Phyre 2 alignment of P0A8K1 with d1pjwa_

Return to main results | Retrieve Phyre Job Id

Job Description | P0A8K1
Confidence | 30.20% | Date | Thu Jan 5 11:08:01 GMT 2012
Rank | 36 | Aligned Residues | 48
% Identity | 31% | Template | d1pjwa_
SCOP info | Immunoglobulin-like beta-sandwich | E set domains | Class II viral fusion proteins C-terminal domain
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 162 | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | G | D | L | F | S | V | N | H | L | T | A | Q | N | V | P | N | L | F | A | R | N | E | R | V | I | C | L | F | D | T | E | F | G | P | M | A | Q | I | L | V | G | A | T | I | V | G | S | I | E | T | V | W | A | G | T
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |
Template Sequence |  | G | R | L | V | T | V | N | P | F | V | A | T | S | S | A | . | . | . | . | . | N | S | K | V | L | V | E | M | E | P | P | F | G | D | . | S | Y | I | V | V | G | M | G | D | . | K | Q | I | N | H | H | W | H | K | A
Template Known Secondary structure |  | B |  |  | S | S | S |  | S | B |  |  | S | S | S | T | . | . | . | . | . | T | S |  |  |  |  |  |  |  |  |  | S | S |  | . |  |  |  |  |  |  |  | S | S | . | S |  |  |  |  |  |  |  | S |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 61 | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . |  |  |  |  |  | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . |  | 90 | . | . | . | . | . | . | . | . |  | . | 100 | . | . | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
Disclaimer
Terms and Conditions