15/01/2012 20:01:18 : INFO  : Run start: Sun Jan 15 20:01:18 GMT 2012
15/01/2012 20:01:18 : INFO  : Initialised job
15/01/2012 20:01:18 : INFO  : Renaming log file 'phyre2_20120115_200118.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/6b9d16282375025e/phyre_20120115_200118.log'
15/01/2012 20:01:18 : INFO  : Initialised job:
Sequence
>batch____
MLNSFKLSLQYILPKLWLTRLAGWGASKRAGWLTKLVIDLFVKYYKVDMKEAQKPDTASY
RTFNEFFVRPLRDEVRPIDTDPNVLVMPADGVISQLGKIEEDKILQAKGHNYSLEALLAG
NYLMADLFRNGTFVTTYLSPRDYHRVHMPCNGILREMIYVPGDLFSVNHLTAQNVPNLFA
RNERVICLFDTEFGPMAQILVGATIVGSIETVWAGTITPPREGIIKRWTWPAGENDGSVA
LLKGQEMGRFKLGSTVINLFAPGKVNLVEQLESLSVTKIGQPLAVSTETFVTPDAEPAPL
PAEEIEAEHDASPLVDDKKDQV

15/01/2012 20:01:18 : INFO  : Checked sequence
15/01/2012 20:01:18 : INFO  : Finding homologues with PSI-BLAST
15/01/2012 20:01:18 : INFO  : PSI-BLAST 3 iterations
15/01/2012 20:03:03 : INFO  : PSI-BLAST 5 iterations
15/01/2012 20:04:41 : INFO  : Finished PSI-BLAST
15/01/2012 20:04:41 : INFO  : Running Buildali to generate a3m file
15/01/2012 20:10:36 : INFO  : Converting to HMM
15/01/2012 20:10:38 : INFO  : Calibrating HMM
15/01/2012 20:10:46 : INFO  : Searching HMM database
15/01/2012 20:17:06 : INFO  : Finished buildali
15/01/2012 20:17:06 : INFO  : Predicting secondary structure
15/01/2012 20:17:06 : INFO  : Predicted secondary structure (PSI-Pred)
15/01/2012 20:17:07 : INFO  : Predicting Disordered regions
15/01/2012 20:17:07 : INFO  : Predicted Disorder (Disopred)
15/01/2012 20:17:07 : INFO  : Running memsat_svm check
15/01/2012 20:22:06 : INFO  : Globular protein
15/01/2012 20:22:06 : INFO  : Predicted Transmembrane (memsat_svm) ID '6b9d16282375025e'
15/01/2012 20:22:06 : INFO  : Initialising fold library search
15/01/2012 20:22:06 : INFO  : Initialised search input
15/01/2012 20:22:06 : INFO  : Building Ensemble models
15/01/2012 20:22:06 : INFO  : Building hh.d2gpra_.model.1.pdb
15/01/2012 20:22:07 : INFO  : Building hh.d1gpra_.model.2.pdb
15/01/2012 20:22:07 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/6b9d16282375025e/hh.d1gpra_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/6b9d16282375025e/d1gpra_.2.pdb
15/01/2012 20:22:07 : INFO  : Building hh.d2f3ga_.model.3.pdb
15/01/2012 20:22:07 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/6b9d16282375025e/hh.d2f3ga_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/6b9d16282375025e/d2f3ga_.3.pdb
15/01/2012 20:22:07 : INFO  : Building hh.c2ejmA_.model.4.pdb
15/01/2012 20:22:08 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/6b9d16282375025e/hh.c2ejmA_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/6b9d16282375025e/c2ejmA_.6.pdb
15/01/2012 20:22:08 : INFO  : Building d2gpra_.1.pdb
15/01/2012 20:22:08 : INFO  : Building d1gpra_.2.pdb
15/01/2012 20:22:08 : INFO  : Building d2f3ga_.3.pdb
15/01/2012 20:22:09 : INFO  : Building d1glaf_.4.pdb
15/01/2012 20:22:09 : INFO  : Building c2dncA_.5.pdb
15/01/2012 20:22:09 : INFO  : Building c2ejmA_.6.pdb
15/01/2012 20:22:10 : INFO  : Building c2dn8A_.7.pdb
15/01/2012 20:22:10 : INFO  : Building d1bdoa_.8.pdb
15/01/2012 20:22:10 : INFO  : Building c2b8gA_.9.pdb
15/01/2012 20:22:11 : INFO  : Building d1laba_.10.pdb
15/01/2012 20:22:11 : INFO  : Building c2ejgD_.11.pdb
15/01/2012 20:22:11 : INFO  : Building d1y8ob1.12.pdb
15/01/2012 20:22:12 : INFO  : Building d1dcza_.13.pdb
15/01/2012 20:22:12 : INFO  : Building d1ghja_.14.pdb
15/01/2012 20:22:12 : INFO  : Building c2dneA_.15.pdb
15/01/2012 20:22:13 : INFO  : Building c2qikA_.16.pdb
15/01/2012 20:22:13 : INFO  : Building c2l5tA_.17.pdb
15/01/2012 20:22:13 : INFO  : Building d1qjoa_.18.pdb
15/01/2012 20:22:14 : INFO  : Building d1iyua_.19.pdb
15/01/2012 20:22:14 : INFO  : Building d1gjxa_.20.pdb
15/01/2012 20:22:17 : INFO  : Finished HH model building
15/01/2012 20:22:17 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
15/01/2012 20:22:22 : INFO  : html domain output complete ID '6b9d16282375025e'
15/01/2012 20:29:37 : INFO  : Run end  : Sun Jan 15 20:29:37 GMT 2012
