17/01/2012 14:57:50 : INFO  : Run start: Tue Jan 17 14:57:50 GMT 2012
17/01/2012 14:57:50 : INFO  : Initialised job
17/01/2012 14:57:51 : INFO  : Renaming log file 'phyre2_20120117_145750.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/6d69d8d5fdc8356f/phyre_20120117_145750.log'
17/01/2012 14:57:51 : INFO  : Initialised job:
Sequence
>batch____
MKNIKFSLAWQILFAMVLGILLGSYLHYHSDSRDWLVVNLLSPAGDIFIHLIKMIVVPIV
ISTLVVGIAGVGDAKQLGRIGAKTIIYFEVITTVAIILGITLANVFQPGAGVDMSQLATV
DISKYQSTTEAVQSSSHGIMGTILSLVPTNIVASMAKGEMLPIIFFSVLFGLGLSSLPAT
HREPLVTVFRSISETMFKVTHMVMRYAPVGVFALIAVTVANFGFSSLWPLAKLVLLVHFA
ILFFALVVLGIVARLCGLSVWILIRILKDELILAYSTASSESVLPRIIEKMEAYGAPVSI
TSFVVPTGYSFNLDGSTLYQSIAAIFIAQLYGIDLSIWQEIILVLTLMVTSKGIAGVPGV
SFVVLLATLGSVGIPLEGLAFIAGVDRILDMARTALNVVGNALAVLVIAKWEHKFDRKKA
LAYEREVLGKFDKTADQ

17/01/2012 14:57:51 : INFO  : Checked sequence
17/01/2012 14:57:51 : INFO  : Finding homologues with PSI-BLAST
17/01/2012 14:57:51 : INFO  : PSI-BLAST 3 iterations
17/01/2012 15:00:43 : INFO  : PSI-BLAST 5 iterations
17/01/2012 15:04:06 : INFO  : Finished PSI-BLAST
17/01/2012 15:04:06 : INFO  : Running Buildali to generate a3m file
17/01/2012 15:14:58 : INFO  : Converting to HMM
17/01/2012 15:15:00 : INFO  : Calibrating HMM
17/01/2012 15:15:12 : INFO  : Searching HMM database
17/01/2012 15:23:54 : INFO  : Finished buildali
17/01/2012 15:23:54 : INFO  : Predicting secondary structure
17/01/2012 15:23:55 : INFO  : Predicted secondary structure (PSI-Pred)
17/01/2012 15:23:55 : INFO  : Predicting Disordered regions
17/01/2012 15:23:55 : INFO  : Predicted Disorder (Disopred)
17/01/2012 15:23:55 : INFO  : Running memsat_svm check
17/01/2012 15:24:20 : INFO  : Globular protein
17/01/2012 15:24:20 : INFO  : Predicted Transmembrane (memsat_svm) ID '6d69d8d5fdc8356f'
17/01/2012 15:24:20 : INFO  : Initialising fold library search
17/01/2012 15:24:20 : INFO  : Initialised search input
17/01/2012 15:24:20 : INFO  : Building Ensemble models
17/01/2012 15:24:21 : INFO  : Building hh.d2nwwa1.model.1.pdb
17/01/2012 15:24:21 : INFO  : Building d2nwwa1.1.pdb
17/01/2012 15:24:21 : INFO  : Building d1a77a1.2.pdb
17/01/2012 15:24:22 : INFO  : Building c1dpqA_.3.pdb
17/01/2012 15:24:22 : INFO  : Building d1mc8a1.4.pdb
17/01/2012 15:24:22 : INFO  : Building d1iwga8.5.pdb
17/01/2012 15:24:23 : INFO  : Building d1b43a1.6.pdb
17/01/2012 15:24:23 : INFO  : Building c3ah5E_.7.pdb
17/01/2012 15:24:24 : INFO  : Building d1ul1x1.8.pdb
17/01/2012 15:24:24 : INFO  : Building d1rxwa1.9.pdb
17/01/2012 15:24:24 : INFO  : Building d1o26a_.10.pdb
17/01/2012 15:24:25 : INFO  : Building d1xo1a1.11.pdb
17/01/2012 15:24:25 : INFO  : Building c2klzA_.12.pdb
17/01/2012 15:24:25 : INFO  : Building d1fp1d1.13.pdb
17/01/2012 15:24:26 : INFO  : Building c2vy8A_.14.pdb
17/01/2012 15:24:26 : INFO  : Building d2e74e1.15.pdb
17/01/2012 15:24:27 : INFO  : Building c2e75E_.16.pdb
17/01/2012 15:24:27 : INFO  : Building c2e76E_.17.pdb
17/01/2012 15:24:27 : INFO  : Building c2e74E_.18.pdb
17/01/2012 15:24:28 : INFO  : Building c1vf5R_.19.pdb
17/01/2012 15:24:28 : INFO  : Building c1vf5E_.20.pdb
17/01/2012 15:24:31 : INFO  : Finished HH model building
17/01/2012 15:24:31 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
17/01/2012 15:24:34 : INFO  : html domain output complete ID '6d69d8d5fdc8356f'
17/01/2012 15:38:17 : INFO  : Run end  : Tue Jan 17 15:38:17 GMT 2012
