BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (59 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_A4WBG9 UPF0181 protein Ent638_2380 n=8 Tax=Gammaproteob... 100 1e-20 UniRef50_B2VJ68 UPF0181 protein ETA_15280 n=4 Tax=Enterobacteria... 82 7e-15 UniRef50_C6DG29 UPF0181 protein PC1_1931 n=112 Tax=Gammaproteoba... 80 2e-14 UniRef50_Q2NTC0 UPF0181 protein SG1330 n=4 Tax=Gammaproteobacter... 79 5e-14 UniRef50_Q1C8V9 UPF0181 protein YPA_1146 n=41 Tax=Gammaproteobac... 71 1e-11 UniRef50_Q7ME78 UPF0181 protein VVA0806 n=13 Tax=Gammaproteobact... 63 3e-09 UniRef50_D0M8A3 Putative uncharacterized protein n=2 Tax=Vibrio ... 59 5e-08 UniRef50_A3N0M3 UPF0181 protein APL_0863 n=47 Tax=Gammaproteobac... 58 8e-08 UniRef50_C9Q8Y7 Putative uncharacterized protein n=5 Tax=Vibrio ... 52 4e-06 UniRef50_C0ARE1 Putative uncharacterized protein n=1 Tax=Proteus... 52 5e-06 >UniRef50_A4WBG9 UPF0181 protein Ent638_2380 n=8 Tax=Gammaproteobacteria RepID=Y2380_ENT38 Length = 61 Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 47/59 (79%), Positives = 54/59 (91%) Query: 1 MFAGLPSLTHEQQQKAVERIQELMAQGMSSGQAIALVAEELRANHSGERIVARFEDEDE 59 MFAGLPSL+HEQQQKAVERIQELM QGMSSG+AI VA+E+RA H+GERIVA F+DED+ Sbjct: 1 MFAGLPSLSHEQQQKAVERIQELMTQGMSSGEAITTVAQEIRATHTGERIVALFDDEDD 59 >UniRef50_B2VJ68 UPF0181 protein ETA_15280 n=4 Tax=Enterobacteriaceae RepID=Y1528_ERWT9 Length = 75 Score = 81.6 bits (200), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 39/59 (66%), Positives = 49/59 (83%), Gaps = 1/59 (1%) Query: 1 MFAGLPSLTHEQQQKAVERIQELMAQGMSSGQAIALVAEELRANHSGERIVARFEDEDE 59 MF GLP+L++EQQQ+AVERIQ+LMA+GMSSGQAI +VA E+R NH+G + F DEDE Sbjct: 1 MFTGLPALSYEQQQQAVERIQQLMAEGMSSGQAIGMVAAEIRENHTGGHVAVMF-DEDE 58 >UniRef50_C6DG29 UPF0181 protein PC1_1931 n=112 Tax=Gammaproteobacteria RepID=Y1931_PECCP Length = 79 Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 36/59 (61%), Positives = 48/59 (81%) Query: 1 MFAGLPSLTHEQQQKAVERIQELMAQGMSSGQAIALVAEELRANHSGERIVARFEDEDE 59 M AG+P+LTH+QQQ AVERIQELM++GMSSGQAIA VA E+R H G+ + F+++D+ Sbjct: 1 MIAGMPALTHKQQQDAVERIQELMSEGMSSGQAIAQVAAEIRQEHQGDNVAVMFDEDDD 59 >UniRef50_Q2NTC0 UPF0181 protein SG1330 n=4 Tax=Gammaproteobacteria RepID=Y1330_SODGM Length = 80 Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 38/59 (64%), Positives = 47/59 (79%) Query: 1 MFAGLPSLTHEQQQKAVERIQELMAQGMSSGQAIALVAEELRANHSGERIVARFEDEDE 59 M +P+LTHEQQQ AVERIQ LMA+GMSSG AIA VA ELRA ++GER+ R+E++ E Sbjct: 1 MLNDMPALTHEQQQLAVERIQALMAEGMSSGAAIAQVARELRAGYTGERVTLRWEEDTE 59 >UniRef50_Q1C8V9 UPF0181 protein YPA_1146 n=41 Tax=Gammaproteobacteria RepID=Y1146_YERPA Length = 85 Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 35/59 (59%), Positives = 47/59 (79%), Gaps = 1/59 (1%) Query: 1 MFAGLPSLTHEQQQKAVERIQELMAQGMSSGQAIALVAEELRANHSGE-RIVARFEDED 58 M AG+PSL+HE+QQ+AVERI + M++GMSSG+AIALVA E+R H + + +A FED D Sbjct: 1 MLAGMPSLSHEEQQEAVERIHKFMSEGMSSGEAIALVAAEIRERHQNDPQAMAIFEDHD 59 >UniRef50_Q7ME78 UPF0181 protein VVA0806 n=13 Tax=Gammaproteobacteria RepID=Y4806_VIBVY Length = 51 Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 27/48 (56%), Positives = 39/48 (81%) Query: 1 MFAGLPSLTHEQQQKAVERIQELMAQGMSSGQAIALVAEELRANHSGE 48 MF LP L+H++QQ+AVE IQ+LMA+GMS+ QAI ++AE++RA H + Sbjct: 1 MFDDLPPLSHQEQQRAVEEIQKLMAEGMSTAQAIKIIAEKIRAEHKAQ 48 >UniRef50_D0M8A3 Putative uncharacterized protein n=2 Tax=Vibrio RepID=D0M8A3_VIBSE Length = 53 Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 25/46 (54%), Positives = 39/46 (84%) Query: 1 MFAGLPSLTHEQQQKAVERIQELMAQGMSSGQAIALVAEELRANHS 46 MF LP L+H++QQ+AVE+IQELMA+G S+ +AI +VAE++R+ ++ Sbjct: 1 MFDDLPPLSHQEQQQAVEKIQELMAKGTSTAEAIKIVAEQIRSEYA 46 >UniRef50_A3N0M3 UPF0181 protein APL_0863 n=47 Tax=Gammaproteobacteria RepID=Y863_ACTP2 Length = 54 Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 30/45 (66%), Positives = 35/45 (77%) Query: 1 MFAGLPSLTHEQQQKAVERIQELMAQGMSSGQAIALVAEELRANH 45 M L SLTHEQQQ AVE+IQELMAQG+SSG+AI ++A LR H Sbjct: 1 MDNALLSLTHEQQQAAVEQIQELMAQGVSSGEAIQIIANRLREAH 45 >UniRef50_C9Q8Y7 Putative uncharacterized protein n=5 Tax=Vibrio RepID=C9Q8Y7_9VIBR Length = 54 Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 22/42 (52%), Positives = 35/42 (83%) Query: 1 MFAGLPSLTHEQQQKAVERIQELMAQGMSSGQAIALVAEELR 42 MF LP+LTH +QQ AVE+IQ+LM +G+S+ +AI ++A+++R Sbjct: 1 MFDDLPTLTHAEQQAAVEQIQKLMTEGVSTAEAIKIIAQKIR 42 >UniRef50_C0ARE1 Putative uncharacterized protein n=1 Tax=Proteus penneri ATCC 35198 RepID=C0ARE1_9ENTR Length = 51 Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 27/47 (57%), Positives = 37/47 (78%), Gaps = 1/47 (2%) Query: 14 QKAVERIQELMAQGMSSGQAIALVAEELRANHSG-ERIVARFEDEDE 59 +KAVE+IQ LMA+GMSSG+AI LVA+ELR H+ E + F++E+E Sbjct: 5 KKAVEKIQSLMAEGMSSGEAIQLVAQELREKHTTRESVSIVFDEENE 51 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q2NTC0 UPF0181 protein SG1330 n=4 Tax=Gammaproteobacter... 76 5e-13 UniRef50_B2VJ68 UPF0181 protein ETA_15280 n=4 Tax=Enterobacteria... 75 6e-13 UniRef50_A4WBG9 UPF0181 protein Ent638_2380 n=8 Tax=Gammaproteob... 72 5e-12 UniRef50_Q1C8V9 UPF0181 protein YPA_1146 n=41 Tax=Gammaproteobac... 67 2e-10 UniRef50_C6DG29 UPF0181 protein PC1_1931 n=112 Tax=Gammaproteoba... 65 5e-10 UniRef50_Q7ME78 UPF0181 protein VVA0806 n=13 Tax=Gammaproteobact... 54 2e-06 UniRef50_A3N0M3 UPF0181 protein APL_0863 n=47 Tax=Gammaproteobac... 50 2e-05 UniRef50_C9Q8Y7 Putative uncharacterized protein n=5 Tax=Vibrio ... 50 2e-05 UniRef50_D0M8A3 Putative uncharacterized protein n=2 Tax=Vibrio ... 48 1e-04 UniRef50_C0ARE1 Putative uncharacterized protein n=1 Tax=Proteus... 46 4e-04 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_Q2NTC0 UPF0181 protein SG1330 n=4 Tax=Gammaproteobacteria RepID=Y1330_SODGM Length = 80 Score = 75.5 bits (184), Expect = 5e-13, Method: Composition-based stats. Identities = 38/59 (64%), Positives = 47/59 (79%) Query: 1 MFAGLPSLTHEQQQKAVERIQELMAQGMSSGQAIALVAEELRANHSGERIVARFEDEDE 59 M +P+LTHEQQQ AVERIQ LMA+GMSSG AIA VA ELRA ++GER+ R+E++ E Sbjct: 1 MLNDMPALTHEQQQLAVERIQALMAEGMSSGAAIAQVARELRAGYTGERVTLRWEEDTE 59 >UniRef50_B2VJ68 UPF0181 protein ETA_15280 n=4 Tax=Enterobacteriaceae RepID=Y1528_ERWT9 Length = 75 Score = 75.1 bits (183), Expect = 6e-13, Method: Composition-based stats. Identities = 36/59 (61%), Positives = 50/59 (84%) Query: 1 MFAGLPSLTHEQQQKAVERIQELMAQGMSSGQAIALVAEELRANHSGERIVARFEDEDE 59 MF GLP+L++EQQQ+AVERIQ+LMA+GMSSGQAI +VA E+R NH+G + F++++E Sbjct: 1 MFTGLPALSYEQQQQAVERIQQLMAEGMSSGQAIGMVAAEIRENHTGGHVAVMFDEDEE 59 >UniRef50_A4WBG9 UPF0181 protein Ent638_2380 n=8 Tax=Gammaproteobacteria RepID=Y2380_ENT38 Length = 61 Score = 72.0 bits (175), Expect = 5e-12, Method: Composition-based stats. Identities = 47/59 (79%), Positives = 54/59 (91%) Query: 1 MFAGLPSLTHEQQQKAVERIQELMAQGMSSGQAIALVAEELRANHSGERIVARFEDEDE 59 MFAGLPSL+HEQQQKAVERIQELM QGMSSG+AI VA+E+RA H+GERIVA F+DED+ Sbjct: 1 MFAGLPSLSHEQQQKAVERIQELMTQGMSSGEAITTVAQEIRATHTGERIVALFDDEDD 59 >UniRef50_Q1C8V9 UPF0181 protein YPA_1146 n=41 Tax=Gammaproteobacteria RepID=Y1146_YERPA Length = 85 Score = 67.0 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 35/59 (59%), Positives = 47/59 (79%), Gaps = 1/59 (1%) Query: 1 MFAGLPSLTHEQQQKAVERIQELMAQGMSSGQAIALVAEELRANHSGE-RIVARFEDED 58 M AG+PSL+HE+QQ+AVERI + M++GMSSG+AIALVA E+R H + + +A FED D Sbjct: 1 MLAGMPSLSHEEQQEAVERIHKFMSEGMSSGEAIALVAAEIRERHQNDPQAMAIFEDHD 59 >UniRef50_C6DG29 UPF0181 protein PC1_1931 n=112 Tax=Gammaproteobacteria RepID=Y1931_PECCP Length = 79 Score = 65.5 bits (158), Expect = 5e-10, Method: Composition-based stats. Identities = 36/59 (61%), Positives = 48/59 (81%) Query: 1 MFAGLPSLTHEQQQKAVERIQELMAQGMSSGQAIALVAEELRANHSGERIVARFEDEDE 59 M AG+P+LTH+QQQ AVERIQELM++GMSSGQAIA VA E+R H G+ + F+++D+ Sbjct: 1 MIAGMPALTHKQQQDAVERIQELMSEGMSSGQAIAQVAAEIRQEHQGDNVAVMFDEDDD 59 >UniRef50_Q7ME78 UPF0181 protein VVA0806 n=13 Tax=Gammaproteobacteria RepID=Y4806_VIBVY Length = 51 Score = 53.5 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 27/50 (54%), Positives = 39/50 (78%) Query: 1 MFAGLPSLTHEQQQKAVERIQELMAQGMSSGQAIALVAEELRANHSGERI 50 MF LP L+H++QQ+AVE IQ+LMA+GMS+ QAI ++AE++RA H + Sbjct: 1 MFDDLPPLSHQEQQRAVEEIQKLMAEGMSTAQAIKIIAEKIRAEHKAQSA 50 >UniRef50_A3N0M3 UPF0181 protein APL_0863 n=47 Tax=Gammaproteobacteria RepID=Y863_ACTP2 Length = 54 Score = 50.1 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 30/48 (62%), Positives = 35/48 (72%) Query: 1 MFAGLPSLTHEQQQKAVERIQELMAQGMSSGQAIALVAEELRANHSGE 48 M L SLTHEQQQ AVE+IQELMAQG+SSG+AI ++A LR H Sbjct: 1 MDNALLSLTHEQQQAAVEQIQELMAQGVSSGEAIQIIANRLREAHQNN 48 >UniRef50_C9Q8Y7 Putative uncharacterized protein n=5 Tax=Vibrio RepID=C9Q8Y7_9VIBR Length = 54 Score = 49.7 bits (117), Expect = 2e-05, Method: Composition-based stats. Identities = 22/49 (44%), Positives = 38/49 (77%) Query: 1 MFAGLPSLTHEQQQKAVERIQELMAQGMSSGQAIALVAEELRANHSGER 49 MF LP+LTH +QQ AVE+IQ+LM +G+S+ +AI ++A+++R + ++ Sbjct: 1 MFDDLPTLTHAEQQAAVEQIQKLMTEGVSTAEAIKIIAQKIRQEKAKQQ 49 >UniRef50_D0M8A3 Putative uncharacterized protein n=2 Tax=Vibrio RepID=D0M8A3_VIBSE Length = 53 Score = 47.8 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 25/49 (51%), Positives = 41/49 (83%) Query: 1 MFAGLPSLTHEQQQKAVERIQELMAQGMSSGQAIALVAEELRANHSGER 49 MF LP L+H++QQ+AVE+IQELMA+G S+ +AI +VAE++R+ ++ ++ Sbjct: 1 MFDDLPPLSHQEQQQAVEKIQELMAKGTSTAEAIKIVAEQIRSEYAEKQ 49 >UniRef50_C0ARE1 Putative uncharacterized protein n=1 Tax=Proteus penneri ATCC 35198 RepID=C0ARE1_9ENTR Length = 51 Score = 45.8 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 27/50 (54%), Positives = 38/50 (76%), Gaps = 1/50 (2%) Query: 11 EQQQKAVERIQELMAQGMSSGQAIALVAEELRANHSG-ERIVARFEDEDE 59 + +KAVE+IQ LMA+GMSSG+AI LVA+ELR H+ E + F++E+E Sbjct: 2 KSSKKAVEKIQSLMAEGMSSGEAIQLVAQELREKHTTRESVSIVFDEENE 51 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.303 0.132 0.326 Lambda K H 0.267 0.0407 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 192,632,598 Number of Sequences: 3077464 Number of extensions: 4809628 Number of successful extensions: 19828 Number of sequences better than 1.0e-01: 11 Number of HSP's better than 0.1 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 19806 Number of HSP's gapped (non-prelim): 22 length of query: 59 length of database: 1,040,396,356 effective HSP length: 32 effective length of query: 27 effective length of database: 941,917,508 effective search space: 25431772716 effective search space used: 25431772716 T: 11 A: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.3 bits) S2: 87 (38.1 bits)