Phyre 2 alignment of P77858 with c2ld7B_

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Job Description | P77858
Confidence | 2.45% | Date | Wed Jan 25 15:21:12 GMT 2012
Rank | 57 | Aligned Residues | 28
% Identity | 11% | Template | c2ld7B_
PDB info | PDB header:transcription | Chain: B: PDB Molecule:paired amphipathic helix protein sin3a; | PDBTitle: solution structure of the msin3a pah3-sap30 sid complex
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 33 | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | R | Q | I | R | A | R | M | H | S | R | R | G | P | G | I | W | Q | D | Y | R | D | I | H | K | L | F | K | R | Q | E | V
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | D | K | V | R | K | A | L | R | S | . | . | . | A | E | A | Y | E | N | F | L | R | C | L | V | I | F | N | Q | E | V | I
Template Known Secondary structure |  |  |  |  |  |  |  |  |  | S | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |  | S
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 469 | 470 | . | . | . | . | . | . | . |  |  |  | . | . | 480 | . | . | . | . | . | . | . | . | . | 490 | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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