Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	Q	K	V	V	L	A	T	G	N	V	G	K	V	R	E	L	A	S	L	L	S	D	F	G	L	D	I	V	A	Q	T	D	L	G	V	D	S	A	E	E	T	G	L	T	F	I	E	N	A	I	L	K	A	R	H	A	A	K	V
Secondary structure
SS confidence
Disorder		?	?																																	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		T	A	L	P	A	I	A	D	D	S	G	L	A	V	D	V	L	G	G	A	P	G	I	Y	S	A	R	Y	S	G	E	D	A	T	D	Q	K	N	L	Q	K	L	L	E	T	M	K	D	V	P	D	D	Q	R	Q	A	R	F	H	C
Secondary structure
SS confidence
Disorder																																	?	?															?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		V	L	V	Y	L	R	H	A	E	D	P	T	P	L	V	C	H	G	S	W	P	G	V	I	T	R	E	P	A	G	T	G	G	F	G	Y	D	P	I	F	F	V	P	S	E	G	K	T	A	A	E	L	T	R	E	E	K	S	A	I
Secondary structure
SS confidence
Disorder																													?		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Sequence		S	H	R	G	Q	A	L	K	L	L	L	D	A	L	R	N	G
Secondary structure
SS confidence
Disorder																	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1k7k chain A Region: 1 - 197 Aligned: 197 Modelled: 196 Confidence: 100.0% Identity: 99% Fold: Anticodon-binding domain-like Superfamily: ITPase-like Family: ITPase (Ham1) Phyre2 PDB 3tqu chain D Region: 1 - 196 Aligned: 195 Modelled: 196 Confidence: 100.0% Identity: 53% PDB header:hydrolase Chain: D: PDB Molecule:non-canonical purine ntp pyrophosphatase; PDBTitle: structure of a ham1 protein from coxiella burnetii Phyre2 PDB 1v7r chain A Region: 1 - 195 Aligned: 181 Modelled: 195 Confidence: 100.0% Identity: 36% Fold: Anticodon-binding domain-like Superfamily: ITPase-like Family: ITPase (Ham1) Phyre2 PDB 1vp2 chain A Region: 2 - 196 Aligned: 186 Modelled: 192 Confidence: 100.0% Identity: 34% Fold: Anticodon-binding domain-like Superfamily: ITPase-like Family: ITPase (Ham1) Phyre2 PDB 2car chain A domain 1 Region: 1 - 196 Aligned: 185 Modelled: 196 Confidence: 100.0% Identity: 26% Fold: Anticodon-binding domain-like Superfamily: ITPase-like Family: ITPase (Ham1) Phyre2 PDB 1b78 chain A Region: 3 - 196 Aligned: 181 Modelled: 194 Confidence: 100.0% Identity: 33% Fold: Anticodon-binding domain-like Superfamily: ITPase-like Family: ITPase (Ham1) Phyre2 PDB 2amh chain A domain 1 Region: 1 - 141 Aligned: 123 Modelled: 141 Confidence: 97.5% Identity: 14% Fold: Anticodon-binding domain-like Superfamily: ITPase-like Family: Maf-like Phyre2 PDB 1ex2 chain A Region: 1 - 141 Aligned: 117 Modelled: 141 Confidence: 93.3% Identity: 20% Fold: Anticodon-binding domain-like Superfamily: ITPase-like Family: Maf-like Phyre2 PDB 2p5x chain B Region: 2 - 141 Aligned: 121 Modelled: 140 Confidence: 89.6% Identity: 18% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:n-acetylserotonin o-methyltransferase-like protein; PDBTitle: crystal structure of maf domain of human n-acetylserotonin o-2 methyltransferase-like protein Phyre2 PDB 1u5w chain A domain 1 Region: 1 - 62 Aligned: 62 Modelled: 62 Confidence: 81.5% Identity: 21% Fold: Anticodon-binding domain-like Superfamily: ITPase-like Family: YjjX-like Phyre2 PDB 3brc chain A Region: 2 - 67 Aligned: 62 Modelled: 66 Confidence: 73.9% Identity: 21% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein of unknown function; PDBTitle: crystal structure of a conserved protein of unknown function from2 methanobacterium thermoautotrophicum Phyre2 PDB 1nn4 chain A Region: 1 - 86 Aligned: 81 Modelled: 86 Confidence: 72.6% Identity: 15% Fold: Ribose/Galactose isomerase RpiB/AlsB Superfamily: Ribose/Galactose isomerase RpiB/AlsB Family: Ribose/Galactose isomerase RpiB/AlsB Phyre2 PDB 3m1p chain A Region: 1 - 86 Aligned: 83 Modelled: 86 Confidence: 69.4% Identity: 18% PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: structure of ribose 5-phosphate isomerase type b from trypanosoma2 cruzi, soaked with allose-6-phosphate Phyre2 PDB 3k7p chain A Region: 1 - 86 Aligned: 83 Modelled: 86 Confidence: 69.4% Identity: 18% PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: structure of mutant of ribose 5-phosphate isomerase type b from2 trypanosoma cruzi. Phyre2 PDB 1zwy chain A domain 1 Region: 1 - 73 Aligned: 73 Modelled: 72 Confidence: 67.1% Identity: 18% Fold: Anticodon-binding domain-like Superfamily: ITPase-like Family: YjjX-like Phyre2 PDB 3crq chain A Region: 1 - 81 Aligned: 81 Modelled: 81 Confidence: 64.8% Identity: 19% PDB header:transferase Chain: A: PDB Molecule:trna delta(2)-isopentenylpyrophosphate PDBTitle: structure of trna dimethylallyltransferase: rna2 modification through a channel Phyre2 PDB 3c5y chain D Region: 3 - 87 Aligned: 83 Modelled: 80 Confidence: 59.8% Identity: 18% PDB header:isomerase Chain: D: PDB Molecule:ribose/galactose isomerase; PDBTitle: crystal structure of a putative ribose 5-phosphate isomerase2 (saro_3514) from novosphingobium aromaticivorans dsm at 1.81 a3 resolution Phyre2 PDB 3foz chain B Region: 1 - 77 Aligned: 77 Modelled: 77 Confidence: 56.4% Identity: 17% PDB header:transferase/rna Chain: B: PDB Molecule:trna delta(2)-isopentenylpyrophosphate transferase; PDBTitle: structure of e. coli isopentenyl-trna transferase in complex with e.2 coli trna(phe) Phyre2 PDB 3c5t chain B Region: 185 - 197 Aligned: 13 Modelled: 13 Confidence: 46.8% Identity: 38% PDB header:signaling protein/signaling protein Chain: B: PDB Molecule:exendin-4; PDBTitle: crystal structure of the ligand-bound glucagon-like peptide-1 receptor2 extracellular domain Phyre2 PDB 3ono chain A Region: 3 - 87 Aligned: 82 Modelled: 79 Confidence: 39.8% Identity: 21% PDB header:isomerase Chain: A: PDB Molecule:ribose/galactose isomerase; PDBTitle: crystal structure of ribose-5-phosphate isomerase lacab_rpib from2 vibrio parahaemolyticus Phyre2 1 d1k7ka_ 2 c3tquD_ 3 d1v7ra_ 4 d1vp2a_ 5 d2cara1 6 d1b78a_ 7 d2amha1 8 d1ex2a_ 9 c2p5xB_ 10 d1u5wa1 11 c3brcA_ 12 d1nn4a_ 13 c3m1pA_ 14 c3k7pA_ 15 d1zwya1 16 c3crqA_ 17 c3c5yD_ 18 c3fozB_ 19 c3c5tB_ 20 c3onoA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1k7ka_ 100.0 99 Fold:Anticodon-binding domain-like Superfamily:ITPase-like Family:ITPase (Ham1) 2 c3tquD_ 100.0 53 PDB header:hydrolase Chain: D: PDB Molecule:non-canonical purine ntp pyrophosphatase; PDBTitle: structure of a ham1 protein from coxiella burnetii 3 d1v7ra_ 100.0 36 Fold:Anticodon-binding domain-like Superfamily:ITPase-like Family:ITPase (Ham1) 4 d1vp2a_ 100.0 34 Fold:Anticodon-binding domain-like Superfamily:ITPase-like Family:ITPase (Ham1) 5 d2cara1 100.0 26 Fold:Anticodon-binding domain-like Superfamily:ITPase-like Family:ITPase (Ham1) 6 d1b78a_ 100.0 33 Fold:Anticodon-binding domain-like Superfamily:ITPase-like Family:ITPase (Ham1) 7 d2amha1 97.5 14 Fold:Anticodon-binding domain-like Superfamily:ITPase-like Family:Maf-like 8 d1ex2a_ 93.3 20 Fold:Anticodon-binding domain-like Superfamily:ITPase-like Family:Maf-like 9 c2p5xB_ 89.6 18 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:n-acetylserotonin o-methyltransferase-like protein; PDBTitle: crystal structure of maf domain of human n-acetylserotonin o-2 methyltransferase-like protein 10 d1u5wa1 81.5 21 Fold:Anticodon-binding domain-like Superfamily:ITPase-like Family:YjjX-like 11 c3brcA_ 73.9 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein of unknown function; PDBTitle: crystal structure of a conserved protein of unknown function from2 methanobacterium thermoautotrophicum 12 d1nn4a_ 72.6 15 Fold:Ribose/Galactose isomerase RpiB/AlsB Superfamily:Ribose/Galactose isomerase RpiB/AlsB Family:Ribose/Galactose isomerase RpiB/AlsB 13 c3m1pA_ 69.4 18 PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: structure of ribose 5-phosphate isomerase type b from trypanosoma2 cruzi, soaked with allose-6-phosphate 14 c3k7pA_ 69.4 18 PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: structure of mutant of ribose 5-phosphate isomerase type b from2 trypanosoma cruzi. 15 d1zwya1 67.1 18 Fold:Anticodon-binding domain-like Superfamily:ITPase-like Family:YjjX-like 16 c3crqA_ 64.8 19 PDB header:transferase Chain: A: PDB Molecule:trna delta(2)-isopentenylpyrophosphate PDBTitle: structure of trna dimethylallyltransferase: rna2 modification through a channel 17 c3c5yD_ 59.8 18 PDB header:isomerase Chain: D: PDB Molecule:ribose/galactose isomerase; PDBTitle: crystal structure of a putative ribose 5-phosphate isomerase2 (saro_3514) from novosphingobium aromaticivorans dsm at 1.81 a3 resolution 18 c3fozB_ 56.4 17 PDB header:transferase/rna Chain: B: PDB Molecule:trna delta(2)-isopentenylpyrophosphate transferase; PDBTitle: structure of e. coli isopentenyl-trna transferase in complex with e.2 coli trna(phe) 19 c3c5tB_ 46.8 38 PDB header:signaling protein/signaling protein Chain: B: PDB Molecule:exendin-4; PDBTitle: crystal structure of the ligand-bound glucagon-like peptide-1 receptor2 extracellular domain 20 c3onoA_ 39.8 21 PDB header:isomerase Chain: A: PDB Molecule:ribose/galactose isomerase; PDBTitle: crystal structure of ribose-5-phosphate isomerase lacab_rpib from2 vibrio parahaemolyticus 21 c2ppwA_ not modelled 38.9 17 PDB header:isomerase Chain: A: PDB Molecule:conserved domain protein; PDBTitle: the crystal structure of uncharacterized ribose 5-phosphate isomerase2 rpib from streptococcus pneumoniae 22 d2vvpa1 not modelled 29.4 18 Fold:Ribose/Galactose isomerase RpiB/AlsB Superfamily:Ribose/Galactose isomerase RpiB/AlsB Family:Ribose/Galactose isomerase RpiB/AlsB 23 d1u14a_ not modelled 29.2 17 Fold:Anticodon-binding domain-like Superfamily:ITPase-like Family:YjjX-like 24 c2jrlA_ not modelled 26.8 17 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: solution structure of the beryllofluoride-activated ntrc4 receiver2 domain dimer 25 c1nm3B_ not modelled 26.7 25 PDB header:electron transport Chain: B: PDB Molecule:protein hi0572; PDBTitle: crystal structure of heamophilus influenza hybrid-prx5 26 d1rlka_ not modelled 26.5 18 Fold:Peptidyl-tRNA hydrolase II Superfamily:Peptidyl-tRNA hydrolase II Family:Peptidyl-tRNA hydrolase II 27 d2pc6a1 not modelled 26.2 13 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 28 d2fgca1 not modelled 26.0 26 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 29 c3d3qB_ not modelled 25.6 22 PDB header:transferase Chain: B: PDB Molecule:trna delta(2)-isopentenylpyrophosphate PDBTitle: crystal structure of trna delta(2)-isopentenylpyrophosphate2 transferase (se0981) from staphylococcus epidermidis.3 northeast structural genomics consortium target ser100 30 c1d0rA_ not modelled 25.4 38 PDB header:hormone/growth factor Chain: A: PDB Molecule:glucagon-like peptide-1-(7-36)-amide; PDBTitle: solution structure of glucagon-like peptide-1-(7-36)-amide2 in trifluoroethanol/water 31 c3exaD_ not modelled 24.9 20 PDB header:transferase Chain: D: PDB Molecule:trna delta(2)-isopentenylpyrophosphate PDBTitle: crystal structure of the full-length trna2 isopentenylpyrophosphate transferase (bh2366) from3 bacillus halodurans, northeast structural genomics4 consortium target bhr41. 32 d1vbva1 not modelled 24.6 22 Fold:SH3-like barrel Superfamily:YccV-like Family:YccV-like 33 c1jrjA_ not modelled 24.1 38 PDB header:hormone/growth factor Chain: A: PDB Molecule:exendin-4; PDBTitle: solution structure of exendin-4 in 30-vol% trifluoroethanol 34 d1ixra2 not modelled 23.2 21 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:DNA helicase RuvA subunit, N-terminal domain 35 c3i42A_ not modelled 23.1 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:response regulator receiver domain protein (chey- PDBTitle: structure of response regulator receiver domain (chey-like)2 from methylobacillus flagellatus 36 d2f1fa2 not modelled 22.9 19 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 37 d1l8na1 not modelled 22.5 15 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:alpha-D-glucuronidase/Hyaluronidase catalytic domain 38 c3rh0A_ not modelled 22.0 30 PDB header:oxidoreductase Chain: A: PDB Molecule:arsenate reductase; PDBTitle: corynebacterium glutamicum mycothiol/mycoredoxin1-dependent arsenate2 reductase cg_arsc2 39 d1rp3a2 not modelled 21.5 28 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 40 c1mqrA_ not modelled 20.3 15 PDB header:hydrolase Chain: A: PDB Molecule:alpha-d-glucuronidase; PDBTitle: the crystal structure of alpha-d-glucuronidase (e386q) from bacillus2 stearothermophilus t-6 41 c3crnA_ not modelled 19.8 7 PDB header:signaling protein Chain: A: PDB Molecule:response regulator receiver domain protein, chey-like; PDBTitle: crystal structure of response regulator receiver domain protein (chey-2 like) from methanospirillum hungatei jf-1 42 c3he8A_ not modelled 19.6 18 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase; PDBTitle: structural study of clostridium thermocellum ribose-5-phosphate2 isomerase b 43 d2eyqa2 not modelled 19.1 23 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 44 d1o1xa_ not modelled 18.4 16 Fold:Ribose/Galactose isomerase RpiB/AlsB Superfamily:Ribose/Galactose isomerase RpiB/AlsB Family:Ribose/Galactose isomerase RpiB/AlsB 45 d1c01a_ not modelled 17.8 21 Fold:gamma-Crystallin-like Superfamily:gamma-Crystallin-like Family:Plant antimicrobial protein MIAMP1 46 d3ehwa1 not modelled 16.2 50 Fold:beta-clip Superfamily:dUTPase-like Family:dUTPase-like 47 d2nn6h3 not modelled 15.4 14 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 48 d1smyf2 not modelled 15.1 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 49 d1q7sa_ not modelled 14.8 20 Fold:Peptidyl-tRNA hydrolase II Superfamily:Peptidyl-tRNA hydrolase II Family:Peptidyl-tRNA hydrolase II 50 c3jteA_ not modelled 13.7 12 PDB header:protein binding Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of response regulator receiver domain2 protein from clostridium thermocellum 51 c3a8tA_ not modelled 13.3 24 PDB header:transferase Chain: A: PDB Molecule:adenylate isopentenyltransferase; PDBTitle: plant adenylate isopentenyltransferase in complex with atp 52 c3mzyA_ not modelled 12.8 15 PDB header:rna binding protein Chain: A: PDB Molecule:rna polymerase sigma-h factor; PDBTitle: the crystal structure of the rna polymerase sigma-h factor from2 fusobacterium nucleatum to 2.5a 53 c2wmpB_ not modelled 12.4 33 PDB header:chaperone Chain: B: PDB Molecule:papg protein; PDBTitle: structure of the e. coli chaperone papd in complex with the pilin2 domain of the papgii adhesin 54 d3erja1 not modelled 12.0 20 Fold:Peptidyl-tRNA hydrolase II Superfamily:Peptidyl-tRNA hydrolase II Family:Peptidyl-tRNA hydrolase II 55 d2f06a2 not modelled 11.9 16 Fold:Ferredoxin-like Superfamily:ACT-like Family:BT0572-like 56 c3f4fB_ not modelled 11.3 50 PDB header:hydrolase Chain: B: PDB Molecule:deoxyuridine 5'-triphosphate nucleotidohydrolase; PDBTitle: crystal structure of dut1p, a dutpase from saccharomyces cerevisiae 57 c3kc2A_ not modelled 11.2 19 PDB header:hydrolase Chain: A: PDB Molecule:uncharacterized protein ykr070w; PDBTitle: crystal structure of mitochondrial had-like phosphatase from2 saccharomyces cerevisiae 58 d1dq3a4 not modelled 10.7 17 Fold:Homing endonuclease-like Superfamily:Homing endonucleases Family:Intein endonuclease 59 c2zv3E_ not modelled 10.7 22 PDB header:hydrolase Chain: E: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: crystal structure of project mj0051 from methanocaldococcus2 jannaschii dsm 2661 60 d1ku7a_ not modelled 10.7 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 61 c2qr3A_ not modelled 10.6 13 PDB header:transcription Chain: A: PDB Molecule:two-component system response regulator; PDBTitle: crystal structure of the n-terminal signal receiver domain of two-2 component system response regulator from bacteroides fragilis 62 c3hugA_ not modelled 10.3 22 PDB header:transcription/membrane protein Chain: A: PDB Molecule:rna polymerase sigma factor; PDBTitle: crystal structure of mycobacterium tuberculosis anti-sigma factor rsla2 in complex with -35 promoter binding domain of sigl 63 c1xtyD_ not modelled 10.0 16 PDB header:hydrolase Chain: D: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: crystal structure of sulfolobus solfataricus peptidyl-trna2 hydrolase 64 c1or7A_ not modelled 9.3 12 PDB header:transcription Chain: A: PDB Molecule:rna polymerase sigma-e factor; PDBTitle: crystal structure of escherichia coli sigmae with the cytoplasmic2 domain of its anti-sigma rsea 65 c2rpbA_ not modelled 8.9 18 PDB header:membrane protein Chain: A: PDB Molecule:hypothetical membrane protein; PDBTitle: the solution structure of membrane protein 66 c3c3mA_ not modelled 8.9 10 PDB header:signaling protein Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of the n-terminal domain of response regulator2 receiver protein from methanoculleus marisnigri jr1 67 c3s5pA_ not modelled 8.9 20 PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: crystal structure of ribose-5-phosphate isomerase b rpib from giardia2 lamblia 68 c1yd2A_ not modelled 8.8 18 PDB header:dna binding protein Chain: A: PDB Molecule:uvrabc system protein c; PDBTitle: crystal structure of the giy-yig n-terminal endonuclease domain of2 uvrc from thermotoga maritima: point mutant y19f bound to the3 catalytic divalent cation 69 d2ix0a2 not modelled 8.6 35 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 70 c3qd5B_ not modelled 8.6 24 PDB header:isomerase Chain: B: PDB Molecule:putative ribose-5-phosphate isomerase; PDBTitle: crystal structure of a putative ribose-5-phosphate isomerase from2 coccidioides immitis solved by combined iodide ion sad and mr 71 d1or7a1 not modelled 8.4 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 72 c3cg0A_ not modelled 8.4 17 PDB header:lyase Chain: A: PDB Molecule:response regulator receiver modulated diguanylate cyclase PDBTitle: crystal structure of signal receiver domain of modulated diguanylate2 cyclase from desulfovibrio desulfuricans g20, an example of alternate3 folding 73 c1upiA_ not modelled 8.3 21 PDB header:epimerase Chain: A: PDB Molecule:dtdp-4-dehydrorhamnose 3,5-epimerase; PDBTitle: mycobacterium tuberculosis rmlc epimerase (rv3465) 74 d1j9ba_ not modelled 7.7 13 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:ArsC-like 75 c3ehwA_ not modelled 7.7 50 PDB header:hydrolase Chain: A: PDB Molecule:dutp pyrophosphatase; PDBTitle: human dutpase in complex with alpha,beta-imido-dutp and mg2+:2 visualization of the full-length c-termini in all monomers and3 suggestion for an additional metal ion binding site 76 d1cuka3 not modelled 7.7 28 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:DNA helicase RuvA subunit, N-terminal domain 77 c1y7xA_ not modelled 7.5 10 PDB header:structural protein, protein binding Chain: A: PDB Molecule:major vault protein; PDBTitle: solution structure of a two-repeat fragment of major vault2 protein 78 c3h0dB_ not modelled 7.5 38 PDB header:transcription/dna Chain: B: PDB Molecule:ctsr; PDBTitle: crystal structure of ctsr in complex with a 26bp dna duplex 79 c1yd6A_ not modelled 7.5 45 PDB header:dna binding protein Chain: A: PDB Molecule:uvrc; PDBTitle: crystal structure of the giy-yig n-terminal endonuclease2 domain of uvrc from bacillus caldotenax 80 c2d3kA_ not modelled 7.4 20 PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: structural study on project id ph1539 from pyrococcus2 horikoshii ot3 81 d1muma_ not modelled 7.2 24 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like 82 d1ku3a_ not modelled 6.9 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 83 c2h5xA_ not modelled 6.9 23 PDB header:dna binding protein Chain: A: PDB Molecule:holliday junction atp-dependent dna helicase ruva; PDBTitle: ruva from mycobacterium tuberculosis 84 c3eplA_ not modelled 6.7 18 PDB header:transferase/rna Chain: A: PDB Molecule:trna isopentenyltransferase; PDBTitle: crystallographic snapshots of eukaryotic2 dimethylallyltransferase acting on trna: insight into trna3 recognition and reaction mechanism 85 c3b8iF_ not modelled 6.5 33 PDB header:lyase Chain: F: PDB Molecule:pa4872 oxaloacetate decarboxylase; PDBTitle: crystal structure of oxaloacetate decarboxylase from pseudomonas2 aeruginosa (pa4872) in complex with oxalate and mg2+. 86 c2lciA_ not modelled 6.3 19 PDB header:de novo protein Chain: A: PDB Molecule:protein or36; PDBTitle: solution nmr structure of de novo designed protein, p-loop ntpase2 fold, northeast structural genomics consortium target or36 (casd3 target) 87 d1jvaa3 not modelled 6.2 27 Fold:Homing endonuclease-like Superfamily:Homing endonucleases Family:Intein endonuclease 88 c2qn5B_ not modelled 6.1 36 PDB header:hydrolase inhibitor/hydrolase Chain: B: PDB Molecule:bowman-birk type bran trypsin inhibitor; PDBTitle: crystal structure and functional study of the bowman-birk2 inhibitor from rice bran in complex with bovine trypsin 89 d1mvoa_ not modelled 5.8 24 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 90 c3dlmA_ not modelled 5.8 15 PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase setdb1; PDBTitle: crystal structure of tudor domain of human histone-lysine n-2 methyltransferase setdb1 91 c3nhzA_ not modelled 5.7 20 PDB header:dna binding protein Chain: A: PDB Molecule:two component system transcriptional regulator mtra; PDBTitle: structure of n-terminal domain of mtra 92 d1h41a1 not modelled 5.7 20 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:alpha-D-glucuronidase/Hyaluronidase catalytic domain 93 d1bvsa3 not modelled 5.6 28 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:DNA helicase RuvA subunit, N-terminal domain 94 c2gx5B_ not modelled 5.4 11 PDB header:transcription Chain: B: PDB Molecule:gtp-sensing transcriptional pleiotropic repressor cody; PDBTitle: n-terminal gaf domain of transcriptional pleiotropic repressor cody 95 c2gidP_ not modelled 5.3 36 PDB header:translation Chain: P: PDB Molecule:mitochondrial rna-binding protein 2; PDBTitle: crystal structures of trypanosoma bruciei mrp1/mrp2 96 d2p0sa1 not modelled 5.2 31 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:PG0945 N-terminal domain-like 97 c2dgbA_ not modelled 5.1 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein purs; PDBTitle: structure of thermus thermophilus purs in the p21 form 98 c1t39A_ not modelled 5.1 12 PDB header:transferase/dna Chain: A: PDB Molecule:methylated-dna--protein-cysteine PDBTitle: human o6-alkylguanine-dna alkyltransferase covalently2 crosslinked to dna 99 d1s7oa_ not modelled 5.0 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:YlxM/p13-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0