Phyre 2 alignment of P0A9H9 with c2rf4B_

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Job Description | P0A9H9
Confidence | 2.95% | Date | Thu Jan 5 11:10:17 GMT 2012
Rank | 90 | Aligned Residues | 27
% Identity | 33% | Template | c2rf4B_
PDB info | PDB header:transferase | Chain: B: PDB Molecule:dna-directed rna polymerase i subunit rpa4; | PDBTitle: crystal structure of the rna polymerase i subcomplex a14/43
Resolution | 3.10 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 186 | . | . | . | 190 | . | . | . | . |  | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | L | N | G | P | Q | V | D | T | S | . | K | A | G | V | V | A | S | Q | D | Q | V | D | D | L | L | D | S | L
Query Conservation |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | L | N | T | P | V | V | I | H | A | T | Q | L | P | Q | H | V | S | T | D | E | V | L | Q | F | L | E | S | F
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 16 | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | .

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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