08/01/2012 23:50:32 : INFO  : Run start: Sun Jan  8 23:50:30 GMT 2012
08/01/2012 23:50:40 : INFO  : Initialised job
08/01/2012 23:50:43 : INFO  : Renaming log file 'phyre2_20120108_235029.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/6b6413d4b4ecc346/phyre_20120108_235029.log'
08/01/2012 23:50:45 : INFO  : Initialised job:
Sequence
>batch____
MFRQLKKNLVATLIAAMTIGQVAPAFADSADTLPDMGTSAGSTLSIGQEMQMGDYYVRQL
RGSAPLINDPLLTQYINSLGMRLVSHANSVKTPFHFFLINNDEINAFAFFGGNVVLHSAL
FRYSDNESQLASVMAHEISHVTQRHLARAMEDQQRSAPLTWVGALGSILLAMASPQAGMA
ALTGTLAGTRQGMISFTQQNEQEADRIGIQVLQRSGFDPQAMPTFLEKLLDQARYSSRPP
EILLTHPLPESRLADARNRANQMRPMVVQSSEDFYLAKARTLGMYNSGRNQLTSDLLDEW
AKGNVRQQRAAQYGRALQAMEANKYDEARKTLQPLLAAEPGNAWYLDLATDIDLGQNKAN
EAINRLKNARDLRTNPVLQLNLANAYLQGGQPQEAANILNRYTFNNKDDSNGWDLLAQAE
AALNNRDQELAARAEGYALAGRLDQAISLLSSASSQVKLGSLQQARYDARIDQLRQLQER
FKPYTKM

08/01/2012 23:50:47 : INFO  : Checked sequence
08/01/2012 23:50:52 : INFO  : Finding homologues with PSI-BLAST
08/01/2012 23:50:54 : INFO  : PSI-BLAST 3 iterations
08/01/2012 23:53:41 : INFO  : PSI-BLAST 5 iterations
08/01/2012 23:58:46 : INFO  : Finished PSI-BLAST
08/01/2012 23:58:49 : INFO  : Running Buildali to generate a3m file
09/01/2012 01:51:22 : INFO  : Converting to HMM
09/01/2012 01:51:39 : INFO  : Calibrating HMM
09/01/2012 01:51:59 : INFO  : Searching HMM database
09/01/2012 02:00:14 : INFO  : Finished buildali
09/01/2012 02:00:16 : INFO  : Predicting secondary structure
09/01/2012 02:00:28 : INFO  : Predicted secondary structure (PSI-Pred)
09/01/2012 02:00:30 : INFO  : Predicting Disordered regions
09/01/2012 02:00:36 : INFO  : Predicted Disorder (Disopred)
09/01/2012 02:00:39 : INFO  : Running memsat_svm check
09/01/2012 02:04:01 : INFO  : Globular protein
09/01/2012 02:04:03 : INFO  : Predicted Transmembrane (memsat_svm) ID '6b6413d4b4ecc346'
09/01/2012 02:04:04 : INFO  : Initialising fold library search
09/01/2012 02:04:08 : INFO  : Initialised search input
09/01/2012 02:04:10 : INFO  : Building Ensemble models
09/01/2012 02:04:13 : INFO  : Building hh.c3c37B_.model.1.pdb
09/01/2012 02:04:33 : INFO  : Building hh.c3pe3D_.model.2.pdb
09/01/2012 02:04:48 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/6b6413d4b4ecc346/hh.c3pe3D_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/6b6413d4b4ecc346/c3pe3D_.2.pdb
09/01/2012 02:04:54 : INFO  : Building hh.c2xpiA_.model.3.pdb
09/01/2012 02:05:11 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/6b6413d4b4ecc346/hh.c2xpiA_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/6b6413d4b4ecc346/c2xpiA_.3.pdb
09/01/2012 02:05:18 : INFO  : Building hh.d1xnfa_.model.4.pdb
09/01/2012 02:05:37 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/6b6413d4b4ecc346/hh.d1xnfa_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/6b6413d4b4ecc346/d1xnfa_.4.pdb
09/01/2012 02:05:42 : INFO  : Building hh.c2y4tA_.model.5.pdb
09/01/2012 02:05:57 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/6b6413d4b4ecc346/hh.c2y4tA_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/6b6413d4b4ecc346/c2y4tA_.5.pdb
09/01/2012 02:06:03 : INFO  : Building hh.d1w3ba_.model.6.pdb
09/01/2012 02:06:20 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/6b6413d4b4ecc346/hh.d1w3ba_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/6b6413d4b4ecc346/d1w3ba_.6.pdb
09/01/2012 02:06:25 : INFO  : Building hh.c3cvpA_.model.7.pdb
09/01/2012 02:06:42 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/6b6413d4b4ecc346/hh.c3cvpA_.model.7.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/6b6413d4b4ecc346/c3cvpA_.7.pdb
09/01/2012 02:06:48 : INFO  : Building c3c37B_.1.pdb
09/01/2012 02:07:09 : INFO  : Building c3pe3D_.2.pdb
09/01/2012 02:07:29 : INFO  : Building c2xpiA_.3.pdb
09/01/2012 02:07:48 : INFO  : Building d1xnfa_.4.pdb
09/01/2012 02:08:07 : INFO  : Building c2y4tA_.5.pdb
09/01/2012 02:08:26 : INFO  : Building d1w3ba_.6.pdb
09/01/2012 02:08:45 : INFO  : Building c3cvpA_.7.pdb
09/01/2012 02:09:05 : INFO  : Building c2vq2A_.8.pdb
09/01/2012 02:09:24 : INFO  : Building c3as5A_.9.pdb
09/01/2012 02:09:45 : INFO  : Building c2r5sB_.10.pdb
09/01/2012 02:10:06 : INFO  : Building c2q7fA_.11.pdb
09/01/2012 02:10:25 : INFO  : Building c3iegB_.12.pdb
09/01/2012 02:10:44 : INFO  : Building c1fchB_.13.pdb
09/01/2012 02:11:03 : INFO  : Building c2ho1B_.14.pdb
09/01/2012 02:11:22 : INFO  : Building c3hymB_.15.pdb
09/01/2012 02:11:42 : INFO  : Building c2hyzA_.16.pdb
09/01/2012 02:12:02 : INFO  : Building c3mv3B_.17.pdb
09/01/2012 02:12:21 : INFO  : Building d2h6fa1.18.pdb
09/01/2012 02:12:41 : INFO  : Building c1tnoI_.19.pdb
09/01/2012 02:13:02 : INFO  : Building c3urzB_.20.pdb
09/01/2012 02:15:51 : INFO  : Finished HH model building
09/01/2012 02:15:53 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
09/01/2012 02:17:19 : INFO  : html domain output complete ID '6b6413d4b4ecc346'
09/01/2012 02:49:52 : INFO  : Run end  : Mon Jan  9 02:49:50 GMT 2012
