Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	P	D	Q	T	Q	Q	F	S	F	K	V	L	T	I	N	I	H	K	G	F	T	A	F	N	R	R	F	I	L	P	E	L	R	D	A	V	R	T	V	S	A	D	I	V	C	L	Q	E	V	M	G	A	H	E	V	H	P	L	H
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?																?	?	?																												?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	E	N	W	P	D	T	S	H	Y	E	F	L	A	D	T	M	W	S	D	F	A	Y	G	R	N	A	V	Y	P	E	G	H	H	G	N	A	V	L	S	R	Y	P	I	E	H	Y	E	N	R	D	V	S	V	D	G	A	E	K	R
Secondary structure
SS confidence
Disorder		?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		G	V	L	Y	C	R	I	V	P	P	M	T	G	K	A	I	H	V	M	C	V	H	L	G	L	R	E	A	H	R	Q	A	Q	L	A	M	L	A	E	W	V	N	E	L	P	D	G	E	P	V	L	V	A	G	D	F	N	D	W	R
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		Q	K	A	N	H	P	L	K	V	Q	A	G	L	D	E	I	F	T	R	A	H	G	R	P	A	R	T	F	P	V	Q	F	P	L	L	R	L	D	R	I	Y	V	K	N	A	S	A	S	A	P	T	A	L	P	L	R	T	W	R	H
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.
Sequence		L	S	D	H	A	P	L	S	A	E	I	H	L
Secondary structure
SS confidence
Disorder														?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3teb chain A Region: 10 - 252 Aligned: 242 Modelled: 242 Confidence: 100.0% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:endonuclease/exonuclease/phosphatase; PDBTitle: endonuclease/exonuclease/phosphatase family protein from leptotrichia2 buccalis c-1013-b Phyre2 PDB 3ngo chain A Region: 2 - 253 Aligned: 248 Modelled: 252 Confidence: 100.0% Identity: 16% PDB header:hydrolase/dna Chain: A: PDB Molecule:ccr4-not transcription complex subunit 6-like; PDBTitle: crystal structure of the human cnot6l nuclease domain in complex with2 poly(a) dna Phyre2 PDB 3g6s chain A Region: 7 - 253 Aligned: 244 Modelled: 247 Confidence: 100.0% Identity: 16% PDB header:hydrolase Chain: A: PDB Molecule:putative endonuclease/exonuclease/phosphatase PDBTitle: crystal structure of the2 endonuclease/exonuclease/phosphatase (bvu_0621) from3 bacteroides vulgatus. northeast structural genomics4 consortium target bvr56d Phyre2 PDB 3mpr chain B Region: 6 - 253 Aligned: 244 Modelled: 248 Confidence: 100.0% Identity: 20% PDB header:hydrolase Chain: B: PDB Molecule:putative endonuclease/exonuclease/phosphatase family PDBTitle: crystal structure of endonuclease/exonuclease/phosphatase family2 protein from bacteroides thetaiotaomicron, northeast structural3 genomics consortium target btr318a Phyre2 PDB 2j63 chain B Region: 6 - 253 Aligned: 235 Modelled: 248 Confidence: 100.0% Identity: 20% PDB header:lyase Chain: B: PDB Molecule:ap-endonuclease; PDBTitle: crystal structure of ap endonuclease lmap from leishmania2 major Phyre2 PDB 3l1w chain E Region: 11 - 253 Aligned: 238 Modelled: 243 Confidence: 100.0% Identity: 21% PDB header:structural genomics, unknown function Chain: E: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of a functionally unknown conserved2 protein from enterococcus faecalis v583 Phyre2 PDB 2ddr chain A domain 1 Region: 8 - 253 Aligned: 246 Modelled: 246 Confidence: 100.0% Identity: 19% Fold: DNase I-like Superfamily: DNase I-like Family: Sphingomyelin phosphodiesterase-like Phyre2 PDB 1e9n chain B Region: 2 - 253 Aligned: 233 Modelled: 238 Confidence: 100.0% Identity: 21% PDB header:dna repair Chain: B: PDB Molecule:dna-(apurinic or apyrimidinic site) lyase; PDBTitle: a second divalent metal ion in the active site of a new2 crystal form of human apurinic/apyrimidinic endonuclease,3 ape1, and its implications for the catalytic mechanism Phyre2 PDB 1sr4 chain B Region: 6 - 252 Aligned: 237 Modelled: 243 Confidence: 100.0% Identity: 17% Fold: DNase I-like Superfamily: DNase I-like Family: DNase I-like Phyre2 PDB 1zwx chain A domain 1 Region: 7 - 251 Aligned: 242 Modelled: 241 Confidence: 100.0% Identity: 19% Fold: DNase I-like Superfamily: DNase I-like Family: Sphingomyelin phosphodiesterase-like Phyre2 PDB 1ako chain A Region: 10 - 252 Aligned: 221 Modelled: 227 Confidence: 100.0% Identity: 21% Fold: DNase I-like Superfamily: DNase I-like Family: DNase I-like Phyre2 PDB 2jc5 chain A Region: 10 - 253 Aligned: 225 Modelled: 230 Confidence: 100.0% Identity: 16% PDB header:hydrolase Chain: A: PDB Molecule:exodeoxyribonuclease; PDBTitle: apurinic apyrimidinic (ap) endonuclease (nape) from2 neisseria meningitidis Phyre2 PDB 3i46 chain B Region: 9 - 252 Aligned: 244 Modelled: 244 Confidence: 100.0% Identity: 16% PDB header:toxin Chain: B: PDB Molecule:beta-hemolysin; PDBTitle: crystal structure of beta toxin from staphylococcus aureus f277a,2 p278a mutant with bound calcium ions Phyre2 PDB 2voa chain B Region: 10 - 253 Aligned: 222 Modelled: 228 Confidence: 100.0% Identity: 19% PDB header:lyase Chain: B: PDB Molecule:exodeoxyribonuclease iii; PDBTitle: structure of an ap endonuclease from archaeoglobus fulgidus Phyre2 PDB 3g0r chain A Region: 10 - 253 Aligned: 225 Modelled: 230 Confidence: 100.0% Identity: 20% PDB header:hydrolase/dna Chain: A: PDB Molecule:exodeoxyribonuclease; PDBTitle: complex of mth0212 and an 8bp dsdna with distorted ends Phyre2 PDB 1vyb chain A Region: 5 - 252 Aligned: 219 Modelled: 225 Confidence: 99.9% Identity: 16% Fold: DNase I-like Superfamily: DNase I-like Family: DNase I-like Phyre2 PDB 2f1n chain A domain 1 Region: 8 - 250 Aligned: 234 Modelled: 243 Confidence: 99.9% Identity: 16% Fold: DNase I-like Superfamily: DNase I-like Family: DNase I-like Phyre2 PDB 1hd7 chain A Region: 3 - 253 Aligned: 218 Modelled: 223 Confidence: 99.9% Identity: 19% Fold: DNase I-like Superfamily: DNase I-like Family: DNase I-like Phyre2 PDB 2jc4 chain A Region: 10 - 252 Aligned: 221 Modelled: 227 Confidence: 99.9% Identity: 23% PDB header:hydrolase Chain: A: PDB Molecule:exodeoxyribonuclease iii; PDBTitle: 3'-5' exonuclease (nexo) from neisseria meningitidis Phyre2 PDB 2a40 chain B domain 1 Region: 10 - 252 Aligned: 236 Modelled: 243 Confidence: 99.9% Identity: 15% Fold: DNase I-like Superfamily: DNase I-like Family: DNase I-like Phyre2 1 c3tebA_ 2 c3ngoA_ 3 c3g6sA_ 4 c3mprB_ 5 c2j63B_ 6 c3l1wE_ 7 d2ddra1 8 c1e9nB_ 9 d1sr4b_ 10 d1zwxa1 11 d1akoa_ 12 c2jc5A_ 13 c3i46B_ 14 c2voaB_ 15 c3g0rA_ 16 d1vyba_ 17 d2f1na1 18 d1hd7a_ 19 c2jc4A_ 20 d2a40b1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3tebA_ 100.0 17 PDB header:hydrolase Chain: A: PDB Molecule:endonuclease/exonuclease/phosphatase; PDBTitle: endonuclease/exonuclease/phosphatase family protein from leptotrichia2 buccalis c-1013-b 2 c3ngoA_ 100.0 16 PDB header:hydrolase/dna Chain: A: PDB Molecule:ccr4-not transcription complex subunit 6-like; PDBTitle: crystal structure of the human cnot6l nuclease domain in complex with2 poly(a) dna 3 c3g6sA_ 100.0 16 PDB header:hydrolase Chain: A: PDB Molecule:putative endonuclease/exonuclease/phosphatase PDBTitle: crystal structure of the2 endonuclease/exonuclease/phosphatase (bvu_0621) from3 bacteroides vulgatus. northeast structural genomics4 consortium target bvr56d 4 c3mprB_ 100.0 20 PDB header:hydrolase Chain: B: PDB Molecule:putative endonuclease/exonuclease/phosphatase family PDBTitle: crystal structure of endonuclease/exonuclease/phosphatase family2 protein from bacteroides thetaiotaomicron, northeast structural3 genomics consortium target btr318a 5 c2j63B_ 100.0 20 PDB header:lyase Chain: B: PDB Molecule:ap-endonuclease; PDBTitle: crystal structure of ap endonuclease lmap from leishmania2 major 6 c3l1wE_ 100.0 21 PDB header:structural genomics, unknown function Chain: E: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of a functionally unknown conserved2 protein from enterococcus faecalis v583 7 d2ddra1 100.0 19 Fold:DNase I-like Superfamily:DNase I-like Family:Sphingomyelin phosphodiesterase-like 8 c1e9nB_ 100.0 21 PDB header:dna repair Chain: B: PDB Molecule:dna-(apurinic or apyrimidinic site) lyase; PDBTitle: a second divalent metal ion in the active site of a new2 crystal form of human apurinic/apyrimidinic endonuclease,3 ape1, and its implications for the catalytic mechanism 9 d1sr4b_ 100.0 17 Fold:DNase I-like Superfamily:DNase I-like Family:DNase I-like 10 d1zwxa1 100.0 19 Fold:DNase I-like Superfamily:DNase I-like Family:Sphingomyelin phosphodiesterase-like 11 d1akoa_ 100.0 21 Fold:DNase I-like Superfamily:DNase I-like Family:DNase I-like 12 c2jc5A_ 100.0 16 PDB header:hydrolase Chain: A: PDB Molecule:exodeoxyribonuclease; PDBTitle: apurinic apyrimidinic (ap) endonuclease (nape) from2 neisseria meningitidis 13 c3i46B_ 100.0 16 PDB header:toxin Chain: B: PDB Molecule:beta-hemolysin; PDBTitle: crystal structure of beta toxin from staphylococcus aureus f277a,2 p278a mutant with bound calcium ions 14 c2voaB_ 100.0 19 PDB header:lyase Chain: B: PDB Molecule:exodeoxyribonuclease iii; PDBTitle: structure of an ap endonuclease from archaeoglobus fulgidus 15 c3g0rA_ 100.0 20 PDB header:hydrolase/dna Chain: A: PDB Molecule:exodeoxyribonuclease; PDBTitle: complex of mth0212 and an 8bp dsdna with distorted ends 16 d1vyba_ 99.9 16 Fold:DNase I-like Superfamily:DNase I-like Family:DNase I-like 17 d2f1na1 99.9 16 Fold:DNase I-like Superfamily:DNase I-like Family:DNase I-like 18 d1hd7a_ 99.9 19 Fold:DNase I-like Superfamily:DNase I-like Family:DNase I-like 19 c2jc4A_ 99.9 23 PDB header:hydrolase Chain: A: PDB Molecule:exodeoxyribonuclease iii; PDBTitle: 3'-5' exonuclease (nexo) from neisseria meningitidis 20 d2a40b1 99.9 15 Fold:DNase I-like Superfamily:DNase I-like Family:DNase I-like 21 d1wdua_ not modelled 99.9 13 Fold:DNase I-like Superfamily:DNase I-like Family:DNase I-like 22 d2imqx1 not modelled 99.9 16 Fold:DNase I-like Superfamily:DNase I-like Family:Inositol polyphosphate 5-phosphatase (IPP5) 23 c2ei9A_ not modelled 99.9 15 PDB header:gene regulation Chain: A: PDB Molecule:non-ltr retrotransposon r1bmks orf2 protein; PDBTitle: crystal structure of r1bm endonuclease domain 24 c3mtcA_ not modelled 99.9 18 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:type ii inositol-1,4,5-trisphosphate 5-phosphatase; PDBTitle: crystal structure of inpp5b in complex with phosphatidylinositol 4-2 phosphate 25 c3nr8A_ not modelled 99.9 17 PDB header:hydrolase Chain: A: PDB Molecule:phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase 2; PDBTitle: crystal structure of human ship2 26 c2xswB_ not modelled 99.7 13 PDB header:hydrolase Chain: B: PDB Molecule:72 kda inositol polyphosphate 5-phosphatase; PDBTitle: crystal structure of human inpp5e 27 d1i9za_ not modelled 99.6 14 Fold:DNase I-like Superfamily:DNase I-like Family:Inositol polyphosphate 5-phosphatase (IPP5) 28 d1emsa2 not modelled 83.9 7 Fold:Carbon-nitrogen hydrolase Superfamily:Carbon-nitrogen hydrolase Family:Nitrilase 29 c2w1vA_ not modelled 61.9 19 PDB header:hydrolase Chain: A: PDB Molecule:nitrilase homolog 2; PDBTitle: crystal structure of mouse nitrilase-2 at 1.4a resolution 30 c2vhiG_ not modelled 61.7 20 PDB header:hydrolase Chain: G: PDB Molecule:cg3027-pa; PDBTitle: crystal structure of a pyrimidine degrading enzyme from2 drosophila melanogaster 31 d1f89a_ not modelled 60.7 14 Fold:Carbon-nitrogen hydrolase Superfamily:Carbon-nitrogen hydrolase Family:Nitrilase 32 c3hkxA_ not modelled 53.4 14 PDB header:hydrolase Chain: A: PDB Molecule:amidase; PDBTitle: crystal structure analysis of an amidase from nesterenkonia sp. 33 c2plqA_ not modelled 47.0 15 PDB header:hydrolase Chain: A: PDB Molecule:aliphatic amidase; PDBTitle: crystal structure of the amidase from geobacillus pallidus rapc8 34 c1emsB_ not modelled 45.2 7 PDB header:antitumor protein Chain: B: PDB Molecule:nit-fragile histidine triad fusion protein; PDBTitle: crystal structure of the c. elegans nitfhit protein 35 c3ilvA_ not modelled 31.7 17 PDB header:ligase Chain: A: PDB Molecule:glutamine-dependent nad(+) synthetase; PDBTitle: crystal structure of a glutamine-dependent nad(+) synthetase2 from cytophaga hutchinsonii 36 c2e2kC_ not modelled 29.2 5 PDB header:hydrolase Chain: C: PDB Molecule:formamidase; PDBTitle: helicobacter pylori formamidase amif contains a fine-tuned cysteine-2 glutamate-lysine catalytic triad 37 c3n05B_ not modelled 26.6 18 PDB header:ligase Chain: B: PDB Molecule:nh(3)-dependent nad(+) synthetase; PDBTitle: crystal structure of nh3-dependent nad+ synthetase from streptomyces2 avermitilis 38 d1uf5a_ not modelled 22.8 14 Fold:Carbon-nitrogen hydrolase Superfamily:Carbon-nitrogen hydrolase Family:Carbamilase 39 d3bula2 not modelled 20.4 21 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 40 c2e11B_ not modelled 16.1 10 PDB header:hydrolase Chain: B: PDB Molecule:hydrolase; PDBTitle: the crystal structure of xc1258 from xanthomonas campestris: a cn-2 hydrolase superfamily protein with an arsenic adduct in the active3 site 41 d1xrsb1 not modelled 14.3 11 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 42 c1chmA_ not modelled 13.6 12 PDB header:creatinase Chain: A: PDB Molecule:creatine amidinohydrolase; PDBTitle: enzymatic mechanism of creatine amidinohydrolase as deduced2 from crystal structures 43 c1y80A_ not modelled 12.9 28 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:predicted cobalamin binding protein; PDBTitle: structure of a corrinoid (factor iiim)-binding protein from2 moorella thermoacetica 44 c1xrsB_ not modelled 12.3 11 PDB header:isomerase Chain: B: PDB Molecule:d-lysine 5,6-aminomutase beta subunit; PDBTitle: crystal structure of lysine 5,6-aminomutase in complex with plp,2 cobalamin, and 5'-deoxyadenosine 45 c3t1iC_ not modelled 10.4 17 PDB header:hydrolase Chain: C: PDB Molecule:double-strand break repair protein mre11a; PDBTitle: crystal structure of human mre11: understanding tumorigenic mutations 46 c3jvvA_ not modelled 10.4 11 PDB header:atp binding protein Chain: A: PDB Molecule:twitching mobility protein; PDBTitle: crystal structure of p. aeruginosa pilt with bound amp-pcp 47 d7reqa2 not modelled 10.1 11 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 48 d1edqa1 not modelled 9.8 20 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 49 d1ccwa_ not modelled 9.3 16 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 50 d1j31a_ not modelled 9.2 18 Fold:Carbon-nitrogen hydrolase Superfamily:Carbon-nitrogen hydrolase Family:Carbamilase 51 c1bmtB_ not modelled 8.5 21 PDB header:methyltransferase Chain: B: PDB Molecule:methionine synthase; PDBTitle: how a protein binds b12: a 3.o angstrom x-ray structure of2 the b12-binding domains of methionine synthase 52 c2yxbA_ not modelled 8.4 11 PDB header:isomerase Chain: A: PDB Molecule:coenzyme b12-dependent mutase; PDBTitle: crystal structure of the methylmalonyl-coa mutase alpha-subunit from2 aeropyrum pernix 53 c3nrbD_ not modelled 8.2 24 PDB header:hydrolase Chain: D: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (puru,2 pp_1943) from pseudomonas putida kt2440 at 2.05 a resolution 54 c1k98A_ not modelled 8.2 21 PDB header:transferase Chain: A: PDB Molecule:methionine synthase; PDBTitle: adomet complex of meth c-terminal fragment 55 c3menC_ not modelled 8.1 14 PDB header:hydrolase Chain: C: PDB Molecule:acetylpolyamine aminohydrolase; PDBTitle: crystal structure of acetylpolyamine aminohydrolase from burkholderia2 pseudomallei, iodide soak 56 c2eyuA_ not modelled 7.3 11 PDB header:protein transport Chain: A: PDB Molecule:twitching motility protein pilt; PDBTitle: the crystal structure of the c-terminal domain of aquifex2 aeolicus pilt 57 c3n0vD_ not modelled 7.1 18 PDB header:hydrolase Chain: D: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pp_0327)2 from pseudomonas putida kt2440 at 2.25 a resolution 58 c2qlvB_ not modelled 7.0 39 PDB header:transferase/protein binding Chain: B: PDB Molecule:protein sip2; PDBTitle: crystal structure of the heterotrimer core of the s.2 cerevisiae ampk homolog snf1 59 c3ezxA_ not modelled 6.8 11 PDB header:transferase Chain: A: PDB Molecule:monomethylamine corrinoid protein 1; PDBTitle: structure of methanosarcina barkeri monomethylamine2 corrinoid protein 60 c3obiC_ not modelled 6.6 18 PDB header:hydrolase Chain: C: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (np_949368)2 from rhodopseudomonas palustris cga009 at 1.95 a resolution 61 c3o1lB_ not modelled 6.6 35 PDB header:hydrolase Chain: B: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pspto_4314)2 from pseudomonas syringae pv. tomato str. dc3000 at 2.20 a resolution 62 d3bzka5 not modelled 6.5 6 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Tex RuvX-like domain-like 63 c3louB_ not modelled 6.5 29 PDB header:hydrolase Chain: B: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of formyltetrahydrofolate deformylase (yp_105254.1)2 from burkholderia mallei atcc 23344 at 1.90 a resolution 64 d2qlvb1 not modelled 6.5 39 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:AMPK-beta glycogen binding domain-like 65 d1g6oa_ not modelled 6.5 10 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 66 c3p9xB_ not modelled 6.4 13 PDB header:transferase Chain: B: PDB Molecule:phosphoribosylglycinamide formyltransferase; PDBTitle: crystal structure of phosphoribosylglycinamide formyltransferase from2 bacillus halodurans 67 c2i2xD_ not modelled 6.3 17 PDB header:transferase Chain: D: PDB Molecule:methyltransferase 1; PDBTitle: crystal structure of methanol:cobalamin methyltransferase complex2 mtabc from methanosarcina barkeri 68 d1p9ra_ not modelled 6.1 11 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 69 d2eg6a1 not modelled 5.6 50 Fold:TIM beta/alpha-barrel Superfamily:Metallo-dependent hydrolases Family:Dihydroorotase 70 d1fmfa_ not modelled 5.5 22 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 71 c3pn9C_ not modelled 5.4 10 PDB header:hydrolase Chain: C: PDB Molecule:proline dipeptidase; PDBTitle: crystal structure of a proline dipeptidase from streptococcus2 pneumoniae tigr4 72 d1hjra_ not modelled 5.2 13 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:RuvC resolvase 73 c3o5vA_ not modelled 5.2 14 PDB header:hydrolase Chain: A: PDB Molecule:x-pro dipeptidase; PDBTitle: the crystal structure of the creatinase/prolidase n-terminal domain of2 an x-pro dipeptidase from streptococcus pyogenes to 1.85a 74 d1z0na1 not modelled 5.2 40 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:AMPK-beta glycogen binding domain-like 75 d1q8ia1 not modelled 5.1 18 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 76 c3i7mA_ not modelled 5.1 15 PDB header:hydrolase Chain: A: PDB Molecule:xaa-pro dipeptidase; PDBTitle: n-terminal domain of xaa-pro dipeptidase from lactobacillus brevis.

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0