Phyre 2 Results for P21345

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Email | l.a.kelley@imperial.ac.uk
Description | P21345
Date | Thu Jan 5 11:38:04 GMT 2012
Unique Job ID | 6d69d8d5fdc8356f

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template d2nwwa1
Top template information
Fold:Proton glutamate symport protein Superfamily:Proton glutamate symport protein Family:Proton glutamate symport protein
Confidence and coverage
Confidence: | 100.0% | Coverage: | 90%
392 residues ( 90% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | K | N | I | K | F | S | L | A | W | Q | I | L | F | A | M | V | L | G | I | L | L | G | S | Y | L | H | Y | H | S | D | S | R | D | W | L | V | V | N | L | L | S | P | A | G | D | I | F | I | H | L | I | K | M | I | V | V | P | I | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | I | S | T | L | V | V | G | I | A | G | V | G | D | A | K | Q | L | G | R | I | G | A | K | T | I | I | Y | F | E | V | I | T | T | V | A | I | I | L | G | I | T | L | A | N | V | F | Q | P | G | A | G | V | D | M | S | Q | L | A | T | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | D | I | S | K | Y | Q | S | T | T | E | A | V | Q | S | S | S | H | G | I | M | G | T | I | L | S | L | V | P | T | N | I | V | A | S | M | A | K | G | E | M | L | P | I | I | F | F | S | V | L | F | G | L | G | L | S | S | L | P | A | T
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | H | R | E | P | L | V | T | V | F | R | S | I | S | E | T | M | F | K | V | T | H | M | V | M | R | Y | A | P | V | G | V | F | A | L | I | A | V | T | V | A | N | F | G | F | S | S | L | W | P | L | A | K | L | V | L | L | V | H | F | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | I | L | F | F | A | L | V | V | L | G | I | V | A | R | L | C | G | L | S | V | W | I | L | I | R | I | L | K | D | E | L | I | L | A | Y | S | T | A | S | S | E | S | V | L | P | R | I | I | E | K | M | E | A | Y | G | A | P | V | S | I
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360
Sequence |  | T | S | F | V | V | P | T | G | Y | S | F | N | L | D | G | S | T | L | Y | Q | S | I | A | A | I | F | I | A | Q | L | Y | G | I | D | L | S | I | W | Q | E | I | I | L | V | L | T | L | M | V | T | S | K | G | I | A | G | V | P | G | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? |  | ? |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420
Sequence |  | S | F | V | V | L | L | A | T | L | G | S | V | G | I | P | L | E | G | L | A | F | I | A | G | V | D | R | I | L | D | M | A | R | T | A | L | N | V | V | G | N | A | L | A | V | L | V | I | A | K | W | E | H | K | F | D | R | K | K | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | .
Sequence |  | L | A | Y | E | R | E | V | L | G | K | F | D | K | T | A | D | Q
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d2nwwa1 |

### PDB 2nww chain A domain 1

Region: 8 - 412
Aligned: 392
Modelled: 395
Confidence: 100.0%
Identity: 36%
Fold: Proton glutamate symport protein
Superfamily: Proton glutamate symport protein
Family: Proton glutamate symport protein

Phyre2
2 |
| d1a77a1 |

### PDB 1a77 chain A domain 1

Region: 335 - 373
Aligned: 38
Modelled: 39
Confidence: 48.3%
Identity: 21%
Fold: SAM domain-like
Superfamily: 5' to 3' exonuclease, C-terminal subdomain
Family: 5' to 3' exonuclease, C-terminal subdomain

Phyre2
3 |
| c1dpqA_ |

### PDB 1dpq chain A

Region: 420 - 437
Aligned: 18
Modelled: 17
Confidence: 28.8%
Identity: 17%
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib subunit;
PDBTitle: solution structure of the constitutively active mutant of2 the integrin alpha iib cytoplasmic domain.

Phyre2
4 |
| d1mc8a1 |

### PDB 1mc8 chain A domain 1

Region: 335 - 373
Aligned: 38
Modelled: 39
Confidence: 28.5%
Identity: 18%
Fold: SAM domain-like
Superfamily: 5' to 3' exonuclease, C-terminal subdomain
Family: 5' to 3' exonuclease, C-terminal subdomain

Phyre2
5 |
| d1iwga8 |

### PDB 1iwg chain A domain 8

Region: 159 - 262
Aligned: 104
Modelled: 104
Confidence: 26.8%
Identity: 5%
Fold: Multidrug efflux transporter AcrB transmembrane domain
Superfamily: Multidrug efflux transporter AcrB transmembrane domain
Family: Multidrug efflux transporter AcrB transmembrane domain

Phyre2
6 |
| d1b43a1 |

### PDB 1b43 chain A domain 1

Region: 335 - 373
Aligned: 38
Modelled: 39
Confidence: 21.4%
Identity: 18%
Fold: SAM domain-like
Superfamily: 5' to 3' exonuclease, C-terminal subdomain
Family: 5' to 3' exonuclease, C-terminal subdomain

Phyre2
7 |
| c3ah5E_ |

### PDB 3ah5 chain E

Region: 289 - 313
Aligned: 25
Modelled: 25
Confidence: 18.4%
Identity: 12%
PDB header:transferase
Chain: E: PDB Molecule:thymidylate synthase thyx;
PDBTitle: crystal structure of flavin dependent thymidylate synthase thyx from2 helicobacter pylori complexed with fad and dump

Phyre2
8 |
| d1ul1x1 |

### PDB 1ul1 chain X domain 1

Region: 335 - 373
Aligned: 37
Modelled: 39
Confidence: 18.3%
Identity: 16%
Fold: SAM domain-like
Superfamily: 5' to 3' exonuclease, C-terminal subdomain
Family: 5' to 3' exonuclease, C-terminal subdomain

Phyre2
9 |
| d1rxwa1 |

### PDB 1rxw chain A domain 1

Region: 335 - 373
Aligned: 37
Modelled: 39
Confidence: 18.2%
Identity: 24%
Fold: SAM domain-like
Superfamily: 5' to 3' exonuclease, C-terminal subdomain
Family: 5' to 3' exonuclease, C-terminal subdomain

Phyre2
10 |
| d1o26a_ |

### PDB 1o26 chain A

Region: 289 - 313
Aligned: 25
Modelled: 25
Confidence: 15.7%
Identity: 16%
Fold: Thymidylate synthase-complementing protein Thy1
Superfamily: Thymidylate synthase-complementing protein Thy1
Family: Thymidylate synthase-complementing protein Thy1

Phyre2
11 |
| d1xo1a1 |

### PDB 1xo1 chain A domain 1

Region: 336 - 373
Aligned: 38
Modelled: 38
Confidence: 12.9%
Identity: 21%
Fold: SAM domain-like
Superfamily: 5' to 3' exonuclease, C-terminal subdomain
Family: 5' to 3' exonuclease, C-terminal subdomain

Phyre2
12 |
| c2klzA_ |

### PDB 2klz chain A

Region: 412 - 436
Aligned: 25
Modelled: 25
Confidence: 11.3%
Identity: 36%
PDB header:hydrolase
Chain: A: PDB Molecule:ataxin-3;
PDBTitle: solution structure of the tandem uim domain of ataxin-3 complexed with2 ubiquitin

Phyre2
13 |
| d1fp1d1 |

### PDB 1fp1 chain D domain 1

Region: 280 - 302
Aligned: 23
Modelled: 23
Confidence: 8.9%
Identity: 13%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: "Winged helix" DNA-binding domain
Family: Plant O-methyltransferase, N-terminal domain

Phyre2
14 |
| c2vy8A_ |

### PDB 2vy8 chain A

Region: 176 - 210
Aligned: 35
Modelled: 35
Confidence: 8.6%
Identity: 11%
PDB header:transcription
Chain: A: PDB Molecule:polymerase basic protein 2;
PDBTitle: the 627-domain from influenza a virus polymerase pb22 subunit with glu-627

Phyre2
15 |
| d2e74e1 |

### PDB 2e74 chain E domain 1

Region: 10 - 26
Aligned: 17
Modelled: 17
Confidence: 7.8%
Identity: 24%
Fold: Single transmembrane helix
Superfamily: PetL subunit of the cytochrome b6f complex
Family: PetL subunit of the cytochrome b6f complex

Phyre2
16 |
| c2e75E_ |

### PDB 2e75 chain E

Region: 10 - 26
Aligned: 17
Modelled: 17
Confidence: 7.8%
Identity: 24%
PDB header:photosynthesis
Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6;
PDBTitle: crystal structure of the cytochrome b6f complex with 2-nonyl-4-2 hydroxyquinoline n-oxide (nqno) from m.laminosus

Phyre2
17 |
| c2e76E_ |

### PDB 2e76 chain E

Region: 10 - 26
Aligned: 17
Modelled: 17
Confidence: 7.8%
Identity: 24%
PDB header:photosynthesis
Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6;
PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus

Phyre2
18 |
| c2e74E_ |

### PDB 2e74 chain E

Region: 10 - 26
Aligned: 17
Modelled: 17
Confidence: 7.8%
Identity: 24%
PDB header:photosynthesis
Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6;
PDBTitle: crystal structure of the cytochrome b6f complex from m.laminosus

Phyre2
19 |
| c1vf5R_ |

### PDB 1vf5 chain R

Region: 10 - 27
Aligned: 18
Modelled: 18
Confidence: 7.7%
Identity: 22%
PDB header:photosynthesis
Chain: R: PDB Molecule:protein pet l;
PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus

Phyre2
20 |
| c1vf5E_ |

### PDB 1vf5 chain E

Region: 10 - 27
Aligned: 18
Modelled: 18
Confidence: 7.7%
Identity: 22%
PDB header:photosynthesis
Chain: E: PDB Molecule:protein pet l;
PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus

Phyre2
21 |
22 |
23 |
24 |
25 |
26 |
27 |
28 |
29 |
30 |
31 |
32 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d2nwwa1 |
|  | 100.0 | 36 | Fold:Proton glutamate symport protein Superfamily:Proton glutamate symport protein Family:Proton glutamate symport protein
2 | d1a77a1 |
|  | 48.3 | 21 | Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain
3 | c1dpqA_ |
|  | 28.8 | 17 | PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib subunit; PDBTitle: solution structure of the constitutively active mutant of2 the integrin alpha iib cytoplasmic domain.
4 | d1mc8a1 |
|  | 28.5 | 18 | Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain
5 | d1iwga8 |
|  | 26.8 | 5 | Fold:Multidrug efflux transporter AcrB transmembrane domain Superfamily:Multidrug efflux transporter AcrB transmembrane domain Family:Multidrug efflux transporter AcrB transmembrane domain
6 | d1b43a1 |
|  | 21.4 | 18 | Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain
7 | c3ah5E_ |
|  | 18.4 | 12 | PDB header:transferase Chain: E: PDB Molecule:thymidylate synthase thyx; PDBTitle: crystal structure of flavin dependent thymidylate synthase thyx from2 helicobacter pylori complexed with fad and dump
8 | d1ul1x1 |
|  | 18.3 | 16 | Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain
9 | d1rxwa1 |
|  | 18.2 | 24 | Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain
10 | d1o26a_ |
|  | 15.7 | 16 | Fold:Thymidylate synthase-complementing protein Thy1 Superfamily:Thymidylate synthase-complementing protein Thy1 Family:Thymidylate synthase-complementing protein Thy1
11 | d1xo1a1 |
|  | 12.9 | 21 | Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain
12 | c2klzA_ |
|  | 11.3 | 36 | PDB header:hydrolase Chain: A: PDB Molecule:ataxin-3; PDBTitle: solution structure of the tandem uim domain of ataxin-3 complexed with2 ubiquitin
13 | d1fp1d1 |
|  | 8.9 | 13 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Plant O-methyltransferase, N-terminal domain
14 | c2vy8A_ |
|  | 8.6 | 11 | PDB header:transcription Chain: A: PDB Molecule:polymerase basic protein 2; PDBTitle: the 627-domain from influenza a virus polymerase pb22 subunit with glu-627
15 | d2e74e1 |
|  | 7.8 | 24 | Fold:Single transmembrane helix Superfamily:PetL subunit of the cytochrome b6f complex Family:PetL subunit of the cytochrome b6f complex
16 | c2e75E_ |
|  | 7.8 | 24 | PDB header:photosynthesis Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6; PDBTitle: crystal structure of the cytochrome b6f complex with 2-nonyl-4-2 hydroxyquinoline n-oxide (nqno) from m.laminosus
17 | c2e76E_ |
|  | 7.8 | 24 | PDB header:photosynthesis Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6; PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus
18 | c2e74E_ |
|  | 7.8 | 24 | PDB header:photosynthesis Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6; PDBTitle: crystal structure of the cytochrome b6f complex from m.laminosus
19 | c1vf5R_ |
|  | 7.7 | 22 | PDB header:photosynthesis Chain: R: PDB Molecule:protein pet l; PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus
20 | c1vf5E_ |
|  | 7.7 | 22 | PDB header:photosynthesis Chain: E: PDB Molecule:protein pet l; PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus
21 | d1iwga7 |
| not modelled | 7.5 | 8 | Fold:Multidrug efflux transporter AcrB transmembrane domain Superfamily:Multidrug efflux transporter AcrB transmembrane domain Family:Multidrug efflux transporter AcrB transmembrane domain
22 | c2c9kA_ |
| not modelled | 7.4 | 11 | PDB header:toxin Chain: A: PDB Molecule:pesticidal crystal protein cry4aa; PDBTitle: structure of the functional form of the mosquito-larvicidal2 cry4aa toxin from bacillus thuringiensis at 2.8 a3 resolution
23 | d1kyza1 |
| not modelled | 7.2 | 29 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Plant O-methyltransferase, N-terminal domain
24 | c2izoA_ |
| not modelled | 6.8 | 18 | PDB header:hydrolase Chain: A: PDB Molecule:flap structure-specific endonuclease; PDBTitle: structure of an archaeal pcna1-pcna2-fen1 complex
25 | c3h3mB_ |
| not modelled | 6.5 | 17 | PDB header:structural genomics Chain: B: PDB Molecule:flagellar protein flit; PDBTitle: crystal structure of flagellar protein flit from bordetella2 bronchiseptica
26 | d1cmwa1 |
| not modelled | 6.2 | 22 | Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain
27 | c2cfaB_ |
| not modelled | 5.7 | 19 | PDB header:transferase Chain: B: PDB Molecule:thymidylate synthase; PDBTitle: structure of viral flavin-dependant thymidylate synthase2 thyx
28 | c1rxvA_ |
| not modelled | 5.7 | 24 | PDB header:hydrolase/dna Chain: A: PDB Molecule:flap structure-specific endonuclease; PDBTitle: crystal structure of a. fulgidus fen-1 bound to dna
29 | d2z1ca1 |
| not modelled | 5.2 | 12 | Fold:OB-fold Superfamily:HupF/HypC-like Family:HupF/HypC-like
30 | c3d9sB_ |
| not modelled | 5.2 | 14 | PDB header:membrane protein Chain: B: PDB Molecule:aquaporin-5; PDBTitle: human aquaporin 5 (aqp5) - high resolution x-ray structure
31 | c2zt9E_ |
| not modelled | 5.1 | 27 | PDB header:photosynthesis Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6; PDBTitle: crystal structure of the cytochrome b6f complex from nostoc sp. pcc2 7120
32 | c2jwaA_ |
| not modelled | 5.1 | 32 | PDB header:transferase Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2; PDBTitle: erbb2 transmembrane segment dimer spatial structure

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0