Phyre 2 alignment of P77858 with c2rmrA_

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Job Description | P77858
Confidence | 5.66% | Date | Wed Jan 25 15:21:12 GMT 2012
Rank | 10 | Aligned Residues | 29
% Identity | 34% | Template | c2rmrA_
PDB info | PDB header:transcription | Chain: A: PDB Molecule:paired amphipathic helix protein sin3a; | PDBTitle: solution structure of msin3a pah1 domain
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 33 | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | R | Q | I | R | A | R | M | H | S | R | R | G | P | G | I | W | Q | D | Y | R | D | I | H | K | L | F | K | R | Q | E | V
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | D | Q | V | K | L | Q | F | G | S | Q | . | . | P | Q | V | Y | N | D | F | L | D | I | M | K | E | F | K | S | Q | S | I
Template Known Secondary structure |  |  |  |  |  |  |  |  | S | S |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | S | S
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 131 | . | . | . | . | . | . | . | . | 140 |  |  | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | .

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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