Phyre 2 alignment of P77858 with c3dpgA_

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Job Description | P77858
Confidence | 3.87% | Date | Wed Jan 25 15:21:12 GMT 2012
Rank | 20 | Aligned Residues | 17
% Identity | 24% | Template | c3dpgA_
PDB info | PDB header:hydrolase/dna | Chain: A: PDB Molecule:sgrair restriction enzyme; | PDBTitle: sgrai with noncognate dna bound
Resolution | 1.91 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 38 | . | 40 | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | 50 | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |
Query Sequence |  | R | M | H | S | R | R | G | P | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | G | I | W | Q | D | Y | R | D | I
Query Conservation |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | R | L | Q | G | R | V | Q | P | G | E | I | S | L | A | V | A | F | K | R | S | L | R | S | D | R | L | Y | Q | P | L | Y | E | A
Template Known Secondary structure |  | G | G | T | T |  | B |  | G | G | G |  |  |  |  |  |  |  |  | S | B |  |  | G | G | G | S |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 225 | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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