BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (105 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P76406 Uncharacterized protein yegR n=57 Tax=Enterobact... 216 2e-55 UniRef50_A6V0T7 Putative lipoprotein n=1 Tax=Pseudomonas aerugin... 80 2e-14 UniRef50_C0VL28 Lipoprotein n=4 Tax=Gammaproteobacteria RepID=C0... 65 5e-10 >UniRef50_P76406 Uncharacterized protein yegR n=57 Tax=Enterobacteriaceae RepID=YEGR_ECOLI Length = 105 Score = 216 bits (549), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 105/105 (100%), Positives = 105/105 (100%) Query: 1 MKKIAAISLISIFIMSGCAVHNDETSIGKFGLAYKSNIQRKLDNQYYTEAEASLARGRIS 60 MKKIAAISLISIFIMSGCAVHNDETSIGKFGLAYKSNIQRKLDNQYYTEAEASLARGRIS Sbjct: 1 MKKIAAISLISIFIMSGCAVHNDETSIGKFGLAYKSNIQRKLDNQYYTEAEASLARGRIS 60 Query: 61 GAENIVKNDATHFCVTQGKKMQIVELKTEGVGLHGVARLTFKCGE 105 GAENIVKNDATHFCVTQGKKMQIVELKTEGVGLHGVARLTFKCGE Sbjct: 61 GAENIVKNDATHFCVTQGKKMQIVELKTEGVGLHGVARLTFKCGE 105 >UniRef50_A6V0T7 Putative lipoprotein n=1 Tax=Pseudomonas aeruginosa PA7 RepID=A6V0T7_PSEA7 Length = 107 Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 44/103 (42%), Positives = 62/103 (60%), Gaps = 2/103 (1%) Query: 2 KKIAAISLISIFIMSGCAVHNDETSIGKFGLAYKSNIQRKLDNQYYTEAEASLARGRISG 61 K I A ++ +I ++ GCAV ND T +G GL+Y ++I+ D Y E EAS RGRI G Sbjct: 5 KSIIAGAVFTI-VLQGCAVKNDRTELGFIGLSYHADIKEVADGLYRAEVEASPGRGRIRG 63 Query: 62 AENIVKNDATHFCVTQGKKMQIVELKTEG-VGLHGVARLTFKC 103 A+ DA +C Q K ++V+ +TE V ++GVARL F C Sbjct: 64 AKAAAYEDAVKYCEAQSKAARVVKERTESHVLINGVARLDFSC 106 >UniRef50_C0VL28 Lipoprotein n=4 Tax=Gammaproteobacteria RepID=C0VL28_9GAMM Length = 107 Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 1/96 (1%) Query: 9 LISIFIMSGCAVHNDETSIGKFGLAYKSNIQRKLDNQYYTEAEASLARGRISGAENIVKN 68 ++S + +GCAV ND+T + GL Y S I Y + EA+ GR GAE+ Sbjct: 11 ILSAILATGCAVQNDKTKVRGMGLTYNSEITTDQHGNYISAVEAAPLAGRKGGAESYAME 70 Query: 69 DATHFCVTQGKKMQIVELKTEG-VGLHGVARLTFKC 103 +AT +C + K ++I++ +T+ + ++GVA+LTF C Sbjct: 71 NATKYCNNKNKTVKIIKNQTKSHLLVNGVAKLTFTC 106 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P76406 Uncharacterized protein yegR n=57 Tax=Enterobact... 147 9e-35 UniRef50_A6V0T7 Putative lipoprotein n=1 Tax=Pseudomonas aerugin... 130 2e-29 UniRef50_C0VL28 Lipoprotein n=4 Tax=Gammaproteobacteria RepID=C0... 125 3e-28 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_P76406 Uncharacterized protein yegR n=57 Tax=Enterobacteriaceae RepID=YEGR_ECOLI Length = 105 Score = 147 bits (372), Expect = 9e-35, Method: Composition-based stats. Identities = 105/105 (100%), Positives = 105/105 (100%) Query: 1 MKKIAAISLISIFIMSGCAVHNDETSIGKFGLAYKSNIQRKLDNQYYTEAEASLARGRIS 60 MKKIAAISLISIFIMSGCAVHNDETSIGKFGLAYKSNIQRKLDNQYYTEAEASLARGRIS Sbjct: 1 MKKIAAISLISIFIMSGCAVHNDETSIGKFGLAYKSNIQRKLDNQYYTEAEASLARGRIS 60 Query: 61 GAENIVKNDATHFCVTQGKKMQIVELKTEGVGLHGVARLTFKCGE 105 GAENIVKNDATHFCVTQGKKMQIVELKTEGVGLHGVARLTFKCGE Sbjct: 61 GAENIVKNDATHFCVTQGKKMQIVELKTEGVGLHGVARLTFKCGE 105 >UniRef50_A6V0T7 Putative lipoprotein n=1 Tax=Pseudomonas aeruginosa PA7 RepID=A6V0T7_PSEA7 Length = 107 Score = 130 bits (326), Expect = 2e-29, Method: Composition-based stats. Identities = 44/104 (42%), Positives = 62/104 (59%), Gaps = 2/104 (1%) Query: 2 KKIAAISLISIFIMSGCAVHNDETSIGKFGLAYKSNIQRKLDNQYYTEAEASLARGRISG 61 K I A ++ +I ++ GCAV ND T +G GL+Y ++I+ D Y E EAS RGRI G Sbjct: 5 KSIIAGAVFTI-VLQGCAVKNDRTELGFIGLSYHADIKEVADGLYRAEVEASPGRGRIRG 63 Query: 62 AENIVKNDATHFCVTQGKKMQIVELKTEG-VGLHGVARLTFKCG 104 A+ DA +C Q K ++V+ +TE V ++GVARL F C Sbjct: 64 AKAAAYEDAVKYCEAQSKAARVVKERTESHVLINGVARLDFSCA 107 >UniRef50_C0VL28 Lipoprotein n=4 Tax=Gammaproteobacteria RepID=C0VL28_9GAMM Length = 107 Score = 125 bits (315), Expect = 3e-28, Method: Composition-based stats. Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 1/96 (1%) Query: 9 LISIFIMSGCAVHNDETSIGKFGLAYKSNIQRKLDNQYYTEAEASLARGRISGAENIVKN 68 ++S + +GCAV ND+T + GL Y S I Y + EA+ GR GAE+ Sbjct: 11 ILSAILATGCAVQNDKTKVRGMGLTYNSEITTDQHGNYISAVEAAPLAGRKGGAESYAME 70 Query: 69 DATHFCVTQGKKMQIVELKTEG-VGLHGVARLTFKC 103 +AT +C + K ++I++ +T+ + ++GVA+LTF C Sbjct: 71 NATKYCNNKNKTVKIIKNQTKSHLLVNGVAKLTFTC 106 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.320 0.133 0.349 Lambda K H 0.267 0.0406 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 328,067,364 Number of Sequences: 3077464 Number of extensions: 9920844 Number of successful extensions: 28464 Number of sequences better than 1.0e-01: 4 Number of HSP's better than 0.1 without gapping: 6 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 28454 Number of HSP's gapped (non-prelim): 7 length of query: 105 length of database: 1,040,396,356 effective HSP length: 73 effective length of query: 32 effective length of database: 815,741,484 effective search space: 26103727488 effective search space used: 26103727488 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 87 (38.1 bits)