BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (267 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P76210 Uncharacterized protein ydjO n=25 Tax=Enterobact... 547 e-154 UniRef50_B1ENN7 Putative uncharacterized protein n=1 Tax=Escheri... 61 4e-08 >UniRef50_P76210 Uncharacterized protein ydjO n=25 Tax=Enterobacteriaceae RepID=YDJO_ECOLI Length = 267 Score = 547 bits (1410), Expect = e-154, Method: Compositional matrix adjust. Identities = 267/267 (100%), Positives = 267/267 (100%) Query: 1 MFSTNLIQSNYGDLNIKSLAFDSFKERLQSTMTALTFFISTGQCDCDEIAESNFNYMIAY 60 MFSTNLIQSNYGDLNIKSLAFDSFKERLQSTMTALTFFISTGQCDCDEIAESNFNYMIAY Sbjct: 1 MFSTNLIQSNYGDLNIKSLAFDSFKERLQSTMTALTFFISTGQCDCDEIAESNFNYMIAY 60 Query: 61 MSNINYDASKPGAPALSFDTYLQDNVKYRVIINNLYGSEIRIRGINKDFIGMDVTSVFRP 120 MSNINYDASKPGAPALSFDTYLQDNVKYRVIINNLYGSEIRIRGINKDFIGMDVTSVFRP Sbjct: 61 MSNINYDASKPGAPALSFDTYLQDNVKYRVIINNLYGSEIRIRGINKDFIGMDVTSVFRP 120 Query: 121 EKMTNLISIKNRLVIHYLRTIYYEQNYIHPVGSIFAAIQKNESLLKFPSIISMLNINLLF 180 EKMTNLISIKNRLVIHYLRTIYYEQNYIHPVGSIFAAIQKNESLLKFPSIISMLNINLLF Sbjct: 121 EKMTNLISIKNRLVIHYLRTIYYEQNYIHPVGSIFAAIQKNESLLKFPSIISMLNINLLF 180 Query: 181 NPLNLPGMGSGVLEDIMSIPDSSLRKRLGYEVLSFSLQAHSLSQECIDKLDIFFADDLFK 240 NPLNLPGMGSGVLEDIMSIPDSSLRKRLGYEVLSFSLQAHSLSQECIDKLDIFFADDLFK Sbjct: 181 NPLNLPGMGSGVLEDIMSIPDSSLRKRLGYEVLSFSLQAHSLSQECIDKLDIFFADDLFK 240 Query: 241 YESVCIAAMEHLKSKATAPIQNGPLPA 267 YESVCIAAMEHLKSKATAPIQNGPLPA Sbjct: 241 YESVCIAAMEHLKSKATAPIQNGPLPA 267 >UniRef50_B1ENN7 Putative uncharacterized protein n=1 Tax=Escherichia albertii TW07627 RepID=B1ENN7_9ESCH Length = 103 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 35/97 (36%), Positives = 56/97 (57%), Gaps = 3/97 (3%) Query: 57 MIAYMSNINYDASKPGAPALSFDTYLQDNVKYRVIINNLYGSEIRIRGINKDFIGMDVTS 116 MIA + +I+YD P SF L+ + K +V I L G E RI N+ +D + Sbjct: 1 MIASIHHISYDYD---GPKFSFHASLESDNKIKVSIFALCGGEFRISVFNEKMNAIDFET 57 Query: 117 VFRPEKMTNLISIKNRLVIHYLRTIYYEQNYIHPVGS 153 F EKM +L+S++N+LVI L+ + Y+ + ++PVG+ Sbjct: 58 TFCVEKMVSLMSVRNKLVILNLKQMKYDSHRMYPVGT 94 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P76210 Uncharacterized protein ydjO n=25 Tax=Enterobact... 502 e-141 UniRef50_B1ENN7 Putative uncharacterized protein n=1 Tax=Escheri... 156 6e-37 Sequences not found previously or not previously below threshold: UniRef50_B8ZX06 Invected n=1 Tax=Papilio dardanus RepID=B8ZX06_P... 40 0.088 CONVERGED! >UniRef50_P76210 Uncharacterized protein ydjO n=25 Tax=Enterobacteriaceae RepID=YDJO_ECOLI Length = 267 Score = 502 bits (1292), Expect = e-141, Method: Composition-based stats. Identities = 267/267 (100%), Positives = 267/267 (100%) Query: 1 MFSTNLIQSNYGDLNIKSLAFDSFKERLQSTMTALTFFISTGQCDCDEIAESNFNYMIAY 60 MFSTNLIQSNYGDLNIKSLAFDSFKERLQSTMTALTFFISTGQCDCDEIAESNFNYMIAY Sbjct: 1 MFSTNLIQSNYGDLNIKSLAFDSFKERLQSTMTALTFFISTGQCDCDEIAESNFNYMIAY 60 Query: 61 MSNINYDASKPGAPALSFDTYLQDNVKYRVIINNLYGSEIRIRGINKDFIGMDVTSVFRP 120 MSNINYDASKPGAPALSFDTYLQDNVKYRVIINNLYGSEIRIRGINKDFIGMDVTSVFRP Sbjct: 61 MSNINYDASKPGAPALSFDTYLQDNVKYRVIINNLYGSEIRIRGINKDFIGMDVTSVFRP 120 Query: 121 EKMTNLISIKNRLVIHYLRTIYYEQNYIHPVGSIFAAIQKNESLLKFPSIISMLNINLLF 180 EKMTNLISIKNRLVIHYLRTIYYEQNYIHPVGSIFAAIQKNESLLKFPSIISMLNINLLF Sbjct: 121 EKMTNLISIKNRLVIHYLRTIYYEQNYIHPVGSIFAAIQKNESLLKFPSIISMLNINLLF 180 Query: 181 NPLNLPGMGSGVLEDIMSIPDSSLRKRLGYEVLSFSLQAHSLSQECIDKLDIFFADDLFK 240 NPLNLPGMGSGVLEDIMSIPDSSLRKRLGYEVLSFSLQAHSLSQECIDKLDIFFADDLFK Sbjct: 181 NPLNLPGMGSGVLEDIMSIPDSSLRKRLGYEVLSFSLQAHSLSQECIDKLDIFFADDLFK 240 Query: 241 YESVCIAAMEHLKSKATAPIQNGPLPA 267 YESVCIAAMEHLKSKATAPIQNGPLPA Sbjct: 241 YESVCIAAMEHLKSKATAPIQNGPLPA 267 >UniRef50_B1ENN7 Putative uncharacterized protein n=1 Tax=Escherichia albertii TW07627 RepID=B1ENN7_9ESCH Length = 103 Score = 156 bits (395), Expect = 6e-37, Method: Composition-based stats. Identities = 35/97 (36%), Positives = 56/97 (57%), Gaps = 3/97 (3%) Query: 57 MIAYMSNINYDASKPGAPALSFDTYLQDNVKYRVIINNLYGSEIRIRGINKDFIGMDVTS 116 MIA + +I+YD P SF L+ + K +V I L G E RI N+ +D + Sbjct: 1 MIASIHHISYDYD---GPKFSFHASLESDNKIKVSIFALCGGEFRISVFNEKMNAIDFET 57 Query: 117 VFRPEKMTNLISIKNRLVIHYLRTIYYEQNYIHPVGS 153 F EKM +L+S++N+LVI L+ + Y+ + ++PVG+ Sbjct: 58 TFCVEKMVSLMSVRNKLVILNLKQMKYDSHRMYPVGT 94 >UniRef50_B8ZX06 Invected n=1 Tax=Papilio dardanus RepID=B8ZX06_PAPDA Length = 509 Score = 40.0 bits (92), Expect = 0.088, Method: Composition-based stats. Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 6/102 (5%) Query: 136 HYLRTIYYEQNYIHPVGSIFAAIQKNESLLKFPSIIS-----MLNINLLF-NPLNLPGMG 189 H L + + Q +++ + + + N+ LL PS I+ LN LLF NPLN + Sbjct: 152 HGLSSFKHIQTHLNAISQLSQNLNVNQPLLLRPSPITPNPLMFLNQPLLFQNPLNQVDLK 211 Query: 190 SGVLEDIMSIPDSSLRKRLGYEVLSFSLQAHSLSQECIDKLD 231 SGV+ + M IP ++L + L+F L+ + + E + D Sbjct: 212 SGVMPNRMPIPQNNLNLNTQHFGLNFGLRMKNQTMETRHRSD 253 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.320 0.137 0.378 Lambda K H 0.267 0.0433 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,068,371,429 Number of Sequences: 3077464 Number of extensions: 43704231 Number of successful extensions: 99554 Number of sequences better than 1.0e-01: 5 Number of HSP's better than 0.1 without gapping: 4 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 99549 Number of HSP's gapped (non-prelim): 9 length of query: 267 length of database: 1,040,396,356 effective HSP length: 126 effective length of query: 141 effective length of database: 652,635,892 effective search space: 92021660772 effective search space used: 92021660772 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits)