BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (613 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q83BB6 RNA polymerase sigma factor rpoD n=106 Tax=Prote... 692 0.0 UniRef50_Q87DT7 RNA polymerase sigma factor rpoD n=599 Tax=cellu... 682 0.0 UniRef50_D1TN62 RNA polymerase sigma factor n=2 Tax=Burkholderia... 576 e-162 UniRef50_Q0EWY1 RNA polymerase sigma factor n=2 Tax=Bacteria Rep... 536 e-151 UniRef50_A9W0B8 RNA polymerase sigma factor n=15 Tax=Alphaproteo... 521 e-146 UniRef50_P33452 RNA polymerase sigma factor rpoD n=130 Tax=Prote... 521 e-146 UniRef50_Q1QBP8 RNA polymerase sigma factor n=8 Tax=Gammaproteob... 513 e-143 UniRef50_P52324 RNA polymerase sigma factor rpoD n=83 Tax=Bacter... 513 e-143 UniRef50_P46400 RNA polymerase sigma factor rpoD n=5 Tax=Alphapr... 509 e-142 UniRef50_P17531 RNA polymerase sigma factor rpoD n=70 Tax=Bacter... 508 e-142 UniRef50_B0U099 RNA polymerase sigma factor n=18 Tax=Francisella... 498 e-139 UniRef50_D0LP36 RNA polymerase sigma factor n=9 Tax=Bacteria Rep... 494 e-138 UniRef50_A9F3S6 RNA polymerase sigma factor n=21 Tax=Bacteria Re... 488 e-136 UniRef50_A0L5T1 RNA polymerase sigma factor n=3 Tax=Bacteria Rep... 471 e-131 UniRef50_Q13K37 RNA polymerase sigma factor n=1 Tax=Burkholderia... 470 e-131 UniRef50_A2PYK3 RNA polymerase sigma-subunit (Fragment) n=11 Tax... 467 e-130 UniRef50_Q3J9H0 RNA polymerase sigma factor n=2 Tax=Nitrosococcu... 457 e-127 UniRef50_Q1RKH7 RNA polymerase sigma factor rpoD n=19 Tax=Bacter... 451 e-125 UniRef50_A2WDQ1 RNA polymerase sigma factor n=10 Tax=Proteobacte... 447 e-124 UniRef50_C6XRI0 RNA polymerase sigma factor n=1 Tax=Hirschia bal... 442 e-122 UniRef50_P43344 RNA polymerase sigma factor rpoD (Fragment) n=31... 436 e-120 UniRef50_D1ASA0 RNA polymerase sigma factor n=9 Tax=Anaplasmatac... 421 e-116 UniRef50_P61540 RNA polymerase sigma factor rpoD n=20 Tax=Bacter... 406 e-111 UniRef50_C1F1D9 RNA polymerase sigma factor n=3 Tax=Acidobacteri... 390 e-106 UniRef50_B3CQ43 RNA polymerase sigma factor n=2 Tax=Orientia tsu... 379 e-103 UniRef50_C1SK63 RNA polymerase sigma factor n=1 Tax=Denitrovibri... 378 e-103 UniRef50_A8ZUC3 RNA polymerase sigma factor n=10 Tax=Deltaproteo... 376 e-102 UniRef50_C0R506 RNA polymerase sigma factor n=4 Tax=Wolbachia Re... 374 e-102 UniRef50_C0R030 RNA polymerase sigma factor n=2 Tax=Brachyspira ... 362 2e-98 UniRef50_A6G972 RNA polymerase sigma factor n=2 Tax=Bacteria Rep... 359 2e-97 UniRef50_Q5GSP3 RNA polymerase sigma factor n=6 Tax=Wolbachia Re... 358 5e-97 UniRef50_Q1LEA3 RNA polymerase sigma factor n=1 Tax=Cupriavidus ... 356 1e-96 UniRef50_B2V7P9 RNA polymerase sigma factor n=20 Tax=Bacteria Re... 355 3e-96 UniRef50_B2UM02 RNA polymerase sigma factor n=7 Tax=Verrucomicro... 353 8e-96 UniRef50_C0A975 RNA polymerase sigma factor n=1 Tax=Opitutaceae ... 352 3e-95 UniRef50_Q3AEW8 RNA polymerase sigma factor n=9 Tax=Clostridia R... 350 1e-94 UniRef50_B0TG57 RNA polymerase sigma factor n=11 Tax=Bacteria Re... 349 2e-94 UniRef50_O83506 RNA polymerase sigma factor rpoD n=11 Tax=Bacter... 348 3e-94 UniRef50_P0A4J0 RNA polymerase sigma factor rpoD n=39 Tax=Bacter... 346 2e-93 UniRef50_A6A8E7 RNA polymerase sigma factor RpoD (Fragment) n=25... 342 2e-92 UniRef50_Q99TT5 RNA polymerase sigma factor rpoD n=78 Tax=Firmic... 342 3e-92 UniRef50_C9KNX0 RNA polymerase sigma factor n=1 Tax=Mitsuokella ... 341 4e-92 UniRef50_Q04506 RNA polymerase sigma factor rpoD n=15 Tax=Bacter... 341 5e-92 UniRef50_P52328 RNA polymerase sigma factor rpoD n=191 Tax=Bacte... 340 7e-92 UniRef50_B8FTY1 RNA polymerase sigma factor n=3 Tax=Bacteria Rep... 338 2e-91 UniRef50_P52331 RNA polymerase sigma factor rpoD n=60 Tax=Bacter... 337 7e-91 UniRef50_D2RM33 RNA polymerase, sigma 70 subunit, RpoD subfamily... 332 3e-89 UniRef50_B9CNX8 RNA polymerase sigma factor n=3 Tax=Actinobacter... 331 5e-89 UniRef50_Q9Z7F0 RNA polymerase sigma factor rpoD n=15 Tax=Chlamy... 331 6e-89 UniRef50_C8R064 RNA polymerase sigma factor n=1 Tax=Desulfurivib... 329 2e-88 UniRef50_Q2GE94 RNA polymerase sigma factor n=2 Tax=Neorickettsi... 329 2e-88 UniRef50_B9DR67 RNA polymerase sigma factor (Fragment) n=1 Tax=E... 328 4e-88 UniRef50_Q1NY91 RNA polymerase sigma factor n=1 Tax=delta proteo... 327 1e-87 UniRef50_D1C1P9 RNA polymerase sigma factor n=6 Tax=Chloroflexi ... 325 4e-87 UniRef50_C4G0D3 RNA polymerase sigma factor n=1 Tax=Abiotrophia ... 323 1e-86 UniRef50_C7NC70 RNA polymerase sigma factor n=6 Tax=Bacteria Rep... 323 1e-86 UniRef50_C7GZY7 RNA polymerase sigma factor n=1 Tax=Eubacterium ... 323 1e-86 UniRef50_A5UQ16 RNA polymerase sigma factor n=3 Tax=Chloroflexi ... 322 2e-86 UniRef50_Q02AX1 RNA polymerase sigma factor n=2 Tax=Acidobacteri... 322 2e-86 UniRef50_C8NZE6 RNA polymerase sigma factor n=1 Tax=Erysipelothr... 322 3e-86 UniRef50_C4LJ07 RNA polymerase sigma factor n=115 Tax=Bacteria R... 321 6e-86 UniRef50_B9L102 RNA polymerase sigma factor n=2 Tax=Bacteria Rep... 317 6e-85 UniRef50_A5IMD4 RNA polymerase sigma factor n=24 Tax=Bacteria Re... 315 3e-84 UniRef50_P77994 RNA polymerase sigma factor rpoD n=6 Tax=Thermot... 315 4e-84 UniRef50_P0A603 RNA polymerase sigma factor rpoD n=66 Tax=Actino... 310 7e-83 UniRef50_Q6AQ51 RNA polymerase sigma factor n=1 Tax=Desulfotalea... 310 2e-82 UniRef50_Q9ZMY3 RNA polymerase sigma factor rpoD n=59 Tax=Epsilo... 308 3e-82 UniRef50_P52323 RNA polymerase sigma factor rpoD n=32 Tax=Borrel... 306 2e-81 UniRef50_A4JT57 RNA polymerase sigma factor n=14 Tax=Burkholderi... 305 3e-81 UniRef50_D2R6R0 RNA polymerase, sigma 70 subunit, RpoD subfamily... 305 5e-81 UniRef50_Q1J156 RNA polymerase sigma factor n=13 Tax=Bacteria Re... 303 1e-80 UniRef50_C9LM97 RNA polymerase sigma factor n=1 Tax=Dialister in... 301 4e-80 UniRef50_D2R2I8 RNA polymerase, sigma 70 subunit, RpoD subfamily... 300 9e-80 UniRef50_B4DC14 RNA polymerase sigma factor n=1 Tax=Chthoniobact... 298 5e-79 UniRef50_C1CW22 RNA polymerase sigma factor n=3 Tax=Deinococci R... 297 7e-79 UniRef50_P26683 RNA polymerase sigma factor rpoD n=19 Tax=cellul... 297 1e-78 UniRef50_Q3AWQ6 RNA polymerase sigma factor n=5 Tax=Chroococcale... 296 2e-78 UniRef50_B5YKM1 RNA polymerase sigma factor n=1 Tax=Thermodesulf... 296 2e-78 UniRef50_A6CE36 RNA polymerase sigma factor n=6 Tax=Planctomycet... 295 3e-78 UniRef50_Q47RL2 RNA polymerase sigma factor n=3 Tax=Bacteria Rep... 293 1e-77 UniRef50_P38023 RNA polymerase sigma factor rpoD1 n=7 Tax=cellul... 291 4e-77 UniRef50_B1WS32 RNA polymerase sigma factor n=5 Tax=Chroococcale... 291 5e-77 UniRef50_B2KBW8 RNA polymerase sigma factor n=2 Tax=Elusimicrobi... 290 2e-76 UniRef50_P74565 RNA polymerase sigma factor rpoD n=23 Tax=cellul... 289 2e-76 UniRef50_B7K1V2 RNA polymerase sigma factor n=13 Tax=cellular or... 288 5e-76 UniRef50_A8S2D4 RNA polymerase sigma factor n=2 Tax=Clostridium ... 288 5e-76 UniRef50_Q1ATP3 RNA polymerase sigma factor n=2 Tax=Rubrobacter ... 286 1e-75 UniRef50_UPI0001AF1456 RNA polymerase sigma factor n=2 Tax=Strep... 286 1e-75 UniRef50_Q2J784 RNA polymerase sigma factor n=6 Tax=Actinomyceta... 285 3e-75 UniRef50_A7NGG2 RNA polymerase sigma factor n=15 Tax=Chloroflexi... 285 3e-75 UniRef50_Q0RDY7 RNA polymerase sigma factor n=5 Tax=Actinomyceta... 284 7e-75 UniRef50_A5UPS4 RNA polymerase sigma factor n=4 Tax=Chloroflexac... 283 2e-74 UniRef50_D1CB24 RNA polymerase sigma factor n=1 Tax=Thermobaculu... 282 2e-74 UniRef50_A0LLA1 RNA polymerase sigma factor n=1 Tax=Syntrophobac... 280 1e-73 UniRef50_D1VBD5 RNA polymerase sigma factor n=1 Tax=Frankia sp. ... 280 1e-73 UniRef50_P18182 RNA polymerase principal sigma factor hrdA n=6 T... 280 2e-73 UniRef50_C7H329 RNA polymerase sigma factor n=2 Tax=Faecalibacte... 278 3e-73 UniRef50_B5YES0 RNA polymerase sigma factor n=2 Tax=Dictyoglomus... 274 6e-72 UniRef50_Q7NB90 RNA polymerase sigma factor n=2 Tax=Mycoplasma R... 273 1e-71 UniRef50_Q6AK94 RNA polymerase sigma factor n=3 Tax=Deltaproteob... 270 1e-70 UniRef50_P27785 RNA polymerase sigma factor rpoD n=102 Tax=Bacte... 269 2e-70 UniRef50_B0M9H5 RNA polymerase sigma factor n=1 Tax=Anaerostipes... 268 4e-70 UniRef50_B1VAH4 RNA polymerase sigma factor n=5 Tax=Acholeplasma... 266 1e-69 UniRef50_Q2SRY7 RNA polymerase sigma factor n=5 Tax=Mollicutes R... 266 2e-69 UniRef50_B8GCU9 RNA polymerase sigma factor n=5 Tax=Bacteria Rep... 263 1e-68 UniRef50_D2AWC8 RNA polymerase sigma factor n=3 Tax=Streptospora... 262 2e-68 UniRef50_A9BJC9 RNA polymerase sigma factor n=3 Tax=Thermotogace... 261 7e-68 UniRef50_A1S281 RNA polymerase sigma factor n=7 Tax=Bacteria Rep... 261 8e-68 UniRef50_UPI0001C317B8 RNA polymerase, sigma 70 subunit, RpoD su... 259 2e-67 UniRef50_C5B6H5 RNA polymerase sigma factor n=1 Tax=Methylobacte... 259 2e-67 UniRef50_Q2JLG8 RNA polymerase sigma factor n=3 Tax=Cyanobacteri... 258 5e-67 UniRef50_D1CD77 RNA polymerase sigma factor n=1 Tax=Thermobaculu... 257 1e-66 UniRef50_B5Y8E5 RNA polymerase sigma factor n=1 Tax=Coprothermob... 256 2e-66 UniRef50_A9AU99 RNA polymerase sigma factor n=2 Tax=Chloroflexi ... 255 3e-66 UniRef50_C1E4E8 Predicted protein n=2 Tax=Micromonas RepID=C1E4E... 254 7e-66 UniRef50_C7M2H3 RNA polymerase sigma factor n=1 Tax=Acidimicrobi... 254 7e-66 UniRef50_B5YKU3 RNA polymerase sigma factor n=1 Tax=Thermodesulf... 254 8e-66 UniRef50_B9L1K5 RNA polymerase sigma factor n=1 Tax=Thermomicrob... 253 1e-65 UniRef50_B1AIY8 RNA polymerase sigma factor n=15 Tax=Ureaplasma ... 250 1e-64 UniRef50_Q601Y8 RNA polymerase sigma factor n=8 Tax=Bacteria Rep... 248 4e-64 UniRef50_D1CF84 RNA polymerase sigma factor n=2 Tax=Bacteria Rep... 248 6e-64 UniRef50_B8HRG7 RNA polymerase sigma factor n=9 Tax=Cyanobacteri... 245 3e-63 UniRef50_A5IY54 RNA polymerase sigma factor n=2 Tax=Mycoplasma R... 244 6e-63 UniRef50_Q2JRK5 RNA polymerase sigma factor n=3 Tax=Cyanobacteri... 244 6e-63 UniRef50_Q1Q6A4 RNA polymerase sigma factor n=1 Tax=Candidatus K... 244 6e-63 UniRef50_B0RI86 RNA polymerase sigma factor n=2 Tax=Clavibacter ... 244 1e-62 UniRef50_B3PMH4 RNA polymerase sigma-70 factor n=1 Tax=Mycoplasm... 242 3e-62 UniRef50_Q6KI01 RNA polymerase sigma factor n=1 Tax=Mycoplasma m... 241 4e-62 UniRef50_Q03066 RNA polymerase sigma-C factor n=22 Tax=Cyanobact... 241 5e-62 UniRef50_D1J802 RNA polymerase sigma factor n=1 Tax=Mycoplasma h... 241 8e-62 UniRef50_D2ML80 RNA polymerase, sigma 70 subunit, RpoD family n=... 240 1e-61 UniRef50_UPI00016C4C50 transcription initiation factor sigma 70 ... 239 3e-61 UniRef50_P78022 RNA polymerase sigma factor rpoD n=2 Tax=Mycopla... 235 3e-60 UniRef50_C9XJA1 RNA polymerase sigma factor n=5 Tax=Clostridium ... 234 1e-59 UniRef50_Q39515 Chloroplast RNA polymerase sigma subunit n=1 Tax... 233 1e-59 UniRef50_Q116K5 RNA polymerase sigma factor n=1 Tax=Trichodesmiu... 231 9e-59 UniRef50_Q7U3K5 RNA polymerase sigma factor n=21 Tax=Cyanobacter... 230 1e-58 UniRef50_B3DXQ3 RNA polymerase sigma factor n=5 Tax=Chlamydiae/V... 229 2e-58 UniRef50_Q60012 RNA polymerase principal sigma factor hrdD n=27 ... 229 2e-58 UniRef50_B7K407 RNA polymerase sigma factor n=27 Tax=Cyanobacter... 229 3e-58 UniRef50_A9ALE2 RNA polymerase sigma factor n=19 Tax=Burkholderi... 228 5e-58 UniRef50_B1ZU80 RNA polymerase sigma factor n=6 Tax=Verrucomicro... 228 5e-58 UniRef50_B5JCN6 RNA polymerase sigma factor n=1 Tax=Verrucomicro... 227 9e-58 UniRef50_C5J5B6 DNA-directed RNA polymerase subunit D (Fragment)... 227 9e-58 UniRef50_Q2T2N0 RNA polymerase sigma factor n=32 Tax=pseudomalle... 227 1e-57 UniRef50_UPI0001699122 RNA polymerase, sigma 70 subunit, RpoD n=... 224 5e-57 UniRef50_UPI00003842B2 COG0568: DNA-directed RNA polymerase, sig... 224 6e-57 UniRef50_B9M4Z2 RNA polymerase sigma factor n=12 Tax=Desulfuromo... 224 8e-57 UniRef50_Q9ZTL1 RNA polymerase sigma factor n=1 Tax=Cyanidium ca... 224 9e-57 UniRef50_B2IZW2 RNA polymerase sigma factor n=14 Tax=Cyanobacter... 223 1e-56 UniRef50_D0LRC2 RNA polymerase sigma factor n=1 Tax=Haliangium o... 223 2e-56 UniRef50_Q0SG50 RNA polymerase sigma factor n=1 Tax=Rhodococcus ... 223 2e-56 UniRef50_B8LLW6 Putative uncharacterized protein n=2 Tax=Picea s... 223 2e-56 UniRef50_B3QZV6 RNA polymerase sigma factor n=1 Tax=Candidatus P... 223 2e-56 UniRef50_C6X620 RNA polymerase sigma factor RpoD n=68 Tax=Bacter... 223 2e-56 UniRef50_B0N062 Putative uncharacterized protein n=1 Tax=Alistip... 221 5e-56 UniRef50_A9GLY8 RNA polymerase sigma factor n=1 Tax=Sorangium ce... 221 6e-56 UniRef50_Q8S9C8 RNA polymerase sigma factor n=1 Tax=Cyanophora p... 220 1e-55 UniRef50_B7GEJ9 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 219 2e-55 UniRef50_B8G577 RNA polymerase sigma factor n=4 Tax=Chloroflexus... 219 2e-55 UniRef50_B2J5S6 RNA polymerase sigma factor n=13 Tax=Cyanobacter... 218 4e-55 UniRef50_C1SHQ6 RNA polymerase sigma factor n=1 Tax=Denitrovibri... 218 4e-55 UniRef50_Q9KHE4 RNA polymerase sigma factor n=14 Tax=Cyanobacter... 217 9e-55 UniRef50_A8RNE4 RNA polymerase sigma factor n=1 Tax=Clostridium ... 217 1e-54 UniRef50_Q4A5V6 RNA polymerase sigma factor n=3 Tax=Mycoplasma R... 217 1e-54 UniRef50_A6G031 RNA polymerase sigma factor n=1 Tax=Plesiocystis... 216 1e-54 UniRef50_D1CDN0 RNA polymerase sigma factor n=1 Tax=Thermobaculu... 215 4e-54 UniRef50_A9ESS1 RNA polymerase sigma factor n=1 Tax=Sorangium ce... 215 5e-54 UniRef50_Q31QR8 RNA polymerase sigma factor rpoD4 n=59 Tax=Cyano... 213 2e-53 UniRef50_B8HIZ1 RNA polymerase sigma factor n=1 Tax=Arthrobacter... 212 3e-53 UniRef50_A9G730 RNA polymerase sigma factor n=1 Tax=Sorangium ce... 212 4e-53 UniRef50_Q8S9C9 RNA polymerase sigma factor n=1 Tax=Cyanophora p... 211 4e-53 UniRef50_Q9KI19 RNA polymerase sigma factor rpoS n=6 Tax=Coxiell... 211 6e-53 UniRef50_P18184 RNA polymerase principal sigma factor hrdC n=5 T... 211 6e-53 UniRef50_A9B1P1 RNA polymerase sigma factor n=1 Tax=Herpetosipho... 211 7e-53 UniRef50_Q03065 RNA polymerase sigma-B factor n=68 Tax=cellular ... 211 9e-53 UniRef50_Q1ASS7 RNA polymerase sigma factor n=1 Tax=Rubrobacter ... 210 1e-52 UniRef50_D1A523 RNA polymerase sigma factor n=3 Tax=Actinomyceta... 210 1e-52 UniRef50_D1N7J7 RNA polymerase sigma factor n=1 Tax=Victivallis ... 209 2e-52 UniRef50_B9ZQZ1 RNA polymerase sigma factor n=1 Tax=Thioalkalivi... 209 2e-52 UniRef50_P35540 RNA polymerase sigma factor rpoS n=502 Tax=Prote... 208 4e-52 UniRef50_A6DK04 RNA polymerase sigma factor n=1 Tax=Lentisphaera... 208 4e-52 UniRef50_B7KCK0 RNA polymerase sigma factor n=2 Tax=Cyanothece R... 204 8e-51 UniRef50_D1C9N7 RNA polymerase sigma factor n=1 Tax=Sphaerobacte... 203 1e-50 UniRef50_Q5UEI3 RpoD (Fragment) n=23 Tax=Vibrio RepID=Q5UEI3_9VIBR 203 2e-50 UniRef50_Q56VT3 RNA polymerase sigma factor (Fragment) n=1 Tax=H... 202 2e-50 UniRef50_Q21TX3 RNA polymerase sigma factor n=1 Tax=Rhodoferax f... 202 3e-50 UniRef50_Q1AV06 RNA polymerase sigma factor n=3 Tax=Rubrobacter ... 202 3e-50 UniRef50_D0L243 RNA polymerase sigma factor n=1 Tax=Halothiobaci... 201 6e-50 UniRef50_B1K0Z2 RNA polymerase sigma factor n=2 Tax=Burkholderia... 200 1e-49 UniRef50_C5J5B5 DNA-directed RNA polymerase subunit D (Fragment)... 200 1e-49 UniRef50_A8ZNW0 RNA polymerase sigma factor n=1 Tax=Acaryochlori... 200 2e-49 UniRef50_Q8LK21 Chloroplast RNA polymerase sigma factor, c n=4 T... 200 2e-49 UniRef50_B1WQH6 RNA polymerase sigma factor n=5 Tax=Chroococcale... 199 2e-49 UniRef50_B8KI17 RNA polymerase sigma factor n=1 Tax=gamma proteo... 198 4e-49 UniRef50_Q9LD95 Sigma factor-like protein n=3 Tax=Eukaryota RepI... 198 6e-49 UniRef50_D0LPW6 RNA polymerase sigma factor n=1 Tax=Haliangium o... 197 7e-49 UniRef50_Q4BV73 RNA polymerase sigma factor n=1 Tax=Crocosphaera... 197 8e-49 UniRef50_A6CZ07 RNA polymerase sigma factor n=1 Tax=Vibrio shilo... 197 1e-48 UniRef50_B5WXT8 DNA-directed RNA polymerase subunit D (Fragment)... 197 1e-48 UniRef50_D1IHF7 Whole genome shotgun sequence of line PN40024, s... 197 1e-48 UniRef50_Q6A8Y3 RNA polymerase principal sigma factor HrdD n=2 T... 195 5e-48 UniRef50_B9L491 RNA polymerase sigma factor n=1 Tax=Thermomicrob... 194 6e-48 UniRef50_A5JEM2 Chloroplast RNA-polymerase sigma factor (Fragmen... 194 1e-47 UniRef50_A3ZWN2 RNA polymerase sigma factor n=1 Tax=Blastopirell... 193 2e-47 UniRef50_D1J322 Whole genome shotgun sequence of line PN40024, s... 192 2e-47 UniRef50_B6J9R7 RNA polymerase sigma factor RpoD n=1 Tax=Oligotr... 192 2e-47 UniRef50_Q2S172 RNA polymerase sigma-70 factor n=91 Tax=Bacteroi... 192 3e-47 UniRef50_Q3LW61 Sigma 2 transcription factor n=1 Tax=Bigelowiell... 191 6e-47 UniRef50_Q1Z2N9 RNA polymerase sigma factor n=9 Tax=Photobacteri... 191 8e-47 UniRef50_Q2JMC5 RNA polymerase sigma factor n=2 Tax=Synechococcu... 190 1e-46 UniRef50_Q73P62 RNA polymerase sigma factor n=2 Tax=Treponema Re... 190 1e-46 UniRef50_C6JJT6 RNA polymerase sigma factor n=5 Tax=Fusobacteriu... 190 1e-46 UniRef50_B1ZRN1 RNA polymerase sigma factor n=1 Tax=Opitutus ter... 189 2e-46 UniRef50_A4AF82 RNA polymerase sigma factor n=9 Tax=Bacteria Rep... 189 3e-46 UniRef50_A6FX97 RNA polymerase sigma factor n=2 Tax=Plesiocystis... 189 3e-46 UniRef50_D2R4L7 RNA polymerase, sigma 70 subunit, RpoD subfamily... 189 3e-46 UniRef50_C0QYD2 RNA polymerase sigma factor n=2 Tax=Brachyspira ... 189 3e-46 UniRef50_Q9KJT7 RNA polymerase sigma factor n=1 Tax=Peanut witch... 189 4e-46 UniRef50_A6GB19 RNA polymerase sigma factor n=1 Tax=Plesiocystis... 188 5e-46 UniRef50_C5J5B4 DNA-directed RNA polymerase subunit D (Fragment)... 188 5e-46 UniRef50_B3R1P5 RNA polymerase sigma factor n=78 Tax=Betaproteob... 187 1e-45 UniRef50_Q0F2K4 RNA polymerase sigma factor n=1 Tax=Mariprofundu... 187 1e-45 UniRef50_C4V1Y7 RNA polymerase sigma factor n=1 Tax=Selenomonas ... 186 2e-45 UniRef50_B9S0J0 RNA polymerase sigma factor rpoD, putative n=1 T... 186 2e-45 UniRef50_O22455 Sigma factor 2 n=8 Tax=core eudicotyledons RepID... 185 4e-45 UniRef50_C1SKA7 RNA polymerase sigma factor n=1 Tax=Denitrovibri... 185 4e-45 UniRef50_A5UVI3 RNA polymerase sigma factor n=1 Tax=Roseiflexus ... 183 1e-44 UniRef50_D0Z2H8 RNA polymerase sigma factor n=1 Tax=Photobacteri... 183 2e-44 UniRef50_B7FPT1 Predicted protein n=2 Tax=Bacillariophyta RepID=... 182 3e-44 UniRef50_C5RI15 RNA polymerase sigma factor n=1 Tax=Clostridium ... 181 1e-43 UniRef50_Q3JAH2 RNA polymerase sigma factor n=2 Tax=Nitrosococcu... 180 1e-43 UniRef50_C1A692 RNA polymerase sigma factor n=1 Tax=Gemmatimonas... 179 2e-43 UniRef50_C7LZN3 RNA polymerase sigma factor n=1 Tax=Acidimicrobi... 177 1e-42 UniRef50_Q39477 RNA polymerase sigma factor (Fragment) n=1 Tax=C... 176 2e-42 UniRef50_A3RRA4 RNA polymerase sigma factor rpoD n=1 Tax=Ralston... 176 2e-42 UniRef50_B4U904 RNA polymerase sigma factor n=5 Tax=Aquificales ... 175 4e-42 UniRef50_B8C8Z6 Predicted protein (Fragment) n=1 Tax=Thalassiosi... 174 1e-41 UniRef50_Q1PZV7 RNA polymerase sigma factor n=1 Tax=Candidatus K... 173 2e-41 UniRef50_Q3AYF6 Possible type II alternative RNA polymerase sigm... 171 9e-41 UniRef50_Q47D27 RNA polymerase sigma factor n=1 Tax=Dechloromona... 169 2e-40 UniRef50_C7LZI2 RNA polymerase sigma factor n=1 Tax=Acidimicrobi... 169 3e-40 UniRef50_A9SW01 Plastid sigma factor SIG1 n=2 Tax=Physcomitrella... 169 4e-40 UniRef50_B7G4Z9 Predicted protein (Fragment) n=2 Tax=Phaeodactyl... 168 5e-40 UniRef50_B7KLN9 RNA polymerase sigma factor n=1 Tax=Cyanothece s... 168 5e-40 UniRef50_Q7XXT0 Plastid sigma factor 2A n=13 Tax=Poaceae RepID=Q... 167 8e-40 UniRef50_Q3M2G3 Sigma-70 n=1 Tax=Anabaena variabilis ATCC 29413 ... 167 9e-40 UniRef50_P77996 RNA polymerase sigma factor n=1 Tax=Thermoanaero... 167 9e-40 UniRef50_C4ZMT1 RNA polymerase sigma factor n=1 Tax=Thauera sp. ... 167 1e-39 UniRef50_C9B9Y0 RNA polymerase sigma factor n=1 Tax=Enterococcus... 167 1e-39 >UniRef50_Q83BB6 RNA polymerase sigma factor rpoD n=106 Tax=Proteobacteria RepID=RPOD_COXBU Length = 698 Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/605 (59%), Positives = 445/605 (73%), Gaps = 16/605 (2%) Query: 12 LVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLAENT 71 L+ K +GYL + ++ + LP D D Q+E II + +MGI+V E PDAD L+L E+T Sbjct: 103 LLEEAKNKGYLVHEDLINLLPNDYADPSQMEGIIGRLTEMGIKVFEIPPDADSLLLEEDT 162 Query: 72 A--DEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQ 129 D++ E A+VL++ RTTDPVRMYMREMG+VELLTREGEI IAKRIE+GI Q Sbjct: 163 QSDDDEINEDVAEVLATET----RTTDPVRMYMREMGSVELLTREGEIVIAKRIEEGIRQ 218 Query: 130 VQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQED 189 V +V +YPE I +++YD + A E RLSDL+ GF D EE+ TA+ V E ++ Sbjct: 219 VMGAVVQYPELIEKFIKEYDTIVATEGRLSDLLIGFFD---EEE--STASPVAPEARDKE 273 Query: 190 LDDDEDEDEEDGDDDSADD--DNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQE 247 E DE+DG + +D+ ++ DP + ++ EL+ Y ++ IK G+ + Sbjct: 274 A---ETSDEDDGGEGGSDEFGESGPDPLITQQHMEELKKLYGRYQNAIKRYGKKAPATLK 330 Query: 248 EILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFT 307 L+E+F F+L KQF+ L +R M+ R QERLIM CV + K P+K FI F Sbjct: 331 HQKALAELFSTFKLSIKQFNRLTGQLRRMLRAARAQERLIMSYCVVKAKTPRKKFIASFP 390 Query: 308 GNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSI 367 NET+ W NK +++L S+E++RA + L Q+EE+ L I+++K+INRR++I Sbjct: 391 HNETNMKWLEQYKNENKEQAKRLEKYSKEIYRAQRNLAQLEEQNNLNIQEIKEINRRVAI 450 Query: 368 GEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKF 427 GEAK+RRAKKEM+EANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKF Sbjct: 451 GEAKSRRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKF 510 Query: 428 STYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERM 487 STYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQ+LQE G E TPEEL RM Sbjct: 511 STYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQILQETGIEATPEELGRRM 570 Query: 488 LMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDV 547 MPE+K+RKVLKIAKEPISMETPIG+DEDS+LGDFIED +E P+D AT+ L AT ++ Sbjct: 571 DMPEEKVRKVLKIAKEPISMETPIGEDEDSNLGDFIEDINMESPVDFATSAGLMEATREI 630 Query: 548 LAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVL 607 L+ LT REAKVLRMRFGIDMNTD+TLEEVGKQFDVTRERIRQIEAKALRKLRHPSR+E L Sbjct: 631 LSTLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRAEKL 690 Query: 608 RSFLD 612 SF++ Sbjct: 691 HSFIE 695 >UniRef50_Q87DT7 RNA polymerase sigma factor rpoD n=599 Tax=cellular organisms RepID=RPOD_XYLFT Length = 618 Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/615 (59%), Positives = 444/615 (72%), Gaps = 15/615 (2%) Query: 6 QSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDL 65 QS +K L+++G EQGYLTYAEVNDHLPED+VD DQIEDII MIN MGI+V E APDA+ L Sbjct: 9 QSDIKQLISKGLEQGYLTYAEVNDHLPEDLVDPDQIEDIIGMINGMGIEVHEVAPDAETL 68 Query: 66 MLAE-NTA----DEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA 120 +L E NT D+ AAE AA LS++++E GRTTDPVRMYMREMGTVELLTREGEI IA Sbjct: 69 LLNEGNTGNREVDDTAAEEAAAALSALDTEAGRTTDPVRMYMREMGTVELLTREGEIAIA 128 Query: 121 KRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATH 180 KRIE+G+++VQ ++ +P + LL +Y+ + + RL++++ GF D E++ ++ Sbjct: 129 KRIEEGLSEVQAALGAFPLSTELLLSEYELHKEGKRRLTEVVVGFNDLIEEDNSVTSSVD 188 Query: 181 VGSELSQEDLDDDEDEDEEDGDDDSADDDNSI---DPELAREKFAELRAQYVVTRDTIKA 237 V E E DEED D D+D + DP + L +Y + Sbjct: 189 VTDESIVE-------VDEEDDDSVGNDEDAPMIGPDPAEVASRIESLSTEYAKFKKLYAK 241 Query: 238 KGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKM 297 G H + ++ +F F+L D LV ++ M++ V+ ER ++ L KM Sbjct: 242 HGPEHKAVIKVREDVAAIFVTFKLSLPLTDLLVQQLQNMVNSVKDHERKVLHLATNVAKM 301 Query: 298 PKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQ 357 P+K+FI + N+T+ W AI + WS L D+ +++ Q +E+ LT+ Sbjct: 302 PRKDFIRSWENNQTNLEWVEDAIKRKQKWSSALRDIKDQITAEQQASIDLEKVNSLTLAD 361 Query: 358 VKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD 417 +K+INR M GEAKA +AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV Sbjct: 362 IKEINRMMVYGEAKASKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVC 421 Query: 418 KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE 477 KFE+RRG+KFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQ+ GRE Sbjct: 422 KFEHRRGFKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQQFGRE 481 Query: 478 PTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATT 537 TPEELA+ M MPEDKIRKV+KIAKEPISMETPIGDDEDSHLGDFIED +E P+D+ T Sbjct: 482 ATPEELAKEMDMPEDKIRKVMKIAKEPISMETPIGDDEDSHLGDFIEDPNVESPVDTTTN 541 Query: 538 ESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRK 597 +L +VLAGLT REAKVLRMRFGIDMNTD+TLEEVGKQFDVTRERIRQIEAKALRK Sbjct: 542 VNLSETVREVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK 601 Query: 598 LRHPSRSEVLRSFLD 612 LRHPSRSE LRSFLD Sbjct: 602 LRHPSRSEQLRSFLD 616 >UniRef50_D1TN62 RNA polymerase sigma factor n=2 Tax=Burkholderia sp. CCGE1002 RepID=D1TN62_9BURK Length = 663 Score = 576 bits (1484), Expect = e-162, Method: Compositional matrix adjust. Identities = 300/627 (47%), Positives = 410/627 (65%), Gaps = 31/627 (4%) Query: 6 QSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDL 65 Q Q++ L+ GKE+GYLT+AE+NDHLP++ + IE I+ NDMG+ V E+AP A+ L Sbjct: 47 QRQMRALIQLGKERGYLTHAEINDHLPDNFAQTAAIETIVSTFNDMGVAVYEQAPSAEVL 106 Query: 66 MLAENTA----DEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAK 121 ++ + T D+ A E A LSSV+SE GRTTDP RMYMREMG LLTR GEI+IAK Sbjct: 107 LMNDATPATMLDDQADEEAEVALSSVDSEFGRTTDPFRMYMREMGATGLLTRAGEIEIAK 166 Query: 122 RIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHV 181 RIE G++++ ++A P ++ +L ++EA E R+ +L+ G NAE + Sbjct: 167 RIEGGLHEMVQAIAVSPATVSAILLSAKQIEAGELRIDELVDGI---NAETE-------- 215 Query: 182 GSELSQEDLDDDEDEDEEDGDDDSADDDNSI--DPELAREK--------------FAELR 225 E S D ++ D ++ DDD D++S D + AR FA +R Sbjct: 216 SVEQSSTDFAEEPDTEQATADDDGGGDEHSEIEDRDTARSNEARLKQLTSDSLVIFARVR 275 Query: 226 AQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQER 285 + + A+G+ + + R + D L N+++ + +VR ER Sbjct: 276 ELFEQISGSQAAQGKGRVARADLREAIQRELAPIRFTARTIDRLCNAVQQQVAQVRAVER 335 Query: 286 LIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQ 345 I+++ V++C MP++ F+ F G ET W + A ++ + L + +KL Sbjct: 336 HILQIAVDRCGMPREKFVESFQGRETDLAWSESTAAASREYGAALERSLPAIQAEQRKLL 395 Query: 346 QIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLI 405 IE + GL ++Q+K INR+M E+K +AK+EM+EANLRLVISIAKKY NRG+ FLDLI Sbjct: 396 DIETKVGLPLQQLKKINRQMMAAESKMLQAKREMIEANLRLVISIAKKYVNRGMHFLDLI 455 Query: 406 QEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNR 465 QEGNIGLMKAVDKFEYRRG+KFSTYATWW+RQA+TRS+ADQARTIRIPVHM+E+INKLNR Sbjct: 456 QEGNIGLMKAVDKFEYRRGWKFSTYATWWVRQAVTRSLADQARTIRIPVHMMESINKLNR 515 Query: 466 ISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIED 525 ISR++LQ+ GRE P LA+RM +PE+K+R +LKI ++P+S+ETP+GD+ D+ L D IED Sbjct: 516 ISREILQQTGREAHPAVLAQRMEVPEEKVRAMLKIGRQPLSLETPVGDEADTTLSDVIED 575 Query: 526 TTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRE 585 P D+A +LRAA + L L+ REAKVLRMRFGID +D TLEE+GKQFD+TRE Sbjct: 576 PMATSPADAAVQANLRAAINTALDALSPREAKVLRMRFGIDTASDCTLEELGKQFDLTRE 635 Query: 586 RIRQIEAKALRKLRHPSRSEVLRSFLD 612 RIRQIE+KA+RKL HP+R+ LR FLD Sbjct: 636 RIRQIESKAMRKLMHPNRTAKLRPFLD 662 >UniRef50_Q0EWY1 RNA polymerase sigma factor n=2 Tax=Bacteria RepID=Q0EWY1_9PROT Length = 660 Score = 536 bits (1382), Expect = e-151, Method: Compositional matrix adjust. Identities = 313/664 (47%), Positives = 430/664 (64%), Gaps = 68/664 (10%) Query: 1 MEQNPQSQLKL-----LVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQV 55 M +N Q Q+ + L+ +GK+ G++TY ++N HLP +V +D++E +I + +MG++V Sbjct: 1 MSKNSQEQVTIRELGSLMAKGKQAGFITYDDLNKHLPGGLVSADRVEQLINVFTEMGVEV 60 Query: 56 M--EEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIG---RTTDPVRMYMREMGTVEL 110 + E AP M + ED+A L + S++G R DPVRMY+REMGTVEL Sbjct: 61 VDPERAPTGAYAMRKDRLRKEDSA------LRADTSQLGTVIRIDDPVRMYLREMGTVEL 114 Query: 111 LTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRV-----EA----EEARLSDL 161 LTREGEI+IA+RIE+G QV ++ P ++ +R+ EA EE D+ Sbjct: 115 LTREGEIEIARRIEEGRMQVHEAICLCPSTFREIMLLGERIIQIRDEAMELGEEPSFRDI 174 Query: 162 ITGFVDPNAEEDLAPTAT--HVGSELSQEDLDDDEDEDEE---DGD-------------D 203 I + +E + +A + +S+ + DDDE + E DG+ D Sbjct: 175 I------DVDEKVVNSAAIKEYENRMSRSEEDDDEPVETEPKLDGEQLTEAIKARTATPD 228 Query: 204 DSADDDNSIDPELAREK----FAELRAQYVVTRDTIKAKGRSHATAQEE--ILKLSEVFK 257 + + I E E+ F E + + D I+ K + ++ +L+ EV Sbjct: 229 GTPMQETVITKEEQLEEALFHFGEAKKLH---DDFIEVKKKLAKRPNDKALLLRSREVLD 285 Query: 258 QFRL-------VPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNE 310 L P+Q D LV + +++VR ER I +E +MP+K F+ F +E Sbjct: 286 AMLLELVSIPFSPRQLDQLVQRFKNAVEKVRRFERSIRDYALE-ARMPRKLFLETFPVDE 344 Query: 311 TSDTWFNAAIAMNK--PWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIG 368 T++ W + + NK W + +V+ ++ ++L+++E+ET + + ++KD+ R++++G Sbjct: 345 TNERWIDELMKQNKDAAWVTAIEEVTGKIKENQRRLRRVEQETEMGVVELKDVARKLTMG 404 Query: 369 EAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS 428 EAK R+AK+EM+EANLRLVISIAKKYTNRGL FLDLIQEGNIGLMKAV+KFE+RRGYKFS Sbjct: 405 EAKMRQAKREMIEANLRLVISIAKKYTNRGLGFLDLIQEGNIGLMKAVEKFEWRRGYKFS 464 Query: 429 TYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERML 488 TYATWWIRQAITRSIADQARTIRIPVHMIETINK+ R+SRQ+ QE+GREPTPEELAE + Sbjct: 465 TYATWWIRQAITRSIADQARTIRIPVHMIETINKMMRVSRQIAQEIGREPTPEELAEHLE 524 Query: 489 MPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVL 548 +P +K+ ++L++AKEP+S+ETPIGDDEDS LGDF+ED E PLDS +L AT +VL Sbjct: 525 LPVEKVLQILEVAKEPVSLETPIGDDEDSQLGDFVEDDNAENPLDSTIGAALAEATLEVL 584 Query: 549 AGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLR 608 LT RE KVLRMRFGI MNTD+TLEEVGKQF VTRERIRQIEAKALRKLRHPSRS+ L+ Sbjct: 585 ENLTDREQKVLRMRFGIGMNTDHTLEEVGKQFGVTRERIRQIEAKALRKLRHPSRSQKLK 644 Query: 609 SFLD 612 +F D Sbjct: 645 TFAD 648 >UniRef50_A9W0B8 RNA polymerase sigma factor n=15 Tax=Alphaproteobacteria RepID=A9W0B8_METEP Length = 718 Score = 521 bits (1342), Expect = e-146, Method: Compositional matrix adjust. Identities = 310/644 (48%), Positives = 399/644 (61%), Gaps = 43/644 (6%) Query: 7 SQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLM 66 + +K +V K++GY+TY E+N+ LP+ VD DQIED++ ++DMGI+V+E + Sbjct: 81 AAVKRMVKLAKKRGYVTYEEINEVLPDGQVDGDQIEDVLAQLDDMGIRVVEAEESEEAAP 140 Query: 67 LAENT---------------ADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELL 111 A+ A+ A A + RT DPVRMY+REMG+VELL Sbjct: 141 EAKANGEASEEEESTEGGEVAETSGTRAVAVATPTTREPTDRTDDPVRMYLREMGSVELL 200 Query: 112 TREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLI---TGFVDP 168 +REGEI IAKRIE G + + E P ++ D + + L D+I + P Sbjct: 201 SREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELVDGKVLLRDIIDLEATYAGP 260 Query: 169 NAEEDLAPTATHVGSELSQEDL-----DDDEDEDEEDGDDDSADDDNSIDPELAREKFAE 223 +A AP E S+E + +DED+ + + A + I P + E F Sbjct: 261 DARG--APQEAEAEGEESEEAEGAVPPEGGDDEDDMENNVSLAAMEAEIKPRVL-ETFDN 317 Query: 224 LRAQYVVTRDT------IKAKGRSHATAQEEILKLSEV-------FKQFRLVPKQFDYLV 270 + + Y R +K G + +AQ + K +E+ K L + + LV Sbjct: 318 IASNYRKLRKLQNEETELKTGGGTVTSAQTK--KQAELKDIVVTDVKSLSLNANRIEALV 375 Query: 271 NSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFN-AAIAMNKPWSEK 329 + + R+ + E +M+ E + + F+ + G E W + A K W Sbjct: 376 EQLYDINKRLISHEGRLMR-AAEHHGVARDEFLRHYQGYELDPNWMDRVATLGGKGWKNF 434 Query: 330 LHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVIS 389 + +V +++ + ETGL I + + I + GE +AR+AKKEM+EANLRLVIS Sbjct: 435 VERGGRQVADLREQILTLASETGLQIGEYRKIVAMVQKGEREARQAKKEMIEANLRLVIS 494 Query: 390 IAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQART 449 IAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQART Sbjct: 495 IAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQART 554 Query: 450 IRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMET 509 IRIPVHMIETINK+ R SRQML E+GREPTPEELAE++ MP +K+RKVLKIAKEPIS+ET Sbjct: 555 IRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLET 614 Query: 510 PIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNT 569 PIGD+EDSHLGDFIED + LP+D+A +LR T VLA LT RE +VLRMRFGI MNT Sbjct: 615 PIGDEEDSHLGDFIEDKNVVLPIDAAIQSNLRETTTRVLASLTPREERVLRMRFGIGMNT 674 Query: 570 DYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 D+TLEEVG+QF VTRERIRQIEAKALRKL+HPSRS LRSFLD+ Sbjct: 675 DHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDN 718 >UniRef50_P33452 RNA polymerase sigma factor rpoD n=130 Tax=Proteobacteria RepID=RPOD_AGRT5 Length = 684 Score = 521 bits (1341), Expect = e-146, Method: Compositional matrix adjust. Identities = 318/666 (47%), Positives = 403/666 (60%), Gaps = 75/666 (11%) Query: 9 LKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEA--------- 59 +K ++ K++GY+T E+N LP + V S+QIED + M++DMGI V+E+ Sbjct: 31 VKKMIKAAKKRGYVTMDELNSVLPSEEVTSEQIEDTMAMLSDMGINVIEDEDAEEAAPAE 90 Query: 60 --PDADDLMLAENTADEDAAEAAAQVLSSVESE--IGRTTDPVRMYMREMGTVELLTREG 115 D+D+ E + + A + L++ + + RT DPVRMY+REMG+VELL+REG Sbjct: 91 DDGDSDN----EESEGGELAPSGGTALATAKKKEPTDRTDDPVRMYLREMGSVELLSREG 146 Query: 116 EIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLI---TGFVDPNAEE 172 EI IAKRIE G + + E P L+ D + L ++I T + P A+ Sbjct: 147 EIAIAKRIEAGRETMISGLCESPLTFQALIIWRDELNEGTTLLREIIDLETTYSGPEAKA 206 Query: 173 DLAPTATHVGSELSQEDLDDDEDEDEED----------GDDDSAD-DDNSIDPELAREKF 221 AP S E ++ D EE GD+D D + + PE E Sbjct: 207 --APQFQ------SPEKIEADRKAAEEKEKTRRLRAPTGDEDVTDVGGDGLPPEEEEEDD 258 Query: 222 -----------AELRAQYVVTRDTIK------------------AKGRSHATAQEEILK- 251 AELR Q + T DTI A + ++ QE K Sbjct: 259 DESNLSLAAMEAELRPQVMETLDTIADTYKKLRKLQDQQVEARLACTGTLSSGQERRYKE 318 Query: 252 ----LSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFT 307 L K L + D LV + + R+ E +++L E + + +F+ + Sbjct: 319 LKDQLITAVKSLSLNQNRIDSLVEQLYDISKRLMQNEGRLLRLA-ESYGVKRDSFLEQYH 377 Query: 308 GNETSDTWFNAAIAMN-KPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMS 366 G E W + + + W E + S + Q++Q + ETG++I + + I + Sbjct: 378 GAELDPNWMKSITNLAARGWKEFAREESNTIREIRQEIQNLSTETGISIAEFRRIVSMVQ 437 Query: 367 IGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYK 426 GE +AR AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYK Sbjct: 438 KGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYK 497 Query: 427 FSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAER 486 FSTYATWWIRQAITRSIADQARTIRIPVHMIETINK+ R SRQML E+GREPTPEELAE+ Sbjct: 498 FSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEK 557 Query: 487 MLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHD 546 + MP +K+RKVLKIAKEPIS+ETP+GD+EDSHLGDFIED LP+D+A +LR T Sbjct: 558 LAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTR 617 Query: 547 VLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEV 606 VLA LT RE +VLRMRFGI MNTD+TLEEVG+QF VTRERIRQIEAKALRKL+HPSRS Sbjct: 618 VLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRK 677 Query: 607 LRSFLD 612 LRSFLD Sbjct: 678 LRSFLD 683 >UniRef50_Q1QBP8 RNA polymerase sigma factor n=8 Tax=Gammaproteobacteria RepID=Q1QBP8_PSYCK Length = 648 Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust. Identities = 260/404 (64%), Positives = 306/404 (75%) Query: 210 NSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYL 269 + IDPE R + E+ ++ + + GR A A E +L+ F +L + D + Sbjct: 244 SGIDPEEVRLRLEEIEHLFIKAKQALLDYGRGSAQANEAYEQLASRFMMLKLNNRLSDQV 303 Query: 270 VNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEK 329 + M + D VR ER IM+L + + +MP++ F F NET+ W I ++ Sbjct: 304 MAIMHDVYDDVRKHERQIMRLVIRRGRMPREEFRKTFPSNETNVDWLIERIKGKPAFAAT 363 Query: 330 LHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVIS 389 L V+++V + ++ E + + I +KD+ RRM+IGEAKARRAKKEMVEANLRLVIS Sbjct: 364 LEKVADDVILLQRAIRDYEHKLEMEIHDMKDVARRMAIGEAKARRAKKEMVEANLRLVIS 423 Query: 390 IAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQART 449 IAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQART Sbjct: 424 IAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQART 483 Query: 450 IRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMET 509 IRIPVHMIETINK+NR+SRQ+LQEMGREPTPEEL ER+ M E K+RKVLKIAKEPISMET Sbjct: 484 IRIPVHMIETINKINRVSRQLLQEMGREPTPEELGERLEMDEAKVRKVLKIAKEPISMET 543 Query: 510 PIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNT 569 PIGDDEDSHLGDFIED T+ P+D AT LR AT DVL LT REA+VL+MRFGIDM T Sbjct: 544 PIGDDEDSHLGDFIEDGTISSPVDDATAAGLREATRDVLGNLTEREARVLKMRFGIDMPT 603 Query: 570 DYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 D+TLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSE LRSFL++ Sbjct: 604 DHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEHLRSFLEN 647 >UniRef50_P52324 RNA polymerase sigma factor rpoD n=83 Tax=Bacteria RepID=RPOD_CAUCR Length = 652 Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust. Identities = 311/641 (48%), Positives = 404/641 (63%), Gaps = 51/641 (7%) Query: 7 SQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLM 66 + +K + + K +GY+T E+N LP + V D IED + M+++MG+ V+E DA++ Sbjct: 27 AGVKKFIKQAKARGYVTMDELNKVLPSEEVSPDAIEDTLAMLSEMGVNVVEAEEDAENAE 86 Query: 67 LAE-NTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIED 125 E T DE+ A+ ++ + RT DPVRMY+REMG+VELL+REGEI IAKRIE Sbjct: 87 GGEVATRDENTTVIASDKPAAYD----RTDDPVRMYLREMGSVELLSREGEIAIAKRIEA 142 Query: 126 GINQV---QCSVAEYPEAITYLLEQYDRVEAEEARLSDL------ITGFV-DPNAEEDLA 175 G + + C A EAI E+ + DL I G P AE+D Sbjct: 143 GRDTMIRGLCESALTFEAIMVWREELGTGRILLREVIDLEGTYAAINGVAAQPAAEDDEG 202 Query: 176 PTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSID--PELAREKFAELRAQYVVTRD 233 P E +DD+ E + +G + +DD P ++ + ELR + D Sbjct: 203 PA----------EPVDDEAGEAKAEGAEGEDEDDFDDGAGPTVSAME-GELREGVMAILD 251 Query: 234 TIKAKGRSHATAQEEILK-------LSEV---------------FKQFRLVPKQFDYLVN 271 I ++ + Q++++ LS+ K +L + + LV Sbjct: 252 AIASEFEAFRKLQDKLVGSRLKGEDLSDADRKAYEGLSATIIQHLKTLKLNNNRIEALVE 311 Query: 272 SMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLH 331 + + R+ E +++L + + + F+ + G+E + TW AM W++ + Sbjct: 312 QLYAINKRLIGLEGRLLRLA-DSYGISRGEFLKAYFGSELNPTWSEQVKAMGVRWTKFVE 370 Query: 332 DVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIA 391 + S+ V ++ + ETG+ I+ + I + + GE +AR+AKKEMVEANLRLVISIA Sbjct: 371 NDSQSVTDIRSEIAALATETGVPIDDYRRIVQTVQKGEREARQAKKEMVEANLRLVISIA 430 Query: 392 KKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIR 451 KKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIR Sbjct: 431 KKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIR 490 Query: 452 IPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPI 511 IPVHMIETINK+ R SRQML E+GREPTPEELAE++ MP +K+RKVLKIAKEPIS+ETPI Sbjct: 491 IPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPI 550 Query: 512 GDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDY 571 GD+EDSHLGDFIED LP+D+A +LR T VLA LT RE +VLRMRFGI MNTD+ Sbjct: 551 GDEEDSHLGDFIEDKNAILPIDAAIQSNLRETTTRVLASLTPREERVLRMRFGIGMNTDH 610 Query: 572 TLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 TLEEVG+QF VTRERIRQIEAKALRKL+HPSRS LRSFLD Sbjct: 611 TLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD 651 >UniRef50_P46400 RNA polymerase sigma factor rpoD n=5 Tax=Alphaproteobacteria RepID=RPOD_RHOCA Length = 674 Score = 509 bits (1310), Expect = e-142, Method: Compositional matrix adjust. Identities = 311/656 (47%), Positives = 397/656 (60%), Gaps = 56/656 (8%) Query: 6 QSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDL 65 Q+ +K ++ KE+GY+T ++N +P + V +QIED++ M+++MGI V+E + Sbjct: 25 QAAVKRMIGEAKERGYITIDQLNAVMPPETVSGEQIEDVMSMLSEMGINVVEGEEVEESE 84 Query: 66 MLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIED 125 + E A V + + RT DPVRMY+REMG+VELL+REGEI IAKRIE Sbjct: 85 GGEVVETGSGSREIA--VAGAAGETLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEA 142 Query: 126 GINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLI-------------------TGFV 166 G N + + E P + D + +EE L D+I G Sbjct: 143 GRNTMIAGLCESPLTFQAITIWRDELLSEEILLRDVIDLEATFGRSLDGDEGMEGMEGIE 202 Query: 167 DPNAEE-DLAPTATHVGSELSQEDLDDDEDEDEEDGDDDS---------ADDDNSIDPEL 216 P E DL T G+ + DE E + DG+ S + S+ Sbjct: 203 GPVVEGLDLE---TAEGAAPAARRPASDEPEYDADGNPISRIDEEEDDDDSSNMSLAAME 259 Query: 217 AREKFAELRAQYVVTRDTIKAKG----RSHATAQEE-ILKLSE--VFKQFR----LVPKQ 265 A K L ++ RD K R AT E+ ++E +++ R L+ + Sbjct: 260 AALKPKVLETLELIARDYAKLAEMQDLRMSATLNEDGTFSVAEEAAYQKLRSEIVLLVNE 319 Query: 266 FDYLVNSMRVMMDRVRTQERLIMKL------CVEQCKMPKKNFITLFTGNETSDTWFNAA 319 N + ++D++ R IM + + ++ ++ FI + G E TW + Sbjct: 320 LHLHNNRIEALIDQLYGINRKIMSIDSGMVKLADAARINRREFIDEYRGYELDPTWMDRM 379 Query: 320 IAMNKP---WSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAK 376 A KP W ++V ++ Q+ + G+ I + + I ++ GE +AR+AK Sbjct: 380 SA--KPARAWVTLFEKSRDKVEDLRHEMAQVGQYVGVDISEFRRIVNQVQKGEKEARQAK 437 Query: 377 KEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIR 436 KEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIR Sbjct: 438 KEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIR 497 Query: 437 QAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRK 496 QAITRSIADQARTIRIPVHMIETINKL R RQML E+GREPTPEELAE++ MP +K+RK Sbjct: 498 QAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKVRK 557 Query: 497 VLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREA 556 V+KIAKEPIS+ETPIGD+EDS LGDFIED LPLDSA E+L+ T VLA LT RE Sbjct: 558 VMKIAKEPISLETPIGDEEDSQLGDFIEDKNAILPLDSAIQENLKETTTRVLASLTPREE 617 Query: 557 KVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 +VLRMRFGI MNTD+TLEEVG+QF VTRERIRQIEAKALRKL+HPSRS LRSFLD Sbjct: 618 RVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD 673 >UniRef50_P17531 RNA polymerase sigma factor rpoD n=70 Tax=Bacteria RepID=RPOD_MYXXA Length = 708 Score = 508 bits (1309), Expect = e-142, Method: Compositional matrix adjust. Identities = 299/628 (47%), Positives = 415/628 (66%), Gaps = 34/628 (5%) Query: 1 MEQNP---QSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVME 57 +E++P + ++K L+ G+E+G+LTY EVND LP DIV SDQI+D++ M D I++++ Sbjct: 98 IEEDPVAERKEVKDLLAAGREKGFLTYDEVNDALPADIVSSDQIDDVMSMFGDNDIEIVD 157 Query: 58 EAPDADDLMLAEN-TADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGE 116 A + + T +E+ +A + G++ DPVR+Y+R+MG+V LLTREGE Sbjct: 158 AQKAAQNNEIKPTVTVEEEKEDADEDEKDEDDEPGGKSNDPVRLYLRKMGSVSLLTREGE 217 Query: 117 IDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAP 176 ++IAKRIEDG +V ++ A+ +L+ ++++ + R+ D+I + E Sbjct: 218 VEIAKRIEDGEKEVLRALLACKVAVEEILDIGNKLKTAKLRVRDVIKDAPEETQSEGAEE 277 Query: 177 TATHVG-----SELSQEDLDDDEDEDEE-DGDDDSADDDNSIDPELA-REKFAELRAQYV 229 VG ++L+Q +L+ E ++ + A D + ++ EL+ ++K E+R + V Sbjct: 278 APEEVGEGDAPAQLAQSELNKIEQICKQIERFRKFAQDCDVLEEELSSKKKLTEVRKKEV 337 Query: 230 VTRDTIKAKGRSHATAQEEI----LKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQER 285 ++EI K+ EV ++ RL KQ D +V +++ +++RV E Sbjct: 338 ----------------KQEIKDLRTKMMEVLEEMRLNKKQVDRIVINLKALIERVDKAED 381 Query: 286 LIMKLCVE-QCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKL 344 + L C M K+ L E + +N E+L + +V A++K+ Sbjct: 382 ELRDLERRYDCSM-KELRPQLKESRENPNIGKKLQKQLNL-TPEQLEVLDRDVRTAVRKI 439 Query: 345 QQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDL 404 +++EEE L +E ++ + +GE +A RAK E+VEANLRLV+SIAKKYTNRGLQFLDL Sbjct: 440 KKVEEEANLPVESLRRNYDAIRLGERRAERAKSELVEANLRLVVSIAKKYTNRGLQFLDL 499 Query: 405 IQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLN 464 IQEGNIGLMKAVDKFEY+RGYKFSTYATWWIRQAITR+IADQARTIRIPVHMIETINKL Sbjct: 500 IQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLI 559 Query: 465 RISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIE 524 R SR ++QE+GREPTPEE+AE+M +P DK+RKVLKIAKEPIS+ETPIG++EDSHLGDFIE Sbjct: 560 RTSRYLVQEIGREPTPEEIAEKMELPLDKVRKVLKIAKEPISLETPIGEEEDSHLGDFIE 619 Query: 525 DTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTR 584 D +L P D+ +L T VLA LT RE KVLRMRFGI +D+TLEEVG+ F+VTR Sbjct: 620 DKSLVSPADAVINMNLAEQTRKVLATLTPREEKVLRMRFGIGEKSDHTLEEVGQDFEVTR 679 Query: 585 ERIRQIEAKALRKLRHPSRSEVLRSFLD 612 ERIRQIEAKALRKLRHPSRS+ LRSF++ Sbjct: 680 ERIRQIEAKALRKLRHPSRSKRLRSFVE 707 >UniRef50_B0U099 RNA polymerase sigma factor n=18 Tax=Francisella RepID=B0U099_FRAP2 Length = 578 Score = 498 bits (1283), Expect = e-139, Method: Compositional matrix adjust. Identities = 290/611 (47%), Positives = 395/611 (64%), Gaps = 46/611 (7%) Query: 7 SQLKLLVTRGKEQGYLTYAEVNDHLPEDIV-DSDQIEDIIQMINDMGIQVMEEAPDADDL 65 S LK L+ GKE+GYLT A++ D LP D+ D + E+I ++ D GI V + P+ D+ Sbjct: 8 SDLKDLMVDGKERGYLTRADILDALPGDVSEDPKKYEEIEAILIDAGIDVYDRTPELDE- 66 Query: 66 MLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIED 125 D+D + + L ++ G+T+DP+RMYMREMG V+LL ++GE DIA RIE+ Sbjct: 67 -------DDDERKVSEANLDDLK---GKTSDPIRMYMREMGIVDLLDKKGETDIAIRIEE 116 Query: 126 GINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLA--PTATHVGS 183 G +V ++ YP + +E++ +E E+A VD +D+ P A ++ Sbjct: 117 GTTEVFSTILSYPIVVKTYIERFRELE-EKA---------VDYMTSQDIEDEPVAKYIRF 166 Query: 184 ELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHA 243 D++ +E+ +DD D ID + A E F L + ++ K S Sbjct: 167 NEIMAGFSDEQVTEEKVAEDDH---DEKIDTQRAYEFFVNLEKMFEEYQEKPNKKLYS-- 221 Query: 244 TAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFI 303 K+ + F+ RL LV+ +R+ RV+ ER I++LCVE+ K P++ FI Sbjct: 222 -------KIVKEFECLRLSTSHLQKLVDYIRLPYARVKEFERKILRLCVERSKTPRQEFI 274 Query: 304 TLFTGNETSDTWFNAAIAMNKPWSEKLHDVS-EEVHRALQKLQQIEEETGLTIEQVKDIN 362 ++ S W + + K + K D + +E+H +++ Q + + IE++K +N Sbjct: 275 KVYEIG--SIEWLPS---LTKKY--KFTDNTVKEIHNLTKQINQFQNLMMMKIEELKKVN 327 Query: 363 RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR 422 +S EAK +AKKEM+EANLRLV+S AKKYTNRGL FLD+IQEGNIGLMKAVDKF+YR Sbjct: 328 VEISKSEAKITQAKKEMIEANLRLVVSEAKKYTNRGLHFLDIIQEGNIGLMKAVDKFDYR 387 Query: 423 RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEE 482 +G+KFSTYATWWIRQAITRSIADQARTIR+PVHMIETINK+NRI RQ+LQE GRE T EE Sbjct: 388 KGFKFSTYATWWIRQAITRSIADQARTIRVPVHMIETINKVNRIKRQILQEKGREATEEE 447 Query: 483 LAERML-MPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLR 541 + E M +DK++K+L I+ PISME+PIGDDEDS +GDFIED P+++A E+LR Sbjct: 448 IIEYTPNMTKDKLKKILNISHTPISMESPIGDDEDSTVGDFIEDKNNYSPIEAANLENLR 507 Query: 542 AATHDVL-AGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 600 A +++ GLT REAKVL MRFGI MNTD+TLEEVGKQF+VTRERIRQIEAKALRKL+H Sbjct: 508 EAIKELIDTGLTEREAKVLMMRFGIGMNTDHTLEEVGKQFNVTRERIRQIEAKALRKLKH 567 Query: 601 PSRSEVLRSFL 611 PSRS L++FL Sbjct: 568 PSRSAFLKTFL 578 >UniRef50_D0LP36 RNA polymerase sigma factor n=9 Tax=Bacteria RepID=D0LP36_HALO1 Length = 697 Score = 494 bits (1273), Expect = e-138, Method: Compositional matrix adjust. Identities = 283/616 (45%), Positives = 391/616 (63%), Gaps = 46/616 (7%) Query: 10 KLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVME-------EAPDA 62 K L+ G+ +G++TY EVNDH+PED++ S+QI+ + + + GI +++ +AP Sbjct: 114 KKLIELGRSKGFVTYDEVNDHMPEDVISSEQIDSWLSALGEEGIDIVDSAASARKKAPAD 173 Query: 63 DDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKR 122 DD A + + + + RT+DPVRMY+R+MG+V LLTREGE++IAKR Sbjct: 174 DDDSSGGKVASLNDDKELEKEEEEEDYSYSRTSDPVRMYLRKMGSVSLLTREGEVEIAKR 233 Query: 123 IEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVG 182 IE+G ++ +V A+ L++ ++ +AR ++I + ++E D + Sbjct: 234 IEEGERRMLAAVLNSSVAVEELIDLGKQLADGKARAKEIIKDIDEEDSEVDEQWHVDRIQ 293 Query: 183 SELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSH 242 S +++ A D+ I +LA E++ + RD+I+A + Sbjct: 294 SVIAKVR--------------GRATDNEGIREKLADRTLGEVKKKKY--RDSIQANKEA- 336 Query: 243 ATAQEEILKLSEVFKQFRLVPKQFDYLVNSMR---VMMDRVRTQERLIMKLCVEQCKMPK 299 + E + +L D +V +++ V +DR T+ R + + MP Sbjct: 337 ---------MFEDLSELQLNKSVVDRMVANLKAIIVKLDRAETEIRAVEN----RLGMPA 383 Query: 300 KNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDV---SEEVHRALQKLQQIEEETGLTIE 356 K + S T + + K ++ + D + A +K++ +EEE ++E Sbjct: 384 KEIRKTLRDMKASATKTRS---VGKRFALTVDDFDAFEAAIKNAQKKIKVLEEECRSSVE 440 Query: 357 QVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV 416 +++ R MS GE A RAK E+VEANLRLV+SIAKKYTNRGLQFLDLIQEGNIGLMKAV Sbjct: 441 ELRQTFREMSDGERMAERAKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAV 500 Query: 417 DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGR 476 DKFEY+RGYKFSTYATWWIRQAITR+IADQARTIRIPVHMIETINKL R SR ++QE+GR Sbjct: 501 DKFEYKRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLVRTSRYLVQELGR 560 Query: 477 EPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSAT 536 EPTPEE+AERM +P DK+RKVLKIAKEPIS+ETPIG++EDSHLGDFIED ++ P D+ Sbjct: 561 EPTPEEIAERMELPLDKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKSVTSPSDAVI 620 Query: 537 TESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALR 596 + +L T VLA LT RE KVLRMRFGI +D+TLEEVG+ F+VTRERIRQIEAKALR Sbjct: 621 SVNLAEQTRKVLATLTPREEKVLRMRFGIGEKSDHTLEEVGQDFEVTRERIRQIEAKALR 680 Query: 597 KLRHPSRSEVLRSFLD 612 KLRHPSRS+ L++F++ Sbjct: 681 KLRHPSRSKRLKAFVE 696 >UniRef50_A9F3S6 RNA polymerase sigma factor n=21 Tax=Bacteria RepID=A9F3S6_SORC5 Length = 639 Score = 488 bits (1256), Expect = e-136, Method: Compositional matrix adjust. Identities = 288/616 (46%), Positives = 390/616 (63%), Gaps = 51/616 (8%) Query: 9 LKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLA 68 L+ LV GK +G+LTY EVND LP D+ DQ++D++ + D I++++ A + Sbjct: 62 LEKLVETGKSKGFLTYDEVNDALPADVA-PDQLDDVVGALGDEDIEIVDGATQVK--IAP 118 Query: 69 ENTADEDAAEAAAQVLSSVESE----IGRTTDPVRMYMREMGTVELLTREGEIDIAKRIE 124 + ADE+A E V E E ++ DPVRMY+R+MG+V LLTREGE++IAKRIE Sbjct: 119 KRIADEEAGEKKLVVTPDREEEDVDYYSKSNDPVRMYLRKMGSVSLLTREGEVEIAKRIE 178 Query: 125 DGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSE 184 G +V ++ + P A+ +++ +++ + R+ +LI +AE Sbjct: 179 IGEQKVNAAILDSPIAVREIIDLGEKLRKHKIRVKELIK-----DAE------------- 220 Query: 185 LSQEDLDDDEDEDEEDGDD------DSADDDNSIDPELAREKFAELRAQYVVTRDTIKAK 238 +DD++ DEE+ D D + EL E+ E++ + V R I + Sbjct: 221 ------NDDQEFDEEEADRRIIRLIDKVKRVDKKKAELLEER-KEVKTE--VRRKQIDVE 271 Query: 239 GRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKL--CVEQCK 296 + ATA+ L ++ RL + D +V ++ ++ +V E +L K Sbjct: 272 V-TQATAE-----LVTTLEEMRLNKRTIDKIVQKLKSLISKVEKAEAGATELERRTGLSK 325 Query: 297 MPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIE 356 K + GN + + + + E+L+D + A + L+++EEE + + Sbjct: 326 GELKRELIKVKGNRALEGRLAKKLNVQR---EELNDFESTIKNAQKGLKKVEEELNIDVA 382 Query: 357 QVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV 416 ++D + GE A RAK E+VEANLRLV+SIAKKYTNRGLQFLDLIQEGNIGLMKAV Sbjct: 383 AIRDTYENIREGERMAERAKAELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAV 442 Query: 417 DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGR 476 DKFEY+RGYKFSTYATWWIRQAITR+IADQARTIRIPVHMIETINKL R SR ++QE GR Sbjct: 443 DKFEYKRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQEYGR 502 Query: 477 EPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSAT 536 EPTPEE+AE+M +P DK+RKVLKIAKEPIS+ETPIG++EDSHLGDFIED ++ P ++ Sbjct: 503 EPTPEEIAEKMELPLDKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKSVISPAEAVI 562 Query: 537 TESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALR 596 +L T VL LT RE KVLRMRFGI +D+TLEEVG+ F+VTRERIRQIEAKALR Sbjct: 563 NMNLAEQTRKVLKTLTPREEKVLRMRFGIGEKSDHTLEEVGQDFEVTRERIRQIEAKALR 622 Query: 597 KLRHPSRSEVLRSFLD 612 KLRHPSRS+ L+SF+D Sbjct: 623 KLRHPSRSKQLKSFID 638 >UniRef50_A0L5T1 RNA polymerase sigma factor n=3 Tax=Bacteria RepID=A0L5T1_MAGSM Length = 683 Score = 471 bits (1212), Expect = e-131, Method: Compositional matrix adjust. Identities = 242/374 (64%), Positives = 287/374 (76%), Gaps = 3/374 (0%) Query: 240 RSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPK 299 R A Q ++ E+ + PKQ D LV ++ + VR QE+ I+ + V QC + K Sbjct: 311 RLLAEYQAHKARIVEIVAGIKFSPKQRDRLVERIKSYVAAVRAQEQKIITI-VTQCNVKK 369 Query: 300 KNFITLFTGNETSDTWF-NAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQV 358 FI FTGNE+ TW N A + PW ++L++ SE + A ++ IEEE G T+ + Sbjct: 370 PEFIEQFTGNESDTTWIQNFAKTRSAPW-KRLYEQSELICEAQLVIRSIEEEAGQTVADL 428 Query: 359 KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK 418 K N+++ GE +A +AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK Sbjct: 429 KKCNKKLMDGERRANQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK 488 Query: 419 FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP 478 FE+RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKL R SRQM+QEMGREP Sbjct: 489 FEWRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQMVQEMGREP 548 Query: 479 TPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTE 538 TPEE+AERM M +K+RKVLKIAKEPIS+ETP+GD+EDSHLGDFIED ++ P + A Sbjct: 549 TPEEIAERMSMSLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKSMLSPSEHAIMS 608 Query: 539 SLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKL 598 +LR T VL LT+RE VLRMRFGI + TD+TLEEVGKQF+VTRERIRQIEAKALRKL Sbjct: 609 NLRDTTGRVLQTLTSREEHVLRMRFGIGLPTDHTLEEVGKQFNVTRERIRQIEAKALRKL 668 Query: 599 RHPSRSEVLRSFLD 612 RHP+RS LRSFL+ Sbjct: 669 RHPTRSRKLRSFLE 682 Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 64/181 (35%), Positives = 106/181 (58%), Gaps = 27/181 (14%) Query: 9 LKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEE---------- 58 +K L+ RGKE+G+LTY EVND LP D+ ++ +ED++ ++++MGI ++++ Sbjct: 16 MKKLIARGKERGFLTYDEVNDVLPNDMTSAEDMEDVVGLLDNMGIDLIDDEREEGARPKS 75 Query: 59 --APDADDLMLAENTADED--------------AAEAAAQVLSSVES-EIGRTTDPVRMY 101 A +L ++ DE+ E + ++E ++G+T DPVRMY Sbjct: 76 RPAAGIGNLDSLDDDVDEEILGISDFDSEDDESDDEDGLRSDGAIEDIDLGKTDDPVRMY 135 Query: 102 MREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDL 161 +REMG+VELLTREGEI IAKRIE+G N+V ++ + P ++ +R+ A E L ++ Sbjct: 136 LREMGSVELLTREGEIAIAKRIEEGCNEVIATICDAPSTFNEVMMLAERLRAGEISLREV 195 Query: 162 I 162 + Sbjct: 196 L 196 >UniRef50_Q13K37 RNA polymerase sigma factor n=1 Tax=Burkholderia xenovorans LB400 RepID=Q13K37_BURXL Length = 628 Score = 470 bits (1209), Expect = e-131, Method: Compositional matrix adjust. Identities = 250/619 (40%), Positives = 381/619 (61%), Gaps = 7/619 (1%) Query: 1 MEQNPQS-QLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEA 59 MEQ+ + QL+ L+ GKE+G+LT+ E+ DHLP+ + +D IE I++ ND+GI V + A Sbjct: 9 MEQDSREMQLRALMKLGKERGFLTHTEIVDHLPDCVAQADAIEGIVKAFNDVGIAVRDFA 68 Query: 60 PDADDLML---AENTADEDAAE-AAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREG 115 P D L+L A+ +A +D AE A L+ SE G DP+R Y+REMG LLTREG Sbjct: 69 PTGDALLLGDAAQQSAPDDVAEDETATALTIAISEPGPAADPMRAYLREMGATPLLTREG 128 Query: 116 EIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLA 175 EI +A+RIE + ++ +A P + +L + DRV A E + DL+ GF++ +E L Sbjct: 129 EIAVARRIEACLREMLEVIALRPATVDAILSRADRVAAGELDIDDLVDGFLEQQPDEMLP 188 Query: 176 P--TATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRD 233 AT G+ S+ D E G ++ + + F+++R Q R Sbjct: 189 AMQGATAEGAAGSKADSGVPTSASESAGAIEADEARIARLTAGCNAIFSQVREQLASWRA 248 Query: 234 TIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVE 293 + + AQ ++ ++ Q R + L +R ++ +R ER +++L V Sbjct: 249 AVAGRTGQREEAQSTLVLIASTLGQIRFSARTIGELSADVRRAVEEIRGIERNVLRLAVN 308 Query: 294 QCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGL 353 Q M + F+ F G+ET W A A S L + +H +KL QIE GL Sbjct: 309 QGGMARDMFVETFVGSETDPEWLARAAAAAPACSAALMRCAPSIHSQQEKLAQIEAREGL 368 Query: 354 TIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLM 413 +++++K I+R+M++ + + + A++ M+EANLRLV+S+AKKY G+ LDL+QEGNIGLM Sbjct: 369 SLQELKWISRKMNVADRELQDARRAMIEANLRLVVSVAKKYVQSGMPLLDLVQEGNIGLM 428 Query: 414 KAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQE 473 KAVD+FEYRRG+KFSTYATWWIRQ+++R+IAD RTIR+PVHM + ++++ R++ +M QE Sbjct: 429 KAVDRFEYRRGFKFSTYATWWIRQSVSRAIADYGRTIRVPVHMADAMHRVKRVAGEMRQE 488 Query: 474 MGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLD 533 GR ELA R+ M E+K+R V ++ ++P+S++ PIG++ D+ LG+ +ED++ PLD Sbjct: 489 TGRPARSSELAARLGMSEEKVRSVQRVTRQPVSLDVPIGEEADTTLGEMVEDSSTLAPLD 548 Query: 534 SATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAK 593 + LR A L LT REAKV+++RFG+D +++TLEE+G QFDVTRER+RQI+ K Sbjct: 549 ALLQADLRVAIDAALGVLTPREAKVIKLRFGVDAVSEHTLEELGDQFDVTRERVRQIQNK 608 Query: 594 ALRKLRHPSRSEVLRSFLD 612 AL+KLRH L+++LD Sbjct: 609 ALQKLRHSDGISTLKNYLD 627 >UniRef50_A2PYK3 RNA polymerase sigma-subunit (Fragment) n=11 Tax=Enterobacteriaceae RepID=A2PYK3_ECOLX Length = 226 Score = 467 bits (1201), Expect = e-130, Method: Compositional matrix adjust. Identities = 223/226 (98%), Positives = 225/226 (99%) Query: 122 RIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHV 181 RIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHV Sbjct: 1 RIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHV 60 Query: 182 GSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRS 241 GSELSQEDLDDDEDEDEEDGDDD+ADDDNSIDPELAREKFAELRAQY+VTRDTIKAKGRS Sbjct: 61 GSELSQEDLDDDEDEDEEDGDDDTADDDNSIDPELAREKFAELRAQYIVTRDTIKAKGRS 120 Query: 242 HATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKN 301 HA AQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKN Sbjct: 121 HAAAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKN 180 Query: 302 FITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI 347 FITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI Sbjct: 181 FITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI 226 >UniRef50_Q3J9H0 RNA polymerase sigma factor n=2 Tax=Nitrosococcus oceani RepID=Q3J9H0_NITOC Length = 579 Score = 457 bits (1177), Expect = e-127, Method: Compositional matrix adjust. Identities = 259/610 (42%), Positives = 380/610 (62%), Gaps = 39/610 (6%) Query: 6 QSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMIND-MGIQVMEEAPDADD 64 Q +LK L+ +GK QG LT E+ D++ +++ DSD+ E + + + G+ EA D+ Sbjct: 7 QEELKRLILKGKAQGLLTEEELQDYIIQEVEDSDEAETMAHLFHHHQGLDEFNEALDST- 65 Query: 65 LMLAENTADEDAAEAAAQVLSSVESE-IGRTTDPVRMYMREMGTVELLTREGEIDIAKRI 123 +L +N+++E+ AE L ++E E G +D V YMREMG LLTRE EI +AK I Sbjct: 66 -LLLKNSSEEEIAE----TLPTLEGESTGAVSDMVYAYMREMGAHALLTREEEITLAKAI 120 Query: 124 EDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGS 183 E G++Q ++ P A+ L+ + V + RL D +TGF +P EE Sbjct: 121 ETGLSQSTEALGNCPAAVAELVRWAEEVATGKGRLKDWLTGFTEPEIEET---------- 170 Query: 184 ELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHA 243 + +DG + S E + + +R Y T+ +G + Sbjct: 171 -------------EIKDGKESSL--------EATSKHLSRVRTLYGNLEATLAQEGVASP 209 Query: 244 TAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFI 303 A+E KL+ F+ RL+P + + L ++ + + +TQE++I C+ Q +M +++F Sbjct: 210 RARELRRKLAREFQFLRLIPSRINQLTQLVQGWISKAQTQEQIIRSCCIHQGEMSQEDFW 269 Query: 304 TLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINR 363 F+ T W + +A ++ + L ++ + A L Q+E E GL ++++K I++ Sbjct: 270 HNFSSGTTHPQWLDDLLAHSRIDRQGLQTQAKTLRAAQAVLLQVEVEAGLPLDELKAIHQ 329 Query: 364 RMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRR 423 R+ + +A+RAK +MVEANLRLV+S+AKKY NRGL FLDLIQEGNIGLMKAVDKF+Y R Sbjct: 330 RLVRSQFQAQRAKAQMVEANLRLVVSVAKKYRNRGLTFLDLIQEGNIGLMKAVDKFDYHR 389 Query: 424 GYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEEL 483 GYKFSTYA WWIRQAITR+I DQ+RTIRIPVH++E ++KLNR S Q+ QE GRE PEEL Sbjct: 390 GYKFSTYAHWWIRQAITRAIDDQSRTIRIPVHVMEKLSKLNRASYQLRQEKGREGRPEEL 449 Query: 484 AERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAA 543 AER+ + E +I ++ +IAK+PIS+ETP+G DEDS LG+ +ED + P++ A T L+ Sbjct: 450 AERLALSEQQIHRMHEIAKQPISLETPLGKDEDSQLGELMEDEQVPNPMEVAITAGLQTG 509 Query: 544 THDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 603 +LA L+ REA+V+ MRFGI M+TD+TL EV +QFD++RERIRQIEA+AL KLR Sbjct: 510 AQQLLAALSPREAQVVAMRFGIGMDTDHTLGEVAQQFDLSRERIRQIEAQALGKLRRLGH 569 Query: 604 SEVLRSFLDD 613 S+ LR+FL+D Sbjct: 570 SKALRNFLED 579 >UniRef50_Q1RKH7 RNA polymerase sigma factor rpoD n=19 Tax=Bacteria RepID=RPOD_RICBR Length = 641 Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust. Identities = 271/618 (43%), Positives = 380/618 (61%), Gaps = 44/618 (7%) Query: 20 GYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLAENTADEDAAEA 79 G +TY ++N LP D ++I+ ++ ++ + +++ + DD + ++ E+ + Sbjct: 24 GSVTYNDINRALP-DGTSVEEIDKVMFRFSEAEVDILD--TNEDDAIKIDDMEMEEGFKI 80 Query: 80 AAQV-----LSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSV 134 + + + E IG T DPVR+Y+++MG V+LLTRE E++IAKRIE+G + ++ Sbjct: 81 STNIDHEPEDETEEENIGTTDDPVRLYLKDMGGVDLLTRENEVEIAKRIEEGRKTLIAAL 140 Query: 135 AEYPEAITYLLEQY-DRVEAEEARLSDLITGFVDPNAEEDLAPTATHVG-SELSQEDLDD 192 P A+ + Y D V L DLI DL H + S++D + Sbjct: 141 CRSPIAMDKFRKWYADLVNENNMLLRDLI----------DLESNMMHDDETSESEDDHNS 190 Query: 193 DEDEDEEDGDDDSADD-------DNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATA 245 D +E+E+D D D ++ + I P + E+ ++ ++ I+ K +A Sbjct: 191 DHEEEEQDHDHDHEENILSMSKVETQILPNII-ERMKKI--AFICEELLIETKKSFEKSA 247 Query: 246 QEEILKLSEVFK-----------QFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQ 294 +IL+ S+ + + K+ + +++ M + + +E +KL E+ Sbjct: 248 GPKILQNSKKYNDNLELLISEVSEIHFNSKRTEEILSEMYRINRDLINKETAFLKLA-EK 306 Query: 295 CKMPKKNFITLFTGNETSDTWFNAAIAMNKP-WSEKLHDVSEEVHRALQKLQQIEEETGL 353 + ++NF+ + G + W + K W E L S+ + + + +L IE TGL Sbjct: 307 YGITRQNFLDEYIGAVINAAWKEKMLKNKKAGWKELLTKESDYIDQMIAELSAIEINTGL 366 Query: 354 TIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLM 413 + K + + E + +AKK+M+EANLRLVISIAKKY NRGLQFLDLIQEGNIGLM Sbjct: 367 LVNDFKKLVNAIQKSERQTLQAKKDMIEANLRLVISIAKKYANRGLQFLDLIQEGNIGLM 426 Query: 414 KAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQE 473 KAVDKFEYRRGYKFSTYATWWIRQAITR+IADQARTIRIPVHMIETINK+ R SRQML E Sbjct: 427 KAVDKFEYRRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKIIRTSRQMLNE 486 Query: 474 MGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGD-DEDSHLGDFIEDTTLELPL 532 +G EPTP E+A R+ MP DK+RKV+KIAKEPIS+E P+GD D++S+LGDFIED P+ Sbjct: 487 LGYEPTPAEIAARLSMPIDKVRKVMKIAKEPISLENPVGDGDDNSYLGDFIEDKNAVAPI 546 Query: 533 DSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEA 592 D+A +LR T VLA LT RE +VLRMRFGI MNTD+TLEEVG+QF VTRERIRQIE+ Sbjct: 547 DAAIQSNLREVTTRVLATLTPREERVLRMRFGIGMNTDHTLEEVGQQFKVTRERIRQIES 606 Query: 593 KALRKLRHPSRSEVLRSF 610 KALRKL+HP RS+ L SF Sbjct: 607 KALRKLQHPIRSKKLNSF 624 >UniRef50_A2WDQ1 RNA polymerase sigma factor n=10 Tax=Proteobacteria RepID=A2WDQ1_9BURK Length = 773 Score = 447 bits (1149), Expect = e-124, Method: Compositional matrix adjust. Identities = 253/501 (50%), Positives = 336/501 (67%), Gaps = 18/501 (3%) Query: 8 QLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLML 67 +L+ L+ GKE+G+LTYAE+NDHLP++ +++ +E II NDMG+ V E+APDA+ L+L Sbjct: 186 KLRALIKLGKERGFLTYAEINDHLPDNFTETEALEGIIGTFNDMGVAVYEQAPDAETLLL 245 Query: 68 AEN----TADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRI 123 +N ++D++ E A LS+V+SE GRTTDPVRMYMREMGTVELLTREGEI+IAKRI Sbjct: 246 NDNAPAASSDDEVEEEAEVALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRI 305 Query: 124 EDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEED-----LAPTA 178 EDG+ + +++ P I +L +RV EE R+ +L+ G +DPNA + A A Sbjct: 306 EDGLRHMVMAISACPTTIADILAMAERVANEEIRVDELVDGLLDPNAADTDTDGFSAKEA 365 Query: 179 THVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAR---EKFAELRAQYVVTRDTI 235 + +E + +++E+E+E+D A + + L R EKFA + + R Sbjct: 366 EAIENEDEDAEEEEEEEEEEDDDGAAQATANAAQLEALKRASLEKFALISEWFDKMRRAF 425 Query: 236 KAKG---RSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCV 292 + +G +++ AQE I SE+ R + + L +++R +D VR ER I+ + V Sbjct: 426 EKEGYKSKAYLKAQETIQ--SELM-TIRFTARTVERLCDTLRAQVDEVRQVERQILHIVV 482 Query: 293 EQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETG 352 ++C MP+ FI F GNET W A P+S L + Q+L ++ Sbjct: 483 DKCGMPRSEFIARFPGNETDLDWAEKIAAEGHPYSAVLSRNIPAIREQQQRLLDLQARVV 542 Query: 353 LTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL 412 L ++ +K+ NR+M+ GE KAR+AK+EM EANLRLVISIAKKYTNRGLQFLDLIQEGNIGL Sbjct: 543 LPLKDLKETNRQMAAGELKARQAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL 602 Query: 413 MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQ 472 MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK+NRISRQ+LQ Sbjct: 603 MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQ 662 Query: 473 EMGREPTPEELAERMLMPEDK 493 E G EP P LAE+M MPE + Sbjct: 663 ETGLEPDPATLAEKMEMPETR 683 >UniRef50_C6XRI0 RNA polymerase sigma factor n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XRI0_HIRBI Length = 683 Score = 442 bits (1136), Expect = e-122, Method: Compositional matrix adjust. Identities = 229/370 (61%), Positives = 273/370 (73%), Gaps = 5/370 (1%) Query: 247 EEILKLS----EVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNF 302 EE +KL E K+ L + + LV + + R+ E +M+L + +P+K+F Sbjct: 314 EEYVKLQDDIIENLKKLHLNNARIETLVEQLYAINKRLMGLEGGLMRLA-DAHGVPRKSF 372 Query: 303 ITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDIN 362 + + G E W ++ W + + + +V ++ + +E G+ IE + I Sbjct: 373 LDNYFGTELEPDWGTRVSLISAKWKKFIAAETNKVEEMRSEISSLAQEMGVPIEDFRRIV 432 Query: 363 RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR 422 + GE +AR AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR Sbjct: 433 ATVQKGEREARVAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR 492 Query: 423 RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEE 482 RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK+ R RQML E+GREPTPEE Sbjct: 493 RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTQRQMLHEIGREPTPEE 552 Query: 483 LAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRA 542 LAE++ +P +KIRKVLKIAKEPIS+ETPIGDDEDS+LGDFIED LP+D+A +LR Sbjct: 553 LAEKLGLPLEKIRKVLKIAKEPISLETPIGDDEDSNLGDFIEDKMALLPVDAAIQSNLRE 612 Query: 543 ATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 602 T VLA LT RE +VLRMRFGI MNTD+TLEEVG+QF VTRERIRQIEAKALRKL+HPS Sbjct: 613 TTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPS 672 Query: 603 RSEVLRSFLD 612 RS LRSFLD Sbjct: 673 RSRKLRSFLD 682 >UniRef50_P43344 RNA polymerase sigma factor rpoD (Fragment) n=31 Tax=Bacteria RepID=RPOD_SERMA Length = 215 Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust. Identities = 211/215 (98%), Positives = 214/215 (99%) Query: 399 LQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIE 458 LQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIE Sbjct: 1 LQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIE 60 Query: 459 TINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSH 518 TINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSH Sbjct: 61 TINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSH 120 Query: 519 LGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGK 578 LGDFIEDTTLELPLDSAT+ESLR+ATHDVLAGLTARE KVLRMRFGIDMNTD+TLEEVGK Sbjct: 121 LGDFIEDTTLELPLDSATSESLRSATHDVLAGLTAREXKVLRMRFGIDMNTDHTLEEVGK 180 Query: 579 QFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 QFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD Sbjct: 181 QFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 215 >UniRef50_D1ASA0 RNA polymerase sigma factor n=9 Tax=Anaplasmataceae RepID=D1ASA0_ANACI Length = 649 Score = 421 bits (1081), Expect = e-116, Method: Compositional matrix adjust. Identities = 267/637 (41%), Positives = 381/637 (59%), Gaps = 61/637 (9%) Query: 9 LKLLVTRG-KEQGYLTYAEVNDHLPED-IVDSDQIEDIIQMINDMGIQVMEEA--PDADD 64 +K L+T+G K+ G +T+ +++D L +D +V S+ I++ I ++ D GI V+E++ +AD Sbjct: 40 VKNLITKGIKQGGVITFDDISDALSDDDVVSSESIDETISLLQDSGIGVLEQSDEEEADA 99 Query: 65 LMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIE 124 + EN A ++ E+ + L + G+T DP+RMY+ EM +VELL+REGEI+IAKRI+ Sbjct: 100 AVSEENAAKDEEDESGMRSL-----DFGQTDDPIRMYLCEMSSVELLSREGEIEIAKRIK 154 Query: 125 DGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSE 184 + S+ E P + + D + ++ L DLI +D N G E Sbjct: 155 SEKVNMLRSLIEAPMVLRTFMSWRDDLVNQQVMLRDLID--LDANYRGGAPQQEFEEGEE 212 Query: 185 LSQEDLDDDEDED--------------EEDGDDDSADDDNSIDPEL---------AREKF 221 + ++ D ED D G+ + ++++ P++ + EK Sbjct: 213 YGEREMADPEDSDVGHEGSDDDDEGEDASVGNASILEMESALLPKVISILDATIESAEKI 272 Query: 222 AELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVR 281 E++ + RD+ K +++ E I E+ Q +L + + + + Sbjct: 273 LEMKKR---KRDSGKCDEKAYNELHENIW---ELVSQMKLSDPAVLSVTQQIYNLSKAIA 326 Query: 282 TQERLIMKLCVEQCKMPKKNFI------TLFTGNETSDTWFNAAIAMNKPWSEKLHDVSE 335 +E +M L VE + +K+F+ T+F + S W N + + + L D+ Sbjct: 327 AEEVALMSL-VESYGVDRKSFLEAYNNNTVFEQADASPEWKN----LLEKEKKTLTDIQN 381 Query: 336 EVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYT 395 +V +L E+ G V I + E A +AK+EM++ANLRLV+SIAKKY+ Sbjct: 382 KV-----RLLSGEDSPGSFKALVAKIQKH----ERTANKAKQEMIKANLRLVVSIAKKYS 432 Query: 396 NRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVH 455 NRGLQFLDL+QEGNIGLMKAVDKF+Y+RGYKFSTYATWW+RQAITR+IADQARTIRIPVH Sbjct: 433 NRGLQFLDLVQEGNIGLMKAVDKFDYKRGYKFSTYATWWVRQAITRAIADQARTIRIPVH 492 Query: 456 MIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDE 515 MIET+NK+NR RQML E+GREPT EEL+ R+ M +KIRKV+KI K+P+S+E+PIGDD+ Sbjct: 493 MIETVNKINRTLRQMLHEIGREPTLEELSARLGMNVEKIRKVMKIVKDPVSLESPIGDDD 552 Query: 516 DSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDM-NTDYTLE 574 S GD IED P ++A LR T VL+ LT +E ++LRMRFGI D+TLE Sbjct: 553 SSTFGDCIEDKRAVKPENAAVLADLREITTKVLSTLTPKEERILRMRFGIGKGGKDHTLE 612 Query: 575 EVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 EVGK F+VTRERIRQIEAKALRKLRHPSR+ LR F Sbjct: 613 EVGKLFNVTRERIRQIEAKALRKLRHPSRARKLRGFF 649 >UniRef50_P61540 RNA polymerase sigma factor rpoD n=20 Tax=Bacteria RepID=RPOD_LEPIC Length = 585 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 242/618 (39%), Positives = 382/618 (61%), Gaps = 43/618 (6%) Query: 3 QNPQS--QLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP 60 +N QS +++ +++ GK G ++Y ++N+ LP+ I++S++I+D ++++MGI+++EE Sbjct: 2 ENLQSMPEVQKIISLGKANGEVSYDDINEILPDKILNSEKIDDFFTLLHEMGIEIVEEYT 61 Query: 61 DADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA 120 + L A +D ++ A + S S G + DP+++Y+RE+G V L++ E E+ +A Sbjct: 62 -RNTLEPASTLVPKDDSKPARKKKESSASTSG-SEDPIKLYLREIGKVSLISGETEVFLA 119 Query: 121 KRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDP----NAEEDLAP 176 KRIE G ++ ++ ++ ++ +++ ++ DLI VD NAEE Sbjct: 120 KRIEKGEKIIEETILSSSILRANYIKLLPKIRSKKIKVYDLIR--VDKMYALNAEE---- 173 Query: 177 TATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIK 236 H EL +++ +++++ + S S +K+ E + + + + I Sbjct: 174 --AHKLEELFFKNILVIQEQEKVLQEAVSKIRKYS----ETSKKYKEFKEKIDASTEIIH 227 Query: 237 AKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCK 296 R +Q+EI K+S+ K M+ R++ +R +K+ + + Sbjct: 228 NAIRELGVSQKEIQKISQKIKS-----------------MVFRIKEIDRHFLKIKAQYGQ 270 Query: 297 MPK--KNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLT 354 + K F NE D + +N +++ +V +++ +KL+++E+E G T Sbjct: 271 DVRDIKAFNRFIEKNEKLDD-IEVKMGVN---IDEVREVIKDIRNNERKLRRMEQEAGST 326 Query: 355 IEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK 414 ++++KD ++ GE + +AKKE+V+ANLRLV+SIAK+Y NRG+ F DLIQEGNIGL+K Sbjct: 327 VQEIKDWGEKIIKGEREISQAKKELVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIK 386 Query: 415 AVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEM 474 AVDKFEY++GYKFSTYATWWIRQAITR+I+DQARTIR+PVHMIE +NK+ R +R +QE Sbjct: 387 AVDKFEYKKGYKFSTYATWWIRQAITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEF 446 Query: 475 GREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDS 534 GR+P EE+AER+ P K++ V +A+EPIS+E P+G +EDS LGDFI DT +E P+++ Sbjct: 447 GRDPNNEEIAERLGWPVQKVKMVKNVAREPISLEIPVGSEEDSELGDFIPDTEVETPVNA 506 Query: 535 ATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKA 594 A + L VL L ARE KV+RMRFG+D TLEEVG QF VTRERIRQIEAKA Sbjct: 507 AASSILAEQIRQVLHTLPAREQKVIRMRFGLDDGYPQTLEEVGYQFKVTRERIRQIEAKA 566 Query: 595 LRKLRHPSRSEVLRSFLD 612 LR+LRHPSRS+ L+ ++D Sbjct: 567 LRRLRHPSRSKKLKDYID 584 >UniRef50_C1F1D9 RNA polymerase sigma factor n=3 Tax=Acidobacteria RepID=C1F1D9_ACIC5 Length = 597 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 188/270 (69%), Positives = 229/270 (84%) Query: 344 LQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLD 403 L+++EEE GL+I +K R + G+ A +AK+E++EANLRLV+SIAKKYTNRGLQFLD Sbjct: 324 LEKLEEEAGLSIADLKRTQREIIQGDMDAEQAKRELIEANLRLVVSIAKKYTNRGLQFLD 383 Query: 404 LIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKL 463 LIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITR+IADQARTIRIPVHMIETINKL Sbjct: 384 LIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKL 443 Query: 464 NRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFI 523 R SRQ++QE+GREPT EE+A RM +P K+RKVLKIA+EPIS+ETPIG++EDSHLGDFI Sbjct: 444 IRTSRQLVQELGREPTSEEIARRMDIPVAKVRKVLKIAQEPISLETPIGEEEDSHLGDFI 503 Query: 524 EDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVT 583 ED+ P ++ + +L+ T VL LT RE +V++MRFG++ +++TLEEVG+ F VT Sbjct: 504 EDSQAVSPSEAVISVNLKEYTSQVLRTLTPREERVIKMRFGLEDGSEHTLEEVGQSFQVT 563 Query: 584 RERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 RERIRQIEAKALRKLRHPSRS LR+F+D+ Sbjct: 564 RERIRQIEAKALRKLRHPSRSRKLRAFVDN 593 Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 55/133 (41%), Positives = 80/133 (60%), Gaps = 7/133 (5%) Query: 9 LKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLA 68 L+ L+ GKE+GYLTY EVND +P D+ + ++D++ I GI ++E +P + Sbjct: 49 LQKLIDAGKEKGYLTYNEVNDLIPGDMTSPEDLDDLMTTIGTQGIDILEGSPKLGNDGFD 108 Query: 69 ENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGIN 128 + +D+ + L +T DPVRMY+REMGTV LLTREGE++IAKRIE G Sbjct: 109 DEDSDDVELDLTPGTLE-------KTNDPVRMYLREMGTVPLLTREGEVEIAKRIERGQL 161 Query: 129 QVQCSVAEYPEAI 141 +V +V+ P I Sbjct: 162 RVMKAVSRSPIVI 174 >UniRef50_B3CQ43 RNA polymerase sigma factor n=2 Tax=Orientia tsutsugamushi RepID=B3CQ43_ORITI Length = 615 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 215/535 (40%), Positives = 318/535 (59%), Gaps = 40/535 (7%) Query: 94 TTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEA 153 +TD VR Y+++M LL+REGEI++AK++E+G V + P + L++ Y+ + Sbjct: 91 STDIVRAYLKDMSNTTLLSREGEIELAKQMEEGKKTVIHFICHLPYVMKLLIQWYEDLVH 150 Query: 154 EEARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSID 213 + +LI EL D ED+++ D D D ++ + Sbjct: 151 SRILVRNLI---------------------ELESNIYDQPEDDNQHDYDSDGDCEELQNE 189 Query: 214 P--ELAREKFAELRAQYVVTRDTIKA---------KGRSHATAQEEILKLSEVFKQFRLV 262 P ++ E ++ + V D K + +E K +E+ K+ Sbjct: 190 PLTKVESEILPKILDKMQVVSDLATQLFEVAAHDFKLHKSSCNYQESKKFTELSKELIAA 249 Query: 263 PKQFDYLVNSMRVMMDRVRTQERLIMKL------CVEQCKMPKKNFITLFTGNETSDTWF 316 + S++ +++++ + + I+ E+ K+ + +F LF N S+ Sbjct: 250 VSNIHFNKQSIKNILNKLYSVNKDIISKEINLLKAAEKYKISRHDF--LFQYNSGSNWLQ 307 Query: 317 NAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAK 376 + W++ L + + + +IE+ L +++ K+I + + GE K R AK Sbjct: 308 KVKLLHQDEWNKFLSKEKDLIKSTIDYFSEIEQAMLLPLKRFKEIIQAIQNGERKVRVAK 367 Query: 377 KEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIR 436 K+MVE+N RLV+ +AK Y NRGL FLDLIQEGNIGLMKAVDK+ Y GYKFST ATWW+R Sbjct: 368 KKMVESNTRLVVHVAKPYVNRGLPFLDLIQEGNIGLMKAVDKYNYLLGYKFSTCATWWVR 427 Query: 437 QAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRK 496 Q+I+R++ADQARTIRIPVHM +TI+K+ R+S+QM E+G EPT E+AE++ MP DK++K Sbjct: 428 QSISRAVADQARTIRIPVHMADTISKIVRVSKQMHNELGYEPTASEIAEKLSMPIDKVKK 487 Query: 497 VLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREA 556 V++IAKEP+S+E PIG+++ S L DFIED LP++ A SLR T L+ LTARE Sbjct: 488 VMRIAKEPVSLENPIGEEDGSCLSDFIEDKNAILPIEEAIKFSLRETTTRALSTLTAREE 547 Query: 557 KVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 +VLR+RFGI + TDYTLEEVG +F VTRER+RQIEAKALRKL+HP RS+ L+SFL Sbjct: 548 RVLRLRFGIGLPTDYTLEEVGGEFKVTRERVRQIEAKALRKLKHPVRSKKLKSFL 602 >UniRef50_C1SK63 RNA polymerase sigma factor n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SK63_9BACT Length = 626 Score = 378 bits (970), Expect = e-103, Method: Compositional matrix adjust. Identities = 174/250 (69%), Positives = 218/250 (87%) Query: 361 INRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE 420 I+ + +GE + +AK +++EANLRLV+SIAKKYTNRGLQFLDLIQEGNIGLMKAV+KFE Sbjct: 375 IHDSLLMGENETEKAKSKLIEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVEKFE 434 Query: 421 YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTP 480 Y+RGYKFSTYATWWIRQAITR+IADQARTIRIPVHMIETINK+ +I+RQ+ Q+MGREPTP Sbjct: 435 YKRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKMMKITRQLQQDMGREPTP 494 Query: 481 EELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESL 540 EE++ +M +P +KI+KV+KIAKEP+S+ETPIG+DEDS LGDFIED + + P + T L Sbjct: 495 EEISSKMDIPVEKIKKVMKIAKEPVSLETPIGEDEDSSLGDFIEDKSAKNPSEEVTYLKL 554 Query: 541 RAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 600 + T +L L+ REA VL++RFGI+ ++D+TLEEVGKQF+VTRERIRQIEAKALRKLRH Sbjct: 555 KEHTKQILETLSHREASVLKLRFGIECDSDHTLEEVGKQFNVTRERIRQIEAKALRKLRH 614 Query: 601 PSRSEVLRSF 610 P+RS +L++F Sbjct: 615 PTRSRILKTF 624 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/166 (33%), Positives = 98/166 (59%), Gaps = 4/166 (2%) Query: 8 QLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLML 67 ++K ++ GKE+G+LT+ E+N++LP+DI+ ++ I++I+ ++ + I V++ D L Sbjct: 11 EVKSIIALGKEKGFLTFDEINENLPDDILSTELIDEIMMLLAQLKIDVIDSKVDKPGLYS 70 Query: 68 AENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGI 127 A++ E + +L VE I T DPVR+Y++EMG + LL RE EI++AK IE+G Sbjct: 71 ADDDD---DDEDSISLLKEVEESIS-TDDPVRLYLKEMGNIALLNREEEIEVAKEIEEGQ 126 Query: 128 NQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEED 173 +V +V YP +++ + + RL D+I +AE D Sbjct: 127 RKVVRAVLLYPNTAMKIMDIARNIRNDSMRLKDIIDIDDGSDAEND 172 >UniRef50_A8ZUC3 RNA polymerase sigma factor n=10 Tax=Deltaproteobacteria RepID=A8ZUC3_DESOH Length = 738 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 177/245 (72%), Positives = 211/245 (86%) Query: 368 GEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKF 427 G +A+ +K E++ ANLRLV+SIAKKYTNRGLQFLDLIQEGN+GLMKAVDKFEYRRGYKF Sbjct: 493 GYLRAKASKSELIRANLRLVVSIAKKYTNRGLQFLDLIQEGNVGLMKAVDKFEYRRGYKF 552 Query: 428 STYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERM 487 STYATWWIRQAITR+IADQARTIRIPVHMIETINKL R SR ++QE G EP+PEE+AE+M Sbjct: 553 STYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQERGYEPSPEEIAEKM 612 Query: 488 LMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDV 547 +P +K+R+VLKIA+EPIS+ETPIG++EDSHLGDFIED +P ++A + +L T V Sbjct: 613 EIPLEKVRRVLKIAREPISLETPIGEEEDSHLGDFIEDKKFMIPSEAAVSMNLSEQTRKV 672 Query: 548 LAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVL 607 LA LT RE KVLRMRFGI D+TLEEVG+ F VTRERIRQIEAKALRKLRHP+RS++L Sbjct: 673 LATLTPREEKVLRMRFGIGEKADHTLEEVGRDFAVTRERIRQIEAKALRKLRHPTRSKML 732 Query: 608 RSFLD 612 + F++ Sbjct: 733 KHFIE 737 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 51/126 (40%), Positives = 83/126 (65%), Gaps = 9/126 (7%) Query: 3 QNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDA 62 QN + +L L+ +GK+QG LTY E+ + + + +DQ++D++ ++D+ I V+++A A Sbjct: 161 QNFKQKLSGLIAKGKKQGELTYEEIAKAIEANDIPTDQMDDLLVHLDDLDISVVKKADQA 220 Query: 63 DDLMLAENTADEDAAEAAAQVLSSV--ESEIGRTTDPVRMYMREMGTVELLTREGEIDIA 120 DD + ED A++ + S V +S+ G TD V+MY+REMG V LL+REGE++IA Sbjct: 221 DD-------SGEDGAKSTTRGDSPVTYDSDPGSVTDTVKMYLREMGLVTLLSREGEVEIA 273 Query: 121 KRIEDG 126 K+IE G Sbjct: 274 KKIEAG 279 >UniRef50_C0R506 RNA polymerase sigma factor n=4 Tax=Wolbachia RepID=C0R506_WOLWR Length = 650 Score = 374 bits (961), Expect = e-102, Method: Compositional matrix adjust. Identities = 243/657 (36%), Positives = 379/657 (57%), Gaps = 74/657 (11%) Query: 9 LKLLVTRG-KEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLML 67 +K LVT+ K+ G++T+ ++ND L ++ SD I+D I ++ D GI V+E + D +D+ Sbjct: 14 IKDLVTKSIKKGGFITFDDINDKLSDENFSSDFIDDAISLLQDSGINVLESSEDEEDIPS 73 Query: 68 AENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGI 127 + + D + + V ++ + + DPVR+Y+++M +V+LL+R EI+IAK+IE Sbjct: 74 NSDDSKLDDDDTSPNVTAT----LVQNDDPVRIYLQDMSSVKLLSRADEIEIAKKIESEK 129 Query: 128 NQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQ 187 + + ++ E + + D + L ++I N++ ++ P SE S Sbjct: 130 HNMLRAIIETSVTLKVIKVWRDDLSNGALLLREIIDLDAIYNSDFNVVPKEESEESEESA 189 Query: 188 EDLDDDED---------EDEEDG--DDDSADDDN----SIDPELA-REKFAELRAQYVVT 231 ED++D ED +DE+D DD D +N S++ ++ E ++L + +V Sbjct: 190 EDVEDSEDVSEDAEYCSDDEKDSKKSDDEKDGNNEDISSVNLNVSILEMESDLLPKVIVA 249 Query: 232 RDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLC 291 D I T E L L + K F + + L N + + +++ + + ++ Sbjct: 250 LDEI-------ITLTNEALILRKNSKNF---SNELENLYNQIWSIALQIKLSDAAVARIT 299 Query: 292 VEQCKMPK--------------------KNF---------------ITLFTGNETSDTWF 316 E K+ + ++F I+L NE ++ Sbjct: 300 QELYKINRSITLEEANLIAEARKYDIDRESFYKVYDDVLLKHELKKISLLKINENQSSFT 359 Query: 317 NAAIAMNKPWSEKLHDVSEEVHRALQKLQQ-IEEETGLTIEQVKDINRRMSIGEAKARRA 375 + + + D SE + L ++Q I+E+ +++ K++ +R+ E + A Sbjct: 360 GE---LKNKFLRFIDDNSEHIASTLNGIKQHIQEDN---VQEFKELIKRIQKHEREVSEA 413 Query: 376 KKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 435 K+EM++ANLRLV+SIAKKY+ RGL LDLIQEGNIGLMKAVDKF+Y+RGYKFSTY TWW+ Sbjct: 414 KQEMIKANLRLVVSIAKKYSKRGLDLLDLIQEGNIGLMKAVDKFDYKRGYKFSTYGTWWV 473 Query: 436 RQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIR 495 RQ+ITR+I +Q++ +RIPVHM+E I+K+NR R+M EMGREPT EEL+ + MP ++IR Sbjct: 474 RQSITRAIPEQSKVVRIPVHMVEIISKINRALRKMTHEMGREPTLEELSVELTMPLERIR 533 Query: 496 KVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTARE 555 KV+KIA++P+S+E P G D+ S GD IED + P D+A LR T +VLA LT +E Sbjct: 534 KVMKIARDPVSLEAPTGKDDSSTFGDCIEDKRVSRPEDAAILADLRGITTNVLATLTPKE 593 Query: 556 AKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 ++LRMRFG+ + ++TLEEVGK F+VTRERIRQIEAKALRKL+HPSR+ LR F Sbjct: 594 ERILRMRFGLGKDGKEHTLEEVGKIFNVTRERIRQIEAKALRKLKHPSRARKLRGFF 650 >UniRef50_C0R030 RNA polymerase sigma factor n=2 Tax=Brachyspira RepID=C0R030_BRAHW Length = 587 Score = 362 bits (930), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 224/610 (36%), Positives = 347/610 (56%), Gaps = 44/610 (7%) Query: 8 QLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLML 67 +++ L+ +G YLT+ E+N + D +D+D ++ + Q++ I ++E+ + + L Sbjct: 16 KIRKLLEKGNTNKYLTFKEINGAI--DNMDTDVMDILFQLLAARKIVIVEDKREFESLSK 73 Query: 68 AENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGI 127 +N D DAA+ VE ++G DP+R+Y++E+G V LLT + E+D +K+IE G Sbjct: 74 NQNKID-DAAK-----FIHVEDKVGNNDDPIRLYLKEIGKVSLLTHDDEVDYSKKIESGE 127 Query: 128 NQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQ 187 ++++ + + +L V+ + + ++ L P + S + Sbjct: 128 SEIENIILNTHLVVGEVLNTIKNVQIGKVSIHEI------------LEPPRIYNVSTQEK 175 Query: 188 EDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAEL--RAQYVVTRDTIKAKGRSHATA 245 L+ E++ LA EK+ L R + + T+ TIKA + Sbjct: 176 RKLERKYKNFEKEY------------VALA-EKYLSLDKRIKKITTQKTIKALTKEQEEV 222 Query: 246 QEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKL---CVEQCKMPKKNF 302 ++ I+KL + RL + D + ++ + R+ E KL ++ + + Sbjct: 223 KDSIVKL---LSKVRLNRMEIDRIAEKLKFYLHRINQIEEYFEKLKKRYYKEISDFENYY 279 Query: 303 ITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDIN 362 + +GN+ D + N E + V H+A ++ I +E + E + + Sbjct: 280 KEIESGNK--DIYIRLVDEFNIT-PEAIEAVITSFHKAQVRMADIYDEVRIDKETLVEWV 336 Query: 363 RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR 422 R++ K +AK +V+ANLRLVI+IAKKY NRGL F DL+QEGNIGL+KAVDKFEY+ Sbjct: 337 RKIDSSRRKIAQAKDHIVKANLRLVIAIAKKYVNRGLHFFDLVQEGNIGLIKAVDKFEYK 396 Query: 423 RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEE 482 +GYKFSTYATWWIRQAITRSI+DQARTIR+PVHMIE INK+ R+ RQ +Q+ GREP+ +E Sbjct: 397 KGYKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINKVQRVLRQYMQQHGREPSIQE 456 Query: 483 LAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRA 542 +A+ + PE +++ V +AK+P+S+ PIGD+ED+ LG+ IED E P + T + LR Sbjct: 457 IAKALSWPESRVKSVRNVAKDPVSLNAPIGDEEDTILGELIEDKEFESPQNITTFKILRK 516 Query: 543 ATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 602 +L L RE KV+RMRFG+ +TLEEVG F VTRERIRQIEAKA+R+LR S Sbjct: 517 QIDSILDSLPDREQKVIRMRFGLVDGYSHTLEEVGYVFKVTRERIRQIEAKAIRRLRAQS 576 Query: 603 RSEVLRSFLD 612 + + L+ FLD Sbjct: 577 KKKELKDFLD 586 >UniRef50_A6G972 RNA polymerase sigma factor n=2 Tax=Bacteria RepID=A6G972_9DELT Length = 547 Score = 359 bits (921), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 180/293 (61%), Positives = 226/293 (77%), Gaps = 10/293 (3%) Query: 325 PWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARR----AKKEMV 380 PW +LH++ + A ++++Q+E+ETG++ + + + ++ KARR AK E+V Sbjct: 261 PW--ELHELITRMKVATKRIRQVEQETGVSADNLVALYDSLT----KARREREAAKAELV 314 Query: 381 EANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAIT 440 EANLRLV+SIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY+RGYKFSTYATWWIRQAIT Sbjct: 315 EANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAIT 374 Query: 441 RSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKI 500 R+I+DQARTIR+PVHMIE+INKL R +RQ++QE GREPT +E+AE+M MP +K+R +L+I Sbjct: 375 RAISDQARTIRVPVHMIESINKLIRTTRQLVQEFGREPTHQEIAEKMNMPVEKVRSILRI 434 Query: 501 AKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLR 560 AKEPIS+ETP+G+D DS LGD IED P L T LA LT RE K+LR Sbjct: 435 AKEPISLETPLGEDGDSSLGDLIEDKNALDPGSGVVERHLGDETRRALASLTPREEKILR 494 Query: 561 MRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 +RFGI +D+TLEEVG+ F VTRERIRQIEAKAL KLR R++ LR F++D Sbjct: 495 LRFGIGEASDHTLEEVGRDFSVTRERIRQIEAKALSKLRKADRAKQLREFVED 547 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 43/72 (59%), Gaps = 3/72 (4%) Query: 105 MGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITG 164 MGT+ LLTREGEI++AKRIE G N+V V P AI Y+ + DRVE R+ D Sbjct: 1 MGTISLLTREGEIEVAKRIEAGENKVIDIVLRSPIAIPYVFDLCDRVERSLVRVKD---A 57 Query: 165 FVDPNAEEDLAP 176 FV P ++ P Sbjct: 58 FVIPAKNDEKRP 69 >UniRef50_Q5GSP3 RNA polymerase sigma factor n=6 Tax=Wolbachia RepID=Q5GSP3_WOLTR Length = 649 Score = 358 bits (918), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 229/640 (35%), Positives = 372/640 (58%), Gaps = 47/640 (7%) Query: 12 LVTRG-KEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLAEN 70 LVT+ K+ G++T+ ++ND L ++ + SD I+D I ++ D GI ++E + D ++ + Sbjct: 17 LVTKSIKKGGFITFDDINDKLSDENLSSDFIDDTISLLQDSGINILESSEDEEEAPSNSD 76 Query: 71 TADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQV 130 + D +A LS+ + + + DPVR+Y+++M +V+LL+R EI+IAK+IE + + Sbjct: 77 DSKLDDDDA----LSNTTTTLVQNDDPVRVYLQDMSSVKLLSRTDEIEIAKKIESEKHNM 132 Query: 131 QCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVG-------S 183 ++ E + + D + + L ++I N++ + P S Sbjct: 133 LRAIIETSVTLKMIKAWRDDLSSGSLLLREIIDLDAIYNSDFNAIPKEESEESIEDDKDS 192 Query: 184 ELSQEDLDDDE----DE-DEEDGDD---DSADDDNSIDPELA-REKFAELRAQYVVTRDT 234 E E DDE DE D + G+D +S +D NS + ++ E +L + +V D Sbjct: 193 ENVSEGTKDDEYCEDDEIDSKKGNDEKENSNEDINSANLNVSILEMENDLLPKVIVALDE 252 Query: 235 IKAKGRSHATAQEEI---LKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIM--- 288 I T +++ L+ ++ Q + Q ++ + ++ R IM Sbjct: 253 IITLADEALTLRKDPSGGLRYQNLYDQIWSIVLQIKLSDTAVAKITQKLYNINRSIMLEE 312 Query: 289 -KLCVEQCK--MPKKNFITLF------------TGNETSDTWFNAAIAMNKPWSEKLHDV 333 L E K + +++F+ ++ + ++S+ F + + + + D Sbjct: 313 ANLISEAKKYNIDRESFLKVYADVLLRYKLEEISSLKSSENQFCFTGELKNKFVKFIDDN 372 Query: 334 SEEVHRALQKLQQ-IEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAK 392 E + L ++Q I+E+ +++ K++ +R E + AK+ M++ANLRLV+SIAK Sbjct: 373 FEHIADTLNNIKQHIQEDN---VQEFKELIKRTQKHEREVSEAKQGMIKANLRLVVSIAK 429 Query: 393 KYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRI 452 KY+NRGL LDLIQEGNIGLMKAVDKF+Y+RGYKFSTY TWW+RQ+ITR+I +Q++ +RI Sbjct: 430 KYSNRGLALLDLIQEGNIGLMKAVDKFDYKRGYKFSTYGTWWVRQSITRAIPEQSKVVRI 489 Query: 453 PVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIG 512 PVHM+E I+K+NR R++ EMGREPT EEL+ + MP ++IRKV+KIA++P+S++ P G Sbjct: 490 PVHMVEIISKINRALRKLTHEMGREPTLEELSMELGMPLERIRKVMKIARDPVSLDAPTG 549 Query: 513 DDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNT-DY 571 D+ S GD IED + P D+A LR T ++LA LT +E +++RMRFG+ + ++ Sbjct: 550 KDDSSTFGDCIEDKRVSKPEDAAILTDLRCITTNLLATLTPKEERIIRMRFGLGKDCKEH 609 Query: 572 TLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 TLEE+G F VTRERIRQ+E+KALRKL+HP R+ LR F Sbjct: 610 TLEEIGCIFKVTRERIRQVESKALRKLKHPCRARKLRGFF 649 >UniRef50_Q1LEA3 RNA polymerase sigma factor n=1 Tax=Cupriavidus metallidurans CH34 RepID=Q1LEA3_RALME Length = 617 Score = 356 bits (914), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 223/630 (35%), Positives = 361/630 (57%), Gaps = 40/630 (6%) Query: 4 NPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDAD 63 +P+S L LV G E+G+LT+ E++D LP+ D QI+ +++ ++G+Q++E + Sbjct: 5 HPES-LVALVALGSERGFLTHGEISDALPDS--DFGQIQRVLE---ELGVQIVERTLANE 58 Query: 64 DLMLAEN----TADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDI 119 + L E+ DE E AA + + RTTDPV++Y+RE+GT+ LLTRE E+ I Sbjct: 59 PIRLEEHADALVVDEAVIEEAAAAVMQADGREARTTDPVQLYLREIGTIPLLTREDEVAI 118 Query: 120 AKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTAT 179 A+R E + ++ + P + LL D +E E + DLI + +++ A Sbjct: 119 ARRHEIAVTEMVAEMVSCPLVVYELLTMADEIERGEMAVDDLIDHW------DEVPAAAV 172 Query: 180 HVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAK- 238 +V + E + DD+ G D D S AR A L ++ + ++A+ Sbjct: 173 NVPAIEMSEAVQDDDPAPGAAGVDLEETDPVSTGASTARSS-AALESEVIARLAIVRARF 231 Query: 239 ------GRSHATAQEEILKLSEV---FKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMK 289 R A + + L+ + + L + + ++ ER I Sbjct: 232 LDWSRQSRQQAATSDAFVALNAIRAELAVYHFSAAAVARLGQVLSTHIAAIQQAERRIAG 291 Query: 290 LCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEE 349 + +++C + ++ F+ F G+E W A A E++ ++ + RA+ ++Q I+ Sbjct: 292 IVIDRCGIAREQFLQTFPGHEIDLGWSEALAA------ERISGAADALVRAIPEIQAIQR 345 Query: 350 E-------TGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL 402 E +++ +K++ +R++ A+A+ A+ EM+ +NLRLV+S AKKY +RG+ L Sbjct: 346 EMRVLENRAAMSLGDLKNLGQRVAKARARAQAARDEMIRSNLRLVVSNAKKYLHRGMPLL 405 Query: 403 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 462 DLIQEGN+GLM+AVD+F+YRRGYKFSTYATWWIRQ ITR+IAD+ TIRIP+H++E + K Sbjct: 406 DLIQEGNLGLMRAVDRFDYRRGYKFSTYATWWIRQGITRAIADKGPTIRIPIHLVEVVGK 465 Query: 463 LNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDF 522 +NR SR++ E G P PE LA R+ + K++ +L + KEP+S+E +G+ D+ L D Sbjct: 466 VNRASRELFHETGEAPAPEALAARLSLSVKKVKAILDLVKEPLSLEMSVGESGDALLWDT 525 Query: 523 IEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDV 582 + D P +SA SLR + LA L REAK+++MR+G+D TDYTLEE+G+Q+ + Sbjct: 526 LTDECSASPDESAMRVSLRKDLDEALATLKPREAKIVKMRYGVDAGTDYTLEEIGQQYGL 585 Query: 583 TRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 +RER+RQ+E +ALRKLR+P R+ L++ D Sbjct: 586 SRERVRQLERQALRKLRNPDRAPRLQAHRD 615 >UniRef50_B2V7P9 RNA polymerase sigma factor n=20 Tax=Bacteria RepID=B2V7P9_SULSY Length = 590 Score = 355 bits (911), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 166/269 (61%), Positives = 221/269 (82%) Query: 344 LQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLD 403 +++I+++ G + + + +G + K+ +V+ANLRLV+SIAKKYTNRGLQFLD Sbjct: 320 IEEIKQKIGTIPSEFDHVLDLIQLGRNEINNVKQVLVKANLRLVVSIAKKYTNRGLQFLD 379 Query: 404 LIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKL 463 LIQEGNIGLMKAVDK++Y++G+KFSTYATWWIRQAITR+IADQARTIRIPVHMIETINKL Sbjct: 380 LIQEGNIGLMKAVDKYDYKKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKL 439 Query: 464 NRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFI 523 RISR ++QE+GREPTPEE+A++ MP DK+RK+L+ +++P+S+ETPIG DE+SHLGDFI Sbjct: 440 LRISRTLVQELGREPTPEEIAKKAGMPADKVRKILRTSQDPVSLETPIGSDEESHLGDFI 499 Query: 524 EDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVT 583 ED T+ P ++LR +VL+ L+ RE +VLR RFG++ +T++TLE+VGK+F VT Sbjct: 500 EDKTVLSPEQHMLKQALRLQLDEVLSTLSEREEQVLRYRFGLEDDTEHTLEQVGKRFGVT 559 Query: 584 RERIRQIEAKALRKLRHPSRSEVLRSFLD 612 RERIRQIEAKALRKLRHP R++ L+ F++ Sbjct: 560 RERIRQIEAKALRKLRHPHRAKYLKPFIE 588 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 88/156 (56%), Gaps = 10/156 (6%) Query: 9 LKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQ-IEDIIQMINDMGIQVMEEAPDADDLML 67 ++ L+ +E+GY+TYAE++ ++ E+ SD+ IE +I+ +N++ I V + D+ + Sbjct: 10 VRTLINLAREKGYVTYAEISTYVEEEFFSSDENIESLIEYLNELNIDVRD-----DEKIK 64 Query: 68 AENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGI 127 +E DED +E LS + + DPV++Y+REMG + LL R+ EI + IE G Sbjct: 65 SE---DEDISEHLGIDLSD-DDVWNKADDPVKLYLREMGKIPLLKRDEEIKYSMEIERGR 120 Query: 128 NQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLIT 163 +V + LL+++ +V +AR+ D++ Sbjct: 121 KKVFRGLLRTSFLTERLLDEWAKVIDGKARVHDILN 156 >UniRef50_B2UM02 RNA polymerase sigma factor n=7 Tax=Verrucomicrobia RepID=B2UM02_AKKM8 Length = 688 Score = 353 bits (907), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 171/269 (63%), Positives = 213/269 (79%) Query: 344 LQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLD 403 L ++E +T +++ D + + +ARRAK EMVEANLRLVISIAKKYTNRGL FLD Sbjct: 416 LAELELRMWMTADEMGDAYQELRKWLREARRAKDEMVEANLRLVISIAKKYTNRGLSFLD 475 Query: 404 LIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKL 463 LIQEGN+GLMKAV+KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKL Sbjct: 476 LIQEGNMGLMKAVEKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKL 535 Query: 464 NRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFI 523 R+ +Q++QE GREPTPEE+AE + +P +++R VLK+A++PIS++ P+GD +D+ GDFI Sbjct: 536 MRVQKQLVQEYGREPTPEEIAEEIHLPVERVRSVLKMAQQPISLQAPVGDSDDTSFGDFI 595 Query: 524 EDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVT 583 ED E P++ A+ L+ DVL LT RE +V+ RFG+ + TLEEVG+QF VT Sbjct: 596 EDKAAENPMEEASFSFLKEKIKDVLDTLTDREREVIEQRFGLRDGSPRTLEEVGRQFSVT 655 Query: 584 RERIRQIEAKALRKLRHPSRSEVLRSFLD 612 RERIRQIEAKALRKLRHP+R ++ FL+ Sbjct: 656 RERIRQIEAKALRKLRHPTRISKIKGFLE 684 Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 49/132 (37%), Positives = 72/132 (54%), Gaps = 6/132 (4%) Query: 6 QSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDL 65 Q +++ L+ KEQGYLT+ ++ND LP DIVD E I+ + M +++ A D D Sbjct: 158 QEKIRELIKLAKEQGYLTFDDINDSLPNDIVDQQDYEAIMDRLRSMAFDIID-ASDVDSY 216 Query: 66 MLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIED 125 T + +E+++ DPVRMY+++MG V LLTRE E+ I+KRIED Sbjct: 217 -----TDRTRISTEEEDEEEKLEAKMDILDDPVRMYLKQMGQVSLLTREEEVAISKRIED 271 Query: 126 GINQVQCSVAEY 137 VQ V + Sbjct: 272 AEQNVQRCVHRF 283 >UniRef50_C0A975 RNA polymerase sigma factor n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A975_9BACT Length = 631 Score = 352 bits (903), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 169/270 (62%), Positives = 213/270 (78%) Query: 343 KLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL 402 +L++IE E + Q+ ++ R+ ++ +A +AK EMVEANLRLVISIAKKYTNRGL FL Sbjct: 300 RLREIEVEQRIEPAQLIEVVRKTNVHIREAHQAKTEMVEANLRLVISIAKKYTNRGLSFL 359 Query: 403 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 462 DLIQEGN+GLMKAV+KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIET+NK Sbjct: 360 DLIQEGNMGLMKAVEKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETLNK 419 Query: 463 LNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDF 522 + ++ +Q+LQE G EPTPEE+A+ M +P +++++++K+A++PIS+++P+GD +D+ GDF Sbjct: 420 VMQVQKQLLQEFGHEPTPEEVADEMNLPVERVQQIMKMAQQPISLQSPVGDGDDTSFGDF 479 Query: 523 IEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDV 582 IED + E P D LR DVL LT RE KVL +RFG+ TLEEVGKQF V Sbjct: 480 IEDKSAENPYDMTAYSLLREKIIDVLDSLTERERKVLSLRFGLVDGYSRTLEEVGKQFKV 539 Query: 583 TRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 TRERIRQIEAKALRK+RHP+R L F D Sbjct: 540 TRERIRQIEAKALRKMRHPTRIRQLHGFFD 569 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 78/135 (57%), Gaps = 22/135 (16%) Query: 8 QLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLML 67 +++ L+ KEQGYLT+ ++N+ LPE + + ++I++++ ++ ++ I+++E Sbjct: 40 KIRNLIRLSKEQGYLTFDDINEALPESVENQEEIDNVLSILQNLEIEILE---------- 89 Query: 68 AENTADEDAAEAAAQVLSSVESEIGRTT------DPVRMYMREMGTVELLTREGEIDIAK 121 D E Q E E RT+ DPVRMY+++MG V LLTRE E++I+K Sbjct: 90 ------PDQVEDYKQRQEEQEEEESRTSNNDILDDPVRMYLKQMGQVPLLTREQEVEISK 143 Query: 122 RIEDGINQVQCSVAE 136 RIE ++ Q ++ E Sbjct: 144 RIETAESKAQEALFE 158 >UniRef50_Q3AEW8 RNA polymerase sigma factor n=9 Tax=Clostridia RepID=Q3AEW8_CARHZ Length = 370 Score = 350 bits (898), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 164/238 (68%), Positives = 204/238 (85%) Query: 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 434 AK+++ EANLRLV+SIAK+Y RG+ FLDLIQEGN+GL+KAV+KF+YR+GYKFSTYATWW Sbjct: 133 AKRKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYRKGYKFSTYATWW 192 Query: 435 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKI 494 IRQAITR+IADQARTIRIPVHM+ETINKL R+SR +LQE+GREPTPEE+A+ M + EDK+ Sbjct: 193 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRNLLQELGREPTPEEIAKEMGISEDKV 252 Query: 495 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAR 554 R+++KIA+EP+S+ETPIG++EDSHLGDF+ED + P++ A+ LR +VL LT R Sbjct: 253 REIMKIAQEPVSLETPIGEEEDSHLGDFVEDPDAKAPVEEASYTLLREQLDEVLKTLTER 312 Query: 555 EAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 E KVLR+RFG+D TLEEVG+ F VTRERIRQIEAKALRKLRHPSRS+ L+ FL+ Sbjct: 313 EQKVLRLRFGLDDGRARTLEEVGQIFGVTRERIRQIEAKALRKLRHPSRSKKLKDFLE 370 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 78/129 (60%), Gaps = 6/129 (4%) Query: 12 LVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLAENT 71 +V +GK++G LTY ++ D L ++S+QI+++ + + + GI+V+ E P+ + + + N+ Sbjct: 13 IVEKGKKRGVLTYNDLLDSLQNVDINSEQIDELYEYLANQGIEVVPEIPELE--LDSINS 70 Query: 72 ADEDAAEAAAQV----LSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGI 127 D+D + + L E DPVRMY++E+G V LLT E EI++AKR E+G Sbjct: 71 LDDDVDFKPSDIDEVDLDLTIPEGIAIDDPVRMYLKEIGRVPLLTPEEEIELAKRKEEGD 130 Query: 128 NQVQCSVAE 136 + + +AE Sbjct: 131 EEAKRKLAE 139 >UniRef50_B0TG57 RNA polymerase sigma factor n=11 Tax=Bacteria RepID=B0TG57_HELMI Length = 371 Score = 349 bits (896), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 170/269 (63%), Positives = 218/269 (81%), Gaps = 3/269 (1%) Query: 344 LQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLD 403 L++I L+ E+ ++ +RM G+ A+R + EANLRLV+SIAK+Y RG+ FLD Sbjct: 106 LKEIGRVPLLSAEEEIELAKRMEEGDEAAKR---RLAEANLRLVVSIAKRYVGRGMLFLD 162 Query: 404 LIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKL 463 LIQEGN+GL+KAV+KF+YR+GYKFSTYATWWIRQAITR+IADQARTIRIPVHM+ETINKL Sbjct: 163 LIQEGNLGLIKAVEKFDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKL 222 Query: 464 NRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFI 523 R+SRQ+LQE GREP PEE+A+ M +P +++R+++KIA+EP+S+ETPIG++EDSHLGDFI Sbjct: 223 IRVSRQLLQEYGREPMPEEIAKEMDIPVERVREIMKIAQEPVSLETPIGEEEDSHLGDFI 282 Query: 524 EDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVT 583 ED P ++A+ L+ +VL LTARE KVLR+RFG+D TLEEVG++F VT Sbjct: 283 EDQDAPAPAEAASFILLKEQLEEVLETLTAREMKVLRLRFGLDDGRSRTLEEVGQEFGVT 342 Query: 584 RERIRQIEAKALRKLRHPSRSEVLRSFLD 612 RERIRQIEAKALRKLRHPSRS+ L+ +LD Sbjct: 343 RERIRQIEAKALRKLRHPSRSKKLKDYLD 371 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 47/125 (37%), Positives = 76/125 (60%), Gaps = 3/125 (2%) Query: 12 LVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLAENT 71 L+ +GK++G LTY E+ D L + +DQ++DI + + +MGI V+ E +++ L AE Sbjct: 19 LIAKGKKKGVLTYQEIMDALQGVEMTADQVDDIYEQLGNMGIDVVPENTESESLDKAEEP 78 Query: 72 ADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQ 131 + E + SV +G DPVRMY++E+G V LL+ E EI++AKR+E+G + Sbjct: 79 IIREEEEIEVDL--SVPEGVG-IDDPVRMYLKEIGRVPLLSAEEEIELAKRMEEGDEAAK 135 Query: 132 CSVAE 136 +AE Sbjct: 136 RRLAE 140 >UniRef50_O83506 RNA polymerase sigma factor rpoD n=11 Tax=Bacteria RepID=RPOD_TREPA Length = 611 Score = 348 bits (894), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 237/644 (36%), Positives = 358/644 (55%), Gaps = 89/644 (13%) Query: 12 LVTRGKEQGYLTYAEVNDHLPEDIVDSDQI-EDIIQMINDMGIQVME------------- 57 L+ +E+ +T+ EV + L V+++++ D++ M+ I+V Sbjct: 13 LLEYAREKKAITHDEVENILAHYGVETEELLHDVLDMLEQENIKVFSSEEEELEDEVFAG 72 Query: 58 -EAPDADD-----LMLAENTADE--DAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVE 109 + P ADD + E D+ D++ A Q L S I DPV++Y+R++G + Sbjct: 73 LKGPAADDGDGSFPLSTERVRDKLCDSSRGARQNLLSNARNIA-LDDPVKLYLRDIGQEK 131 Query: 110 LLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLIT--GFVD 167 LLT E E+ ++KR+E+G E + D+IT G Sbjct: 132 LLTAEQEVMLSKRMEEG----------------------------EGIIKDIITQSGL-- 161 Query: 168 PNAEEDLAPTATHVGSELSQEDL---DDDEDEDEEDGDDDSADDDNSID---PELAREKF 221 L P H+G LS++ L D E + D + E+ R + Sbjct: 162 ------LLPEFYHIGRSLSKKALAVLDPAESGRTRKEISEEMADRRRLKQAYGEVLRSLY 215 Query: 222 AELRAQYVVTRDTIKAKGR--SHATAQEEILK--------LSEVFKQFRLVPKQFDYLVN 271 E+R Y+ + + +G + ++ EE+ K L +V Q + + ++ Sbjct: 216 PEMR-HYMAMKKRLDERGEPVTVLSSDEEVCKQRDKLLSCLQKVDLQLEEIDRFSRKFLD 274 Query: 272 SMRVMMDRVRTQERLIMKLCV-EQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKL 330 + R + + R ++R +L + + C M K I + M+ ++ + Sbjct: 275 TARKIREYKRRKDRHEKQLMIADLCDMRK---IGRGLAVPRQRAKLEETLGMS---ADCI 328 Query: 331 HDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISI 390 ++ ++ + ++L++IE + TI+ + + R + G ++AK +++ ANLRLV+SI Sbjct: 329 QEIYTQIQKVTRRLRRIEYDFENTIDGILSMARAIHRGHVMLKKAKDKLINANLRLVVSI 388 Query: 391 AKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTI 450 AKKYTNRGL F DL+QEGNIGL+KAV+KFEYR+GYKFSTYATWWIRQAITRSI+DQARTI Sbjct: 389 AKKYTNRGLLFFDLVQEGNIGLIKAVEKFEYRKGYKFSTYATWWIRQAITRSISDQARTI 448 Query: 451 RIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETP 510 R+PVHMIE INK+ R SRQ+LQ+ GREP+ EE+A+++ +K+++V +A+EPIS+ETP Sbjct: 449 RVPVHMIEQINKVTRESRQLLQKFGREPSDEEIAQQLCWTVEKVKQVKSVAREPISLETP 508 Query: 511 IGDDEDSHLGDFIEDTTLELPLDSATTES--LRAATHDVLAGLTAREAKVLRMRFGIDMN 568 IG++EDS LGDF+ D +E P S TE L+ +L+ L ARE +VLRMRFG+D + Sbjct: 509 IGEEEDSSLGDFVPDADVENP--SRVTERVLLKEEVRSILSALPAREHEVLRMRFGLDGD 566 Query: 569 TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 TLEEVG FDVTRERIRQIEAKAL++LRHP S L+ FLD Sbjct: 567 YSQTLEEVGLYFDVTRERIRQIEAKALKRLRHPRHSRRLKDFLD 610 >UniRef50_P0A4J0 RNA polymerase sigma factor rpoD n=39 Tax=Bacteria RepID=RPOD_STRR6 Length = 369 Score = 346 bits (887), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 166/245 (67%), Positives = 203/245 (82%) Query: 369 EAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS 428 EA AK+ + EANLRLV+SIAK+Y RG+QFLDLIQEGN+GLMKAVDKF+Y +G+KFS Sbjct: 125 EAGDIEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFS 184 Query: 429 TYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERML 488 TYATWWIRQAITR+IADQARTIRIPVHM+ETINKL R R +LQE+G++PTPE++AERM Sbjct: 185 TYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMD 244 Query: 489 MPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVL 548 M DK+R++LKIA+EP+S+ETPIG+++DSHLGDFIED +E P+D T LR ++L Sbjct: 245 MTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRIVLREQLDEIL 304 Query: 549 AGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLR 608 LT RE VLR+RFG+D TLE+VGK F+VTRERIRQIEAKALRKLR PSRS+ LR Sbjct: 305 DTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRQPSRSKPLR 364 Query: 609 SFLDD 613 F++D Sbjct: 365 DFIED 369 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/130 (31%), Positives = 70/130 (53%), Gaps = 7/130 (5%) Query: 8 QLKLLVTRGKEQGYLTYAEVNDHLPEDI-VDSDQIEDIIQMINDMGIQVMEEAPDADDLM 66 Q+ + K++G T E+N L +D+D IED++Q I D GI + + + + Sbjct: 14 QVAEFIRNHKQKGTATDDEINASLVIPFTLDADGIEDLLQRIQDAGISITDNEGNPSARV 73 Query: 67 LAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDG 126 L+ +E+ E + + L + S + DPVRMY++E+G V LLT E E ++A +E G Sbjct: 74 LS----NEEEPELSDEDL--IGSTSAKVNDPVRMYLKEIGVVPLLTNEEEKELALAVEAG 127 Query: 127 INQVQCSVAE 136 + + +AE Sbjct: 128 DIEAKQRLAE 137 >UniRef50_A6A8E7 RNA polymerase sigma factor RpoD (Fragment) n=253 Tax=Gammaproteobacteria RepID=A6A8E7_VIBCH Length = 305 Score = 342 bits (877), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 200/305 (65%), Positives = 243/305 (79%), Gaps = 12/305 (3%) Query: 1 MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP 60 M+QNPQSQLK LV RGKEQGYLTYAEVNDHLP +IVDS+Q+EDIIQMINDMGI+V+E AP Sbjct: 1 MDQNPQSQLKQLVLRGKEQGYLTYAEVNDHLPAEIVDSEQVEDIIQMINDMGIKVVETAP 60 Query: 61 DADDLMLAENTA--DEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID 118 DADDL L+++T DEDAAEAAA LSSVESEIGRTTDPVRMYMREMGTVELLTREGEID Sbjct: 61 DADDLALSDDTTITDEDAAEAAAAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEID 120 Query: 119 IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTA 178 IAKRIEDGINQVQ ++AEYP I Y+LEQ+DRV+AEE RL+DLI+GFVDPN E APTA Sbjct: 121 IAKRIEDGINQVQSAIAEYPGTIPYILEQFDRVQAEELRLTDLISGFVDPNDMETEAPTA 180 Query: 179 THVGSELSQEDL----------DDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQY 228 TH+GSELS+ DL +D++++++ DG+ ++++ IDPELAREKF ELR ++ Sbjct: 181 THIGSELSEADLADEDDAVVEDEDEDEDEDGDGESSDSEEEVGIDPELAREKFNELRGKF 240 Query: 229 VVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIM 288 + + GR A E + ++F++FRL PKQFD+LV ++R MDRVRTQERL+M Sbjct: 241 QNLQLAVNEFGRDSHQASEASDLVLDIFREFRLTPKQFDHLVETLRTSMDRVRTQERLVM 300 Query: 289 KLCVE 293 K VE Sbjct: 301 KAVVE 305 >UniRef50_Q99TT5 RNA polymerase sigma factor rpoD n=78 Tax=Firmicutes RepID=RPOD_STAAN Length = 368 Score = 342 bits (877), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 161/238 (67%), Positives = 197/238 (82%) Query: 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 434 AK + EANLRLV+SIAK+Y RG+ FLDLIQEGN+GL+KAV+KF++ +G+KFSTYATWW Sbjct: 131 AKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATWW 190 Query: 435 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKI 494 IRQAITR+IADQARTIRIPVHM+ETINKL R+ RQ+LQ++GR+P PEE+ E M +P +K+ Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPAEKV 250 Query: 495 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAR 554 R+VLKIA+EP+S+ETPIG+++DSHLGDFIED + P D A E L+ DVL LT R Sbjct: 251 REVLKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDR 310 Query: 555 EAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 E VLR+RFG+D TLEEVGK F VTRERIRQIEAKALRKLRHPSRS+ L+ F+D Sbjct: 311 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFMD 368 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 43/127 (33%), Positives = 70/127 (55%), Gaps = 13/127 (10%) Query: 10 KLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLAE 69 K L+ +GK++G+L++ E+ + L +DSDQ++D +ND I ++ E D+ D Sbjct: 24 KQLIEKGKKEGHLSHEEIAEKLQNFDIDSDQMDDFFDQLNDNDISLVNEK-DSSDTDEKL 82 Query: 70 NTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQ 129 N +D A + DPVRMY++E+G V LL+ + EI++AKRIE G Sbjct: 83 NPSDLSAPPGV------------KINDPVRMYLKEIGRVNLLSAQEEIELAKRIEQGDEV 130 Query: 130 VQCSVAE 136 + +AE Sbjct: 131 AKSRLAE 137 >UniRef50_C9KNX0 RNA polymerase sigma factor n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KNX0_9FIRM Length = 373 Score = 341 bits (875), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 170/260 (65%), Positives = 211/260 (81%), Gaps = 3/260 (1%) Query: 353 LTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL 412 LT E+ + +RM G+ +A +K + EANLRLV+SIAK+Y RG+ FLDLIQEGN+GL Sbjct: 117 LTAEEEVALAKRMEAGDEEA---QKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGL 173 Query: 413 MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQ 472 +KAV+KF+Y +GYKFSTYATWWIRQAITR+IADQARTIRIPVHM+ETINKL R+SRQ+LQ Sbjct: 174 IKAVEKFDYNKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQ 233 Query: 473 EMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPL 532 ++GREPTPEE+A+ M + D++R+++KIA+EP+S+ETPIG++EDSHLGDFIED P Sbjct: 234 QLGREPTPEEIAKEMEIGVDRVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPA 293 Query: 533 DSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEA 592 D+A+ L+ DVL LT RE KVLR+RFG+D TLEEVG+ F VTRERIRQIEA Sbjct: 294 DAASFMLLKEQLEDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGQNFGVTRERIRQIEA 353 Query: 593 KALRKLRHPSRSEVLRSFLD 612 KALRKLRHPSRS L+ FLD Sbjct: 354 KALRKLRHPSRSRKLKDFLD 373 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 68/126 (53%), Gaps = 6/126 (4%) Query: 12 LVTRGKEQG-YLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLAEN 70 L+ +GK+ G LTY E+ D L + + D+I+ + + GI++++++ D + Sbjct: 22 LLAKGKKNGGTLTYGELIDALQKQALSPDEIDTMYDTFSKRGIEIVDDSQDNSSDDDVDI 81 Query: 71 TADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQV 130 ++ E V V + DPVRMY++E+G V LLT E E+ +AKR+E G + Sbjct: 82 DKSDEDVEIDLSVPEGVSID-----DPVRMYLKEIGRVPLLTAEEEVALAKRMEAGDEEA 136 Query: 131 QCSVAE 136 Q +AE Sbjct: 137 QKRLAE 142 >UniRef50_Q04506 RNA polymerase sigma factor rpoD n=15 Tax=Bacteria RepID=RPOD_LACLA Length = 386 Score = 341 bits (875), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 161/244 (65%), Positives = 201/244 (82%) Query: 368 GEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKF 427 G A AK+ + EANLRLV+SIAK+Y+ RG+QFLDLIQEGN+GLMKAVDKF++ +G+KF Sbjct: 143 GGEGAEFAKQMLAEANLRLVVSIAKRYSGRGMQFLDLIQEGNMGLMKAVDKFDHTKGFKF 202 Query: 428 STYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERM 487 STYATWWIRQAITR+IADQARTIRIPVHM+ETINKL R+ R +LQE+GR+P+PEE+ + + Sbjct: 203 STYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRNLLQELGRDPSPEEIGKEL 262 Query: 488 LMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDV 547 M DK+R+VLKIA+EP+S+ETPIG+++DSHLGDFIED +E P+D LR +V Sbjct: 263 HMAPDKVREVLKIAQEPVSLETPIGEEDDSHLGDFIEDDVIESPVDYTNRILLREQLDEV 322 Query: 548 LAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVL 607 + LT RE VLRMRFG+D +TLE+VGKQF VTRERIRQIEAKA++KLRHP RS+ L Sbjct: 323 MDTLTDREENVLRMRFGLDDGRMHTLEDVGKQFKVTRERIRQIEAKAIKKLRHPRRSKPL 382 Query: 608 RSFL 611 R F+ Sbjct: 383 RDFM 386 Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 65/125 (52%), Gaps = 10/125 (8%) Query: 6 QSQLKLLVTRGKEQGYLTYAEVNDHLPE--DIVDSDQIEDIIQMINDMGIQVMEEAPDAD 63 + +K +T+ K G E+ D L IVD D +ED+ + I D GI ++++ + Sbjct: 25 EKAVKSYITKRKPLGEALDEEIMDELSVKFGIVD-DALEDLFKQIQDAGISIVDKDGNPS 83 Query: 64 DLMLA--ENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAK 121 L L E +E + A +++++V R DPVRMY++E+G L++ + E +A+ Sbjct: 84 PLALVTDEIEKEEVSDTAMDEIVTNV-----RIDDPVRMYLKEIGRYPLISLDEETKLAE 138 Query: 122 RIEDG 126 I G Sbjct: 139 AIIAG 143 >UniRef50_P52328 RNA polymerase sigma factor rpoD n=191 Tax=Bacteria RepID=RPSD2_BACSP Length = 377 Score = 340 bits (873), Expect = 7e-92, Method: Compositional matrix adjust. Identities = 162/238 (68%), Positives = 199/238 (83%) Query: 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 434 AK+ + EANLRLV+SIAK+Y RG+ FLDLIQEGN+GL+KAV+KF++ +G+KFSTYATWW Sbjct: 140 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDHNKGFKFSTYATWW 199 Query: 435 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKI 494 IRQAITR+IADQARTIRIPVHM+ETINKL R+SRQ+LQE+GREPTPEE+A M + +K+ Sbjct: 200 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAAEMELSVEKV 259 Query: 495 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAR 554 R+++KIA+EP+S+ETPIG+++DSHLGDFIED P D+A E L+ DVL LT R Sbjct: 260 REIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALTPADAAAYELLKEQLEDVLDTLTER 319 Query: 555 EAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 E VLR+RFG+D TLEEVGK F VTRERIRQIEAKALRKLRHPSRS+ L+ FL+ Sbjct: 320 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFLE 377 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 71/126 (56%), Gaps = 2/126 (1%) Query: 12 LVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEA-PDADDLMLAEN 70 L+ +GK++ L Y ++ + L D +Q+++ + + D+GI+V+ E + +L E+ Sbjct: 22 LIEQGKKRSSLNYKDIMEKLSPFDQDPEQMDEFYEHLGDLGIEVVNENDEEVSNLRQGED 81 Query: 71 TADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQV 130 D + S+ I + DPVRMY++E+G V LL+ + E+++AKRI +G + Sbjct: 82 HDGNDNDDFNFDDDLSLPPGI-KINDPVRMYLKEIGRVPLLSADDEVELAKRIMNGDEEA 140 Query: 131 QCSVAE 136 + +AE Sbjct: 141 KRRLAE 146 >UniRef50_B8FTY1 RNA polymerase sigma factor n=3 Tax=Bacteria RepID=B8FTY1_DESHD Length = 372 Score = 338 bits (868), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 164/260 (63%), Positives = 212/260 (81%), Gaps = 3/260 (1%) Query: 353 LTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL 412 LT E+ ++ +RM G+ A+R + EANLRLV+SIAK+Y RG+ FLDLIQEGN+GL Sbjct: 116 LTAEEEIELAKRMEQGDESAKR---RLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGL 172 Query: 413 MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQ 472 +KAV+KF+Y +G+KFSTYATWWIRQAITR+IADQARTIRIPVHM+ETINKL R+SRQ+LQ Sbjct: 173 IKAVEKFDYVKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQ 232 Query: 473 EMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPL 532 E+GREPTPEE+A +M + +++R+++KIA+EP+S+ETPIG++EDSHLGDFI D P Sbjct: 233 ELGREPTPEEIAVQMDISVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPS 292 Query: 533 DSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEA 592 ++A+ L+ +VL LT RE KVLR+RFG+D TLEEVG++F VTRERIRQIEA Sbjct: 293 EAASFILLKEQLEEVLETLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEA 352 Query: 593 KALRKLRHPSRSEVLRSFLD 612 KALRKLRHPSRS+ L+ +L+ Sbjct: 353 KALRKLRHPSRSKKLKDYLE 372 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 76/132 (57%), Gaps = 5/132 (3%) Query: 9 LKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDL--- 65 +K L+ +GK++G LTY E+ D L + ++QI+++ + I MGI ++ EA + + L Sbjct: 11 VKELIQKGKKKGSLTYREIMDTLQGIELTAEQIDEVYEQIGRMGIDIIPEAGEVEALEKV 70 Query: 66 -MLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIE 124 + D+ E V S+ +G DPVRMY++E+G V LLT E EI++AKR+E Sbjct: 71 TDEIPDDVDDPDVEEEVDVDLSIPEGVG-IDDPVRMYLKEIGRVPLLTAEEEIELAKRME 129 Query: 125 DGINQVQCSVAE 136 G + +AE Sbjct: 130 QGDESAKRRLAE 141 >UniRef50_P52331 RNA polymerase sigma factor rpoD n=60 Tax=Bacteria RepID=RPOD_LISMO Length = 374 Score = 337 bits (865), Expect = 7e-91, Method: Compositional matrix adjust. Identities = 161/244 (65%), Positives = 198/244 (81%) Query: 369 EAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS 428 EA AK + EANLRLV+SIAK+Y RG+ FLDLIQEGN+GLMKAV+KF++ +G+KFS Sbjct: 131 EAGDIEAKGRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDFNKGFKFS 190 Query: 429 TYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERML 488 TYATWWIRQAITR+IADQARTIRIPVHM+ETINKL R+ R +LQ++GR+P+PEE+ E M Sbjct: 191 TYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDLGRDPSPEEIGEEMD 250 Query: 489 MPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVL 548 +P +K+R++LKIA+EP+S+ETPIG+++DSHLGDFIED P D A E L+ DVL Sbjct: 251 LPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQLEDVL 310 Query: 549 AGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLR 608 LT RE VLR+RFG+D TLEEVG+ F VTRERIRQIEAKALRKLRHPSRS+ L+ Sbjct: 311 DTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLK 370 Query: 609 SFLD 612 FL+ Sbjct: 371 DFLE 374 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/128 (33%), Positives = 74/128 (57%), Gaps = 10/128 (7%) Query: 12 LVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQV---MEEAPDADDLMLA 68 L+ GK++G LTYA++ L +DSDQ+++ ++ + + GI+V ++ + ++ Sbjct: 23 LIEEGKKKGILTYAKIAARLAPFTLDSDQMDEYLEHVGEAGIEVSDDADDEDPDETELVK 82 Query: 69 ENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGIN 128 E T D + SV + + DPVRMY++E+G V+LLT + EI +AKRIE G Sbjct: 83 EETESFDLTDM------SVPPGV-KINDPVRMYLKEIGRVDLLTADEEIALAKRIEAGDI 135 Query: 129 QVQCSVAE 136 + + +AE Sbjct: 136 EAKGRLAE 143 >UniRef50_D2RM33 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RM33_ACIFE Length = 589 Score = 332 bits (851), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 167/270 (61%), Positives = 211/270 (78%), Gaps = 2/270 (0%) Query: 345 QQIEEETGLTIEQVKD-INRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLD 403 Q+++EET IE+ K NR + E AKK + EANLRLV+SIAK+Y RG+ FLD Sbjct: 320 QKVDEETQKQIEEGKKRFNRLLHRMEFCGDNAKKCLSEANLRLVVSIAKRYVGRGMLFLD 379 Query: 404 LIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKL 463 LIQEGN+GL+KAV+KF+Y +G+KFSTYATWWIRQAITR+IADQARTIRIPVHM+ETINKL Sbjct: 380 LIQEGNLGLIKAVEKFDYNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKL 439 Query: 464 NRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFI 523 R+SRQ+LQE+GREPTPEE+A+ M + +++R++ KIA+EP+S+ETPIG++EDSHLGDFI Sbjct: 440 VRVSRQLLQELGREPTPEEIAKEMDVSVERVREIQKIAQEPVSLETPIGEEEDSHLGDFI 499 Query: 524 EDTTLELPLDSATTESLRAATHDVLA-GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDV 582 ED P D+A+ L+ VL L+ARE +VL +RFG+ TLEEVG+ F V Sbjct: 500 EDQEAPSPADAASYTLLQEQLGKVLQEHLSARERRVLELRFGLMDGRTRTLEEVGQYFGV 559 Query: 583 TRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 TRERIRQIEAKALRKLR P RS+ L+ FL+ Sbjct: 560 TRERIRQIEAKALRKLRSPKRSKPLKEFLE 589 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/127 (33%), Positives = 68/127 (53%), Gaps = 8/127 (6%) Query: 17 KEQGYLTYAEVNDHLP-EDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLAENTADED 75 K G LTY E+ D L ED V D+++ I + + I+V+++ + ++ T DED Sbjct: 81 KNHGVLTYKEIQDRLQNEDTVSVDEMDAIYSKLAEKNIEVVDDGAEDEE----PETIDED 136 Query: 76 AAEAAAQVLSSVESEIGRTTD-PVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSV 134 + L+++ G D PVRMY++E+G V LL + EI +AKR + G NQ + + Sbjct: 137 ELKVDESELANLSVPEGVIVDDPVRMYLKEIGRVPLLAGDDEIKLAKRADKG-NQAKAIL 195 Query: 135 -AEYPEA 140 E PE Sbjct: 196 KGEKPEG 202 >UniRef50_B9CNX8 RNA polymerase sigma factor n=3 Tax=Actinobacteria (class) RepID=B9CNX8_9ACTN Length = 455 Score = 331 bits (849), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 165/293 (56%), Positives = 218/293 (74%), Gaps = 12/293 (4%) Query: 330 LHDVSEEVHRAL---------QKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMV 380 L SEEV+ A+ QKL+ E+E IE + RR+ E AK++++ Sbjct: 166 LLTASEEVNLAMKIEAGTEATQKLEDFEDEK---IELSRAEQRRLMRIEQVGLDAKQQLI 222 Query: 381 EANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAIT 440 ANLRLV+SIAK+Y RG+ FLDLIQEGN+GL++AV+KF+Y +G+KFSTYATWWIRQAIT Sbjct: 223 SANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAIT 282 Query: 441 RSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKI 500 R+IADQARTIRIPVHM+ETINKL R+ RQ+LQ++GR+PTPEE+ M M D++R++ KI Sbjct: 283 RAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPTPEEIGAEMGMSPDRVREIQKI 342 Query: 501 AKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLR 560 ++EP+S+ETPIG++EDS LGDFIED+T P D+A+ LR VL GL RE KV++ Sbjct: 343 SQEPVSLETPIGEEEDSQLGDFIEDSTAIAPPDAASDSMLREQLEQVLDGLADRERKVIK 402 Query: 561 MRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 RFG++ TLEEVG++F VTRERIRQIE+K L KLRHPSRS L+ ++++ Sbjct: 403 FRFGLEDGRPRTLEEVGREFGVTRERIRQIESKTLAKLRHPSRSSRLKDYMEE 455 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 19/38 (50%), Positives = 27/38 (71%) Query: 94 TTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQ 131 T DPVRMY++E+G V+LLT E+++A +IE G Q Sbjct: 150 TGDPVRMYLKEIGKVDLLTASEEVNLAMKIEAGTEATQ 187 >UniRef50_Q9Z7F0 RNA polymerase sigma factor rpoD n=15 Tax=Chlamydiales RepID=RPOD_CHLPN Length = 572 Score = 331 bits (848), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 163/261 (62%), Positives = 203/261 (77%) Query: 352 GLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIG 411 G T+E+ K R + K++ AKKEMVE+NLRLVISIAKKYTNRGL FLDLIQEGN+G Sbjct: 294 GRTLEEFKKDVRMLQRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMG 353 Query: 412 LMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQML 471 LMKAV+KFEYRRGYKFSTYATWWIRQA+TR+IADQARTIRIPVHMIETINK+ R +++++ Sbjct: 354 LMKAVEKFEYRRGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLM 413 Query: 472 QEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELP 531 E G+EPTPEELAE + + D++R++ KIA+ PIS++ +G+ +S GDF+EDT +E P Sbjct: 414 METGKEPTPEELAEELGLTPDRVREIYKIAQHPISLQAEVGEGSESSFGDFLEDTAVESP 473 Query: 532 LDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIE 591 ++ L+ +VL LT RE VL RFG+ TLEEVG F+VTRERIRQIE Sbjct: 474 AEATGYSMLKDKMKEVLKTLTDRERFVLIHRFGLLDGKPKTLEEVGSAFNVTRERIRQIE 533 Query: 592 AKALRKLRHPSRSEVLRSFLD 612 AKALRK+RHP RS+ LR+FLD Sbjct: 534 AKALRKMRHPIRSKQLRAFLD 554 Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 19/164 (11%) Query: 2 EQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPD 61 E+ Q +L+ LV KEQG++TY E+N+ LP +QI+ ++ + M IQV+ + Sbjct: 16 EEESQKKLEELVALAKEQGFITYEEINEILPMSFDTPEQIDQVLIFLTGMDIQVLNQI-- 73 Query: 62 ADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAK 121 D E + E A+ G DPVRMY++EMGTV LLTRE E++I+K Sbjct: 74 -DVERQKEKKKEAKELEGLARRTE------GTPDDPVRMYLKEMGTVPLLTREEEVEISK 126 Query: 122 RIEDGINQVQCSVAEY----PEAIT---YLL---EQYDRVEAEE 155 RIE Q++ + + EAI+ YL+ E++D++ +E+ Sbjct: 127 RIEKAQVQIERIILRFRYSAKEAISIAHYLISGKERFDKIISEK 170 >UniRef50_C8R064 RNA polymerase sigma factor n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R064_9DELT Length = 555 Score = 329 bits (844), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 158/265 (59%), Positives = 205/265 (77%) Query: 349 EETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEG 408 E+ GL +++ + ++S+GE +R AK +V++NLRLV+S+AKKY RGLQ LDL+QEG Sbjct: 290 EQYGLDRQELSALLAQISLGEEISREAKNRLVQSNLRLVVSVAKKYAGRGLQLLDLVQEG 349 Query: 409 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISR 468 NIGLMKAV+KFEYRRGYKFSTYATWWIRQA+TR+IADQ RTIRIPVHMI+TIN++ + ++ Sbjct: 350 NIGLMKAVEKFEYRRGYKFSTYATWWIRQAVTRAIADQGRTIRIPVHMIDTINRMLKGAK 409 Query: 469 QMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTL 528 + ++ GREPTPEE+AE + + K++ +LKIAKEP+S++TP+G EDS L DFIED Sbjct: 410 EYQRQHGREPTPEEMAEHLGVDIAKVKSILKIAKEPLSLDTPVGSGEDSFLSDFIEDADS 469 Query: 529 ELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIR 588 P ++ +SL+ VL LT RE VLR+RFGID TD TLEEVG+ F VTRERIR Sbjct: 470 TSPDEATIYDSLQDNLARVLKTLTPREEMVLRLRFGIDTATDLTLEEVGENFSVTRERIR 529 Query: 589 QIEAKALRKLRHPSRSEVLRSFLDD 613 QIEAKAL+KL+HP+R +L F DD Sbjct: 530 QIEAKALKKLKHPTRKSILSPFYDD 554 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 43/70 (61%) Query: 96 DPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEE 155 DPV++Y++EMG V LL+ E E+ +AK IE G +Q ++ P A+ YL E +++ Sbjct: 108 DPVKVYLQEMGAVALLSSEEEVAVAKEIERGERTIQDALVIAPPALAYLDEIAKKIQHGN 167 Query: 156 ARLSDLITGF 165 LSD++ G Sbjct: 168 RMLSDIVRGL 177 >UniRef50_Q2GE94 RNA polymerase sigma factor n=2 Tax=Neorickettsia RepID=Q2GE94_NEOSM Length = 620 Score = 329 bits (843), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 230/641 (35%), Positives = 354/641 (55%), Gaps = 73/641 (11%) Query: 9 LKLLVTRGKEQGYLTYAEVNDHLP-EDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLML 67 +K L+T+G ++G++TY E++D ED + + IE+ I + + GI ++E+ D +D + Sbjct: 13 VKALITKGVKRGFVTYGELSDSFSDEDFENLNCIEEAISKLEESGIGILEK--DEEDELS 70 Query: 68 AENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGI 127 E +++ + AA +L G T DPVR+Y+REM V+LL+R+ E++IAK I Sbjct: 71 EEVKEEDEEEDEAADIL-------GHTDDPVRLYLREMSYVKLLSRDDEVEIAKAIVAEK 123 Query: 128 NQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQ 187 + +V +P + ++ ++ L ++I E D + + SEL++ Sbjct: 124 FESLSAVLLFPSVLKSIVNLGTKLRECTISLREVI--------ESD-----SGLKSELTE 170 Query: 188 EDLDDDEDEDEEDGDDDSADDDNSIDPELAREK----FAELRAQYVVTRDTIKAK-GRSH 242 E D D +G D ++ N + E EK F EL + ++T KAK G+ Sbjct: 171 ETGKGD---DLFEGMDGKPEEGNQMSDEELMEKVLDIFGEL--ETIITSALDKAKEGQMV 225 Query: 243 ATAQEEILKLSEV----------FKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCV 292 E++ E Q +L PK + R + + ++++++ + Sbjct: 226 KIVDGEVILDPEYRELHTLAVNHLNQVKLNPKLLAEFFENTRKKNELILEKKKVLLTF-L 284 Query: 293 EQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSE-KLHDVSEEVHRALQKLQQIEEET 351 E+ + + I A+ +++ E + D + L ++++E+ Sbjct: 285 EEHGLDRTVLIK-------GKVHILDAVVLSELLKEHNICDTHFSLEEFLSPIRELEKNE 337 Query: 352 GLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIG 411 G+ + + R+++ A AK MVEANLRLVISIAKKYTNRG+ F DLIQEGNIG Sbjct: 338 GMDYRSISFLTRKVATHLDNANAAKHRMVEANLRLVISIAKKYTNRGMPFPDLIQEGNIG 397 Query: 412 LMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQML 471 LMKAVDKF++RRG+KFSTYATWW RQAITR+IAD +R PVH+ ET NK+ R R++ Sbjct: 398 LMKAVDKFDHRRGHKFSTYATWWCRQAITRAIADCGSIVRKPVHIHETANKVMRTRRRLY 457 Query: 472 QEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDS-HLGDFIEDTTLEL 530 GREPT EE+A + + DK++K LK+ ++PIS+E+P+GDD +S GDFIED Sbjct: 458 NLNGREPTVEEIANLLKISPDKVKKSLKVNQDPISLESPVGDDSNSGSFGDFIEDKNAVS 517 Query: 531 PLDSATTESLRAATHDVLAGLTAREAKVLRMRFG------------------IDMN--TD 570 +D +++LR + LA L+ RE K+LR RFG ID+N T+ Sbjct: 518 QVDVVLSKNLRKVLDEALAMLSPREEKILRYRFGLCNSVHSPEDEHYLKSLKIDLNRGTN 577 Query: 571 YTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 TLE+VG ++VTRERIRQIE+K+LRK+R PSRS LR+FL Sbjct: 578 LTLEQVGILYNVTRERIRQIESKSLRKMRSPSRSIKLRTFL 618 >UniRef50_B9DR67 RNA polymerase sigma factor (Fragment) n=1 Tax=Enterovibrio coralii RepID=B9DR67_9GAMM Length = 242 Score = 328 bits (840), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 162/266 (60%), Positives = 199/266 (74%), Gaps = 24/266 (9%) Query: 108 VELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD 167 VELLTREGEIDIAKRIEDGINQVQ SVAEYP +I+YLL+Q+D+VEAEE RL+D+I+GFVD Sbjct: 1 VELLTREGEIDIAKRIEDGINQVQISVAEYPGSISYLLDQFDKVEAEELRLTDIISGFVD 60 Query: 168 PNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQ 227 P ++ED+APTATH+GSE +D IDPELAREKF ELR Sbjct: 61 P-SQEDIAPTATHIGSE-----------------------EDAGIDPELAREKFTELRQS 96 Query: 228 YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI 287 Y V + I GR H I +LSEVFKQFRLVPKQFD LVN MR MDRVRTQER++ Sbjct: 97 YEVMQAAINKHGRFHDDTHTAIAELSEVFKQFRLVPKQFDRLVNEMRETMDRVRTQERIV 156 Query: 288 MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI 347 M+LCV+Q KMPKK F+ LF+GNE+SD W +AA+A KP+ ++L E++ R +QKL+ + Sbjct: 157 MRLCVDQAKMPKKTFVQLFSGNESSDNWLDAALATEKPYVDRLKQYEEDLRRCIQKLKIV 216 Query: 348 EEETGLTIEQVKDINRRMSIGEAKAR 373 E+ETGL +E++KDI+RRMSIGEAKAR Sbjct: 217 EDETGLNVERIKDISRRMSIGEAKAR 242 >UniRef50_Q1NY91 RNA polymerase sigma factor n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NY91_9DELT Length = 540 Score = 327 bits (837), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 157/269 (58%), Positives = 205/269 (76%) Query: 345 QQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDL 404 QQ + GL E + +I ++ G+ ++ AK +V+ANLRLV+S+AKKY RGLQ LDL Sbjct: 272 QQCLQNHGLDQEGLAEIQAGIARGQEVSQEAKNRLVQANLRLVVSVAKKYAGRGLQLLDL 331 Query: 405 IQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLN 464 IQEGNIGLMKAV+KFEYRRGYKFSTYATWWIRQA+TR+IADQ RTIRIPVHMI+TIN++ Sbjct: 332 IQEGNIGLMKAVEKFEYRRGYKFSTYATWWIRQAVTRAIADQGRTIRIPVHMIDTINRML 391 Query: 465 RISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIE 524 + +++ ++ GREPTP+E+A+ + + K++ VLKIAKEP+S++TP+G+ DS L DFIE Sbjct: 392 KGAKEFQRQHGREPTPDEMAQHLGVEVAKVKSVLKIAKEPLSLDTPVGNSNDSFLADFIE 451 Query: 525 DTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTR 584 DT P ++ E+L++ VL L+ RE VLR+RFG+D D TLEEVG+ F VTR Sbjct: 452 DTEAASPDEATIYENLQSNLRRVLKTLSPREEMVLRLRFGLDTAMDLTLEEVGENFAVTR 511 Query: 585 ERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 ERIRQIEAKAL+KL+HP+R L SF DD Sbjct: 512 ERIRQIEAKALKKLKHPARRNQLSSFYDD 540 >UniRef50_D1C1P9 RNA polymerase sigma factor n=6 Tax=Chloroflexi RepID=D1C1P9_SPHTD Length = 538 Score = 325 bits (833), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 151/238 (63%), Positives = 197/238 (82%) Query: 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 434 A+K++ EANLRLV+S+AKKY RG+ LDL+QEGN+GL++AV+KF++ +G+KFSTYATWW Sbjct: 301 ARKKLTEANLRLVVSVAKKYGGRGMSMLDLVQEGNLGLIRAVEKFQHHKGFKFSTYATWW 360 Query: 435 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKI 494 IRQAITR+IADQARTIRIPVHM+E IN+L R SR++ QE+GREPT EE+A M +P DK+ Sbjct: 361 IRQAITRAIADQARTIRIPVHMVEQINRLIRTSRRLQQELGREPTSEEIAAEMGLPPDKV 420 Query: 495 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAR 554 R++LKI++EP+S+E PIG++EDS+LGDFIED+ P D+A+ + L+ DVL L R Sbjct: 421 REILKISQEPVSLEMPIGEEEDSNLGDFIEDSKALAPSDAASLKLLKEQVDDVLGSLGDR 480 Query: 555 EAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 E +VL +RFG+D TLEEVG++F VTRERIRQIEAKALRKLRHPSRS+ LR +L+ Sbjct: 481 ERRVLELRFGLDDGRTRTLEEVGREFGVTRERIRQIEAKALRKLRHPSRSKKLRDYLE 538 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 68/122 (55%), Gaps = 11/122 (9%) Query: 9 LKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLA 68 ++ ++ R +EQGYL+ E+ D + + ++ I + +M + V++ A DA DL Sbjct: 42 IRRIIERAREQGYLSAEELAD-VASAPGGAAAVDAITSQLAEMNVPVLDPAEDAPDL--- 97 Query: 69 ENTADEDAAEAAAQVLSSVESEIGRTT----DPVRMYMREMGTVELLTREGEIDIAKRIE 124 D A EA + S+ S++ + DPVR+Y+RE+G V+LLT E E+ +A+ +E Sbjct: 98 ---PDVAAVEADNDLFSTELSDVDLSGVSLDDPVRIYLREIGRVQLLTGEQEVALAQAME 154 Query: 125 DG 126 G Sbjct: 155 RG 156 >UniRef50_C4G0D3 RNA polymerase sigma factor n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G0D3_ABIDE Length = 409 Score = 323 bits (828), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 153/236 (64%), Positives = 192/236 (81%) Query: 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 434 A + E+NLRLV+SIAKKY RGL FLDLIQEGN+GL+KAVDKF+Y +GYKFSTYATWW Sbjct: 171 ATDRLTESNLRLVVSIAKKYVGRGLSFLDLIQEGNLGLIKAVDKFDYSKGYKFSTYATWW 230 Query: 435 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKI 494 IRQAITRSIADQ+RTIRIPVHM E INK RISR +LQE+GREPT EE+A+ M +P +K+ Sbjct: 231 IRQAITRSIADQSRTIRIPVHMSEVINKAYRISRSLLQELGREPTEEEIAKEMNLPVEKV 290 Query: 495 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAR 554 R+++KI+ +PIS++TPIG+++DSHLGDFI+D T+ P D+A L+ +L L+ R Sbjct: 291 REIMKISADPISLDTPIGEEDDSHLGDFIKDDTIMGPEDAAAYTMLQDQIQKLLTTLSER 350 Query: 555 EAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSF 610 E +VL +RFG+ TLEEVGK+F+VTRERIRQIEAKALRKLRHP+R+ +LR F Sbjct: 351 EQRVLILRFGLLDGRTRTLEEVGKEFNVTRERIRQIEAKALRKLRHPNRARMLRGF 406 >UniRef50_C7NC70 RNA polymerase sigma factor n=6 Tax=Bacteria RepID=C7NC70_LEPBD Length = 392 Score = 323 bits (828), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 162/279 (58%), Positives = 212/279 (75%), Gaps = 6/279 (2%) Query: 332 DVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIA 391 DV E + L+++ QI L+ E+ D +R+ GE +A K++++E+NLRLV+SIA Sbjct: 118 DVDEPIKMYLREIGQI---PLLSYEEEIDYAQRVLDGEEEA---KQKLIESNLRLVVSIA 171 Query: 392 KKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIR 451 KK+TNRGL+ LDLIQEGN+GLMKAV+KFEY +G+KFSTYATWWIRQAITR+IADQ RTIR Sbjct: 172 KKHTNRGLKMLDLIQEGNMGLMKAVEKFEYEKGFKFSTYATWWIRQAITRAIADQGRTIR 231 Query: 452 IPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPI 511 IPVHMIETINK+ + SR +LQE G+EPT EELAE++ +P +K++ +L++ ++PIS+ETP+ Sbjct: 232 IPVHMIETINKIKKESRIILQETGKEPTAEELAEKLELPVEKVKSILEMNQDPISLETPV 291 Query: 512 GDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDY 571 G +EDS LGDF+ED P D+ T L+ +VL L RE VLR R+G+D + Sbjct: 292 GSEEDSELGDFVEDDKFANPYDATTRILLKEQLDEVLKTLNEREEMVLRYRYGLDDGSQK 351 Query: 572 TLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSF 610 TLEEVGK F+VTRERIRQIE KALRKLRHPSR + L + Sbjct: 352 TLEEVGKIFNVTRERIRQIEVKALRKLRHPSRRKKLEDY 390 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 78/147 (53%), Gaps = 24/147 (16%) Query: 3 QNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDA 62 QN ++ L + + +EQ ++Y E+N L +++IE +I+ + D G+Q+++ + Sbjct: 6 QNLKNSLANFIKQAREQKVVSYEEINSVLSIGF-STEKIEQLIKKLTDDGVQIVDTKKEK 64 Query: 63 DDLM-LAENTADEDAAEAAAQVLSS---VESEIGRT-------TD------------PVR 99 +DL+ + E AD + E + + VESEI + TD P++ Sbjct: 65 EDLLKVPETLADIEKMEISDFEDTHDEFVESEIDDSEVDKLLQTDLLKMAESMDVDEPIK 124 Query: 100 MYMREMGTVELLTREGEIDIAKRIEDG 126 MY+RE+G + LL+ E EID A+R+ DG Sbjct: 125 MYLREIGQIPLLSYEEEIDYAQRVLDG 151 >UniRef50_C7GZY7 RNA polymerase sigma factor n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZY7_9FIRM Length = 447 Score = 323 bits (827), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 153/239 (64%), Positives = 194/239 (81%) Query: 374 RAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW 433 +A ++ EANLRLV+SIAK + +RG+ FLDLIQEGN+GLMKAVDKF+ R +KFSTYATW Sbjct: 209 KAMHQLCEANLRLVVSIAKNHKDRGMHFLDLIQEGNLGLMKAVDKFDVDRNFKFSTYATW 268 Query: 434 WIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDK 493 WIRQAITR+IADQARTIRIPVHM+ETI+KL RISR +LQE+GREP PEE+A+ M + +K Sbjct: 269 WIRQAITRAIADQARTIRIPVHMVETIHKLTRISRTLLQELGREPKPEEIAKEMDITTEK 328 Query: 494 IRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTA 553 +R +L+I++EP+S+E PIG++EDSHLGDFI DT + PLD A + LR +VL L Sbjct: 329 VRDILRISQEPVSLEKPIGEEEDSHLGDFIPDTEVPSPLDVAFSSMLRDELLEVLNTLGE 388 Query: 554 REAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 RE VL++RFG+ TLEEVGKQFDVTRERIRQIE+KA+RKL+HP+ S+ LR ++D Sbjct: 389 RERNVLKLRFGLVDGKQRTLEEVGKQFDVTRERIRQIESKAIRKLKHPNMSKKLRDYID 447 >UniRef50_A5UQ16 RNA polymerase sigma factor n=3 Tax=Chloroflexi (class) RepID=A5UQ16_ROSS1 Length = 541 Score = 322 bits (826), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 151/242 (62%), Positives = 196/242 (80%) Query: 371 KARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY 430 + + A++++ +ANLRLV+S+AKKY RGLQ LDLIQEGN+GL++AV+KF+YR+G+KFSTY Sbjct: 300 QGKTAREDLTQANLRLVVSVAKKYIGRGLQLLDLIQEGNVGLIRAVEKFDYRKGFKFSTY 359 Query: 431 ATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMP 490 ATWWIRQAITR+IADQARTIRIPVHM+ETIN+L R SR+MLQE+GREPT EEL+ + +P Sbjct: 360 ATWWIRQAITRAIADQARTIRIPVHMVETINRLMRESRRMLQELGREPTDEELSRALGIP 419 Query: 491 EDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAG 550 DK+R + K + EP+S+ETP+G +EDS LGDFIED+ + P D+A+ + LR VL Sbjct: 420 VDKVRSIRKTSLEPVSLETPVGQEEDSQLGDFIEDSKVLAPSDAASHQMLREQVEQVLNQ 479 Query: 551 LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSF 610 LT RE +VL++RFG++ TLEEVGK+F VTRERIRQIE KALRKLRHP + LR + Sbjct: 480 LTERERRVLQLRFGLEDGHSRTLEEVGKEFGVTRERIRQIEVKALRKLRHPRLGKKLRDY 539 Query: 611 LD 612 L+ Sbjct: 540 LE 541 Score = 48.1 bits (113), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 60/127 (47%), Gaps = 10/127 (7%) Query: 2 EQNPQSQLKL--LVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEA 59 E+ PQ+ L L+ GK++G++T E+ L DSD++ +I Q + GI +E Sbjct: 30 EEEPQTITSLSDLLAIGKQRGFVTEGEIAQLLANSDADSDRLAEIQQALQAAGIATRDE- 88 Query: 60 PDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDI 119 + A+ D + E D VRMY+RE+G V LL EI + Sbjct: 89 -------MITGGAEIDIPFEEEGDFDDLNVEGISVNDTVRMYLREIGRVPLLNARQEILL 141 Query: 120 AKRIEDG 126 A++IE G Sbjct: 142 AQKIEIG 148 >UniRef50_Q02AX1 RNA polymerase sigma factor n=2 Tax=Acidobacteria RepID=Q02AX1_SOLUE Length = 518 Score = 322 bits (825), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 154/270 (57%), Positives = 210/270 (77%) Query: 342 QKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQF 401 +++++ E G T+ ++K + GEA+A RAKK++VEANLRLV+S+AKKY NRGL Sbjct: 246 REIKKREIAAGATLPELKHSLTVIRHGEAEAERAKKDLVEANLRLVVSVAKKYVNRGLHL 305 Query: 402 LDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETIN 461 LDLIQEGNIGLM+A DKFEYRRGYKFSTYATWWIRQAITR+IADQ+RTIRIPVHM E++N Sbjct: 306 LDLIQEGNIGLMRAADKFEYRRGYKFSTYATWWIRQAITRAIADQSRTIRIPVHMNESMN 365 Query: 462 KLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGD 521 K R +R++ +E+GR PT +E+ RM +P +K++K+ I+++P+S+ETP+G D +S LGD Sbjct: 366 KFLRATRELEKELGRTPTNDEIGRRMDIPVEKVQKLKTISRDPVSLETPVGRDGESALGD 425 Query: 522 FIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFD 581 IED + P+D+ ++R T +L L+ +E KV+RMRFGI ++TLEE+G++FD Sbjct: 426 LIEDRWVGSPVDAVIESNVRDETAGILKTLSPKEEKVIRMRFGIGCEREHTLEEIGQEFD 485 Query: 582 VTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 VTRERIRQIEAKALR+LR P R+ LR+ + Sbjct: 486 VTRERIRQIEAKALRQLRAPERARRLRALM 515 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/99 (38%), Positives = 56/99 (56%), Gaps = 12/99 (12%) Query: 39 DQIEDIIQMINDMGIQVMEEAPDADDLMLAENTA--DEDAAEAAAQVLSSVESEIGRTTD 96 DQ ED Q + E P+A L ++ D +AA A + + E T D Sbjct: 11 DQFED----------QFLAENPEALGLSFEDDPKFFDPEAAHEADFLHPAPVEESIYTDD 60 Query: 97 PVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVA 135 PVR+Y+REMG V LLTREGE+D+A+R+E G ++Q +++ Sbjct: 61 PVRVYLREMGAVPLLTREGEVDLARRMERGKLRMQKAIS 99 >UniRef50_C8NZE6 RNA polymerase sigma factor n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZE6_ERYRH Length = 459 Score = 322 bits (825), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 156/240 (65%), Positives = 196/240 (81%), Gaps = 3/240 (1%) Query: 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 434 A++ ++ ANLRLV+SIAKKY RG+ FLDLIQEGN+GL+KAV+KF+Y +G+KFSTYATWW Sbjct: 219 ARRILISANLRLVVSIAKKYVGRGMLFLDLIQEGNMGLVKAVEKFDYTKGFKFSTYATWW 278 Query: 435 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERM--LMPED 492 IRQAITR+IADQARTIRIPVHM+ETINKL RI R ++Q +GREPT EE+A M + PE Sbjct: 279 IRQAITRAIADQARTIRIPVHMVETINKLTRIQRSLVQTLGREPTAEEIAAEMENITPE- 337 Query: 493 KIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLT 552 K+R++ KIA +P+S+ETPIG+++DSHLGDFIED P + A + L+ VL GLT Sbjct: 338 KVREIQKIALDPVSLETPIGEEDDSHLGDFIEDKDALSPDEYANNQLLKEEIKMVLEGLT 397 Query: 553 AREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 RE KVLR+RFG++ TLEEVGK+F+VTRERIRQIEAKALRKL+HP+RS+ LR F+D Sbjct: 398 EREEKVLRLRFGLEDGRTRTLEEVGKEFNVTRERIRQIEAKALRKLKHPTRSKRLRDFVD 457 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 70/133 (52%), Gaps = 23/133 (17%) Query: 29 DHLPEDIVDSDQIEDIIQMINDMGI-----------QVMEEA--PDADDLMLA-ENTADE 74 DHL ++ D E++ + + GI +VM EA PD DD ++ E DE Sbjct: 36 DHLN---LNDDDSEELFEWFTEKGIILSDDEDDIDEEVMLEAGEPDVDDDFISDEAEEDE 92 Query: 75 DAAEAAAQV-LSSVESEIG-----RTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGIN 128 ++ +V LSS E+E+ R DPV+MY++E+G V LL + E +IA+R+++G Sbjct: 93 IFDDSLNKVDLSSYENELTSANMVRINDPVKMYLKEIGRVNLLDAKDEPEIARRLQEGEQ 152 Query: 129 QVQCSVAEYPEAI 141 + + +Y E + Sbjct: 153 AKEFIINKYKEIV 165 >UniRef50_C4LJ07 RNA polymerase sigma factor n=115 Tax=Bacteria RepID=C4LJ07_CORK4 Length = 621 Score = 321 bits (822), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 152/266 (57%), Positives = 205/266 (77%), Gaps = 8/266 (3%) Query: 355 IEQVKDINRRMSIGEAK--------ARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQ 406 +E++K N ++S +++ R+AK ++EANLRLV+S+AK+YT RG+ FLDLIQ Sbjct: 356 LEELKASNTKLSPAQSRDLRSIAHDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 415 Query: 407 EGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRI 466 EGN+GL++AV+KF+Y +GYKFSTYATWWIRQAITRS+ADQARTIRIPVHM+E INKL RI Sbjct: 416 EGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRSMADQARTIRIPVHMVEVINKLGRI 475 Query: 467 SRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDT 526 R++LQ++ REPTPEELA M + EDK+ ++ + A+EPIS++ IGD+ DS LGDFIED+ Sbjct: 476 QRELLQDLSREPTPEELAREMDITEDKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDS 535 Query: 527 TLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRER 586 + +D+ + L+ DVL LT REA V+R+RFG+ TL+E+G+ + VTRER Sbjct: 536 EAVVAVDAVSFTLLQDQLQDVLKTLTEREAGVVRLRFGLTDGMPRTLDEIGQVYGVTRER 595 Query: 587 IRQIEAKALRKLRHPSRSEVLRSFLD 612 IRQIE+K + KLRHPSRS+VLR +LD Sbjct: 596 IRQIESKTMSKLRHPSRSQVLRDYLD 621 >UniRef50_B9L102 RNA polymerase sigma factor n=2 Tax=Bacteria RepID=B9L102_THERP Length = 509 Score = 317 bits (813), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 148/245 (60%), Positives = 195/245 (79%), Gaps = 4/245 (1%) Query: 368 GEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKF 427 GEA A++++ EANLRLV+SIAK+YT RGL LDLIQEGN+GLM+AVDKF+ +G+KF Sbjct: 269 GEA----ARRKLTEANLRLVVSIAKRYTGRGLTLLDLIQEGNLGLMRAVDKFQTHKGFKF 324 Query: 428 STYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERM 487 STYATWWIRQAITR++AD ARTIR+PVH++ET+N+++R++RQ+ QE+GREPT ELA + Sbjct: 325 STYATWWIRQAITRALADHARTIRLPVHLVETLNRVSRVARQLTQELGREPTTSELAAAV 384 Query: 488 LMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDV 547 MP D++R++L+ A++P+S+E P+G +E+S LGDF+ED PLD+A LR + Sbjct: 385 NMPLDRLRELLQAAQDPVSLEAPVGQEEESTLGDFLEDERAVAPLDAAALSLLREQVQSL 444 Query: 548 LAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVL 607 LA LT RE +VL MRFG++ YTLEEVG+ F VTRER+RQIEAKALRKLRHP R+ L Sbjct: 445 LATLTERERRVLAMRFGLEDGQTYTLEEVGRAFGVTRERVRQIEAKALRKLRHPQRARAL 504 Query: 608 RSFLD 612 R FL+ Sbjct: 505 RDFLE 509 >UniRef50_A5IMD4 RNA polymerase sigma factor n=24 Tax=Bacteria RepID=A5IMD4_THEP1 Length = 407 Score = 315 bits (808), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 161/282 (57%), Positives = 209/282 (74%), Gaps = 3/282 (1%) Query: 330 LHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVIS 389 +HD S L++I + LT Q +++ RR +G+ KA K++++ +NLRLV+S Sbjct: 121 IHDSSNVRDSIKMYLKEIGKIPLLTPAQERELARRAQMGDKKA---KEKLITSNLRLVVS 177 Query: 390 IAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQART 449 IAK+Y RGL F DLIQEGNIGL+KAV+KF++R+GYKFSTYATWWIRQAITR+IADQART Sbjct: 178 IAKRYMGRGLSFQDLIQEGNIGLLKAVEKFDWRKGYKFSTYATWWIRQAITRAIADQART 237 Query: 450 IRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMET 509 IRIPVHM+ETINKLNR+ R+ Q+ G EP+ EELA+ M P +KI+++L+ AKE IS+E+ Sbjct: 238 IRIPVHMVETINKLNRLRREYYQKHGEEPSIEELAKMMGKPPEKIKEILEAAKETISLES 297 Query: 510 PIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNT 569 PIG+DEDS + DF+ D ++ P A +R VL L+ REA VLRMR+G+ Sbjct: 298 PIGEDEDSSIEDFVADDSIASPKKEAMRMLMREELEKVLKTLSPREAMVLRMRYGLLDGK 357 Query: 570 DYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 TLEEVG+ F+VTRERIRQIE KALRKLRHPSRS+ L+S L Sbjct: 358 PKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKYLKSLL 399 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 67/123 (54%), Gaps = 5/123 (4%) Query: 6 QSQLKLLVTRGKEQGYLTYAEVNDHLPEDI--VDSDQIEDIIQMINDMGIQVMEEAPDAD 63 + ++K L++ GK++GY+TY +++ P D D++ IE I + + GI ++E + + Sbjct: 40 EKRIKKLISLGKKKGYITYEDIDKAFPPDFEDFDTNLIERIHEELEKHGINIVESESEEE 99 Query: 64 DLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRI 123 ++ + DE E + S + D ++MY++E+G + LLT E ++A+R Sbjct: 100 EMSVP---GDEQELEELLERESPEIHDSSNVRDSIKMYLKEIGKIPLLTPAQERELARRA 156 Query: 124 EDG 126 + G Sbjct: 157 QMG 159 >UniRef50_P77994 RNA polymerase sigma factor rpoD n=6 Tax=Thermotogaceae RepID=RPOD_THEMA Length = 399 Score = 315 bits (806), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 161/282 (57%), Positives = 209/282 (74%), Gaps = 3/282 (1%) Query: 330 LHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVIS 389 +HD S L++I + LT Q +++ RR +G+ KA K++++ +NLRLV+S Sbjct: 113 IHDSSNVRDSIKMYLKEIGKIPLLTPAQERELARRAQMGDKKA---KEKLITSNLRLVVS 169 Query: 390 IAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQART 449 IAK+Y RGL F DLIQEGNIGL+KAV+KF++R+GYKFSTYATWWIRQAITR+IADQART Sbjct: 170 IAKRYMGRGLSFQDLIQEGNIGLLKAVEKFDWRKGYKFSTYATWWIRQAITRAIADQART 229 Query: 450 IRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMET 509 IRIPVHM+ETINKLNR+ R+ Q+ G EP+ EELA+ M P +KI+++L+ AKE IS+E+ Sbjct: 230 IRIPVHMVETINKLNRLRREYYQKHGEEPSIEELAKMMGKPPEKIKEILEAAKETISLES 289 Query: 510 PIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNT 569 PIG+DEDS + DF+ D ++ P A +R VL L+ REA VLRMR+G+ Sbjct: 290 PIGEDEDSSIEDFVADDSIASPKKEAMRMLMREELEKVLKTLSPREAMVLRMRYGLLDGK 349 Query: 570 DYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 TLEEVG+ F+VTRERIRQIE KALRKLRHPSRS+ L+S L Sbjct: 350 PKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKYLKSLL 391 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 69/123 (56%), Gaps = 5/123 (4%) Query: 6 QSQLKLLVTRGKEQGYLTYAEVNDHLPEDI--VDSDQIEDIIQMINDMGIQVMEEAPDAD 63 + ++K L++ GK++GY+TY +++ P D D++ IE I + + GI ++E P+ + Sbjct: 32 ERRIKKLISLGKKKGYITYEDIDKAFPPDFEGFDTNLIERIHEELEKHGINIVENEPEEE 91 Query: 64 DLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRI 123 ++ ++DE E + S + D ++MY++E+G + LLT E ++A+R Sbjct: 92 EI---SASSDEQELEELLEKESPEIHDSSNVRDSIKMYLKEIGKIPLLTPAQERELARRA 148 Query: 124 EDG 126 + G Sbjct: 149 QMG 151 >UniRef50_P0A603 RNA polymerase sigma factor rpoD n=66 Tax=Actinobacteria (class) RepID=RPOD_MYCBO Length = 528 Score = 310 bits (795), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 144/239 (60%), Positives = 192/239 (80%) Query: 374 RAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW 433 RAK ++EANLRLV+S+AK+YT RG+ FLDLIQEGN+GL++AV+KF+Y +GYKFSTYATW Sbjct: 290 RAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATW 349 Query: 434 WIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDK 493 WIRQAITR++ADQARTIRIPVHM+E INKL RI R++LQ++GREPTPEELA+ M + +K Sbjct: 350 WIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEK 409 Query: 494 IRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTA 553 + ++ + A+EPIS++ IGD+ DS LGDFIED+ + +D+ + L+ VL L+ Sbjct: 410 VLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSE 469 Query: 554 REAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 REA V+R+RFG+ TL+E+G+ + VTRERIRQIE+K + KLRHPSRS+VLR +LD Sbjct: 470 REAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 73 DEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQ 131 DED +EA Q + ++E+ + D VR Y++++G V LL E E+++AKRIE G+ Q Sbjct: 205 DEDESEALRQ--ARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQ 261 >UniRef50_Q6AQ51 RNA polymerase sigma factor n=1 Tax=Desulfotalea psychrophila RepID=Q6AQ51_DESPS Length = 534 Score = 310 bits (793), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 153/287 (53%), Positives = 210/287 (73%), Gaps = 5/287 (1%) Query: 332 DVSEEVHRALQKLQ-----QIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRL 386 D+ EE R+ ++L+ Q E+G +++ + ++ + + G ++ AK+ +V ANLRL Sbjct: 248 DLPEEEMRSPEELERLVDLQFIRESGSSLQSLNELLKEVEEGRFISKEAKEALVRANLRL 307 Query: 387 VISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQ 446 VIS++K++ NRGLQF DLIQEGNIGLMKAV+KF+YRRG+KFSTYATWWIRQ+ITR IADQ Sbjct: 308 VISVSKRFVNRGLQFSDLIQEGNIGLMKAVEKFDYRRGFKFSTYATWWIRQSITRGIADQ 367 Query: 447 ARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPIS 506 RTIR+PVHMIETIN++ R+S+ E REP+ EE+A ++ DK++ LKIAK+ IS Sbjct: 368 GRTIRLPVHMIETINRMLRVSKDFYLEEHREPSVEEVAGQLGTEVDKVKSALKIAKDAIS 427 Query: 507 METPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGID 566 ++TP+GDD +++LGDFI D P A SL+ VL+ L+ RE KVL+MR+GI Sbjct: 428 LDTPVGDDGETYLGDFIVDKNCLGPDGFAMVASLKECLSQVLSSLSPREEKVLKMRYGIL 487 Query: 567 MNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 +YTLEEVG+ F+VTRERIRQIEA+A+ KL+HPSR L+ F+ D Sbjct: 488 EKREYTLEEVGRCFNVTRERIRQIEAQAISKLKHPSRCGDLKVFMTD 534 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 68/128 (53%), Gaps = 5/128 (3%) Query: 57 EEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTT---DPVRMYMREMGTVELLTR 113 + +P + ++A + ++ A + +SS + + G +T D + +YMREMG+++LL Sbjct: 36 KSSPVLGEPLVAGSDLLKEGVRAPKRRISSSQRKQGDSTAAADSMNIYMREMGSLKLLKY 95 Query: 114 EGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEED 173 + E +A+ IE G QVQ +V + A+ LL+ + + ++S + G P+A+ D Sbjct: 96 DDERKLAQTIEKGKKQVQFAVLQSTLAMPILLQMKETIVENPGKISLFVGGI--PDAQFD 153 Query: 174 LAPTATHV 181 + A V Sbjct: 154 VIAEACDV 161 >UniRef50_Q9ZMY3 RNA polymerase sigma factor rpoD n=59 Tax=Epsilonproteobacteria RepID=RPOD_HELPJ Length = 681 Score = 308 bits (790), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 145/265 (54%), Positives = 202/265 (76%), Gaps = 1/265 (0%) Query: 348 EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 407 EE L ++K+I ++ G+ + RAK +M ++NLRLV+SIAK++T+RGL FLDLIQE Sbjct: 415 EEGFDLAPNKLKEILEQIKRGKLISDRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQE 474 Query: 408 GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 467 GNIGLMKAVDKFE+ +G+KFSTYATWWI+QAI+R+IADQARTIRIP+HMI+TIN++N++ Sbjct: 475 GNIGLMKAVDKFEHEKGFKFSTYATWWIKQAISRAIADQARTIRIPIHMIDTINRINKVM 534 Query: 468 RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 527 R+ +QE G+EP E +AE + + DK++ V+K+ KEPIS+ETP+G+D+D GDF+ED Sbjct: 535 RKHIQETGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGKFGDFVEDKN 594 Query: 528 LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFG-IDMNTDYTLEEVGKQFDVTRER 586 + +D E L+A VL L RE V+RMRFG +D +D TLEE+GK+ +VTRER Sbjct: 595 IVSSIDHIMREDLKAQIESVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKELNVTRER 654 Query: 587 IRQIEAKALRKLRHPSRSEVLRSFL 611 +RQIE+ A++KLR P +LR++L Sbjct: 655 VRQIESSAIKKLRSPQYGRILRNYL 679 >UniRef50_P52323 RNA polymerase sigma factor rpoD n=32 Tax=Borrelia RepID=RPOD_BORBU Length = 631 Score = 306 bits (784), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 144/278 (51%), Positives = 210/278 (75%) Query: 336 EVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYT 395 E A ++L++IE +++ ++ ++ G+ + AK ++++ANLRLV+SIAKKY Sbjct: 352 EAQLAQKELERIEMYYEYPTDKIISMSEEIAKGKQMMQHAKDQLIKANLRLVVSIAKKYA 411 Query: 396 NRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVH 455 NRGL F DL+QEGNIGL+KAV+KFEY+RG+KFSTYATWWIRQAITRSI+DQARTIR+PVH Sbjct: 412 NRGLHFFDLVQEGNIGLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVH 471 Query: 456 MIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDE 515 MIE IN+LNR +R ++Q +G++PT EEL++R+ K++ V +++EP+S+ETPIG++E Sbjct: 472 MIEQINRLNRETRYLIQVLGKDPTDEELSDRLGWELKKVKTVKSVSREPVSLETPIGEEE 531 Query: 516 DSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEE 575 DS L DFIED ++ P + + L+ +L L RE +V++MRFG++ TLEE Sbjct: 532 DSVLSDFIEDKAIKNPANHTSFVVLQDQIRAILGTLPEREQEVVKMRFGLEDGYSLTLEE 591 Query: 576 VGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 VG F+VTRERIRQIE+KALR+L++P +++ L+ +L+D Sbjct: 592 VGLHFNVTRERIRQIESKALRRLKNPKKTQKLKDYLED 629 >UniRef50_A4JT57 RNA polymerase sigma factor n=14 Tax=Burkholderia cepacia complex RepID=A4JT57_BURVG Length = 628 Score = 305 bits (781), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 202/609 (33%), Positives = 317/609 (52%), Gaps = 13/609 (2%) Query: 7 SQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLM 66 + L L++ G +G++T+ ++ D LP+D ++ M+ ++GI V + A A + Sbjct: 28 AHLHALISTGLTRGFVTHGDIIDALPDDDAHQGGVDATAAMLRELGIAVSDGAHAAGWTL 87 Query: 67 --LAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIE 124 + T A A L++ E RTTDPVR+Y+REMG LLTR+ EI A+RIE Sbjct: 88 DRYFQPTPSARAWAEGAGALAAAELSAPRTTDPVRLYLREMGMTPLLTRDEEIMHAQRIE 147 Query: 125 DGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAE-EDLAPTATHVGS 183 G + P+A+ L+ R+E E R + + +V A+ D+AP + Sbjct: 148 RGRAASVAVLCGDPQALDALVAM--RIEIAEGRTA--ASAYVLSIADISDMAPAGGAAAA 203 Query: 184 ELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHA 243 D D D DD ADD LAR A + A R ++ G +H Sbjct: 204 SPHAGDTPADAGASTRD-DDAPADDGLCRHTVLAR--LAPIDALTAAMRAALETDG-AHG 259 Query: 244 TAQEEILK-LSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNF 302 A ++ + + R+ + + + +R R RT + + E +P Sbjct: 260 LAYRACVREAAALLGTLRMSMRALERMSEPLRTHARRQRTLHGRLARTLAE-AGVPHGAA 318 Query: 303 ITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDIN 362 + W + IA + L + E+ A + + + L + + ++ Sbjct: 319 AACVQRDGDHARWLASCIAAHPECEPALTRRAAELVDARDAIARAARTSPLPPDTIALLD 378 Query: 363 RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR 422 R+ E + A+ + +ANLRLV+SIAK+Y +RGL F DLIQEGNIGL+KA+D++++R Sbjct: 379 ARLDTIERAMQPARMGLFDANLRLVVSIAKRYPDRGLPFADLIQEGNIGLLKAIDRYDHR 438 Query: 423 RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEE 482 RG++FSTYATWWIRQAIT ++AD RTIR+P H ++ INKL RI+R+ Q G TP E Sbjct: 439 RGFRFSTYATWWIRQAITHALADLGRTIRVPTHTVDAINKLTRIAREHRQRSGAAATPHE 498 Query: 483 LAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRA 542 LA +M P DK+R ++ I KEP+S + P+ + + D D + P D+A LR Sbjct: 499 LAVQMGEPLDKVRDLMSIVKEPMSADAPVSPEGEMTFVDVAPDVSTPSPEDAAGAAQLRD 558 Query: 543 ATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 602 ++ L AREA VLR+R+G+ + +L ++G+Q +++ ER+RQIEA AL +LR Sbjct: 559 TIAAMIGRLPAREATVLRLRYGLHADEGCSLRDIGRQLNLSAERVRQIEASALARLRASD 618 Query: 603 RSEVLRSFL 611 +VLR+F+ Sbjct: 619 GLDVLRAFI 627 >UniRef50_D2R6R0 RNA polymerase, sigma 70 subunit, RpoD subfamily n=7 Tax=Planctomycetaceae RepID=D2R6R0_9PLAN Length = 544 Score = 305 bits (780), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 142/237 (59%), Positives = 186/237 (78%) Query: 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 434 AK+++ NLRLV+SIAKKY NRGL FLDLIQEGN GLM+AVDK+EYRRG+KFSTYATWW Sbjct: 303 AKRQLSSGNLRLVVSIAKKYRNRGLSFLDLIQEGNTGLMRAVDKYEYRRGFKFSTYATWW 362 Query: 435 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKI 494 IRQAITR+IADQARTIRIPVHMI+ ++KL + +++LQE+GREPT EE+ + +P +++ Sbjct: 363 IRQAITRAIADQARTIRIPVHMIDVLSKLRNVQKKLLQELGREPTTEEVTALVDLPLEEV 422 Query: 495 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAR 554 ++VL I + P+S++ P+GD EDS G+FIEDT + P+ AT LR +L LT R Sbjct: 423 KRVLDIGRHPVSLDRPVGDSEDSSFGEFIEDTASDNPVLCATNGILRERIDGLLKTLTWR 482 Query: 555 EAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 E +++R+R+G+ YTLEEVG+ F VTRER+RQIEAKA+RKL+HP RS+ L FL Sbjct: 483 EREIIRLRYGLCDGYTYTLEEVGRIFKVTRERVRQIEAKAVRKLQHPVRSKQLEGFL 539 Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 71/119 (59%), Gaps = 10/119 (8%) Query: 8 QLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP--DADDL 65 +LK LV +G QGYLTY +VN++LP+ V+ +++++++ + GI+++++ P Sbjct: 7 ELKELVAKGNTQGYLTYEDVNNYLPDQDVNPEKLDNLLVALEHAGIELVDQPPVEPGKPR 66 Query: 66 MLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIE 124 + +D A L ES+ +DP+R+Y+ +M + LL+R+ EI +AK+IE Sbjct: 67 LFVPRESD-------AVPLKPEESK-KLNSDPIRLYLSQMAEIPLLSRQEEISLAKKIE 117 >UniRef50_Q1J156 RNA polymerase sigma factor n=13 Tax=Bacteria RepID=Q1J156_DEIGD Length = 532 Score = 303 bits (776), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 157/253 (62%), Positives = 194/253 (76%), Gaps = 7/253 (2%) Query: 363 RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR 422 R+M G A A++ ++EANLRLV+SIAKKYT RGL FLDLIQEGN GL++AV+KFEYR Sbjct: 284 RQMEDGAA----ARQGLIEANLRLVVSIAKKYTGRGLGFLDLIQEGNQGLIRAVEKFEYR 339 Query: 423 RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEE 482 R YKFSTYATWWIRQAI R+IADQARTIRIPVHM+ETINKL R +RQ+ QE+ REPT EE Sbjct: 340 RRYKFSTYATWWIRQAINRAIADQARTIRIPVHMVETINKLTRTARQLQQELSREPTYEE 399 Query: 483 LAERMLMPED--KIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESL 540 +AE M D K+ +V K+++EP+S+ETPIGD++DS GDFI D L+ P+D+A L Sbjct: 400 IAEAMGPGWDAAKVEEVQKVSQEPVSLETPIGDEKDSFYGDFIPDENLDSPVDNAAKTLL 459 Query: 541 RAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLR- 599 L+ LT REA VL+ R G+ ++TLEEVG++F+VTRERIRQIE KALRKL+ Sbjct: 460 SEELEKALSKLTEREALVLKFRKGLVDGREHTLEEVGQRFNVTRERIRQIENKALRKLKY 519 Query: 600 HPSRSEVLRSFLD 612 H SR+ LR FLD Sbjct: 520 HESRTRKLRDFLD 532 Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust. Identities = 19/33 (57%), Positives = 25/33 (75%) Query: 94 TTDPVRMYMREMGTVELLTREGEIDIAKRIEDG 126 + DPVR Y+ E+G V LLT E EI +A+RIE+G Sbjct: 228 SNDPVRQYLHEIGRVPLLTLEEEIALARRIEEG 260 >UniRef50_C9LM97 RNA polymerase sigma factor n=1 Tax=Dialister invisus DSM 15470 RepID=C9LM97_9FIRM Length = 394 Score = 301 bits (771), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 148/221 (66%), Positives = 169/221 (76%) Query: 372 ARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYA 431 A AKKEM ANLRLV+SIAKKY RG+ FLDLIQEGN+GL+KAVDKF+Y +GYKFSTYA Sbjct: 158 AAEAKKEMANANLRLVVSIAKKYPGRGMPFLDLIQEGNMGLLKAVDKFDYTKGYKFSTYA 217 Query: 432 TWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPE 491 TWWIRQAITRSIADQARTIR+PVHM+ETINK+NR+ R LQE GRE T EELA+ M Sbjct: 218 TWWIRQAITRSIADQARTIRVPVHMVETINKMNRVGRHFLQEHGREATNEELAKEMETSV 277 Query: 492 DKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGL 551 +KIR+ K A++PIS+ETPIG+ EDSHLGDFIED P D A R H +L L Sbjct: 278 EKIREAKKAAQDPISLETPIGEKEDSHLGDFIEDQKTASPEDEAAATMRREQIHQLLETL 337 Query: 552 TAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEA 592 T RE V+ +R+GID T TLEEVGK F VTRERIRQIE Sbjct: 338 TEREKGVIALRYGIDDGTQRTLEEVGKYFGVTRERIRQIEG 378 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 19/134 (14%) Query: 9 LKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLML- 67 LK L + G + Y ++ E + S Q++ + + +++ G++++ E D+ Sbjct: 15 LKELQDKVNADGNIKYDDILLFTKEKSLTSKQLDSVFKALHEGGVEIIYEEDGKDEFRDG 74 Query: 68 ---------------AENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLT 112 AE DE E +S+ + I TDPVR+Y+RE GT LLT Sbjct: 75 ESEEEFEDELLEDGDAEADVDEKEWEKGDGDISADPAGI---TDPVRLYLRECGTTPLLT 131 Query: 113 REGEIDIAKRIEDG 126 E E+ +A+ IE G Sbjct: 132 SEQEMKLAQTIEIG 145 >UniRef50_D2R2I8 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2 Tax=Planctomycetaceae RepID=D2R2I8_9PLAN Length = 545 Score = 300 bits (769), Expect = 9e-80, Method: Compositional matrix adjust. Identities = 141/238 (59%), Positives = 184/238 (77%) Query: 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 434 AK+ + NLRLV+SIAKKY NRGL FLDLIQEGN GLM+AVDKFEY RGYKFSTYATWW Sbjct: 292 AKRVLSAGNLRLVVSIAKKYRNRGLSFLDLIQEGNTGLMRAVDKFEYARGYKFSTYATWW 351 Query: 435 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKI 494 IRQAITR+IADQ+RTIR+PVHMI+T++K+ ++RQ++QE+GREPTPEE+A + D Sbjct: 352 IRQAITRAIADQSRTIRVPVHMIDTMSKVRAVTRQLVQELGREPTPEEVARVAGLTLDDA 411 Query: 495 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAR 554 R VLK+A++P+S++ P+GD +DS+ G+F+ D E PL ++L+ + + GL R Sbjct: 412 RCVLKMARQPLSLDQPVGDHDDSYFGEFLADHREEDPLYDTHQQALKHQIEEAMQGLNYR 471 Query: 555 EAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 E ++LR+R+G+ YTLEEVGK F VTRER+RQIE KA+RKL+ P R+ L SFLD Sbjct: 472 EREILRLRYGLTDGYAYTLEEVGKIFSVTRERVRQIETKAVRKLQQPYRNRSLTSFLD 529 >UniRef50_B4DC14 RNA polymerase sigma factor n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DC14_9BACT Length = 479 Score = 298 bits (762), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 145/246 (58%), Positives = 184/246 (74%) Query: 365 MSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRG 424 M + KA A+ EMVE NLRLV+SIA++Y NRG FLDLIQEGNIGLM+AV++FEYRRG Sbjct: 232 MKRWQRKALEARTEMVECNLRLVVSIAREYQNRGQPFLDLIQEGNIGLMRAVERFEYRRG 291 Query: 425 YKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELA 484 YKF+T ATWWIRQAI+RSIA+QARTIRIP HMI+ + KL R+ RQM QE GR+PT E+LA Sbjct: 292 YKFATCATWWIRQAISRSIANQARTIRIPTHMIDLLAKLIRVQRQMTQESGRDPTAEDLA 351 Query: 485 ERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAAT 544 + +P ++R +LK+A+EPIS+ TP+G++ S LGDFIED ++E P A LR Sbjct: 352 GELHLPLRRVRALLKMAEEPISIHTPVGEEGGSRLGDFIEDHSVEDPSKQAAVAMLREKI 411 Query: 545 HDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRS 604 + VL LT RE ++L RFG+ + TLEE+G+ F VTRER+RQIEAKALRK+RHP R Sbjct: 412 NAVLHTLTEREREILEQRFGLIDGRERTLEEIGRHFKVTRERVRQIEAKALRKMRHPERR 471 Query: 605 EVLRSF 610 L+ Sbjct: 472 RQLQGL 477 >UniRef50_C1CW22 RNA polymerase sigma factor n=3 Tax=Deinococci RepID=C1CW22_DEIDV Length = 547 Score = 297 bits (761), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 151/241 (62%), Positives = 187/241 (77%), Gaps = 3/241 (1%) Query: 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 434 A++ ++EANLRLV+SIAKKYT RGL FLDLIQEGN GL++AV+KFEYRR YKFSTYATWW Sbjct: 307 ARQGLIEANLRLVVSIAKKYTGRGLGFLDLIQEGNQGLIRAVEKFEYRRRYKFSTYATWW 366 Query: 435 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPED-- 492 IRQAI R+IADQARTIRIPVHM+ETINKL R +RQ+ QE+ RE T EE+AE M D Sbjct: 367 IRQAINRAIADQARTIRIPVHMVETINKLTRTARQLQQELSREATHEEIAEAMGPGWDAA 426 Query: 493 KIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLT 552 K+ +V K+++EP+S+ETPIGD++DS GDFI D L+ P+++A L L+ LT Sbjct: 427 KVEEVQKVSQEPVSLETPIGDEKDSFYGDFIPDENLDSPVENAAKTLLSEELEKALSKLT 486 Query: 553 AREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLR-HPSRSEVLRSFL 611 REA VL+ R G+ ++TLEEVG++F VTRERIRQIE KALRKL+ H SR+ LR FL Sbjct: 487 EREAMVLKFRKGLVDGREHTLEEVGQRFSVTRERIRQIENKALRKLKYHESRTRKLRDFL 546 Query: 612 D 612 D Sbjct: 547 D 547 Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust. Identities = 19/33 (57%), Positives = 25/33 (75%) Query: 94 TTDPVRMYMREMGTVELLTREGEIDIAKRIEDG 126 + DPVR Y+ E+G V LLT E EI +A+RIE+G Sbjct: 244 SNDPVRQYLHEIGRVSLLTLEEEIALARRIEEG 276 >UniRef50_P26683 RNA polymerase sigma factor rpoD n=19 Tax=cellular organisms RepID=RPOD_ANASP Length = 390 Score = 297 bits (760), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 147/248 (59%), Positives = 192/248 (77%), Gaps = 5/248 (2%) Query: 364 RMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRR 423 R+ IG RRAK +MV++NLRLV+SIAKKY NRGL F DLIQEG++GL++A +KF++ + Sbjct: 147 RLHIG----RRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEK 202 Query: 424 GYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEEL 483 GYKFSTYATWWIRQAITR+IADQ+RTIR+PVH+ ETI+++ + ++ + QEMGR+PT EE+ Sbjct: 203 GYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEI 262 Query: 484 AERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAA 543 A RM M +K+R + K A+ PIS+ETPIG +EDS LGDFIE E P D + LR Sbjct: 263 ATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDG-ETPEDQVSKNLLRED 321 Query: 544 THDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 603 VL L+ RE VLR+R+G+D TLEE+G+ F+VTRERIRQIEAKALRKLRHP+R Sbjct: 322 LEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNR 381 Query: 604 SEVLRSFL 611 + VL+ ++ Sbjct: 382 NSVLKEYI 389 >UniRef50_Q3AWQ6 RNA polymerase sigma factor n=5 Tax=Chroococcales RepID=Q3AWQ6_SYNS9 Length = 451 Score = 296 bits (758), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 147/251 (58%), Positives = 193/251 (76%), Gaps = 5/251 (1%) Query: 361 INRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE 420 RR+ +G RRAK++MV++NLRLV+SIAKKY NRGL F DLIQEG++GL++A +KF+ Sbjct: 205 FRRRLMLG----RRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 260 Query: 421 YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTP 480 + +GYKFSTYATWWIRQAITR+IADQ+RTIR+PVH+ ETI+++ + ++ + QE GR+PT Sbjct: 261 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 320 Query: 481 EELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESL 540 EE+AE M M +K+R + K A+ PIS+ETPIG +EDS LGDFIE +E P L Sbjct: 321 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIE-ADIENPEQDVAKNLL 379 Query: 541 RAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 600 R VLA L+ RE VLR+R+G+D TLEE+G+ FDVTRERIRQIEAKALRKLRH Sbjct: 380 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 439 Query: 601 PSRSEVLRSFL 611 P+R+ VL+ ++ Sbjct: 440 PNRNGVLKEYI 450 >UniRef50_B5YKM1 RNA polymerase sigma factor n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKM1_THEYD Length = 479 Score = 296 bits (758), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 142/287 (49%), Positives = 205/287 (71%), Gaps = 4/287 (1%) Query: 327 SEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRL 386 +++L ++ +E+H ++K IE E+GL I+++K+I +++ + K E++ NLRL Sbjct: 191 TKQLENLYKEIHAEIKK---IENESGLKIDELKNIWQKIYKAKCLVEDTKNELITRNLRL 247 Query: 387 VISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQ 446 V++IAK Y RGL LDLI+EGNIGLMKAVDKF+Y +G+KFSTYATWWIRQAITR++ DQ Sbjct: 248 VVNIAKNYVGRGLPLLDLIEEGNIGLMKAVDKFKYEKGFKFSTYATWWIRQAITRALIDQ 307 Query: 447 ARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPIS 506 +TIR+PVHM+E N++ + SR++ Q++GREP EE+AE++ +P K+ +V + ++PI Sbjct: 308 TKTIRVPVHMMEFYNRVTKASRELTQQLGREPNNEEIAEKLGVPVRKVEEVFRAIQDPIG 367 Query: 507 METPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGID 566 ++TPIG DED+ L DFI D T P+ A L +L LT +E KV++MRFGI Sbjct: 368 LQTPIG-DEDTELEDFIGDKTSPSPVSEAERTELSEHIQRILKTLTPKEEKVIKMRFGIG 426 Query: 567 MNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 + D+TLEEVG+ +TRER+RQIE KALRKL+HPSR +L+ D Sbjct: 427 EDRDHTLEEVGRYLSITRERVRQIETKALRKLKHPSRMRLLKMLTSD 473 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 66/123 (53%), Gaps = 17/123 (13%) Query: 12 LVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLAENT 71 +V GK++G LTY E+N+ LP + ++IED+I +++DMG++V+ Sbjct: 10 IVNLGKKRGKLTYDEINEALPSEYYSPEEIEDLIDVLSDMGVRVV--------------- 54 Query: 72 ADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQ 131 ++ E E D V+ Y MG + +LT+E E+++AK++++G + ++ Sbjct: 55 --DEDEEEVFLEEEEEIEEEEHVEDLVQAYFNSMGDIPILTKEEEVELAKKLQEGKSIIK 112 Query: 132 CSV 134 +V Sbjct: 113 ETV 115 >UniRef50_A6CE36 RNA polymerase sigma factor n=6 Tax=Planctomycetales RepID=A6CE36_9PLAN Length = 588 Score = 295 bits (756), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 151/280 (53%), Positives = 197/280 (70%), Gaps = 9/280 (3%) Query: 338 HRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKAR-----RAKKEMVEANLRLVISIAK 392 HR L++ ++ E T + +E +D R E K R AK+++ NLRLV+SIAK Sbjct: 282 HRLLER--ELSELTIMVVETSEDFQTRSR--EIKRRFDDWTEAKQQLSGGNLRLVVSIAK 337 Query: 393 KYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRI 452 KY NRGL FLDLIQEGN GLM+ V+K+EYRRGYKFSTYATWWIRQAITR++AD ARTIRI Sbjct: 338 KYRNRGLSFLDLIQEGNAGLMRGVEKYEYRRGYKFSTYATWWIRQAITRAVADHARTIRI 397 Query: 453 PVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIG 512 PVHM ++I+ L S Q+ QE GREPT EELA+ + + ++ +++K K PIS++TP+G Sbjct: 398 PVHMFQSISTLKARSEQIRQETGREPTMEELADSVGLGVEETERIMKTWKHPISLDTPVG 457 Query: 513 DDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYT 572 + EDS GDF+ED P D+A E L+ VL LT RE +++R+R+G+ YT Sbjct: 458 ESEDSSFGDFLEDGHESSPADAAMREMLKDKIEHVLKSLTYREREIIRLRYGLGDGYSYT 517 Query: 573 LEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 LEE G+ F VTRERIRQIE+KALRKL+H +RS LR F+D Sbjct: 518 LEETGRIFKVTRERIRQIESKALRKLQHQTRSAHLRGFVD 557 Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 90/161 (55%), Gaps = 13/161 (8%) Query: 7 SQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDAD--- 63 + L LL ++QG+LT+ +V+ LP++ D IE I+ + + G+ ++++ P+AD Sbjct: 6 ANLNLLFQEAEKQGFLTFQQVHTFLPDEGGDPSLIEYIVVGLEERGLDLIDD-PNADIDD 64 Query: 64 -DLMLAENTAD--EDAAEAAAQVLSS-----VESEIGRTT-DPVRMYMREMGTVELLTRE 114 ++ +++A+ D A+ A + VE E ++ DP+RMY+ +MG + LL+R Sbjct: 65 EEVASVDSSANTHSDVAQGADEDSDDASSSIVEPETSLSSRDPIRMYLSQMGNIPLLSRS 124 Query: 115 GEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEE 155 EI +AK+IE + + +V E A+ ++ ++V A E Sbjct: 125 REIFLAKKIEITRKRFRRTVLESDFALKIAIDTLEKVFAGE 165 >UniRef50_Q47RL2 RNA polymerase sigma factor n=3 Tax=Bacteria RepID=Q47RL2_THEFY Length = 388 Score = 293 bits (750), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 137/237 (57%), Positives = 187/237 (78%), Gaps = 1/237 (0%) Query: 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 434 AK+ ++E+NLRLV+S+AK+Y RGL LDLIQEGN+GL++AV+KF+Y RGYKFSTYATWW Sbjct: 152 AKRRLIESNLRLVVSVAKRYLGRGLALLDLIQEGNLGLIRAVEKFDYTRGYKFSTYATWW 211 Query: 435 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKI 494 IRQAITR+IADQARTIR+PVHM+E+IN+L R R++ QE+GREPT EL+ + + D++ Sbjct: 212 IRQAITRAIADQARTIRVPVHMVESINRLARTRRRLHQELGREPTLHELSRELNVDHDRV 271 Query: 495 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAR 554 ++ ++++EPIS+ TPIG +EDS GDFIEDT P+++A L+ VL GL+ R Sbjct: 272 VEIHRVSQEPISLHTPIG-EEDSAFGDFIEDTDAVPPVEAAAFVMLQDQLAQVLGGLSER 330 Query: 555 EAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 E +V+ +RFG++ +TLEEVG++F VTRERIRQIE+K L KLR PSR+ +LR +L Sbjct: 331 EQRVITLRFGLEDGKPHTLEEVGRKFGVTRERIRQIESKTLAKLRQPSRARILRDYL 387 >UniRef50_P38023 RNA polymerase sigma factor rpoD1 n=7 Tax=cellular organisms RepID=RPOD1_SYNE7 Length = 399 Score = 291 bits (746), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 141/237 (59%), Positives = 186/237 (78%), Gaps = 1/237 (0%) Query: 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 434 AK +MV++NLRLV+SIAKKY NRGL F DLIQEG++GL++A +KF++ +GYKFSTYATWW Sbjct: 163 AKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 222 Query: 435 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKI 494 IRQAITR+IADQ+RTIR+PVH+ ETI+++ + ++ + QEMGR+PT EE+A RM M +K+ Sbjct: 223 IRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKL 282 Query: 495 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAR 554 R + K A+ PIS+ETPIG +EDS LGDFIE E P D LR VL+ L+ R Sbjct: 283 RFIAKSAQLPISLETPIGKEEDSRLGDFIEADG-ETPEDEVAKNLLREDLEGVLSTLSPR 341 Query: 555 EAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 E VLR+R+G+D TLEE+G+ F+VTRERIRQIEAKALRKLRHP+R+ +L+ ++ Sbjct: 342 ERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 398 >UniRef50_B1WS32 RNA polymerase sigma factor n=5 Tax=Chroococcales RepID=B1WS32_CYAA5 Length = 416 Score = 291 bits (745), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 144/251 (57%), Positives = 192/251 (76%), Gaps = 5/251 (1%) Query: 361 INRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE 420 RR+ +G R+AK +MV +NLRLV+SIAKKY NRGL F DLIQEG++GL++A +KF+ Sbjct: 170 FKRRLYLG----RKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 225 Query: 421 YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTP 480 + +GYKFSTYATWWIRQAITR+IADQ+RTIR+PVH+ ETI+++ + ++ + QEM R+PT Sbjct: 226 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTE 285 Query: 481 EELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESL 540 EE+A RM M +K+R + K A+ PIS+ETPIG +EDS LGDFIE E P D + L Sbjct: 286 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG-ETPEDEVSKNLL 344 Query: 541 RAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 600 R +VL L+ RE VLR+R+G+D TLEE+G+ F+VTRERIRQIEAKALRKLRH Sbjct: 345 REDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 404 Query: 601 PSRSEVLRSFL 611 P+R+ +L+ ++ Sbjct: 405 PNRNSILKEYI 415 >UniRef50_B2KBW8 RNA polymerase sigma factor n=2 Tax=Elusimicrobia RepID=B2KBW8_ELUMP Length = 571 Score = 290 bits (741), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 135/238 (56%), Positives = 186/238 (78%) Query: 376 KKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 435 K ++++ANLRLV+SIAKK+ N L+ DLIQEG +GLMKAV+KFEY+RG+KFSTYATWWI Sbjct: 334 KLKLIKANLRLVVSIAKKHVNSNLELSDLIQEGGLGLMKAVEKFEYKRGFKFSTYATWWI 393 Query: 436 RQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIR 495 RQ+I R+IADQA TIRIPVHM E ++KL +++ + QE GREP+ E+ ++ + + +K++ Sbjct: 394 RQSINRAIADQANTIRIPVHMKELVSKLTKVTNKFRQEHGREPSLEDYSKSLRLSMEKVK 453 Query: 496 KVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTARE 555 VLKI ++PIS+ TP+G+DEDS+L DFIED P +A+ + +VL L+ RE Sbjct: 454 GVLKIMQDPISLSTPVGEDEDSNLEDFIEDKAGANPTVTASDFLRKQEVSEVLNTLSERE 513 Query: 556 AKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 AK++R+RFGID TLEEVGK F+VTRER+RQIEAKA+RKLRHPSR+++L+ + D+ Sbjct: 514 AKIIRLRFGIDSGYPRTLEEVGKMFNVTRERVRQIEAKAIRKLRHPSRTKMLKDYSDE 571 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 12/154 (7%) Query: 9 LKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLA 68 K LV GKE G+LT E+N L + ++ I+ ++ + D+GIQV++ + +A Sbjct: 9 FKDLVEVGKENGFLTLDEINRSLTSSSMSAEDIDGLMGTLEDLGIQVVDRKK-YKSVAMA 67 Query: 69 ENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGIN 128 E A + A + ++ +RMY+ EMG V LL+R+ EI +A+ + + Sbjct: 68 EKEAYTEEFMANPDI-----------SNSIRMYLSEMGKVPLLSRDEEITLARNVREREK 116 Query: 129 QVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLI 162 +++ V E P + + + V+ EE +L+ Sbjct: 117 ELRKLVLESPITMREICNWEELVDQEEMTTKELM 150 >UniRef50_P74565 RNA polymerase sigma factor rpoD n=23 Tax=cellular organisms RepID=RPOD_SYNY3 Length = 425 Score = 289 bits (740), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 140/237 (59%), Positives = 187/237 (78%), Gaps = 1/237 (0%) Query: 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 434 AK +MV++NLRLV+SIAKKY NRGL F DLIQEG++GL++A +KF++ +GYKFSTYATWW Sbjct: 189 AKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 248 Query: 435 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKI 494 IRQAITR+IADQ+RTIR+PVH+ ETI+++ + ++ + QEM R+PT EE+AE+M M +K+ Sbjct: 249 IRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIAEKMEMTIEKL 308 Query: 495 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAR 554 R + K A+ PIS+ETPIG +EDS LGDFIE E P D + LR +VL L+ R Sbjct: 309 RFIAKSAQLPISLETPIGKEEDSRLGDFIEADG-ETPEDEVSKNLLREDLENVLDTLSPR 367 Query: 555 EAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 E VLR+R+G+D TLEE+G+ F+VTRERIRQIEAKALRKLRHP+R+ +L+ ++ Sbjct: 368 ERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 424 >UniRef50_B7K1V2 RNA polymerase sigma factor n=13 Tax=cellular organisms RepID=B7K1V2_CYAP8 Length = 379 Score = 288 bits (737), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 144/251 (57%), Positives = 192/251 (76%), Gaps = 5/251 (1%) Query: 361 INRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE 420 RR+ +G R+AK +MV +NLRLV+SIAKKY NRGL F DLIQEG++GL++A +KF+ Sbjct: 133 FQRRLYLG----RKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 188 Query: 421 YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTP 480 + +GYKFSTYATWWIRQAITR+IADQ+RTIR+PVH+ ETI+++ + ++ + QEM R+PT Sbjct: 189 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTE 248 Query: 481 EELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESL 540 EE+A RM M +K+R + K A+ PIS+ETPIG +EDS LGDFIE E P D + L Sbjct: 249 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG-ENPEDEVSKNLL 307 Query: 541 RAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 600 R +VL L+ RE VLR+R+G+D TLEE+G+ F+VTRERIRQIEAKALRKLRH Sbjct: 308 REDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRH 367 Query: 601 PSRSEVLRSFL 611 P+R+ +L+ ++ Sbjct: 368 PNRNSILKEYI 378 >UniRef50_A8S2D4 RNA polymerase sigma factor n=2 Tax=Clostridium RepID=A8S2D4_9CLOT Length = 406 Score = 288 bits (736), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 140/268 (52%), Positives = 199/268 (74%), Gaps = 3/268 (1%) Query: 344 LQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLD 403 L++I LT E+ D+ RR S G+ +A R ++VEANLRLV+SIAK+YT RG+ FLD Sbjct: 141 LKEIGSIALLTPEEESDLARRKSEGDVEAGR---KLVEANLRLVVSIAKRYTGRGMSFLD 197 Query: 404 LIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKL 463 L+QEGN+GLMKAV+KF+Y +GY+ STYATWW++Q+ITRS+ADQ+RTIR+PVHM+E +NK+ Sbjct: 198 LVQEGNLGLMKAVEKFDYAKGYRLSTYATWWVKQSITRSLADQSRTIRLPVHMVEAVNKI 257 Query: 464 NRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFI 523 R R + ++GREP+ EE+AE + M ++ ++++ + + +S+ETP+GD+E S+LGDF+ Sbjct: 258 RRAQRSLSVKLGREPSMEEVAEEVNMSGKRVAELIQASGDTVSLETPVGDEEGSNLGDFV 317 Query: 524 EDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVT 583 D D A + LR +L GL RE +V+ +RFG++ TLEEVGK+F+VT Sbjct: 318 ADDANASTEDKAESFLLREEIDSMLQGLNPREREVIILRFGLETGHPLTLEEVGKRFNVT 377 Query: 584 RERIRQIEAKALRKLRHPSRSEVLRSFL 611 RERIRQIE ALRKLR+PS+S+ +R FL Sbjct: 378 RERIRQIETAALRKLRNPSKSKKIRDFL 405 >UniRef50_Q1ATP3 RNA polymerase sigma factor n=2 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1ATP3_RUBXD Length = 366 Score = 286 bits (733), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 133/240 (55%), Positives = 184/240 (76%) Query: 372 ARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYA 431 +R+K ++VEANLRLV+SIAKKY NRG+ FLDLIQEGNIGL++A +KF+YR+G+KFSTYA Sbjct: 126 CKRSKDKLVEANLRLVVSIAKKYRNRGVSFLDLIQEGNIGLIRAAEKFDYRKGFKFSTYA 185 Query: 432 TWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPE 491 TWWIRQAITR+IAD+ RTIRIPVHM+E +NK +R R+M Q +GREPT EE+AE + +P Sbjct: 186 TWWIRQAITRAIADKGRTIRIPVHMVEKVNKYHRTQRRMTQALGREPTDEEVAEELGVPV 245 Query: 492 DKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGL 551 +++ ++ +I++ IS+ETP+GDDE S LGDF+ED + P D+ + L+ + L L Sbjct: 246 EEVLRLQEISQRSISLETPVGDDESSSLGDFLEDASAVTPTDAVSESLLKLHLREALDEL 305 Query: 552 TAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 RE +++ MRFG+ + TLEEVG++FD+TRER+RQI+ K L LR R++ LR +L Sbjct: 306 PERERQIIEMRFGMKDDRPRTLEEVGREFDITRERVRQIQMKTLNLLREQRRTQNLREYL 365 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 65/125 (52%), Gaps = 5/125 (4%) Query: 12 LVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLAENT 71 L+++G+ QG+L+ +V D + E + D+ E++ + + I +++E + + E Sbjct: 16 LLSKGRSQGFLSAEDVADLVREGDLSPDEAEELYATLEEEDITLVDEELEGAAEVTPERA 75 Query: 72 ADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQ 131 A + A+Q+ +V T D +RMY+ E+G V LLT EI +AK I G + + Sbjct: 76 AGREGDNPASQLAHAVA-----TGDSIRMYLAEIGRVPLLTHADEIRLAKAISRGCKRSK 130 Query: 132 CSVAE 136 + E Sbjct: 131 DKLVE 135 >UniRef50_UPI0001AF1456 RNA polymerase sigma factor n=2 Tax=Streptomyces RepID=UPI0001AF1456 Length = 430 Score = 286 bits (733), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 135/253 (53%), Positives = 193/253 (76%), Gaps = 4/253 (1%) Query: 360 DINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF 419 D++R + +G R AK+ ++EANLRLV+S+AK+Y RGL LDL+QEGN+GL++AV+KF Sbjct: 182 DLDRLVVMG----RMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKF 237 Query: 420 EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPT 479 +Y RGYKFSTYATWWIRQA++R++ADQARTIR+PVH++E IN++ R+ R+MLQE GREPT Sbjct: 238 DYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGREPT 297 Query: 480 PEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTES 539 PEE+A + +P +++ +VL++A+EP+S+ P+G+++D LGD IED P++SA Sbjct: 298 PEEVAAHLDLPPERVGEVLRLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFLL 357 Query: 540 LRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLR 599 LR VL+ L RE KV+++R+G+ TLEE+G+ F VTRERIRQIE+K L KLR Sbjct: 358 LREHLEAVLSTLGERERKVVQLRYGLVDGRPRTLEEIGRIFGVTRERIRQIESKTLNKLR 417 Query: 600 HPSRSEVLRSFLD 612 + ++ LR +LD Sbjct: 418 DHAFADQLRGYLD 430 >UniRef50_Q2J784 RNA polymerase sigma factor n=6 Tax=Actinomycetales RepID=Q2J784_FRASC Length = 422 Score = 285 bits (729), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 133/253 (52%), Positives = 189/253 (74%) Query: 360 DINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF 419 D+ R + + AK+++V ANLRLV+S+AKKY+ RG+ LDL+QEGN+GL++AV+KF Sbjct: 170 DLRRDLGLLVKDGHAAKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQEGNLGLIRAVEKF 229 Query: 420 EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPT 479 +Y +GYKFSTYATWWIRQAI R++ADQARTIRIPVH++E INK+ R+ RQ++ +GREPT Sbjct: 230 DYAKGYKFSTYATWWIRQAIGRALADQARTIRIPVHVVEQINKITRLQRQLVSTLGREPT 289 Query: 480 PEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTES 539 EELA + MP +++ ++ + A++ +S+ET +GDD DS LGDFIED+ P D+A+ + Sbjct: 290 DEELALELDMPIEQVVELRRYAQDTVSLETSVGDDGDSVLGDFIEDSDATSPADAASYGA 349 Query: 540 LRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLR 599 ++ +VL GL+ RE +V+R+RFG+ +TL EVG + +TRERIRQIE LR+LR Sbjct: 350 MQDEIENVLGGLSPREREVMRLRFGLADGKQHTLAEVGNRLGLTRERIRQIERDTLRELR 409 Query: 600 HPSRSEVLRSFLD 612 P+ + LR FLD Sbjct: 410 KPAVAGRLREFLD 422 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 61/116 (52%), Gaps = 16/116 (13%) Query: 12 LVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLAENT 71 ++ RG+E G ++ +E+ D L + + + +I +N +GI++++E +DD A + Sbjct: 56 VIARGREAGEISRSELRDVLESADIGIELLPALIARLNAVGIELLDEEEASDDATAASRS 115 Query: 72 ADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGI 127 E A T D VRMY+RE+G V LL E++++KR+E G+ Sbjct: 116 TAEHAG----------------TADLVRMYLREIGKVPLLNAAQEVELSKRVEAGL 155 >UniRef50_A7NGG2 RNA polymerase sigma factor n=15 Tax=Chloroflexi (class) RepID=A7NGG2_ROSCS Length = 405 Score = 285 bits (729), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 141/280 (50%), Positives = 205/280 (73%), Gaps = 5/280 (1%) Query: 333 VSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAK 392 ++++V R Q ++++ +E+++ ++R + G+A A++ +++ANLRLV+SIAK Sbjct: 131 LAQQVERGEQANERLQNGDYTPVERLQ-LHRWVQEGQA----ARERLIQANLRLVVSIAK 185 Query: 393 KYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRI 452 KY RG+ LDLIQEGNIGLM+A +KF+YR+GYKFSTYATWWIRQAITR IADQ+RTIR+ Sbjct: 186 KYLGRGMSLLDLIQEGNIGLMRATEKFDYRKGYKFSTYATWWIRQAITRVIADQSRTIRL 245 Query: 453 PVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIG 512 PVH+ ETIN++ R S ++ Q GR+PTP+E+A + +P +K+R+VL+ A++ IS+ETPIG Sbjct: 246 PVHVGETINRVMRTSNRIQQTTGRDPTPDEIALELGIPVEKVRRVLEAARQTISLETPIG 305 Query: 513 DDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYT 572 + DS L DFIED P++SA++ LR L L RE +++++R+G+ T Sbjct: 306 PEGDSVLADFIEDGKGATPMESASSHILREQIDSALEKLPERERRIIQLRYGLYDGHYRT 365 Query: 573 LEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 LEEVG++F +TRERIRQIEA+ LRKLRHP LR +L+ Sbjct: 366 LEEVGREFGITRERIRQIEARVLRKLRHPHYGRGLRGYLE 405 >UniRef50_Q0RDY7 RNA polymerase sigma factor n=5 Tax=Actinomycetales RepID=Q0RDY7_FRAAA Length = 373 Score = 284 bits (726), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 139/281 (49%), Positives = 201/281 (71%), Gaps = 4/281 (1%) Query: 332 DVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIA 391 ++S+ V L ++E + L + +D+ + G A AK+++V ANLRLV+S+A Sbjct: 97 ELSKRVEAGLFAEHKLESDPDLPADLRRDLGLLVKDGHA----AKQQLVSANLRLVVSVA 152 Query: 392 KKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIR 451 KKY+ RG+ LDL+QEGN+GL++AV+KF+Y +GYKFSTYATWWIRQAI R++ADQARTIR Sbjct: 153 KKYSGRGMTLLDLVQEGNLGLIRAVEKFDYAKGYKFSTYATWWIRQAIGRALADQARTIR 212 Query: 452 IPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPI 511 IPVH++E INK+ R+ RQ++ +GREPT EELA + MP +++ ++ + A++ +S+ET + Sbjct: 213 IPVHVVEQINKITRLQRQLVSTLGREPTDEELALELDMPIEQVVELRRYAQDTVSLETSV 272 Query: 512 GDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDY 571 GDD DS LGDFIED+ P D+A+ +++ +VL GL RE +V+R+RFG+ + Sbjct: 273 GDDGDSVLGDFIEDSDATSPADAASYGAMQDEIENVLGGLNPREREVMRLRFGLADGKQH 332 Query: 572 TLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 TL EVG + +TRERIRQIE LR+LR P+ + LR FLD Sbjct: 333 TLAEVGNRLGLTRERIRQIERDTLRELRKPAVAGRLREFLD 373 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 16/116 (13%) Query: 12 LVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLAENT 71 ++ RG+E G ++ +E+ D L + + + +I ++ G++++EE DD+ A + Sbjct: 7 VIARGREAGEISRSELRDALESADIGLELLPALIAKLSAAGVELLEEEETTDDVTAATRS 66 Query: 72 ADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGI 127 E A T D VRMY+RE+G V LL E++++KR+E G+ Sbjct: 67 TAEHAG----------------TADLVRMYLREIGKVPLLNAAQEVELSKRVEAGL 106 >UniRef50_A5UPS4 RNA polymerase sigma factor n=4 Tax=Chloroflexaceae RepID=A5UPS4_ROSS1 Length = 402 Score = 283 bits (723), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 131/243 (53%), Positives = 181/243 (74%) Query: 370 AKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFST 429 A+ A++ +++ANLRLV+SIAKKYT+ GL +DL+QEGNIGLM+AV+KF+Y +G+KFST Sbjct: 160 AQGNEARQHLIQANLRLVVSIAKKYTSYGLTMMDLVQEGNIGLMRAVEKFDYTKGHKFST 219 Query: 430 YATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLM 489 YATWWIRQAITR+IADQ+RTIR+PVHM E I+++ R S ++ Q M REPTPEE+A+ M + Sbjct: 220 YATWWIRQAITRAIADQSRTIRLPVHMGEAISQVKRTSHKLQQTMQREPTPEEIADAMGI 279 Query: 490 PEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLA 549 K+R+ L+ + P+S+E P+G + + +GDFIED + P ++A LR +VL Sbjct: 280 SSTKVRRTLEASMHPLSLEMPVGQEGEGRMGDFIEDDRISTPAEAAAASMLREQLEEVLQ 339 Query: 550 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRS 609 L RE K++++R+G+ TLEEVG +F +TRERIRQIEA ALRKLRHP + LR Sbjct: 340 KLPERERKIIQLRYGLKDGRYRTLEEVGMEFGITRERIRQIEAVALRKLRHPHLGKKLRG 399 Query: 610 FLD 612 +LD Sbjct: 400 YLD 402 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 65/121 (53%), Gaps = 15/121 (12%) Query: 9 LKLLVTRGKEQGYLTYAEVNDHLPE---DIVDSDQIEDIIQMINDMGIQVMEEAPDADDL 65 L+ L+ G+ +G+LTY E+ + LP+ I D DQ+ +Q GI+V+E D D Sbjct: 26 LEYLLEIGRTRGFLTYNEILEALPQPEHHIADVDQLYASLQA---EGIRVVETPLDIHD- 81 Query: 66 MLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIED 125 + +D A L+ V + DPVRMY++E+G V LL+ E E+ +AK +E Sbjct: 82 ---NGSTGDDELLADMPDLTDVALD-----DPVRMYLQEIGQVPLLSAEQEVMLAKAMEA 133 Query: 126 G 126 G Sbjct: 134 G 134 >UniRef50_D1CB24 RNA polymerase sigma factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CB24_THET1 Length = 463 Score = 282 bits (722), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 139/265 (52%), Positives = 187/265 (70%), Gaps = 5/265 (1%) Query: 354 TIEQVKDINRRMSIGEAKARR-----AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEG 408 T+ QV N+ + I R AK +++EAN RLV+SIAKKY RGL LDLIQEG Sbjct: 199 TVSQVLLANKSIVINHWNKVRKEGEGAKCKLIEANTRLVVSIAKKYLGRGLSLLDLIQEG 258 Query: 409 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISR 468 NIGLM+A DKF+Y RGYKFSTYATWWIRQA+TR+IADQ+RTIR+PVH+ ET++K+++ S+ Sbjct: 259 NIGLMRAADKFDYTRGYKFSTYATWWIRQAVTRAIADQSRTIRLPVHVCETVSKIHKTSQ 318 Query: 469 QMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTL 528 ++ QE+G EPT E+L+ + MP K+ ++ + +K P+S+E PIG+D DS LGDF+ED + Sbjct: 319 KLQQELGHEPTIEQLSSELGMPMKKVVQIQQASKFPVSLEAPIGEDGDSMLGDFLEDVHV 378 Query: 529 ELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIR 588 P+ A + LR + VL L +E KVL +RFG+ TLEEVG +F +TRER+R Sbjct: 379 LNPVQKAANDILREQINSVLQNLPPKERKVLELRFGLVDGKCRTLEEVGNEFAITRERVR 438 Query: 589 QIEAKALRKLRHPSRSEVLRSFLDD 613 QIE ALR+LR + LR FL+D Sbjct: 439 QIECTALRRLRENHLIKQLRDFLED 463 >UniRef50_A0LLA1 RNA polymerase sigma factor n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LLA1_SYNFM Length = 433 Score = 280 bits (716), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 131/238 (55%), Positives = 180/238 (75%), Gaps = 1/238 (0%) Query: 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 434 AK+EMV+ANLRLV+SIAK+Y RG+ F DLIQEGN+GL+KAV +F++ +G +FSTYATWW Sbjct: 197 AKQEMVKANLRLVLSIAKRYRGRGMSFDDLIQEGNLGLLKAVGRFDHTKGNRFSTYATWW 256 Query: 435 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKI 494 +RQ+I R I D+ RTIR+PVH IE N ++ ++L+E+GREP+P+E+AER +P DK+ Sbjct: 257 VRQSIIRGIYDKTRTIRLPVHFIELKNLFFKVFYELLKELGREPSPQEIAERAKLPLDKV 316 Query: 495 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAR 554 + VL +A +PIS+ETPIG+DE LGDFIED P++ + L T +L+ L R Sbjct: 317 QMVLTLAAQPISLETPIGEDE-QRLGDFIEDERAASPMEECSDRELAEITRSLLSSLQPR 375 Query: 555 EAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 E K+LR+RFGID TLE++GK F V++ERIRQIE KALRKLR+P+R L++F++ Sbjct: 376 EEKILRLRFGIDGQPAETLEKIGKTFKVSKERIRQIEKKALRKLRNPNRQSCLKTFME 433 >UniRef50_D1VBD5 RNA polymerase sigma factor n=1 Tax=Frankia sp. EuI1c RepID=D1VBD5_9ACTO Length = 424 Score = 280 bits (716), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 133/245 (54%), Positives = 185/245 (75%), Gaps = 4/245 (1%) Query: 368 GEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKF 427 GEA AK+++V ANLRLV+S+AKKY+ RG+ LDL+QEGN+GL++AV+KF+Y +GYKF Sbjct: 184 GEA----AKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQEGNLGLIRAVEKFDYAKGYKF 239 Query: 428 STYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERM 487 STYATWWIRQAI R++ADQARTIRIPVH++E INK+ R+ RQ++ +GREPT EELA + Sbjct: 240 STYATWWIRQAIGRALADQARTIRIPVHVVEQINKITRLQRQLVSTLGREPTDEELALEL 299 Query: 488 LMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDV 547 MP +++ ++ + A++ +S+ET +GDD DS LGDFIED+ P D+A+ +++ V Sbjct: 300 DMPLEQVVELRRYAQDTVSLETTVGDDGDSVLGDFIEDSDATSPADAASYGAMQDEIDHV 359 Query: 548 LAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVL 607 L L+ RE +V+R+RFG+ +TL EVG + +TRERIRQIE LR+LR P+ + L Sbjct: 360 LGNLSPREREVMRLRFGLADGKQHTLAEVGNRLGLTRERIRQIERDTLRELRKPAVAGRL 419 Query: 608 RSFLD 612 R FLD Sbjct: 420 REFLD 424 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 17/118 (14%) Query: 12 LVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLAENT 71 L+ RG++ G ++ +E+ + L V + + ++ + G++V+EE Sbjct: 55 LIARGRDSGEVSRSELREALESADVGVELLPALVARLVAAGVEVVEE------------- 101 Query: 72 ADEDAAE--AAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGI 127 ED AE AA V +E T D VRMY+RE+G V LL E++++KR+E G+ Sbjct: 102 --EDGAERSAAPSETGRVTAEHAGTADLVRMYLREIGRVPLLNAAQEVELSKRVEAGL 157 >UniRef50_P18182 RNA polymerase principal sigma factor hrdA n=6 Tax=Actinomycetales RepID=HRDA_STRCO Length = 396 Score = 280 bits (715), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 129/241 (53%), Positives = 184/241 (76%) Query: 372 ARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYA 431 R AK+ ++EANLRLV+S+AK+Y RGL LDL+QEGN+GL++AV+KF+Y RGYKFSTYA Sbjct: 156 GRLAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYA 215 Query: 432 TWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPE 491 TWWIRQA++R++ADQARTIR+PVH++E IN++ R+ R+MLQE G EPTP+E+A + + Sbjct: 216 TWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGCEPTPQEVAAHLDLAP 275 Query: 492 DKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGL 551 +++ +VL++A+EP+S+ P+G+++D LGD IED P++SA LR VL+ L Sbjct: 276 ERVGEVLRLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFLLLRQHLEAVLSTL 335 Query: 552 TAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 RE KV+++R+G+ TLEE+G+ F VTRERIRQIE+K L KLR + ++ LR +L Sbjct: 336 GERERKVVQLRYGLADGRPRTLEEIGRLFGVTRERIRQIESKTLSKLRDHAYADQLRGYL 395 Query: 612 D 612 D Sbjct: 396 D 396 >UniRef50_C7H329 RNA polymerase sigma factor n=2 Tax=Faecalibacterium prausnitzii RepID=C7H329_9FIRM Length = 461 Score = 278 bits (712), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 130/224 (58%), Positives = 173/224 (77%) Query: 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 434 A++ + EANLRLV+SIAKK+ L FLDLIQEGNIGL+KA +KF+ RG++FSTYATWW Sbjct: 224 ARRSLSEANLRLVVSIAKKHVGHNLAFLDLIQEGNIGLIKAAEKFDCDRGFRFSTYATWW 283 Query: 435 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKI 494 IRQAITR+IADQARTIRIPVHM+ETIN++ + + Q++ + G EPTPEELA+ M M +++ Sbjct: 284 IRQAITRAIADQARTIRIPVHMVETINRMRQATNQLVYQNGHEPTPEELAKAMDMSVERV 343 Query: 495 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAR 554 R++ ++A+EP S+E+P+G++EDS LGDF+ D E P +A + + L LT R Sbjct: 344 REIQRMAQEPASLESPVGEEEDSSLGDFVADENAEAPGKAADRAMVAQQINQALKSLTPR 403 Query: 555 EAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKL 598 E KV+R+RFG+D TLEEVG+ F VTRER+RQIEAKA+RKL Sbjct: 404 EEKVIRLRFGLDDGRPRTLEEVGRDFGVTRERVRQIEAKAIRKL 447 Score = 44.3 bits (103), Expect = 0.012, Method: Compositional matrix adjust. Identities = 35/138 (25%), Positives = 70/138 (50%), Gaps = 28/138 (20%) Query: 9 LKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPD------- 61 LK L+T+G +G LT E + +D +E + ++ + GI+++++ D Sbjct: 5 LKELLTKG--EGTLTAGEAKTLASQCRMD---VETLYTLLEERGIKILDDEADGDTSLDV 59 Query: 62 -------------ADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTV 108 +D+L L + D+ A E A + ++++ + DPV+ Y++++G + Sbjct: 60 EGIMAEVESAEANSDELGLGDENEDDPAEENPADLKAAMDELL---DDPVKNYLKQIGQI 116 Query: 109 ELLTREGEIDIAKRIEDG 126 LL+ E E+D++KRI G Sbjct: 117 PLLSAEQEVDLSKRIHAG 134 >UniRef50_B5YES0 RNA polymerase sigma factor n=2 Tax=Dictyoglomus RepID=B5YES0_DICT6 Length = 413 Score = 274 bits (701), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 149/333 (44%), Positives = 210/333 (63%), Gaps = 76/333 (22%) Query: 353 LTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL 412 LT E+ ++ +R+ G+ +A KK+++EANLRLV+S+AK+Y RGL FLDLIQEGN+GL Sbjct: 85 LTPEEEIELAKRVEQGDEEA---KKKLIEANLRLVVSVAKRYIGRGLSFLDLIQEGNLGL 141 Query: 413 MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISR---- 468 +KAV+KF++R+GYKFSTYATWWIRQAITR+IADQARTIRIPVHM+ET+NK+++I+R Sbjct: 142 IKAVEKFDWRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETMNKIHKITRLLTQ 201 Query: 469 ------------------QMLQEMG----------------------------------- 475 Q LQE G Sbjct: 202 NLGRKPTEEDIAKFLVIQQKLQEFGVYQESGEKISDDEIIEISKLSLEEIAKKLVEMHLK 261 Query: 476 ----REPTPEELAER-----------MLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLG 520 + PT EE+ E+ + +K+R++ + +EP+S+E P+G+DED+ L Sbjct: 262 AKNNKVPTKEEINEKAKELKHVLEEEIRQQTEKVREISMMGQEPLSLEMPVGEDEDNRLA 321 Query: 521 DFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQF 580 DF+E+ L P D A +SL+ ++L L+ RE ++L++RFG++ N TLEEVGK F Sbjct: 322 DFVENKDLS-PADIAVQKSLKKDIEELLNELSEREREILKLRFGLEDNQPRTLEEVGKLF 380 Query: 581 DVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 +VTRERIRQIEAKALR+LRHPSRS+ ++ +L+D Sbjct: 381 NVTRERIRQIEAKALRRLRHPSRSKKIKDYLED 413 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 18/31 (58%), Positives = 26/31 (83%) Query: 96 DPVRMYMREMGTVELLTREGEIDIAKRIEDG 126 DPV+MY++E+G + LLT E EI++AKR+E G Sbjct: 70 DPVKMYLKEIGKIPLLTPEEEIELAKRVEQG 100 >UniRef50_Q7NB90 RNA polymerase sigma factor n=2 Tax=Mycoplasma RepID=Q7NB90_MYCGA Length = 644 Score = 273 bits (699), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 137/244 (56%), Positives = 179/244 (73%), Gaps = 13/244 (5%) Query: 378 EMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ 437 ++V +NLRLV SIAKKY NRGL F+DLIQEG+IGLMKA+ KF Y+ G KFSTYATWWIRQ Sbjct: 398 QLVTSNLRLVTSIAKKYLNRGLDFVDLIQEGSIGLMKAISKFNYKLGNKFSTYATWWIRQ 457 Query: 438 AITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERM------LMPE 491 AITR+IADQART+RIPVHM+ETINKL + R + Q++GR+PT EEL E M P+ Sbjct: 458 AITRAIADQARTVRIPVHMVETINKLIKTERMLTQQLGRDPTLEELTEAMGGQVNGFTPK 517 Query: 492 DKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHD---VL 548 K+ + K+ +EP+S++ PIG DE+S DF++D + P TE L H + Sbjct: 518 -KVADIKKLNQEPVSLDKPIGHDEESQFVDFVKDRDILKP--DEYTEKLIVTEHINELFI 574 Query: 549 AGLTAREAKVLRMRFGID-MNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVL 607 LT +E +++RMR+G+ + TLEEVG++F+VTRERIRQIE+KALRKL+HPS++ L Sbjct: 575 NTLTKKEEQIIRMRYGLHPWHQQMTLEEVGQKFNVTRERIRQIESKALRKLKHPSKNARL 634 Query: 608 RSFL 611 RSFL Sbjct: 635 RSFL 638 >UniRef50_Q6AK94 RNA polymerase sigma factor n=3 Tax=Deltaproteobacteria RepID=Q6AK94_DESPS Length = 447 Score = 270 bits (690), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 126/238 (52%), Positives = 178/238 (74%), Gaps = 1/238 (0%) Query: 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 434 AK M+ ANLRLV+SIAK+Y ++GL DLIQEGN+GLM+AV +F+Y +G KFSTYA+WW Sbjct: 211 AKDTMIRANLRLVVSIAKRYMHQGLTLADLIQEGNLGLMRAVFRFDYTKGNKFSTYASWW 270 Query: 435 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKI 494 IRQAITR+I D+ RTIR+PVH +E ++ + + +E+GREPTP E+++ +P DKI Sbjct: 271 IRQAITRAILDKTRTIRLPVHFLELRSQFFKAFYALFKELGREPTPLEISKTTNLPMDKI 330 Query: 495 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAR 554 +L+ ++EPIS+ETP+GDD DS LGDF+E+ + P ++ L ++L+ L+ R Sbjct: 331 LSILEASREPISLETPVGDD-DSTLGDFLENQESQSPYEAVQNRELSGRVTEILSTLSDR 389 Query: 555 EAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 E K++R+RFGI +YTLEE+GK+F+V+RERIRQIE KAL +LRH SR + L+ F+D Sbjct: 390 EEKIIRLRFGIGEKAEYTLEEIGKRFNVSRERIRQIEKKALNRLRHSSRRDKLKFFVD 447 Score = 43.1 bits (100), Expect = 0.027, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 64/134 (47%), Gaps = 5/134 (3%) Query: 6 QSQLK-LLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADD 64 Q++LK L+ GK++G +++ +N +P+D+ D IE I + GI+++ + Sbjct: 7 QTELKEKLLETGKKEGCISFDALNKLIPDDVKDPTAIEKIFNFLGAHGIEIVTIEKSGEK 66 Query: 65 LMLAENTADEDAAEAAAQV----LSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA 120 L+ ++ + ++ S + E + + Y+REMG +LLT E E + Sbjct: 67 RTLSGEIWEKSEVDLELEIEDGAALSGDEESHESEETTTTYLREMGRFDLLTPEEEAKYS 126 Query: 121 KRIEDGINQVQCSV 134 K I G + ++ Sbjct: 127 KTIRQGFEAIIFAI 140 >UniRef50_P27785 RNA polymerase sigma factor rpoD n=102 Tax=Bacteria RepID=RPOD_STRAU Length = 317 Score = 269 bits (688), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 132/257 (51%), Positives = 191/257 (74%), Gaps = 12/257 (4%) Query: 360 DINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF 419 D++R + +G R AK+ ++E+NLRLV+S+AK+Y RGL LDL+QEGN+GL++AV+KF Sbjct: 69 DLDRLVVMG----RMAKRRLIESNLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKF 124 Query: 420 EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPT 479 +Y RGYKFSTYATWWIRQA++R++ADQARTIR+PVH++E IN++ R+ R+MLQE G EPT Sbjct: 125 DYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPT 184 Query: 480 PEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSAT--- 536 EE+A + + +++ +VL++A+EP+S+ P+G+++D LGD IED P++SA Sbjct: 185 AEEVAVHLELTPERVLEVLRLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFFL 244 Query: 537 -TESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKAL 595 E L A VL+ L RE KV+++R+G+ TLEE+G+ F VTRERIRQIE+K L Sbjct: 245 RCEHLEA----VLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTL 300 Query: 596 RKLRHPSRSEVLRSFLD 612 KLR + ++ LR +LD Sbjct: 301 NKLRDHAFADQLRGYLD 317 >UniRef50_B0M9H5 RNA polymerase sigma factor n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0M9H5_9FIRM Length = 347 Score = 268 bits (686), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 126/246 (51%), Positives = 185/246 (75%), Gaps = 1/246 (0%) Query: 369 EAKARRAKKEMVEANLRLVISIAKKYT-NRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKF 427 EA ++ AK +M+ +NLRLV+S+AK+Y G+ LDLIQEGNIGLMKAVDKF+YRRGYKF Sbjct: 102 EAGSQSAKDKMINSNLRLVVSVAKRYAAGSGMALLDLIQEGNIGLMKAVDKFDYRRGYKF 161 Query: 428 STYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERM 487 STYA WWIRQ++TR+IADQARTIRIPVHM E + K++ +R+ L+E GREP +ELAE M Sbjct: 162 STYAMWWIRQSVTRAIADQARTIRIPVHMKEKMGKVSGAARKFLEENGREPNADELAELM 221 Query: 488 LMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDV 547 + D++ +++++ + +S+++P+G++ED+ L +F+ D ++ +A L +++ Sbjct: 222 EISRDQMDEIMRLYSDTVSLDSPVGEEEDAMLMNFVADESMPEQYQTAEQGILSEQINEI 281 Query: 548 LAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVL 607 L+ LT RE +LR+RFG N +TLEEVG+++ VTRERIRQIE KALRKL+ ++ L Sbjct: 282 LSELTEREQTILRLRFGFVENRIWTLEEVGREYHVTRERIRQIEGKALRKLKMKKETKSL 341 Query: 608 RSFLDD 613 R++++D Sbjct: 342 RAYIED 347 >UniRef50_B1VAH4 RNA polymerase sigma factor n=5 Tax=Acholeplasmataceae RepID=B1VAH4_PHYAS Length = 476 Score = 266 bits (681), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 137/284 (48%), Positives = 199/284 (70%), Gaps = 9/284 (3%) Query: 333 VSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAK 392 + +E + L K + +E L+ ++VK + ++ +A +AK +VE+N RLV+SIAK Sbjct: 199 LGKEAKKKLTKFRN--QEIDLSDQEVKQLESQI----IQANQAKDVLVESNYRLVVSIAK 252 Query: 393 KYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRI 452 +Y RG+ FLDLIQEGN+GLM+AVDKF+Y++G + STYAT+W+ Q +TR+IADQARTIRI Sbjct: 253 RYIGRGVLFLDLIQEGNMGLMRAVDKFDYQKGLRLSTYATYWVIQGVTRAIADQARTIRI 312 Query: 453 PVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIG 512 PVH++ETINK++ +R++ QE+ ++PT EELAE+M +P DK+R + I K+PIS+E P Sbjct: 313 PVHIVETINKMSLCTRKLTQELKKKPTIEELAEKMNIPADKLRSIQYIEKKPISLEVPPA 372 Query: 513 DD--EDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAG-LTAREAKVLRMRFGIDMNT 569 ++ +++ LGDFI D + P + E + +VL LT RE KVL+MR+G Sbjct: 373 ENKEDETSLGDFISDPNVLSPHEYMMKEVTQKLLDEVLENTLTEREEKVLKMRYGFLDGK 432 Query: 570 DYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 YTLEE+G F VTRERIRQIE+KALR+LR P++ L+S + Sbjct: 433 VYTLEEIGNLFGVTRERIRQIESKALRRLRTPAKQSKLKSLYQN 476 >UniRef50_Q2SRY7 RNA polymerase sigma factor n=5 Tax=Mollicutes RepID=Q2SRY7_MYCCT Length = 505 Score = 266 bits (679), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 135/287 (47%), Positives = 180/287 (62%), Gaps = 56/287 (19%) Query: 372 ARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYA 431 + + +++E+NL+LVIS+A+K+ NRGL F DLI+EGNIGLMKAVDKFEY +G+KFSTYA Sbjct: 204 VKEGRNKLIESNLKLVISVARKHLNRGLDFADLIEEGNIGLMKAVDKFEYEKGFKFSTYA 263 Query: 432 TWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERM--LM 489 TWWI QAITR+IADQARTIRIPVHM+ETINKL R+ RQ+ QE+GREP EE+A R+ + Sbjct: 264 TWWISQAITRAIADQARTIRIPVHMVETINKLARVERQLTQELGREPNAEEIANRVGEGI 323 Query: 490 PEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLA 549 DK+ ++ K++ EP+S+E P GD++D+H GDF+ED + P + E L+ V Sbjct: 324 TSDKVIEIKKLSIEPVSLEKPFGDEDDTHFGDFVEDKDMVSPSEYTEKEILKEVMDKVFE 383 Query: 550 GLTAREAKVLRMRFGI------------------------------DMNTDYTLE----- 574 + RE KV+RMR+GI D++ D +E Sbjct: 384 DMPPREEKVIRMRYGIVPTRLRTLLRLAQECNDTNAKELKQAIEELDIHLDTPIEKVRKF 443 Query: 575 -------------------EVGKQFDVTRERIRQIEAKALRKLRHPS 602 EVGK+ +VTRERIRQIEAK +RKL+ PS Sbjct: 444 NNEIINNNLAKYDSARTLEEVGKELNVTRERIRQIEAKTIRKLKQPS 490 >UniRef50_B8GCU9 RNA polymerase sigma factor n=5 Tax=Bacteria RepID=B8GCU9_CHLAD Length = 398 Score = 263 bits (673), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 123/238 (51%), Positives = 177/238 (74%) Query: 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 434 A+++M ANLRLV+SIAK+Y +RGL LDLIQEG++GL++A++KF++ +GYKFSTYATWW Sbjct: 159 ARQKMAAANLRLVVSIAKRYRDRGLPLLDLIQEGSLGLLRAIEKFDHTKGYKFSTYATWW 218 Query: 435 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKI 494 I+QA++R++ADQ+R +R+PVH+ ET+N++ RQ+ Q +GREPT ELA + M E+K+ Sbjct: 219 IKQALSRALADQSRLVRLPVHLGETLNRIQSARRQLTQSLGREPTDTELANHLGMSEEKL 278 Query: 495 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAR 554 R++ + A++P+S+ TP+G++ DS L DFI D D+A + LR L L+ R Sbjct: 279 RELRRTAQDPVSLATPVGEEADSTLADFIPDPHALDADDAAASGMLRQQIAAALDQLSER 338 Query: 555 EAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 E +VL +R+G+ TLEEVGK F VTRER+RQIE KALRKLRHP ++L+ +LD Sbjct: 339 ERRVLELRYGLADGQPRTLEEVGKAFGVTRERVRQIEVKALRKLRHPRLGKLLKDYLD 396 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 8/118 (6%) Query: 9 LKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLA 68 ++ L+ +G++QG++T+ ++ +P +QI+ I + + G+ V D D+ + Sbjct: 20 VQALIAQGRQQGFVTFEDIQRLVPNLEESVEQIDSIYAALAEAGVPVH----DGDEPV-- 73 Query: 69 ENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDG 126 + DE + + E +D VR+Y+RE+G V LLT E E +A+ IE G Sbjct: 74 --SGDESLTPSVTDLDLDDELSDALLSDSVRLYLREIGQVPLLTAEQEKQLAQMIERG 129 >UniRef50_D2AWC8 RNA polymerase sigma factor n=3 Tax=Streptosporangineae RepID=D2AWC8_STRRD Length = 452 Score = 262 bits (670), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 131/281 (46%), Positives = 189/281 (67%), Gaps = 7/281 (2%) Query: 332 DVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIA 391 ++++ + L ++E E GL+ D+ G RRAK M+EANLRLV+S+A Sbjct: 176 ELAKRIEAGLYAESKLEAEPGLSAAARDDLEWVAEDG----RRAKDHMLEANLRLVVSVA 231 Query: 392 KKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIR 451 KKYT+RG+ LD++QEGN+GL++AV+KF+Y +GYKFSTYA WWIRQAI R AD ARTIR Sbjct: 232 KKYTDRGMALLDVVQEGNLGLIRAVEKFDYTKGYKFSTYAMWWIRQAIQRGFADSARTIR 291 Query: 452 IPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPI 511 +PVH++E ++KL+R+ R M Q +GREPTPEELA + D+I ++L+ +++PIS+ I Sbjct: 292 LPVHVLEMLSKLSRVERDMHQRLGREPTPEELAVELDKTPDQIEELLRTSRQPISLNATI 351 Query: 512 GDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDY 571 G+D ++ +GD IED + + L VL L+ REAK++ +RFG+ + Sbjct: 352 GEDGETTIGDLIEDVDSPEASEVVDRQLLGEQLRGVLGNLSPREAKIMALRFGLVDGKPH 411 Query: 572 TLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 TL+E+GK +TRERIRQ+E ++L KLRHPS + R LD Sbjct: 412 TLDEIGKHLGLTRERIRQLEKESLSKLRHPSNT---RPLLD 449 >UniRef50_A9BJC9 RNA polymerase sigma factor n=3 Tax=Thermotogaceae RepID=A9BJC9_PETMO Length = 424 Score = 261 bits (666), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 133/272 (48%), Positives = 191/272 (70%), Gaps = 8/272 (2%) Query: 344 LQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLD 403 L++I + LT + + + RR +G+ +RA++E+++ANLRLVISIAK+Y GL FLD Sbjct: 154 LKEISKSKLLTPSRERKLARRAQMGD---KRAREELIKANLRLVISIAKRYVGHGLGFLD 210 Query: 404 LIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKL 463 LIQEGNIGLMKAV KF++++GYKFSTY+ WWIRQAITR+IADQ RT+RIPVH++ETIN++ Sbjct: 211 LIQEGNIGLMKAVAKFDWKKGYKFSTYSYWWIRQAITRAIADQGRTVRIPVHLVETINRM 270 Query: 464 NRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDED----SHL 519 NR+ + +QE G P EEL+ M P DK+++VL AK S+ PI +D D S + Sbjct: 271 NRVVNKYIQENGEVPDLEELSVLMDKPVDKMKEVLISAKNIFSLNAPISNDVDAEGESEV 330 Query: 520 GDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQ 579 DFI D+ P + +R ++ L+ +EA +L+MR+G TLEEVG+ Sbjct: 331 LDFI-DSDSPTPDEEGRKMIIRQKMEMIIDTLSPKEAMILKMRYGFVDGKQKTLEEVGEF 389 Query: 580 FDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 F+VTRERIRQIE+K++RKL+HP+R +++ + + Sbjct: 390 FNVTRERIRQIESKSIRKLKHPARKKMIENII 421 >UniRef50_A1S281 RNA polymerase sigma factor n=7 Tax=Bacteria RepID=A1S281_SHEAM Length = 969 Score = 261 bits (666), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 177/521 (33%), Positives = 278/521 (53%), Gaps = 43/521 (8%) Query: 96 DPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYP---EAITYLLEQYDRVE 152 +P+ Y + ELLTRE E+D R E + +++E P E + +L ++ R Sbjct: 480 EPMGYYFASLPGKELLTREQEVDNGMRREAARLAIMEALSEVPFICELLAHLCQEALREH 539 Query: 153 AEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSI 212 E L ++ AE + P+ V + + D++ EDGD+ D+ + Sbjct: 540 NPEQSLQKVV-------AELNTLPSEDFVEIKRAVSLFMDEQ----EDGDEP----DDFV 584 Query: 213 DPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNS 272 D L+ V+ ++ H Q+ F+ L + L+ + Sbjct: 585 DTYPYEAIVGALKTFLNVSGES------EHPGVQD-------TFRSIVLTEDALNILIKA 631 Query: 273 MRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSE-KLH 331 + +D+V + ++ L + K+P+K ++ + + + P E KL Sbjct: 632 LYESIDKVSDIKTELVNLYTREIKLPRKTAESV--AEQKMGRELISQLKTEYPLCEDKLE 689 Query: 332 DVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIA 391 + ++R ++Q I ++TG+ + ++DI ++ + A+ EM+ NLRLV+S+A Sbjct: 690 RHAGAINRLQAQMQNINQKTGIDLYSLQDIGSKIKKLQRDISAARDEMITFNLRLVLSVA 749 Query: 392 KKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIR 451 KY RGL+ DL+QEGNIGLMKAV+KF++R+G+KFSTYATWWIRQAITR+IADQAR IR Sbjct: 750 NKYLGRGLELADLVQEGNIGLMKAVEKFDHRKGFKFSTYATWWIRQAITRAIADQARIIR 809 Query: 452 IPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKI-AKEPISMETP 510 IPVH+ E++NKL S+ + + GR P EL+ + MPE K+ + +I EP++ Sbjct: 810 IPVHVNESLNKLISASKVLTHKFGRGPKISELSLILSMPETKVENLKQILVMEPVA---- 865 Query: 511 IGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTD 570 + D + +++ + P + + D+L GLT +E KVL +RFGI+ T+ Sbjct: 866 ---EADHNTNGYVDWAAMS-PEEEIIDDDRDTNIKDLLKGLTDKEKKVLELRFGINAATE 921 Query: 571 YTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 TLEEVG+QFDVTRERIRQIEAK+L+KL H SRS L F Sbjct: 922 LTLEEVGQQFDVTRERIRQIEAKSLKKLAHTSRSSHLAIFF 962 >UniRef50_UPI0001C317B8 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C317B8 Length = 367 Score = 259 bits (663), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 125/256 (48%), Positives = 186/256 (72%), Gaps = 3/256 (1%) Query: 353 LTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL 412 LT ++ D+ +R+ G+ A K++MVE+NLRLV+SIAK Y N+GL FLDLIQEG +GL Sbjct: 112 LTAQEEVDLAKRIERGDLDA---KQKMVESNLRLVVSIAKNYRNQGLPFLDLIQEGTLGL 168 Query: 413 MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQ 472 ++A +KF+YR+G+KFSTYATWWIRQAI R++AD+ARTIRIPVH++E +NK+ R R+++ Sbjct: 169 VRAAEKFDYRKGFKFSTYATWWIRQAIARALADKARTIRIPVHVVEKLNKIGRAERKLVT 228 Query: 473 EMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPL 532 E+GREPT EE+A+ + +++ + + A+ P+S+E P+GD+E+S G FI D E P Sbjct: 229 ELGREPTAEEIADVTGIDPEEVDSIKRSAQAPVSLEKPVGDEEESEFGQFIADERAESPY 288 Query: 533 DSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEA 592 + A + A + L L+ RE +VL +R+G+ TL+EVG+ F+VTRERIRQIE Sbjct: 289 ERAAEILTKEALREALENLSYRERRVLELRYGLGGEHPRTLDEVGRTFNVTRERIRQIEN 348 Query: 593 KALRKLRHPSRSEVLR 608 ++L+KL+ + ++ LR Sbjct: 349 QSLKKLQSLAEAQKLR 364 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 66/120 (55%), Gaps = 4/120 (3%) Query: 8 QLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLML 67 ++K LV RG + G LTYAE+ + E +D +ED+ + I+++EE D Sbjct: 11 EIKGLVNRGTQLGVLTYAEIARAVSELDLDESDVEDLHGFLERAEIELVEEI---DPATT 67 Query: 68 AENTADEDAAEAAAQVLSS-VESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDG 126 A N + + + ++ + TTD ++++++++G V LLT + E+D+AKRIE G Sbjct: 68 ASNQVERAPDRRRGRRARTALDLKPDMTTDSLQLFLKDIGKVRLLTAQEEVDLAKRIERG 127 >UniRef50_C5B6H5 RNA polymerase sigma factor n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B6H5_METEA Length = 531 Score = 259 bits (662), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 118/262 (45%), Positives = 179/262 (68%) Query: 352 GLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIG 411 G ++ + + + R + R+A+ +V +NLRLV S+AKKYTNR L LDL+QEGNIG Sbjct: 268 GGSVRRFRLVQREVRAAHGDLRKARDTLVTSNLRLVFSVAKKYTNRPLPILDLVQEGNIG 327 Query: 412 LMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQML 471 LM+A++KF+YRRG+KFSTYA WWI+Q+I+RSIAD RTIR+PVH+ E K++R + ++ Sbjct: 328 LMRAIEKFDYRRGWKFSTYAIWWIKQSISRSIADHGRTIRLPVHLHEKAAKIDRTAARLR 387 Query: 472 QEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELP 531 E+GR P+P ELA+ + + ++ +++ +++E +S++ P+G+D D GD +ED P Sbjct: 388 AELGRPPSPPELAQALDIDVRQVERLMNMSRETVSLDLPVGEDGDVRFGDLVEDEKAPDP 447 Query: 532 LDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIE 591 + A L+ A D + L RE ++RMRFGI TLEE+G+ F ++RER+RQ+E Sbjct: 448 VGLADLAKLKDAVSDAVGDLPEREQTIIRMRFGIGYADQMTLEEIGQHFRISRERVRQVE 507 Query: 592 AKALRKLRHPSRSEVLRSFLDD 613 +KA+++LR P LR FLDD Sbjct: 508 SKAIQRLRSPEIGAYLRKFLDD 529 >UniRef50_Q2JLG8 RNA polymerase sigma factor n=3 Tax=Cyanobacteria RepID=Q2JLG8_SYNJB Length = 320 Score = 258 bits (659), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 124/262 (47%), Positives = 179/262 (68%), Gaps = 3/262 (1%) Query: 353 LTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL 412 L EQ + R ++ G A RAK+E+V ANLRLV+SIAKKY NRG+ FLDLIQEG IGL Sbjct: 56 LNAEQEVKLGRLIAEGGAAGERAKRELVRANLRLVVSIAKKYLNRGVPFLDLIQEGTIGL 115 Query: 413 MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQ 472 ++A +KFEY RGYKFSTYA WWIRQ ITR++A+Q R +RIPVHM+E +N++ RI R++ + Sbjct: 116 IRAAEKFEYERGYKFSTYAYWWIRQGITRAVANQGRLVRIPVHMVEKLNQVKRIRRELTE 175 Query: 473 EMGREPTPEELAERMLMPEDKIRKVLKI---AKEPISMETPIGDDEDSHLGDFIEDTTLE 529 + R PT E+AE + + DK+ +L + ++ +S+ TP+G +ED L IED Sbjct: 176 TLNRRPTQAEIAEALEISPDKLDALLTLLEAGRQTLSLHTPVGKEEDRELMQLIEDANSL 235 Query: 530 LPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQ 589 P L A ++L L+ RE ++L++R+G+ +TL E+G+ F ++RER+RQ Sbjct: 236 TPESQMDLHLLSAQLEEMLEQLSPREQEILKLRYGLKDGHLHTLSEIGQLFGLSRERVRQ 295 Query: 590 IEAKALRKLRHPSRSEVLRSFL 611 I+A+A+RKLRHP R E+L ++ Sbjct: 296 IQARAMRKLRHPRRQEILADWM 317 >UniRef50_D1CD77 RNA polymerase sigma factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CD77_THET1 Length = 596 Score = 257 bits (656), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 128/236 (54%), Positives = 172/236 (72%), Gaps = 1/236 (0%) Query: 360 DINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF 419 DI +++ A+ A+K ++EANLRLV+SIAKKYT RG+ LDLIQEGNIGL+KAV+KF Sbjct: 240 DIQDKITKWIAEGDIARKRLIEANLRLVVSIAKKYTGRGITLLDLIQEGNIGLIKAVEKF 299 Query: 420 EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPT 479 +++GYKFSTYATWWIRQAITR+IADQARTIRIPVHM E INK+ + R++ QE+GREPT Sbjct: 300 RHQKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMGEAINKIAQARRRLTQELGREPT 359 Query: 480 PEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTES 539 +E+A + +P +KIR+V KI++EPIS+E P+G++ED+ LGDFI+D P+D+A+ Sbjct: 360 EQEIANYLGIPVEKIREVQKISQEPISLENPVGEEEDTSLGDFIQDHKAPAPMDAASQSL 419 Query: 540 LRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKAL 595 LR VL L+ RE VL MRFG+D EV V+ ++ Q E++ L Sbjct: 420 LRDQIDQVLKHLSERERGVLLMRFGLDCEP-RPYREVAHILAVSPNQVMQAESRVL 474 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/76 (51%), Positives = 50/76 (65%), Gaps = 4/76 (5%) Query: 538 ESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRK 597 + LR A V+ + A E ++R RFG+D+ TLEEVG+ F VTRERIRQIE+KALRK Sbjct: 522 QKLREALASVMLHVPAPERDMMRFRFGLDIGQPRTLEEVGRAFGVTRERIRQIESKALRK 581 Query: 598 LRHPSRSEVLRSFLDD 613 LR +V R L+D Sbjct: 582 LRR----DVFRRQLED 593 >UniRef50_B5Y8E5 RNA polymerase sigma factor n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y8E5_COPPD Length = 360 Score = 256 bits (654), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 138/292 (47%), Positives = 200/292 (68%), Gaps = 5/292 (1%) Query: 323 NKPWSEKLHDVSEEVHRALQ-KLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVE 381 N + + L + E+V +Q L + + LT EQ + + +R+ +A AR +E+++ Sbjct: 70 NVSYEQGLPEEEEQVRELMQVYLHDVGQYDLLTAEQERILAQRIEKNDAAAR---EELIK 126 Query: 382 ANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITR 441 NLRLVISIAKKYTN+GL F++LIQEGNIGL+KAV+KF++R+GYKFSTYATWWI+QAITR Sbjct: 127 RNLRLVISIAKKYTNKGLSFMELIQEGNIGLIKAVEKFDWRKGYKFSTYATWWIKQAITR 186 Query: 442 SIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIA 501 ++ADQ+R IR PVHM+E ++ + ++ ++GREPT +ELAE + EDK+ + +++ Sbjct: 187 ALADQSRLIRRPVHMVEAYHQFQKKLNELYNQLGREPTVQELAEALGFSEDKVLALKQMS 246 Query: 502 K-EPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLR 560 EP S++ IGD +DS + DF+ DT E R +VL+ L RE +++ Sbjct: 247 NPEPQSLDATIGDQDDSRVQDFVPDTGEGAADKYFWEEERRRVLEEVLSTLNKREREIIE 306 Query: 561 MRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 MR+G+ ++TLEEVG F++TRER+RQIE KALRKLRHP+R LR +LD Sbjct: 307 MRYGLVDGVEHTLEEVGASFNITRERVRQIETKALRKLRHPTRIRKLREYLD 358 >UniRef50_A9AU99 RNA polymerase sigma factor n=2 Tax=Chloroflexi (class) RepID=A9AU99_HERA2 Length = 391 Score = 255 bits (652), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 123/268 (45%), Positives = 188/268 (70%), Gaps = 4/268 (1%) Query: 345 QQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDL 404 Q++ E T ++ + RR+ G ++++ +ANLRLV+S+AKKY + F+DL Sbjct: 128 HQLQTEQYATWDERTALERRVDFGN----EGRRKLTQANLRLVVSVAKKYIGNHMSFMDL 183 Query: 405 IQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLN 464 IQEGNIGLM+AV+KF+YR+G +FSTYATWWIRQA+TR+IA+Q+RTIR+PVH+ E+I ++ Sbjct: 184 IQEGNIGLMRAVEKFDYRKGNRFSTYATWWIRQAVTRAIAEQSRTIRLPVHLSESIAQMR 243 Query: 465 RISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIE 524 R++ Q+ Q + RE TP+ELA+ + + K++++L + +P+S+E PIG + +G+F+ Sbjct: 244 RVAYQLEQALQREATPDELADALGVSLRKVKRMLNASVQPVSLEQPIGKEGQGRVGEFLA 303 Query: 525 DTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTR 584 D T E PL+ AT L+ D L+ L RE ++L +R+G+ TLEEVG +F +TR Sbjct: 304 DDTDEAPLEQATRMMLQDELADALSQLPDRERQILLLRYGLADGKRRTLEEVGAEFGITR 363 Query: 585 ERIRQIEAKALRKLRHPSRSEVLRSFLD 612 ER RQIEA+A+R LR P+ + LR++LD Sbjct: 364 ERTRQIEAEAMRHLRQPNVGQHLRAYLD 391 Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 2/71 (2%) Query: 56 MEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREG 115 +E+AP+ +L N D + A + ++ SE D V+MY+RE+G VELLT E Sbjct: 55 LEDAPEGWELEPGFNDEDVELAIVNLRRKKTLYSEA--VEDSVQMYLREIGEVELLTAEE 112 Query: 116 EIDIAKRIEDG 126 EI +AK+IE G Sbjct: 113 EITLAKQIETG 123 >UniRef50_C1E4E8 Predicted protein n=2 Tax=Micromonas RepID=C1E4E8_9CHLO Length = 595 Score = 254 bits (649), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 125/246 (50%), Positives = 176/246 (71%), Gaps = 5/246 (2%) Query: 372 ARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYA 431 +RAK M++ANLRLV+SIAK+Y N+ + F DLIQEG +GL++ +KF+++RGYKFSTYA Sbjct: 342 GKRAKNAMIQANLRLVVSIAKRYANKSMSFQDLIQEGCVGLIRGAEKFDFKRGYKFSTYA 401 Query: 432 TWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPE 491 WWIRQA+TRSI+DQ+RTIR+PVH+ E I++++++ RQM+ ++GR+PT EELA+ M M Sbjct: 402 HWWIRQAVTRSISDQSRTIRLPVHLFEIISRMSKVERQMVLKLGRDPTHEELADAMEMTV 461 Query: 492 DKIRKVLKIAKEPISMETPI----GDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDV 547 +KI+++ K + PIS+ + G+D+ + I+D T E P L+ +V Sbjct: 462 EKIKQIKKASLVPISLSQTVNNSNGEDKRTVEDTLIDDYT-EHPEGETGKVLLKEDLENV 520 Query: 548 LAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVL 607 L L RE VLR+R+G+D TLEE+G F VTRERIRQIEAKALRKLR PSR+ +L Sbjct: 521 LNTLNPRERDVLRLRYGLDDGRVKTLEEIGNVFSVTRERIRQIEAKALRKLRQPSRNGIL 580 Query: 608 RSFLDD 613 R +L + Sbjct: 581 REYLPN 586 >UniRef50_C7M2H3 RNA polymerase sigma factor n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M2H3_ACIFD Length = 337 Score = 254 bits (649), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 128/268 (47%), Positives = 179/268 (66%), Gaps = 13/268 (4%) Query: 348 EEETGLTIEQVKDINRRMSIG-EAKARRA------------KKEMVEANLRLVISIAKKY 394 E E G +++ +D R++ G + ARRA K+ ++ANLRLV+SIAK+Y Sbjct: 59 EAELGRRMDRARDAQRQLDAGVKEPARRAELEELVRQGEEAKRAFIQANLRLVVSIAKRY 118 Query: 395 TNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPV 454 GL LDLIQEGN+GL+ AV+KF++R+G+KFSTYATWWIRQAITR IA+ RTIR+PV Sbjct: 119 QASGLPLLDLIQEGNMGLIHAVEKFDWRKGFKFSTYATWWIRQAITRGIANTGRTIRLPV 178 Query: 455 HMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDD 514 H ++++++ R Q+ +GR PT ELA + +P DK+ + L+ EP+S+ P+ DD Sbjct: 179 HAGDSLSRVQRAQVQLEVRLGRAPTVRELAAEVDLPYDKLVEALRFRAEPVSLSEPLRDD 238 Query: 515 EDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLE 574 D+ LGD +ED+ P D A L + +LA L RE ++LR+R+G+D TLE Sbjct: 239 GDAELGDVVEDSQSATPFDVAAEHLLPSEVSRLLAPLDGREREILRLRYGLDRGEPRTLE 298 Query: 575 EVGKQFDVTRERIRQIEAKALRKLRHPS 602 EVG+ F +TRERIRQIEA+A+ KLRHPS Sbjct: 299 EVGEYFHLTRERIRQIEARAMSKLRHPS 326 >UniRef50_B5YKU3 RNA polymerase sigma factor n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKU3_THEYD Length = 427 Score = 254 bits (649), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 132/279 (47%), Positives = 192/279 (68%), Gaps = 5/279 (1%) Query: 335 EEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEA--KARRAKKEMVEANLRLVISIAK 392 ++ R + K + ++ TG+T E+ D M+I + + AK +M+E+NL+LV+SIAK Sbjct: 149 DKFRREIIKGENLQPITGMTNEEFLD--HFMTIKKIFNEFTEAKNKMIESNLKLVVSIAK 206 Query: 393 KYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRI 452 KYT RGL DLIQEGNIGLMKAV+KFEY++G+KFSTY+TWWIRQ+I R+IA+ ++TIRI Sbjct: 207 KYTGRGLNLEDLIQEGNIGLMKAVEKFEYKKGFKFSTYSTWWIRQSINRAIAEHSKTIRI 266 Query: 453 PVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIG 512 PVH+I+ I K+N+I R++ Q EP EE++ + +P DKI L I+KEP+S++ + Sbjct: 267 PVHVIDNICKINKIYRELYQNSENEPDIEEISLNLNIPSDKIADFLAISKEPVSIDMSLR 326 Query: 513 DDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYT 572 DD DS L +FIED P + A + L+ V + L+ RE ++L R+GI+ + Sbjct: 327 DD-DSLLKEFIEDMNSPNPYEEALHDDLKHLIEKVFSLLSKREKEILMRRYGINEEKPKS 385 Query: 573 LEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 L+EVGK+F V+RERIRQIE +A+RKL+ R + LR F+ Sbjct: 386 LDEVGKEFSVSRERIRQIELRAMRKLKRLCRLKWLREFI 424 >UniRef50_B9L1K5 RNA polymerase sigma factor n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L1K5_THERP Length = 340 Score = 253 bits (647), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 126/260 (48%), Positives = 184/260 (70%), Gaps = 3/260 (1%) Query: 344 LQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLD 403 L+ I E LT E+ ++ +R+ G+ +A + V +NLRLV+SIAK+Y RGL LD Sbjct: 74 LRDIAEAPLLTPEEEVELAKRIKEGDTEA---LQRFVRSNLRLVVSIAKRYVGRGLSLLD 130 Query: 404 LIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKL 463 LIQEGNIGLM+AV+KF++RRGY+FSTYATWWIRQAITR+IADQ RTIR+PVHM ++I + Sbjct: 131 LIQEGNIGLMRAVEKFDWRRGYRFSTYATWWIRQAITRAIADQGRTIRLPVHMTDSITRY 190 Query: 464 NRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFI 523 +R + Q+ QE+GR+PTPEE+AE M + +KI ++++ A+ +S++ P+ +++++ LGD I Sbjct: 191 HRTTTQLAQELGRQPTPEEIAEAMSVQPEKIAQIVRAAQRAVSLDQPLSEEDETSLGDLI 250 Query: 524 EDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVT 583 D + P + A +R ++L LT RE VL++R+G+ TL EVG ++ Sbjct: 251 ADELAQSPEELAEESLMRRDIAEILEMLTPRERLVLQLRYGLSDGEPRTLAEVGDLLGIS 310 Query: 584 RERIRQIEAKALRKLRHPSR 603 RER+RQIE +ALRKLR +R Sbjct: 311 RERVRQIENEALRKLRRIAR 330 >UniRef50_B1AIY8 RNA polymerase sigma factor n=15 Tax=Ureaplasma RepID=B1AIY8_UREP2 Length = 448 Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 124/251 (49%), Positives = 173/251 (68%), Gaps = 14/251 (5%) Query: 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 434 K ++ +N+RLV SIAKKY NRGL DLIQEG+ GL+KA+DKF++ +G+KFSTYATWW Sbjct: 193 GKNQLYTSNMRLVTSIAKKYLNRGLDLEDLIQEGSSGLLKAIDKFDHEKGHKFSTYATWW 252 Query: 435 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERM------- 487 IRQ+ITR+IADQAR IRIPVHM+ETINKL + R ++QE+GR+PT EE+A+ M Sbjct: 253 IRQSITRAIADQARQIRIPVHMVETINKLTKAERNLIQELGRDPTAEEIAQAMNKVSQAK 312 Query: 488 -----LMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRA 542 L+ K+ ++ K+ +P+S++ IG DE+S DFI D + P ++L Sbjct: 313 NQKEQLITAQKVVEIKKLNVDPVSLDKQIGHDEESQFSDFISDDEIISPEKYTEKKALND 372 Query: 543 ATHDVLAG-LTAREAKVLRMRFG-IDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 600 +++ L E +V++MR+G + YTLEEVG+ VTRER RQIE+KA+RKL+H Sbjct: 373 QINEMFEKVLNDNEQRVIKMRYGLLPFERPYTLEEVGEYLGVTRERARQIESKAIRKLKH 432 Query: 601 PSRSEVLRSFL 611 PS++ LRSF+ Sbjct: 433 PSKTAKLRSFI 443 >UniRef50_Q601Y8 RNA polymerase sigma factor n=8 Tax=Bacteria RepID=Q601Y8_MYCH2 Length = 676 Score = 248 bits (634), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 126/268 (47%), Positives = 182/268 (67%), Gaps = 11/268 (4%) Query: 353 LTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL 412 LT E+ +++ ++M I ++A+ +++ NLRLV++ AK+Y NRGL F+DLI EGN+G+ Sbjct: 409 LTAEEERELAKKMKIKGRIGKKARDTLIKRNLRLVVNSAKRYKNRGLGFIDLISEGNLGI 468 Query: 413 MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQ 472 +KAV K++Y RG+KFSTYATWWIRQAITR++ADQAR IRIPVHM+ETINK+N++ R++ Q Sbjct: 469 IKAVAKYDYTRGFKFSTYATWWIRQAITRAVADQARLIRIPVHMVETINKINKVERELQQ 528 Query: 473 EMGREPTPEELAERM---LMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLE 529 E G PT EE++ER+ P DKIR + KI +PIS++ IG +EDS DFI+D + Sbjct: 529 EKGLNPTAEEISERLGGEFSP-DKIRYIKKINIDPISLDKAIGKEEDSSFSDFIKDENMI 587 Query: 530 LPLDSATTESLRAATHDVL-AGLTAREAKVLRMRFGIDMNTD------YTLEEVGKQFDV 582 P+D A E +++ + L E ++ R+G+ N + ++ EE+ V Sbjct: 588 SPVDYAIREEKAKVLLEMIDSTLDYDERDFIKRRYGVGTNDEGIPYQAHSFEELAAMRRV 647 Query: 583 TRERIRQIEAKALRKLRHPSRSEVLRSF 610 T+ER+RQIEAK L+KLR P R LR F Sbjct: 648 TKERVRQIEAKILKKLRTPHRRLSLRDF 675 >UniRef50_D1CF84 RNA polymerase sigma factor n=2 Tax=Bacteria RepID=D1CF84_THET1 Length = 363 Score = 248 bits (632), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 122/249 (48%), Positives = 181/249 (72%), Gaps = 5/249 (2%) Query: 353 LTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL 412 LT ++ ++ +R+ G+ +A + V ANLRLV+SIAK+Y RGL LDLIQEGNIGL Sbjct: 105 LTPKEEVELAKRIEKGDTEA---LQRFVLANLRLVVSIAKRYVGRGLPLLDLIQEGNIGL 161 Query: 413 MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQ 472 M+AV KF++R+G++FSTYATWWIRQAITR+I D++R IR+P H+ E +N++NRI +Q+ Q Sbjct: 162 MRAVQKFDWRKGHRFSTYATWWIRQAITRAIGDKSREIRLPAHINEELNRINRIRQQLSQ 221 Query: 473 EMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPL 532 + REPTPEE+AE+ +++R++L ++P+S++TP+G++ DS LG+F+ D P Sbjct: 222 TVNREPTPEEIAEKAGTSPERVRELLGYLQQPVSLDTPVGEEADSTLGEFVPDVRAN-PE 280 Query: 533 DSATTESLRAATHDVL-AGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIE 591 + AT E L+ VL LT RE +VL++R+G+ Y+LE+VG++ VTRER+RQ+E Sbjct: 281 EEATDEVLKTEMDRVLDEVLTPREKRVLQLRYGLGDGHTYSLEKVGRELGVTRERVRQLE 340 Query: 592 AKALRKLRH 600 +AL KLR Sbjct: 341 KQALEKLRR 349 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 69/120 (57%), Gaps = 14/120 (11%) Query: 9 LKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLA 68 +K L+T GK +G++T +V + +PE ED I N + ++ E + +L Sbjct: 13 IKRLITLGKSKGHVTERDVFELVPE-------AEDNIDCFNQVSDALIREGIE----VLP 61 Query: 69 ENTADEDAA--EAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDG 126 E T + +A E Q L +E++ G TD V++Y+RE+G+V LLT + E+++AKRIE G Sbjct: 62 EETTEAEAGPEEDLDQTLEELEND-GYLTDAVKIYLREIGSVPLLTPKEEVELAKRIEKG 120 >UniRef50_B8HRG7 RNA polymerase sigma factor n=9 Tax=Cyanobacteria RepID=B8HRG7_CYAP4 Length = 455 Score = 245 bits (626), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 119/239 (49%), Positives = 169/239 (70%), Gaps = 1/239 (0%) Query: 374 RAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW 433 RAK+ M++ANLRLV+S+AKKY NRGL+ LDLIQEG +GL +AV+KF+ +GY+FSTYA W Sbjct: 215 RAKEHMIQANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYW 274 Query: 434 WIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDK 493 WIRQ ITR+IA Q+RTIR+PVH+ E +NK+ + R++ QE G P+ E++A + M + Sbjct: 275 WIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKGHTPSIEDIATELEMTVPQ 334 Query: 494 IRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTA 553 +R++L +S+ET +G D+D+ LGD +E L P + ESL +LA LT+ Sbjct: 335 VRELLVRVPRSVSLETKVGKDKDTELGDLLETDDLS-PEEMMMRESLHRELEKLLADLTS 393 Query: 554 REAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 RE V+ MRFG+ Y+L ++G+ D++RER+RQIEAKAL+KLR P R +R +LD Sbjct: 394 RERDVISMRFGLGDGHAYSLADIGRALDLSRERVRQIEAKALQKLRQPKRRNRVRDYLD 452 >UniRef50_A5IY54 RNA polymerase sigma factor n=2 Tax=Mycoplasma RepID=A5IY54_MYCAP Length = 509 Score = 244 bits (624), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 128/280 (45%), Positives = 187/280 (66%), Gaps = 18/280 (6%) Query: 343 KLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL 402 KL Q EEE L E M G K +RA+ ++++ NLRLVI+ AKKY NRGL F+ Sbjct: 238 KLLQPEEEFELATE--------MDKGGFKGKRARDKLIKRNLRLVINNAKKYKNRGLSFI 289 Query: 403 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 462 DLI EGN G++KAV K+ +G+KFSTYATWWIRQAITR++ADQ+RT+R+PVHM+ETINK Sbjct: 290 DLISEGNSGIIKAVQKYNVNKGFKFSTYATWWIRQAITRAVADQSRTVRVPVHMVETINK 349 Query: 463 LNRISRQMLQEMGREPTPEELAERML--MPEDKIRKVLKIAKEPISMETPIGDDEDSHLG 520 + +I R++ QE G +PT EE+A+R +K+R + KI +PIS++ IG + DS Sbjct: 350 ITKIERELQQENGVDPTDEEIAQRYGNDFTAEKVRHIRKINIDPISLDKQIGKENDSSFS 409 Query: 521 DFIEDTTLELPLDSATTESLRAATHDVLAG-LTAREAKVLRMRFGIDMNTD------YTL 573 DF++D ++ P+D A+ E L + +L L A E +++ R+G+ + + ++L Sbjct: 410 DFVKDESVVNPVDYASHEELVETLNAILKDTLDADEYELICKRYGVGFDNNGEKYKVFSL 469 Query: 574 EEVGKQFDVTRERIRQIEAKALRKLR-HPSRSEVLRSFLD 612 EE+ + +V++ERIRQIE K LRKL+ P RS L+ F++ Sbjct: 470 EELALERNVSKERIRQIENKILRKLKSSPERSRYLKVFME 509 >UniRef50_Q2JRK5 RNA polymerase sigma factor n=3 Tax=Cyanobacteria RepID=Q2JRK5_SYNJA Length = 361 Score = 244 bits (624), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 120/249 (48%), Positives = 169/249 (67%), Gaps = 6/249 (2%) Query: 358 VKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD 417 V + R+ GE +A+++++ ANLRLV+S+AKKY NRG+ FLDLIQEGN+GL++A + Sbjct: 111 VSTLRSRIRQGE----QAQRKLINANLRLVVSVAKKYLNRGVPFLDLIQEGNMGLIRATE 166 Query: 418 KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE 477 KF RG++FSTYA WWIRQ ITR IA+QARTIR+PVHM++ + L R +R++++ GR Sbjct: 167 KFNAERGFRFSTYAHWWIRQGITRCIANQARTIRLPVHMVDKVRLLKRTNRELMKARGRR 226 Query: 478 PTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATT 537 PT ELAE + + K+R + + A P+S++ P+G + +S LGD + D E P + Sbjct: 227 PTEAELAEALGIKVKKLRMIQQAAALPLSLDVPVGQEGESRLGDLLPDERQEQPFEEILV 286 Query: 538 ESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRK 597 +SLR + L E +VL +R+G+D TL EVG F++TRERIRQIE ALRK Sbjct: 287 QSLRQDVRSAMQALKPIERQVLELRYGLDGQRARTLREVGDHFNLTRERIRQIERDALRK 346 Query: 598 LR--HPSRS 604 LR HPSR+ Sbjct: 347 LRLGHPSRA 355 >UniRef50_Q1Q6A4 RNA polymerase sigma factor n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q6A4_9BACT Length = 491 Score = 244 bits (624), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 119/238 (50%), Positives = 164/238 (68%) Query: 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 434 A+K E NLRLV+SIAKKY RG+ F DLIQEGN GLM+AVDK++YR G+KFSTYATWW Sbjct: 250 ARKRFSEGNLRLVVSIAKKYRKRGMAFHDLIQEGNTGLMRAVDKYDYRMGFKFSTYATWW 309 Query: 435 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKI 494 I+QAI R+ ++ RTIRIPVHM++ INK +++ + E +A P +I Sbjct: 310 IKQAIIRATEEKVRTIRIPVHMMDVINKSTYVAKAGQGSSAEKIQLEAIARDTNTPLPEI 369 Query: 495 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAR 554 ++L+I +PIS+ETPIG D ++ DFI+D ++ P+ A L+ VL L+ R Sbjct: 370 YRLLQITSQPISLETPIGSDGETMFEDFIQDKKIDAPIFLAQRSLLKEQIQKVLDTLSYR 429 Query: 555 EAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 E +++++RFGI ++LEE+GK+F++TRERIRQIEA ALRKL+HP RS L FL+ Sbjct: 430 EREIIKLRFGISDGYTHSLEEIGKRFNITRERIRQIEAIALRKLQHPVRSRKLEGFLE 487 >UniRef50_B0RI86 RNA polymerase sigma factor n=2 Tax=Clavibacter michiganensis RepID=B0RI86_CLAMS Length = 347 Score = 244 bits (622), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 118/231 (51%), Positives = 166/231 (71%), Gaps = 3/231 (1%) Query: 374 RAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW 433 RAK+ +V ANLRLV+SIAK+YT RGL FLDLIQEGN+GL++AV+KF+Y+ G+KFSTYA+W Sbjct: 109 RAKQHLVNANLRLVVSIAKRYTGRGLPFLDLIQEGNMGLVRAVEKFDYQAGFKFSTYASW 168 Query: 434 WIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDK 493 WI+Q+ITR +AD +RTIRIPVH +E IN++N + R++ E+GR+P+ EE+A P K Sbjct: 169 WIKQSITRGMADTSRTIRIPVHTVEHINRINAVQRELGDELGRDPSMEEIARESDTPVTK 228 Query: 494 IRKVLKIAKEPISMETPI---GDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAG 550 +R +L A+EP+S++ + G D D+ + D IED + P+D T + + A ++ G Sbjct: 229 VRYLLDRAQEPMSLQVLVGGSGGDGDTEMADLIEDADVTQPIDVVTQQLMAAHVTRLIDG 288 Query: 551 LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHP 601 L R+A+V+RMRFG+ +L V +Q VTRER+RQIE K L KLR P Sbjct: 289 LAERDAEVVRMRFGLAGLEPRSLAFVSQQLGVTRERVRQIEKKVLAKLRIP 339 >UniRef50_B3PMH4 RNA polymerase sigma-70 factor n=1 Tax=Mycoplasma arthritidis 158L3-1 RepID=B3PMH4_MYCA5 Length = 513 Score = 242 bits (617), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 113/249 (45%), Positives = 179/249 (71%), Gaps = 9/249 (3%) Query: 371 KARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY 430 + +RA+ +V+ NLRLVI+ AK+Y NRGL F+DLI EGN G+MKAV K++Y++G+KFSTY Sbjct: 256 RYKRARDMLVKRNLRLVINNAKRYKNRGLSFIDLISEGNSGIMKAVSKYDYKKGFKFSTY 315 Query: 431 ATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERML-- 488 ATWWIRQAITR++ADQARTIR+PVHM+ETINK+ +I R++ QE G PT EE+A++ Sbjct: 316 ATWWIRQAITRAVADQARTIRVPVHMVETINKILKIERELQQEFGYPPTDEEIAKKFGGD 375 Query: 489 MPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVL 548 +K+R + KI +PIS++ IG +E+S DF++D ++ P D A+ + L ++++ Sbjct: 376 FTAEKVRYIRKINIDPISLDKNIGKEENSSFSDFVKDESVISPNDFASQQELAVILNEMI 435 Query: 549 -AGLTAREAKVLRMRFGIDMNTD------YTLEEVGKQFDVTRERIRQIEAKALRKLRHP 601 + L + ++R R+G+ + +TL+E+ K+ ++++E++R++EAK LRKL+HP Sbjct: 436 NSSLDPEDQALIRKRYGVGQDPSGVPYRPHTLDELAKELNISKEKVRKLEAKILRKLKHP 495 Query: 602 SRSEVLRSF 610 + + L+ F Sbjct: 496 QKRKKLKEF 504 >UniRef50_Q6KI01 RNA polymerase sigma factor n=1 Tax=Mycoplasma mobile RepID=Q6KI01_MYCMO Length = 488 Score = 241 bits (616), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 113/249 (45%), Positives = 173/249 (69%), Gaps = 9/249 (3%) Query: 371 KARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY 430 K ++A ++ NLRLVI+ AKKY NRGL F+DLI EGN GL+KA K++YRRG+KFSTY Sbjct: 235 KGKKAFNALIHHNLRLVINNAKKYKNRGLSFIDLISEGNAGLIKAATKYDYRRGFKFSTY 294 Query: 431 ATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERML-- 488 ATWW+RQAITR++ADQAR +R+PVHM+ETINK+ +I R++ QE+G PT +++AE+ Sbjct: 295 ATWWVRQAITRAVADQARIVRVPVHMVETINKIIKIERELHQELGVPPTDKQIAEKYGNN 354 Query: 489 MPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVL 548 +K++ + KI +PIS++ IG D+DS DF++D ++ PL+ A+ L D+L Sbjct: 355 FTAEKVQYIRKINIDPISLDKSIGKDDDSSFSDFVKDESVVSPLEFASQNELSGILTDIL 414 Query: 549 -AGLTAREAKVLRMRFGIDMNTD------YTLEEVGKQFDVTRERIRQIEAKALRKLRHP 601 L E +++ RFGI ++ D ++LEE+ + +++E++R +E+K LRKL+HP Sbjct: 415 EKHLDEAERDLIKKRFGIGVDKDGNRISSHSLEELAAELQISKEKVRSLESKILRKLKHP 474 Query: 602 SRSEVLRSF 610 + + L+ F Sbjct: 475 QKRKKLKEF 483 >UniRef50_Q03066 RNA polymerase sigma-C factor n=22 Tax=Cyanobacteria RepID=RPSC_ANASP Length = 416 Score = 241 bits (616), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 116/244 (47%), Positives = 174/244 (71%), Gaps = 1/244 (0%) Query: 369 EAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS 428 +++ ++K+ M++ANLRLV+S+AKKY NRGL+ LDL+QEG +GL +AV+KF+ +GY+FS Sbjct: 171 QSQGLQSKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFS 230 Query: 429 TYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERML 488 TYA WWIRQ ITR+IA +RTIR+PVH+ E +NK+ + R++ QE GR PT E+LA + Sbjct: 231 TYAYWWIRQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLAIELD 290 Query: 489 MPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVL 548 M ++R+VL +S+ET +G D+D+ LG+ +E + P + ESL+ +L Sbjct: 291 MTPTQVREVLLRVPRSVSLETKVGKDKDTELGELLETDGVT-PEEMLMRESLQRDLQHLL 349 Query: 549 AGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLR 608 A LT+RE V+ MRFG+ Y+L E+G+ D++RER+RQIE+KAL+KLR P R ++R Sbjct: 350 ADLTSRERDVILMRFGLADGHPYSLAEIGRALDLSRERVRQIESKALQKLRQPKRRNLIR 409 Query: 609 SFLD 612 +L+ Sbjct: 410 DYLE 413 >UniRef50_D1J802 RNA polymerase sigma factor n=1 Tax=Mycoplasma hominis ATCC 23114 RepID=D1J802_MYCHP Length = 538 Score = 241 bits (614), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 116/251 (46%), Positives = 179/251 (71%), Gaps = 9/251 (3%) Query: 371 KARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY 430 K ++A+ +V+ NLRLVI+ AK+Y NRGL F+DLI EGN G+MKAV K++Y +G+KFSTY Sbjct: 281 KYKKARDMLVKRNLRLVINNAKRYKNRGLNFIDLISEGNAGIMKAVSKYDYTKGFKFSTY 340 Query: 431 ATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERML-- 488 ATWWIRQAITR++ADQART+R+PVHM+ETINK+ +I R++ QE G PT EE+A++ Sbjct: 341 ATWWIRQAITRAVADQARTVRVPVHMVETINKILKIERELQQENGYPPTDEEIAKKYGGD 400 Query: 489 MPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVL 548 +K+R + KI +PIS++ IG +E+S DF++D ++ P A+ E L ++++ Sbjct: 401 FTAEKVRYIRKINIDPISLDKNIGKEENSSFSDFVKDESVISPTSYASHEELSVIINEMI 460 Query: 549 -AGLTAREAK-VLRMRFGI-DMNTD----YTLEEVGKQFDVTRERIRQIEAKALRKLRHP 601 GL+ + + ++R RFGI D+ + +TL+E+ K+ +++E++RQ+E K LRKL+HP Sbjct: 461 EEGLSDQADRDLIRKRFGINDLKGNKYKPHTLDELSKELGISKEKVRQLETKVLRKLKHP 520 Query: 602 SRSEVLRSFLD 612 + L+ F + Sbjct: 521 QKRRKLKEFFN 531 >UniRef50_D2ML80 RNA polymerase, sigma 70 subunit, RpoD family n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2ML80_9BACT Length = 414 Score = 240 bits (613), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 115/229 (50%), Positives = 163/229 (71%), Gaps = 1/229 (0%) Query: 374 RAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW 433 RAK+ +V+ NLRLV+ IAK++T RG+ FLDLIQEGNIGLM+A ++F+YR+G+KFSTYATW Sbjct: 178 RAKEGLVQHNLRLVVDIAKRFTGRGMGFLDLIQEGNIGLMRAAERFQYRKGFKFSTYATW 237 Query: 434 WIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDK 493 W+RQ I R++ADQ+RTIR+PVH E ++ +IS ++ Q++GREP+ EE+A + + ++ Sbjct: 238 WVRQGILRAVADQSRTIRVPVHTTEAWQRMIKISHRLAQKLGREPSNEEIALALAVKPER 297 Query: 494 IRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTA 553 ++ + EPIS + P D E + LGD + D P + E +R+ H +L LT Sbjct: 298 VQHTTQAFLEPISFDQPNADGE-TFLGDCLPDDHASPPDEHLQEEQMRSQLHRLLRVLTP 356 Query: 554 REAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 602 RE +V+R+RFGI TLEEVGK +VTRERIRQIE A++KLR P+ Sbjct: 357 REEQVIRLRFGIGNGQSRTLEEVGKLLNVTRERIRQIEVLAMKKLREPT 405 >UniRef50_UPI00016C4C50 transcription initiation factor sigma 70 n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4C50 Length = 521 Score = 239 bits (610), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 123/303 (40%), Positives = 186/303 (61%), Gaps = 16/303 (5%) Query: 326 WSEKLHDVSEEVH----------------RALQKLQQIEEETGLTIEQVKDINRRMSIGE 369 W+++L+D+++E+ R ++L+ E +T +++ + R + Sbjct: 215 WTDELNDLADELKHLAIAHAAAASPADRARLGRQLRDAECRACMTADELAALVRVLRKRR 274 Query: 370 AKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFST 429 + +KE+ EANLRLV+SIAK Y NRGL F DLIQEGN GLM+AVDK+E+R +KF T Sbjct: 275 LAYQAVRKELAEANLRLVVSIAKNYRNRGLPFSDLIQEGNRGLMRAVDKYEWRLEFKFGT 334 Query: 430 YATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLM 489 YATWW+RQ ITR++ D ART+R+P H I ++++ ++ ++ GREPT EELAE + + Sbjct: 335 YATWWVRQGITRALHDNARTVRVPCHQISLLSRMEKLRGELTVATGREPTSEELAEALGV 394 Query: 490 PEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLA 549 ++ R + + + P+S+ +G D + L DF+ DT + P + L+ +VL Sbjct: 395 KPEEARSLRIVGRHPVSLNDSVGGDGERALEDFLSDTHISPPGEHVDANLLKERIGEVLK 454 Query: 550 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRS 609 L RE +V+ +RFG+ T TL+EV KQ+ +TRERIRQIEA+ L KLR P+RS L Sbjct: 455 SLAPREREVIELRFGLKDGTPKTLDEVAKQYGITRERIRQIEARGLLKLRQPTRSCRLEE 514 Query: 610 FLD 612 F D Sbjct: 515 FAD 517 Score = 42.0 bits (97), Expect = 0.072, Method: Compositional matrix adjust. Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 8/74 (10%) Query: 96 DPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEE 155 D + +Y+R+MG++ LL RE E+ +AKR+E N+ + + P + E+++++ A + Sbjct: 69 DALGLYLRQMGSIPLLNREKELALAKRLEHHRNRFRAAALLCPRLLDRAREKFEQIAAGQ 128 Query: 156 ARLSDLITGFVDPN 169 +DPN Sbjct: 129 T--------PIDPN 134 >UniRef50_P78022 RNA polymerase sigma factor rpoD n=2 Tax=Mycoplasma RepID=RPOD_MYCPN Length = 499 Score = 235 bits (600), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 138/313 (44%), Positives = 194/313 (61%), Gaps = 39/313 (12%) Query: 331 HDVSEEVH--RALQKLQQIEEETG-LTIEQVK-----DINRRMSIG----------EAKA 372 HDV E +H RA Q L I+E+ LT + + D N R +G E++ Sbjct: 172 HDVEEHIHEFRANQDLSIIDEDIEELTTKNISNRDKVDDNVRFFLGSLDSSKMLDFESEQ 231 Query: 373 RRAK--------------KEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK 418 R AK ++V +NLRLV+SIAKK+ RGL F DLIQEGN+GL+KA+ K Sbjct: 232 RIAKVLNSTDEESRKYAINQLVTSNLRLVVSIAKKHLERGLDFNDLIQEGNLGLLKAISK 291 Query: 419 FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP 478 F + G KFSTYATWWI+QAITR+IADQART+RIPVHM+ETIN+L + R + QE+GREP Sbjct: 292 FNWSLGNKFSTYATWWIKQAITRAIADQARTVRIPVHMVETINRLAKAERALNQELGREP 351 Query: 479 TPEELAERM-----LMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLD 533 T EELAE+M KI ++ +++ +P+S++ +G DE+S GDF+ DT ++P + Sbjct: 352 TAEELAEKMGGQAEGFTVKKIAEIKRLSLDPVSLDKTVGHDEESQFGDFVRDTDAQMPDE 411 Query: 534 SATTESLRAATHDVLAG-LTAREAKVLRMRFGI-DMNTDYTLEEVGKQFDVTRERIRQIE 591 + S ++L L+ +E ++RMR G+ N TL+EV ++ + RE+IRQIE Sbjct: 412 FTESRSNYEKIDELLNNCLSEQEELIVRMRIGMPPYNETKTLDEVSQKIKIPREKIRQIE 471 Query: 592 AKALRKLRHPSRS 604 KA+RKLR R+ Sbjct: 472 TKAIRKLRQAVRN 484 >UniRef50_C9XJA1 RNA polymerase sigma factor n=5 Tax=Clostridium difficile RepID=C9XJA1_CLODC Length = 301 Score = 234 bits (596), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 125/273 (45%), Positives = 184/273 (67%), Gaps = 13/273 (4%) Query: 344 LQQIEE----ETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGL 399 L++IEE G +E K+I S+ AK++ + +N RLV+SIAK+Y + Sbjct: 35 LKEIEEYKMLSAGEEVELAKEIINSSSV-------AKEKFINSNYRLVVSIAKRYKRDSI 87 Query: 400 QFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIET 459 LDLIQ GNIGL+KAV+K++Y++GYKFSTYATWWI+Q+ITR I D TIRIP+H+ + Sbjct: 88 DMLDLIQAGNIGLIKAVEKYDYKKGYKFSTYATWWIKQSITRYIDDCENTIRIPIHLHQR 147 Query: 460 INKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHL 519 IN + + +++L + REPT +E+A+ + DK+ ++L+ K +S++TP+ +DEDS L Sbjct: 148 INFVKKKKQELLNVLLREPTIDEIADACGLEVDKVLELLRRDKNVVSLDTPLKEDEDSSL 207 Query: 520 GDFI-EDTTL-ELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVG 577 +FI D ++ + +L+ ++L GL +E +VLRMRFGID + TLE++G Sbjct: 208 VEFIPSDADFKDVVIHEVEQHNLKEKIEELLTGLGEQEQQVLRMRFGIDDDDPKTLEQIG 267 Query: 578 KQFDVTRERIRQIEAKALRKLRHPSRSEVLRSF 610 K F VTRERIRQIEAKA+RKLRHPS+ + L+ F Sbjct: 268 KVFGVTRERIRQIEAKAIRKLRHPSKLKQLKHF 300 >UniRef50_Q39515 Chloroplast RNA polymerase sigma subunit n=1 Tax=Cyanidium caldarium RepID=Q39515_CYACA Length = 591 Score = 233 bits (595), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 114/245 (46%), Positives = 176/245 (71%), Gaps = 6/245 (2%) Query: 372 ARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYA 431 R+AK+ MV ANLRLV+SIAK+Y+NRG+ DLIQEG+IGL++ V+KF+ RG++FSTYA Sbjct: 349 GRKAKERMVTANLRLVVSIAKRYSNRGVALQDLIQEGSIGLIRGVEKFDAERGFRFSTYA 408 Query: 432 TWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPE 491 TWWIRQ+ITR+I+D +R+IR+PVH+ +TI+ + + ++ + E+GR P+ EE+ E + + Sbjct: 409 TWWIRQSITRAISDSSRSIRLPVHVHDTISLIRKQTKALQVELGRPPSEEEICESVGIDR 468 Query: 492 DKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTL---ELPLDSATTESLRAATHDVL 548 K R V++ ++ +S+ETP+ +D H F+ ++ + E ++ + ++LR + VL Sbjct: 469 AKYRLVMECSRNIVSLETPLRSGDDVH---FLGESLIAPEERAEENCSRDTLRESIEKVL 525 Query: 549 AGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLR 608 L+ RE +V+RMRFG+ TLEEVG +F+VTRERIRQIE+KAL+KLR P+ + L Sbjct: 526 HCLSTREREVIRMRFGLTDGRPRTLEEVGSRFNVTRERIRQIESKALKKLRTPAENNFLD 585 Query: 609 SFLDD 613 +L + Sbjct: 586 EYLGE 590 >UniRef50_Q116K5 RNA polymerase sigma factor n=1 Tax=Trichodesmium erythraeum IMS101 RepID=Q116K5_TRIEI Length = 496 Score = 231 bits (588), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 117/241 (48%), Positives = 165/241 (68%), Gaps = 2/241 (0%) Query: 371 KARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY 430 + RRAK +MV ANLRLV S+AK+Y NRGL F DLIQEG IGL++A +KF++ +GYKFSTY Sbjct: 257 QGRRAKNQMVTANLRLVTSVAKRYQNRGLDFQDLIQEGVIGLLRATEKFDHTKGYKFSTY 316 Query: 431 ATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMP 490 WWIRQAITR+I D +R +R+PV++ ETI+++ +I +Q+ E T EE+A RM M Sbjct: 317 GIWWIRQAITRAICDYSRIVRLPVYLYETISQIKKIVKQISIECS-PLTAEEVATRMEMT 375 Query: 491 EDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAG 550 +K++ +++ A+E +S++ PI E+ + I+ E P L+ VL Sbjct: 376 TEKLQFIIECAQETLSLDYPINKGENIIYKEMIKFNG-ETPTKYVFENCLQEDVESVLKT 434 Query: 551 LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSF 610 LT RE VL+MRFG+D + TL+E+G F++TRERIRQIEAKALRKL P R+ +LR + Sbjct: 435 LTERERNVLQMRFGLDDGQEKTLKEIGDTFNLTRERIRQIEAKALRKLEDPKRNHILREY 494 Query: 611 L 611 + Sbjct: 495 I 495 >UniRef50_Q7U3K5 RNA polymerase sigma factor n=21 Tax=Cyanobacteria RepID=Q7U3K5_SYNPX Length = 467 Score = 230 bits (586), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 120/287 (41%), Positives = 180/287 (62%), Gaps = 3/287 (1%) Query: 326 WSEKLHDVSEEVHRALQKLQQ-IEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANL 384 W K + + H +L +LQQ IE G + R + RRAK M++ANL Sbjct: 178 WPTK-QEWARAAHLSLAELQQRIEAGYGAWAREANLEARELKTALRNGRRAKDHMIQANL 236 Query: 385 RLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIA 444 RLV+++AKKY RG++ LDL+QEG +GL +AV+KF+ RG++FSTYA WWIRQ +TR+IA Sbjct: 237 RLVVAVAKKYQQRGMELLDLVQEGTLGLERAVEKFDPTRGFRFSTYAYWWIRQGMTRAIA 296 Query: 445 DQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEP 504 Q+RTIR+PVH+ E +N++ R +++ GR + +LA + + ED +R+ L Sbjct: 297 TQSRTIRLPVHVTEKLNRIKRAQQEIATNEGRIASIADLARALKLSEDTVRQTLARVPRS 356 Query: 505 ISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFG 564 +S++T +G D+D+ LGD IED P + T + L +L LT+REA VLR RFG Sbjct: 357 VSLDTRVGRDQDTQLGDLIEDGK-ATPEQTLTHDELHNDLEHLLDELTSREAAVLRRRFG 415 Query: 565 IDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 ++ +T TL ++G+ ++RER+RQIE +AL KLR P R +R ++ Sbjct: 416 LEDDTPQTLAQIGEALKLSRERVRQIETRALLKLRQPQRRSKVRDYI 462 >UniRef50_B3DXQ3 RNA polymerase sigma factor n=5 Tax=Chlamydiae/Verrucomicrobia group RepID=B3DXQ3_METI4 Length = 287 Score = 229 bits (584), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 116/257 (45%), Positives = 179/257 (69%), Gaps = 4/257 (1%) Query: 344 LQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLD 403 L++I + LT E+ ++ +R+ G+ +ARR +M++ANLRLV+ IA Y N GL D Sbjct: 12 LREISQIPLLTKEKEVELAKRIQQGDQEARR---QMIQANLRLVVKIAHDYANSGLPLPD 68 Query: 404 LIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKL 463 LI EGNIGLMKAVD+F+ +G K STYA WWI+Q+I R++A+Q++TIR+PVH+++ I K+ Sbjct: 69 LISEGNIGLMKAVDRFDPSKGGKLSTYAAWWIKQSIKRALANQSKTIRLPVHLVDKIAKM 128 Query: 464 NRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDED-SHLGDF 522 R++ Q+ + +GR+PT EELAE + M K+ ++ IA P S++ +G++ED + LG+ Sbjct: 129 RRVAMQLSEILGRDPTDEELAEELGMSTTKVAELRTIAIRPASLDATVGEEEDGTALGEL 188 Query: 523 IEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDV 582 ++D + P S ++L+ ++L L RE K+L +RFG++ N TLEE+GK+F V Sbjct: 189 VKDESAASPDQSVLDQNLKNTIMELLPKLDERERKILSLRFGLEGNEQMTLEEIGKEFHV 248 Query: 583 TRERIRQIEAKALRKLR 599 TRERIRQ++ ALRK+R Sbjct: 249 TRERIRQLQNIALRKIR 265 >UniRef50_Q60012 RNA polymerase principal sigma factor hrdD n=27 Tax=Actinomycetales RepID=HRDD_STRVF Length = 332 Score = 229 bits (584), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 109/230 (47%), Positives = 159/230 (69%) Query: 374 RAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW 433 RAK + +NLRLV+++A++Y GL LDLIQEGN GL++AV+KF+YR+G+KFSTYATW Sbjct: 95 RAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATW 154 Query: 434 WIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDK 493 WIRQAITRSIADQ+RTIR+PVH++E + ++ R+ R+ +E GR+P P E+A + ++ Sbjct: 155 WIRQAITRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGRDPEPAEVAAELGSTPER 214 Query: 494 IRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTA 553 + VL A++P+S+ + D ++ GD +EDT+ P S T D++ L Sbjct: 215 VIDVLDWARDPVSLNMAVDDAGETQFGDLLEDTSAVSPEQSVLTLLRSEELDDLIGRLDQ 274 Query: 554 REAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 603 R A +++MR+GID + TL EVGK+ +TRERIRQIE AL +L+ +R Sbjct: 275 RTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELKKLAR 324 >UniRef50_B7K407 RNA polymerase sigma factor n=27 Tax=Cyanobacteria RepID=B7K407_CYAP8 Length = 328 Score = 229 bits (583), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 106/229 (46%), Positives = 167/229 (72%), Gaps = 1/229 (0%) Query: 371 KARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY 430 + RAK++M+EANLRLV++IAKKY R ++FLDLIQEG++GL + V+KF+ +GYKFSTY Sbjct: 88 QGNRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTY 147 Query: 431 ATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMP 490 A WWIRQAITR+IA QARTIR+P+H+ E +NK+ + R++ Q++GR TP E+A + + Sbjct: 148 AYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQKLGRSATPAEIAAVLEIE 207 Query: 491 EDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAG 550 +IR+ L +A++PIS++ +GD++D+ L + +ED P T E LR +++ Sbjct: 208 PSQIRECLSMARQPISLDVRVGDNQDTELSELLEDHEAS-PDQYITQELLRQDLKNLMEE 266 Query: 551 LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLR 599 LT ++ VL +RFG++ + +L ++GK+ +++RER+RQ+E +AL +LR Sbjct: 267 LTPQQRSVLILRFGLEDGKELSLAKIGKKLNISRERVRQLEHQALAQLR 315 >UniRef50_A9ALE2 RNA polymerase sigma factor n=19 Tax=Burkholderia RepID=A9ALE2_BURM1 Length = 525 Score = 228 bits (581), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 110/224 (49%), Positives = 152/224 (67%), Gaps = 1/224 (0%) Query: 368 GEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKF 427 G+ K R A + M+EANLRLV+SIA+KY NRG+ DL+Q+G IGLM+A++KFEYRRG+KF Sbjct: 281 GQQKVRDATRAMLEANLRLVLSIARKYLNRGVDLSDLVQDGCIGLMRAIEKFEYRRGFKF 340 Query: 428 STYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERM 487 STYATWWIRQAI R++AD+ARTIR+PVH+ + ++ R + + Q GR+PTP ELA Sbjct: 341 STYATWWIRQAIARAVADRARTIRVPVHVGDQHQRVRRQALRFRQRTGRQPTPAELAAET 400 Query: 488 LMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDV 547 + EDK+R +L + EP+S++TP+ D D+ L D IED T P + +R + Sbjct: 401 GLAEDKLRAILALPAEPVSLDTPL-PDADTGLVDLIEDETSASPFEQLAGTRMRECVRSL 459 Query: 548 LAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIE 591 L +T EA VLR RFG+ T + + K ++RER+RQIE Sbjct: 460 LRSVTPTEADVLRRRFGLGGTEPDTYDAIAKDAGMSRERVRQIE 503 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 1/154 (0%) Query: 4 NPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDAD 63 P + L+ EQGYLT+A++ D LP + D ++ + + D+GI V++E Sbjct: 12 TPLDPIIQLLALASEQGYLTHADLVDALPPESDSPDALDVVRAALADIGITVLDEPAAPP 71 Query: 64 DLMLAENT-ADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKR 122 A D D E +L + +TDP+ +YMR M V LLTRE EI +A+ Sbjct: 72 PFAAAPAVDVDRDTLEEGRALLGDLARGASASTDPLALYMRRMHAVPLLTREDEIALARE 131 Query: 123 IEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEA 156 +E G +Q+ ++A P A+ LL + A A Sbjct: 132 LETGRHQMLHALAGCPPAVDALLARIGTTTAASA 165 >UniRef50_B1ZU80 RNA polymerase sigma factor n=6 Tax=Verrucomicrobia RepID=B1ZU80_OPITP Length = 353 Score = 228 bits (581), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 115/268 (42%), Positives = 182/268 (67%), Gaps = 5/268 (1%) Query: 344 LQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLD 403 LQ+I + LTI++ + +R+ G+ AR M++ANLRLV+ IA Y + GL LD Sbjct: 55 LQEIGKTALLTIDEEISLAKRIRKGDKAAR---DHMIKANLRLVVKIAMDYKDFGLPLLD 111 Query: 404 LIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKL 463 LI EGNIGL+KAV++F+ R+G K STYA WWI+Q+I R++A+Q++TIR+PVH+++ I+K+ Sbjct: 112 LISEGNIGLIKAVERFDPRKGGKLSTYAAWWIKQSIKRALANQSKTIRLPVHLVDKISKM 171 Query: 464 NRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSH-LGDF 522 R + + +E+GREPT EELA + +P K+ + ++ P S++ P+G++ DS G+ Sbjct: 172 RRTAMALTEELGREPTDEELAIELQIPTSKVAHLKSVSVRPASLDAPVGEEGDSATFGEI 231 Query: 523 IEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDV 582 + D P + ++L + H ++A L REA+++R+RFG+D + TLEEVG++F V Sbjct: 232 VGDDNAVSPFEGLREKNLNSDLHAMVASLDEREAEIIRLRFGLDGKDELTLEEVGRRFHV 291 Query: 583 TRERIRQIEAKALRKLRHP-SRSEVLRS 609 TRERIRQ+E AL K+R ++ E +R+ Sbjct: 292 TRERIRQLEYLALSKMRKAMAKHEAIRT 319 >UniRef50_B5JCN6 RNA polymerase sigma factor n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JCN6_9BACT Length = 377 Score = 227 bits (579), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 111/257 (43%), Positives = 178/257 (69%), Gaps = 4/257 (1%) Query: 344 LQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLD 403 LQ+I LT Q + RR+ GE +AR M+++NLRLV+ IA Y + GL LD Sbjct: 85 LQEIGRIDLLTPAQEVTLARRIQAGEKEARDL---MIKSNLRLVVKIAHDYKDFGLPVLD 141 Query: 404 LIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKL 463 LI EGNIGL+KAV++F+ +G K STYA WWI+Q+I R++A+Q++TIR+PVH+++ I+++ Sbjct: 142 LISEGNIGLVKAVERFDPDKGGKLSTYAAWWIKQSIKRALANQSKTIRLPVHLVDKISRM 201 Query: 464 NRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDS-HLGDF 522 +++ + +E+GREPT +ELAE + MP +K+ + ++ P S+ P+G+D +S G+ Sbjct: 202 RKMALMLTEELGREPTDQELAEMLEMPVNKVSHLKSVSVRPTSLNAPVGEDGNSTEFGEI 261 Query: 523 IEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDV 582 + D P ++ +SLR H+++ GL REA+++R+RFG++ ++ TLEEVG+ FD+ Sbjct: 262 VGDDNAPTPYENLHEKSLRGDLHEMIDGLEDREAEIIRLRFGLNGDSPLTLEEVGQVFDI 321 Query: 583 TRERIRQIEAKALRKLR 599 TRER+RQ++ AL K+R Sbjct: 322 TRERVRQLQNIALSKMR 338 >UniRef50_C5J5B6 DNA-directed RNA polymerase subunit D (Fragment) n=1 Tax=uncultured gamma proteobacterium RepID=C5J5B6_9GAMM Length = 257 Score = 227 bits (579), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 121/270 (44%), Positives = 177/270 (65%), Gaps = 13/270 (4%) Query: 107 TVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFV 166 TVELLTREGEI IAKRIE+G+ ++ ++A +P + ++L +Y +++EE RL+DLITG+ Sbjct: 1 TVELLTREGEIVIAKRIEEGLRELMKAMALFPGTVEHILNEYALIDSEERRLNDLITGYP 60 Query: 167 DPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRA 226 D A++D+ P A V + + DDD + DPE A+ +F EL+ Sbjct: 61 D-TADDDIPPPAPQVTAADKADS------------DDDEDEAATGPDPEEAKIRFTELKK 107 Query: 227 QYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERL 286 QY T +++ GR H A+ E+ KL E+FK F+L P+QF+ L+ +R ++ R+R E+ Sbjct: 108 QYQKTSNSVNRNGRDHPRAEAELEKLGELFKSFKLTPRQFEPLLQHIRAVLTRLRRHEKT 167 Query: 287 IMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQ 346 +M L V KMP+K FIT F GNET++ W + I KP+SE L +V EV RA +K++ Sbjct: 168 VMSLAVRGAKMPRKEFITSFPGNETNEKWIDKHIRAKKPYSELLVNVKTEVIRAQKKIKL 227 Query: 347 IEEETGLTIEQVKDINRRMSIGEAKARRAK 376 +EEETGLT+ ++KDINR+MSIGEAK+RRAK Sbjct: 228 LEEETGLTVTEIKDINRQMSIGEAKSRRAK 257 >UniRef50_Q2T2N0 RNA polymerase sigma factor n=32 Tax=pseudomallei group RepID=Q2T2N0_BURTA Length = 483 Score = 227 bits (578), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 108/245 (44%), Positives = 166/245 (67%) Query: 368 GEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKF 427 GEA+ A M EANLRLV+SIA+KY +RGL DL+QEGN+GL++A++KFEYRRG+KF Sbjct: 236 GEARISAATARMAEANLRLVLSIARKYASRGLDLADLLQEGNLGLLRAIEKFEYRRGFKF 295 Query: 428 STYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERM 487 STYATWWIRQAI+R+IAD+ARTIR+PVH+ + ++ +++ ++ + G + EL+E Sbjct: 296 STYATWWIRQAISRAIADRARTIRVPVHVGDEARRVRKVADRIERRSGARASLAELSEAT 355 Query: 488 LMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDV 547 + +++R VL + +EP S+ P+GDD+ + GD +ED + D+ + + Sbjct: 356 GLSAERLRAVLMLPREPRSLNAPLGDDDQAEFGDIVEDASTPSLFDALAQGQMCDVVTSL 415 Query: 548 LAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVL 607 L ++A+EA +LR RFGI + ++ E++ Q V+RE+IR+IE +AL+ LR + + Sbjct: 416 LKTMSAQEADILRRRFGIGGDEPWSYEQIAAQAGVSREQIRRIEKRALQTLRITADACNA 475 Query: 608 RSFLD 612 R FLD Sbjct: 476 RDFLD 480 >UniRef50_UPI0001699122 RNA polymerase, sigma 70 subunit, RpoD n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001699122 Length = 309 Score = 224 bits (572), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 134/267 (50%), Positives = 174/267 (65%), Gaps = 16/267 (5%) Query: 6 QSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDL 65 +SQLK L+ +GKEQG+LTYAEVNDHLPE IV+ +QIEDI++MINDMGI V E APD +D Sbjct: 7 RSQLKQLIAKGKEQGFLTYAEVNDHLPEGIVEPEQIEDIVRMINDMGITVHETAPDLEDK 66 Query: 66 MLAEN--TADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRI 123 L++ T+D+DAAE AA L+SV+SE GRTTDPVRMYMREMGTVELLTREGE+ IAKRI Sbjct: 67 TLSDEAVTSDDDAAEEAAAALASVDSEFGRTTDPVRMYMREMGTVELLTREGELRIAKRI 126 Query: 124 EDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGS 183 EDG+ QV ++A +P I L +V E R++D+I GF+DPN E D P + Sbjct: 127 EDGLKQVSAALATFPVTIEMLHSMLTKVGEGEKRMADVINGFIDPN-ETDEIP----IPR 181 Query: 184 ELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHA 243 +D D+EDE+ D DPE K EL +Y +K GR++ Sbjct: 182 PPRAKDSGDEEDEEPV---------DTGPDPEEVAAKTKELGKRYNALCSALKKHGRNNP 232 Query: 244 TAQEEILKLSEVFKQFRLVPKQFDYLV 270 Q+ + +E F +F+LVP F++LV Sbjct: 233 KTQKALEACAESFLEFKLVPNAFNHLV 259 >UniRef50_UPI00003842B2 COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI00003842B2 Length = 756 Score = 224 bits (572), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 120/247 (48%), Positives = 160/247 (64%), Gaps = 7/247 (2%) Query: 363 RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR 422 RRM G ARRA++ ANL+LV+ AKK+ GL + D IQEGN+GL+KAV++F++R Sbjct: 515 RRMEAGLETARRARERFALANLKLVVWGAKKFG--GLTWPDRIQEGNLGLLKAVERFDHR 572 Query: 423 RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEE 482 RG KFSTYATWWI+QA+TR++AD+ RTIRIPVH E + KL R ++ GRE PEE Sbjct: 573 RGAKFSTYATWWIKQAVTRAVADKGRTIRIPVHAQEAMRKLRRAQNEVFALTGREALPEE 632 Query: 483 LAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRA 542 + E +P ++R+ L +A+EP S+ D E+ L + P + ++A Sbjct: 633 VGELTEIPLARVRRFLAVAEEPASL-----DVEEVGLHAAEMASREPDPEERLAVAEIKA 687 Query: 543 ATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 602 L L REA V+R+RFGI +YTLEE+G+QF VTRERIRQIEAKALRKL HP Sbjct: 688 MVRGQLELLPPREATVIRLRFGIGCEREYTLEEIGQQFGVTRERIRQIEAKALRKLSHPG 747 Query: 603 RSEVLRS 609 R + L+ Sbjct: 748 RIKALQG 754 >UniRef50_B9M4Z2 RNA polymerase sigma factor n=12 Tax=Desulfuromonadales RepID=B9M4Z2_GEOSF Length = 358 Score = 224 bits (571), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 116/256 (45%), Positives = 177/256 (69%), Gaps = 3/256 (1%) Query: 344 LQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLD 403 L++I++ LT ++ K++ R+ G+ AR +M+E+NLRLV+ IAK+Y NRGL FLD Sbjct: 89 LREIQKTKLLTADEEKELAARIDRGDKAAR---DKMIESNLRLVVKIAKRYINRGLPFLD 145 Query: 404 LIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKL 463 LI+EGN+GL+KAV++F+ + +FSTYATWWIRQ+I R++ +Q+RTIR+PVH+ + INK+ Sbjct: 146 LIEEGNMGLIKAVERFKLSKECRFSTYATWWIRQSIERALVNQSRTIRLPVHVSDDINKM 205 Query: 464 NRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFI 523 RI+R++LQ++ REP+ +E+A M + IR+++ + K+ S+E P+G++ D L D I Sbjct: 206 LRITRELLQKINREPSIKEVATAMEVNSAYIRRLMVLLKKTYSIERPMGENNDYFLIDTI 265 Query: 524 EDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVT 583 EDT+ P + + L+ E K+L +RFG+D TL+ +G+ F VT Sbjct: 266 EDTSTVSPAELLEDVNRYEMVSKWFDTLSDNEKKILTLRFGLDDKDPQTLDTIGRSFGVT 325 Query: 584 RERIRQIEAKALRKLR 599 RERIRQIEAK+L KLR Sbjct: 326 RERIRQIEAKSLEKLR 341 >UniRef50_Q9ZTL1 RNA polymerase sigma factor n=1 Tax=Cyanidium caldarium RepID=Q9ZTL1_CYACA Length = 589 Score = 224 bits (570), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 122/290 (42%), Positives = 184/290 (63%), Gaps = 14/290 (4%) Query: 330 LHDVSEEVHRALQKLQQIEE---ETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRL 386 L V E++ R + +L + E ET +++ +++ K RRAK MV ANLRL Sbjct: 290 LEAVREDLRRRIGRLPREHEWAMETNMSVSELRG-------KLIKGRRAKNRMVAANLRL 342 Query: 387 VISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQ 446 VI AK++ NRG+ F DL+QEG+IGL++ V+K++ RG++FSTYA+WWIRQ I +++ + Sbjct: 343 VICFAKRFRNRGVAFQDLVQEGSIGLIRGVEKYDANRGFRFSTYASWWIRQGIHKALLEC 402 Query: 447 ARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPIS 506 ++ R+PVH+ E I ++ R S +++ +GREPT E+A ++ MPE+K+ +L+ A+ +S Sbjct: 403 SKMFRLPVHVNEMIKEIRRCSYELMNILGREPTKLEIAMKVGMPEEKVIFLLQRAQTALS 462 Query: 507 METPI-GDD---EDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMR 562 +E P+ G D E LGD + T P DSA SLR L+ L RE +V+RMR Sbjct: 463 LEMPLRGSDSSLESRTLGDVVSSTASPSPEDSAFGTSLRYDLERALSQLDFREREVIRMR 522 Query: 563 FGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 FG+D +L EVG F VTRER+RQIE +ALRKLR P + L+ +++ Sbjct: 523 FGLDDGRTKSLGEVGSLFCVTRERVRQIETRALRKLRDPRCNIFLKEYME 572 >UniRef50_B2IZW2 RNA polymerase sigma factor n=14 Tax=Cyanobacteria RepID=B2IZW2_NOSP7 Length = 332 Score = 223 bits (569), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 111/251 (44%), Positives = 171/251 (68%), Gaps = 12/251 (4%) Query: 356 EQVKDINRRMSIGEA-------KARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEG 408 E +++IN IGE + ++AK++M++ANLRLV+SIAKKY L FLDLIQEG Sbjct: 75 EWIENIN----IGEKSLLQQLHQGQKAKQKMIQANLRLVVSIAKKYQRHNLDFLDLIQEG 130 Query: 409 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISR 468 ++GL + V+KF+ +GYKFSTY WWIRQAITR+IA+Q RTIR+P+H+ E +NK+ RI R Sbjct: 131 SLGLERGVEKFDPTKGYKFSTYGYWWIRQAITRAIAEQGRTIRLPIHITEKLNKIKRIQR 190 Query: 469 QMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTL 528 ++ Q++GR PT ++AE + + +IR L +A++P+S+E +G D+D L D +ED L Sbjct: 191 ELTQKLGRTPTAVDIAEELSLDPKQIRDYLLLARQPVSLELRVGSDKDIELQDMLEDNGL 250 Query: 529 ELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIR 588 P A + L+ ++L+ L ++ ++L RFG+ + +L E+G++ ++RER+R Sbjct: 251 S-PELYADHKFLQQNIQNLLSKLNPQQRQILTFRFGLTDGNELSLAEIGQRMGISRERVR 309 Query: 589 QIEAKALRKLR 599 QIE +AL LR Sbjct: 310 QIEQQALGSLR 320 >UniRef50_D0LRC2 RNA polymerase sigma factor n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LRC2_HALO1 Length = 436 Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 108/233 (46%), Positives = 160/233 (68%), Gaps = 3/233 (1%) Query: 370 AKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFST 429 A+ R + E V ANLRLV+++A++Y G+ DLIQEGN+GLM AV +F+YRRG +FST Sbjct: 197 ARGARLRNEFVHANLRLVVTMARRYDRGGMPLADLIQEGNLGLMHAVSRFDYRRGLRFST 256 Query: 430 YATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLM 489 YA WWIR AI R++AD++R +RIPVHM+E +L ++ +++ E+GREPTP ELA+ + Sbjct: 257 YACWWIRHAIGRALADKSRAVRIPVHMLEAQQQLAKVQAKLIGELGREPTPSELAKAAQV 316 Query: 490 PEDKIRKVLK-IAKEPISMETPIGDDEDSHLGDFIEDTTLE--LPLDSATTESLRAATHD 546 P K+ ++ + + +P+S++ P+ DD+D GD + D E P+D TT++L + Sbjct: 317 PLAKLNQMHRYLMGQPMSLDRPLYDDDDRAFGDMLADPLSEDSSPVDDLTTQTLTSRVET 376 Query: 547 VLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLR 599 +L LT EA VLR RFG+ + + T E+G Q+D++RERIRQI+ AL KLR Sbjct: 377 LLDHLTPIEADVLRQRFGLMDDEERTFREIGDQYDLSRERIRQIQNAALGKLR 429 >UniRef50_Q0SG50 RNA polymerase sigma factor n=1 Tax=Rhodococcus jostii RHA1 RepID=Q0SG50_RHOSR Length = 520 Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 116/260 (44%), Positives = 175/260 (67%), Gaps = 6/260 (2%) Query: 353 LTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL 412 L+ ++ +D++R G+ AK+ +EANLRLV+SIA++Y RGL LDL+QEGN+GL Sbjct: 265 LSDQRHRDLHRVCRDGQ----HAKRRFLEANLRLVVSIARRYQGRGLDLLDLVQEGNLGL 320 Query: 413 MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQ 472 ++AV+KF+Y+ G+KFSTYATWWIRQAITR++ADQ+R IRIPVHM+E I++L + ++ + Sbjct: 321 IRAVEKFDYKTGFKFSTYATWWIRQAITRALADQSRVIRIPVHMVEQIDQLGKERARLTK 380 Query: 473 EMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPL 532 E GREPTP ELA + + I + K + +S++ + D H G ED + Sbjct: 381 ETGREPTPSELATALDTTIEHIGDLEKYDQRVLSLD--VLTDNAEHDGLDFEDDLAVVAE 438 Query: 533 DSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEA 592 + A VL+ L+ R+A+V+R+R+G+ + YTL+E+GK + VTRERIRQIE+ Sbjct: 439 EVAERRRFYETLESVLSPLSERDAQVIRLRYGLTGSDPYTLDEIGKIYGVTRERIRQIES 498 Query: 593 KALRKLRHPSRSEVLRSFLD 612 K L+ ++ S +++LR F D Sbjct: 499 KLLKAMKEESVADILRPFYD 518 >UniRef50_B8LLW6 Putative uncharacterized protein n=2 Tax=Picea sitchensis RepID=B8LLW6_PICSI Length = 592 Score = 223 bits (567), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 123/315 (39%), Positives = 194/315 (61%), Gaps = 26/315 (8%) Query: 319 AIAMNKPWSE-KLHDVSEEV--HRALQKLQQI-------EEETG-----------LTIEQ 357 +I + + WS +L SEEV R +Q L ++ +E+TG + ++Q Sbjct: 282 SIRLLRDWSSSRLLTASEEVELSRGIQDLIKLDRIRAKYKEKTGKEPTLAQWAEVIGVDQ 341 Query: 358 VKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD 417 K + R+ +G R + +++ NLRLVIS+AK Y NRGL DLIQ G++GLM++ + Sbjct: 342 -KTLKMRLEVG----RDSFDKIINCNLRLVISVAKNYQNRGLSLQDLIQAGSMGLMRSAE 396 Query: 418 KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE 477 KF+Y RG+KFSTYA WWIRQ+IT+++ +Q+RTIR+PVH++E++ ++ R + QE R+ Sbjct: 397 KFDYSRGFKFSTYAYWWIRQSITKALTEQSRTIRLPVHIVESMTRIRTAWRLLYQEHKRD 456 Query: 478 PTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATT 537 PT EE+AE + ++R V + ++ P S++ +G D D + + DT E + Sbjct: 457 PTKEEVAEVAGISMTRLRHVTRCSRVPTSLDRCVGKDMDEKFSEIVADTNSESTETIVSK 516 Query: 538 ESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRK 597 E + VL LTARE +V+R+R+G+D +L EVG+ F ++RER+RQIE KA+RK Sbjct: 517 ELFKKDLDRVLDTLTAREKQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQIEMKAMRK 576 Query: 598 LRHPSRSEVLRSFLD 612 LR R++ L+ +LD Sbjct: 577 LRQNHRTQHLKHYLD 591 >UniRef50_B3QZV6 RNA polymerase sigma factor n=1 Tax=Candidatus Phytoplasma mali AT RepID=B3QZV6_PHYMT Length = 419 Score = 223 bits (567), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 125/266 (46%), Positives = 182/266 (68%), Gaps = 5/266 (1%) Query: 348 EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 407 ++E L+ +++ ++N + I + +AK +VEAN RLV+SIAK+Y RGL+FLDLIQE Sbjct: 153 KKEIELSEKEISELNDILKI----SNKAKHRLVEANYRLVVSIAKRYIRRGLEFLDLIQE 208 Query: 408 GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 467 GN GLM+A++KF +G K STYAT+WI Q I R++ADQAR IR+PVH+++ IN ++ Sbjct: 209 GNRGLMRAIEKFNIDKGCKLSTYATFWIVQKILRAVADQARIIRLPVHIVDRINIISMAK 268 Query: 468 RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 527 ++ ++ REPT EEL+E + + E K+R + I K+PIS+E +G+ +DS LG+FI D Sbjct: 269 SKLRLKLHREPTIEELSEFINISEKKLRIIEIIKKKPISLEARVGEKDDSSLGEFISDPD 328 Query: 528 LELPLDSATTESLRAATHDVLA-GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRER 586 P D E ++ +++L LT RE K+LRMR+G+ +TLEEVG F VTRER Sbjct: 329 SLSPHDYMLQEIMKNTLNEILEDTLTDREEKILRMRYGLSNGKVHTLEEVGNVFGVTRER 388 Query: 587 IRQIEAKALRKLRHPSRSEVLRSFLD 612 IRQIEAKA R+LR P+R L++ + Sbjct: 389 IRQIEAKAFRRLRTPARQNKLKTLYN 414 >UniRef50_C6X620 RNA polymerase sigma factor RpoD n=68 Tax=Bacteria RepID=C6X620_FLAB3 Length = 294 Score = 223 bits (567), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 111/268 (41%), Positives = 183/268 (68%), Gaps = 3/268 (1%) Query: 344 LQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLD 403 LQ+I + +T ++ D+ +++ G+ R A +++++ANLR V+S++K+Y N+GL D Sbjct: 28 LQEIGKVDLITADEEVDLAQKIRAGD---RVALEKLIKANLRFVVSVSKQYQNQGLSLPD 84 Query: 404 LIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKL 463 LI EGN+GLMKA +++ RG+KF +YA WWIRQ+I +++A+Q+R +R+P++ I +INK+ Sbjct: 85 LINEGNLGLMKAAKRYDETRGFKFISYAVWWIRQSILQALAEQSRIVRLPLNKIGSINKI 144 Query: 464 NRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFI 523 N+ + QE R P+PEELAE + M ED I++ +K + +SM+ P+ + EDS+L D + Sbjct: 145 NKAYAHLEQENERPPSPEELAEVLDMSEDDIKESMKNSGRHLSMDAPLVEGEDSNLYDVL 204 Query: 524 EDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVT 583 P ESL+ L LT REA ++R+ FG++ TLEE+G+ FD+T Sbjct: 205 RSGESPSPDKELMLESLQIEIERALQTLTPREADLVRLYFGLNGKHPMTLEEIGETFDLT 264 Query: 584 RERIRQIEAKALRKLRHPSRSEVLRSFL 611 RER+RQI+ KA+++L+H +RS++L+S+L Sbjct: 265 RERVRQIKEKAIKRLKHNTRSKILKSYL 292 >UniRef50_B0N062 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0N062_9BACT Length = 286 Score = 221 bits (564), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 110/268 (41%), Positives = 182/268 (67%), Gaps = 4/268 (1%) Query: 344 LQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLD 403 LQ+I +E +T+E+ ++ +R+ G+ + A +++ +ANLR V+S+AK+Y N+GL D Sbjct: 22 LQEIGKEELITVEEEVELAQRIKKGD---QEALEKLTKANLRFVVSVAKQYQNQGLSLPD 78 Query: 404 LIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKL 463 LI EGN+GL+KA +KF+ RG+KF +YA WWIRQ+I +++A+Q+R +R+P++ + ++NK+ Sbjct: 79 LINEGNLGLIKAAEKFDETRGFKFISYAVWWIRQSILQALAEQSRIVRLPLNQVGSLNKI 138 Query: 464 NRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFI 523 N+ + QE R P+PEELA + +P++K+ L++A +S++ P D ED+ L D + Sbjct: 139 NKAFARFEQEHERTPSPEELANELELPKEKVTDTLRVAGRHVSVDAPFADGEDNSLLDVL 198 Query: 524 EDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVT 583 + ESL L LT RE +++ FGI ++ TLEE+G++FD+T Sbjct: 199 VNPDSPNADRGLINESLSTEVDRALETLTERERDIIKYFFGIGC-SEMTLEEIGEKFDLT 257 Query: 584 RERIRQIEAKALRKLRHPSRSEVLRSFL 611 RER+RQI+ KA+R+LRH SRS++L+S+L Sbjct: 258 RERVRQIKEKAIRRLRHSSRSKLLKSYL 285 >UniRef50_A9GLY8 RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GLY8_SORC5 Length = 446 Score = 221 bits (563), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 113/238 (47%), Positives = 166/238 (69%), Gaps = 1/238 (0%) Query: 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 434 AK E+V+ANLRL ++IA+++ G+ LDL+QEGN+GL++A DKFEYRRG++F TYA WW Sbjct: 209 AKSELVQANLRLAVAIAREHQRFGVPLLDLVQEGNLGLIRAADKFEYRRGHRFGTYAAWW 268 Query: 435 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKI 494 I+QAI R+I +Q + +R+PVH+ +++ R R ++QE GREP+ EE+AER + +K+ Sbjct: 269 IKQAIKRTILNQGKPVRMPVHLTAIRSQVVRARRDLVQERGREPSVEEIAERSGLTVEKV 328 Query: 495 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAR 554 R + ++A EP+S++ P+G++ D+ GD + + P D L T ++L L R Sbjct: 329 RVISELALEPLSLDAPVGEEGDTRYGDLLANDE-PTPADMLARRRLIEQTRELLDSLQPR 387 Query: 555 EAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 E ++LR RFG+D N D TLEE+G+ F +TRERIRQIEAK L KLR SR L S+L+ Sbjct: 388 ERELLRRRFGLDGNEDETLEEIGQSFSLTRERIRQIEAKLLEKLRTRSRQRELGSYLE 445 >UniRef50_Q8S9C8 RNA polymerase sigma factor n=1 Tax=Cyanophora paradoxa RepID=Q8S9C8_CYAPA Length = 427 Score = 220 bits (561), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 114/247 (46%), Positives = 166/247 (67%), Gaps = 7/247 (2%) Query: 371 KARRAKKEMVEANLRLVISIAKKYTNR-GLQFLDLIQEGNIGLMKAVDKFEYRRGYKFST 429 K RRA+ +V++NLR V+SIAKKY N+ + DLIQEG+IGLMKA ++F+ +G+KF T Sbjct: 174 KGRRARARLVQSNLRWVVSIAKKYANKHTMPLQDLIQEGSIGLMKAAERFDLDKGFKFLT 233 Query: 430 YATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLM 489 YATWWIRQAI RS+ DQ RTIR+PVH+ +++ + + +Q+ +GR PTPEELA+ + + Sbjct: 234 YATWWIRQAIFRSLQDQGRTIRLPVHVHDSLYLIKKTRQQLASRLGRIPTPEELADELNI 293 Query: 490 PEDKIRKVLKIAKEPISMETPIGDDEDS-----HLGDFIEDTTLELPLDSATTESLRAAT 544 P ++ + + A PIS+E+PI + S +LGDFIE L+ P + LR Sbjct: 294 PVSRLAFITQAASLPISLESPISSETSSTKARNNLGDFIESECLQ-PDEQLERTMLREDL 352 Query: 545 HDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRS 604 +VLA L ARE ++RMR+G+ + TL+E+G+ +TRERIRQIE A+RKL+ P R Sbjct: 353 ENVLATLKARERDIIRMRYGLVDGSPKTLDEIGEIVGLTRERIRQIEQSAMRKLKAPYRK 412 Query: 605 EVLRSFL 611 +L ++ Sbjct: 413 AILCDYI 419 >UniRef50_B7GEJ9 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7GEJ9_PHATR Length = 329 Score = 219 bits (559), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 109/253 (43%), Positives = 167/253 (66%), Gaps = 14/253 (5%) Query: 374 RAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW 433 RAK + E+N+RLV+SIAK+Y +RGL F DL QEG +GL +A +KF+ RG++FSTYA+W Sbjct: 76 RAKAALTESNIRLVVSIAKRYQHRGLSFQDLAQEGILGLTRACEKFDPERGFRFSTYASW 135 Query: 434 WIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDK 493 WI+Q+I R+IADQ RTIR+PVH+ + IN L ++ R++ E+GR+ EE+ E+ + +K Sbjct: 136 WIKQSIMRAIADQGRTIRLPVHIHDQINALRKVERELKAELGRDARLEEITEKSTLTAEK 195 Query: 494 IRKVLKIAKEPISMETPI-------------GDDEDSHLGDFIEDTTLELPLDSATTESL 540 I + +++++ +SME + G D LGD + D + P + A+ + L Sbjct: 196 IEFLNRVSQQDVSMEQELRTSKSKGSSAGLGGPDGGLTLGDVMGDPEAQ-PAEEASYQML 254 Query: 541 RAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 600 + ++ L +RE V+RMRFG+D TLEE+G++F VTRERIRQIE++AL KLR Sbjct: 255 KDDISRLICTLNSREQAVIRMRFGLDDGKAKTLEEIGRRFSVTRERIRQIESRALHKLRQ 314 Query: 601 PSRSEVLRSFLDD 613 P R+ ++ ++ D Sbjct: 315 PYRNHAVKCYVKD 327 >UniRef50_B8G577 RNA polymerase sigma factor n=4 Tax=Chloroflexus RepID=B8G577_CHLAD Length = 314 Score = 219 bits (559), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 105/251 (41%), Positives = 168/251 (66%) Query: 363 RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR 422 +R++ A +A+ +++ +NLRLV+SIA++Y GL LDLIQEG+IGLM+AVDKF+ Sbjct: 62 KRLAAQVAAGEQARAQLINSNLRLVVSIARRYQGHGLTLLDLIQEGSIGLMRAVDKFDAG 121 Query: 423 RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEE 482 RG KFSTYAT+WIRQ+I R+IAD +RT+R+PVH+ E +++L R+ +++ Q++ REPT EE Sbjct: 122 RGLKFSTYATYWIRQSIGRAIADHSRTVRLPVHLGERLSRLARLRQELAQQLDREPTLEE 181 Query: 483 LAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRA 542 LA + +++ + + P S++ +D L + + D P D + L+A Sbjct: 182 LANAAGLSVEQVERAEQAGLAPTSLDEAHTEDGGGALSEILTDPLQPTPFDEVSEGMLQA 241 Query: 543 ATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 602 L+ L+ RE +LR+R+G+D +TLE++G++ +TRER+RQ+E +ALRKLR PS Sbjct: 242 DVQAALSQLSPRERNILRLRYGLDGEPMHTLEQIGQRLRLTRERVRQLEYEALRKLRDPS 301 Query: 603 RSEVLRSFLDD 613 L+ +++D Sbjct: 302 LYPQLQGYVND 312 >UniRef50_B2J5S6 RNA polymerase sigma factor n=13 Tax=Cyanobacteria RepID=B2J5S6_NOSP7 Length = 378 Score = 218 bits (556), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 110/242 (45%), Positives = 170/242 (70%), Gaps = 1/242 (0%) Query: 371 KARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY 430 + R AK++M+ +NLRLV+SIAK+Y NRG+ FLDLIQEG +GL +A +KF+ +GYKFSTY Sbjct: 136 QGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTY 195 Query: 431 ATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMP 490 A WWIRQAITR+IA+ ARTIR+P+H++E +NKL + R++ Q++ R PT E+AE + + Sbjct: 196 AYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLCRNPTEGEMAEALDIS 255 Query: 491 EDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAG 550 ++R++ ++ ++ +S+ +G +ED+ L D +ED P +R +VL Sbjct: 256 VQQLRQLQQLRRQALSLNHRVGKEEDTELMDLLEDEDNLSPEAKMNENMMRQEIWEVLGD 315 Query: 551 -LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRS 609 LT RE V+ +R+G+ + TLEEVG F+++RER+RQI++KA+RKLR P ++ L+ Sbjct: 316 VLTPREKDVISLRYGLTTSEPCTLEEVGNMFNLSRERVRQIQSKAMRKLRRPHIAKRLKG 375 Query: 610 FL 611 +L Sbjct: 376 WL 377 >UniRef50_C1SHQ6 RNA polymerase sigma factor n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SHQ6_9BACT Length = 322 Score = 218 bits (556), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 112/258 (43%), Positives = 163/258 (63%), Gaps = 4/258 (1%) Query: 344 LQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLD 403 L +I + LT EQ ++++ + G +K+ M++ NLRLV+SIAKKY NRG+ +D Sbjct: 55 LNEISKYPVLTREQEGELSQGIEKG---CNDSKETMIKCNLRLVVSIAKKYINRGMNLVD 111 Query: 404 LIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKL 463 L++EGNIGL+KAV+KF+Y +G+KFSTYATWWIRQAI R+I +Q R +RIPVHM E I+K+ Sbjct: 112 LVEEGNIGLLKAVEKFDYTKGFKFSTYATWWIRQAIERAIINQCRMVRIPVHMSENISKV 171 Query: 464 NRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFI 523 + ++ Q++GREPT EL+ MP ++KV K+ S++ P+G DE S L +FI Sbjct: 172 MKTQNELQQKLGREPTIHELSTACKMPLSTLKKVFDAIKQDTSLDMPVGGDESSTLHEFI 231 Query: 524 EDTTLEL-PLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDV 582 D L P S + L L+ E ++ R+G+ N TLE +G + Sbjct: 232 ADDEKYLDPYLKIENTSKKEIIFKWLTFLSDNEKTIIIRRYGLTGNDPETLESIGNDLGI 291 Query: 583 TRERIRQIEAKALRKLRH 600 TRER+RQIE + L K+R+ Sbjct: 292 TRERVRQIEKRVLSKMRN 309 >UniRef50_Q9KHE4 RNA polymerase sigma factor n=14 Tax=Cyanobacteria RepID=Q9KHE4_ANASP Length = 390 Score = 217 bits (553), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 109/242 (45%), Positives = 169/242 (69%), Gaps = 1/242 (0%) Query: 371 KARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY 430 + R AK++M+ +NLRLV+SIAK+Y NRG+ FLDLIQEG +GL +A +KF+ +GYKFSTY Sbjct: 148 QGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTY 207 Query: 431 ATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMP 490 A WWIRQAITR+IA+ ARTIR+P+H++E +NKL + R++ Q+ R P+ E+AE + + Sbjct: 208 AYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKFSRNPSEAEMAEALEIS 267 Query: 491 EDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAG 550 ++R++ ++ ++ +S+ +G +ED+ L D +ED P +R +VL Sbjct: 268 VPQLRQLQQLRRQALSLNHRVGKEEDTELMDLLEDEDNLSPEAKMNENMMRQEIWEVLGD 327 Query: 551 -LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRS 609 LT RE V+ +R+G+ + TLEEVG F+++RER+RQI++KA+RKLR P ++ L+ Sbjct: 328 VLTPREKDVISLRYGLTTSEPCTLEEVGNMFNLSRERVRQIQSKAMRKLRRPHIAKRLKG 387 Query: 610 FL 611 +L Sbjct: 388 WL 389 >UniRef50_A8RNE4 RNA polymerase sigma factor n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RNE4_9CLOT Length = 298 Score = 217 bits (552), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 115/239 (48%), Positives = 160/239 (66%), Gaps = 5/239 (2%) Query: 375 AKKEMVEANLRLVISIAKKYTN--RGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT 432 A+++M+ +NLRLVI+ AKKY + L LDLIQEGN+GL+KAV+K+ G++FSTYA+ Sbjct: 61 ARQKMISSNLRLVINQAKKYVTYTQSLTLLDLIQEGNLGLIKAVEKYNPELGFRFSTYAS 120 Query: 433 WWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPED 492 WWI+QAITR+I+ + IR+PVH E I K+ R + +++Q+ TPE+L + E Sbjct: 121 WWIKQAITRAISVLDKAIRLPVHFCEDIQKVKRATHEIMQQ-NDIVTPEKLKDITGFSEG 179 Query: 493 KIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLT 552 KI K+L IS+ETP+G E++ LGDF+EDT + A +++ + L Sbjct: 180 KIEKILMNMNHTISLETPVG--EEATLGDFVEDTLTPSIEEQAMENAMQREISRQMECLR 237 Query: 553 AREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 RE +L +RFG++ +TLEEVGKQ VTRERIRQIE KALRKLRHP+RS LR F+ Sbjct: 238 PREQTILALRFGLNGQNPHTLEEVGKQMGVTRERIRQIEMKALRKLRHPNRSRYLREFI 296 >UniRef50_Q4A5V6 RNA polymerase sigma factor n=3 Tax=Mycoplasma RepID=Q4A5V6_MYCS5 Length = 798 Score = 217 bits (552), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 116/277 (41%), Positives = 175/277 (63%), Gaps = 18/277 (6%) Query: 353 LTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL 412 LT ++ KD+ M G ++ +RA+ +++ NLRLV++ AKKY NRGL F+DL+ EGN GL Sbjct: 516 LTPQEEKDLAEEMDKGGSRGKRARDLIIKRNLRLVVNAAKKYKNRGLSFIDLVSEGNAGL 575 Query: 413 MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQ 472 +KA KF+ ++G+KFSTYATWWIRQ+I+R++ADQAR IR+PVHM+ETINK+ +I R++ Q Sbjct: 576 LKAAQKFDIKKGFKFSTYATWWIRQSISRAVADQARIIRVPVHMVETINKIYKIEREIQQ 635 Query: 473 EMGREPTPEELAERMLMPEDK-----IRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 527 E G E EE+A R+ K IR + KI PIS++ +G + DS GDF++D + Sbjct: 636 ENGGEIIDEEIAARLGGKSKKYDASYIRYIRKINTSPISLDKQVGKENDSFFGDFVKDES 695 Query: 528 LELPLDSATTESL-RAATHDVLAGLTAREAKVLRMRFGIDMNT------DYTLEEVGKQF 580 + P++ A E L + V L+ EA +++ GI + TL+E+ K F Sbjct: 696 IISPVEFADKEELITKINYYVEKLLSEAEADLIKRYHGIGYDAKGNPVRSATLDEISKDF 755 Query: 581 -----DVTRERIRQIEAKALRKLR-HPSRSEVLRSFL 611 +++ER+RQI K +KLR +P E+ +F+ Sbjct: 756 RGEGKKISKERVRQIITKIYKKLRGYPEVVELFENFI 792 >UniRef50_A6G031 RNA polymerase sigma factor n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G031_9DELT Length = 431 Score = 216 bits (551), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 103/230 (44%), Positives = 161/230 (70%), Gaps = 1/230 (0%) Query: 371 KARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY 430 K R AK + V+ANLRLV+SIA+++ + + DLIQEGNIGLMKAVD+F+YR+G++FSTY Sbjct: 193 KLRSAKNKFVKANLRLVVSIARRFNHGRMPLQDLIQEGNIGLMKAVDRFDYRKGFRFSTY 252 Query: 431 ATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMP 490 +WWIR AI+R+IAD+ R +R+PVHMI+ +K+N+ R++ ++GREPT EELA+ + Sbjct: 253 GSWWIRHAISRAIADKGRQVRLPVHMIDAYHKVNKARRELEAKLGREPTREELAQHTGIA 312 Query: 491 EDKIRKV-LKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLA 549 KI ++ + PIS++ P+ D + +GDF+ED E P + ++L +++ Sbjct: 313 LAKIERMGTMLVDNPISLDKPVSDADGRKMGDFLEDENAEDPGEGLEADALNEQVKRLVS 372 Query: 550 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLR 599 L EA ++R RFG+ + + TL+E+G Q+ ++RERIRQ++ +AL K+R Sbjct: 373 KLRPIEADIIRKRFGLIDDEELTLKEIGGQYSLSRERIRQLQEQALGKIR 422 >UniRef50_D1CDN0 RNA polymerase sigma factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CDN0_THET1 Length = 344 Score = 215 bits (548), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 106/259 (40%), Positives = 169/259 (65%), Gaps = 4/259 (1%) Query: 353 LTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL 412 ++ E++ D+ + + G+A A+ +++E NLRLV+SIA++Y G+ DLI+EGN+GL Sbjct: 89 ISPEELDDLKKAVEEGKA----ARHKLIEHNLRLVVSIARRYVGHGMPLADLIEEGNLGL 144 Query: 413 MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQ 472 M+A +KF++RRG++FSTYATWWIRQA+TR +A+ RTIR+PVH+ E + K+ R ++++ Sbjct: 145 MRAAEKFDWRRGFRFSTYATWWIRQAVTRGLAEGGRTIRLPVHVGEALTKIGRETQRLSL 204 Query: 473 EMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPL 532 E+GREPT +ELAE + ++I + ++ P+S+E P+G+D +++LG+ +EDT P Sbjct: 205 ELGREPTNQELAEATGLSPERIDEYKNASRLPLSLEAPLGEDGETNLGEVLEDTEAANPE 264 Query: 533 DSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEA 592 A L L L R+ ++ MR+G+ TLE G++ VTRER RQIE Sbjct: 265 HIADHTMLGEDIKRALERLNERQRAIIIMRYGLYGGQPMTLEAAGRKLGVTRERARQIEQ 324 Query: 593 KALRKLRHPSRSEVLRSFL 611 +AL +LR + L S + Sbjct: 325 EALNRLRQSDAKQFLASHV 343 >UniRef50_A9ESS1 RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9ESS1_SORC5 Length = 715 Score = 215 bits (547), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 103/227 (45%), Positives = 158/227 (69%), Gaps = 3/227 (1%) Query: 375 AKKEMVEANLRLVISIAKKYTNRG-LQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW 433 AK V+ANLRLV+SIA++Y NRG L +DLIQEGNIGLMKAV++F++ RGY+FSTYA+W Sbjct: 484 AKNRFVKANLRLVVSIARRY-NRGRLPLIDLIQEGNIGLMKAVERFDHSRGYRFSTYASW 542 Query: 434 WIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDK 493 WIR AI+R++AD+ R +RIPVHM++T N++ R ++ ++ G EPT EEL + +P +K Sbjct: 543 WIRHAISRALADKGRAVRIPVHMLDTYNRVARATQAIIARTGHEPTIEELEKETGVPREK 602 Query: 494 IRKVLKI-AKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLT 552 + KV A+ P S++ P+GD++ DF+++ P D +L LT Sbjct: 603 LDKVKDFYAETPFSLDRPVGDEDGRKFIDFLQEENALSPFDHLANRKWSDEVRRLLTTLT 662 Query: 553 AREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLR 599 E++++R RFG+D + TL+E+G +++++RERIRQ++ +AL K+R Sbjct: 663 PIESRIIRWRFGLDDEDELTLKEIGDKYNLSRERIRQLQEQALGKIR 709 >UniRef50_Q31QR8 RNA polymerase sigma factor rpoD4 n=59 Tax=Cyanobacteria RepID=RPOD4_SYNE7 Length = 311 Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 105/229 (45%), Positives = 159/229 (69%), Gaps = 1/229 (0%) Query: 372 ARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYA 431 +RAK +M++ANLRLV+S+AKKY N+GL+ LDLIQEG++GL +AV+KF+ GYKFSTYA Sbjct: 71 GQRAKTKMLKANLRLVVSVAKKYQNQGLELLDLIQEGSLGLERAVEKFDPALGYKFSTYA 130 Query: 432 TWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPE 491 WWIRQ++TR+I + ARTIR+P+H+ E I+++ +++R++ ++ R P+ E+AE + +P Sbjct: 131 YWWIRQSMTRAIDNHARTIRLPIHVSEKISRIKKMTRELTHQLKRLPSRAEIAEALKLPL 190 Query: 492 DKIRKVLKIAKEPISMETPI-GDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAG 550 + +L + S++ GDD S LGD I D P+D+ LA Sbjct: 191 QDVEMLLSQSTPCTSLDAQARGDDGRSFLGDLIPDPKSLEPMDAMDRHIQHEQISTWLAH 250 Query: 551 LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLR 599 LT RE +VL++RFG+ +TL E+G++ +V+RERIRQ+EA+AL+KLR Sbjct: 251 LTEREQQVLQLRFGLHDGEQHTLAEIGRRLNVSRERIRQVEARALQKLR 299 >UniRef50_B8HIZ1 RNA polymerase sigma factor n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HIZ1_ARTCA Length = 951 Score = 212 bits (540), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 119/245 (48%), Positives = 152/245 (62%), Gaps = 2/245 (0%) Query: 370 AKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFST 429 + R A ++V NLRLV+SIAK++T RG+ FLDLIQEGN GL +AV KF+Y +G+KFST Sbjct: 523 SAGRDAVLKLVSCNLRLVVSIAKRHTGRGMDFLDLIQEGNAGLYRAVQKFDYTKGFKFST 582 Query: 430 YATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLM 489 YATWWIRQAITR IADQ+RTIR+PVH E + + R LQ GR+ T EE+AE Sbjct: 583 YATWWIRQAITRGIADQSRTIRLPVHFHEQVVSVFIAERNFLQSEGRDGTAEEIAEACGK 642 Query: 490 PEDKIRKVLKIAKEPISM--ETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDV 547 D+I V + P S+ E P G LG+ + D D+A L++A H Sbjct: 643 TVDEINAVRRHRTPPASLDWEVPNGKGGVELLGETLYDPDEPTAYDAAVLAQLQSAVHGA 702 Query: 548 LAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVL 607 L L+ REA VL RFG+ TL+++G + VTRERIRQIEAKA LR P+ + L Sbjct: 703 LDRLSEREAGVLAYRFGLATGEQLTLDQIGTIYGVTRERIRQIEAKAFAALREPAAAAQL 762 Query: 608 RSFLD 612 R F D Sbjct: 763 RDFFD 767 >UniRef50_A9G730 RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G730_SORC5 Length = 463 Score = 212 bits (539), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 105/232 (45%), Positives = 152/232 (65%), Gaps = 1/232 (0%) Query: 380 VEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAI 439 V ANLRLV + A++ +RG+ LDLIQEGN+GL++A +KF+YRRGY+FSTYA WWI+QA+ Sbjct: 231 VRANLRLVAAAARQLRHRGVPLLDLIQEGNLGLIRAAEKFDYRRGYRFSTYAMWWIKQAL 290 Query: 440 TRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLK 499 +R++ Q + IR+PVH+ ET + + R++ QE RE PEE+AER + +K++ + + Sbjct: 291 SRALLYQGQVIRVPVHIAETRRRALQARRELEQEHAREAAPEEVAERSGLSMEKLQALRE 350 Query: 500 IAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVL 559 +A P+ ++ P+GDD+ + GDF P + L A +L LT RE VL Sbjct: 351 MALPPVYLDAPVGDDDGARQGDFFASEG-AAPDELLVHRRLHAQVSALLESLTPRERDVL 409 Query: 560 RMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 R+RFG+D +TL E+G F V+RER+RQIE AL KLR SR + L + L Sbjct: 410 RLRFGLDGGQPHTLAEIGGMFSVSRERVRQIEESALSKLRTLSRRQALETPL 461 >UniRef50_Q8S9C9 RNA polymerase sigma factor n=1 Tax=Cyanophora paradoxa RepID=Q8S9C9_CYAPA Length = 431 Score = 211 bits (538), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 117/246 (47%), Positives = 160/246 (65%), Gaps = 8/246 (3%) Query: 375 AKKEMVEANLRLVISIAKKY-TNRG-LQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT 432 A+ +V ANLR V+++AKKY RG + DLIQEGNIGL++AV+KF+ R GY+F+TYAT Sbjct: 187 ARDRLVRANLRWVVAVAKKYHKQRGTMSMQDLIQEGNIGLIRAVEKFDPRMGYRFTTYAT 246 Query: 433 WWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPED 492 WWIRQAITRSI + +R IR+P H E IN++ R + + + +GR+PT E+AE + + Sbjct: 247 WWIRQAITRSIQNSSREIRLPAHRHEKINRIKRATVALSRSLGRQPTEAEIAEHVGLDPS 306 Query: 493 KIRKVLKIAK--EPISMETPI--GDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVL 548 ++RK ++ A +S++ PI D++ + +GDFI E P D A E +R + L Sbjct: 307 RMRKFVESAAAVATVSLDVPINESDNQSATIGDFIRSEN-EGPADRAERELMRESVARTL 365 Query: 549 A-GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVL 607 A L+ RE VLRMRFG+D TL +VG+ VTRER+RQIE KALRKLR P S L Sbjct: 366 AKALSEREYMVLRMRFGLDDGEPKTLNQVGETLGVTRERVRQIEMKALRKLRRPGFSSAL 425 Query: 608 RSFLDD 613 R D Sbjct: 426 RDLSSD 431 >UniRef50_Q9KI19 RNA polymerase sigma factor rpoS n=6 Tax=Coxiella burnetii RepID=RPOS_COXBU Length = 352 Score = 211 bits (537), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 109/240 (45%), Positives = 158/240 (65%), Gaps = 3/240 (1%) Query: 361 INRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE 420 I RR+ G+ KAR K+M+EANLRLV+ IA+ Y NRGL FLDLI+EGN+GL+ AV+KF+ Sbjct: 102 IARRVHKGDPKAR---KQMIEANLRLVVKIARHYVNRGLPFLDLIEEGNLGLLTAVEKFD 158 Query: 421 YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTP 480 RG++FSTYATWWIRQ I R+I +Q+RT+R+P+H+I+ +N R ++++ QE+ E TP Sbjct: 159 PERGFRFSTYATWWIRQTIERAIMNQSRTVRLPIHVIKELNVYLRTAKKLTQEVDHEATP 218 Query: 481 EELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESL 540 E++A + P +IR+++ +A S++ PI +D L D + D P L Sbjct: 219 EDVAHLIDKPVQEIRRIMDLAPSATSIDVPISEDGQKSLVDTLADDNNIDPARLIQNVDL 278 Query: 541 RAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 600 + LA L R +V+ +RFG+ N TLE VGK +TRER+RQI+ AL++LRH Sbjct: 279 QDHIERWLAQLDERHREVVILRFGLHENEKGTLEAVGKAVGLTRERVRQIQIDALQQLRH 338 >UniRef50_P18184 RNA polymerase principal sigma factor hrdC n=5 Tax=Actinomycetales RepID=HRDC_STRCO Length = 339 Score = 211 bits (537), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 108/262 (41%), Positives = 170/262 (64%), Gaps = 2/262 (0%) Query: 348 EEETGLTIEQVKDINRRMSIGEA--KARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLI 405 E ET T E RR ++ E + AK MV ANLRLV+S+AK++ +RGL LD+I Sbjct: 73 ELETADTGEPAPTPRRRRTLEETVHDGQEAKDHMVRANLRLVVSMAKRHAHRGLPLLDVI 132 Query: 406 QEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNR 465 QEGN+GL++AV+KF++ +G+KFSTYATWWIRQAI R +A ART+R+PVH++E + KL + Sbjct: 133 QEGNLGLIRAVEKFDHTKGFKFSTYATWWIRQAIERGLATHARTVRLPVHVVEQLQKLAK 192 Query: 466 ISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIED 525 + R++ + REPT EE+A + DK+ + ++ ++ +S++TP+ + D+ +GD I D Sbjct: 193 VERKLRAGLDREPTTEEVAAESGIDVDKVVWLRRVGRDAVSLDTPVDETGDTVVGDLIPD 252 Query: 526 TTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRE 585 T + + A ++L A + + L RE+ +L +R+G+ TL++V + +TRE Sbjct: 253 TEVLRAPEVAEFQALAAELREAVGTLAPRESLILSLRYGLHDGRPRTLQQVAQHVGLTRE 312 Query: 586 RIRQIEAKALRKLRHPSRSEVL 607 R+RQ+E ++L LR P E L Sbjct: 313 RVRQLEKESLAHLRAPENRERL 334 >UniRef50_A9B1P1 RNA polymerase sigma factor n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B1P1_HERA2 Length = 303 Score = 211 bits (537), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 109/225 (48%), Positives = 152/225 (67%) Query: 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 434 A +++V ANLRLV+SIAK+Y GL F DLIQEGNIGLM A+++F+ +G +FSTYATWW Sbjct: 74 AHEQLVRANLRLVVSIAKRYRGFGLPFQDLIQEGNIGLMNAIERFDATKGVRFSTYATWW 133 Query: 435 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKI 494 IRQAITRS+A+Q R IR+PVH E + K+ RI ++LQ +GREP+ E++ + +PE+KI Sbjct: 134 IRQAITRSLANQGRLIRLPVHRWELLIKVRRIETKLLQALGREPSANEISTALGVPEEKI 193 Query: 495 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAR 554 +L IA+ PIS+ TP ++ D LGD + D E L+ T T +L L+ + Sbjct: 194 CDLLSIAQVPISLATPKNEETDMLLGDSLPDEDWEDELECLLTSIDAQYTRAMLNQLSEQ 253 Query: 555 EAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLR 599 E +VL +R+G+ +L EVG TR+RI+QIEA AL+ LR Sbjct: 254 EQEVLTLRYGLKDGKSRSLSEVGAVVGRTRQRIQQIEAGALQVLR 298 >UniRef50_Q03065 RNA polymerase sigma-B factor n=68 Tax=cellular organisms RepID=RPSB_ANASP Length = 332 Score = 211 bits (536), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 104/239 (43%), Positives = 163/239 (68%), Gaps = 3/239 (1%) Query: 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 434 AK++M++ANLRLV+SIAKKY R L+FLDLIQEG +GL + V+KF+ GYKFSTYA WW Sbjct: 97 AKQKMIQANLRLVVSIAKKYQKRNLEFLDLIQEGALGLERGVEKFDPTLGYKFSTYAYWW 156 Query: 435 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKI 494 IRQ ITR+IA Q+RTIR+P+HM + +NK+ + R++ Q++G E+A+ + + +I Sbjct: 157 IRQGITRAIAQQSRTIRLPIHMADKLNKIKCVQRELSQKLGYIAGVTEIAQALNLEPSQI 216 Query: 495 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAR 554 R+ L++ ++P+S++ IG ++D+ L D ++D + P A E L H++LA LT + Sbjct: 217 REYLQLVRQPVSLDMRIGFEQDTQLQDLLKDDGMS-PERYAERELLYQDIHNLLAKLTPQ 275 Query: 555 EAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 + +VL +RFG+ + TL ++ ++ ++RER+RQ+E +AL LR RS+L D Sbjct: 276 QKEVLILRFGLAGGCELTLVQISQRMGISRERVRQVEKQALTLLRRYGIDS--RSYLAD 332 >UniRef50_Q1ASS7 RNA polymerase sigma factor n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1ASS7_RUBXD Length = 282 Score = 210 bits (535), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 111/273 (40%), Positives = 169/273 (61%), Gaps = 4/273 (1%) Query: 342 QKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQF 401 Q L +I E LT + +++RR G+ ARR ++E+NLRLV++IAK+Y RG+ F Sbjct: 11 QYLGRIREGRLLTAGEEVELSRRARAGDGAARR---RLIESNLRLVVAIAKRYRGRGVPF 67 Query: 402 LDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETIN 461 DLIQEGN GL++AV+KF+ G +FSTYATWWIRQA+TR++ADQ R +R+P H+++++ Sbjct: 68 EDLIQEGNAGLIRAVEKFDPEMGNRFSTYATWWIRQAVTRAVADQGRAVRLPAHVVDSVY 127 Query: 462 KLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDED-SHLG 520 +L R + E+GREPT EE+A R+ ++ R++ ++++ S+ +GD+ED + LG Sbjct: 128 RLRRAESALSVELGREPTDEEVAGRLGTSPEEARRLREVSQPISSISARLGDEEDGAELG 187 Query: 521 DFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQF 580 D + D R + + L REA+VLR+R G+D TL EV + Sbjct: 188 DLLPDEAASEEYARVEAGPWRGVLREAVGSLPEREARVLRLRHGLDGERARTLREVSEIL 247 Query: 581 DVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 +++ER RQ+E KALR LR + LR L + Sbjct: 248 GISQERARQVELKALRTLRSGRYAGSLRRGLSE 280 >UniRef50_D1A523 RNA polymerase sigma factor n=3 Tax=Actinomycetales RepID=D1A523_THECD Length = 360 Score = 210 bits (534), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 103/227 (45%), Positives = 152/227 (66%) Query: 374 RAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW 433 RAK+ VEANLRLV+SIA+KY L +DLIQEGN+GLM+AV+KF+YRRG+KFSTYATW Sbjct: 77 RAKQRFVEANLRLVVSIARKYPTDALPLIDLIQEGNLGLMRAVEKFDYRRGFKFSTYATW 136 Query: 434 WIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDK 493 WIRQ+I R ++ ARTIR+PVH+ E +++L R RQ+ +E+GREPT EELAE + D Sbjct: 137 WIRQSIGRGLSHTARTIRLPVHVEEELSRLRRAERQLGRELGREPTREELAEALGAAVDH 196 Query: 494 IRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTA 553 + ++L+ ++P S++ + D ++ +GD +ED P A +L L Sbjct: 197 VDELLRWRRDPASLDAAVDDAGETPMGDLLEDPEGVSPEAEVLALDDIAGLARLLDRLPE 256 Query: 554 REAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 600 RE+ +LR RFGI+ + ++G ++ ++ R+RQI ++LR+LR Sbjct: 257 RESAILRARFGIEDGQPLSYAQIGARYGLSHNRVRQITDRSLRRLRQ 303 >UniRef50_D1N7J7 RNA polymerase sigma factor n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7J7_9BACT Length = 428 Score = 209 bits (533), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 107/267 (40%), Positives = 174/267 (65%), Gaps = 1/267 (0%) Query: 342 QKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQF 401 Q+ + +E+ +T E++ R++ + + +++M+EANLRLVISIA+KY NRGL F Sbjct: 153 QRRKLLEDRFLMTYEELTGEIRKLLEIHEELQNLRQKMIEANLRLVISIAQKYRNRGLPF 212 Query: 402 LDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETIN 461 DLIQEGN+GL++A++KF++R G KFSTYA+WWI+ I+RSIA+Q+R IRIP HM+ IN Sbjct: 213 NDLIQEGNLGLLRALEKFDFRLGNKFSTYASWWIKHNISRSIAEQSRVIRIPAHMVHAIN 272 Query: 462 KLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDED-SHLG 520 + ++ +Q GREP +ELA + MP +I + K++ + IS++ P+ ED + L Sbjct: 273 SMTWAEQRFIQSHGREPEIDELAAVLEMPVARISAIRKMSCQTISLQAPVSSSEDGAMLE 332 Query: 521 DFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQF 580 D I D + P+ + L +++L L R+ +++ +RFG+ L ++ ++F Sbjct: 333 DLIADDSTANPVRDFARKILYDKLYEMLRTLPERDQQIIILRFGLFGQPCLPLVDISRRF 392 Query: 581 DVTRERIRQIEAKALRKLRHPSRSEVL 607 ++TRERIRQ+EAK + LR P++ + L Sbjct: 393 NLTRERIRQLEAKIIENLRSPAKLKYL 419 >UniRef50_B9ZQZ1 RNA polymerase sigma factor n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZQZ1_9GAMM Length = 359 Score = 209 bits (533), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 112/256 (43%), Positives = 161/256 (62%), Gaps = 3/256 (1%) Query: 344 LQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLD 403 L+ IE LT E+ + R G+ RR M+E NLRLV+ IA++Y NRGL LD Sbjct: 90 LRDIEYRPLLTPEEERKYARLARDGDESGRR---RMIECNLRLVVKIARRYLNRGLPLLD 146 Query: 404 LIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKL 463 LI+EGN+GLM AV+KF+ RG++FSTYATWWIRQ I R++ +Q RTIRIPVH+ + + Sbjct: 147 LIEEGNLGLMHAVEKFDPERGFRFSTYATWWIRQTIERALMNQGRTIRIPVHVSKELRMH 206 Query: 464 NRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFI 523 RI+R + QE+GR+PT EELA+R+ P I+K+ +++ SM+ P G D + L D + Sbjct: 207 ARIARNLTQELGRDPTEEELAQRLGKPVADIQKLRAMSEPSTSMDLPPGPDGERSLTDIL 266 Query: 524 EDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVT 583 D + P + ++ + L L ++ +VL RFG+ TLE+VG + VT Sbjct: 267 ADVNAQEPSSLLEDQDIQHLVDEWLGELDYKQREVLVRRFGLHGFERSTLEQVGAEIGVT 326 Query: 584 RERIRQIEAKALRKLR 599 RER+RQI+ AL++LR Sbjct: 327 RERVRQIQMDALKRLR 342 >UniRef50_P35540 RNA polymerase sigma factor rpoS n=502 Tax=Proteobacteria RepID=RPOS_SHIFL Length = 330 Score = 208 bits (530), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 104/247 (42%), Positives = 165/247 (66%), Gaps = 3/247 (1%) Query: 353 LTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL 412 LT E+ RR G+ +RR M+E+NLRLV+ IA++Y NRGL LDLI+EGN+GL Sbjct: 71 LTAEEEVYFARRALRGDVASRR---RMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGL 127 Query: 413 MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQ 472 ++AV+KF+ RG++FSTYATWWIRQ I R+I +Q RTIR+P+H+++ +N R +R++ Sbjct: 128 IRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSH 187 Query: 473 EMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPL 532 ++ EP+ EE+AE++ P D + ++L++ + S++TP+G D + L D + D P Sbjct: 188 KLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPE 247 Query: 533 DSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEA 592 D+ + ++ + L L A++ +VL RFG+ TLE+VG++ +TRER+RQI+ Sbjct: 248 DTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQV 307 Query: 593 KALRKLR 599 + LR+LR Sbjct: 308 EGLRRLR 314 >UniRef50_A6DK04 RNA polymerase sigma factor n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DK04_9BACT Length = 404 Score = 208 bits (530), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 101/229 (44%), Positives = 153/229 (66%) Query: 379 MVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQA 438 MVE NLRLVISIA+KY+N FLDLIQEGNIGL+ AV+K++ GY FSTYATWWIRQA Sbjct: 172 MVEGNLRLVISIARKYSNSQEGFLDLIQEGNIGLVSAVEKYDASFGYTFSTYATWWIRQA 231 Query: 439 ITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVL 498 ++R+ + RT+++P +++ +NK+ R R++ Q+ GRE T +E++E + + KIR + Sbjct: 232 VSRARTELVRTMKLPANIMVKVNKIYRTERELFQKFGREATIDEVSEAVELSPAKIRSLK 291 Query: 499 KIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKV 558 ++ ++PIS++T + ++ LGD + + LP + L + +L L RE ++ Sbjct: 292 RMCQQPISLQTTVSEEHTGELGDIVSNDDDVLPDAEVEQKQLHESLVAMLDILNEREQEI 351 Query: 559 LRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVL 607 LRMRFG+ +TLE + +F ++RERIRQIE AL+KLR P+ + L Sbjct: 352 LRMRFGLADGEYHTLENIANEFGISRERIRQIETSALKKLRRPTAVKCL 400 >UniRef50_B7KCK0 RNA polymerase sigma factor n=2 Tax=Cyanothece RepID=B7KCK0_CYAP7 Length = 295 Score = 204 bits (519), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 96/227 (42%), Positives = 157/227 (69%), Gaps = 2/227 (0%) Query: 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 434 AK++M++ANLRLV+SIAK+Y RGL LDLIQEG++GL++AV+KF+ +GYKFSTYA WW Sbjct: 60 AKRKMIQANLRLVVSIAKRYQRRGLSLLDLIQEGSLGLIRAVEKFDPSKGYKFSTYAYWW 119 Query: 435 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKI 494 +RQAITR++A+++RTIR+P+HM E +N+L + R++ E+GR+P +E+A+RM +P +K+ Sbjct: 120 VRQAITRALAEKSRTIRLPIHMTENLNQLKKSVRELTGELGRKPNEQEVAQRMEIPVEKL 179 Query: 495 RKVLKIAKEPISMETPIG-DDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTA 553 R++ + I DD + LG+ + D T LP++ + L +D+L L Sbjct: 180 REIRHAVYRTDAKSLNITLDDNQTELGEVLPDET-SLPIEFVSQWELVTKINDLLEDLPP 238 Query: 554 REAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 600 R+ +++ +RFG+ + +E+G+Q ++ ER RQ+ +A+R L+ Sbjct: 239 RQREIITLRFGLQTGKRMSYKEIGRQCGISHERARQLLNRAMRTLKQ 285 >UniRef50_D1C9N7 RNA polymerase sigma factor n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C9N7_SPHTD Length = 359 Score = 203 bits (517), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 102/230 (44%), Positives = 154/230 (66%) Query: 371 KARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY 430 +A+ A+++++ NLRLV+SIAKKY GL +DLIQEGNIGLM AV++++ GY+FSTY Sbjct: 120 RAKAAREKLIRHNLRLVVSIAKKYRTSGLPLIDLIQEGNIGLMTAVERYDPELGYRFSTY 179 Query: 431 ATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMP 490 AT+WIRQAI R++A+Q+RTIR+PVHM + I+K+ R Q+ Q GR T +ELA+ + + Sbjct: 180 ATFWIRQAIGRAVANQSRTIRVPVHMHDLISKVRRTEAQLEQLHGRPATDQELAQALDLD 239 Query: 491 EDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAG 550 ++I + S++ PIG+D +S +GD + D + +D A T ++R L Sbjct: 240 VERIEQARSAIPRTSSLDKPIGEDGESTIGDLLPDPASDEVVDQAVTSAIRDQIRRSLES 299 Query: 551 LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 600 L+ RE VL +RFG+ TL E+ + + ++RER+RQIE +AL KLR+ Sbjct: 300 LSERERGVLTLRFGLGGQQPQTLAEIAEYYGISRERVRQIEKEALAKLRN 349 >UniRef50_Q5UEI3 RpoD (Fragment) n=23 Tax=Vibrio RepID=Q5UEI3_9VIBR Length = 176 Score = 203 bits (516), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 101/174 (58%), Positives = 124/174 (71%) Query: 212 IDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVN 271 IDPELA EKF LR Y + I G A + +VFK+FRL PKQFDYLVN Sbjct: 3 IDPELALEKFTALRTSYQNRQLAINEYGHESPKAMLATTMMQDVFKEFRLTPKQFDYLVN 62 Query: 272 SMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLH 331 +R MDRVRTQERLIM+ VE KMPKK+FI LFTGNE+S+ W + +A +KP++EK+ Sbjct: 63 ELRNSMDRVRTQERLIMRQTVEYGKMPKKSFIALFTGNESSEAWLDEVLASDKPYAEKIK 122 Query: 332 DVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLR 385 ++ R++QKL IE ET LT++ +KDI+RRMSIGEAKARRAKKEMVEANLR Sbjct: 123 RNEHDIRRSIQKLDMIERETSLTVQSIKDISRRMSIGEAKARRAKKEMVEANLR 176 >UniRef50_Q56VT3 RNA polymerase sigma factor (Fragment) n=1 Tax=Hydrogenothermus marinus RepID=Q56VT3_9AQUI Length = 369 Score = 202 bits (515), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 105/215 (48%), Positives = 135/215 (62%) Query: 221 FAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRV 280 FA++R Y + G + Q+ ++ R + + + + +R +++V Sbjct: 154 FAKIREWYQALDAALTQGGTQNPEYQKLRDLIAHELLHIRFTARYIEQVCDIVRGFIEQV 213 Query: 281 RTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRA 340 R ER I LC + MP+ +F+ F NET+ W I PWSE L V V Sbjct: 214 RQHERQIQNLCTQIGTMPRDHFLKTFPPNETNLDWIKNEIEAGHPWSESLVRVFPSVLDE 273 Query: 341 LQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQ 400 Q++ +I E + ++++KDI +RMS GEAK R AK+EMVEANLRLVISIAKKYTNRGLQ Sbjct: 274 QQRIIEIVERARVPLDELKDIFKRMSQGEAKMRAAKREMVEANLRLVISIAKKYTNRGLQ 333 Query: 401 FLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 435 FLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI Sbjct: 334 FLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 368 >UniRef50_Q21TX3 RNA polymerase sigma factor n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21TX3_RHOFD Length = 726 Score = 202 bits (515), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 108/237 (45%), Positives = 154/237 (64%), Gaps = 6/237 (2%) Query: 373 RRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT 432 R+A+ +MV ANL+LV+ IAKKY G DL+QEGNIGL+KAVD++++RRG+K STYAT Sbjct: 369 RQARDQMVIANLKLVLFIAKKYLYSGQPLDDLLQEGNIGLIKAVDRYDWRRGFKLSTYAT 428 Query: 433 WWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPED 492 WWIRQ + R +AD+++TIR+PVH+ ++ + + GR PT EE+A++M MP Sbjct: 429 WWIRQQVGRYVADKSKTIRLPVHVYVKTQQIAHAAHAIELATGRMPTIEEIAKKMEMPAS 488 Query: 493 KIRKVLKIAKEPISMETPIGD-DEDSHLG-DFIEDTTLELPLDSATTESLRAATHDVLAG 550 K+ + EP+ PI D D DS + D ++ P+D + L + LA Sbjct: 489 KVAPLALAIPEPL----PIHDVDVDSLIAIDAQDNYVARDPMDIVSDSQLIGSIDRFLAT 544 Query: 551 LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVL 607 L ++ +VLR+RFGI + TLEE+G + +VTRERIRQIEAKA+ L+HP+R E L Sbjct: 545 LKPKDEQVLRLRFGIGAHEAMTLEEIGTRLEVTRERIRQIEAKAICHLKHPARLERL 601 Score = 48.1 bits (113), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 82/170 (48%), Gaps = 21/170 (12%) Query: 47 MINDMGIQVMEE----APDA--DDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRM 100 +IND+G + + PD + ++ E T DE+ + + L+ +++ R DP+R+ Sbjct: 133 VINDVGAETDDRFEYCTPDESFEVVVAPEMTPDEE--DTVTEALAFIDNLAERRNDPLRI 190 Query: 101 YMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSD 160 Y +E LLT + E+ + + +E G+ Q ++A +P I +L+ V++E L Sbjct: 191 YQKEFQNATLLTADEEVALGQGMERGVQQALDALAVWPSGIGAVLDAVHMVKSEAKPLRW 250 Query: 161 LITGFVDPNAE-------EDLAPTATHVGSELSQEDLDDDEDEDEEDGDD 203 L +G P AE + P A V LS E + D++ D + G D Sbjct: 251 LSSG---PRAELQDIEISSNAEPAADSV---LSVEGIGTDDESDSQFGHD 294 >UniRef50_Q1AV06 RNA polymerase sigma factor n=3 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AV06_RUBXD Length = 304 Score = 202 bits (514), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 109/252 (43%), Positives = 160/252 (63%), Gaps = 4/252 (1%) Query: 360 DINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF 419 +++RR G+ R+A+++++E NLRLV+S+AKKY GL F DLIQEGNIGLMKAV+KF Sbjct: 55 ELSRRAKKGD---RKARQKLIEKNLRLVVSVAKKYRGYGLPFEDLIQEGNIGLMKAVEKF 111 Query: 420 EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPT 479 + RG++FSTYATWWIRQA+ R++AD+ RTIR+PVHM E I K++R ++ E+ REPT Sbjct: 112 DPERGFRFSTYATWWIRQAVQRAVADKGRTIRVPVHMTEKIRKVSRTFNELSLELEREPT 171 Query: 480 PEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDED-SHLGDFIEDTTLELPLDSATTE 538 EE+A R+ + +R + + S++ P+ +E S LGDFIED D+ E Sbjct: 172 DEEIARRLEWDVEDVRLTISAMPDATSLDQPVSSEESASELGDFIEDERTSDTPDTVLKE 231 Query: 539 SLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKL 598 + + + L R VL R+G+D TL E+G + ++RER+RQ++ +A R L Sbjct: 232 LESSQLKEAIERLPERARYVLVRRYGLDDREPATLAELGDELKISRERVRQLQREAERLL 291 Query: 599 RHPSRSEVLRSF 610 + R RS Sbjct: 292 KAGIRRTSPRSI 303 >UniRef50_D0L243 RNA polymerase sigma factor n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L243_HALNC Length = 343 Score = 201 bits (511), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 106/266 (39%), Positives = 166/266 (62%), Gaps = 3/266 (1%) Query: 334 SEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKK 393 SE V L+ +E E LT E+ +RR G+ AR ++M+ NLRLVI IA++ Sbjct: 65 SESVDPVRLYLRDVETERLLTAEEEVIYSRRAQSGDESAR---QKMIVCNLRLVIKIARR 121 Query: 394 YTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIP 453 Y NRGL LDLI+EGNIGLM+AV+KF+ RG++FSTYATWWIRQ I R + +Q+RT+R+P Sbjct: 122 YMNRGLDLLDLIEEGNIGLMRAVEKFDPERGFRFSTYATWWIRQTIERGLMNQSRTVRLP 181 Query: 454 VHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGD 513 VH+++ ++ NR +R++ Q E T E++A+ + P +++ K++ + S ++P+ Sbjct: 182 VHVVKEVHTFNRAARKIAQNQNAEVTAEQIADHLDRPVNEVLKIMAFNERQSSFDSPLKG 241 Query: 514 DEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTL 573 D + L D I D P + + ++A L +++ +VL R+G+ +TL Sbjct: 242 DGEFSLLDLIPDQESNQPDELLQDAGVHGFLDQLIAQLESKQREVLVRRYGLRGYETHTL 301 Query: 574 EEVGKQFDVTRERIRQIEAKALRKLR 599 EEVG VTRER+RQI+ +A+R+L+ Sbjct: 302 EEVGNHLGVTRERVRQIQLEAVRRLK 327 >UniRef50_B1K0Z2 RNA polymerase sigma factor n=2 Tax=Burkholderiales RepID=B1K0Z2_BURCC Length = 857 Score = 200 bits (509), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 106/233 (45%), Positives = 149/233 (63%), Gaps = 10/233 (4%) Query: 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 434 A++ M ANL+LV +AKKY G DL QEGNIGL+KAV++F++RRG+KFSTYATWW Sbjct: 515 ARERMAVANLKLVFHLAKKYRYSGEPLDDLAQEGNIGLLKAVERFDWRRGFKFSTYATWW 574 Query: 435 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKI 494 IRQ I R +AD+ RT+R+PVH+ E +L+R ++ + E GR P E+A R+ M K+ Sbjct: 575 IRQQIGRHLADKCRTVRVPVHVHEKAQRLSRETQALESETGRAPELHEIAARLNMAVQKV 634 Query: 495 RKVLKIAKEPISM-ETPIGDDEDSHL---GDFIEDTTLELPLDSATTESLRAATHDVLAG 550 ++ ++A EP+ + E PI DE + DF+ P+D + L +L+ Sbjct: 635 AELQRLAPEPLPIHELPI--DELIAVEVRSDFVSPD----PMDIVSKSELLETIDKLLST 688 Query: 551 LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 603 L +E + LR+RFGI + TLEE+G Q+ VTRER+RQIE ALR L+HP R Sbjct: 689 LKPKEEQTLRLRFGIGVEEALTLEEIGCQYGVTRERVRQIEVAALRNLKHPRR 741 >UniRef50_C5J5B5 DNA-directed RNA polymerase subunit D (Fragment) n=4 Tax=uncultured gamma proteobacterium RepID=C5J5B5_9GAMM Length = 266 Score = 200 bits (509), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 119/281 (42%), Positives = 170/281 (60%), Gaps = 16/281 (5%) Query: 107 TVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFV 166 TVELLTREGEI IAKRIEDG+NQV+ ++ +P LL Y+ V E RL D+ITGF+ Sbjct: 1 TVELLTREGEIRIAKRIEDGLNQVRGALGVFPGTYGALLGIYEPVSRGEGRLQDIITGFI 60 Query: 167 DPNAEEDLA-PTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELR 225 DPN +++A P A + S +D DDD+DE + G D P+ ++F + Sbjct: 61 DPNMPDEIAQPNAKN-----SDDDDDDDDDEPVDTGPD----------PQEVIDRFTSIG 105 Query: 226 AQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQER 285 Y + +I+ G + +LS F + +L PK FD LV ++R + ++R ER Sbjct: 106 KLYAAIQQSIEKHGSQDEKTTKLRKQLSSEFMELKLAPKMFDLLVETLRGNIGKIRALER 165 Query: 286 LIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQ 345 +M+ C+ Q MP+K FI+ F NET+ W N I + S +L + +++ A +KL Sbjct: 166 QVMQFCIRQAGMPRKEFISSFPENETNLDWINKHIRAKRKHSSQLSKLRDDITCAQRKLI 225 Query: 346 QIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRL 386 +IE T L+I ++K+INR+MSIGEAKARRAKKEMV+ANLRL Sbjct: 226 EIEHSTSLSISEIKEINRQMSIGEAKARRAKKEMVDANLRL 266 >UniRef50_A8ZNW0 RNA polymerase sigma factor n=1 Tax=Acaryochloris marina MBIC11017 RepID=A8ZNW0_ACAM1 Length = 299 Score = 200 bits (508), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 98/232 (42%), Positives = 153/232 (65%), Gaps = 2/232 (0%) Query: 369 EAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS 428 + + +RAK M+ NLRLV++IAKKY RG+ +DLIQEG++GL +AV+KF+ +GY+FS Sbjct: 56 QKRGKRAKHRMICGNLRLVVTIAKKYQKRGMDLIDLIQEGSLGLERAVEKFDPAKGYRFS 115 Query: 429 TYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERML 488 TYA WWIRQ+ITR+IA Q+ TIRIPVHM E +N++ R+ R++ Q +GR PT +E+ + Sbjct: 116 TYAYWWIRQSITRAIAMQSHTIRIPVHMTEKLNRIKRVRRELSQTLGRTPTHQEMVAELG 175 Query: 489 MPEDKIRKVLKIAK--EPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHD 546 + ++++K L+ A+ P S+ +G D++ LGD +ED + P + + LR A Sbjct: 176 ITLEQLQKTLQAAQISNPESLNIRVGKDQEMELGDLLEDLQMPSPNEVVEQDFLRNALWS 235 Query: 547 VLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKL 598 LA L E VL +R+G++ + +L V +Q ++RE +R++E A KL Sbjct: 236 ALAQLNDNERTVLILRYGLEDGRERSLYRVSQQMGISREWVRKLEQTAKSKL 287 >UniRef50_Q8LK21 Chloroplast RNA polymerase sigma factor, c n=4 Tax=Chlamydomonas reinhardtii RepID=Q8LK21_CHLRE Length = 752 Score = 200 bits (508), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 102/273 (37%), Positives = 170/273 (62%), Gaps = 10/273 (3%) Query: 330 LHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVIS 389 L V + + L + EE V+ + R G +AK+ ++++N +LV++ Sbjct: 449 LEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAG----LKAKELLLKSNYKLVMT 504 Query: 390 IAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQART 449 + K + +G DL+ EG GL+K V+K++ +G++F TYA WWIRQA++RS+A+ R Sbjct: 505 VCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGRA 564 Query: 450 IRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMET 509 +R+P+HMIE + +L +S ++ ++ REPT ELA+ +P +++ +++ A+ S++T Sbjct: 565 VRLPMHMIEQLTRLKNLSAKLQTQLAREPTLPELAKAAGLPVTRVQMLMETARSAASLDT 624 Query: 510 PIGDDEDSHLGDFIEDTTLELPLDSAT---TESLRAATHDVLAGLTAREAKVLRMRFGID 566 PIG +E LG ++D+ + + ++SLR +L L REA+V+R+RFG+D Sbjct: 625 PIGGNE---LGPTVKDSVEDEREAADEEFGSDSLRNDMEAMLLELPEREARVVRLRFGLD 681 Query: 567 MNTDYTLEEVGKQFDVTRERIRQIEAKALRKLR 599 ++TLEE+G+ +VTRERIRQIEAKALRKLR Sbjct: 682 DGKEWTLEEIGEALNVTRERIRQIEAKALRKLR 714 >UniRef50_B1WQH6 RNA polymerase sigma factor n=5 Tax=Chroococcales RepID=B1WQH6_CYAA5 Length = 297 Score = 199 bits (507), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 103/234 (44%), Positives = 156/234 (66%), Gaps = 1/234 (0%) Query: 370 AKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFST 429 AK +RA+ +M++ANLRLV+SIAKKY N GL LDLIQEG++GL++ V+KF+ RGYKFST Sbjct: 56 AKGQRARDKMIQANLRLVVSIAKKYLNSGLSLLDLIQEGSLGLIRGVEKFDPSRGYKFST 115 Query: 430 YATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLM 489 YA WWIRQ ITR+IA+Q+RTIR+P+H+ E +NK + R++ ++GR+PT +E+AE M + Sbjct: 116 YAYWWIRQGITRAIAEQSRTIRLPIHINENLNKYRKSIRELTLKLGRKPTQQEIAENMDI 175 Query: 490 PEDKIRKVLKIAKEPISMETPIGDDED-SHLGDFIEDTTLELPLDSATTESLRAATHDVL 548 DK+R + + A + S I DE+ + LG + D P D + + + +L Sbjct: 176 SVDKLRFLQQAAFKTKSRSLNIVIDENHTELGQLLPDEDSVSPSDFVKQQEKISQINRML 235 Query: 549 AGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 602 L+ R+ +V+ +RFG+ + + +G+Q ++ ER RQI ++ALR LR S Sbjct: 236 ENLSPRQKEVIILRFGLRDGKQLSYKAIGEQCGISHERARQIYSRALRILRKQS 289 >UniRef50_B8KI17 RNA polymerase sigma factor n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KI17_9GAMM Length = 367 Score = 198 bits (504), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 93/225 (41%), Positives = 154/225 (68%) Query: 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 434 A+K M+E+NLRLV++IA++Y +RG+ LDLI+EGN+GLM+AV+KF+ RG++FSTYATWW Sbjct: 127 ARKRMIESNLRLVVNIARRYLHRGMSLLDLIEEGNLGLMRAVEKFDPERGFRFSTYATWW 186 Query: 435 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKI 494 IRQ I R I +QARTIR+P+H+++ +N R +R++ Q++ +PT +E+A R ++ Sbjct: 187 IRQTIERGIMNQARTIRLPIHVVKDLNGCLRAARELTQQLDHDPTTQEIASRTHKTATEV 246 Query: 495 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAR 554 +++ + + SM+ P+G + DS + + I D P + + + + L L+ + Sbjct: 247 SRLMGLNERVSSMDAPLGPNSDSSVAETIADEHGCDPSEQIQDDDVHDSVAHWLDELSEK 306 Query: 555 EAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLR 599 + +V+ RFG+ TLEEVG++ +TRER+RQI+ +AL++LR Sbjct: 307 QREVVVRRFGLLGYDSCTLEEVGQEIGLTRERVRQIQVEALKRLR 351 >UniRef50_Q9LD95 Sigma factor-like protein n=3 Tax=Eukaryota RepID=Q9LD95_ARATH Length = 547 Score = 198 bits (503), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 91/242 (37%), Positives = 160/242 (66%) Query: 371 KARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY 430 + R ++++++ ANLRLV+ IAK+Y NRGL F DL+QEG++GLMK+V+KF+ + G +F+TY Sbjct: 303 RGRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATY 362 Query: 431 ATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMP 490 A WWIRQ+I +SI +RTIR+P ++ + K++ + +QE P+ EELA + + Sbjct: 363 AYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVS 422 Query: 491 EDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAG 550 +K+ K+L + P+SM+ PI D+D+ + D+ +E P S + +R ++L Sbjct: 423 TEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNV 482 Query: 551 LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSF 610 L+ +E +++++RFGID +L E+G+ + +++ER+RQ+E++AL +L+ S L ++ Sbjct: 483 LSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMNSHGLHAY 542 Query: 611 LD 612 D Sbjct: 543 AD 544 >UniRef50_D0LPW6 RNA polymerase sigma factor n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LPW6_HALO1 Length = 465 Score = 197 bits (502), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 94/235 (40%), Positives = 159/235 (67%), Gaps = 3/235 (1%) Query: 368 GEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKF 427 E AR A+ E V+ANLRLV+SIA+++ + + DLIQEGN+GL+KAV++++YRRG++F Sbjct: 222 AEHAARNARNEFVKANLRLVVSIARRFNHGRMSLADLIQEGNLGLIKAVERYDYRRGFRF 281 Query: 428 STYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERM 487 STYA+WWIR AI R++AD+ R +R+PVHM++ ++L + Q+ +GR+PT EEL+E Sbjct: 282 STYASWWIRHAIGRALADKGREVRLPVHMLDAHHRLLKAQHQLTNTLGRQPTSEELSEAA 341 Query: 488 LMPEDKIRKV-LKIAKEPISMETPIGDDEDSHLGDFIEDTTLE--LPLDSATTESLRAAT 544 + +KI K+ + + +S++ P+ D++ + + ++D E L+ ++ Sbjct: 342 NLSVEKIEKMRTHLLDQALSLDRPMNDEDGRSVAEVLQDPHGEEHSALNVLAQRTMSDEV 401 Query: 545 HDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLR 599 L L EA +LR RFG+D + + TL+++G+Q++++RERIRQ++ +AL K+R Sbjct: 402 RKTLQTLRPIEADILRRRFGLDNDEELTLKQIGEQYNLSRERIRQLQEQALTKMR 456 >UniRef50_Q4BV73 RNA polymerase sigma factor n=1 Tax=Crocosphaera watsonii WH 8501 RepID=Q4BV73_CROWT Length = 386 Score = 197 bits (502), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 107/257 (41%), Positives = 172/257 (66%), Gaps = 19/257 (7%) Query: 349 EETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEG 408 +E G+++ +++ I +R +RAK++M++ANLRLV++++KKY +GL+F+DL+ EG Sbjct: 4 KEIGISVRELQLILKR-------GKRAKEKMIQANLRLVVAVSKKYQGKGLEFMDLVSEG 56 Query: 409 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISR 468 N+GL++AV+KFEY +GYKFSTYA WIRQA+ R+I D+ RTIR+PVH+ E I+KL ++ Sbjct: 57 NLGLIRAVEKFEYDKGYKFSTYAYHWIRQALVRAICDKGRTIRVPVHINEEISKLKKVQL 116 Query: 469 QMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEP-ISMETPI-GDDEDSHLGDFIEDT 526 ++ Q+ GR T EL+ER+ + +KIR VL+ P +S++ + GD+++S L F+ D Sbjct: 117 EIRQKYGRSATVRELSERLEISPEKIR-VLRSVNNPMLSLDQKVLGDEDNSTLLSFLADP 175 Query: 527 T--LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNT-DYTLEEVGKQFDVT 583 L+ LD+ + L L GL +E +VLR + + T TL E+GK+ +++ Sbjct: 176 NGDLQKFLDNLGNKEL---VEQCLCGLKPQEQRVLREYY---LETPSLTLNEIGKKMNLS 229 Query: 584 RERIRQIEAKALRKLRH 600 RER+R I+ AL KL+ Sbjct: 230 RERVRHIKNNALDKLKQ 246 >UniRef50_A6CZ07 RNA polymerase sigma factor n=1 Tax=Vibrio shilonii AK1 RepID=A6CZ07_9VIBR Length = 296 Score = 197 bits (501), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 105/250 (42%), Positives = 160/250 (64%), Gaps = 7/250 (2%) Query: 353 LTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL 412 L+ E + I R+ G+ AR + ++ +NLRLVI AK+Y+NRGL F DLI EGNIGL Sbjct: 37 LSAEDERHIARKARAGDTLAR---QHLINSNLRLVIRTAKRYSNRGLDFYDLINEGNIGL 93 Query: 413 MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQ 472 ++AVDKF+ GY+FSTYA WWI+QAI R+I +Q RTIR+PVH+ + I + ++ + ++ + Sbjct: 94 IQAVDKFDPELGYRFSTYAVWWIQQAIDRAIMNQGRTIRVPVHVTKQIRECSKAAHELRK 153 Query: 473 EMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPI---GDDEDSHLGDFIEDTTLE 529 E EPT E+AER +++ K+LK++++ +S++ GD +D HL +D E Sbjct: 154 EGNHEPTSSEIAERTGRAPEEVSKLLKLSEQSLSLDNGWDEEGDKKD-HLQTIDDDDVFE 212 Query: 530 LPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQ 589 LP T++L A D++ L ++ +L RFG+ + TLE+VG+ VTRER+RQ Sbjct: 213 LPEQDIVTQNLNKALIDLVDSLPDKQRVILHHRFGLLDDDPKTLEQVGEIVGVTRERVRQ 272 Query: 590 IEAKALRKLR 599 I+ A+ LR Sbjct: 273 IQKSAMETLR 282 >UniRef50_B5WXT8 DNA-directed RNA polymerase subunit D (Fragment) n=453 Tax=Proteobacteria RepID=B5WXT8_PSEST Length = 284 Score = 197 bits (501), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 119/276 (43%), Positives = 174/276 (63%), Gaps = 2/276 (0%) Query: 109 ELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDP 168 ELLTREGEI+IAKRIE+GI +V ++A +P + +L Y+RV +E RLSD+++G++DP Sbjct: 1 ELLTREGEIEIAKRIEEGIREVMSAIAHFPGTVDSILADYERVTSEGGRLSDILSGYIDP 60 Query: 169 NAEEDLAP--TATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRA 226 + + AP S+ DD +DEDE+D D + + D DPE+AR +F + Sbjct: 61 DDDGAAAPQEVEPQTPQTTSKPVDDDKDDEDEDDSDSEEEEGDGGPDPEVARVRFGAVAE 120 Query: 227 QYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERL 286 Q +K GR+ A EE+ L+ +F +LVPKQ+D LV +R ++++R QER Sbjct: 121 QLEKANKALKKHGRASQQATEELEALATLFMPIKLVPKQYDALVERVRNALNQIRAQERA 180 Query: 287 IMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQ 346 IM+LCV +MP+ +F+ F NET+ +W + ++E + + E++ R QKL + Sbjct: 181 IMQLCVRDARMPRADFLRQFPNNETNLSWADELANGKSKYAEAISNRKEDIQRCQQKLVE 240 Query: 347 IEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEA 382 +E+E L I +KDINRRMSIGEAKARRAKKEMVEA Sbjct: 241 LEQECALAIADIKDINRRMSIGEAKARRAKKEMVEA 276 >UniRef50_D1IHF7 Whole genome shotgun sequence of line PN40024, scaffold_40.assembly12x (Fragment) n=2 Tax=rosids RepID=D1IHF7_VITVI Length = 561 Score = 197 bits (500), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 93/239 (38%), Positives = 155/239 (64%) Query: 374 RAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW 433 R++++++ ANLR+V+ IAK+Y RGL DL+QEG++GLM +V+KF+ G +F++YA W Sbjct: 320 RSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAYW 379 Query: 434 WIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDK 493 WIRQA+ ++I +RTIR+P +M + K+ R +QE +PT EE+AER+ + +K Sbjct: 380 WIRQAVRKAIFQHSRTIRLPENMYSLLGKVKEAKRLFIQEGHHDPTKEEIAERVGITIEK 439 Query: 494 IRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTA 553 ++++L + P+SM+ P+ D+D+ + DT +E+P S + +R ++L LT Sbjct: 440 LQRLLLHTRMPLSMQQPVWADQDTTFQEVTADTGIEIPDVSVAKQLMRQHVRNLLHVLTP 499 Query: 554 REAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 +E +++R+RFGI TL E+G F ++ER+RQ+E +AL KL+ S L S+ D Sbjct: 500 KERRIIRLRFGIGDGIPRTLSEIGLVFGFSKERVRQLEQRALHKLKQCLSSHGLESYTD 558 >UniRef50_Q6A8Y3 RNA polymerase principal sigma factor HrdD n=2 Tax=Propionibacterium acnes RepID=Q6A8Y3_PROAC Length = 312 Score = 195 bits (495), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 93/226 (41%), Positives = 146/226 (64%) Query: 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 434 A V ANLRLV+S+A+KY + LDL+QEGN GL++AV+KF+Y +G+KFSTYATWW Sbjct: 79 ALAHFVRANLRLVVSVARKYGRSQMPLLDLVQEGNTGLIRAVEKFDYAKGFKFSTYATWW 138 Query: 435 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKI 494 +RQAI+R IA Q R +R+PVH+ E +N+++ R + +++GREP E+A+ + + E+++ Sbjct: 139 VRQAISRGIAQQGRIVRLPVHVAEQVNQVSAARRNLERQLGREPETFEIADELEITEERV 198 Query: 495 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAR 554 ++++ ++ +S++ P+ DD D+ LGD I T P D R+ +L L R Sbjct: 199 IELIRFGRDHVSLDAPVEDDGDTSLGDLIARETSPGPDDIVLDAEDRSRLEGLLDDLDER 258 Query: 555 EAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 600 A V+R R+G+ L ++GK + +T ER+RQIE AL +R Sbjct: 259 SADVVRRRYGLVDGRQAKLADIGKVWGITAERVRQIERAALASMRQ 304 >UniRef50_B9L491 RNA polymerase sigma factor n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L491_THERP Length = 334 Score = 194 bits (494), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 102/230 (44%), Positives = 151/230 (65%) Query: 371 KARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY 430 K + A+++++ NLRLV+SIAK+Y + L +DLIQEGNIGLM AV++++ GY+FSTY Sbjct: 95 KGQEAREKLIRHNLRLVVSIAKRYRSSELPLIDLIQEGNIGLMTAVERYDPELGYRFSTY 154 Query: 431 ATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMP 490 AT+WIRQAI R++A+ +RTIR+PVHM + I K+ R Q+ Q+ GR T EELAE + + Sbjct: 155 ATFWIRQAIGRAVANLSRTIRVPVHMHDLIAKIRRAEAQIEQQKGRPATNEELAELLGID 214 Query: 491 EDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAG 550 +I + S++ PIG+D +S +GD + D + ++ A T ++R L Sbjct: 215 VARIEQARTQIPRTSSLDKPIGEDGESSIGDLLPDPRSDDVVEEALTNAIREQIRRSLEQ 274 Query: 551 LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 600 LT RE VL MRFG+D TL E+ ++RER+RQ+E +AL+KLR+ Sbjct: 275 LTERERTVLVMRFGLDGEQPRTLAEIADALKISRERVRQVEKEALQKLRN 324 >UniRef50_A5JEM2 Chloroplast RNA-polymerase sigma factor (Fragment) n=2 Tax=stramenopiles RepID=A5JEM2_9STRA Length = 404 Score = 194 bits (493), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 108/267 (40%), Positives = 160/267 (59%), Gaps = 13/267 (4%) Query: 355 IEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK 414 ++ + DI + + +A ++K ++ ANLRLV+S AK Y RG+ F DL+QEG GL K Sbjct: 132 LKSIDDIRKNLK----RASKSKSAIINANLRLVVSTAKAYQYRGVSFQDLVQEGTCGLHK 187 Query: 415 AVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEM 474 A +KF+ R+G++FSTYATWWI+Q I R++ DQ+R +R+PVH+ + + + R E Sbjct: 188 ATEKFDPRKGFRFSTYATWWIKQGIMRAVTDQSRVVRLPVHVHDALFHIRRAKANFWTEH 247 Query: 475 GREPTPEELAERM-LMPE-----DKIRKVLKIAKEPISMETPIGDDEDSHLG--DFIEDT 526 REPT ELAE L P+ D ++ + + + + T E S + D +D+ Sbjct: 248 LREPTLAELAEATGLTPQKIVFYDTVKDKVSSIDKTVGIGTKTNSMEKSQIAISDMCKDS 307 Query: 527 TLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRER 586 + P ++A ESLR ++ L+ RE V+RMR+G+D TLEE+G F VTRER Sbjct: 308 RNK-PEETAQVESLRQDISRLINTLSPREQDVVRMRYGLDDGEIRTLEEIGSIFSVTRER 366 Query: 587 IRQIEAKALRKLRHPSRSEVLRSFLDD 613 +RQIEA+AL KLR P R+ L+ LD Sbjct: 367 VRQIEARALHKLRQPYRNHRLKGQLDS 393 >UniRef50_A3ZWN2 RNA polymerase sigma factor n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZWN2_9PLAN Length = 516 Score = 193 bits (491), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 109/245 (44%), Positives = 150/245 (61%), Gaps = 16/245 (6%) Query: 374 RAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW 433 RA++ + ANLRLV+SIAK + RGL +LDLIQEGN+GLM+AV+KF+ GYKF+TYATW Sbjct: 270 RAQRAITSANLRLVVSIAKSFRGRGLSYLDLIQEGNLGLMRAVEKFDPSLGYKFATYATW 329 Query: 434 WIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPE------ELAERM 487 WIRQA+ + +ADQ RTIR+P M + I K+N + QE EP E EL ER Sbjct: 330 WIRQAVMKGLADQGRTIRLPARMQDRIQKINVAKAILSQEHRSEPPIELTAKQAELTERE 389 Query: 488 LMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDV 547 ++ D++ + + M + +++D GD + E SA + L A + + Sbjct: 390 VVAADRLGRTI--------MSLDVSNNDDDSFGDTLASGDAE--QSSADEQRLPLAINQL 439 Query: 548 LAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVL 607 L LT+RE +++R RFG+ TLEEV + F VTRERIRQIE+ A+RKLR P L Sbjct: 440 LQELTSREQEIVRRRFGMFDGRVQTLEEVSQAFSVTRERIRQIESAAIRKLRQPHLIRKL 499 Query: 608 RSFLD 612 FL+ Sbjct: 500 DDFLE 504 >UniRef50_D1J322 Whole genome shotgun sequence of line PN40024, scaffold_24.assembly12x (Fragment) n=3 Tax=Magnoliophyta RepID=D1J322_VITVI Length = 575 Score = 192 bits (489), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 108/282 (38%), Positives = 168/282 (59%), Gaps = 15/282 (5%) Query: 341 LQKLQQ-IEEETGL--TIEQV--------KDINRRMSIGEAKARRAKKEMVEANLRLVIS 389 L+KLQ+ +EE G+ T Q K + RR + G R K +M+++N+RLVIS Sbjct: 296 LEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGI----RCKDKMIKSNIRLVIS 351 Query: 390 IAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQART 449 IAK Y G+ DL+QEG GL++ +KF+ +G+KFSTYA WWI+QA+ +S++DQ+RT Sbjct: 352 IAKNYQGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 411 Query: 450 IRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMET 509 IR+P HM+E ++ +Q+ E GR P EE+AE + ++ VL K P S++ Sbjct: 412 IRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLNAVLLTPKAPRSLDQ 471 Query: 510 PIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNT 569 IG +++ + I D E + + +R VL L RE +V+R R+G++ Sbjct: 472 KIGINQNLKPSEVIADPDAETAEELLIKQFMREDLEKVLNSLNPREKQVIRWRYGLEDGR 531 Query: 570 DYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 TL+E+G+ V+RERIRQIE+ A RKL++ R++ L+ +L Sbjct: 532 TKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYL 573 >UniRef50_B6J9R7 RNA polymerase sigma factor RpoD n=1 Tax=Oligotropha carboxidovorans OM5 RepID=B6J9R7_OLICO Length = 387 Score = 192 bits (489), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 117/276 (42%), Positives = 165/276 (59%), Gaps = 14/276 (5%) Query: 348 EEETGLTIEQVKDI--------NRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTN-RG 398 E E G TI KDI N+ +A +AK VE+NL V +A + N + Sbjct: 111 ERELGRTIRLAKDIQYAALEDLNQYERQLVHRAEKAKARFVESNLLYVRKLANRKRNLKH 170 Query: 399 LQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIE 458 L DL QEG +GL+KA + F+ G++F TYATWWI+Q ++R++ D RTIR+PVH E Sbjct: 171 LTADDLFQEGLMGLLKATELFDPELGFRFKTYATWWIQQYMSRALDDGDRTIRLPVHRHE 230 Query: 459 TINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLK--IAKEPISMETPIGDDED 516 K+ R + ++ E+GREPT ELA + + +++ K+L E + + PIG ED Sbjct: 231 YFRKIKRKTAKLTFELGREPTLNELATELGLERERLAKLLWRLHVTECVEADAPIG--ED 288 Query: 517 SHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEV 576 + + + D + + LD + LR VLA L RE +++RMRFG+D + + TLE + Sbjct: 289 TTVLSYKADESPSI-LDLVALQQLRTMVARVLATLVPREERIIRMRFGLDGSGEQTLEAI 347 Query: 577 GKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 G F VTRERIRQIEAKALRKL+HPSRS LR+FL+ Sbjct: 348 GNVFGVTRERIRQIEAKALRKLKHPSRSRALRTFLE 383 >UniRef50_Q2S172 RNA polymerase sigma-70 factor n=91 Tax=Bacteroidetes/Chlorobi group RepID=Q2S172_SALRD Length = 313 Score = 192 bits (489), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 99/225 (44%), Positives = 152/225 (67%) Query: 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 434 A ++ ANLR V+S+AKKY +GL DLI EGN GL+KA +F+ RG+KF +YA WW Sbjct: 76 ALHKLCRANLRFVVSVAKKYQGQGLSLADLINEGNYGLIKAAKRFDETRGFKFISYAVWW 135 Query: 435 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKI 494 IRQAI +++A+Q+R +R+P++ I TI+K+ + S ++ Q++ R+P EELAE + + K+ Sbjct: 136 IRQAILQALAEQSRVVRLPLNRIGTISKIRKASARLQQDLDRKPNIEELAEELEIDVQKV 195 Query: 495 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAR 554 R+ +K +SM+ P +++D+ L D + D + P + +ES++ L+ L R Sbjct: 196 REAMKHTSRHLSMDAPFNEEDDNSLLDVLPDEDNDSPDEEMLSESVKIDIERALSALHDR 255 Query: 555 EAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLR 599 EA++ R+ FGI TLEE+GK+FD+TRER+RQI+ KALRKLR Sbjct: 256 EAEITRLYFGIGREHPLTLEEIGKRFDLTRERVRQIKEKALRKLR 300 >UniRef50_Q3LW61 Sigma 2 transcription factor n=1 Tax=Bigelowiella natans RepID=Q3LW61_BIGNA Length = 389 Score = 191 bits (486), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 106/258 (41%), Positives = 172/258 (66%), Gaps = 6/258 (2%) Query: 355 IEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK 414 I+ +I R++IG+ +K+ +++ +L+L+ISIAK+Y GL F DLI EG +GLMK Sbjct: 134 IDLTSEIKERLAIGKI----SKEILIKRSLKLIISIAKRYNGCGLSFEDLIAEGILGLMK 189 Query: 415 AVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEM 474 + K+++ +G+KFSTYA WWIRQ+I+RSI DQ+R IR+PV++ E ++K+N+I + ++ Sbjct: 190 GIRKYDFSKGHKFSTYAHWWIRQSISRSIDDQSRIIRLPVYVKEILSKINKIKNKFYEDK 249 Query: 475 GREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPI-GDDEDSH-LGDFIEDTTLELPL 532 R PT EE++ + +P K+RK+L + IS+++ I D DS+ L D IED+ + Sbjct: 250 KRYPTEEEISLLIGIPLKKLRKLLLSCNDLISLDSLIENDSNDSNMLNDSIEDSKVINSE 309 Query: 533 DSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEA 592 A +SL+ + L L+ RE+ V+R+R+G+D + TLEE+G+ +VTRER RQIE Sbjct: 310 VYAIEKSLKQDLNKALLTLSDRESAVIRLRYGLDDGNERTLEEIGEYLNVTRERARQIEI 369 Query: 593 KALRKLRHPSRSEVLRSF 610 KAL+KL+ + + + + Sbjct: 370 KALKKLQFNTSNYLFSDY 387 >UniRef50_Q1Z2N9 RNA polymerase sigma factor n=9 Tax=Photobacterium RepID=Q1Z2N9_PHOPR Length = 291 Score = 191 bits (485), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 98/229 (42%), Positives = 148/229 (64%), Gaps = 1/229 (0%) Query: 373 RRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT 432 + AKK M+E+NLRLV+SIAKKY G+Q DLI EGNIGL+ +V+KF+ RG++FSTYAT Sbjct: 46 KEAKKVMIESNLRLVVSIAKKYRGSGMQLSDLIDEGNIGLITSVEKFDPERGFRFSTYAT 105 Query: 433 WWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPED 492 WWI+Q I R I +QARTIR+PVH+ + IN + R +Q++++ +EPT EE+AE++ D Sbjct: 106 WWIKQTIERCIHNQARTIRLPVHVSKEINTIIRTHKQLMKKNNQEPTREEVAEKLERSVD 165 Query: 493 KIRKVLKIAKEPISMETPIGDDEDSH-LGDFIEDTTLELPLDSATTESLRAATHDVLAGL 551 I VL +S + I DD +S + FI D + + P + ++ +L L Sbjct: 166 DISSVLAYDAPIVSFDQTINDDANSQSISVFIADDSSDKPESQVDKDDIKGLALAMLENL 225 Query: 552 TAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 600 R+ ++L RFG+ TL++V + +TRERIRQ++ +L+KL++ Sbjct: 226 NQRDREILCRRFGLLGYEVQTLQQVANEVGLTRERIRQLQVSSLKKLKN 274 >UniRef50_Q2JMC5 RNA polymerase sigma factor n=2 Tax=Synechococcus RepID=Q2JMC5_SYNJB Length = 319 Score = 190 bits (483), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 101/240 (42%), Positives = 153/240 (63%), Gaps = 8/240 (3%) Query: 352 GLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIG 411 G+ + +++ I R+ GEA AKK MVE NLRLV+SIAK+Y NRGL FLDLIQEG IG Sbjct: 60 GIPLAELQQILRQ---GEA----AKKRMVECNLRLVVSIAKRYRNRGLPFLDLIQEGTIG 112 Query: 412 LMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQML 471 L +AV+KF+ RGYKFSTYATWWIRQ++ R I ++ R IR+P HM E ++++ R R++ Sbjct: 113 LTRAVEKFDPTRGYKFSTYATWWIRQSVNRGIQNKGRMIRLPAHMYEKVSQVKRRYRELS 172 Query: 472 QEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELP 531 E G P EE+ + + + ++ + + E S+ +GD++ + L FI D + P Sbjct: 173 AERGSRPQAEEVFDSLDIGDNYRELITRHMAEMRSLNVGVGDEDGTELQHFIPDEDND-P 231 Query: 532 LDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIE 591 ++ T + R ++ L+ RE +V+ R+G+D + TL E+G+ ++RER+RQIE Sbjct: 232 VEHLTQLARREEVRALVGQLSERERQVIVARYGLDGSRGLTLREIGEHIGLSRERVRQIE 291 >UniRef50_Q73P62 RNA polymerase sigma factor n=2 Tax=Treponema RepID=Q73P62_TREDE Length = 286 Score = 190 bits (483), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 91/238 (38%), Positives = 154/238 (64%), Gaps = 1/238 (0%) Query: 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 434 AK +V +NLR V+++AKKY N+GL +DLI EGNIGLM A ++F+ +GYKF +YA WW Sbjct: 48 AKNMLVNSNLRFVVNVAKKYQNQGLPLMDLISEGNIGLMNAAERFDVSKGYKFISYAVWW 107 Query: 435 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKI 494 I+Q+I ++I +++R IR+P++ + ++ + +++ E+A + M + Sbjct: 108 IKQSILKAICEKSRMIRLPLNRANELVQIEKAKKEIDFSGNETKELNEIAGILNMDNSMV 167 Query: 495 RKVLKIAKEPISMETPIGDDE-DSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTA 553 ++ A+EPIS++ P+ D+ S + DF++D T ++P D A SLR +++L L Sbjct: 168 HTIMNAAREPISIDAPVFDEPGSSSVNDFLQDETHQMPEDYAMDMSLRDEVNELLKNLDD 227 Query: 554 REAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 REA+++R RFG+ +L+EVG F++T+ERIRQIE KAL++L+ P+ + L ++ Sbjct: 228 REAEIIRYRFGLGGYAPLSLKEVGLIFNLTKERIRQIEKKALQQLKKPAEKQKLAVYV 285 >UniRef50_C6JJT6 RNA polymerase sigma factor n=5 Tax=Fusobacterium RepID=C6JJT6_FUSVA Length = 275 Score = 190 bits (482), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 95/235 (40%), Positives = 155/235 (65%), Gaps = 8/235 (3%) Query: 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 434 +K +++ +NLRLV++IAK Y N+GL F+DLI EGN+GL+ A++KF+ +G++FSTYA WW Sbjct: 41 SKNQLILSNLRLVVNIAKGYINKGLSFIDLISEGNLGLIYAIEKFDITKGFRFSTYAVWW 100 Query: 435 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKI 494 I+Q+I++++ + R IRIP + + +NK+NR L++ G P EE+A + + DKI Sbjct: 101 IKQSISKAVIVKGREIRIPSYKYDLLNKVNRYVMSRLKDEGNYPPVEEIAAELNIDVDKI 160 Query: 495 RKVLKIAKEPISMETPIGDDEDSHLGDFI---EDTTLELPLDSATTESLRAATHDVLAGL 551 + ++ ++P+S+ T IGD D +L D + ED ++E + E R D++ L Sbjct: 161 QDIIMDFQDPMSLSTQIGD--DIYLEDTLAQQEDFSME---EEIFNEMGRKQVRDMVNQL 215 Query: 552 TAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEV 606 RE ++L++R+G+D +TLEE+G ++TRER+RQIE K L+KLR E+ Sbjct: 216 EEREKEILKLRYGLDGYEIHTLEEIGNTLNITRERVRQIEKKTLQKLRSKYTKEL 270 >UniRef50_B1ZRN1 RNA polymerase sigma factor n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZRN1_OPITP Length = 347 Score = 189 bits (481), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 110/262 (41%), Positives = 152/262 (58%), Gaps = 12/262 (4%) Query: 344 LQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLD 403 LQ I + LT + + R+ G+A AR M+ ANLRLV+ IAK Y GL D Sbjct: 39 LQDIGQTPLLTAREEFALAERVRRGDAGAR---DHMIRANLRLVVRIAKDYAQYGLPLAD 95 Query: 404 LIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKL 463 LI EGN+GL+ AVD+F+ R G K STYA WWIRQAI R+ A AR IR+PVHM++ I +L Sbjct: 96 LISEGNVGLIHAVDRFDPRIGGKLSTYAAWWIRQAIRRAFAHHARAIRLPVHMLDRIARL 155 Query: 464 NRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDS-HLGDF 522 R + ++ GRE T +ELA + P +KI P S++ +G +S L + Sbjct: 156 RRAQASLSEQFGREATTDELAAELQAPVEKIALWKSAGDAPFSLDAAVGTGSESRRLSET 215 Query: 523 IED----TTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGK 578 I D T D+ T LRA ++A L REA +LR+RFG+D + TL V Sbjct: 216 IRDERAPTAFTQLRDATTARDLRA----IIATLDVREATILRLRFGLDGDEPQTLHAVSL 271 Query: 579 QFDVTRERIRQIEAKALRKLRH 600 +F +TRER+RQ+E +AL+ +R+ Sbjct: 272 RFGITRERVRQLERRALQNVRN 293 >UniRef50_A4AF82 RNA polymerase sigma factor n=9 Tax=Bacteria RepID=A4AF82_9ACTN Length = 1108 Score = 189 bits (480), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 108/261 (41%), Positives = 150/261 (57%), Gaps = 7/261 (2%) Query: 356 EQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKA 415 EQ R + +A +N RLV SIA++Y N GL + DLIQEG +GL++A Sbjct: 664 EQRSPSGRELQWVAKNGEKAFARFAASNYRLVFSIARRYVNNGLDYADLIQEGALGLLRA 723 Query: 416 VDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMG 475 + KF+Y +G+KFSTYATWW+RQAITR++AD TIRIPVHM+E NKL + +R + Sbjct: 724 IQKFDYMKGFKFSTYATWWVRQAITRALADLGSTIRIPVHMVEQQNKLRQAARSFELQND 783 Query: 476 REPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDED-SHLGDFIEDTTLELPLDS 534 R+PT ELA + E + L +S++ + E L + + D ++ P+D Sbjct: 784 RKPTISELAAGAEVTEQDASRALGYEYSFLSIDKELDPGEGFGSLHNLLVDESVA-PVDL 842 Query: 535 ATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKA 594 R A ++VL+ L RE+ ++MRFGI TL+ +G F VTRERIRQIE K Sbjct: 843 LIHAEFRGAMNNVLSALPKRESTTIQMRFGIGGQDPATLDHIGDIFGVTRERIRQIEKKT 902 Query: 595 LRKLRHPSRSEV---LRSFLD 612 + LR S +EV L FLD Sbjct: 903 MESLR--SSAEVQGRLGDFLD 921 >UniRef50_A6FX97 RNA polymerase sigma factor n=2 Tax=Plesiocystis pacifica SIR-1 RepID=A6FX97_9DELT Length = 421 Score = 189 bits (480), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 94/235 (40%), Positives = 156/235 (66%), Gaps = 8/235 (3%) Query: 373 RRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT 432 R +K + V+ANLRLV++IA+++ + + DL+QEGN+GLMKAVD+F+ RGY+FSTYAT Sbjct: 178 RWSKNKFVKANLRLVVTIARRFDHGLMPLQDLVQEGNLGLMKAVDRFDPTRGYRFSTYAT 237 Query: 433 WWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPED 492 WWIR AI R++A++ RT+R+P H+ + +L R++R++ + G PTPE+LA+ + + Sbjct: 238 WWIRHAINRALANKGRTVRLPAHVSADLQRLRRVTRELEAKTGETPTPEQLAQAAGLSKT 297 Query: 493 KIRKVLKIAKEP-ISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGL 551 ++RK+ K+ +P +S++ P DD+ L D +ED ++ + D ++L D L L Sbjct: 298 RVRKLSKLTLDPTVSLDAPSHDDDARGLLDRLEDASVPVAADILEHQALNEHLRDALYNL 357 Query: 552 TAREAKVLRMRFGIDM----NTDY---TLEEVGKQFDVTRERIRQIEAKALRKLR 599 E +L+ R+GI + D+ TL ++G++ ++RERIRQ++ +AL KLR Sbjct: 358 QPIELDILKRRYGIATSEAESVDFEPMTLRQLGERHSLSRERIRQLQERALTKLR 412 >UniRef50_D2R4L7 RNA polymerase, sigma 70 subunit, RpoD subfamily n=8 Tax=Planctomycetaceae RepID=D2R4L7_9PLAN Length = 320 Score = 189 bits (480), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 97/227 (42%), Positives = 152/227 (66%), Gaps = 4/227 (1%) Query: 374 RAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW 433 RA+ MV ANLRLV++IA+ YT +GL DLI+EGN+GL++AV+ F+ G +FSTYA++ Sbjct: 74 RARDRMVRANLRLVVNIARGYTGKGLSLQDLIEEGNLGLLRAVEGFDPAVGTRFSTYASY 133 Query: 434 WIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDK 493 WI+Q+I R++ + A+TIRIP +M+E ++K R + ++ +E+GR PTPEE+A + + + K Sbjct: 134 WIKQSIKRALINSAKTIRIPAYMVELLSKWRRATARLTEELGRGPTPEEVARVLGLAKKK 193 Query: 494 IRKVLKIAKEPISMETPIGDDEDS--HLGDFIEDTTLELPLDSATTESLRAATHDVLAGL 551 + + K + I TP D ++ LG+ + D L+ P D + + ++L + Sbjct: 194 LPIIKKAIR--IYNSTPQTDQSEAGWSLGEIVMDERLKNPEDELVEQDVLKHVMEMLHTM 251 Query: 552 TAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKL 598 +REA VLRMRFG+ T +TL+E+G+ +TRER+RQIE +AL KL Sbjct: 252 DSREATVLRMRFGLGDTTPHTLKEIGESLGLTRERVRQIETEALGKL 298 >UniRef50_C0QYD2 RNA polymerase sigma factor n=2 Tax=Brachyspira RepID=C0QYD2_BRAHW Length = 309 Score = 189 bits (479), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 91/236 (38%), Positives = 153/236 (64%) Query: 378 EMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ 437 ++V++NLRLVISIAK+Y N G+ F+D+I EGNIGL++AV +FEY++G+KFSTY WWI+Q Sbjct: 74 KLVKSNLRLVISIAKRYYNSGVPFIDIIDEGNIGLIEAVKRFEYKKGFKFSTYGVWWIKQ 133 Query: 438 AITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKV 497 +I + I+ + IR P+H+ I K + S+ + Q++GR+PT +E+++ M + + + Sbjct: 134 SIVKEISSKRHIIRFPMHIARLIKKSIQTSKTLTQKLGRDPTIDEISKEMKIDRKTLSYI 193 Query: 498 LKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAK 557 + ++ S+++ + +++ + IED P A +SLR + L L +E Sbjct: 194 MIFTQDTASVDSFFRNSDNNDMTSIIEDKNFPSPHQKAFMDSLRDTLTEALKCLDEKERT 253 Query: 558 VLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 V+ R+G+ TLE+ GK+ ++TRER+RQI+ KA++KL + S+ L+SFL D Sbjct: 254 VIISRYGLYGKEAKTLEDTGKELNITRERVRQIQIKAIKKLAGLNLSKELKSFLWD 309 >UniRef50_Q9KJT7 RNA polymerase sigma factor n=1 Tax=Peanut witches'-broom phytoplasma RepID=Q9KJT7_PEWBP Length = 458 Score = 189 bits (479), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 111/236 (47%), Positives = 144/236 (61%), Gaps = 8/236 (3%) Query: 382 ANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITR 441 +NLR+V+SIAKK + RG FLDLI EGN+GLMK VDKF+Y +G+KFSTYATWWIRQAITR Sbjct: 222 SNLRIVVSIAKKQSERGQYFLDLIHEGNMGLMKTVDKFDYTKGFKFSTYATWWIRQAITR 281 Query: 442 SIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTP---EELAERMLMPEDKIRKVL 498 ++ADQ+RTIR PVH+ + +NK ++ Q++ R+ E+A+ M + K+ + Sbjct: 282 AVADQSRTIRCPVHVSDILNKNFAFKSKLTQDLARKARKAENHEIAKAMNIETKKLM-IY 340 Query: 499 KIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVL-AGLTAREAK 557 K K F + + T + + + L LT RE Sbjct: 341 KWLKRNDFFRNIYSWWRWFFFRWFYKRSLRYFASWLYVTRNFKKTLEESLEEALTPREQL 400 Query: 558 VLRMRFGI--DMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 VL+MR+GI N +TLEEVG + VTRERIRQIE KALRKLRHPSRS L SFL Sbjct: 401 VLKMRYGILEGDNRVHTLEEVGAKLGVTRERIRQIETKALRKLRHPSRSNPL-SFL 455 >UniRef50_A6GB19 RNA polymerase sigma factor n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GB19_9DELT Length = 384 Score = 188 bits (478), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 90/231 (38%), Positives = 150/231 (64%), Gaps = 1/231 (0%) Query: 370 AKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFST 429 + R+ + +ANLRLV+S+A++ +N L DLIQEGNIGL+KA+++F++R+G++FST Sbjct: 145 GRVRKYTNDFAKANLRLVVSLARRLSNGRLPLQDLIQEGNIGLLKAIERFDHRKGFRFST 204 Query: 430 YATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLM 489 YA+WWIR +I+R+I ++ R +R+PVH+ + K+ R+ R+ ++GREPT EE+A + + Sbjct: 205 YASWWIRHSISRAIYNKGRQVRLPVHVYDVHQKITRVRRRYEAQIGREPTHEEIANEIGV 264 Query: 490 PEDKIRKVLKIAKEPI-SMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVL 548 P K+ K+ I PI S++ P+ ++D D +ED P L D L Sbjct: 265 PLAKVEKIAAIELGPIVSLDAPLSRNDDRSGVDLLEDQVSPGPGFELELGELEEGLEDAL 324 Query: 549 AGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLR 599 + L EA +LR R+G+D TL E+G+++ ++RERIRQ++ +A+ ++R Sbjct: 325 SALRPMEADILRRRYGLDGVEKETLREIGERYALSRERIRQLQERAVSRMR 375 >UniRef50_C5J5B4 DNA-directed RNA polymerase subunit D (Fragment) n=1 Tax=uncultured gamma proteobacterium RepID=C5J5B4_9GAMM Length = 255 Score = 188 bits (478), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 102/266 (38%), Positives = 154/266 (57%), Gaps = 14/266 (5%) Query: 112 TREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAE 171 TREGE++IAKRIEDG+NQV ++++YP + + + R+ E RL D+++GF+DP +E Sbjct: 4 TREGELEIAKRIEDGLNQVLAALSQYPRTMHIVHQAGARLSVGELRLGDVLSGFIDPASE 63 Query: 172 EDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVT 231 AP H + + +GDD D D E + A L + Sbjct: 64 --TAPPVPH------------QNNGENRNGDDSEEAVDTGPDLEEVCARIAALVELHKRA 109 Query: 232 RDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLC 291 +K GR H TA+ +L+E QF+ VP+ FD LV ++R ++ R+R++ER IM++C Sbjct: 110 LAAVKRYGRDHKTARRRYEELAEQIVQFKFVPRFFDLLVGNLRQVIQRIRSKERAIMEIC 169 Query: 292 VEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEET 351 V Q +MP++ F++ F ET W + + +S L + +E+ R QKL IE+E Sbjct: 170 VRQTQMPRREFVSTFPKRETDPQWLQDQLNAGRAYSAGLREHIDEITRLQQKLVSIEKEA 229 Query: 352 GLTIEQVKDINRRMSIGEAKARRAKK 377 L+I ++K+INRRMSIGEAKARRAKK Sbjct: 230 CLSIGEIKEINRRMSIGEAKARRAKK 255 >UniRef50_B3R1P5 RNA polymerase sigma factor n=78 Tax=Betaproteobacteria RepID=B3R1P5_CUPTR Length = 395 Score = 187 bits (474), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 99/236 (41%), Positives = 150/236 (63%), Gaps = 2/236 (0%) Query: 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 434 A++ M+E NLRLV+SIAK Y NRG+ LDLI+EGN+GLM A++KF+ RG++FSTYATWW Sbjct: 155 ARQVMIERNLRLVVSIAKGYLNRGVPLLDLIEEGNLGLMHAIEKFDPSRGFRFSTYATWW 214 Query: 435 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEM--GREPTPEELAERMLMPED 492 IRQ+I R+I +QART+R+PVH+I +N++ R R + + GR+ + E++A + D Sbjct: 215 IRQSIERAIMNQARTVRLPVHVIRELNQVLRAKRHLEKGGTDGRDASLEDIAHLLGKTPD 274 Query: 493 KIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLT 552 +++ VL + + S++TP D S L DF+ D P L LA L+ Sbjct: 275 EVQDVLALNEHTTSLDTPFDLDPGSSLLDFLSDEHNAAPDQEVAHRELEGLMKLWLARLS 334 Query: 553 AREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLR 608 + V+ RFG++ TLEE+ ++ +TRER+RQI+ +AL KL+ S+ +R Sbjct: 335 EKHRYVVERRFGLNHIEPATLEELAEEMGLTRERVRQIQQEALVKLKRHFASQGVR 390 >UniRef50_Q0F2K4 RNA polymerase sigma factor n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F2K4_9PROT Length = 282 Score = 187 bits (474), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 100/240 (41%), Positives = 155/240 (64%), Gaps = 4/240 (1%) Query: 361 INRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE 420 + +R+ G+ + A MV+ANLRLV+ I+++Y NRG+ DLI+EGN+GL++AV+KF+ Sbjct: 32 LAKRIGAGD---KEAHHYMVQANLRLVVKISRRYMNRGVALADLIEEGNLGLIRAVEKFD 88 Query: 421 YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTP 480 G +FSTYATWWIRQA+ R+I +Q+RTIR+PVH+ + + L + + ++ E+ R+PT Sbjct: 89 VTHGCRFSTYATWWIRQAVERAIMNQSRTIRVPVHVGKELYALTKHTNRLRSELERDPTD 148 Query: 481 EELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESL 540 E+AE M + +I++++ A S + + DD D L D D E P D T Sbjct: 149 VEIAEAMGVSVQRIQELMGAAVRTDSADDMLHDDSDFTLYDVTADEAAESPGDQMQTVLR 208 Query: 541 RAATHDVLAGLTAREAKVLRMRFGIDMNTD-YTLEEVGKQFDVTRERIRQIEAKALRKLR 599 ++ L +E +V+R+R+G+D D +TLE +G+Q VTRERIRQI+ +AL+KLR Sbjct: 209 NEILQVWMSKLEKKEREVVRLRYGLDDAGDPWTLEMIGEQLGVTRERIRQIQVQALQKLR 268 >UniRef50_C4V1Y7 RNA polymerase sigma factor n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V1Y7_9FIRM Length = 352 Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 105/246 (42%), Positives = 152/246 (61%), Gaps = 9/246 (3%) Query: 374 RAKKEMVEANLRLV----ISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFST 429 +A++++ N +LV + K+Y +R L F D+ Q G IGL+ A KF+ GY FST Sbjct: 109 QAEQDLCVKNKKLVDKYALGYEKRYRHR-LDFDDIEQAGFIGLITAAKKFDISMGYSFST 167 Query: 430 YATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLM 489 YA WWI+QAITR I D IRIPVHM+E I K+ + M E+ RE ++ + Sbjct: 168 YAVWWIKQAITREIMDHGFVIRIPVHMMEQIIKVAGVE-NMFSELNREERIVKVMDETGY 226 Query: 490 PEDKIRKVLKIAKEPI---SMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHD 546 E+++R+ + + + + S+ +G+DE LG+F+ D + + LR D Sbjct: 227 KEERVRECMMLKEYVLTYSSLNVTVGEDETVELGEFLSDDGAISIEEMIENKELRRMLDD 286 Query: 547 VLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEV 606 VL LT +E KV+++RFG++ N +TLEEVGK F+VTRERIRQIE+KALRKLRHPSR Sbjct: 287 VLNTLTEKEKKVIKLRFGLEDNRQWTLEEVGKLFNVTRERIRQIESKALRKLRHPSRLHN 346 Query: 607 LRSFLD 612 ++SFL+ Sbjct: 347 IKSFLE 352 >UniRef50_B9S0J0 RNA polymerase sigma factor rpoD, putative n=1 Tax=Ricinus communis RepID=B9S0J0_RICCO Length = 548 Score = 186 bits (472), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 86/241 (35%), Positives = 154/241 (63%) Query: 372 ARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYA 431 R++++++ ANLR+V+ IAK+Y RGL DL+QEG++GLMK+++KF+ + G +F+TYA Sbjct: 305 GNRSREKLINANLRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSIEKFKPQVGCRFATYA 364 Query: 432 TWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPE 491 WWIRQ + ++I +RTIR+P ++ T+ K++ R + E PT EELA+R+ + Sbjct: 365 YWWIRQTVRKAIFQHSRTIRLPENVYHTLGKVSEAKRSYIMEGNHNPTKEELAKRIGITT 424 Query: 492 DKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGL 551 ++ ++L +A+ P+SM+ + D+++ + D +E+P + +R +L L Sbjct: 425 VRLERLLYMARMPLSMQQTVWADQETTFQEITADIEVEIPELCVAKQLMRKHVLSLLNIL 484 Query: 552 TAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 RE K++R+R+GI+ +L E+G F +++ER+RQ+E++AL KL+ S L ++ Sbjct: 485 NPRERKIIRLRYGIEDGKKKSLSEIGSVFGLSKERVRQLESRALYKLKQCLASHGLEAYA 544 Query: 612 D 612 D Sbjct: 545 D 545 >UniRef50_O22455 Sigma factor 2 n=8 Tax=core eudicotyledons RepID=O22455_ARATH Length = 574 Score = 185 bits (470), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 93/237 (39%), Positives = 145/237 (61%) Query: 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 434 K +M+++N+RLVISIAK Y G+ DL+QEG GL++ +KF+ +G+KFSTYA WW Sbjct: 334 CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWW 393 Query: 435 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKI 494 I+QA+ +S++DQ+R IR+P HM+E ++ +Q+ E G+ P EE+AE + ++ Sbjct: 394 IKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRL 453 Query: 495 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAR 554 VL K P S++ IG +++ + I D D E +R VL L R Sbjct: 454 MAVLLSPKPPRSLDRKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTR 513 Query: 555 EAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 E +V+R RFG++ TL+E+G+ V+RER+RQIE+ A RKL++ R+ L+ +L Sbjct: 514 EKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYL 570 >UniRef50_C1SKA7 RNA polymerase sigma factor n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SKA7_9BACT Length = 301 Score = 185 bits (470), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 87/234 (37%), Positives = 153/234 (65%), Gaps = 1/234 (0%) Query: 379 MVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQA 438 ++ NL+ V+SIA +Y N GL D+I +GN+GL++A +F++ + KF +YA WWIRQ+ Sbjct: 69 LILCNLKFVVSIANRYRNTGLPIADIINQGNLGLVEAAKRFDHTKDVKFISYAVWWIRQS 128 Query: 439 ITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVL 498 I +++A+Q+ T+++P+ + K+N + ++ +++ REPT ELAE++ M E I VL Sbjct: 129 IIQALAEQSGTVKLPIKQAGILYKINGATEKLNKKLNREPTASELAEQLEMDEADIENVL 188 Query: 499 KIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKV 558 ++++ +S+E PI D ED D +E T ++ D +++L+ A D++ L RE+++ Sbjct: 189 RVSRNYLSLEAPIKDGEDRSFIDLLESGTKDIEED-IISKTLKTALDDIVDELDERESQI 247 Query: 559 LRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 + RFG++ TLEE+G+ D++RER+RQ+E +AL KLR + L+ FL+ Sbjct: 248 IEWRFGLNEEAPKTLEEIGELMDISRERVRQLETRALSKLRKKAMKNKLQDFLN 301 >UniRef50_A5UVI3 RNA polymerase sigma factor n=1 Tax=Roseiflexus sp. RS-1 RepID=A5UVI3_ROSS1 Length = 398 Score = 183 bits (465), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 103/266 (38%), Positives = 157/266 (59%), Gaps = 6/266 (2%) Query: 348 EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYT--NRGLQFLDLI 405 E ++GL+ Q RR+ E A ++ NLRLV IA +Y R L F DL+ Sbjct: 135 ELQSGLSSVQQYAAERRIKASE----EAIDTLMRCNLRLVAKIATRYMPYARHLTFDDLL 190 Query: 406 QEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNR 465 QEG IGL+KA+++F+ + STYA +WIRQ+I R++ADQ R +R+PVH++E +++L + Sbjct: 191 QEGRIGLLKAIERFDQNCRGRLSTYAVYWIRQSIQRALADQDRMVRLPVHIVEQLHRLRK 250 Query: 466 ISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIED 525 Q GREP ELA + + K+R + ++A+ S++ P+G D ++ LG+ I D Sbjct: 251 TCEQFRCIHGREPGDAELANALGVSLAKVRSLWRVAQHHTSIDRPVGADTNTFLGELIAD 310 Query: 526 TTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRE 585 E P + L A +VL L++RE +L R+G+ +TLEE+G+ F +TRE Sbjct: 311 DREEGPDFICEQQLLHAVLREVLGHLSSRERDILERRYGLIDGQTHTLEEIGQIFGLTRE 370 Query: 586 RIRQIEAKALRKLRHPSRSEVLRSFL 611 RIRQIE KAL++L +L+ FL Sbjct: 371 RIRQIERKALKRLNRGEYRRILQPFL 396 >UniRef50_D0Z2H8 RNA polymerase sigma factor n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0Z2H8_LISDA Length = 294 Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 100/242 (41%), Positives = 153/242 (63%), Gaps = 7/242 (2%) Query: 362 NRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY 421 +R+ +G+AK+ KK M+E+NLRLV+SIAKKY G+Q D+I EGNIGL+ AV+KF+ Sbjct: 40 SRKALVGDAKS---KKVMIESNLRLVVSIAKKYRGSGMQLSDMIDEGNIGLITAVEKFDP 96 Query: 422 RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPE 481 RG++FSTYATWWI+Q I R+I +QARTIR+PVH+ + IN + R +Q+++ EPT E Sbjct: 97 ERGFRFSTYATWWIKQTIERAIHNQARTIRLPVHVSKEINTILRTHKQLMKTNNSEPTHE 156 Query: 482 ELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSH---LGDFIEDTTLELPLDSATTE 538 E+A+ + + I +L +S + I EDS+ + FI D + P Sbjct: 157 EVADELDKSVEDISALLSYDAPVMSFDQTIS-SEDSNSQTMASFISDDSDNGPDAQIDKN 215 Query: 539 SLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKL 598 ++ T +L GL R+ ++L RFG+ TL++V ++ +TRERIRQ++ +L KL Sbjct: 216 DIQKLTLTMLEGLNPRDREILCRRFGLMGYEAQTLQQVAEEVGLTRERIRQLQVSSLNKL 275 Query: 599 RH 600 ++ Sbjct: 276 KN 277 >UniRef50_B7FPT1 Predicted protein n=2 Tax=Bacillariophyta RepID=B7FPT1_PHATR Length = 324 Score = 182 bits (462), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 96/244 (39%), Positives = 149/244 (61%), Gaps = 16/244 (6%) Query: 372 ARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYA 431 +R AK+ MV++N+RLV+SIA+KY+N G+ DL+QEG++GL +A +KFE ++G+KFSTYA Sbjct: 68 SREAKQRMVQSNMRLVVSIARKYSNVGVSLQDLVQEGSLGLSRAAEKFEPKKGFKFSTYA 127 Query: 432 TWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPE 491 +WWI+QA+ RSIA +RTIR+PVH+ +N++ ++ + +E+ R PT EE+AE + M Sbjct: 128 SWWIQQAVFRSIAYHSRTIRLPVHVHNLLNRVRKVRNNLQRELSRTPTNEEMAEELGMTL 187 Query: 492 DKIRKVLKIAKEPISMETP--------IGDDEDSHLGDFIEDTTLELPLDSATTES---- 539 K K+L++ K IS+ETP +G + LGD I ++ D +T E Sbjct: 188 QKYNKMLRLTKRSISLETPKYQSNPKDLGHESHDLLGDTISASS--ALFDESTPEKRVDR 245 Query: 540 --LRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRK 597 H++L L E +V+ R+G+ T+ V Q ++ +R E +ALRK Sbjct: 246 GIFHEDLHEMLEILDEDERRVICSRYGLSDGLTRTVTAVASQMKQSKAWVRSQECRALRK 305 Query: 598 LRHP 601 LR P Sbjct: 306 LRRP 309 >UniRef50_C5RI15 RNA polymerase sigma factor n=1 Tax=Clostridium cellulovorans 743B RepID=C5RI15_CLOCL Length = 427 Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 107/249 (42%), Positives = 146/249 (58%), Gaps = 6/249 (2%) Query: 371 KARRAKKEMVEANLRLVISIA---KKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKF 427 K +A +V AN +LV IA K+++ D+ Q G +GLMKA +KF+ +G +F Sbjct: 177 KREQALDNLVNANKKLVWEIALRYKQFSTVSFDNSDMYQAGVLGLMKAAEKFDISKGNQF 236 Query: 428 STYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERM 487 STYATWW+RQ+ITRSIAD + TIRIPVHM E I K + E GR + EELA + Sbjct: 237 STYATWWVRQSITRSIADYSTTIRIPVHMREKIIKYVSTENKFWNENGRVASKEELANLL 296 Query: 488 LMPEDKIR--KVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATH 545 + +++ +V + S++ PIG DE S LG+FI D P SA L+ Sbjct: 297 GISSEEVNYLQVYQDVANLTSLDIPIGADEGSFLGEFIPDDKHRSPEKSAEEGELKRELK 356 Query: 546 DVLAG-LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRS 604 ++ G LT +E ++L RFG +TLEE+G +VTRERIRQIEAKA+ KL++P Sbjct: 357 EICEGRLTPKETRILNFRFGFIDGRTHTLEEIGHVENVTRERIRQIEAKAISKLQNPKIL 416 Query: 605 EVLRSFLDD 613 E LR F D Sbjct: 417 ERLRDFYYD 425 >UniRef50_Q3JAH2 RNA polymerase sigma factor n=2 Tax=Nitrosococcus oceani RepID=Q3JAH2_NITOC Length = 303 Score = 180 bits (457), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 90/233 (38%), Positives = 148/233 (63%), Gaps = 1/233 (0%) Query: 373 RRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT 432 R A+ ++E+NLR+VI +A ++ NRGL +DLI+EGN+GL+ AV+KF G++FSTYA+ Sbjct: 69 REARNHIIESNLRIVIRMATRHINRGLPLMDLIEEGNLGLIDAVEKFNPELGFRFSTYAS 128 Query: 433 WWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPED 492 WWIRQAI R++ +Q RTIR+P+H+ + I + +R Q EP E+A+ + P + Sbjct: 129 WWIRQAIERALMNQTRTIRVPIHVFKKIRCYQKEARYFRQRYNIEPHLGEIAKLLHEPLE 188 Query: 493 KIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLT 552 +I++ L + IS++ P+ +D D L D + D P +A+ H+ L+ L Sbjct: 189 RIQRYLSLQAPEISLDDPLSEDTDDCLVDLLPDER-NNPAILWEIFDKKASIHNQLSQLP 247 Query: 553 AREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSE 605 R+ ++++ R+G+D TLEE+G++ +TRER+RQI+ A+++LR SE Sbjct: 248 ERQQEIIKCRYGLDGYEVTTLEEIGQKLGITRERVRQIQQTAIKRLRKIIESE 300 >UniRef50_C1A692 RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A692_GEMAT Length = 295 Score = 179 bits (455), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 97/239 (40%), Positives = 148/239 (61%), Gaps = 6/239 (2%) Query: 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 434 A +E+V+ NLR VIS+AKKY NRGL +DLI EGN+GL+ A KF+ +G KF +YA WW Sbjct: 58 ALQELVKRNLRFVISVAKKYQNRGLPLIDLIGEGNVGLLTAARKFDPDQGVKFISYAVWW 117 Query: 435 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKI 494 IRQAI S+A Q RT+R+P++ ++++ + S + Q++ REP+PEELA+ + D + Sbjct: 118 IRQAILSSLARQGRTVRVPLNRTADLSRIIKASEILRQKLRREPSPEELAQVTGLSVDVV 177 Query: 495 RKVLKIAKEPISMETPIGDDEDSHLGD-FIEDTTLELP--LDSATTESLRAATHDVLAGL 551 + + + + ++ P+ D D L + F+ D E+P + A L L+ L Sbjct: 178 QSLAALNTGDVRLDAPMDPDGDRSLIERFVAD---EMPDTEEEAMNRFLTDEIEQALSTL 234 Query: 552 TAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSF 610 R+AKVLR+ FG++ ++TLEE+G VTRER+RQ+ +AL++LR L SF Sbjct: 235 PPRDAKVLRLYFGLEGGREHTLEEIGSMLGVTRERVRQLRDRALKRLREGDVGRALSSF 293 >UniRef50_C7LZN3 RNA polymerase sigma factor n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LZN3_ACIFD Length = 294 Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 90/239 (37%), Positives = 146/239 (61%) Query: 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 434 A++ VE N+ LV+SIA++Y G+ DL+QEG IGL++A+D ++ RRG++FSTYATWW Sbjct: 56 ARERFVEGNMGLVVSIARRYVQPGISLDDLVQEGTIGLLRAIDLYDGRRGFRFSTYATWW 115 Query: 435 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKI 494 IRQAI +++ R + +P + + ++ R++ Q +GR+P+ ELA + E ++ Sbjct: 116 IRQAIAQALTRTRRDVVLPRGIAAELARVEVQRRELEQALGRQPSMAELAAASGIDELRV 175 Query: 495 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAR 554 R++ A+ +S++ +G++ D L D + D E ++ LR LA L R Sbjct: 176 RELQGYARSVLSLDQAVGEERDVTLADIVPDRDAEPIEETIEHADLRTVIAGALAHLEPR 235 Query: 555 EAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 E +VL RFG++ N ++LE+ F + RERIRQIEA+A+ +LR + VLR L+D Sbjct: 236 EREVLAFRFGLEGNEPHSLEDAAAYFGIARERIRQIEARAIARLRRGDLAPVLRRVLED 294 >UniRef50_Q39477 RNA polymerase sigma factor (Fragment) n=1 Tax=Cyanidium caldarium RepID=Q39477_CYACA Length = 609 Score = 176 bits (446), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 102/282 (36%), Positives = 160/282 (56%), Gaps = 40/282 (14%) Query: 371 KARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY 430 +A+RA++ +V ANLRLV+S+AK++TNRGL DLIQEG+IGL+K ++F+YR G++FSTY Sbjct: 329 RAQRARESLVAANLRLVVSVAKQFTNRGLSMQDLIQEGSIGLIKGAERFDYRTGFRFSTY 388 Query: 431 ATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMP 490 A WWIRQA+ R+IAD +R IRIP + + ++ R ++ +GR+PT ELA+ + + Sbjct: 389 AMWWIRQAMQRAIADTSRPIRIPSTITDLSVQIYRARLELSSTLGRDPTDAELADFLDIS 448 Query: 491 EDKIR--KVLKIAKEPISMETPI-------------------------------GDDEDS 517 +++ K+ +S++ P+ G Sbjct: 449 VQRLQDVKLYTNQSATVSLDAPVSRQVTNTCIKSKGTGDTDVFSSKADGKLSKNGYGSRH 508 Query: 518 HLGDFIEDTTLELPLDSATTESLRAAT------HDVLAGLTAREAKVLRMRFGIDMNTDY 571 LGDF T++ +S + E + A + L+ L E +V+RMRFG+D Sbjct: 509 KLGDFTLGDTVQTD-ESVSPEHMMADSLMRDDIECALSLLNPYEREVIRMRFGLDDGRMK 567 Query: 572 TLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 +++EV + V RIR+IEA+ALRKLRHPS +LR ++ + Sbjct: 568 SVDEVCAYYCVQTSRIRRIEARALRKLRHPSVWHMLRDYISN 609 >UniRef50_A3RRA4 RNA polymerase sigma factor rpoD n=1 Tax=Ralstonia solanacearum UW551 RepID=A3RRA4_RALSO Length = 504 Score = 176 bits (446), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 89/168 (52%), Positives = 125/168 (74%), Gaps = 4/168 (2%) Query: 8 QLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLML 67 +LK L+ GK +GYLTYAE+NDHLP+D+VD++ ++ ++ +ND+GI V E+APDA+ L+L Sbjct: 260 KLKALIKLGKSRGYLTYAEINDHLPDDMVDAESMDTLVATLNDIGIAVYEQAPDAETLLL 319 Query: 68 AEN----TADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRI 123 +N T +E+A E A LS+V+SE GRTTDPVRMYMREMGTVELLTREGEI+IAKRI Sbjct: 320 NDNAPSVTTEEEAEEEAEAALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRI 379 Query: 124 EDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAE 171 E G+ + +++ P I+ +L +RV +EA++ + I G +D NAE Sbjct: 380 EAGLKDMVMAISACPVTISEILAMGERVANDEAKIDEYIDGLIDLNAE 427 >UniRef50_B4U904 RNA polymerase sigma factor n=5 Tax=Aquificales RepID=B4U904_HYDS0 Length = 311 Score = 175 bits (444), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 100/303 (33%), Positives = 168/303 (55%), Gaps = 37/303 (12%) Query: 342 QKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQF 401 Q ++++ LT ++ K+ +R G+ +A +A +VEANLR V+S+AK+Y G+ Sbjct: 12 QYMKRVSSVKLLTPQEEKEFAKRAKAGDKEALKA---LVEANLRFVVSVAKQYMGYGIPL 68 Query: 402 LDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPV---HMIE 458 +LI GN+GL++A +F+ + KF +YA WW+RQAI ++++ Q +RIPV H+I Sbjct: 69 SELIAAGNLGLLEAATRFDPDKNVKFISYAVWWVRQAIMQALSQQTGAVRIPVKHSHLIS 128 Query: 459 T------------------------INKLNRISRQMLQEMGREPTPEELAERML------ 488 INK N I R+ +E G PT EEL + M Sbjct: 129 AVGLAYNELLKELEREPTYKEIADYINKKN-IIREFKKETGFAPTEEELEQSMTQEHKYT 187 Query: 489 MPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVL 548 + E+ ++K L+I K P+S++TP+GD+ D+ D + + + + + L HD++ Sbjct: 188 VTEEDVKKCLQICKTPLSLDTPVGDNPDTLFVDLLSISDTDEIEEGVIKDVLEKELHDII 247 Query: 549 AGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLR 608 + L +E KVL +R+G++ N TL E+G ++RER+RQ+E +A++KLR + L+ Sbjct: 248 SKLPEKERKVLELRYGLNGNEPLTLREIGDALGISRERVRQLETRAIKKLRSFALKRHLK 307 Query: 609 SFL 611 FL Sbjct: 308 DFL 310 >UniRef50_B8C8Z6 Predicted protein (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8C8Z6_THAPS Length = 338 Score = 174 bits (440), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 103/308 (33%), Positives = 173/308 (56%), Gaps = 31/308 (10%) Query: 329 KLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVI 388 K D+ EE+ R Q T T+ +K RR ++RAK ++EANLRLVI Sbjct: 37 KRRDLEEELLRP-PTFAQWASATNHTVPSLKQQIRR-------SQRAKAALIEANLRLVI 88 Query: 389 SIAKKYTNRG-----------LQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ 437 ++A++ + +QF D Q+G IGL +A +KF+ G++FSTYA WWI++ Sbjct: 89 TVARQAVKKSPFRSSSHAASSVQFQDACQQGIIGLTRATEKFDPELGFRFSTYAIWWIQK 148 Query: 438 AITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKV 497 + +++ +Q+RT+R+P I+ IN + R ++ E+GR P+ +E+AE+ + +K+ Sbjct: 149 EVAKNVNEQSRTVRVPGSAIKKINDIRIQERVLMNELGRRPSDDEVAEKCGLTVEKLNFY 208 Query: 498 LKIAKEPISMETPI------------GDDEDSHLGDFIEDTTLELPLDSATTESLRAATH 545 + AKE S++ I GDD+ + F+ DT P + + ++ Sbjct: 209 RQSAKEVKSLDKKIDSRTGKGSAASGGDDDGKTMEIFVRDTEHPSPSELIDQQMMQQDIR 268 Query: 546 DVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSE 605 ++ L+ RE V+R+RFG+D TL ++G++F V +ERI++IEA+AL KLR PSRS Sbjct: 269 RLVKTLSPREQAVIRLRFGLDDGKPQTLGDIGEKFGVEKERIKKIEARALLKLRQPSRSS 328 Query: 606 VLRSFLDD 613 V++ ++ D Sbjct: 329 VVKCYVSD 336 >UniRef50_Q1PZV7 RNA polymerase sigma factor n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZV7_9BACT Length = 256 Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 96/251 (38%), Positives = 159/251 (63%), Gaps = 7/251 (2%) Query: 353 LTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL 412 LT E+ +I R+++ G+A+AR +++++ANLRLV+SIAK++ NRG FLDLI+EGN+GL Sbjct: 2 LTFEEELEIARKVAKGDAEAR---EKLIKANLRLVVSIAKEFVNRGFSFLDLIEEGNLGL 58 Query: 413 MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQ 472 ++AV+ F+ G +FSTYATWWI+QAI R+IA++AR IRIP +M++ I+++ S +L+ Sbjct: 59 IRAVEDFDITTGNRFSTYATWWIKQAIRRAIANKARIIRIPSYMLQRISQMKHASSGLLK 118 Query: 473 EMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPI--GDDEDSHLGDFIEDTTLEL 530 + R P+ +E+A + + ++ + + S++ P+ G D L D + L Sbjct: 119 KHERSPSEQEIAAEIDITAQNVKNIELSLQSMTSLDAPLVSGADIIWALSDITPNGK-TL 177 Query: 531 PLDSATTESLRAAT-HDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQ 589 P + E+ T +L L R A V+ MR+G+ TLE++ K ++RER+RQ Sbjct: 178 PPEEGLEETYEKETLKKLLDTLDKRAATVITMRYGLVDGESRTLEDISKILKISRERVRQ 237 Query: 590 IEAKALRKLRH 600 IE + ++KL + Sbjct: 238 IEKETIQKLHY 248 >UniRef50_Q3AYF6 Possible type II alternative RNA polymerase sigma factor n=26 Tax=Cyanobacteria RepID=Q3AYF6_SYNS9 Length = 309 Score = 171 bits (432), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 94/235 (40%), Positives = 148/235 (62%), Gaps = 7/235 (2%) Query: 371 KARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY 430 + RAK +M+ ANLRLV+++AK+Y +GL LDLIQEG +GL +AV+K++ RG++FSTY Sbjct: 63 RGERAKNQMITANLRLVVNLAKRYQGKGLDLLDLIQEGTLGLTRAVEKYDPTRGHRFSTY 122 Query: 431 ATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMP 490 A WWIRQ + R+++ Q+RTIRIPV++ E + KL +++Q G T E+LAE M +P Sbjct: 123 AYWWIRQGLNRALSTQSRTIRIPVNVNEKLTKLRAAKARIMQRNGLTATGEQLAEFMNVP 182 Query: 491 EDKIRKVL--KIAKEPISMETPIGDDED-SHLGDFIEDTTLELPLDSATTESLRAATHDV 547 ++ +L ++ +S++ + D S L D + + P++ A A+ + Sbjct: 183 LTEVEDLLACELRSVTVSLQGIVKSKSDPSELVDILPSDEIP-PMERAEIAERSASVWAL 241 Query: 548 L--AGLTAREAKVLRMRFGIDMNTDY-TLEEVGKQFDVTRERIRQIEAKALRKLR 599 L A LT +E KV+ +RFG+D ++ TL EV + + +RE RQ+ +ALRKLR Sbjct: 242 LSKANLTPKEHKVVTLRFGLDGTNEWRTLAEVARHMNCSREYCRQVVQRALRKLR 296 >UniRef50_Q47D27 RNA polymerase sigma factor n=1 Tax=Dechloromonas aromatica RCB RepID=Q47D27_DECAR Length = 309 Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 88/225 (39%), Positives = 138/225 (61%) Query: 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 434 A++ M+E NLRLV++IAK Y NRG+ LDLI+EGN+GL+ A++KF+ RG++FSTYATWW Sbjct: 71 ARQRMIEHNLRLVVNIAKHYLNRGIPLLDLIEEGNLGLIHALEKFDPERGFRFSTYATWW 130 Query: 435 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKI 494 IRQ I R I +Q+RTIR+PVH+++ IN + R R + R+ T E +A + P + Sbjct: 131 IRQNIERGIMNQSRTIRLPVHIVKEINVVLRAMRHLESADKRDSTVERIALLIDRPVADV 190 Query: 495 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAR 554 R++L + + S++ P+ D + + + I D P + + + D L LT R Sbjct: 191 RRILSLNEHIASLDAPLEIDPNHTMAEVIADDGESDPESLLQSSEVGSLVDDWLEQLTER 250 Query: 555 EAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLR 599 + V+ R+G+ TL+ + +TRER+RQI+ + L +LR Sbjct: 251 QRSVIERRYGLSGADLATLDVIACDLGLTRERVRQIQMEGLDRLR 295 >UniRef50_C7LZI2 RNA polymerase sigma factor n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LZI2_ACIFD Length = 302 Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 86/227 (37%), Positives = 143/227 (62%), Gaps = 7/227 (3%) Query: 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 434 AK EMV ANLRLV+ A++Y +RG++ DLIQEG GL++AV+KF++RRG+KFSTYATWW Sbjct: 69 AKAEMVAANLRLVVHWARRYQDRGVELADLIQEGTFGLIRAVEKFDWRRGFKFSTYATWW 128 Query: 435 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKI 494 +RQ++ R++ + + IR+P+ E +++ ++R++ ++GR PT EE+A + ++ Sbjct: 129 VRQSLQRAVHNHGQAIRLPMEAAERSRRVDNVTRELAADLGRAPTEEEIAMAANLSASQL 188 Query: 495 RKVLKIAKEPISMETPIGDDEDSHLGDFI--EDTTLELPLD-SATTESLRAATHDVLAGL 551 V A+ S++ +G + ++ LGD + +DT+ E +D S + E LR A + L Sbjct: 189 ADVRHAARVVASLDQAVGPEGETSLGDLVVAQDTSFEEEVDESISREMLRRAVEE----L 244 Query: 552 TAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKL 598 E +V+ +RFG+ + +LE + + R R++EA AL KL Sbjct: 245 DELERQVVTLRFGLQGDRPASLEATARILGIGPRRARRLEASALAKL 291 >UniRef50_A9SW01 Plastid sigma factor SIG1 n=2 Tax=Physcomitrella patens RepID=A9SW01_PHYPA Length = 677 Score = 169 bits (427), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 100/265 (37%), Positives = 160/265 (60%), Gaps = 18/265 (6%) Query: 358 VKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD 417 V D+ R++ GEA+ R K MV ANLRLV+S+AK+Y + GL+ DLIQEG+IGL++ V+ Sbjct: 416 VGDLVRKL--GEAEWARDK--MVMANLRLVVSVAKQYHSFGLEMADLIQEGSIGLLRGVE 471 Query: 418 KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE 477 KF++ RGYK STY WWIRQ +TR+IAD +RT+R+PVH+ +T+ ++ + +L E G Sbjct: 472 KFDHTRGYKLSTYVHWWIRQGVTRAIADHSRTVRLPVHVHDTLGRIRKAKSTLLSE-GCT 530 Query: 478 PTPEELAERMLMPEDKIRKVLKIAKEPISMETPI-------GDDEDSHLGDFIEDTTLEL 530 + +E++E + KI+ L++ K+ +S++ I GD E H + D +E Sbjct: 531 ASVQEISEATNLTGTKIKNTLQVTKKLVSLDKEIGRNTLQSGDGETLH--SLVADRDIEN 588 Query: 531 PLDSATTESLRAATHDVL--AGLTAREAKVLRMRFGIDM--NTDYTLEEVGKQFDVTRER 586 + L D L + L RE ++R+ +G+ + +LE + ++ V+RER Sbjct: 589 QPWTIVERMLMKDDVDKLLTSQLGPRERDIVRLHYGVGREDGSVMSLESISYRYGVSRER 648 Query: 587 IRQIEAKALRKLRHPSRSEVLRSFL 611 +RQ+E A+RKL+ SR + L +L Sbjct: 649 VRQLETAAMRKLQIKSREQGLDRYL 673 >UniRef50_B7G4Z9 Predicted protein (Fragment) n=2 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7G4Z9_PHATR Length = 319 Score = 168 bits (426), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 97/260 (37%), Positives = 155/260 (59%), Gaps = 22/260 (8%) Query: 372 ARRAKKEMVEANLRLVISIAKKY---------TNRG----LQFLDLIQEGNIGLMKAVDK 418 ++A+ +V ANL LV ++AK+ RG L DLIQEG +GLMKA ++ Sbjct: 62 GQQARAALVAANLGLVTALAKRQLSTLQTATEAGRGVGTILTLQDLIQEGTLGLMKAAER 121 Query: 419 FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP 478 FE RG++FSTYATWW+RQ I +S++D +RTIR+P H+ T+ ++ + ++ + G E Sbjct: 122 FEPERGWRFSTYATWWVRQRILKSVSDSSRTIRLPAHVHGTLQRIQK-AKAWFRAHGEEA 180 Query: 479 TPEELAERMLMPEDKIRKVLKIAKEPISMETPI------GDDEDSHLGDFIEDTTLELPL 532 T LA+ + +P +K+R ++ +S+ETP+ D+ LGD + + P Sbjct: 181 TLSSLAQYLELPVEKVRLYTDSSRNVMSLETPLKGRSAFKDENTRTLGDTLASDE-KTPE 239 Query: 533 DSATTESLRA-ATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIE 591 ++ ++LR H ++ LT E VLR RFG++ T ++LEE KQ ++R+RIR +E Sbjct: 240 ENVEAQALRLDLEHVMIKVLTDVEQNVLRRRFGLEDGTSWSLEETAKQLGMSRDRIRLVE 299 Query: 592 AKALRKLRHPSRSEVLRSFL 611 A+AL KLR P ++ LRS++ Sbjct: 300 ARALNKLRRPQQNYKLRSYM 319 >UniRef50_B7KLN9 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7KLN9_CYAP7 Length = 308 Score = 168 bits (426), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 92/228 (40%), Positives = 140/228 (61%), Gaps = 6/228 (2%) Query: 372 ARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYA 431 ++AK ++V+ NLRLVI++AKKY RGL F DL+QEGNIGL++A + FE +GYKFSTYA Sbjct: 80 GQQAKNQLVQGNLRLVINLAKKYLGRGLSFEDLLQEGNIGLIRAAELFEPSKGYKFSTYA 139 Query: 432 TWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPE 491 WWIRQ I R+I + ARTIR+PVH+I +N++ + ++ ++GR PT +E+A + M Sbjct: 140 YWWIRQQIIRAINNSARTIRLPVHIIARLNRIKKTQHKLAAQLGRTPTVQEIATSLQMSA 199 Query: 492 DKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGL 551 +I K ++A++ IS+ T + + L D I D + P D + + L Sbjct: 200 QEIEKYREVAQKTISLSTIVDEQGRETLQDLIADPNPQ-P-DFLERVFSYEQILEKMETL 257 Query: 552 TAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLR 599 R +L+ R + + TLE +G +++ER+RQI KAL +LR Sbjct: 258 PPRYQDILKKR----IYEEQTLEAIGTSTKLSKERVRQIFQKALSRLR 301 >UniRef50_Q7XXT0 Plastid sigma factor 2A n=13 Tax=Poaceae RepID=Q7XXT0_ORYSJ Length = 564 Score = 167 bits (424), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 87/237 (36%), Positives = 144/237 (60%), Gaps = 1/237 (0%) Query: 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 434 K MV +N+RLVISIA+++ G++ DLIQEG GL++ +KF+ +G++FSTY+ WW Sbjct: 323 CKNRMVTSNVRLVISIAREFEGPGMELYDLIQEGMQGLIRGAEKFDASKGFRFSTYSHWW 382 Query: 435 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKI 494 I+QA+ +S+++Q++ R+P HM+E ++ +++ +++ R PT EE+A MP ++ Sbjct: 383 IKQAMRKSVSEQSQIFRLPAHMVEASYRVKECIKRLRRKLKRRPTNEEIAADTGMPIKRV 442 Query: 495 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAR 554 + + K +S+++ IG D + D T E + S++ H L LT R Sbjct: 443 EAAVNLPKYSVSLDSKIGST-DMTYQEVTADPTAETAEEMLNRLSMKRDVHKALDTLTTR 501 Query: 555 EAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 E +V+ +RFG++ TL+E+G V+RERIRQIE+ A RKLR R L+ +L Sbjct: 502 ERQVVTLRFGLEDGRIRTLQEIGNTMGVSRERIRQIESAAFRKLRSKKRVNALKDYL 558 >UniRef50_Q3M2G3 Sigma-70 n=1 Tax=Anabaena variabilis ATCC 29413 RepID=Q3M2G3_ANAVT Length = 314 Score = 167 bits (424), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 98/283 (34%), Positives = 172/283 (60%), Gaps = 23/283 (8%) Query: 333 VSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAK 392 + E++H+ L +QQ+ + G + +V I R +G+ +AK++M+ ANLRLV++IAK Sbjct: 46 LEEQLHQQL-NIQQLAADMGKSETEVFQILR---LGQ----KAKEKMIAANLRLVVAIAK 97 Query: 393 KYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRI 452 KY L+FLDL+QEG+IGL KAV++F+ RGYKFST A WWIRQ IT++IA+++ TIR Sbjct: 98 KYRWSQLEFLDLVQEGSIGLQKAVERFDPNRGYKFSTCAYWWIRQEITKAIANKSTTIRT 157 Query: 453 PVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIG 512 P HM + + KL ++ R++++ +GREP E+AE + +++R+ L + P+S++ P+G Sbjct: 158 PSHMNDRLIKLKKVQRELVKILGREPNIAEIAEFAELEPNQVRECLIAFRHPLSLDRPMG 217 Query: 513 DDEDSHLGDFIEDTTLELPLDSATTES------LRAATHDVLAGLTAREAKVLRMRFGID 566 +++ DF+E LP D + LR + L L + +VL +RFG+ Sbjct: 218 QEDEV---DFLEI----LPADGTSPNEYLDEGFLRQDLANCLITLKPLQKQVLMLRFGLG 270 Query: 567 MNTDYTLEEVGKQFDVTRERIRQIEAKALRKL--RHPSRSEVL 607 + +++ ++ ++ + ++ + +A++ L + P E L Sbjct: 271 SVDKLSTKQIAERLNIKQAKVGTTQKQAIKVLHRQQPQMREYL 313 >UniRef50_P77996 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacterium thermosulfurigenes RepID=P77996_THETU Length = 261 Score = 167 bits (424), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 95/249 (38%), Positives = 152/249 (61%), Gaps = 6/249 (2%) Query: 353 LTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL 412 LT E+ K + R+ G+ A K +VE N+RLV +A + G++F DL+QEG IGL Sbjct: 5 LTKEEEKILFERLRNGDESA---KDVLVECNIRLVDKVAAGFLKSGVEFDDLVQEGLIGL 61 Query: 413 MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQ 472 + A+DKF++ +GYKFSTYATW+I+Q++ R I + + IR+P+H+ E IN++ + + Q Sbjct: 62 LTAIDKFDHTKGYKFSTYATWYIQQSMRRYIGNYGKIIRLPIHINEKINRILKARYLIEQ 121 Query: 473 EMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDE-DSHLGDFIEDTTLELP 531 + G T EE++ E++I L A + IS+ + D+ D+ L +FI+D T+++ Sbjct: 122 KKGSLATTEEISRLTGYTEEEIEGYLSYATDVISLNQYVNDERVDAELINFIQDDTIDVE 181 Query: 532 LDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIE 591 + A + ++ +L L RE +L+MRFG N TL E+G F +TRERIRQI+ Sbjct: 182 -EMAIEKEIKKEIRKILDSLPERERMILKMRFGFGCNLK-TLTEIGNIFGLTRERIRQIQ 239 Query: 592 AKALRKLRH 600 +++LRH Sbjct: 240 NNTIKELRH 248 >UniRef50_C4ZMT1 RNA polymerase sigma factor n=1 Tax=Thauera sp. MZ1T RepID=C4ZMT1_THASP Length = 590 Score = 167 bits (422), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 74/120 (61%), Positives = 96/120 (80%), Gaps = 3/120 (2%) Query: 359 KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK 418 +DI +++ A + M+++NLRLVISIAKKYT+ G FLDLIQEGN+GLMKAV+K Sbjct: 459 RDIGAAVAVALNSALDHRNRMIKSNLRLVISIAKKYTHTGFPFLDLIQEGNLGLMKAVEK 518 Query: 419 FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP 478 F+YRRG+KFSTYATWWIRQAITR IADQ R +R+PVHM+E+INK++R+ R++ GR P Sbjct: 519 FDYRRGFKFSTYATWWIRQAITRGIADQQRLVRVPVHMVESINKVSRVLREL---EGRAP 575 Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 59/226 (26%), Positives = 116/226 (51%), Gaps = 26/226 (11%) Query: 7 SQLKLLVTRGKEQGYLTYAEVNDHLPE--DIVDSDQIEDIIQMINDMGIQVMEEAPDADD 64 ++L+LL+ +G G++ +++ + + + ++D E I ++I D+G+ + + +P Sbjct: 205 ARLRLLLMQGLSVGFVNRSDIVEACADATESHEADLEERIERLIGDLGLHIEDVSPS--- 261 Query: 65 LMLAENTA--DEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKR 122 L E+ A EDA E A + L + S DP+++Y+RE+G + LTRE E IA+ Sbjct: 262 FGLDEHGAAESEDACEDALEYLRDICSG---DNDPLKLYIREVGPHQALTREDEAFIARA 318 Query: 123 IEDGINQVQCSVAEYPEAITYLLEQYD---RVEAEEARLSDLITGFVDPNAEEDLAPTAT 179 +E+G++Q ++A A+ +++ D R EA+ + D G N E++ +A Sbjct: 319 MEEGVSQAIRTIASCKAALDQIIDAGDAVCRGEADAGSMFDRAAG----NPEDEPHESAF 374 Query: 180 HVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELR 225 + S + +D++++ DD+ + PEL A+LR Sbjct: 375 GLSSTM--------QDDEQDQASDDAGRQQMQLQPELG-AALADLR 411 >UniRef50_C9B9Y0 RNA polymerase sigma factor n=1 Tax=Enterococcus faecium 1,231,501 RepID=C9B9Y0_ENTFC Length = 383 Score = 167 bits (422), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 99/238 (41%), Positives = 140/238 (58%), Gaps = 8/238 (3%) Query: 379 MVEANLRLVISIAK---KYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 435 +V+AN RLV+ IA+ KY L DL Q G IGL+KA DKF+ + Y FSTYAT+WI Sbjct: 133 LVKANRRLVLKIAQRYNKYLTSSLDIDDLEQFGMIGLLKAADKFDLSKEYAFSTYATYWI 192 Query: 436 RQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIR 495 RQ+I+R I D + T+R+PVH+ E INKLNR+ +M+ L E M + E++ Sbjct: 193 RQSISRGIMDTSLTVRLPVHIFEKINKLNRLEARMMTNSSTTDISSILKE-MDISEEQYY 251 Query: 496 KVLKIAKEPI---SMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLT 552 +L I + S++TPIG D D+ +GD + D ++ + LR + L Sbjct: 252 DLLAIRSTYLSLPSLDTPIGIDGDATIGDMLPDNNYDIE-EVIDLGFLREDIKKSMTYLK 310 Query: 553 AREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSF 610 +E +VL +RFG D TLEE+G F VTRERIRQIEAKA+RK++ E++ + Sbjct: 311 EKEREVLYLRFGFDGEGRKTLEEIGNIFGVTRERIRQIEAKAIRKMKKKVNRELISDY 368 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q87DT7 RNA polymerase sigma factor rpoD n=599 Tax=cellu... 636 0.0 UniRef50_Q1QBP8 RNA polymerase sigma factor n=8 Tax=Gammaproteob... 611 e-173 UniRef50_Q83BB6 RNA polymerase sigma factor rpoD n=106 Tax=Prote... 610 e-173 UniRef50_D1TN62 RNA polymerase sigma factor n=2 Tax=Burkholderia... 580 e-164 UniRef50_P52324 RNA polymerase sigma factor rpoD n=83 Tax=Bacter... 558 e-157 UniRef50_A9W0B8 RNA polymerase sigma factor n=15 Tax=Alphaproteo... 556 e-156 UniRef50_Q13K37 RNA polymerase sigma factor n=1 Tax=Burkholderia... 554 e-156 UniRef50_C6XRI0 RNA polymerase sigma factor n=1 Tax=Hirschia bal... 538 e-151 UniRef50_A0L5T1 RNA polymerase sigma factor n=3 Tax=Bacteria Rep... 537 e-151 UniRef50_P33452 RNA polymerase sigma factor rpoD n=130 Tax=Prote... 534 e-150 UniRef50_Q0EWY1 RNA polymerase sigma factor n=2 Tax=Bacteria Rep... 526 e-147 UniRef50_P46400 RNA polymerase sigma factor rpoD n=5 Tax=Alphapr... 522 e-146 UniRef50_D1ASA0 RNA polymerase sigma factor n=9 Tax=Anaplasmatac... 505 e-141 UniRef50_D0LP36 RNA polymerase sigma factor n=9 Tax=Bacteria Rep... 504 e-141 UniRef50_P17531 RNA polymerase sigma factor rpoD n=70 Tax=Bacter... 503 e-141 UniRef50_Q1RKH7 RNA polymerase sigma factor rpoD n=19 Tax=Bacter... 499 e-139 UniRef50_Q3J9H0 RNA polymerase sigma factor n=2 Tax=Nitrosococcu... 496 e-138 UniRef50_P61540 RNA polymerase sigma factor rpoD n=20 Tax=Bacter... 486 e-136 UniRef50_B0U099 RNA polymerase sigma factor n=18 Tax=Francisella... 484 e-135 UniRef50_Q5GSP3 RNA polymerase sigma factor n=6 Tax=Wolbachia Re... 482 e-134 UniRef50_C1F1D9 RNA polymerase sigma factor n=3 Tax=Acidobacteri... 471 e-131 UniRef50_A9F3S6 RNA polymerase sigma factor n=21 Tax=Bacteria Re... 471 e-131 UniRef50_C0R506 RNA polymerase sigma factor n=4 Tax=Wolbachia Re... 467 e-130 UniRef50_Q1LEA3 RNA polymerase sigma factor n=1 Tax=Cupriavidus ... 464 e-129 UniRef50_C1SK63 RNA polymerase sigma factor n=1 Tax=Denitrovibri... 461 e-128 UniRef50_A4JT57 RNA polymerase sigma factor n=14 Tax=Burkholderi... 460 e-128 UniRef50_B3CQ43 RNA polymerase sigma factor n=2 Tax=Orientia tsu... 454 e-126 UniRef50_A2WDQ1 RNA polymerase sigma factor n=10 Tax=Proteobacte... 451 e-125 UniRef50_A8ZUC3 RNA polymerase sigma factor n=10 Tax=Deltaproteo... 449 e-124 UniRef50_B2V7P9 RNA polymerase sigma factor n=20 Tax=Bacteria Re... 447 e-124 UniRef50_C0R030 RNA polymerase sigma factor n=2 Tax=Brachyspira ... 440 e-122 UniRef50_Q2GE94 RNA polymerase sigma factor n=2 Tax=Neorickettsi... 428 e-118 UniRef50_C0A975 RNA polymerase sigma factor n=1 Tax=Opitutaceae ... 424 e-117 UniRef50_B2UM02 RNA polymerase sigma factor n=7 Tax=Verrucomicro... 422 e-116 UniRef50_Q9Z7F0 RNA polymerase sigma factor rpoD n=15 Tax=Chlamy... 410 e-112 UniRef50_O83506 RNA polymerase sigma factor rpoD n=11 Tax=Bacter... 403 e-111 UniRef50_B2KBW8 RNA polymerase sigma factor n=2 Tax=Elusimicrobi... 400 e-110 UniRef50_C8R064 RNA polymerase sigma factor n=1 Tax=Desulfurivib... 377 e-103 UniRef50_A6G972 RNA polymerase sigma factor n=2 Tax=Bacteria Rep... 377 e-102 UniRef50_A6CE36 RNA polymerase sigma factor n=6 Tax=Planctomycet... 377 e-102 UniRef50_Q02AX1 RNA polymerase sigma factor n=2 Tax=Acidobacteri... 373 e-101 UniRef50_Q9ZMY3 RNA polymerase sigma factor rpoD n=59 Tax=Epsilo... 371 e-101 UniRef50_Q6AQ51 RNA polymerase sigma factor n=1 Tax=Desulfotalea... 371 e-101 UniRef50_P52323 RNA polymerase sigma factor rpoD n=32 Tax=Borrel... 369 e-100 UniRef50_A1S281 RNA polymerase sigma factor n=7 Tax=Bacteria Rep... 355 2e-96 UniRef50_D2R2I8 RNA polymerase, sigma 70 subunit, RpoD subfamily... 355 2e-96 UniRef50_Q1NY91 RNA polymerase sigma factor n=1 Tax=delta proteo... 349 2e-94 UniRef50_C4G0D3 RNA polymerase sigma factor n=1 Tax=Abiotrophia ... 345 4e-93 UniRef50_B9CNX8 RNA polymerase sigma factor n=3 Tax=Actinobacter... 342 2e-92 UniRef50_P52328 RNA polymerase sigma factor rpoD n=191 Tax=Bacte... 342 3e-92 UniRef50_Q3AEW8 RNA polymerase sigma factor n=9 Tax=Clostridia R... 340 8e-92 UniRef50_P52331 RNA polymerase sigma factor rpoD n=60 Tax=Bacter... 340 9e-92 UniRef50_Q04506 RNA polymerase sigma factor rpoD n=15 Tax=Bacter... 340 1e-91 UniRef50_B8FTY1 RNA polymerase sigma factor n=3 Tax=Bacteria Rep... 339 2e-91 UniRef50_P0A4J0 RNA polymerase sigma factor rpoD n=39 Tax=Bacter... 339 2e-91 UniRef50_B0TG57 RNA polymerase sigma factor n=11 Tax=Bacteria Re... 338 4e-91 UniRef50_C9KNX0 RNA polymerase sigma factor n=1 Tax=Mitsuokella ... 338 4e-91 UniRef50_D1C1P9 RNA polymerase sigma factor n=6 Tax=Chloroflexi ... 337 6e-91 UniRef50_Q99TT5 RNA polymerase sigma factor rpoD n=78 Tax=Firmic... 337 6e-91 UniRef50_UPI0001AF1456 RNA polymerase sigma factor n=2 Tax=Strep... 336 2e-90 UniRef50_Q47RL2 RNA polymerase sigma factor n=3 Tax=Bacteria Rep... 333 1e-89 UniRef50_A7NGG2 RNA polymerase sigma factor n=15 Tax=Chloroflexi... 333 1e-89 UniRef50_P0A603 RNA polymerase sigma factor rpoD n=66 Tax=Actino... 332 2e-89 UniRef50_B9L102 RNA polymerase sigma factor n=2 Tax=Bacteria Rep... 332 2e-89 UniRef50_A5IMD4 RNA polymerase sigma factor n=24 Tax=Bacteria Re... 331 4e-89 UniRef50_P77994 RNA polymerase sigma factor rpoD n=6 Tax=Thermot... 331 5e-89 UniRef50_A5UQ16 RNA polymerase sigma factor n=3 Tax=Chloroflexi ... 331 6e-89 UniRef50_D2RM33 RNA polymerase, sigma 70 subunit, RpoD subfamily... 330 1e-88 UniRef50_C4LJ07 RNA polymerase sigma factor n=115 Tax=Bacteria R... 329 2e-88 UniRef50_C7GZY7 RNA polymerase sigma factor n=1 Tax=Eubacterium ... 326 1e-87 UniRef50_D1CB24 RNA polymerase sigma factor n=1 Tax=Thermobaculu... 323 1e-86 UniRef50_P18182 RNA polymerase principal sigma factor hrdA n=6 T... 322 2e-86 UniRef50_C7NC70 RNA polymerase sigma factor n=6 Tax=Bacteria Rep... 321 3e-86 UniRef50_C8NZE6 RNA polymerase sigma factor n=1 Tax=Erysipelothr... 320 7e-86 UniRef50_P43344 RNA polymerase sigma factor rpoD (Fragment) n=31... 317 7e-85 UniRef50_Q0RDY7 RNA polymerase sigma factor n=5 Tax=Actinomyceta... 316 2e-84 UniRef50_A5UPS4 RNA polymerase sigma factor n=4 Tax=Chloroflexac... 316 2e-84 UniRef50_B8GCU9 RNA polymerase sigma factor n=5 Tax=Bacteria Rep... 315 2e-84 UniRef50_D2R6R0 RNA polymerase, sigma 70 subunit, RpoD subfamily... 315 4e-84 UniRef50_Q3AWQ6 RNA polymerase sigma factor n=5 Tax=Chroococcale... 315 4e-84 UniRef50_P27785 RNA polymerase sigma factor rpoD n=102 Tax=Bacte... 313 9e-84 UniRef50_A8S2D4 RNA polymerase sigma factor n=2 Tax=Clostridium ... 311 4e-83 UniRef50_Q2J784 RNA polymerase sigma factor n=6 Tax=Actinomyceta... 309 2e-82 UniRef50_B4DC14 RNA polymerase sigma factor n=1 Tax=Chthoniobact... 309 3e-82 UniRef50_D1VBD5 RNA polymerase sigma factor n=1 Tax=Frankia sp. ... 308 4e-82 UniRef50_Q2JLG8 RNA polymerase sigma factor n=3 Tax=Cyanobacteri... 306 1e-81 UniRef50_C1CW22 RNA polymerase sigma factor n=3 Tax=Deinococci R... 306 2e-81 UniRef50_Q1ATP3 RNA polymerase sigma factor n=2 Tax=Rubrobacter ... 306 2e-81 UniRef50_B5YKM1 RNA polymerase sigma factor n=1 Tax=Thermodesulf... 306 2e-81 UniRef50_B7K1V2 RNA polymerase sigma factor n=13 Tax=cellular or... 306 2e-81 UniRef50_Q1J156 RNA polymerase sigma factor n=13 Tax=Bacteria Re... 305 4e-81 UniRef50_C5B6H5 RNA polymerase sigma factor n=1 Tax=Methylobacte... 305 4e-81 UniRef50_P38023 RNA polymerase sigma factor rpoD1 n=7 Tax=cellul... 303 2e-80 UniRef50_B1WS32 RNA polymerase sigma factor n=5 Tax=Chroococcale... 302 2e-80 UniRef50_D2AWC8 RNA polymerase sigma factor n=3 Tax=Streptospora... 302 3e-80 UniRef50_C9LM97 RNA polymerase sigma factor n=1 Tax=Dialister in... 301 3e-80 UniRef50_P26683 RNA polymerase sigma factor rpoD n=19 Tax=cellul... 301 7e-80 UniRef50_C7H329 RNA polymerase sigma factor n=2 Tax=Faecalibacte... 300 1e-79 UniRef50_D2ML80 RNA polymerase, sigma 70 subunit, RpoD family n=... 299 2e-79 UniRef50_P74565 RNA polymerase sigma factor rpoD n=23 Tax=cellul... 299 3e-79 UniRef50_A9AU99 RNA polymerase sigma factor n=2 Tax=Chloroflexi ... 298 3e-79 UniRef50_C1E4E8 Predicted protein n=2 Tax=Micromonas RepID=C1E4E... 298 6e-79 UniRef50_B8LLW6 Putative uncharacterized protein n=2 Tax=Picea s... 297 8e-79 UniRef50_Q6AK94 RNA polymerase sigma factor n=3 Tax=Deltaproteob... 297 9e-79 UniRef50_Q7NB90 RNA polymerase sigma factor n=2 Tax=Mycoplasma R... 296 2e-78 UniRef50_Q1Q6A4 RNA polymerase sigma factor n=1 Tax=Candidatus K... 295 3e-78 UniRef50_B9L1K5 RNA polymerase sigma factor n=1 Tax=Thermomicrob... 294 6e-78 UniRef50_B8G577 RNA polymerase sigma factor n=4 Tax=Chloroflexus... 293 1e-77 UniRef50_Q8S9C8 RNA polymerase sigma factor n=1 Tax=Cyanophora p... 291 5e-77 UniRef50_B5Y8E5 RNA polymerase sigma factor n=1 Tax=Coprothermob... 291 5e-77 UniRef50_Q56VT3 RNA polymerase sigma factor (Fragment) n=1 Tax=H... 291 7e-77 UniRef50_UPI0001C317B8 RNA polymerase, sigma 70 subunit, RpoD su... 290 1e-76 UniRef50_D1CF84 RNA polymerase sigma factor n=2 Tax=Bacteria Rep... 289 2e-76 UniRef50_Q39515 Chloroplast RNA polymerase sigma subunit n=1 Tax... 288 7e-76 UniRef50_D1J322 Whole genome shotgun sequence of line PN40024, s... 287 8e-76 UniRef50_B8HRG7 RNA polymerase sigma factor n=9 Tax=Cyanobacteri... 286 1e-75 UniRef50_B1AIY8 RNA polymerase sigma factor n=15 Tax=Ureaplasma ... 286 1e-75 UniRef50_Q03066 RNA polymerase sigma-C factor n=22 Tax=Cyanobact... 286 1e-75 UniRef50_C9XJA1 RNA polymerase sigma factor n=5 Tax=Clostridium ... 286 2e-75 UniRef50_B5YKU3 RNA polymerase sigma factor n=1 Tax=Thermodesulf... 286 2e-75 UniRef50_A0LLA1 RNA polymerase sigma factor n=1 Tax=Syntrophobac... 285 3e-75 UniRef50_Q7U3K5 RNA polymerase sigma factor n=21 Tax=Cyanobacter... 284 8e-75 UniRef50_B1VAH4 RNA polymerase sigma factor n=5 Tax=Acholeplasma... 283 1e-74 UniRef50_O22455 Sigma factor 2 n=8 Tax=core eudicotyledons RepID... 282 2e-74 UniRef50_C7M2H3 RNA polymerase sigma factor n=1 Tax=Acidimicrobi... 282 3e-74 UniRef50_B0M9H5 RNA polymerase sigma factor n=1 Tax=Anaerostipes... 282 3e-74 UniRef50_D1IHF7 Whole genome shotgun sequence of line PN40024, s... 282 3e-74 UniRef50_Q0SG50 RNA polymerase sigma factor n=1 Tax=Rhodococcus ... 281 4e-74 UniRef50_D1C9N7 RNA polymerase sigma factor n=1 Tax=Sphaerobacte... 281 5e-74 UniRef50_A5JEM2 Chloroplast RNA-polymerase sigma factor (Fragmen... 281 6e-74 UniRef50_Q2JRK5 RNA polymerase sigma factor n=3 Tax=Cyanobacteri... 280 1e-73 UniRef50_UPI00016C4C50 transcription initiation factor sigma 70 ... 279 2e-73 UniRef50_C6X620 RNA polymerase sigma factor RpoD n=68 Tax=Bacter... 279 2e-73 UniRef50_B3DXQ3 RNA polymerase sigma factor n=5 Tax=Chlamydiae/V... 279 3e-73 UniRef50_B7GEJ9 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 278 5e-73 UniRef50_Q116K5 RNA polymerase sigma factor n=1 Tax=Trichodesmiu... 277 7e-73 UniRef50_A9ESS1 RNA polymerase sigma factor n=1 Tax=Sorangium ce... 277 9e-73 UniRef50_A9BJC9 RNA polymerase sigma factor n=3 Tax=Thermotogace... 277 1e-72 UniRef50_B5JCN6 RNA polymerase sigma factor n=1 Tax=Verrucomicro... 276 1e-72 UniRef50_B0RI86 RNA polymerase sigma factor n=2 Tax=Clavibacter ... 276 2e-72 UniRef50_D1CD77 RNA polymerase sigma factor n=1 Tax=Thermobaculu... 275 3e-72 UniRef50_Q9LD95 Sigma factor-like protein n=3 Tax=Eukaryota RepI... 275 3e-72 UniRef50_Q601Y8 RNA polymerase sigma factor n=8 Tax=Bacteria Rep... 274 5e-72 UniRef50_B7K407 RNA polymerase sigma factor n=27 Tax=Cyanobacter... 274 5e-72 UniRef50_B9S0J0 RNA polymerase sigma factor rpoD, putative n=1 T... 274 7e-72 UniRef50_B1ZU80 RNA polymerase sigma factor n=6 Tax=Verrucomicro... 274 8e-72 UniRef50_Q9ZTL1 RNA polymerase sigma factor n=1 Tax=Cyanidium ca... 273 1e-71 UniRef50_B8HIZ1 RNA polymerase sigma factor n=1 Tax=Arthrobacter... 273 1e-71 UniRef50_C1SHQ6 RNA polymerase sigma factor n=1 Tax=Denitrovibri... 273 2e-71 UniRef50_Q31QR8 RNA polymerase sigma factor rpoD4 n=59 Tax=Cyano... 272 3e-71 UniRef50_Q9KHE4 RNA polymerase sigma factor n=14 Tax=Cyanobacter... 272 3e-71 UniRef50_B2IZW2 RNA polymerase sigma factor n=14 Tax=Cyanobacter... 272 3e-71 UniRef50_B2J5S6 RNA polymerase sigma factor n=13 Tax=Cyanobacter... 271 5e-71 UniRef50_B0N062 Putative uncharacterized protein n=1 Tax=Alistip... 271 6e-71 UniRef50_D1J802 RNA polymerase sigma factor n=1 Tax=Mycoplasma h... 271 6e-71 UniRef50_P18184 RNA polymerase principal sigma factor hrdC n=5 T... 271 8e-71 UniRef50_A8ZNW0 RNA polymerase sigma factor n=1 Tax=Acaryochlori... 271 8e-71 UniRef50_B9ZQZ1 RNA polymerase sigma factor n=1 Tax=Thioalkalivi... 270 9e-71 UniRef50_D1N7J7 RNA polymerase sigma factor n=1 Tax=Victivallis ... 270 1e-70 UniRef50_A6DK04 RNA polymerase sigma factor n=1 Tax=Lentisphaera... 269 2e-70 UniRef50_Q2SRY7 RNA polymerase sigma factor n=5 Tax=Mollicutes R... 269 3e-70 UniRef50_A3ZWN2 RNA polymerase sigma factor n=1 Tax=Blastopirell... 269 3e-70 UniRef50_Q03065 RNA polymerase sigma-B factor n=68 Tax=cellular ... 268 4e-70 UniRef50_D1CDN0 RNA polymerase sigma factor n=1 Tax=Thermobaculu... 268 5e-70 UniRef50_B3R1P5 RNA polymerase sigma factor n=78 Tax=Betaproteob... 268 5e-70 UniRef50_B8KI17 RNA polymerase sigma factor n=1 Tax=gamma proteo... 267 1e-69 UniRef50_Q39477 RNA polymerase sigma factor (Fragment) n=1 Tax=C... 267 1e-69 UniRef50_B9M4Z2 RNA polymerase sigma factor n=12 Tax=Desulfuromo... 266 2e-69 UniRef50_A8RNE4 RNA polymerase sigma factor n=1 Tax=Clostridium ... 266 3e-69 UniRef50_A6G031 RNA polymerase sigma factor n=1 Tax=Plesiocystis... 265 3e-69 UniRef50_A9G730 RNA polymerase sigma factor n=1 Tax=Sorangium ce... 265 3e-69 UniRef50_A5IY54 RNA polymerase sigma factor n=2 Tax=Mycoplasma R... 265 3e-69 UniRef50_Q1AV06 RNA polymerase sigma factor n=3 Tax=Rubrobacter ... 264 6e-69 UniRef50_D0L243 RNA polymerase sigma factor n=1 Tax=Halothiobaci... 264 6e-69 UniRef50_Q6A8Y3 RNA polymerase principal sigma factor HrdD n=2 T... 264 8e-69 UniRef50_Q2T2N0 RNA polymerase sigma factor n=32 Tax=pseudomalle... 263 2e-68 UniRef50_Q1ASS7 RNA polymerase sigma factor n=1 Tax=Rubrobacter ... 262 3e-68 UniRef50_A9B1P1 RNA polymerase sigma factor n=1 Tax=Herpetosipho... 262 3e-68 UniRef50_Q73P62 RNA polymerase sigma factor n=2 Tax=Treponema Re... 262 3e-68 UniRef50_Q0F2K4 RNA polymerase sigma factor n=1 Tax=Mariprofundu... 262 4e-68 UniRef50_B9L491 RNA polymerase sigma factor n=1 Tax=Thermomicrob... 261 4e-68 UniRef50_Q8S9C9 RNA polymerase sigma factor n=1 Tax=Cyanophora p... 261 5e-68 UniRef50_Q60012 RNA polymerase principal sigma factor hrdD n=27 ... 261 5e-68 UniRef50_P78022 RNA polymerase sigma factor rpoD n=2 Tax=Mycopla... 261 6e-68 UniRef50_A5UVI3 RNA polymerase sigma factor n=1 Tax=Roseiflexus ... 261 7e-68 UniRef50_B3PMH4 RNA polymerase sigma-70 factor n=1 Tax=Mycoplasm... 261 8e-68 UniRef50_Q9KI19 RNA polymerase sigma factor rpoS n=6 Tax=Coxiell... 260 1e-67 UniRef50_B3QZV6 RNA polymerase sigma factor n=1 Tax=Candidatus P... 260 1e-67 UniRef50_Q7XXT0 Plastid sigma factor 2A n=13 Tax=Poaceae RepID=Q... 259 2e-67 UniRef50_D0LRC2 RNA polymerase sigma factor n=1 Tax=Haliangium o... 259 2e-67 UniRef50_B1K0Z2 RNA polymerase sigma factor n=2 Tax=Burkholderia... 259 2e-67 UniRef50_Q6KI01 RNA polymerase sigma factor n=1 Tax=Mycoplasma m... 258 4e-67 UniRef50_A9ALE2 RNA polymerase sigma factor n=19 Tax=Burkholderi... 258 5e-67 UniRef50_Q8LK21 Chloroplast RNA polymerase sigma factor, c n=4 T... 258 6e-67 UniRef50_A6A8E7 RNA polymerase sigma factor RpoD (Fragment) n=25... 258 6e-67 UniRef50_C1SKA7 RNA polymerase sigma factor n=1 Tax=Denitrovibri... 258 6e-67 UniRef50_Q9ZSL6 Sigma-like factor n=2 Tax=Arabidopsis thaliana R... 257 9e-67 UniRef50_C1A692 RNA polymerase sigma factor n=1 Tax=Gemmatimonas... 257 1e-66 UniRef50_P35540 RNA polymerase sigma factor rpoS n=502 Tax=Prote... 256 1e-66 UniRef50_Q2S172 RNA polymerase sigma-70 factor n=91 Tax=Bacteroi... 256 2e-66 UniRef50_A4AF82 RNA polymerase sigma factor n=9 Tax=Bacteria Rep... 256 2e-66 UniRef50_B1WQH6 RNA polymerase sigma factor n=5 Tax=Chroococcale... 256 3e-66 UniRef50_D1A523 RNA polymerase sigma factor n=3 Tax=Actinomyceta... 255 4e-66 UniRef50_A6CZ07 RNA polymerase sigma factor n=1 Tax=Vibrio shilo... 254 9e-66 UniRef50_D1HUY6 Whole genome shotgun sequence of line PN40024, s... 253 2e-65 UniRef50_C1DV14 RNA polymerase sigma factor n=1 Tax=Sulfurihydro... 252 3e-65 UniRef50_B2VA41 RNA polymerase sigma factor n=2 Tax=Hydrogenothe... 252 3e-65 UniRef50_B4U904 RNA polymerase sigma factor n=5 Tax=Aquificales ... 252 3e-65 UniRef50_Q3JAH2 RNA polymerase sigma factor n=2 Tax=Nitrosococcu... 252 3e-65 UniRef50_D0Z2H8 RNA polymerase sigma factor n=1 Tax=Photobacteri... 252 4e-65 UniRef50_B7KCK0 RNA polymerase sigma factor n=2 Tax=Cyanothece R... 251 6e-65 UniRef50_A6FX97 RNA polymerase sigma factor n=2 Tax=Plesiocystis... 251 7e-65 UniRef50_Q84LK8 Os08g0242800 protein n=5 Tax=Poaceae RepID=Q84LK... 250 9e-65 UniRef50_A9GLY8 RNA polymerase sigma factor n=1 Tax=Sorangium ce... 250 1e-64 UniRef50_D0LPW6 RNA polymerase sigma factor n=1 Tax=Haliangium o... 250 1e-64 UniRef50_UPI00003842B2 COG0568: DNA-directed RNA polymerase, sig... 249 2e-64 UniRef50_Q21TX3 RNA polymerase sigma factor n=1 Tax=Rhodoferax f... 249 2e-64 UniRef50_D2R4L7 RNA polymerase, sigma 70 subunit, RpoD subfamily... 249 3e-64 UniRef50_Q2JMC5 RNA polymerase sigma factor n=2 Tax=Synechococcu... 248 5e-64 UniRef50_Q3LW61 Sigma 2 transcription factor n=1 Tax=Bigelowiell... 247 9e-64 UniRef50_Q1Z2N9 RNA polymerase sigma factor n=9 Tax=Photobacteri... 247 1e-63 UniRef50_Q4A5V6 RNA polymerase sigma factor n=3 Tax=Mycoplasma R... 247 1e-63 UniRef50_B1ZRN1 RNA polymerase sigma factor n=1 Tax=Opitutus ter... 247 1e-63 UniRef50_C7LZN3 RNA polymerase sigma factor n=1 Tax=Acidimicrobi... 246 3e-63 UniRef50_O24621 Sigma factor 3 n=3 Tax=Brassicaceae RepID=O24621... 245 5e-63 UniRef50_C5RI15 RNA polymerase sigma factor n=1 Tax=Clostridium ... 244 9e-63 UniRef50_A8Z659 RNA polymerase sigma factor rpoD n=5 Tax=Flavoba... 243 1e-62 UniRef50_C0QYD2 RNA polymerase sigma factor n=2 Tax=Brachyspira ... 243 1e-62 UniRef50_B6J9R7 RNA polymerase sigma factor RpoD n=1 Tax=Oligotr... 243 1e-62 UniRef50_C4V1Y7 RNA polymerase sigma factor n=1 Tax=Selenomonas ... 243 1e-62 UniRef50_A2PYK3 RNA polymerase sigma-subunit (Fragment) n=11 Tax... 242 3e-62 UniRef50_B7KLN9 RNA polymerase sigma factor n=1 Tax=Cyanothece s... 242 3e-62 UniRef50_C6JJT6 RNA polymerase sigma factor n=5 Tax=Fusobacteriu... 242 4e-62 UniRef50_A1TWY8 RNA polymerase, sigma 32 subunit, RpoH n=2 Tax=M... 241 5e-62 UniRef50_A7MZX8 RNA polymerase sigma factor n=1 Tax=Vibrio harve... 241 7e-62 UniRef50_A8ZPW9 RNA polymerase sigma-70 factor, putative n=10 Ta... 241 7e-62 UniRef50_B7FPT1 Predicted protein n=2 Tax=Bacillariophyta RepID=... 240 1e-61 UniRef50_A6GB19 RNA polymerase sigma factor n=1 Tax=Plesiocystis... 239 2e-61 UniRef50_B8C8Z6 Predicted protein (Fragment) n=1 Tax=Thalassiosi... 239 2e-61 UniRef50_B5ES65 RNA polymerase sigma factor n=2 Tax=Acidithiobac... 239 2e-61 UniRef50_Q47D27 RNA polymerase sigma factor n=1 Tax=Dechloromona... 239 2e-61 UniRef50_Q9KJT7 RNA polymerase sigma factor n=1 Tax=Peanut witch... 239 3e-61 UniRef50_B5YES0 RNA polymerase sigma factor n=2 Tax=Dictyoglomus... 237 9e-61 UniRef50_C1DVG2 RNA polymerase sigma factor n=4 Tax=Hydrogenothe... 237 9e-61 UniRef50_Q4BV73 RNA polymerase sigma factor n=1 Tax=Crocosphaera... 237 1e-60 UniRef50_C6Y0F4 RNA polymerase sigma factor, sigma-70 family n=1... 237 1e-60 UniRef50_Q21UR2 RNA polymerase sigma factor n=5 Tax=Burkholderia... 236 2e-60 UniRef50_Q8L7P7 Sigma factor SigC n=5 Tax=rosids RepID=Q8L7P7_ARATH 236 2e-60 UniRef50_B8BRS7 Plastid RNA polymerase sigma factor (Fragment) n... 236 3e-60 UniRef50_Q1PZV7 RNA polymerase sigma factor n=1 Tax=Candidatus K... 235 3e-60 Sequences not found previously or not previously below threshold: >UniRef50_Q87DT7 RNA polymerase sigma factor rpoD n=599 Tax=cellular organisms RepID=RPOD_XYLFT Length = 618 Score = 636 bits (1641), Expect = 0.0, Method: Composition-based stats. Identities = 362/612 (59%), Positives = 440/612 (71%), Gaps = 9/612 (1%) Query: 6 QSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDL 65 QS +K L+++G EQGYLTYAEVNDHLPED+VD DQIEDII MIN MGI+V E APDA+ L Sbjct: 9 QSDIKQLISKGLEQGYLTYAEVNDHLPEDLVDPDQIEDIIGMINGMGIEVHEVAPDAETL 68 Query: 66 MLAE-----NTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA 120 +L E D+ AAE AA LS++++E GRTTDPVRMYMREMGTVELLTREGEI IA Sbjct: 69 LLNEGNTGNREVDDTAAEEAAAALSALDTEAGRTTDPVRMYMREMGTVELLTREGEIAIA 128 Query: 121 KRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATH 180 KRIE+G+++VQ ++ +P + LL +Y+ + + RL++++ GF D E++ ++ Sbjct: 129 KRIEEGLSEVQAALGAFPLSTELLLSEYELHKEGKRRLTEVVVGFNDLIEEDNSVTSSVD 188 Query: 181 VGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGR 240 V E E ++D+D D D DP + L +Y + G Sbjct: 189 VTDESIVEVDEEDDDSVGNDEDAP----MIGPDPAEVASRIESLSTEYAKFKKLYAKHGP 244 Query: 241 SHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKK 300 H + ++ +F F+L D LV ++ M++ V+ ER ++ L KMP+K Sbjct: 245 EHKAVIKVREDVAAIFVTFKLSLPLTDLLVQQLQNMVNSVKDHERKVLHLATNVAKMPRK 304 Query: 301 NFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKD 360 +FI + N+T+ W AI + WS L D+ +++ Q +E+ LT+ +K+ Sbjct: 305 DFIRSWENNQTNLEWVEDAIKRKQKWSSALRDIKDQITAEQQASIDLEKVNSLTLADIKE 364 Query: 361 INRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE 420 INR M GEAKA +AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV KFE Sbjct: 365 INRMMVYGEAKASKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVCKFE 424 Query: 421 YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTP 480 +RRG+KFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQ+ GRE TP Sbjct: 425 HRRGFKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQQFGREATP 484 Query: 481 EELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESL 540 EELA+ M MPEDKIRKV+KIAKEPISMETPIGDDEDSHLGDFIED +E P+D+ T +L Sbjct: 485 EELAKEMDMPEDKIRKVMKIAKEPISMETPIGDDEDSHLGDFIEDPNVESPVDTTTNVNL 544 Query: 541 RAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 600 +VLAGLT REAKVLRMRFGIDMNTD+TLEEVGKQFDVTRERIRQIEAKALRKLRH Sbjct: 545 SETVREVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH 604 Query: 601 PSRSEVLRSFLD 612 PSRSE LRSFLD Sbjct: 605 PSRSEQLRSFLD 616 >UniRef50_Q1QBP8 RNA polymerase sigma factor n=8 Tax=Gammaproteobacteria RepID=Q1QBP8_PSYCK Length = 648 Score = 611 bits (1575), Expect = e-173, Method: Composition-based stats. Identities = 366/628 (58%), Positives = 458/628 (72%), Gaps = 21/628 (3%) Query: 7 SQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLM 66 SQL L+ GKEQGYLTYAEVND LP+ I +SDQIEDI+QM+ D+GI++ E APDADD++ Sbjct: 20 SQLATLIQMGKEQGYLTYAEVNDQLPDSITESDQIEDIVQMLTDVGIKIFESAPDADDIL 79 Query: 67 LAENTADEDAAEAAAQVLS-SVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIED 125 + ++++D+D A A + SVE+E GRTTDPVRMYMREMGTV+LLTREGEI IAKRIE+ Sbjct: 80 MNDDSSDDDMAADEAAAVLASVETEPGRTTDPVRMYMREMGTVDLLTREGEIAIAKRIEE 139 Query: 126 GINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEED------------ 173 GI VQ +++ +P + ++L++Y +V+ E +LSD+ITGF+DP EED Sbjct: 140 GIRDVQHAMSYWPGTVQFVLDEYQKVQDGEKKLSDVITGFLDPETEEDKIAAQEAKEAAK 199 Query: 174 --------LAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELR 225 + + + DD++ED+E+ ++D+ ++ + IDPE R + E+ Sbjct: 200 EERERIKEEKENPPIIKEKAKVKSGLDDDEEDDEEVEEDAEEETSGIDPEEVRLRLEEIE 259 Query: 226 AQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQER 285 ++ + + GR A A E +L+ F +L + D ++ M + D VR ER Sbjct: 260 HLFIKAKQALLDYGRGSAQANEAYEQLASRFMMLKLNNRLSDQVMAIMHDVYDDVRKHER 319 Query: 286 LIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQ 345 IM+L + + +MP++ F F NET+ W I ++ L V+++V + ++ Sbjct: 320 QIMRLVIRRGRMPREEFRKTFPSNETNVDWLIERIKGKPAFAATLEKVADDVILLQRAIR 379 Query: 346 QIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLI 405 E + + I +KD+ RRM+IGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLI Sbjct: 380 DYEHKLEMEIHDMKDVARRMAIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLI 439 Query: 406 QEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNR 465 QEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK+NR Sbjct: 440 QEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKINR 499 Query: 466 ISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIED 525 +SRQ+LQEMGREPTPEEL ER+ M E K+RKVLKIAKEPISMETPIGDDEDSHLGDFIED Sbjct: 500 VSRQLLQEMGREPTPEELGERLEMDEAKVRKVLKIAKEPISMETPIGDDEDSHLGDFIED 559 Query: 526 TTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRE 585 T+ P+D AT LR AT DVL LT REA+VL+MRFGIDM TD+TLEEVGKQFDVTRE Sbjct: 560 GTISSPVDDATAAGLREATRDVLGNLTEREARVLKMRFGIDMPTDHTLEEVGKQFDVTRE 619 Query: 586 RIRQIEAKALRKLRHPSRSEVLRSFLDD 613 RIRQIEAKALRKLRHPSRSE LRSFL++ Sbjct: 620 RIRQIEAKALRKLRHPSRSEHLRSFLEN 647 >UniRef50_Q83BB6 RNA polymerase sigma factor rpoD n=106 Tax=Proteobacteria RepID=RPOD_COXBU Length = 698 Score = 610 bits (1572), Expect = e-173, Method: Composition-based stats. Identities = 352/602 (58%), Positives = 439/602 (72%), Gaps = 8/602 (1%) Query: 11 LLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLAEN 70 L+ K +GYL + ++ + LP D D Q+E II + +MGI+V E PDAD L+L E+ Sbjct: 102 ALLEEAKNKGYLVHEDLINLLPNDYADPSQMEGIIGRLTEMGIKVFEIPPDADSLLLEED 161 Query: 71 TADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQV 130 T +D + + ++ V + RTTDPVRMYMREMG+VELLTREGEI IAKRIE+GI QV Sbjct: 162 TQSDD--DEINEDVAEVLATETRTTDPVRMYMREMGSVELLTREGEIVIAKRIEEGIRQV 219 Query: 131 QCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDL 190 +V +YPE I +++YD + A E RLSDL+ GF D + TA+ V E ++ Sbjct: 220 MGAVVQYPELIEKFIKEYDTIVATEGRLSDLLIGFFD-----EEESTASPVAPEARDKEA 274 Query: 191 DDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEIL 250 + +++D +G D ++ DP + ++ EL+ Y ++ IK G+ + Sbjct: 275 ETSDEDDGGEGGSDEF-GESGPDPLITQQHMEELKKLYGRYQNAIKRYGKKAPATLKHQK 333 Query: 251 KLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNE 310 L+E+F F+L KQF+ L +R M+ R QERLIM CV + K P+K FI F NE Sbjct: 334 ALAELFSTFKLSIKQFNRLTGQLRRMLRAARAQERLIMSYCVVKAKTPRKKFIASFPHNE 393 Query: 311 TSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEA 370 T+ W NK +++L S+E++RA + L Q+EE+ L I+++K+INRR++IGEA Sbjct: 394 TNMKWLEQYKNENKEQAKRLEKYSKEIYRAQRNLAQLEEQNNLNIQEIKEINRRVAIGEA 453 Query: 371 KARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY 430 K+RRAKKEM+EANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY Sbjct: 454 KSRRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY 513 Query: 431 ATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMP 490 ATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQ+LQE G E TPEEL RM MP Sbjct: 514 ATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQILQETGIEATPEELGRRMDMP 573 Query: 491 EDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAG 550 E+K+RKVLKIAKEPISMETPIG+DEDS+LGDFIED +E P+D AT+ L AT ++L+ Sbjct: 574 EEKVRKVLKIAKEPISMETPIGEDEDSNLGDFIEDINMESPVDFATSAGLMEATREILST 633 Query: 551 LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSF 610 LT REAKVLRMRFGIDMNTD+TLEEVGKQFDVTRERIRQIEAKALRKLRHPSR+E L SF Sbjct: 634 LTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRAEKLHSF 693 Query: 611 LD 612 ++ Sbjct: 694 IE 695 >UniRef50_D1TN62 RNA polymerase sigma factor n=2 Tax=Burkholderia sp. CCGE1002 RepID=D1TN62_9BURK Length = 663 Score = 580 bits (1496), Expect = e-164, Method: Composition-based stats. Identities = 291/620 (46%), Positives = 402/620 (64%), Gaps = 9/620 (1%) Query: 2 EQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPD 61 ++ Q Q++ L+ GKE+GYLT+AE+NDHLP++ + IE I+ NDMG+ V E+AP Sbjct: 43 DEEQQRQMRALIQLGKERGYLTHAEINDHLPDNFAQTAAIETIVSTFNDMGVAVYEQAPS 102 Query: 62 ADDLMLAENTA----DEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEI 117 A+ L++ + T D+ A E A LSSV+SE GRTTDP RMYMREMG LLTR GEI Sbjct: 103 AEVLLMNDATPATMLDDQADEEAEVALSSVDSEFGRTTDPFRMYMREMGATGLLTRAGEI 162 Query: 118 DIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPN-----AEE 172 +IAKRIE G++++ ++A P ++ +L ++EA E R+ +L+ G + Sbjct: 163 EIAKRIEGGLHEMVQAIAVSPATVSAILLSAKQIEAGELRIDELVDGINAETESVEQSST 222 Query: 173 DLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTR 232 D A + + D+ E E+ S + + FA +R + Sbjct: 223 DFAEEPDTEQATADDDGGGDEHSEIEDRDTARSNEARLKQLTSDSLVIFARVRELFEQIS 282 Query: 233 DTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCV 292 + A+G+ + + R + D L N+++ + +VR ER I+++ V Sbjct: 283 GSQAAQGKGRVARADLREAIQRELAPIRFTARTIDRLCNAVQQQVAQVRAVERHILQIAV 342 Query: 293 EQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETG 352 ++C MP++ F+ F G ET W + A ++ + L + +KL IE + G Sbjct: 343 DRCGMPREKFVESFQGRETDLAWSESTAAASREYGAALERSLPAIQAEQRKLLDIETKVG 402 Query: 353 LTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL 412 L ++Q+K INR+M E+K +AK+EM+EANLRLVISIAKKY NRG+ FLDLIQEGNIGL Sbjct: 403 LPLQQLKKINRQMMAAESKMLQAKREMIEANLRLVISIAKKYVNRGMHFLDLIQEGNIGL 462 Query: 413 MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQ 472 MKAVDKFEYRRG+KFSTYATWW+RQA+TRS+ADQARTIRIPVHM+E+INKLNRISR++LQ Sbjct: 463 MKAVDKFEYRRGWKFSTYATWWVRQAVTRSLADQARTIRIPVHMMESINKLNRISREILQ 522 Query: 473 EMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPL 532 + GRE P LA+RM +PE+K+R +LKI ++P+S+ETP+GD+ D+ L D IED P Sbjct: 523 QTGREAHPAVLAQRMEVPEEKVRAMLKIGRQPLSLETPVGDEADTTLSDVIEDPMATSPA 582 Query: 533 DSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEA 592 D+A +LRAA + L L+ REAKVLRMRFGID +D TLEE+GKQFD+TRERIRQIE+ Sbjct: 583 DAAVQANLRAAINTALDALSPREAKVLRMRFGIDTASDCTLEELGKQFDLTRERIRQIES 642 Query: 593 KALRKLRHPSRSEVLRSFLD 612 KA+RKL HP+R+ LR FLD Sbjct: 643 KAMRKLMHPNRTAKLRPFLD 662 >UniRef50_P52324 RNA polymerase sigma factor rpoD n=83 Tax=Bacteria RepID=RPOD_CAUCR Length = 652 Score = 558 bits (1438), Expect = e-157, Method: Composition-based stats. Identities = 296/629 (47%), Positives = 391/629 (62%), Gaps = 27/629 (4%) Query: 7 SQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLM 66 + +K + + K +GY+T E+N LP + V D IED + M+++MG+ V+E DA++ Sbjct: 27 AGVKKFIKQAKARGYVTMDELNKVLPSEEVSPDAIEDTLAMLSEMGVNVVEAEEDAENAE 86 Query: 67 LAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDG 126 E ++ + S + RT DPVRMY+REMG+VELL+REGEI IAKRIE G Sbjct: 87 GGEVATRDEN---TTVIASDKPAAYDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAG 143 Query: 127 INQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELS 186 + + + E ++ + + L ++I A +A E Sbjct: 144 RDTMIRGLCESALTFEAIMVWREELGTGRILLREVIDLEGTYAAINGVAAQPAAEDDEGP 203 Query: 187 QEDLDDDEDEDEEDGDDDSADDDNSIDPE-LAREKFAELRAQYVVTRDTIKAKGRSHATA 245 E +DD+ E + +G + +DD ELR + D I ++ + Sbjct: 204 AEPVDDEAGEAKAEGAEGEDEDDFDDGAGPTVSAMEGELREGVMAILDAIASEFEAFRKL 263 Query: 246 QEEIL----------------------KLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQ 283 Q++++ + + K +L + + LV + + R+ Sbjct: 264 QDKLVGSRLKGEDLSDADRKAYEGLSATIIQHLKTLKLNNNRIEALVEQLYAINKRLIGL 323 Query: 284 ERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQK 343 E +++L + + + F+ + G+E + TW AM W++ + + S+ V + Sbjct: 324 EGRLLRLA-DSYGISRGEFLKAYFGSELNPTWSEQVKAMGVRWTKFVENDSQSVTDIRSE 382 Query: 344 LQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLD 403 + + ETG+ I+ + I + + GE +AR+AKKEMVEANLRLVISIAKKYTNRGLQFLD Sbjct: 383 IAALATETGVPIDDYRRIVQTVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQFLD 442 Query: 404 LIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKL 463 LIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK+ Sbjct: 443 LIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKI 502 Query: 464 NRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFI 523 R SRQML E+GREPTPEELAE++ MP +K+RKVLKIAKEPIS+ETPIGD+EDSHLGDFI Sbjct: 503 VRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFI 562 Query: 524 EDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVT 583 ED LP+D+A +LR T VLA LT RE +VLRMRFGI MNTD+TLEEVG+QF VT Sbjct: 563 EDKNAILPIDAAIQSNLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVT 622 Query: 584 RERIRQIEAKALRKLRHPSRSEVLRSFLD 612 RERIRQIEAKALRKL+HPSRS LRSFLD Sbjct: 623 RERIRQIEAKALRKLKHPSRSRKLRSFLD 651 >UniRef50_A9W0B8 RNA polymerase sigma factor n=15 Tax=Alphaproteobacteria RepID=A9W0B8_METEP Length = 718 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 303/640 (47%), Positives = 391/640 (61%), Gaps = 35/640 (5%) Query: 7 SQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLM 66 + +K +V K++GY+TY E+N+ LP+ VD DQIED++ ++DMGI+V+E + Sbjct: 81 AAVKRMVKLAKKRGYVTYEEINEVLPDGQVDGDQIEDVLAQLDDMGIRVVEAEESEEAAP 140 Query: 67 LAEN---------------TADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELL 111 A+ A+ A A + RT DPVRMY+REMG+VELL Sbjct: 141 EAKANGEASEEEESTEGGEVAETSGTRAVAVATPTTREPTDRTDDPVRMYLREMGSVELL 200 Query: 112 TREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLIT---GFVDP 168 +REGEI IAKRIE G + + E P ++ D + + L D+I + P Sbjct: 201 SREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELVDGKVLLRDIIDLEATYAGP 260 Query: 169 NAEEDLAPTATHVGSELSQEDL---DDDEDEDEEDGDDDSADDDNSIDPELAREKFAELR 225 +A E + +DED+ + + A + I P + E F + Sbjct: 261 DARGAPQEAEAEGEESEEAEGAVPPEGGDDEDDMENNVSLAAMEAEIKPRVL-ETFDNIA 319 Query: 226 AQYVVTRDT------IKAKGRSHATAQEEILK-----LSEVFKQFRLVPKQFDYLVNSMR 274 + Y R +K G + +AQ + + K L + + LV + Sbjct: 320 SNYRKLRKLQNEETELKTGGGTVTSAQTKKQAELKDIVVTDVKSLSLNANRIEALVEQLY 379 Query: 275 VMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMN-KPWSEKLHDV 333 + R+ + E +M+ E + + F+ + G E W + + K W + Sbjct: 380 DINKRLISHEGRLMR-AAEHHGVARDEFLRHYQGYELDPNWMDRVATLGGKGWKNFVERG 438 Query: 334 SEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKK 393 +V +++ + ETGL I + + I + GE +AR+AKKEM+EANLRLVISIAKK Sbjct: 439 GRQVADLREQILTLASETGLQIGEYRKIVAMVQKGEREARQAKKEMIEANLRLVISIAKK 498 Query: 394 YTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIP 453 YTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIP Sbjct: 499 YTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIP 558 Query: 454 VHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGD 513 VHMIETINK+ R SRQML E+GREPTPEELAE++ MP +K+RKVLKIAKEPIS+ETPIGD Sbjct: 559 VHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPIGD 618 Query: 514 DEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTL 573 +EDSHLGDFIED + LP+D+A +LR T VLA LT RE +VLRMRFGI MNTD+TL Sbjct: 619 EEDSHLGDFIEDKNVVLPIDAAIQSNLRETTTRVLASLTPREERVLRMRFGIGMNTDHTL 678 Query: 574 EEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 EEVG+QF VTRERIRQIEAKALRKL+HPSRS LRSFLD+ Sbjct: 679 EEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDN 718 >UniRef50_Q13K37 RNA polymerase sigma factor n=1 Tax=Burkholderia xenovorans LB400 RepID=Q13K37_BURXL Length = 628 Score = 554 bits (1428), Expect = e-156, Method: Composition-based stats. Identities = 247/619 (39%), Positives = 378/619 (61%), Gaps = 7/619 (1%) Query: 1 MEQNPQS-QLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEA 59 MEQ+ + QL+ L+ GKE+G+LT+ E+ DHLP+ + +D IE I++ ND+GI V + A Sbjct: 9 MEQDSREMQLRALMKLGKERGFLTHTEIVDHLPDCVAQADAIEGIVKAFNDVGIAVRDFA 68 Query: 60 PDADDLMLAENT----ADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREG 115 P D L+L + D+ A + A L+ SE G DP+R Y+REMG LLTREG Sbjct: 69 PTGDALLLGDAAQQSAPDDVAEDETATALTIAISEPGPAADPMRAYLREMGATPLLTREG 128 Query: 116 EIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLA 175 EI +A+RIE + ++ +A P + +L + DRV A E + DL+ GF++ +E L Sbjct: 129 EIAVARRIEACLREMLEVIALRPATVDAILSRADRVAAGELDIDDLVDGFLEQQPDEMLP 188 Query: 176 P--TATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRD 233 AT G+ S+ D E G ++ + + F+++R Q R Sbjct: 189 AMQGATAEGAAGSKADSGVPTSASESAGAIEADEARIARLTAGCNAIFSQVREQLASWRA 248 Query: 234 TIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVE 293 + + AQ ++ ++ Q R + L +R ++ +R ER +++L V Sbjct: 249 AVAGRTGQREEAQSTLVLIASTLGQIRFSARTIGELSADVRRAVEEIRGIERNVLRLAVN 308 Query: 294 QCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGL 353 Q M + F+ F G+ET W A A S L + +H +KL QIE GL Sbjct: 309 QGGMARDMFVETFVGSETDPEWLARAAAAAPACSAALMRCAPSIHSQQEKLAQIEAREGL 368 Query: 354 TIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLM 413 +++++K I+R+M++ + + + A++ M+EANLRLV+S+AKKY G+ LDL+QEGNIGLM Sbjct: 369 SLQELKWISRKMNVADRELQDARRAMIEANLRLVVSVAKKYVQSGMPLLDLVQEGNIGLM 428 Query: 414 KAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQE 473 KAVD+FEYRRG+KFSTYATWWIRQ+++R+IAD RTIR+PVHM + ++++ R++ +M QE Sbjct: 429 KAVDRFEYRRGFKFSTYATWWIRQSVSRAIADYGRTIRVPVHMADAMHRVKRVAGEMRQE 488 Query: 474 MGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLD 533 GR ELA R+ M E+K+R V ++ ++P+S++ PIG++ D+ LG+ +ED++ PLD Sbjct: 489 TGRPARSSELAARLGMSEEKVRSVQRVTRQPVSLDVPIGEEADTTLGEMVEDSSTLAPLD 548 Query: 534 SATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAK 593 + LR A L LT REAKV+++RFG+D +++TLEE+G QFDVTRER+RQI+ K Sbjct: 549 ALLQADLRVAIDAALGVLTPREAKVIKLRFGVDAVSEHTLEELGDQFDVTRERVRQIQNK 608 Query: 594 ALRKLRHPSRSEVLRSFLD 612 AL+KLRH L+++LD Sbjct: 609 ALQKLRHSDGISTLKNYLD 627 >UniRef50_C6XRI0 RNA polymerase sigma factor n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XRI0_HIRBI Length = 683 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 299/661 (45%), Positives = 395/661 (59%), Gaps = 54/661 (8%) Query: 5 PQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADD 64 + +K + GK +G++T+ E+N LP D V+ DQIED++ +++MGI V++ + + Sbjct: 23 SNASVKKFIAAGKARGFITHDELNKVLPSDEVNPDQIEDVMSALSEMGINVVDSDEEGEG 82 Query: 65 LMLAENTADEDAAEAAAQVLSSVESEIGR------TTDPVRMYMREMGTVELLTREGEID 118 ++ E+A+ A + S+ + GR T DPVRMY+REMGTVELL+REGEI Sbjct: 83 DGDEASSDGENASGAVTKAKSTAAATGGRSDRYDRTDDPVRMYLREMGTVELLSREGEIA 142 Query: 119 IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNA-----EED 173 IAKRIE G + + + E P ++ +E E L D+I A ++ Sbjct: 143 IAKRIEAGRDAMIRGLCESPLTFEAIMVWRQELEDERVLLRDIIDLEATYAAANGGVPDN 202 Query: 174 LAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELA---------------- 217 A E ++ + E E++ D+ + Sbjct: 203 SAAAVALEKGEPLEKTPEQLEAEEKAKQDEIAKKKRIEEGLPPEEEGKEDDDDDDFDDGG 262 Query: 218 ----REKFAELRAQYVVTRDTIKAKGRSHATAQEEIL----------------------K 251 AELR D + ++ +++ QE+++ Sbjct: 263 AMSMSAMEAELREGVTDILDNVASEFQAYRRLQEKLVNRHMEGKELSPKDSEEYVKLQDD 322 Query: 252 LSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNET 311 + E K+ L + + LV + + R+ E +M+L + +P+K+F+ + G E Sbjct: 323 IIENLKKLHLNNARIETLVEQLYAINKRLMGLEGGLMRLA-DAHGVPRKSFLDNYFGTEL 381 Query: 312 SDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAK 371 W ++ W + + + +V ++ + +E G+ IE + I + GE + Sbjct: 382 EPDWGTRVSLISAKWKKFIAAETNKVEEMRSEISSLAQEMGVPIEDFRRIVATVQKGERE 441 Query: 372 ARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYA 431 AR AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYA Sbjct: 442 ARVAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYA 501 Query: 432 TWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPE 491 TWWIRQAITRSIADQARTIRIPVHMIETINK+ R RQML E+GREPTPEELAE++ +P Sbjct: 502 TWWIRQAITRSIADQARTIRIPVHMIETINKIVRTQRQMLHEIGREPTPEELAEKLGLPL 561 Query: 492 DKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGL 551 +KIRKVLKIAKEPIS+ETPIGDDEDS+LGDFIED LP+D+A +LR T VLA L Sbjct: 562 EKIRKVLKIAKEPISLETPIGDDEDSNLGDFIEDKMALLPVDAAIQSNLRETTTRVLASL 621 Query: 552 TAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 T RE +VLRMRFGI MNTD+TLEEVG+QF VTRERIRQIEAKALRKL+HPSRS LRSFL Sbjct: 622 TPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFL 681 Query: 612 D 612 D Sbjct: 682 D 682 >UniRef50_A0L5T1 RNA polymerase sigma factor n=3 Tax=Bacteria RepID=A0L5T1_MAGSM Length = 683 Score = 537 bits (1384), Expect = e-151, Method: Composition-based stats. Identities = 313/675 (46%), Positives = 412/675 (61%), Gaps = 65/675 (9%) Query: 2 EQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPD 61 E + +K L+ RGKE+G+LTY EVND LP D+ ++ +ED++ ++++MGI ++++ + Sbjct: 9 EDTKREDMKKLIARGKERGFLTYDEVNDVLPNDMTSAEDMEDVVGLLDNMGIDLIDDERE 68 Query: 62 AD------------DLMLAENTADEDAA---------------EAAAQVLSSVESEIGRT 94 +L ++ DE+ + + + ++G+T Sbjct: 69 EGARPKSRPAAGIGNLDSLDDDVDEEILGISDFDSEDDESDDEDGLRSDGAIEDIDLGKT 128 Query: 95 TDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAE 154 DPVRMY+REMG+VELLTREGEI IAKRIE+G N+V ++ + P ++ +R+ A Sbjct: 129 DDPVRMYLREMGSVELLTREGEIAIAKRIEEGCNEVIATICDAPSTFNEVMMLAERLRAG 188 Query: 155 EARLSDLIT-------GFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSAD 207 E L +++ G D + D S+ D DD + + + Sbjct: 189 EISLREVLDISTPQDEGSEDEDLNNDDDEVEASTESDDEDVDEDDIVNGPVKVRNPVPEP 248 Query: 208 DDNSIDPELAREKFAE---LRAQYVVTRDTIKAKGRSH---------------------- 242 + E+A ++ A+ R Y T R + Sbjct: 249 PPVKTEEEIAAQREADNEQFRELYEATLAIFDEITRENEVLVELRDPLNDALQNDPEGET 308 Query: 243 -----ATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKM 297 A Q ++ E+ + PKQ D LV ++ + VR QE+ I+ + V QC + Sbjct: 309 CKRLLAEYQAHKARIVEIVAGIKFSPKQRDRLVERIKSYVAAVRAQEQKIITI-VTQCNV 367 Query: 298 PKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQ 357 K FI FTGNE+ TW ++L++ SE + A ++ IEEE G T+ Sbjct: 368 KKPEFIEQFTGNESDTTWIQNFAKTRSAPWKRLYEQSELICEAQLVIRSIEEEAGQTVAD 427 Query: 358 VKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD 417 +K N+++ GE +A +AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD Sbjct: 428 LKKCNKKLMDGERRANQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD 487 Query: 418 KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE 477 KFE+RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKL R SRQM+QEMGRE Sbjct: 488 KFEWRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQMVQEMGRE 547 Query: 478 PTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATT 537 PTPEE+AERM M +K+RKVLKIAKEPIS+ETP+GD+EDSHLGDFIED ++ P + A Sbjct: 548 PTPEEIAERMSMSLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKSMLSPSEHAIM 607 Query: 538 ESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRK 597 +LR T VL LT+RE VLRMRFGI + TD+TLEEVGKQF+VTRERIRQIEAKALRK Sbjct: 608 SNLRDTTGRVLQTLTSREEHVLRMRFGIGLPTDHTLEEVGKQFNVTRERIRQIEAKALRK 667 Query: 598 LRHPSRSEVLRSFLD 612 LRHP+RS LRSFL+ Sbjct: 668 LRHPTRSRKLRSFLE 682 >UniRef50_P33452 RNA polymerase sigma factor rpoD n=130 Tax=Proteobacteria RepID=RPOD_AGRT5 Length = 684 Score = 534 bits (1376), Expect = e-150, Method: Composition-based stats. Identities = 301/658 (45%), Positives = 389/658 (59%), Gaps = 51/658 (7%) Query: 5 PQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADD 64 +K ++ K++GY+T E+N LP + V S+QIED + M++DMGI V+E+ + Sbjct: 27 SDDAVKKMIKAAKKRGYVTMDELNSVLPSEEVTSEQIEDTMAMLSDMGINVIEDEDAEEA 86 Query: 65 LMLAENTADEDAAEAAAQVLSS---------VESEIGRTTDPVRMYMREMGTVELLTREG 115 ++ ++ ++ S + RT DPVRMY+REMG+VELL+REG Sbjct: 87 APAEDDGDSDNEESEGGELAPSGGTALATAKKKEPTDRTDDPVRMYLREMGSVELLSREG 146 Query: 116 EIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLA 175 EI IAKRIE G + + E P L+ D + L ++I + E A Sbjct: 147 EIAIAKRIEAGRETMISGLCESPLTFQALIIWRDELNEGTTLLREIIDLETTYSGPEAKA 206 Query: 176 PTATHVGSELSQEDLDDDEDEDEED------GDDDSADDDNSIDPEL-----------AR 218 ++ + +E E +D + + + PE Sbjct: 207 APQFQSPEKIEADRKAAEEKEKTRRLRAPTGDEDVTDVGGDGLPPEEEEEDDDESNLSLA 266 Query: 219 EKFAELRAQYVVTRDTIKAKGRSHATAQEEIL-----------------------KLSEV 255 AELR Q + T DTI + Q++ + +L Sbjct: 267 AMEAELRPQVMETLDTIADTYKKLRKLQDQQVEARLACTGTLSSGQERRYKELKDQLITA 326 Query: 256 FKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTW 315 K L + D LV + + R+ E +++L E + + +F+ + G E W Sbjct: 327 VKSLSLNQNRIDSLVEQLYDISKRLMQNEGRLLRLA-ESYGVKRDSFLEQYHGAELDPNW 385 Query: 316 FNAAIAMN-KPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARR 374 + + + W E + S + Q++Q + ETG++I + + I + GE +AR Sbjct: 386 MKSITNLAARGWKEFAREESNTIREIRQEIQNLSTETGISIAEFRRIVSMVQKGEREARI 445 Query: 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 434 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW Sbjct: 446 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 505 Query: 435 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKI 494 IRQAITRSIADQARTIRIPVHMIETINK+ R SRQML E+GREPTPEELAE++ MP +K+ Sbjct: 506 IRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKV 565 Query: 495 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAR 554 RKVLKIAKEPIS+ETP+GD+EDSHLGDFIED LP+D+A +LR T VLA LT R Sbjct: 566 RKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLTPR 625 Query: 555 EAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 E +VLRMRFGI MNTD+TLEEVG+QF VTRERIRQIEAKALRKL+HPSRS LRSFLD Sbjct: 626 EERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD 683 >UniRef50_Q0EWY1 RNA polymerase sigma factor n=2 Tax=Bacteria RepID=Q0EWY1_9PROT Length = 660 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 298/652 (45%), Positives = 407/652 (62%), Gaps = 44/652 (6%) Query: 1 MEQNPQSQLK-----LLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQV 55 M +N Q Q+ L+ +GK+ G++TY ++N HLP +V +D++E +I + +MG++V Sbjct: 1 MSKNSQEQVTIRELGSLMAKGKQAGFITYDDLNKHLPGGLVSADRVEQLINVFTEMGVEV 60 Query: 56 ME--EAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTR 113 ++ AP M + ED +A + +S + R DPVRMY+REMGTVELLTR Sbjct: 61 VDPERAPTGAYAMRKDRLRKED---SALRADTSQLGTVIRIDDPVRMYLREMGTVELLTR 117 Query: 114 EGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEA---------EEARLSDLIT- 163 EGEI+IA+RIE+G QV ++ P ++ +R+ EE D+I Sbjct: 118 EGEIEIARRIEEGRMQVHEAICLCPSTFREIMLLGERIIQIRDEAMELGEEPSFRDIIDV 177 Query: 164 --------------GFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDD 209 + + E+D P T + Q DG Sbjct: 178 DEKVVNSAAIKEYENRMSRSEEDDDEPVETEPKLDGEQLTEAIKARTATPDGTPMQETVI 237 Query: 210 NSID-PELAREKFAELRAQ---YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFR---LV 262 + E A F E + ++ + + + A L + + Sbjct: 238 TKEEQLEEALFHFGEAKKLHDDFIEVKKKLAKRPNDKALLLRSREVLDAMLLELVSIPFS 297 Query: 263 PKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAM 322 P+Q D LV + +++VR ER I +E +MP+K F+ F +ET++ W + + Sbjct: 298 PRQLDQLVQRFKNAVEKVRRFERSIRDYALE-ARMPRKLFLETFPVDETNERWIDELMKQ 356 Query: 323 NK--PWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMV 380 NK W + +V+ ++ ++L+++E+ET + + ++KD+ R++++GEAK R+AK+EM+ Sbjct: 357 NKDAAWVTAIEEVTGKIKENQRRLRRVEQETEMGVVELKDVARKLTMGEAKMRQAKREMI 416 Query: 381 EANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAIT 440 EANLRLVISIAKKYTNRGL FLDLIQEGNIGLMKAV+KFE+RRGYKFSTYATWWIRQAIT Sbjct: 417 EANLRLVISIAKKYTNRGLGFLDLIQEGNIGLMKAVEKFEWRRGYKFSTYATWWIRQAIT 476 Query: 441 RSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKI 500 RSIADQARTIRIPVHMIETINK+ R+SRQ+ QE+GREPTPEELAE + +P +K+ ++L++ Sbjct: 477 RSIADQARTIRIPVHMIETINKMMRVSRQIAQEIGREPTPEELAEHLELPVEKVLQILEV 536 Query: 501 AKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLR 560 AKEP+S+ETPIGDDEDS LGDF+ED E PLDS +L AT +VL LT RE KVLR Sbjct: 537 AKEPVSLETPIGDDEDSQLGDFVEDDNAENPLDSTIGAALAEATLEVLENLTDREQKVLR 596 Query: 561 MRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 MRFGI MNTD+TLEEVGKQF VTRERIRQIEAKALRKLRHPSRS+ L++F D Sbjct: 597 MRFGIGMNTDHTLEEVGKQFGVTRERIRQIEAKALRKLRHPSRSQKLKTFAD 648 >UniRef50_P46400 RNA polymerase sigma factor rpoD n=5 Tax=Alphaproteobacteria RepID=RPOD_RHOCA Length = 674 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 306/654 (46%), Positives = 390/654 (59%), Gaps = 50/654 (7%) Query: 5 PQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADD 64 Q+ +K ++ KE+GY+T ++N +P + V +QIED++ M+++MGI V+E + Sbjct: 24 SQAAVKRMIGEAKERGYITIDQLNAVMPPETVSGEQIEDVMSMLSEMGINVVEGEEVEES 83 Query: 65 LMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIE 124 + E A V + + RT DPVRMY+REMG+VELL+REGEI IAKRIE Sbjct: 84 EGGEVVETGSGSREIA--VAGAAGETLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIE 141 Query: 125 DGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLIT-------------------GF 165 G N + + E P + D + +EE L D+I G Sbjct: 142 AGRNTMIAGLCESPLTFQAITIWRDELLSEEILLRDVIDLEATFGRSLDGDEGMEGMEGI 201 Query: 166 VDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDS---------ADDDNSIDPEL 216 P E T G+ + DE E + DG+ S + S+ Sbjct: 202 EGPVVEG--LDLETAEGAAPAARRPASDEPEYDADGNPISRIDEEEDDDDSSNMSLAAME 259 Query: 217 AREKFAELRAQYVVTRDTIK----AKGRSHATAQE-------EILKLSEVFKQFRLVPKQ 265 A K L ++ RD K R AT E E ++ + L+ + Sbjct: 260 AALKPKVLETLELIARDYAKLAEMQDLRMSATLNEDGTFSVAEEAAYQKLRSEIVLLVNE 319 Query: 266 FDYLVNSMRVMMDRVRTQERLIMKL------CVEQCKMPKKNFITLFTGNETSDTWFNAA 319 N + ++D++ R IM + + ++ ++ FI + G E TW + Sbjct: 320 LHLHNNRIEALIDQLYGINRKIMSIDSGMVKLADAARINRREFIDEYRGYELDPTWMDRM 379 Query: 320 IAM-NKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKE 378 A + W ++V ++ Q+ + G+ I + + I ++ GE +AR+AKKE Sbjct: 380 SAKPARAWVTLFEKSRDKVEDLRHEMAQVGQYVGVDISEFRRIVNQVQKGEKEARQAKKE 439 Query: 379 MVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQA 438 MVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQA Sbjct: 440 MVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQA 499 Query: 439 ITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVL 498 ITRSIADQARTIRIPVHMIETINKL R RQML E+GREPTPEELAE++ MP +K+RKV+ Sbjct: 500 ITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKVRKVM 559 Query: 499 KIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKV 558 KIAKEPIS+ETPIGD+EDS LGDFIED LPLDSA E+L+ T VLA LT RE +V Sbjct: 560 KIAKEPISLETPIGDEEDSQLGDFIEDKNAILPLDSAIQENLKETTTRVLASLTPREERV 619 Query: 559 LRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 LRMRFGI MNTD+TLEEVG+QF VTRERIRQIEAKALRKL+HPSRS LRSFLD Sbjct: 620 LRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD 673 >UniRef50_D1ASA0 RNA polymerase sigma factor n=9 Tax=Anaplasmataceae RepID=D1ASA0_ANACI Length = 649 Score = 505 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 258/631 (40%), Positives = 370/631 (58%), Gaps = 43/631 (6%) Query: 6 QSQLKLLVTRG-KEQGYLTYAEVNDHLPEDIV-DSDQIEDIIQMINDMGIQVME--EAPD 61 + +K L+T+G K+ G +T+ +++D L +D V S+ I++ I ++ D GI V+E + + Sbjct: 37 KELVKNLITKGIKQGGVITFDDISDALSDDDVVSSESIDETISLLQDSGIGVLEQSDEEE 96 Query: 62 ADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAK 121 AD + EN A ++ E+ + L + G+T DP+RMY+ EM +VELL+REGEI+IAK Sbjct: 97 ADAAVSEENAAKDEEDESGMRSL-----DFGQTDDPIRMYLCEMSSVELLSREGEIEIAK 151 Query: 122 RIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHV 181 RI+ + S+ E P + + D + ++ L DLI +D N Sbjct: 152 RIKSEKVNMLRSLIEAPMVLRTFMSWRDDLVNQQVMLRDLID--LDANYRGGAPQQEFEE 209 Query: 182 GSELSQEDLDDDEDED--------------EEDGDDDSADDDNSIDPELAR------EKF 221 G E + ++ D ED D G+ + ++++ P++ E Sbjct: 210 GEEYGEREMADPEDSDVGHEGSDDDDEGEDASVGNASILEMESALLPKVISILDATIESA 269 Query: 222 AELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVR 281 ++ RD+ K +++ E I E+ Q +L + + + + Sbjct: 270 EKILEMKKRKRDSGKCDEKAYNELHENIW---ELVSQMKLSDPAVLSVTQQIYNLSKAIA 326 Query: 282 TQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRAL 341 +E +M L VE + +K+F+ + N + W L + + Sbjct: 327 AEEVALMSL-VESYGVDRKSFLEAYNNNT-----VFEQADASPEWKNLLEKEKKTLTDIQ 380 Query: 342 QKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQF 401 K++ + E + K + ++ E A +AK+EM++ANLRLV+SIAKKY+NRGLQF Sbjct: 381 NKVRLLSGED--SPGSFKALVAKIQKHERTANKAKQEMIKANLRLVVSIAKKYSNRGLQF 438 Query: 402 LDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETIN 461 LDL+QEGNIGLMKAVDKF+Y+RGYKFSTYATWW+RQAITR+IADQARTIRIPVHMIET+N Sbjct: 439 LDLVQEGNIGLMKAVDKFDYKRGYKFSTYATWWVRQAITRAIADQARTIRIPVHMIETVN 498 Query: 462 KLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGD 521 K+NR RQML E+GREPT EEL+ R+ M +KIRKV+KI K+P+S+E+PIGDD+ S GD Sbjct: 499 KINRTLRQMLHEIGREPTLEELSARLGMNVEKIRKVMKIVKDPVSLESPIGDDDSSTFGD 558 Query: 522 FIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGID-MNTDYTLEEVGKQF 580 IED P ++A LR T VL+ LT +E ++LRMRFGI D+TLEEVGK F Sbjct: 559 CIEDKRAVKPENAAVLADLREITTKVLSTLTPKEERILRMRFGIGKGGKDHTLEEVGKLF 618 Query: 581 DVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 +VTRERIRQIEAKALRKLRHPSR+ LR F Sbjct: 619 NVTRERIRQIEAKALRKLRHPSRARKLRGFF 649 >UniRef50_D0LP36 RNA polymerase sigma factor n=9 Tax=Bacteria RepID=D0LP36_HALO1 Length = 697 Score = 504 bits (1297), Expect = e-141, Method: Composition-based stats. Identities = 278/610 (45%), Positives = 384/610 (62%), Gaps = 34/610 (5%) Query: 10 KLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVME-------EAPDA 62 K L+ G+ +G++TY EVNDH+PED++ S+QI+ + + + GI +++ +AP Sbjct: 114 KKLIELGRSKGFVTYDEVNDHMPEDVISSEQIDSWLSALGEEGIDIVDSAASARKKAPAD 173 Query: 63 DDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKR 122 DD A + + + + RT+DPVRMY+R+MG+V LLTREGE++IAKR Sbjct: 174 DDDSSGGKVASLNDDKELEKEEEEEDYSYSRTSDPVRMYLRKMGSVSLLTREGEVEIAKR 233 Query: 123 IEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVG 182 IE+G ++ +V A+ L++ ++ +AR ++I + ++E D + Sbjct: 234 IEEGERRMLAAVLNSSVAVEELIDLGKQLADGKARAKEIIKDIDEEDSEVDEQWHVDRIQ 293 Query: 183 SELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSH 242 S +++ A D+ I +LA E++ + RD+I+A Sbjct: 294 SVIAKV--------------RGRATDNEGIREKLADRTLGEVKKK--KYRDSIQANK--- 334 Query: 243 ATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNF 302 + E + +L D +V +++ ++ ++ E I + + MP K Sbjct: 335 -------EAMFEDLSELQLNKSVVDRMVANLKAIIVKLDRAETEI-RAVENRLGMPAKEI 386 Query: 303 ITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDIN 362 + S T + + + A +K++ +EEE ++E+++ Sbjct: 387 RKTLRDMKASATKTRSVGKRFALTVDDFDAFEAAIKNAQKKIKVLEEECRSSVEELRQTF 446 Query: 363 RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR 422 R MS GE A RAK E+VEANLRLV+SIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY+ Sbjct: 447 REMSDGERMAERAKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYK 506 Query: 423 RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEE 482 RGYKFSTYATWWIRQAITR+IADQARTIRIPVHMIETINKL R SR ++QE+GREPTPEE Sbjct: 507 RGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLVRTSRYLVQELGREPTPEE 566 Query: 483 LAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRA 542 +AERM +P DK+RKVLKIAKEPIS+ETPIG++EDSHLGDFIED ++ P D+ + +L Sbjct: 567 IAERMELPLDKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKSVTSPSDAVISVNLAE 626 Query: 543 ATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 602 T VLA LT RE KVLRMRFGI +D+TLEEVG+ F+VTRERIRQIEAKALRKLRHPS Sbjct: 627 QTRKVLATLTPREEKVLRMRFGIGEKSDHTLEEVGQDFEVTRERIRQIEAKALRKLRHPS 686 Query: 603 RSEVLRSFLD 612 RS+ L++F++ Sbjct: 687 RSKRLKAFVE 696 >UniRef50_P17531 RNA polymerase sigma factor rpoD n=70 Tax=Bacteria RepID=RPOD_MYXXA Length = 708 Score = 503 bits (1296), Expect = e-141, Method: Composition-based stats. Identities = 287/617 (46%), Positives = 400/617 (64%), Gaps = 12/617 (1%) Query: 1 MEQNP---QSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVME 57 +E++P + ++K L+ G+E+G+LTY EVND LP DIV SDQI+D++ M D I++++ Sbjct: 98 IEEDPVAERKEVKDLLAAGREKGFLTYDEVNDALPADIVSSDQIDDVMSMFGDNDIEIVD 157 Query: 58 EAPDADDLMLAEN-TADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGE 116 A + + T +E+ +A + G++ DPVR+Y+R+MG+V LLTREGE Sbjct: 158 AQKAAQNNEIKPTVTVEEEKEDADEDEKDEDDEPGGKSNDPVRLYLRKMGSVSLLTREGE 217 Query: 117 IDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAP 176 ++IAKRIEDG +V ++ A+ +L+ ++++ + R+ D+I + E Sbjct: 218 VEIAKRIEDGEKEVLRALLACKVAVEEILDIGNKLKTAKLRVRDVIKDAPEETQSEGAEE 277 Query: 177 TATHVGSELSQEDLDDDE-DEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTI 235 VG + L E ++ E+ + D ++ E+ + + V + + Sbjct: 278 APEEVGEGDAPAQLAQSELNKIEQICKQIERFRKFAQDCDVLEEELSSKKKLTEVRKKEV 337 Query: 236 KAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQC 295 K + + + K+ EV ++ RL KQ D +V +++ +++RV E + L + Sbjct: 338 KQEIK------DLRTKMMEVLEEMRLNKKQVDRIVINLKALIERVDKAEDELRDLE-RRY 390 Query: 296 KMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTI 355 K + + E+L + +V A++K++++EEE L + Sbjct: 391 DCSMKELRPQLKESRENPNIGKKLQKQLNLTPEQLEVLDRDVRTAVRKIKKVEEEANLPV 450 Query: 356 EQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKA 415 E ++ + +GE +A RAK E+VEANLRLV+SIAKKYTNRGLQFLDLIQEGNIGLMKA Sbjct: 451 ESLRRNYDAIRLGERRAERAKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKA 510 Query: 416 VDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMG 475 VDKFEY+RGYKFSTYATWWIRQAITR+IADQARTIRIPVHMIETINKL R SR ++QE+G Sbjct: 511 VDKFEYKRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQEIG 570 Query: 476 REPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSA 535 REPTPEE+AE+M +P DK+RKVLKIAKEPIS+ETPIG++EDSHLGDFIED +L P D+ Sbjct: 571 REPTPEEIAEKMELPLDKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKSLVSPADAV 630 Query: 536 TTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKAL 595 +L T VLA LT RE KVLRMRFGI +D+TLEEVG+ F+VTRERIRQIEAKAL Sbjct: 631 INMNLAEQTRKVLATLTPREEKVLRMRFGIGEKSDHTLEEVGQDFEVTRERIRQIEAKAL 690 Query: 596 RKLRHPSRSEVLRSFLD 612 RKLRHPSRS+ LRSF++ Sbjct: 691 RKLRHPSRSKRLRSFVE 707 >UniRef50_Q1RKH7 RNA polymerase sigma factor rpoD n=19 Tax=Bacteria RepID=RPOD_RICBR Length = 641 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 263/614 (42%), Positives = 374/614 (60%), Gaps = 36/614 (5%) Query: 20 GYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLAENTADEDAAEA 79 G +TY ++N LP D ++I+ ++ ++ + +++ D D + ++ E+ + Sbjct: 24 GSVTYNDINRALP-DGTSVEEIDKVMFRFSEAEVDILDTNED--DAIKIDDMEMEEGFKI 80 Query: 80 AAQVL-----SSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSV 134 + + + E IG T DPVR+Y+++MG V+LLTRE E++IAKRIE+G + ++ Sbjct: 81 STNIDHEPEDETEEENIGTTDDPVRLYLKDMGGVDLLTRENEVEIAKRIEEGRKTLIAAL 140 Query: 135 AEYPEAITYLLEQY-DRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDD 193 P A+ + Y D V L DLI + +++ S++D + D Sbjct: 141 CRSPIAMDKFRKWYADLVNENNMLLRDLIDLESNMMHDDET---------SESEDDHNSD 191 Query: 194 EDEDEEDGDDDSADDDNSIDPELAR------EKFAEL----RAQYVVTRDTIKAK----- 238 +E+E+D D D ++ S+ + E+ ++ + T+ + + Sbjct: 192 HEEEEQDHDHDHEENILSMSKVETQILPNIIERMKKIAFICEELLIETKKSFEKSAGPKI 251 Query: 239 GRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMP 298 ++ + + L + K+ + +++ M + + +E +KL E+ + Sbjct: 252 LQNSKKYNDNLELLISEVSEIHFNSKRTEEILSEMYRINRDLINKETAFLKLA-EKYGIT 310 Query: 299 KKNFITLFTGNETSDTWFNAAIAMNKP-WSEKLHDVSEEVHRALQKLQQIEEETGLTIEQ 357 ++NF+ + G + W + K W E L S+ + + + +L IE TGL + Sbjct: 311 RQNFLDEYIGAVINAAWKEKMLKNKKAGWKELLTKESDYIDQMIAELSAIEINTGLLVND 370 Query: 358 VKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD 417 K + + E + +AKK+M+EANLRLVISIAKKY NRGLQFLDLIQEGNIGLMKAVD Sbjct: 371 FKKLVNAIQKSERQTLQAKKDMIEANLRLVISIAKKYANRGLQFLDLIQEGNIGLMKAVD 430 Query: 418 KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE 477 KFEYRRGYKFSTYATWWIRQAITR+IADQARTIRIPVHMIETINK+ R SRQML E+G E Sbjct: 431 KFEYRRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKIIRTSRQMLNELGYE 490 Query: 478 PTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGD-DEDSHLGDFIEDTTLELPLDSAT 536 PTP E+A R+ MP DK+RKV+KIAKEPIS+E P+GD D++S+LGDFIED P+D+A Sbjct: 491 PTPAEIAARLSMPIDKVRKVMKIAKEPISLENPVGDGDDNSYLGDFIEDKNAVAPIDAAI 550 Query: 537 TESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALR 596 +LR T VLA LT RE +VLRMRFGI MNTD+TLEEVG+QF VTRERIRQIE+KALR Sbjct: 551 QSNLREVTTRVLATLTPREERVLRMRFGIGMNTDHTLEEVGQQFKVTRERIRQIESKALR 610 Query: 597 KLRHPSRSEVLRSF 610 KL+HP RS+ L SF Sbjct: 611 KLQHPIRSKKLNSF 624 >UniRef50_Q3J9H0 RNA polymerase sigma factor n=2 Tax=Nitrosococcus oceani RepID=Q3J9H0_NITOC Length = 579 Score = 496 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 252/609 (41%), Positives = 370/609 (60%), Gaps = 37/609 (6%) Query: 6 QSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMIND-MGIQVMEEAPDADD 64 Q +LK L+ +GK QG LT E+ D++ +++ DSD+ E + + + G+ EA D Sbjct: 7 QEELKRLILKGKAQGLLTEEELQDYIIQEVEDSDEAETMAHLFHHHQGLDEFNEA--LDS 64 Query: 65 LMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIE 124 +L +N+++E+ AE + G +D V YMREMG LLTRE EI +AK IE Sbjct: 65 TLLLKNSSEEEIAETLPTLEG---ESTGAVSDMVYAYMREMGAHALLTREEEITLAKAIE 121 Query: 125 DGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSE 184 G++Q ++ P A+ L+ + V + RL D +TGF Sbjct: 122 TGLSQSTEALGNCPAAVAELVRWAEEVATGKGRLKDWLTGFT------------------ 163 Query: 185 LSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHAT 244 E + ++ D E + + +R Y T+ +G + Sbjct: 164 -------------EPEIEETEIKDGKESSLEATSKHLSRVRTLYGNLEATLAQEGVASPR 210 Query: 245 AQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFIT 304 A+E KL+ F+ RL+P + + L ++ + + +TQE++I C+ Q +M +++F Sbjct: 211 ARELRRKLAREFQFLRLIPSRINQLTQLVQGWISKAQTQEQIIRSCCIHQGEMSQEDFWH 270 Query: 305 LFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRR 364 F+ T W + +A ++ + L ++ + A L Q+E E GL ++++K I++R Sbjct: 271 NFSSGTTHPQWLDDLLAHSRIDRQGLQTQAKTLRAAQAVLLQVEVEAGLPLDELKAIHQR 330 Query: 365 MSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRG 424 + + +A+RAK +MVEANLRLV+S+AKKY NRGL FLDLIQEGNIGLMKAVDKF+Y RG Sbjct: 331 LVRSQFQAQRAKAQMVEANLRLVVSVAKKYRNRGLTFLDLIQEGNIGLMKAVDKFDYHRG 390 Query: 425 YKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELA 484 YKFSTYA WWIRQAITR+I DQ+RTIRIPVH++E ++KLNR S Q+ QE GRE PEELA Sbjct: 391 YKFSTYAHWWIRQAITRAIDDQSRTIRIPVHVMEKLSKLNRASYQLRQEKGREGRPEELA 450 Query: 485 ERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAAT 544 ER+ + E +I ++ +IAK+PIS+ETP+G DEDS LG+ +ED + P++ A T L+ Sbjct: 451 ERLALSEQQIHRMHEIAKQPISLETPLGKDEDSQLGELMEDEQVPNPMEVAITAGLQTGA 510 Query: 545 HDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRS 604 +LA L+ REA+V+ MRFGI M+TD+TL EV +QFD++RERIRQIEA+AL KLR S Sbjct: 511 QQLLAALSPREAQVVAMRFGIGMDTDHTLGEVAQQFDLSRERIRQIEAQALGKLRRLGHS 570 Query: 605 EVLRSFLDD 613 + LR+FL+D Sbjct: 571 KALRNFLED 579 >UniRef50_P61540 RNA polymerase sigma factor rpoD n=20 Tax=Bacteria RepID=RPOD_LEPIC Length = 585 Score = 486 bits (1252), Expect = e-136, Method: Composition-based stats. Identities = 236/614 (38%), Positives = 378/614 (61%), Gaps = 35/614 (5%) Query: 3 QNPQS--QLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP 60 +N QS +++ +++ GK G ++Y ++N+ LP+ I++S++I+D ++++MGI+++EE Sbjct: 2 ENLQSMPEVQKIISLGKANGEVSYDDINEILPDKILNSEKIDDFFTLLHEMGIEIVEEYT 61 Query: 61 DADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA 120 + L A +D ++ A + S S G + DP+++Y+RE+G V L++ E E+ +A Sbjct: 62 -RNTLEPASTLVPKDDSKPARKKKESSASTSG-SEDPIKLYLREIGKVSLISGETEVFLA 119 Query: 121 KRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATH 180 KRIE G ++ ++ ++ ++ +++ ++ DLI + L H Sbjct: 120 KRIEKGEKIIEETILSSSILRANYIKLLPKIRSKKIKVYDLIR----VDKMYALNAEEAH 175 Query: 181 VGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGR 240 EL +++ +++++ + S S +K+ E + + + + I R Sbjct: 176 KLEELFFKNILVIQEQEKVLQEAVSKIRKYS----ETSKKYKEFKEKIDASTEIIHNAIR 231 Query: 241 SHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPK- 299 +Q+EI K+S ++ M+ R++ +R +K+ + + + Sbjct: 232 ELGVSQKEIQKIS-----------------QKIKSMVFRIKEIDRHFLKIKAQYGQDVRD 274 Query: 300 -KNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQV 358 K F NE D + +N +++ +V +++ +KL+++E+E G T++++ Sbjct: 275 IKAFNRFIEKNEKLDD-IEVKMGVN---IDEVREVIKDIRNNERKLRRMEQEAGSTVQEI 330 Query: 359 KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK 418 KD ++ GE + +AKKE+V+ANLRLV+SIAK+Y NRG+ F DLIQEGNIGL+KAVDK Sbjct: 331 KDWGEKIIKGEREISQAKKELVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDK 390 Query: 419 FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP 478 FEY++GYKFSTYATWWIRQAITR+I+DQARTIR+PVHMIE +NK+ R +R +QE GR+P Sbjct: 391 FEYKKGYKFSTYATWWIRQAITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDP 450 Query: 479 TPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTE 538 EE+AER+ P K++ V +A+EPIS+E P+G +EDS LGDFI DT +E P+++A + Sbjct: 451 NNEEIAERLGWPVQKVKMVKNVAREPISLEIPVGSEEDSELGDFIPDTEVETPVNAAASS 510 Query: 539 SLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKL 598 L VL L ARE KV+RMRFG+D TLEEVG QF VTRERIRQIEAKALR+L Sbjct: 511 ILAEQIRQVLHTLPAREQKVIRMRFGLDDGYPQTLEEVGYQFKVTRERIRQIEAKALRRL 570 Query: 599 RHPSRSEVLRSFLD 612 RHPSRS+ L+ ++D Sbjct: 571 RHPSRSKKLKDYID 584 >UniRef50_B0U099 RNA polymerase sigma factor n=18 Tax=Francisella RepID=B0U099_FRAP2 Length = 578 Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 277/612 (45%), Positives = 386/612 (63%), Gaps = 40/612 (6%) Query: 3 QNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDI-VDSDQIEDIIQMINDMGIQVMEEAPD 61 ++ S LK L+ GKE+GYLT A++ D LP D+ D + E+I ++ D GI V + P+ Sbjct: 4 EDLLSDLKDLMVDGKERGYLTRADILDALPGDVSEDPKKYEEIEAILIDAGIDVYDRTPE 63 Query: 62 ADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAK 121 D + + ++++ G+T+DP+RMYMREMG V+LL ++GE DIA Sbjct: 64 LD-----------EDDDERKVSEANLDDLKGKTSDPIRMYMREMGIVDLLDKKGETDIAI 112 Query: 122 RIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHV 181 RIE+G +V ++ YP + +E++ +E + + + E++ P A ++ Sbjct: 113 RIEEGTTEVFSTILSYPIVVKTYIERFRELEEKA------VDYMTSQDIEDE--PVAKYI 164 Query: 182 GSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRS 241 D++ +E+ +DD + ID + A E F L + ++ Sbjct: 165 RFNEIMAGFSDEQVTEEKVAEDDHDE---KIDTQRAYEFFVNLEKMFEEYQEKPNK---- 217 Query: 242 HATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKN 301 + K+ + F+ RL LV+ +R+ RV+ ER I++LCVE+ K P++ Sbjct: 218 -----KLYSKIVKEFECLRLSTSHLQKLVDYIRLPYARVKEFERKILRLCVERSKTPRQE 272 Query: 302 FITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDI 361 FI ++ S W + K + +E+H +++ Q + + IE++K + Sbjct: 273 FIKVYEIG--SIEWLPSLTKKYK----FTDNTVKEIHNLTKQINQFQNLMMMKIEELKKV 326 Query: 362 NRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY 421 N +S EAK +AKKEM+EANLRLV+S AKKYTNRGL FLD+IQEGNIGLMKAVDKF+Y Sbjct: 327 NVEISKSEAKITQAKKEMIEANLRLVVSEAKKYTNRGLHFLDIIQEGNIGLMKAVDKFDY 386 Query: 422 RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPE 481 R+G+KFSTYATWWIRQAITRSIADQARTIR+PVHMIETINK+NRI RQ+LQE GRE T E Sbjct: 387 RKGFKFSTYATWWIRQAITRSIADQARTIRVPVHMIETINKVNRIKRQILQEKGREATEE 446 Query: 482 ELAERM-LMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESL 540 E+ E M +DK++K+L I+ PISME+PIGDDEDS +GDFIED P+++A E+L Sbjct: 447 EIIEYTPNMTKDKLKKILNISHTPISMESPIGDDEDSTVGDFIEDKNNYSPIEAANLENL 506 Query: 541 RAATHDVLAG-LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLR 599 R A +++ LT REAKVL MRFGI MNTD+TLEEVGKQF+VTRERIRQIEAKALRKL+ Sbjct: 507 REAIKELIDTGLTEREAKVLMMRFGIGMNTDHTLEEVGKQFNVTRERIRQIEAKALRKLK 566 Query: 600 HPSRSEVLRSFL 611 HPSRS L++FL Sbjct: 567 HPSRSAFLKTFL 578 >UniRef50_Q5GSP3 RNA polymerase sigma factor n=6 Tax=Wolbachia RepID=Q5GSP3_WOLTR Length = 649 Score = 482 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 221/649 (34%), Positives = 367/649 (56%), Gaps = 45/649 (6%) Query: 2 EQNPQSQLKLLVTRG-KEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP 60 ++ + ++ LVT+ K+ G++T+ ++ND L ++ + SD I+D I ++ D GI ++E + Sbjct: 7 SEDKKKIIRDLVTKSIKKGGFITFDDINDKLSDENLSSDFIDDTISLLQDSGINILESSE 66 Query: 61 DADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA 120 D ++ + + LS+ + + + DPVR+Y+++M +V+LL+R EI+IA Sbjct: 67 DEEEAPSNSDDS----KLDDDDALSNTTTTLVQNDDPVRVYLQDMSSVKLLSRTDEIEIA 122 Query: 121 KRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATH 180 K+IE + + ++ E + + D + + L ++I N++ + P Sbjct: 123 KKIESEKHNMLRAIIETSVTLKMIKAWRDDLSSGSLLLREIIDLDAIYNSDFNAIPKEES 182 Query: 181 V-------GSELSQEDLDDDE--DEDEEDGDDDSADDDNSIDPELAR-------EKFAEL 224 SE E DDE ++DE D + + +NS + + E +L Sbjct: 183 EESIEDDKDSENVSEGTKDDEYCEDDEIDSKKGNDEKENSNEDINSANLNVSILEMENDL 242 Query: 225 RAQYVVTRDTIKAKGRSHATAQEEI---LKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVR 281 + +V D I T +++ L+ ++ Q + Q ++ + ++ Sbjct: 243 LPKVIVALDEIITLADEALTLRKDPSGGLRYQNLYDQIWSIVLQIKLSDTAVAKITQKLY 302 Query: 282 TQERLIM----KLCVE--QCKMPKKNFITLF------------TGNETSDTWFNAAIAMN 323 R IM L E + + +++F+ ++ + ++S+ F + Sbjct: 303 NINRSIMLEEANLISEAKKYNIDRESFLKVYADVLLRYKLEEISSLKSSENQFCFTGELK 362 Query: 324 KPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEAN 383 + + + D E + L ++Q +E +++ K++ +R E + AK+ M++AN Sbjct: 363 NKFVKFIDDNFEHIADTLNNIKQHIQEDN--VQEFKELIKRTQKHEREVSEAKQGMIKAN 420 Query: 384 LRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSI 443 LRLV+SIAKKY+NRGL LDLIQEGNIGLMKAVDKF+Y+RGYKFSTY TWW+RQ+ITR+I Sbjct: 421 LRLVVSIAKKYSNRGLALLDLIQEGNIGLMKAVDKFDYKRGYKFSTYGTWWVRQSITRAI 480 Query: 444 ADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKE 503 +Q++ +RIPVHM+E I+K+NR R++ EMGREPT EEL+ + MP ++IRKV+KIA++ Sbjct: 481 PEQSKVVRIPVHMVEIISKINRALRKLTHEMGREPTLEELSMELGMPLERIRKVMKIARD 540 Query: 504 PISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRF 563 P+S++ P G D+ S GD IED + P D+A LR T ++LA LT +E +++RMRF Sbjct: 541 PVSLDAPTGKDDSSTFGDCIEDKRVSKPEDAAILTDLRCITTNLLATLTPKEERIIRMRF 600 Query: 564 GID-MNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 G+ ++TLEE+G F VTRERIRQ+E+KALRKL+HP R+ LR F Sbjct: 601 GLGKDCKEHTLEEIGCIFKVTRERIRQVESKALRKLKHPCRARKLRGFF 649 >UniRef50_C1F1D9 RNA polymerase sigma factor n=3 Tax=Acidobacteria RepID=C1F1D9_ACIC5 Length = 597 Score = 471 bits (1213), Expect = e-131, Method: Composition-based stats. Identities = 258/613 (42%), Positives = 366/613 (59%), Gaps = 60/613 (9%) Query: 1 MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP 60 ++ + L+ L+ GKE+GYLTY EVND +P D+ + ++D++ I GI ++E +P Sbjct: 41 LDDKYEEDLQKLIDAGKEKGYLTYNEVNDLIPGDMTSPEDLDDLMTTIGTQGIDILEGSP 100 Query: 61 DADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA 120 + + +D+ + L +T DPVRMY+REMGTV LLTREGE++IA Sbjct: 101 KLGNDGFDDEDSDDVELDLTPGTLE-------KTNDPVRMYLREMGTVPLLTREGEVEIA 153 Query: 121 KRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATH 180 KRIE G +V +V+ P I ++ + + + +++ Sbjct: 154 KRIERGQLRVMKAVSRSPIVIREIIALGEDLRRGVRSVKEVVI----------------- 196 Query: 181 VGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGR 240 D++E +E + ++K L + + +K + + Sbjct: 197 ---------FDEEEITEEVLAARVRQTANKIDGIVKHQKKIQALEEKMQAAKSKVKEQRK 247 Query: 241 SHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKK 300 E++ ++ + + + ++ L++ + +D +RT ER I L + + + Sbjct: 248 LRWLIAREMVFITRIVRDLKYTNQERKRLLDKVNKTVDSMRTLERQIRSLDQKYDQSKSE 307 Query: 301 NFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKD 360 + + + L+++EEE GL+I +K Sbjct: 308 ELKKEYRRQQKN---------------------------CKTDLEKLEEEAGLSIADLKR 340 Query: 361 INRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE 420 R + G+ A +AK+E++EANLRLV+SIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE Sbjct: 341 TQREIIQGDMDAEQAKRELIEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE 400 Query: 421 YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTP 480 YRRGYKFSTYATWWIRQAITR+IADQARTIRIPVHMIETINKL R SRQ++QE+GREPT Sbjct: 401 YRRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRQLVQELGREPTS 460 Query: 481 EELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESL 540 EE+A RM +P K+RKVLKIA+EPIS+ETPIG++EDSHLGDFIED+ P ++ + +L Sbjct: 461 EEIARRMDIPVAKVRKVLKIAQEPISLETPIGEEEDSHLGDFIEDSQAVSPSEAVISVNL 520 Query: 541 RAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 600 + T VL LT RE +V++MRFG++ +++TLEEVG+ F VTRERIRQIEAKALRKLRH Sbjct: 521 KEYTSQVLRTLTPREERVIKMRFGLEDGSEHTLEEVGQSFQVTRERIRQIEAKALRKLRH 580 Query: 601 PSRSEVLRSFLDD 613 PSRS LR+F+D+ Sbjct: 581 PSRSRKLRAFVDN 593 >UniRef50_A9F3S6 RNA polymerase sigma factor n=21 Tax=Bacteria RepID=A9F3S6_SORC5 Length = 639 Score = 471 bits (1213), Expect = e-131, Method: Composition-based stats. Identities = 278/616 (45%), Positives = 376/616 (61%), Gaps = 37/616 (6%) Query: 2 EQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPD 61 + + L+ LV GK +G+LTY EVND LP D+ DQ++D++ + D I++++ A Sbjct: 55 SEKDRKTLEKLVETGKSKGFLTYDEVNDALPADVA-PDQLDDVVGALGDEDIEIVDGATQ 113 Query: 62 ADDLMLAENTADEDAAEAAAQVLSSVESE----IGRTTDPVRMYMREMGTVELLTREGEI 117 + + ADE+A E V E E ++ DPVRMY+R+MG+V LLTREGE+ Sbjct: 114 VK--IAPKRIADEEAGEKKLVVTPDREEEDVDYYSKSNDPVRMYLRKMGSVSLLTREGEV 171 Query: 118 DIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPT 177 +IAKRIE G +V ++ + P A+ +++ +++ + R+ +LI Sbjct: 172 EIAKRIEIGEQKVNAAILDSPIAVREIIDLGEKLRKHKIRVKELIK-------------- 217 Query: 178 ATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRA-QYVVTRDTIK 236 E+ D + DE+E D D + E E + + V R I Sbjct: 218 --------DAENDDQEFDEEEADRRIIRLIDKVKRVDKKKAELLEERKEVKTEVRRKQID 269 Query: 237 AKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCK 296 + +L ++ RL + D +V ++ ++ +V E +L + Sbjct: 270 V------EVTQATAELVTTLEEMRLNKRTIDKIVQKLKSLISKVEKAEAGATELE-RRTG 322 Query: 297 MPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIE 356 + K + + E+L+D + A + L+++EEE + + Sbjct: 323 LSKGELKRELIKVKGNRALEGRLAKKLNVQREELNDFESTIKNAQKGLKKVEEELNIDVA 382 Query: 357 QVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV 416 ++D + GE A RAK E+VEANLRLV+SIAKKYTNRGLQFLDLIQEGNIGLMKAV Sbjct: 383 AIRDTYENIREGERMAERAKAELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAV 442 Query: 417 DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGR 476 DKFEY+RGYKFSTYATWWIRQAITR+IADQARTIRIPVHMIETINKL R SR ++QE GR Sbjct: 443 DKFEYKRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQEYGR 502 Query: 477 EPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSAT 536 EPTPEE+AE+M +P DK+RKVLKIAKEPIS+ETPIG++EDSHLGDFIED ++ P ++ Sbjct: 503 EPTPEEIAEKMELPLDKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKSVISPAEAVI 562 Query: 537 TESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALR 596 +L T VL LT RE KVLRMRFGI +D+TLEEVG+ F+VTRERIRQIEAKALR Sbjct: 563 NMNLAEQTRKVLKTLTPREEKVLRMRFGIGEKSDHTLEEVGQDFEVTRERIRQIEAKALR 622 Query: 597 KLRHPSRSEVLRSFLD 612 KLRHPSRS+ L+SF+D Sbjct: 623 KLRHPSRSKQLKSFID 638 >UniRef50_C0R506 RNA polymerase sigma factor n=4 Tax=Wolbachia RepID=C0R506_WOLWR Length = 650 Score = 467 bits (1201), Expect = e-130, Method: Composition-based stats. Identities = 226/650 (34%), Positives = 362/650 (55%), Gaps = 48/650 (7%) Query: 3 QNPQSQLKLLVTRG-KEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPD 61 ++ + +K LVT+ K+ G++T+ ++ND L ++ SD I+D I ++ D GI V+E + D Sbjct: 8 EDKKKIIKDLVTKSIKKGGFITFDDINDKLSDENFSSDFIDDAISLLQDSGINVLESSED 67 Query: 62 ADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAK 121 +D+ + + D + + V +++ + DPVR+Y+++M +V+LL+R EI+IAK Sbjct: 68 EEDIPSNSDDSKLDDDDTSPNVTATL----VQNDDPVRIYLQDMSSVKLLSRADEIEIAK 123 Query: 122 RIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHV 181 +IE + + ++ E + + D + L ++I N++ ++ P Sbjct: 124 KIESEKHNMLRAIIETSVTLKVIKVWRDDLSNGALLLREIIDLDAIYNSDFNVVPKEESE 183 Query: 182 GSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPEL----------------AREKFAELR 225 SE S ED++D ED E+ + D+ + E ++L Sbjct: 184 ESEESAEDVEDSEDVSEDAEYCSDDEKDSKKSDDEKDGNNEDISSVNLNVSILEMESDLL 243 Query: 226 AQYVVTRDTIKAKGRSHATAQEEILKLSEVF-----------KQFRLVPKQFDYLVNSMR 274 + +V D I ++ S Q +L + + Sbjct: 244 PKVIVALDEIITLTNEALILRKNSKNFSNELENLYNQIWSIALQIKLSDAAVARITQELY 303 Query: 275 VMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGN------------ETSDTWFNAAIAM 322 + + +E ++ + + +++F ++ + ++ + + Sbjct: 304 KINRSITLEEANLIA-EARKYDIDRESFYKVYDDVLLKHELKKISLLKINENQSSFTGEL 362 Query: 323 NKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEA 382 + + D SE + L ++Q +E +++ K++ +R+ E + AK+EM++A Sbjct: 363 KNKFLRFIDDNSEHIASTLNGIKQHIQEDN--VQEFKELIKRIQKHEREVSEAKQEMIKA 420 Query: 383 NLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRS 442 NLRLV+SIAKKY+ RGL LDLIQEGNIGLMKAVDKF+Y+RGYKFSTY TWW+RQ+ITR+ Sbjct: 421 NLRLVVSIAKKYSKRGLDLLDLIQEGNIGLMKAVDKFDYKRGYKFSTYGTWWVRQSITRA 480 Query: 443 IADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAK 502 I +Q++ +RIPVHM+E I+K+NR R+M EMGREPT EEL+ + MP ++IRKV+KIA+ Sbjct: 481 IPEQSKVVRIPVHMVEIISKINRALRKMTHEMGREPTLEELSVELTMPLERIRKVMKIAR 540 Query: 503 EPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMR 562 +P+S+E P G D+ S GD IED + P D+A LR T +VLA LT +E ++LRMR Sbjct: 541 DPVSLEAPTGKDDSSTFGDCIEDKRVSRPEDAAILADLRGITTNVLATLTPKEERILRMR 600 Query: 563 FGID-MNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 FG+ ++TLEEVGK F+VTRERIRQIEAKALRKL+HPSR+ LR F Sbjct: 601 FGLGKDGKEHTLEEVGKIFNVTRERIRQIEAKALRKLKHPSRARKLRGFF 650 >UniRef50_Q1LEA3 RNA polymerase sigma factor n=1 Tax=Cupriavidus metallidurans CH34 RepID=Q1LEA3_RALME Length = 617 Score = 464 bits (1194), Expect = e-129, Method: Composition-based stats. Identities = 217/627 (34%), Positives = 351/627 (55%), Gaps = 27/627 (4%) Query: 1 MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP 60 M L LV G E+G+LT+ E++D LP+ I +++ ++G+Q++E Sbjct: 1 MNNTHPESLVALVALGSERGFLTHGEISDALPDSDFG-----QIQRVLEELGVQIVERTL 55 Query: 61 DADDLMLAEN----TADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGE 116 + + L E+ DE E AA + + RTTDPV++Y+RE+GT+ LLTRE E Sbjct: 56 ANEPIRLEEHADALVVDEAVIEEAAAAVMQADGREARTTDPVQLYLREIGTIPLLTREDE 115 Query: 117 IDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAP 176 + IA+R E + ++ + P + LL D +E E + DLI + +++ Sbjct: 116 VAIARRHEIAVTEMVAEMVSCPLVVYELLTMADEIERGEMAVDDLIDHW------DEVPA 169 Query: 177 TATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIK 236 A +V + E + DD+ G D D S AR A L ++ + ++ Sbjct: 170 AAVNVPAIEMSEAVQDDDPAPGAAGVDLEETDPVSTGASTARSS-AALESEVIARLAIVR 228 Query: 237 AK-------GRSHATAQEEILKLSEVFKQF---RLVPKQFDYLVNSMRVMMDRVRTQERL 286 A+ R A + + L+ + + L + + ++ ER Sbjct: 229 ARFLDWSRQSRQQAATSDAFVALNAIRAELAVYHFSAAAVARLGQVLSTHIAAIQQAERR 288 Query: 287 IMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMN-KPWSEKLHDVSEEVHRALQKLQ 345 I + +++C + ++ F+ F G+E W A A ++ L E+ ++++ Sbjct: 289 IAGIVIDRCGIAREQFLQTFPGHEIDLGWSEALAAERISGAADALVRAIPEIQAIQREMR 348 Query: 346 QIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLI 405 +E +++ +K++ +R++ A+A+ A+ EM+ +NLRLV+S AKKY +RG+ LDLI Sbjct: 349 VLENRAAMSLGDLKNLGQRVAKARARAQAARDEMIRSNLRLVVSNAKKYLHRGMPLLDLI 408 Query: 406 QEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNR 465 QEGN+GLM+AVD+F+YRRGYKFSTYATWWIRQ ITR+IAD+ TIRIP+H++E + K+NR Sbjct: 409 QEGNLGLMRAVDRFDYRRGYKFSTYATWWIRQGITRAIADKGPTIRIPIHLVEVVGKVNR 468 Query: 466 ISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIED 525 SR++ E G P PE LA R+ + K++ +L + KEP+S+E +G+ D+ L D + D Sbjct: 469 ASRELFHETGEAPAPEALAARLSLSVKKVKAILDLVKEPLSLEMSVGESGDALLWDTLTD 528 Query: 526 TTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRE 585 P +SA SLR + LA L REAK+++MR+G+D TDYTLEE+G+Q+ ++RE Sbjct: 529 ECSASPDESAMRVSLRKDLDEALATLKPREAKIVKMRYGVDAGTDYTLEEIGQQYGLSRE 588 Query: 586 RIRQIEAKALRKLRHPSRSEVLRSFLD 612 R+RQ+E +ALRKLR+P R+ L++ D Sbjct: 589 RVRQLERQALRKLRNPDRAPRLQAHRD 615 >UniRef50_C1SK63 RNA polymerase sigma factor n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SK63_9BACT Length = 626 Score = 461 bits (1185), Expect = e-128, Method: Composition-based stats. Identities = 246/626 (39%), Positives = 376/626 (60%), Gaps = 31/626 (4%) Query: 8 QLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLML 67 ++K ++ GKE+G+LT+ E+N++LP+DI+ ++ I++I+ ++ + I V++ D L Sbjct: 11 EVKSIIALGKEKGFLTFDEINENLPDDILSTELIDEIMMLLAQLKIDVIDSKVDKPGLYS 70 Query: 68 AENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGI 127 A++ + + L E T DPVR+Y++EMG + LL RE EI++AK IE+G Sbjct: 71 ADDD----DDDEDSISLLKEVEESISTDDPVRLYLKEMGNIALLNREEEIEVAKEIEEGQ 126 Query: 128 NQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQ 187 +V +V YP +++ + + RL D+I +AE D + Sbjct: 127 RKVVRAVLLYPNTAMKIMDIARNIRNDSMRLKDIIDIDDGSDAENDDLDAVENENENEEN 186 Query: 188 EDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQE 247 + + E + + + +LA E+ +++ Q++ + I K + + Sbjct: 187 AAEQPEIKQPEPVKTLEEIAAEVEAEQQLAEEREEQIKVQFIEILEDIADKLHKNIDLND 246 Query: 248 EILK---------------------LSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERL 286 +I + +++ + ++ + + N ++ + + + Sbjct: 247 KIKENKCSIDEMLNIKFKMHETVDDITDKLLEIKVNYSKICLIANEIKDAHQAIYDRSKD 306 Query: 287 IMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQ 346 I K+C + ++ + E T M P E + ++ + L + Sbjct: 307 IDKIC---KLIRYTDYTDAVSVTEDELTRACENRGMALPDYEIIVKKYKKAKKG---LDE 360 Query: 347 IEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQ 406 G ++ I+ + +GE + +AK +++EANLRLV+SIAKKYTNRGLQFLDLIQ Sbjct: 361 CINSLGFDKAELDVIHDSLLMGENETEKAKSKLIEANLRLVVSIAKKYTNRGLQFLDLIQ 420 Query: 407 EGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRI 466 EGNIGLMKAV+KFEY+RGYKFSTYATWWIRQAITR+IADQARTIRIPVHMIETINK+ +I Sbjct: 421 EGNIGLMKAVEKFEYKRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKMMKI 480 Query: 467 SRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDT 526 +RQ+ Q+MGREPTPEE++ +M +P +KI+KV+KIAKEP+S+ETPIG+DEDS LGDFIED Sbjct: 481 TRQLQQDMGREPTPEEISSKMDIPVEKIKKVMKIAKEPVSLETPIGEDEDSSLGDFIEDK 540 Query: 527 TLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRER 586 + + P + T L+ T +L L+ REA VL++RFGI+ ++D+TLEEVGKQF+VTRER Sbjct: 541 SAKNPSEEVTYLKLKEHTKQILETLSHREASVLKLRFGIECDSDHTLEEVGKQFNVTRER 600 Query: 587 IRQIEAKALRKLRHPSRSEVLRSFLD 612 IRQIEAKALRKLRHP+RS +L++F + Sbjct: 601 IRQIEAKALRKLRHPTRSRILKTFTE 626 >UniRef50_A4JT57 RNA polymerase sigma factor n=14 Tax=Burkholderia cepacia complex RepID=A4JT57_BURVG Length = 628 Score = 460 bits (1183), Expect = e-128, Method: Composition-based stats. Identities = 195/608 (32%), Positives = 313/608 (51%), Gaps = 11/608 (1%) Query: 7 SQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLM 66 + L L++ G +G++T+ ++ D LP+D ++ M+ ++GI V + A A + Sbjct: 28 AHLHALISTGLTRGFVTHGDIIDALPDDDAHQGGVDATAAMLRELGIAVSDGAHAAGWTL 87 Query: 67 --LAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIE 124 + T A A L++ E RTTDPVR+Y+REMG LLTR+ EI A+RIE Sbjct: 88 DRYFQPTPSARAWAEGAGALAAAELSAPRTTDPVRLYLREMGMTPLLTRDEEIMHAQRIE 147 Query: 125 DGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAE-EDLAPTATHVGS 183 G + P+A+ L+ R+E E R + + +V A+ D+AP + Sbjct: 148 RGRAASVAVLCGDPQALDALVAM--RIEIAEGRTA--ASAYVLSIADISDMAPAGGAAAA 203 Query: 184 ELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHA 243 D D D D A D+ + + A + A R ++ G Sbjct: 204 SPHAGDTPADAGASTRDDD---APADDGLCRHTVLARLAPIDALTAAMRAALETDGAHGL 260 Query: 244 TAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFI 303 + + + + + R+ + + + +R R RT + + E +P Sbjct: 261 AYRACVREAAALLGTLRMSMRALERMSEPLRTHARRQRTLHGRLARTLAE-AGVPHGAAA 319 Query: 304 TLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINR 363 + W + IA + L + E+ A + + + L + + ++ Sbjct: 320 ACVQRDGDHARWLASCIAAHPECEPALTRRAAELVDARDAIARAARTSPLPPDTIALLDA 379 Query: 364 RMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRR 423 R+ E + A+ + +ANLRLV+SIAK+Y +RGL F DLIQEGNIGL+KA+D++++RR Sbjct: 380 RLDTIERAMQPARMGLFDANLRLVVSIAKRYPDRGLPFADLIQEGNIGLLKAIDRYDHRR 439 Query: 424 GYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEEL 483 G++FSTYATWWIRQAIT ++AD RTIR+P H ++ INKL RI+R+ Q G TP EL Sbjct: 440 GFRFSTYATWWIRQAITHALADLGRTIRVPTHTVDAINKLTRIAREHRQRSGAAATPHEL 499 Query: 484 AERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAA 543 A +M P DK+R ++ I KEP+S + P+ + + D D + P D+A LR Sbjct: 500 AVQMGEPLDKVRDLMSIVKEPMSADAPVSPEGEMTFVDVAPDVSTPSPEDAAGAAQLRDT 559 Query: 544 THDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 603 ++ L AREA VLR+R+G+ + +L ++G+Q +++ ER+RQIEA AL +LR Sbjct: 560 IAAMIGRLPAREATVLRLRYGLHADEGCSLRDIGRQLNLSAERVRQIEASALARLRASDG 619 Query: 604 SEVLRSFL 611 +VLR+F+ Sbjct: 620 LDVLRAFI 627 >UniRef50_B3CQ43 RNA polymerase sigma factor n=2 Tax=Orientia tsutsugamushi RepID=B3CQ43_ORITI Length = 615 Score = 454 bits (1167), Expect = e-126, Method: Composition-based stats. Identities = 223/596 (37%), Positives = 339/596 (56%), Gaps = 45/596 (7%) Query: 38 SDQIEDIIQMINDMGIQVMEEAPDADDLMLAENTADEDA----AEAAAQVLSSVESEIGR 93 D+ E + I+D I +++ D L + + +E+ + A + Sbjct: 32 VDESEKLSSKISDSDIN-LDKDFDYTKLGVCPDKIEEEEVVLASNATEGEFEEDLDDNIY 90 Query: 94 TTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEA 153 +TD VR Y+++M LL+REGEI++AK++E+G V + P + L++ Y+ + Sbjct: 91 STDIVRAYLKDMSNTTLLSREGEIELAKQMEEGKKTVIHFICHLPYVMKLLIQWYEDLVH 150 Query: 154 EEARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSID 213 + +LI EL D ED+++ D D D ++ + Sbjct: 151 SRILVRNLI---------------------ELESNIYDQPEDDNQHDYDSDGDCEELQNE 189 Query: 214 P--ELAREKFAELRAQYVVTRDTIKA---------KGRSHATAQEEILKLSEVFKQFRLV 262 P ++ E ++ + V D K + +E K +E+ K+ Sbjct: 190 PLTKVESEILPKILDKMQVVSDLATQLFEVAAHDFKLHKSSCNYQESKKFTELSKELIAA 249 Query: 263 PKQFDYLVNSMRVMMDRVRTQERLIMKL------CVEQCKMPKKNFITLFTGNETSDTWF 316 + S++ +++++ + + I+ E+ K+ + +F+ F N S+ Sbjct: 250 VSNIHFNKQSIKNILNKLYSVNKDIISKEINLLKAAEKYKISRHDFL--FQYNSGSNWLQ 307 Query: 317 NAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAK 376 + W++ L + + + +IE+ L +++ K+I + + GE K R AK Sbjct: 308 KVKLLHQDEWNKFLSKEKDLIKSTIDYFSEIEQAMLLPLKRFKEIIQAIQNGERKVRVAK 367 Query: 377 KEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIR 436 K+MVE+N RLV+ +AK Y NRGL FLDLIQEGNIGLMKAVDK+ Y GYKFST ATWW+R Sbjct: 368 KKMVESNTRLVVHVAKPYVNRGLPFLDLIQEGNIGLMKAVDKYNYLLGYKFSTCATWWVR 427 Query: 437 QAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRK 496 Q+I+R++ADQARTIRIPVHM +TI+K+ R+S+QM E+G EPT E+AE++ MP DK++K Sbjct: 428 QSISRAVADQARTIRIPVHMADTISKIVRVSKQMHNELGYEPTASEIAEKLSMPIDKVKK 487 Query: 497 VLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREA 556 V++IAKEP+S+E PIG+++ S L DFIED LP++ A SLR T L+ LTARE Sbjct: 488 VMRIAKEPVSLENPIGEEDGSCLSDFIEDKNAILPIEEAIKFSLRETTTRALSTLTAREE 547 Query: 557 KVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 +VLR+RFGI + TDYTLEEVG +F VTRER+RQIEAKALRKL+HP RS+ L+SFL Sbjct: 548 RVLRLRFGIGLPTDYTLEEVGGEFKVTRERVRQIEAKALRKLKHPVRSKKLKSFLS 603 >UniRef50_A2WDQ1 RNA polymerase sigma factor n=10 Tax=Proteobacteria RepID=A2WDQ1_9BURK Length = 773 Score = 451 bits (1160), Expect = e-125, Method: Composition-based stats. Identities = 241/503 (47%), Positives = 325/503 (64%), Gaps = 12/503 (2%) Query: 3 QNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDA 62 + + +L+ L+ GKE+G+LTYAE+NDHLP++ +++ +E II NDMG+ V E+APDA Sbjct: 181 EERRVKLRALIKLGKERGFLTYAEINDHLPDNFTETEALEGIIGTFNDMGVAVYEQAPDA 240 Query: 63 DDLMLAEN----TADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID 118 + L+L +N ++D++ E A LS+V+SE GRTTDPVRMYMREMGTVELLTREGEI+ Sbjct: 241 ETLLLNDNAPAASSDDEVEEEAEVALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIE 300 Query: 119 IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEE------ 172 IAKRIEDG+ + +++ P I +L +RV EE R+ +L+ G +DPNA + Sbjct: 301 IAKRIEDGLRHMVMAISACPTTIADILAMAERVANEEIRVDELVDGLLDPNAADTDTDGF 360 Query: 173 --DLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVV 230 A + + +E+ +++E++D+ + + EKFA + + Sbjct: 361 SAKEAEAIENEDEDAEEEEEEEEEEDDDGAAQATANAAQLEALKRASLEKFALISEWFDK 420 Query: 231 TRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKL 290 R + +G + + R + + L +++R +D VR ER I+ + Sbjct: 421 MRRAFEKEGYKSKAYLKAQETIQSELMTIRFTARTVERLCDTLRAQVDEVRQVERQILHI 480 Query: 291 CVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEE 350 V++C MP+ FI F GNET W A P+S L + Q+L ++ Sbjct: 481 VVDKCGMPRSEFIARFPGNETDLDWAEKIAAEGHPYSAVLSRNIPAIREQQQRLLDLQAR 540 Query: 351 TGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNI 410 L ++ +K+ NR+M+ GE KAR+AK+EM EANLRLVISIAKKYTNRGLQFLDLIQEGNI Sbjct: 541 VVLPLKDLKETNRQMAAGELKARQAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNI 600 Query: 411 GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQM 470 GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK+NRISRQ+ Sbjct: 601 GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQI 660 Query: 471 LQEMGREPTPEELAERMLMPEDK 493 LQE G EP P LAE+M MPE + Sbjct: 661 LQETGLEPDPATLAEKMEMPETR 683 >UniRef50_A8ZUC3 RNA polymerase sigma factor n=10 Tax=Deltaproteobacteria RepID=A8ZUC3_DESOH Length = 738 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 249/613 (40%), Positives = 360/613 (58%), Gaps = 39/613 (6%) Query: 3 QNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDA 62 QN + +L L+ +GK+QG LTY E+ + + + +DQ++D++ ++D+ I V+++A A Sbjct: 161 QNFKQKLSGLIAKGKKQGELTYEEIAKAIEANDIPTDQMDDLLVHLDDLDISVVKKADQA 220 Query: 63 DDLMLAENTADEDAAEAAAQVLSSV--ESEIGRTTDPVRMYMREMGTVELLTREGEIDIA 120 DD + ED A++ + S V +S+ G TD V+MY+REMG V LL+REGE++IA Sbjct: 221 DD-------SGEDGAKSTTRGDSPVTYDSDPGSVTDTVKMYLREMGLVTLLSREGEVEIA 273 Query: 121 KRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATH 180 K+IE G + + + + ++ D ++ R ++ + +A E+ Sbjct: 274 KKIEAGEQEALRGMLDTAVGVESIIAYGDNIDVGNLRPKSVLKDVDEGDAGEEEILRIDA 333 Query: 181 VGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGR 240 + + Q D LR +++ + + Sbjct: 334 FAATIRQIKALD--------------------------ATIQPLRQKHLSVSLSATERKT 367 Query: 241 SHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI-MKLCVEQCKMPK 299 + ++ E+ +RL + D + ++ + T E+ I +L Sbjct: 368 VAEQLTRKTDEIFELLLPWRLESEVLDAMEERIQDEIKWFDTMEQTIDRRLAGLGAGGAV 427 Query: 300 KNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVK 359 + W + K L +E+ ++++ E ++ Sbjct: 428 STIRSKMKTKTGFVNWAYPRMQTTKVH---LAAFYDEIKSLERQMEIRERAIMADRRLLR 484 Query: 360 DINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF 419 +++ G +A+ +K E++ ANLRLV+SIAKKYTNRGLQFLDLIQEGN+GLMKAVDKF Sbjct: 485 KTMKKIDDGYLRAKASKSELIRANLRLVVSIAKKYTNRGLQFLDLIQEGNVGLMKAVDKF 544 Query: 420 EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPT 479 EYRRGYKFSTYATWWIRQAITR+IADQARTIRIPVHMIETINKL R SR ++QE G EP+ Sbjct: 545 EYRRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQERGYEPS 604 Query: 480 PEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTES 539 PEE+AE+M +P +K+R+VLKIA+EPIS+ETPIG++EDSHLGDFIED +P ++A + + Sbjct: 605 PEEIAEKMEIPLEKVRRVLKIAREPISLETPIGEEEDSHLGDFIEDKKFMIPSEAAVSMN 664 Query: 540 LRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLR 599 L T VLA LT RE KVLRMRFGI D+TLEEVG+ F VTRERIRQIEAKALRKLR Sbjct: 665 LSEQTRKVLATLTPREEKVLRMRFGIGEKADHTLEEVGRDFAVTRERIRQIEAKALRKLR 724 Query: 600 HPSRSEVLRSFLD 612 HP+RS++L+ F++ Sbjct: 725 HPTRSKMLKHFIE 737 >UniRef50_B2V7P9 RNA polymerase sigma factor n=20 Tax=Bacteria RepID=B2V7P9_SULSY Length = 590 Score = 447 bits (1151), Expect = e-124, Method: Composition-based stats. Identities = 230/610 (37%), Positives = 357/610 (58%), Gaps = 27/610 (4%) Query: 4 NPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQ-IEDIIQMINDMGIQVMEEAPDA 62 + + ++ L+ +E+GY+TYAE++ ++ E+ SD+ IE +I+ +N++ I V ++ Sbjct: 5 HDRDDVRTLINLAREKGYVTYAEISTYVEEEFFSSDENIESLIEYLNELNIDVRDDE--- 61 Query: 63 DDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKR 122 + DED +E LS + + DPV++Y+REMG + LL R+ EI + Sbjct: 62 -----KIKSEDEDISEHLGIDLSDDDV-WNKADDPVKLYLREMGKIPLLKRDEEIKYSME 115 Query: 123 IEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVG 182 IE G +V + LL+++ +V +AR+ D++ Sbjct: 116 IERGRKKVFRGLLRTSFLTERLLDEWAKVIDGKARVHDILN--------------LDEPE 161 Query: 183 SELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSH 242 + +E + +E E +G+ D D + + +L + +T + + Sbjct: 162 VKDEEETSESEEFSLENNGNYDKITADFIKKGLELAKLYRDLIEKEKKYLETGSLEDKKE 221 Query: 243 ATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNF 302 Q L + D + + ++ + ++R E+ K K+ Sbjct: 222 FVWQHAKLNRFIKSLNIKFTK--LDKIADELKELYTKLRKNEKDYEKRIKIISKIHPDID 279 Query: 303 ITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDIN 362 + L + E + + + + E + ++++I+++ G + + Sbjct: 280 LMLSSDYEKNPEILKKLEEHGFSYG-RYEILRTETLKLKDEIEEIKQKIGTIPSEFDHVL 338 Query: 363 RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR 422 + +G + K+ +V+ANLRLV+SIAKKYTNRGLQFLDLIQEGNIGLMKAVDK++Y+ Sbjct: 339 DLIQLGRNEINNVKQVLVKANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKYDYK 398 Query: 423 RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEE 482 +G+KFSTYATWWIRQAITR+IADQARTIRIPVHMIETINKL RISR ++QE+GREPTPEE Sbjct: 399 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLLRISRTLVQELGREPTPEE 458 Query: 483 LAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRA 542 +A++ MP DK+RK+L+ +++P+S+ETPIG DE+SHLGDFIED T+ P ++LR Sbjct: 459 IAKKAGMPADKVRKILRTSQDPVSLETPIGSDEESHLGDFIEDKTVLSPEQHMLKQALRL 518 Query: 543 ATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 602 +VL+ L+ RE +VLR RFG++ +T++TLE+VGK+F VTRERIRQIEAKALRKLRHP Sbjct: 519 QLDEVLSTLSEREEQVLRYRFGLEDDTEHTLEQVGKRFGVTRERIRQIEAKALRKLRHPH 578 Query: 603 RSEVLRSFLD 612 R++ L+ F++ Sbjct: 579 RAKYLKPFIE 588 >UniRef50_C0R030 RNA polymerase sigma factor n=2 Tax=Brachyspira RepID=C0R030_BRAHW Length = 587 Score = 440 bits (1133), Expect = e-122, Method: Composition-based stats. Identities = 219/611 (35%), Positives = 341/611 (55%), Gaps = 44/611 (7%) Query: 7 SQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLM 66 +++ L+ +G YLT+ E+N + D +D+D ++ + Q++ I ++E+ + + L Sbjct: 15 EKIRKLLEKGNTNKYLTFKEINGAI--DNMDTDVMDILFQLLAARKIVIVEDKREFESLS 72 Query: 67 LAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDG 126 +N D+ A VE ++G DP+R+Y++E+G V LLT + E+D +K+IE G Sbjct: 73 KNQNKIDD------AAKFIHVEDKVGNNDDPIRLYLKEIGKVSLLTHDDEVDYSKKIESG 126 Query: 127 INQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELS 186 ++++ + + +L V+ + + +++ P + S Sbjct: 127 ESEIENIILNTHLVVGEVLNTIKNVQIGKVSIHEIL------------EPPRIYNVSTQE 174 Query: 187 QEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRA--QYVVTRDTIKAKGRSHAT 244 + L+ E++ EK+ L + + T+ TIKA + Sbjct: 175 KRKLERKYKNFEKEY-------------VALAEKYLSLDKRIKKITTQKTIKALTKEQEE 221 Query: 245 AQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCK---MPKKN 301 ++ I+KL + RL + D + ++ + R+ E KL K + Sbjct: 222 VKDSIVKL---LSKVRLNRMEIDRIAEKLKFYLHRINQIEEYFEKLKKRYYKEISDFENY 278 Query: 302 FITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDI 361 + + +GN+ D + N E + V H+A ++ I +E + E + + Sbjct: 279 YKEIESGNK--DIYIRLVDEFNI-TPEAIEAVITSFHKAQVRMADIYDEVRIDKETLVEW 335 Query: 362 NRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY 421 R++ K +AK +V+ANLRLVI+IAKKY NRGL F DL+QEGNIGL+KAVDKFEY Sbjct: 336 VRKIDSSRRKIAQAKDHIVKANLRLVIAIAKKYVNRGLHFFDLVQEGNIGLIKAVDKFEY 395 Query: 422 RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPE 481 ++GYKFSTYATWWIRQAITRSI+DQARTIR+PVHMIE INK+ R+ RQ +Q+ GREP+ + Sbjct: 396 KKGYKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINKVQRVLRQYMQQHGREPSIQ 455 Query: 482 ELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLR 541 E+A+ + PE +++ V +AK+P+S+ PIGD+ED+ LG+ IED E P + T + LR Sbjct: 456 EIAKALSWPESRVKSVRNVAKDPVSLNAPIGDEEDTILGELIEDKEFESPQNITTFKILR 515 Query: 542 AATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHP 601 +L L RE KV+RMRFG+ +TLEEVG F VTRERIRQIEAKA+R+LR Sbjct: 516 KQIDSILDSLPDREQKVIRMRFGLVDGYSHTLEEVGYVFKVTRERIRQIEAKAIRRLRAQ 575 Query: 602 SRSEVLRSFLD 612 S+ + L+ FLD Sbjct: 576 SKKKELKDFLD 586 >UniRef50_Q2GE94 RNA polymerase sigma factor n=2 Tax=Neorickettsia RepID=Q2GE94_NEOSM Length = 620 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 213/627 (33%), Positives = 338/627 (53%), Gaps = 45/627 (7%) Query: 9 LKLLVTRGKEQGYLTYAEVNDHLPE-DIVDSDQIEDIIQMINDMGIQVMEEAPDADDLML 67 +K L+T+G ++G++TY E++D + D + + IE+ I + + GI ++E+ D +D + Sbjct: 13 VKALITKGVKRGFVTYGELSDSFSDEDFENLNCIEEAISKLEESGIGILEK--DEEDELS 70 Query: 68 AENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGI 127 E +++ + AA +L G T DPVR+Y+REM V+LL+R+ E++IAK I Sbjct: 71 EEVKEEDEEEDEAADIL-------GHTDDPVRLYLREMSYVKLLSRDDEVEIAKAIVAEK 123 Query: 128 NQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQ 187 + +V +P + ++ ++ L ++I +E T + Sbjct: 124 FESLSAVLLFPSVLKSIVNLGTKLRECTISLREVIESDSGLKSEL----TEETGKGDDLF 179 Query: 188 EDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRA-QYVVTRDTIKAKGRSHATAQ 246 E +D +E + D++ + I EL + L + + + + Sbjct: 180 EGMDGKPEEGNQMSDEELMEKVLDIFGELETIITSALDKAKEGQMVKIVDGEVILDPEYR 239 Query: 247 EEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLF 306 E Q +L PK + R + + ++++++ +E+ + + I Sbjct: 240 ELHTLAVNHLNQVKLNPKLLAEFFENTRKKNELILEKKKVLLTF-LEEHGLDRTVLIK-- 296 Query: 307 TGNETSDTWFNAAIAMNKPWSE-KLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRM 365 A+ +++ E + D + L ++++E+ G+ + + R++ Sbjct: 297 -----GKVHILDAVVLSELLKEHNICDTHFSLEEFLSPIRELEKNEGMDYRSISFLTRKV 351 Query: 366 SIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGY 425 + A AK MVEANLRLVISIAKKYTNRG+ F DLIQEGNIGLMKAVDKF++RRG+ Sbjct: 352 ATHLDNANAAKHRMVEANLRLVISIAKKYTNRGMPFPDLIQEGNIGLMKAVDKFDHRRGH 411 Query: 426 KFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAE 485 KFSTYATWW RQAITR+IAD +R PVH+ ET NK+ R R++ GREPT EE+A Sbjct: 412 KFSTYATWWCRQAITRAIADCGSIVRKPVHIHETANKVMRTRRRLYNLNGREPTVEEIAN 471 Query: 486 RMLMPEDKIRKVLKIAKEPISMETPIGDDEDS-HLGDFIEDTTLELPLDSATTESLRAAT 544 + + DK++K LK+ ++PIS+E+P+GDD +S GDFIED +D +++LR Sbjct: 472 LLKISPDKVKKSLKVNQDPISLESPVGDDSNSGSFGDFIEDKNAVSQVDVVLSKNLRKVL 531 Query: 545 HDVLAGLTAREAKVLRMRFG--------------------IDMNTDYTLEEVGKQFDVTR 584 + LA L+ RE K+LR RFG ++ T+ TLE+VG ++VTR Sbjct: 532 DEALAMLSPREEKILRYRFGLCNSVHSPEDEHYLKSLKIDLNRGTNLTLEQVGILYNVTR 591 Query: 585 ERIRQIEAKALRKLRHPSRSEVLRSFL 611 ERIRQIE+K+LRK+R PSRS LR+FL Sbjct: 592 ERIRQIESKSLRKMRSPSRSIKLRTFL 618 >UniRef50_C0A975 RNA polymerase sigma factor n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A975_9BACT Length = 631 Score = 424 bits (1089), Expect = e-117, Method: Composition-based stats. Identities = 228/606 (37%), Positives = 336/606 (55%), Gaps = 75/606 (12%) Query: 7 SQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLM 66 +++ L+ KEQGYLT+ ++N+ LPE + + ++I++++ ++ ++ I+++E Sbjct: 39 EKIRNLIRLSKEQGYLTFDDINEALPESVENQEEIDNVLSILQNLEIEILE--------- 89 Query: 67 LAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDG 126 + D + + S S DPVRMY+++MG V LLTRE E++I+KRIE Sbjct: 90 -PDQVEDYKQRQEEQEEEESRTSNNDILDDPVRMYLKQMGQVPLLTREQEVEISKRIETA 148 Query: 127 INQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELS 186 ++ Q ++ E ++ ++ E R ++ + E V + Sbjct: 149 ESKAQEALFEASIVGRHIATLGAKLLTREERFDRIVIDKRIESRESYFKALPKLVETTQK 208 Query: 187 QEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQ 246 E+ D E+ + R+ K + Sbjct: 209 NEESVSDSWEE------------------------------FQKARNEADRKKILSKHKK 238 Query: 247 EEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLF 306 E L F +F K ++ + + R ++ + ++ +++ K PK Sbjct: 239 RETT-LRSNFSKFFFKLKVYEEWLETNRPVLSEI-----ELLHAQLDRAKTPKTK----- 287 Query: 307 TGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMS 366 D + + +L++IE E + Q+ ++ R+ + Sbjct: 288 ------------------------KDAAIDTKAIHARLREIEVEQRIEPAQLIEVVRKTN 323 Query: 367 IGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYK 426 + +A +AK EMVEANLRLVISIAKKYTNRGL FLDLIQEGN+GLMKAV+KFEYRRGYK Sbjct: 324 VHIREAHQAKTEMVEANLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYK 383 Query: 427 FSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAER 486 FSTYATWWIRQAITRSIADQARTIRIPVHMIET+NK+ ++ +Q+LQE G EPTPEE+A+ Sbjct: 384 FSTYATWWIRQAITRSIADQARTIRIPVHMIETLNKVMQVQKQLLQEFGHEPTPEEVADE 443 Query: 487 MLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHD 546 M +P +++++++K+A++PIS+++P+GD +D+ GDFIED + E P D LR D Sbjct: 444 MNLPVERVQQIMKMAQQPISLQSPVGDGDDTSFGDFIEDKSAENPYDMTAYSLLREKIID 503 Query: 547 VLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEV 606 VL LT RE KVL +RFG+ TLEEVGKQF VTRERIRQIEAKALRK+RHP+R Sbjct: 504 VLDSLTERERKVLSLRFGLVDGYSRTLEEVGKQFKVTRERIRQIEAKALRKMRHPTRIRQ 563 Query: 607 LRSFLD 612 L F D Sbjct: 564 LHGFFD 569 >UniRef50_B2UM02 RNA polymerase sigma factor n=7 Tax=Verrucomicrobia RepID=B2UM02_AKKM8 Length = 688 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 234/612 (38%), Positives = 335/612 (54%), Gaps = 86/612 (14%) Query: 4 NPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDAD 63 Q +++ L+ KEQGYLT+ ++ND LP DIVD E I+ + M +++ + Sbjct: 156 EIQEKIRELIKLAKEQGYLTFDDINDSLPNDIVDQQDYEAIMDRLRSMAFDIIDASDVDS 215 Query: 64 DLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRI 123 T + +E+++ DPVRMY+++MG V LLTRE E+ I+KRI Sbjct: 216 Y------TDRTRISTEEEDEEEKLEAKMDILDDPVRMYLKQMGQVSLLTREEEVAISKRI 269 Query: 124 EDGINQVQCSVAEYPEAITYLLE-QYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVG 182 ED VQ V + L+ Y ++ EE ++ +D Sbjct: 270 EDAEQNVQRCVHRFGFIANAYLDVAYRLLDNEERFDRVILDKKID--------------- 314 Query: 183 SELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSH 242 +RE++ I+ + Sbjct: 315 ----------------------------------SRERY---MKGLAQLCAQIQQTHQDA 337 Query: 243 ATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLC--VEQCKMPKK 300 + + ++ + E K + +FD + ++ R+ + ++I C +++ + Sbjct: 338 SGSFRKLYRSKEAAKSVKARQAEFDKVAGALVKFFGRLYFKHKVIEDFCSMIDEAR---- 393 Query: 301 NFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKD 360 + + M K + + + + L ++E +T +++ D Sbjct: 394 ----------------DRVLRMQKKVA-----LEPDNKELKEHLAELELRMWMTADEMGD 432 Query: 361 INRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE 420 + + +ARRAK EMVEANLRLVISIAKKYTNRGL FLDLIQEGN+GLMKAV+KFE Sbjct: 433 AYQELRKWLREARRAKDEMVEANLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFE 492 Query: 421 YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTP 480 YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKL R+ +Q++QE GREPTP Sbjct: 493 YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLMRVQKQLVQEYGREPTP 552 Query: 481 EELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESL 540 EE+AE + +P +++R VLK+A++PIS++ P+GD +D+ GDFIED E P++ A+ L Sbjct: 553 EEIAEEIHLPVERVRSVLKMAQQPISLQAPVGDSDDTSFGDFIEDKAAENPMEEASFSFL 612 Query: 541 RAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 600 + DVL LT RE +V+ RFG+ + TLEEVG+QF VTRERIRQIEAKALRKLRH Sbjct: 613 KEKIKDVLDTLTDREREVIEQRFGLRDGSPRTLEEVGRQFSVTRERIRQIEAKALRKLRH 672 Query: 601 PSRSEVLRSFLD 612 P+R ++ FL+ Sbjct: 673 PTRISKIKGFLE 684 >UniRef50_Q9Z7F0 RNA polymerase sigma factor rpoD n=15 Tax=Chlamydiales RepID=RPOD_CHLPN Length = 572 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 228/611 (37%), Positives = 335/611 (54%), Gaps = 72/611 (11%) Query: 2 EQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPD 61 E+ Q +L+ LV KEQG++TY E+N+ LP +QI+ ++ + M IQV+ + Sbjct: 16 EEESQKKLEELVALAKEQGFITYEEINEILPMSFDTPEQIDQVLIFLTGMDIQVLNQ--- 72 Query: 62 ADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAK 121 + ++ + A ++ G DPVRMY++EMGTV LLTRE E++I+K Sbjct: 73 ------IDVERQKEKKKEAKELEGLARRTEGTPDDPVRMYLKEMGTVPLLTREEEVEISK 126 Query: 122 RIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHV 181 RI + +V+ E L +A+E ++ + Sbjct: 127 RI-----------------------EKAQVQIERIILR------FRYSAKEAISIAHYLI 157 Query: 182 GSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRS 241 + + + +++ +++ F +L + + Sbjct: 158 SGKERFDKIISEKEVEDKT-------------------HFLKLLPKLITLLK-------- 190 Query: 242 HATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKN 301 EE L + + P + +++ R + + ++ + + ++ Sbjct: 191 -----EEDTYLENLLLSLK-QPDLSKQEAAKLNDSLEKCRIRTQAYLRCFHCRHNVT-ED 243 Query: 302 FITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDI 361 F + S I K +E+ + ++ A +KL + E G T+E+ K Sbjct: 244 FGEVVFKAYDSFLHLEQQINDLKVRAERNKFAAAKLAAAKRKLYKREVAAGRTLEEFKKD 303 Query: 362 NRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY 421 R + K++ AKKEMVE+NLRLVISIAKKYTNRGL FLDLIQEGN+GLMKAV+KFEY Sbjct: 304 VRMLQRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEY 363 Query: 422 RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPE 481 RRGYKFSTYATWWIRQA+TR+IADQARTIRIPVHMIETINK+ R +++++ E G+EPTPE Sbjct: 364 RRGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTPE 423 Query: 482 ELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLR 541 ELAE + + D++R++ KIA+ PIS++ +G+ +S GDF+EDT +E P ++ L+ Sbjct: 424 ELAEELGLTPDRVREIYKIAQHPISLQAEVGEGSESSFGDFLEDTAVESPAEATGYSMLK 483 Query: 542 AATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHP 601 +VL LT RE VL RFG+ TLEEVG F+VTRERIRQIEAKALRK+RHP Sbjct: 484 DKMKEVLKTLTDRERFVLIHRFGLLDGKPKTLEEVGSAFNVTRERIRQIEAKALRKMRHP 543 Query: 602 SRSEVLRSFLD 612 RS+ LR+FLD Sbjct: 544 IRSKQLRAFLD 554 >UniRef50_O83506 RNA polymerase sigma factor rpoD n=11 Tax=Bacteria RepID=RPOD_TREPA Length = 611 Score = 403 bits (1036), Expect = e-111, Method: Composition-based stats. Identities = 232/651 (35%), Positives = 355/651 (54%), Gaps = 81/651 (12%) Query: 1 MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQI-EDIIQMINDMGIQVME-- 57 ME + + L+ +E+ +T+ EV + L V+++++ D++ M+ I+V Sbjct: 2 MELSRTPAVMRLLEYAREKKAITHDEVENILAHYGVETEELLHDVLDMLEQENIKVFSSE 61 Query: 58 -----------------EAPDADDLMLAENTADE--DAAEAAAQVLSSVESEIGRTTDPV 98 + D + E D+ D++ A Q L S I DPV Sbjct: 62 EEELEDEVFAGLKGPAADDGDGSFPLSTERVRDKLCDSSRGARQNLLSNARNIA-LDDPV 120 Query: 99 RMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARL 158 ++Y+R++G +LLT E E+ ++KR+E+G E + Sbjct: 121 KLYLRDIGQEKLLTAEQEVMLSKRMEEG----------------------------EGII 152 Query: 159 SDLITGFVDPNAEEDLAPTATHVGSELSQEDL---DDDEDEDEEDGDDDSADDDNSID-- 213 D+IT L P H+G LS++ L D E + D + Sbjct: 153 KDIIT------QSGLLLPEFYHIGRSLSKKALAVLDPAESGRTRKEISEEMADRRRLKQA 206 Query: 214 -PELAREKFAELRAQYVVTRDTIKAKGR--SHATAQEEILK--------LSEVFKQFRLV 262 E+ R + E+R Y+ + + +G + ++ EE+ K L +V Q + Sbjct: 207 YGEVLRSLYPEMR-HYMAMKKRLDERGEPVTVLSSDEEVCKQRDKLLSCLQKVDLQLEEI 265 Query: 263 PKQFDYLVNSMRVMMDRVRTQERLIMKLCV-EQCKMPKKNFITLFTGNETSDTWFNAAIA 321 + +++ R + + R ++R +L + + C M K I + Sbjct: 266 DRFSRKFLDTARKIREYKRRKDRHEKQLMIADLCDMRK---IGRGLAVPRQRAKLEETLG 322 Query: 322 MNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVE 381 M+ ++ + ++ ++ + ++L++IE + TI+ + + R + G ++AK +++ Sbjct: 323 MS---ADCIQEIYTQIQKVTRRLRRIEYDFENTIDGILSMARAIHRGHVMLKKAKDKLIN 379 Query: 382 ANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITR 441 ANLRLV+SIAKKYTNRGL F DL+QEGNIGL+KAV+KFEYR+GYKFSTYATWWIRQAITR Sbjct: 380 ANLRLVVSIAKKYTNRGLLFFDLVQEGNIGLIKAVEKFEYRKGYKFSTYATWWIRQAITR 439 Query: 442 SIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIA 501 SI+DQARTIR+PVHMIE INK+ R SRQ+LQ+ GREP+ EE+A+++ +K+++V +A Sbjct: 440 SISDQARTIRVPVHMIEQINKVTRESRQLLQKFGREPSDEEIAQQLCWTVEKVKQVKSVA 499 Query: 502 KEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRM 561 +EPIS+ETPIG++EDS LGDF+ D +E P L+ +L+ L ARE +VLRM Sbjct: 500 REPISLETPIGEEEDSSLGDFVPDADVENPSRVTERVLLKEEVRSILSALPAREHEVLRM 559 Query: 562 RFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 RFG+D + TLEEVG FDVTRERIRQIEAKAL++LRHP S L+ FLD Sbjct: 560 RFGLDGDYSQTLEEVGLYFDVTRERIRQIEAKALKRLRHPRHSRRLKDFLD 610 >UniRef50_B2KBW8 RNA polymerase sigma factor n=2 Tax=Elusimicrobia RepID=B2KBW8_ELUMP Length = 571 Score = 400 bits (1029), Expect = e-110, Method: Composition-based stats. Identities = 195/607 (32%), Positives = 314/607 (51%), Gaps = 42/607 (6%) Query: 7 SQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLM 66 K LV GKE G+LT E+N L + ++ I+ ++ + D+GIQV++ + Sbjct: 7 KAFKDLVEVGKENGFLTLDEINRSLTSSSMSAEDIDGLMGTLEDLGIQVVDRKK-YKSVA 65 Query: 67 LAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDG 126 +AE A + A ++ +RMY+ EMG V LL+R+ EI +A+ + + Sbjct: 66 MAEKEAYTEEFMANPD-----------ISNSIRMYLSEMGKVPLLSRDEEITLARNVRER 114 Query: 127 INQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELS 186 +++ V E P + + + V+ EE +L+ Sbjct: 115 EKELRKLVLESPITMREICNWEELVDQEEMTTKELM------------------------ 150 Query: 187 QEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQ 246 + + A E +LR ++ + + Q Sbjct: 151 PRGKRTTRELNNMRKKLKEAAKFIGKREGEITELMKKLREP-SISDKMLNKYTEALEKKQ 209 Query: 247 EEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLF 306 +E++ + + L + L N ++ + R+ + + ++ LF Sbjct: 210 KEVV---DSIIKLNLNQNKIKRLTNRIKSLAQRIAESRNDLNRF--DEYFGQYAEVKKLF 264 Query: 307 TGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMS 366 T + E+L + + +++ ++ ++ N R+ Sbjct: 265 TQASKGKISKAELKKKTRFTYEELETAINNIDMIRSRHEKLINTLPMSEKEFLAFNDRIV 324 Query: 367 IGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYK 426 E + K ++++ANLRLV+SIAKK+ N L+ DLIQEG +GLMKAV+KFEY+RG+K Sbjct: 325 FFEDMILQDKLKLIKANLRLVVSIAKKHVNSNLELSDLIQEGGLGLMKAVEKFEYKRGFK 384 Query: 427 FSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAER 486 FSTYATWWIRQ+I R+IADQA TIRIPVHM E ++KL +++ + QE GREP+ E+ ++ Sbjct: 385 FSTYATWWIRQSINRAIADQANTIRIPVHMKELVSKLTKVTNKFRQEHGREPSLEDYSKS 444 Query: 487 MLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHD 546 + + +K++ VLKI ++PIS+ TP+G+DEDS+L DFIED P +A+ + + Sbjct: 445 LRLSMEKVKGVLKIMQDPISLSTPVGEDEDSNLEDFIEDKAGANPTVTASDFLRKQEVSE 504 Query: 547 VLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEV 606 VL L+ REAK++R+RFGID TLEEVGK F+VTRER+RQIEAKA+RKLRHPSR+++ Sbjct: 505 VLNTLSEREAKIIRLRFGIDSGYPRTLEEVGKMFNVTRERVRQIEAKAIRKLRHPSRTKM 564 Query: 607 LRSFLDD 613 L+ + D+ Sbjct: 565 LKDYSDE 571 >UniRef50_C8R064 RNA polymerase sigma factor n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R064_9DELT Length = 555 Score = 377 bits (969), Expect = e-103, Method: Composition-based stats. Identities = 199/518 (38%), Positives = 285/518 (55%), Gaps = 71/518 (13%) Query: 96 DPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEE 155 DPV++Y++EMG V LL+ E E+ +AK IE G +Q ++ P A+ YL E +++ Sbjct: 108 DPVKVYLQEMGAVALLSSEEEVAVAKEIERGERTIQDALVIAPPALAYLDEIAKKIQHGN 167 Query: 156 ARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPE 215 LSD++ G ++LD + E+++ ++ + E Sbjct: 168 RMLSDIVRGL----------------------DELDKETHEEKQKNFLWRIEEALRLARE 205 Query: 216 LAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRV 275 + +L + + R + + +F R K +V +R Sbjct: 206 TTALRRDQL---NAAGSNEGAQERRQQSRIDRNRKAQAALFADDRFSAKHLQAMVRLLRE 262 Query: 276 MMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSE 335 + ++ I G + D Sbjct: 263 LESKL----------------------IGPKPGGQDQDA--------------------- 279 Query: 336 EVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYT 395 + E+ GL +++ + ++S+GE +R AK +V++NLRLV+S+AKKY Sbjct: 280 ---ALQEWHFTCLEQYGLDRQELSALLAQISLGEEISREAKNRLVQSNLRLVVSVAKKYA 336 Query: 396 NRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVH 455 RGLQ LDL+QEGNIGLMKAV+KFEYRRGYKFSTYATWWIRQA+TR+IADQ RTIRIPVH Sbjct: 337 GRGLQLLDLVQEGNIGLMKAVEKFEYRRGYKFSTYATWWIRQAVTRAIADQGRTIRIPVH 396 Query: 456 MIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDE 515 MI+TIN++ + +++ ++ GREPTPEE+AE + + K++ +LKIAKEP+S++TP+G E Sbjct: 397 MIDTINRMLKGAKEYQRQHGREPTPEEMAEHLGVDIAKVKSILKIAKEPLSLDTPVGSGE 456 Query: 516 DSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEE 575 DS L DFIED P ++ +SL+ VL LT RE VLR+RFGID TD TLEE Sbjct: 457 DSFLSDFIEDADSTSPDEATIYDSLQDNLARVLKTLTPREEMVLRLRFGIDTATDLTLEE 516 Query: 576 VGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 VG+ F VTRERIRQIEAKAL+KL+HP+R +L F DD Sbjct: 517 VGENFSVTRERIRQIEAKALKKLKHPTRKSILSPFYDD 554 >UniRef50_A6G972 RNA polymerase sigma factor n=2 Tax=Bacteria RepID=A6G972_9DELT Length = 547 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 228/551 (41%), Positives = 305/551 (55%), Gaps = 46/551 (8%) Query: 105 MGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITG 164 MGT+ LLTREGEI++AKRIE G N+V V P AI Y+ + DRVE R+ D Sbjct: 1 MGTISLLTREGEIEVAKRIEAGENKVIDIVLRSPIAIPYVFDLCDRVERSLVRVKD---A 57 Query: 165 FVDPNAEEDLAPTA--------------------------------------THVGSELS 186 FV P ++ P + S Sbjct: 58 FVIPAKNDEKRPGEADGPTGQEAAVENMKVQLKRLRKQHRELEKIEERVAELDAQATAAS 117 Query: 187 QEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQ 246 + + E + D+ + S A A V + A Sbjct: 118 EAERPAAEPVALVVDNGDAPSEAASAGAAPAAAYAAPSTPPAEVALVEGGKDDGARAELD 177 Query: 247 EEILKLSE----VFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNF 302 ++ +L E FRL K + + + ++ VR R ++ C + + Sbjct: 178 KKHHELREATVGTMLDFRLSRKSIEEMSEELSETVETVRRALRELLD-CERRAGVDLDEL 236 Query: 303 ITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDIN 362 + F G + +LH++ + A ++++Q+E+ETG++ + + + Sbjct: 237 RSTFEGVRLREQEEFKLCRRLGLHPWELHELITRMKVATKRIRQVEQETGVSADNLVALY 296 Query: 363 RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR 422 ++ + AK E+VEANLRLV+SIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY+ Sbjct: 297 DSLTKARREREAAKAELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQ 356 Query: 423 RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEE 482 RGYKFSTYATWWIRQAITR+I+DQARTIR+PVHMIE+INKL R +RQ++QE GREPT +E Sbjct: 357 RGYKFSTYATWWIRQAITRAISDQARTIRVPVHMIESINKLIRTTRQLVQEFGREPTHQE 416 Query: 483 LAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRA 542 +AE+M MP +K+R +L+IAKEPIS+ETP+G+D DS LGD IED P L Sbjct: 417 IAEKMNMPVEKVRSILRIAKEPISLETPLGEDGDSSLGDLIEDKNALDPGSGVVERHLGD 476 Query: 543 ATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 602 T LA LT RE K+LR+RFGI +D+TLEEVG+ F VTRERIRQIEAKAL KLR Sbjct: 477 ETRRALASLTPREEKILRLRFGIGEASDHTLEEVGRDFSVTRERIRQIEAKALSKLRKAD 536 Query: 603 RSEVLRSFLDD 613 R++ LR F++D Sbjct: 537 RAKQLREFVED 547 >UniRef50_A6CE36 RNA polymerase sigma factor n=6 Tax=Planctomycetales RepID=A6CE36_9PLAN Length = 588 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 201/617 (32%), Positives = 311/617 (50%), Gaps = 76/617 (12%) Query: 7 SQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEA---PDAD 63 + L LL ++QG+LT+ +V+ LP++ D IE I+ + + G+ ++++ D + Sbjct: 6 ANLNLLFQEAEKQGFLTFQQVHTFLPDEGGDPSLIEYIVVGLEERGLDLIDDPNADIDDE 65 Query: 64 DLMLAENTADEDAAEAAAQVLSS--------VESEIGRTTDPVRMYMREMGTVELLTREG 115 ++ +++A+ + A S + DP+RMY+ +MG + LL+R Sbjct: 66 EVASVDSSANTHSDVAQGADEDSDDASSSIVEPETSLSSRDPIRMYLSQMGNIPLLSRSR 125 Query: 116 EIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLA 175 EI +AK+IE + + +V E A+ ++ ++V A E + +A +D Sbjct: 126 EIFLAKKIEITRKRFRRTVLESDFALKIAIDTLEKVFAGELPFERTLRTSDTEDATKDQI 185 Query: 176 PTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTI 235 + L + ++ E + + E++ + VV R Sbjct: 186 MGRMPYNIATLKALLQKNNEDFELIQSGELGKVEQ-----------REVQKRMVVRR--- 231 Query: 236 KAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQC 295 K++ + ++ L ++ ++ + + R+R + + Sbjct: 232 --------------QKMATLCEELCLRTQRLQPVLKRIHQIAGRMREVQEQLEDY----- 272 Query: 296 KMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTI 355 K T + + + M SE S E+ R Sbjct: 273 ----KQLRHKATDHRLLERELSELTIMVVETSEDFQTRSREIKRRFD------------- 315 Query: 356 EQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKA 415 AK+++ NLRLV+SIAKKY NRGL FLDLIQEGN GLM+ Sbjct: 316 ---------------DWTEAKQQLSGGNLRLVVSIAKKYRNRGLSFLDLIQEGNAGLMRG 360 Query: 416 VDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMG 475 V+K+EYRRGYKFSTYATWWIRQAITR++AD ARTIRIPVHM ++I+ L S Q+ QE G Sbjct: 361 VEKYEYRRGYKFSTYATWWIRQAITRAVADHARTIRIPVHMFQSISTLKARSEQIRQETG 420 Query: 476 REPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSA 535 REPT EELA+ + + ++ +++K K PIS++TP+G+ EDS GDF+ED P D+A Sbjct: 421 REPTMEELADSVGLGVEETERIMKTWKHPISLDTPVGESEDSSFGDFLEDGHESSPADAA 480 Query: 536 TTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKAL 595 E L+ VL LT RE +++R+R+G+ YTLEE G+ F VTRERIRQIE+KAL Sbjct: 481 MREMLKDKIEHVLKSLTYREREIIRLRYGLGDGYSYTLEETGRIFKVTRERIRQIESKAL 540 Query: 596 RKLRHPSRSEVLRSFLD 612 RKL+H +RS LR F+D Sbjct: 541 RKLQHQTRSAHLRGFVD 557 >UniRef50_Q02AX1 RNA polymerase sigma factor n=2 Tax=Acidobacteria RepID=Q02AX1_SOLUE Length = 518 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 201/560 (35%), Positives = 310/560 (55%), Gaps = 62/560 (11%) Query: 54 QVMEEAPDADDLMLAENTA--DEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELL 111 Q + E P+A L ++ D +AA A + + E T DPVR+Y+REMG V LL Sbjct: 16 QFLAENPEALGLSFEDDPKFFDPEAAHEADFLHPAPVEESIYTDDPVRVYLREMGAVPLL 75 Query: 112 TREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAE 171 TREGE+D+A+R+E G ++Q +++ +++ D+++ + ++ Sbjct: 76 TREGEVDLARRMERGKLRMQKAISRSALVQRVVVDVADQLKRANIEIESVV--------- 126 Query: 172 EDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVT 231 + GD + + A + FA++ + Sbjct: 127 ---------------------------DLGDVEEGSPADVKVRNEAAKHFADIVVLHKKL 159 Query: 232 RDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLC 291 + + +++ +L +L + + + R ++ +E Sbjct: 160 QQLEDKVEATPLASKKPRKRLCA-----KLNRSKVETSLAIRRAPFRLIKWKE------- 207 Query: 292 VEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEET 351 F + ++ I + S + + +++++ E Sbjct: 208 ----------FAREIERAVDEISHLDSEIKRLEVRSNPTQQLR--LRELKREIKKREIAA 255 Query: 352 GLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIG 411 G T+ ++K + GEA+A RAKK++VEANLRLV+S+AKKY NRGL LDLIQEGNIG Sbjct: 256 GATLPELKHSLTVIRHGEAEAERAKKDLVEANLRLVVSVAKKYVNRGLHLLDLIQEGNIG 315 Query: 412 LMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQML 471 LM+A DKFEYRRGYKFSTYATWWIRQAITR+IADQ+RTIRIPVHM E++NK R +R++ Sbjct: 316 LMRAADKFEYRRGYKFSTYATWWIRQAITRAIADQSRTIRIPVHMNESMNKFLRATRELE 375 Query: 472 QEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELP 531 +E+GR PT +E+ RM +P +K++K+ I+++P+S+ETP+G D +S LGD IED + P Sbjct: 376 KELGRTPTNDEIGRRMDIPVEKVQKLKTISRDPVSLETPVGRDGESALGDLIEDRWVGSP 435 Query: 532 LDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIE 591 +D+ ++R T +L L+ +E KV+RMRFGI ++TLEE+G++FDVTRERIRQIE Sbjct: 436 VDAVIESNVRDETAGILKTLSPKEEKVIRMRFGIGCEREHTLEEIGQEFDVTRERIRQIE 495 Query: 592 AKALRKLRHPSRSEVLRSFL 611 AKALR+LR P R+ LR+ + Sbjct: 496 AKALRQLRAPERARRLRALM 515 >UniRef50_Q9ZMY3 RNA polymerase sigma factor rpoD n=59 Tax=Epsilonproteobacteria RepID=RPOD_HELPJ Length = 681 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 193/561 (34%), Positives = 305/561 (54%), Gaps = 14/561 (2%) Query: 56 MEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREG 115 + + + DE+ + + E R+ PVRMY+REMG ++LL+++ Sbjct: 128 LNAIDKIKNTEEKQKVLDEELEDGYDFLKEKDFLEWSRSDSPVRMYLREMGDIKLLSKDE 187 Query: 116 EIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLA 175 EI+++K+I G + + ++ P I ++ D + E R+ +L F D + Sbjct: 188 EIELSKQIRLGEDIILDAICSVPYLIDFIYAYKDALINRERRVKELFRSFDDDDENSVSD 247 Query: 176 PTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTI 235 P E + + +++ + + + +E L A D + Sbjct: 248 PKKDDDSEEDEENEERKKVVSEKDKKRVEKVQESFKALDKAKKEWLKALEAPIDEKEDEL 307 Query: 236 KAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQC 295 T + L + K + LV +M + E+ + +L + Sbjct: 308 VR----SLTLAYKRQTLKDRLYDLEPTSKLINELVKTMETTLKSGDGFEKELKRL---EY 360 Query: 296 KMPKKNFITLFTGNET----SDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEET 351 K+P F N + T + + + V ++ + + EE Sbjct: 361 KLP--LFNDTLIANHKKILANITNMTKEDIIAQVPEATMVSVYMDLKKLFLTKEASEEGF 418 Query: 352 GLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIG 411 L ++K+I ++ G+ + RAK +M ++NLRLV+SIAK++T+RGL FLDLIQEGNIG Sbjct: 419 DLAPNKLKEILEQIKRGKLISDRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIG 478 Query: 412 LMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQML 471 LMKAVDKFE+ +G+KFSTYATWWI+QAI+R+IADQARTIRIP+HMI+TIN++N++ R+ + Sbjct: 479 LMKAVDKFEHEKGFKFSTYATWWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHI 538 Query: 472 QEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELP 531 QE G+EP E +AE + + DK++ V+K+ KEPIS+ETP+G+D+D GDF+ED + Sbjct: 539 QETGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSS 598 Query: 532 LDSATTESLRAATHDVLAGLTAREAKVLRMRFG-IDMNTDYTLEEVGKQFDVTRERIRQI 590 +D E L+A VL L RE V+RMRFG +D +D TLEE+GK+ +VTRER+RQI Sbjct: 599 IDHIMREDLKAQIESVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQI 658 Query: 591 EAKALRKLRHPSRSEVLRSFL 611 E+ A++KLR P +LR++L Sbjct: 659 ESSAIKKLRSPQYGRILRNYL 679 >UniRef50_Q6AQ51 RNA polymerase sigma factor n=1 Tax=Desulfotalea psychrophila RepID=Q6AQ51_DESPS Length = 534 Score = 371 bits (952), Expect = e-101, Method: Composition-based stats. Identities = 202/559 (36%), Positives = 305/559 (54%), Gaps = 64/559 (11%) Query: 58 EAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTT---DPVRMYMREMGTVELLTRE 114 +P + ++A + ++ A + +SS + + G +T D + +YMREMG+++LL + Sbjct: 37 SSPVLGEPLVAGSDLLKEGVRAPKRRISSSQRKQGDSTAAADSMNIYMREMGSLKLLKYD 96 Query: 115 GEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDL 174 E +A+ IE G QVQ +V + A+ LL+ + + ++S + G P+A+ D+ Sbjct: 97 DERKLAQTIEKGKKQVQFAVLQSTLAMPILLQMKETIVENPGKISLFVGGI--PDAQFDV 154 Query: 175 APTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDT 234 A V Q + D + Sbjct: 155 IAEACDVFLANWQTCVGLD-----------------------------------GQRKKY 179 Query: 235 IKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQ 294 +K +A L + + + + + F+ DRV + E + + + Sbjct: 180 LKKYLSPSLSADAREKLLFNILQCGKQIAELFE----------DRVLSSE--YVNMVAQA 227 Query: 295 CKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLT 354 + K F +F IA E+ EE+ R + Q E+G + Sbjct: 228 AEDLSKRFRKIFV----------ELIAGEGDLPEEEMRSPEELERLVD--LQFIRESGSS 275 Query: 355 IEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK 414 ++ + ++ + + G ++ AK+ +V ANLRLVIS++K++ NRGLQF DLIQEGNIGLMK Sbjct: 276 LQSLNELLKEVEEGRFISKEAKEALVRANLRLVISVSKRFVNRGLQFSDLIQEGNIGLMK 335 Query: 415 AVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEM 474 AV+KF+YRRG+KFSTYATWWIRQ+ITR IADQ RTIR+PVHMIETIN++ R+S+ E Sbjct: 336 AVEKFDYRRGFKFSTYATWWIRQSITRGIADQGRTIRLPVHMIETINRMLRVSKDFYLEE 395 Query: 475 GREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDS 534 REP+ EE+A ++ DK++ LKIAK+ IS++TP+GDD +++LGDFI D P Sbjct: 396 HREPSVEEVAGQLGTEVDKVKSALKIAKDAISLDTPVGDDGETYLGDFIVDKNCLGPDGF 455 Query: 535 ATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKA 594 A SL+ VL+ L+ RE KVL+MR+GI +YTLEEVG+ F+VTRERIRQIEA+A Sbjct: 456 AMVASLKECLSQVLSSLSPREEKVLKMRYGILEKREYTLEEVGRCFNVTRERIRQIEAQA 515 Query: 595 LRKLRHPSRSEVLRSFLDD 613 + KL+HPSR L+ F+ D Sbjct: 516 ISKLKHPSRCGDLKVFMTD 534 >UniRef50_P52323 RNA polymerase sigma factor rpoD n=32 Tax=Borrelia RepID=RPOD_BORBU Length = 631 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 188/653 (28%), Positives = 342/653 (52%), Gaps = 67/653 (10%) Query: 1 MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP 60 +E+ ++ ++T ++ L+++E+++ LP+DI++ + ++ I ++ D GI+++ + Sbjct: 4 LEKKYSKLIEGIITHLGDRKSLSFSELSNLLPDDILEPEILDCICSVLEDRGIRLVNKIS 63 Query: 61 DADDLMLAENT----------------------ADEDAAEAAAQVLSSVESEIG------ 92 + D ++ + +DE+ + ++ E +I Sbjct: 64 ELDLVVSEDGNDEEEEVEIESDRNFMILDDGFQSDEEDIDIDVKLDDCDEEDISVKDDLG 123 Query: 93 ------------RTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEA 140 + DP+++Y++E+G LLT E+++AK+++ G + ++ + Sbjct: 124 SGYIKGNVLKDSHSEDPIKLYLKEIGKEFLLTGNQEVELAKQMDSGESIIENILKNEGLV 183 Query: 141 ITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEED 200 I + + + R E ++ + +++ Sbjct: 184 IENYYNLVNTIYSRMER--------------------EEFFKREKDKDKESSPDYYNKKK 223 Query: 201 GDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFR 260 + Y + D + + +E L L E+ + Sbjct: 224 RIASFYKIPLKPIQDRLISYVDNKHRVYDLGGDIFEKNLK------KERLALKELLRDIP 277 Query: 261 LVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAI 320 L ++ + ++++ +R ++ + + K+ K + + + T Sbjct: 278 LYQEELRIFSDDYIDSANKIKDLQRQ-QRIILSRLKIEKIRDLRVLGRDLTIAEKKIEIE 336 Query: 321 AMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMV 380 K + + + E A ++L++IE +++ ++ ++ G+ + AK +++ Sbjct: 337 KSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPTDKIISMSEEIAKGKQMMQHAKDQLI 396 Query: 381 EANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAIT 440 +ANLRLV+SIAKKY NRGL F DL+QEGNIGL+KAV+KFEY+RG+KFSTYATWWIRQAIT Sbjct: 397 KANLRLVVSIAKKYANRGLHFFDLVQEGNIGLIKAVEKFEYKRGFKFSTYATWWIRQAIT 456 Query: 441 RSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKI 500 RSI+DQARTIR+PVHMIE IN+LNR +R ++Q +G++PT EEL++R+ K++ V + Sbjct: 457 RSISDQARTIRVPVHMIEQINRLNRETRYLIQVLGKDPTDEELSDRLGWELKKVKTVKSV 516 Query: 501 AKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLR 560 ++EP+S+ETPIG++EDS L DFIED ++ P + + L+ +L L RE +V++ Sbjct: 517 SREPVSLETPIGEEEDSVLSDFIEDKAIKNPANHTSFVVLQDQIRAILGTLPEREQEVVK 576 Query: 561 MRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 MRFG++ TLEEVG F+VTRERIRQIE+KALR+L++P +++ L+ +L+D Sbjct: 577 MRFGLEDGYSLTLEEVGLHFNVTRERIRQIESKALRRLKNPKKTQKLKDYLED 629 >UniRef50_A1S281 RNA polymerase sigma factor n=7 Tax=Bacteria RepID=A1S281_SHEAM Length = 969 Score = 355 bits (912), Expect = 2e-96, Method: Composition-based stats. Identities = 177/577 (30%), Positives = 293/577 (50%), Gaps = 41/577 (7%) Query: 38 SDQIEDIIQMINDMGIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDP 97 ++++ I Q++ G + + + + L A++ ++ A + + ++ + +P Sbjct: 424 AEKVFYIRQVLEVHGCVIDDHTFEGESL--ADSVYEDHDAASIDDAMLLLDDLLYARDEP 481 Query: 98 VRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYP---EAITYLLEQYDRVEAE 154 + Y + ELLTRE E+D R E + +++E P E + +L ++ R Sbjct: 482 MGYYFASLPGKELLTREQEVDNGMRREAARLAIMEALSEVPFICELLAHLCQEALREHNP 541 Query: 155 EARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDP 214 E L ++ AE + P+ V + + D+++ D + D+ +D Sbjct: 542 EQSLQKVV-------AELNTLPSEDFVEIKRAVSLFMDEQE--------DGDEPDDFVDT 586 Query: 215 ELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMR 274 L+ V+ ++ H Q+ F+ L + L+ ++ Sbjct: 587 YPYEAIVGALKTFLNVSGES------EHPGVQD-------TFRSIVLTEDALNILIKALY 633 Query: 275 VMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVS 334 +D+V + ++ L + K+P+K + + +KL + Sbjct: 634 ESIDKVSDIKTELVNLYTREIKLPRKTA-ESVAEQKMGRELISQLKTEYPLCEDKLERHA 692 Query: 335 EEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKY 394 ++R ++Q I ++TG+ + ++DI ++ + A+ EM+ NLRLV+S+A KY Sbjct: 693 GAINRLQAQMQNINQKTGIDLYSLQDIGSKIKKLQRDISAARDEMITFNLRLVLSVANKY 752 Query: 395 TNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPV 454 RGL+ DL+QEGNIGLMKAV+KF++R+G+KFSTYATWWIRQAITR+IADQAR IRIPV Sbjct: 753 LGRGLELADLVQEGNIGLMKAVEKFDHRKGFKFSTYATWWIRQAITRAIADQARIIRIPV 812 Query: 455 HMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDD 514 H+ E++NKL S+ + + GR P EL+ + MPE K+ + +I P+ + Sbjct: 813 HVNESLNKLISASKVLTHKFGRGPKISELSLILSMPETKVENLKQILVM-----EPVAEA 867 Query: 515 EDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLE 574 + + + D P + + D+L GLT +E KVL +RFGI+ T+ TLE Sbjct: 868 DHNT--NGYVDWAAMSPEEEIIDDDRDTNIKDLLKGLTDKEKKVLELRFGINAATELTLE 925 Query: 575 EVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 EVG+QFDVTRERIRQIEAK+L+KL H SRS L F Sbjct: 926 EVGQQFDVTRERIRQIEAKSLKKLAHTSRSSHLAIFF 962 >UniRef50_D2R2I8 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2 Tax=Planctomycetaceae RepID=D2R2I8_9PLAN Length = 545 Score = 355 bits (912), Expect = 2e-96, Method: Composition-based stats. Identities = 189/560 (33%), Positives = 281/560 (50%), Gaps = 64/560 (11%) Query: 53 IQVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLT 112 I +E + + + A + T DPVRMY+ +MG + LL Sbjct: 34 IGTHDEFELDAFAEVDVEIDEIEVDVEVASEHGDELESVDATDDPVRMYLMQMGQIPLLN 93 Query: 113 REGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEE 172 R EID A+ IE + + S+ + +E +RV + RL I Sbjct: 94 RTQEIDSARTIEATRLKFRHSMLATDYVLQGAVELLERVRDGQLRLDRTI---------- 143 Query: 173 DLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTR 232 V + E + N D ++ + + + + Sbjct: 144 -------EVSVTNTSEKKRIMKRIWPNLSTLRHLLSANIADYNISISRSKPMHERRDAWK 196 Query: 233 DTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCV 292 ++ K + ++ L + L + + ++ R++T I Sbjct: 197 RLVRR-----------RNKCVRLVEEMNLRNNRLQPLFDKLSDILGRMKTLRSQI----- 240 Query: 293 EQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETG 352 ++ I +G T ++++ + L L +I ET Sbjct: 241 ------REANIHGVSGGRT----------------------AQQLRKELVHLMRITLETP 272 Query: 353 LTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL 412 T+++ R + AK+ + NLRLV+SIAKKY NRGL FLDLIQEGN GL Sbjct: 273 ATLKRR---IVRTNEYRENYDAAKRVLSAGNLRLVVSIAKKYRNRGLSFLDLIQEGNTGL 329 Query: 413 MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQ 472 M+AVDKFEY RGYKFSTYATWWIRQAITR+IADQ+RTIR+PVHMI+T++K+ ++RQ++Q Sbjct: 330 MRAVDKFEYARGYKFSTYATWWIRQAITRAIADQSRTIRVPVHMIDTMSKVRAVTRQLVQ 389 Query: 473 EMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPL 532 E+GREPTPEE+A + D R VLK+A++P+S++ P+GD +DS+ G+F+ D E PL Sbjct: 390 ELGREPTPEEVARVAGLTLDDARCVLKMARQPLSLDQPVGDHDDSYFGEFLADHREEDPL 449 Query: 533 DSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEA 592 ++L+ + + GL RE ++LR+R+G+ YTLEEVGK F VTRER+RQIE Sbjct: 450 YDTHQQALKHQIEEAMQGLNYREREILRLRYGLTDGYAYTLEEVGKIFSVTRERVRQIET 509 Query: 593 KALRKLRHPSRSEVLRSFLD 612 KA+RKL+ P R+ L SFLD Sbjct: 510 KAVRKLQQPYRNRSLTSFLD 529 >UniRef50_Q1NY91 RNA polymerase sigma factor n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NY91_9DELT Length = 540 Score = 349 bits (895), Expect = 2e-94, Method: Composition-based stats. Identities = 203/562 (36%), Positives = 288/562 (51%), Gaps = 80/562 (14%) Query: 54 QVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTR 113 Q+ +E D A++ A + A + +S + DPV++Y++EMG+V LL+ Sbjct: 57 QLTDEDGDEHAPAAAQDEASDGAGADDEPYVWPGDSGGDQV-DPVKVYLQEMGSVPLLST 115 Query: 114 EGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEED 173 E E + +EA E + + Sbjct: 116 EEE----------------------------IAVAREIEAGELLIQQALL---------- 137 Query: 174 LAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRD 233 AP A S+L + + + + D AD ++ E + Sbjct: 138 TAPPAIAYLSKLIDKVMAGNRQLSDLLRGLDEAD----------KKTMGETAKRLHWQLT 187 Query: 234 TIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVE 293 R +A E+L + N R + R+ + +L Sbjct: 188 EADRLARENAALNRELLAPATNR--------------NQARQLKTRITRNNKARAQL--- 230 Query: 294 QCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQK--LQQIEEET 351 F + S A A + E L+ + A QQ + Sbjct: 231 ------------FAEDRFSSKHLQAMTARLGRFEESLNRQRAALSEAELPAWRQQCLQNH 278 Query: 352 GLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIG 411 GL E + +I ++ G+ ++ AK +V+ANLRLV+S+AKKY RGLQ LDLIQEGNIG Sbjct: 279 GLDQEGLAEIQAGIARGQEVSQEAKNRLVQANLRLVVSVAKKYAGRGLQLLDLIQEGNIG 338 Query: 412 LMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQML 471 LMKAV+KFEYRRGYKFSTYATWWIRQA+TR+IADQ RTIRIPVHMI+TIN++ + +++ Sbjct: 339 LMKAVEKFEYRRGYKFSTYATWWIRQAVTRAIADQGRTIRIPVHMIDTINRMLKGAKEFQ 398 Query: 472 QEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELP 531 ++ GREPTP+E+A+ + + K++ VLKIAKEP+S++TP+G+ DS L DFIEDT P Sbjct: 399 RQHGREPTPDEMAQHLGVEVAKVKSVLKIAKEPLSLDTPVGNSNDSFLADFIEDTEAASP 458 Query: 532 LDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIE 591 ++ E+L++ VL L+ RE VLR+RFG+D D TLEEVG+ F VTRERIRQIE Sbjct: 459 DEATIYENLQSNLRRVLKTLSPREEMVLRLRFGLDTAMDLTLEEVGENFAVTRERIRQIE 518 Query: 592 AKALRKLRHPSRSEVLRSFLDD 613 AKAL+KL+HP+R L SF DD Sbjct: 519 AKALKKLKHPARRNQLSSFYDD 540 >UniRef50_C4G0D3 RNA polymerase sigma factor n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G0D3_ABIDE Length = 409 Score = 345 bits (884), Expect = 4e-93, Method: Composition-based stats. Identities = 157/268 (58%), Positives = 210/268 (78%), Gaps = 3/268 (1%) Query: 343 KLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL 402 L++I L++++ ++ ++++ G+ + A + E+NLRLV+SIAKKY RGL FL Sbjct: 142 YLKEIGNYPLLSMDEEVELAKKIAEGD---QYATDRLTESNLRLVVSIAKKYVGRGLSFL 198 Query: 403 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 462 DLIQEGN+GL+KAVDKF+Y +GYKFSTYATWWIRQAITRSIADQ+RTIRIPVHM E INK Sbjct: 199 DLIQEGNLGLIKAVDKFDYSKGYKFSTYATWWIRQAITRSIADQSRTIRIPVHMSEVINK 258 Query: 463 LNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDF 522 RISR +LQE+GREPT EE+A+ M +P +K+R+++KI+ +PIS++TPIG+++DSHLGDF Sbjct: 259 AYRISRSLLQELGREPTEEEIAKEMNLPVEKVREIMKISADPISLDTPIGEEDDSHLGDF 318 Query: 523 IEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDV 582 I+D T+ P D+A L+ +L L+ RE +VL +RFG+ TLEEVGK+F+V Sbjct: 319 IKDDTIMGPEDAAAYTMLQDQIQKLLTTLSEREQRVLILRFGLLDGRTRTLEEVGKEFNV 378 Query: 583 TRERIRQIEAKALRKLRHPSRSEVLRSF 610 TRERIRQIEAKALRKLRHP+R+ +LR F Sbjct: 379 TRERIRQIEAKALRKLRHPNRARMLRGF 406 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 68/162 (41%), Gaps = 6/162 (3%) Query: 2 EQNPQSQLKLLVTRGKEQGYLTYAE-VNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP 60 + + ++L+ LV ++ + ++ +ND+ +DS E I + GI +M Sbjct: 45 KDDFLTKLEGLVEIARKNKDVIESDKLNDYFKSLNIDSGHYEKIYDYLESNGITIMNIND 104 Query: 61 DADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA 120 + + + A + + + DPV++Y++E+G LL+ + E+++A Sbjct: 105 ---IDDDLFDDTLPEVDDEADLEIGDDITLSIMSDDPVKIYLKEIGNYPLLSMDEEVELA 161 Query: 121 KRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLI 162 K+I +G + E + ++ + DLI Sbjct: 162 KKIAEGDQYATDRLTES--NLRLVVSIAKKYVGRGLSFLDLI 201 >UniRef50_B9CNX8 RNA polymerase sigma factor n=3 Tax=Actinobacteria (class) RepID=B9CNX8_9ACTN Length = 455 Score = 342 bits (877), Expect = 2e-92, Method: Composition-based stats. Identities = 156/299 (52%), Positives = 219/299 (73%) Query: 315 WFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARR 374 + ++ + + +++ ++ + Q++E+ IE + RR+ E Sbjct: 157 YLKEIGKVDLLTASEEVNLAMKIEAGTEATQKLEDFEDEKIELSRAEQRRLMRIEQVGLD 216 Query: 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 434 AK++++ ANLRLV+SIAK+Y RG+ FLDLIQEGN+GL++AV+KF+Y +G+KFSTYATWW Sbjct: 217 AKQQLISANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWW 276 Query: 435 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKI 494 IRQAITR+IADQARTIRIPVHM+ETINKL R+ RQ+LQ++GR+PTPEE+ M M D++ Sbjct: 277 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPTPEEIGAEMGMSPDRV 336 Query: 495 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAR 554 R++ KI++EP+S+ETPIG++EDS LGDFIED+T P D+A+ LR VL GL R Sbjct: 337 REIQKISQEPVSLETPIGEEEDSQLGDFIEDSTAIAPPDAASDSMLREQLEQVLDGLADR 396 Query: 555 EAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 E KV++ RFG++ TLEEVG++F VTRERIRQIE+K L KLRHPSRS L+ ++++ Sbjct: 397 ERKVIKFRFGLEDGRPRTLEEVGREFGVTRERIRQIESKTLAKLRHPSRSSRLKDYMEE 455 Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 2/80 (2%) Query: 55 VMEEAPDADDLM--LAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLT 112 V+ EA + + + + + + A+ + S + T DPVRMY++E+G V+LLT Sbjct: 109 VLNEARQVKEALRSVPKAKTSKPKRSSRARARRADTSTVMLTGDPVRMYLKEIGKVDLLT 168 Query: 113 REGEIDIAKRIEDGINQVQC 132 E+++A +IE G Q Sbjct: 169 ASEEVNLAMKIEAGTEATQK 188 >UniRef50_P52328 RNA polymerase sigma factor rpoD n=191 Tax=Bacteria RepID=RPSD2_BACSP Length = 377 Score = 342 bits (877), Expect = 3e-92, Method: Composition-based stats. Identities = 167/270 (61%), Positives = 214/270 (79%), Gaps = 3/270 (1%) Query: 343 KLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL 402 L++I L+ + ++ +R+ G+ + AK+ + EANLRLV+SIAK+Y RG+ FL Sbjct: 111 YLKEIGRVPLLSADDEVELAKRIMNGDEE---AKRRLAEANLRLVVSIAKRYVGRGMLFL 167 Query: 403 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 462 DLIQEGN+GL+KAV+KF++ +G+KFSTYATWWIRQAITR+IADQARTIRIPVHM+ETINK Sbjct: 168 DLIQEGNMGLIKAVEKFDHNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINK 227 Query: 463 LNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDF 522 L R+SRQ+LQE+GREPTPEE+A M + +K+R+++KIA+EP+S+ETPIG+++DSHLGDF Sbjct: 228 LIRVSRQLLQELGREPTPEEIAAEMELSVEKVREIMKIAQEPVSLETPIGEEDDSHLGDF 287 Query: 523 IEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDV 582 IED P D+A E L+ DVL LT RE VLR+RFG+D TLEEVGK F V Sbjct: 288 IEDQEALTPADAAAYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGV 347 Query: 583 TRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 TRERIRQIEAKALRKLRHPSRS+ L+ FL+ Sbjct: 348 TRERIRQIEAKALRKLRHPSRSKRLKDFLE 377 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 37/152 (24%), Positives = 73/152 (48%), Gaps = 2/152 (1%) Query: 11 LLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLAEN 70 L+ +GK++ L Y ++ + L D +Q+++ + + D+GI+V+ E + + Sbjct: 21 QLIEQGKKRSSLNYKDIMEKLSPFDQDPEQMDEFYEHLGDLGIEVVNENDEEVSNLRQGE 80 Query: 71 TADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQV 130 D + + + DPVRMY++E+G V LL+ + E+++AKRI +G + Sbjct: 81 DHDGNDNDDFNFDDDLSLPPGIKINDPVRMYLKEIGRVPLLSADDEVELAKRIMNGDEEA 140 Query: 131 QCSVAEYPEAITYLLEQYDRVEAEEARLSDLI 162 + +AE + ++ R DLI Sbjct: 141 KRRLAEA--NLRLVVSIAKRYVGRGMLFLDLI 170 >UniRef50_Q3AEW8 RNA polymerase sigma factor n=9 Tax=Clostridia RepID=Q3AEW8_CARHZ Length = 370 Score = 340 bits (873), Expect = 8e-92, Method: Composition-based stats. Identities = 171/270 (63%), Positives = 219/270 (81%), Gaps = 3/270 (1%) Query: 343 KLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL 402 L++I LT E+ ++ +R G+ + AK+++ EANLRLV+SIAK+Y RG+ FL Sbjct: 104 YLKEIGRVPLLTPEEEIELAKRKEEGDEE---AKRKLAEANLRLVVSIAKRYVGRGMLFL 160 Query: 403 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 462 DLIQEGN+GL+KAV+KF+YR+GYKFSTYATWWIRQAITR+IADQARTIRIPVHM+ETINK Sbjct: 161 DLIQEGNLGLLKAVEKFDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINK 220 Query: 463 LNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDF 522 L R+SR +LQE+GREPTPEE+A+ M + EDK+R+++KIA+EP+S+ETPIG++EDSHLGDF Sbjct: 221 LIRVSRNLLQELGREPTPEEIAKEMGISEDKVREIMKIAQEPVSLETPIGEEEDSHLGDF 280 Query: 523 IEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDV 582 +ED + P++ A+ LR +VL LT RE KVLR+RFG+D TLEEVG+ F V Sbjct: 281 VEDPDAKAPVEEASYTLLREQLDEVLKTLTEREQKVLRLRFGLDDGRARTLEEVGQIFGV 340 Query: 583 TRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 TRERIRQIEAKALRKLRHPSRS+ L+ FL+ Sbjct: 341 TRERIRQIEAKALRKLRHPSRSKKLKDFLE 370 Score = 114 bits (286), Expect = 9e-24, Method: Composition-based stats. Identities = 47/158 (29%), Positives = 84/158 (53%), Gaps = 4/158 (2%) Query: 7 SQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDAD--D 64 +L +V +GK++G LTY ++ D L ++S+QI+++ + + + GI+V+ E P+ + Sbjct: 8 EKLMEIVEKGKKRGVLTYNDLLDSLQNVDINSEQIDELYEYLANQGIEVVPEIPELELDS 67 Query: 65 LMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIE 124 + ++ D ++ L E DPVRMY++E+G V LLT E EI++AKR E Sbjct: 68 INSLDDDVDFKPSDIDEVDLDLTIPEGIAIDDPVRMYLKEIGRVPLLTPEEEIELAKRKE 127 Query: 125 DGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLI 162 +G + + +AE + ++ R DLI Sbjct: 128 EGDEEAKRKLAEA--NLRLVVSIAKRYVGRGMLFLDLI 163 >UniRef50_P52331 RNA polymerase sigma factor rpoD n=60 Tax=Bacteria RepID=RPOD_LISMO Length = 374 Score = 340 bits (872), Expect = 9e-92, Method: Composition-based stats. Identities = 165/270 (61%), Positives = 211/270 (78%), Gaps = 3/270 (1%) Query: 343 KLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL 402 L++I LT ++ + +R+ G+ + AK + EANLRLV+SIAK+Y RG+ FL Sbjct: 108 YLKEIGRVDLLTADEEIALAKRIEAGDIE---AKGRLAEANLRLVVSIAKRYVGRGMLFL 164 Query: 403 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 462 DLIQEGN+GLMKAV+KF++ +G+KFSTYATWWIRQAITR+IADQARTIRIPVHM+ETINK Sbjct: 165 DLIQEGNMGLMKAVEKFDFNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINK 224 Query: 463 LNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDF 522 L R+ R +LQ++GR+P+PEE+ E M +P +K+R++LKIA+EP+S+ETPIG+++DSHLGDF Sbjct: 225 LIRVQRSLLQDLGRDPSPEEIGEEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDF 284 Query: 523 IEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDV 582 IED P D A E L+ DVL LT RE VLR+RFG+D TLEEVG+ F V Sbjct: 285 IEDQDATSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGV 344 Query: 583 TRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 TRERIRQIEAKALRKLRHPSRS+ L+ FL+ Sbjct: 345 TRERIRQIEAKALRKLRHPSRSKQLKDFLE 374 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 45/153 (29%), Positives = 79/153 (51%), Gaps = 6/153 (3%) Query: 10 KLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLAE 69 + L+ GK++G LTYA++ L +DSDQ+++ ++ + + GI+V ++A D D Sbjct: 21 EALIEEGKKKGILTYAKIAARLAPFTLDSDQMDEYLEHVGEAGIEVSDDADDEDPDETEL 80 Query: 70 NTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQ 129 + + + + + DPVRMY++E+G V+LLT + EI +AKRIE G + Sbjct: 81 VKEETE----SFDLTDMSVPPGVKINDPVRMYLKEIGRVDLLTADEEIALAKRIEAGDIE 136 Query: 130 VQCSVAEYPEAITYLLEQYDRVEAEEARLSDLI 162 + +AE + ++ R DLI Sbjct: 137 AKGRLAEA--NLRLVVSIAKRYVGRGMLFLDLI 167 >UniRef50_Q04506 RNA polymerase sigma factor rpoD n=15 Tax=Bacteria RepID=RPOD_LACLA Length = 386 Score = 340 bits (871), Expect = 1e-91, Method: Composition-based stats. Identities = 163/269 (60%), Positives = 212/269 (78%) Query: 343 KLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL 402 L++I +++++ + + G A AK+ + EANLRLV+SIAK+Y+ RG+QFL Sbjct: 118 YLKEIGRYPLISLDEETKLAEAIIAGGEGAEFAKQMLAEANLRLVVSIAKRYSGRGMQFL 177 Query: 403 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 462 DLIQEGN+GLMKAVDKF++ +G+KFSTYATWWIRQAITR+IADQARTIRIPVHM+ETINK Sbjct: 178 DLIQEGNMGLMKAVDKFDHTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINK 237 Query: 463 LNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDF 522 L R+ R +LQE+GR+P+PEE+ + + M DK+R+VLKIA+EP+S+ETPIG+++DSHLGDF Sbjct: 238 LIRVQRNLLQELGRDPSPEEIGKELHMAPDKVREVLKIAQEPVSLETPIGEEDDSHLGDF 297 Query: 523 IEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDV 582 IED +E P+D LR +V+ LT RE VLRMRFG+D +TLE+VGKQF V Sbjct: 298 IEDDVIESPVDYTNRILLREQLDEVMDTLTDREENVLRMRFGLDDGRMHTLEDVGKQFKV 357 Query: 583 TRERIRQIEAKALRKLRHPSRSEVLRSFL 611 TRERIRQIEAKA++KLRHP RS+ LR F+ Sbjct: 358 TRERIRQIEAKAIKKLRHPRRSKPLRDFM 386 Score = 73.1 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 39/159 (24%), Positives = 69/159 (43%), Gaps = 5/159 (3%) Query: 6 QSQLKLLVTRGKEQGYLTYAEVNDHLP-EDIVDSDQIEDIIQMINDMGIQVMEEAPDADD 64 + +K +T+ K G E+ D L + + D +ED+ + I D GI ++++ + Sbjct: 25 EKAVKSYITKRKPLGEALDEEIMDELSVKFGIVDDALEDLFKQIQDAGISIVDKDGNPSP 84 Query: 65 LMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIE 124 L L DE E + R DPVRMY++E+G L++ + E +A+ I Sbjct: 85 LAL---VTDEIEKEEVSDTAMDEIVTNVRIDDPVRMYLKEIGRYPLISLDEETKLAEAII 141 Query: 125 DGINQVQCSVAEYPEA-ITYLLEQYDRVEAEEARLSDLI 162 G + + EA + ++ R + DLI Sbjct: 142 AGGEGAEFAKQMLAEANLRLVVSIAKRYSGRGMQFLDLI 180 >UniRef50_B8FTY1 RNA polymerase sigma factor n=3 Tax=Bacteria RepID=B8FTY1_DESHD Length = 372 Score = 339 bits (869), Expect = 2e-91, Method: Composition-based stats. Identities = 166/270 (61%), Positives = 216/270 (80%), Gaps = 3/270 (1%) Query: 343 KLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL 402 L++I LT E+ ++ +RM G+ AK+ + EANLRLV+SIAK+Y RG+ FL Sbjct: 106 YLKEIGRVPLLTAEEEIELAKRMEQGDE---SAKRRLAEANLRLVVSIAKRYVGRGMLFL 162 Query: 403 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 462 DLIQEGN+GL+KAV+KF+Y +G+KFSTYATWWIRQAITR+IADQARTIRIPVHM+ETINK Sbjct: 163 DLIQEGNLGLIKAVEKFDYVKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINK 222 Query: 463 LNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDF 522 L R+SRQ+LQE+GREPTPEE+A +M + +++R+++KIA+EP+S+ETPIG++EDSHLGDF Sbjct: 223 LIRVSRQLLQELGREPTPEEIAVQMDISVERVREIMKIAQEPVSLETPIGEEEDSHLGDF 282 Query: 523 IEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDV 582 I D P ++A+ L+ +VL LT RE KVLR+RFG+D TLEEVG++F V Sbjct: 283 IPDEDAPAPSEAASFILLKEQLEEVLETLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGV 342 Query: 583 TRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 TRERIRQIEAKALRKLRHPSRS+ L+ +L+ Sbjct: 343 TRERIRQIEAKALRKLRHPSRSKKLKDYLE 372 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 49/157 (31%), Positives = 81/157 (51%), Gaps = 5/157 (3%) Query: 9 LKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLA 68 +K L+ +GK++G LTY E+ D L + ++QI+++ + I MGI ++ EA + + L Sbjct: 11 VKELIQKGKKKGSLTYREIMDTLQGIELTAEQIDEVYEQIGRMGIDIIPEAGEVEALEKV 70 Query: 69 ENTADEDAAEAAAQVLSSV---ESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIED 125 + +D + + V E DPVRMY++E+G V LLT E EI++AKR+E Sbjct: 71 TDEIPDDVDDPDVEEEVDVDLSIPEGVGIDDPVRMYLKEIGRVPLLTAEEEIELAKRMEQ 130 Query: 126 GINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLI 162 G + +AE + ++ R DLI Sbjct: 131 GDESAKRRLAEA--NLRLVVSIAKRYVGRGMLFLDLI 165 >UniRef50_P0A4J0 RNA polymerase sigma factor rpoD n=39 Tax=Bacteria RepID=RPOD_STRR6 Length = 369 Score = 339 bits (869), Expect = 2e-91, Method: Composition-based stats. Identities = 171/271 (63%), Positives = 216/271 (79%), Gaps = 3/271 (1%) Query: 343 KLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL 402 L++I LT E+ K++ + G+ + AK+ + EANLRLV+SIAK+Y RG+QFL Sbjct: 102 YLKEIGVVPLLTNEEEKELALAVEAGDIE---AKQRLAEANLRLVVSIAKRYVGRGMQFL 158 Query: 403 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 462 DLIQEGN+GLMKAVDKF+Y +G+KFSTYATWWIRQAITR+IADQARTIRIPVHM+ETINK Sbjct: 159 DLIQEGNMGLMKAVDKFDYSKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINK 218 Query: 463 LNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDF 522 L R R +LQE+G++PTPE++AERM M DK+R++LKIA+EP+S+ETPIG+++DSHLGDF Sbjct: 219 LVREQRNLLQELGQDPTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDF 278 Query: 523 IEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDV 582 IED +E P+D T LR ++L LT RE VLR+RFG+D TLE+VGK F+V Sbjct: 279 IEDEVIENPVDYTTRIVLREQLDEILDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNV 338 Query: 583 TRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 TRERIRQIEAKALRKLR PSRS+ LR F++D Sbjct: 339 TRERIRQIEAKALRKLRQPSRSKPLRDFIED 369 Score = 92.8 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 9/156 (5%) Query: 8 QLKLLVTRGKEQGYLTYAEVNDHL-PEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLM 66 Q+ + K++G T E+N L +D+D IED++Q I D GI + + + + Sbjct: 14 QVAEFIRNHKQKGTATDDEINASLVIPFTLDADGIEDLLQRIQDAGISITDNEGNPSARV 73 Query: 67 LAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDG 126 L ++E+ E + + L + S + DPVRMY++E+G V LLT E E ++A +E G Sbjct: 74 L----SNEEEPELSDEDL--IGSTSAKVNDPVRMYLKEIGVVPLLTNEEEKELALAVEAG 127 Query: 127 INQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLI 162 + + +AE + ++ R + DLI Sbjct: 128 DIEAKQRLAEA--NLRLVVSIAKRYVGRGMQFLDLI 161 >UniRef50_B0TG57 RNA polymerase sigma factor n=11 Tax=Bacteria RepID=B0TG57_HELMI Length = 371 Score = 338 bits (867), Expect = 4e-91, Method: Composition-based stats. Identities = 170/270 (62%), Positives = 218/270 (80%), Gaps = 3/270 (1%) Query: 343 KLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL 402 L++I L+ E+ ++ +RM G+ AK+ + EANLRLV+SIAK+Y RG+ FL Sbjct: 105 YLKEIGRVPLLSAEEEIELAKRMEEGDE---AAKRRLAEANLRLVVSIAKRYVGRGMLFL 161 Query: 403 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 462 DLIQEGN+GL+KAV+KF+YR+GYKFSTYATWWIRQAITR+IADQARTIRIPVHM+ETINK Sbjct: 162 DLIQEGNLGLIKAVEKFDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINK 221 Query: 463 LNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDF 522 L R+SRQ+LQE GREP PEE+A+ M +P +++R+++KIA+EP+S+ETPIG++EDSHLGDF Sbjct: 222 LIRVSRQLLQEYGREPMPEEIAKEMDIPVERVREIMKIAQEPVSLETPIGEEEDSHLGDF 281 Query: 523 IEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDV 582 IED P ++A+ L+ +VL LTARE KVLR+RFG+D TLEEVG++F V Sbjct: 282 IEDQDAPAPAEAASFILLKEQLEEVLETLTAREMKVLRLRFGLDDGRSRTLEEVGQEFGV 341 Query: 583 TRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 TRERIRQIEAKALRKLRHPSRS+ L+ +LD Sbjct: 342 TRERIRQIEAKALRKLRHPSRSKKLKDYLD 371 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 49/152 (32%), Positives = 80/152 (52%), Gaps = 5/152 (3%) Query: 11 LLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLAEN 70 L+ +GK++G LTY E+ D L + +DQ++DI + + +MGI V+ E +++ L AE Sbjct: 18 DLIAKGKKKGVLTYQEIMDALQGVEMTADQVDDIYEQLGNMGIDVVPENTESESLDKAEE 77 Query: 71 TADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQV 130 + E + E DPVRMY++E+G V LL+ E EI++AKR+E+G Sbjct: 78 PIIREEEEIEVDL---SVPEGVGIDDPVRMYLKEIGRVPLLSAEEEIELAKRMEEGDEAA 134 Query: 131 QCSVAEYPEAITYLLEQYDRVEAEEARLSDLI 162 + +AE + ++ R DLI Sbjct: 135 KRRLAEA--NLRLVVSIAKRYVGRGMLFLDLI 164 >UniRef50_C9KNX0 RNA polymerase sigma factor n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KNX0_9FIRM Length = 373 Score = 338 bits (866), Expect = 4e-91, Method: Composition-based stats. Identities = 172/270 (63%), Positives = 215/270 (79%), Gaps = 3/270 (1%) Query: 343 KLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL 402 L++I LT E+ + +RM G+ + A+K + EANLRLV+SIAK+Y RG+ FL Sbjct: 107 YLKEIGRVPLLTAEEEVALAKRMEAGDEE---AQKRLAEANLRLVVSIAKRYVGRGMLFL 163 Query: 403 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 462 DLIQEGN+GL+KAV+KF+Y +GYKFSTYATWWIRQAITR+IADQARTIRIPVHM+ETINK Sbjct: 164 DLIQEGNLGLIKAVEKFDYNKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINK 223 Query: 463 LNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDF 522 L R+SRQ+LQ++GREPTPEE+A+ M + D++R+++KIA+EP+S+ETPIG++EDSHLGDF Sbjct: 224 LIRVSRQLLQQLGREPTPEEIAKEMEIGVDRVREIMKIAQEPVSLETPIGEEEDSHLGDF 283 Query: 523 IEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDV 582 IED P D+A+ L+ DVL LT RE KVLR+RFG+D TLEEVG+ F V Sbjct: 284 IEDQDAPAPADAASFMLLKEQLEDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGQNFGV 343 Query: 583 TRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 TRERIRQIEAKALRKLRHPSRS L+ FLD Sbjct: 344 TRERIRQIEAKALRKLRHPSRSRKLKDFLD 373 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 44/159 (27%), Positives = 76/159 (47%), Gaps = 8/159 (5%) Query: 5 PQSQLKLLVTRGKEQG-YLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDAD 63 ++ L+ +GK+ G LTY E+ D L + + D+I+ + + GI++++++ D Sbjct: 15 SSEIVEGLLAKGKKNGGTLTYGELIDALQKQALSPDEIDTMYDTFSKRGIEIVDDSQDNS 74 Query: 64 DLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRI 123 + ++ E V E DPVRMY++E+G V LLT E E+ +AKR+ Sbjct: 75 SDDDVDIDKSDEDVEIDLSV-----PEGVSIDDPVRMYLKEIGRVPLLTAEEEVALAKRM 129 Query: 124 EDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLI 162 E G + Q +AE + ++ R DLI Sbjct: 130 EAGDEEAQKRLAEA--NLRLVVSIAKRYVGRGMLFLDLI 166 >UniRef50_D1C1P9 RNA polymerase sigma factor n=6 Tax=Chloroflexi RepID=D1C1P9_SPHTD Length = 538 Score = 337 bits (865), Expect = 6e-91, Method: Composition-based stats. Identities = 159/301 (52%), Positives = 214/301 (71%) Query: 312 SDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAK 371 S ++ + + L +E+ R + EE L + R + Sbjct: 238 SREELEESLRRRRIEYDLLPSPIQELIRPVDAFPTDEEVWELLRRDEAALQARWEEFVVR 297 Query: 372 ARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYA 431 A+K++ EANLRLV+S+AKKY RG+ LDL+QEGN+GL++AV+KF++ +G+KFSTYA Sbjct: 298 GDIARKKLTEANLRLVVSVAKKYGGRGMSMLDLVQEGNLGLIRAVEKFQHHKGFKFSTYA 357 Query: 432 TWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPE 491 TWWIRQAITR+IADQARTIRIPVHM+E IN+L R SR++ QE+GREPT EE+A M +P Sbjct: 358 TWWIRQAITRAIADQARTIRIPVHMVEQINRLIRTSRRLQQELGREPTSEEIAAEMGLPP 417 Query: 492 DKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGL 551 DK+R++LKI++EP+S+E PIG++EDS+LGDFIED+ P D+A+ + L+ DVL L Sbjct: 418 DKVREILKISQEPVSLEMPIGEEEDSNLGDFIEDSKALAPSDAASLKLLKEQVDDVLGSL 477 Query: 552 TAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 RE +VL +RFG+D TLEEVG++F VTRERIRQIEAKALRKLRHPSRS+ LR +L Sbjct: 478 GDRERRVLELRFGLDDGRTRTLEEVGREFGVTRERIRQIEAKALRKLRHPSRSKKLRDYL 537 Query: 612 D 612 + Sbjct: 538 E 538 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 66/119 (55%), Gaps = 3/119 (2%) Query: 9 LKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLA 68 ++ ++ R +EQGYL+ E+ D + + ++ I + +M + V++ A DA DL Sbjct: 42 IRRIIERAREQGYLSAEELAD-VASAPGGAAAVDAITSQLAEMNVPVLDPAEDAPDL--P 98 Query: 69 ENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGI 127 + A E + + LS V+ DPVR+Y+RE+G V+LLT E E+ +A+ +E G Sbjct: 99 DVAAVEADNDLFSTELSDVDLSGVSLDDPVRIYLREIGRVQLLTGEQEVALAQAMERGD 157 >UniRef50_Q99TT5 RNA polymerase sigma factor rpoD n=78 Tax=Firmicutes RepID=RPOD_STAAN Length = 368 Score = 337 bits (865), Expect = 6e-91, Method: Composition-based stats. Identities = 168/304 (55%), Positives = 225/304 (74%), Gaps = 6/304 (1%) Query: 309 NETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIG 368 NE + + + + + +++ V L+++ ++ L+ ++ ++ +R+ G Sbjct: 71 NEKDSSDTDEKLNPSDLSAPPGVKINDPVRMYLKEIGRV---NLLSAQEEIELAKRIEQG 127 Query: 369 EAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS 428 + AK + EANLRLV+SIAK+Y RG+ FLDLIQEGN+GL+KAV+KF++ +G+KFS Sbjct: 128 DE---VAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFS 184 Query: 429 TYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERML 488 TYATWWIRQAITR+IADQARTIRIPVHM+ETINKL R+ RQ+LQ++GR+P PEE+ E M Sbjct: 185 TYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMD 244 Query: 489 MPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVL 548 +P +K+R+VLKIA+EP+S+ETPIG+++DSHLGDFIED + P D A E L+ DVL Sbjct: 245 LPAEKVREVLKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVL 304 Query: 549 AGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLR 608 LT RE VLR+RFG+D TLEEVGK F VTRERIRQIEAKALRKLRHPSRS+ L+ Sbjct: 305 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 364 Query: 609 SFLD 612 F+D Sbjct: 365 DFMD 368 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 15/153 (9%) Query: 10 KLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLAE 69 K L+ +GK++G+L++ E+ + L +DSDQ++D +ND I ++ E Sbjct: 24 KQLIEKGKKEGHLSHEEIAEKLQNFDIDSDQMDDFFDQLNDNDISLVNEK---------- 73 Query: 70 NTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQ 129 D + + DPVRMY++E+G V LL+ + EI++AKRIE G Sbjct: 74 ---DSSDTDEKLNPSDLSAPPGVKINDPVRMYLKEIGRVNLLSAQEEIELAKRIEQGDEV 130 Query: 130 VQCSVAEYPEAITYLLEQYDRVEAEEARLSDLI 162 + +AE + ++ R DLI Sbjct: 131 AKSRLAEA--NLRLVVSIAKRYVGRGMLFLDLI 161 >UniRef50_UPI0001AF1456 RNA polymerase sigma factor n=2 Tax=Streptomyces RepID=UPI0001AF1456 Length = 430 Score = 336 bits (862), Expect = 2e-90, Method: Composition-based stats. Identities = 138/277 (49%), Positives = 199/277 (71%) Query: 336 EVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYT 395 E+ R ++ EE+ LT + + + R AK+ ++EANLRLV+S+AK+Y Sbjct: 154 ELARRVEAGLFAEEKLRLTPDLDSRLAHDLDRLVVMGRMAKRRLIEANLRLVVSVAKRYV 213 Query: 396 NRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVH 455 RGL LDL+QEGN+GL++AV+KF+Y RGYKFSTYATWWIRQA++R++ADQARTIR+PVH Sbjct: 214 GRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVH 273 Query: 456 MIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDE 515 ++E IN++ R+ R+MLQE GREPTPEE+A + +P +++ +VL++A+EP+S+ P+G+++ Sbjct: 274 VVELINRVVRVQRRMLQERGREPTPEEVAAHLDLPPERVGEVLRLAQEPVSLHAPVGEED 333 Query: 516 DSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEE 575 D LGD IED P++SA LR VL+ L RE KV+++R+G+ TLEE Sbjct: 334 DVALGDLIEDGDAASPVESAAFLLLREHLEAVLSTLGERERKVVQLRYGLVDGRPRTLEE 393 Query: 576 VGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 +G+ F VTRERIRQIE+K L KLR + ++ LR +LD Sbjct: 394 IGRIFGVTRERIRQIESKTLNKLRDHAFADQLRGYLD 430 Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 29/55 (52%) Query: 73 DEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGI 127 D A+ G ++D R Y+RE+G + LLT E+++A+R+E G+ Sbjct: 109 DAREPAEPAETPPPRPETGGPSSDLFRQYLREIGRIPLLTAAEEVELARRVEAGL 163 >UniRef50_Q47RL2 RNA polymerase sigma factor n=3 Tax=Bacteria RepID=Q47RL2_THEFY Length = 388 Score = 333 bits (854), Expect = 1e-89, Method: Composition-based stats. Identities = 143/321 (44%), Positives = 212/321 (66%), Gaps = 7/321 (2%) Query: 297 MPKKNFITLFTGNETSDT----WFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETG 352 + + +F +S + + +E+ ++++ + L Q++ Sbjct: 68 VDRDDFAEHPETRTSSGDIVHAYLREIGRVPLLTAEEEVELAKAIEIGLYAEQKLRAART 127 Query: 353 LTIEQVKDINRRMSIGE--AKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNI 410 + + E + + AK+ ++E+NLRLV+S+AK+Y RGL LDLIQEGN+ Sbjct: 128 GPVPAQYSPEWFEDLNELVREGKLAKRRLIESNLRLVVSVAKRYLGRGLALLDLIQEGNL 187 Query: 411 GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQM 470 GL++AV+KF+Y RGYKFSTYATWWIRQAITR+IADQARTIR+PVHM+E+IN+L R R++ Sbjct: 188 GLIRAVEKFDYTRGYKFSTYATWWIRQAITRAIADQARTIRVPVHMVESINRLARTRRRL 247 Query: 471 LQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLEL 530 QE+GREPT EL+ + + D++ ++ ++++EPIS+ TPIG +EDS GDFIEDT Sbjct: 248 HQELGREPTLHELSRELNVDHDRVVEIHRVSQEPISLHTPIG-EEDSAFGDFIEDTDAVP 306 Query: 531 PLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQI 590 P+++A L+ VL GL+ RE +V+ +RFG++ +TLEEVG++F VTRERIRQI Sbjct: 307 PVEAAAFVMLQDQLAQVLGGLSEREQRVITLRFGLEDGKPHTLEEVGRKFGVTRERIRQI 366 Query: 591 EAKALRKLRHPSRSEVLRSFL 611 E+K L KLR PSR+ +LR +L Sbjct: 367 ESKTLAKLRQPSRARILRDYL 387 Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 43/117 (36%), Gaps = 9/117 (7%) Query: 46 QMINDMGIQVMEEAPDADDLMLAENTADE-------DAAEAAAQVLSSVESEIGRTTDPV 98 + D +++E A E + + + + D V Sbjct: 28 SSMRDTAAEIVERRTPAGPAAAVERSGGPPVEAVGGEPEYVDRDDFAEHPETRTSSGDIV 87 Query: 99 RMYMREMGTVELLTREGEIDIAKRIEDGI--NQVQCSVAEYPEAITYLLEQYDRVEA 153 Y+RE+G V LLT E E+++AK IE G+ Q + P Y E ++ + Sbjct: 88 HAYLREIGRVPLLTAEEEVELAKAIEIGLYAEQKLRAARTGPVPAQYSPEWFEDLNE 144 >UniRef50_A7NGG2 RNA polymerase sigma factor n=15 Tax=Chloroflexi (class) RepID=A7NGG2_ROSCS Length = 405 Score = 333 bits (854), Expect = 1e-89, Method: Composition-based stats. Identities = 139/298 (46%), Positives = 207/298 (69%), Gaps = 5/298 (1%) Query: 315 WFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARR 374 + +N +++ ++++V R Q ++++ +E++ ++ + + Sbjct: 113 YLREIGRVNLLTAQEEIMLAQQVERGEQANERLQNGDYTPVERL-----QLHRWVQEGQA 167 Query: 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 434 A++ +++ANLRLV+SIAKKY RG+ LDLIQEGNIGLM+A +KF+YR+GYKFSTYATWW Sbjct: 168 ARERLIQANLRLVVSIAKKYLGRGMSLLDLIQEGNIGLMRATEKFDYRKGYKFSTYATWW 227 Query: 435 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKI 494 IRQAITR IADQ+RTIR+PVH+ ETIN++ R S ++ Q GR+PTP+E+A + +P +K+ Sbjct: 228 IRQAITRVIADQSRTIRLPVHVGETINRVMRTSNRIQQTTGRDPTPDEIALELGIPVEKV 287 Query: 495 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAR 554 R+VL+ A++ IS+ETPIG + DS L DFIED P++SA++ LR L L R Sbjct: 288 RRVLEAARQTISLETPIGPEGDSVLADFIEDGKGATPMESASSHILREQIDSALEKLPER 347 Query: 555 EAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 E +++++R+G+ TLEEVG++F +TRERIRQIEA+ LRKLRHP LR +L+ Sbjct: 348 ERRIIQLRYGLYDGHYRTLEEVGREFGITRERIRQIEARVLRKLRHPHYGRGLRGYLE 405 Score = 52.3 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 2/67 (2%) Query: 94 TTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVA--EYPEAITYLLEQYDRV 151 DPVR+Y+RE+G V LLT + EI +A+++E G + P L Sbjct: 106 VDDPVRVYLREIGRVNLLTAQEEIMLAQQVERGEQANERLQNGDYTPVERLQLHRWVQEG 165 Query: 152 EAEEARL 158 +A RL Sbjct: 166 QAARERL 172 >UniRef50_P0A603 RNA polymerase sigma factor rpoD n=66 Tax=Actinobacteria (class) RepID=RPOD_MYCBO Length = 528 Score = 332 bits (852), Expect = 2e-89, Method: Composition-based stats. Identities = 150/299 (50%), Positives = 210/299 (70%) Query: 314 TWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKAR 373 + + +E+ ++++ + L Q + E + + R M Sbjct: 230 AYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGD 289 Query: 374 RAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW 433 RAK ++EANLRLV+S+AK+YT RG+ FLDLIQEGN+GL++AV+KF+Y +GYKFSTYATW Sbjct: 290 RAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATW 349 Query: 434 WIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDK 493 WIRQAITR++ADQARTIRIPVHM+E INKL RI R++LQ++GREPTPEELA+ M + +K Sbjct: 350 WIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEK 409 Query: 494 IRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTA 553 + ++ + A+EPIS++ IGD+ DS LGDFIED+ + +D+ + L+ VL L+ Sbjct: 410 VLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSE 469 Query: 554 REAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 REA V+R+RFG+ TL+E+G+ + VTRERIRQIE+K + KLRHPSRS+VLR +LD Sbjct: 470 REAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 52/104 (50%), Gaps = 11/104 (10%) Query: 57 EEAPDADDLMLAENTADE---DAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTR 113 ++ + + + + + D E+ A + ++E+ + D VR Y++++G V LL Sbjct: 184 DDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNA 243 Query: 114 EGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEAR 157 E E+++AKRIE G + +T L E+ +++ A + R Sbjct: 244 EEEVELAKRIEAG--------LYATQLMTELSERGEKLPAAQRR 279 >UniRef50_B9L102 RNA polymerase sigma factor n=2 Tax=Bacteria RepID=B9L102_THERP Length = 509 Score = 332 bits (852), Expect = 2e-89, Method: Composition-based stats. Identities = 154/287 (53%), Positives = 207/287 (72%), Gaps = 4/287 (1%) Query: 326 WSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLR 385 + E L + + R L + + E + R GEA A++++ EANLR Sbjct: 227 FPEPLQRWCDPLERRLPPIPPLNELGLDRTALIAHWQRLRRDGEA----ARRKLTEANLR 282 Query: 386 LVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIAD 445 LV+SIAK+YT RGL LDLIQEGN+GLM+AVDKF+ +G+KFSTYATWWIRQAITR++AD Sbjct: 283 LVVSIAKRYTGRGLTLLDLIQEGNLGLMRAVDKFQTHKGFKFSTYATWWIRQAITRALAD 342 Query: 446 QARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPI 505 ARTIR+PVH++ET+N+++R++RQ+ QE+GREPT ELA + MP D++R++L+ A++P+ Sbjct: 343 HARTIRLPVHLVETLNRVSRVARQLTQELGREPTTSELAAAVNMPLDRLRELLQAAQDPV 402 Query: 506 SMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGI 565 S+E P+G +E+S LGDF+ED PLD+A LR +LA LT RE +VL MRFG+ Sbjct: 403 SLEAPVGQEEESTLGDFLEDERAVAPLDAAALSLLREQVQSLLATLTERERRVLAMRFGL 462 Query: 566 DMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 + YTLEEVG+ F VTRER+RQIEAKALRKLRHP R+ LR FL+ Sbjct: 463 EDGQTYTLEEVGRAFGVTRERVRQIEAKALRKLRHPQRARALRDFLE 509 Score = 58.5 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 60/147 (40%), Gaps = 20/147 (13%) Query: 11 LLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQV-MEEAPDADDLMLAE 69 ++ + G LT + + D + D E + + G+ V +EEA + D + Sbjct: 34 AILATARLHGRLTREQWLALI--DTLGPDAAETALAELQAEGVPVAIEEALEPDGTSRSW 91 Query: 70 NTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGI-- 127 E + DPVR+Y+ E+G V LLT E E+++ + +E Sbjct: 92 EPEKEADPDLL-------------VEDPVRLYLAEIGRVPLLTAEQEVELGRAVELAEYL 138 Query: 128 NQVQCSVAEYPEAITYLLEQYDRVEAE 154 ++++ + P + LL ++R Sbjct: 139 DELRRCCGDDPLVL--LLAAWERFVTG 163 >UniRef50_A5IMD4 RNA polymerase sigma factor n=24 Tax=Bacteria RepID=A5IMD4_THEP1 Length = 407 Score = 331 bits (850), Expect = 4e-89, Method: Composition-based stats. Identities = 161/283 (56%), Positives = 209/283 (73%), Gaps = 3/283 (1%) Query: 330 LHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVIS 389 +HD S L++I + LT Q +++ RR +G+ K AK++++ +NLRLV+S Sbjct: 121 IHDSSNVRDSIKMYLKEIGKIPLLTPAQERELARRAQMGDKK---AKEKLITSNLRLVVS 177 Query: 390 IAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQART 449 IAK+Y RGL F DLIQEGNIGL+KAV+KF++R+GYKFSTYATWWIRQAITR+IADQART Sbjct: 178 IAKRYMGRGLSFQDLIQEGNIGLLKAVEKFDWRKGYKFSTYATWWIRQAITRAIADQART 237 Query: 450 IRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMET 509 IRIPVHM+ETINKLNR+ R+ Q+ G EP+ EELA+ M P +KI+++L+ AKE IS+E+ Sbjct: 238 IRIPVHMVETINKLNRLRREYYQKHGEEPSIEELAKMMGKPPEKIKEILEAAKETISLES 297 Query: 510 PIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNT 569 PIG+DEDS + DF+ D ++ P A +R VL L+ REA VLRMR+G+ Sbjct: 298 PIGEDEDSSIEDFVADDSIASPKKEAMRMLMREELEKVLKTLSPREAMVLRMRYGLLDGK 357 Query: 570 DYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 TLEEVG+ F+VTRERIRQIE KALRKLRHPSRS+ L+S L Sbjct: 358 PKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKYLKSLLS 400 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 76/159 (47%), Gaps = 7/159 (4%) Query: 6 QSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSD--QIEDIIQMINDMGIQVMEEAPDAD 63 + ++K L++ GK++GY+TY +++ P D D D IE I + + GI ++E + + Sbjct: 40 EKRIKKLISLGKKKGYITYEDIDKAFPPDFEDFDTNLIERIHEELEKHGINIVESESEEE 99 Query: 64 DLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRI 123 ++ + DE E + S + D ++MY++E+G + LLT E ++A+R Sbjct: 100 EMSVP---GDEQELEELLERESPEIHDSSNVRDSIKMYLKEIGKIPLLTPAQERELARRA 156 Query: 124 EDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLI 162 + G + + + + ++ R DLI Sbjct: 157 QMGDKKAKEKLI--TSNLRLVVSIAKRYMGRGLSFQDLI 193 >UniRef50_P77994 RNA polymerase sigma factor rpoD n=6 Tax=Thermotogaceae RepID=RPOD_THEMA Length = 399 Score = 331 bits (849), Expect = 5e-89, Method: Composition-based stats. Identities = 161/283 (56%), Positives = 209/283 (73%), Gaps = 3/283 (1%) Query: 330 LHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVIS 389 +HD S L++I + LT Q +++ RR +G+ K AK++++ +NLRLV+S Sbjct: 113 IHDSSNVRDSIKMYLKEIGKIPLLTPAQERELARRAQMGDKK---AKEKLITSNLRLVVS 169 Query: 390 IAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQART 449 IAK+Y RGL F DLIQEGNIGL+KAV+KF++R+GYKFSTYATWWIRQAITR+IADQART Sbjct: 170 IAKRYMGRGLSFQDLIQEGNIGLLKAVEKFDWRKGYKFSTYATWWIRQAITRAIADQART 229 Query: 450 IRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMET 509 IRIPVHM+ETINKLNR+ R+ Q+ G EP+ EELA+ M P +KI+++L+ AKE IS+E+ Sbjct: 230 IRIPVHMVETINKLNRLRREYYQKHGEEPSIEELAKMMGKPPEKIKEILEAAKETISLES 289 Query: 510 PIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNT 569 PIG+DEDS + DF+ D ++ P A +R VL L+ REA VLRMR+G+ Sbjct: 290 PIGEDEDSSIEDFVADDSIASPKKEAMRMLMREELEKVLKTLSPREAMVLRMRYGLLDGK 349 Query: 570 DYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 TLEEVG+ F+VTRERIRQIE KALRKLRHPSRS+ L+S L Sbjct: 350 PKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKYLKSLLS 392 Score = 97.4 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 75/159 (47%), Gaps = 7/159 (4%) Query: 6 QSQLKLLVTRGKEQGYLTYAEVNDHLPEDI--VDSDQIEDIIQMINDMGIQVMEEAPDAD 63 + ++K L++ GK++GY+TY +++ P D D++ IE I + + GI ++ + Sbjct: 32 ERRIKKLISLGKKKGYITYEDIDKAFPPDFEGFDTNLIERIHEELEKHGINIV---ENEP 88 Query: 64 DLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRI 123 + ++DE E + S + D ++MY++E+G + LLT E ++A+R Sbjct: 89 EEEEISASSDEQELEELLEKESPEIHDSSNVRDSIKMYLKEIGKIPLLTPAQERELARRA 148 Query: 124 EDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLI 162 + G + + + + ++ R DLI Sbjct: 149 QMGDKKAKEKLI--TSNLRLVVSIAKRYMGRGLSFQDLI 185 >UniRef50_A5UQ16 RNA polymerase sigma factor n=3 Tax=Chloroflexi (class) RepID=A5UQ16_ROSS1 Length = 541 Score = 331 bits (848), Expect = 6e-89, Method: Composition-based stats. Identities = 152/255 (59%), Positives = 200/255 (78%) Query: 358 VKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD 417 + R ++ + + A++++ +ANLRLV+S+AKKY RGLQ LDLIQEGN+GL++AV+ Sbjct: 287 RDQLWRDWNLAIDQGKTAREDLTQANLRLVVSVAKKYIGRGLQLLDLIQEGNVGLIRAVE 346 Query: 418 KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE 477 KF+YR+G+KFSTYATWWIRQAITR+IADQARTIRIPVHM+ETIN+L R SR+MLQE+GRE Sbjct: 347 KFDYRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINRLMRESRRMLQELGRE 406 Query: 478 PTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATT 537 PT EEL+ + +P DK+R + K + EP+S+ETP+G +EDS LGDFIED+ + P D+A+ Sbjct: 407 PTDEELSRALGIPVDKVRSIRKTSLEPVSLETPVGQEEDSQLGDFIEDSKVLAPSDAASH 466 Query: 538 ESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRK 597 + LR VL LT RE +VL++RFG++ TLEEVGK+F VTRERIRQIE KALRK Sbjct: 467 QMLREQVEQVLNQLTERERRVLQLRFGLEDGHSRTLEEVGKEFGVTRERIRQIEVKALRK 526 Query: 598 LRHPSRSEVLRSFLD 612 LRHP + LR +L+ Sbjct: 527 LRHPRLGKKLRDYLE 541 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 10/128 (7%) Query: 2 EQNPQS--QLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEA 59 E+ PQ+ L L+ GK++G++T E+ L DSD++ +I Q + GI +E Sbjct: 30 EEEPQTITSLSDLLAIGKQRGFVTEGEIAQLLANSDADSDRLAEIQQALQAAGIATRDE- 88 Query: 60 PDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDI 119 + A+ D + E D VRMY+RE+G V LL EI + Sbjct: 89 -------MITGGAEIDIPFEEEGDFDDLNVEGISVNDTVRMYLREIGRVPLLNARQEILL 141 Query: 120 AKRIEDGI 127 A++IE G Sbjct: 142 AQKIEIGE 149 >UniRef50_D2RM33 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RM33_ACIFE Length = 589 Score = 330 bits (846), Expect = 1e-88, Method: Composition-based stats. Identities = 166/270 (61%), Positives = 210/270 (77%), Gaps = 2/270 (0%) Query: 345 QQIEEETGLTIEQVKDINRRM-SIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLD 403 Q+++EET IE+ K R+ E AKK + EANLRLV+SIAK+Y RG+ FLD Sbjct: 320 QKVDEETQKQIEEGKKRFNRLLHRMEFCGDNAKKCLSEANLRLVVSIAKRYVGRGMLFLD 379 Query: 404 LIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKL 463 LIQEGN+GL+KAV+KF+Y +G+KFSTYATWWIRQAITR+IADQARTIRIPVHM+ETINKL Sbjct: 380 LIQEGNLGLIKAVEKFDYNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKL 439 Query: 464 NRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFI 523 R+SRQ+LQE+GREPTPEE+A+ M + +++R++ KIA+EP+S+ETPIG++EDSHLGDFI Sbjct: 440 VRVSRQLLQELGREPTPEEIAKEMDVSVERVREIQKIAQEPVSLETPIGEEEDSHLGDFI 499 Query: 524 EDTTLELPLDSATTESLRAATHDVL-AGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDV 582 ED P D+A+ L+ VL L+ARE +VL +RFG+ TLEEVG+ F V Sbjct: 500 EDQEAPSPADAASYTLLQEQLGKVLQEHLSARERRVLELRFGLMDGRTRTLEEVGQYFGV 559 Query: 583 TRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 TRERIRQIEAKALRKLR P RS+ L+ FL+ Sbjct: 560 TRERIRQIEAKALRKLRSPKRSKPLKEFLE 589 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 61/265 (23%), Positives = 112/265 (42%), Gaps = 27/265 (10%) Query: 17 KEQGYLTYAEVNDHLPEDI-VDSDQIEDIIQMINDMGIQVMEEAPDADDLMLAENTADED 75 K G LTY E+ D L + V D+++ I + + I+V+++ + ++ T DED Sbjct: 81 KNHGVLTYKEIQDRLQNEDTVSVDEMDAIYSKLAEKNIEVVDDGAEDEE----PETIDED 136 Query: 76 AAEAAAQVLSSVESEIGR-TTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSV 134 + L+++ G DPVRMY++E+G V LL + EI +AKR + G Sbjct: 137 ELKVDESELANLSVPEGVIVDDPVRMYLKEIGRVPLLAGDDEIKLAKRADKGNQAKAILK 196 Query: 135 AEYPE----------AITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSE 184 E PE +I LLE+ + + +E D + + + L + +E Sbjct: 197 GEKPEGEFPPVNKRLSIGKLLEEANELLTQEGIWVDKRSVSLAYRKAQTLTGPDHVLDAE 256 Query: 185 LSQEDLDDDEDEDEEDGDDDSADDDNSI-----DPELAREK-----FAELRAQYVVTRDT 234 QE + D ++++ + ++ I + A EK L+ + V D Sbjct: 257 AYQEMVSDFTMDEKKRLNRLLQENKYKIAHGQKHAQEASEKEEGSSLGTLQELFAVVEDK 316 Query: 235 IKAKGRSHATAQEEILKLSEVFKQF 259 A + Q++I + + F + Sbjct: 317 -AAHQKVDEETQKQIEEGKKRFNRL 340 >UniRef50_C4LJ07 RNA polymerase sigma factor n=115 Tax=Bacteria RepID=C4LJ07_CORK4 Length = 621 Score = 329 bits (844), Expect = 2e-88, Method: Composition-based stats. Identities = 153/299 (51%), Positives = 211/299 (70%) Query: 314 TWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKAR 373 + + +E+ +++ + L ++EE + +R + R Sbjct: 323 AYLKQIGKVALLNAEQEVSLAQRIEAGLYANHKLEELKASNTKLSPAQSRDLRSIAHDGR 382 Query: 374 RAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW 433 +AK ++EANLRLV+S+AK+YT RG+ FLDLIQEGN+GL++AV+KF+Y +GYKFSTYATW Sbjct: 383 KAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATW 442 Query: 434 WIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDK 493 WIRQAITRS+ADQARTIRIPVHM+E INKL RI R++LQ++ REPTPEELA M + EDK Sbjct: 443 WIRQAITRSMADQARTIRIPVHMVEVINKLGRIQRELLQDLSREPTPEELAREMDITEDK 502 Query: 494 IRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTA 553 + ++ + A+EPIS++ IGD+ DS LGDFIED+ + +D+ + L+ DVL LT Sbjct: 503 VLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQDVLKTLTE 562 Query: 554 REAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 REA V+R+RFG+ TL+E+G+ + VTRERIRQIE+K + KLRHPSRS+VLR +LD Sbjct: 563 REAGVVRLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 621 Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 34/53 (64%) Query: 75 DAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGI 127 D E+AA + ++E+ + D VR Y++++G V LL E E+ +A+RIE G+ Sbjct: 298 DEDESAALRQARKDAELTASADSVRAYLKQIGKVALLNAEQEVSLAQRIEAGL 350 >UniRef50_C7GZY7 RNA polymerase sigma factor n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZY7_9FIRM Length = 447 Score = 326 bits (836), Expect = 1e-87, Method: Composition-based stats. Identities = 181/450 (40%), Positives = 258/450 (57%), Gaps = 16/450 (3%) Query: 167 DPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRA 226 D N +D+ T E +++ D D D K +L+ Sbjct: 10 DENPGQDIDVEITEDLEAELAELAATLAEDESVDIDLDGDLGVAMFKKVDLALKSGKLKT 69 Query: 227 QYVVT-RDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQER 285 + +I + ++ + E+ K+ + K+F+ ++ +R Sbjct: 70 EEGKLPIKSIYTLCDEIPFDENDVECMYELLKENGIGIKEFEAAEENIAKNGERADKV-V 128 Query: 286 LIMKLCVEQCKM--PKKNFITLFTGNETSDTWFNAAIAMNKPWS-EKLHDVSEEVHRALQ 342 I ++ + P K ++ +A + K +++ E + R + Sbjct: 129 DIRRIVRTSIGIDDPVKMYLKEIGQVPLLTREEEKILATQVKHALAKQNEIRERLERLKE 188 Query: 343 KLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL 402 ++E L E +D N+ A ++ EANLRLV+SIAK + +RG+ FL Sbjct: 189 GSATYKKEMKLLDEYKQDYNK-----------AMHQLCEANLRLVVSIAKNHKDRGMHFL 237 Query: 403 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 462 DLIQEGN+GLMKAVDKF+ R +KFSTYATWWIRQAITR+IADQARTIRIPVHM+ETI+K Sbjct: 238 DLIQEGNLGLMKAVDKFDVDRNFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETIHK 297 Query: 463 LNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDF 522 L RISR +LQE+GREP PEE+A+ M + +K+R +L+I++EP+S+E PIG++EDSHLGDF Sbjct: 298 LTRISRTLLQELGREPKPEEIAKEMDITTEKVRDILRISQEPVSLEKPIGEEEDSHLGDF 357 Query: 523 IEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDV 582 I DT + PLD A + LR +VL L RE VL++RFG+ TLEEVGKQFDV Sbjct: 358 IPDTEVPSPLDVAFSSMLRDELLEVLNTLGERERNVLKLRFGLVDGKQRTLEEVGKQFDV 417 Query: 583 TRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 TRERIRQIE+KA+RKL+HP+ S+ LR ++D Sbjct: 418 TRERIRQIESKAIRKLKHPNMSKKLRDYID 447 Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 58/139 (41%), Gaps = 9/139 (6%) Query: 18 EQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLAENTADEDAA 77 E+G L + E D + +E + +++ + GI + E +++ AD+ Sbjct: 70 EEGKLPIKSIYTLCDEIPFDENDVECMYELLKENGIGIKEFEAAEENIAKNGERADK--- 126 Query: 78 EAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA---KRIEDGINQVQCSV 134 + + DPV+MY++E+G V LLTRE E +A K N+++ + Sbjct: 127 ---VVDIRRIVRTSIGIDDPVKMYLKEIGQVPLLTREEEKILATQVKHALAKQNEIRERL 183 Query: 135 AEYPEAITYLLEQYDRVEA 153 E ++ ++ Sbjct: 184 ERLKEGSATYKKEMKLLDE 202 >UniRef50_D1CB24 RNA polymerase sigma factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CB24_THET1 Length = 463 Score = 323 bits (828), Expect = 1e-86, Method: Composition-based stats. Identities = 133/251 (52%), Positives = 180/251 (71%) Query: 363 RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR 422 + + AK +++EAN RLV+SIAKKY RGL LDLIQEGNIGLM+A DKF+Y Sbjct: 213 NHWNKVRKEGEGAKCKLIEANTRLVVSIAKKYLGRGLSLLDLIQEGNIGLMRAADKFDYT 272 Query: 423 RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEE 482 RGYKFSTYATWWIRQA+TR+IADQ+RTIR+PVH+ ET++K+++ S+++ QE+G EPT E+ Sbjct: 273 RGYKFSTYATWWIRQAVTRAIADQSRTIRLPVHVCETVSKIHKTSQKLQQELGHEPTIEQ 332 Query: 483 LAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRA 542 L+ + MP K+ ++ + +K P+S+E PIG+D DS LGDF+ED + P+ A + LR Sbjct: 333 LSSELGMPMKKVVQIQQASKFPVSLEAPIGEDGDSMLGDFLEDVHVLNPVQKAANDILRE 392 Query: 543 ATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 602 + VL L +E KVL +RFG+ TLEEVG +F +TRER+RQIE ALR+LR Sbjct: 393 QINSVLQNLPPKERKVLELRFGLVDGKCRTLEEVGNEFAITRERVRQIECTALRRLRENH 452 Query: 603 RSEVLRSFLDD 613 + LR FL+D Sbjct: 453 LIKQLRDFLED 463 Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 33/68 (48%) Query: 61 DADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA 120 D + T D D + L +E +PV+MY+RE+G V LLT E E+ +A Sbjct: 35 DIAIEFSDDATNDVDQEGSDLSDLEHIEGYADDLDEPVQMYLREIGKVPLLTAEQEVILA 94 Query: 121 KRIEDGIN 128 ++IE Sbjct: 95 RKIELSRR 102 >UniRef50_P18182 RNA polymerase principal sigma factor hrdA n=6 Tax=Actinomycetales RepID=HRDA_STRCO Length = 396 Score = 322 bits (826), Expect = 2e-86, Method: Composition-based stats. Identities = 137/281 (48%), Positives = 201/281 (71%), Gaps = 4/281 (1%) Query: 332 DVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIA 391 D++ V L +++ GL D++R + +G R AK+ ++EANLRLV+S+A Sbjct: 120 DLARRVEAGLFAEEKLRCSPGLDDRLALDLDRLVVLG----RLAKRRLIEANLRLVVSVA 175 Query: 392 KKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIR 451 K+Y RGL LDL+QEGN+GL++AV+KF+Y RGYKFSTYATWWIRQA++R++ADQARTIR Sbjct: 176 KRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIR 235 Query: 452 IPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPI 511 +PVH++E IN++ R+ R+MLQE G EPTP+E+A + + +++ +VL++A+EP+S+ P+ Sbjct: 236 VPVHVVELINRVVRVQRRMLQERGCEPTPQEVAAHLDLAPERVGEVLRLAQEPVSLHAPV 295 Query: 512 GDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDY 571 G+++D LGD IED P++SA LR VL+ L RE KV+++R+G+ Sbjct: 296 GEEDDVALGDLIEDGDAASPVESAAFLLLRQHLEAVLSTLGERERKVVQLRYGLADGRPR 355 Query: 572 TLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 TLEE+G+ F VTRERIRQIE+K L KLR + ++ LR +LD Sbjct: 356 TLEEIGRLFGVTRERIRQIESKTLSKLRDHAYADQLRGYLD 396 Score = 51.5 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 36/79 (45%) Query: 49 NDMGIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTV 108 + G+ + A L A D E + G ++D R Y+RE+G + Sbjct: 51 AERGVLLAMPAQPGAGAALPHPGAPVDVPEHPEPPPPTRTESGGPSSDLFRQYLREIGRI 110 Query: 109 ELLTREGEIDIAKRIEDGI 127 LL+ E+D+A+R+E G+ Sbjct: 111 PLLSAAEEVDLARRVEAGL 129 >UniRef50_C7NC70 RNA polymerase sigma factor n=6 Tax=Bacteria RepID=C7NC70_LEPBD Length = 392 Score = 321 bits (824), Expect = 3e-86, Method: Composition-based stats. Identities = 170/396 (42%), Positives = 249/396 (62%), Gaps = 15/396 (3%) Query: 224 LRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRV----MMDR 279 + + ++++ + + + ++ + L+ + ++D Sbjct: 1 MSDKKQNLKNSLANFIKQAREQKVVSYEEINSVLSIGFSTEKIEQLIKKLTDDGVQIVDT 60 Query: 280 VRTQERLIM--KLCVEQCKMPKKNFITL---FTGNETSDTWFNAAIAMNKPWSEKLHDVS 334 + +E L+ + + KM +F F +E D+ + + + + DV Sbjct: 61 KKEKEDLLKVPETLADIEKMEISDFEDTHDEFVESEIDDSEVDKLLQTDLLKMAESMDVD 120 Query: 335 EEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKY 394 E + L+++ + L+ E+ D +R+ GE + AK++++E+NLRLV+SIAKK+ Sbjct: 121 EPIKMYLREI---GQIPLLSYEEEIDYAQRVLDGEEE---AKQKLIESNLRLVVSIAKKH 174 Query: 395 TNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPV 454 TNRGL+ LDLIQEGN+GLMKAV+KFEY +G+KFSTYATWWIRQAITR+IADQ RTIRIPV Sbjct: 175 TNRGLKMLDLIQEGNMGLMKAVEKFEYEKGFKFSTYATWWIRQAITRAIADQGRTIRIPV 234 Query: 455 HMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDD 514 HMIETINK+ + SR +LQE G+EPT EELAE++ +P +K++ +L++ ++PIS+ETP+G + Sbjct: 235 HMIETINKIKKESRIILQETGKEPTAEELAEKLELPVEKVKSILEMNQDPISLETPVGSE 294 Query: 515 EDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLE 574 EDS LGDF+ED P D+ T L+ +VL L RE VLR R+G+D + TLE Sbjct: 295 EDSELGDFVEDDKFANPYDATTRILLKEQLDEVLKTLNEREEMVLRYRYGLDDGSQKTLE 354 Query: 575 EVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSF 610 EVGK F+VTRERIRQIE KALRKLRHPSR + L + Sbjct: 355 EVGKIFNVTRERIRQIEVKALRKLRHPSRRKKLEDY 390 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 41/184 (22%), Positives = 86/184 (46%), Gaps = 26/184 (14%) Query: 2 EQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPD 61 +QN ++ L + + +EQ ++Y E+N L +++IE +I+ + D G+Q+++ + Sbjct: 5 KQNLKNSLANFIKQAREQKVVSYEEINSVLSIGF-STEKIEQLIKKLTDDGVQIVDTKKE 63 Query: 62 ADDLMLAENT---------ADEDAAEAAAQVLSSVESEIGR--------------TTDPV 98 +DL+ T +D + +SE+ + +P+ Sbjct: 64 KEDLLKVPETLADIEKMEISDFEDTHDEFVESEIDDSEVDKLLQTDLLKMAESMDVDEPI 123 Query: 99 RMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARL 158 +MY+RE+G + LL+ E EID A+R+ DG + + + E + ++ + ++ Sbjct: 124 KMYLREIGQIPLLSYEEEIDYAQRVLDGEEEAKQKLIES--NLRLVVSIAKKHTNRGLKM 181 Query: 159 SDLI 162 DLI Sbjct: 182 LDLI 185 >UniRef50_C8NZE6 RNA polymerase sigma factor n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZE6_ERYRH Length = 459 Score = 320 bits (821), Expect = 7e-86, Method: Composition-based stats. Identities = 155/258 (60%), Positives = 197/258 (76%), Gaps = 1/258 (0%) Query: 356 EQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKA 415 E+ A++ ++ ANLRLV+SIAKKY RG+ FLDLIQEGN+GL+KA Sbjct: 200 EENLAFLTNWVATYYDGLEARRILISANLRLVVSIAKKYVGRGMLFLDLIQEGNMGLVKA 259 Query: 416 VDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMG 475 V+KF+Y +G+KFSTYATWWIRQAITR+IADQARTIRIPVHM+ETINKL RI R ++Q +G Sbjct: 260 VEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLTRIQRSLVQTLG 319 Query: 476 REPTPEELAERM-LMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDS 534 REPT EE+A M + +K+R++ KIA +P+S+ETPIG+++DSHLGDFIED P + Sbjct: 320 REPTAEEIAAEMENITPEKVREIQKIALDPVSLETPIGEEDDSHLGDFIEDKDALSPDEY 379 Query: 535 ATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKA 594 A + L+ VL GLT RE KVLR+RFG++ TLEEVGK+F+VTRERIRQIEAKA Sbjct: 380 ANNQLLKEEIKMVLEGLTEREEKVLRLRFGLEDGRTRTLEEVGKEFNVTRERIRQIEAKA 439 Query: 595 LRKLRHPSRSEVLRSFLD 612 LRKL+HP+RS+ LR F+D Sbjct: 440 LRKLKHPTRSKRLRDFVD 457 Score = 65.4 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 80/177 (45%), Gaps = 23/177 (12%) Query: 3 QNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGI--------- 53 + + + + + +++ L +V + ++ D E++ + + GI Sbjct: 7 KTLEEVKESFLKQYEKKRVLLNDDVEKAIDHLNLNDDDSEELFEWFTEKGIILSDDEDDI 66 Query: 54 ----QVMEEAPDADDLMLAENTADEDAAEAAAQ--VLSSVESEIG-----RTTDPVRMYM 102 + PD DD +++ +++ + + LSS E+E+ R DPV+MY+ Sbjct: 67 DEEVMLEAGEPDVDDDFISDEAEEDEIFDDSLNKVDLSSYENELTSANMVRINDPVKMYL 126 Query: 103 REMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLL---EQYDRVEAEEA 156 +E+G V LL + E +IA+R+++G + + +Y E + + E +R+ + Sbjct: 127 KEIGRVNLLDAKDEPEIARRLQEGEQAKEFIINKYKEIVDPAITDEELAERLTENQI 183 >UniRef50_P43344 RNA polymerase sigma factor rpoD (Fragment) n=31 Tax=Bacteria RepID=RPOD_SERMA Length = 215 Score = 317 bits (813), Expect = 7e-85, Method: Composition-based stats. Identities = 211/215 (98%), Positives = 214/215 (99%) Query: 399 LQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIE 458 LQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIE Sbjct: 1 LQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIE 60 Query: 459 TINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSH 518 TINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSH Sbjct: 61 TINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSH 120 Query: 519 LGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGK 578 LGDFIEDTTLELPLDSAT+ESLR+ATHDVLAGLTARE KVLRMRFGIDMNTD+TLEEVGK Sbjct: 121 LGDFIEDTTLELPLDSATSESLRSATHDVLAGLTAREXKVLRMRFGIDMNTDHTLEEVGK 180 Query: 579 QFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 QFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD Sbjct: 181 QFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 215 >UniRef50_Q0RDY7 RNA polymerase sigma factor n=5 Tax=Actinomycetales RepID=Q0RDY7_FRAAA Length = 373 Score = 316 bits (810), Expect = 2e-84, Method: Composition-based stats. Identities = 139/281 (49%), Positives = 201/281 (71%), Gaps = 4/281 (1%) Query: 332 DVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIA 391 ++S+ V L ++E + L + +D+ + G A AK+++V ANLRLV+S+A Sbjct: 97 ELSKRVEAGLFAEHKLESDPDLPADLRRDLGLLVKDGHA----AKQQLVSANLRLVVSVA 152 Query: 392 KKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIR 451 KKY+ RG+ LDL+QEGN+GL++AV+KF+Y +GYKFSTYATWWIRQAI R++ADQARTIR Sbjct: 153 KKYSGRGMTLLDLVQEGNLGLIRAVEKFDYAKGYKFSTYATWWIRQAIGRALADQARTIR 212 Query: 452 IPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPI 511 IPVH++E INK+ R+ RQ++ +GREPT EELA + MP +++ ++ + A++ +S+ET + Sbjct: 213 IPVHVVEQINKITRLQRQLVSTLGREPTDEELALELDMPIEQVVELRRYAQDTVSLETSV 272 Query: 512 GDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDY 571 GDD DS LGDFIED+ P D+A+ +++ +VL GL RE +V+R+RFG+ + Sbjct: 273 GDDGDSVLGDFIEDSDATSPADAASYGAMQDEIENVLGGLNPREREVMRLRFGLADGKQH 332 Query: 572 TLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 TL EVG + +TRERIRQIE LR+LR P+ + LR FLD Sbjct: 333 TLAEVGNRLGLTRERIRQIERDTLRELRKPAVAGRLREFLD 373 Score = 69.6 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 16/121 (13%) Query: 7 SQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLM 66 S + ++ RG+E G ++ +E+ D L + + + +I ++ G++++EE DD+ Sbjct: 2 SAVAEVIARGREAGEISRSELRDALESADIGLELLPALIAKLSAAGVELLEEEETTDDVT 61 Query: 67 LAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDG 126 A + E A T D VRMY+RE+G V LL E++++KR+E G Sbjct: 62 AATRSTAEHAG----------------TADLVRMYLREIGKVPLLNAAQEVELSKRVEAG 105 Query: 127 I 127 + Sbjct: 106 L 106 >UniRef50_A5UPS4 RNA polymerase sigma factor n=4 Tax=Chloroflexaceae RepID=A5UPS4_ROSS1 Length = 402 Score = 316 bits (809), Expect = 2e-84, Method: Composition-based stats. Identities = 133/280 (47%), Positives = 196/280 (70%), Gaps = 4/280 (1%) Query: 333 VSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAK 392 +++ + + + +E E + ++ ++++ G A++ +++ANLRLV+SIAK Sbjct: 127 LAKAMEAGHRARRALEREEYSSWQERVMYEQQVAQG----NEARQHLIQANLRLVVSIAK 182 Query: 393 KYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRI 452 KYT+ GL +DL+QEGNIGLM+AV+KF+Y +G+KFSTYATWWIRQAITR+IADQ+RTIR+ Sbjct: 183 KYTSYGLTMMDLVQEGNIGLMRAVEKFDYTKGHKFSTYATWWIRQAITRAIADQSRTIRL 242 Query: 453 PVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIG 512 PVHM E I+++ R S ++ Q M REPTPEE+A+ M + K+R+ L+ + P+S+E P+G Sbjct: 243 PVHMGEAISQVKRTSHKLQQTMQREPTPEEIADAMGISSTKVRRTLEASMHPLSLEMPVG 302 Query: 513 DDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYT 572 + + +GDFIED + P ++A LR +VL L RE K++++R+G+ T Sbjct: 303 QEGEGRMGDFIEDDRISTPAEAAAASMLREQLEEVLQKLPERERKIIQLRYGLKDGRYRT 362 Query: 573 LEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 LEEVG +F +TRERIRQIEA ALRKLRHP + LR +LD Sbjct: 363 LEEVGMEFGITRERIRQIEAVALRKLRHPHLGKKLRGYLD 402 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 18/158 (11%) Query: 1 MEQNPQS---QLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVME 57 +EQ Q+ L+ L+ G+ +G+LTY E+ + LP+ ++ + + GI+V+E Sbjct: 15 VEQTQQAWAQTLEYLLEIGRTRGFLTYNEILEALPQPEHHIADVDQLYASLQAEGIRVVE 74 Query: 58 EAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEI 117 D D + +D A L+ V DPVRMY++E+G V LL+ E E+ Sbjct: 75 TPLDIHD----NGSTGDDELLADMPDLTDVA-----LDDPVRMYLQEIGQVPLLSAEQEV 125 Query: 118 DIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEE 155 +AK +E G A +RV E+ Sbjct: 126 MLAKAMEAGHR------ARRALEREEYSSWQERVMYEQ 157 >UniRef50_B8GCU9 RNA polymerase sigma factor n=5 Tax=Bacteria RepID=B8GCU9_CHLAD Length = 398 Score = 315 bits (808), Expect = 2e-84, Method: Composition-based stats. Identities = 128/283 (45%), Positives = 190/283 (67%) Query: 330 LHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVIS 389 L E+ + + Q E T+ ++ + + A+++M ANLRLV+S Sbjct: 114 LTAEQEKQLAQMIERGQAAERKLATLPPDSPEAAKLRRIKEQGDEARQKMAAANLRLVVS 173 Query: 390 IAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQART 449 IAK+Y +RGL LDLIQEG++GL++A++KF++ +GYKFSTYATWWI+QA++R++ADQ+R Sbjct: 174 IAKRYRDRGLPLLDLIQEGSLGLLRAIEKFDHTKGYKFSTYATWWIKQALSRALADQSRL 233 Query: 450 IRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMET 509 +R+PVH+ ET+N++ RQ+ Q +GREPT ELA + M E+K+R++ + A++P+S+ T Sbjct: 234 VRLPVHLGETLNRIQSARRQLTQSLGREPTDTELANHLGMSEEKLRELRRTAQDPVSLAT 293 Query: 510 PIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNT 569 P+G++ DS L DFI D D+A + LR L L+ RE +VL +R+G+ Sbjct: 294 PVGEEADSTLADFIPDPHALDADDAAASGMLRQQIAAALDQLSERERRVLELRYGLADGQ 353 Query: 570 DYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 TLEEVGK F VTRER+RQIE KALRKLRHP ++L+ +LD Sbjct: 354 PRTLEEVGKAFGVTRERVRQIEVKALRKLRHPRLGKLLKDYLD 396 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 70/151 (46%), Gaps = 8/151 (5%) Query: 7 SQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLM 66 + ++ L+ +G++QG++T+ ++ +P +QI+ I + + G+ V + Sbjct: 18 ADVQALIAQGRQQGFVTFEDIQRLVPNLEESVEQIDSIYAALAEAGVPVHDGDE------ 71 Query: 67 LAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDG 126 + DE + + E +D VR+Y+RE+G V LLT E E +A+ IE G Sbjct: 72 --PVSGDESLTPSVTDLDLDDELSDALLSDSVRLYLREIGQVPLLTAEQEKQLAQMIERG 129 Query: 127 INQVQCSVAEYPEAITYLLEQYDRVEAEEAR 157 + P++ + + + +EAR Sbjct: 130 QAAERKLATLPPDSPEAAKLRRIKEQGDEAR 160 >UniRef50_D2R6R0 RNA polymerase, sigma 70 subunit, RpoD subfamily n=7 Tax=Planctomycetaceae RepID=D2R6R0_9PLAN Length = 544 Score = 315 bits (807), Expect = 4e-84, Method: Composition-based stats. Identities = 188/604 (31%), Positives = 282/604 (46%), Gaps = 71/604 (11%) Query: 8 QLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLML 67 +LK LV +G QGYLTY ED+ + D + D+L++ Sbjct: 7 ELKELVAKGNTQGYLTY-----------------EDVNNYLPDQDVN----PEKLDNLLV 45 Query: 68 AENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGI 127 A A + + + R +D V L E + + I + Sbjct: 46 ALEHAGIELVDQPPVEPGKPRLFVPRESD----------AVPLKPEESKKLNSDPIRLYL 95 Query: 128 NQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQ 187 +Q+ + + ++E R I T + G Sbjct: 96 SQMAEIPL---LSRQEEISLAKKIEVTRKRFRRTILSCDYAMRATVQTLTQVYAGELPFD 152 Query: 188 EDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQE 247 + E + N E + + + + + + + +S T Sbjct: 153 RTIKVSLTEQLTKEQILARMPHNLRSIEQLLGRNKKAFGKLIRPSTSREERQQSRRTFLR 212 Query: 248 EILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFT 307 K ++ ++ L ++ L+ M + R+ + + E Sbjct: 213 GRGKCLQLVEELSLRTRRVQPLMKEMEQLASRMERVRARLKAIKQEDG------------ 260 Query: 308 GNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSI 367 E ++L + ET + ++ M Sbjct: 261 -------------------------RRFERRSLRRELHHLMMETLESPRSLRARCVAMQR 295 Query: 368 GEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKF 427 + AK+++ NLRLV+SIAKKY NRGL FLDLIQEGN GLM+AVDK+EYRRG+KF Sbjct: 296 QYIEYEAAKRQLSSGNLRLVVSIAKKYRNRGLSFLDLIQEGNTGLMRAVDKYEYRRGFKF 355 Query: 428 STYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERM 487 STYATWWIRQAITR+IADQARTIRIPVHMI+ ++KL + +++LQE+GREPT EE+ + Sbjct: 356 STYATWWIRQAITRAIADQARTIRIPVHMIDVLSKLRNVQKKLLQELGREPTTEEVTALV 415 Query: 488 LMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDV 547 +P +++++VL I + P+S++ P+GD EDS G+FIEDT + P+ AT LR + Sbjct: 416 DLPLEEVKRVLDIGRHPVSLDRPVGDSEDSSFGEFIEDTASDNPVLCATNGILRERIDGL 475 Query: 548 LAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVL 607 L LT RE +++R+R+G+ YTLEEVG+ F VTRER+RQIEAKA+RKL+HP RS+ L Sbjct: 476 LKTLTWREREIIRLRYGLCDGYTYTLEEVGRIFKVTRERVRQIEAKAVRKLQHPVRSKQL 535 Query: 608 RSFL 611 FL Sbjct: 536 EGFL 539 >UniRef50_Q3AWQ6 RNA polymerase sigma factor n=5 Tax=Chroococcales RepID=Q3AWQ6_SYNS9 Length = 451 Score = 315 bits (806), Expect = 4e-84, Method: Composition-based stats. Identities = 148/282 (52%), Positives = 201/282 (71%), Gaps = 5/282 (1%) Query: 330 LHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVIS 389 L +++ + + +E L + RR+ +G AK++MV++NLRLV+S Sbjct: 174 LEELAAQFESDNGREPDKKEWAALVEMPLIRFRRRLMLGRR----AKEKMVQSNLRLVVS 229 Query: 390 IAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQART 449 IAKKY NRGL F DLIQEG++GL++A +KF++ +GYKFSTYATWWIRQAITR+IADQ+RT Sbjct: 230 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 289 Query: 450 IRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMET 509 IR+PVH+ ETI+++ + ++ + QE GR+PT EE+AE M M +K+R + K A+ PIS+ET Sbjct: 290 IRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLET 349 Query: 510 PIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNT 569 PIG +EDS LGDFIE +E P LR VLA L+ RE VLR+R+G+D Sbjct: 350 PIGKEEDSRLGDFIE-ADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGR 408 Query: 570 DYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 TLEE+G+ FDVTRERIRQIEAKALRKLRHP+R+ VL+ ++ Sbjct: 409 MKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 450 >UniRef50_P27785 RNA polymerase sigma factor rpoD n=102 Tax=Bacteria RepID=RPOD_STRAU Length = 317 Score = 313 bits (803), Expect = 9e-84, Method: Composition-based stats. Identities = 130/277 (46%), Positives = 193/277 (69%) Query: 336 EVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYT 395 ++ R ++ EE+ G + + + R AK+ ++E+NLRLV+S+AK+Y Sbjct: 41 DLARRVEAGLFAEEKLGGAADLDSQLAVDLDRLVVMGRMAKRRLIESNLRLVVSVAKRYV 100 Query: 396 NRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVH 455 RGL LDL+QEGN+GL++AV+KF+Y RGYKFSTYATWWIRQA++R++ADQARTIR+PVH Sbjct: 101 GRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVH 160 Query: 456 MIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDE 515 ++E IN++ R+ R+MLQE G EPT EE+A + + +++ +VL++A+EP+S+ P+G+++ Sbjct: 161 VVELINRVVRVQRRMLQERGYEPTAEEVAVHLELTPERVLEVLRLAQEPVSLHAPVGEED 220 Query: 516 DSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEE 575 D LGD IED P++SA VL+ L RE KV+++R+G+ TLEE Sbjct: 221 DVALGDLIEDGDAASPVESAAFFLRCEHLEAVLSTLGERERKVVQLRYGLADGRPRTLEE 280 Query: 576 VGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 +G+ F VTRERIRQIE+K L KLR + ++ LR +LD Sbjct: 281 IGRIFGVTRERIRQIESKTLNKLRDHAFADQLRGYLD 317 Score = 47.7 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 27/49 (55%) Query: 79 AAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGI 127 + + G + D R Y+RE+G + LLT E+D+A+R+E G+ Sbjct: 2 PPPRTRGAESGGAGPSADLFRQYLREIGRIPLLTAAEEVDLARRVEAGL 50 >UniRef50_A8S2D4 RNA polymerase sigma factor n=2 Tax=Clostridium RepID=A8S2D4_9CLOT Length = 406 Score = 311 bits (797), Expect = 4e-83, Method: Composition-based stats. Identities = 141/284 (49%), Positives = 204/284 (71%), Gaps = 3/284 (1%) Query: 328 EKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLV 387 E+L + + L++I LT E+ D+ RR S G+ + A +++VEANLRLV Sbjct: 125 ERLLEGVSTADPIREYLKEIGSIALLTPEEESDLARRKSEGDVE---AGRKLVEANLRLV 181 Query: 388 ISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA 447 +SIAK+YT RG+ FLDL+QEGN+GLMKAV+KF+Y +GY+ STYATWW++Q+ITRS+ADQ+ Sbjct: 182 VSIAKRYTGRGMSFLDLVQEGNLGLMKAVEKFDYAKGYRLSTYATWWVKQSITRSLADQS 241 Query: 448 RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISM 507 RTIR+PVHM+E +NK+ R R + ++GREP+ EE+AE + M ++ ++++ + + +S+ Sbjct: 242 RTIRLPVHMVEAVNKIRRAQRSLSVKLGREPSMEEVAEEVNMSGKRVAELIQASGDTVSL 301 Query: 508 ETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDM 567 ETP+GD+E S+LGDF+ D D A + LR +L GL RE +V+ +RFG++ Sbjct: 302 ETPVGDEEGSNLGDFVADDANASTEDKAESFLLREEIDSMLQGLNPREREVIILRFGLET 361 Query: 568 NTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 TLEEVGK+F+VTRERIRQIE ALRKLR+PS+S+ +R FL Sbjct: 362 GHPLTLEEVGKRFNVTRERIRQIETAALRKLRNPSKSKKIRDFL 405 Score = 52.7 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 72/197 (36%), Gaps = 40/197 (20%) Query: 4 NPQSQLKLLV-TRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVM------ 56 +L+ LV ++G L +V DH + + +++ED+ + G+ + Sbjct: 5 ELSKRLEQLVGEAAAQEGRLEMTQVLDHFRDVQMTPEEMEDVYLKLERKGVHIQAPEEPE 64 Query: 57 ------EEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGR----------------- 93 + D D + + A E+ ++ + G Sbjct: 65 EELPEGDFLLDDDAELDQPSLAKEEFRWGRDRLDPDEMLDGGSMVSGGDEEEEEYDGYGQ 124 Query: 94 --------TTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLL 145 T DP+R Y++E+G++ LLT E E D+A+R +G + + E + ++ Sbjct: 125 ERLLEGVSTADPIREYLKEIGSIALLTPEEESDLARRKSEGDVEAGRKLVEA--NLRLVV 182 Query: 146 EQYDRVEAEEARLSDLI 162 R DL+ Sbjct: 183 SIAKRYTGRGMSFLDLV 199 >UniRef50_Q2J784 RNA polymerase sigma factor n=6 Tax=Actinomycetales RepID=Q2J784_FRASC Length = 422 Score = 309 bits (792), Expect = 2e-82, Method: Composition-based stats. Identities = 139/281 (49%), Positives = 201/281 (71%), Gaps = 4/281 (1%) Query: 332 DVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIA 391 ++S+ V L ++E L + +D+ + G A AK+++V ANLRLV+S+A Sbjct: 146 ELSKRVEAGLFAEYKLESVPDLPADLRRDLGLLVKDGHA----AKQQLVSANLRLVVSVA 201 Query: 392 KKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIR 451 KKY+ RG+ LDL+QEGN+GL++AV+KF+Y +GYKFSTYATWWIRQAI R++ADQARTIR Sbjct: 202 KKYSGRGMTLLDLVQEGNLGLIRAVEKFDYAKGYKFSTYATWWIRQAIGRALADQARTIR 261 Query: 452 IPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPI 511 IPVH++E INK+ R+ RQ++ +GREPT EELA + MP +++ ++ + A++ +S+ET + Sbjct: 262 IPVHVVEQINKITRLQRQLVSTLGREPTDEELALELDMPIEQVVELRRYAQDTVSLETSV 321 Query: 512 GDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDY 571 GDD DS LGDFIED+ P D+A+ +++ +VL GL+ RE +V+R+RFG+ + Sbjct: 322 GDDGDSVLGDFIEDSDATSPADAASYGAMQDEIENVLGGLSPREREVMRLRFGLADGKQH 381 Query: 572 TLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 TL EVG + +TRERIRQIE LR+LR P+ + LR FLD Sbjct: 382 TLAEVGNRLGLTRERIRQIERDTLRELRKPAVAGRLREFLD 422 Score = 82.0 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 16/121 (13%) Query: 7 SQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLM 66 S + ++ RG+E G ++ +E+ D L + + + +I +N +GI++++E +DD Sbjct: 51 SAVAEVIARGREAGEISRSELRDVLESADIGIELLPALIARLNAVGIELLDEEEASDDAT 110 Query: 67 LAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDG 126 A + E A T D VRMY+RE+G V LL E++++KR+E G Sbjct: 111 AASRSTAEHAG----------------TADLVRMYLREIGKVPLLNAAQEVELSKRVEAG 154 Query: 127 I 127 + Sbjct: 155 L 155 >UniRef50_B4DC14 RNA polymerase sigma factor n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DC14_9BACT Length = 479 Score = 309 bits (791), Expect = 3e-82, Method: Composition-based stats. Identities = 170/458 (37%), Positives = 235/458 (51%), Gaps = 18/458 (3%) Query: 170 AEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYV 229 E P ED D + L+RE+ A++ + Sbjct: 19 TESSAEPDRISRRQPEQGEDEIRRPSTSGGMEDHLRLYLRQTPHRLLSREQEADICRRVE 78 Query: 230 VTRDTIKAKG-------RSHATAQEEILKLSEVFKQFRLVPK--QFDYLVNSMRVMMDRV 280 + I+ +H +L E K + + + + + R Sbjct: 79 AAEEQIRQHLYRFGSTAHAHLQLVRRLLAREERLDHVVATAKLERRERYLGVLAKLAARF 138 Query: 281 RT----QERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEE 336 ++ + F F E +EE Sbjct: 139 EKTATLCDQHYADYLTHRGHPEAAQFAQAFLQVRQKLAALYPKFFFKMSAFEASAKTAEE 198 Query: 337 VHRA-----LQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIA 391 V R Q ++ ++ E L ++ + M + KA A+ EMVE NLRLV+SIA Sbjct: 199 VCRTTTVTDEQVMRNLQAEMWLNPSELNVELQEMKRWQRKALEARTEMVECNLRLVVSIA 258 Query: 392 KKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIR 451 ++Y NRG FLDLIQEGNIGLM+AV++FEYRRGYKF+T ATWWIRQAI+RSIA+QARTIR Sbjct: 259 REYQNRGQPFLDLIQEGNIGLMRAVERFEYRRGYKFATCATWWIRQAISRSIANQARTIR 318 Query: 452 IPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPI 511 IP HMI+ + KL R+ RQM QE GR+PT E+LA + +P ++R +LK+A+EPIS+ TP+ Sbjct: 319 IPTHMIDLLAKLIRVQRQMTQESGRDPTAEDLAGELHLPLRRVRALLKMAEEPISIHTPV 378 Query: 512 GDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDY 571 G++ S LGDFIED ++E P A LR + VL LT RE ++L RFG+ + Sbjct: 379 GEEGGSRLGDFIEDHSVEDPSKQAAVAMLREKINAVLHTLTEREREILEQRFGLIDGRER 438 Query: 572 TLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRS 609 TLEE+G+ F VTRER+RQIEAKALRK+RHP R L+ Sbjct: 439 TLEEIGRHFKVTRERVRQIEAKALRKMRHPERRRQLQG 476 Score = 47.7 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 70/222 (31%), Gaps = 6/222 (2%) Query: 63 DDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKR 122 AE + S G D +R+Y+R+ LL+RE E DI +R Sbjct: 18 KTESSAEPDRISRRQPEQGEDEIRRPSTSGGMEDHLRLYLRQTP-HRLLSREQEADICRR 76 Query: 123 IEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVG 182 +E Q++ + + L+ R+ A E RL ++ E L A Sbjct: 77 VEAAEEQIRQHLYRFGSTAHAHLQLVRRLLAREERLDHVVATAKLERRERYLGVLAKLAA 136 Query: 183 SELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSH 242 L D D + R+K A L ++ +A ++ Sbjct: 137 RFEKTATLCDQHYADYLTHRGHPEAAQFAQAFLQVRQKLAALYPKFFFKMSAFEASAKTA 196 Query: 243 AT-----AQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDR 279 + + + + L P + + + M+ + Sbjct: 197 EEVCRTTTVTDEQVMRNLQAEMWLNPSELNVELQEMKRWQRK 238 >UniRef50_D1VBD5 RNA polymerase sigma factor n=1 Tax=Frankia sp. EuI1c RepID=D1VBD5_9ACTO Length = 424 Score = 308 bits (789), Expect = 4e-82, Method: Composition-based stats. Identities = 152/398 (38%), Positives = 230/398 (57%), Gaps = 22/398 (5%) Query: 222 AELRAQYVVTRDTIKAKGRSHATAQ--EEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDR 279 ++ V + A+GR E L L+P LV + +++ Sbjct: 42 EDIDELDVSAVAELIARGRDSGEVSRSELREALESADVGVELLPALVARLVAAGVEVVEE 101 Query: 280 VRTQERLIM-----KLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVS 334 ER ++ E + + ++ + + + ++S Sbjct: 102 EDGAERSAAPSETGRVTAEHAGTA--DLVRMY---------LREIGRVPLLNAAQEVELS 150 Query: 335 EEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKY 394 + V L ++ L E +D+ + GEA AK+++V ANLRLV+S+AKKY Sbjct: 151 KRVEAGLFAEHKLATAADLEPELHRDLKLLVRDGEA----AKQQLVSANLRLVVSVAKKY 206 Query: 395 TNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPV 454 + RG+ LDL+QEGN+GL++AV+KF+Y +GYKFSTYATWWIRQAI R++ADQARTIRIPV Sbjct: 207 SGRGMTLLDLVQEGNLGLIRAVEKFDYAKGYKFSTYATWWIRQAIGRALADQARTIRIPV 266 Query: 455 HMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDD 514 H++E INK+ R+ RQ++ +GREPT EELA + MP +++ ++ + A++ +S+ET +GDD Sbjct: 267 HVVEQINKITRLQRQLVSTLGREPTDEELALELDMPLEQVVELRRYAQDTVSLETTVGDD 326 Query: 515 EDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLE 574 DS LGDFIED+ P D+A+ +++ VL L+ RE +V+R+RFG+ +TL Sbjct: 327 GDSVLGDFIEDSDATSPADAASYGAMQDEIDHVLGNLSPREREVMRLRFGLADGKQHTLA 386 Query: 575 EVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 EVG + +TRERIRQIE LR+LR P+ + LR FLD Sbjct: 387 EVGNRLGLTRERIRQIERDTLRELRKPAVAGRLREFLD 424 Score = 80.0 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 71/164 (43%), Gaps = 13/164 (7%) Query: 1 MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP 60 +++ S + L+ RG++ G ++ +E+ + L V + + ++ + G++V+EE Sbjct: 44 IDELDVSAVAELIARGRDSGEVSRSELREALESADVGVELLPALVARLVAAGVEVVEEED 103 Query: 61 DADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA 120 A+ AA V +E T D VRMY+RE+G V LL E++++ Sbjct: 104 GAE-------------RSAAPSETGRVTAEHAGTADLVRMYLREIGRVPLLNAAQEVELS 150 Query: 121 KRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITG 164 KR+E G+ + V EA L++ Sbjct: 151 KRVEAGLFAEHKLATAADLEPELHRDLKLLVRDGEAAKQQLVSA 194 >UniRef50_Q2JLG8 RNA polymerase sigma factor n=3 Tax=Cyanobacteria RepID=Q2JLG8_SYNJB Length = 320 Score = 306 bits (785), Expect = 1e-81, Method: Composition-based stats. Identities = 125/271 (46%), Positives = 183/271 (67%), Gaps = 3/271 (1%) Query: 344 LQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLD 403 L+++ L EQ + R ++ G A RAK+E+V ANLRLV+SIAKKY NRG+ FLD Sbjct: 47 LREMARYPLLNAEQEVKLGRLIAEGGAAGERAKRELVRANLRLVVSIAKKYLNRGVPFLD 106 Query: 404 LIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKL 463 LIQEG IGL++A +KFEY RGYKFSTYA WWIRQ ITR++A+Q R +RIPVHM+E +N++ Sbjct: 107 LIQEGTIGLIRAAEKFEYERGYKFSTYAYWWIRQGITRAVANQGRLVRIPVHMVEKLNQV 166 Query: 464 NRISRQMLQEMGREPTPEELAERMLMPEDKIRK---VLKIAKEPISMETPIGDDEDSHLG 520 RI R++ + + R PT E+AE + + DK+ +L+ ++ +S+ TP+G +ED L Sbjct: 167 KRIRRELTETLNRRPTQAEIAEALEISPDKLDALLTLLEAGRQTLSLHTPVGKEEDRELM 226 Query: 521 DFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQF 580 IED P L A ++L L+ RE ++L++R+G+ +TL E+G+ F Sbjct: 227 QLIEDANSLTPESQMDLHLLSAQLEEMLEQLSPREQEILKLRYGLKDGHLHTLSEIGQLF 286 Query: 581 DVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 ++RER+RQI+A+A+RKLRHP R E+L ++ Sbjct: 287 GLSRERVRQIQARAMRKLRHPRRQEILADWM 317 Score = 41.5 bits (96), Expect = 0.091, Method: Composition-based stats. Identities = 35/267 (13%), Positives = 78/267 (29%), Gaps = 32/267 (11%) Query: 56 MEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREG 115 M+ P+ ++ + + E + ++ + D V +++REM LL E Sbjct: 1 MKSQPNGTNVAVQNSPPPLKRVEVRLSKPGNRATQASLSEDSVGVFLREMARYPLLNAEQ 60 Query: 116 EIDIAKRI-------EDGINQVQCSVAEYPEAITY--------LLEQYDRVEAEEARLSD 160 E+ + + I E ++ + +I L+ R ++ Sbjct: 61 EVKLGRLIAEGGAAGERAKRELVRANLRLVVSIAKKYLNRGVPFLDLIQEGTIGLIRAAE 120 Query: 161 ----------------LITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDD 204 I + V + E E + Sbjct: 121 KFEYERGYKFSTYAYWWIRQGITRAVANQGRLVRIPVHMVEKLNQVKRIRRELTETLNRR 180 Query: 205 SADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFR-LVP 263 + + E++ +K L R T+ E+++L E Sbjct: 181 PTQAEIAEALEISPDKLDALLTLLEAGRQTLSLHTPVGKEEDRELMQLIEDANSLTPESQ 240 Query: 264 KQFDYLVNSMRVMMDRVRTQERLIMKL 290 L + M++++ +E+ I+KL Sbjct: 241 MDLHLLSAQLEEMLEQLSPREQEILKL 267 >UniRef50_C1CW22 RNA polymerase sigma factor n=3 Tax=Deinococci RepID=C1CW22_DEIDV Length = 547 Score = 306 bits (784), Expect = 2e-81, Method: Composition-based stats. Identities = 158/308 (51%), Positives = 210/308 (68%), Gaps = 7/308 (2%) Query: 308 GNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSI 367 N+ + + ++ E+ ++ + + + +EE+ L + + R+M Sbjct: 244 SNDPVRQYLHEIGRVSLLTLEEEIALARRIEEGEEARKLLEEDVELDDRGRRRLMRQMED 303 Query: 368 GEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKF 427 G A++ ++EANLRLV+SIAKKYT RGL FLDLIQEGN GL++AV+KFEYRR YKF Sbjct: 304 G----ANARQGLIEANLRLVVSIAKKYTGRGLGFLDLIQEGNQGLIRAVEKFEYRRRYKF 359 Query: 428 STYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERM 487 STYATWWIRQAI R+IADQARTIRIPVHM+ETINKL R +RQ+ QE+ RE T EE+AE M Sbjct: 360 STYATWWIRQAINRAIADQARTIRIPVHMVETINKLTRTARQLQQELSREATHEEIAEAM 419 Query: 488 --LMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATH 545 K+ +V K+++EP+S+ETPIGD++DS GDFI D L+ P+++A L Sbjct: 420 GPGWDAAKVEEVQKVSQEPVSLETPIGDEKDSFYGDFIPDENLDSPVENAAKTLLSEELE 479 Query: 546 DVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLR-HPSRS 604 L+ LT REA VL+ R G+ ++TLEEVG++F VTRERIRQIE KALRKL+ H SR+ Sbjct: 480 KALSKLTEREAMVLKFRKGLVDGREHTLEEVGQRFSVTRERIRQIENKALRKLKYHESRT 539 Query: 605 EVLRSFLD 612 LR FLD Sbjct: 540 RKLRDFLD 547 Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 11/132 (8%) Query: 9 LKLLVTRGKEQGYLTYAEVNDHLPE-------DIVDSDQIEDIIQMINDMGIQVMEEAPD 61 ++ ++ G+ G L+ EV L D D ED+ + I+V + D Sbjct: 148 IQDMLKAGRAAGVLSSEEVAAALGLALEANGLDPESPDAFEDMQLYLAGQNIEVQDLDED 207 Query: 62 ADDLMLAEN----TADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEI 117 D+ + AA + + + DPVR Y+ E+G V LLT E EI Sbjct: 208 EDEDTDDDAEVEEVPGARAATDDDEEKYFDDMPRAVSNDPVRQYLHEIGRVSLLTLEEEI 267 Query: 118 DIAKRIEDGINQ 129 +A+RIE+G Sbjct: 268 ALARRIEEGEEA 279 >UniRef50_Q1ATP3 RNA polymerase sigma factor n=2 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1ATP3_RUBXD Length = 366 Score = 306 bits (783), Expect = 2e-81, Method: Composition-based stats. Identities = 139/269 (51%), Positives = 194/269 (72%), Gaps = 3/269 (1%) Query: 343 KLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL 402 L +I LT + + +S G +R+K ++VEANLRLV+SIAKKY NRG+ FL Sbjct: 100 YLAEIGRVPLLTHADEIRLAKAISRG---CKRSKDKLVEANLRLVVSIAKKYRNRGVSFL 156 Query: 403 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 462 DLIQEGNIGL++A +KF+YR+G+KFSTYATWWIRQAITR+IAD+ RTIRIPVHM+E +NK Sbjct: 157 DLIQEGNIGLIRAAEKFDYRKGFKFSTYATWWIRQAITRAIADKGRTIRIPVHMVEKVNK 216 Query: 463 LNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDF 522 +R R+M Q +GREPT EE+AE + +P +++ ++ +I++ IS+ETP+GDDE S LGDF Sbjct: 217 YHRTQRRMTQALGREPTDEEVAEELGVPVEEVLRLQEISQRSISLETPVGDDESSSLGDF 276 Query: 523 IEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDV 582 +ED + P D+ + L+ + L L RE +++ MRFG+ + TLEEVG++FD+ Sbjct: 277 LEDASAVTPTDAVSESLLKLHLREALDELPERERQIIEMRFGMKDDRPRTLEEVGREFDI 336 Query: 583 TRERIRQIEAKALRKLRHPSRSEVLRSFL 611 TRER+RQI+ K L LR R++ LR +L Sbjct: 337 TRERVRQIQMKTLNLLREQRRTQNLREYL 365 Score = 95.1 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 38/152 (25%), Positives = 72/152 (47%), Gaps = 7/152 (4%) Query: 11 LLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLAEN 70 L+++G+ QG+L+ +V D + E + D+ E++ + + I +++E + + E Sbjct: 15 ELLSKGRSQGFLSAEDVADLVREGDLSPDEAEELYATLEEEDITLVDEELEGAAEVTPER 74 Query: 71 TADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQV 130 A + A+Q+ +V T D +RMY+ E+G V LLT EI +AK I G + Sbjct: 75 AAGREGDNPASQLAHAVA-----TGDSIRMYLAEIGRVPLLTHADEIRLAKAISRGCKRS 129 Query: 131 QCSVAEYPEAITYLLEQYDRVEAEEARLSDLI 162 + + E + ++ + DLI Sbjct: 130 KDKLVEA--NLRLVVSIAKKYRNRGVSFLDLI 159 >UniRef50_B5YKM1 RNA polymerase sigma factor n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKM1_THEYD Length = 479 Score = 306 bits (783), Expect = 2e-81, Method: Composition-based stats. Identities = 156/406 (38%), Positives = 243/406 (59%), Gaps = 20/406 (4%) Query: 210 NSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLS--EVFKQFRLVPKQFD 267 P L +E+ EL + + IK + Q+ + +++ E + K + Sbjct: 86 MGDIPILTKEEEVELAKKLQEGKSIIKETVMGLSLYQKILEEINKEEDSETLTEEDKAEE 145 Query: 268 YLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWS 327 L ++ + + + E++ K I + + N + + + Sbjct: 146 ALSRTIIRLENLINDIEKIEQK-------------IKEYGSLKELRKQINEKKRVGEN-T 191 Query: 328 EKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLV 387 ++L ++ +E+H ++K+ E E+GL I+++K+I +++ + K E++ NLRLV Sbjct: 192 KQLENLYKEIHAEIKKI---ENESGLKIDELKNIWQKIYKAKCLVEDTKNELITRNLRLV 248 Query: 388 ISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA 447 ++IAK Y RGL LDLI+EGNIGLMKAVDKF+Y +G+KFSTYATWWIRQAITR++ DQ Sbjct: 249 VNIAKNYVGRGLPLLDLIEEGNIGLMKAVDKFKYEKGFKFSTYATWWIRQAITRALIDQT 308 Query: 448 RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISM 507 +TIR+PVHM+E N++ + SR++ Q++GREP EE+AE++ +P K+ +V + ++PI + Sbjct: 309 KTIRVPVHMMEFYNRVTKASRELTQQLGREPNNEEIAEKLGVPVRKVEEVFRAIQDPIGL 368 Query: 508 ETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDM 567 +TPIG DED+ L DFI D T P+ A L +L LT +E KV++MRFGI Sbjct: 369 QTPIG-DEDTELEDFIGDKTSPSPVSEAERTELSEHIQRILKTLTPKEEKVIKMRFGIGE 427 Query: 568 NTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 + D+TLEEVG+ +TRER+RQIE KALRKL+HPSR +L+ D Sbjct: 428 DRDHTLEEVGRYLSITRERVRQIETKALRKLKHPSRMRLLKMLTSD 473 Score = 92.4 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 52/249 (20%), Positives = 102/249 (40%), Gaps = 32/249 (12%) Query: 6 QSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDL 65 + + +V GK++G LTY E+N+ LP + ++IED+I +++DMG++V++E Sbjct: 4 RDIFEEIVNLGKKRGKLTYDEINEALPSEYYSPEEIEDLIDVLSDMGVRVVDE------- 56 Query: 66 MLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIED 125 E E D V+ Y MG + +LT+E E+++AK++++ Sbjct: 57 ----------DEEEVFLEEEEEIEEEEHVEDLVQAYFNSMGDIPILTKEEEVELAKKLQE 106 Query: 126 GINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSEL 185 G + ++ +V +LE+ ++ E E EED A A Sbjct: 107 GKSIIKETVMGLSL-YQKILEEINKEEDSETL------------TEEDKAEEALSRTIIR 153 Query: 186 SQEDLDDDEDEDE--EDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHA 243 + ++D E ++ ++ + + E +L Y IK Sbjct: 154 LENLINDIEKIEQKIKEYGSLKELRKQINEKKRVGENTKQLENLYKEIHAEIKKIENESG 213 Query: 244 TAQEEILKL 252 +E+ + Sbjct: 214 LKIDELKNI 222 >UniRef50_B7K1V2 RNA polymerase sigma factor n=13 Tax=cellular organisms RepID=B7K1V2_CYAP8 Length = 379 Score = 306 bits (783), Expect = 2e-81, Method: Composition-based stats. Identities = 147/283 (51%), Positives = 203/283 (71%), Gaps = 5/283 (1%) Query: 329 KLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVI 388 +L + E++ + + E + + RR+ +G R+AK +MV +NLRLV+ Sbjct: 101 ELERIREKMTEHMGRFPTDLEWSQAINMEWHAFQRRLYLG----RKAKDKMVHSNLRLVV 156 Query: 389 SIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQAR 448 SIAKKY NRGL F DLIQEG++GL++A +KF++ +GYKFSTYATWWIRQAITR+IADQ+R Sbjct: 157 SIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSR 216 Query: 449 TIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISME 508 TIR+PVH+ ETI+++ + ++ + QEM R+PT EE+A RM M +K+R + K A+ PIS+E Sbjct: 217 TIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLE 276 Query: 509 TPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMN 568 TPIG +EDS LGDFIE E P D + LR +VL L+ RE VLR+R+G+D Sbjct: 277 TPIGKEEDSRLGDFIEADG-ENPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDG 335 Query: 569 TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 TLEE+G+ F+VTRERIRQIEAKALRKLRHP+R+ +L+ ++ Sbjct: 336 RMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 378 Score = 43.1 bits (100), Expect = 0.037, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 12/91 (13%) Query: 33 EDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIG 92 +D D+ E+I M ++ +VM N + + +A + Sbjct: 18 PFFIDPDEGEEIELMTDEALDEVM------------ANPEGKKTRKLSASRRRDPNKKKP 65 Query: 93 RTTDPVRMYMREMGTVELLTREGEIDIAKRI 123 T D +R+Y++E+G + LL E EI++A++I Sbjct: 66 YTEDSIRIYLQEIGRIRLLRAEEEIELARKI 96 >UniRef50_Q1J156 RNA polymerase sigma factor n=13 Tax=Bacteria RepID=Q1J156_DEIGD Length = 532 Score = 305 bits (781), Expect = 4e-81, Method: Composition-based stats. Identities = 157/283 (55%), Positives = 200/283 (70%), Gaps = 6/283 (2%) Query: 333 VSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAK 392 ++ + + + +EE E RR+ A++ ++EANLRLV+SIAK Sbjct: 253 LARRIEEGEEARKMLEEA---GDELDDRARRRLMRQMEDGAAARQGLIEANLRLVVSIAK 309 Query: 393 KYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRI 452 KYT RGL FLDLIQEGN GL++AV+KFEYRR YKFSTYATWWIRQAI R+IADQARTIRI Sbjct: 310 KYTGRGLGFLDLIQEGNQGLIRAVEKFEYRRRYKFSTYATWWIRQAINRAIADQARTIRI 369 Query: 453 PVHMIETINKLNRISRQMLQEMGREPTPEELAERM--LMPEDKIRKVLKIAKEPISMETP 510 PVHM+ETINKL R +RQ+ QE+ REPT EE+AE M K+ +V K+++EP+S+ETP Sbjct: 370 PVHMVETINKLTRTARQLQQELSREPTYEEIAEAMGPGWDAAKVEEVQKVSQEPVSLETP 429 Query: 511 IGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTD 570 IGD++DS GDFI D L+ P+D+A L L+ LT REA VL+ R G+ + Sbjct: 430 IGDEKDSFYGDFIPDENLDSPVDNAAKTLLSEELEKALSKLTEREALVLKFRKGLVDGRE 489 Query: 571 YTLEEVGKQFDVTRERIRQIEAKALRKLR-HPSRSEVLRSFLD 612 +TLEEVG++F+VTRERIRQIE KALRKL+ H SR+ LR FLD Sbjct: 490 HTLEEVGQRFNVTRERIRQIENKALRKLKYHESRTRKLRDFLD 532 Score = 58.1 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 3/99 (3%) Query: 34 DIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSS---VESE 90 D ++ ED+ + I+V + + D L E AA + Sbjct: 165 DPESAEAFEDMQLYLAGQNIEVQDLDEEDQDDDLEEGEEGAVTGAAANDDEEERYFDDMP 224 Query: 91 IGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQ 129 + DPVR Y+ E+G V LLT E EI +A+RIE+G Sbjct: 225 RAVSNDPVRQYLHEIGRVPLLTLEEEIALARRIEEGEEA 263 >UniRef50_C5B6H5 RNA polymerase sigma factor n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B6H5_METEA Length = 531 Score = 305 bits (781), Expect = 4e-81, Method: Composition-based stats. Identities = 118/263 (44%), Positives = 179/263 (68%) Query: 351 TGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNI 410 G ++ + + + R + R+A+ +V +NLRLV S+AKKYTNR L LDL+QEGNI Sbjct: 267 FGGSVRRFRLVQREVRAAHGDLRKARDTLVTSNLRLVFSVAKKYTNRPLPILDLVQEGNI 326 Query: 411 GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQM 470 GLM+A++KF+YRRG+KFSTYA WWI+Q+I+RSIAD RTIR+PVH+ E K++R + ++ Sbjct: 327 GLMRAIEKFDYRRGWKFSTYAIWWIKQSISRSIADHGRTIRLPVHLHEKAAKIDRTAARL 386 Query: 471 LQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLEL 530 E+GR P+P ELA+ + + ++ +++ +++E +S++ P+G+D D GD +ED Sbjct: 387 RAELGRPPSPPELAQALDIDVRQVERLMNMSRETVSLDLPVGEDGDVRFGDLVEDEKAPD 446 Query: 531 PLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQI 590 P+ A L+ A D + L RE ++RMRFGI TLEE+G+ F ++RER+RQ+ Sbjct: 447 PVGLADLAKLKDAVSDAVGDLPEREQTIIRMRFGIGYADQMTLEEIGQHFRISRERVRQV 506 Query: 591 EAKALRKLRHPSRSEVLRSFLDD 613 E+KA+++LR P LR FLDD Sbjct: 507 ESKAIQRLRSPEIGAYLRKFLDD 529 Score = 46.5 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 30/77 (38%) Query: 85 SSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYL 144 S D + Y RE+G +LTRE E+ +AKR+E + S + Sbjct: 47 SEPTRGPEAVPDALSFYAREIGRHRVLTREEEVALAKRVEAARLSLFASFVALGSMARFA 106 Query: 145 LEQYDRVEAEEARLSDL 161 E V + R DL Sbjct: 107 AEWRSAVVSGAMRPWDL 123 >UniRef50_P38023 RNA polymerase sigma factor rpoD1 n=7 Tax=cellular organisms RepID=RPOD1_SYNE7 Length = 399 Score = 303 bits (775), Expect = 2e-80, Method: Composition-based stats. Identities = 149/283 (52%), Positives = 199/283 (70%), Gaps = 5/283 (1%) Query: 329 KLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVI 388 L + +E+ L +L E V + RRAK +MV++NLRLV+ Sbjct: 121 ALERIRDELLEQLDRLPSDAE----WAAAVDSPLDEFRRRLFRGRRAKDKMVQSNLRLVV 176 Query: 389 SIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQAR 448 SIAKKY NRGL F DLIQEG++GL++A +KF++ +GYKFSTYATWWIRQAITR+IADQ+R Sbjct: 177 SIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSR 236 Query: 449 TIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISME 508 TIR+PVH+ ETI+++ + ++ + QEMGR+PT EE+A RM M +K+R + K A+ PIS+E Sbjct: 237 TIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLE 296 Query: 509 TPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMN 568 TPIG +EDS LGDFIE E P D LR VL+ L+ RE VLR+R+G+D Sbjct: 297 TPIGKEEDSRLGDFIEADG-ETPEDEVAKNLLREDLEGVLSTLSPRERDVLRLRYGLDDG 355 Query: 569 TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 TLEE+G+ F+VTRERIRQIEAKALRKLRHP+R+ +L+ ++ Sbjct: 356 RMKTLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 398 Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 2/72 (2%) Query: 54 QVMEEAPDADDLMLAENTADED--AAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELL 111 V+E A + DED + A + + T D +R+Y++E+G + LL Sbjct: 45 AVVEPATTIAPTADVDAIDDEDSVGEDEDAAAKAKAKVRKTYTEDSIRLYLQEIGRIRLL 104 Query: 112 TREGEIDIAKRI 123 + EI++A++I Sbjct: 105 RADEEIELARQI 116 >UniRef50_B1WS32 RNA polymerase sigma factor n=5 Tax=Chroococcales RepID=B1WS32_CYAA5 Length = 416 Score = 302 bits (774), Expect = 2e-80, Method: Composition-based stats. Identities = 167/421 (39%), Positives = 251/421 (59%), Gaps = 31/421 (7%) Query: 195 DEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAK----GRSHATAQEEIL 250 DED E +D A+ + +++ + + + T D+I+ GR EE + Sbjct: 22 DEDIESSGNDIAETETKKTRKISASRRRDPSKKKPYTEDSIRVYLQEIGRIRLLRAEEEI 81 Query: 251 KLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNE 310 +L+ Q + + ++ +D+ T E+ ++ + + + + + Sbjct: 82 ELARKIADL----LQLERIREALWEELDQEPTDEQWGKRIFQWE---NIEQMLRAQSAKD 134 Query: 311 TSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEA 370 W + + ++ L+K ++E + L RR+ +G Sbjct: 135 KDPKWSEVTTMLQQA----------DIISDLEKTWKLESKAYLP-----KFKRRLYLG-- 177 Query: 371 KARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY 430 R+AK +MV +NLRLV+SIAKKY NRGL F DLIQEG++GL++A +KF++ +GYKFSTY Sbjct: 178 --RKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTY 235 Query: 431 ATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMP 490 ATWWIRQAITR+IADQ+RTIR+PVH+ ETI+++ + ++ + QEM R+PT EE+A RM M Sbjct: 236 ATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIATRMEMT 295 Query: 491 EDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAG 550 +K+R + K A+ PIS+ETPIG +EDS LGDFIE E P D + LR +VL Sbjct: 296 IEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG-ETPEDEVSKNLLREDLENVLDT 354 Query: 551 LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSF 610 L+ RE VLR+R+G+D TLEE+G+ F+VTRERIRQIEAKALRKLRHP+R+ +L+ + Sbjct: 355 LSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 414 Query: 611 L 611 + Sbjct: 415 I 415 Score = 42.3 bits (98), Expect = 0.052, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query: 55 VMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTRE 114 ++E ++ +AE + + +A + T D +R+Y++E+G + LL E Sbjct: 20 FVDEDIESSGNDIAETETKK-TRKISASRRRDPSKKKPYTEDSIRVYLQEIGRIRLLRAE 78 Query: 115 GEIDIAKRI 123 EI++A++I Sbjct: 79 EEIELARKI 87 >UniRef50_D2AWC8 RNA polymerase sigma factor n=3 Tax=Streptosporangineae RepID=D2AWC8_STRRD Length = 452 Score = 302 bits (773), Expect = 3e-80, Method: Composition-based stats. Identities = 128/296 (43%), Positives = 190/296 (64%), Gaps = 4/296 (1%) Query: 314 TWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKAR 373 T+ + + + ++++ + L ++E E GL+ D+ G Sbjct: 158 TYLKSIGRRTLLTAAQEVELAKRIEAGLYAESKLEAEPGLSAAARDDLEWVAEDGRR--- 214 Query: 374 RAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW 433 AK M+EANLRLV+S+AKKYT+RG+ LD++QEGN+GL++AV+KF+Y +GYKFSTYA W Sbjct: 215 -AKDHMLEANLRLVVSVAKKYTDRGMALLDVVQEGNLGLIRAVEKFDYTKGYKFSTYAMW 273 Query: 434 WIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDK 493 WIRQAI R AD ARTIR+PVH++E ++KL+R+ R M Q +GREPTPEELA + D+ Sbjct: 274 WIRQAIQRGFADSARTIRLPVHVLEMLSKLSRVERDMHQRLGREPTPEELAVELDKTPDQ 333 Query: 494 IRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTA 553 I ++L+ +++PIS+ IG+D ++ +GD IED + + L VL L+ Sbjct: 334 IEELLRTSRQPISLNATIGEDGETTIGDLIEDVDSPEASEVVDRQLLGEQLRGVLGNLSP 393 Query: 554 REAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRS 609 REAK++ +RFG+ +TL+E+GK +TRERIRQ+E ++L KLRHPS + L Sbjct: 394 REAKIMALRFGLVDGKPHTLDEIGKHLGLTRERIRQLEKESLSKLRHPSNTRPLLD 449 Score = 52.7 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 37/203 (18%), Positives = 70/203 (34%), Gaps = 52/203 (25%) Query: 9 LKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQV------------- 55 L+ L+ RG+ QG+L+ AE+ E + + I++ + + G+ + Sbjct: 16 LEQLLDRGRVQGHLSLAELRHAFAEAGISPTEGRSILRELTEAGVSLAAENEPALAAGAK 75 Query: 56 --------------------------------MEEAPDADDLMLAENTADEDAA------ 77 + P A D A A ++ Sbjct: 76 KPAAKSTARKTTTRKTKAASDKTAAPENNKSTVRAEPAAKDRKDAGPEAGDEEWTAPEEA 135 Query: 78 EAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEY 137 E A+ ++ + D V Y++ +G LLT E+++AKRIE G+ + + Sbjct: 136 ELEAEPTLDLDDQSSVMGDSVHTYLKSIGRRTLLTAAQEVELAKRIEAGLY-AESKLEAE 194 Query: 138 PEAITYLLEQYDRVEAEEARLSD 160 P + + V + R D Sbjct: 195 PGLSAAARDDLEWVAEDGRRAKD 217 >UniRef50_C9LM97 RNA polymerase sigma factor n=1 Tax=Dialister invisus DSM 15470 RepID=C9LM97_9FIRM Length = 394 Score = 301 bits (772), Expect = 3e-80, Method: Composition-based stats. Identities = 155/258 (60%), Positives = 182/258 (70%), Gaps = 9/258 (3%) Query: 343 KLQQIEEETGLTIEQVKDINRRMSIGE---------AKARRAKKEMVEANLRLVISIAKK 393 L++ LT EQ + + + IG+ A AKKEM ANLRLV+SIAKK Sbjct: 120 YLRECGTTPLLTSEQEMKLAQTIEIGKMPEATDEQKRMAAEAKKEMANANLRLVVSIAKK 179 Query: 394 YTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIP 453 Y RG+ FLDLIQEGN+GL+KAVDKF+Y +GYKFSTYATWWIRQAITRSIADQARTIR+P Sbjct: 180 YPGRGMPFLDLIQEGNMGLLKAVDKFDYTKGYKFSTYATWWIRQAITRSIADQARTIRVP 239 Query: 454 VHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGD 513 VHM+ETINK+NR+ R LQE GRE T EELA+ M +KIR+ K A++PIS+ETPIG+ Sbjct: 240 VHMVETINKMNRVGRHFLQEHGREATNEELAKEMETSVEKIREAKKAAQDPISLETPIGE 299 Query: 514 DEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTL 573 EDSHLGDFIED P D A R H +L LT RE V+ +R+GID T TL Sbjct: 300 KEDSHLGDFIEDQKTASPEDEAAATMRREQIHQLLETLTEREKGVIALRYGIDDGTQRTL 359 Query: 574 EEVGKQFDVTRERIRQIE 591 EEVGK F VTRERIRQIE Sbjct: 360 EEVGKYFGVTRERIRQIE 377 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 19/136 (13%) Query: 9 LKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDL--- 65 LK L + G + Y ++ E + S Q++ + + +++ G++++ E D+ Sbjct: 15 LKELQDKVNADGNIKYDDILLFTKEKSLTSKQLDSVFKALHEGGVEIIYEEDGKDEFRDG 74 Query: 66 -------------MLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLT 112 AE DE E +S+ + TDPVR+Y+RE GT LLT Sbjct: 75 ESEEEFEDELLEDGDAEADVDEKEWEKGDGDISA---DPAGITDPVRLYLRECGTTPLLT 131 Query: 113 REGEIDIAKRIEDGIN 128 E E+ +A+ IE G Sbjct: 132 SEQEMKLAQTIEIGKM 147 >UniRef50_P26683 RNA polymerase sigma factor rpoD n=19 Tax=cellular organisms RepID=RPOD_ANASP Length = 390 Score = 301 bits (770), Expect = 7e-80, Method: Composition-based stats. Identities = 150/283 (53%), Positives = 201/283 (71%), Gaps = 5/283 (1%) Query: 329 KLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVI 388 +L V E + L++ + E + R+ IG AK +MV++NLRLV+ Sbjct: 112 ELERVRERLSEKLERDPRDSEWAEAVQLPLPAFRYRLHIGRR----AKDKMVQSNLRLVV 167 Query: 389 SIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQAR 448 SIAKKY NRGL F DLIQEG++GL++A +KF++ +GYKFSTYATWWIRQAITR+IADQ+R Sbjct: 168 SIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSR 227 Query: 449 TIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISME 508 TIR+PVH+ ETI+++ + ++ + QEMGR+PT EE+A RM M +K+R + K A+ PIS+E Sbjct: 228 TIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLE 287 Query: 509 TPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMN 568 TPIG +EDS LGDFIE E P D + LR VL L+ RE VLR+R+G+D Sbjct: 288 TPIGKEEDSRLGDFIESDG-ETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDG 346 Query: 569 TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 TLEE+G+ F+VTRERIRQIEAKALRKLRHP+R+ VL+ ++ Sbjct: 347 RMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 389 Score = 47.3 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 57/115 (49%), Gaps = 3/115 (2%) Query: 40 QIEDIIQMINDMGIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVR 99 +++D++ D + + ++ + L + D + +AA + + T D +R Sbjct: 25 ELDDLLIE-EDEDLLLADDGDIDEFLEPQTDEDDAKSGKAAKSRRRTQSKKKHYTEDSIR 83 Query: 100 MYMREMGTVELLTREGEIDIAKRIED--GINQVQCSVAEYPEAITYLLEQYDRVE 152 +Y++E+G + LL + EI++A++I D + +V+ ++E E E + V+ Sbjct: 84 LYLQEIGRIRLLRADEEIELARKIADLLELERVRERLSEKLERDPRDSEWAEAVQ 138 >UniRef50_C7H329 RNA polymerase sigma factor n=2 Tax=Faecalibacterium prausnitzii RepID=C7H329_9FIRM Length = 461 Score = 300 bits (768), Expect = 1e-79, Method: Composition-based stats. Identities = 152/409 (37%), Positives = 222/409 (54%), Gaps = 15/409 (3%) Query: 196 EDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILK--LS 253 +DE DGD + + E A EL D + A +E+L + Sbjct: 48 DDEADGDTSLDVEGIMAEVESAEANSDELGLGDENEDDPAEENPADLKAAMDELLDDPVK 107 Query: 254 EVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCK----MPKKNFITLFTGN 309 KQ +P + + I++ ++ + K + F + Sbjct: 108 NYLKQIGQIPLLSAEQEVDLSKRIHAGAEA-AHILQADRQKYGAPEYIKKNSARFSFEED 166 Query: 310 ETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGE 369 E S ++ + + ++ E ++ + + Sbjct: 167 ENSRSYTEDLDEDG--------NTKSSEDDEEKAAEEEAMEAVENGPLTEERRQELLKIR 218 Query: 370 AKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFST 429 A++ + EANLRLV+SIAKK+ L FLDLIQEGNIGL+KA +KF+ RG++FST Sbjct: 219 RDGLNARRSLSEANLRLVVSIAKKHVGHNLAFLDLIQEGNIGLIKAAEKFDCDRGFRFST 278 Query: 430 YATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLM 489 YATWWIRQAITR+IADQARTIRIPVHM+ETIN++ + + Q++ + G EPTPEELA+ M M Sbjct: 279 YATWWIRQAITRAIADQARTIRIPVHMVETINRMRQATNQLVYQNGHEPTPEELAKAMDM 338 Query: 490 PEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLA 549 +++R++ ++A+EP S+E+P+G++EDS LGDF+ D E P +A + + L Sbjct: 339 SVERVREIQRMAQEPASLESPVGEEEDSSLGDFVADENAEAPGKAADRAMVAQQINQALK 398 Query: 550 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKL 598 LT RE KV+R+RFG+D TLEEVG+ F VTRER+RQIEAKA+RKL Sbjct: 399 SLTPREEKVIRLRFGLDDGRPRTLEEVGRDFGVTRERVRQIEAKAIRKL 447 Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 66/141 (46%), Gaps = 26/141 (18%) Query: 9 LKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLA 68 LK L+T+G +G LT E + +D +E + ++ + GI+++++ D D + Sbjct: 5 LKELLTKG--EGTLTAGEAKTLASQCRMD---VETLYTLLEERGIKILDDEADGDTSLDV 59 Query: 69 E-------------------NTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVE 109 E + ++D AE L + E+ DPV+ Y++++G + Sbjct: 60 EGIMAEVESAEANSDELGLGDENEDDPAEENPADLKAAMDEL--LDDPVKNYLKQIGQIP 117 Query: 110 LLTREGEIDIAKRIEDGINQV 130 LL+ E E+D++KRI G Sbjct: 118 LLSAEQEVDLSKRIHAGAEAA 138 >UniRef50_D2ML80 RNA polymerase, sigma 70 subunit, RpoD family n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2ML80_9BACT Length = 414 Score = 299 bits (767), Expect = 2e-79, Method: Composition-based stats. Identities = 136/414 (32%), Positives = 215/414 (51%), Gaps = 14/414 (3%) Query: 200 DGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEV---- 255 D D P + + + T DT+ + E K + + Sbjct: 5 DHKPFDVDKRAYQHPANGKRPVSNVFPHGTPTLDTLIEDLPGDKKNENEEPKDTALEPIY 64 Query: 256 FKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKM--PKKNFITLFTGNETSD 313 F+ FR P + +D R ++ ++ + S Sbjct: 65 FRTFRSHPLLGKEKELELAKCIDESSETIRSVLTQAIQFAGTLGDRPEIQEAVH----SL 120 Query: 314 TWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKAR 373 T ++ P L++ E + L +T + ++++ + ++ + Sbjct: 121 TEIRGLSGLSAP---ALNEAEERLAGLRNALPGRGLKTRMLGKRLQRLQHELAEHRVQLE 177 Query: 374 RAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW 433 RAK+ +V+ NLRLV+ IAK++T RG+ FLDLIQEGNIGLM+A ++F+YR+G+KFSTYATW Sbjct: 178 RAKEGLVQHNLRLVVDIAKRFTGRGMGFLDLIQEGNIGLMRAAERFQYRKGFKFSTYATW 237 Query: 434 WIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDK 493 W+RQ I R++ADQ+RTIR+PVH E ++ +IS ++ Q++GREP+ EE+A + + ++ Sbjct: 238 WVRQGILRAVADQSRTIRVPVHTTEAWQRMIKISHRLAQKLGREPSNEEIALALAVKPER 297 Query: 494 IRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTA 553 ++ + EPIS + P D ++ LGD + D P + E +R+ H +L LT Sbjct: 298 VQHTTQAFLEPISFDQP-NADGETFLGDCLPDDHASPPDEHLQEEQMRSQLHRLLRVLTP 356 Query: 554 REAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVL 607 RE +V+R+RFGI TLEEVGK +VTRERIRQIE A++KLR P+ L Sbjct: 357 REEQVIRLRFGIGNGQSRTLEEVGKLLNVTRERIRQIEVLAMKKLREPTVKAQL 410 >UniRef50_P74565 RNA polymerase sigma factor rpoD n=23 Tax=cellular organisms RepID=RPOD_SYNY3 Length = 425 Score = 299 bits (765), Expect = 3e-79, Method: Composition-based stats. Identities = 144/276 (52%), Positives = 194/276 (70%), Gaps = 1/276 (0%) Query: 336 EVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYT 395 ++ L +Q RRAK +MV++NLRLV+SIAKKY Sbjct: 150 DIDSYLANPDNELSLENEWSQQPNKNFAAFRRRLFLDRRAKDKMVQSNLRLVVSIAKKYM 209 Query: 396 NRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVH 455 NRGL F DLIQEG++GL++A +KF++ +GYKFSTYATWWIRQAITR+IADQ+RTIR+PVH Sbjct: 210 NRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVH 269 Query: 456 MIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDE 515 + ETI+++ + ++ + QEM R+PT EE+AE+M M +K+R + K A+ PIS+ETPIG +E Sbjct: 270 LYETISRIKKTTKLLSQEMRRKPTEEEIAEKMEMTIEKLRFIAKSAQLPISLETPIGKEE 329 Query: 516 DSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEE 575 DS LGDFIE E P D + LR +VL L+ RE VLR+R+G+D TLEE Sbjct: 330 DSRLGDFIEADG-ETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEE 388 Query: 576 VGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 +G+ F+VTRERIRQIEAKALRKLRHP+R+ +L+ ++ Sbjct: 389 IGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 424 >UniRef50_A9AU99 RNA polymerase sigma factor n=2 Tax=Chloroflexi (class) RepID=A9AU99_HERA2 Length = 391 Score = 298 bits (764), Expect = 3e-79, Method: Composition-based stats. Identities = 124/298 (41%), Positives = 199/298 (66%), Gaps = 4/298 (1%) Query: 315 WFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARR 374 + + +E+ +++++ + Q++ E T ++ + RR+ G Sbjct: 98 YLREIGEVELLTAEEEITLAKQIETGRKAEHQLQTEQYATWDERTALERRVDFG----NE 153 Query: 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 434 ++++ +ANLRLV+S+AKKY + F+DLIQEGNIGLM+AV+KF+YR+G +FSTYATWW Sbjct: 154 GRRKLTQANLRLVVSVAKKYIGNHMSFMDLIQEGNIGLMRAVEKFDYRKGNRFSTYATWW 213 Query: 435 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKI 494 IRQA+TR+IA+Q+RTIR+PVH+ E+I ++ R++ Q+ Q + RE TP+ELA+ + + K+ Sbjct: 214 IRQAVTRAIAEQSRTIRLPVHLSESIAQMRRVAYQLEQALQREATPDELADALGVSLRKV 273 Query: 495 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAR 554 +++L + +P+S+E PIG + +G+F+ D T E PL+ AT L+ D L+ L R Sbjct: 274 KRMLNASVQPVSLEQPIGKEGQGRVGEFLADDTDEAPLEQATRMMLQDELADALSQLPDR 333 Query: 555 EAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 E ++L +R+G+ TLEEVG +F +TRER RQIEA+A+R LR P+ + LR++LD Sbjct: 334 ERQILLLRYGLADGKRRTLEEVGAEFGITRERTRQIEAEAMRHLRQPNVGQHLRAYLD 391 Score = 53.8 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 2/74 (2%) Query: 56 MEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREG 115 +E+AP+ +L N D + A + ++ SE D V+MY+RE+G VELLT E Sbjct: 55 LEDAPEGWELEPGFNDEDVELAIVNLRRKKTLYSEA--VEDSVQMYLREIGEVELLTAEE 112 Query: 116 EIDIAKRIEDGINQ 129 EI +AK+IE G Sbjct: 113 EITLAKQIETGRKA 126 >UniRef50_C1E4E8 Predicted protein n=2 Tax=Micromonas RepID=C1E4E8_9CHLO Length = 595 Score = 298 bits (762), Expect = 6e-79, Method: Composition-based stats. Identities = 127/308 (41%), Positives = 192/308 (62%), Gaps = 10/308 (3%) Query: 316 FNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETG-------LTIEQVKDINRRMSIG 368 + +L +++ +++EEE G + + + + Sbjct: 279 IGTVSLLTGAEEVELAKRIQDLMYLNSVCERLEEENGGKEPTRFMWAIECNITEQELERR 338 Query: 369 EAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS 428 + +RAK M++ANLRLV+SIAK+Y N+ + F DLIQEG +GL++ +KF+++RGYKFS Sbjct: 339 LEEGKRAKNAMIQANLRLVVSIAKRYANKSMSFQDLIQEGCVGLIRGAEKFDFKRGYKFS 398 Query: 429 TYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERML 488 TYA WWIRQA+TRSI+DQ+RTIR+PVH+ E I++++++ RQM+ ++GR+PT EELA+ M Sbjct: 399 TYAHWWIRQAVTRSISDQSRTIRLPVHLFEIISRMSKVERQMVLKLGRDPTHEELADAME 458 Query: 489 MPEDKIRKVLKIAKEPISMETPIGD---DEDSHLGDFIEDTTLELPLDSATTESLRAATH 545 M +KI+++ K + PIS+ + + ++ + D + D E P L+ Sbjct: 459 MTVEKIKQIKKASLVPISLSQTVNNSNGEDKRTVEDTLIDDYTEHPEGETGKVLLKEDLE 518 Query: 546 DVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSE 605 +VL L RE VLR+R+G+D TLEE+G F VTRERIRQIEAKALRKLR PSR+ Sbjct: 519 NVLNTLNPRERDVLRLRYGLDDGRVKTLEEIGNVFSVTRERIRQIEAKALRKLRQPSRNG 578 Query: 606 VLRSFLDD 613 +LR +L + Sbjct: 579 ILREYLPN 586 Score = 45.4 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 35/64 (54%) Query: 62 ADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAK 121 A+ E A + ++ ++ + TD ++ Y++++GTV LLT E+++AK Sbjct: 236 AEPGSAQEANEASAAESRRNRRIARKNADTKKQTDSMKTYLKDIGTVSLLTGAEEVELAK 295 Query: 122 RIED 125 RI+D Sbjct: 296 RIQD 299 >UniRef50_B8LLW6 Putative uncharacterized protein n=2 Tax=Picea sitchensis RepID=B8LLW6_PICSI Length = 592 Score = 297 bits (761), Expect = 8e-79, Method: Composition-based stats. Identities = 120/318 (37%), Positives = 190/318 (59%), Gaps = 16/318 (5%) Query: 311 TSDTWFNAAIAMNKPWSE-KLHDVSEEVH--------------RALQKLQQIEEETGLTI 355 +S + +I + + WS +L SEEV RA K + +E T Sbjct: 274 SSKGHISDSIRLLRDWSSSRLLTASEEVELSRGIQDLIKLDRIRAKYKEKTGKEPTLAQW 333 Query: 356 EQVKDINRRMSIGEAK-ARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK 414 +V ++++ + R + +++ NLRLVIS+AK Y NRGL DLIQ G++GLM+ Sbjct: 334 AEVIGVDQKTLKMRLEVGRDSFDKIINCNLRLVISVAKNYQNRGLSLQDLIQAGSMGLMR 393 Query: 415 AVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEM 474 + +KF+Y RG+KFSTYA WWIRQ+IT+++ +Q+RTIR+PVH++E++ ++ R + QE Sbjct: 394 SAEKFDYSRGFKFSTYAYWWIRQSITKALTEQSRTIRLPVHIVESMTRIRTAWRLLYQEH 453 Query: 475 GREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDS 534 R+PT EE+AE + ++R V + ++ P S++ +G D D + + DT E Sbjct: 454 KRDPTKEEVAEVAGISMTRLRHVTRCSRVPTSLDRCVGKDMDEKFSEIVADTNSESTETI 513 Query: 535 ATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKA 594 + E + VL LTARE +V+R+R+G+D +L EVG+ F ++RER+RQIE KA Sbjct: 514 VSKELFKKDLDRVLDTLTAREKQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQIEMKA 573 Query: 595 LRKLRHPSRSEVLRSFLD 612 +RKLR R++ L+ +LD Sbjct: 574 MRKLRQNHRTQHLKHYLD 591 >UniRef50_Q6AK94 RNA polymerase sigma factor n=3 Tax=Deltaproteobacteria RepID=Q6AK94_DESPS Length = 447 Score = 297 bits (760), Expect = 9e-79, Method: Composition-based stats. Identities = 127/258 (49%), Positives = 185/258 (71%), Gaps = 1/258 (0%) Query: 355 IEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK 414 I ++ ++ ++ AK M+ ANLRLV+SIAK+Y ++GL DLIQEGN+GLM+ Sbjct: 191 IRELFELQAKLEAYSRSIEVAKDTMIRANLRLVVSIAKRYMHQGLTLADLIQEGNLGLMR 250 Query: 415 AVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEM 474 AV +F+Y +G KFSTYA+WWIRQAITR+I D+ RTIR+PVH +E ++ + + +E+ Sbjct: 251 AVFRFDYTKGNKFSTYASWWIRQAITRAILDKTRTIRLPVHFLELRSQFFKAFYALFKEL 310 Query: 475 GREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDS 534 GREPTP E+++ +P DKI +L+ ++EPIS+ETP+GDD DS LGDF+E+ + P ++ Sbjct: 311 GREPTPLEISKTTNLPMDKILSILEASREPISLETPVGDD-DSTLGDFLENQESQSPYEA 369 Query: 535 ATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKA 594 L ++L+ L+ RE K++R+RFGI +YTLEE+GK+F+V+RERIRQIE KA Sbjct: 370 VQNRELSGRVTEILSTLSDREEKIIRLRFGIGEKAEYTLEEIGKRFNVSRERIRQIEKKA 429 Query: 595 LRKLRHPSRSEVLRSFLD 612 L +LRH SR + L+ F+D Sbjct: 430 LNRLRHSSRRDKLKFFVD 447 Score = 78.1 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 72/157 (45%), Gaps = 5/157 (3%) Query: 6 QSQLK-LLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADD 64 Q++LK L+ GK++G +++ +N +P+D+ D IE I + GI+++ + Sbjct: 7 QTELKEKLLETGKKEGCISFDALNKLIPDDVKDPTAIEKIFNFLGAHGIEIVTIEKSGEK 66 Query: 65 LMLA----ENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA 120 L+ E + + E S + E + + Y+REMG +LLT E E + Sbjct: 67 RTLSGEIWEKSEVDLELEIEDGAALSGDEESHESEETTTTYLREMGRFDLLTPEEEAKYS 126 Query: 121 KRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEAR 157 K I G + ++ + ++ +R++ E R Sbjct: 127 KTIRQGFEAIIFAIRGDRSGVQEMVVLCERIDLWEKR 163 >UniRef50_Q7NB90 RNA polymerase sigma factor n=2 Tax=Mycoplasma RepID=Q7NB90_MYCGA Length = 644 Score = 296 bits (758), Expect = 2e-78, Method: Composition-based stats. Identities = 152/404 (37%), Positives = 234/404 (57%), Gaps = 28/404 (6%) Query: 216 LAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRV 275 A K + + T+ AK ++ + E ++ +VFK + + ++ ++ Sbjct: 255 EASSKTKNNDQESIRATKTLLAKAKATKSLSNE--EIIDVFKNYEFTEAEDLEILEELKD 312 Query: 276 MMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSE 335 ++++ ++ + K+ + F +E + I+ +K+ D + Sbjct: 313 --NKIKLEDNVEEKISL---------FRKNQDLSEIDKN-LDDLISKGASTKDKVEDNVK 360 Query: 336 EVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKAR-RAKKEMVEANLRLVISIAKKY 394 L + L + I + + + + R A ++V +NLRLV SIAKKY Sbjct: 361 AF------LGTLGSSKILNFGEEIQIAKLLGSTDPETREYAINQLVTSNLRLVTSIAKKY 414 Query: 395 TNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPV 454 NRGL F+DLIQEG+IGLMKA+ KF Y+ G KFSTYATWWIRQAITR+IADQART+RIPV Sbjct: 415 LNRGLDFVDLIQEGSIGLMKAISKFNYKLGNKFSTYATWWIRQAITRAIADQARTVRIPV 474 Query: 455 HMIETINKLNRISRQMLQEMGREPTPEELAERM-----LMPEDKIRKVLKIAKEPISMET 509 HM+ETINKL + R + Q++GR+PT EEL E M K+ + K+ +EP+S++ Sbjct: 475 HMVETINKLIKTERMLTQQLGRDPTLEELTEAMGGQVNGFTPKKVADIKKLNQEPVSLDK 534 Query: 510 PIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDV-LAGLTAREAKVLRMRFGID-M 567 PIG DE+S DF++D + P + + +++ + LT +E +++RMR+G+ Sbjct: 535 PIGHDEESQFVDFVKDRDILKPDEYTEKLIVTEHINELFINTLTKKEEQIIRMRYGLHPW 594 Query: 568 NTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 + TLEEVG++F+VTRERIRQIE+KALRKL+HPS++ LRSFL Sbjct: 595 HQQMTLEEVGQKFNVTRERIRQIESKALRKLKHPSKNARLRSFL 638 Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 52/121 (42%), Gaps = 3/121 (2%) Query: 2 EQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPE-DIVDSDQIEDIIQMINDMGIQVMEEAP 60 +Q K L+ + K L+ E+ D + +++ +E I++ + D I++ + Sbjct: 264 DQESIRATKTLLAKAKATKSLSNEEIIDVFKNYEFTEAEDLE-ILEELKDNKIKLEDNVE 322 Query: 61 DADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA 120 + L + + ++S S + D V+ ++ +G+ ++L EI IA Sbjct: 323 EKISLFRKNQDLS-EIDKNLDDLISKGASTKDKVEDNVKAFLGTLGSSKILNFGEEIQIA 381 Query: 121 K 121 K Sbjct: 382 K 382 >UniRef50_Q1Q6A4 RNA polymerase sigma factor n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q6A4_9BACT Length = 491 Score = 295 bits (756), Expect = 3e-78, Method: Composition-based stats. Identities = 159/525 (30%), Positives = 253/525 (48%), Gaps = 68/525 (12%) Query: 88 ESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQ 147 E E R D VR+Y+ EM + LLT EI +AK+I + V + A+ + Sbjct: 31 EEEKSRDYDSVRLYLNEMAKIPLLTPAEEIYLAKKIRVMSRLLHRKVLGFDYALEMYIRL 90 Query: 148 YDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSAD 207 + VE+E + + + + V S + + Sbjct: 91 LEGVESESELVQFVELSAAREQNRDAVVEQIHAVTSNIRKSI------------------ 132 Query: 208 DDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFD 267 ++++ + +R + + +I + R A +E+ +S + V ++ Sbjct: 133 -ESNLKDYEKIRRGNIVRDKKLRVHKSILVRKRM---AIKELESISVRSETILPVMRELL 188 Query: 268 YLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWS 327 +++++ +R RT R + Sbjct: 189 EVLSTIADY-NRKRTVHRNFKR-------------------------------------- 209 Query: 328 EKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLV 387 E + +IE + +++K I ++ + A+K E NLRLV Sbjct: 210 -------ELCKELSCDINEIEALFAMPAKELKKIIFSINSIYNEYVMARKRFSEGNLRLV 262 Query: 388 ISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA 447 +SIAKKY RG+ F DLIQEGN GLM+AVDK++YR G+KFSTYATWWI+QAI R+ ++ Sbjct: 263 VSIAKKYRKRGMAFHDLIQEGNTGLMRAVDKYDYRMGFKFSTYATWWIKQAIIRATEEKV 322 Query: 448 RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISM 507 RTIRIPVHM++ INK +++ + E +A P +I ++L+I +PIS+ Sbjct: 323 RTIRIPVHMMDVINKSTYVAKAGQGSSAEKIQLEAIARDTNTPLPEIYRLLQITSQPISL 382 Query: 508 ETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDM 567 ETPIG D ++ DFI+D ++ P+ A L+ VL L+ RE +++++RFGI Sbjct: 383 ETPIGSDGETMFEDFIQDKKIDAPIFLAQRSLLKEQIQKVLDTLSYREREIIKLRFGISD 442 Query: 568 NTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 ++LEE+GK+F++TRERIRQIEA ALRKL+HP RS L FL+ Sbjct: 443 GYTHSLEEIGKRFNITRERIRQIEAIALRKLQHPVRSRKLEGFLE 487 >UniRef50_B9L1K5 RNA polymerase sigma factor n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L1K5_THERP Length = 340 Score = 294 bits (753), Expect = 6e-78, Method: Composition-based stats. Identities = 128/268 (47%), Positives = 187/268 (69%), Gaps = 4/268 (1%) Query: 343 KLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL 402 L+ I E LT E+ ++ +R+ G+ + A + V +NLRLV+SIAK+Y RGL L Sbjct: 73 YLRDIAEAPLLTPEEEVELAKRIKEGDTE---ALQRFVRSNLRLVVSIAKRYVGRGLSLL 129 Query: 403 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 462 DLIQEGNIGLM+AV+KF++RRGY+FSTYATWWIRQAITR+IADQ RTIR+PVHM ++I + Sbjct: 130 DLIQEGNIGLMRAVEKFDWRRGYRFSTYATWWIRQAITRAIADQGRTIRLPVHMTDSITR 189 Query: 463 LNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDF 522 +R + Q+ QE+GR+PTPEE+AE M + +KI ++++ A+ +S++ P+ +++++ LGD Sbjct: 190 YHRTTTQLAQELGRQPTPEEIAEAMSVQPEKIAQIVRAAQRAVSLDQPLSEEDETSLGDL 249 Query: 523 IEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDV 582 I D + P + A +R ++L LT RE VL++R+G+ TL EVG + Sbjct: 250 IADELAQSPEELAEESLMRRDIAEILEMLTPRERLVLQLRYGLSDGEPRTLAEVGDLLGI 309 Query: 583 TRERIRQIEAKALRKLRHPSRSEVLRSF 610 +RER+RQIE +ALRKLR +R E L + Sbjct: 310 SRERVRQIENEALRKLRRIAR-ERLAEY 336 Score = 51.5 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 2/104 (1%) Query: 59 APDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID 118 A + + + +A + A++ S+ +DP+R+Y+R++ LLT E E++ Sbjct: 31 AEERAIEPVEAEIVEPEALLSDAELEDLFRSDPSLASDPLRLYLRDIAEAPLLTPEEEVE 90 Query: 119 IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLI 162 +AKRI++G + + ++ R L DLI Sbjct: 91 LAKRIKEGDTEALQRFVRS--NLRLVVSIAKRYVGRGLSLLDLI 132 >UniRef50_B8G577 RNA polymerase sigma factor n=4 Tax=Chloroflexus RepID=B8G577_CHLAD Length = 314 Score = 293 bits (751), Expect = 1e-77, Method: Composition-based stats. Identities = 106/282 (37%), Positives = 178/282 (63%) Query: 332 DVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIA 391 + +++ + + + ++ E +R++ A +A+ +++ +NLRLV+SIA Sbjct: 31 EQEQQLAQTIAQGRRAAERLTNEPSLHSTEKKRLAAQVAAGEQARAQLINSNLRLVVSIA 90 Query: 392 KKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIR 451 ++Y GL LDLIQEG+IGLM+AVDKF+ RG KFSTYAT+WIRQ+I R+IAD +RT+R Sbjct: 91 RRYQGHGLTLLDLIQEGSIGLMRAVDKFDAGRGLKFSTYATYWIRQSIGRAIADHSRTVR 150 Query: 452 IPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPI 511 +PVH+ E +++L R+ +++ Q++ REPT EELA + +++ + + P S++ Sbjct: 151 LPVHLGERLSRLARLRQELAQQLDREPTLEELANAAGLSVEQVERAEQAGLAPTSLDEAH 210 Query: 512 GDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDY 571 +D L + + D P D + L+A L+ L+ RE +LR+R+G+D + Sbjct: 211 TEDGGGALSEILTDPLQPTPFDEVSEGMLQADVQAALSQLSPRERNILRLRYGLDGEPMH 270 Query: 572 TLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 TLE++G++ +TRER+RQ+E +ALRKLR PS L+ +++D Sbjct: 271 TLEQIGQRLRLTRERVRQLEYEALRKLRDPSLYPQLQGYVND 312 Score = 42.3 bits (98), Expect = 0.063, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 29/69 (42%) Query: 95 TDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAE 154 +D + +Y+ E+G LLT E E +A+ I G + E T +V A Sbjct: 12 SDTIVLYLNEIGAEPLLTFEQEQQLAQTIAQGRRAAERLTNEPSLHSTEKKRLAAQVAAG 71 Query: 155 EARLSDLIT 163 E + LI Sbjct: 72 EQARAQLIN 80 >UniRef50_Q8S9C8 RNA polymerase sigma factor n=1 Tax=Cyanophora paradoxa RepID=Q8S9C8_CYAPA Length = 427 Score = 291 bits (745), Expect = 5e-77, Method: Composition-based stats. Identities = 119/319 (37%), Positives = 182/319 (57%), Gaps = 12/319 (3%) Query: 300 KNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEE-ETGLTIEQV 358 +FI E ++ +L V + + + + + +E + Sbjct: 106 NSFIKEVGSFELLSAEEEIELSRQIRDLVQLETVKKRLAARIGREPREDEWAMAAGTQPG 165 Query: 359 KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRG-LQFLDLIQEGNIGLMKAVD 417 R+ G A+ +V++NLR V+SIAKKY N+ + DLIQEG+IGLMKA + Sbjct: 166 PAFQSRILKGRR----ARARLVQSNLRWVVSIAKKYANKHTMPLQDLIQEGSIGLMKAAE 221 Query: 418 KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE 477 +F+ +G+KF TYATWWIRQAI RS+ DQ RTIR+PVH+ +++ + + +Q+ +GR Sbjct: 222 RFDLDKGFKFLTYATWWIRQAIFRSLQDQGRTIRLPVHVHDSLYLIKKTRQQLASRLGRI 281 Query: 478 PTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSH-----LGDFIEDTTLELPL 532 PTPEELA+ + +P ++ + + A PIS+E+PI + S LGDFIE L+ P Sbjct: 282 PTPEELADELNIPVSRLAFITQAASLPISLESPISSETSSTKARNNLGDFIESECLQ-PD 340 Query: 533 DSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEA 592 + LR +VLA L ARE ++RMR+G+ + TL+E+G+ +TRERIRQIE Sbjct: 341 EQLERTMLREDLENVLATLKARERDIIRMRYGLVDGSPKTLDEIGEIVGLTRERIRQIEQ 400 Query: 593 KALRKLRHPSRSEVLRSFL 611 A+RKL+ P R +L ++ Sbjct: 401 SAMRKLKAPYRKAILCDYI 419 >UniRef50_B5Y8E5 RNA polymerase sigma factor n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y8E5_COPPD Length = 360 Score = 291 bits (745), Expect = 5e-77, Method: Composition-based stats. Identities = 137/292 (46%), Positives = 199/292 (68%), Gaps = 5/292 (1%) Query: 323 NKPWSEKLHDVSEEVHRALQ-KLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVE 381 N + + L + E+V +Q L + + LT EQ + + +R+ E A++E+++ Sbjct: 70 NVSYEQGLPEEEEQVRELMQVYLHDVGQYDLLTAEQERILAQRI---EKNDAAAREELIK 126 Query: 382 ANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITR 441 NLRLVISIAKKYTN+GL F++LIQEGNIGL+KAV+KF++R+GYKFSTYATWWI+QAITR Sbjct: 127 RNLRLVISIAKKYTNKGLSFMELIQEGNIGLIKAVEKFDWRKGYKFSTYATWWIKQAITR 186 Query: 442 SIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIA 501 ++ADQ+R IR PVHM+E ++ + ++ ++GREPT +ELAE + EDK+ + +++ Sbjct: 187 ALADQSRLIRRPVHMVEAYHQFQKKLNELYNQLGREPTVQELAEALGFSEDKVLALKQMS 246 Query: 502 K-EPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLR 560 EP S++ IGD +DS + DF+ DT E R +VL+ L RE +++ Sbjct: 247 NPEPQSLDATIGDQDDSRVQDFVPDTGEGAADKYFWEEERRRVLEEVLSTLNKREREIIE 306 Query: 561 MRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 MR+G+ ++TLEEVG F++TRER+RQIE KALRKLRHP+R LR +LD Sbjct: 307 MRYGLVDGVEHTLEEVGASFNITRERVRQIETKALRKLRHPTRIRKLREYLD 358 Score = 48.5 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 58/136 (42%), Gaps = 19/136 (13%) Query: 27 VNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSS 86 + + L + +D D+I+ + + GI ++ E P + EN + E Sbjct: 34 LINSLNPEDLDVDEID---MFLEEKGISIIPEEP----RIYGENVSYEQG---------- 76 Query: 87 VESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLE 146 + E + + +++Y+ ++G +LLT E E +A+RIE + + + + ++ Sbjct: 77 LPEEEEQVRELMQVYLHDVGQYDLLTAEQERILAQRIEKNDAAAREELIKR--NLRLVIS 134 Query: 147 QYDRVEAEEARLSDLI 162 + + +LI Sbjct: 135 IAKKYTNKGLSFMELI 150 >UniRef50_Q56VT3 RNA polymerase sigma factor (Fragment) n=1 Tax=Hydrogenothermus marinus RepID=Q56VT3_9AQUI Length = 369 Score = 291 bits (744), Expect = 7e-77, Method: Composition-based stats. Identities = 149/369 (40%), Positives = 208/369 (56%), Gaps = 30/369 (8%) Query: 96 DPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEE 155 DPVRMY+REMG ELLTREGEI+IAKRIEDG + ++A P I ++LE +++E ++ Sbjct: 1 DPVRMYLREMGHSELLTREGEIEIAKRIEDGQRSMVQAIAACPPTIAFMLETVEKIENDK 60 Query: 156 ARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDE--------------------- 194 R+ +++ G +D N ++ + PT S +D D+ Sbjct: 61 LRVDEVVDGLID-NLDDIVPPTTDEEDDAESLDDDIDEALDESDDDATDDSDDTFDDVSD 119 Query: 195 --------DEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQ 246 +E +E+ ++ + + FA++R Y + G + Q Sbjct: 120 EDEEEEEEEETKEERAARIQAENLATLKKGTLAHFAKIREWYQALDAALTQGGTQNPEYQ 179 Query: 247 EEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLF 306 + ++ R + + + + +R +++VR ER I LC + MP+ +F+ F Sbjct: 180 KLRDLIAHELLHIRFTARYIEQVCDIVRGFIEQVRQHERQIQNLCTQIGTMPRDHFLKTF 239 Query: 307 TGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMS 366 NET+ W I PWSE L V V Q++ +I E + ++++KDI +RMS Sbjct: 240 PPNETNLDWIKNEIEAGHPWSESLVRVFPSVLDEQQRIIEIVERARVPLDELKDIFKRMS 299 Query: 367 IGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYK 426 GEAK R AK+EMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYK Sbjct: 300 QGEAKMRAAKREMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYK 359 Query: 427 FSTYATWWI 435 FSTYATWWI Sbjct: 360 FSTYATWWI 368 >UniRef50_UPI0001C317B8 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C317B8 Length = 367 Score = 290 bits (742), Expect = 1e-76, Method: Composition-based stats. Identities = 127/266 (47%), Positives = 190/266 (71%), Gaps = 3/266 (1%) Query: 344 LQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLD 403 L+ I + LT ++ D+ +R+ G+ AK++MVE+NLRLV+SIAK Y N+GL FLD Sbjct: 103 LKDIGKVRLLTAQEEVDLAKRIERGD---LDAKQKMVESNLRLVVSIAKNYRNQGLPFLD 159 Query: 404 LIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKL 463 LIQEG +GL++A +KF+YR+G+KFSTYATWWIRQAI R++AD+ARTIRIPVH++E +NK+ Sbjct: 160 LIQEGTLGLVRAAEKFDYRKGFKFSTYATWWIRQAIARALADKARTIRIPVHVVEKLNKI 219 Query: 464 NRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFI 523 R R+++ E+GREPT EE+A+ + +++ + + A+ P+S+E P+GD+E+S G FI Sbjct: 220 GRAERKLVTELGREPTAEEIADVTGIDPEEVDSIKRSAQAPVSLEKPVGDEEESEFGQFI 279 Query: 524 EDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVT 583 D E P + A + A + L L+ RE +VL +R+G+ TL+EVG+ F+VT Sbjct: 280 ADERAESPYERAAEILTKEALREALENLSYRERRVLELRYGLGGEHPRTLDEVGRTFNVT 339 Query: 584 RERIRQIEAKALRKLRHPSRSEVLRS 609 RERIRQIE ++L+KL+ + ++ LR Sbjct: 340 RERIRQIENQSLKKLQSLAEAQKLRD 365 Score = 83.1 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 75/156 (48%), Gaps = 4/156 (2%) Query: 7 SQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLM 66 ++K LV RG + G LTYAE+ + E +D +ED+ + I+++EE A Sbjct: 10 EEIKGLVNRGTQLGVLTYAEIARAVSELDLDESDVEDLHGFLERAEIELVEEIDPA--TT 67 Query: 67 LAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDG 126 + + ++++ + TTD ++++++++G V LLT + E+D+AKRIE G Sbjct: 68 ASNQVERAPDRRRGRRARTALDLKPDMTTDSLQLFLKDIGKVRLLTAQEEVDLAKRIERG 127 Query: 127 INQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLI 162 + + E + ++ + DLI Sbjct: 128 DLDAKQKMVES--NLRLVVSIAKNYRNQGLPFLDLI 161 >UniRef50_D1CF84 RNA polymerase sigma factor n=2 Tax=Bacteria RepID=D1CF84_THET1 Length = 363 Score = 289 bits (740), Expect = 2e-76, Method: Composition-based stats. Identities = 127/287 (44%), Positives = 194/287 (67%), Gaps = 5/287 (1%) Query: 328 EKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLV 387 E+L + L++I LT ++ ++ +R+ G+ + A + V ANLRLV Sbjct: 80 EELENDGYLTDAVKIYLREIGSVPLLTPKEEVELAKRIEKGDTE---ALQRFVLANLRLV 136 Query: 388 ISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA 447 +SIAK+Y RGL LDLIQEGNIGLM+AV KF++R+G++FSTYATWWIRQAITR+I D++ Sbjct: 137 VSIAKRYVGRGLPLLDLIQEGNIGLMRAVQKFDWRKGHRFSTYATWWIRQAITRAIGDKS 196 Query: 448 RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISM 507 R IR+P H+ E +N++NRI +Q+ Q + REPTPEE+AE+ +++R++L ++P+S+ Sbjct: 197 REIRLPAHINEELNRINRIRQQLSQTVNREPTPEEIAEKAGTSPERVRELLGYLQQPVSL 256 Query: 508 ETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAG-LTAREAKVLRMRFGID 566 +TP+G++ DS LG+F+ D P + AT E L+ VL LT RE +VL++R+G+ Sbjct: 257 DTPVGEEADSTLGEFVPDVRA-NPEEEATDEVLKTEMDRVLDEVLTPREKRVLQLRYGLG 315 Query: 567 MNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 Y+LE+VG++ VTRER+RQ+E +AL KLR L ++++ Sbjct: 316 DGHTYSLEKVGRELGVTRERVRQLEKQALEKLRRGPAIRKLAEYMEE 362 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 70/159 (44%), Gaps = 12/159 (7%) Query: 4 NPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDAD 63 + +K L+T GK +G++T +V + +PE + D + + GI+V+ E Sbjct: 8 ELEEAIKRLITLGKSKGHVTERDVFELVPEAEDNIDCFNQVSDALIREGIEVLPE----- 62 Query: 64 DLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRI 123 E T E E G TD V++Y+RE+G+V LLT + E+++AKRI Sbjct: 63 -----ETTEAEAGPEEDLDQTLEELENDGYLTDAVKIYLREIGSVPLLTPKEEVELAKRI 117 Query: 124 EDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLI 162 E G + + ++ R L DLI Sbjct: 118 EKGDTEALQRFVLA--NLRLVVSIAKRYVGRGLPLLDLI 154 >UniRef50_Q39515 Chloroplast RNA polymerase sigma subunit n=1 Tax=Cyanidium caldarium RepID=Q39515_CYACA Length = 591 Score = 288 bits (736), Expect = 7e-76, Method: Composition-based stats. Identities = 114/256 (44%), Positives = 174/256 (67%) Query: 358 VKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD 417 D ++ R+AK+ MV ANLRLV+SIAK+Y+NRG+ DLIQEG+IGL++ V+ Sbjct: 335 YGDDVEKLREHIRDGRKAKERMVTANLRLVVSIAKRYSNRGVALQDLIQEGSIGLIRGVE 394 Query: 418 KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE 477 KF+ RG++FSTYATWWIRQ+ITR+I+D +R+IR+PVH+ +TI+ + + ++ + E+GR Sbjct: 395 KFDAERGFRFSTYATWWIRQSITRAISDSSRSIRLPVHVHDTISLIRKQTKALQVELGRP 454 Query: 478 PTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATT 537 P+ EE+ E + + K R V++ ++ +S+ETP+ +D H E ++ + Sbjct: 455 PSEEEICESVGIDRAKYRLVMECSRNIVSLETPLRSGDDVHFLGESLIAPEERAEENCSR 514 Query: 538 ESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRK 597 ++LR + VL L+ RE +V+RMRFG+ TLEEVG +F+VTRERIRQIE+KAL+K Sbjct: 515 DTLRESIEKVLHCLSTREREVIRMRFGLTDGRPRTLEEVGSRFNVTRERIRQIESKALKK 574 Query: 598 LRHPSRSEVLRSFLDD 613 LR P+ + L +L + Sbjct: 575 LRTPAENNFLDEYLGE 590 Score = 42.7 bits (99), Expect = 0.049, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 29/70 (41%) Query: 54 QVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTR 113 +V + + E+ D S + D +R Y+RE+G +LL Sbjct: 234 EVYSNSETEEAESQIESDELLDFIVEEVDPADVDLSTVEAKDDTIRSYLREIGRYQLLHP 293 Query: 114 EGEIDIAKRI 123 EI+++K++ Sbjct: 294 GEEIELSKQV 303 >UniRef50_D1J322 Whole genome shotgun sequence of line PN40024, scaffold_24.assembly12x (Fragment) n=3 Tax=Magnoliophyta RepID=D1J322_VITVI Length = 575 Score = 287 bits (735), Expect = 8e-76, Method: Composition-based stats. Identities = 102/283 (36%), Positives = 162/283 (57%), Gaps = 4/283 (1%) Query: 329 KLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVI 388 KL + E++ + K + RR + G R K +M+++N+RLVI Sbjct: 295 KLEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYG----IRCKDKMIKSNIRLVI 350 Query: 389 SIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQAR 448 SIAK Y G+ DL+QEG GL++ +KF+ +G+KFSTYA WWI+QA+ +S++DQ+R Sbjct: 351 SIAKNYQGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR 410 Query: 449 TIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISME 508 TIR+P HM+E ++ +Q+ E GR P EE+AE + ++ VL K P S++ Sbjct: 411 TIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLNAVLLTPKAPRSLD 470 Query: 509 TPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMN 568 IG +++ + I D E + + +R VL L RE +V+R R+G++ Sbjct: 471 QKIGINQNLKPSEVIADPDAETAEELLIKQFMREDLEKVLNSLNPREKQVIRWRYGLEDG 530 Query: 569 TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 TL+E+G+ V+RERIRQIE+ A RKL++ R++ L+ +L Sbjct: 531 RTKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYL 573 >UniRef50_B8HRG7 RNA polymerase sigma factor n=9 Tax=Cyanobacteria RepID=B8HRG7_CYAP4 Length = 455 Score = 286 bits (733), Expect = 1e-75, Method: Composition-based stats. Identities = 124/298 (41%), Positives = 185/298 (62%), Gaps = 2/298 (0%) Query: 316 FNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI-EEETGLTIEQVKDINRRMSIGEAKARR 374 + +A L + E +L+ + E + + + + + R Sbjct: 156 IHDRLAAQLGHRPPLERWAREAGVVAGQLKTLLAEGKQAWATAIGMMVGELDQIQKEGVR 215 Query: 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 434 AK+ M++ANLRLV+S+AKKY NRGL+ LDLIQEG +GL +AV+KF+ +GY+FSTYA WW Sbjct: 216 AKEHMIQANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWW 275 Query: 435 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKI 494 IRQ ITR+IA Q+RTIR+PVH+ E +NK+ + R++ QE G P+ E++A + M ++ Sbjct: 276 IRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKGHTPSIEDIATELEMTVPQV 335 Query: 495 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAR 554 R++L +S+ET +G D+D+ LGD +E L P + ESL +LA LT+R Sbjct: 336 RELLVRVPRSVSLETKVGKDKDTELGDLLETDDL-SPEEMMMRESLHRELEKLLADLTSR 394 Query: 555 EAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 E V+ MRFG+ Y+L ++G+ D++RER+RQIEAKAL+KLR P R +R +LD Sbjct: 395 ERDVISMRFGLGDGHAYSLADIGRALDLSRERVRQIEAKALQKLRQPKRRNRVRDYLD 452 Score = 49.2 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 1/100 (1%) Query: 32 PEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEI 91 P DS ED ++ + + G ++ + + ED E + + Sbjct: 37 PRSEDDSVLEEDSLETLAEPG-ELDLLVEANGLEANGDGSLLEDWPEEDVEEAVQLAGRG 95 Query: 92 GRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQ 131 RTTD VR+Y++E+G V LL R+ E+ A++++ + V+ Sbjct: 96 QRTTDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYMRLVE 135 >UniRef50_B1AIY8 RNA polymerase sigma factor n=15 Tax=Ureaplasma RepID=B1AIY8_UREP2 Length = 448 Score = 286 bits (733), Expect = 1e-75, Method: Composition-based stats. Identities = 130/301 (43%), Positives = 189/301 (62%), Gaps = 16/301 (5%) Query: 327 SEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRL 386 S V + + L L E + + E+ + +S + + K ++ +N+RL Sbjct: 147 STTTEKVDDGIKAYLGVL--GESKMLRSDEETEYAKMVISDDPSLVKIGKNQLYTSNMRL 204 Query: 387 VISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQ 446 V SIAKKY NRGL DLIQEG+ GL+KA+DKF++ +G+KFSTYATWWIRQ+ITR+IADQ Sbjct: 205 VTSIAKKYLNRGLDLEDLIQEGSSGLLKAIDKFDHEKGHKFSTYATWWIRQSITRAIADQ 264 Query: 447 ARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERML------------MPEDKI 494 AR IRIPVHM+ETINKL + R ++QE+GR+PT EE+A+ M + K+ Sbjct: 265 ARQIRIPVHMVETINKLTKAERNLIQELGRDPTAEEIAQAMNKVSQAKNQKEQLITAQKV 324 Query: 495 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAG-LTA 553 ++ K+ +P+S++ IG DE+S DFI D + P ++L +++ L Sbjct: 325 VEIKKLNVDPVSLDKQIGHDEESQFSDFISDDEIISPEKYTEKKALNDQINEMFEKVLND 384 Query: 554 REAKVLRMRFGID-MNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 E +V++MR+G+ YTLEEVG+ VTRER RQIE+KA+RKL+HPS++ LRSF+ Sbjct: 385 NEQRVIKMRYGLLPFERPYTLEEVGEYLGVTRERARQIESKAIRKLKHPSKTAKLRSFIG 444 Query: 613 D 613 + Sbjct: 445 E 445 >UniRef50_Q03066 RNA polymerase sigma-C factor n=22 Tax=Cyanobacteria RepID=RPSC_ANASP Length = 416 Score = 286 bits (733), Expect = 1e-75, Method: Composition-based stats. Identities = 120/268 (44%), Positives = 185/268 (69%), Gaps = 8/268 (2%) Query: 345 QQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDL 404 ++ E +T+E+++ + +++ ++K+ M++ANLRLV+S+AKKY NRGL+ LDL Sbjct: 154 RRWAEIAKMTVEELEKM-------QSQGLQSKEHMIKANLRLVVSVAKKYQNRGLELLDL 206 Query: 405 IQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLN 464 +QEG +GL +AV+KF+ +GY+FSTYA WWIRQ ITR+IA +RTIR+PVH+ E +NK+ Sbjct: 207 VQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPVHITEKLNKIK 266 Query: 465 RISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIE 524 + R++ QE GR PT E+LA + M ++R+VL +S+ET +G D+D+ LG+ +E Sbjct: 267 KAQRKIAQEKGRTPTLEDLAIELDMTPTQVREVLLRVPRSVSLETKVGKDKDTELGELLE 326 Query: 525 DTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTR 584 T P + ESL+ +LA LT+RE V+ MRFG+ Y+L E+G+ D++R Sbjct: 327 -TDGVTPEEMLMRESLQRDLQHLLADLTSRERDVILMRFGLADGHPYSLAEIGRALDLSR 385 Query: 585 ERIRQIEAKALRKLRHPSRSEVLRSFLD 612 ER+RQIE+KAL+KLR P R ++R +L+ Sbjct: 386 ERVRQIESKALQKLRQPKRRNLIRDYLE 413 Score = 42.3 bits (98), Expect = 0.059, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 3/71 (4%) Query: 58 EAPDADDLMLAENTADEDAAE---AAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTRE 114 +A D D + + + ++ E AAA + S R+TD VR+Y++E+G V LL R+ Sbjct: 19 QALDPDIAIDDSDLSVDEIQELEIAAADPATFGASANRRSTDLVRLYLQEIGRVRLLGRD 78 Query: 115 GEIDIAKRIED 125 E+ A++++ Sbjct: 79 EEVSEAQKVQR 89 >UniRef50_C9XJA1 RNA polymerase sigma factor n=5 Tax=Clostridium difficile RepID=C9XJA1_CLODC Length = 301 Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats. Identities = 120/270 (44%), Positives = 183/270 (67%), Gaps = 5/270 (1%) Query: 343 KLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL 402 L++IEE L+ + ++ + + + AK++ + +N RLV+SIAK+Y + L Sbjct: 34 YLKEIEEYKMLSAGEEVELAKEIIN---SSSVAKEKFINSNYRLVVSIAKRYKRDSIDML 90 Query: 403 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 462 DLIQ GNIGL+KAV+K++Y++GYKFSTYATWWI+Q+ITR I D TIRIP+H+ + IN Sbjct: 91 DLIQAGNIGLIKAVEKYDYKKGYKFSTYATWWIKQSITRYIDDCENTIRIPIHLHQRINF 150 Query: 463 LNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDF 522 + + +++L + REPT +E+A+ + DK+ ++L+ K +S++TP+ +DEDS L +F Sbjct: 151 VKKKKQELLNVLLREPTIDEIADACGLEVDKVLELLRRDKNVVSLDTPLKEDEDSSLVEF 210 Query: 523 IEDTTL--ELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQF 580 I ++ + +L+ ++L GL +E +VLRMRFGID + TLE++GK F Sbjct: 211 IPSDADFKDVVIHEVEQHNLKEKIEELLTGLGEQEQQVLRMRFGIDDDDPKTLEQIGKVF 270 Query: 581 DVTRERIRQIEAKALRKLRHPSRSEVLRSF 610 VTRERIRQIEAKA+RKLRHPS+ + L+ F Sbjct: 271 GVTRERIRQIEAKAIRKLRHPSKLKQLKHF 300 >UniRef50_B5YKU3 RNA polymerase sigma factor n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKU3_THEYD Length = 427 Score = 286 bits (731), Expect = 2e-75, Method: Composition-based stats. Identities = 147/398 (36%), Positives = 233/398 (58%), Gaps = 12/398 (3%) Query: 214 PELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSM 273 P L++++ L + + + Q++I +LS VF + K + L + Sbjct: 39 PVLSKQEEKNLAKTITDKKMELIKELLHIPFVQKKIYELSNVFS--KNPEKAKEMLDDEE 96 Query: 274 RVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDV 333 + +++++ ER I + M +K F ++ + + ++ Sbjct: 97 EIDIEQIK--ERFIKVSENIKKIMRRKKTTKEF------LKKIFDIPLRDELTNMFVEEL 148 Query: 334 SEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKK 393 ++ R + K + ++ TG+T E+ D + + AK +M+E+NL+LV+SIAKK Sbjct: 149 -DKFRREIIKGENLQPITGMTNEEFLDHFMTIKKIFNEFTEAKNKMIESNLKLVVSIAKK 207 Query: 394 YTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIP 453 YT RGL DLIQEGNIGLMKAV+KFEY++G+KFSTY+TWWIRQ+I R+IA+ ++TIRIP Sbjct: 208 YTGRGLNLEDLIQEGNIGLMKAVEKFEYKKGFKFSTYSTWWIRQSINRAIAEHSKTIRIP 267 Query: 454 VHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGD 513 VH+I+ I K+N+I R++ Q EP EE++ + +P DKI L I+KEP+S++ + D Sbjct: 268 VHVIDNICKINKIYRELYQNSENEPDIEEISLNLNIPSDKIADFLAISKEPVSIDMSLRD 327 Query: 514 DEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTL 573 D DS L +FIED P + A + L+ V + L+ RE ++L R+GI+ +L Sbjct: 328 D-DSLLKEFIEDMNSPNPYEEALHDDLKHLIEKVFSLLSKREKEILMRRYGINEEKPKSL 386 Query: 574 EEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 +EVGK+F V+RERIRQIE +A+RKL+ R + LR F+ Sbjct: 387 DEVGKEFSVSRERIRQIELRAMRKLKRLCRLKWLREFI 424 Score = 45.0 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 37/291 (12%), Positives = 99/291 (34%), Gaps = 9/291 (3%) Query: 79 AAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYP 138 + ++ T D + +Y + + + +L+++ E ++AK I D ++ + P Sbjct: 9 EELAEKDQIVNKTSPTYDSLNLYFKCISSFPVLSKQEEKNLAKTITDKKMELIKELLHIP 68 Query: 139 EAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDE 198 + E + + +++ + + E+ + + + + + + Sbjct: 69 FVQKKIYELSNVFSKNPEKAKEMLDDEEEIDIEQI---KERFIKVSENIKKIMRRKKTTK 125 Query: 199 EDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQ 258 E + E+ + R + + + G ++ + + + ++F + Sbjct: 126 EFLKKIFDIPLRDELTNMFVEELDKFRREIIKGENLQPITGMTNEEFLDHFMTIKKIFNE 185 Query: 259 F-----RLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCK-MPKKNFITLFTGNETS 312 F +++ +V+ + R E LI + + K + K + F + S Sbjct: 186 FTEAKNKMIESNLKLVVSIAKKYTGRGLNLEDLIQEGNIGLMKAVEKFEYKKGFKFSTYS 245 Query: 313 DTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINR 363 W +I K + V + K+ +I E E DI Sbjct: 246 TWWIRQSINRAIAEHSKTIRIPVHVIDNICKINKIYRELYQNSENEPDIEE 296 >UniRef50_A0LLA1 RNA polymerase sigma factor n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LLA1_SYNFM Length = 433 Score = 285 bits (729), Expect = 3e-75, Method: Composition-based stats. Identities = 132/257 (51%), Positives = 185/257 (71%), Gaps = 1/257 (0%) Query: 356 EQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKA 415 + +++ R AK+EMV+ANLRLV+SIAK+Y RG+ F DLIQEGN+GL+KA Sbjct: 178 ARYREMLVRSRAIMLAIDSAKQEMVKANLRLVLSIAKRYRGRGMSFDDLIQEGNLGLLKA 237 Query: 416 VDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMG 475 V +F++ +G +FSTYATWW+RQ+I R I D+ RTIR+PVH IE N ++ ++L+E+G Sbjct: 238 VGRFDHTKGNRFSTYATWWVRQSIIRGIYDKTRTIRLPVHFIELKNLFFKVFYELLKELG 297 Query: 476 REPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSA 535 REP+P+E+AER +P DK++ VL +A +PIS+ETPIG+DE LGDFIED P++ Sbjct: 298 REPSPQEIAERAKLPLDKVQMVLTLAAQPISLETPIGEDEQR-LGDFIEDERAASPMEEC 356 Query: 536 TTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKAL 595 + L T +L+ L RE K+LR+RFGID TLE++GK F V++ERIRQIE KAL Sbjct: 357 SDRELAEITRSLLSSLQPREEKILRLRFGIDGQPAETLEKIGKTFKVSKERIRQIEKKAL 416 Query: 596 RKLRHPSRSEVLRSFLD 612 RKLR+P+R L++F++ Sbjct: 417 RKLRNPNRQSCLKTFME 433 Score = 43.4 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 53/119 (44%), Gaps = 1/119 (0%) Query: 34 DIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGR 93 D++D +++ ++ ++G++ + + + E A+ + + + Sbjct: 26 DLIDDQVLDERLKR-ANLGLEEDRDMEGPEAEDILEAAAEREEEDEDLLPEGVTAAGEDF 84 Query: 94 TTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVE 152 D V Y++E+ + LLT+E E ++A+ I +G ++ V E + + +V+ Sbjct: 85 EEDHVTCYLKEVSSYPLLTQERETELAQVIREGQEELVRMVCECSTEDRLAADLHQKVQ 143 >UniRef50_Q7U3K5 RNA polymerase sigma factor n=21 Tax=Cyanobacteria RepID=Q7U3K5_SYNPX Length = 467 Score = 284 bits (726), Expect = 8e-75, Method: Composition-based stats. Identities = 120/300 (40%), Positives = 182/300 (60%), Gaps = 3/300 (1%) Query: 313 DTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQ-IEEETGLTIEQVKDINRRMSIGEAK 371 + + W K + + H +L +LQQ IE G + R + Sbjct: 165 EELQRREANQHSHWPTK-QEWARAAHLSLAELQQRIEAGYGAWAREANLEARELKTALRN 223 Query: 372 ARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYA 431 RRAK M++ANLRLV+++AKKY RG++ LDL+QEG +GL +AV+KF+ RG++FSTYA Sbjct: 224 GRRAKDHMIQANLRLVVAVAKKYQQRGMELLDLVQEGTLGLERAVEKFDPTRGFRFSTYA 283 Query: 432 TWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPE 491 WWIRQ +TR+IA Q+RTIR+PVH+ E +N++ R +++ GR + +LA + + E Sbjct: 284 YWWIRQGMTRAIATQSRTIRLPVHVTEKLNRIKRAQQEIATNEGRIASIADLARALKLSE 343 Query: 492 DKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGL 551 D +R+ L +S++T +G D+D+ LGD IED P + T + L +L L Sbjct: 344 DTVRQTLARVPRSVSLDTRVGRDQDTQLGDLIEDGKA-TPEQTLTHDELHNDLEHLLDEL 402 Query: 552 TAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 T+REA VLR RFG++ +T TL ++G+ ++RER+RQIE +AL KLR P R +R ++ Sbjct: 403 TSREAAVLRRRFGLEDDTPQTLAQIGEALKLSRERVRQIETRALLKLRQPQRRSKVRDYI 462 Score = 42.7 bits (99), Expect = 0.047, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 38/88 (43%) Query: 40 QIEDIIQMINDMGIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVR 99 Q E + + GIQ D ++ + + + TTD +R Sbjct: 55 QFEPCVNRADPEGIQRFCRTDDGCGEPCRQSNCSTPLPRQPRRTGETRDRRSRSTTDLLR 114 Query: 100 MYMREMGTVELLTREGEIDIAKRIEDGI 127 +Y++++G V+LLT E E+ +A+ ++ Sbjct: 115 LYLQDIGRVDLLTNEEEVTLARLVQRRE 142 >UniRef50_B1VAH4 RNA polymerase sigma factor n=5 Tax=Acholeplasmataceae RepID=B1VAH4_PHYAS Length = 476 Score = 283 bits (724), Expect = 1e-74, Method: Composition-based stats. Identities = 134/268 (50%), Positives = 192/268 (71%), Gaps = 7/268 (2%) Query: 349 EETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEG 408 +E L+ ++VK + ++ +A +AK +VE+N RLV+SIAK+Y RG+ FLDLIQEG Sbjct: 213 QEIDLSDQEVKQLESQII----QANQAKDVLVESNYRLVVSIAKRYIGRGVLFLDLIQEG 268 Query: 409 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISR 468 N+GLM+AVDKF+Y++G + STYAT+W+ Q +TR+IADQARTIRIPVH++ETINK++ +R Sbjct: 269 NMGLMRAVDKFDYQKGLRLSTYATYWVIQGVTRAIADQARTIRIPVHIVETINKMSLCTR 328 Query: 469 QMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGD--DEDSHLGDFIEDT 526 ++ QE+ ++PT EELAE+M +P DK+R + I K+PIS+E P + ++++ LGDFI D Sbjct: 329 KLTQELKKKPTIEELAEKMNIPADKLRSIQYIEKKPISLEVPPAENKEDETSLGDFISDP 388 Query: 527 TLELPLDSATTESLRAATHDVLA-GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRE 585 + P + E + +VL LT RE KVL+MR+G YTLEE+G F VTRE Sbjct: 389 NVLSPHEYMMKEVTQKLLDEVLENTLTEREEKVLKMRYGFLDGKVYTLEEIGNLFGVTRE 448 Query: 586 RIRQIEAKALRKLRHPSRSEVLRSFLDD 613 RIRQIE+KALR+LR P++ L+S + Sbjct: 449 RIRQIESKALRRLRTPAKQSKLKSLYQN 476 Score = 44.6 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 71 TADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGE 116 D + + + + ++ + S+I + D VRMY++E+G + LL++E E Sbjct: 146 EIDPEDDKFSKENITKINSDI-KIDDSVRMYLKEIGRIPLLSKEEE 190 >UniRef50_O22455 Sigma factor 2 n=8 Tax=core eudicotyledons RepID=O22455_ARATH Length = 574 Score = 282 bits (722), Expect = 2e-74, Method: Composition-based stats. Identities = 99/283 (34%), Positives = 158/283 (55%), Gaps = 4/283 (1%) Query: 329 KLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVI 388 KL + E+ + + K + +R+ G K +M+++N+RLVI Sbjct: 292 KLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHG----TLCKDKMIKSNIRLVI 347 Query: 389 SIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQAR 448 SIAK Y G+ DL+QEG GL++ +KF+ +G+KFSTYA WWI+QA+ +S++DQ+R Sbjct: 348 SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSR 407 Query: 449 TIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISME 508 IR+P HM+E ++ +Q+ E G+ P EE+AE + ++ VL K P S++ Sbjct: 408 MIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLD 467 Query: 509 TPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMN 568 IG +++ + I D D E +R VL L RE +V+R RFG++ Sbjct: 468 RKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDG 527 Query: 569 TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 TL+E+G+ V+RER+RQIE+ A RKL++ R+ L+ +L Sbjct: 528 RMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYL 570 >UniRef50_C7M2H3 RNA polymerase sigma factor n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M2H3_ACIFD Length = 337 Score = 282 bits (722), Expect = 3e-74, Method: Composition-based stats. Identities = 127/296 (42%), Positives = 181/296 (61%), Gaps = 8/296 (2%) Query: 316 FNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRA 375 + + K +L + A ++L +E E + + + A Sbjct: 48 IGSHELLTKDDEAELGRRMDRARDAQRQLDAGVKEPARRAELEELV--------RQGEEA 99 Query: 376 KKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 435 K+ ++ANLRLV+SIAK+Y GL LDLIQEGN+GL+ AV+KF++R+G+KFSTYATWWI Sbjct: 100 KRAFIQANLRLVVSIAKRYQASGLPLLDLIQEGNMGLIHAVEKFDWRKGFKFSTYATWWI 159 Query: 436 RQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIR 495 RQAITR IA+ RTIR+PVH ++++++ R Q+ +GR PT ELA + +P DK+ Sbjct: 160 RQAITRGIANTGRTIRLPVHAGDSLSRVQRAQVQLEVRLGRAPTVRELAAEVDLPYDKLV 219 Query: 496 KVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTARE 555 + L+ EP+S+ P+ DD D+ LGD +ED+ P D A L + +LA L RE Sbjct: 220 EALRFRAEPVSLSEPLRDDGDAELGDVVEDSQSATPFDVAAEHLLPSEVSRLLAPLDGRE 279 Query: 556 AKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 ++LR+R+G+D TLEEVG+ F +TRERIRQIEA+A+ KLRHPS R L Sbjct: 280 REILRLRYGLDRGEPRTLEEVGEYFHLTRERIRQIEARAMSKLRHPSADIGARDLL 335 >UniRef50_B0M9H5 RNA polymerase sigma factor n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0M9H5_9FIRM Length = 347 Score = 282 bits (721), Expect = 3e-74, Method: Composition-based stats. Identities = 134/303 (44%), Positives = 207/303 (68%), Gaps = 6/303 (1%) Query: 312 SDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAK 371 + + + A + +E + V E+ L +I L+ +Q + + + + EA Sbjct: 50 NIEFSDFTAAGHADTAEAENAVMED--SVKAYLHRIGRIPLLSKDQEERLAKEI---EAG 104 Query: 372 ARRAKKEMVEANLRLVISIAKKYT-NRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY 430 ++ AK +M+ +NLRLV+S+AK+Y G+ LDLIQEGNIGLMKAVDKF+YRRGYKFSTY Sbjct: 105 SQSAKDKMINSNLRLVVSVAKRYAAGSGMALLDLIQEGNIGLMKAVDKFDYRRGYKFSTY 164 Query: 431 ATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMP 490 A WWIRQ++TR+IADQARTIRIPVHM E + K++ +R+ L+E GREP +ELAE M + Sbjct: 165 AMWWIRQSVTRAIADQARTIRIPVHMKEKMGKVSGAARKFLEENGREPNADELAELMEIS 224 Query: 491 EDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAG 550 D++ +++++ + +S+++P+G++ED+ L +F+ D ++ +A L +++L+ Sbjct: 225 RDQMDEIMRLYSDTVSLDSPVGEEEDAMLMNFVADESMPEQYQTAEQGILSEQINEILSE 284 Query: 551 LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSF 610 LT RE +LR+RFG N +TLEEVG+++ VTRERIRQIE KALRKL+ ++ LR++ Sbjct: 285 LTEREQTILRLRFGFVENRIWTLEEVGREYHVTRERIRQIEGKALRKLKMKKETKSLRAY 344 Query: 611 LDD 613 ++D Sbjct: 345 IED 347 Score = 47.7 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 41/315 (13%), Positives = 100/315 (31%), Gaps = 53/315 (16%) Query: 6 QSQLKLLV-TRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADD 64 + +++ L+ G+ + EV+ + + + + +I + D I+ + Sbjct: 4 EERIQELIKAAGQNHNVIQLDEVDQVF-DKSLSEQEFDYVIGRLKDQNIEFSD------- 55 Query: 65 LMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIE 124 AA + E+E D V+ Y+ +G + LL+++ E +AK IE Sbjct: 56 -------------FTAAGHADTAEAENAVMEDSVKAYLHRIGRIPLLSKDQEERLAKEIE 102 Query: 125 DGINQVQCSVAEYPE----------AITYLLEQYDRVEAEEARLSDLITGF--------- 165 G + + A + D ++ L + F Sbjct: 103 AGSQSAKDKMINSNLRLVVSVAKRYAAGSGMALLDLIQEGNIGLMKAVDKFDYRRGYKFS 162 Query: 166 ----------VDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPE 215 V + V + + + E+ + D+ + E Sbjct: 163 TYAMWWIRQSVTRAIADQARTIRIPVHMKEKMGKVSGAARKFLEENGREPNADELAELME 222 Query: 216 LAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRV 275 ++R++ E+ Y T G + +++ + + L + Sbjct: 223 ISRDQMDEIMRLYSDTVSLDSPVGEEEDAM--LMNFVADESMPEQYQTAEQGILSEQINE 280 Query: 276 MMDRVRTQERLIMKL 290 ++ + +E+ I++L Sbjct: 281 ILSELTEREQTILRL 295 >UniRef50_D1IHF7 Whole genome shotgun sequence of line PN40024, scaffold_40.assembly12x (Fragment) n=2 Tax=rosids RepID=D1IHF7_VITVI Length = 561 Score = 282 bits (721), Expect = 3e-74, Method: Composition-based stats. Identities = 99/287 (34%), Positives = 173/287 (60%), Gaps = 10/287 (3%) Query: 329 KLHDVSEEVHRALQK---LQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLR 385 +L +V + + L++ + + E GL+ + ++ R++++++ ANLR Sbjct: 279 RLEEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLH-------SGNRSRQKLIYANLR 331 Query: 386 LVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIAD 445 +V+ IAK+Y RGL DL+QEG++GLM +V+KF+ G +F++YA WWIRQA+ ++I Sbjct: 332 MVVHIAKQYQGRGLNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQ 391 Query: 446 QARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPI 505 +RTIR+P +M + K+ R +QE +PT EE+AER+ + +K++++L + P+ Sbjct: 392 HSRTIRLPENMYSLLGKVKEAKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPL 451 Query: 506 SMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGI 565 SM+ P+ D+D+ + DT +E+P S + +R ++L LT +E +++R+RFGI Sbjct: 452 SMQQPVWADQDTTFQEVTADTGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGI 511 Query: 566 DMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 TL E+G F ++ER+RQ+E +AL KL+ S L S+ D Sbjct: 512 GDGIPRTLSEIGLVFGFSKERVRQLEQRALHKLKQCLSSHGLESYTD 558 >UniRef50_Q0SG50 RNA polymerase sigma factor n=1 Tax=Rhodococcus jostii RHA1 RepID=Q0SG50_RHOSR Length = 520 Score = 281 bits (720), Expect = 4e-74, Method: Composition-based stats. Identities = 121/286 (42%), Positives = 188/286 (65%), Gaps = 10/286 (3%) Query: 331 HDVSEEVHRAL--QKLQQIEEETG--LTIEQVKDINRRMSIGEAKARRAKKEMVEANLRL 386 +++E + L L + E+ G L+ ++ +D++R G+ AK+ +EANLRL Sbjct: 239 SELAERIEAGLYAAYLLKEAEDAGEKLSDQRHRDLHRVCRDGQ----HAKRRFLEANLRL 294 Query: 387 VISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQ 446 V+SIA++Y RGL LDL+QEGN+GL++AV+KF+Y+ G+KFSTYATWWIRQAITR++ADQ Sbjct: 295 VVSIARRYQGRGLDLLDLVQEGNLGLIRAVEKFDYKTGFKFSTYATWWIRQAITRALADQ 354 Query: 447 ARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPIS 506 +R IRIPVHM+E I++L + ++ +E GREPTP ELA + + I + K + +S Sbjct: 355 SRVIRIPVHMVEQIDQLGKERARLTKETGREPTPSELATALDTTIEHIGDLEKYDQRVLS 414 Query: 507 METPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGID 566 ++ + D+ + DF ED + + A VL+ L+ R+A+V+R+R+G+ Sbjct: 415 LDV-LTDNAEHDGLDF-EDDLAVVAEEVAERRRFYETLESVLSPLSERDAQVIRLRYGLT 472 Query: 567 MNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 + YTL+E+GK + VTRERIRQIE+K L+ ++ S +++LR F D Sbjct: 473 GSDPYTLDEIGKIYGVTRERIRQIESKLLKAMKEESVADILRPFYD 518 >UniRef50_D1C9N7 RNA polymerase sigma factor n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C9N7_SPHTD Length = 359 Score = 281 bits (720), Expect = 5e-74, Method: Composition-based stats. Identities = 110/293 (37%), Positives = 175/293 (59%), Gaps = 9/293 (3%) Query: 317 NAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGE------- 369 +A +++ S+ ++ +V + E E + + +R+ GE Sbjct: 57 ESADLIDQATSDAVYRYFRDVGGHQLLTHREEIEYSRAVRAGLEARKRLEAGEDSEELHQ 116 Query: 370 --AKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKF 427 +A+ A+++++ NLRLV+SIAKKY GL +DLIQEGNIGLM AV++++ GY+F Sbjct: 117 IIERAKAAREKLIRHNLRLVVSIAKKYRTSGLPLIDLIQEGNIGLMTAVERYDPELGYRF 176 Query: 428 STYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERM 487 STYAT+WIRQAI R++A+Q+RTIR+PVHM + I+K+ R Q+ Q GR T +ELA+ + Sbjct: 177 STYATFWIRQAIGRAVANQSRTIRVPVHMHDLISKVRRTEAQLEQLHGRPATDQELAQAL 236 Query: 488 LMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDV 547 + ++I + S++ PIG+D +S +GD + D + +D A T ++R Sbjct: 237 DLDVERIEQARSAIPRTSSLDKPIGEDGESTIGDLLPDPASDEVVDQAVTSAIRDQIRRS 296 Query: 548 LAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 600 L L+ RE VL +RFG+ TL E+ + + ++RER+RQIE +AL KLR+ Sbjct: 297 LESLSERERGVLTLRFGLGGQQPQTLAEIAEYYGISRERVRQIEKEALAKLRN 349 >UniRef50_A5JEM2 Chloroplast RNA-polymerase sigma factor (Fragment) n=2 Tax=stramenopiles RepID=A5JEM2_9STRA Length = 404 Score = 281 bits (718), Expect = 6e-74, Method: Composition-based stats. Identities = 110/324 (33%), Positives = 176/324 (54%), Gaps = 19/324 (5%) Query: 307 TGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQ---KLQQIEEETGLTIEQVKDIN- 362 ++T + ++ +++ ++ ++ R ++ L +E+ G + + +N Sbjct: 70 PQSDTMKEYVKDLRTVDMLTAQEEILLTRQIKRGMEIEKALVTLEKTLGRKPTEEEWVNF 129 Query: 363 ------RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV 416 + +A ++K ++ ANLRLV+S AK Y RG+ F DL+QEG GL KA Sbjct: 130 VGLKSIDDIRKNLKRASKSKSAIINANLRLVVSTAKAYQYRGVSFQDLVQEGTCGLHKAT 189 Query: 417 DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGR 476 +KF+ R+G++FSTYATWWI+Q I R++ DQ+R +R+PVH+ + + + R E R Sbjct: 190 EKFDPRKGFRFSTYATWWIKQGIMRAVTDQSRVVRLPVHVHDALFHIRRAKANFWTEHLR 249 Query: 477 EPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIG--------DDEDSHLGDFIEDTTL 528 EPT ELAE + KI + + S++ +G + + D +D+ Sbjct: 250 EPTLAELAEATGLTPQKIVFYDTVKDKVSSIDKTVGIGTKTNSMEKSQIAISDMCKDSR- 308 Query: 529 ELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIR 588 P ++A ESLR ++ L+ RE V+RMR+G+D TLEE+G F VTRER+R Sbjct: 309 NKPEETAQVESLRQDISRLINTLSPREQDVVRMRYGLDDGEIRTLEEIGSIFSVTRERVR 368 Query: 589 QIEAKALRKLRHPSRSEVLRSFLD 612 QIEA+AL KLR P R+ L+ LD Sbjct: 369 QIEARALHKLRQPYRNHRLKGQLD 392 >UniRef50_Q2JRK5 RNA polymerase sigma factor n=3 Tax=Cyanobacteria RepID=Q2JRK5_SYNJA Length = 361 Score = 280 bits (716), Expect = 1e-73, Method: Composition-based stats. Identities = 116/237 (48%), Positives = 164/237 (69%), Gaps = 2/237 (0%) Query: 370 AKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFST 429 + +A+++++ ANLRLV+S+AKKY NRG+ FLDLIQEGN+GL++A +KF RG++FST Sbjct: 119 RQGEQAQRKLINANLRLVVSVAKKYLNRGVPFLDLIQEGNMGLIRATEKFNAERGFRFST 178 Query: 430 YATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLM 489 YA WWIRQ ITR IA+QARTIR+PVHM++ + L R +R++++ GR PT ELAE + + Sbjct: 179 YAHWWIRQGITRCIANQARTIRLPVHMVDKVRLLKRTNRELMKARGRRPTEAELAEALGI 238 Query: 490 PEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLA 549 K+R + + A P+S++ P+G + +S LGD + D E P + +SLR + Sbjct: 239 KVKKLRMIQQAAALPLSLDVPVGQEGESRLGDLLPDERQEQPFEEILVQSLRQDVRSAMQ 298 Query: 550 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLR--HPSRS 604 L E +VL +R+G+D TL EVG F++TRERIRQIE ALRKLR HPSR+ Sbjct: 299 ALKPIERQVLELRYGLDGQRARTLREVGDHFNLTRERIRQIERDALRKLRLGHPSRA 355 >UniRef50_UPI00016C4C50 transcription initiation factor sigma 70 n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4C50 Length = 521 Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats. Identities = 123/313 (39%), Positives = 189/313 (60%), Gaps = 16/313 (5%) Query: 316 FNAAIAMNKPWSEKLHDVSEEVH----------------RALQKLQQIEEETGLTIEQVK 359 + + + W+++L+D+++E+ R ++L+ E +T +++ Sbjct: 205 LSPRTEILERWTDELNDLADELKHLAIAHAAAASPADRARLGRQLRDAECRACMTADELA 264 Query: 360 DINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF 419 + R + + +KE+ EANLRLV+SIAK Y NRGL F DLIQEGN GLM+AVDK+ Sbjct: 265 ALVRVLRKRRLAYQAVRKELAEANLRLVVSIAKNYRNRGLPFSDLIQEGNRGLMRAVDKY 324 Query: 420 EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPT 479 E+R +KF TYATWW+RQ ITR++ D ART+R+P H I ++++ ++ ++ GREPT Sbjct: 325 EWRLEFKFGTYATWWVRQGITRALHDNARTVRVPCHQISLLSRMEKLRGELTVATGREPT 384 Query: 480 PEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTES 539 EELAE + + ++ R + + + P+S+ +G D + L DF+ DT + P + Sbjct: 385 SEELAEALGVKPEEARSLRIVGRHPVSLNDSVGGDGERALEDFLSDTHISPPGEHVDANL 444 Query: 540 LRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLR 599 L+ +VL L RE +V+ +RFG+ T TL+EV KQ+ +TRERIRQIEA+ L KLR Sbjct: 445 LKERIGEVLKSLAPREREVIELRFGLKDGTPKTLDEVAKQYGITRERIRQIEARGLLKLR 504 Query: 600 HPSRSEVLRSFLD 612 P+RS L F D Sbjct: 505 QPTRSCRLEEFAD 517 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 72/180 (40%), Gaps = 3/180 (1%) Query: 80 AAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPE 139 ++ + D + +Y+R+MG++ LL RE E+ +AKR+E N+ + + P Sbjct: 53 GEDEGAAEDEYASGPDDALGLYLRQMGSIPLLNREKELALAKRLEHHRNRFRAAALLCPR 112 Query: 140 AITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEE 199 + E+++++ A + + I + + A + ++L + +D + Sbjct: 113 LLDRAREKFEQIAAGQTPIDPNIDAYSSADLRLTRAQIHARLATDLPTLGVLLQQDAEVF 172 Query: 200 DGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQF 259 + D + R++F L + + + + +E+ L++ K Sbjct: 173 AAGARDEYRGSRSDWQ--RDRFLRLAKCRRLVHE-LSPRTEILERWTDELNDLADELKHL 229 >UniRef50_C6X620 RNA polymerase sigma factor RpoD n=68 Tax=Bacteria RepID=C6X620_FLAB3 Length = 294 Score = 279 bits (713), Expect = 2e-73, Method: Composition-based stats. Identities = 110/270 (40%), Positives = 183/270 (67%), Gaps = 3/270 (1%) Query: 342 QKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQF 401 + LQ+I + +T ++ D+ +++ G+ A +++++ANLR V+S++K+Y N+GL Sbjct: 26 KYLQEIGKVDLITADEEVDLAQKIRAGDR---VALEKLIKANLRFVVSVSKQYQNQGLSL 82 Query: 402 LDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETIN 461 DLI EGN+GLMKA +++ RG+KF +YA WWIRQ+I +++A+Q+R +R+P++ I +IN Sbjct: 83 PDLINEGNLGLMKAAKRYDETRGFKFISYAVWWIRQSILQALAEQSRIVRLPLNKIGSIN 142 Query: 462 KLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGD 521 K+N+ + QE R P+PEELAE + M ED I++ +K + +SM+ P+ + EDS+L D Sbjct: 143 KINKAYAHLEQENERPPSPEELAEVLDMSEDDIKESMKNSGRHLSMDAPLVEGEDSNLYD 202 Query: 522 FIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFD 581 + P ESL+ L LT REA ++R+ FG++ TLEE+G+ FD Sbjct: 203 VLRSGESPSPDKELMLESLQIEIERALQTLTPREADLVRLYFGLNGKHPMTLEEIGETFD 262 Query: 582 VTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 +TRER+RQI+ KA+++L+H +RS++L+S+L Sbjct: 263 LTRERVRQIKEKAIKRLKHNTRSKILKSYL 292 Score = 43.4 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 2/63 (3%) Query: 101 YMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSD 160 Y++E+G V+L+T + E+D+A++I G + + +++ + + + L D Sbjct: 27 YLQEIGKVDLITADEEVDLAQKIRAGDRVALEKLI--KANLRFVVSVSKQYQNQGLSLPD 84 Query: 161 LIT 163 LI Sbjct: 85 LIN 87 >UniRef50_B3DXQ3 RNA polymerase sigma factor n=5 Tax=Chlamydiae/Verrucomicrobia group RepID=B3DXQ3_METI4 Length = 287 Score = 279 bits (713), Expect = 3e-73, Method: Composition-based stats. Identities = 114/259 (44%), Positives = 178/259 (68%), Gaps = 4/259 (1%) Query: 343 KLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL 402 L++I + LT E+ ++ +R+ G+ + A+++M++ANLRLV+ IA Y N GL Sbjct: 11 YLREISQIPLLTKEKEVELAKRIQQGDQE---ARRQMIQANLRLVVKIAHDYANSGLPLP 67 Query: 403 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 462 DLI EGNIGLMKAVD+F+ +G K STYA WWI+Q+I R++A+Q++TIR+PVH+++ I K Sbjct: 68 DLISEGNIGLMKAVDRFDPSKGGKLSTYAAWWIKQSIKRALANQSKTIRLPVHLVDKIAK 127 Query: 463 LNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSH-LGD 521 + R++ Q+ + +GR+PT EELAE + M K+ ++ IA P S++ +G++ED LG+ Sbjct: 128 MRRVAMQLSEILGRDPTDEELAEELGMSTTKVAELRTIAIRPASLDATVGEEEDGTALGE 187 Query: 522 FIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFD 581 ++D + P S ++L+ ++L L RE K+L +RFG++ N TLEE+GK+F Sbjct: 188 LVKDESAASPDQSVLDQNLKNTIMELLPKLDERERKILSLRFGLEGNEQMTLEEIGKEFH 247 Query: 582 VTRERIRQIEAKALRKLRH 600 VTRERIRQ++ ALRK+R Sbjct: 248 VTRERIRQLQNIALRKIRK 266 Score = 49.6 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 2/72 (2%) Query: 92 GRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRV 151 +++Y+RE+ + LLT+E E+++AKRI+ G + + + + + +++ Sbjct: 2 DNNDSALKLYLREISQIPLLTKEKEVELAKRIQQGDQEARRQMIQA--NLRLVVKIAHDY 59 Query: 152 EAEEARLSDLIT 163 L DLI+ Sbjct: 60 ANSGLPLPDLIS 71 >UniRef50_B7GEJ9 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7GEJ9_PHATR Length = 329 Score = 278 bits (711), Expect = 5e-73, Method: Composition-based stats. Identities = 114/296 (38%), Positives = 180/296 (60%), Gaps = 16/296 (5%) Query: 331 HDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISI 390 E++ L + +E T Q + + ++ RAK + E+N+RLV+SI Sbjct: 35 EATREQLEAELLRPPTYQE--WATKIQPDMMVPDLKKQIRRSLRAKAALTESNIRLVVSI 92 Query: 391 AKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTI 450 AK+Y +RGL F DL QEG +GL +A +KF+ RG++FSTYA+WWI+Q+I R+IADQ RTI Sbjct: 93 AKRYQHRGLSFQDLAQEGILGLTRACEKFDPERGFRFSTYASWWIKQSIMRAIADQGRTI 152 Query: 451 RIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETP 510 R+PVH+ + IN L ++ R++ E+GR+ EE+ E+ + +KI + +++++ +SME Sbjct: 153 RLPVHIHDQINALRKVERELKAELGRDARLEEITEKSTLTAEKIEFLNRVSQQDVSMEQE 212 Query: 511 I-------------GDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAK 557 + G D LGD + D + P + A+ + L+ ++ L +RE Sbjct: 213 LRTSKSKGSSAGLGGPDGGLTLGDVMGDPEAQ-PAEEASYQMLKDDISRLICTLNSREQA 271 Query: 558 VLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 V+RMRFG+D TLEE+G++F VTRERIRQIE++AL KLR P R+ ++ ++ D Sbjct: 272 VIRMRFGLDDGKAKTLEEIGRRFSVTRERIRQIESRALHKLRQPYRNHAVKCYVKD 327 >UniRef50_Q116K5 RNA polymerase sigma factor n=1 Tax=Trichodesmium erythraeum IMS101 RepID=Q116K5_TRIEI Length = 496 Score = 277 bits (709), Expect = 7e-73, Method: Composition-based stats. Identities = 125/313 (39%), Positives = 188/313 (60%), Gaps = 15/313 (4%) Query: 300 KNFITLFTGNETSDTW-FNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQV 358 +F L E + +A+ K + + E+++R+ +++ + Sbjct: 197 NSFARLHPEEEIHLAHQIDGLLALEKIY----EKLEEKLNRSPNEIE--------WATEA 244 Query: 359 KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK 418 K + + RRAK +MV ANLRLV S+AK+Y NRGL F DLIQEG IGL++A +K Sbjct: 245 KMSKWELCDRLEQGRRAKNQMVTANLRLVTSVAKRYQNRGLDFQDLIQEGVIGLLRATEK 304 Query: 419 FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP 478 F++ +GYKFSTY WWIRQAITR+I D +R +R+PV++ ETI+++ +I +Q+ E Sbjct: 305 FDHTKGYKFSTYGIWWIRQAITRAICDYSRIVRLPVYLYETISQIKKIVKQISIECS-PL 363 Query: 479 TPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTE 538 T EE+A RM M +K++ +++ A+E +S++ PI E+ + I+ E P Sbjct: 364 TAEEVATRMEMTTEKLQFIIECAQETLSLDYPINKGENIIYKEMIK-FNGETPTKYVFEN 422 Query: 539 SLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKL 598 L+ VL LT RE VL+MRFG+D + TL+E+G F++TRERIRQIEAKALRKL Sbjct: 423 CLQEDVESVLKTLTERERNVLQMRFGLDDGQEKTLKEIGDTFNLTRERIRQIEAKALRKL 482 Query: 599 RHPSRSEVLRSFL 611 P R+ +LR ++ Sbjct: 483 EDPKRNHILREYI 495 >UniRef50_A9ESS1 RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9ESS1_SORC5 Length = 715 Score = 277 bits (708), Expect = 9e-73, Method: Composition-based stats. Identities = 137/503 (27%), Positives = 227/503 (45%), Gaps = 44/503 (8%) Query: 119 IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTA 178 +A+ + E + ++ +E R +D I + P A Sbjct: 237 LAQGGTATPEIAALGLLEDDQTEETVVRPRPAEILDEERTADFIDLDLGPLDRLPQPERA 296 Query: 179 THVGSELSQEDLDDDEDE----DEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDT 234 + EL + + + D +D A E+ +V Sbjct: 297 RNQDRELKDVEDGGGDSMLARYFRDMALHPVMGPDEELDTARAVERTEV--EHWVALLSY 354 Query: 235 IKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQ 294 + A +E++ K E D V+ + M+ V Sbjct: 355 LPAAEYILTALEEDVAKAGE-----------------------DEVKAPQIAEMQKLVRL 391 Query: 295 CKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKL-HDVSEEVHRALQKLQQIEEETGL 353 K K + T + A A+ P S++L + + R L + E++ Sbjct: 392 AKKQKGKLLAEQEKPWTQLSE-ELAAAVRLPDSDRLWMARAFGIARDLVREPDFEDDVSD 450 Query: 354 TIEQ------------VKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQF 401 E + R+ AK V+ANLRLV+SIA++Y L Sbjct: 451 PEETRPTRPRLPMSGSYRRYLDRVERSFQAQHDAKNRFVKANLRLVVSIARRYNRGRLPL 510 Query: 402 LDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETIN 461 +DLIQEGNIGLMKAV++F++ RGY+FSTYA+WWIR AI+R++AD+ R +RIPVHM++T N Sbjct: 511 IDLIQEGNIGLMKAVERFDHSRGYRFSTYASWWIRHAISRALADKGRAVRIPVHMLDTYN 570 Query: 462 KLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLK-IAKEPISMETPIGDDEDSHLG 520 ++ R ++ ++ G EPT EEL + +P +K+ KV A+ P S++ P+GD++ Sbjct: 571 RVARATQAIIARTGHEPTIEELEKETGVPREKLDKVKDFYAETPFSLDRPVGDEDGRKFI 630 Query: 521 DFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQF 580 DF+++ P D +L LT E++++R RFG+D + TL+E+G ++ Sbjct: 631 DFLQEENALSPFDHLANRKWSDEVRRLLTTLTPIESRIIRWRFGLDDEDELTLKEIGDKY 690 Query: 581 DVTRERIRQIEAKALRKLRHPSR 603 +++RERIRQ++ +AL K+R R Sbjct: 691 NLSRERIRQLQEQALGKIRKQMR 713 >UniRef50_A9BJC9 RNA polymerase sigma factor n=3 Tax=Thermotogaceae RepID=A9BJC9_PETMO Length = 424 Score = 277 bits (708), Expect = 1e-72, Method: Composition-based stats. Identities = 131/275 (47%), Positives = 191/275 (69%), Gaps = 8/275 (2%) Query: 343 KLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL 402 L++I + LT + + + RR +G+ + A++E+++ANLRLVISIAK+Y GL FL Sbjct: 153 YLKEISKSKLLTPSRERKLARRAQMGDKR---AREELIKANLRLVISIAKRYVGHGLGFL 209 Query: 403 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 462 DLIQEGNIGLMKAV KF++++GYKFSTY+ WWIRQAITR+IADQ RT+RIPVH++ETIN+ Sbjct: 210 DLIQEGNIGLMKAVAKFDWKKGYKFSTYSYWWIRQAITRAIADQGRTVRIPVHLVETINR 269 Query: 463 LNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDD----EDSH 518 +NR+ + +QE G P EEL+ M P DK+++VL AK S+ PI +D +S Sbjct: 270 MNRVVNKYIQENGEVPDLEELSVLMDKPVDKMKEVLISAKNIFSLNAPISNDVDAEGESE 329 Query: 519 LGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGK 578 + DFI D+ P + +R ++ L+ +EA +L+MR+G TLEEVG+ Sbjct: 330 VLDFI-DSDSPTPDEEGRKMIIRQKMEMIIDTLSPKEAMILKMRYGFVDGKQKTLEEVGE 388 Query: 579 QFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 F+VTRERIRQIE+K++RKL+HP+R +++ + + + Sbjct: 389 FFNVTRERIRQIESKSIRKLKHPARKKMIENIIQE 423 Score = 58.1 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 63/154 (40%), Gaps = 15/154 (9%) Query: 22 LTYAEVNDHLPE---DIVDSDQIEDIIQMINDMGIQVMEEA-------PDADDLMLAENT 71 +T+ E+++ +P + + + + I V++ + + +L + E Sbjct: 61 VTFEEIDESIPSQMREDFTLEFLITFYNELKKSNISVVDGSSGNFCEEDEEKELEVNEEF 120 Query: 72 ADEDAAEAAAQVLSSVESEI---GRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGIN 128 D + E + S VE E+ DP+++Y++E+ +LLT E +A+R + G Sbjct: 121 KDSEEYEEIFEDFSDVEVEMCDNISLQDPIKIYLKEISKSKLLTPSRERKLARRAQMGDK 180 Query: 129 QVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLI 162 + + + + ++ R DLI Sbjct: 181 RAREELI--KANLRLVISIAKRYVGHGLGFLDLI 212 >UniRef50_B5JCN6 RNA polymerase sigma factor n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JCN6_9BACT Length = 377 Score = 276 bits (707), Expect = 1e-72, Method: Composition-based stats. Identities = 111/272 (40%), Positives = 182/272 (66%), Gaps = 4/272 (1%) Query: 335 EEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKY 394 + + LQ+I LT Q + RR+ GE + A+ M+++NLRLV+ IA Y Sbjct: 76 PDRNSIRTYLQEIGRIDLLTPAQEVTLARRIQAGEKE---ARDLMIKSNLRLVVKIAHDY 132 Query: 395 TNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPV 454 + GL LDLI EGNIGL+KAV++F+ +G K STYA WWI+Q+I R++A+Q++TIR+PV Sbjct: 133 KDFGLPVLDLISEGNIGLVKAVERFDPDKGGKLSTYAAWWIKQSIKRALANQSKTIRLPV 192 Query: 455 HMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDD 514 H+++ I+++ +++ + +E+GREPT +ELAE + MP +K+ + ++ P S+ P+G+D Sbjct: 193 HLVDKISRMRKMALMLTEELGREPTDQELAEMLEMPVNKVSHLKSVSVRPTSLNAPVGED 252 Query: 515 EDSH-LGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTL 573 +S G+ + D P ++ +SLR H+++ GL REA+++R+RFG++ ++ TL Sbjct: 253 GNSTEFGEIVGDDNAPTPYENLHEKSLRGDLHEMIDGLEDREAEIIRLRFGLNGDSPLTL 312 Query: 574 EEVGKQFDVTRERIRQIEAKALRKLRHPSRSE 605 EEVG+ FD+TRER+RQ++ AL K+R S+ Sbjct: 313 EEVGQVFDITRERVRQLQNIALSKMRKIMASK 344 Score = 44.6 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 36/68 (52%), Gaps = 2/68 (2%) Query: 96 DPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEE 155 + +R Y++E+G ++LLT E+ +A+RI+ G + + + + +++ + Sbjct: 79 NSIRTYLQEIGRIDLLTPAQEVTLARRIQAGEKEARDLMI--KSNLRLVVKIAHDYKDFG 136 Query: 156 ARLSDLIT 163 + DLI+ Sbjct: 137 LPVLDLIS 144 >UniRef50_B0RI86 RNA polymerase sigma factor n=2 Tax=Clavibacter michiganensis RepID=B0RI86_CLAMS Length = 347 Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats. Identities = 123/281 (43%), Positives = 178/281 (63%), Gaps = 3/281 (1%) Query: 332 DVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIA 391 ++ V R ++ +E + R RAK+ +V ANLRLV+SIA Sbjct: 67 ELEVSVARRIEVGVLSQEVLDTRTDLTPAERREYQTLAQDGMRAKQHLVNANLRLVVSIA 126 Query: 392 KKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIR 451 K+YT RGL FLDLIQEGN+GL++AV+KF+Y+ G+KFSTYA+WWI+Q+ITR +AD +RTIR Sbjct: 127 KRYTGRGLPFLDLIQEGNMGLVRAVEKFDYQAGFKFSTYASWWIKQSITRGMADTSRTIR 186 Query: 452 IPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPI 511 IPVH +E IN++N + R++ E+GR+P+ EE+A P K+R +L A+EP+S++ + Sbjct: 187 IPVHTVEHINRINAVQRELGDELGRDPSMEEIARESDTPVTKVRYLLDRAQEPMSLQVLV 246 Query: 512 ---GDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMN 568 G D D+ + D IED + P+D T + + A ++ GL R+A+V+RMRFG+ Sbjct: 247 GGSGGDGDTEMADLIEDADVTQPIDVVTQQLMAAHVTRLIDGLAERDAEVVRMRFGLAGL 306 Query: 569 TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRS 609 +L V +Q VTRER+RQIE K L KLR P +R Sbjct: 307 EPRSLAFVSQQLGVTRERVRQIEKKVLAKLRIPELEMYIRG 347 Score = 49.2 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 1/99 (1%) Query: 59 APDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID 118 +D + +A A + + G +TD V+ Y+R++G V LLT E E+ Sbjct: 12 ETASDTELDHIESARPVDPYADSDLPEPSLVTPGASTDAVKDYLRQIGRVPLLTAELEVS 71 Query: 119 IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEAR 157 +A+RIE G+ Q + + +Y + + R Sbjct: 72 VARRIEVGVL-SQEVLDTRTDLTPAERREYQTLAQDGMR 109 >UniRef50_D1CD77 RNA polymerase sigma factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CD77_THET1 Length = 596 Score = 275 bits (704), Expect = 3e-72, Method: Composition-based stats. Identities = 128/240 (53%), Positives = 172/240 (71%), Gaps = 1/240 (0%) Query: 356 EQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKA 415 DI +++ A+ A+K ++EANLRLV+SIAKKYT RG+ LDLIQEGNIGL+KA Sbjct: 236 ANQADIQDKITKWIAEGDIARKRLIEANLRLVVSIAKKYTGRGITLLDLIQEGNIGLIKA 295 Query: 416 VDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMG 475 V+KF +++GYKFSTYATWWIRQAITR+IADQARTIRIPVHM E INK+ + R++ QE+G Sbjct: 296 VEKFRHQKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMGEAINKIAQARRRLTQELG 355 Query: 476 REPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSA 535 REPT +E+A + +P +KIR+V KI++EPIS+E P+G++ED+ LGDFI+D P+D+A Sbjct: 356 REPTEQEIANYLGIPVEKIREVQKISQEPISLENPVGEEEDTSLGDFIQDHKAPAPMDAA 415 Query: 536 TTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKAL 595 + LR VL L+ RE VL MRFG+D EV V+ ++ Q E++ L Sbjct: 416 SQSLLRDQIDQVLKHLSERERGVLLMRFGLDC-EPRPYREVAHILAVSPNQVMQAESRVL 474 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 46/154 (29%), Positives = 71/154 (46%), Gaps = 17/154 (11%) Query: 474 MGREPTP-EELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGD-FIEDTTLELP 531 + EP P E+A + + +++ + + ++ + ++ L D F + Sbjct: 445 LDCEPRPYREVAHILAVSPNQVMQAESRVLDMVA--ARLSPEDYQMLLDRFGHLDRSPMS 502 Query: 532 LDSA-------------TTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGK 578 +S + LR A V+ + A E ++R RFG+D+ TLEEVG+ Sbjct: 503 EESFRLKYKLTQTQLREIDQKLREALASVMLHVPAPERDMMRFRFGLDIGQPRTLEEVGR 562 Query: 579 QFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 F VTRERIRQIE+KALRKLR L L Sbjct: 563 AFGVTRERIRQIESKALRKLRRDVFRRQLEDLLS 596 Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 42/244 (17%), Positives = 88/244 (36%), Gaps = 19/244 (7%) Query: 27 VNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSS 86 ++ + SDQ +I + +++ + + D + E+ Sbjct: 4 ISGSINSKPTPSDQEGEIYKYVSNRRDTSYRAGMRMKNQENDADYVDLEIEESLQDPEDL 63 Query: 87 VESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGI-----NQVQCSVAEYPEAI 141 + E DP+R+Y+RE+G LL++E EI++A++ E G + Sbjct: 64 EDLEGTNLDDPIRLYLREIGKENLLSQEQEIELARKNERGNYLSNIRSSLQGLDPSQFTE 123 Query: 142 TYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDG 201 + +E+ +L T ++ D + + ++ ++ D Sbjct: 124 QLAVTLITDLESSLQAAKELYTHIFPADSIPDYWVELIERVVQHLGLESRVEQTTEQSDE 183 Query: 202 DDDSADDDNSIDPELAREKF------AELRAQ--------YVVTRDTIKAKGRSHATAQE 247 D +S + ID + R A++ + + T D IK G + A Q+ Sbjct: 184 DSESKGIYSEIDWAIVRLHILQELAPADISEKIVRTSYRPFDFTSDLIKHFGANQADIQD 243 Query: 248 EILK 251 +I K Sbjct: 244 KITK 247 >UniRef50_Q9LD95 Sigma factor-like protein n=3 Tax=Eukaryota RepID=Q9LD95_ARATH Length = 547 Score = 275 bits (704), Expect = 3e-72, Method: Composition-based stats. Identities = 97/278 (34%), Positives = 171/278 (61%) Query: 335 EEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKY 394 E+V L+ E G E + + + + R ++++++ ANLRLV+ IAK+Y Sbjct: 267 EKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANLRLVVHIAKQY 326 Query: 395 TNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPV 454 NRGL F DL+QEG++GLMK+V+KF+ + G +F+TYA WWIRQ+I +SI +RTIR+P Sbjct: 327 QNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPE 386 Query: 455 HMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDD 514 ++ + K++ + +QE P+ EELA + + +K+ K+L + P+SM+ PI D Sbjct: 387 NVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSD 446 Query: 515 EDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLE 574 +D+ + D+ +E P S + +R ++L L+ +E +++++RFGID +L Sbjct: 447 QDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLS 506 Query: 575 EVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 E+G+ + +++ER+RQ+E++AL +L+ S L ++ D Sbjct: 507 EIGEIYGLSKERVRQLESRALYRLKQNMNSHGLHAYAD 544 >UniRef50_Q601Y8 RNA polymerase sigma factor n=8 Tax=Bacteria RepID=Q601Y8_MYCH2 Length = 676 Score = 274 bits (702), Expect = 5e-72, Method: Composition-based stats. Identities = 129/294 (43%), Positives = 192/294 (65%), Gaps = 11/294 (3%) Query: 326 WSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLR 385 + KL D S+ + ++ + + + LT E+ +++ ++M I ++A+ +++ NLR Sbjct: 384 YLNKLTDTSDMIKWYMRWIGKYGK--LLTAEEERELAKKMKIKGRIGKKARDTLIKRNLR 441 Query: 386 LVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIAD 445 LV++ AK+Y NRGL F+DLI EGN+G++KAV K++Y RG+KFSTYATWWIRQAITR++AD Sbjct: 442 LVVNSAKRYKNRGLGFIDLISEGNLGIIKAVAKYDYTRGFKFSTYATWWIRQAITRAVAD 501 Query: 446 QARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERML--MPEDKIRKVLKIAKE 503 QAR IRIPVHM+ETINK+N++ R++ QE G PT EE++ER+ DKIR + KI + Sbjct: 502 QARLIRIPVHMVETINKINKVERELQQEKGLNPTAEEISERLGGEFSPDKIRYIKKINID 561 Query: 504 PISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLA-GLTAREAKVLRMR 562 PIS++ IG +EDS DFI+D + P+D A E +++ L E ++ R Sbjct: 562 PISLDKAIGKEEDSSFSDFIKDENMISPVDYAIREEKAKVLLEMIDSTLDYDERDFIKRR 621 Query: 563 FGIDMNTD------YTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSF 610 +G+ N + ++ EE+ VT+ER+RQIEAK L+KLR P R LR F Sbjct: 622 YGVGTNDEGIPYQAHSFEELAAMRRVTKERVRQIEAKILKKLRTPHRRLSLRDF 675 >UniRef50_B7K407 RNA polymerase sigma factor n=27 Tax=Cyanobacteria RepID=B7K407_CYAP8 Length = 328 Score = 274 bits (702), Expect = 5e-72, Method: Composition-based stats. Identities = 108/242 (44%), Positives = 172/242 (71%), Gaps = 3/242 (1%) Query: 370 AKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFST 429 + RAK++M+EANLRLV++IAKKY R ++FLDLIQEG++GL + V+KF+ +GYKFST Sbjct: 87 EQGNRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFST 146 Query: 430 YATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLM 489 YA WWIRQAITR+IA QARTIR+P+H+ E +NK+ + R++ Q++GR TP E+A + + Sbjct: 147 YAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQKLGRSATPAEIAAVLEI 206 Query: 490 PEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLA 549 +IR+ L +A++PIS++ +GD++D+ L + +ED P T E LR +++ Sbjct: 207 EPSQIRECLSMARQPISLDVRVGDNQDTELSELLEDHEA-SPDQYITQELLRQDLKNLME 265 Query: 550 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRS 609 LT ++ VL +RFG++ + +L ++GK+ +++RER+RQ+E +AL +LR R ++ Sbjct: 266 ELTPQQRSVLILRFGLEDGKELSLAKIGKKLNISRERVRQLEHQALAQLRR--RRANVKE 323 Query: 610 FL 611 +L Sbjct: 324 YL 325 Score = 46.5 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 40/282 (14%), Positives = 89/282 (31%), Gaps = 18/282 (6%) Query: 94 TTDPVRMYMREMGTVELLTREGEIDIAKRIE--DGINQVQCSVAEYPEAITYLLEQYDRV 151 + D VR Y+ E+G V LLT E EI K+++ + +++ + + E V Sbjct: 16 SADMVRTYLHEIGRVPLLTHEQEIVYGKQVQRMMSLFEMKDQLTQAQGTEPSDKEWAKAV 75 Query: 152 EAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNS 211 +E L I + A V + + + + ++G Sbjct: 76 NLKEPELKKTIEQGNRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEK 135 Query: 212 IDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFR----------- 260 DP KF+ ++ R I A + ++E + + Sbjct: 136 FDPTKGY-KFSTYAYWWI--RQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQKLG 192 Query: 261 --LVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNA 318 P + ++ + + R + L V L +E S + Sbjct: 193 RSATPAEIAAVLEIEPSQIRECLSMARQPISLDVRVGDNQDTELSELLEDHEASPDQYIT 252 Query: 319 AIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKD 360 + + + +++ + L +E+ L++ ++ Sbjct: 253 QELLRQDLKNLMEELTPQQRSVLILRFGLEDGKELSLAKIGK 294 >UniRef50_B9S0J0 RNA polymerase sigma factor rpoD, putative n=1 Tax=Ricinus communis RepID=B9S0J0_RICCO Length = 548 Score = 274 bits (701), Expect = 7e-72, Method: Composition-based stats. Identities = 92/286 (32%), Positives = 168/286 (58%), Gaps = 10/286 (3%) Query: 330 LHDVSEEVHRALQK---LQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRL 386 L +V E+ + L + + GL+ ++ R++++++ ANLR+ Sbjct: 267 LENVKEKFKLQFGRDPTLVEWADAVGLSYSVMQSQLH-------SGNRSREKLINANLRM 319 Query: 387 VISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQ 446 V+ IAK+Y RGL DL+QEG++GLMK+++KF+ + G +F+TYA WWIRQ + ++I Sbjct: 320 VVHIAKQYQGRGLSLQDLLQEGSMGLMKSIEKFKPQVGCRFATYAYWWIRQTVRKAIFQH 379 Query: 447 ARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPIS 506 +RTIR+P ++ T+ K++ R + E PT EELA+R+ + ++ ++L +A+ P+S Sbjct: 380 SRTIRLPENVYHTLGKVSEAKRSYIMEGNHNPTKEELAKRIGITTVRLERLLYMARMPLS 439 Query: 507 METPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGID 566 M+ + D+++ + D +E+P + +R +L L RE K++R+R+GI+ Sbjct: 440 MQQTVWADQETTFQEITADIEVEIPELCVAKQLMRKHVLSLLNILNPRERKIIRLRYGIE 499 Query: 567 MNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 +L E+G F +++ER+RQ+E++AL KL+ S L ++ D Sbjct: 500 DGKKKSLSEIGSVFGLSKERVRQLESRALYKLKQCLASHGLEAYAD 545 >UniRef50_B1ZU80 RNA polymerase sigma factor n=6 Tax=Verrucomicrobia RepID=B1ZU80_OPITP Length = 353 Score = 274 bits (700), Expect = 8e-72, Method: Composition-based stats. Identities = 112/271 (41%), Positives = 178/271 (65%), Gaps = 4/271 (1%) Query: 336 EVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYT 395 + LQ+I + LTI++ + +R+ G+ + A+ M++ANLRLV+ IA Y Sbjct: 47 DRSNLQLYLQEIGKTALLTIDEEISLAKRIRKGD---KAARDHMIKANLRLVVKIAMDYK 103 Query: 396 NRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVH 455 + GL LDLI EGNIGL+KAV++F+ R+G K STYA WWI+Q+I R++A+Q++TIR+PVH Sbjct: 104 DFGLPLLDLISEGNIGLIKAVERFDPRKGGKLSTYAAWWIKQSIKRALANQSKTIRLPVH 163 Query: 456 MIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDE 515 +++ I+K+ R + + +E+GREPT EELA + +P K+ + ++ P S++ P+G++ Sbjct: 164 LVDKISKMRRTAMALTEELGREPTDEELAIELQIPTSKVAHLKSVSVRPASLDAPVGEEG 223 Query: 516 DS-HLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLE 574 DS G+ + D P + ++L + H ++A L REA+++R+RFG+D + TLE Sbjct: 224 DSATFGEIVGDDNAVSPFEGLREKNLNSDLHAMVASLDEREAEIIRLRFGLDGKDELTLE 283 Query: 575 EVGKQFDVTRERIRQIEAKALRKLRHPSRSE 605 EVG++F VTRERIRQ+E AL K+R Sbjct: 284 EVGRRFHVTRERIRQLEYLALSKMRKAMAKH 314 Score = 41.9 bits (97), Expect = 0.078, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 4/107 (3%) Query: 57 EEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGE 116 +E + A E +V + R+ +++Y++E+G LLT + E Sbjct: 12 DETETYTAPTVELPDAPPSFLEKPDRVADVPVAHGDRSN--LQLYLQEIGKTALLTIDEE 69 Query: 117 IDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLIT 163 I +AKRI G + + + +++ + L DLI+ Sbjct: 70 ISLAKRIRKGDKAARDHMI--KANLRLVVKIAMDYKDFGLPLLDLIS 114 >UniRef50_Q9ZTL1 RNA polymerase sigma factor n=1 Tax=Cyanidium caldarium RepID=Q9ZTL1_CYACA Length = 589 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 118/287 (41%), Positives = 179/287 (62%), Gaps = 8/287 (2%) Query: 330 LHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVIS 389 L V E++ R + +L + E T V ++ ++ G AK MV ANLRLVI Sbjct: 290 LEAVREDLRRRIGRLPREHEWAMETNMSVSELRGKLIKGRR----AKNRMVAANLRLVIC 345 Query: 390 IAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQART 449 AK++ NRG+ F DL+QEG+IGL++ V+K++ RG++FSTYA+WWIRQ I +++ + ++ Sbjct: 346 FAKRFRNRGVAFQDLVQEGSIGLIRGVEKYDANRGFRFSTYASWWIRQGIHKALLECSKM 405 Query: 450 IRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMET 509 R+PVH+ E I ++ R S +++ +GREPT E+A ++ MPE+K+ +L+ A+ +S+E Sbjct: 406 FRLPVHVNEMIKEIRRCSYELMNILGREPTKLEIAMKVGMPEEKVIFLLQRAQTALSLEM 465 Query: 510 PIGDDEDS----HLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGI 565 P+ + S LGD + T P DSA SLR L+ L RE +V+RMRFG+ Sbjct: 466 PLRGSDSSLESRTLGDVVSSTASPSPEDSAFGTSLRYDLERALSQLDFREREVIRMRFGL 525 Query: 566 DMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 D +L EVG F VTRER+RQIE +ALRKLR P + L+ +++ Sbjct: 526 DDGRTKSLGEVGSLFCVTRERVRQIETRALRKLRDPRCNIFLKEYME 572 >UniRef50_B8HIZ1 RNA polymerase sigma factor n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HIZ1_ARTCA Length = 951 Score = 273 bits (698), Expect = 1e-71, Method: Composition-based stats. Identities = 122/284 (42%), Positives = 164/284 (57%), Gaps = 2/284 (0%) Query: 331 HDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISI 390 H+ ++ A++ E G + + + + R A ++V NLRLV+SI Sbjct: 484 HEEVTDLGMAIEAGLYAEHLLGTARPEGRRAILELESVASAGRDAVLKLVSCNLRLVVSI 543 Query: 391 AKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTI 450 AK++T RG+ FLDLIQEGN GL +AV KF+Y +G+KFSTYATWWIRQAITR IADQ+RTI Sbjct: 544 AKRHTGRGMDFLDLIQEGNAGLYRAVQKFDYTKGFKFSTYATWWIRQAITRGIADQSRTI 603 Query: 451 RIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISME-- 508 R+PVH E + + R LQ GR+ T EE+AE D+I V + P S++ Sbjct: 604 RLPVHFHEQVVSVFIAERNFLQSEGRDGTAEEIAEACGKTVDEINAVRRHRTPPASLDWE 663 Query: 509 TPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMN 568 P G LG+ + D D+A L++A H L L+ REA VL RFG+ Sbjct: 664 VPNGKGGVELLGETLYDPDEPTAYDAAVLAQLQSAVHGALDRLSEREAGVLAYRFGLATG 723 Query: 569 TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 TL+++G + VTRERIRQIEAKA LR P+ + LR F D Sbjct: 724 EQLTLDQIGTIYGVTRERIRQIEAKAFAALREPAAAAQLRDFFD 767 >UniRef50_C1SHQ6 RNA polymerase sigma factor n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SHQ6_9BACT Length = 322 Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats. Identities = 115/313 (36%), Positives = 180/313 (57%), Gaps = 5/313 (1%) Query: 297 MPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVS-EEVHRALQKLQQIEEETGLTI 355 + K+ + + + + + E ++ S E++ L +I + LT Sbjct: 7 VDKEELLEEEPTDLSEVEEIETKLDTCETEPEPKYEYSSEDLEVFKIYLNEISKYPVLTR 66 Query: 356 EQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKA 415 EQ ++++ + G +K+ M++ NLRLV+SIAKKY NRG+ +DL++EGNIGL+KA Sbjct: 67 EQEGELSQGIEKG---CNDSKETMIKCNLRLVVSIAKKYINRGMNLVDLVEEGNIGLLKA 123 Query: 416 VDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMG 475 V+KF+Y +G+KFSTYATWWIRQAI R+I +Q R +RIPVHM E I+K+ + ++ Q++G Sbjct: 124 VEKFDYTKGFKFSTYATWWIRQAIERAIINQCRMVRIPVHMSENISKVMKTQNELQQKLG 183 Query: 476 REPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT-LELPLDS 534 REPT EL+ MP ++KV K+ S++ P+G DE S L +FI D P Sbjct: 184 REPTIHELSTACKMPLSTLKKVFDAIKQDTSLDMPVGGDESSTLHEFIADDEKYLDPYLK 243 Query: 535 ATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKA 594 S + L L+ E ++ R+G+ N TLE +G +TRER+RQIE + Sbjct: 244 IENTSKKEIIFKWLTFLSDNEKTIIIRRYGLTGNDPETLESIGNDLGITRERVRQIEKRV 303 Query: 595 LRKLRHPSRSEVL 607 L K+R+ ++ + Sbjct: 304 LSKMRNLLATKKI 316 Score = 47.7 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 16/111 (14%), Positives = 45/111 (40%), Gaps = 4/111 (3%) Query: 54 QVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDP--VRMYMREMGTVELL 111 +++++ ++ + +E + + D ++Y+ E+ +L Sbjct: 5 EIVDKEELLEEEPTDLSEVEEIETKLDTCETEPEPKYEYSSEDLEVFKIYLNEISKYPVL 64 Query: 112 TREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLI 162 TRE E ++++ IE G N + ++ + + ++ + L DL+ Sbjct: 65 TREQEGELSQGIEKGCNDSKETMIKC--NLRLVVSIAKKYINRGMNLVDLV 113 >UniRef50_Q31QR8 RNA polymerase sigma factor rpoD4 n=59 Tax=Cyanobacteria RepID=RPOD4_SYNE7 Length = 311 Score = 272 bits (695), Expect = 3e-71, Method: Composition-based stats. Identities = 110/271 (40%), Positives = 169/271 (62%), Gaps = 5/271 (1%) Query: 330 LHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVIS 389 L EEV + + + E + + G+ AK +M++ANLRLV+S Sbjct: 33 LLTAEEEVELSRKVQLMMALLENPDAESNSENQAVLQAGQR----AKTKMLKANLRLVVS 88 Query: 390 IAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQART 449 +AKKY N+GL+ LDLIQEG++GL +AV+KF+ GYKFSTYA WWIRQ++TR+I + ART Sbjct: 89 VAKKYQNQGLELLDLIQEGSLGLERAVEKFDPALGYKFSTYAYWWIRQSMTRAIDNHART 148 Query: 450 IRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMET 509 IR+P+H+ E I+++ +++R++ ++ R P+ E+AE + +P + +L + S++ Sbjct: 149 IRLPIHVSEKISRIKKMTRELTHQLKRLPSRAEIAEALKLPLQDVEMLLSQSTPCTSLDA 208 Query: 510 PI-GDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMN 568 GDD S LGD I D P+D+ LA LT RE +VL++RFG+ Sbjct: 209 QARGDDGRSFLGDLIPDPKSLEPMDAMDRHIQHEQISTWLAHLTEREQQVLQLRFGLHDG 268 Query: 569 TDYTLEEVGKQFDVTRERIRQIEAKALRKLR 599 +TL E+G++ +V+RERIRQ+EA+AL+KLR Sbjct: 269 EQHTLAEIGRRLNVSRERIRQVEARALQKLR 299 >UniRef50_Q9KHE4 RNA polymerase sigma factor n=14 Tax=Cyanobacteria RepID=Q9KHE4_ANASP Length = 390 Score = 272 bits (695), Expect = 3e-71, Method: Composition-based stats. Identities = 116/296 (39%), Positives = 187/296 (63%), Gaps = 5/296 (1%) Query: 317 NAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAK 376 +A + E++ D+ ++ + + + G K + R+ G R AK Sbjct: 98 EVELARRVRFLEEVRDLQADLQLQIGQHPTKAQVAGQLEITEKQLENRLYQG----RVAK 153 Query: 377 KEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIR 436 ++M+ +NLRLV+SIAK+Y NRG+ FLDLIQEG +GL +A +KF+ +GYKFSTYA WWIR Sbjct: 154 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIR 213 Query: 437 QAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRK 496 QAITR+IA+ ARTIR+P+H++E +NKL + R++ Q+ R P+ E+AE + + ++R+ Sbjct: 214 QAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKFSRNPSEAEMAEALEISVPQLRQ 273 Query: 497 VLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVL-AGLTARE 555 + ++ ++ +S+ +G +ED+ L D +ED P +R +VL LT RE Sbjct: 274 LQQLRRQALSLNHRVGKEEDTELMDLLEDEDNLSPEAKMNENMMRQEIWEVLGDVLTPRE 333 Query: 556 AKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 V+ +R+G+ + TLEEVG F+++RER+RQI++KA+RKLR P ++ L+ +L Sbjct: 334 KDVISLRYGLTTSEPCTLEEVGNMFNLSRERVRQIQSKAMRKLRRPHIAKRLKGWL 389 Score = 43.8 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 13/86 (15%), Positives = 34/86 (39%), Gaps = 1/86 (1%) Query: 39 DQIEDIIQMINDMGIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPV 98 + IE +++ + + +E + + + ++E + D V Sbjct: 22 EIIESVVEH-EEHSLDTLELIIEEEPPITENLDSEERDSGDEMAAARPSGYNKTEHDDAV 80 Query: 99 RMYMREMGTVELLTREGEIDIAKRIE 124 + +EM LL + E+++A+R+ Sbjct: 81 GAFFKEMARYPLLKPDEEVELARRVR 106 >UniRef50_B2IZW2 RNA polymerase sigma factor n=14 Tax=Cyanobacteria RepID=B2IZW2_NOSP7 Length = 332 Score = 272 bits (695), Expect = 3e-71, Method: Composition-based stats. Identities = 115/289 (39%), Positives = 185/289 (64%), Gaps = 12/289 (4%) Query: 332 DVSEEVHRALQKLQQIEEETGLTIEQ--VKDINRRMSIGE-------AKARRAKKEMVEA 382 + +++V + + L E+ Q K+ ++IGE + ++AK++M++A Sbjct: 45 NFAKQVQKMMALLATKEKLAIQLKRQPTQKEWIENINIGEKSLLQQLHQGQKAKQKMIQA 104 Query: 383 NLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRS 442 NLRLV+SIAKKY L FLDLIQEG++GL + V+KF+ +GYKFSTY WWIRQAITR+ Sbjct: 105 NLRLVVSIAKKYQRHNLDFLDLIQEGSLGLERGVEKFDPTKGYKFSTYGYWWIRQAITRA 164 Query: 443 IADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAK 502 IA+Q RTIR+P+H+ E +NK+ RI R++ Q++GR PT ++AE + + +IR L +A+ Sbjct: 165 IAEQGRTIRLPIHITEKLNKIKRIQRELTQKLGRTPTAVDIAEELSLDPKQIRDYLLLAR 224 Query: 503 EPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMR 562 +P+S+E +G D+D L D +ED L P A + L+ ++L+ L ++ ++L R Sbjct: 225 QPVSLELRVGSDKDIELQDMLEDNGL-SPELYADHKFLQQNIQNLLSKLNPQQRQILTFR 283 Query: 563 FGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 FG+ + +L E+G++ ++RER+RQIE +AL LR + + S+L Sbjct: 284 FGLTDGNELSLAEIGQRMGISRERVRQIEQQALGSLRRH--KDKIHSYL 330 Score = 49.6 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 2/78 (2%) Query: 83 VLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIED--GINQVQCSVAEYPEA 140 S+ + ++ T D VR Y+RE+G + LLT E EI+ AK+++ + + +A + Sbjct: 10 EESNKKEKLLYTADTVRAYLREIGRIPLLTHEQEINFAKQVQKMMALLATKEKLAIQLKR 69 Query: 141 ITYLLEQYDRVEAEEARL 158 E + + E L Sbjct: 70 QPTQKEWIENINIGEKSL 87 >UniRef50_B2J5S6 RNA polymerase sigma factor n=13 Tax=Cyanobacteria RepID=B2J5S6_NOSP7 Length = 378 Score = 271 bits (694), Expect = 5e-71, Method: Composition-based stats. Identities = 114/284 (40%), Positives = 183/284 (64%), Gaps = 1/284 (0%) Query: 329 KLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVI 388 + + E+ AL E +++ +++ + R AK++M+ +NLRLV+ Sbjct: 94 RFLEEIRELQAALNLKLGQEPTKLEIASELEMTEKQLESRLYQGRVAKRKMIRSNLRLVV 153 Query: 389 SIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQAR 448 SIAK+Y NRG+ FLDLIQEG +GL +A +KF+ +GYKFSTYA WWIRQAITR+IA+ AR Sbjct: 154 SIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQAITRAIANDAR 213 Query: 449 TIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISME 508 TIR+P+H++E +NKL + R++ Q++ R PT E+AE + + ++R++ ++ ++ +S+ Sbjct: 214 TIRLPIHIVEKLNKLKKAQRELKQKLCRNPTEGEMAEALDISVQQLRQLQQLRRQALSLN 273 Query: 509 TPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVL-AGLTAREAKVLRMRFGIDM 567 +G +ED+ L D +ED P +R +VL LT RE V+ +R+G+ Sbjct: 274 HRVGKEEDTELMDLLEDEDNLSPEAKMNENMMRQEIWEVLGDVLTPREKDVISLRYGLTT 333 Query: 568 NTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 + TLEEVG F+++RER+RQI++KA+RKLR P ++ L+ +L Sbjct: 334 SEPCTLEEVGNMFNLSRERVRQIQSKAMRKLRRPHIAKRLKGWL 377 Score = 47.3 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 47/121 (38%), Gaps = 2/121 (1%) Query: 40 QIEDIIQMINDMGIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVR 99 +I + I + + ++ D + ++ EN ++ D V Sbjct: 10 EILENAADIEEPSLDSLDAVADEEPPIVVENLESDERDGDDMAAARPSGYNKTEHDDAVG 69 Query: 100 MYMREMGTVELLTREGEIDIAKRIE--DGINQVQCSVAEYPEAITYLLEQYDRVEAEEAR 157 + +EM LL + E+++A+R+ + I ++Q ++ LE +E E + Sbjct: 70 AFFKEMARYPLLKADEEVELARRVRFLEEIRELQAALNLKLGQEPTKLEIASELEMTEKQ 129 Query: 158 L 158 L Sbjct: 130 L 130 >UniRef50_B0N062 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0N062_9BACT Length = 286 Score = 271 bits (693), Expect = 6e-71, Method: Composition-based stats. Identities = 110/270 (40%), Positives = 182/270 (67%), Gaps = 4/270 (1%) Query: 342 QKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQF 401 + LQ+I +E +T+E+ ++ +R+ G+ + A +++ +ANLR V+S+AK+Y N+GL Sbjct: 20 KYLQEIGKEELITVEEEVELAQRIKKGDQE---ALEKLTKANLRFVVSVAKQYQNQGLSL 76 Query: 402 LDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETIN 461 DLI EGN+GL+KA +KF+ RG+KF +YA WWIRQ+I +++A+Q+R +R+P++ + ++N Sbjct: 77 PDLINEGNLGLIKAAEKFDETRGFKFISYAVWWIRQSILQALAEQSRIVRLPLNQVGSLN 136 Query: 462 KLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGD 521 K+N+ + QE R P+PEELA + +P++K+ L++A +S++ P D ED+ L D Sbjct: 137 KINKAFARFEQEHERTPSPEELANELELPKEKVTDTLRVAGRHVSVDAPFADGEDNSLLD 196 Query: 522 FIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFD 581 + + ESL L LT RE +++ FGI + TLEE+G++FD Sbjct: 197 VLVNPDSPNADRGLINESLSTEVDRALETLTERERDIIKYFFGIGCSE-MTLEEIGEKFD 255 Query: 582 VTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 +TRER+RQI+ KA+R+LRH SRS++L+S+L Sbjct: 256 LTRERVRQIKEKAIRRLRHSSRSKLLKSYL 285 Score = 43.8 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 2/63 (3%) Query: 101 YMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSD 160 Y++E+G EL+T E E+++A+RI+ G + + + +++ + + + L D Sbjct: 21 YLQEIGKEELITVEEEVELAQRIKKGDQEALEKL--TKANLRFVVSVAKQYQNQGLSLPD 78 Query: 161 LIT 163 LI Sbjct: 79 LIN 81 >UniRef50_D1J802 RNA polymerase sigma factor n=1 Tax=Mycoplasma hominis ATCC 23114 RepID=D1J802_MYCHP Length = 538 Score = 271 bits (693), Expect = 6e-71, Method: Composition-based stats. Identities = 120/324 (37%), Positives = 202/324 (62%), Gaps = 16/324 (4%) Query: 303 ITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDIN 362 + + + + + + KL + ++ V ++ + + + LT + + + Sbjct: 210 LKEYNDEDIKLSEEKVYDQDDIKLTNKLTETNDIVKWYMRWIGKYGK--LLTTNEEQALA 267 Query: 363 RRMSIGEA-----KARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD 417 ++M + K ++A+ +V+ NLRLVI+ AK+Y NRGL F+DLI EGN G+MKAV Sbjct: 268 KKMQEAKEANNYYKYKKARDMLVKRNLRLVINNAKRYKNRGLNFIDLISEGNAGIMKAVS 327 Query: 418 KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE 477 K++Y +G+KFSTYATWWIRQAITR++ADQART+R+PVHM+ETINK+ +I R++ QE G Sbjct: 328 KYDYTKGFKFSTYATWWIRQAITRAVADQARTVRVPVHMVETINKILKIERELQQENGYP 387 Query: 478 PTPEELAERML--MPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSA 535 PT EE+A++ +K+R + KI +PIS++ IG +E+S DF++D ++ P A Sbjct: 388 PTDEEIAKKYGGDFTAEKVRYIRKINIDPISLDKNIGKEENSSFSDFVKDESVISPTSYA 447 Query: 536 TTESLRAATHDVLAG-LTAR-EAKVLRMRFGIDM-----NTDYTLEEVGKQFDVTRERIR 588 + E L ++++ L+ + + ++R RFGI+ +TL+E+ K+ +++E++R Sbjct: 448 SHEELSVIINEMIEEGLSDQADRDLIRKRFGINDLKGNKYKPHTLDELSKELGISKEKVR 507 Query: 589 QIEAKALRKLRHPSRSEVLRSFLD 612 Q+E K LRKL+HP + L+ F + Sbjct: 508 QLETKVLRKLKHPQKRRKLKEFFN 531 >UniRef50_P18184 RNA polymerase principal sigma factor hrdC n=5 Tax=Actinomycetales RepID=HRDC_STRCO Length = 339 Score = 271 bits (692), Expect = 8e-71, Method: Composition-based stats. Identities = 108/280 (38%), Positives = 176/280 (62%), Gaps = 4/280 (1%) Query: 332 DVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGE--AKARRAKKEMVEANLRLVIS 389 ++ + ++ + E ET T E RR ++ E + AK MV ANLRLV+S Sbjct: 59 RLATRIEAGVRA--REELETADTGEPAPTPRRRRTLEETVHDGQEAKDHMVRANLRLVVS 116 Query: 390 IAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQART 449 +AK++ +RGL LD+IQEGN+GL++AV+KF++ +G+KFSTYATWWIRQAI R +A ART Sbjct: 117 MAKRHAHRGLPLLDVIQEGNLGLIRAVEKFDHTKGFKFSTYATWWIRQAIERGLATHART 176 Query: 450 IRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMET 509 +R+PVH++E + KL ++ R++ + REPT EE+A + DK+ + ++ ++ +S++T Sbjct: 177 VRLPVHVVEQLQKLAKVERKLRAGLDREPTTEEVAAESGIDVDKVVWLRRVGRDAVSLDT 236 Query: 510 PIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNT 569 P+ + D+ +GD I DT + + A ++L A + + L RE+ +L +R+G+ Sbjct: 237 PVDETGDTVVGDLIPDTEVLRAPEVAEFQALAAELREAVGTLAPRESLILSLRYGLHDGR 296 Query: 570 DYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRS 609 TL++V + +TRER+RQ+E ++L LR P E L Sbjct: 297 PRTLQQVAQHVGLTRERVRQLEKESLAHLRAPENRERLLD 336 >UniRef50_A8ZNW0 RNA polymerase sigma factor n=1 Tax=Acaryochloris marina MBIC11017 RepID=A8ZNW0_ACAM1 Length = 299 Score = 271 bits (692), Expect = 8e-71, Method: Composition-based stats. Identities = 101/252 (40%), Positives = 160/252 (63%), Gaps = 5/252 (1%) Query: 362 NRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY 421 + + + +RAK M+ NLRLV++IAKKY RG+ +DLIQEG++GL +AV+KF+ Sbjct: 49 QAELDQIQKRGKRAKHRMICGNLRLVVTIAKKYQKRGMDLIDLIQEGSLGLERAVEKFDP 108 Query: 422 RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPE 481 +GY+FSTYA WWIRQ+ITR+IA Q+ TIRIPVHM E +N++ R+ R++ Q +GR PT + Sbjct: 109 AKGYRFSTYAYWWIRQSITRAIAMQSHTIRIPVHMTEKLNRIKRVRRELSQTLGRTPTHQ 168 Query: 482 ELAERMLMPEDKIRKVLKIAK--EPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTES 539 E+ + + ++++K L+ A+ P S+ +G D++ LGD +ED + P + + Sbjct: 169 EMVAELGITLEQLQKTLQAAQISNPESLNIRVGKDQEMELGDLLEDLQMPSPNEVVEQDF 228 Query: 540 LRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLR 599 LR A LA L E VL +R+G++ + +L V +Q ++RE +R++E A KL Sbjct: 229 LRNALWSALAQLNDNERTVLILRYGLEDGRERSLYRVSQQMGISREWVRKLEQTAKSKL- 287 Query: 600 HPSRSEVLRSFL 611 +S L+ F+ Sbjct: 288 --LQSGNLQDFM 297 >UniRef50_B9ZQZ1 RNA polymerase sigma factor n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZQZ1_9GAMM Length = 359 Score = 270 bits (691), Expect = 9e-71, Method: Composition-based stats. Identities = 113/274 (41%), Positives = 166/274 (60%), Gaps = 3/274 (1%) Query: 336 EVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYT 395 E+ L+ IE LT E+ + R G+ R + M+E NLRLV+ IA++Y Sbjct: 82 ELDAIQIYLRDIEYRPLLTPEEERKYARLARDGDESGR---RRMIECNLRLVVKIARRYL 138 Query: 396 NRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVH 455 NRGL LDLI+EGN+GLM AV+KF+ RG++FSTYATWWIRQ I R++ +Q RTIRIPVH Sbjct: 139 NRGLPLLDLIEEGNLGLMHAVEKFDPERGFRFSTYATWWIRQTIERALMNQGRTIRIPVH 198 Query: 456 MIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDE 515 + + + RI+R + QE+GR+PT EELA+R+ P I+K+ +++ SM+ P G D Sbjct: 199 VSKELRMHARIARNLTQELGRDPTEEELAQRLGKPVADIQKLRAMSEPSTSMDLPPGPDG 258 Query: 516 DSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEE 575 + L D + D + P + ++ + L L ++ +VL RFG+ TLE+ Sbjct: 259 ERSLTDILADVNAQEPSSLLEDQDIQHLVDEWLGELDYKQREVLVRRFGLHGFERSTLEQ 318 Query: 576 VGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRS 609 VG + VTRER+RQI+ AL++LR S ++ Sbjct: 319 VGAEIGVTRERVRQIQMDALKRLRRLLESRGMKG 352 Score = 44.6 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 2/106 (1%) Query: 57 EEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGE 116 E + DD+ E+ + + ++ D +++Y+R++ LLT E E Sbjct: 45 ESPEEVDDVPAPEDEKELSPEQDVPVRPRTLRDARPAELDAIQIYLRDIEYRPLLTPEEE 104 Query: 117 IDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLI 162 A+ DG + + E + +++ R L DLI Sbjct: 105 RKYARLARDGDESGRRRMIEC--NLRLVVKIARRYLNRGLPLLDLI 148 >UniRef50_D1N7J7 RNA polymerase sigma factor n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7J7_9BACT Length = 428 Score = 270 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 107/268 (39%), Positives = 174/268 (64%), Gaps = 1/268 (0%) Query: 341 LQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQ 400 Q+ + +E+ +T E++ R++ + + +++M+EANLRLVISIA+KY NRGL Sbjct: 152 RQRRKLLEDRFLMTYEELTGEIRKLLEIHEELQNLRQKMIEANLRLVISIAQKYRNRGLP 211 Query: 401 FLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI 460 F DLIQEGN+GL++A++KF++R G KFSTYA+WWI+ I+RSIA+Q+R IRIP HM+ I Sbjct: 212 FNDLIQEGNLGLLRALEKFDFRLGNKFSTYASWWIKHNISRSIAEQSRVIRIPAHMVHAI 271 Query: 461 NKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDED-SHL 519 N + ++ +Q GREP +ELA + MP +I + K++ + IS++ P+ ED + L Sbjct: 272 NSMTWAEQRFIQSHGREPEIDELAAVLEMPVARISAIRKMSCQTISLQAPVSSSEDGAML 331 Query: 520 GDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQ 579 D I D + P+ + L +++L L R+ +++ +RFG+ L ++ ++ Sbjct: 332 EDLIADDSTANPVRDFARKILYDKLYEMLRTLPERDQQIIILRFGLFGQPCLPLVDISRR 391 Query: 580 FDVTRERIRQIEAKALRKLRHPSRSEVL 607 F++TRERIRQ+EAK + LR P++ + L Sbjct: 392 FNLTRERIRQLEAKIIENLRSPAKLKYL 419 >UniRef50_A6DK04 RNA polymerase sigma factor n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DK04_9BACT Length = 404 Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 101/237 (42%), Positives = 155/237 (65%) Query: 371 KARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY 430 + + MVE NLRLVISIA+KY+N FLDLIQEGNIGL+ AV+K++ GY FSTY Sbjct: 164 RMENSVNAMVEGNLRLVISIARKYSNSQEGFLDLIQEGNIGLVSAVEKYDASFGYTFSTY 223 Query: 431 ATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMP 490 ATWWIRQA++R+ + RT+++P +++ +NK+ R R++ Q+ GRE T +E++E + + Sbjct: 224 ATWWIRQAVSRARTELVRTMKLPANIMVKVNKIYRTERELFQKFGREATIDEVSEAVELS 283 Query: 491 EDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAG 550 KIR + ++ ++PIS++T + ++ LGD + + LP + L + +L Sbjct: 284 PAKIRSLKRMCQQPISLQTTVSEEHTGELGDIVSNDDDVLPDAEVEQKQLHESLVAMLDI 343 Query: 551 LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVL 607 L RE ++LRMRFG+ +TLE + +F ++RERIRQIE AL+KLR P+ + L Sbjct: 344 LNEREQEILRMRFGLADGEYHTLENIANEFGISRERIRQIETSALKKLRRPTAVKCL 400 >UniRef50_Q2SRY7 RNA polymerase sigma factor n=5 Tax=Mollicutes RepID=Q2SRY7_MYCCT Length = 505 Score = 269 bits (687), Expect = 3e-70, Method: Composition-based stats. Identities = 140/326 (42%), Positives = 191/326 (58%), Gaps = 61/326 (18%) Query: 346 QIEEETGLTIEQVKDINRRMSIGEAKA-RRAKKEMVEANLRLVISIAKKYTNRGLQFLDL 404 +I + LT +Q + + + + + +++E+NL+LVIS+A+K+ NRGL F DL Sbjct: 177 KIGQAPILTKDQEIMYAKMAVSDDPEDVKEGRNKLIESNLKLVISVARKHLNRGLDFADL 236 Query: 405 IQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLN 464 I+EGNIGLMKAVDKFEY +G+KFSTYATWWI QAITR+IADQARTIRIPVHM+ETINKL Sbjct: 237 IEEGNIGLMKAVDKFEYEKGFKFSTYATWWISQAITRAIADQARTIRIPVHMVETINKLA 296 Query: 465 RISRQMLQEMGREPTPEELAERM--LMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDF 522 R+ RQ+ QE+GREP EE+A R+ + DK+ ++ K++ EP+S+E P GD++D+H GDF Sbjct: 297 RVERQLTQELGREPNAEEIANRVGEGITSDKVIEIKKLSIEPVSLEKPFGDEDDTHFGDF 356 Query: 523 IEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTL--------- 573 +ED + P + E L+ V + RE KV+RMR+GI TL Sbjct: 357 VEDKDMVSPSEYTEKEILKEVMDKVFEDMPPREEKVIRMRYGIVPTRLRTLLRLAQECND 416 Query: 574 ----------EEV-----------------------------------GKQFDVTRERIR 588 EE+ GK+ +VTRERIR Sbjct: 417 TNAKELKQAIEELDIHLDTPIEKVRKFNNEIINNNLAKYDSARTLEEVGKELNVTRERIR 476 Query: 589 QIEAKALRKLRHPS----RSEVLRSF 610 QIEAK +RKL+ PS + L+ F Sbjct: 477 QIEAKTIRKLKQPSPNNKSGKTLKEF 502 >UniRef50_A3ZWN2 RNA polymerase sigma factor n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZWN2_9PLAN Length = 516 Score = 269 bits (687), Expect = 3e-70, Method: Composition-based stats. Identities = 141/543 (25%), Positives = 224/543 (41%), Gaps = 77/543 (14%) Query: 71 TADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQV 130 +E E AA D +R Y+ EM LL+ E +R+ + Sbjct: 38 PREEVGDEDAAPPSKDTTPSDAWDDDALRRYLNEMSRSPLLSANEERLATERVITARKRF 97 Query: 131 QCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDL 190 Q + A+ + + RL V A + + Sbjct: 98 QRRLFGCGVAVKQVEKLIVETLDGSRRLDRTFEITVTSAARKQAEMLKLQQALANLRNAK 157 Query: 191 DDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEIL 250 + D+ + + + N L R ++ Sbjct: 158 QRNADDLQILLSPEPIERRNQAIERLIRRRYQ---------------------------- 189 Query: 251 KLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKM-PKKNFITLFTGN 309 + L ++ + D + +L+ +LC ++ + + NF Sbjct: 190 -----------TAILIEGLTLRIKFLPDILSRLGKLVQELCNQRSDLNSRTNF------- 231 Query: 310 ETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGE 369 A + W +K + E + R+ Sbjct: 232 -----QLPRQGAGAEVWVDKYQEFPETL---------------------VWQYPRIMQAH 265 Query: 370 AKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFST 429 RA++ + ANLRLV+SIAK + RGL +LDLIQEGN+GLM+AV+KF+ GYKF+T Sbjct: 266 EGLCRAQRAITSANLRLVVSIAKSFRGRGLSYLDLIQEGNLGLMRAVEKFDPSLGYKFAT 325 Query: 430 YATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLM 489 YATWWIRQA+ + +ADQ RTIR+P M + I K+N + QE EP E A++ + Sbjct: 326 YATWWIRQAVMKGLADQGRTIRLPARMQDRIQKINVAKAILSQEHRSEPPIELTAKQAEL 385 Query: 490 PEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLA 549 E ++ ++ + +S++ + +++D GD + E SA + L A + +L Sbjct: 386 TEREVVAADRLGRTIMSLD--VSNNDDDSFGDTLASGDAEQ--SSADEQRLPLAINQLLQ 441 Query: 550 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRS 609 LT+RE +++R RFG+ TLEEV + F VTRERIRQIE+ A+RKLR P L Sbjct: 442 ELTSREQEIVRRRFGMFDGRVQTLEEVSQAFSVTRERIRQIESAAIRKLRQPHLIRKLDD 501 Query: 610 FLD 612 FL+ Sbjct: 502 FLE 504 >UniRef50_Q03065 RNA polymerase sigma-B factor n=68 Tax=cellular organisms RepID=RPSB_ANASP Length = 332 Score = 268 bits (686), Expect = 4e-70, Method: Composition-based stats. Identities = 109/280 (38%), Positives = 180/280 (64%), Gaps = 7/280 (2%) Query: 334 SEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKK 393 EE+ LQ+ ++E ++++ + ++ + AK++M++ANLRLV+SIAKK Sbjct: 60 KEELAEKLQREPTLQE----WADKMQLKEDVLLQQLSQGQIAKQKMIQANLRLVVSIAKK 115 Query: 394 YTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIP 453 Y R L+FLDLIQEG +GL + V+KF+ GYKFSTYA WWIRQ ITR+IA Q+RTIR+P Sbjct: 116 YQKRNLEFLDLIQEGALGLERGVEKFDPTLGYKFSTYAYWWIRQGITRAIAQQSRTIRLP 175 Query: 454 VHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGD 513 +HM + +NK+ + R++ Q++G E+A+ + + +IR+ L++ ++P+S++ IG Sbjct: 176 IHMADKLNKIKCVQRELSQKLGYIAGVTEIAQALNLEPSQIREYLQLVRQPVSLDMRIGF 235 Query: 514 DEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTL 573 ++D+ L D ++D + P A E L H++LA LT ++ +VL +RFG+ + TL Sbjct: 236 EQDTQLQDLLKDDGM-SPERYAERELLYQDIHNLLAKLTPQQKEVLILRFGLAGGCELTL 294 Query: 574 EEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 ++ ++ ++RER+RQ+E +AL LR RS+L D Sbjct: 295 VQISQRMGISRERVRQVEKQALTLLRRYGIDS--RSYLAD 332 Score = 46.5 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Query: 83 VLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGIN--QVQCSVAEYPEA 140 L S +E T D V +Y+ ++G V LL+ E EI A++++ + + +AE + Sbjct: 10 KLKSKNNEFSYTADAVSIYLHKIGRVPLLSHEQEIFFAQQVQQMMVMFTAKEELAEKLQR 69 Query: 141 ITYLLEQYDRVEAEE 155 L E D+++ +E Sbjct: 70 EPTLQEWADKMQLKE 84 >UniRef50_D1CDN0 RNA polymerase sigma factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CDN0_THET1 Length = 344 Score = 268 bits (685), Expect = 5e-70, Method: Composition-based stats. Identities = 109/297 (36%), Positives = 184/297 (61%), Gaps = 5/297 (1%) Query: 315 WFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARR 374 + +E+ +++ + R + Q+++ + ++ E++ D+ + + G+A Sbjct: 52 YLREIGRAQLLTAEEEVALAQAIERGQEAEQRLQSD-DISPEELDDLKKAVEEGKA---- 106 Query: 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 434 A+ +++E NLRLV+SIA++Y G+ DLI+EGN+GLM+A +KF++RRG++FSTYATWW Sbjct: 107 ARHKLIEHNLRLVVSIARRYVGHGMPLADLIEEGNLGLMRAAEKFDWRRGFRFSTYATWW 166 Query: 435 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKI 494 IRQA+TR +A+ RTIR+PVH+ E + K+ R ++++ E+GREPT +ELAE + ++I Sbjct: 167 IRQAVTRGLAEGGRTIRLPVHVGEALTKIGRETQRLSLELGREPTNQELAEATGLSPERI 226 Query: 495 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAR 554 + ++ P+S+E P+G+D +++LG+ +EDT P A L L L R Sbjct: 227 DEYKNASRLPLSLEAPLGEDGETNLGEVLEDTEAANPEHIADHTMLGEDIKRALERLNER 286 Query: 555 EAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 + ++ MR+G+ TLE G++ VTRER RQIE +AL +LR + L S + Sbjct: 287 QRAIIIMRYGLYGGQPMTLEAAGRKLGVTRERARQIEQEALNRLRQSDAKQFLASHV 343 Score = 52.3 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 1/102 (0%) Query: 61 DADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA 120 D D ++ ++ ++ A+ + L E + D + +Y+RE+G +LLT E E+ +A Sbjct: 12 DNLDEIILDSELEDLEADLSPASLLEEEMDRELIGDSLGIYLREIGRAQLLTAEEEVALA 71 Query: 121 KRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLI 162 + IE G + + + + L + VE +A LI Sbjct: 72 QAIERG-QEAEQRLQSDDISPEELDDLKKAVEEGKAARHKLI 112 >UniRef50_B3R1P5 RNA polymerase sigma factor n=78 Tax=Betaproteobacteria RepID=B3R1P5_CUPTR Length = 395 Score = 268 bits (685), Expect = 5e-70, Method: Composition-based stats. Identities = 103/270 (38%), Positives = 160/270 (59%), Gaps = 5/270 (1%) Query: 341 LQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQ 400 L +I + L+ + + G+ A++ M+E NLRLV+SIAK Y NRG+ Sbjct: 124 QHYLNRISIKPLLSAPEELHFSTLAKDGDF---AARQVMIERNLRLVVSIAKGYLNRGVP 180 Query: 401 FLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI 460 LDLI+EGN+GLM A++KF+ RG++FSTYATWWIRQ+I R+I +QART+R+PVH+I + Sbjct: 181 LLDLIEEGNLGLMHAIEKFDPSRGFRFSTYATWWIRQSIERAIMNQARTVRLPVHVIREL 240 Query: 461 NKLNRISRQMLQ--EMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSH 518 N++ R R + + GR+ + E++A + D+++ VL + + S++TP D S Sbjct: 241 NQVLRAKRHLEKGGTDGRDASLEDIAHLLGKTPDEVQDVLALNEHTTSLDTPFDLDPGSS 300 Query: 519 LGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGK 578 L DF+ D P L LA L+ + V+ RFG++ TLEE+ + Sbjct: 301 LLDFLSDEHNAAPDQEVAHRELEGLMKLWLARLSEKHRYVVERRFGLNHIEPATLEELAE 360 Query: 579 QFDVTRERIRQIEAKALRKLRHPSRSEVLR 608 + +TRER+RQI+ +AL KL+ S+ +R Sbjct: 361 EMGLTRERVRQIQQEALVKLKRHFASQGVR 390 >UniRef50_B8KI17 RNA polymerase sigma factor n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KI17_9GAMM Length = 367 Score = 267 bits (682), Expect = 1e-69, Method: Composition-based stats. Identities = 100/271 (36%), Positives = 169/271 (62%), Gaps = 3/271 (1%) Query: 337 VHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTN 396 + L +I L+ ++ K R + G+ A+K M+E+NLRLV++IA++Y + Sbjct: 92 LDPTQLYLNEIGFVPLLSADEEKHYARLVQKGDE---AARKRMIESNLRLVVNIARRYLH 148 Query: 397 RGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHM 456 RG+ LDLI+EGN+GLM+AV+KF+ RG++FSTYATWWIRQ I R I +QARTIR+P+H+ Sbjct: 149 RGMSLLDLIEEGNLGLMRAVEKFDPERGFRFSTYATWWIRQTIERGIMNQARTIRLPIHV 208 Query: 457 IETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDED 516 ++ +N R +R++ Q++ +PT +E+A R ++ +++ + + SM+ P+G + D Sbjct: 209 VKDLNGCLRAARELTQQLDHDPTTQEIASRTHKTATEVSRLMGLNERVSSMDAPLGPNSD 268 Query: 517 SHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEV 576 S + + I D P + + + + L L+ ++ +V+ RFG+ TLEEV Sbjct: 269 SSVAETIADEHGCDPSEQIQDDDVHDSVAHWLDELSEKQREVVVRRFGLLGYDSCTLEEV 328 Query: 577 GKQFDVTRERIRQIEAKALRKLRHPSRSEVL 607 G++ +TRER+RQI+ +AL++LR + L Sbjct: 329 GQEIGLTRERVRQIQVEALKRLRRILERQGL 359 Score = 48.8 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 2/91 (2%) Query: 72 ADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQ 131 ADE + + T DP ++Y+ E+G V LL+ + E A+ ++ G + Sbjct: 69 ADEPVTAQSPFNDTDDHDARQITLDPTQLYLNEIGFVPLLSADEEKHYARLVQKGDEAAR 128 Query: 132 CSVAEYPEAITYLLEQYDRVEAEEARLSDLI 162 + E + ++ R L DLI Sbjct: 129 KRMIES--NLRLVVNIARRYLHRGMSLLDLI 157 >UniRef50_Q39477 RNA polymerase sigma factor (Fragment) n=1 Tax=Cyanidium caldarium RepID=Q39477_CYACA Length = 609 Score = 267 bits (682), Expect = 1e-69, Method: Composition-based stats. Identities = 101/306 (33%), Positives = 161/306 (52%), Gaps = 45/306 (14%) Query: 346 QIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLI 405 + + ++ E++ R A+RA++ +V ANLRLV+S+AK++TNRGL DLI Sbjct: 311 EWAKALNMSAEELTRNLLR-------AQRARESLVAANLRLVVSVAKQFTNRGLSMQDLI 363 Query: 406 QEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNR 465 QEG+IGL+K ++F+YR G++FSTYA WWIRQA+ R+IAD +R IRIP + + ++ R Sbjct: 364 QEGSIGLIKGAERFDYRTGFRFSTYAMWWIRQAMQRAIADTSRPIRIPSTITDLSVQIYR 423 Query: 466 ISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKE--PISMETPIGDD--------- 514 ++ +GR+PT ELA+ + + +++ V + +S++ P+ Sbjct: 424 ARLELSSTLGRDPTDAELADFLDISVQRLQDVKLYTNQSATVSLDAPVSRQVTNTCIKSK 483 Query: 515 ---------------------------EDSHLGDFIEDTTLELPLDSATTESLRAATHDV 547 D LGD ++ P +R Sbjct: 484 GTGDTDVFSSKADGKLSKNGYGSRHKLGDFTLGDTVQTDESVSPEHMMADSLMRDDIECA 543 Query: 548 LAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVL 607 L+ L E +V+RMRFG+D +++EV + V RIR+IEA+ALRKLRHPS +L Sbjct: 544 LSLLNPYEREVIRMRFGLDDGRMKSVDEVCAYYCVQTSRIRRIEARALRKLRHPSVWHML 603 Query: 608 RSFLDD 613 R ++ + Sbjct: 604 RDYISN 609 >UniRef50_B9M4Z2 RNA polymerase sigma factor n=12 Tax=Desulfuromonadales RepID=B9M4Z2_GEOSF Length = 358 Score = 266 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 116/265 (43%), Positives = 180/265 (67%), Gaps = 3/265 (1%) Query: 343 KLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL 402 L++I++ LT ++ K++ R+ G+ + A+ +M+E+NLRLV+ IAK+Y NRGL FL Sbjct: 88 YLREIQKTKLLTADEEKELAARIDRGD---KAARDKMIESNLRLVVKIAKRYINRGLPFL 144 Query: 403 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 462 DLI+EGN+GL+KAV++F+ + +FSTYATWWIRQ+I R++ +Q+RTIR+PVH+ + INK Sbjct: 145 DLIEEGNMGLIKAVERFKLSKECRFSTYATWWIRQSIERALVNQSRTIRLPVHVSDDINK 204 Query: 463 LNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDF 522 + RI+R++LQ++ REP+ +E+A M + IR+++ + K+ S+E P+G++ D L D Sbjct: 205 MLRITRELLQKINREPSIKEVATAMEVNSAYIRRLMVLLKKTYSIERPMGENNDYFLIDT 264 Query: 523 IEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDV 582 IEDT+ P + + L+ E K+L +RFG+D TL+ +G+ F V Sbjct: 265 IEDTSTVSPAELLEDVNRYEMVSKWFDTLSDNEKKILTLRFGLDDKDPQTLDTIGRSFGV 324 Query: 583 TRERIRQIEAKALRKLRHPSRSEVL 607 TRERIRQIEAK+L KLR + L Sbjct: 325 TRERIRQIEAKSLEKLRKIMEATEL 349 Score = 47.3 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 42/104 (40%), Gaps = 2/104 (1%) Query: 59 APDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID 118 P+ + + +E + + + D +++Y+RE+ +LLT + E + Sbjct: 46 EPEVEPDAVELEQVEEVEEHEEVEEEEIKVAVVEHFDDAIKLYLREIQKTKLLTADEEKE 105 Query: 119 IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLI 162 +A RI+ G + + E + +++ R DLI Sbjct: 106 LAARIDRGDKAARDKMIES--NLRLVVKIAKRYINRGLPFLDLI 147 >UniRef50_A8RNE4 RNA polymerase sigma factor n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RNE4_9CLOT Length = 298 Score = 266 bits (679), Expect = 3e-69, Method: Composition-based stats. Identities = 121/273 (44%), Positives = 171/273 (62%), Gaps = 8/273 (2%) Query: 341 LQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNR--G 398 L+Q LT E+ ++ + G + A+++M+ +NLRLVI+ AKKY Sbjct: 30 QWYLKQAGVGPLLTKEEEIELAYLIQEGSDE---ARQKMISSNLRLVINQAKKYVTYTQS 86 Query: 399 LQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIE 458 L LDLIQEGN+GL+KAV+K+ G++FSTYA+WWI+QAITR+I+ + IR+PVH E Sbjct: 87 LTLLDLIQEGNLGLIKAVEKYNPELGFRFSTYASWWIKQAITRAISVLDKAIRLPVHFCE 146 Query: 459 TINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSH 518 I K+ R + +++Q+ TPE+L + E KI K+L IS+ETP+G E++ Sbjct: 147 DIQKVKRATHEIMQQNDIV-TPEKLKDITGFSEGKIEKILMNMNHTISLETPVG--EEAT 203 Query: 519 LGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGK 578 LGDF+EDT + A +++ + L RE +L +RFG++ +TLEEVGK Sbjct: 204 LGDFVEDTLTPSIEEQAMENAMQREISRQMECLRPREQTILALRFGLNGQNPHTLEEVGK 263 Query: 579 QFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 Q VTRERIRQIE KALRKLRHP+RS LR F+ Sbjct: 264 QMGVTRERIRQIEMKALRKLRHPNRSRYLREFI 296 >UniRef50_A6G031 RNA polymerase sigma factor n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G031_9DELT Length = 431 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 107/283 (37%), Positives = 175/283 (61%), Gaps = 2/283 (0%) Query: 327 SEKLHDVSEEVHRALQKLQQIEEETGLT-IEQVKDINRRMSIGEAKARRAKKEMVEANLR 385 ++ L D + R + ++ + + + K R AK + V+ANLR Sbjct: 148 ADALADEVAAILRGQRHGLDLDVRPPREGSKPYAEYVANVRRSSRKLRSAKNKFVKANLR 207 Query: 386 LVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIAD 445 LV+SIA+++ + + DLIQEGNIGLMKAVD+F+YR+G++FSTY +WWIR AI+R+IAD Sbjct: 208 LVVSIARRFNHGRMPLQDLIQEGNIGLMKAVDRFDYRKGFRFSTYGSWWIRHAISRAIAD 267 Query: 446 QARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKV-LKIAKEP 504 + R +R+PVHMI+ +K+N+ R++ ++GREPT EELA+ + KI ++ + P Sbjct: 268 KGRQVRLPVHMIDAYHKVNKARRELEAKLGREPTREELAQHTGIALAKIERMGTMLVDNP 327 Query: 505 ISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFG 564 IS++ P+ D + +GDF+ED E P + ++L +++ L EA ++R RFG Sbjct: 328 ISLDKPVSDADGRKMGDFLEDENAEDPGEGLEADALNEQVKRLVSKLRPIEADIIRKRFG 387 Query: 565 IDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVL 607 + + + TL+E+G Q+ ++RERIRQ++ +AL K+R + L Sbjct: 388 LIDDEELTLKEIGGQYSLSRERIRQLQEQALGKIRRELKRLEL 430 >UniRef50_A9G730 RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G730_SORC5 Length = 463 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 104/229 (45%), Positives = 150/229 (65%), Gaps = 1/229 (0%) Query: 380 VEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAI 439 V ANLRLV + A++ +RG+ LDLIQEGN+GL++A +KF+YRRGY+FSTYA WWI+QA+ Sbjct: 231 VRANLRLVAAAARQLRHRGVPLLDLIQEGNLGLIRAAEKFDYRRGYRFSTYAMWWIKQAL 290 Query: 440 TRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLK 499 +R++ Q + IR+PVH+ ET + + R++ QE RE PEE+AER + +K++ + + Sbjct: 291 SRALLYQGQVIRVPVHIAETRRRALQARRELEQEHAREAAPEEVAERSGLSMEKLQALRE 350 Query: 500 IAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVL 559 +A P+ ++ P+GDD+ + GDF P + L A +L LT RE VL Sbjct: 351 MALPPVYLDAPVGDDDGARQGDFFASEGA-APDELLVHRRLHAQVSALLESLTPRERDVL 409 Query: 560 RMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLR 608 R+RFG+D +TL E+G F V+RER+RQIE AL KLR SR + L Sbjct: 410 RLRFGLDGGQPHTLAEIGGMFSVSRERVRQIEESALSKLRTLSRRQALE 458 Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 47/323 (14%), Positives = 102/323 (31%), Gaps = 25/323 (7%) Query: 47 MINDMGIQVMEEAPDADDLMLAE----NTADEDAAEAAAQVLSSVESEIGRTTDPVRMYM 102 ++ + +ME + E +T ++ A + D +Y+ Sbjct: 10 LLGEAETTIMEGRGAVAETRAEEPIGADTRPPPSSRRGAPTSQRAAPPARPSEDVAAVYL 69 Query: 103 REMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLI 162 +E+ L+RE E+++ +RIE + + P A+ L D V A +SDL+ Sbjct: 70 QEISASAPLSRELEVELGRRIESAERAMVEAWVASPVALRALAALADDVRAGRVDMSDLL 129 Query: 163 TGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFA 222 +A D L++ + E + S D L+ Sbjct: 130 LNADGGDAPSDATSVRMARLLGLARSLAEAGRTEASGQRARAALSAGLS-DVRLSPRVDE 188 Query: 223 ELRAQYVVTRDTIKAKGRS------HATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRV- 275 + + GR A + R + +R Sbjct: 189 RIERALSAAIPAVDRLGRQAIEGTLSAMRAARREAAEARAEMVRANLRLVAAAARQLRHR 248 Query: 276 ---MMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHD 332 ++D ++ +++ E+ + + + W A++ + ++ Sbjct: 249 GVPLLDLIQEGNLGLIR-AAEKFDYRRGYRFSTYA-----MWWIKQALSRALLYQGQVIR 302 Query: 333 VSEEV----HRALQKLQQIEEET 351 V + RALQ +++E+E Sbjct: 303 VPVHIAETRRRALQARRELEQEH 325 >UniRef50_A5IY54 RNA polymerase sigma factor n=2 Tax=Mycoplasma RepID=A5IY54_MYCAP Length = 509 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 127/320 (39%), Positives = 199/320 (62%), Gaps = 14/320 (4%) Query: 303 ITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDIN 362 + F+ E + + KL + ++ V ++ + + + L E+ ++ Sbjct: 194 LEDFSAEEIDLS--ANLSVKKEDLKNKLTETNDIVKWYMRWIGKYGK--LLQPEEEFELA 249 Query: 363 RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR 422 M G K +RA+ ++++ NLRLVI+ AKKY NRGL F+DLI EGN G++KAV K+ Sbjct: 250 TEMDKGGFKGKRARDKLIKRNLRLVINNAKKYKNRGLSFIDLISEGNSGIIKAVQKYNVN 309 Query: 423 RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEE 482 +G+KFSTYATWWIRQAITR++ADQ+RT+R+PVHM+ETINK+ +I R++ QE G +PT EE Sbjct: 310 KGFKFSTYATWWIRQAITRAVADQSRTVRVPVHMVETINKITKIERELQQENGVDPTDEE 369 Query: 483 LAERML--MPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESL 540 +A+R +K+R + KI +PIS++ IG + DS DF++D ++ P+D A+ E L Sbjct: 370 IAQRYGNDFTAEKVRHIRKINIDPISLDKQIGKENDSSFSDFVKDESVVNPVDYASHEEL 429 Query: 541 RAATHDVL-AGLTAREAKVLRMRFGID------MNTDYTLEEVGKQFDVTRERIRQIEAK 593 + +L L A E +++ R+G+ ++LEE+ + +V++ERIRQIE K Sbjct: 430 VETLNAILKDTLDADEYELICKRYGVGFDNNGEKYKVFSLEELALERNVSKERIRQIENK 489 Query: 594 ALRKLR-HPSRSEVLRSFLD 612 LRKL+ P RS L+ F++ Sbjct: 490 ILRKLKSSPERSRYLKVFME 509 >UniRef50_Q1AV06 RNA polymerase sigma factor n=3 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AV06_RUBXD Length = 304 Score = 264 bits (676), Expect = 6e-69, Method: Composition-based stats. Identities = 113/268 (42%), Positives = 165/268 (61%), Gaps = 4/268 (1%) Query: 343 KLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL 402 L +I LT + +++RR G+ K A+++++E NLRLV+S+AKKY GL F Sbjct: 38 YLDRIGRWRLLTRDGEIELSRRAKKGDRK---ARQKLIEKNLRLVVSVAKKYRGYGLPFE 94 Query: 403 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 462 DLIQEGNIGLMKAV+KF+ RG++FSTYATWWIRQA+ R++AD+ RTIR+PVHM E I K Sbjct: 95 DLIQEGNIGLMKAVEKFDPERGFRFSTYATWWIRQAVQRAVADKGRTIRVPVHMTEKIRK 154 Query: 463 LNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDED-SHLGD 521 ++R ++ E+ REPT EE+A R+ + +R + + S++ P+ +E S LGD Sbjct: 155 VSRTFNELSLELEREPTDEEIARRLEWDVEDVRLTISAMPDATSLDQPVSSEESASELGD 214 Query: 522 FIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFD 581 FIED D+ E + + + L R VL R+G+D TL E+G + Sbjct: 215 FIEDERTSDTPDTVLKELESSQLKEAIERLPERARYVLVRRYGLDDREPATLAELGDELK 274 Query: 582 VTRERIRQIEAKALRKLRHPSRSEVLRS 609 ++RER+RQ++ +A R L+ R RS Sbjct: 275 ISRERVRQLQREAERLLKAGIRRTSPRS 302 >UniRef50_D0L243 RNA polymerase sigma factor n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L243_HALNC Length = 343 Score = 264 bits (675), Expect = 6e-69, Method: Composition-based stats. Identities = 105/271 (38%), Positives = 168/271 (61%), Gaps = 3/271 (1%) Query: 334 SEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKK 393 SE V L+ +E E LT E+ +RR G+ A+++M+ NLRLVI IA++ Sbjct: 65 SESVDPVRLYLRDVETERLLTAEEEVIYSRRAQSGDE---SARQKMIVCNLRLVIKIARR 121 Query: 394 YTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIP 453 Y NRGL LDLI+EGNIGLM+AV+KF+ RG++FSTYATWWIRQ I R + +Q+RT+R+P Sbjct: 122 YMNRGLDLLDLIEEGNIGLMRAVEKFDPERGFRFSTYATWWIRQTIERGLMNQSRTVRLP 181 Query: 454 VHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGD 513 VH+++ ++ NR +R++ Q E T E++A+ + P +++ K++ + S ++P+ Sbjct: 182 VHVVKEVHTFNRAARKIAQNQNAEVTAEQIADHLDRPVNEVLKIMAFNERQSSFDSPLKG 241 Query: 514 DEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTL 573 D + L D I D P + + ++A L +++ +VL R+G+ +TL Sbjct: 242 DGEFSLLDLIPDQESNQPDELLQDAGVHGFLDQLIAQLESKQREVLVRRYGLRGYETHTL 301 Query: 574 EEVGKQFDVTRERIRQIEAKALRKLRHPSRS 604 EEVG VTRER+RQI+ +A+R+L+ ++ Sbjct: 302 EEVGNHLGVTRERVRQIQLEAVRRLKSLAKK 332 Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 50/112 (44%), Gaps = 6/112 (5%) Query: 55 VMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTT----DPVRMYMREMGTVEL 110 + + D ++L+ ++ +D ++ + + + + DPVR+Y+R++ T L Sbjct: 24 IAPDPVDEEELLAVDDVELDDDIDSPEKNEEELTTTFSASDSESVDPVRLYLRDVETERL 83 Query: 111 LTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLI 162 LT E E+ ++R + G + + + +++ R L DLI Sbjct: 84 LTAEEEVIYSRRAQSGDESARQKMIVC--NLRLVIKIARRYMNRGLDLLDLI 133 >UniRef50_Q6A8Y3 RNA polymerase principal sigma factor HrdD n=2 Tax=Propionibacterium acnes RepID=Q6A8Y3_PROAC Length = 312 Score = 264 bits (674), Expect = 8e-69, Method: Composition-based stats. Identities = 96/268 (35%), Positives = 158/268 (58%), Gaps = 3/268 (1%) Query: 333 VSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAK 392 ++ + + +E T + +++ A A V ANLRLV+S+A+ Sbjct: 40 LARRIEAGVFARAILEGHAETTSDTTTKELHQIA---ADGDEALAHFVRANLRLVVSVAR 96 Query: 393 KYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRI 452 KY + LDL+QEGN GL++AV+KF+Y +G+KFSTYATWW+RQAI+R IA Q R +R+ Sbjct: 97 KYGRSQMPLLDLVQEGNTGLIRAVEKFDYAKGFKFSTYATWWVRQAISRGIAQQGRIVRL 156 Query: 453 PVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIG 512 PVH+ E +N+++ R + +++GREP E+A+ + + E+++ ++++ ++ +S++ P+ Sbjct: 157 PVHVAEQVNQVSAARRNLERQLGREPETFEIADELEITEERVIELIRFGRDHVSLDAPVE 216 Query: 513 DDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYT 572 DD D+ LGD I T P D R+ +L L R A V+R R+G+ Sbjct: 217 DDGDTSLGDLIARETSPGPDDIVLDAEDRSRLEGLLDDLDERSADVVRRRYGLVDGRQAK 276 Query: 573 LEEVGKQFDVTRERIRQIEAKALRKLRH 600 L ++GK + +T ER+RQIE AL +R Sbjct: 277 LADIGKVWGITAERVRQIERAALASMRQ 304 >UniRef50_Q2T2N0 RNA polymerase sigma factor n=32 Tax=pseudomallei group RepID=Q2T2N0_BURTA Length = 483 Score = 263 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 111/278 (39%), Positives = 176/278 (63%), Gaps = 6/278 (2%) Query: 335 EEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKY 394 + + RA+++L + + GEA+ A M EANLRLV+SIA+KY Sbjct: 209 DAMRRAMRRLPTP------PEQGDAGALPAFADGEARISAATARMAEANLRLVLSIARKY 262 Query: 395 TNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPV 454 +RGL DL+QEGN+GL++A++KFEYRRG+KFSTYATWWIRQAI+R+IAD+ARTIR+PV Sbjct: 263 ASRGLDLADLLQEGNLGLLRAIEKFEYRRGFKFSTYATWWIRQAISRAIADRARTIRVPV 322 Query: 455 HMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDD 514 H+ + ++ +++ ++ + G + EL+E + +++R VL + +EP S+ P+GDD Sbjct: 323 HVGDEARRVRKVADRIERRSGARASLAELSEATGLSAERLRAVLMLPREPRSLNAPLGDD 382 Query: 515 EDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLE 574 + + GD +ED + D+ + +L ++A+EA +LR RFGI + ++ E Sbjct: 383 DQAEFGDIVEDASTPSLFDALAQGQMCDVVTSLLKTMSAQEADILRRRFGIGGDEPWSYE 442 Query: 575 EVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 ++ Q V+RE+IR+IE +AL+ LR + + R FLD Sbjct: 443 QIAAQAGVSREQIRRIEKRALQTLRITADACNARDFLD 480 Score = 51.9 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 54/142 (38%), Gaps = 11/142 (7%) Query: 6 QSQLKLLVTRGKEQGYLTYAEVNDHLPE----------DIVDSDQIEDIIQMINDMGIQV 55 + + L+ + YAE+ D D+ + + ++ G Sbjct: 11 EQGIDRLLELACARDDTEYAELADEFASAPSDTHAHAHDLGEPEFLDR-HASDESAGTGS 69 Query: 56 MEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREG 115 + P A+ + +++ + + +TDP+ +++R M V LLT Sbjct: 70 FGDKPTRAAHADADWHDGDVVDAQSSEPSDATPDDTAVSTDPLALFVRRMHAVPLLTHAQ 129 Query: 116 EIDIAKRIEDGINQVQCSVAEY 137 EI +A IE G QV ++AE Sbjct: 130 EIALATEIEAGREQVLQALAET 151 >UniRef50_Q1ASS7 RNA polymerase sigma factor n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1ASS7_RUBXD Length = 282 Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats. Identities = 109/273 (39%), Positives = 169/273 (61%), Gaps = 4/273 (1%) Query: 342 QKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQF 401 Q L +I E LT + +++RR G+ A++ ++E+NLRLV++IAK+Y RG+ F Sbjct: 11 QYLGRIREGRLLTAGEEVELSRRARAGD---GAARRRLIESNLRLVVAIAKRYRGRGVPF 67 Query: 402 LDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETIN 461 DLIQEGN GL++AV+KF+ G +FSTYATWWIRQA+TR++ADQ R +R+P H+++++ Sbjct: 68 EDLIQEGNAGLIRAVEKFDPEMGNRFSTYATWWIRQAVTRAVADQGRAVRLPAHVVDSVY 127 Query: 462 KLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDED-SHLG 520 +L R + E+GREPT EE+A R+ ++ R++ ++++ S+ +GD+ED + LG Sbjct: 128 RLRRAESALSVELGREPTDEEVAGRLGTSPEEARRLREVSQPISSISARLGDEEDGAELG 187 Query: 521 DFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQF 580 D + D R + + L REA+VLR+R G+D TL EV + Sbjct: 188 DLLPDEAASEEYARVEAGPWRGVLREAVGSLPEREARVLRLRHGLDGERARTLREVSEIL 247 Query: 581 DVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 +++ER RQ+E KALR LR + LR L + Sbjct: 248 GISQERARQVELKALRTLRSGRYAGSLRRGLSE 280 >UniRef50_A9B1P1 RNA polymerase sigma factor n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B1P1_HERA2 Length = 303 Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats. Identities = 109/227 (48%), Positives = 152/227 (66%) Query: 373 RRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT 432 A +++V ANLRLV+SIAK+Y GL F DLIQEGNIGLM A+++F+ +G +FSTYAT Sbjct: 72 EPAHEQLVRANLRLVVSIAKRYRGFGLPFQDLIQEGNIGLMNAIERFDATKGVRFSTYAT 131 Query: 433 WWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPED 492 WWIRQAITRS+A+Q R IR+PVH E + K+ RI ++LQ +GREP+ E++ + +PE+ Sbjct: 132 WWIRQAITRSLANQGRLIRLPVHRWELLIKVRRIETKLLQALGREPSANEISTALGVPEE 191 Query: 493 KIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLT 552 KI +L IA+ PIS+ TP ++ D LGD + D E L+ T T +L L+ Sbjct: 192 KICDLLSIAQVPISLATPKNEETDMLLGDSLPDEDWEDELECLLTSIDAQYTRAMLNQLS 251 Query: 553 AREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLR 599 +E +VL +R+G+ +L EVG TR+RI+QIEA AL+ LR Sbjct: 252 EQEQEVLTLRYGLKDGKSRSLSEVGAVVGRTRQRIQQIEAGALQVLR 298 >UniRef50_Q73P62 RNA polymerase sigma factor n=2 Tax=Treponema RepID=Q73P62_TREDE Length = 286 Score = 262 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 98/287 (34%), Positives = 173/287 (60%), Gaps = 4/287 (1%) Query: 326 WSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLR 385 ++ ++ E++ L++I + LT E+ + G+ AK +V +NLR Sbjct: 2 YNRTKNNYDAEMNSLATYLKEINQIPLLTAEEEIKYAKLAEKGDED---AKNMLVNSNLR 58 Query: 386 LVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIAD 445 V+++AKKY N+GL +DLI EGNIGLM A ++F+ +GYKF +YA WWI+Q+I ++I + Sbjct: 59 FVVNVAKKYQNQGLPLMDLISEGNIGLMNAAERFDVSKGYKFISYAVWWIKQSILKAICE 118 Query: 446 QARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPI 505 ++R IR+P++ + ++ + +++ E+A + M + ++ A+EPI Sbjct: 119 KSRMIRLPLNRANELVQIEKAKKEIDFSGNETKELNEIAGILNMDNSMVHTIMNAAREPI 178 Query: 506 SMETPIGDD-EDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFG 564 S++ P+ D+ S + DF++D T ++P D A SLR +++L L REA+++R RFG Sbjct: 179 SIDAPVFDEPGSSSVNDFLQDETHQMPEDYAMDMSLRDEVNELLKNLDDREAEIIRYRFG 238 Query: 565 IDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 + +L+EVG F++T+ERIRQIE KAL++L+ P+ + L ++ Sbjct: 239 LGGYAPLSLKEVGLIFNLTKERIRQIEKKALQQLKKPAEKQKLAVYV 285 Score = 44.2 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 2/68 (2%) Query: 96 DPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEE 155 + + Y++E+ + LLT E EI AK E G + + + +++ + + + Sbjct: 14 NSLATYLKEINQIPLLTAEEEIKYAKLAEKGDEDAKNMLVNS--NLRFVVNVAKKYQNQG 71 Query: 156 ARLSDLIT 163 L DLI+ Sbjct: 72 LPLMDLIS 79 >UniRef50_Q0F2K4 RNA polymerase sigma factor n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F2K4_9PROT Length = 282 Score = 262 bits (669), Expect = 4e-68, Method: Composition-based stats. Identities = 102/259 (39%), Positives = 161/259 (62%), Gaps = 4/259 (1%) Query: 343 KLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL 402 +++I LT + + +R+ G+ + A MV+ANLRLV+ I+++Y NRG+ Sbjct: 14 YMREISRYELLTAAEEIALAKRIGAGDKE---AHHYMVQANLRLVVKISRRYMNRGVALA 70 Query: 403 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 462 DLI+EGN+GL++AV+KF+ G +FSTYATWWIRQA+ R+I +Q+RTIR+PVH+ + + Sbjct: 71 DLIEEGNLGLIRAVEKFDVTHGCRFSTYATWWIRQAVERAIMNQSRTIRVPVHVGKELYA 130 Query: 463 LNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDF 522 L + + ++ E+ R+PT E+AE M + +I++++ A S + + DD D L D Sbjct: 131 LTKHTNRLRSELERDPTDVEIAEAMGVSVQRIQELMGAAVRTDSADDMLHDDSDFTLYDV 190 Query: 523 IEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDM-NTDYTLEEVGKQFD 581 D E P D T ++ L +E +V+R+R+G+D +TLE +G+Q Sbjct: 191 TADEAAESPGDQMQTVLRNEILQVWMSKLEKKEREVVRLRYGLDDAGDPWTLEMIGEQLG 250 Query: 582 VTRERIRQIEAKALRKLRH 600 VTRERIRQI+ +AL+KLR Sbjct: 251 VTRERIRQIQVQALQKLRR 269 Score = 44.6 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 2/67 (2%) Query: 96 DPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEE 155 +P+ +YMRE+ ELLT EI +AKRI G + + + + +++ R Sbjct: 9 EPMAIYMREISRYELLTAAEEIALAKRIGAGDKEAHHYMVQA--NLRLVVKISRRYMNRG 66 Query: 156 ARLSDLI 162 L+DLI Sbjct: 67 VALADLI 73 >UniRef50_B9L491 RNA polymerase sigma factor n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L491_THERP Length = 334 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 110/290 (37%), Positives = 169/290 (58%), Gaps = 9/290 (3%) Query: 320 IAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGE---------A 370 +++ ++ ++ EV Q E E + +R+ GE Sbjct: 35 DLIDQAANDAVYRYFREVGGHRLLTHQEEIEYSRAVRAGLAARKRIEAGEDTPELRELVR 94 Query: 371 KARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY 430 K + A+++++ NLRLV+SIAK+Y + L +DLIQEGNIGLM AV++++ GY+FSTY Sbjct: 95 KGQEAREKLIRHNLRLVVSIAKRYRSSELPLIDLIQEGNIGLMTAVERYDPELGYRFSTY 154 Query: 431 ATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMP 490 AT+WIRQAI R++A+ +RTIR+PVHM + I K+ R Q+ Q+ GR T EELAE + + Sbjct: 155 ATFWIRQAIGRAVANLSRTIRVPVHMHDLIAKIRRAEAQIEQQKGRPATNEELAELLGID 214 Query: 491 EDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAG 550 +I + S++ PIG+D +S +GD + D + ++ A T ++R L Sbjct: 215 VARIEQARTQIPRTSSLDKPIGEDGESSIGDLLPDPRSDDVVEEALTNAIREQIRRSLEQ 274 Query: 551 LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 600 LT RE VL MRFG+D TL E+ ++RER+RQ+E +AL+KLR+ Sbjct: 275 LTERERTVLVMRFGLDGEQPRTLAEIADALKISRERVRQVEKEALQKLRN 324 >UniRef50_Q8S9C9 RNA polymerase sigma factor n=1 Tax=Cyanophora paradoxa RepID=Q8S9C9_CYAPA Length = 431 Score = 261 bits (668), Expect = 5e-68, Method: Composition-based stats. Identities = 121/312 (38%), Positives = 175/312 (56%), Gaps = 15/312 (4%) Query: 316 FNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKD-------INRRMSIG 368 + +L E + + + ++ +TG+ + + Sbjct: 121 IGEISLLKAEDEIELAKRIETFRKLEKVKEHMKWKTGVEPTDEEWARAAALSDAEELRHM 180 Query: 369 EAKARRAKKEMVEANLRLVISIAKKYTN-RG-LQFLDLIQEGNIGLMKAVDKFEYRRGYK 426 A+ +V ANLR V+++AKKY RG + DLIQEGNIGL++AV+KF+ R GY+ Sbjct: 181 VRVGTLARDRLVRANLRWVVAVAKKYHKQRGTMSMQDLIQEGNIGLIRAVEKFDPRMGYR 240 Query: 427 FSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAER 486 F+TYATWWIRQAITRSI + +R IR+P H E IN++ R + + + +GR+PT E+AE Sbjct: 241 FTTYATWWIRQAITRSIQNSSREIRLPAHRHEKINRIKRATVALSRSLGRQPTEAEIAEH 300 Query: 487 MLMPEDKIRKVLKIAK--EPISMETPI--GDDEDSHLGDFIEDTTLELPLDSATTESLRA 542 + + ++RK ++ A +S++ PI D++ + +GDFI E P D A E +R Sbjct: 301 VGLDPSRMRKFVESAAAVATVSLDVPINESDNQSATIGDFIRSEN-EGPADRAERELMRE 359 Query: 543 ATHDVLAG-LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHP 601 + LA L+ RE VLRMRFG+D TL +VG+ VTRER+RQIE KALRKLR P Sbjct: 360 SVARTLAKALSEREYMVLRMRFGLDDGEPKTLNQVGETLGVTRERVRQIEMKALRKLRRP 419 Query: 602 SRSEVLRSFLDD 613 S LR D Sbjct: 420 GFSSALRDLSSD 431 Score = 43.8 bits (102), Expect = 0.021, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 29/52 (55%) Query: 74 EDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIED 125 E+ A A + + G + D R Y++E+G + LL E EI++AKRIE Sbjct: 90 EEVAAPVAPPRAPRVARKGLSEDSGRRYLQEIGEISLLKAEDEIELAKRIET 141 >UniRef50_Q60012 RNA polymerase principal sigma factor hrdD n=27 Tax=Actinomycetales RepID=HRDD_STRVF Length = 332 Score = 261 bits (668), Expect = 5e-68, Method: Composition-based stats. Identities = 117/291 (40%), Positives = 182/291 (62%), Gaps = 7/291 (2%) Query: 315 WFNAAIAMNKPWSEKLHDVSEEVHRAL--QKLQQIEEETGLTIEQVKDINRRMSIGEAKA 372 + + + K ++S+ + + Q++ EEE+ T +++ + GE Sbjct: 39 YLDEIARTPLLDAAKEVELSQTIEAGVFAQQVLDGEEESR-TDATREELQALVDAGER-- 95 Query: 373 RRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT 432 AK + +NLRLV+++A++Y GL LDLIQEGN GL++AV+KF+YR+G+KFSTYAT Sbjct: 96 --AKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYAT 153 Query: 433 WWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPED 492 WWIRQAITRSIADQ+RTIR+PVH++E + ++ R+ R+ +E GR+P P E+A + + Sbjct: 154 WWIRQAITRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGRDPEPAEVAAELGSTPE 213 Query: 493 KIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLT 552 ++ VL A++P+S+ + D ++ GD +EDT+ P S T D++ L Sbjct: 214 RVIDVLDWARDPVSLNMAVDDAGETQFGDLLEDTSAVSPEQSVLTLLRSEELDDLIGRLD 273 Query: 553 AREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 603 R A +++MR+GID + TL EVGK+ +TRERIRQIE AL +L+ +R Sbjct: 274 QRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELKKLAR 324 >UniRef50_P78022 RNA polymerase sigma factor rpoD n=2 Tax=Mycoplasma RepID=RPOD_MYCPN Length = 499 Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats. Identities = 143/425 (33%), Positives = 227/425 (53%), Gaps = 20/425 (4%) Query: 198 EEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFK 257 +E+ + D P+ A K + + ++K+ + + I L EV++ Sbjct: 68 QENKESDVPKKRRGRKPKHAPLKEKNNLKLFDILEGSLKSHT-ENDDTNKVISLLVEVWE 126 Query: 258 QFR-------LVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNE 310 + L K +++ + D + + +E +++ I F N+ Sbjct: 127 KKNKKKDNNSLSNKDIVNVLSKFELPDDEIIFVLDELRDKGIELPHDVEEH-IHEFRANQ 185 Query: 311 TSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEA 370 + V + V L L + L E + I + ++ + Sbjct: 186 DLSIIDEDIEELTTKNISNRDKVDDNVRFFLGSLDSSKM---LDFESEQRIAKVLNSTDE 242 Query: 371 KAR-RAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFST 429 ++R A ++V +NLRLV+SIAKK+ RGL F DLIQEGN+GL+KA+ KF + G KFST Sbjct: 243 ESRKYAINQLVTSNLRLVVSIAKKHLERGLDFNDLIQEGNLGLLKAISKFNWSLGNKFST 302 Query: 430 YATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERM-- 487 YATWWI+QAITR+IADQART+RIPVHM+ETIN+L + R + QE+GREPT EELAE+M Sbjct: 303 YATWWIKQAITRAIADQARTVRIPVHMVETINRLAKAERALNQELGREPTAEELAEKMGG 362 Query: 488 ---LMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAAT 544 KI ++ +++ +P+S++ +G DE+S GDF+ DT ++P + + S Sbjct: 363 QAEGFTVKKIAEIKRLSLDPVSLDKTVGHDEESQFGDFVRDTDAQMPDEFTESRSNYEKI 422 Query: 545 HDVLAG-LTAREAKVLRMRFGI-DMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 602 ++L L+ +E ++RMR G+ N TL+EV ++ + RE+IRQIE KA+RKLR Sbjct: 423 DELLNNCLSEQEELIVRMRIGMPPYNETKTLDEVSQKIKIPREKIRQIETKAIRKLRQAV 482 Query: 603 RSEVL 607 R+ + Sbjct: 483 RNNHM 487 >UniRef50_A5UVI3 RNA polymerase sigma factor n=1 Tax=Roseiflexus sp. RS-1 RepID=A5UVI3_ROSS1 Length = 398 Score = 261 bits (667), Expect = 7e-68, Method: Composition-based stats. Identities = 103/269 (38%), Positives = 158/269 (58%), Gaps = 6/269 (2%) Query: 345 QQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYT--NRGLQFL 402 + E ++GL+ Q RR+ E A ++ NLRLV IA +Y R L F Sbjct: 132 AKRELQSGLSSVQQYAAERRIKASEE----AIDTLMRCNLRLVAKIATRYMPYARHLTFD 187 Query: 403 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 462 DL+QEG IGL+KA+++F+ + STYA +WIRQ+I R++ADQ R +R+PVH++E +++ Sbjct: 188 DLLQEGRIGLLKAIERFDQNCRGRLSTYAVYWIRQSIQRALADQDRMVRLPVHIVEQLHR 247 Query: 463 LNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDF 522 L + Q GREP ELA + + K+R + ++A+ S++ P+G D ++ LG+ Sbjct: 248 LRKTCEQFRCIHGREPGDAELANALGVSLAKVRSLWRVAQHHTSIDRPVGADTNTFLGEL 307 Query: 523 IEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDV 582 I D E P + L A +VL L++RE +L R+G+ +TLEE+G+ F + Sbjct: 308 IADDREEGPDFICEQQLLHAVLREVLGHLSSRERDILERRYGLIDGQTHTLEEIGQIFGL 367 Query: 583 TRERIRQIEAKALRKLRHPSRSEVLRSFL 611 TRERIRQIE KAL++L +L+ FL Sbjct: 368 TRERIRQIERKALKRLNRGEYRRILQPFL 396 >UniRef50_B3PMH4 RNA polymerase sigma-70 factor n=1 Tax=Mycoplasma arthritidis 158L3-1 RepID=B3PMH4_MYCA5 Length = 513 Score = 261 bits (666), Expect = 8e-68, Method: Composition-based stats. Identities = 140/483 (28%), Positives = 246/483 (50%), Gaps = 47/483 (9%) Query: 147 QYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSA 206 ++++ + SD+ G D E D + + + D +DE +D Sbjct: 57 LFEKLLEQGVLSSDIDFGDDDEINETDFFESLANDKKSKKTKKTKTDALDDELHEEDIED 116 Query: 207 DDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQF 266 + D E + +L + + D + + + ++ + + + +L Sbjct: 117 LEPTLEDLEEDEDFKEDLDDEKDLEEDIDENEEFGIESEADDSSPQYDNYTE-KLSDDFD 175 Query: 267 DYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSD------TWFNAAI 320 + ++ T E + +E + +++ + ET+D W Sbjct: 176 EDEDIEAENLLKEYDTYE-----IKLEDQHISREDNMLSNKLTETNDIVKWYMRWIGKYG 230 Query: 321 AMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMV 380 + P + E E + +E+ N A+ +V Sbjct: 231 KLLTP--------------------KKERELAIKMEEALANNNYYRYKRARDM-----LV 265 Query: 381 EANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAIT 440 + NLRLVI+ AK+Y NRGL F+DLI EGN G+MKAV K++Y++G+KFSTYATWWIRQAIT Sbjct: 266 KRNLRLVINNAKRYKNRGLSFIDLISEGNSGIMKAVSKYDYKKGFKFSTYATWWIRQAIT 325 Query: 441 RSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERML--MPEDKIRKVL 498 R++ADQARTIR+PVHM+ETINK+ +I R++ QE G PT EE+A++ +K+R + Sbjct: 326 RAVADQARTIRVPVHMVETINKILKIERELQQEFGYPPTDEEIAKKFGGDFTAEKVRYIR 385 Query: 499 KIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVL-AGLTAREAK 557 KI +PIS++ IG +E+S DF++D ++ P D A+ + L ++++ + L + Sbjct: 386 KINIDPISLDKNIGKEENSSFSDFVKDESVISPNDFASQQELAVILNEMINSSLDPEDQA 445 Query: 558 VLRMRFGIDM------NTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRS-F 610 ++R R+G+ +TL+E+ K+ ++++E++R++EAK LRKL+HP + + L+ + Sbjct: 446 LIRKRYGVGQDPSGVPYRPHTLDELAKELNISKEKVRKLEAKILRKLKHPQKRKKLKEFY 505 Query: 611 LDD 613 L+D Sbjct: 506 LND 508 >UniRef50_Q9KI19 RNA polymerase sigma factor rpoS n=6 Tax=Coxiella burnetii RepID=RPOS_COXBU Length = 352 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 111/283 (39%), Positives = 170/283 (60%), Gaps = 5/283 (1%) Query: 318 AAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKK 377 ++ S + L+++ + L ++ I RR+ G+ K A+K Sbjct: 61 ELANAKAKTKKRRETRSSD--PTQIYLRELGFQPLLNAKEELKIARRVHKGDPK---ARK 115 Query: 378 EMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ 437 +M+EANLRLV+ IA+ Y NRGL FLDLI+EGN+GL+ AV+KF+ RG++FSTYATWWIRQ Sbjct: 116 QMIEANLRLVVKIARHYVNRGLPFLDLIEEGNLGLLTAVEKFDPERGFRFSTYATWWIRQ 175 Query: 438 AITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKV 497 I R+I +Q+RT+R+P+H+I+ +N R ++++ QE+ E TPE++A + P +IR++ Sbjct: 176 TIERAIMNQSRTVRLPIHVIKELNVYLRTAKKLTQEVDHEATPEDVAHLIDKPVQEIRRI 235 Query: 498 LKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAK 557 + +A S++ PI +D L D + D P L+ LA L R + Sbjct: 236 MDLAPSATSIDVPISEDGQKSLVDTLADDNNIDPARLIQNVDLQDHIERWLAQLDERHRE 295 Query: 558 VLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 600 V+ +RFG+ N TLE VGK +TRER+RQI+ AL++LRH Sbjct: 296 VVILRFGLHENEKGTLEAVGKAVGLTRERVRQIQIDALQQLRH 338 Score = 46.1 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%) Query: 76 AAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVA 135 AE A + + R++DP ++Y+RE+G LL + E+ IA+R+ G + + + Sbjct: 59 DAELANAKAKTKKRRETRSSDPTQIYLRELGFQPLLNAKEELKIARRVHKGDPKARKQMI 118 Query: 136 EY 137 E Sbjct: 119 EA 120 >UniRef50_B3QZV6 RNA polymerase sigma factor n=1 Tax=Candidatus Phytoplasma mali AT RepID=B3QZV6_PHYMT Length = 419 Score = 260 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 126/286 (44%), Positives = 183/286 (63%), Gaps = 1/286 (0%) Query: 328 EKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLV 387 E+ + V+ + ++E IE + ++ + +AK +VEAN RLV Sbjct: 129 EEEQEQFRLVYDGREAEAKLESYRKKEIELSEKEISELNDILKISNKAKHRLVEANYRLV 188 Query: 388 ISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA 447 +SIAK+Y RGL+FLDLIQEGN GLM+A++KF +G K STYAT+WI Q I R++ADQA Sbjct: 189 VSIAKRYIRRGLEFLDLIQEGNRGLMRAIEKFNIDKGCKLSTYATFWIVQKILRAVADQA 248 Query: 448 RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISM 507 R IR+PVH+++ IN ++ ++ ++ REPT EEL+E + + E K+R + I K+PIS+ Sbjct: 249 RIIRLPVHIVDRINIISMAKSKLRLKLHREPTIEELSEFINISEKKLRIIEIIKKKPISL 308 Query: 508 ETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLA-GLTAREAKVLRMRFGID 566 E +G+ +DS LG+FI D P D E ++ +++L LT RE K+LRMR+G+ Sbjct: 309 EARVGEKDDSSLGEFISDPDSLSPHDYMLQEIMKNTLNEILEDTLTDREEKILRMRYGLS 368 Query: 567 MNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 +TLEEVG F VTRERIRQIEAKA R+LR P+R L++ + Sbjct: 369 NGKVHTLEEVGNVFGVTRERIRQIEAKAFRRLRTPARQNKLKTLYN 414 Score = 42.3 bits (98), Expect = 0.058, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 1/89 (1%) Query: 42 EDIIQMINDMGIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIG-RTTDPVRM 100 ED I+ ++D +++ E D + ++ E + L+ ++ I + DPV++ Sbjct: 56 EDKIKDLSDSLDEIILEEEDLVYEDETDTLVLDEFEEKKEEFLNIDKNPIDLKFYDPVKI 115 Query: 101 YMREMGTVELLTREGEIDIAKRIEDGINQ 129 Y++E+G + LLT E E + + + DG Sbjct: 116 YLKEIGQIPLLTLEEEQEQFRLVYDGREA 144 >UniRef50_Q7XXT0 Plastid sigma factor 2A n=13 Tax=Poaceae RepID=Q7XXT0_ORYSJ Length = 564 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 87/240 (36%), Positives = 144/240 (60%), Gaps = 1/240 (0%) Query: 372 ARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYA 431 K MV +N+RLVISIA+++ G++ DLIQEG GL++ +KF+ +G++FSTY+ Sbjct: 320 GIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQEGMQGLIRGAEKFDASKGFRFSTYS 379 Query: 432 TWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPE 491 WWI+QA+ +S+++Q++ R+P HM+E ++ +++ +++ R PT EE+A MP Sbjct: 380 HWWIKQAMRKSVSEQSQIFRLPAHMVEASYRVKECIKRLRRKLKRRPTNEEIAADTGMPI 439 Query: 492 DKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGL 551 ++ + + K +S+++ IG D + D T E + S++ H L L Sbjct: 440 KRVEAAVNLPKYSVSLDSKIGST-DMTYQEVTADPTAETAEEMLNRLSMKRDVHKALDTL 498 Query: 552 TAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 T RE +V+ +RFG++ TL+E+G V+RERIRQIE+ A RKLR R L+ +L Sbjct: 499 TTRERQVVTLRFGLEDGRIRTLQEIGNTMGVSRERIRQIESAAFRKLRSKKRVNALKDYL 558 >UniRef50_D0LRC2 RNA polymerase sigma factor n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LRC2_HALO1 Length = 436 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 109/240 (45%), Positives = 161/240 (67%), Gaps = 3/240 (1%) Query: 370 AKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFST 429 A+ R + E V ANLRLV+++A++Y G+ DLIQEGN+GLM AV +F+YRRG +FST Sbjct: 197 ARGARLRNEFVHANLRLVVTMARRYDRGGMPLADLIQEGNLGLMHAVSRFDYRRGLRFST 256 Query: 430 YATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLM 489 YA WWIR AI R++AD++R +RIPVHM+E +L ++ +++ E+GREPTP ELA+ + Sbjct: 257 YACWWIRHAIGRALADKSRAVRIPVHMLEAQQQLAKVQAKLIGELGREPTPSELAKAAQV 316 Query: 490 PEDKIRKVLK-IAKEPISMETPIGDDEDSHLGDFIEDTTLE--LPLDSATTESLRAATHD 546 P K+ ++ + + +P+S++ P+ DD+D GD + D E P+D TT++L + Sbjct: 317 PLAKLNQMHRYLMGQPMSLDRPLYDDDDRAFGDMLADPLSEDSSPVDDLTTQTLTSRVET 376 Query: 547 VLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEV 606 +L LT EA VLR RFG+ + + T E+G Q+D++RERIRQI+ AL KLR V Sbjct: 377 LLDHLTPIEADVLRQRFGLMDDEERTFREIGDQYDLSRERIRQIQNAALGKLRRALERAV 436 >UniRef50_B1K0Z2 RNA polymerase sigma factor n=2 Tax=Burkholderiales RepID=B1K0Z2_BURCC Length = 857 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 103/247 (41%), Positives = 151/247 (61%), Gaps = 4/247 (1%) Query: 362 NRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY 421 + + + A++ M ANL+LV +AKKY G DL QEGNIGL+KAV++F++ Sbjct: 502 ASQYANAMKAYQLARERMAVANLKLVFHLAKKYRYSGEPLDDLAQEGNIGLLKAVERFDW 561 Query: 422 RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPE 481 RRG+KFSTYATWWIRQ I R +AD+ RT+R+PVH+ E +L+R ++ + E GR P Sbjct: 562 RRGFKFSTYATWWIRQQIGRHLADKCRTVRVPVHVHEKAQRLSRETQALESETGRAPELH 621 Query: 482 ELAERMLMPEDKIRKVLKIAKEPISM-ETPIGDDEDSHLGDFIEDTTLELPLDSATTESL 540 E+A R+ M K+ ++ ++A EP+ + E PI ++ + D P+D + L Sbjct: 622 EIAARLNMAVQKVAELQRLAPEPLPIHELPI---DELIAVEVRSDFVSPDPMDIVSKSEL 678 Query: 541 RAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 600 +L+ L +E + LR+RFGI + TLEE+G Q+ VTRER+RQIE ALR L+H Sbjct: 679 LETIDKLLSTLKPKEEQTLRLRFGIGVEEALTLEEIGCQYGVTRERVRQIEVAALRNLKH 738 Query: 601 PSRSEVL 607 P R + Sbjct: 739 PRRMDAF 745 Score = 80.4 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 41/243 (16%), Positives = 89/243 (36%), Gaps = 24/243 (9%) Query: 37 DSDQIEDIIQMINDMGIQVMEE--------APDADDLMLAENTADEDAAEAAAQVLSSVE 88 + D + +IND+G +V E + + + E + DE+ E A L+S++ Sbjct: 266 NPDVEAQLSMIINDLGAEVDERFEYASVSATENFEVYVKPEESPDEE--EIVANALTSID 323 Query: 89 SEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQY 148 S T+P+ +Y +E L++ + E+ +++ +E + + ++A +P I L Sbjct: 324 SLASNRTEPLYIYQKEFQRKRLISADEEVALSRAMESELERALDALAAWPRGIDLTLAAG 383 Query: 149 DRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADD 208 V + L+ L G D +E + + + + + + D + + Sbjct: 384 HVVRTGQQPLAWLSLGPADTQSELEPTSEGENDAGAATSDPTGETAEHDSDLQFEICPRG 443 Query: 209 DNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDY 268 D + D ++ D + A + E RL + Sbjct: 444 DQASD--------------FMDALDRLAGLPVGSAQQGAGWQAIRETLSALRLNRRFLLE 489 Query: 269 LVN 271 L + Sbjct: 490 LAD 492 >UniRef50_Q6KI01 RNA polymerase sigma factor n=1 Tax=Mycoplasma mobile RepID=Q6KI01_MYCMO Length = 488 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 113/253 (44%), Positives = 174/253 (68%), Gaps = 9/253 (3%) Query: 370 AKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFST 429 K ++A ++ NLRLVI+ AKKY NRGL F+DLI EGN GL+KA K++YRRG+KFST Sbjct: 234 RKGKKAFNALIHHNLRLVINNAKKYKNRGLSFIDLISEGNAGLIKAATKYDYRRGFKFST 293 Query: 430 YATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERML- 488 YATWW+RQAITR++ADQAR +R+PVHM+ETINK+ +I R++ QE+G PT +++AE+ Sbjct: 294 YATWWVRQAITRAVADQARIVRVPVHMVETINKIIKIERELHQELGVPPTDKQIAEKYGN 353 Query: 489 -MPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDV 547 +K++ + KI +PIS++ IG D+DS DF++D ++ PL+ A+ L D+ Sbjct: 354 NFTAEKVQYIRKINIDPISLDKSIGKDDDSSFSDFVKDESVVSPLEFASQNELSGILTDI 413 Query: 548 LA-GLTAREAKVLRMRFGIDMNTD------YTLEEVGKQFDVTRERIRQIEAKALRKLRH 600 L L E +++ RFGI ++ D ++LEE+ + +++E++R +E+K LRKL+H Sbjct: 414 LEKHLDEAERDLIKKRFGIGVDKDGNRISSHSLEELAAELQISKEKVRSLESKILRKLKH 473 Query: 601 PSRSEVLRSFLDD 613 P + + L+ F + Sbjct: 474 PQKRKKLKEFYKN 486 >UniRef50_A9ALE2 RNA polymerase sigma factor n=19 Tax=Burkholderia RepID=A9ALE2_BURM1 Length = 525 Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats. Identities = 110/227 (48%), Positives = 153/227 (67%), Gaps = 1/227 (0%) Query: 366 SIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGY 425 + G+ K R A + M+EANLRLV+SIA+KY NRG+ DL+Q+G IGLM+A++KFEYRRG+ Sbjct: 279 NDGQQKVRDATRAMLEANLRLVLSIARKYLNRGVDLSDLVQDGCIGLMRAIEKFEYRRGF 338 Query: 426 KFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAE 485 KFSTYATWWIRQAI R++AD+ARTIR+PVH+ + ++ R + + Q GR+PTP ELA Sbjct: 339 KFSTYATWWIRQAIARAVADRARTIRVPVHVGDQHQRVRRQALRFRQRTGRQPTPAELAA 398 Query: 486 RMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATH 545 + EDK+R +L + EP+S++TP+ D D+ L D IED T P + +R Sbjct: 399 ETGLAEDKLRAILALPAEPVSLDTPL-PDADTGLVDLIEDETSASPFEQLAGTRMRECVR 457 Query: 546 DVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEA 592 +L +T EA VLR RFG+ T + + K ++RER+RQIE Sbjct: 458 SLLRSVTPTEADVLRRRFGLGGTEPDTYDAIAKDAGMSRERVRQIEK 504 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 66/266 (24%), Positives = 102/266 (38%), Gaps = 40/266 (15%) Query: 3 QNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDA 62 P + L+ EQGYLT+A++ D LP + D ++ + + D+GI V++E Sbjct: 11 DTPLDPIIQLLALASEQGYLTHADLVDALPPESDSPDALDVVRAALADIGITVLDEPAAP 70 Query: 63 DDLMLAEN-TADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAK 121 A D D E +L + +TDP+ +YMR M V LLTRE EI +A+ Sbjct: 71 PPFAAAPAVDVDRDTLEEGRALLGDLARGASASTDPLALYMRRMHAVPLLTREDEIALAR 130 Query: 122 RIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHV 181 +E G +Q+ ++A P A+ LL + A A Sbjct: 131 ELETGRHQMLHALAGCPPAVDALLARIGTTTAASA------------------------- 165 Query: 182 GSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRS 241 D DGD D ADD N A +F +R R + A G Sbjct: 166 --------------SDRSDGDADDADDTNDSADAPAAARFDAVRDALADVRRALHAHGCR 211 Query: 242 HATAQEEILKLSEVFKQFRLVPKQFD 267 + ++ +L+ + D Sbjct: 212 SSAYRDARDRLAAELGALTWIASAVD 237 >UniRef50_Q8LK21 Chloroplast RNA polymerase sigma factor, c n=4 Tax=Chlamydomonas reinhardtii RepID=Q8LK21_CHLRE Length = 752 Score = 258 bits (659), Expect = 6e-67, Method: Composition-based stats. Identities = 106/302 (35%), Positives = 176/302 (58%), Gaps = 10/302 (3%) Query: 301 NFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKD 360 NF+ T D + L V + + L + EE V+ Sbjct: 420 NFLGKVESLSTLDVEKEREVTAVCRDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVES 479 Query: 361 INRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE 420 + R G +AK+ ++++N +LV+++ K + +G DL+ EG GL+K V+K++ Sbjct: 480 LKLRYDAG----LKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYD 535 Query: 421 YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTP 480 +G++F TYA WWIRQA++RS+A+ R +R+P+HMIE + +L +S ++ ++ REPT Sbjct: 536 ATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSAKLQTQLAREPTL 595 Query: 481 EELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSAT---T 537 ELA+ +P +++ +++ A+ S++TPIG +E LG ++D+ + + + Sbjct: 596 PELAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGS 652 Query: 538 ESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRK 597 +SLR +L L REA+V+R+RFG+D ++TLEE+G+ +VTRERIRQIEAKALRK Sbjct: 653 DSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRK 712 Query: 598 LR 599 LR Sbjct: 713 LR 714 >UniRef50_A6A8E7 RNA polymerase sigma factor RpoD (Fragment) n=253 Tax=Gammaproteobacteria RepID=A6A8E7_VIBCH Length = 305 Score = 258 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 200/305 (65%), Positives = 243/305 (79%), Gaps = 12/305 (3%) Query: 1 MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP 60 M+QNPQSQLK LV RGKEQGYLTYAEVNDHLP +IVDS+Q+EDIIQMINDMGI+V+E AP Sbjct: 1 MDQNPQSQLKQLVLRGKEQGYLTYAEVNDHLPAEIVDSEQVEDIIQMINDMGIKVVETAP 60 Query: 61 DADDLMLAENTA--DEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID 118 DADDL L+++T DEDAAEAAA LSSVESEIGRTTDPVRMYMREMGTVELLTREGEID Sbjct: 61 DADDLALSDDTTITDEDAAEAAAAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEID 120 Query: 119 IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTA 178 IAKRIEDGINQVQ ++AEYP I Y+LEQ+DRV+AEE RL+DLI+GFVDPN E APTA Sbjct: 121 IAKRIEDGINQVQSAIAEYPGTIPYILEQFDRVQAEELRLTDLISGFVDPNDMETEAPTA 180 Query: 179 THVGSELSQEDL----------DDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQY 228 TH+GSELS+ DL +D++++++ DG+ ++++ IDPELAREKF ELR ++ Sbjct: 181 THIGSELSEADLADEDDAVVEDEDEDEDEDGDGESSDSEEEVGIDPELAREKFNELRGKF 240 Query: 229 VVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIM 288 + + GR A E + ++F++FRL PKQFD+LV ++R MDRVRTQERL+M Sbjct: 241 QNLQLAVNEFGRDSHQASEASDLVLDIFREFRLTPKQFDHLVETLRTSMDRVRTQERLVM 300 Query: 289 KLCVE 293 K VE Sbjct: 301 KAVVE 305 >UniRef50_C1SKA7 RNA polymerase sigma factor n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SKA7_9BACT Length = 301 Score = 258 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 96/288 (33%), Positives = 165/288 (57%), Gaps = 4/288 (1%) Query: 325 PWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANL 384 + K+ L I +T Q I R+ G+ A ++ NL Sbjct: 18 ATTAKVMPAPVSETSLKHYLNSISAYKPMTKAQEFAIGERIQAGDED---ALNTLILCNL 74 Query: 385 RLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIA 444 + V+SIA +Y N GL D+I +GN+GL++A +F++ + KF +YA WWIRQ+I +++A Sbjct: 75 KFVVSIANRYRNTGLPIADIINQGNLGLVEAAKRFDHTKDVKFISYAVWWIRQSIIQALA 134 Query: 445 DQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEP 504 +Q+ T+++P+ + K+N + ++ +++ REPT ELAE++ M E I VL++++ Sbjct: 135 EQSGTVKLPIKQAGILYKINGATEKLNKKLNREPTASELAEQLEMDEADIENVLRVSRNY 194 Query: 505 ISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFG 564 +S+E PI D ED D +E T ++ D + L+ A D++ L RE++++ RFG Sbjct: 195 LSLEAPIKDGEDRSFIDLLESGTKDIEEDIISKT-LKTALDDIVDELDERESQIIEWRFG 253 Query: 565 IDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 ++ TLEE+G+ D++RER+RQ+E +AL KLR + L+ FL+ Sbjct: 254 LNEEAPKTLEEIGELMDISRERVRQLETRALSKLRKKAMKNKLQDFLN 301 >UniRef50_Q9ZSL6 Sigma-like factor n=2 Tax=Arabidopsis thaliana RepID=Q9ZSL6_ARATH Length = 419 Score = 257 bits (657), Expect = 9e-67, Method: Composition-based stats. Identities = 87/275 (31%), Positives = 154/275 (56%), Gaps = 11/275 (4%) Query: 349 EETGLTIEQVKDINRRMSIGEAKARR-----------AKKEMVEANLRLVISIAKKYTNR 397 E G ++E+ + ++ ++ G K +R A++++ RLV+SIA Y + Sbjct: 142 ENLGTSVEENEMVSVLLASGRGKKKRSANEILCRRKEAREKITRCYRRLVVSIATGYQGK 201 Query: 398 GLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMI 457 GL DLIQEG+IGL++ ++F+ RGYK STY WWI+QAI R+IA ++R +++P M Sbjct: 202 GLNLQDLIQEGSIGLLRGAERFDPDRGYKLSTYVYWWIKQAILRAIAHKSRLVKLPGSMW 261 Query: 458 ETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDS 517 E K+ S + +++ R+P+ EE+AE + + +R ++ ++ P+S++ + Sbjct: 262 ELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLNVSAVRLAVERSRSPVSLDRVASQNGRM 321 Query: 518 HLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVG 577 L + + P + E ++ +L LTARE++VL + FG++ T + EE+G Sbjct: 322 TLQEIVRGPDETRPEEMVKREHMKHEIEQLLGSLTARESRVLGLYFGLNGETPMSFEEIG 381 Query: 578 KQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 K ++RER+RQI AL+KLR+ L+ + Sbjct: 382 KSLKLSRERVRQINGIALKKLRNVHNVNDLKIYYS 416 >UniRef50_C1A692 RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A692_GEMAT Length = 295 Score = 257 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 98/295 (33%), Positives = 159/295 (53%), Gaps = 3/295 (1%) Query: 316 FNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRA 375 + + E Q L ++ L + ++ +++ G+ A Sbjct: 2 TEVKRKRRRAAPAGIAPSEPERDILDQYLYEVSTYPLLKAAEEIELAKKIRAGDQD---A 58 Query: 376 KKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 435 +E+V+ NLR VIS+AKKY NRGL +DLI EGN+GL+ A KF+ +G KF +YA WWI Sbjct: 59 LQELVKRNLRFVISVAKKYQNRGLPLIDLIGEGNVGLLTAARKFDPDQGVKFISYAVWWI 118 Query: 436 RQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIR 495 RQAI S+A Q RT+R+P++ ++++ + S + Q++ REP+PEELA+ + D ++ Sbjct: 119 RQAILSSLARQGRTVRVPLNRTADLSRIIKASEILRQKLRREPSPEELAQVTGLSVDVVQ 178 Query: 496 KVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTARE 555 + + + ++ P+ D D L + + + A L L+ L R+ Sbjct: 179 SLAALNTGDVRLDAPMDPDGDRSLIERFVADEMPDTEEEAMNRFLTDEIEQALSTLPPRD 238 Query: 556 AKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSF 610 AKVLR+ FG++ ++TLEE+G VTRER+RQ+ +AL++LR L SF Sbjct: 239 AKVLRLYFGLEGGREHTLEEIGSMLGVTRERVRQLRDRALKRLREGDVGRALSSF 293 >UniRef50_P35540 RNA polymerase sigma factor rpoS n=502 Tax=Proteobacteria RepID=RPOS_SHIFL Length = 330 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 105/271 (38%), Positives = 173/271 (63%), Gaps = 3/271 (1%) Query: 337 VHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTN 396 + L +I LT E+ RR G+ +++ M+E+NLRLV+ IA++Y N Sbjct: 55 LDATQLYLGEIGYSPLLTAEEEVYFARRALRGD---VASRRRMIESNLRLVVKIARRYGN 111 Query: 397 RGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHM 456 RGL LDLI+EGN+GL++AV+KF+ RG++FSTYATWWIRQ I R+I +Q RTIR+P+H+ Sbjct: 112 RGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHI 171 Query: 457 IETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDED 516 ++ +N R +R++ ++ EP+ EE+AE++ P D + ++L++ + S++TP+G D + Sbjct: 172 VKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSE 231 Query: 517 SHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEV 576 L D + D P D+ + ++ + L L A++ +VL RFG+ TLE+V Sbjct: 232 KALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDV 291 Query: 577 GKQFDVTRERIRQIEAKALRKLRHPSRSEVL 607 G++ +TRER+RQI+ + LR+LR +++ L Sbjct: 292 GREIGLTRERVRQIQVEGLRRLREILQTQGL 322 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 11/117 (9%) Query: 46 QMINDMGIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREM 105 ++ G++V +E ++ + A+E+ A R D ++Y+ E+ Sbjct: 15 AEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQ---------RVLDATQLYLGEI 65 Query: 106 GTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLI 162 G LLT E E+ A+R G + + E + +++ R L DLI Sbjct: 66 GYSPLLTAEEEVYFARRALRGDVASRRRMIES--NLRLVVKIARRYGNRGLALLDLI 120 >UniRef50_Q2S172 RNA polymerase sigma-70 factor n=91 Tax=Bacteroidetes/Chlorobi group RepID=Q2S172_SALRD Length = 313 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 108/278 (38%), Positives = 171/278 (61%), Gaps = 1/278 (0%) Query: 336 EVHRALQKLQQIEEETG-LTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKY 394 +V R + L Q +E G + + + ++ E A ++ ANLR V+S+AKKY Sbjct: 36 QVSREQRMLDQYLQEIGKIDLLEPEEEVELARRIEDGDEEALHKLCRANLRFVVSVAKKY 95 Query: 395 TNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPV 454 +GL DLI EGN GL+KA +F+ RG+KF +YA WWIRQAI +++A+Q+R +R+P+ Sbjct: 96 QGQGLSLADLINEGNYGLIKAAKRFDETRGFKFISYAVWWIRQAILQALAEQSRVVRLPL 155 Query: 455 HMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDD 514 + I TI+K+ + S ++ Q++ R+P EELAE + + K+R+ +K +SM+ P ++ Sbjct: 156 NRIGTISKIRKASARLQQDLDRKPNIEELAEELEIDVQKVREAMKHTSRHLSMDAPFNEE 215 Query: 515 EDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLE 574 +D+ L D + D + P + +ES++ L+ L REA++ R+ FGI TLE Sbjct: 216 DDNSLLDVLPDEDNDSPDEEMLSESVKIDIERALSALHDREAEITRLYFGIGREHPLTLE 275 Query: 575 EVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 E+GK+FD+TRER+RQI+ KALRKLR + L+ D Sbjct: 276 EIGKRFDLTRERVRQIKEKALRKLRQRHSKQDLQPHTD 313 >UniRef50_A4AF82 RNA polymerase sigma factor n=9 Tax=Bacteria RepID=A4AF82_9ACTN Length = 1108 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 116/369 (31%), Positives = 181/369 (49%), Gaps = 20/369 (5%) Query: 262 VPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPK---KNFITLFTGNETSDTWFNA 318 P D ++ S R+ + + E+ ++ ++ + + + T + Sbjct: 555 TPSDIDRVI-SARIKREVAQDAEQAALQAAKDEARDARYAREAARGELTDDGERMQLIPD 613 Query: 319 AIAMNKPWSEKLHDVSEE---VHRALQKLQQIEEETGLTIEQVKDINRR----------M 365 + + L + + + L E E GL ++ D+ R + Sbjct: 614 VLGASDDLVLDLRQRLNDFPLLSADQEVLLAREIEAGLFAQEQFDLLDRREQRSPSGREL 673 Query: 366 SIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGY 425 +A +N RLV SIA++Y N GL + DLIQEG +GL++A+ KF+Y +G+ Sbjct: 674 QWVAKNGEKAFARFAASNYRLVFSIARRYVNNGLDYADLIQEGALGLLRAIQKFDYMKGF 733 Query: 426 KFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAE 485 KFSTYATWW+RQAITR++AD TIRIPVHM+E NKL + +R + R+PT ELA Sbjct: 734 KFSTYATWWVRQAITRALADLGSTIRIPVHMVEQQNKLRQAARSFELQNDRKPTISELAA 793 Query: 486 RMLMPEDKIRKVLKIAKEPISMETPIGDDED-SHLGDFIEDTTLELPLDSATTESLRAAT 544 + E + L +S++ + E L + + D ++ P+D R A Sbjct: 794 GAEVTEQDASRALGYEYSFLSIDKELDPGEGFGSLHNLLVDESV-APVDLLIHAEFRGAM 852 Query: 545 HDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRS 604 ++VL+ L RE+ ++MRFGI TL+ +G F VTRERIRQIE K + LR + Sbjct: 853 NNVLSALPKRESTTIQMRFGIGGQDPATLDHIGDIFGVTRERIRQIEKKTMESLRSSAEV 912 Query: 605 E-VLRSFLD 612 + L FLD Sbjct: 913 QGRLGDFLD 921 >UniRef50_B1WQH6 RNA polymerase sigma factor n=5 Tax=Chroococcales RepID=B1WQH6_CYAA5 Length = 297 Score = 256 bits (653), Expect = 3e-66, Method: Composition-based stats. Identities = 107/262 (40%), Positives = 168/262 (64%), Gaps = 2/262 (0%) Query: 348 EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 407 E + L + + + +++ AK +RA+ +M++ANLRLV+SIAKKY N GL LDLIQE Sbjct: 34 EIQAMLPLLEKEALSKEEEKIVAKGQRARDKMIQANLRLVVSIAKKYLNSGLSLLDLIQE 93 Query: 408 GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 467 G++GL++ V+KF+ RGYKFSTYA WWIRQ ITR+IA+Q+RTIR+P+H+ E +NK + Sbjct: 94 GSLGLIRGVEKFDPSRGYKFSTYAYWWIRQGITRAIAEQSRTIRLPIHINENLNKYRKSI 153 Query: 468 RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDED-SHLGDFIEDT 526 R++ ++GR+PT +E+AE M + DK+R + + A + S I DE+ + LG + D Sbjct: 154 RELTLKLGRKPTQQEIAENMDISVDKLRFLQQAAFKTKSRSLNIVIDENHTELGQLLPDE 213 Query: 527 TLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRER 586 P D + + + +L L+ R+ +V+ +RFG+ + + +G+Q ++ ER Sbjct: 214 DSVSPSDFVKQQEKISQINRMLENLSPRQKEVIILRFGLRDGKQLSYKAIGEQCGISHER 273 Query: 587 IRQIEAKALRKLR-HPSRSEVL 607 RQI ++ALR LR S+ E L Sbjct: 274 ARQIYSRALRILRKQSSKIERL 295 >UniRef50_D1A523 RNA polymerase sigma factor n=3 Tax=Actinomycetales RepID=D1A523_THECD Length = 360 Score = 255 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 110/292 (37%), Positives = 179/292 (61%), Gaps = 10/292 (3%) Query: 314 TWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEE---TGLTIEQVKDINRRMSIGEA 370 + + + +++ D+++ + L +EE+ G+T ++++++ A Sbjct: 21 AYLDRIGRTHLLDAQEEVDLAKAIEGGLYAEHLLEEDRVPPGVTRQELEELV-------A 73 Query: 371 KARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY 430 RAK+ VEANLRLV+SIA+KY L +DLIQEGN+GLM+AV+KF+YRRG+KFSTY Sbjct: 74 AGVRAKQRFVEANLRLVVSIARKYPTDALPLIDLIQEGNLGLMRAVEKFDYRRGFKFSTY 133 Query: 431 ATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMP 490 ATWWIRQ+I R ++ ARTIR+PVH+ E +++L R RQ+ +E+GREPT EELAE + Sbjct: 134 ATWWIRQSIGRGLSHTARTIRLPVHVEEELSRLRRAERQLGRELGREPTREELAEALGAA 193 Query: 491 EDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAG 550 D + ++L+ ++P S++ + D ++ +GD +ED P A +L Sbjct: 194 VDHVDELLRWRRDPASLDAAVDDAGETPMGDLLEDPEGVSPEAEVLALDDIAGLARLLDR 253 Query: 551 LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 602 L RE+ +LR RFGI+ + ++G ++ ++ R+RQI ++LR+LR + Sbjct: 254 LPERESAILRARFGIEDGQPLSYAQIGARYGLSHNRVRQITDRSLRRLRQLA 305 >UniRef50_A6CZ07 RNA polymerase sigma factor n=1 Tax=Vibrio shilonii AK1 RepID=A6CZ07_9VIBR Length = 296 Score = 254 bits (648), Expect = 9e-66, Method: Composition-based stats. Identities = 102/263 (38%), Positives = 160/263 (60%), Gaps = 2/263 (0%) Query: 347 IEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQ 406 +E G + +D A A++ ++ +NLRLVI AK+Y+NRGL F DLI Sbjct: 28 FKEVAGHDLLSAEDERHIARKARAGDTLARQHLINSNLRLVIRTAKRYSNRGLDFYDLIN 87 Query: 407 EGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRI 466 EGNIGL++AVDKF+ GY+FSTYA WWI+QAI R+I +Q RTIR+PVH+ + I + ++ Sbjct: 88 EGNIGLIQAVDKFDPELGYRFSTYAVWWIQQAIDRAIMNQGRTIRVPVHVTKQIRECSKA 147 Query: 467 SRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDED--SHLGDFIE 524 + ++ +E EPT E+AER +++ K+LK++++ +S++ ++ D HL + Sbjct: 148 AHELRKEGNHEPTSSEIAERTGRAPEEVSKLLKLSEQSLSLDNGWDEEGDKKDHLQTIDD 207 Query: 525 DTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTR 584 D ELP T++L A D++ L ++ +L RFG+ + TLE+VG+ VTR Sbjct: 208 DDVFELPEQDIVTQNLNKALIDLVDSLPDKQRVILHHRFGLLDDDPKTLEQVGEIVGVTR 267 Query: 585 ERIRQIEAKALRKLRHPSRSEVL 607 ER+RQI+ A+ LR + + L Sbjct: 268 ERVRQIQKSAMETLRDKLKRQNL 290 >UniRef50_D1HUY6 Whole genome shotgun sequence of line PN40024, scaffold_64.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D1HUY6_VITVI Length = 319 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 89/277 (32%), Positives = 150/277 (54%) Query: 335 EEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKY 394 E R + + ++ E + E V + R +++ + ++ RLV+SIA +Y Sbjct: 42 EAARRRIAETREHEPTSNQWAEAVGIKRSSLDKMLCNGRESRERINQSYRRLVVSIAARY 101 Query: 395 TNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPV 454 +GL DLIQEG+IGL++ ++F+ RGYK STY WWIRQAI R+IA+++R IR+P Sbjct: 102 QGKGLSLQDLIQEGSIGLLRGAERFDPDRGYKLSTYVYWWIRQAIVRAIANKSRIIRLPG 161 Query: 455 HMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDD 514 + E + K+ + + + R PT +E+AE + + +R V + ++ PIS++ + Sbjct: 162 SICEMVAKIAEARTVLSRRLRRLPTYDEIAEFIDVNVSTVRLVSERSRTPISVDQAVTSQ 221 Query: 515 EDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLE 574 L + I P + ++ L L REA +LR+ FGI+ T + E Sbjct: 222 GCMTLQEIIPGPDETTPQKMVKRQLMKQEVERALNTLCEREAYILRLYFGINGETPLSFE 281 Query: 575 EVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 E+G+ ++RER+RQI + AL KLR S + L+ ++ Sbjct: 282 EIGRLMKLSRERVRQINSIALSKLRQTSVVDYLKLYM 318 >UniRef50_C1DV14 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium azorense Az-Fu1 RepID=C1DV14_SULAA Length = 282 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 94/285 (32%), Positives = 166/285 (58%), Gaps = 5/285 (1%) Query: 330 LHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVIS 389 + + +E+ +QQ+ + LT E+ +++ R G+ + A K++VE NLR V++ Sbjct: 1 MANQDQELTTLQLYMQQMGKYPMLTPEEERELAIRAKKGDKE---ALKKLVEGNLRFVVN 57 Query: 390 IAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQART 449 IAK + G+ DLI GN+GL++A +F+ + KF +YA WWIRQAI ++I Q Sbjct: 58 IAKNFMGWGVPLTDLIAAGNLGLIEAAKRFDPDKNVKFISYAVWWIRQAIMQTIFQQTGA 117 Query: 450 IRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMET 509 +RIP+ I+K+ ++ + +GREPT EE+A+ + K++ L I ++PIS++ Sbjct: 118 VRIPIKESLFISKVKNAYEKLKESLGREPTEEEIAKELKTSVKKVKNALAIVRQPISLDM 177 Query: 510 PIGD--DEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDM 567 P+G+ +ED L D + E +L+ +L L RE +++++R+G++ Sbjct: 178 PLGEGGEEDFTLLDILSKKGTEDVEKDLVESTLKEEFERLLNVLDEREREIIKLRYGLEG 237 Query: 568 NTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 TLEEVG+ ++RER+RQ+E +AL+KL+ + + L++FL Sbjct: 238 LEPKTLEEVGEMLGISRERVRQLEQRALKKLKAVALKKHLQNFLS 282 Score = 41.9 bits (97), Expect = 0.080, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 2/67 (2%) Query: 98 VRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEAR 157 +++YM++MG +LT E E ++A R + G + + E + +++ Sbjct: 11 LQLYMQQMGKYPMLTPEEERELAIRAKKGDKEALKKLVE--GNLRFVVNIAKNFMGWGVP 68 Query: 158 LSDLITG 164 L+DLI Sbjct: 69 LTDLIAA 75 >UniRef50_B2VA41 RNA polymerase sigma factor n=2 Tax=Hydrogenothermaceae RepID=B2VA41_SULSY Length = 281 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 100/280 (35%), Positives = 164/280 (58%), Gaps = 5/280 (1%) Query: 335 EEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKY 394 +E+ +QQ+ + L+ E+ K++ R G+ + A K++VE NLR V+SIAK + Sbjct: 5 DELTTLQLYMQQMGKHPMLSPEEEKELAIRAKQGDKE---ALKKLVEGNLRFVVSIAKNF 61 Query: 395 TNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPV 454 G+ DLI GN+GL++A +F+ + KF +YA WWIRQAI ++I Q +RIPV Sbjct: 62 MGWGVPLTDLIAAGNLGLIEAAKRFDPDKNVKFISYAVWWIRQAIMQTIFQQTGAVRIPV 121 Query: 455 HMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGD- 513 I K+ ++ +E+GREPT EE+A+R+ K++ L I + PIS++ P+G+ Sbjct: 122 KESLFIAKVKETYEKLKEELGREPTEEEIAKRLNTSVKKVKNALSIVRLPISLDMPLGEG 181 Query: 514 -DEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYT 572 +ED L D + E E++ +L L RE ++++MR+G+D T Sbjct: 182 GEEDFTLLDVLSKKGTEDIEKELIEETIHKELESMLDVLDEREKEIIKMRYGLDGEEPKT 241 Query: 573 LEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 LEEVG++ ++RER+RQ+E +AL+KL+ + + L+ FL Sbjct: 242 LEEVGEKLGISRERVRQLEQRALKKLKAVALKKHLKDFLS 281 >UniRef50_B4U904 RNA polymerase sigma factor n=5 Tax=Aquificales RepID=B4U904_HYDS0 Length = 311 Score = 252 bits (643), Expect = 3e-65, Method: Composition-based stats. Identities = 95/314 (30%), Positives = 171/314 (54%), Gaps = 37/314 (11%) Query: 331 HDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISI 390 D +E+ Q ++++ LT ++ K+ +R G+ +A +A +VEANLR V+S+ Sbjct: 3 SDSEQEIIN--QYMKRVSSVKLLTPQEEKEFAKRAKAGDKEALKA---LVEANLRFVVSV 57 Query: 391 AKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTI 450 AK+Y G+ +LI GN+GL++A +F+ + KF +YA WW+RQAI ++++ Q + Sbjct: 58 AKQYMGYGIPLSELIAAGNLGLLEAATRFDPDKNVKFISYAVWWVRQAIMQALSQQTGAV 117 Query: 451 RIPVHMIETINKLNRISRQMLQEMGREPTPEELAERML---------------------- 488 RIPV I+ + ++L+E+ REPT +E+A+ + Sbjct: 118 RIPVKHSHLISAVGLAYNELLKELEREPTYKEIADYINKKNIIREFKKETGFAPTEEELE 177 Query: 489 ----------MPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTE 538 + E+ ++K L+I K P+S++TP+GD+ D+ D + + + + + Sbjct: 178 QSMTQEHKYTVTEEDVKKCLQICKTPLSLDTPVGDNPDTLFVDLLSISDTDEIEEGVIKD 237 Query: 539 SLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKL 598 L HD+++ L +E KVL +R+G++ N TL E+G ++RER+RQ+E +A++KL Sbjct: 238 VLEKELHDIISKLPEKERKVLELRYGLNGNEPLTLREIGDALGISRERVRQLETRAIKKL 297 Query: 599 RHPSRSEVLRSFLD 612 R + L+ FL Sbjct: 298 RSFALKRHLKDFLS 311 >UniRef50_Q3JAH2 RNA polymerase sigma factor n=2 Tax=Nitrosococcus oceani RepID=Q3JAH2_NITOC Length = 303 Score = 252 bits (643), Expect = 3e-65, Method: Composition-based stats. Identities = 93/263 (35%), Positives = 160/263 (60%), Gaps = 4/263 (1%) Query: 343 KLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL 402 +++ + L+ E+ + R G+ + A+ ++E+NLR+VI +A ++ NRGL + Sbjct: 42 YMREAGKVPLLSAEEERHYARLAQQGDRE---ARNHIIESNLRIVIRMATRHINRGLPLM 98 Query: 403 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 462 DLI+EGN+GL+ AV+KF G++FSTYA+WWIRQAI R++ +Q RTIR+P+H+ + I Sbjct: 99 DLIEEGNLGLIDAVEKFNPELGFRFSTYASWWIRQAIERALMNQTRTIRVPIHVFKKIRC 158 Query: 463 LNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDF 522 + +R Q EP E+A+ + P ++I++ L + IS++ P+ +D D L D Sbjct: 159 YQKEARYFRQRYNIEPHLGEIAKLLHEPLERIQRYLSLQAPEISLDDPLSEDTDDCLVDL 218 Query: 523 IEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDV 582 + D P +A+ H+ L+ L R+ ++++ R+G+D TLEE+G++ + Sbjct: 219 LPDER-NNPAILWEIFDKKASIHNQLSQLPERQQEIIKCRYGLDGYEVTTLEEIGQKLGI 277 Query: 583 TRERIRQIEAKALRKLRHPSRSE 605 TRER+RQI+ A+++LR SE Sbjct: 278 TRERVRQIQQTAIKRLRKIIESE 300 Score = 43.4 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 100 MYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLS 159 +YMRE G V LL+ E E A+ + G + + + E + ++ R L Sbjct: 41 LYMREAGKVPLLSAEEERHYARLAQQGDREARNHIIES--NLRIVIRMATRHINRGLPLM 98 Query: 160 DLI 162 DLI Sbjct: 99 DLI 101 >UniRef50_D0Z2H8 RNA polymerase sigma factor n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0Z2H8_LISDA Length = 294 Score = 252 bits (643), Expect = 4e-65, Method: Composition-based stats. Identities = 100/268 (37%), Positives = 162/268 (60%), Gaps = 5/268 (1%) Query: 341 LQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQ 400 L+ I + LT ++ +R+ +G+AK+++ M+E+NLRLV+SIAKKY G+Q Sbjct: 19 QLYLKDIALKPLLTKDEEILYSRKALVGDAKSKKV---MIESNLRLVVSIAKKYRGSGMQ 75 Query: 401 FLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI 460 D+I EGNIGL+ AV+KF+ RG++FSTYATWWI+Q I R+I +QARTIR+PVH+ + I Sbjct: 76 LSDMIDEGNIGLITAVEKFDPERGFRFSTYATWWIKQTIERAIHNQARTIRLPVHVSKEI 135 Query: 461 NKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDS--H 518 N + R +Q+++ EPT EE+A+ + + I +L +S + I ++ + Sbjct: 136 NTILRTHKQLMKTNNSEPTHEEVADELDKSVEDISALLSYDAPVMSFDQTISSEDSNSQT 195 Query: 519 LGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGK 578 + FI D + P ++ T +L GL R+ ++L RFG+ TL++V + Sbjct: 196 MASFISDDSDNGPDAQIDKNDIQKLTLTMLEGLNPRDREILCRRFGLMGYEAQTLQQVAE 255 Query: 579 QFDVTRERIRQIEAKALRKLRHPSRSEV 606 + +TRERIRQ++ +L KL++ + E Sbjct: 256 EVGLTRERIRQLQVSSLNKLKNVLQREK 283 Score = 43.4 bits (101), Expect = 0.027, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 36/77 (46%), Gaps = 2/77 (2%) Query: 87 VESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLE 146 V+ D +++Y++++ LLT++ EI +++ G + + + E + ++ Sbjct: 7 VDDTTSFDNDVIQLYLKDIALKPLLTKDEEILYSRKALVGDAKSKKVMIES--NLRLVVS 64 Query: 147 QYDRVEAEEARLSDLIT 163 + +LSD+I Sbjct: 65 IAKKYRGSGMQLSDMID 81 >UniRef50_B7KCK0 RNA polymerase sigma factor n=2 Tax=Cyanothece RepID=B7KCK0_CYAP7 Length = 295 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 96/235 (40%), Positives = 161/235 (68%), Gaps = 4/235 (1%) Query: 370 AKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFST 429 + + AK++M++ANLRLV+SIAK+Y RGL LDLIQEG++GL++AV+KF+ +GYKFST Sbjct: 55 EQGQIAKRKMIQANLRLVVSIAKRYQRRGLSLLDLIQEGSLGLIRAVEKFDPSKGYKFST 114 Query: 430 YATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLM 489 YA WW+RQAITR++A+++RTIR+P+HM E +N+L + R++ E+GR+P +E+A+RM + Sbjct: 115 YAYWWVRQAITRALAEKSRTIRLPIHMTENLNQLKKSVRELTGELGRKPNEQEVAQRMEI 174 Query: 490 PEDKIRKVLKIAKEPI--SMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDV 547 P +K+R++ S+ + DD + LG+ + D T LP++ + L +D+ Sbjct: 175 PVEKLREIRHAVYRTDAKSLNITL-DDNQTELGEVLPDETS-LPIEFVSQWELVTKINDL 232 Query: 548 LAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 602 L L R+ +++ +RFG+ + +E+G+Q ++ ER RQ+ +A+R L+ + Sbjct: 233 LEDLPPRQREIITLRFGLQTGKRMSYKEIGRQCGISHERARQLLNRAMRTLKQKA 287 Score = 41.9 bits (97), Expect = 0.068, Method: Composition-based stats. Identities = 12/30 (40%), Positives = 22/30 (73%) Query: 96 DPVRMYMREMGTVELLTREGEIDIAKRIED 125 DPVR Y++E+G + LL E E+ +A ++++ Sbjct: 7 DPVRSYLQEIGRIPLLNSEEEVQLATKVQN 36 >UniRef50_A6FX97 RNA polymerase sigma factor n=2 Tax=Plesiocystis pacifica SIR-1 RepID=A6FX97_9DELT Length = 421 Score = 251 bits (640), Expect = 7e-65, Method: Composition-based stats. Identities = 102/330 (30%), Positives = 181/330 (54%), Gaps = 10/330 (3%) Query: 288 MKLCVEQCKMPK-KNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQ 346 ++L + + K F + + AA+ ++ +S+ + E + ++ Sbjct: 91 LRLASRAYRDRETKANREAFEHAQQAVAEAMAALDLDGNYSDCVAADLEAIDAHRREGVA 150 Query: 347 IE-EETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLI 405 +E +++ R +K + V+ANLRLV++IA+++ + + DL+ Sbjct: 151 LEVSYPPKGSRPFARYVQKVRSSGHALRWSKNKFVKANLRLVVTIARRFDHGLMPLQDLV 210 Query: 406 QEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNR 465 QEGN+GLMKAVD+F+ RGY+FSTYATWWIR AI R++A++ RT+R+P H+ + +L R Sbjct: 211 QEGNLGLMKAVDRFDPTRGYRFSTYATWWIRHAINRALANKGRTVRLPAHVSADLQRLRR 270 Query: 466 ISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEP-ISMETPIGDDEDSHLGDFIE 524 ++R++ + G PTPE+LA+ + + ++RK+ K+ +P +S++ P DD+ L D +E Sbjct: 271 VTRELEAKTGETPTPEQLAQAAGLSKTRVRKLSKLTLDPTVSLDAPSHDDDARGLLDRLE 330 Query: 525 DTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGID-------MNTDYTLEEVG 577 D ++ + D ++L D L L E +L+ R+GI TL ++G Sbjct: 331 DASVPVAADILEHQALNEHLRDALYNLQPIELDILKRRYGIATSEAESVDFEPMTLRQLG 390 Query: 578 KQFDVTRERIRQIEAKALRKLRHPSRSEVL 607 ++ ++RERIRQ++ +AL KLR L Sbjct: 391 ERHSLSRERIRQLQERALTKLRREFARREL 420 >UniRef50_Q84LK8 Os08g0242800 protein n=5 Tax=Poaceae RepID=Q84LK8_ORYSJ Length = 572 Score = 250 bits (639), Expect = 9e-65, Method: Composition-based stats. Identities = 91/278 (32%), Positives = 144/278 (51%), Gaps = 1/278 (0%) Query: 335 EEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKY 394 EE HR L+ E E V ++ + RR +++M +N RLVI +A+KY Sbjct: 293 EEAHRKLEVQCGREPTLAEWAEAVGMSSKELQSSIRTGRRCREKMARSNFRLVIHVARKY 352 Query: 395 TNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPV 454 GL DL+Q+G GLMK +KF +G +F TYA WWIRQ+I +SI +R IR+P Sbjct: 353 EGYGLDIQDLVQDGCSGLMKTFEKFNPSKGCRFPTYAYWWIRQSIKKSIFKNSRLIRLPE 412 Query: 455 HMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDD 514 + + K+ + + + E G +PT +A R + +K+ K+ ++P SM+ + D Sbjct: 413 SVYALLRKVGKARMECIME-GEQPTNANVARRAGITIEKLAKLRAKTRKPRSMQDHVWSD 471 Query: 515 EDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLE 574 E + ED +E P S +R D L L+ RE +++ RFGI TL Sbjct: 472 EGVTFQEITEDPNVEPPDLSVDRMMMRQQVRDFLGILSPREKEIIEHRFGIHDGEPKTLH 531 Query: 575 EVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 +G F +++ERIRQ++ +AL KL+ + + + D Sbjct: 532 VIGDMFGLSKERIRQLQNRALEKLKRSASLQGFDVYFD 569 >UniRef50_A9GLY8 RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GLY8_SORC5 Length = 446 Score = 250 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 114/246 (46%), Positives = 168/246 (68%), Gaps = 1/246 (0%) Query: 367 IGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYK 426 G +AK E+V+ANLRL ++IA+++ G+ LDL+QEGN+GL++A DKFEYRRG++ Sbjct: 201 RGRRAVAQAKSELVQANLRLAVAIAREHQRFGVPLLDLVQEGNLGLIRAADKFEYRRGHR 260 Query: 427 FSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAER 486 F TYA WWI+QAI R+I +Q + +R+PVH+ +++ R R ++QE GREP+ EE+AER Sbjct: 261 FGTYAAWWIKQAIKRTILNQGKPVRMPVHLTAIRSQVVRARRDLVQERGREPSVEEIAER 320 Query: 487 MLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHD 546 + +K+R + ++A EP+S++ P+G++ D+ GD + + P D L T + Sbjct: 321 SGLTVEKVRVISELALEPLSLDAPVGEEGDTRYGDLLANDE-PTPADMLARRRLIEQTRE 379 Query: 547 VLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEV 606 +L L RE ++LR RFG+D N D TLEE+G+ F +TRERIRQIEAK L KLR SR Sbjct: 380 LLDSLQPRERELLRRRFGLDGNEDETLEEIGQSFSLTRERIRQIEAKLLEKLRTRSRQRE 439 Query: 607 LRSFLD 612 L S+L+ Sbjct: 440 LGSYLE 445 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 47/128 (36%), Gaps = 3/128 (2%) Query: 100 MYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLS 159 +Y R + + LTREGE+ I +RIE G + P A+ L + V+ L Sbjct: 50 LYFRALAGSQPLTREGEVAIGRRIEAGALACFEAWVRSPVALRELASTAEDVQVGALSLR 109 Query: 160 DLITGFVDPNAEEDLAPTATHVGSELSQEDLD---DDEDEDEEDGDDDSADDDNSIDPEL 216 DL+ + E D + L++ L ++ + + + +DP Sbjct: 110 DLLCEADAGDPEADASAKRLAELLTLARSLLGRQITEDGVETALAGLAAGLAELRLDPTF 169 Query: 217 AREKFAEL 224 L Sbjct: 170 EERIERSL 177 >UniRef50_D0LPW6 RNA polymerase sigma factor n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LPW6_HALO1 Length = 465 Score = 250 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 98/271 (36%), Positives = 170/271 (62%), Gaps = 3/271 (1%) Query: 340 ALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGL 399 A +K Q ++ ++ E AR A+ E V+ANLRLV+SIA+++ + + Sbjct: 194 ARRKSQVRNVSFSTRRADFRNYVDQVRAAEHAARNARNEFVKANLRLVVSIARRFNHGRM 253 Query: 400 QFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIET 459 DLIQEGN+GL+KAV++++YRRG++FSTYA+WWIR AI R++AD+ R +R+PVHM++ Sbjct: 254 SLADLIQEGNLGLIKAVERYDYRRGFRFSTYASWWIRHAIGRALADKGREVRLPVHMLDA 313 Query: 460 INKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVL-KIAKEPISMETPIGDDEDSH 518 ++L + Q+ +GR+PT EEL+E + +KI K+ + + +S++ P+ D++ Sbjct: 314 HHRLLKAQHQLTNTLGRQPTSEELSEAANLSVEKIEKMRTHLLDQALSLDRPMNDEDGRS 373 Query: 519 LGDFIEDTTLE--LPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEV 576 + + ++D E L+ ++ L L EA +LR RFG+D + + TL+++ Sbjct: 374 VAEVLQDPHGEEHSALNVLAQRTMSDEVRKTLQTLRPIEADILRRRFGLDNDEELTLKQI 433 Query: 577 GKQFDVTRERIRQIEAKALRKLRHPSRSEVL 607 G+Q++++RERIRQ++ +AL K+R R + + Sbjct: 434 GEQYNLSRERIRQLQEQALTKMRVALRRKAM 464 >UniRef50_UPI00003842B2 COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI00003842B2 Length = 756 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 120/256 (46%), Positives = 162/256 (63%), Gaps = 7/256 (2%) Query: 354 TIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLM 413 T + RRM G ARRA++ ANL+LV+ AKK+ GL + D IQEGN+GL+ Sbjct: 506 TDPSGGEARRRMEAGLETARRARERFALANLKLVVWGAKKFG--GLTWPDRIQEGNLGLL 563 Query: 414 KAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQE 473 KAV++F++RRG KFSTYATWWI+QA+TR++AD+ RTIRIPVH E + KL R ++ Sbjct: 564 KAVERFDHRRGAKFSTYATWWIKQAVTRAVADKGRTIRIPVHAQEAMRKLRRAQNEVFAL 623 Query: 474 MGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLD 533 GRE PEE+ E +P ++R+ L +A+EP S++ E+ L + P + Sbjct: 624 TGREALPEEVGELTEIPLARVRRFLAVAEEPASLDV-----EEVGLHAAEMASREPDPEE 678 Query: 534 SATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAK 593 ++A L L REA V+R+RFGI +YTLEE+G+QF VTRERIRQIEAK Sbjct: 679 RLAVAEIKAMVRGQLELLPPREATVIRLRFGIGCEREYTLEEIGQQFGVTRERIRQIEAK 738 Query: 594 ALRKLRHPSRSEVLRS 609 ALRKL HP R + L+ Sbjct: 739 ALRKLSHPGRIKALQG 754 Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 7/120 (5%) Query: 47 MINDMGIQVMEEA--PDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMRE 104 M+ DMG+ V ++ PD A + D+ + A+ L+ + + DP+ Y Sbjct: 303 MLGDMGVVVDDDPFSPDRPSETGASDDEDDRFQDEVAEGLAFLRNLNSNRADPLTHY--- 359 Query: 105 MGTVEL--LTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLI 162 +G + LTR+ E +A IE G +VA P A++ LL + V E D++ Sbjct: 360 IGGLPRDRLTRDDEASLAMEIERGTKAALAAVAMSPAAVSELLTAVEAVIRGETPPQDVL 419 >UniRef50_Q21TX3 RNA polymerase sigma factor n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21TX3_RHOFD Length = 726 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 108/253 (42%), Positives = 157/253 (62%), Gaps = 6/253 (2%) Query: 357 QVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV 416 +V++ S R+A+ +MV ANL+LV+ IAKKY G DL+QEGNIGL+KAV Sbjct: 353 EVQESAIEFSQAMQAYRQARDQMVIANLKLVLFIAKKYLYSGQPLDDLLQEGNIGLIKAV 412 Query: 417 DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGR 476 D++++RRG+K STYATWWIRQ + R +AD+++TIR+PVH+ ++ + + GR Sbjct: 413 DRYDWRRGFKLSTYATWWIRQQVGRYVADKSKTIRLPVHVYVKTQQIAHAAHAIELATGR 472 Query: 477 EPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHL--GDFIEDTTLELPLDS 534 PT EE+A++M MP K+ + EP+ PI D + L D ++ P+D Sbjct: 473 MPTIEEIAKKMEMPASKVAPLALAIPEPL----PIHDVDVDSLIAIDAQDNYVARDPMDI 528 Query: 535 ATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKA 594 + L + LA L ++ +VLR+RFGI + TLEE+G + +VTRERIRQIEAKA Sbjct: 529 VSDSQLIGSIDRFLATLKPKDEQVLRLRFGIGAHEAMTLEEIGTRLEVTRERIRQIEAKA 588 Query: 595 LRKLRHPSRSEVL 607 + L+HP+R E L Sbjct: 589 ICHLKHPARLERL 601 Score = 86.2 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 40/168 (23%), Positives = 76/168 (45%), Gaps = 5/168 (2%) Query: 48 INDMGIQVMEE----APDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMR 103 IND+G + + PD ++ D + + L+ +++ R DP+R+Y + Sbjct: 134 INDVGAETDDRFEYCTPDESFEVVVAPEMTPDEEDTVTEALAFIDNLAERRNDPLRIYQK 193 Query: 104 EMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLIT 163 E LLT + E+ + + +E G+ Q ++A +P I +L+ V++E L L + Sbjct: 194 EFQNATLLTADEEVALGQGMERGVQQALDALAVWPSGIGAVLDAVHMVKSEAKPLRWLSS 253 Query: 164 GFVDPNAEEDLAPTA-THVGSELSQEDLDDDEDEDEEDGDDDSADDDN 210 G + +++ A S LS E + D++ D + G D D Sbjct: 254 GPRAELQDIEISSNAEPAADSVLSVEGIGTDDESDSQFGHDAHESTDE 301 >UniRef50_D2R4L7 RNA polymerase, sigma 70 subunit, RpoD subfamily n=8 Tax=Planctomycetaceae RepID=D2R4L7_9PLAN Length = 320 Score = 249 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 98/256 (38%), Positives = 162/256 (63%), Gaps = 3/256 (1%) Query: 343 KLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL 402 L++I E L+ +++ ++ G+ + A+ MV ANLRLV++IA+ YT +GL Sbjct: 46 YLREINETALLSARDERELAAAIADGDVR---ARDRMVRANLRLVVNIARGYTGKGLSLQ 102 Query: 403 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 462 DLI+EGN+GL++AV+ F+ G +FSTYA++WI+Q+I R++ + A+TIRIP +M+E ++K Sbjct: 103 DLIEEGNLGLLRAVEGFDPAVGTRFSTYASYWIKQSIKRALINSAKTIRIPAYMVELLSK 162 Query: 463 LNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDF 522 R + ++ +E+GR PTPEE+A + + + K+ + K + S + LG+ Sbjct: 163 WRRATARLTEELGRGPTPEEVARVLGLAKKKLPIIKKAIRIYNSTPQTDQSEAGWSLGEI 222 Query: 523 IEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDV 582 + D L+ P D + + ++L + +REA VLRMRFG+ T +TL+E+G+ + Sbjct: 223 VMDERLKNPEDELVEQDVLKHVMEMLHTMDSREATVLRMRFGLGDTTPHTLKEIGESLGL 282 Query: 583 TRERIRQIEAKALRKL 598 TRER+RQIE +AL KL Sbjct: 283 TRERVRQIETEALGKL 298 >UniRef50_Q2JMC5 RNA polymerase sigma factor n=2 Tax=Synechococcus RepID=Q2JMC5_SYNJB Length = 319 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 101/280 (36%), Positives = 162/280 (57%), Gaps = 3/280 (1%) Query: 314 TWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIE--EETGLTIEQVKDINRRMSIGEAK 371 + + +E+ ++ +V R + L+Q + E +++ + + Sbjct: 13 RFLKTIGRYSLLTAEEELRLAHQVQRMVTLLEQRQPHESVEGWSQRLGIPLAELQQILRQ 72 Query: 372 ARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYA 431 AKK MVE NLRLV+SIAK+Y NRGL FLDLIQEG IGL +AV+KF+ RGYKFSTYA Sbjct: 73 GEAAKKRMVECNLRLVVSIAKRYRNRGLPFLDLIQEGTIGLTRAVEKFDPTRGYKFSTYA 132 Query: 432 TWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPE 491 TWWIRQ++ R I ++ R IR+P HM E ++++ R R++ E G P EE+ + + + + Sbjct: 133 TWWIRQSVNRGIQNKGRMIRLPAHMYEKVSQVKRRYRELSAERGSRPQAEEVFDSLDIGD 192 Query: 492 DKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGL 551 + + + E S+ +GD++ + L FI D + P++ T + R ++ L Sbjct: 193 NYRELITRHMAEMRSLNVGVGDEDGTELQHFIPDEDND-PVEHLTQLARREEVRALVGQL 251 Query: 552 TAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIE 591 + RE +V+ R+G+D + TL E+G+ ++RER+RQIE Sbjct: 252 SERERQVIVARYGLDGSRGLTLREIGEHIGLSRERVRQIE 291 >UniRef50_Q3LW61 Sigma 2 transcription factor n=1 Tax=Bigelowiella natans RepID=Q3LW61_BIGNA Length = 389 Score = 247 bits (631), Expect = 9e-64, Method: Composition-based stats. Identities = 110/386 (28%), Positives = 200/386 (51%), Gaps = 15/386 (3%) Query: 240 RSHATAQEEILKLSEVFKQFR--LVPKQFDYLVNSMRVMMDRVRTQERL--IMKLCVEQC 295 ++ + L+ K + ++ + + + + Sbjct: 2 KNSVKIIKLKKMLNNTSMTLENNYNIKNINRYSQPLKNSISKAYENRKASSVNNYKNNLD 61 Query: 296 KMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEK---LHDVSEEVHRALQKLQQIEEETG 352 + K + +E + N S + + +++ R ++E + G Sbjct: 62 NLFDKQIVDFSYIDELNKKKINLKHKNKNNTSTNESIIMEWVKDLLRWEDLFLKLENKLG 121 Query: 353 L------TIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQ 406 + + D+ + A + +K+ +++ +L+L+ISIAK+Y GL F DLI Sbjct: 122 FYPTIDFFTKGIIDLTSEIKERLAIGKISKEILIKRSLKLIISIAKRYNGCGLSFEDLIA 181 Query: 407 EGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRI 466 EG +GLMK + K+++ +G+KFSTYA WWIRQ+I+RSI DQ+R IR+PV++ E ++K+N+I Sbjct: 182 EGILGLMKGIRKYDFSKGHKFSTYAHWWIRQSISRSIDDQSRIIRLPVYVKEILSKINKI 241 Query: 467 SRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSH--LGDFIE 524 + ++ R PT EE++ + +P K+RK+L + IS+++ I +D + L D IE Sbjct: 242 KNKFYEDKKRYPTEEEISLLIGIPLKKLRKLLLSCNDLISLDSLIENDSNDSNMLNDSIE 301 Query: 525 DTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTR 584 D+ + A +SL+ + L L+ RE+ V+R+R+G+D + TLEE+G+ +VTR Sbjct: 302 DSKVINSEVYAIEKSLKQDLNKALLTLSDRESAVIRLRYGLDDGNERTLEEIGEYLNVTR 361 Query: 585 ERIRQIEAKALRKLRHPSRSEVLRSF 610 ER RQIE KAL+KL+ + + + + Sbjct: 362 ERARQIEIKALKKLQFNTSNYLFSDY 387 >UniRef50_Q1Z2N9 RNA polymerase sigma factor n=9 Tax=Photobacterium RepID=Q1Z2N9_PHOPR Length = 291 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 103/279 (36%), Positives = 165/279 (59%), Gaps = 4/279 (1%) Query: 328 EKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLV 387 +K + + L++I + LT + +R+ G+ +A++ M+E+NLRLV Sbjct: 4 KKAETQTFDADVIQLYLREIALKPLLTKHEEILYSRKSLTGDKEAKKV---MIESNLRLV 60 Query: 388 ISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA 447 +SIAKKY G+Q DLI EGNIGL+ +V+KF+ RG++FSTYATWWI+Q I R I +QA Sbjct: 61 VSIAKKYRGSGMQLSDLIDEGNIGLITSVEKFDPERGFRFSTYATWWIKQTIERCIHNQA 120 Query: 448 RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISM 507 RTIR+PVH+ + IN + R +Q++++ +EPT EE+AE++ D I VL +S Sbjct: 121 RTIRLPVHVSKEINTIIRTHKQLMKKNNQEPTREEVAEKLERSVDDISSVLAYDAPIVSF 180 Query: 508 ETPIGDDEDSHLGD-FIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGID 566 + I DD +S FI D + + P + ++ +L L R+ ++L RFG+ Sbjct: 181 DQTINDDANSQSISVFIADDSSDKPESQVDKDDIKGLALAMLENLNQRDREILCRRFGLL 240 Query: 567 MNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSE 605 TL++V + +TRERIRQ++ +L+KL++ + Sbjct: 241 GYEVQTLQQVANEVGLTRERIRQLQVSSLKKLKNTLERD 279 Score = 42.7 bits (99), Expect = 0.044, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Query: 96 DPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEE 155 D +++Y+RE+ LLT+ EI +++ G + + + E + ++ + Sbjct: 14 DVIQLYLREIALKPLLTKHEEILYSRKSLTGDKEAKKVMIES--NLRLVVSIAKKYRGSG 71 Query: 156 ARLSDLIT 163 +LSDLI Sbjct: 72 MQLSDLID 79 >UniRef50_Q4A5V6 RNA polymerase sigma factor n=3 Tax=Mycoplasma RepID=Q4A5V6_MYCS5 Length = 798 Score = 247 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 121/324 (37%), Positives = 192/324 (59%), Gaps = 22/324 (6%) Query: 306 FTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRM 365 F+ +E + S KL + ++ V ++ + + + LT ++ KD+ M Sbjct: 473 FSPDEIDLQ--IDEENKKQDLSNKLTETTDIVKWYMRWIGKYGK--LLTPQEEKDLAEEM 528 Query: 366 SIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGY 425 G ++ +RA+ +++ NLRLV++ AKKY NRGL F+DL+ EGN GL+KA KF+ ++G+ Sbjct: 529 DKGGSRGKRARDLIIKRNLRLVVNAAKKYKNRGLSFIDLVSEGNAGLLKAAQKFDIKKGF 588 Query: 426 KFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAE 485 KFSTYATWWIRQ+I+R++ADQAR IR+PVHM+ETINK+ +I R++ QE G E EE+A Sbjct: 589 KFSTYATWWIRQSISRAVADQARIIRVPVHMVETINKIYKIEREIQQENGGEIIDEEIAA 648 Query: 486 RMLMPEDK-----IRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESL 540 R+ K IR + KI PIS++ +G + DS GDF++D ++ P++ A E L Sbjct: 649 RLGGKSKKYDASYIRYIRKINTSPISLDKQVGKENDSFFGDFVKDESIISPVEFADKEEL 708 Query: 541 RAATHDVLAG-LTAREAKVLRMRFGIDMN------TDYTLEEVGKQF-----DVTRERIR 588 + + L+ EA +++ GI + TL+E+ K F +++ER+R Sbjct: 709 ITKINYYVEKLLSEAEADLIKRYHGIGYDAKGNPVRSATLDEISKDFRGEGKKISKERVR 768 Query: 589 QIEAKALRKLR-HPSRSEVLRSFL 611 QI K +KLR +P E+ +F+ Sbjct: 769 QIITKIYKKLRGYPEVVELFENFI 792 >UniRef50_B1ZRN1 RNA polymerase sigma factor n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZRN1_OPITP Length = 347 Score = 247 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 103/262 (39%), Positives = 146/262 (55%), Gaps = 4/262 (1%) Query: 340 ALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGL 399 LQ I + LT + + R+ G+A A+ M+ ANLRLV+ IAK Y GL Sbjct: 35 LQIYLQDIGQTPLLTAREEFALAERVRRGDAG---ARDHMIRANLRLVVRIAKDYAQYGL 91 Query: 400 QFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIET 459 DLI EGN+GL+ AVD+F+ R G K STYA WWIRQAI R+ A AR IR+PVHM++ Sbjct: 92 PLADLISEGNVGLIHAVDRFDPRIGGKLSTYAAWWIRQAIRRAFAHHARAIRLPVHMLDR 151 Query: 460 INKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDS-H 518 I +L R + ++ GRE T +ELA + P +KI P S++ +G +S Sbjct: 152 IARLRRAQASLSEQFGREATTDELAAELQAPVEKIALWKSAGDAPFSLDAAVGTGSESRR 211 Query: 519 LGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGK 578 L + I D + ++A L REA +LR+RFG+D + TL V Sbjct: 212 LSETIRDERAPTAFTQLRDATTARDLRAIIATLDVREATILRLRFGLDGDEPQTLHAVSL 271 Query: 579 QFDVTRERIRQIEAKALRKLRH 600 +F +TRER+RQ+E +AL+ +R+ Sbjct: 272 RFGITRERVRQLERRALQNVRN 293 >UniRef50_C7LZN3 RNA polymerase sigma factor n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LZN3_ACIFD Length = 294 Score = 246 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 98/289 (33%), Positives = 161/289 (55%), Gaps = 2/289 (0%) Query: 327 SEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKA--RRAKKEMVEANL 384 E L + R + +EE L+I + + A + A++ VE N+ Sbjct: 6 PEALDGARAVLARGRRGRLLPDEEVALSIVLQEAQEAEDVPPDVAAVVQAARERFVEGNM 65 Query: 385 RLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIA 444 LV+SIA++Y G+ DL+QEG IGL++A+D ++ RRG++FSTYATWWIRQAI +++ Sbjct: 66 GLVVSIARRYVQPGISLDDLVQEGTIGLLRAIDLYDGRRGFRFSTYATWWIRQAIAQALT 125 Query: 445 DQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEP 504 R + +P + + ++ R++ Q +GR+P+ ELA + E ++R++ A+ Sbjct: 126 RTRRDVVLPRGIAAELARVEVQRRELEQALGRQPSMAELAAASGIDELRVRELQGYARSV 185 Query: 505 ISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFG 564 +S++ +G++ D L D + D E ++ LR LA L RE +VL RFG Sbjct: 186 LSLDQAVGEERDVTLADIVPDRDAEPIEETIEHADLRTVIAGALAHLEPREREVLAFRFG 245 Query: 565 IDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 ++ N ++LE+ F + RERIRQIEA+A+ +LR + VLR L+D Sbjct: 246 LEGNEPHSLEDAAAYFGIARERIRQIEARAIARLRRGDLAPVLRRVLED 294 >UniRef50_O24621 Sigma factor 3 n=3 Tax=Brassicaceae RepID=O24621_ARATH Length = 571 Score = 245 bits (625), Expect = 5e-63, Method: Composition-based stats. Identities = 85/297 (28%), Positives = 153/297 (51%), Gaps = 5/297 (1%) Query: 317 NAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAK 376 ++ + + ++ K+ + K + R + G + Sbjct: 278 ETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYG----WYCR 333 Query: 377 KEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIR 436 E+V++ LV+ +A+ Y G+ DLIQ G +G+++ ++F++ RGYKFSTY +WIR Sbjct: 334 DELVKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIR 393 Query: 437 QAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMG-REPTPEELAERMLMPEDKIR 495 ++++ ++ AR + IP +I TIN + + + + G + EE+A+ KIR Sbjct: 394 KSMSTMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIR 453 Query: 496 KVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTARE 555 + K S++ +GD + +F DTT+E P ++ +S R HD+L GL RE Sbjct: 454 AANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPRE 513 Query: 556 AKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 +V+ +R+G+ +LEE+GK V++E IR+IE +A+ KLR +E LR +L+ Sbjct: 514 KQVMVLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAMAKLRDQPNAEDLRYYLN 570 >UniRef50_C5RI15 RNA polymerase sigma factor n=1 Tax=Clostridium cellulovorans 743B RepID=C5RI15_CLOCL Length = 427 Score = 244 bits (622), Expect = 9e-63, Method: Composition-based stats. Identities = 108/250 (43%), Positives = 146/250 (58%), Gaps = 6/250 (2%) Query: 370 AKARRAKKEMVEANLRLVISIAKKYTNRG-LQFL--DLIQEGNIGLMKAVDKFEYRRGYK 426 K +A +V AN +LV IA +Y + F D+ Q G +GLMKA +KF+ +G + Sbjct: 176 RKREQALDNLVNANKKLVWEIALRYKQFSTVSFDNSDMYQAGVLGLMKAAEKFDISKGNQ 235 Query: 427 FSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAER 486 FSTYATWW+RQ+ITRSIAD + TIRIPVHM E I K + E GR + EELA Sbjct: 236 FSTYATWWVRQSITRSIADYSTTIRIPVHMREKIIKYVSTENKFWNENGRVASKEELANL 295 Query: 487 MLMPEDKIR--KVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAAT 544 + + +++ +V + S++ PIG DE S LG+FI D P SA L+ Sbjct: 296 LGISSEEVNYLQVYQDVANLTSLDIPIGADEGSFLGEFIPDDKHRSPEKSAEEGELKREL 355 Query: 545 HDVLAG-LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 603 ++ G LT +E ++L RFG +TLEE+G +VTRERIRQIEAKA+ KL++P Sbjct: 356 KEICEGRLTPKETRILNFRFGFIDGRTHTLEEIGHVENVTRERIRQIEAKAISKLQNPKI 415 Query: 604 SEVLRSFLDD 613 E LR F D Sbjct: 416 LERLRDFYYD 425 >UniRef50_A8Z659 RNA polymerase sigma factor rpoD n=5 Tax=Flavobacteriales RepID=A8Z659_SULMW Length = 351 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 83/238 (34%), Positives = 147/238 (61%), Gaps = 1/238 (0%) Query: 374 RAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW 433 A +V+ANLR VISIAK+Y N+GL DLI EGN GL+K +++F+ R+G+K +Y W Sbjct: 113 YALDNLVKANLRFVISIAKQYQNQGLSLSDLINEGNFGLIKGINRFDERKGFKCISYCVW 172 Query: 434 WIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDK 493 WIRQ+I ++I+D+AR +R P + + NK+N+ ++ Q++ P+ + +++ + + E Sbjct: 173 WIRQSILQAISDKARCVRYPTNKLAFYNKVNKTYSKLEQKLKMPPSIKYISDYLNVSEKD 232 Query: 494 IRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTA 553 + + L + + S++ P+G+ ++S+L D I+ S ESL+ +L L+ Sbjct: 233 VEEALINSIKHTSLDAPLGEGDNSNLYDVIKIDESPKTDHSLEKESLQQDIKILLETLSE 292 Query: 554 REAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 RE++++ + +G+ LE++ +TRER RQIE A+++L+ SR E+L S+L Sbjct: 293 RESQIITLHYGLGCF-SMNLEKIAYLLKLTRERCRQIEMHAIKRLKKSSRKEILLSYL 349 >UniRef50_C0QYD2 RNA polymerase sigma factor n=2 Tax=Brachyspira RepID=C0QYD2_BRAHW Length = 309 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 94/280 (33%), Positives = 167/280 (59%) Query: 334 SEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKK 393 EE+ + + L ++ +++ + + + ++V++NLRLVISIAK+ Sbjct: 30 EEELDLWQRLEVCRNDRALLENNDDEESLKKIEEIDKEIDSIQHKLVKSNLRLVISIAKR 89 Query: 394 YTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIP 453 Y N G+ F+D+I EGNIGL++AV +FEY++G+KFSTY WWI+Q+I + I+ + IR P Sbjct: 90 YYNSGVPFIDIIDEGNIGLIEAVKRFEYKKGFKFSTYGVWWIKQSIVKEISSKRHIIRFP 149 Query: 454 VHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGD 513 +H+ I K + S+ + Q++GR+PT +E+++ M + + ++ ++ S+++ + Sbjct: 150 MHIARLIKKSIQTSKTLTQKLGRDPTIDEISKEMKIDRKTLSYIMIFTQDTASVDSFFRN 209 Query: 514 DEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTL 573 +++ + IED P A +SLR + L L +E V+ R+G+ TL Sbjct: 210 SDNNDMTSIIEDKNFPSPHQKAFMDSLRDTLTEALKCLDEKERTVIISRYGLYGKEAKTL 269 Query: 574 EEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 E+ GK+ ++TRER+RQI+ KA++KL + S+ L+SFL D Sbjct: 270 EDTGKELNITRERVRQIQIKAIKKLAGLNLSKELKSFLWD 309 >UniRef50_B6J9R7 RNA polymerase sigma factor RpoD n=1 Tax=Oligotropha carboxidovorans OM5 RepID=B6J9R7_OLICO Length = 387 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 120/345 (34%), Positives = 190/345 (55%), Gaps = 14/345 (4%) Query: 271 NSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKL 330 +R +DRV + +L + C + + + + +E D + + K + ++ Sbjct: 50 ELLRSDIDRVYLRRKLTIAECATVEQQLRALGVRIVEDDEDEDNQTEPSNSQKKKYLNEM 109 Query: 331 HDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISI 390 + R L + ++ ++ + + R + A+ +AK VE+NL V + Sbjct: 110 EE------RELGRTIRLAKDIQYAALEDLNQYERQLVHRAE--KAKARFVESNLLYVRKL 161 Query: 391 AKKYTN-RGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQART 449 A + N + L DL QEG +GL+KA + F+ G++F TYATWWI+Q ++R++ D RT Sbjct: 162 ANRKRNLKHLTADDLFQEGLMGLLKATELFDPELGFRFKTYATWWIQQYMSRALDDGDRT 221 Query: 450 IRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLK--IAKEPISM 507 IR+PVH E K+ R + ++ E+GREPT ELA + + +++ K+L E + Sbjct: 222 IRLPVHRHEYFRKIKRKTAKLTFELGREPTLNELATELGLERERLAKLLWRLHVTECVEA 281 Query: 508 ETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDM 567 + PIG ED+ + + D + LD + LR VLA L RE +++RMRFG+D Sbjct: 282 DAPIG--EDTTVLSYKADES-PSILDLVALQQLRTMVARVLATLVPREERIIRMRFGLDG 338 Query: 568 NTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 + + TLE +G F VTRERIRQIEAKALRKL+HPSRS LR+FL+ Sbjct: 339 SGEQTLEAIGNVFGVTRERIRQIEAKALRKLKHPSRSRALRTFLE 383 >UniRef50_C4V1Y7 RNA polymerase sigma factor n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V1Y7_9FIRM Length = 352 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 106/255 (41%), Positives = 155/255 (60%), Gaps = 9/255 (3%) Query: 365 MSIGEAKARRAKKEMVEANLRLVISIA----KKYTNRGLQFLDLIQEGNIGLMKAVDKFE 420 ++ + +A++++ N +LV A K+Y +R L F D+ Q G IGL+ A KF+ Sbjct: 100 CAMIQQGNLQAEQDLCVKNKKLVDKYALGYEKRYRHR-LDFDDIEQAGFIGLITAAKKFD 158 Query: 421 YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTP 480 GY FSTYA WWI+QAITR I D IRIPVHM+E I K+ + M E+ RE Sbjct: 159 ISMGYSFSTYAVWWIKQAITREIMDHGFVIRIPVHMMEQIIKVAGV-ENMFSELNREERI 217 Query: 481 EELAERMLMPEDKIRKVLKIAKEPI---SMETPIGDDEDSHLGDFIEDTTLELPLDSATT 537 ++ + E+++R+ + + + + S+ +G+DE LG+F+ D + Sbjct: 218 VKVMDETGYKEERVRECMMLKEYVLTYSSLNVTVGEDETVELGEFLSDDGAISIEEMIEN 277 Query: 538 ESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRK 597 + LR DVL LT +E KV+++RFG++ N +TLEEVGK F+VTRERIRQIE+KALRK Sbjct: 278 KELRRMLDDVLNTLTEKEKKVIKLRFGLEDNRQWTLEEVGKLFNVTRERIRQIESKALRK 337 Query: 598 LRHPSRSEVLRSFLD 612 LRHPSR ++SFL+ Sbjct: 338 LRHPSRLHNIKSFLE 352 >UniRef50_A2PYK3 RNA polymerase sigma-subunit (Fragment) n=11 Tax=Enterobacteriaceae RepID=A2PYK3_ECOLX Length = 226 Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats. Identities = 223/226 (98%), Positives = 225/226 (99%) Query: 122 RIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHV 181 RIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHV Sbjct: 1 RIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHV 60 Query: 182 GSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRS 241 GSELSQEDLDDDEDEDEEDGDDD+ADDDNSIDPELAREKFAELRAQY+VTRDTIKAKGRS Sbjct: 61 GSELSQEDLDDDEDEDEEDGDDDTADDDNSIDPELAREKFAELRAQYIVTRDTIKAKGRS 120 Query: 242 HATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKN 301 HA AQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKN Sbjct: 121 HAAAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKN 180 Query: 302 FITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI 347 FITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI Sbjct: 181 FITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI 226 >UniRef50_B7KLN9 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7KLN9_CYAP7 Length = 308 Score = 242 bits (617), Expect = 3e-62, Method: Composition-based stats. Identities = 101/312 (32%), Positives = 169/312 (54%), Gaps = 14/312 (4%) Query: 300 KNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTI--EQ 357 +F+ + N T N++ ++ +K+ + H+ +Q ++ ++T + Sbjct: 8 NSFLDSYLKNFTRYELLNSSQEID--LGQKIQKWQKLKHQFVQFQKKTGKKTSVFDFCSD 65 Query: 358 VKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD 417 + + + ++AK ++V+ NLRLVI++AKKY RGL F DL+QEGNIGL++A + Sbjct: 66 FQLEEAEFYLVYEEGQQAKNQLVQGNLRLVINLAKKYLGRGLSFEDLLQEGNIGLIRAAE 125 Query: 418 KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE 477 FE +GYKFSTYA WWIRQ I R+I + ARTIR+PVH+I +N++ + ++ ++GR Sbjct: 126 LFEPSKGYKFSTYAYWWIRQQIIRAINNSARTIRLPVHIIARLNRIKKTQHKLAAQLGRT 185 Query: 478 PTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATT 537 PT +E+A + M +I K ++A++ IS+ T + + L D I D + D Sbjct: 186 PTVQEIATSLQMSAQEIEKYREVAQKTISLSTIVDEQGRETLQDLIADPNPQP--DFLER 243 Query: 538 ESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRK 597 + + L R +L+ R + TLE +G +++ER+RQI KAL + Sbjct: 244 VFSYEQILEKMETLPPRYQDILKKRI----YEEQTLEAIGTSTKLSKERVRQIFQKALSR 299 Query: 598 LRHPSRSEVLRS 609 LR E L+ Sbjct: 300 LRE----EFLKD 307 >UniRef50_C6JJT6 RNA polymerase sigma factor n=5 Tax=Fusobacterium RepID=C6JJT6_FUSVA Length = 275 Score = 242 bits (617), Expect = 4e-62, Method: Composition-based stats. Identities = 96/263 (36%), Positives = 161/263 (61%), Gaps = 5/263 (1%) Query: 343 KLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL 402 L I + L ++ ++ + G+ + +K +++ +NLRLV++IAK Y N+GL F+ Sbjct: 12 YLADIRKYKILDKDEELNLLIKAKAGDEE---SKNQLILSNLRLVVNIAKGYINKGLSFI 68 Query: 403 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 462 DLI EGN+GL+ A++KF+ +G++FSTYA WWI+Q+I++++ + R IRIP + + +NK Sbjct: 69 DLISEGNLGLIYAIEKFDITKGFRFSTYAVWWIKQSISKAVIVKGREIRIPSYKYDLLNK 128 Query: 463 LNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDF 522 +NR L++ G P EE+A + + DKI+ ++ ++P+S+ T IGDD +L D Sbjct: 129 VNRYVMSRLKDEGNYPPVEEIAAELNIDVDKIQDIIMDFQDPMSLSTQIGDD--IYLEDT 186 Query: 523 IEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDV 582 + + E R D++ L RE ++L++R+G+D +TLEE+G ++ Sbjct: 187 LAQQEDFSMEEEIFNEMGRKQVRDMVNQLEEREKEILKLRYGLDGYEIHTLEEIGNTLNI 246 Query: 583 TRERIRQIEAKALRKLRHPSRSE 605 TRER+RQIE K L+KLR E Sbjct: 247 TRERVRQIEKKTLQKLRSKYTKE 269 >UniRef50_A1TWY8 RNA polymerase, sigma 32 subunit, RpoH n=2 Tax=Marinobacter RepID=A1TWY8_MARAV Length = 330 Score = 241 bits (616), Expect = 5e-62, Method: Composition-based stats. Identities = 75/246 (30%), Positives = 135/246 (54%) Query: 354 TIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLM 413 ++ + R A + ++++NLRL + IA++Y + G+ DLIQ+ N+GL+ Sbjct: 75 SLGDACAFSARCRRAYHLALACRHRLIQSNLRLAVHIARRYGHHGIAMSDLIQDANVGLI 134 Query: 414 KAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQE 473 KAV++++ +G++FSTYA WWI + + R + R + P +++E I +L ++S ++ Q Sbjct: 135 KAVERYDPGKGFRFSTYAYWWISEEVRRCLQRGVRVVHTPENVVEEIRQLQKVSMRLHQS 194 Query: 474 MGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLD 533 +GREPT ELA M +I ++ +A +S + P+ +D L D ++ P Sbjct: 195 LGREPTQSELAREMEATPSRIGELRALAAREVSTDVPLVEDGSVTLADSLDAGADTRPDQ 254 Query: 534 SATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAK 593 ++ L+ RE +L R+G+ + TL+ + +Q ++RER+RQIE Sbjct: 255 PFRARDRMIRLERMMGALSDRERDILTRRYGLGLIEPETLQTISEQLGLSRERVRQIEKG 314 Query: 594 ALRKLR 599 ALRKL+ Sbjct: 315 ALRKLQ 320 >UniRef50_A7MZX8 RNA polymerase sigma factor n=1 Tax=Vibrio harveyi ATCC BAA-1116 RepID=A7MZX8_VIBHB Length = 287 Score = 241 bits (615), Expect = 7e-62, Method: Composition-based stats. Identities = 92/276 (33%), Positives = 164/276 (59%), Gaps = 4/276 (1%) Query: 329 KLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVI 388 K+++ S E+ L I + L+ + ++ RR +G+A A+ M+ +NLRLV+ Sbjct: 7 KINNNSSELTAELIYFNDIGKYALLSADDEREYARRAKMGDAD---ARTRMINSNLRLVV 63 Query: 389 SIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQAR 448 +IAK+Y RGL FLDLI EGNIGLM+AV+KF+ +G++FSTYAT WIRQ+I R + +QAR Sbjct: 64 NIAKRYKGRGLTFLDLISEGNIGLMRAVEKFDPEKGFRFSTYATHWIRQSIERELMNQAR 123 Query: 449 TIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISME 508 T+R+PVH+ + + + + ++++ Q+ + TP ++A+ + +P + K L+ K IS++ Sbjct: 124 TVRLPVHINKELKRYVKATKELSQKT-QTITPRDIADHLEIPVSSVLKHLEFDKSTISLD 182 Query: 509 TPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMN 568 + +E L + + L P ++ + L +L R+G+D N Sbjct: 183 SYQDKEEAKPLAETMACHRLRCPELELEEDNAFLMLLQWIEELEPDLKLILTRRYGLDGN 242 Query: 569 TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRS 604 T +L+ VG + +RERIR ++ + ++KL++ +++ Sbjct: 243 TPTSLDTVGTELGYSRERIRHLQMQGIKKLQNLAKN 278 >UniRef50_A8ZPW9 RNA polymerase sigma-70 factor, putative n=10 Tax=Acaryochloris marina MBIC11017 RepID=A8ZPW9_ACAM1 Length = 274 Score = 241 bits (615), Expect = 7e-62, Method: Composition-based stats. Identities = 95/260 (36%), Positives = 154/260 (59%), Gaps = 5/260 (1%) Query: 343 KLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL 402 L++I L+ E+ + R+++ G RAK+ ++E NLRLV+SIAKK+ NRGL Sbjct: 11 YLKEIARYPILSHEEEILLARQVNAG---NLRAKQRLIECNLRLVVSIAKKHQNRGLPLQ 67 Query: 403 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 462 DLIQEG+IGL AVDKF+ +G +FSTYA WWIRQ +T ++ ++R I +P + E I+K Sbjct: 68 DLIQEGSIGLSNAVDKFDLAQGCRFSTYAYWWIRQGVTAALRAKSRPIYLPQYQWEMISK 127 Query: 463 LNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDF 522 + + R++ Q++GREP+ ELA+ + I + L + ++ S++ P+G + L D Sbjct: 128 IKKHFRELNQQLGREPSLSELAKATNLKPKTISRTLHLFQKVSSLDQPVGHQQKDTLLDL 187 Query: 523 IEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDV 582 + + P + L V+A L RE VL RFG++ + ++ E+G+Q + Sbjct: 188 MAGE--DQPTLYLESLQLDEQLSQVMAHLDKREQFVLSQRFGLEDDQPKSMREIGEQIGL 245 Query: 583 TRERIRQIEAKALRKLRHPS 602 +RE IR I K ++KL+ + Sbjct: 246 SREGIRLILNKIMKKLQKNT 265 Score = 46.1 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 32/67 (47%), Gaps = 2/67 (2%) Query: 96 DPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEE 155 D + Y++E+ +L+ E EI +A+++ G + + + E + ++ + + Sbjct: 6 DSLHFYLKEIARYPILSHEEEILLARQVNAGNLRAKQRLIEC--NLRLVVSIAKKHQNRG 63 Query: 156 ARLSDLI 162 L DLI Sbjct: 64 LPLQDLI 70 >UniRef50_B7FPT1 Predicted protein n=2 Tax=Bacillariophyta RepID=B7FPT1_PHATR Length = 324 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 96/252 (38%), Positives = 149/252 (59%), Gaps = 12/252 (4%) Query: 373 RRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT 432 R AK+ MV++N+RLV+SIA+KY+N G+ DL+QEG++GL +A +KFE ++G+KFSTYA+ Sbjct: 69 REAKQRMVQSNMRLVVSIARKYSNVGVSLQDLVQEGSLGLSRAAEKFEPKKGFKFSTYAS 128 Query: 433 WWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPED 492 WWI+QA+ RSIA +RTIR+PVH+ +N++ ++ + +E+ R PT EE+AE + M Sbjct: 129 WWIQQAVFRSIAYHSRTIRLPVHVHNLLNRVRKVRNNLQRELSRTPTNEEMAEELGMTLQ 188 Query: 493 KIRKVLKIAKEPISMETP--------IGDDEDSHLGDFIEDTTL----ELPLDSATTESL 540 K K+L++ K IS+ETP +G + LGD I ++ P Sbjct: 189 KYNKMLRLTKRSISLETPKYQSNPKDLGHESHDLLGDTISASSALFDESTPEKRVDRGIF 248 Query: 541 RAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 600 H++L L E +V+ R+G+ T+ V Q ++ +R E +ALRKLR Sbjct: 249 HEDLHEMLEILDEDERRVICSRYGLSDGLTRTVTAVASQMKQSKAWVRSQECRALRKLRR 308 Query: 601 PSRSEVLRSFLD 612 P + L+ D Sbjct: 309 PWYEKKLKEHQD 320 >UniRef50_A6GB19 RNA polymerase sigma factor n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GB19_9DELT Length = 384 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 107/382 (28%), Positives = 196/382 (51%), Gaps = 11/382 (2%) Query: 236 KAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQC 295 + S Q ++L + + + L +R ++D + + L +++ Sbjct: 3 ACETYSSDEEQSAAVRLRKARSERWAALVSYPPLYPGVRKLIDERLEVDAALSDL-LDRV 61 Query: 296 KMPKKNFITLFT-GNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGL- 353 + + + T NE + A P + +++E + + ++ E + L Sbjct: 62 GVAAEAYRKRRTLANEAAFAELCVAAGEALPEVDVDSELAERLIADVDRIANNERDGLLL 121 Query: 354 -------TIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQ 406 + + R + R+ + +ANLRLV+S+A++ +N L DLIQ Sbjct: 122 DVPRMPGDSRPFRIFHERCRRTAGRVRKYTNDFAKANLRLVVSLARRLSNGRLPLQDLIQ 181 Query: 407 EGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRI 466 EGNIGL+KA+++F++R+G++FSTYA+WWIR +I+R+I ++ R +R+PVH+ + K+ R+ Sbjct: 182 EGNIGLLKAIERFDHRKGFRFSTYASWWIRHSISRAIYNKGRQVRLPVHVYDVHQKITRV 241 Query: 467 SRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPI-SMETPIGDDEDSHLGDFIED 525 R+ ++GREPT EE+A + +P K+ K+ I PI S++ P+ ++D D +ED Sbjct: 242 RRRYEAQIGREPTHEEIANEIGVPLAKVEKIAAIELGPIVSLDAPLSRNDDRSGVDLLED 301 Query: 526 TTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRE 585 P L D L+ L EA +LR R+G+D TL E+G+++ ++RE Sbjct: 302 QVSPGPGFELELGELEEGLEDALSALRPMEADILRRRYGLDGVEKETLREIGERYALSRE 361 Query: 586 RIRQIEAKALRKLRHPSRSEVL 607 RIRQ++ +A+ ++R L Sbjct: 362 RIRQLQERAVSRMREEFARRSL 383 >UniRef50_B8C8Z6 Predicted protein (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8C8Z6_THAPS Length = 338 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 98/336 (29%), Positives = 176/336 (52%), Gaps = 27/336 (8%) Query: 301 NFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKD 360 +I +E + L ++ L + + T V Sbjct: 5 TYIKSLGQHELLYKEDEVLLGRQVRLLMGLEGKRRDLEEELLRPPTFAQWASATNHTVPS 64 Query: 361 INRRMSIGEAKARRAKKEMVEANLRLVISIAKK-----------YTNRGLQFLDLIQEGN 409 + +++ +++RAK ++EANLRLVI++A++ + +QF D Q+G Sbjct: 65 LKQQI----RRSQRAKAALIEANLRLVITVARQAVKKSPFRSSSHAASSVQFQDACQQGI 120 Query: 410 IGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQ 469 IGL +A +KF+ G++FSTYA WWI++ + +++ +Q+RT+R+P I+ IN + R Sbjct: 121 IGLTRATEKFDPELGFRFSTYAIWWIQKEVAKNVNEQSRTVRVPGSAIKKINDIRIQERV 180 Query: 470 MLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPI------------GDDEDS 517 ++ E+GR P+ +E+AE+ + +K+ + AKE S++ I GDD+ Sbjct: 181 LMNELGRRPSDDEVAEKCGLTVEKLNFYRQSAKEVKSLDKKIDSRTGKGSAASGGDDDGK 240 Query: 518 HLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVG 577 + F+ DT P + + ++ ++ L+ RE V+R+RFG+D TL ++G Sbjct: 241 TMEIFVRDTEHPSPSELIDQQMMQQDIRRLVKTLSPREQAVIRLRFGLDDGKPQTLGDIG 300 Query: 578 KQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 ++F V +ERI++IEA+AL KLR PSRS V++ ++ D Sbjct: 301 EKFGVEKERIKKIEARALLKLRQPSRSSVVKCYVSD 336 >UniRef50_B5ES65 RNA polymerase sigma factor n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5ES65_ACIF5 Length = 316 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 93/283 (32%), Positives = 148/283 (52%), Gaps = 7/283 (2%) Query: 322 MNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVE 381 + W D + + LQ++ LT E+ + G+ A+ +VE Sbjct: 38 ADPAWEAGASDHFDAIKLYLQEI---GHNPLLTAEEEVSLGLSAQQGD---ITARNRLVE 91 Query: 382 ANLRLVISIAKKYTNRG-LQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAIT 440 NLRLV+ IA++Y + L LDLI+EGN+GL++A + F+ RG++FSTYATWWIRQ I Sbjct: 92 CNLRLVVRIARRYQRQHTLPLLDLIEEGNLGLIRAAELFDPTRGFRFSTYATWWIRQNID 151 Query: 441 RSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKI 500 R I Q+R +R+P H+I+ ++ + R SRQ+ Q M +P E++A+ M + L+ Sbjct: 152 RGIMQQSRVVRLPTHIIKNLSAVLRSSRQIAQTMQGDPRVEDVAQVMGKSVAYVEDCLQQ 211 Query: 501 AKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLR 560 + +S++ P + L + D S + L+ H L GL R +L Sbjct: 212 DRRVVSLDAPSRWEGSPSLAQTLVDADQADLGASLEEQDLQRQIHRALLGLDVRHRTILI 271 Query: 561 MRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 603 RFGID +L +GK+ V+ ER+RQ++ +AL LR + Sbjct: 272 RRFGIDGQDGASLSAIGKELGVSHERVRQLQEEALDLLRQHTE 314 Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 35/89 (39%) Query: 49 NDMGIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTV 108 D V + + ++ E + E A + E+ D +++Y++E+G Sbjct: 4 EDADGDVPDALEEIAEVGQDEACLWPETPEFDAIADPAWEAGASDHFDAIKLYLQEIGHN 63 Query: 109 ELLTREGEIDIAKRIEDGINQVQCSVAEY 137 LLT E E+ + + G + + E Sbjct: 64 PLLTAEEEVSLGLSAQQGDITARNRLVEC 92 >UniRef50_Q47D27 RNA polymerase sigma factor n=1 Tax=Dechloromonas aromatica RCB RepID=Q47D27_DECAR Length = 309 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 97/278 (34%), Positives = 156/278 (56%), Gaps = 4/278 (1%) Query: 324 KPWSEKLHDVSEEVHR-ALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEA 382 P E++ E + L +I + LT + +R + G+ A++ M+E Sbjct: 22 PPEPERVLPEIELLEDVTQLYLSEIGAKPLLTPAEELATSRLVREGDF---SARQRMIEH 78 Query: 383 NLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRS 442 NLRLV++IAK Y NRG+ LDLI+EGN+GL+ A++KF+ RG++FSTYATWWIRQ I R Sbjct: 79 NLRLVVNIAKHYLNRGIPLLDLIEEGNLGLIHALEKFDPERGFRFSTYATWWIRQNIERG 138 Query: 443 IADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAK 502 I +Q+RTIR+PVH+++ IN + R R + R+ T E +A + P +R++L + + Sbjct: 139 IMNQSRTIRLPVHIVKEINVVLRAMRHLESADKRDSTVERIALLIDRPVADVRRILSLNE 198 Query: 503 EPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMR 562 S++ P+ D + + + I D P + + + D L LT R+ V+ R Sbjct: 199 HIASLDAPLEIDPNHTMAEVIADDGESDPESLLQSSEVGSLVDDWLEQLTERQRSVIERR 258 Query: 563 FGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 600 +G+ TL+ + +TRER+RQI+ + L +LR Sbjct: 259 YGLSGADLATLDVIACDLGLTRERVRQIQMEGLDRLRK 296 >UniRef50_Q9KJT7 RNA polymerase sigma factor n=1 Tax=Peanut witches'-broom phytoplasma RepID=Q9KJT7_PEWBP Length = 458 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 113/260 (43%), Positives = 152/260 (58%), Gaps = 10/260 (3%) Query: 358 VKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD 417 + R + + + K++ +NLR+V+SIAKK + RG FLDLI EGN+GLMK VD Sbjct: 200 FNEFFRYVFNNQYSSHYGIKQL--SNLRIVVSIAKKQSERGQYFLDLIHEGNMGLMKTVD 257 Query: 418 KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEM--- 474 KF+Y +G+KFSTYATWWIRQAITR++ADQ+RTIR PVH+ + +NK ++ Q++ Sbjct: 258 KFDYTKGFKFSTYATWWIRQAITRAVADQSRTIRCPVHVSDILNKNFAFKSKLTQDLARK 317 Query: 475 GREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDS 534 R+ E+A+ M + K+ + K K F + + Sbjct: 318 ARKAENHEIAKAMNIETKKL-MIYKWLKRNDFFRNIYSWWRWFFFRWFYKRSLRYFASWL 376 Query: 535 ATTESLRAATHDVLAG-LTAREAKVLRMRFGI--DMNTDYTLEEVGKQFDVTRERIRQIE 591 T + + + L LT RE VL+MR+GI N +TLEEVG + VTRERIRQIE Sbjct: 377 YVTRNFKKTLEESLEEALTPREQLVLKMRYGILEGDNRVHTLEEVGAKLGVTRERIRQIE 436 Query: 592 AKALRKLRHPSRSEVLRSFL 611 KALRKLRHPSRS L SFL Sbjct: 437 TKALRKLRHPSRSNPL-SFL 455 >UniRef50_B5YES0 RNA polymerase sigma factor n=2 Tax=Dictyoglomus RepID=B5YES0_DICT6 Length = 413 Score = 237 bits (605), Expect = 9e-61, Method: Composition-based stats. Identities = 136/342 (39%), Positives = 201/342 (58%), Gaps = 74/342 (21%) Query: 343 KLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL 402 L++I + LT E+ ++ +R+ G+ + AKK+++EANLRLV+S+AK+Y RGL FL Sbjct: 75 YLKEIGKIPLLTPEEEIELAKRVEQGDEE---AKKKLIEANLRLVVSVAKRYIGRGLSFL 131 Query: 403 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 462 DLIQEGN+GL+KAV+KF++R+GYKFSTYATWWIRQAITR+IADQARTIRIPVHM+ET+NK Sbjct: 132 DLIQEGNLGLIKAVEKFDWRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETMNK 191 Query: 463 LNRISRQMLQEMGREPTPEELAERM-----------------LMPEDKIRKVLKIAKEPI 505 +++I+R + Q +GR+PT E++A+ + + +D+I ++ K++ E I Sbjct: 192 IHKITRLLTQNLGRKPTEEDIAKFLVIQQKLQEFGVYQESGEKISDDEIIEISKLSLEEI 251 Query: 506 SM-------------------------------------------ETPIGDDEDSHLGDF 522 + E + E L Sbjct: 252 AKKLVEMHLKAKNNKVPTKEEINEKAKELKHVLEEEIRQQTEKVREISMMGQEPLSLEMP 311 Query: 523 IEDTTLELPLDSATTESL-------RAATHDVLAGL----TAREAKVLRMRFGIDMNTDY 571 + + D + L + + + L + RE ++L++RFG++ N Sbjct: 312 VGEDEDNRLADFVENKDLSPADIAVQKSLKKDIEELLNELSEREREILKLRFGLEDNQPR 371 Query: 572 TLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 TLEEVGK F+VTRERIRQIEAKALR+LRHPSRS+ ++ +L+D Sbjct: 372 TLEEVGKLFNVTRERIRQIEAKALRRLRHPSRSKKIKDYLED 413 Score = 59.6 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%) Query: 60 PDADDLMLAENTADEDAAEAAAQVLSSVE-SEIGRTTDPVRMYMREMGTVELLTREGEID 118 D + + + D + + VE E DPV+MY++E+G + LLT E EI+ Sbjct: 33 EDHELVDSEDLYVDIKEDKIPENIEEEVEIPEDIELDDPVKMYLKEIGKIPLLTPEEEIE 92 Query: 119 IAKRIEDGINQVQCSVAEY 137 +AKR+E G + + + E Sbjct: 93 LAKRVEQGDEEAKKKLIEA 111 >UniRef50_C1DVG2 RNA polymerase sigma factor n=4 Tax=Hydrogenothermaceae RepID=C1DVG2_SULAA Length = 285 Score = 237 bits (605), Expect = 9e-61, Method: Composition-based stats. Identities = 88/275 (32%), Positives = 149/275 (54%), Gaps = 9/275 (3%) Query: 343 KLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL 402 ++ I + LT EQ K+I ++ +G+ + A ++++ +NLR VI+IAK+Y G+ Sbjct: 13 YIRSIYKIPLLTPEQEKEILEKIKLGDKE---AFQKLILSNLRFVINIAKRYAGYGIPLQ 69 Query: 403 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 462 DLI GNIGL++A +F+ +G KF +YA WWI+Q+I +++ + IR P + K Sbjct: 70 DLISAGNIGLIEAAKRFDPSKGVKFISYAIWWIKQSIINTLSQEGDIIRKPTKIQSLFQK 129 Query: 463 LNRISRQMLQEMGREPTPEEL-----AERMLMPEDKIRKVLKIAKEPISMETPI-GDDED 516 ++ + + REP+ +E+ E + + +D I L + IS++ PI DED Sbjct: 130 ISNAYFYLKDSLNREPSVDEIHSFLLREGLEVEKDTIENYLFFNQHFISLDEPILSQDED 189 Query: 517 SHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEV 576 HL D I ++ E E + ++L L+ RE ++L RFG+ TL+EV Sbjct: 190 IHLSDTISNSGTEDIERKLIDEDILKFIDELLDTLSPREKQILIHRFGLYGEEPKTLKEV 249 Query: 577 GKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 G ++RER+RQIE + L+KLR + + + Sbjct: 250 GNIVGISRERVRQIEIRLLKKLRKLATKRKIEDLI 284 >UniRef50_Q4BV73 RNA polymerase sigma factor n=1 Tax=Crocosphaera watsonii WH 8501 RepID=Q4BV73_CROWT Length = 386 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 100/256 (39%), Positives = 165/256 (64%), Gaps = 11/256 (4%) Query: 346 QIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLI 405 + +E G+++ +++ I +R +RAK++M++ANLRLV++++KKY +GL+F+DL+ Sbjct: 1 MLGKEIGISVRELQLILKR-------GKRAKEKMIQANLRLVVAVSKKYQGKGLEFMDLV 53 Query: 406 QEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNR 465 EGN+GL++AV+KFEY +GYKFSTYA WIRQA+ R+I D+ RTIR+PVH+ E I+KL + Sbjct: 54 SEGNLGLIRAVEKFEYDKGYKFSTYAYHWIRQALVRAICDKGRTIRVPVHINEEISKLKK 113 Query: 466 ISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPI-GDDEDSHLGDFIE 524 + ++ Q+ GR T EL+ER+ + +KIR + + +S++ + GD+++S L F+ Sbjct: 114 VQLEIRQKYGRSATVRELSERLEISPEKIRVLRSVNNPMLSLDQKVLGDEDNSTLLSFLA 173 Query: 525 DTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTR 584 D +L + L GL +E +VLR + TL E+GK+ +++R Sbjct: 174 DPNGDL-QKFLDNLGNKELVEQCLCGLKPQEQRVLREYYL--ETPSLTLNEIGKKMNLSR 230 Query: 585 ERIRQIEAKALRKLRH 600 ER+R I+ AL KL+ Sbjct: 231 ERVRHIKNNALDKLKQ 246 >UniRef50_C6Y0F4 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6Y0F4_PEDHD Length = 289 Score = 237 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 85/256 (33%), Positives = 142/256 (55%), Gaps = 3/256 (1%) Query: 343 KLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL 402 L +I + E+ + + G+ + A +++ NLR V+S+AKKY ++GL+ Sbjct: 21 YLSEIGRISLTDPEEEFRLVSAIRNGDQE---ALHRLIKGNLRFVVSVAKKYQDKGLKLG 77 Query: 403 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 462 DLI EGNIGL+KA +F+ RG+KF T+A WW+RQAI ++IA+Q R IR+P + + I++ Sbjct: 78 DLINEGNIGLIKAAHRFDATRGFKFITFAVWWVRQAILQAIAEQRRLIRLPGNQLLGISR 137 Query: 463 LNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDF 522 LN+ ++ Q++ R PT EELA DK+ A S++ I ++ S L + Sbjct: 138 LNQAVLKLEQQLERMPTVEELAVYTGFTVDKVMDYTANAAFTYSLDDVIKEESGSTLMEV 197 Query: 523 IEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDV 582 I D SL + L L+ RE K++ + +G++ +E++ K + Sbjct: 198 IADEATHQTDHFTLAASLSTDLNRALDILSKREQKIIILFYGLNGYPQTAIEDMQKILKL 257 Query: 583 TRERIRQIEAKALRKL 598 ++ERIRQ++ KA + L Sbjct: 258 SKERIRQLKDKAHKTL 273 >UniRef50_Q21UR2 RNA polymerase sigma factor n=5 Tax=Burkholderiales RepID=Q21UR2_RHOFD Length = 350 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 92/281 (32%), Positives = 152/281 (54%), Gaps = 10/281 (3%) Query: 328 EKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLV 387 E L E L+Q+ T T ++ ++ R G+ AR++ M+E NLRLV Sbjct: 61 EALDAAGESGDALTVYLRQVRRTTLFTPQEEFELAGRARAGDFAARQS---MIEHNLRLV 117 Query: 388 ISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA 447 +SIAK Y RG+ LDLI+EGN+GLM A+DKFE RG++FSTYATWWIRQ++ R++ Q Sbjct: 118 VSIAKAYMGRGVPLLDLIEEGNLGLMHAIDKFEPERGFRFSTYATWWIRQSVDRALMCQG 177 Query: 448 RTIRIPVHMIETINKLNRISRQMLQEMGREPT------PEELAERMLMPEDKIRKVLKIA 501 R +R+PV+++ + ++ R R + + + E++A + + +L +A Sbjct: 178 RVVRLPVNVVRELQQVLRARRALESDAAFVVSRPDGIRVEDVAALLGRDPVHVADLLGLA 237 Query: 502 KEPISMETPIGDDEDS-HLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLR 560 + P S++ + ++ GD + D P + + + L+ RE +VL Sbjct: 238 EAPRSLDAALDRSGETQTFGDSLVDEITADPSGVTQVHEVERLLEEWVGTLSEREKEVLE 297 Query: 561 MRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHP 601 RFG+ TL+ + + D+TRER+RQ++ +AL KL+ Sbjct: 298 GRFGLHDREPETLDVLSARLDLTRERVRQVQNEALAKLKRY 338 >UniRef50_Q8L7P7 Sigma factor SigC n=5 Tax=rosids RepID=Q8L7P7_ARATH Length = 291 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 81/240 (33%), Positives = 139/240 (57%), Gaps = 1/240 (0%) Query: 374 RAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW 433 + E+V++ LV+ +A+ Y G+ DLIQ G +G+++ ++F++ RGYKFSTY + Sbjct: 51 YCRDELVKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQY 110 Query: 434 WIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMG-REPTPEELAERMLMPED 492 WIR++++ ++ AR + IP +I TIN + + + + G + EE+A+ Sbjct: 111 WIRKSMSTMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVK 170 Query: 493 KIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLT 552 KIR + K S++ +GD + +F DTT+E P ++ +S R HD+L GL Sbjct: 171 KIRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLE 230 Query: 553 AREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 RE +V+ +R+G+ +LEE+GK V++E IR+IE +A+ KLR +E LR +L+ Sbjct: 231 PREKQVMVLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAMAKLRDQPNAEDLRYYLN 290 >UniRef50_B8BRS7 Plastid RNA polymerase sigma factor (Fragment) n=1 Tax=Thalassiosira pseudonana CCMP1335 RepID=B8BRS7_THAPS Length = 298 Score = 236 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 91/270 (33%), Positives = 150/270 (55%), Gaps = 13/270 (4%) Query: 345 QQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDL 404 Q LT+EQ+ DI + + ++ +++ N+ LV IAK+Y N +L Sbjct: 39 AQWASACSLTVEQLNDIMNK-------GQESRTKLITGNVGLVTLIAKRYYNM---LRNL 88 Query: 405 IQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLN 464 IQEG +G+M+A ++++ +G++FSTY T WIRQ I R+IA+ +R IR+PVH+ TI +N Sbjct: 89 IQEGYMGIMEAAERYDPSKGFRFSTYGTHWIRQRIVRAIAESSRMIRLPVHVQATIRNIN 148 Query: 465 RISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGD---DEDSHLGD 521 + + +GR P+ ELA M + DK+ +++ IS+E + +++ LGD Sbjct: 149 KKHEEFEATIGRSPSLPELAHEMGVSLDKLHLYQHLSRNVISLERAVDQHSPEDNRTLGD 208 Query: 522 FIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFD 581 I T L P + A +E+LR H +L L E VL RFG+D TL+E Sbjct: 209 RIACTELPTPDEDAMSEALRGEVHSMLDALRDNERIVLTHRFGLDDGRPKTLKETAYGMG 268 Query: 582 VTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 ++ + +R +EAKAL +LR P + ++ ++ Sbjct: 269 ISIDSVRAVEAKALNRLRQPQLNYRVKDYV 298 >UniRef50_Q1PZV7 RNA polymerase sigma factor n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZV7_9BACT Length = 256 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 92/248 (37%), Positives = 155/248 (62%), Gaps = 5/248 (2%) Query: 353 LTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL 412 LT E+ +I R+++ G+A+ A++++++ANLRLV+SIAK++ NRG FLDLI+EGN+GL Sbjct: 2 LTFEEELEIARKVAKGDAE---AREKLIKANLRLVVSIAKEFVNRGFSFLDLIEEGNLGL 58 Query: 413 MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQ 472 ++AV+ F+ G +FSTYATWWI+QAI R+IA++AR IRIP +M++ I+++ S +L+ Sbjct: 59 IRAVEDFDITTGNRFSTYATWWIKQAIRRAIANKARIIRIPSYMLQRISQMKHASSGLLK 118 Query: 473 EMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPI--GDDEDSHLGDFIEDTTLEL 530 + R P+ +E+A + + ++ + + S++ P+ G D L D + Sbjct: 119 KHERSPSEQEIAAEIDITAQNVKNIELSLQSMTSLDAPLVSGADIIWALSDITPNGKTLP 178 Query: 531 PLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQI 590 P + + +L L R A V+ MR+G+ TLE++ K ++RER+RQI Sbjct: 179 PEEGLEETYEKETLKKLLDTLDKRAATVITMRYGLVDGESRTLEDISKILKISRERVRQI 238 Query: 591 EAKALRKL 598 E + ++KL Sbjct: 239 EKETIQKL 246 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q87DT7 RNA polymerase sigma factor rpoD n=599 Tax=cellu... 580 e-164 UniRef50_Q1QBP8 RNA polymerase sigma factor n=8 Tax=Gammaproteob... 559 e-157 UniRef50_Q83BB6 RNA polymerase sigma factor rpoD n=106 Tax=Prote... 554 e-156 UniRef50_D1TN62 RNA polymerase sigma factor n=2 Tax=Burkholderia... 536 e-150 UniRef50_P52324 RNA polymerase sigma factor rpoD n=83 Tax=Bacter... 521 e-146 UniRef50_Q13K37 RNA polymerase sigma factor n=1 Tax=Burkholderia... 516 e-144 UniRef50_A9W0B8 RNA polymerase sigma factor n=15 Tax=Alphaproteo... 513 e-143 UniRef50_C6XRI0 RNA polymerase sigma factor n=1 Tax=Hirschia bal... 511 e-143 UniRef50_A0L5T1 RNA polymerase sigma factor n=3 Tax=Bacteria Rep... 504 e-141 UniRef50_P33452 RNA polymerase sigma factor rpoD n=130 Tax=Prote... 498 e-139 UniRef50_P17531 RNA polymerase sigma factor rpoD n=70 Tax=Bacter... 491 e-137 UniRef50_Q0EWY1 RNA polymerase sigma factor n=2 Tax=Bacteria Rep... 486 e-135 UniRef50_D1ASA0 RNA polymerase sigma factor n=9 Tax=Anaplasmatac... 483 e-135 UniRef50_P46400 RNA polymerase sigma factor rpoD n=5 Tax=Alphapr... 483 e-135 UniRef50_D0LP36 RNA polymerase sigma factor n=9 Tax=Bacteria Rep... 477 e-133 UniRef50_Q1RKH7 RNA polymerase sigma factor rpoD n=19 Tax=Bacter... 469 e-130 UniRef50_Q3J9H0 RNA polymerase sigma factor n=2 Tax=Nitrosococcu... 466 e-129 UniRef50_C1F1D9 RNA polymerase sigma factor n=3 Tax=Acidobacteri... 464 e-129 UniRef50_Q5GSP3 RNA polymerase sigma factor n=6 Tax=Wolbachia Re... 461 e-128 UniRef50_C0R506 RNA polymerase sigma factor n=4 Tax=Wolbachia Re... 456 e-126 UniRef50_A9F3S6 RNA polymerase sigma factor n=21 Tax=Bacteria Re... 455 e-126 UniRef50_A8ZUC3 RNA polymerase sigma factor n=10 Tax=Deltaproteo... 455 e-126 UniRef50_C1SK63 RNA polymerase sigma factor n=1 Tax=Denitrovibri... 455 e-126 UniRef50_B0U099 RNA polymerase sigma factor n=18 Tax=Francisella... 454 e-126 UniRef50_P61540 RNA polymerase sigma factor rpoD n=20 Tax=Bacter... 454 e-126 UniRef50_B2V7P9 RNA polymerase sigma factor n=20 Tax=Bacteria Re... 453 e-126 UniRef50_A4JT57 RNA polymerase sigma factor n=14 Tax=Burkholderi... 441 e-122 UniRef50_Q1LEA3 RNA polymerase sigma factor n=1 Tax=Cupriavidus ... 438 e-121 UniRef50_C0A975 RNA polymerase sigma factor n=1 Tax=Opitutaceae ... 427 e-118 UniRef50_B3CQ43 RNA polymerase sigma factor n=2 Tax=Orientia tsu... 426 e-117 UniRef50_C0R030 RNA polymerase sigma factor n=2 Tax=Brachyspira ... 425 e-117 UniRef50_Q2GE94 RNA polymerase sigma factor n=2 Tax=Neorickettsi... 424 e-117 UniRef50_B2UM02 RNA polymerase sigma factor n=7 Tax=Verrucomicro... 423 e-116 UniRef50_Q9Z7F0 RNA polymerase sigma factor rpoD n=15 Tax=Chlamy... 421 e-116 UniRef50_B2KBW8 RNA polymerase sigma factor n=2 Tax=Elusimicrobi... 412 e-113 UniRef50_D2R6R0 RNA polymerase, sigma 70 subunit, RpoD subfamily... 410 e-113 UniRef50_A2WDQ1 RNA polymerase sigma factor n=10 Tax=Proteobacte... 402 e-110 UniRef50_P52323 RNA polymerase sigma factor rpoD n=32 Tax=Borrel... 399 e-109 UniRef50_A6CE36 RNA polymerase sigma factor n=6 Tax=Planctomycet... 395 e-108 UniRef50_Q9ZMY3 RNA polymerase sigma factor rpoD n=59 Tax=Epsilo... 394 e-108 UniRef50_O83506 RNA polymerase sigma factor rpoD n=11 Tax=Bacter... 388 e-106 UniRef50_C8R064 RNA polymerase sigma factor n=1 Tax=Desulfurivib... 387 e-105 UniRef50_D2R2I8 RNA polymerase, sigma 70 subunit, RpoD subfamily... 384 e-105 UniRef50_A6G972 RNA polymerase sigma factor n=2 Tax=Bacteria Rep... 374 e-102 UniRef50_Q1NY91 RNA polymerase sigma factor n=1 Tax=delta proteo... 371 e-101 UniRef50_Q02AX1 RNA polymerase sigma factor n=2 Tax=Acidobacteri... 370 e-101 UniRef50_Q6AQ51 RNA polymerase sigma factor n=1 Tax=Desulfotalea... 370 e-100 UniRef50_A1S281 RNA polymerase sigma factor n=7 Tax=Bacteria Rep... 352 3e-95 UniRef50_UPI0001AF1456 RNA polymerase sigma factor n=2 Tax=Strep... 349 2e-94 UniRef50_P0A603 RNA polymerase sigma factor rpoD n=66 Tax=Actino... 345 2e-93 UniRef50_C4G0D3 RNA polymerase sigma factor n=1 Tax=Abiotrophia ... 345 4e-93 UniRef50_D1C1P9 RNA polymerase sigma factor n=6 Tax=Chloroflexi ... 343 9e-93 UniRef50_B9CNX8 RNA polymerase sigma factor n=3 Tax=Actinobacter... 343 1e-92 UniRef50_Q47RL2 RNA polymerase sigma factor n=3 Tax=Bacteria Rep... 342 2e-92 UniRef50_C7GZY7 RNA polymerase sigma factor n=1 Tax=Eubacterium ... 342 4e-92 UniRef50_A7NGG2 RNA polymerase sigma factor n=15 Tax=Chloroflexi... 341 5e-92 UniRef50_B9L102 RNA polymerase sigma factor n=2 Tax=Bacteria Rep... 338 3e-91 UniRef50_P52328 RNA polymerase sigma factor rpoD n=191 Tax=Bacte... 338 4e-91 UniRef50_Q04506 RNA polymerase sigma factor rpoD n=15 Tax=Bacter... 337 6e-91 UniRef50_P52331 RNA polymerase sigma factor rpoD n=60 Tax=Bacter... 337 8e-91 UniRef50_P0A4J0 RNA polymerase sigma factor rpoD n=39 Tax=Bacter... 337 9e-91 UniRef50_B8FTY1 RNA polymerase sigma factor n=3 Tax=Bacteria Rep... 336 1e-90 UniRef50_Q99TT5 RNA polymerase sigma factor rpoD n=78 Tax=Firmic... 336 2e-90 UniRef50_D2RM33 RNA polymerase, sigma 70 subunit, RpoD subfamily... 335 3e-90 UniRef50_C9KNX0 RNA polymerase sigma factor n=1 Tax=Mitsuokella ... 335 4e-90 UniRef50_C5B6H5 RNA polymerase sigma factor n=1 Tax=Methylobacte... 335 5e-90 UniRef50_Q3AEW8 RNA polymerase sigma factor n=9 Tax=Clostridia R... 334 5e-90 UniRef50_A5IMD4 RNA polymerase sigma factor n=24 Tax=Bacteria Re... 334 6e-90 UniRef50_B0TG57 RNA polymerase sigma factor n=11 Tax=Bacteria Re... 334 7e-90 UniRef50_P77994 RNA polymerase sigma factor rpoD n=6 Tax=Thermot... 333 1e-89 UniRef50_C4LJ07 RNA polymerase sigma factor n=115 Tax=Bacteria R... 333 1e-89 UniRef50_A5UQ16 RNA polymerase sigma factor n=3 Tax=Chloroflexi ... 332 2e-89 UniRef50_P18182 RNA polymerase principal sigma factor hrdA n=6 T... 331 3e-89 UniRef50_D1CB24 RNA polymerase sigma factor n=1 Tax=Thermobaculu... 330 1e-88 UniRef50_C7NC70 RNA polymerase sigma factor n=6 Tax=Bacteria Rep... 328 5e-88 UniRef50_P27785 RNA polymerase sigma factor rpoD n=102 Tax=Bacte... 326 2e-87 UniRef50_B8GCU9 RNA polymerase sigma factor n=5 Tax=Bacteria Rep... 324 5e-87 UniRef50_B4DC14 RNA polymerase sigma factor n=1 Tax=Chthoniobact... 323 1e-86 UniRef50_C8NZE6 RNA polymerase sigma factor n=1 Tax=Erysipelothr... 323 1e-86 UniRef50_A5UPS4 RNA polymerase sigma factor n=4 Tax=Chloroflexac... 323 2e-86 UniRef50_D1VBD5 RNA polymerase sigma factor n=1 Tax=Frankia sp. ... 321 7e-86 UniRef50_Q3AWQ6 RNA polymerase sigma factor n=5 Tax=Chroococcale... 320 8e-86 UniRef50_Q0RDY7 RNA polymerase sigma factor n=5 Tax=Actinomyceta... 320 1e-85 UniRef50_D2ML80 RNA polymerase, sigma 70 subunit, RpoD family n=... 319 2e-85 UniRef50_B1WS32 RNA polymerase sigma factor n=5 Tax=Chroococcale... 319 2e-85 UniRef50_Q2J784 RNA polymerase sigma factor n=6 Tax=Actinomyceta... 317 6e-85 UniRef50_C1E4E8 Predicted protein n=2 Tax=Micromonas RepID=C1E4E... 316 1e-84 UniRef50_C1CW22 RNA polymerase sigma factor n=3 Tax=Deinococci R... 314 7e-84 UniRef50_Q1J156 RNA polymerase sigma factor n=13 Tax=Bacteria Re... 314 7e-84 UniRef50_B7K1V2 RNA polymerase sigma factor n=13 Tax=cellular or... 313 1e-83 UniRef50_A8S2D4 RNA polymerase sigma factor n=2 Tax=Clostridium ... 312 2e-83 UniRef50_Q2JLG8 RNA polymerase sigma factor n=3 Tax=Cyanobacteri... 311 4e-83 UniRef50_B5YKM1 RNA polymerase sigma factor n=1 Tax=Thermodesulf... 311 5e-83 UniRef50_Q1ATP3 RNA polymerase sigma factor n=2 Tax=Rubrobacter ... 311 6e-83 UniRef50_D2AWC8 RNA polymerase sigma factor n=3 Tax=Streptospora... 310 8e-83 UniRef50_C7H329 RNA polymerase sigma factor n=2 Tax=Faecalibacte... 310 1e-82 UniRef50_Q1Q6A4 RNA polymerase sigma factor n=1 Tax=Candidatus K... 309 2e-82 UniRef50_D1J322 Whole genome shotgun sequence of line PN40024, s... 307 6e-82 UniRef50_P74565 RNA polymerase sigma factor rpoD n=23 Tax=cellul... 307 7e-82 UniRef50_P26683 RNA polymerase sigma factor rpoD n=19 Tax=cellul... 307 8e-82 UniRef50_Q7NB90 RNA polymerase sigma factor n=2 Tax=Mycoplasma R... 306 1e-81 UniRef50_A9AU99 RNA polymerase sigma factor n=2 Tax=Chloroflexi ... 306 2e-81 UniRef50_P38023 RNA polymerase sigma factor rpoD1 n=7 Tax=cellul... 305 2e-81 UniRef50_B8LLW6 Putative uncharacterized protein n=2 Tax=Picea s... 305 4e-81 UniRef50_Q8S9C8 RNA polymerase sigma factor n=1 Tax=Cyanophora p... 303 1e-80 UniRef50_A9ESS1 RNA polymerase sigma factor n=1 Tax=Sorangium ce... 303 1e-80 UniRef50_Q6AK94 RNA polymerase sigma factor n=3 Tax=Deltaproteob... 302 3e-80 UniRef50_B5YKU3 RNA polymerase sigma factor n=1 Tax=Thermodesulf... 301 4e-80 UniRef50_A3ZWN2 RNA polymerase sigma factor n=1 Tax=Blastopirell... 301 5e-80 UniRef50_B8HRG7 RNA polymerase sigma factor n=9 Tax=Cyanobacteri... 301 6e-80 UniRef50_C9LM97 RNA polymerase sigma factor n=1 Tax=Dialister in... 300 1e-79 UniRef50_C9XJA1 RNA polymerase sigma factor n=5 Tax=Clostridium ... 299 2e-79 UniRef50_Q39515 Chloroplast RNA polymerase sigma subunit n=1 Tax... 299 2e-79 UniRef50_B8G577 RNA polymerase sigma factor n=4 Tax=Chloroflexus... 298 3e-79 UniRef50_O22455 Sigma factor 2 n=8 Tax=core eudicotyledons RepID... 298 4e-79 UniRef50_B9L1K5 RNA polymerase sigma factor n=1 Tax=Thermomicrob... 296 1e-78 UniRef50_UPI0001C317B8 RNA polymerase, sigma 70 subunit, RpoD su... 296 2e-78 UniRef50_D1CF84 RNA polymerase sigma factor n=2 Tax=Bacteria Rep... 295 3e-78 UniRef50_P43344 RNA polymerase sigma factor rpoD (Fragment) n=31... 295 3e-78 UniRef50_D1IHF7 Whole genome shotgun sequence of line PN40024, s... 294 6e-78 UniRef50_A5JEM2 Chloroplast RNA-polymerase sigma factor (Fragmen... 294 8e-78 UniRef50_B1VAH4 RNA polymerase sigma factor n=5 Tax=Acholeplasma... 293 1e-77 UniRef50_B1AIY8 RNA polymerase sigma factor n=15 Tax=Ureaplasma ... 293 1e-77 UniRef50_B9S0J0 RNA polymerase sigma factor rpoD, putative n=1 T... 293 2e-77 UniRef50_B5Y8E5 RNA polymerase sigma factor n=1 Tax=Coprothermob... 293 2e-77 UniRef50_Q03066 RNA polymerase sigma-C factor n=22 Tax=Cyanobact... 293 2e-77 UniRef50_Q116K5 RNA polymerase sigma factor n=1 Tax=Trichodesmiu... 291 4e-77 UniRef50_Q0SG50 RNA polymerase sigma factor n=1 Tax=Rhodococcus ... 291 4e-77 UniRef50_B5JCN6 RNA polymerase sigma factor n=1 Tax=Verrucomicro... 289 2e-76 UniRef50_B7GEJ9 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 289 2e-76 UniRef50_Q9KHE4 RNA polymerase sigma factor n=14 Tax=Cyanobacter... 288 6e-76 UniRef50_Q31QR8 RNA polymerase sigma factor rpoD4 n=59 Tax=Cyano... 287 1e-75 UniRef50_A0LLA1 RNA polymerase sigma factor n=1 Tax=Syntrophobac... 286 1e-75 UniRef50_B0M9H5 RNA polymerase sigma factor n=1 Tax=Anaerostipes... 286 2e-75 UniRef50_A9BJC9 RNA polymerase sigma factor n=3 Tax=Thermotogace... 286 2e-75 UniRef50_D1C9N7 RNA polymerase sigma factor n=1 Tax=Sphaerobacte... 286 2e-75 UniRef50_B3DXQ3 RNA polymerase sigma factor n=5 Tax=Chlamydiae/V... 286 2e-75 UniRef50_B0RI86 RNA polymerase sigma factor n=2 Tax=Clavibacter ... 285 3e-75 UniRef50_B7K407 RNA polymerase sigma factor n=27 Tax=Cyanobacter... 285 3e-75 UniRef50_B2IZW2 RNA polymerase sigma factor n=14 Tax=Cyanobacter... 285 3e-75 UniRef50_C1SHQ6 RNA polymerase sigma factor n=1 Tax=Denitrovibri... 285 3e-75 UniRef50_Q7U3K5 RNA polymerase sigma factor n=21 Tax=Cyanobacter... 285 4e-75 UniRef50_B2J5S6 RNA polymerase sigma factor n=13 Tax=Cyanobacter... 284 4e-75 UniRef50_Q9LD95 Sigma factor-like protein n=3 Tax=Eukaryota RepI... 284 5e-75 UniRef50_C6X620 RNA polymerase sigma factor RpoD n=68 Tax=Bacter... 284 6e-75 UniRef50_C7M2H3 RNA polymerase sigma factor n=1 Tax=Acidimicrobi... 283 1e-74 UniRef50_Q9ZTL1 RNA polymerase sigma factor n=1 Tax=Cyanidium ca... 283 1e-74 UniRef50_D1J802 RNA polymerase sigma factor n=1 Tax=Mycoplasma h... 283 1e-74 UniRef50_Q2JRK5 RNA polymerase sigma factor n=3 Tax=Cyanobacteri... 283 1e-74 UniRef50_P18184 RNA polymerase principal sigma factor hrdC n=5 T... 283 2e-74 UniRef50_Q601Y8 RNA polymerase sigma factor n=8 Tax=Bacteria Rep... 282 2e-74 UniRef50_P78022 RNA polymerase sigma factor rpoD n=2 Tax=Mycopla... 282 3e-74 UniRef50_UPI00016C4C50 transcription initiation factor sigma 70 ... 281 5e-74 UniRef50_D1CD77 RNA polymerase sigma factor n=1 Tax=Thermobaculu... 281 5e-74 UniRef50_B3PMH4 RNA polymerase sigma-70 factor n=1 Tax=Mycoplasm... 281 6e-74 UniRef50_A8ZNW0 RNA polymerase sigma factor n=1 Tax=Acaryochlori... 280 1e-73 UniRef50_B1ZU80 RNA polymerase sigma factor n=6 Tax=Verrucomicro... 280 1e-73 UniRef50_Q03065 RNA polymerase sigma-B factor n=68 Tax=cellular ... 279 2e-73 UniRef50_B8HIZ1 RNA polymerase sigma factor n=1 Tax=Arthrobacter... 279 2e-73 UniRef50_B8KI17 RNA polymerase sigma factor n=1 Tax=gamma proteo... 279 2e-73 UniRef50_A9B1P1 RNA polymerase sigma factor n=1 Tax=Herpetosipho... 278 5e-73 UniRef50_Q39477 RNA polymerase sigma factor (Fragment) n=1 Tax=C... 278 6e-73 UniRef50_A6G031 RNA polymerase sigma factor n=1 Tax=Plesiocystis... 278 6e-73 UniRef50_D1CDN0 RNA polymerase sigma factor n=1 Tax=Thermobaculu... 277 8e-73 UniRef50_B0N062 Putative uncharacterized protein n=1 Tax=Alistip... 277 1e-72 UniRef50_A6DK04 RNA polymerase sigma factor n=1 Tax=Lentisphaera... 276 2e-72 UniRef50_Q60012 RNA polymerase principal sigma factor hrdD n=27 ... 275 3e-72 UniRef50_B9M4Z2 RNA polymerase sigma factor n=12 Tax=Desulfuromo... 274 7e-72 UniRef50_B3QZV6 RNA polymerase sigma factor n=1 Tax=Candidatus P... 273 1e-71 UniRef50_Q1AV06 RNA polymerase sigma factor n=3 Tax=Rubrobacter ... 273 2e-71 UniRef50_Q8S9C9 RNA polymerase sigma factor n=1 Tax=Cyanophora p... 272 3e-71 UniRef50_A8RNE4 RNA polymerase sigma factor n=1 Tax=Clostridium ... 272 3e-71 UniRef50_B3R1P5 RNA polymerase sigma factor n=78 Tax=Betaproteob... 272 3e-71 UniRef50_D0L243 RNA polymerase sigma factor n=1 Tax=Halothiobaci... 272 4e-71 UniRef50_Q2SRY7 RNA polymerase sigma factor n=5 Tax=Mollicutes R... 272 4e-71 UniRef50_B9ZQZ1 RNA polymerase sigma factor n=1 Tax=Thioalkalivi... 271 7e-71 UniRef50_Q73P62 RNA polymerase sigma factor n=2 Tax=Treponema Re... 271 8e-71 UniRef50_Q7XXT0 Plastid sigma factor 2A n=13 Tax=Poaceae RepID=Q... 271 8e-71 UniRef50_A5IY54 RNA polymerase sigma factor n=2 Tax=Mycoplasma R... 270 8e-71 UniRef50_D1N7J7 RNA polymerase sigma factor n=1 Tax=Victivallis ... 270 9e-71 UniRef50_Q6A8Y3 RNA polymerase principal sigma factor HrdD n=2 T... 270 1e-70 UniRef50_Q3LW61 Sigma 2 transcription factor n=1 Tax=Bigelowiell... 270 1e-70 UniRef50_A4AF82 RNA polymerase sigma factor n=9 Tax=Bacteria Rep... 270 1e-70 UniRef50_Q9ZSL6 Sigma-like factor n=2 Tax=Arabidopsis thaliana R... 269 2e-70 UniRef50_Q0F2K4 RNA polymerase sigma factor n=1 Tax=Mariprofundu... 269 2e-70 UniRef50_B1K0Z2 RNA polymerase sigma factor n=2 Tax=Burkholderia... 269 2e-70 UniRef50_A9G730 RNA polymerase sigma factor n=1 Tax=Sorangium ce... 269 3e-70 UniRef50_D0LRC2 RNA polymerase sigma factor n=1 Tax=Haliangium o... 268 4e-70 UniRef50_B1WQH6 RNA polymerase sigma factor n=5 Tax=Chroococcale... 268 5e-70 UniRef50_B9L491 RNA polymerase sigma factor n=1 Tax=Thermomicrob... 268 6e-70 UniRef50_Q8LK21 Chloroplast RNA polymerase sigma factor, c n=4 T... 267 8e-70 UniRef50_D1A523 RNA polymerase sigma factor n=3 Tax=Actinomyceta... 266 1e-69 UniRef50_A5UVI3 RNA polymerase sigma factor n=1 Tax=Roseiflexus ... 265 3e-69 UniRef50_O24621 Sigma factor 3 n=3 Tax=Brassicaceae RepID=O24621... 265 3e-69 UniRef50_C1SKA7 RNA polymerase sigma factor n=1 Tax=Denitrovibri... 265 4e-69 UniRef50_Q84LK8 Os08g0242800 protein n=5 Tax=Poaceae RepID=Q84LK... 264 5e-69 UniRef50_Q6KI01 RNA polymerase sigma factor n=1 Tax=Mycoplasma m... 264 6e-69 UniRef50_Q1ASS7 RNA polymerase sigma factor n=1 Tax=Rubrobacter ... 264 6e-69 UniRef50_Q9KI19 RNA polymerase sigma factor rpoS n=6 Tax=Coxiell... 264 9e-69 UniRef50_D1HUY6 Whole genome shotgun sequence of line PN40024, s... 264 1e-68 UniRef50_A6GB19 RNA polymerase sigma factor n=1 Tax=Plesiocystis... 263 1e-68 UniRef50_Q2T2N0 RNA polymerase sigma factor n=32 Tax=pseudomalle... 263 1e-68 UniRef50_B7KCK0 RNA polymerase sigma factor n=2 Tax=Cyanothece R... 263 2e-68 UniRef50_A6FX97 RNA polymerase sigma factor n=2 Tax=Plesiocystis... 263 2e-68 UniRef50_A6CZ07 RNA polymerase sigma factor n=1 Tax=Vibrio shilo... 262 2e-68 UniRef50_C1A692 RNA polymerase sigma factor n=1 Tax=Gemmatimonas... 262 3e-68 UniRef50_P35540 RNA polymerase sigma factor rpoS n=502 Tax=Prote... 262 4e-68 UniRef50_Q2S172 RNA polymerase sigma-70 factor n=91 Tax=Bacteroi... 261 4e-68 UniRef50_Q3JAH2 RNA polymerase sigma factor n=2 Tax=Nitrosococcu... 259 2e-67 UniRef50_B4U904 RNA polymerase sigma factor n=5 Tax=Aquificales ... 259 2e-67 UniRef50_Q56VT3 RNA polymerase sigma factor (Fragment) n=1 Tax=H... 259 3e-67 UniRef50_A9ALE2 RNA polymerase sigma factor n=19 Tax=Burkholderi... 259 3e-67 UniRef50_C1DV14 RNA polymerase sigma factor n=1 Tax=Sulfurihydro... 258 4e-67 UniRef50_C4V1Y7 RNA polymerase sigma factor n=1 Tax=Selenomonas ... 258 4e-67 UniRef50_A8Z659 RNA polymerase sigma factor rpoD n=5 Tax=Flavoba... 258 5e-67 UniRef50_C5RI15 RNA polymerase sigma factor n=1 Tax=Clostridium ... 258 7e-67 UniRef50_C0QYD2 RNA polymerase sigma factor n=2 Tax=Brachyspira ... 257 8e-67 UniRef50_Q2JMC5 RNA polymerase sigma factor n=2 Tax=Synechococcu... 257 8e-67 UniRef50_D0Z2H8 RNA polymerase sigma factor n=1 Tax=Photobacteri... 257 9e-67 UniRef50_B2VA41 RNA polymerase sigma factor n=2 Tax=Hydrogenothe... 257 1e-66 UniRef50_Q4A5V6 RNA polymerase sigma factor n=3 Tax=Mycoplasma R... 255 3e-66 UniRef50_Q21TX3 RNA polymerase sigma factor n=1 Tax=Rhodoferax f... 255 3e-66 UniRef50_D0LPW6 RNA polymerase sigma factor n=1 Tax=Haliangium o... 255 4e-66 UniRef50_B8C8Z6 Predicted protein (Fragment) n=1 Tax=Thalassiosi... 254 7e-66 UniRef50_A8L2N7 RNA polymerase, sigma 28 subunit, FliA/WhiG fami... 254 8e-66 UniRef50_Q8L7P7 Sigma factor SigC n=5 Tax=rosids RepID=Q8L7P7_ARATH 253 1e-65 UniRef50_UPI00003842B2 COG0568: DNA-directed RNA polymerase, sig... 253 1e-65 UniRef50_D1V958 RNA polymerase, sigma 28 subunit, Sig B/F/G subf... 252 3e-65 UniRef50_A9SW01 Plastid sigma factor SIG1 n=2 Tax=Physcomitrella... 252 3e-65 UniRef50_A1B3T4 RNA polymerase sigma factor n=2 Tax=Rhodobactera... 251 4e-65 UniRef50_B7FPT1 Predicted protein n=2 Tax=Bacillariophyta RepID=... 251 5e-65 UniRef50_D2R4L7 RNA polymerase, sigma 70 subunit, RpoD subfamily... 251 9e-65 UniRef50_Q1Z2N9 RNA polymerase sigma factor n=9 Tax=Photobacteri... 250 1e-64 UniRef50_B1ZRN1 RNA polymerase sigma factor n=1 Tax=Opitutus ter... 250 1e-64 UniRef50_B7KLN9 RNA polymerase sigma factor n=1 Tax=Cyanothece s... 249 2e-64 UniRef50_A8ZPW9 RNA polymerase sigma-70 factor, putative n=10 Ta... 249 2e-64 UniRef50_C1DVG2 RNA polymerase sigma factor n=4 Tax=Hydrogenothe... 249 3e-64 UniRef50_C7LZN3 RNA polymerase sigma factor n=1 Tax=Acidimicrobi... 248 4e-64 UniRef50_A9GLY8 RNA polymerase sigma factor n=1 Tax=Sorangium ce... 248 5e-64 UniRef50_D1HZ60 Whole genome shotgun sequence of line PN40024, s... 247 1e-63 UniRef50_C6JJT6 RNA polymerase sigma factor n=5 Tax=Fusobacteriu... 246 2e-63 UniRef50_Q47D27 RNA polymerase sigma factor n=1 Tax=Dechloromona... 246 2e-63 UniRef50_A7MZX8 RNA polymerase sigma factor n=1 Tax=Vibrio harve... 246 2e-63 UniRef50_A1TWY8 RNA polymerase, sigma 32 subunit, RpoH n=2 Tax=M... 245 3e-63 UniRef50_Q3AYF6 Possible type II alternative RNA polymerase sigm... 245 3e-63 UniRef50_Q710C2 Sigma factor (Fragment) n=1 Tax=Spinacia olerace... 245 3e-63 UniRef50_B6J9R7 RNA polymerase sigma factor RpoD n=1 Tax=Oligotr... 245 4e-63 UniRef50_Q21UR2 RNA polymerase sigma factor n=5 Tax=Burkholderia... 244 5e-63 UniRef50_C6Y0F4 RNA polymerase sigma factor, sigma-70 family n=1... 243 2e-62 UniRef50_Q9KJT7 RNA polymerase sigma factor n=1 Tax=Peanut witch... 243 2e-62 Sequences not found previously or not previously below threshold: >UniRef50_Q87DT7 RNA polymerase sigma factor rpoD n=599 Tax=cellular organisms RepID=RPOD_XYLFT Length = 618 Score = 580 bits (1494), Expect = e-164, Method: Composition-based stats. Identities = 361/613 (58%), Positives = 441/613 (71%), Gaps = 9/613 (1%) Query: 5 PQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADD 64 QS +K L+++G EQGYLTYAEVNDHLPED+VD DQIEDII MIN MGI+V E APDA+ Sbjct: 8 QQSDIKQLISKGLEQGYLTYAEVNDHLPEDLVDPDQIEDIIGMINGMGIEVHEVAPDAET 67 Query: 65 LMLAE-----NTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDI 119 L+L E D+ AAE AA LS++++E GRTTDPVRMYMREMGTVELLTREGEI I Sbjct: 68 LLLNEGNTGNREVDDTAAEEAAAALSALDTEAGRTTDPVRMYMREMGTVELLTREGEIAI 127 Query: 120 AKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTAT 179 AKRIE+G+++VQ ++ +P + LL +Y+ + + RL++++ GF D E++ ++ Sbjct: 128 AKRIEEGLSEVQAALGAFPLSTELLLSEYELHKEGKRRLTEVVVGFNDLIEEDNSVTSSV 187 Query: 180 HVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKG 239 V E E ++ED++ +D DP + L +Y + G Sbjct: 188 DVTDESIVEV----DEEDDDSVGNDEDAPMIGPDPAEVASRIESLSTEYAKFKKLYAKHG 243 Query: 240 RSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPK 299 H + ++ +F F+L D LV ++ M++ V+ ER ++ L KMP+ Sbjct: 244 PEHKAVIKVREDVAAIFVTFKLSLPLTDLLVQQLQNMVNSVKDHERKVLHLATNVAKMPR 303 Query: 300 KNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVK 359 K+FI + N+T+ W AI + WS L D+ +++ Q +E+ LT+ +K Sbjct: 304 KDFIRSWENNQTNLEWVEDAIKRKQKWSSALRDIKDQITAEQQASIDLEKVNSLTLADIK 363 Query: 360 DINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF 419 +INR M GEAKA +AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV KF Sbjct: 364 EINRMMVYGEAKASKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVCKF 423 Query: 420 EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPT 479 E+RRG+KFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQ+ GRE T Sbjct: 424 EHRRGFKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQQFGREAT 483 Query: 480 PEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTES 539 PEELA+ M MPEDKIRKV+KIAKEPISMETPIGDDEDSHLGDFIED +E P+D+ T + Sbjct: 484 PEELAKEMDMPEDKIRKVMKIAKEPISMETPIGDDEDSHLGDFIEDPNVESPVDTTTNVN 543 Query: 540 LRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLR 599 L +VLAGLT REAKVLRMRFGIDMNTD+TLEEVGKQFDVTRERIRQIEAKALRKLR Sbjct: 544 LSETVREVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 603 Query: 600 HPSRSEVLRSFLD 612 HPSRSE LRSFLD Sbjct: 604 HPSRSEQLRSFLD 616 >UniRef50_Q1QBP8 RNA polymerase sigma factor n=8 Tax=Gammaproteobacteria RepID=Q1QBP8_PSYCK Length = 648 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 366/631 (58%), Positives = 458/631 (72%), Gaps = 21/631 (3%) Query: 4 NPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDAD 63 SQL L+ GKEQGYLTYAEVND LP+ I +SDQIEDI+QM+ D+GI++ E APDAD Sbjct: 17 KSTSQLATLIQMGKEQGYLTYAEVNDQLPDSITESDQIEDIVQMLTDVGIKIFESAPDAD 76 Query: 64 DLMLAENTADEDAAEAAAQVLS-SVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKR 122 D+++ ++++D+D A A + SVE+E GRTTDPVRMYMREMGTV+LLTREGEI IAKR Sbjct: 77 DILMNDDSSDDDMAADEAAAVLASVETEPGRTTDPVRMYMREMGTVDLLTREGEIAIAKR 136 Query: 123 IEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEED--------- 173 IE+GI VQ +++ +P + ++L++Y +V+ E +LSD+ITGF+DP EED Sbjct: 137 IEEGIRDVQHAMSYWPGTVQFVLDEYQKVQDGEKKLSDVITGFLDPETEEDKIAAQEAKE 196 Query: 174 -----------LAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFA 222 + + + DD++ED+E+ ++D+ ++ + IDPE R + Sbjct: 197 AAKEERERIKEEKENPPIIKEKAKVKSGLDDDEEDDEEVEEDAEEETSGIDPEEVRLRLE 256 Query: 223 ELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRT 282 E+ ++ + + GR A A E +L+ F +L + D ++ M + D VR Sbjct: 257 EIEHLFIKAKQALLDYGRGSAQANEAYEQLASRFMMLKLNNRLSDQVMAIMHDVYDDVRK 316 Query: 283 QERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQ 342 ER IM+L + + +MP++ F F NET+ W I ++ L V+++V + Sbjct: 317 HERQIMRLVIRRGRMPREEFRKTFPSNETNVDWLIERIKGKPAFAATLEKVADDVILLQR 376 Query: 343 KLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL 402 ++ E + + I +KD+ RRM+IGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL Sbjct: 377 AIRDYEHKLEMEIHDMKDVARRMAIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL 436 Query: 403 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 462 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK Sbjct: 437 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 496 Query: 463 LNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDF 522 +NR+SRQ+LQEMGREPTPEEL ER+ M E K+RKVLKIAKEPISMETPIGDDEDSHLGDF Sbjct: 497 INRVSRQLLQEMGREPTPEELGERLEMDEAKVRKVLKIAKEPISMETPIGDDEDSHLGDF 556 Query: 523 IEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDV 582 IED T+ P+D AT LR AT DVL LT REA+VL+MRFGIDM TD+TLEEVGKQFDV Sbjct: 557 IEDGTISSPVDDATAAGLREATRDVLGNLTEREARVLKMRFGIDMPTDHTLEEVGKQFDV 616 Query: 583 TRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 TRERIRQIEAKALRKLRHPSRSE LRSFL++ Sbjct: 617 TRERIRQIEAKALRKLRHPSRSEHLRSFLEN 647 >UniRef50_Q83BB6 RNA polymerase sigma factor rpoD n=106 Tax=Proteobacteria RepID=RPOD_COXBU Length = 698 Score = 554 bits (1427), Expect = e-156, Method: Composition-based stats. Identities = 348/602 (57%), Positives = 429/602 (71%), Gaps = 8/602 (1%) Query: 11 LLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLAEN 70 L+ K +GYL + ++ + LP D D Q+E II + +MGI+V E PDAD L+L E+ Sbjct: 102 ALLEEAKNKGYLVHEDLINLLPNDYADPSQMEGIIGRLTEMGIKVFEIPPDADSLLLEED 161 Query: 71 TADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQV 130 T +D + + ++ V + RTTDPVRMYMREMG+VELLTREGEI IAKRIE+GI QV Sbjct: 162 TQSDD--DEINEDVAEVLATETRTTDPVRMYMREMGSVELLTREGEIVIAKRIEEGIRQV 219 Query: 131 QCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDL 190 +V +YPE I +++YD + A E RLSDL+ GF D + Sbjct: 220 MGAVVQYPELIEKFIKEYDTIVATEGRLSDLLIGFFDEEESTASPVAPEAR------DKE 273 Query: 191 DDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEIL 250 + DED+ ++ DP + ++ EL+ Y ++ IK G+ + Sbjct: 274 AETSDEDDGGEGGSDEFGESGPDPLITQQHMEELKKLYGRYQNAIKRYGKKAPATLKHQK 333 Query: 251 KLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNE 310 L+E+F F+L KQF+ L +R M+ R QERLIM CV + K P+K FI F NE Sbjct: 334 ALAELFSTFKLSIKQFNRLTGQLRRMLRAARAQERLIMSYCVVKAKTPRKKFIASFPHNE 393 Query: 311 TSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEA 370 T+ W NK +++L S+E++RA + L Q+EE+ L I+++K+INRR++IGEA Sbjct: 394 TNMKWLEQYKNENKEQAKRLEKYSKEIYRAQRNLAQLEEQNNLNIQEIKEINRRVAIGEA 453 Query: 371 KARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY 430 K+RRAKKEM+EANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY Sbjct: 454 KSRRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY 513 Query: 431 ATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMP 490 ATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQ+LQE G E TPEEL RM MP Sbjct: 514 ATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQILQETGIEATPEELGRRMDMP 573 Query: 491 EDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAG 550 E+K+RKVLKIAKEPISMETPIG+DEDS+LGDFIED +E P+D AT+ L AT ++L+ Sbjct: 574 EEKVRKVLKIAKEPISMETPIGEDEDSNLGDFIEDINMESPVDFATSAGLMEATREILST 633 Query: 551 LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSF 610 LT REAKVLRMRFGIDMNTD+TLEEVGKQFDVTRERIRQIEAKALRKLRHPSR+E L SF Sbjct: 634 LTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRAEKLHSF 693 Query: 611 LD 612 ++ Sbjct: 694 IE 695 >UniRef50_D1TN62 RNA polymerase sigma factor n=2 Tax=Burkholderia sp. CCGE1002 RepID=D1TN62_9BURK Length = 663 Score = 536 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 291/620 (46%), Positives = 401/620 (64%), Gaps = 9/620 (1%) Query: 2 EQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPD 61 ++ Q Q++ L+ GKE+GYLT+AE+NDHLP++ + IE I+ NDMG+ V E+AP Sbjct: 43 DEEQQRQMRALIQLGKERGYLTHAEINDHLPDNFAQTAAIETIVSTFNDMGVAVYEQAPS 102 Query: 62 ADDLMLAENTA----DEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEI 117 A+ L++ + T D+ A E A LSSV+SE GRTTDP RMYMREMG LLTR GEI Sbjct: 103 AEVLLMNDATPATMLDDQADEEAEVALSSVDSEFGRTTDPFRMYMREMGATGLLTRAGEI 162 Query: 118 DIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAE-----E 172 +IAKRIE G++++ ++A P ++ +L ++EA E R+ +L+ G Sbjct: 163 EIAKRIEGGLHEMVQAIAVSPATVSAILLSAKQIEAGELRIDELVDGINAETESVEQSST 222 Query: 173 DLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTR 232 D A + + D+ E E+ S + + FA +R + Sbjct: 223 DFAEEPDTEQATADDDGGGDEHSEIEDRDTARSNEARLKQLTSDSLVIFARVRELFEQIS 282 Query: 233 DTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCV 292 + A+G+ + + R + D L N+++ + +VR ER I+++ V Sbjct: 283 GSQAAQGKGRVARADLREAIQRELAPIRFTARTIDRLCNAVQQQVAQVRAVERHILQIAV 342 Query: 293 EQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETG 352 ++C MP++ F+ F G ET W + A ++ + L + +KL IE + G Sbjct: 343 DRCGMPREKFVESFQGRETDLAWSESTAAASREYGAALERSLPAIQAEQRKLLDIETKVG 402 Query: 353 LTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL 412 L ++Q+K INR+M E+K +AK+EM+EANLRLVISIAKKY NRG+ FLDLIQEGNIGL Sbjct: 403 LPLQQLKKINRQMMAAESKMLQAKREMIEANLRLVISIAKKYVNRGMHFLDLIQEGNIGL 462 Query: 413 MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQ 472 MKAVDKFEYRRG+KFSTYATWW+RQA+TRS+ADQARTIRIPVHM+E+INKLNRISR++LQ Sbjct: 463 MKAVDKFEYRRGWKFSTYATWWVRQAVTRSLADQARTIRIPVHMMESINKLNRISREILQ 522 Query: 473 EMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPL 532 + GRE P LA+RM +PE+K+R +LKI ++P+S+ETP+GD+ D+ L D IED P Sbjct: 523 QTGREAHPAVLAQRMEVPEEKVRAMLKIGRQPLSLETPVGDEADTTLSDVIEDPMATSPA 582 Query: 533 DSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEA 592 D+A +LRAA + L L+ REAKVLRMRFGID +D TLEE+GKQFD+TRERIRQIE+ Sbjct: 583 DAAVQANLRAAINTALDALSPREAKVLRMRFGIDTASDCTLEELGKQFDLTRERIRQIES 642 Query: 593 KALRKLRHPSRSEVLRSFLD 612 KA+RKL HP+R+ LR FLD Sbjct: 643 KAMRKLMHPNRTAKLRPFLD 662 >UniRef50_P52324 RNA polymerase sigma factor rpoD n=83 Tax=Bacteria RepID=RPOD_CAUCR Length = 652 Score = 521 bits (1342), Expect = e-146, Method: Composition-based stats. Identities = 296/629 (47%), Positives = 391/629 (62%), Gaps = 27/629 (4%) Query: 7 SQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLM 66 + +K + + K +GY+T E+N LP + V D IED + M+++MG+ V+E DA++ Sbjct: 27 AGVKKFIKQAKARGYVTMDELNKVLPSEEVSPDAIEDTLAMLSEMGVNVVEAEEDAENAE 86 Query: 67 LAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDG 126 E ++ + S + RT DPVRMY+REMG+VELL+REGEI IAKRIE G Sbjct: 87 GGEVATRDE---NTTVIASDKPAAYDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAG 143 Query: 127 INQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELS 186 + + + E ++ + + L ++I A +A E Sbjct: 144 RDTMIRGLCESALTFEAIMVWREELGTGRILLREVIDLEGTYAAINGVAAQPAAEDDEGP 203 Query: 187 QEDLDDDEDEDEEDGDDDSADDDNSIDPEL-AREKFAELRAQYVVTRDTIKAKGRSHATA 245 E +DD+ E + +G + +DD ELR + D I ++ + Sbjct: 204 AEPVDDEAGEAKAEGAEGEDEDDFDDGAGPTVSAMEGELREGVMAILDAIASEFEAFRKL 263 Query: 246 QEEIL----------------------KLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQ 283 Q++++ + + K +L + + LV + + R+ Sbjct: 264 QDKLVGSRLKGEDLSDADRKAYEGLSATIIQHLKTLKLNNNRIEALVEQLYAINKRLIGL 323 Query: 284 ERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQK 343 E +++L + + + F+ + G+E + TW AM W++ + + S+ V + Sbjct: 324 EGRLLRL-ADSYGISRGEFLKAYFGSELNPTWSEQVKAMGVRWTKFVENDSQSVTDIRSE 382 Query: 344 LQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLD 403 + + ETG+ I+ + I + + GE +AR+AKKEMVEANLRLVISIAKKYTNRGLQFLD Sbjct: 383 IAALATETGVPIDDYRRIVQTVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQFLD 442 Query: 404 LIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKL 463 LIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK+ Sbjct: 443 LIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKI 502 Query: 464 NRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFI 523 R SRQML E+GREPTPEELAE++ MP +K+RKVLKIAKEPIS+ETPIGD+EDSHLGDFI Sbjct: 503 VRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFI 562 Query: 524 EDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVT 583 ED LP+D+A +LR T VLA LT RE +VLRMRFGI MNTD+TLEEVG+QF VT Sbjct: 563 EDKNAILPIDAAIQSNLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVT 622 Query: 584 RERIRQIEAKALRKLRHPSRSEVLRSFLD 612 RERIRQIEAKALRKL+HPSRS LRSFLD Sbjct: 623 RERIRQIEAKALRKLKHPSRSRKLRSFLD 651 >UniRef50_Q13K37 RNA polymerase sigma factor n=1 Tax=Burkholderia xenovorans LB400 RepID=Q13K37_BURXL Length = 628 Score = 516 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 246/619 (39%), Positives = 377/619 (60%), Gaps = 7/619 (1%) Query: 1 MEQNPQS-QLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEA 59 MEQ+ + QL+ L+ GKE+G+LT+ E+ DHLP+ + +D IE I++ ND+GI V + A Sbjct: 9 MEQDSREMQLRALMKLGKERGFLTHTEIVDHLPDCVAQADAIEGIVKAFNDVGIAVRDFA 68 Query: 60 PDADDLMLAENT----ADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREG 115 P D L+L + D+ A + A L+ SE G DP+R Y+REMG LLTREG Sbjct: 69 PTGDALLLGDAAQQSAPDDVAEDETATALTIAISEPGPAADPMRAYLREMGATPLLTREG 128 Query: 116 EIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVD--PNAEED 173 EI +A+RIE + ++ +A P + +L + DRV A E + DL+ GF++ P+ Sbjct: 129 EIAVARRIEACLREMLEVIALRPATVDAILSRADRVAAGELDIDDLVDGFLEQQPDEMLP 188 Query: 174 LAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRD 233 AT G+ S+ D E G ++ + + F+++R Q R Sbjct: 189 AMQGATAEGAAGSKADSGVPTSASESAGAIEADEARIARLTAGCNAIFSQVREQLASWRA 248 Query: 234 TIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVE 293 + + AQ ++ ++ Q R + L +R ++ +R ER +++L V Sbjct: 249 AVAGRTGQREEAQSTLVLIASTLGQIRFSARTIGELSADVRRAVEEIRGIERNVLRLAVN 308 Query: 294 QCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGL 353 Q M + F+ F G+ET W A A S L + +H +KL QIE GL Sbjct: 309 QGGMARDMFVETFVGSETDPEWLARAAAAAPACSAALMRCAPSIHSQQEKLAQIEAREGL 368 Query: 354 TIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLM 413 +++++K I+R+M++ + + + A++ M+EANLRLV+S+AKKY G+ LDL+QEGNIGLM Sbjct: 369 SLQELKWISRKMNVADRELQDARRAMIEANLRLVVSVAKKYVQSGMPLLDLVQEGNIGLM 428 Query: 414 KAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQE 473 KAVD+FEYRRG+KFSTYATWWIRQ+++R+IAD RTIR+PVHM + ++++ R++ +M QE Sbjct: 429 KAVDRFEYRRGFKFSTYATWWIRQSVSRAIADYGRTIRVPVHMADAMHRVKRVAGEMRQE 488 Query: 474 MGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLD 533 GR ELA R+ M E+K+R V ++ ++P+S++ PIG++ D+ LG+ +ED++ PLD Sbjct: 489 TGRPARSSELAARLGMSEEKVRSVQRVTRQPVSLDVPIGEEADTTLGEMVEDSSTLAPLD 548 Query: 534 SATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAK 593 + LR A L LT REAKV+++RFG+D +++TLEE+G QFDVTRER+RQI+ K Sbjct: 549 ALLQADLRVAIDAALGVLTPREAKVIKLRFGVDAVSEHTLEELGDQFDVTRERVRQIQNK 608 Query: 594 ALRKLRHPSRSEVLRSFLD 612 AL+KLRH L+++LD Sbjct: 609 ALQKLRHSDGISTLKNYLD 627 >UniRef50_A9W0B8 RNA polymerase sigma factor n=15 Tax=Alphaproteobacteria RepID=A9W0B8_METEP Length = 718 Score = 513 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 297/640 (46%), Positives = 381/640 (59%), Gaps = 35/640 (5%) Query: 7 SQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLM 66 + +K +V K++GY+TY E+N+ LP+ VD DQIED++ ++DMGI+V+E + Sbjct: 81 AAVKRMVKLAKKRGYVTYEEINEVLPDGQVDGDQIEDVLAQLDDMGIRVVEAEESEEAAP 140 Query: 67 LAEN---------------TADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELL 111 A+ A+ A A + RT DPVRMY+REMG+VELL Sbjct: 141 EAKANGEASEEEESTEGGEVAETSGTRAVAVATPTTREPTDRTDDPVRMYLREMGSVELL 200 Query: 112 TREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAE 171 +REGEI IAKRIE G + + E P ++ D + + L D+I Sbjct: 201 SREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELVDGKVLLRDIIDLEATYAGP 260 Query: 172 EDLAPTATHVGSELSQEDL------DDDEDEDEEDGDDDSADDDNSIDPELAREKFAELR 225 + E+ + +DED+ + + A + I P E F + Sbjct: 261 DARGAPQEAEAEGEESEEAEGAVPPEGGDDEDDMENNVSLAAMEAEIKPR-VLETFDNIA 319 Query: 226 AQYVVTRDTIKAKGR-----------SHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMR 274 + Y R + E + K L + + LV + Sbjct: 320 SNYRKLRKLQNEETELKTGGGTVTSAQTKKQAELKDIVVTDVKSLSLNANRIEALVEQLY 379 Query: 275 VMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKP-WSEKLHDV 333 + R+ + E +M+ E + + F+ + G E W + + W + Sbjct: 380 DINKRLISHEGRLMR-AAEHHGVARDEFLRHYQGYELDPNWMDRVATLGGKGWKNFVERG 438 Query: 334 SEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKK 393 +V +++ + ETGL I + + I + GE +AR+AKKEM+EANLRLVISIAKK Sbjct: 439 GRQVADLREQILTLASETGLQIGEYRKIVAMVQKGEREARQAKKEMIEANLRLVISIAKK 498 Query: 394 YTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIP 453 YTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIP Sbjct: 499 YTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIP 558 Query: 454 VHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGD 513 VHMIETINK+ R SRQML E+GREPTPEELAE++ MP +K+RKVLKIAKEPIS+ETPIGD Sbjct: 559 VHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPIGD 618 Query: 514 DEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTL 573 +EDSHLGDFIED + LP+D+A +LR T VLA LT RE +VLRMRFGI MNTD+TL Sbjct: 619 EEDSHLGDFIEDKNVVLPIDAAIQSNLRETTTRVLASLTPREERVLRMRFGIGMNTDHTL 678 Query: 574 EEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 EEVG+QF VTRERIRQIEAKALRKL+HPSRS LRSFLD+ Sbjct: 679 EEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDN 718 >UniRef50_C6XRI0 RNA polymerase sigma factor n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XRI0_HIRBI Length = 683 Score = 511 bits (1315), Expect = e-143, Method: Composition-based stats. Identities = 297/663 (44%), Positives = 389/663 (58%), Gaps = 54/663 (8%) Query: 3 QNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDA 62 + +K + GK +G++T+ E+N LP D V+ DQIED++ +++MGI V++ + Sbjct: 21 DLSNASVKKFIAAGKARGFITHDELNKVLPSDEVNPDQIEDVMSALSEMGINVVDSDEEG 80 Query: 63 DDLMLAENTADEDAAEAAAQVLSSVESEIGR------TTDPVRMYMREMGTVELLTREGE 116 + ++ E+A+ A + S+ + GR T DPVRMY+REMGTVELL+REGE Sbjct: 81 EGDGDEASSDGENASGAVTKAKSTAAATGGRSDRYDRTDDPVRMYLREMGTVELLSREGE 140 Query: 117 IDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNA-----E 171 I IAKRIE G + + + E P ++ +E E L D+I A Sbjct: 141 IAIAKRIEAGRDAMIRGLCESPLTFEAIMVWRQELEDERVLLRDIIDLEATYAAANGGVP 200 Query: 172 EDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELA-------------- 217 ++ A E ++ + E E++ D+ + Sbjct: 201 DNSAAAVALEKGEPLEKTPEQLEAEEKAKQDEIAKKKRIEEGLPPEEEGKEDDDDDDFDD 260 Query: 218 ------REKFAELRAQYVVTRDTIKAK----------------------GRSHATAQEEI 249 AELR D + ++ + + Sbjct: 261 GGAMSMSAMEAELREGVTDILDNVASEFQAYRRLQEKLVNRHMEGKELSPKDSEEYVKLQ 320 Query: 250 LKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGN 309 + E K+ L + + LV + + R+ E +M+L + +P+K+F+ + G Sbjct: 321 DDIIENLKKLHLNNARIETLVEQLYAINKRLMGLEGGLMRL-ADAHGVPRKSFLDNYFGT 379 Query: 310 ETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGE 369 E W ++ W + + + +V ++ + +E G+ IE + I + GE Sbjct: 380 ELEPDWGTRVSLISAKWKKFIAAETNKVEEMRSEISSLAQEMGVPIEDFRRIVATVQKGE 439 Query: 370 AKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFST 429 +AR AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFST Sbjct: 440 REARVAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFST 499 Query: 430 YATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLM 489 YATWWIRQAITRSIADQARTIRIPVHMIETINK+ R RQML E+GREPTPEELAE++ + Sbjct: 500 YATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTQRQMLHEIGREPTPEELAEKLGL 559 Query: 490 PEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLA 549 P +KIRKVLKIAKEPIS+ETPIGDDEDS+LGDFIED LP+D+A +LR T VLA Sbjct: 560 PLEKIRKVLKIAKEPISLETPIGDDEDSNLGDFIEDKMALLPVDAAIQSNLRETTTRVLA 619 Query: 550 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRS 609 LT RE +VLRMRFGI MNTD+TLEEVG+QF VTRERIRQIEAKALRKL+HPSRS LRS Sbjct: 620 SLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRS 679 Query: 610 FLD 612 FLD Sbjct: 680 FLD 682 >UniRef50_A0L5T1 RNA polymerase sigma factor n=3 Tax=Bacteria RepID=A0L5T1_MAGSM Length = 683 Score = 504 bits (1297), Expect = e-141, Method: Composition-based stats. Identities = 307/675 (45%), Positives = 410/675 (60%), Gaps = 65/675 (9%) Query: 2 EQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPD 61 E + +K L+ RGKE+G+LTY EVND LP D+ ++ +ED++ ++++MGI ++++ + Sbjct: 9 EDTKREDMKKLIARGKERGFLTYDEVNDVLPNDMTSAEDMEDVVGLLDNMGIDLIDDERE 68 Query: 62 ADDLML--------AENTADEDAAEA-------------------AAQVLSSVESEIGRT 94 ++ D+D E + + ++G+T Sbjct: 69 EGARPKSRPAAGIGNLDSLDDDVDEEILGISDFDSEDDESDDEDGLRSDGAIEDIDLGKT 128 Query: 95 TDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAE 154 DPVRMY+REMG+VELLTREGEI IAKRIE+G N+V ++ + P ++ +R+ A Sbjct: 129 DDPVRMYLREMGSVELLTREGEIAIAKRIEEGCNEVIATICDAPSTFNEVMMLAERLRAG 188 Query: 155 EARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDE-------EDGDDDSAD 207 E L +++ + + + + DD++ +++ + + Sbjct: 189 EISLREVLDISTPQDEGSEDEDLNNDDDEVEASTESDDEDVDEDDIVNGPVKVRNPVPEP 248 Query: 208 DDNSIDPELAREKFAE---LRAQYVVTRDTIKAKGRSHA--------------------- 243 + E+A ++ A+ R Y T R + Sbjct: 249 PPVKTEEEIAAQREADNEQFRELYEATLAIFDEITRENEVLVELRDPLNDALQNDPEGET 308 Query: 244 ------TAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKM 297 Q ++ E+ + PKQ D LV ++ + VR QE+ I+ + V QC + Sbjct: 309 CKRLLAEYQAHKARIVEIVAGIKFSPKQRDRLVERIKSYVAAVRAQEQKIITI-VTQCNV 367 Query: 298 PKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQ 357 K FI FTGNE+ TW ++L++ SE + A ++ IEEE G T+ Sbjct: 368 KKPEFIEQFTGNESDTTWIQNFAKTRSAPWKRLYEQSELICEAQLVIRSIEEEAGQTVAD 427 Query: 358 VKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD 417 +K N+++ GE +A +AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD Sbjct: 428 LKKCNKKLMDGERRANQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD 487 Query: 418 KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE 477 KFE+RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKL R SRQM+QEMGRE Sbjct: 488 KFEWRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQMVQEMGRE 547 Query: 478 PTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATT 537 PTPEE+AERM M +K+RKVLKIAKEPIS+ETP+GD+EDSHLGDFIED ++ P + A Sbjct: 548 PTPEEIAERMSMSLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKSMLSPSEHAIM 607 Query: 538 ESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRK 597 +LR T VL LT+RE VLRMRFGI + TD+TLEEVGKQF+VTRERIRQIEAKALRK Sbjct: 608 SNLRDTTGRVLQTLTSREEHVLRMRFGIGLPTDHTLEEVGKQFNVTRERIRQIEAKALRK 667 Query: 598 LRHPSRSEVLRSFLD 612 LRHP+RS LRSFL+ Sbjct: 668 LRHPTRSRKLRSFLE 682 >UniRef50_P33452 RNA polymerase sigma factor rpoD n=130 Tax=Proteobacteria RepID=RPOD_AGRT5 Length = 684 Score = 498 bits (1281), Expect = e-139, Method: Composition-based stats. Identities = 300/660 (45%), Positives = 387/660 (58%), Gaps = 51/660 (7%) Query: 3 QNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDA 62 +K ++ K++GY+T E+N LP + V S+QIED + M++DMGI V+E+ Sbjct: 25 DLSDDAVKKMIKAAKKRGYVTMDELNSVLPSEEVTSEQIEDTMAMLSDMGINVIEDEDAE 84 Query: 63 DDLMLAENTADEDAAEAAAQ---------VLSSVESEIGRTTDPVRMYMREMGTVELLTR 113 + ++ ++ + + + RT DPVRMY+REMG+VELL+R Sbjct: 85 EAAPAEDDGDSDNEESEGGELAPSGGTALATAKKKEPTDRTDDPVRMYLREMGSVELLSR 144 Query: 114 EGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEED 173 EGEI IAKRIE G + + E P L+ D + L ++I + E Sbjct: 145 EGEIAIAKRIEAGRETMISGLCESPLTFQALIIWRDELNEGTTLLREIIDLETTYSGPEA 204 Query: 174 LAPTATHVGSELSQEDLDDDEDEDEED------GDDDSADDDNSIDPEL----------- 216 A ++ + +E E +D + + + PE Sbjct: 205 KAAPQFQSPEKIEADRKAAEEKEKTRRLRAPTGDEDVTDVGGDGLPPEEEEEDDDESNLS 264 Query: 217 AREKFAELRAQYVVTRDTIKAKGRSHATAQEEILK-----------------------LS 253 AELR Q + T DTI + Q++ ++ L Sbjct: 265 LAAMEAELRPQVMETLDTIADTYKKLRKLQDQQVEARLACTGTLSSGQERRYKELKDQLI 324 Query: 254 EVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSD 313 K L + D LV + + R+ E +++L E + + +F+ + G E Sbjct: 325 TAVKSLSLNQNRIDSLVEQLYDISKRLMQNEGRLLRL-AESYGVKRDSFLEQYHGAELDP 383 Query: 314 TWFNAAIAMNKP-WSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKA 372 W + + W E + S + Q++Q + ETG++I + + I + GE +A Sbjct: 384 NWMKSITNLAARGWKEFAREESNTIREIRQEIQNLSTETGISIAEFRRIVSMVQKGEREA 443 Query: 373 RRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT 432 R AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT Sbjct: 444 RIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT 503 Query: 433 WWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPED 492 WWIRQAITRSIADQARTIRIPVHMIETINK+ R SRQML E+GREPTPEELAE++ MP + Sbjct: 504 WWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLE 563 Query: 493 KIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLT 552 K+RKVLKIAKEPIS+ETP+GD+EDSHLGDFIED LP+D+A +LR T VLA LT Sbjct: 564 KVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLT 623 Query: 553 AREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 RE +VLRMRFGI MNTD+TLEEVG+QF VTRERIRQIEAKALRKL+HPSRS LRSFLD Sbjct: 624 PREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD 683 >UniRef50_P17531 RNA polymerase sigma factor rpoD n=70 Tax=Bacteria RepID=RPOD_MYXXA Length = 708 Score = 491 bits (1263), Expect = e-137, Method: Composition-based stats. Identities = 285/609 (46%), Positives = 394/609 (64%), Gaps = 9/609 (1%) Query: 6 QSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADD- 64 + ++K L+ G+E+G+LTY EVND LP DIV SDQI+D++ M D I++++ A + Sbjct: 106 RKEVKDLLAAGREKGFLTYDEVNDALPADIVSSDQIDDVMSMFGDNDIEIVDAQKAAQNN 165 Query: 65 LMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIE 124 + T +E+ +A + G++ DPVR+Y+R+MG+V LLTREGE++IAKRIE Sbjct: 166 EIKPTVTVEEEKEDADEDEKDEDDEPGGKSNDPVRLYLRKMGSVSLLTREGEVEIAKRIE 225 Query: 125 DGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSE 184 DG +V ++ A+ +L+ ++++ + R+ D+I + E VG Sbjct: 226 DGEKEVLRALLACKVAVEEILDIGNKLKTAKLRVRDVIKDAPEETQSEGAEEAPEEVGEG 285 Query: 185 LSQEDLDDDE-DEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHA 243 + L E ++ E+ + D ++ E+ + + V + +K Sbjct: 286 DAPAQLAQSELNKIEQICKQIERFRKFAQDCDVLEEELSSKKKLTEVRKKEVKQ------ 339 Query: 244 TAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFI 303 ++ K+ EV ++ RL KQ D +V +++ +++RV E + L + K Sbjct: 340 EIKDLRTKMMEVLEEMRLNKKQVDRIVINLKALIERVDKAEDELRDLE-RRYDCSMKELR 398 Query: 304 TLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINR 363 + + E+L + +V A++K++++EEE L +E ++ Sbjct: 399 PQLKESRENPNIGKKLQKQLNLTPEQLEVLDRDVRTAVRKIKKVEEEANLPVESLRRNYD 458 Query: 364 RMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRR 423 + +GE +A RAK E+VEANLRLV+SIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY+R Sbjct: 459 AIRLGERRAERAKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYKR 518 Query: 424 GYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEEL 483 GYKFSTYATWWIRQAITR+IADQARTIRIPVHMIETINKL R SR ++QE+GREPTPEE+ Sbjct: 519 GYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQEIGREPTPEEI 578 Query: 484 AERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAA 543 AE+M +P DK+RKVLKIAKEPIS+ETPIG++EDSHLGDFIED +L P D+ +L Sbjct: 579 AEKMELPLDKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKSLVSPADAVINMNLAEQ 638 Query: 544 THDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 603 T VLA LT RE KVLRMRFGI +D+TLEEVG+ F+VTRERIRQIEAKALRKLRHPSR Sbjct: 639 TRKVLATLTPREEKVLRMRFGIGEKSDHTLEEVGQDFEVTRERIRQIEAKALRKLRHPSR 698 Query: 604 SEVLRSFLD 612 S+ LRSF++ Sbjct: 699 SKRLRSFVE 707 >UniRef50_Q0EWY1 RNA polymerase sigma factor n=2 Tax=Bacteria RepID=Q0EWY1_9PROT Length = 660 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 294/644 (45%), Positives = 402/644 (62%), Gaps = 35/644 (5%) Query: 2 EQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPD 61 EQ +L L+ +GK+ G++TY ++N HLP +V +D++E +I + +MG++V++ Sbjct: 7 EQVTIRELGSLMAKGKQAGFITYDDLNKHLPGGLVSADRVEQLINVFTEMGVEVVD-PER 65 Query: 62 ADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAK 121 A A ++A + +S + R DPVRMY+REMGTVELLTREGEI+IA+ Sbjct: 66 APTGAYAMRKDRLRKEDSALRADTSQLGTVIRIDDPVRMYLREMGTVELLTREGEIEIAR 125 Query: 122 RIEDGINQVQCSVAEYPEAITYLLEQYDRVEA---------EEARLSDLITGF------- 165 RIE+G QV ++ P ++ +R+ EE D+I Sbjct: 126 RIEEGRMQVHEAICLCPSTFREIMLLGERIIQIRDEAMELGEEPSFRDIIDVDEKVVNSA 185 Query: 166 --------VDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDP-EL 216 + + E+D P T + Q DG + E Sbjct: 186 AIKEYENRMSRSEEDDDEPVETEPKLDGEQLTEAIKARTATPDGTPMQETVITKEEQLEE 245 Query: 217 AREKFAELRAQ---YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFR---LVPKQFDYLV 270 A F E + ++ + + + A L + + P+Q D LV Sbjct: 246 ALFHFGEAKKLHDDFIEVKKKLAKRPNDKALLLRSREVLDAMLLELVSIPFSPRQLDQLV 305 Query: 271 NSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNK--PWSE 328 + +++VR ER I +E +MP+K F+ F +ET++ W + + NK W Sbjct: 306 QRFKNAVEKVRRFERSIRDYALE-ARMPRKLFLETFPVDETNERWIDELMKQNKDAAWVT 364 Query: 329 KLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVI 388 + +V+ ++ ++L+++E+ET + + ++KD+ R++++GEAK R+AK+EM+EANLRLVI Sbjct: 365 AIEEVTGKIKENQRRLRRVEQETEMGVVELKDVARKLTMGEAKMRQAKREMIEANLRLVI 424 Query: 389 SIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQAR 448 SIAKKYTNRGL FLDLIQEGNIGLMKAV+KFE+RRGYKFSTYATWWIRQAITRSIADQAR Sbjct: 425 SIAKKYTNRGLGFLDLIQEGNIGLMKAVEKFEWRRGYKFSTYATWWIRQAITRSIADQAR 484 Query: 449 TIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISME 508 TIRIPVHMIETINK+ R+SRQ+ QE+GREPTPEELAE + +P +K+ ++L++AKEP+S+E Sbjct: 485 TIRIPVHMIETINKMMRVSRQIAQEIGREPTPEELAEHLELPVEKVLQILEVAKEPVSLE 544 Query: 509 TPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMN 568 TPIGDDEDS LGDF+ED E PLDS +L AT +VL LT RE KVLRMRFGI MN Sbjct: 545 TPIGDDEDSQLGDFVEDDNAENPLDSTIGAALAEATLEVLENLTDREQKVLRMRFGIGMN 604 Query: 569 TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 TD+TLEEVGKQF VTRERIRQIEAKALRKLRHPSRS+ L++F D Sbjct: 605 TDHTLEEVGKQFGVTRERIRQIEAKALRKLRHPSRSQKLKTFAD 648 >UniRef50_D1ASA0 RNA polymerase sigma factor n=9 Tax=Anaplasmataceae RepID=D1ASA0_ANACI Length = 649 Score = 483 bits (1244), Expect = e-135, Method: Composition-based stats. Identities = 249/627 (39%), Positives = 360/627 (57%), Gaps = 33/627 (5%) Query: 5 PQSQLKLLVTRG-KEQGYLTYAEVNDHLPEDIV-DSDQIEDIIQMINDMGIQVMEEAPDA 62 + +K L+T+G K+ G +T+ +++D L +D V S+ I++ I ++ D GI V+E++ + Sbjct: 36 DKELVKNLITKGIKQGGVITFDDISDALSDDDVVSSESIDETISLLQDSGIGVLEQSDEE 95 Query: 63 DDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKR 122 + ++E+AA+ + G+T DP+RMY+ EM +VELL+REGEI+IAKR Sbjct: 96 EADA---AVSEENAAKDEEDESGMRSLDFGQTDDPIRMYLCEMSSVELLSREGEIEIAKR 152 Query: 123 IEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVG 182 I+ + S+ E P + + D + ++ L DLI +D N G Sbjct: 153 IKSEKVNMLRSLIEAPMVLRTFMSWRDDLVNQQVMLRDLID--LDANYRGGAPQQEFEEG 210 Query: 183 SELSQEDLDDDEDEDEE--------------DGDDDSADDDNSIDPELAR---EKFAELR 225 E + ++ D ED D G+ + ++++ P++ Sbjct: 211 EEYGEREMADPEDSDVGHEGSDDDDEGEDASVGNASILEMESALLPKVISILDATIESAE 270 Query: 226 AQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQER 285 + + + E + E+ Q +L + + + + +E Sbjct: 271 KILEMKKRKRDSGKCDEKAYNELHENIWELVSQMKLSDPAVLSVTQQIYNLSKAIAAEEV 330 Query: 286 LIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQ 345 +M L VE + +K+F+ + N + W L + + K++ Sbjct: 331 ALMSL-VESYGVDRKSFLEAYNNNT-----VFEQADASPEWKNLLEKEKKTLTDIQNKVR 384 Query: 346 QIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLI 405 + E + K + ++ E A +AK+EM++ANLRLV+SIAKKY+NRGLQFLDL+ Sbjct: 385 LLSGED--SPGSFKALVAKIQKHERTANKAKQEMIKANLRLVVSIAKKYSNRGLQFLDLV 442 Query: 406 QEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNR 465 QEGNIGLMKAVDKF+Y+RGYKFSTYATWW+RQAITR+IADQARTIRIPVHMIET+NK+NR Sbjct: 443 QEGNIGLMKAVDKFDYKRGYKFSTYATWWVRQAITRAIADQARTIRIPVHMIETVNKINR 502 Query: 466 ISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIED 525 RQML E+GREPT EEL+ R+ M +KIRKV+KI K+P+S+E+PIGDD+ S GD IED Sbjct: 503 TLRQMLHEIGREPTLEELSARLGMNVEKIRKVMKIVKDPVSLESPIGDDDSSTFGDCIED 562 Query: 526 TTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGID-MNTDYTLEEVGKQFDVTR 584 P ++A LR T VL+ LT +E ++LRMRFGI D+TLEEVGK F+VTR Sbjct: 563 KRAVKPENAAVLADLREITTKVLSTLTPKEERILRMRFGIGKGGKDHTLEEVGKLFNVTR 622 Query: 585 ERIRQIEAKALRKLRHPSRSEVLRSFL 611 ERIRQIEAKALRKLRHPSR+ LR F Sbjct: 623 ERIRQIEAKALRKLRHPSRARKLRGFF 649 >UniRef50_P46400 RNA polymerase sigma factor rpoD n=5 Tax=Alphaproteobacteria RepID=RPOD_RHOCA Length = 674 Score = 483 bits (1244), Expect = e-135, Method: Composition-based stats. Identities = 298/654 (45%), Positives = 387/654 (59%), Gaps = 46/654 (7%) Query: 3 QNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDA 62 Q+ +K ++ KE+GY+T ++N +P + V +QIED++ M+++MGI V+E Sbjct: 22 DMSQAAVKRMIGEAKERGYITIDQLNAVMPPETVSGEQIEDVMSMLSEMGINVVEGEEVE 81 Query: 63 DDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKR 122 + + E A + + RT DPVRMY+REMG+VELL+REGEI IAKR Sbjct: 82 ESEGGEVVETGSGSREIAVA--GAAGETLDRTDDPVRMYLREMGSVELLSREGEIAIAKR 139 Query: 123 IEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAP------ 176 IE G N + + E P + D + +EE L D+I D Sbjct: 140 IEAGRNTMIAGLCESPLTFQAITIWRDELLSEEILLRDVIDLEATFGRSLDGDEGMEGME 199 Query: 177 -----------TATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELA----REKF 221 T G+ + DE E + DG+ S D+ D + + Sbjct: 200 GIEGPVVEGLDLETAEGAAPAARRPASDEPEYDADGNPISRIDEEEDDDDSSNMSLAAME 259 Query: 222 AELRAQYVVTRDTIKAKGRSHATAQEEIL----------------KLSEVFKQFRLVPKQ 265 A L+ + + T + I A Q+ + ++ + L+ + Sbjct: 260 AALKPKVLETLELIARDYAKLAEMQDLRMSATLNEDGTFSVAEEAAYQKLRSEIVLLVNE 319 Query: 266 FDYLVNSMRVMMDRVRTQERLIMKL------CVEQCKMPKKNFITLFTGNETSDTWFNAA 319 N + ++D++ R IM + + ++ ++ FI + G E TW + Sbjct: 320 LHLHNNRIEALIDQLYGINRKIMSIDSGMVKLADAARINRREFIDEYRGYELDPTWMDRM 379 Query: 320 -IAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKE 378 + W ++V ++ Q+ + G+ I + + I ++ GE +AR+AKKE Sbjct: 380 SAKPARAWVTLFEKSRDKVEDLRHEMAQVGQYVGVDISEFRRIVNQVQKGEKEARQAKKE 439 Query: 379 MVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQA 438 MVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQA Sbjct: 440 MVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQA 499 Query: 439 ITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVL 498 ITRSIADQARTIRIPVHMIETINKL R RQML E+GREPTPEELAE++ MP +K+RKV+ Sbjct: 500 ITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKVRKVM 559 Query: 499 KIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKV 558 KIAKEPIS+ETPIGD+EDS LGDFIED LPLDSA E+L+ T VLA LT RE +V Sbjct: 560 KIAKEPISLETPIGDEEDSQLGDFIEDKNAILPLDSAIQENLKETTTRVLASLTPREERV 619 Query: 559 LRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 LRMRFGI MNTD+TLEEVG+QF VTRERIRQIEAKALRKL+HPSRS LRSFLD Sbjct: 620 LRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD 673 >UniRef50_D0LP36 RNA polymerase sigma factor n=9 Tax=Bacteria RepID=D0LP36_HALO1 Length = 697 Score = 477 bits (1229), Expect = e-133, Method: Composition-based stats. Identities = 274/615 (44%), Positives = 382/615 (62%), Gaps = 34/615 (5%) Query: 5 PQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVME------- 57 ++ K L+ G+ +G++TY EVNDH+PED++ S+QI+ + + + GI +++ Sbjct: 109 SETLKKKLIELGRSKGFVTYDEVNDHMPEDVISSEQIDSWLSALGEEGIDIVDSAASARK 168 Query: 58 EAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEI 117 +AP DD A + + + + RT+DPVRMY+R+MG+V LLTREGE+ Sbjct: 169 KAPADDDDSSGGKVASLNDDKELEKEEEEEDYSYSRTSDPVRMYLRKMGSVSLLTREGEV 228 Query: 118 DIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPT 177 +IAKRIE+G ++ +V A+ L++ ++ +AR ++I + ++E D Sbjct: 229 EIAKRIEEGERRMLAAVLNSSVAVEELIDLGKQLADGKARAKEIIKDIDEEDSEVDEQWH 288 Query: 178 ATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKA 237 + S +++ ++E I +LA E++ + Sbjct: 289 VDRIQSVIAKVRGRATDNE--------------GIREKLADRTLGEVKKK---------- 324 Query: 238 KGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKM 297 + + Q + E + +L D +V +++ ++ ++ E I + M Sbjct: 325 --KYRDSIQANKEAMFEDLSELQLNKSVVDRMVANLKAIIVKLDRAETEIRAVENRL-GM 381 Query: 298 PKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQ 357 P K + S T + + + A +K++ +EEE ++E+ Sbjct: 382 PAKEIRKTLRDMKASATKTRSVGKRFALTVDDFDAFEAAIKNAQKKIKVLEEECRSSVEE 441 Query: 358 VKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD 417 ++ R MS GE A RAK E+VEANLRLV+SIAKKYTNRGLQFLDLIQEGNIGLMKAVD Sbjct: 442 LRQTFREMSDGERMAERAKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVD 501 Query: 418 KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE 477 KFEY+RGYKFSTYATWWIRQAITR+IADQARTIRIPVHMIETINKL R SR ++QE+GRE Sbjct: 502 KFEYKRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLVRTSRYLVQELGRE 561 Query: 478 PTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATT 537 PTPEE+AERM +P DK+RKVLKIAKEPIS+ETPIG++EDSHLGDFIED ++ P D+ + Sbjct: 562 PTPEEIAERMELPLDKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKSVTSPSDAVIS 621 Query: 538 ESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRK 597 +L T VLA LT RE KVLRMRFGI +D+TLEEVG+ F+VTRERIRQIEAKALRK Sbjct: 622 VNLAEQTRKVLATLTPREEKVLRMRFGIGEKSDHTLEEVGQDFEVTRERIRQIEAKALRK 681 Query: 598 LRHPSRSEVLRSFLD 612 LRHPSRS+ L++F++ Sbjct: 682 LRHPSRSKRLKAFVE 696 >UniRef50_Q1RKH7 RNA polymerase sigma factor rpoD n=19 Tax=Bacteria RepID=RPOD_RICBR Length = 641 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 261/605 (43%), Positives = 368/605 (60%), Gaps = 18/605 (2%) Query: 20 GYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLAENTADEDAAEA 79 G +TY ++N LP D ++I+ ++ ++ + +++ D D + ++ E+ + Sbjct: 24 GSVTYNDINRALP-DGTSVEEIDKVMFRFSEAEVDILDTNED--DAIKIDDMEMEEGFKI 80 Query: 80 AAQ-----VLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSV 134 + + E IG T DPVR+Y+++MG V+LLTRE E++IAKRIE+G + ++ Sbjct: 81 STNIDHEPEDETEEENIGTTDDPVRLYLKDMGGVDLLTRENEVEIAKRIEEGRKTLIAAL 140 Query: 135 AEYPEAITYLLEQY-DRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDD 193 P A+ + Y D V L DLI + +++ + + S+ +E+ D D Sbjct: 141 CRSPIAMDKFRKWYADLVNENNMLLRDLIDLESNMMHDDETSESEDDHNSDHEEEEQDHD 200 Query: 194 EDEDEEDGDDDSADDDNSIDPELAREKFAEL-RAQYVVTRDTIKAK-----GRSHATAQE 247 D +E + + +K A + + T+ + + ++ + Sbjct: 201 HDHEENILSMSKVETQILPNIIERMKKIAFICEELLIETKKSFEKSAGPKILQNSKKYND 260 Query: 248 EILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFT 307 + L + K+ + +++ M + + +E +KL E+ + ++NF+ + Sbjct: 261 NLELLISEVSEIHFNSKRTEEILSEMYRINRDLINKETAFLKL-AEKYGITRQNFLDEYI 319 Query: 308 GNETSDTWFNAAIAMNKP-WSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMS 366 G + W + K W E L S+ + + + +L IE TGL + K + + Sbjct: 320 GAVINAAWKEKMLKNKKAGWKELLTKESDYIDQMIAELSAIEINTGLLVNDFKKLVNAIQ 379 Query: 367 IGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYK 426 E + +AKK+M+EANLRLVISIAKKY NRGLQFLDLIQEGNIGLMKAVDKFEYRRGYK Sbjct: 380 KSERQTLQAKKDMIEANLRLVISIAKKYANRGLQFLDLIQEGNIGLMKAVDKFEYRRGYK 439 Query: 427 FSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAER 486 FSTYATWWIRQAITR+IADQARTIRIPVHMIETINK+ R SRQML E+G EPTP E+A R Sbjct: 440 FSTYATWWIRQAITRAIADQARTIRIPVHMIETINKIIRTSRQMLNELGYEPTPAEIAAR 499 Query: 487 MLMPEDKIRKVLKIAKEPISMETPIGD-DEDSHLGDFIEDTTLELPLDSATTESLRAATH 545 + MP DK+RKV+KIAKEPIS+E P+GD D++S+LGDFIED P+D+A +LR T Sbjct: 500 LSMPIDKVRKVMKIAKEPISLENPVGDGDDNSYLGDFIEDKNAVAPIDAAIQSNLREVTT 559 Query: 546 DVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSE 605 VLA LT RE +VLRMRFGI MNTD+TLEEVG+QF VTRERIRQIE+KALRKL+HP RS+ Sbjct: 560 RVLATLTPREERVLRMRFGIGMNTDHTLEEVGQQFKVTRERIRQIESKALRKLQHPIRSK 619 Query: 606 VLRSF 610 L SF Sbjct: 620 KLNSF 624 >UniRef50_Q3J9H0 RNA polymerase sigma factor n=2 Tax=Nitrosococcus oceani RepID=Q3J9H0_NITOC Length = 579 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 250/611 (40%), Positives = 369/611 (60%), Gaps = 35/611 (5%) Query: 3 QNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDA 62 + Q +LK L+ +GK QG LT E+ D++ +++ DSD+ E + + + + E Sbjct: 4 EMRQEELKRLILKGKAQGLLTEEELQDYIIQEVEDSDEAETMAHLFHHHQ-GLDEFNEAL 62 Query: 63 DDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKR 122 D +L +N+++E+ AE + G +D V YMREMG LLTRE EI +AK Sbjct: 63 DSTLLLKNSSEEEIAETLPTLEG---ESTGAVSDMVYAYMREMGAHALLTREEEITLAKA 119 Query: 123 IEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVG 182 IE G++Q ++ P A+ L+ + V + RL D +TGF Sbjct: 120 IETGLSQSTEALGNCPAAVAELVRWAEEVATGKGRLKDWLTGFT---------------- 163 Query: 183 SELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSH 242 E + ++ D E + + +R Y T+ +G + Sbjct: 164 ---------------EPEIEETEIKDGKESSLEATSKHLSRVRTLYGNLEATLAQEGVAS 208 Query: 243 ATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNF 302 A+E KL+ F+ RL+P + + L ++ + + +TQE++I C+ Q +M +++F Sbjct: 209 PRARELRRKLAREFQFLRLIPSRINQLTQLVQGWISKAQTQEQIIRSCCIHQGEMSQEDF 268 Query: 303 ITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDIN 362 F+ T W + +A ++ + L ++ + A L Q+E E GL ++++K I+ Sbjct: 269 WHNFSSGTTHPQWLDDLLAHSRIDRQGLQTQAKTLRAAQAVLLQVEVEAGLPLDELKAIH 328 Query: 363 RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR 422 +R+ + +A+RAK +MVEANLRLV+S+AKKY NRGL FLDLIQEGNIGLMKAVDKF+Y Sbjct: 329 QRLVRSQFQAQRAKAQMVEANLRLVVSVAKKYRNRGLTFLDLIQEGNIGLMKAVDKFDYH 388 Query: 423 RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEE 482 RGYKFSTYA WWIRQAITR+I DQ+RTIRIPVH++E ++KLNR S Q+ QE GRE PEE Sbjct: 389 RGYKFSTYAHWWIRQAITRAIDDQSRTIRIPVHVMEKLSKLNRASYQLRQEKGREGRPEE 448 Query: 483 LAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRA 542 LAER+ + E +I ++ +IAK+PIS+ETP+G DEDS LG+ +ED + P++ A T L+ Sbjct: 449 LAERLALSEQQIHRMHEIAKQPISLETPLGKDEDSQLGELMEDEQVPNPMEVAITAGLQT 508 Query: 543 ATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 602 +LA L+ REA+V+ MRFGI M+TD+TL EV +QFD++RERIRQIEA+AL KLR Sbjct: 509 GAQQLLAALSPREAQVVAMRFGIGMDTDHTLGEVAQQFDLSRERIRQIEAQALGKLRRLG 568 Query: 603 RSEVLRSFLDD 613 S+ LR+FL+D Sbjct: 569 HSKALRNFLED 579 >UniRef50_C1F1D9 RNA polymerase sigma factor n=3 Tax=Acidobacteria RepID=C1F1D9_ACIC5 Length = 597 Score = 464 bits (1193), Expect = e-129, Method: Composition-based stats. Identities = 258/613 (42%), Positives = 364/613 (59%), Gaps = 60/613 (9%) Query: 1 MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP 60 ++ + L+ L+ GKE+GYLTY EVND +P D+ + ++D++ I GI ++E +P Sbjct: 41 LDDKYEEDLQKLIDAGKEKGYLTYNEVNDLIPGDMTSPEDLDDLMTTIGTQGIDILEGSP 100 Query: 61 DADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA 120 + + +D+ + L T DPVRMY+REMGTV LLTREGE++IA Sbjct: 101 KLGNDGFDDEDSDDVELDLTPGTLEK-------TNDPVRMYLREMGTVPLLTREGEVEIA 153 Query: 121 KRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATH 180 KRIE G +V +V+ P I ++ + + + +++ Sbjct: 154 KRIERGQLRVMKAVSRSPIVIREIIALGEDLRRGVRSVKEVVI----------------- 196 Query: 181 VGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGR 240 D++E +E + ++K L + + +K + + Sbjct: 197 ---------FDEEEITEEVLAARVRQTANKIDGIVKHQKKIQALEEKMQAAKSKVKEQRK 247 Query: 241 SHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKK 300 E++ ++ + + + ++ L++ + +D +RT ER I L + + + Sbjct: 248 LRWLIAREMVFITRIVRDLKYTNQERKRLLDKVNKTVDSMRTLERQIRSLDQKYDQSKSE 307 Query: 301 NFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKD 360 + + L+++EEE GL+I +K Sbjct: 308 ELKK---------------------------EYRRQQKNCKTDLEKLEEEAGLSIADLKR 340 Query: 361 INRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE 420 R + G+ A +AK+E++EANLRLV+SIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE Sbjct: 341 TQREIIQGDMDAEQAKRELIEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE 400 Query: 421 YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTP 480 YRRGYKFSTYATWWIRQAITR+IADQARTIRIPVHMIETINKL R SRQ++QE+GREPT Sbjct: 401 YRRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRQLVQELGREPTS 460 Query: 481 EELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESL 540 EE+A RM +P K+RKVLKIA+EPIS+ETPIG++EDSHLGDFIED+ P ++ + +L Sbjct: 461 EEIARRMDIPVAKVRKVLKIAQEPISLETPIGEEEDSHLGDFIEDSQAVSPSEAVISVNL 520 Query: 541 RAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 600 + T VL LT RE +V++MRFG++ +++TLEEVG+ F VTRERIRQIEAKALRKLRH Sbjct: 521 KEYTSQVLRTLTPREERVIKMRFGLEDGSEHTLEEVGQSFQVTRERIRQIEAKALRKLRH 580 Query: 601 PSRSEVLRSFLDD 613 PSRS LR+F+D+ Sbjct: 581 PSRSRKLRAFVDN 593 >UniRef50_Q5GSP3 RNA polymerase sigma factor n=6 Tax=Wolbachia RepID=Q5GSP3_WOLTR Length = 649 Score = 461 bits (1187), Expect = e-128, Method: Composition-based stats. Identities = 209/650 (32%), Positives = 359/650 (55%), Gaps = 47/650 (7%) Query: 2 EQNPQSQLKLLVTRG-KEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP 60 ++ + ++ LVT+ K+ G++T+ ++ND L ++ + SD I+D I ++ D GI ++E + Sbjct: 7 SEDKKKIIRDLVTKSIKKGGFITFDDINDKLSDENLSSDFIDDTISLLQDSGINILESSE 66 Query: 61 DADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA 120 D ++ + + LS+ + + + DPVR+Y+++M +V+LL+R EI+IA Sbjct: 67 DEEEAPSNSDD----SKLDDDDALSNTTTTLVQNDDPVRVYLQDMSSVKLLSRTDEIEIA 122 Query: 121 KRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATH 180 K+IE + + ++ E + + D + + L ++I N++ + P Sbjct: 123 KKIESEKHNMLRAIIETSVTLKMIKAWRDDLSSGSLLLREIIDLDAIYNSDFNAIPKEES 182 Query: 181 VGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAR----------------EKFAEL 224 S +D ++ + ++D + + D+ + E +L Sbjct: 183 EESIEDDKDSENVSEGTKDDEYCEDDEIDSKKGNDEKENSNEDINSANLNVSILEMENDL 242 Query: 225 RAQYVVTRDTIKAKGRSHATAQE----------EILKLSEVFKQFRLVPKQFDYLVNSMR 274 + +V D I T ++ ++ + Q +L + + Sbjct: 243 LPKVIVALDEIITLADEALTLRKDPSGGLRYQNLYDQIWSIVLQIKLSDTAVAKITQKLY 302 Query: 275 VMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGN------------ETSDTWFNAAIAM 322 + + +E ++ ++ + +++F+ ++ ++S+ F + Sbjct: 303 NINRSIMLEEANLIS-EAKKYNIDRESFLKVYADVLLRYKLEEISSLKSSENQFCFTGEL 361 Query: 323 NKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEA 382 + + + D E + L ++Q +E +++ K++ +R E + AK+ M++A Sbjct: 362 KNKFVKFIDDNFEHIADTLNNIKQHIQEDN--VQEFKELIKRTQKHEREVSEAKQGMIKA 419 Query: 383 NLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRS 442 NLRLV+SIAKKY+NRGL LDLIQEGNIGLMKAVDKF+Y+RGYKFSTY TWW+RQ+ITR+ Sbjct: 420 NLRLVVSIAKKYSNRGLALLDLIQEGNIGLMKAVDKFDYKRGYKFSTYGTWWVRQSITRA 479 Query: 443 IADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAK 502 I +Q++ +RIPVHM+E I+K+NR R++ EMGREPT EEL+ + MP ++IRKV+KIA+ Sbjct: 480 IPEQSKVVRIPVHMVEIISKINRALRKLTHEMGREPTLEELSMELGMPLERIRKVMKIAR 539 Query: 503 EPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMR 562 +P+S++ P G D+ S GD IED + P D+A LR T ++LA LT +E +++RMR Sbjct: 540 DPVSLDAPTGKDDSSTFGDCIEDKRVSKPEDAAILTDLRCITTNLLATLTPKEERIIRMR 599 Query: 563 FGID-MNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 FG+ ++TLEE+G F VTRERIRQ+E+KALRKL+HP R+ LR F Sbjct: 600 FGLGKDCKEHTLEEIGCIFKVTRERIRQVESKALRKLKHPCRARKLRGFF 649 >UniRef50_C0R506 RNA polymerase sigma factor n=4 Tax=Wolbachia RepID=C0R506_WOLWR Length = 650 Score = 456 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 226/650 (34%), Positives = 361/650 (55%), Gaps = 48/650 (7%) Query: 3 QNPQSQLKLLVTRG-KEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPD 61 ++ + +K LVT+ K+ G++T+ ++ND L ++ SD I+D I ++ D GI V+E + D Sbjct: 8 EDKKKIIKDLVTKSIKKGGFITFDDINDKLSDENFSSDFIDDAISLLQDSGINVLESSED 67 Query: 62 ADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAK 121 +D+ + + D + + V + + + DPVR+Y+++M +V+LL+R EI+IAK Sbjct: 68 EEDIPSNSDDSKLDDDDTSPN----VTATLVQNDDPVRIYLQDMSSVKLLSRADEIEIAK 123 Query: 122 RIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHV 181 +IE + + ++ E + + D + L ++I N++ ++ P Sbjct: 124 KIESEKHNMLRAIIETSVTLKVIKVWRDDLSNGALLLREIIDLDAIYNSDFNVVPKEESE 183 Query: 182 GSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPEL----------------AREKFAELR 225 SE S ED++D ED E+ + D+ + E ++L Sbjct: 184 ESEESAEDVEDSEDVSEDAEYCSDDEKDSKKSDDEKDGNNEDISSVNLNVSILEMESDLL 243 Query: 226 AQYVVTRDTIKAKGRSHATAQEEILKLSEVF-----------KQFRLVPKQFDYLVNSMR 274 + +V D I ++ S Q +L + + Sbjct: 244 PKVIVALDEIITLTNEALILRKNSKNFSNELENLYNQIWSIALQIKLSDAAVARITQELY 303 Query: 275 VMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGN------------ETSDTWFNAAIAM 322 + + +E ++ + + +++F ++ + ++ + + Sbjct: 304 KINRSITLEEANLIA-EARKYDIDRESFYKVYDDVLLKHELKKISLLKINENQSSFTGEL 362 Query: 323 NKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEA 382 + + D SE + L ++Q +E +++ K++ +R+ E + AK+EM++A Sbjct: 363 KNKFLRFIDDNSEHIASTLNGIKQHIQEDN--VQEFKELIKRIQKHEREVSEAKQEMIKA 420 Query: 383 NLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRS 442 NLRLV+SIAKKY+ RGL LDLIQEGNIGLMKAVDKF+Y+RGYKFSTY TWW+RQ+ITR+ Sbjct: 421 NLRLVVSIAKKYSKRGLDLLDLIQEGNIGLMKAVDKFDYKRGYKFSTYGTWWVRQSITRA 480 Query: 443 IADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAK 502 I +Q++ +RIPVHM+E I+K+NR R+M EMGREPT EEL+ + MP ++IRKV+KIA+ Sbjct: 481 IPEQSKVVRIPVHMVEIISKINRALRKMTHEMGREPTLEELSVELTMPLERIRKVMKIAR 540 Query: 503 EPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMR 562 +P+S+E P G D+ S GD IED + P D+A LR T +VLA LT +E ++LRMR Sbjct: 541 DPVSLEAPTGKDDSSTFGDCIEDKRVSRPEDAAILADLRGITTNVLATLTPKEERILRMR 600 Query: 563 FGID-MNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 FG+ ++TLEEVGK F+VTRERIRQIEAKALRKL+HPSR+ LR F Sbjct: 601 FGLGKDGKEHTLEEVGKIFNVTRERIRQIEAKALRKLKHPSRARKLRGFF 650 >UniRef50_A9F3S6 RNA polymerase sigma factor n=21 Tax=Bacteria RepID=A9F3S6_SORC5 Length = 639 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 269/613 (43%), Positives = 372/613 (60%), Gaps = 31/613 (5%) Query: 2 EQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPD 61 + + L+ LV GK +G+LTY EVND LP D+ DQ++D++ + D I++++ A Sbjct: 55 SEKDRKTLEKLVETGKSKGFLTYDEVNDALPADVA-PDQLDDVVGALGDEDIEIVDGATQ 113 Query: 62 ADDLML--AENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDI 119 A+ A E ++ DPVRMY+R+MG+V LLTREGE++I Sbjct: 114 VKIAPKRIADEEAGEKKLVVTPDREEEDVDYYSKSNDPVRMYLRKMGSVSLLTREGEVEI 173 Query: 120 AKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTAT 179 AKRIE G +V ++ + P A+ +++ +++ + R+ +LI Sbjct: 174 AKRIEIGEQKVNAAILDSPIAVREIIDLGEKLRKHKIRVKELI----------------- 216 Query: 180 HVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKG 239 +++D++ ++ + D + +K AEL + + ++ K Sbjct: 217 ---------KDAENDDQEFDEEEADRRIIRLIDKVKRVDKKKAELLEERKEVKTEVRRKQ 267 Query: 240 RSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPK 299 Q +L ++ RL + D +V ++ ++ +V E +L + + K Sbjct: 268 IDVEVTQ-ATAELVTTLEEMRLNKRTIDKIVQKLKSLISKVEKAEAGATELE-RRTGLSK 325 Query: 300 KNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVK 359 + + E+L+D + A + L+++EEE + + ++ Sbjct: 326 GELKRELIKVKGNRALEGRLAKKLNVQREELNDFESTIKNAQKGLKKVEEELNIDVAAIR 385 Query: 360 DINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF 419 D + GE A RAK E+VEANLRLV+SIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF Sbjct: 386 DTYENIREGERMAERAKAELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF 445 Query: 420 EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPT 479 EY+RGYKFSTYATWWIRQAITR+IADQARTIRIPVHMIETINKL R SR ++QE GREPT Sbjct: 446 EYKRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQEYGREPT 505 Query: 480 PEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTES 539 PEE+AE+M +P DK+RKVLKIAKEPIS+ETPIG++EDSHLGDFIED ++ P ++ + Sbjct: 506 PEEIAEKMELPLDKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKSVISPAEAVINMN 565 Query: 540 LRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLR 599 L T VL LT RE KVLRMRFGI +D+TLEEVG+ F+VTRERIRQIEAKALRKLR Sbjct: 566 LAEQTRKVLKTLTPREEKVLRMRFGIGEKSDHTLEEVGQDFEVTRERIRQIEAKALRKLR 625 Query: 600 HPSRSEVLRSFLD 612 HPSRS+ L+SF+D Sbjct: 626 HPSRSKQLKSFID 638 >UniRef50_A8ZUC3 RNA polymerase sigma factor n=10 Tax=Deltaproteobacteria RepID=A8ZUC3_DESOH Length = 738 Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 244/611 (39%), Positives = 353/611 (57%), Gaps = 35/611 (5%) Query: 3 QNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDA 62 QN + +L L+ +GK+QG LTY E+ + + + +DQ++D++ ++D+ I V+++A A Sbjct: 161 QNFKQKLSGLIAKGKKQGELTYEEIAKAIEANDIPTDQMDDLLVHLDDLDISVVKKADQA 220 Query: 63 DDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKR 122 DD + + +S+ G TD V+MY+REMG V LL+REGE++IAK+ Sbjct: 221 DDSGEDGAKSTTRGD-----SPVTYDSDPGSVTDTVKMYLREMGLVTLLSREGEVEIAKK 275 Query: 123 IEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVG 182 IE G + + + + ++ D ++ R ++ + +A E+ Sbjct: 276 IEAGEQEALRGMLDTAVGVESIIAYGDNIDVGNLRPKSVLKDVDEGDAGEEEILRIDAFA 335 Query: 183 SELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSH 242 + + Q D LR +++ + + Sbjct: 336 ATIRQIKALD--------------------------ATIQPLRQKHLSVSLSATERKTVA 369 Query: 243 ATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI-MKLCVEQCKMPKKN 301 + ++ E+ +RL + D + ++ + T E+ I +L Sbjct: 370 EQLTRKTDEIFELLLPWRLESEVLDAMEERIQDEIKWFDTMEQTIDRRLAGLGAGGAVST 429 Query: 302 FITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDI 361 + W + K L +E+ ++++ E ++ Sbjct: 430 IRSKMKTKTGFVNWAYPRMQTTKVH---LAAFYDEIKSLERQMEIRERAIMADRRLLRKT 486 Query: 362 NRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY 421 +++ G +A+ +K E++ ANLRLV+SIAKKYTNRGLQFLDLIQEGN+GLMKAVDKFEY Sbjct: 487 MKKIDDGYLRAKASKSELIRANLRLVVSIAKKYTNRGLQFLDLIQEGNVGLMKAVDKFEY 546 Query: 422 RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPE 481 RRGYKFSTYATWWIRQAITR+IADQARTIRIPVHMIETINKL R SR ++QE G EP+PE Sbjct: 547 RRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQERGYEPSPE 606 Query: 482 ELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLR 541 E+AE+M +P +K+R+VLKIA+EPIS+ETPIG++EDSHLGDFIED +P ++A + +L Sbjct: 607 EIAEKMEIPLEKVRRVLKIAREPISLETPIGEEEDSHLGDFIEDKKFMIPSEAAVSMNLS 666 Query: 542 AATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHP 601 T VLA LT RE KVLRMRFGI D+TLEEVG+ F VTRERIRQIEAKALRKLRHP Sbjct: 667 EQTRKVLATLTPREEKVLRMRFGIGEKADHTLEEVGRDFAVTRERIRQIEAKALRKLRHP 726 Query: 602 SRSEVLRSFLD 612 +RS++L+ F++ Sbjct: 727 TRSKMLKHFIE 737 >UniRef50_C1SK63 RNA polymerase sigma factor n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SK63_9BACT Length = 626 Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 246/626 (39%), Positives = 376/626 (60%), Gaps = 31/626 (4%) Query: 8 QLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLML 67 ++K ++ GKE+G+LT+ E+N++LP+DI+ ++ I++I+ ++ + I V++ D L Sbjct: 11 EVKSIIALGKEKGFLTFDEINENLPDDILSTELIDEIMMLLAQLKIDVIDSKVDKPGLYS 70 Query: 68 AENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGI 127 A++ + + L E T DPVR+Y++EMG + LL RE EI++AK IE+G Sbjct: 71 ADDDD----DDEDSISLLKEVEESISTDDPVRLYLKEMGNIALLNREEEIEVAKEIEEGQ 126 Query: 128 NQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQ 187 +V +V YP +++ + + RL D+I +AE D + Sbjct: 127 RKVVRAVLLYPNTAMKIMDIARNIRNDSMRLKDIIDIDDGSDAENDDLDAVENENENEEN 186 Query: 188 EDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQE 247 + + E + + + +LA E+ +++ Q++ + I K + + Sbjct: 187 AAEQPEIKQPEPVKTLEEIAAEVEAEQQLAEEREEQIKVQFIEILEDIADKLHKNIDLND 246 Query: 248 EILK---------------------LSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERL 286 +I + +++ + ++ + + N ++ + + + Sbjct: 247 KIKENKCSIDEMLNIKFKMHETVDDITDKLLEIKVNYSKICLIANEIKDAHQAIYDRSKD 306 Query: 287 IMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQ 346 I K+C + ++ + E T M P E + ++ + L + Sbjct: 307 IDKICKL---IRYTDYTDAVSVTEDELTRACENRGMALPDYEIIVKKYKKAKKGLD---E 360 Query: 347 IEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQ 406 G ++ I+ + +GE + +AK +++EANLRLV+SIAKKYTNRGLQFLDLIQ Sbjct: 361 CINSLGFDKAELDVIHDSLLMGENETEKAKSKLIEANLRLVVSIAKKYTNRGLQFLDLIQ 420 Query: 407 EGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRI 466 EGNIGLMKAV+KFEY+RGYKFSTYATWWIRQAITR+IADQARTIRIPVHMIETINK+ +I Sbjct: 421 EGNIGLMKAVEKFEYKRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKMMKI 480 Query: 467 SRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDT 526 +RQ+ Q+MGREPTPEE++ +M +P +KI+KV+KIAKEP+S+ETPIG+DEDS LGDFIED Sbjct: 481 TRQLQQDMGREPTPEEISSKMDIPVEKIKKVMKIAKEPVSLETPIGEDEDSSLGDFIEDK 540 Query: 527 TLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRER 586 + + P + T L+ T +L L+ REA VL++RFGI+ ++D+TLEEVGKQF+VTRER Sbjct: 541 SAKNPSEEVTYLKLKEHTKQILETLSHREASVLKLRFGIECDSDHTLEEVGKQFNVTRER 600 Query: 587 IRQIEAKALRKLRHPSRSEVLRSFLD 612 IRQIEAKALRKLRHP+RS +L++F + Sbjct: 601 IRQIEAKALRKLRHPTRSRILKTFTE 626 >UniRef50_B0U099 RNA polymerase sigma factor n=18 Tax=Francisella RepID=B0U099_FRAP2 Length = 578 Score = 454 bits (1169), Expect = e-126, Method: Composition-based stats. Identities = 276/612 (45%), Positives = 385/612 (62%), Gaps = 40/612 (6%) Query: 3 QNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDI-VDSDQIEDIIQMINDMGIQVMEEAPD 61 ++ S LK L+ GKE+GYLT A++ D LP D+ D + E+I ++ D GI V + P+ Sbjct: 4 EDLLSDLKDLMVDGKERGYLTRADILDALPGDVSEDPKKYEEIEAILIDAGIDVYDRTPE 63 Query: 62 ADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAK 121 ++ + ++++ G+T+DP+RMYMREMG V+LL ++GE DIA Sbjct: 64 L-----------DEDDDERKVSEANLDDLKGKTSDPIRMYMREMGIVDLLDKKGETDIAI 112 Query: 122 RIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHV 181 RIE+G +V ++ YP + +E++ +E + + E++ P A ++ Sbjct: 113 RIEEGTTEVFSTILSYPIVVKTYIERFRELEE------KAVDYMTSQDIEDE--PVAKYI 164 Query: 182 GSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRS 241 D++ +E+ +DD + ID + A E F L + ++ Sbjct: 165 RFNEIMAGFSDEQVTEEKVAEDDHDE---KIDTQRAYEFFVNLEKMFEEYQEKPNK---- 217 Query: 242 HATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKN 301 + K+ + F+ RL LV+ +R+ RV+ ER I++LCVE+ K P++ Sbjct: 218 -----KLYSKIVKEFECLRLSTSHLQKLVDYIRLPYARVKEFERKILRLCVERSKTPRQE 272 Query: 302 FITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDI 361 FI ++ S W + K + +E+H +++ Q + + IE++K + Sbjct: 273 FIKVYEI--GSIEWLPSLTKKYKFT----DNTVKEIHNLTKQINQFQNLMMMKIEELKKV 326 Query: 362 NRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY 421 N +S EAK +AKKEM+EANLRLV+S AKKYTNRGL FLD+IQEGNIGLMKAVDKF+Y Sbjct: 327 NVEISKSEAKITQAKKEMIEANLRLVVSEAKKYTNRGLHFLDIIQEGNIGLMKAVDKFDY 386 Query: 422 RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPE 481 R+G+KFSTYATWWIRQAITRSIADQARTIR+PVHMIETINK+NRI RQ+LQE GRE T E Sbjct: 387 RKGFKFSTYATWWIRQAITRSIADQARTIRVPVHMIETINKVNRIKRQILQEKGREATEE 446 Query: 482 ELAERM-LMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESL 540 E+ E M +DK++K+L I+ PISME+PIGDDEDS +GDFIED P+++A E+L Sbjct: 447 EIIEYTPNMTKDKLKKILNISHTPISMESPIGDDEDSTVGDFIEDKNNYSPIEAANLENL 506 Query: 541 RAATHDVLAG-LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLR 599 R A +++ LT REAKVL MRFGI MNTD+TLEEVGKQF+VTRERIRQIEAKALRKL+ Sbjct: 507 REAIKELIDTGLTEREAKVLMMRFGIGMNTDHTLEEVGKQFNVTRERIRQIEAKALRKLK 566 Query: 600 HPSRSEVLRSFL 611 HPSRS L++FL Sbjct: 567 HPSRSAFLKTFL 578 >UniRef50_P61540 RNA polymerase sigma factor rpoD n=20 Tax=Bacteria RepID=RPOD_LEPIC Length = 585 Score = 454 bits (1169), Expect = e-126, Method: Composition-based stats. Identities = 222/607 (36%), Positives = 363/607 (59%), Gaps = 33/607 (5%) Query: 8 QLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLML 67 +++ +++ GK G ++Y ++N+ LP+ I++S++I+D ++++MGI+++EE + + Sbjct: 9 EVQKIISLGKANGEVSYDDINEILPDKILNSEKIDDFFTLLHEMGIEIVEEYTR--NTLE 66 Query: 68 AENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGI 127 +T A+ + + DP+++Y+RE+G V L++ E E+ +AKRIE G Sbjct: 67 PASTLVPKDDSKPARKKKESSASTSGSEDPIKLYLREIGKVSLISGETEVFLAKRIEKGE 126 Query: 128 NQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQ 187 ++ ++ ++ ++ +++ ++ DLI + L H EL Sbjct: 127 KIIEETILSSSILRANYIKLLPKIRSKKIKVYDLIRV----DKMYALNAEEAHKLEELFF 182 Query: 188 EDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQE 247 +++ +++++ + S S +K+ E + + + + I Sbjct: 183 KNILVIQEQEKVLQEAVSKIRKYS----ETSKKYKEFKEKIDASTEIIH----------- 227 Query: 248 EILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPK--KNFITL 305 ++ + K+ + ++ M+ R++ +R +K+ + + + K F Sbjct: 228 ------NAIRELGVSQKEIQKISQKIKSMVFRIKEIDRHFLKIKAQYGQDVRDIKAFNRF 281 Query: 306 FTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRM 365 NE D +++ +V +++ +KL+++E+E G T++++KD ++ Sbjct: 282 IEKNEKLDDIEVKMG----VNIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIKDWGEKI 337 Query: 366 SIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGY 425 GE + +AKKE+V+ANLRLV+SIAK+Y NRG+ F DLIQEGNIGL+KAVDKFEY++GY Sbjct: 338 IKGEREISQAKKELVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGY 397 Query: 426 KFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAE 485 KFSTYATWWIRQAITR+I+DQARTIR+PVHMIE +NK+ R +R +QE GR+P EE+AE Sbjct: 398 KFSTYATWWIRQAITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAE 457 Query: 486 RMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATH 545 R+ P K++ V +A+EPIS+E P+G +EDS LGDFI DT +E P+++A + L Sbjct: 458 RLGWPVQKVKMVKNVAREPISLEIPVGSEEDSELGDFIPDTEVETPVNAAASSILAEQIR 517 Query: 546 DVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSE 605 VL L ARE KV+RMRFG+D TLEEVG QF VTRERIRQIEAKALR+LRHPSRS+ Sbjct: 518 QVLHTLPAREQKVIRMRFGLDDGYPQTLEEVGYQFKVTRERIRQIEAKALRRLRHPSRSK 577 Query: 606 VLRSFLD 612 L+ ++D Sbjct: 578 KLKDYID 584 >UniRef50_B2V7P9 RNA polymerase sigma factor n=20 Tax=Bacteria RepID=B2V7P9_SULSY Length = 590 Score = 453 bits (1166), Expect = e-126, Method: Composition-based stats. Identities = 225/613 (36%), Positives = 354/613 (57%), Gaps = 27/613 (4%) Query: 1 MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQ-IEDIIQMINDMGIQVMEEA 59 + + + ++ L+ +E+GY+TYAE++ ++ E+ SD+ IE +I+ +N++ I V ++ Sbjct: 2 INLHDRDDVRTLINLAREKGYVTYAEISTYVEEEFFSSDENIESLIEYLNELNIDVRDDE 61 Query: 60 PDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDI 119 + D ++ + DPV++Y+REMG + LL R+ EI Sbjct: 62 KIKSEDEDISEHLGIDLSDDDV---------WNKADDPVKLYLREMGKIPLLKRDEEIKY 112 Query: 120 AKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTAT 179 + IE G +V + LL+++ +V +AR+ D++ Sbjct: 113 SMEIERGRKKVFRGLLRTSFLTERLLDEWAKVIDGKARVHDIL--------------NLD 158 Query: 180 HVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKG 239 + +E + +E E +G+ D D + + +L + +T + Sbjct: 159 EPEVKDEEETSESEEFSLENNGNYDKITADFIKKGLELAKLYRDLIEKEKKYLETGSLED 218 Query: 240 RSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPK 299 + Q L + + D + + ++ + ++R E+ K K+ Sbjct: 219 KKEFVWQHAKLNRFIKSLNIKFT--KLDKIADELKELYTKLRKNEKDYEKRIKIISKIHP 276 Query: 300 KNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVK 359 + L + E + + + + E + ++++I+++ G + Sbjct: 277 DIDLMLSSDYEKNPEILKKLEEHGFSYG-RYEILRTETLKLKDEIEEIKQKIGTIPSEFD 335 Query: 360 DINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF 419 + + +G + K+ +V+ANLRLV+SIAKKYTNRGLQFLDLIQEGNIGLMKAVDK+ Sbjct: 336 HVLDLIQLGRNEINNVKQVLVKANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKY 395 Query: 420 EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPT 479 +Y++G+KFSTYATWWIRQAITR+IADQARTIRIPVHMIETINKL RISR ++QE+GREPT Sbjct: 396 DYKKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLLRISRTLVQELGREPT 455 Query: 480 PEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTES 539 PEE+A++ MP DK+RK+L+ +++P+S+ETPIG DE+SHLGDFIED T+ P ++ Sbjct: 456 PEEIAKKAGMPADKVRKILRTSQDPVSLETPIGSDEESHLGDFIEDKTVLSPEQHMLKQA 515 Query: 540 LRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLR 599 LR +VL+ L+ RE +VLR RFG++ +T++TLE+VGK+F VTRERIRQIEAKALRKLR Sbjct: 516 LRLQLDEVLSTLSEREEQVLRYRFGLEDDTEHTLEQVGKRFGVTRERIRQIEAKALRKLR 575 Query: 600 HPSRSEVLRSFLD 612 HP R++ L+ F++ Sbjct: 576 HPHRAKYLKPFIE 588 >UniRef50_A4JT57 RNA polymerase sigma factor n=14 Tax=Burkholderia cepacia complex RepID=A4JT57_BURVG Length = 628 Score = 441 bits (1135), Expect = e-122, Method: Composition-based stats. Identities = 189/607 (31%), Positives = 307/607 (50%), Gaps = 9/607 (1%) Query: 7 SQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLM 66 + L L++ G +G++T+ ++ D LP+D ++ M+ ++GI V + A A + Sbjct: 28 AHLHALISTGLTRGFVTHGDIIDALPDDDAHQGGVDATAAMLRELGIAVSDGAHAAGWTL 87 Query: 67 LA--ENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIE 124 + T A A L++ E RTTDPVR+Y+REMG LLTR+ EI A+RIE Sbjct: 88 DRYFQPTPSARAWAEGAGALAAAELSAPRTTDPVRLYLREMGMTPLLTRDEEIMHAQRIE 147 Query: 125 DGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSE 184 G + P+A+ L+ + S + D ++ A G+ Sbjct: 148 RGRAASVAVLCGDPQALDALVAMRIEIAEGRTAASAYVLSIAD------ISDMAPAGGAA 201 Query: 185 LSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHAT 244 + D + DD A D+ + + A + A R ++ G Sbjct: 202 AASPHAGDTPADAGASTRDDDAPADDGLCRHTVLARLAPIDALTAAMRAALETDGAHGLA 261 Query: 245 AQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFIT 304 + + + + + R+ + + + +R R RT + + E +P Sbjct: 262 YRACVREAAALLGTLRMSMRALERMSEPLRTHARRQRTLHGRLARTLAE-AGVPHGAAAA 320 Query: 305 LFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRR 364 + W + IA + L + E+ A + + + L + + ++ R Sbjct: 321 CVQRDGDHARWLASCIAAHPECEPALTRRAAELVDARDAIARAARTSPLPPDTIALLDAR 380 Query: 365 MSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRG 424 + E + A+ + +ANLRLV+SIAK+Y +RGL F DLIQEGNIGL+KA+D++++RRG Sbjct: 381 LDTIERAMQPARMGLFDANLRLVVSIAKRYPDRGLPFADLIQEGNIGLLKAIDRYDHRRG 440 Query: 425 YKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELA 484 ++FSTYATWWIRQAIT ++AD RTIR+P H ++ INKL RI+R+ Q G TP ELA Sbjct: 441 FRFSTYATWWIRQAITHALADLGRTIRVPTHTVDAINKLTRIAREHRQRSGAAATPHELA 500 Query: 485 ERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAAT 544 +M P DK+R ++ I KEP+S + P+ + + D D + P D+A LR Sbjct: 501 VQMGEPLDKVRDLMSIVKEPMSADAPVSPEGEMTFVDVAPDVSTPSPEDAAGAAQLRDTI 560 Query: 545 HDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRS 604 ++ L AREA VLR+R+G+ + +L ++G+Q +++ ER+RQIEA AL +LR Sbjct: 561 AAMIGRLPAREATVLRLRYGLHADEGCSLRDIGRQLNLSAERVRQIEASALARLRASDGL 620 Query: 605 EVLRSFL 611 +VLR+F+ Sbjct: 621 DVLRAFI 627 >UniRef50_Q1LEA3 RNA polymerase sigma factor n=1 Tax=Cupriavidus metallidurans CH34 RepID=Q1LEA3_RALME Length = 617 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 207/621 (33%), Positives = 343/621 (55%), Gaps = 15/621 (2%) Query: 1 MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP 60 M L LV G E+G+LT+ E++D LP+ I +++ ++G+Q++E Sbjct: 1 MNNTHPESLVALVALGSERGFLTHGEISDALPDSDFG-----QIQRVLEELGVQIVERTL 55 Query: 61 DADDLMLAEN----TADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGE 116 + + L E+ DE E AA + + RTTDPV++Y+RE+GT+ LLTRE E Sbjct: 56 ANEPIRLEEHADALVVDEAVIEEAAAAVMQADGREARTTDPVQLYLREIGTIPLLTREDE 115 Query: 117 IDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAE----E 172 + IA+R E + ++ + P + LL D +E E + DLI + + A Sbjct: 116 VAIARRHEIAVTEMVAEMVSCPLVVYELLTMADEIERGEMAVDDLIDHWDEVPAAAVNVP 175 Query: 173 DLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTR 232 + + + + D +E + S ++ + A +RA+++ Sbjct: 176 AIEMSEAVQDDDPAPGAAGVDLEETDPVSTGASTARSSAALESEVIARLAIVRARFLDWS 235 Query: 233 DTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCV 292 + + + + + + L + + ++ ER I + + Sbjct: 236 RQSRQQAATSDAFV-ALNAIRAELAVYHFSAAAVARLGQVLSTHIAAIQQAERRIAGIVI 294 Query: 293 EQCKMPKKNFITLFTGNETSDTWFNAAIAMNKP-WSEKLHDVSEEVHRALQKLQQIEEET 351 ++C + ++ F+ F G+E W A A ++ L E+ ++++ +E Sbjct: 295 DRCGIAREQFLQTFPGHEIDLGWSEALAAERISGAADALVRAIPEIQAIQREMRVLENRA 354 Query: 352 GLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIG 411 +++ +K++ +R++ A+A+ A+ EM+ +NLRLV+S AKKY +RG+ LDLIQEGN+G Sbjct: 355 AMSLGDLKNLGQRVAKARARAQAARDEMIRSNLRLVVSNAKKYLHRGMPLLDLIQEGNLG 414 Query: 412 LMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQML 471 LM+AVD+F+YRRGYKFSTYATWWIRQ ITR+IAD+ TIRIP+H++E + K+NR SR++ Sbjct: 415 LMRAVDRFDYRRGYKFSTYATWWIRQGITRAIADKGPTIRIPIHLVEVVGKVNRASRELF 474 Query: 472 QEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELP 531 E G P PE LA R+ + K++ +L + KEP+S+E +G+ D+ L D + D P Sbjct: 475 HETGEAPAPEALAARLSLSVKKVKAILDLVKEPLSLEMSVGESGDALLWDTLTDECSASP 534 Query: 532 LDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIE 591 +SA SLR + LA L REAK+++MR+G+D TDYTLEE+G+Q+ ++RER+RQ+E Sbjct: 535 DESAMRVSLRKDLDEALATLKPREAKIVKMRYGVDAGTDYTLEEIGQQYGLSRERVRQLE 594 Query: 592 AKALRKLRHPSRSEVLRSFLD 612 +ALRKLR+P R+ L++ D Sbjct: 595 RQALRKLRNPDRAPRLQAHRD 615 >UniRef50_C0A975 RNA polymerase sigma factor n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A975_9BACT Length = 631 Score = 427 bits (1098), Expect = e-118, Method: Composition-based stats. Identities = 225/606 (37%), Positives = 338/606 (55%), Gaps = 75/606 (12%) Query: 7 SQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLM 66 +++ L+ KEQGYLT+ ++N+ LPE + + ++I++++ ++ ++ I+++E Sbjct: 39 EKIRNLIRLSKEQGYLTFDDINEALPESVENQEEIDNVLSILQNLEIEILE--------- 89 Query: 67 LAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDG 126 + D + + S S DPVRMY+++MG V LLTRE E++I+KRIE Sbjct: 90 -PDQVEDYKQRQEEQEEEESRTSNNDILDDPVRMYLKQMGQVPLLTREQEVEISKRIETA 148 Query: 127 INQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELS 186 ++ Q ++ E ++ ++ E R ++ + E V + Sbjct: 149 ESKAQEALFEASIVGRHIATLGAKLLTREERFDRIVIDKRIESRESYFKALPKLVETTQK 208 Query: 187 QEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQ 246 E+ D E+ + +++ + + + Sbjct: 209 NEESVSDSWEEFQKARNEAD------------------------RKKILSKH-------K 237 Query: 247 EEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLF 306 + L F +F K ++ + + R ++ + ++ +++ K PK Sbjct: 238 KRETTLRSNFSKFFFKLKVYEEWLETNRPVLSEI-----ELLHAQLDRAKTPKTK----- 287 Query: 307 TGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMS 366 D + + +L++IE E + Q+ ++ R+ + Sbjct: 288 ------------------------KDAAIDTKAIHARLREIEVEQRIEPAQLIEVVRKTN 323 Query: 367 IGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYK 426 + +A +AK EMVEANLRLVISIAKKYTNRGL FLDLIQEGN+GLMKAV+KFEYRRGYK Sbjct: 324 VHIREAHQAKTEMVEANLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYK 383 Query: 427 FSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAER 486 FSTYATWWIRQAITRSIADQARTIRIPVHMIET+NK+ ++ +Q+LQE G EPTPEE+A+ Sbjct: 384 FSTYATWWIRQAITRSIADQARTIRIPVHMIETLNKVMQVQKQLLQEFGHEPTPEEVADE 443 Query: 487 MLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHD 546 M +P +++++++K+A++PIS+++P+GD +D+ GDFIED + E P D LR D Sbjct: 444 MNLPVERVQQIMKMAQQPISLQSPVGDGDDTSFGDFIEDKSAENPYDMTAYSLLREKIID 503 Query: 547 VLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEV 606 VL LT RE KVL +RFG+ TLEEVGKQF VTRERIRQIEAKALRK+RHP+R Sbjct: 504 VLDSLTERERKVLSLRFGLVDGYSRTLEEVGKQFKVTRERIRQIEAKALRKMRHPTRIRQ 563 Query: 607 LRSFLD 612 L F D Sbjct: 564 LHGFFD 569 >UniRef50_B3CQ43 RNA polymerase sigma factor n=2 Tax=Orientia tsutsugamushi RepID=B3CQ43_ORITI Length = 615 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 215/578 (37%), Positives = 327/578 (56%), Gaps = 11/578 (1%) Query: 39 DQIEDIIQMINDMGIQVMEEAPDADDLMLAENTADEDA----AEAAAQVLSSVESEIGRT 94 D+ E + I+D I + ++ D L + + +E+ + A + + Sbjct: 33 DESEKLSSKISDSDINL-DKDFDYTKLGVCPDKIEEEEVVLASNATEGEFEEDLDDNIYS 91 Query: 95 TDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAE 154 TD VR Y+++M LL+REGEI++AK++E+G V + P + L++ Y+ + Sbjct: 92 TDIVRAYLKDMSNTTLLSREGEIELAKQMEEGKKTVIHFICHLPYVMKLLIQWYEDLVHS 151 Query: 155 EARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDP 214 + +LI ++ N + H + +E + + + D Sbjct: 152 RILVRNLIE--LESNIYDQPEDDNQHDYDSDGDCEELQNEPLTKVESEILPKILDKMQVV 209 Query: 215 ELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMR 274 + E+ A + + E +L + ++N + Sbjct: 210 SDLATQLFEVAAHDFKLHKS-SCNYQESKKFTELSKELIAAVSNIHFNKQSIKNILNKLY 268 Query: 275 VMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVS 334 + + ++E ++K E+ K+ + +F+ F N S+ + W++ L Sbjct: 269 SVNKDIISKEINLLK-AAEKYKISRHDFL--FQYNSGSNWLQKVKLLHQDEWNKFLSKEK 325 Query: 335 EEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKY 394 + + + +IE+ L +++ K+I + + GE K R AKK+MVE+N RLV+ +AK Y Sbjct: 326 DLIKSTIDYFSEIEQAMLLPLKRFKEIIQAIQNGERKVRVAKKKMVESNTRLVVHVAKPY 385 Query: 395 TNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPV 454 NRGL FLDLIQEGNIGLMKAVDK+ Y GYKFST ATWW+RQ+I+R++ADQARTIRIPV Sbjct: 386 VNRGLPFLDLIQEGNIGLMKAVDKYNYLLGYKFSTCATWWVRQSISRAVADQARTIRIPV 445 Query: 455 HMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDD 514 HM +TI+K+ R+S+QM E+G EPT E+AE++ MP DK++KV++IAKEP+S+E PIG++ Sbjct: 446 HMADTISKIVRVSKQMHNELGYEPTASEIAEKLSMPIDKVKKVMRIAKEPVSLENPIGEE 505 Query: 515 EDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLE 574 + S L DFIED LP++ A SLR T L+ LTARE +VLR+RFGI + TDYTLE Sbjct: 506 DGSCLSDFIEDKNAILPIEEAIKFSLRETTTRALSTLTAREERVLRLRFGIGLPTDYTLE 565 Query: 575 EVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 EVG +F VTRER+RQIEAKALRKL+HP RS+ L+SFL Sbjct: 566 EVGGEFKVTRERVRQIEAKALRKLKHPVRSKKLKSFLS 603 >UniRef50_C0R030 RNA polymerase sigma factor n=2 Tax=Brachyspira RepID=C0R030_BRAHW Length = 587 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 217/609 (35%), Positives = 337/609 (55%), Gaps = 40/609 (6%) Query: 7 SQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLM 66 +++ L+ +G YLT+ E+N + D +D+D ++ + Q++ I ++E+ + + L Sbjct: 15 EKIRKLLEKGNTNKYLTFKEINGAI--DNMDTDVMDILFQLLAARKIVIVEDKREFESLS 72 Query: 67 LAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDG 126 +N D+ A VE ++G DP+R+Y++E+G V LLT + E+D +K+IE G Sbjct: 73 KNQNKIDD------AAKFIHVEDKVGNNDDPIRLYLKEIGKVSLLTHDDEVDYSKKIESG 126 Query: 127 INQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELS 186 ++++ + + +L V+ + + +++ P + S Sbjct: 127 ESEIENIILNTHLVVGEVLNTIKNVQIGKVSIHEIL------------EPPRIYNVSTQE 174 Query: 187 QEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVV--TRDTIKAKGRSHAT 244 + L+ E++ EK+ L + T+ TIKA + Sbjct: 175 KRKLERKYKNFEKEY-------------VALAEKYLSLDKRIKKITTQKTIKALTKEQEE 221 Query: 245 AQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFIT 304 ++ I+KL + RL + D + ++ + R+ E KL K +F Sbjct: 222 VKDSIVKL---LSKVRLNRMEIDRIAEKLKFYLHRINQIEEYFEKLKKRYYK-EISDFEN 277 Query: 305 LFTGNETSDTWFN-AAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINR 363 + E+ + + E + V H+A ++ I +E + E + + R Sbjct: 278 YYKEIESGNKDIYIRLVDEFNITPEAIEAVITSFHKAQVRMADIYDEVRIDKETLVEWVR 337 Query: 364 RMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRR 423 ++ K +AK +V+ANLRLVI+IAKKY NRGL F DL+QEGNIGL+KAVDKFEY++ Sbjct: 338 KIDSSRRKIAQAKDHIVKANLRLVIAIAKKYVNRGLHFFDLVQEGNIGLIKAVDKFEYKK 397 Query: 424 GYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEEL 483 GYKFSTYATWWIRQAITRSI+DQARTIR+PVHMIE INK+ R+ RQ +Q+ GREP+ +E+ Sbjct: 398 GYKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINKVQRVLRQYMQQHGREPSIQEI 457 Query: 484 AERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAA 543 A+ + PE +++ V +AK+P+S+ PIGD+ED+ LG+ IED E P + T + LR Sbjct: 458 AKALSWPESRVKSVRNVAKDPVSLNAPIGDEEDTILGELIEDKEFESPQNITTFKILRKQ 517 Query: 544 THDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 603 +L L RE KV+RMRFG+ +TLEEVG F VTRERIRQIEAKA+R+LR S+ Sbjct: 518 IDSILDSLPDREQKVIRMRFGLVDGYSHTLEEVGYVFKVTRERIRQIEAKAIRRLRAQSK 577 Query: 604 SEVLRSFLD 612 + L+ FLD Sbjct: 578 KKELKDFLD 586 >UniRef50_Q2GE94 RNA polymerase sigma factor n=2 Tax=Neorickettsia RepID=Q2GE94_NEOSM Length = 620 Score = 424 bits (1090), Expect = e-117, Method: Composition-based stats. Identities = 205/626 (32%), Positives = 327/626 (52%), Gaps = 43/626 (6%) Query: 9 LKLLVTRGKEQGYLTYAEVNDHLPEDIV-DSDQIEDIIQMINDMGIQVMEEAPDADDLML 67 +K L+T+G ++G++TY E++D ++ + + IE+ I + + GI ++E+ + + Sbjct: 13 VKALITKGVKRGFVTYGELSDSFSDEDFENLNCIEEAISKLEESGIGILEKDEEDEL--- 69 Query: 68 AENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGI 127 + + + +G T DPVR+Y+REM V+LL+R+ E++IAK I Sbjct: 70 ------SEEVKEEDEEEDEAADILGHTDDPVRLYLREMSYVKLLSRDDEVEIAKAIVAEK 123 Query: 128 NQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQ 187 + +V +P + ++ ++ L ++I +E T + Sbjct: 124 FESLSAVLLFPSVLKSIVNLGTKLRECTISLREVIESDSGLKSEL----TEETGKGDDLF 179 Query: 188 EDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYV-VTRDTIKAKGRSHATAQ 246 E +D +E + D++ + I EL + L + + + Sbjct: 180 EGMDGKPEEGNQMSDEELMEKVLDIFGELETIITSALDKAKEGQMVKIVDGEVILDPEYR 239 Query: 247 EEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLF 306 E Q +L PK + R + + ++++++ +E+ + + I Sbjct: 240 ELHTLAVNHLNQVKLNPKLLAEFFENTRKKNELILEKKKVLLTF-LEEHGLDRTVLIK-- 296 Query: 307 TGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMS 366 +A + + D + L ++++E+ G+ + + R+++ Sbjct: 297 ----GKVHILDAVVLSELLKEHNICDTHFSLEEFLSPIRELEKNEGMDYRSISFLTRKVA 352 Query: 367 IGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYK 426 A AK MVEANLRLVISIAKKYTNRG+ F DLIQEGNIGLMKAVDKF++RRG+K Sbjct: 353 THLDNANAAKHRMVEANLRLVISIAKKYTNRGMPFPDLIQEGNIGLMKAVDKFDHRRGHK 412 Query: 427 FSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAER 486 FSTYATWW RQAITR+IAD +R PVH+ ET NK+ R R++ GREPT EE+A Sbjct: 413 FSTYATWWCRQAITRAIADCGSIVRKPVHIHETANKVMRTRRRLYNLNGREPTVEEIANL 472 Query: 487 MLMPEDKIRKVLKIAKEPISMETPIGDDEDS-HLGDFIEDTTLELPLDSATTESLRAATH 545 + + DK++K LK+ ++PIS+E+P+GDD +S GDFIED +D +++LR Sbjct: 473 LKISPDKVKKSLKVNQDPISLESPVGDDSNSGSFGDFIEDKNAVSQVDVVLSKNLRKVLD 532 Query: 546 DVLAGLTAREAKVLRMRFG--------------------IDMNTDYTLEEVGKQFDVTRE 585 + LA L+ RE K+LR RFG ++ T+ TLE+VG ++VTRE Sbjct: 533 EALAMLSPREEKILRYRFGLCNSVHSPEDEHYLKSLKIDLNRGTNLTLEQVGILYNVTRE 592 Query: 586 RIRQIEAKALRKLRHPSRSEVLRSFL 611 RIRQIE+K+LRK+R PSRS LR+FL Sbjct: 593 RIRQIESKSLRKMRSPSRSIKLRTFL 618 >UniRef50_B2UM02 RNA polymerase sigma factor n=7 Tax=Verrucomicrobia RepID=B2UM02_AKKM8 Length = 688 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 233/609 (38%), Positives = 326/609 (53%), Gaps = 80/609 (13%) Query: 4 NPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDAD 63 Q +++ L+ KEQGYLT+ ++ND LP DIVD E I+ + M +++ + Sbjct: 156 EIQEKIRELIKLAKEQGYLTFDDINDSLPNDIVDQQDYEAIMDRLRSMAFDIIDASD--- 212 Query: 64 DLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRI 123 + T + +E+++ DPVRMY+++MG V LLTRE E+ I+KRI Sbjct: 213 ---VDSYTDRTRISTEEEDEEEKLEAKMDILDDPVRMYLKQMGQVSLLTREEEVAISKRI 269 Query: 124 EDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGS 183 ED VQ V + L+ R+ E R +I Sbjct: 270 EDAEQNVQRCVHRFGFIANAYLDVAYRLLDNEERFDRVILD------------------- 310 Query: 184 ELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHA 243 +RE++ I+ + + Sbjct: 311 -----------------------------KKIDSRERY---MKGLAQLCAQIQQTHQDAS 338 Query: 244 TAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFI 303 + ++ + E K + +FD + ++ R+ + ++I C Sbjct: 339 GSFRKLYRSKEAAKSVKARQAEFDKVAGALVKFFGRLYFKHKVIEDFCS----------- 387 Query: 304 TLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINR 363 +K + + + L ++E +T +++ D + Sbjct: 388 ------------MIDEARDRVLRMQKKVALEPDNKELKEHLAELELRMWMTADEMGDAYQ 435 Query: 364 RMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRR 423 + +ARRAK EMVEANLRLVISIAKKYTNRGL FLDLIQEGN+GLMKAV+KFEYRR Sbjct: 436 ELRKWLREARRAKDEMVEANLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRR 495 Query: 424 GYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEEL 483 GYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKL R+ +Q++QE GREPTPEE+ Sbjct: 496 GYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLMRVQKQLVQEYGREPTPEEI 555 Query: 484 AERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAA 543 AE + +P +++R VLK+A++PIS++ P+GD +D+ GDFIED E P++ A+ L+ Sbjct: 556 AEEIHLPVERVRSVLKMAQQPISLQAPVGDSDDTSFGDFIEDKAAENPMEEASFSFLKEK 615 Query: 544 THDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 603 DVL LT RE +V+ RFG+ + TLEEVG+QF VTRERIRQIEAKALRKLRHP+R Sbjct: 616 IKDVLDTLTDREREVIEQRFGLRDGSPRTLEEVGRQFSVTRERIRQIEAKALRKLRHPTR 675 Query: 604 SEVLRSFLD 612 ++ FL+ Sbjct: 676 ISKIKGFLE 684 >UniRef50_Q9Z7F0 RNA polymerase sigma factor rpoD n=15 Tax=Chlamydiales RepID=RPOD_CHLPN Length = 572 Score = 421 bits (1083), Expect = e-116, Method: Composition-based stats. Identities = 231/611 (37%), Positives = 332/611 (54%), Gaps = 72/611 (11%) Query: 2 EQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPD 61 E+ Q +L+ LV KEQG++TY E+N+ LP +QI+ ++ + M IQV+ + Sbjct: 16 EEESQKKLEELVALAKEQGFITYEEINEILPMSFDTPEQIDQVLIFLTGMDIQVLNQI-- 73 Query: 62 ADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAK 121 + ++ + A ++ G DPVRMY++EMGTV LLTRE E++I+K Sbjct: 74 -------DVERQKEKKKEAKELEGLARRTEGTPDDPVRMYLKEMGTVPLLTREEEVEISK 126 Query: 122 RIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHV 181 RIE Q++ + + + + + + + R +I+ Sbjct: 127 RIEKAQVQIERIILRFRYSAKEAISIAHYLISGKERFDKIIS------------------ 168 Query: 182 GSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRS 241 + F +L + + Sbjct: 169 ------------------------------EKEVEDKTHFLKLLPKLITLLKEEDTY--- 195 Query: 242 HATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKN 301 + L KQ L ++ L +S+ R+RT + ++ + + ++ Sbjct: 196 -------LENLLLSLKQPDLSKQEAAKLNDSLEKC--RIRT--QAYLRCFHCRHNVT-ED 243 Query: 302 FITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDI 361 F + S I K +E+ + ++ A +KL + E G T+E+ K Sbjct: 244 FGEVVFKAYDSFLHLEQQINDLKVRAERNKFAAAKLAAAKRKLYKREVAAGRTLEEFKKD 303 Query: 362 NRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY 421 R + K++ AKKEMVE+NLRLVISIAKKYTNRGL FLDLIQEGN+GLMKAV+KFEY Sbjct: 304 VRMLQRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEY 363 Query: 422 RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPE 481 RRGYKFSTYATWWIRQA+TR+IADQARTIRIPVHMIETINK+ R +++++ E G+EPTPE Sbjct: 364 RRGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTPE 423 Query: 482 ELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLR 541 ELAE + + D++R++ KIA+ PIS++ +G+ +S GDF+EDT +E P ++ L+ Sbjct: 424 ELAEELGLTPDRVREIYKIAQHPISLQAEVGEGSESSFGDFLEDTAVESPAEATGYSMLK 483 Query: 542 AATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHP 601 +VL LT RE VL RFG+ TLEEVG F+VTRERIRQIEAKALRK+RHP Sbjct: 484 DKMKEVLKTLTDRERFVLIHRFGLLDGKPKTLEEVGSAFNVTRERIRQIEAKALRKMRHP 543 Query: 602 SRSEVLRSFLD 612 RS+ LR+FLD Sbjct: 544 IRSKQLRAFLD 554 >UniRef50_B2KBW8 RNA polymerase sigma factor n=2 Tax=Elusimicrobia RepID=B2KBW8_ELUMP Length = 571 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 193/607 (31%), Positives = 312/607 (51%), Gaps = 42/607 (6%) Query: 7 SQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLM 66 K LV GKE G+LT E+N L + ++ I+ ++ + D+GIQV++ + Sbjct: 7 KAFKDLVEVGKENGFLTLDEINRSLTSSSMSAEDIDGLMGTLEDLGIQVVDRK-KYKSVA 65 Query: 67 LAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDG 126 +AE A + A ++ +RMY+ EMG V LL+R+ EI +A+ + + Sbjct: 66 MAEKEAYTEEFMANPD-----------ISNSIRMYLSEMGKVPLLSRDEEITLARNVRER 114 Query: 127 INQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELS 186 +++ V E P + + + V+ EE +L+ Sbjct: 115 EKELRKLVLESPITMREICNWEELVDQEEMTTKELM------------------------ 150 Query: 187 QEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQ 246 + + A E +LR + + + Sbjct: 151 PRGKRTTRELNNMRKKLKEAAKFIGKREGEITELMKKLREPSIS-DKMLNKYT---EALE 206 Query: 247 EEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLF 306 ++ ++ + + L + L N ++ + R+ + + ++ LF Sbjct: 207 KKQKEVVDSIIKLNLNQNKIKRLTNRIKSLAQRIAESRNDLNRF--DEYFGQYAEVKKLF 264 Query: 307 TGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMS 366 T + E+L + + +++ ++ ++ N R+ Sbjct: 265 TQASKGKISKAELKKKTRFTYEELETAINNIDMIRSRHEKLINTLPMSEKEFLAFNDRIV 324 Query: 367 IGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYK 426 E + K ++++ANLRLV+SIAKK+ N L+ DLIQEG +GLMKAV+KFEY+RG+K Sbjct: 325 FFEDMILQDKLKLIKANLRLVVSIAKKHVNSNLELSDLIQEGGLGLMKAVEKFEYKRGFK 384 Query: 427 FSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAER 486 FSTYATWWIRQ+I R+IADQA TIRIPVHM E ++KL +++ + QE GREP+ E+ ++ Sbjct: 385 FSTYATWWIRQSINRAIADQANTIRIPVHMKELVSKLTKVTNKFRQEHGREPSLEDYSKS 444 Query: 487 MLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHD 546 + + +K++ VLKI ++PIS+ TP+G+DEDS+L DFIED P +A+ + + Sbjct: 445 LRLSMEKVKGVLKIMQDPISLSTPVGEDEDSNLEDFIEDKAGANPTVTASDFLRKQEVSE 504 Query: 547 VLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEV 606 VL L+ REAK++R+RFGID TLEEVGK F+VTRER+RQIEAKA+RKLRHPSR+++ Sbjct: 505 VLNTLSEREAKIIRLRFGIDSGYPRTLEEVGKMFNVTRERVRQIEAKAIRKLRHPSRTKM 564 Query: 607 LRSFLDD 613 L+ + D+ Sbjct: 565 LKDYSDE 571 >UniRef50_D2R6R0 RNA polymerase, sigma 70 subunit, RpoD subfamily n=7 Tax=Planctomycetaceae RepID=D2R6R0_9PLAN Length = 544 Score = 410 bits (1055), Expect = e-113, Method: Composition-based stats. Identities = 197/604 (32%), Positives = 311/604 (51%), Gaps = 71/604 (11%) Query: 8 QLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLML 67 +LK LV +G QGYLTY +VN++LP+ V+ +++++++ + GI+++++ P Sbjct: 7 ELKELVAKGNTQGYLTYEDVNNYLPDQDVNPEKLDNLLVALEHAGIELVDQPPVEPGKPR 66 Query: 68 AENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGI 127 + DA + + +DP+R+Y+ +M + LL+R+ EI +AK+IE Sbjct: 67 LFVPRESDAVPLKPEESKKL------NSDPIRLYLSQMAEIPLLSRQEEISLAKKIEVTR 120 Query: 128 NQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQ 187 + + ++ A+ ++ +V A E I + ++ Sbjct: 121 KRFRRTILSCDYAMRATVQTLTQVYAGELPFDRTIKVSLTEQLTKEQILARM-------- 172 Query: 188 EDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQE 247 N E + + + + + + + +S T Sbjct: 173 --------------------PHNLRSIEQLLGRNKKAFGKLIRPSTSREERQQSRRTFLR 212 Query: 248 EILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFT 307 K ++ ++ L ++ L+ M + R+ + + E Sbjct: 213 GRGKCLQLVEELSLRTRRVQPLMKEMEQLASRMERVRARLKAIKQEDG------------ 260 Query: 308 GNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSI 367 E ++L + ET + ++ M Sbjct: 261 -------------------------RRFERRSLRRELHHLMMETLESPRSLRARCVAMQR 295 Query: 368 GEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKF 427 + AK+++ NLRLV+SIAKKY NRGL FLDLIQEGN GLM+AVDK+EYRRG+KF Sbjct: 296 QYIEYEAAKRQLSSGNLRLVVSIAKKYRNRGLSFLDLIQEGNTGLMRAVDKYEYRRGFKF 355 Query: 428 STYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERM 487 STYATWWIRQAITR+IADQARTIRIPVHMI+ ++KL + +++LQE+GREPT EE+ + Sbjct: 356 STYATWWIRQAITRAIADQARTIRIPVHMIDVLSKLRNVQKKLLQELGREPTTEEVTALV 415 Query: 488 LMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDV 547 +P +++++VL I + P+S++ P+GD EDS G+FIEDT + P+ AT LR + Sbjct: 416 DLPLEEVKRVLDIGRHPVSLDRPVGDSEDSSFGEFIEDTASDNPVLCATNGILRERIDGL 475 Query: 548 LAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVL 607 L LT RE +++R+R+G+ YTLEEVG+ F VTRER+RQIEAKA+RKL+HP RS+ L Sbjct: 476 LKTLTWREREIIRLRYGLCDGYTYTLEEVGRIFKVTRERVRQIEAKAVRKLQHPVRSKQL 535 Query: 608 RSFL 611 FL Sbjct: 536 EGFL 539 >UniRef50_A2WDQ1 RNA polymerase sigma factor n=10 Tax=Proteobacteria RepID=A2WDQ1_9BURK Length = 773 Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 241/503 (47%), Positives = 325/503 (64%), Gaps = 12/503 (2%) Query: 3 QNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDA 62 + + +L+ L+ GKE+G+LTYAE+NDHLP++ +++ +E II NDMG+ V E+APDA Sbjct: 181 EERRVKLRALIKLGKERGFLTYAEINDHLPDNFTETEALEGIIGTFNDMGVAVYEQAPDA 240 Query: 63 DDLMLAEN----TADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID 118 + L+L +N ++D++ E A LS+V+SE GRTTDPVRMYMREMGTVELLTREGEI+ Sbjct: 241 ETLLLNDNAPAASSDDEVEEEAEVALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIE 300 Query: 119 IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEED----- 173 IAKRIEDG+ + +++ P I +L +RV EE R+ +L+ G +DPNA + Sbjct: 301 IAKRIEDGLRHMVMAISACPTTIADILAMAERVANEEIRVDELVDGLLDPNAADTDTDGF 360 Query: 174 ---LAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVV 230 A + + +E+ +++E++D+ + + EKFA + + Sbjct: 361 SAKEAEAIENEDEDAEEEEEEEEEEDDDGAAQATANAAQLEALKRASLEKFALISEWFDK 420 Query: 231 TRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKL 290 R + +G + + R + + L +++R +D VR ER I+ + Sbjct: 421 MRRAFEKEGYKSKAYLKAQETIQSELMTIRFTARTVERLCDTLRAQVDEVRQVERQILHI 480 Query: 291 CVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEE 350 V++C MP+ FI F GNET W A P+S L + Q+L ++ Sbjct: 481 VVDKCGMPRSEFIARFPGNETDLDWAEKIAAEGHPYSAVLSRNIPAIREQQQRLLDLQAR 540 Query: 351 TGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNI 410 L ++ +K+ NR+M+ GE KAR+AK+EM EANLRLVISIAKKYTNRGLQFLDLIQEGNI Sbjct: 541 VVLPLKDLKETNRQMAAGELKARQAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNI 600 Query: 411 GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQM 470 GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK+NRISRQ+ Sbjct: 601 GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQI 660 Query: 471 LQEMGREPTPEELAERMLMPEDK 493 LQE G EP P LAE+M MPE + Sbjct: 661 LQETGLEPDPATLAEKMEMPETR 683 >UniRef50_P52323 RNA polymerase sigma factor rpoD n=32 Tax=Borrelia RepID=RPOD_BORBU Length = 631 Score = 399 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 187/653 (28%), Positives = 341/653 (52%), Gaps = 67/653 (10%) Query: 1 MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP 60 +E+ ++ ++T ++ L+++E+++ LP+DI++ + ++ I ++ D GI+++ + Sbjct: 4 LEKKYSKLIEGIITHLGDRKSLSFSELSNLLPDDILEPEILDCICSVLEDRGIRLVNKIS 63 Query: 61 DADDLMLAENT----------------------ADEDAAEAAAQVLSSVESE-------- 90 + D ++ + +DE+ + ++ E + Sbjct: 64 ELDLVVSEDGNDEEEEVEIESDRNFMILDDGFQSDEEDIDIDVKLDDCDEEDISVKDDLG 123 Query: 91 ----------IGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEA 140 + DP+++Y++E+G LLT E+++AK+++ G + ++ + Sbjct: 124 SGYIKGNVLKDSHSEDPIKLYLKEIGKEFLLTGNQEVELAKQMDSGESIIENILKNEGLV 183 Query: 141 ITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEED 200 I + + + R E ++ + +++ Sbjct: 184 IENYYNLVNTIYSRMER--------------------EEFFKREKDKDKESSPDYYNKKK 223 Query: 201 GDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFR 260 + Y + D + ++E L L E+ + Sbjct: 224 RIASFYKIPLKPIQDRLISYVDNKHRVYDLGGDIFEKN------LKKERLALKELLRDIP 277 Query: 261 LVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAI 320 L ++ + ++++ +R ++ + + K+ K + + + T Sbjct: 278 LYQEELRIFSDDYIDSANKIKDLQRQ-QRIILSRLKIEKIRDLRVLGRDLTIAEKKIEIE 336 Query: 321 AMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMV 380 K + + + E A ++L++IE +++ ++ ++ G+ + AK +++ Sbjct: 337 KSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPTDKIISMSEEIAKGKQMMQHAKDQLI 396 Query: 381 EANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAIT 440 +ANLRLV+SIAKKY NRGL F DL+QEGNIGL+KAV+KFEY+RG+KFSTYATWWIRQAIT Sbjct: 397 KANLRLVVSIAKKYANRGLHFFDLVQEGNIGLIKAVEKFEYKRGFKFSTYATWWIRQAIT 456 Query: 441 RSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKI 500 RSI+DQARTIR+PVHMIE IN+LNR +R ++Q +G++PT EEL++R+ K++ V + Sbjct: 457 RSISDQARTIRVPVHMIEQINRLNRETRYLIQVLGKDPTDEELSDRLGWELKKVKTVKSV 516 Query: 501 AKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLR 560 ++EP+S+ETPIG++EDS L DFIED ++ P + + L+ +L L RE +V++ Sbjct: 517 SREPVSLETPIGEEEDSVLSDFIEDKAIKNPANHTSFVVLQDQIRAILGTLPEREQEVVK 576 Query: 561 MRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 MRFG++ TLEEVG F+VTRERIRQIE+KALR+L++P +++ L+ +L+D Sbjct: 577 MRFGLEDGYSLTLEEVGLHFNVTRERIRQIESKALRRLKNPKKTQKLKDYLED 629 >UniRef50_A6CE36 RNA polymerase sigma factor n=6 Tax=Planctomycetales RepID=A6CE36_9PLAN Length = 588 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 197/617 (31%), Positives = 306/617 (49%), Gaps = 76/617 (12%) Query: 7 SQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP---DAD 63 + L LL ++QG+LT+ +V+ LP++ D IE I+ + + G+ ++++ D + Sbjct: 6 ANLNLLFQEAEKQGFLTFQQVHTFLPDEGGDPSLIEYIVVGLEERGLDLIDDPNADIDDE 65 Query: 64 DLMLAENTADEDAAEAAAQVLSS--------VESEIGRTTDPVRMYMREMGTVELLTREG 115 ++ +++A+ + A S + DP+RMY+ +MG + LL+R Sbjct: 66 EVASVDSSANTHSDVAQGADEDSDDASSSIVEPETSLSSRDPIRMYLSQMGNIPLLSRSR 125 Query: 116 EIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLA 175 EI +AK+IE + + +V E A+ ++ ++V A E + +A +D Sbjct: 126 EIFLAKKIEITRKRFRRTVLESDFALKIAIDTLEKVFAGELPFERTLRTSDTEDATKDQI 185 Query: 176 PTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTI 235 + L + ++ E + + + + Sbjct: 186 MGRMPYNIATLKALLQKNNEDFELIQSGELGKVEQREVQKRMVVR--------------- 230 Query: 236 KAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQC 295 K++ + ++ L ++ ++ + + R+R + + Sbjct: 231 -------------RQKMATLCEELCLRTQRLQPVLKRIHQIAGRMREVQEQLEDY----- 272 Query: 296 KMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTI 355 K T + + + M SE S E+ R Sbjct: 273 ----KQLRHKATDHRLLERELSELTIMVVETSEDFQTRSREIKRRFD------------- 315 Query: 356 EQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKA 415 AK+++ NLRLV+SIAKKY NRGL FLDLIQEGN GLM+ Sbjct: 316 ---------------DWTEAKQQLSGGNLRLVVSIAKKYRNRGLSFLDLIQEGNAGLMRG 360 Query: 416 VDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMG 475 V+K+EYRRGYKFSTYATWWIRQAITR++AD ARTIRIPVHM ++I+ L S Q+ QE G Sbjct: 361 VEKYEYRRGYKFSTYATWWIRQAITRAVADHARTIRIPVHMFQSISTLKARSEQIRQETG 420 Query: 476 REPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSA 535 REPT EELA+ + + ++ +++K K PIS++TP+G+ EDS GDF+ED P D+A Sbjct: 421 REPTMEELADSVGLGVEETERIMKTWKHPISLDTPVGESEDSSFGDFLEDGHESSPADAA 480 Query: 536 TTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKAL 595 E L+ VL LT RE +++R+R+G+ YTLEE G+ F VTRERIRQIE+KAL Sbjct: 481 MREMLKDKIEHVLKSLTYREREIIRLRYGLGDGYSYTLEETGRIFKVTRERIRQIESKAL 540 Query: 596 RKLRHPSRSEVLRSFLD 612 RKL+H +RS LR F+D Sbjct: 541 RKLQHQTRSAHLRGFVD 557 >UniRef50_Q9ZMY3 RNA polymerase sigma factor rpoD n=59 Tax=Epsilonproteobacteria RepID=RPOD_HELPJ Length = 681 Score = 394 bits (1013), Expect = e-108, Method: Composition-based stats. Identities = 190/557 (34%), Positives = 302/557 (54%), Gaps = 6/557 (1%) Query: 56 MEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREG 115 + + + DE+ + + E R+ PVRMY+REMG ++LL+++ Sbjct: 128 LNAIDKIKNTEEKQKVLDEELEDGYDFLKEKDFLEWSRSDSPVRMYLREMGDIKLLSKDE 187 Query: 116 EIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLA 175 EI+++K+I G + + ++ P I ++ D + E R+ +L F D + Sbjct: 188 EIELSKQIRLGEDIILDAICSVPYLIDFIYAYKDALINRERRVKELFRSFDDDDENSVSD 247 Query: 176 PTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTI 235 P E + + +++ + + + +E L A D + Sbjct: 248 PKKDDDSEEDEENEERKKVVSEKDKKRVEKVQESFKALDKAKKEWLKALEAPIDEKEDEL 307 Query: 236 KAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQC 295 T + L + K + LV +M + E+ + +L + Sbjct: 308 VR----SLTLAYKRQTLKDRLYDLEPTSKLINELVKTMETTLKSGDGFEKELKRLEYKLP 363 Query: 296 KMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTI 355 + I + T + + + V ++ + + EE L Sbjct: 364 -LFNDTLIANHKKILANITNMTKEDIIAQVPEATMVSVYMDLKKLFLTKEASEEGFDLAP 422 Query: 356 EQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKA 415 ++K+I ++ G+ + RAK +M ++NLRLV+SIAK++T+RGL FLDLIQEGNIGLMKA Sbjct: 423 NKLKEILEQIKRGKLISDRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKA 482 Query: 416 VDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMG 475 VDKFE+ +G+KFSTYATWWI+QAI+R+IADQARTIRIP+HMI+TIN++N++ R+ +QE G Sbjct: 483 VDKFEHEKGFKFSTYATWWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETG 542 Query: 476 REPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSA 535 +EP E +AE + + DK++ V+K+ KEPIS+ETP+G+D+D GDF+ED + +D Sbjct: 543 KEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHI 602 Query: 536 TTESLRAATHDVLAGLTAREAKVLRMRFG-IDMNTDYTLEEVGKQFDVTRERIRQIEAKA 594 E L+A VL L RE V+RMRFG +D +D TLEE+GK+ +VTRER+RQIE+ A Sbjct: 603 MREDLKAQIESVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSA 662 Query: 595 LRKLRHPSRSEVLRSFL 611 ++KLR P +LR++L Sbjct: 663 IKKLRSPQYGRILRNYL 679 >UniRef50_O83506 RNA polymerase sigma factor rpoD n=11 Tax=Bacteria RepID=RPOD_TREPA Length = 611 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 208/634 (32%), Positives = 333/634 (52%), Gaps = 47/634 (7%) Query: 1 MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQI-EDIIQMINDMGIQVMEEA 59 ME + + L+ +E+ +T+ EV + L V+++++ D++ M+ I+V Sbjct: 2 MELSRTPAVMRLLEYAREKKAITHDEVENILAHYGVETEELLHDVLDMLEQENIKVFSSE 61 Query: 60 PDADDLMLAENTADEDAAEAAAQVLSSVESEIGRT--------------------TDPVR 99 + + + A + S E + DPV+ Sbjct: 62 EEELEDEVFAGLKGPAADDGDGSFPLSTERVRDKLCDSSRGARQNLLSNARNIALDDPVK 121 Query: 100 MYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLS 159 +Y+R++G +LLT E E+ ++KR+E+G ++ + + + + + + Sbjct: 122 LYLRDIGQEKLLTAEQEVMLSKRMEEGEGIIKDIITQSGLLLPEFYHIGRSLSKKALAVL 181 Query: 160 DLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELARE 219 D P + + E++ D + G+ + ++ Sbjct: 182 D---------------PAESGRTRKEISEEMADRRRLKQAYGEVLRSLYPEMRHYMAMKK 226 Query: 220 KFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDR 279 + E V + + + + L +V Q + + +++ R + + Sbjct: 227 RLDERGEPVTV----LSSDEEVCKQRDKLLSCLQKVDLQLEEIDRFSRKFLDTARKIREY 282 Query: 280 VRTQERLIMKLCV-EQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVH 338 R ++R +L + + C M K ++ + ++ ++ Sbjct: 283 KRRKDRHEKQLMIADLCDMRKIGRGLAVPRQRAKLEETLGMS------ADCIQEIYTQIQ 336 Query: 339 RALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRG 398 + ++L++IE + TI+ + + R + G ++AK +++ ANLRLV+SIAKKYTNRG Sbjct: 337 KVTRRLRRIEYDFENTIDGILSMARAIHRGHVMLKKAKDKLINANLRLVVSIAKKYTNRG 396 Query: 399 LQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIE 458 L F DL+QEGNIGL+KAV+KFEYR+GYKFSTYATWWIRQAITRSI+DQARTIR+PVHMIE Sbjct: 397 LLFFDLVQEGNIGLIKAVEKFEYRKGYKFSTYATWWIRQAITRSISDQARTIRVPVHMIE 456 Query: 459 TINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSH 518 INK+ R SRQ+LQ+ GREP+ EE+A+++ +K+++V +A+EPIS+ETPIG++EDS Sbjct: 457 QINKVTRESRQLLQKFGREPSDEEIAQQLCWTVEKVKQVKSVAREPISLETPIGEEEDSS 516 Query: 519 LGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGK 578 LGDF+ D +E P L+ +L+ L ARE +VLRMRFG+D + TLEEVG Sbjct: 517 LGDFVPDADVENPSRVTERVLLKEEVRSILSALPAREHEVLRMRFGLDGDYSQTLEEVGL 576 Query: 579 QFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 FDVTRERIRQIEAKAL++LRHP S L+ FLD Sbjct: 577 YFDVTRERIRQIEAKALKRLRHPRHSRRLKDFLD 610 >UniRef50_C8R064 RNA polymerase sigma factor n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R064_9DELT Length = 555 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 202/567 (35%), Positives = 294/567 (51%), Gaps = 72/567 (12%) Query: 48 INDMGIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTT-DPVRMYMREMG 106 + + ++ DL ++D + E DPV++Y++EMG Sbjct: 59 LGRKTVSEDDDTSAGADLPGNYRADNDDDGDDEVGDPYFWPGESATDQVDPVKVYLQEMG 118 Query: 107 TVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFV 166 V LL+ E E+ +AK IE G +Q ++ P A+ YL E +++ LSD++ G Sbjct: 119 AVALLSSEEEVAVAKEIERGERTIQDALVIAPPALAYLDEIAKKIQHGNRMLSDIVRGLD 178 Query: 167 DPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRA 226 + + E E+++ ++ + E + +L Sbjct: 179 ELDKET----------------------HEEKQKNFLWRIEEALRLARETTALRRDQL-- 214 Query: 227 QYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERL 286 + + R + + +F R K +V +R + ++ Sbjct: 215 -NAAGSNEGAQERRQQSRIDRNRKAQAALFADDRFSAKHLQAMVRLLRELESKL------ 267 Query: 287 IMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQ 346 I G + D + Sbjct: 268 ----------------IGPKPGGQDQDA------------------------ALQEWHFT 287 Query: 347 IEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQ 406 E+ GL +++ + ++S+GE +R AK +V++NLRLV+S+AKKY RGLQ LDL+Q Sbjct: 288 CLEQYGLDRQELSALLAQISLGEEISREAKNRLVQSNLRLVVSVAKKYAGRGLQLLDLVQ 347 Query: 407 EGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRI 466 EGNIGLMKAV+KFEYRRGYKFSTYATWWIRQA+TR+IADQ RTIRIPVHMI+TIN++ + Sbjct: 348 EGNIGLMKAVEKFEYRRGYKFSTYATWWIRQAVTRAIADQGRTIRIPVHMIDTINRMLKG 407 Query: 467 SRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDT 526 +++ ++ GREPTPEE+AE + + K++ +LKIAKEP+S++TP+G EDS L DFIED Sbjct: 408 AKEYQRQHGREPTPEEMAEHLGVDIAKVKSILKIAKEPLSLDTPVGSGEDSFLSDFIEDA 467 Query: 527 TLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRER 586 P ++ +SL+ VL LT RE VLR+RFGID TD TLEEVG+ F VTRER Sbjct: 468 DSTSPDEATIYDSLQDNLARVLKTLTPREEMVLRLRFGIDTATDLTLEEVGENFSVTRER 527 Query: 587 IRQIEAKALRKLRHPSRSEVLRSFLDD 613 IRQIEAKAL+KL+HP+R +L F DD Sbjct: 528 IRQIEAKALKKLKHPTRKSILSPFYDD 554 >UniRef50_D2R2I8 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2 Tax=Planctomycetaceae RepID=D2R2I8_9PLAN Length = 545 Score = 384 bits (987), Expect = e-105, Method: Composition-based stats. Identities = 187/564 (33%), Positives = 276/564 (48%), Gaps = 64/564 (11%) Query: 49 NDMGIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTV 108 ++ I +E + + + A + T DPVRMY+ +MG + Sbjct: 30 SEDRIGTHDEFELDAFAEVDVEIDEIEVDVEVASEHGDELESVDATDDPVRMYLMQMGQI 89 Query: 109 ELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDP 168 LL R EID A+ IE + + S+ + +E +RV + RL I Sbjct: 90 PLLNRTQEIDSARTIEATRLKFRHSMLATDYVLQGAVELLERVRDGQLRLDRTI------ 143 Query: 169 NAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQY 228 V + E + N D ++ + + + Sbjct: 144 -----------EVSVTNTSEKKRIMKRIWPNLSTLRHLLSANIADYNISISRSKPMHERR 192 Query: 229 VVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIM 288 + + K + ++ L + L + + ++ R++T I Sbjct: 193 DAWKRLV-----------RRRNKCVRLVEEMNLRNNRLQPLFDKLSDILGRMKTLRSQI- 240 Query: 289 KLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIE 348 ++ I +G T+ ++L + Sbjct: 241 ----------REANIHGVSGGRTAQQ-------------------------LRKELVHLM 265 Query: 349 EETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEG 408 T T +K R + AK+ + NLRLV+SIAKKY NRGL FLDLIQEG Sbjct: 266 RITLETPATLKRRIVRTNEYRENYDAAKRVLSAGNLRLVVSIAKKYRNRGLSFLDLIQEG 325 Query: 409 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISR 468 N GLM+AVDKFEY RGYKFSTYATWWIRQAITR+IADQ+RTIR+PVHMI+T++K+ ++R Sbjct: 326 NTGLMRAVDKFEYARGYKFSTYATWWIRQAITRAIADQSRTIRVPVHMIDTMSKVRAVTR 385 Query: 469 QMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTL 528 Q++QE+GREPTPEE+A + D R VLK+A++P+S++ P+GD +DS+ G+F+ D Sbjct: 386 QLVQELGREPTPEEVARVAGLTLDDARCVLKMARQPLSLDQPVGDHDDSYFGEFLADHRE 445 Query: 529 ELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIR 588 E PL ++L+ + + GL RE ++LR+R+G+ YTLEEVGK F VTRER+R Sbjct: 446 EDPLYDTHQQALKHQIEEAMQGLNYREREILRLRYGLTDGYAYTLEEVGKIFSVTRERVR 505 Query: 589 QIEAKALRKLRHPSRSEVLRSFLD 612 QIE KA+RKL+ P R+ L SFLD Sbjct: 506 QIETKAVRKLQQPYRNRSLTSFLD 529 >UniRef50_A6G972 RNA polymerase sigma factor n=2 Tax=Bacteria RepID=A6G972_9DELT Length = 547 Score = 374 bits (961), Expect = e-102, Method: Composition-based stats. Identities = 226/548 (41%), Positives = 303/548 (55%), Gaps = 40/548 (7%) Query: 105 MGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSD--LI 162 MGT+ LLTREGEI++AKRIE G N+V V P AI Y+ + DRVE R+ D +I Sbjct: 1 MGTISLLTREGEIEVAKRIEAGENKVIDIVLRSPIAIPYVFDLCDRVERSLVRVKDAFVI 60 Query: 163 TGFVDPNAEEDLAPTATHVGS------------ELSQEDLDDDEDEDEEDGDDDSADDDN 210 D + + + +E +E E D +A + Sbjct: 61 PAKNDEKRPGEADGPTGQEAAVENMKVQLKRLRKQHRELEKIEERVAELDAQATAASEAE 120 Query: 211 SIDPELAREKFAE---------------------LRAQYVVTRDTIKAKGRSHATAQEEI 249 E V + A ++ Sbjct: 121 RPAAEPVALVVDNGDAPSEAASAGAAPAAAYAAPSTPPAEVALVEGGKDDGARAELDKKH 180 Query: 250 LKLSE----VFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITL 305 +L E FRL K + + + ++ VR R ++ C + + + Sbjct: 181 HELREATVGTMLDFRLSRKSIEEMSEELSETVETVRRALRELLD-CERRAGVDLDELRST 239 Query: 306 FTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRM 365 F G + +LH++ + A ++++Q+E+ETG++ + + + + Sbjct: 240 FEGVRLREQEEFKLCRRLGLHPWELHELITRMKVATKRIRQVEQETGVSADNLVALYDSL 299 Query: 366 SIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGY 425 + + AK E+VEANLRLV+SIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY+RGY Sbjct: 300 TKARREREAAKAELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGY 359 Query: 426 KFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAE 485 KFSTYATWWIRQAITR+I+DQARTIR+PVHMIE+INKL R +RQ++QE GREPT +E+AE Sbjct: 360 KFSTYATWWIRQAITRAISDQARTIRVPVHMIESINKLIRTTRQLVQEFGREPTHQEIAE 419 Query: 486 RMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATH 545 +M MP +K+R +L+IAKEPIS+ETP+G+D DS LGD IED P L T Sbjct: 420 KMNMPVEKVRSILRIAKEPISLETPLGEDGDSSLGDLIEDKNALDPGSGVVERHLGDETR 479 Query: 546 DVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSE 605 LA LT RE K+LR+RFGI +D+TLEEVG+ F VTRERIRQIEAKAL KLR R++ Sbjct: 480 RALASLTPREEKILRLRFGIGEASDHTLEEVGRDFSVTRERIRQIEAKALSKLRKADRAK 539 Query: 606 VLRSFLDD 613 LR F++D Sbjct: 540 QLREFVED 547 >UniRef50_Q1NY91 RNA polymerase sigma factor n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NY91_9DELT Length = 540 Score = 371 bits (952), Expect = e-101, Method: Composition-based stats. Identities = 205/562 (36%), Positives = 291/562 (51%), Gaps = 80/562 (14%) Query: 54 QVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTR 113 Q+ +E D A++ A + A + +S + DPV++Y++EMG+V LL+ Sbjct: 57 QLTDEDGDEHAPAAAQDEASDGAGADDEPYVWPGDSGGDQV-DPVKVYLQEMGSVPLLST 115 Query: 114 EGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEED 173 E EI +A+ +EA E + + Sbjct: 116 EEEIAVAR----------------------------EIEAGELLIQQALL---------- 137 Query: 174 LAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRD 233 AP A S+L + + + + D AD ++ E + Sbjct: 138 TAPPAIAYLSKLIDKVMAGNRQLSDLLRGLDEAD----------KKTMGETAKRLHWQLT 187 Query: 234 TIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVE 293 R +A E+L + Q R + R+ + +L E Sbjct: 188 EADRLARENAALNRELLAPATNRNQ--------------ARQLKTRITRNNKARAQLFAE 233 Query: 294 QCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRAL--QKLQQIEEET 351 + S A A + E L+ + A QQ + Sbjct: 234 ---------------DRFSSKHLQAMTARLGRFEESLNRQRAALSEAELPAWRQQCLQNH 278 Query: 352 GLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIG 411 GL E + +I ++ G+ ++ AK +V+ANLRLV+S+AKKY RGLQ LDLIQEGNIG Sbjct: 279 GLDQEGLAEIQAGIARGQEVSQEAKNRLVQANLRLVVSVAKKYAGRGLQLLDLIQEGNIG 338 Query: 412 LMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQML 471 LMKAV+KFEYRRGYKFSTYATWWIRQA+TR+IADQ RTIRIPVHMI+TIN++ + +++ Sbjct: 339 LMKAVEKFEYRRGYKFSTYATWWIRQAVTRAIADQGRTIRIPVHMIDTINRMLKGAKEFQ 398 Query: 472 QEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELP 531 ++ GREPTP+E+A+ + + K++ VLKIAKEP+S++TP+G+ DS L DFIEDT P Sbjct: 399 RQHGREPTPDEMAQHLGVEVAKVKSVLKIAKEPLSLDTPVGNSNDSFLADFIEDTEAASP 458 Query: 532 LDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIE 591 ++ E+L++ VL L+ RE VLR+RFG+D D TLEEVG+ F VTRERIRQIE Sbjct: 459 DEATIYENLQSNLRRVLKTLSPREEMVLRLRFGLDTAMDLTLEEVGENFAVTRERIRQIE 518 Query: 592 AKALRKLRHPSRSEVLRSFLDD 613 AKAL+KL+HP+R L SF DD Sbjct: 519 AKALKKLKHPARRNQLSSFYDD 540 >UniRef50_Q02AX1 RNA polymerase sigma factor n=2 Tax=Acidobacteria RepID=Q02AX1_SOLUE Length = 518 Score = 370 bits (950), Expect = e-101, Method: Composition-based stats. Identities = 196/539 (36%), Positives = 300/539 (55%), Gaps = 60/539 (11%) Query: 73 DEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQC 132 D +AA A + + E T DPVR+Y+REMG V LLTREGE+D+A+R+E G ++Q Sbjct: 37 DPEAAHEADFLHPAPVEESIYTDDPVRVYLREMGAVPLLTREGEVDLARRMERGKLRMQK 96 Query: 133 SVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDD 192 +++ +++ D+++ + ++ Sbjct: 97 AISRSALVQRVVVDVADQLKRANIEIESVVD----------------------------- 127 Query: 193 DEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKL 252 GD + + A + FA++ + + + +++ +L Sbjct: 128 -------LGDVEEGSPADVKVRNEAAKHFADIVVLHKKLQQLEDKVEATPLASKKPRKRL 180 Query: 253 SEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETS 312 +L + + + R ++ +E F Sbjct: 181 CA-----KLNRSKVETSLAIRRAPFRLIKWKE-----------------FAREIERAVDE 218 Query: 313 DTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKA 372 + ++ I + S + + +++++ E G T+ ++K + GEA+A Sbjct: 219 ISHLDSEIKRLEVRSNPTQQLR--LRELKREIKKREIAAGATLPELKHSLTVIRHGEAEA 276 Query: 373 RRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT 432 RAKK++VEANLRLV+S+AKKY NRGL LDLIQEGNIGLM+A DKFEYRRGYKFSTYAT Sbjct: 277 ERAKKDLVEANLRLVVSVAKKYVNRGLHLLDLIQEGNIGLMRAADKFEYRRGYKFSTYAT 336 Query: 433 WWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPED 492 WWIRQAITR+IADQ+RTIRIPVHM E++NK R +R++ +E+GR PT +E+ RM +P + Sbjct: 337 WWIRQAITRAIADQSRTIRIPVHMNESMNKFLRATRELEKELGRTPTNDEIGRRMDIPVE 396 Query: 493 KIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLT 552 K++K+ I+++P+S+ETP+G D +S LGD IED + P+D+ ++R T +L L+ Sbjct: 397 KVQKLKTISRDPVSLETPVGRDGESALGDLIEDRWVGSPVDAVIESNVRDETAGILKTLS 456 Query: 553 AREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 +E KV+RMRFGI ++TLEE+G++FDVTRERIRQIEAKALR+LR P R+ LR+ + Sbjct: 457 PKEEKVIRMRFGIGCEREHTLEEIGQEFDVTRERIRQIEAKALRQLRAPERARRLRALM 515 >UniRef50_Q6AQ51 RNA polymerase sigma factor n=1 Tax=Desulfotalea psychrophila RepID=Q6AQ51_DESPS Length = 534 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 202/558 (36%), Positives = 304/558 (54%), Gaps = 64/558 (11%) Query: 59 APDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTT---DPVRMYMREMGTVELLTREG 115 +P + ++A + ++ A + +SS + + G +T D + +YMREMG+++LL + Sbjct: 38 SPVLGEPLVAGSDLLKEGVRAPKRRISSSQRKQGDSTAAADSMNIYMREMGSLKLLKYDD 97 Query: 116 EIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLA 175 E +A+ IE G QVQ +V + A+ LL+ + + ++S + G P+A+ D+ Sbjct: 98 ERKLAQTIEKGKKQVQFAVLQSTLAMPILLQMKETIVENPGKISLFVGGI--PDAQFDVI 155 Query: 176 PTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTI 235 A V Q + D + + Sbjct: 156 AEACDVFLANWQTCVGLD-----------------------------------GQRKKYL 180 Query: 236 KAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQC 295 K +A L + + + + + F+ DRV + E + + + Sbjct: 181 KKYLSPSLSADAREKLLFNILQCGKQIAELFE----------DRVLSSE--YVNMVAQAA 228 Query: 296 KMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTI 355 + K F F IA E+ EE+ R + Q E+G ++ Sbjct: 229 EDLSKRFRK----------IFVELIAGEGDLPEEEMRSPEELERLVD--LQFIRESGSSL 276 Query: 356 EQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKA 415 + + ++ + + G ++ AK+ +V ANLRLVIS++K++ NRGLQF DLIQEGNIGLMKA Sbjct: 277 QSLNELLKEVEEGRFISKEAKEALVRANLRLVISVSKRFVNRGLQFSDLIQEGNIGLMKA 336 Query: 416 VDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMG 475 V+KF+YRRG+KFSTYATWWIRQ+ITR IADQ RTIR+PVHMIETIN++ R+S+ E Sbjct: 337 VEKFDYRRGFKFSTYATWWIRQSITRGIADQGRTIRLPVHMIETINRMLRVSKDFYLEEH 396 Query: 476 REPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSA 535 REP+ EE+A ++ DK++ LKIAK+ IS++TP+GDD +++LGDFI D P A Sbjct: 397 REPSVEEVAGQLGTEVDKVKSALKIAKDAISLDTPVGDDGETYLGDFIVDKNCLGPDGFA 456 Query: 536 TTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKAL 595 SL+ VL+ L+ RE KVL+MR+GI +YTLEEVG+ F+VTRERIRQIEA+A+ Sbjct: 457 MVASLKECLSQVLSSLSPREEKVLKMRYGILEKREYTLEEVGRCFNVTRERIRQIEAQAI 516 Query: 596 RKLRHPSRSEVLRSFLDD 613 KL+HPSR L+ F+ D Sbjct: 517 SKLKHPSRCGDLKVFMTD 534 >UniRef50_A1S281 RNA polymerase sigma factor n=7 Tax=Bacteria RepID=A1S281_SHEAM Length = 969 Score = 352 bits (903), Expect = 3e-95, Method: Composition-based stats. Identities = 178/577 (30%), Positives = 293/577 (50%), Gaps = 41/577 (7%) Query: 38 SDQIEDIIQMINDMGIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDP 97 ++++ I Q++ G + + + + L A++ ++ A + + ++ + +P Sbjct: 424 AEKVFYIRQVLEVHGCVIDDHTFEGESL--ADSVYEDHDAASIDDAMLLLDDLLYARDEP 481 Query: 98 VRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYP---EAITYLLEQYDRVEAE 154 + Y + ELLTRE E+D R E + +++E P E + +L ++ R Sbjct: 482 MGYYFASLPGKELLTREQEVDNGMRREAARLAIMEALSEVPFICELLAHLCQEALREHNP 541 Query: 155 EARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDP 214 E L ++ AE + P+ V + + D+++ D + D+ +D Sbjct: 542 EQSLQKVV-------AELNTLPSEDFVEIKRAVSLFMDEQE--------DGDEPDDFVDT 586 Query: 215 ELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMR 274 L+ V+ ++ H Q + F+ L + L+ ++ Sbjct: 587 YPYEAIVGALKTFLNVSGES------EHPGVQ-------DTFRSIVLTEDALNILIKALY 633 Query: 275 VMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVS 334 +D+V + ++ L + K+P+K + + +KL + Sbjct: 634 ESIDKVSDIKTELVNLYTREIKLPRKT-AESVAEQKMGRELISQLKTEYPLCEDKLERHA 692 Query: 335 EEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKY 394 ++R ++Q I ++TG+ + ++DI ++ + A+ EM+ NLRLV+S+A KY Sbjct: 693 GAINRLQAQMQNINQKTGIDLYSLQDIGSKIKKLQRDISAARDEMITFNLRLVLSVANKY 752 Query: 395 TNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPV 454 RGL+ DL+QEGNIGLMKAV+KF++R+G+KFSTYATWWIRQAITR+IADQAR IRIPV Sbjct: 753 LGRGLELADLVQEGNIGLMKAVEKFDHRKGFKFSTYATWWIRQAITRAIADQARIIRIPV 812 Query: 455 HMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDD 514 H+ E++NKL S+ + + GR P EL+ + MPE K+ + +I P+ + Sbjct: 813 HVNESLNKLISASKVLTHKFGRGPKISELSLILSMPETKVENLKQILVM-----EPVAEA 867 Query: 515 EDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLE 574 + + G D P + + D+L GLT +E KVL +RFGI+ T+ TLE Sbjct: 868 DHNTNG--YVDWAAMSPEEEIIDDDRDTNIKDLLKGLTDKEKKVLELRFGINAATELTLE 925 Query: 575 EVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 EVG+QFDVTRERIRQIEAK+L+KL H SRS L F Sbjct: 926 EVGQQFDVTRERIRQIEAKSLKKLAHTSRSSHLAIFF 962 >UniRef50_UPI0001AF1456 RNA polymerase sigma factor n=2 Tax=Streptomyces RepID=UPI0001AF1456 Length = 430 Score = 349 bits (896), Expect = 2e-94, Method: Composition-based stats. Identities = 138/306 (45%), Positives = 205/306 (66%), Gaps = 4/306 (1%) Query: 307 TGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMS 366 ++ + + + + +++ V L EE+ LT + + + Sbjct: 129 PSSDLFRQYLREIGRIPLLTAAEEVELARRVEAGLFA----EEKLRLTPDLDSRLAHDLD 184 Query: 367 IGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYK 426 R AK+ ++EANLRLV+S+AK+Y RGL LDL+QEGN+GL++AV+KF+Y RGYK Sbjct: 185 RLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYK 244 Query: 427 FSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAER 486 FSTYATWWIRQA++R++ADQARTIR+PVH++E IN++ R+ R+MLQE GREPTPEE+A Sbjct: 245 FSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGREPTPEEVAAH 304 Query: 487 MLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHD 546 + +P +++ +VL++A+EP+S+ P+G+++D LGD IED P++SA LR Sbjct: 305 LDLPPERVGEVLRLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFLLLREHLEA 364 Query: 547 VLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEV 606 VL+ L RE KV+++R+G+ TLEE+G+ F VTRERIRQIE+K L KLR + ++ Sbjct: 365 VLSTLGERERKVVQLRYGLVDGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHAFADQ 424 Query: 607 LRSFLD 612 LR +LD Sbjct: 425 LRGYLD 430 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 34/92 (36%) Query: 73 DEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQC 132 D A+ G ++D R Y+RE+G + LLT E+++A+R+E G+ + Sbjct: 109 DAREPAEPAETPPPRPETGGPSSDLFRQYLREIGRIPLLTAAEEVELARRVEAGLFAEEK 168 Query: 133 SVAEYPEAITYLLEQYDRVEAEEARLSDLITG 164 + V LI Sbjct: 169 LRLTPDLDSRLAHDLDRLVVMGRMAKRRLIEA 200 >UniRef50_P0A603 RNA polymerase sigma factor rpoD n=66 Tax=Actinobacteria (class) RepID=RPOD_MYCBO Length = 528 Score = 345 bits (886), Expect = 2e-93, Method: Composition-based stats. Identities = 167/440 (37%), Positives = 245/440 (55%), Gaps = 6/440 (1%) Query: 173 DLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTR 232 P A + D +D D EE + D + D +L + V Sbjct: 95 ATKPRAPKDAQHEAATDPEDALDSVEELDAEPDLDVEPGEDLDLDAADLNLDDLEDDVAP 154 Query: 233 DTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCV 292 D E++ + V P Q + ++ + + Sbjct: 155 DADDDLDSGDDEDHEDLEAEAAV------APGQTADDDEEIAEPTEKDKASGDFVWDEDE 208 Query: 293 EQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETG 352 + + L ++ + + +E+ ++++ + L Q + E + Sbjct: 209 SEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSE 268 Query: 353 LTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL 412 + R M RAK ++EANLRLV+S+AK+YT RG+ FLDLIQEGN+GL Sbjct: 269 RGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGL 328 Query: 413 MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQ 472 ++AV+KF+Y +GYKFSTYATWWIRQAITR++ADQARTIRIPVHM+E INKL RI R++LQ Sbjct: 329 IRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQ 388 Query: 473 EMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPL 532 ++GREPTPEELA+ M + +K+ ++ + A+EPIS++ IGD+ DS LGDFIED+ + + Sbjct: 389 DLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAV 448 Query: 533 DSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEA 592 D+ + L+ VL L+ REA V+R+RFG+ TL+E+G+ + VTRERIRQIE+ Sbjct: 449 DAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIES 508 Query: 593 KALRKLRHPSRSEVLRSFLD 612 K + KLRHPSRS+VLR +LD Sbjct: 509 KTMSKLRHPSRSQVLRDYLD 528 Score = 59.3 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 52/104 (50%), Gaps = 11/104 (10%) Query: 57 EEAPDADDLMLAENTADE---DAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTR 113 ++ + + + + + D E+ A + ++E+ + D VR Y++++G V LL Sbjct: 184 DDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNA 243 Query: 114 EGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEAR 157 E E+++AKRIE G + +T L E+ +++ A + R Sbjct: 244 EEEVELAKRIEAG--------LYATQLMTELSERGEKLPAAQRR 279 >UniRef50_C4G0D3 RNA polymerase sigma factor n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G0D3_ABIDE Length = 409 Score = 345 bits (884), Expect = 4e-93, Method: Composition-based stats. Identities = 157/268 (58%), Positives = 209/268 (77%), Gaps = 3/268 (1%) Query: 343 KLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL 402 L++I L++++ ++ ++++ G+ A + E+NLRLV+SIAKKY RGL FL Sbjct: 142 YLKEIGNYPLLSMDEEVELAKKIAEGDQ---YATDRLTESNLRLVVSIAKKYVGRGLSFL 198 Query: 403 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 462 DLIQEGN+GL+KAVDKF+Y +GYKFSTYATWWIRQAITRSIADQ+RTIRIPVHM E INK Sbjct: 199 DLIQEGNLGLIKAVDKFDYSKGYKFSTYATWWIRQAITRSIADQSRTIRIPVHMSEVINK 258 Query: 463 LNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDF 522 RISR +LQE+GREPT EE+A+ M +P +K+R+++KI+ +PIS++TPIG+++DSHLGDF Sbjct: 259 AYRISRSLLQELGREPTEEEIAKEMNLPVEKVREIMKISADPISLDTPIGEEDDSHLGDF 318 Query: 523 IEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDV 582 I+D T+ P D+A L+ +L L+ RE +VL +RFG+ TLEEVGK+F+V Sbjct: 319 IKDDTIMGPEDAAAYTMLQDQIQKLLTTLSEREQRVLILRFGLLDGRTRTLEEVGKEFNV 378 Query: 583 TRERIRQIEAKALRKLRHPSRSEVLRSF 610 TRERIRQIEAKALRKLRHP+R+ +LR F Sbjct: 379 TRERIRQIEAKALRKLRHPNRARMLRGF 406 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 69/162 (42%), Gaps = 6/162 (3%) Query: 2 EQNPQSQLKLLVTRGKEQGYLTYAE-VNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP 60 + + ++L+ LV ++ + ++ +ND+ +DS E I + GI +M Sbjct: 45 KDDFLTKLEGLVEIARKNKDVIESDKLNDYFKSLNIDSGHYEKIYDYLESNGITIMNIN- 103 Query: 61 DADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA 120 D + + + A + + + DPV++Y++E+G LL+ + E+++A Sbjct: 104 --DIDDDLFDDTLPEVDDEADLEIGDDITLSIMSDDPVKIYLKEIGNYPLLSMDEEVELA 161 Query: 121 KRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLI 162 K+I +G + E + ++ + DLI Sbjct: 162 KKIAEGDQYATDRLTES--NLRLVVSIAKKYVGRGLSFLDLI 201 >UniRef50_D1C1P9 RNA polymerase sigma factor n=6 Tax=Chloroflexi RepID=D1C1P9_SPHTD Length = 538 Score = 343 bits (881), Expect = 9e-93, Method: Composition-based stats. Identities = 159/301 (52%), Positives = 214/301 (71%) Query: 312 SDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAK 371 S ++ + + L +E+ R + EE L + R + Sbjct: 238 SREELEESLRRRRIEYDLLPSPIQELIRPVDAFPTDEEVWELLRRDEAALQARWEEFVVR 297 Query: 372 ARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYA 431 A+K++ EANLRLV+S+AKKY RG+ LDL+QEGN+GL++AV+KF++ +G+KFSTYA Sbjct: 298 GDIARKKLTEANLRLVVSVAKKYGGRGMSMLDLVQEGNLGLIRAVEKFQHHKGFKFSTYA 357 Query: 432 TWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPE 491 TWWIRQAITR+IADQARTIRIPVHM+E IN+L R SR++ QE+GREPT EE+A M +P Sbjct: 358 TWWIRQAITRAIADQARTIRIPVHMVEQINRLIRTSRRLQQELGREPTSEEIAAEMGLPP 417 Query: 492 DKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGL 551 DK+R++LKI++EP+S+E PIG++EDS+LGDFIED+ P D+A+ + L+ DVL L Sbjct: 418 DKVREILKISQEPVSLEMPIGEEEDSNLGDFIEDSKALAPSDAASLKLLKEQVDDVLGSL 477 Query: 552 TAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 RE +VL +RFG+D TLEEVG++F VTRERIRQIEAKALRKLRHPSRS+ LR +L Sbjct: 478 GDRERRVLELRFGLDDGRTRTLEEVGREFGVTRERIRQIEAKALRKLRHPSRSKKLRDYL 537 Query: 612 D 612 + Sbjct: 538 E 538 Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 52/264 (19%), Positives = 104/264 (39%), Gaps = 10/264 (3%) Query: 2 EQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPD 61 ++ + ++ ++ R +EQGYL+ E+ D + + ++ I + +M + V++ A D Sbjct: 35 DRADELAIRRIIERAREQGYLSAEELAD-VASAPGGAAAVDAITSQLAEMNVPVLDPAED 93 Query: 62 ADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAK 121 A DL + A E + + LS V+ DPVR+Y+RE+G V+LLT E E+ +A+ Sbjct: 94 APDL--PDVAAVEADNDLFSTELSDVDLSGVSLDDPVRIYLREIGRVQLLTGEQEVALAQ 151 Query: 122 RIEDG------INQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLA 175 +E G ++Q + P A Y + L+ P+ Sbjct: 152 AMERGDYIFRLQQELQGGNGDRPSAAGIGWTVYRTLREG-WPLTIAFYRAAFPDQPATTK 210 Query: 176 PTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTI 235 L++E + EE G +++ + + + + D Sbjct: 211 TRVLAAVLPLTEEMEPAIQAVGEEFGVSREELEESLRRRRIEYDLLPSPIQELIRPVDAF 270 Query: 236 KAKGRSHATAQEEILKLSEVFKQF 259 + + L +++F Sbjct: 271 PTDEEVWELLRRDEAALQARWEEF 294 >UniRef50_B9CNX8 RNA polymerase sigma factor n=3 Tax=Actinobacteria (class) RepID=B9CNX8_9ACTN Length = 455 Score = 343 bits (880), Expect = 1e-92, Method: Composition-based stats. Identities = 156/299 (52%), Positives = 219/299 (73%) Query: 315 WFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARR 374 + ++ + + +++ ++ + Q++E+ IE + RR+ E Sbjct: 157 YLKEIGKVDLLTASEEVNLAMKIEAGTEATQKLEDFEDEKIELSRAEQRRLMRIEQVGLD 216 Query: 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 434 AK++++ ANLRLV+SIAK+Y RG+ FLDLIQEGN+GL++AV+KF+Y +G+KFSTYATWW Sbjct: 217 AKQQLISANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWW 276 Query: 435 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKI 494 IRQAITR+IADQARTIRIPVHM+ETINKL R+ RQ+LQ++GR+PTPEE+ M M D++ Sbjct: 277 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPTPEEIGAEMGMSPDRV 336 Query: 495 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAR 554 R++ KI++EP+S+ETPIG++EDS LGDFIED+T P D+A+ LR VL GL R Sbjct: 337 REIQKISQEPVSLETPIGEEEDSQLGDFIEDSTAIAPPDAASDSMLREQLEQVLDGLADR 396 Query: 555 EAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 E KV++ RFG++ TLEEVG++F VTRERIRQIE+K L KLRHPSRS L+ ++++ Sbjct: 397 ERKVIKFRFGLEDGRPRTLEEVGREFGVTRERIRQIESKTLAKLRHPSRSSRLKDYMEE 455 Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 53/388 (13%), Positives = 117/388 (30%), Gaps = 45/388 (11%) Query: 1 MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP 60 + LV K G ++ ++ L E V ++ + + + +++ + Sbjct: 12 LPDELAKVADELVISAKGSGSISEDDIQIALQEVDVSDSELSLLYETLRSKNVEITSVSD 71 Query: 61 ---------------------------------------------DADDLMLAENTADED 75 + + + Sbjct: 72 GSVEFSDTVSDDDFVSADDDFDDAPLDDEDEDDEDAGVLNEARQVKEALRSVPKAKTSKP 131 Query: 76 AAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVA 135 + A+ + S + T DPVRMY++E+G V+LLT E+++A +IE G Q Sbjct: 132 KRSSRARARRADTSTVMLTGDPVRMYLKEIGKVDLLTASEEVNLAMKIEAGTEATQKLED 191 Query: 136 EYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDED 195 E I + R+ E D + N ++ +VG + DL + + Sbjct: 192 FEDEKIELSRAEQRRLMRIEQVGLDAKQQLISANLRLVVSIAKRYVGRGMLFLDLIQEGN 251 Query: 196 EDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEV 255 + A + + + + +++++ Sbjct: 252 LGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQ 311 Query: 256 FKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTW 315 Q + + M + DRVR +++ + + + ++ L E S Sbjct: 312 LLQDLGRDPTPEEIGAEMGMSPDRVREIQKISQEPVSLETPIGEEEDSQLGDFIEDSTAI 371 Query: 316 FNAAIAMNKPWSEKLHDVSEEVHRALQK 343 A + E+L V + + +K Sbjct: 372 APPDAASDSMLREQLEQVLDGLADRERK 399 >UniRef50_Q47RL2 RNA polymerase sigma factor n=3 Tax=Bacteria RepID=Q47RL2_THEFY Length = 388 Score = 342 bits (878), Expect = 2e-92, Method: Composition-based stats. Identities = 142/321 (44%), Positives = 213/321 (66%), Gaps = 7/321 (2%) Query: 297 MPKKNFITLFTGNETSDT----WFNAAIAMNKPWSEKLHDVSEEVHRALQKLQ--QIEEE 350 + + +F +S + + +E+ ++++ + L Q + Sbjct: 68 VDRDDFAEHPETRTSSGDIVHAYLREIGRVPLLTAEEEVELAKAIEIGLYAEQKLRAART 127 Query: 351 TGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNI 410 + + + ++ + + AK+ ++E+NLRLV+S+AK+Y RGL LDLIQEGN+ Sbjct: 128 GPVPAQYSPEWFEDLNELVREGKLAKRRLIESNLRLVVSVAKRYLGRGLALLDLIQEGNL 187 Query: 411 GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQM 470 GL++AV+KF+Y RGYKFSTYATWWIRQAITR+IADQARTIR+PVHM+E+IN+L R R++ Sbjct: 188 GLIRAVEKFDYTRGYKFSTYATWWIRQAITRAIADQARTIRVPVHMVESINRLARTRRRL 247 Query: 471 LQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLEL 530 QE+GREPT EL+ + + D++ ++ ++++EPIS+ TPIG +EDS GDFIEDT Sbjct: 248 HQELGREPTLHELSRELNVDHDRVVEIHRVSQEPISLHTPIG-EEDSAFGDFIEDTDAVP 306 Query: 531 PLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQI 590 P+++A L+ VL GL+ RE +V+ +RFG++ +TLEEVG++F VTRERIRQI Sbjct: 307 PVEAAAFVMLQDQLAQVLGGLSEREQRVITLRFGLEDGKPHTLEEVGRKFGVTRERIRQI 366 Query: 591 EAKALRKLRHPSRSEVLRSFL 611 E+K L KLR PSR+ +LR +L Sbjct: 367 ESKTLAKLRQPSRARILRDYL 387 Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 9/117 (7%) Query: 46 QMINDMGIQVMEEAPDADDLMLAENTADE-------DAAEAAAQVLSSVESEIGRTTDPV 98 + D +++E A E + + + + D V Sbjct: 28 SSMRDTAAEIVERRTPAGPAAAVERSGGPPVEAVGGEPEYVDRDDFAEHPETRTSSGDIV 87 Query: 99 RMYMREMGTVELLTREGEIDIAKRIEDG--INQVQCSVAEYPEAITYLLEQYDRVEA 153 Y+RE+G V LLT E E+++AK IE G Q + P Y E ++ + Sbjct: 88 HAYLREIGRVPLLTAEEEVELAKAIEIGLYAEQKLRAARTGPVPAQYSPEWFEDLNE 144 >UniRef50_C7GZY7 RNA polymerase sigma factor n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZY7_9FIRM Length = 447 Score = 342 bits (876), Expect = 4e-92, Method: Composition-based stats. Identities = 180/450 (40%), Positives = 257/450 (57%), Gaps = 16/450 (3%) Query: 167 DPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRA 226 D N +D+ T E +++ D D D K +L+ Sbjct: 10 DENPGQDIDVEITEDLEAELAELAATLAEDESVDIDLDGDLGVAMFKKVDLALKSGKLKT 69 Query: 227 QYVVT-RDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQER 285 + +I + ++ + E+ K+ + K+F+ ++ +R Sbjct: 70 EEGKLPIKSIYTLCDEIPFDENDVECMYELLKENGIGIKEFEAAEENIAKNGERADKV-V 128 Query: 286 LIMKLCVEQCKM--PKKNFITLFTGNETSDTWFNAAIAMNKPWS-EKLHDVSEEVHRALQ 342 I ++ + P K ++ +A + K +++ E + R + Sbjct: 129 DIRRIVRTSIGIDDPVKMYLKEIGQVPLLTREEEKILATQVKHALAKQNEIRERLERLKE 188 Query: 343 KLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL 402 ++E L E +D +A ++ EANLRLV+SIAK + +RG+ FL Sbjct: 189 GSATYKKEMKLLDEYKQD-----------YNKAMHQLCEANLRLVVSIAKNHKDRGMHFL 237 Query: 403 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 462 DLIQEGN+GLMKAVDKF+ R +KFSTYATWWIRQAITR+IADQARTIRIPVHM+ETI+K Sbjct: 238 DLIQEGNLGLMKAVDKFDVDRNFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETIHK 297 Query: 463 LNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDF 522 L RISR +LQE+GREP PEE+A+ M + +K+R +L+I++EP+S+E PIG++EDSHLGDF Sbjct: 298 LTRISRTLLQELGREPKPEEIAKEMDITTEKVRDILRISQEPVSLEKPIGEEEDSHLGDF 357 Query: 523 IEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDV 582 I DT + PLD A + LR +VL L RE VL++RFG+ TLEEVGKQFDV Sbjct: 358 IPDTEVPSPLDVAFSSMLRDELLEVLNTLGERERNVLKLRFGLVDGKQRTLEEVGKQFDV 417 Query: 583 TRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 TRERIRQIE+KA+RKL+HP+ S+ LR ++D Sbjct: 418 TRERIRQIESKAIRKLKHPNMSKKLRDYID 447 Score = 67.4 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 58/139 (41%), Gaps = 9/139 (6%) Query: 18 EQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLAENTADEDAA 77 E+G L + E D + +E + +++ + GI + E +++ AD+ Sbjct: 70 EEGKLPIKSIYTLCDEIPFDENDVECMYELLKENGIGIKEFEAAEENIAKNGERADKV-- 127 Query: 78 EAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA---KRIEDGINQVQCSV 134 + + DPV+MY++E+G V LLTRE E +A K N+++ + Sbjct: 128 ----VDIRRIVRTSIGIDDPVKMYLKEIGQVPLLTREEEKILATQVKHALAKQNEIRERL 183 Query: 135 AEYPEAITYLLEQYDRVEA 153 E ++ ++ Sbjct: 184 ERLKEGSATYKKEMKLLDE 202 >UniRef50_A7NGG2 RNA polymerase sigma factor n=15 Tax=Chloroflexi (class) RepID=A7NGG2_ROSCS Length = 405 Score = 341 bits (875), Expect = 5e-92, Method: Composition-based stats. Identities = 139/304 (45%), Positives = 209/304 (68%), Gaps = 5/304 (1%) Query: 309 NETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIG 368 ++ + +N +++ ++++V R Q ++++ +E+++ + Sbjct: 107 DDPVRVYLREIGRVNLLTAQEEIMLAQQVERGEQANERLQNGDYTPVERLQ-----LHRW 161 Query: 369 EAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS 428 + + A++ +++ANLRLV+SIAKKY RG+ LDLIQEGNIGLM+A +KF+YR+GYKFS Sbjct: 162 VQEGQAARERLIQANLRLVVSIAKKYLGRGMSLLDLIQEGNIGLMRATEKFDYRKGYKFS 221 Query: 429 TYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERML 488 TYATWWIRQAITR IADQ+RTIR+PVH+ ETIN++ R S ++ Q GR+PTP+E+A + Sbjct: 222 TYATWWIRQAITRVIADQSRTIRLPVHVGETINRVMRTSNRIQQTTGRDPTPDEIALELG 281 Query: 489 MPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVL 548 +P +K+R+VL+ A++ IS+ETPIG + DS L DFIED P++SA++ LR L Sbjct: 282 IPVEKVRRVLEAARQTISLETPIGPEGDSVLADFIEDGKGATPMESASSHILREQIDSAL 341 Query: 549 AGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLR 608 L RE +++++R+G+ TLEEVG++F +TRERIRQIEA+ LRKLRHP LR Sbjct: 342 EKLPERERRIIQLRYGLYDGHYRTLEEVGREFGITRERIRQIEARVLRKLRHPHYGRGLR 401 Query: 609 SFLD 612 +L+ Sbjct: 402 GYLE 405 Score = 57.3 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 2/86 (2%) Query: 75 DAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSV 134 + + + + + DPVR+Y+RE+G V LLT + EI +A+++E G + Sbjct: 87 EQDDDSLDHDLDADVDGIGVDDPVRVYLREIGRVNLLTAQEEIMLAQQVERGEQANERLQ 146 Query: 135 A--EYPEAITYLLEQYDRVEAEEARL 158 P L +A RL Sbjct: 147 NGDYTPVERLQLHRWVQEGQAARERL 172 >UniRef50_B9L102 RNA polymerase sigma factor n=2 Tax=Bacteria RepID=B9L102_THERP Length = 509 Score = 338 bits (868), Expect = 3e-91, Method: Composition-based stats. Identities = 164/454 (36%), Positives = 241/454 (53%), Gaps = 8/454 (1%) Query: 163 TGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFA 222 AE + L + + ++E D +D + Sbjct: 60 DAAETALAELQAEGVPVAIEEALEPDGTSRSWEPEKEADPDLLVEDPVRLYLAEIGRVPL 119 Query: 223 ELRAQYVVTRDTIKAKGRSHATAQ----EEILKLSEVFKQFRLVPKQFDYLVNSMRVMMD 278 Q V ++ + + ++ L +++F + L + + Sbjct: 120 LTAEQEVELGRAVELAEYLDELRRCCGDDPLVLLLAAWERFVTGWPLVERLAQRLPGKRE 179 Query: 279 RVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVH 338 I+ L + ++ E + + E L + + Sbjct: 180 TRTAVLAAILPLRSLPPVLLRQFRGKDGRSVEELEDTLRCRRLEFALFPEPLQRWCDPLE 239 Query: 339 RALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRG 398 R L + + E + A++++ EANLRLV+SIAK+YT RG Sbjct: 240 RRLPPIPPLNELGL----DRTALIAHWQRLRRDGEAARRKLTEANLRLVVSIAKRYTGRG 295 Query: 399 LQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIE 458 L LDLIQEGN+GLM+AVDKF+ +G+KFSTYATWWIRQAITR++AD ARTIR+PVH++E Sbjct: 296 LTLLDLIQEGNLGLMRAVDKFQTHKGFKFSTYATWWIRQAITRALADHARTIRLPVHLVE 355 Query: 459 TINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSH 518 T+N+++R++RQ+ QE+GREPT ELA + MP D++R++L+ A++P+S+E P+G +E+S Sbjct: 356 TLNRVSRVARQLTQELGREPTTSELAAAVNMPLDRLRELLQAAQDPVSLEAPVGQEEEST 415 Query: 519 LGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGK 578 LGDF+ED PLD+A LR +LA LT RE +VL MRFG++ YTLEEVG+ Sbjct: 416 LGDFLEDERAVAPLDAAALSLLREQVQSLLATLTERERRVLAMRFGLEDGQTYTLEEVGR 475 Query: 579 QFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 F VTRER+RQIEAKALRKLRHP R+ LR FL+ Sbjct: 476 AFGVTRERVRQIEAKALRKLRHPQRARALRDFLE 509 Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 57/385 (14%), Positives = 119/385 (30%), Gaps = 45/385 (11%) Query: 11 LLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLAEN 70 ++ + G LT + + D + D E + + G+ V A Sbjct: 34 AILATARLHGRLTREQWLALI--DTLGPDAAETALAELQAEGVPV------------AIE 79 Query: 71 TADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIE--DGIN 128 A E + + DPVR+Y+ E+G V LLT E E+++ + +E + ++ Sbjct: 80 EALEPDGTSRSWEPEKEADPDLLVEDPVRLYLAEIGRVPLLTAEQEVELGRAVELAEYLD 139 Query: 129 QVQCSVAEYPEAITYLLEQYDRVEAE---EARLSDLITGFVDPNAEEDLA--PTATHVGS 183 +++ + P + LL ++R RL+ + G + A P + Sbjct: 140 ELRRCCGDDPLVL--LLAAWERFVTGWPLVERLAQRLPGKRETRTAVLAAILPLRSLPPV 197 Query: 184 ELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYV----------VTRD 233 L Q D +E + + ++ PE + L + Sbjct: 198 LLRQFRGKDGRSVEELEDTLRCRRLEFALFPEPLQRWCDPLERRLPPIPPLNELGLDRTA 257 Query: 234 TIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVE 293 I R + KL+E RLV ++D ++ +M+ V+ Sbjct: 258 LIAHWQRLRRDGEAARRKLTEA--NLRLVVSIAKRYTGRGLTLLDLIQEGNLGLMR-AVD 314 Query: 294 QCKMPKKN---------FITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKL 344 + + K T ++ V+ ++ + L + Sbjct: 315 KFQTHKGFKFSTYATWWIRQAITRALADHARTIRLPVHLVETLNRVSRVARQLTQELGRE 374 Query: 345 QQIEEETGLTIEQVKDINRRMSIGE 369 E + + + + Sbjct: 375 PTTSELAAAVNMPLDRLRELLQAAQ 399 >UniRef50_P52328 RNA polymerase sigma factor rpoD n=191 Tax=Bacteria RepID=RPSD2_BACSP Length = 377 Score = 338 bits (867), Expect = 4e-91, Method: Composition-based stats. Identities = 167/270 (61%), Positives = 214/270 (79%), Gaps = 3/270 (1%) Query: 343 KLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL 402 L++I L+ + ++ +R+ G+ + AK+ + EANLRLV+SIAK+Y RG+ FL Sbjct: 111 YLKEIGRVPLLSADDEVELAKRIMNGDEE---AKRRLAEANLRLVVSIAKRYVGRGMLFL 167 Query: 403 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 462 DLIQEGN+GL+KAV+KF++ +G+KFSTYATWWIRQAITR+IADQARTIRIPVHM+ETINK Sbjct: 168 DLIQEGNMGLIKAVEKFDHNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINK 227 Query: 463 LNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDF 522 L R+SRQ+LQE+GREPTPEE+A M + +K+R+++KIA+EP+S+ETPIG+++DSHLGDF Sbjct: 228 LIRVSRQLLQELGREPTPEEIAAEMELSVEKVREIMKIAQEPVSLETPIGEEDDSHLGDF 287 Query: 523 IEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDV 582 IED P D+A E L+ DVL LT RE VLR+RFG+D TLEEVGK F V Sbjct: 288 IEDQEALTPADAAAYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGV 347 Query: 583 TRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 TRERIRQIEAKALRKLRHPSRS+ L+ FL+ Sbjct: 348 TRERIRQIEAKALRKLRHPSRSKRLKDFLE 377 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 37/152 (24%), Positives = 73/152 (48%), Gaps = 2/152 (1%) Query: 11 LLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLAEN 70 L+ +GK++ L Y ++ + L D +Q+++ + + D+GI+V+ E + + Sbjct: 21 QLIEQGKKRSSLNYKDIMEKLSPFDQDPEQMDEFYEHLGDLGIEVVNENDEEVSNLRQGE 80 Query: 71 TADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQV 130 D + + + DPVRMY++E+G V LL+ + E+++AKRI +G + Sbjct: 81 DHDGNDNDDFNFDDDLSLPPGIKINDPVRMYLKEIGRVPLLSADDEVELAKRIMNGDEEA 140 Query: 131 QCSVAEYPEAITYLLEQYDRVEAEEARLSDLI 162 + +AE + ++ R DLI Sbjct: 141 KRRLAEA--NLRLVVSIAKRYVGRGMLFLDLI 170 >UniRef50_Q04506 RNA polymerase sigma factor rpoD n=15 Tax=Bacteria RepID=RPOD_LACLA Length = 386 Score = 337 bits (865), Expect = 6e-91, Method: Composition-based stats. Identities = 174/377 (46%), Positives = 240/377 (63%), Gaps = 11/377 (2%) Query: 235 IKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQ 294 +KA ++ + + L E + + D L ++ D + + I + Sbjct: 21 VKAYEKAVKSYITKRKPLGEALDE-----EIMDELSVKFGIVDDALEDLFKQIQDAGI-- 73 Query: 295 CKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLT 354 + K+ T + + + V L++I ++ Sbjct: 74 -SIVDKDGNPSPLALVTDEIEKEEVSDTAMDEIVTNVRIDDPVRM---YLKEIGRYPLIS 129 Query: 355 IEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK 414 +++ + + G A AK+ + EANLRLV+SIAK+Y+ RG+QFLDLIQEGN+GLMK Sbjct: 130 LDEETKLAEAIIAGGEGAEFAKQMLAEANLRLVVSIAKRYSGRGMQFLDLIQEGNMGLMK 189 Query: 415 AVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEM 474 AVDKF++ +G+KFSTYATWWIRQAITR+IADQARTIRIPVHM+ETINKL R+ R +LQE+ Sbjct: 190 AVDKFDHTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRNLLQEL 249 Query: 475 GREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDS 534 GR+P+PEE+ + + M DK+R+VLKIA+EP+S+ETPIG+++DSHLGDFIED +E P+D Sbjct: 250 GRDPSPEEIGKELHMAPDKVREVLKIAQEPVSLETPIGEEDDSHLGDFIEDDVIESPVDY 309 Query: 535 ATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKA 594 LR +V+ LT RE VLRMRFG+D +TLE+VGKQF VTRERIRQIEAKA Sbjct: 310 TNRILLREQLDEVMDTLTDREENVLRMRFGLDDGRMHTLEDVGKQFKVTRERIRQIEAKA 369 Query: 595 LRKLRHPSRSEVLRSFL 611 ++KLRHP RS+ LR F+ Sbjct: 370 IKKLRHPRRSKPLRDFM 386 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 70/162 (43%), Gaps = 5/162 (3%) Query: 3 QNPQSQLKLLVTRGKEQGYLTYAEVNDHLP-EDIVDSDQIEDIIQMINDMGIQVMEEAPD 61 + + +K +T+ K G E+ D L + + D +ED+ + I D GI ++++ + Sbjct: 22 KAYEKAVKSYITKRKPLGEALDEEIMDELSVKFGIVDDALEDLFKQIQDAGISIVDKDGN 81 Query: 62 ADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAK 121 L L DE E + R DPVRMY++E+G L++ + E +A+ Sbjct: 82 PSPLAL---VTDEIEKEEVSDTAMDEIVTNVRIDDPVRMYLKEIGRYPLISLDEETKLAE 138 Query: 122 RIEDGINQVQCSVAEYPEA-ITYLLEQYDRVEAEEARLSDLI 162 I G + + EA + ++ R + DLI Sbjct: 139 AIIAGGEGAEFAKQMLAEANLRLVVSIAKRYSGRGMQFLDLI 180 >UniRef50_P52331 RNA polymerase sigma factor rpoD n=60 Tax=Bacteria RepID=RPOD_LISMO Length = 374 Score = 337 bits (864), Expect = 8e-91, Method: Composition-based stats. Identities = 165/270 (61%), Positives = 207/270 (76%), Gaps = 3/270 (1%) Query: 343 KLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL 402 L++I LT ++ + EA AK + EANLRLV+SIAK+Y RG+ FL Sbjct: 108 YLKEIGRVDLLTADEEIALA---KRIEAGDIEAKGRLAEANLRLVVSIAKRYVGRGMLFL 164 Query: 403 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 462 DLIQEGN+GLMKAV+KF++ +G+KFSTYATWWIRQAITR+IADQARTIRIPVHM+ETINK Sbjct: 165 DLIQEGNMGLMKAVEKFDFNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINK 224 Query: 463 LNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDF 522 L R+ R +LQ++GR+P+PEE+ E M +P +K+R++LKIA+EP+S+ETPIG+++DSHLGDF Sbjct: 225 LIRVQRSLLQDLGRDPSPEEIGEEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDF 284 Query: 523 IEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDV 582 IED P D A E L+ DVL LT RE VLR+RFG+D TLEEVG+ F V Sbjct: 285 IEDQDATSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGV 344 Query: 583 TRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 TRERIRQIEAKALRKLRHPSRS+ L+ FL+ Sbjct: 345 TRERIRQIEAKALRKLRHPSRSKQLKDFLE 374 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 7/161 (4%) Query: 3 QNPQSQLKL-LVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPD 61 + Q+K L+ GK++G LTYA++ L +DSDQ+++ ++ + + GI+V ++A D Sbjct: 13 ELSVEQVKEALIEEGKKKGILTYAKIAARLAPFTLDSDQMDEYLEHVGEAGIEVSDDADD 72 Query: 62 ADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAK 121 D + ++ + + + DPVRMY++E+G V+LLT + EI +AK Sbjct: 73 EDPDETELVKEETESFD----LTDMSVPPGVKINDPVRMYLKEIGRVDLLTADEEIALAK 128 Query: 122 RIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLI 162 RIE G + + +AE + ++ R DLI Sbjct: 129 RIEAGDIEAKGRLAEA--NLRLVVSIAKRYVGRGMLFLDLI 167 >UniRef50_P0A4J0 RNA polymerase sigma factor rpoD n=39 Tax=Bacteria RepID=RPOD_STRR6 Length = 369 Score = 337 bits (864), Expect = 9e-91, Method: Composition-based stats. Identities = 171/271 (63%), Positives = 216/271 (79%), Gaps = 3/271 (1%) Query: 343 KLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL 402 L++I LT E+ K++ + G+ + AK+ + EANLRLV+SIAK+Y RG+QFL Sbjct: 102 YLKEIGVVPLLTNEEEKELALAVEAGDIE---AKQRLAEANLRLVVSIAKRYVGRGMQFL 158 Query: 403 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 462 DLIQEGN+GLMKAVDKF+Y +G+KFSTYATWWIRQAITR+IADQARTIRIPVHM+ETINK Sbjct: 159 DLIQEGNMGLMKAVDKFDYSKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINK 218 Query: 463 LNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDF 522 L R R +LQE+G++PTPE++AERM M DK+R++LKIA+EP+S+ETPIG+++DSHLGDF Sbjct: 219 LVREQRNLLQELGQDPTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDF 278 Query: 523 IEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDV 582 IED +E P+D T LR ++L LT RE VLR+RFG+D TLE+VGK F+V Sbjct: 279 IEDEVIENPVDYTTRIVLREQLDEILDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNV 338 Query: 583 TRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 TRERIRQIEAKALRKLR PSRS+ LR F++D Sbjct: 339 TRERIRQIEAKALRKLRQPSRSKPLRDFIED 369 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 44/156 (28%), Positives = 74/156 (47%), Gaps = 9/156 (5%) Query: 8 QLKLLVTRGKEQGYLTYAEVNDHL-PEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLM 66 Q+ + K++G T E+N L +D+D IED++Q I D GI + + + + Sbjct: 14 QVAEFIRNHKQKGTATDDEINASLVIPFTLDADGIEDLLQRIQDAGISITDNEGNPSARV 73 Query: 67 LAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDG 126 L+ E + E + S + DPVRMY++E+G V LLT E E ++A +E G Sbjct: 74 LSNEEEPELSDEDL------IGSTSAKVNDPVRMYLKEIGVVPLLTNEEEKELALAVEAG 127 Query: 127 INQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLI 162 + + +AE + ++ R + DLI Sbjct: 128 DIEAKQRLAEA--NLRLVVSIAKRYVGRGMQFLDLI 161 >UniRef50_B8FTY1 RNA polymerase sigma factor n=3 Tax=Bacteria RepID=B8FTY1_DESHD Length = 372 Score = 336 bits (862), Expect = 1e-90, Method: Composition-based stats. Identities = 166/270 (61%), Positives = 216/270 (80%), Gaps = 3/270 (1%) Query: 343 KLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL 402 L++I LT E+ ++ +RM G+ AK+ + EANLRLV+SIAK+Y RG+ FL Sbjct: 106 YLKEIGRVPLLTAEEEIELAKRMEQGDE---SAKRRLAEANLRLVVSIAKRYVGRGMLFL 162 Query: 403 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 462 DLIQEGN+GL+KAV+KF+Y +G+KFSTYATWWIRQAITR+IADQARTIRIPVHM+ETINK Sbjct: 163 DLIQEGNLGLIKAVEKFDYVKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINK 222 Query: 463 LNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDF 522 L R+SRQ+LQE+GREPTPEE+A +M + +++R+++KIA+EP+S+ETPIG++EDSHLGDF Sbjct: 223 LIRVSRQLLQELGREPTPEEIAVQMDISVERVREIMKIAQEPVSLETPIGEEEDSHLGDF 282 Query: 523 IEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDV 582 I D P ++A+ L+ +VL LT RE KVLR+RFG+D TLEEVG++F V Sbjct: 283 IPDEDAPAPSEAASFILLKEQLEEVLETLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGV 342 Query: 583 TRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 TRERIRQIEAKALRKLRHPSRS+ L+ +L+ Sbjct: 343 TRERIRQIEAKALRKLRHPSRSKKLKDYLE 372 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 50/164 (30%), Positives = 84/164 (51%), Gaps = 5/164 (3%) Query: 2 EQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPD 61 +Q +K L+ +GK++G LTY E+ D L + ++QI+++ + I MGI ++ EA + Sbjct: 4 DQLKVDAVKELIQKGKKKGSLTYREIMDTLQGIELTAEQIDEVYEQIGRMGIDIIPEAGE 63 Query: 62 ADDLMLAENTADEDAAEAAAQVLSSVE---SEIGRTTDPVRMYMREMGTVELLTREGEID 118 + L + +D + + V+ E DPVRMY++E+G V LLT E EI+ Sbjct: 64 VEALEKVTDEIPDDVDDPDVEEEVDVDLSIPEGVGIDDPVRMYLKEIGRVPLLTAEEEIE 123 Query: 119 IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLI 162 +AKR+E G + +AE + ++ R DLI Sbjct: 124 LAKRMEQGDESAKRRLAEA--NLRLVVSIAKRYVGRGMLFLDLI 165 >UniRef50_Q99TT5 RNA polymerase sigma factor rpoD n=78 Tax=Firmicutes RepID=RPOD_STAAN Length = 368 Score = 336 bits (861), Expect = 2e-90, Method: Composition-based stats. Identities = 169/304 (55%), Positives = 223/304 (73%), Gaps = 6/304 (1%) Query: 309 NETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIG 368 NE + + + + + +++ V L++I L+ ++ ++ +R+ G Sbjct: 71 NEKDSSDTDEKLNPSDLSAPPGVKINDPVRM---YLKEIGRVNLLSAQEEIELAKRIEQG 127 Query: 369 EAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS 428 + AK + EANLRLV+SIAK+Y RG+ FLDLIQEGN+GL+KAV+KF++ +G+KFS Sbjct: 128 DE---VAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFS 184 Query: 429 TYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERML 488 TYATWWIRQAITR+IADQARTIRIPVHM+ETINKL R+ RQ+LQ++GR+P PEE+ E M Sbjct: 185 TYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMD 244 Query: 489 MPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVL 548 +P +K+R+VLKIA+EP+S+ETPIG+++DSHLGDFIED + P D A E L+ DVL Sbjct: 245 LPAEKVREVLKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVL 304 Query: 549 AGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLR 608 LT RE VLR+RFG+D TLEEVGK F VTRERIRQIEAKALRKLRHPSRS+ L+ Sbjct: 305 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 364 Query: 609 SFLD 612 F+D Sbjct: 365 DFMD 368 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 15/159 (9%) Query: 4 NPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDAD 63 + K L+ +GK++G+L++ E+ + L +DSDQ++D +ND I ++ E +D Sbjct: 18 TLEDVKKQLIEKGKKEGHLSHEEIAEKLQNFDIDSDQMDDFFDQLNDNDISLVNEKDSSD 77 Query: 64 DLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRI 123 + + DPVRMY++E+G V LL+ + EI++AKRI Sbjct: 78 T-------------DEKLNPSDLSAPPGVKINDPVRMYLKEIGRVNLLSAQEEIELAKRI 124 Query: 124 EDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLI 162 E G + +AE + ++ R DLI Sbjct: 125 EQGDEVAKSRLAEA--NLRLVVSIAKRYVGRGMLFLDLI 161 >UniRef50_D2RM33 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RM33_ACIFE Length = 589 Score = 335 bits (859), Expect = 3e-90, Method: Composition-based stats. Identities = 189/499 (37%), Positives = 263/499 (52%), Gaps = 21/499 (4%) Query: 132 CSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLD 191 E ++ + Y ++ + + D G D E SEL+ + Sbjct: 94 RLQNEDTVSVDEMDAIYSKLAEKNIEVVD--DGAEDEEPETIDEDELKVDESELANLSVP 151 Query: 192 DDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRS--------HA 243 + D+ + K A+ + + +K + Sbjct: 152 EGVIVDDPVRMYLKEIGRVPLLAGDDEIKLAKRADKGNQAKAILKGEKPEGEFPPVNKRL 211 Query: 244 TAQEEILKLSEVFKQ--FRLVPKQFDYLVNSMRVMM--DRVRTQERLIMKLCVEQCKMPK 299 + + + + +E+ Q + + + + D V E ++ + K Sbjct: 212 SIGKLLEEANELLTQEGIWVDKRSVSLAYRKAQTLTGPDHVLDAE-AYQEMVSDFTMDEK 270 Query: 300 KNFITLFTGNETSDTWFNAAIAMNKPWSE-----KLHDVSEEVHRALQKLQQIEEETGLT 354 K L N+ E L ++ V + EE Sbjct: 271 KRLNRLLQENKYKIAHGQKHAQEASEKEEGSSLGTLQELFAVVEDKAAHQKVDEETQKQI 330 Query: 355 IEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK 414 E K NR + E AKK + EANLRLV+SIAK+Y RG+ FLDLIQEGN+GL+K Sbjct: 331 EEGKKRFNRLLHRMEFCGDNAKKCLSEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIK 390 Query: 415 AVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEM 474 AV+KF+Y +G+KFSTYATWWIRQAITR+IADQARTIRIPVHM+ETINKL R+SRQ+LQE+ Sbjct: 391 AVEKFDYNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVSRQLLQEL 450 Query: 475 GREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDS 534 GREPTPEE+A+ M + +++R++ KIA+EP+S+ETPIG++EDSHLGDFIED P D+ Sbjct: 451 GREPTPEEIAKEMDVSVERVREIQKIAQEPVSLETPIGEEEDSHLGDFIEDQEAPSPADA 510 Query: 535 ATTESLRAATHDVL-AGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAK 593 A+ L+ VL L+ARE +VL +RFG+ TLEEVG+ F VTRERIRQIEAK Sbjct: 511 ASYTLLQEQLGKVLQEHLSARERRVLELRFGLMDGRTRTLEEVGQYFGVTRERIRQIEAK 570 Query: 594 ALRKLRHPSRSEVLRSFLD 612 ALRKLR P RS+ L+ FL+ Sbjct: 571 ALRKLRSPKRSKPLKEFLE 589 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 56/264 (21%), Positives = 106/264 (40%), Gaps = 25/264 (9%) Query: 17 KEQGYLTYAEVNDHLPEDI-VDSDQIEDIIQMINDMGIQVMEEAPDADDLMLAENTADED 75 K G LTY E+ D L + V D+++ I + + I+V+++ + ++ + + Sbjct: 81 KNHGVLTYKEIQDRLQNEDTVSVDEMDAIYSKLAEKNIEVVDDGAEDEEPETIDEDELKV 140 Query: 76 AAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVA 135 A + E DPVRMY++E+G V LL + EI +AKR + G Sbjct: 141 DESELANLSVP---EGVIVDDPVRMYLKEIGRVPLLAGDDEIKLAKRADKGNQAKAILKG 197 Query: 136 EYP----------EAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSEL 185 E P +I LLE+ + + +E D + + + L + +E Sbjct: 198 EKPEGEFPPVNKRLSIGKLLEEANELLTQEGIWVDKRSVSLAYRKAQTLTGPDHVLDAEA 257 Query: 186 SQEDLDDDEDEDEEDGDDDSADDDNSI-----DPELAREKFA-----ELRAQYVVTRDTI 235 QE + D ++++ + ++ I + A EK L+ + V D Sbjct: 258 YQEMVSDFTMDEKKRLNRLLQENKYKIAHGQKHAQEASEKEEGSSLGTLQELFAVVEDK- 316 Query: 236 KAKGRSHATAQEEILKLSEVFKQF 259 A + Q++I + + F + Sbjct: 317 AAHQKVDEETQKQIEEGKKRFNRL 340 >UniRef50_C9KNX0 RNA polymerase sigma factor n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KNX0_9FIRM Length = 373 Score = 335 bits (858), Expect = 4e-90, Method: Composition-based stats. Identities = 172/270 (63%), Positives = 215/270 (79%), Gaps = 3/270 (1%) Query: 343 KLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL 402 L++I LT E+ + +RM G+ + A+K + EANLRLV+SIAK+Y RG+ FL Sbjct: 107 YLKEIGRVPLLTAEEEVALAKRMEAGDEE---AQKRLAEANLRLVVSIAKRYVGRGMLFL 163 Query: 403 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 462 DLIQEGN+GL+KAV+KF+Y +GYKFSTYATWWIRQAITR+IADQARTIRIPVHM+ETINK Sbjct: 164 DLIQEGNLGLIKAVEKFDYNKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINK 223 Query: 463 LNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDF 522 L R+SRQ+LQ++GREPTPEE+A+ M + D++R+++KIA+EP+S+ETPIG++EDSHLGDF Sbjct: 224 LIRVSRQLLQQLGREPTPEEIAKEMEIGVDRVREIMKIAQEPVSLETPIGEEEDSHLGDF 283 Query: 523 IEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDV 582 IED P D+A+ L+ DVL LT RE KVLR+RFG+D TLEEVG+ F V Sbjct: 284 IEDQDAPAPADAASFMLLKEQLEDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGQNFGV 343 Query: 583 TRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 TRERIRQIEAKALRKLRHPSRS L+ FLD Sbjct: 344 TRERIRQIEAKALRKLRHPSRSRKLKDFLD 373 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 44/159 (27%), Positives = 76/159 (47%), Gaps = 8/159 (5%) Query: 5 PQSQLKLLVTRGKEQG-YLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDAD 63 ++ L+ +GK+ G LTY E+ D L + + D+I+ + + GI++++++ D Sbjct: 15 SSEIVEGLLAKGKKNGGTLTYGELIDALQKQALSPDEIDTMYDTFSKRGIEIVDDSQDNS 74 Query: 64 DLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRI 123 + ++ E V E DPVRMY++E+G V LLT E E+ +AKR+ Sbjct: 75 SDDDVDIDKSDEDVEIDLSVP-----EGVSIDDPVRMYLKEIGRVPLLTAEEEVALAKRM 129 Query: 124 EDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLI 162 E G + Q +AE + ++ R DLI Sbjct: 130 EAGDEEAQKRLAEA--NLRLVVSIAKRYVGRGMLFLDLI 166 >UniRef50_C5B6H5 RNA polymerase sigma factor n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B6H5_METEA Length = 531 Score = 335 bits (858), Expect = 5e-90, Method: Composition-based stats. Identities = 162/565 (28%), Positives = 259/565 (45%), Gaps = 46/565 (8%) Query: 49 NDMGIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTV 108 + G +A A S D + Y RE+G Sbjct: 11 EEAGRSAAPDAFPGPVPAPKPRRQTPPRPPPARSGASEPTRGPEAVPDALSFYAREIGRH 70 Query: 109 ELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDP 168 +LTRE E+ +AKR+E + S + E V + R DL G + Sbjct: 71 RVLTREEEVALAKRVEAARLSLFASFVALGSMARFAAEWRSAVVSGAMRPWDLFAGEDED 130 Query: 169 NAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQY 228 A+E TA +R + Sbjct: 131 EADEGDGETAA--------------------------------------------IRTRA 146 Query: 229 VVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIM 288 V T D I A + + + +L + D LV S+ + R++ Sbjct: 147 VETVDQILAACALAQHDPGRAAEAAARIQAAKLATDRIDDLVASLEAPGAALMAAARVLG 206 Query: 289 KLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIE 348 ++ ++ + + A+ S + A + + ++ Sbjct: 207 RILEKRGGLAADLV--PVLDGTDAVADAVASGEGPFALSPAEGEAEGAALAAARAVDEVA 264 Query: 349 EETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEG 408 G ++ + + + R + R+A+ +V +NLRLV S+AKKYTNR L LDL+QEG Sbjct: 265 IPFGGSVRRFRLVQREVRAAHGDLRKARDTLVTSNLRLVFSVAKKYTNRPLPILDLVQEG 324 Query: 409 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISR 468 NIGLM+A++KF+YRRG+KFSTYA WWI+Q+I+RSIAD RTIR+PVH+ E K++R + Sbjct: 325 NIGLMRAIEKFDYRRGWKFSTYAIWWIKQSISRSIADHGRTIRLPVHLHEKAAKIDRTAA 384 Query: 469 QMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTL 528 ++ E+GR P+P ELA+ + + ++ +++ +++E +S++ P+G+D D GD +ED Sbjct: 385 RLRAELGRPPSPPELAQALDIDVRQVERLMNMSRETVSLDLPVGEDGDVRFGDLVEDEKA 444 Query: 529 ELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIR 588 P+ A L+ A D + L RE ++RMRFGI TLEE+G+ F ++RER+R Sbjct: 445 PDPVGLADLAKLKDAVSDAVGDLPEREQTIIRMRFGIGYADQMTLEEIGQHFRISRERVR 504 Query: 589 QIEAKALRKLRHPSRSEVLRSFLDD 613 Q+E+KA+++LR P LR FLDD Sbjct: 505 QVESKAIQRLRSPEIGAYLRKFLDD 529 >UniRef50_Q3AEW8 RNA polymerase sigma factor n=9 Tax=Clostridia RepID=Q3AEW8_CARHZ Length = 370 Score = 334 bits (857), Expect = 5e-90, Method: Composition-based stats. Identities = 171/270 (63%), Positives = 219/270 (81%), Gaps = 3/270 (1%) Query: 343 KLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL 402 L++I LT E+ ++ +R G+ + AK+++ EANLRLV+SIAK+Y RG+ FL Sbjct: 104 YLKEIGRVPLLTPEEEIELAKRKEEGDEE---AKRKLAEANLRLVVSIAKRYVGRGMLFL 160 Query: 403 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 462 DLIQEGN+GL+KAV+KF+YR+GYKFSTYATWWIRQAITR+IADQARTIRIPVHM+ETINK Sbjct: 161 DLIQEGNLGLLKAVEKFDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINK 220 Query: 463 LNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDF 522 L R+SR +LQE+GREPTPEE+A+ M + EDK+R+++KIA+EP+S+ETPIG++EDSHLGDF Sbjct: 221 LIRVSRNLLQELGREPTPEEIAKEMGISEDKVREIMKIAQEPVSLETPIGEEEDSHLGDF 280 Query: 523 IEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDV 582 +ED + P++ A+ LR +VL LT RE KVLR+RFG+D TLEEVG+ F V Sbjct: 281 VEDPDAKAPVEEASYTLLREQLDEVLKTLTEREQKVLRLRFGLDDGRARTLEEVGQIFGV 340 Query: 583 TRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 TRERIRQIEAKALRKLRHPSRS+ L+ FL+ Sbjct: 341 TRERIRQIEAKALRKLRHPSRSKKLKDFLE 370 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 47/158 (29%), Positives = 84/158 (53%), Gaps = 4/158 (2%) Query: 7 SQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLM 66 +L +V +GK++G LTY ++ D L ++S+QI+++ + + + GI+V+ E P+ + Sbjct: 8 EKLMEIVEKGKKRGVLTYNDLLDSLQNVDINSEQIDELYEYLANQGIEVVPEIPELELDS 67 Query: 67 LA--ENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIE 124 + ++ D ++ L E DPVRMY++E+G V LLT E EI++AKR E Sbjct: 68 INSLDDDVDFKPSDIDEVDLDLTIPEGIAIDDPVRMYLKEIGRVPLLTPEEEIELAKRKE 127 Query: 125 DGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLI 162 +G + + +AE + ++ R DLI Sbjct: 128 EGDEEAKRKLAEA--NLRLVVSIAKRYVGRGMLFLDLI 163 >UniRef50_A5IMD4 RNA polymerase sigma factor n=24 Tax=Bacteria RepID=A5IMD4_THEP1 Length = 407 Score = 334 bits (857), Expect = 6e-90, Method: Composition-based stats. Identities = 161/283 (56%), Positives = 209/283 (73%), Gaps = 3/283 (1%) Query: 330 LHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVIS 389 +HD S L++I + LT Q +++ RR +G+ K AK++++ +NLRLV+S Sbjct: 121 IHDSSNVRDSIKMYLKEIGKIPLLTPAQERELARRAQMGDKK---AKEKLITSNLRLVVS 177 Query: 390 IAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQART 449 IAK+Y RGL F DLIQEGNIGL+KAV+KF++R+GYKFSTYATWWIRQAITR+IADQART Sbjct: 178 IAKRYMGRGLSFQDLIQEGNIGLLKAVEKFDWRKGYKFSTYATWWIRQAITRAIADQART 237 Query: 450 IRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMET 509 IRIPVHM+ETINKLNR+ R+ Q+ G EP+ EELA+ M P +KI+++L+ AKE IS+E+ Sbjct: 238 IRIPVHMVETINKLNRLRREYYQKHGEEPSIEELAKMMGKPPEKIKEILEAAKETISLES 297 Query: 510 PIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNT 569 PIG+DEDS + DF+ D ++ P A +R VL L+ REA VLRMR+G+ Sbjct: 298 PIGEDEDSSIEDFVADDSIASPKKEAMRMLMREELEKVLKTLSPREAMVLRMRYGLLDGK 357 Query: 570 DYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 TLEEVG+ F+VTRERIRQIE KALRKLRHPSRS+ L+S L Sbjct: 358 PKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKYLKSLLS 400 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 76/159 (47%), Gaps = 7/159 (4%) Query: 6 QSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSD--QIEDIIQMINDMGIQVMEEAPDAD 63 + ++K L++ GK++GY+TY +++ P D D D IE I + + GI ++E + + Sbjct: 40 EKRIKKLISLGKKKGYITYEDIDKAFPPDFEDFDTNLIERIHEELEKHGINIVESESEEE 99 Query: 64 DLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRI 123 ++ + DE E + S + D ++MY++E+G + LLT E ++A+R Sbjct: 100 EMSVPG---DEQELEELLERESPEIHDSSNVRDSIKMYLKEIGKIPLLTPAQERELARRA 156 Query: 124 EDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLI 162 + G + + + + ++ R DLI Sbjct: 157 QMGDKKAKEKLITS--NLRLVVSIAKRYMGRGLSFQDLI 193 >UniRef50_B0TG57 RNA polymerase sigma factor n=11 Tax=Bacteria RepID=B0TG57_HELMI Length = 371 Score = 334 bits (856), Expect = 7e-90, Method: Composition-based stats. Identities = 170/270 (62%), Positives = 218/270 (80%), Gaps = 3/270 (1%) Query: 343 KLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL 402 L++I L+ E+ ++ +RM G+ AK+ + EANLRLV+SIAK+Y RG+ FL Sbjct: 105 YLKEIGRVPLLSAEEEIELAKRMEEGDEA---AKRRLAEANLRLVVSIAKRYVGRGMLFL 161 Query: 403 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 462 DLIQEGN+GL+KAV+KF+YR+GYKFSTYATWWIRQAITR+IADQARTIRIPVHM+ETINK Sbjct: 162 DLIQEGNLGLIKAVEKFDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINK 221 Query: 463 LNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDF 522 L R+SRQ+LQE GREP PEE+A+ M +P +++R+++KIA+EP+S+ETPIG++EDSHLGDF Sbjct: 222 LIRVSRQLLQEYGREPMPEEIAKEMDIPVERVREIMKIAQEPVSLETPIGEEEDSHLGDF 281 Query: 523 IEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDV 582 IED P ++A+ L+ +VL LTARE KVLR+RFG+D TLEEVG++F V Sbjct: 282 IEDQDAPAPAEAASFILLKEQLEEVLETLTAREMKVLRLRFGLDDGRSRTLEEVGQEFGV 341 Query: 583 TRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 TRERIRQIEAKALRKLRHPSRS+ L+ +LD Sbjct: 342 TRERIRQIEAKALRKLRHPSRSKKLKDYLD 371 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 47/152 (30%), Positives = 79/152 (51%), Gaps = 5/152 (3%) Query: 11 LLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLAEN 70 L+ +GK++G LTY E+ D L + +DQ++DI + + +MGI V+ E +++ L + Sbjct: 18 DLIAKGKKKGVLTYQEIMDALQGVEMTADQVDDIYEQLGNMGIDVVPENTESESL---DK 74 Query: 71 TADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQV 130 + E + E DPVRMY++E+G V LL+ E EI++AKR+E+G Sbjct: 75 AEEPIIREEEEIEVDLSVPEGVGIDDPVRMYLKEIGRVPLLSAEEEIELAKRMEEGDEAA 134 Query: 131 QCSVAEYPEAITYLLEQYDRVEAEEARLSDLI 162 + +AE + ++ R DLI Sbjct: 135 KRRLAEA--NLRLVVSIAKRYVGRGMLFLDLI 164 >UniRef50_P77994 RNA polymerase sigma factor rpoD n=6 Tax=Thermotogaceae RepID=RPOD_THEMA Length = 399 Score = 333 bits (854), Expect = 1e-89, Method: Composition-based stats. Identities = 161/283 (56%), Positives = 209/283 (73%), Gaps = 3/283 (1%) Query: 330 LHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVIS 389 +HD S L++I + LT Q +++ RR +G+ K AK++++ +NLRLV+S Sbjct: 113 IHDSSNVRDSIKMYLKEIGKIPLLTPAQERELARRAQMGDKK---AKEKLITSNLRLVVS 169 Query: 390 IAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQART 449 IAK+Y RGL F DLIQEGNIGL+KAV+KF++R+GYKFSTYATWWIRQAITR+IADQART Sbjct: 170 IAKRYMGRGLSFQDLIQEGNIGLLKAVEKFDWRKGYKFSTYATWWIRQAITRAIADQART 229 Query: 450 IRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMET 509 IRIPVHM+ETINKLNR+ R+ Q+ G EP+ EELA+ M P +KI+++L+ AKE IS+E+ Sbjct: 230 IRIPVHMVETINKLNRLRREYYQKHGEEPSIEELAKMMGKPPEKIKEILEAAKETISLES 289 Query: 510 PIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNT 569 PIG+DEDS + DF+ D ++ P A +R VL L+ REA VLRMR+G+ Sbjct: 290 PIGEDEDSSIEDFVADDSIASPKKEAMRMLMREELEKVLKTLSPREAMVLRMRYGLLDGK 349 Query: 570 DYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 TLEEVG+ F+VTRERIRQIE KALRKLRHPSRS+ L+S L Sbjct: 350 PKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKYLKSLLS 392 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 75/159 (47%), Gaps = 7/159 (4%) Query: 6 QSQLKLLVTRGKEQGYLTYAEVNDHLPEDI--VDSDQIEDIIQMINDMGIQVMEEAPDAD 63 + ++K L++ GK++GY+TY +++ P D D++ IE I + + GI ++ + Sbjct: 32 ERRIKKLISLGKKKGYITYEDIDKAFPPDFEGFDTNLIERIHEELEKHGINIV---ENEP 88 Query: 64 DLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRI 123 + ++DE E + S + D ++MY++E+G + LLT E ++A+R Sbjct: 89 EEEEISASSDEQELEELLEKESPEIHDSSNVRDSIKMYLKEIGKIPLLTPAQERELARRA 148 Query: 124 EDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLI 162 + G + + + + ++ R DLI Sbjct: 149 QMGDKKAKEKLITS--NLRLVVSIAKRYMGRGLSFQDLI 185 >UniRef50_C4LJ07 RNA polymerase sigma factor n=115 Tax=Bacteria RepID=C4LJ07_CORK4 Length = 621 Score = 333 bits (854), Expect = 1e-89, Method: Composition-based stats. Identities = 154/313 (49%), Positives = 215/313 (68%) Query: 300 KNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVK 359 + L ++ + + +E+ +++ + L ++EE + Sbjct: 309 RKDAELTASADSVRAYLKQIGKVALLNAEQEVSLAQRIEAGLYANHKLEELKASNTKLSP 368 Query: 360 DINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF 419 +R + R+AK ++EANLRLV+S+AK+YT RG+ FLDLIQEGN+GL++AV+KF Sbjct: 369 AQSRDLRSIAHDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKF 428 Query: 420 EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPT 479 +Y +GYKFSTYATWWIRQAITRS+ADQARTIRIPVHM+E INKL RI R++LQ++ REPT Sbjct: 429 DYTKGYKFSTYATWWIRQAITRSMADQARTIRIPVHMVEVINKLGRIQRELLQDLSREPT 488 Query: 480 PEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTES 539 PEELA M + EDK+ ++ + A+EPIS++ IGD+ DS LGDFIED+ + +D+ + Sbjct: 489 PEELAREMDITEDKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTL 548 Query: 540 LRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLR 599 L+ DVL LT REA V+R+RFG+ TL+E+G+ + VTRERIRQIE+K + KLR Sbjct: 549 LQDQLQDVLKTLTEREAGVVRLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLR 608 Query: 600 HPSRSEVLRSFLD 612 HPSRS+VLR +LD Sbjct: 609 HPSRSQVLRDYLD 621 Score = 52.7 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 34/58 (58%) Query: 75 DAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQC 132 D E+AA + ++E+ + D VR Y++++G V LL E E+ +A+RIE G+ Sbjct: 298 DEDESAALRQARKDAELTASADSVRAYLKQIGKVALLNAEQEVSLAQRIEAGLYANHK 355 >UniRef50_A5UQ16 RNA polymerase sigma factor n=3 Tax=Chloroflexi (class) RepID=A5UQ16_ROSS1 Length = 541 Score = 332 bits (852), Expect = 2e-89, Method: Composition-based stats. Identities = 174/465 (37%), Positives = 252/465 (54%), Gaps = 29/465 (6%) Query: 148 YDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSAD 207 +D + E ++D + ++ L + E + E + D + Sbjct: 106 FDDLNVEGISVNDTVRMYLREIGRVPLLNARQEILLAQKIEIGEYLESYRTQLAADWRPE 165 Query: 208 DDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFD 267 + + + L+ + V D + + ++ E L P Sbjct: 166 ----QVDVIGAQMYQRLQKTWPVVADAV-----------RLLYEIVEQPLPDPLTPGCLR 210 Query: 268 YLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWS 327 + M R ++Q +M + F F + Sbjct: 211 EVSAIQERMTFEQRQSFEKRRNELIKQHRMTAEQFDQTFAQATIIFSLLP---------- 260 Query: 328 EKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLV 387 H V + + +E+ + R ++ + + A++++ +ANLRLV Sbjct: 261 ---HVVQQRLIAFTDW-PTVEDVQQACAAARDQLWRDWNLAIDQGKTAREDLTQANLRLV 316 Query: 388 ISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA 447 +S+AKKY RGLQ LDLIQEGN+GL++AV+KF+YR+G+KFSTYATWWIRQAITR+IADQA Sbjct: 317 VSVAKKYIGRGLQLLDLIQEGNVGLIRAVEKFDYRKGFKFSTYATWWIRQAITRAIADQA 376 Query: 448 RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISM 507 RTIRIPVHM+ETIN+L R SR+MLQE+GREPT EEL+ + +P DK+R + K + EP+S+ Sbjct: 377 RTIRIPVHMVETINRLMRESRRMLQELGREPTDEELSRALGIPVDKVRSIRKTSLEPVSL 436 Query: 508 ETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDM 567 ETP+G +EDS LGDFIED+ + P D+A+ + LR VL LT RE +VL++RFG++ Sbjct: 437 ETPVGQEEDSQLGDFIEDSKVLAPSDAASHQMLREQVEQVLNQLTERERRVLQLRFGLED 496 Query: 568 NTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 TLEEVGK+F VTRERIRQIE KALRKLRHP + LR +L+ Sbjct: 497 GHSRTLEEVGKEFGVTRERIRQIEVKALRKLRHPRLGKKLRDYLE 541 Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 39/129 (30%), Positives = 60/129 (46%), Gaps = 10/129 (7%) Query: 2 EQNPQS--QLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEA 59 E+ PQ+ L L+ GK++G++T E+ L DSD++ +I Q + GI +E Sbjct: 30 EEEPQTITSLSDLLAIGKQRGFVTEGEIAQLLANSDADSDRLAEIQQALQAAGIATRDE- 88 Query: 60 PDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDI 119 + A+ D + E D VRMY+RE+G V LL EI + Sbjct: 89 -------MITGGAEIDIPFEEEGDFDDLNVEGISVNDTVRMYLREIGRVPLLNARQEILL 141 Query: 120 AKRIEDGIN 128 A++IE G Sbjct: 142 AQKIEIGEY 150 >UniRef50_P18182 RNA polymerase principal sigma factor hrdA n=6 Tax=Actinomycetales RepID=HRDA_STRCO Length = 396 Score = 331 bits (850), Expect = 3e-89, Method: Composition-based stats. Identities = 136/306 (44%), Positives = 206/306 (67%), Gaps = 4/306 (1%) Query: 307 TGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMS 366 ++ + + + + D++ V L +++ GL D++R + Sbjct: 95 PSSDLFRQYLREIGRIPLLSAAEEVDLARRVEAGLFAEEKLRCSPGLDDRLALDLDRLVV 154 Query: 367 IGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYK 426 +G AK+ ++EANLRLV+S+AK+Y RGL LDL+QEGN+GL++AV+KF+Y RGYK Sbjct: 155 LGR----LAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYK 210 Query: 427 FSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAER 486 FSTYATWWIRQA++R++ADQARTIR+PVH++E IN++ R+ R+MLQE G EPTP+E+A Sbjct: 211 FSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGCEPTPQEVAAH 270 Query: 487 MLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHD 546 + + +++ +VL++A+EP+S+ P+G+++D LGD IED P++SA LR Sbjct: 271 LDLAPERVGEVLRLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFLLLRQHLEA 330 Query: 547 VLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEV 606 VL+ L RE KV+++R+G+ TLEE+G+ F VTRERIRQIE+K L KLR + ++ Sbjct: 331 VLSTLGERERKVVQLRYGLADGRPRTLEEIGRLFGVTRERIRQIESKTLSKLRDHAYADQ 390 Query: 607 LRSFLD 612 LR +LD Sbjct: 391 LRGYLD 396 Score = 58.1 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 42/116 (36%) Query: 49 NDMGIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTV 108 + G+ + A L A D E + G ++D R Y+RE+G + Sbjct: 51 AERGVLLAMPAQPGAGAALPHPGAPVDVPEHPEPPPPTRTESGGPSSDLFRQYLREIGRI 110 Query: 109 ELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITG 164 LL+ E+D+A+R+E G+ + L+ V LI Sbjct: 111 PLLSAAEEVDLARRVEAGLFAEEKLRCSPGLDDRLALDLDRLVVLGRLAKRRLIEA 166 >UniRef50_D1CB24 RNA polymerase sigma factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CB24_THET1 Length = 463 Score = 330 bits (846), Expect = 1e-88, Method: Composition-based stats. Identities = 146/462 (31%), Positives = 229/462 (49%), Gaps = 6/462 (1%) Query: 158 LSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELA 217 + D P+ + E D + ++ +D + + D E Sbjct: 2 IQDYKFRISIPSDGSFIEDAHLQSEESFELESEDIAIEFSDDATNDVDQEGSDLSDLEHI 61 Query: 218 REKFAELRAQYVVTRDTIKA---KGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMR 274 +L + I ++LS ++ L + Sbjct: 62 EGYADDLDEPVQMYLREIGKVPLLTAEQEVILARKIELSRRLDEYWLQQHTNADVTLVAL 121 Query: 275 VMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVS 334 + + +P + + + + ++ + Sbjct: 122 KIYKSASLGYVQAKEWLPTDVSLPLSELYQAAITHARESFAKDEEVKKLLEAEQDMYLLP 181 Query: 335 EEVHRALQK---LQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIA 391 + +++ ++ + + + + + + AK +++EAN RLV+SIA Sbjct: 182 PLITEYIERSNKCPDVKTVSQVLLANKSIVINHWNKVRKEGEGAKCKLIEANTRLVVSIA 241 Query: 392 KKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIR 451 KKY RGL LDLIQEGNIGLM+A DKF+Y RGYKFSTYATWWIRQA+TR+IADQ+RTIR Sbjct: 242 KKYLGRGLSLLDLIQEGNIGLMRAADKFDYTRGYKFSTYATWWIRQAVTRAIADQSRTIR 301 Query: 452 IPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPI 511 +PVH+ ET++K+++ S+++ QE+G EPT E+L+ + MP K+ ++ + +K P+S+E PI Sbjct: 302 LPVHVCETVSKIHKTSQKLQQELGHEPTIEQLSSELGMPMKKVVQIQQASKFPVSLEAPI 361 Query: 512 GDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDY 571 G+D DS LGDF+ED + P+ A + LR + VL L +E KVL +RFG+ Sbjct: 362 GEDGDSMLGDFLEDVHVLNPVQKAANDILREQINSVLQNLPPKERKVLELRFGLVDGKCR 421 Query: 572 TLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 TLEEVG +F +TRER+RQIE ALR+LR + LR FL+D Sbjct: 422 TLEEVGNEFAITRERVRQIECTALRRLRENHLIKQLRDFLED 463 Score = 58.1 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 33/68 (48%) Query: 61 DADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA 120 D + T D D + L +E +PV+MY+RE+G V LLT E E+ +A Sbjct: 35 DIAIEFSDDATNDVDQEGSDLSDLEHIEGYADDLDEPVQMYLREIGKVPLLTAEQEVILA 94 Query: 121 KRIEDGIN 128 ++IE Sbjct: 95 RKIELSRR 102 >UniRef50_C7NC70 RNA polymerase sigma factor n=6 Tax=Bacteria RepID=C7NC70_LEPBD Length = 392 Score = 328 bits (840), Expect = 5e-88, Method: Composition-based stats. Identities = 167/393 (42%), Positives = 245/393 (62%), Gaps = 9/393 (2%) Query: 224 LRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRV----MMDR 279 + + ++++ + + + ++ + L+ + ++D Sbjct: 1 MSDKKQNLKNSLANFIKQAREQKVVSYEEINSVLSIGFSTEKIEQLIKKLTDDGVQIVDT 60 Query: 280 VRTQERLIM--KLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEV 337 + +E L+ + + KM +F S+ + + + K+ + + Sbjct: 61 KKEKEDLLKVPETLADIEKMEISDFEDTHDEFVESEIDDSEVDKLLQTDLLKMAESMDVD 120 Query: 338 HRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNR 397 L++I + L+ E+ D +R+ GE + AK++++E+NLRLV+SIAKK+TNR Sbjct: 121 EPIKMYLREIGQIPLLSYEEEIDYAQRVLDGEEE---AKQKLIESNLRLVVSIAKKHTNR 177 Query: 398 GLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMI 457 GL+ LDLIQEGN+GLMKAV+KFEY +G+KFSTYATWWIRQAITR+IADQ RTIRIPVHMI Sbjct: 178 GLKMLDLIQEGNMGLMKAVEKFEYEKGFKFSTYATWWIRQAITRAIADQGRTIRIPVHMI 237 Query: 458 ETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDS 517 ETINK+ + SR +LQE G+EPT EELAE++ +P +K++ +L++ ++PIS+ETP+G +EDS Sbjct: 238 ETINKIKKESRIILQETGKEPTAEELAEKLELPVEKVKSILEMNQDPISLETPVGSEEDS 297 Query: 518 HLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVG 577 LGDF+ED P D+ T L+ +VL L RE VLR R+G+D + TLEEVG Sbjct: 298 ELGDFVEDDKFANPYDATTRILLKEQLDEVLKTLNEREEMVLRYRYGLDDGSQKTLEEVG 357 Query: 578 KQFDVTRERIRQIEAKALRKLRHPSRSEVLRSF 610 K F+VTRERIRQIE KALRKLRHPSR + L + Sbjct: 358 KIFNVTRERIRQIEVKALRKLRHPSRRKKLEDY 390 Score = 90.9 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 41/184 (22%), Positives = 86/184 (46%), Gaps = 26/184 (14%) Query: 2 EQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPD 61 +QN ++ L + + +EQ ++Y E+N L +++IE +I+ + D G+Q+++ + Sbjct: 5 KQNLKNSLANFIKQAREQKVVSYEEINSVL-SIGFSTEKIEQLIKKLTDDGVQIVDTKKE 63 Query: 62 ADDLMLAENT---------ADEDAAEAAAQVLSSVESEIGR--------------TTDPV 98 +DL+ T +D + +SE+ + +P+ Sbjct: 64 KEDLLKVPETLADIEKMEISDFEDTHDEFVESEIDDSEVDKLLQTDLLKMAESMDVDEPI 123 Query: 99 RMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARL 158 +MY+RE+G + LL+ E EID A+R+ DG + + + E + ++ + ++ Sbjct: 124 KMYLREIGQIPLLSYEEEIDYAQRVLDGEEEAKQKLIES--NLRLVVSIAKKHTNRGLKM 181 Query: 159 SDLI 162 DLI Sbjct: 182 LDLI 185 >UniRef50_P27785 RNA polymerase sigma factor rpoD n=102 Tax=Bacteria RepID=RPOD_STRAU Length = 317 Score = 326 bits (835), Expect = 2e-87, Method: Composition-based stats. Identities = 132/309 (42%), Positives = 198/309 (64%), Gaps = 4/309 (1%) Query: 304 TLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINR 363 + + + + + D++ V L EE+ G + + Sbjct: 13 GAGPSADLFRQYLREIGRIPLLTAAEEVDLARRVEAGLFA----EEKLGGAADLDSQLAV 68 Query: 364 RMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRR 423 + R AK+ ++E+NLRLV+S+AK+Y RGL LDL+QEGN+GL++AV+KF+Y R Sbjct: 69 DLDRLVVMGRMAKRRLIESNLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYAR 128 Query: 424 GYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEEL 483 GYKFSTYATWWIRQA++R++ADQARTIR+PVH++E IN++ R+ R+MLQE G EPT EE+ Sbjct: 129 GYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTAEEV 188 Query: 484 AERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAA 543 A + + +++ +VL++A+EP+S+ P+G+++D LGD IED P++SA Sbjct: 189 AVHLELTPERVLEVLRLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFFLRCEH 248 Query: 544 THDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 603 VL+ L RE KV+++R+G+ TLEE+G+ F VTRERIRQIE+K L KLR + Sbjct: 249 LEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHAF 308 Query: 604 SEVLRSFLD 612 ++ LR +LD Sbjct: 309 ADQLRGYLD 317 Score = 55.4 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 41/267 (15%), Positives = 86/267 (32%), Gaps = 4/267 (1%) Query: 80 AAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPE 139 + + G + D R Y+RE+G + LLT E+D+A+R+E G+ + Sbjct: 3 PPRTRGAESGGAGPSADLFRQYLREIGRIPLLTAAEEVDLARRVEAGLFAEEKLGGAADL 62 Query: 140 AITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEE 199 ++ V LI + N ++ +VG L+ DL + + Sbjct: 63 DSQLAVDLDRLVVMGRMAKRRLI----ESNLRLVVSVAKRYVGRGLTMLDLVQEGNLGLI 118 Query: 200 DGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQF 259 + A + ++ + + ++++ Q Sbjct: 119 RAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQE 178 Query: 260 RLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAA 319 R + + + + +RV RL + + +++ + L E D Sbjct: 179 RGYEPTAEEVAVHLELTPERVLEVLRLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPVE 238 Query: 320 IAMNKPWSEKLHDVSEEVHRALQKLQQ 346 A E L V + +K+ Q Sbjct: 239 SAAFFLRCEHLEAVLSTLGERERKVVQ 265 >UniRef50_B8GCU9 RNA polymerase sigma factor n=5 Tax=Bacteria RepID=B8GCU9_CHLAD Length = 398 Score = 324 bits (831), Expect = 5e-87, Method: Composition-based stats. Identities = 127/298 (42%), Positives = 194/298 (65%), Gaps = 5/298 (1%) Query: 315 WFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARR 374 + + +E+ +++ + R E T+ ++ + + Sbjct: 104 YLREIGQVPLLTAEQEKQLAQMIERGQAA-----ERKLATLPPDSPEAAKLRRIKEQGDE 158 Query: 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 434 A+++M ANLRLV+SIAK+Y +RGL LDLIQEG++GL++A++KF++ +GYKFSTYATWW Sbjct: 159 ARQKMAAANLRLVVSIAKRYRDRGLPLLDLIQEGSLGLLRAIEKFDHTKGYKFSTYATWW 218 Query: 435 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKI 494 I+QA++R++ADQ+R +R+PVH+ ET+N++ RQ+ Q +GREPT ELA + M E+K+ Sbjct: 219 IKQALSRALADQSRLVRLPVHLGETLNRIQSARRQLTQSLGREPTDTELANHLGMSEEKL 278 Query: 495 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAR 554 R++ + A++P+S+ TP+G++ DS L DFI D D+A + LR L L+ R Sbjct: 279 RELRRTAQDPVSLATPVGEEADSTLADFIPDPHALDADDAAASGMLRQQIAAALDQLSER 338 Query: 555 EAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 E +VL +R+G+ TLEEVGK F VTRER+RQIE KALRKLRHP ++L+ +LD Sbjct: 339 ERRVLELRYGLADGQPRTLEEVGKAFGVTRERVRQIEVKALRKLRHPRLGKLLKDYLD 396 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 70/153 (45%), Gaps = 8/153 (5%) Query: 5 PQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADD 64 + ++ L+ +G++QG++T+ ++ +P +QI+ I + + G+ V + Sbjct: 16 SPADVQALIAQGRQQGFVTFEDIQRLVPNLEESVEQIDSIYAALAEAGVPVHDGDE---- 71 Query: 65 LMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIE 124 + DE + + E +D VR+Y+RE+G V LLT E E +A+ IE Sbjct: 72 ----PVSGDESLTPSVTDLDLDDELSDALLSDSVRLYLREIGQVPLLTAEQEKQLAQMIE 127 Query: 125 DGINQVQCSVAEYPEAITYLLEQYDRVEAEEAR 157 G + P++ + + + +EAR Sbjct: 128 RGQAAERKLATLPPDSPEAAKLRRIKEQGDEAR 160 >UniRef50_B4DC14 RNA polymerase sigma factor n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DC14_9BACT Length = 479 Score = 323 bits (829), Expect = 1e-86, Method: Composition-based stats. Identities = 170/457 (37%), Positives = 235/457 (51%), Gaps = 18/457 (3%) Query: 171 EEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVV 230 E P ED D + L+RE+ A++ + Sbjct: 20 ESSAEPDRISRRQPEQGEDEIRRPSTSGGMEDHLRLYLRQTPHRLLSREQEADICRRVEA 79 Query: 231 TRDTIKAKG-------RSHATAQEEILKLSEVFKQFRLVPK--QFDYLVNSMRVMMDRVR 281 + I+ +H +L E K + + + + + R Sbjct: 80 AEEQIRQHLYRFGSTAHAHLQLVRRLLAREERLDHVVATAKLERRERYLGVLAKLAARFE 139 Query: 282 T----QERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEV 337 ++ + F F E +EEV Sbjct: 140 KTATLCDQHYADYLTHRGHPEAAQFAQAFLQVRQKLAALYPKFFFKMSAFEASAKTAEEV 199 Query: 338 HRA-----LQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAK 392 R Q ++ ++ E L ++ + M + KA A+ EMVE NLRLV+SIA+ Sbjct: 200 CRTTTVTDEQVMRNLQAEMWLNPSELNVELQEMKRWQRKALEARTEMVECNLRLVVSIAR 259 Query: 393 KYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRI 452 +Y NRG FLDLIQEGNIGLM+AV++FEYRRGYKF+T ATWWIRQAI+RSIA+QARTIRI Sbjct: 260 EYQNRGQPFLDLIQEGNIGLMRAVERFEYRRGYKFATCATWWIRQAISRSIANQARTIRI 319 Query: 453 PVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIG 512 P HMI+ + KL R+ RQM QE GR+PT E+LA + +P ++R +LK+A+EPIS+ TP+G Sbjct: 320 PTHMIDLLAKLIRVQRQMTQESGRDPTAEDLAGELHLPLRRVRALLKMAEEPISIHTPVG 379 Query: 513 DDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYT 572 ++ S LGDFIED ++E P A LR + VL LT RE ++L RFG+ + T Sbjct: 380 EEGGSRLGDFIEDHSVEDPSKQAAVAMLREKINAVLHTLTEREREILEQRFGLIDGRERT 439 Query: 573 LEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRS 609 LEE+G+ F VTRER+RQIEAKALRK+RHP R L+ Sbjct: 440 LEEIGRHFKVTRERVRQIEAKALRKMRHPERRRQLQG 476 Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 38/236 (16%), Positives = 74/236 (31%), Gaps = 6/236 (2%) Query: 63 DDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKR 122 AE + S G D +R+Y+R+ LL+RE E DI +R Sbjct: 18 KTESSAEPDRISRRQPEQGEDEIRRPSTSGGMEDHLRLYLRQT-PHRLLSREQEADICRR 76 Query: 123 IEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVG 182 +E Q++ + + L+ R+ A E RL ++ E L A Sbjct: 77 VEAAEEQIRQHLYRFGSTAHAHLQLVRRLLAREERLDHVVATAKLERRERYLGVLAKLAA 136 Query: 183 SELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSH 242 L D D + R+K A L ++ +A ++ Sbjct: 137 RFEKTATLCDQHYADYLTHRGHPEAAQFAQAFLQVRQKLAALYPKFFFKMSAFEASAKTA 196 Query: 243 ATAQE-----EILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVE 293 + + + + L P + + + M+ + +++ + Sbjct: 197 EEVCRTTTVTDEQVMRNLQAEMWLNPSELNVELQEMKRWQRKALEARTEMVECNLR 252 >UniRef50_C8NZE6 RNA polymerase sigma factor n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZE6_ERYRH Length = 459 Score = 323 bits (828), Expect = 1e-86, Method: Composition-based stats. Identities = 167/370 (45%), Positives = 228/370 (61%), Gaps = 3/370 (0%) Query: 246 QEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITL 305 EE + + L + + +M + D V+ + I ++ + K + L Sbjct: 88 AEEDEIFDDSLNKVDLSSYENELTSANMVRINDPVKMYLKEIGRVNLLDAKDEPEIARRL 147 Query: 306 FTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRM 365 G + + N + P + E +++ Sbjct: 148 QEGEQAKEFIINKYKEIVDPAITDEELAERLTENQIGYFFDDFEAYLTENGDEENLAFLT 207 Query: 366 SI--GEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRR 423 + A++ ++ ANLRLV+SIAKKY RG+ FLDLIQEGN+GL+KAV+KF+Y + Sbjct: 208 NWVATYYDGLEARRILISANLRLVVSIAKKYVGRGMLFLDLIQEGNMGLVKAVEKFDYTK 267 Query: 424 GYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEEL 483 G+KFSTYATWWIRQAITR+IADQARTIRIPVHM+ETINKL RI R ++Q +GREPT EE+ Sbjct: 268 GFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLTRIQRSLVQTLGREPTAEEI 327 Query: 484 AERM-LMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRA 542 A M + +K+R++ KIA +P+S+ETPIG+++DSHLGDFIED P + A + L+ Sbjct: 328 AAEMENITPEKVREIQKIALDPVSLETPIGEEDDSHLGDFIEDKDALSPDEYANNQLLKE 387 Query: 543 ATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 602 VL GLT RE KVLR+RFG++ TLEEVGK+F+VTRERIRQIEAKALRKL+HP+ Sbjct: 388 EIKMVLEGLTEREEKVLRLRFGLEDGRTRTLEEVGKEFNVTRERIRQIEAKALRKLKHPT 447 Query: 603 RSEVLRSFLD 612 RS+ LR F+D Sbjct: 448 RSKRLRDFVD 457 Score = 68.9 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 82/195 (42%), Gaps = 24/195 (12%) Query: 3 QNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGI--------- 53 + + + + + +++ L +V + ++ D E++ + + GI Sbjct: 7 KTLEEVKESFLKQYEKKRVLLNDDVEKAIDHLNLNDDDSEELFEWFTEKGIILSDDEDDI 66 Query: 54 ----QVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIG-------RTTDPVRMYM 102 + PD DD +++ +++ + + + E R DPV+MY+ Sbjct: 67 DEEVMLEAGEPDVDDDFISDEAEEDEIFDDSLNKVDLSSYENELTSANMVRINDPVKMYL 126 Query: 103 REMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLL---EQYDRVEAEEAR-L 158 +E+G V LL + E +IA+R+++G + + +Y E + + E +R+ + Sbjct: 127 KEIGRVNLLDAKDEPEIARRLQEGEQAKEFIINKYKEIVDPAITDEELAERLTENQIGYF 186 Query: 159 SDLITGFVDPNAEED 173 D ++ N +E+ Sbjct: 187 FDDFEAYLTENGDEE 201 >UniRef50_A5UPS4 RNA polymerase sigma factor n=4 Tax=Chloroflexaceae RepID=A5UPS4_ROSS1 Length = 402 Score = 323 bits (827), Expect = 2e-86, Method: Composition-based stats. Identities = 134/298 (44%), Positives = 201/298 (67%), Gaps = 4/298 (1%) Query: 315 WFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARR 374 + + +E+ +++ + + + +E E + ++ ++++ G Sbjct: 109 YLQEIGQVPLLSAEQEVMLAKAMEAGHRARRALEREEYSSWQERVMYEQQVAQG----NE 164 Query: 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 434 A++ +++ANLRLV+SIAKKYT+ GL +DL+QEGNIGLM+AV+KF+Y +G+KFSTYATWW Sbjct: 165 ARQHLIQANLRLVVSIAKKYTSYGLTMMDLVQEGNIGLMRAVEKFDYTKGHKFSTYATWW 224 Query: 435 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKI 494 IRQAITR+IADQ+RTIR+PVHM E I+++ R S ++ Q M REPTPEE+A+ M + K+ Sbjct: 225 IRQAITRAIADQSRTIRLPVHMGEAISQVKRTSHKLQQTMQREPTPEEIADAMGISSTKV 284 Query: 495 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAR 554 R+ L+ + P+S+E P+G + + +GDFIED + P ++A LR +VL L R Sbjct: 285 RRTLEASMHPLSLEMPVGQEGEGRMGDFIEDDRISTPAEAAAASMLREQLEEVLQKLPER 344 Query: 555 EAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 E K++++R+G+ TLEEVG +F +TRERIRQIEA ALRKLRHP + LR +LD Sbjct: 345 ERKIIQLRYGLKDGRYRTLEEVGMEFGITRERIRQIEAVALRKLRHPHLGKKLRGYLD 402 Score = 95.9 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 37/150 (24%), Positives = 63/150 (42%), Gaps = 15/150 (10%) Query: 7 SQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLM 66 L+ L+ G+ +G+LTY E+ + LP+ ++ + + GI+V+E D D Sbjct: 24 QTLEYLLEIGRTRGFLTYNEILEALPQPEHHIADVDQLYASLQAEGIRVVETPLDIHDNG 83 Query: 67 LAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDG 126 + + + DPVRMY++E+G V LL+ E E+ +AK +E G Sbjct: 84 STGDDE---------LLADMPDLTDVALDDPVRMYLQEIGQVPLLSAEQEVMLAKAMEAG 134 Query: 127 INQVQCSVAEYPEAITYLLEQYDRVEAEEA 156 A +RV E+ Sbjct: 135 HR------ARRALEREEYSSWQERVMYEQQ 158 >UniRef50_D1VBD5 RNA polymerase sigma factor n=1 Tax=Frankia sp. EuI1c RepID=D1VBD5_9ACTO Length = 424 Score = 321 bits (822), Expect = 7e-86, Method: Composition-based stats. Identities = 151/393 (38%), Positives = 226/393 (57%), Gaps = 12/393 (3%) Query: 222 AELRAQYVVTRDTIKAKGRSHATAQ--EEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDR 279 ++ V + A+GR E L L+P LV + +++ Sbjct: 42 EDIDELDVSAVAELIARGRDSGEVSRSELREALESADVGVELLPALVARLVAAGVEVVEE 101 Query: 280 VRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHR 339 ER + + + + + + ++S+ V Sbjct: 102 EDGAERSAAPSETGRVT------AEHAGTADLVRMYLREIGRVPLLNAAQEVELSKRVEA 155 Query: 340 ALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGL 399 L ++ L E +D+ + GEA AK+++V ANLRLV+S+AKKY+ RG+ Sbjct: 156 GLFAEHKLATAADLEPELHRDLKLLVRDGEA----AKQQLVSANLRLVVSVAKKYSGRGM 211 Query: 400 QFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIET 459 LDL+QEGN+GL++AV+KF+Y +GYKFSTYATWWIRQAI R++ADQARTIRIPVH++E Sbjct: 212 TLLDLVQEGNLGLIRAVEKFDYAKGYKFSTYATWWIRQAIGRALADQARTIRIPVHVVEQ 271 Query: 460 INKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHL 519 INK+ R+ RQ++ +GREPT EELA + MP +++ ++ + A++ +S+ET +GDD DS L Sbjct: 272 INKITRLQRQLVSTLGREPTDEELALELDMPLEQVVELRRYAQDTVSLETTVGDDGDSVL 331 Query: 520 GDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQ 579 GDFIED+ P D+A+ +++ VL L+ RE +V+R+RFG+ +TL EVG + Sbjct: 332 GDFIEDSDATSPADAASYGAMQDEIDHVLGNLSPREREVMRLRFGLADGKQHTLAEVGNR 391 Query: 580 FDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 +TRERIRQIE LR+LR P+ + LR FLD Sbjct: 392 LGLTRERIRQIERDTLRELRKPAVAGRLREFLD 424 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 71/164 (43%), Gaps = 13/164 (7%) Query: 1 MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP 60 +++ S + L+ RG++ G ++ +E+ + L V + + ++ + G++V+EE Sbjct: 44 IDELDVSAVAELIARGRDSGEVSRSELREALESADVGVELLPALVARLVAAGVEVVEEED 103 Query: 61 DADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA 120 A+ AA V +E T D VRMY+RE+G V LL E++++ Sbjct: 104 GAE-------------RSAAPSETGRVTAEHAGTADLVRMYLREIGRVPLLNAAQEVELS 150 Query: 121 KRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITG 164 KR+E G+ + V EA L++ Sbjct: 151 KRVEAGLFAEHKLATAADLEPELHRDLKLLVRDGEAAKQQLVSA 194 >UniRef50_Q3AWQ6 RNA polymerase sigma factor n=5 Tax=Chroococcales RepID=Q3AWQ6_SYNS9 Length = 451 Score = 320 bits (821), Expect = 8e-86, Method: Composition-based stats. Identities = 149/277 (53%), Positives = 197/277 (71%), Gaps = 1/277 (0%) Query: 335 EEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKY 394 EE+ + E + V+ R RRAK++MV++NLRLV+SIAKKY Sbjct: 175 EELAAQFESDNGREPDKKEWAALVEMPLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKY 234 Query: 395 TNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPV 454 NRGL F DLIQEG++GL++A +KF++ +GYKFSTYATWWIRQAITR+IADQ+RTIR+PV Sbjct: 235 MNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 294 Query: 455 HMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDD 514 H+ ETI+++ + ++ + QE GR+PT EE+AE M M +K+R + K A+ PIS+ETPIG + Sbjct: 295 HLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKE 354 Query: 515 EDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLE 574 EDS LGDFIE +E P LR VLA L+ RE VLR+R+G+D TLE Sbjct: 355 EDSRLGDFIEAD-IENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLE 413 Query: 575 EVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 E+G+ FDVTRERIRQIEAKALRKLRHP+R+ VL+ ++ Sbjct: 414 EIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 450 >UniRef50_Q0RDY7 RNA polymerase sigma factor n=5 Tax=Actinomycetales RepID=Q0RDY7_FRAAA Length = 373 Score = 320 bits (820), Expect = 1e-85, Method: Composition-based stats. Identities = 139/298 (46%), Positives = 205/298 (68%), Gaps = 4/298 (1%) Query: 315 WFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARR 374 + + + + ++S+ V L ++E + L + +D+ + G A Sbjct: 80 YLREIGKVPLLNAAQEVELSKRVEAGLFAEHKLESDPDLPADLRRDLGLLVKDGHA---- 135 Query: 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 434 AK+++V ANLRLV+S+AKKY+ RG+ LDL+QEGN+GL++AV+KF+Y +GYKFSTYATWW Sbjct: 136 AKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQEGNLGLIRAVEKFDYAKGYKFSTYATWW 195 Query: 435 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKI 494 IRQAI R++ADQARTIRIPVH++E INK+ R+ RQ++ +GREPT EELA + MP +++ Sbjct: 196 IRQAIGRALADQARTIRIPVHVVEQINKITRLQRQLVSTLGREPTDEELALELDMPIEQV 255 Query: 495 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAR 554 ++ + A++ +S+ET +GDD DS LGDFIED+ P D+A+ +++ +VL GL R Sbjct: 256 VELRRYAQDTVSLETSVGDDGDSVLGDFIEDSDATSPADAASYGAMQDEIENVLGGLNPR 315 Query: 555 EAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 E +V+R+RFG+ +TL EVG + +TRERIRQIE LR+LR P+ + LR FLD Sbjct: 316 EREVMRLRFGLADGKQHTLAEVGNRLGLTRERIRQIERDTLRELRKPAVAGRLREFLD 373 Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 71/158 (44%), Gaps = 16/158 (10%) Query: 7 SQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLM 66 S + ++ RG+E G ++ +E+ D L + + + +I ++ G++++EE DD+ Sbjct: 2 SAVAEVIARGREAGEISRSELRDALESADIGLELLPALIAKLSAAGVELLEEEETTDDVT 61 Query: 67 LAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDG 126 A + E A T D VRMY+RE+G V LL E++++KR+E G Sbjct: 62 AATRSTAEHA----------------GTADLVRMYLREIGKVPLLNAAQEVELSKRVEAG 105 Query: 127 INQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITG 164 + ++ + V+ A L++ Sbjct: 106 LFAEHKLESDPDLPADLRRDLGLLVKDGHAAKQQLVSA 143 >UniRef50_D2ML80 RNA polymerase, sigma 70 subunit, RpoD family n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2ML80_9BACT Length = 414 Score = 319 bits (818), Expect = 2e-85, Method: Composition-based stats. Identities = 133/412 (32%), Positives = 215/412 (52%), Gaps = 10/412 (2%) Query: 200 DGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEV---- 255 D D P + + + T DT+ + E K + + Sbjct: 5 DHKPFDVDKRAYQHPANGKRPVSNVFPHGTPTLDTLIEDLPGDKKNENEEPKDTALEPIY 64 Query: 256 FKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTW 315 F+ FR P + +D R ++ ++ + + + Sbjct: 65 FRTFRSHPLLGKEKELELAKCIDESSETIRSVLTQAIQFAGT-----LGDRPEIQEAVHS 119 Query: 316 FNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRA 375 ++ + L++ E + L +T + ++++ + ++ + RA Sbjct: 120 LTEIRGLSGLSAPALNEAEERLAGLRNALPGRGLKTRMLGKRLQRLQHELAEHRVQLERA 179 Query: 376 KKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 435 K+ +V+ NLRLV+ IAK++T RG+ FLDLIQEGNIGLM+A ++F+YR+G+KFSTYATWW+ Sbjct: 180 KEGLVQHNLRLVVDIAKRFTGRGMGFLDLIQEGNIGLMRAAERFQYRKGFKFSTYATWWV 239 Query: 436 RQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIR 495 RQ I R++ADQ+RTIR+PVH E ++ +IS ++ Q++GREP+ EE+A + + ++++ Sbjct: 240 RQGILRAVADQSRTIRVPVHTTEAWQRMIKISHRLAQKLGREPSNEEIALALAVKPERVQ 299 Query: 496 KVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTARE 555 + EPIS + P D ++ LGD + D P + E +R+ H +L LT RE Sbjct: 300 HTTQAFLEPISFDQP-NADGETFLGDCLPDDHASPPDEHLQEEQMRSQLHRLLRVLTPRE 358 Query: 556 AKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVL 607 +V+R+RFGI TLEEVGK +VTRERIRQIE A++KLR P+ L Sbjct: 359 EQVIRLRFGIGNGQSRTLEEVGKLLNVTRERIRQIEVLAMKKLREPTVKAQL 410 >UniRef50_B1WS32 RNA polymerase sigma factor n=5 Tax=Chroococcales RepID=B1WS32_CYAA5 Length = 416 Score = 319 bits (817), Expect = 2e-85, Method: Composition-based stats. Identities = 161/437 (36%), Positives = 248/437 (56%), Gaps = 23/437 (5%) Query: 175 APTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDT 234 + SQ ++ DED E +D A+ + +++ + + + T D+ Sbjct: 2 TQANDLLTLTESQMEVAFFVDEDIESSGNDIAETETKKTRKISASRRRDPSKKKPYTEDS 61 Query: 235 IKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQ 294 I+ + + + + Q + + ++ +D+ T E+ ++ + Sbjct: 62 IRVYLQEIGRIRLLRAEEEIELARKIADLLQLERIREALWEELDQEPTDEQWGKRIFQWE 121 Query: 295 CKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLT 354 + + + + W + + ++ L+K ++E + L Sbjct: 122 ---NIEQMLRAQSAKDKDPKWSEVTTMLQQA----------DIISDLEKTWKLESKAYLP 168 Query: 355 IEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK 414 + R+AK +MV +NLRLV+SIAKKY NRGL F DLIQEG++GL++ Sbjct: 169 ---------KFKRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 219 Query: 415 AVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEM 474 A +KF++ +GYKFSTYATWWIRQAITR+IADQ+RTIR+PVH+ ETI+++ + ++ + QEM Sbjct: 220 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEM 279 Query: 475 GREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDS 534 R+PT EE+A RM M +K+R + K A+ PIS+ETPIG +EDS LGDFIE E P D Sbjct: 280 RRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG-ETPEDE 338 Query: 535 ATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKA 594 + LR +VL L+ RE VLR+R+G+D TLEE+G+ F+VTRERIRQIEAKA Sbjct: 339 VSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 398 Query: 595 LRKLRHPSRSEVLRSFL 611 LRKLRHP+R+ +L+ ++ Sbjct: 399 LRKLRHPNRNSILKEYI 415 Score = 45.4 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 74/205 (36%), Gaps = 7/205 (3%) Query: 49 NDMGIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTV 108 + M + + T + + +A + T D +R+Y++E+G + Sbjct: 13 SQMEVAFFVDEDIESSGNDIAETETKKTRKISASRRRDPSKKKPYTEDSIRVYLQEIGRI 72 Query: 109 ELLTREGEIDIAKRIED--GINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFV 166 LL E EI++A++I D + +++ ++ E + + R+ E I + Sbjct: 73 RLLRAEEEIELARKIADLLQLERIREALWEELDQEPTDEQWGKRIFQWE-----NIEQML 127 Query: 167 DPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRA 226 + +D P + V + L Q D+ D ++ + + K + + Sbjct: 128 RAQSAKDKDPKWSEVTTMLQQADIISDLEKTWKLESKAYLPKFKRRLYLGRKAKDKMVHS 187 Query: 227 QYVVTRDTIKAKGRSHATAQEEILK 251 + K + Q+ I + Sbjct: 188 NLRLVVSIAKKYMNRGLSFQDLIQE 212 >UniRef50_Q2J784 RNA polymerase sigma factor n=6 Tax=Actinomycetales RepID=Q2J784_FRASC Length = 422 Score = 317 bits (813), Expect = 6e-85, Method: Composition-based stats. Identities = 153/434 (35%), Positives = 235/434 (54%), Gaps = 16/434 (3%) Query: 181 VGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGR 240 + + E DD+ + + LA + V + A+GR Sbjct: 3 LPALELAERTDDNRPRSPRRARRAAPPVRTAPSRSLAAVP-DDTDELDVSAVAEVIARGR 61 Query: 241 SHATAQE--EILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMP 298 L L+P L ++D + + Sbjct: 62 EAGEISRSELRDVLESADIGIELLPALIARLNAVGIELLDE---------EEASDDATAA 112 Query: 299 KKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQV 358 ++ + + + + + ++S+ V L ++E L + Sbjct: 113 SRSTAEHAGTADLVRMYLREIGKVPLLNAAQEVELSKRVEAGLFAEYKLESVPDLPADLR 172 Query: 359 KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK 418 +D+ + G A AK+++V ANLRLV+S+AKKY+ RG+ LDL+QEGN+GL++AV+K Sbjct: 173 RDLGLLVKDGHA----AKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQEGNLGLIRAVEK 228 Query: 419 FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP 478 F+Y +GYKFSTYATWWIRQAI R++ADQARTIRIPVH++E INK+ R+ RQ++ +GREP Sbjct: 229 FDYAKGYKFSTYATWWIRQAIGRALADQARTIRIPVHVVEQINKITRLQRQLVSTLGREP 288 Query: 479 TPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTE 538 T EELA + MP +++ ++ + A++ +S+ET +GDD DS LGDFIED+ P D+A+ Sbjct: 289 TDEELALELDMPIEQVVELRRYAQDTVSLETSVGDDGDSVLGDFIEDSDATSPADAASYG 348 Query: 539 SLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKL 598 +++ +VL GL+ RE +V+R+RFG+ +TL EVG + +TRERIRQIE LR+L Sbjct: 349 AMQDEIENVLGGLSPREREVMRLRFGLADGKQHTLAEVGNRLGLTRERIRQIERDTLREL 408 Query: 599 RHPSRSEVLRSFLD 612 R P+ + LR FLD Sbjct: 409 RKPAVAGRLREFLD 422 Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 73/163 (44%), Gaps = 16/163 (9%) Query: 2 EQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPD 61 ++ S + ++ RG+E G ++ +E+ D L + + + +I +N +GI++++E Sbjct: 46 DELDVSAVAEVIARGREAGEISRSELRDVLESADIGIELLPALIARLNAVGIELLDEEEA 105 Query: 62 ADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAK 121 +DD A + E A T D VRMY+RE+G V LL E++++K Sbjct: 106 SDDATAASRSTAEHA----------------GTADLVRMYLREIGKVPLLNAAQEVELSK 149 Query: 122 RIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITG 164 R+E G+ + + V+ A L++ Sbjct: 150 RVEAGLFAEYKLESVPDLPADLRRDLGLLVKDGHAAKQQLVSA 192 >UniRef50_C1E4E8 Predicted protein n=2 Tax=Micromonas RepID=C1E4E8_9CHLO Length = 595 Score = 316 bits (811), Expect = 1e-84, Method: Composition-based stats. Identities = 142/457 (31%), Positives = 232/457 (50%), Gaps = 17/457 (3%) Query: 167 DPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRA 226 D +E+ D + +E ++D++ + E + A Sbjct: 137 DFEELSAKVAQLQAALAEVDNVGAVDRAELEEAYKIPSFEENDSADEREEVDAEAAAKPK 196 Query: 227 QYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERL 286 + K K + + + + V + +L + S + + + R Sbjct: 197 PKPKKKAAAKPKAAASTAPRAKRKTVKRVSTKTQLTGIVAEP--GSAQEANEASAAESRR 254 Query: 287 IMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQ 346 ++ + K+ +T + +L +++ ++ Sbjct: 255 NRRIARKNADTKKQT-----DSMKTYLKDIGTVSLLTGAEEVELAKRIQDLMYLNSVCER 309 Query: 347 IEEETG-------LTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGL 399 +EEE G + + + + + +RAK M++ANLRLV+SIAK+Y N+ + Sbjct: 310 LEEENGGKEPTRFMWAIECNITEQELERRLEEGKRAKNAMIQANLRLVVSIAKRYANKSM 369 Query: 400 QFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIET 459 F DLIQEG +GL++ +KF+++RGYKFSTYA WWIRQA+TRSI+DQ+RTIR+PVH+ E Sbjct: 370 SFQDLIQEGCVGLIRGAEKFDFKRGYKFSTYAHWWIRQAVTRSISDQSRTIRLPVHLFEI 429 Query: 460 INKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPI---GDDED 516 I++++++ RQM+ ++GR+PT EELA+ M M +KI+++ K + PIS+ + ++ Sbjct: 430 ISRMSKVERQMVLKLGRDPTHEELADAMEMTVEKIKQIKKASLVPISLSQTVNNSNGEDK 489 Query: 517 SHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEV 576 + D + D E P L+ +VL L RE VLR+R+G+D TLEE+ Sbjct: 490 RTVEDTLIDDYTEHPEGETGKVLLKEDLENVLNTLNPRERDVLRLRYGLDDGRVKTLEEI 549 Query: 577 GKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 G F VTRERIRQIEAKALRKLR PSR+ +LR +L + Sbjct: 550 GNVFSVTRERIRQIEAKALRKLRQPSRNGILREYLPN 586 >UniRef50_C1CW22 RNA polymerase sigma factor n=3 Tax=Deinococci RepID=C1CW22_DEIDV Length = 547 Score = 314 bits (804), Expect = 7e-84, Method: Composition-based stats. Identities = 158/315 (50%), Positives = 212/315 (67%), Gaps = 7/315 (2%) Query: 301 NFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKD 360 + + N+ + + ++ E+ ++ + + + +EE+ L + Sbjct: 237 DDMPRAVSNDPVRQYLHEIGRVSLLTLEEEIALARRIEEGEEARKLLEEDVELDDRGRRR 296 Query: 361 INRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE 420 + R+M G A++ ++EANLRLV+SIAKKYT RGL FLDLIQEGN GL++AV+KFE Sbjct: 297 LMRQMEDG----ANARQGLIEANLRLVVSIAKKYTGRGLGFLDLIQEGNQGLIRAVEKFE 352 Query: 421 YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTP 480 YRR YKFSTYATWWIRQAI R+IADQARTIRIPVHM+ETINKL R +RQ+ QE+ RE T Sbjct: 353 YRRRYKFSTYATWWIRQAINRAIADQARTIRIPVHMVETINKLTRTARQLQQELSREATH 412 Query: 481 EELAERM--LMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTE 538 EE+AE M K+ +V K+++EP+S+ETPIGD++DS GDFI D L+ P+++A Sbjct: 413 EEIAEAMGPGWDAAKVEEVQKVSQEPVSLETPIGDEKDSFYGDFIPDENLDSPVENAAKT 472 Query: 539 SLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKL 598 L L+ LT REA VL+ R G+ ++TLEEVG++F VTRERIRQIE KALRKL Sbjct: 473 LLSEELEKALSKLTEREAMVLKFRKGLVDGREHTLEEVGQRFSVTRERIRQIENKALRKL 532 Query: 599 R-HPSRSEVLRSFLD 612 + H SR+ LR FLD Sbjct: 533 KYHESRTRKLRDFLD 547 Score = 68.5 bits (166), Expect = 7e-10, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 11/133 (8%) Query: 8 QLKLLVTRGKEQGYLTYAEVNDHLPE-------DIVDSDQIEDIIQMINDMGIQVMEEAP 60 ++ ++ G+ G L+ EV L D D ED+ + I+V + Sbjct: 147 SIQDMLKAGRAAGVLSSEEVAAALGLALEANGLDPESPDAFEDMQLYLAGQNIEVQDLDE 206 Query: 61 DADDLMLAEN----TADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGE 116 D D+ + AA + + + DPVR Y+ E+G V LLT E E Sbjct: 207 DEDEDTDDDAEVEEVPGARAATDDDEEKYFDDMPRAVSNDPVRQYLHEIGRVSLLTLEEE 266 Query: 117 IDIAKRIEDGINQ 129 I +A+RIE+G Sbjct: 267 IALARRIEEGEEA 279 >UniRef50_Q1J156 RNA polymerase sigma factor n=13 Tax=Bacteria RepID=Q1J156_DEIGD Length = 532 Score = 314 bits (804), Expect = 7e-84, Method: Composition-based stats. Identities = 159/315 (50%), Positives = 209/315 (66%), Gaps = 6/315 (1%) Query: 301 NFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKD 360 + + N+ + + + E+ ++ + + + +EE E Sbjct: 221 DDMPRAVSNDPVRQYLHEIGRVPLLTLEEEIALARRIEEGEEARKMLEE---AGDELDDR 277 Query: 361 INRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE 420 RR+ A++ ++EANLRLV+SIAKKYT RGL FLDLIQEGN GL++AV+KFE Sbjct: 278 ARRRLMRQMEDGAAARQGLIEANLRLVVSIAKKYTGRGLGFLDLIQEGNQGLIRAVEKFE 337 Query: 421 YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTP 480 YRR YKFSTYATWWIRQAI R+IADQARTIRIPVHM+ETINKL R +RQ+ QE+ REPT Sbjct: 338 YRRRYKFSTYATWWIRQAINRAIADQARTIRIPVHMVETINKLTRTARQLQQELSREPTY 397 Query: 481 EELAERM--LMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTE 538 EE+AE M K+ +V K+++EP+S+ETPIGD++DS GDFI D L+ P+D+A Sbjct: 398 EEIAEAMGPGWDAAKVEEVQKVSQEPVSLETPIGDEKDSFYGDFIPDENLDSPVDNAAKT 457 Query: 539 SLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKL 598 L L+ LT REA VL+ R G+ ++TLEEVG++F+VTRERIRQIE KALRKL Sbjct: 458 LLSEELEKALSKLTEREALVLKFRKGLVDGREHTLEEVGQRFNVTRERIRQIENKALRKL 517 Query: 599 R-HPSRSEVLRSFLD 612 + H SR+ LR FLD Sbjct: 518 KYHESRTRKLRDFLD 532 Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 10/132 (7%) Query: 8 QLKLLVTRGKEQGYLTYAEVNDHLPE-------DIVDSDQIEDIIQMINDMGIQVMEEAP 60 ++ L+ G+ G L+ E+ L D ++ ED+ + I+V + Sbjct: 132 SIQELLKVGRAAGLLSSEEIAAALAVALEANGLDPESAEAFEDMQLYLAGQNIEVQDLDE 191 Query: 61 DADDLMLAENTADEDAAEAAAQVLSS---VESEIGRTTDPVRMYMREMGTVELLTREGEI 117 + D L E AA + + DPVR Y+ E+G V LLT E EI Sbjct: 192 EDQDDDLEEGEEGAVTGAAANDDEEERYFDDMPRAVSNDPVRQYLHEIGRVPLLTLEEEI 251 Query: 118 DIAKRIEDGINQ 129 +A+RIE+G Sbjct: 252 ALARRIEEGEEA 263 >UniRef50_B7K1V2 RNA polymerase sigma factor n=13 Tax=cellular organisms RepID=B7K1V2_CYAP8 Length = 379 Score = 313 bits (802), Expect = 1e-83, Method: Composition-based stats. Identities = 148/323 (45%), Positives = 212/323 (65%), Gaps = 10/323 (3%) Query: 298 PKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSE------EVHRALQKLQQIEEET 351 + ++ + + +E+ +++ E+ R +K+ + Sbjct: 57 RRDPNKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERIREKMTEHMGRF 116 Query: 352 GLTIEQVKDINRRMSIGEAK---ARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEG 408 +E + IN + + R+AK +MV +NLRLV+SIAKKY NRGL F DLIQEG Sbjct: 117 PTDLEWSQAINMEWHAFQRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEG 176 Query: 409 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISR 468 ++GL++A +KF++ +GYKFSTYATWWIRQAITR+IADQ+RTIR+PVH+ ETI+++ + ++ Sbjct: 177 SLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTK 236 Query: 469 QMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTL 528 + QEM R+PT EE+A RM M +K+R + K A+ PIS+ETPIG +EDS LGDFIE Sbjct: 237 ILSQEMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG- 295 Query: 529 ELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIR 588 E P D + LR +VL L+ RE VLR+R+G+D TLEE+G+ F+VTRERIR Sbjct: 296 ENPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIR 355 Query: 589 QIEAKALRKLRHPSRSEVLRSFL 611 QIEAKALRKLRHP+R+ +L+ ++ Sbjct: 356 QIEAKALRKLRHPNRNSILKEYI 378 Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 14/124 (11%) Query: 33 EDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIG 92 +D D+ E+I M D + N + + +A + Sbjct: 18 PFFIDPDEGEEIELM------------TDEALDEVMANPEGKKTRKLSASRRRDPNKKKP 65 Query: 93 RTTDPVRMYMREMGTVELLTREGEIDIAKRIED--GINQVQCSVAEYPEAITYLLEQYDR 150 T D +R+Y++E+G + LL E EI++A++I D + +++ + E+ LE Sbjct: 66 YTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERIREKMTEHMGRFPTDLEWSQA 125 Query: 151 VEAE 154 + E Sbjct: 126 INME 129 >UniRef50_A8S2D4 RNA polymerase sigma factor n=2 Tax=Clostridium RepID=A8S2D4_9CLOT Length = 406 Score = 312 bits (800), Expect = 2e-83, Method: Composition-based stats. Identities = 141/284 (49%), Positives = 204/284 (71%), Gaps = 3/284 (1%) Query: 328 EKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLV 387 E+L + + L++I LT E+ D+ RR S G+ + A +++VEANLRLV Sbjct: 125 ERLLEGVSTADPIREYLKEIGSIALLTPEEESDLARRKSEGDVE---AGRKLVEANLRLV 181 Query: 388 ISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA 447 +SIAK+YT RG+ FLDL+QEGN+GLMKAV+KF+Y +GY+ STYATWW++Q+ITRS+ADQ+ Sbjct: 182 VSIAKRYTGRGMSFLDLVQEGNLGLMKAVEKFDYAKGYRLSTYATWWVKQSITRSLADQS 241 Query: 448 RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISM 507 RTIR+PVHM+E +NK+ R R + ++GREP+ EE+AE + M ++ ++++ + + +S+ Sbjct: 242 RTIRLPVHMVEAVNKIRRAQRSLSVKLGREPSMEEVAEEVNMSGKRVAELIQASGDTVSL 301 Query: 508 ETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDM 567 ETP+GD+E S+LGDF+ D D A + LR +L GL RE +V+ +RFG++ Sbjct: 302 ETPVGDEEGSNLGDFVADDANASTEDKAESFLLREEIDSMLQGLNPREREVIILRFGLET 361 Query: 568 NTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 TLEEVGK+F+VTRERIRQIE ALRKLR+PS+S+ +R FL Sbjct: 362 GHPLTLEEVGKRFNVTRERIRQIETAALRKLRNPSKSKKIRDFL 405 Score = 73.1 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 72/197 (36%), Gaps = 40/197 (20%) Query: 4 NPQSQLKLLV-TRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVM------ 56 +L+ LV ++G L +V DH + + +++ED+ + G+ + Sbjct: 5 ELSKRLEQLVGEAAAQEGRLEMTQVLDHFRDVQMTPEEMEDVYLKLERKGVHIQAPEEPE 64 Query: 57 ------EEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGR----------------- 93 + D D + + A E+ ++ + G Sbjct: 65 EELPEGDFLLDDDAELDQPSLAKEEFRWGRDRLDPDEMLDGGSMVSGGDEEEEEYDGYGQ 124 Query: 94 --------TTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLL 145 T DP+R Y++E+G++ LLT E E D+A+R +G + + E + ++ Sbjct: 125 ERLLEGVSTADPIREYLKEIGSIALLTPEEESDLARRKSEGDVEAGRKLVEA--NLRLVV 182 Query: 146 EQYDRVEAEEARLSDLI 162 R DL+ Sbjct: 183 SIAKRYTGRGMSFLDLV 199 >UniRef50_Q2JLG8 RNA polymerase sigma factor n=3 Tax=Cyanobacteria RepID=Q2JLG8_SYNJB Length = 320 Score = 311 bits (798), Expect = 4e-83, Method: Composition-based stats. Identities = 125/271 (46%), Positives = 183/271 (67%), Gaps = 3/271 (1%) Query: 344 LQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLD 403 L+++ L EQ + R ++ G A RAK+E+V ANLRLV+SIAKKY NRG+ FLD Sbjct: 47 LREMARYPLLNAEQEVKLGRLIAEGGAAGERAKRELVRANLRLVVSIAKKYLNRGVPFLD 106 Query: 404 LIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKL 463 LIQEG IGL++A +KFEY RGYKFSTYA WWIRQ ITR++A+Q R +RIPVHM+E +N++ Sbjct: 107 LIQEGTIGLIRAAEKFEYERGYKFSTYAYWWIRQGITRAVANQGRLVRIPVHMVEKLNQV 166 Query: 464 NRISRQMLQEMGREPTPEELAERMLMPEDKIRK---VLKIAKEPISMETPIGDDEDSHLG 520 RI R++ + + R PT E+AE + + DK+ +L+ ++ +S+ TP+G +ED L Sbjct: 167 KRIRRELTETLNRRPTQAEIAEALEISPDKLDALLTLLEAGRQTLSLHTPVGKEEDRELM 226 Query: 521 DFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQF 580 IED P L A ++L L+ RE ++L++R+G+ +TL E+G+ F Sbjct: 227 QLIEDANSLTPESQMDLHLLSAQLEEMLEQLSPREQEILKLRYGLKDGHLHTLSEIGQLF 286 Query: 581 DVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 ++RER+RQI+A+A+RKLRHP R E+L ++ Sbjct: 287 GLSRERVRQIQARAMRKLRHPRRQEILADWM 317 Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 35/263 (13%), Positives = 79/263 (30%), Gaps = 32/263 (12%) Query: 60 PDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDI 119 P+ ++ + + E + ++ + D V +++REM LL E E+ + Sbjct: 5 PNGTNVAVQNSPPPLKRVEVRLSKPGNRATQASLSEDSVGVFLREMARYPLLNAEQEVKL 64 Query: 120 AKRIEDGINQVQCSVAEY-PEAITYLLEQYDRVEAEEARLSDLI----TGFVDPNAEEDL 174 + I +G + + E + ++ + DLI G + + + Sbjct: 65 GRLIAEGGAAGERAKRELVRANLRLVVSIAKKYLNRGVPFLDLIQEGTIGLIRAAEKFEY 124 Query: 175 A--------------------------PTATHVGSELSQEDLDDDEDEDEEDGDDDSADD 208 V + E E + Sbjct: 125 ERGYKFSTYAYWWIRQGITRAVANQGRLVRIPVHMVEKLNQVKRIRRELTETLNRRPTQA 184 Query: 209 DNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRL-VPKQFD 267 + + E++ +K L R T+ E+++L E Sbjct: 185 EIAEALEISPDKLDALLTLLEAGRQTLSLHTPVGKEEDRELMQLIEDANSLTPESQMDLH 244 Query: 268 YLVNSMRVMMDRVRTQERLIMKL 290 L + M++++ +E+ I+KL Sbjct: 245 LLSAQLEEMLEQLSPREQEILKL 267 >UniRef50_B5YKM1 RNA polymerase sigma factor n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKM1_THEYD Length = 479 Score = 311 bits (797), Expect = 5e-83, Method: Composition-based stats. Identities = 155/406 (38%), Positives = 239/406 (58%), Gaps = 20/406 (4%) Query: 210 NSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKL--SEVFKQFRLVPKQFD 267 P L +E+ EL + + IK + Q+ + ++ E + K + Sbjct: 86 MGDIPILTKEEEVELAKKLQEGKSIIKETVMGLSLYQKILEEINKEEDSETLTEEDKAEE 145 Query: 268 YLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWS 327 L ++ + + + E++ K+ G+ + Sbjct: 146 ALSRTIIRLENLINDIEKIEQKI--------------KEYGSLKELRKQINEKKRVGENT 191 Query: 328 EKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLV 387 ++L ++ +E+H ++K+ E E+GL I+++K+I +++ + K E++ NLRLV Sbjct: 192 KQLENLYKEIHAEIKKI---ENESGLKIDELKNIWQKIYKAKCLVEDTKNELITRNLRLV 248 Query: 388 ISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA 447 ++IAK Y RGL LDLI+EGNIGLMKAVDKF+Y +G+KFSTYATWWIRQAITR++ DQ Sbjct: 249 VNIAKNYVGRGLPLLDLIEEGNIGLMKAVDKFKYEKGFKFSTYATWWIRQAITRALIDQT 308 Query: 448 RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISM 507 +TIR+PVHM+E N++ + SR++ Q++GREP EE+AE++ +P K+ +V + ++PI + Sbjct: 309 KTIRVPVHMMEFYNRVTKASRELTQQLGREPNNEEIAEKLGVPVRKVEEVFRAIQDPIGL 368 Query: 508 ETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDM 567 +TPIG DED+ L DFI D T P+ A L +L LT +E KV++MRFGI Sbjct: 369 QTPIG-DEDTELEDFIGDKTSPSPVSEAERTELSEHIQRILKTLTPKEEKVIKMRFGIGE 427 Query: 568 NTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 + D+TLEEVG+ +TRER+RQIE KALRKL+HPSR +L+ D Sbjct: 428 DRDHTLEEVGRYLSITRERVRQIETKALRKLKHPSRMRLLKMLTSD 473 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 52/249 (20%), Positives = 102/249 (40%), Gaps = 32/249 (12%) Query: 6 QSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDL 65 + + +V GK++G LTY E+N+ LP + ++IED+I +++DMG++V++E Sbjct: 4 RDIFEEIVNLGKKRGKLTYDEINEALPSEYYSPEEIEDLIDVLSDMGVRVVDE------- 56 Query: 66 MLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIED 125 E E D V+ Y MG + +LT+E E+++AK++++ Sbjct: 57 ----------DEEEVFLEEEEEIEEEEHVEDLVQAYFNSMGDIPILTKEEEVELAKKLQE 106 Query: 126 GINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSEL 185 G + ++ +V +LE+ ++ E E EED A A Sbjct: 107 GKSIIKETVMGLSL-YQKILEEINKEEDSETL------------TEEDKAEEALSRTIIR 153 Query: 186 SQEDLDDDEDEDE--EDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHA 243 + ++D E ++ ++ + + E +L Y IK Sbjct: 154 LENLINDIEKIEQKIKEYGSLKELRKQINEKKRVGENTKQLENLYKEIHAEIKKIENESG 213 Query: 244 TAQEEILKL 252 +E+ + Sbjct: 214 LKIDELKNI 222 >UniRef50_Q1ATP3 RNA polymerase sigma factor n=2 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1ATP3_RUBXD Length = 366 Score = 311 bits (796), Expect = 6e-83, Method: Composition-based stats. Identities = 139/274 (50%), Positives = 194/274 (70%), Gaps = 3/274 (1%) Query: 338 HRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNR 397 L +I LT + + +S G +R+K ++VEANLRLV+SIAKKY NR Sbjct: 95 DSIRMYLAEIGRVPLLTHADEIRLAKAISRG---CKRSKDKLVEANLRLVVSIAKKYRNR 151 Query: 398 GLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMI 457 G+ FLDLIQEGNIGL++A +KF+YR+G+KFSTYATWWIRQAITR+IAD+ RTIRIPVHM+ Sbjct: 152 GVSFLDLIQEGNIGLIRAAEKFDYRKGFKFSTYATWWIRQAITRAIADKGRTIRIPVHMV 211 Query: 458 ETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDS 517 E +NK +R R+M Q +GREPT EE+AE + +P +++ ++ +I++ IS+ETP+GDDE S Sbjct: 212 EKVNKYHRTQRRMTQALGREPTDEEVAEELGVPVEEVLRLQEISQRSISLETPVGDDESS 271 Query: 518 HLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVG 577 LGDF+ED + P D+ + L+ + L L RE +++ MRFG+ + TLEEVG Sbjct: 272 SLGDFLEDASAVTPTDAVSESLLKLHLREALDELPERERQIIEMRFGMKDDRPRTLEEVG 331 Query: 578 KQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 ++FD+TRER+RQI+ K L LR R++ LR +L Sbjct: 332 REFDITRERVRQIQMKTLNLLREQRRTQNLREYL 365 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 38/152 (25%), Positives = 72/152 (47%), Gaps = 7/152 (4%) Query: 11 LLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLAEN 70 L+++G+ QG+L+ +V D + E + D+ E++ + + I +++E + + E Sbjct: 15 ELLSKGRSQGFLSAEDVADLVREGDLSPDEAEELYATLEEEDITLVDEELEGAAEVTPER 74 Query: 71 TADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQV 130 A + A+Q+ +V T D +RMY+ E+G V LLT EI +AK I G + Sbjct: 75 AAGREGDNPASQLAHAVA-----TGDSIRMYLAEIGRVPLLTHADEIRLAKAISRGCKRS 129 Query: 131 QCSVAEYPEAITYLLEQYDRVEAEEARLSDLI 162 + + E + ++ + DLI Sbjct: 130 KDKLVEA--NLRLVVSIAKKYRNRGVSFLDLI 159 >UniRef50_D2AWC8 RNA polymerase sigma factor n=3 Tax=Streptosporangineae RepID=D2AWC8_STRRD Length = 452 Score = 310 bits (795), Expect = 8e-83, Method: Composition-based stats. Identities = 128/297 (43%), Positives = 191/297 (64%), Gaps = 4/297 (1%) Query: 314 TWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKAR 373 T+ + + + ++++ + L ++E E GL+ D+ G Sbjct: 158 TYLKSIGRRTLLTAAQEVELAKRIEAGLYAESKLEAEPGLSAAARDDLEWVAEDGRR--- 214 Query: 374 RAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW 433 AK M+EANLRLV+S+AKKYT+RG+ LD++QEGN+GL++AV+KF+Y +GYKFSTYA W Sbjct: 215 -AKDHMLEANLRLVVSVAKKYTDRGMALLDVVQEGNLGLIRAVEKFDYTKGYKFSTYAMW 273 Query: 434 WIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDK 493 WIRQAI R AD ARTIR+PVH++E ++KL+R+ R M Q +GREPTPEELA + D+ Sbjct: 274 WIRQAIQRGFADSARTIRLPVHVLEMLSKLSRVERDMHQRLGREPTPEELAVELDKTPDQ 333 Query: 494 IRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTA 553 I ++L+ +++PIS+ IG+D ++ +GD IED + + L VL L+ Sbjct: 334 IEELLRTSRQPISLNATIGEDGETTIGDLIEDVDSPEASEVVDRQLLGEQLRGVLGNLSP 393 Query: 554 REAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSF 610 REAK++ +RFG+ +TL+E+GK +TRERIRQ+E ++L KLRHPS + L + Sbjct: 394 REAKIMALRFGLVDGKPHTLDEIGKHLGLTRERIRQLEKESLSKLRHPSNTRPLLDW 450 Score = 68.1 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 71/208 (34%), Gaps = 52/208 (25%) Query: 4 NPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQV-------- 55 + L+ L+ RG+ QG+L+ AE+ E + + I++ + + G+ + Sbjct: 11 EAPTTLEQLLDRGRVQGHLSLAELRHAFAEAGISPTEGRSILRELTEAGVSLAAENEPAL 70 Query: 56 -------------------------------------MEEAPDADDLMLAENTADEDAA- 77 + P A D A A ++ Sbjct: 71 AAGAKKPAAKSTARKTTTRKTKAASDKTAAPENNKSTVRAEPAAKDRKDAGPEAGDEEWT 130 Query: 78 -----EAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQC 132 E A+ ++ + D V Y++ +G LLT E+++AKRIE G+ + Sbjct: 131 APEEAELEAEPTLDLDDQSSVMGDSVHTYLKSIGRRTLLTAAQEVELAKRIEAGLY-AES 189 Query: 133 SVAEYPEAITYLLEQYDRVEAEEARLSD 160 + P + + V + R D Sbjct: 190 KLEAEPGLSAAARDDLEWVAEDGRRAKD 217 >UniRef50_C7H329 RNA polymerase sigma factor n=2 Tax=Faecalibacterium prausnitzii RepID=C7H329_9FIRM Length = 461 Score = 310 bits (794), Expect = 1e-82, Method: Composition-based stats. Identities = 152/409 (37%), Positives = 222/409 (54%), Gaps = 15/409 (3%) Query: 196 EDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILK--LS 253 +DE DGD + + E A EL D + A +E+L + Sbjct: 48 DDEADGDTSLDVEGIMAEVESAEANSDELGLGDENEDDPAEENPADLKAAMDELLDDPVK 107 Query: 254 EVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCK----MPKKNFITLFTGN 309 KQ +P + + I++ ++ + K + F + Sbjct: 108 NYLKQIGQIPLLSAEQEVDLSKRIHAGAEA-AHILQADRQKYGAPEYIKKNSARFSFEED 166 Query: 310 ETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGE 369 E S ++ + + ++ E ++ + + Sbjct: 167 ENSRSYTEDLDEDG--------NTKSSEDDEEKAAEEEAMEAVENGPLTEERRQELLKIR 218 Query: 370 AKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFST 429 A++ + EANLRLV+SIAKK+ L FLDLIQEGNIGL+KA +KF+ RG++FST Sbjct: 219 RDGLNARRSLSEANLRLVVSIAKKHVGHNLAFLDLIQEGNIGLIKAAEKFDCDRGFRFST 278 Query: 430 YATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLM 489 YATWWIRQAITR+IADQARTIRIPVHM+ETIN++ + + Q++ + G EPTPEELA+ M M Sbjct: 279 YATWWIRQAITRAIADQARTIRIPVHMVETINRMRQATNQLVYQNGHEPTPEELAKAMDM 338 Query: 490 PEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLA 549 +++R++ ++A+EP S+E+P+G++EDS LGDF+ D E P +A + + L Sbjct: 339 SVERVREIQRMAQEPASLESPVGEEEDSSLGDFVADENAEAPGKAADRAMVAQQINQALK 398 Query: 550 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKL 598 LT RE KV+R+RFG+D TLEEVG+ F VTRER+RQIEAKA+RKL Sbjct: 399 SLTPREEKVIRLRFGLDDGRPRTLEEVGRDFGVTRERVRQIEAKAIRKL 447 Score = 73.1 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 100/246 (40%), Gaps = 37/246 (15%) Query: 9 LKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDAD----- 63 LK L+T+G +G LT E + +D +E + ++ + GI+++++ D D Sbjct: 5 LKELLTKG--EGTLTAGEAKTLASQCRMD---VETLYTLLEERGIKILDDEADGDTSLDV 59 Query: 64 -----DLMLAENTADE----DAAEAAAQVLSSVESEIGRT---TDPVRMYMREMGTVELL 111 ++ AE +DE D E + + + DPV+ Y++++G + LL Sbjct: 60 EGIMAEVESAEANSDELGLGDENEDDPAEENPADLKAAMDELLDDPVKNYLKQIGQIPLL 119 Query: 112 TREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAE 171 + E E+D++KRI G A+ + ++ AR S E Sbjct: 120 SAEQEVDLSKRIHAGAEAAHILQAD-----RQKYGAPEYIKKNSARFSF----------E 164 Query: 172 EDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVT 231 ED + + ++DE++ ++ +N E R++ ++R + Sbjct: 165 EDENSRSYTEDLDEDGNTKSSEDDEEKAAEEEAMEAVENGPLTEERRQELLKIRRDGLNA 224 Query: 232 RDTIKA 237 R ++ Sbjct: 225 RRSLSE 230 >UniRef50_Q1Q6A4 RNA polymerase sigma factor n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q6A4_9BACT Length = 491 Score = 309 bits (791), Expect = 2e-82, Method: Composition-based stats. Identities = 159/529 (30%), Positives = 254/529 (48%), Gaps = 68/529 (12%) Query: 84 LSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITY 143 + E E R D VR+Y+ EM + LLT EI +AK+I + V + A+ Sbjct: 27 EWNQEEEKSRDYDSVRLYLNEMAKIPLLTPAEEIYLAKKIRVMSRLLHRKVLGFDYALEM 86 Query: 144 LLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDD 203 + + VE+E + + + + V S + + Sbjct: 87 YIRLLEGVESESELVQFVELSAAREQNRDAVVEQIHAVTSNIRK---------------- 130 Query: 204 DSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVP 263 ++++ + +R + + +I + R A +E+ +S + V Sbjct: 131 ---SIESNLKDYEKIRRGNIVRDKKLRVHKSILVRKRM---AIKELESISVRSETILPVM 184 Query: 264 KQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMN 323 ++ +++++ +R RT R + Sbjct: 185 RELLEVLSTIADY-NRKRTVHRNFKR---------------------------------- 209 Query: 324 KPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEAN 383 E + +IE + +++K I ++ + A+K E N Sbjct: 210 -----------ELCKELSCDINEIEALFAMPAKELKKIIFSINSIYNEYVMARKRFSEGN 258 Query: 384 LRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSI 443 LRLV+SIAKKY RG+ F DLIQEGN GLM+AVDK++YR G+KFSTYATWWI+QAI R+ Sbjct: 259 LRLVVSIAKKYRKRGMAFHDLIQEGNTGLMRAVDKYDYRMGFKFSTYATWWIKQAIIRAT 318 Query: 444 ADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKE 503 ++ RTIRIPVHM++ INK +++ + E +A P +I ++L+I + Sbjct: 319 EEKVRTIRIPVHMMDVINKSTYVAKAGQGSSAEKIQLEAIARDTNTPLPEIYRLLQITSQ 378 Query: 504 PISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRF 563 PIS+ETPIG D ++ DFI+D ++ P+ A L+ VL L+ RE +++++RF Sbjct: 379 PISLETPIGSDGETMFEDFIQDKKIDAPIFLAQRSLLKEQIQKVLDTLSYREREIIKLRF 438 Query: 564 GIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 GI ++LEE+GK+F++TRERIRQIEA ALRKL+HP RS L FL+ Sbjct: 439 GISDGYTHSLEEIGKRFNITRERIRQIEAIALRKLQHPVRSRKLEGFLE 487 >UniRef50_D1J322 Whole genome shotgun sequence of line PN40024, scaffold_24.assembly12x (Fragment) n=3 Tax=Magnoliophyta RepID=D1J322_VITVI Length = 575 Score = 307 bits (787), Expect = 6e-82, Method: Composition-based stats. Identities = 105/330 (31%), Positives = 171/330 (51%), Gaps = 4/330 (1%) Query: 282 TQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRAL 341 T R + L P + + + ++ KL + E++ Sbjct: 248 TSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSEGIQDLLKLEKLQEDLEERF 307 Query: 342 QKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQF 401 + K + RR + G K +M+++N+RLVISIAK Y G+ Sbjct: 308 GVKPTFAQWAAAAGVDQKTLRRRTNYGIR----CKDKMIKSNIRLVISIAKNYQGAGMNI 363 Query: 402 LDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETIN 461 DL+QEG GL++ +KF+ +G+KFSTYA WWI+QA+ +S++DQ+RTIR+P HM+E Sbjct: 364 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATY 423 Query: 462 KLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGD 521 ++ +Q+ E GR P EE+AE + ++ VL K P S++ IG +++ + Sbjct: 424 RVKEARKQLYSENGRHPNNEEVAEATGLSMKRLNAVLLTPKAPRSLDQKIGINQNLKPSE 483 Query: 522 FIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFD 581 I D E + + +R VL L RE +V+R R+G++ TL+E+G+ Sbjct: 484 VIADPDAETAEELLIKQFMREDLEKVLNSLNPREKQVIRWRYGLEDGRTKTLQEIGELMG 543 Query: 582 VTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 V+RERIRQIE+ A RKL++ R++ L+ +L Sbjct: 544 VSRERIRQIESCAFRKLKNKRRTKHLQQYL 573 >UniRef50_P74565 RNA polymerase sigma factor rpoD n=23 Tax=cellular organisms RepID=RPOD_SYNY3 Length = 425 Score = 307 bits (787), Expect = 7e-82, Method: Composition-based stats. Identities = 153/422 (36%), Positives = 231/422 (54%), Gaps = 1/422 (0%) Query: 190 LDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEI 249 + + E + + I+ + + ++ T + + ++ + Sbjct: 4 TKEPLTKAESAELEQEIELSQYINTDDIDDDDIDVEDLEQEVAATEGKEKKVRKIRKDAV 63 Query: 250 LKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGN 309 K R+ ++ + + Q +++L + + + + Sbjct: 64 KKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARQIADLLELELIRDNLTLQLERQPSELE 123 Query: 310 ETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGE 369 W +K +++ L +Q Sbjct: 124 WGKQVWKLETAKQRLVGDKKKEPKKKDIDSYLANPDNELSLENEWSQQPNKNFAAFRRRL 183 Query: 370 AKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFST 429 RRAK +MV++NLRLV+SIAKKY NRGL F DLIQEG++GL++A +KF++ +GYKFST Sbjct: 184 FLDRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFST 243 Query: 430 YATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLM 489 YATWWIRQAITR+IADQ+RTIR+PVH+ ETI+++ + ++ + QEM R+PT EE+AE+M M Sbjct: 244 YATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIAEKMEM 303 Query: 490 PEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLA 549 +K+R + K A+ PIS+ETPIG +EDS LGDFIE E P D + LR +VL Sbjct: 304 TIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG-ETPEDEVSKNLLREDLENVLD 362 Query: 550 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRS 609 L+ RE VLR+R+G+D TLEE+G+ F+VTRERIRQIEAKALRKLRHP+R+ +L+ Sbjct: 363 TLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKE 422 Query: 610 FL 611 ++ Sbjct: 423 YI 424 Score = 44.2 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 2/129 (1%) Query: 64 DLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRI 123 + + E A E + ++ + T D +R+Y++E+G + LL E EI++A++I Sbjct: 39 EDLEQEVAATEGKEKKVRKIRKDAVKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARQI 98 Query: 124 ED--GINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHV 181 D + ++ ++ E LE +V E L+ ++D+ + Sbjct: 99 ADLLELELIRDNLTLQLERQPSELEWGKQVWKLETAKQRLVGDKKKEPKKKDIDSYLANP 158 Query: 182 GSELSQEDL 190 +ELS E+ Sbjct: 159 DNELSLENE 167 >UniRef50_P26683 RNA polymerase sigma factor rpoD n=19 Tax=cellular organisms RepID=RPOD_ANASP Length = 390 Score = 307 bits (787), Expect = 8e-82, Method: Composition-based stats. Identities = 152/333 (45%), Positives = 209/333 (62%), Gaps = 5/333 (1%) Query: 279 RVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVH 338 + R + + ++ +A +L V E + Sbjct: 62 KAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRERLS 121 Query: 339 RALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRG 398 L++ + E + R+ IG AK +MV++NLRLV+SIAKKY NRG Sbjct: 122 EKLERDPRDSEWAEAVQLPLPAFRYRLHIGRR----AKDKMVQSNLRLVVSIAKKYMNRG 177 Query: 399 LQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIE 458 L F DLIQEG++GL++A +KF++ +GYKFSTYATWWIRQAITR+IADQ+RTIR+PVH+ E Sbjct: 178 LSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYE 237 Query: 459 TINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSH 518 TI+++ + ++ + QEMGR+PT EE+A RM M +K+R + K A+ PIS+ETPIG +EDS Sbjct: 238 TISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSR 297 Query: 519 LGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGK 578 LGDFIE E P D + LR VL L+ RE VLR+R+G+D TLEE+G+ Sbjct: 298 LGDFIESDG-ETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQ 356 Query: 579 QFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 F+VTRERIRQIEAKALRKLRHP+R+ VL+ ++ Sbjct: 357 IFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 389 Score = 52.3 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 57/115 (49%), Gaps = 3/115 (2%) Query: 40 QIEDIIQMINDMGIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVR 99 +++D++ D + + ++ + L + D + +AA + + T D +R Sbjct: 25 ELDDLLIE-EDEDLLLADDGDIDEFLEPQTDEDDAKSGKAAKSRRRTQSKKKHYTEDSIR 83 Query: 100 MYMREMGTVELLTREGEIDIAKRIED--GINQVQCSVAEYPEAITYLLEQYDRVE 152 +Y++E+G + LL + EI++A++I D + +V+ ++E E E + V+ Sbjct: 84 LYLQEIGRIRLLRADEEIELARKIADLLELERVRERLSEKLERDPRDSEWAEAVQ 138 >UniRef50_Q7NB90 RNA polymerase sigma factor n=2 Tax=Mycoplasma RepID=Q7NB90_MYCGA Length = 644 Score = 306 bits (785), Expect = 1e-81, Method: Composition-based stats. Identities = 152/458 (33%), Positives = 235/458 (51%), Gaps = 10/458 (2%) Query: 163 TGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFA 222 + F N T EL ++ + + + D D + Sbjct: 182 SDFKHENYSSAFKETDFSEQDELDDKEFNLSDFFSDSKLDIDQPITAQKRQRGRKPKHAP 241 Query: 223 ELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRT 282 +V + ++A ++ QE I + + + + + + + Sbjct: 242 SNEKNDLVYHEVLEASSKTKNNDQESIRATKTLLAKAKATKSLSNEEIIDVFKNYE-FTE 300 Query: 283 QERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQ 342 E L + ++ K+ ++ + + + K ++V ++ Sbjct: 301 AEDLEILEELKDNKIKLEDNVEEKISLFRKNQDLSEIDKNLDDLISKGASTKDKVEDNVK 360 Query: 343 KLQQI--EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQ 400 + E+++ S A ++V +NLRLV SIAKKY NRGL Sbjct: 361 AFLGTLGSSKILNFGEEIQIAKLLGSTDPETREYAINQLVTSNLRLVTSIAKKYLNRGLD 420 Query: 401 FLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI 460 F+DLIQEG+IGLMKA+ KF Y+ G KFSTYATWWIRQAITR+IADQART+RIPVHM+ETI Sbjct: 421 FVDLIQEGSIGLMKAISKFNYKLGNKFSTYATWWIRQAITRAIADQARTVRIPVHMVETI 480 Query: 461 NKLNRISRQMLQEMGREPTPEELAERM-----LMPEDKIRKVLKIAKEPISMETPIGDDE 515 NKL + R + Q++GR+PT EEL E M K+ + K+ +EP+S++ PIG DE Sbjct: 481 NKLIKTERMLTQQLGRDPTLEELTEAMGGQVNGFTPKKVADIKKLNQEPVSLDKPIGHDE 540 Query: 516 DSHLGDFIEDTTLELPLDSATTESLRAATHDV-LAGLTAREAKVLRMRFGIDM-NTDYTL 573 +S DF++D + P + + +++ + LT +E +++RMR+G+ + TL Sbjct: 541 ESQFVDFVKDRDILKPDEYTEKLIVTEHINELFINTLTKKEEQIIRMRYGLHPWHQQMTL 600 Query: 574 EEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 EEVG++F+VTRERIRQIE+KALRKL+HPS++ LRSFL Sbjct: 601 EEVGQKFNVTRERIRQIESKALRKLKHPSKNARLRSFL 638 Score = 72.0 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 25/163 (15%), Positives = 57/163 (34%), Gaps = 3/163 (1%) Query: 2 EQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPD 61 +Q K L+ + K L+ E+ D + +I++ + D I++ + + Sbjct: 264 DQESIRATKTLLAKAKATKSLSNEEIIDVFKNYEFTEAEDLEILEELKDNKIKLEDNVEE 323 Query: 62 ADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAK 121 L + + ++S S + D V+ ++ +G+ ++L EI IAK Sbjct: 324 KISLFRKNQDLS-EIDKNLDDLISKGASTKDKVEDNVKAFLGTLGSSKILNFGEEIQIAK 382 Query: 122 RIEDGINQVQCSVAEYPEA--ITYLLEQYDRVEAEEARLSDLI 162 + + + + + + DLI Sbjct: 383 LLGSTDPETREYAINQLVTSNLRLVTSIAKKYLNRGLDFVDLI 425 >UniRef50_A9AU99 RNA polymerase sigma factor n=2 Tax=Chloroflexi (class) RepID=A9AU99_HERA2 Length = 391 Score = 306 bits (784), Expect = 2e-81, Method: Composition-based stats. Identities = 125/317 (39%), Positives = 205/317 (64%), Gaps = 4/317 (1%) Query: 296 KMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTI 355 + +K + ++ + + +E+ +++++ + Q++ E T Sbjct: 79 NLRRKKTLYSEAVEDSVQMYLREIGEVELLTAEEEITLAKQIETGRKAEHQLQTEQYATW 138 Query: 356 EQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKA 415 ++ + RR+ G ++++ +ANLRLV+S+AKKY + F+DLIQEGNIGLM+A Sbjct: 139 DERTALERRVDFGNEG----RRKLTQANLRLVVSVAKKYIGNHMSFMDLIQEGNIGLMRA 194 Query: 416 VDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMG 475 V+KF+YR+G +FSTYATWWIRQA+TR+IA+Q+RTIR+PVH+ E+I ++ R++ Q+ Q + Sbjct: 195 VEKFDYRKGNRFSTYATWWIRQAVTRAIAEQSRTIRLPVHLSESIAQMRRVAYQLEQALQ 254 Query: 476 REPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSA 535 RE TP+ELA+ + + K++++L + +P+S+E PIG + +G+F+ D T E PL+ A Sbjct: 255 REATPDELADALGVSLRKVKRMLNASVQPVSLEQPIGKEGQGRVGEFLADDTDEAPLEQA 314 Query: 536 TTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKAL 595 T L+ D L+ L RE ++L +R+G+ TLEEVG +F +TRER RQIEA+A+ Sbjct: 315 TRMMLQDELADALSQLPDRERQILLLRYGLADGKRRTLEEVGAEFGITRERTRQIEAEAM 374 Query: 596 RKLRHPSRSEVLRSFLD 612 R LR P+ + LR++LD Sbjct: 375 RHLRQPNVGQHLRAYLD 391 Score = 54.6 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 43/106 (40%), Gaps = 2/106 (1%) Query: 56 MEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREG 115 +E+AP+ +L N D + A + D V+MY+RE+G VELLT E Sbjct: 55 LEDAPEGWELEPGFNDEDVEL--AIVNLRRKKTLYSEAVEDSVQMYLREIGEVELLTAEE 112 Query: 116 EIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDL 161 EI +AK+IE G E RV+ L Sbjct: 113 EITLAKQIETGRKAEHQLQTEQYATWDERTALERRVDFGNEGRRKL 158 >UniRef50_P38023 RNA polymerase sigma factor rpoD1 n=7 Tax=cellular organisms RepID=RPOD1_SYNE7 Length = 399 Score = 305 bits (782), Expect = 2e-81, Method: Composition-based stats. Identities = 151/315 (47%), Positives = 207/315 (65%), Gaps = 5/315 (1%) Query: 297 MPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIE 356 + ++ +A L + +E+ L +L E Sbjct: 89 DSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDS 148 Query: 357 QVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV 416 + + RR + RRAK +MV++NLRLV+SIAKKY NRGL F DLIQEG++GL++A Sbjct: 149 PLDEFRRR----LFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAA 204 Query: 417 DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGR 476 +KF++ +GYKFSTYATWWIRQAITR+IADQ+RTIR+PVH+ ETI+++ + ++ + QEMGR Sbjct: 205 EKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGR 264 Query: 477 EPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSAT 536 +PT EE+A RM M +K+R + K A+ PIS+ETPIG +EDS LGDFIE E P D Sbjct: 265 KPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG-ETPEDEVA 323 Query: 537 TESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALR 596 LR VL+ L+ RE VLR+R+G+D TLEE+G+ F+VTRERIRQIEAKALR Sbjct: 324 KNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALR 383 Query: 597 KLRHPSRSEVLRSFL 611 KLRHP+R+ +L+ ++ Sbjct: 384 KLRHPNRNSILKEYI 398 Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 48/103 (46%), Gaps = 4/103 (3%) Query: 55 VMEEAPDADDLMLAENTADED--AAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLT 112 V+E A + DED + A + + T D +R+Y++E+G + LL Sbjct: 46 VVEPATTIAPTADVDAIDDEDSVGEDEDAAAKAKAKVRKTYTEDSIRLYLQEIGRIRLLR 105 Query: 113 REGEIDIAKRIED--GINQVQCSVAEYPEAITYLLEQYDRVEA 153 + EI++A++I D + +++ + E + + E V++ Sbjct: 106 ADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDS 148 >UniRef50_B8LLW6 Putative uncharacterized protein n=2 Tax=Picea sitchensis RepID=B8LLW6_PICSI Length = 592 Score = 305 bits (780), Expect = 4e-81, Method: Composition-based stats. Identities = 112/322 (34%), Positives = 181/322 (56%), Gaps = 9/322 (2%) Query: 300 KNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVK 359 K I+ S + + + ++S + ++ + + T ++ Sbjct: 270 KKAISSKGHISDSIRLLRDWSSSRLLTASEEVELSRGIQDLIKLDRIRAKYKEKTGKEPT 329 Query: 360 DINRRMSIG---------EAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNI 410 IG R + +++ NLRLVIS+AK Y NRGL DLIQ G++ Sbjct: 330 LAQWAEVIGVDQKTLKMRLEVGRDSFDKIINCNLRLVISVAKNYQNRGLSLQDLIQAGSM 389 Query: 411 GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQM 470 GLM++ +KF+Y RG+KFSTYA WWIRQ+IT+++ +Q+RTIR+PVH++E++ ++ R + Sbjct: 390 GLMRSAEKFDYSRGFKFSTYAYWWIRQSITKALTEQSRTIRLPVHIVESMTRIRTAWRLL 449 Query: 471 LQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLEL 530 QE R+PT EE+AE + ++R V + ++ P S++ +G D D + + DT E Sbjct: 450 YQEHKRDPTKEEVAEVAGISMTRLRHVTRCSRVPTSLDRCVGKDMDEKFSEIVADTNSES 509 Query: 531 PLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQI 590 + E + VL LTARE +V+R+R+G+D +L EVG+ F ++RER+RQI Sbjct: 510 TETIVSKELFKKDLDRVLDTLTAREKQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQI 569 Query: 591 EAKALRKLRHPSRSEVLRSFLD 612 E KA+RKLR R++ L+ +LD Sbjct: 570 EMKAMRKLRQNHRTQHLKHYLD 591 >UniRef50_Q8S9C8 RNA polymerase sigma factor n=1 Tax=Cyanophora paradoxa RepID=Q8S9C8_CYAPA Length = 427 Score = 303 bits (777), Expect = 1e-80, Method: Composition-based stats. Identities = 121/318 (38%), Positives = 182/318 (57%), Gaps = 10/318 (3%) Query: 300 KNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVK 359 +FI E ++ +L V + + + + + +E Q Sbjct: 106 NSFIKEVGSFELLSAEEEIELSRQIRDLVQLETVKKRLAARIGREPREDEWAMAAGTQPG 165 Query: 360 DINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRG-LQFLDLIQEGNIGLMKAVDK 418 K RRA+ +V++NLR V+SIAKKY N+ + DLIQEG+IGLMKA ++ Sbjct: 166 ---PAFQSRILKGRRARARLVQSNLRWVVSIAKKYANKHTMPLQDLIQEGSIGLMKAAER 222 Query: 419 FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP 478 F+ +G+KF TYATWWIRQAI RS+ DQ RTIR+PVH+ +++ + + +Q+ +GR P Sbjct: 223 FDLDKGFKFLTYATWWIRQAIFRSLQDQGRTIRLPVHVHDSLYLIKKTRQQLASRLGRIP 282 Query: 479 TPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSH-----LGDFIEDTTLELPLD 533 TPEELA+ + +P ++ + + A PIS+E+PI + S LGDFIE L+ P + Sbjct: 283 TPEELADELNIPVSRLAFITQAASLPISLESPISSETSSTKARNNLGDFIESECLQ-PDE 341 Query: 534 SATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAK 593 LR +VLA L ARE ++RMR+G+ + TL+E+G+ +TRERIRQIE Sbjct: 342 QLERTMLREDLENVLATLKARERDIIRMRYGLVDGSPKTLDEIGEIVGLTRERIRQIEQS 401 Query: 594 ALRKLRHPSRSEVLRSFL 611 A+RKL+ P R +L ++ Sbjct: 402 AMRKLKAPYRKAILCDYI 419 >UniRef50_A9ESS1 RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9ESS1_SORC5 Length = 715 Score = 303 bits (776), Expect = 1e-80, Method: Composition-based stats. Identities = 130/498 (26%), Positives = 217/498 (43%), Gaps = 34/498 (6%) Query: 119 IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTA 178 +A+ + E + ++ +E R +D I + P A Sbjct: 237 LAQGGTATPEIAALGLLEDDQTEETVVRPRPAEILDEERTADFIDLDLGPLDRLPQPERA 296 Query: 179 THVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAK 238 + EL + + D + D EL + E + + Sbjct: 297 RNQDRELKDVEDGGGDSMLARYFRDMALHPVMGPDEELDTARAVERTEVEHWV--ALLSY 354 Query: 239 GRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMP 298 + + + + D V+ + M+ V K Sbjct: 355 LPAAEYILTALEEDVAKAGE-------------------DEVKAPQIAEMQKLVRLAKKQ 395 Query: 299 KKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQ- 357 K + T + AA + + R L + E++ E Sbjct: 396 KGKLLAEQEKPWTQLSEELAAAVRLPDSDRLWMARAFGIARDLVREPDFEDDVSDPEETR 455 Query: 358 -----------VKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQ 406 + R+ AK V+ANLRLV+SIA++Y L +DLIQ Sbjct: 456 PTRPRLPMSGSYRRYLDRVERSFQAQHDAKNRFVKANLRLVVSIARRYNRGRLPLIDLIQ 515 Query: 407 EGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRI 466 EGNIGLMKAV++F++ RGY+FSTYA+WWIR AI+R++AD+ R +RIPVHM++T N++ R Sbjct: 516 EGNIGLMKAVERFDHSRGYRFSTYASWWIRHAISRALADKGRAVRIPVHMLDTYNRVARA 575 Query: 467 SRQMLQEMGREPTPEELAERMLMPEDKIRKVLK-IAKEPISMETPIGDDEDSHLGDFIED 525 ++ ++ G EPT EEL + +P +K+ KV A+ P S++ P+GD++ DF+++ Sbjct: 576 TQAIIARTGHEPTIEELEKETGVPREKLDKVKDFYAETPFSLDRPVGDEDGRKFIDFLQE 635 Query: 526 TTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRE 585 P D +L LT E++++R RFG+D + TL+E+G +++++RE Sbjct: 636 ENALSPFDHLANRKWSDEVRRLLTTLTPIESRIIRWRFGLDDEDELTLKEIGDKYNLSRE 695 Query: 586 RIRQIEAKALRKLRHPSR 603 RIRQ++ +AL K+R R Sbjct: 696 RIRQLQEQALGKIRKQMR 713 >UniRef50_Q6AK94 RNA polymerase sigma factor n=3 Tax=Deltaproteobacteria RepID=Q6AK94_DESPS Length = 447 Score = 302 bits (773), Expect = 3e-80, Method: Composition-based stats. Identities = 130/315 (41%), Positives = 199/315 (63%), Gaps = 3/315 (0%) Query: 300 KNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRA--LQKLQQIEEETGLTIEQ 357 + I G+ + W ++ + + + ++ + I + Sbjct: 134 EAIIFAIRGDRSGVQEMVVLCERIDLWEKRDPTLKPKKQQLNFMRYSVTSASKKYPEIRE 193 Query: 358 VKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD 417 + ++ ++ AK M+ ANLRLV+SIAK+Y ++GL DLIQEGN+GLM+AV Sbjct: 194 LFELQAKLEAYSRSIEVAKDTMIRANLRLVVSIAKRYMHQGLTLADLIQEGNLGLMRAVF 253 Query: 418 KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE 477 +F+Y +G KFSTYA+WWIRQAITR+I D+ RTIR+PVH +E ++ + + +E+GRE Sbjct: 254 RFDYTKGNKFSTYASWWIRQAITRAILDKTRTIRLPVHFLELRSQFFKAFYALFKELGRE 313 Query: 478 PTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATT 537 PTP E+++ +P DKI +L+ ++EPIS+ETP+GDD DS LGDF+E+ + P ++ Sbjct: 314 PTPLEISKTTNLPMDKILSILEASREPISLETPVGDD-DSTLGDFLENQESQSPYEAVQN 372 Query: 538 ESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRK 597 L ++L+ L+ RE K++R+RFGI +YTLEE+GK+F+V+RERIRQIE KAL + Sbjct: 373 RELSGRVTEILSTLSDREEKIIRLRFGIGEKAEYTLEEIGKRFNVSRERIRQIEKKALNR 432 Query: 598 LRHPSRSEVLRSFLD 612 LRH SR + L+ F+D Sbjct: 433 LRHSSRRDKLKFFVD 447 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 72/157 (45%), Gaps = 5/157 (3%) Query: 6 QSQLKL-LVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADD 64 Q++LK L+ GK++G +++ +N +P+D+ D IE I + GI+++ + Sbjct: 7 QTELKEKLLETGKKEGCISFDALNKLIPDDVKDPTAIEKIFNFLGAHGIEIVTIEKSGEK 66 Query: 65 LMLA----ENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA 120 L+ E + + E S + E + + Y+REMG +LLT E E + Sbjct: 67 RTLSGEIWEKSEVDLELEIEDGAALSGDEESHESEETTTTYLREMGRFDLLTPEEEAKYS 126 Query: 121 KRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEAR 157 K I G + ++ + ++ +R++ E R Sbjct: 127 KTIRQGFEAIIFAIRGDRSGVQEMVVLCERIDLWEKR 163 >UniRef50_B5YKU3 RNA polymerase sigma factor n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKU3_THEYD Length = 427 Score = 301 bits (772), Expect = 4e-80, Method: Composition-based stats. Identities = 147/400 (36%), Positives = 234/400 (58%), Gaps = 12/400 (3%) Query: 214 PELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSM 273 P L++++ L + + + Q++I +LS VF + K + L + Sbjct: 39 PVLSKQEEKNLAKTITDKKMELIKELLHIPFVQKKIYELSNVFS--KNPEKAKEMLDDEE 96 Query: 274 RVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDV 333 + +++++ ER I + M +K F ++ + + ++ Sbjct: 97 EIDIEQIK--ERFIKVSENIKKIMRRKKTTKEF------LKKIFDIPLRDELTNMFVEEL 148 Query: 334 SEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKK 393 ++ R + K + ++ TG+T E+ D + + AK +M+E+NL+LV+SIAKK Sbjct: 149 -DKFRREIIKGENLQPITGMTNEEFLDHFMTIKKIFNEFTEAKNKMIESNLKLVVSIAKK 207 Query: 394 YTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIP 453 YT RGL DLIQEGNIGLMKAV+KFEY++G+KFSTY+TWWIRQ+I R+IA+ ++TIRIP Sbjct: 208 YTGRGLNLEDLIQEGNIGLMKAVEKFEYKKGFKFSTYSTWWIRQSINRAIAEHSKTIRIP 267 Query: 454 VHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGD 513 VH+I+ I K+N+I R++ Q EP EE++ + +P DKI L I+KEP+S++ + D Sbjct: 268 VHVIDNICKINKIYRELYQNSENEPDIEEISLNLNIPSDKIADFLAISKEPVSIDMSLRD 327 Query: 514 DEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTL 573 D DS L +FIED P + A + L+ V + L+ RE ++L R+GI+ +L Sbjct: 328 D-DSLLKEFIEDMNSPNPYEEALHDDLKHLIEKVFSLLSKREKEILMRRYGINEEKPKSL 386 Query: 574 EEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 +EVGK+F V+RERIRQIE +A+RKL+ R + LR F+ + Sbjct: 387 DEVGKEFSVSRERIRQIELRAMRKLKRLCRLKWLREFIRE 426 Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 37/290 (12%), Positives = 97/290 (33%), Gaps = 9/290 (3%) Query: 79 AAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYP 138 + ++ T D + +Y + + + +L+++ E ++AK I D ++ + P Sbjct: 9 EELAEKDQIVNKTSPTYDSLNLYFKCISSFPVLSKQEEKNLAKTITDKKMELIKELLHIP 68 Query: 139 EAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDE 198 + E + + +++ D + + + + + + + Sbjct: 69 FVQKKIYELSNVFSKNPEKAKEMLD---DEEEIDIEQIKERFIKVSENIKKIMRRKKTTK 125 Query: 199 EDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQ 258 E + E+ + R + + + G ++ + + + ++F + Sbjct: 126 EFLKKIFDIPLRDELTNMFVEELDKFRREIIKGENLQPITGMTNEEFLDHFMTIKKIFNE 185 Query: 259 F-----RLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCK-MPKKNFITLFTGNETS 312 F +++ +V+ + R E LI + + K + K + F + S Sbjct: 186 FTEAKNKMIESNLKLVVSIAKKYTGRGLNLEDLIQEGNIGLMKAVEKFEYKKGFKFSTYS 245 Query: 313 DTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDIN 362 W +I K + V + K+ +I E E DI Sbjct: 246 TWWIRQSINRAIAEHSKTIRIPVHVIDNICKINKIYRELYQNSENEPDIE 295 >UniRef50_A3ZWN2 RNA polymerase sigma factor n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZWN2_9PLAN Length = 516 Score = 301 bits (771), Expect = 5e-80, Method: Composition-based stats. Identities = 139/543 (25%), Positives = 221/543 (40%), Gaps = 75/543 (13%) Query: 70 NTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQ 129 +E E AA D +R Y+ EM LL+ E +R+ + Sbjct: 37 PPREEVGDEDAAPPSKDTTPSDAWDDDALRRYLNEMSRSPLLSANEERLATERVITARKR 96 Query: 130 VQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQED 189 Q + A+ + + RL V A + + Sbjct: 97 FQRRLFGCGVAVKQVEKLIVETLDGSRRLDRTFEITVTSAARKQAEMLKLQQALANLRNA 156 Query: 190 LDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEI 249 + D+ + + PE + + T Sbjct: 157 KQRNADDLQIL-----------LSPEPIERRNQAIERLIRRRYQTAI------------- 192 Query: 250 LKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGN 309 + L ++ + D + +L+ +LC ++ + + Sbjct: 193 ---------------LIEGLTLRIKFLPDILSRLGKLVQELCNQRSDLNSRTNF------ 231 Query: 310 ETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGE 369 A + W +K + E + R+ Sbjct: 232 -----QLPRQGAGAEVWVDKYQEFPETL---------------------VWQYPRIMQAH 265 Query: 370 AKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFST 429 RA++ + ANLRLV+SIAK + RGL +LDLIQEGN+GLM+AV+KF+ GYKF+T Sbjct: 266 EGLCRAQRAITSANLRLVVSIAKSFRGRGLSYLDLIQEGNLGLMRAVEKFDPSLGYKFAT 325 Query: 430 YATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLM 489 YATWWIRQA+ + +ADQ RTIR+P M + I K+N + QE EP E A++ + Sbjct: 326 YATWWIRQAVMKGLADQGRTIRLPARMQDRIQKINVAKAILSQEHRSEPPIELTAKQAEL 385 Query: 490 PEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLA 549 E ++ ++ + +S++ + +++D GD + E SA + L A + +L Sbjct: 386 TEREVVAADRLGRTIMSLD--VSNNDDDSFGDTLASGDAEQ--SSADEQRLPLAINQLLQ 441 Query: 550 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRS 609 LT+RE +++R RFG+ TLEEV + F VTRERIRQIE+ A+RKLR P L Sbjct: 442 ELTSREQEIVRRRFGMFDGRVQTLEEVSQAFSVTRERIRQIESAAIRKLRQPHLIRKLDD 501 Query: 610 FLD 612 FL+ Sbjct: 502 FLE 504 >UniRef50_B8HRG7 RNA polymerase sigma factor n=9 Tax=Cyanobacteria RepID=B8HRG7_CYAP4 Length = 455 Score = 301 bits (770), Expect = 6e-80, Method: Composition-based stats. Identities = 144/434 (33%), Positives = 224/434 (51%), Gaps = 10/434 (2%) Query: 188 EDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQE 247 + +DDDE E +D+S+ E + E AE ++ + ++ Sbjct: 20 DAMDDDERSGAESRHSGPRSEDDSVLEEDSLETLAEPGELDLLVEANGLEANGDGSLLED 79 Query: 248 EILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCK--MPKKNFITL 305 + E Q ++ LV + RVR R ++ + M Sbjct: 80 WPEEDVEEAVQLAGRGQRTTDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYMRLVELRDQ 139 Query: 306 FTGNET------SDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI-EEETGLTIEQV 358 + + +A L + E +L+ + E + Sbjct: 140 VQADHQPIQQYVHLIDIHDRLAAQLGHRPPLERWAREAGVVAGQLKTLLAEGKQAWATAI 199 Query: 359 KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK 418 + + + + RAK+ M++ANLRLV+S+AKKY NRGL+ LDLIQEG +GL +AV+K Sbjct: 200 GMMVGELDQIQKEGVRAKEHMIQANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEK 259 Query: 419 FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP 478 F+ +GY+FSTYA WWIRQ ITR+IA Q+RTIR+PVH+ E +NK+ + R++ QE G P Sbjct: 260 FDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKGHTP 319 Query: 479 TPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTE 538 + E++A + M ++R++L +S+ET +G D+D+ LGD +E L P + E Sbjct: 320 SIEDIATELEMTVPQVRELLVRVPRSVSLETKVGKDKDTELGDLLETDDL-SPEEMMMRE 378 Query: 539 SLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKL 598 SL +LA LT+RE V+ MRFG+ Y+L ++G+ D++RER+RQIEAKAL+KL Sbjct: 379 SLHRELEKLLADLTSRERDVISMRFGLGDGHAYSLADIGRALDLSRERVRQIEAKALQKL 438 Query: 599 RHPSRSEVLRSFLD 612 R P R +R +LD Sbjct: 439 RQPKRRNRVRDYLD 452 Score = 58.1 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 1/100 (1%) Query: 32 PEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEI 91 P DS ED ++ + + G ++ + + ED E + + Sbjct: 37 PRSEDDSVLEEDSLETLAEPG-ELDLLVEANGLEANGDGSLLEDWPEEDVEEAVQLAGRG 95 Query: 92 GRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQ 131 RTTD VR+Y++E+G V LL R+ E+ A++++ + V+ Sbjct: 96 QRTTDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYMRLVE 135 >UniRef50_C9LM97 RNA polymerase sigma factor n=1 Tax=Dialister invisus DSM 15470 RepID=C9LM97_9FIRM Length = 394 Score = 300 bits (768), Expect = 1e-79, Method: Composition-based stats. Identities = 155/260 (59%), Positives = 182/260 (70%), Gaps = 9/260 (3%) Query: 341 LQKLQQIEEETGLTIEQVKDINRRMSIGE---------AKARRAKKEMVEANLRLVISIA 391 L++ LT EQ + + + IG+ A AKKEM ANLRLV+SIA Sbjct: 118 RLYLRECGTTPLLTSEQEMKLAQTIEIGKMPEATDEQKRMAAEAKKEMANANLRLVVSIA 177 Query: 392 KKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIR 451 KKY RG+ FLDLIQEGN+GL+KAVDKF+Y +GYKFSTYATWWIRQAITRSIADQARTIR Sbjct: 178 KKYPGRGMPFLDLIQEGNMGLLKAVDKFDYTKGYKFSTYATWWIRQAITRSIADQARTIR 237 Query: 452 IPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPI 511 +PVHM+ETINK+NR+ R LQE GRE T EELA+ M +KIR+ K A++PIS+ETPI Sbjct: 238 VPVHMVETINKMNRVGRHFLQEHGREATNEELAKEMETSVEKIREAKKAAQDPISLETPI 297 Query: 512 GDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDY 571 G+ EDSHLGDFIED P D A R H +L LT RE V+ +R+GID T Sbjct: 298 GEKEDSHLGDFIEDQKTASPEDEAAATMRREQIHQLLETLTEREKGVIALRYGIDDGTQR 357 Query: 572 TLEEVGKQFDVTRERIRQIE 591 TLEEVGK F VTRERIRQIE Sbjct: 358 TLEEVGKYFGVTRERIRQIE 377 Score = 81.2 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 69/177 (38%), Gaps = 23/177 (12%) Query: 9 LKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADD---- 64 LK L + G + Y ++ E + S Q++ + + +++ G++++ E D+ Sbjct: 15 LKELQDKVNADGNIKYDDILLFTKEKSLTSKQLDSVFKALHEGGVEIIYEEDGKDEFRDG 74 Query: 65 ---------LMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREG 115 L+ + + + + + ++ TDPVR+Y+RE GT LLT E Sbjct: 75 ESEEEFEDELLEDGDAEADVDEKEWEKGDGDISADPAGITDPVRLYLRECGTTPLLTSEQ 134 Query: 116 EIDIAKRIEDG----------INQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLI 162 E+ +A+ IE G + + ++ + DLI Sbjct: 135 EMKLAQTIEIGKMPEATDEQKRMAAEAKKEMANANLRLVVSIAKKYPGRGMPFLDLI 191 >UniRef50_C9XJA1 RNA polymerase sigma factor n=5 Tax=Clostridium difficile RepID=C9XJA1_CLODC Length = 301 Score = 299 bits (766), Expect = 2e-79, Method: Composition-based stats. Identities = 120/271 (44%), Positives = 181/271 (66%), Gaps = 5/271 (1%) Query: 343 KLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL 402 L++IEE L+ + ++ + AK++ + +N RLV+SIAK+Y + L Sbjct: 34 YLKEIEEYKMLSAGEEVELA---KEIINSSSVAKEKFINSNYRLVVSIAKRYKRDSIDML 90 Query: 403 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 462 DLIQ GNIGL+KAV+K++Y++GYKFSTYATWWI+Q+ITR I D TIRIP+H+ + IN Sbjct: 91 DLIQAGNIGLIKAVEKYDYKKGYKFSTYATWWIKQSITRYIDDCENTIRIPIHLHQRINF 150 Query: 463 LNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDF 522 + + +++L + REPT +E+A+ + DK+ ++L+ K +S++TP+ +DEDS L +F Sbjct: 151 VKKKKQELLNVLLREPTIDEIADACGLEVDKVLELLRRDKNVVSLDTPLKEDEDSSLVEF 210 Query: 523 IEDTTL--ELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQF 580 I ++ + +L+ ++L GL +E +VLRMRFGID + TLE++GK F Sbjct: 211 IPSDADFKDVVIHEVEQHNLKEKIEELLTGLGEQEQQVLRMRFGIDDDDPKTLEQIGKVF 270 Query: 581 DVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 VTRERIRQIEAKA+RKLRHPS+ + L+ F Sbjct: 271 GVTRERIRQIEAKAIRKLRHPSKLKQLKHFY 301 >UniRef50_Q39515 Chloroplast RNA polymerase sigma subunit n=1 Tax=Cyanidium caldarium RepID=Q39515_CYACA Length = 591 Score = 299 bits (766), Expect = 2e-79, Method: Composition-based stats. Identities = 122/359 (33%), Positives = 207/359 (57%), Gaps = 11/359 (3%) Query: 266 FDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKP 325 + + ++ + + ++ VE+ + T+ ++T ++ Sbjct: 232 VEEVYSNSETEEAESQIESDELLDFIVEEVDPADVDLSTVEAKDDTIRSYLREIGRYQLL 291 Query: 326 WSEKLHDVSEE---VHRALQKLQQIEEETGLTIEQVKDI--------NRRMSIGEAKARR 374 + ++S++ + Q + EE G + + + ++ R+ Sbjct: 292 HPGEEIELSKQVCILMDLEQFQRSFREEHGKSPTESEWAQGCGYGDDVEKLREHIRDGRK 351 Query: 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 434 AK+ MV ANLRLV+SIAK+Y+NRG+ DLIQEG+IGL++ V+KF+ RG++FSTYATWW Sbjct: 352 AKERMVTANLRLVVSIAKRYSNRGVALQDLIQEGSIGLIRGVEKFDAERGFRFSTYATWW 411 Query: 435 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKI 494 IRQ+ITR+I+D +R+IR+PVH+ +TI+ + + ++ + E+GR P+ EE+ E + + K Sbjct: 412 IRQSITRAISDSSRSIRLPVHVHDTISLIRKQTKALQVELGRPPSEEEICESVGIDRAKY 471 Query: 495 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAR 554 R V++ ++ +S+ETP+ +D H E ++ + ++LR + VL L+ R Sbjct: 472 RLVMECSRNIVSLETPLRSGDDVHFLGESLIAPEERAEENCSRDTLRESIEKVLHCLSTR 531 Query: 555 EAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 E +V+RMRFG+ TLEEVG +F+VTRERIRQIE+KAL+KLR P+ + L +L + Sbjct: 532 EREVIRMRFGLTDGRPRTLEEVGSRFNVTRERIRQIESKALKKLRTPAENNFLDEYLGE 590 >UniRef50_B8G577 RNA polymerase sigma factor n=4 Tax=Chloroflexus RepID=B8G577_CHLAD Length = 314 Score = 298 bits (764), Expect = 3e-79, Method: Composition-based stats. Identities = 112/308 (36%), Positives = 190/308 (61%), Gaps = 4/308 (1%) Query: 306 FTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRM 365 + ++T + N A E+ +++ + + + +++ E L + K + ++ Sbjct: 9 RSASDTIVLYLNEIGAEPLLTFEQEQQLAQTIAQGRRAAERLTNEPSLHSTEKKRLAAQV 68 Query: 366 SIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGY 425 + GE A+ +++ +NLRLV+SIA++Y GL LDLIQEG+IGLM+AVDKF+ RG Sbjct: 69 AAGEQ----ARAQLINSNLRLVVSIARRYQGHGLTLLDLIQEGSIGLMRAVDKFDAGRGL 124 Query: 426 KFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAE 485 KFSTYAT+WIRQ+I R+IAD +RT+R+PVH+ E +++L R+ +++ Q++ REPT EELA Sbjct: 125 KFSTYATYWIRQSIGRAIADHSRTVRLPVHLGERLSRLARLRQELAQQLDREPTLEELAN 184 Query: 486 RMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATH 545 + +++ + + P S++ +D L + + D P D + L+A Sbjct: 185 AAGLSVEQVERAEQAGLAPTSLDEAHTEDGGGALSEILTDPLQPTPFDEVSEGMLQADVQ 244 Query: 546 DVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSE 605 L+ L+ RE +LR+R+G+D +TLE++G++ +TRER+RQ+E +ALRKLR PS Sbjct: 245 AALSQLSPRERNILRLRYGLDGEPMHTLEQIGQRLRLTRERVRQLEYEALRKLRDPSLYP 304 Query: 606 VLRSFLDD 613 L+ +++D Sbjct: 305 QLQGYVND 312 Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 29/70 (41%) Query: 95 TDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAE 154 +D + +Y+ E+G LLT E E +A+ I G + E T +V A Sbjct: 12 SDTIVLYLNEIGAEPLLTFEQEQQLAQTIAQGRRAAERLTNEPSLHSTEKKRLAAQVAAG 71 Query: 155 EARLSDLITG 164 E + LI Sbjct: 72 EQARAQLINS 81 >UniRef50_O22455 Sigma factor 2 n=8 Tax=core eudicotyledons RepID=O22455_ARATH Length = 574 Score = 298 bits (763), Expect = 4e-79, Method: Composition-based stats. Identities = 99/283 (34%), Positives = 158/283 (55%), Gaps = 4/283 (1%) Query: 329 KLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVI 388 KL + E+ + + K + +R+ G K +M+++N+RLVI Sbjct: 292 KLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHG----TLCKDKMIKSNIRLVI 347 Query: 389 SIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQAR 448 SIAK Y G+ DL+QEG GL++ +KF+ +G+KFSTYA WWI+QA+ +S++DQ+R Sbjct: 348 SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSR 407 Query: 449 TIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISME 508 IR+P HM+E ++ +Q+ E G+ P EE+AE + ++ VL K P S++ Sbjct: 408 MIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLD 467 Query: 509 TPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMN 568 IG +++ + I D D E +R VL L RE +V+R RFG++ Sbjct: 468 RKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDG 527 Query: 569 TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 TL+E+G+ V+RER+RQIE+ A RKL++ R+ L+ +L Sbjct: 528 RMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYL 570 >UniRef50_B9L1K5 RNA polymerase sigma factor n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L1K5_THERP Length = 340 Score = 296 bits (759), Expect = 1e-78, Method: Composition-based stats. Identities = 131/314 (41%), Positives = 194/314 (61%), Gaps = 6/314 (1%) Query: 300 KNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHR--ALQKLQQIEEETGLTIEQ 357 + F ++ E L + L+ I E LT E+ Sbjct: 28 EAFAEERAIEPVEAEIVEPEALLSDAELEDLFRSDPSLASDPLRLYLRDIAEAPLLTPEE 87 Query: 358 VKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD 417 ++ +R+ G+ + A + V +NLRLV+SIAK+Y RGL LDLIQEGNIGLM+AV+ Sbjct: 88 EVELAKRIKEGDTE---ALQRFVRSNLRLVVSIAKRYVGRGLSLLDLIQEGNIGLMRAVE 144 Query: 418 KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE 477 KF++RRGY+FSTYATWWIRQAITR+IADQ RTIR+PVHM ++I + +R + Q+ QE+GR+ Sbjct: 145 KFDWRRGYRFSTYATWWIRQAITRAIADQGRTIRLPVHMTDSITRYHRTTTQLAQELGRQ 204 Query: 478 PTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATT 537 PTPEE+AE M + +KI ++++ A+ +S++ P+ +++++ LGD I D + P + A Sbjct: 205 PTPEEIAEAMSVQPEKIAQIVRAAQRAVSLDQPLSEEDETSLGDLIADELAQSPEELAEE 264 Query: 538 ESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRK 597 +R ++L LT RE VL++R+G+ TL EVG ++RER+RQIE +ALRK Sbjct: 265 SLMRRDIAEILEMLTPRERLVLQLRYGLSDGEPRTLAEVGDLLGISRERVRQIENEALRK 324 Query: 598 LRHPSRSEVLRSFL 611 LR +R E L + Sbjct: 325 LRRIAR-ERLAEYY 337 Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 2/104 (1%) Query: 59 APDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID 118 A + + + +A + A++ S+ +DP+R+Y+R++ LLT E E++ Sbjct: 31 AEERAIEPVEAEIVEPEALLSDAELEDLFRSDPSLASDPLRLYLRDIAEAPLLTPEEEVE 90 Query: 119 IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLI 162 +AKRI++G + + ++ R L DLI Sbjct: 91 LAKRIKEGDTEALQRFVRS--NLRLVVSIAKRYVGRGLSLLDLI 132 >UniRef50_UPI0001C317B8 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C317B8 Length = 367 Score = 296 bits (758), Expect = 2e-78, Method: Composition-based stats. Identities = 131/342 (38%), Positives = 203/342 (59%), Gaps = 5/342 (1%) Query: 270 VNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEK 329 + + + E + L + + + S+ A + Sbjct: 27 YAEIARAVSELDLDESDVEDLHGFLERAEIELVEEIDPATTASNQVERAPDRRRGRRART 86 Query: 330 LHDVSEEV--HRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLV 387 D+ ++ L+ I + LT ++ D+ E AK++MVE+NLRLV Sbjct: 87 ALDLKPDMTTDSLQLFLKDIGKVRLLTAQEEVDLA---KRIERGDLDAKQKMVESNLRLV 143 Query: 388 ISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA 447 +SIAK Y N+GL FLDLIQEG +GL++A +KF+YR+G+KFSTYATWWIRQAI R++AD+A Sbjct: 144 VSIAKNYRNQGLPFLDLIQEGTLGLVRAAEKFDYRKGFKFSTYATWWIRQAIARALADKA 203 Query: 448 RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISM 507 RTIRIPVH++E +NK+ R R+++ E+GREPT EE+A+ + +++ + + A+ P+S+ Sbjct: 204 RTIRIPVHVVEKLNKIGRAERKLVTELGREPTAEEIADVTGIDPEEVDSIKRSAQAPVSL 263 Query: 508 ETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDM 567 E P+GD+E+S G FI D E P + A + A + L L+ RE +VL +R+G+ Sbjct: 264 EKPVGDEEESEFGQFIADERAESPYERAAEILTKEALREALENLSYRERRVLELRYGLGG 323 Query: 568 NTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRS 609 TL+EVG+ F+VTRERIRQIE ++L+KL+ + ++ LR Sbjct: 324 EHPRTLDEVGRTFNVTRERIRQIENQSLKKLQSLAEAQKLRD 365 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 39/161 (24%), Positives = 75/161 (46%), Gaps = 4/161 (2%) Query: 2 EQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPD 61 E ++K LV RG + G LTYAE+ + E +D +ED+ + I+++EE Sbjct: 5 ELQELEEIKGLVNRGTQLGVLTYAEIARAVSELDLDESDVEDLHGFLERAEIELVEEID- 63 Query: 62 ADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAK 121 + + ++++ + TTD ++++++++G V LLT + E+D+AK Sbjct: 64 -PATTASNQVERAPDRRRGRRARTALDLKPDMTTDSLQLFLKDIGKVRLLTAQEEVDLAK 122 Query: 122 RIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLI 162 RIE G + + E + ++ + DLI Sbjct: 123 RIERGDLDAKQKMVES--NLRLVVSIAKNYRNQGLPFLDLI 161 >UniRef50_D1CF84 RNA polymerase sigma factor n=2 Tax=Bacteria RepID=D1CF84_THET1 Length = 363 Score = 295 bits (756), Expect = 3e-78, Method: Composition-based stats. Identities = 133/341 (39%), Positives = 205/341 (60%), Gaps = 8/341 (2%) Query: 274 RVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDV 333 R + + V E I + + I + T E+L + Sbjct: 29 RDVFELVPEAEDNI-DCFNQVSDALIREGIEVLPEETTEAEAGPEEDLDQ--TLEELEND 85 Query: 334 SEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKK 393 L++I LT ++ ++ +R+ G+ + A + V ANLRLV+SIAK+ Sbjct: 86 GYLTDAVKIYLREIGSVPLLTPKEEVELAKRIEKGDTE---ALQRFVLANLRLVVSIAKR 142 Query: 394 YTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIP 453 Y RGL LDLIQEGNIGLM+AV KF++R+G++FSTYATWWIRQAITR+I D++R IR+P Sbjct: 143 YVGRGLPLLDLIQEGNIGLMRAVQKFDWRKGHRFSTYATWWIRQAITRAIGDKSREIRLP 202 Query: 454 VHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGD 513 H+ E +N++NRI +Q+ Q + REPTPEE+AE+ +++R++L ++P+S++TP+G+ Sbjct: 203 AHINEELNRINRIRQQLSQTVNREPTPEEIAEKAGTSPERVRELLGYLQQPVSLDTPVGE 262 Query: 514 DEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAG-LTAREAKVLRMRFGIDMNTDYT 572 + DS LG+F+ D P + AT E L+ VL LT RE +VL++R+G+ Y+ Sbjct: 263 EADSTLGEFVPDVRA-NPEEEATDEVLKTEMDRVLDEVLTPREKRVLQLRYGLGDGHTYS 321 Query: 573 LEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 LE+VG++ VTRER+RQ+E +AL KLR L ++++ Sbjct: 322 LEKVGRELGVTRERVRQLEKQALEKLRRGPAIRKLAEYMEE 362 Score = 95.5 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 68/159 (42%), Gaps = 12/159 (7%) Query: 4 NPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDAD 63 + +K L+T GK +G++T +V + +PE + D + + GI+V+ E Sbjct: 8 ELEEAIKRLITLGKSKGHVTERDVFELVPEAEDNIDCFNQVSDALIREGIEVLPEETTEA 67 Query: 64 DLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRI 123 + E G TD V++Y+RE+G+V LLT + E+++AKRI Sbjct: 68 EA----------GPEEDLDQTLEELENDGYLTDAVKIYLREIGSVPLLTPKEEVELAKRI 117 Query: 124 EDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLI 162 E G + + ++ R L DLI Sbjct: 118 EKGDTEALQRFVLA--NLRLVVSIAKRYVGRGLPLLDLI 154 >UniRef50_P43344 RNA polymerase sigma factor rpoD (Fragment) n=31 Tax=Bacteria RepID=RPOD_SERMA Length = 215 Score = 295 bits (756), Expect = 3e-78, Method: Composition-based stats. Identities = 211/215 (98%), Positives = 214/215 (99%) Query: 399 LQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIE 458 LQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIE Sbjct: 1 LQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIE 60 Query: 459 TINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSH 518 TINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSH Sbjct: 61 TINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSH 120 Query: 519 LGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGK 578 LGDFIEDTTLELPLDSAT+ESLR+ATHDVLAGLTARE KVLRMRFGIDMNTD+TLEEVGK Sbjct: 121 LGDFIEDTTLELPLDSATSESLRSATHDVLAGLTAREXKVLRMRFGIDMNTDHTLEEVGK 180 Query: 579 QFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 QFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD Sbjct: 181 QFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 215 >UniRef50_D1IHF7 Whole genome shotgun sequence of line PN40024, scaffold_40.assembly12x (Fragment) n=2 Tax=rosids RepID=D1IHF7_VITVI Length = 561 Score = 294 bits (753), Expect = 6e-78, Method: Composition-based stats. Identities = 110/354 (31%), Positives = 186/354 (52%), Gaps = 4/354 (1%) Query: 262 VPKQFDYLVNSMRVMMDRVRTQE---RLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNA 318 + + R V R ++ + + PK G ET Sbjct: 206 STRLLERRSKKRRNPKVAVHENHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAK 265 Query: 319 AIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKE 378 + ++L + EEV + LQ + E E V + + R++++ Sbjct: 266 EESELIVQIQELMRL-EEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQK 324 Query: 379 MVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQA 438 ++ ANLR+V+ IAK+Y RGL DL+QEG++GLM +V+KF+ G +F++YA WWIRQA Sbjct: 325 LIYANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQA 384 Query: 439 ITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVL 498 + ++I +RTIR+P +M + K+ R +QE +PT EE+AER+ + +K++++L Sbjct: 385 VRKAIFQHSRTIRLPENMYSLLGKVKEAKRLFIQEGHHDPTKEEIAERVGITIEKLQRLL 444 Query: 499 KIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKV 558 + P+SM+ P+ D+D+ + DT +E+P S + +R ++L LT +E ++ Sbjct: 445 LHTRMPLSMQQPVWADQDTTFQEVTADTGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRI 504 Query: 559 LRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 +R+RFGI TL E+G F ++ER+RQ+E +AL KL+ S L S+ D Sbjct: 505 IRLRFGIGDGIPRTLSEIGLVFGFSKERVRQLEQRALHKLKQCLSSHGLESYTD 558 >UniRef50_A5JEM2 Chloroplast RNA-polymerase sigma factor (Fragment) n=2 Tax=stramenopiles RepID=A5JEM2_9STRA Length = 404 Score = 294 bits (752), Expect = 8e-78, Method: Composition-based stats. Identities = 108/321 (33%), Positives = 164/321 (51%), Gaps = 12/321 (3%) Query: 300 KNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVK 359 K ++ + + ++ + + L + EE Sbjct: 76 KEYVKDLRTVDMLTAQEEILLTRQIKRGMEIEKALVTLEKTLGRKPTEEEWVN---FVGL 132 Query: 360 DINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF 419 + +A ++K ++ ANLRLV+S AK Y RG+ F DL+QEG GL KA +KF Sbjct: 133 KSIDDIRKNLKRASKSKSAIINANLRLVVSTAKAYQYRGVSFQDLVQEGTCGLHKATEKF 192 Query: 420 EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPT 479 + R+G++FSTYATWWI+Q I R++ DQ+R +R+PVH+ + + + R E REPT Sbjct: 193 DPRKGFRFSTYATWWIKQGIMRAVTDQSRVVRLPVHVHDALFHIRRAKANFWTEHLREPT 252 Query: 480 PEELAERMLMPEDKIRKVLKIAKEPISMETPIG--------DDEDSHLGDFIEDTTLELP 531 ELAE + KI + + S++ +G + + D +D+ P Sbjct: 253 LAELAEATGLTPQKIVFYDTVKDKVSSIDKTVGIGTKTNSMEKSQIAISDMCKDSR-NKP 311 Query: 532 LDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIE 591 ++A ESLR ++ L+ RE V+RMR+G+D TLEE+G F VTRER+RQIE Sbjct: 312 EETAQVESLRQDISRLINTLSPREQDVVRMRYGLDDGEIRTLEEIGSIFSVTRERVRQIE 371 Query: 592 AKALRKLRHPSRSEVLRSFLD 612 A+AL KLR P R+ L+ LD Sbjct: 372 ARALHKLRQPYRNHRLKGQLD 392 >UniRef50_B1VAH4 RNA polymerase sigma factor n=5 Tax=Acholeplasmataceae RepID=B1VAH4_PHYAS Length = 476 Score = 293 bits (750), Expect = 1e-77, Method: Composition-based stats. Identities = 147/468 (31%), Positives = 245/468 (52%), Gaps = 13/468 (2%) Query: 152 EAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDED---EDEEDGDDDSADD 208 + +E + + F N++ + + + +++ ++E D+ Sbjct: 16 QNKEITFQTIRSCFEGQNSDLFYQQIENELKKQGVKVVSSSNQNFLYQNECQPTADTFLK 75 Query: 209 DNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDY 268 D+ + E + + + + EI + S + F + D Sbjct: 76 DDFEGAQELEEISNPNFSSNENEYPIDEKNLLAADFQETEIPEPSNLSNDFIANDSKLDE 135 Query: 269 LVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSE 328 ++ + ++ K + + K +++ + + E Sbjct: 136 DLDLDFDPDLEIDPEDDKFSKENITKINSDIKI-------DDSVRMYLKEIGRIPLLSKE 188 Query: 329 KLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVI 388 + + V + +++ + I+ +++ +A +AK +VE+N RLV+ Sbjct: 189 EEQKKTFAVFLGKEAKKKLTKFRNQEIDLSDQEVKQLESQIIQANQAKDVLVESNYRLVV 248 Query: 389 SIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQAR 448 SIAK+Y RG+ FLDLIQEGN+GLM+AVDKF+Y++G + STYAT+W+ Q +TR+IADQAR Sbjct: 249 SIAKRYIGRGVLFLDLIQEGNMGLMRAVDKFDYQKGLRLSTYATYWVIQGVTRAIADQAR 308 Query: 449 TIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISME 508 TIRIPVH++ETINK++ +R++ QE+ ++PT EELAE+M +P DK+R + I K+PIS+E Sbjct: 309 TIRIPVHIVETINKMSLCTRKLTQELKKKPTIEELAEKMNIPADKLRSIQYIEKKPISLE 368 Query: 509 TPIGD--DEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLA-GLTAREAKVLRMRFGI 565 P + ++++ LGDFI D + P + E + +VL LT RE KVL+MR+G Sbjct: 369 VPPAENKEDETSLGDFISDPNVLSPHEYMMKEVTQKLLDEVLENTLTEREEKVLKMRYGF 428 Query: 566 DMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 YTLEE+G F VTRERIRQIE+KALR+LR P++ L+S + Sbjct: 429 LDGKVYTLEEIGNLFGVTRERIRQIESKALRRLRTPAKQSKLKSLYQN 476 Score = 47.7 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 36/81 (44%) Query: 74 EDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCS 133 + + ++ + + + D VRMY++E+G + LL++E E + G + Sbjct: 148 DPEDDKFSKENITKINSDIKIDDSVRMYLKEIGRIPLLSKEEEQKKTFAVFLGKEAKKKL 207 Query: 134 VAEYPEAITYLLEQYDRVEAE 154 + I ++ ++E++ Sbjct: 208 TKFRNQEIDLSDQEVKQLESQ 228 >UniRef50_B1AIY8 RNA polymerase sigma factor n=15 Tax=Ureaplasma RepID=B1AIY8_UREP2 Length = 448 Score = 293 bits (750), Expect = 1e-77, Method: Composition-based stats. Identities = 145/452 (32%), Positives = 226/452 (50%), Gaps = 27/452 (5%) Query: 176 PTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTI 235 +L Q+ +E + L + + + Sbjct: 7 EPLFVNLEDLKQKVKLSFTEEFSFSYALSELEAGIFESRNLKGADAGDPEEILLNVVLDV 66 Query: 236 KAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQC 295 K RS + KL F L + F +++ + + RV L ++ Sbjct: 67 SKKKRSRNEI--KFNKLQNYFIHMNLREEHFSEIIDVLEAIGIRVPDY-----DLVMQSK 119 Query: 296 KMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTI 355 + ++T + + + V + + L L E + + Sbjct: 120 SKTNTKKKDEYGIDDTLEISTSKIGFSSTTT----EKVDDGIKAYLGVL--GESKMLRSD 173 Query: 356 EQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKA 415 E+ + +S + + K ++ +N+RLV SIAKKY NRGL DLIQEG+ GL+KA Sbjct: 174 EETEYAKMVISDDPSLVKIGKNQLYTSNMRLVTSIAKKYLNRGLDLEDLIQEGSSGLLKA 233 Query: 416 VDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMG 475 +DKF++ +G+KFSTYATWWIRQ+ITR+IADQAR IRIPVHM+ETINKL + R ++QE+G Sbjct: 234 IDKFDHEKGHKFSTYATWWIRQSITRAIADQARQIRIPVHMVETINKLTKAERNLIQELG 293 Query: 476 REPTPEELAERML------------MPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFI 523 R+PT EE+A+ M + K+ ++ K+ +P+S++ IG DE+S DFI Sbjct: 294 RDPTAEEIAQAMNKVSQAKNQKEQLITAQKVVEIKKLNVDPVSLDKQIGHDEESQFSDFI 353 Query: 524 EDTTLELPLDSATTESLRAATHDVLAG-LTAREAKVLRMRFGIDM-NTDYTLEEVGKQFD 581 D + P ++L +++ L E +V++MR+G+ YTLEEVG+ Sbjct: 354 SDDEIISPEKYTEKKALNDQINEMFEKVLNDNEQRVIKMRYGLLPFERPYTLEEVGEYLG 413 Query: 582 VTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 VTRER RQIE+KA+RKL+HPS++ LRSF+ + Sbjct: 414 VTRERARQIESKAIRKLKHPSKTAKLRSFIGE 445 Score = 49.6 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 40/378 (10%), Positives = 114/378 (30%), Gaps = 27/378 (7%) Query: 14 TRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVME-----EAPDADDLMLA 68 + + + + + ++ ++ + + +II ++ +GI+V + ++ + Sbjct: 68 KKKRSRNEIKFNKLQNYFIHMNLREEHFSEIIDVLEAIGIRVPDYDLVMQSKSKTNTKKK 127 Query: 69 ENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGIN 128 + +D E + + + + D ++ Y+ +G ++L + E + AK + Sbjct: 128 DEYGIDDTLEISTSKIGFSSTTTEKVDDGIKAYLGVLGESKMLRSDEETEYAKMVISDDP 187 Query: 129 QVQC--SVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELS 186 + Y + + + L DLI E + Sbjct: 188 SLVKIGKNQLYTSNMRLVTSIAKKYLNRGLDLEDLI-------QEGSSGLLKAIDKFDHE 240 Query: 187 QEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQ 246 + A D + + + R+ I+ GR Sbjct: 241 KGHKFSTYATWWIRQSITRAIADQARQIRIPVHMVETINKLTKAERNLIQELGRDPTA-- 298 Query: 247 EEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLF 306 ++++ + Q + L+ + +V+ ++ + L + + F Sbjct: 299 ---EEIAQAMNKVSQAKNQKEQLITAQKVV--EIKKLNVDPVSLDKQIGHDEESQFSDFI 353 Query: 307 TGNETSDTWFNAAIAMNKP-----WSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDI 361 + +E + + L+D + V + L E L E + + Sbjct: 354 SDDEIISPEKYTEKKALNDQINEMFEKVLNDNEQRVIKMRYGLLPFERPYTL-EEVGEYL 412 Query: 362 NRRMSIGEAKARRAKKEM 379 +A +++ Sbjct: 413 GVTRERARQIESKAIRKL 430 >UniRef50_B9S0J0 RNA polymerase sigma factor rpoD, putative n=1 Tax=Ricinus communis RepID=B9S0J0_RICCO Length = 548 Score = 293 bits (749), Expect = 2e-77, Method: Composition-based stats. Identities = 109/418 (26%), Positives = 204/418 (48%), Gaps = 1/418 (0%) Query: 195 DEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSE 254 + DE + + D + A ++ A L + DT+ + + ++ Sbjct: 129 NTDELMVVEPTNVIDLARKALSASKEAALLAQKCANLDDTVSTGLEPTDLSNFSLEEVKT 188 Query: 255 VFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDT 314 V RL + + V + + + R ++ + + PK G ET Sbjct: 189 VRSTRRLERQSKNRRVTKTKEIFHEPYSSRRAGVQKKINEGFDPKDPLRLFLWGPETKQL 248 Query: 315 WFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARR 374 + + L + E V + + + V M R Sbjct: 249 LTAKEESELIGQVQDLMSL-ENVKEKFKLQFGRDPTLVEWADAVGLSYSVMQSQLHSGNR 307 Query: 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 434 ++++++ ANLR+V+ IAK+Y RGL DL+QEG++GLMK+++KF+ + G +F+TYA WW Sbjct: 308 SREKLINANLRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSIEKFKPQVGCRFATYAYWW 367 Query: 435 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKI 494 IRQ + ++I +RTIR+P ++ T+ K++ R + E PT EELA+R+ + ++ Sbjct: 368 IRQTVRKAIFQHSRTIRLPENVYHTLGKVSEAKRSYIMEGNHNPTKEELAKRIGITTVRL 427 Query: 495 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAR 554 ++L +A+ P+SM+ + D+++ + D +E+P + +R +L L R Sbjct: 428 ERLLYMARMPLSMQQTVWADQETTFQEITADIEVEIPELCVAKQLMRKHVLSLLNILNPR 487 Query: 555 EAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 E K++R+R+GI+ +L E+G F +++ER+RQ+E++AL KL+ S L ++ D Sbjct: 488 ERKIIRLRYGIEDGKKKSLSEIGSVFGLSKERVRQLESRALYKLKQCLASHGLEAYAD 545 >UniRef50_B5Y8E5 RNA polymerase sigma factor n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y8E5_COPPD Length = 360 Score = 293 bits (749), Expect = 2e-77, Method: Composition-based stats. Identities = 140/355 (39%), Positives = 209/355 (58%), Gaps = 5/355 (1%) Query: 260 RLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAA 319 + + L N + L++ + + + L + Sbjct: 7 KAKKDLTEELENLYNKKFGLMEEDVDLLINSLNPEDLDVDEIDMFLEEKGISIIPEEPRI 66 Query: 320 IAMNKPWSEKLHDVSEEVHRALQ-KLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKE 378 N + + L + E+V +Q L + + LT EQ + + E A++E Sbjct: 67 YGENVSYEQGLPEEEEQVRELMQVYLHDVGQYDLLTAEQERILA---QRIEKNDAAAREE 123 Query: 379 MVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQA 438 +++ NLRLVISIAKKYTN+GL F++LIQEGNIGL+KAV+KF++R+GYKFSTYATWWI+QA Sbjct: 124 LIKRNLRLVISIAKKYTNKGLSFMELIQEGNIGLIKAVEKFDWRKGYKFSTYATWWIKQA 183 Query: 439 ITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVL 498 ITR++ADQ+R IR PVHM+E ++ + ++ ++GREPT +ELAE + EDK+ + Sbjct: 184 ITRALADQSRLIRRPVHMVEAYHQFQKKLNELYNQLGREPTVQELAEALGFSEDKVLALK 243 Query: 499 KIAK-EPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAK 557 +++ EP S++ IGD +DS + DF+ DT E R +VL+ L RE + Sbjct: 244 QMSNPEPQSLDATIGDQDDSRVQDFVPDTGEGAADKYFWEEERRRVLEEVLSTLNKRERE 303 Query: 558 VLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 ++ MR+G+ ++TLEEVG F++TRER+RQIE KALRKLRHP+R LR +LD Sbjct: 304 IIEMRYGLVDGVEHTLEEVGASFNITRERVRQIETKALRKLRHPTRIRKLREYLD 358 Score = 58.5 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 22/146 (15%), Positives = 58/146 (39%), Gaps = 2/146 (1%) Query: 17 KEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLAENTADEDA 76 K + LT N + + + + ++ +I +N + V E ++ ++ + Sbjct: 7 KAKKDLTEELENLYNKKFGLMEEDVDLLINSLNPEDLDVDEIDMFLEEKGISIIPEEPRI 66 Query: 77 AEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAE 136 + E + + +++Y+ ++G +LLT E E +A+RIE + + + Sbjct: 67 YGENVSYEQGLPEEEEQVRELMQVYLHDVGQYDLLTAEQERILAQRIEKNDAAAREELIK 126 Query: 137 YPEAITYLLEQYDRVEAEEARLSDLI 162 + ++ + + +LI Sbjct: 127 --RNLRLVISIAKKYTNKGLSFMELI 150 >UniRef50_Q03066 RNA polymerase sigma-C factor n=22 Tax=Cyanobacteria RepID=RPSC_ANASP Length = 416 Score = 293 bits (749), Expect = 2e-77, Method: Composition-based stats. Identities = 131/338 (38%), Positives = 199/338 (58%), Gaps = 7/338 (2%) Query: 281 RTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRA 340 R +E + K+ + G+E + + + + SE H S E A Sbjct: 77 RDEEVSEAQKVQRYLKLRIVLANAVKQGDEVATPYLHLIEVQERLASELGHRPSLERWAA 136 Query: 341 LQKLQQI------EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKY 394 + E E K + +++ ++K+ M++ANLRLV+S+AKKY Sbjct: 137 TAGINLCDLKPILSEGKRRWAEIAKMTVEELEKMQSQGLQSKEHMIKANLRLVVSVAKKY 196 Query: 395 TNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPV 454 NRGL+ LDL+QEG +GL +AV+KF+ +GY+FSTYA WWIRQ ITR+IA +RTIR+PV Sbjct: 197 QNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPV 256 Query: 455 HMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDD 514 H+ E +NK+ + R++ QE GR PT E+LA + M ++R+VL +S+ET +G D Sbjct: 257 HITEKLNKIKKAQRKIAQEKGRTPTLEDLAIELDMTPTQVREVLLRVPRSVSLETKVGKD 316 Query: 515 EDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLE 574 +D+ LG+ +E T P + ESL+ +LA LT+RE V+ MRFG+ Y+L Sbjct: 317 KDTELGELLE-TDGVTPEEMLMRESLQRDLQHLLADLTSRERDVILMRFGLADGHPYSLA 375 Query: 575 EVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 E+G+ D++RER+RQIE+KAL+KLR P R ++R +L+ Sbjct: 376 EIGRALDLSRERVRQIESKALQKLRQPKRRNLIRDYLE 413 Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 8/112 (7%) Query: 50 DMGIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVE 109 D I + + D++ + AAA + S R+TD VR+Y++E+G V Sbjct: 22 DPDIAIDDSDLSVDEIQ--------ELEIAAADPATFGASANRRSTDLVRLYLQEIGRVR 73 Query: 110 LLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDL 161 LL R+ E+ A++++ + + +E +E S+L Sbjct: 74 LLGRDEEVSEAQKVQRYLKLRIVLANAVKQGDEVATPYLHLIEVQERLASEL 125 >UniRef50_Q116K5 RNA polymerase sigma factor n=1 Tax=Trichodesmium erythraeum IMS101 RepID=Q116K5_TRIEI Length = 496 Score = 291 bits (746), Expect = 4e-77, Method: Composition-based stats. Identities = 124/320 (38%), Positives = 182/320 (56%), Gaps = 13/320 (4%) Query: 292 VEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEET 351 ++ +F L E + L + E++ L + E Sbjct: 189 IQLYYKQVNSFARLHPEEEIHLAHQIDGLL-------ALEKIYEKLEEKLNRSPNEIEWA 241 Query: 352 GLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIG 411 ++ R+ G AK +MV ANLRLV S+AK+Y NRGL F DLIQEG IG Sbjct: 242 TEAKMSKWELCDRLEQGRR----AKNQMVTANLRLVTSVAKRYQNRGLDFQDLIQEGVIG 297 Query: 412 LMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQML 471 L++A +KF++ +GYKFSTY WWIRQAITR+I D +R +R+PV++ ETI+++ +I +Q+ Sbjct: 298 LLRATEKFDHTKGYKFSTYGIWWIRQAITRAICDYSRIVRLPVYLYETISQIKKIVKQIS 357 Query: 472 QEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELP 531 E T EE+A RM M +K++ +++ A+E +S++ PI E+ + I+ E P Sbjct: 358 IECS-PLTAEEVATRMEMTTEKLQFIIECAQETLSLDYPINKGENIIYKEMIK-FNGETP 415 Query: 532 LDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIE 591 L+ VL LT RE VL+MRFG+D + TL+E+G F++TRERIRQIE Sbjct: 416 TKYVFENCLQEDVESVLKTLTERERNVLQMRFGLDDGQEKTLKEIGDTFNLTRERIRQIE 475 Query: 592 AKALRKLRHPSRSEVLRSFL 611 AKALRKL P R+ +LR ++ Sbjct: 476 AKALRKLEDPKRNHILREYI 495 >UniRef50_Q0SG50 RNA polymerase sigma factor n=1 Tax=Rhodococcus jostii RHA1 RepID=Q0SG50_RHOSR Length = 520 Score = 291 bits (746), Expect = 4e-77, Method: Composition-based stats. Identities = 117/310 (37%), Positives = 188/310 (60%), Gaps = 2/310 (0%) Query: 303 ITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDIN 362 + + ++ + + + S +++E + L ++E + + Sbjct: 211 VDEYETVDSIRAYSKSIKKRSLLVSGDESELAERIEAGLYAAYLLKEAEDAGEKLSDQRH 270 Query: 363 RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR 422 R + + AK+ +EANLRLV+SIA++Y RGL LDL+QEGN+GL++AV+KF+Y+ Sbjct: 271 RDLHRVCRDGQHAKRRFLEANLRLVVSIARRYQGRGLDLLDLVQEGNLGLIRAVEKFDYK 330 Query: 423 RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEE 482 G+KFSTYATWWIRQAITR++ADQ+R IRIPVHM+E I++L + ++ +E GREPTP E Sbjct: 331 TGFKFSTYATWWIRQAITRALADQSRVIRIPVHMVEQIDQLGKERARLTKETGREPTPSE 390 Query: 483 LAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRA 542 LA + + I + K + +S++ + D+ + DF ED + + A Sbjct: 391 LATALDTTIEHIGDLEKYDQRVLSLD-VLTDNAEHDGLDF-EDDLAVVAEEVAERRRFYE 448 Query: 543 ATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 602 VL+ L+ R+A+V+R+R+G+ + YTL+E+GK + VTRERIRQIE+K L+ ++ S Sbjct: 449 TLESVLSPLSERDAQVIRLRYGLTGSDPYTLDEIGKIYGVTRERIRQIESKLLKAMKEES 508 Query: 603 RSEVLRSFLD 612 +++LR F D Sbjct: 509 VADILRPFYD 518 >UniRef50_B5JCN6 RNA polymerase sigma factor n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JCN6_9BACT Length = 377 Score = 289 bits (740), Expect = 2e-76, Method: Composition-based stats. Identities = 118/343 (34%), Positives = 203/343 (59%), Gaps = 10/343 (2%) Query: 271 NSMRVMMDRVRTQERLIMKLCVE-QCKMPKKNFITLFTGN-----ETSDTWFNAAIAMNK 324 ++++ +++ R + +E ++P + T N E + Sbjct: 6 STIKHSFSKIQQTRRRPKNMSIEALAEIPSNPALNSQTSNLKIFNEDEVSNVTTINFRAP 65 Query: 325 PWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANL 384 +K + + LQ+I LT Q + RR+ GE + A+ M+++NL Sbjct: 66 APQKKEKAELPDRNSIRTYLQEIGRIDLLTPAQEVTLARRIQAGEKE---ARDLMIKSNL 122 Query: 385 RLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIA 444 RLV+ IA Y + GL LDLI EGNIGL+KAV++F+ +G K STYA WWI+Q+I R++A Sbjct: 123 RLVVKIAHDYKDFGLPVLDLISEGNIGLVKAVERFDPDKGGKLSTYAAWWIKQSIKRALA 182 Query: 445 DQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEP 504 +Q++TIR+PVH+++ I+++ +++ + +E+GREPT +ELAE + MP +K+ + ++ P Sbjct: 183 NQSKTIRLPVHLVDKISRMRKMALMLTEELGREPTDQELAEMLEMPVNKVSHLKSVSVRP 242 Query: 505 ISMETPIGDDEDSH-LGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRF 563 S+ P+G+D +S G+ + D P ++ +SLR H+++ GL REA+++R+RF Sbjct: 243 TSLNAPVGEDGNSTEFGEIVGDDNAPTPYENLHEKSLRGDLHEMIDGLEDREAEIIRLRF 302 Query: 564 GIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEV 606 G++ ++ TLEEVG+ FD+TRER+RQ++ AL K+R S+ Sbjct: 303 GLNGDSPLTLEEVGQVFDITRERVRQLQNIALSKMRKIMASKE 345 Score = 52.7 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 39/83 (46%), Gaps = 2/83 (2%) Query: 81 AQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEA 140 A E + +R Y++E+G ++LLT E+ +A+RI+ G + + + + Sbjct: 64 APAPQKKEKAELPDRNSIRTYLQEIGRIDLLTPAQEVTLARRIQAGEKEARDLMIKS--N 121 Query: 141 ITYLLEQYDRVEAEEARLSDLIT 163 + +++ + + DLI+ Sbjct: 122 LRLVVKIAHDYKDFGLPVLDLIS 144 >UniRef50_B7GEJ9 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7GEJ9_PHATR Length = 329 Score = 289 bits (740), Expect = 2e-76, Method: Composition-based stats. Identities = 116/330 (35%), Positives = 189/330 (57%), Gaps = 16/330 (4%) Query: 297 MPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIE 356 +++I +E + + + E++ L + +E T Sbjct: 1 DSIRSYIKTMCNHELLNKNEEIILGREVQVLIQYEATREQLEAELLRPPTYQEW--ATKI 58 Query: 357 QVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV 416 Q + + ++ RAK + E+N+RLV+SIAK+Y +RGL F DL QEG +GL +A Sbjct: 59 QPDMMVPDLKKQIRRSLRAKAALTESNIRLVVSIAKRYQHRGLSFQDLAQEGILGLTRAC 118 Query: 417 DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGR 476 +KF+ RG++FSTYA+WWI+Q+I R+IADQ RTIR+PVH+ + IN L ++ R++ E+GR Sbjct: 119 EKFDPERGFRFSTYASWWIKQSIMRAIADQGRTIRLPVHIHDQINALRKVERELKAELGR 178 Query: 477 EPTPEELAERMLMPEDKIRKVLKIAKEPISMETPI-------------GDDEDSHLGDFI 523 + EE+ E+ + +KI + +++++ +SME + G D LGD + Sbjct: 179 DARLEEITEKSTLTAEKIEFLNRVSQQDVSMEQELRTSKSKGSSAGLGGPDGGLTLGDVM 238 Query: 524 EDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVT 583 D + P + A+ + L+ ++ L +RE V+RMRFG+D TLEE+G++F VT Sbjct: 239 GDPEAQ-PAEEASYQMLKDDISRLICTLNSREQAVIRMRFGLDDGKAKTLEEIGRRFSVT 297 Query: 584 RERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 RERIRQIE++AL KLR P R+ ++ ++ D Sbjct: 298 RERIRQIESRALHKLRQPYRNHAVKCYVKD 327 >UniRef50_Q9KHE4 RNA polymerase sigma factor n=14 Tax=Cyanobacteria RepID=Q9KHE4_ANASP Length = 390 Score = 288 bits (736), Expect = 6e-76, Method: Composition-based stats. Identities = 120/354 (33%), Positives = 195/354 (55%), Gaps = 7/354 (1%) Query: 259 FRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNA 318 P + L + R D + + F Sbjct: 42 IEEEPPITENLDSEERDSGDEMAAARPS--GYNKTEHDDAVGAFFKEMARYPLLKPDEEV 99 Query: 319 AIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKE 378 +A + E++ D+ ++ + + + G K + R+ G AK++ Sbjct: 100 ELARRVRFLEEVRDLQADLQLQIGQHPTKAQVAGQLEITEKQLENRLYQGR----VAKRK 155 Query: 379 MVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQA 438 M+ +NLRLV+SIAK+Y NRG+ FLDLIQEG +GL +A +KF+ +GYKFSTYA WWIRQA Sbjct: 156 MIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQA 215 Query: 439 ITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVL 498 ITR+IA+ ARTIR+P+H++E +NKL + R++ Q+ R P+ E+AE + + ++R++ Sbjct: 216 ITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKFSRNPSEAEMAEALEISVPQLRQLQ 275 Query: 499 KIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVL-AGLTAREAK 557 ++ ++ +S+ +G +ED+ L D +ED P +R +VL LT RE Sbjct: 276 QLRRQALSLNHRVGKEEDTELMDLLEDEDNLSPEAKMNENMMRQEIWEVLGDVLTPREKD 335 Query: 558 VLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 V+ +R+G+ + TLEEVG F+++RER+RQI++KA+RKLR P ++ L+ +L Sbjct: 336 VISLRYGLTTSEPCTLEEVGNMFNLSRERVRQIQSKAMRKLRRPHIAKRLKGWL 389 Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 13/86 (15%), Positives = 34/86 (39%), Gaps = 1/86 (1%) Query: 39 DQIEDIIQMINDMGIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPV 98 + IE +++ + + +E + + + ++E + D V Sbjct: 22 EIIESVVEH-EEHSLDTLELIIEEEPPITENLDSEERDSGDEMAAARPSGYNKTEHDDAV 80 Query: 99 RMYMREMGTVELLTREGEIDIAKRIE 124 + +EM LL + E+++A+R+ Sbjct: 81 GAFFKEMARYPLLKPDEEVELARRVR 106 >UniRef50_Q31QR8 RNA polymerase sigma factor rpoD4 n=59 Tax=Cyanobacteria RepID=RPOD4_SYNE7 Length = 311 Score = 287 bits (734), Expect = 1e-75, Method: Composition-based stats. Identities = 110/287 (38%), Positives = 175/287 (60%), Gaps = 11/287 (3%) Query: 314 TWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKAR 373 + ++ + +E+ ++S +V + L + N + Sbjct: 23 WYLSSIGRIPLLTAEEEVELSRKVQLMM----------ALLENPDAESNSENQAVLQAGQ 72 Query: 374 RAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW 433 RAK +M++ANLRLV+S+AKKY N+GL+ LDLIQEG++GL +AV+KF+ GYKFSTYA W Sbjct: 73 RAKTKMLKANLRLVVSVAKKYQNQGLELLDLIQEGSLGLERAVEKFDPALGYKFSTYAYW 132 Query: 434 WIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDK 493 WIRQ++TR+I + ARTIR+P+H+ E I+++ +++R++ ++ R P+ E+AE + +P Sbjct: 133 WIRQSMTRAIDNHARTIRLPIHVSEKISRIKKMTRELTHQLKRLPSRAEIAEALKLPLQD 192 Query: 494 IRKVLKIAKEPISMETPI-GDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLT 552 + +L + S++ GDD S LGD I D P+D+ LA LT Sbjct: 193 VEMLLSQSTPCTSLDAQARGDDGRSFLGDLIPDPKSLEPMDAMDRHIQHEQISTWLAHLT 252 Query: 553 AREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLR 599 RE +VL++RFG+ +TL E+G++ +V+RERIRQ+EA+AL+KLR Sbjct: 253 EREQQVLQLRFGLHDGEQHTLAEIGRRLNVSRERIRQVEARALQKLR 299 Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 41/304 (13%), Positives = 99/304 (32%), Gaps = 23/304 (7%) Query: 93 RTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVE 152 T+D V Y+ +G + LLT E E++++++++ + ++ AE +L+ R + Sbjct: 16 HTSDHVSWYLSSIGRIPLLTAEEEVELSRKVQLMMALLENPDAESNSENQAVLQAGQRAK 75 Query: 153 AEEAR--LSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDN 210 + + L +++ + GS + ++ + + Sbjct: 76 TKMLKANLRLVVSVAKKYQNQGLELLDLIQEGSLGLERAVEKFDPALGYKFSTYAYWWIR 135 Query: 211 SIDPELAREKFAELRAQYVVTRDT--IKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDY 268 +R V+ IK R + + +E+ + +L + + Sbjct: 136 QSMTRAIDNHARTIRLPIHVSEKISRIKKMTRELTHQLKRLPSRAEIAEALKLPLQDVEM 195 Query: 269 LVNSMR-----VMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMN 323 L++ R + L + + + + +E TW Sbjct: 196 LLSQSTPCTSLDAQARGDDGRSFLGDLIPDPKSLEPMDAMDRHIQHEQISTWL------- 248 Query: 324 KPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEM-VEA 382 L + ++V + L E+ T E + +N RA +++ V + Sbjct: 249 ----AHLTEREQQVLQLRFGLHDGEQHTLA--EIGRRLNVSRERIRQVEARALQKLRVLS 302 Query: 383 NLRL 386 L Sbjct: 303 QQPL 306 >UniRef50_A0LLA1 RNA polymerase sigma factor n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LLA1_SYNFM Length = 433 Score = 286 bits (733), Expect = 1e-75, Method: Composition-based stats. Identities = 133/280 (47%), Positives = 193/280 (68%), Gaps = 1/280 (0%) Query: 333 VSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAK 392 V +++ + + + + + +++ R AK+EMV+ANLRLV+SIAK Sbjct: 155 VRDKILKVIVRTFERGTMDYPGNARYREMLVRSRAIMLAIDSAKQEMVKANLRLVLSIAK 214 Query: 393 KYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRI 452 +Y RG+ F DLIQEGN+GL+KAV +F++ +G +FSTYATWW+RQ+I R I D+ RTIR+ Sbjct: 215 RYRGRGMSFDDLIQEGNLGLLKAVGRFDHTKGNRFSTYATWWVRQSIIRGIYDKTRTIRL 274 Query: 453 PVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIG 512 PVH IE N ++ ++L+E+GREP+P+E+AER +P DK++ VL +A +PIS+ETPIG Sbjct: 275 PVHFIELKNLFFKVFYELLKELGREPSPQEIAERAKLPLDKVQMVLTLAAQPISLETPIG 334 Query: 513 DDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYT 572 +DE LGDFIED P++ + L T +L+ L RE K+LR+RFGID T Sbjct: 335 EDEQR-LGDFIEDERAASPMEECSDRELAEITRSLLSSLQPREEKILRLRFGIDGQPAET 393 Query: 573 LEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 LE++GK F V++ERIRQIE KALRKLR+P+R L++F++ Sbjct: 394 LEKIGKTFKVSKERIRQIEKKALRKLRNPNRQSCLKTFME 433 Score = 48.5 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 50/120 (41%) Query: 33 EDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIG 92 E + DQ+ D ++G++ + + + E A+ + + + Sbjct: 24 EFDLIDDQVLDERLKRANLGLEEDRDMEGPEAEDILEAAAEREEEDEDLLPEGVTAAGED 83 Query: 93 RTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVE 152 D V Y++E+ + LLT+E E ++A+ I +G ++ V E + + +V+ Sbjct: 84 FEEDHVTCYLKEVSSYPLLTQERETELAQVIREGQEELVRMVCECSTEDRLAADLHQKVQ 143 >UniRef50_B0M9H5 RNA polymerase sigma factor n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0M9H5_9FIRM Length = 347 Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats. Identities = 134/305 (43%), Positives = 206/305 (67%), Gaps = 6/305 (1%) Query: 310 ETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGE 369 + + + + A + +E + V E+ L +I L+ +Q + + E Sbjct: 48 DQNIEFSDFTAAGHADTAEAENAVMED--SVKAYLHRIGRIPLLSKDQEERLA---KEIE 102 Query: 370 AKARRAKKEMVEANLRLVISIAKKYT-NRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS 428 A ++ AK +M+ +NLRLV+S+AK+Y G+ LDLIQEGNIGLMKAVDKF+YRRGYKFS Sbjct: 103 AGSQSAKDKMINSNLRLVVSVAKRYAAGSGMALLDLIQEGNIGLMKAVDKFDYRRGYKFS 162 Query: 429 TYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERML 488 TYA WWIRQ++TR+IADQARTIRIPVHM E + K++ +R+ L+E GREP +ELAE M Sbjct: 163 TYAMWWIRQSVTRAIADQARTIRIPVHMKEKMGKVSGAARKFLEENGREPNADELAELME 222 Query: 489 MPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVL 548 + D++ +++++ + +S+++P+G++ED+ L +F+ D ++ +A L +++L Sbjct: 223 ISRDQMDEIMRLYSDTVSLDSPVGEEEDAMLMNFVADESMPEQYQTAEQGILSEQINEIL 282 Query: 549 AGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLR 608 + LT RE +LR+RFG N +TLEEVG+++ VTRERIRQIE KALRKL+ ++ LR Sbjct: 283 SELTEREQTILRLRFGFVENRIWTLEEVGREYHVTRERIRQIEGKALRKLKMKKETKSLR 342 Query: 609 SFLDD 613 ++++D Sbjct: 343 AYIED 347 Score = 75.4 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 40/315 (12%), Positives = 99/315 (31%), Gaps = 53/315 (16%) Query: 6 QSQLKLLV-TRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADD 64 + +++ L+ G+ + EV+ + + + + +I + D I+ + Sbjct: 4 EERIQELIKAAGQNHNVIQLDEVDQVF-DKSLSEQEFDYVIGRLKDQNIEFSDFT----- 57 Query: 65 LMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIE 124 AA + E+E D V+ Y+ +G + LL+++ E +AK IE Sbjct: 58 ---------------AAGHADTAEAENAVMEDSVKAYLHRIGRIPLLSKDQEERLAKEIE 102 Query: 125 DGINQVQCSVAEYPE----------AITYLLEQYDRVEAEEARLSDLITGFV-------- 166 G + + A + D ++ L + F Sbjct: 103 AGSQSAKDKMINSNLRLVVSVAKRYAAGSGMALLDLIQEGNIGLMKAVDKFDYRRGYKFS 162 Query: 167 -----------DPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPE 215 + V + + + E+ + D+ + E Sbjct: 163 TYAMWWIRQSVTRAIADQARTIRIPVHMKEKMGKVSGAARKFLEENGREPNADELAELME 222 Query: 216 LAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRV 275 ++R++ E+ Y T G + +++ + + L + Sbjct: 223 ISRDQMDEIMRLYSDTVSLDSPVGEEEDAM--LMNFVADESMPEQYQTAEQGILSEQINE 280 Query: 276 MMDRVRTQERLIMKL 290 ++ + +E+ I++L Sbjct: 281 ILSELTEREQTILRL 295 >UniRef50_A9BJC9 RNA polymerase sigma factor n=3 Tax=Thermotogaceae RepID=A9BJC9_PETMO Length = 424 Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats. Identities = 132/307 (42%), Positives = 195/307 (63%), Gaps = 8/307 (2%) Query: 311 TSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEA 370 + ++ D L++I + LT + + + RR +G+ Sbjct: 121 KDSEEYEEIFEDFSDVEVEMCDNISLQDPIKIYLKEISKSKLLTPSRERKLARRAQMGDK 180 Query: 371 KARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY 430 + A++E+++ANLRLVISIAK+Y GL FLDLIQEGNIGLMKAV KF++++GYKFSTY Sbjct: 181 R---AREELIKANLRLVISIAKRYVGHGLGFLDLIQEGNIGLMKAVAKFDWKKGYKFSTY 237 Query: 431 ATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMP 490 + WWIRQAITR+IADQ RT+RIPVH++ETIN++NR+ + +QE G P EEL+ M P Sbjct: 238 SYWWIRQAITRAIADQGRTVRIPVHLVETINRMNRVVNKYIQENGEVPDLEELSVLMDKP 297 Query: 491 EDKIRKVLKIAKEPISMETPIGDD----EDSHLGDFIEDTTLELPLDSATTESLRAATHD 546 DK+++VL AK S+ PI +D +S + DFI D+ P + +R Sbjct: 298 VDKMKEVLISAKNIFSLNAPISNDVDAEGESEVLDFI-DSDSPTPDEEGRKMIIRQKMEM 356 Query: 547 VLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEV 606 ++ L+ +EA +L+MR+G TLEEVG+ F+VTRERIRQIE+K++RKL+HP+R ++ Sbjct: 357 IIDTLSPKEAMILKMRYGFVDGKQKTLEEVGEFFNVTRERIRQIESKSIRKLKHPARKKM 416 Query: 607 LRSFLDD 613 + + + + Sbjct: 417 IENIIQE 423 Score = 69.7 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 20/154 (12%), Positives = 59/154 (38%), Gaps = 15/154 (9%) Query: 22 LTYAEVNDHLPE---DIVDSDQIEDIIQMINDMGIQVMEEA----------PDADDLMLA 68 +T+ E+++ +P + + + + I V++ + + + Sbjct: 61 VTFEEIDESIPSQMREDFTLEFLITFYNELKKSNISVVDGSSGNFCEEDEEKELEVNEEF 120 Query: 69 ENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGIN 128 +++ + + + + DP+++Y++E+ +LLT E +A+R + G Sbjct: 121 KDSEEYEEIFEDFSDVEVEMCDNISLQDPIKIYLKEISKSKLLTPSRERKLARRAQMGDK 180 Query: 129 QVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLI 162 + + + + + ++ R DLI Sbjct: 181 RAREELIKA--NLRLVISIAKRYVGHGLGFLDLI 212 >UniRef50_D1C9N7 RNA polymerase sigma factor n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C9N7_SPHTD Length = 359 Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats. Identities = 110/292 (37%), Positives = 175/292 (59%), Gaps = 9/292 (3%) Query: 318 AAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGE-------- 369 +A +++ S+ ++ +V + E E + + +R+ GE Sbjct: 58 SADLIDQATSDAVYRYFRDVGGHQLLTHREEIEYSRAVRAGLEARKRLEAGEDSEELHQI 117 Query: 370 -AKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS 428 +A+ A+++++ NLRLV+SIAKKY GL +DLIQEGNIGLM AV++++ GY+FS Sbjct: 118 IERAKAAREKLIRHNLRLVVSIAKKYRTSGLPLIDLIQEGNIGLMTAVERYDPELGYRFS 177 Query: 429 TYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERML 488 TYAT+WIRQAI R++A+Q+RTIR+PVHM + I+K+ R Q+ Q GR T +ELA+ + Sbjct: 178 TYATFWIRQAIGRAVANQSRTIRVPVHMHDLISKVRRTEAQLEQLHGRPATDQELAQALD 237 Query: 489 MPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVL 548 + ++I + S++ PIG+D +S +GD + D + +D A T ++R L Sbjct: 238 LDVERIEQARSAIPRTSSLDKPIGEDGESTIGDLLPDPASDEVVDQAVTSAIRDQIRRSL 297 Query: 549 AGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 600 L+ RE VL +RFG+ TL E+ + + ++RER+RQIE +AL KLR+ Sbjct: 298 ESLSERERGVLTLRFGLGGQQPQTLAEIAEYYGISRERVRQIEKEALAKLRN 349 >UniRef50_B3DXQ3 RNA polymerase sigma factor n=5 Tax=Chlamydiae/Verrucomicrobia group RepID=B3DXQ3_METI4 Length = 287 Score = 286 bits (731), Expect = 2e-75, Method: Composition-based stats. Identities = 114/269 (42%), Positives = 179/269 (66%), Gaps = 4/269 (1%) Query: 339 RALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRG 398 L++I + LT E+ ++ +R+ G+ + A+++M++ANLRLV+ IA Y N G Sbjct: 7 ALKLYLREISQIPLLTKEKEVELAKRIQQGDQE---ARRQMIQANLRLVVKIAHDYANSG 63 Query: 399 LQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIE 458 L DLI EGNIGLMKAVD+F+ +G K STYA WWI+Q+I R++A+Q++TIR+PVH+++ Sbjct: 64 LPLPDLISEGNIGLMKAVDRFDPSKGGKLSTYAAWWIKQSIKRALANQSKTIRLPVHLVD 123 Query: 459 TINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSH 518 I K+ R++ Q+ + +GR+PT EELAE + M K+ ++ IA P S++ +G++ED Sbjct: 124 KIAKMRRVAMQLSEILGRDPTDEELAEELGMSTTKVAELRTIAIRPASLDATVGEEEDGT 183 Query: 519 -LGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVG 577 LG+ ++D + P S ++L+ ++L L RE K+L +RFG++ N TLEE+G Sbjct: 184 ALGELVKDESAASPDQSVLDQNLKNTIMELLPKLDERERKILSLRFGLEGNEQMTLEEIG 243 Query: 578 KQFDVTRERIRQIEAKALRKLRHPSRSEV 606 K+F VTRERIRQ++ ALRK+R + Sbjct: 244 KEFHVTRERIRQLQNIALRKIRKELEKQE 272 Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 2/72 (2%) Query: 92 GRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRV 151 +++Y+RE+ + LLT+E E+++AKRI+ G + + + + + +++ Sbjct: 2 DNNDSALKLYLREISQIPLLTKEKEVELAKRIQQGDQEARRQMIQA--NLRLVVKIAHDY 59 Query: 152 EAEEARLSDLIT 163 L DLI+ Sbjct: 60 ANSGLPLPDLIS 71 >UniRef50_B0RI86 RNA polymerase sigma factor n=2 Tax=Clavibacter michiganensis RepID=B0RI86_CLAMS Length = 347 Score = 285 bits (730), Expect = 3e-75, Method: Composition-based stats. Identities = 126/318 (39%), Positives = 192/318 (60%), Gaps = 7/318 (2%) Query: 295 CKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLT 354 +P+ + +T + + + +E V+ + + + ++ T LT Sbjct: 34 SDLPEPSLVTPGASTDAVKDYLRQIGRVPLLTAELEVSVARRIEVGVLSQEVLDTRTDLT 93 Query: 355 IEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK 414 + ++ G AK+ +V ANLRLV+SIAK+YT RGL FLDLIQEGN+GL++ Sbjct: 94 PAERREYQTLAQDGMR----AKQHLVNANLRLVVSIAKRYTGRGLPFLDLIQEGNMGLVR 149 Query: 415 AVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEM 474 AV+KF+Y+ G+KFSTYA+WWI+Q+ITR +AD +RTIRIPVH +E IN++N + R++ E+ Sbjct: 150 AVEKFDYQAGFKFSTYASWWIKQSITRGMADTSRTIRIPVHTVEHINRINAVQRELGDEL 209 Query: 475 GREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPI---GDDEDSHLGDFIEDTTLELP 531 GR+P+ EE+A P K+R +L A+EP+S++ + G D D+ + D IED + P Sbjct: 210 GRDPSMEEIARESDTPVTKVRYLLDRAQEPMSLQVLVGGSGGDGDTEMADLIEDADVTQP 269 Query: 532 LDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIE 591 +D T + + A ++ GL R+A+V+RMRFG+ +L V +Q VTRER+RQIE Sbjct: 270 IDVVTQQLMAAHVTRLIDGLAERDAEVVRMRFGLAGLEPRSLAFVSQQLGVTRERVRQIE 329 Query: 592 AKALRKLRHPSRSEVLRS 609 K L KLR P +R Sbjct: 330 KKVLAKLRIPELEMYIRG 347 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 1/102 (0%) Query: 58 EAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEI 117 +D + +A A + + G +TD V+ Y+R++G V LLT E E+ Sbjct: 11 AETASDTELDHIESARPVDPYADSDLPEPSLVTPGASTDAVKDYLRQIGRVPLLTAELEV 70 Query: 118 DIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLS 159 +A+RIE G+ Q + + +Y + + R Sbjct: 71 SVARRIEVGVL-SQEVLDTRTDLTPAERREYQTLAQDGMRAK 111 >UniRef50_B7K407 RNA polymerase sigma factor n=27 Tax=Cyanobacteria RepID=B7K407_CYAP8 Length = 328 Score = 285 bits (730), Expect = 3e-75, Method: Composition-based stats. Identities = 113/276 (40%), Positives = 181/276 (65%), Gaps = 3/276 (1%) Query: 336 EVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYT 395 E+ L + Q E + V + + RAK++M+EANLRLV++IAKKY Sbjct: 53 EMKDQLTQAQGTEPSDKEWAKAVNLKEPELKKTIEQGNRAKRKMIEANLRLVVAIAKKYQ 112 Query: 396 NRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVH 455 R ++FLDLIQEG++GL + V+KF+ +GYKFSTYA WWIRQAITR+IA QARTIR+P+H Sbjct: 113 KRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIH 172 Query: 456 MIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDE 515 + E +NK+ + R++ Q++GR TP E+A + + +IR+ L +A++PIS++ +GD++ Sbjct: 173 ITEKLNKIKKTQRELSQKLGRSATPAEIAAVLEIEPSQIRECLSMARQPISLDVRVGDNQ 232 Query: 516 DSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEE 575 D+ L + +ED P T E LR +++ LT ++ VL +RFG++ + +L + Sbjct: 233 DTELSELLEDHEA-SPDQYITQELLRQDLKNLMEELTPQQRSVLILRFGLEDGKELSLAK 291 Query: 576 VGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 +GK+ +++RER+RQ+E +AL +LR R ++ +L Sbjct: 292 IGKKLNISRERVRQLEHQALAQLRR--RRANVKEYL 325 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 35/260 (13%), Positives = 84/260 (32%), Gaps = 7/260 (2%) Query: 94 TTDPVRMYMREMGTVELLTREGEIDIAKRIEDGIN--QVQCSVAEYPEAITYLLEQYDRV 151 + D VR Y+ E+G V LLT E EI K+++ ++ +++ + + E V Sbjct: 16 SADMVRTYLHEIGRVPLLTHEQEIVYGKQVQRMMSLFEMKDQLTQAQGTEPSDKEWAKAV 75 Query: 152 EAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNS 211 +E L I + A V + + + + ++G Sbjct: 76 NLKEPELKKTIEQGNRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEK 135 Query: 212 IDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVN 271 DP + + Y R I A + ++E + + ++ + Sbjct: 136 FDP---TKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQKLG 192 Query: 272 SMRVMMD--RVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEK 329 + V E ++ C+ + P + + +T + + Sbjct: 193 RSATPAEIAAVLEIEPSQIRECLSMARQPISLDVRVGDNQDTELSELLEDHEASPDQYIT 252 Query: 330 LHDVSEEVHRALQKLQQIEE 349 + +++ +++L + Sbjct: 253 QELLRQDLKNLMEELTPQQR 272 >UniRef50_B2IZW2 RNA polymerase sigma factor n=14 Tax=Cyanobacteria RepID=B2IZW2_NOSP7 Length = 332 Score = 285 bits (730), Expect = 3e-75, Method: Composition-based stats. Identities = 115/312 (36%), Positives = 189/312 (60%), Gaps = 12/312 (3%) Query: 309 NETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEE--ETGLTIEQVKDINRRMS 366 +T + + E+ + +++V + + L E+ K+ ++ Sbjct: 22 ADTVRAYLREIGRIPLLTHEQEINFAKQVQKMMALLATKEKLAIQLKRQPTQKEWIENIN 81 Query: 367 IGE-------AKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF 419 IGE + ++AK++M++ANLRLV+SIAKKY L FLDLIQEG++GL + V+KF Sbjct: 82 IGEKSLLQQLHQGQKAKQKMIQANLRLVVSIAKKYQRHNLDFLDLIQEGSLGLERGVEKF 141 Query: 420 EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPT 479 + +GYKFSTY WWIRQAITR+IA+Q RTIR+P+H+ E +NK+ RI R++ Q++GR PT Sbjct: 142 DPTKGYKFSTYGYWWIRQAITRAIAEQGRTIRLPIHITEKLNKIKRIQRELTQKLGRTPT 201 Query: 480 PEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTES 539 ++AE + + +IR L +A++P+S+E +G D+D L D +ED P A + Sbjct: 202 AVDIAEELSLDPKQIRDYLLLARQPVSLELRVGSDKDIELQDMLED-NGLSPELYADHKF 260 Query: 540 LRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLR 599 L+ ++L+ L ++ ++L RFG+ + +L E+G++ ++RER+RQIE +AL LR Sbjct: 261 LQQNIQNLLSKLNPQQRQILTFRFGLTDGNELSLAEIGQRMGISRERVRQIEQQALGSLR 320 Query: 600 HPSRSEVLRSFL 611 + + S+L Sbjct: 321 RH--KDKIHSYL 330 Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 2/78 (2%) Query: 83 VLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGI--NQVQCSVAEYPEA 140 S+ + ++ T D VR Y+RE+G + LLT E EI+ AK+++ + + +A + Sbjct: 10 EESNKKEKLLYTADTVRAYLREIGRIPLLTHEQEINFAKQVQKMMALLATKEKLAIQLKR 69 Query: 141 ITYLLEQYDRVEAEEARL 158 E + + E L Sbjct: 70 QPTQKEWIENINIGEKSL 87 >UniRef50_C1SHQ6 RNA polymerase sigma factor n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SHQ6_9BACT Length = 322 Score = 285 bits (730), Expect = 3e-75, Method: Composition-based stats. Identities = 115/313 (36%), Positives = 178/313 (56%), Gaps = 5/313 (1%) Query: 297 MPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVS-EEVHRALQKLQQIEEETGLTI 355 + K+ + + + + + E ++ S E++ L +I + LT Sbjct: 7 VDKEELLEEEPTDLSEVEEIETKLDTCETEPEPKYEYSSEDLEVFKIYLNEISKYPVLTR 66 Query: 356 EQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKA 415 EQ +++ E +K+ M++ NLRLV+SIAKKY NRG+ +DL++EGNIGL+KA Sbjct: 67 EQEGELS---QGIEKGCNDSKETMIKCNLRLVVSIAKKYINRGMNLVDLVEEGNIGLLKA 123 Query: 416 VDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMG 475 V+KF+Y +G+KFSTYATWWIRQAI R+I +Q R +RIPVHM E I+K+ + ++ Q++G Sbjct: 124 VEKFDYTKGFKFSTYATWWIRQAIERAIINQCRMVRIPVHMSENISKVMKTQNELQQKLG 183 Query: 476 REPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT-LELPLDS 534 REPT EL+ MP ++KV K+ S++ P+G DE S L +FI D P Sbjct: 184 REPTIHELSTACKMPLSTLKKVFDAIKQDTSLDMPVGGDESSTLHEFIADDEKYLDPYLK 243 Query: 535 ATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKA 594 S + L L+ E ++ R+G+ N TLE +G +TRER+RQIE + Sbjct: 244 IENTSKKEIIFKWLTFLSDNEKTIIIRRYGLTGNDPETLESIGNDLGITRERVRQIEKRV 303 Query: 595 LRKLRHPSRSEVL 607 L K+R+ ++ + Sbjct: 304 LSKMRNLLATKKI 316 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 32/306 (10%), Positives = 94/306 (30%), Gaps = 13/306 (4%) Query: 54 QVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDP--VRMYMREMGTVELL 111 +++++ ++ + +E + + D ++Y+ E+ +L Sbjct: 5 EIVDKEELLEEEPTDLSEVEEIETKLDTCETEPEPKYEYSSEDLEVFKIYLNEISKYPVL 64 Query: 112 TREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAE 171 TRE E ++++ IE G N + ++ + + ++ + L DL+ + Sbjct: 65 TREQEGELSQGIEKGCNDSKETMIKC--NLRLVVSIAKKYINRGMNLVDLV----EEGNI 118 Query: 172 EDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVT 231 L ++ + + P E +++ Sbjct: 119 GLLKAVEKFDYTKGFKFSTYATWWIRQAIERAIINQCRMVRIPVHMSENISKVMKTQNEL 178 Query: 232 RDTIKAKGRSHATAQEE---ILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIM 288 + + + H + + L +VF + + + + + Sbjct: 179 QQKLGREPTIHELSTACKMPLSTLKKVFDAIKQDTSLDMPVGGDESSTLHEFIADDEKYL 238 Query: 289 KLCVEQCKMPKKNFITLFTG--NETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQ 346 ++ KK I + ++ T + E L + ++ ++++Q Sbjct: 239 DPYLKIENTSKKEIIFKWLTFLSDNEKTIIIRRYGLTGNDPETLESIGNDLGITRERVRQ 298 Query: 347 IEEETG 352 IE+ Sbjct: 299 IEKRVL 304 >UniRef50_Q7U3K5 RNA polymerase sigma factor n=21 Tax=Cyanobacteria RepID=Q7U3K5_SYNPX Length = 467 Score = 285 bits (729), Expect = 4e-75, Method: Composition-based stats. Identities = 124/381 (32%), Positives = 203/381 (53%), Gaps = 15/381 (3%) Query: 232 RDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLC 291 R T + + R + + + + + L+ + + + + + + Q+R + Sbjct: 96 RRTGETRDRRSRSTTDLLRLYLQDIGRVDLLTNEEEVTLARLVQRREALLQQQRDLATSD 155 Query: 292 VEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI-EEE 350 ++ + A + + H +L +LQQ E Sbjct: 156 AAIGELYR-------------LEELQRREANQHSHWPTKQEWARAAHLSLAELQQRIEAG 202 Query: 351 TGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNI 410 G + R + RRAK M++ANLRLV+++AKKY RG++ LDL+QEG + Sbjct: 203 YGAWAREANLEARELKTALRNGRRAKDHMIQANLRLVVAVAKKYQQRGMELLDLVQEGTL 262 Query: 411 GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQM 470 GL +AV+KF+ RG++FSTYA WWIRQ +TR+IA Q+RTIR+PVH+ E +N++ R +++ Sbjct: 263 GLERAVEKFDPTRGFRFSTYAYWWIRQGMTRAIATQSRTIRLPVHVTEKLNRIKRAQQEI 322 Query: 471 LQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLEL 530 GR + +LA + + ED +R+ L +S++T +G D+D+ LGD IED Sbjct: 323 ATNEGRIASIADLARALKLSEDTVRQTLARVPRSVSLDTRVGRDQDTQLGDLIEDGKA-T 381 Query: 531 PLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQI 590 P + T + L +L LT+REA VLR RFG++ +T TL ++G+ ++RER+RQI Sbjct: 382 PEQTLTHDELHNDLEHLLDELTSREAAVLRRRFGLEDDTPQTLAQIGEALKLSRERVRQI 441 Query: 591 EAKALRKLRHPSRSEVLRSFL 611 E +AL KLR P R +R ++ Sbjct: 442 ETRALLKLRQPQRRSKVRDYI 462 Score = 44.2 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 25/198 (12%), Positives = 55/198 (27%), Gaps = 4/198 (2%) Query: 51 MGIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVEL 110 GIQ D ++ + + + TTD +R+Y++++G V+L Sbjct: 66 EGIQRFCRTDDGCGEPCRQSNCSTPLPRQPRRTGETRDRRSRSTTDLLRLYLQDIGRVDL 125 Query: 111 LTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNA 170 LT E E+ +A+ ++ + + EE + + P Sbjct: 126 LTNEEEVTLARLVQR--REALLQQQRDLATSDA--AIGELYRLEELQRREANQHSHWPTK 181 Query: 171 EEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVV 230 +E + + + E + + V Sbjct: 182 QEWARAAHLSLAELQQRIEAGYGAWAREANLEARELKTALRNGRRAKDHMIQANLRLVVA 241 Query: 231 TRDTIKAKGRSHATAQEE 248 + +G +E Sbjct: 242 VAKKYQQRGMELLDLVQE 259 >UniRef50_B2J5S6 RNA polymerase sigma factor n=13 Tax=Cyanobacteria RepID=B2J5S6_NOSP7 Length = 378 Score = 284 bits (728), Expect = 4e-75, Method: Composition-based stats. Identities = 117/319 (36%), Positives = 188/319 (58%), Gaps = 5/319 (1%) Query: 294 QCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGL 353 + F +A + E++ ++ ++ L + E Sbjct: 63 EHDDAVGAFFKEMARYPLLKADEEVELARRVRFLEEIRELQAALNLKLGQEPTKLEIASE 122 Query: 354 TIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLM 413 K + R+ G AK++M+ +NLRLV+SIAK+Y NRG+ FLDLIQEG +GL Sbjct: 123 LEMTEKQLESRLYQGR----VAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLN 178 Query: 414 KAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQE 473 +A +KF+ +GYKFSTYA WWIRQAITR+IA+ ARTIR+P+H++E +NKL + R++ Q+ Sbjct: 179 RATEKFDPDKGYKFSTYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQK 238 Query: 474 MGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLD 533 + R PT E+AE + + ++R++ ++ ++ +S+ +G +ED+ L D +ED P Sbjct: 239 LCRNPTEGEMAEALDISVQQLRQLQQLRRQALSLNHRVGKEEDTELMDLLEDEDNLSPEA 298 Query: 534 SATTESLRAATHDVL-AGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEA 592 +R +VL LT RE V+ +R+G+ + TLEEVG F+++RER+RQI++ Sbjct: 299 KMNENMMRQEIWEVLGDVLTPREKDVISLRYGLTTSEPCTLEEVGNMFNLSRERVRQIQS 358 Query: 593 KALRKLRHPSRSEVLRSFL 611 KA+RKLR P ++ L+ +L Sbjct: 359 KAMRKLRRPHIAKRLKGWL 377 Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 47/121 (38%), Gaps = 2/121 (1%) Query: 40 QIEDIIQMINDMGIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVR 99 +I + I + + ++ D + ++ EN ++ D V Sbjct: 10 EILENAADIEEPSLDSLDAVADEEPPIVVENLESDERDGDDMAAARPSGYNKTEHDDAVG 69 Query: 100 MYMREMGTVELLTREGEIDIAKRIE--DGINQVQCSVAEYPEAITYLLEQYDRVEAEEAR 157 + +EM LL + E+++A+R+ + I ++Q ++ LE +E E + Sbjct: 70 AFFKEMARYPLLKADEEVELARRVRFLEEIRELQAALNLKLGQEPTKLEIASELEMTEKQ 129 Query: 158 L 158 L Sbjct: 130 L 130 >UniRef50_Q9LD95 Sigma factor-like protein n=3 Tax=Eukaryota RepID=Q9LD95_ARATH Length = 547 Score = 284 bits (728), Expect = 5e-75, Method: Composition-based stats. Identities = 97/278 (34%), Positives = 171/278 (61%) Query: 335 EEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKY 394 E+V L+ E G E + + + + R ++++++ ANLRLV+ IAK+Y Sbjct: 267 EKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANLRLVVHIAKQY 326 Query: 395 TNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPV 454 NRGL F DL+QEG++GLMK+V+KF+ + G +F+TYA WWIRQ+I +SI +RTIR+P Sbjct: 327 QNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPE 386 Query: 455 HMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDD 514 ++ + K++ + +QE P+ EELA + + +K+ K+L + P+SM+ PI D Sbjct: 387 NVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSD 446 Query: 515 EDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLE 574 +D+ + D+ +E P S + +R ++L L+ +E +++++RFGID +L Sbjct: 447 QDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLS 506 Query: 575 EVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 E+G+ + +++ER+RQ+E++AL +L+ S L ++ D Sbjct: 507 EIGEIYGLSKERVRQLESRALYRLKQNMNSHGLHAYAD 544 >UniRef50_C6X620 RNA polymerase sigma factor RpoD n=68 Tax=Bacteria RepID=C6X620_FLAB3 Length = 294 Score = 284 bits (727), Expect = 6e-75, Method: Composition-based stats. Identities = 111/277 (40%), Positives = 184/277 (66%), Gaps = 3/277 (1%) Query: 335 EEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKY 394 E + LQ+I + +T ++ D+ +++ G+ A +++++ANLR V+S++K+Y Sbjct: 19 RETASLDKYLQEIGKVDLITADEEVDLAQKIRAGDR---VALEKLIKANLRFVVSVSKQY 75 Query: 395 TNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPV 454 N+GL DLI EGN+GLMKA +++ RG+KF +YA WWIRQ+I +++A+Q+R +R+P+ Sbjct: 76 QNQGLSLPDLINEGNLGLMKAAKRYDETRGFKFISYAVWWIRQSILQALAEQSRIVRLPL 135 Query: 455 HMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDD 514 + I +INK+N+ + QE R P+PEELAE + M ED I++ +K + +SM+ P+ + Sbjct: 136 NKIGSINKINKAYAHLEQENERPPSPEELAEVLDMSEDDIKESMKNSGRHLSMDAPLVEG 195 Query: 515 EDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLE 574 EDS+L D + P ESL+ L LT REA ++R+ FG++ TLE Sbjct: 196 EDSNLYDVLRSGESPSPDKELMLESLQIEIERALQTLTPREADLVRLYFGLNGKHPMTLE 255 Query: 575 EVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 E+G+ FD+TRER+RQI+ KA+++L+H +RS++L+S+L Sbjct: 256 EIGETFDLTRERVRQIKEKAIKRLKHNTRSKILKSYL 292 Score = 50.0 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 33/267 (12%), Positives = 82/267 (30%), Gaps = 36/267 (13%) Query: 101 YMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSD 160 Y++E+G V+L+T + E+D+A++I G + + + +++ + + + L D Sbjct: 27 YLQEIGKVDLITADEEVDLAQKIRAGDRVALEKLIKA--NLRFVVSVSKQYQNQGLSLPD 84 Query: 161 LIT----GFVDPNAEEDLA-------------------PTATHVGSELSQEDLDDDEDED 197 LI G + D A + ++ Sbjct: 85 LINEGNLGLMKAAKRYDETRGFKFISYAVWWIRQSILQALAEQSRIVRLPLNKIGSINKI 144 Query: 198 EEDGDDDSADDDNSIDPELAREKFA-ELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVF 256 + +++ PE E +++ + + E L +V Sbjct: 145 NKAYAHLEQENERPPSPEELAEVLDMSEDDIKESMKNSGRHLSMDAPLVEGEDSNLYDVL 204 Query: 257 KQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWF 316 + + ++ S++ ER + L + + + F N Sbjct: 205 RSGESPSPDKELMLESLQ------IEIERALQTLTPREADLVRLYF----GLNGKHPMTL 254 Query: 317 NAAIAMNKPWSEKLHDVSEEVHRALQK 343 E++ + E+ + L+ Sbjct: 255 EEIGETFDLTRERVRQIKEKAIKRLKH 281 >UniRef50_C7M2H3 RNA polymerase sigma factor n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M2H3_ACIFD Length = 337 Score = 283 bits (725), Expect = 1e-74, Method: Composition-based stats. Identities = 124/309 (40%), Positives = 179/309 (57%), Gaps = 5/309 (1%) Query: 303 ITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDIN 362 + + + + ++ + RA +Q + Sbjct: 32 RQEREDEDLVRLYLGDIGSHELLTKDDEAELGRRMDRARDAQRQ-----LDAGVKEPARR 86 Query: 363 RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR 422 + + AK+ ++ANLRLV+SIAK+Y GL LDLIQEGN+GL+ AV+KF++R Sbjct: 87 AELEELVRQGEEAKRAFIQANLRLVVSIAKRYQASGLPLLDLIQEGNMGLIHAVEKFDWR 146 Query: 423 RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEE 482 +G+KFSTYATWWIRQAITR IA+ RTIR+PVH ++++++ R Q+ +GR PT E Sbjct: 147 KGFKFSTYATWWIRQAITRGIANTGRTIRLPVHAGDSLSRVQRAQVQLEVRLGRAPTVRE 206 Query: 483 LAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRA 542 LA + +P DK+ + L+ EP+S+ P+ DD D+ LGD +ED+ P D A L + Sbjct: 207 LAAEVDLPYDKLVEALRFRAEPVSLSEPLRDDGDAELGDVVEDSQSATPFDVAAEHLLPS 266 Query: 543 ATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 602 +LA L RE ++LR+R+G+D TLEEVG+ F +TRERIRQIEA+A+ KLRHPS Sbjct: 267 EVSRLLAPLDGREREILRLRYGLDRGEPRTLEEVGEYFHLTRERIRQIEARAMSKLRHPS 326 Query: 603 RSEVLRSFL 611 R L Sbjct: 327 ADIGARDLL 335 >UniRef50_Q9ZTL1 RNA polymerase sigma factor n=1 Tax=Cyanidium caldarium RepID=Q9ZTL1_CYACA Length = 589 Score = 283 bits (725), Expect = 1e-74, Method: Composition-based stats. Identities = 118/287 (41%), Positives = 179/287 (62%), Gaps = 8/287 (2%) Query: 330 LHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVIS 389 L V E++ R + +L + E T V ++ ++ G AK MV ANLRLVI Sbjct: 290 LEAVREDLRRRIGRLPREHEWAMETNMSVSELRGKLIKGRR----AKNRMVAANLRLVIC 345 Query: 390 IAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQART 449 AK++ NRG+ F DL+QEG+IGL++ V+K++ RG++FSTYA+WWIRQ I +++ + ++ Sbjct: 346 FAKRFRNRGVAFQDLVQEGSIGLIRGVEKYDANRGFRFSTYASWWIRQGIHKALLECSKM 405 Query: 450 IRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMET 509 R+PVH+ E I ++ R S +++ +GREPT E+A ++ MPE+K+ +L+ A+ +S+E Sbjct: 406 FRLPVHVNEMIKEIRRCSYELMNILGREPTKLEIAMKVGMPEEKVIFLLQRAQTALSLEM 465 Query: 510 PIGDDEDS----HLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGI 565 P+ + S LGD + T P DSA SLR L+ L RE +V+RMRFG+ Sbjct: 466 PLRGSDSSLESRTLGDVVSSTASPSPEDSAFGTSLRYDLERALSQLDFREREVIRMRFGL 525 Query: 566 DMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 D +L EVG F VTRER+RQIE +ALRKLR P + L+ +++ Sbjct: 526 DDGRTKSLGEVGSLFCVTRERVRQIETRALRKLRDPRCNIFLKEYME 572 >UniRef50_D1J802 RNA polymerase sigma factor n=1 Tax=Mycoplasma hominis ATCC 23114 RepID=D1J802_MYCHP Length = 538 Score = 283 bits (725), Expect = 1e-74, Method: Composition-based stats. Identities = 121/327 (37%), Positives = 203/327 (62%), Gaps = 16/327 (4%) Query: 300 KNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVK 359 N + + + + + + KL + ++ V ++ + + + LT + + Sbjct: 207 NNLLKEYNDEDIKLSEEKVYDQDDIKLTNKLTETNDIVKWYMRWIGKYGK--LLTTNEEQ 264 Query: 360 DINRRMSIGEA-----KARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK 414 + ++M + K ++A+ +V+ NLRLVI+ AK+Y NRGL F+DLI EGN G+MK Sbjct: 265 ALAKKMQEAKEANNYYKYKKARDMLVKRNLRLVINNAKRYKNRGLNFIDLISEGNAGIMK 324 Query: 415 AVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEM 474 AV K++Y +G+KFSTYATWWIRQAITR++ADQART+R+PVHM+ETINK+ +I R++ QE Sbjct: 325 AVSKYDYTKGFKFSTYATWWIRQAITRAVADQARTVRVPVHMVETINKILKIERELQQEN 384 Query: 475 GREPTPEELAERML--MPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPL 532 G PT EE+A++ +K+R + KI +PIS++ IG +E+S DF++D ++ P Sbjct: 385 GYPPTDEEIAKKYGGDFTAEKVRYIRKINIDPISLDKNIGKEENSSFSDFVKDESVISPT 444 Query: 533 DSATTESLRAATHDVLAG-LTAR-EAKVLRMRFGIDM-----NTDYTLEEVGKQFDVTRE 585 A+ E L ++++ L+ + + ++R RFGI+ +TL+E+ K+ +++E Sbjct: 445 SYASHEELSVIINEMIEEGLSDQADRDLIRKRFGINDLKGNKYKPHTLDELSKELGISKE 504 Query: 586 RIRQIEAKALRKLRHPSRSEVLRSFLD 612 ++RQ+E K LRKL+HP + L+ F + Sbjct: 505 KVRQLETKVLRKLKHPQKRRKLKEFFN 531 >UniRef50_Q2JRK5 RNA polymerase sigma factor n=3 Tax=Cyanobacteria RepID=Q2JRK5_SYNJA Length = 361 Score = 283 bits (724), Expect = 1e-74, Method: Composition-based stats. Identities = 127/363 (34%), Positives = 190/363 (52%), Gaps = 17/363 (4%) Query: 249 ILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTG 308 +L +++ + Q + +R E + ++P+ I Sbjct: 15 RQELDDLWLEAE-SASQDPAAEADLEPGASGLRLNEDAVDHYLNTIGRVPR---IDHAEE 70 Query: 309 NETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIG 368 E S + Q Q +E Q+ R Sbjct: 71 IELSRKIQQKLLIDQA-----------RREWRQQWGQDPSDEELAAALQIPVSTLRSR-- 117 Query: 369 EAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS 428 + +A+++++ ANLRLV+S+AKKY NRG+ FLDLIQEGN+GL++A +KF RG++FS Sbjct: 118 IRQGEQAQRKLINANLRLVVSVAKKYLNRGVPFLDLIQEGNMGLIRATEKFNAERGFRFS 177 Query: 429 TYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERML 488 TYA WWIRQ ITR IA+QARTIR+PVHM++ + L R +R++++ GR PT ELAE + Sbjct: 178 TYAHWWIRQGITRCIANQARTIRLPVHMVDKVRLLKRTNRELMKARGRRPTEAELAEALG 237 Query: 489 MPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVL 548 + K+R + + A P+S++ P+G + +S LGD + D E P + +SLR + Sbjct: 238 IKVKKLRMIQQAAALPLSLDVPVGQEGESRLGDLLPDERQEQPFEEILVQSLRQDVRSAM 297 Query: 549 AGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLR 608 L E +VL +R+G+D TL EVG F++TRERIRQIE ALRKLR S L Sbjct: 298 QALKPIERQVLELRYGLDGQRARTLREVGDHFNLTRERIRQIERDALRKLRLGHPSRALA 357 Query: 609 SFL 611 ++ Sbjct: 358 QYI 360 >UniRef50_P18184 RNA polymerase principal sigma factor hrdC n=5 Tax=Actinomycetales RepID=HRDC_STRCO Length = 339 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 104/297 (35%), Positives = 176/297 (59%) Query: 314 TWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKAR 373 + A +E ++ + ++ +++E R + + Sbjct: 41 QYLTQIGATPLLTAEDEVRLATRIEAGVRAREELETADTGEPAPTPRRRRTLEETVHDGQ 100 Query: 374 RAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW 433 AK MV ANLRLV+S+AK++ +RGL LD+IQEGN+GL++AV+KF++ +G+KFSTYATW Sbjct: 101 EAKDHMVRANLRLVVSMAKRHAHRGLPLLDVIQEGNLGLIRAVEKFDHTKGFKFSTYATW 160 Query: 434 WIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDK 493 WIRQAI R +A ART+R+PVH++E + KL ++ R++ + REPT EE+A + DK Sbjct: 161 WIRQAIERGLATHARTVRLPVHVVEQLQKLAKVERKLRAGLDREPTTEEVAAESGIDVDK 220 Query: 494 IRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTA 553 + + ++ ++ +S++TP+ + D+ +GD I DT + + A ++L A + + L Sbjct: 221 VVWLRRVGRDAVSLDTPVDETGDTVVGDLIPDTEVLRAPEVAEFQALAAELREAVGTLAP 280 Query: 554 REAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSF 610 RE+ +L +R+G+ TL++V + +TRER+RQ+E ++L LR P E L + Sbjct: 281 RESLILSLRYGLHDGRPRTLQQVAQHVGLTRERVRQLEKESLAHLRAPENRERLLDW 337 Score = 41.9 bits (97), Expect = 0.068, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 21/41 (51%) Query: 89 SEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQ 129 E D + Y+ ++G LLT E E+ +A RIE G+ Sbjct: 30 PEPDEEPDLLGQYLTQIGATPLLTAEDEVRLATRIEAGVRA 70 >UniRef50_Q601Y8 RNA polymerase sigma factor n=8 Tax=Bacteria RepID=Q601Y8_MYCH2 Length = 676 Score = 282 bits (722), Expect = 2e-74, Method: Composition-based stats. Identities = 133/345 (38%), Positives = 208/345 (60%), Gaps = 12/345 (3%) Query: 275 VMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVS 334 + E + + + K+ + + + T N + + ++ + KL D S Sbjct: 334 NHNEEDDNSELNLGQSVDDSLKIQEIDDLDYITENSPNQYH-KPKVYSDEVYLNKLTDTS 392 Query: 335 EEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKY 394 + + ++ + + + LT E+ +++ ++M I ++A+ +++ NLRLV++ AK+Y Sbjct: 393 DMIKWYMRWIGKYGK--LLTAEEERELAKKMKIKGRIGKKARDTLIKRNLRLVVNSAKRY 450 Query: 395 TNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPV 454 NRGL F+DLI EGN+G++KAV K++Y RG+KFSTYATWWIRQAITR++ADQAR IRIPV Sbjct: 451 KNRGLGFIDLISEGNLGIIKAVAKYDYTRGFKFSTYATWWIRQAITRAVADQARLIRIPV 510 Query: 455 HMIETINKLNRISRQMLQEMGREPTPEELAERML--MPEDKIRKVLKIAKEPISMETPIG 512 HM+ETINK+N++ R++ QE G PT EE++ER+ DKIR + KI +PIS++ IG Sbjct: 511 HMVETINKINKVERELQQEKGLNPTAEEISERLGGEFSPDKIRYIKKINIDPISLDKAIG 570 Query: 513 DDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLA-GLTAREAKVLRMRFGIDMNTD- 570 +EDS DFI+D + P+D A E +++ L E ++ R+G+ N + Sbjct: 571 KEEDSSFSDFIKDENMISPVDYAIREEKAKVLLEMIDSTLDYDERDFIKRRYGVGTNDEG 630 Query: 571 -----YTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSF 610 ++ EE+ VT+ER+RQIEAK L+KLR P R LR F Sbjct: 631 IPYQAHSFEELAAMRRVTKERVRQIEAKILKKLRTPHRRLSLRDF 675 Score = 42.7 bits (99), Expect = 0.043, Method: Composition-based stats. Identities = 23/147 (15%), Positives = 49/147 (33%), Gaps = 21/147 (14%) Query: 38 SDQIEDIIQMINDMGIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGR---- 93 S + + ++D + D + + + D+ L + Sbjct: 316 SQDFDQSLINLDDQNFDINHNEEDDNSELNLGQSVDDSLKIQEIDDLDYITENSPNQYHK 375 Query: 94 ---------------TTDPVRMYMREMGTV-ELLTREGEIDIAKRIE-DGINQVQCSVAE 136 T+D ++ YMR +G +LLT E E ++AK+++ G + Sbjct: 376 PKVYSDEVYLNKLTDTSDMIKWYMRWIGKYGKLLTAEEERELAKKMKIKGRIGKKARDTL 435 Query: 137 YPEAITYLLEQYDRVEAEEARLSDLIT 163 + ++ R + DLI+ Sbjct: 436 IKRNLRLVVNSAKRYKNRGLGFIDLIS 462 >UniRef50_P78022 RNA polymerase sigma factor rpoD n=2 Tax=Mycoplasma RepID=RPOD_MYCPN Length = 499 Score = 282 bits (721), Expect = 3e-74, Method: Composition-based stats. Identities = 139/423 (32%), Positives = 218/423 (51%), Gaps = 16/423 (3%) Query: 198 EEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQ------EEILK 251 +E+ + D P+ A K + + ++K+ + T + E K Sbjct: 68 QENKESDVPKKRRGRKPKHAPLKEKNNLKLFDILEGSLKSHTENDDTNKVISLLVEVWEK 127 Query: 252 LSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNET 311 ++ L K +++ + D + + +E +++ I F N+ Sbjct: 128 KNKKKDNNSLSNKDIVNVLSKFELPDDEIIFVLDELRDKGIELPHDVEEH-IHEFRANQD 186 Query: 312 SDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAK 371 + V + V L L + + + S E Sbjct: 187 LSIIDEDIEELTTKNISNRDKVDDNVRFFLGSL--DSSKMLDFESEQRIAKVLNSTDEES 244 Query: 372 ARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYA 431 + A ++V +NLRLV+SIAKK+ RGL F DLIQEGN+GL+KA+ KF + G KFSTYA Sbjct: 245 RKYAINQLVTSNLRLVVSIAKKHLERGLDFNDLIQEGNLGLLKAISKFNWSLGNKFSTYA 304 Query: 432 TWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERM---- 487 TWWI+QAITR+IADQART+RIPVHM+ETIN+L + R + QE+GREPT EELAE+M Sbjct: 305 TWWIKQAITRAIADQARTVRIPVHMVETINRLAKAERALNQELGREPTAEELAEKMGGQA 364 Query: 488 -LMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHD 546 KI ++ +++ +P+S++ +G DE+S GDF+ DT ++P + + S + Sbjct: 365 EGFTVKKIAEIKRLSLDPVSLDKTVGHDEESQFGDFVRDTDAQMPDEFTESRSNYEKIDE 424 Query: 547 VLAG-LTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRS 604 +L L+ +E ++RMR G+ TL+EV ++ + RE+IRQIE KA+RKLR R+ Sbjct: 425 LLNNCLSEQEELIVRMRIGMPPYNETKTLDEVSQKIKIPREKIRQIETKAIRKLRQAVRN 484 Query: 605 EVL 607 + Sbjct: 485 NHM 487 Score = 55.0 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 22/143 (15%), Positives = 54/143 (37%), Gaps = 3/143 (2%) Query: 22 LTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLAENTADEDAAEAAA 81 L+ ++ + L + + D+I ++ + D GI++ + + A E Sbjct: 137 LSNKDIVNVLSKFELPDDEIIFVLDELRDKGIELPHDVEEHIHEFRANQDLSI-IDEDIE 195 Query: 82 QVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEA- 140 ++ + S + D VR ++ + + ++L E E IAK + + + Sbjct: 196 ELTTKNISNRDKVDDNVRFFLGSLDSSKMLDFESEQRIAKVLNSTDEESRKYAINQLVTS 255 Query: 141 -ITYLLEQYDRVEAEEARLSDLI 162 + ++ + +DLI Sbjct: 256 NLRLVVSIAKKHLERGLDFNDLI 278 >UniRef50_UPI00016C4C50 transcription initiation factor sigma 70 n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4C50 Length = 521 Score = 281 bits (720), Expect = 5e-74, Method: Composition-based stats. Identities = 141/469 (30%), Positives = 226/469 (48%), Gaps = 37/469 (7%) Query: 181 VGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYV----VTRDTIK 236 + E +DE D P L REK L + R Sbjct: 49 EPARGEDEGAAEDEYASGPDDALGLYLRQMGSIPLLNREKELALAKRLEHHRNRFRAAAL 108 Query: 237 AKGRSHATAQEEILKLSE------------VFKQFRLVPKQFD-YLVNSMRVMMDRVRTQ 283 R A+E+ +++ RL Q L + + ++ Sbjct: 109 LCPRLLDRAREKFEQIAAGQTPIDPNIDAYSSADLRLTRAQIHARLATDLPTLGVLLQQD 168 Query: 284 ERLIMKLCVEQCKMPKKNFIT----LFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVH- 338 + ++ + + ++ + + + W+++L+D+++E+ Sbjct: 169 AEVFAAGARDEYRGSRSDWQRDRFLRLAKCRRLVHELSPRTEILERWTDELNDLADELKH 228 Query: 339 ---------------RALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEAN 383 R ++L+ E +T +++ + R + + +KE+ EAN Sbjct: 229 LAIAHAAAASPADRARLGRQLRDAECRACMTADELAALVRVLRKRRLAYQAVRKELAEAN 288 Query: 384 LRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSI 443 LRLV+SIAK Y NRGL F DLIQEGN GLM+AVDK+E+R +KF TYATWW+RQ ITR++ Sbjct: 289 LRLVVSIAKNYRNRGLPFSDLIQEGNRGLMRAVDKYEWRLEFKFGTYATWWVRQGITRAL 348 Query: 444 ADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKE 503 D ART+R+P H I ++++ ++ ++ GREPT EELAE + + ++ R + + + Sbjct: 349 HDNARTVRVPCHQISLLSRMEKLRGELTVATGREPTSEELAEALGVKPEEARSLRIVGRH 408 Query: 504 PISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRF 563 P+S+ +G D + L DF+ DT + P + L+ +VL L RE +V+ +RF Sbjct: 409 PVSLNDSVGGDGERALEDFLSDTHISPPGEHVDANLLKERIGEVLKSLAPREREVIELRF 468 Query: 564 GIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 G+ T TL+EV KQ+ +TRERIRQIEA+ L KLR P+RS L F D Sbjct: 469 GLKDGTPKTLDEVAKQYGITRERIRQIEARGLLKLRQPTRSCRLEEFAD 517 >UniRef50_D1CD77 RNA polymerase sigma factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CD77_THET1 Length = 596 Score = 281 bits (719), Expect = 5e-74, Method: Composition-based stats. Identities = 148/432 (34%), Positives = 234/432 (54%), Gaps = 3/432 (0%) Query: 166 VDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELR 225 D + + + +L + + +D + ++ S + E+ + E Sbjct: 44 NDADYVDLEIEESLQDPEDLEDLEGTNLDDPIRLYLREIGKENLLSQEQEIELARKNERG 103 Query: 226 AQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQER 285 R +++ S T Q + ++++ + + + ++ + + V ER Sbjct: 104 NYLSNIRSSLQGLDPSQFTEQLAVTLITDLESSLQAAKELYTHIFPADSIPDYWVELIER 163 Query: 286 LIMKLCVE-QCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKL 344 ++ L +E + + + A + ++ D+SE++ R + Sbjct: 164 VVQHLGLESRVEQTTEQSDEDSESKGIYSEIDWAIVRLHILQELAPADISEKIVRTSYRP 223 Query: 345 QQI-EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLD 403 + DI +++ A+ A+K ++EANLRLV+SIAKKYT RG+ LD Sbjct: 224 FDFTSDLIKHFGANQADIQDKITKWIAEGDIARKRLIEANLRLVVSIAKKYTGRGITLLD 283 Query: 404 LIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKL 463 LIQEGNIGL+KAV+KF +++GYKFSTYATWWIRQAITR+IADQARTIRIPVHM E INK+ Sbjct: 284 LIQEGNIGLIKAVEKFRHQKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMGEAINKI 343 Query: 464 NRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFI 523 + R++ QE+GREPT +E+A + +P +KIR+V KI++EPIS+E P+G++ED+ LGDFI Sbjct: 344 AQARRRLTQELGREPTEQEIANYLGIPVEKIREVQKISQEPISLENPVGEEEDTSLGDFI 403 Query: 524 EDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVT 583 +D P+D+A+ LR VL L+ RE VL MRFG+D EV V+ Sbjct: 404 QDHKAPAPMDAASQSLLRDQIDQVLKHLSERERGVLLMRFGLDC-EPRPYREVAHILAVS 462 Query: 584 RERIRQIEAKAL 595 ++ Q E++ L Sbjct: 463 PNQVMQAESRVL 474 Score = 88.9 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 17/154 (11%) Query: 474 MGREPTP-EELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIE--DTTLEL 530 + EP P E+A + + +++ + + ++ + ++ L D D + Sbjct: 445 LDCEPRPYREVAHILAVSPNQVMQAESRVLDMVA--ARLSPEDYQMLLDRFGHLDRSPMS 502 Query: 531 PLD------------SATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGK 578 + LR A V+ + A E ++R RFG+D+ TLEEVG+ Sbjct: 503 EESFRLKYKLTQTQLREIDQKLREALASVMLHVPAPERDMMRFRFGLDIGQPRTLEEVGR 562 Query: 579 QFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 F VTRERIRQIE+KALRKLR L L Sbjct: 563 AFGVTRERIRQIESKALRKLRRDVFRRQLEDLLS 596 Score = 76.6 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 35/229 (15%), Positives = 80/229 (34%), Gaps = 5/229 (2%) Query: 27 VNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSS 86 ++ + SDQ +I + +++ + + D + E+ Sbjct: 4 ISGSINSKPTPSDQEGEIYKYVSNRRDTSYRAGMRMKNQENDADYVDLEIEESLQDPEDL 63 Query: 87 VESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGI-----NQVQCSVAEYPEAI 141 + E DP+R+Y+RE+G LL++E EI++A++ E G + Sbjct: 64 EDLEGTNLDDPIRLYLREIGKENLLSQEQEIELARKNERGNYLSNIRSSLQGLDPSQFTE 123 Query: 142 TYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDG 201 + +E+ +L T ++ D + + ++ ++ D Sbjct: 124 QLAVTLITDLESSLQAAKELYTHIFPADSIPDYWVELIERVVQHLGLESRVEQTTEQSDE 183 Query: 202 DDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEIL 250 D +S + ID + R + A ++ ++ R + I Sbjct: 184 DSESKGIYSEIDWAIVRLHILQELAPADISEKIVRTSYRPFDFTSDLIK 232 >UniRef50_B3PMH4 RNA polymerase sigma-70 factor n=1 Tax=Mycoplasma arthritidis 158L3-1 RepID=B3PMH4_MYCA5 Length = 513 Score = 281 bits (719), Expect = 6e-74, Method: Composition-based stats. Identities = 140/482 (29%), Positives = 256/482 (53%), Gaps = 45/482 (9%) Query: 147 QYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSA 206 ++++ + SD+ G D E D + + + D +DE +D Sbjct: 57 LFEKLLEQGVLSSDIDFGDDDEINETDFFESLANDKKSKKTKKTKTDALDDELHEEDIED 116 Query: 207 DDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQF 266 + D E + +L + + D + + + ++ + + + +L Sbjct: 117 LEPTLEDLEEDEDFKEDLDDEKDLEEDIDENEEFGIESEADDSSPQYDNYTE-KLSDDFD 175 Query: 267 DYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPW 326 + ++ T E + +E + +++ + Sbjct: 176 EDEDIEAENLLKEYDTYE-----IKLEDQHISREDNM----------------------L 208 Query: 327 SEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEA-----KARRAKKEMVE 381 S KL + ++ V ++ + + + LT ++ +++ +M A + +RA+ +V+ Sbjct: 209 SNKLTETNDIVKWYMRWIGKYGK--LLTPKKERELAIKMEEALANNNYYRYKRARDMLVK 266 Query: 382 ANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITR 441 NLRLVI+ AK+Y NRGL F+DLI EGN G+MKAV K++Y++G+KFSTYATWWIRQAITR Sbjct: 267 RNLRLVINNAKRYKNRGLSFIDLISEGNSGIMKAVSKYDYKKGFKFSTYATWWIRQAITR 326 Query: 442 SIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERML--MPEDKIRKVLK 499 ++ADQARTIR+PVHM+ETINK+ +I R++ QE G PT EE+A++ +K+R + K Sbjct: 327 AVADQARTIRVPVHMVETINKILKIERELQQEFGYPPTDEEIAKKFGGDFTAEKVRYIRK 386 Query: 500 IAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVL-AGLTAREAKV 558 I +PIS++ IG +E+S DF++D ++ P D A+ + L ++++ + L + + Sbjct: 387 INIDPISLDKNIGKEENSSFSDFVKDESVISPNDFASQQELAVILNEMINSSLDPEDQAL 446 Query: 559 LRMRFGIDM------NTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRS-FL 611 +R R+G+ +TL+E+ K+ ++++E++R++EAK LRKL+HP + + L+ +L Sbjct: 447 IRKRYGVGQDPSGVPYRPHTLDELAKELNISKEKVRKLEAKILRKLKHPQKRKKLKEFYL 506 Query: 612 DD 613 +D Sbjct: 507 ND 508 >UniRef50_A8ZNW0 RNA polymerase sigma factor n=1 Tax=Acaryochloris marina MBIC11017 RepID=A8ZNW0_ACAM1 Length = 299 Score = 280 bits (716), Expect = 1e-73, Method: Composition-based stats. Identities = 101/266 (37%), Positives = 162/266 (60%), Gaps = 5/266 (1%) Query: 348 EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 407 ++ + + + +RAK M+ NLRLV++IAKKY RG+ +DLIQE Sbjct: 35 QQIQSALNPPQGISQAELDQIQKRGKRAKHRMICGNLRLVVTIAKKYQKRGMDLIDLIQE 94 Query: 408 GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 467 G++GL +AV+KF+ +GY+FSTYA WWIRQ+ITR+IA Q+ TIRIPVHM E +N++ R+ Sbjct: 95 GSLGLERAVEKFDPAKGYRFSTYAYWWIRQSITRAIAMQSHTIRIPVHMTEKLNRIKRVR 154 Query: 468 RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAK--EPISMETPIGDDEDSHLGDFIED 525 R++ Q +GR PT +E+ + + ++++K L+ A+ P S+ +G D++ LGD +ED Sbjct: 155 RELSQTLGRTPTHQEMVAELGITLEQLQKTLQAAQISNPESLNIRVGKDQEMELGDLLED 214 Query: 526 TTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRE 585 + P + + LR A LA L E VL +R+G++ + +L V +Q ++RE Sbjct: 215 LQMPSPNEVVEQDFLRNALWSALAQLNDNERTVLILRYGLEDGRERSLYRVSQQMGISRE 274 Query: 586 RIRQIEAKALRKLRHPSRSEVLRSFL 611 +R++E A KL +S L+ F+ Sbjct: 275 WVRKLEQTAKSKL---LQSGNLQDFM 297 >UniRef50_B1ZU80 RNA polymerase sigma factor n=6 Tax=Verrucomicrobia RepID=B1ZU80_OPITP Length = 353 Score = 280 bits (716), Expect = 1e-73, Method: Composition-based stats. Identities = 112/272 (41%), Positives = 177/272 (65%), Gaps = 4/272 (1%) Query: 336 EVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYT 395 + LQ+I + LTI++ + +R+ G+ A+ M++ANLRLV+ IA Y Sbjct: 47 DRSNLQLYLQEIGKTALLTIDEEISLAKRIRKGDKA---ARDHMIKANLRLVVKIAMDYK 103 Query: 396 NRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVH 455 + GL LDLI EGNIGL+KAV++F+ R+G K STYA WWI+Q+I R++A+Q++TIR+PVH Sbjct: 104 DFGLPLLDLISEGNIGLIKAVERFDPRKGGKLSTYAAWWIKQSIKRALANQSKTIRLPVH 163 Query: 456 MIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDE 515 +++ I+K+ R + + +E+GREPT EELA + +P K+ + ++ P S++ P+G++ Sbjct: 164 LVDKISKMRRTAMALTEELGREPTDEELAIELQIPTSKVAHLKSVSVRPASLDAPVGEEG 223 Query: 516 DS-HLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLE 574 DS G+ + D P + ++L + H ++A L REA+++R+RFG+D + TLE Sbjct: 224 DSATFGEIVGDDNAVSPFEGLREKNLNSDLHAMVASLDEREAEIIRLRFGLDGKDELTLE 283 Query: 575 EVGKQFDVTRERIRQIEAKALRKLRHPSRSEV 606 EVG++F VTRERIRQ+E AL K+R Sbjct: 284 EVGRRFHVTRERIRQLEYLALSKMRKAMAKHE 315 Score = 52.3 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 40/338 (11%), Positives = 106/338 (31%), Gaps = 18/338 (5%) Query: 57 EEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGE 116 +E + A E +V + R+ +++Y++E+G LLT + E Sbjct: 12 DETETYTAPTVELPDAPPSFLEKPDRVADVPVAHGDRSN--LQLYLQEIGKTALLTIDEE 69 Query: 117 IDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAP 176 I +AKRI G + + + + +++ + L DLI+ + Sbjct: 70 ISLAKRIRKGDKAARDHMIKA--NLRLVVKIAMDYKDFGLPLLDLIS----EGNIGLIKA 123 Query: 177 TATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIK 236 + + + + P +K +++R + + + Sbjct: 124 VERFDPRKGGKLSTYAAWWIKQSIKRALANQSKTIRLPVHLVDKISKMRRTAMALTEELG 183 Query: 237 AKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCK 296 + A E + + + V + L + D E + V + Sbjct: 184 REPTDEELAIELQIP-TSKVAHLKSVSVRPASLDAPVGEEGDSATFGEIVGDDNAVSPFE 242 Query: 297 MPKKNFITL------FTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEE 350 ++ + + +E ++ L +V H ++++Q+E Sbjct: 243 GLREKNLNSDLHAMVASLDEREAEIIRLRFGLDGKDELTLEEVGRRFHVTRERIRQLE-- 300 Query: 351 TGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVI 388 L + +++ + +++ V + ++ Sbjct: 301 -YLALSKMRKAMAKHEAIRTSEEIEEEDRVRQRMDVIR 337 >UniRef50_Q03065 RNA polymerase sigma-B factor n=68 Tax=cellular organisms RepID=RPSB_ANASP Length = 332 Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats. Identities = 111/280 (39%), Positives = 180/280 (64%), Gaps = 7/280 (2%) Query: 334 SEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKK 393 EE+ LQ+ ++E + + +++S G+ AK++M++ANLRLV+SIAKK Sbjct: 60 KEELAEKLQREPTLQEWADKMQLKEDVLLQQLSQGQ----IAKQKMIQANLRLVVSIAKK 115 Query: 394 YTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIP 453 Y R L+FLDLIQEG +GL + V+KF+ GYKFSTYA WWIRQ ITR+IA Q+RTIR+P Sbjct: 116 YQKRNLEFLDLIQEGALGLERGVEKFDPTLGYKFSTYAYWWIRQGITRAIAQQSRTIRLP 175 Query: 454 VHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGD 513 +HM + +NK+ + R++ Q++G E+A+ + + +IR+ L++ ++P+S++ IG Sbjct: 176 IHMADKLNKIKCVQRELSQKLGYIAGVTEIAQALNLEPSQIREYLQLVRQPVSLDMRIGF 235 Query: 514 DEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTL 573 ++D+ L D ++D + P A E L H++LA LT ++ +VL +RFG+ + TL Sbjct: 236 EQDTQLQDLLKDDGM-SPERYAERELLYQDIHNLLAKLTPQQKEVLILRFGLAGGCELTL 294 Query: 574 EEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 ++ ++ ++RER+RQ+E +AL LR RS+L D Sbjct: 295 VQISQRMGISRERVRQVEKQALTLLRRYGIDS--RSYLAD 332 Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 41/274 (14%), Positives = 100/274 (36%), Gaps = 7/274 (2%) Query: 84 LSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDG--INQVQCSVAEYPEAI 141 L S +E T D V +Y+ ++G V LL+ E EI A++++ + + +AE + Sbjct: 11 LKSKNNEFSYTADAVSIYLHKIGRVPLLSHEQEIFFAQQVQQMMVMFTAKEELAEKLQRE 70 Query: 142 TYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDG 201 L E D+++ +E L ++ + A V + + + + ++G Sbjct: 71 PTLQEWADKMQLKEDVLLQQLSQGQIAKQKMIQANLRLVVSIAKKYQKRNLEFLDLIQEG 130 Query: 202 DDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRL 261 DP L + Y R I + + +++ + + Sbjct: 131 ALGLERGVEKFDPTLG---YKFSTYAYWWIRQGITRAIAQQSRTIRLPIHMADKLNKIKC 187 Query: 262 VPKQFDYLVNSMRVM--MDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAA 319 V ++ + + + + + E ++ ++ + P + + +T Sbjct: 188 VQRELSQKLGYIAGVTEIAQALNLEPSQIREYLQLVRQPVSLDMRIGFEQDTQLQDLLKD 247 Query: 320 IAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGL 353 M+ + + +++H L KL ++E + Sbjct: 248 DGMSPERYAERELLYQDIHNLLAKLTPQQKEVLI 281 >UniRef50_B8HIZ1 RNA polymerase sigma factor n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HIZ1_ARTCA Length = 951 Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats. Identities = 122/284 (42%), Positives = 164/284 (57%), Gaps = 2/284 (0%) Query: 331 HDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISI 390 H+ ++ A++ E G + + + + R A ++V NLRLV+SI Sbjct: 484 HEEVTDLGMAIEAGLYAEHLLGTARPEGRRAILELESVASAGRDAVLKLVSCNLRLVVSI 543 Query: 391 AKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTI 450 AK++T RG+ FLDLIQEGN GL +AV KF+Y +G+KFSTYATWWIRQAITR IADQ+RTI Sbjct: 544 AKRHTGRGMDFLDLIQEGNAGLYRAVQKFDYTKGFKFSTYATWWIRQAITRGIADQSRTI 603 Query: 451 RIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISME-- 508 R+PVH E + + R LQ GR+ T EE+AE D+I V + P S++ Sbjct: 604 RLPVHFHEQVVSVFIAERNFLQSEGRDGTAEEIAEACGKTVDEINAVRRHRTPPASLDWE 663 Query: 509 TPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMN 568 P G LG+ + D D+A L++A H L L+ REA VL RFG+ Sbjct: 664 VPNGKGGVELLGETLYDPDEPTAYDAAVLAQLQSAVHGALDRLSEREAGVLAYRFGLATG 723 Query: 569 TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 TL+++G + VTRERIRQIEAKA LR P+ + LR F D Sbjct: 724 EQLTLDQIGTIYGVTRERIRQIEAKAFAALREPAAAAQLRDFFD 767 Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 43/129 (33%), Gaps = 2/129 (1%) Query: 35 IVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRT 94 D + +E + + +V E + A + + E Sbjct: 408 ETDVEAVEAFLAY-TEHETKVPEVPEVPQAPAVEPPAAPFVLERDDSDWSEAPVLEGSIG 466 Query: 95 TDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAE 154 D VR+Y+ + + +LLT E D+ IE G+ PE +LE A Sbjct: 467 DD-VRLYLEQASSFDLLTHEEVTDLGMAIEAGLYAEHLLGTARPEGRRAILELESVASAG 525 Query: 155 EARLSDLIT 163 + L++ Sbjct: 526 RDAVLKLVS 534 >UniRef50_B8KI17 RNA polymerase sigma factor n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KI17_9GAMM Length = 367 Score = 279 bits (713), Expect = 2e-73, Method: Composition-based stats. Identities = 100/271 (36%), Positives = 169/271 (62%), Gaps = 3/271 (1%) Query: 337 VHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTN 396 + L +I L+ ++ K R + G+ A+K M+E+NLRLV++IA++Y + Sbjct: 92 LDPTQLYLNEIGFVPLLSADEEKHYARLVQKGDEA---ARKRMIESNLRLVVNIARRYLH 148 Query: 397 RGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHM 456 RG+ LDLI+EGN+GLM+AV+KF+ RG++FSTYATWWIRQ I R I +QARTIR+P+H+ Sbjct: 149 RGMSLLDLIEEGNLGLMRAVEKFDPERGFRFSTYATWWIRQTIERGIMNQARTIRLPIHV 208 Query: 457 IETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDED 516 ++ +N R +R++ Q++ +PT +E+A R ++ +++ + + SM+ P+G + D Sbjct: 209 VKDLNGCLRAARELTQQLDHDPTTQEIASRTHKTATEVSRLMGLNERVSSMDAPLGPNSD 268 Query: 517 SHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEV 576 S + + I D P + + + + L L+ ++ +V+ RFG+ TLEEV Sbjct: 269 SSVAETIADEHGCDPSEQIQDDDVHDSVAHWLDELSEKQREVVVRRFGLLGYDSCTLEEV 328 Query: 577 GKQFDVTRERIRQIEAKALRKLRHPSRSEVL 607 G++ +TRER+RQI+ +AL++LR + L Sbjct: 329 GQEIGLTRERVRQIQVEALKRLRRILERQGL 359 Score = 62.0 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 2/94 (2%) Query: 70 NTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQ 129 ADE + + T DP ++Y+ E+G V LL+ + E A+ ++ G Sbjct: 67 PAADEPVTAQSPFNDTDDHDARQITLDPTQLYLNEIGFVPLLSADEEKHYARLVQKGDEA 126 Query: 130 VQCSVAEYPEAITYLLEQYDRVEAEEARLSDLIT 163 + + E + ++ R L DLI Sbjct: 127 ARKRMIES--NLRLVVNIARRYLHRGMSLLDLIE 158 >UniRef50_A9B1P1 RNA polymerase sigma factor n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B1P1_HERA2 Length = 303 Score = 278 bits (710), Expect = 5e-73, Method: Composition-based stats. Identities = 117/291 (40%), Positives = 169/291 (58%), Gaps = 4/291 (1%) Query: 309 NETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIG 368 ++ + N +E+ +++ VH A Q IE+ Sbjct: 12 DDGLQRYLNEIAETPLLAAEEEQKLTQIVHVARQAQPTPACR----IERCPSCALFEQCV 67 Query: 369 EAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS 428 A +++V ANLRLV+SIAK+Y GL F DLIQEGNIGLM A+++F+ +G +FS Sbjct: 68 TKLKEPAHEQLVRANLRLVVSIAKRYRGFGLPFQDLIQEGNIGLMNAIERFDATKGVRFS 127 Query: 429 TYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERML 488 TYATWWIRQAITRS+A+Q R IR+PVH E + K+ RI ++LQ +GREP+ E++ + Sbjct: 128 TYATWWIRQAITRSLANQGRLIRLPVHRWELLIKVRRIETKLLQALGREPSANEISTALG 187 Query: 489 MPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVL 548 +PE+KI +L IA+ PIS+ TP ++ D LGD + D E L+ T T +L Sbjct: 188 VPEEKICDLLSIAQVPISLATPKNEETDMLLGDSLPDEDWEDELECLLTSIDAQYTRAML 247 Query: 549 AGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLR 599 L+ +E +VL +R+G+ +L EVG TR+RI+QIEA AL+ LR Sbjct: 248 NQLSEQEQEVLTLRYGLKDGKSRSLSEVGAVVGRTRQRIQQIEAGALQVLR 298 >UniRef50_Q39477 RNA polymerase sigma factor (Fragment) n=1 Tax=Cyanidium caldarium RepID=Q39477_CYACA Length = 609 Score = 278 bits (710), Expect = 6e-73, Method: Composition-based stats. Identities = 108/400 (27%), Positives = 186/400 (46%), Gaps = 49/400 (12%) Query: 261 LVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAI 320 + + YL + ++ T+E + L P + + Sbjct: 212 MSMEDIHYLEKQEKEILSMAITKEDAL--LIESIVNRPTTASSKQIKKGSSMGAFLKEIG 269 Query: 321 AMNKPWSEKLHDVSEEVHRA---------LQKLQQIEEETGLTIEQVKDINRRMSIGEAK 371 ++ ++ ++ E+ + L+ E + + + ++ + Sbjct: 270 SVPLLTESQVVSLAREIRKLALWNATRIQLRHEYGKEPDRTEWAKALNMSAEELTRNLLR 329 Query: 372 ARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYA 431 A+RA++ +V ANLRLV+S+AK++TNRGL DLIQEG+IGL+K ++F+YR G++FSTYA Sbjct: 330 AQRARESLVAANLRLVVSVAKQFTNRGLSMQDLIQEGSIGLIKGAERFDYRTGFRFSTYA 389 Query: 432 TWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPE 491 WWIRQA+ R+IAD +R IRIP + + ++ R ++ +GR+PT ELA+ + + Sbjct: 390 MWWIRQAMQRAIADTSRPIRIPSTITDLSVQIYRARLELSSTLGRDPTDAELADFLDISV 449 Query: 492 DKIRKVLKIAKE--PISMETPIGDD----------------------------------- 514 +++ V + +S++ P+ Sbjct: 450 QRLQDVKLYTNQSATVSLDAPVSRQVTNTCIKSKGTGDTDVFSSKADGKLSKNGYGSRHK 509 Query: 515 -EDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTL 573 D LGD ++ P +R L+ L E +V+RMRFG+D ++ Sbjct: 510 LGDFTLGDTVQTDESVSPEHMMADSLMRDDIECALSLLNPYEREVIRMRFGLDDGRMKSV 569 Query: 574 EEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 +EV + V RIR+IEA+ALRKLRHPS +LR ++ + Sbjct: 570 DEVCAYYCVQTSRIRRIEARALRKLRHPSVWHMLRDYISN 609 >UniRef50_A6G031 RNA polymerase sigma factor n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G031_9DELT Length = 431 Score = 278 bits (710), Expect = 6e-73, Method: Composition-based stats. Identities = 116/376 (30%), Positives = 200/376 (53%), Gaps = 12/376 (3%) Query: 244 TAQEEILKLSEVFK-------QFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCK 296 +A+EE+ + +FK + P + + ++ + + + + + Sbjct: 55 SAEEELEAATHIFKLRHAYWTSLLMYPPFSEGVAAYIKDKLPEKESPTKDLRAFRKGAKQ 114 Query: 297 MPKKNFITLFTGNETSDTWFNA---AIAMNKPWSEKLHDVSEEVHRALQK-LQQIEEETG 352 + + E S + ++ L D + R + L Sbjct: 115 LRDRETRAHREVYEASVEALVERLLEADTDNIIADALADEVAAILRGQRHGLDLDVRPPR 174 Query: 353 LTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL 412 + + + K R AK + V+ANLRLV+SIA+++ + + DLIQEGNIGL Sbjct: 175 EGSKPYAEYVANVRRSSRKLRSAKNKFVKANLRLVVSIARRFNHGRMPLQDLIQEGNIGL 234 Query: 413 MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQ 472 MKAVD+F+YR+G++FSTY +WWIR AI+R+IAD+ R +R+PVHMI+ +K+N+ R++ Sbjct: 235 MKAVDRFDYRKGFRFSTYGSWWIRHAISRAIADKGRQVRLPVHMIDAYHKVNKARRELEA 294 Query: 473 EMGREPTPEELAERMLMPEDKIRKV-LKIAKEPISMETPIGDDEDSHLGDFIEDTTLELP 531 ++GREPT EELA+ + KI ++ + PIS++ P+ D + +GDF+ED E P Sbjct: 295 KLGREPTREELAQHTGIALAKIERMGTMLVDNPISLDKPVSDADGRKMGDFLEDENAEDP 354 Query: 532 LDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIE 591 + ++L +++ L EA ++R RFG+ + + TL+E+G Q+ ++RERIRQ++ Sbjct: 355 GEGLEADALNEQVKRLVSKLRPIEADIIRKRFGLIDDEELTLKEIGGQYSLSRERIRQLQ 414 Query: 592 AKALRKLRHPSRSEVL 607 +AL K+R + L Sbjct: 415 EQALGKIRRELKRLEL 430 >UniRef50_D1CDN0 RNA polymerase sigma factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CDN0_THET1 Length = 344 Score = 277 bits (709), Expect = 8e-73, Method: Composition-based stats. Identities = 107/334 (32%), Positives = 184/334 (55%), Gaps = 11/334 (3%) Query: 278 DRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEV 337 + E + + + +M ++ + +E+ +++ + Sbjct: 21 SELEDLEADLSPASLLEEEMDRELIGDSLG------IYLREIGRAQLLTAEEEVALAQAI 74 Query: 338 HRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNR 397 R + E+ + + + + + + A+ +++E NLRLV+SIA++Y Sbjct: 75 ERGQEA-----EQRLQSDDISPEELDDLKKAVEEGKAARHKLIEHNLRLVVSIARRYVGH 129 Query: 398 GLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMI 457 G+ DLI+EGN+GLM+A +KF++RRG++FSTYATWWIRQA+TR +A+ RTIR+PVH+ Sbjct: 130 GMPLADLIEEGNLGLMRAAEKFDWRRGFRFSTYATWWIRQAVTRGLAEGGRTIRLPVHVG 189 Query: 458 ETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDS 517 E + K+ R ++++ E+GREPT +ELAE + ++I + ++ P+S+E P+G+D ++ Sbjct: 190 EALTKIGRETQRLSLELGREPTNQELAEATGLSPERIDEYKNASRLPLSLEAPLGEDGET 249 Query: 518 HLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVG 577 +LG+ +EDT P A L L L R+ ++ MR+G+ TLE G Sbjct: 250 NLGEVLEDTEAANPEHIADHTMLGEDIKRALERLNERQRAIIIMRYGLYGGQPMTLEAAG 309 Query: 578 KQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 ++ VTRER RQIE +AL +LR + L S + Sbjct: 310 RKLGVTRERARQIEQEALNRLRQSDAKQFLASHV 343 Score = 55.0 bits (131), Expect = 8e-06, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 1/104 (0%) Query: 61 DADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA 120 D D ++ ++ ++ A+ + L E + D + +Y+RE+G +LLT E E+ +A Sbjct: 12 DNLDEIILDSELEDLEADLSPASLLEEEMDRELIGDSLGIYLREIGRAQLLTAEEEVALA 71 Query: 121 KRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITG 164 + IE G + + + + L + VE +A LI Sbjct: 72 QAIERG-QEAEQRLQSDDISPEELDDLKKAVEEGKAARHKLIEH 114 >UniRef50_B0N062 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0N062_9BACT Length = 286 Score = 277 bits (708), Expect = 1e-72, Method: Composition-based stats. Identities = 110/270 (40%), Positives = 182/270 (67%), Gaps = 4/270 (1%) Query: 342 QKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQF 401 + LQ+I +E +T+E+ ++ +R+ G+ + A +++ +ANLR V+S+AK+Y N+GL Sbjct: 20 KYLQEIGKEELITVEEEVELAQRIKKGDQE---ALEKLTKANLRFVVSVAKQYQNQGLSL 76 Query: 402 LDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETIN 461 DLI EGN+GL+KA +KF+ RG+KF +YA WWIRQ+I +++A+Q+R +R+P++ + ++N Sbjct: 77 PDLINEGNLGLIKAAEKFDETRGFKFISYAVWWIRQSILQALAEQSRIVRLPLNQVGSLN 136 Query: 462 KLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGD 521 K+N+ + QE R P+PEELA + +P++K+ L++A +S++ P D ED+ L D Sbjct: 137 KINKAFARFEQEHERTPSPEELANELELPKEKVTDTLRVAGRHVSVDAPFADGEDNSLLD 196 Query: 522 FIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFD 581 + + ESL L LT RE +++ FGI + TLEE+G++FD Sbjct: 197 VLVNPDSPNADRGLINESLSTEVDRALETLTERERDIIKYFFGIGCSE-MTLEEIGEKFD 255 Query: 582 VTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 +TRER+RQI+ KA+R+LRH SRS++L+S+L Sbjct: 256 LTRERVRQIKEKAIRRLRHSSRSKLLKSYL 285 Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 35/63 (55%), Gaps = 2/63 (3%) Query: 101 YMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSD 160 Y++E+G EL+T E E+++A+RI+ G + + + + +++ + + + L D Sbjct: 21 YLQEIGKEELITVEEEVELAQRIKKGDQEALEKLTKA--NLRFVVSVAKQYQNQGLSLPD 78 Query: 161 LIT 163 LI Sbjct: 79 LIN 81 >UniRef50_A6DK04 RNA polymerase sigma factor n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DK04_9BACT Length = 404 Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats. Identities = 116/375 (30%), Positives = 192/375 (51%), Gaps = 5/375 (1%) Query: 236 KAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVR---TQERLIMKLCV 292 + + + +E + L+E+ F + ++ L R R T ER Sbjct: 28 EEEVYYSSNFRESRVHLNELLAAFPKLVREL-LLNEGYHDHAGRKRHYFTGERSSDYSVA 86 Query: 293 EQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETG 352 + + + ++ +A + ++ K ++ E+ Sbjct: 87 DVVEYLSNTEEQSEGHDPEENSLIYKVLANKIRDLQFSVAFYTDMSEKF-KQKEFEDCFI 145 Query: 353 LTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL 412 L K + + MVE NLRLVISIA+KY+N FLDLIQEGNIGL Sbjct: 146 LEESLKKPFADGFRKSYYRMENSVNAMVEGNLRLVISIARKYSNSQEGFLDLIQEGNIGL 205 Query: 413 MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQ 472 + AV+K++ GY FSTYATWWIRQA++R+ + RT+++P +++ +NK+ R R++ Q Sbjct: 206 VSAVEKYDASFGYTFSTYATWWIRQAVSRARTELVRTMKLPANIMVKVNKIYRTERELFQ 265 Query: 473 EMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPL 532 + GRE T +E++E + + KIR + ++ ++PIS++T + ++ LGD + + LP Sbjct: 266 KFGREATIDEVSEAVELSPAKIRSLKRMCQQPISLQTTVSEEHTGELGDIVSNDDDVLPD 325 Query: 533 DSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEA 592 + L + +L L RE ++LRMRFG+ +TLE + +F ++RERIRQIE Sbjct: 326 AEVEQKQLHESLVAMLDILNEREQEILRMRFGLADGEYHTLENIANEFGISRERIRQIET 385 Query: 593 KALRKLRHPSRSEVL 607 AL+KLR P+ + L Sbjct: 386 SALKKLRRPTAVKCL 400 >UniRef50_Q60012 RNA polymerase principal sigma factor hrdD n=27 Tax=Actinomycetales RepID=HRDD_STRVF Length = 332 Score = 275 bits (704), Expect = 3e-72, Method: Composition-based stats. Identities = 116/290 (40%), Positives = 178/290 (61%), Gaps = 5/290 (1%) Query: 315 WFNAAIAMNKPWSEKLHDVSEEVHRALQKLQ-QIEEETGLTIEQVKDINRRMSIGEAKAR 373 + + + K ++S+ + + Q EE T +++ + GE Sbjct: 39 YLDEIARTPLLDAAKEVELSQTIEAGVFAQQVLDGEEESRTDATREELQALVDAGER--- 95 Query: 374 RAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW 433 AK + +NLRLV+++A++Y GL LDLIQEGN GL++AV+KF+YR+G+KFSTYATW Sbjct: 96 -AKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATW 154 Query: 434 WIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDK 493 WIRQAITRSIADQ+RTIR+PVH++E + ++ R+ R+ +E GR+P P E+A + ++ Sbjct: 155 WIRQAITRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGRDPEPAEVAAELGSTPER 214 Query: 494 IRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTA 553 + VL A++P+S+ + D ++ GD +EDT+ P S T D++ L Sbjct: 215 VIDVLDWARDPVSLNMAVDDAGETQFGDLLEDTSAVSPEQSVLTLLRSEELDDLIGRLDQ 274 Query: 554 REAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 603 R A +++MR+GID + TL EVGK+ +TRERIRQIE AL +L+ +R Sbjct: 275 RTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELKKLAR 324 >UniRef50_B9M4Z2 RNA polymerase sigma factor n=12 Tax=Desulfuromonadales RepID=B9M4Z2_GEOSF Length = 358 Score = 274 bits (701), Expect = 7e-72, Method: Composition-based stats. Identities = 116/270 (42%), Positives = 179/270 (66%), Gaps = 3/270 (1%) Query: 338 HRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNR 397 L++I++ LT ++ K++ R+ G+ A+ +M+E+NLRLV+ IAK+Y NR Sbjct: 83 DAIKLYLREIQKTKLLTADEEKELAARIDRGDKA---ARDKMIESNLRLVVKIAKRYINR 139 Query: 398 GLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMI 457 GL FLDLI+EGN+GL+KAV++F+ + +FSTYATWWIRQ+I R++ +Q+RTIR+PVH+ Sbjct: 140 GLPFLDLIEEGNMGLIKAVERFKLSKECRFSTYATWWIRQSIERALVNQSRTIRLPVHVS 199 Query: 458 ETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDS 517 + INK+ RI+R++LQ++ REP+ +E+A M + IR+++ + K+ S+E P+G++ D Sbjct: 200 DDINKMLRITRELLQKINREPSIKEVATAMEVNSAYIRRLMVLLKKTYSIERPMGENNDY 259 Query: 518 HLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVG 577 L D IEDT+ P + + L+ E K+L +RFG+D TL+ +G Sbjct: 260 FLIDTIEDTSTVSPAELLEDVNRYEMVSKWFDTLSDNEKKILTLRFGLDDKDPQTLDTIG 319 Query: 578 KQFDVTRERIRQIEAKALRKLRHPSRSEVL 607 + F VTRERIRQIEAK+L KLR + L Sbjct: 320 RSFGVTRERIRQIEAKSLEKLRKIMEATEL 349 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 42/105 (40%), Gaps = 2/105 (1%) Query: 59 APDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID 118 P+ + + +E + + + D +++Y+RE+ +LLT + E + Sbjct: 46 EPEVEPDAVELEQVEEVEEHEEVEEEEIKVAVVEHFDDAIKLYLREIQKTKLLTADEEKE 105 Query: 119 IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLIT 163 +A RI+ G + + E + +++ R DLI Sbjct: 106 LAARIDRGDKAARDKMIES--NLRLVVKIAKRYINRGLPFLDLIE 148 >UniRef50_B3QZV6 RNA polymerase sigma factor n=1 Tax=Candidatus Phytoplasma mali AT RepID=B3QZV6_PHYMT Length = 419 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 138/408 (33%), Positives = 216/408 (52%), Gaps = 16/408 (3%) Query: 221 FAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQ-------FRLVPKQFDYLVNSM 273 L ++ + + ++ + L FK+ + + L +S+ Sbjct: 7 IENLFKKFNIRQKIKNEFFFNYVKKNDINNNLLLNFKKEDDNSLILKYSEDKIKDLSDSL 66 Query: 274 RVMM----DRVRTQERLIMKLCVEQCKMPKKNFITLFTGN----ETSDTWFNAAIAMNKP 325 ++ D V E + L + K + I + + + + Sbjct: 67 DEIILEEEDLVYEDETDTLVLDEFEEKKEEFLNIDKNPIDLKFYDPVKIYLKEIGQIPLL 126 Query: 326 WSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLR 385 E+ + V+ + ++E IE + ++ + +AK +VEAN R Sbjct: 127 TLEEEQEQFRLVYDGREAEAKLESYRKKEIELSEKEISELNDILKISNKAKHRLVEANYR 186 Query: 386 LVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIAD 445 LV+SIAK+Y RGL+FLDLIQEGN GLM+A++KF +G K STYAT+WI Q I R++AD Sbjct: 187 LVVSIAKRYIRRGLEFLDLIQEGNRGLMRAIEKFNIDKGCKLSTYATFWIVQKILRAVAD 246 Query: 446 QARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPI 505 QAR IR+PVH+++ IN ++ ++ ++ REPT EEL+E + + E K+R + I K+PI Sbjct: 247 QARIIRLPVHIVDRINIISMAKSKLRLKLHREPTIEELSEFINISEKKLRIIEIIKKKPI 306 Query: 506 SMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVL-AGLTAREAKVLRMRFG 564 S+E +G+ +DS LG+FI D P D E ++ +++L LT RE K+LRMR+G Sbjct: 307 SLEARVGEKDDSSLGEFISDPDSLSPHDYMLQEIMKNTLNEILEDTLTDREEKILRMRYG 366 Query: 565 IDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 + +TLEEVG F VTRERIRQIEAKA R+LR P+R L++ + Sbjct: 367 LSNGKVHTLEEVGNVFGVTRERIRQIEAKAFRRLRTPARQNKLKTLYN 414 Score = 43.1 bits (100), Expect = 0.031, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 48/117 (41%), Gaps = 3/117 (2%) Query: 37 DSDQIEDIIQMINDMGIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTD 96 D+I+D+ ++++ ++EE + DE + + + D Sbjct: 55 SEDKIKDLSDSLDEI---ILEEEDLVYEDETDTLVLDEFEEKKEEFLNIDKNPIDLKFYD 111 Query: 97 PVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEA 153 PV++Y++E+G + LLT E E + + + DG + + I ++ + Sbjct: 112 PVKIYLKEIGQIPLLTLEEEQEQFRLVYDGREAEAKLESYRKKEIELSEKEISELND 168 >UniRef50_Q1AV06 RNA polymerase sigma factor n=3 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AV06_RUBXD Length = 304 Score = 273 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 111/263 (42%), Positives = 163/263 (61%), Gaps = 4/263 (1%) Query: 343 KLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL 402 L +I LT + +++RR G+ K A+++++E NLRLV+S+AKKY GL F Sbjct: 38 YLDRIGRWRLLTRDGEIELSRRAKKGDRK---ARQKLIEKNLRLVVSVAKKYRGYGLPFE 94 Query: 403 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 462 DLIQEGNIGLMKAV+KF+ RG++FSTYATWWIRQA+ R++AD+ RTIR+PVHM E I K Sbjct: 95 DLIQEGNIGLMKAVEKFDPERGFRFSTYATWWIRQAVQRAVADKGRTIRVPVHMTEKIRK 154 Query: 463 LNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDED-SHLGD 521 ++R ++ E+ REPT EE+A R+ + +R + + S++ P+ +E S LGD Sbjct: 155 VSRTFNELSLELEREPTDEEIARRLEWDVEDVRLTISAMPDATSLDQPVSSEESASELGD 214 Query: 522 FIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFD 581 FIED D+ E + + + L R VL R+G+D TL E+G + Sbjct: 215 FIEDERTSDTPDTVLKELESSQLKEAIERLPERARYVLVRRYGLDDREPATLAELGDELK 274 Query: 582 VTRERIRQIEAKALRKLRHPSRS 604 ++RER+RQ++ +A R L+ R Sbjct: 275 ISRERVRQLQREAERLLKAGIRR 297 Score = 50.0 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 34/289 (11%), Positives = 82/289 (28%), Gaps = 14/289 (4%) Query: 69 ENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGIN 128 E + A + T + + Y+ +G LLTR+GEI++++R + G Sbjct: 6 EVERSAVRSREGAPAEACCSDPEPETPELLAGYLDRIGRWRLLTRDGEIELSRRAKKGDR 65 Query: 129 QVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQE 188 + + + E + + ++ + DLI + + Sbjct: 66 KARQKLIE--KNLRLVVSVAKKYRGYGLPFEDLIQ----EGNIGLMKAVEKFDPERGFRF 119 Query: 189 DLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEE 248 + + P EK ++ + ++ + A+ Sbjct: 120 STYATWWIRQAVQRAVADKGRTIRVPVHMTEKIRKVSRTFNELSLELEREPTDEEIARRL 179 Query: 249 ILKLSEVFKQFRLVPKQF--------DYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKK 300 + +V +P + + + ++ RT + L + K+ Sbjct: 180 EWDVEDVRLTISAMPDATSLDQPVSSEESASELGDFIEDERTSDTPDTVLKELESSQLKE 239 Query: 301 NFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEE 349 L +L D + +++LQ+ E Sbjct: 240 AIERLPERARYVLVRRYGLDDREPATLAELGDELKISRERVRQLQREAE 288 >UniRef50_Q8S9C9 RNA polymerase sigma factor n=1 Tax=Cyanophora paradoxa RepID=Q8S9C9_CYAPA Length = 431 Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats. Identities = 125/321 (38%), Positives = 175/321 (54%), Gaps = 11/321 (3%) Query: 300 KNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVK 359 + ++ +A KL V E + EE Sbjct: 115 RRYLQEIGEISLLKAEDEIELAKRIETFRKLEKVKEHMKWKTGVEPTDEEWARAAALSDA 174 Query: 360 DINRRMSIGEAKARRAKKEMVEANLRLVISIAKKY-TNRG-LQFLDLIQEGNIGLMKAVD 417 + R M A+ +V ANLR V+++AKKY RG + DLIQEGNIGL++AV+ Sbjct: 175 EELRHMVRV---GTLARDRLVRANLRWVVAVAKKYHKQRGTMSMQDLIQEGNIGLIRAVE 231 Query: 418 KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE 477 KF+ R GY+F+TYATWWIRQAITRSI + +R IR+P H E IN++ R + + + +GR+ Sbjct: 232 KFDPRMGYRFTTYATWWIRQAITRSIQNSSREIRLPAHRHEKINRIKRATVALSRSLGRQ 291 Query: 478 PTPEELAERMLMPEDKIRKVLKIAK--EPISMETPIGDDED--SHLGDFIEDTTLELPLD 533 PT E+AE + + ++RK ++ A +S++ PI + ++ + +GDFI E P D Sbjct: 292 PTEAEIAEHVGLDPSRMRKFVESAAAVATVSLDVPINESDNQSATIGDFIRSEN-EGPAD 350 Query: 534 SATTESLRAATHDVLAG-LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEA 592 A E +R + LA L+ RE VLRMRFG+D TL +VG+ VTRER+RQIE Sbjct: 351 RAERELMRESVARTLAKALSEREYMVLRMRFGLDDGEPKTLNQVGETLGVTRERVRQIEM 410 Query: 593 KALRKLRHPSRSEVLRSFLDD 613 KALRKLR P S LR D Sbjct: 411 KALRKLRRPGFSSALRDLSSD 431 Score = 42.3 bits (98), Expect = 0.053, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 29/51 (56%) Query: 74 EDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIE 124 E+ A A + + G + D R Y++E+G + LL E EI++AKRIE Sbjct: 90 EEVAAPVAPPRAPRVARKGLSEDSGRRYLQEIGEISLLKAEDEIELAKRIE 140 >UniRef50_A8RNE4 RNA polymerase sigma factor n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RNE4_9CLOT Length = 298 Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats. Identities = 124/296 (41%), Positives = 177/296 (59%), Gaps = 9/296 (3%) Query: 319 AIAMNKPWSEKLHDVSE-EVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKK 377 K+ +V E E L+Q LT E+ ++ + G + A++ Sbjct: 7 LKQEKTLEKAKVDNVYEIETDSVQWYLKQAGVGPLLTKEEEIELAYLIQEGSDE---ARQ 63 Query: 378 EMVEANLRLVISIAKKYTNR--GLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 435 +M+ +NLRLVI+ AKKY L LDLIQEGN+GL+KAV+K+ G++FSTYA+WWI Sbjct: 64 KMISSNLRLVINQAKKYVTYTQSLTLLDLIQEGNLGLIKAVEKYNPELGFRFSTYASWWI 123 Query: 436 RQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIR 495 +QAITR+I+ + IR+PVH E I K+ R + +++Q+ TPE+L + E KI Sbjct: 124 KQAITRAISVLDKAIRLPVHFCEDIQKVKRATHEIMQQNDI-VTPEKLKDITGFSEGKIE 182 Query: 496 KVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTARE 555 K+L IS+ETP+G++ + LGDF+EDT + A +++ + L RE Sbjct: 183 KILMNMNHTISLETPVGEE--ATLGDFVEDTLTPSIEEQAMENAMQREISRQMECLRPRE 240 Query: 556 AKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 +L +RFG++ +TLEEVGKQ VTRERIRQIE KALRKLRHP+RS LR F+ Sbjct: 241 QTILALRFGLNGQNPHTLEEVGKQMGVTRERIRQIEMKALRKLRHPNRSRYLREFI 296 Score = 45.0 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 4/86 (4%) Query: 79 AAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYP 138 + V++ TD V+ Y+++ G LLT+E EI++A I++G ++ + + Sbjct: 10 EKTLEKAKVDNVYEIETDSVQWYLKQAGVGPLLTKEEEIELAYLIQEGSDEARQKMISS- 68 Query: 139 EAITYLLEQYDRVE--AEEARLSDLI 162 + ++ Q + + L DLI Sbjct: 69 -NLRLVINQAKKYVTYTQSLTLLDLI 93 >UniRef50_B3R1P5 RNA polymerase sigma factor n=78 Tax=Betaproteobacteria RepID=B3R1P5_CUPTR Length = 395 Score = 272 bits (695), Expect = 3e-71, Method: Composition-based stats. Identities = 103/270 (38%), Positives = 160/270 (59%), Gaps = 5/270 (1%) Query: 341 LQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQ 400 L +I + L+ + + G+ A++ M+E NLRLV+SIAK Y NRG+ Sbjct: 124 QHYLNRISIKPLLSAPEELHFSTLAKDGDFA---ARQVMIERNLRLVVSIAKGYLNRGVP 180 Query: 401 FLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI 460 LDLI+EGN+GLM A++KF+ RG++FSTYATWWIRQ+I R+I +QART+R+PVH+I + Sbjct: 181 LLDLIEEGNLGLMHAIEKFDPSRGFRFSTYATWWIRQSIERAIMNQARTVRLPVHVIREL 240 Query: 461 NKLNRISRQMLQ--EMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSH 518 N++ R R + + GR+ + E++A + D+++ VL + + S++TP D S Sbjct: 241 NQVLRAKRHLEKGGTDGRDASLEDIAHLLGKTPDEVQDVLALNEHTTSLDTPFDLDPGSS 300 Query: 519 LGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGK 578 L DF+ D P L LA L+ + V+ RFG++ TLEE+ + Sbjct: 301 LLDFLSDEHNAAPDQEVAHRELEGLMKLWLARLSEKHRYVVERRFGLNHIEPATLEELAE 360 Query: 579 QFDVTRERIRQIEAKALRKLRHPSRSEVLR 608 + +TRER+RQI+ +AL KL+ S+ +R Sbjct: 361 EMGLTRERVRQIQQEALVKLKRHFASQGVR 390 >UniRef50_D0L243 RNA polymerase sigma factor n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L243_HALNC Length = 343 Score = 272 bits (695), Expect = 4e-71, Method: Composition-based stats. Identities = 102/287 (35%), Positives = 167/287 (58%), Gaps = 3/287 (1%) Query: 318 AAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKK 377 + + SE V L+ +E E LT E + ++ A++ Sbjct: 49 PEKNEEELTTTFSASDSESVDPVRLYLRDVETERLLTAE---EEVIYSRRAQSGDESARQ 105 Query: 378 EMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ 437 +M+ NLRLVI IA++Y NRGL LDLI+EGNIGLM+AV+KF+ RG++FSTYATWWIRQ Sbjct: 106 KMIVCNLRLVIKIARRYMNRGLDLLDLIEEGNIGLMRAVEKFDPERGFRFSTYATWWIRQ 165 Query: 438 AITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKV 497 I R + +Q+RT+R+PVH+++ ++ NR +R++ Q E T E++A+ + P +++ K+ Sbjct: 166 TIERGLMNQSRTVRLPVHVVKEVHTFNRAARKIAQNQNAEVTAEQIADHLDRPVNEVLKI 225 Query: 498 LKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAK 557 + + S ++P+ D + L D I D P + + ++A L +++ + Sbjct: 226 MAFNERQSSFDSPLKGDGEFSLLDLIPDQESNQPDELLQDAGVHGFLDQLIAQLESKQRE 285 Query: 558 VLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRS 604 VL R+G+ +TLEEVG VTRER+RQI+ +A+R+L+ ++ Sbjct: 286 VLVRRYGLRGYETHTLEEVGNHLGVTRERVRQIQLEAVRRLKSLAKK 332 Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 46/108 (42%), Gaps = 2/108 (1%) Query: 56 MEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREG 115 ++E + + + + ++ ++ + + DPVR+Y+R++ T LLT E Sbjct: 29 VDEEELLAVDDVELDDDIDSPEKNEEELTTTFSASDSESVDPVRLYLRDVETERLLTAEE 88 Query: 116 EIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLIT 163 E+ ++R + G + + + +++ R L DLI Sbjct: 89 EVIYSRRAQSGDESARQKMIVC--NLRLVIKIARRYMNRGLDLLDLIE 134 >UniRef50_Q2SRY7 RNA polymerase sigma factor n=5 Tax=Mollicutes RepID=Q2SRY7_MYCCT Length = 505 Score = 272 bits (695), Expect = 4e-71, Method: Composition-based stats. Identities = 140/330 (42%), Positives = 191/330 (57%), Gaps = 61/330 (18%) Query: 343 KLQQIEEETGLTIEQVKDINRRMSIGEAKA-RRAKKEMVEANLRLVISIAKKYTNRGLQF 401 +I + LT +Q + + + + + +++E+NL+LVIS+A+K+ NRGL F Sbjct: 174 YFYKIGQAPILTKDQEIMYAKMAVSDDPEDVKEGRNKLIESNLKLVISVARKHLNRGLDF 233 Query: 402 LDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETIN 461 DLI+EGNIGLMKAVDKFEY +G+KFSTYATWWI QAITR+IADQARTIRIPVHM+ETIN Sbjct: 234 ADLIEEGNIGLMKAVDKFEYEKGFKFSTYATWWISQAITRAIADQARTIRIPVHMVETIN 293 Query: 462 KLNRISRQMLQEMGREPTPEELAERM--LMPEDKIRKVLKIAKEPISMETPIGDDEDSHL 519 KL R+ RQ+ QE+GREP EE+A R+ + DK+ ++ K++ EP+S+E P GD++D+H Sbjct: 294 KLARVERQLTQELGREPNAEEIANRVGEGITSDKVIEIKKLSIEPVSLEKPFGDEDDTHF 353 Query: 520 GDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTL------ 573 GDF+ED + P + E L+ V + RE KV+RMR+GI TL Sbjct: 354 GDFVEDKDMVSPSEYTEKEILKEVMDKVFEDMPPREEKVIRMRYGIVPTRLRTLLRLAQE 413 Query: 574 -------------EEV-----------------------------------GKQFDVTRE 585 EE+ GK+ +VTRE Sbjct: 414 CNDTNAKELKQAIEELDIHLDTPIEKVRKFNNEIINNNLAKYDSARTLEEVGKELNVTRE 473 Query: 586 RIRQIEAKALRKLRHPS----RSEVLRSFL 611 RIRQIEAK +RKL+ PS + L+ F Sbjct: 474 RIRQIEAKTIRKLKQPSPNNKSGKTLKEFY 503 >UniRef50_B9ZQZ1 RNA polymerase sigma factor n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZQZ1_9GAMM Length = 359 Score = 271 bits (692), Expect = 7e-71, Method: Composition-based stats. Identities = 112/298 (37%), Positives = 169/298 (56%), Gaps = 3/298 (1%) Query: 312 SDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAK 371 + + + E+ L+ IE LT E+ + R G+ Sbjct: 58 DEKELSPEQDVPVRPRTLRDARPAELDAIQIYLRDIEYRPLLTPEEERKYARLARDGDES 117 Query: 372 ARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYA 431 ++ M+E NLRLV+ IA++Y NRGL LDLI+EGN+GLM AV+KF+ RG++FSTYA Sbjct: 118 G---RRRMIECNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMHAVEKFDPERGFRFSTYA 174 Query: 432 TWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPE 491 TWWIRQ I R++ +Q RTIRIPVH+ + + RI+R + QE+GR+PT EELA+R+ P Sbjct: 175 TWWIRQTIERALMNQGRTIRIPVHVSKELRMHARIARNLTQELGRDPTEEELAQRLGKPV 234 Query: 492 DKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGL 551 I+K+ +++ SM+ P G D + L D + D + P + ++ + L L Sbjct: 235 ADIQKLRAMSEPSTSMDLPPGPDGERSLTDILADVNAQEPSSLLEDQDIQHLVDEWLGEL 294 Query: 552 TAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRS 609 ++ +VL RFG+ TLE+VG + VTRER+RQI+ AL++LR S ++ Sbjct: 295 DYKQREVLVRRFGLHGFERSTLEQVGAEIGVTRERVRQIQMDALKRLRRLLESRGMKG 352 Score = 54.6 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 41/107 (38%), Gaps = 2/107 (1%) Query: 57 EEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGE 116 E + DD+ E+ + + ++ D +++Y+R++ LLT E E Sbjct: 45 ESPEEVDDVPAPEDEKELSPEQDVPVRPRTLRDARPAELDAIQIYLRDIEYRPLLTPEEE 104 Query: 117 IDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLIT 163 A+ DG + + E + +++ R L DLI Sbjct: 105 RKYARLARDGDESGRRRMIEC--NLRLVVKIARRYLNRGLPLLDLIE 149 >UniRef50_Q73P62 RNA polymerase sigma factor n=2 Tax=Treponema RepID=Q73P62_TREDE Length = 286 Score = 271 bits (692), Expect = 8e-71, Method: Composition-based stats. Identities = 98/282 (34%), Positives = 171/282 (60%), Gaps = 4/282 (1%) Query: 331 HDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISI 390 ++ E++ L++I + LT E+ + G+ AK +V +NLR V+++ Sbjct: 7 NNYDAEMNSLATYLKEINQIPLLTAEEEIKYAKLAEKGDED---AKNMLVNSNLRFVVNV 63 Query: 391 AKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTI 450 AKKY N+GL +DLI EGNIGLM A ++F+ +GYKF +YA WWI+Q+I ++I +++R I Sbjct: 64 AKKYQNQGLPLMDLISEGNIGLMNAAERFDVSKGYKFISYAVWWIKQSILKAICEKSRMI 123 Query: 451 RIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETP 510 R+P++ + ++ + +++ E+A + M + ++ A+EPIS++ P Sbjct: 124 RLPLNRANELVQIEKAKKEIDFSGNETKELNEIAGILNMDNSMVHTIMNAAREPISIDAP 183 Query: 511 IGDD-EDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNT 569 + D+ S + DF++D T ++P D A SLR +++L L REA+++R RFG+ Sbjct: 184 VFDEPGSSSVNDFLQDETHQMPEDYAMDMSLRDEVNELLKNLDDREAEIIRYRFGLGGYA 243 Query: 570 DYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 +L+EVG F++T+ERIRQIE KAL++L+ P+ + L ++ Sbjct: 244 PLSLKEVGLIFNLTKERIRQIEKKALQQLKKPAEKQKLAVYV 285 Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 2/67 (2%) Query: 97 PVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEA 156 + Y++E+ + LLT E EI AK E G + + + +++ + + + Sbjct: 15 SLATYLKEINQIPLLTAEEEIKYAKLAEKGDEDAKNMLVNS--NLRFVVNVAKKYQNQGL 72 Query: 157 RLSDLIT 163 L DLI+ Sbjct: 73 PLMDLIS 79 >UniRef50_Q7XXT0 Plastid sigma factor 2A n=13 Tax=Poaceae RepID=Q7XXT0_ORYSJ Length = 564 Score = 271 bits (692), Expect = 8e-71, Method: Composition-based stats. Identities = 101/356 (28%), Positives = 169/356 (47%), Gaps = 15/356 (4%) Query: 270 VNSMRVMMDRVRTQERLIMKLCVEQ-----CKMPKKNFITLFTGNETSDTWFNAAIAMNK 324 V S R R R I + + KK + Sbjct: 204 VKSARQTEGRARRTRAAIKAATIVRTSPKPATSSKKKRSKGASSGTNPLGSLWKMTGRRL 263 Query: 325 PWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAK---------ARRA 375 +++ + SE + L+ E Q + G + Sbjct: 264 LTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDHGIYC 323 Query: 376 KKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 435 K MV +N+RLVISIA+++ G++ DLIQEG GL++ +KF+ +G++FSTY+ WWI Sbjct: 324 KNRMVTSNVRLVISIAREFEGPGMELYDLIQEGMQGLIRGAEKFDASKGFRFSTYSHWWI 383 Query: 436 RQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIR 495 +QA+ +S+++Q++ R+P HM+E ++ +++ +++ R PT EE+A MP ++ Sbjct: 384 KQAMRKSVSEQSQIFRLPAHMVEASYRVKECIKRLRRKLKRRPTNEEIAADTGMPIKRVE 443 Query: 496 KVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTARE 555 + + K +S+++ IG D + D T E + S++ H L LT RE Sbjct: 444 AAVNLPKYSVSLDSKIGST-DMTYQEVTADPTAETAEEMLNRLSMKRDVHKALDTLTTRE 502 Query: 556 AKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 +V+ +RFG++ TL+E+G V+RERIRQIE+ A RKLR R L+ +L Sbjct: 503 RQVVTLRFGLEDGRIRTLQEIGNTMGVSRERIRQIESAAFRKLRSKKRVNALKDYL 558 >UniRef50_A5IY54 RNA polymerase sigma factor n=2 Tax=Mycoplasma RepID=A5IY54_MYCAP Length = 509 Score = 270 bits (691), Expect = 8e-71, Method: Composition-based stats. Identities = 144/470 (30%), Positives = 239/470 (50%), Gaps = 28/470 (5%) Query: 168 PNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQ 227 P+ + D+ + L+ + D D D D D + S++ + + + + Sbjct: 43 PDDDMDIMLELLLEENILADDFDDGDASFVNSDDIMDEVDAEKSMNKLDSSKSYDDSLDS 102 Query: 228 YVVTRDTIKAKGRSHATAQEEI-----------LKLSEVFKQFRLVPKQFDYLVNSMRVM 276 + + + + I + SE F Y + Sbjct: 103 KIQVKSNDTENLEDDSEYSKLIGNYSDNSYDSYEEESEDFMVMDDDYHDSSYDEDDEEDE 162 Query: 277 MDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIA----MNKPWSEKLHD 332 + +T ++ ++ + PK E A + KL + Sbjct: 163 I-VYKTDDKDQSATKSKRGRKPKDKLSLDTLELEDFSAEEIDLSANLSVKKEDLKNKLTE 221 Query: 333 VSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAK 392 ++ V ++ + + + L E+ ++ M G K +RA+ ++++ NLRLVI+ AK Sbjct: 222 TNDIVKWYMRWIGKYGK--LLQPEEEFELATEMDKGGFKGKRARDKLIKRNLRLVINNAK 279 Query: 393 KYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRI 452 KY NRGL F+DLI EGN G++KAV K+ +G+KFSTYATWWIRQAITR++ADQ+RT+R+ Sbjct: 280 KYKNRGLSFIDLISEGNSGIIKAVQKYNVNKGFKFSTYATWWIRQAITRAVADQSRTVRV 339 Query: 453 PVHMIETINKLNRISRQMLQEMGREPTPEELAERML--MPEDKIRKVLKIAKEPISMETP 510 PVHM+ETINK+ +I R++ QE G +PT EE+A+R +K+R + KI +PIS++ Sbjct: 340 PVHMVETINKITKIERELQQENGVDPTDEEIAQRYGNDFTAEKVRHIRKINIDPISLDKQ 399 Query: 511 IGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVL-AGLTAREAKVLRMRFGID--- 566 IG + DS DF++D ++ P+D A+ E L + +L L A E +++ R+G+ Sbjct: 400 IGKENDSSFSDFVKDESVVNPVDYASHEELVETLNAILKDTLDADEYELICKRYGVGFDN 459 Query: 567 ---MNTDYTLEEVGKQFDVTRERIRQIEAKALRKLR-HPSRSEVLRSFLD 612 ++LEE+ + +V++ERIRQIE K LRKL+ P RS L+ F++ Sbjct: 460 NGEKYKVFSLEELALERNVSKERIRQIENKILRKLKSSPERSRYLKVFME 509 >UniRef50_D1N7J7 RNA polymerase sigma factor n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7J7_9BACT Length = 428 Score = 270 bits (691), Expect = 9e-71, Method: Composition-based stats. Identities = 105/268 (39%), Positives = 174/268 (64%), Gaps = 1/268 (0%) Query: 341 LQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQ 400 Q+ + +E+ +T E++ R++ + + +++M+EANLRLVISIA+KY NRGL Sbjct: 152 RQRRKLLEDRFLMTYEELTGEIRKLLEIHEELQNLRQKMIEANLRLVISIAQKYRNRGLP 211 Query: 401 FLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI 460 F DLIQEGN+GL++A++KF++R G KFSTYA+WWI+ I+RSIA+Q+R IRIP HM+ I Sbjct: 212 FNDLIQEGNLGLLRALEKFDFRLGNKFSTYASWWIKHNISRSIAEQSRVIRIPAHMVHAI 271 Query: 461 NKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPI-GDDEDSHL 519 N + ++ +Q GREP +ELA + MP +I + K++ + IS++ P+ ++ + L Sbjct: 272 NSMTWAEQRFIQSHGREPEIDELAAVLEMPVARISAIRKMSCQTISLQAPVSSSEDGAML 331 Query: 520 GDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQ 579 D I D + P+ + L +++L L R+ +++ +RFG+ L ++ ++ Sbjct: 332 EDLIADDSTANPVRDFARKILYDKLYEMLRTLPERDQQIIILRFGLFGQPCLPLVDISRR 391 Query: 580 FDVTRERIRQIEAKALRKLRHPSRSEVL 607 F++TRERIRQ+EAK + LR P++ + L Sbjct: 392 FNLTRERIRQLEAKIIENLRSPAKLKYL 419 >UniRef50_Q6A8Y3 RNA polymerase principal sigma factor HrdD n=2 Tax=Propionibacterium acnes RepID=Q6A8Y3_PROAC Length = 312 Score = 270 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 96/286 (33%), Positives = 159/286 (55%), Gaps = 3/286 (1%) Query: 315 WFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARR 374 + + + + ++ + + +E T + A Sbjct: 22 YLDGIARTPLLNAAEEVALARRIEAGVFARAILEGHAETTSDTTTKELH---QIAADGDE 78 Query: 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 434 A V ANLRLV+S+A+KY + LDL+QEGN GL++AV+KF+Y +G+KFSTYATWW Sbjct: 79 ALAHFVRANLRLVVSVARKYGRSQMPLLDLVQEGNTGLIRAVEKFDYAKGFKFSTYATWW 138 Query: 435 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKI 494 +RQAI+R IA Q R +R+PVH+ E +N+++ R + +++GREP E+A+ + + E+++ Sbjct: 139 VRQAISRGIAQQGRIVRLPVHVAEQVNQVSAARRNLERQLGREPETFEIADELEITEERV 198 Query: 495 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAR 554 ++++ ++ +S++ P+ DD D+ LGD I T P D R+ +L L R Sbjct: 199 IELIRFGRDHVSLDAPVEDDGDTSLGDLIARETSPGPDDIVLDAEDRSRLEGLLDDLDER 258 Query: 555 EAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 600 A V+R R+G+ L ++GK + +T ER+RQIE AL +R Sbjct: 259 SADVVRRRYGLVDGRQAKLADIGKVWGITAERVRQIERAALASMRQ 304 >UniRef50_Q3LW61 Sigma 2 transcription factor n=1 Tax=Bigelowiella natans RepID=Q3LW61_BIGNA Length = 389 Score = 270 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 110/386 (28%), Positives = 200/386 (51%), Gaps = 15/386 (3%) Query: 240 RSHATAQEEILKLSEVFKQFR--LVPKQFDYLVNSMRVMMDRVRTQERL--IMKLCVEQC 295 ++ + L+ K + ++ + + + + Sbjct: 2 KNSVKIIKLKKMLNNTSMTLENNYNIKNINRYSQPLKNSISKAYENRKASSVNNYKNNLD 61 Query: 296 KMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEK---LHDVSEEVHRALQKLQQIEEETG 352 + K + +E + N S + + +++ R ++E + G Sbjct: 62 NLFDKQIVDFSYIDELNKKKINLKHKNKNNTSTNESIIMEWVKDLLRWEDLFLKLENKLG 121 Query: 353 L------TIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQ 406 + + D+ + A + +K+ +++ +L+L+ISIAK+Y GL F DLI Sbjct: 122 FYPTIDFFTKGIIDLTSEIKERLAIGKISKEILIKRSLKLIISIAKRYNGCGLSFEDLIA 181 Query: 407 EGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRI 466 EG +GLMK + K+++ +G+KFSTYA WWIRQ+I+RSI DQ+R IR+PV++ E ++K+N+I Sbjct: 182 EGILGLMKGIRKYDFSKGHKFSTYAHWWIRQSISRSIDDQSRIIRLPVYVKEILSKINKI 241 Query: 467 SRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSH--LGDFIE 524 + ++ R PT EE++ + +P K+RK+L + IS+++ I +D + L D IE Sbjct: 242 KNKFYEDKKRYPTEEEISLLIGIPLKKLRKLLLSCNDLISLDSLIENDSNDSNMLNDSIE 301 Query: 525 DTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTR 584 D+ + A +SL+ + L L+ RE+ V+R+R+G+D + TLEE+G+ +VTR Sbjct: 302 DSKVINSEVYAIEKSLKQDLNKALLTLSDRESAVIRLRYGLDDGNERTLEEIGEYLNVTR 361 Query: 585 ERIRQIEAKALRKLRHPSRSEVLRSF 610 ER RQIE KAL+KL+ + + + + Sbjct: 362 ERARQIEIKALKKLQFNTSNYLFSDY 387 >UniRef50_A4AF82 RNA polymerase sigma factor n=9 Tax=Bacteria RepID=A4AF82_9ACTN Length = 1108 Score = 270 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 119/388 (30%), Positives = 187/388 (48%), Gaps = 20/388 (5%) Query: 243 ATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPK--- 299 AQ ++SE + P D +++ R+ + + E+ ++ ++ + + Sbjct: 536 DEAQAPESEMSERESHGQPTPSDIDRVIS-ARIKREVAQDAEQAALQAAKDEARDARYAR 594 Query: 300 KNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEE---VHRALQKLQQIEEETGLTIE 356 + T + + + L + + + L E E GL + Sbjct: 595 EAARGELTDDGERMQLIPDVLGASDDLVLDLRQRLNDFPLLSADQEVLLAREIEAGLFAQ 654 Query: 357 QVKDINRRM----------SIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQ 406 + D+ R +A +N RLV SIA++Y N GL + DLIQ Sbjct: 655 EQFDLLDRREQRSPSGRELQWVAKNGEKAFARFAASNYRLVFSIARRYVNNGLDYADLIQ 714 Query: 407 EGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRI 466 EG +GL++A+ KF+Y +G+KFSTYATWW+RQAITR++AD TIRIPVHM+E NKL + Sbjct: 715 EGALGLLRAIQKFDYMKGFKFSTYATWWVRQAITRALADLGSTIRIPVHMVEQQNKLRQA 774 Query: 467 SRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDED-SHLGDFIED 525 +R + R+PT ELA + E + L +S++ + E L + + D Sbjct: 775 ARSFELQNDRKPTISELAAGAEVTEQDASRALGYEYSFLSIDKELDPGEGFGSLHNLLVD 834 Query: 526 TTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRE 585 ++ P+D R A ++VL+ L RE+ ++MRFGI TL+ +G F VTRE Sbjct: 835 ESVA-PVDLLIHAEFRGAMNNVLSALPKRESTTIQMRFGIGGQDPATLDHIGDIFGVTRE 893 Query: 586 RIRQIEAKALRKLRHPSRSE-VLRSFLD 612 RIRQIE K + LR + + L FLD Sbjct: 894 RIRQIEKKTMESLRSSAEVQGRLGDFLD 921 >UniRef50_Q9ZSL6 Sigma-like factor n=2 Tax=Arabidopsis thaliana RepID=Q9ZSL6_ARATH Length = 419 Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 84/267 (31%), Positives = 147/267 (55%) Query: 346 QIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLI 405 + E + L R + + + A++++ RLV+SIA Y +GL DLI Sbjct: 150 ENEMVSVLLASGRGKKKRSANEILCRRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLI 209 Query: 406 QEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNR 465 QEG+IGL++ ++F+ RGYK STY WWI+QAI R+IA ++R +++P M E K+ Sbjct: 210 QEGSIGLLRGAERFDPDRGYKLSTYVYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAE 269 Query: 466 ISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIED 525 S + +++ R+P+ EE+AE + + +R ++ ++ P+S++ + L + + Sbjct: 270 ASNVLTRKLRRQPSCEEIAEHLNLNVSAVRLAVERSRSPVSLDRVASQNGRMTLQEIVRG 329 Query: 526 TTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRE 585 P + E ++ +L LTARE++VL + FG++ T + EE+GK ++RE Sbjct: 330 PDETRPEEMVKREHMKHEIEQLLGSLTARESRVLGLYFGLNGETPMSFEEIGKSLKLSRE 389 Query: 586 RIRQIEAKALRKLRHPSRSEVLRSFLD 612 R+RQI AL+KLR+ L+ + Sbjct: 390 RVRQINGIALKKLRNVHNVNDLKIYYS 416 >UniRef50_Q0F2K4 RNA polymerase sigma factor n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F2K4_9PROT Length = 282 Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 103/266 (38%), Positives = 163/266 (61%), Gaps = 4/266 (1%) Query: 343 KLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL 402 +++I LT + + +R+ G+ + A MV+ANLRLV+ I+++Y NRG+ Sbjct: 14 YMREISRYELLTAAEEIALAKRIGAGDKE---AHHYMVQANLRLVVKISRRYMNRGVALA 70 Query: 403 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 462 DLI+EGN+GL++AV+KF+ G +FSTYATWWIRQA+ R+I +Q+RTIR+PVH+ + + Sbjct: 71 DLIEEGNLGLIRAVEKFDVTHGCRFSTYATWWIRQAVERAIMNQSRTIRVPVHVGKELYA 130 Query: 463 LNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDF 522 L + + ++ E+ R+PT E+AE M + +I++++ A S + + DD D L D Sbjct: 131 LTKHTNRLRSELERDPTDVEIAEAMGVSVQRIQELMGAAVRTDSADDMLHDDSDFTLYDV 190 Query: 523 IEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDM-NTDYTLEEVGKQFD 581 D E P D T ++ L +E +V+R+R+G+D +TLE +G+Q Sbjct: 191 TADEAAESPGDQMQTVLRNEILQVWMSKLEKKEREVVRLRYGLDDAGDPWTLEMIGEQLG 250 Query: 582 VTRERIRQIEAKALRKLRHPSRSEVL 607 VTRERIRQI+ +AL+KLR E + Sbjct: 251 VTRERIRQIQVQALQKLRRIVSQENI 276 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%) Query: 96 DPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEE 155 +P+ +YMRE+ ELLT EI +AKRI G + + + + +++ R Sbjct: 9 EPMAIYMREISRYELLTAAEEIALAKRIGAGDKEAHHYMVQA--NLRLVVKISRRYMNRG 66 Query: 156 ARLSDLIT 163 L+DLI Sbjct: 67 VALADLIE 74 >UniRef50_B1K0Z2 RNA polymerase sigma factor n=2 Tax=Burkholderiales RepID=B1K0Z2_BURCC Length = 857 Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats. Identities = 105/274 (38%), Positives = 157/274 (57%), Gaps = 4/274 (1%) Query: 331 HDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISI 390 + E + + + E L + + + + A++ M ANL+LV + Sbjct: 471 QAIRETLSALRLNRRFLLELADLADGGDSGLASQYANAMKAYQLARERMAVANLKLVFHL 530 Query: 391 AKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTI 450 AKKY G DL QEGNIGL+KAV++F++RRG+KFSTYATWWIRQ I R +AD+ RT+ Sbjct: 531 AKKYRYSGEPLDDLAQEGNIGLLKAVERFDWRRGFKFSTYATWWIRQQIGRHLADKCRTV 590 Query: 451 RIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMET- 509 R+PVH+ E +L+R ++ + E GR P E+A R+ M K+ ++ ++A EP+ + Sbjct: 591 RVPVHVHEKAQRLSRETQALESETGRAPELHEIAARLNMAVQKVAELQRLAPEPLPIHEL 650 Query: 510 PIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNT 569 PI ++ + D P+D + L +L+ L +E + LR+RFGI + Sbjct: 651 PI---DELIAVEVRSDFVSPDPMDIVSKSELLETIDKLLSTLKPKEEQTLRLRFGIGVEE 707 Query: 570 DYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 603 TLEE+G Q+ VTRER+RQIE ALR L+HP R Sbjct: 708 ALTLEEIGCQYGVTRERVRQIEVAALRNLKHPRR 741 Score = 94.7 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 39/241 (16%), Positives = 85/241 (35%), Gaps = 20/241 (8%) Query: 37 DSDQIEDIIQMINDMGIQVMEEAP------DADDLMLAENTADEDAAEAAAQVLSSVESE 90 + D + +IND+G +V E + + + D E A L+S++S Sbjct: 266 NPDVEAQLSMIINDLGAEVDERFEYASVSATENFEVYVKPEESPDEEEIVANALTSIDSL 325 Query: 91 IGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDR 150 T+P+ +Y +E L++ + E+ +++ +E + + ++A +P I L Sbjct: 326 ASNRTEPLYIYQKEFQRKRLISADEEVALSRAMESELERALDALAAWPRGIDLTLAAGHV 385 Query: 151 VEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDN 210 V + L+ L G D +E + + + + + + D + + D Sbjct: 386 VRTGQQPLAWLSLGPADTQSELEPTSEGENDAGAATSDPTGETAEHDSDLQFEICPRGDQ 445 Query: 211 SIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLV 270 + D ++ D + A + E RL + L Sbjct: 446 ASD--------------FMDALDRLAGLPVGSAQQGAGWQAIRETLSALRLNRRFLLELA 491 Query: 271 N 271 + Sbjct: 492 D 492 >UniRef50_A9G730 RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G730_SORC5 Length = 463 Score = 269 bits (687), Expect = 3e-70, Method: Composition-based stats. Identities = 130/475 (27%), Positives = 220/475 (46%), Gaps = 17/475 (3%) Query: 134 VAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDD 193 + E P + L E + +++ T +P + P ++ G+ SQ Sbjct: 1 MNESPTSSRLLGEAETTIMEGRGAVAE--TRAEEPIGADTRPPPSSRRGAPTSQRAAPPA 58 Query: 194 EDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLS 253 ++ ++ L+RE EL + + + A + L+ Sbjct: 59 RPSEDVAAVYLQEISASAP---LSRELEVELGRRIESAERAMVEAWVASPVALRALAALA 115 Query: 254 EVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSD 313 + + R+ + D + ++ L + + + Sbjct: 116 DDVRAGRVDMSDLLLNADGGDAPSDATSVRMARLLGLARSLAEAGRTEA--SGQRARAAL 173 Query: 314 TWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKAR 373 + + + ++ E++ A+ +L + E L+ + + E Sbjct: 174 SAGLSDVRLSPRVDERIERALSAAIPAVDRLGRQAIEGTLSAMRAARREAAEARAEM--- 230 Query: 374 RAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW 433 V ANLRLV + A++ +RG+ LDLIQEGN+GL++A +KF+YRRGY+FSTYA W Sbjct: 231 ------VRANLRLVAAAARQLRHRGVPLLDLIQEGNLGLIRAAEKFDYRRGYRFSTYAMW 284 Query: 434 WIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDK 493 WI+QA++R++ Q + IR+PVH+ ET + + R++ QE RE PEE+AER + +K Sbjct: 285 WIKQALSRALLYQGQVIRVPVHIAETRRRALQARRELEQEHAREAAPEEVAERSGLSMEK 344 Query: 494 IRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTA 553 ++ + ++A P+ ++ P+GDD+ + GDF P + L A +L LT Sbjct: 345 LQALREMALPPVYLDAPVGDDDGARQGDFFASEGAA-PDELLVHRRLHAQVSALLESLTP 403 Query: 554 REAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLR 608 RE VLR+RFG+D +TL E+G F V+RER+RQIE AL KLR SR + L Sbjct: 404 RERDVLRLRFGLDGGQPHTLAEIGGMFSVSRERVRQIEESALSKLRTLSRRQALE 458 Score = 71.6 bits (174), Expect = 8e-11, Method: Composition-based stats. Identities = 45/319 (14%), Positives = 101/319 (31%), Gaps = 21/319 (6%) Query: 46 QMINDMGIQVMEE----APDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMY 101 +++ + +ME A + + +T ++ A + D +Y Sbjct: 9 RLLGEAETTIMEGRGAVAETRAEEPIGADTRPPPSSRRGAPTSQRAAPPARPSEDVAAVY 68 Query: 102 MREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDL 161 ++E+ L+RE E+++ +RIE + + P A+ L D V A +SDL Sbjct: 69 LQEISASAPLSRELEVELGRRIESAERAMVEAWVASPVALRALAALADDVRAGRVDMSDL 128 Query: 162 ITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKF 221 + +A D L++ + E + S D L+ Sbjct: 129 LLNADGGDAPSDATSVRMARLLGLARSLAEAGRTEASGQRARAALSAGLS-DVRLSPRVD 187 Query: 222 AELRAQYVVTRDTIKAKGRSHAT----------AQEEILKLSEVFKQFRLVPKQFDYLVN 271 + + GR + + V RLV L + Sbjct: 188 ERIERALSAAIPAVDRLGRQAIEGTLSAMRAARREAAEARAEMVRANLRLVAAAARQLRH 247 Query: 272 SMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLH 331 ++D ++ +++ K ++ + + + W A++ + ++ Sbjct: 248 RGVPLLDLIQEGNLGLIRAA------EKFDYRRGYRFSTYAMWWIKQALSRALLYQGQVI 301 Query: 332 DVSEEVHRALQKLQQIEEE 350 V + ++ Q E Sbjct: 302 RVPVHIAETRRRALQARRE 320 >UniRef50_D0LRC2 RNA polymerase sigma factor n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LRC2_HALO1 Length = 436 Score = 268 bits (686), Expect = 4e-70, Method: Composition-based stats. Identities = 128/432 (29%), Positives = 210/432 (48%), Gaps = 12/432 (2%) Query: 185 LSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHAT 244 SQ +D + N + P+ + + AE + + + H Sbjct: 3 DSQTTQRRAKDGSSSSRSSQTRSSRNRLAPKNSSRRGAETASAHDDYLASYFRDLSEHDL 62 Query: 245 AQEEILKL---------SEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQC 295 + E + ++ P D+++ + +D R++ + Sbjct: 63 LEPEQEREIARRIEEEEVHTWECLLSHPSAADFVLARVEGRLDNSLKDFRVVRRTATAAR 122 Query: 296 KMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTI 355 K K + A+ +++ E + E + Q Sbjct: 123 KARTKASRDKLNRAAVTAAIKIRALDLDRTHVEAIIAELEALRDGSASGSQPRPSFAPKS 182 Query: 356 EQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKA 415 + R + A+ R + E V ANLRLV+++A++Y G+ DLIQEGN+GLM A Sbjct: 183 RSFGEYLRAVKSSFARGARLRNEFVHANLRLVVTMARRYDRGGMPLADLIQEGNLGLMHA 242 Query: 416 VDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMG 475 V +F+YRRG +FSTYA WWIR AI R++AD++R +RIPVHM+E +L ++ +++ E+G Sbjct: 243 VSRFDYRRGLRFSTYACWWIRHAIGRALADKSRAVRIPVHMLEAQQQLAKVQAKLIGELG 302 Query: 476 REPTPEELAERMLMPEDKIRKVLK-IAKEPISMETPIGDDEDSHLGDFIEDTTLE--LPL 532 REPTP ELA+ +P K+ ++ + + +P+S++ P+ DD+D GD + D E P+ Sbjct: 303 REPTPSELAKAAQVPLAKLNQMHRYLMGQPMSLDRPLYDDDDRAFGDMLADPLSEDSSPV 362 Query: 533 DSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEA 592 D TT++L + +L LT EA VLR RFG+ + + T E+G Q+D++RERIRQI+ Sbjct: 363 DDLTTQTLTSRVETLLDHLTPIEADVLRQRFGLMDDEERTFREIGDQYDLSRERIRQIQN 422 Query: 593 KALRKLRHPSRS 604 AL KLR Sbjct: 423 AALGKLRRALER 434 >UniRef50_B1WQH6 RNA polymerase sigma factor n=5 Tax=Chroococcales RepID=B1WQH6_CYAA5 Length = 297 Score = 268 bits (685), Expect = 5e-70, Method: Composition-based stats. Identities = 106/304 (34%), Positives = 174/304 (57%), Gaps = 15/304 (4%) Query: 303 ITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDIN 362 + +T + + + ++EE+ L + + + ++ Sbjct: 1 MPTKKKVDTVRHYLQSIGKTPLLSGPEEIKLAEEIQA------------MLPLLEKEALS 48 Query: 363 RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR 422 + AK +RA+ +M++ANLRLV+SIAKKY N GL LDLIQEG++GL++ V+KF+ Sbjct: 49 KEEEKIVAKGQRARDKMIQANLRLVVSIAKKYLNSGLSLLDLIQEGSLGLIRGVEKFDPS 108 Query: 423 RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEE 482 RGYKFSTYA WWIRQ ITR+IA+Q+RTIR+P+H+ E +NK + R++ ++GR+PT +E Sbjct: 109 RGYKFSTYAYWWIRQGITRAIAEQSRTIRLPIHINENLNKYRKSIRELTLKLGRKPTQQE 168 Query: 483 LAERMLMPEDKIRKVLKIAKEP--ISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESL 540 +AE M + DK+R + + A + S+ I D+ + LG + D P D + Sbjct: 169 IAENMDISVDKLRFLQQAAFKTKSRSLNIVI-DENHTELGQLLPDEDSVSPSDFVKQQEK 227 Query: 541 RAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 600 + + +L L+ R+ +V+ +RFG+ + + +G+Q ++ ER RQI ++ALR LR Sbjct: 228 ISQINRMLENLSPRQKEVIILRFGLRDGKQLSYKAIGEQCGISHERARQIYSRALRILRK 287 Query: 601 PSRS 604 S Sbjct: 288 QSSK 291 Score = 43.1 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 42/304 (13%), Positives = 89/304 (29%), Gaps = 36/304 (11%) Query: 96 DPVRMYMREMGTVELLTREGEIDIAKRIEDG-------------------INQVQCSVAE 136 D VR Y++ +G LL+ EI +A+ I+ + + + + Sbjct: 8 DTVRHYLQSIGKTPLLSGPEEIKLAEEIQAMLPLLEKEALSKEEEKIVAKGQRARDKMIQ 67 Query: 137 YPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDE 196 + ++ + L DLI E L + S+ Sbjct: 68 A--NLRLVVSIAKKYLNSGLSLLDLI-------QEGSLGLIRGVEKFDPSRGYKFSTYAY 118 Query: 197 DEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVF 256 A + S L L R+ GR T QE + Sbjct: 119 WWIRQGITRAIAEQSRTIRLPIHINENLNKYRKSIRELTLKLGRK-PTQQEIAENMDISV 177 Query: 257 KQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWF 316 + R + + R + + + +L ++ + +F+ + Sbjct: 178 DKLRFLQQA--AFKTKSRSLNIVIDENHTELGQLLPDEDSVSPSDFVKQQEK----ISQI 231 Query: 317 NAAIAMNKPWSEKLHDVSEEVHRALQKL-QQIEEETGLTIEQVKDINRRMSIGEAKARRA 375 N + P +++ + + Q + I E+ G++ E+ + I R K Sbjct: 232 NRMLENLSPRQKEVIILRFGLRDGKQLSYKAIGEQCGISHERARQIYSRALRILRKQSSK 291 Query: 376 KKEM 379 + + Sbjct: 292 IERL 295 >UniRef50_B9L491 RNA polymerase sigma factor n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L491_THERP Length = 334 Score = 268 bits (684), Expect = 6e-70, Method: Composition-based stats. Identities = 110/295 (37%), Positives = 169/295 (57%), Gaps = 9/295 (3%) Query: 306 FTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRM 365 N+ +F ++ + S V L ++IE E ++ + Sbjct: 39 QAANDAVYRYFREVGGHRLLTHQEEIEYSRAVRAGLAARKRIE-----AGEDTPELRELV 93 Query: 366 SIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGY 425 G+ A+++++ NLRLV+SIAK+Y + L +DLIQEGNIGLM AV++++ GY Sbjct: 94 RKGQE----AREKLIRHNLRLVVSIAKRYRSSELPLIDLIQEGNIGLMTAVERYDPELGY 149 Query: 426 KFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAE 485 +FSTYAT+WIRQAI R++A+ +RTIR+PVHM + I K+ R Q+ Q+ GR T EELAE Sbjct: 150 RFSTYATFWIRQAIGRAVANLSRTIRVPVHMHDLIAKIRRAEAQIEQQKGRPATNEELAE 209 Query: 486 RMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATH 545 + + +I + S++ PIG+D +S +GD + D + ++ A T ++R Sbjct: 210 LLGIDVARIEQARTQIPRTSSLDKPIGEDGESSIGDLLPDPRSDDVVEEALTNAIREQIR 269 Query: 546 DVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 600 L LT RE VL MRFG+D TL E+ ++RER+RQ+E +AL+KLR+ Sbjct: 270 RSLEQLTERERTVLVMRFGLDGEQPRTLAEIADALKISRERVRQVEKEALQKLRN 324 >UniRef50_Q8LK21 Chloroplast RNA polymerase sigma factor, c n=4 Tax=Chlamydomonas reinhardtii RepID=Q8LK21_CHLRE Length = 752 Score = 267 bits (683), Expect = 8e-70, Method: Composition-based stats. Identities = 107/302 (35%), Positives = 176/302 (58%), Gaps = 10/302 (3%) Query: 301 NFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKD 360 NF+ T D + L V + + L + EE V+ Sbjct: 420 NFLGKVESLSTLDVEKEREVTAVCRDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVES 479 Query: 361 INRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE 420 + R G +AK+ ++++N +LV+++ K + +G DL+ EG GL+K V+K++ Sbjct: 480 LKLRYDAG----LKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYD 535 Query: 421 YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTP 480 +G++F TYA WWIRQA++RS+A+ R +R+P+HMIE + +L +S ++ ++ REPT Sbjct: 536 ATKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSAKLQTQLAREPTL 595 Query: 481 EELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDT---TLELPLDSATT 537 ELA+ +P +++ +++ A+ S++TPIG +E LG ++D+ E + + Sbjct: 596 PELAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGS 652 Query: 538 ESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRK 597 +SLR +L L REA+V+R+RFG+D ++TLEE+G+ +VTRERIRQIEAKALRK Sbjct: 653 DSLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRK 712 Query: 598 LR 599 LR Sbjct: 713 LR 714 >UniRef50_D1A523 RNA polymerase sigma factor n=3 Tax=Actinomycetales RepID=D1A523_THECD Length = 360 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 107/289 (37%), Positives = 174/289 (60%), Gaps = 4/289 (1%) Query: 314 TWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKAR 373 + + + +++ D+++ + L +EE+ +++ ++ G Sbjct: 21 AYLDRIGRTHLLDAQEEVDLAKAIEGGLYAEHLLEEDRVPPGVTRQELEELVAAGVR--- 77 Query: 374 RAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW 433 AK+ VEANLRLV+SIA+KY L +DLIQEGN+GLM+AV+KF+YRRG+KFSTYATW Sbjct: 78 -AKQRFVEANLRLVVSIARKYPTDALPLIDLIQEGNLGLMRAVEKFDYRRGFKFSTYATW 136 Query: 434 WIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDK 493 WIRQ+I R ++ ARTIR+PVH+ E +++L R RQ+ +E+GREPT EELAE + D Sbjct: 137 WIRQSIGRGLSHTARTIRLPVHVEEELSRLRRAERQLGRELGREPTREELAEALGAAVDH 196 Query: 494 IRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTA 553 + ++L+ ++P S++ + D ++ +GD +ED P A +L L Sbjct: 197 VDELLRWRRDPASLDAAVDDAGETPMGDLLEDPEGVSPEAEVLALDDIAGLARLLDRLPE 256 Query: 554 REAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 602 RE+ +LR RFGI+ + ++G ++ ++ R+RQI ++LR+LR + Sbjct: 257 RESAILRARFGIEDGQPLSYAQIGARYGLSHNRVRQITDRSLRRLRQLA 305 >UniRef50_A5UVI3 RNA polymerase sigma factor n=1 Tax=Roseiflexus sp. RS-1 RepID=A5UVI3_ROSS1 Length = 398 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 99/301 (32%), Positives = 157/301 (52%), Gaps = 2/301 (0%) Query: 314 TWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKAR 373 + + +L ++E + + L + Sbjct: 97 EMLAEMMGRAGEFDHELLSAADERRLLEIYHDGLRAKRELQSGLSSVQQYAAERRIKASE 156 Query: 374 RAKKEMVEANLRLVISIAKKYT--NRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYA 431 A ++ NLRLV IA +Y R L F DL+QEG IGL+KA+++F+ + STYA Sbjct: 157 EAIDTLMRCNLRLVAKIATRYMPYARHLTFDDLLQEGRIGLLKAIERFDQNCRGRLSTYA 216 Query: 432 TWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPE 491 +WIRQ+I R++ADQ R +R+PVH++E +++L + Q GREP ELA + + Sbjct: 217 VYWIRQSIQRALADQDRMVRLPVHIVEQLHRLRKTCEQFRCIHGREPGDAELANALGVSL 276 Query: 492 DKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGL 551 K+R + ++A+ S++ P+G D ++ LG+ I D E P + L A +VL L Sbjct: 277 AKVRSLWRVAQHHTSIDRPVGADTNTFLGELIADDREEGPDFICEQQLLHAVLREVLGHL 336 Query: 552 TAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 ++RE +L R+G+ +TLEE+G+ F +TRERIRQIE KAL++L +L+ FL Sbjct: 337 SSRERDILERRYGLIDGQTHTLEEIGQIFGLTRERIRQIERKALKRLNRGEYRRILQPFL 396 Query: 612 D 612 Sbjct: 397 Y 397 >UniRef50_O24621 Sigma factor 3 n=3 Tax=Brassicaceae RepID=O24621_ARATH Length = 571 Score = 265 bits (677), Expect = 3e-69, Method: Composition-based stats. Identities = 86/318 (27%), Positives = 158/318 (49%), Gaps = 5/318 (1%) Query: 296 KMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTI 355 +P+ + + ++ + + ++ K+ + Sbjct: 257 DVPRVRRPPKYRKKRERISRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAG 316 Query: 356 EQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKA 415 K + R + G + E+V++ LV+ +A+ Y G+ DLIQ G +G+++ Sbjct: 317 MNEKLLMRNLHYG----WYCRDELVKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQG 372 Query: 416 VDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMG 475 ++F++ RGYKFSTY +WIR++++ ++ AR + IP +I TIN + + + + G Sbjct: 373 AERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHG 432 Query: 476 -REPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDS 534 + EE+A+ KIR + K S++ +GD + +F DTT+E P ++ Sbjct: 433 IKYAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEA 492 Query: 535 ATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKA 594 +S R HD+L GL RE +V+ +R+G+ +LEE+GK V++E IR+IE +A Sbjct: 493 VMRQSARRDIHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIERRA 552 Query: 595 LRKLRHPSRSEVLRSFLD 612 + KLR +E LR +L+ Sbjct: 553 MAKLRDQPNAEDLRYYLN 570 >UniRef50_C1SKA7 RNA polymerase sigma factor n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SKA7_9BACT Length = 301 Score = 265 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 96/288 (33%), Positives = 165/288 (57%), Gaps = 4/288 (1%) Query: 325 PWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANL 384 + K+ L I +T Q I R+ G+ A ++ NL Sbjct: 18 ATTAKVMPAPVSETSLKHYLNSISAYKPMTKAQEFAIGERIQAGDED---ALNTLILCNL 74 Query: 385 RLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIA 444 + V+SIA +Y N GL D+I +GN+GL++A +F++ + KF +YA WWIRQ+I +++A Sbjct: 75 KFVVSIANRYRNTGLPIADIINQGNLGLVEAAKRFDHTKDVKFISYAVWWIRQSIIQALA 134 Query: 445 DQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEP 504 +Q+ T+++P+ + K+N + ++ +++ REPT ELAE++ M E I VL++++ Sbjct: 135 EQSGTVKLPIKQAGILYKINGATEKLNKKLNREPTASELAEQLEMDEADIENVLRVSRNY 194 Query: 505 ISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFG 564 +S+E PI D ED D +E T ++ D + L+ A D++ L RE++++ RFG Sbjct: 195 LSLEAPIKDGEDRSFIDLLESGTKDIEEDIISKT-LKTALDDIVDELDERESQIIEWRFG 253 Query: 565 IDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 ++ TLEE+G+ D++RER+RQ+E +AL KLR + L+ FL+ Sbjct: 254 LNEEAPKTLEEIGELMDISRERVRQLETRALSKLRKKAMKNKLQDFLN 301 Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 29/273 (10%), Positives = 84/273 (30%), Gaps = 14/273 (5%) Query: 83 VLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAIT 142 ++ + ++ Y+ + + +T+ E I +RI+ G ++ + Sbjct: 18 ATTAKVMPAPVSETSLKHYLNSISAYKPMTKAQEFAIGERIQAGDEDALNTLILC--NLK 75 Query: 143 YLLEQYDRVEAEEARLSDLIT----GFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDE 198 +++ +R ++D+I G V+ D + + + E Sbjct: 76 FVVSIANRYRNTGLPIADIINQGNLGLVEAAKRFDHTKDVKFISYAVWWIRQSIIQALAE 135 Query: 199 EDGDDDSADDDNSIDPELAREKFAELRAQ-YVVTRDTIKAKGRSHATAQEEILKLSEVFK 257 + G I ++ + T + + E +L++S + Sbjct: 136 QSGTVKLPIKQAGILYKINGATEKLNKKLNREPTASELAEQLEMDEADIENVLRVSRNYL 195 Query: 258 QFRLVPKQFDYLVNSMRVMMDRVRTQERLI-MKLCVEQCKMPKKNFITLFTGNETS-DTW 315 K + R +D + + + I + + K + + E+ W Sbjct: 196 SLEAPIKDGED-----RSFIDLLESGTKDIEEDIISKTLKTALDDIVDELDERESQIIEW 250 Query: 316 FNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIE 348 E++ ++ + +++L+ Sbjct: 251 RFGLNEEAPKTLEEIGELMDISRERVRQLETRA 283 >UniRef50_Q84LK8 Os08g0242800 protein n=5 Tax=Poaceae RepID=Q84LK8_ORYSJ Length = 572 Score = 264 bits (676), Expect = 5e-69, Method: Composition-based stats. Identities = 89/315 (28%), Positives = 149/315 (47%), Gaps = 5/315 (1%) Query: 298 PKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQ 357 P K F+ E + K+ + ++ + + E Sbjct: 260 PFKLFLRDRETTEFLTAKEERHLFSKIQILMKIEEAHRKLEVQCGREPTLAEWAEAVGMS 319 Query: 358 VKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD 417 K++ + G +++M +N RLVI +A+KY GL DL+Q+G GLMK + Sbjct: 320 SKELQSSIRTGRR----CREKMARSNFRLVIHVARKYEGYGLDIQDLVQDGCSGLMKTFE 375 Query: 418 KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE 477 KF +G +F TYA WWIRQ+I +SI +R IR+P + + K+ + + + E G + Sbjct: 376 KFNPSKGCRFPTYAYWWIRQSIKKSIFKNSRLIRLPESVYALLRKVGKARMECIME-GEQ 434 Query: 478 PTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATT 537 PT +A R + +K+ K+ ++P SM+ + DE + ED +E P S Sbjct: 435 PTNANVARRAGITIEKLAKLRAKTRKPRSMQDHVWSDEGVTFQEITEDPNVEPPDLSVDR 494 Query: 538 ESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRK 597 +R D L L+ RE +++ RFGI TL +G F +++ERIRQ++ +AL K Sbjct: 495 MMMRQQVRDFLGILSPREKEIIEHRFGIHDGEPKTLHVIGDMFGLSKERIRQLQNRALEK 554 Query: 598 LRHPSRSEVLRSFLD 612 L+ + + + D Sbjct: 555 LKRSASLQGFDVYFD 569 >UniRef50_Q6KI01 RNA polymerase sigma factor n=1 Tax=Mycoplasma mobile RepID=Q6KI01_MYCMO Length = 488 Score = 264 bits (675), Expect = 6e-69, Method: Composition-based stats. Identities = 121/322 (37%), Positives = 191/322 (59%), Gaps = 9/322 (2%) Query: 301 NFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKD 360 + + F E S A + K + + E V + + + + E Sbjct: 165 DDLDEFIDLEYSANAKKGAKSKVKKSGNREIVIREIVKWYMSWVGKHGKVLDKEEEIKYS 224 Query: 361 INRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE 420 K ++A ++ NLRLVI+ AKKY NRGL F+DLI EGN GL+KA K++ Sbjct: 225 KQIEEDRNGRKGKKAFNALIHHNLRLVINNAKKYKNRGLSFIDLISEGNAGLIKAATKYD 284 Query: 421 YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTP 480 YRRG+KFSTYATWW+RQAITR++ADQAR +R+PVHM+ETINK+ +I R++ QE+G PT Sbjct: 285 YRRGFKFSTYATWWVRQAITRAVADQARIVRVPVHMVETINKIIKIERELHQELGVPPTD 344 Query: 481 EELAERML--MPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTE 538 +++AE+ +K++ + KI +PIS++ IG D+DS DF++D ++ PL+ A+ Sbjct: 345 KQIAEKYGNNFTAEKVQYIRKINIDPISLDKSIGKDDDSSFSDFVKDESVVSPLEFASQN 404 Query: 539 SLRAATHDVLA-GLTAREAKVLRMRFGIDMNTD------YTLEEVGKQFDVTRERIRQIE 591 L D+L L E +++ RFGI ++ D ++LEE+ + +++E++R +E Sbjct: 405 ELSGILTDILEKHLDEAERDLIKKRFGIGVDKDGNRISSHSLEELAAELQISKEKVRSLE 464 Query: 592 AKALRKLRHPSRSEVLRSFLDD 613 +K LRKL+HP + + L+ F + Sbjct: 465 SKILRKLKHPQKRKKLKEFYKN 486 >UniRef50_Q1ASS7 RNA polymerase sigma factor n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1ASS7_RUBXD Length = 282 Score = 264 bits (675), Expect = 6e-69, Method: Composition-based stats. Identities = 109/273 (39%), Positives = 169/273 (61%), Gaps = 4/273 (1%) Query: 342 QKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQF 401 Q L +I E LT + +++RR G+ A++ ++E+NLRLV++IAK+Y RG+ F Sbjct: 11 QYLGRIREGRLLTAGEEVELSRRARAGD---GAARRRLIESNLRLVVAIAKRYRGRGVPF 67 Query: 402 LDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETIN 461 DLIQEGN GL++AV+KF+ G +FSTYATWWIRQA+TR++ADQ R +R+P H+++++ Sbjct: 68 EDLIQEGNAGLIRAVEKFDPEMGNRFSTYATWWIRQAVTRAVADQGRAVRLPAHVVDSVY 127 Query: 462 KLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDED-SHLG 520 +L R + E+GREPT EE+A R+ ++ R++ ++++ S+ +GD+ED + LG Sbjct: 128 RLRRAESALSVELGREPTDEEVAGRLGTSPEEARRLREVSQPISSISARLGDEEDGAELG 187 Query: 521 DFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQF 580 D + D R + + L REA+VLR+R G+D TL EV + Sbjct: 188 DLLPDEAASEEYARVEAGPWRGVLREAVGSLPEREARVLRLRHGLDGERARTLREVSEIL 247 Query: 581 DVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 +++ER RQ+E KALR LR + LR L + Sbjct: 248 GISQERARQVELKALRTLRSGRYAGSLRRGLSE 280 Score = 41.9 bits (97), Expect = 0.071, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 2/72 (2%) Query: 91 IGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDR 150 T D + Y+ + LLT E+++++R G + + E + ++ R Sbjct: 2 AYATEDVLTQYLGRIREGRLLTAGEEVELSRRARAGDGAARRRLIES--NLRLVVAIAKR 59 Query: 151 VEAEEARLSDLI 162 DLI Sbjct: 60 YRGRGVPFEDLI 71 >UniRef50_Q9KI19 RNA polymerase sigma factor rpoS n=6 Tax=Coxiella burnetii RepID=RPOS_COXBU Length = 352 Score = 264 bits (674), Expect = 9e-69, Method: Composition-based stats. Identities = 114/288 (39%), Positives = 171/288 (59%), Gaps = 3/288 (1%) Query: 318 AAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKK 377 A N K + L+++ + L ++ I RR+ G+ K A+K Sbjct: 59 DAELANAKAKTKKRRETRSSDPTQIYLRELGFQPLLNAKEELKIARRVHKGDPK---ARK 115 Query: 378 EMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ 437 +M+EANLRLV+ IA+ Y NRGL FLDLI+EGN+GL+ AV+KF+ RG++FSTYATWWIRQ Sbjct: 116 QMIEANLRLVVKIARHYVNRGLPFLDLIEEGNLGLLTAVEKFDPERGFRFSTYATWWIRQ 175 Query: 438 AITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKV 497 I R+I +Q+RT+R+P+H+I+ +N R ++++ QE+ E TPE++A + P +IR++ Sbjct: 176 TIERAIMNQSRTVRLPIHVIKELNVYLRTAKKLTQEVDHEATPEDVAHLIDKPVQEIRRI 235 Query: 498 LKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAK 557 + +A S++ PI +D L D + D P L+ LA L R + Sbjct: 236 MDLAPSATSIDVPISEDGQKSLVDTLADDNNIDPARLIQNVDLQDHIERWLAQLDERHRE 295 Query: 558 VLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSE 605 V+ +RFG+ N TLE VGK +TRER+RQI+ AL++LRH E Sbjct: 296 VVILRFGLHENEKGTLEAVGKAVGLTRERVRQIQIDALQQLRHILEME 343 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 2/88 (2%) Query: 76 AAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVA 135 AE A + + R++DP ++Y+RE+G LL + E+ IA+R+ G + + + Sbjct: 59 DAELANAKAKTKKRRETRSSDPTQIYLRELGFQPLLNAKEELKIARRVHKGDPKARKQMI 118 Query: 136 EYPEAITYLLEQYDRVEAEEARLSDLIT 163 E + +++ DLI Sbjct: 119 EA--NLRLVVKIARHYVNRGLPFLDLIE 144 >UniRef50_D1HUY6 Whole genome shotgun sequence of line PN40024, scaffold_64.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D1HUY6_VITVI Length = 319 Score = 264 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 90/283 (31%), Positives = 151/283 (53%) Query: 329 KLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVI 388 K E R + + ++ E + E V + R +++ + ++ RLV+ Sbjct: 36 KEEAGLEAARRRIAETREHEPTSNQWAEAVGIKRSSLDKMLCNGRESRERINQSYRRLVV 95 Query: 389 SIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQAR 448 SIA +Y +GL DLIQEG+IGL++ ++F+ RGYK STY WWIRQAI R+IA+++R Sbjct: 96 SIAARYQGKGLSLQDLIQEGSIGLLRGAERFDPDRGYKLSTYVYWWIRQAIVRAIANKSR 155 Query: 449 TIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISME 508 IR+P + E + K+ + + + R PT +E+AE + + +R V + ++ PIS++ Sbjct: 156 IIRLPGSICEMVAKIAEARTVLSRRLRRLPTYDEIAEFIDVNVSTVRLVSERSRTPISVD 215 Query: 509 TPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMN 568 + L + I P + ++ L L REA +LR+ FGI+ Sbjct: 216 QAVTSQGCMTLQEIIPGPDETTPQKMVKRQLMKQEVERALNTLCEREAYILRLYFGINGE 275 Query: 569 TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 T + EE+G+ ++RER+RQI + AL KLR S + L+ ++ Sbjct: 276 TPLSFEEIGRLMKLSRERVRQINSIALSKLRQTSVVDYLKLYM 318 >UniRef50_A6GB19 RNA polymerase sigma factor n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GB19_9DELT Length = 384 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 104/381 (27%), Positives = 189/381 (49%), Gaps = 9/381 (2%) Query: 236 KAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQC 295 + S Q ++L + + + L +R ++D + + L Sbjct: 3 ACETYSSDEEQSAAVRLRKARSERWAALVSYPPLYPGVRKLIDERLEVDAALSDLLDRVG 62 Query: 296 KMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGL-- 353 + NE + A P + +++E + + ++ E + L Sbjct: 63 VAAEAYRKRRTLANEAAFAELCVAAGEALPEVDVDSELAERLIADVDRIANNERDGLLLD 122 Query: 354 ------TIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 407 + + R + R+ + +ANLRLV+S+A++ +N L DLIQE Sbjct: 123 VPRMPGDSRPFRIFHERCRRTAGRVRKYTNDFAKANLRLVVSLARRLSNGRLPLQDLIQE 182 Query: 408 GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 467 GNIGL+KA+++F++R+G++FSTYA+WWIR +I+R+I ++ R +R+PVH+ + K+ R+ Sbjct: 183 GNIGLLKAIERFDHRKGFRFSTYASWWIRHSISRAIYNKGRQVRLPVHVYDVHQKITRVR 242 Query: 468 RQMLQEMGREPTPEELAERMLMPEDKIRKVLKI-AKEPISMETPIGDDEDSHLGDFIEDT 526 R+ ++GREPT EE+A + +P K+ K+ I +S++ P+ ++D D +ED Sbjct: 243 RRYEAQIGREPTHEEIANEIGVPLAKVEKIAAIELGPIVSLDAPLSRNDDRSGVDLLEDQ 302 Query: 527 TLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRER 586 P L D L+ L EA +LR R+G+D TL E+G+++ ++RER Sbjct: 303 VSPGPGFELELGELEEGLEDALSALRPMEADILRRRYGLDGVEKETLREIGERYALSRER 362 Query: 587 IRQIEAKALRKLRHPSRSEVL 607 IRQ++ +A+ ++R L Sbjct: 363 IRQLQERAVSRMREEFARRSL 383 >UniRef50_Q2T2N0 RNA polymerase sigma factor n=32 Tax=pseudomallei group RepID=Q2T2N0_BURTA Length = 483 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 111/279 (39%), Positives = 176/279 (63%), Gaps = 6/279 (2%) Query: 334 SEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKK 393 + + RA+++L + + GEA+ A M EANLRLV+SIA+K Sbjct: 208 IDAMRRAMRRLPTP------PEQGDAGALPAFADGEARISAATARMAEANLRLVLSIARK 261 Query: 394 YTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIP 453 Y +RGL DL+QEGN+GL++A++KFEYRRG+KFSTYATWWIRQAI+R+IAD+ARTIR+P Sbjct: 262 YASRGLDLADLLQEGNLGLLRAIEKFEYRRGFKFSTYATWWIRQAISRAIADRARTIRVP 321 Query: 454 VHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGD 513 VH+ + ++ +++ ++ + G + EL+E + +++R VL + +EP S+ P+GD Sbjct: 322 VHVGDEARRVRKVADRIERRSGARASLAELSEATGLSAERLRAVLMLPREPRSLNAPLGD 381 Query: 514 DEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTL 573 D+ + GD +ED + D+ + +L ++A+EA +LR RFGI + ++ Sbjct: 382 DDQAEFGDIVEDASTPSLFDALAQGQMCDVVTSLLKTMSAQEADILRRRFGIGGDEPWSY 441 Query: 574 EEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 E++ Q V+RE+IR+IE +AL+ LR + + R FLD Sbjct: 442 EQIAAQAGVSREQIRRIEKRALQTLRITADACNARDFLD 480 Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 56/149 (37%), Gaps = 11/149 (7%) Query: 5 PQSQLKLLVTRGKEQGYLTYAEVNDHLPE----------DIVDSDQIEDIIQMINDMGIQ 54 + + L+ + YAE+ D D+ + + ++ G Sbjct: 10 YEQGIDRLLELACARDDTEYAELADEFASAPSDTHAHAHDLGEPEFLDR-HASDESAGTG 68 Query: 55 VMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTRE 114 + P A+ + +++ + + +TDP+ +++R M V LLT Sbjct: 69 SFGDKPTRAAHADADWHDGDVVDAQSSEPSDATPDDTAVSTDPLALFVRRMHAVPLLTHA 128 Query: 115 GEIDIAKRIEDGINQVQCSVAEYPEAITY 143 EI +A IE G QV ++AE + + Sbjct: 129 QEIALATEIEAGREQVLQALAETLDLLEL 157 >UniRef50_B7KCK0 RNA polymerase sigma factor n=2 Tax=Cyanothece RepID=B7KCK0_CYAP7 Length = 295 Score = 263 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 96/270 (35%), Positives = 171/270 (63%), Gaps = 4/270 (1%) Query: 337 VHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTN 396 ++ + + + L + + +++ + + AK++M++ANLRLV+SIAK+Y Sbjct: 22 LNSEEEVQLATKVQNMLPLLEKENLTAAEKKIVEQGQIAKRKMIQANLRLVVSIAKRYQR 81 Query: 397 RGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHM 456 RGL LDLIQEG++GL++AV+KF+ +GYKFSTYA WW+RQAITR++A+++RTIR+P+HM Sbjct: 82 RGLSLLDLIQEGSLGLIRAVEKFDPSKGYKFSTYAYWWVRQAITRALAEKSRTIRLPIHM 141 Query: 457 IETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPI--SMETPIGDD 514 E +N+L + R++ E+GR+P +E+A+RM +P +K+R++ S+ + DD Sbjct: 142 TENLNQLKKSVRELTGELGRKPNEQEVAQRMEIPVEKLREIRHAVYRTDAKSLNITL-DD 200 Query: 515 EDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLE 574 + LG+ + D T P++ + L +D+L L R+ +++ +RFG+ + + Sbjct: 201 NQTELGEVLPDETSL-PIEFVSQWELVTKINDLLEDLPPRQREIITLRFGLQTGKRMSYK 259 Query: 575 EVGKQFDVTRERIRQIEAKALRKLRHPSRS 604 E+G+Q ++ ER RQ+ +A+R L+ + Sbjct: 260 EIGRQCGISHERARQLLNRAMRTLKQKAFR 289 Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 77/266 (28%), Gaps = 46/266 (17%) Query: 96 DPVRMYMREMGTVELLTREGEIDIAKRIE--------DGINQVQCSVAEYPE-------- 139 DPVR Y++E+G + LL E E+ +A +++ + + + + E + Sbjct: 7 DPVRSYLQEIGRIPLLNSEEEVQLATKVQNMLPLLEKENLTAAEKKIVEQGQIAKRKMIQ 66 Query: 140 -AITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDE 198 + ++ R + L DLI E L + S+ Sbjct: 67 ANLRLVVSIAKRYQRRGLSLLDLI-------QEGSLGLIRAVEKFDPSKGYKFSTYAYWW 119 Query: 199 EDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQ 258 A + S L L R+ GR Sbjct: 120 VRQAITRALAEKSRTIRLPIHMTENLNQLKKSVRELTGELGRKPNE-------------- 165 Query: 259 FRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNA 318 + M + ++++R + + + + + T +T Sbjct: 166 --------QEVAQRMEIPVEKLREIRHAVYRTDAKSLNITLDDNQTELGEVLPDETSLPI 217 Query: 319 AIAMNKPWSEKLHDVSEEVHRALQKL 344 K++D+ E++ +++ Sbjct: 218 EFVSQWELVTKINDLLEDLPPRQREI 243 >UniRef50_A6FX97 RNA polymerase sigma factor n=2 Tax=Plesiocystis pacifica SIR-1 RepID=A6FX97_9DELT Length = 421 Score = 263 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 113/417 (27%), Positives = 205/417 (49%), Gaps = 23/417 (5%) Query: 214 PELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLV----PKQFDYL 269 P + K +R + + E+ L L+ RL + Sbjct: 4 PNESSSKRRPVRKSESPLGAYLSTVSKVDVLTPEQELNLATEISDRRLTHWRALLSYTPF 63 Query: 270 VNSMRVMM-DRVRTQERL--------IMKLCVEQCKMPK-KNFITLFTGNETSDTWFNAA 319 ++ ++ D++R E ++L + + K F + + AA Sbjct: 64 AAAIADVVEDKLREGEVEGLPVAAFSELRLASRAYRDRETKANREAFEHAQQAVAEAMAA 123 Query: 320 IAMNKPWSEKLHDVSEEVHRALQKLQQIE-EETGLTIEQVKDINRRMSIGEAKARRAKKE 378 + ++ +S+ + E + ++ +E +++ R +K + Sbjct: 124 LDLDGNYSDCVAADLEAIDAHRREGVALEVSYPPKGSRPFARYVQKVRSSGHALRWSKNK 183 Query: 379 MVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQA 438 V+ANLRLV++IA+++ + + DL+QEGN+GLMKAVD+F+ RGY+FSTYATWWIR A Sbjct: 184 FVKANLRLVVTIARRFDHGLMPLQDLVQEGNLGLMKAVDRFDPTRGYRFSTYATWWIRHA 243 Query: 439 ITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVL 498 I R++A++ RT+R+P H+ + +L R++R++ + G PTPE+LA+ + + ++RK+ Sbjct: 244 INRALANKGRTVRLPAHVSADLQRLRRVTRELEAKTGETPTPEQLAQAAGLSKTRVRKLS 303 Query: 499 KIAKEP-ISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAK 557 K+ +P +S++ P DD+ L D +ED ++ + D ++L D L L E Sbjct: 304 KLTLDPTVSLDAPSHDDDARGLLDRLEDASVPVAADILEHQALNEHLRDALYNLQPIELD 363 Query: 558 VLRMRFGID-------MNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVL 607 +L+ R+GI TL ++G++ ++RERIRQ++ +AL KLR L Sbjct: 364 ILKRRYGIATSEAESVDFEPMTLRQLGERHSLSRERIRQLQERALTKLRREFARREL 420 >UniRef50_A6CZ07 RNA polymerase sigma factor n=1 Tax=Vibrio shilonii AK1 RepID=A6CZ07_9VIBR Length = 296 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 102/263 (38%), Positives = 160/263 (60%), Gaps = 2/263 (0%) Query: 347 IEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQ 406 +E G + +D A A++ ++ +NLRLVI AK+Y+NRGL F DLI Sbjct: 28 FKEVAGHDLLSAEDERHIARKARAGDTLARQHLINSNLRLVIRTAKRYSNRGLDFYDLIN 87 Query: 407 EGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRI 466 EGNIGL++AVDKF+ GY+FSTYA WWI+QAI R+I +Q RTIR+PVH+ + I + ++ Sbjct: 88 EGNIGLIQAVDKFDPELGYRFSTYAVWWIQQAIDRAIMNQGRTIRVPVHVTKQIRECSKA 147 Query: 467 SRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDED--SHLGDFIE 524 + ++ +E EPT E+AER +++ K+LK++++ +S++ ++ D HL + Sbjct: 148 AHELRKEGNHEPTSSEIAERTGRAPEEVSKLLKLSEQSLSLDNGWDEEGDKKDHLQTIDD 207 Query: 525 DTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTR 584 D ELP T++L A D++ L ++ +L RFG+ + TLE+VG+ VTR Sbjct: 208 DDVFELPEQDIVTQNLNKALIDLVDSLPDKQRVILHHRFGLLDDDPKTLEQVGEIVGVTR 267 Query: 585 ERIRQIEAKALRKLRHPSRSEVL 607 ER+RQI+ A+ LR + + L Sbjct: 268 ERVRQIQKSAMETLRDKLKRQNL 290 >UniRef50_C1A692 RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A692_GEMAT Length = 295 Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats. Identities = 98/292 (33%), Positives = 159/292 (54%), Gaps = 3/292 (1%) Query: 319 AIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKE 378 + + E Q L ++ L + ++ +++ G+ A +E Sbjct: 5 KRKRRRAAPAGIAPSEPERDILDQYLYEVSTYPLLKAAEEIELAKKIRAGDQD---ALQE 61 Query: 379 MVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQA 438 +V+ NLR VIS+AKKY NRGL +DLI EGN+GL+ A KF+ +G KF +YA WWIRQA Sbjct: 62 LVKRNLRFVISVAKKYQNRGLPLIDLIGEGNVGLLTAARKFDPDQGVKFISYAVWWIRQA 121 Query: 439 ITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVL 498 I S+A Q RT+R+P++ ++++ + S + Q++ REP+PEELA+ + D ++ + Sbjct: 122 ILSSLARQGRTVRVPLNRTADLSRIIKASEILRQKLRREPSPEELAQVTGLSVDVVQSLA 181 Query: 499 KIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKV 558 + + ++ P+ D D L + + + A L L+ L R+AKV Sbjct: 182 ALNTGDVRLDAPMDPDGDRSLIERFVADEMPDTEEEAMNRFLTDEIEQALSTLPPRDAKV 241 Query: 559 LRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSF 610 LR+ FG++ ++TLEE+G VTRER+RQ+ +AL++LR L SF Sbjct: 242 LRLYFGLEGGREHTLEEIGSMLGVTRERVRQLRDRALKRLREGDVGRALSSF 293 Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 2/88 (2%) Query: 75 DAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSV 134 + + + + D + Y+ E+ T LL EI++AK+I G + Sbjct: 3 EVKRKRRRAAPAGIAPSEPERDILDQYLYEVSTYPLLKAAEEIELAKKIRAGDQDALQEL 62 Query: 135 AEYPEAITYLLEQYDRVEAEEARLSDLI 162 + + +++ + + L DLI Sbjct: 63 VK--RNLRFVISVAKKYQNRGLPLIDLI 88 >UniRef50_P35540 RNA polymerase sigma factor rpoS n=502 Tax=Proteobacteria RepID=RPOS_SHIFL Length = 330 Score = 262 bits (669), Expect = 4e-68, Method: Composition-based stats. Identities = 106/310 (34%), Positives = 175/310 (56%), Gaps = 6/310 (1%) Query: 301 NFITLFTGNETSDTWFNAAIAMNKPWSEKLH---DVSEEVHRALQKLQQIEEETGLTIEQ 357 F + N E+L + L +I LT E Sbjct: 16 EFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAE- 74 Query: 358 VKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD 417 + +++ M+E+NLRLV+ IA++Y NRGL LDLI+EGN+GL++AV+ Sbjct: 75 --EEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVE 132 Query: 418 KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE 477 KF+ RG++FSTYATWWIRQ I R+I +Q RTIR+P+H+++ +N R +R++ ++ E Sbjct: 133 KFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHE 192 Query: 478 PTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATT 537 P+ EE+AE++ P D + ++L++ + S++TP+G D + L D + D P D+ Sbjct: 193 PSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQD 252 Query: 538 ESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRK 597 + ++ + L L A++ +VL RFG+ TLE+VG++ +TRER+RQI+ + LR+ Sbjct: 253 DDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRR 312 Query: 598 LRHPSRSEVL 607 LR +++ L Sbjct: 313 LREILQTQGL 322 Score = 58.9 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 47/118 (39%), Gaps = 11/118 (9%) Query: 46 QMINDMGIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREM 105 ++ G++V +E ++ + A+E+ A R D ++Y+ E+ Sbjct: 15 AEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGA---------TQRVLDATQLYLGEI 65 Query: 106 GTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLIT 163 G LLT E E+ A+R G + + E + +++ R L DLI Sbjct: 66 GYSPLLTAEEEVYFARRALRGDVASRRRMIES--NLRLVVKIARRYGNRGLALLDLIE 121 >UniRef50_Q2S172 RNA polymerase sigma-70 factor n=91 Tax=Bacteroidetes/Chlorobi group RepID=Q2S172_SALRD Length = 313 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 108/278 (38%), Positives = 171/278 (61%), Gaps = 1/278 (0%) Query: 336 EVHRALQKLQQIEEETG-LTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKY 394 +V R + L Q +E G + + + ++ E A ++ ANLR V+S+AKKY Sbjct: 36 QVSREQRMLDQYLQEIGKIDLLEPEEEVELARRIEDGDEEALHKLCRANLRFVVSVAKKY 95 Query: 395 TNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPV 454 +GL DLI EGN GL+KA +F+ RG+KF +YA WWIRQAI +++A+Q+R +R+P+ Sbjct: 96 QGQGLSLADLINEGNYGLIKAAKRFDETRGFKFISYAVWWIRQAILQALAEQSRVVRLPL 155 Query: 455 HMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDD 514 + I TI+K+ + S ++ Q++ R+P EELAE + + K+R+ +K +SM+ P ++ Sbjct: 156 NRIGTISKIRKASARLQQDLDRKPNIEELAEELEIDVQKVREAMKHTSRHLSMDAPFNEE 215 Query: 515 EDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLE 574 +D+ L D + D + P + +ES++ L+ L REA++ R+ FGI TLE Sbjct: 216 DDNSLLDVLPDEDNDSPDEEMLSESVKIDIERALSALHDREAEITRLYFGIGREHPLTLE 275 Query: 575 EVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 E+GK+FD+TRER+RQI+ KALRKLR + L+ D Sbjct: 276 EIGKRFDLTRERVRQIKEKALRKLRQRHSKQDLQPHTD 313 >UniRef50_Q3JAH2 RNA polymerase sigma factor n=2 Tax=Nitrosococcus oceani RepID=Q3JAH2_NITOC Length = 303 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 93/263 (35%), Positives = 160/263 (60%), Gaps = 4/263 (1%) Query: 343 KLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL 402 +++ + L+ E+ + R G+ + A+ ++E+NLR+VI +A ++ NRGL + Sbjct: 42 YMREAGKVPLLSAEEERHYARLAQQGDRE---ARNHIIESNLRIVIRMATRHINRGLPLM 98 Query: 403 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 462 DLI+EGN+GL+ AV+KF G++FSTYA+WWIRQAI R++ +Q RTIR+P+H+ + I Sbjct: 99 DLIEEGNLGLIDAVEKFNPELGFRFSTYASWWIRQAIERALMNQTRTIRVPIHVFKKIRC 158 Query: 463 LNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDF 522 + +R Q EP E+A+ + P ++I++ L + IS++ P+ +D D L D Sbjct: 159 YQKEARYFRQRYNIEPHLGEIAKLLHEPLERIQRYLSLQAPEISLDDPLSEDTDDCLVDL 218 Query: 523 IEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDV 582 + D P +A+ H+ L+ L R+ ++++ R+G+D TLEE+G++ + Sbjct: 219 LPDER-NNPAILWEIFDKKASIHNQLSQLPERQQEIIKCRYGLDGYEVTTLEEIGQKLGI 277 Query: 583 TRERIRQIEAKALRKLRHPSRSE 605 TRER+RQI+ A+++LR SE Sbjct: 278 TRERVRQIQQTAIKRLRKIIESE 300 Score = 48.9 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Query: 100 MYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLS 159 +YMRE G V LL+ E E A+ + G + + + E + ++ R L Sbjct: 41 LYMREAGKVPLLSAEEERHYARLAQQGDREARNHIIES--NLRIVIRMATRHINRGLPLM 98 Query: 160 DLIT 163 DLI Sbjct: 99 DLIE 102 >UniRef50_B4U904 RNA polymerase sigma factor n=5 Tax=Aquificales RepID=B4U904_HYDS0 Length = 311 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 94/309 (30%), Positives = 167/309 (54%), Gaps = 35/309 (11%) Query: 336 EVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYT 395 E Q ++++ LT ++ K+ +R G+ + A K +VEANLR V+S+AK+Y Sbjct: 6 EQEIINQYMKRVSSVKLLTPQEEKEFAKRAKAGDKE---ALKALVEANLRFVVSVAKQYM 62 Query: 396 NRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVH 455 G+ +LI GN+GL++A +F+ + KF +YA WW+RQAI ++++ Q +RIPV Sbjct: 63 GYGIPLSELIAAGNLGLLEAATRFDPDKNVKFISYAVWWVRQAIMQALSQQTGAVRIPVK 122 Query: 456 MIETINKLNRISRQMLQEMGREPTPEELAERML--------------------------- 488 I+ + ++L+E+ REPT +E+A+ + Sbjct: 123 HSHLISAVGLAYNELLKELEREPTYKEIADYINKKNIIREFKKETGFAPTEEELEQSMTQ 182 Query: 489 -----MPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAA 543 + E+ ++K L+I K P+S++TP+GD+ D+ D + + + + + L Sbjct: 183 EHKYTVTEEDVKKCLQICKTPLSLDTPVGDNPDTLFVDLLSISDTDEIEEGVIKDVLEKE 242 Query: 544 THDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 603 HD+++ L +E KVL +R+G++ N TL E+G ++RER+RQ+E +A++KLR + Sbjct: 243 LHDIISKLPEKERKVLELRYGLNGNEPLTLREIGDALGISRERVRQLETRAIKKLRSFAL 302 Query: 604 SEVLRSFLD 612 L+ FL Sbjct: 303 KRHLKDFLS 311 Score = 44.2 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 34/74 (45%), Gaps = 2/74 (2%) Query: 91 IGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDR 150 + + YM+ + +V+LLT + E + AKR + G + ++ E + +++ + Sbjct: 3 SDSEQEIINQYMKRVSSVKLLTPQEEKEFAKRAKAGDKEALKALVEA--NLRFVVSVAKQ 60 Query: 151 VEAEEARLSDLITG 164 LS+LI Sbjct: 61 YMGYGIPLSELIAA 74 >UniRef50_Q56VT3 RNA polymerase sigma factor (Fragment) n=1 Tax=Hydrogenothermus marinus RepID=Q56VT3_9AQUI Length = 369 Score = 259 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 149/369 (40%), Positives = 208/369 (56%), Gaps = 30/369 (8%) Query: 96 DPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEE 155 DPVRMY+REMG ELLTREGEI+IAKRIEDG + ++A P I ++LE +++E ++ Sbjct: 1 DPVRMYLREMGHSELLTREGEIEIAKRIEDGQRSMVQAIAACPPTIAFMLETVEKIENDK 60 Query: 156 ARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDE--------------------- 194 R+ +++ G +D N ++ + PT S +D D+ Sbjct: 61 LRVDEVVDGLID-NLDDIVPPTTDEEDDAESLDDDIDEALDESDDDATDDSDDTFDDVSD 119 Query: 195 --------DEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQ 246 +E +E+ ++ + + FA++R Y + G + Q Sbjct: 120 EDEEEEEEEETKEERAARIQAENLATLKKGTLAHFAKIREWYQALDAALTQGGTQNPEYQ 179 Query: 247 EEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLF 306 + ++ R + + + + +R +++VR ER I LC + MP+ +F+ F Sbjct: 180 KLRDLIAHELLHIRFTARYIEQVCDIVRGFIEQVRQHERQIQNLCTQIGTMPRDHFLKTF 239 Query: 307 TGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMS 366 NET+ W I PWSE L V V Q++ +I E + ++++KDI +RMS Sbjct: 240 PPNETNLDWIKNEIEAGHPWSESLVRVFPSVLDEQQRIIEIVERARVPLDELKDIFKRMS 299 Query: 367 IGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYK 426 GEAK R AK+EMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYK Sbjct: 300 QGEAKMRAAKREMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYK 359 Query: 427 FSTYATWWI 435 FSTYATWWI Sbjct: 360 FSTYATWWI 368 >UniRef50_A9ALE2 RNA polymerase sigma factor n=19 Tax=Burkholderia RepID=A9ALE2_BURM1 Length = 525 Score = 259 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 110/225 (48%), Positives = 152/225 (67%), Gaps = 1/225 (0%) Query: 368 GEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKF 427 G+ K R A + M+EANLRLV+SIA+KY NRG+ DL+Q+G IGLM+A++KFEYRRG+KF Sbjct: 281 GQQKVRDATRAMLEANLRLVLSIARKYLNRGVDLSDLVQDGCIGLMRAIEKFEYRRGFKF 340 Query: 428 STYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERM 487 STYATWWIRQAI R++AD+ARTIR+PVH+ + ++ R + + Q GR+PTP ELA Sbjct: 341 STYATWWIRQAIARAVADRARTIRVPVHVGDQHQRVRRQALRFRQRTGRQPTPAELAAET 400 Query: 488 LMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDV 547 + EDK+R +L + EP+S++TP+ D D+ L D IED T P + +R + Sbjct: 401 GLAEDKLRAILALPAEPVSLDTPL-PDADTGLVDLIEDETSASPFEQLAGTRMRECVRSL 459 Query: 548 LAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEA 592 L +T EA VLR RFG+ T + + K ++RER+RQIE Sbjct: 460 LRSVTPTEADVLRRRFGLGGTEPDTYDAIAKDAGMSRERVRQIEK 504 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 84/415 (20%), Positives = 140/415 (33%), Gaps = 59/415 (14%) Query: 3 QNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDA 62 P + L+ EQGYLT+A++ D LP + D ++ + + D+GI V++E Sbjct: 11 DTPLDPIIQLLALASEQGYLTHADLVDALPPESDSPDALDVVRAALADIGITVLDEPAAP 70 Query: 63 DDLMLAEN-TADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAK 121 A D D E +L + +TDP+ +YMR M V LLTRE EI +A+ Sbjct: 71 PPFAAAPAVDVDRDTLEEGRALLGDLARGASASTDPLALYMRRMHAVPLLTREDEIALAR 130 Query: 122 RIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHV 181 +E G +Q+ ++A P A+ LL + A A Sbjct: 131 ELETGRHQMLHALAGCPPAVDALLARIGTTTAASAS------------------------ 166 Query: 182 GSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRS 241 D DGD D ADD N A +F +R R + A G Sbjct: 167 ---------------DRSDGDADDADDTNDSADAPAAARFDAVRDALADVRRALHAHGCR 211 Query: 242 HATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKN 301 + ++ +L+ + D + + R + C Sbjct: 212 SSAYRDARDRLAAELGALTWIASAVDDASRVVHALAAASRDDAARAIAGADAACFDAVAR 271 Query: 302 FITLFTGN--------------ETSDTWFNAAIAMNKPWSEKLHDVSEE-VHRALQKLQQ 346 + N E + + L D+ ++ ++ +++ Sbjct: 272 RALVAALNDGQQKVRDATRAMLEANLRLVLSIARKYLNRGVDLSDLVQDGCIGLMRAIEK 331 Query: 347 IEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRL----VISIAKKYTNR 397 E G R +I A A RA+ V ++ V A ++ R Sbjct: 332 FEYRRGFKFSTYATWWIRQAIARAVADRARTIRVPVHVGDQHQRVRRQALRFRQR 386 >UniRef50_C1DV14 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium azorense Az-Fu1 RepID=C1DV14_SULAA Length = 282 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 94/285 (32%), Positives = 166/285 (58%), Gaps = 5/285 (1%) Query: 330 LHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVIS 389 + + +E+ +QQ+ + LT E+ +++ R G+ + A K++VE NLR V++ Sbjct: 1 MANQDQELTTLQLYMQQMGKYPMLTPEEERELAIRAKKGDKE---ALKKLVEGNLRFVVN 57 Query: 390 IAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQART 449 IAK + G+ DLI GN+GL++A +F+ + KF +YA WWIRQAI ++I Q Sbjct: 58 IAKNFMGWGVPLTDLIAAGNLGLIEAAKRFDPDKNVKFISYAVWWIRQAIMQTIFQQTGA 117 Query: 450 IRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMET 509 +RIP+ I+K+ ++ + +GREPT EE+A+ + K++ L I ++PIS++ Sbjct: 118 VRIPIKESLFISKVKNAYEKLKESLGREPTEEEIAKELKTSVKKVKNALAIVRQPISLDM 177 Query: 510 PIGD--DEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDM 567 P+G+ +ED L D + E +L+ +L L RE +++++R+G++ Sbjct: 178 PLGEGGEEDFTLLDILSKKGTEDVEKDLVESTLKEEFERLLNVLDEREREIIKLRYGLEG 237 Query: 568 NTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 TLEEVG+ ++RER+RQ+E +AL+KL+ + + L++FL Sbjct: 238 LEPKTLEEVGEMLGISRERVRQLEQRALKKLKAVALKKHLQNFLS 282 Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 32/273 (11%), Positives = 92/273 (33%), Gaps = 10/273 (3%) Query: 98 VRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEAR 157 +++YM++MG +LT E E ++A R + G + + E + +++ Sbjct: 11 LQLYMQQMGKYPMLTPEEERELAIRAKKGDKEALKKLVE--GNLRFVVNIAKNFMGWGVP 68 Query: 158 LSDLIT----GFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSID 213 L+DLI G ++ D + + + ++ G ++ Sbjct: 69 LTDLIAAGNLGLIEAAKRFDPDKNVKFISYAVWWIRQAIMQTIFQQTGAVRIPIKESLFI 128 Query: 214 PELAREKFAELRAQ-YVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNS 272 ++ + T + I + ++ + L + + + + Sbjct: 129 SKVKNAYEKLKESLGREPTEEEIAKELKTSVKKVKNALAIVRQPISLDMPLGEGGEEDFT 188 Query: 273 MRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHD 332 + ++ + + E + L K + + + +E + + L + Sbjct: 189 LLDILSK-KGTEDVEKDLVESTLKEEFERLLNVL--DEREREIIKLRYGLEGLEPKTLEE 245 Query: 333 VSEEVHRALQKLQQIEEETGLTIEQVKDINRRM 365 V E + + ++++Q+E+ ++ V Sbjct: 246 VGEMLGISRERVRQLEQRALKKLKAVALKKHLQ 278 >UniRef50_C4V1Y7 RNA polymerase sigma factor n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V1Y7_9FIRM Length = 352 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 106/256 (41%), Positives = 155/256 (60%), Gaps = 9/256 (3%) Query: 364 RMSIGEAKARRAKKEMVEANLRLVISIA----KKYTNRGLQFLDLIQEGNIGLMKAVDKF 419 ++ + +A++++ N +LV A K+Y +R L F D+ Q G IGL+ A KF Sbjct: 99 LCAMIQQGNLQAEQDLCVKNKKLVDKYALGYEKRYRHR-LDFDDIEQAGFIGLITAAKKF 157 Query: 420 EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPT 479 + GY FSTYA WWI+QAITR I D IRIPVHM+E I K+ + M E+ RE Sbjct: 158 DISMGYSFSTYAVWWIKQAITREIMDHGFVIRIPVHMMEQIIKVAGV-ENMFSELNREER 216 Query: 480 PEELAERMLMPEDKIRKVLKIAKEPI---SMETPIGDDEDSHLGDFIEDTTLELPLDSAT 536 ++ + E+++R+ + + + + S+ +G+DE LG+F+ D + Sbjct: 217 IVKVMDETGYKEERVRECMMLKEYVLTYSSLNVTVGEDETVELGEFLSDDGAISIEEMIE 276 Query: 537 TESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALR 596 + LR DVL LT +E KV+++RFG++ N +TLEEVGK F+VTRERIRQIE+KALR Sbjct: 277 NKELRRMLDDVLNTLTEKEKKVIKLRFGLEDNRQWTLEEVGKLFNVTRERIRQIESKALR 336 Query: 597 KLRHPSRSEVLRSFLD 612 KLRHPSR ++SFL+ Sbjct: 337 KLRHPSRLHNIKSFLE 352 >UniRef50_A8Z659 RNA polymerase sigma factor rpoD n=5 Tax=Flavobacteriales RepID=A8Z659_SULMW Length = 351 Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats. Identities = 83/238 (34%), Positives = 147/238 (61%), Gaps = 1/238 (0%) Query: 374 RAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW 433 A +V+ANLR VISIAK+Y N+GL DLI EGN GL+K +++F+ R+G+K +Y W Sbjct: 113 YALDNLVKANLRFVISIAKQYQNQGLSLSDLINEGNFGLIKGINRFDERKGFKCISYCVW 172 Query: 434 WIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDK 493 WIRQ+I ++I+D+AR +R P + + NK+N+ ++ Q++ P+ + +++ + + E Sbjct: 173 WIRQSILQAISDKARCVRYPTNKLAFYNKVNKTYSKLEQKLKMPPSIKYISDYLNVSEKD 232 Query: 494 IRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTA 553 + + L + + S++ P+G+ ++S+L D I+ S ESL+ +L L+ Sbjct: 233 VEEALINSIKHTSLDAPLGEGDNSNLYDVIKIDESPKTDHSLEKESLQQDIKILLETLSE 292 Query: 554 REAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 RE++++ + +G+ LE++ +TRER RQIE A+++L+ SR E+L S+L Sbjct: 293 RESQIITLHYGLGCF-SMNLEKIAYLLKLTRERCRQIEMHAIKRLKKSSRKEILLSYL 349 >UniRef50_C5RI15 RNA polymerase sigma factor n=1 Tax=Clostridium cellulovorans 743B RepID=C5RI15_CLOCL Length = 427 Score = 258 bits (658), Expect = 7e-67, Method: Composition-based stats. Identities = 129/411 (31%), Positives = 192/411 (46%), Gaps = 24/411 (5%) Query: 218 REKFAELRAQYVVTRDTIKAKGRSHATAQEEI--------LKLSEVFKQFRLVPKQFDYL 269 EK EL +Y V+ +++ + EI K+S +FK + + Sbjct: 24 IEKVEELFKKYRVSDSEMESVFTELNSLNIEIVHSKGAFNEKISRLFKYIGPNKELRETK 83 Query: 270 VNSMRVMMDRVRTQERLIMK-LCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSE 328 +N R ++ I L + + + + + FN ++ Sbjct: 84 LNKWFETEKIDRDMQKRIRHSLNISGYTIINEVHRDINFEDFDFLDEFNFEELDVVLDND 143 Query: 329 KLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVI 388 +D ++ + K +E L K +A +V AN +LV Sbjct: 144 SFNDEVSKLKNVVDKSHNLEYLVDL---------HSSKEDFRKREQALDNLVNANKKLVW 194 Query: 389 SIAKKYTNRG-LQFL--DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIAD 445 IA +Y + F D+ Q G +GLMKA +KF+ +G +FSTYATWW+RQ+ITRSIAD Sbjct: 195 EIALRYKQFSTVSFDNSDMYQAGVLGLMKAAEKFDISKGNQFSTYATWWVRQSITRSIAD 254 Query: 446 QARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKI--RKVLKIAKE 503 + TIRIPVHM E I K + E GR + EELA + + +++ +V + Sbjct: 255 YSTTIRIPVHMREKIIKYVSTENKFWNENGRVASKEELANLLGISSEEVNYLQVYQDVAN 314 Query: 504 PISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLA-GLTAREAKVLRMR 562 S++ PIG DE S LG+FI D P SA L+ ++ LT +E ++L R Sbjct: 315 LTSLDIPIGADEGSFLGEFIPDDKHRSPEKSAEEGELKRELKEICEGRLTPKETRILNFR 374 Query: 563 FGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 FG +TLEE+G +VTRERIRQIEAKA+ KL++P E LR F D Sbjct: 375 FGFIDGRTHTLEEIGHVENVTRERIRQIEAKAISKLQNPKILERLRDFYYD 425 >UniRef50_C0QYD2 RNA polymerase sigma factor n=2 Tax=Brachyspira RepID=C0QYD2_BRAHW Length = 309 Score = 257 bits (657), Expect = 8e-67, Method: Composition-based stats. Identities = 94/280 (33%), Positives = 167/280 (59%) Query: 334 SEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKK 393 EE+ + + L ++ +++ + + + ++V++NLRLVISIAK+ Sbjct: 30 EEELDLWQRLEVCRNDRALLENNDDEESLKKIEEIDKEIDSIQHKLVKSNLRLVISIAKR 89 Query: 394 YTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIP 453 Y N G+ F+D+I EGNIGL++AV +FEY++G+KFSTY WWI+Q+I + I+ + IR P Sbjct: 90 YYNSGVPFIDIIDEGNIGLIEAVKRFEYKKGFKFSTYGVWWIKQSIVKEISSKRHIIRFP 149 Query: 454 VHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGD 513 +H+ I K + S+ + Q++GR+PT +E+++ M + + ++ ++ S+++ + Sbjct: 150 MHIARLIKKSIQTSKTLTQKLGRDPTIDEISKEMKIDRKTLSYIMIFTQDTASVDSFFRN 209 Query: 514 DEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTL 573 +++ + IED P A +SLR + L L +E V+ R+G+ TL Sbjct: 210 SDNNDMTSIIEDKNFPSPHQKAFMDSLRDTLTEALKCLDEKERTVIISRYGLYGKEAKTL 269 Query: 574 EEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 E+ GK+ ++TRER+RQI+ KA++KL + S+ L+SFL D Sbjct: 270 EDTGKELNITRERVRQIQIKAIKKLAGLNLSKELKSFLWD 309 >UniRef50_Q2JMC5 RNA polymerase sigma factor n=2 Tax=Synechococcus RepID=Q2JMC5_SYNJB Length = 319 Score = 257 bits (657), Expect = 8e-67, Method: Composition-based stats. Identities = 101/280 (36%), Positives = 160/280 (57%), Gaps = 3/280 (1%) Query: 314 TWFNAAIAMNKPWSEKLHDVSEEVHRA--LQKLQQIEEETGLTIEQVKDINRRMSIGEAK 371 + + +E+ ++ +V R L + +Q E +++ + + Sbjct: 13 RFLKTIGRYSLLTAEEELRLAHQVQRMVTLLEQRQPHESVEGWSQRLGIPLAELQQILRQ 72 Query: 372 ARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYA 431 AKK MVE NLRLV+SIAK+Y NRGL FLDLIQEG IGL +AV+KF+ RGYKFSTYA Sbjct: 73 GEAAKKRMVECNLRLVVSIAKRYRNRGLPFLDLIQEGTIGLTRAVEKFDPTRGYKFSTYA 132 Query: 432 TWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPE 491 TWWIRQ++ R I ++ R IR+P HM E ++++ R R++ E G P EE+ + + + + Sbjct: 133 TWWIRQSVNRGIQNKGRMIRLPAHMYEKVSQVKRRYRELSAERGSRPQAEEVFDSLDIGD 192 Query: 492 DKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGL 551 + + + E S+ +GD++ + L FI D P++ T + R ++ L Sbjct: 193 NYRELITRHMAEMRSLNVGVGDEDGTELQHFIPDED-NDPVEHLTQLARREEVRALVGQL 251 Query: 552 TAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIE 591 + RE +V+ R+G+D + TL E+G+ ++RER+RQIE Sbjct: 252 SERERQVIVARYGLDGSRGLTLREIGEHIGLSRERVRQIE 291 >UniRef50_D0Z2H8 RNA polymerase sigma factor n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0Z2H8_LISDA Length = 294 Score = 257 bits (657), Expect = 9e-67, Method: Composition-based stats. Identities = 98/268 (36%), Positives = 155/268 (57%), Gaps = 5/268 (1%) Query: 341 LQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQ 400 L+ I + LT + + ++KK M+E+NLRLV+SIAKKY G+Q Sbjct: 19 QLYLKDIALKPLLTKD---EEILYSRKALVGDAKSKKVMIESNLRLVVSIAKKYRGSGMQ 75 Query: 401 FLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI 460 D+I EGNIGL+ AV+KF+ RG++FSTYATWWI+Q I R+I +QARTIR+PVH+ + I Sbjct: 76 LSDMIDEGNIGLITAVEKFDPERGFRFSTYATWWIKQTIERAIHNQARTIRLPVHVSKEI 135 Query: 461 NKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDS--H 518 N + R +Q+++ EPT EE+A+ + + I +L +S + I ++ + Sbjct: 136 NTILRTHKQLMKTNNSEPTHEEVADELDKSVEDISALLSYDAPVMSFDQTISSEDSNSQT 195 Query: 519 LGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGK 578 + FI D + P ++ T +L GL R+ ++L RFG+ TL++V + Sbjct: 196 MASFISDDSDNGPDAQIDKNDIQKLTLTMLEGLNPRDREILCRRFGLMGYEAQTLQQVAE 255 Query: 579 QFDVTRERIRQIEAKALRKLRHPSRSEV 606 + +TRERIRQ++ +L KL++ + E Sbjct: 256 EVGLTRERIRQLQVSSLNKLKNVLQREK 283 Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 30/269 (11%), Positives = 83/269 (30%), Gaps = 12/269 (4%) Query: 86 SVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLL 145 V+ D +++Y++++ LLT++ EI +++ G + + + E + ++ Sbjct: 6 KVDDTTSFDNDVIQLYLKDIALKPLLTKDEEILYSRKALVGDAKSKKVMIES--NLRLVV 63 Query: 146 EQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDS 205 + +LSD+I D + + + Sbjct: 64 SIAKKYRGSGMQLSDMI----DEGNIGLITAVEKFDPERGFRFSTYATWWIKQTIERAIH 119 Query: 206 ADDDNSIDPELAREKFAEL---RAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLV 262 P ++ + Q + T ++ + + +S + V Sbjct: 120 NQARTIRLPVHVSKEINTILRTHKQLMKTNNSEPTHEEVADELDKSVEDISALLSYDAPV 179 Query: 263 PKQFDYLVNS---MRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAA 319 + + + M + +++ + K L N Sbjct: 180 MSFDQTISSEDSNSQTMASFISDDSDNGPDAQIDKNDIQKLTLTMLEGLNPRDREILCRR 239 Query: 320 IAMNKPWSEKLHDVSEEVHRALQKLQQIE 348 + ++ L V+EEV ++++Q++ Sbjct: 240 FGLMGYEAQTLQQVAEEVGLTRERIRQLQ 268 >UniRef50_B2VA41 RNA polymerase sigma factor n=2 Tax=Hydrogenothermaceae RepID=B2VA41_SULSY Length = 281 Score = 257 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 100/284 (35%), Positives = 164/284 (57%), Gaps = 5/284 (1%) Query: 331 HDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISI 390 +E+ +QQ+ + L+ E+ K++ R G+ + A K++VE NLR V+SI Sbjct: 1 MAEQDELTTLQLYMQQMGKHPMLSPEEEKELAIRAKQGDKE---ALKKLVEGNLRFVVSI 57 Query: 391 AKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTI 450 AK + G+ DLI GN+GL++A +F+ + KF +YA WWIRQAI ++I Q + Sbjct: 58 AKNFMGWGVPLTDLIAAGNLGLIEAAKRFDPDKNVKFISYAVWWIRQAIMQTIFQQTGAV 117 Query: 451 RIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETP 510 RIPV I K+ ++ +E+GREPT EE+A+R+ K++ L I + PIS++ P Sbjct: 118 RIPVKESLFIAKVKETYEKLKEELGREPTEEEIAKRLNTSVKKVKNALSIVRLPISLDMP 177 Query: 511 IGD--DEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMN 568 +G+ +ED L D + E E++ +L L RE ++++MR+G+D Sbjct: 178 LGEGGEEDFTLLDVLSKKGTEDIEKELIEETIHKELESMLDVLDEREKEIIKMRYGLDGE 237 Query: 569 TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 TLEEVG++ ++RER+RQ+E +AL+KL+ + + L+ FL Sbjct: 238 EPKTLEEVGEKLGISRERVRQLEQRALKKLKAVALKKHLKDFLS 281 Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 35/256 (13%), Positives = 95/256 (37%), Gaps = 8/256 (3%) Query: 98 VRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEAR 157 +++YM++MG +L+ E E ++A R + G + + E + +++ Sbjct: 10 LQLYMQQMGKHPMLSPEEEKELAIRAKQGDKEALKKLVE--GNLRFVVSIAKNFMGWGVP 67 Query: 158 LSDLIT----GFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSID 213 L+DLI G ++ D + + + ++ G S+ Sbjct: 68 LTDLIAAGNLGLIEAAKRFDPDKNVKFISYAVWWIRQAIMQTIFQQTG-AVRIPVKESLF 126 Query: 214 PELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSM 273 +E + +L+ + + R + + ++ LS V L + Sbjct: 127 IAKVKETYEKLKEELGREPTEEEIAKRLNTSVKKVKNALSIVRLPISLDMPLGEGGEEDF 186 Query: 274 RVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDV 333 ++D + + ++ + + + K+ L +E ++ + L +V Sbjct: 187 -TLLDVLSKKGTEDIEKELIEETIHKELESMLDVLDEREKEIIKMRYGLDGEEPKTLEEV 245 Query: 334 SEEVHRALQKLQQIEE 349 E++ + ++++Q+E+ Sbjct: 246 GEKLGISRERVRQLEQ 261 >UniRef50_Q4A5V6 RNA polymerase sigma factor n=3 Tax=Mycoplasma RepID=Q4A5V6_MYCS5 Length = 798 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 117/314 (37%), Positives = 182/314 (57%), Gaps = 19/314 (6%) Query: 311 TSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEA 370 + S KL + ++ V ++ + + + LT ++ KD+ M G + Sbjct: 476 DEIDLQIDEENKKQDLSNKLTETTDIVKWYMRWIGKYGK--LLTPQEEKDLAEEMDKGGS 533 Query: 371 KARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY 430 + +RA+ +++ NLRLV++ AKKY NRGL F+DL+ EGN GL+KA KF+ ++G+KFSTY Sbjct: 534 RGKRARDLIIKRNLRLVVNAAKKYKNRGLSFIDLVSEGNAGLLKAAQKFDIKKGFKFSTY 593 Query: 431 ATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMP 490 ATWWIRQ+I+R++ADQAR IR+PVHM+ETINK+ +I R++ QE G E EE+A R+ Sbjct: 594 ATWWIRQSISRAVADQARIIRVPVHMVETINKIYKIEREIQQENGGEIIDEEIAARLGGK 653 Query: 491 EDK-----IRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATH 545 K IR + KI PIS++ +G + DS GDF++D ++ P++ A E L + Sbjct: 654 SKKYDASYIRYIRKINTSPISLDKQVGKENDSFFGDFVKDESIISPVEFADKEELITKIN 713 Query: 546 DVLAG-LTAREAKVLRMRFGIDMN------TDYTLEEVGKQF-----DVTRERIRQIEAK 593 + L+ EA +++ GI + TL+E+ K F +++ER+RQI K Sbjct: 714 YYVEKLLSEAEADLIKRYHGIGYDAKGNPVRSATLDEISKDFRGEGKKISKERVRQIITK 773 Query: 594 ALRKLRHPSRSEVL 607 +KLR L Sbjct: 774 IYKKLRGYPEVVEL 787 Score = 43.1 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 43/96 (44%), Gaps = 2/96 (2%) Query: 70 NTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTV-ELLTREGEIDIAKRIEDGIN 128 + + D + +++ TTD V+ YMR +G +LLT + E D+A+ ++ G + Sbjct: 474 SPDEIDLQIDEENKKQDLSNKLTETTDIVKWYMRWIGKYGKLLTPQEEKDLAEEMDKGGS 533 Query: 129 QVQCSV-AEYPEAITYLLEQYDRVEAEEARLSDLIT 163 + + + + ++ + + DL++ Sbjct: 534 RGKRARDLIIKRNLRLVVNAAKKYKNRGLSFIDLVS 569 >UniRef50_Q21TX3 RNA polymerase sigma factor n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21TX3_RHOFD Length = 726 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 119/447 (26%), Positives = 193/447 (43%), Gaps = 13/447 (2%) Query: 170 AEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYV 229 A E V L+ D + D + + + + Sbjct: 159 APEMTPDEEDTVTEALAFIDNLAERRNDPLRIYQKEFQNATLLTADEEVALGQGMERGVQ 218 Query: 230 VTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMK 289 D + + + + K R + + + + + + ++ Sbjct: 219 QALDALAVWPSGIGAVLDAVHMVKSEAKPLRWLSSGPRAELQDIEISSNAEPAADSVLSV 278 Query: 290 LCVEQCKMPKKNFITLFTGNETSDTWFNA-------AIAMNKPWSEKLHDVSEEVHRALQ 342 + F + + + S+ + + + Sbjct: 279 EGIGTDDESDSQFGHDAHESTDELSELLSNAELLSGLDFDGALSSDGWNSRRKALASLGL 338 Query: 343 KLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL 402 + E +V++ S R+A+ +MV ANL+LV+ IAKKY G Sbjct: 339 SRGFLLELADFEQLEVQESAIEFSQAMQAYRQARDQMVIANLKLVLFIAKKYLYSGQPLD 398 Query: 403 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 462 DL+QEGNIGL+KAVD++++RRG+K STYATWWIRQ + R +AD+++TIR+PVH+ + Sbjct: 399 DLLQEGNIGLIKAVDRYDWRRGFKLSTYATWWIRQQVGRYVADKSKTIRLPVHVYVKTQQ 458 Query: 463 LNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDF 522 + + + GR PT EE+A++M MP K+ + EP+ PI D + L Sbjct: 459 IAHAAHAIELATGRMPTIEEIAKKMEMPASKVAPLALAIPEPL----PIHDVDVDSLIAI 514 Query: 523 IEDTT--LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQF 580 P+D + L + LA L ++ +VLR+RFGI + TLEE+G + Sbjct: 515 DAQDNYVARDPMDIVSDSQLIGSIDRFLATLKPKDEQVLRLRFGIGAHEAMTLEEIGTRL 574 Query: 581 DVTRERIRQIEAKALRKLRHPSRSEVL 607 +VTRERIRQIEAKA+ L+HP+R E L Sbjct: 575 EVTRERIRQIEAKAICHLKHPARLERL 601 >UniRef50_D0LPW6 RNA polymerase sigma factor n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LPW6_HALO1 Length = 465 Score = 255 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 100/283 (35%), Positives = 178/283 (62%), Gaps = 4/283 (1%) Query: 329 KLHDVSEEVHRALQKLQQIEEETGLTIE-QVKDINRRMSIGEAKARRAKKEMVEANLRLV 387 L V E+++ ++ Q+ + T ++ ++ E AR A+ E V+ANLRLV Sbjct: 182 FLDAVLEDLYAMARRKSQVRNVSFSTRRADFRNYVDQVRAAEHAARNARNEFVKANLRLV 241 Query: 388 ISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA 447 +SIA+++ + + DLIQEGN+GL+KAV++++YRRG++FSTYA+WWIR AI R++AD+ Sbjct: 242 VSIARRFNHGRMSLADLIQEGNLGLIKAVERYDYRRGFRFSTYASWWIRHAIGRALADKG 301 Query: 448 RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVL-KIAKEPIS 506 R +R+PVHM++ ++L + Q+ +GR+PT EEL+E + +KI K+ + + +S Sbjct: 302 REVRLPVHMLDAHHRLLKAQHQLTNTLGRQPTSEELSEAANLSVEKIEKMRTHLLDQALS 361 Query: 507 METPIGDDEDSHLGDFIEDTTLE--LPLDSATTESLRAATHDVLAGLTAREAKVLRMRFG 564 ++ P+ D++ + + ++D E L+ ++ L L EA +LR RFG Sbjct: 362 LDRPMNDEDGRSVAEVLQDPHGEEHSALNVLAQRTMSDEVRKTLQTLRPIEADILRRRFG 421 Query: 565 IDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVL 607 +D + + TL+++G+Q++++RERIRQ++ +AL K+R R + + Sbjct: 422 LDNDEELTLKQIGEQYNLSRERIRQLQEQALTKMRVALRRKAM 464 >UniRef50_B8C8Z6 Predicted protein (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8C8Z6_THAPS Length = 338 Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats. Identities = 97/340 (28%), Positives = 173/340 (50%), Gaps = 27/340 (7%) Query: 297 MPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIE 356 +I +E + L ++ L + + T Sbjct: 1 DSISTYIKSLGQHELLYKEDEVLLGRQVRLLMGLEGKRRDLEEELLRPPTFAQWASATNH 60 Query: 357 QVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKK-----------YTNRGLQFLDLI 405 V + +++ + AK ++EANLRLVI++A++ + +QF D Sbjct: 61 TVPSLKQQIRRSQR----AKAALIEANLRLVITVARQAVKKSPFRSSSHAASSVQFQDAC 116 Query: 406 QEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNR 465 Q+G IGL +A +KF+ G++FSTYA WWI++ + +++ +Q+RT+R+P I+ IN + Sbjct: 117 QQGIIGLTRATEKFDPELGFRFSTYAIWWIQKEVAKNVNEQSRTVRVPGSAIKKINDIRI 176 Query: 466 ISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPI------------GD 513 R ++ E+GR P+ +E+AE+ + +K+ + AKE S++ I GD Sbjct: 177 QERVLMNELGRRPSDDEVAEKCGLTVEKLNFYRQSAKEVKSLDKKIDSRTGKGSAASGGD 236 Query: 514 DEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTL 573 D+ + F+ DT P + + ++ ++ L+ RE V+R+RFG+D TL Sbjct: 237 DDGKTMEIFVRDTEHPSPSELIDQQMMQQDIRRLVKTLSPREQAVIRLRFGLDDGKPQTL 296 Query: 574 EEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 ++G++F V +ERI++IEA+AL KLR PSRS V++ ++ D Sbjct: 297 GDIGEKFGVEKERIKKIEARALLKLRQPSRSSVVKCYVSD 336 >UniRef50_A8L2N7 RNA polymerase, sigma 28 subunit, FliA/WhiG family n=95 Tax=Actinomycetales RepID=A8L2N7_FRASN Length = 376 Score = 254 bits (648), Expect = 8e-66, Method: Composition-based stats. Identities = 68/237 (28%), Positives = 123/237 (51%), Gaps = 12/237 (5%) Query: 367 IGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYK 426 G+ + + ++V +L LV +A+++ NRG DL+Q IGL+K+VD+F+ RG + Sbjct: 143 EGDPERAALRDQLVRMHLPLVEYLARRFRNRGEPLDDLVQVATIGLIKSVDRFDPERGVE 202 Query: 427 FSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAER 486 FSTYAT I I R D+ IR+P + E L + + ++ Q +GR PT E+A Sbjct: 203 FSTYATPTIVGEIKRHFRDKGWAIRVPRRLQELKLSLTKATSELSQSLGRSPTVSEIARH 262 Query: 487 MLMPEDKIRKVLKI--AKEPISMETP-IGDDEDSHLGDFIEDTTLELPLDSATTESLRAA 543 + M E+++ + L+ A +S++ P GDDE + D + + +S R + Sbjct: 263 LEMSEEEVLEGLESANAYSAVSLDAPDSGDDEAPAVADTLG-----VQDESLEGVEYRES 317 Query: 544 THDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 600 +L L RE ++L +RF + T ++ + +++ + ++ A+ L +LR Sbjct: 318 LKPLLEKLPPREKRILLLRFFGN----MTQSQIANELGISQMHVSRLLARTLAQLRR 370 >UniRef50_Q8L7P7 Sigma factor SigC n=5 Tax=rosids RepID=Q8L7P7_ARATH Length = 291 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 85/294 (28%), Positives = 153/294 (52%), Gaps = 5/294 (1%) Query: 320 IAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEM 379 ++ + + ++ K+ + K + R + G + E+ Sbjct: 1 MSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYG----WYCRDEL 56 Query: 380 VEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAI 439 V++ LV+ +A+ Y G+ DLIQ G +G+++ ++F++ RGYKFSTY +WIR+++ Sbjct: 57 VKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSM 116 Query: 440 TRSIADQARTIRIPVHMIETINKLNRISRQMLQEMG-REPTPEELAERMLMPEDKIRKVL 498 + ++ AR + IP +I TIN + + + + G + EE+A+ KIR Sbjct: 117 STMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAAN 176 Query: 499 KIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKV 558 + K S++ +GD + +F DTT+E P ++ +S R HD+L GL RE +V Sbjct: 177 QCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPREKQV 236 Query: 559 LRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 + +R+G+ +LEE+GK V++E IR+IE +A+ KLR +E LR +L+ Sbjct: 237 MVLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAMAKLRDQPNAEDLRYYLN 290 >UniRef50_UPI00003842B2 COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI00003842B2 Length = 756 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 120/256 (46%), Positives = 162/256 (63%), Gaps = 7/256 (2%) Query: 354 TIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLM 413 T + RRM G ARRA++ ANL+LV+ AKK+ GL + D IQEGN+GL+ Sbjct: 506 TDPSGGEARRRMEAGLETARRARERFALANLKLVVWGAKKF--GGLTWPDRIQEGNLGLL 563 Query: 414 KAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQE 473 KAV++F++RRG KFSTYATWWI+QA+TR++AD+ RTIRIPVH E + KL R ++ Sbjct: 564 KAVERFDHRRGAKFSTYATWWIKQAVTRAVADKGRTIRIPVHAQEAMRKLRRAQNEVFAL 623 Query: 474 MGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLD 533 GRE PEE+ E +P ++R+ L +A+EP S++ E+ L + P + Sbjct: 624 TGREALPEEVGELTEIPLARVRRFLAVAEEPASLDV-----EEVGLHAAEMASREPDPEE 678 Query: 534 SATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAK 593 ++A L L REA V+R+RFGI +YTLEE+G+QF VTRERIRQIEAK Sbjct: 679 RLAVAEIKAMVRGQLELLPPREATVIRLRFGIGCEREYTLEEIGQQFGVTRERIRQIEAK 738 Query: 594 ALRKLRHPSRSEVLRS 609 ALRKL HP R + L+ Sbjct: 739 ALRKLSHPGRIKALQG 754 Score = 72.0 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 42/171 (24%), Positives = 77/171 (45%), Gaps = 12/171 (7%) Query: 1 MEQNPQSQLKLLV----TRGKEQG-YLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQV 55 ++ + ++ L+ LV G+ +G +L D D+ D D + ++ M+ DMG+ V Sbjct: 252 LDGDEEAALRELVLVAVADGRIRGEFLALVAPRDQDDPDVPDPDCLANLRVMLGDMGVVV 311 Query: 56 MEEA--PDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVE--LL 111 ++ PD A + D+ + A+ L+ + + DP+ Y +G + L Sbjct: 312 DDDPFSPDRPSETGASDDEDDRFQDEVAEGLAFLRNLNSNRADPLTHY---IGGLPRDRL 368 Query: 112 TREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLI 162 TR+ E +A IE G +VA P A++ LL + V E D++ Sbjct: 369 TRDDEASLAMEIERGTKAALAAVAMSPAAVSELLTAVEAVIRGETPPQDVL 419 >UniRef50_D1V958 RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily n=1 Tax=Frankia sp. EuI1c RepID=D1V958_9ACTO Length = 393 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 69/237 (29%), Positives = 125/237 (52%), Gaps = 12/237 (5%) Query: 367 IGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYK 426 G+A+ + ++V +L LV +A+++ NRG DL+Q IGL+K+VD+F+ RG + Sbjct: 160 EGDAERAAIRDQLVRMHLPLVEYLARRFRNRGEPLDDLVQVATIGLIKSVDRFDPERGVE 219 Query: 427 FSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAER 486 FSTYAT I I R D+ IR+P + E L + + ++ Q++GR PT E+A Sbjct: 220 FSTYATPTIVGEIKRHFRDKGWAIRVPRRLQELKLSLTKATSELSQKLGRSPTVAEIAAH 279 Query: 487 MLMPEDKIRKVLKI--AKEPISMETP-IGDDEDSHLGDFIEDTTLELPLDSATTESLRAA 543 + M E+++ + L+ A +S++ P GDDE + D + + +S R + Sbjct: 280 LEMTEEEVLEGLESANAYSAVSLDAPDSGDDESPAVADTLG-----VQDESLEGVEYRES 334 Query: 544 THDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 600 +L L RE ++L +RF + T ++ + +++ + ++ A+ L +LR Sbjct: 335 LKPLLEKLPPREKRILLLRFFGN----MTQSQIAIELGISQMHVSRLLARTLAQLRR 387 >UniRef50_A9SW01 Plastid sigma factor SIG1 n=2 Tax=Physcomitrella patens RepID=A9SW01_PHYPA Length = 677 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 101/346 (29%), Positives = 182/346 (52%), Gaps = 15/346 (4%) Query: 275 VMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVS 334 + + + ER + ++ + + ++ T ++ L + Sbjct: 334 HPLKKYQKGER-VRRVKFDGVQDYLTTYLREITKINLLTKQEEVFLSKKLRIGLNLLEER 392 Query: 335 EEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKY 394 +++ L + EE V D+ R++ E A+ +MV ANLRLV+S+AK+Y Sbjct: 393 KKLAAELGYVPSNEEWAPHMNLSVGDLVRKLGEAE----WARDKMVMANLRLVVSVAKQY 448 Query: 395 TNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPV 454 + GL+ DLIQEG+IGL++ V+KF++ RGYK STY WWIRQ +TR+IAD +RT+R+PV Sbjct: 449 HSFGLEMADLIQEGSIGLLRGVEKFDHTRGYKLSTYVHWWIRQGVTRAIADHSRTVRLPV 508 Query: 455 HMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIG-- 512 H+ +T+ ++ + +L E G + +E++E + KI+ L++ K+ +S++ IG Sbjct: 509 HVHDTLGRIRKAKSTLLSE-GCTASVQEISEATNLTGTKIKNTLQVTKKLVSLDKEIGRN 567 Query: 513 ---DDEDSHLGDFIEDTTLEL-PLDSATTESLRAATHDVL-AGLTAREAKVLRMRFGID- 566 + L + D +E P ++ +L + L RE ++R+ +G+ Sbjct: 568 TLQSGDGETLHSLVADRDIENQPWTIVERMLMKDDVDKLLTSQLGPRERDIVRLHYGVGR 627 Query: 567 -MNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 + +LE + ++ V+RER+RQ+E A+RKL+ SR + L +L Sbjct: 628 EDGSVMSLESISYRYGVSRERVRQLETAAMRKLQIKSREQGLDRYL 673 >UniRef50_A1B3T4 RNA polymerase sigma factor n=2 Tax=Rhodobacteraceae RepID=A1B3T4_PARDP Length = 728 Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 130/526 (24%), Positives = 219/526 (41%), Gaps = 42/526 (7%) Query: 105 MGTVELLTREG--EIDIAKRIEDGINQVQCSVAEYPEAI----TYLLEQYDRVEA-EEAR 157 +G+ +T + E D K G V+ +V + + + + A Sbjct: 224 IGSSAAVTADHGAENDFLKVRNRGRQSVKRAVVQTGTRMSIDPELCFTWAEEILAKGRCS 283 Query: 158 LSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELA 217 L D+ DL ++ L + + D+ D +S D A Sbjct: 284 LDDIDRLVAHCEGNGDLEELRINLQRTLEAAGFYLTQATGHDADLWDAVSDTSSDDLADA 343 Query: 218 REKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMM 277 E R + T+ + K ++ + + ++ +L + V ++ +M Sbjct: 344 IEAALTRRTRLPGTQRFVMDKSEE----RQLLEPMMRAKQELQLGILASETAVETILDVM 399 Query: 278 DRVRTQERLIMKLCVEQCKMPKKNFITLFTGN-ETSDTWFNAAIAMNKPWSEKLHDVSEE 336 + +R R + + + I G+ ETS+ A + + ++ D Sbjct: 400 ESIRDGSR-------DPGSVSLRTIIPSRPGHAETSEVMAAADTLRSWHTTGRVMDGKRR 452 Query: 337 VHRALQKLQQ-----IEEETGLTIEQVKDINRRMSIGEAK---ARRAKKEMVEANLRLVI 388 +E T+EQ+ S EA+ + A + ++ +L V Sbjct: 453 REALAALEALDLSLAFHKELVRTLEQLPACQAEASQLEAELLLSESATEHLIREHLPYVR 512 Query: 389 SIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQAR 448 A + G D+ Q +GL ++ +F+ RGY+F YAT+W+RQAITR +D+ Sbjct: 513 RFASRNVEEGEDPEDVFQVAFMGLQRSTRRFDPERGYRFLIYATYWMRQAITRWRSDEGA 572 Query: 449 TIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKI---RKVLKIAKEPI 505 IRIPVH E I KL+R ++ +G + ELA+ + D++ R + + A+ P Sbjct: 573 AIRIPVHRNEKITKLDRALERLDVRVGGAVSDLELAKELEWTIDEVTQFRSIPREAEYPE 632 Query: 506 SMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGI 565 S++ D + + + D A TE D LA L R+A V+RMRFGI Sbjct: 633 SLDD---------WDDLLPEPSGVDVFDEAETE---RIVTDALADLPERQADVIRMRFGI 680 Query: 566 DMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 ++D TLEE+G+ + VTRERIRQIEAK L +L HP R L+ L Sbjct: 681 GRDSDMTLEEIGQIYGVTRERIRQIEAKGLDRLSHPGRKRRLQELL 726 >UniRef50_B7FPT1 Predicted protein n=2 Tax=Bacillariophyta RepID=B7FPT1_PHATR Length = 324 Score = 251 bits (642), Expect = 5e-65, Method: Composition-based stats. Identities = 102/290 (35%), Positives = 158/290 (54%), Gaps = 16/290 (5%) Query: 335 EEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKY 394 E + L +L IEE +R AK+ MV++N+RLV+SIA+KY Sbjct: 35 EGLSSKLMRLPTIEEW----AAACGGTATDFVEMVMTSREAKQRMVQSNMRLVVSIARKY 90 Query: 395 TNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPV 454 +N G+ DL+QEG++GL +A +KFE ++G+KFSTYA+WWI+QA+ RSIA +RTIR+PV Sbjct: 91 SNVGVSLQDLVQEGSLGLSRAAEKFEPKKGFKFSTYASWWIQQAVFRSIAYHSRTIRLPV 150 Query: 455 HMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETP---- 510 H+ +N++ ++ + +E+ R PT EE+AE + M K K+L++ K IS+ETP Sbjct: 151 HVHNLLNRVRKVRNNLQRELSRTPTNEEMAEELGMTLQKYNKMLRLTKRSISLETPKYQS 210 Query: 511 ----IGDDEDSHLGDFIEDTTL----ELPLDSATTESLRAATHDVLAGLTAREAKVLRMR 562 +G + LGD I ++ P H++L L E +V+ R Sbjct: 211 NPKDLGHESHDLLGDTISASSALFDESTPEKRVDRGIFHEDLHEMLEILDEDERRVICSR 270 Query: 563 FGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 +G+ T+ V Q ++ +R E +ALRKLR P + L+ D Sbjct: 271 YGLSDGLTRTVTAVASQMKQSKAWVRSQECRALRKLRRPWYEKKLKEHQD 320 >UniRef50_D2R4L7 RNA polymerase, sigma 70 subunit, RpoD subfamily n=8 Tax=Planctomycetaceae RepID=D2R4L7_9PLAN Length = 320 Score = 251 bits (640), Expect = 9e-65, Method: Composition-based stats. Identities = 98/256 (38%), Positives = 162/256 (63%), Gaps = 3/256 (1%) Query: 343 KLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL 402 L++I E L+ +++ ++ G+ + A+ MV ANLRLV++IA+ YT +GL Sbjct: 46 YLREINETALLSARDERELAAAIADGDVR---ARDRMVRANLRLVVNIARGYTGKGLSLQ 102 Query: 403 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 462 DLI+EGN+GL++AV+ F+ G +FSTYA++WI+Q+I R++ + A+TIRIP +M+E ++K Sbjct: 103 DLIEEGNLGLLRAVEGFDPAVGTRFSTYASYWIKQSIKRALINSAKTIRIPAYMVELLSK 162 Query: 463 LNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDF 522 R + ++ +E+GR PTPEE+A + + + K+ + K + S + LG+ Sbjct: 163 WRRATARLTEELGRGPTPEEVARVLGLAKKKLPIIKKAIRIYNSTPQTDQSEAGWSLGEI 222 Query: 523 IEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDV 582 + D L+ P D + + ++L + +REA VLRMRFG+ T +TL+E+G+ + Sbjct: 223 VMDERLKNPEDELVEQDVLKHVMEMLHTMDSREATVLRMRFGLGDTTPHTLKEIGESLGL 282 Query: 583 TRERIRQIEAKALRKL 598 TRER+RQIE +AL KL Sbjct: 283 TRERVRQIETEALGKL 298 Score = 41.9 bits (97), Expect = 0.081, Method: Composition-based stats. Identities = 34/275 (12%), Positives = 82/275 (29%), Gaps = 36/275 (13%) Query: 97 PVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEA 156 P+ Y+RE+ LL+ E ++A I DG + + + + ++ + Sbjct: 42 PLESYLREINETALLSARDERELAAAIADGDVRARDRMVRA--NLRLVVNIARGYTGKGL 99 Query: 157 RLSDLIT----GFVDPNAEEDLAP-------------TATHVGSELSQEDLDDDEDEDEE 199 L DLI G + D A + S + + E Sbjct: 100 SLQDLIEEGNLGLLRAVEGFDPAVGTRFSTYASYWIKQSIKRALINSAKTIRIPAYMVEL 159 Query: 200 DGDDDS------ADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEI-LKL 252 + PE + + + + I+ + T Q E L Sbjct: 160 LSKWRRATARLTEELGRGPTPEEVARVLGLAKKKLPIIKKAIRIYNSTPQTDQSEAGWSL 219 Query: 253 SEVFKQFRLVPKQFDYLVNSMRVM----MDRVRTQERLIMKLCVEQCKMPKKNFITLFTG 308 E+ RL + + + + + + ++E ++++ Sbjct: 220 GEIVMDERLKNPEDELVEQDVLKHVMEMLHTMDSREATVLRMRFGLGDTTPHTL------ 273 Query: 309 NETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQK 343 E ++ + + +E L +++ + ++ Sbjct: 274 KEIGESLGLTRERVRQIETEALGKLADGLKDPRER 308 >UniRef50_Q1Z2N9 RNA polymerase sigma factor n=9 Tax=Photobacterium RepID=Q1Z2N9_PHOPR Length = 291 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 103/280 (36%), Positives = 161/280 (57%), Gaps = 4/280 (1%) Query: 328 EKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLV 387 +K + + L++I + LT + + AKK M+E+NLRLV Sbjct: 4 KKAETQTFDADVIQLYLREIALKPLLTKH---EEILYSRKSLTGDKEAKKVMIESNLRLV 60 Query: 388 ISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA 447 +SIAKKY G+Q DLI EGNIGL+ +V+KF+ RG++FSTYATWWI+Q I R I +QA Sbjct: 61 VSIAKKYRGSGMQLSDLIDEGNIGLITSVEKFDPERGFRFSTYATWWIKQTIERCIHNQA 120 Query: 448 RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISM 507 RTIR+PVH+ + IN + R +Q++++ +EPT EE+AE++ D I VL +S Sbjct: 121 RTIRLPVHVSKEINTIIRTHKQLMKKNNQEPTREEVAEKLERSVDDISSVLAYDAPIVSF 180 Query: 508 ETPIGDDEDS-HLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGID 566 + I DD +S + FI D + + P + ++ +L L R+ ++L RFG+ Sbjct: 181 DQTINDDANSQSISVFIADDSSDKPESQVDKDDIKGLALAMLENLNQRDREILCRRFGLL 240 Query: 567 MNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEV 606 TL++V + +TRERIRQ++ +L+KL++ + Sbjct: 241 GYEVQTLQQVANEVGLTRERIRQLQVSSLKKLKNTLERDN 280 Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 40/278 (14%), Positives = 85/278 (30%), Gaps = 15/278 (5%) Query: 84 LSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITY 143 D +++Y+RE+ LLT+ EI +++ G + + + E + Sbjct: 2 EIKKAETQTFDADVIQLYLREIALKPLLTKHEEILYSRKSLTGDKEAKKVMIES--NLRL 59 Query: 144 LLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDD 203 ++ + +LSDLI D + + + Sbjct: 60 VVSIAKKYRGSGMQLSDLI----DEGNIGLITSVEKFDPERGFRFSTYATWWIKQTIERC 115 Query: 204 DSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVP 263 P ++ + + T + K T +E KL V Sbjct: 116 IHNQARTIRLPVHVSKEINTI----IRTHKQLMKKNNQEPTREEVAEKLERSVDDISSVL 171 Query: 264 KQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMN 323 +V+ + + D + I + ++ ++ +N Sbjct: 172 AYDAPIVSFDQTIND--DANSQSISVFIADDSSDKPES---QVDKDDIKGLALAMLENLN 226 Query: 324 KPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDI 361 + E L + +Q LQQ+ E GLT E+++ + Sbjct: 227 QRDREILCRRFGLLGYEVQTLQQVANEVGLTRERIRQL 264 >UniRef50_B1ZRN1 RNA polymerase sigma factor n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZRN1_OPITP Length = 347 Score = 250 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 105/275 (38%), Positives = 150/275 (54%), Gaps = 4/275 (1%) Query: 327 SEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRL 386 S + S+ LQ I + LT + + R+ G+A A+ M+ ANLRL Sbjct: 22 SARDAAESDGRSSLQIYLQDIGQTPLLTAREEFALAERVRRGDAG---ARDHMIRANLRL 78 Query: 387 VISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQ 446 V+ IAK Y GL DLI EGN+GL+ AVD+F+ R G K STYA WWIRQAI R+ A Sbjct: 79 VVRIAKDYAQYGLPLADLISEGNVGLIHAVDRFDPRIGGKLSTYAAWWIRQAIRRAFAHH 138 Query: 447 ARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPIS 506 AR IR+PVHM++ I +L R + ++ GRE T +ELA + P +KI P S Sbjct: 139 ARAIRLPVHMLDRIARLRRAQASLSEQFGREATTDELAAELQAPVEKIALWKSAGDAPFS 198 Query: 507 METPIGDDEDS-HLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGI 565 ++ +G +S L + I D + ++A L REA +LR+RFG+ Sbjct: 199 LDAAVGTGSESRRLSETIRDERAPTAFTQLRDATTARDLRAIIATLDVREATILRLRFGL 258 Query: 566 DMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 600 D + TL V +F +TRER+RQ+E +AL+ +R+ Sbjct: 259 DGDEPQTLHAVSLRFGITRERVRQLERRALQNVRN 293 Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 42/336 (12%), Positives = 101/336 (30%), Gaps = 5/336 (1%) Query: 66 MLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIED 125 ++ + E ++ S+ ++ +++Y++++G LLT E +A+R+ Sbjct: 3 LIDNESIGPSTGEVLSRRSSARDAAESDGRSSLQIYLQDIGQTPLLTAREEFALAERVRR 62 Query: 126 GINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLIT-GFVDPNAEEDLAPTATHVGSE 184 G + + + ++ L+DLI+ G V D Sbjct: 63 GDAGARDHMIRA--NLRLVVRIAKDYAQYGLPLADLISEGNVGLIHAVDRFDPRIGGKLS 120 Query: 185 LSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHAT 244 + + +AR + A+ R+ + + Sbjct: 121 TYAAWWIRQAIRRAFAHHARAIRLPVHMLDRIARLRRAQASLSEQFGREATTDELAAELQ 180 Query: 245 AQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFIT 304 A E + L + + R + + +R + + + Sbjct: 181 APVEKIALWKSAGDAPFSLDAAVGTGSESRRLSETIRDERAPTAFTQLRDATTARDLRAI 240 Query: 305 LFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRR 364 + T + T ++ + LH VS ++++Q+E + R Sbjct: 241 IATLDVREATILRLRFGLDGDEPQTLHAVSLRFGITRERVRQLERRALQNVRNAWAFRER 300 Query: 365 MSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQ 400 + E A + + A +R +A + R Sbjct: 301 IRTREEIALDERHHRLRAVVR--EFVAARPARRSRP 334 >UniRef50_B7KLN9 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7KLN9_CYAP7 Length = 308 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 93/240 (38%), Positives = 143/240 (59%), Gaps = 10/240 (4%) Query: 370 AKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFST 429 + ++AK ++V+ NLRLVI++AKKY RGL F DL+QEGNIGL++A + FE +GYKFST Sbjct: 78 EEGQQAKNQLVQGNLRLVINLAKKYLGRGLSFEDLLQEGNIGLIRAAELFEPSKGYKFST 137 Query: 430 YATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLM 489 YA WWIRQ I R+I + ARTIR+PVH+I +N++ + ++ ++GR PT +E+A + M Sbjct: 138 YAYWWIRQQIIRAINNSARTIRLPVHIIARLNRIKKTQHKLAAQLGRTPTVQEIATSLQM 197 Query: 490 PEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLA 549 +I K ++A++ IS+ T + + L D I D + D + + Sbjct: 198 SAQEIEKYREVAQKTISLSTIVDEQGRETLQDLIADPNPQP--DFLERVFSYEQILEKME 255 Query: 550 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRS 609 L R +L+ R + + TLE +G +++ER+RQI KAL +LR E L+ Sbjct: 256 TLPPRYQDILKKR----IYEEQTLEAIGTSTKLSKERVRQIFQKALSRLRE----EFLKD 307 >UniRef50_A8ZPW9 RNA polymerase sigma-70 factor, putative n=10 Tax=Acaryochloris marina MBIC11017 RepID=A8ZPW9_ACAM1 Length = 274 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 93/258 (36%), Positives = 148/258 (57%), Gaps = 5/258 (1%) Query: 343 KLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL 402 L++I L+ ++ A RAK+ ++E NLRLV+SIAKK+ NRGL Sbjct: 11 YLKEIARYPILS---HEEEILLARQVNAGNLRAKQRLIECNLRLVVSIAKKHQNRGLPLQ 67 Query: 403 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 462 DLIQEG+IGL AVDKF+ +G +FSTYA WWIRQ +T ++ ++R I +P + E I+K Sbjct: 68 DLIQEGSIGLSNAVDKFDLAQGCRFSTYAYWWIRQGVTAALRAKSRPIYLPQYQWEMISK 127 Query: 463 LNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDF 522 + + R++ Q++GREP+ ELA+ + I + L + ++ S++ P+G + L D Sbjct: 128 IKKHFRELNQQLGREPSLSELAKATNLKPKTISRTLHLFQKVSSLDQPVGHQQKDTLLDL 187 Query: 523 IEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDV 582 + + P + L V+A L RE VL RFG++ + ++ E+G+Q + Sbjct: 188 MAGE--DQPTLYLESLQLDEQLSQVMAHLDKREQFVLSQRFGLEDDQPKSMREIGEQIGL 245 Query: 583 TRERIRQIEAKALRKLRH 600 +RE IR I K ++KL+ Sbjct: 246 SREGIRLILNKIMKKLQK 263 Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 32/67 (47%), Gaps = 2/67 (2%) Query: 96 DPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEE 155 D + Y++E+ +L+ E EI +A+++ G + + + E + ++ + + Sbjct: 6 DSLHFYLKEIARYPILSHEEEILLARQVNAGNLRAKQRLIEC--NLRLVVSIAKKHQNRG 63 Query: 156 ARLSDLI 162 L DLI Sbjct: 64 LPLQDLI 70 >UniRef50_C1DVG2 RNA polymerase sigma factor n=4 Tax=Hydrogenothermaceae RepID=C1DVG2_SULAA Length = 285 Score = 249 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 88/275 (32%), Positives = 149/275 (54%), Gaps = 9/275 (3%) Query: 343 KLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL 402 ++ I + LT EQ K+I ++ +G+ + A ++++ +NLR VI+IAK+Y G+ Sbjct: 13 YIRSIYKIPLLTPEQEKEILEKIKLGDKE---AFQKLILSNLRFVINIAKRYAGYGIPLQ 69 Query: 403 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 462 DLI GNIGL++A +F+ +G KF +YA WWI+Q+I +++ + IR P + K Sbjct: 70 DLISAGNIGLIEAAKRFDPSKGVKFISYAIWWIKQSIINTLSQEGDIIRKPTKIQSLFQK 129 Query: 463 LNRISRQMLQEMGREPTPEEL-----AERMLMPEDKIRKVLKIAKEPISMETPI-GDDED 516 ++ + + REP+ +E+ E + + +D I L + IS++ PI DED Sbjct: 130 ISNAYFYLKDSLNREPSVDEIHSFLLREGLEVEKDTIENYLFFNQHFISLDEPILSQDED 189 Query: 517 SHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEV 576 HL D I ++ E E + ++L L+ RE ++L RFG+ TL+EV Sbjct: 190 IHLSDTISNSGTEDIERKLIDEDILKFIDELLDTLSPREKQILIHRFGLYGEEPKTLKEV 249 Query: 577 GKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 G ++RER+RQIE + L+KLR + + + Sbjct: 250 GNIVGISRERVRQIEIRLLKKLRKLATKRKIEDLI 284 Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 51/144 (35%), Gaps = 6/144 (4%) Query: 95 TDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAE 154 + V Y+R + + LLT E E +I ++I+ G + + + +++ R Sbjct: 7 EEGVEYYIRSIYKIPLLTPEQEKEILEKIKLGDKEAFQKLILS--NLRFVINIAKRYAGY 64 Query: 155 EARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDP 214 L DLI+ + S+ + + + S + D P Sbjct: 65 GIPLQDLISAGNI----GLIEAAKRFDPSKGVKFISYAIWWIKQSIINTLSQEGDIIRKP 120 Query: 215 ELAREKFAELRAQYVVTRDTIKAK 238 + F ++ Y +D++ + Sbjct: 121 TKIQSLFQKISNAYFYLKDSLNRE 144 >UniRef50_C7LZN3 RNA polymerase sigma factor n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LZN3_ACIFD Length = 294 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 98/289 (33%), Positives = 161/289 (55%), Gaps = 2/289 (0%) Query: 327 SEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGE--AKARRAKKEMVEANL 384 E L + R + +EE L+I + + A + A++ VE N+ Sbjct: 6 PEALDGARAVLARGRRGRLLPDEEVALSIVLQEAQEAEDVPPDVAAVVQAARERFVEGNM 65 Query: 385 RLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIA 444 LV+SIA++Y G+ DL+QEG IGL++A+D ++ RRG++FSTYATWWIRQAI +++ Sbjct: 66 GLVVSIARRYVQPGISLDDLVQEGTIGLLRAIDLYDGRRGFRFSTYATWWIRQAIAQALT 125 Query: 445 DQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEP 504 R + +P + + ++ R++ Q +GR+P+ ELA + E ++R++ A+ Sbjct: 126 RTRRDVVLPRGIAAELARVEVQRRELEQALGRQPSMAELAAASGIDELRVRELQGYARSV 185 Query: 505 ISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFG 564 +S++ +G++ D L D + D E ++ LR LA L RE +VL RFG Sbjct: 186 LSLDQAVGEERDVTLADIVPDRDAEPIEETIEHADLRTVIAGALAHLEPREREVLAFRFG 245 Query: 565 IDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 613 ++ N ++LE+ F + RERIRQIEA+A+ +LR + VLR L+D Sbjct: 246 LEGNEPHSLEDAAAYFGIARERIRQIEARAIARLRRGDLAPVLRRVLED 294 >UniRef50_A9GLY8 RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GLY8_SORC5 Length = 446 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 114/246 (46%), Positives = 168/246 (68%), Gaps = 1/246 (0%) Query: 367 IGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYK 426 G +AK E+V+ANLRL ++IA+++ G+ LDL+QEGN+GL++A DKFEYRRG++ Sbjct: 201 RGRRAVAQAKSELVQANLRLAVAIAREHQRFGVPLLDLVQEGNLGLIRAADKFEYRRGHR 260 Query: 427 FSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAER 486 F TYA WWI+QAI R+I +Q + +R+PVH+ +++ R R ++QE GREP+ EE+AER Sbjct: 261 FGTYAAWWIKQAIKRTILNQGKPVRMPVHLTAIRSQVVRARRDLVQERGREPSVEEIAER 320 Query: 487 MLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHD 546 + +K+R + ++A EP+S++ P+G++ D+ GD + + P D L T + Sbjct: 321 SGLTVEKVRVISELALEPLSLDAPVGEEGDTRYGDLLANDE-PTPADMLARRRLIEQTRE 379 Query: 547 VLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEV 606 +L L RE ++LR RFG+D N D TLEE+G+ F +TRERIRQIEAK L KLR SR Sbjct: 380 LLDSLQPRERELLRRRFGLDGNEDETLEEIGQSFSLTRERIRQIEAKLLEKLRTRSRQRE 439 Query: 607 LRSFLD 612 L S+L+ Sbjct: 440 LGSYLE 445 Score = 50.0 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 41/101 (40%) Query: 100 MYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLS 159 +Y R + + LTREGE+ I +RIE G + P A+ L + V+ L Sbjct: 50 LYFRALAGSQPLTREGEVAIGRRIEAGALACFEAWVRSPVALRELASTAEDVQVGALSLR 109 Query: 160 DLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEED 200 DL+ + E D + L++ L ED + Sbjct: 110 DLLCEADAGDPEADASAKRLAELLTLARSLLGRQITEDGVE 150 >UniRef50_D1HZ60 Whole genome shotgun sequence of line PN40024, scaffold_39.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1HZ60_VITVI Length = 555 Score = 247 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 82/356 (23%), Positives = 167/356 (46%), Gaps = 17/356 (4%) Query: 262 VPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIA 321 + + RVM ++ +++ R + + ++ E ++ Sbjct: 208 TSARQRRISGRKRVMNEKSKSRVRAALGVENRLKG-----YVKGVVSEELLTHAQVVLLS 262 Query: 322 MNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVE 381 L D + + E+ ++ + A++++ Sbjct: 263 NKIKAGLLLEDHKSRLKERIGSEPTDEQVAASLRMSRAEL----QSKLIECSLAREKLAM 318 Query: 382 ANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITR 441 +N+RLV+SIA++Y N G + DL+Q G IGL++ ++KF+ +G+K STY WWIRQ ++R Sbjct: 319 SNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSR 378 Query: 442 SIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIA 501 ++ + +RT+R+P H+ E ++ + ++ E G P+ + +AE + M + K+R + Sbjct: 379 ALVENSRTLRLPSHLHERLSLIRNAKIRLE-EKGITPSIDRIAECLNMSQKKVRNATEAI 437 Query: 502 KEPISMETP----IGDDEDSHLGDFIEDTTLE-LPLDSATTESLRAATHDVLA-GLTARE 555 + S++ + L +I D LE P +L+ + ++ L RE Sbjct: 438 SKVFSLDREAFPSLNGLPGETLHSYIADVRLENNPWHGVDEWALKDEVNKLINTTLGERE 497 Query: 556 AKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 ++R+ +G+D N T E++ K+ ++RER+RQ+ AL KL++ +R + + L Sbjct: 498 RDIIRLYYGLD-NECLTWEDISKRIGLSRERVRQVGLVALEKLKNAARKGRMEAML 552 >UniRef50_C6JJT6 RNA polymerase sigma factor n=5 Tax=Fusobacterium RepID=C6JJT6_FUSVA Length = 275 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 96/263 (36%), Positives = 161/263 (61%), Gaps = 5/263 (1%) Query: 343 KLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL 402 L I + L ++ ++ + G+ + +K +++ +NLRLV++IAK Y N+GL F+ Sbjct: 12 YLADIRKYKILDKDEELNLLIKAKAGDEE---SKNQLILSNLRLVVNIAKGYINKGLSFI 68 Query: 403 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 462 DLI EGN+GL+ A++KF+ +G++FSTYA WWI+Q+I++++ + R IRIP + + +NK Sbjct: 69 DLISEGNLGLIYAIEKFDITKGFRFSTYAVWWIKQSISKAVIVKGREIRIPSYKYDLLNK 128 Query: 463 LNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDF 522 +NR L++ G P EE+A + + DKI+ ++ ++P+S+ T IGDD +L D Sbjct: 129 VNRYVMSRLKDEGNYPPVEEIAAELNIDVDKIQDIIMDFQDPMSLSTQIGDD--IYLEDT 186 Query: 523 IEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDV 582 + + E R D++ L RE ++L++R+G+D +TLEE+G ++ Sbjct: 187 LAQQEDFSMEEEIFNEMGRKQVRDMVNQLEEREKEILKLRYGLDGYEIHTLEEIGNTLNI 246 Query: 583 TRERIRQIEAKALRKLRHPSRSE 605 TRER+RQIE K L+KLR E Sbjct: 247 TRERVRQIEKKTLQKLRSKYTKE 269 >UniRef50_Q47D27 RNA polymerase sigma factor n=1 Tax=Dechloromonas aromatica RCB RepID=Q47D27_DECAR Length = 309 Score = 246 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 97/282 (34%), Positives = 157/282 (55%), Gaps = 4/282 (1%) Query: 324 KPWSEKLHDVSEEVHR-ALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEA 382 P E++ E + L +I + LT + +R + G+ A++ M+E Sbjct: 22 PPEPERVLPEIELLEDVTQLYLSEIGAKPLLTPAEELATSRLVREGDF---SARQRMIEH 78 Query: 383 NLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRS 442 NLRLV++IAK Y NRG+ LDLI+EGN+GL+ A++KF+ RG++FSTYATWWIRQ I R Sbjct: 79 NLRLVVNIAKHYLNRGIPLLDLIEEGNLGLIHALEKFDPERGFRFSTYATWWIRQNIERG 138 Query: 443 IADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAK 502 I +Q+RTIR+PVH+++ IN + R R + R+ T E +A + P +R++L + + Sbjct: 139 IMNQSRTIRLPVHIVKEINVVLRAMRHLESADKRDSTVERIALLIDRPVADVRRILSLNE 198 Query: 503 EPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMR 562 S++ P+ D + + + I D P + + + D L LT R+ V+ R Sbjct: 199 HIASLDAPLEIDPNHTMAEVIADDGESDPESLLQSSEVGSLVDDWLEQLTERQRSVIERR 258 Query: 563 FGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRS 604 +G+ TL+ + +TRER+RQI+ + L +LR + Sbjct: 259 YGLSGADLATLDVIACDLGLTRERVRQIQMEGLDRLRKIIKR 300 Score = 47.7 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 2/83 (2%) Query: 81 AQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEA 140 V EI D ++Y+ E+G LLT E+ ++ + +G + + E Sbjct: 22 PPEPERVLPEIELLEDVTQLYLSEIGAKPLLTPAEELATSRLVREGDFSARQRMIE--HN 79 Query: 141 ITYLLEQYDRVEAEEARLSDLIT 163 + ++ L DLI Sbjct: 80 LRLVVNIAKHYLNRGIPLLDLIE 102 >UniRef50_A7MZX8 RNA polymerase sigma factor n=1 Tax=Vibrio harveyi ATCC BAA-1116 RepID=A7MZX8_VIBHB Length = 287 Score = 246 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 92/276 (33%), Positives = 163/276 (59%), Gaps = 4/276 (1%) Query: 329 KLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVI 388 K+++ S E+ L I + L+ + ++ RR +G+A A+ M+ +NLRLV+ Sbjct: 7 KINNNSSELTAELIYFNDIGKYALLSADDEREYARRAKMGDAD---ARTRMINSNLRLVV 63 Query: 389 SIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQAR 448 +IAK+Y RGL FLDLI EGNIGLM+AV+KF+ +G++FSTYAT WIRQ+I R + +QAR Sbjct: 64 NIAKRYKGRGLTFLDLISEGNIGLMRAVEKFDPEKGFRFSTYATHWIRQSIERELMNQAR 123 Query: 449 TIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISME 508 T+R+PVH+ + + + + ++++ Q+ TP ++A+ + +P + K L+ K IS++ Sbjct: 124 TVRLPVHINKELKRYVKATKELSQKTQ-TITPRDIADHLEIPVSSVLKHLEFDKSTISLD 182 Query: 509 TPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMN 568 + +E L + + L P ++ + L +L R+G+D N Sbjct: 183 SYQDKEEAKPLAETMACHRLRCPELELEEDNAFLMLLQWIEELEPDLKLILTRRYGLDGN 242 Query: 569 TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRS 604 T +L+ VG + +RERIR ++ + ++KL++ +++ Sbjct: 243 TPTSLDTVGTELGYSRERIRHLQMQGIKKLQNLAKN 278 Score = 44.6 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 2/64 (3%) Query: 100 MYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLS 159 +Y ++G LL+ + E + A+R + G + + + ++ R + Sbjct: 20 IYFNDIGKYALLSADDEREYARRAKMGDADARTRMINS--NLRLVVNIAKRYKGRGLTFL 77 Query: 160 DLIT 163 DLI+ Sbjct: 78 DLIS 81 >UniRef50_A1TWY8 RNA polymerase, sigma 32 subunit, RpoH n=2 Tax=Marinobacter RepID=A1TWY8_MARAV Length = 330 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 81/295 (27%), Positives = 151/295 (51%), Gaps = 10/295 (3%) Query: 315 WFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKD----------INRR 364 +F A + ++ ++ R+L+ + T + ++D + R Sbjct: 26 YFRDASRHDLLSETDERRLARKLIRSLRVIHTELALPEDTPQTLRDVVGSLGDACAFSAR 85 Query: 365 MSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRG 424 A + ++++NLRL + IA++Y + G+ DLIQ+ N+GL+KAV++++ +G Sbjct: 86 CRRAYHLALACRHRLIQSNLRLAVHIARRYGHHGIAMSDLIQDANVGLIKAVERYDPGKG 145 Query: 425 YKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELA 484 ++FSTYA WWI + + R + R + P +++E I +L ++S ++ Q +GREPT ELA Sbjct: 146 FRFSTYAYWWISEEVRRCLQRGVRVVHTPENVVEEIRQLQKVSMRLHQSLGREPTQSELA 205 Query: 485 ERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAAT 544 M +I ++ +A +S + P+ +D L D ++ P Sbjct: 206 REMEATPSRIGELRALAAREVSTDVPLVEDGSVTLADSLDAGADTRPDQPFRARDRMIRL 265 Query: 545 HDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLR 599 ++ L+ RE +L R+G+ + TL+ + +Q ++RER+RQIE ALRKL+ Sbjct: 266 ERMMGALSDRERDILTRRYGLGLIEPETLQTISEQLGLSRERVRQIEKGALRKLQ 320 >UniRef50_Q3AYF6 Possible type II alternative RNA polymerase sigma factor n=26 Tax=Cyanobacteria RepID=Q3AYF6_SYNS9 Length = 309 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 96/254 (37%), Positives = 148/254 (58%), Gaps = 7/254 (2%) Query: 360 DINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF 419 + N + RAK +M+ ANLRLV+++AK+Y +GL LDLIQEG +GL +AV+K+ Sbjct: 52 EYNDNQRFVIRRGERAKNQMITANLRLVVNLAKRYQGKGLDLLDLIQEGTLGLTRAVEKY 111 Query: 420 EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPT 479 + RG++FSTYA WWIRQ + R+++ Q+RTIRIPV++ E + KL +++Q G T Sbjct: 112 DPTRGHRFSTYAYWWIRQGLNRALSTQSRTIRIPVNVNEKLTKLRAAKARIMQRNGLTAT 171 Query: 480 PEELAERMLMPEDKIRKVLKIAKE--PISMETPIGDDED-SHLGDFIEDTTLELPLDSAT 536 E+LAE M +P ++ +L +S++ + D S L D + + P++ A Sbjct: 172 GEQLAEFMNVPLTEVEDLLACELRSVTVSLQGIVKSKSDPSELVDILPSDEIP-PMERAE 230 Query: 537 TESLRAATHDVLAG--LTAREAKVLRMRFGIDM-NTDYTLEEVGKQFDVTRERIRQIEAK 593 A+ +L+ LT +E KV+ +RFG+D N TL EV + + +RE RQ+ + Sbjct: 231 IAERSASVWALLSKANLTPKEHKVVTLRFGLDGTNEWRTLAEVARHMNCSREYCRQVVQR 290 Query: 594 ALRKLRHPSRSEVL 607 ALRKLR L Sbjct: 291 ALRKLRKTGIQSGL 304 >UniRef50_Q710C2 Sigma factor (Fragment) n=1 Tax=Spinacia oleracea RepID=Q710C2_SPIOL Length = 548 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 85/355 (23%), Positives = 171/355 (48%), Gaps = 17/355 (4%) Query: 274 RVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEK---L 330 + ++ R +ER + + Q K+ + E+S + A + + Sbjct: 194 KKLVFSKRKEERKLRQERRLQASTSKRCACKSESSIESSIHHVVSTAAKKTKARGRRAII 253 Query: 331 HDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKA-------------RRAKK 377 E+ R ++ + Q+E+ ++ EA + Sbjct: 254 AKNEAEMSRGIKVVAQLEKVKLTLEKETGKAVSLNCWAEAAGIDEKVLQHDLHFGWYCRD 313 Query: 378 EMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ 437 E++++ LV+ +++ Y G+ DL+Q GNIG+++ ++F++ RGY+FSTY +WIR+ Sbjct: 314 ELLKSGRSLVLYLSRYYRGLGVAHEDLMQAGNIGILQGAERFDHTRGYQFSTYVQYWIRK 373 Query: 438 AITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKV 497 A+++ ++ R I++P + TIN++ + + + + G+ P E+++ + DKI+ Sbjct: 374 AMSQLVSRHGRGIKVPTTLSTTINRVQKARKILKRSQGKHPDDVEVSKSTGLSLDKIKSA 433 Query: 498 LKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAK 557 + S++ +G + + DT LE+P + + +R H +L L +E + Sbjct: 434 DNCLRIVGSLDQKVGHFINMKYLECTPDTALEMPEKTVMKQHMRNDVHKLLQELDPKERR 493 Query: 558 VLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 VL R+G++ +L EVGK FDV++E IR++E +AL KLR L+ +L+ Sbjct: 494 VLIHRYGLE-GHCMSLHEVGKVFDVSKEWIRKMEKRALTKLRTEQNQTNLKHYLN 547 >UniRef50_B6J9R7 RNA polymerase sigma factor RpoD n=1 Tax=Oligotropha carboxidovorans OM5 RepID=B6J9R7_OLICO Length = 387 Score = 245 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 118/353 (33%), Positives = 185/353 (52%), Gaps = 10/353 (2%) Query: 261 LVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAI 320 L +R +DRV + +L + C + + + + +E D + Sbjct: 40 LSADSERAEGELLRSDIDRVYLRRKLTIAECATVEQQLRALGVRIVEDDEDEDNQTEPSN 99 Query: 321 AMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMV 380 + K + ++ + + + I + ++D+N+ +A +AK V Sbjct: 100 SQKKKYLNEMEE--------RELGRTIRLAKDIQYAALEDLNQYERQLVHRAEKAKARFV 151 Query: 381 EANLRLVISIAKKYTN-RGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAI 439 E+NL V +A + N + L DL QEG +GL+KA + F+ G++F TYATWWI+Q + Sbjct: 152 ESNLLYVRKLANRKRNLKHLTADDLFQEGLMGLLKATELFDPELGFRFKTYATWWIQQYM 211 Query: 440 TRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLK 499 +R++ D RTIR+PVH E K+ R + ++ E+GREPT ELA + + +++ K+L Sbjct: 212 SRALDDGDRTIRLPVHRHEYFRKIKRKTAKLTFELGREPTLNELATELGLERERLAKLLW 271 Query: 500 IAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVL 559 +E ED+ + + D LD + LR VLA L RE +++ Sbjct: 272 RLHVTECVEADAPIGEDTTVLSYKADE-SPSILDLVALQQLRTMVARVLATLVPREERII 330 Query: 560 RMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 RMRFG+D + + TLE +G F VTRERIRQIEAKALRKL+HPSRS LR+FL+ Sbjct: 331 RMRFGLDGSGEQTLEAIGNVFGVTRERIRQIEAKALRKLKHPSRSRALRTFLE 383 >UniRef50_Q21UR2 RNA polymerase sigma factor n=5 Tax=Burkholderiales RepID=Q21UR2_RHOFD Length = 350 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 91/287 (31%), Positives = 152/287 (52%), Gaps = 10/287 (3%) Query: 328 EKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLV 387 E L E L+Q+ T T ++ ++ R G+ A++ M+E NLRLV Sbjct: 61 EALDAAGESGDALTVYLRQVRRTTLFTPQEEFELAGRARAGDFA---ARQSMIEHNLRLV 117 Query: 388 ISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA 447 +SIAK Y RG+ LDLI+EGN+GLM A+DKFE RG++FSTYATWWIRQ++ R++ Q Sbjct: 118 VSIAKAYMGRGVPLLDLIEEGNLGLMHAIDKFEPERGFRFSTYATWWIRQSVDRALMCQG 177 Query: 448 RTIRIPVHMIETINKLNRISRQMLQEMGREPT------PEELAERMLMPEDKIRKVLKIA 501 R +R+PV+++ + ++ R R + + + E++A + + +L +A Sbjct: 178 RVVRLPVNVVRELQQVLRARRALESDAAFVVSRPDGIRVEDVAALLGRDPVHVADLLGLA 237 Query: 502 KEPISMETPIGDDEDS-HLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLR 560 + P S++ + ++ GD + D P + + + L+ RE +VL Sbjct: 238 EAPRSLDAALDRSGETQTFGDSLVDEITADPSGVTQVHEVERLLEEWVGTLSEREKEVLE 297 Query: 561 MRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVL 607 RFG+ TL+ + + D+TRER+RQ++ +AL KL+ + Sbjct: 298 GRFGLHDREPETLDVLSARLDLTRERVRQVQNEALAKLKRYLAHRGI 344 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 2/106 (1%) Query: 58 EAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEI 117 + + + ++ E A+ A G + D + +Y+R++ L T + E Sbjct: 33 DGGEYAADSVVKHGLSEHASPALPGAGLEALDAAGESGDALTVYLRQVRRTTLFTPQEEF 92 Query: 118 DIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLIT 163 ++A R G + S+ E + ++ L DLI Sbjct: 93 ELAGRARAGDFAARQSMIE--HNLRLVVSIAKAYMGRGVPLLDLIE 136 >UniRef50_C6Y0F4 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6Y0F4_PEDHD Length = 289 Score = 243 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 84/251 (33%), Positives = 141/251 (56%) Query: 348 EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 407 E +++ ++ R +S + A +++ NLR V+S+AKKY ++GL+ DLI E Sbjct: 23 SEIGRISLTDPEEEFRLVSAIRNGDQEALHRLIKGNLRFVVSVAKKYQDKGLKLGDLINE 82 Query: 408 GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 467 GNIGL+KA +F+ RG+KF T+A WW+RQAI ++IA+Q R IR+P + + I++LN+ Sbjct: 83 GNIGLIKAAHRFDATRGFKFITFAVWWVRQAILQAIAEQRRLIRLPGNQLLGISRLNQAV 142 Query: 468 RQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTT 527 ++ Q++ R PT EELA DK+ A S++ I ++ S L + I D Sbjct: 143 LKLEQQLERMPTVEELAVYTGFTVDKVMDYTANAAFTYSLDDVIKEESGSTLMEVIADEA 202 Query: 528 LELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERI 587 SL + L L+ RE K++ + +G++ +E++ K +++ERI Sbjct: 203 THQTDHFTLAASLSTDLNRALDILSKREQKIIILFYGLNGYPQTAIEDMQKILKLSKERI 262 Query: 588 RQIEAKALRKL 598 RQ++ KA + L Sbjct: 263 RQLKDKAHKTL 273 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 2/76 (2%) Query: 88 ESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQ 147 S R +D V Y+ E+G + L E E + I +G + + + + +++ Sbjct: 8 PSIAKRDSDVVESYLSEIGRISLTDPEEEFRLVSAIRNGDQEALHRLIK--GNLRFVVSV 65 Query: 148 YDRVEAEEARLSDLIT 163 + + + +L DLI Sbjct: 66 AKKYQDKGLKLGDLIN 81 >UniRef50_Q9KJT7 RNA polymerase sigma factor n=1 Tax=Peanut witches'-broom phytoplasma RepID=Q9KJT7_PEWBP Length = 458 Score = 243 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 134/450 (29%), Positives = 198/450 (44%), Gaps = 33/450 (7%) Query: 185 LSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHAT 244 L + + +++E + + + + ++ +Y ++I Sbjct: 16 LPTDLSEREQEEINKLKKSWESSLGYLNEEKSVINEYQNKCDEYQAQLNSI------QPQ 69 Query: 245 AQEEILKLSEVFKQF-RLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFI 303 + E L ++ +L + + ++ + + I KL V+ K K Sbjct: 70 IENETKNLIKLKLTLEKLTKPKSKNSKLKIWKLLVKSAKSKFKIWKLLVKSAKSKFKLVN 129 Query: 304 TLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINR 363 T + K L V + L T K++ Sbjct: 130 YKQPKENTKKCYLM-LKNTEKNLKNDLKKVKNNIK-IQLFLDLTSTNTSNWGIIKKELLF 187 Query: 364 RMSIGEAKARRAKKEMVE----------------ANLRLVISIAKKYTNRGLQFLDLIQE 407 +M + K E +NLR+V+SIAKK + RG FLDLI E Sbjct: 188 KMMQVKKKLHLLFNEFFRYVFNNQYSSHYGIKQLSNLRIVVSIAKKQSERGQYFLDLIHE 247 Query: 408 GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 467 GN+GLMK VDKF+Y +G+KFSTYATWWIRQAITR++ADQ+RTIR PVH+ + +NK Sbjct: 248 GNMGLMKTVDKFDYTKGFKFSTYATWWIRQAITRAVADQSRTIRCPVHVSDILNKNFAFK 307 Query: 468 RQMLQEM---GREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIE 524 ++ Q++ R+ E+A+ M + K+ + K K F + Sbjct: 308 SKLTQDLARKARKAENHEIAKAMNIETKKL-MIYKWLKRNDFFRNIYSWWRWFFFRWFYK 366 Query: 525 DTTLELPLDSATTESLRAATHDVLAG-LTAREAKVLRMRFGI--DMNTDYTLEEVGKQFD 581 + T + + + L LT RE VL+MR+GI N +TLEEVG + Sbjct: 367 RSLRYFASWLYVTRNFKKTLEESLEEALTPREQLVLKMRYGILEGDNRVHTLEEVGAKLG 426 Query: 582 VTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 VTRERIRQIE KALRKLRHPSRS L SFL Sbjct: 427 VTRERIRQIETKALRKLRHPSRSNPL-SFL 455 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.309 0.138 0.365 Lambda K H 0.267 0.0424 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,315,220,390 Number of Sequences: 3077464 Number of extensions: 167524240 Number of successful extensions: 1233072 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 3063 Number of HSP's successfully gapped in prelim test: 7485 Number of HSP's that attempted gapping in prelim test: 1184966 Number of HSP's gapped (non-prelim): 38041 length of query: 613 length of database: 1,040,396,356 effective HSP length: 135 effective length of query: 478 effective length of database: 624,938,716 effective search space: 298720706248 effective search space used: 298720706248 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 96 (41.5 bits)