Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	Q	K	T	L	F	T	K	S	A	L	A	V	A	V	A	L	I	S	T	Q	A	W	S	A	G	F	Q	L	N	E	F	S	S	S	G	L	G	R	A	Y	S	G	E	G	A	I	A	D	D	A	G	N	V	S	R	N	P	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?																		?	?	?	?		?		?		?	?			?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	I	T	M	F	D	R	P	T	F	S	A	G	A	V	Y	I	D	P	D	V	N	I	S	G	T	S	P	S	G	R	S	L	K	A	D	N	I	A	P	T	A	W	V	P	N	M	H	F	V	A	P	I	N	D	Q	F	G	W	G
Secondary structure
SS confidence
Disorder							?	?	?	?			?							?					?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	S	I	T	S	N	Y	G	L	A	T	E	F	N	D	T	Y	A	G	G	S	V	G	G	T	T	D	L	E	T	M	N	L	N	L	S	G	A	Y	R	L	N	N	A	W	S	F	G	L	G	F	N	A	V	Y	A	R	A	K	I
Secondary structure
SS confidence
Disorder																					?	?	?		?		?							?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		E	R	F	A	G	D	L	G	Q	L	V	A	G	Q	I	M	Q	S	P	A	G	Q	T	Q	Q	G	Q	A	L	A	A	T	A	N	G	I	D	S	N	T	K	I	A	H	L	N	G	N	Q	W	G	F	G	W	N	A	G	I	L	Y
Secondary structure
SS confidence
Disorder			?			?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		E	L	D	K	N	N	R	Y	A	L	T	Y	R	S	E	V	K	I	D	F	K	G	N	Y	S	S	D	L	N	R	A	F	N	N	Y	G	L	P	I	P	T	A	T	G	G	A	T	Q	S	G	Y	L	T	L	N	L	P	E	M	W
Secondary structure
SS confidence
Disorder																																?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		E	V	S	G	Y	N	R	V	D	P	Q	W	A	I	H	Y	S	L	A	Y	T	S	W	S	Q	F	Q	Q	L	K	A	T	S	T	S	G	D	T	L	F	Q	K	H	E	G	F	K	D	A	Y	R	I	A	L	G	T	T	Y	Y	Y
Secondary structure
SS confidence
Disorder																																				?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		D	D	N	W	T	F	R	T	G	I	A	F	D	D	S	P	V	P	A	Q	N	R	S	I	S	I	P	D	Q	D	R	F	W	L	S	A	G	T	T	Y	A	F	N	K	D	A	S	V	D	V	G	V	S	Y	M	H	G	Q	S	V
Secondary structure
SS confidence
Disorder																				?	?	?																																				?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
Sequence		K	I	N	E	G	P	Y	Q	F	E	S	E	G	K	A	W	L	F	G	T	N	F	N	Y	A	F
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?																		?		?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1t16 chain A Region: 26 - 446 Aligned: 421 Modelled: 421 Confidence: 100.0% Identity: 100% Fold: Transmembrane beta-barrels Superfamily: Porins Family: Outer membrane protein transport protein Phyre2 PDB 3dwo chain X Region: 26 - 446 Aligned: 407 Modelled: 408 Confidence: 100.0% Identity: 25% PDB header:membrane protein Chain: X: PDB Molecule:probable outer membrane protein; PDBTitle: crystal structure of a pseudomonas aeruginosa fadl homologue Phyre2 PDB 3brz chain A Region: 26 - 446 Aligned: 391 Modelled: 414 Confidence: 100.0% Identity: 17% PDB header:transport protein Chain: A: PDB Molecule:todx; PDBTitle: crystal structure of the pseudomonas putida toluene2 transporter todx Phyre2 PDB 3bry chain B Region: 28 - 446 Aligned: 373 Modelled: 404 Confidence: 100.0% Identity: 18% PDB header:transport protein Chain: B: PDB Molecule:tbux; PDBTitle: crystal structure of the ralstonia pickettii toluene2 transporter tbux Phyre2 PDB 2iah chain A Region: 133 - 446 Aligned: 294 Modelled: 314 Confidence: 99.6% Identity: 13% PDB header:membrane protein Chain: A: PDB Molecule:ferripyoverdine receptor; PDBTitle: crystal structure of the ferripyoverdine receptor of the outer2 membrane of pseudomonas aeruginosa bound to ferripyoverdine. Phyre2 PDB 1xkh chain C Region: 129 - 446 Aligned: 258 Modelled: 258 Confidence: 99.5% Identity: 14% PDB header:membrane protein Chain: C: PDB Molecule:ferripyoverdine receptor; PDBTitle: pyoverdine outer membrane receptor fpva from pseudomonas aeruginosa2 pao1 bound to pyoverdine Phyre2 PDB 1xkw chain A Region: 134 - 446 Aligned: 287 Modelled: 294 Confidence: 99.5% Identity: 12% PDB header:membrane protein Chain: A: PDB Molecule:fe(iii)-pyochelin receptor; PDBTitle: pyochelin outer membrane receptor fpta from pseudomonas2 aeruginosa Phyre2 PDB 2grx chain B Region: 104 - 446 Aligned: 328 Modelled: 343 Confidence: 99.5% Identity: 9% PDB header:metal transport Chain: B: PDB Molecule:ferrichrome-iron receptor; PDBTitle: crystal structure of tonb in complex with fhua, e. coli2 outer membrane receptor for ferrichrome Phyre2 PDB 1by5 chain A Region: 146 - 446 Aligned: 273 Modelled: 283 Confidence: 99.5% Identity: 11% Fold: Transmembrane beta-barrels Superfamily: Porins Family: Ligand-gated protein channel Phyre2 PDB 3qlb chain A Region: 144 - 446 Aligned: 258 Modelled: 267 Confidence: 99.4% Identity: 14% PDB header:metal transport Chain: A: PDB Molecule:enantio-pyochelin receptor; PDBTitle: enantiopyochelin outer membrane tonb-dependent transporter from2 pseudomonas fluorescens bound to the ferri-enantiopyochelin Phyre2 PDB 2hdi chain A Region: 290 - 446 Aligned: 126 Modelled: 157 Confidence: 99.2% Identity: 10% PDB header:protein transport,antimicrobial protein Chain: A: PDB Molecule:colicin i receptor; PDBTitle: crystal structure of the colicin i receptor cir from e.coli in complex2 with receptor binding domain of colicin ia. Phyre2 PDB 3csl chain B Region: 106 - 446 Aligned: 333 Modelled: 341 Confidence: 99.0% Identity: 10% PDB header:membrane protein/heme binding protein Chain: B: PDB Molecule:hasr protein; PDBTitle: structure of the serratia marcescens hemophore receptor hasr in2 complex with its hemophore hasa and heme Phyre2 PDB 3fhh chain A Region: 129 - 446 Aligned: 266 Modelled: 288 Confidence: 99.0% Identity: 11% PDB header:membrane protein Chain: A: PDB Molecule:outer membrane heme receptor shua; PDBTitle: crystal structure of the heme/hemoglobin outer membrane2 transporter shua from shigella dysenteriae Phyre2 PDB 2f1t chain B Region: 286 - 446 Aligned: 151 Modelled: 161 Confidence: 99.0% Identity: 15% PDB header:membrane protein Chain: B: PDB Molecule:outer membrane protein w; PDBTitle: outer membrane protein ompw Phyre2 PDB 1fep chain A Region: 66 - 446 Aligned: 369 Modelled: 370 Confidence: 99.0% Identity: 8% Fold: Transmembrane beta-barrels Superfamily: Porins Family: Ligand-gated protein channel Phyre2 PDB 2guf chain A domain 1 Region: 230 - 446 Aligned: 169 Modelled: 184 Confidence: 98.9% Identity: 8% Fold: Transmembrane beta-barrels Superfamily: Porins Family: Ligand-gated protein channel Phyre2 PDB 2x27 chain X Region: 283 - 446 Aligned: 160 Modelled: 164 Confidence: 98.9% Identity: 12% PDB header:membrane protein Chain: X: PDB Molecule:outer membrane protein oprg; PDBTitle: crystal structure of the outer membrane protein oprg from2 pseudomonas aeruginosa Phyre2 PDB 3qra chain A Region: 297 - 446 Aligned: 124 Modelled: 137 Confidence: 98.9% Identity: 15% PDB header:cell invasion Chain: A: PDB Molecule:attachment invasion locus protein; PDBTitle: the crystal structure of ail, the attachment invasion locus protein of2 yersinia pestis Phyre2 PDB 3efm chain A Region: 72 - 426 Aligned: 328 Modelled: 343 Confidence: 98.8% Identity: 12% PDB header:membrane protein Chain: A: PDB Molecule:ferric alcaligin siderophore receptor; PDBTitle: structure of the alcaligin outer membrane recepteur faua from2 bordetella pertussis Phyre2 PDB 1kmo chain A Region: 66 - 446 Aligned: 330 Modelled: 331 Confidence: 98.7% Identity: 14% Fold: Transmembrane beta-barrels Superfamily: Porins Family: Ligand-gated protein channel Phyre2 1 d1t16a_ 2 c3dwoX_ 3 c3brzA_ 4 c3bryB_ 5 c2iahA_ 6 c1xkhC_ 7 c1xkwA_ 8 c2grxB_ 9 d1by5a_ 10 c3qlbA_ 11 c2hdiA_ 12 c3cslB_ 13 c3fhhA_ 14 c2f1tB_ 15 d1fepa_ 16 d2gufa1 17 c2x27X_ 18 c3qraA_ 19 c3efmA_ 20 d1kmoa_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1t16a_ 100.0 100 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Outer membrane protein transport protein 2 c3dwoX_ 100.0 25 PDB header:membrane protein Chain: X: PDB Molecule:probable outer membrane protein; PDBTitle: crystal structure of a pseudomonas aeruginosa fadl homologue 3 c3brzA_ 100.0 17 PDB header:transport protein Chain: A: PDB Molecule:todx; PDBTitle: crystal structure of the pseudomonas putida toluene2 transporter todx 4 c3bryB_ 100.0 18 PDB header:transport protein Chain: B: PDB Molecule:tbux; PDBTitle: crystal structure of the ralstonia pickettii toluene2 transporter tbux 5 c2iahA_ 99.6 13 PDB header:membrane protein Chain: A: PDB Molecule:ferripyoverdine receptor; PDBTitle: crystal structure of the ferripyoverdine receptor of the outer2 membrane of pseudomonas aeruginosa bound to ferripyoverdine. 6 c1xkhC_ 99.5 14 PDB header:membrane protein Chain: C: PDB Molecule:ferripyoverdine receptor; PDBTitle: pyoverdine outer membrane receptor fpva from pseudomonas aeruginosa2 pao1 bound to pyoverdine 7 c1xkwA_ 99.5 12 PDB header:membrane protein Chain: A: PDB Molecule:fe(iii)-pyochelin receptor; PDBTitle: pyochelin outer membrane receptor fpta from pseudomonas2 aeruginosa 8 c2grxB_ 99.5 9 PDB header:metal transport Chain: B: PDB Molecule:ferrichrome-iron receptor; PDBTitle: crystal structure of tonb in complex with fhua, e. coli2 outer membrane receptor for ferrichrome 9 d1by5a_ 99.5 11 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Ligand-gated protein channel 10 c3qlbA_ 99.4 14 PDB header:metal transport Chain: A: PDB Molecule:enantio-pyochelin receptor; PDBTitle: enantiopyochelin outer membrane tonb-dependent transporter from2 pseudomonas fluorescens bound to the ferri-enantiopyochelin 11 c2hdiA_ 99.2 10 PDB header:protein transport,antimicrobial protein Chain: A: PDB Molecule:colicin i receptor; PDBTitle: crystal structure of the colicin i receptor cir from e.coli in complex2 with receptor binding domain of colicin ia. 12 c3cslB_ 99.0 10 PDB header:membrane protein/heme binding protein Chain: B: PDB Molecule:hasr protein; PDBTitle: structure of the serratia marcescens hemophore receptor hasr in2 complex with its hemophore hasa and heme 13 c3fhhA_ 99.0 11 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane heme receptor shua; PDBTitle: crystal structure of the heme/hemoglobin outer membrane2 transporter shua from shigella dysenteriae 14 c2f1tB_ 99.0 15 PDB header:membrane protein Chain: B: PDB Molecule:outer membrane protein w; PDBTitle: outer membrane protein ompw 15 d1fepa_ 99.0 8 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Ligand-gated protein channel 16 d2gufa1 98.9 8 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Ligand-gated protein channel 17 c2x27X_ 98.9 12 PDB header:membrane protein Chain: X: PDB Molecule:outer membrane protein oprg; PDBTitle: crystal structure of the outer membrane protein oprg from2 pseudomonas aeruginosa 18 c3qraA_ 98.9 15 PDB header:cell invasion Chain: A: PDB Molecule:attachment invasion locus protein; PDBTitle: the crystal structure of ail, the attachment invasion locus protein of2 yersinia pestis 19 c3efmA_ 98.8 12 PDB header:membrane protein Chain: A: PDB Molecule:ferric alcaligin siderophore receptor; PDBTitle: structure of the alcaligin outer membrane recepteur faua from2 bordetella pertussis 20 d1kmoa_ 98.7 14 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Ligand-gated protein channel 21 d1g90a_ not modelled 98.7 10 Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane protein 22 d1qj8a_ not modelled 98.6 15 Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane protein 23 c3nb3C_ not modelled 98.6 12 PDB header:virus Chain: C: PDB Molecule:outer membrane protein a; PDBTitle: the host outer membrane proteins ompa and ompc are packed at specific2 sites in the shigella phage sf6 virion as structural components 24 d1qjpa_ not modelled 98.5 12 Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane protein 25 c2k0lA_ not modelled 98.5 14 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr structure of the transmembrane domain of the outer2 membrane protein a from klebsiella pneumoniae in dhpc3 micelles. 26 c1po3A_ not modelled 98.5 12 PDB header:membrane protein Chain: A: PDB Molecule:iron(iii) dicitrate transport protein feca PDBTitle: crystal structure of ferric citrate transporter feca in2 complex with ferric citrate 27 d1p4ta_ not modelled 98.5 10 Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane protein 28 d2fgqx1 not modelled 98.5 11 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin 29 d1phoa_ not modelled 98.2 13 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin 30 d1osma_ not modelled 98.1 14 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin 31 c2wjqA_ not modelled 98.0 16 PDB header:transport protein Chain: A: PDB Molecule:probable n-acetylneuraminic acid outer membrane channel PDBTitle: nanc porin structure in hexagonal crystal form. 32 c3nsgA_ not modelled 97.9 18 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein f; PDBTitle: crystal structure of ompf, an outer membrane protein from salmonella2 typhi 33 c2jmmA_ not modelled 97.8 12 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr solution structure of a minimal transmembrane beta-2 barrel platform protein 34 c2iwvD_ not modelled 97.6 15 PDB header:ion channel Chain: D: PDB Molecule:outer membrane protein g; PDBTitle: structure of the monomeric outer membrane porin ompg in the2 open and closed conformation 35 d2zfga1 not modelled 97.5 14 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin 36 c3kvnA_ not modelled 97.4 12 PDB header:hydrolase Chain: A: PDB Molecule:esterase esta; PDBTitle: crystal structure of the full-length autotransporter esta from2 pseudomonas aeruginosa 37 c3a2rX_ not modelled 97.4 13 PDB header:membrane protein Chain: X: PDB Molecule:outer membrane protein ii; PDBTitle: crystal structure of outer membrane protein porb from neisseria2 meningitidis 38 c2x4mD_ not modelled 97.4 10 PDB header:hydrolase Chain: D: PDB Molecule:coagulase/fibrinolysin; PDBTitle: yersinia pestis plasminogen activator pla 39 d1uynx_ not modelled 97.0 15 Fold:Transmembrane beta-barrels Superfamily:Autotransporter Family:Autotransporter 40 c2qomB_ not modelled 96.8 11 PDB header:hydrolase Chain: B: PDB Molecule:serine protease espp; PDBTitle: the crystal structure of the e.coli espp autotransporter beta-domain. 41 d1i78a_ not modelled 96.3 13 Fold:Transmembrane beta-barrels Superfamily:OMPT-like Family:Outer membrane protease OMPT 42 d3prna_ not modelled 96.2 15 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin 43 c2lhfA_ not modelled 96.2 8 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein h1; PDBTitle: solution structure of outer membrane protein h (oprh) from p.2 aeruginosa in dhpc micelles 44 d2pora_ not modelled 95.4 12 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin 45 c3sljA_ not modelled 94.5 13 PDB header:protein transport Chain: A: PDB Molecule:serine protease espp; PDBTitle: pre-cleavage structure of the autotransporter espp - n1023a mutant 46 c2k4tA_ not modelled 93.3 14 PDB header:membrane protein,apoptosis Chain: A: PDB Molecule:voltage-dependent anion-selective channel PDBTitle: solution structure of human vdac-1 in ldao micelles 47 c2y0hA_ not modelled 92.9 9 PDB header:transport protein Chain: A: PDB Molecule:probable porin; PDBTitle: crystal structure of pseudomonas aeruginosa opdl 48 c3qq2C_ not modelled 92.9 9 PDB header:membrane protein/protein transport Chain: C: PDB Molecule:brka autotransporter; PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka 49 c2y0kA_ not modelled 90.6 13 PDB header:transport protein Chain: A: PDB Molecule:pyroglutatmate porin opdo; PDBTitle: crystal structure of pseudomonas aeruginosa opdo 50 c3aehB_ not modelled 83.9 11 PDB header:hydrolase Chain: B: PDB Molecule:hemoglobin-binding protease hbp autotransporter; PDBTitle: integral membrane domain of autotransporter hbp 51 c2gr7C_ not modelled 75.8 23 PDB header:membrane protein Chain: C: PDB Molecule:adhesin; PDBTitle: hia 992-1098 52 d2gr7a1 not modelled 75.8 23 Fold:Pili subunits Superfamily:Pili subunits Family:YadA C-terminal domain-like 53 d2gr8a1 not modelled 71.0 23 Fold:Pili subunits Superfamily:Pili subunits Family:YadA C-terminal domain-like 54 c2o4vA_ not modelled 59.4 12 PDB header:membrane protein Chain: A: PDB Molecule:porin p; PDBTitle: an arginine ladder in oprp mediates phosphate specific transfer across2 the outer membrane 55 c3emoA_ not modelled 57.8 23 PDB header:membrane protein/cell adhesion Chain: A: PDB Molecule:hia (adhesin); PDBTitle: crystal structure of transmembrane hia 973-1098 56 c2y0lA_ not modelled 56.7 16 PDB header:transport protein Chain: A: PDB Molecule:cis-aconitate porin opdh; PDBTitle: crystal structure of pseudomonas aeruginosa opdo 57 c2vqiA_ not modelled 28.3 12 PDB header:transport Chain: A: PDB Molecule:outer membrane usher protein papc; PDBTitle: structure of the p pilus usher (papc) translocation pore 58 c3rfzB_ not modelled 21.8 10 PDB header:cell adhesion/transport/chaperone Chain: B: PDB Molecule:outer membrane usher protein, type 1 fimbrial synthesis; PDBTitle: crystal structure of the fimd usher bound to its cognate fimc:fimh2 substrate 59 c3ohnA_ not modelled 21.5 11 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane usher protein fimd; PDBTitle: crystal structure of the fimd translocation domain 60 c2odjA_ not modelled 15.4 7 PDB header:membrane protein Chain: A: PDB Molecule:porin d; PDBTitle: crystal structure of the outer membrane protein oprd from pseudomonas2 aeruginosa

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0