Phyre 2 Results for P0A9H9

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Email | l.a.kelley@imperial.ac.uk
Description | P0A9H9
Date | Thu Jan 5 11:10:17 GMT 2012
Unique Job ID | 6b0ea107f5073597

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c1kmiZ_
Top template information
PDB header:signaling protein Chain: Z: PDB Molecule:chemotaxis protein chez; PDBTitle: crystal structure of an e.coli chemotaxis protein, chez
Confidence and coverage
Confidence: | 100.0% | Coverage: | 83%
177 residues ( 83% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

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Sequence |  | M | M | Q | P | S | I | K | P | A | D | E | H | S | A | G | D | I | I | A | R | I | G | S | L | T | R | M | L | R | D | S | L | R | E | L | G | L | D | Q | A | I | A | E | A | A | E | A | I | P | D | A | R | D | R | L | Y | Y | V | V | Q
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SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? |  | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | M | T | A | Q | A | A | E | R | A | L | N | S | V | E | A | S | Q | P | H | Q | D | Q | M | E | K | S | A | K | A | L | T | Q | R | W | D | D | W | F | A | D | P | I | D | L | A | D | A | R | E | L | V | T | D | T | R | Q | F | L | A | D
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | V | P | A | H | T | S | F | T | N | A | Q | L | L | E | I | M | M | A | Q | D | F | Q | D | L | T | G | Q | V | I | K | R | M | M | D | V | I | Q | E | I | E | R | Q | L | L | M | V | L | L | E | N | I | P | E | Q | E | S | R | P | K | R
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | .
Sequence |  | E | N | Q | S | L | L | N | G | P | Q | V | D | T | S | K | A | G | V | V | A | S | Q | D | Q | V | D | D | L | L | D | S | L | G | F
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c1kmiZ_ |

### PDB 1kmi chain Z

Region: 5 - 213
Aligned: 177
Modelled: 177
Confidence: 100.0%
Identity: 100%
PDB header:signaling protein
Chain: Z: PDB Molecule:chemotaxis protein chez;
PDBTitle: crystal structure of an e.coli chemotaxis protein, chez

Phyre2
2 |
| c2pl9D_ |

### PDB 2pl9 chain D

Region: 196 - 214
Aligned: 19
Modelled: 19
Confidence: 97.1%
Identity: 100%
PDB header:signaling protien
Chain: D: PDB Molecule:chemotaxis protein chez;
PDBTitle: crystal structure of chey-mg(2+)-bef(3)(-) in complex with chez(c19)2 peptide solved from a p2(1)2(1)2 crystal

Phyre2
3 |
| c2pl9E_ |

### PDB 2pl9 chain E

Region: 200 - 214
Aligned: 15
Modelled: 15
Confidence: 95.9%
Identity: 100%
PDB header:signaling protien
Chain: E: PDB Molecule:chemotaxis protein chez;
PDBTitle: crystal structure of chey-mg(2+)-bef(3)(-) in complex with chez(c19)2 peptide solved from a p2(1)2(1)2 crystal

Phyre2
4 |
| c2pl9F_ |

### PDB 2pl9 chain F

Region: 200 - 214
Aligned: 15
Modelled: 15
Confidence: 95.9%
Identity: 100%
PDB header:signaling protien
Chain: F: PDB Molecule:chemotaxis protein chez;
PDBTitle: crystal structure of chey-mg(2+)-bef(3)(-) in complex with chez(c19)2 peptide solved from a p2(1)2(1)2 crystal

Phyre2
5 |
| c2damA_ |

### PDB 2dam chain A

Region: 139 - 146
Aligned: 8
Modelled: 8
Confidence: 43.1%
Identity: 75%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:etea protein;
PDBTitle: solution structure of the novel identified uba-like domain2 in the n-terminal of human etea protein

Phyre2
6 |
| c1zvzA_ |

### PDB 1zvz chain A

Region: 15 - 144
Aligned: 130
Modelled: 130
Confidence: 35.4%
Identity: 14%
PDB header:protein binding
Chain: A: PDB Molecule:vinculin;
PDBTitle: vinculin head (0-258) in complex with the talin rod residue2 820-844

Phyre2
7 |
| d1szia_ |

### PDB 1szi chain A

Region: 26 - 165
Aligned: 122
Modelled: 140
Confidence: 34.5%
Identity: 15%
Fold: Four-helical up-and-down bundle
Superfamily: Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain
Family: Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain

Phyre2
8 |
| d2a2pa1 |

### PDB 2a2p chain A domain 1

Region: 200 - 214
Aligned: 15
Modelled: 15
Confidence: 32.2%
Identity: 33%
Fold: Thioredoxin fold
Superfamily: Thioredoxin-like
Family: Selenoprotein W-related

Phyre2
9 |
| d1rqba1 |

### PDB 1rqb chain A domain 1

Region: 22 - 62
Aligned: 41
Modelled: 40
Confidence: 30.8%
Identity: 20%
Fold: RuvA C-terminal domain-like
Superfamily: post-HMGL domain-like
Family: Conserved carboxylase domain

Phyre2
10 |
| c2wpqA_ |

### PDB 2wpq chain A

Region: 41 - 135
Aligned: 95
Modelled: 95
Confidence: 27.6%
Identity: 7%
PDB header:membrane protein
Chain: A: PDB Molecule:trimeric autotransporter adhesin fragment;
PDBTitle: salmonella enterica sada 479-519 fused to gcn4 adaptors (2 sadak3, in-register fusion)

Phyre2
11 |
| c2vs0B_ |

### PDB 2vs0 chain B

Region: 60 - 143
Aligned: 79
Modelled: 84
Confidence: 21.7%
Identity: 9%
PDB header:cell invasion
Chain: B: PDB Molecule:virulence factor esxa;
PDBTitle: structural analysis of homodimeric staphylococcal aureus2 virulence factor esxa

Phyre2
12 |
| c3gvmA_ |

### PDB 3gvm chain A

Region: 60 - 143
Aligned: 79
Modelled: 84
Confidence: 18.2%
Identity: 13%
PDB header:viral protein
Chain: A: PDB Molecule:putative uncharacterized protein sag1039;
PDBTitle: structure of the homodimeric wxg-100 family protein from streptococcus2 agalactiae

Phyre2
13 |
| c1rr2A_ |

### PDB 1rr2 chain A

Region: 22 - 62
Aligned: 41
Modelled: 41
Confidence: 18.1%
Identity: 20%
PDB header:transferase
Chain: A: PDB Molecule:transcarboxylase 5s subunit;
PDBTitle: propionibacterium shermanii transcarboxylase 5s subunit bound to 2-2 ketobutyric acid

Phyre2
14 |
| d1wa8a1 |

### PDB 1wa8 chain A domain 1

Region: 60 - 135
Aligned: 71
Modelled: 76
Confidence: 15.4%
Identity: 15%
Fold: Ferritin-like
Superfamily: EsxAB dimer-like
Family: ESAT-6 like

Phyre2
15 |
| c3hkzZ_ |

### PDB 3hkz chain Z

Region: 91 - 114
Aligned: 24
Modelled: 24
Confidence: 14.5%
Identity: 33%
PDB header:transferase
Chain: Z: PDB Molecule:dna-directed rna polymerase subunit 13;
PDBTitle: the x-ray crystal structure of rna polymerase from archaea

Phyre2
16 |
| c3ayhA_ |

### PDB 3ayh chain A

Region: 26 - 78
Aligned: 53
Modelled: 53
Confidence: 14.3%
Identity: 13%
PDB header:transcription
Chain: A: PDB Molecule:dna-directed rna polymerase iii subunit rpc9;
PDBTitle: crystal structure of the c17/25 subcomplex from s. pombe rna2 polymerase iii

Phyre2
17 |
| c3hkzY_ |

### PDB 3hkz chain Y

Region: 91 - 115
Aligned: 25
Modelled: 25
Confidence: 13.8%
Identity: 32%
PDB header:transferase
Chain: Y: PDB Molecule:dna-directed rna polymerase subunit 13;
PDBTitle: the x-ray crystal structure of rna polymerase from archaea

Phyre2
18 |
| c2waqQ_ |

### PDB 2waq chain Q

Region: 91 - 115
Aligned: 25
Modelled: 25
Confidence: 13.6%
Identity: 28%
PDB header:transcription
Chain: Q: PDB Molecule:dna-directed rna polymerase rpo13 subunit;
PDBTitle: the complete structure of the archaeal 13-subunit dna-2 directed rna polymerase

Phyre2
19 |
| d2e1fa1 |

### PDB 2e1f chain A domain 1

Region: 3 - 82
Aligned: 80
Modelled: 80
Confidence: 12.5%
Identity: 10%
Fold: SAM domain-like
Superfamily: HRDC-like
Family: HRDC domain from helicases

Phyre2
20 |
| c2y0sJ_ |

### PDB 2y0s chain J

Region: 91 - 113
Aligned: 23
Modelled: 23
Confidence: 12.0%
Identity: 30%
PDB header:transferase
Chain: J: PDB Molecule:rna polymerase subunit 13;
PDBTitle: crystal structure of sulfolobus shibatae rna polymerase in2 p21 space group

Phyre2
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25 |
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31 |
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34 |
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40 |
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48 |
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50 |
51 |
52 |
53 |
54 |
55 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c1kmiZ_ |
|  | 100.0 | 100 | PDB header:signaling protein Chain: Z: PDB Molecule:chemotaxis protein chez; PDBTitle: crystal structure of an e.coli chemotaxis protein, chez
2 | c2pl9D_ |
|  | 97.1 | 100 | PDB header:signaling protien Chain: D: PDB Molecule:chemotaxis protein chez; PDBTitle: crystal structure of chey-mg(2+)-bef(3)(-) in complex with chez(c19)2 peptide solved from a p2(1)2(1)2 crystal
3 | c2pl9E_ |
|  | 95.9 | 100 | PDB header:signaling protien Chain: E: PDB Molecule:chemotaxis protein chez; PDBTitle: crystal structure of chey-mg(2+)-bef(3)(-) in complex with chez(c19)2 peptide solved from a p2(1)2(1)2 crystal
4 | c2pl9F_ |
|  | 95.9 | 100 | PDB header:signaling protien Chain: F: PDB Molecule:chemotaxis protein chez; PDBTitle: crystal structure of chey-mg(2+)-bef(3)(-) in complex with chez(c19)2 peptide solved from a p2(1)2(1)2 crystal
5 | c2damA_ |
|  | 43.1 | 75 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:etea protein; PDBTitle: solution structure of the novel identified uba-like domain2 in the n-terminal of human etea protein
6 | c1zvzA_ |
|  | 35.4 | 14 | PDB header:protein binding Chain: A: PDB Molecule:vinculin; PDBTitle: vinculin head (0-258) in complex with the talin rod residue2 820-844
7 | d1szia_ |
|  | 34.5 | 15 | Fold:Four-helical up-and-down bundle Superfamily:Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain Family:Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain
8 | d2a2pa1 |
|  | 32.2 | 33 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Selenoprotein W-related
9 | d1rqba1 |
|  | 30.8 | 20 | Fold:RuvA C-terminal domain-like Superfamily:post-HMGL domain-like Family:Conserved carboxylase domain
10 | c2wpqA_ |
|  | 27.6 | 7 | PDB header:membrane protein Chain: A: PDB Molecule:trimeric autotransporter adhesin fragment; PDBTitle: salmonella enterica sada 479-519 fused to gcn4 adaptors (2 sadak3, in-register fusion)
11 | c2vs0B_ |
|  | 21.7 | 9 | PDB header:cell invasion Chain: B: PDB Molecule:virulence factor esxa; PDBTitle: structural analysis of homodimeric staphylococcal aureus2 virulence factor esxa
12 | c3gvmA_ |
|  | 18.2 | 13 | PDB header:viral protein Chain: A: PDB Molecule:putative uncharacterized protein sag1039; PDBTitle: structure of the homodimeric wxg-100 family protein from streptococcus2 agalactiae
13 | c1rr2A_ |
|  | 18.1 | 20 | PDB header:transferase Chain: A: PDB Molecule:transcarboxylase 5s subunit; PDBTitle: propionibacterium shermanii transcarboxylase 5s subunit bound to 2-2 ketobutyric acid
14 | d1wa8a1 |
|  | 15.4 | 15 | Fold:Ferritin-like Superfamily:EsxAB dimer-like Family:ESAT-6 like
15 | c3hkzZ_ |
|  | 14.5 | 33 | PDB header:transferase Chain: Z: PDB Molecule:dna-directed rna polymerase subunit 13; PDBTitle: the x-ray crystal structure of rna polymerase from archaea
16 | c3ayhA_ |
|  | 14.3 | 13 | PDB header:transcription Chain: A: PDB Molecule:dna-directed rna polymerase iii subunit rpc9; PDBTitle: crystal structure of the c17/25 subcomplex from s. pombe rna2 polymerase iii
17 | c3hkzY_ |
|  | 13.8 | 32 | PDB header:transferase Chain: Y: PDB Molecule:dna-directed rna polymerase subunit 13; PDBTitle: the x-ray crystal structure of rna polymerase from archaea
18 | c2waqQ_ |
|  | 13.6 | 28 | PDB header:transcription Chain: Q: PDB Molecule:dna-directed rna polymerase rpo13 subunit; PDBTitle: the complete structure of the archaeal 13-subunit dna-2 directed rna polymerase
19 | d2e1fa1 |
|  | 12.5 | 10 | Fold:SAM domain-like Superfamily:HRDC-like Family:HRDC domain from helicases
20 | c2y0sJ_ |
|  | 12.0 | 30 | PDB header:transferase Chain: J: PDB Molecule:rna polymerase subunit 13; PDBTitle: crystal structure of sulfolobus shibatae rna polymerase in2 p21 space group
21 | c2y0sQ_ |
| not modelled | 12.0 | 30 | PDB header:transferase Chain: Q: PDB Molecule:rna polymerase subunit 13; PDBTitle: crystal structure of sulfolobus shibatae rna polymerase in2 p21 space group
22 | c2nx9B_ |
| not modelled | 11.7 | 20 | PDB header:lyase Chain: B: PDB Molecule:oxaloacetate decarboxylase 2, subunit alpha; PDBTitle: crystal structure of the carboxyltransferase domain of the2 oxaloacetate decarboxylase na+ pump from vibrio cholerae
23 | d1wa8b1 |
| not modelled | 11.3 | 12 | Fold:Ferritin-like Superfamily:EsxAB dimer-like Family:ESAT-6 like
24 | d1we1a_ |
| not modelled | 10.9 | 22 | Fold:Heme oxygenase-like Superfamily:Heme oxygenase-like Family:Eukaryotic type heme oxygenase
25 | c2wb1Q_ |
| not modelled | 10.3 | 30 | PDB header:transcription Chain: Q: PDB Molecule:dna-directed rna polymerase rpo13 subunit; PDBTitle: the complete structure of the archaeal 13-subunit dna-2 directed rna polymerase
26 | c2dnxA_ |
| not modelled | 10.1 | 13 | PDB header:transport protein Chain: A: PDB Molecule:syntaxin-12; PDBTitle: solution structure of rsgi ruh-063, an n-terminal domain of2 syntaxin 12 from human cdna
27 | c2wb1J_ |
| not modelled | 9.7 | 30 | PDB header:transcription Chain: J: PDB Molecule:dna-directed rna polymerase rpo13 subunit; PDBTitle: the complete structure of the archaeal 13-subunit dna-2 directed rna polymerase
28 | d2fyma2 |
| not modelled | 9.6 | 20 | Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like
29 | c3g67A_ |
| not modelled | 9.4 | 12 | PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein; PDBTitle: crystal structure of a soluble chemoreceptor from thermotoga2 maritima
30 | d1eija_ |
| not modelled | 9.3 | 50 | Fold:RuvA C-terminal domain-like Superfamily:Double-stranded DNA-binding domain Family:Double-stranded DNA-binding domain
31 | c2vzdD_ |
| not modelled | 9.2 | 50 | PDB header:cell adhesion Chain: D: PDB Molecule:paxillin; PDBTitle: crystal structure of the c-terminal calponin homology2 domain of alpha parvin in complex with paxillin ld1 motif
32 | c2krcA_ |
| not modelled | 9.1 | 13 | PDB header:transcription Chain: A: PDB Molecule:dna-directed rna polymerase subunit delta; PDBTitle: solution structure of the n-terminal domain of bacillus2 subtilis delta subunit of rna polymerase
33 | c2pmzF_ |
| not modelled | 9.1 | 16 | PDB header:translation, transferase Chain: F: PDB Molecule:dna-directed rna polymerase subunit f; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus
34 | c2vzdC_ |
| not modelled | 9.0 | 50 | PDB header:cell adhesion Chain: C: PDB Molecule:paxillin; PDBTitle: crystal structure of the c-terminal calponin homology2 domain of alpha parvin in complex with paxillin ld1 motif
35 | d2dnaa1 |
| not modelled | 8.4 | 31 | Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain
36 | d1dd5a_ |
| not modelled | 8.2 | 14 | Fold:RRF/tRNA synthetase additional domain-like Superfamily:Ribosome recycling factor, RRF Family:Ribosome recycling factor, RRF
37 | d2akza2 |
| not modelled | 7.6 | 33 | Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like
38 | d1ug7a_ |
| not modelled | 7.4 | 19 | Fold:Four-helical up-and-down bundle Superfamily:Domain from hypothetical 2610208m17rik protein Family:Domain from hypothetical 2610208m17rik protein
39 | d2al1a2 |
| not modelled | 7.3 | 53 | Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like
40 | d1pdza2 |
| not modelled | 7.1 | 27 | Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like
41 | c3k8wA_ |
| not modelled | 7.0 | 17 | PDB header:structural protein Chain: A: PDB Molecule:flagellin homolog; PDBTitle: crysatl structure of a bacterial cell-surface flagellin n20c45
42 | c3s90B_ |
| not modelled | 6.7 | 14 | PDB header:cell adhesion Chain: B: PDB Molecule:vinculin; PDBTitle: human vinculin head domain vh1 (residues 1-252) in complex with murine2 talin (vbs33; residues 1512-1546)
43 | d2dsma1 |
| not modelled | 6.6 | 40 | Fold:YqaI-like Superfamily:YqaI-like Family:YqaI-like
44 | c2drnC_ |
| not modelled | 6.6 | 36 | PDB header:transferase Chain: C: PDB Molecule:24-residues peptide from an a-kinase anchoring PDBTitle: docking and dimerization domain (d/d) of the type ii-alpha2 regulatory subunity of protein kinase a (pka) in complex3 with a peptide from an a-kinase anchoring protein
45 | d1jjcb2 |
| not modelled | 6.2 | 22 | Fold:Putative DNA-binding domain Superfamily:Putative DNA-binding domain Family:Domains B1 and B5 of PheRS-beta, PheT
46 | d1st6a5 |
| not modelled | 6.1 | 15 | Fold:Four-helical up-and-down bundle Superfamily:alpha-catenin/vinculin-like Family:alpha-catenin/vinculin
47 | c2a93B_ |
| not modelled | 6.0 | 57 | PDB header:leucine zippers Chain: B: PDB Molecule:c-myc-max heterodimeric leucine zipper; PDBTitle: nmr solution structure of the c-myc-max heterodimeric2 leucine zipper, 40 structures
48 | d1qf9a_ |
| not modelled | 5.9 | 38 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
49 | d1u2ma_ |
| not modelled | 5.7 | 40 | Fold:OmpH-like Superfamily:OmpH-like Family:OmpH-like
50 | c2k5cA_ |
| not modelled | 5.7 | 27 | PDB header:metal binding protein Chain: A: PDB Molecule:uncharacterized protein pf0385; PDBTitle: nmr structure for pf0385
51 | d1s94a_ |
| not modelled | 5.5 | 14 | Fold:STAT-like Superfamily:t-snare proteins Family:t-snare proteins
52 | c1s94A_ |
| not modelled | 5.5 | 14 | PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:s-syntaxin; PDBTitle: crystal structure of the habc domain of neuronal syntaxin from the2 squid loligo pealei
53 | c3cdhB_ |
| not modelled | 5.4 | 19 | PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, marr family; PDBTitle: crystal structure of the marr family transcriptional regulator spo14532 from silicibacter pomeroyi dss-3
54 | c2ch7A_ |
| not modelled | 5.2 | 14 | PDB header:chemotaxis Chain: A: PDB Molecule:methyl-accepting chemotaxis protein; PDBTitle: crystal structure of the cytoplasmic domain of a bacterial2 chemoreceptor from thermotoga maritima
55 | c3tj5A_ |
| not modelled | 5.1 | 17 | PDB header:protein binding/toxin Chain: A: PDB Molecule:vinculin; PDBTitle: human vinculin head domain (vh1, residues 1-258) in complex with the2 vinculin binding site of the surface cell antigen 4 (sca4-vbs-n;3 residues 412-434) from rickettsia rickettsii

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0