Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	I	P	A	F	G	L	G	T	F	R	L	K	D	D	V	V	I	S	S	V	I	T	A	L	E	L	G	Y	R	A	I	D	T	A	Q	I	Y	D	N	E	A	A	V	G	Q	A	I	A	E	S	G	V	P	R	H	E	L	Y
Secondary structure
SS confidence
Disorder		?	?	?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		I	T	T	K	I	W	I	E	N	L	S	K	D	K	L	I	P	S	L	K	E	S	L	Q	K	L	R	T	D	Y	V	D	L	T	L	I	H	W	P	S	P	N	D	E	V	S	V	E	E	F	M	Q	A	L	L	E	A	K	K	Q
Secondary structure
SS confidence
Disorder											?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		G	L	T	R	E	I	G	I	S	N	F	T	I	P	L	M	E	K	A	I	A	A	V	G	A	E	N	I	A	T	N	Q	I	E	L	S	P	Y	L	Q	N	R	K	V	V	A	W	A	K	Q	H	G	I	H	I	T	S	Y	M	T
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		L	A	Y	G	K	A	L	K	D	E	V	I	A	R	I	A	A	K	H	N	A	T	P	A	Q	V	I	L	A	W	A	M	G	E	G	Y	S	V	I	P	S	S	T	K	R	K	N	L	E	S	N	L	K	A	Q	N	L	Q	L	D
Secondary structure
SS confidence
Disorder				?		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Sequence		A	E	D	K	K	A	I	A	A	L	D	C	N	D	R	L	V	S	P	E	G	L	A	P	E	W	D
Secondary structure
SS confidence
Disorder										?																?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3up8 chain B Region: 1 - 267 Aligned: 264 Modelled: 267 Confidence: 100.0% Identity: 44% PDB header:oxidoreductase Chain: B: PDB Molecule:putative 2,5-diketo-d-gluconic acid reductase b; PDBTitle: crystal structure of a putative 2,5-diketo-d-gluconic acid reductase b Phyre2 PDB 1q5m chain A Region: 1 - 265 Aligned: 265 Modelled: 265 Confidence: 100.0% Identity: 32% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 1frb chain A Region: 1 - 267 Aligned: 267 Modelled: 267 Confidence: 100.0% Identity: 34% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 1hqt chain A Region: 1 - 267 Aligned: 265 Modelled: 267 Confidence: 100.0% Identity: 32% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 3h7u chain A Region: 1 - 266 Aligned: 265 Modelled: 266 Confidence: 100.0% Identity: 30% PDB header:oxidoreductase Chain: A: PDB Molecule:aldo-keto reductase; PDBTitle: crystal structure of the plant stress-response enzyme akr4c9 Phyre2 PDB 1j96 chain A Region: 1 - 264 Aligned: 264 Modelled: 264 Confidence: 100.0% Identity: 33% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 3f7j chain B Region: 1 - 260 Aligned: 256 Modelled: 257 Confidence: 100.0% Identity: 38% PDB header:oxidoreductase Chain: B: PDB Molecule:yvgn protein; PDBTitle: b.subtilis yvgn Phyre2 PDB 2alr chain A Region: 1 - 266 Aligned: 262 Modelled: 266 Confidence: 100.0% Identity: 33% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 1mi3 chain A Region: 1 - 262 Aligned: 261 Modelled: 262 Confidence: 100.0% Identity: 35% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 1ah4 chain A Region: 1 - 267 Aligned: 267 Modelled: 267 Confidence: 100.0% Identity: 36% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 1afs chain A Region: 1 - 264 Aligned: 264 Modelled: 264 Confidence: 100.0% Identity: 33% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 1qwk chain A Region: 1 - 264 Aligned: 263 Modelled: 264 Confidence: 100.0% Identity: 36% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 1c9w chain A Region: 1 - 267 Aligned: 267 Modelled: 267 Confidence: 100.0% Identity: 33% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 1us0 chain A Region: 1 - 266 Aligned: 266 Modelled: 266 Confidence: 100.0% Identity: 35% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 1s1p chain A Region: 1 - 266 Aligned: 266 Modelled: 266 Confidence: 100.0% Identity: 33% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 2bgs chain A Region: 1 - 265 Aligned: 264 Modelled: 265 Confidence: 100.0% Identity: 36% PDB header:oxidoreductase Chain: A: PDB Molecule:aldose reductase; PDBTitle: holo aldose reductase from barley Phyre2 PDB 2wzt chain A Region: 1 - 252 Aligned: 250 Modelled: 252 Confidence: 100.0% Identity: 37% PDB header:oxidoreductase Chain: A: PDB Molecule:aldo-keto reductase; PDBTitle: crystal structure of a mycobacterium aldo-keto reductase in2 its apo and liganded form Phyre2 PDB 1mzr chain A Region: 1 - 260 Aligned: 256 Modelled: 260 Confidence: 100.0% Identity: 38% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 3buv chain B Region: 1 - 267 Aligned: 267 Modelled: 267 Confidence: 100.0% Identity: 32% PDB header:oxidoreductase Chain: B: PDB Molecule:3-oxo-5-beta-steroid 4-dehydrogenase; PDBTitle: crystal structure of human delta(4)-3-ketosteroid 5-beta-reductase in2 complex with nadp and hepes. resolution: 1.35 a. Phyre2 PDB 1zgd chain B Region: 1 - 267 Aligned: 266 Modelled: 267 Confidence: 100.0% Identity: 32% PDB header:plant protein Chain: B: PDB Molecule:chalcone reductase; PDBTitle: chalcone reductase complexed with nadp+ at 1.7 angstrom2 resolution Phyre2 1 c3up8B_ 2 d1q5ma_ 3 d1frba_ 4 d1hqta_ 5 c3h7uA_ 6 d1j96a_ 7 c3f7jB_ 8 d2alra_ 9 d1mi3a_ 10 d1ah4a_ 11 d1afsa_ 12 d1qwka_ 13 d1c9wa_ 14 d1us0a_ 15 d1s1pa_ 16 c2bgsA_ 17 c2wztA_ 18 d1mzra_ 19 c3buvB_ 20 c1zgdB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3up8B_ 100.0 44 PDB header:oxidoreductase Chain: B: PDB Molecule:putative 2,5-diketo-d-gluconic acid reductase b; PDBTitle: crystal structure of a putative 2,5-diketo-d-gluconic acid reductase b 2 d1q5ma_ 100.0 32 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 3 d1frba_ 100.0 34 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 4 d1hqta_ 100.0 32 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 5 c3h7uA_ 100.0 30 PDB header:oxidoreductase Chain: A: PDB Molecule:aldo-keto reductase; PDBTitle: crystal structure of the plant stress-response enzyme akr4c9 6 d1j96a_ 100.0 33 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 7 c3f7jB_ 100.0 38 PDB header:oxidoreductase Chain: B: PDB Molecule:yvgn protein; PDBTitle: b.subtilis yvgn 8 d2alra_ 100.0 33 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 9 d1mi3a_ 100.0 35 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 10 d1ah4a_ 100.0 36 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 11 d1afsa_ 100.0 33 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 12 d1qwka_ 100.0 36 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 13 d1c9wa_ 100.0 33 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 14 d1us0a_ 100.0 35 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 15 d1s1pa_ 100.0 33 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 16 c2bgsA_ 100.0 36 PDB header:oxidoreductase Chain: A: PDB Molecule:aldose reductase; PDBTitle: holo aldose reductase from barley 17 c2wztA_ 100.0 37 PDB header:oxidoreductase Chain: A: PDB Molecule:aldo-keto reductase; PDBTitle: crystal structure of a mycobacterium aldo-keto reductase in2 its apo and liganded form 18 d1mzra_ 100.0 38 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 19 c3buvB_ 100.0 32 PDB header:oxidoreductase Chain: B: PDB Molecule:3-oxo-5-beta-steroid 4-dehydrogenase; PDBTitle: crystal structure of human delta(4)-3-ketosteroid 5-beta-reductase in2 complex with nadp and hepes. resolution: 1.35 a. 20 c1zgdB_ 100.0 32 PDB header:plant protein Chain: B: PDB Molecule:chalcone reductase; PDBTitle: chalcone reductase complexed with nadp+ at 1.7 angstrom2 resolution 21 c3h7rA_ not modelled 100.0 31 PDB header:oxidoreductase Chain: A: PDB Molecule:aldo-keto reductase; PDBTitle: crystal structure of the plant stress-response enzyme akr4c8 22 c3b3dA_ not modelled 100.0 37 PDB header:oxidoreductase Chain: A: PDB Molecule:putative morphine dehydrogenase; PDBTitle: b.subtilis ytbe 23 d1vp5a_ not modelled 100.0 33 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 24 c1vbjB_ not modelled 100.0 32 PDB header:oxidoreductase Chain: B: PDB Molecule:prostaglandin f synthase; PDBTitle: the crystal structure of prostaglandin f synthase from2 trypanosoma brucei 25 c3o0kB_ not modelled 100.0 37 PDB header:oxidoreductase Chain: B: PDB Molecule:aldo/keto reductase; PDBTitle: crystal structure of aldo/keto reductase from brucella melitensis 26 d1lqaa_ not modelled 100.0 28 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 27 d1hw6a_ not modelled 100.0 42 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 28 c3krbB_ not modelled 100.0 33 PDB header:oxidoreductase Chain: B: PDB Molecule:aldose reductase; PDBTitle: structure of aldose reductase from giardia lamblia at 1.75a resolution 29 d3eaua1 not modelled 100.0 27 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 30 c3lutA_ not modelled 100.0 27 PDB header:membrane protein Chain: A: PDB Molecule:voltage-gated potassium channel subunit beta-2; PDBTitle: a structural model for the full-length shaker potassium channel kv1.2 31 d1ur3m_ not modelled 100.0 26 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 32 c3erpA_ not modelled 100.0 27 PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxidoreductase; PDBTitle: structure of idp01002, a putative oxidoreductase from and essential2 gene of salmonella typhimurium 33 d1gvea_ not modelled 100.0 21 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 34 c3n6qF_ not modelled 100.0 24 PDB header:oxidoreductase Chain: F: PDB Molecule:yghz aldo-keto reductase; PDBTitle: crystal structure of yghz from e. coli 35 d1pyfa_ not modelled 100.0 33 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 36 c3n2tA_ not modelled 100.0 25 PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxidoreductase; PDBTitle: structure of the glycerol dehydrogenase akr11b4 from gluconobacter2 oxydans 37 d1pz1a_ not modelled 100.0 28 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 38 c2bp1C_ not modelled 100.0 24 PDB header:oxidoreductase Chain: C: PDB Molecule:aflatoxin b1 aldehyde reductase member 2; PDBTitle: structure of the aflatoxin aldehyde reductase in complex2 with nadph 39 c1ynpA_ not modelled 100.0 25 PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase; PDBTitle: aldo-keto reductase akr11c1 from bacillus halodurans (apo form) 40 c3ln3A_ not modelled 100.0 30 PDB header:oxidoreductase Chain: A: PDB Molecule:dihydrodiol dehydrogenase; PDBTitle: crystal structure of putative reductase (np_038806.2) from2 mus musculus at 1.18 a resolution 41 c3g8rA_ not modelled 82.1 15 PDB header:biosynthetic protein Chain: A: PDB Molecule:probable spore coat polysaccharide biosynthesis protein e; PDBTitle: crystal structure of putative spore coat polysaccharide biosynthesis2 protein e from chromobacterium violaceum atcc 12472 42 c3ngfA_ not modelled 79.8 10 PDB header:isomerase Chain: A: PDB Molecule:ap endonuclease, family 2; PDBTitle: crystal structure of ap endonuclease, family 2 from brucella2 melitensis 43 c1xuzA_ not modelled 68.3 17 PDB header:biosynthetic protein Chain: A: PDB Molecule:polysialic acid capsule biosynthesis protein siac; PDBTitle: crystal structure analysis of sialic acid synthase (neub)from2 neisseria meningitidis, bound to mn2+, phosphoenolpyruvate, and n-3 acetyl mannosaminitol 44 d1jpma1 not modelled 58.6 15 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:D-glucarate dehydratase-like 45 d2zdra2 not modelled 52.1 17 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:NeuB-like 46 d1k77a_ not modelled 44.0 8 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Hypothetical protein YgbM (EC1530) 47 d1gqna_ not modelled 40.8 15 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 48 c1vliA_ not modelled 37.7 8 PDB header:biosynthetic protein Chain: A: PDB Molecule:spore coat polysaccharide biosynthesis protein spse; PDBTitle: crystal structure of spore coat polysaccharide biosynthesis protein2 spse (bsu37870) from bacillus subtilis at 2.38 a resolution 49 d7odca2 not modelled 35.8 13 Fold:TIM beta/alpha-barrel Superfamily:PLP-binding barrel Family:Alanine racemase-like, N-terminal domain 50 c2ph5A_ not modelled 34.5 11 PDB header:transferase Chain: A: PDB Molecule:homospermidine synthase; PDBTitle: crystal structure of the homospermidine synthase hss from legionella2 pneumophila in complex with nad, northeast structural genomics target3 lgr54 51 d2ijqa1 not modelled 33.5 12 Fold:Hyaluronidase domain-like Superfamily:TTHA0068-like Family:TTHA0068-like 52 d2q02a1 not modelled 32.3 9 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:IolI-like 53 d1vp8a_ not modelled 29.1 18 Fold:Pyruvate kinase C-terminal domain-like Superfamily:PK C-terminal domain-like Family:MTH1675-like 54 c3js3C_ not modelled 29.0 14 PDB header:lyase Chain: C: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: crystal structure of type i 3-dehydroquinate dehydratase (arod) from2 clostridium difficile with covalent reaction intermediate 55 c3l2iB_ not modelled 28.6 13 PDB header:lyase Chain: B: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: 1.85 angstrom crystal structure of the 3-dehydroquinate dehydratase2 (arod) from salmonella typhimurium lt2. 56 c3aamA_ not modelled 27.7 22 PDB header:hydrolase Chain: A: PDB Molecule:endonuclease iv; PDBTitle: crystal structure of endonuclease iv from thermus thermophilus hb8 57 d3bofa2 not modelled 27.0 15 Fold:TIM beta/alpha-barrel Superfamily:Homocysteine S-methyltransferase Family:Homocysteine S-methyltransferase 58 d1i27a_ not modelled 26.4 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:C-terminal domain of the rap74 subunit of TFIIF 59 d1vlia2 not modelled 23.3 8 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:NeuB-like 60 c3cnyA_ not modelled 22.0 10 PDB header:biosynthetic protein Chain: A: PDB Molecule:inositol catabolism protein iole; PDBTitle: crystal structure of a putative inositol catabolism protein iole2 (iole, lp_3607) from lactobacillus plantarum wcfs1 at 1.85 a3 resolution 61 c3oa3A_ not modelled 20.5 14 PDB header:lyase Chain: A: PDB Molecule:aldolase; PDBTitle: crystal structure of a putative deoxyribose-phosphate aldolase from2 coccidioides immitis 62 c3smaD_ not modelled 20.3 23 PDB header:transferase Chain: D: PDB Molecule:frbf; PDBTitle: a new n-acetyltransferase fold in the structure and mechanism of the2 phosphonate biosynthetic enzyme frbf 63 d2plca_ not modelled 20.0 46 Fold:TIM beta/alpha-barrel Superfamily:PLC-like phosphodiesterases Family:Bacterial PLC 64 d1j5ya2 not modelled 20.0 15 Fold:HPr-like Superfamily:Putative transcriptional regulator TM1602, C-terminal domain Family:Putative transcriptional regulator TM1602, C-terminal domain 65 d1r0ma1 not modelled 19.9 19 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:D-glucarate dehydratase-like 66 c3ic5A_ not modelled 19.6 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative saccharopine dehydrogenase; PDBTitle: n-terminal domain of putative saccharopine dehydrogenase from ruegeria2 pomeroyi. 67 d1xp3a1 not modelled 19.2 11 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Endonuclease IV 68 d1nu5a1 not modelled 18.9 15 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:D-glucarate dehydratase-like 69 c3dx5A_ not modelled 18.4 11 PDB header:lyase Chain: A: PDB Molecule:uncharacterized protein asbf; PDBTitle: crystal structure of the probable 3-dhs dehydratase asbf involved in2 the petrobactin synthesis from bacillus anthracis 70 c3ktcB_ not modelled 17.8 15 PDB header:isomerase Chain: B: PDB Molecule:xylose isomerase; PDBTitle: crystal structure of putative sugar isomerase (yp_050048.1) from2 erwinia carotovora atroseptica scri1043 at 1.54 a resolution 71 d2ptda_ not modelled 16.5 23 Fold:TIM beta/alpha-barrel Superfamily:PLC-like phosphodiesterases Family:Bacterial PLC 72 c2p0oA_ not modelled 16.2 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein duf871; PDBTitle: crystal structure of a conserved protein from locus ef_2437 in2 enterococcus faecalis with an unknown function 73 d2gdqa1 not modelled 16.2 12 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:D-glucarate dehydratase-like 74 c3gpqA_ not modelled 15.6 22 PDB header:viral protein/rna Chain: A: PDB Molecule:non-structural protein 3; PDBTitle: crystal structure of macro domain of chikungunya virus in complex with2 rna 75 d1fuia2 not modelled 15.2 14 Fold:FucI/AraA N-terminal and middle domains Superfamily:FucI/AraA N-terminal and middle domains Family:L-fucose isomerase, N-terminal and second domains 76 d1x87a_ not modelled 15.0 15 Fold:Urocanase Superfamily:Urocanase Family:Urocanase 77 d1ub3a_ not modelled 14.3 15 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 78 d1o0ya_ not modelled 14.1 12 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 79 d1pv8a_ not modelled 14.0 21 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) 80 c2zvrA_ not modelled 13.6 15 PDB header:isomerase Chain: A: PDB Molecule:uncharacterized protein tm_0416; PDBTitle: crystal structure of a d-tagatose 3-epimerase-related2 protein from thermotoga maritima 81 c3kwsB_ not modelled 13.5 7 PDB header:isomerase Chain: B: PDB Molecule:putative sugar isomerase; PDBTitle: crystal structure of putative sugar isomerase (yp_001305149.1) from2 parabacteroides distasonis atcc 8503 at 1.68 a resolution 82 c3e4fB_ not modelled 12.8 19 PDB header:transferase Chain: B: PDB Molecule:aminoglycoside n3-acetyltransferase; PDBTitle: crystal structure of ba2930- a putative aminoglycoside n3-2 acetyltransferase from bacillus anthracis 83 d1u83a_ not modelled 12.4 22 Fold:TIM beta/alpha-barrel Superfamily:(2r)-phospho-3-sulfolactate synthase ComA Family:(2r)-phospho-3-sulfolactate synthase ComA 84 c1u83A_ not modelled 12.4 22 PDB header:lyase Chain: A: PDB Molecule:phosphosulfolactate synthase; PDBTitle: psl synthase from bacillus subtilis 85 c2cg8B_ not modelled 11.7 15 PDB header:lyase/transferase Chain: B: PDB Molecule:dihydroneopterin aldolase 6-hydroxymethyl-7,8- PDBTitle: the bifunctional dihydroneopterin aldolase 6-hydroxymethyl-2 7,8-dihydropterin synthase from streptococcus pneumoniae 86 c3dnfB_ not modelled 10.9 9 PDB header:oxidoreductase Chain: B: PDB Molecule:4-hydroxy-3-methylbut-2-enyl diphosphate reductase; PDBTitle: structure of (e)-4-hydroxy-3-methyl-but-2-enyl diphosphate reductase,2 the terminal enzyme of the non-mevalonate pathway 87 d1ulza2 not modelled 10.9 31 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 88 d1sjda1 not modelled 10.7 18 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:D-glucarate dehydratase-like 89 c3gqeA_ not modelled 10.6 30 PDB header:viral protein Chain: A: PDB Molecule:non-structural protein 3; PDBTitle: crystal structure of macro domain of venezuelan equine encephalitis2 virus 90 d1spva_ not modelled 10.2 14 Fold:Macro domain-like Superfamily:Macro domain-like Family:Macro domain 91 d1nexa1 not modelled 10.1 17 Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like 92 c1x7fA_ not modelled 10.1 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:outer surface protein; PDBTitle: crystal structure of an uncharacterized b. cereus protein 93 d2cp6a1 not modelled 9.9 23 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 94 c2fknC_ not modelled 9.5 17 PDB header:lyase Chain: C: PDB Molecule:urocanate hydratase; PDBTitle: crystal structure of urocanase from bacillus subtilis 95 d2jn6a1 not modelled 9.4 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Cgl2762-like 96 d2chra1 not modelled 9.4 16 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:D-glucarate dehydratase-like 97 c2nx9B_ not modelled 9.3 32 PDB header:lyase Chain: B: PDB Molecule:oxaloacetate decarboxylase 2, subunit alpha; PDBTitle: crystal structure of the carboxyltransferase domain of the2 oxaloacetate decarboxylase na+ pump from vibrio cholerae 98 d1geqa_ not modelled 9.3 18 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 99 d1uwka_ not modelled 9.2 13 Fold:Urocanase Superfamily:Urocanase Family:Urocanase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0