 43/95 (45%), Gaps = 2/95 (2%) Query: 31 ADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSV 90 A+ L A+L + P + ++V+ ++V +N TL+ P +S Sbjct: 645 AERLKADLQKIVFIEPYTVKTNIVSPGTKVTIKNKDKETTETYTLLGPWDADIDKNIISY 704 Query: 91 MAPVGAALLGLRVGDSIHWELPGGVAT--HLEVLE 123 ++P+G LL + G+++ +LP +++ + Sbjct: 705 LSPIGKGLLNKKTGETVTIQLPENEIVCDIIKIEK 739 >UniRef50_B1I1G7 GreA/GreB family elongation factor n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I1G7_DESAP Length = 154 Score = 79.5 bits (195), Expect = 3e-14, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 43/99 (43%), Gaps = 1/99 (1%) Query: 28 LPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQ 87 + + L RA++ + P + + ++ +L G + +V P ++ + Sbjct: 54 DDYLNRVRELLARARVVEGQCPPLPLTLIGCDIRVEDLDRGHSEMFRVVSPYEINPAAGH 113 Query: 88 LSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 +S ++PVG LL G + + PGG + V+ + Y Sbjct: 114 VSFLSPVGRGLLLKEPGQVLAVQAPGGTFRY-RVVSVTY 151 >UniRef50_Q1J0L4 Transcription elongation factor n=3 Tax=Deinococcus RepID=Q1J0L4_DEIGD Length = 156 Score = 79.5 bits (195), Expect = 3e-14, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 6/122 (4%) Query: 8 INDLDAERIDILLEQPAYAGLPIAD--ALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNL 65 I D D E A L +L+RAQ+ + + ++VK R+ Sbjct: 39 IADGDLRESAAYDEARMQQSENEARILELEDQLERAQIIEEDA--SGGAGLGAKVKVRDE 96 Query: 66 SDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 G R LV ++ ++S +P+G AL G R G + +LP G + EVLE+ Sbjct: 97 K-GNERQFELVGTYEVDVLKGKISDASPIGQALSGKRPGQIVTVQLPKG-SAKFEVLEVT 154 Query: 126 YQ 127 Y Sbjct: 155 YD 156 >UniRef50_Q2GD99 Transcription elongation factor greA n=2 Tax=Neorickettsia RepID=GREA_NEOSM Length = 159 Score = 79.1 bits (194), Expect = 3e-14, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 52/132 (39%), Gaps = 9/132 (6%) Query: 3 RPTIIINDLDAERIDILLEQPAYAGLPI--------ADALNAELDRAQMCSPEEMPHDVV 54 +P+++ A + L E Y L L A++ + + V Sbjct: 26 KPSVVAAVAQARELGDLSENAEYHEARKEQSFVEGKIRELQLCLSEAEVIDVSQFTGERV 85 Query: 55 TMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGG 114 + V N+ V + +V + ++SV +P+G A++ VG+ + +LP G Sbjct: 86 KFGASVTLENMESKSVLIYQIVGNLESDIKEGKISVSSPIGKAVMNKEVGEIVEIDLPSG 145 Query: 115 VATHLEVLELEY 126 ++L +E+ Sbjct: 146 -KKTYKILGVEF 156 >UniRef50_Q848L1 GreA n=1 Tax=uncultured bacterium RepID=Q848L1_9BACT Length = 597 Score = 79.1 bits (194), Expect = 4e-14, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 46/123 (37%), Gaps = 11/123 (8%) Query: 13 AERIDILLEQPAYAGLPIADA--LNAELDR-------AQMCSPEEMPHDVVTMNSRVKFR 63 +R D LL P ++ L EL + A + P D V + V Sbjct: 476 VQRRDELLASPDDDLPERSELATLERELAQVSAVLQGAIVIRLASPPRDEVRFGAEVVVE 535 Query: 64 NLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLE 123 + G LV + ++ +P+G AL G R+G + W P G ++ V E Sbjct: 536 D-DRGSRSRFQLVGENEAAPERGLVNWFSPLGRALAGARLGQRVEWTTPAGRGAYV-VRE 593 Query: 124 LEY 126 + Y Sbjct: 594 ISY 596 >UniRef50_Q096W9 Transcription elongation factor GreB n=1 Tax=Stigmatella aurantiaca DW4/3-1 RepID=Q096W9_STIAU Length = 144 Score = 78.8 bits (193), Expect = 5e-14, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 3/96 (3%) Query: 32 DALNAELDRAQMCSP-EEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSV 90 L LD A + +P E+ V + V + G +V ++ ++SV Sbjct: 50 RFLQKRLDTATIVTPAEQTDQGRVYFGATVTLEDED-GVQTTYQIVGSDEIDTQGGRISV 108 Query: 91 MAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 +P+G ALL VGDS+ P G L ++ + Y Sbjct: 109 ESPIGKALLRKAVGDSVEVMRPRG-EIELTIVAIAY 143 >UniRef50_B5Y9H5 Transcription elongation factor n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y9H5_COPPD Length = 163 Score = 78.8 bits (193), Expect = 5e-14, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 9/118 (7%) Query: 16 IDILLEQPAYAGLPIADALNAE----LD----RAQMCSPEEMPHDVVTMNSRVKFRNLSD 67 + L E + AL E L+ A++ E++ D V++ ++V + S Sbjct: 43 LGDLSENSEFEAAKEEQALLEERIARLETLVYNARVVKAEDLALDQVSVGTKVLVLDESA 102 Query: 68 GEVRVRTLVY-PAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 G +V ++ + ++S +P+G+ LLG + GD + +L G E+L++ Sbjct: 103 GREESFIIVGNSEEVDPFSGKISSKSPLGSRLLGRKRGDRVEIKLRNGSKAVYEILDI 160 >UniRef50_A5D4X0 Putative uncharacterized protein n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D4X0_PELTS Length = 150 Score = 78.8 bits (193), Expect = 6e-14, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 1/97 (1%) Query: 29 PIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQL 88 L+ + A + VT+ S V+ +NLS+ EV +V P + Sbjct: 49 NYIQRLDRLIRNASKSKIADNKVPFVTIGSEVEIQNLSEQEVYKYFIVNPFYSEVREGHI 108 Query: 89 SVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 S ++PVG +LL +VGD + + PGGV + ++ + Sbjct: 109 SFLSPVGKSLLLKKVGDEVEVKAPGGVFRY-KIKSIR 144 >UniRef50_Q4K5S3 Transcription elongation factor GreB n=3 Tax=Pseudomonas RepID=Q4K5S3_PSEF5 Length = 197 Score = 78.0 bits (191), Expect = 8e-14, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 11/116 (9%) Query: 10 DLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGE 69 D D +R+ L Y L AQ+ + D V + SRV F + D + Sbjct: 91 DADKQRMAELERDLRYFTQR--------LHSAQVVTTAN-STDKVQIGSRVTFADEQDRQ 141 Query: 70 VRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 LV + + ++ +P+G ALLG + GD + W+ P G +E++ +E Sbjct: 142 Q-SVQLVGEDQADAAKGLINWASPLGRALLGAQPGDEVLWQRPAGNQL-IEIIRIE 195 >UniRef50_C7N7T1 Transcription elongation factor n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N7T1_SLAHD Length = 155 Score = 78.0 bits (191), Expect = 8e-14, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 3/89 (3%) Query: 38 LDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAA 97 L A + + + VT+ S V G RV T+V A+ + ++S +PVG+ Sbjct: 70 LANATVVEAPK-RSNRVTVGSTVTV--DMGGRERVFTIVGGAEANAAEGKISNDSPVGSV 126 Query: 98 LLGLRVGDSIHWELPGGVATHLEVLELEY 126 LLG + GD + E P G + VL +E+ Sbjct: 127 LLGSKKGDQLTTEGPTGRKIEITVLNIEH 155 >UniRef50_Q88DU7 Transcription elongation factor greA n=83 Tax=Proteobacteria RepID=GREA_PSEPK Length = 160 Score = 77.6 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 2/93 (2%) Query: 35 NAELDRAQMCSPEEMPHD-VVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93 L + + +PH V + V N E +V + +LS AP Sbjct: 68 EGRLQNSVVIDVTTIPHTGKVIFGTTVVLANTETDEEVTYQIVGEDEADVKQGKLSSGAP 127 Query: 94 VGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 + A++G GD++ + P G + E++E+++ Sbjct: 128 IARAIIGKEEGDTVVVKTPSGTVEY-EIVEVKH 159 >UniRef50_B2V1C0 Transcription elongation factor n=28 Tax=Clostridium RepID=B2V1C0_CLOBA Length = 155 Score = 77.2 bits (189), Expect = 1e-13, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 47/93 (50%), Gaps = 1/93 (1%) Query: 34 LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93 L + A + E+ + +NS+ + + + D + V TLV + N +S+ + Sbjct: 64 LMTMISTATVIDDTEIDKSSLGINSKARIKFVEDDDEDVITLVTTMDLDPENMLISIESD 123 Query: 94 VGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 +G AL+G + G+++ E P G +++LE+ Y Sbjct: 124 LGKALMGKKAGETVEVEAP-GAKYTVKILEILY 155 >UniRef50_B1H062 Transcription elongation factor n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1H062_UNCTG Length = 158 Score = 77.2 bits (189), Expect = 2e-13, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 45/96 (46%), Gaps = 3/96 (3%) Query: 33 ALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMA 92 L +++ A++ + + D V + V ++ G +V + ++S+ + Sbjct: 63 ELTSKIACAKIIEEQNIDSDKVFIGVTVTIKDEY-GADYQYAIVDLEEADPVANRISIQS 121 Query: 93 PVGAALLGLRVGDSIHWELPGGVATHLEVLEL-EYQ 127 P+ LLG G+++ ELP G T ++L++ YQ Sbjct: 122 PLAQGLLGHTAGETVAVELPAG-KTKFKILKISRYQ 156 >UniRef50_D0WJ76 Transcription elongation factor n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WJ76_9ACTN Length = 161 Score = 77.2 bits (189), Expect = 2e-13, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 3/89 (3%) Query: 38 LDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAA 97 L A + + + V + S V G RV T+V A+ S+ ++S +PVGAA Sbjct: 76 LSNAVLVEAPK-RSNRVNIGSTVTV--DMGGRERVFTIVGAAEADVSSGKISNESPVGAA 132 Query: 98 LLGLRVGDSIHWELPGGVATHLEVLELEY 126 LLG + GD E P G ++++++E+ Sbjct: 133 LLGGKKGDHFTAEGPTGRVIEMDIVKIEH 161 >UniRef50_Q1CX76 Transcription elongation factor, GreA/GreB family n=2 Tax=Cystobacterineae RepID=Q1CX76_MYXXD Length = 167 Score = 76.8 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 2/94 (2%) Query: 33 ALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMA 92 L A L+ ++ P+ V + V+ + G VR +V P + +LSV + Sbjct: 73 ELAAVLEDVRVVEPDASQAGRVFFGAWVELEDEDGGPVR-YRIVGPDESDVKAGRLSVES 131 Query: 93 PVGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 P+ ALLG VG+S+ + P G + V ++Y Sbjct: 132 PLARALLGKEVGESVVVDRPRGPVEY-TVTAVDY 164 >UniRef50_B2KBD2 GreA/GreB family elongation factor n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KBD2_ELUMP Length = 156 Score = 76.8 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 1/94 (1%) Query: 34 LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93 L +L AQ+ ++ + + V ++S TLV + LSV +P Sbjct: 64 LEQKLRNAQITDDIQVDKSEARIGATVTVHDISADIDFTYTLVGSMESNPEKGLLSVQSP 123 Query: 94 VGAALLGLRVGDSIHWELPGGVATHLEVLELEYQ 127 + ++LG + G+ LP G + ++++LEY+ Sbjct: 124 LAVSILGKKEGEEFEAVLPKGKKMY-KLVKLEYK 156 >UniRef50_Q4A759 Transcription elongation factor greA n=4 Tax=Mycoplasma RepID=GREA_MYCH7 Length = 160 Score = 76.8 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 43/93 (46%), Gaps = 3/93 (3%) Query: 32 DALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVM 91 L + +A++ ++ V++ S+V N+ GE++ +V +++S Sbjct: 68 RELETIISKAKIIKA-DLGSSRVSIGSKVSLENVESGEIQTFQIVSSIDADPFKSKISNF 126 Query: 92 APVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 +P+ ALLG GD + ++ + +LE+ Sbjct: 127 SPIAQALLGQHQGDEVEVDV--NEKYSVRILEV 157 >UniRef50_B9L0L0 Transcription elongation factor greA n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=GREA_THERP Length = 156 Score = 76.1 bits (186), Expect = 3e-13, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 4/95 (4%) Query: 32 DALNAELDRAQMCS-PEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSV 90 + L R ++ P + VV + S V DGE+ T+V + S ++S Sbjct: 65 REIEELLKRVELIEQPTDGDRSVVRVGSTVTIEI--DGEIETYTIVGAIEAKPSAGRISN 122 Query: 91 MAPVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 +PVG ALLG R G+ + E P G ++E++ Sbjct: 123 ESPVGRALLGHRAGEIVPIETPNGTLM-ARIIEVQ 156 >UniRef50_C4Z9L9 Transcription elongation factor n=3 Tax=Firmicutes RepID=C4Z9L9_EUBR3 Length = 185 Score = 76.1 bits (186), Expect = 4e-13, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 1/98 (1%) Query: 32 DALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVM 91 + + L A++ EE+ D +++ +++ + E +V + ++S Sbjct: 88 EEIEKILKNAEVVVEEEVDLDKISIGCKIRILDCEFDEELEYKIVGSTEANSLKGKISNE 147 Query: 92 APVGAALLGLRVGDSIHWELPGGVATHLEVLELEYQPE 129 +PVG ALLG +VGD++ E G +VLE++ E Sbjct: 148 SPVGKALLGKKVGDTVTVETQVG-ELTYKVLEIQRAEE 184 >UniRef50_A2RGA4 Transcription elongation factor greA n=111 Tax=Firmicutes RepID=GREA_STRPG Length = 160 Score = 75.7 bits (185), Expect = 4e-13, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 41/92 (44%), Gaps = 1/92 (1%) Query: 34 LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93 L ++ A++ + + D V + V + + + +V A + ++S +P Sbjct: 67 LETKIRYAEIIDSDAVAKDEVAIGKTVIVQEVGTTDKDTYHIVGAAGADIFSGKISNESP 126 Query: 94 VGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 + AL+G + GD + E P +E++ +E Sbjct: 127 IAQALIGKKTGDKVRIESPA-ATYDVEIISVE 157 >UniRef50_Q5SJG6 Anti-cleavage anti-GreA transcription factor Gfh1 n=6 Tax=Thermaceae RepID=Q5SJG6_THET8 Length = 156 Score = 75.7 bits (185), Expect = 4e-13, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 6/118 (5%) Query: 10 DLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGE 69 D D ++ +Q D+L L RA + +V+ + S V+ + GE Sbjct: 42 DYDDSGLEA-AKQEKARIEARIDSLEDILSRAVILEEG--SGEVIGLGSVVELEDPLSGE 98 Query: 70 VRVRTLVYPAKMTDSNT--QLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 +V PA+ +T ++S +P+G ALLG RVGD + + P G V+ + Sbjct: 99 RLSVQVVSPAEANVLDTPMKISDASPMGKALLGHRVGDVLSLDTPKGR-REFRVVAIH 155 >UniRef50_B2S1W7 Transcription elongation factor greA n=6 Tax=Treponema RepID=GREA_TREPS Length = 162 Score = 75.7 bits (185), Expect = 5e-13, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 46/96 (47%), Gaps = 1/96 (1%) Query: 29 PIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQL 88 + L E++RAQ+ P + V+ + + +N + GE T++ P + + Sbjct: 63 NMVTRLQEEIERAQVFDPTTVVAGRVSFGTVISLKNHTSGEDETYTILGPWESAPERGII 122 Query: 89 SVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 S M+P+G+ LL + G+ + + + G E+L + Sbjct: 123 SYMSPLGSNLLNRKTGEQLAFTV-GEHEKVYEILSI 157 >UniRef50_D1C6T4 Transcription elongation factor n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C6T4_SPHTD Length = 157 Score = 75.7 bits (185), Expect = 5e-13, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 4/95 (4%) Query: 32 DALNAELDRAQMCSPEEM-PHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSV 90 + L RA++ VV + S V DG T+V + + ++S Sbjct: 65 REIEDILRRAEVIDEAPNGDARVVRLGSTVTIEI--DGAQETYTIVGAVEAKPAAGRISN 122 Query: 91 MAPVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 +P G ALLG R G+ + + P H ++ +E Sbjct: 123 ESPFGRALLGHREGEEVEIQTPA-AVLHARIVNVE 156 >UniRef50_C6X3W9 Transcription elongation factor GreB n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6X3W9_FLAB3 Length = 183 Score = 75.7 bits (185), Expect = 5e-13, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 1/93 (1%) Query: 34 LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93 LN + A++ + V + V F+NL++ + LV + S +L+ P Sbjct: 92 LNGRMASAKIIDTARLSQGEVHFGATVTFKNLNNNLRQTFQLVGVDEANISKGKLAFTTP 151 Query: 94 VGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 + AL+ +VG+ + +L E+L + Y Sbjct: 152 LAKALINSKVGEKVTLQLGDKTNI-FEILSIGY 183 >UniRef50_D1CDC6 Transcription elongation factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CDC6_THET1 Length = 159 Score = 75.3 bits (184), Expect = 6e-13, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 6/96 (6%) Query: 33 ALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNT---QLS 89 L L A++ P V + S+V +G T+V A+ ++S Sbjct: 67 ELEKLLANAEVIDRSAQPAGTVGLGSKVTVE--ENGRTYTYTIVDGAEAGRGRDGEVRIS 124 Query: 90 VMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 + VG+ALLG RVGDS+ E+P G ++L +E Sbjct: 125 SKSAVGSALLGRRVGDSVEVEVPAG-KLTFKILSVE 159 >UniRef50_D0J5N8 Kelongation factor GreB n=4 Tax=Proteobacteria RepID=D0J5N8_COMTE Length = 231 Score = 75.3 bits (184), Expect = 6e-13, Method: Composition-based stats. Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 4/99 (4%) Query: 32 DALNAELDRAQMCSPE-EMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSV 90 L L+ A++ P D V + V + + +G R T++ + + Q+S Sbjct: 131 RFLTKRLEIAEVVDPAVHAGSDQVFFGATVSYVD-DEGVERTITIMGIDEADSAQNQVSW 189 Query: 91 MAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEY-QP 128 +APV ALL RVGD + P GV LE+L++ Y QP Sbjct: 190 IAPVSRALLKARVGDEVALPTPAGV-RMLEILDVSYPQP 227 >UniRef50_D2QK34 GreA/GreB family elongation factor n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QK34_9SPHI Length = 171 Score = 75.3 bits (184), Expect = 6e-13, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 2/95 (2%) Query: 33 ALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGE-VRVRTLVYPAKMTDSNTQLSVM 91 ALN + A++ + ++ P D V + V + S G+ + T+V + + +++ Sbjct: 76 ALNQRIATAKVVNMQDHPLDEVRFGATVTLSSQSTGKADQQLTIVGVDEADAIHGRIAFP 135 Query: 92 APVGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 AP+ LLG +VGD I P G LE+ + Y Sbjct: 136 APIARLLLGKKVGDFITLRTPRGENA-LEITSIYY 169 >UniRef50_A6NPJ1 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NPJ1_9BACE Length = 197 Score = 74.9 bits (183), Expect = 7e-13, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 1/106 (0%) Query: 20 LEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPA 79 +Q L + A + S + P D V + +V D E +V Sbjct: 80 AKQEKNRNESRIRFLENMIRTAVVISDQAAP-DTVGLYDKVTVYLEEDDETETYQVVTTM 138 Query: 80 KMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 + + ++S +PVG+ALLG RVGD I+ ++ ++ + +E Sbjct: 139 RQDALHGRISKESPVGSALLGKRVGDRIYIQVNDNYGYYVVIKAIE 184 >UniRef50_B4UMG4 GreA/GreB family elongation factor n=4 Tax=Anaeromyxobacter RepID=B4UMG4_ANASK Length = 169 Score = 74.9 bits (183), Expect = 8e-13, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 48/117 (41%), Gaps = 5/117 (4%) Query: 12 DAERIDILLEQPAYAGLPIAD--ALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGE 69 DA R+ E+PA G A AL+A L + PE P V + V G Sbjct: 52 DAARLPD-AERPARLGELDARIAALDATLGALTVLGPEATPEGQVGFGTWVTVEEED-GR 109 Query: 70 VRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 LV P + +S +PV ALLG R GD + PGG A L V+ + Sbjct: 110 RVTWRLVGPDEADARRGLISAGSPVARALLGRRAGDVVEVNRPGGEA-ELTVVAVRR 165 >UniRef50_Q9HZY5 Transcription elongation factor greB n=13 Tax=Gammaproteobacteria RepID=GREB_PSEAE Length = 168 Score = 74.5 bits (182), Expect = 9e-13, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 2/98 (2%) Query: 31 ADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSV 90 L L+ ++ + V + V + GE +V P ++ N Q+S+ Sbjct: 71 VRFLRKRLENLKVVGERPADPNRVYFGAWVTLEDED-GEQARYRIVGPDELDLRNNQISI 129 Query: 91 MAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEYQP 128 +P+ AL+G + + P G V+E+EY P Sbjct: 130 DSPLARALVGKELDAEVLVRTPAGEKLWF-VVEIEYPP 166 >UniRef50_Q88Q22 Transcription elongation factor, putative n=11 Tax=Pseudomonas RepID=Q88Q22_PSEPK Length = 165 Score = 74.5 bits (182), Expect = 9e-13, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 3/86 (3%) Query: 40 RAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALL 99 AQ+ H V + SRV+F + + + +V LV + + ++ +P+G ALL Sbjct: 80 SAQVVPAAT-SHSKVQIGSRVRFVD-AQDQEQVVQLVGEDEADAGHGLINWGSPLGRALL 137 Query: 100 GLRVGDSIHWELPGGVATHLEVLELE 125 G GD + W P G +EV+E+ Sbjct: 138 GAGPGDEVVWRRPVGEQV-IEVVEIL 162 >UniRef50_UPI0001746B72 nucleoside diphosphate kinase regulator protein, putative n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001746B72 Length = 137 Score = 73.0 bits (178), Expect = 2e-12, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 7/126 (5%) Query: 8 INDLDAERIDILLEQPAYAGLPIADA---LNAELDRAQMC-SPEEMPHDVVTMNSRVKFR 63 I+ D + L+ A L L A++ + V + + V+ Sbjct: 9 ISQSDLHTLRTFLDHDDAFNPLDARERSLLIERLQDAKVFEDESDDEPSVAGLQTLVRVE 68 Query: 64 NLSD--GEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEV 121 +LS + TLV P + + Q+S+++P+GAA+ G G + + P G L V Sbjct: 69 DLSTSPPDQFDFTLVLPHEANFEDDQISILSPLGAAVFGRSAGTQVVMDSPTGT-RRLLV 127 Query: 122 LELEYQ 127 L + + Sbjct: 128 LAVFRK 133 >UniRef50_A6NZ08 Transcription elongation factor n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NZ08_9BACE Length = 157 Score = 73.0 bits (178), Expect = 2e-12, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 1/87 (1%) Query: 38 LDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAA 97 L+ + E V + S++K ++ E +V + N ++S +P G A Sbjct: 70 LENCVVIEEEIHDGKTVRLGSKLKVLDVEFNEELDYEVVGSQEADPMNGRISEDSPFGRA 129 Query: 98 LLGLRVGDSIHWELPGGVATHLEVLEL 124 LLG VG+ + E P G A H +VL + Sbjct: 130 LLGKSVGEDVVVEAPAG-ALHYKVLSI 155 >UniRef50_B5ZLJ0 Transcription elongation factor GreB n=5 Tax=Proteobacteria RepID=B5ZLJ0_GLUDA Length = 180 Score = 73.0 bits (178), Expect = 2e-12, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 3/102 (2%) Query: 31 ADALNAELDRAQMCSPE-EMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLS 89 L +++A + P + D V + V + D R +V + + Q+S Sbjct: 79 VRFLTRRIEKAIVVDPAAQTRRDRVFFGATVTYVTEDD-TERTVVIVGVDESDLAAGQVS 137 Query: 90 VMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEYQPEAA 131 + +PV ALLG RVGD + P G +E+L + Y A Sbjct: 138 LASPVARALLGGRVGDEVRLLTPAGAEM-IEILRIAYPAPAE 178 >UniRef50_Q98Q16 Transcription elongation factor greA n=3 Tax=Mycoplasma RepID=GREA_MYCPU Length = 157 Score = 73.0 bits (178), Expect = 3e-12, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 10/116 (8%) Query: 9 NDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDG 68 + DA R E+ I + L L A D + + S V+ N S G Sbjct: 49 AEYDAAR-----EKQGQIEDRITE-LENILSNAISIQESH--SDKIGLGSVVRILNQSTG 100 Query: 69 EVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 + R +V + ++S +P+ +++G GD + + P ++L + Sbjct: 101 KERTFKIVGSFDTDPTQNKISYESPLAKSIIGFSKGDVVEIDAPD--KYTTKILSV 154 >UniRef50_B9XT30 GreA/GreB family elongation factor n=1 Tax=bacterium Ellin514 RepID=B9XT30_9BACT Length = 606 Score = 73.0 bits (178), Expect = 3e-12, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 40/92 (43%), Gaps = 1/92 (1%) Query: 33 ALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMA 92 L +EL RA+ D V++ + VK +L+ + ++ +S +A Sbjct: 510 ELESELVRARGTDYLNPKTDAVSIGTIVKVTDLNSSHIEHFNILGAWDSDPEKNVISYLA 569 Query: 93 PVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 P+ +LL + G+ + +E+ G + E+ Sbjct: 570 PLAQSLLNRKPGEEVDYEM-DGQKRRFRIDEI 600 >UniRef50_A4E9C2 Transcription elongation factor n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9C2_9ACTN Length = 156 Score = 72.6 bits (177), Expect = 4e-12, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 9/118 (7%) Query: 9 NDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDG 68 ++ DA + ++ A IA+ + A L AQ+ V++ S V + +G Sbjct: 48 SEYDAAK-----DKQAQNAARIAE-IQAILANAQV--AATTGDLTVSIGSTVSLID-PNG 98 Query: 69 EVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 EV TLV + ++S +PVG A++G GDS+ P G + ++ Sbjct: 99 EVMEVTLVGTTETNSLEHKISNESPVGHAIIGHGEGDSVEVVTPSGKTRVYTIAKIAR 156 >UniRef50_Q8P7P8 Transcription elongation factor greB n=53 Tax=Proteobacteria RepID=GREB_XANCP Length = 168 Score = 72.2 bits (176), Expect = 5e-12, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 1/93 (1%) Query: 34 LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93 L+ L+ ++ V ++V+ + GE+ +V P + +S+ +P Sbjct: 74 LSKRLEALRVVDTAPTDPQAVFFGAQVELEDADSGELLRYRIVGPDETDAGRGWISIDSP 133 Query: 94 VGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 + ALL RV D +LP G V+ +EY Sbjct: 134 LARALLKKRVDDEFEAQLPSG-KHTFVVVVVEY 165 >UniRef50_A6W1U9 Transcription elongation factor GreB n=17 Tax=Gammaproteobacteria RepID=A6W1U9_MARMS Length = 196 Score = 72.2 bits (176), Expect = 5e-12, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 2/93 (2%) Query: 34 LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93 L L+ + + V + V + + G ++ +V P ++ ++ +S+ +P Sbjct: 101 LEKRLEVCTVVDRFPSDQERVFFGAWVTLEDEA-GNLKEYRIVGPDELDHHSSYISIDSP 159 Query: 94 VGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 V ALL + GD + L GG T++ + +EY Sbjct: 160 VARALLKKQEGDEVVIRLAGGEKTYI-IDAVEY 191 >UniRef50_Q2Y7V5 GreA/GreB family elongation factor n=33 Tax=cellular organisms RepID=Q2Y7V5_NITMU Length = 213 Score = 71.8 bits (175), Expect = 5e-12, Method: Composition-based stats. Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 6/99 (6%) Query: 32 DALNAELDRAQMCSPEEMPHD---VVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQL 88 L LD A++ P MP + + + V + N GE ++ ++V ++ + + Sbjct: 91 RFLTRRLDMAEIIDPS-MPREDESRIFFGATVTYINEK-GEEKIVSIVGVNEIDTTRGYI 148 Query: 89 SVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEYQ 127 S ++P+ LL R GD + PGG LE+LE+ YQ Sbjct: 149 SWVSPLARTLLKAREGDVVTLHAPGGTE-ELEILEVRYQ 186 >UniRef50_A0LES5 GreA/GreB family elongation factor n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LES5_SYNFM Length = 155 Score = 71.8 bits (175), Expect = 6e-12, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 1/91 (1%) Query: 34 LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93 L +L ++ + + V +N+ GE + LV P + + +LS+ +P Sbjct: 64 LERKLASCEIVVGRKFFFKQAEFGTIVVIQNIETGETQRYQLVGPYESNVVDGKLSIDSP 123 Query: 94 VGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 VG L+G R G+ + P GV V+ + Sbjct: 124 VGRHLVGRREGEEVLVYTPAGV-RMYRVVSI 153 >UniRef50_A6X2G5 GreA/GreB family elongation factor n=2 Tax=Ochrobactrum RepID=A6X2G5_OCHA4 Length = 156 Score = 71.4 bits (174), Expect = 7e-12, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 11/126 (8%) Query: 6 IIINDLDAERIDI-LLEQPAYAGLPIADALNAEL-------DRAQMCSPEEMP-HDVVTM 56 + + + + R+ L + ++ +L + A++ P +P DVV Sbjct: 33 LTMIEDEIARLQRELADANVAGERSAIARISRDLRYWTTRRENAELSVP--VPDSDVVRF 90 Query: 57 NSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVA 116 V+ NL DG+VR T+V + SN ++S +APV L G VGD + Sbjct: 91 GMTVELENLDDGKVRRWTIVGEDEADPSNGKISHVAPVAILLFGKPVGDVVKINNVEWEI 150 Query: 117 THLEVL 122 L+++ Sbjct: 151 VSLKIV 156 >UniRef50_Q1QUF3 GreA/GreB family elongation factor n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QUF3_CHRSD Length = 178 Score = 71.4 bits (174), Expect = 8e-12, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 6/99 (6%) Query: 34 LNAELDRAQMCSPEEMPHDV--VTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVM 91 L LD Q+ +P D V + V + DGE +V + +SV Sbjct: 84 LGKRLDELQVVD--RLPADTSRVYFGAYVTLED-DDGEEMTIRIVGHDETDTDKRWISVD 140 Query: 92 APVGAALLGLRVGDSIHWELPGGVATHLEVLELEYQPEA 130 AP+ A+LG + + + PGG T++ + ++ Y PEA Sbjct: 141 APLAQAMLGKGLDEDVTVNAPGGDTTYI-ITDIAYDPEA 178 >UniRef50_B3DVF3 Transcription elongation factor GreA fused to uncharacterized associated domain n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DVF3_METI4 Length = 614 Score = 71.4 bits (174), Expect = 9e-12, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 38/92 (41%) Query: 33 ALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMA 92 L + + RA+ + V + + V + +L ++ S +S +A Sbjct: 513 ELESMISRARATDFSNVDTTTVNIGTVVSYTDLKTNRTNSVAILGAWDSNPSKGIISYLA 572 Query: 93 PVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 G +LLG + GD + L G+ T + + ++ Sbjct: 573 AFGQSLLGHKTGDVLQVSLEDGITTEIRIDKI 604 >UniRef50_B4D5K0 GreA/GreB family elongation factor n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D5K0_9BACT Length = 169 Score = 71.1 bits (173), Expect = 9e-12, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 43/93 (46%), Gaps = 2/93 (2%) Query: 33 ALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMA 92 AL+ L A++ + E D V V R+ + G +V ++ +S ++ Sbjct: 76 ALSQRLADAEVIAISESRGDEVRFGMFVTIRD-AGGVEDEYRIVGVDEVDLEAGWISWLS 134 Query: 93 PVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 P+ A++G ++GD + ++ P G L ++ + Sbjct: 135 PLAQAIVGRKIGDVVQFQAPAG-EKKLHIVAVR 166 >UniRef50_A5CVW9 Transcription elongation factor greA n=4 Tax=Gammaproteobacteria RepID=GREA_VESOH Length = 159 Score = 71.1 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 4/96 (4%) Query: 33 ALNAELDRAQMCSPEEMPHD--VVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSV 90 + +L R Q+ ++ D V + + N D +V + S ++S Sbjct: 64 EIELKLSRMQIIDVTKLSQDGRCV-FGTTITLMNSVDNSEITYQIVGEDEADISLDKISC 122 Query: 91 MAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 +P+ +AL+G GD + + P G + ++L +EY Sbjct: 123 HSPIASALMGNEEGDKVIVKAPKGDIVY-KILSVEY 157 >UniRef50_A5VME9 Transcription elongation factor GreA n=49 Tax=Lactobacillaceae RepID=A5VME9_LACRD Length = 165 Score = 70.7 bits (172), Expect = 1e-11, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 43/92 (46%), Gaps = 3/92 (3%) Query: 34 LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93 LN +L A++ +P+ + + + V D E +V + + ++S +P Sbjct: 76 LNKQLQYAEIVTPKN--DHTIDLGTTVTIEFEDDHEQETYHIVGKQEADLAKQKISFDSP 133 Query: 94 VGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 +G A+L G ++ E P + ++++++E Sbjct: 134 LGQAILHQTAGTTVTVEAPQS-SYKVKIVKVE 164 >UniRef50_B9E669 Transcription elongation factor n=5 Tax=Clostridium RepID=B9E669_CLOK1 Length = 157 Score = 70.3 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 2/93 (2%) Query: 33 ALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMA 92 L +L A + + DV +N + EV TLV + N ++S+ + Sbjct: 67 ELEYQLKNAVIIESS-LETDVFDINRTALVKFYDVDEVEEVTLVSSVESDVKNMRISIES 125 Query: 93 PVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 P+G AL L+VGD P G +EV +L Sbjct: 126 PLGKALFRLKVGDKATVISPDG-NYDVEVEKLL 157 >UniRef50_C6B1R3 GreA/GreB family elongation factor n=16 Tax=cellular organisms RepID=C6B1R3_RHILS Length = 160 Score = 70.3 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 9/111 (8%) Query: 16 IDILLEQPAYAGLPIADA--LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVR 73 I+ + E+ A P+ D L A L AQ+ P D V S V FR DG V+ Sbjct: 56 IEDVNERRRQAASPLRDLRYLTARLRTAQLM-PSPTSIDTVAFGSTVTFR-RDDGRVQTY 113 Query: 74 TLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 +V + +S ++PV L+G VGD + LE++ + Sbjct: 114 RIVGEDEADPKAGSISYVSPVARLLMGKAVGDMVE-----TGGQELEIIAI 159 >UniRef50_Q930S1 Putative uncharacterized protein n=1 Tax=Sinorhizobium meliloti RepID=Q930S1_RHIME Length = 183 Score = 70.3 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 7/134 (5%) Query: 1 MSRPTII-INDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSR 59 MSR + D + +L++ + L +L+ A + E++P +VVT++++ Sbjct: 11 MSREAFCQLTAGDLNILMSMLDETGHTE-SFTILLREKLNYASVFFREDIPENVVTLDTQ 69 Query: 60 VKFRNLSDGEVRV--RTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVAT 117 V + VR LV A +N+ +SV G ALLGL VG+ G Sbjct: 70 VGYTV---NGVRTGPHLLVRNAAGRPANSAISVRTMRGLALLGLAVGERTEILGEDGWPE 126 Query: 118 HLEVLELEYQPEAA 131 L V + +QPE+ Sbjct: 127 TLAVERIVFQPESE 140 >UniRef50_Q7VM42 Transcription elongation factor greB n=27 Tax=Proteobacteria RepID=GREB_HAEDU Length = 162 Score = 70.3 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 50/133 (37%), Gaps = 10/133 (7%) Query: 3 RPTIIINDLDAERIDILLEQPAY--------AGLPIADALNAELDRAQMCSPEEMPHDVV 54 RP + + +A + E Y L+ L+ Q+ V Sbjct: 27 RPKVTQSVSEAAALGDRSENAEYIYGKRRLREIDRRIRFLSKRLEALQIIDYHPQQAGKV 86 Query: 55 TMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGG 114 + ++ N ++GE+ +V + + +S+ +PV AL+G V D I + P G Sbjct: 87 FFGAWIELEN-NEGEINQYRIVGCDEFDPTKNWISIDSPVARALIGKCVDDEIEVQTPTG 145 Query: 115 VATHLEVLELEYQ 127 A + ++ Y Sbjct: 146 KAVFY-INKIWYD 157 >UniRef50_C8W826 Transcription elongation factor n=7 Tax=Coriobacteriaceae RepID=C8W826_ATOPD Length = 159 Score = 70.3 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 43/116 (37%), Gaps = 7/116 (6%) Query: 9 NDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDG 68 ++ DA + + + + L A++ V + + V+ + G Sbjct: 49 SEYDAAKEEQ------SHNESRINEIRQILSVAKVVEGGSKRKVTVAIGTTVELADAK-G 101 Query: 69 EVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 + +V + ++S +P G AL+G + GD + + P G ++ + Sbjct: 102 KTTKYVIVGTTETNSLEHKISNESPAGEALIGHKKGDEVEFTTPNGKVKKYTIISI 157 >UniRef50_A5IYH4 Transcription elongation factor greA n=3 Tax=Mycoplasma RepID=GREA_MYCAP Length = 163 Score = 69.9 bits (170), Expect = 2e-11, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 54/119 (45%), Gaps = 9/119 (7%) Query: 9 NDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDG 68 + DA R ++ + I + L L+ A++ + + + + V++ N+ Sbjct: 51 AEYDAAR-----DRQSEVERRILE-LERILENAEIIDTKSAVQNKAGIGATVRYLNMKTN 104 Query: 69 EVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLR-VGDSIHWELPGGVATHLEVLELEY 126 + V T++ P ++S +PV A++ +GD + E+P +++VL++ Y Sbjct: 105 KELVVTIMGPHDSNPIENKISNESPVAQAIMEANGIGDVVEVEVP--QKYNIKVLDISY 161 >UniRef50_O51157 Transcription elongation factor greA n=23 Tax=Borrelia RepID=GREA_BORBU Length = 901 Score = 69.5 bits (169), Expect = 3e-11, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 45/97 (46%), Gaps = 2/97 (2%) Query: 32 DALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVM 91 ++L E++ A++ +++ VV ++V N G+ ++ P + +S Sbjct: 804 NSLMLEIENAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYK 863 Query: 92 APVGAALLGLRVGDSIHWELPGGVATHL--EVLELEY 126 +P G LL R GDS+++ + + ++ +++ Sbjct: 864 SPFGENLLDSREGDSLNFVINNTNFKYFVKKIEPIKF 900 >UniRef50_C5BTE2 Transcription elongation factor GreA n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BTE2_TERTT Length = 126 Score = 69.5 bits (169), Expect = 3e-11, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 37/108 (34%) Query: 17 DILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLV 76 L + A L L A + +++ V S V ++ + E + +V Sbjct: 15 RELEANLSSLPDTDAAELRTRLASATVVDNDDIMGGRVQFGSLVTVFSIDEEEEQSFQIV 74 Query: 77 YPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 + L +P+ AL G R G+ + L G EV + Sbjct: 75 SSDESLSGRGLLDQRSPLAQALFGAREGEVVRVLLQNGSNCDYEVTHI 122 >UniRef50_Q04UP0 Transcription elongation factor n=6 Tax=Leptospira RepID=Q04UP0_LEPBJ Length = 927 Score = 69.5 bits (169), Expect = 3e-11, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 1/92 (1%) Query: 33 ALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMA 92 L AE+ A + + D + + K +N S GEV +++ +S + Sbjct: 827 RLEAEIKSAIILDLTNVKTDKINIGVTAKLKNESTGEVVAYSILGAWDADTEKHIISYQS 886 Query: 93 PVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 P+ +LLG +VGD+ L G T VLE+ Sbjct: 887 PLAKSLLGKKVGDAAVLNL-TGAETRYTVLEI 917 >UniRef50_B1XUH7 Transcription elongation factor GreB n=2 Tax=Polynucleobacter necessarius RepID=B1XUH7_POLNS Length = 168 Score = 69.5 bits (169), Expect = 3e-11, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 9/103 (8%) Query: 32 DALNAELDRAQMCS-----PEEMPHDVVTMNSRVKFRNLS---DGEVRVRTLVYPAKMTD 83 LN L+ A + E D V + V + L G+ T+V ++ Sbjct: 64 RFLNKRLEFAIVVDNSARKSGENDADQVFFGASVTYSALEGPEAGKRTSITIVGVDEVDL 123 Query: 84 SNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 + +S ++P+ AL+ R+GD + + P G T +E+L+++Y Sbjct: 124 DKSHVSWVSPIAKALIKSRIGDCVFIQTPTG-PTEIEILDVQY 165 >UniRef50_Q88ZS9 Transcription elongation factor greA 1 n=7 Tax=Lactobacillus RepID=GREA1_LACPL Length = 156 Score = 69.1 bits (168), Expect = 4e-11, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 14/118 (11%) Query: 9 NDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDG 68 D R++ L LN +L AQ+ P + +D + + V L D Sbjct: 52 AKRDLGRLESRL-----------RYLNKQLQYAQIVQPAD--NDQLDIGKFVTIEFLDDH 98 Query: 69 EVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 + LV + ++S +P+G AL V D + P G ++V+ ++ Sbjct: 99 DQITYQLVGKQEANLEQQKISFTSPIGQALANHTVDDVVTVNAPNGAYQ-VKVIAVKR 155 >UniRef50_UPI0001C31C12 transcription elongation factor GreA n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31C12 Length = 154 Score = 69.1 bits (168), Expect = 4e-11, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 4/92 (4%) Query: 33 ALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMA 92 L A + D+V S V+ + G+ TLV A+ + + +LS+ + Sbjct: 65 KLRERERNATVTEASS-DVDIVAFGSTVEVE--TGGKNARYTLVGAAEASARDGKLSIES 121 Query: 93 PVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 PV AL+G R G+ + + P G A L V+ + Sbjct: 122 PVARALIGARAGEDVQVQTPSG-ARILRVVRV 152 >UniRef50_UPI00017427C8 transcription elongation factor GreA n=1 Tax=candidate division TM7 single-cell isolate TM7a RepID=UPI00017427C8 Length = 151 Score = 68.7 bits (167), Expect = 5e-11, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 50/117 (42%), Gaps = 11/117 (9%) Query: 9 NDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDG 68 + DA R + + + A + L A + + V + S V+ ++ Sbjct: 46 AEYDAAREEQGIVETRIAEIENI------LQNAAIITGGV--SGQVGLGSVVEL--MTGS 95 Query: 69 EVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 + V T+V P + ++S +P+GAAL+G +V D + P G +++ ++ Sbjct: 96 KTAVYTVVGPVEADPLEGKVSNESPIGAALMGKKVDDIVEINTPKG-KLEYKIISIK 151 >UniRef50_B9KMW2 Transcription elongation factor n=3 Tax=Rhodobacter sphaeroides RepID=B9KMW2_RHOSK Length = 164 Score = 68.7 bits (167), Expect = 5e-11, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 6/116 (5%) Query: 14 ERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVR 73 +R+D L E A + L A + A + P P D V V + + G V Sbjct: 55 DRLDRLPEAAAERDIRY---LEARIASAILVDPAAQPLDEVAFGLAVTVEDEA-GRRTVW 110 Query: 74 TLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEYQPE 129 + + + +++ AP+ AL+G R+G+ + W P G L V + + PE Sbjct: 111 EITGEDEAQATARRIAPQAPLARALMGARLGEKVVWTRPAG-EVTLTVTGIAH-PE 164 >UniRef50_A7VBG3 Putative uncharacterized protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VBG3_9CLOT Length = 195 Score = 68.7 bits (167), Expect = 5e-11, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 1/91 (1%) Query: 34 LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93 L+ + A++ E D V +N+ V+ D E +V + N +S ++P Sbjct: 94 LDRMVRTAEIIKDESA-DDEVGLNNTVRVYFEEDEEEDTYRIVTTVREDVLNGIISNISP 152 Query: 94 VGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 +G ALLG +VGD + G H+ + E+ Sbjct: 153 MGKALLGHKVGDRVEVVPGKGDPFHIVIREI 183 >UniRef50_B9J7D6 Transcription elongation factor protein n=52 Tax=Alphaproteobacteria RepID=B9J7D6_AGRRK Length = 160 Score = 68.4 bits (166), Expect = 7e-11, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 9/111 (8%) Query: 16 IDILLEQPAYAGLPIADA--LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVR 73 I+ + E+ A P+ D L + AQ P D+V S V F + DG V+ Sbjct: 56 IEDVNERRRQAAGPLRDLRYLAERIRTAQPI-PAPASIDIVAFGSTVTF-SRDDGRVQTY 113 Query: 74 TLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 +V + +S ++PV L+G VGD LE++ + Sbjct: 114 RIVGEDEADPKTGSISFVSPVAKLLMGKSVGDVASV-----GDQELEIIAI 159 >UniRef50_B1ZZX3 GreA/GreB family elongation factor n=3 Tax=Verrucomicrobia RepID=B1ZZX3_OPITP Length = 616 Score = 68.4 bits (166), Expect = 8e-11, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 1/93 (1%) Query: 34 LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93 L +L RA++ ++ D V++ + V+ ++ DG T++ +S P Sbjct: 519 LERDLGRARISDFKDASIDQVSVGTVVEVASVKDGHHTTYTVLGAWDGDPEKHFISYKTP 578 Query: 94 VGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 GAALLG + GD I+ + ++ + Sbjct: 579 FGAALLGKKTGDVINVKT-DASDEDYAIVSIAR 610 >UniRef50_B1ZQE9 GreA/GreB family elongation factor n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZQE9_OPITP Length = 166 Score = 68.0 bits (165), Expect = 1e-10, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 2/95 (2%) Query: 31 ADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSV 90 A L L A++ S +V ++V + G +V + +S Sbjct: 74 ARELQQILATAEIISSPAPDRSIVRFGAKVTVKEED-GTTSTYRIVGIDETEFYTGGISF 132 Query: 91 MAPVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 +P+ ALLG VGD I ++ P G LE+ +E Sbjct: 133 QSPLAQALLGASVGDRIQFQSPAG-PRQLEIQLIE 166 >UniRef50_C1CW74 Putative transcription elongation factor n=1 Tax=Deinococcus deserti VCD115 RepID=C1CW74_DEIDV Length = 162 Score = 68.0 bits (165), Expect = 1e-10, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 3/89 (3%) Query: 33 ALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNT---QLS 89 L L RA + E++P V + S V + G LV +++ Q+S Sbjct: 66 ELEDVLARAVIVEEEDLPRGQVAVGSVVMLEDDKHGRQLQVQLVSAVEISAMTEGVTQVS 125 Query: 90 VMAPVGAALLGLRVGDSIHWELPGGVATH 118 +PVG AL+G R G++ EL G + Sbjct: 126 DDSPVGKALMGRREGETFDVELEAGRVQY 154 >UniRef50_B7CAB2 Transcription elongation factor n=5 Tax=Erysipelotrichaceae RepID=B7CAB2_9FIRM Length = 162 Score = 68.0 bits (165), Expect = 1e-10, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 12/122 (9%) Query: 9 NDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEE-----MPHDVVTMNSRVKFR 63 D DA R E A I + L A + A++ + +VV + S VK Sbjct: 48 ADYDAAR-----EHQAQVEGRIRE-LEAMIKNAEIITESADVEDKKKKNVVKLGSTVKIL 101 Query: 64 NLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLE 123 +LSD + +V + N +LS P+ ++ +VGD + +++LE Sbjct: 102 DLSDNQEVTFNIVGTIEADPFNGKLSNTTPLAEVIMDHKVGDVCTVK-RVEEPYDVKILE 160 Query: 124 LE 125 ++ Sbjct: 161 IK 162 >UniRef50_Q2N9J5 Transcription elongation factor n=2 Tax=Erythrobacter RepID=Q2N9J5_ERYLH Length = 159 Score = 66.8 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 3/94 (3%) Query: 34 LNAELDRAQMCSPEEMP-HDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMA 92 L + A++ P E P D + + + D + TLV + S ++ + Sbjct: 67 LARRMKHARVIEPSEQPDKDRAFFGATLTLADEDD-ARKTVTLVGDDEQDASAGKIGWSS 125 Query: 93 PVGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 P+ AL G RVGD LP G EV+ + Y Sbjct: 126 PLARALRGARVGDLRTVHLPSG-EREWEVMAIAY 158 >UniRef50_Q9JVD0 Transcription elongation factor greB n=64 Tax=Bacteria RepID=GREB_NEIMA Length = 163 Score = 66.4 bits (161), Expect = 2e-10, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 3/96 (3%) Query: 32 DALNAELDRAQMCSPE-EMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSV 90 L L+ A + PE D V + V DG + +V ++ + ++S Sbjct: 66 RFLTKRLEAAVVVDPELREATDQVFFGATVGLL-RGDGREQTVKIVGIDEIDTAQNKISW 124 Query: 91 MAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 ++P+ L+ R GD + P G +E+L +EY Sbjct: 125 ISPLARCLIKAREGDEVVLNTPEGRE-EIEILSVEY 159 >UniRef50_B6BTF1 GreA/GreB family elongation factor n=2 Tax=Betaproteobacteria RepID=B6BTF1_9PROT Length = 164 Score = 66.4 bits (161), Expect = 2e-10, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 8/127 (6%) Query: 5 TIIINDLDAERIDILLEQPAYAG--LPIADALNAELDR---AQMCSPEEMPHDVVTMNSR 59 TI + + + + I L + P + + L L R A + E ++ V + Sbjct: 41 TIHLIETEIKSIKELEDSPENKQNKMKLERDLRYYLKRFETAILIDKHE-ENNKVLFGAH 99 Query: 60 VKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHL 119 V + + E +V + +LS ++P+ L+G +GD + W+ G Sbjct: 100 VILID-ENDEAYKFQIVGEDEADIKQNKLSYVSPLAKELIGSLIGDEVVWKRADGNRVVF 158 Query: 120 EVLELEY 126 + + Y Sbjct: 159 -IDSINY 164 >UniRef50_D1R523 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R523_9CHLA Length = 731 Score = 66.4 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 40/88 (45%), Gaps = 1/88 (1%) Query: 33 ALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMA 92 L+ +L+RA++ + +++ + V++ S V+ + V T++ P LS + Sbjct: 640 RLSEQLNRARIITKDDIYLNQVSVGSIVELEDPEKN-VVTYTILGPWDADADTNILSFQS 698 Query: 93 PVGAALLGLRVGDSIHWELPGGVATHLE 120 A+LG +VG+ + ++ Sbjct: 699 KFAEAMLGRKVGEEFEFRNQNFTIRTIK 726 >UniRef50_UPI0001746370 transcript cleavage factor/unknown domain fusion protein n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001746370 Length = 627 Score = 66.4 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 43/100 (43%), Gaps = 3/100 (3%) Query: 35 NAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPV 94 EL RA+ + + V + + V +++ G+ +T++ + LS ++ + Sbjct: 524 ERELRRARGTDFVGVSTETVGIGTIVDLQDVGTGKTETQTILGAWDGDPDQSILSYLSEM 583 Query: 95 GAALLGLRVGDSIHWELPGGVATHLEVLEL---EYQPEAA 131 AL+G RVGD ++++ + Q EAA Sbjct: 584 AKALIGKRVGDEAELPTDTHGTRKVKIVSIRPYRTQAEAA 623 >UniRef50_B4RDE4 Transcription elongation factor GreA/GreB, family n=1 Tax=Phenylobacterium zucineum HLK1 RepID=B4RDE4_PHEZH Length = 161 Score = 66.4 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 3/87 (3%) Query: 39 DRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAAL 98 AQ+ D V +RV FR G LV + + +LS +AP+ A+ Sbjct: 72 ANAQVVE-SPADPDEVAFGTRVTFR-KDGGAPETVELVGEDEAEPAQGRLSWVAPLARAM 129 Query: 99 LGLRVGDSIHWELPGGVATHLEVLELE 125 +G G+++ E A LE+L +E Sbjct: 130 IGAMPGETVELETRT-PAIRLEILAVE 155 >UniRef50_A6STV7 Transcription elongation factor GreB n=2 Tax=Oxalobacteraceae RepID=A6STV7_JANMA Length = 175 Score = 66.4 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 3/94 (3%) Query: 34 LNAELDRAQMCSPE-EMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMA 92 L ++ A++ D + + V + N + GE T+V ++ + ++S ++ Sbjct: 80 LQTRVESAEVVDASVHADGDRIFFGASVDYEN-TAGETHTATIVGLDELDPAQGRISWLS 138 Query: 93 PVGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 P+ +LLG GD++ + P G L VL + Y Sbjct: 139 PLAQSLLGAEEGDTVLLQTPAG-PEELHVLTVRY 171 >UniRef50_B0VIH5 Putative transcription elongation factor n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VIH5_9BACT Length = 159 Score = 65.7 bits (159), Expect = 4e-10, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 45/102 (44%), Gaps = 5/102 (4%) Query: 28 LPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSN-- 85 D L ++ E P D+V + +++ E LV P ++ N Sbjct: 59 DNEIDYLRRRSANLKVIDTSEFPKDMVRFGTYCVAEDINTKECICYHLVGPEELNYYNEE 118 Query: 86 --TQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 ++S+++P+G ALL ++G+ + P G L++ E++ Sbjct: 119 GIQEVSIVSPIGKALLSKKIGEIAIVKAPIG-ERKLKIREIK 159 >UniRef50_B3PM73 Transcription elongation factor greA n=1 Tax=Mycoplasma arthritidis 158L3-1 RepID=GREA_MYCA5 Length = 159 Score = 65.7 bits (159), Expect = 5e-10, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 43/117 (36%), Gaps = 9/117 (7%) Query: 9 NDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPH-DVVTMNSRVKFRNLSD 67 + DA R + LD ++ + VV + S V +L D Sbjct: 50 AEYDAAR------DKQATIENEITEIQHILDNYEIIKTQTNRQVSVVRIGSNVSVVSLKD 103 Query: 68 GEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 V +V N ++S +P+ A++G + G+ + E P ++++ + Sbjct: 104 DTVINFQIVGALDTDPFNGKISNTSPLAKAVIGRKAGEVVEVEAPN--KYQVKIVHV 158 >UniRef50_UPI0000E87FB5 transcription elongation factor GreB n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87FB5 Length = 144 Score = 65.3 bits (158), Expect = 5e-10, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 41/95 (43%), Gaps = 2/95 (2%) Query: 33 ALNAELDRAQMCSPEE-MPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVM 91 L ++ A + P + V + VK + +V ++ + +S + Sbjct: 51 FLLTAIEDADIVHPSTSIDKKKVYFGANVKLLDEQSKSTLDIRIVGAHEINHNIGNISWL 110 Query: 92 APVGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 +P+ AL+G D I + P + T++ +L+++Y Sbjct: 111 SPLAKALIGRTSSDLIEVQTPMNIKTYI-ILKVDY 144 >UniRef50_C1ABM5 Transcription elongation factor GreA n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ABM5_GEMAT Length = 161 Score = 65.3 bits (158), Expect = 6e-10, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 1/82 (1%) Query: 44 CSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRV 103 ++P D V + S+V +L LV+ + +++ +P+G AL G V Sbjct: 70 IDITQIPGDRVGLGSKVIVEDLQSKARETYELVFGDAGELHDGHVTMGSPIGRALQGKSV 129 Query: 104 GDSIHWELPGGVATHLEVLELE 125 G+ +LP L+++EL+ Sbjct: 130 GEEAILKLPT-RIRKLQIVELQ 150 >UniRef50_Q1IXC6 GreA/GreB family elongation factor n=1 Tax=Deinococcus geothermalis DSM 11300 RepID=Q1IXC6_DEIGD Length = 158 Score = 65.3 bits (158), Expect = 6e-10, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 45/117 (38%), Gaps = 7/117 (5%) Query: 9 NDLDAERIDILLEQPAYAGLPIADA----LNAELDRAQMCSPEEMPHDVVTMNSRVKFRN 64 DA ++ Q A LP +A L L RA + + V + S V R+ Sbjct: 36 TLDDAMDLEDRSFQAAQYDLPTMEARILELEDVLARAVIVEEPQARDGGVALGSVVVLRD 95 Query: 65 LSDGEVRVRTLVYPAKMTDSNT---QLSVMAPVGAALLGLRVGDSIHWELPGGVATH 118 LV ++ Q+S +PVG ALLG R G+S +L A + Sbjct: 96 EQHDRELRVQLVSAVEVDALAEGATQVSEDSPVGKALLGRRAGESFEVDLGSSRARY 152 >UniRef50_C0ZE34 Putative uncharacterized protein n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZE34_BREBN Length = 164 Score = 64.9 bits (157), Expect = 7e-10, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%) Query: 56 MNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGV 115 + S VK D T+VYP + N ++S ++P+G LL DS+ E P G Sbjct: 86 LGSSVKVLFEEDQFEESFTVVYPTDIDPDNNRISFLSPIGRQLLLAAPHDSVVLESPVGR 145 Query: 116 ATHLEVLELEY 126 ++V E+ + Sbjct: 146 QQ-VQVREISF 155 >UniRef50_B1AIU2 Transcription elongation factor greA n=28 Tax=Ureaplasma RepID=GREA_UREP2 Length = 156 Score = 64.9 bits (157), Expect = 8e-10, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 9/129 (6%) Query: 4 PTIIINDLDAERIDILLEQPAYAGLPIA--------DALNAELDRAQMCSPEEMPHDVVT 55 P I DA L E Y D + L+ ++ D V+ Sbjct: 27 PAITKQLQDAREQGDLSENADYDAAKNEQAALKKRKDEIEEILENYELIEDVLRSTDEVS 86 Query: 56 MNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGV 115 + S ++ N V TLV ++S+ P+G AL+ + G + Sbjct: 87 IGSTIEIYNYQKDCEEVITLVGSMDSDPFANKISIDTPLGKALVKQKKGTEVTVHTLAS- 145 Query: 116 ATHLEVLEL 124 ++++++ Sbjct: 146 PYKVKIIKI 154 >UniRef50_P47524 Transcription elongation factor greA n=4 Tax=Mycoplasma RepID=GREA_MYCGE Length = 161 Score = 64.5 bits (156), Expect = 1e-09, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 40/92 (43%), Gaps = 9/92 (9%) Query: 38 LDRAQMCSPEEMPHDV--VTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVG 95 L A++ S + V V++ S V+ + S T+V + ++S +P+ Sbjct: 71 LANAKLISDHQAKTKVTKVSLGSTVEIYDYSSKSNEKYTIVGTLEANPEEHKISNESPLA 130 Query: 96 AALLGLRVGDSIH---WELPGGVATHLEVLEL 124 A+ G +GD E+P +++L++ Sbjct: 131 LAIYGRLIGDECDVVGIEVP----YRVKILKI 158 >UniRef50_Q6MF39 Putative uncharacterized protein n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MF39_PARUW Length = 723 Score = 64.5 bits (156), Expect = 1e-09, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 43/92 (46%), Gaps = 6/92 (6%) Query: 34 LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93 L+ + RA++ +P+++ D V + S + + S G+ +++ P LS+ + Sbjct: 633 LSEQFGRARIITPDDILTDEVGIGSVIDLID-SQGQKIRYSILGPWDADPEKNILSLNSK 691 Query: 94 VGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 A++G ++GD ++ +VL L Sbjct: 692 FAQAMIGKKIGDQFQFK-----DETFKVLSLH 718 >UniRef50_A2SJD8 Transcription elongation factor n=50 Tax=Proteobacteria RepID=A2SJD8_METPP Length = 213 Score = 64.1 bits (155), Expect = 1e-09, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 3/101 (2%) Query: 32 DALNAELDRAQMCSPE-EMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSV 90 L L+ A++ P D V + V + DG R T+ + + ++S Sbjct: 115 RFLTKRLEIAEVADPSVHRGSDQVFFGATVTYA-APDGVERTITIKGIDEADNLQAEVSW 173 Query: 91 MAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEYQPEAA 131 ++PV ALL RVGD + P G +EV+E+ Y P A Sbjct: 174 ISPVARALLKARVGDEVTLLTPQG-PQTIEVIEVRYPPRPA 213 >UniRef50_A9NGN4 Transcription elongation factor greA n=7 Tax=Acholeplasmataceae RepID=GREA_ACHLI Length = 158 Score = 64.1 bits (155), Expect = 1e-09, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 11/118 (9%) Query: 9 NDLDAERIDILLEQPAYAGLPIADALNAE--LDRAQMCSPEEMPHDVVTMNSRVKFRNLS 66 D DA R A L E L ++ + V + +V + Sbjct: 49 ADYDAAR--------NEQARIEARILEIESILKNVKIIRTND-DSTTVNIGKKVLLHFVE 99 Query: 67 DGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 + +V + N ++S+ +P+G A+ G VGD + + +++E+ + Sbjct: 100 KNKDVEYHVVGTIEADPKNFKISIESPLGRAIKGKEVGDLVQIKSATNKQSNVEIKAI 157 >UniRef50_C7T958 Transcription elongation factor n=4 Tax=Lactobacillus rhamnosus RepID=C7T958_LACRG Length = 165 Score = 64.1 bits (155), Expect = 1e-09, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 5/99 (5%) Query: 34 LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93 L+ + A++ +P ++ + + V D + LV PA+ +L++ +P Sbjct: 65 LDKLIRYAKVTTPAA--ANLADIGNWVTLEFDDDQDEDTYELVGPAEAGMGAAKLAINSP 122 Query: 94 VGAALLGLRVGDSIHWELPGGVATHLEVLELEYQPEAAG 132 +GAA+ VGD++ P G + V+ + P A G Sbjct: 123 LGAAVRRHHVGDTVTVTAPSGTYQ-VTVMAIS--PHAPG 158 >UniRef50_Q2G8D8 GreA/GreB family elongation factor n=4 Tax=cellular organisms RepID=Q2G8D8_NOVAD Length = 182 Score = 63.7 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 4/99 (4%) Query: 33 ALNAELDRAQMCSPEEM-PHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVM 91 L + +++ P V + V+ + D +V TLV + S + Sbjct: 87 FLARRMKASRVVDPARQEDRSRVLFGATVEIADEDDN-RKVLTLVGDDEQDASKGLIGWS 145 Query: 92 APVGAALLGLRVGDSIHWELPGGVATHLEVLELEYQPEA 130 AP+ AL G RVGD LP G E++ + Y PEA Sbjct: 146 APIAKALRGSRVGDLRIVRLPSG-QKEWEIMAISY-PEA 182 >UniRef50_C4ZAT8 Transcription elongation factor GreA n=21 Tax=Firmicutes RepID=C4ZAT8_EUBR3 Length = 167 Score = 63.0 bits (152), Expect = 3e-09, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 1/92 (1%) Query: 34 LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93 L + A + S E D V M + V D E +V + +S +P Sbjct: 64 LEKMIKTAVVISDES-KDDEVGMFNTVDVYFEDDDETETYKIVTTVRGNSLKNLISKESP 122 Query: 94 VGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 +GAA+ G +VGD ++ + +++++++ Sbjct: 123 LGAAIFGHKVGDRCEVKVNDDYSYFVKIMKIQ 154 >UniRef50_Q1IZY0 GreA/GreB family elongation factor n=4 Tax=Deinococci RepID=Q1IZY0_DEIGD Length = 162 Score = 62.6 bits (151), Expect = 3e-09, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 4/98 (4%) Query: 32 DALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNT---QL 88 + L L RA + E V + + V N + + +V + T ++ Sbjct: 66 EELEDTLARATLIEDHE-NAGRVELGAVVTLNNETTKQTMRVQVVSAPEATVLGGSLPRI 124 Query: 89 SVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 S +PVG L+G + ++ L G V ++EY Sbjct: 125 SEESPVGRQLMGRKKDETFVVNLENGKQVKYRVQDIEY 162 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q2LTP9 Transcription elongation factor n=2 Tax=Deltapro... 167 8e-41 UniRef50_C5S652 GreA/GreB family elongation factor n=2 Tax=Prote... 166 2e-40 UniRef50_P0AFW6 Regulator of nucleoside diphosphate kinase n=155... 160 1e-38 UniRef50_Q3BX42 Regulator of nucleoside diphosphate kinase n=9 T... 158 4e-38 UniRef50_A6VVR5 GreA/GreB family elongation factor n=15 Tax=Prot... 158 8e-38 UniRef50_B5EI69 GreA/GreB family elongation factor n=6 Tax=Desul... 154 5e-37 UniRef50_A0LL17 GreA/GreB family elongation factor n=3 Tax=Bacte... 153 2e-36 UniRef50_B8GS58 GreA/GreB family elongation factor n=22 Tax=Prot... 153 2e-36 UniRef50_Q6MQZ8 Regulator of nucleoside diphosphate kinase n=1 T... 153 2e-36 UniRef50_Q1H3Z9 GreA/GreB family elongation factor n=1 Tax=Methy... 146 2e-34 UniRef50_Q11P04 Transcription elongation factor n=1 Tax=Cytophag... 145 4e-34 UniRef50_C6RP41 GreA/GreB family elongation factor n=4 Tax=Acine... 143 2e-33 UniRef50_B0SEQ9 Transcription elongation factor n=2 Tax=Leptospi... 141 8e-33 UniRef50_A4XNX9 GreA/GreB family elongation factor n=16 Tax=Bact... 140 1e-32 UniRef50_Q7MD62 Transcription elongation factor n=10 Tax=Proteob... 140 1e-32 UniRef50_B9MBQ3 GreA/GreB family elongation factor n=6 Tax=Betap... 140 2e-32 UniRef50_B9NGJ6 Predicted protein n=12 Tax=cellular organisms Re... 139 2e-32 UniRef50_A9GAI2 Regulator of nucleoside diphosphate kinase n=1 T... 139 3e-32 UniRef50_B5JTX6 Transcription elongation factor n=1 Tax=gamma pr... 138 4e-32 UniRef50_Q13WN5 GreA/GreB family elongation factor n=50 Tax=Burk... 137 9e-32 UniRef50_B8G0E1 GreA/GreB family elongation factor n=2 Tax=Desul... 137 9e-32 UniRef50_Q3K4S3 Regulator of nucleoside diphosphate kinase n=2 T... 134 7e-31 UniRef50_A9MBQ4 GreA/GreB family elongation factor n=36 Tax=Bruc... 134 8e-31 UniRef50_C9P6Y2 Regulator of nucleoside diphosphate kinase n=1 T... 133 2e-30 UniRef50_Q3SMM4 GreA/GreB family elongation factor n=1 Tax=Thiob... 133 2e-30 UniRef50_B2SQJ5 Regulator of nucleoside diphosphate kinase n=8 T... 133 2e-30 UniRef50_C6X5Q8 Transcription elongation factor n=1 Tax=Flavobac... 132 3e-30 UniRef50_Q4KB20 Acetyltransferase, GNAT family family n=9 Tax=Ba... 132 3e-30 UniRef50_A6C278 Nucleoside diphosphate kinase regulator protein,... 132 3e-30 UniRef50_Q74EX3 Nucleoside diphosphate kinase regulator protein,... 132 3e-30 UniRef50_A6X582 GreA/GreB family elongation factor n=3 Tax=Rhizo... 132 4e-30 UniRef50_C0N448 Putative uncharacterized protein n=1 Tax=Methylo... 131 6e-30 UniRef50_C3X2V3 GreA/GreB family elongation factor n=2 Tax=Oxalo... 131 6e-30 UniRef50_A5F052 Regulator of nucleoside diphosphate kinase n=31 ... 130 1e-29 UniRef50_D1SYS0 GreA/GreB family elongation factor n=1 Tax=Acido... 129 3e-29 UniRef50_A6GQE5 Nucleoside diphosphate kinase regulator n=1 Tax=... 129 4e-29 UniRef50_B3PF63 Regulator of nucleoside diphosphate kinase n=1 T... 128 4e-29 UniRef50_A1TUC9 GreA/GreB family elongation factor n=4 Tax=Burkh... 127 1e-28 UniRef50_A5VGM9 GreA/GreB family elongation factor n=1 Tax=Sphin... 126 3e-28 UniRef50_C6VSR5 GreA/GreB family elongation factor n=2 Tax=Sphin... 125 4e-28 UniRef50_B8IFL5 GreA/GreB family elongation factor n=8 Tax=Methy... 124 1e-27 UniRef50_B9KH08 Transcription elongation factor n=9 Tax=Ricketts... 124 1e-27 UniRef50_Q3SU57 GreA/GreB family elongation factor n=9 Tax=Brady... 123 1e-27 UniRef50_A5V983 GreA/GreB family elongation factor n=1 Tax=Sphin... 123 2e-27 UniRef50_Q5P744 Transcription elongation factor n=3 Tax=Proteoba... 122 3e-27 UniRef50_P64276 Transcription elongation factor greA n=48 Tax=de... 120 1e-26 UniRef50_A8LN19 GreA/GreB family elongation factor n=8 Tax=Alpha... 120 1e-26 UniRef50_C6WYK0 GreA/GreB family elongation factor n=2 Tax=Methy... 120 1e-26 UniRef50_A9EFF1 GreA/GreB family elongation factor n=1 Tax=Ocean... 119 2e-26 UniRef50_A7IJH2 GreA/GreB family elongation factor n=4 Tax=Rhizo... 119 2e-26 UniRef50_B4RF21 Transcription elongation factor n=2 Tax=cellular... 119 2e-26 UniRef50_A8HR94 Transcription elongation factor greA n=5 Tax=Pro... 119 3e-26 UniRef50_Q0A765 Transcription elongation factor greA n=23 Tax=Pr... 119 4e-26 UniRef50_B0T7C4 GreA/GreB family elongation factor n=1 Tax=Caulo... 118 7e-26 UniRef50_Q98F06 Nucleoside diphosphate kinase regulator n=2 Tax=... 117 7e-26 UniRef50_A7HFE1 GreA/GreB family elongation factor n=1 Tax=Anaer... 117 9e-26 UniRef50_B3E3H5 Transcription elongation factor greA n=19 Tax=Pr... 117 1e-25 UniRef50_Q057J4 Transcription elongation factor greA n=20 Tax=Pr... 117 1e-25 UniRef50_Q1LSK1 Transcription elongation factor greA n=16 Tax=Pr... 117 1e-25 UniRef50_B2S6W5 Transcription elongation factor greA n=39 Tax=Ba... 116 2e-25 UniRef50_A1U1V6 GreA/GreB family elongation factor n=2 Tax=Marin... 116 2e-25 UniRef50_B7L307 GreA/GreB family elongation factor n=1 Tax=Methy... 116 2e-25 UniRef50_Q4HT85 Transcription elongation factor n=1 Tax=Campylob... 116 3e-25 UniRef50_Q7UVA0 Transcription elongation factor greA n=3 Tax=Pla... 116 3e-25 UniRef50_D2R891 Transcription elongation factor GreA n=1 Tax=Pir... 115 4e-25 UniRef50_Q1H282 GreA/GreB family elongation factor n=2 Tax=Prote... 115 5e-25 UniRef50_C6XWY5 Transcription elongation factor GreA/GreB domain... 114 1e-24 UniRef50_C0QKN0 Transcription elongation factor n=1 Tax=Desulfob... 114 1e-24 UniRef50_B0T793 GreA/GreB family elongation factor n=1 Tax=Caulo... 113 2e-24 UniRef50_Q7VM42 Transcription elongation factor greB n=27 Tax=Pr... 113 2e-24 UniRef50_A7HAZ2 GreA/GreB family elongation factor n=5 Tax=Myxoc... 113 2e-24 UniRef50_A6LPL4 Transcription elongation factor greA n=30 Tax=Cl... 113 2e-24 UniRef50_A4BB58 Nucleoside diphosphate kinase regulator n=1 Tax=... 112 2e-24 UniRef50_Q2GA51 GreA/GreB family elongation factor n=1 Tax=Novos... 112 3e-24 UniRef50_Q725M4 Transcription elongation factor greA n=4 Tax=Des... 112 4e-24 UniRef50_A8F083 Transcription elongation factor greA n=13 Tax=Ri... 111 5e-24 UniRef50_A3ESJ0 Transcription elongation factor n=4 Tax=Bacteria... 111 6e-24 UniRef50_Q04EK0 Transcription elongation factor greA n=4 Tax=Bac... 111 7e-24 UniRef50_C0A6F4 GreA/GreB family elongation factor n=1 Tax=Opitu... 111 8e-24 UniRef50_Q930S2 Putative uncharacterized protein n=1 Tax=Sinorhi... 111 8e-24 UniRef50_B1ZU20 GreA/GreB family elongation factor n=1 Tax=Opitu... 111 8e-24 UniRef50_Q0BZP7 Regulatory protein n=1 Tax=Hyphomonas neptunium ... 111 1e-23 UniRef50_Q8ZJH2 Transcription elongation factor greB n=165 Tax=P... 110 2e-23 UniRef50_D0J9T5 Transcription elongation factor n=55 Tax=Bacteri... 110 2e-23 UniRef50_B4UCU9 Transcription elongation factor greA n=588 Tax=B... 109 2e-23 UniRef50_Q97EB6 Transcription elongation factor greA n=6 Tax=Clo... 109 3e-23 UniRef50_Q15Z69 GreA/GreB family elongation factor n=1 Tax=Pseud... 109 3e-23 UniRef50_A5V3E1 Transcription elongation factor greA n=13 Tax=Pr... 109 3e-23 UniRef50_A4CMB9 Nucleoside diphosphate kinase regulator n=1 Tax=... 109 4e-23 UniRef50_D0LKY5 Transcription elongation factor n=1 Tax=Haliangi... 108 5e-23 UniRef50_UPI00016C498C transcription elongation factor greA n=1 ... 108 6e-23 UniRef50_C9RKD0 Transcription elongation factor n=1 Tax=Fibrobac... 108 6e-23 UniRef50_Q2GD99 Transcription elongation factor greA n=2 Tax=Neo... 108 7e-23 UniRef50_Q9HZY5 Transcription elongation factor greB n=13 Tax=Ga... 107 8e-23 UniRef50_A6EIL5 Nucleoside diphosphate kinase regulator protein,... 107 8e-23 UniRef50_C4XLU8 Transcription elongation factor greA n=11 Tax=De... 107 1e-22 UniRef50_A9WK05 Transcription elongation factor greA n=6 Tax=Chl... 107 1e-22 UniRef50_D1B0C0 Transcription elongation factor n=4 Tax=Campylob... 107 1e-22 UniRef50_Q5QX12 Transcription elongation factor family protein n... 107 1e-22 UniRef50_A5FRA2 Transcription elongation factor n=3 Tax=Dehaloco... 107 2e-22 UniRef50_Q88DU7 Transcription elongation factor greA n=83 Tax=Pr... 106 2e-22 UniRef50_B1MX52 Transcription elongation factor greA n=11 Tax=Fi... 106 2e-22 UniRef50_Q1H0G6 GreA/GreB family elongation factor n=3 Tax=Prote... 106 2e-22 UniRef50_D1B632 Transcription elongation factor n=4 Tax=Synergis... 106 2e-22 UniRef50_UPI0001C3129D transcription elongation factor GreA n=1 ... 106 2e-22 UniRef50_Q2LR03 Transcription elongation factor greA n=1 Tax=Syn... 106 2e-22 UniRef50_A7HDS3 Transcription elongation factor GreB n=3 Tax=Myx... 106 2e-22 UniRef50_A0AIU5 Transcription elongation factor greA n=99 Tax=Ba... 106 2e-22 UniRef50_A0LZA7 Transcription elongation factor n=1 Tax=Gramella... 105 4e-22 UniRef50_C7GYY1 Transcription elongation factor n=1 Tax=Eubacter... 105 4e-22 UniRef50_A5FHU8 GreA/GreB family elongation factor n=1 Tax=Flavo... 105 5e-22 UniRef50_C6WVB7 GreA/GreB family elongation factor n=2 Tax=Methy... 104 9e-22 UniRef50_A0LK20 Transcription elongation factor greA n=1 Tax=Syn... 104 1e-21 UniRef50_C9RNS9 GreA/GreB family elongation factor n=1 Tax=Fibro... 103 1e-21 UniRef50_A3PS97 GreA/GreB family elongation factor n=4 Tax=Rhodo... 103 2e-21 UniRef50_Q98F07 Nucleoside diphosphate kinase regulator; Rnk n=2... 103 2e-21 UniRef50_A7HXN2 GreA/GreB family elongation factor n=1 Tax=Parvi... 103 2e-21 UniRef50_Q096W9 Transcription elongation factor GreB n=1 Tax=Sti... 102 2e-21 UniRef50_B4W8F1 Putative uncharacterized protein n=1 Tax=Brevund... 102 3e-21 UniRef50_Q67JL1 Transcription elongation factor n=2 Tax=Clostrid... 102 3e-21 UniRef50_A8SDG2 Transcription elongation factor n=2 Tax=Clostrid... 102 5e-21 UniRef50_C9KJ19 Transcription elongation factor n=1 Tax=Mitsuoke... 102 5e-21 UniRef50_C7CFG6 Putative regulator n=1 Tax=Methylobacterium exto... 101 6e-21 UniRef50_C0QWD9 Transcription elongation factor n=2 Tax=Brachysp... 101 8e-21 UniRef50_Q817Z6 Transcription elongation factor greA n=141 Tax=c... 101 8e-21 UniRef50_Q1QUF3 GreA/GreB family elongation factor n=1 Tax=Chrom... 100 9e-21 UniRef50_Q2Z001 Transcription elongation factor n=1 Tax=uncultur... 100 1e-20 UniRef50_B4RBL2 Transcription elongation factor n=1 Tax=Phenylob... 100 1e-20 UniRef50_A6EMP4 Transcription elongation factor n=4 Tax=Bacteroi... 100 1e-20 UniRef50_B9XEY1 GreA/GreB family elongation factor n=1 Tax=bacte... 100 2e-20 UniRef50_A5CVW9 Transcription elongation factor greA n=4 Tax=Gam... 100 2e-20 UniRef50_C1XQ58 Transcription elongation factor n=2 Tax=Meiother... 100 2e-20 UniRef50_Q30T56 Transcription elongation factor n=3 Tax=Campylob... 100 2e-20 UniRef50_Q2Y7V5 GreA/GreB family elongation factor n=33 Tax=cell... 100 2e-20 UniRef50_Q0BR49 Transcription elongation factor greB n=4 Tax=cel... 100 2e-20 UniRef50_A6W1U9 Transcription elongation factor GreB n=17 Tax=Ga... 100 2e-20 UniRef50_Q03RN4 Transcription elongation factor n=1 Tax=Lactobac... 100 2e-20 UniRef50_B8IHN9 GreA/GreB family elongation factor n=1 Tax=Methy... 100 2e-20 UniRef50_Q3Z8E7 Transcription elongation factor greA n=2 Tax=Deh... 99 3e-20 UniRef50_Q3ATA7 Transcription elongation factor greA n=13 Tax=Ba... 99 3e-20 UniRef50_C1F9R4 Transcription elongation factor GreA n=1 Tax=Aci... 99 3e-20 UniRef50_C8S319 GreA/GreB family elongation factor n=1 Tax=Rhodo... 99 4e-20 UniRef50_A3HZU2 Transcription elongation factor GreB n=2 Tax=Bac... 99 5e-20 UniRef50_C4Z9L9 Transcription elongation factor n=3 Tax=Firmicut... 99 5e-20 UniRef50_Q98Q16 Transcription elongation factor greA n=3 Tax=Myc... 99 5e-20 UniRef50_C7PP41 Transcription elongation factor n=1 Tax=Chitinop... 98 6e-20 UniRef50_Q01RT9 GreA/GreB family elongation factor n=2 Tax=Acido... 98 6e-20 UniRef50_Q1AU03 Transcription elongation factor n=1 Tax=Rubrobac... 98 6e-20 UniRef50_D0J5N8 Kelongation factor GreB n=4 Tax=Proteobacteria R... 98 7e-20 UniRef50_Q1PYP5 Transcription elongation factor n=1 Tax=Candidat... 98 1e-19 UniRef50_C0JZV3 Transcription elongation factor GreA n=1 Tax=unc... 98 1e-19 UniRef50_D1PEW3 Transcription elongation factor n=1 Tax=Prevotel... 97 2e-19 UniRef50_UPI0001C37CEA transcription elongation factor GreA n=1 ... 97 2e-19 UniRef50_D2T9B8 Transcription elongation factor greB n=3 Tax=Erw... 96 3e-19 UniRef50_Q04HS9 Transcription elongation factor greA n=90 Tax=Ba... 96 3e-19 UniRef50_C6X3W9 Transcription elongation factor GreB n=1 Tax=Fla... 96 3e-19 UniRef50_C1ZBG3 Transcription elongation factor n=1 Tax=Planctom... 96 3e-19 UniRef50_Q8P7P8 Transcription elongation factor greB n=53 Tax=Pr... 96 4e-19 UniRef50_Q88KH5 Transcription elongation factor greB n=84 Tax=Ga... 96 4e-19 UniRef50_B2KBD2 GreA/GreB family elongation factor n=1 Tax=Elusi... 96 5e-19 UniRef50_Q1J0L4 Transcription elongation factor n=3 Tax=Deinococ... 95 5e-19 UniRef50_A5FHJ3 GreA/GreB family elongation factor n=3 Tax=Flavo... 95 5e-19 UniRef50_Q11G80 GreA/GreB family elongation factor n=1 Tax=Chela... 95 6e-19 UniRef50_A6H247 Transcription elongation factor greA n=33 Tax=Ba... 95 6e-19 UniRef50_Q1CX76 Transcription elongation factor, GreA/GreB famil... 95 7e-19 UniRef50_A6NPJ1 Putative uncharacterized protein n=1 Tax=Bactero... 95 7e-19 UniRef50_Q4A759 Transcription elongation factor greA n=4 Tax=Myc... 95 8e-19 UniRef50_Q5SKM1 Transcription elongation factor n=5 Tax=Thermus ... 95 8e-19 UniRef50_O51157 Transcription elongation factor greA n=23 Tax=Bo... 94 8e-19 UniRef50_B1ZD84 GreA/GreB family elongation factor n=4 Tax=Methy... 94 1e-18 UniRef50_Q12SN9 Transcription elongation factor GreB n=17 Tax=Ba... 94 1e-18 UniRef50_A5IYH4 Transcription elongation factor greA n=3 Tax=Myc... 94 1e-18 UniRef50_B1H062 Transcription elongation factor n=1 Tax=uncultur... 94 1e-18 UniRef50_D2RL35 GreA/GreB family elongation factor n=3 Tax=Veill... 94 1e-18 UniRef50_A0M1N1 GreA-like transcription elongation factor n=3 Ta... 94 2e-18 UniRef50_B9KZF4 Transcription elongation factor greA n=2 Tax=The... 93 2e-18 UniRef50_A5VME9 Transcription elongation factor GreA n=49 Tax=La... 93 2e-18 UniRef50_A2SJD8 Transcription elongation factor n=50 Tax=Proteob... 93 2e-18 UniRef50_C5BN87 Transcription elongation factor GreB n=5 Tax=Pro... 93 2e-18 UniRef50_Q2S2N3 Transcription elongation factor n=1 Tax=Saliniba... 93 3e-18 UniRef50_A2RGA4 Transcription elongation factor greA n=111 Tax=F... 93 3e-18 UniRef50_B1AIU2 Transcription elongation factor greA n=28 Tax=Ur... 93 3e-18 UniRef50_Q13CU9 Putative uncharacterized protein n=1 Tax=Rhodops... 93 3e-18 UniRef50_B5ZLJ0 Transcription elongation factor GreB n=5 Tax=Pro... 93 3e-18 UniRef50_Q9JVD0 Transcription elongation factor greB n=64 Tax=Ba... 93 4e-18 UniRef50_Q2N9J5 Transcription elongation factor n=2 Tax=Erythrob... 93 4e-18 UniRef50_C5BTE2 Transcription elongation factor GreA n=1 Tax=Ter... 93 4e-18 UniRef50_Q4K5S3 Transcription elongation factor GreB n=3 Tax=Pse... 92 6e-18 UniRef50_A9BFC0 Transcription elongation factor greA n=12 Tax=Th... 92 6e-18 UniRef50_B2S1W7 Transcription elongation factor greA n=6 Tax=Tre... 92 6e-18 UniRef50_B4UMG4 GreA/GreB family elongation factor n=4 Tax=Anaer... 91 7e-18 UniRef50_B4D5K0 GreA/GreB family elongation factor n=1 Tax=Chtho... 91 9e-18 UniRef50_B2V1C0 Transcription elongation factor n=28 Tax=Clostri... 91 9e-18 UniRef50_D2QK34 GreA/GreB family elongation factor n=1 Tax=Spiro... 91 9e-18 UniRef50_Q04UP0 Transcription elongation factor n=6 Tax=Leptospi... 91 1e-17 UniRef50_B5Y9H5 Transcription elongation factor n=1 Tax=Coprothe... 91 1e-17 UniRef50_C7T958 Transcription elongation factor n=4 Tax=Lactobac... 91 1e-17 UniRef50_A6NZ08 Transcription elongation factor n=1 Tax=Bacteroi... 91 1e-17 UniRef50_C8W826 Transcription elongation factor n=7 Tax=Coriobac... 91 1e-17 UniRef50_B7CAB2 Transcription elongation factor n=5 Tax=Erysipel... 91 1e-17 UniRef50_Q848L1 GreA n=1 Tax=uncultured bacterium RepID=Q848L1_9... 91 1e-17 UniRef50_B0VIH5 Putative transcription elongation factor n=1 Tax... 91 1e-17 UniRef50_A0LES5 GreA/GreB family elongation factor n=1 Tax=Syntr... 91 1e-17 UniRef50_Q0B0N4 Transcription elongation factor greA n=6 Tax=Clo... 91 1e-17 UniRef50_B0P8A6 Transcription elongation factor n=1 Tax=Anaerotr... 90 2e-17 UniRef50_B9L0L0 Transcription elongation factor greA n=1 Tax=The... 90 2e-17 UniRef50_B3DVF3 Transcription elongation factor GreA fused to un... 90 3e-17 UniRef50_D1C6T4 Transcription elongation factor n=1 Tax=Sphaerob... 89 3e-17 UniRef50_D1CDC6 Transcription elongation factor n=1 Tax=Thermoba... 89 3e-17 UniRef50_Q88ZS9 Transcription elongation factor greA 1 n=7 Tax=L... 89 3e-17 UniRef50_B1XUH7 Transcription elongation factor GreB n=2 Tax=Pol... 89 3e-17 UniRef50_D0WJ76 Transcription elongation factor n=1 Tax=Slackia ... 89 4e-17 UniRef50_B0N6V6 Transcription elongation factor n=4 Tax=Bacteria... 89 4e-17 UniRef50_A6STV7 Transcription elongation factor GreB n=2 Tax=Oxa... 89 4e-17 UniRef50_A7HXN3 GreA/GreB family elongation factor n=1 Tax=Parvi... 88 7e-17 UniRef50_C7N7T1 Transcription elongation factor n=1 Tax=Slackia ... 88 8e-17 UniRef50_B3PM73 Transcription elongation factor greA n=1 Tax=Myc... 88 9e-17 UniRef50_UPI0001746370 transcript cleavage factor/unknown domain... 88 9e-17 UniRef50_C4ZAT8 Transcription elongation factor GreA n=21 Tax=Fi... 88 9e-17 UniRef50_A7VBG3 Putative uncharacterized protein n=1 Tax=Clostri... 88 1e-16 UniRef50_A4E9C2 Transcription elongation factor n=1 Tax=Collinse... 88 1e-16 UniRef50_A6SZ83 Transcription elongation factor, greA family n=2... 88 1e-16 UniRef50_P47524 Transcription elongation factor greA n=4 Tax=Myc... 88 1e-16 UniRef50_Q2G8D8 GreA/GreB family elongation factor n=4 Tax=cellu... 88 1e-16 UniRef50_B1ZZX3 GreA/GreB family elongation factor n=3 Tax=Verru... 87 2e-16 UniRef50_C4L6P4 GreA/GreB family elongation factor n=1 Tax=Exigu... 87 2e-16 UniRef50_D1R523 Putative uncharacterized protein n=1 Tax=Parachl... 87 2e-16 UniRef50_C6B1R3 GreA/GreB family elongation factor n=16 Tax=cell... 87 2e-16 UniRef50_B1ZQE9 GreA/GreB family elongation factor n=1 Tax=Opitu... 87 2e-16 UniRef50_B1I1G7 GreA/GreB family elongation factor n=1 Tax=Candi... 86 2e-16 UniRef50_B9XT30 GreA/GreB family elongation factor n=1 Tax=bacte... 86 2e-16 UniRef50_UPI00017427C8 transcription elongation factor GreA n=1 ... 86 3e-16 UniRef50_B9KMW2 Transcription elongation factor n=3 Tax=Rhodobac... 86 3e-16 UniRef50_D0KZQ0 Transcription elongation factor GreB n=1 Tax=Hal... 86 3e-16 UniRef50_A6X2G5 GreA/GreB family elongation factor n=2 Tax=Ochro... 86 4e-16 UniRef50_B9J7D6 Transcription elongation factor protein n=52 Tax... 86 5e-16 UniRef50_Q5SJG6 Anti-cleavage anti-GreA transcription factor Gfh... 85 6e-16 UniRef50_Q2SSM5 Transcription elongation factor greA n=6 Tax=Mol... 85 6e-16 UniRef50_A5D4X0 Putative uncharacterized protein n=1 Tax=Pelotom... 84 1e-15 UniRef50_A9NGN4 Transcription elongation factor greA n=7 Tax=Ach... 84 1e-15 UniRef50_Q88Q22 Transcription elongation factor, putative n=11 T... 84 2e-15 UniRef50_Q6MF39 Putative uncharacterized protein n=1 Tax=Candida... 84 2e-15 UniRef50_B4D3Z7 GreA/GreB family elongation factor n=1 Tax=Chtho... 83 2e-15 UniRef50_Q9Z7G4 Transcription elongation factor greA n=13 Tax=Ch... 83 3e-15 UniRef50_B2UNZ9 GreA/GreB family elongation factor n=1 Tax=Akker... 83 4e-15 UniRef50_UPI0001C31C12 transcription elongation factor GreA n=1 ... 81 9e-15 UniRef50_C6XVH8 Transcription elongation factor n=1 Tax=Pedobact... 81 1e-14 UniRef50_UPI0001746B72 nucleoside diphosphate kinase regulator p... 81 1e-14 UniRef50_B4RDE4 Transcription elongation factor GreA/GreB, famil... 81 1e-14 UniRef50_B6BTF1 GreA/GreB family elongation factor n=2 Tax=Betap... 80 2e-14 Sequences not found previously or not previously below threshold: >UniRef50_Q2LTP9 Transcription elongation factor n=2 Tax=Deltaproteobacteria RepID=Q2LTP9_SYNAS Length = 134 Score = 167 bits (424), Expect = 8e-41, Method: Composition-based stats. Identities = 61/136 (44%), Positives = 85/136 (62%), Gaps = 2/136 (1%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 M++ I + + D ER++ LLE A +L AEL A + EEMP DVVTMNS V Sbjct: 1 MNKRRIYVTEQDMERLEDLLETS--KKSEYARSLEAELVNAVVVPSEEMPPDVVTMNSCV 58 Query: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE 120 F +L+ G TLVYP + ++ ++SV+APVG+AL+GL VG +I W +P G L Sbjct: 59 CFEDLTTGNRETITLVYPGQANMASGRVSVLAPVGSALIGLSVGQTIEWPMPNGRKRRLR 118 Query: 121 VLELEYQPEAAGDYLL 136 ++E+ YQPEAAGD+ L Sbjct: 119 IVEVLYQPEAAGDFHL 134 >UniRef50_C5S652 GreA/GreB family elongation factor n=2 Tax=Proteobacteria RepID=C5S652_CHRVI Length = 171 Score = 166 bits (420), Expect = 2e-40, Method: Composition-based stats. Identities = 65/133 (48%), Positives = 86/133 (64%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 S+P II++ LDAER++ L+E P D L AEL RA++ P EMP +VV+MNS V+ Sbjct: 37 SQPKIILSSLDAERLENLIESLPRNAFPGMDELEAELARAEVVDPREMPPNVVSMNSTVR 96 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEV 121 FR +S E TLVYP M S ++S++APVG+ALLGL GD I W PGG + + Sbjct: 97 FRVMSTNEAFTLTLVYPKDMDASGGKISILAPVGSALLGLSSGDEIEWPKPGGGVLRVRI 156 Query: 122 LELEYQPEAAGDY 134 E+ YQPE AG+Y Sbjct: 157 EEVTYQPERAGEY 169 >UniRef50_P0AFW6 Regulator of nucleoside diphosphate kinase n=155 Tax=Enterobacteriaceae RepID=RNK_ECO57 Length = 136 Score = 160 bits (405), Expect = 1e-38, Method: Composition-based stats. Identities = 136/136 (100%), Positives = 136/136 (100%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV Sbjct: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 Query: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE 120 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE Sbjct: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE 120 Query: 121 VLELEYQPEAAGDYLL 136 VLELEYQPEAAGDYLL Sbjct: 121 VLELEYQPEAAGDYLL 136 >UniRef50_Q3BX42 Regulator of nucleoside diphosphate kinase n=9 Tax=Gammaproteobacteria RepID=Q3BX42_XANC5 Length = 146 Score = 158 bits (401), Expect = 4e-38, Method: Composition-based stats. Identities = 58/131 (44%), Positives = 84/131 (64%) Query: 4 PTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFR 63 P+I+++ D R++ LL+ PA+ P A AL+ EL RA++ P+++P DVVTM+SR++ Sbjct: 11 PSILVSSHDLARLEALLDSPAFNKHPAATALSDELGRARVLPPDQIPGDVVTMHSRIECE 70 Query: 64 NLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLE 123 + GE TLVYP + + ++SV+APVG+ALLGL VG SI W P G L V Sbjct: 71 DQLHGERHTLTLVYPHEADVQHGRISVLAPVGSALLGLSVGQSIDWRTPDGRDLRLRVTA 130 Query: 124 LEYQPEAAGDY 134 + QP AAGD+ Sbjct: 131 VHDQPAAAGDF 141 >UniRef50_A6VVR5 GreA/GreB family elongation factor n=15 Tax=Proteobacteria RepID=A6VVR5_MARMS Length = 137 Score = 158 bits (399), Expect = 8e-38, Method: Composition-based stats. Identities = 58/136 (42%), Positives = 88/136 (64%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 M RP I I+ LDA R++ +L+ +Y+ P D L E++RA++ P +MP ++VTMNS V Sbjct: 2 MQRPQITISSLDAVRLEKILDSLSYSQFPNKDDLQEEINRAEIVEPRDMPDNIVTMNSTV 61 Query: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE 120 F+ LS + +TLVYP + +SV+APVG+ALLGL+ GD I W P G + Sbjct: 62 TFKVLSSEKEFSKTLVYPKDANGAEDTVSVLAPVGSALLGLKEGDQIDWPKPNGDVLSVV 121 Query: 121 VLELEYQPEAAGDYLL 136 +++++YQPE AG++ L Sbjct: 122 IMKVDYQPERAGEFQL 137 >UniRef50_B5EI69 GreA/GreB family elongation factor n=6 Tax=Desulfuromonadales RepID=B5EI69_GEOBB Length = 143 Score = 154 bits (391), Expect = 5e-37, Method: Composition-based stats. Identities = 52/138 (37%), Positives = 86/138 (62%), Gaps = 4/138 (2%) Query: 2 SRPTIIINDLDAERIDILLEQPAY---AGLPIADALNAELDRAQMCSPEEMPHDVVTMNS 58 ++ +++ + D ER++ L+++ L EL RA++ P +P DV+TMNS Sbjct: 7 AQRQVVVTEFDMERLEALIDKARSTQTRDSKNLKELGEELVRAEVVDPAGIPPDVITMNS 66 Query: 59 RVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATH 118 +V ++L E V TLV+P + ++ ++S++APVG A++G R GD I W +PGG+ + Sbjct: 67 KVCLQDLDSEEELVYTLVFPNEADLASGKISILAPVGTAMIGFRTGDRITWPVPGGM-KN 125 Query: 119 LEVLELEYQPEAAGDYLL 136 L+V ++ YQPEAAGDY L Sbjct: 126 LKVKKILYQPEAAGDYHL 143 >UniRef50_A0LL17 GreA/GreB family elongation factor n=3 Tax=Bacteria RepID=A0LL17_SYNFM Length = 141 Score = 153 bits (387), Expect = 2e-36, Method: Composition-based stats. Identities = 50/140 (35%), Positives = 78/140 (55%), Gaps = 6/140 (4%) Query: 2 SRPTIIINDLDAERIDILLE-----QPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTM 56 R I ++D D +R++ L+E + L EL +A++ + +P D VTM Sbjct: 3 KRRKIYVSDYDMKRLEKLIELLSEDEWDDRDTKHLQVLEEELRKAEVVAARNIPRDTVTM 62 Query: 57 NSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVA 116 NS+V+ ++L G + LV+P + ++SV+AP+G AL+G VGD I W +P G Sbjct: 63 NSKVRVKDLDTGIETIYHLVFPGEADVKQNRISVLAPIGTALIGYAVGDVIQWNVPAGT- 121 Query: 117 THLEVLELEYQPEAAGDYLL 136 L + E+ YQPEAAGD+ L Sbjct: 122 KKLRIEEILYQPEAAGDFHL 141 >UniRef50_B8GS58 GreA/GreB family elongation factor n=22 Tax=Proteobacteria RepID=B8GS58_THISH Length = 137 Score = 153 bits (387), Expect = 2e-36, Method: Composition-based stats. Identities = 59/133 (44%), Positives = 86/133 (64%) Query: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKF 62 +P+I ++ LD +R++ LL+ L L AEL+RA + P ++P +VTMNSRV+F Sbjct: 4 QPSITLSSLDLDRLEHLLDSLPREALANHRQLLAELERANVVEPSQVPPTLVTMNSRVRF 63 Query: 63 RNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVL 122 R +G RTLVYP+ M ++SV+AP+G+ALLGL VGDSI W P G ++ ++ Sbjct: 64 RVEPEGREFQRTLVYPSGMDGDEEKISVLAPIGSALLGLSVGDSIAWPTPKGGEMNVRIM 123 Query: 123 ELEYQPEAAGDYL 135 E+ YQPEAAG+ Sbjct: 124 EILYQPEAAGEMH 136 >UniRef50_Q6MQZ8 Regulator of nucleoside diphosphate kinase n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MQZ8_BDEBA Length = 138 Score = 153 bits (387), Expect = 2e-36, Method: Composition-based stats. Identities = 58/135 (42%), Positives = 84/135 (62%), Gaps = 3/135 (2%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 + P I++ D D R+ L+ + P A+AL EL RA + + +E+P +VVTMNSRV+ Sbjct: 7 TEPRILVTDQDFHRLSALV---SQVEGPFAEALEEELSRANVIAQKEIPKNVVTMNSRVQ 63 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEV 121 F + G+ TLVYP +LS++APVG ALLGL VG I+W+LP G + L+V Sbjct: 64 FLDEVSGQESEMTLVYPQDAKLEEGRLSILAPVGIALLGLSVGQEINWKLPNGQSKKLKV 123 Query: 122 LELEYQPEAAGDYLL 136 + YQPEA+G++ L Sbjct: 124 QAVTYQPEASGNFDL 138 >UniRef50_Q1H3Z9 GreA/GreB family elongation factor n=1 Tax=Methylobacillus flagellatus KT RepID=Q1H3Z9_METFK Length = 138 Score = 146 bits (370), Expect = 2e-34, Method: Composition-based stats. Identities = 57/139 (41%), Positives = 83/139 (59%), Gaps = 4/139 (2%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIAD---ALNAELDRAQMCSPEEMPHDVVTMN 57 M + I + D +R+ ++EQ G P D L EL R++ E++ DVVTMN Sbjct: 1 MLQGAIQVTSFDMDRLFSMIEQLRKNGFPETDNLARLEDELARSEEVPSEQVGADVVTMN 60 Query: 58 SRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVAT 117 SRV R+ ++G TLV+P+ S ++SV+AP+G A+LG RVGD I W +PGG Sbjct: 61 SRVLLRDEANGHEMSCTLVFPSDADASANRISVVAPLGTAILGYRVGDVIDWAMPGG-VR 119 Query: 118 HLEVLELEYQPEAAGDYLL 136 +L+++YQPEAAGD+ L Sbjct: 120 QYRILKIDYQPEAAGDFHL 138 >UniRef50_Q11P04 Transcription elongation factor n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11P04_CYTH3 Length = 149 Score = 145 bits (367), Expect = 4e-34, Method: Composition-based stats. Identities = 46/135 (34%), Positives = 73/135 (54%), Gaps = 4/135 (2%) Query: 5 TIIINDLDAERIDILLEQPAYAGLP---IADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 IIN LD RI + + A++L EL ++ PEE+P++VVTM+S V Sbjct: 16 RTIINKLDYSRIQQCINEAKQFKSISVVEANSLMNELKLGKLVEPEEIPNNVVTMHSIVT 75 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEV 121 + + LVYP K N ++S+ +P+ AL+G ++GD I W +P G+ +++ Sbjct: 76 IVFMDSNKRVEFQLVYPDKADVKNNKISIFSPIATALIGYQIGDEIEWCVPAGMT-KIKI 134 Query: 122 LELEYQPEAAGDYLL 136 + YQPEAAG + L Sbjct: 135 ESIAYQPEAAGHFNL 149 >UniRef50_C6RP41 GreA/GreB family elongation factor n=4 Tax=Acinetobacter RepID=C6RP41_ACIRA Length = 134 Score = 143 bits (361), Expect = 2e-33, Method: Composition-based stats. Identities = 50/134 (37%), Positives = 74/134 (55%), Gaps = 1/134 (0%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 M++P III+ D R++ +LE + + L EL RA++ P E+P +VV+MN+RV Sbjct: 1 MAKPNIIISSQDLHRLETMLEHQS-HMTQTIEHLEDELARAEVVEPHEIPANVVSMNTRV 59 Query: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE 120 E LVYP Q++V+AP+GAA+LGL G I W P G ++ Sbjct: 60 LITIAPSTEPTEIQLVYPHDFRGDKGQVNVLAPIGAAILGLAEGQEIEWPQPDGHLMKVK 119 Query: 121 VLELEYQPEAAGDY 134 + ++ YQPE GDY Sbjct: 120 IEKVLYQPEREGDY 133 >UniRef50_B0SEQ9 Transcription elongation factor n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SEQ9_LEPBA Length = 138 Score = 141 bits (356), Expect = 8e-33, Method: Composition-based stats. Identities = 46/137 (33%), Positives = 76/137 (55%), Gaps = 3/137 (2%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAG--LPIADALNAELDRAQMCSPEEMPHDVVTMNSR 59 ++ I I +LD R+ ++ + + L E++RAQ +++P +VVTMNS Sbjct: 3 TKKKISITNLDYIRLKKMILEYSKRNKTDANVQDLLGEIERAQKVDSKQIPSNVVTMNSV 62 Query: 60 VKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHL 119 ++ +NL E + LVYP Q+S++AP+ A +G + GD I W +P GV Sbjct: 63 IEIKNLEGIEFKEFRLVYPEDSNLDQNQISILAPIATASIGYKTGDVIFWNVPDGVYR-F 121 Query: 120 EVLELEYQPEAAGDYLL 136 ++ E++YQPEA GD+ L Sbjct: 122 QITEIKYQPEANGDFHL 138 >UniRef50_A4XNX9 GreA/GreB family elongation factor n=16 Tax=Bacteria RepID=A4XNX9_PSEMY Length = 135 Score = 140 bits (354), Expect = 1e-32, Method: Composition-based stats. Identities = 64/132 (48%), Positives = 81/132 (61%), Gaps = 2/132 (1%) Query: 4 PTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFR 63 P I I LD +R++ LL+ G P A AL AELDRA++ +E+P +VTMNSRV R Sbjct: 5 PAITITRLDLQRLERLLDSLDEFG-PGAAALQAELDRAEVVGLDEVPAGLVTMNSRVHCR 63 Query: 64 NLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLE 123 S G+ TLVYP +S++APVG+ALLGL VG I W PGG L +L Sbjct: 64 EESSGKDYHLTLVYPQDAG-GEGTVSILAPVGSALLGLSVGQHIDWPAPGGKQLKLTLLA 122 Query: 124 LEYQPEAAGDYL 135 +EYQPEAAG+Y Sbjct: 123 VEYQPEAAGEYD 134 >UniRef50_Q7MD62 Transcription elongation factor n=10 Tax=Proteobacteria RepID=Q7MD62_VIBVY Length = 135 Score = 140 bits (354), Expect = 1e-32, Method: Composition-based stats. Identities = 57/132 (43%), Positives = 87/132 (65%), Gaps = 2/132 (1%) Query: 5 TIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRN 64 +I ++ LD +RI LLE+ A P + L ELDRA + +P++MP ++VTMNS V+F Sbjct: 6 SICVSTLDMDRISALLEKMAN-LSPELEKLENELDRANVLAPQQMPDNIVTMNSTVRFTF 64 Query: 65 LSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 + +V +TLVYP ++ + + +S+ APVG+ALLGL VG + W +PGG +E+LE+ Sbjct: 65 VGSDKVMEKTLVYPDQVRNPDD-VSIFAPVGSALLGLSVGQQLTWPMPGGAERTIEILEV 123 Query: 125 EYQPEAAGDYLL 136 YQPE G++ L Sbjct: 124 TYQPERMGEFHL 135 >UniRef50_B9MBQ3 GreA/GreB family elongation factor n=6 Tax=Betaproteobacteria RepID=B9MBQ3_DIAST Length = 135 Score = 140 bits (353), Expect = 2e-32, Method: Composition-based stats. Identities = 62/134 (46%), Positives = 82/134 (61%), Gaps = 2/134 (1%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 +P II++ LD ERI+ LLE+ P +AL AELDRA + P++MP +VVTMNS V+ Sbjct: 3 RKPHIILSSLDLERIEALLEKQTAP-FPGREALEAELDRADVFDPKDMPPNVVTMNSTVR 61 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEV 121 F L G+ TLVYP +M S ++SV APVG ALLGL VGD P G + V Sbjct: 62 FTLLETGKTNTLTLVYPKEMDGSGDKVSVFAPVGIALLGLGVGDEFQMPSPTG-QVTVRV 120 Query: 122 LELEYQPEAAGDYL 135 +++QPE AG+ Sbjct: 121 DAIDFQPENAGELH 134 >UniRef50_B9NGJ6 Predicted protein n=12 Tax=cellular organisms RepID=B9NGJ6_POPTR Length = 145 Score = 139 bits (352), Expect = 2e-32, Method: Composition-based stats. Identities = 55/136 (40%), Positives = 85/136 (62%), Gaps = 3/136 (2%) Query: 2 SRP-TIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 SRP T+ + +LD R++ + + A L + L+A L+RA + SP+ +P DVVTMNSRV Sbjct: 12 SRPATLYLTELDVTRLEGIASRAGTAELD--EMLDALLERAAIVSPDAIPKDVVTMNSRV 69 Query: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE 120 + + R TLVYP + +LSV++P+G ALLG R GD++ + LP G A + Sbjct: 70 VCALEGEAKPRDWTLVYPDDADLATGRLSVLSPIGQALLGARSGDTVDYRLPDGRAQRVT 129 Query: 121 VLELEYQPEAAGDYLL 136 ++E+ +QPEA+G + L Sbjct: 130 IVEIAFQPEASGQFTL 145 >UniRef50_A9GAI2 Regulator of nucleoside diphosphate kinase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GAI2_SORC5 Length = 140 Score = 139 bits (351), Expect = 3e-32, Method: Composition-based stats. Identities = 48/135 (35%), Positives = 74/135 (54%), Gaps = 4/135 (2%) Query: 5 TIIINDLDAERIDILLEQPAYA---GLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 I++ + D +R+ LLE P +AL E++RA + P ++P +VVTMNSRV+ Sbjct: 7 PIVLTEFDRDRLARLLEALRARPGGDSPNLEALEIEIERADVVKPADIPPNVVTMNSRVE 66 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEV 121 +L E T+V+P + ++SV+AP+G ALLG R D + W P L + Sbjct: 67 LVDLDTEERLCVTVVFPGNADVKSGRISVLAPMGLALLGCREADEVEWPTPS-RTRRLRI 125 Query: 122 LELEYQPEAAGDYLL 136 + YQPEA+G + L Sbjct: 126 ERIAYQPEASGRFDL 140 >UniRef50_B5JTX6 Transcription elongation factor n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JTX6_9GAMM Length = 138 Score = 138 bits (349), Expect = 4e-32, Method: Composition-based stats. Identities = 53/135 (39%), Positives = 80/135 (59%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 + P I + +LD RI+ LLE+ L EL R ++ S +E+ DVVTMNSRVK Sbjct: 4 THPPITLPELDVARIESLLEKLDLKAKNNHTELFEELYRCRIVSSQEVSPDVVTMNSRVK 63 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEV 121 + L + TL YP +++ ++ +S++AP+G+A++GL VG I W LP G L + Sbjct: 64 YTRLDTQQQSTLTLCYPDQISRADDAVSILAPIGSAIIGLSVGQIIDWPLPNGKNAPLRI 123 Query: 122 LELEYQPEAAGDYLL 136 EL +QPE +G+Y L Sbjct: 124 DELLFQPERSGNYTL 138 >UniRef50_Q13WN5 GreA/GreB family elongation factor n=50 Tax=Burkholderia RepID=Q13WN5_BURXL Length = 136 Score = 137 bits (346), Expect = 9e-32, Method: Composition-based stats. Identities = 44/135 (32%), Positives = 72/135 (53%), Gaps = 1/135 (0%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 T + +LD R++ A + D L+ L+RA + E+P +VVTMNS+ Sbjct: 3 KTKTCYLTELDVARLEKHA-AAPGADARLQDMLDDVLERAVIVDSHEIPANVVTMNSQAT 61 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEV 121 + + GE T+VYP ++ +L+V +P G ALLG + G+ I + P G L++ Sbjct: 62 LVDETSGEHMTWTVVYPPNADFAHGRLNVFSPAGLALLGAKRGERIRFTPPSGTEKVLKL 121 Query: 122 LELEYQPEAAGDYLL 136 ++ +QPEAA D+ L Sbjct: 122 EKILFQPEAADDFTL 136 >UniRef50_B8G0E1 GreA/GreB family elongation factor n=2 Tax=Desulfitobacterium hafniense RepID=B8G0E1_DESHD Length = 138 Score = 137 bits (346), Expect = 9e-32, Method: Composition-based stats. Identities = 56/140 (40%), Positives = 79/140 (56%), Gaps = 6/140 (4%) Query: 1 MSRPTIIINDLDAERIDILLEQPAY----AGLPIADALNAELDRAQMCSPEEMPHDVVTM 56 MSR I I +D ER+ L+ + L EL+ A + E++P + +TM Sbjct: 1 MSR-KISITAVDRERLLKLINKEREFGSAKNKDYLKDLEHELNGADVVPSEKIPGNAITM 59 Query: 57 NSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVA 116 NSR+ ++L GE V TLVYP ++S++APVG A+LG GD I W++PGGV Sbjct: 60 NSRILLKDLETGEETVYTLVYPEDADLLEDKISILAPVGTAILGYLEGDIIDWKVPGGVV 119 Query: 117 THLEVLELEYQPEAAGDYLL 136 +V ++ YQPEAAGDY L Sbjct: 120 R-FKVEKILYQPEAAGDYHL 138 >UniRef50_Q3K4S3 Regulator of nucleoside diphosphate kinase n=2 Tax=Pseudomonas fluorescens RepID=Q3K4S3_PSEPF Length = 136 Score = 134 bits (339), Expect = 7e-31, Method: Composition-based stats. Identities = 60/135 (44%), Positives = 81/135 (60%), Gaps = 2/135 (1%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRA-QMCSPEEMPHDVVTMNSR 59 M+ P+I + LD +R++ L++ LP AL ELDRA + +E+P DVVTMNSR Sbjct: 1 MTAPSITLTRLDVQRLERLIDSLDDT-LPGVIALQTELDRADTLVGHDEVPADVVTMNSR 59 Query: 60 VKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHL 119 V R S G+ TLVYP ++S++APVG+ALLGL+VG I W PGG L Sbjct: 60 VHCREESSGKDYHLTLVYPKHANADEGKVSILAPVGSALLGLKVGQHIDWPAPGGKTLKL 119 Query: 120 EVLELEYQPEAAGDY 134 +LE+E QP GD+ Sbjct: 120 TLLEVESQPSNGGDF 134 >UniRef50_A9MBQ4 GreA/GreB family elongation factor n=36 Tax=Brucella RepID=A9MBQ4_BRUC2 Length = 169 Score = 134 bits (338), Expect = 8e-31, Method: Composition-based stats. Identities = 46/123 (37%), Positives = 73/123 (59%), Gaps = 1/123 (0%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 +P I+++++D ER+ L + IA+ L AELDRA++ + + +P +VV M S V+ Sbjct: 7 KKPNIVVSEVDYERLMGLASNASERFEEIAEELMAELDRAKVVTAKRIPENVVQMGSTVE 66 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEV 121 FR +DG R TLVYP + + ++S++ P+G AL+GL G SI W G L V Sbjct: 67 FR-ANDGHERRVTLVYPGEADIAKNRISILTPIGTALIGLAPGQSISWTARDGKQHELNV 125 Query: 122 LEL 124 L++ Sbjct: 126 LKV 128 >UniRef50_C9P6Y2 Regulator of nucleoside diphosphate kinase n=1 Tax=Vibrio metschnikovii CIP 69.14 RepID=C9P6Y2_VIBME Length = 136 Score = 133 bits (336), Expect = 2e-30, Method: Composition-based stats. Identities = 54/131 (41%), Positives = 81/131 (61%), Gaps = 2/131 (1%) Query: 5 TIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRN 64 II++ LD +RI L+++ + L ELDRA + +PEE+P DVVTMNS VKF+ Sbjct: 7 AIIVSTLDMDRISALMDKLP-KLSKELERLENELDRATVLNPEEIPADVVTMNSTVKFKF 65 Query: 65 LSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 +V +TLVYP + ++ +S+ APVG+ALLGL G + W +P GV +E++++ Sbjct: 66 QGSDDVMQKTLVYPHDVKGNDD-ISIFAPVGSALLGLSKGQQLTWPMPNGVERTIEIIDI 124 Query: 125 EYQPEAAGDYL 135 QPE G+Y Sbjct: 125 IDQPERNGEYN 135 >UniRef50_Q3SMM4 GreA/GreB family elongation factor n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SMM4_THIDA Length = 138 Score = 133 bits (336), Expect = 2e-30, Method: Composition-based stats. Identities = 62/134 (46%), Positives = 81/134 (60%), Gaps = 1/134 (0%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 +RP I +++ D ER++ +L LP A+AL ELDRA++ PE MP DVVTMNSR++ Sbjct: 5 TRPAITVSERDLERLEDMLAGLPD-DLPGAEALRDELDRAEILRPEAMPADVVTMNSRIR 63 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEV 121 F G+ TLVYP T S QL V P G A+LGL VG I W+ P G + Sbjct: 64 FVVEPAGKEMEMTLVYPRDFTGSPDQLPVTTPAGIAVLGLAVGQEIEWQAPNGQKVGARI 123 Query: 122 LELEYQPEAAGDYL 135 ++L YQPE AGDY+ Sbjct: 124 VDLAYQPERAGDYM 137 >UniRef50_B2SQJ5 Regulator of nucleoside diphosphate kinase n=8 Tax=Xanthomonadaceae RepID=B2SQJ5_XANOP Length = 215 Score = 133 bits (336), Expect = 2e-30, Method: Composition-based stats. Identities = 47/130 (36%), Positives = 73/130 (56%) Query: 4 PTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFR 63 P+ +++ D R + LL+ P++ P A AL+ EL RA++ P+++ DVVTM+SR++ Sbjct: 83 PSTLVSSHDLARREALLDSPSFNKHPAATALSDELGRARVLPPDQIRGDVVTMHSRIECE 142 Query: 64 NLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLE 123 + G V+P + + ++ V+APVG+AL GL VG I W P G L Sbjct: 143 DQLHGGRHTLPPVHPHEADVQHGRICVLAPVGSALGGLSVGQRIDWRTPDGRDLRLRATA 202 Query: 124 LEYQPEAAGD 133 + QP AAGD Sbjct: 203 VHDQPTAAGD 212 >UniRef50_C6X5Q8 Transcription elongation factor n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6X5Q8_FLAB3 Length = 170 Score = 132 bits (334), Expect = 3e-30, Method: Composition-based stats. Identities = 48/136 (35%), Positives = 71/136 (52%), Gaps = 4/136 (2%) Query: 4 PTIIINDLDAERIDILLEQPAYAG---LPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 III D+ RI + A+ L EL A++ ++P DVVTMNS V Sbjct: 36 KQIIITKQDSTRIHKSIMDAKKNNSIKAEDAERLLRELHSAKIVESADIPADVVTMNSVV 95 Query: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE 120 K ++ V +VYP + + ++S+ +PV AAL+G V D I W +P G+ + Sbjct: 96 KIHFENNKTVTEFKIVYPEQANIKDRKISIFSPVAAALIGYSVNDEIDWIVPSGMTKII- 154 Query: 121 VLELEYQPEAAGDYLL 136 + E+ YQPEAAGD+ L Sbjct: 155 IDEIIYQPEAAGDFDL 170 >UniRef50_Q4KB20 Acetyltransferase, GNAT family family n=9 Tax=Bacteria RepID=Q4KB20_PSEF5 Length = 379 Score = 132 bits (334), Expect = 3e-30, Method: Composition-based stats. Identities = 44/131 (33%), Positives = 71/131 (54%), Gaps = 6/131 (4%) Query: 6 IIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNL 65 I I ++D R++ L+ + P L EL+RA + P+++ +V+TMNSR + Sbjct: 255 IYITEIDKARLESLI---VFEQGPTIVELEHELERAIVVKPQQVARNVITMNSRALLQLD 311 Query: 66 SDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 E LVYP + + SV + +GAA+LG + GD+I W + +E+ ++ Sbjct: 312 D--EEIEVALVYPEDADSTAGKHSVYSDIGAAILGYQEGDTIDWRISD-RTRRIEIRKVL 368 Query: 126 YQPEAAGDYLL 136 YQPEAAGD+ L Sbjct: 369 YQPEAAGDFHL 379 >UniRef50_A6C278 Nucleoside diphosphate kinase regulator protein, putative n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C278_9PLAN Length = 137 Score = 132 bits (334), Expect = 3e-30, Method: Composition-based stats. Identities = 49/135 (36%), Positives = 71/135 (52%), Gaps = 4/135 (2%) Query: 1 MSRPTIIINDLDAERIDILLEQ---PAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMN 57 M + I I D +R+ LL A P L+AEL A + EE+P D+VTMN Sbjct: 1 MPQQKIFITKTDYQRLQNLLLSDFTQAIGNKPYLSGLHAELAVAHIVESEEIPADIVTMN 60 Query: 58 SRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVAT 117 S V+ R+L E+ TLVYP +LS++ P+G A+LG R+GD + G + Sbjct: 61 STVRLRDLETDELETYTLVYPQDANIKEGKLSILTPIGTAILGYRIGDQLRSRALAGGS- 119 Query: 118 HLEVLELEYQPEAAG 132 + V E+ +QPE +G Sbjct: 120 KIRVEEILFQPERSG 134 >UniRef50_Q74EX3 Nucleoside diphosphate kinase regulator protein, putative n=1 Tax=Geobacter sulfurreducens RepID=Q74EX3_GEOSL Length = 135 Score = 132 bits (333), Expect = 3e-30, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 72/134 (53%), Gaps = 1/134 (0%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 M I + + D R++ +L+ + L EL A + P+++P +VVTMNSRV Sbjct: 1 MDTRAIYVTEDDLSRLEEILDTIPFRDRKDLQKLEDELASAMIVDPKDVPPNVVTMNSRV 60 Query: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE 120 K R+L + +LV+P + ++S+++P+G A+LG GD++ + A + Sbjct: 61 KLRDLRADKEMTISLVFPNDANIAEGKISILSPIGTAILGFGAGDTLDLAVRS-FAKKIR 119 Query: 121 VLELEYQPEAAGDY 134 + E+ YQP AAG + Sbjct: 120 IEEVLYQPGAAGSH 133 >UniRef50_A6X582 GreA/GreB family elongation factor n=3 Tax=Rhizobiales RepID=A6X582_OCHA4 Length = 142 Score = 132 bits (332), Expect = 4e-30, Method: Composition-based stats. Identities = 44/124 (35%), Positives = 72/124 (58%), Gaps = 1/124 (0%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 +P I+++++D ER+ L + IA+ L ELDRA++ + +P +V+ M S V+ Sbjct: 7 KKPNIVVSEIDYERLMGLATNVSERLEEIAEELMVELDRAKVVPAKRLPQNVIHMGSTVE 66 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEV 121 FR+ +DG+ R TLVYP + + ++S++ P+G AL+GL G SI W G L V Sbjct: 67 FRS-NDGQERRVTLVYPGEADIAQGKISILTPIGTALIGLAPGQSISWTARDGKQHELNV 125 Query: 122 LELE 125 L + Sbjct: 126 LSVS 129 >UniRef50_C0N448 Putative uncharacterized protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N448_9GAMM Length = 137 Score = 131 bits (331), Expect = 6e-30, Method: Composition-based stats. Identities = 41/135 (30%), Positives = 68/135 (50%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 + +P I + LD R++ L+ P+ +L EL+RA++ ++P D+V+MNS V Sbjct: 2 IHQPDIYVASLDLIRLEDLINTLWNKHSPVRLSLEDELERAKIIDSFQLPDDIVSMNSTV 61 Query: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE 120 + TLVYP M + LS+++P+G ALLG++ G+ +W G Sbjct: 62 ELWVTKSDFPVYMTLVYPYGMKKDGSTLSILSPIGTALLGIKQGEEFYWPGRDGRNIKAR 121 Query: 121 VLELEYQPEAAGDYL 135 + + YQPE Y Sbjct: 122 LENILYQPERERHYN 136 >UniRef50_C3X2V3 GreA/GreB family elongation factor n=2 Tax=Oxalobacter formigenes RepID=C3X2V3_OXAFO Length = 140 Score = 131 bits (331), Expect = 6e-30, Method: Composition-based stats. Identities = 51/124 (41%), Positives = 73/124 (58%), Gaps = 1/124 (0%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 RP I + D ER++ +L Y +P L ELDRA + PEE+P DV+T+NS + Sbjct: 13 ERPPITVTTHDYERLEQMLRNAKYRNIPGMADLQRELDRANVVEPEELPEDVITINSTAR 72 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEV 121 F + + TLVYP K + ++SV+APVG+ALLGL G SI W++PG L V Sbjct: 73 FIDDCTNDQYEITLVYPDKADGVS-KISVLAPVGSALLGLSAGQSIPWQVPGRQKLQLRV 131 Query: 122 LELE 125 L+++ Sbjct: 132 LDVK 135 >UniRef50_A5F052 Regulator of nucleoside diphosphate kinase n=31 Tax=Vibrio RepID=A5F052_VIBC3 Length = 135 Score = 130 bits (328), Expect = 1e-29, Method: Composition-based stats. Identities = 60/131 (45%), Positives = 83/131 (63%), Gaps = 2/131 (1%) Query: 5 TIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRN 64 TI+++ D +RI L++ A P + L ELDRA + P EMP DVVTMNS V+F+ Sbjct: 6 TIVVSTRDMDRISQLMDNLA-TLSPELEKLEEELDRATVLEPAEMPEDVVTMNSTVRFKF 64 Query: 65 LSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 L EV +TLVYP + S +S+ APVG+ALLGL VG + W +PGG LE++++ Sbjct: 65 LGSDEVMEKTLVYPNDVKSSAD-VSIFAPVGSALLGLAVGQQLAWPMPGGTLKTLEIIDI 123 Query: 125 EYQPEAAGDYL 135 YQPE AG++ Sbjct: 124 VYQPERAGEFH 134 >UniRef50_D1SYS0 GreA/GreB family elongation factor n=1 Tax=Acidovorax avenae subsp. avenae ATCC 19860 RepID=D1SYS0_9BURK Length = 139 Score = 129 bits (325), Expect = 3e-29, Method: Composition-based stats. Identities = 50/138 (36%), Positives = 69/138 (50%), Gaps = 9/138 (6%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 + P ++ DLD R+ L + L L A + + DVVTMNSRV Sbjct: 5 LPHPERVLTDLDFARLSKLAARQLPPAS-----LADLLATADVTGSRAVDADVVTMNSRV 59 Query: 61 KFR----NLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVA 116 + + +DG +V TL YP + ++SV++PVG +LLGLRVGD W P G Sbjct: 60 ELEGSGTDGADGARQVLTLCYPQDADAAAGRVSVLSPVGCSLLGLRVGDVAAWRTPQGED 119 Query: 117 THLEVLELEYQPEAAGDY 134 V + +QPEAAGDY Sbjct: 120 CRATVAAILHQPEAAGDY 137 >UniRef50_A6GQE5 Nucleoside diphosphate kinase regulator n=1 Tax=Limnobacter sp. MED105 RepID=A6GQE5_9BURK Length = 122 Score = 129 bits (324), Expect = 4e-29, Method: Composition-based stats. Identities = 48/128 (37%), Positives = 64/128 (50%), Gaps = 7/128 (5%) Query: 8 INDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSD 67 +N+LD RI L P LNA LD A+ P+++P DVVTMNS Sbjct: 1 MNELDLARISKL-------NAPFPPELNAALDNAEFIKPQDIPADVVTMNSLFTIVETES 53 Query: 68 GEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEYQ 127 G L YP+ + +SV++PVGA+LLG + G W P G V E+ +Q Sbjct: 54 GSTNKLMLCYPSDAEPAKGYISVLSPVGASLLGRKAGTVAQWATPNGEQHFAVVKEILFQ 113 Query: 128 PEAAGDYL 135 PEA+GDY Sbjct: 114 PEASGDYT 121 >UniRef50_B3PF63 Regulator of nucleoside diphosphate kinase n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PF63_CELJU Length = 180 Score = 128 bits (323), Expect = 4e-29, Method: Composition-based stats. Identities = 44/121 (36%), Positives = 77/121 (63%), Gaps = 3/121 (2%) Query: 5 TIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRN 64 +++I++ D +R+ L+E P A+AL+ E+ RA + + ++P DVV M+S V F + Sbjct: 60 SLVISNSDYQRLVQLIE---DNDSPAAEALDIEIGRATLVADAQLPADVVAMDSEVTFED 116 Query: 65 LSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 L GE + LV+PA+ ++S+++PVG+AL+GLR+G SI W +P G L+V+ + Sbjct: 117 LDSGEQKTIQLVFPAQANVDQLKISILSPVGSALIGLRIGSSIDWPVPQGKVRRLKVIAV 176 Query: 125 E 125 + Sbjct: 177 K 177 >UniRef50_A1TUC9 GreA/GreB family elongation factor n=4 Tax=Burkholderiales RepID=A1TUC9_ACIAC Length = 136 Score = 127 bits (320), Expect = 1e-28, Method: Composition-based stats. Identities = 48/128 (37%), Positives = 70/128 (54%), Gaps = 5/128 (3%) Query: 7 IINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLS 66 ++ DLD R+ L Q P +L L+ A + S + DVVTM SRV+ + + Sbjct: 12 VLTDLDFARLSRLASQQ-----PAPPSLADLLENADVTSSRTVEADVVTMYSRVELVDTA 66 Query: 67 DGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 G +V T+ YP + +SV++PVG++LLGLRVG + W P G A V +++ Sbjct: 67 TGARQVLTICYPRDADLAAGFVSVLSPVGSSLLGLRVGQTARWCTPRGEACEATVAGIQH 126 Query: 127 QPEAAGDY 134 QPEA GDY Sbjct: 127 QPEAEGDY 134 >UniRef50_A5VGM9 GreA/GreB family elongation factor n=1 Tax=Sphingomonas wittichii RW1 RepID=A5VGM9_SPHWW Length = 137 Score = 126 bits (316), Expect = 3e-28, Method: Composition-based stats. Identities = 42/130 (32%), Positives = 67/130 (51%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 RP I + D +A+ + L A ++ L EL RA + + +P D+VTM+S V+ Sbjct: 8 RRPPIHMIDSEADILADLATSAATRLPQVSQLLLEELGRATIHKADRIPGDIVTMHSVVQ 67 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEV 121 F + + G+ LVYP + ++S++ PVGA L+GLR G SI W G L + Sbjct: 68 FTDAASGKEHRYQLVYPKDADIAEGRISILTPVGAGLIGLRAGQSILWPDRDGHERLLTI 127 Query: 122 LELEYQPEAA 131 ++ + AA Sbjct: 128 AKVSRESLAA 137 >UniRef50_C6VSR5 GreA/GreB family elongation factor n=2 Tax=Sphingobacteriales RepID=C6VSR5_DYAFD Length = 134 Score = 125 bits (314), Expect = 4e-28, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 62/125 (49%), Gaps = 1/125 (0%) Query: 5 TIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRN 64 +I+ D + + + +L EL+RA + E+P + +NS VK R Sbjct: 7 PVILGKDDFKLLKQFAQTFPDNNSSETMSLAYELNRAVVVEDNELPAGSIRLNSYVKVRE 66 Query: 65 LSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 + + ++V P + ++S++ P+GAAL+GL G+++ W++P G ++L++ Sbjct: 67 TTTNKEMAFSIVMPKDADIAKQRISILTPMGAALIGLCKGETVEWKMPAG-IRRFKILDV 125 Query: 125 EYQPE 129 Y E Sbjct: 126 WYDQE 130 >UniRef50_B8IFL5 GreA/GreB family elongation factor n=8 Tax=Methylobacterium RepID=B8IFL5_METNO Length = 141 Score = 124 bits (312), Expect = 1e-27, Method: Composition-based stats. Identities = 44/123 (35%), Positives = 65/123 (52%) Query: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKF 62 +P I + D ER+ L +A L ELDRAQ+ + V M +V+F Sbjct: 14 KPRIKMTVEDHERLSALAAAAQDRMPDVASCLADELDRAQIVAGRGRLPPFVRMGCQVEF 73 Query: 63 RNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVL 122 R+ + G V++ TLVYP + ++SV+ P+GAAL+GL G SI WE G+ L VL Sbjct: 74 RDDTTGRVQIVTLVYPGEANIEQGKISVLTPIGAALIGLSTGQSITWETRSGLTKSLTVL 133 Query: 123 ELE 125 ++ Sbjct: 134 DVR 136 >UniRef50_B9KH08 Transcription elongation factor n=9 Tax=Rickettsiales RepID=B9KH08_ANAMF Length = 174 Score = 124 bits (311), Expect = 1e-27, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 12/137 (8%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIAD--------ALNAELDRAQMCSPEEMPHDV 53 RP II + DA + L E Y L ++ RA++ E+ D Sbjct: 37 ERPKIIKSISDARELGDLSENAEYHAARERQGLVESKIMELESKRSRAEVIDVSELSGDT 96 Query: 54 VTMNSRVKF----RNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHW 109 V + V V +V + S +S+ +P+ +LLG R GDS+ Sbjct: 97 VMFGATVTVSVYDEQTDSTGVMQYQIVGEYEADVSKNMISIKSPLVLSLLGRREGDSVEV 156 Query: 110 ELPGGVATHLEVLELEY 126 + P G +++++E+ Sbjct: 157 KTPRGDYKIYQIMKIEF 173 >UniRef50_Q3SU57 GreA/GreB family elongation factor n=9 Tax=Bradyrhizobiaceae RepID=Q3SU57_NITWN Length = 151 Score = 123 bits (310), Expect = 1e-27, Method: Composition-based stats. Identities = 43/139 (30%), Positives = 66/139 (47%), Gaps = 11/139 (7%) Query: 4 PTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPE----------EMPHDV 53 P I I+ D +R+ L E A+ L E+DRA++ + ++ Sbjct: 11 PAIAISAHDIDRLRHLAEAAIEKYPATAEFLAREIDRAEIIPADGSLLDDTRDQRWKVNL 70 Query: 54 VTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPG 113 VTM S V F + G+ R TLVYP ++S+++P+GAAL+GL G SI ++ P Sbjct: 71 VTMQSEVTFIDDVSGQKRRVTLVYPEDADVDAGKISILSPIGAALIGLSAGQSIEFQTPS 130 Query: 114 GVATHLEVLEL-EYQPEAA 131 G L V+ + Y P Sbjct: 131 GGWRSLTVIAVWSYWPRPE 149 >UniRef50_A5V983 GreA/GreB family elongation factor n=1 Tax=Sphingomonas wittichii RW1 RepID=A5V983_SPHWW Length = 166 Score = 123 bits (310), Expect = 2e-27, Method: Composition-based stats. Identities = 43/130 (33%), Positives = 66/130 (50%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 RP I + D +AE + + +++ L E+DRA + +P DVVTM+S V+ Sbjct: 37 RRPAIHMIDSEAETLANMAVAAEERIPQVSELLLEEIDRATLYKAARIPADVVTMHSHVE 96 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEV 121 F + ++G R LVYP ++S++ VGA L+GLR G SI W G L + Sbjct: 97 FVDEANGTSRTVQLVYPKDADIDAGRVSILTLVGAGLIGLREGQSILWPGRDGHRRLLTI 156 Query: 122 LELEYQPEAA 131 + + EAA Sbjct: 157 TRVSREAEAA 166 >UniRef50_Q5P744 Transcription elongation factor n=3 Tax=Proteobacteria RepID=Q5P744_AZOSE Length = 158 Score = 122 bits (307), Expect = 3e-27, Method: Composition-based stats. Identities = 47/127 (37%), Positives = 69/127 (54%), Gaps = 9/127 (7%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 M+ +I+ D D R+ + L AEL+RA + P+ +P VVTM+SRV Sbjct: 34 MNSEHLILTDNDFVRLMAM---------QPGPQLRAELERAVVVPPDFLPRHVVTMHSRV 84 Query: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE 120 ++ + + GE R +VYP + + ++SV APVGAALLGL V I W+ P G L Sbjct: 85 RYLDEASGEQREIQVVYPEEADVAAGKVSVFAPVGAALLGLSVDQVIEWDFPRGPRRRLR 144 Query: 121 VLELEYQ 127 V E+ +Q Sbjct: 145 VEEVLHQ 151 >UniRef50_P64276 Transcription elongation factor greA n=48 Tax=delta/epsilon subdivisions RepID=GREA_HELPJ Length = 164 Score = 120 bits (302), Expect = 1e-26, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 61/136 (44%), Gaps = 11/136 (8%) Query: 1 MSRPTIIINDLDAER-IDILLEQPAYAGLPIADA--------LNAELDRAQMCSPEEMPH 51 + RP I + ++D R L E Y L+ + AQ+ P + H Sbjct: 24 VERPNI-VKEIDIARGHGDLKENAEYHAAKEKQRFIEARIVDLSEIVANAQVIDPSALAH 82 Query: 52 DVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWEL 111 + V+ S +K NL + + T+V + + +S +P+ +L+G GD++ +L Sbjct: 83 NKVSFGSTIKILNLDNDKEFSYTIVGSVESDPAKGLISFGSPIAKSLIGKSKGDAVSIQL 142 Query: 112 PGGVATHLEVLELEYQ 127 P G + E+L++ Y+ Sbjct: 143 PNGES-DFEILDIYYK 157 >UniRef50_A8LN19 GreA/GreB family elongation factor n=8 Tax=Alphaproteobacteria RepID=A8LN19_DINSH Length = 148 Score = 120 bits (302), Expect = 1e-26, Method: Composition-based stats. Identities = 47/132 (35%), Positives = 66/132 (50%), Gaps = 2/132 (1%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 RP I+IN D I+ L E +AD L E+ RA++ +MP +V+ + Sbjct: 17 RRPRIVINADDLSHIEALAEGAMDRNPALADRLLEEIARARIVPAAKMPLNVIGIGKSAT 76 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEV 121 FR+ + G+ R TLVYP S ++SVM P+G ALLGL G HW G L V Sbjct: 77 FRDETTGQERTVTLVYPEDADISRARVSVMTPIGVALLGLAEGAVFHWNTRGEERRMLTV 136 Query: 122 LELEYQ--PEAA 131 + + PE+A Sbjct: 137 IRVSDPAAPESA 148 >UniRef50_C6WYK0 GreA/GreB family elongation factor n=2 Tax=Methylophilaceae RepID=C6WYK0_METML Length = 125 Score = 120 bits (301), Expect = 1e-26, Method: Composition-based stats. Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 9/125 (7%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 M +I++D D R+ +L + L EL RA + +++P DVV +NSRV Sbjct: 2 MEIDKLILSDQDYARLSMLAND---------ELLGDELSRAIVVPADQVPADVVRINSRV 52 Query: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE 120 + + S G R LV+P ++SV++PVG+ALLGL+ G I W P G + L+ Sbjct: 53 IYLDESSGLSREVELVFPEGADLKFGKISVLSPVGSALLGLKEGQVIDWPFPHGQSRRLK 112 Query: 121 VLELE 125 V+ + Sbjct: 113 VVSVA 117 >UniRef50_A9EFF1 GreA/GreB family elongation factor n=1 Tax=Oceanibulbus indolifex HEL-45 RepID=A9EFF1_9RHOB Length = 146 Score = 119 bits (300), Expect = 2e-26, Method: Composition-based stats. Identities = 44/125 (35%), Positives = 71/125 (56%), Gaps = 1/125 (0%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 P +I+N D ++ L E + +AD E+ RAQ+ ++MP DVV + S+V Sbjct: 14 RNPHLILNAADLVHLEELAEGMMHRHPTLADRFFEEIGRAQIVEDQQMPGDVVGIGSKVT 73 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATH-LE 120 +R+ + G+ + TLVYP + +Q+SV+ P+G ALLGLR G S +W+ H L Sbjct: 74 YRDETTGQNKSVTLVYPEDADITRSQVSVITPIGVALLGLREGASFYWDTRRENQRHMLT 133 Query: 121 VLELE 125 +L++E Sbjct: 134 ILKVE 138 >UniRef50_A7IJH2 GreA/GreB family elongation factor n=4 Tax=Rhizobiales RepID=A7IJH2_XANP2 Length = 143 Score = 119 bits (300), Expect = 2e-26, Method: Composition-based stats. Identities = 45/126 (35%), Positives = 67/126 (53%), Gaps = 3/126 (2%) Query: 4 PTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFR 63 P ++++ D ER+ L +A+ L AELDRA++ +P V M S+V + Sbjct: 16 PALVLSHPDHERLAGLATAALDRIPDVAEELLAELDRARLVPIGRVPATAVQMGSKVTYE 75 Query: 64 NLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLE 123 + G R TLVYP + ++SVM P+GAAL+GL G SI W G L+V+E Sbjct: 76 --AGGNARTVTLVYPEDADIAAARVSVMTPIGAALIGLSKGQSICWTARDGRRHELKVIE 133 Query: 124 LEYQPE 129 ++ PE Sbjct: 134 VQ-PPE 138 >UniRef50_B4RF21 Transcription elongation factor n=2 Tax=cellular organisms RepID=B4RF21_PHEZH Length = 214 Score = 119 bits (300), Expect = 2e-26, Method: Composition-based stats. Identities = 42/126 (33%), Positives = 61/126 (48%), Gaps = 4/126 (3%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 PT+ + + D +R+ L + P A+ L ELDRA + E V + S V+ Sbjct: 93 RTPTVRVAEADYDRLLNLAD----HDGPGAELLARELDRAIVVREGEKSRPFVRLGSTVE 148 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEV 121 +R+ +VR LV P +LSV++PVGAALLGL VGD+ W P G + V Sbjct: 149 YRDRLTEKVRTVELVPPDAADIDANRLSVLSPVGAALLGLSVGDTFSWTAPDGRPRVVTV 208 Query: 122 LELEYQ 127 + Sbjct: 209 EAVRRD 214 >UniRef50_A8HR94 Transcription elongation factor greA n=5 Tax=Proteobacteria RepID=GREA_AZOC5 Length = 157 Score = 119 bits (299), Expect = 3e-26, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 55/134 (41%), Gaps = 9/134 (6%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPI--------ADALNAELDRAQMCSPEEMPHD 52 + RP II +A L E Y L ++ RA++ ++ D Sbjct: 24 VERPRIISAISEARAHGDLSENAEYHAAKELQSLNEGRIAELEDKISRAEVIDVSKLSGD 83 Query: 53 VVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELP 112 +V + V + E RV +V ++ ++S+ +PV AL+G + G S+ P Sbjct: 84 IVKFGATVTLVDEDTEEERVWQIVGDSEADAKAGRISISSPVARALIGKKKGSSVEVVTP 143 Query: 113 GGVATHLEVLELEY 126 G E++E+ + Sbjct: 144 KGA-RSFEIVEVRW 156 >UniRef50_Q0A765 Transcription elongation factor greA n=23 Tax=Proteobacteria RepID=GREA_ALHEH Length = 158 Score = 119 bits (298), Expect = 4e-26, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 50/135 (37%), Gaps = 10/135 (7%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPI--------ADALNAELDRAQMCSPEEMPH- 51 + RP II +A L E Y + +L AQ+ P + Sbjct: 24 VERPRIIQAIAEAREHGDLKENAEYHAAREQQSFVEGRIQEIEGKLSNAQVIDPAAVNAQ 83 Query: 52 DVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWEL 111 V + V + G+ +V + +SV +P+ AL+G GD + + Sbjct: 84 GKVIFGATVDLVDEDSGKEVTYQIVGEDEADIKQGLVSVNSPIARALIGKEEGDLVTVQA 143 Query: 112 PGGVATHLEVLELEY 126 PGG E++E+ Y Sbjct: 144 PGGE-REYEIVEVRY 157 >UniRef50_B0T7C4 GreA/GreB family elongation factor n=1 Tax=Caulobacter sp. K31 RepID=B0T7C4_CAUSK Length = 139 Score = 118 bits (296), Expect = 7e-26, Method: Composition-based stats. Identities = 43/130 (33%), Positives = 70/130 (53%), Gaps = 1/130 (0%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 ++RP II+ + +A+R+ L + A AD L E++RA++ + +MP VV M S V Sbjct: 8 VARPDIILAETEADRLSALATRLRDAAPQAADLLLEEIERAEIRADLDMPRTVVRMESVV 67 Query: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE 120 +F + + G R LVYP + ++SV++ VGA L+GL +I W G L Sbjct: 68 QFVDEAHGNPRTVLLVYPRDADIAAGKVSVLSFVGAGLIGLSPHQAIQWPDRNGRQRTLR 127 Query: 121 VLELEYQPEA 130 +L++ PE Sbjct: 128 ILKVR-PPER 136 >UniRef50_Q98F06 Nucleoside diphosphate kinase regulator n=2 Tax=Mesorhizobium RepID=Q98F06_RHILO Length = 140 Score = 117 bits (295), Expect = 7e-26, Method: Composition-based stats. Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 3/125 (2%) Query: 2 SRP--TIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSR 59 RP I+I+D D +R+ L A+ L E+DRA + MP DVV M S Sbjct: 7 PRPSSRILISDTDHDRLTGLARALLDRAPETAEELLFEMDRAVVTDAAAMPADVVRMGSA 66 Query: 60 VKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHL 119 V R G + LVYP + + ++SV+ P+G AL+G +G ++ W GG + Sbjct: 67 VTVR-GEGGATQRIMLVYPGEADIAENRISVLTPMGTALIGASIGQAVCWSSRGGRELSV 125 Query: 120 EVLEL 124 V + Sbjct: 126 TVEAV 130 >UniRef50_A7HFE1 GreA/GreB family elongation factor n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HFE1_ANADF Length = 164 Score = 117 bits (295), Expect = 9e-26, Method: Composition-based stats. Identities = 45/140 (32%), Positives = 71/140 (50%), Gaps = 8/140 (5%) Query: 5 TIIINDLDAERIDILLEQPA--------YAGLPIADALNAELDRAQMCSPEEMPHDVVTM 56 +++ + DA R+ L + + G + L L A + P+ +P +VVTM Sbjct: 25 RLLLTEQDAARLRATLARASLESMASADARGENAVELLATALRSAIVVPPDRIPAEVVTM 84 Query: 57 NSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVA 116 SR+ +++ G R LVYP + +SV++PVG ALLGL G + W LP G Sbjct: 85 RSRLVLEDVASGARREVVLVYPEEERTHEGHVSVLSPVGVALLGLSEGALVGWPLPSGRT 144 Query: 117 THLEVLELEYQPEAAGDYLL 136 L+V ++YQPEA ++ L Sbjct: 145 AVLQVESVQYQPEAVEEFHL 164 >UniRef50_B3E3H5 Transcription elongation factor greA n=19 Tax=Proteobacteria RepID=GREA_GEOLS Length = 158 Score = 117 bits (294), Expect = 1e-25, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 55/134 (41%), Gaps = 9/134 (6%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPI--------ADALNAELDRAQMCSPEEMPHDV 53 RP +I + +A L E Y L +L RA + + D Sbjct: 26 ERPKVIQDIAEARSHGDLSENAEYDAAKNRQGFIEGRIQELQGKLARAHVVDLTGLKPDK 85 Query: 54 VTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPG 113 V + V + + E +V + ++S +PVG AL+G ++ DS+ ++P Sbjct: 86 VVFGATVTLYDTASEEEITYKIVGEDEADIKLGKISCTSPVGKALIGHKLDDSVKVKVPA 145 Query: 114 GVATHLEVLELEYQ 127 G E++E++Y+ Sbjct: 146 GT-KEYEIIEIKYE 158 >UniRef50_Q057J4 Transcription elongation factor greA n=20 Tax=Proteobacteria RepID=GREA_BUCCC Length = 159 Score = 117 bits (293), Expect = 1e-25, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 10/135 (7%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIAD--------ALNAELDRAQMCSPEEMP-H 51 ++RP I+ +A ++ L E Y + +L RAQ+ ++P Sbjct: 25 ITRPCIVKAIANARQLGDLKENAEYHSAREEQSFCENRICEIENKLLRAQIIDITKIPFK 84 Query: 52 DVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWEL 111 +V S V +S + V T+V + +S+ +P+ AL+G + D I Sbjct: 85 GIVIFGSTVTVLQISTSNIFVYTIVGDDEANYKEFSISIHSPMSRALIGKKKNDIIKVNT 144 Query: 112 PGGVATHLEVLELEY 126 P G ++ + ++EY Sbjct: 145 PTGYIKYI-IKKIEY 158 >UniRef50_Q1LSK1 Transcription elongation factor greA n=16 Tax=Proteobacteria RepID=GREA_BAUCH Length = 158 Score = 117 bits (293), Expect = 1e-25, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 56/135 (41%), Gaps = 10/135 (7%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPI--------ADALNAELDRAQMCSPEEM-PH 51 + RP II N +A L E Y + ++L AQ+ ++ P Sbjct: 24 VRRPEIIRNIAEAREYGDLKENAEYHAAREQQGFCEGRIQEIESKLSHAQIIDVTKLFPS 83 Query: 52 DVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWEL 111 V V +NL+ E + +V + + +S+ +P+ L+G + GD + + Sbjct: 84 GKVVFGVTVSVQNLNINEEQTYRIVGDDEANFKHNLISISSPIARGLIGKKKGDIVLIKT 143 Query: 112 PGGVATHLEVLELEY 126 P G ++L++EY Sbjct: 144 PRGE-VKYQILKIEY 157 >UniRef50_B2S6W5 Transcription elongation factor greA n=39 Tax=Bacteria RepID=GREA_BRUA1 Length = 157 Score = 116 bits (292), Expect = 2e-25, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 53/133 (39%), Gaps = 9/133 (6%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIAD--------ALNAELDRAQMCSPEEMPHDV 53 RP II +A L E Y A L + RA++ ++ D Sbjct: 25 ERPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEGRINELEDLVARAEVIDVSKLTGDR 84 Query: 54 VTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPG 113 + + V + E ++ +V + ++S+ +P+ AL+G GD+I PG Sbjct: 85 IKFGATVTMIDEDTEEEKIYQIVGDQEADVKEGRISISSPIARALIGKGEGDTIEVNAPG 144 Query: 114 GVATHLEVLELEY 126 G E++ L++ Sbjct: 145 GS-RSYEIIALKF 156 >UniRef50_A1U1V6 GreA/GreB family elongation factor n=2 Tax=Marinobacter RepID=A1U1V6_MARAV Length = 128 Score = 116 bits (291), Expect = 2e-25, Method: Composition-based stats. Identities = 53/125 (42%), Positives = 75/125 (60%), Gaps = 1/125 (0%) Query: 4 PTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFR 63 P I +++ D R+ LLE+ A +AD L EL RA M +MP VVTMNSRV+F Sbjct: 5 PHITVSEEDYNRLSTLLERVAGQSD-VADGLEDELSRADMKPLADMPEGVVTMNSRVRFL 63 Query: 64 NLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLE 123 N GE LVYP ++ D++ ++S++AP GAA+LGL +G SI W + G HL+V+ Sbjct: 64 NEDTGEEHEVALVYPHEVGDADHKVSILAPAGAAMLGLSIGSSIEWPMKGRKPIHLKVIG 123 Query: 124 LEYQP 128 + P Sbjct: 124 VTRNP 128 >UniRef50_B7L307 GreA/GreB family elongation factor n=1 Tax=Methylobacterium chloromethanicum CM4 RepID=B7L307_METC4 Length = 147 Score = 116 bits (291), Expect = 2e-25, Method: Composition-based stats. Identities = 47/131 (35%), Positives = 67/131 (51%), Gaps = 2/131 (1%) Query: 3 RPTIIINDLDAERIDILLEQPAYAGLP--IADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 RP +II D + + + + L ELDRA + P +P VVTM++RV Sbjct: 10 RPPLIIPMSDFRFLREIAAGTGVSQARGSVVAWLAEELDRATVVPPGAVPPRVVTMHARV 69 Query: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE 120 ++R+ +VR TL YP + + +SV+ PVGAAL+GL G SI W P G L Sbjct: 70 EYRDDVTDQVRCVTLTYPGEEDAYASGISVLTPVGAALVGLSEGHSIRWRTPSGGLRGLT 129 Query: 121 VLELEYQPEAA 131 VL + + P A Sbjct: 130 VLRVRFAPHHA 140 >UniRef50_Q4HT85 Transcription elongation factor n=1 Tax=Campylobacter upsaliensis RM3195 RepID=Q4HT85_CAMUP Length = 161 Score = 116 bits (290), Expect = 3e-25, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 11/135 (8%) Query: 3 RPTIIINDLDAERI-DILLEQPAYAGLPIADALNA--------ELDRAQMCSPEEMPHDV 53 RP +++ ++D R L E Y AL L RAQ+ P H+ Sbjct: 26 RPAVVV-EIDVARSHGDLKENAEYHAAREKQALIESRIAELGGILSRAQVIDPASYEHES 84 Query: 54 VTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPG 113 V S V +L + TLV + +S+ +P+ A+LG + GD LP Sbjct: 85 VKFGSSVLIMDLESEKESKYTLVGTCESDLEKGYISIASPLARAMLGKKEGDEFKVRLPK 144 Query: 114 GVATHLEVLELEYQP 128 G + E+L + Y+P Sbjct: 145 GES-EFEILSVTYEP 158 >UniRef50_Q7UVA0 Transcription elongation factor greA n=3 Tax=Planctomycetaceae RepID=GREA_RHOBA Length = 159 Score = 116 bits (290), Expect = 3e-25, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 54/131 (41%), Gaps = 9/131 (6%) Query: 4 PTIIINDLDAERIDILLEQPAYAGLPI--------ADALNAELDRAQMCSPEEMPHDVVT 55 P I+ +A L E Y + L ++ RA + +P D V Sbjct: 28 PMIVQKIAEAREEGDLKENAEYHAQRENQGMLMAKINELRDKIARASIIDVSSLPKDEVV 87 Query: 56 MNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGV 115 V +++ G+ TLV + ++ V +P G L+G +VG++ ++P G Sbjct: 88 FGCTVTVEDVAYGDEEQFTLVGAGDEDYDSGKILVTSPFGQGLVGKKVGETAEVDVPAG- 146 Query: 116 ATHLEVLELEY 126 ++L++E+ Sbjct: 147 KLKFKILKIEF 157 >UniRef50_D2R891 Transcription elongation factor GreA n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R891_9PLAN Length = 164 Score = 115 bits (289), Expect = 4e-25, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 9/132 (6%) Query: 4 PTIIINDLDAERIDILLEQPAYAGLPIADAL--------NAELDRAQMCSPEEMPHDVVT 55 P I DA L E Y A L +L +A + P MP D V+ Sbjct: 28 PDITQKIADARAEGDLKENAEYHAQREAQGLLQAKINLIRNKLSKASIIDPSTMPRDQVS 87 Query: 56 MNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGV 115 + V +++ E TLV + + ++ + +P+G AL+G ++GD + P G Sbjct: 88 FGTTVLVKDIDMDEEEEFTLVGAGEEDYNAGRILITSPLGQALVGKKIGDVVDVPAPKGS 147 Query: 116 ATHLEVLELEYQ 127 LE+L L++ Sbjct: 148 YQ-LEILTLKFD 158 >UniRef50_Q1H282 GreA/GreB family elongation factor n=2 Tax=Proteobacteria RepID=Q1H282_METFK Length = 165 Score = 115 bits (288), Expect = 5e-25, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 7/125 (5%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 R + + D L L A L+ A + P P D V + V+ Sbjct: 48 ERQPLTMRKDDPAVQQRLA-----MIDRDLRYLQARLESAIVVDPATQPTDTVLFGATVE 102 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEV 121 + +G +V + + ++S ++P+ AL+G ++GDS+ W P G LE+ Sbjct: 103 VED-ENGNSHTFMIVGEDEADIATNRVSWVSPLAKALIGQKIGDSVTWHRPAG-NLELEI 160 Query: 122 LELEY 126 + + Y Sbjct: 161 IAIHY 165 >UniRef50_C6XWY5 Transcription elongation factor GreA/GreB domain protein n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XWY5_PEDHD Length = 125 Score = 114 bits (285), Expect = 1e-24, Method: Composition-based stats. Identities = 40/124 (32%), Positives = 65/124 (52%), Gaps = 2/124 (1%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 M ++ ++ D + + LE+ + + L AEL A + + EE+P DVV + S Sbjct: 1 METKSLSLSKSDFKLLKEHLEKSNMSAYNK-EKLQAELKAATIYTEEELPSDVVCLKSEA 59 Query: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE 120 + N+ G+ LV P + ++SV AP+G AL G R GDSI+WE+P G + Sbjct: 60 RIANVKTGKEFTFKLVMPEEANIKAQKVSVFAPIGIALFGYRTGDSINWEMPDG-IQEFK 118 Query: 121 VLEL 124 +LE+ Sbjct: 119 ILEV 122 >UniRef50_C0QKN0 Transcription elongation factor n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QKN0_DESAH Length = 175 Score = 114 bits (285), Expect = 1e-24, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 9/132 (6%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIAD--------ALNAELDRAQMCSPEEMPHD 52 + RP I A L E + L ++ A++ P + D Sbjct: 44 IERPQNIKAIEIARAHGDLSENAEFDAAKDRQSFIEGRIGELGYKIASAKIIDPATVSKD 103 Query: 53 VVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELP 112 V SRV NL GE +V + ++SV +P+G ALLG + GD I + P Sbjct: 104 CVRFASRVVIENLDSGEEVEYMIVGQEESDIHKGKISVSSPLGMALLGKQPGDEIVIQAP 163 Query: 113 GGVATHLEVLEL 124 GG + E++++ Sbjct: 164 GG-KRNYEIVDI 174 >UniRef50_B0T793 GreA/GreB family elongation factor n=1 Tax=Caulobacter sp. K31 RepID=B0T793_CAUSK Length = 141 Score = 113 bits (284), Expect = 2e-24, Method: Composition-based stats. Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 1/123 (0%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 ++PTI + + D E + L + PA L E+ RA + P + P V + SR+ Sbjct: 18 AQPTIYVTEQDFEILSNLADAPAGRAF-GGRVLAHEMARALIVEPGQAPLPFVRIGSRID 76 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEV 121 +R+LS+G+ R L P + + ++SV++PVGAAL+G+ G + HW G ++V Sbjct: 77 YRDLSNGQTRSVRLSLPRDASIDDNRISVLSPVGAALVGMTAGQAFHWTDAEGRPRGVQV 136 Query: 122 LEL 124 + + Sbjct: 137 IAV 139 >UniRef50_Q7VM42 Transcription elongation factor greB n=27 Tax=Proteobacteria RepID=GREB_HAEDU Length = 162 Score = 113 bits (284), Expect = 2e-24, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 50/134 (37%), Gaps = 10/134 (7%) Query: 2 SRPTIIINDLDAERIDILLEQPAY--------AGLPIADALNAELDRAQMCSPEEMPHDV 53 RP + + +A + E Y L+ L+ Q+ Sbjct: 26 ERPKVTQSVSEAAALGDRSENAEYIYGKRRLREIDRRIRFLSKRLEALQIIDYHPQQAGK 85 Query: 54 VTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPG 113 V + ++ N ++GE+ +V + + +S+ +PV AL+G V D I + P Sbjct: 86 VFFGAWIELEN-NEGEINQYRIVGCDEFDPTKNWISIDSPVARALIGKCVDDEIEVQTPT 144 Query: 114 GVATHLEVLELEYQ 127 G A + ++ Y Sbjct: 145 GKAVFY-INKIWYD 157 >UniRef50_A7HAZ2 GreA/GreB family elongation factor n=5 Tax=Myxococcaceae RepID=A7HAZ2_ANADF Length = 138 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 51/123 (41%), Positives = 70/123 (56%), Gaps = 3/123 (2%) Query: 2 SRPTIIINDLDAERIDILLE-QPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 +R I + D +R+ L++ A A+ L+AELDRA E P D+VTMN+RV Sbjct: 3 ARKPIHVTHADLDRLRALVDQHLAGRDARAAEQLDAELDRA--VPIEVAPPDLVTMNARV 60 Query: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE 120 F +L+ G R LVYP + ++SV+AP+GAALLGL VG+ I W LP G L Sbjct: 61 AFVDLASGVRRELVLVYPRDADVAAGRVSVLAPIGAALLGLSVGEEIDWPLPDGRVARLR 120 Query: 121 VLE 123 +L Sbjct: 121 ILS 123 >UniRef50_A6LPL4 Transcription elongation factor greA n=30 Tax=Clostridia RepID=GREA_CLOB8 Length = 160 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 9/134 (6%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIAD--------ALNAELDRAQMCSPEEMPHD 52 + R I A L E Y L L A + E+P D Sbjct: 27 VKRKEITEKIKIALGYGDLSENSEYDEAKNDQAFTEGRIIQLENMLKNAVVVDESEIPSD 86 Query: 53 VVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELP 112 +V++ S+VK ++ E ++V A+ N ++S +PVG AL+G +VGD + +P Sbjct: 87 IVSVGSKVKVKDYEFDEEVEYSIVGSAEADPMNFKISNESPVGNALVGKKVGDVVEVTVP 146 Query: 113 GGVATHLEVLELEY 126 GV E+L + Sbjct: 147 DGVN-KFEILGISR 159 >UniRef50_A4BB58 Nucleoside diphosphate kinase regulator n=1 Tax=Reinekea blandensis MED297 RepID=A4BB58_9GAMM Length = 142 Score = 112 bits (282), Expect = 2e-24, Method: Composition-based stats. Identities = 48/128 (37%), Positives = 74/128 (57%), Gaps = 3/128 (2%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 +P + I++ D +R+ L+ D L +ELDRA +C P E+P D V + S V+ Sbjct: 4 PKPDVFISEHDWQRLQRLVAHYPDHEA--IDWLESELDRATVCLPNELPADAVQLGSVVR 61 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEV 121 F+ S G+V +R LV P + + +SV++PVG ALLGLRVGD I W G +T + + Sbjct: 62 FQLSSSGQVYLRELVLP-EQRQHDEHISVLSPVGMALLGLRVGDEIAWPSSPGQSTTVRI 120 Query: 122 LELEYQPE 129 L+++ E Sbjct: 121 LDVKQDRE 128 >UniRef50_Q2GA51 GreA/GreB family elongation factor n=1 Tax=Novosphingobium aromaticivorans DSM 12444 RepID=Q2GA51_NOVAD Length = 159 Score = 112 bits (281), Expect = 3e-24, Method: Composition-based stats. Identities = 44/122 (36%), Positives = 69/122 (56%) Query: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKF 62 RP II+ D +A+ + L + I+ L E+ RAQ+ +++P D V M S V+F Sbjct: 30 RPQIILIDSEADALADLALAASDRLPEISRMLMEEIGRAQIVPAQDLPPDAVAMRSVVRF 89 Query: 63 RNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVL 122 R+ + G VR TLVYPA+ + ++S++ PVGA L+GLR G SI W G + + Sbjct: 90 RDEATGAVRTVTLVYPAEADIAQDRVSILTPVGAGLIGLRAGQSIDWPNVRGKQRAITIE 149 Query: 123 EL 124 ++ Sbjct: 150 QV 151 >UniRef50_Q725M4 Transcription elongation factor greA n=4 Tax=Desulfovibrionaceae RepID=GREA_DESVH Length = 163 Score = 112 bits (281), Expect = 4e-24, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 54/133 (40%), Gaps = 9/133 (6%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIAD-ALNAELDRAQ-------MCSPEEMPHDV 53 RP +I +A L E Y L A + + + + + D Sbjct: 24 ERPGVIQAIKEAREEGDLSENAGYDAARERQGMLEARIKYIESRMAQFNVIDLDTISGDK 83 Query: 54 VTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPG 113 V + VK +L GE + TL+ P + + +SV +PV A+LG GD I + P Sbjct: 84 VMFGATVKIEDLESGEEKEYTLLGPDEADYAKGSISVQSPVARAMLGKEEGDEIVVDAPR 143 Query: 114 GVATHLEVLELEY 126 G H E++ + + Sbjct: 144 GKI-HYEIVSIRF 155 >UniRef50_A8F083 Transcription elongation factor greA n=13 Tax=Rickettsia RepID=GREA_RICCK Length = 162 Score = 111 bits (279), Expect = 5e-24, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 51/135 (37%), Gaps = 9/135 (6%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPI--------ADALNAELDRAQMCSPEEMPHD 52 + R I + +A L E Y L RA++ ++ D Sbjct: 25 VERKKISEDIAEAREHGDLSENAEYEAAREKQAFIEGRIKELEDMAARAEIIDISKLSGD 84 Query: 53 VVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELP 112 + + V + E +V + + ++S+ +P+ AL+G VGD + P Sbjct: 85 NIKFGATVTLIDDDTEEKVTYIVVGEYEADITRKRVSIASPIAKALIGKSVGDFVEVTTP 144 Query: 113 GGVATHLEVLELEYQ 127 G EV+E+EY+ Sbjct: 145 KGS-KSYEVVEVEYK 158 >UniRef50_A3ESJ0 Transcription elongation factor n=4 Tax=Bacteria RepID=A3ESJ0_9BACT Length = 160 Score = 111 bits (279), Expect = 6e-24, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 9/133 (6%) Query: 3 RPTIIINDLDAERIDILLEQPAYAGLPI--------ADALNAELDRAQMCSPEEMPHDVV 54 RP I + +A L E Y L A++ A + S H + Sbjct: 26 RPKNIQDIAEARAHGDLSENAEYHAAKERQGFINSRIKELEAKIASAIVVSSAHQDHSRI 85 Query: 55 TMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGG 114 T + V+ L E + TLV + ++SV +PVG AL+G G+++ +P G Sbjct: 86 TFGATVRLVPLDSKEEKRYTLVGQEEADLKAGRISVHSPVGKALIGHSEGETVTIRVPAG 145 Query: 115 VATHLEVLELEYQ 127 + E+ Y+ Sbjct: 146 EVQ-YTIAEIFYE 157 >UniRef50_Q04EK0 Transcription elongation factor greA n=4 Tax=Bacilli RepID=GREA_OENOB Length = 162 Score = 111 bits (278), Expect = 7e-24, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 8/132 (6%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIAD--------ALNAELDRAQMCSPEEMPHDV 53 RP I +A L E Y L + AQ+ +V Sbjct: 28 KRPAITSRIQEARSFGDLSENSEYQSAKDEQAFVEGRVKQLQQMIQFAQVIDASSASKNV 87 Query: 54 VTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPG 113 VT+ ++ F+ + DG+ T+V A+ + ++S +P+G ALL + GD + LP Sbjct: 88 VTLGKKISFKEVPDGDEETYTIVGSAESDPLSGKISNDSPMGKALLDHKTGDKVEIPLPE 147 Query: 114 GVATHLEVLELE 125 + +E+L + Sbjct: 148 NHSVTVEILHVS 159 >UniRef50_C0A6F4 GreA/GreB family elongation factor n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A6F4_9BACT Length = 148 Score = 111 bits (278), Expect = 8e-24, Method: Composition-based stats. Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 8/132 (6%) Query: 2 SRPTIIINDLDA----ERIDILLEQPAYAGLPIADALNAELDRAQMC-SPEEMPHDVVTM 56 + I I+ D R++++ E L AE DRA + MP VVT+ Sbjct: 3 EQQPIYISRADLLQIRARLNLIAEGR--HDRENLARLRAEFDRALIIEDDTAMPDGVVTL 60 Query: 57 NSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVA 116 + V+ ++L E+ TL P ++S++AP+G ALLG +V + + WE+PGG Sbjct: 61 HCEVRLQDLDTNEIETYTLTLPEHADPEAHRISILAPIGTALLGYQVDNVVTWEMPGGA- 119 Query: 117 THLEVLELEYQP 128 L +LE QP Sbjct: 120 RRLRILEARRQP 131 >UniRef50_Q930S2 Putative uncharacterized protein n=1 Tax=Sinorhizobium meliloti RepID=Q930S2_RHIME Length = 140 Score = 111 bits (278), Expect = 8e-24, Method: Composition-based stats. Identities = 40/121 (33%), Positives = 58/121 (47%), Gaps = 1/121 (0%) Query: 7 IINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLS 66 I D + L Q IA L +L+R + +++P DVV + S V + Sbjct: 14 FIGATDYRLLSRLAYQALSRDFDIAAELIEKLERPCVLPDDQVPPDVVKIGSIVTCE-VE 72 Query: 67 DGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 DG R +LVYP + ++SV+ PVG ALLGLR G ++ W G HL V+ +E Sbjct: 73 DGPCRTFSLVYPDDVDAEKGRISVLTPVGVALLGLRPGQAVEWFSRDGQRNHLIVVRVED 132 Query: 127 Q 127 Sbjct: 133 D 133 >UniRef50_B1ZU20 GreA/GreB family elongation factor n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZU20_OPITP Length = 143 Score = 111 bits (278), Expect = 8e-24, Method: Composition-based stats. Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 3/131 (2%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 M+ + + D ++ +L + G P L +EL R + +P + + S V Sbjct: 1 MNTSPLYFSIEDYTKLSLLATATSRPGTPS--QLRSELSRGVVVDATALPPTAIRLGSTV 58 Query: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE 120 + +L GE+ TLV P + +LSV+AP+G A++G G + W PGG L Sbjct: 59 EIEDLESGEIETYTLVLPEQANVDARKLSVLAPIGTAVIGCLQGAEVAWSTPGGT-RRLR 117 Query: 121 VLELEYQPEAA 131 + + E A Sbjct: 118 IGRVSPPAEPA 128 >UniRef50_Q0BZP7 Regulatory protein n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0BZP7_HYPNA Length = 128 Score = 111 bits (277), Expect = 1e-23, Method: Composition-based stats. Identities = 45/126 (35%), Positives = 69/126 (54%), Gaps = 2/126 (1%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 ++RP I + D + ER+ L P AD L EL RA++ + E++P DVV M+ RV Sbjct: 4 ITRPPIYVTDAELERLSDLA-HAVQGREPAADMLIEELSRARVTAVEDVPVDVVRMHDRV 62 Query: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE 120 F TLVYP + ++ ++S++ VGA L+GL+VGD++ W G +E Sbjct: 63 NFV-YDGARYEDFTLVYPYEANIADKRISILTQVGAMLIGLQVGDAMQWAGRDGRGHSME 121 Query: 121 VLELEY 126 VLE+ Sbjct: 122 VLEVSR 127 >UniRef50_Q8ZJH2 Transcription elongation factor greB n=165 Tax=Proteobacteria RepID=GREB_YERPE Length = 171 Score = 110 bits (275), Expect = 2e-23, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 10/135 (7%) Query: 2 SRPTIIINDLDAERIDILLEQPAY--------AGLPIADALNAELDRAQMCSPEEMPHDV 53 RP + +A + E Y L L+ ++ P+ Sbjct: 26 ERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREIDRRVRFLAKRLEVLKIVDPDPRQEGK 85 Query: 54 VTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPG 113 V + V+ N + E R+ LV P + + +S+ +PV AL+G +V D + + P Sbjct: 86 VFFGAWVRVENEQE-EQRIFRLVGPDEFDPAKKWISIDSPVARALIGKQVDDEVTVQTPN 144 Query: 114 GVATHLEVLELEYQP 128 G AT+ +LE+ Y+P Sbjct: 145 GEATYW-ILEIRYRP 158 >UniRef50_D0J9T5 Transcription elongation factor n=55 Tax=Bacteria RepID=D0J9T5_BLASP Length = 162 Score = 110 bits (275), Expect = 2e-23, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 8/134 (5%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADA--------LNAELDRAQMCSPEEMPHD 52 + RP I + +A L E Y + A L +L A++ ++ Sbjct: 27 IERPKISMQIAEARDKGDLSENAEYDAIKEAQEFLEMNIAKLKKKLSNARIIDGSQINRT 86 Query: 53 VVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELP 112 V++ S V+ +NL+ G ++ TLV + + ++S+ P+ LLG +VG H +LP Sbjct: 87 RVSILSTVRVKNLTYGGEQIYTLVPEGEADLKSGKISINTPISTGLLGKQVGQIAHIKLP 146 Query: 113 GGVATHLEVLELEY 126 + E+LE+ + Sbjct: 147 NKMILDYEILEIAF 160 >UniRef50_B4UCU9 Transcription elongation factor greA n=588 Tax=Bacteria RepID=GREA_ANASK Length = 166 Score = 109 bits (274), Expect = 2e-23, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 48/134 (35%), Gaps = 9/134 (6%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPI--------ADALNAELDRAQMCSPEEMPHD 52 + RP I+ +A L E Y + + A++ + D Sbjct: 24 VERPKIVKEIAEARAHGDLSENAEYHAAKEKQSHIEGRIAQVEHWIASAEVIDVTKHAGD 83 Query: 53 VVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELP 112 V + V + G+ +V + ++SV +P+ AL+G GD++ P Sbjct: 84 RVVFGATVSLEDAESGDQVTYRIVGELEADLKQGKISVTSPIARALIGRSEGDTVVVRSP 143 Query: 113 GGVATHLEVLELEY 126 GG E+ + + Sbjct: 144 GGE-KEYEIQSVAF 156 >UniRef50_Q97EB6 Transcription elongation factor greA n=6 Tax=Clostridiales RepID=GREA_CLOAB Length = 158 Score = 109 bits (273), Expect = 3e-23, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 1/108 (0%) Query: 18 ILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVY 77 + + L A + E+ +DVV++ S+V ++ E ++V Sbjct: 52 DEAKNDQAFVEGRIAQIENMLKNANVIDESELKNDVVSVGSKVMVKDYQFDEEIEFSIVG 111 Query: 78 PAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 A+ ++S +PVG+AL+G +VGD I +P GV ++L ++ Sbjct: 112 SAEADPIENKISNESPVGSALIGKKVGDEIEVNVPDGVD-KYKILAIK 158 >UniRef50_Q15Z69 GreA/GreB family elongation factor n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15Z69_PSEA6 Length = 128 Score = 109 bits (273), Expect = 3e-23, Method: Composition-based stats. Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 2/124 (1%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 +P III+ D ++ LE+ A+ ELDRA + + +++P +VV + S+V Sbjct: 3 KQPDIIISTADLAELEYQLERSKLPDDA-IRAIENELDRATIVACKDLPENVVAIGSQVT 61 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEV 121 F+ L +V + L P +SV AP+G+AL+GL G I W+ G +E+ Sbjct: 62 FKILDSQKVFTKALCLPHDSVKFEDSISVFAPIGSALIGLSTGQCIKWQTQRG-QQSVEI 120 Query: 122 LELE 125 +++E Sbjct: 121 IKVE 124 >UniRef50_A5V3E1 Transcription elongation factor greA n=13 Tax=Proteobacteria RepID=GREA_SPHWW Length = 158 Score = 109 bits (273), Expect = 3e-23, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 10/133 (7%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPI--------ADALNAELDRAQMCSPEEMPHDV 53 RP II +A L E Y + L RAQ+ P + D Sbjct: 27 ERPLIIDAIEEARAHGDLSENAEYHAAKERQGQIEASIADIEDRLSRAQVIDPSMLSGDK 86 Query: 54 VTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPG 113 + + V + D + +V + ++S +P+G AL+G +V D + +P Sbjct: 87 IVFGATVTLLD-DDEKPVRYQIVGQTEADAKTGKISYNSPLGRALIGKKVDDEVEVTVPS 145 Query: 114 GVATHLEVLELEY 126 G +L V ++E+ Sbjct: 146 GDRFYL-VSKIEF 157 >UniRef50_A4CMB9 Nucleoside diphosphate kinase regulator n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CMB9_9FLAO Length = 139 Score = 109 bits (272), Expect = 4e-23, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 6/132 (4%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPI----ADALNAELDRAQMCSPEEMPHDVVTM 56 M ++I + + + A+ L ELD A++ EM +DVV Sbjct: 1 MKYKQLLIEKKEYVLLKRYVNLSAHYHDATLWQSIQKLLTELDSAKIVDEAEMQNDVVRF 60 Query: 57 NSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVA 116 +S + + +G R LV P + S ++S++ P+G AL G GD++ WE P G Sbjct: 61 HSIITVTS-ENGWSRRVQLVLPPERDVSKDKISILTPMGIALFGYAEGDTVSWEFPSG-P 118 Query: 117 THLEVLELEYQP 128 L + ++E +P Sbjct: 119 KRLRIEKVEQEP 130 >UniRef50_D0LKY5 Transcription elongation factor n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LKY5_HALO1 Length = 169 Score = 108 bits (271), Expect = 5e-23, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 52/120 (43%), Gaps = 7/120 (5%) Query: 9 NDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDG 68 D DA + + A+L +++ P ++ + V + V ++ G Sbjct: 47 ADYDAAKEEQ------GMIEARIREYEAKLALSEVIDPTKLSGERVKFGATVTVEDIDTG 100 Query: 69 EVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEYQP 128 + T+V + N ++SV APV AL+G +GD + P G E++++++ P Sbjct: 101 DEATYTIVGEHEADIKNKRISVTAPVARALIGKAIGDETQVQTPKGT-RAFEIVDVKWLP 159 >UniRef50_UPI00016C498C transcription elongation factor greA n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C498C Length = 161 Score = 108 bits (270), Expect = 6e-23, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 9/121 (7%) Query: 13 AERIDILLEQPAYAGLPI--------ADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRN 64 A + L E Y DAL+ L RA + +P D V S+V+ + Sbjct: 38 ARDLGDLSENAEYHAAREDQGILQARIDALSDRLSRAVIVDTSNLPKDTVAFGSKVRVLD 97 Query: 65 LSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 + E LV P + ++ +P+G L+G + GD++ ++P G ++LE+ Sbjct: 98 VDVDEEETFELVSPGQENPDKGRILTGSPIGQGLIGRKKGDTVEIQVPSGTI-KFKILEI 156 Query: 125 E 125 Sbjct: 157 S 157 >UniRef50_C9RKD0 Transcription elongation factor n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RKD0_FIBSS Length = 151 Score = 108 bits (270), Expect = 6e-23, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 11/132 (8%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIA---------DALNAELDRAQMCSPEEMPH 51 + RP ++ +DA L E Y L +L RAQ+ + Sbjct: 20 VERPRVLQELVDARAQGDLSENAEYHAAKERLASIDNIEMPKLQDQLARAQVI-AFDANS 78 Query: 52 DVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWEL 111 D + + + +NL V LV P + N ++S +P+GAAL+G + GD++ Sbjct: 79 DTIKFGATITAKNLKTKREIVYQLVSPEEADALNGKISFKSPIGAALMGKKRGDTVEVVT 138 Query: 112 PGGVATHLEVLE 123 P G E+++ Sbjct: 139 PKGKNQ-FEIID 149 >UniRef50_Q2GD99 Transcription elongation factor greA n=2 Tax=Neorickettsia RepID=GREA_NEOSM Length = 159 Score = 108 bits (270), Expect = 7e-23, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 52/132 (39%), Gaps = 9/132 (6%) Query: 3 RPTIIINDLDAERIDILLEQPAYAGLPI--------ADALNAELDRAQMCSPEEMPHDVV 54 +P+++ A + L E Y L L A++ + + V Sbjct: 26 KPSVVAAVAQARELGDLSENAEYHEARKEQSFVEGKIRELQLCLSEAEVIDVSQFTGERV 85 Query: 55 TMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGG 114 + V N+ V + +V + ++SV +P+G A++ VG+ + +LP G Sbjct: 86 KFGASVTLENMESKSVLIYQIVGNLESDIKEGKISVSSPIGKAVMNKEVGEIVEIDLPSG 145 Query: 115 VATHLEVLELEY 126 ++L +E+ Sbjct: 146 -KKTYKILGVEF 156 >UniRef50_Q9HZY5 Transcription elongation factor greB n=13 Tax=Gammaproteobacteria RepID=GREB_PSEAE Length = 168 Score = 107 bits (269), Expect = 8e-23, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 49/136 (36%), Gaps = 10/136 (7%) Query: 1 MSRPTIIINDLDAERIDILLEQPAY--------AGLPIADALNAELDRAQMCSPEEMPHD 52 + RP + +A + E Y L L+ ++ + Sbjct: 33 VRRPQVTQAVSEAAALGDRSENAEYIYGKKMLREIDSRVRFLRKRLENLKVVGERPADPN 92 Query: 53 VVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELP 112 V + V + GE +V P ++ N Q+S+ +P+ AL+G + + P Sbjct: 93 RVYFGAWVTLEDED-GEQARYRIVGPDELDLRNNQISIDSPLARALVGKELDAEVLVRTP 151 Query: 113 GGVATHLEVLELEYQP 128 G V+E+EY P Sbjct: 152 AGEKLWF-VVEIEYPP 166 >UniRef50_A6EIL5 Nucleoside diphosphate kinase regulator protein, putative n=1 Tax=Pedobacter sp. BAL39 RepID=A6EIL5_9SPHI Length = 129 Score = 107 bits (269), Expect = 8e-23, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 5 TIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRN 64 ++I D + + + + +L+AEL RA + S EE P D + +NS V+ ++ Sbjct: 8 QVVITADDYQLLKPYFTKTNPHAGEM--SLSAELSRAVILSNEEFPSDAIRLNSTVRIQD 65 Query: 65 LSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 S GE+ +V P ++SV+ P+ AAL+G R GD++ W++P G + + E+ Sbjct: 66 ESTGEIMELIIVLPQHANIKEKKISVLTPIAAALIGFRQGDAVQWKVPAG-LKNFRITEV 124 Query: 125 E 125 Sbjct: 125 A 125 >UniRef50_C4XLU8 Transcription elongation factor greA n=11 Tax=Desulfovibrionales RepID=GREA_DESMR Length = 164 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 10/139 (7%) Query: 4 PTIIINDLDAERIDILLEQPAYAGLPI--------ADALNAELDRAQMCSPEEMPHDVVT 55 P +I+ +A L E Y + + + + R + + + V Sbjct: 26 PGVILAIKEAREEGDLRENAGYEAARERQGMLEARINYIESRMSRFNVIDLATLGGEQVI 85 Query: 56 MNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGV 115 + V+ ++ G+V+ TL+ P + S +S+++PVG ALLG VGD I + P G Sbjct: 86 FGATVEIEDVDTGDVKKYTLLGPDEAEPSKGSISLLSPVGLALLGKFVGDEIVVDAPRGK 145 Query: 116 ATHLEVLELEYQ-PEAAGD 133 + E++ + + P AA D Sbjct: 146 I-NYEIVSIAFHGPIAAAD 163 >UniRef50_A9WK05 Transcription elongation factor greA n=6 Tax=Chloroflexi (class) RepID=GREA_CHLAA Length = 157 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 52/133 (39%), Gaps = 9/133 (6%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLP--------IADALNAELDRAQMCSPEEMPHD 52 + R I A+ + + E Y L L RA++ ++ + Sbjct: 26 VERKQIAERIAAAKELGDISESGEYEDAKKAQALLEGRIRELKHLLSRAEVIDEDQASNG 85 Query: 53 VVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELP 112 V + S V R DG T+V A+ ++S +P+GAALLG R + + P Sbjct: 86 EVRVGSSVTVRFEDDGTEETWTIVGSAEANPRQGRISNESPLGAALLGKRARNKVTVHTP 145 Query: 113 GGVATHLEVLELE 125 G L +L++ Sbjct: 146 SG-VMKLTILKVR 157 >UniRef50_D1B0C0 Transcription elongation factor n=4 Tax=Campylobacteraceae RepID=D1B0C0_SULD5 Length = 167 Score = 107 bits (267), Expect = 1e-22, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 48/134 (35%), Gaps = 10/134 (7%) Query: 2 SRPTIIINDLDAERI-DILLEQPAYAGLPI--------ADALNAELDRAQMCSPEEMPHD 52 + + +LD R L E Y L+ + R+Q+ P HD Sbjct: 25 RQRPETVIELDIARSHGDLKENAEYHAAKEKLAFIDSRIAELSDLVSRSQVIDPSTYEHD 84 Query: 53 VVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELP 112 V S + NL E ++V + +S +P+ L+G V + + +LP Sbjct: 85 KVRFGSTITLENLETNEEVTYSIVGSTESNPDLGLISYHSPLSKQLMGRCVDEEVMIKLP 144 Query: 113 GGVATHLEVLELEY 126 G +L + Y Sbjct: 145 VGT-QEYAILNITY 157 >UniRef50_Q5QX12 Transcription elongation factor family protein n=1 Tax=Idiomarina loihiensis RepID=Q5QX12_IDILO Length = 129 Score = 107 bits (267), Expect = 1e-22, Method: Composition-based stats. Identities = 44/124 (35%), Positives = 69/124 (55%), Gaps = 2/124 (1%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 +RP I+I+ +D I+ L++ D L EL RA++ P MP +V +N +V Sbjct: 7 TRPNIVISCVDMAVIEHHLDETRLPRE-FLDELEVELARAKIVEPNVMPANVACLNRQVT 65 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEV 121 F+ L G+V +TL P ++ + LSV AP+GAAL+GL VG SI W+ G +E+ Sbjct: 66 FKVLETGKVFTKTLTAPDQVDKYDDSLSVFAPLGAALIGLSVGQSIQWKTNRG-LQSVEI 124 Query: 122 LELE 125 + + Sbjct: 125 VHVA 128 >UniRef50_A5FRA2 Transcription elongation factor n=3 Tax=Dehalococcoides RepID=A5FRA2_DEHSB Length = 266 Score = 107 bits (267), Expect = 2e-22, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 9/119 (7%) Query: 17 DILLEQPAYAGLPIAD--------ALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDG 68 + E Y + EL A++ + V M + VK R+L +G Sbjct: 149 KDMRENAPYHAAKEQRGQIEGRIKEIEHELKHAEVSEYTDNNTSKVNMGNTVKLRDLKNG 208 Query: 69 EVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEYQ 127 E + TLV P ++ ++S +P+G AL GD+I E+P G ++ + ++ ++ Sbjct: 209 EQCIYTLVSPKEIEPLKGRISASSPIGKALFNRSKGDNIEIEVPSGTLQYV-IEDISFK 266 >UniRef50_Q88DU7 Transcription elongation factor greA n=83 Tax=Proteobacteria RepID=GREA_PSEPK Length = 160 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 47/134 (35%), Gaps = 10/134 (7%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPI--------ADALNAELDRAQMCSPEEMP-HD 52 RP + +A + L E Y + L + + +P Sbjct: 27 ERPRLSQAIGEARELGDLKENAEYHAAREEQGMVEARIRDIEGRLQNSVVIDVTTIPHTG 86 Query: 53 VVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELP 112 V + V N E +V + +LS AP+ A++G GD++ + P Sbjct: 87 KVIFGTTVVLANTETDEEVTYQIVGEDEADVKQGKLSSGAPIARAIIGKEEGDTVVVKTP 146 Query: 113 GGVATHLEVLELEY 126 G E++E+++ Sbjct: 147 SGT-VEYEIVEVKH 159 >UniRef50_B1MX52 Transcription elongation factor greA n=11 Tax=Firmicutes RepID=GREA_LEUCK Length = 160 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 53/131 (40%), Gaps = 8/131 (6%) Query: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADA--------LNAELDRAQMCSPEEMPHDVV 54 RP I A L E Y A L ++ A++ P DVV Sbjct: 29 RPEITNRIQIARSYGDLSENSEYQSAKDEQAFVEGRILTLKKMIENAEIIDPNATAADVV 88 Query: 55 TMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGG 114 ++ V F+ L D E +V + ++S + + ALL +VGD + LP G Sbjct: 89 SLGKTVTFKELPDEEPETYAIVGSTESDPLAGKISNESAMAVALLDKKVGDKVSVPLPSG 148 Query: 115 VATHLEVLELE 125 + +E+L++E Sbjct: 149 ESIDVEILKVE 159 >UniRef50_Q1H0G6 GreA/GreB family elongation factor n=3 Tax=Proteobacteria RepID=Q1H0G6_METFK Length = 165 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 2/112 (1%) Query: 22 QPAYAGLPIADALNAELDRAQMCSPEEMPH-DVVTMNSRVKFRNLSDGEVRVRTLVYPAK 80 + L +D A + P + + + + V+ ++ +V + Sbjct: 55 KRLRQIDSRLRFLMKRMDIAVVVDPAQQQDLEKIYFGAWVELYSIDKDSEHHYRIVGQDE 114 Query: 81 MTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEYQPEAAG 132 + +S ++P+ ALLG + GD I E P G E++++ Y P G Sbjct: 115 LDPGKGYISWISPLARALLGKQPGDVIRVETPAGEER-FEIVDVSYHPPGQG 165 >UniRef50_D1B632 Transcription elongation factor n=4 Tax=Synergistaceae RepID=D1B632_THEAS Length = 164 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 9/122 (7%) Query: 12 DAERIDILLEQPAYAGLPIADA--------LNAELDRAQMCSPEEMPHDVVTMNSRVKFR 63 +A L E Y L +L +A++ ++ V++ + V+ R Sbjct: 42 EARAFGDLSENAEYHAAKEEQEKLESRIMWLEYQLSKAKVVESSDIDTSTVSLGATVQLR 101 Query: 64 NLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLE 123 +L G LV + ++S +PVG A++G G+ + +P G HL + Sbjct: 102 DLDTGNTYTYVLVGSEEADPKANRISAQSPVGKAIIGRAEGEEVIVRVPKGT-RHLRIER 160 Query: 124 LE 125 + Sbjct: 161 IS 162 >UniRef50_UPI0001C3129D transcription elongation factor GreA n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C3129D Length = 161 Score = 106 bits (265), Expect = 2e-22, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 8/131 (6%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPI--------ADALNAELDRAQMCSPEEMPHDV 53 R + +A + E Y L +L A + + DV Sbjct: 26 KRREVAARIKEAREFGDISENAEYDDAKNEQAMLESKIAQLEEKLRAATVIDSRSVGTDV 85 Query: 54 VTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPG 113 V + S V+ + G+ +V A+ + +LS +PVG AL+G + G++ +LP Sbjct: 86 VGIGSSVQVADSQSGKSDTYVIVGSAEANPAERKLSNESPVGKALIGRKAGETATVQLPN 145 Query: 114 GVATHLEVLEL 124 G L + ++ Sbjct: 146 GKQRELRITKI 156 >UniRef50_Q2LR03 Transcription elongation factor greA n=1 Tax=Syntrophus aciditrophicus SB RepID=GREA_SYNAS Length = 161 Score = 106 bits (265), Expect = 2e-22, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 10/130 (7%) Query: 8 INDLDAERI-DILLEQPAYAGLPI--------ADALNAELDRAQMCSPEEMPHDVVTMNS 58 I D++ R L E Y L L + + + + D + + Sbjct: 30 IKDIEIARAHGDLSENAEYTAAKEKQSFLHGKLQELENNLALSNVIDLKMLSDDRIVFGA 89 Query: 59 RVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATH 118 V S G+ LV P + S ++SV +P+G AL+G +GD + PGG + Sbjct: 90 TVIIEEASTGKQTNYQLVGPFESNISENKISVTSPIGKALIGKSIGDEVKVHTPGG-IRN 148 Query: 119 LEVLELEYQP 128 EV+++ P Sbjct: 149 FEVVDIYINP 158 >UniRef50_A7HDS3 Transcription elongation factor GreB n=3 Tax=Myxococcales RepID=A7HDS3_ANADF Length = 169 Score = 106 bits (265), Expect = 2e-22, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 55/136 (40%), Gaps = 10/136 (7%) Query: 1 MSRPTIIINDLDAERIDILLEQPAY--------AGLPIADALNAELDRAQMCSPEEMPHD 52 + RP I+ A + E Y L+ +D + P PH Sbjct: 32 VDRPKIVAEVEAAAALGDRSENAEYVYGKKKLRELDRRLRFLSERMDALTVVDPRPHPHG 91 Query: 53 VVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELP 112 + V + +GE R LV P + + +SV AP+G ALLG + GD++ + P Sbjct: 92 RAFFGAWVTIED-DEGEARTFRLVGPDEFDVAAGLISVEAPLGRALLGKQEGDTVLFLRP 150 Query: 113 GGVATHLEVLELEYQP 128 G A L ++ + + P Sbjct: 151 AGEA-ELTIMAVRWSP 165 >UniRef50_A0AIU5 Transcription elongation factor greA n=99 Tax=Bacteria RepID=GREA_LISW6 Length = 160 Score = 106 bits (265), Expect = 2e-22, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 54/132 (40%), Gaps = 9/132 (6%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADA--------LNAELDRAQMCSPEEMPHD 52 + R ++ A L E Y A + + AQ+ E + Sbjct: 27 VKRKEVVERIKIARSFGDLSENSEYDSAKDEQAFVEGRITTIENMIRNAQIIDAAEAHNG 86 Query: 53 VVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELP 112 +VT+ + V F L DGE T+V A+ ++S +P+ LLG + G+ + + P Sbjct: 87 LVTLGNTVTFIELPDGEEETYTIVGSAEADPFEGKISNDSPIAKGLLGHKEGEEVTIQTP 146 Query: 113 GGVATHLEVLEL 124 G ++++ ++ Sbjct: 147 AG-DMNVKIEKI 157 >UniRef50_A0LZA7 Transcription elongation factor n=1 Tax=Gramella forsetii KT0803 RepID=A0LZA7_GRAFK Length = 146 Score = 105 bits (263), Expect = 4e-22, Method: Composition-based stats. Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 6/129 (4%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGL----PIADALNAELDRAQMCSPEEMPHDVVTM 56 M +II + + + ++ Y LN EL A++ + EMP DV+ + Sbjct: 1 MRYGELIIEKKEYDFLKQIMSLAKYHKDTSYKASIYKLNEELKDARILTNSEMPLDVIRL 60 Query: 57 NSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVA 116 NS V R +V P K ++SV+AP+G AL G GD+I W P G + Sbjct: 61 NSLVTIE-TPYAVERTYQIVTPEKGDIRKNKISVLAPMGLALFGYAQGDNITWTFPLGES 119 Query: 117 THLEVLELE 125 ++++ E++ Sbjct: 120 -YIKIKEVK 127 >UniRef50_C7GYY1 Transcription elongation factor n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GYY1_9FIRM Length = 158 Score = 105 bits (263), Expect = 4e-22, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 49/117 (41%), Gaps = 6/117 (5%) Query: 9 NDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDG 68 ++ DA + + L L+ ++ DVV + V +N++ Sbjct: 47 SEYDAAKNEQ------AELEERISVLEDMLNNYEIIDSNAAKGDVVDLGLNVHLKNITKK 100 Query: 69 EVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 + +V A+ N +S +P+G LL +VG+++ ++P G ++L++ Sbjct: 101 KEETYRIVGSAEADPFNNLISNESPIGKGLLKHKVGETVSIDIPSGKTVKYKILKIS 157 >UniRef50_A5FHU8 GreA/GreB family elongation factor n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FHU8_FLAJ1 Length = 132 Score = 105 bits (262), Expect = 5e-22, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 2/123 (1%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 PT +D R +++L+ A+ L+ ELDRA + E+ V+ +NS V Sbjct: 3 PTPTFCKSDYQFLR-ELILKSKNSTNTKEANQLSQELDRAVISKESELDSSVIRINSLVT 61 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEV 121 ++ + +V P+ +++S++AP+ A++G + D + WELP G L++ Sbjct: 62 IEDVKANKQMKIQIVLPSYADVKQSKISILAPLSVAIIGFKENDEVDWELPAG-IKTLKI 120 Query: 122 LEL 124 + + Sbjct: 121 VAV 123 >UniRef50_C6WVB7 GreA/GreB family elongation factor n=2 Tax=Methylophilaceae RepID=C6WVB7_METML Length = 168 Score = 104 bits (260), Expect = 9e-22, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 55/122 (45%), Gaps = 7/122 (5%) Query: 11 LDAERIDILLEQPAYAG-----LPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNL 65 + R+ + + + A LD A + P + H+ V + ++ + Sbjct: 48 AELNRLKLTADDTFAKDKVAEIERDLRYVRARLDSAILVDPTKQSHETVLFGATIEVED- 106 Query: 66 SDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 G +V + S ++S ++P+ +LLG +VGD++ W+ P G +LE+L++ Sbjct: 107 GAGAQHTFHIVGEDEADASINKVSWVSPLAKSLLGQKVGDTVTWQRPAG-NINLEILDIH 165 Query: 126 YQ 127 YQ Sbjct: 166 YQ 167 >UniRef50_A0LK20 Transcription elongation factor greA n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=GREA_SYNFM Length = 156 Score = 104 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 9/132 (6%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPI--------ADALNAELDRAQMCSPEEMPHDV 53 RP +I +A + E Y L ++ ++ P + + Sbjct: 25 ERPMVIRAIEEARSHGDISENAEYEAAKEKQAMIEGRIQDLCQKMGECEIVEPSDNDNGR 84 Query: 54 VTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPG 113 S V + GEV LV P + + +SV++P+G AL+G G+ I + P Sbjct: 85 AIFGSTVVVEDTETGEVTSYRLVGPYEADVQSGTISVVSPLGKALIGKEEGEEIRVQTPK 144 Query: 114 GVATHLEVLELE 125 G ++EVLE+ Sbjct: 145 G-VRNIEVLEIR 155 >UniRef50_C9RNS9 GreA/GreB family elongation factor n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RNS9_FIBSS Length = 169 Score = 103 bits (258), Expect = 1e-21, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 53/134 (39%), Gaps = 9/134 (6%) Query: 1 MSRPTIIINDLDAERIDILLEQPAY--------AGLPIADALNAELDRAQMCSPEEMPHD 52 + RP +I A E AY L+ LD AQ+ Sbjct: 37 VERPAMINQVQAAAAEGDRSENAAYTYGRMRVREIDRRLRELDRILDGAQIVENAATKDG 96 Query: 53 VVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELP 112 + + VK + ++ ++V ++ ++S+ +P+G AL G + GD++ + P Sbjct: 97 SIRFGATVKMIDKKTKREKIYSIVGDKEIDPLQGRISMKSPIGEALQGKKAGDTVEVQAP 156 Query: 113 GGVATHLEVLELEY 126 G E+LE+ Y Sbjct: 157 RGKIV-YEILEVNY 169 >UniRef50_A3PS97 GreA/GreB family elongation factor n=4 Tax=Rhodobacter sphaeroides RepID=A3PS97_RHOS1 Length = 137 Score = 103 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 40/127 (31%), Positives = 61/127 (48%), Gaps = 2/127 (1%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 SRP I + ++ R+D L +A L +L A++ +P + DVVT+ S V Sbjct: 8 SRPAIDMTLIE--RLDTLAGAAIARLPDVAYPLITKLTSARLLAPARLSSDVVTIGSEVL 65 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEV 121 + + R TL +P S +S++ PVG ALLGL GD W+ G L V Sbjct: 66 YHDDQGARDRRVTLSWPEDADISRRSVSILTPVGVALLGLSAGDRFQWQTRAGERRSLTV 125 Query: 122 LELEYQP 128 L++ +P Sbjct: 126 LQVGSEP 132 >UniRef50_Q98F07 Nucleoside diphosphate kinase regulator; Rnk n=2 Tax=Mesorhizobium RepID=Q98F07_RHILO Length = 180 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 1/132 (0%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 M + D ++++LE+ PI L +L A + + + D+VT+NSRV Sbjct: 1 MKSTNCCLTTKDRAVLEVMLERRRAFADPIVHVLEHKLSSADVVPIDTVGPDIVTLNSRV 60 Query: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE 120 F ++ G + RTLV + LSV G +LG+ G + E G + Sbjct: 61 VF-SIDAGHAQTRTLVQNEVRGPVGSSLSVATRRGLCMLGMAQGQTASIEHADGRRESIL 119 Query: 121 VLELEYQPEAAG 132 + + YQPEAAG Sbjct: 120 IKAVLYQPEAAG 131 >UniRef50_A7HXN2 GreA/GreB family elongation factor n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HXN2_PARL1 Length = 133 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 42/122 (34%), Positives = 66/122 (54%), Gaps = 1/122 (0%) Query: 4 PTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFR 63 P I++ + + + + E +A L+ EL+RA++ +P DVV +NS V+F Sbjct: 10 PQIVVAEEQFDALSDIAEGLTGVLPHVAGFLDRELNRARLLPLAHVPSDVVKVNSTVEFT 69 Query: 64 NLSDGE-VRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVL 122 + GE V L +PA+ T + +S+ +PVG ALLGLR G SI W G L+VL Sbjct: 70 LDTRGERVERLKLAFPAESTAGDGYVSIASPVGVALLGLREGQSIEWTSRYGERRSLKVL 129 Query: 123 EL 124 ++ Sbjct: 130 KV 131 >UniRef50_Q096W9 Transcription elongation factor GreB n=1 Tax=Stigmatella aurantiaca DW4/3-1 RepID=Q096W9_STIAU Length = 144 Score = 102 bits (256), Expect = 2e-21, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 47/135 (34%), Gaps = 11/135 (8%) Query: 1 MSRPTIIINDLDAERIDILLEQPAY--------AGLPIADALNAELDRAQMCSPEE-MPH 51 + RP + A E Y L LD A + +P E Sbjct: 11 VERPKVTAEVSAAAAQGDRSENAEYIYGKKRLREIDRRIRFLQKRLDTATIVTPAEQTDQ 70 Query: 52 DVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWEL 111 V + V + G +V ++ ++SV +P+G ALL VGDS+ Sbjct: 71 GRVYFGATVTLEDED-GVQTTYQIVGSDEIDTQGGRISVESPIGKALLRKAVGDSVEVMR 129 Query: 112 PGGVATHLEVLELEY 126 P G L ++ + Y Sbjct: 130 PRGEI-ELTIVAIAY 143 >UniRef50_B4W8F1 Putative uncharacterized protein n=1 Tax=Brevundimonas sp. BAL3 RepID=B4W8F1_9CAUL Length = 141 Score = 102 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 3/131 (2%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 SRP I ++ D + + L+ G +A L EL+RA +C P + P ++ + Sbjct: 12 SRPDIFLSARDHQTLSRLVGDMPAEG--VAGLLQEELERAVICEPGDRPRGAAPLHRWLH 69 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEV 121 + + + R +V P + ++SV++ VGA L+GL G +I W P G L Sbjct: 70 YVDGRSPQPRRIQIVLPNEADIDAGKVSVLSYVGAGLIGLVEGHTIAWTDPSGADRRLTP 129 Query: 122 LELEYQPEAAG 132 + +E PE G Sbjct: 130 VMIE-DPETPG 139 >UniRef50_Q67JL1 Transcription elongation factor n=2 Tax=Clostridiales RepID=Q67JL1_SYMTH Length = 157 Score = 102 bits (255), Expect = 3e-21, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 9/121 (7%) Query: 13 AERIDILLEQPAYAGLPIADA--------LNAELDRAQMCSPEEMPHDVVTMNSRVKFRN 64 A + E Y A L L A++ +VV + S V R+ Sbjct: 38 AREYGDISENSEYEDAKNEQAFIEGRILVLEKMLRNARVIDEPVGQQEVVVLGSTVVLRD 97 Query: 65 LSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 L G+ T+V + ++ ++S +PVG A++G RVG + + P GV E++ + Sbjct: 98 LEYGDEHTYTIVGTTEADPAHNRISNESPVGRAIMGQRVGTVVAVDAPDGVF-KYEIVAI 156 Query: 125 E 125 + Sbjct: 157 K 157 >UniRef50_A8SDG2 Transcription elongation factor n=2 Tax=Clostridiales RepID=A8SDG2_9FIRM Length = 161 Score = 102 bits (254), Expect = 5e-21, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 41/109 (37%) Query: 18 ILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVY 77 + L + A + E+ D V++ + V R + E +V Sbjct: 50 DEAKNTQGLVENRITELEQTIKNAVIIDESELSVDNVSVGTHVTIRETGEDEAEEYDIVG 109 Query: 78 PAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 + N ++S +PVG AL+G VGD LP G VL + + Sbjct: 110 RTEADAFNGKISDESPVGHALMGKAVGDKAEVLLPTGQTVVYTVLAITH 158 >UniRef50_C9KJ19 Transcription elongation factor n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KJ19_9FIRM Length = 156 Score = 102 bits (254), Expect = 5e-21, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 11/118 (9%) Query: 16 IDILLEQPAYAGLP--------IADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSD 67 + L E Y L A++ + + DVV M S+V +++ Sbjct: 41 LGDLSENSEYDDAKNEQAFLEGEIQDLTAKIRNSHIIKAGA--GDVVQMGSKVTVKDIEF 98 Query: 68 GEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 G+ LV + ++S +P+G ALLG + G I P G E+L+++ Sbjct: 99 GDEETFMLVGSTEADPDEGKISNESPLGQALLGQKSGSVIDVHAPAG-IIKYEILDIK 155 >UniRef50_C7CFG6 Putative regulator n=1 Tax=Methylobacterium extorquens DM4 RepID=C7CFG6_METED Length = 149 Score = 101 bits (253), Expect = 6e-21, Method: Composition-based stats. Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 1/122 (0%) Query: 4 PTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFR 63 P I + D +R+ G AD L EL RA +C P +P +VV++N RV +R Sbjct: 8 PPITVTTRDFDRLVAFSLDAHLRGDSHADFLLWELKRATLCPPCALPSEVVSVNCRVLYR 67 Query: 64 NLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHW-ELPGGVATHLEVL 122 + VRV L +P + + LSV +P+G ALLGLRVGD + + + G + V Sbjct: 68 LDDEPGVRVHLLAHPDDLINLADGLSVASPLGTALLGLRVGDRMPFCDNRLGTQHVVTVE 127 Query: 123 EL 124 + Sbjct: 128 GI 129 >UniRef50_C0QWD9 Transcription elongation factor n=2 Tax=Brachyspira RepID=C0QWD9_BRAHW Length = 154 Score = 101 bits (252), Expect = 8e-21, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 12/130 (9%) Query: 4 PTIIINDLDAERIDILLEQPAYAGLPI--------ADALNAELDRAQMCSPEEMPHDVVT 55 P II +A L E Y L ++L ++ P + D VT Sbjct: 28 PAII---AEAREKGDLKENAEYHAAKEKQGLLNAQISKLESDLAGCEIIDPANLDKDTVT 84 Query: 56 MNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGV 115 RVK ++ S V +V + S +++++ P+ LLG ++GD + ++P G Sbjct: 85 FGKRVKVKDKSRNAVFEYRIVGELEADMSKNEITIVTPIAKGLLGKKIGDVVTIKVPAG- 143 Query: 116 ATHLEVLELE 125 LE+LE+ Sbjct: 144 DKVLEILEIS 153 >UniRef50_Q817Z6 Transcription elongation factor greA n=141 Tax=cellular organisms RepID=GREA_BACCR Length = 158 Score = 101 bits (252), Expect = 8e-21, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 52/117 (44%), Gaps = 7/117 (5%) Query: 9 NDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDG 68 ++ DA + + + L + A + VVT+ V F+ L +G Sbjct: 49 SEYDAAKDEQAFVEGR------ITQLENMIRNAVIIKDTGEVSTVVTLGKTVTFKELPNG 102 Query: 69 EVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 + T+V A+ ++S +P+ +LLG ++G+ + + PGG +E++ ++ Sbjct: 103 DEEAYTIVGSAEADPFEGRISNDSPIAKSLLGKQIGEKVTIQTPGGE-MQVEIVSVK 158 >UniRef50_Q1QUF3 GreA/GreB family elongation factor n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QUF3_CHRSD Length = 178 Score = 100 bits (251), Expect = 9e-21, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 10/138 (7%) Query: 1 MSRPTIIINDLDAERIDILLEQPAY--------AGLPIADALNAELDRAQMCSPEEMPHD 52 + RP + +A + E Y + L LD Q+ Sbjct: 43 VKRPALSTKVGEAAALGDRSENADYTYNKKELNRVIARIRYLGKRLDELQVVDRLPADTS 102 Query: 53 VVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELP 112 V + V + DGE +V + +SV AP+ A+LG + + + P Sbjct: 103 RVYFGAYVTLED-DDGEEMTIRIVGHDETDTDKRWISVDAPLAQAMLGKGLDEDVTVNAP 161 Query: 113 GGVATHLEVLELEYQPEA 130 GG T++ + ++ Y PEA Sbjct: 162 GGDTTYI-ITDIAYDPEA 178 >UniRef50_Q2Z001 Transcription elongation factor n=1 Tax=uncultured candidate division OP8 bacterium RepID=Q2Z001_9BACT Length = 156 Score = 100 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 51/134 (38%), Gaps = 9/134 (6%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLP--------IADALNAELDRAQMCSPEEMPHD 52 + RP + +A L E + L + A + P ++ + Sbjct: 24 VDRPANVKAIEEARGHGDLRENADFKCAKDEQAMIVGRIAYLQGRISHAAVIDPSKLSGN 83 Query: 53 VVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELP 112 V +RV +NL GE V LV + +S+ +P+ L+ VG+ +P Sbjct: 84 RVVFGARVFLKNLDTGEPIVYRLVGEDEADIEQGSISITSPLARGLIRREVGEQAKIAVP 143 Query: 113 GGVATHLEVLELEY 126 G E++++E+ Sbjct: 144 SG-IKSFEIVKIEF 156 >UniRef50_B4RBL2 Transcription elongation factor n=1 Tax=Phenylobacterium zucineum HLK1 RepID=B4RBL2_PHEZH Length = 143 Score = 100 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 2/126 (1%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 S P + + D + + ++ P L EL RA + P DVV + S V+ Sbjct: 9 SNPRVTVLDEEYAPLADIVCGSP-RATPGLALLWNELSRATLVQAGRAPADVVRLGSAVE 67 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEV 121 + +L+ E R LV P + + V +GAALLGLR GD HW P G L+V Sbjct: 68 YTDLTRRESRRIRLVLPREARPPALE-PVSGTIGAALLGLRPGDVFHWRAPSGELRSLQV 126 Query: 122 LELEYQ 127 +E Sbjct: 127 DAVEPP 132 >UniRef50_A6EMP4 Transcription elongation factor n=4 Tax=Bacteroidetes RepID=A6EMP4_9BACT Length = 139 Score = 100 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 6/129 (4%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIAD----ALNAELDRAQMCSPEEMPHDVVTM 56 M ++II + + +L YA LN EL A + EEMP DV+ Sbjct: 1 MKYGSVIIEKKEYVFLKRILNISGYAADFEIQKSFKRLNEELKTAIIVDEEEMPTDVIRF 60 Query: 57 NSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVA 116 NS+V + +G + +V PA ++S++ +GAAL G GD++ WE P G Sbjct: 61 NSQV-LISTKNGWKKEFQIVSPALKDVKADKISILTVMGAALFGYAQGDTVEWEFPTGKN 119 Query: 117 THLEVLELE 125 + + ++ Sbjct: 120 L-ITIEKVA 127 >UniRef50_B9XEY1 GreA/GreB family elongation factor n=1 Tax=bacterium Ellin514 RepID=B9XEY1_9BACT Length = 170 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 2/95 (2%) Query: 33 ALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMA 92 L L A++ P P + V + V R+ G +V + +S ++ Sbjct: 78 QLEQSLATAEIVPPPPQPWEQVRFGATVTVRD-ESGNETRYRIVGVDETDIDRDWVSWLS 136 Query: 93 PVGAALLGLRVGDSIHWELPGGVATHLEVLELEYQ 127 P+ AL+ R+G+ +H+ P G LE++ + Y+ Sbjct: 137 PIARALINARIGERVHFRFPAGEKQ-LEIVSITYE 170 >UniRef50_A5CVW9 Transcription elongation factor greA n=4 Tax=Gammaproteobacteria RepID=GREA_VESOH Length = 159 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 51/135 (37%), Gaps = 10/135 (7%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPI--------ADALNAELDRAQMCSPEEMPHD 52 +SRP II + A L E Y + +L R Q+ ++ D Sbjct: 24 VSRPRIIEDIRIARAHGDLKENAEYHAAKEEQSFVEGRIKEIELKLSRMQIIDVTKLSQD 83 Query: 53 -VVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWEL 111 + + N D +V + S ++S +P+ +AL+G GD + + Sbjct: 84 GRCVFGTTITLMNSVDNSEITYQIVGEDEADISLDKISCHSPIASALMGNEEGDKVIVKA 143 Query: 112 PGGVATHLEVLELEY 126 P G ++L +EY Sbjct: 144 PKGDIV-YKILSVEY 157 >UniRef50_C1XQ58 Transcription elongation factor n=2 Tax=Meiothermus RepID=C1XQ58_9DEIN Length = 159 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 2/108 (1%) Query: 20 LEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPA 79 + + L + L RA + V + V+ G T+V Sbjct: 54 ARRAQWDNDRRISELESILARAVVVEAGNGTPLEVGLGVSVELE-TDTGARMSLTIVGSH 112 Query: 80 KMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEYQ 127 + N ++S +P+G L+G +VGD + + P G ++EL Y+ Sbjct: 113 EADVFNGKISNESPMGQRLMGKKVGDRVEYPSPKG-VQSYTIVELSYK 159 >UniRef50_Q30T56 Transcription elongation factor n=3 Tax=Campylobacterales RepID=Q30T56_SULDN Length = 174 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 9/135 (6%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADA--------LNAELDRAQMCSPEEMPHD 52 + +P L A + E Y LNA + +A + P + H Sbjct: 23 VEKPKTAQEKLVAAALGDRSENADYQAAKEKLRHIDKRLFYLNAMIQKAHIIDPSTLLHT 82 Query: 53 VVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELP 112 V+ S V+ +L + V T+ + N +S+ +P+ +LG RV D +LP Sbjct: 83 KVSFGSSVRILDLESDKEEVYTICGVLESEPENGLISIHSPLAQVMLGKRVSDEFKIQLP 142 Query: 113 GGVATHLEVLELEYQ 127 + E+LE+ Y+ Sbjct: 143 L-MKKEYEILEIYYK 156 >UniRef50_Q2Y7V5 GreA/GreB family elongation factor n=33 Tax=cellular organisms RepID=Q2Y7V5_NITMU Length = 213 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 52/136 (38%), Gaps = 12/136 (8%) Query: 2 SRPTIIINDLDAERIDILLEQPAY--------AGLPIADALNAELDRAQMCSPEEMPHDV 53 RP + A E Y L LD A++ P D Sbjct: 53 ERPQVTATVSWAAANGDRSENADYIYGKKRLREIDRRIRFLTRRLDMAEIIDPSMPREDE 112 Query: 54 --VTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWEL 111 + + V + N GE ++ ++V ++ + +S ++P+ LL R GD + Sbjct: 113 SRIFFGATVTYINEK-GEEKIVSIVGVNEIDTTRGYISWVSPLARTLLKAREGDVVTLHA 171 Query: 112 PGGVATHLEVLELEYQ 127 PGG LE+LE+ YQ Sbjct: 172 PGGTE-ELEILEVRYQ 186 >UniRef50_Q0BR49 Transcription elongation factor greB n=4 Tax=cellular organisms RepID=Q0BR49_GRABC Length = 169 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 55/138 (39%), Gaps = 11/138 (7%) Query: 2 SRPTIIINDLDAERIDILLEQPAY--------AGLPIADALNAELDRAQMCSPEEMP-HD 52 RP I+ A E Y L L+ A + P P D Sbjct: 34 ERPKIVEIVSWAAGNGDRSENGDYLYGKKRLREIDRRVRFLTKRLENAVVIDPATQPHKD 93 Query: 53 VVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELP 112 + + V + N +D E T+V + + ++S+++PV ALLG GD + P Sbjct: 94 RIYFGATVTYINAAD-ETVQVTIVGADEADMALGRISLLSPVAKALLGASKGDEVTVITP 152 Query: 113 GGVATHLEVLELEYQPEA 130 L++L+++Y+P A Sbjct: 153 V-KTEILDILDVDYRPLA 169 >UniRef50_A6W1U9 Transcription elongation factor GreB n=17 Tax=Gammaproteobacteria RepID=A6W1U9_MARMS Length = 196 Score = 99.8 bits (248), Expect = 2e-20, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 49/133 (36%), Gaps = 10/133 (7%) Query: 2 SRPTIIINDLDAERIDILLEQPAY--------AGLPIADALNAELDRAQMCSPEEMPHDV 53 RP + +A E Y L L+ + + Sbjct: 61 KRPAVTETVREAAAQGDRSENAEYIYGKKQLREIDRRVRYLEKRLEVCTVVDRFPSDQER 120 Query: 54 VTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPG 113 V + V + G ++ +V P ++ ++ +S+ +PV ALL + GD + L G Sbjct: 121 VFFGAWVTLED-EAGNLKEYRIVGPDELDHHSSYISIDSPVARALLKKQEGDEVVIRLAG 179 Query: 114 GVATHLEVLELEY 126 G T++ + +EY Sbjct: 180 GEKTYI-IDAVEY 191 >UniRef50_Q03RN4 Transcription elongation factor n=1 Tax=Lactobacillus brevis ATCC 367 RepID=Q03RN4_LACBA Length = 132 Score = 99.8 bits (248), Expect = 2e-20, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 10/132 (7%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADA--------LNAELDRAQMCSPEEMPHD 52 + RP +I A L E Y + + L AQ+ ++ D Sbjct: 2 VQRPKVIDRIKIARSYGDLSENSEYESAKDEQSMLETRISTVERMLQYAQIIDNDDTDKD 61 Query: 53 VVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELP 112 +T+ +V F+ D E T+V A+ + ++S +P+ LLG RVG+++ + P Sbjct: 62 EITVGKKVTFQ-EDDDEPEEYTIVGAAEADPMSGKISNDSPIAKGLLGHRVGETVTFPTP 120 Query: 113 GGVATHLEVLEL 124 GG ++V+ + Sbjct: 121 GG-DMTVKVIAV 131 >UniRef50_B8IHN9 GreA/GreB family elongation factor n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IHN9_METNO Length = 147 Score = 99.8 bits (248), Expect = 2e-20, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 1/122 (0%) Query: 4 PTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFR 63 P I I++ D +R+ + G L +EL+RA +C E+P VV+ N RV +R Sbjct: 8 PPITISNYDFDRLVVYGLTAYMHGDRNVVFLFSELERATVCPAMELPDQVVSANCRVIYR 67 Query: 64 NLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHW-ELPGGVATHLEVL 122 + +R LV+P + + ++S +P+G ALLGL+VGD + + + G + V Sbjct: 68 IDDEPCLRAHMLVHPCDLISPDDEISAGSPLGIALLGLKVGDRMPFCDTQTGGRHVVAVE 127 Query: 123 EL 124 + Sbjct: 128 GV 129 >UniRef50_Q3Z8E7 Transcription elongation factor greA n=2 Tax=Dehalococcoides RepID=GREA_DEHE1 Length = 156 Score = 99.5 bits (247), Expect = 3e-20, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 9/118 (7%) Query: 17 DILLEQPAYAGLPIAD--------ALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDG 68 + E Y + EL A + + V M S VK R+ +G Sbjct: 40 KDMRENAPYHAAKEQRGQIEGRIKEIEHELKYADVSEYTDTNTSKVNMGSTVKLRDPKNG 99 Query: 69 EVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 E TLV P ++ ++S +P+G A+ G+ I E+P G ++ + ++ + Sbjct: 100 ECCTYTLVSPKEIEPLKGKISASSPIGKAVFNRNKGEQIEIEVPSGTLQYI-IEDISF 156 >UniRef50_Q3ATA7 Transcription elongation factor greA n=13 Tax=Bacteria RepID=GREA_CHLCH Length = 160 Score = 99.1 bits (246), Expect = 3e-20, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 10/136 (7%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADA--------LNAELDRAQMCSPEEMPHDV 53 +R ++ +A L E Y + L ++L A + P+++ D Sbjct: 26 TRKEVLEKIAEARAHGDLSENAEYDAAREEQSQIEARIGDLESKLSAATILDPKQIKTDK 85 Query: 54 VTMNSRVKFRNLSD-GEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELP 112 V + + VK RNL + E+ TLV + ++SV +PVG +L+G VG + +P Sbjct: 86 VYILTSVKLRNLDNPDEIIEYTLVSSEEADTDAGKISVRSPVGRSLIGKTVGAKVTIVVP 145 Query: 113 GGVATHLEVLELEYQP 128 G H E+LE+ +P Sbjct: 146 KGE-LHYEILEIFVKP 160 >UniRef50_C1F9R4 Transcription elongation factor GreA n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F9R4_ACIC5 Length = 165 Score = 99.1 bits (246), Expect = 3e-20, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 9/119 (7%) Query: 13 AERIDILLEQPAYAGLPIADA--------LNAELDRAQMCSPEEMPHDVVTMNSRVKFRN 64 A + L E Y L + + + +PHD V S V+ + Sbjct: 31 AAALGDLSENAEYHMAKQRQEFVNARLGQLKKRMAELSLVNLANIPHDRVAFGSTVEVFD 90 Query: 65 LSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLE 123 S E LV + S +S +P+G AL+G +VGD+ P G LEVL+ Sbjct: 91 TSKDEKIEYKLVTSEESDVSKGLISTTSPIGRALIGKQVGDTATVVTPSG-NRELEVLK 148 >UniRef50_C8S319 GreA/GreB family elongation factor n=1 Tax=Rhodobacter sp. SW2 RepID=C8S319_9RHOB Length = 167 Score = 99.1 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 52/118 (44%), Gaps = 6/118 (5%) Query: 14 ERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVR 73 ER+D L E L A L A P P V +RV+ L+DG +V Sbjct: 55 ERLDKLPEAA---AERDIRYLEARLRSAIPVDPSSQPAGEVAFGARVEVA-LADGSRQVW 110 Query: 74 TLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEY-QPEA 130 + + + +++ +P+ ALLG VGD + W P G LEVL + Y P+A Sbjct: 111 QITGEDEADATQNRIAPQSPLARALLGAEVGDLVIWRKPSG-PVELEVLAIAYADPQA 167 >UniRef50_A3HZU2 Transcription elongation factor GreB n=2 Tax=Bacteroidetes RepID=A3HZU2_9SPHI Length = 166 Score = 98.7 bits (245), Expect = 5e-20, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 43/104 (41%), Gaps = 1/104 (0%) Query: 23 PAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMT 82 + L+ + A++ E P + + ++V + + LV + Sbjct: 64 ASNFISAKIKLLDERIATAKIVDLSEQPKNEIRFGAKVTLKIGKSPKAMTYQLVGVDEAD 123 Query: 83 DSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 S ++S ++P+ L+G +VG+ L G EV+E++Y Sbjct: 124 ISKNKISFISPIAMILIGKKVGEKATLSLTKG-DRVFEVMEIKY 166 >UniRef50_C4Z9L9 Transcription elongation factor n=3 Tax=Firmicutes RepID=C4Z9L9_EUBR3 Length = 185 Score = 98.7 bits (245), Expect = 5e-20, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 9/137 (6%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAG--------LPIADALNAELDRAQMCSPEEMPHD 52 + R + +A L E Y + + L A++ EE+ D Sbjct: 49 VKRKEVSQKIKEAREQGDLSENAEYDAAKDEQRDIEARIEEIEKILKNAEVVVEEEVDLD 108 Query: 53 VVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELP 112 +++ +++ + E +V + ++S +PVG ALLG +VGD++ E Sbjct: 109 KISIGCKIRILDCEFDEELEYKIVGSTEANSLKGKISNESPVGKALLGKKVGDTVTVETQ 168 Query: 113 GGVATHLEVLELEYQPE 129 G +VLE++ E Sbjct: 169 VGE-LTYKVLEIQRAEE 184 >UniRef50_Q98Q16 Transcription elongation factor greA n=3 Tax=Mycoplasma RepID=GREA_MYCPU Length = 157 Score = 98.7 bits (245), Expect = 5e-20, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 48/132 (36%), Gaps = 12/132 (9%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPI--------ADALNAELDRAQMCSPEEMPHD 52 + RP +I+ +A + L E Y L L A D Sbjct: 27 VERPAVILEIKEARQQGDLSENAEYDAAREKQGQIEDRITELENILSNAISIQESH--SD 84 Query: 53 VVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELP 112 + + S V+ N S G+ R +V + ++S +P+ +++G GD + + P Sbjct: 85 KIGLGSVVRILNQSTGKERTFKIVGSFDTDPTQNKISYESPLAKSIIGFSKGDVVEIDAP 144 Query: 113 GGVATHLEVLEL 124 ++L + Sbjct: 145 D--KYTTKILSV 154 >UniRef50_C7PP41 Transcription elongation factor n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PP41_CHIPD Length = 157 Score = 98.3 bits (244), Expect = 6e-20, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 45/116 (38%), Gaps = 7/116 (6%) Query: 9 NDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDG 68 + DA + + L + + A++ + + V++ +V N+++ Sbjct: 47 AEYDAAK------EAQGMHEAKVAILESAIATARIVEADSIDTSKVSILCKVTITNMANK 100 Query: 69 EVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 + LV + ++SV +P+G LLG VG+ P G ++ + Sbjct: 101 KTVTYQLVSEKEADLKLNKISVTSPIGKGLLGKAVGEIADVHAPNGS-LKFKIENI 155 >UniRef50_Q01RT9 GreA/GreB family elongation factor n=2 Tax=Acidobacteria RepID=Q01RT9_SOLUE Length = 164 Score = 98.3 bits (244), Expect = 6e-20, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 10/119 (8%) Query: 14 ERI-DILLEQPAYAGLPIAD--------ALNAELDRAQMCSPEEMPHDVVTMNSRVKFRN 64 R+ L E Y L + L + M ++P D + S V + Sbjct: 30 ARLHGDLKENAEYHAAKDRQGFVSARLGQLKSRLGQLAMIDFTKIPRDKAGLGSTVVVLD 89 Query: 65 LSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLE 123 + + LV + N ++S +P+G ALLG VGD + PGG LE+L+ Sbjct: 90 VKSDQEITYHLVTSEEADAPNGKVSTTSPIGRALLGKTVGDEVKVMSPGG-VKELEILK 147 >UniRef50_Q1AU03 Transcription elongation factor n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AU03_RUBXD Length = 154 Score = 98.3 bits (244), Expect = 6e-20, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 2/107 (1%) Query: 20 LEQPAYAGLPIADALNAELDRAQMCSP-EEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYP 78 + L L A++ P V + +RV R + DG R +V Sbjct: 46 AKNEQGLLERRISELQRRLRNAKIVDPASSAEEGAVDLGTRVTLRVVGDGRERTFQIVGA 105 Query: 79 AKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 + ++ +LS +PVG ALL RVG+ + P G E++ +E Sbjct: 106 NEADPASGKLSHASPVGKALLRRRVGEKVRVSTPRGAT-EYEIVSVE 151 >UniRef50_D0J5N8 Kelongation factor GreB n=4 Tax=Proteobacteria RepID=D0J5N8_COMTE Length = 231 Score = 98.3 bits (244), Expect = 7e-20, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 52/135 (38%), Gaps = 11/135 (8%) Query: 2 SRPTIIINDLDAERIDILLEQPAY--------AGLPIADALNAELDRAQMCSPE-EMPHD 52 RP I+ A E Y L L+ A++ P D Sbjct: 93 ERPKIVEIVHWAASNGDRSENGDYLYGKKRLREIDRRIRFLTKRLEIAEVVDPAVHAGSD 152 Query: 53 VVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELP 112 V + V + + +G R T++ + + Q+S +APV ALL RVGD + P Sbjct: 153 QVFFGATVSYVD-DEGVERTITIMGIDEADSAQNQVSWIAPVSRALLKARVGDEVALPTP 211 Query: 113 GGVATHLEVLELEYQ 127 G LE+L++ Y Sbjct: 212 AG-VRMLEILDVSYP 225 >UniRef50_Q1PYP5 Transcription elongation factor n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYP5_9BACT Length = 741 Score = 97.5 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 50/120 (41%), Gaps = 3/120 (2%) Query: 8 INDLDAERID--ILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNL 65 I+ D + + A+ L A+L + P + ++V+ ++V +N Sbjct: 620 ISRGDLRENAEYQAAREKQAQLIEKAERLKADLQKIVFIEPYTVKTNIVSPGTKVTIKNK 679 Query: 66 SDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 TL+ P +S ++P+G LL + G+++ +LP +++++E Sbjct: 680 DKETTETYTLLGPWDADIDKNIISYLSPIGKGLLNKKTGETVTIQLPENEIVC-DIIKIE 738 >UniRef50_C0JZV3 Transcription elongation factor GreA n=1 Tax=uncultured bacterium URE4 RepID=C0JZV3_9BACT Length = 112 Score = 97.5 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 43/95 (45%), Gaps = 1/95 (1%) Query: 31 ADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSV 90 L ++ A++ ++ D V + S+V N++ +V ++ S LS Sbjct: 18 IARLKEKVANARVIDESKLSADTVQLLSKVTVENMNAKMKMQFQIVGESEADFSKGLLSA 77 Query: 91 MAPVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 P+G AL+G G+ + ++P G ++L++ Sbjct: 78 STPIGKALMGHGKGEVVEAKVPSG-IMKFKILDIS 111 >UniRef50_D1PEW3 Transcription elongation factor n=1 Tax=Prevotella copri DSM 18205 RepID=D1PEW3_9BACT Length = 154 Score = 96.8 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 55/133 (41%), Gaps = 9/133 (6%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGL-PIADALNAE-------LDRAQMCSPEEMPHD 52 + P + +A L E Y L + L+ A++ + D Sbjct: 22 VELPAVRDAIAEARDKGDLSENFEYHAAKREQGKLLSRISFKQKVLENARVIDKSRLKSD 81 Query: 53 VVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELP 112 V + S++K NL++ T+V P + + ++S+ +P+ ALLG + G+ + ++P Sbjct: 82 TVGLLSKIKITNLANKCSMNYTIVNPHEADLHSGKISIKSPIAKALLGKKAGEEVMVKVP 141 Query: 113 GGVATHLEVLELE 125 G + +E Sbjct: 142 AG-LLKFRLDSVE 153 >UniRef50_UPI0001C37CEA transcription elongation factor GreA n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37CEA Length = 156 Score = 96.8 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 49/117 (41%), Gaps = 7/117 (5%) Query: 9 NDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDG 68 + D + + + + L +D A++ + D + M+S++ + L G Sbjct: 46 AEYDEAKNEQAILEA------HIAELQYTIDNAEIVDDSNISVDEIGMSSKITIKRLDTG 99 Query: 69 EVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 ++ T+V ++S +P+G A + RVGD + P G EV+E+ Sbjct: 100 KIETFTIVSTNHANVREGKISDASPIGKAAMKKRVGDVFIVDAPAGE-LKFEVVEIS 155 >UniRef50_D2T9B8 Transcription elongation factor greB n=3 Tax=Erwinia RepID=D2T9B8_ERWPY Length = 187 Score = 96.4 bits (239), Expect = 3e-19, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 48/133 (36%), Gaps = 10/133 (7%) Query: 2 SRPTIIINDLDAERIDILLEQPAY--------AGLPIADALNAELDRAQMCSPEEMPHDV 53 RP + A + E Y L L++ ++ Sbjct: 53 ERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCLEQLRIVDYSPQQDGK 112 Query: 54 VTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPG 113 V + V+ N DG+++ +V ++ N +S+ +P+ ALL VGD+ P Sbjct: 113 VFFGAWVEVEN-DDGDIKRFRIVGYDEIFGRNDYISIDSPMARALLKKEVGDAATVFTPA 171 Query: 114 GVATHLEVLELEY 126 G A + ++ Y Sbjct: 172 GEALWY-INDISY 183 >UniRef50_Q04HS9 Transcription elongation factor greA n=90 Tax=Bacilli RepID=GREA_STRP2 Length = 160 Score = 96.0 bits (238), Expect = 3e-19, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 56/133 (42%), Gaps = 9/133 (6%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADA--------LNAELDRAQMCSPEEMPHD 52 + RP ++ A L E Y A L ++ A++ + + + D Sbjct: 26 VRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVNSDAVAQD 85 Query: 53 VVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELP 112 V + V + + + E V +V A ++S +P+G AL+G + GD+ E P Sbjct: 86 EVAIGKTVTIQEIGEDEEEVYIIVGSAGADAFAGKVSNESPIGQALIGKKTGDTATIETP 145 Query: 113 GGVATHLEVLELE 125 G +++L++E Sbjct: 146 VGS-YDVKILKVE 157 >UniRef50_C6X3W9 Transcription elongation factor GreB n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6X3W9_FLAB3 Length = 183 Score = 96.0 bits (238), Expect = 3e-19, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 1/104 (0%) Query: 23 PAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMT 82 LN + A++ + V + V F+NL++ + LV + Sbjct: 81 AFNHLNARLQLLNGRMASAKIIDTARLSQGEVHFGATVTFKNLNNNLRQTFQLVGVDEAN 140 Query: 83 DSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 S +L+ P+ AL+ +VG+ + +L E+L + Y Sbjct: 141 ISKGKLAFTTPLAKALINSKVGEKVTLQLGDKTNI-FEILSIGY 183 >UniRef50_C1ZBG3 Transcription elongation factor n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZBG3_PLALI Length = 160 Score = 96.0 bits (238), Expect = 3e-19, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 11/119 (9%) Query: 17 DILLEQPAYAGLPI--------ADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDG 68 L E Y G ++L ++L + +P VV +RV +N DG Sbjct: 40 GDLKENAEYHGQREEQGRLQARINSLKSKLASCYIVDKSTLPKGVVAFGTRVTVKNTDDG 99 Query: 69 EVRVRTLVYPAKMTDSNT--QLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 ++ V P + + ++ +P+ +ALLG +V D + ++P G + E+ E+E Sbjct: 100 DIEKYEFVGPGEEDYMSDVMKILTTSPLASALLGKKVNDKVSIQVPRGTI-NYEITEIE 157 >UniRef50_Q8P7P8 Transcription elongation factor greB n=53 Tax=Proteobacteria RepID=GREB_XANCP Length = 168 Score = 95.6 bits (237), Expect = 4e-19, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 48/134 (35%), Gaps = 9/134 (6%) Query: 1 MSRPTIIINDLDAERIDILLEQPAY--------AGLPIADALNAELDRAQMCSPEEMPHD 52 + RP ++ A E Y L+ L+ ++ Sbjct: 33 LRRPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVRYLSKRLEALRVVDTAPTDPQ 92 Query: 53 VVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELP 112 V ++V+ + GE+ +V P + +S+ +P+ ALL RV D +LP Sbjct: 93 AVFFGAQVELEDADSGELLRYRIVGPDETDAGRGWISIDSPLARALLKKRVDDEFEAQLP 152 Query: 113 GGVATHLEVLELEY 126 G V+ +EY Sbjct: 153 SG-KHTFVVVVVEY 165 >UniRef50_Q88KH5 Transcription elongation factor greB n=84 Tax=Gammaproteobacteria RepID=GREB_PSEPK Length = 162 Score = 95.6 bits (237), Expect = 4e-19, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 45/132 (34%), Gaps = 10/132 (7%) Query: 3 RPTIIINDLDAERIDILLEQPAY--------AGLPIADALNAELDRAQMCSPEEMPHDVV 54 RP I A + E Y L L+ ++ + V Sbjct: 26 RPEITQKVAWAASLGDRSENADYQYNKKLLREIDRRVRYLRKRLEDVKVVAYSPEQEGKV 85 Query: 55 TMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGG 114 + V+ N +GE +V ++ N +S+ +P+ ALL GD + P G Sbjct: 86 FFGAWVEIEN-DEGETMKFRIVGYDEIYGRNDYISIDSPMARALLKKEEGDEVVVHTPTG 144 Query: 115 VATHLEVLELEY 126 AT V + Y Sbjct: 145 EATWY-VSSIRY 155 >UniRef50_B2KBD2 GreA/GreB family elongation factor n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KBD2_ELUMP Length = 156 Score = 95.6 bits (237), Expect = 5e-19, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 51/131 (38%), Gaps = 9/131 (6%) Query: 5 TIIINDLDAERIDILLEQPAYAGLPIADA--------LNAELDRAQMCSPEEMPHDVVTM 56 + + +A + L E YA L +L AQ+ ++ + Sbjct: 27 KLSLEIGEAAQQGDLRENAEYAAAKSRQEETLVKIQDLEQKLRNAQITDDIQVDKSEARI 86 Query: 57 NSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVA 116 + V ++S TLV + LSV +P+ ++LG + G+ LP G Sbjct: 87 GATVTVHDISADIDFTYTLVGSMESNPEKGLLSVQSPLAVSILGKKEGEEFEAVLPKGKK 146 Query: 117 THLEVLELEYQ 127 ++++LEY+ Sbjct: 147 M-YKLVKLEYK 156 >UniRef50_Q1J0L4 Transcription elongation factor n=3 Tax=Deinococcus RepID=Q1J0L4_DEIGD Length = 156 Score = 95.2 bits (236), Expect = 5e-19, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 6/122 (4%) Query: 8 INDLDAERIDILLEQPAYAGLPIAD--ALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNL 65 I D D E A L +L+RAQ+ + + ++VK R+ Sbjct: 39 IADGDLRESAAYDEARMQQSENEARILELEDQLERAQIIEEDA--SGGAGLGAKVKVRDE 96 Query: 66 SDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 G R LV ++ ++S +P+G AL G R G + +LP G A EVLE+ Sbjct: 97 K-GNERQFELVGTYEVDVLKGKISDASPIGQALSGKRPGQIVTVQLPKGSA-KFEVLEVT 154 Query: 126 YQ 127 Y Sbjct: 155 YD 156 >UniRef50_A5FHJ3 GreA/GreB family elongation factor n=3 Tax=Flavobacteriaceae RepID=A5FHJ3_FLAJ1 Length = 143 Score = 95.2 bits (236), Expect = 5e-19, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 64/125 (51%), Gaps = 2/125 (1%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 MS+ II+ + I + + + L +EL A + +P DVV++N +V Sbjct: 18 MSQNNIILTTGTYDLIKDHVRRKKVT-PQEEELLLSELKHATQVLRKNLPEDVVSVNRKV 76 Query: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE 120 +++ + + + LV P K+ S ++SV++ G A++G +VGD I W G LE Sbjct: 77 TYKDHNTNQEKTILLVGPEKVKVSKNKISVLSDEGIAMVGYKVGDLIEWPAKKGH-LKLE 135 Query: 121 VLELE 125 +L++E Sbjct: 136 ILKVE 140 >UniRef50_Q11G80 GreA/GreB family elongation factor n=1 Tax=Chelativorans sp. BNC1 RepID=Q11G80_MESSB Length = 176 Score = 95.2 bits (236), Expect = 6e-19, Method: Composition-based stats. Identities = 35/129 (27%), Positives = 54/129 (41%), Gaps = 1/129 (0%) Query: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKF 62 + + D E + + E+ + L +L+ A++ PE P DVVT+NSR+ F Sbjct: 4 KRGCTLTTRDFETLQQMFEEHRDRNEAMTMLLRHKLETARVTRPEVTPDDVVTLNSRISF 63 Query: 63 RNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVL 122 R + +G R + L + G ALLGL G + L+V Sbjct: 64 R-VGNGMPETRIICRDRSRGPLGYFLPITTIRGLALLGLTEGQMTPVSRGRSLVEILQVT 122 Query: 123 ELEYQPEAA 131 + YQPE A Sbjct: 123 AIHYQPERA 131 >UniRef50_A6H247 Transcription elongation factor greA n=33 Tax=Bacteroidetes RepID=GREA_FLAPJ Length = 158 Score = 95.2 bits (236), Expect = 6e-19, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 51/135 (37%), Gaps = 9/135 (6%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADAL--------NAELDRAQMCSPEEMPHD 52 + RP + +A L E Y A L A++ ++ Sbjct: 25 IERPKASADIAEARDKGDLSENAEYDAAKEAQGLLELKIKKMEEVYSNARLIDESQLDVS 84 Query: 53 VVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELP 112 + S VK +N S+G LV ++ ++SV +P+G LLG VG+ +P Sbjct: 85 KALVLSHVKIKNQSNGMEMSYHLVAESEADLKTGKISVTSPIGKGLLGKSVGEIAEITVP 144 Query: 113 GGVATHLEVLELEYQ 127 G EVLE+ Sbjct: 145 NG-ILKFEVLEITRD 158 >UniRef50_Q1CX76 Transcription elongation factor, GreA/GreB family n=2 Tax=Cystobacterineae RepID=Q1CX76_MYXXD Length = 167 Score = 94.8 bits (235), Expect = 7e-19, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 2/95 (2%) Query: 32 DALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVM 91 L A L+ ++ P+ V + V+ + G +V P + +LSV Sbjct: 72 QELAAVLEDVRVVEPDASQAGRVFFGAWVELEDEDGG-PVRYRIVGPDESDVKAGRLSVE 130 Query: 92 APVGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 +P+ ALLG VG+S+ + P G V ++Y Sbjct: 131 SPLARALLGKEVGESVVVDRPRG-PVEYTVTAVDY 164 >UniRef50_A6NPJ1 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NPJ1_9BACE Length = 197 Score = 94.8 bits (235), Expect = 7e-19, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 52/131 (39%), Gaps = 9/131 (6%) Query: 3 RPTIIINDLDAERIDILLEQPAY--------AGLPIADALNAELDRAQMCSPEEMPHDVV 54 RP ++ +A L E Y L + A + S + P D V Sbjct: 55 RPQLLEAVKEARGFGDLSENFEYKAAKQEKNRNESRIRFLENMIRTAVVISDQAAP-DTV 113 Query: 55 TMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGG 114 + +V D E +V + + ++S +PVG+ALLG RVGD I+ ++ Sbjct: 114 GLYDKVTVYLEEDDETETYQVVTTMRQDALHGRISKESPVGSALLGKRVGDRIYIQVNDN 173 Query: 115 VATHLEVLELE 125 ++ + +E Sbjct: 174 YGYYVVIKAIE 184 >UniRef50_Q4A759 Transcription elongation factor greA n=4 Tax=Mycoplasma RepID=GREA_MYCH7 Length = 160 Score = 94.8 bits (235), Expect = 8e-19, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 52/132 (39%), Gaps = 11/132 (8%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPI--------ADALNAELDRAQMCSPEEMPHD 52 + R +I DA L E Y L + +A++ ++ Sbjct: 29 VERVNVIQEIKDARSQGDLSENAEYDVAREKQGIIESRIRELETIISKAKIIK-ADLGSS 87 Query: 53 VVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELP 112 V++ S+V N+ GE++ +V +++S +P+ ALLG GD + ++ Sbjct: 88 RVSIGSKVSLENVESGEIQTFQIVSSIDADPFKSKISNFSPIAQALLGQHQGDEVEVDV- 146 Query: 113 GGVATHLEVLEL 124 + +LE+ Sbjct: 147 -NEKYSVRILEV 157 >UniRef50_Q5SKM1 Transcription elongation factor n=5 Tax=Thermus RepID=Q5SKM1_THET8 Length = 155 Score = 94.8 bits (235), Expect = 8e-19, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 4/106 (3%) Query: 20 LEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPA 79 + + L L RA + D V + +V+ GE +V Sbjct: 52 ARRAMWQNEARIAQLEDLLSRAVIVENGSF--DQVALGCQVELE-TETGERLSLAIVGSH 108 Query: 80 KMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 + + ++S +P+G ALLG +VGD + G +LE++ Sbjct: 109 EADIFSGKISDESPLGQALLGKKVGDVVEIRGKKGAQV-YTILEIK 153 >UniRef50_O51157 Transcription elongation factor greA n=23 Tax=Borrelia RepID=GREA_BORBU Length = 901 Score = 94.4 bits (234), Expect = 8e-19, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 48/124 (38%), Gaps = 10/124 (8%) Query: 13 AERIDILLEQPAYAGLPIADA--------LNAELDRAQMCSPEEMPHDVVTMNSRVKFRN 64 A + L E Y L E++ A++ +++ VV ++V N Sbjct: 777 ARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIENAKVIDTKDLQSSVVGFGTKVVILN 836 Query: 65 LSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHL--EVL 122 G+ ++ P + +S +P G LL R GDS+++ + + ++ Sbjct: 837 EVTGKDESYLILGPWESNPDEGIISYKSPFGENLLDSREGDSLNFVINNTNFKYFVKKIE 896 Query: 123 ELEY 126 +++ Sbjct: 897 PIKF 900 >UniRef50_B1ZD84 GreA/GreB family elongation factor n=4 Tax=Methylobacterium RepID=B1ZD84_METPB Length = 149 Score = 94.4 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 1/124 (0%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 RP I + D +R+ G P AD L ++L+RA + P DVV + RV+ Sbjct: 6 KRPPITLPTYDFDRLVASGLAAYQRGDPYADLLLSKLERAASFAASPPPRDVVAVTCRVR 65 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWE-LPGGVATHLE 120 +R + VR LVYP + S ++S + +G A+LGLR GD I + G +E Sbjct: 66 YRLDDEPTVRAHRLVYPGHVIASEEEISAASALGVAMLGLRRGDRIPFRDNATGSEHVVE 125 Query: 121 VLEL 124 + ++ Sbjct: 126 IADV 129 >UniRef50_Q12SN9 Transcription elongation factor GreB n=17 Tax=Bacteria RepID=Q12SN9_SHEDO Length = 166 Score = 94.1 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 45/134 (33%), Gaps = 11/134 (8%) Query: 3 RPTIIINDLDAERIDILLEQPAYAGLPI--------ADALNAELDRAQMCSPEEMPHDVV 54 RP I A + E Y L ++ ++ V Sbjct: 32 RPEITKKVAWAASLGDRSENADYKENKRLLRQIDGRVRFLRKRIEALKVVPYAAEQEGKV 91 Query: 55 TMNSRVKFRNLSDGEVRVRTLVYPAKM-TDSNTQLSVMAPVGAALLGLRVGDSIHWELPG 113 + V+ N +G + +V P ++ D+ +S+ +P+ ALL V D P Sbjct: 92 FFGAWVEIEN-DEGVKKRFRIVGPDEIYGDAKGYISIDSPMARALLKKEVDDDASVLTPT 150 Query: 114 GVATHLEVLELEYQ 127 G + ++ YQ Sbjct: 151 GEQFWY-INKIFYQ 163 >UniRef50_A5IYH4 Transcription elongation factor greA n=3 Tax=Mycoplasma RepID=GREA_MYCAP Length = 163 Score = 94.1 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 55/135 (40%), Gaps = 11/135 (8%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIAD--------ALNAELDRAQMCSPEEMPHD 52 + RP + + +A L E Y L L+ A++ + + Sbjct: 29 VERPAVQASLKEARAQGDLSENAEYDAARDRQSEVERRILELERILENAEIIDTKSAVQN 88 Query: 53 VVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLR-VGDSIHWEL 111 + + V++ N+ + V T++ P ++S +PV A++ +GD + E+ Sbjct: 89 KAGIGATVRYLNMKTNKELVVTIMGPHDSNPIENKISNESPVAQAIMEANGIGDVVEVEV 148 Query: 112 PGGVATHLEVLELEY 126 P +++VL++ Y Sbjct: 149 P--QKYNIKVLDISY 161 >UniRef50_B1H062 Transcription elongation factor n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1H062_UNCTG Length = 158 Score = 93.7 bits (232), Expect = 1e-18, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 47/109 (43%), Gaps = 3/109 (2%) Query: 20 LEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPA 79 ++ + L +++ A++ + + D V + V ++ G +V Sbjct: 50 AKETLANLIRRIMELTSKIACAKIIEEQNIDSDKVFIGVTVTIKD-EYGADYQYAIVDLE 108 Query: 80 KMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLEL-EYQ 127 + ++S+ +P+ LLG G+++ ELP G ++L++ YQ Sbjct: 109 EADPVANRISIQSPLAQGLLGHTAGETVAVELPAGKT-KFKILKISRYQ 156 >UniRef50_D2RL35 GreA/GreB family elongation factor n=3 Tax=Veillonellaceae RepID=D2RL35_ACIFE Length = 172 Score = 93.7 bits (232), Expect = 1e-18, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 49/130 (37%), Gaps = 5/130 (3%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPIADAL--NAELDRAQMCSPEEMPHDVVTMNSR 59 R + I+ D + L + AQ+ ++ +VV++ + Sbjct: 32 ERLKVAISYGDISENSEYDDAKNEQAFVEGRILTLENMIRNAQIIKDTDITKNVVSLGCK 91 Query: 60 VKFRNLSDGEVRVRTLVYPAKMTDSNT--QLSVMAPVGAALLGLRVGDSIHWELPGGVAT 117 VK ++ + T+V + ++S +PVG A+LG +VG + P G Sbjct: 92 VKIEDMETHDQEEYTVVGTTEADPMAEPPRISNESPVGKAILGQKVGAVVKVTTPIGE-L 150 Query: 118 HLEVLELEYQ 127 +++ + Sbjct: 151 DYKIVAVSRP 160 >UniRef50_A0M1N1 GreA-like transcription elongation factor n=3 Tax=Flavobacteriaceae RepID=A0M1N1_GRAFK Length = 166 Score = 93.7 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 58/125 (46%), Gaps = 7/125 (5%) Query: 8 INDLDAERIDILLEQPAYAGLPI------ADALNAELDRAQMCSPEEMPHDVVTMNSRVK 61 + DL+ ER + E + L+ L A++ ++ P D + +RVK Sbjct: 43 LKDLEYERAHVEAENDTEKRRAQSLIDGKINLLSERLQTARLLDSKDQPKDEIRFGARVK 102 Query: 62 FRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEV 121 N + G+++ +V + +++ +AP+ A+ G +VG+ I ++L G L+V Sbjct: 103 LTNETSGQLQEFQIVGVDEADIKKKKIAFVAPIAKAVTGRKVGEEIDFKL-GNEIRKLKV 161 Query: 122 LELEY 126 L + Y Sbjct: 162 LGITY 166 >UniRef50_B9KZF4 Transcription elongation factor greA n=2 Tax=Thermomicrobia (class) RepID=B9KZF4_THERP Length = 156 Score = 93.3 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 3/98 (3%) Query: 28 LPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQ 87 + L RAQM P D V + SRV + G V +V P + + + Sbjct: 62 EARIREIEHILRRAQMI-TRAGPQDEVRLGSRVTVIDEE-GSVETWVIVSPEEANAAQGR 119 Query: 88 LSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 +S+ +PVGAALLG RVG ++ PGG + +E Sbjct: 120 ISIESPVGAALLGKRVGTTVTVRAPGGE-MRFTIQRIE 156 >UniRef50_A5VME9 Transcription elongation factor GreA n=49 Tax=Lactobacillaceae RepID=A5VME9_LACRD Length = 165 Score = 93.3 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 51/131 (38%), Gaps = 11/131 (8%) Query: 3 RPTIIINDLDAERIDILLEQPAY--------AGLPIADALNAELDRAQMCSPEEMPHDVV 54 RP I A + L E Y LN +L A++ +P+ + Sbjct: 37 RPAKIEQLKAARALGDLSENTEYSTAKRELRHLESRLRYLNKQLQYAEIVTPKN--DHTI 94 Query: 55 TMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGG 114 + + V D E +V + + ++S +P+G A+L G ++ E P Sbjct: 95 DLGTTVTIEFEDDHEQETYHIVGKQEADLAKQKISFDSPLGQAILHQTAGTTVTVEAPQ- 153 Query: 115 VATHLEVLELE 125 + ++++++E Sbjct: 154 SSYKVKIVKVE 164 >UniRef50_A2SJD8 Transcription elongation factor n=50 Tax=Proteobacteria RepID=A2SJD8_METPP Length = 213 Score = 93.3 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 53/139 (38%), Gaps = 11/139 (7%) Query: 2 SRPTIIINDLDAERIDILLEQPAY--------AGLPIADALNAELDRAQMCSPEEMPH-D 52 RP ++ A + E Y L L+ A++ P D Sbjct: 77 ERPKVVETVSWAAKNGDRSENGDYLYGKKRLREIDRRIRFLTKRLEIAEVADPSVHRGSD 136 Query: 53 VVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELP 112 V + V + DG R T+ + + ++S ++PV ALL RVGD + P Sbjct: 137 QVFFGATVTYA-APDGVERTITIKGIDEADNLQAEVSWISPVARALLKARVGDEVTLLTP 195 Query: 113 GGVATHLEVLELEYQPEAA 131 G +EV+E+ Y P A Sbjct: 196 QG-PQTIEVIEVRYPPRPA 213 >UniRef50_C5BN87 Transcription elongation factor GreB n=5 Tax=Proteobacteria RepID=C5BN87_TERTT Length = 172 Score = 93.3 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 46/133 (34%), Gaps = 10/133 (7%) Query: 2 SRPTIIINDLDAERIDILLEQPAY--------AGLPIADALNAELDRAQMCSPEEMPHDV 53 RP + A + E Y L +D ++ + Sbjct: 41 ERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLRKRIDSLKVVRYAKEQEGS 100 Query: 54 VTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPG 113 V S VK N GE + +V ++ +S+ +P+ ALL +VGD + Sbjct: 101 VYFGSWVKIEN-EAGENKELRIVGYDEIFGEKNYISIDSPMAKALLRKKVGDEAIVKTEV 159 Query: 114 GVATHLEVLELEY 126 G E++E+ Y Sbjct: 160 GEFC-WEIMEISY 171 >UniRef50_Q2S2N3 Transcription elongation factor n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S2N3_SALRD Length = 164 Score = 92.9 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 49/133 (36%), Gaps = 9/133 (6%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPI--------ADALNAELDRAQMCSPEEMPHDV 53 R I +A L E Y + + RA++ + Sbjct: 33 ERSRIADEIAEARAKGDLSENAEYDAAKEEQGKLEARIKQIEDTIARARIVDESTVDDSK 92 Query: 54 VTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPG 113 + S V NL G+ + TLV + S ++SV +P+G LL GD + ++P Sbjct: 93 AYILSDVTVENLDTGDEQTFTLVSEEEANISENKISVDSPIGEGLLAQEEGDEVSIDVPA 152 Query: 114 GVATHLEVLELEY 126 G H ++ ++ Sbjct: 153 GT-VHFKIKDISR 164 >UniRef50_A2RGA4 Transcription elongation factor greA n=111 Tax=Firmicutes RepID=GREA_STRPG Length = 160 Score = 92.9 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 9/133 (6%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIADA--------LNAELDRAQMCSPEEMPHD 52 + RP I+ A L E Y A L ++ A++ + + D Sbjct: 26 VRRPEIVERIKIARSYGDLSENSEYDAAKDEQAFVEGQISTLETKIRYAEIIDSDAVAKD 85 Query: 53 VVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELP 112 V + V + + + +V A + ++S +P+ AL+G + GD + E P Sbjct: 86 EVAIGKTVIVQEVGTTDKDTYHIVGAAGADIFSGKISNESPIAQALIGKKTGDKVRIESP 145 Query: 113 GGVATHLEVLELE 125 +E++ +E Sbjct: 146 A-ATYDVEIISVE 157 >UniRef50_B1AIU2 Transcription elongation factor greA n=28 Tax=Ureaplasma RepID=GREA_UREP2 Length = 156 Score = 92.9 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 45/132 (34%), Gaps = 9/132 (6%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIA--------DALNAELDRAQMCSPEEMPHD 52 + P I DA L E Y D + L+ ++ D Sbjct: 24 VKWPAITKQLQDAREQGDLSENADYDAAKNEQAALKKRKDEIEEILENYELIEDVLRSTD 83 Query: 53 VVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELP 112 V++ S ++ N V TLV ++S+ P+G AL+ + G + Sbjct: 84 EVSIGSTIEIYNYQKDCEEVITLVGSMDSDPFANKISIDTPLGKALVKQKKGTEVTVHTL 143 Query: 113 GGVATHLEVLEL 124 ++++++ Sbjct: 144 A-SPYKVKIIKI 154 >UniRef50_Q13CU9 Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris BisB5 RepID=Q13CU9_RHOPS Length = 156 Score = 92.5 bits (229), Expect = 3e-18, Method: Composition-based stats. Identities = 42/127 (33%), Positives = 60/127 (47%), Gaps = 2/127 (1%) Query: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKF 62 P + I D R+ + Q + P+ L +EL+RA + P V ++ V F Sbjct: 2 NPPVSIASRDFGRLRQIAVQALASRDPVGRFLFSELERAVVID-SPAPPLTVRLDDWVTF 60 Query: 63 RNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVL 122 R D + R LV P + LSV++PVGAAL+GLR G +H++ GV V Sbjct: 61 RADDDQPLESRILVLPGHYRRNALHLSVLSPVGAALVGLRPGARMHYQGVDGVQHVATVE 120 Query: 123 ELEYQPE 129 LE PE Sbjct: 121 SLE-PPE 126 >UniRef50_B5ZLJ0 Transcription elongation factor GreB n=5 Tax=Proteobacteria RepID=B5ZLJ0_GLUDA Length = 180 Score = 92.5 bits (229), Expect = 3e-18, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 3/111 (2%) Query: 22 QPAYAGLPIADALNAELDRAQMCSPE-EMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAK 80 + L +++A + P + D V + V + D R +V + Sbjct: 70 KRLREIDRRVRFLTRRIEKAIVVDPAAQTRRDRVFFGATVTYVTEDD-TERTVVIVGVDE 128 Query: 81 MTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEYQPEAA 131 + Q+S+ +PV ALLG RVGD + P G +E+L + Y A Sbjct: 129 SDLAAGQVSLASPVARALLGGRVGDEVRLLTPAGAEM-IEILRIAYPAPAE 178 >UniRef50_Q9JVD0 Transcription elongation factor greB n=64 Tax=Bacteria RepID=GREB_NEIMA Length = 163 Score = 92.5 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 48/134 (35%), Gaps = 11/134 (8%) Query: 2 SRPTIIINDLDAERIDILLEQPAY--------AGLPIADALNAELDRAQMCSPE-EMPHD 52 RP I+ A E Y L L+ A + PE D Sbjct: 28 ERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRIRFLTKRLEAAVVVDPELREATD 87 Query: 53 VVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELP 112 V + V DG + +V ++ + ++S ++P+ L+ R GD + P Sbjct: 88 QVFFGATVGLL-RGDGREQTVKIVGIDEIDTAQNKISWISPLARCLIKAREGDEVVLNTP 146 Query: 113 GGVATHLEVLELEY 126 G +E+L +EY Sbjct: 147 EGRE-EIEILSVEY 159 >UniRef50_Q2N9J5 Transcription elongation factor n=2 Tax=Erythrobacter RepID=Q2N9J5_ERYLH Length = 159 Score = 92.5 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 40/107 (37%), Gaps = 3/107 (2%) Query: 21 EQPAYAGLPIADALNAELDRAQMCSPEEMPH-DVVTMNSRVKFRNLSDGEVRVRTLVYPA 79 + L + A++ P E P D + + + D + TLV Sbjct: 54 RKRMREIDRELAHLARRMKHARVIEPSEQPDKDRAFFGATLTLADEDD-ARKTVTLVGDD 112 Query: 80 KMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 + S ++ +P+ AL G RVGD LP G EV+ + Y Sbjct: 113 EQDASAGKIGWSSPLARALRGARVGDLRTVHLPSGE-REWEVMAIAY 158 >UniRef50_C5BTE2 Transcription elongation factor GreA n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BTE2_TERTT Length = 126 Score = 92.5 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 37/108 (34%) Query: 17 DILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLV 76 L + A L L A + +++ V S V ++ + E + +V Sbjct: 15 RELEANLSSLPDTDAAELRTRLASATVVDNDDIMGGRVQFGSLVTVFSIDEEEEQSFQIV 74 Query: 77 YPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 + L +P+ AL G R G+ + L G EV + Sbjct: 75 SSDESLSGRGLLDQRSPLAQALFGAREGEVVRVLLQNGSNCDYEVTHI 122 >UniRef50_Q4K5S3 Transcription elongation factor GreB n=3 Tax=Pseudomonas RepID=Q4K5S3_PSEF5 Length = 197 Score = 91.7 bits (227), Expect = 6e-18, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 3/109 (2%) Query: 17 DILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLV 76 D +Q L AQ+ + D V + SRV F + D + LV Sbjct: 90 DDADKQRMAELERDLRYFTQRLHSAQVVTTAN-STDKVQIGSRVTFADEQD-RQQSVQLV 147 Query: 77 YPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 + + ++ +P+G ALLG + GD + W+ P G +E++ +E Sbjct: 148 GEDQADAAKGLINWASPLGRALLGAQPGDEVLWQRPAGNQL-IEIIRIE 195 >UniRef50_A9BFC0 Transcription elongation factor greA n=12 Tax=Thermotogaceae RepID=GREA_PETMO Length = 159 Score = 91.7 bits (227), Expect = 6e-18, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 52/123 (42%), Gaps = 9/123 (7%) Query: 12 DAERIDILLEQPAYAGLPI--------ADALNAELDRAQMCSPE-EMPHDVVTMNSRVKF 62 +A + L E Y ++ LD A++ + V++ +VK Sbjct: 37 EARELGDLSENSEYEEAKNEQGMIDSRIKEIDYILDNAEIIENGGNHDNSTVSLGKKVKI 96 Query: 63 RNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVL 122 ++ + LV P + ++S+ +P+G +LLG + G+ I+ + G + +E+ Sbjct: 97 KDYRLNREQEFVLVTPQEANIEENKISIESPIGRSLLGRKKGEVINIKTARGSSKKIEIK 156 Query: 123 ELE 125 E+ Sbjct: 157 EIS 159 >UniRef50_B2S1W7 Transcription elongation factor greA n=6 Tax=Treponema RepID=GREA_TREPS Length = 162 Score = 91.7 bits (227), Expect = 6e-18, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 9/119 (7%) Query: 15 RIDILLEQPAYAGLPIAD--------ALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLS 66 + L E Y L E++RAQ+ P + V+ + + +N + Sbjct: 41 ELGDLRENAEYKAAREEQTRLNNMVTRLQEEIERAQVFDPTTVVAGRVSFGTVISLKNHT 100 Query: 67 DGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 GE T++ P + +S M+P+G+ LL + G+ + + + G E+L + Sbjct: 101 SGEDETYTILGPWESAPERGIISYMSPLGSNLLNRKTGEQLAFTV-GEHEKVYEILSIS 158 >UniRef50_B4UMG4 GreA/GreB family elongation factor n=4 Tax=Anaeromyxobacter RepID=B4UMG4_ANASK Length = 169 Score = 91.4 bits (226), Expect = 7e-18, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 43/116 (37%), Gaps = 3/116 (2%) Query: 12 DAERIDILLEQPAYAG-LPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEV 70 DA R+ AL+A L + PE P V + V DG Sbjct: 52 DAARLPDAERPARLGELDARIAALDATLGALTVLGPEATPEGQVGFGTWVTVE-EEDGRR 110 Query: 71 RVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 LV P + +S +PV ALLG R GD + PGG A L V+ + Sbjct: 111 VTWRLVGPDEADARRGLISAGSPVARALLGRRAGDVVEVNRPGGEA-ELTVVAVRR 165 >UniRef50_B4D5K0 GreA/GreB family elongation factor n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D5K0_9BACT Length = 169 Score = 91.4 bits (226), Expect = 9e-18, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 44/111 (39%), Gaps = 2/111 (1%) Query: 17 DILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLV 76 + AL+ L A++ + E D V V R+ + G +V Sbjct: 60 GEISRDELRRVTSRMQALSQRLADAEVIAISESRGDEVRFGMFVTIRD-AGGVEDEYRIV 118 Query: 77 YPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEYQ 127 ++ +S ++P+ A++G ++GD + ++ P G L ++ + Sbjct: 119 GVDEVDLEAGWISWLSPLAQAIVGRKIGDVVQFQAPAGE-KKLHIVAVRPP 168 >UniRef50_B2V1C0 Transcription elongation factor n=28 Tax=Clostridium RepID=B2V1C0_CLOBA Length = 155 Score = 91.4 bits (226), Expect = 9e-18, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 54/134 (40%), Gaps = 9/134 (6%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAG--------LPIADALNAELDRAQMCSPEEMPHD 52 + R I L A E Y L + A + E+ Sbjct: 23 VKRAEIAKEKLVAAAHGDRSENAEYKEACANYRENDNRIQYLMTMISTATVIDDTEIDKS 82 Query: 53 VVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELP 112 + +NS+ + + + D + V TLV + N +S+ + +G AL+G + G+++ E P Sbjct: 83 SLGINSKARIKFVEDDDEDVITLVTTMDLDPENMLISIESDLGKALMGKKAGETVEVEAP 142 Query: 113 GGVATHLEVLELEY 126 G +++LE+ Y Sbjct: 143 -GAKYTVKILEILY 155 >UniRef50_D2QK34 GreA/GreB family elongation factor n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QK34_9SPHI Length = 171 Score = 91.0 bits (225), Expect = 9e-18, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 2/98 (2%) Query: 30 IADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGE-VRVRTLVYPAKMTDSNTQL 88 ALN + A++ + ++ P D V + V + S G+ + T+V + + ++ Sbjct: 73 QIAALNQRIATAKVVNMQDHPLDEVRFGATVTLSSQSTGKADQQLTIVGVDEADAIHGRI 132 Query: 89 SVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 + AP+ LLG +VGD I P G LE+ + Y Sbjct: 133 AFPAPIARLLLGKKVGDFITLRTPRGENA-LEITSIYY 169 >UniRef50_Q04UP0 Transcription elongation factor n=6 Tax=Leptospira RepID=Q04UP0_LEPBJ Length = 927 Score = 91.0 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 9/121 (7%) Query: 12 DAERIDILLEQPAYAGL--------PIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFR 63 +A+ L E Y L AE+ A + + D + + K + Sbjct: 798 EAQERGDLRENAEYKAAMERQVQLQAAIKRLEAEIKSAIILDLTNVKTDKINIGVTAKLK 857 Query: 64 NLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLE 123 N S GEV +++ +S +P+ +LLG +VGD+ L G T VLE Sbjct: 858 NESTGEVVAYSILGAWDADTEKHIISYQSPLAKSLLGKKVGDAAVLNL-TGAETRYTVLE 916 Query: 124 L 124 + Sbjct: 917 I 917 >UniRef50_B5Y9H5 Transcription elongation factor n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y9H5_COPPD Length = 163 Score = 91.0 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 56/133 (42%), Gaps = 9/133 (6%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIAD-ALNAELDR-------AQMCSPEEMPHD 52 + R + +A + L E + L + R A++ E++ D Sbjct: 28 VKRKEVAEKIQEARALGDLSENSEFEAAKEEQALLEERIARLETLVYNARVVKAEDLALD 87 Query: 53 VVTMNSRVKFRNLSDGEVRVRTLVY-PAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWEL 111 V++ ++V + S G +V ++ + ++S +P+G+ LLG + GD + +L Sbjct: 88 QVSVGTKVLVLDESAGREESFIIVGNSEEVDPFSGKISSKSPLGSRLLGRKRGDRVEIKL 147 Query: 112 PGGVATHLEVLEL 124 G E+L++ Sbjct: 148 RNGSKAVYEILDI 160 >UniRef50_C7T958 Transcription elongation factor n=4 Tax=Lactobacillus rhamnosus RepID=C7T958_LACRG Length = 165 Score = 91.0 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 54/138 (39%), Gaps = 13/138 (9%) Query: 3 RPTIIINDLDAERIDILLEQPAYAGL-PIADALNAELDR-------AQMCSPEEMPHDVV 54 RP I N +A + E Y+ L L A++ +P ++ Sbjct: 26 RPAKIKNLAEAAALGDRSENAEYSAAKRELRQLEGRLRYLDKLIRYAKVTTPAA--ANLA 83 Query: 55 TMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGG 114 + + V D + LV PA+ +L++ +P+GAA+ VGD++ P G Sbjct: 84 DIGNWVTLEFDDDQDEDTYELVGPAEAGMGAAKLAINSPLGAAVRRHHVGDTVTVTAPSG 143 Query: 115 VATHLEVLELEYQPEAAG 132 + V+ + P A G Sbjct: 144 TYQ-VTVMAIS--PHAPG 158 >UniRef50_A6NZ08 Transcription elongation factor n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NZ08_9BACE Length = 157 Score = 91.0 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 1/106 (0%) Query: 20 LEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPA 79 + + L+ + E V + S++K ++ E +V Sbjct: 52 AKNEQGKLYSRIAEVENILENCVVIEEEIHDGKTVRLGSKLKVLDVEFNEELDYEVVGSQ 111 Query: 80 KMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 + N ++S +P G ALLG VG+ + E P G H +VL + Sbjct: 112 EADPMNGRISEDSPFGRALLGKSVGEDVVVEAPAGA-LHYKVLSIS 156 >UniRef50_C8W826 Transcription elongation factor n=7 Tax=Coriobacteriaceae RepID=C8W826_ATOPD Length = 159 Score = 91.0 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 43/118 (36%), Gaps = 7/118 (5%) Query: 9 NDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDG 68 ++ DA + + + + L A++ V + + V+ + G Sbjct: 49 SEYDAAKEEQ------SHNESRINEIRQILSVAKVVEGGSKRKVTVAIGTTVELADAK-G 101 Query: 69 EVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 + +V + ++S +P G AL+G + GD + + P G ++ + Sbjct: 102 KTTKYVIVGTTETNSLEHKISNESPAGEALIGHKKGDEVEFTTPNGKVKKYTIISITR 159 >UniRef50_B7CAB2 Transcription elongation factor n=5 Tax=Erysipelotrichaceae RepID=B7CAB2_9FIRM Length = 162 Score = 91.0 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 52/136 (38%), Gaps = 14/136 (10%) Query: 3 RPTIIINDLDAERIDILLEQPAYAGLPI--------ADALNAELDRAQMCSPE-----EM 49 R +I+ +A L E Y L A + A++ + + Sbjct: 28 RQEVIVELQEARAQGDLSENADYDAAREHQAQVEGRIRELEAMIKNAEIITESADVEDKK 87 Query: 50 PHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHW 109 +VV + S VK +LSD + +V + N +LS P+ ++ +VGD Sbjct: 88 KKNVVKLGSTVKILDLSDNQEVTFNIVGTIEADPFNGKLSNTTPLAEVIMDHKVGDVCTV 147 Query: 110 ELPGGVATHLEVLELE 125 + +++LE++ Sbjct: 148 K-RVEEPYDVKILEIK 162 >UniRef50_Q848L1 GreA n=1 Tax=uncultured bacterium RepID=Q848L1_9BACT Length = 597 Score = 90.6 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 46/123 (37%), Gaps = 11/123 (8%) Query: 14 ERIDILLEQPAYAGLPIADA--LNAELDR-------AQMCSPEEMPHDVVTMNSRVKFRN 64 +R D LL P ++ L EL + A + P D V + V + Sbjct: 477 QRRDELLASPDDDLPERSELATLERELAQVSAVLQGAIVIRLASPPRDEVRFGAEVVVED 536 Query: 65 LSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 G LV + ++ +P+G AL G R+G + W P G ++ V E+ Sbjct: 537 -DRGSRSRFQLVGENEAAPERGLVNWFSPLGRALAGARLGQRVEWTTPAGRGAYV-VREI 594 Query: 125 EYQ 127 Y Sbjct: 595 SYP 597 >UniRef50_B0VIH5 Putative transcription elongation factor n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VIH5_9BACT Length = 159 Score = 90.6 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 13/136 (9%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPI--------ADALNAELDRAQMCSPEEMPHDV 53 RP +I A L E Y D L ++ E P D+ Sbjct: 25 ERPEVIKAVAIAREFGDLSENAEYKAARERQRAIDNEIDYLRRRSANLKVIDTSEFPKDM 84 Query: 54 VTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSN----TQLSVMAPVGAALLGLRVGDSIHW 109 V + +++ E LV P ++ N ++S+++P+G ALL ++G+ Sbjct: 85 VRFGTYCVAEDINTKECICYHLVGPEELNYYNEEGIQEVSIVSPIGKALLSKKIGEIAIV 144 Query: 110 ELPGGVATHLEVLELE 125 + P G L++ E++ Sbjct: 145 KAPIGE-RKLKIREIK 159 >UniRef50_A0LES5 GreA/GreB family elongation factor n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LES5_SYNFM Length = 155 Score = 90.6 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 1/106 (0%) Query: 19 LLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYP 78 L + L +L ++ + + V +N+ GE + LV P Sbjct: 49 LARERHMVLQKKIQDLERKLASCEIVVGRKFFFKQAEFGTIVVIQNIETGETQRYQLVGP 108 Query: 79 AKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 + + +LS+ +PVG L+G R G+ + P G V+ + Sbjct: 109 YESNVVDGKLSIDSPVGRHLVGRREGEEVLVYTPAG-VRMYRVVSI 153 >UniRef50_Q0B0N4 Transcription elongation factor greA n=6 Tax=Clostridia RepID=GREA_SYNWW Length = 159 Score = 90.6 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 51/106 (48%), Gaps = 1/106 (0%) Query: 20 LEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPA 79 + +L L +A++ E++ DVV++ SR+ + + G TLV Sbjct: 54 AKNEQAFIEGRIISLEKTLKKARLMEDEDIRTDVVSLGSRITLKEMKSGREVTVTLVSSV 113 Query: 80 KMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 + + ++S +PVG A++G +V ++ E P G +++++E Sbjct: 114 ESKLKDGKISDESPVGKAIMGKKVKSTVSVEAPAGTI-KYKIIKVE 158 >UniRef50_B0P8A6 Transcription elongation factor n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P8A6_9FIRM Length = 151 Score = 90.2 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 53/116 (45%), Gaps = 7/116 (6%) Query: 9 NDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDG 68 ++ D + + + + L +L ++ +++ DVV++ SRVK ++ Sbjct: 41 SEYDEAKNEQAVVEAR------IKKLEDQLKHVKIIERDQISTDVVSVGSRVKILDMDYD 94 Query: 69 EVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 E V T+ + + +S +PVG L+G +VGD + P L++LE+ Sbjct: 95 EEMVYTIASSVESHNDLESISDESPVGKGLIGHKVGDVVEIHAPA-AVLKLKILEI 149 >UniRef50_B9L0L0 Transcription elongation factor greA n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=GREA_THERP Length = 156 Score = 90.2 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 53/133 (39%), Gaps = 12/133 (9%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLP--------IADALNAELDRAQMCS-PEEMPHD 52 RP I +A + E AY + L R ++ P + Sbjct: 27 RRPEIARVIQEAREHGDIRENAAYDAAKHDQAFIEGRIREIEELLKRVELIEQPTDGDRS 86 Query: 53 VVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELP 112 VV + S V DGE+ T+V + S ++S +PVG ALLG R G+ + E P Sbjct: 87 VVRVGSTVTIEI--DGEIETYTIVGAIEAKPSAGRISNESPVGRALLGHRAGEIVPIETP 144 Query: 113 GGVATHLEVLELE 125 G ++E++ Sbjct: 145 NGTLM-ARIIEVQ 156 >UniRef50_B3DVF3 Transcription elongation factor GreA fused to uncharacterized associated domain n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DVF3_METI4 Length = 614 Score = 89.8 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 45/135 (33%), Gaps = 11/135 (8%) Query: 3 RPTIIINDLDAERID---ILLEQPAYAGLPIAD--------ALNAELDRAQMCSPEEMPH 51 R I N D L E Y L + + RA+ + Sbjct: 472 RKKIPENSKDIAHARSYGDLRENHEYKAAKEMQVVLMRRKAELESMISRARATDFSNVDT 531 Query: 52 DVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWEL 111 V + + V + +L ++ S +S +A G +LLG + GD + L Sbjct: 532 TTVNIGTVVSYTDLKTNRTNSVAILGAWDSNPSKGIISYLAAFGQSLLGHKTGDVLQVSL 591 Query: 112 PGGVATHLEVLELEY 126 G+ T + + ++ Sbjct: 592 EDGITTEIRIDKISR 606 >UniRef50_D1C6T4 Transcription elongation factor n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C6T4_SPHTD Length = 157 Score = 89.4 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 4/109 (3%) Query: 18 ILLEQPAYAGLPIADALNAELDRAQMCSPEEM-PHDVVTMNSRVKFRNLSDGEVRVRTLV 76 + + L RA++ VV + S V DG T+V Sbjct: 51 DAAKHDQAFIEGRIREIEDILRRAEVIDEAPNGDARVVRLGSTVTIEI--DGAQETYTIV 108 Query: 77 YPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 + + ++S +P G ALLG R G+ + + P H ++ +E Sbjct: 109 GAVEAKPAAGRISNESPFGRALLGHREGEEVEIQTPA-AVLHARIVNVE 156 >UniRef50_D1CDC6 Transcription elongation factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CDC6_THET1 Length = 159 Score = 89.4 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 6/109 (5%) Query: 20 LEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPA 79 + L L A++ P V + S+V +G T+V A Sbjct: 54 AKHSQAFLEGRIKELEKLLANAEVIDRSAQPAGTVGLGSKVTVE--ENGRTYTYTIVDGA 111 Query: 80 KMTDSNT---QLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 + ++S + VG+ALLG RVGDS+ E+P G ++L +E Sbjct: 112 EAGRGRDGEVRISSKSAVGSALLGRRVGDSVEVEVPAG-KLTFKILSVE 159 >UniRef50_Q88ZS9 Transcription elongation factor greA 1 n=7 Tax=Lactobacillus RepID=GREA1_LACPL Length = 156 Score = 89.4 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 14/118 (11%) Query: 9 NDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDG 68 D R++ L LN +L AQ+ P + +D + + V L D Sbjct: 52 AKRDLGRLESRL-----------RYLNKQLQYAQIVQPAD--NDQLDIGKFVTIEFLDDH 98 Query: 69 EVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 + LV + ++S +P+G AL V D + P G ++V+ ++ Sbjct: 99 DQITYQLVGKQEANLEQQKISFTSPIGQALANHTVDDVVTVNAPNGAYQ-VKVIAVKR 155 >UniRef50_B1XUH7 Transcription elongation factor GreB n=2 Tax=Polynucleobacter necessarius RepID=B1XUH7_POLNS Length = 168 Score = 89.4 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 47/113 (41%), Gaps = 9/113 (7%) Query: 22 QPAYAGLPIADALNAELDRAQMCSPE-----EMPHDVVTMNSRVKF---RNLSDGEVRVR 73 + LN L+ A + E D V + V + G+ Sbjct: 54 KRLREIDRRIRFLNKRLEFAIVVDNSARKSGENDADQVFFGASVTYSALEGPEAGKRTSI 113 Query: 74 TLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 T+V ++ + +S ++P+ AL+ R+GD + + P G T +E+L+++Y Sbjct: 114 TIVGVDEVDLDKSHVSWVSPIAKALIKSRIGDCVFIQTPTG-PTEIEILDVQY 165 >UniRef50_D0WJ76 Transcription elongation factor n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WJ76_9ACTN Length = 161 Score = 89.1 bits (220), Expect = 4e-17, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 3/107 (2%) Query: 20 LEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPA 79 + +N L A + + + V + S V G RV T+V A Sbjct: 58 AKNEQGLMEARIAQINDILSNAVLVEAPK-RSNRVNIGSTVTV--DMGGRERVFTIVGAA 114 Query: 80 KMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 + S+ ++S +PVGAALLG + GD E P G ++++++E+ Sbjct: 115 EADVSSGKISNESPVGAALLGGKKGDHFTAEGPTGRVIEMDIVKIEH 161 >UniRef50_B0N6V6 Transcription elongation factor n=4 Tax=Bacteria RepID=B0N6V6_9FIRM Length = 161 Score = 89.1 bits (220), Expect = 4e-17, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 54/138 (39%), Gaps = 14/138 (10%) Query: 1 MSRPTIIINDLDAERID-ILLEQPAYAGLPI--------ADALNAELDRAQMCSPEEMPH 51 + RP + I +L R L E Y ++ L A++ S E+M Sbjct: 26 VERPKV-IEELQLARSQGDLSENADYDAAREKQAHLESRIKEIDYMLQNAEVISEEQMDL 84 Query: 52 DVVTMNSRVKFRN--LSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHW 109 VV + V + D E +V + N ++S +P+ A+LG V + + Sbjct: 85 KVVKPGTTVTILDLSEKDAEPESYQIVGYTETDPLNGKISNESPLAKAVLGHGVNEIVTV 144 Query: 110 ELPGGVATHLEVLELEYQ 127 + ++++ +E++ Sbjct: 145 GVAD--PYDVKIVNIEFK 160 >UniRef50_A6STV7 Transcription elongation factor GreB n=2 Tax=Oxalobacteraceae RepID=A6STV7_JANMA Length = 175 Score = 89.1 bits (220), Expect = 4e-17, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 45/108 (41%), Gaps = 3/108 (2%) Query: 21 EQPAYAGLPIADALNAELDRAQMCSPE-EMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPA 79 E L ++ A++ D + + V + N + GE T+V Sbjct: 67 EASLREIEQRIHYLQTRVESAEVVDASVHADGDRIFFGASVDYEN-TAGETHTATIVGLD 125 Query: 80 KMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEYQ 127 ++ + ++S ++P+ +LLG GD++ + P G L VL + Y Sbjct: 126 ELDPAQGRISWLSPLAQSLLGAEEGDTVLLQTPAG-PEELHVLTVRYP 172 >UniRef50_A7HXN3 GreA/GreB family elongation factor n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HXN3_PARL1 Length = 171 Score = 88.3 bits (218), Expect = 7e-17, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 1/125 (0%) Query: 7 IINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLS 66 ++ D R+++ + P+ + A+L+ A++ S E+ V T+ S V++R + Sbjct: 26 LLTRHDFARLELACFEQLDLLNPMQPFVRAKLEEARIVSGNEIAETVATLGSIVRYR-IE 84 Query: 67 DGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 D + R L + + LSV+ P+G ALLG GD EL G + + +E+ Sbjct: 85 DRMLERRLLQLDNRHAPNGQYLSVLTPIGLALLGRSTGDLCEAELFNGAKLTIRIALIEH 144 Query: 127 QPEAA 131 QPEA Sbjct: 145 QPEAE 149 >UniRef50_C7N7T1 Transcription elongation factor n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N7T1_SLAHD Length = 155 Score = 87.9 bits (217), Expect = 8e-17, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 3/107 (2%) Query: 20 LEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPA 79 + +N L A + + + VT+ S V G RV T+V A Sbjct: 52 AKNEQGMLEVRIAQINDILANATVVEAPK-RSNRVTVGSTVTV--DMGGRERVFTIVGGA 108 Query: 80 KMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 + + ++S +PVG+ LLG + GD + E P G + VL +E+ Sbjct: 109 EANAAEGKISNDSPVGSVLLGSKKGDQLTTEGPTGRKIEITVLNIEH 155 >UniRef50_B3PM73 Transcription elongation factor greA n=1 Tax=Mycoplasma arthritidis 158L3-1 RepID=GREA_MYCA5 Length = 159 Score = 87.9 bits (217), Expect = 9e-17, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 48/131 (36%), Gaps = 11/131 (8%) Query: 3 RPTIIINDLDAERIDILLEQPAYAGLP--------IADALNAELDRAQMCSPEEMPH-DV 53 RP +I +A L E Y + LD ++ + V Sbjct: 30 RPQVIEEIKEARNQGDLSENAEYDAARDKQATIENEITEIQHILDNYEIIKTQTNRQVSV 89 Query: 54 VTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPG 113 V + S V +L D V +V N ++S +P+ A++G + G+ + E P Sbjct: 90 VRIGSNVSVVSLKDDTVINFQIVGALDTDPFNGKISNTSPLAKAVIGRKAGEVVEVEAPN 149 Query: 114 GVATHLEVLEL 124 ++++ + Sbjct: 150 --KYQVKIVHV 158 >UniRef50_UPI0001746370 transcript cleavage factor/unknown domain fusion protein n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001746370 Length = 627 Score = 87.9 bits (217), Expect = 9e-17, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 43/100 (43%), Gaps = 3/100 (3%) Query: 35 NAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPV 94 EL RA+ + + V + + V +++ G+ +T++ + LS ++ + Sbjct: 524 ERELRRARGTDFVGVSTETVGIGTIVDLQDVGTGKTETQTILGAWDGDPDQSILSYLSEM 583 Query: 95 GAALLGLRVGDSIHWELPGGVATHLEVLELEY---QPEAA 131 AL+G RVGD ++++ + Q EAA Sbjct: 584 AKALIGKRVGDEAELPTDTHGTRKVKIVSIRPYRTQAEAA 623 >UniRef50_C4ZAT8 Transcription elongation factor GreA n=21 Tax=Firmicutes RepID=C4ZAT8_EUBR3 Length = 167 Score = 87.9 bits (217), Expect = 9e-17, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 42/106 (39%), Gaps = 1/106 (0%) Query: 20 LEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPA 79 +Q L + A + +E D V M + V D E +V Sbjct: 50 AKQFKNQNESRIRYLEKMIKTAVVI-SDESKDDEVGMFNTVDVYFEDDDETETYKIVTTV 108 Query: 80 KMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 + +S +P+GAA+ G +VGD ++ + +++++++ Sbjct: 109 RGNSLKNLISKESPLGAAIFGHKVGDRCEVKVNDDYSYFVKIMKIQ 154 >UniRef50_A7VBG3 Putative uncharacterized protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VBG3_9CLOT Length = 195 Score = 87.5 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 1/105 (0%) Query: 20 LEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPA 79 ++ A L+ + A++ E D V +N+ V+ D E +V Sbjct: 80 AKKDKNANEKRIRYLDRMVRTAEIIKDESAD-DEVGLNNTVRVYFEEDEEEDTYRIVTTV 138 Query: 80 KMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 + N +S ++P+G ALLG +VGD + G H+ + E+ Sbjct: 139 REDVLNGIISNISPMGKALLGHKVGDRVEVVPGKGDPFHIVIREI 183 >UniRef50_A4E9C2 Transcription elongation factor n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9C2_9ACTN Length = 156 Score = 87.5 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 9/118 (7%) Query: 9 NDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDG 68 ++ DA + + A L AQ+ V++ S V + +G Sbjct: 48 SEYDAAK------DKQAQNAARIAEIQAILANAQV--AATTGDLTVSIGSTVSLID-PNG 98 Query: 69 EVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 EV TLV + ++S +PVG A++G GDS+ P G + ++ Sbjct: 99 EVMEVTLVGTTETNSLEHKISNESPVGHAIIGHGEGDSVEVVTPSGKTRVYTIAKIAR 156 >UniRef50_A6SZ83 Transcription elongation factor, greA family n=2 Tax=Oxalobacteraceae RepID=A6SZ83_JANMA Length = 139 Score = 87.5 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 48/121 (39%), Gaps = 3/121 (2%) Query: 7 IINDLDAERIDILLEQPAYAGL---PIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFR 63 + DA + + E G + L + + + + VT+ S V + Sbjct: 6 YLTQNDAATLSRIAEHLLRMGEVEINAGEQLIDIISTSIILPVDVQRKGYVTLYSTVSYS 65 Query: 64 NLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLE 123 + EVR T+V P +S + P+G AL+G + ++ LP L++L+ Sbjct: 66 PVDTEEVRKLTIVCPQDANPQLALISALTPIGLALIGRKALTTVEVALPSKRVEKLKILD 125 Query: 124 L 124 + Sbjct: 126 V 126 >UniRef50_P47524 Transcription elongation factor greA n=4 Tax=Mycoplasma RepID=GREA_MYCGE Length = 161 Score = 87.5 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 50/135 (37%), Gaps = 11/135 (8%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPI--------ADALNAELDRAQMCSPEEMPHD 52 + RP II +A L E Y + L A++ S + Sbjct: 26 VKRPEIIRLLQEARDQGDLSENADYDAAKAQQGEIETRIAEIQDILANAKLISDHQAKTK 85 Query: 53 V--VTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWE 110 V V++ S V+ + S T+V + ++S +P+ A+ G +GD Sbjct: 86 VTKVSLGSTVEIYDYSSKSNEKYTIVGTLEANPEEHKISNESPLALAIYGRLIGDECDV- 144 Query: 111 LPGGVATHLEVLELE 125 + V +++L++ Sbjct: 145 VGIEVPYRVKILKIS 159 >UniRef50_Q2G8D8 GreA/GreB family elongation factor n=4 Tax=cellular organisms RepID=Q2G8D8_NOVAD Length = 182 Score = 87.5 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 48/138 (34%), Gaps = 12/138 (8%) Query: 2 SRPTIIINDLDAERIDILLEQPAY--------AGLPIADALNAELDRAQMCSPEEM-PHD 52 RP I+ A E Y L + +++ P Sbjct: 48 ERPAIVEIVSWAAGNGDRSENGDYLYGRKRMREIDRELAFLARRMKASRVVDPARQEDRS 107 Query: 53 VVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELP 112 V + V+ + D +V TLV + S + AP+ AL G RVGD LP Sbjct: 108 RVLFGATVEIADEDDNR-KVLTLVGDDEQDASKGLIGWSAPIAKALRGSRVGDLRIVRLP 166 Query: 113 GGVATHLEVLELEYQPEA 130 G E++ + Y PEA Sbjct: 167 SG-QKEWEIMAISY-PEA 182 >UniRef50_B1ZZX3 GreA/GreB family elongation factor n=3 Tax=Verrucomicrobia RepID=B1ZZX3_OPITP Length = 616 Score = 87.1 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 45/109 (41%), Gaps = 1/109 (0%) Query: 18 ILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVY 77 + +Q + L +L RA++ ++ D V++ + V+ ++ DG T++ Sbjct: 503 KMAKQEQQVLMAHKTNLERDLGRARISDFKDASIDQVSVGTVVEVASVKDGHHTTYTVLG 562 Query: 78 PAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 +S P GAALLG + GD I+ + ++ + Sbjct: 563 AWDGDPEKHFISYKTPFGAALLGKKTGDVINVKT-DASDEDYAIVSIAR 610 >UniRef50_C4L6P4 GreA/GreB family elongation factor n=1 Tax=Exiguobacterium sp. AT1b RepID=C4L6P4_EXISA Length = 152 Score = 86.7 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 3/106 (2%) Query: 20 LEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPA 79 + LN LD A + + +VVT +RV R + E +V A Sbjct: 49 AVRQYERIEADILELNHLLDDATIVES--VQSEVVTFGNRVVIREVQQEETERYRIVSEA 106 Query: 80 KMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 + +SV +P+G L+G +G +I E PGG +EVL +E Sbjct: 107 EADLERGSISVTSPLGRRLMGATMGQTIQVETPGGTIQ-VEVLHIE 151 >UniRef50_D1R523 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R523_9CHLA Length = 731 Score = 86.7 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 49/120 (40%), Gaps = 10/120 (8%) Query: 10 DLDAER-IDILLEQPAY--------AGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRV 60 +++A R + L E Y L+ +L+RA++ + +++ + V++ S V Sbjct: 608 EIEAARSLGDLRENSEYKFALEKRSRLQGELKRLSEQLNRARIITKDDIYLNQVSVGSIV 667 Query: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE 120 + + V T++ P LS + A+LG +VG+ + ++ Sbjct: 668 ELEDPEKN-VVTYTILGPWDADADTNILSFQSKFAEAMLGRKVGEEFEFRNQNFTIRTIK 726 >UniRef50_C6B1R3 GreA/GreB family elongation factor n=16 Tax=cellular organisms RepID=C6B1R3_RHILS Length = 160 Score = 86.7 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 10/119 (8%) Query: 10 DLDAER-IDILLEQPAYAGLP--IADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLS 66 DA I+ + E+ A P L A L AQ+ P D V S V FR Sbjct: 49 AYDAASPIEDVNERRRQAASPLRDLRYLTARLRTAQLM-PSPTSIDTVAFGSTVTFR-RD 106 Query: 67 DGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 DG V+ +V + +S ++PV L+G VGD + LE++ + Sbjct: 107 DGRVQTYRIVGEDEADPKAGSISYVSPVARLLMGKAVGDMVE-----TGGQELEIIAIA 160 >UniRef50_B1ZQE9 GreA/GreB family elongation factor n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZQE9_OPITP Length = 166 Score = 86.7 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 2/98 (2%) Query: 28 LPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQ 87 A L L A++ S +V ++V + DG +V + Sbjct: 71 DERARELQQILATAEIISSPAPDRSIVRFGAKVTVK-EEDGTTSTYRIVGIDETEFYTGG 129 Query: 88 LSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 +S +P+ ALLG VGD I ++ P G LE+ +E Sbjct: 130 ISFQSPLAQALLGASVGDRIQFQSPAG-PRQLEIQLIE 166 >UniRef50_B1I1G7 GreA/GreB family elongation factor n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I1G7_DESAP Length = 154 Score = 86.4 bits (213), Expect = 2e-16, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 42/100 (42%), Gaps = 1/100 (1%) Query: 28 LPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQ 87 + + L RA++ + P + + ++ +L G + +V P ++ + Sbjct: 54 DDYLNRVRELLARARVVEGQCPPLPLTLIGCDIRVEDLDRGHSEMFRVVSPYEINPAAGH 113 Query: 88 LSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEYQ 127 +S ++PVG LL G + + PGG V+ + Y Sbjct: 114 VSFLSPVGRGLLLKEPGQVLAVQAPGGTFR-YRVVSVTYP 152 >UniRef50_B9XT30 GreA/GreB family elongation factor n=1 Tax=bacterium Ellin514 RepID=B9XT30_9BACT Length = 606 Score = 86.4 bits (213), Expect = 2e-16, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 43/105 (40%), Gaps = 1/105 (0%) Query: 20 LEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPA 79 ++ + L +EL RA+ D V++ + VK +L+ + ++ Sbjct: 497 AKEMQKILMRRKAELESELVRARGTDYLNPKTDAVSIGTIVKVTDLNSSHIEHFNILGAW 556 Query: 80 KMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 +S +AP+ +LL + G+ + +E+ G + E+ Sbjct: 557 DSDPEKNVISYLAPLAQSLLNRKPGEEVDYEM-DGQKRRFRIDEI 600 >UniRef50_UPI00017427C8 transcription elongation factor GreA n=1 Tax=candidate division TM7 single-cell isolate TM7a RepID=UPI00017427C8 Length = 151 Score = 86.4 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 49/132 (37%), Gaps = 13/132 (9%) Query: 2 SRPTIIINDLDAERIDILLEQPAYAGLPI--------ADALNAELDRAQMCSPEEMPHDV 53 R I +A L E Y + L A + + Sbjct: 25 RRGEIAEKIAEARDYGDLSENAEYDAAREEQGIVETRIAEIENILQNAAIITGGV--SGQ 82 Query: 54 VTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPG 113 V + S V+ ++ + V T+V P + ++S +P+GAAL+G +V D + P Sbjct: 83 VGLGSVVEL--MTGSKTAVYTVVGPVEADPLEGKVSNESPIGAALMGKKVDDIVEINTPK 140 Query: 114 GVATHLEVLELE 125 G +++ ++ Sbjct: 141 G-KLEYKIISIK 151 >UniRef50_B9KMW2 Transcription elongation factor n=3 Tax=Rhodobacter sphaeroides RepID=B9KMW2_RHOSK Length = 164 Score = 86.0 bits (212), Expect = 3e-16, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 2/114 (1%) Query: 14 ERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVR 73 R D L P A L A + A + P P D V V + G V Sbjct: 52 AREDRLDRLPEAAAERDIRYLEARIASAILVDPAAQPLDEVAFGLAVTVED-EAGRRTVW 110 Query: 74 TLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEYQ 127 + + + +++ AP+ AL+G R+G+ + W P G L V + + Sbjct: 111 EITGEDEAQATARRIAPQAPLARALMGARLGEKVVWTRPAGE-VTLTVTGIAHP 163 >UniRef50_D0KZQ0 Transcription elongation factor GreB n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KZQ0_HALNC Length = 175 Score = 86.0 bits (212), Expect = 3e-16, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 49/141 (34%), Gaps = 13/141 (9%) Query: 1 MSRPTIIINDLDAERIDILLEQPAY--------AGLPIADALNAELDRAQMCSPEEMPHD 52 + R ++ +A + E Y L L ++ + Sbjct: 24 VERRLVVQAVSEAAALGDRSENAEYIYGKRRLREIDRRIRYLQKRLGDIKVVRQPPTDMN 83 Query: 53 VVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELP 112 V +R+ D + LV P ++ +N +S+ +P+ A+LG + + LP Sbjct: 84 KVYFGARITLLYADD-REQTVCLVGPDEIDPANQLISIDSPLAKAVLGKALDAEVVLFLP 142 Query: 113 GG----VATHLEVLELEYQPE 129 H E++ +EY E Sbjct: 143 SETSTPRRVHAEIIAIEYPSE 163 >UniRef50_A6X2G5 GreA/GreB family elongation factor n=2 Tax=Ochrobactrum RepID=A6X2G5_OCHA4 Length = 156 Score = 86.0 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 9/125 (7%) Query: 6 IIINDLDAERIDI-LLEQPAYAGLPIADALNAEL-------DRAQMCSPEEMPHDVVTMN 57 + + + + R+ L + ++ +L + A++ P DVV Sbjct: 33 LTMIEDEIARLQRELADANVAGERSAIARISRDLRYWTTRRENAELSVP-VPDSDVVRFG 91 Query: 58 SRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVAT 117 V+ NL DG+VR T+V + SN ++S +APV L G VGD + Sbjct: 92 MTVELENLDDGKVRRWTIVGEDEADPSNGKISHVAPVAILLFGKPVGDVVKINNVEWEIV 151 Query: 118 HLEVL 122 L+++ Sbjct: 152 SLKIV 156 >UniRef50_B9J7D6 Transcription elongation factor protein n=52 Tax=Alphaproteobacteria RepID=B9J7D6_AGRRK Length = 160 Score = 85.6 bits (211), Expect = 5e-16, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 39/105 (37%), Gaps = 7/105 (6%) Query: 21 EQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAK 80 + A L L + AQ P D+V S V F + DG V+ +V + Sbjct: 63 RRQAAGPLRDLRYLAERIRTAQPI-PAPASIDIVAFGSTVTF-SRDDGRVQTYRIVGEDE 120 Query: 81 MTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 +S ++PV L+G VGD LE++ + Sbjct: 121 ADPKTGSISFVSPVAKLLMGKSVGDVASV-----GDQELEIIAIA 160 >UniRef50_Q5SJG6 Anti-cleavage anti-GreA transcription factor Gfh1 n=6 Tax=Thermaceae RepID=Q5SJG6_THET8 Length = 156 Score = 85.2 bits (210), Expect = 6e-16, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 6/118 (5%) Query: 10 DLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGE 69 D D ++ +Q D+L L RA + +V+ + S V+ + GE Sbjct: 42 DYDDSGLEA-AKQEKARIEARIDSLEDILSRAVILEEG--SGEVIGLGSVVELEDPLSGE 98 Query: 70 VRVRTLVYPAKMTDSNT--QLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 +V PA+ +T ++S +P+G ALLG RVGD + + P G V+ + Sbjct: 99 RLSVQVVSPAEANVLDTPMKISDASPMGKALLGHRVGDVLSLDTPKGR-REFRVVAIH 155 >UniRef50_Q2SSM5 Transcription elongation factor greA n=6 Tax=Mollicutes RepID=GREA_MYCCT Length = 157 Score = 85.2 bits (210), Expect = 6e-16, Method: Composition-based stats. Identities = 22/134 (16%), Positives = 54/134 (40%), Gaps = 10/134 (7%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPI--------ADALNAELDRAQMCSPEEM-PH 51 ++RP +I ++A L E Y + ++RA++ + Sbjct: 25 VTRPKVIEELVEARNQGDLSENADYDAARNRQAEVEARIKEVETLINRAKVIDNSKTHST 84 Query: 52 DVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWEL 111 V + S V+F + D + + +V + + +S +P+ A+LG ++GD++ + Sbjct: 85 GEVKIGSTVEFLSSLDHKTKEIKIVGAIEADPFSRLISNESPIAKAILGKKIGDTVEIKD 144 Query: 112 PGGVATHLEVLELE 125 + + ++ Sbjct: 145 IL-KPYKITIKSIK 157 >UniRef50_A5D4X0 Putative uncharacterized protein n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D4X0_PELTS Length = 150 Score = 84.4 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 1/98 (1%) Query: 28 LPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQ 87 L+ + A + VT+ S V+ +NLS+ EV +V P Sbjct: 48 ENYIQRLDRLIRNASKSKIADNKVPFVTIGSEVEIQNLSEQEVYKYFIVNPFYSEVREGH 107 Query: 88 LSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 +S ++PVG +LL +VGD + + PGGV ++ + Sbjct: 108 ISFLSPVGKSLLLKKVGDEVEVKAPGGVFR-YKIKSIR 144 >UniRef50_A9NGN4 Transcription elongation factor greA n=7 Tax=Acholeplasmataceae RepID=GREA_ACHLI Length = 158 Score = 84.0 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 18/117 (15%), Positives = 43/117 (36%), Gaps = 7/117 (5%) Query: 9 NDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDG 68 D DA R + + + L ++ + V + +V + Sbjct: 49 ADYDAARNEQ------ARIEARILEIESILKNVKIIRTND-DSTTVNIGKKVLLHFVEKN 101 Query: 69 EVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 + +V + N ++S+ +P+G A+ G VGD + + +++E+ + Sbjct: 102 KDVEYHVVGTIEADPKNFKISIESPLGRAIKGKEVGDLVQIKSATNKQSNVEIKAIS 158 >UniRef50_Q88Q22 Transcription elongation factor, putative n=11 Tax=Pseudomonas RepID=Q88Q22_PSEPK Length = 165 Score = 83.7 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 3/103 (2%) Query: 22 QPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKM 81 Q +A + AQ+ P H V + SRV+F + D + +V LV + Sbjct: 62 QRLADTERDLRYFSARVQSAQVV-PAATSHSKVQIGSRVRFVDAQD-QEQVVQLVGEDEA 119 Query: 82 TDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 + ++ +P+G ALLG GD + W P G +EV+E+ Sbjct: 120 DAGHGLINWGSPLGRALLGAGPGDEVVWRRPVGEQV-IEVVEI 161 >UniRef50_Q6MF39 Putative uncharacterized protein n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MF39_PARUW Length = 723 Score = 83.7 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 52/125 (41%), Gaps = 15/125 (12%) Query: 10 DLDAER-IDILLEQPAYAGLPIAD-ALNAELD-------RAQMCSPEEMPHDVVTMNSRV 60 +++A R + L E + L +EL RA++ +P+++ D V + S + Sbjct: 600 EIEAARALGDLRENSEFKFAQERRARLQSELKTLSEQFGRARIITPDDILTDEVGIGSVI 659 Query: 61 KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLE 120 + G+ +++ P LS+ + A++G ++GD ++ + Sbjct: 660 DLIDSQ-GQKIRYSILGPWDADPEKNILSLNSKFAQAMIGKKIGDQFQFK-----DETFK 713 Query: 121 VLELE 125 VL L Sbjct: 714 VLSLH 718 >UniRef50_B4D3Z7 GreA/GreB family elongation factor n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D3Z7_9BACT Length = 609 Score = 83.3 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 15/106 (14%), Positives = 37/106 (34%), Gaps = 1/106 (0%) Query: 20 LEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPA 79 ++ +L +A+ V++ + V + DG V T++ Sbjct: 501 AKEMQRVLSRRRAETERDLAQARGTDFANPDTAQVSVGTIVTLKETGDGRTDVYTILGAW 560 Query: 80 KMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 +S + + AL+G + G+ ++ G + ++E Sbjct: 561 DGDPDKGIVSYQSALAQALIGHKPGEQVNVPTEHG-DRTARIEKIE 605 >UniRef50_Q9Z7G4 Transcription elongation factor greA n=13 Tax=Chlamydiaceae RepID=GREA_CHLPN Length = 722 Score = 82.9 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 49/122 (40%), Gaps = 14/122 (11%) Query: 12 DAERIDILLEQPAY--------AGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFR 63 DA + L E Y L+ E++RA++ + + + D V + +V + Sbjct: 599 DARSLGDLRENSEYKFALEKRARLQEEIRVLSEEINRARILTKDLVFTDKVGVGCKVTLK 658 Query: 64 NLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLE 123 GEV T++ P + LS+ + + +LG ++ D + + ++ Sbjct: 659 -GDAGEVVEYTILGPWDADPDSCILSLQSKLAQNMLGKKLNDVVILQG-----KEYKISR 712 Query: 124 LE 125 ++ Sbjct: 713 IQ 714 >UniRef50_B2UNZ9 GreA/GreB family elongation factor n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UNZ9_AKKM8 Length = 615 Score = 82.5 bits (203), Expect = 4e-15, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 39/128 (30%), Gaps = 3/128 (2%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAG--LPIADALNAELDRAQMCSPEEMPHDVVTMNS 58 + I + D + L L A+ M + Sbjct: 485 LHNKKISRAEGDLRENGGYQDAKEVEKVLNRRRAELEHALALARGTDFAVTDTSRAAMGT 544 Query: 59 RVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATH 118 +V + L+ GE V T++ +S ++ VG L G VGD + G Sbjct: 545 KVTLQPLNGGEPVVYTILGAWDTNPEKHIVSYLSQVGKELTGKSVGDQVKIVPMDGDKKK 604 Query: 119 -LEVLELE 125 + ++E Sbjct: 605 VYTITKIE 612 >UniRef50_UPI0001C31C12 transcription elongation factor GreA n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31C12 Length = 154 Score = 81.3 bits (200), Expect = 9e-15, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 49/132 (37%), Gaps = 12/132 (9%) Query: 1 MSRPTIIINDLDAERIDILLEQPAYAGLPIAD--------ALNAELDRAQMCSPEEMPHD 52 ++R I A L E Y L A + D Sbjct: 25 VARREIAARIRTAREWGDLKENAEYHAAKEDQAHLETRILKLRERERNATVTEASS-DVD 83 Query: 53 VVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELP 112 +V S V+ + G+ TLV A+ + + +LS+ +PV AL+G R G+ + + P Sbjct: 84 IVAFGSTVEVE--TGGKNARYTLVGAAEASARDGKLSIESPVARALIGARAGEDVQVQTP 141 Query: 113 GGVATHLEVLEL 124 G L V+ + Sbjct: 142 SGA-RILRVVRV 152 >UniRef50_C6XVH8 Transcription elongation factor n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XVH8_PEDHD Length = 125 Score = 81.0 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 2/122 (1%) Query: 5 TIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRN 64 +II++ + + + + + + L EL A+ +++P DVVT+N+RV+ + Sbjct: 4 SIILSTGIFDLLKDHIRRRKLSKYN-QEKLEQELRNARQILSKDIPADVVTVNTRVRVKE 62 Query: 65 LSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLEL 124 L G TLV PAK + + LS+++P+G A++G G + WE+P G + E+ Sbjct: 63 LETGAEFNYTLVPPAKARNKHNTLSILSPIGVAMVGYSQGSELKWEMPEG-IKAYRIEEV 121 Query: 125 EY 126 Sbjct: 122 TR 123 >UniRef50_UPI0001746B72 nucleoside diphosphate kinase regulator protein, putative n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001746B72 Length = 137 Score = 80.6 bits (198), Expect = 1e-14, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 7/126 (5%) Query: 8 INDLDAERIDILLEQPAYAGLPIADA---LNAELDRAQMC-SPEEMPHDVVTMNSRVKFR 63 I+ D + L+ A L L A++ + V + + V+ Sbjct: 9 ISQSDLHTLRTFLDHDDAFNPLDARERSLLIERLQDAKVFEDESDDEPSVAGLQTLVRVE 68 Query: 64 NLSD--GEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEV 121 +LS + TLV P + + Q+S+++P+GAA+ G G + + P G L V Sbjct: 69 DLSTSPPDQFDFTLVLPHEANFEDDQISILSPLGAAVFGRSAGTQVVMDSPTGTRRLL-V 127 Query: 122 LELEYQ 127 L + + Sbjct: 128 LAVFRK 133 >UniRef50_B4RDE4 Transcription elongation factor GreA/GreB, family n=1 Tax=Phenylobacterium zucineum HLK1 RepID=B4RDE4_PHEZH Length = 161 Score = 80.6 bits (198), Expect = 1e-14, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 44/118 (37%), Gaps = 3/118 (2%) Query: 8 INDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSD 67 + DLD E A AQ+ D V +RV FR Sbjct: 41 LADLDQRIAGCEDEAQMAWLRRDQRYWAARRANAQVVE-SPADPDEVAFGTRVTFR-KDG 98 Query: 68 GEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 G LV + + +LS +AP+ A++G G+++ E A LE+L +E Sbjct: 99 GAPETVELVGEDEAEPAQGRLSWVAPLARAMIGAMPGETVELETRT-PAIRLEILAVE 155 >UniRef50_B6BTF1 GreA/GreB family elongation factor n=2 Tax=Betaproteobacteria RepID=B6BTF1_9PROT Length = 164 Score = 79.8 bits (196), Expect = 2e-14, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 46/129 (35%), Gaps = 8/129 (6%) Query: 3 RPTIIINDLDAERIDILLEQPAYAG-----LPIADALNAELDRAQMCSPEEMPHDVVTMN 57 + TI + + + + I L + P + A + E ++ V Sbjct: 39 KETIHLIETEIKSIKELEDSPENKQNKMKLERDLRYYLKRFETAILIDKHE-ENNKVLFG 97 Query: 58 SRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVAT 117 + V + + E +V + +LS ++P+ L+G +GD + W+ G Sbjct: 98 AHVILID-ENDEAYKFQIVGEDEADIKQNKLSYVSPLAKELIGSLIGDEVVWKRADGNRV 156 Query: 118 HLEVLELEY 126 + + Y Sbjct: 157 VF-IDSINY 164 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.314 0.165 0.482 Lambda K H 0.267 0.0504 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,021,793,927 Number of Sequences: 3077464 Number of extensions: 47186169 Number of successful extensions: 139803 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 708 Number of HSP's successfully gapped in prelim test: 102 Number of HSP's that attempted gapping in prelim test: 138649 Number of HSP's gapped (non-prelim): 829 length of query: 136 length of database: 1,040,396,356 effective HSP length: 101 effective length of query: 35 effective length of database: 729,572,492 effective search space: 25535037220 effective search space used: 25535037220 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 88 (38.2 bits)