Phyre 2 alignment of P0A9H9 with c2pmzF_

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Job Description | P0A9H9
Confidence | 9.10% | Date | Thu Jan 5 11:10:17 GMT 2012
Rank | 33 | Aligned Residues | 37
% Identity | 16% | Template | c2pmzF_
PDB info | PDB header:translation, transferase | Chain: F: PDB Molecule:dna-directed rna polymerase subunit f; | PDBTitle: archaeal rna polymerase from sulfolobus solfataricus
Resolution | 3.40 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 25 | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . |  | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | T | R | M | L | R | D | S | L | R | E | L | G | L | D | Q | A | I | . | A | E | A | A | E | A | I | P | D | A | R | D | R | L | Y | Y | V | V | Q | M
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | A | Q | K | V | I | E | E | L | S | N | I | V | S | R | E | D | V | R | A | I | L | A | S | I | C | P | T | T | S | D | E | V | R | S | I | L | V | M
Template Known Secondary structure |  |  |  |  |  | T | T | T | T | T | T | S |  |  |  |  |  |  |  |  | T |  |  |  |  |  |  | S | S | T | T | T | T | T | T | T |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 52 | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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