10/01/2012 01:35:19 : INFO  : Run start: Tue Jan 10 01:35:18 GMT 2012
10/01/2012 01:35:21 : INFO  : Initialised job
10/01/2012 01:35:22 : INFO  : Renaming log file 'phyre2_20120110_013518.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/69c04bfff82a8f70/phyre_20120110_013518.log'
10/01/2012 01:35:22 : INFO  : Initialised job:
Sequence
>batch____
MGKLTGKTALITGALQGIGEGIARTFARHGANLILLDISPEIEKLADELCGRGHRCTAVV
ADVRDPASVAAAIKRAKEKEGRIDILVNNAGVCRLGSFLDMSDDDRDFHIDINIKGVWNV
TKAVLPEMIARKDGRIVMMSSVTGDMVADPGETAYALTKAAIVGLTKSLAVEYAQSGIRV
NAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAIPMRRLADPLEVGELAAFLASDESS
YLTGTQNVIDGGSTLPETVSVGI

10/01/2012 01:35:23 : INFO  : Checked sequence
10/01/2012 01:35:24 : INFO  : Finding homologues with PSI-BLAST
10/01/2012 01:35:25 : INFO  : PSI-BLAST 3 iterations
10/01/2012 01:37:53 : INFO  : PSI-BLAST 5 iterations
10/01/2012 01:41:31 : INFO  : Finished PSI-BLAST
10/01/2012 01:41:33 : INFO  : Running Buildali to generate a3m file
10/01/2012 02:22:18 : INFO  : Converting to HMM
10/01/2012 02:22:32 : INFO  : Calibrating HMM
10/01/2012 02:22:44 : INFO  : Searching HMM database
10/01/2012 02:28:39 : INFO  : Finished buildali
10/01/2012 02:28:41 : INFO  : Predicting secondary structure
10/01/2012 02:28:48 : INFO  : Predicted secondary structure (PSI-Pred)
10/01/2012 02:28:49 : INFO  : Predicting Disordered regions
10/01/2012 02:28:51 : INFO  : Predicted Disorder (Disopred)
10/01/2012 02:28:53 : INFO  : Running memsat_svm check
10/01/2012 02:31:44 : INFO  : Running memsat_svm full
10/01/2012 02:38:13 : INFO  : Predicted Transmembrane (memsat_svm) ID '69c04bfff82a8f70'
10/01/2012 02:38:14 : INFO  : Initialising fold library search
10/01/2012 02:38:17 : INFO  : Initialised search input
10/01/2012 02:38:19 : INFO  : Building Ensemble models
10/01/2012 02:38:22 : INFO  : Building hh.d1geea_.model.1.pdb
10/01/2012 02:38:33 : INFO  : Building hh.c3rihB_.model.2.pdb
10/01/2012 02:38:42 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/69c04bfff82a8f70/hh.c3rihB_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/69c04bfff82a8f70/c3rihB_.2.pdb
10/01/2012 02:38:45 : INFO  : Building hh.c3toxG_.model.3.pdb
10/01/2012 02:38:54 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/69c04bfff82a8f70/hh.c3toxG_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/69c04bfff82a8f70/c3toxG_.3.pdb
10/01/2012 02:38:57 : INFO  : Building hh.d1iy8a_.model.4.pdb
10/01/2012 02:39:06 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/69c04bfff82a8f70/hh.d1iy8a_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/69c04bfff82a8f70/d1iy8a_.4.pdb
10/01/2012 02:39:09 : INFO  : Building hh.c3pk0B_.model.5.pdb
10/01/2012 02:39:18 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/69c04bfff82a8f70/hh.c3pk0B_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/69c04bfff82a8f70/c3pk0B_.5.pdb
10/01/2012 02:39:22 : INFO  : Building hh.c3itdA_.model.6.pdb
10/01/2012 02:39:30 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/69c04bfff82a8f70/hh.c3itdA_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/69c04bfff82a8f70/c3itdA_.7.pdb
10/01/2012 02:39:33 : INFO  : Building d1geea_.1.pdb
10/01/2012 02:39:45 : INFO  : Building c3rihB_.2.pdb
10/01/2012 02:39:56 : INFO  : Building c3toxG_.3.pdb
10/01/2012 02:40:07 : INFO  : Building d1iy8a_.4.pdb
10/01/2012 02:40:18 : INFO  : Building c3pk0B_.5.pdb
10/01/2012 02:40:31 : INFO  : Building d1xhla_.6.pdb
10/01/2012 02:40:42 : INFO  : Building c3itdA_.7.pdb
10/01/2012 02:40:54 : INFO  : Building d2ae2a_.8.pdb
10/01/2012 02:41:05 : INFO  : Building d2pd4a1.9.pdb
10/01/2012 02:41:16 : INFO  : Building c3lf2B_.10.pdb
10/01/2012 02:41:27 : INFO  : Building d1g0oa_.11.pdb
10/01/2012 02:41:39 : INFO  : Building d1yxma1.12.pdb
10/01/2012 02:41:51 : INFO  : Building d2rhca1.13.pdb
10/01/2012 02:42:02 : INFO  : Building d1k2wa_.14.pdb
10/01/2012 02:42:13 : INFO  : Building c3k31B_.15.pdb
10/01/2012 02:42:23 : INFO  : Building c3grkE_.16.pdb
10/01/2012 02:42:36 : INFO  : Building c3t7cC_.17.pdb
10/01/2012 02:42:47 : INFO  : Building d1ja9a_.18.pdb
10/01/2012 02:42:59 : INFO  : Building c1w4zA_.19.pdb
10/01/2012 02:43:11 : INFO  : Building d1zema1.20.pdb
10/01/2012 02:44:33 : INFO  : Finished HH model building
10/01/2012 02:44:34 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
10/01/2012 02:45:31 : INFO  : html domain output complete ID '69c04bfff82a8f70'
10/01/2012 03:29:03 : INFO  : Run end  : Tue Jan 10 03:29:02 GMT 2012
