HHsearch 1.5 NAME batch____ FAM FILE query COM //bmm/www/servers/phyre2/HH/hhmake -i /bmm/www/servers/phyre2/public_html/phyre2_output/6a81696293da7d1e/query.a3m -o /bmm/www/servers/phyre2/public_html/phyre2_output/6a81696293da7d1e/query.hhm DATE Mon Jan 16 14:49:43 2012 LENG 105 match states, 105 columns in multiple alignment FILT 111 out of 344 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.3 EVD 0.4577 1.6754 SEQ >ss_pred CCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCCCCCCCCCC CCCCC >ss_conf 9748999999985379718999942200178899983499999725676999789999999999998337814999981687899974088899886589 63259 >Consensus MxxxxxIxxxLxxxlxxxxlxVxdxSxxHxxxxgxxxHfxixIVSxxFxGxsxvxRHRxVyxxLxxelxxxIHALsiktxTpxEwxxxxxxxxxspxCxg xxxxx >batch____ MMIRERIEEKLRAAFQPVFLEVVDESYRHNVPAGSESHFKVVLVSDRFTGERFLNRHRMIYSTLAEELSTTVHALALHTYTIKEWEGLQDTVFASPPCRG AGSIA >UniRef50_Q4MZ79(21-102:112) Putative uncharacterized protein n=1 Tax=Theileria parva RepID=Q4MZ79_THEPA E=7e-10 s/c=0.79 id=20% cov=77% ----QSLKEAITSKLNPICFYVKNDPNYSTYVYDE--HFTGILCSPLFEGKTYAEINQIVNNILEPlELKGRVH---LNCQPPSQYNKLK---------- ------ >UniRef50_C5LN59(383-458:767) Pap-inositol-1,4-phosphatase, putative n=4 Tax=Perkinsus marinus ATCC 50983 RepID=C5LN59_9ALVE E=2e-06 s/c=0.71 id=23% cov=67% --------KTLKERVYPHHQQEVHRSLHGEQAPPSNTHsnthrLGILVVDPSFEGVSTIKRHREVQGLVKDLLDSGeLHAISL----------------- ----------- >UniRef50_Q2SBJ2(1-80:80) Predicted transcriptional regulator, BolA superfamily n=3 Tax=Gammaproteobacteria RepID=Q2SBJ2_HAHCH E=3e-16 s/c=1.08 id=29% cov=73% ----EALQEILQEKLSDCEVRVE----------GDGYHYQVVAVGERFAGLSPVKKQQTVYSCIHDLIADGtVHAVSIKTYTPDEWAAANK--------- ------ >UniRef50_B6BVB1(1-81:81) BolA-like protein n=1 Tax=beta proteobacterium KB13 RepID=B6BVB1_9PROT E=3e-15 s/c=1.02 id=22% cov=78% -MHKDEIKKVIEKDIDCHHIDVM---------GDDGAHFEALVISNEFLNLNRVQRHQLVYQSLGDLMNEKIHALSLKLYDLSEWDQIKGE--------- ----- >UniRef50_Q5N9F3(3-92:94) Os01g0866600 protein n=6 Tax=Magnoliophyta RepID=Q5N9F3_ORYSJ E=1e-13 s/c=0.87 id=27% cov=86% -VTKEDVEAAITSSLSPSSLVVTDTS------GGCGASYEIEVVSEKFEGKRLLERHRMVNTALAPHMA-EIHAVSIkKALTPAQAQPQPEPAADKAP-- ------ >UniRef50_A4EJR1(13-92:95) Stress induced morphogen, BolA n=3 Tax=Rhodobacterales RepID=A4EJR1_9RHOB E=1e-14 s/c=1.01 id=29% cov=73% MALETEIRDAL-GSLSPQHVDVINESALHAGHSGDdgsgESHWRVVIKAASLDDMSRIARHRAVHAALGKDIIGRIHALAI------------------- --------- >UniRef50_Q057E7(13-96:99) Transcriptional activator of morphogenic pathway n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q057E7_BUCCC E=8e-12 s/c=0.85 id=15% cov=81% --------------FDIFYLKISKVTHFNKNYRKNSKHYMIIISAYEFNKLSLLEQHKKIYKIFFKYIPKKIYSIQIQTFTVFQWKEKKKKIFLPVSC-- ----- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * 5395 * 5094 79 * * * * * * * * * 1 0 * * * * * * 4848 0 0 M 2 6000 * 4788 * * 4385 * * * 3781 1861 3055 * 5632 * 2277 3443 3138 * * 2 23 * 5981 * * * * 5380 0 0 I 3 5824 * 6150 6691 * * 5597 1862 * 4415 4285 3903 * 6279 3993 3572 2881 2410 * 6129 3 37 5288 * 615 1526 * 0 5402 1526 1000 R 4 2308 * * 2633 * 6393 * 3462 2530 6684 * 4981 4299 3013 4636 4327 4461 6718 * * 4 0 * * * * 0 * 5488 0 1000 E 5 5150 * 2295 1755 * * * * 3107 * * 3853 * 2736 4622 5390 3796 * * * 5 0 * * * * * * 5588 0 0 R 6 3069 * 3908 3113 * 6670 6960 4781 3372 3499 * * * 2863 2713 4163 4214 4806 * 5380 6 0 * * * * * * 5590 0 0 I 7 * * * * * * * 727 * 2458 2987 * * * * * * 3510 * * 7 33 5454 * 1585 585 * * 5600 1607 0 E 8 4488 * 6568 1782 * 6531 5213 3733 1822 5642 * 6551 * 4287 3270 6139 4771 7132 7103 7069 8 0 * * * * * * 5600 0 0 E 9 3219 6416 3637 2296 * 5847 * 6008 3043 7427 * 2991 * 2751 6034 3807 3721 * * * 9 15 * 6632 * * * * 5605 0 0 K 10 3915 * 6723 6296 * * 5817 3116 1471 2904 5112 * * 4694 3175 4759 4228 6010 * * 10 0 * * * * 0 * 5594 0 1000 L 11 * * * * * * * 1649 * 672 6355 * * * * * * 4600 * * 11 84 7014 4356 1000 1000 * * 5605 1000 0 R 12 5841 6173 * 2660 * * 5181 6798 2743 3134 6484 5692 * 2784 3107 4107 3058 4618 * * 12 49 * 4900 * * 0 * 5629 0 2442 A 13 2567 6192 2827 2760 * 5586 * 4468 3496 6106 6302 4450 * 3996 4556 2579 5110 * * * 13 0 * * * * 0 * 5602 0 1847 A 14 1962 * 4793 3645 6214 4487 6290 6395 2524 * * 4012 * 4925 4942 2829 4250 4324 * * 14 18 * 6307 * * * * 5605 0 0 F 15 6377 * 6431 * 2102 * * 3202 * 855 5377 * * * * * * 4472 * 6306 15 12 6942 * 0 * * 0 5654 1000 1000 Q 16 4327 * 4058 3146 * 4089 7007 6637 3014 * * 2741 2754 3883 * 2705 5646 5464 * 6032 16 58 4674 * 276 2520 * 0 5654 2218 1000 P 17 3692 4596 4030 4608 * 5434 * 3403 * 4182 6360 4975 1256 6306 * 6964 4651 3914 * 5883 17 32 5532 * 0 * * 0 5654 1572 1000 V 18 2928 6647 4313 2740 4921 6790 4365 4007 5469 3638 * 6327 * 3934 * 3362 2704 3961 * 6632 18 13 * 6829 * * * 0 5654 0 1000 F 19 6705 5440 4543 2715 3311 * 2432 5478 3925 4559 6726 5311 * 4775 4220 5321 3722 4071 * 3831 19 27 6925 6601 0 * * 0 5652 1000 1408 L 20 5878 6157 * 6470 4516 * * 2498 * 1110 5333 * * 4629 * * * 2264 * * 20 16 * 6517 * * 1599 578 5646 0 1904 E 21 5650 * 3873 1615 6662 * 5214 4939 2994 5819 * 4796 * 3358 5178 4546 4395 3950 * 4147 21 0 * * * * * 0 5649 0 2022 V 22 5753 * * 5992 6613 * * 1473 * 3862 6339 * * * * 6592 * 989 * * 22 77 6646 4565 0 * * 0 5649 1000 2022 V 23 5710 * 4762 2362 4786 7120 6260 2845 3722 5825 7064 4510 * 5085 4479 5488 3703 2412 * 4387 23 89 * 4065 * * 1747 510 5623 0 3027 D 24 6624 5531 822 5121 * 6170 5945 * 5491 * * 1884 * * * 5437 5838 6653 * * 24 85 6064 4561 1000 1000 2690 243 5642 1000 3313 E 25 5463 * 2073 1529 6356 6412 * 4406 5368 3997 * 5370 6821 5143 5197 * 3893 3657 * * 25 210 * 2881 * * * 0 5614 0 4006 S 26 * * 5970 * * 5978 * 6167 * * * * 5154 * * 340 3018 6278 * * 26 302 5351 2606 1267 775 * 0 5443 1559 4235 Y 27 2960 * 3953 * 4154 4766 1753 * 4250 3849 5797 4070 5293 4998 5561 5838 5991 5729 * 3511 27 147 5141 3861 1901 450 3952 96 5297 1595 4409 R 28 6103 * 5697 5025 5039 6666 4214 5685 1996 2385 3612 3285 * 4683 3803 5948 * 4772 * 4964 28 97 5080 4816 1585 585 * 0 5247 1477 4786 H 29 6041 * * * * 4008 323 5914 * * * 4999 5544 * * 4928 * 5578 * * 29 27 * 5742 * * * 0 5207 0 4724 N 30 1664 5531 5544 4589 * 4537 4258 5695 3311 * * 3235 * 5580 * 2746 4939 3725 * * 30 53 6108 5531 1000 1000 2800 224 5179 1000 4676 V 31 5092 * 4434 * 5431 1635 3843 4305 5688 6349 * 3854 * 4666 5670 4204 * 2339 * 4404 31 21 6122 * 1585 585 4114 86 5309 1000 4593 P 32 3687 * 5731 * 5908 4669 1356 * 5906 6307 * 4841 2743 6228 5971 3279 4830 5038 * 4462 32 133 3505 * 2119 377 967 1034 5356 2644 4599 A 33 2893 5545 3896 4967 * 2406 4378 6632 4054 5235 * 5358 3618 4767 4056 3554 5584 4537 * 4068 33 119 3891 6410 2467 288 1458 653 5495 2836 4033 G 34 6881 * 3447 6996 * 736 5451 * 4823 6500 * 3346 5847 * 4667 4729 5611 6760 * * 34 166 3199 * 2323 322 814 1214 5568 3269 3549 S 35 3869 2510 2592 4217 * 2621 * * 4389 6627 * 3100 * 4914 6353 3169 4552 * * * 35 90 5139 4969 2234 345 743 1314 5629 1920 2699 E 36 4255 * 6858 1801 * 1309 * 4888 6121 * * 3540 5820 3971 * 5512 * 6533 * * 36 31 5578 * 1464 650 1843 471 5581 1638 2478 S 37 3025 5284 4115 5629 * 3505 7325 6737 4827 * 6634 5229 * 5077 5537 1872 2317 5156 * 4477 37 34 6195 6674 1585 585 519 1726 5577 1000 2059 H 38 6086 * * * 7002 * 430 * 4258 * 3832 5333 * 6437 * 3982 * * * 6243 38 22 6036 * 2322 322 * 0 5675 1000 1456 F 39 * * * * 769 * * 4098 * 3307 * * * * * * * 5852 5180 2258 39 0 * * * * 914 1092 5675 0 1456 K 40 4266 * 4178 3025 5552 4967 6565 6172 2056 5896 5565 4738 * 4927 2526 3519 3938 7452 * 6409 40 0 * * * * 0 * 5675 0 1000 V 41 3256 * * * 6520 5050 * 1868 * 2012 6883 * * * * * * 1627 * * 41 0 * * * * * * 5682 0 0 V 42 4764 * 4730 3523 6318 * * 2262 4895 2972 * 4985 * 4888 4277 * 2577 2699 * 5795 42 0 * * * * * * 5682 0 0 L 43 4369 * * * * * * 1091 * 3849 6195 * * * * * * 1325 * * 43 0 * * * * * * 5719 0 0 V 44 5189 5452 * 4611 * 7247 * 3086 4945 * * * * 5872 6973 4736 4054 668 * * 44 0 * * * * * * 5719 0 0 S 45 3257 * 4297 * * 5399 6907 * * * * * * * * 315 * * * 6859 45 0 * * * * * * 5719 0 0 D 46 3228 * 2369 2868 6771 5014 5522 * 5163 * * 3091 2381 4693 * 3880 5153 6973 * 5584 46 0 * * * * * * 5719 0 0 R 47 2621 5761 4262 2314 7034 5883 5934 5031 3937 4035 * 5270 * 3697 4209 3240 5325 4255 * 5168 47 0 * * * * * * 5719 0 0 F 48 * * * * 108 * * 6574 * 4018 * * * * * * * * * * 48 0 * * * * * * 5728 0 0 T 49 3056 * 4939 2141 * 5973 6857 4526 3533 5343 * 3836 * 4215 3676 2911 4397 4086 * * 49 0 * * * * * * 5728 0 0 G 50 5378 6662 3022 6394 * 577 * * 3909 * * 4131 * 6857 * 5916 6400 * * * 50 12 * 6910 * * * * 5728 0 0 E 51 7114 * * 4971 * * 6899 4040 1527 1920 2955 * * 3702 * * 6500 3976 * * 51 15 6599 * 0 * * 0 5725 1000 1000 R 52 5542 * 5923 * * * 6799 6675 6942 * 5816 3552 2906 6436 3745 1115 2729 * * * 52 0 * * * * * 0 5725 0 1000 F 53 5216 * * * 7321 * 5775 4243 2504 2147 4489 * 3466 5759 2210 5339 3901 6629 * 5483 53 0 * * * * * 0 5725 0 1000 L 54 5483 * * * 7164 * * 2158 * 1557 * * 5157 * * * 6665 1439 * * 54 0 * * * * * 0 5725 0 1000 N 55 2598 * 4707 2502 6665 6799 * 7177 2280 * 6701 4636 7062 1973 5403 5077 6586 6298 * * 55 0 * * * * 0 * 5725 0 1000 R 56 6205 7065 * * * * * 4885 4833 * * 6826 * 2229 638 4735 * 6984 * * 56 0 * * * * * * 5728 0 0 H 57 * * * 4953 * * 518 * * * * 5484 * 2189 * 6069 6311 * * * 57 0 * * * * * * 5728 0 0 R 58 * * * * * * * * 2830 * * * * 1905 756 * * * * * 58 0 * * * * * * 5728 0 0 M 59 3913 * * 6069 * * 7165 4241 3134 1573 2258 6351 * 4301 4379 5767 4506 * 5252 * 59 0 * * * * * * 5728 0 0 I 60 * * * * * * * 1910 * 4747 5386 * * * * * * 572 * * 60 0 * * * * * * 5728 0 0 Y 61 * * * * 5220 * 3718 6895 4784 5279 5185 1722 * 4952 * * * 6634 * 1140 61 0 * * * * * * 5728 0 0 S 62 2378 * 3108 3185 * 4264 6196 * 2425 * 5896 3890 * 3778 6236 3038 4734 * * * 62 0 * * * * * * 5728 0 0 T 63 1854 3453 * * * 6390 * 2923 6611 2262 5757 * 3756 6462 * 4779 4964 3629 5925 * 63 14 * 6696 * * * * 5728 0 0 L 64 6187 * * * 3929 * * 3512 * 405 6990 * * * * * * 3844 * * 64 23 5970 * 0 * 0 * 5721 1695 1000 A 65 2628 * 3818 3350 5590 3216 5733 5997 2216 * 4985 5321 * 4298 4531 3503 5236 6903 6928 6775 65 49 5925 5875 0 * * * 5728 1000 0 E 66 3512 * 1897 1894 5316 * 4495 * 3510 * * 5692 3441 5839 * 4759 5666 5532 * 6591 66 61 4924 6871 0 * 923 1081 5713 1723 1621 E 67 5938 * 5821 1118 5157 6464 3699 4467 4955 3142 6620 * 6678 4847 6096 6863 * 5172 6652 3600 67 10 7149 * 0 * 939 1064 5722 1000 1651 L 68 * * * * 2592 * * 1883 * 1697 2328 6639 * * 6718 * * 4803 * * 68 141 4269 4595 622 1513 0 * 5724 2616 1000 S 69 2792 * 3363 4766 * 3981 6576 6915 2126 * * 4663 3183 3648 4406 3614 4914 6885 * 6545 69 188 5081 3434 1448 658 0 * 5713 1878 2498 T 70 4694 6730 3605 4122 * 2339 6557 * 3554 4510 * 2932 * 4615 5039 2887 3403 * * 4539 70 164 4957 3737 961 1040 0 * 5691 2009 3042 T 71 5660 * 6254 3259 6321 1484 4582 * 3052 * * 5041 4631 3222 3715 6531 3935 * * * 71 290 2662 5382 0 * 0 * 5676 3931 3004 V 72 * * * * * * * 1020 * 1868 4212 * * * * * * 2630 5862 * 72 17 6445 * 0 * 0 * 5712 1000 1635 H 73 * * * * * * 55 * 5921 * * * * * * * * * * 5587 73 33 * 5484 * * * * 5722 0 0 A 74 271 * * * * 4041 * * * * * * * * * 3178 * * * * 74 0 * * * * * 0 5637 0 1000 L 75 * * * * 3925 * * 2366 * 723 6575 * * * * * * 3138 * 6602 75 22 6018 * 0 * * 0 5630 1528 1000 A 76 2863 * * 4287 * 5884 6104 6627 * * * 6693 * 2868 5040 1270 2490 * * * 76 0 * * * * 0 * 5630 0 1000 L 77 * 6062 * * 5057 * * 1163 * 1973 2747 * 7438 4886 * * * 3942 * * 77 27 6354 7258 0 * * * 5715 1334 0 H 78 6671 * 5579 4452 * * 3370 6230 1296 5472 6919 4692 * 3603 3681 4182 4123 5403 * 4626 78 30 5612 * 0 * * 0 5607 1431 1000 T 79 1707 3654 * * * * * * * 3113 * * 6199 * * 5173 1129 * * * 79 12 * 6895 * * 0 * 5582 0 1000 Y 80 4713 * 6815 * 3103 * 6726 5496 2620 3436 4451 6388 * 4756 3612 5774 * 7179 3785 1858 80 0 * * * * * 0 5571 0 1000 T 81 3083 * 6735 * * * * 6343 * * * 5401 4573 * * 3609 570 5051 * 6833 81 0 * * * * * 0 5571 0 1000 I 82 5083 * * 4878 * * * 5069 4425 4381 * 6179 731 5496 * 4856 4180 3576 * * 82 0 * * * * * 0 5508 0 1000 K 83 2432 * 2575 1754 5311 5341 * 5861 4575 5042 * 4769 * 5442 6491 3131 6032 * * 6515 83 0 * * * * * 0 5499 0 1000 E 84 6536 * 6334 557 * * * * 4692 * * * 6398 2019 * * * * * * 84 26 * 5815 * * * 0 5477 0 1000 W 85 4778 * * 6093 4004 * * 6184 5874 * * * * 5858 * * * 5085 783 2133 85 14 * 6728 * * 1032 968 5366 0 1481 E 86 3102 * 3829 2282 * * 5662 * 2529 * * 2795 * 2685 4953 3893 6029 * * * 86 40 6214 6188 0 * 956 1046 5335 1000 1476 G 87 2685 * 5254 3111 * 4280 * * 1843 5763 * 4162 6601 3567 3229 3729 5554 * * * 87 50 * 4886 * * 0 * 5348 0 1542 L 88 5153 * 4360 4054 5948 * 5663 4335 2057 3120 * 5790 5421 2130 4718 3600 6042 5898 * * 88 26 * 5789 * * 985 1015 5346 0 1607 Q 89 3481 * 5957 5500 * 2875 * 6060 1554 4585 * 3037 5271 2546 * * 5658 * * * 89 122 4179 5268 878 1133 864 1150 5212 1603 1527 D 90 * * 3092 3375 * 3390 * * 1846 * * 2823 5936 2739 5734 3531 * * * * 90 45 * 5032 * * 1115 893 5047 0 1472 T 91 3154 * * 4173 * 5592 * * 2085 5749 * 3097 3631 4563 * 2933 2626 5363 * * 91 74 * 4317 * * 955 1046 4805 0 1526 V 92 2953 * 4844 * 2940 * * 2399 4518 3771 * 5164 3583 * * 5005 4819 2176 * * 92 0 * * * * 0 * 4432 0 1580 F 93 4441 * 4985 * 2042 * 4450 * * * 4631 3538 1985 4868 4357 * 2542 * * * 93 0 * * * * * * 4390 0 0 A 94 3058 * 2029 4759 * * * * 4777 3645 * 3246 3444 3500 4705 4792 3623 4634 * * 94 50 * 4879 * * * * 4296 0 0 S 95 * * * * * * * * 4335 * * 4753 3627 4223 4239 567 4294 * * * 95 0 * * * * 0 * 4285 0 1000 P 96 3508 * * * * * * * * * * * 344 * * * 4577 3605 * * 96 0 * * * * * * 4208 0 0 P 97 2274 * 4663 * * * * * 4214 3359 * 2954 1974 * * 2514 4512 * * * 97 0 * * * * * * 4208 0 0 C 98 * 0 * * * * * * * * * * * * * * * * * * 98 0 * * * * * * 3785 0 0 R 99 3960 * * * * * * * 2724 1376 3970 * * 2887 2862 3997 * * * * 99 0 * * * * * * 3429 0 0 G 100 * * * * * 0 * * * * * * * * * * * * * * 100 0 * * * * * * 3116 0 0 A 101 3530 * * * * 293 * 3359 * * * * * * * * * * * * 101 0 * * * * * * 2930 0 0 G 102 * * * * * 1749 * * * * * * * * * 509 * * * * 102 0 * * * * * * 2849 0 0 S 103 * * * * * * * * 358 * * * * * 3208 3165 * * * * 103 0 * * * * * * 2749 0 0 I 104 1358 * * * * * * 2332 * * * 2380 * * * * * 2189 * * 104 0 * * * * * * 2365 0 0 A 105 0 * * * * * * * * * * * * * * * * * * * 105 0 * * 0 * * * 1745 0 0 //